#ID = Affymetrix Probe Set ID #GB_ACC = GenBank Accession Number #SPOT_ID = identifies controls #Species Scientific Name = #Annotation Date = #Sequence Type = #Sequence Source = The database from which the sequence used to design this probe set was taken. #Target Description = GenBank description associated with the representative public identifier. Blank for some probe sets. #Representative Public ID = The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used. #Gene Title = Title of Gene represented by the probe set. #Gene Symbol = A gene symbol, when one is available (from UniGene). #ENTREZ_GENE_ID = Entrez Gene Database UID #RefSeq Transcript ID = References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet. #Gene Ontology Biological Process = Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended". #Gene Ontology Cellular Component = Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended". #Gene Ontology Molecular Function = Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended". ID GB_ACC SPOT_ID Species Scientific Name Annotation Date Sequence Type Sequence Source Target Description Representative Public ID Gene Title Gene Symbol ENTREZ_GENE_ID RefSeq Transcript ID Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function 1367452_at NM_133594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133594.1 /DB_XREF=gi:19424297 /GEN=Smt3h2 /FEA=FLmRNA /CNT=51 /TID=Rn.5958.1 /TIER=FL+Stack /STK=35 /UG=Rn.5958 /DEF=Rattus norvegicus SMT3 suppressor of mif two 3 homolog 2 (yeast) (Smt3h2), mRNA. /PROD=SMT3 suppressor of mif two 3 homolog 2 (yeast) /FL=gb:NM_133594.1 gb:L79949.1 NM_133594 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) Sumo2 690244 NM_133594 0016481 // negative regulation of transcription // inferred from mutant phenotype /// 0016925 // protein sumoylation // inferred from direct assay /// 0034613 // cellular protein localization // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0016564 // transcription repressor activity // inferred from mutant phenotype /// 0031625 // ubiquitin protein ligase binding // inferred from sequence or structural similarity 1367453_at NM_053743 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053743.1 /DB_XREF=gi:16758569 /GEN=Cdc37 /FEA=FLmRNA /CNT=31 /TID=Rn.17982.1 /TIER=FL+Stack /STK=25 /UG=Rn.17982 /LL=114562 /DEF=Rattus norvegicus CDC37 (cell division cycle 37, S. cerevisiae, homolog) (Cdc37), mRNA. /PROD=CDC37 (cell division cycle 37, S. cerevisiae,homolog) /FL=gb:D26564.1 gb:NM_053743.1 NM_053743 cell division cycle 37 homolog (S. cerevisiae) Cdc37 114562 NM_053743 0051726 // regulation of cell cycle // inferred from expression pattern /// 0060334 // regulation of interferon-gamma-mediated signaling pathway // not recorded /// 0060338 // regulation of type I interferon-mediated signaling pathway // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded /// 0031072 // heat shock protein binding // not recorded /// 0051879 // Hsp90 protein binding // not recorded 1367454_at NM_021765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021765.1 /DB_XREF=gi:11120715 /GEN=Copb /FEA=FLmRNA /CNT=22 /TID=Rn.37178.1 /TIER=FL+Stack /STK=17 /UG=Rn.37178 /LL=60384 /DEF=Rattus norvegicus beta prime COP (Copb), mRNA. /PROD=beta prime COP /FL=gb:NM_021765.1 gb:AF002705.1 NM_021765 coatomer protein complex, subunit beta 2 (beta prime) Copb2 60384 NM_021765 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // not recorded /// 0006891 // intra-Golgi vesicle-mediated transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0048205 // COPI coating of Golgi vesicle // not recorded 0000139 // Golgi membrane // inferred from direct assay /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030126 // COPI vesicle coat // not recorded /// 0030663 // COPI coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005080 // protein kinase C binding // inferred from physical interaction /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1367455_at NM_053864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053864.1 /DB_XREF=gi:17865350 /GEN=Vcp /FEA=FLmRNA /CNT=53 /TID=Rn.3820.1 /TIER=FL+Stack /STK=16 /UG=Rn.3820 /LL=116643 /DEF=Rattus norvegicus valosin-containing protein (Vcp), mRNA. /PROD=valosin-containing protein /FL=gb:NM_053864.1 gb:U11760.1 NM_053864 valosin-containing protein Vcp 116643 NM_053864 0006302 // double-strand break repair // inferred from electronic annotation /// 0006302 // double-strand break repair // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from mutant phenotype /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0030970 // retrograde protein transport, ER to cytosol // inferred from electronic annotation /// 0030970 // retrograde protein transport, ER to cytosol // not recorded /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0045732 // positive regulation of protein catabolic process // not recorded /// 0045732 // positive regulation of protein catabolic process // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from direct assay /// 0070842 // aggresome assembly // inferred from electronic annotation /// 0070842 // aggresome assembly // not recorded 0000502 // proteasome complex // inferred from electronic annotation /// 0000502 // proteasome complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0031593 // polyubiquitin binding // inferred from electronic annotation /// 0031593 // polyubiquitin binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from direct assay 1367456_at NM_031237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031237.1 /DB_XREF=gi:13676842 /GEN=Ube2d3 /FEA=FLmRNA /CNT=47 /TID=Rn.2778.1 /TIER=FL+Stack /STK=11 /UG=Rn.2778 /LL=81920 /DEF=Rattus norvegicus ubiquitin-conjugating enzyme E2D 3 (homologous to yeast UBC45) (Ube2d3), mRNA. /PROD=ubiquitin-conjugating enzyme E2D 3 (homologousto yeast UBC45) /FL=gb:NM_031237.1 gb:AB006852.1 gb:U13175.1 NM_031237 ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast) Ube2d3 81920 NM_031237 0000209 // protein polyubiquitination // not recorded /// 0000209 // protein polyubiquitination // inferred from sequence or structural similarity /// 0006281 // DNA repair // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0006513 // protein monoubiquitination // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded /// 0030509 // BMP signaling pathway // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0070936 // protein K48-linked ubiquitination // inferred from sequence or structural similarity /// 0070979 // protein K11-linked ubiquitination // not recorded /// 0070979 // protein K11-linked ubiquitination // inferred from sequence or structural similarity 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1367457_at NM_053739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053739.1 /DB_XREF=gi:16758561 /GEN=Becn1 /FEA=FLmRNA /CNT=20 /TID=Rn.2776.1 /TIER=FL+Stack /STK=10 /UG=Rn.2776 /LL=114558 /DEF=Rattus norvegicus beclin 1 (coiled-coil, myosin-like BCL2-interacting protein) (Becn1), mRNA. /PROD=beclin 1 (coiled-coil, myosin-likeBCL2-interacting protein) /FL=gb:AY033824.1 gb:NM_053739.1 NM_053739 beclin 1, autophagy related Becn1 114558 NM_001034117 /// NM_053739 0000045 // autophagic vacuole assembly // inferred from mutant phenotype /// 0006914 // autophagy // inferred from expression pattern /// 0006914 // autophagy // inferred from mutant phenotype /// 0006914 // autophagy // not recorded /// 0006914 // autophagy // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009615 // response to virus // inferred from electronic annotation /// 0016239 // positive regulation of macroautophagy // inferred from electronic annotation /// 0016239 // positive regulation of macroautophagy // not recorded /// 0051707 // response to other organism // not recorded /// 0051707 // response to other organism // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367458_at NM_031342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031342.1 /DB_XREF=gi:13786177 /GEN=Lypla2 /FEA=FLmRNA /CNT=14 /TID=Rn.8586.1 /TIER=FL /STK=4 /UG=Rn.8586 /LL=83510 /DEF=Rattus norvegicus lysophospholipase II (Lypla2), mRNA. /PROD=lysophospholipase II /FL=gb:NM_031342.1 gb:AB021645.1 NM_031342 lysophospholipase 2 Lypla2 83510 NM_031342 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation 1367459_at BE329198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329198 /DB_XREF=gi:9202974 /DB_XREF=hq38b08.x1 /CLONE=IMAGE:3121623 /FEA=FLmRNA /CNT=82 /TID=Rn.1391.1 /TIER=Stack /STK=9 /UG=Rn.1391 /LL=64310 /UG_GENE=Arf1 /UG_TITLE=ADP-ribosylation factor 1 /FL=gb:NM_022518.1 gb:L12380.1 BE329198 ADP-ribosylation factor 1 Arf1 64310 NM_022518 0006810 // transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // not recorded /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // not recorded /// 0048205 // COPI coating of Golgi vesicle // not recorded 0000139 // Golgi membrane // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0012505 // endomembrane system // not recorded /// 0030017 // sarcomere // inferred from electronic annotation /// 0030017 // sarcomere // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1367460_at BM387347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387347 /DB_XREF=gi:18187400 /DB_XREF=UI-R-CN1-cjj-c-19-0-UI.s1 /CLONE=UI-R-CN1-cjj-c-19-0-UI /FEA=FLmRNA /CNT=36 /TID=Rn.1441.1 /TIER=Stack /STK=20 /UG=Rn.1441 /LL=29661 /UG_GENE=Gdi2 /UG_TITLE=guanosine diphosphate (GDP) dissociation inhibitor 2 /FL=gb:NM_017276.1 BM387347 GDP dissociation inhibitor 2 Gdi2 29662 NM_017276 0007264 // small GTPase mediated signal transduction // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0015031 // protein transport // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from expression pattern /// 0043087 // regulation of GTPase activity // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // traceable author statement /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005093 // Rab GDP-dissociation inhibitor activity // inferred from direct assay /// 0005093 // Rab GDP-dissociation inhibitor activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // not recorded /// 0005515 // protein binding // not recorded /// 0031267 // small GTPase binding // inferred from direct assay 1367461_at NM_080781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080781.1 /DB_XREF=gi:18158448 /GEN=Copb1 /FEA=FLmRNA /CNT=30 /TID=Rn.4327.1 /TIER=FL+Stack /STK=14 /UG=Rn.4327 /LL=114023 /DEF=Rattus norvegicus coatomer protein complex, subunit beta 1 (Copb1), mRNA. /PROD=coatomer protein complex, subunit beta 1 /FL=gb:NM_080781.1 NM_080781 coatomer protein complex, subunit beta 1 Copb1 114023 NM_080781 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // not recorded /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // traceable author statement /// 0006891 // intra-Golgi vesicle-mediated transport // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0048205 // COPI coating of Golgi vesicle // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005798 // Golgi-associated vesicle // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030126 // COPI vesicle coat // inferred from direct assay /// 0030126 // COPI vesicle coat // inferred from electronic annotation /// 0030663 // COPI coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1367462_at U10861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U10861.1 /DB_XREF=gi:505657 /FEA=FLmRNA /CNT=39 /TID=Rn.3430.1 /TIER=FL+Stack /STK=7 /UG=Rn.3430 /LL=29156 /UG_GENE=Capns1 /DEF=Rattus norvegicus calpain small subunit mRNA, complete cds. /PROD=calpain small subunit /FL=gb:U10861.1 U10861 calpain, small subunit 1 Capns1 29156 NM_017118 0006508 // proteolysis // inferred from mutant phenotype /// 0008152 // metabolic process // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004198 // calcium-dependent cysteine-type endopeptidase activity // inferred from direct assay /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // not recorded /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1367463_at AI235510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235510 /DB_XREF=gi:3829016 /DB_XREF=EST232072 /CLONE=ROVCS86 /FEA=mRNA /CNT=29 /TID=Rn.3235.1 /TIER=Stack /STK=23 /UG=Rn.3235 /UG_TITLE=B-cell receptor associated protein 37 (BAP-37) mRNA, partial cds and 3 untranslated sequence AI235510 prohibitin 2 Phb2 114766 NM_001013035 0006350 // transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0033147 // negative regulation of estrogen receptor signaling pathway // inferred from electronic annotation /// 0033147 // negative regulation of estrogen receptor signaling pathway // not recorded /// 0033600 // negative regulation of mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0033600 // negative regulation of mammary gland epithelial cell proliferation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0060744 // mammary gland branching involved in thelarche // inferred from electronic annotation /// 0060744 // mammary gland branching involved in thelarche // not recorded /// 0060749 // mammary gland alveolus development // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // not recorded /// 0060762 // regulation of branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060762 // regulation of branching involved in mammary gland duct morphogenesis // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0016566 // specific transcriptional repressor activity // inferred from sequence or structural similarity /// 0016566 // specific transcriptional repressor activity // inferred from electronic annotation 1367464_at AI598391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598391 /DB_XREF=gi:4607439 /DB_XREF=EST250094 /CLONE=REMDQ63 /FEA=mRNA /CNT=15 /TID=Rn.21553.1 /TIER=Stack /STK=11 /UG=Rn.21553 /LL=84401 /UG_GENE=Siahbp1 /UG_TITLE=siah binding protein 1; FBP interacting repressor; pyrimidine tract binding splicing factor; Ro ribonucleoprotein-binding protein 1 AI598391 poly-U binding splicing factor 60 Puf60 84401 NM_001191880 /// XM_001057313 /// XM_001070780 /// XM_001071005 /// XM_343268 0006350 // transcription // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0019907 // cyclin-dependent protein kinase activating kinase holoenzyme complex // inferred from electronic annotation /// 0019907 // cyclin-dependent protein kinase activating kinase holoenzyme complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367465_at AI013627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013627 /DB_XREF=gi:3227683 /DB_XREF=EST208302 /CLONE=RSPBP78 /FEA=DNA /CNT=22 /TID=Rn.7262.1 /TIER=Stack /STK=19 /UG=Rn.7262 /UG_TITLE=Rattus norvegicus DAD-1 gene AI013627 defender against cell death 1 Dad1 192275 NM_138910 0001824 // blastocyst development // inferred from electronic annotation /// 0001824 // blastocyst development // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1367466_at AI406518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406518 /DB_XREF=gi:4250022 /DB_XREF=EST234804 /CLONE=RBRDL35 /FEA=EST /CNT=49 /TID=Rn.897.1 /TIER=Stack /STK=47 /UG=Rn.897 /UG_TITLE=ESTs, Moderately similar to C50C3.6.p (Caenorhabditis elegans) (C.elegans) AI406518 PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae) Prpf8 287530 NM_001191590 /// XM_001080695 /// XM_002724519 /// XM_002727776 /// XM_213385 0000398 // nuclear mRNA splicing, via spliceosome // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005681 // spliceosomal complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367467_at BG380638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380638 /DB_XREF=gi:13305110 /DB_XREF=UI-R-CT0-btz-f-07-0-UI.s1 /CLONE=UI-R-CT0-btz-f-07-0-UI /FEA=EST /CNT=56 /TID=Rn.121.1 /TIER=Stack /STK=45 /UG=Rn.121 /UG_TITLE=ESTs, Weakly similar to T26931 hypothetical protein Y45F10D.4 - Caenorhabditis elegans (C.elegans) BG380638 iron-sulfur cluster scaffold homolog (E. coli) Iscu 288740 NM_001105936 0016226 // iron-sulfur cluster assembly // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032947 // protein complex scaffold // inferred from electronic annotation /// 0032947 // protein complex scaffold // not recorded /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation 1367468_at BM386654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386654 /DB_XREF=gi:18186707 /DB_XREF=UI-R-CN1-cjg-j-09-0-UI.s1 /CLONE=UI-R-CN1-cjg-j-09-0-UI /FEA=EST /CNT=43 /TID=Rn.1095.1 /TIER=Stack /STK=38 /UG=Rn.1095 /UG_TITLE=ESTs, Weakly similar to ZF94_RAT ZINC FINGER PROTEIN 94 (ZFP-94) (ZINC FINGER PROTEIN Y1) (RLZF-Y) (R.norvegicus) BM386654 SCAN domain-containing 1 Scand1 362252 NM_001108599 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded 1367469_at BG667162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667162 /DB_XREF=gi:13889084 /DB_XREF=DRA07E03 /CLONE=DRA07E03 /FEA=EST /CNT=59 /TID=Rn.3992.1 /TIER=Stack /STK=32 /UG=Rn.3992 /UG_TITLE=ESTs, Weakly similar to S49172 translation initiation factor eIF-4 gamma (H.sapiens) BG667162 eukaryotic translation initiation factor 4, gamma 2 Eif4g2 361628 NM_001017374 0006446 // regulation of translational initiation // not recorded /// 0016070 // RNA metabolic process // inferred from electronic annotation /// 0045948 // positive regulation of translational initiation // not recorded 0005737 // cytoplasm // not recorded /// 0016281 // eukaryotic translation initiation factor 4F complex // not recorded 0003743 // translation initiation factor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008135 // translation factor activity, nucleic acid binding // not recorded 1367470_at AA851321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851321 /DB_XREF=gi:2938861 /DB_XREF=EST194089 /CLONE=RPLAF21 /FEA=EST /CNT=34 /TID=Rn.15760.1 /TIER=Stack /STK=31 /UG=Rn.15760 /UG_TITLE=ESTs, Weakly similar to ARF6_HUMAN ADP-RIBOSYLATION FACTOR 6 (R.norvegicus) AA851321 SAR1 homolog A (S. cerevisiae) Sar1a 361842 NM_001007739 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1367471_at BI279090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279090 /DB_XREF=gi:14926572 /DB_XREF=UI-R-DA0-byj-b-03-0-UI.s1 /CLONE=UI-R-DA0-byj-b-03-0-UI /FEA=EST /CNT=38 /TID=Rn.1769.1 /TIER=Stack /STK=30 /UG=Rn.1769 /UG_TITLE=ESTs, Highly similar to RPB5_HUMAN DNA-DIRECTED RNA POLYMERASE II 23 KD POLYPEPTIDE (H.sapiens) BI279090 polymerase (RNA) II (DNA directed) polypeptide E Polr2e 690966 NM_001109614 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // not recorded /// 0005665 // DNA-directed RNA polymerase II, core complex // not recorded /// 0005665 // DNA-directed RNA polymerase II, core complex // inferred from sequence or structural similarity /// 0005665 // DNA-directed RNA polymerase II, core complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation 1367472_at BG153295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG153295 /DB_XREF=gi:12665325 /DB_XREF=nag11g11.x1 /CLONE=IMAGE:4176188 /FEA=EST /CNT=38 /TID=Rn.11800.1 /TIER=Stack /STK=28 /UG=Rn.11800 /UG_TITLE=ESTs, Highly similar to I63168 gene Ube1x protein - rat (R.norvegicus) BG153295 ubiquitin-like modifier activating enzyme 1 Uba1 314432 NM_001014080 0006464 // protein modification process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008641 // small protein activating enzyme activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1367473_at BI284237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284237 /DB_XREF=gi:14936738 /DB_XREF=UI-R-CX0s-ccn-g-09-0-UI.s1 /CLONE=UI-R-CX0s-ccn-g-09-0-UI /FEA=EST /CNT=39 /TID=Rn.3119.1 /TIER=Stack /STK=28 /UG=Rn.3119 /UG_TITLE=ESTs BI284237 translocase of outer mitochondrial membrane 22 homolog (yeast) Tomm22 300075 NM_212514 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070096 // mitochondrial outer membrane translocase complex assembly // inferred from electronic annotation /// 0070096 // mitochondrial outer membrane translocase complex assembly // not recorded 0000299 // integral to membrane of membrane fraction // inferred from electronic annotation /// 0000299 // integral to membrane of membrane fraction // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005742 // mitochondrial outer membrane translocase complex // inferred from electronic annotation /// 0005742 // mitochondrial outer membrane translocase complex // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008320 // protein transmembrane transporter activity // inferred from mutant phenotype 1367474_at AI231320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231320 /DB_XREF=gi:3815200 /DB_XREF=EST228008 /CLONE=REMDI55 /FEA=EST /CNT=28 /TID=Rn.8469.1 /TIER=Stack /STK=24 /UG=Rn.8469 /UG_TITLE=ESTs, Moderately similar to Y079_HUMAN HYPOTHETICAL PROTEIN KIAA0079 (H.sapiens) AI231320 SEC24 related gene family, member C (S. cerevisiae) Sec24c 685144 NM_001109456 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded 0030127 // COPII vesicle coat // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1367475_at AI227695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227695 /DB_XREF=gi:4135270 /DB_XREF=EST224390 /CLONE=RBRCK34 /FEA=EST /CNT=38 /TID=Rn.2396.1 /TIER=Stack /STK=21 /UG=Rn.2396 /UG_TITLE=ESTs, Weakly similar to CO1B_RAT CORONIN 1B (CORONIN 2) (R.norvegicus) AI227695 cell division cycle 42 (GTP binding protein) Cdc42 64465 NM_171994 0001934 // positive regulation of protein phosphorylation // not recorded /// 0003334 // keratinocyte development // not recorded /// 0006184 // GTP catabolic process // not recorded /// 0007088 // regulation of mitosis // inferred from electronic annotation /// 0007088 // regulation of mitosis // not recorded /// 0007097 // nuclear migration // inferred from electronic annotation /// 0007097 // nuclear migration // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0009749 // response to glucose stimulus // traceable author statement /// 0010628 // positive regulation of gene expression // not recorded /// 0010629 // negative regulation of gene expression // not recorded /// 0016337 // cell-cell adhesion // not recorded /// 0017157 // regulation of exocytosis // traceable author statement /// 0030010 // establishment of cell polarity // traceable author statement /// 0030036 // actin cytoskeleton organization // not recorded /// 0031069 // hair follicle morphogenesis // not recorded /// 0031274 // positive regulation of pseudopodium assembly // not recorded /// 0031333 // negative regulation of protein complex assembly // not recorded /// 0031424 // keratinization // not recorded /// 0031647 // regulation of protein stability // not recorded /// 0033138 // positive regulation of peptidyl-serine phosphorylation // not recorded /// 0034332 // adherens junction organization // inferred from electronic annotation /// 0034332 // adherens junction organization // not recorded /// 0034613 // cellular protein localization // inferred from electronic annotation /// 0034613 // cellular protein localization // not recorded /// 0035088 // establishment or maintenance of apical/basal cell polarity // inferred from electronic annotation /// 0035088 // establishment or maintenance of apical/basal cell polarity // not recorded /// 0035264 // multicellular organism growth // not recorded /// 0042176 // regulation of protein catabolic process // not recorded /// 0043552 // positive regulation of phosphoinositide 3-kinase activity // inferred from electronic annotation /// 0043552 // positive regulation of phosphoinositide 3-kinase activity // not recorded /// 0045740 // positive regulation of DNA replication // inferred from mutant phenotype /// 0045859 // regulation of protein kinase activity // not recorded /// 0046330 // positive regulation of JNK cascade // inferred from direct assay /// 0046847 // filopodium assembly // inferred from electronic annotation /// 0046847 // filopodium assembly // not recorded /// 0048664 // neuron fate determination // inferred from electronic annotation /// 0048664 // neuron fate determination // not recorded /// 0048730 // epidermis morphogenesis // not recorded /// 0051017 // actin filament bundle assembly // not recorded /// 0051246 // regulation of protein metabolic process // not recorded /// 0051647 // nucleus localization // inferred from electronic annotation /// 0051647 // nucleus localization // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060684 // epithelial-mesenchymal cell signaling // not recorded /// 0060789 // hair follicle placode formation // not recorded /// 0071338 // positive regulation of hair follicle cell proliferation // not recorded /// 0090136 // epithelial cell-cell adhesion // not recorded 0000139 // Golgi membrane // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay /// 0030175 // filopodium // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0042995 // cell projection // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // traceable author statement /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation /// 0030742 // GTP-dependent protein binding // inferred from electronic annotation /// 0030742 // GTP-dependent protein binding // not recorded /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from physical interaction /// 0031996 // thioesterase binding // not recorded 1367476_at AA799994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799994 /DB_XREF=gi:2862949 /DB_XREF=EST189491 /CLONE=RHEAI04 /FEA=EST /CNT=43 /TID=Rn.1668.1 /TIER=Stack /STK=20 /UG=Rn.1668 /UG_TITLE=ESTs, Highly similar to S57500 signal recognition particle - mouse (M.musculus) AA799994 signal recognition particle 14 Srp14 296076 NM_001106497 0006614 // SRP-dependent cotranslational protein targeting to membrane // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0045047 // protein targeting to ER // not recorded /// 0045047 // protein targeting to ER // inferred from electronic annotation /// 0045900 // negative regulation of translational elongation // inferred from electronic annotation 0005786 // signal recognition particle, endoplasmic reticulum targeting // inferred from electronic annotation /// 0005786 // signal recognition particle, endoplasmic reticulum targeting // not recorded /// 0048500 // signal recognition particle // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008312 // 7S RNA binding // inferred from electronic annotation /// 0030942 // endoplasmic reticulum signal peptide binding // inferred from electronic annotation 1367477_at BM386162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386162 /DB_XREF=gi:18186215 /DB_XREF=UI-R-CN1-cjf-k-01-0-UI.s1 /CLONE=UI-R-CN1-cjf-k-01-0-UI /FEA=EST /CNT=22 /TID=Rn.6046.1 /TIER=Stack /STK=20 /UG=Rn.6046 /UG_TITLE=ESTs, Moderately similar to I60307 beta-galactosidase, alpha peptide - Escherichia coli (E.coli) BM386162 mitochondrial ribosomal protein L53 Mrpl53 362388 NM_001108635 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 1367478_at AI600136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600136 /DB_XREF=gi:4609184 /DB_XREF=EST251839 /CLONE=REMDU62 /FEA=EST /CNT=22 /TID=Rn.813.1 /TIER=Stack /STK=19 /UG=Rn.813 /UG_TITLE=ESTs, Highly similar to HRA2_MOUSE Serine protease HTRA2 (M.musculus) AI600136 HtrA serine peptidase 2 Htra2 297376 NM_001106599 0006508 // proteolysis // inferred from electronic annotation /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0007628 // adult walking behavior // inferred from electronic annotation /// 0007628 // adult walking behavior // not recorded /// 0008344 // adult locomotory behavior // not recorded /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008629 // induction of apoptosis by intracellular signals // inferred from electronic annotation /// 0008629 // induction of apoptosis by intracellular signals // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0048666 // neuron development // inferred from electronic annotation /// 0048666 // neuron development // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // not recorded /// 0005829 // cytosol // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008236 // serine-type peptidase activity // inferred from mutant phenotype 1367479_at AI599994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599994 /DB_XREF=gi:4609042 /DB_XREF=EST251697 /CLONE=REMEK34 /FEA=EST /CNT=24 /TID=Rn.17615.1 /TIER=Stack /STK=19 /UG=Rn.17615 /UG_TITLE=ESTs, Weakly similar to S78745 protein YHR072w-a - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AI599994 NOP10 ribonucleoprotein homolog (yeast) Nop10 691534 NM_001126100 0005515 // protein binding // not recorded 1367480_at AI230248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230248 /DB_XREF=gi:3814135 /DB_XREF=EST226943 /CLONE=REMCU13 /FEA=EST /CNT=23 /TID=Rn.8855.1 /TIER=Stack /STK=18 /UG=Rn.8855 /UG_TITLE=ESTs, Weakly similar to A42811 nuclear RNA helicase (R.norvegicus) AI230248 eukaryotic translation initiation factor 4A, isoform 3 Eif4a3 688288 NM_001100158 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1367481_at BI278301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278301 /DB_XREF=gi:14925012 /DB_XREF=UI-R-CY0-bxr-h-02-0-UI.s1 /CLONE=UI-R-CY0-bxr-h-02-0-UI /FEA=EST /CNT=19 /TID=Rn.36912.1 /TIER=Stack /STK=18 /UG=Rn.36912 /UG_TITLE=ESTs, Highly similar to VP28_HUMAN VPS28 protein homolog (H.sapiens) BI278301 vacuolar protein sorting 28 homolog (S. cerevisiae) Vps28 300052 NM_001130492 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0031397 // negative regulation of protein ubiquitination // not recorded /// 0031397 // negative regulation of protein ubiquitination // inferred from sequence or structural similarity 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1367482_at AI172459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172459 /DB_XREF=gi:3712499 /DB_XREF=EST218470 /CLONE=RMUCA14 /FEA=EST /CNT=31 /TID=Rn.3964.1 /TIER=Stack /STK=17 /UG=Rn.3964 /UG_TITLE=ESTs, Weakly similar to T51146 ring-box protein 1 (H.sapiens) AI172459 anaphase promoting complex subunit 11 Anapc11 498030 NM_001126082 0016567 // protein ubiquitination // not recorded /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070979 // protein K11-linked ubiquitination // not recorded 0005654 // nucleoplasm // not recorded /// 0005680 // anaphase-promoting complex // not recorded /// 0005829 // cytosol // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367483_at AI170657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170657 /DB_XREF=gi:3710697 /DB_XREF=EST216592 /CLONE=RMUAZ56 /FEA=EST /CNT=27 /TID=Rn.2448.1 /TIER=Stack /STK=17 /UG=Rn.2448 /UG_TITLE=ESTs, Weakly similar to T46473 hypothetical protein DKFZp434O1230.1 (H.sapiens) AI170657 similar to RIKEN cDNA 3110001D03 RGD1309148 298147 XM_001067663 /// XM_216433 1367484_at BM391175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391175 /DB_XREF=gi:18191228 /DB_XREF=UI-R-DY0-ckq-g-01-0-UI.s1 /CLONE=UI-R-DY0-ckq-g-01-0-UI /FEA=EST /CNT=23 /TID=Rn.3348.1 /TIER=Stack /STK=17 /UG=Rn.3348 /UG_TITLE=ESTs, Weakly similar to UBIQUITIN-CONJUGATING ENZYME E2-17 KD 3 (R.norvegicus) BM391175 ubiquitin-conjugating enzyme E2E 1-like /// ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) LOC100366017 /// Ube2e2 100366017 /// 361013 NM_001108371 /// XM_002725032 0032020 // ISG15-protein conjugation // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070534 // protein K63-linked ubiquitination // not recorded /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0070979 // protein K11-linked ubiquitination // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation /// 0042296 // ISG15 ligase activity // not recorded 1367485_at BM388871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388871 /DB_XREF=gi:18188924 /DB_XREF=UI-R-DZ0-ckn-m-02-0-UI.s1 /CLONE=UI-R-DZ0-ckn-m-02-0-UI /FEA=EST /CNT=20 /TID=Rn.6738.1 /TIER=Stack /STK=17 /UG=Rn.6738 /UG_TITLE=ESTs BM388871 transcription elongation factor A (SII) 1 Tcea1 362479 NM_001025735 0006350 // transcription // inferred from electronic annotation /// 0006354 // RNA elongation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003711 // transcription elongation regulator activity // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367486_at BM386412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386412 /DB_XREF=gi:18186465 /DB_XREF=UI-R-CN1-cjf-l-18-0-UI.s1 /CLONE=UI-R-CN1-cjf-l-18-0-UI /FEA=EST /CNT=18 /TID=Rn.3707.1 /TIER=Stack /STK=16 /UG=Rn.3707 /UG_TITLE=ESTs BM386412 ADP-ribosylation factor GTPase activating protein 2 Arfgap2 362162 NM_001033707 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367487_at BG378610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378610 /DB_XREF=gi:13303082 /DB_XREF=UI-R-CV1-bvr-e-06-0-UI.s1 /CLONE=UI-R-CV1-bvr-e-06-0-UI /FEA=EST /CNT=16 /TID=Rn.7423.1 /TIER=Stack /STK=15 /UG=Rn.7423 /UG_TITLE=ESTs, Moderately similar to B4G3_HUMAN BETA-1,4-GALACTOSYLTRANSFERASE 3 (BETA-1,4-GALTASE 3) (BETA4GAL-T3) (B4GAL-T3) (UDP-GALACTOSE:BETA-N-ACETYLGLUCOSAMINE BETA-1,4-GALACTOSYLTRANSFERASE 3) (UDP-GAL:BETA-GLCNAC BETA-1,4-GALACTOSYLTRANSFERASE 3) (INCLUDES: N-ACETYLLACTOSAMINE SYNTHASE (NAL SYNTHETASE); BETA-N-ACETYLGLUCOSAMINYL-GLYCOPEPTIDE BETA-1,4-GALACTOSYLTRANSFERASE ; BETA-N-ACETYLGLUCOSAMINYL-GLYCOLIPID BETA-1,4-GALACTOSYLTRANSFERASE ) (H.sapiens) BG378610 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3 B4galt3 494342 NM_001009539 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003831 // beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity // inferred from electronic annotation /// 0003945 // N-acetyllactosamine synthase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367488_at BM386411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386411 /DB_XREF=gi:18186464 /DB_XREF=UI-R-CN1-cjf-l-16-0-UI.s1 /CLONE=UI-R-CN1-cjf-l-16-0-UI /FEA=EST /CNT=20 /TID=Rn.17206.1 /TIER=Stack /STK=14 /UG=Rn.17206 /UG_TITLE=ESTs, Highly similar to T00353 hypothetical protein KIAA0697 (H.sapiens) BM386411 ankyrin repeat domain 17 Ankrd17 289521 NM_001105999 0003723 // RNA binding // inferred from electronic annotation 1367489_at BE114147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114147 /DB_XREF=gi:8506252 /DB_XREF=UI-R-BJ1-awj-f-06-0-UI.s1 /CLONE=UI-R-BJ1-awj-f-06-0-UI /FEA=EST /CNT=19 /TID=Rn.101.1 /TIER=Stack /STK=14 /UG=Rn.101 /UG_TITLE=ESTs BE114147 1367490_at AI102046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102046 /DB_XREF=gi:3706881 /DB_XREF=EST211335 /CLONE=RBRBY30 /FEA=EST /CNT=17 /TID=Rn.12596.1 /TIER=Stack /STK=14 /UG=Rn.12596 /UG_TITLE=ESTs AI102046 similar to defective SPErmatogenesis family member (spe-39) LOC681989 681989 NM_001101004 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from electronic annotation 1367491_at AI233249 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233249 /DB_XREF=gi:3817129 /DB_XREF=EST229937 /CLONE=RKIDC71 /FEA=EST /CNT=16 /TID=Rn.3450.1 /TIER=Stack /STK=14 /UG=Rn.3450 /UG_TITLE=ESTs AI233249 apoptosis inhibitor 5 Api5 362170 NM_001127379 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded 0005488 // binding // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // not recorded 1367492_at AI227785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227785 /DB_XREF=gi:3811672 /DB_XREF=EST224480 /CLONE=RBRCL50 /FEA=EST /CNT=16 /TID=Rn.8387.1 /TIER=Stack /STK=14 /UG=Rn.8387 /UG_TITLE=ESTs, Weakly similar to DNAJ PROTEIN HOMOLOG MTJ1 (M.musculus) AI227785 DnaJ (Hsp40) homolog, subfamily C, member 8 Dnajc8 313035 NM_001013168 0008380 // RNA splicing // not recorded 0031072 // heat shock protein binding // inferred from electronic annotation 1367493_at AI599288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599288 /DB_XREF=gi:4608336 /DB_XREF=EST250991 /CLONE=REMEQ42 /FEA=EST /CNT=17 /TID=Rn.6986.1 /TIER=Stack /STK=14 /UG=Rn.6986 /UG_TITLE=ESTs, Moderately similar to I38333 ARD1 N-acetyl transferase homolog (H.sapiens) AI599288 similar to DNA segment, Chr 18, Wayne State University 98, expressed RGD1560212 498890 NM_001077676 0008152 // metabolic process // inferred from electronic annotation 0008080 // N-acetyltransferase activity // inferred from electronic annotation 1367494_at AW523764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523764 /DB_XREF=gi:7166149 /DB_XREF=UI-R-BO0-aih-h-01-0-UI.s1 /CLONE=UI-R-BO0-aih-h-01-0-UI /FEA=EST /CNT=17 /TID=Rn.1198.1 /TIER=Stack /STK=13 /UG=Rn.1198 /UG_TITLE=ESTs, Highly similar to AF132969 1 CGI-35 protein (H.sapiens) AW523764 similar to CGI-35 protein RGD1310899 299198 NM_001044235 1367495_at AI412457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412457 /DB_XREF=gi:4255961 /DB_XREF=EST240756 /CLONE=RBRDO40 /FEA=EST /CNT=18 /TID=Rn.7374.1 /TIER=Stack /STK=13 /UG=Rn.7374 /UG_TITLE=ESTs, Highly similar to prefoldin 4 (Homo sapiens) (H.sapiens) AI412457 prefoldin subunit 4-like LOC100366237 100366237 XM_002726276 0006457 // protein folding // inferred from electronic annotation 0016272 // prefoldin complex // inferred from electronic annotation 0051082 // unfolded protein binding // inferred from electronic annotation /// 0051087 // chaperone binding // inferred from electronic annotation 1367496_at AI179901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179901 /DB_XREF=gi:3730539 /DB_XREF=EST223632 /CLONE=RSPCN46 /FEA=EST /CNT=20 /TID=Rn.11839.1 /TIER=Stack /STK=12 /UG=Rn.11839 /UG_TITLE=ESTs, Highly similar to T9S2_MOUSE Transmembrane 9 superfamily protein member 2 precursor (M.musculus) AI179901 transmembrane 9 superfamily member 2 Tm9sf2 306197 NM_001005554 0005768 // endosome // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1367497_at AA851302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851302 /DB_XREF=gi:4131923 /DB_XREF=EST194070 /CLONE=RPLAF01 /FEA=EST /CNT=13 /TID=Rn.17232.1 /TIER=Stack /STK=12 /UG=Rn.17232 /UG_TITLE=ESTs AA851302 phosphatidylserine synthase 1 Ptdss1 314553 NM_001012113 0006659 // phosphatidylserine biosynthetic process // inferred from electronic annotation 1367498_at AI177873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177873 /DB_XREF=gi:3728511 /DB_XREF=EST221522 /CLONE=RPLCH69 /FEA=EST /CNT=14 /TID=Rn.16949.1 /TIER=Stack /STK=12 /UG=Rn.16949 /UG_TITLE=ESTs AI177873 YTH domain family, member 1 Ythdf1 296467 NM_001024756 1367499_at BM390900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390900 /DB_XREF=gi:18190953 /DB_XREF=UI-R-CN1-cjp-i-09-0-UI.s1 /CLONE=UI-R-CN1-cjp-i-09-0-UI /FEA=EST /CNT=16 /TID=Rn.3950.1 /TIER=Stack /STK=11 /UG=Rn.3950 /UG_TITLE=ESTs, Weakly similar to T20120 hypothetical protein C50F4.14 - Caenorhabditis elegans (C.elegans) BM390900 solute carrier family 35, member C1 Slc35c1 311204 NM_001107748 0030259 // lipid glycosylation // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1367500_at AI169461 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169461 /DB_XREF=gi:3705769 /DB_XREF=EST215314 /CLONE=RKIBS69 /FEA=EST /CNT=16 /TID=Rn.8472.1 /TIER=Stack /STK=11 /UG=Rn.8472 /UG_TITLE=ESTs, Highly similar to DSS1_HUMAN DELETED IN SPLIT HANDSPLIT FOOT PROTEIN 1 (M.musculus) AI169461 split hand/foot malformation (ectrodactyly) type 1 Shfm1 680532 NM_001126090 0000724 // double-strand break repair via homologous recombination // not recorded /// 0006508 // proteolysis // not recorded 0000502 // proteasome complex // not recorded /// 0032039 // integrator complex // not recorded 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // not recorded 1367501_at BM383845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383845 /DB_XREF=gi:18183898 /DB_XREF=UI-R-DM1-ckc-c-02-0-UI.s1 /CLONE=UI-R-DM1-ckc-c-02-0-UI /FEA=EST /CNT=19 /TID=Rn.2930.1 /TIER=Stack /STK=11 /UG=Rn.2930 /UG_TITLE=ESTs BM383845 signal recognition particle 72 Srp72 498351 NM_001170601 /// XM_001066751 /// XM_001074215 0006614 // SRP-dependent cotranslational protein targeting to membrane // inferred from electronic annotation /// 0042493 // response to drug // not recorded 0005786 // signal recognition particle, endoplasmic reticulum targeting // not recorded /// 0048500 // signal recognition particle // inferred from electronic annotation 0005047 // signal recognition particle binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0008312 // 7S RNA binding // inferred from electronic annotation 1367502_at BI287857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287857 /DB_XREF=gi:14943881 /DB_XREF=UI-R-CW0s-ccm-a-10-0-UI.s1 /CLONE=UI-R-CW0s-ccm-a-10-0-UI /FEA=EST /CNT=19 /TID=Rn.22778.1 /TIER=Stack /STK=11 /UG=Rn.22778 /UG_TITLE=ESTs, Weakly similar to F43C1.3.p (Caenorhabditis elegans) (C.elegans) BI287857 mitochondrial ribosomal protein L21 Mrpl21 309140 NM_001107567 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation 1367503_at AI409930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409930 /DB_XREF=gi:4253434 /DB_XREF=EST238223 /CLONE=RPLDN79 /FEA=EST /CNT=15 /TID=Rn.3358.1 /TIER=Stack /STK=11 /UG=Rn.3358 /UG_TITLE=ESTs, Highly similar to S71116 BCR-associated protein BAP31 - mouse (M.musculus) AI409930 B-cell receptor-associated protein 31 Bcap31 293852 NM_001004224 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0006955 // immune response // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0000139 // Golgi membrane // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367504_at AI411286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411286 /DB_XREF=gi:4254790 /DB_XREF=EST239580 /CLONE=RKIEO63 /FEA=EST /CNT=12 /TID=Rn.16597.1 /TIER=Stack /STK=11 /UG=Rn.16597 /UG_TITLE=ESTs AI411286 1367505_at AW916491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916491 /DB_XREF=gi:8082218 /DB_XREF=EST347795 /CLONE=RGIDQ86 /FEA=EST /CNT=17 /TID=Rn.8773.1 /TIER=Stack /STK=10 /UG=Rn.8773 /UG_TITLE=ESTs AW916491 zinc finger protein 644 Znf644 305127 NM_001139484 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1367506_at BF283488 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283488 /DB_XREF=gi:11214558 /DB_XREF=EST448079 /CLONE=RGIED08 /FEA=EST /CNT=15 /TID=Rn.3762.1 /TIER=Stack /STK=10 /UG=Rn.3762 /UG_TITLE=ESTs, Weakly similar to Ribosomal protein L11 (Caenorhabditis elegans) (C.elegans) BF283488 mitochondrial ribosomal protein L11 mrpl11 293666 NM_001006973 0006412 // translation // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005762 // mitochondrial large ribosomal subunit // inferred from electronic annotation /// 0005762 // mitochondrial large ribosomal subunit // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1367507_at BI281661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281661 /DB_XREF=gi:14931620 /DB_XREF=UI-R-CT0s-cav-a-04-0-UI.s1 /CLONE=UI-R-CT0s-cav-a-04-0-UI /FEA=EST /CNT=13 /TID=Rn.1934.1 /TIER=Stack /STK=10 /UG=Rn.1934 /UG_TITLE=ESTs BI281661 nudix (nucleoside diphosphate linked moiety X)-type motif 22 Nudt22 293703 NM_199090 1367508_at BI281225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281225 /DB_XREF=gi:14930744 /DB_XREF=UI-R-CT0s-cat-h-02-0-UI.s1 /CLONE=UI-R-CT0s-cat-h-02-0-UI /FEA=EST /CNT=10 /TID=Rn.20990.1 /TIER=Stack /STK=10 /UG=Rn.20990 /UG_TITLE=ESTs BI281225 RGD1565784 RGD1565784 497874 NM_001109028 1367509_at AI231812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231812 /DB_XREF=gi:3815692 /DB_XREF=EST228500 /CLONE=RHECO58 /FEA=EST /CNT=31 /TID=Rn.2376.1 /TIER=Stack /STK=9 /UG=Rn.2376 /UG_TITLE=ESTs AI231812 general transcription factor IIH, polypeptide 5 Gtf2h5 502227 NM_001126088 0006289 // nucleotide-excision repair // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1367510_at BG381690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381690 /DB_XREF=gi:13306162 /DB_XREF=UI-R-CT0-bue-c-07-0-UI.s1 /CLONE=UI-R-CT0-bue-c-07-0-UI /FEA=EST /CNT=19 /TID=Rn.4142.1 /TIER=Stack /STK=9 /UG=Rn.4142 /UG_TITLE=ESTs BG381690 thioredoxin domain containing 15 Txndc15 307180 NM_001024998 0006259 // DNA metabolic process // inferred from electronic annotation /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1367511_at BI285459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285459 /DB_XREF=gi:14939118 /DB_XREF=UI-R-DD0-caa-d-05-0-UI.s1 /CLONE=UI-R-DD0-caa-d-05-0-UI /FEA=EST /CNT=17 /TID=Rn.1442.1 /TIER=Stack /STK=9 /UG=Rn.1442 /UG_TITLE=ESTs, Highly similar to NICA_MOUSE NICASTRIN PRECURSOR (M.musculus) BI285459 nicastrin Ncstn 289231 NM_174864 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0006509 // membrane protein ectodomain proteolysis // inferred from sequence or structural similarity /// 0006915 // apoptosis // not recorded /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0016485 // protein processing // inferred from expression pattern /// 0016485 // protein processing // not recorded /// 0016485 // protein processing // inferred from sequence or structural similarity /// 0016485 // protein processing // inferred from electronic annotation /// 0031293 // membrane protein intracellular domain proteolysis // not recorded /// 0043085 // positive regulation of catalytic activity // not recorded /// 0043085 // positive regulation of catalytic activity // inferred from sequence or structural similarity 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from direct assay 1367512_at AA998435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998435 /DB_XREF=gi:4289839 /DB_XREF=UI-R-C0-ib-e-07-0-UI.s1 /CLONE=UI-R-C0-ib-e-07-0-UI /FEA=EST /CNT=18 /TID=Rn.9339.1 /TIER=Stack /STK=9 /UG=Rn.9339 /UG_TITLE=ESTs, Weakly similar to T31875 hypothetical protein F41E6.9 - Caenorhabditis elegans (C.elegans) AA998435 chromatin modifying protein 5 Chmp5 297995 NM_001025410 0001919 // regulation of receptor recycling // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0007040 // lysosome organization // not recorded /// 0008333 // endosome to lysosome transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1367513_at BI284935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284935 /DB_XREF=gi:14938076 /DB_XREF=UI-R-DB0-byu-c-01-0-UI.s1 /CLONE=UI-R-DB0-byu-c-01-0-UI /FEA=EST /CNT=14 /TID=Rn.11598.1 /TIER=Stack /STK=9 /UG=Rn.11598 /UG_TITLE=ESTs, Weakly similar to T9S2_MOUSE Transmembrane 9 superfamily protein member 2 precursor (M.musculus) BI284935 Transmembrane 9 superfamily protein member 4 Tm9sf4 296279 NM_001025649 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1367514_at AI235508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235508 /DB_XREF=gi:3829014 /DB_XREF=EST232070 /CLONE=ROVCS82 /FEA=EST /CNT=12 /TID=Rn.6279.1 /TIER=Stack /STK=9 /UG=Rn.6279 /UG_TITLE=ESTs AI235508 similar to RIKEN cDNA 9030624J02 LOC361635 361635 NM_001017463 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1367515_at BE111850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111850 /DB_XREF=gi:8503955 /DB_XREF=UI-R-BJ1-avz-e-04-0-UI.s1 /CLONE=UI-R-BJ1-avz-e-04-0-UI /FEA=EST /CNT=19 /TID=Rn.6565.1 /TIER=Stack /STK=9 /UG=Rn.6565 /UG_TITLE=ESTs, Highly similar to CAF1 MOUSE CCR4-ASSOCIATED FACTOR 1 (M.musculus) BE111850 CCR4-NOT transcription complex, subunit 7 Cnot7 306492 NM_001107313 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0030014 // CCR4-NOT complex // not recorded /// 0030014 // CCR4-NOT complex // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation 1367516_at BG375549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375549 /DB_XREF=gi:13300021 /DB_XREF=UI-R-CV1-btc-f-01-0-UI.s1 /CLONE=UI-R-CV1-btc-f-01-0-UI /FEA=EST /CNT=10 /TID=Rn.12523.1 /TIER=Stack /STK=9 /UG=Rn.12523 /UG_TITLE=ESTs BG375549 distrobrevin binding protein 1 Dtnbp1 641528 NM_001037664 0031175 // neuron projection development // inferred from sequence or structural similarity /// 0031532 // actin cytoskeleton reorganization // inferred from sequence or structural similarity /// 0048812 // neuron projection morphogenesis // inferred from sequence or structural similarity /// 0060159 // regulation of dopamine receptor signaling pathway // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from sequence or structural similarity /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from sequence or structural similarity /// 0030054 // cell junction // inferred from electronic annotation /// 0030426 // growth cone // inferred from sequence or structural similarity /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from direct assay /// 0030672 // synaptic vesicle membrane // inferred from sequence or structural similarity /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0033162 // melanosome membrane // inferred from electronic annotation /// 0033267 // axon part // inferred from sequence or structural similarity /// 0043005 // neuron projection // inferred from sequence or structural similarity /// 0043197 // dendritic spine // inferred from sequence or structural similarity /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation 1367517_at BG373057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373057 /DB_XREF=gi:13269594 /DB_XREF=UI-R-CV1-bsf-a-06-0-UI.s1 /CLONE=UI-R-CV1-bsf-a-06-0-UI /FEA=EST /CNT=9 /TID=Rn.4203.1 /TIER=Stack /STK=9 /UG=Rn.4203 /UG_TITLE=ESTs BG373057 1367518_at BI274976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274976 /DB_XREF=gi:14886393 /DB_XREF=UI-R-CX0-bwt-c-04-0-UI.s1 /CLONE=UI-R-CX0-bwt-c-04-0-UI /FEA=EST /CNT=17 /TID=Rn.11858.1 /TIER=Stack /STK=8 /UG=Rn.11858 /UG_TITLE=ESTs BI274976 fat mass and obesity associated Fto 291905 NM_001039713 0001659 // temperature homeostasis // inferred from electronic annotation /// 0001659 // temperature homeostasis // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006307 // DNA dealkylation involved in DNA repair // not recorded /// 0006307 // DNA dealkylation involved in DNA repair // inferred from sequence or structural similarity /// 0006307 // DNA dealkylation involved in DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010883 // regulation of lipid storage // inferred from electronic annotation /// 0010883 // regulation of lipid storage // not recorded /// 0035552 // oxidative single-stranded DNA demethylation // not recorded /// 0035552 // oxidative single-stranded DNA demethylation // inferred from sequence or structural similarity /// 0035552 // oxidative single-stranded DNA demethylation // inferred from electronic annotation /// 0035553 // oxidative single-stranded RNA demethylation // inferred from electronic annotation /// 0035553 // oxidative single-stranded RNA demethylation // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0042245 // RNA repair // inferred from electronic annotation /// 0042245 // RNA repair // not recorded /// 0044065 // regulation of respiratory system process // inferred from electronic annotation /// 0044065 // regulation of respiratory system process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060612 // adipose tissue development // inferred from electronic annotation /// 0060612 // adipose tissue development // not recorded /// 0070350 // regulation of white fat cell proliferation // inferred from electronic annotation /// 0070350 // regulation of white fat cell proliferation // not recorded /// 0070989 // oxidative demethylation // inferred from electronic annotation /// 0070989 // oxidative demethylation // not recorded /// 0080111 // DNA demethylation // inferred from electronic annotation /// 0080111 // DNA demethylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0008198 // ferrous iron binding // not recorded /// 0008198 // ferrous iron binding // inferred from sequence or structural similarity /// 0008198 // ferrous iron binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0035515 // oxidative RNA demethylase activity // inferred from electronic annotation /// 0035515 // oxidative RNA demethylase activity // not recorded /// 0035516 // oxidative DNA demethylase activity // not recorded /// 0035516 // oxidative DNA demethylase activity // inferred from sequence or structural similarity /// 0035516 // oxidative DNA demethylase activity // inferred from electronic annotation /// 0043734 // DNA-N1-methyladenine dioxygenase activity // not recorded /// 0043734 // DNA-N1-methyladenine dioxygenase activity // inferred from sequence or structural similarity /// 0043734 // DNA-N1-methyladenine dioxygenase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367519_at BG373087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373087 /DB_XREF=gi:13269624 /DB_XREF=UI-R-CV1-bsf-d-03-0-UI.s1 /CLONE=UI-R-CV1-bsf-d-03-0-UI /FEA=EST /CNT=16 /TID=Rn.12390.1 /TIER=Stack /STK=8 /UG=Rn.12390 /UG_TITLE=ESTs, Weakly similar to A34581 oxysterol-binding protein (H.sapiens) BG373087 oxysterol binding protein-like 2 Osbpl2 296461 NM_001013079 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation 1367520_at AI231050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231050 /DB_XREF=gi:3814930 /DB_XREF=EST227738 /CLONE=REMDE65 /FEA=EST /CNT=16 /TID=Rn.14886.1 /TIER=Stack /STK=8 /UG=Rn.14886 /UG_TITLE=ESTs, Weakly similar to T26528 hypothetical protein Y18D10A.3 - Caenorhabditis elegans (C.elegans) AI231050 apolipoprotein A-I binding protein Apoa1bp 295229 NM_001106440 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367521_at BI281185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281185 /DB_XREF=gi:14930665 /DB_XREF=UI-R-CT0s-cat-d-02-0-UI.s1 /CLONE=UI-R-CT0s-cat-d-02-0-UI /FEA=EST /CNT=10 /TID=Rn.7260.1 /TIER=Stack /STK=8 /UG=Rn.7260 /UG_TITLE=ESTs BI281185 1367522_at AA894324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894324 /DB_XREF=gi:3021203 /DB_XREF=EST198127 /CLONE=RSPAW65 /FEA=EST /CNT=11 /TID=Rn.7795.1 /TIER=Stack /STK=7 /UG=Rn.7795 /UG_TITLE=ESTs, Highly similar to F8I2 MOUSE FACTOR VIII INTRON 22 PROTEIN (M.musculus) AA894324 coagulation factor VIII-associated (intronic transcript) 1 F8a1 501661 NM_001109323 0005634 // nucleus // not recorded 0005488 // binding // inferred from electronic annotation 1367523_at AI409145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409145 /DB_XREF=gi:4252649 /DB_XREF=EST237437 /CLONE=ROVEO08 /FEA=EST /CNT=10 /TID=Rn.24899.1 /TIER=Stack /STK=7 /UG=Rn.24899 /UG_TITLE=ESTs, Weakly similar to T29507 hypothetical protein W05H7.3 - Caenorhabditis elegans (C.elegans) AI409145 trafficking protein particle complex 2-like Trappc2l 292074 NM_001106193 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 1367524_at AW533822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533822 /DB_XREF=gi:7176236 /DB_XREF=UI-R-BU0-anc-e-07-0-UI.s1 /CLONE=UI-R-BU0-anc-e-07-0-UI /FEA=EST /CNT=9 /TID=Rn.12412.1 /TIER=Stack /STK=7 /UG=Rn.12412 /UG_TITLE=ESTs AW533822 zinc finger protein 592 Znf592 293038 NM_001106272 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1367525_at AI179833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179833 /DB_XREF=gi:3730471 /DB_XREF=EST223563 /CLONE=RSPCM53 /FEA=EST /CNT=10 /TID=Rn.25107.1 /TIER=Stack /STK=7 /UG=Rn.25107 /UG_TITLE=ESTs AI179833 thyroid hormone receptor associated protein 3 Thrap3 313591 NM_001009693 0006350 // transcription // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0030518 // steroid hormone receptor signaling pathway // not recorded /// 0030521 // androgen receptor signaling pathway // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0016592 // mediator complex // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003712 // transcription cofactor activity // not recorded /// 0003713 // transcription coactivator activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016455 // RNA polymerase II transcription mediator activity // not recorded /// 0016563 // transcription activator activity // not recorded /// 0046966 // thyroid hormone receptor binding // not recorded 1367526_at AI180224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180224 /DB_XREF=gi:3730862 /DB_XREF=EST223967 /CLONE=RSPCS15 /FEA=EST /CNT=8 /TID=Rn.8520.1 /TIER=Stack /STK=7 /UG=Rn.8520 /UG_TITLE=ESTs AI180224 mitochondrial ribosomal protein S26 Mrps26 362216 NM_001013206 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 1367527_at AI600258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600258 /DB_XREF=gi:4609306 /DB_XREF=EST251961 /CLONE=REMEQ20 /FEA=EST /CNT=7 /TID=Rn.17015.1 /TIER=Stack /STK=7 /UG=Rn.17015 /UG_TITLE=ESTs AI600258 similar to Importin-8 (Imp8) (Ran-binding protein 8) (RanBP8) LOC686774 686774 XR_085827 1367528_at BE103273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103273 /DB_XREF=gi:8495372 /DB_XREF=UI-R-BX0-aqy-f-06-0-UI.s1 /CLONE=UI-R-BX0-aqy-f-06-0-UI /FEA=EST /CNT=11 /TID=Rn.812.1 /TIER=Stack /STK=6 /UG=Rn.812 /UG_TITLE=ESTs BE103273 F-box and WD repeat domain containing 8 Fbxw8 304522 NM_001107145 0060712 // spongiotrophoblast layer development // not recorded /// 0060716 // labyrinthine layer blood vessel development // not recorded 0019005 // SCF ubiquitin ligase complex // not recorded 0005515 // protein binding // not recorded 1367529_at BE113989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113989 /DB_XREF=gi:8506094 /DB_XREF=UI-R-BJ1-awi-g-06-0-UI.s1 /CLONE=UI-R-BJ1-awi-g-06-0-UI /FEA=EST /CNT=16 /TID=Rn.1596.1 /TIER=Stack /STK=6 /UG=Rn.1596 /UG_TITLE=ESTs BE113989 Der1-like domain family, member 1 Derl1 362912 NM_001014202 0030433 // ER-associated protein catabolic process // inferred from electronic annotation /// 0030433 // ER-associated protein catabolic process // not recorded /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // not recorded /// 0030970 // retrograde protein transport, ER to cytosol // inferred from electronic annotation /// 0030970 // retrograde protein transport, ER to cytosol // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042288 // MHC class I protein binding // inferred from electronic annotation /// 0042288 // MHC class I protein binding // not recorded 1367530_at AI412967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412967 /DB_XREF=gi:4256471 /DB_XREF=EST241267 /CLONE=RBRED56 /FEA=EST /CNT=9 /TID=Rn.23890.1 /TIER=Stack /STK=6 /UG=Rn.23890 /UG_TITLE=ESTs AI412967 syntaxin 16 Stx16 362283 NM_001108610 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // not recorded 0016020 // membrane // inferred from electronic annotation 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005484 // SNAP receptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1367531_at BG666846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666846 /DB_XREF=gi:13888768 /DB_XREF=DRACNE03 /CLONE=DRACNE03 /FEA=EST /CNT=39 /TID=Rn.2880.1 /TIER=Stack /STK=7 /UG=Rn.2880 /UG_TITLE=ESTs BG666846 eukaryotic translation initiation factor 4H Eif4h 288599 NM_001006957 0006412 // translation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367532_at AA893186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893186 /DB_XREF=gi:3020065 /DB_XREF=EST196989 /CLONE=RKIBD28 /FEA=EST /CNT=36 /TID=Rn.1570.1 /TIER=Stack /STK=7 /UG=Rn.1570 /UG_TITLE=ESTs AA893186 DAZ associated protein 2 Dazap2 300235 NM_001013107 0005515 // protein binding // inferred from electronic annotation 1367533_at BG663097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663097 /DB_XREF=gi:13885019 /DB_XREF=DRA08C01 /CLONE=DRA08C01 /FEA=EST /CNT=19 /TID=Rn.25007.1 /TIER=Stack /STK=7 /UG=Rn.25007 /UG_TITLE=ESTs BG663097 elongation protein 2 homolog (S. cerevisiae) Elp2 307545 NM_001034145 0006350 // transcription // inferred from electronic annotation /// 0006368 // RNA elongation from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0043248 // proteasome assembly // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0046425 // regulation of JAK-STAT cascade // inferred from electronic annotation /// 0046425 // regulation of JAK-STAT cascade // not recorded 0000502 // proteasome complex // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0008023 // transcription elongation factor complex // not recorded 0003677 // DNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0061133 // endopeptidase activator activity // inferred from sequence or structural similarity 1367534_at BG374688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374688 /DB_XREF=gi:13299160 /DB_XREF=UI-R-CV1-bsq-c-06-0-UI.s1 /CLONE=UI-R-CV1-bsq-c-06-0-UI /FEA=EST /CNT=11 /TID=Rn.17952.1 /TIER=Stack /STK=6 /UG=Rn.17952 /UG_TITLE=ESTs BG374688 RAB GTPase activating protein 1 Rabgap1 311911 NM_001107841 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1367535_at BG373523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373523 /DB_XREF=gi:13270060 /DB_XREF=UI-R-CS0-bsd-g-08-0-UI.s1 /CLONE=UI-R-CS0-bsd-g-08-0-UI /FEA=EST /CNT=7 /TID=Rn.9129.1 /TIER=ConsEnd /STK=5 /UG=Rn.9129 /UG_TITLE=ESTs, Highly similar to T12543 hypothetical protein DKFZp434M154.1 (H.sapiens) BG373523 interferon regulatory factor 2 binding protein 1 Irf2bp1 308404 NM_001107483 1367536_at AI172106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172106 /DB_XREF=gi:3712146 /DB_XREF=EST218101 /CLONE=RMUBV02 /FEA=EST /CNT=6 /TID=Rn.15452.1 /TIER=ConsEnd /STK=5 /UG=Rn.15452 /UG_TITLE=ESTs, Weakly similar to ZC373.5.p (Caenorhabditis elegans) (C.elegans) AI172106 APAF1 interacting protein Apip 295961 NM_001106492 0043066 // negative regulation of apoptosis // not recorded /// 0071267 // L-methionine salvage // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0043167 // ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367537_at AI012479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012479 /DB_XREF=gi:3226311 /DB_XREF=EST206930 /CLONE=RPLAX74 /FEA=EST /CNT=12 /TID=Rn.13285.1 /TIER=ConsEnd /STK=4 /UG=Rn.13285 /UG_TITLE=ESTs AI012479 eukaryotic translation initiation factor 4E nuclear import factor 1 Eif4enif1 305468 NM_001107230 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005515 // protein binding // not recorded 1367538_at BF284303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284303 /DB_XREF=gi:11215373 /DB_XREF=EST448894 /CLONE=RGIEO12 /FEA=EST /CNT=8 /TID=Rn.23398.1 /TIER=ConsEnd /STK=4 /UG=Rn.23398 /UG_TITLE=ESTs BF284303 1367539_at AI170357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170357 /DB_XREF=gi:4134494 /DB_XREF=EST216283 /CLONE=RLUCH32 /FEA=EST /CNT=9 /TID=Rn.24468.1 /TIER=ConsEnd /STK=4 /UG=Rn.24468 /UG_TITLE=ESTs AI170357 1367540_at AI044872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044872 /DB_XREF=gi:3291691 /DB_XREF=UI-R-C1-kd-f-09-0-UI.s1 /CLONE=UI-R-C1-kd-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.16048.1 /TIER=ConsEnd /STK=4 /UG=Rn.16048 /UG_TITLE=ESTs AI044872 zinc finger, FYVE domain containing 26 Zfyve26 314265 NM_001108038 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367541_at BE113965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113965 /DB_XREF=gi:8506070 /DB_XREF=UI-R-BJ1-awi-e-04-0-UI.s1 /CLONE=UI-R-BJ1-awi-e-04-0-UI /FEA=EST /CNT=7 /TID=Rn.40464.1 /TIER=ConsEnd /STK=3 /UG=Rn.40464 /UG_TITLE=ESTs, Weakly similar to methylase (Caenorhabditis elegans) (C.elegans) BE113965 methyltransferase like 5 Mettl5 502632 NM_001114181 0032259 // methylation // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation 1367542_at AI411793 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411793 /DB_XREF=gi:4255297 /DB_XREF=EST240087 /CLONE=RKIDN11 /FEA=EST /CNT=11 /TID=Rn.15048.1 /TIER=ConsEnd /STK=2 /UG=Rn.15048 /UG_TITLE=ESTs, Weakly similar to T47146 hypothetical protein DKFZp761C169.1 (H.sapiens) AI411793 GC-rich promoter binding protein 1-like 1 /// vasculin-like protein 1-like Gpbp1l1 /// LOC100364632 100364632 /// 313519 NM_001034913 /// XM_002725016 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1367543_at BG377443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377443 /DB_XREF=gi:13301915 /DB_XREF=UI-R-CU0-buy-f-06-0-UI.s1 /CLONE=UI-R-CU0-buy-f-06-0-UI /FEA=EST /CNT=12 /TID=Rn.22767.1 /TIER=ConsEnd /STK=2 /UG=Rn.22767 /UG_TITLE=ESTs, Weakly similar to YJA4_YEAST HYPOTHETICAL 23.7 KD PROTEIN IN CYR1-OST1 INTERGENIC REGION (S.cerevisiae) BG377443 similar to Protein SYS1 homolog LOC685079 685079 XM_001062200 /// XM_002726293 1367544_at BE120556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120556 /DB_XREF=gi:8512661 /DB_XREF=UI-R-CA0-bat-h-02-0-UI.s1 /CLONE=UI-R-CA0-bat-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.6743.1 /TIER=ConsEnd /STK=2 /UG=Rn.6743 /UG_TITLE=ESTs BE120556 ring finger protein 111 Rnf111 300813 NM_001106836 0007389 // pattern specification process // not recorded /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046332 // SMAD binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1367545_at AI710043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI710043 /DB_XREF=gi:4999819 /DB_XREF=UI-R-C3-tm-g-11-0-UI.s1 /CLONE=UI-R-C3-tm-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.14944.1 /TIER=ConsEnd /STK=1 /UG=Rn.14944 /UG_TITLE=ESTs AI710043 RAB GTPase activating protein 1 Rabgap1 311911 NM_001107841 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1367546_at BM390298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390298 /DB_XREF=gi:18190351 /DB_XREF=UI-R-CN1-cjq-e-14-0-UI.s1 /CLONE=UI-R-CN1-cjq-e-14-0-UI /FEA=EST /CNT=9 /TID=Rn.12639.1 /TIER=ConsEnd /STK=0 /UG=Rn.12639 /UG_TITLE=ESTs, Weakly similar to T19441 hypothetical protein C25A1.13 - Caenorhabditis elegans (C.elegans) BM390298 mitochondrial ribosomal protein L43 Mrpl43 309440 NM_001107598 0005739 // mitochondrion // not recorded /// 0005762 // mitochondrial large ribosomal subunit // not recorded 0005515 // protein binding // not recorded 1367547_at BM388010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388010 /DB_XREF=gi:18188063 /DB_XREF=UI-R-CN1-cjl-e-11-0-UI.s1 /CLONE=UI-R-CN1-cjl-e-11-0-UI /FEA=EST /CNT=5 /TID=Rn.22885.1 /TIER=ConsEnd /STK=0 /UG=Rn.22885 /UG_TITLE=ESTs, Highly similar to Z198_MOUSE Zinc finger protein 198 (Fragment) (M.musculus) BM388010 zinc finger, MYM-type 2 Zmym2 305913 XM_001060431 /// XM_224241 0016605 // PML body // not recorded 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0031624 // ubiquitin conjugating enzyme binding // not recorded 1367548_at BE118462 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118462 /DB_XREF=gi:8510567 /DB_XREF=UI-R-BJ1-azp-h-05-0-UI.s1 /CLONE=UI-R-BJ1-azp-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.20390.1 /TIER=ConsEnd /STK=0 /UG=Rn.20390 /UG_TITLE=ESTs BE118462 suppressor of defective silencing 3 homolog (S. cerevisiae) Suds3 360819 XM_001080131 /// XM_341092 0016481 // negative regulation of transcription // not recorded 0016580 // Sin3 complex // not recorded 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042826 // histone deacetylase binding // not recorded 1367549_a_at BI282757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282757 /DB_XREF=gi:14933842 /DB_XREF=UI-R-CW0s-cce-h-01-0-UI.s1 /CLONE=UI-R-CW0s-cce-h-01-0-UI /FEA=EST /CNT=23 /TID=Rn.8074.1 /TIER=Stack /STK=18 /UG=Rn.8074 /UG_TITLE=ESTs, Highly similar to adaptor-related protein complex AP-3, delta subunit (Mus musculus) (M.musculus) BI282757 adaptor-related protein complex 3, delta 1 subunit Ap3d1 314633 NM_001100719 0006886 // intracellular protein transport // not recorded /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019882 // antigen processing and presentation // not recorded /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0048007 // antigen processing and presentation, exogenous lipid antigen via MHC class Ib // not recorded /// 0048007 // antigen processing and presentation, exogenous lipid antigen via MHC class Ib // inferred from electronic annotation /// 0051138 // positive regulation of NK T cell differentiation // not recorded /// 0051138 // positive regulation of NK T cell differentiation // inferred from electronic annotation /// 0061088 // regulation of sequestering of zinc ion // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 1367550_a_at BI287742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287742 /DB_XREF=gi:14943665 /DB_XREF=UI-R-CS0s-cbi-d-08-0-UI.s1 /CLONE=UI-R-CS0s-cbi-d-08-0-UI /FEA=EST /CNT=13 /TID=Rn.18949.1 /TIER=ConsEnd /STK=4 /UG=Rn.18949 /UG_TITLE=ESTs, Weakly similar to T28787 hypothetical protein C41D11.5 - Caenorhabditis elegans (C.elegans) BI287742 TM2 domain containing 1 Tm2d1 362545 NM_001108670 0007165 // signal transduction // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded 0005887 // integral to plasma membrane // not recorded 0001540 // beta-amyloid binding // not recorded /// 0004930 // G-protein coupled receptor activity // not recorded 1367551_a_at AI406693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406693 /DB_XREF=gi:4250197 /DB_XREF=EST234980 /CLONE=ROVDV60 /FEA=EST /CNT=3 /TID=Rn.19273.1 /TIER=ConsEnd /STK=3 /UG=Rn.19273 /UG_TITLE=ESTs, Highly similar to T08806 hypothetical protein DKFZp586I1023.1 (H.sapiens) AI406693 similar to CG14980-PB RGD1306410 360768 NM_001014126 0006350 // transcription // inferred from electronic annotation /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0000125 // PCAF complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1367552_at M25590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M25590.1 /DB_XREF=gi:202756 /FEA=FLmRNA /CNT=455 /TID=Rn.9942.1 /TIER=FL+Stack /STK=452 /UG=Rn.9942 /LL=24802 /UG_GENE=Svp4 /UG_TITLE=Seminal vesicle protein 4 /DEF=Rat androgen-dependent protein mRNA, complete cds. /FL=gb:NM_012662.1 gb:M25590.1 M25590 seminal vesicle secretory protein 4 Svs4 24802 NM_012662 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 1367553_x_at NM_033234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_033234.1 /DB_XREF=gi:17985948 /GEN=Hbb /FEA=FLmRNA /CNT=369 /TID=Rn.36966.1 /TIER=FL+Stack /STK=329 /UG=Rn.36966 /LL=24440 /DEF=Rattus norvegicus Hemoglobin, beta (Hbb), mRNA. /PROD=hemoglobin, beta /FL=gb:M17084.1 gb:NM_033234.1 NM_033234 hemoglobin, beta Hbb 24440 NM_033234 0006749 // glutathione metabolic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0015671 // oxygen transport // inferred from direct assay /// 0015671 // oxygen transport // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from direct assay 0005833 // hemoglobin complex // inferred from direct assay /// 0005833 // hemoglobin complex // inferred from electronic annotation 0005344 // oxygen transporter activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019825 // oxygen binding // inferred from direct assay /// 0019825 // oxygen binding // inferred from electronic annotation /// 0019825 // oxygen binding // not recorded /// 0020037 // heme binding // inferred from electronic annotation /// 0030492 // hemoglobin binding // not recorded /// 0031721 // hemoglobin alpha binding // inferred from direct assay /// 0031722 // hemoglobin beta binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1367554_at NM_080770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080770.1 /DB_XREF=gi:18158438 /GEN=Psbp1 /FEA=FLmRNA /CNT=292 /TID=Rn.9763.1 /TIER=FL+Stack /STK=284 /UG=Rn.9763 /DEF=Rattus norvegicus Prostatic steroid-binding protein 1 (Psbp1), mRNA. /PROD=prostatic steroid-binding protein 1 /FL=gb:NM_080770.1 NM_080770 secretoglobin, family 2A, member 1 /// secretoglobin, family 2A, member 2 Scgb2a1 /// Scgb2a2 25010 /// 361725 NM_080770 /// NM_203333 0051262 // protein tetramerization // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement 0005488 // binding // inferred from electronic annotation /// 0005496 // steroid binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation 1367555_at NM_134326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134326.1 /DB_XREF=gi:19705430 /GEN=Alb /FEA=FLmRNA /CNT=264 /TID=Rn.34353.1 /TIER=FL+Stack /STK=225 /UG=Rn.34353 /LL=24186 /DEF=Rattus norvegicus Albumin (Alb), mRNA. /PROD=albumin /FL=gb:NM_134326.1 NM_134326 albumin Alb 24186 NM_134326 0006810 // transport // inferred from electronic annotation /// 0006950 // response to stress // inferred from direct assay /// 0007584 // response to nutrient // inferred from expression pattern /// 0009267 // cellular response to starvation // not recorded /// 0009267 // cellular response to starvation // inferred from sequence or structural similarity /// 0010033 // response to organic substance // inferred from expression pattern /// 0019836 // hemolysis by symbiont of host erythrocytes // not recorded /// 0019836 // hemolysis by symbiont of host erythrocytes // inferred from sequence or structural similarity /// 0042311 // vasodilation // non-traceable author statement /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0046010 // positive regulation of circadian sleep/wake cycle, non-REM sleep // inferred from direct assay /// 0046689 // response to mercury ion // inferred from expression pattern /// 0051659 // maintenance of mitochondrion location // not recorded /// 0051659 // maintenance of mitochondrion location // inferred from sequence or structural similarity /// 0070541 // response to platinum ion // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005604 // basement membrane // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0031093 // platelet alpha granule lumen // not recorded /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from sequence or structural similarity 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0005504 // fatty acid binding // inferred from direct assay /// 0005504 // fatty acid binding // not recorded /// 0005504 // fatty acid binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008144 // drug binding // inferred from physical interaction /// 0008144 // drug binding // not recorded /// 0008144 // drug binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred from direct assay /// 0008289 // lipid binding // inferred from electronic annotation /// 0015643 // toxin binding // not recorded /// 0015643 // toxin binding // inferred from sequence or structural similarity /// 0019825 // oxygen binding // not recorded /// 0019825 // oxygen binding // inferred from sequence or structural similarity /// 0030170 // pyridoxal phosphate binding // not recorded /// 0030170 // pyridoxal phosphate binding // inferred from sequence or structural similarity /// 0043498 // cell surface binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051087 // chaperone binding // not recorded 1367556_s_at NM_134326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134326.1 /DB_XREF=gi:19705430 /GEN=Alb /FEA=FLmRNA /CNT=264 /TID=Rn.34353.1 /TIER=FL+Stack /STK=225 /UG=Rn.34353 /LL=24186 /DEF=Rattus norvegicus Albumin (Alb), mRNA. /PROD=albumin /FL=gb:NM_134326.1 NM_134326 albumin Alb 24186 NM_134326 0006749 // glutathione metabolic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006950 // response to stress // inferred from direct assay /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // traceable author statement /// 0006982 // response to lipid hydroperoxide // inferred from mutant phenotype /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0009267 // cellular response to starvation // not recorded /// 0009267 // cellular response to starvation // inferred from sequence or structural similarity /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0010269 // response to selenium ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019836 // hemolysis by symbiont of host erythrocytes // not recorded /// 0019836 // hemolysis by symbiont of host erythrocytes // inferred from sequence or structural similarity /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0035094 // response to nicotine // inferred from expression pattern /// 0042311 // vasodilation // non-traceable author statement /// 0042744 // hydrogen peroxide catabolic process // inferred from direct assay /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0046010 // positive regulation of circadian sleep/wake cycle, non-REM sleep // inferred from direct assay /// 0046689 // response to mercury ion // inferred from expression pattern /// 0051593 // response to folic acid // inferred from expression pattern /// 0051659 // maintenance of mitochondrion location // not recorded /// 0051659 // maintenance of mitochondrion location // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0070541 // response to platinum ion // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005604 // basement membrane // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // traceable author statement /// 0031093 // platelet alpha granule lumen // not recorded /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from sequence or structural similarity 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0004601 // peroxidase activity // inferred from electronic annotation /// 0004602 // glutathione peroxidase activity // inferred from direct assay /// 0004602 // glutathione peroxidase activity // inferred from electronic annotation /// 0005504 // fatty acid binding // inferred from direct assay /// 0005504 // fatty acid binding // not recorded /// 0005504 // fatty acid binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008144 // drug binding // inferred from physical interaction /// 0008144 // drug binding // not recorded /// 0008144 // drug binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred from direct assay /// 0008289 // lipid binding // inferred from electronic annotation /// 0008430 // selenium binding // inferred from mutant phenotype /// 0008430 // selenium binding // traceable author statement /// 0015643 // toxin binding // not recorded /// 0015643 // toxin binding // inferred from sequence or structural similarity /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0019825 // oxygen binding // not recorded /// 0019825 // oxygen binding // inferred from sequence or structural similarity /// 0030170 // pyridoxal phosphate binding // not recorded /// 0030170 // pyridoxal phosphate binding // inferred from sequence or structural similarity /// 0043295 // glutathione binding // inferred from direct assay /// 0043498 // cell surface binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047066 // phospholipid-hydroperoxide glutathione peroxidase activity // inferred from mutant phenotype /// 0051087 // chaperone binding // not recorded 1367557_s_at NM_017008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017008.1 /DB_XREF=gi:8393417 /GEN=Gapd /FEA=FLmRNA /CNT=230 /TID=Rn.54911.1 /TIER=FL+Stack /STK=188 /UG=Rn.54911 /LL=24383 /DEF=Rattus norvegicus Glyceraldehyde-3-phosphate dehydrogenase (Gapd), mRNA. /PROD=glyceraldehyde-3-phosphate dehydrogenase /FL=gb:NM_017008.1 gb:AF106860.2 gb:M17701.1 gb:AB017801.1 NM_017008 glyceraldehyde-3-phosphate dehydrogenase Gapdh 24383 NM_017008 0005975 // carbohydrate metabolic process // inferred from direct assay /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006094 // gluconeogenesis // inferred from direct assay /// 0006096 // glycolysis // inferred from direct assay /// 0006096 // glycolysis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from mutant phenotype /// 0007275 // multicellular organismal development // not recorded /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // inferred from direct assay /// 0004365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // inferred from electronic annotation /// 0004365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008943 // glyceraldehyde-3-phosphate dehydrogenase activity // inferred from direct assay /// 0008943 // glyceraldehyde-3-phosphate dehydrogenase activity // inferred from electronic annotation /// 0008943 // glyceraldehyde-3-phosphate dehydrogenase activity // non-traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation 1367558_x_at NM_012718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012718.1 /DB_XREF=gi:7549741 /GEN=Andpro /FEA=FLmRNA /CNT=191 /TID=Rn.9977.1 /TIER=FL+Stack /STK=185 /UG=Rn.9977 /LL=25030 /DEF=Rattus norvegicus Androgen regulated 20 kDa protein (Andpro), mRNA. /PROD=androgen regulated 20 kDa protein /FL=gb:NM_012718.1 gb:M58167.1 gb:M27901.1 NM_012718 androgen regulated 20 kDa protein Andpro 25030 NM_012718 0030521 // androgen receptor signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1367559_at L01122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L01122.1 /DB_XREF=gi:204122 /FEA=FLmRNA /CNT=223 /TID=Rn.1905.1 /TIER=FL+Stack /STK=178 /UG=Rn.1905 /LL=29292 /UG_GENE=Ftl1 /DEF=Rattus norvegicus (clone J13) ferritin light chain subunit mRNA, complete cds. /PROD=ferritin light chain /FL=gb:L01122.1 gb:NM_022500.1 L01122 ferritin, light polypeptide Ftl 29292 NM_022500 0006826 // iron ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0016044 // cellular membrane organization // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005829 // cytosol // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008199 // ferric iron binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046914 // transition metal ion binding // inferred from electronic annotation 1367560_at NM_022402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022402.1 /DB_XREF=gi:11693175 /GEN=Arbp /FEA=FLmRNA /CNT=214 /TID=Rn.1079.1 /TIER=FL+Stack /STK=142 /UG=Rn.1079 /LL=64205 /DEF=Rattus norvegicus acidic ribosomal protein P0 (Arbp), mRNA. /PROD=acidic ribosomal protein P0 /FL=gb:NM_022402.1 NM_022402 ribosomal protein, large, P0 Rplp0 64205 NM_022402 0006414 // translational elongation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367561_at NM_022514 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022514.1 /DB_XREF=gi:11968093 /GEN=Rpl27 /FEA=FLmRNA /CNT=157 /TID=Rn.1254.1 /TIER=FL+Stack /STK=135 /UG=Rn.1254 /LL=64306 /DEF=Rattus norvegicus ribosomal protein L27 (Rpl27), mRNA. /PROD=ribosomal protein L27 /FL=gb:NM_022514.1 NM_022514 ribosomal protein L27 Rpl27 64306 NM_022514 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1367562_at NM_012656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012656.1 /DB_XREF=gi:6981573 /GEN=Sparc /FEA=FLmRNA /CNT=304 /TID=Rn.31991.1 /TIER=FL+Stack /STK=123 /UG=Rn.31991 /LL=24791 /DEF=Rattus norvegicus Secreted acidic cystein-rich glycoprotein (osteonectin) (Sparc), mRNA. /PROD=secreted acidic cystein-rich glycoprotein(osteonectin) /FL=gb:D28875.1 gb:NM_012656.1 NM_012656 secreted protein, acidic, cysteine-rich (osteonectin) Sparc 24791 NM_012656 0001503 // ossification // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0007507 // heart development // inferred from expression pattern /// 0009629 // response to gravity // inferred from expression pattern /// 0010288 // response to lead ion // inferred from expression pattern /// 0030324 // lung development // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033591 // response to L-ascorbic acid // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042060 // wound healing // inferred from expression pattern /// 0042127 // regulation of cell proliferation // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0048839 // inner ear development // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from expression pattern /// 0071363 // cellular response to growth factor stimulus // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0031012 // extracellular matrix // not recorded /// 0031093 // platelet alpha granule lumen // not recorded /// 0031988 // membrane-bounded vesicle // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0050840 // extracellular matrix binding // not recorded 1367563_at D28875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D28875.1 /DB_XREF=gi:600380 /FEA=FLmRNA /CNT=304 /TID=Rn.31991.1 /TIER=FL+Stack /STK=109 /UG=Rn.31991 /LL=24791 /UG_GENE=Sparc /DEF=Rat mRNA for osteonectin, complete cds. /PROD=osteonectin /FL=gb:D28875.1 gb:NM_012656.1 D28875 secreted protein, acidic, cysteine-rich (osteonectin) Sparc 24791 NM_012656 0001503 // ossification // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0007507 // heart development // inferred from expression pattern /// 0009629 // response to gravity // inferred from expression pattern /// 0010288 // response to lead ion // inferred from expression pattern /// 0030324 // lung development // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033591 // response to L-ascorbic acid // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042060 // wound healing // inferred from expression pattern /// 0042127 // regulation of cell proliferation // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0048839 // inner ear development // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from expression pattern /// 0071363 // cellular response to growth factor stimulus // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0031012 // extracellular matrix // not recorded /// 0031093 // platelet alpha granule lumen // not recorded /// 0031988 // membrane-bounded vesicle // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0050840 // extracellular matrix binding // not recorded 1367564_at NM_012612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012612.1 /DB_XREF=gi:6981277 /GEN=Nppa /FEA=FLmRNA /CNT=132 /TID=Rn.2004.1 /TIER=FL+Stack /STK=122 /UG=Rn.2004 /LL=24602 /DEF=Rattus norvegicus Natriuretic peptide precursor A, (pronatriodilatin, also Anf, Pnd) (Nppa), mRNA. /PROD=natriuretic peptide precursor A,(pronatriodilatin, also Anf, Pnd) /FL=gb:M27498.1 gb:NM_012612.1 NM_012612 natriuretic peptide precursor A Nppa 24602 NM_012612 0006182 // cGMP biosynthetic process // inferred from direct assay /// 0006182 // cGMP biosynthetic process // not recorded /// 0006182 // cGMP biosynthetic process // inferred from electronic annotation /// 0007168 // receptor guanylyl cyclase signaling pathway // not recorded /// 0007168 // receptor guanylyl cyclase signaling pathway // inferred from sequence or structural similarity /// 0007168 // receptor guanylyl cyclase signaling pathway // inferred from electronic annotation /// 0008217 // regulation of blood pressure // not recorded /// 0008217 // regulation of blood pressure // traceable author statement /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0042312 // regulation of vasodilation // traceable author statement /// 0050878 // regulation of body fluid levels // traceable author statement /// 0050880 // regulation of blood vessel size // inferred from electronic annotation /// 0050891 // multicellular organismal water homeostasis // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0042629 // mast cell granule // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005102 // receptor binding // inferred from direct assay /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005179 // hormone activity // inferred from direct assay /// 0005179 // hormone activity // traceable author statement /// 0005179 // hormone activity // inferred from electronic annotation /// 0051428 // peptide hormone receptor binding // inferred from direct assay 1367565_a_at NM_012848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012848.1 /DB_XREF=gi:6978858 /GEN=Fth1 /FEA=FLmRNA /CNT=202 /TID=Rn.54447.1 /TIER=FL+Stack /STK=120 /UG=Rn.54447 /LL=25319 /DEF=Rattus norvegicus Ferritin subunit H (Fth1), mRNA. /PROD=ferritin subunit H /FL=gb:NM_012848.1 gb:U58829.1 NM_012848 ferritin, heavy polypeptide 1 Fth1 25319 NM_012848 0006826 // iron ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0006955 // immune response // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0016044 // cellular membrane organization // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060547 // negative regulation of necrotic cell death // inferred from mutant phenotype 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded 0004322 // ferroxidase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008199 // ferric iron binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046914 // transition metal ion binding // inferred from electronic annotation 1367566_at NM_013051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013051.1 /DB_XREF=gi:6981693 /GEN=Ugb /FEA=FLmRNA /CNT=136 /TID=Rn.2206.1 /TIER=FL+Stack /STK=109 /UG=Rn.2206 /LL=25575 /DEF=Rattus norvegicus Uteroglobin (Clara cell secretory protein) (Ugb), mRNA. /PROD=uteroglobin (Clara cell secretory protein) /FL=gb:J05536.1 gb:NM_013051.1 NM_013051 secretoglobin, family 1A, member 1 (uteroglobin) Scgb1a1 25575 NM_013051 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0032689 // negative regulation of interferon-gamma production // inferred from electronic annotation /// 0032689 // negative regulation of interferon-gamma production // not recorded /// 0032696 // negative regulation of interleukin-13 production // inferred from electronic annotation /// 0032696 // negative regulation of interleukin-13 production // not recorded /// 0032713 // negative regulation of interleukin-4 production // inferred from electronic annotation /// 0032713 // negative regulation of interleukin-4 production // not recorded /// 0032714 // negative regulation of interleukin-5 production // inferred from electronic annotation /// 0032714 // negative regulation of interleukin-5 production // not recorded /// 0042130 // negative regulation of T cell proliferation // inferred from electronic annotation /// 0042130 // negative regulation of T cell proliferation // not recorded /// 0043488 // regulation of mRNA stability // inferred from electronic annotation /// 0043488 // regulation of mRNA stability // not recorded /// 0050727 // regulation of inflammatory response // inferred from electronic annotation /// 0050727 // regulation of inflammatory response // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0044424 // intracellular part // not recorded /// 0044424 // intracellular part // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0019834 // phospholipase A2 inhibitor activity // inferred from electronic annotation 1367567_at NM_053971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053971.1 /DB_XREF=gi:16758863 /GEN=Rpl6 /FEA=FLmRNA /CNT=117 /TID=Rn.2660.1 /TIER=FL+Stack /STK=95 /UG=Rn.2660 /LL=117042 /DEF=Rattus norvegicus ribosomal protein L6 (Rpl6), mRNA. /PROD=ribosomal protein L6 /FL=gb:NM_053971.1 NM_053971 ribosomal protein L6 Rpl6 117042 NM_053971 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1367568_a_at NM_012862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012862.1 /DB_XREF=gi:6981203 /GEN=Mgp /FEA=FLmRNA /CNT=101 /TID=Rn.2379.1 /TIER=FL+Stack /STK=93 /UG=Rn.2379 /LL=25333 /DEF=Rattus norvegicus Matrix Gla protein (Mgp), mRNA. /PROD=matrix Gla protein /FL=gb:NM_012862.1 gb:J03026.1 NM_012862 matrix Gla protein Mgp 25333 NM_012862 0001503 // ossification // inferred from expression pattern /// 0001503 // ossification // inferred from electronic annotation /// 0006461 // protein complex assembly // inferred from physical interaction /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030324 // lung development // inferred from mutant phenotype /// 0030500 // regulation of bone mineralization // inferred from electronic annotation /// 0042221 // response to chemical stimulus // inferred from expression pattern /// 0048754 // branching morphogenesis of a tube // inferred from mutant phenotype /// 0051216 // cartilage development // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // not recorded /// 0043234 // protein complex // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from physical interaction 1367569_at NM_017138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017138.1 /DB_XREF=gi:8393692 /GEN=Lamr1 /FEA=FLmRNA /CNT=120 /TID=Rn.999.1 /TIER=FL+Stack /STK=88 /UG=Rn.999 /LL=29236 /DEF=Rattus norvegicus laminin receptor 1 (Lamr1), mRNA. /PROD=laminin receptor 1 /FL=gb:D25224.1 gb:NM_017138.1 NM_017138 ribosomal protein SA Rpsa 29236 NM_017138 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0016337 // cell-cell adhesion // inferred from direct assay /// 0030855 // epithelial cell differentiation // inferred from expression pattern 0005604 // basement membrane // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005055 // laminin receptor activity // traceable author statement /// 0005198 // structural molecule activity // inferred by curator /// 0043022 // ribosome binding // not recorded /// 0043236 // laminin binding // not recorded 1367570_at NM_031549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031549.1 /DB_XREF=gi:13928743 /GEN=Tagln /FEA=FLmRNA /CNT=117 /TID=Rn.34397.1 /TIER=FL+Stack /STK=82 /UG=Rn.34397 /LL=25123 /DEF=Rattus norvegicus Transgelin (Smooth muscle 22 protein) (Tagln), mRNA. /PROD=see also D8Mcw1 /FL=gb:NM_031549.1 gb:M83107.1 NM_031549 transgelin Tagln 25123 NM_031549 0007010 // cytoskeleton organization // not recorded /// 0007517 // muscle organ development // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030674 // protein binding, bridging // traceable author statement /// 0051015 // actin filament binding // traceable author statement 1367571_a_at NM_031511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031511.1 /DB_XREF=gi:13937374 /GEN=Igf2 /FEA=FLmRNA /CNT=106 /TID=Rn.964.1 /TIER=FL+Stack /STK=82 /UG=Rn.964 /LL=24483 /DEF=Rattus norvegicus Insulin-like growth factor II (somatomedin A) (Igf2), mRNA. /PROD=insulin-like growth factor II (somatomedin A) /FL=gb:NM_031511.1 NM_031511 insulin-like growth factor 2 Igf2 24483 NM_001190162 /// NM_001190163 /// NM_031511 0001503 // ossification // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0009314 // response to radiation // inferred from expression pattern /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0031017 // exocrine pancreas development // inferred from electronic annotation /// 0031017 // exocrine pancreas development // not recorded /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0035094 // response to nicotine // inferred from expression pattern /// 0042493 // response to drug // inferred from direct assay /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0045840 // positive regulation of mitosis // inferred from electronic annotation /// 0045840 // positive regulation of mitosis // not recorded /// 0046628 // positive regulation of insulin receptor signaling pathway // inferred from electronic annotation /// 0046628 // positive regulation of insulin receptor signaling pathway // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling cascade // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation 0005158 // insulin receptor binding // inferred from electronic annotation /// 0005158 // insulin receptor binding // not recorded /// 0005159 // insulin-like growth factor receptor binding // inferred from electronic annotation /// 0005159 // insulin-like growth factor receptor binding // not recorded /// 0005179 // hormone activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // not recorded /// 0008083 // growth factor activity // traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation 1367572_at NM_012606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012606.1 /DB_XREF=gi:6981239 /GEN=Myl3 /FEA=FLmRNA /CNT=83 /TID=Rn.1955.1 /TIER=FL+Stack /STK=76 /UG=Rn.1955 /LL=24585 /DEF=Rattus norvegicus Myosin light chain 3, alkali, cardiac ventricles (Myl3), mRNA. /PROD=myosin light chain 3, alkali, cardiacventricles /FL=gb:NM_012606.1 NM_012606 myosin, light chain 3, alkali; ventricular, skeletal, slow Myl3 24585 NM_012606 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002026 // regulation of the force of heart contraction // not recorded /// 0006936 // muscle contraction // traceable author statement /// 0006942 // regulation of striated muscle contraction // inferred from electronic annotation /// 0006942 // regulation of striated muscle contraction // not recorded /// 0007519 // skeletal muscle tissue development // inferred from expression pattern /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0060048 // cardiac muscle contraction // inferred from direct assay /// 0060048 // cardiac muscle contraction // not recorded /// 0060048 // cardiac muscle contraction // inferred from electronic annotation 0016459 // myosin complex // inferred from direct assay /// 0016459 // myosin complex // inferred from electronic annotation /// 0031672 // A band // inferred from electronic annotation /// 0031672 // A band // not recorded /// 0031674 // I band // inferred from electronic annotation /// 0031674 // I band // not recorded 0003774 // motor activity // inferred from direct assay /// 0003774 // motor activity // inferred from electronic annotation /// 0003785 // actin monomer binding // inferred from electronic annotation /// 0003785 // actin monomer binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation 1367573_at NM_017160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017160.1 /DB_XREF=gi:8394223 /GEN=Rps6 /FEA=FLmRNA /CNT=99 /TID=Rn.34341.1 /TIER=FL+Stack /STK=75 /UG=Rn.34341 /LL=29304 /DEF=Rattus norvegicus ribosomal protein S6 (Rps6), mRNA. /PROD=ribosomal protein S6 /FL=gb:M29358.1 gb:NM_017160.1 NM_017160 ribosomal protein S6 Rps6 29304 NM_017160 0000028 // ribosomal small subunit assembly // inferred from mutant phenotype /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0001890 // placenta development // not recorded /// 0002309 // T cell proliferation involved in immune response // not recorded /// 0006364 // rRNA processing // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0006924 // activation-induced cell death of T cells // not recorded /// 0007067 // mitosis // not recorded /// 0007369 // gastrulation // not recorded /// 0022605 // oogenesis stage // not recorded /// 0031575 // mitotic cell cycle G1/S transition checkpoint // not recorded /// 0031929 // TOR signaling cascade // not recorded /// 0033077 // T cell differentiation in thymus // not recorded /// 0042274 // ribosomal small subunit biogenesis // not recorded /// 0042593 // glucose homeostasis // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0048821 // erythrocyte development // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // not recorded /// 0005840 // ribosome // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0005844 // polysome // not recorded /// 0015935 // small ribosomal subunit // not recorded /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0003735 // structural constituent of ribosome // inferred from mutant phenotype /// 0003735 // structural constituent of ribosome // traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367574_at NM_031140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031140.1 /DB_XREF=gi:14389298 /GEN=Vim /FEA=FLmRNA /CNT=100 /TID=Rn.2710.1 /TIER=FL+Stack /STK=67 /UG=Rn.2710 /LL=81818 /DEF=Rattus norvegicus vimentin (Vim), mRNA. /PROD=vimentin /FL=gb:NM_031140.1 NM_031140 vimentin Vim 81818 NM_031140 0045103 // intermediate filament-based process // inferred from electronic annotation /// 0045103 // intermediate filament-based process // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // not recorded /// 0005882 // intermediate filament // not recorded /// 0005882 // intermediate filament // inferred from sequence or structural similarity /// 0005882 // intermediate filament // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0031252 // cell leading edge // inferred from electronic annotation /// 0031252 // cell leading edge // not recorded /// 0045098 // type III intermediate filament // traceable author statement /// 0045111 // intermediate filament cytoskeleton // not recorded /// 0045111 // intermediate filament cytoskeleton // inferred from electronic annotation 0005198 // structural molecule activity // not recorded /// 0005198 // structural molecule activity // traceable author statement /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // not recorded /// 0005200 // structural constituent of cytoskeleton // inferred from sequence or structural similarity /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction 1367575_at NM_012554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012554.1 /DB_XREF=gi:6978808 /GEN=Eno1 /FEA=FLmRNA /CNT=91 /TID=Rn.4236.1 /TIER=FL+Stack /STK=64 /UG=Rn.4236 /LL=24333 /DEF=Rattus norvegicus Enolase 1, alpha (Eno1), mRNA. /PROD=enolase 1, alpha /FL=gb:NM_012554.1 NM_012554 enolase 1, (alpha) Eno1 24333 NM_001109908 /// NM_012554 0001701 // in utero embryonic development // not recorded /// 0006096 // glycolysis // traceable author statement /// 0006096 // glycolysis // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0009615 // response to virus // not recorded /// 0030308 // negative regulation of cell growth // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0000015 // phosphopyruvate hydratase complex // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004634 // phosphopyruvate hydratase activity // inferred from direct assay /// 0004634 // phosphopyruvate hydratase activity // not recorded /// 0004634 // phosphopyruvate hydratase activity // traceable author statement /// 0004634 // phosphopyruvate hydratase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016829 // lyase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay 1367576_at S41066 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:S41066.1 /DB_XREF=gi:252502 /FEA=FLmRNA /CNT=74 /TID=Rn.11323.1 /TIER=FL+Stack /STK=61 /UG=Rn.11323 /LL=24404 /UG_GENE=Gpx1 /DEF=Rattus norvegicus selenium-dependent glutathione peroxidase mRNA, complete cds. /PROD=selenium-dependent glutathione peroxidase /FL=gb:NM_030826.1 gb:S41066.1 gb:M21210.1 S41066 glutathione peroxidase 1 Gpx1 24404 NM_030826 0000302 // response to reactive oxygen species // not recorded /// 0001659 // temperature homeostasis // not recorded /// 0001836 // release of cytochrome c from mitochondria // not recorded /// 0001885 // endothelial cell development // not recorded /// 0002862 // negative regulation of inflammatory response to antigenic stimulus // not recorded /// 0006629 // lipid metabolic process // not recorded /// 0006641 // triglyceride metabolic process // not recorded /// 0006749 // glutathione metabolic process // inferred from direct assay /// 0006749 // glutathione metabolic process // not recorded /// 0006915 // apoptosis // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0006979 // response to oxidative stress // not recorded /// 0006979 // response to oxidative stress // traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006982 // response to lipid hydroperoxide // inferred from mutant phenotype /// 0007568 // aging // inferred from expression pattern /// 0007605 // sensory perception of sound // not recorded /// 0008152 // metabolic process // not recorded /// 0008283 // cell proliferation // not recorded /// 0008631 // induction of apoptosis by oxidative stress // not recorded /// 0009410 // response to xenobiotic stimulus // not recorded /// 0009609 // response to symbiotic bacterium // not recorded /// 0009611 // response to wounding // not recorded /// 0009636 // response to toxin // not recorded /// 0009650 // UV protection // not recorded /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010269 // response to selenium ion // inferred from expression pattern /// 0010269 // response to selenium ion // not recorded /// 0010332 // response to gamma radiation // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014902 // myotube differentiation // not recorded /// 0018158 // protein oxidation // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0033194 // response to hydroperoxide // not recorded /// 0033599 // regulation of mammary gland epithelial cell proliferation // not recorded /// 0035094 // response to nicotine // inferred from expression pattern /// 0040029 // regulation of gene expression, epigenetic // not recorded /// 0042311 // vasodilation // not recorded /// 0042542 // response to hydrogen peroxide // not recorded /// 0042744 // hydrogen peroxide catabolic process // inferred from direct assay /// 0042744 // hydrogen peroxide catabolic process // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043154 // negative regulation of caspase activity // not recorded /// 0043403 // skeletal muscle tissue regeneration // not recorded /// 0043523 // regulation of neuron apoptosis // not recorded /// 0043534 // blood vessel endothelial cell migration // not recorded /// 0045444 // fat cell differentiation // not recorded /// 0045454 // cell redox homeostasis // not recorded /// 0048741 // skeletal muscle fiber development // not recorded /// 0051450 // myoblast proliferation // not recorded /// 0051593 // response to folic acid // inferred from expression pattern /// 0051702 // interaction with symbiont // not recorded /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060047 // heart contraction // not recorded /// 0060055 // angiogenesis involved in wound healing // not recorded /// 0061136 // regulation of proteasomal protein catabolic process // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // traceable author statement 0004601 // peroxidase activity // inferred from electronic annotation /// 0004602 // glutathione peroxidase activity // inferred from direct assay /// 0004602 // glutathione peroxidase activity // not recorded /// 0004602 // glutathione peroxidase activity // inferred from electronic annotation /// 0004866 // endopeptidase inhibitor activity // not recorded /// 0008430 // selenium binding // inferred from mutant phenotype /// 0008430 // selenium binding // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded /// 0043295 // glutathione binding // inferred from direct assay /// 0047066 // phospholipid-hydroperoxide glutathione peroxidase activity // inferred from mutant phenotype 1367577_at NM_031970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031970.1 /DB_XREF=gi:14010864 /GEN=Hspb1 /FEA=FLmRNA /CNT=62 /TID=Rn.3841.1 /TIER=FL+Stack /STK=58 /UG=Rn.3841 /LL=24471 /DEF=Rattus norvegicus heat shock 27kD protein 1 (Hspb1), mRNA. /PROD=heat shock 27kD protein 1 /FL=gb:M86389.1 gb:NM_031970.1 NM_031970 heat shock protein 1 Hspb1 24471 NM_031970 0006916 // anti-apoptosis // traceable author statement /// 0006950 // response to stress // inferred from electronic annotation /// 0009408 // response to heat // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0009615 // response to virus // not recorded 0000502 // proteasome complex // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005626 // insoluble fraction // inferred from electronic annotation /// 0005626 // insoluble fraction // not recorded /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0030018 // Z disc // inferred from electronic annotation /// 0030018 // Z disc // not recorded /// 0043292 // contractile fiber // inferred from electronic annotation /// 0043292 // contractile fiber // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0043130 // ubiquitin binding // inferred from direct assay 1367578_at NM_017169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017169.1 /DB_XREF=gi:8394431 /GEN=Prdx2 /FEA=FLmRNA /CNT=71 /TID=Rn.2511.1 /TIER=FL+Stack /STK=55 /UG=Rn.2511 /LL=29338 /DEF=Rattus norvegicus peroxiredoxin 2 (Prdx2), mRNA. /PROD=thioredoxin peroxidase 1 /FL=gb:NM_017169.1 gb:U06099.1 NM_017169 peroxiredoxin 2 Prdx2 29338 NM_017169 0000187 // activation of MAPK activity // not recorded /// 0002536 // respiratory burst involved in inflammatory response // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0006979 // response to oxidative stress // inferred from mutant phenotype /// 0006979 // response to oxidative stress // not recorded /// 0010310 // regulation of hydrogen peroxide metabolic process // not recorded /// 0010671 // negative regulation of oxygen and reactive oxygen species metabolic process // not recorded /// 0031665 // negative regulation of lipopolysaccharide-mediated signaling pathway // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0032496 // response to lipopolysaccharide // not recorded /// 0042098 // T cell proliferation // not recorded /// 0042743 // hydrogen peroxide metabolic process // not recorded /// 0042744 // hydrogen peroxide catabolic process // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from mutant phenotype /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0045581 // negative regulation of T cell differentiation // not recorded /// 0048538 // thymus development // not recorded /// 0048872 // homeostasis of number of cells // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay 0004601 // peroxidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008379 // thioredoxin peroxidase activity // not recorded /// 0016209 // antioxidant activity // not recorded /// 0016209 // antioxidant activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0051920 // peroxiredoxin activity // inferred from electronic annotation 1367579_a_at BI285434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285434 /DB_XREF=gi:14939068 /DB_XREF=UI-R-DD0-caa-a-11-0-UI.s1 /CLONE=UI-R-DD0-caa-a-11-0-UI /FEA=EST /CNT=12 /TID=Rn.54749.3 /TIER=Stack /STK=11 /UG=Rn.54749 /LL=64158 /UG_GENE=Tuba1 /UG_TITLE=alpha-tubulin BI285434 tubulin, alpha 1A /// tubulin, alpha 1B /// tubulin, alpha 1C Tuba1a /// Tuba1b /// Tuba1c 300218 /// 500929 /// 64158 NM_001011995 /// NM_001044270 /// NM_022298 0007017 // microtubule-based process // traceable author statement /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation 0005829 // cytosol // not recorded /// 0005874 // microtubule // traceable author statement /// 0005874 // microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // not recorded /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // traceable author statement 1367580_at NM_031065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031065.1 /DB_XREF=gi:13592008 /GEN=Rpl10a /FEA=FLmRNA /CNT=70 /TID=Rn.2262.1 /TIER=FL+Stack /STK=54 /UG=Rn.2262 /LL=81729 /DEF=Rattus norvegicus ribosomal protein L10a (Rpl10a), mRNA. /PROD=ribosomal protein L10a /FL=gb:NM_031065.1 NM_031065 ribosomal protein L10A Rpl10a 81729 NM_031065 0006396 // RNA processing // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation 1367581_a_at AB001382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB001382.1 /DB_XREF=gi:1871123 /FEA=FLmRNA /CNT=1 /TID=Rn.8871.3 /TIER=FL /STK=1 /UG=Rn.8871 /LL=25353 /UG_GENE=Spp1 /DEF=Rattus norvegicus mRNA for osteopontin, complete cds. /PROD=osteopontin /FL=gb:AB001382.1 AB001382 secreted phosphoprotein 1 Spp1 25353 NM_012881 0001503 // ossification // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from mutant phenotype /// 0006954 // inflammatory response // inferred from expression pattern /// 0007155 // cell adhesion // inferred from direct assay /// 0007155 // cell adhesion // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from direct assay /// 0010811 // positive regulation of cell-substrate adhesion // not recorded /// 0030154 // cell differentiation // inferred from expression pattern /// 0031214 // biomineral tissue development // inferred from electronic annotation /// 0033280 // response to vitamin D // inferred from electronic annotation /// 0033280 // response to vitamin D // not recorded /// 0045780 // positive regulation of bone resorption // inferred from direct assay /// 0048545 // response to steroid hormone stimulus // inferred from direct assay /// 0048685 // negative regulation of collateral sprouting of intact axon in response to injury // inferred from expression pattern 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0031988 // membrane-bounded vesicle // inferred from direct assay /// 0042995 // cell projection // inferred from direct assay /// 0045177 // apical part of cell // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation /// 0050840 // extracellular matrix binding // not recorded 1367582_at NM_017150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017150.1 /DB_XREF=gi:8394208 /GEN=Rpl29 /FEA=FLmRNA /CNT=72 /TID=Rn.3973.1 /TIER=FL+Stack /STK=53 /UG=Rn.3973 /LL=29283 /DEF=Rattus norvegicus ribosomal protein L29 (Rpl29), mRNA. /PROD=ribosomal protein L29 /FL=gb:NM_017150.1 NM_017150 ribosomal protein L29 Rpl29 29283 NM_017150 0006412 // translation // inferred from electronic annotation /// 0006412 // translation // not recorded /// 0006414 // translational elongation // not recorded /// 0008283 // cell proliferation // not recorded /// 0031589 // cell-substrate adhesion // not recorded /// 0035264 // multicellular organism growth // not recorded 0000300 // peripheral to membrane of membrane fraction // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0022626 // cytosolic ribosome // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0042788 // polysomal ribosome // not recorded 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008201 // heparin binding // not recorded 1367583_at NM_053867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053867.1 /DB_XREF=gi:16758733 /GEN=Tpt1 /FEA=FLmRNA /CNT=86 /TID=Rn.36610.1 /TIER=FL+Stack /STK=52 /UG=Rn.36610 /LL=116646 /DEF=Rattus norvegicus tumor protein, translationally-controlled 1 (Tpt1), mRNA. /PROD=tumor protein, translationally-controlled 1 /FL=gb:U20525.1 gb:NM_053867.1 NM_053867 tumor protein, translationally-controlled 1 Tpt1 116646 NM_053867 0006916 // anti-apoptosis // not recorded /// 0007283 // spermatogenesis // inferred from expression pattern /// 0008283 // cell proliferation // traceable author statement /// 0009615 // response to virus // not recorded 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005771 // multivesicular body // not recorded /// 0045298 // tubulin complex // not recorded 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // not recorded 1367584_at NM_019905 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019905.1 /DB_XREF=gi:9845233 /GEN=Anxa2 /FEA=FLmRNA /CNT=80 /TID=Rn.28.1 /TIER=FL+Stack /STK=52 /UG=Rn.28 /LL=56611 /DEF=Rattus norvegicus calpactin I heavy chain (Anxa2), mRNA. /PROD=calpactin I heavy chain /FL=gb:NM_019905.1 gb:L13039.1 NM_019905 annexin A2 Anxa2 56611 NM_019905 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0007589 // body fluid secretion // inferred from mutant phenotype /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0030199 // collagen fibril organization // not recorded /// 0031340 // positive regulation of vesicle fusion // inferred from electronic annotation /// 0031340 // positive regulation of vesicle fusion // not recorded /// 0042730 // fibrinolysis // not recorded /// 0042730 // fibrinolysis // inferred from electronic annotation /// 0051917 // regulation of fibrinolysis // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042383 // sarcolemma // not recorded /// 0042470 // melanosome // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004859 // phospholipase inhibitor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // not recorded /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from direct assay /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from physical interaction /// 0051015 // actin filament binding // traceable author statement 1367585_a_at M28647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M28647.1 /DB_XREF=gi:205631 /GEN=Na,K-ATPase /FEA=FLmRNA /CNT=2 /TID=Rn.2992.2 /TIER=FL /STK=1 /UG=Rn.2992 /LL=24211 /DEF=Rattus norvegicus Na,K-ATPase alpha-1 subunit mRNA, complete cds. /PROD=Na,K-ATPase alpha-1 subunit /FL=gb:M28647.1 M28647 ATPase, Na+/K+ transporting, alpha 1 polypeptide Atp1a1 24211 NM_012504 0002026 // regulation of the force of heart contraction // not recorded /// 0006200 // ATP catabolic process // not recorded /// 0006200 // ATP catabolic process // traceable author statement /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from direct assay /// 0006813 // potassium ion transport // not recorded /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008217 // regulation of blood pressure // not recorded /// 0010107 // potassium ion import // inferred from direct assay /// 0015672 // monovalent inorganic cation transport // inferred from electronic annotation /// 0015988 // energy coupled proton transport, against electrochemical gradient // traceable author statement /// 0016311 // dephosphorylation // not recorded /// 0031947 // negative regulation of glucocorticoid biosynthetic process // not recorded /// 0042493 // response to drug // not recorded /// 0045822 // negative regulation of heart contraction // not recorded /// 0045823 // positive regulation of heart contraction // not recorded /// 0045989 // positive regulation of striated muscle contraction // not recorded /// 0071436 // sodium ion export // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005886 // plasma membrane // not recorded /// 0005890 // sodium:potassium-exchanging ATPase complex // inferred from direct assay /// 0005890 // sodium:potassium-exchanging ATPase complex // non-traceable author statement /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0042383 // sarcolemma // not recorded /// 0042470 // melanosome // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003869 // 4-nitrophenylphosphatase activity // not recorded /// 0005391 // sodium:potassium-exchanging ATPase activity // inferred from direct assay /// 0005391 // sodium:potassium-exchanging ATPase activity // not recorded /// 0005391 // sodium:potassium-exchanging ATPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0015077 // monovalent inorganic cation transmembrane transporter activity // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030955 // potassium ion binding // inferred from direct assay /// 0031402 // sodium ion binding // inferred from direct assay /// 0043531 // ADP binding // inferred from direct assay /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1367586_at NM_017025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017025.1 /DB_XREF=gi:8393705 /GEN=Ldha /FEA=FLmRNA /CNT=92 /TID=Rn.3687.1 /TIER=FL+Stack /STK=50 /UG=Rn.3687 /LL=24533 /DEF=Rattus norvegicus Lactate dehydrogenase A (Ldha), mRNA. /PROD=lactate dehydrogenase A /FL=gb:NM_017025.1 NM_017025 lactate dehydrogenase A Ldha 24533 NM_017025 0001666 // response to hypoxia // inferred from expression pattern /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006089 // lactate metabolic process // inferred from direct assay /// 0006096 // glycolysis // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019674 // NAD metabolic process // inferred from direct assay /// 0031668 // cellular response to extracellular stimulus // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from direct assay /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0044262 // cellular carbohydrate metabolic process // inferred from electronic annotation /// 0048569 // post-embryonic organ development // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded /// 0019861 // flagellum // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004457 // lactate dehydrogenase activity // inferred from direct assay /// 0004459 // L-lactate dehydrogenase activity // inferred from direct assay /// 0004459 // L-lactate dehydrogenase activity // not recorded /// 0004459 // L-lactate dehydrogenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay /// 0051287 // NAD or NADH binding // inferred from direct assay 1367587_at NM_033233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_033233.1 /DB_XREF=gi:15100176 /GEN=Csh1v /FEA=FLmRNA /CNT=57 /TID=Rn.1259.1 /TIER=FL+Stack /STK=50 /UG=Rn.1259 /LL=24282 /DEF=Rattus norvegicus Chorionic somatomammotropin hormone 1 variant; Placental lactogen-1 (Csh1v), mRNA. /PROD=chorionic somatomammotropin hormone 1 variant;Placental lactogen-1 /FL=gb:U32679.1 gb:NM_033233.1 NM_033233 prolactin family 3, subfamily d, member 4 Prl3d4 24282 NM_033233 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0042976 // activation of Janus kinase activity // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation 0005148 // prolactin receptor binding // inferred from mutant phenotype /// 0005179 // hormone activity // inferred from electronic annotation 1367588_a_at NM_022179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022179.1 /DB_XREF=gi:11559936 /GEN=Hk3 /FEA=FLmRNA /CNT=87 /TID=Rn.54827.1 /TIER=FL+Stack /STK=49 /UG=Rn.54827 /LL=25060 /DEF=Rattus norvegicus Hexokinase 3 (Hk3), mRNA. /PROD=hexokinase 3 /FL=gb:U73859.1 gb:NM_022179.1 NM_022179 ribosomal protein L13A Rpl13a 317646 NM_173340 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // non-traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // non-traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation 1367589_at NM_024398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024398.1 /DB_XREF=gi:13242311 /GEN=Aco2 /FEA=FLmRNA /CNT=70 /TID=Rn.43737.1 /TIER=FL+Stack /STK=49 /UG=Rn.43737 /LL=79250 /DEF=Rattus norvegicus mitochondrial aconitase (nuclear aco2 gene) (Aco2), mRNA. /PROD=mitochondrial aconitase (nuclear aco2 gene) /FL=gb:NM_024398.1 NM_024398 aconitase 2, mitochondrial Aco2 79250 NM_024398 0006099 // tricarboxylic acid cycle // inferred from direct assay /// 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006099 // tricarboxylic acid cycle // not recorded /// 0006101 // citrate metabolic process // inferred from direct assay /// 0006101 // citrate metabolic process // not recorded /// 0006102 // isocitrate metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0005634 // nucleus // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0003994 // aconitate hydratase activity // inferred from direct assay /// 0003994 // aconitate hydratase activity // inferred from electronic annotation /// 0003994 // aconitate hydratase activity // not recorded /// 0005506 // iron ion binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0016829 // lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051538 // 3 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 1367590_at NM_053439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053439.1 /DB_XREF=gi:16758181 /GEN=Ran /FEA=FLmRNA /CNT=67 /TID=Rn.2525.1 /TIER=FL+Stack /STK=49 /UG=Rn.2525 /LL=84509 /DEF=Rattus norvegicus RAN, member RAS oncogene family (Ran), mRNA. /PROD=RAN, member RAS oncogene family /FL=gb:NM_053439.1 gb:AF306457.1 NM_053439 RAN, member RAS oncogene family Ran 84509 NM_053439 0000226 // microtubule cytoskeleton organization // traceable author statement /// 0006606 // protein import into nucleus // not recorded /// 0006606 // protein import into nucleus // traceable author statement /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006611 // protein export from nucleus // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // traceable author statement /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007286 // spermatid development // inferred from expression pattern /// 0015031 // protein transport // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000785 // chromatin // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0042470 // melanosome // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // traceable author statement /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1367591_at NM_022540 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022540.1 /DB_XREF=gi:11968131 /GEN=Prdx3 /FEA=FLmRNA /CNT=58 /TID=Rn.2011.1 /TIER=FL+Stack /STK=48 /UG=Rn.2011 /LL=64371 /DEF=Rattus norvegicus peroxiredoxin 3 (Prdx3), mRNA. /PROD=peroxiredoxin 3 /FL=gb:AF106944.1 gb:NM_022540.1 NM_022540 peroxiredoxin 3 Prdx3 64371 NM_022540 0001893 // maternal placenta development // inferred from electronic annotation /// 0001893 // maternal placenta development // not recorded /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0030099 // myeloid cell differentiation // inferred from electronic annotation /// 0030099 // myeloid cell differentiation // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0033673 // negative regulation of kinase activity // inferred from electronic annotation /// 0033673 // negative regulation of kinase activity // not recorded /// 0034614 // cellular response to reactive oxygen species // inferred from electronic annotation /// 0034614 // cellular response to reactive oxygen species // not recorded /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // not recorded /// 0042744 // hydrogen peroxide catabolic process // inferred from electronic annotation /// 0042744 // hydrogen peroxide catabolic process // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // inferred from mutant phenotype /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051881 // regulation of mitochondrial membrane potential // inferred from electronic annotation /// 0051881 // regulation of mitochondrial membrane potential // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0008385 // IkappaB kinase complex // inferred from electronic annotation /// 0008385 // IkappaB kinase complex // not recorded 0004601 // peroxidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0016209 // antioxidant activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0019900 // kinase binding // not recorded /// 0019900 // kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0043027 // caspase inhibitor activity // inferred from electronic annotation /// 0043027 // caspase inhibitor activity // not recorded /// 0051920 // peroxiredoxin activity // inferred from electronic annotation 1367592_at NM_012676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012676.1 /DB_XREF=gi:6981665 /GEN=Tnnt2 /FEA=FLmRNA /CNT=52 /TID=Rn.9965.1 /TIER=FL+Stack /STK=48 /UG=Rn.9965 /LL=24837 /DEF=Rattus norvegicus Troponin T, cardiac (Tnnt2), mRNA. /PROD=troponin T, cardiac /FL=gb:M26052.1 gb:NM_012676.1 gb:M26051.1 NM_012676 troponin T type 2 (cardiac) Tnnt2 24837 NM_012676 0006936 // muscle contraction // inferred from mutant phenotype /// 0006936 // muscle contraction // not recorded /// 0006936 // muscle contraction // traceable author statement /// 0006937 // regulation of muscle contraction // inferred from direct assay /// 0007507 // heart development // not recorded /// 0008016 // regulation of heart contraction // not recorded /// 0030049 // muscle filament sliding // not recorded /// 0032780 // negative regulation of ATPase activity // not recorded /// 0032781 // positive regulation of ATPase activity // not recorded /// 0032972 // regulation of muscle filament sliding speed // inferred from mutant phenotype /// 0045214 // sarcomere organization // not recorded /// 0051291 // protein heterooligomerization // inferred from physical interaction /// 0051592 // response to calcium ion // not recorded /// 0051764 // actin crosslink formation // inferred from direct assay /// 0055009 // atrial cardiac muscle tissue morphogenesis // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0060048 // cardiac muscle contraction // inferred from direct assay 0005737 // cytoplasm // not recorded /// 0005861 // troponin complex // inferred from direct assay /// 0005861 // troponin complex // not recorded /// 0005865 // striated muscle thin filament // not recorded /// 0030016 // myofibril // inferred from direct assay /// 0030016 // myofibril // not recorded /// 0030017 // sarcomere // not recorded 0003779 // actin binding // not recorded /// 0005200 // structural constituent of cytoskeleton // not recorded /// 0005523 // tropomyosin binding // not recorded /// 0016887 // ATPase activity // not recorded /// 0030172 // troponin C binding // not recorded /// 0030674 // protein binding, bridging // inferred from direct assay /// 0031013 // troponin I binding // inferred from physical interaction /// 0031013 // troponin I binding // not recorded 1367593_at NM_013027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013027.1 /DB_XREF=gi:6981525 /GEN=Sepw1 /FEA=FLmRNA /CNT=54 /TID=Rn.37192.1 /TIER=FL+Stack /STK=47 /UG=Rn.37192 /LL=25545 /DEF=Rattus norvegicus Selenoprotein W muscle 1 (Sepw1), mRNA. /PROD=selenoprotein W muscle 1 /FL=gb:U25264.1 gb:NM_013027.1 NM_013027 selenoprotein W, 1 Sepw1 25545 NM_013027 0010269 // response to selenium ion // inferred from expression pattern /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0008430 // selenium binding // inferred from electronic annotation 1367594_at NM_017087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017087.1 /DB_XREF=gi:8392982 /GEN=Bgn /FEA=FLmRNA /CNT=49 /TID=Rn.783.1 /TIER=FL+Stack /STK=47 /UG=Rn.783 /LL=25181 /DEF=Rattus norvegicus Small proteoglycan I (biglycan), bone (BSPG1) (bonecartilage proteclycan 1 precursor) (Bgn), mRNA. /PROD=small proteoglycan I (biglycan), bone (BSPG1)(bonecartilage proteclycan 1 precursor) /FL=gb:NM_017087.1 gb:U17834.1 NM_017087 biglycan Bgn 25181 NM_017087 0001974 // blood vessel remodeling // inferred from expression pattern /// 0019800 // peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan // inferred from electronic annotation /// 0019800 // peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from electronic annotation /// 0030133 // transport vesicle // not recorded /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042383 // sarcolemma // not recorded /// 0044424 // intracellular part // inferred from electronic annotation /// 0044424 // intracellular part // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005539 // glycosaminoglycan binding // inferred from electronic annotation /// 0005539 // glycosaminoglycan binding // not recorded /// 0050840 // extracellular matrix binding // inferred from electronic annotation /// 0050840 // extracellular matrix binding // not recorded 1367595_s_at NM_012512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012512.1 /DB_XREF=gi:7549745 /GEN=B2m /FEA=FLmRNA /CNT=72 /TID=Rn.1868.1 /TIER=FL+Stack /STK=46 /UG=Rn.1868 /LL=24223 /DEF=Rattus norvegicus Beta-2-microglobulin (B2m), mRNA. /PROD=beta-2-microglobulin /FL=gb:NM_012512.1 NM_012512 beta-2 microglobulin B2m 24223 NM_012512 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0001916 // positive regulation of T cell mediated cytotoxicity // not recorded /// 0002237 // response to molecule of bacterial origin // inferred from electronic annotation /// 0002237 // response to molecule of bacterial origin // not recorded /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0002481 // antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent // inferred from electronic annotation /// 0002481 // antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0046686 // response to cadmium ion // inferred from expression pattern 0000139 // Golgi membrane // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0031901 // early endosome membrane // not recorded /// 0042612 // MHC class I protein complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367596_at NM_013224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013224.1 /DB_XREF=gi:6981487 /GEN=Rps26 /FEA=FLmRNA /CNT=67 /TID=Rn.1059.1 /TIER=FL+Stack /STK=46 /UG=Rn.1059 /LL=27139 /DEF=Rattus norvegicus ribosomal protein S26 (Rps26), mRNA. /PROD=ribosomal protein S26 /FL=gb:NM_013224.1 NM_013224 ribosomal protein S26 Rps26 27139 NM_013224 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0033119 // negative regulation of RNA splicing // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // not recorded /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003729 // mRNA binding // not recorded /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367597_at NM_031706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031706.1 /DB_XREF=gi:13928985 /GEN=Rps8 /FEA=FLmRNA /CNT=79 /TID=Rn.3198.1 /TIER=FL+Stack /STK=46 /UG=Rn.3198 /LL=65136 /DEF=Rattus norvegicus ribosomal protein S8 (Rps8), mRNA. /PROD=ribosomal protein S8 /FL=gb:NM_031706.1 NM_031706 ribosomal protein S8 Rps8 65136 NM_031706 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367598_at NM_012681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012681.1 /DB_XREF=gi:6981683 /GEN=Ttr /FEA=FLmRNA /CNT=56 /TID=Rn.1404.1 /TIER=FL+Stack /STK=46 /UG=Rn.1404 /LL=24856 /DEF=Rattus norvegicus Transthyretin (prealbumin, amyloidosis type I) (Ttr), mRNA. /PROD=transthyretin (prealbumin, amyloidosis type I) /FL=gb:NM_012681.1 gb:AF479660.1 gb:K03252.1 NM_012681 transthyretin Ttr 24856 NM_012681 0006810 // transport // inferred from electronic annotation /// 0042403 // thyroid hormone metabolic process // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay 0005179 // hormone activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042562 // hormone binding // inferred from direct assay 1367599_at NM_017311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017311.1 /DB_XREF=gi:8392938 /GEN=Atp5g1 /FEA=FLmRNA /CNT=53 /TID=Rn.3357.1 /TIER=FL+Stack /STK=46 /UG=Rn.3357 /LL=29754 /DEF=Rattus norvegicus ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 (Atp5g1), mRNA. /PROD=ATP synthase, H+ transporting, mitochondrial F0complex, subunit c (subunit 9), isoform 1 /FL=gb:NM_017311.1 gb:D13123.1 NM_017311 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9) Atp5g1 29754 NM_017311 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from expression pattern /// 0046034 // ATP metabolic process // inferred from direct assay 0000276 // mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // non-traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0033177 // proton-transporting two-sector ATPase complex, proton-transporting domain // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation 0008289 // lipid binding // inferred from electronic annotation /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0046933 // hydrogen ion transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation 1367600_at NM_022531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022531.1 /DB_XREF=gi:11968117 /GEN=Des /FEA=FLmRNA /CNT=54 /TID=Rn.1657.1 /TIER=FL+Stack /STK=46 /UG=Rn.1657 /LL=64362 /DEF=Rattus norvegicus desmin (Des), mRNA. /PROD=desmin /FL=gb:NM_022531.1 NM_022531 desmin Des 64362 NM_022531 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005626 // insoluble fraction // inferred from electronic annotation /// 0005626 // insoluble fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005856 // cytoskeleton // not recorded /// 0005882 // intermediate filament // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0030018 // Z disc // not recorded /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042383 // sarcolemma // not recorded /// 0043292 // contractile fiber // inferred from electronic annotation /// 0043292 // contractile fiber // not recorded /// 0045098 // type III intermediate filament // inferred from mutant phenotype /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367601_at NM_053698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053698.1 /DB_XREF=gi:16758511 /GEN=Cited2 /FEA=FLmRNA /CNT=108 /TID=Rn.31765.1 /TIER=FL+Stack /STK=45 /UG=Rn.31765 /LL=114490 /DEF=Rattus norvegicus Cbpp300-interacting transactivator, with GluAsp-rich carboxy-terminal domain, 2 (Cited2), mRNA. /PROD=Cbpp300-interacting transactivator, withGluAsp-rich carboxy-terminal domain, 2 /FL=gb:NM_053698.1 gb:AF361476.1 NM_053698 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 Cited2 114490 NM_053698 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001568 // blood vessel development // not recorded /// 0001570 // vasculogenesis // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0001829 // trophectodermal cell differentiation // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001892 // embryonic placenta development // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // inferred from sequence or structural similarity /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from sequence or structural similarity /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from sequence or structural similarity /// 0008283 // cell proliferation // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0010628 // positive regulation of gene expression // inferred from sequence or structural similarity /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // not recorded /// 0010629 // negative regulation of gene expression // inferred from sequence or structural similarity /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0022409 // positive regulation of cell-cell adhesion // inferred from electronic annotation /// 0030325 // adrenal gland development // not recorded /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // not recorded /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from sequence or structural similarity /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0034405 // response to fluid shear stress // inferred from electronic annotation /// 0034405 // response to fluid shear stress // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045787 // positive regulation of cell cycle // inferred from sequence or structural similarity /// 0045787 // positive regulation of cell cycle // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0046697 // decidualization // not recorded /// 0060136 // embryonic process involved in female pregnancy // not recorded 0000790 // nuclear chromatin // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0003713 // transcription coactivator activity // inferred from sequence or structural similarity /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0050693 // LBD domain binding // inferred from electronic annotation /// 0050693 // LBD domain binding // not recorded 1367602_at AI013390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013390 /DB_XREF=gi:4133847 /DB_XREF=EST208065 /CLONE=RSPBK38 /FEA=FLmRNA /CNT=108 /TID=Rn.31765.1 /TIER=Stack /STK=28 /UG=Rn.31765 /LL=114490 /UG_GENE=Cited2 /UG_TITLE=Cbpp300-interacting transactivator, with GluAsp-rich carboxy-terminal domain, 2 /FL=gb:NM_053698.1 gb:AF361476.1 AI013390 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 Cited2 114490 NM_053698 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001568 // blood vessel development // not recorded /// 0001570 // vasculogenesis // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0001829 // trophectodermal cell differentiation // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001892 // embryonic placenta development // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // inferred from sequence or structural similarity /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from sequence or structural similarity /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from sequence or structural similarity /// 0008283 // cell proliferation // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0010628 // positive regulation of gene expression // inferred from sequence or structural similarity /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // not recorded /// 0010629 // negative regulation of gene expression // inferred from sequence or structural similarity /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0022409 // positive regulation of cell-cell adhesion // inferred from electronic annotation /// 0030325 // adrenal gland development // not recorded /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // not recorded /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from sequence or structural similarity /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0034405 // response to fluid shear stress // inferred from electronic annotation /// 0034405 // response to fluid shear stress // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045787 // positive regulation of cell cycle // inferred from sequence or structural similarity /// 0045787 // positive regulation of cell cycle // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0046697 // decidualization // not recorded /// 0060136 // embryonic process involved in female pregnancy // not recorded 0000790 // nuclear chromatin // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0003713 // transcription coactivator activity // inferred from sequence or structural similarity /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0050693 // LBD domain binding // inferred from electronic annotation /// 0050693 // LBD domain binding // not recorded 1367603_at NM_022922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022922.1 /DB_XREF=gi:12621073 /GEN=Tpi1 /FEA=FLmRNA /CNT=69 /TID=Rn.37838.1 /TIER=FL+Stack /STK=45 /UG=Rn.37838 /LL=24849 /DEF=Rattus norvegicus Triosephosphate isomerase 1 (Tpi1), mRNA. /PROD=triosephosphate isomerase 1 /FL=gb:L36250.1 gb:NM_022922.1 NM_022922 triosephosphate isomerase 1 Tpi1 24849 NM_022922 0005975 // carbohydrate metabolic process // inferred from direct assay /// 0006006 // glucose metabolic process // not recorded /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006096 // glycolysis // traceable author statement /// 0006096 // glycolysis // inferred from electronic annotation /// 0006098 // pentose-phosphate shunt // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0007275 // multicellular organismal development // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0019682 // glyceraldehyde-3-phosphate metabolic process // inferred from electronic annotation /// 0019682 // glyceraldehyde-3-phosphate metabolic process // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004807 // triose-phosphate isomerase activity // inferred from direct assay /// 0004807 // triose-phosphate isomerase activity // not recorded /// 0004807 // triose-phosphate isomerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0016853 // isomerase activity // inferred from electronic annotation /// 0016853 // isomerase activity // not recorded 1367604_at NM_022501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022501.1 /DB_XREF=gi:11968067 /GEN=Csrp2 /FEA=FLmRNA /CNT=51 /TID=Rn.4267.1 /TIER=FL+Stack /STK=45 /UG=Rn.4267 /LL=29317 /DEF=Rattus norvegicus cysteine-rich protein 2 (Csrp2), mRNA. /PROD=cysteine-rich protein 2 /FL=gb:D17512.1 gb:NM_022501.1 NM_022501 cysteine-rich protein 2 Crip2 338401 NM_022501 0008284 // positive regulation of cell proliferation // not recorded /// 0030097 // hemopoiesis // not recorded 0031012 // extracellular matrix // not recorded 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367605_at NM_022511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022511.1 /DB_XREF=gi:11968087 /GEN=Pfn1 /FEA=FLmRNA /CNT=68 /TID=Rn.1152.1 /TIER=FL+Stack /STK=44 /UG=Rn.1152 /LL=64303 /DEF=Rattus norvegicus profilin (Pfn1), mRNA. /PROD=profilin /FL=gb:NM_022511.1 NM_022511 profilin 1 Pfn1 64303 NM_022511 0001843 // neural tube closure // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0008154 // actin polymerization or depolymerization // traceable author statement /// 0010033 // response to organic substance // inferred from expression pattern /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050434 // positive regulation of viral transcription // inferred from mutant phenotype /// 0051054 // positive regulation of DNA metabolic process // inferred from direct assay /// 0051496 // positive regulation of stress fiber assembly // inferred from mutant phenotype /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern 0005576 // extracellular region // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0003779 // actin binding // not recorded /// 0003779 // actin binding // traceable author statement /// 0003779 // actin binding // inferred from electronic annotation /// 0005102 // receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from direct assay /// 0017048 // Rho GTPase binding // not recorded /// 0070064 // proline-rich region binding // not recorded 1367606_at NM_017153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017153.1 /DB_XREF=gi:8394220 /GEN=Rps3a /FEA=FLmRNA /CNT=70 /TID=Rn.11232.1 /TIER=FL+Stack /STK=44 /UG=Rn.11232 /LL=29288 /DEF=Rattus norvegicus ribosomal protein S3a (Rps3a), mRNA. /PROD=ribosomal protein S3a /FL=gb:M84716.1 gb:NM_017153.1 NM_017153 ribosomal protein S3a Rps3a 29288 NM_017153 0006412 // translation // not recorded /// 0006412 // translation // inferred from sequence or structural similarity /// 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005840 // ribosome // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367607_at NM_017202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017202.1 /DB_XREF=gi:8393179 /GEN=Cox4a /FEA=FLmRNA /CNT=68 /TID=Rn.2528.1 /TIER=FL+Stack /STK=43 /UG=Rn.2528 /LL=29445 /DEF=Rattus norvegicus cytochrome c oxidase, subunit IVa (Cox4a), mRNA. /PROD=cytochrome c oxidase, subunit IVa /FL=gb:NM_017202.1 NM_017202 cytochrome c oxidase subunit IV isoform 1 Cox4i1 29445 NM_017202 0007584 // response to nutrient // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367608_at NM_031689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031689.1 /DB_XREF=gi:13928955 /GEN=Cryba4 /FEA=FLmRNA /CNT=45 /TID=Rn.10802.1 /TIER=FL+Stack /STK=43 /UG=Rn.10802 /LL=64348 /DEF=Rattus norvegicus crystallin, beta A4 (Cryba4), mRNA. /PROD=crystallin, beta A4 /FL=gb:AF013247.1 gb:NM_031689.1 NM_031689 crystallin, beta A4 Cryba4 64348 NM_031689 0007601 // visual perception // not recorded /// 0043010 // camera-type eye development // not recorded 0005625 // soluble fraction // not recorded 0005212 // structural constituent of eye lens // inferred from direct assay /// 0005212 // structural constituent of eye lens // inferred from electronic annotation 1367609_at NM_031051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031051.1 /DB_XREF=gi:13591984 /GEN=Mif /FEA=FLmRNA /CNT=58 /TID=Rn.2661.1 /TIER=FL+Stack /STK=41 /UG=Rn.2661 /LL=81683 /DEF=Rattus norvegicus macrophage migration inhibitory factor (Mif), mRNA. /PROD=macrophage migration inhibitory factor /FL=gb:NM_031051.1 gb:U62326.1 gb:U20999.1 NM_031051 macrophage migration inhibitory factor Mif 81683 NM_031051 0001516 // prostaglandin biosynthetic process // not recorded /// 0001942 // hair follicle development // inferred from expression pattern /// 0002035 // brain renin-angiotensin system // inferred from mutant phenotype /// 0002675 // positive regulation of acute inflammatory response // inferred from mutant phenotype /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007283 // spermatogenesis // inferred from mutant phenotype /// 0007420 // brain development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0007569 // cell aging // not recorded /// 0008152 // metabolic process // not recorded /// 0008283 // cell proliferation // not recorded /// 0009408 // response to heat // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010629 // negative regulation of gene expression // not recorded /// 0010739 // positive regulation of protein kinase A signaling cascade // not recorded /// 0019752 // carboxylic acid metabolic process // not recorded /// 0030330 // DNA damage response, signal transduction by p53 class mediator // not recorded /// 0030890 // positive regulation of B cell proliferation // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0032572 // response to menaquinone // inferred from expression pattern /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0033138 // positive regulation of peptidyl-serine phosphorylation // not recorded /// 0033197 // response to vitamin E // inferred from expression pattern /// 0042060 // wound healing // inferred from expression pattern /// 0042127 // regulation of cell proliferation // not recorded /// 0042327 // positive regulation of phosphorylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042756 // drinking behavior // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // not recorded /// 0043268 // positive regulation of potassium ion transport // inferred from mutant phenotype /// 0043518 // negative regulation of DNA damage response, signal transduction by p53 class mediator // not recorded /// 0043588 // skin development // inferred from expression pattern /// 0045087 // innate immune response // inferred from electronic annotation /// 0045821 // positive regulation of glycolysis // inferred from mutant phenotype /// 0046326 // positive regulation of glucose import // inferred from mutant phenotype /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0048680 // positive regulation of axon regeneration // inferred from mutant phenotype /// 0050715 // positive regulation of cytokine secretion // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050778 // positive regulation of immune response // inferred from mutant phenotype /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0070207 // protein homotrimerization // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded /// 0071157 // negative regulation of cell cycle arrest // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0009986 // cell surface // not recorded 0004167 // dopachrome isomerase activity // not recorded /// 0004167 // dopachrome isomerase activity // inferred from sequence or structural similarity /// 0004167 // dopachrome isomerase activity // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005126 // cytokine receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0042056 // chemoattractant activity // not recorded /// 0043498 // cell surface binding // not recorded /// 0050178 // phenylpyruvate tautomerase activity // inferred from electronic annotation /// 0050178 // phenylpyruvate tautomerase activity // not recorded 1367610_at NM_031103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031103.1 /DB_XREF=gi:14389296 /GEN=Rpl19 /FEA=FLmRNA /CNT=68 /TID=Rn.3384.1 /TIER=FL+Stack /STK=40 /UG=Rn.3384 /LL=81767 /DEF=Rattus norvegicus ribosomal protein L19 (Rpl19), mRNA. /PROD=ribosomal protein L19 /FL=gb:NM_031103.1 gb:J02650.1 NM_031103 ribosomal protein L19 Rpl19 81767 NM_031103 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // not recorded 1367611_at BG667093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667093 /DB_XREF=gi:13889015 /DB_XREF=DRACFB11 /CLONE=DRACFB11 /FEA=FLmRNA /CNT=59 /TID=Rn.5950.1 /TIER=ConsEnd /STK=0 /UG=Rn.5950 /LL=64524 /UG_GENE=Tkt /UG_TITLE=transketolase /FL=gb:NM_022592.1 gb:U09256.1 BG667093 transketolase Tkt 64524 NM_022592 0006098 // pentose-phosphate shunt // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009052 // pentose-phosphate shunt, non-oxidative branch // inferred from direct assay /// 0040008 // regulation of growth // inferred from electronic annotation /// 0040008 // regulation of growth // not recorded /// 0046390 // ribose phosphate biosynthetic process // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005777 // peroxisome // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // not recorded 0000287 // magnesium ion binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004802 // transketolase activity // inferred from direct assay /// 0004802 // transketolase activity // not recorded /// 0004802 // transketolase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0030976 // thiamin pyrophosphate binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048029 // monosaccharide binding // inferred from direct assay 1367612_at NM_134349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134349.1 /DB_XREF=gi:19705452 /GEN=Mgst1 /FEA=FLmRNA /CNT=56 /TID=Rn.2580.1 /TIER=FL+Stack /STK=40 /UG=Rn.2580 /LL=171341 /DEF=Rattus norvegicus microsomal glutathione S-transferase 1 (Mgst1), mRNA. /PROD=microsomal glutathione S-transferase 1 /FL=gb:J03752.1 gb:NM_134349.1 NM_134349 microsomal glutathione S-transferase 1 Mgst1 171341 NM_134349 0006749 // glutathione metabolic process // inferred from electronic annotation /// 0006749 // glutathione metabolic process // not recorded /// 0010243 // response to organic nitrogen // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from direct assay /// 0033327 // Leydig cell differentiation // inferred from expression pattern /// 0042493 // response to drug // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from direct assay 0004364 // glutathione transferase activity // inferred from direct assay /// 0004364 // glutathione transferase activity // not recorded /// 0004364 // glutathione transferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay 1367613_at NM_057114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057114.1 /DB_XREF=gi:16923957 /GEN=Prdx1 /FEA=FLmRNA /CNT=66 /TID=Rn.2845.1 /TIER=FL+Stack /STK=38 /UG=Rn.2845 /LL=117254 /DEF=Rattus norvegicus peroxiredoxin 1 (Prdx1), mRNA. /PROD=peroxiredoxin 1 /FL=gb:D30035.1 gb:NM_057114.1 NM_057114 peroxiredoxin 1 Prdx1 117254 NM_057114 0000302 // response to reactive oxygen species // not recorded /// 0006979 // response to oxidative stress // inferred from direct assay /// 0006979 // response to oxidative stress // not recorded /// 0008283 // cell proliferation // not recorded /// 0019430 // removal of superoxide radicals // not recorded /// 0032872 // regulation of stress-activated MAPK cascade // not recorded /// 0034101 // erythrocyte homeostasis // not recorded /// 0042267 // natural killer cell mediated cytotoxicity // not recorded /// 0042345 // regulation of NF-kappaB import into nucleus // not recorded /// 0042744 // hydrogen peroxide catabolic process // not recorded /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005719 // nuclear euchromatin // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005782 // peroxisomal matrix // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation 0004601 // peroxidase activity // inferred from electronic annotation /// 0004601 // peroxidase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008379 // thioredoxin peroxidase activity // not recorded /// 0016209 // antioxidant activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0051920 // peroxiredoxin activity // inferred from direct assay /// 0051920 // peroxiredoxin activity // inferred from electronic annotation 1367614_at NM_012904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012904.1 /DB_XREF=gi:6978500 /GEN=Anxa1 /FEA=FLmRNA /CNT=58 /TID=Rn.1792.1 /TIER=FL+Stack /STK=38 /UG=Rn.1792 /LL=25380 /DEF=Rattus norvegicus Annexin 1 (p35) (Lipocortin 1) (Anxa1), mRNA. /PROD=annexin 1 (p35) (Lipocortin 1) /FL=gb:M19967.1 gb:NM_012904.1 NM_012904 annexin A1 Anxa1 25380 NM_012904 0002674 // negative regulation of acute inflammatory response // inferred from direct assay /// 0007049 // cell cycle // not recorded /// 0007165 // signal transduction // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from direct assay /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0010165 // response to X-ray // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0018149 // peptide cross-linking // not recorded /// 0030073 // insulin secretion // inferred from direct assay /// 0030216 // keratinocyte differentiation // not recorded /// 0031018 // endocrine pancreas development // inferred from expression pattern /// 0031340 // positive regulation of vesicle fusion // not recorded /// 0031394 // positive regulation of prostaglandin biosynthetic process // inferred from mutant phenotype /// 0031960 // response to corticosteroid stimulus // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0042063 // gliogenesis // inferred from expression pattern /// 0042127 // regulation of cell proliferation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0050482 // arachidonic acid secretion // not recorded /// 0050709 // negative regulation of protein secretion // inferred from mutant phenotype /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0060206 // estrous cycle phase // inferred from expression pattern /// 0070301 // cellular response to hydrogen peroxide // inferred from mutant phenotype /// 0070365 // hepatocyte differentiation // inferred from expression pattern /// 0070555 // response to interleukin-1 // inferred from expression pattern 0001533 // cornified envelope // not recorded /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0042383 // sarcolemma // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003727 // single-stranded RNA binding // inferred from direct assay /// 0004859 // phospholipase inhibitor activity // inferred from electronic annotation /// 0005198 // structural molecule activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005543 // phospholipid binding // inferred from direct assay /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // not recorded /// 0005544 // calcium-dependent phospholipid binding // traceable author statement /// 0019834 // phospholipase A2 inhibitor activity // inferred from direct assay /// 0019834 // phospholipase A2 inhibitor activity // inferred from electronic annotation /// 0030674 // protein binding, bridging // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay 1367615_at NM_133516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133516.1 /DB_XREF=gi:19424157 /GEN=Svs5 /FEA=FLmRNA /CNT=41 /TID=Rn.9941.1 /TIER=FL+Stack /STK=38 /UG=Rn.9941 /LL=171027 /DEF=Rattus norvegicus seminal vesicle secretion 5 (Svs5), mRNA. /PROD=seminal vesicle secretion 5 /FL=gb:NM_133516.1 NM_133516 seminal vesicle secretory protein 5 Svs5 171027 NM_133516 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 1367616_at NM_031545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031545.1 /DB_XREF=gi:13928737 /GEN=Nppb /FEA=FLmRNA /CNT=43 /TID=Rn.3835.1 /TIER=FL+Stack /STK=38 /UG=Rn.3835 /LL=25105 /DEF=Rattus norvegicus Brain natriuretic factor (Nppb), mRNA. /PROD=brain natriuretic factor /FL=gb:M25297.1 gb:NM_031545.1 NM_031545 natriuretic peptide precursor B Nppb 25105 NM_031545 0001666 // response to hypoxia // inferred from expression pattern /// 0006182 // cGMP biosynthetic process // inferred from direct assay /// 0006182 // cGMP biosynthetic process // not recorded /// 0006954 // inflammatory response // inferred from expression pattern /// 0007168 // receptor guanylyl cyclase signaling pathway // not recorded /// 0007168 // receptor guanylyl cyclase signaling pathway // inferred from sequence or structural similarity /// 0007507 // heart development // inferred from expression pattern /// 0008217 // regulation of blood pressure // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from direct assay /// 0050880 // regulation of blood vessel size // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005102 // receptor binding // not recorded /// 0005179 // hormone activity // inferred from direct assay /// 0005179 // hormone activity // inferred from electronic annotation /// 0051428 // peptide hormone receptor binding // inferred from direct assay 1367617_at NM_012495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012495.1 /DB_XREF=gi:6978486 /GEN=Aldoa /FEA=FLmRNA /CNT=58 /TID=Rn.1774.1 /TIER=FL+Stack /STK=37 /UG=Rn.1774 /LL=24189 /DEF=Rattus norvegicus Aldolase A, fructose-bisphosphate (Aldoa), mRNA. /PROD=aldolase A, fructose-bisphosphate /FL=gb:M14420.1 gb:M12919.1 gb:NM_012495.1 NM_012495 aldolase A, fructose-bisphosphate Aldoa 24189 NM_001177305 /// NM_012495 0001666 // response to hypoxia // inferred from expression pattern /// 0006000 // fructose metabolic process // not recorded /// 0006096 // glycolysis // inferred from electronic annotation /// 0006096 // glycolysis // not recorded /// 0006754 // ATP biosynthetic process // not recorded /// 0006941 // striated muscle contraction // not recorded /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0009408 // response to heat // inferred from expression pattern /// 0030388 // fructose 1,6-bisphosphate metabolic process // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0035094 // response to nicotine // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0046716 // muscle cell homeostasis // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0015629 // actin cytoskeleton // not recorded /// 0019861 // flagellum // inferred from electronic annotation /// 0019861 // flagellum // not recorded /// 0070062 // extracellular vesicular exosome // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004332 // fructose-bisphosphate aldolase activity // inferred from electronic annotation /// 0004332 // fructose-bisphosphate aldolase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008092 // cytoskeletal protein binding // not recorded /// 0016829 // lyase activity // inferred from electronic annotation /// 0070061 // fructose binding // not recorded 1367618_a_at NM_130734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130734.1 /DB_XREF=gi:18543330 /GEN=Gnb2l1 /FEA=FLmRNA /CNT=54 /TID=Rn.55487.1 /TIER=FL+Stack /STK=36 /UG=Rn.55487 /LL=83427 /DEF=Rattus norvegicus guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 (Gnb2l1), mRNA. /PROD=guanine nucleotide binding protein (G protein),beta polypeptide /FL=gb:NM_130734.1 gb:U03390.1 NM_130734 guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1 Gnb2l1 83427 NM_130734 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // traceable author statement 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043025 // neuronal cell body // inferred from sequence or structural similarity /// 0043025 // neuronal cell body // inferred from electronic annotation 0005080 // protein kinase C binding // inferred from direct assay /// 0005080 // protein kinase C binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019903 // protein phosphatase binding // not recorded 1367619_at NM_021766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021766.1 /DB_XREF=gi:11120719 /GEN=25Dx /FEA=FLmRNA /CNT=55 /TID=Rn.37311.1 /TIER=FL+Stack /STK=36 /UG=Rn.37311 /LL=60390 /DEF=Rattus norvegicus 25-Dx protein (25Dx), mRNA. /PROD=25-Dx protein /FL=gb:AF163321.1 gb:NM_021766.1 gb:U63315.1 NM_021766 progesterone receptor membrane component 1 Pgrmc1 291948 NM_021766 0007411 // axon guidance // inferred from expression pattern 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005496 // steroid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation 1367620_at NM_053756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053756.1 /DB_XREF=gi:16758591 /GEN=Atp5g3 /FEA=FLmRNA /CNT=41 /TID=Rn.2180.1 /TIER=FL+Stack /STK=36 /UG=Rn.2180 /LL=114630 /DEF=Rattus norvegicus ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) isoform 3 (Atp5g3), mRNA. /PROD=ATP synthase, H+ transporting, mitochondrial F0complex, subunit c (subunit 9) isoform 3 /FL=gb:AF315374.1 gb:NM_053756.1 NM_053756 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) Atp5g3 114630 NM_053756 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from expression pattern 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0033177 // proton-transporting two-sector ATPase complex, proton-transporting domain // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0046933 // hydrogen ion transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation 1367621_at NM_022546 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022546.1 /DB_XREF=gi:11968141 /GEN=Dapkl /FEA=FLmRNA /CNT=42 /TID=Rn.2311.1 /TIER=FL+Stack /STK=36 /UG=Rn.2311 /LL=64391 /DEF=Rattus norvegicus Death-associated like kinase (Dapkl), mRNA. /PROD=Death-associated like kinase /FL=gb:NM_022546.1 NM_022546 death-associated protein kinase 3 Dapk3 64391 NM_022546 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from direct assay /// 0006917 // induction of apoptosis // inferred from mutant phenotype /// 0006917 // induction of apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from direct assay /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from direct assay 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0043522 // leucine zipper domain binding // inferred from electronic annotation /// 0043522 // leucine zipper domain binding // not recorded 1367622_at NM_019383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019383.1 /DB_XREF=gi:9506410 /GEN=Atp5jd /FEA=FLmRNA /CNT=55 /TID=Rn.80.1 /TIER=FL+Stack /STK=35 /UG=Rn.80 /LL=56080 /DEF=Rattus norvegicus ATP synthase subunit d (Atp5jd), mRNA. /PROD=ATP synthase subunit d /FL=gb:D13120.1 gb:D10021.1 gb:NM_019383.1 NM_019383 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d Atp5h 641434 NM_019383 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0046034 // ATP metabolic process // inferred from direct assay 0000276 // mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) // inferred from direct assay /// 0000276 // mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation 0015078 // hydrogen ion transmembrane transporter activity // traceable author statement /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation 1367623_at NM_031102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031102.1 /DB_XREF=gi:13592056 /GEN=Rpl18 /FEA=FLmRNA /CNT=58 /TID=Rn.484.1 /TIER=FL+Stack /STK=35 /UG=Rn.484 /LL=81766 /DEF=Rattus norvegicus ribosomal protein L18 (Rpl18), mRNA. /PROD=ribosomal protein L18 /FL=gb:M20156.1 gb:NM_031102.1 NM_031102 ribosomal protein L18 Rpl18 81766 NM_031102 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1367624_at NM_024403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024403.1 /DB_XREF=gi:13242321 /GEN=Atf4 /FEA=FLmRNA /CNT=56 /TID=Rn.2423.1 /TIER=FL+Stack /STK=35 /UG=Rn.2423 /LL=79255 /DEF=Rattus norvegicus activating transcription factor ATF-4 (Atf4), mRNA. /PROD=activating transcription factor ATF-4 /FL=gb:AF252627.1 gb:NM_024403.1 NM_024403 activating transcription factor 4 (tax-responsive enhancer element B67) Atf4 79255 NM_024403 0006094 // gluconeogenesis // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006950 // response to stress // not recorded /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from direct assay /// 0034976 // response to endoplasmic reticulum stress // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0032590 // dendrite membrane // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003704 // specific RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // traceable author statement /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1367625_at NM_031100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031100.1 /DB_XREF=gi:13592052 /GEN=Rpl10 /FEA=FLmRNA /CNT=72 /TID=Rn.5976.1 /TIER=FL+Stack /STK=34 /UG=Rn.5976 /LL=81764 /DEF=Rattus norvegicus ribosomal protein L10 (Rpl10), mRNA. /PROD=ribosomal protein L10 /FL=gb:NM_031100.1 NM_031100 ribosomal protein L10 Rpl10 81764 NM_031100 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // non-traceable author statement /// 0022625 // cytosolic large ribosomal subunit // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // not recorded 1367626_at NM_012530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012530.1 /DB_XREF=gi:6978660 /GEN=Ckm /FEA=FLmRNA /CNT=40 /TID=Rn.10756.1 /TIER=FL+Stack /STK=34 /UG=Rn.10756 /LL=24265 /DEF=Rattus norvegicus Creatine kinase, muscle form (Ckm), mRNA. /PROD=creatine kinase, muscle form /FL=gb:M10140.1 gb:NM_012530.1 NM_012530 creatine kinase, muscle Ckm 24265 NM_012530 0006600 // creatine metabolic process // not recorded /// 0016310 // phosphorylation // not recorded /// 0046314 // phosphocreatine biosynthetic process // inferred from direct assay /// 0046314 // phosphocreatine biosynthetic process // not recorded /// 0046314 // phosphocreatine biosynthetic process // traceable author statement /// 0046314 // phosphocreatine biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004111 // creatine kinase activity // inferred from direct assay /// 0004111 // creatine kinase activity // not recorded /// 0004111 // creatine kinase activity // traceable author statement /// 0004111 // creatine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation 1367627_at NM_031031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031031.1 /DB_XREF=gi:13591948 /GEN=Gatm /FEA=FLmRNA /CNT=40 /TID=Rn.33427.1 /TIER=FL+Stack /STK=34 /UG=Rn.33427 /LL=81660 /DEF=Rattus norvegicus L-arginine: glycine amidinotransferase (Gatm), mRNA. /PROD=L-arginine: glycine amidinotransferase /FL=gb:NM_031031.1 NM_031031 glycine amidinotransferase (L-arginine:glycine amidinotransferase) Gatm 81660 NM_031031 0006600 // creatine metabolic process // not recorded /// 0006601 // creatine biosynthetic process // not recorded /// 0006601 // creatine biosynthetic process // traceable author statement /// 0006601 // creatine biosynthetic process // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0007584 // response to nutrient // inferred from direct assay /// 0009790 // embryo development // inferred from expression pattern /// 0010033 // response to organic substance // inferred from direct assay /// 0042246 // tissue regeneration // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0046689 // response to mercury ion // inferred from direct assay 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015067 // amidinotransferase activity // inferred from direct assay /// 0015068 // glycine amidinotransferase activity // inferred from electronic annotation /// 0015068 // glycine amidinotransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation 1367628_at NM_019904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019904.1 /DB_XREF=gi:9845260 /GEN=Lgals1 /FEA=FLmRNA /CNT=74 /TID=Rn.57.1 /TIER=FL+Stack /STK=33 /UG=Rn.57 /LL=56646 /DEF=Rattus norvegicus beta-galactoside-binding lectin (Lgals1), mRNA. /PROD=beta-galactoside-binding lectin /FL=gb:M19036.1 gb:NM_019904.1 NM_019904 lectin, galactoside-binding, soluble, 1 Lgals1 56646 NM_019904 0010812 // negative regulation of cell-substrate adhesion // inferred from direct assay /// 0010977 // negative regulation of neuron projection development // inferred from mutant phenotype /// 0033555 // multicellular organismal response to stress // inferred from expression pattern /// 0034120 // positive regulation of erythrocyte aggregation // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0045445 // myoblast differentiation // inferred from electronic annotation /// 0045445 // myoblast differentiation // not recorded /// 0048678 // response to axon injury // inferred from expression pattern /// 0071333 // cellular response to glucose stimulus // inferred from expression pattern /// 0071407 // cellular response to organic cyclic substance // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0031012 // extracellular matrix // not recorded 0001948 // glycoprotein binding // inferred from physical interaction /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0016936 // galactoside binding // inferred from electronic annotation /// 0030395 // lactose binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043236 // laminin binding // inferred from direct assay 1367629_at NM_022503 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022503.1 /DB_XREF=gi:11968071 /GEN=Cox7a3 /FEA=FLmRNA /CNT=49 /TID=Rn.1745.1 /TIER=FL+Stack /STK=33 /UG=Rn.1745 /LL=29507 /DEF=Rattus norvegicus cytochrome c oxidase subunit VIIa 3 (Cox7a3), mRNA. /PROD=cytochrome c oxidase subunit VIIa 3 /FL=gb:NM_022503.1 NM_022503 cytochrome c oxidase subunit VIIa polypeptide 2 Cox7a2 29507 NM_022503 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005746 // mitochondrial respiratory chain // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation 1367630_at NM_031110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031110.1 /DB_XREF=gi:13592070 /GEN=Rps11 /FEA=FLmRNA /CNT=44 /TID=Rn.2177.1 /TIER=FL+Stack /STK=33 /UG=Rn.2177 /LL=81774 /DEF=Rattus norvegicus ribosomal protein S11 (Rps11), mRNA. /PROD=ribosomal protein S11 /FL=gb:K03250.1 gb:NM_031110.1 NM_031110 ribosomal protein S11 Rps11 81774 NM_031110 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019843 // rRNA binding // inferred from electronic annotation 1367631_at NM_022266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022266.1 /DB_XREF=gi:11560084 /GEN=Ctgf /FEA=FLmRNA /CNT=48 /TID=Rn.17145.1 /TIER=FL+Stack /STK=33 /UG=Rn.17145 /LL=64032 /DEF=Rattus norvegicus connective tissue growth factor (Ctgf), mRNA. /PROD=connective tissue growth factor /FL=gb:AF120275.1 gb:NM_022266.1 gb:AB023068.1 NM_022266 connective tissue growth factor Ctgf 64032 NM_022266 0001502 // cartilage condensation // inferred from electronic annotation /// 0001502 // cartilage condensation // not recorded /// 0001503 // ossification // inferred from electronic annotation /// 0001503 // ossification // not recorded /// 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // traceable author statement /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001558 // regulation of cell growth // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0006260 // DNA replication // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010260 // organ senescence // inferred from expression pattern /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0010942 // positive regulation of cell death // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030324 // lung development // inferred from expression pattern /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032967 // positive regulation of collagen biosynthetic process // inferred from mutant phenotype /// 0034059 // response to anoxia // inferred from expression pattern /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043280 // positive regulation of caspase activity // inferred from mutant phenotype /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0050867 // positive regulation of cell activation // inferred from mutant phenotype /// 0051385 // response to mineralocorticoid stimulus // inferred from expression pattern /// 0060401 // cytosolic calcium ion transport // inferred from mutant phenotype /// 0060452 // positive regulation of cardiac muscle contraction // inferred from mutant phenotype /// 0070278 // extracellular matrix constituent secretion // inferred from mutant phenotype /// 0070318 // positive regulation of G0 to G1 transition // inferred from mutant phenotype /// 0070542 // response to fatty acid // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005801 // cis-Golgi network // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0001968 // fibronectin binding // inferred from direct assay /// 0005178 // integrin binding // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from direct assay /// 0008201 // heparin binding // not recorded /// 0008201 // heparin binding // traceable author statement /// 0008201 // heparin binding // inferred from electronic annotation 1367632_at NM_017073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017073.1 /DB_XREF=gi:8393455 /GEN=Glul /FEA=FLmRNA /CNT=89 /TID=Rn.2204.1 /TIER=FL+Stack /STK=32 /UG=Rn.2204 /LL=24957 /DEF=Rattus norvegicus Glutamine synthetase (glutamate-ammonia ligase) (Glul), mRNA. /PROD=glutamine synthetase (glutamate-ammonia ligase) /FL=gb:M91652.1 gb:M29579.1 gb:NM_017073.1 NM_017073 glutamate-ammonia ligase (glutamine synthetase) Glul 24957 NM_017073 0006536 // glutamate metabolic process // inferred from direct assay /// 0006542 // glutamine biosynthetic process // inferred from direct assay /// 0006542 // glutamine biosynthetic process // inferred from electronic annotation /// 0006807 // nitrogen compound metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0009749 // response to glucose stimulus // not recorded /// 0019676 // ammonia assimilation cycle // inferred from direct assay /// 0019676 // ammonia assimilation cycle // traceable author statement /// 0032024 // positive regulation of insulin secretion // inferred from mutant phenotype /// 0042133 // neurotransmitter metabolic process // traceable author statement /// 0050679 // positive regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype 0005622 // intracellular // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // not recorded /// 0019717 // synaptosome // inferred from direct assay /// 0042995 // cell projection // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004351 // glutamate decarboxylase activity // inferred from electronic annotation /// 0004356 // glutamate-ammonia ligase activity // inferred from direct assay /// 0004356 // glutamate-ammonia ligase activity // not recorded /// 0004356 // glutamate-ammonia ligase activity // traceable author statement /// 0004356 // glutamate-ammonia ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016595 // glutamate binding // inferred from direct assay /// 0016829 // lyase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from direct assay /// 0042802 // identical protein binding // not recorded /// 0045503 // dynein light chain binding // inferred from physical interaction 1367633_at BI296610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296610 /DB_XREF=gi:14961206 /DB_XREF=UI-R-CV2-cgt-c-03-0-UI.s1 /CLONE=UI-R-CV2-cgt-c-03-0-UI /FEA=FLmRNA /CNT=89 /TID=Rn.2204.1 /TIER=Stack /STK=6 /UG=Rn.2204 /LL=24957 /UG_GENE=Glul /UG_TITLE=Glutamine synthetase (glutamate-ammonia ligase) /FL=gb:M91652.1 gb:M29579.1 gb:NM_017073.1 BI296610 glutamate-ammonia ligase (glutamine synthetase) Glul 24957 NM_017073 0006536 // glutamate metabolic process // inferred from direct assay /// 0006542 // glutamine biosynthetic process // inferred from direct assay /// 0006542 // glutamine biosynthetic process // inferred from electronic annotation /// 0006807 // nitrogen compound metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0009749 // response to glucose stimulus // not recorded /// 0019676 // ammonia assimilation cycle // inferred from direct assay /// 0019676 // ammonia assimilation cycle // traceable author statement /// 0032024 // positive regulation of insulin secretion // inferred from mutant phenotype /// 0042133 // neurotransmitter metabolic process // traceable author statement /// 0050679 // positive regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype 0005622 // intracellular // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // not recorded /// 0019717 // synaptosome // inferred from direct assay /// 0042995 // cell projection // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004351 // glutamate decarboxylase activity // inferred from electronic annotation /// 0004356 // glutamate-ammonia ligase activity // inferred from direct assay /// 0004356 // glutamate-ammonia ligase activity // not recorded /// 0004356 // glutamate-ammonia ligase activity // traceable author statement /// 0004356 // glutamate-ammonia ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016595 // glutamate binding // inferred from direct assay /// 0016829 // lyase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from direct assay /// 0042802 // identical protein binding // not recorded /// 0045503 // dynein light chain binding // inferred from physical interaction 1367634_at NM_022506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022506.1 /DB_XREF=gi:11968077 /GEN=Rpl31 /FEA=FLmRNA /CNT=42 /TID=Rn.1101.1 /TIER=FL+Stack /STK=32 /UG=Rn.1101 /LL=64298 /DEF=Rattus norvegicus ribosomal protein L31 (Rpl31), mRNA. /PROD=ribosomal protein L31 /FL=gb:NM_022506.1 NM_022506 ribosomal protein L31 Rpl31 64298 NM_022506 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367635_at NM_012998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012998.1 /DB_XREF=gi:6981323 /GEN=P4hb /FEA=FLmRNA /CNT=50 /TID=Rn.4234.1 /TIER=FL+Stack /STK=32 /UG=Rn.4234 /LL=25506 /DEF=Rattus norvegicus Protein disulfide isomerase (Prolyl 4-hydroxylase, beta polypeptide) (P4hb), mRNA. /PROD=protein disulfide isomerase (Prolyl4-hydroxylase, beta polypeptide) /FL=gb:NM_012998.1 NM_012998 prolyl 4-hydroxylase, beta polypeptide P4hb 25506 NM_012998 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0018401 // peptidyl-proline hydroxylation to 4-hydroxy-L-proline // inferred from electronic annotation /// 0018401 // peptidyl-proline hydroxylation to 4-hydroxy-L-proline // not recorded /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005793 // ER-Golgi intermediate compartment // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0003756 // protein disulfide isomerase activity // inferred from mutant phenotype /// 0003756 // protein disulfide isomerase activity // inferred from electronic annotation /// 0004656 // procollagen-proline 4-dioxygenase activity // inferred from electronic annotation /// 0004656 // procollagen-proline 4-dioxygenase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1367636_at NM_012756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012756.1 /DB_XREF=gi:6981077 /GEN=Igf2r /FEA=FLmRNA /CNT=64 /TID=Rn.270.1 /TIER=FL+Stack /STK=32 /UG=Rn.270 /LL=25151 /DEF=Rattus norvegicus Insulin-like growth factor 2 receptor (Igf2r), mRNA. /PROD=insulin-like growth factor 2 receptor /FL=gb:U59809.1 gb:NM_012756.1 NM_012756 insulin-like growth factor 2 receptor Igf2r 25151 NM_012756 0001889 // liver development // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007283 // spermatogenesis // inferred from expression pattern /// 0009791 // post-embryonic development // inferred from expression pattern /// 0015031 // protein transport // traceable author statement /// 0031100 // organ regeneration // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from direct assay /// 0042981 // regulation of apoptosis // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype 0005615 // extracellular space // inferred from direct assay /// 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005641 // nuclear envelope lumen // inferred from electronic annotation /// 0005641 // nuclear envelope lumen // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0030139 // endocytic vesicle // not recorded /// 0030140 // trans-Golgi network transport vesicle // inferred from electronic annotation /// 0030140 // trans-Golgi network transport vesicle // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0001948 // glycoprotein binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // not recorded /// 0001965 // G-protein alpha-subunit binding // inferred from direct assay /// 0001972 // retinoic acid binding // inferred from direct assay /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from mutant phenotype /// 0005010 // insulin-like growth factor receptor activity // traceable author statement /// 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005520 // insulin-like growth factor binding // not recorded /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0005537 // mannose binding // inferred from electronic annotation /// 0005537 // mannose binding // not recorded /// 0019899 // enzyme binding // inferred from direct assay /// 0031995 // insulin-like growth factor II binding // inferred from direct assay /// 0051219 // phosphoprotein binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // not recorded 1367637_a_at NM_022498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022498.1 /DB_XREF=gi:11968061 /GEN=Ppp1cc /FEA=FLmRNA /CNT=45 /TID=Rn.1495.1 /TIER=FL+Stack /STK=32 /UG=Rn.1495 /LL=24669 /DEF=Rattus norvegicus Protein phosphatase 1, catalytic subunit, gamma isoform 1 (Ppp1cc), mRNA. /PROD=protein phosphatase 1, catalytic subunit, gammaisoform 1 /FL=gb:D90165.1 gb:NM_022498.1 NM_022498 protein phosphatase 1, catalytic subunit, gamma isoform Ppp1cc 24669 NM_022498 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0046822 // regulation of nucleocytoplasmic transport // inferred from electronic annotation /// 0046822 // regulation of nucleocytoplasmic transport // not recorded /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from direct assay /// 0043234 // protein complex // not recorded /// 0070688 // MLL5-L complex // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1367638_at NM_053477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053477.1 /DB_XREF=gi:16758229 /GEN=Mlycd /FEA=FLmRNA /CNT=34 /TID=Rn.13468.1 /TIER=FL+Stack /STK=32 /UG=Rn.13468 /LL=85239 /DEF=Rattus norvegicus malonyl-CoA decarboxylase (Mlycd), mRNA. /PROD=malonyl-CoA decarboxylase /FL=gb:AF304865.1 gb:NM_053477.1 NM_053477 malonyl-CoA decarboxylase Mlycd 85239 NM_053477 0006085 // acetyl-CoA biosynthetic process // inferred from direct assay /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0019395 // fatty acid oxidation // inferred from direct assay /// 0031998 // regulation of fatty acid beta-oxidation // inferred from direct assay /// 0046320 // regulation of fatty acid oxidation // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation /// 0050080 // malonyl-CoA decarboxylase activity // inferred from direct assay /// 0050080 // malonyl-CoA decarboxylase activity // inferred from electronic annotation 1367639_a_at U92700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U92700.1 /DB_XREF=gi:2920832 /FEA=FLmRNA /CNT=1 /TID=Rn.2115.2 /TIER=FL /STK=1 /UG=Rn.2115 /LL=83789 /UG_GENE=Rps2 /DEF=Rattus norvegicus ribosomal protein S2 mRNA, complete cds. /PROD=ribosomal protein S2 /FL=gb:U92700.1 U92700 ribosomal protein S2-like /// ribosomal protein S2 LOC100360710 /// Rps2 100360710 /// 83789 NM_031838 /// XM_002727165 /// XM_002727166 /// XM_002727167 /// XM_002729999 /// XM_002730000 /// XM_002730001 0000028 // ribosomal small subunit assembly // inferred from mutant phenotype /// 0001731 // formation of translation preinitiation complex // inferred from mutant phenotype /// 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from mutant phenotype /// 0003735 // structural constituent of ribosome // not recorded /// 0005515 // protein binding // not recorded /// 0032403 // protein complex binding // inferred from mutant phenotype /// 0048602 // fibroblast growth factor 1 binding // not recorded /// 0048604 // fibroblast growth factor 3 binding // not recorded 1367640_at NM_031709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031709.1 /DB_XREF=gi:13928991 /GEN=Rps12 /FEA=FLmRNA /CNT=56 /TID=Rn.8400.1 /TIER=FL+Stack /STK=31 /UG=Rn.8400 /LL=65139 /DEF=Rattus norvegicus ribosomal protein S12 (Rps12), mRNA. /PROD=ribosomal protein S12 /FL=gb:NM_031709.1 gb:M18547.1 NM_031709 ribosomal protein S12 Rps12 65139 NM_031709 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1367641_at NM_017050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017050.1 /DB_XREF=gi:8394327 /GEN=Sod1 /FEA=FLmRNA /CNT=54 /TID=Rn.6059.1 /TIER=FL+Stack /STK=31 /UG=Rn.6059 /LL=24786 /DEF=Rattus norvegicus Superoxide dismutase 1, soluble (Sod1), mRNA. /PROD=superoxide dismutase 1, soluble /FL=gb:NM_017050.1 gb:M21060.1 gb:M25157.1 NM_017050 superoxide dismutase 1, soluble Sod1 24786 NM_017050 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0000187 // activation of MAPK activity // inferred from sequence or structural similarity /// 0000302 // response to reactive oxygen species // not recorded /// 0000302 // response to reactive oxygen species // inferred from electronic annotation /// 0000303 // response to superoxide // inferred from electronic annotation /// 0000303 // response to superoxide // not recorded /// 0000303 // response to superoxide // inferred from sequence or structural similarity /// 0001541 // ovarian follicle development // inferred from electronic annotation /// 0001541 // ovarian follicle development // not recorded /// 0001541 // ovarian follicle development // inferred from sequence or structural similarity /// 0001819 // positive regulation of cytokine production // inferred from electronic annotation /// 0001819 // positive regulation of cytokine production // not recorded /// 0001819 // positive regulation of cytokine production // inferred from sequence or structural similarity /// 0001895 // retina homeostasis // inferred from electronic annotation /// 0001895 // retina homeostasis // not recorded /// 0001895 // retina homeostasis // inferred from sequence or structural similarity /// 0001975 // response to amphetamine // inferred from expression pattern /// 0002262 // myeloid cell homeostasis // inferred from electronic annotation /// 0002262 // myeloid cell homeostasis // not recorded /// 0002262 // myeloid cell homeostasis // inferred from sequence or structural similarity /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006302 // double-strand break repair // not recorded /// 0006302 // double-strand break repair // inferred from sequence or structural similarity /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // inferred from electronic annotation /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // not recorded /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // inferred from sequence or structural similarity /// 0006749 // glutathione metabolic process // inferred from electronic annotation /// 0006749 // glutathione metabolic process // not recorded /// 0006749 // glutathione metabolic process // inferred from sequence or structural similarity /// 0006801 // superoxide metabolic process // inferred from direct assay /// 0006801 // superoxide metabolic process // not recorded /// 0006801 // superoxide metabolic process // traceable author statement /// 0006801 // superoxide metabolic process // inferred from electronic annotation /// 0006801 // superoxide metabolic process // inferred from sequence or structural similarity /// 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // not recorded /// 0006879 // cellular iron ion homeostasis // inferred from sequence or structural similarity /// 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0006979 // response to oxidative stress // inferred from mutant phenotype /// 0006979 // response to oxidative stress // not recorded /// 0006979 // response to oxidative stress // traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from sequence or structural similarity /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007283 // spermatogenesis // inferred from sequence or structural similarity /// 0007566 // embryo implantation // inferred from electronic annotation /// 0007566 // embryo implantation // not recorded /// 0007566 // embryo implantation // inferred from sequence or structural similarity /// 0007568 // aging // not recorded /// 0007568 // aging // inferred from electronic annotation /// 0007569 // cell aging // inferred from electronic annotation /// 0007569 // cell aging // not recorded /// 0007569 // cell aging // inferred from sequence or structural similarity /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0007605 // sensory perception of sound // inferred from sequence or structural similarity /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0007626 // locomotory behavior // inferred from sequence or structural similarity /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008217 // regulation of blood pressure // not recorded /// 0008217 // regulation of blood pressure // inferred from sequence or structural similarity /// 0009408 // response to heat // inferred from electronic annotation /// 0009408 // response to heat // not recorded /// 0009408 // response to heat // inferred from sequence or structural similarity /// 0010033 // response to organic substance // not recorded /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from sequence or structural similarity /// 0019226 // transmission of nerve impulse // inferred from electronic annotation /// 0019226 // transmission of nerve impulse // not recorded /// 0019226 // transmission of nerve impulse // inferred from sequence or structural similarity /// 0019430 // removal of superoxide radicals // inferred from direct assay /// 0019430 // removal of superoxide radicals // not recorded /// 0019430 // removal of superoxide radicals // traceable author statement /// 0019430 // removal of superoxide radicals // inferred from electronic annotation /// 0019430 // removal of superoxide radicals // inferred from sequence or structural similarity /// 0031667 // response to nutrient levels // inferred from direct assay /// 0032287 // peripheral nervous system myelin maintenance // inferred from electronic annotation /// 0032287 // peripheral nervous system myelin maintenance // not recorded /// 0032287 // peripheral nervous system myelin maintenance // inferred from sequence or structural similarity /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from sequence or structural similarity /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0042493 // response to drug // inferred from sequence or structural similarity /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // not recorded /// 0042542 // response to hydrogen peroxide // inferred from sequence or structural similarity /// 0042554 // superoxide anion generation // inferred from electronic annotation /// 0042554 // superoxide anion generation // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043085 // positive regulation of catalytic activity // inferred from electronic annotation /// 0043085 // positive regulation of catalytic activity // not recorded /// 0043085 // positive regulation of catalytic activity // inferred from direct assay /// 0043085 // positive regulation of catalytic activity // inferred from sequence or structural similarity /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from sequence or structural similarity /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045471 // response to ethanol // not recorded /// 0045471 // response to ethanol // inferred from sequence or structural similarity /// 0045541 // negative regulation of cholesterol biosynthetic process // inferred from electronic annotation /// 0045541 // negative regulation of cholesterol biosynthetic process // not recorded /// 0045541 // negative regulation of cholesterol biosynthetic process // inferred from sequence or structural similarity /// 0045859 // regulation of protein kinase activity // inferred from electronic annotation /// 0045859 // regulation of protein kinase activity // not recorded /// 0045859 // regulation of protein kinase activity // inferred from sequence or structural similarity /// 0046688 // response to copper ion // inferred from mutant phenotype /// 0046716 // muscle cell homeostasis // inferred from electronic annotation /// 0046716 // muscle cell homeostasis // not recorded /// 0046716 // muscle cell homeostasis // inferred from sequence or structural similarity /// 0048678 // response to axon injury // inferred from electronic annotation /// 0048678 // response to axon injury // not recorded /// 0048678 // response to axon injury // inferred from sequence or structural similarity /// 0050665 // hydrogen peroxide biosynthetic process // inferred from direct assay /// 0050665 // hydrogen peroxide biosynthetic process // inferred from mutant phenotype /// 0050665 // hydrogen peroxide biosynthetic process // not recorded /// 0050665 // hydrogen peroxide biosynthetic process // inferred from electronic annotation /// 0050665 // hydrogen peroxide biosynthetic process // inferred from sequence or structural similarity /// 0051881 // regulation of mitochondrial membrane potential // inferred from electronic annotation /// 0051881 // regulation of mitochondrial membrane potential // not recorded /// 0051881 // regulation of mitochondrial membrane potential // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060047 // heart contraction // inferred from electronic annotation /// 0060047 // heart contraction // not recorded /// 0060047 // heart contraction // inferred from sequence or structural similarity /// 0060052 // neurofilament cytoskeleton organization // inferred from electronic annotation /// 0060052 // neurofilament cytoskeleton organization // not recorded /// 0060052 // neurofilament cytoskeleton organization // inferred from sequence or structural similarity /// 0060087 // relaxation of vascular smooth muscle // inferred from electronic annotation /// 0060087 // relaxation of vascular smooth muscle // not recorded /// 0060087 // relaxation of vascular smooth muscle // inferred from sequence or structural similarity /// 0060088 // auditory receptor cell stereocilium organization // inferred from electronic annotation /// 0060088 // auditory receptor cell stereocilium organization // not recorded /// 0060088 // auditory receptor cell stereocilium organization // inferred from sequence or structural similarity 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005777 // peroxisome // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // inferred from sequence or structural similarity /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0031410 // cytoplasmic vesicle // inferred from sequence or structural similarity /// 0032839 // dendrite cytoplasm // inferred from electronic annotation /// 0032839 // dendrite cytoplasm // not recorded /// 0032839 // dendrite cytoplasm // inferred from sequence or structural similarity /// 0043025 // neuronal cell body // inferred from direct assay /// 0043025 // neuronal cell body // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from sequence or structural similarity /// 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from sequence or structural similarity 0004784 // superoxide dismutase activity // inferred from direct assay /// 0004784 // superoxide dismutase activity // not recorded /// 0004784 // superoxide dismutase activity // inferred from electronic annotation /// 0004784 // superoxide dismutase activity // inferred from sequence or structural similarity /// 0005507 // copper ion binding // inferred from mutant phenotype /// 0005507 // copper ion binding // not recorded /// 0005507 // copper ion binding // traceable author statement /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0016209 // antioxidant activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0030346 // protein phosphatase 2B binding // inferred from electronic annotation /// 0030346 // protein phosphatase 2B binding // not recorded /// 0030346 // protein phosphatase 2B binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051087 // chaperone binding // inferred from mutant phenotype /// 0051087 // chaperone binding // not recorded /// 0051087 // chaperone binding // inferred from electronic annotation /// 0051087 // chaperone binding // inferred from sequence or structural similarity 1367642_at NM_053752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053752.1 /DB_XREF=gi:16758585 /GEN=Suclg1 /FEA=FLmRNA /CNT=49 /TID=Rn.3766.1 /TIER=FL+Stack /STK=31 /UG=Rn.3766 /LL=114597 /DEF=Rattus norvegicus succinate-CoA ligase, GDP-forming, alpha subunit (Suclg1), mRNA. /PROD=succinate-CoA ligase, GDP-forming, alphasubunit /FL=gb:NM_053752.1 gb:J03621.1 NM_053752 succinate-CoA ligase, alpha subunit Suclg1 114597 NM_053752 0006099 // tricarboxylic acid cycle // inferred from direct assay /// 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006104 // succinyl-CoA metabolic process // inferred from direct assay /// 0006105 // succinate metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0045244 // succinate-CoA ligase complex (GDP-forming) // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003878 // ATP citrate synthase activity // inferred from electronic annotation /// 0004775 // succinate-CoA ligase (ADP-forming) activity // inferred from direct assay /// 0004775 // succinate-CoA ligase (ADP-forming) activity // inferred from electronic annotation /// 0004776 // succinate-CoA ligase (GDP-forming) activity // inferred from direct assay /// 0004776 // succinate-CoA ligase (GDP-forming) activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019003 // GDP binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay 1367643_at NM_012783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012783.1 /DB_XREF=gi:7709991 /GEN=Bsg /FEA=FLmRNA /CNT=42 /TID=Rn.2269.1 /TIER=FL+Stack /STK=31 /UG=Rn.2269 /LL=25246 /DEF=Rattus norvegicus Basigin (Ox47 antigen or CE-9) (EMMPRIN in human) (neurothelin, HT7 or 5A11 in avian) (Bsg), mRNA. /PROD=basigin (Ox47 antigen or CE-9) (EMMPRIN inhuman) (neurothelin, HT7 or 5A11 in avian) /FL=gb:NM_012783.1 NM_012783 basigin Bsg 25246 NM_001109882 /// NM_012783 0007566 // embryo implantation // inferred from expression pattern /// 0042475 // odontogenesis of dentine-containing tooth // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0046689 // response to mercury ion // inferred from expression pattern /// 0046697 // decidualization // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern 0000139 // Golgi membrane // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0005537 // mannose binding // inferred from electronic annotation /// 0015129 // lactate transmembrane transporter activity // not recorded 1367644_at L01115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L01115.1 /DB_XREF=gi:202712 /FEA=FLmRNA /CNT=39 /TID=Rn.3313.1 /TIER=FL+Stack /STK=31 /UG=Rn.3313 /LL=25289 /UG_GENE=Adcy6 /DEF=Rattus norvegicus adenylyl cyclase type VI mRNA, complete cds. /PROD=adenylyl cyclase type VI /FL=gb:M96160.1 gb:L01115.1 gb:NM_012821.1 L01115 adenylate cyclase 6 Adcy6 25289 NM_012821 0006171 // cAMP biosynthetic process // inferred from direct assay /// 0006171 // cAMP biosynthetic process // inferred from mutant phenotype /// 0006171 // cAMP biosynthetic process // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0034199 // activation of protein kinase A activity // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031528 // microvillus membrane // inferred from direct assay /// 0042383 // sarcolemma // inferred from direct assay /// 0044424 // intracellular part // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004016 // adenylate cyclase activity // inferred from direct assay /// 0004016 // adenylate cyclase activity // inferred from mutant phenotype /// 0004016 // adenylate cyclase activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008294 // calcium- and calmodulin-responsive adenylate cyclase activity // inferred from direct assay /// 0008294 // calcium- and calmodulin-responsive adenylate cyclase activity // inferred from mutant phenotype /// 0016829 // lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367645_at NM_017152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017152.1 /DB_XREF=gi:8394214 /GEN=Rps17 /FEA=FLmRNA /CNT=37 /TID=Rn.6920.1 /TIER=FL+Stack /STK=31 /UG=Rn.6920 /LL=29286 /DEF=Rattus norvegicus ribosomal protein S17 (Rps17), mRNA. /PROD=ribosomal protein S17 /FL=gb:NM_017152.1 gb:K02933.1 NM_017152 ribosomal protein S17 Rps17 29286 NM_017152 0006364 // rRNA processing // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0034101 // erythrocyte homeostasis // not recorded /// 0042274 // ribosomal small subunit biogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1367646_at NM_022597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022597.1 /DB_XREF=gi:12018261 /GEN=Ctsb /FEA=FLmRNA /CNT=52 /TID=Rn.6171.1 /TIER=FL+Stack /STK=31 /UG=Rn.6171 /LL=64529 /DEF=Rattus norvegicus cathepsin B (Ctsb), mRNA. /PROD=cathepsin B /FL=gb:NM_022597.1 NM_022597 cathepsin B Ctsb 64529 NM_022597 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from expression pattern /// 0006508 // proteolysis // inferred from mutant phenotype /// 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006914 // autophagy // inferred from expression pattern /// 0006950 // response to stress // inferred from expression pattern /// 0007519 // skeletal muscle tissue development // inferred from expression pattern /// 0009611 // response to wounding // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014075 // response to amine stimulus // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0060548 // negative regulation of cell death // inferred from mutant phenotype /// 0070670 // response to interleukin-4 // inferred from expression pattern 0005576 // extracellular region // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // traceable author statement /// 0005764 // lysosome // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0042383 // sarcolemma // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004175 // endopeptidase activity // inferred from direct assay /// 0004175 // endopeptidase activity // inferred from mutant phenotype /// 0004197 // cysteine-type endopeptidase activity // inferred from direct assay /// 0004197 // cysteine-type endopeptidase activity // not recorded /// 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030984 // kininogen binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction /// 0042277 // peptide binding // inferred from direct assay 1367647_at NM_022519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022519.1 /DB_XREF=gi:11968099 /GEN=Serpina1 /FEA=FLmRNA /CNT=34 /TID=Rn.1419.1 /TIER=FL+Stack /STK=31 /UG=Rn.1419 /LL=24648 /DEF=Rattus norvegicus serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 (Serpina1), mRNA. /PROD=serine protease inhibitor alpha 1 /FL=gb:NM_022519.1 gb:M32247.1 NM_022519 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 Serpina1 24648 NM_022519 0001666 // response to hypoxia // inferred from expression pattern /// 0006953 // acute-phase response // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010288 // response to lead ion // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033986 // response to methanol // inferred from direct assay /// 0034014 // response to triglyceride // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0034097 // response to cytokine stimulus // not recorded /// 0043434 // response to peptide hormone stimulus // not recorded /// 0046687 // response to chromate // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // not recorded 0002020 // protease binding // inferred from electronic annotation /// 0002020 // protease binding // not recorded /// 0004866 // endopeptidase inhibitor activity // inferred from direct assay /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1367648_at NM_013122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013122.1 /DB_XREF=gi:6981081 /GEN=Igfbp2 /FEA=FLmRNA /CNT=47 /TID=Rn.6813.1 /TIER=FL+Stack /STK=31 /UG=Rn.6813 /LL=25662 /DEF=Rattus norvegicus Insulin-like growth factor binding protein 2 (Igfbp2), mRNA. /PROD=insulin-like growth factor binding protein 2 /FL=gb:NM_013122.1 gb:M31672.1 gb:J04486.1 NM_013122 insulin-like growth factor binding protein 2 Igfbp2 25662 NM_013122 0001558 // regulation of cell growth // inferred from electronic annotation /// 0006950 // response to stress // inferred from expression pattern /// 0007165 // signal transduction // inferred from expression pattern /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0010226 // response to lithium ion // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0040008 // regulation of growth // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0043567 // regulation of insulin-like growth factor receptor signaling pathway // inferred by curator /// 0043567 // regulation of insulin-like growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from mutant phenotype /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from direct assay 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005520 // insulin-like growth factor binding // not recorded /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation /// 0031994 // insulin-like growth factor I binding // inferred from direct assay /// 0031994 // insulin-like growth factor I binding // inferred from mutant phenotype /// 0031994 // insulin-like growth factor I binding // not recorded /// 0031994 // insulin-like growth factor I binding // inferred from electronic annotation /// 0031995 // insulin-like growth factor II binding // inferred from direct assay /// 0031995 // insulin-like growth factor II binding // inferred from mutant phenotype /// 0031995 // insulin-like growth factor II binding // inferred from physical interaction 1367649_at NM_130829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130829.1 /DB_XREF=gi:18677764 /GEN=Palm /FEA=FLmRNA /CNT=32 /TID=Rn.18947.1 /TIER=FL+Stack /STK=31 /UG=Rn.18947 /DEF=Rattus norvegicus paralemmin (Palm), mRNA. /PROD=paralemmin /FL=gb:NM_130829.1 gb:AB058889.1 NM_130829 paralemmin Palm 170673 NM_130829 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0007010 // cytoskeleton organization // not recorded /// 0007194 // negative regulation of adenylate cyclase activity // inferred from electronic annotation /// 0007194 // negative regulation of adenylate cyclase activity // not recorded /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0030818 // negative regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0030818 // negative regulation of cAMP biosynthetic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009898 // internal side of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0031750 // D3 dopamine receptor binding // inferred from electronic annotation /// 0031750 // D3 dopamine receptor binding // not recorded 1367650_at NM_053582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053582.1 /DB_XREF=gi:16758353 /GEN=gis5 /FEA=FLmRNA /CNT=39 /TID=Rn.1256.1 /TIER=FL+Stack /STK=30 /UG=Rn.1256 /LL=94174 /DEF=Rattus norvegicus glucocorticoid-inducible protein (gis5), mRNA. /PROD=glucocorticoid-inducible protein /FL=gb:AB050717.1 gb:NM_053582.1 NM_053582 tubulointerstitial nephritis antigen-like 1 Tinagl1 94174 NM_053582 0006508 // proteolysis // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0031012 // extracellular matrix // not recorded 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0030247 // polysaccharide binding // inferred from electronic annotation /// 0043236 // laminin binding // inferred from electronic annotation /// 0043236 // laminin binding // not recorded 1367651_at NM_134334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134334.1 /DB_XREF=gi:19705440 /GEN=Ctsd /FEA=FLmRNA /CNT=45 /TID=Rn.11085.1 /TIER=FL+Stack /STK=30 /UG=Rn.11085 /LL=171293 /DEF=Rattus norvegicus cathepsin D (Ctsd), mRNA. /PROD=cathepsin D /FL=gb:NM_134334.1 NM_134334 cathepsin D Ctsd 171293 NM_134334 0000045 // autophagic vacuole assembly // not recorded /// 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006914 // autophagy // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // not recorded 0005615 // extracellular space // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded /// 0042470 // melanosome // inferred from electronic annotation 0004175 // endopeptidase activity // inferred from direct assay /// 0004175 // endopeptidase activity // inferred from mutant phenotype /// 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay 1367652_at AI713966 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI713966 /DB_XREF=gi:5017766 /DB_XREF=UI-R-AB1-yt-h-04-0-UI.s1 /CLONE=UI-R-AB1-yt-h-04-0-UI /FEA=FLmRNA /CNT=56 /TID=Rn.26369.1 /TIER=Stack /STK=7 /UG=Rn.26369 /LL=24484 /UG_GENE=Igfbp3 /UG_TITLE=Insulin-like growth factor-binding protein (IGF-BP3) /FL=gb:M33300.1 gb:M31837.1 gb:NM_012588.1 AI713966 insulin-like growth factor binding protein 3 Igfbp3 24484 NM_012588 0001558 // regulation of cell growth // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0001933 // negative regulation of protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0014912 // negative regulation of smooth muscle cell migration // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from sequence or structural similarity /// 0045663 // positive regulation of myoblast differentiation // not recorded /// 0045663 // positive regulation of myoblast differentiation // inferred from sequence or structural similarity /// 0048662 // negative regulation of smooth muscle cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0016942 // insulin-like growth factor binding protein complex // inferred from mutant phenotype /// 0042567 // insulin-like growth factor ternary complex // inferred from mutant phenotype /// 0042568 // insulin-like growth factor binary complex // inferred from mutant phenotype 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0005520 // insulin-like growth factor binding // not recorded /// 0005520 // insulin-like growth factor binding // traceable author statement /// 0008160 // protein tyrosine phosphatase activator activity // not recorded /// 0008160 // protein tyrosine phosphatase activator activity // inferred from sequence or structural similarity /// 0019838 // growth factor binding // inferred from electronic annotation /// 0031994 // insulin-like growth factor I binding // inferred from physical interaction /// 0031994 // insulin-like growth factor I binding // not recorded /// 0031995 // insulin-like growth factor II binding // inferred from physical interaction 1367653_a_at NM_033235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_033235.1 /DB_XREF=gi:15100178 /GEN=Mdhl /FEA=FLmRNA /CNT=42 /TID=Rn.1504.1 /TIER=FL+Stack /STK=29 /UG=Rn.1504 /LL=24551 /DEF=Rattus norvegicus Malate dehydrogenase-like enzyme (Mdhl), mRNA. /PROD=malate dehydrogenase-like enzyme /FL=gb:AF093773.1 gb:NM_033235.1 NM_033235 malate dehydrogenase 1, NAD (soluble) Mdh1 24551 NM_033235 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006096 // glycolysis // inferred from electronic annotation /// 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006107 // oxaloacetate metabolic process // inferred from direct assay /// 0006108 // malate metabolic process // inferred from direct assay /// 0006108 // malate metabolic process // inferred from electronic annotation /// 0006734 // NADH metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0019674 // NAD metabolic process // inferred from direct assay /// 0044262 // cellular carbohydrate metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016615 // malate dehydrogenase activity // inferred from direct assay /// 0016615 // malate dehydrogenase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0030060 // L-malate dehydrogenase activity // inferred from direct assay /// 0030060 // L-malate dehydrogenase activity // not recorded /// 0030060 // L-malate dehydrogenase activity // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from direct assay 1367654_at NM_031819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031819.1 /DB_XREF=gi:13929167 /GEN=Fat /FEA=FLmRNA /CNT=38 /TID=Rn.8633.1 /TIER=FL+Stack /STK=29 /UG=Rn.8633 /LL=83720 /DEF=Rattus norvegicus FAT tumor suppressor (Drosophila) homolog (Fat), mRNA. /PROD=FAT tumor suppressor (Drosophila) homolog /FL=gb:NM_031819.1 gb:AF100960.1 NM_031819 FAT tumor suppressor homolog 1 (Drosophila) Fat1 83720 NM_031819 0007015 // actin filament organization // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007163 // establishment or maintenance of cell polarity // not recorded /// 0016337 // cell-cell adhesion // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030054 // cell junction // not recorded /// 0030175 // filopodium // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367655_at NM_021261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021261.1 /DB_XREF=gi:10863918 /GEN=Tmsb10 /FEA=FLmRNA /CNT=37 /TID=Rn.5983.1 /TIER=FL+Stack /STK=28 /UG=Rn.5983 /LL=50665 /DEF=Rattus norvegicus thymosin, beta 10 (Tmsb10), mRNA. /PROD=thymosin beta-10 /FL=gb:NM_021261.1 gb:M58405.1 gb:M58404.1 gb:M17698.1 NM_021261 thymosin, beta 10 Tmsb10 50665 NM_021261 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0007286 // spermatid development // traceable author statement /// 0030036 // actin cytoskeleton organization // traceable author statement /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0042989 // sequestering of actin monomers // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0003785 // actin monomer binding // traceable author statement 1367656_at NM_053532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053532.1 /DB_XREF=gi:16758297 /GEN=Psmb7 /FEA=FLmRNA /CNT=44 /TID=Rn.3846.1 /TIER=FL+Stack /STK=28 /UG=Rn.3846 /LL=85492 /DEF=Rattus norvegicus proteasome (prosome, macropain) subunit, beta type, 7 (Psmb7), mRNA. /PROD=proteasome (prosome, macropain) subunit, betatype, 7 /FL=gb:AF285103.1 gb:NM_053532.1 NM_053532 proteasome (prosome, macropain) subunit, beta type 7 Psmb7 85492 NM_053532 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005839 // proteasome core complex // inferred from electronic annotation 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1367657_at NM_017258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017258.1 /DB_XREF=gi:12025533 /GEN=Btg1 /FEA=FLmRNA /CNT=34 /TID=Rn.1000.1 /TIER=FL+Stack /STK=28 /UG=Rn.1000 /LL=29618 /DEF=Rattus norvegicus B-cell translocation gene 1, anti-proliferative (Btg1), mRNA. /PROD=B-cell translocation gene 1, anti-proliferative /FL=gb:L26268.1 gb:NM_017258.1 NM_017258 B-cell translocation gene 1, anti-proliferative Btg1 29618 NM_017258 0006479 // protein methylation // inferred from electronic annotation /// 0006479 // protein methylation // not recorded /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0007283 // spermatogenesis // inferred from expression pattern /// 0007286 // spermatid development // non-traceable author statement /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from sequence or structural similarity /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045603 // positive regulation of endothelial cell differentiation // not recorded /// 0045603 // positive regulation of endothelial cell differentiation // inferred from sequence or structural similarity /// 0045603 // positive regulation of endothelial cell differentiation // inferred from electronic annotation /// 0045663 // positive regulation of myoblast differentiation // inferred from electronic annotation /// 0045663 // positive regulation of myoblast differentiation // not recorded /// 0045766 // positive regulation of angiogenesis // not recorded /// 0045766 // positive regulation of angiogenesis // inferred from sequence or structural similarity /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from sequence or structural similarity /// 0019899 // enzyme binding // inferred from electronic annotation 1367658_at NM_021676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021676.1 /DB_XREF=gi:11067398 /GEN=Shank3 /FEA=FLmRNA /CNT=32 /TID=Rn.42876.1 /TIER=FL+Stack /STK=28 /UG=Rn.42876 /LL=59312 /DEF=Rattus norvegicus SH3ankyrin domain gene 3 (Shank3), mRNA. /PROD=Shank postsynaptic density protein 3a /FL=gb:NM_021676.1 gb:AF133301.1 NM_021676 SH3 and multiple ankyrin repeat domains 3 Shank3 59312 NM_021676 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000165 // MAPKKK cascade // not recorded /// 0001838 // embryonic epithelial tube formation // inferred from electronic annotation /// 0001838 // embryonic epithelial tube formation // not recorded /// 0051259 // protein oligomerization // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from direct assay /// 0017124 // SH3 domain binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0043621 // protein self-association // inferred from direct assay 1367659_s_at NM_017306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017306.1 /DB_XREF=gi:8393242 /GEN=DCI /FEA=FLmRNA /CNT=34 /TID=Rn.4005.1 /TIER=FL+Stack /STK=28 /UG=Rn.4005 /LL=29740 /DEF=Rattus norvegicus dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenyme A isomerase) (DCI), mRNA. /PROD=dodecenoyl-Coenzyme A delta isomerase (3,2trans-enoyl-Coenyme A isomerase) /FL=gb:NM_017306.1 gb:M61112.1 NM_017306 dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenzyme A isomerase) Dci 29740 NM_017306 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // not recorded /// 0006635 // fatty acid beta-oxidation // traceable author statement /// 0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004165 // dodecenoyl-CoA delta-isomerase activity // inferred from direct assay /// 0004165 // dodecenoyl-CoA delta-isomerase activity // not recorded /// 0004165 // dodecenoyl-CoA delta-isomerase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay 1367660_at NM_024162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024162.1 /DB_XREF=gi:13162362 /GEN=Fabp3 /FEA=FLmRNA /CNT=32 /TID=Rn.32566.1 /TIER=FL+Stack /STK=28 /UG=Rn.32566 /LL=79131 /DEF=Rattus norvegicus Fatty acid binding protein 3, muscle and heart (Fabp3), mRNA. /PROD=heart fatty acid binding protein /FL=gb:NM_024162.1 gb:M18034.1 gb:J02773.1 NM_024162 fatty acid binding protein 3, muscle and heart Fabp3 79131 NM_024162 0006631 // fatty acid metabolic process // inferred from expression pattern /// 0006635 // fatty acid beta-oxidation // non-traceable author statement /// 0006656 // phosphatidylcholine biosynthetic process // inferred from electronic annotation /// 0006656 // phosphatidylcholine biosynthetic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0015909 // long-chain fatty acid transport // inferred from direct assay /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0070542 // response to fatty acid // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0016528 // sarcoplasm // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0005324 // long-chain fatty acid transporter activity // inferred from physical interaction /// 0005488 // binding // inferred from electronic annotation /// 0005504 // fatty acid binding // inferred from physical interaction /// 0005504 // fatty acid binding // traceable author statement /// 0008289 // lipid binding // inferred from electronic annotation /// 0050543 // icosatetraenoic acid binding // inferred from physical interaction 1367661_at AF140232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF140232.1 /DB_XREF=gi:13506724 /GEN=S100A6 /FEA=FLmRNA /CNT=35 /TID=Rn.3233.1 /TIER=FL+Stack /STK=27 /UG=Rn.3233 /LL=85247 /DEF=Rattus norvegicus calcium binding protein (S100A6) mRNA, complete cds. /PROD=calcium binding protein /FL=gb:NM_053485.1 gb:AF140232.1 AF140232 S100 calcium binding protein A6 S100a6 85247 NM_053485 0001726 // ruffle // inferred from electronic annotation /// 0001726 // ruffle // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031234 // extrinsic to internal side of plasma membrane // not recorded /// 0031234 // extrinsic to internal side of plasma membrane // inferred from sequence or structural similarity /// 0031234 // extrinsic to internal side of plasma membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005523 // tropomyosin binding // inferred from electronic annotation /// 0005523 // tropomyosin binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0015075 // ion transmembrane transporter activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048154 // S100 beta binding // inferred from electronic annotation /// 0048154 // S100 beta binding // not recorded /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded 1367662_at NM_031682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031682.1 /DB_XREF=gi:13994224 /GEN=Hsd17b10 /FEA=FLmRNA /CNT=35 /TID=Rn.2700.1 /TIER=FL+Stack /STK=27 /UG=Rn.2700 /LL=63864 /DEF=Rattus norvegicus hydroxysteroid (17-beta) dehydrogenase 10 (Hsd17b10), mRNA. /PROD=hydroxyacyl-Coenzyme A dehydrogenase, type II /FL=gb:AF069770.1 gb:NM_031682.1 gb:AF049878.1 NM_031682 hydroxysteroid (17-beta) dehydrogenase 10 Hsd17b10 63864 NM_031682 0007569 // cell aging // inferred from expression pattern /// 0008033 // tRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0033327 // Leydig cell differentiation // inferred from expression pattern /// 0051289 // protein homotetramerization // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded 0001540 // beta-amyloid binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0004303 // estradiol 17-beta-dehydrogenase activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005496 // steroid binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0018454 // acetoacetyl-CoA reductase activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from direct assay /// 0047015 // 3-hydroxy-2-methylbutyryl-CoA dehydrogenase activity // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from direct assay 1367663_at NM_017264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017264.1 /DB_XREF=gi:8394087 /GEN=Psme1 /FEA=FLmRNA /CNT=37 /TID=Rn.2742.1 /TIER=FL+Stack /STK=27 /UG=Rn.2742 /LL=29630 /DEF=Rattus norvegicus protease (prosome, macropain) 28 subunit, alpha (Psme1), mRNA. /PROD=protease (prosome, macropain) 28 subunit, alpha /FL=gb:NM_017264.1 NM_017264 proteasome (prosome, macropain) activator subunit 1 Psme1 29630 NM_017264 0010950 // positive regulation of endopeptidase activity // not recorded /// 0019884 // antigen processing and presentation of exogenous antigen // not recorded /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation /// 0008537 // proteasome activator complex // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0061133 // endopeptidase activator activity // not recorded 1367664_at NM_013220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013220.1 /DB_XREF=gi:7106247 /GEN=Alrp /FEA=FLmRNA /CNT=33 /TID=Rn.3789.1 /TIER=FL+Stack /STK=27 /UG=Rn.3789 /LL=27064 /DEF=Rattus norvegicus cardiac ankyrin repeat protein (Alrp), mRNA. /PROD=cardiac ankyrin repeat protein /FL=gb:L81174.1 gb:U50736.1 gb:NM_013220.1 NM_013220 ankyrin repeat domain 1 (cardiac muscle) Ankrd1 27064 NM_013220 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // traceable author statement 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0031674 // I band // inferred from electronic annotation /// 0031674 // I band // not recorded 0003712 // transcription cofactor activity // traceable author statement /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367665_at L81174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L81174.1 /DB_XREF=gi:18654143 /GEN=Carp /FEA=FLmRNA /CNT=33 /TID=Rn.3789.1 /TIER=FL /STK=1 /UG=Rn.3789 /LL=27064 /DEF=Rattus norvegicus ankyrin-repeat protein (Carp) mRNA, complete cds. /PROD=ankyrin-repeat protein /FL=gb:L81174.1 gb:U50736.1 gb:NM_013220.1 L81174 ankyrin repeat domain 1 (cardiac muscle) Ankrd1 27064 NM_013220 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // traceable author statement 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0031674 // I band // inferred from electronic annotation /// 0031674 // I band // not recorded 0003712 // transcription cofactor activity // traceable author statement /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367666_at NM_080896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080896.1 /DB_XREF=gi:18266699 /GEN=Hnrnph1 /FEA=FLmRNA /CNT=42 /TID=Rn.23677.1 /TIER=FL+Stack /STK=26 /UG=Rn.23677 /DEF=Rattus norvegicus heterogeneous nuclear ribonucleoprotein H1 (Hnrnph1), mRNA. /PROD=heterogeneous nuclear ribonucleoprotein H1 /FL=gb:NM_080896.1 gb:AF367468.1 NM_080896 heterogeneous nuclear ribonucleoprotein H1 Hnrph1 140931 NM_080896 0006396 // RNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0043484 // regulation of RNA splicing // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred from electronic annotation 1367667_at NM_031840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031840.1 /DB_XREF=gi:13929205 /GEN=Fdps /FEA=FLmRNA /CNT=41 /TID=Rn.2622.1 /TIER=FL+Stack /STK=26 /UG=Rn.2622 /LL=83791 /DEF=Rattus norvegicus Farnesyl diphosphate synthase (Fdps), mRNA. /PROD=testis-specific farnesyl pyrophosphatesynthetase /FL=gb:M17300.1 gb:M34477.1 gb:NM_031840.1 NM_031840 farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase) Fdps 83791 NM_031840 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0008299 // isoprenoid biosynthetic process // inferred from direct assay /// 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation /// 0008584 // male gonad development // inferred from expression pattern /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045337 // farnesyl diphosphate biosynthetic process // inferred from direct assay /// 0045542 // positive regulation of cholesterol biosynthetic process // inferred from mutant phenotype /// 0061051 // positive regulation of cell growth involved in cardiac muscle cell development // inferred from mutant phenotype /// 0070723 // response to cholesterol // inferred from expression pattern /// 0071398 // cellular response to fatty acid // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005777 // peroxisome // inferred from direct assay 0004161 // dimethylallyltranstransferase activity // inferred from electronic annotation /// 0004311 // farnesyltranstransferase activity // inferred from genetic interaction /// 0004337 // geranyltranstransferase activity // inferred from direct assay /// 0004337 // geranyltranstransferase activity // traceable author statement /// 0004337 // geranyltranstransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367668_a_at NM_031841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031841.1 /DB_XREF=gi:13929207 /GEN=Scd2 /FEA=FLmRNA /CNT=71 /TID=Rn.2627.1 /TIER=FL+Stack /STK=26 /UG=Rn.2627 /LL=83792 /DEF=Rattus norvegicus stearoyl-Coenzyme A desaturase 2 (Scd2), mRNA. /PROD=stearoyl-Coenzyme A desaturase 2 /FL=gb:AB032243.1 gb:NM_031841.1 NM_031841 stearoyl-CoA desaturase (delta-9-desaturase) Scd 83792 NM_031841 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // traceable author statement /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0042552 // myelination // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded 0004768 // stearoyl-CoA 9-desaturase activity // inferred from direct assay /// 0004768 // stearoyl-CoA 9-desaturase activity // traceable author statement /// 0004768 // stearoyl-CoA 9-desaturase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016717 // oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water // inferred from electronic annotation 1367669_a_at AI233190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233190 /DB_XREF=gi:3817070 /DB_XREF=EST229878 /CLONE=RKIDC01 /FEA=EST /CNT=23 /TID=Rn.883.2 /TIER=Stack /STK=19 /UG=Rn.883 /LL=64862 /UG_GENE=MPL3 /UG_TITLE=microtubule-associated proteins 1A1B light chain 3 AI233190 microtubule-associated protein 1 light chain 3 beta Map1lc3b 64862 NM_022867 0006914 // autophagy // inferred from electronic annotation /// 0032092 // positive regulation of protein binding // inferred from direct assay 0000421 // autophagic vacuole membrane // inferred from direct assay /// 0000421 // autophagic vacuole membrane // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred from direct assay /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // inferred from direct assay /// 0015631 // tubulin binding // inferred from direct assay /// 0019904 // protein domain specific binding // inferred from physical interaction 1367670_at NM_017005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017005.1 /DB_XREF=gi:8393357 /GEN=Fh /FEA=FLmRNA /CNT=32 /TID=Rn.29782.1 /TIER=FL+Stack /STK=26 /UG=Rn.29782 /LL=24368 /DEF=Rattus norvegicus Fumarate hydratase (Fh), mRNA. /PROD=fumarate hydratase /FL=gb:J04473.1 gb:NM_017005.1 NM_017005 fumarate hydratase 1 Fh1 24368 NM_017005 0006099 // tricarboxylic acid cycle // inferred from direct assay /// 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006106 // fumarate metabolic process // inferred from direct assay /// 0006106 // fumarate metabolic process // traceable author statement /// 0006106 // fumarate metabolic process // inferred from electronic annotation /// 0006108 // malate metabolic process // inferred from direct assay /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded /// 0045239 // tricarboxylic acid cycle enzyme complex // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004333 // fumarate hydratase activity // inferred from direct assay /// 0004333 // fumarate hydratase activity // inferred from mutant phenotype /// 0004333 // fumarate hydratase activity // not recorded /// 0004333 // fumarate hydratase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation 1367671_at NM_022381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022381.1 /DB_XREF=gi:11693141 /GEN=Pcna /FEA=FLmRNA /CNT=45 /TID=Rn.223.1 /TIER=FL+Stack /STK=25 /UG=Rn.223 /LL=25737 /DEF=Rattus norvegicus Proliferating cell nuclear antigen (Pcna), mRNA. /PROD=proliferating cell nuclear antigen /FL=gb:NM_022381.1 NM_022381 proliferating cell nuclear antigen Pcna 25737 NM_022381 0006260 // DNA replication // inferred from electronic annotation /// 0006275 // regulation of DNA replication // inferred from electronic annotation /// 0006287 // base-excision repair, gap-filling // inferred from electronic annotation /// 0006287 // base-excision repair, gap-filling // not recorded /// 0006297 // nucleotide-excision repair, DNA gap filling // not recorded /// 0006298 // mismatch repair // inferred from electronic annotation /// 0006298 // mismatch repair // not recorded /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0007507 // heart development // inferred from expression pattern /// 0019985 // translesion synthesis // not recorded /// 0019985 // translesion synthesis // inferred from sequence or structural similarity /// 0033993 // response to lipid // inferred from direct assay /// 0046686 // response to cadmium ion // inferred from expression pattern 0000307 // cyclin-dependent protein kinase holoenzyme complex // inferred from electronic annotation /// 0000307 // cyclin-dependent protein kinase holoenzyme complex // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005652 // nuclear lamina // inferred from electronic annotation /// 0005652 // nuclear lamina // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005657 // replication fork // inferred from electronic annotation /// 0005657 // replication fork // not recorded /// 0043596 // nuclear replication fork // not recorded /// 0043626 // PCNA complex // inferred from electronic annotation /// 0070557 // PCNA-p21 complex // not recorded /// 0070557 // PCNA-p21 complex // inferred from sequence or structural similarity 0000701 // purine-specific mismatch base pair DNA N-glycosylase activity // inferred from electronic annotation /// 0000701 // purine-specific mismatch base pair DNA N-glycosylase activity // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030337 // DNA polymerase processivity factor activity // inferred from electronic annotation /// 0032139 // dinucleotide insertion or deletion binding // inferred from electronic annotation /// 0032139 // dinucleotide insertion or deletion binding // not recorded /// 0032405 // MutLalpha complex binding // inferred from electronic annotation /// 0032405 // MutLalpha complex binding // not recorded 1367672_at NM_024392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024392.1 /DB_XREF=gi:13242302 /GEN=Hsd17b4 /FEA=FLmRNA /CNT=39 /TID=Rn.2082.1 /TIER=FL+Stack /STK=25 /UG=Rn.2082 /LL=79244 /DEF=Rattus norvegicus peroxisomal multifunctional enzyme type II (Hsd17b4), mRNA. /PROD=peroxisomal multifunctional enzyme type II /FL=gb:U37486.1 gb:NM_024392.1 NM_024392 hydroxysteroid (17-beta) dehydrogenase 4 Hsd17b4 79244 NM_024392 0000038 // very long-chain fatty acid metabolic process // inferred from electronic annotation /// 0000038 // very long-chain fatty acid metabolic process // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // non-traceable author statement /// 0033540 // fatty acid beta-oxidation using acyl-CoA oxidase // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060009 // Sertoli cell development // inferred from electronic annotation /// 0060009 // Sertoli cell development // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // not recorded /// 0005777 // peroxisome // inferred from electronic annotation /// 0005782 // peroxisomal matrix // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // not recorded /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0030283 // 3(or 17)beta-hydroxysteroid dehydrogenase activity // traceable author statement /// 0032934 // sterol binding // inferred from electronic annotation /// 0033989 // 3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA hydratase activity // not recorded /// 0033989 // 3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA hydratase activity // inferred from electronic annotation 1367673_at NM_080892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080892.1 /DB_XREF=gi:18266691 /GEN=Selenbp2 /FEA=FLmRNA /CNT=30 /TID=Rn.16617.1 /TIER=FL+Stack /STK=25 /UG=Rn.16617 /DEF=Rattus norvegicus selenium binding protein 2 (Selenbp2), mRNA. /PROD=selenium binding protein 2 /FL=gb:NM_080892.1 gb:AB036799.1 NM_080892 selenium binding protein 1 Selenbp1 140927 NM_080892 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008430 // selenium binding // inferred from electronic annotation 1367674_at NM_053742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053742.1 /DB_XREF=gi:16758567 /GEN=Pitpnb /FEA=FLmRNA /CNT=38 /TID=Rn.2399.1 /TIER=FL+Stack /STK=25 /UG=Rn.2399 /LL=114561 /DEF=Rattus norvegicus phosphotidylinositol transfer protein, beta (Pitpnb), mRNA. /PROD=phosphotidylinositol transfer protein, beta /FL=gb:D21132.1 gb:NM_053742.1 NM_053742 phosphatidylinositol transfer protein, beta Pitpnb 114561 NM_053742 0001701 // in utero embryonic development // not recorded /// 0006810 // transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded 0008289 // lipid binding // inferred from electronic annotation /// 0008526 // phosphatidylinositol transporter activity // inferred from mutant phenotype 1367675_at NM_031145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031145.1 /DB_XREF=gi:13592134 /GEN=Sip2-28 /FEA=FLmRNA /CNT=31 /TID=Rn.833.1 /TIER=FL+Stack /STK=25 /UG=Rn.833 /LL=81823 /DEF=Rattus norvegicus calcium- and integrin-binding protein (Sip2-28), mRNA. /PROD=calcium- and integrin-binding protein /FL=gb:NM_031145.1 gb:AF136585.1 NM_031145 calcium and integrin binding 1 (calmyrin) Cib1 81823 NM_031145 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from sequence or structural similarity /// 0006915 // apoptosis // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from sequence or structural similarity /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005654 // nucleoplasm // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030175 // filopodium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1367676_at NM_017187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017187.1 /DB_XREF=gi:8393535 /GEN=Hmgb2 /FEA=FLmRNA /CNT=44 /TID=Rn.2874.1 /TIER=FL+Stack /STK=25 /UG=Rn.2874 /LL=29395 /DEF=Rattus norvegicus high mobility group box 2 (Hmgb2), mRNA. /PROD=high mobility group box 2 /FL=gb:D84418.1 gb:NM_017187.1 NM_017187 high mobility group box 2 Hmgb2 29395 NM_017187 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0006288 // base-excision repair, DNA ligation // not recorded /// 0006288 // base-excision repair, DNA ligation // inferred from sequence or structural similarity /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from expression pattern /// 0007283 // spermatogenesis // not recorded /// 0007289 // spermatid nucleus differentiation // not recorded /// 0007399 // nervous system development // inferred from direct assay /// 0008584 // male gonad development // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0032075 // positive regulation of nuclease activity // not recorded /// 0043388 // positive regulation of DNA binding // not recorded /// 0045648 // positive regulation of erythrocyte differentiation // not recorded /// 0045654 // positive regulation of megakaryocyte differentiation // not recorded /// 0045941 // positive regulation of transcription // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048545 // response to steroid hormone stimulus // not recorded /// 0051054 // positive regulation of DNA metabolic process // inferred from mutant phenotype /// 0060326 // cell chemotaxis // not recorded /// 0071222 // cellular response to lipopolysaccharide // not recorded 0000793 // condensed chromosome // not recorded /// 0000793 // condensed chromosome // inferred from sequence or structural similarity /// 0005615 // extracellular space // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0043234 // protein complex // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // not recorded /// 0003690 // double-stranded DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008289 // lipid binding // inferred from direct assay /// 0008301 // DNA bending activity // not recorded /// 0008301 // DNA bending activity // inferred from sequence or structural similarity /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016565 // general transcriptional repressor activity // not recorded /// 0019904 // protein domain specific binding // not recorded /// 0031493 // nucleosomal histone binding // inferred from direct assay /// 0042056 // chemoattractant activity // not recorded /// 0050786 // RAGE receptor binding // not recorded 1367677_at NM_053610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053610.1 /DB_XREF=gi:16758403 /GEN=Prdx6 /FEA=FLmRNA /CNT=30 /TID=Rn.2944.1 /TIER=FL+Stack /STK=25 /UG=Rn.2944 /LL=113898 /DEF=Rattus norvegicus peroxiredoxin 6 (Prdx6), mRNA. /PROD=peroxiredoxin 6 /FL=gb:AF110732.1 gb:NM_053610.1 NM_053610 peroxiredoxin 5 Prdx5 113898 NM_053610 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0034614 // cellular response to reactive oxygen species // inferred from electronic annotation /// 0034614 // cellular response to reactive oxygen species // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // not recorded /// 0005777 // peroxisome // inferred from electronic annotation /// 0044445 // cytosolic part // inferred from electronic annotation /// 0044445 // cytosolic part // not recorded 0004601 // peroxidase activity // inferred from electronic annotation /// 0004601 // peroxidase activity // not recorded /// 0016209 // antioxidant activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0043027 // caspase inhibitor activity // inferred from electronic annotation /// 0043027 // caspase inhibitor activity // not recorded /// 0051920 // peroxiredoxin activity // inferred from electronic annotation 1367678_at NM_130428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130428.1 /DB_XREF=gi:18426857 /GEN=Sdha /FEA=FLmRNA /CNT=39 /TID=Rn.3593.1 /TIER=FL+Stack /STK=24 /UG=Rn.3593 /DEF=Rattus norvegicus succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (Sdha), mRNA. /PROD=succinate dehydrogenase complex, subunit A,flavoprotein (Fp) /FL=gb:NM_130428.1 gb:AB072907.1 NM_130428 succinate dehydrogenase complex, subunit A, flavoprotein (Fp) Sdha 157074 NM_130428 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006105 // succinate metabolic process // inferred from mutant phenotype /// 0006105 // succinate metabolic process // not recorded /// 0006105 // succinate metabolic process // inferred from sequence or structural similarity /// 0006105 // succinate metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // inferred from mutant phenotype /// 0022904 // respiratory electron transport chain // not recorded /// 0022904 // respiratory electron transport chain // inferred from sequence or structural similarity /// 0022904 // respiratory electron transport chain // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005749 // mitochondrial respiratory chain complex II // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation 0000104 // succinate dehydrogenase activity // not recorded /// 0000104 // succinate dehydrogenase activity // inferred from sequence or structural similarity /// 0000104 // succinate dehydrogenase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008177 // succinate dehydrogenase (ubiquinone) activity // inferred from mutant phenotype /// 0008177 // succinate dehydrogenase (ubiquinone) activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1367679_at NM_013069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013069.1 /DB_XREF=gi:6978636 /GEN=Cd74 /FEA=FLmRNA /CNT=30 /TID=Rn.33804.1 /TIER=FL+Stack /STK=24 /UG=Rn.33804 /LL=25599 /DEF=Rattus norvegicus CD74 antigen (invariant polpypeptide of major histocompatibility class II antigen-associated) (Cd74), mRNA. /PROD=CD74 antigen (invariant polpypeptide of majorhistocompatibility class II antigen-associated) /FL=gb:NM_013069.1 NM_013069 Cd74 molecule, major histocompatibility complex, class II invariant chain Cd74 25599 NM_013069 0000187 // activation of MAPK activity // inferred from direct assay /// 0001516 // prostaglandin biosynthetic process // not recorded /// 0001516 // prostaglandin biosynthetic process // inferred from sequence or structural similarity /// 0001516 // prostaglandin biosynthetic process // inferred from electronic annotation /// 0001961 // positive regulation of cytokine-mediated signaling pathway // inferred from electronic annotation /// 0001961 // positive regulation of cytokine-mediated signaling pathway // not recorded /// 0002792 // negative regulation of peptide secretion // inferred from electronic annotation /// 0002792 // negative regulation of peptide secretion // not recorded /// 0006461 // protein complex assembly // inferred from electronic annotation /// 0006461 // protein complex assembly // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0006952 // defense response // inferred from electronic annotation /// 0006952 // defense response // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0008283 // cell proliferation // inferred from direct assay /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from sequence or structural similarity /// 0008283 // cell proliferation // inferred from electronic annotation /// 0016064 // immunoglobulin mediated immune response // inferred from electronic annotation /// 0016064 // immunoglobulin mediated immune response // not recorded /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0019882 // antigen processing and presentation // not recorded /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // not recorded /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043518 // negative regulation of DNA damage response, signal transduction by p53 class mediator // inferred from electronic annotation /// 0043518 // negative regulation of DNA damage response, signal transduction by p53 class mediator // not recorded /// 0045059 // positive thymic T cell selection // inferred from electronic annotation /// 0045059 // positive thymic T cell selection // not recorded /// 0045060 // negative thymic T cell selection // inferred from electronic annotation /// 0045060 // negative thymic T cell selection // not recorded /// 0045581 // negative regulation of T cell differentiation // inferred from electronic annotation /// 0045581 // negative regulation of T cell differentiation // not recorded /// 0045582 // positive regulation of T cell differentiation // inferred from electronic annotation /// 0045582 // positive regulation of T cell differentiation // not recorded /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0051085 // chaperone mediated protein folding requiring cofactor // inferred from electronic annotation /// 0051085 // chaperone mediated protein folding requiring cofactor // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005770 // late endosome // not recorded /// 0005770 // late endosome // inferred from electronic annotation /// 0005771 // multivesicular body // inferred from electronic annotation /// 0005771 // multivesicular body // not recorded /// 0005773 // vacuole // inferred from electronic annotation /// 0005773 // vacuole // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0001540 // beta-amyloid binding // inferred from electronic annotation /// 0001540 // beta-amyloid binding // not recorded /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // not recorded /// 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019955 // cytokine binding // not recorded /// 0019955 // cytokine binding // inferred from sequence or structural similarity /// 0019955 // cytokine binding // inferred from electronic annotation /// 0042289 // MHC class II protein binding // inferred from electronic annotation 1367680_at NM_017340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017340.1 /DB_XREF=gi:8394148 /GEN=RATACOA1 /FEA=FLmRNA /CNT=32 /TID=Rn.31796.1 /TIER=FL+Stack /STK=24 /UG=Rn.31796 /LL=50681 /DEF=Rattus norvegicus acyl-coA oxidase (RATACOA1), mRNA. /PROD=acyl-coA oxidase /FL=gb:NM_017340.1 gb:J02752.1 NM_017340 acyl-Coenzyme A oxidase 1, palmitoyl Acox1 50681 NM_017340 0000038 // very long-chain fatty acid metabolic process // not recorded /// 0006091 // generation of precursor metabolites and energy // not recorded /// 0006091 // generation of precursor metabolites and energy // inferred from sequence or structural similarity /// 0006629 // lipid metabolic process // not recorded /// 0006629 // lipid metabolic process // inferred from sequence or structural similarity /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// 0006693 // prostaglandin metabolic process // not recorded /// 0006693 // prostaglandin metabolic process // inferred from sequence or structural similarity /// 0007283 // spermatogenesis // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0019395 // fatty acid oxidation // not recorded /// 0019395 // fatty acid oxidation // inferred from sequence or structural similarity /// 0033540 // fatty acid beta-oxidation using acyl-CoA oxidase // inferred from direct assay /// 0033540 // fatty acid beta-oxidation using acyl-CoA oxidase // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // not recorded /// 0005777 // peroxisome // inferred from sequence or structural similarity /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // not recorded 0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0003997 // acyl-CoA oxidase activity // not recorded /// 0003997 // acyl-CoA oxidase activity // inferred from sequence or structural similarity /// 0003997 // acyl-CoA oxidase activity // inferred from electronic annotation /// 0005504 // fatty acid binding // inferred from direct assay /// 0016401 // palmitoyl-CoA oxidase activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1367681_at NM_022523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022523.1 /DB_XREF=gi:11968105 /GEN=Cd151 /FEA=FLmRNA /CNT=29 /TID=Rn.1465.1 /TIER=FL+Stack /STK=24 /UG=Rn.1465 /LL=64315 /DEF=Rattus norvegicus CD151 antigen (Cd151), mRNA. /PROD=CD151 antigen /FL=gb:AF192547.2 gb:NM_022523.1 NM_022523 CD151 molecule (Raph blood group) Cd151 64315 NM_022523 0031581 // hemidesmosome assembly // not recorded 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367682_at NM_030859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030859.1 /DB_XREF=gi:13540680 /GEN=Mdk /FEA=FLmRNA /CNT=29 /TID=Rn.17447.1 /TIER=FL+Stack /STK=24 /UG=Rn.17447 /LL=81517 /DEF=Rattus norvegicus midkine (Mdk), mRNA. /PROD=midkine /FL=gb:AB025023.1 gb:NM_030859.1 gb:AF315950.1 NM_030859 midkine Mdk 81517 NM_030859 0000087 // M phase of mitotic cell cycle // inferred from expression pattern /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009611 // response to wounding // inferred from direct assay /// 0009611 // response to wounding // not recorded /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0016477 // cell migration // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030325 // adrenal gland development // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051781 // positive regulation of cell division // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0008083 // growth factor activity // inferred from electronic annotation /// 0008201 // heparin binding // not recorded /// 0008201 // heparin binding // inferred from sequence or structural similarity /// 0008201 // heparin binding // inferred from electronic annotation 1367683_at NM_053483 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053483.1 /DB_XREF=gi:16758241 /GEN=Kpna2 /FEA=FLmRNA /CNT=27 /TID=Rn.2949.1 /TIER=FL+Stack /STK=24 /UG=Rn.2949 /LL=85245 /DEF=Rattus norvegicus karyopherin (importin) alpha 2 (Kpna2), mRNA. /PROD=karyopherin (importin) alpha 2 /FL=gb:NM_053483.1 NM_053483 karyopherin alpha 2 Kpna2 85245 NM_053483 0006606 // protein import into nucleus // not recorded /// 0006606 // protein import into nucleus // traceable author statement /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006886 // intracellular protein transport // traceable author statement /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0046015 // regulation of transcription by glucose // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded 1367684_at NM_012937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012937.1 /DB_XREF=gi:6978712 /GEN=Crybb2 /FEA=FLmRNA /CNT=25 /TID=Rn.10350.1 /TIER=FL+Stack /STK=24 /UG=Rn.10350 /LL=25422 /DEF=Rattus norvegicus R.norvegicus CRYBB2 gene (crystallin, beta B2) (Crybb2), mRNA. /PROD=R.norvegicus CRYBB2 gene (crystallin, beta B2) /FL=gb:NM_012937.1 NM_012937 crystallin, beta B2 Crybb2 25422 NM_012937 0007601 // visual perception // not recorded /// 0043010 // camera-type eye development // inferred from expression pattern /// 0043010 // camera-type eye development // not recorded 0005212 // structural constituent of eye lens // inferred from electronic annotation /// 0005212 // structural constituent of eye lens // not recorded /// 0042803 // protein homodimerization activity // not recorded 1367685_at NM_031113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031113.1 /DB_XREF=gi:13592076 /GEN=Rps27a /FEA=FLmRNA /CNT=43 /TID=Rn.6014.1 /TIER=FL+Stack /STK=23 /UG=Rn.6014 /LL=81777 /DEF=Rattus norvegicus ribosomal protein S27a (Rps27a), mRNA. /PROD=ribosomal protein S27a /FL=gb:NM_031113.1 NM_031113 ribosomal protein S27a Rps27a 81777 NM_031113 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // not recorded /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // not recorded /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367686_at NM_030835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030835.1 /DB_XREF=gi:13540635 /GEN=RAMP4 /FEA=FLmRNA /CNT=51 /TID=Rn.2119.1 /TIER=FL+Stack /STK=23 /UG=Rn.2119 /LL=80881 /DEF=Rattus norvegicus ribosome associated membrane protein 4 (RAMP4), mRNA. /PROD=ribosome associated membrane protein 4 /FL=gb:AB018546.1 gb:AF100470.1 gb:NM_030835.1 NM_030835 stress-associated endoplasmic reticulum protein 1 Serp1 80881 NM_030835 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006486 // protein glycosylation // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0010259 // multicellular organismal aging // inferred from electronic annotation /// 0010259 // multicellular organismal aging // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // not recorded /// 0032024 // positive regulation of insulin secretion // inferred from electronic annotation /// 0032024 // positive regulation of insulin secretion // not recorded /// 0045727 // positive regulation of translation // inferred from electronic annotation /// 0045727 // positive regulation of translation // not recorded /// 0046622 // positive regulation of organ growth // inferred from electronic annotation /// 0046622 // positive regulation of organ growth // not recorded /// 0048644 // muscle organ morphogenesis // inferred from electronic annotation /// 0048644 // muscle organ morphogenesis // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060124 // positive regulation of growth hormone secretion // inferred from electronic annotation /// 0060124 // positive regulation of growth hormone secretion // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1367687_a_at M25719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M25719.1 /DB_XREF=gi:206024 /FEA=FLmRNA /CNT=23 /TID=Rn.1121.2 /TIER=FL /STK=1 /UG=Rn.1121 /LL=25508 /UG_GENE=Pam /UG_TITLE=Peptidylglycine alpha-amidating monooxygenase /DEF=Rat peptidyl-glycine alpha-amidating monooxygenase (rPAM-2) mRNA, complete cds. /FL=gb:M25719.1 M25719 peptidylglycine alpha-amidating monooxygenase Pam 25508 NM_013000 0001666 // response to hypoxia // inferred from expression pattern /// 0006518 // peptide metabolic process // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from expression pattern /// 0007507 // heart development // inferred from expression pattern /// 0007595 // lactation // inferred from expression pattern /// 0009268 // response to pH // inferred from direct assay /// 0009987 // cellular process // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from direct assay /// 0046688 // response to copper ion // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060173 // limb development // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005624 // membrane fraction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay /// 0030658 // transport vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043204 // perikaryon // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004504 // peptidylglycine monooxygenase activity // inferred from direct assay /// 0004504 // peptidylglycine monooxygenase activity // inferred from electronic annotation /// 0004598 // peptidylamidoglycolate lyase activity // inferred from direct assay /// 0004598 // peptidylamidoglycolate lyase activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from direct assay /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367688_at NM_031725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031725.1 /DB_XREF=gi:13929017 /GEN=Scamp4 /FEA=FLmRNA /CNT=29 /TID=Rn.7309.1 /TIER=FL+Stack /STK=23 /UG=Rn.7309 /LL=65170 /DEF=Rattus norvegicus secretory carrier membrane protein 4 (Scamp4), mRNA. /PROD=secretory carrier membrane protein 4 /FL=gb:AF285631.1 gb:NM_031725.1 NM_031725 secretory carrier membrane protein 4 Scamp4 65170 NM_031725 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0019098 // reproductive behavior // non-traceable author statement 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from direct assay 1367689_a_at AF072411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF072411.1 /DB_XREF=gi:3273896 /FEA=FLmRNA /CNT=38 /TID=Rn.3790.1 /TIER=FL /STK=1 /UG=Rn.3790 /LL=29184 /UG_GENE=Cd36 /DEF=Rattus norvegicus fatty acid translocaseCD36 mRNA, complete cds. /PROD=fatty acid translocaseCD36 /FL=gb:AF072411.1 gb:NM_031561.1 gb:L19658.1 gb:AF113914.1 AF072411 CD36 molecule (thrombospondin receptor) Cd36 29184 NM_031561 0001676 // long-chain fatty acid metabolic process // inferred from mutant phenotype /// 0001954 // positive regulation of cell-matrix adhesion // not recorded /// 0002221 // pattern recognition receptor signaling pathway // not recorded /// 0006631 // fatty acid metabolic process // inferred from direct assay /// 0006631 // fatty acid metabolic process // inferred from mutant phenotype /// 0006641 // triglyceride metabolic process // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006910 // phagocytosis, recognition // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007263 // nitric oxide mediated signal transduction // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from mutant phenotype /// 0010744 // positive regulation of macrophage derived foam cell differentiation // not recorded /// 0014823 // response to activity // inferred from expression pattern /// 0015908 // fatty acid transport // inferred from direct assay /// 0015908 // fatty acid transport // inferred from expression pattern /// 0015908 // fatty acid transport // inferred from mutant phenotype /// 0015909 // long-chain fatty acid transport // inferred from mutant phenotype /// 0015909 // long-chain fatty acid transport // traceable author statement /// 0015911 // plasma membrane long-chain fatty acid transport // not recorded /// 0016525 // negative regulation of angiogenesis // inferred from mutant phenotype /// 0019395 // fatty acid oxidation // inferred from mutant phenotype /// 0019915 // lipid storage // not recorded /// 0019934 // cGMP-mediated signaling // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032735 // positive regulation of interleukin-12 production // not recorded /// 0032755 // positive regulation of interleukin-6 production // not recorded /// 0032760 // positive regulation of tumor necrosis factor production // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0034383 // low-density lipoprotein particle clearance // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042953 // lipoprotein transport // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043277 // apoptotic cell clearance // not recorded /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0044130 // negative regulation of growth of symbiont in host // not recorded /// 0050830 // defense response to Gram-positive bacterium // not recorded /// 0060100 // positive regulation of phagocytosis, engulfment // not recorded /// 0060416 // response to growth hormone stimulus // inferred from expression pattern /// 0060907 // positive regulation of macrophage cytokine production // not recorded /// 0071221 // cellular response to bacterial lipopeptide // not recorded /// 0071222 // cellular response to lipopolysaccharide // not recorded /// 0071223 // cellular response to lipoteichoic acid // not recorded 0005622 // intracellular // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005901 // caveola // inferred from direct assay /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031092 // platelet alpha granule membrane // not recorded /// 0042383 // sarcolemma // inferred from direct assay /// 0045121 // membrane raft // not recorded /// 0045177 // apical part of cell // inferred from direct assay 0004872 // receptor activity // inferred from genetic interaction /// 0004872 // receptor activity // inferred from electronic annotation /// 0005041 // low-density lipoprotein receptor activity // not recorded /// 0005504 // fatty acid binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008035 // high-density lipoprotein binding // not recorded /// 0008289 // lipid binding // not recorded /// 0030169 // low-density lipoprotein binding // not recorded /// 0050431 // transforming growth factor beta binding // inferred from direct assay /// 0051636 // Gram-negative bacterial cell surface binding // not recorded /// 0051637 // Gram-positive bacterial cell surface binding // not recorded /// 0070053 // thrombospondin receptor activity // inferred from direct assay /// 0070892 // lipoteichoic acid receptor activity // not recorded 1367690_at NM_017199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017199.1 /DB_XREF=gi:8394363 /GEN=Ssr4 /FEA=FLmRNA /CNT=34 /TID=Rn.1999.1 /TIER=FL+Stack /STK=23 /UG=Rn.1999 /LL=29435 /DEF=Rattus norvegicus signal sequence receptor, delta (Ssr4), mRNA. /PROD=signal sequence receptor, delta /FL=gb:NM_017199.1 NM_017199 signal sequence receptor, delta Ssr4 29435 NM_017199 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005784 // Sec61 translocon complex // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1367691_at NM_134449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134449.1 /DB_XREF=gi:19745163 /GEN=SRBC /FEA=FLmRNA /CNT=25 /TID=Rn.12281.1 /TIER=FL+Stack /STK=23 /UG=Rn.12281 /LL=85332 /DEF=Rattus norvegicus PKC-delta binding protein (SRBC), mRNA. /PROD=PKC-delta binding protein /FL=gb:D85435.1 gb:NM_134449.1 NM_134449 protein kinase C, delta binding protein Prkcdbp 85332 NM_134449 0001558 // regulation of cell growth // non-traceable author statement 0005080 // protein kinase C binding // inferred from direct assay /// 0005080 // protein kinase C binding // not recorded /// 0005080 // protein kinase C binding // inferred from electronic annotation 1367692_at NM_013024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013024.1 /DB_XREF=gi:6981501 /GEN=Sbp /FEA=FLmRNA /CNT=23 /TID=Rn.9914.1 /TIER=FL+Stack /STK=23 /UG=Rn.9914 /LL=25540 /DEF=Rattus norvegicus Spermine binding protein (Sbp), mRNA. /PROD=spermine binding protein /FL=gb:J02675.1 gb:NM_013024.1 NM_013024 spermine binding protein Sbp 25540 NM_013024 0019808 // polyamine binding // traceable author statement 1367693_at NM_013052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013052.1 /DB_XREF=gi:6981709 /GEN=Ywhah /FEA=FLmRNA /CNT=41 /TID=Rn.3324.1 /TIER=FL+Stack /STK=22 /UG=Rn.3324 /LL=25576 /DEF=Rattus norvegicus Tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, eta polypeptide (Ywhah), mRNA. /PROD=tyrosine 3-monooxygenasetryptophan5-monooxygenase activation protein, eta polypeptide /FL=gb:NM_013052.1 gb:D17445.1 NM_013052 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide Ywhah 25576 NM_013052 0006713 // glucocorticoid catabolic process // inferred from electronic annotation /// 0006713 // glucocorticoid catabolic process // not recorded /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0007165 // signal transduction // traceable author statement /// 0042069 // regulation of catecholamine metabolic process // non-traceable author statement /// 0042921 // glucocorticoid receptor signaling pathway // inferred from electronic annotation /// 0042921 // glucocorticoid receptor signaling pathway // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0050774 // negative regulation of dendrite morphogenesis // inferred from electronic annotation /// 0050774 // negative regulation of dendrite morphogenesis // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0035259 // glucocorticoid receptor binding // inferred from electronic annotation /// 0035259 // glucocorticoid receptor binding // not recorded 1367694_at NM_133618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133618.1 /DB_XREF=gi:19424337 /GEN=Hadhb /FEA=FLmRNA /CNT=39 /TID=Rn.11253.1 /TIER=FL+Stack /STK=22 /UG=Rn.11253 /LL=171155 /DEF=Rattus norvegicus hydroxyacyl-Coenzyme A dehydrogenase3-ketoacyl-Coenzyme A thiolaseenoyl-Coenzyme A hydratase (trifunctional protein), beta subunit (Hadhb), mRNA. /PROD=hydroxyacyl-Coenzyme Adehydrogenase3-ketoacyl-Coenzyme Athiolaseenoyl-Coenzyme A hydratase (trifunctionalprotein), beta subunit /FL=gb:NM_133618.1 NM_133618 hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit Hadhb 171155 NM_133618 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0016507 // fatty acid beta-oxidation multienzyme complex // inferred from direct assay /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded 0000062 // acyl-CoA binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // inferred from direct assay /// 0003988 // acetyl-CoA C-acyltransferase activity // inferred from direct assay /// 0003988 // acetyl-CoA C-acyltransferase activity // not recorded /// 0003988 // acetyl-CoA C-acyltransferase activity // inferred from electronic annotation /// 0004300 // enoyl-CoA hydratase activity // inferred from direct assay /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016508 // long-chain-enoyl-CoA hydratase activity // inferred from direct assay /// 0016509 // long-chain-3-hydroxyacyl-CoA dehydrogenase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from direct assay 1367695_at NM_022390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022390.1 /DB_XREF=gi:11693159 /GEN=Qdpr /FEA=FLmRNA /CNT=30 /TID=Rn.241.1 /TIER=FL+Stack /STK=22 /UG=Rn.241 /LL=64192 /DEF=Rattus norvegicus quinoid dihydropteridine reductase (Qdpr), mRNA. /PROD=quinoid dihydropteridine reductase /FL=gb:NM_022390.1 gb:J03481.1 NM_022390 quinoid dihydropteridine reductase Qdpr 64192 NM_022390 0006729 // tetrahydrobiopterin biosynthetic process // inferred from direct assay /// 0006729 // tetrahydrobiopterin biosynthetic process // inferred from mutant phenotype /// 0006729 // tetrahydrobiopterin biosynthetic process // traceable author statement /// 0006729 // tetrahydrobiopterin biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0019717 // synaptosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004155 // 6,7-dihydropteridine reductase activity // inferred from direct assay /// 0004155 // 6,7-dihydropteridine reductase activity // inferred from mutant phenotype /// 0004155 // 6,7-dihydropteridine reductase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1367696_at NM_030833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030833.1 /DB_XREF=gi:13540633 /GEN=LOC80875 /FEA=FLmRNA /CNT=33 /TID=Rn.2648.1 /TIER=FL+Stack /STK=22 /UG=Rn.2648 /LL=80875 /DEF=Rattus norvegicus interferon-inducible protein 16 (LOC80875), mRNA. /PROD=interferon-inducible protein 16 /FL=gb:AF164040.1 gb:NM_030833.1 NM_030833 interferon induced transmembrane protein 2 Ifitm2 114709 NM_030833 0009607 // response to biotic stimulus // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1367697_at NM_031020 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031020.1 /DB_XREF=gi:13591927 /GEN=Mapk14 /FEA=FLmRNA /CNT=37 /TID=Rn.3293.1 /TIER=FL+Stack /STK=22 /UG=Rn.3293 /LL=81649 /DEF=Rattus norvegicus p38 mitogen activated protein kinase (Mapk14), mRNA. /PROD=p38 mitogen activated protein kinase /FL=gb:AF346293.1 gb:NM_031020.1 gb:U73142.1 gb:U91847.1 NM_031020 mitogen activated protein kinase 14 Mapk14 81649 NM_031020 0000077 // DNA damage checkpoint // inferred from electronic annotation /// 0000077 // DNA damage checkpoint // not recorded /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // not recorded /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006950 // response to stress // not recorded /// 0006950 // response to stress // inferred from sequence or structural similarity /// 0006950 // response to stress // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from sequence or structural similarity /// 0007243 // intracellular protein kinase cascade // traceable author statement /// 0007265 // Ras protein signal transduction // not recorded /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0019395 // fatty acid oxidation // inferred from electronic annotation /// 0019395 // fatty acid oxidation // not recorded /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0031663 // lipopolysaccharide-mediated signaling pathway // not recorded /// 0032495 // response to muramyl dipeptide // inferred from electronic annotation /// 0032495 // response to muramyl dipeptide // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0045648 // positive regulation of erythrocyte differentiation // inferred from electronic annotation /// 0045648 // positive regulation of erythrocyte differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0051403 // stress-activated MAPK cascade // inferred from direct assay 0000922 // spindle pole // inferred from electronic annotation /// 0000922 // spindle pole // not recorded /// 0005623 // cell // inferred from electronic annotation /// 0005623 // cell // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0044445 // cytosolic part // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004707 // MAP kinase activity // inferred from direct assay /// 0004707 // MAP kinase activity // not recorded /// 0004707 // MAP kinase activity // inferred from sequence or structural similarity /// 0004707 // MAP kinase activity // traceable author statement /// 0004707 // MAP kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from direct assay /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1367698_a_at NM_031837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031837.1 /DB_XREF=gi:13929199 /GEN=LOC83788 /FEA=FLmRNA /CNT=29 /TID=Rn.2106.1 /TIER=FL+Stack /STK=22 /UG=Rn.2106 /LL=83788 /DEF=Rattus norvegicus E-septin (LOC83788), mRNA. /PROD=E-septin /FL=gb:NM_031837.1 gb:AF180526.1 gb:AF180525.1 gb:AF170253.1 NM_031837 septin 9 Sept9 83788 NM_001113497 /// NM_031837 /// NM_176856 0007049 // cell cycle // inferred from electronic annotation /// 0051291 // protein heterooligomerization // not recorded /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0001725 // stress fiber // not recorded /// 0001725 // stress fiber // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1367699_at AB008161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB008161.1 /DB_XREF=gi:2558488 /GEN=sh3p8 /FEA=FLmRNA /CNT=29 /TID=Rn.8762.1 /TIER=FL+Stack /STK=22 /UG=Rn.8762 /LL=81922 /DEF=Rattus norvegicus mRNA for SH3P8, complete cds. /PROD=SH3P8 /FL=gb:NM_031239.1 gb:AF009602.1 gb:AB008161.1 AB008161 SH3-domain GRB2-like 1 Sh3gl1 81922 NM_031239 0006897 // endocytosis // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0019902 // phosphatase binding // inferred from physical interaction /// 0051020 // GTPase binding // inferred from physical interaction 1367700_at NM_080698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080698.1 /DB_XREF=gi:18104932 /GEN=Fmod /FEA=FLmRNA /CNT=28 /TID=Rn.8778.1 /TIER=FL+Stack /STK=22 /UG=Rn.8778 /LL=64507 /DEF=Rattus norvegicus fibromodulin (Fmod), mRNA. /PROD=fibromodulin /FL=gb:NM_080698.1 NM_080698 fibromodulin Fmod 64507 NM_080698 0042060 // wound healing // inferred from expression pattern /// 0042476 // odontogenesis // inferred from expression pattern 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005622 // intracellular // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // not recorded 0005515 // protein binding // inferred from electronic annotation 1367701_at NM_031646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031646.1 /DB_XREF=gi:13928891 /GEN=Ramp2 /FEA=FLmRNA /CNT=26 /TID=Rn.31482.1 /TIER=FL+Stack /STK=22 /UG=Rn.31482 /LL=58966 /DEF=Rattus norvegicus receptor (calcitonin) activity modifying protein 2 (Ramp2), mRNA. /PROD=receptor-activity modifying protein 2 /FL=gb:AB042888.1 gb:AB030943.1 gb:AF181551.1 gb:NM_031646.1 NM_031646 receptor (G protein-coupled) activity modifying protein 2 Ramp2 58966 NM_031646 0001666 // response to hypoxia // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from expression pattern /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001664 // G-protein-coupled receptor binding // non-traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0015026 // coreceptor activity // inferred from direct assay /// 0015026 // coreceptor activity // not recorded /// 0046982 // protein heterodimerization activity // non-traceable author statement 1367702_at NM_016986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_016986.1 /DB_XREF=gi:8392832 /GEN=Acadm /FEA=FLmRNA /CNT=25 /TID=Rn.6302.1 /TIER=FL+Stack /STK=22 /UG=Rn.6302 /LL=24158 /DEF=Rattus norvegicus Acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight-chain (Acadm), mRNA. /PROD=acyl-Coenzyme A dehydrogenase, C-4 to C-12straight-chain /FL=gb:J02791.1 gb:NM_016986.1 NM_016986 acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain Acadm 24158 NM_016986 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0005978 // glycogen biosynthetic process // inferred from electronic annotation /// 0005978 // glycogen biosynthetic process // not recorded /// 0006082 // organic acid metabolic process // inferred from electronic annotation /// 0006082 // organic acid metabolic process // not recorded /// 0006111 // regulation of gluconeogenesis // inferred from electronic annotation /// 0006111 // regulation of gluconeogenesis // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // not recorded /// 0006635 // fatty acid beta-oxidation // inferred from sequence or structural similarity /// 0006635 // fatty acid beta-oxidation // traceable author statement /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0009409 // response to cold // inferred from electronic annotation /// 0009409 // response to cold // not recorded /// 0009437 // carnitine metabolic process // not recorded /// 0009437 // carnitine metabolic process // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0019254 // carnitine metabolic process, CoA-linked // inferred from electronic annotation /// 0019254 // carnitine metabolic process, CoA-linked // not recorded /// 0033539 // fatty acid beta-oxidation using acyl-CoA dehydrogenase // inferred from direct assay /// 0033539 // fatty acid beta-oxidation using acyl-CoA dehydrogenase // not recorded /// 0033539 // fatty acid beta-oxidation using acyl-CoA dehydrogenase // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042594 // response to starvation // inferred from electronic annotation /// 0042594 // response to starvation // not recorded /// 0045329 // carnitine biosynthetic process // not recorded /// 0046688 // response to copper ion // inferred from expression pattern /// 0051289 // protein homotetramerization // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051791 // medium-chain fatty acid metabolic process // not recorded /// 0051791 // medium-chain fatty acid metabolic process // inferred from electronic annotation /// 0051793 // medium-chain fatty acid catabolic process // inferred from direct assay /// 0051793 // medium-chain fatty acid catabolic process // not recorded /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from direct assay 0000062 // acyl-CoA binding // inferred from direct assay /// 0003995 // acyl-CoA dehydrogenase activity // inferred from direct assay /// 0003995 // acyl-CoA dehydrogenase activity // not recorded /// 0003995 // acyl-CoA dehydrogenase activity // inferred from sequence or structural similarity /// 0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from direct assay /// 0042802 // identical protein binding // not recorded /// 0050660 // FAD or FADH2 binding // inferred from direct assay /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0070991 // medium-chain-acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0070991 // medium-chain-acyl-CoA dehydrogenase activity // not recorded 1367703_at NM_033095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_033095.1 /DB_XREF=gi:14861861 /GEN=Crygd /FEA=FLmRNA /CNT=24 /TID=Rn.64655.1 /TIER=FL+Stack /STK=22 /UG=Rn.64655 /LL=24278 /DEF=Rattus norvegicus Crystallin, gamma polypeptide 4 (Crygd), mRNA. /PROD=crystallin, gamma polypeptide 4 /FL=gb:NM_033095.1 NM_033095 crystallin, gamma D Crygd 24278 NM_033095 0001654 // eye development // inferred from electronic annotation /// 0001654 // eye development // not recorded /// 0002088 // lens development in camera-type eye // inferred from expression pattern /// 0002088 // lens development in camera-type eye // not recorded /// 0002088 // lens development in camera-type eye // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0034614 // cellular response to reactive oxygen species // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0070306 // lens fiber cell differentiation // inferred from direct assay /// 0070306 // lens fiber cell differentiation // not recorded /// 0070306 // lens fiber cell differentiation // inferred from electronic annotation 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005212 // structural constituent of eye lens // inferred from mutant phenotype /// 0005212 // structural constituent of eye lens // not recorded /// 0005212 // structural constituent of eye lens // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367704_at NM_080583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080583.1 /DB_XREF=gi:18034786 /GEN=Ap2b1 /FEA=FLmRNA /CNT=32 /TID=Rn.56138.1 /TIER=FL+Stack /STK=22 /UG=Rn.56138 /LL=140670 /DEF=Rattus norvegicus adaptor-related protein complex 2, beta 1 subunit (Ap2b1), mRNA. /PROD=adaptor-related protein complex 2, beta 1subunit /FL=gb:M77246.1 gb:NM_080583.1 NM_080583 adaptor-related protein complex 2, beta 1 subunit Ap2b1 140670 NM_080583 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from mutant phenotype /// 0007269 // neurotransmitter secretion // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0048268 // clathrin coat assembly // inferred from direct assay /// 0048268 // clathrin coat assembly // inferred from mutant phenotype /// 0048488 // synaptic vesicle endocytosis // inferred from mutant phenotype /// 0050690 // regulation of defense response to virus by virus // not recorded 0005802 // trans-Golgi network // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030118 // clathrin coat // inferred from direct assay /// 0030119 // AP-type membrane coat adaptor complex // traceable author statement /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0030276 // clathrin binding // inferred from direct assay /// 0030276 // clathrin binding // not recorded /// 0032403 // protein complex binding // inferred from mutant phenotype /// 0032403 // protein complex binding // inferred from physical interaction 1367705_at AF319950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF319950.1 /DB_XREF=gi:12746262 /FEA=FLmRNA /CNT=25 /TID=Rn.1484.1 /TIER=FL /STK=1 /UG=Rn.1484 /LL=64045 /UG_GENE=Glrx /DEF=Rattus norvegicus glutaredoxin mRNA, complete cds. /PROD=glutaredoxin /FL=gb:AF319950.1 gb:AF167981.3 gb:NM_022278.1 AF319950 glutaredoxin 1 Glrx1 64045 NM_022278 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0015038 // glutathione disulfide oxidoreductase activity // not recorded /// 0047485 // protein N-terminus binding // not recorded 1367706_at NM_031353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031353.1 /DB_XREF=gi:13786199 /GEN=Vdac1 /FEA=FLmRNA /CNT=40 /TID=Rn.54594.1 /TIER=FL+Stack /STK=21 /UG=Rn.54594 /LL=83529 /DEF=Rattus norvegicus voltage-dependent anion channel 1 (Vdac1), mRNA. /PROD=voltage-dependent anion channel 1 /FL=gb:AB039662.1 gb:AF268467.1 gb:NM_031353.1 NM_031353 voltage-dependent anion channel 1 Vdac1 83529 NM_031353 0001662 // behavioral fear response // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006820 // anion transport // inferred from electronic annotation /// 0006851 // mitochondrial calcium ion transport // inferred from direct assay /// 0006915 // apoptosis // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007270 // nerve-nerve synaptic transmission // not recorded /// 0007612 // learning // not recorded /// 0034765 // regulation of ion transmembrane transport // not recorded /// 0044070 // regulation of anion transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded /// 0046930 // pore complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005253 // anion channel activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008308 // voltage-gated anion channel activity // inferred from direct assay /// 0008308 // voltage-gated anion channel activity // not recorded /// 0008308 // voltage-gated anion channel activity // inferred from sequence or structural similarity /// 0008308 // voltage-gated anion channel activity // inferred from electronic annotation /// 0015288 // porin activity // inferred from electronic annotation 1367707_at NM_017332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017332.1 /DB_XREF=gi:8394157 /GEN=Fasn /FEA=FLmRNA /CNT=58 /TID=Rn.9486.1 /TIER=FL+Stack /STK=21 /UG=Rn.9486 /LL=50671 /DEF=Rattus norvegicus fatty acid synthase (Fasn), mRNA. /PROD=fatty acid synthase /FL=gb:M76767.1 gb:NM_017332.1 NM_017332 fatty acid synthase Fasn 50671 NM_017332 0006084 // acetyl-CoA metabolic process // inferred from direct assay /// 0006633 // fatty acid biosynthetic process // inferred from mutant phenotype /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // traceable author statement /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // not recorded /// 0042470 // melanosome // inferred from electronic annotation /// 0042587 // glycogen granule // not recorded 0000036 // acyl carrier activity // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004312 // fatty acid synthase activity // inferred from direct assay /// 0004312 // fatty acid synthase activity // inferred from mutant phenotype /// 0004312 // fatty acid synthase activity // inferred from electronic annotation /// 0004313 // [acyl-carrier-protein] S-acetyltransferase activity // inferred from electronic annotation /// 0004313 // [acyl-carrier-protein] S-acetyltransferase activity // not recorded /// 0004314 // [acyl-carrier-protein] S-malonyltransferase activity // inferred from electronic annotation /// 0004314 // [acyl-carrier-protein] S-malonyltransferase activity // not recorded /// 0004315 // 3-oxoacyl-[acyl-carrier-protein] synthase activity // inferred from electronic annotation /// 0004315 // 3-oxoacyl-[acyl-carrier-protein] synthase activity // not recorded /// 0004316 // 3-oxoacyl-[acyl-carrier-protein] reductase activity // inferred from electronic annotation /// 0004316 // 3-oxoacyl-[acyl-carrier-protein] reductase activity // not recorded /// 0004317 // 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity // inferred from electronic annotation /// 0004319 // enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity // inferred from electronic annotation /// 0004319 // enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity // not recorded /// 0004320 // oleoyl-[acyl-carrier-protein] hydrolase activity // inferred from electronic annotation /// 0004320 // oleoyl-[acyl-carrier-protein] hydrolase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008144 // drug binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0019171 // 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity // not recorded /// 0031177 // phosphopantetheine binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0048037 // cofactor binding // inferred from electronic annotation /// 0070402 // NADPH binding // inferred from direct assay 1367708_a_at AI179334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179334 /DB_XREF=gi:3729972 /DB_XREF=EST223030 /CLONE=RSPCF40 /FEA=FLmRNA /CNT=58 /TID=Rn.9486.1 /TIER=Stack /STK=17 /UG=Rn.9486 /LL=50671 /UG_GENE=Fasn /UG_TITLE=fatty acid synthase /FL=gb:M76767.1 gb:NM_017332.1 AI179334 fatty acid synthase Fasn 50671 NM_017332 0006084 // acetyl-CoA metabolic process // inferred from direct assay /// 0006633 // fatty acid biosynthetic process // inferred from mutant phenotype /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // traceable author statement /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // not recorded /// 0042470 // melanosome // inferred from electronic annotation /// 0042587 // glycogen granule // not recorded 0000036 // acyl carrier activity // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004312 // fatty acid synthase activity // inferred from direct assay /// 0004312 // fatty acid synthase activity // inferred from mutant phenotype /// 0004312 // fatty acid synthase activity // inferred from electronic annotation /// 0004313 // [acyl-carrier-protein] S-acetyltransferase activity // inferred from electronic annotation /// 0004313 // [acyl-carrier-protein] S-acetyltransferase activity // not recorded /// 0004314 // [acyl-carrier-protein] S-malonyltransferase activity // inferred from electronic annotation /// 0004314 // [acyl-carrier-protein] S-malonyltransferase activity // not recorded /// 0004315 // 3-oxoacyl-[acyl-carrier-protein] synthase activity // inferred from electronic annotation /// 0004315 // 3-oxoacyl-[acyl-carrier-protein] synthase activity // not recorded /// 0004316 // 3-oxoacyl-[acyl-carrier-protein] reductase activity // inferred from electronic annotation /// 0004316 // 3-oxoacyl-[acyl-carrier-protein] reductase activity // not recorded /// 0004317 // 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity // inferred from electronic annotation /// 0004319 // enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity // inferred from electronic annotation /// 0004319 // enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity // not recorded /// 0004320 // oleoyl-[acyl-carrier-protein] hydrolase activity // inferred from electronic annotation /// 0004320 // oleoyl-[acyl-carrier-protein] hydrolase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008144 // drug binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0019171 // 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity // not recorded /// 0031177 // phosphopantetheine binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0048037 // cofactor binding // inferred from electronic annotation /// 0070402 // NADPH binding // inferred from direct assay 1367709_at NM_017125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017125.1 /DB_XREF=gi:8393075 /GEN=Cd63 /FEA=FLmRNA /CNT=45 /TID=Rn.11068.1 /TIER=FL+Stack /STK=21 /UG=Rn.11068 /LL=29186 /DEF=Rattus norvegicus Cd63 antigen (Cd63), mRNA. /PROD=Cd63 antigen /FL=gb:NM_017125.1 NM_017125 Cd63 molecule Cd63 29186 NM_017125 0010633 // negative regulation of epithelial cell migration // inferred from mutant phenotype /// 0030855 // epithelial cell differentiation // inferred from mutant phenotype /// 0045785 // positive regulation of cell adhesion // inferred from mutant phenotype /// 0045807 // positive regulation of endocytosis // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0010008 // endosome membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030658 // transport vesicle membrane // inferred from electronic annotation /// 0031088 // platelet dense granule membrane // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from direct assay 1367710_at NM_017257 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017257.1 /DB_XREF=gi:8394090 /GEN=Psme2 /FEA=FLmRNA /CNT=31 /TID=Rn.4017.1 /TIER=FL+Stack /STK=21 /UG=Rn.4017 /LL=29614 /DEF=Rattus norvegicus protease (prosome, macropain) 28 subunit, beta (Psme2), mRNA. /PROD=protease (prosome, macropain) 28 subunit, beta /FL=gb:NM_017257.1 NM_017257 proteasome (prosome, macropain) activator subunit 2 Psme2 29614 NM_017257 0010950 // positive regulation of endopeptidase activity // not recorded /// 0019884 // antigen processing and presentation of exogenous antigen // not recorded /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation /// 0008537 // proteasome activator complex // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0061133 // endopeptidase activator activity // not recorded 1367711_at NM_033236 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_033236.1 /DB_XREF=gi:15100180 /GEN=Psmc2 /FEA=FLmRNA /CNT=27 /TID=Rn.1202.1 /TIER=FL+Stack /STK=21 /UG=Rn.1202 /LL=25581 /DEF=Rattus norvegicus Proteasome (prosome, macropain) 26S subunit, ATPase (Psmc2), mRNA. /PROD=proteasome (prosome, macropain) 26S subunit,ATPase /FL=gb:NM_033236.1 gb:D50694.1 NM_033236 proteasome (prosome, macropain) 26S subunit, ATPase 2 Psmc2 25581 NM_033236 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation /// 0000502 // proteasome complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1367712_at NM_053819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053819.1 /DB_XREF=gi:16758665 /GEN=Timp1 /FEA=FLmRNA /CNT=29 /TID=Rn.25754.1 /TIER=FL+Stack /STK=21 /UG=Rn.25754 /LL=116510 /DEF=Rattus norvegicus tissue inhibitor of metalloproteinase 1 (Timp1), mRNA. /PROD=tissue inhibitor of metalloproteinase 1 /FL=gb:NM_053819.1 gb:U06179.1 gb:L31883.1 NM_053819 TIMP metallopeptidase inhibitor 1 Timp1 116510 NM_053819 0001775 // cell activation // inferred from mutant phenotype /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042060 // wound healing // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0043249 // erythrocyte maturation // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0051045 // negative regulation of membrane protein ectodomain proteolysis // not recorded /// 0051216 // cartilage development // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0031012 // extracellular matrix // inferred from direct assay 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008191 // metalloendopeptidase inhibitor activity // not recorded /// 0008191 // metalloendopeptidase inhibitor activity // traceable author statement /// 0008191 // metalloendopeptidase inhibitor activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367713_at NM_019356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019356.1 /DB_XREF=gi:9506570 /GEN=Eif2s1 /FEA=FLmRNA /CNT=28 /TID=Rn.1488.1 /TIER=FL+Stack /STK=21 /UG=Rn.1488 /LL=54318 /DEF=Rattus norvegicus eukaryotic translation initiation factor 2, subunit 1 (alpha ) (Eif2s1), mRNA. /PROD=eukaryotic translation initiation factor 2,subunit 1 (alpha ) /FL=gb:J02646.1 gb:NM_019356.1 NM_019356 eukaryotic translation initiation factor 2, subunit 1 alpha Eif2s1 54318 NM_019356 0006412 // translation // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0043558 // regulation of translational initiation in response to stress // inferred from electronic annotation /// 0043558 // regulation of translational initiation in response to stress // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005850 // eukaryotic translation initiation factor 2 complex // inferred from electronic annotation /// 0005851 // eukaryotic translation initiation factor 2B complex // not recorded /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from sequence or structural similarity /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // not recorded /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1367714_at NM_032058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032058.1 /DB_XREF=gi:14091737 /GEN=Eif2b2 /FEA=FLmRNA /CNT=25 /TID=Rn.5910.1 /TIER=FL+Stack /STK=21 /UG=Rn.5910 /LL=84005 /DEF=Rattus norvegicus eukaryotic translation initiation factor 2B, subunit 2 (beta, 39kD) (Eif2b2), mRNA. /PROD=eukaryotic translation initiation factor 2B,subunit 2 (beta, 39kD) /FL=gb:NM_032058.1 gb:U31880.1 gb:U83914.1 NM_032058 eukaryotic translation initiation factor 2B, subunit 2 beta Eif2b2 84005 NM_032058 0001541 // ovarian follicle development // inferred from electronic annotation /// 0001541 // ovarian follicle development // not recorded /// 0001541 // ovarian follicle development // inferred from sequence or structural similarity /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // not recorded /// 0006413 // translational initiation // inferred from sequence or structural similarity /// 0006413 // translational initiation // traceable author statement /// 0006413 // translational initiation // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0007417 // central nervous system development // inferred from sequence or structural similarity /// 0009408 // response to heat // inferred from direct assay /// 0009749 // response to glucose stimulus // inferred from direct assay /// 0014003 // oligodendrocyte development // inferred from electronic annotation /// 0014003 // oligodendrocyte development // not recorded /// 0014003 // oligodendrocyte development // inferred from sequence or structural similarity /// 0042552 // myelination // inferred from electronic annotation /// 0042552 // myelination // not recorded /// 0042552 // myelination // inferred from sequence or structural similarity /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0044237 // cellular metabolic process // inferred from electronic annotation /// 0051716 // cellular response to stimulus // inferred from electronic annotation /// 0051716 // cellular response to stimulus // not recorded /// 0051716 // cellular response to stimulus // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from physical interaction /// 0005851 // eukaryotic translation initiation factor 2B complex // not recorded /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from sequence or structural similarity /// 0005851 // eukaryotic translation initiation factor 2B complex // traceable author statement /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from electronic annotation 0003743 // translation initiation factor activity // not recorded /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // translation initiation factor activity // traceable author statement /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from genetic interaction /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from sequence or structural similarity 1367715_at NM_013091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013091.1 /DB_XREF=gi:6981663 /GEN=Tnfrsf1a /FEA=FLmRNA /CNT=24 /TID=Rn.11119.1 /TIER=FL+Stack /STK=21 /UG=Rn.11119 /LL=25625 /DEF=Rattus norvegicus Tumor necrosis factor receptor superfamily, member 1a (Tnfrsf1a), mRNA. /PROD=Tumor necrosis factor receptor superfamily,member 1a /FL=gb:M63122.1 gb:AF329979.1 gb:AF329978.1 gb:AF329981.1 gb:AF329977.1 gb:AF329980.1 gb:AF329976.1 gb:NM_013091.1 NM_013091 tumor necrosis factor receptor superfamily, member 1a Tnfrsf1a 25625 NM_013091 0006693 // prostaglandin metabolic process // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006952 // defense response // not recorded /// 0006952 // defense response // inferred from sequence or structural similarity /// 0006952 // defense response // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from expression pattern /// 0006954 // inflammatory response // not recorded /// 0006954 // inflammatory response // inferred from sequence or structural similarity /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from sequence or structural similarity /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0009611 // response to wounding // inferred from expression pattern /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from sequence or structural similarity /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033209 // tumor necrosis factor-mediated signaling pathway // not recorded /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0042742 // defense response to bacterium // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // not recorded /// 0050729 // positive regulation of inflammatory response // inferred from sequence or structural similarity /// 0050729 // positive regulation of inflammatory response // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from physical interaction 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005031 // tumor necrosis factor receptor activity // not recorded /// 0005031 // tumor necrosis factor receptor activity // inferred from sequence or structural similarity /// 0005031 // tumor necrosis factor receptor activity // non-traceable author statement /// 0005031 // tumor necrosis factor receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1367716_at NM_133557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133557.1 /DB_XREF=gi:19424235 /GEN=Cda08 /FEA=FLmRNA /CNT=30 /TID=Rn.3622.1 /TIER=FL+Stack /STK=21 /UG=Rn.3622 /DEF=Rattus norvegicus hypothetical protein CDA08 (Cda08), mRNA. /PROD=hypothetical protein CDA08 /FL=gb:AF480856.1 gb:NM_133557.1 NM_133557 integrin alpha FG-GAP repeat containing 1 Itfg1 171083 NM_133557 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367717_at NM_053597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053597.1 /DB_XREF=gi:16758381 /GEN=Rps27 /FEA=FLmRNA /CNT=54 /TID=Rn.7481.1 /TIER=FL+Stack /STK=20 /UG=Rn.7481 /LL=94266 /DEF=Rattus norvegicus ribosomal protein S27 (Rps27), mRNA. /PROD=ribosomal protein S27 /FL=gb:AF184893.1 gb:NM_053597.1 NM_053597 ribosomal protein S27 Rps27 94266 NM_053597 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0022627 // cytosolic small ribosomal subunit // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from direct assay /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1367718_at NM_017177 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017177.1 /DB_XREF=gi:8393103 /GEN=Chetk /FEA=FLmRNA /CNT=28 /TID=Rn.1302.1 /TIER=FL+Stack /STK=20 /UG=Rn.1302 /LL=29367 /DEF=Rattus norvegicus cholineethanolamine kinase (Chetk), mRNA. /PROD=cholineethanolamine kinase /FL=gb:NM_017177.1 gb:AB006607.1 NM_017177 choline kinase beta Chkb 29367 NM_017177 0006646 // phosphatidylethanolamine biosynthetic process // not recorded /// 0006646 // phosphatidylethanolamine biosynthetic process // inferred from sequence or structural similarity /// 0006656 // phosphatidylcholine biosynthetic process // not recorded /// 0006657 // CDP-choline pathway // not recorded /// 0007517 // muscle organ development // not recorded /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004103 // choline kinase activity // inferred from direct assay /// 0004103 // choline kinase activity // not recorded /// 0004103 // choline kinase activity // inferred from sequence or structural similarity /// 0004103 // choline kinase activity // inferred from electronic annotation /// 0004305 // ethanolamine kinase activity // inferred from electronic annotation /// 0004305 // ethanolamine kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1367719_at NM_053989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053989.1 /DB_XREF=gi:16758893 /GEN=dd5 /FEA=FLmRNA /CNT=30 /TID=Rn.54812.1 /TIER=FL+Stack /STK=20 /UG=Rn.54812 /LL=117060 /DEF=Rattus norvegicus progestin induced protein (dd5), mRNA. /PROD=progestin induced protein /FL=gb:NM_053989.1 NM_053989 ubiquitin protein ligase E3 component n-recognin 5 Ubr5 117060 NM_001191990 /// XM_001061308 /// XM_576252 0006464 // protein modification process // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0016567 // protein ubiquitination // traceable author statement /// 0050847 // progesterone receptor signaling pathway // inferred from electronic annotation /// 0050847 // progesterone receptor signaling pathway // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1367720_at NM_012899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012899.1 /DB_XREF=gi:6978482 /GEN=Alad /FEA=FLmRNA /CNT=30 /TID=Rn.3941.1 /TIER=FL+Stack /STK=20 /UG=Rn.3941 /LL=25374 /DEF=Rattus norvegicus aminolevulinate,delta-,dehydratase (Alad), mRNA. /PROD=aminolevulinate,delta-,dehydratase /FL=gb:NM_012899.1 NM_012899 aminolevulinate, delta-, dehydratase Alad 25374 NM_012899 0001666 // response to hypoxia // inferred from expression pattern /// 0006779 // porphyrin biosynthetic process // inferred from electronic annotation /// 0006783 // heme biosynthetic process // inferred from direct assay /// 0006783 // heme biosynthetic process // not recorded /// 0006783 // heme biosynthetic process // inferred from sequence or structural similarity /// 0006783 // heme biosynthetic process // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0007584 // response to nutrient // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0009635 // response to herbicide // inferred from expression pattern /// 0009636 // response to toxin // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from direct assay /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010038 // response to metal ion // inferred from direct assay /// 0010038 // response to metal ion // inferred from expression pattern /// 0010039 // response to iron ion // inferred from expression pattern /// 0010043 // response to zinc ion // inferred from direct assay /// 0010044 // response to aluminum ion // inferred from expression pattern /// 0010212 // response to ionizing radiation // inferred from expression pattern /// 0010266 // response to vitamin B1 // inferred from expression pattern /// 0010269 // response to selenium ion // inferred from expression pattern /// 0010288 // response to lead ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014823 // response to activity // inferred from expression pattern /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032025 // response to cobalt ion // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033014 // tetrapyrrole biosynthetic process // inferred from electronic annotation /// 0033197 // response to vitamin E // inferred from expression pattern /// 0033273 // response to vitamin // inferred from expression pattern /// 0042221 // response to chemical stimulus // inferred from direct assay /// 0042493 // response to drug // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0045471 // response to ethanol // inferred from direct assay /// 0046685 // response to arsenic // inferred from direct assay /// 0046685 // response to arsenic // inferred from expression pattern /// 0046686 // response to cadmium ion // inferred from direct assay /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0046689 // response to mercury ion // inferred from expression pattern /// 0051260 // protein homooligomerization // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051597 // response to methylmercury // inferred from expression pattern /// 0070541 // response to platinum ion // inferred from expression pattern /// 0070542 // response to fatty acid // inferred from expression pattern /// 0071284 // cellular response to lead ion // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004655 // porphobilinogen synthase activity // inferred from direct assay /// 0004655 // porphobilinogen synthase activity // not recorded /// 0004655 // porphobilinogen synthase activity // inferred from sequence or structural similarity /// 0004655 // porphobilinogen synthase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0016829 // lyase activity // inferred from electronic annotation /// 0032791 // lead ion binding // not recorded /// 0032791 // lead ion binding // inferred from sequence or structural similarity /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1367721_at NM_012649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012649.1 /DB_XREF=gi:6981521 /GEN=Sdc4 /FEA=FLmRNA /CNT=24 /TID=Rn.2029.1 /TIER=FL+Stack /STK=20 /UG=Rn.2029 /LL=24771 /DEF=Rattus norvegicus Ryudocansyndecan 4 (Sdc4), mRNA. /PROD=ryudocansyndecan 4 /FL=gb:NM_012649.1 gb:M81786.1 NM_012649 syndecan 4 Sdc4 24771 NM_012649 0001657 // ureteric bud development // inferred from expression pattern /// 0007155 // cell adhesion // non-traceable author statement /// 0007267 // cell-cell signaling // non-traceable author statement /// 0045860 // positive regulation of protein kinase activity // inferred from mutant phenotype /// 0051496 // positive regulation of stress fiber assembly // inferred from mutant phenotype /// 0051894 // positive regulation of focal adhesion assembly // inferred from mutant phenotype 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005925 // focal adhesion // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043034 // costamere // inferred from direct assay /// 0045121 // membrane raft // inferred from mutant phenotype 0001968 // fibronectin binding // inferred from direct assay /// 0005080 // protein kinase C binding // inferred from direct assay /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0070053 // thrombospondin receptor activity // inferred from electronic annotation /// 0070053 // thrombospondin receptor activity // not recorded 1367722_at NM_031973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031973.1 /DB_XREF=gi:14010870 /GEN=Dpp7 /FEA=FLmRNA /CNT=25 /TID=Rn.3363.1 /TIER=FL+Stack /STK=20 /UG=Rn.3363 /LL=83799 /DEF=Rattus norvegicus dipeptidyl peptidase 7 (Dpp7), mRNA. /PROD=dipeptidyl peptidase 7 /FL=gb:AB048711.1 gb:AB038232.1 gb:NM_031973.1 NM_031973 dipeptidylpeptidase 7 Dpp7 83799 NM_031973 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005829 // cytosol // inferred from mutant phenotype /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0008239 // dipeptidyl-peptidase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation 1367723_a_at NM_031621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031621.1 /DB_XREF=gi:13928851 /GEN=Lnk /FEA=FLmRNA /CNT=23 /TID=Rn.11228.1 /TIER=FL+Stack /STK=20 /UG=Rn.11228 /LL=58838 /DEF=Rattus norvegicus linker of T-cell receptor pathways (Lnk), mRNA. /PROD=linker of T-cell receptor pathways /FL=gb:NM_031621.1 gb:U24655.1 NM_031621 SH2B adaptor protein 3 Sh2b3 58838 NM_031621 0023034 // intracellular signaling pathway // not recorded /// 0030097 // hemopoiesis // not recorded /// 0030154 // cell differentiation // not recorded /// 0035162 // embryonic hemopoiesis // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0042301 // phosphate binding // inferred from direct assay 1367724_a_at NM_053578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053578.2 /DB_XREF=gi:19923698 /GEN=Atp6k /FEA=FLmRNA /CNT=22 /TID=Rn.789.1 /TIER=FL+Stack /STK=20 /UG=Rn.789 /LL=94170 /DEF=Rattus norvegicus vacuolar proton-ATPase subunit M9.2 (Atp6k), mRNA. /PROD=vacuolar proton-ATPase subunit M9.2 /FL=gb:NM_053578.2 NM_053578 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 Atp6v0e1 94170 NM_053578 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0016049 // cell growth // inferred from electronic annotation /// 0016049 // cell growth // not recorded /// 0043200 // response to amino acid stimulus // inferred from expression pattern 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0033179 // proton-transporting V-type ATPase, V0 domain // inferred from electronic annotation 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1367725_at NM_022602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022602.1 /DB_XREF=gi:12083582 /GEN=Pim3 /FEA=FLmRNA /CNT=28 /TID=Rn.6343.1 /TIER=FL+Stack /STK=20 /UG=Rn.6343 /LL=64534 /DEF=Rattus norvegicus serine threonine kinase pim3 (Pim3), mRNA. /PROD=serine threonine kinase pim3 /FL=gb:AF057026.1 gb:AF086624.1 gb:NM_022602.1 NM_022602 pim-3 oncogene Pim3 64534 NM_022602 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007346 // regulation of mitotic cell cycle // not recorded /// 0016572 // histone phosphorylation // inferred from direct assay /// 0043066 // negative regulation of apoptosis // not recorded /// 0046777 // protein autophosphorylation // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1367726_at NM_031134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031134.1 /DB_XREF=gi:13592114 /GEN=Thra1 /FEA=FLmRNA /CNT=21 /TID=Rn.11307.1 /TIER=FL+Stack /STK=20 /UG=Rn.11307 /LL=81812 /DEF=Rattus norvegicus thyroid hormone receptor alpha (Thra1), mRNA. /PROD=thyroid hormone receptor /FL=gb:NM_031134.1 gb:M31177.1 gb:M31174.1 NM_031134 thyroid hormone receptor alpha Thra 81812 NM_001017960 /// NM_031134 0001502 // cartilage condensation // not recorded /// 0001502 // cartilage condensation // inferred from electronic annotation /// 0001503 // ossification // not recorded /// 0001503 // ossification // inferred from electronic annotation /// 0001822 // kidney development // inferred from expression pattern /// 0001889 // liver development // inferred from expression pattern /// 0002155 // regulation of thyroid hormone mediated signaling pathway // not recorded /// 0002155 // regulation of thyroid hormone mediated signaling pathway // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006950 // response to stress // inferred from expression pattern /// 0007165 // signal transduction // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0007611 // learning or memory // not recorded /// 0007611 // learning or memory // inferred from electronic annotation /// 0008016 // regulation of heart contraction // not recorded /// 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0008050 // female courtship behavior // not recorded /// 0008050 // female courtship behavior // inferred from electronic annotation /// 0009409 // response to cold // not recorded /// 0009409 // response to cold // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0009755 // hormone-mediated signaling pathway // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010831 // positive regulation of myotube differentiation // not recorded /// 0010831 // positive regulation of myotube differentiation // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0017055 // negative regulation of RNA polymerase II transcriptional preinitiation complex assembly // not recorded /// 0017055 // negative regulation of RNA polymerase II transcriptional preinitiation complex assembly // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // not recorded /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030324 // lung development // inferred from expression pattern /// 0030325 // adrenal gland development // inferred from expression pattern /// 0030878 // thyroid gland development // not recorded /// 0030878 // thyroid gland development // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0033032 // regulation of myeloid cell apoptosis // not recorded /// 0033032 // regulation of myeloid cell apoptosis // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042994 // cytoplasmic sequestering of transcription factor // not recorded /// 0042994 // cytoplasmic sequestering of transcription factor // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045925 // positive regulation of female receptivity // not recorded /// 0045925 // positive regulation of female receptivity // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048565 // digestive tract development // inferred from expression pattern /// 0048568 // embryonic organ development // inferred from expression pattern /// 0050994 // regulation of lipid catabolic process // not recorded /// 0050994 // regulation of lipid catabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0002153 // steroid receptor RNA activator RNA binding // not recorded /// 0002153 // steroid receptor RNA activator RNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0003727 // single-stranded RNA binding // inferred from direct assay /// 0003727 // single-stranded RNA binding // not recorded /// 0003727 // single-stranded RNA binding // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // not recorded /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0004887 // thyroid hormone receptor activity // inferred from direct assay /// 0004887 // thyroid hormone receptor activity // not recorded /// 0004887 // thyroid hormone receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016988 // transcription initiation factor antagonist activity // not recorded /// 0016988 // transcription initiation factor antagonist activity // inferred from electronic annotation /// 0017025 // TATA-binding protein binding // not recorded /// 0017025 // TATA-binding protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0044213 // intronic transcription regulatory region DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0070324 // thyroid hormone binding // not recorded /// 0070324 // thyroid hormone binding // inferred from electronic annotation 1367727_at NM_053911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053911.1 /DB_XREF=gi:16758791 /GEN=Pscd2 /FEA=FLmRNA /CNT=21 /TID=Rn.3732.1 /TIER=FL+Stack /STK=20 /UG=Rn.3732 /LL=116692 /DEF=Rattus norvegicus pleckstrin homology, Sec7 and coiledcoil domains 2 (Pscd2), mRNA. /PROD=pleckstrin homology, Sec7 and coiledcoildomains 2 /FL=gb:NM_053911.1 gb:U83896.1 NM_053911 cytohesin 2 Cyth2 116692 NM_053911 0016358 // dendrite development // traceable author statement /// 0032012 // regulation of ARF protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005086 // ARF guanyl-nucleotide exchange factor activity // traceable author statement /// 0005086 // ARF guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1367728_at NM_021762 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021762.1 /DB_XREF=gi:11120711 /GEN=Tsn /FEA=FLmRNA /CNT=21 /TID=Rn.38875.1 /TIER=FL+Stack /STK=20 /UG=Rn.38875 /LL=60381 /DEF=Rattus norvegicus translin (Tsn), mRNA. /PROD=translin /FL=gb:AF262356.1 gb:NM_021762.1 NM_021762 translin Tsn 60381 NM_021762 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from direct assay /// 0003729 // mRNA binding // not recorded /// 0003729 // mRNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1367729_at NM_022521 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022521.1 /DB_XREF=gi:11968101 /GEN=Oat /FEA=FLmRNA /CNT=46 /TID=Rn.1430.1 /TIER=FL+Stack /STK=19 /UG=Rn.1430 /LL=64313 /DEF=Rattus norvegicus ornithine aminotransferase (Oat), mRNA. /PROD=ornithine aminotransferase /FL=gb:M11842.1 gb:NM_022521.1 NM_022521 ornithine aminotransferase (gyrate atrophy) Oat 64313 NM_022521 0006591 // ornithine metabolic process // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003992 // N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity // traceable author statement /// 0004587 // ornithine-oxo-acid transaminase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1367730_at NM_019379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019379.1 /DB_XREF=gi:9507176 /GEN=Vdp /FEA=FLmRNA /CNT=31 /TID=Rn.4746.1 /TIER=FL+Stack /STK=19 /UG=Rn.4746 /LL=56042 /DEF=Rattus norvegicus vesicle docking protein, 115 kDa (Vdp), mRNA. /PROD=transcytosis associated protein /FL=gb:U14192.1 gb:U15589.1 gb:NM_019379.1 NM_019379 USO1 homolog, vesicle docking protein (yeast) Uso1 56042 NM_019379 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0006891 // intra-Golgi vesicle-mediated transport // traceable author statement /// 0006944 // cellular membrane fusion // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0045056 // transcytosis // inferred from direct assay /// 0048280 // vesicle fusion with Golgi apparatus // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0008565 // protein transporter activity // not recorded 1367731_at NM_030987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030987.1 /DB_XREF=gi:13591873 /GEN=Gnb1 /FEA=FLmRNA /CNT=49 /TID=Rn.7106.1 /TIER=FL+Stack /STK=19 /UG=Rn.7106 /LL=24400 /DEF=Rattus norvegicus Guanine nucleotide-binding protein beta 1 (Gnb1), mRNA. /PROD=guanine nucleotide-binding protein, beta-1no. subunit /FL=gb:NM_030987.1 gb:U88324.1 gb:U34958.1 NM_030987 guanine nucleotide binding protein (G protein), beta polypeptide 1 Gnb1 24400 NM_030987 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // traceable author statement /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0050909 // sensory perception of taste // inferred from electronic annotation /// 0050909 // sensory perception of taste // not recorded 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0001750 // photoreceptor outer segment // not recorded /// 0005834 // heterotrimeric G-protein complex // inferred from mutant phenotype /// 0005834 // heterotrimeric G-protein complex // not recorded /// 0005834 // heterotrimeric G-protein complex // traceable author statement /// 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0001664 // G-protein-coupled receptor binding // inferred from mutant phenotype /// 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005246 // calcium channel regulator activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0031702 // type 1 angiotensin receptor binding // inferred from mutant phenotype 1367732_at U34958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U34958.1 /DB_XREF=gi:984552 /FEA=FLmRNA /CNT=49 /TID=Rn.7106.1 /TIER=FL+Stack /STK=7 /UG=Rn.7106 /LL=24400 /UG_GENE=Gnb1 /DEF=Rat G protein beta 1 subunit mRNA, complete cds. /PROD=G protein beta 1 subunit /FL=gb:NM_030987.1 gb:U88324.1 gb:U34958.1 U34958 guanine nucleotide binding protein (G protein), beta polypeptide 1 Gnb1 24400 NM_030987 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // traceable author statement /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0050909 // sensory perception of taste // inferred from electronic annotation /// 0050909 // sensory perception of taste // not recorded 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0001750 // photoreceptor outer segment // not recorded /// 0005834 // heterotrimeric G-protein complex // inferred from mutant phenotype /// 0005834 // heterotrimeric G-protein complex // not recorded /// 0005834 // heterotrimeric G-protein complex // traceable author statement /// 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0001664 // G-protein-coupled receptor binding // inferred from mutant phenotype /// 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005246 // calcium channel regulator activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0031702 // type 1 angiotensin receptor binding // inferred from mutant phenotype 1367733_at NM_019291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019291.1 /DB_XREF=gi:9506444 /GEN=Ca2 /FEA=FLmRNA /CNT=46 /TID=Rn.26083.1 /TIER=FL+Stack /STK=19 /UG=Rn.26083 /LL=54231 /DEF=Rattus norvegicus carbonic anhydrase 2 (Ca2), mRNA. /PROD=carbonic anhydrase 2 /FL=gb:NM_019291.1 NM_019291 carbonic anhydrase II Car2 54231 NM_019291 0001822 // kidney development // inferred from expression pattern /// 0002009 // morphogenesis of an epithelium // inferred from electronic annotation /// 0002009 // morphogenesis of an epithelium // not recorded /// 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0006950 // response to stress // inferred from expression pattern /// 0009268 // response to pH // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0010043 // response to zinc ion // inferred from expression pattern /// 0015670 // carbon dioxide transport // inferred from electronic annotation /// 0015670 // carbon dioxide transport // not recorded /// 0030316 // osteoclast differentiation // traceable author statement /// 0030641 // regulation of cellular pH // traceable author statement /// 0032849 // positive regulation of cellular pH reduction // inferred from mutant phenotype /// 0042475 // odontogenesis of dentine-containing tooth // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045124 // regulation of bone resorption // traceable author statement /// 0045672 // positive regulation of osteoclast differentiation // inferred from mutant phenotype /// 0045780 // positive regulation of bone resorption // inferred from mutant phenotype /// 0046903 // secretion // inferred from electronic annotation /// 0046903 // secretion // not recorded /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005902 // microvillus // inferred from direct assay /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0045177 // apical part of cell // inferred from direct assay /// 0045177 // apical part of cell // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation 0004089 // carbonate dehydratase activity // inferred from direct assay /// 0004089 // carbonate dehydratase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0016829 // lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367734_at NM_012498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012498.1 /DB_XREF=gi:6978490 /GEN=Akr1b1 /FEA=FLmRNA /CNT=35 /TID=Rn.2917.1 /TIER=FL+Stack /STK=19 /UG=Rn.2917 /LL=24192 /DEF=Rattus norvegicus Aldehyde reductase 1 (low Km aldose reductase) (5.8 kb PstI fragment, probably the functional gene) (Akr1b1), mRNA. /PROD=aldehyde reductase 1 (low Km aldose reductase)(5.8 kb PstI fragment, probably the functional gene) /FL=gb:NM_012498.1 NM_012498 aldo-keto reductase family 1, member B1 (aldose reductase) Akr1b1 24192 NM_012498 0006061 // sorbitol biosynthetic process // inferred from mutant phenotype /// 0008152 // metabolic process // not recorded /// 0010033 // response to organic substance // inferred from direct assay /// 0031098 // stress-activated protein kinase signaling cascade // inferred from mutant phenotype /// 0046427 // positive regulation of JAK-STAT cascade // inferred from mutant phenotype /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004032 // aldehyde reductase activity // inferred from direct assay /// 0004032 // aldehyde reductase activity // not recorded /// 0004032 // aldehyde reductase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1367735_at NM_012819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012819.1 /DB_XREF=gi:6978430 /GEN=Acadl /FEA=FLmRNA /CNT=30 /TID=Rn.174.1 /TIER=FL+Stack /STK=19 /UG=Rn.174 /LL=25287 /DEF=Rattus norvegicus Acyl Coenzyme A dehydrogenase, long chain (Acadl), mRNA. /PROD=acyl Coenzyme A dehydrogenase, long chain /FL=gb:NM_012819.1 gb:J05029.1 gb:L11276.1 NM_012819 acyl-Coenzyme A dehydrogenase, long-chain Acadl 25287 NM_012819 0001659 // temperature homeostasis // inferred from electronic annotation /// 0001659 // temperature homeostasis // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0019254 // carnitine metabolic process, CoA-linked // inferred from electronic annotation /// 0019254 // carnitine metabolic process, CoA-linked // not recorded /// 0033539 // fatty acid beta-oxidation using acyl-CoA dehydrogenase // inferred from direct assay /// 0033539 // fatty acid beta-oxidation using acyl-CoA dehydrogenase // not recorded /// 0033539 // fatty acid beta-oxidation using acyl-CoA dehydrogenase // inferred from electronic annotation /// 0042413 // carnitine catabolic process // inferred from electronic annotation /// 0042413 // carnitine catabolic process // not recorded /// 0042758 // long-chain fatty acid catabolic process // inferred from direct assay /// 0044242 // cellular lipid catabolic process // inferred from electronic annotation /// 0044242 // cellular lipid catabolic process // not recorded /// 0045717 // negative regulation of fatty acid biosynthetic process // inferred from electronic annotation /// 0045717 // negative regulation of fatty acid biosynthetic process // not recorded /// 0046322 // negative regulation of fatty acid oxidation // inferred from electronic annotation /// 0046322 // negative regulation of fatty acid oxidation // not recorded /// 0051289 // protein homotetramerization // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded /// 0090181 // regulation of cholesterol metabolic process // inferred from electronic annotation /// 0090181 // regulation of cholesterol metabolic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from direct assay 0000062 // acyl-CoA binding // inferred from direct assay /// 0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0004466 // long-chain-acyl-CoA dehydrogenase activity // inferred from direct assay /// 0004466 // long-chain-acyl-CoA dehydrogenase activity // not recorded /// 0004466 // long-chain-acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0016401 // palmitoyl-CoA oxidase activity // inferred from electronic annotation /// 0016401 // palmitoyl-CoA oxidase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from direct assay /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1367736_at NM_053973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053973.1 /DB_XREF=gi:16758867 /GEN=Raga /FEA=FLmRNA /CNT=27 /TID=Rn.2816.1 /TIER=FL+Stack /STK=19 /UG=Rn.2816 /LL=117044 /DEF=Rattus norvegicus Ras-related GTP-binding protein ragA (Raga), mRNA. /PROD=Ras-related GTP-binding protein ragA /FL=gb:NM_053973.1 NM_053973 Ras-related GTP binding A Rraga 117044 NM_053973 0006915 // apoptosis // inferred from electronic annotation /// 0008219 // cell death // not recorded /// 0008219 // cell death // inferred from sequence or structural similarity /// 0008219 // cell death // inferred from electronic annotation /// 0019048 // virus-host interaction // not recorded /// 0019048 // virus-host interaction // inferred from sequence or structural similarity /// 0019048 // virus-host interaction // inferred from electronic annotation /// 0045919 // positive regulation of cytolysis // not recorded /// 0045919 // positive regulation of cytolysis // inferred from sequence or structural similarity /// 0045919 // positive regulation of cytolysis // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0005525 // GTP binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0051219 // phosphoprotein binding // not recorded /// 0051219 // phosphoprotein binding // inferred from sequence or structural similarity /// 0051219 // phosphoprotein binding // inferred from electronic annotation 1367737_at NM_012562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012562.1 /DB_XREF=gi:6978860 /GEN=Fuca1 /FEA=FLmRNA /CNT=25 /TID=Rn.3469.1 /TIER=FL+Stack /STK=19 /UG=Rn.3469 /LL=24375 /DEF=Rattus norvegicus Fucosidase, alpha-L-1, tissue (Fuca1), mRNA. /PROD=fucosidase, alpha-L-1, tissue /FL=gb:NM_012562.1 NM_012562 fucosidase, alpha-L- 1, tissue Fuca1 24375 NM_012562 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006004 // fucose metabolic process // non-traceable author statement /// 0006004 // fucose metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016142 // O-glycoside catabolic process // non-traceable author statement 0005625 // soluble fraction // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004560 // alpha-L-fucosidase activity // non-traceable author statement /// 0004560 // alpha-L-fucosidase activity // inferred from electronic annotation /// 0005529 // sugar binding // inferred from direct assay /// 0015928 // fucosidase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation 1367738_at NM_017188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017188.1 /DB_XREF=gi:8394512 /GEN=Unc119 /FEA=FLmRNA /CNT=24 /TID=Rn.1609.1 /TIER=FL+Stack /STK=19 /UG=Rn.1609 /LL=29402 /DEF=Rattus norvegicus UNC-119 homolog (C. elegans) (Unc119), mRNA. /PROD=UNC-119 homolog (C. elegans) /FL=gb:NM_017188.1 gb:U40999.1 NM_017188 UNC-119 homolog (C. elegans) Unc119 29402 NM_017188 0007601 // visual perception // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 1367739_at NM_012786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012786.1 /DB_XREF=gi:6978692 /GEN=Cox8h /FEA=FLmRNA /CNT=23 /TID=Rn.10325.1 /TIER=FL+Stack /STK=19 /UG=Rn.10325 /LL=25250 /DEF=Rattus norvegicus Cytochrome c oxidase subunit VIII-H (heartmuscle) (Cox8h), mRNA. /PROD=cytochrome c oxidase subunit VIII-H(heartmuscle) /FL=gb:NM_012786.1 NM_012786 cytochrome c oxidase, subunit VIIIb Cox8b 25250 NM_012786 0006123 // mitochondrial electron transport, cytochrome c to oxygen // traceable author statement /// 0042493 // response to drug // inferred from expression pattern 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // traceable author statement /// 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation 1367740_at M14400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M14400.1 /DB_XREF=gi:203469 /FEA=FLmRNA /CNT=29 /TID=Rn.1472.1 /TIER=FL+Stack /STK=19 /UG=Rn.1472 /LL=24264 /UG_GENE=Ckb /UG_TITLE=Creatine kinase, brain /DEF=Rat brain creatine kinase mRNA, complete cds. /FL=gb:M14400.1 gb:NM_012529.1 M14400 creatine kinase, brain Ckb 24264 NM_012529 0006600 // creatine metabolic process // not recorded /// 0006603 // phosphocreatine metabolic process // traceable author statement /// 0007420 // brain development // inferred from expression pattern /// 0030644 // cellular chloride ion homeostasis // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004111 // creatine kinase activity // traceable author statement /// 0004111 // creatine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation 1367741_at NM_053523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053523.1 /DB_XREF=gi:16758961 /GEN=Herpud1 /FEA=FLmRNA /CNT=28 /TID=Rn.4028.1 /TIER=FL+Stack /STK=19 /UG=Rn.4028 /LL=85430 /DEF=Rattus norvegicus homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 (Herpud1), mRNA. /PROD=homocysteine-inducible, endoplasmic reticulumstress-inducible, ubiquitin-like domain member 1 /FL=gb:AB033771.1 gb:NM_053523.1 NM_053523 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 Herpud1 85430 NM_053523 0006874 // cellular calcium ion homeostasis // inferred from mutant phenotype /// 0006950 // response to stress // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from electronic annotation /// 0006986 // response to unfolded protein // not recorded /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from mutant phenotype /// 0043154 // negative regulation of caspase activity // inferred from mutant phenotype 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367742_at NM_013200 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013200.1 /DB_XREF=gi:6978702 /GEN=Cpt1b /FEA=FLmRNA /CNT=27 /TID=Rn.6028.1 /TIER=FL+Stack /STK=19 /UG=Rn.6028 /LL=25756 /DEF=Rattus norvegicus Carnitine palmitoyltransferase 1 beta, muscle isoform (Cpt1b), mRNA. /PROD=carnitine palmitoyltransferase 1 beta, muscleisoform /FL=gb:NM_013200.1 gb:D43623.1 NM_013200 carnitine palmitoyltransferase 1b, muscle Cpt1b 25756 NM_013200 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006853 // carnitine shuttle // not recorded /// 0015909 // long-chain fatty acid transport // inferred from direct assay /// 0046320 // regulation of fatty acid oxidation // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004095 // carnitine O-palmitoyltransferase activity // inferred from direct assay /// 0004095 // carnitine O-palmitoyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1367743_at NM_013190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013190.1 /DB_XREF=gi:6981351 /GEN=Pfkl /FEA=FLmRNA /CNT=27 /TID=Rn.16607.1 /TIER=FL+Stack /STK=19 /UG=Rn.16607 /LL=25741 /DEF=Rattus norvegicus Phosphofructokinase, liver, B-type (Pfkl), mRNA. /PROD=phosphofructokinase, liver, B-type /FL=gb:NM_013190.1 NM_013190 phosphofructokinase, liver Pfkl 25741 NM_013190 0005975 // carbohydrate metabolic process // inferred from direct assay /// 0006002 // fructose 6-phosphate metabolic process // inferred from direct assay /// 0006002 // fructose 6-phosphate metabolic process // not recorded /// 0006002 // fructose 6-phosphate metabolic process // inferred from electronic annotation /// 0006096 // glycolysis // inferred from direct assay /// 0006096 // glycolysis // not recorded /// 0006096 // glycolysis // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from electronic annotation /// 0009749 // response to glucose stimulus // not recorded /// 0030388 // fructose 1,6-bisphosphate metabolic process // inferred from direct assay /// 0046676 // negative regulation of insulin secretion // inferred from electronic annotation /// 0046676 // negative regulation of insulin secretion // not recorded /// 0046835 // carbohydrate phosphorylation // not recorded /// 0051259 // protein oligomerization // not recorded /// 0051289 // protein homotetramerization // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005945 // 6-phosphofructokinase complex // inferred from electronic annotation /// 0005945 // 6-phosphofructokinase complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003872 // 6-phosphofructokinase activity // inferred from direct assay /// 0003872 // 6-phosphofructokinase activity // not recorded /// 0003872 // 6-phosphofructokinase activity // traceable author statement /// 0003872 // 6-phosphofructokinase activity // inferred from electronic annotation /// 0004331 // fructose-2,6-bisphosphate 2-phosphatase activity // traceable author statement /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019900 // kinase binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048029 // monosaccharide binding // inferred from direct assay /// 0070061 // fructose binding // not recorded /// 0070095 // fructose-6-phosphate binding // inferred from direct assay /// 0070095 // fructose-6-phosphate binding // not recorded 1367744_at NM_080479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080479.1 /DB_XREF=gi:17978454 /GEN=Maged2 /FEA=FLmRNA /CNT=23 /TID=Rn.11984.1 /TIER=FL+Stack /STK=19 /UG=Rn.11984 /LL=113947 /DEF=Rattus norvegicus melanoma antigen, family D, 2 (Maged2), mRNA. /PROD=melanoma antigen, family D, 2 /FL=gb:NM_080479.1 NM_080479 melanoma antigen, family D, 2 Maged2 113947 NM_080479 1367745_at NM_031143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031143.1 /DB_XREF=gi:13592130 /GEN=Dgkz /FEA=FLmRNA /CNT=22 /TID=Rn.11208.1 /TIER=FL+Stack /STK=19 /UG=Rn.11208 /LL=81821 /DEF=Rattus norvegicus diacylglycerol kinase zeta (Dgkz), mRNA. /PROD=diacylglycerol kinase zeta /FL=gb:D78588.1 gb:NM_031143.1 NM_031143 diacylglycerol kinase zeta Dgkz 81821 NM_031143 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0031571 // mitotic cell cycle G1/S DNA damage checkpoint // not recorded /// 0045930 // negative regulation of mitotic cell cycle // not recorded /// 0046580 // negative regulation of Ras protein signal transduction // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0001727 // lipid kinase activity // not recorded /// 0004143 // diacylglycerol kinase activity // inferred from direct assay /// 0004143 // diacylglycerol kinase activity // inferred from electronic annotation /// 0004143 // diacylglycerol kinase activity // not recorded /// 0004857 // enzyme inhibitor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367746_a_at NM_031830 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031830.1 /DB_XREF=gi:13929185 /GEN=Flot2 /FEA=FLmRNA /CNT=21 /TID=Rn.2105.1 /TIER=FL+Stack /STK=19 /UG=Rn.2105 /LL=83764 /DEF=Rattus norvegicus flotillin 2 (Flot2), mRNA. /PROD=flotillin 2 /FL=gb:AF023303.1 gb:NM_031830.1 gb:AF023302.1 NM_031830 flotillin 2 Flot2 83764 NM_031830 0007155 // cell adhesion // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016600 // flotillin complex // inferred from direct assay /// 0016600 // flotillin complex // inferred from physical interaction /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction 1367747_at NM_022700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022700.1 /DB_XREF=gi:12083660 /GEN=Arl3 /FEA=FLmRNA /CNT=21 /TID=Rn.9538.1 /TIER=FL+Stack /STK=19 /UG=Rn.9538 /LL=64664 /DEF=Rattus norvegicus ADP-ribosylation factor-like 3 (Arl3), mRNA. /PROD=ADP-ribosylation factor-like 3 /FL=gb:NM_022700.1 gb:U12568.1 NM_022700 ADP-ribosylation factor-like 3 Arl3 64664 NM_022700 0007049 // cell cycle // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1367748_at NM_024149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024149.1 /DB_XREF=gi:13162338 /GEN=Arf5 /FEA=FLmRNA /CNT=29 /TID=Rn.28244.1 /TIER=FL+Stack /STK=19 /UG=Rn.28244 /LL=79117 /DEF=Rattus norvegicus ADP-ribosylation factor 5 (Arf5), mRNA. /PROD=ADP-ribosylation factor 5 /FL=gb:NM_024149.1 gb:L12384.1 NM_024149 ADP-ribosylation factor 5 Arf5 79117 NM_024149 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1367749_at NM_031050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031050.1 /DB_XREF=gi:13591982 /GEN=Lum /FEA=FLmRNA /CNT=24 /TID=Rn.3087.1 /TIER=FL+Stack /STK=19 /UG=Rn.3087 /LL=81682 /DEF=Rattus norvegicus lumican (Lum), mRNA. /PROD=lumican /FL=gb:NM_031050.1 NM_031050 lumican Lum 81682 NM_031050 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0051216 // cartilage development // inferred from expression pattern /// 0070848 // response to growth factor stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from direct assay /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005583 // fibrillar collagen // inferred from electronic annotation /// 0005583 // fibrillar collagen // not recorded /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005518 // collagen binding // inferred from electronic annotation /// 0005518 // collagen binding // not recorded 1367750_at NM_022545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022545.1 /DB_XREF=gi:11968139 /GEN=Prpsap1 /FEA=FLmRNA /CNT=23 /TID=Rn.2290.1 /TIER=FL+Stack /STK=19 /UG=Rn.2290 /LL=64390 /DEF=Rattus norvegicus phosphoribosylpyrophosphate synthetase-associated protein (39 kDa) (Prpsap1), mRNA. /PROD=phosphoribosylpyrophosphatesynthetase-associated protein (39 kDa) /FL=gb:NM_022545.1 gb:D26073.1 NM_022545 phosphoribosyl pyrophosphate synthetase-associated protein 1 Prpsap1 64390 NM_022545 0009165 // nucleotide biosynthetic process // traceable author statement /// 0009165 // nucleotide biosynthetic process // inferred from electronic annotation 0043234 // protein complex // inferred from direct assay 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004749 // ribose phosphate diphosphokinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030234 // enzyme regulator activity // inferred from mutant phenotype /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1367751_at NM_019252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019252.1 /DB_XREF=gi:9506550 /GEN=Dpm2 /FEA=FLmRNA /CNT=22 /TID=Rn.2122.1 /TIER=FL+Stack /STK=19 /UG=Rn.2122 /LL=29640 /DEF=Rattus norvegicus dolichol-phosphate (beta-D) mannosyltransferase 2 (Dpm2), mRNA. /PROD=dolichol-phosphate (beta-D) mannosyltransferase2 /FL=gb:NM_019252.1 gb:AB013359.1 NM_019252 dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit Dpm2 29640 NM_019252 0006506 // GPI anchor biosynthetic process // inferred from direct assay /// 0006506 // GPI anchor biosynthetic process // not recorded /// 0006506 // GPI anchor biosynthetic process // traceable author statement /// 0009059 // macromolecule biosynthetic process // inferred from electronic annotation /// 0016254 // preassembly of GPI anchor in ER membrane // not recorded /// 0019348 // dolichol metabolic process // inferred from direct assay /// 0031647 // regulation of protein stability // not recorded 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation /// 0033185 // dolichol-phosphate-mannose synthase complex // inferred from direct assay /// 0033185 // dolichol-phosphate-mannose synthase complex // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004582 // dolichyl-phosphate beta-D-mannosyltransferase activity // inferred from direct assay /// 0004582 // dolichyl-phosphate beta-D-mannosyltransferase activity // not recorded /// 0005515 // protein binding // not recorded /// 0030234 // enzyme regulator activity // inferred from direct assay 1367752_at NM_012931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012931.1 /DB_XREF=gi:6978708 /GEN=Crkas /FEA=FLmRNA /CNT=21 /TID=Rn.40101.1 /TIER=FL+Stack /STK=19 /UG=Rn.40101 /LL=25414 /DEF=Rattus norvegicus v-crk-associated tyrosine kinase substrate (Crkas), mRNA. /PROD=v-crk-associated tyrosine kinase substrate /FL=gb:D29766.1 gb:NM_012931.1 NM_012931 breast cancer anti-estrogen resistance 1 Bcar1 25414 NM_012931 0007015 // actin filament organization // not recorded /// 0007015 // actin filament organization // inferred from sequence or structural similarity /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from sequence or structural similarity /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // not recorded /// 0007229 // integrin-mediated signaling pathway // inferred from sequence or structural similarity /// 0008286 // insulin receptor signaling pathway // inferred from direct assay /// 0016477 // cell migration // inferred from mutant phenotype /// 0016477 // cell migration // not recorded /// 0016477 // cell migration // inferred from sequence or structural similarity /// 0016477 // cell migration // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from mutant phenotype /// 0030335 // positive regulation of cell migration // not recorded /// 0030335 // positive regulation of cell migration // inferred from sequence or structural similarity /// 0048008 // platelet-derived growth factor receptor signaling pathway // not recorded /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0048011 // nerve growth factor receptor signaling pathway // inferred from direct assay /// 0050851 // antigen receptor-mediated signaling pathway // not recorded /// 0050851 // antigen receptor-mediated signaling pathway // inferred from sequence or structural similarity /// 0050853 // B cell receptor signaling pathway // not recorded /// 0050853 // B cell receptor signaling pathway // inferred from sequence or structural similarity 0001726 // ruffle // not recorded /// 0001726 // ruffle // inferred from sequence or structural similarity /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from sequence or structural similarity /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005925 // focal adhesion // inferred from direct assay /// 0005925 // focal adhesion // inferred from mutant phenotype /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030054 // cell junction // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0019903 // protein phosphatase binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction 1367753_at NM_033021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_033021.1 /DB_XREF=gi:14717391 /GEN=VAP1 /FEA=FLmRNA /CNT=20 /TID=Rn.6322.1 /TIER=FL+Stack /STK=19 /UG=Rn.6322 /LL=93646 /DEF=Rattus norvegicus vesicle associated protein (VAP1), mRNA. /PROD=vesicle associated protein /FL=gb:NM_033021.1 gb:AF034582.1 NM_033021 SEC31 homolog A (S. cerevisiae) Sec31a 93646 NM_033021 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0012507 // ER to Golgi transport vesicle membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0048306 // calcium-dependent protein binding // not recorded 1367754_s_at NM_031330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031330.1 /DB_XREF=gi:13786155 /GEN=Hnrpab /FEA=FLmRNA /CNT=25 /TID=Rn.1427.1 /TIER=FL+Stack /STK=19 /UG=Rn.1427 /LL=83498 /DEF=Rattus norvegicus heterogeneous nuclear ribonucleoprotein AB (Hnrpab), mRNA. /PROD=heterogeneous nuclear ribonucleoprotein AB /FL=gb:NM_031330.1 gb:AB016536.1 NM_031330 argininosuccinate lyase Asl 59085 NM_021577 0000050 // urea cycle // inferred from direct assay /// 0000050 // urea cycle // non-traceable author statement /// 0000050 // urea cycle // inferred from electronic annotation /// 0000053 // argininosuccinate metabolic process // inferred from direct assay /// 0001101 // response to acid // inferred from expression pattern /// 0001822 // kidney development // inferred from expression pattern /// 0001889 // liver development // inferred from direct assay /// 0001889 // liver development // inferred from expression pattern /// 0006520 // cellular amino acid metabolic process // not recorded /// 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006526 // arginine biosynthetic process // non-traceable author statement /// 0006526 // arginine biosynthetic process // inferred from electronic annotation /// 0007494 // midgut development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0010043 // response to zinc ion // inferred from expression pattern /// 0014075 // response to amine stimulus // inferred from expression pattern /// 0019676 // ammonia assimilation cycle // inferred from electronic annotation /// 0019676 // ammonia assimilation cycle // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0042450 // arginine biosynthetic process via ornithine // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from direct assay /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0060416 // response to growth hormone stimulus // inferred from expression pattern /// 0060539 // diaphragm development // inferred from expression pattern /// 0071242 // cellular response to ammonium ion // inferred from expression pattern /// 0071320 // cellular response to cAMP // inferred from expression pattern /// 0071346 // cellular response to interferon-gamma // inferred from expression pattern /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern /// 0071377 // cellular response to glucagon stimulus // inferred from expression pattern /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from expression pattern /// 0071549 // cellular response to dexamethasone stimulus // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070852 // cell body fiber // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003688 // DNA replication origin binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004056 // argininosuccinate lyase activity // inferred from direct assay /// 0004056 // argininosuccinate lyase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation 1367755_at NM_052809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_052809.1 /DB_XREF=gi:16258826 /GEN=Cdo1 /FEA=FLmRNA /CNT=24 /TID=Rn.2589.1 /TIER=FL+Stack /STK=19 /UG=Rn.2589 /LL=81718 /DEF=Rattus norvegicus cytosolic cysteine dioxygenase 1 (Cdo1), mRNA. /PROD=cytosolic cysteine dioxygenase 1 /FL=gb:M35266.1 gb:NM_052809.1 NM_052809 cysteine dioxygenase, type I Cdo1 81718 NM_052809 0006534 // cysteine metabolic process // traceable author statement /// 0007595 // lactation // inferred from direct assay /// 0010243 // response to organic nitrogen // inferred from direct assay /// 0019448 // L-cysteine catabolic process // inferred from direct assay /// 0033762 // response to glucagon stimulus // inferred from direct assay /// 0043200 // response to amino acid stimulus // inferred from direct assay /// 0045471 // response to ethanol // inferred from direct assay /// 0046439 // L-cysteine metabolic process // non-traceable author statement /// 0046439 // L-cysteine metabolic process // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // inferred from direct assay /// 0051591 // response to cAMP // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005829 // cytosol // not recorded /// 0005829 // cytosol // traceable author statement /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0005506 // iron ion binding // inferred from electronic annotation /// 0008198 // ferrous iron binding // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0017172 // cysteine dioxygenase activity // inferred from direct assay /// 0017172 // cysteine dioxygenase activity // traceable author statement /// 0017172 // cysteine dioxygenase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367756_at NM_053625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053625.1 /DB_XREF=gi:16758431 /GEN=EF-G /FEA=FLmRNA /CNT=19 /TID=Rn.10913.1 /TIER=FL+Stack /STK=19 /UG=Rn.10913 /LL=114017 /DEF=Rattus norvegicus G elongation factor (EF-G), mRNA. /PROD=G elongation factor /FL=gb:L14684.1 gb:NM_053625.1 NM_053625 G elongation factor, mitochondrial 1 Gfm1 114017 NM_053625 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // inferred from electronic annotation /// 0070125 // mitochondrial translational elongation // not recorded /// 0070125 // mitochondrial translational elongation // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0003746 // translation elongation factor activity // not recorded /// 0003746 // translation elongation factor activity // inferred from sequence or structural similarity /// 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0005525 // GTP binding // inferred from electronic annotation 1367757_at NM_019360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019360.1 /DB_XREF=gi:9506508 /GEN=Cox6c /FEA=FLmRNA /CNT=31 /TID=Rn.846.1 /TIER=FL+Stack /STK=18 /UG=Rn.846 /LL=54322 /DEF=Rattus norvegicus cytochrome oxidase subunit VIc (Cox6c), mRNA. /PROD=cytochrome oxidase subunit VIc /FL=gb:M27466.1 gb:NM_019360.1 gb:M27467.1 NM_019360 cytochrome c oxidase, subunit VIc Cox6c 54322 NM_019360 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005751 // mitochondrial respiratory chain complex IV // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // traceable author statement /// 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation 1367758_at NM_012493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012493.1 /DB_XREF=gi:6978470 /GEN=Afp /FEA=FLmRNA /CNT=37 /TID=Rn.9174.1 /TIER=FL+Stack /STK=18 /UG=Rn.9174 /LL=24177 /DEF=Rattus norvegicus Alpha-fetoprotein (Afp), mRNA. /PROD=alpha-fetoprotein /FL=gb:NM_012493.1 NM_012493 alpha-fetoprotein Afp 24177 NM_012493 0001542 // ovulation from ovarian follicle // inferred from electronic annotation /// 0001542 // ovulation from ovarian follicle // not recorded /// 0001889 // liver development // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from expression pattern /// 0019953 // sexual reproduction // inferred from electronic annotation /// 0019953 // sexual reproduction // not recorded /// 0031016 // pancreas development // inferred from expression pattern /// 0031100 // organ regeneration // inferred from expression pattern /// 0042448 // progesterone metabolic process // inferred from electronic annotation /// 0042448 // progesterone metabolic process // not recorded /// 0060395 // SMAD protein signal transduction // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0046872 // metal ion binding // inferred from electronic annotation 1367759_at NM_012578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012578.1 /DB_XREF=gi:6981003 /GEN=H1f0 /FEA=FLmRNA /CNT=34 /TID=Rn.3129.1 /TIER=FL+Stack /STK=18 /UG=Rn.3129 /LL=24437 /DEF=Rattus norvegicus Histone H1-0 (H1f0), mRNA. /PROD=histone H1-0 /FL=gb:NM_012578.1 NM_012578 H1 histone family, member 0 H1f0 24437 NM_012578 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded 0003677 // DNA binding // inferred from electronic annotation 1367760_at D13341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D13341.1 /DB_XREF=gi:220811 /FEA=FLmRNA /CNT=36 /TID=Rn.5850.1 /TIER=FL+Stack /STK=18 /UG=Rn.5850 /LL=170851 /UG_GENE=Map2k1 /DEF=Rattus norvegicus mRNA for MAP kinase kinase, complete cds. /PROD=MAP kinase kinase /FL=gb:D14591.1 gb:D13341.1 gb:NM_031643.1 D13341 mitogen activated protein kinase kinase 1 Map2k1 170851 NM_031643 0000165 // MAPKKK cascade // inferred from mutant phenotype /// 0000187 // activation of MAPK activity // inferred from direct assay /// 0000187 // activation of MAPK activity // not recorded /// 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0003056 // regulation of vascular smooth muscle contraction // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from direct assay /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0007067 // mitosis // inferred from direct assay /// 0007243 // intracellular protein kinase cascade // traceable author statement /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0008283 // cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0016311 // dephosphorylation // not recorded /// 0030182 // neuron differentiation // inferred from mutant phenotype /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // not recorded /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0032320 // positive regulation of Ras GTPase activity // inferred from mutant phenotype /// 0032402 // melanosome transport // inferred from direct assay /// 0032968 // positive regulation of RNA elongation from RNA polymerase II promoter // inferred from mutant phenotype /// 0034111 // negative regulation of homotypic cell-cell adhesion // inferred from mutant phenotype /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // not recorded /// 0047496 // vesicle transport along microtubule // inferred from direct assay /// 0048313 // Golgi inheritance // inferred from mutant phenotype /// 0048678 // response to axon injury // inferred from mutant phenotype /// 0048812 // neuron projection morphogenesis // inferred from mutant phenotype /// 0048870 // cell motility // inferred from electronic annotation /// 0048870 // cell motility // not recorded /// 0051291 // protein heterooligomerization // inferred from physical interaction /// 0051384 // response to glucocorticoid stimulus // inferred from direct assay /// 0060674 // placenta blood vessel development // inferred from electronic annotation /// 0060674 // placenta blood vessel development // not recorded /// 0060711 // labyrinthine layer development // inferred from electronic annotation /// 0060711 // labyrinthine layer development // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0032839 // dendrite cytoplasm // inferred from direct assay /// 0033267 // axon part // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004708 // MAP kinase kinase activity // inferred from direct assay /// 0004708 // MAP kinase kinase activity // inferred from mutant phenotype /// 0004708 // MAP kinase kinase activity // not recorded /// 0004708 // MAP kinase kinase activity // traceable author statement /// 0004708 // MAP kinase kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004728 // receptor signaling protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004728 // receptor signaling protein tyrosine phosphatase activity // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017016 // Ras GTPase binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from direct assay /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from physical interaction 1367761_at NM_133320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133320.1 /DB_XREF=gi:18959267 /GEN=Nudel /FEA=FLmRNA /CNT=33 /TID=Rn.2947.1 /TIER=FL+Stack /STK=18 /UG=Rn.2947 /DEF=Rattus norvegicus LIS1-interacting protein NUDEL; endooligopeptidase A (Nudel), mRNA. /PROD=LIS1-interacting protein NUDEL;endooligopeptidase A /FL=gb:NM_133320.1 gb:AY008298.1 NM_133320 nuclear distribution gene E-like homolog 1 (A. nidulans) Ndel1 170845 NM_133320 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0000226 // microtubule cytoskeleton organization // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0001833 // inner cell mass cell proliferation // inferred from electronic annotation /// 0001833 // inner cell mass cell proliferation // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007059 // chromosome segregation // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0008090 // retrograde axon cargo transport // inferred from electronic annotation /// 0008090 // retrograde axon cargo transport // not recorded /// 0010975 // regulation of neuron projection development // inferred from mutant phenotype /// 0010975 // regulation of neuron projection development // not recorded /// 0010975 // regulation of neuron projection development // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0021955 // central nervous system neuron axonogenesis // inferred from electronic annotation /// 0021955 // central nervous system neuron axonogenesis // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0032864 // activation of Cdc42 GTPase activity // inferred from electronic annotation /// 0032864 // activation of Cdc42 GTPase activity // not recorded /// 0045773 // positive regulation of axon extension // inferred from mutant phenotype /// 0047496 // vesicle transport along microtubule // inferred from electronic annotation /// 0047496 // vesicle transport along microtubule // not recorded /// 0048680 // positive regulation of axon regeneration // inferred from mutant phenotype /// 0051081 // nuclear envelope disassembly // inferred from direct assay /// 0051642 // centrosome localization // inferred from electronic annotation /// 0051642 // centrosome localization // not recorded /// 0060052 // neurofilament cytoskeleton organization // inferred from electronic annotation /// 0060052 // neurofilament cytoskeleton organization // not recorded 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // not recorded /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from mutant phenotype /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005871 // kinesin complex // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // not recorded /// 0005875 // microtubule associated complex // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from electronic annotation /// 0031252 // cell leading edge // not recorded /// 0044297 // cell body // inferred from direct assay /// 0060053 // neurofilament cytoskeleton // inferred from electronic annotation /// 0060053 // neurofilament cytoskeleton // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction /// 0043014 // alpha-tubulin binding // inferred from electronic annotation /// 0043014 // alpha-tubulin binding // not recorded /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // not recorded /// 0070012 // oligopeptidase activity // inferred from mutant phenotype 1367762_at NM_012659 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012659.1 /DB_XREF=gi:6981581 /GEN=Sst /FEA=FLmRNA /CNT=27 /TID=Rn.34418.1 /TIER=FL+Stack /STK=18 /UG=Rn.34418 /LL=24797 /DEF=Rattus norvegicus Somatostatin (Sst), mRNA. /PROD=somatostatin /FL=gb:NM_012659.1 gb:M25890.1 NM_012659 somatostatin Sst 24797 NM_012659 0001101 // response to acid // inferred from expression pattern /// 0006972 // hyperosmotic response // inferred from expression pattern /// 0009408 // response to heat // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0030334 // regulation of cell migration // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0005179 // hormone activity // traceable author statement /// 0005179 // hormone activity // inferred from electronic annotation 1367763_at D13921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D13921.1 /DB_XREF=gi:220654 /GEN=acetoacetyl-CoA thiolase /FEA=FLmRNA /CNT=35 /TID=Rn.4054.1 /TIER=FL+Stack /STK=18 /UG=Rn.4054 /LL=25014 /DEF=Rat mitochondrial acetoacetyl-CoA thiolase mRNA, complete cds. /PROD=mitochondrial acetoacetyl-CoA thiolase /FL=gb:D13921.1 gb:NM_017075.1 D13921 acetyl-coenzyme A acetyltransferase 1 Acat1 25014 NM_017075 0001889 // liver development // inferred from expression pattern /// 0007420 // brain development // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0042594 // response to starvation // inferred from expression pattern /// 0051260 // protein homooligomerization // inferred from direct assay /// 0060612 // adipose tissue development // inferred from expression pattern /// 0072229 // metanephric proximal convoluted tubule development // inferred from expression pattern 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0003985 // acetyl-CoA C-acetyltransferase activity // inferred from direct assay /// 0003985 // acetyl-CoA C-acetyltransferase activity // not recorded /// 0003985 // acetyl-CoA C-acetyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from physical interaction 1367764_at NM_012923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012923.1 /DB_XREF=gi:6978620 /GEN=Ccng1 /FEA=FLmRNA /CNT=41 /TID=Rn.5834.1 /TIER=FL+Stack /STK=18 /UG=Rn.5834 /LL=25405 /DEF=Rattus norvegicus Cyclin G1 (Ccng1), mRNA. /PROD=cyclin G1 /FL=gb:NM_012923.1 NM_012923 cyclin G1 Ccng1 25405 NM_012923 0006949 // syncytium formation // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007095 // mitotic cell cycle G2/M transition DNA damage checkpoint // inferred from mutant phenotype /// 0007420 // brain development // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0016049 // cell growth // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0019904 // protein domain specific binding // inferred from direct assay 1367765_at NM_022534 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022534.1 /DB_XREF=gi:11968123 /GEN=Tcn2p /FEA=FLmRNA /CNT=30 /TID=Rn.1829.1 /TIER=FL+Stack /STK=18 /UG=Rn.1829 /LL=64365 /DEF=Rattus norvegicus transcobalamin II precursor (Tcn2p), mRNA. /PROD=transcobalamin II precursor /FL=gb:AF054810.1 gb:NM_022534.1 NM_022534 transcobalamin 2 Tcn2 64365 NM_022534 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006824 // cobalt ion transport // inferred from electronic annotation /// 0015889 // cobalamin transport // traceable author statement /// 0015889 // cobalamin transport // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay 0031419 // cobalamin binding // inferred from direct assay /// 0031419 // cobalamin binding // inferred from electronic annotation 1367766_at NM_031833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031833.1 /DB_XREF=gi:13929191 /GEN=Nme2 /FEA=FLmRNA /CNT=30 /TID=Rn.927.1 /TIER=FL+Stack /STK=18 /UG=Rn.927 /LL=83782 /DEF=Rattus norvegicus nucleoside diphosphate kinase (Nme2), mRNA. /PROD=nucleoside diphosphate kinase /FL=gb:NM_031833.1 gb:M91597.1 NM_031833 non-metastatic cells 2, protein (NM23B) expressed in Nme2 83782 NM_031833 0002762 // negative regulation of myeloid leukocyte differentiation // inferred from direct assay /// 0006165 // nucleoside diphosphate phosphorylation // inferred from direct assay /// 0006183 // GTP biosynthetic process // inferred from electronic annotation /// 0006228 // UTP biosynthetic process // inferred from electronic annotation /// 0006241 // CTP biosynthetic process // inferred from electronic annotation /// 0009117 // nucleotide metabolic process // inferred from electronic annotation /// 0009142 // nucleoside triphosphate biosynthetic process // not recorded /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0045618 // positive regulation of keratinocyte differentiation // not recorded /// 0045618 // positive regulation of keratinocyte differentiation // inferred from sequence or structural similarity /// 0045682 // regulation of epidermis development // not recorded /// 0045682 // regulation of epidermis development // inferred from sequence or structural similarity /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from sequence or structural similarity 0001726 // ruffle // not recorded /// 0001726 // ruffle // inferred from sequence or structural similarity /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005882 // intermediate filament // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004550 // nucleoside diphosphate kinase activity // inferred from direct assay /// 0004550 // nucleoside diphosphate kinase activity // not recorded /// 0004550 // nucleoside diphosphate kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367767_at NM_024386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024386.1 /DB_XREF=gi:13242292 /GEN=Hmgcl /FEA=FLmRNA /CNT=26 /TID=Rn.12297.1 /TIER=FL+Stack /STK=18 /UG=Rn.12297 /LL=79238 /DEF=Rattus norvegicus 3-hydroxy-3-methylglutaryl CoA lyase (Hmgcl), mRNA. /PROD=3-hydroxy-3-methylglutaryl CoA lyase /FL=gb:NM_024386.1 NM_024386 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase Hmgcl 79238 NM_024386 0001889 // liver development // inferred from expression pattern /// 0006637 // acyl-CoA metabolic process // inferred from direct assay /// 0007005 // mitochondrion organization // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0042594 // response to starvation // inferred from expression pattern /// 0046951 // ketone body biosynthetic process // inferred from direct assay /// 0070542 // response to fatty acid // inferred from expression pattern 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded 0000062 // acyl-CoA binding // inferred from physical interaction /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004419 // hydroxymethylglutaryl-CoA lyase activity // inferred from direct assay /// 0004419 // hydroxymethylglutaryl-CoA lyase activity // not recorded /// 0004419 // hydroxymethylglutaryl-CoA lyase activity // inferred from sequence or structural similarity /// 0004419 // hydroxymethylglutaryl-CoA lyase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0031406 // carboxylic acid binding // inferred from physical interaction /// 0046872 // metal ion binding // not recorded /// 0046872 // metal ion binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1367768_at NM_031655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031655.1 /DB_XREF=gi:14269567 /GEN=Lxn /FEA=FLmRNA /CNT=28 /TID=Rn.11404.1 /TIER=FL+Stack /STK=18 /UG=Rn.11404 /LL=59073 /DEF=Rattus norvegicus latexin (Lxn), mRNA. /PROD=latexin /FL=gb:NM_031655.1 gb:U40260.1 NM_031655 latexin Lxn 59073 NM_031655 0010951 // negative regulation of endopeptidase activity // not recorded /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // inferred from electronic annotation /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008191 // metalloendopeptidase inhibitor activity // inferred from electronic annotation /// 0008191 // metalloendopeptidase inhibitor activity // not recorded 1367769_at NM_053948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053948.1 /DB_XREF=gi:16758825 /GEN=Polr2g /FEA=FLmRNA /CNT=26 /TID=Rn.3020.1 /TIER=FL+Stack /STK=18 /UG=Rn.3020 /LL=117017 /DEF=Rattus norvegicus polymerase (RNA) II (DNA directed)polypeptide G (Polr2g), mRNA. /PROD=polymerase (RNA) II (DNA directed)polypeptide G /FL=gb:NM_053948.1 NM_053948 polymerase (RNA) II (DNA directed) polypeptide G Polr2g 117017 NM_053948 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0006915 // apoptosis // inferred from expression pattern /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005665 // DNA-directed RNA polymerase II, core complex // not recorded /// 0005665 // DNA-directed RNA polymerase II, core complex // inferred from sequence or structural similarity /// 0005665 // DNA-directed RNA polymerase II, core complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367770_at NM_053323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053323.1 /DB_XREF=gi:16758021 /GEN=Degs /FEA=FLmRNA /CNT=24 /TID=Rn.882.1 /TIER=FL+Stack /STK=18 /UG=Rn.882 /LL=58970 /DEF=Rattus norvegicus degenerative spermatocyte homolog (Drosophila) (Degs), mRNA. /PROD=degenerative spermatocyte homolog (Drosophila) /FL=gb:AY036902.1 gb:NM_053323.1 NM_053323 degenerative spermatocyte homolog 1, lipid desaturase (Drosophila) Degs1 58970 NM_053323 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation 1367771_at NM_031345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031345.1 /DB_XREF=gi:13786183 /GEN=Gilz /FEA=FLmRNA /CNT=29 /TID=Rn.6211.1 /TIER=FL+Stack /STK=18 /UG=Rn.6211 /LL=83514 /DEF=Rattus norvegicus glucocorticoid-induced leucine zipper (Gilz), mRNA. /PROD=glucocorticoid-induced leucine zipper /FL=gb:NM_031345.1 gb:AB025431.1 NM_031345 TSC22 domain family, member 3 Tsc22d3 83514 NM_031345 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006970 // response to osmotic stress // not recorded /// 0007589 // body fluid secretion // inferred from expression pattern 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1367772_at NM_031719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031719.1 /DB_XREF=gi:13929007 /GEN=Clns1a /FEA=FLmRNA /CNT=25 /TID=Rn.4089.1 /TIER=FL+Stack /STK=18 /UG=Rn.4089 /LL=65160 /DEF=Rattus norvegicus chloride channel, nucleotide-sensitive, 1A (Clns1a), mRNA. /PROD=chloride channel, nucleotide-sensitive, 1A /FL=gb:D13985.1 gb:NM_031719.1 gb:L26450.1 NM_031719 chloride channel, nucleotide-sensitive, 1A Clns1a 65160 NM_031719 0000387 // spliceosomal snRNP assembly // not recorded /// 0006821 // chloride transport // inferred from direct assay /// 0006821 // chloride transport // inferred from electronic annotation /// 0006884 // cell volume homeostasis // inferred from mutant phenotype /// 0006884 // cell volume homeostasis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367773_at NM_017307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017307.2 /DB_XREF=gi:17738290 /GEN=Slc25a1 /FEA=FLmRNA /CNT=23 /TID=Rn.8368.1 /TIER=FL+Stack /STK=18 /UG=Rn.8368 /LL=29743 /DEF=Rattus norvegicus solute carrier family 25 (mitochondrial carrier; citrate transporter) member 1 (Slc25a1), nuclear gene encoding mitochondrial protein, mRNA. /PROD=solute carrier family 25 (mitochondrial carrier;citrate transporter) precursor /FL=gb:NM_017307.2 NM_017307 solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1 Slc25a1 29743 NM_017307 0006810 // transport // inferred from electronic annotation /// 0006843 // mitochondrial citrate transport // traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015137 // citrate transmembrane transporter activity // traceable author statement 1367774_at NM_031509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031509.1 /DB_XREF=gi:13928687 /GEN=Gsta1 /FEA=FLmRNA /CNT=22 /TID=Rn.10460.1 /TIER=FL+Stack /STK=18 /UG=Rn.10460 /LL=24421 /DEF=Rattus norvegicus Glutathione-S-transferase, alpha type (Ya) (Gsta1), mRNA. /PROD=glutathione-S-transferase, alpha type (Ya) /FL=gb:NM_031509.1 gb:AF111160.1 gb:K01932.1 NM_031509 glutathione S-transferase A3 Gsta3 24421 NM_031509 0006749 // glutathione metabolic process // not recorded /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0042178 // xenobiotic catabolic process // inferred from direct assay /// 0042493 // response to drug // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005640 // nuclear outer membrane // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0004364 // glutathione transferase activity // inferred from direct assay /// 0004364 // glutathione transferase activity // not recorded /// 0004364 // glutathione transferase activity // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0043295 // glutathione binding // inferred from direct assay 1367775_at NM_012816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012816.1 /DB_XREF=gi:6981183 /GEN=Amacr /FEA=FLmRNA /CNT=21 /TID=Rn.2590.1 /TIER=FL+Stack /STK=18 /UG=Rn.2590 /LL=25284 /DEF=Rattus norvegicus alpha-methylacyl-CoA racemase (Amacr), mRNA. /PROD=alpha-methylacyl-CoA racemase /FL=gb:NM_012816.1 gb:U89905.1 NM_012816 alpha-methylacyl-CoA racemase Amacr 25284 NM_012816 0006699 // bile acid biosynthetic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0008206 // bile acid metabolic process // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008111 // alpha-methylacyl-CoA racemase activity // inferred from direct assay /// 0008111 // alpha-methylacyl-CoA racemase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1367776_at NM_019296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019296.1 /DB_XREF=gi:9506474 /GEN=Cdc2a /FEA=FLmRNA /CNT=26 /TID=Rn.6934.1 /TIER=FL+Stack /STK=18 /UG=Rn.6934 /LL=54237 /DEF=Rattus norvegicus Cell division cycle control protein 2 (Cdc2a), mRNA. /PROD=Cell division cycle control protein 2 /FL=gb:NM_019296.1 NM_019296 cyclin-dependent kinase 1 Cdk1 54237 NM_019296 0000080 // G1 phase of mitotic cell cycle // traceable author statement /// 0000278 // mitotic cell cycle // inferred from expression pattern /// 0006461 // protein complex assembly // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007095 // mitotic cell cycle G2/M transition DNA damage checkpoint // inferred from electronic annotation /// 0007095 // mitotic cell cycle G2/M transition DNA damage checkpoint // not recorded /// 0007569 // cell aging // inferred from direct assay /// 0009636 // response to toxin // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from direct assay /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014075 // response to amine stimulus // inferred from expression pattern /// 0014823 // response to activity // inferred from expression pattern /// 0030261 // chromosome condensation // inferred from mutant phenotype /// 0031100 // organ regeneration // inferred from mutant phenotype /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0033160 // positive regulation of protein import into nucleus, translocation // inferred from mutant phenotype /// 0034501 // protein localization to kinetochore // inferred from electronic annotation /// 0034501 // protein localization to kinetochore // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0045471 // response to ethanol // inferred from direct assay /// 0045740 // positive regulation of DNA replication // inferred from mutant phenotype /// 0045931 // positive regulation of mitotic cell cycle // inferred from mutant phenotype /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0046688 // response to copper ion // inferred from expression pattern /// 0048678 // response to axon injury // inferred from expression pattern /// 0051301 // cell division // inferred from electronic annotation /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0055015 // ventricular cardiac muscle cell development // inferred from expression pattern /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from mutant phenotype /// 0070301 // cellular response to hydrogen peroxide // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005876 // spindle microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded /// 0030496 // midbody // inferred from electronic annotation /// 0030496 // midbody // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from electronic annotation /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // not recorded /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030332 // cyclin binding // inferred from physical interaction /// 0030544 // Hsp70 protein binding // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // not recorded /// 0035173 // histone kinase activity // inferred from direct assay 1367777_at NM_057197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057197.1 /DB_XREF=gi:17105349 /GEN=Decr1 /FEA=FLmRNA /CNT=24 /TID=Rn.2854.1 /TIER=FL+Stack /STK=18 /UG=Rn.2854 /LL=117543 /DEF=Rattus norvegicus 2,4-dienoyl CoA reductase 1, mitochondrial (Decr1), mRNA. /PROD=2,4-dienoyl CoA reductase 1, mitochondrial /FL=gb:D00569.1 gb:NM_057197.1 NM_057197 2,4-dienoyl CoA reductase 1, mitochondrial Decr1 117543 NM_057197 0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0051289 // protein homotetramerization // inferred from electronic annotation /// 0051289 // protein homotetramerization // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008670 // 2,4-dienoyl-CoA reductase (NADPH) activity // not recorded /// 0008670 // 2,4-dienoyl-CoA reductase (NADPH) activity // traceable author statement /// 0008670 // 2,4-dienoyl-CoA reductase (NADPH) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0070402 // NADPH binding // inferred from electronic annotation /// 0070402 // NADPH binding // not recorded 1367778_at NM_019331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019331.1 /DB_XREF=gi:9506954 /GEN=Pace /FEA=FLmRNA /CNT=23 /TID=Rn.3220.1 /TIER=FL+Stack /STK=18 /UG=Rn.3220 /LL=54281 /DEF=Rattus norvegicus Paired basic amino acid cleaving enzyme (furin) (Pace), mRNA. /PROD=Paired basic amino acid cleaving enzyme (furin) /FL=gb:NM_019331.1 NM_019331 furin (paired basic amino acid cleaving enzyme) Furin 54281 NM_019331 0006465 // signal peptide processing // inferred from electronic annotation /// 0006465 // signal peptide processing // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0016485 // protein processing // inferred from direct assay /// 0016485 // protein processing // inferred from mutant phenotype /// 0016486 // peptide hormone processing // inferred from electronic annotation /// 0016486 // peptide hormone processing // not recorded /// 0019067 // viral assembly, maturation, egress, and release // inferred from electronic annotation /// 0019067 // viral assembly, maturation, egress, and release // not recorded /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0032455 // nerve growth factor processing // not recorded /// 0032804 // negative regulation of low-density lipoprotein receptor catabolic process // inferred from electronic annotation /// 0032804 // negative regulation of low-density lipoprotein receptor catabolic process // not recorded /// 0032902 // nerve growth factor production // inferred from electronic annotation /// 0032902 // nerve growth factor production // not recorded /// 0032904 // negative regulation of nerve growth factor production // not recorded /// 0032911 // negative regulation of transforming growth factor-beta1 production // inferred from electronic annotation /// 0032911 // negative regulation of transforming growth factor-beta1 production // not recorded /// 0032940 // secretion by cell // inferred from electronic annotation /// 0032940 // secretion by cell // not recorded /// 0042176 // regulation of protein catabolic process // inferred from electronic annotation /// 0042176 // regulation of protein catabolic process // not recorded /// 0043043 // peptide biosynthetic process // inferred from electronic annotation /// 0043043 // peptide biosynthetic process // not recorded /// 0051605 // protein maturation by peptide bond cleavage // not recorded /// 0051605 // protein maturation by peptide bond cleavage // inferred from electronic annotation /// 0052548 // regulation of endopeptidase activity // inferred from electronic annotation /// 0052548 // regulation of endopeptidase activity // not recorded 0005615 // extracellular space // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005796 // Golgi lumen // not recorded /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030140 // trans-Golgi network transport vesicle // inferred from electronic annotation /// 0030140 // trans-Golgi network transport vesicle // not recorded /// 0031985 // Golgi cisterna // inferred from direct assay /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded 0002020 // protease binding // inferred from electronic annotation /// 0002020 // protease binding // not recorded /// 0004175 // endopeptidase activity // not recorded /// 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from mutant phenotype /// 0004252 // serine-type endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from electronic annotation /// 0042277 // peptide binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048406 // nerve growth factor binding // inferred from electronic annotation /// 0048406 // nerve growth factor binding // not recorded 1367779_at NM_053959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053959.1 /DB_XREF=gi:16758845 /GEN=Bin1 /FEA=FLmRNA /CNT=23 /TID=Rn.17098.1 /TIER=FL+Stack /STK=18 /UG=Rn.17098 /LL=117028 /DEF=Rattus norvegicus myc box dependent interacting protein 1 (Bin1), mRNA. /PROD=myc box dependent interacting protein 1 /FL=gb:NM_053959.1 NM_053959 bridging integrator 1 Bin1 117028 NM_053959 0006897 // endocytosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030100 // regulation of endocytosis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042692 // muscle cell differentiation // inferred from electronic annotation /// 0042692 // muscle cell differentiation // not recorded /// 0043547 // positive regulation of GTPase activity // inferred from direct assay /// 0045807 // positive regulation of endocytosis // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0008021 // synaptic vesicle // inferred from direct assay /// 0043196 // varicosity // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay /// 0044300 // cerebellar mossy fiber // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0051020 // GTPase binding // inferred from physical interaction 1367780_at NM_022391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022391.1 /DB_XREF=gi:11761540 /GEN=Pttg1 /FEA=FLmRNA /CNT=21 /TID=Rn.271.1 /TIER=FL+Stack /STK=18 /UG=Rn.271 /LL=64193 /DEF=Rattus norvegicus Pituitary tumor transforming gene (Pttg1), mRNA. /PROD=pituitary tumor-transforming 1 /FL=gb:U73030.1 gb:NM_022391.1 NM_022391 pituitary tumor-transforming 1 Pttg1 64193 NM_022391 0001558 // regulation of cell growth // inferred from mutant phenotype /// 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0010951 // negative regulation of endopeptidase activity // not recorded /// 0045143 // homologous chromosome segregation // inferred from electronic annotation /// 0045143 // homologous chromosome segregation // not recorded /// 0051276 // chromosome organization // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0004869 // cysteine-type endopeptidase inhibitor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from physical interaction /// 0043022 // ribosome binding // inferred from physical interaction 1367781_at NM_022708 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022708.1 /DB_XREF=gi:12083676 /GEN=Pip /FEA=FLmRNA /CNT=20 /TID=Rn.9907.1 /TIER=FL+Stack /STK=18 /UG=Rn.9907 /LL=64673 /DEF=Rattus norvegicus prolactin-inducible protein (Pip), mRNA. /PROD=prolactin-inducible protein /FL=gb:AF054270.1 gb:NM_022708.1 NM_022708 prolactin induced protein Pip 64673 NM_022708 0005576 // extracellular region // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367782_at NM_012812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012812.1 /DB_XREF=gi:6978690 /GEN=Cox6a2 /FEA=FLmRNA /CNT=20 /TID=Rn.5119.1 /TIER=FL+Stack /STK=18 /UG=Rn.5119 /LL=25278 /DEF=Rattus norvegicus Cytochrome c oxidase subunit VIa polypeptide 2 (heart) (Cox6a2), mRNA. /PROD=cytochrome c oxidase subunit VIa polypeptide 2(heart) /FL=gb:NM_012812.1 NM_012812 cytochrome c oxidase, subunit VIa, polypeptide 2 Cox6a2 25278 NM_001109994 /// NM_012812 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005751 // mitochondrial respiratory chain complex IV // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0004129 // cytochrome-c oxidase activity // traceable author statement 1367783_at NM_022706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022706.1 /DB_XREF=gi:12083672 /GEN=Gabarapl2 /FEA=FLmRNA /CNT=29 /TID=Rn.64537.1 /TIER=FL+Stack /STK=18 /UG=Rn.64537 /LL=64670 /DEF=Rattus norvegicus GABA(A) receptor-associated protein like 2 (Gabarapl2), mRNA. /PROD=GABA(A) receptor-associated protein like 2 /FL=gb:AB003515.1 gb:NM_022706.1 NM_022706 GABA(A) receptor-associated protein like 2 Gabarapl2 64670 NM_022706 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0000139 // Golgi membrane // not recorded /// 0000421 // autophagic vacuole membrane // not recorded /// 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0005515 // protein binding // not recorded 1367784_a_at AF314657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF314657.1 /DB_XREF=gi:11127973 /FEA=mRNA /CNT=2 /TID=Rn.1780.3 /TIER=ConsEnd /STK=0 /UG=Rn.1780 /LL=24854 /UG_GENE=Clu /DEF=Rattus norvegicus clusterin mRNA, partial cds. /PROD=clusterin AF314657 clusterin Clu 24854 NM_053021 0006915 // apoptosis // traceable author statement /// 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0006950 // response to stress // inferred from expression pattern /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0009611 // response to wounding // inferred from expression pattern /// 0009615 // response to virus // inferred from electronic annotation /// 0009615 // response to virus // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031018 // endocrine pancreas development // inferred from mutant phenotype /// 0032463 // negative regulation of protein homooligomerization // inferred from electronic annotation /// 0032463 // negative regulation of protein homooligomerization // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // inferred from mutant phenotype /// 0048812 // neuron projection morphogenesis // inferred from mutant phenotype /// 0051788 // response to misfolded protein // inferred from electronic annotation /// 0051788 // response to misfolded protein // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016235 // aggresome // inferred from direct assay /// 0031012 // extracellular matrix // not recorded /// 0034366 // spherical high-density lipoprotein particle // inferred from electronic annotation /// 0034366 // spherical high-density lipoprotein particle // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0051787 // misfolded protein binding // inferred from electronic annotation /// 0051787 // misfolded protein binding // not recorded 1367785_at NM_031747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031747.1 /DB_XREF=gi:13929049 /GEN=Cnn1 /FEA=FLmRNA /CNT=23 /TID=Rn.31788.1 /TIER=FL+Stack /STK=18 /UG=Rn.31788 /LL=65204 /DEF=Rattus norvegicus Calponin 1 (Cnn1), mRNA. /PROD=calponin 1 /FL=gb:D14437.1 gb:NM_031747.1 NM_031747 calponin 1, basic, smooth muscle Cnn1 65204 NM_031747 0030036 // actin cytoskeleton organization // inferred from physical interaction /// 0031032 // actomyosin structure organization // inferred from electronic annotation 0005856 // cytoskeleton // not recorded 0003779 // actin binding // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation 1367786_at NM_080767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080767.1 /DB_XREF=gi:18158432 /GEN=Psmb8 /FEA=FLmRNA /CNT=23 /TID=Rn.29244.1 /TIER=FL+Stack /STK=18 /UG=Rn.29244 /DEF=Rattus norvegicus Proteasome (prosome, macropain) subunit, beta type, 8 (low molecular mass polypeptide 7) (Psmb8), mRNA. /PROD=low molecular mass polypeptide 7 /FL=gb:NM_080767.1 NM_080767 proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7) Psmb8 24968 NM_080767 0019882 // antigen processing and presentation // not recorded /// 0019882 // antigen processing and presentation // non-traceable author statement /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005839 // proteasome core complex // traceable author statement /// 0005839 // proteasome core complex // inferred from electronic annotation 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1367787_at NM_030844 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030844.1 /DB_XREF=gi:13540649 /GEN=Ica1 /FEA=FLmRNA /CNT=22 /TID=Rn.1379.1 /TIER=FL+Stack /STK=18 /UG=Rn.1379 /LL=81024 /DEF=Rattus norvegicus islet cell autoantigen 1, 69 kDa (Ica1), mRNA. /PROD=islet cell autoantigen 1, 69 kDa /FL=gb:NM_030844.1 gb:L20900.1 NM_030844 islet cell autoantigen 1 Ica1 81024 NM_030844 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0043496 // regulation of protein homodimerization activity // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from direct assay /// 0000139 // Golgi membrane // not recorded /// 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0030658 // transport vesicle membrane // inferred from electronic annotation /// 0030667 // secretory granule membrane // not recorded /// 0030667 // secretory granule membrane // inferred from sequence or structural similarity /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // not recorded /// 0030672 // synaptic vesicle membrane // inferred from sequence or structural similarity /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // not recorded /// 0019904 // protein domain specific binding // inferred from mutant phenotype 1367788_at NM_080584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080584.1 /DB_XREF=gi:18034788 /GEN=Phkg2 /FEA=FLmRNA /CNT=22 /TID=Rn.11153.1 /TIER=FL+Stack /STK=18 /UG=Rn.11153 /LL=140671 /DEF=Rattus norvegicus phosphorylase kinase, gamma 2 (testis) (Phkg2), mRNA. /PROD=phosphorylase kinase, gamma 2 (testis) /FL=gb:M73808.1 gb:NM_080584.1 NM_080584 phosphorylase kinase, gamma 2 (testis) Phkg2 140671 NM_080584 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from direct assay /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005978 // glycogen biosynthetic process // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005964 // phosphorylase kinase complex // inferred from direct assay /// 0005964 // phosphorylase kinase complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004689 // phosphorylase kinase activity // inferred from direct assay /// 0004689 // phosphorylase kinase activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from direct assay /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from direct assay 1367789_at NM_053580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053580.1 /DB_XREF=gi:16758351 /GEN=Slc27a1 /FEA=FLmRNA /CNT=19 /TID=Rn.1047.1 /TIER=FL+Stack /STK=18 /UG=Rn.1047 /LL=94172 /DEF=Rattus norvegicus fatty acid transport protein (Slc27a1), mRNA. /PROD=fatty acid transport protein /FL=gb:U89529.1 gb:NM_053580.1 NM_053580 solute carrier family 27 (fatty acid transporter), member 1 Slc27a1 94172 NM_053580 0001579 // medium-chain fatty acid transport // inferred from electronic annotation /// 0001579 // medium-chain fatty acid transport // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006646 // phosphatidylethanolamine biosynthetic process // inferred from electronic annotation /// 0006646 // phosphatidylethanolamine biosynthetic process // not recorded /// 0006654 // phosphatidic acid biosynthetic process // inferred from electronic annotation /// 0006654 // phosphatidic acid biosynthetic process // not recorded /// 0006655 // phosphatidylglycerol biosynthetic process // not recorded /// 0006655 // phosphatidylglycerol biosynthetic process // inferred from electronic annotation /// 0006656 // phosphatidylcholine biosynthetic process // inferred from electronic annotation /// 0006656 // phosphatidylcholine biosynthetic process // not recorded /// 0006659 // phosphatidylserine biosynthetic process // inferred from electronic annotation /// 0006659 // phosphatidylserine biosynthetic process // not recorded /// 0006661 // phosphatidylinositol biosynthetic process // inferred from electronic annotation /// 0006661 // phosphatidylinositol biosynthetic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009409 // response to cold // inferred from electronic annotation /// 0009409 // response to cold // not recorded /// 0015908 // fatty acid transport // not recorded /// 0015908 // fatty acid transport // inferred from electronic annotation /// 0015909 // long-chain fatty acid transport // inferred from electronic annotation /// 0015909 // long-chain fatty acid transport // not recorded /// 0031652 // positive regulation of heat generation // inferred from electronic annotation /// 0031652 // positive regulation of heat generation // not recorded /// 0032049 // cardiolipin biosynthetic process // inferred from electronic annotation /// 0032049 // cardiolipin biosynthetic process // not recorded /// 0032868 // response to insulin stimulus // inferred from electronic annotation /// 0032868 // response to insulin stimulus // not recorded /// 0071072 // negative regulation of phospholipid biosynthetic process // inferred from electronic annotation /// 0071072 // negative regulation of phospholipid biosynthetic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0015245 // fatty acid transporter activity // not recorded /// 0015245 // fatty acid transporter activity // non-traceable author statement /// 0015245 // fatty acid transporter activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0031957 // very long-chain fatty acid-CoA ligase activity // inferred from electronic annotation /// 0031957 // very long-chain fatty acid-CoA ligase activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1367790_at NM_022694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022694.1 /DB_XREF=gi:12083648 /GEN=U83883 /FEA=FLmRNA /CNT=22 /TID=Rn.36148.1 /TIER=FL+Stack /STK=18 /UG=Rn.36148 /LL=64635 /DEF=Rattus norvegicus p105 coactivator (U83883), mRNA. /PROD=p105 coactivator /FL=gb:U83883.1 gb:NM_022694.1 NM_022694 staphylococcal nuclease and tudor domain containing 1 Snd1 64635 NM_022694 0006350 // transcription // inferred from electronic annotation /// 0016246 // RNA interference // inferred from electronic annotation /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0016442 // RNA-induced silencing complex // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // traceable author statement /// 0004518 // nuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation 1367791_at NM_031645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031645.1 /DB_XREF=gi:13928889 /GEN=Ramp1 /FEA=FLmRNA /CNT=22 /TID=Rn.12265.1 /TIER=FL+Stack /STK=18 /UG=Rn.12265 /LL=58965 /DEF=Rattus norvegicus receptor (calcitonin) activity modifying protein 1 (Ramp1), mRNA. /PROD=receptor-activity modifying protein 1 /FL=gb:AB042887.1 gb:AF181550.1 gb:AB030942.1 gb:NM_031645.1 NM_031645 receptor (G protein-coupled) activity modifying protein 1 Ramp1 58965 NM_031645 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001664 // G-protein-coupled receptor binding // non-traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0015026 // coreceptor activity // inferred from direct assay /// 0015026 // coreceptor activity // inferred from mutant phenotype /// 0015026 // coreceptor activity // not recorded /// 0046982 // protein heterodimerization activity // non-traceable author statement 1367792_at NM_052808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_052808.1 /DB_XREF=gi:16258824 /GEN=Psp /FEA=FLmRNA /CNT=18 /TID=Rn.9766.1 /TIER=FL+Stack /STK=18 /UG=Rn.9766 /LL=50585 /DEF=Rattus norvegicus Parotid Secretory Protein (Psp), mRNA. /PROD=parotid secretory protein /FL=gb:M83209.1 gb:NM_052808.1 NM_052808 parotid secretory protein Psp 50585 NM_052808 0005576 // extracellular region // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay 0008289 // lipid binding // inferred from electronic annotation 1367793_at NM_024131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024131.1 /DB_XREF=gi:13162286 /GEN=Ddt /FEA=FLmRNA /CNT=27 /TID=Rn.3464.1 /TIER=FL+Stack /STK=17 /UG=Rn.3464 /LL=29318 /DEF=Rattus norvegicus D-dopachrome tautomerase (Ddt), mRNA. /PROD=D-dopachrome tautomerase /FL=gb:NM_024131.1 NM_024131 D-dopachrome tautomerase Ddt 29318 NM_024131 0006954 // inflammatory response // non-traceable author statement /// 0042438 // melanin biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004167 // dopachrome isomerase activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0016829 // lyase activity // inferred from electronic annotation /// 0033981 // D-dopachrome decarboxylase activity // inferred from electronic annotation 1367794_at NM_012488 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012488.1 /DB_XREF=gi:6978424 /GEN=A2m /FEA=FLmRNA /CNT=25 /TID=Rn.780.1 /TIER=FL+Stack /STK=17 /UG=Rn.780 /LL=24153 /DEF=Rattus norvegicus Alpha-2-macroglobulin (A2m), mRNA. /PROD=alpha-2-macroglobulin /FL=gb:NM_012488.1 gb:J02635.1 NM_012488 alpha-2-macroglobulin A2m 24153 NM_012488 0001869 // negative regulation of complement activation, lectin pathway // inferred from electronic annotation /// 0001869 // negative regulation of complement activation, lectin pathway // not recorded /// 0006953 // acute-phase response // inferred from expression pattern /// 0006953 // acute-phase response // inferred from electronic annotation /// 0006954 // inflammatory response // traceable author statement /// 0006954 // inflammatory response // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0009611 // response to wounding // traceable author statement /// 0010037 // response to carbon dioxide // inferred from expression pattern /// 0042221 // response to chemical stimulus // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // not recorded 0004866 // endopeptidase inhibitor activity // non-traceable author statement /// 0004866 // endopeptidase inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // not recorded /// 0005102 // receptor binding // traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded /// 0019838 // growth factor binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0019959 // interleukin-8 binding // inferred from electronic annotation /// 0019959 // interleukin-8 binding // not recorded /// 0019966 // interleukin-1 binding // inferred from electronic annotation /// 0019966 // interleukin-1 binding // not recorded /// 0030414 // peptidase inhibitor activity // traceable author statement /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0043120 // tumor necrosis factor binding // inferred from electronic annotation /// 0043120 // tumor necrosis factor binding // not recorded 1367795_at NM_019242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019242.1 /DB_XREF=gi:9506802 /GEN=Ifrd1 /FEA=FLmRNA /CNT=23 /TID=Rn.3723.1 /TIER=FL+Stack /STK=17 /UG=Rn.3723 /LL=29596 /DEF=Rattus norvegicus interferon-related developmental regulator 1 (Ifrd1), mRNA. /PROD=interferon-related developmental regulator 1 /FL=gb:NM_019242.1 gb:J04511.1 NM_019242 interferon-related developmental regulator 1 Ifrd1 29596 NM_019242 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007405 // neuroblast proliferation // inferred from expression pattern /// 0007527 // adult somatic muscle development // not recorded /// 0014009 // glial cell proliferation // inferred from expression pattern /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042692 // muscle cell differentiation // not recorded /// 0042692 // muscle cell differentiation // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1367796_at NM_030861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030861.1 /DB_XREF=gi:13540684 /GEN=Mgat1 /FEA=FLmRNA /CNT=30 /TID=Rn.2712.1 /TIER=FL+Stack /STK=17 /UG=Rn.2712 /LL=81519 /DEF=Rattus norvegicus N-acetylglucosaminyltransferase I (Mgat1), mRNA. /PROD=N-acetylglucosaminyltransferase I /FL=gb:NM_030861.1 gb:D16302.1 NM_030861 mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase Mgat1 81519 NM_030861 0006487 // protein N-linked glycosylation // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003827 // alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1367797_at AF130369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF130369.1 /DB_XREF=gi:6014460 /GEN=Men1 /FEA=FLmRNA /CNT=24 /TID=Rn.6775.1 /TIER=FL /STK=2 /UG=Rn.6775 /LL=29417 /DEF=Rattus norvegicus strain Wistar MEN1 tumor suppressor (Men1) mRNA, alternative splice product, complete cds. /PROD=MEN1 tumor suppressor /FL=gb:AF130370.1 gb:AF130369.1 gb:AB023400.1 gb:NM_019208.1 AF130369 multiple endocrine neoplasia 1 Men1 29417 NM_019208 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000165 // MAPKKK cascade // not recorded /// 0001503 // ossification // inferred from electronic annotation /// 0001503 // ossification // not recorded /// 0001776 // leukocyte homeostasis // inferred from electronic annotation /// 0001776 // leukocyte homeostasis // not recorded /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // not recorded /// 0002051 // osteoblast fate commitment // inferred from electronic annotation /// 0002051 // osteoblast fate commitment // not recorded /// 0002076 // osteoblast development // inferred from electronic annotation /// 0002076 // osteoblast development // not recorded /// 0006338 // chromatin remodeling // inferred from electronic annotation /// 0006338 // chromatin remodeling // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009411 // response to UV // inferred from electronic annotation /// 0009411 // response to UV // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0010332 // response to gamma radiation // inferred from electronic annotation /// 0010332 // response to gamma radiation // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016571 // histone methylation // not recorded /// 0016571 // histone methylation // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0031062 // positive regulation of histone methylation // inferred from electronic annotation /// 0031062 // positive regulation of histone methylation // not recorded /// 0032925 // regulation of activin receptor signaling pathway // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043280 // positive regulation of caspase activity // inferred from electronic annotation /// 0043280 // positive regulation of caspase activity // not recorded /// 0043433 // negative regulation of transcription factor activity // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0045597 // positive regulation of cell differentiation // not recorded /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045668 // negative regulation of osteoblast differentiation // inferred from electronic annotation /// 0045668 // negative regulation of osteoblast differentiation // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // not recorded /// 0045786 // negative regulation of cell cycle // not recorded /// 0045786 // negative regulation of cell cycle // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046329 // negative regulation of JNK cascade // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // not recorded /// 0046621 // negative regulation of organ growth // inferred from electronic annotation /// 0046621 // negative regulation of organ growth // not recorded /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0051781 // positive regulation of cell division // not recorded /// 0051974 // negative regulation of telomerase activity // inferred from electronic annotation /// 0051974 // negative regulation of telomerase activity // not recorded /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded /// 0060135 // maternal process involved in female pregnancy // inferred from electronic annotation /// 0060135 // maternal process involved in female pregnancy // not recorded 0000785 // chromatin // inferred from electronic annotation /// 0000785 // chromatin // not recorded /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0032154 // cleavage furrow // not recorded /// 0035097 // histone methyltransferase complex // inferred from electronic annotation /// 0035097 // histone methyltransferase complex // not recorded /// 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0000400 // four-way junction DNA binding // inferred from electronic annotation /// 0000400 // four-way junction DNA binding // not recorded /// 0000403 // Y-form DNA binding // inferred from electronic annotation /// 0000403 // Y-form DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded /// 0070412 // R-SMAD binding // inferred from electronic annotation /// 0070412 // R-SMAD binding // not recorded 1367798_at NM_017201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017201.1 /DB_XREF=gi:8392877 /GEN=Ahcy /FEA=FLmRNA /CNT=23 /TID=Rn.5878.1 /TIER=FL+Stack /STK=17 /UG=Rn.5878 /LL=29443 /DEF=Rattus norvegicus S-adenosylhomocysteine hydrolase (Ahcy), mRNA. /PROD=S-adenosylhomocysteine hydrolase /FL=gb:NM_017201.1 NM_017201 adenosylhomocysteinase Ahcy 29443 NM_017201 0001666 // response to hypoxia // inferred from expression pattern /// 0002439 // chronic inflammatory response to antigenic stimulus // inferred from mutant phenotype /// 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0019510 // S-adenosylhomocysteine catabolic process // inferred from direct assay /// 0019510 // S-adenosylhomocysteine catabolic process // not recorded /// 0042745 // circadian sleep/wake cycle // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0019717 // synaptosome // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004013 // adenosylhomocysteinase activity // inferred from direct assay /// 0004013 // adenosylhomocysteinase activity // not recorded /// 0004013 // adenosylhomocysteinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005507 // copper ion binding // not recorded /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030554 // adenyl nucleotide binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from direct assay /// 0043621 // protein self-association // not recorded /// 0051287 // NAD or NADH binding // inferred from direct assay 1367799_at NM_012660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012660.1 /DB_XREF=gi:6981595 /GEN=Stnl /FEA=FLmRNA /CNT=21 /TID=Rn.9764.1 /TIER=FL+Stack /STK=17 /UG=Rn.9764 /LL=24799 /DEF=Rattus norvegicus Statin-like protein (Stnl), mRNA. /PROD=statin-like protein /FL=gb:M62751.1 gb:NM_012660.1 NM_012660 eukaryotic translation elongation factor 1 alpha 2 Eef1a2 24799 NM_012660 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0006414 // translational elongation // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0010035 // response to inorganic substance // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005853 // eukaryotic translation elongation factor 1 complex // not recorded /// 0043025 // neuronal cell body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0003746 // translation elongation factor activity // not recorded /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1367800_at NM_013151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013151.1 /DB_XREF=gi:6981365 /GEN=Plat /FEA=FLmRNA /CNT=27 /TID=Rn.1002.1 /TIER=FL+Stack /STK=17 /UG=Rn.1002 /LL=25692 /DEF=Rattus norvegicus Plasminogen activator, tissue (Plat), mRNA. /PROD=plasminogen activator, tissue /FL=gb:NM_013151.1 gb:M23697.1 NM_013151 plasminogen activator, tissue Plat 25692 NM_013151 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0014909 // smooth muscle cell migration // inferred from electronic annotation /// 0014909 // smooth muscle cell migration // not recorded /// 0035249 // synaptic transmission, glutamatergic // inferred from mutant phenotype /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045861 // negative regulation of proteolysis // inferred from electronic annotation /// 0045861 // negative regulation of proteolysis // not recorded /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0048008 // platelet-derived growth factor receptor signaling pathway // not recorded /// 0048167 // regulation of synaptic plasticity // inferred from expression pattern /// 0048514 // blood vessel morphogenesis // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0030141 // stored secretory granule // inferred from electronic annotation /// 0030141 // stored secretory granule // not recorded /// 0031012 // extracellular matrix // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded /// 0045202 // synapse // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1367801_at NM_053596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053596.1 /DB_XREF=gi:16758379 /GEN=Ece1 /FEA=FLmRNA /CNT=24 /TID=Rn.7000.1 /TIER=FL+Stack /STK=17 /UG=Rn.7000 /LL=94204 /DEF=Rattus norvegicus Endothelin-converting enzyme 1 (Ece1), mRNA. /PROD=endothelin-converting enzyme 1 /FL=gb:D29683.1 gb:NM_053596.1 NM_053596 endothelin converting enzyme 1 Ece1 94204 NM_053596 0001666 // response to hypoxia // inferred from direct assay /// 0001921 // positive regulation of receptor recycling // inferred from electronic annotation /// 0001921 // positive regulation of receptor recycling // not recorded /// 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from mutant phenotype /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0010814 // substance P catabolic process // inferred from electronic annotation /// 0010814 // substance P catabolic process // not recorded /// 0010815 // bradykinin catabolic process // inferred from electronic annotation /// 0010815 // bradykinin catabolic process // not recorded /// 0010816 // calcitonin catabolic process // inferred from electronic annotation /// 0010816 // calcitonin catabolic process // not recorded /// 0016485 // protein processing // inferred from direct assay /// 0016486 // peptide hormone processing // not recorded /// 0016486 // peptide hormone processing // inferred from electronic annotation /// 0034959 // endothelin maturation // inferred from electronic annotation /// 0034959 // endothelin maturation // not recorded /// 0042447 // hormone catabolic process // not recorded /// 0042447 // hormone catabolic process // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // not recorded /// 0043583 // ear development // inferred from electronic annotation /// 0043583 // ear development // not recorded /// 0045745 // positive regulation of G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0051605 // protein maturation by peptide bond cleavage // not recorded /// 0051605 // protein maturation by peptide bond cleavage // inferred from electronic annotation /// 0060037 // pharyngeal system development // inferred from electronic annotation /// 0060037 // pharyngeal system development // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0030141 // stored secretory granule // inferred from direct assay /// 0031982 // vesicle // inferred from direct assay /// 0033093 // Weibel-Palade body // inferred from electronic annotation /// 0033093 // Weibel-Palade body // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0004175 // endopeptidase activity // not recorded /// 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1367802_at NM_019232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019232.1 /DB_XREF=gi:9507092 /GEN=Sgk /FEA=FLmRNA /CNT=22 /TID=Rn.4636.1 /TIER=FL+Stack /STK=17 /UG=Rn.4636 /LL=29517 /DEF=Rattus norvegicus serumglucocorticoid regulated kinase (Sgk), mRNA. /PROD=serumglucocorticoid regulated kinase /FL=gb:NM_019232.1 gb:L01624.1 NM_019232 serum/glucocorticoid regulated kinase 1 Sgk1 29517 NM_001193568 /// NM_001193569 /// NM_019232 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // traceable author statement /// 0006883 // cellular sodium ion homeostasis // inferred from direct assay /// 0006915 // apoptosis // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0007019 // microtubule depolymerization // inferred from direct assay /// 0007154 // cell communication // inferred from electronic annotation /// 0007616 // long-term memory // inferred from mutant phenotype /// 0008542 // visual learning // inferred from mutant phenotype /// 0010765 // positive regulation of sodium ion transport // inferred from mutant phenotype /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0030307 // positive regulation of cell growth // inferred from direct assay /// 0031115 // negative regulation of microtubule polymerization // inferred from direct assay /// 0032869 // cellular response to insulin stimulus // inferred from mutant phenotype /// 0032880 // regulation of protein localization // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0043402 // glucocorticoid mediated signaling pathway // inferred from mutant phenotype /// 0048812 // neuron projection morphogenesis // inferred from direct assay /// 0050775 // positive regulation of dendrite morphogenesis // inferred from mutant phenotype /// 0051726 // regulation of cell cycle // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation /// 0043423 // 3-phosphoinositide-dependent protein kinase binding // inferred from physical interaction /// 0048037 // cofactor binding // inferred from physical interaction /// 0048156 // tau protein binding // inferred from physical interaction 1367803_at NM_017361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017361.1 /DB_XREF=gi:8393854 /GEN=Nup54 /FEA=FLmRNA /CNT=20 /TID=Rn.11160.1 /TIER=FL+Stack /STK=17 /UG=Rn.11160 /LL=53372 /DEF=Rattus norvegicus nucleoporin p54 (Nup54), mRNA. /PROD=nucleoporin p54 /FL=gb:NM_017361.1 gb:U63840.1 NM_017361 nucleoporin 54 Nup54 53372 NM_017361 0006605 // protein targeting // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005643 // nuclear pore // inferred from direct assay /// 0005643 // nuclear pore // traceable author statement /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0005487 // nucleocytoplasmic transporter activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 1367804_at NM_017170 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017170.1 /DB_XREF=gi:8392902 /GEN=Apcs /FEA=FLmRNA /CNT=20 /TID=Rn.1902.1 /TIER=FL+Stack /STK=17 /UG=Rn.1902 /LL=29339 /DEF=Rattus norvegicus serum amyloid P-component (Apcs), mRNA. /PROD=serum amyloid P-component /FL=gb:M83177.1 gb:NM_017170.1 NM_017170 amyloid P component, serum Apcs 29339 NM_017170 0006461 // protein complex assembly // inferred from physical interaction /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded /// 0043234 // protein complex // inferred from direct assay 0005529 // sugar binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367805_at NM_012569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012569.1 /DB_XREF=gi:6980953 /GEN=Gls /FEA=FLmRNA /CNT=36 /TID=Rn.5762.1 /TIER=FL+Stack /STK=17 /UG=Rn.5762 /LL=24398 /DEF=Rattus norvegicus Glutaminase (Gls), mRNA. /PROD=glutaminase /FL=gb:NM_012569.1 gb:M22586.1 gb:M65150.1 NM_012569 glutaminase Gls 24398 NM_001109968 /// NM_012569 0002087 // regulation of respiratory gaseous exchange by neurological system process // not recorded /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0006543 // glutamine catabolic process // not recorded /// 0006543 // glutamine catabolic process // traceable author statement /// 0007268 // synaptic transmission // not recorded /// 0007610 // behavior // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation 0004359 // glutaminase activity // not recorded /// 0004359 // glutaminase activity // traceable author statement /// 0004359 // glutaminase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1367806_at M22586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M22586.1 /DB_XREF=gi:204361 /FEA=FLmRNA /CNT=36 /TID=Rn.5762.1 /TIER=FL /STK=1 /UG=Rn.5762 /LL=24398 /UG_GENE=Gls /UG_TITLE=Glutaminase /DEF=Rat glutaminase (Gls) mRNA, complete cds. /FL=gb:NM_012569.1 gb:M22586.1 gb:M65150.1 M22586 glutaminase Gls 24398 NM_001109968 /// NM_012569 0002087 // regulation of respiratory gaseous exchange by neurological system process // not recorded /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0006543 // glutamine catabolic process // not recorded /// 0006543 // glutamine catabolic process // traceable author statement /// 0007268 // synaptic transmission // not recorded /// 0007610 // behavior // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation 0004359 // glutaminase activity // not recorded /// 0004359 // glutaminase activity // traceable author statement /// 0004359 // glutaminase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1367807_at NM_053827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053827.1 /DB_XREF=gi:16758677 /GEN=Plod /FEA=FLmRNA /CNT=22 /TID=Rn.4445.1 /TIER=FL+Stack /STK=17 /UG=Rn.4445 /LL=116552 /DEF=Rattus norvegicus procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase, Ehlers-Danlos syndrome type VI) (Plod), mRNA. /PROD=procollagen-lysine, 2-oxoglutarate 5-dioxygenase(lysine hydroxylase, Ehlers-Danlos syndrome type VI) /FL=gb:NM_053827.1 gb:L25331.1 NM_053827 procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1 Plod1 116552 NM_053827 0001666 // response to hypoxia // inferred from expression pattern /// 0001666 // response to hypoxia // not recorded /// 0008544 // epidermis development // not recorded /// 0017185 // peptidyl-lysine hydroxylation // inferred from direct assay /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030867 // rough endoplasmic reticulum membrane // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0008198 // ferrous iron binding // inferred from mutant phenotype /// 0008475 // procollagen-lysine 5-dioxygenase activity // inferred from direct assay /// 0008475 // procollagen-lysine 5-dioxygenase activity // inferred from mutant phenotype /// 0008475 // procollagen-lysine 5-dioxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from mutant phenotype /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0042277 // peptide binding // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation 1367808_at NM_022541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022541.1 /DB_XREF=gi:11968133 /GEN=Ddp2 /FEA=FLmRNA /CNT=20 /TID=Rn.2017.1 /TIER=FL+Stack /STK=17 /UG=Rn.2017 /LL=64372 /DEF=Rattus norvegicus small zinc finger-like protein DDP2 (Ddp2), mRNA. /PROD=small zinc finger-like protein DDP2 /FL=gb:AF196315.1 gb:NM_022541.1 NM_022541 translocase of inner mitochondrial membrane 8 homolog b (yeast) Timm8b 64372 NM_022541 0006626 // protein targeting to mitochondrion // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0045039 // protein import into mitochondrial inner membrane // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0042719 // mitochondrial intermembrane space protein transporter complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1367809_at NM_017036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017036.1 /DB_XREF=gi:8394049 /GEN=Prlpa /FEA=FLmRNA /CNT=19 /TID=Rn.11230.1 /TIER=FL+Stack /STK=17 /UG=Rn.11230 /LL=24656 /DEF=Rattus norvegicus Prolactin-like protein A (Prlpa), mRNA. /PROD=prolactin-like protein A /FL=gb:NM_017036.1 gb:M13750.1 NM_017036 prolactin family 4, subfamily a, member 1 Prl4a1 24656 NM_017036 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation 1367810_at AI412218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412218 /DB_XREF=gi:4255722 /DB_XREF=EST240513 /CLONE=RBRDZ01 /FEA=FLmRNA /CNT=29 /TID=Rn.10336.1 /TIER=Stack /STK=6 /UG=Rn.10336 /LL=50690 /UG_GENE=CHOT1 /UG_TITLE=choline transporter /FL=gb:NM_017348.1 AI412218 solute carrier family 6 (neurotransmitter transporter, creatine), member 8 Slc6a8 50690 NM_017348 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0015881 // creatine transport // inferred from direct assay 0005886 // plasma membrane // traceable author statement /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005308 // creatine transporter activity // inferred from direct assay /// 0005309 // creatine:sodium symporter activity // inferred from direct assay /// 0005309 // creatine:sodium symporter activity // inferred from electronic annotation /// 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0015220 // choline transmembrane transporter activity // inferred from direct assay /// 0015220 // choline transmembrane transporter activity // non-traceable author statement /// 0015293 // symporter activity // inferred from electronic annotation 1367811_at NM_031620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031620.1 /DB_XREF=gi:13928849 /GEN=Phgdh /FEA=FLmRNA /CNT=20 /TID=Rn.6872.1 /TIER=FL+Stack /STK=17 /UG=Rn.6872 /LL=58835 /DEF=Rattus norvegicus 3-phosphoglycerate dehydrogenase (Phgdh), mRNA. /PROD=3-phosphoglycerate dehydrogenase /FL=gb:NM_031620.1 NM_031620 phosphoglycerate dehydrogenase Phgdh 58835 NM_031620 0006541 // glutamine metabolic process // not recorded /// 0006544 // glycine metabolic process // not recorded /// 0006563 // L-serine metabolic process // not recorded /// 0006564 // L-serine biosynthetic process // inferred from electronic annotation /// 0006566 // threonine metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009070 // serine family amino acid biosynthetic process // traceable author statement /// 0009448 // gamma-aminobutyric acid metabolic process // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0019530 // taurine metabolic process // not recorded /// 0021510 // spinal cord development // not recorded /// 0021782 // glial cell development // not recorded /// 0021915 // neural tube development // not recorded /// 0022008 // neurogenesis // not recorded /// 0022402 // cell cycle process // not recorded /// 0031175 // neuron projection development // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004617 // phosphoglycerate dehydrogenase activity // inferred from direct assay /// 0004617 // phosphoglycerate dehydrogenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation 1367812_at NM_019167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019167.1 /DB_XREF=gi:9507134 /GEN=Spnb3 /FEA=FLmRNA /CNT=18 /TID=Rn.20389.1 /TIER=FL+Stack /STK=17 /UG=Rn.20389 /LL=29211 /DEF=Rattus norvegicus beta-spectrin 3 (Spnb3), mRNA. /PROD=beta-spectrin 3 /FL=gb:AB008551.1 gb:AF225960.1 gb:AB001347.1 gb:NM_019167.1 NM_019167 spectrin, beta, non-erythrocytic 2 Sptbn2 29211 NM_019167 0016079 // synaptic vesicle exocytosis // inferred from physical interaction /// 0016081 // synaptic vesicle docking involved in exocytosis // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // not recorded /// 0017158 // regulation of calcium ion-dependent exocytosis // traceable author statement /// 0051693 // actin filament capping // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0008091 // spectrin // not recorded /// 0008091 // spectrin // traceable author statement /// 0008091 // spectrin // inferred from electronic annotation /// 0016363 // nuclear matrix // traceable author statement /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation 1367813_at NM_130403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130403.1 /DB_XREF=gi:18426819 /GEN=Ppp1r14a /FEA=FLmRNA /CNT=18 /TID=Rn.20515.1 /TIER=FL+Stack /STK=17 /UG=Rn.20515 /LL=114004 /DEF=Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 14a (Ppp1r14a), mRNA. /PROD=protein phosphatase 1, regulatory (inhibitor)subunit 14a /FL=gb:AF352572.1 gb:NM_130403.1 gb:AY050673.1 NM_130403 protein phosphatase 1, regulatory (inhibitor) subunit 14A Ppp1r14a 114004 NM_130403 0042325 // regulation of phosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004864 // phosphoprotein phosphatase inhibitor activity // traceable author statement /// 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367814_at M14137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M14137.1 /DB_XREF=gi:203040 /FEA=FLmRNA /CNT=77 /TID=Rn.8925.1 /TIER=FL+Stack /STK=16 /UG=Rn.8925 /LL=25650 /UG_GENE=Atp1b1 /UG_TITLE=ATPase Na+K+ transporting beta 1 polypeptide /DEF=Rat brain Na- ,K- ATPase beta subunit protein mRNA, complete cds. /FL=gb:M14137.1 gb:NM_013113.1 gb:J02701.1 M14137 ATPase, Na+/K+ transporting, beta 1 polypeptide Atp1b1 25650 NM_013113 0001666 // response to hypoxia // inferred from direct assay /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from direct assay /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0030001 // metal ion transport // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005890 // sodium:potassium-exchanging ATPase complex // inferred from direct assay /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay 0005391 // sodium:potassium-exchanging ATPase activity // inferred by curator /// 0005391 // sodium:potassium-exchanging ATPase activity // inferred from direct assay /// 0005391 // sodium:potassium-exchanging ATPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367815_at NM_130746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130746.1 /DB_XREF=gi:18543352 /GEN=Slc5a6 /FEA=FLmRNA /CNT=26 /TID=Rn.11105.1 /TIER=FL+Stack /STK=16 /UG=Rn.11105 /LL=170551 /DEF=Rattus norvegicus solute carrier family 5 (sodium-dependent vitamin transporter), member 6 (Slc5a6), mRNA. /PROD=solute carrier family 5 (sodium-dependentvitamin transporter), member 6 /FL=gb:AF081205.1 gb:AF081204.2 gb:AF026554.1 gb:NM_130746.1 NM_130746 solute carrier family 5 (sodium-dependent vitamin transporter), member 6 Slc5a6 170551 NM_130746 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0015878 // biotin transport // inferred from direct assay /// 0015887 // pantothenate transmembrane transport // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0012506 // vesicle membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0008523 // sodium-dependent multivitamin transmembrane transporter activity // inferred from direct assay /// 0015293 // symporter activity // inferred from electronic annotation 1367816_at NM_133621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133621.1 /DB_XREF=gi:19424343 /GEN=GIIg15b /FEA=FLmRNA /CNT=30 /TID=Rn.2989.1 /TIER=FL+Stack /STK=16 /UG=Rn.2989 /DEF=Rattus norvegicus global ischemia induced protein GIIG15B (GIIg15b), mRNA. /PROD=global ischemia induced protein GIIG15B /FL=gb:AF474162.1 gb:NM_133621.1 NM_133621 HOP homeobox Hopx 171160 NM_133621 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001829 // trophectodermal cell differentiation // inferred from electronic annotation /// 0001829 // trophectodermal cell differentiation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0008016 // regulation of heart contraction // not recorded /// 0016575 // histone deacetylation // inferred from electronic annotation /// 0016575 // histone deacetylation // not recorded /// 0043415 // positive regulation of skeletal muscle tissue regeneration // inferred from electronic annotation /// 0043415 // positive regulation of skeletal muscle tissue regeneration // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048286 // lung alveolus development // not recorded /// 0051155 // positive regulation of striated muscle cell differentiation // inferred from electronic annotation /// 0051155 // positive regulation of striated muscle cell differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1367817_at NM_053707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053707.1 /DB_XREF=gi:16758527 /GEN=Hdgf /FEA=FLmRNA /CNT=35 /TID=Rn.860.1 /TIER=FL+Stack /STK=16 /UG=Rn.860 /LL=114499 /DEF=Rattus norvegicus hepatoma-derived growth factor (Hdgf), mRNA. /PROD=hepatoma-derived growth factor /FL=gb:AF389348.1 gb:NM_053707.1 NM_053707 hepatoma-derived growth factor Hdgf 114499 NM_053707 0006350 // transcription // inferred from electronic annotation /// 0009987 // cellular process // inferred from electronic annotation /// 0009987 // cellular process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation 1367818_at NM_019187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019187.1 /DB_XREF=gi:9506504 /GEN=Coq3 /FEA=FLmRNA /CNT=24 /TID=Rn.3824.1 /TIER=FL+Stack /STK=16 /UG=Rn.3824 /LL=29309 /DEF=Rattus norvegicus Coenzyme Q (ubiquinone) (Coq3), mRNA. /PROD=Coenzyme Q (ubiquinone) /FL=gb:NM_019187.1 gb:L20427.1 NM_019187 coenzyme Q3 homolog, methyltransferase (S. cerevisiae) Coq3 29309 NM_019187 0006071 // glycerol metabolic process // inferred from electronic annotation /// 0006071 // glycerol metabolic process // not recorded /// 0006744 // ubiquinone biosynthetic process // inferred from mutant phenotype /// 0006744 // ubiquinone biosynthetic process // not recorded /// 0006744 // ubiquinone biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0004395 // hexaprenyldihydroxybenzoate methyltransferase activity // inferred from mutant phenotype /// 0004395 // hexaprenyldihydroxybenzoate methyltransferase activity // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008425 // 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1367819_at NM_013177 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013177.1 /DB_XREF=gi:6980971 /GEN=Got2 /FEA=FLmRNA /CNT=33 /TID=Rn.3628.1 /TIER=FL+Stack /STK=16 /UG=Rn.3628 /LL=25721 /DEF=Rattus norvegicus Glutamate oxaloacetate transaminase 2, mitochondrial (aspartate aminotransferase 2) (Got2), mRNA. /PROD=glutamate oxaloacetate transaminase 2,mitochondrial (aspartate aminotransferase 2) /FL=gb:NM_013177.1 gb:M18467.1 NM_013177 glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) Got2 25721 NM_013177 0006103 // 2-oxoglutarate metabolic process // inferred from sequence or structural similarity /// 0006107 // oxaloacetate metabolic process // not recorded /// 0006520 // cellular amino acid metabolic process // inferred from direct assay /// 0006520 // cellular amino acid metabolic process // traceable author statement /// 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006531 // aspartate metabolic process // inferred from mutant phenotype /// 0006531 // aspartate metabolic process // inferred from sequence or structural similarity /// 0006532 // aspartate biosynthetic process // not recorded /// 0006533 // aspartate catabolic process // not recorded /// 0006536 // glutamate metabolic process // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0015908 // fatty acid transport // not recorded /// 0015908 // fatty acid transport // traceable author statement /// 0019550 // glutamate catabolic process to aspartate // not recorded /// 0019551 // glutamate catabolic process to 2-oxoglutarate // not recorded /// 0043648 // dicarboxylic acid metabolic process // inferred from direct assay /// 0045471 // response to ethanol // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0043204 // perikaryon // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004069 // L-aspartate:2-oxoglutarate aminotransferase activity // inferred from direct assay /// 0004069 // L-aspartate:2-oxoglutarate aminotransferase activity // inferred from mutant phenotype /// 0004069 // L-aspartate:2-oxoglutarate aminotransferase activity // not recorded /// 0004069 // L-aspartate:2-oxoglutarate aminotransferase activity // inferred from sequence or structural similarity /// 0004069 // L-aspartate:2-oxoglutarate aminotransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005543 // phospholipid binding // inferred from direct assay /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from direct assay /// 0030170 // pyridoxal phosphate binding // inferred from direct assay /// 0030170 // pyridoxal phosphate binding // inferred from mutant phenotype /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0031406 // carboxylic acid binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from mutant phenotype 1367820_at NM_053631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053631.1 /DB_XREF=gi:16758437 /GEN=Bcrp1 /FEA=FLmRNA /CNT=28 /TID=Rn.19921.1 /TIER=FL+Stack /STK=16 /UG=Rn.19921 /LL=114087 /DEF=Rattus norvegicus Breakpoint cluster region protein, uterine leiomyoma, 1; barrier to autointegration factor (Bcrp1), mRNA. /PROD=Breakpoint cluster region protein, uterineleiomyoma, 1; barrier to autointegration factor /FL=gb:NM_053631.1 gb:AB024333.1 NM_053631 barrier to autointegration factor 1 Banf1 114087 NM_053631 0015074 // DNA integration // inferred from electronic annotation /// 0015074 // DNA integration // not recorded /// 0019047 // provirus integration // not recorded /// 0019059 // initiation of viral infection // not recorded /// 0050792 // regulation of viral reproduction // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded 1367821_a_at AI412446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412446 /DB_XREF=gi:4255950 /DB_XREF=EST240745 /CLONE=RBRDO47 /FEA=FLmRNA /CNT=38 /TID=Rn.11281.1 /TIER=Stack /STK=9 /UG=Rn.11281 /LL=25398 /UG_GENE=Cacna1a /UG_TITLE=Calcium channel alpha 1A /FL=gb:M64373.1 gb:NM_012918.1 AI412446 calcium channel, voltage-dependent, P/Q type, alpha 1A subunit Cacna1a 25398 NM_012918 0000096 // sulfur amino acid metabolic process // inferred from electronic annotation /// 0000096 // sulfur amino acid metabolic process // not recorded /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from mutant phenotype /// 0006816 // calcium ion transport // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from sequence or structural similarity /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // not recorded /// 0007268 // synaptic transmission // inferred from mutant phenotype /// 0007268 // synaptic transmission // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007270 // nerve-nerve synaptic transmission // not recorded /// 0007270 // nerve-nerve synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0007416 // synapse assembly // inferred from electronic annotation /// 0007416 // synapse assembly // not recorded /// 0007628 // adult walking behavior // inferred from electronic annotation /// 0007628 // adult walking behavior // not recorded /// 0008219 // cell death // inferred from electronic annotation /// 0008219 // cell death // not recorded /// 0014051 // gamma-aminobutyric acid secretion // inferred from electronic annotation /// 0014051 // gamma-aminobutyric acid secretion // not recorded /// 0014056 // regulation of acetylcholine secretion // inferred from electronic annotation /// 0014056 // regulation of acetylcholine secretion // not recorded /// 0016049 // cell growth // inferred from electronic annotation /// 0016049 // cell growth // not recorded /// 0017156 // calcium ion-dependent exocytosis // not recorded /// 0017156 // calcium ion-dependent exocytosis // inferred from electronic annotation /// 0017158 // regulation of calcium ion-dependent exocytosis // inferred from electronic annotation /// 0017158 // regulation of calcium ion-dependent exocytosis // not recorded /// 0019226 // transmission of nerve impulse // not recorded /// 0019226 // transmission of nerve impulse // inferred from electronic annotation /// 0021522 // spinal cord motor neuron differentiation // inferred from electronic annotation /// 0021522 // spinal cord motor neuron differentiation // not recorded /// 0021590 // cerebellum maturation // inferred from electronic annotation /// 0021590 // cerebellum maturation // not recorded /// 0021679 // cerebellar molecular layer development // inferred from electronic annotation /// 0021679 // cerebellar molecular layer development // not recorded /// 0021680 // cerebellar Purkinje cell layer development // inferred from electronic annotation /// 0021680 // cerebellar Purkinje cell layer development // not recorded /// 0021702 // cerebellar Purkinje cell differentiation // inferred from electronic annotation /// 0021702 // cerebellar Purkinje cell differentiation // not recorded /// 0021750 // vestibular nucleus development // inferred from electronic annotation /// 0021750 // vestibular nucleus development // not recorded /// 0021953 // central nervous system neuron differentiation // not recorded /// 0021953 // central nervous system neuron differentiation // inferred from electronic annotation /// 0030644 // cellular chloride ion homeostasis // inferred from electronic annotation /// 0030644 // cellular chloride ion homeostasis // not recorded /// 0032353 // negative regulation of hormone biosynthetic process // inferred from electronic annotation /// 0032353 // negative regulation of hormone biosynthetic process // not recorded /// 0035249 // synaptic transmission, glutamatergic // inferred from electronic annotation /// 0035249 // synaptic transmission, glutamatergic // not recorded /// 0042133 // neurotransmitter metabolic process // inferred from electronic annotation /// 0042133 // neurotransmitter metabolic process // not recorded /// 0042391 // regulation of membrane potential // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042403 // thyroid hormone metabolic process // not recorded /// 0042445 // hormone metabolic process // inferred from electronic annotation /// 0042445 // hormone metabolic process // not recorded /// 0043113 // receptor clustering // inferred from electronic annotation /// 0043113 // receptor clustering // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0048265 // response to pain // not recorded /// 0048265 // response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // not recorded /// 0048791 // calcium ion-dependent exocytosis of neurotransmitter // inferred from electronic annotation /// 0048791 // calcium ion-dependent exocytosis of neurotransmitter // not recorded /// 0048813 // dendrite morphogenesis // inferred from electronic annotation /// 0048813 // dendrite morphogenesis // not recorded /// 0050770 // regulation of axonogenesis // inferred from electronic annotation /// 0050770 // regulation of axonogenesis // not recorded /// 0050877 // neurological system process // not recorded /// 0050877 // neurological system process // inferred from electronic annotation /// 0050883 // musculoskeletal movement, spinal reflex action // inferred from electronic annotation /// 0050883 // musculoskeletal movement, spinal reflex action // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0050905 // neuromuscular process // not recorded /// 0050905 // neuromuscular process // inferred from electronic annotation /// 0051899 // membrane depolarization // inferred from electronic annotation /// 0051899 // membrane depolarization // not recorded /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0051932 // synaptic transmission, GABAergic // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060024 // rhythmic synaptic transmission // inferred from electronic annotation /// 0060024 // rhythmic synaptic transmission // not recorded /// 0070588 // calcium ion transmembrane transport // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // inferred from direct assay /// 0005891 // voltage-gated calcium channel complex // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // not recorded /// 0005891 // voltage-gated calcium channel complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0042995 // cell projection // not recorded /// 0043025 // neuronal cell body // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043204 // perikaryon // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from direct assay /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // not recorded /// 0005245 // voltage-gated calcium channel activity // inferred from sequence or structural similarity /// 0005245 // voltage-gated calcium channel activity // traceable author statement /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from direct assay /// 0008331 // high voltage-gated calcium channel activity // inferred from electronic annotation /// 0008331 // high voltage-gated calcium channel activity // not recorded /// 0019905 // syntaxin binding // inferred from electronic annotation /// 0019905 // syntaxin binding // not recorded 1367822_at BF400631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400631 /DB_XREF=gi:11388606 /DB_XREF=UI-R-CA0-bhd-f-08-0-UI.s1 /CLONE=UI-R-CA0-bhd-f-08-0-UI /FEA=FLmRNA /CNT=38 /TID=Rn.11281.1 /TIER=Stack /STK=6 /UG=Rn.11281 /LL=25398 /UG_GENE=Cacna1a /UG_TITLE=Calcium channel alpha 1A /FL=gb:M64373.1 gb:NM_012918.1 BF400631 calcium channel, voltage-dependent, P/Q type, alpha 1A subunit Cacna1a 25398 NM_012918 0000096 // sulfur amino acid metabolic process // inferred from electronic annotation /// 0000096 // sulfur amino acid metabolic process // not recorded /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from mutant phenotype /// 0006816 // calcium ion transport // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from sequence or structural similarity /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // not recorded /// 0007268 // synaptic transmission // inferred from mutant phenotype /// 0007268 // synaptic transmission // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007270 // nerve-nerve synaptic transmission // not recorded /// 0007270 // nerve-nerve synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0007416 // synapse assembly // inferred from electronic annotation /// 0007416 // synapse assembly // not recorded /// 0007628 // adult walking behavior // inferred from electronic annotation /// 0007628 // adult walking behavior // not recorded /// 0008219 // cell death // inferred from electronic annotation /// 0008219 // cell death // not recorded /// 0014051 // gamma-aminobutyric acid secretion // inferred from electronic annotation /// 0014051 // gamma-aminobutyric acid secretion // not recorded /// 0014056 // regulation of acetylcholine secretion // inferred from electronic annotation /// 0014056 // regulation of acetylcholine secretion // not recorded /// 0016049 // cell growth // inferred from electronic annotation /// 0016049 // cell growth // not recorded /// 0017156 // calcium ion-dependent exocytosis // not recorded /// 0017156 // calcium ion-dependent exocytosis // inferred from electronic annotation /// 0017158 // regulation of calcium ion-dependent exocytosis // inferred from electronic annotation /// 0017158 // regulation of calcium ion-dependent exocytosis // not recorded /// 0019226 // transmission of nerve impulse // not recorded /// 0019226 // transmission of nerve impulse // inferred from electronic annotation /// 0021522 // spinal cord motor neuron differentiation // inferred from electronic annotation /// 0021522 // spinal cord motor neuron differentiation // not recorded /// 0021590 // cerebellum maturation // inferred from electronic annotation /// 0021590 // cerebellum maturation // not recorded /// 0021679 // cerebellar molecular layer development // inferred from electronic annotation /// 0021679 // cerebellar molecular layer development // not recorded /// 0021680 // cerebellar Purkinje cell layer development // inferred from electronic annotation /// 0021680 // cerebellar Purkinje cell layer development // not recorded /// 0021702 // cerebellar Purkinje cell differentiation // inferred from electronic annotation /// 0021702 // cerebellar Purkinje cell differentiation // not recorded /// 0021750 // vestibular nucleus development // inferred from electronic annotation /// 0021750 // vestibular nucleus development // not recorded /// 0021953 // central nervous system neuron differentiation // not recorded /// 0021953 // central nervous system neuron differentiation // inferred from electronic annotation /// 0030644 // cellular chloride ion homeostasis // inferred from electronic annotation /// 0030644 // cellular chloride ion homeostasis // not recorded /// 0032353 // negative regulation of hormone biosynthetic process // inferred from electronic annotation /// 0032353 // negative regulation of hormone biosynthetic process // not recorded /// 0035249 // synaptic transmission, glutamatergic // inferred from electronic annotation /// 0035249 // synaptic transmission, glutamatergic // not recorded /// 0042133 // neurotransmitter metabolic process // inferred from electronic annotation /// 0042133 // neurotransmitter metabolic process // not recorded /// 0042391 // regulation of membrane potential // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042403 // thyroid hormone metabolic process // not recorded /// 0042445 // hormone metabolic process // inferred from electronic annotation /// 0042445 // hormone metabolic process // not recorded /// 0043113 // receptor clustering // inferred from electronic annotation /// 0043113 // receptor clustering // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0048265 // response to pain // not recorded /// 0048265 // response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // not recorded /// 0048791 // calcium ion-dependent exocytosis of neurotransmitter // inferred from electronic annotation /// 0048791 // calcium ion-dependent exocytosis of neurotransmitter // not recorded /// 0048813 // dendrite morphogenesis // inferred from electronic annotation /// 0048813 // dendrite morphogenesis // not recorded /// 0050770 // regulation of axonogenesis // inferred from electronic annotation /// 0050770 // regulation of axonogenesis // not recorded /// 0050877 // neurological system process // not recorded /// 0050877 // neurological system process // inferred from electronic annotation /// 0050883 // musculoskeletal movement, spinal reflex action // inferred from electronic annotation /// 0050883 // musculoskeletal movement, spinal reflex action // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0050905 // neuromuscular process // not recorded /// 0050905 // neuromuscular process // inferred from electronic annotation /// 0051899 // membrane depolarization // inferred from electronic annotation /// 0051899 // membrane depolarization // not recorded /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0051932 // synaptic transmission, GABAergic // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060024 // rhythmic synaptic transmission // inferred from electronic annotation /// 0060024 // rhythmic synaptic transmission // not recorded /// 0070588 // calcium ion transmembrane transport // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // inferred from direct assay /// 0005891 // voltage-gated calcium channel complex // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // not recorded /// 0005891 // voltage-gated calcium channel complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0042995 // cell projection // not recorded /// 0043025 // neuronal cell body // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043204 // perikaryon // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from direct assay /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // not recorded /// 0005245 // voltage-gated calcium channel activity // inferred from sequence or structural similarity /// 0005245 // voltage-gated calcium channel activity // traceable author statement /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from direct assay /// 0008331 // high voltage-gated calcium channel activity // inferred from electronic annotation /// 0008331 // high voltage-gated calcium channel activity // not recorded /// 0019905 // syntaxin binding // inferred from electronic annotation /// 0019905 // syntaxin binding // not recorded 1367823_at BF523128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523128 /DB_XREF=gi:11631095 /DB_XREF=UI-R-C3-sj-h-04-0-UI.r1 /CLONE=UI-R-C3-sj-h-04-0-UI /FEA=FLmRNA /CNT=27 /TID=Rn.10161.1 /TIER=ConsEnd /STK=0 /UG=Rn.10161 /LL=29543 /UG_GENE=Timp2 /UG_TITLE=tissue inhibitor of metalloproteinase 2 /FL=gb:L31884.1 gb:U14526.1 gb:NM_021989.1 BF523128 TIMP metallopeptidase inhibitor 2 Timp2 29543 NM_021989 0007283 // spermatogenesis // non-traceable author statement /// 0007417 // central nervous system development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010951 // negative regulation of endopeptidase activity // not recorded /// 0030814 // regulation of cAMP metabolic process // not recorded /// 0032487 // regulation of Rap protein signal transduction // inferred from direct assay /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043408 // regulation of MAPKKK cascade // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from direct assay /// 0045664 // regulation of neuron differentiation // not recorded /// 0045666 // positive regulation of neuron differentiation // inferred from direct assay /// 0045762 // positive regulation of adenylate cyclase activity // inferred from mutant phenotype /// 0045861 // negative regulation of proteolysis // inferred from mutant phenotype /// 0045930 // negative regulation of mitotic cell cycle // inferred from direct assay /// 0046580 // negative regulation of Ras protein signal transduction // inferred from direct assay /// 0050790 // regulation of catalytic activity // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0030426 // growth cone // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from physical interaction /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008047 // enzyme activator activity // not recorded /// 0008191 // metalloendopeptidase inhibitor activity // inferred from electronic annotation /// 0008191 // metalloendopeptidase inhibitor activity // inferred from mutant phenotype /// 0008191 // metalloendopeptidase inhibitor activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1367824_at NM_012847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012847.1 /DB_XREF=gi:6978848 /GEN=Fnta /FEA=FLmRNA /CNT=27 /TID=Rn.5990.1 /TIER=FL+Stack /STK=16 /UG=Rn.5990 /LL=25318 /DEF=Rattus norvegicus Farnesyltransferase, subunit alpha (Fnta), mRNA. /PROD=farnesyltransferase, subunit alpha /FL=gb:M81225.1 gb:NM_012847.1 NM_012847 farnesyltransferase, CAAX box, alpha Fnta 25318 NM_012847 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0010035 // response to inorganic substance // inferred from mutant phenotype /// 0010469 // regulation of receptor activity // not recorded /// 0014070 // response to organic cyclic substance // inferred from mutant phenotype /// 0018343 // protein farnesylation // not recorded /// 0034097 // response to cytokine stimulus // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0045213 // neurotransmitter receptor metabolic process // inferred from electronic annotation /// 0045213 // neurotransmitter receptor metabolic process // not recorded /// 0045787 // positive regulation of cell cycle // inferred from mutant phenotype /// 0051773 // positive regulation of nitric-oxide synthase 2 biosynthetic process // inferred from mutant phenotype /// 0051774 // negative regulation of nitric-oxide synthase 2 biosynthetic process // inferred from mutant phenotype /// 0051789 // response to protein stimulus // inferred from direct assay /// 0090044 // positive regulation of tubulin deacetylation // inferred from electronic annotation /// 0090044 // positive regulation of tubulin deacetylation // not recorded /// 0090045 // positive regulation of deacetylase activity // inferred from electronic annotation /// 0090045 // positive regulation of deacetylase activity // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005875 // microtubule associated complex // inferred from electronic annotation /// 0005875 // microtubule associated complex // not recorded /// 0005953 // CAAX-protein geranylgeranyltransferase complex // inferred from direct assay 0004659 // prenyltransferase activity // inferred from electronic annotation /// 0004660 // protein farnesyltransferase activity // inferred from direct assay /// 0004660 // protein farnesyltransferase activity // not recorded /// 0004660 // protein farnesyltransferase activity // inferred from electronic annotation /// 0004662 // CAAX-protein geranylgeranyltransferase activity // inferred from direct assay /// 0004662 // CAAX-protein geranylgeranyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0008144 // drug binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from direct assay /// 0008318 // protein prenyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019840 // isoprenoid binding // inferred from direct assay /// 0030548 // acetylcholine receptor regulator activity // inferred from electronic annotation /// 0030548 // acetylcholine receptor regulator activity // not recorded /// 0042277 // peptide binding // inferred from direct assay /// 0043014 // alpha-tubulin binding // inferred from electronic annotation /// 0043014 // alpha-tubulin binding // not recorded 1367825_at NM_019250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019250.1 /DB_XREF=gi:9507026 /GEN=Ralgds /FEA=FLmRNA /CNT=23 /TID=Rn.40174.1 /TIER=FL+Stack /STK=16 /UG=Rn.40174 /LL=29622 /DEF=Rattus norvegicus ral guanine nucleotide dissociation stimulator (Ralgds), mRNA. /PROD=ral guanine nucleotide dissociation stimulator /FL=gb:L07925.1 gb:NM_019250.1 NM_019250 ral guanine nucleotide dissociation stimulator Ralgds 29622 NM_019250 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005083 // small GTPase regulator activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0008321 // Ral guanyl-nucleotide exchange factor activity // traceable author statement 1367826_at NM_031789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031789.1 /DB_XREF=gi:13929117 /GEN=Nfe2l2 /FEA=FLmRNA /CNT=29 /TID=Rn.10867.1 /TIER=FL+Stack /STK=16 /UG=Rn.10867 /LL=83619 /DEF=Rattus norvegicus NF-E2-related factor 2 (Nfe2l2), mRNA. /PROD=NF-E2-related factor 2 /FL=gb:AF037350.1 gb:NM_031789.1 NM_031789 nuclear factor, erythroid derived 2, like 2 Nfe2l2 83619 NM_031789 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045995 // regulation of embryonic development // inferred from electronic annotation /// 0045995 // regulation of embryonic development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0030528 // transcription regulator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1367827_at NM_017040 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017040.1 /DB_XREF=gi:8394020 /GEN=Ppp2cb /FEA=FLmRNA /CNT=28 /TID=Rn.977.1 /TIER=FL+Stack /STK=16 /UG=Rn.977 /LL=24673 /DEF=Rattus norvegicus Protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform (Ppp2cb), mRNA. /PROD=protein phosphatase 2 (formerly 2A), catalyticsubunit, beta isoform /FL=gb:M23591.1 gb:NM_017040.1 NM_017040 protein phosphatase 2, catalytic subunit, beta isoform Ppp2cb 24673 NM_017040 0006470 // protein dephosphorylation // inferred from direct assay /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0042221 // response to chemical stimulus // not recorded /// 0042221 // response to chemical stimulus // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0046580 // negative regulation of Ras protein signal transduction // inferred from direct assay /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0046677 // response to antibiotic // not recorded 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation /// 0000159 // protein phosphatase type 2A complex // not recorded /// 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000922 // spindle pole // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from sequence or structural similarity 1367828_at NM_022512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022512.1 /DB_XREF=gi:11968089 /GEN=Acads /FEA=FLmRNA /CNT=20 /TID=Rn.1167.1 /TIER=FL+Stack /STK=16 /UG=Rn.1167 /LL=64304 /DEF=Rattus norvegicus short chain acyl-coenzyme A dehydrogenase (Acads), mRNA. /PROD=short chain acyl-coenzyme A dehydrogenase /FL=gb:J05030.1 gb:NM_022512.1 NM_022512 acyl-Coenzyme A dehydrogenase, C-2 to C-3 short chain Acads 64304 NM_022512 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0033539 // fatty acid beta-oxidation using acyl-CoA dehydrogenase // inferred from direct assay /// 0042594 // response to starvation // inferred from expression pattern /// 0046359 // butyrate catabolic process // inferred from direct assay /// 0051289 // protein homotetramerization // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // traceable author statement /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from direct assay 0000062 // acyl-CoA binding // inferred from direct assay /// 0003995 // acyl-CoA dehydrogenase activity // inferred from direct assay /// 0003995 // acyl-CoA dehydrogenase activity // non-traceable author statement /// 0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0004085 // butyryl-CoA dehydrogenase activity // inferred from direct assay /// 0004085 // butyryl-CoA dehydrogenase activity // traceable author statement /// 0004085 // butyryl-CoA dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from direct assay /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1367829_at NM_078623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_078623.1 /DB_XREF=gi:17530976 /GEN=Echs1 /FEA=FLmRNA /CNT=20 /TID=Rn.6847.1 /TIER=FL+Stack /STK=16 /UG=Rn.6847 /LL=140547 /DEF=Rattus norvegicus Enoyl-CoA hydratase, short chain 1, mitochondrial (Echs1), mRNA. /PROD=Enoyl-CoA hydratase, short chain 1,mitochondrial /FL=gb:NM_078623.1 NM_078623 enoyl Coenzyme A hydratase, short chain, 1, mitochondrial Echs1 140547 NM_078623 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from mutant phenotype /// 0006635 // fatty acid beta-oxidation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004300 // enoyl-CoA hydratase activity // inferred from direct assay /// 0004300 // enoyl-CoA hydratase activity // inferred from mutant phenotype /// 0004300 // enoyl-CoA hydratase activity // not recorded /// 0004300 // enoyl-CoA hydratase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016829 // lyase activity // inferred from electronic annotation 1367830_a_at NM_030989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030989.1 /DB_XREF=gi:13591877 /GEN=Tp53 /FEA=FLmRNA /CNT=28 /TID=Rn.54443.1 /TIER=FL+Stack /STK=16 /UG=Rn.54443 /LL=24842 /DEF=Rattus norvegicus Tumor protein p53 (Li-Fraumeni syndrome) (Tp53), mRNA. /PROD=tumor protein p53 (Li-Fraumeni syndrome) /FL=gb:NM_030989.1 gb:U90328.1 NM_030989 tumor protein p53 Tp53 24842 NM_030989 0000060 // protein import into nucleus, translocation // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0001756 // somitogenesis // not recorded /// 0001836 // release of cytochrome c from mitochondria // not recorded /// 0002309 // T cell proliferation involved in immune response // not recorded /// 0002326 // B cell lineage commitment // not recorded /// 0002347 // response to tumor cell // inferred from electronic annotation /// 0002360 // T cell lineage commitment // not recorded /// 0002687 // positive regulation of leukocyte migration // inferred from mutant phenotype /// 0006289 // nucleotide-excision repair // not recorded /// 0006289 // nucleotide-excision repair // inferred from sequence or structural similarity /// 0006302 // double-strand break repair // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006461 // protein complex assembly // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from sequence or structural similarity /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // not recorded /// 0006978 // DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator // not recorded /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0006983 // ER overload response // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0007275 // multicellular organismal development // not recorded /// 0007275 // multicellular organismal development // inferred from sequence or structural similarity /// 0007369 // gastrulation // not recorded /// 0007406 // negative regulation of neuroblast proliferation // not recorded /// 0007417 // central nervous system development // not recorded /// 0007568 // aging // inferred from expression pattern /// 0007569 // cell aging // not recorded /// 0007569 // cell aging // inferred from sequence or structural similarity /// 0008104 // protein localization // not recorded /// 0008156 // negative regulation of DNA replication // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008635 // activation of caspase activity by cytochrome c // not recorded /// 0008635 // activation of caspase activity by cytochrome c // inferred from sequence or structural similarity /// 0009303 // rRNA transcription // not recorded /// 0009411 // response to UV // inferred from expression pattern /// 0009411 // response to UV // not recorded /// 0009651 // response to salt stress // not recorded /// 0009792 // embryo development ending in birth or egg hatching // not recorded /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010038 // response to metal ion // inferred from expression pattern /// 0010165 // response to X-ray // inferred from expression pattern /// 0010165 // response to X-ray // not recorded /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010332 // response to gamma radiation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from direct assay /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0030308 // negative regulation of cell growth // inferred from sequence or structural similarity /// 0030308 // negative regulation of cell growth // traceable author statement /// 0030330 // DNA damage response, signal transduction by p53 class mediator // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0031000 // response to caffeine // inferred from expression pattern /// 0031065 // positive regulation of histone deacetylation // not recorded /// 0031571 // mitotic cell cycle G1/S DNA damage checkpoint // not recorded /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0033077 // T cell differentiation in thymus // not recorded /// 0033552 // response to vitamin B3 // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0034644 // cellular response to UV // not recorded /// 0035264 // multicellular organism growth // not recorded /// 0042060 // wound healing // inferred from expression pattern /// 0042127 // regulation of cell proliferation // not recorded /// 0042149 // cellular response to glucose starvation // not recorded /// 0042221 // response to chemical stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // not recorded /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043523 // regulation of neuron apoptosis // not recorded /// 0043525 // positive regulation of neuron apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045787 // positive regulation of cell cycle // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046902 // regulation of mitochondrial membrane permeability // not recorded /// 0048147 // negative regulation of fibroblast proliferation // not recorded /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0050790 // regulation of catalytic activity // not recorded /// 0051276 // chromosome organization // not recorded /// 0051453 // regulation of intracellular pH // inferred from mutant phenotype /// 0051726 // regulation of cell cycle // not recorded /// 0055093 // response to hyperoxia // inferred from expression pattern 0000785 // chromatin // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // not recorded /// 0005657 // replication fork // not recorded /// 0005667 // transcription factor complex // inferred from direct assay /// 0005669 // transcription factor TFIID complex // not recorded /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from mutant phenotype /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0016363 // nuclear matrix // not recorded /// 0016604 // nuclear body // not recorded /// 0016605 // PML body // not recorded /// 0043234 // protein complex // not recorded 0000739 // DNA strand annealing activity // not recorded /// 0000739 // DNA strand annealing activity // inferred from sequence or structural similarity /// 0002020 // protease binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003702 // RNA polymerase II transcription factor activity // traceable author statement /// 0005507 // copper ion binding // not recorded /// 0005507 // copper ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // inferred from direct assay /// 0019899 // enzyme binding // not recorded /// 0019901 // protein kinase binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0035033 // histone deacetylase regulator activity // not recorded /// 0035035 // histone acetyltransferase binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0047485 // protein N-terminus binding // not recorded /// 0051087 // chaperone binding // not recorded /// 0051721 // protein phosphatase 2A binding // not recorded 1367831_at NM_030989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030989.1 /DB_XREF=gi:13591877 /GEN=Tp53 /FEA=FLmRNA /CNT=28 /TID=Rn.54443.1 /TIER=FL+Stack /STK=16 /UG=Rn.54443 /LL=24842 /DEF=Rattus norvegicus Tumor protein p53 (Li-Fraumeni syndrome) (Tp53), mRNA. /PROD=tumor protein p53 (Li-Fraumeni syndrome) /FL=gb:NM_030989.1 gb:U90328.1 NM_030989 tumor protein p53 Tp53 24842 NM_030989 0000060 // protein import into nucleus, translocation // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0001756 // somitogenesis // not recorded /// 0001836 // release of cytochrome c from mitochondria // not recorded /// 0002309 // T cell proliferation involved in immune response // not recorded /// 0002326 // B cell lineage commitment // not recorded /// 0002347 // response to tumor cell // inferred from electronic annotation /// 0002360 // T cell lineage commitment // not recorded /// 0002687 // positive regulation of leukocyte migration // inferred from mutant phenotype /// 0006289 // nucleotide-excision repair // not recorded /// 0006289 // nucleotide-excision repair // inferred from sequence or structural similarity /// 0006302 // double-strand break repair // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006461 // protein complex assembly // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from sequence or structural similarity /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // not recorded /// 0006978 // DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator // not recorded /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0006983 // ER overload response // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0007275 // multicellular organismal development // not recorded /// 0007275 // multicellular organismal development // inferred from sequence or structural similarity /// 0007369 // gastrulation // not recorded /// 0007406 // negative regulation of neuroblast proliferation // not recorded /// 0007417 // central nervous system development // not recorded /// 0007568 // aging // inferred from expression pattern /// 0007569 // cell aging // not recorded /// 0007569 // cell aging // inferred from sequence or structural similarity /// 0008104 // protein localization // not recorded /// 0008156 // negative regulation of DNA replication // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008635 // activation of caspase activity by cytochrome c // not recorded /// 0008635 // activation of caspase activity by cytochrome c // inferred from sequence or structural similarity /// 0009303 // rRNA transcription // not recorded /// 0009411 // response to UV // inferred from expression pattern /// 0009411 // response to UV // not recorded /// 0009651 // response to salt stress // not recorded /// 0009792 // embryo development ending in birth or egg hatching // not recorded /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010038 // response to metal ion // inferred from expression pattern /// 0010165 // response to X-ray // inferred from expression pattern /// 0010165 // response to X-ray // not recorded /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010332 // response to gamma radiation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from direct assay /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0030308 // negative regulation of cell growth // inferred from sequence or structural similarity /// 0030308 // negative regulation of cell growth // traceable author statement /// 0030330 // DNA damage response, signal transduction by p53 class mediator // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0031000 // response to caffeine // inferred from expression pattern /// 0031065 // positive regulation of histone deacetylation // not recorded /// 0031571 // mitotic cell cycle G1/S DNA damage checkpoint // not recorded /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0033077 // T cell differentiation in thymus // not recorded /// 0033552 // response to vitamin B3 // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0034644 // cellular response to UV // not recorded /// 0035264 // multicellular organism growth // not recorded /// 0042060 // wound healing // inferred from expression pattern /// 0042127 // regulation of cell proliferation // not recorded /// 0042149 // cellular response to glucose starvation // not recorded /// 0042221 // response to chemical stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // not recorded /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043523 // regulation of neuron apoptosis // not recorded /// 0043525 // positive regulation of neuron apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045787 // positive regulation of cell cycle // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046902 // regulation of mitochondrial membrane permeability // not recorded /// 0048147 // negative regulation of fibroblast proliferation // not recorded /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0050790 // regulation of catalytic activity // not recorded /// 0051276 // chromosome organization // not recorded /// 0051453 // regulation of intracellular pH // inferred from mutant phenotype /// 0051726 // regulation of cell cycle // not recorded /// 0055093 // response to hyperoxia // inferred from expression pattern 0000785 // chromatin // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // not recorded /// 0005657 // replication fork // not recorded /// 0005667 // transcription factor complex // inferred from direct assay /// 0005669 // transcription factor TFIID complex // not recorded /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from mutant phenotype /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0016363 // nuclear matrix // not recorded /// 0016604 // nuclear body // not recorded /// 0016605 // PML body // not recorded /// 0043234 // protein complex // not recorded 0000739 // DNA strand annealing activity // not recorded /// 0000739 // DNA strand annealing activity // inferred from sequence or structural similarity /// 0002020 // protease binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003702 // RNA polymerase II transcription factor activity // traceable author statement /// 0005507 // copper ion binding // not recorded /// 0005507 // copper ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // inferred from direct assay /// 0019899 // enzyme binding // not recorded /// 0019901 // protein kinase binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0035033 // histone deacetylase regulator activity // not recorded /// 0035035 // histone acetyltransferase binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0047485 // protein N-terminus binding // not recorded /// 0051087 // chaperone binding // not recorded /// 0051721 // protein phosphatase 2A binding // not recorded 1367832_at NM_013006 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013006.1 /DB_XREF=gi:6981361 /GEN=Lypla1 /FEA=FLmRNA /CNT=21 /TID=Rn.3594.1 /TIER=FL+Stack /STK=16 /UG=Rn.3594 /LL=25514 /DEF=Rattus norvegicus Lysophospholipase (Lypla1), mRNA. /PROD=lysophospholipase /FL=gb:D63885.1 gb:NM_013006.1 gb:U97146.1 NM_013006 lysophospholipase 1 Lypla1 25514 NM_013006 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0004622 // lysophospholipase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation 1367833_at NM_031149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031149.1 /DB_XREF=gi:13592140 /GEN=LOC81827 /FEA=FLmRNA /CNT=21 /TID=Rn.10972.1 /TIER=FL+Stack /STK=16 /UG=Rn.10972 /LL=81827 /DEF=Rattus norvegicus for proteasomal ATPase (SUG1) (LOC81827), mRNA. /PROD=for proteasomal ATPase (SUG1) /FL=gb:AB000491.1 gb:D83521.1 gb:NM_031149.1 NM_031149 proteasome (prosome, macropain) 26S subunit, ATPase, 5 Psmc5 81827 NM_031149 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // not recorded /// 0000502 // proteasome complex // inferred from sequence or structural similarity /// 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from sequence or structural similarity /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0031531 // thyrotropin-releasing hormone receptor binding // not recorded /// 0031531 // thyrotropin-releasing hormone receptor binding // inferred from sequence or structural similarity /// 0031531 // thyrotropin-releasing hormone receptor binding // inferred from electronic annotation 1367834_at NM_053464 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053464.1 /DB_XREF=gi:16758207 /GEN=Srm /FEA=FLmRNA /CNT=18 /TID=Rn.22258.1 /TIER=FL+Stack /STK=16 /UG=Rn.22258 /LL=84596 /DEF=Rattus norvegicus spermidine synthase (Srm), mRNA. /PROD=spermidine synthase /FL=gb:NM_053464.1 gb:AF337636.1 NM_053464 spermidine synthase Srm 84596 NM_053464 0008295 // spermidine biosynthetic process // inferred from direct assay /// 0008295 // spermidine biosynthetic process // inferred from electronic annotation 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004766 // spermidine synthase activity // inferred from direct assay /// 0004766 // spermidine synthase activity // not recorded /// 0004766 // spermidine synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1367835_at NM_019279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019279.1 /DB_XREF=gi:9507060 /GEN=Saas /FEA=FLmRNA /CNT=18 /TID=Rn.25745.1 /TIER=FL+Stack /STK=16 /UG=Rn.25745 /LL=50562 /DEF=Rattus norvegicus granin-like neuroendocrine peptide precursor (Saas), mRNA. /PROD=granin-like neuroendocrine peptide precursor /FL=gb:AF181561.1 gb:NM_019279.1 NM_019279 proprotein convertase subtilisin/kexin type 1 inhibitor Pcsk1n 246333 NM_019279 0002021 // response to dietary excess // inferred from electronic annotation /// 0002021 // response to dietary excess // not recorded /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0009409 // response to cold // inferred from electronic annotation /// 0009409 // response to cold // not recorded /// 0010951 // negative regulation of endopeptidase activity // not recorded /// 0016486 // peptide hormone processing // inferred from electronic annotation /// 0016486 // peptide hormone processing // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0030141 // stored secretory granule // inferred from electronic annotation /// 0030141 // stored secretory granule // not recorded 0004866 // endopeptidase inhibitor activity // inferred from direct assay /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // not recorded 1367836_at U88294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U88294.1 /DB_XREF=gi:1850589 /GEN=CPTI /FEA=FLmRNA /CNT=26 /TID=Rn.2856.1 /TIER=FL /STK=1 /UG=Rn.2856 /LL=25757 /DEF=Rattus norvegicus carnitine palmitoyltransferase I (CPTI) mRNA, nuclear gene encoding mitochondrial protein, complete cds. /PROD=carnitine palmitoyltransferase I /FL=gb:U88294.1 gb:L07736.1 gb:NM_031559.1 U88294 carnitine palmitoyltransferase 1a, liver Cpt1a 25757 NM_031559 0001676 // long-chain fatty acid metabolic process // inferred from mutant phenotype /// 0001676 // long-chain fatty acid metabolic process // traceable author statement /// 0006006 // glucose metabolic process // inferred from mutant phenotype /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0009437 // carnitine metabolic process // traceable author statement /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0031998 // regulation of fatty acid beta-oxidation // traceable author statement /// 0032000 // positive regulation of fatty acid beta-oxidation // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0042755 // eating behavior // inferred from mutant phenotype /// 0046320 // regulation of fatty acid oxidation // inferred from mutant phenotype /// 0050796 // regulation of insulin secretion // inferred from mutant phenotype /// 0051260 // protein homooligomerization // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0004095 // carnitine O-palmitoyltransferase activity // inferred from direct assay /// 0004095 // carnitine O-palmitoyltransferase activity // inferred from mutant phenotype /// 0004095 // carnitine O-palmitoyltransferase activity // traceable author statement /// 0004095 // carnitine O-palmitoyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay 1367837_at NM_017281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017281.1 /DB_XREF=gi:8394068 /GEN=Psma4 /FEA=FLmRNA /CNT=24 /TID=Rn.11076.1 /TIER=FL+Stack /STK=16 /UG=Rn.11076 /LL=29671 /DEF=Rattus norvegicus proteasome (prosome, macropain) subunit, alpha type 4 (Psma4), mRNA. /PROD=proteasome (prosome, macropain) subunit, alphatype 4 /FL=gb:NM_017281.1 NM_017281 proteasome (prosome, macropain) subunit, alpha type 4 Psma4 29671 NM_017281 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005839 // proteasome core complex // inferred from electronic annotation /// 0019773 // proteasome core complex, alpha-subunit complex // inferred from electronic annotation 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1367838_at NM_017074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017074.1 /DB_XREF=gi:8393214 /GEN=Cth /FEA=FLmRNA /CNT=22 /TID=Rn.3881.1 /TIER=FL+Stack /STK=16 /UG=Rn.3881 /LL=24962 /DEF=Rattus norvegicus CTL target antigen (Cth), mRNA. /PROD=CTL target antigen /FL=gb:AB052882.2 gb:AY032875.1 gb:D17370.1 gb:NM_017074.1 NM_017074 cystathionase (cystathionine gamma-lyase) Cth 24962 NM_017074 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006749 // glutathione metabolic process // inferred from mutant phenotype /// 0008152 // metabolic process // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0018272 // protein-pyridoxal-5-phosphate linkage via peptidyl-N6-pyridoxal phosphate-L-lysine // not recorded /// 0018272 // protein-pyridoxal-5-phosphate linkage via peptidyl-N6-pyridoxal phosphate-L-lysine // inferred from sequence or structural similarity /// 0018272 // protein-pyridoxal-5-phosphate linkage via peptidyl-N6-pyridoxal phosphate-L-lysine // inferred from electronic annotation /// 0019344 // cysteine biosynthetic process // inferred from direct assay /// 0019344 // cysteine biosynthetic process // not recorded /// 0019344 // cysteine biosynthetic process // inferred from sequence or structural similarity /// 0019344 // cysteine biosynthetic process // inferred from electronic annotation /// 0019346 // transsulfuration // traceable author statement /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0050667 // homocysteine metabolic process // inferred from direct assay /// 0051289 // protein homotetramerization // inferred from electronic annotation /// 0051289 // protein homotetramerization // not recorded /// 0070814 // hydrogen sulfide biosynthetic process // not recorded /// 0070814 // hydrogen sulfide biosynthetic process // inferred from sequence or structural similarity /// 0070814 // hydrogen sulfide biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004121 // cystathionine beta-lyase activity // inferred from direct assay /// 0004123 // cystathionine gamma-lyase activity // not recorded /// 0004123 // cystathionine gamma-lyase activity // inferred from sequence or structural similarity /// 0004123 // cystathionine gamma-lyase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // not recorded /// 0030170 // pyridoxal phosphate binding // inferred from sequence or structural similarity /// 0030170 // pyridoxal phosphate binding // traceable author statement /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1367839_at NM_019238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019238.1 /DB_XREF=gi:9506590 /GEN=Fdft1 /FEA=FLmRNA /CNT=21 /TID=Rn.3252.1 /TIER=FL+Stack /STK=16 /UG=Rn.3252 /LL=29580 /DEF=Rattus norvegicus farnesyl diphosphate farnesyl transferase 1 (Fdft1), mRNA. /PROD=farnesyl diphosphate farnesyl transferase 1 /FL=gb:NM_019238.1 gb:M95591.1 NM_019238 farnesyl diphosphate farnesyl transferase 1 Fdft1 29580 NM_019238 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from mutant phenotype /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0045338 // farnesyl diphosphate metabolic process // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004310 // farnesyl-diphosphate farnesyltransferase activity // inferred from direct assay /// 0004310 // farnesyl-diphosphate farnesyltransferase activity // inferred from mutant phenotype /// 0004310 // farnesyl-diphosphate farnesyltransferase activity // not recorded /// 0004310 // farnesyl-diphosphate farnesyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1367840_at U87863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U87863.1 /DB_XREF=gi:1885384 /FEA=FLmRNA /CNT=20 /TID=Rn.21.1 /TIER=FL+Stack /STK=16 /UG=Rn.21 /LL=56084 /UG_GENE=Hgs /DEF=Rattus norvegicus SNAP-25 interacting protein hrs-2 mRNA, complete cds. /PROD=SNAP-25 interacting protein hrs-2 /FL=gb:U87863.1 gb:AF036344.1 gb:NM_019387.1 U87863 hepatocyte growth factor-regulated tyrosine kinase substrate Hgs 56084 NM_019387 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0046426 // negative regulation of JAK-STAT cascade // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005769 // early endosome // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0032585 // multivesicular body membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0019904 // protein domain specific binding // non-traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 1367841_a_at NM_134385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134385.1 /DB_XREF=gi:19705496 /GEN=Plpcbeta /FEA=FLmRNA /CNT=20 /TID=Rn.56124.1 /TIER=FL+Stack /STK=16 /UG=Rn.56124 /DEF=Rattus norvegicus prolactin-like protein C beta (Plpcbeta), mRNA. /PROD=prolactin-like protein C beta /FL=gb:AF239745.1 gb:NM_134385.1 NM_134385 prolactin family 8, subfamily a, member 9 Prl8a9 171406 NM_134385 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation 1367842_at NM_080478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080478.1 /DB_XREF=gi:17978452 /GEN=Apbb1 /FEA=FLmRNA /CNT=19 /TID=Rn.19953.1 /TIER=FL+Stack /STK=16 /UG=Rn.19953 /LL=29722 /DEF=Rattus norvegicus amyloid beta (A4) precursor protein-binding, family B, member 1 (Apbb1), mRNA. /PROD=amyloid beta (A4) precursor protein-binding,family B, member 1 /FL=gb:NM_080478.1 gb:AF333983.1 NM_080478 amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) Apbb1 29722 NM_080478 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0006302 // double-strand break repair // inferred from mutant phenotype /// 0006302 // double-strand break repair // not recorded /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0007050 // cell cycle arrest // inferred from sequence or structural similarity /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0008542 // visual learning // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0010039 // response to iron ion // inferred from expression pattern /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030308 // negative regulation of cell growth // not recorded /// 0030308 // negative regulation of cell growth // inferred from sequence or structural similarity /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from sequence or structural similarity /// 0043967 // histone H4 acetylation // inferred from mutant phenotype /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045739 // positive regulation of DNA repair // inferred from mutant phenotype /// 0045739 // positive regulation of DNA repair // not recorded /// 0045739 // positive regulation of DNA repair // inferred from electronic annotation /// 0045749 // negative regulation of S phase of mitotic cell cycle // not recorded /// 0045749 // negative regulation of S phase of mitotic cell cycle // inferred from sequence or structural similarity /// 0045749 // negative regulation of S phase of mitotic cell cycle // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0050714 // positive regulation of protein secretion // inferred from mutant phenotype /// 0050760 // negative regulation of thymidylate synthase biosynthetic process // not recorded /// 0050760 // negative regulation of thymidylate synthase biosynthetic process // inferred from sequence or structural similarity /// 0050760 // negative regulation of thymidylate synthase biosynthetic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0030426 // growth cone // inferred from direct assay /// 0030426 // growth cone // not recorded /// 0030426 // growth cone // inferred from sequence or structural similarity /// 0030426 // growth cone // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0045202 // synapse // not recorded /// 0045202 // synapse // inferred from sequence or structural similarity /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0001540 // beta-amyloid binding // not recorded /// 0001540 // beta-amyloid binding // inferred from sequence or structural similarity /// 0001540 // beta-amyloid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from sequence or structural similarity /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0042393 // histone binding // not recorded /// 0070064 // proline-rich region binding // not recorded 1367843_at NM_134407 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134407.1 /DB_XREF=gi:19705536 /GEN=Akr7a2 /FEA=FLmRNA /CNT=19 /TID=Rn.8548.1 /TIER=FL+Stack /STK=16 /UG=Rn.8548 /LL=171445 /DEF=Rattus norvegicus aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase) (Akr7a2), mRNA. /PROD=aldo-keto reductase family 7, member A2(aflatoxin aldehyde reductase) /FL=gb:NM_134407.1 gb:AB037424.1 NM_134407 aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase) Akr7a2 171445 NM_134407 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // inferred from electronic annotation 0004032 // aldehyde reductase activity // inferred from direct assay /// 0004033 // aldo-keto reductase activity // non-traceable author statement /// 0004033 // aldo-keto reductase activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation 1367844_at M12672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M12672.1 /DB_XREF=gi:204439 /FEA=FLmRNA /CNT=83 /TID=Rn.3036.1 /TIER=FL+Stack /STK=15 /UG=Rn.3036 /LL=81664 /UG_GENE=Gnai2 /UG_TITLE=GTP-binding protein (G-alpha-i2) /DEF=Rat guanine nucleotide-binding protein G-i, alpha subunit mRNA, complete cds. /FL=gb:M12672.1 gb:M17528.1 gb:NM_031035.1 M12672 guanine nucleotide binding protein (G protein), alpha inhibiting 2 Gnai2 81664 NM_031035 0000186 // activation of MAPKK activity // inferred from mutant phenotype /// 0001973 // adenosine receptor signaling pathway // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007213 // muscarinic acetylcholine receptor signaling pathway // not recorded /// 0007213 // muscarinic acetylcholine receptor signaling pathway // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from direct assay /// 0007216 // metabotropic glutamate receptor signaling pathway // inferred from direct assay /// 0007243 // intracellular protein kinase cascade // inferred from mutant phenotype /// 0008016 // regulation of heart contraction // not recorded /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0050805 // negative regulation of synaptic transmission // inferred from direct assay /// 0051927 // negative regulation of calcium ion transport via voltage-gated calcium channel activity // inferred from direct assay 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0045121 // membrane raft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation 1367845_at NM_017029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017029.1 /DB_XREF=gi:8393822 /GEN=Nefm /FEA=FLmRNA /CNT=56 /TID=Rn.10971.1 /TIER=FL+Stack /STK=15 /UG=Rn.10971 /LL=24588 /DEF=Rattus norvegicus Neurofilament protein, middle polypeptide (Nefm), mRNA. /PROD=neurofilament protein, middle polypeptide /FL=gb:NM_017029.1 gb:M18628.1 NM_017029 neurofilament, medium polypeptide Nefm 24588 NM_017029 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0000226 // microtubule cytoskeleton organization // not recorded /// 0008088 // axon cargo transport // inferred from electronic annotation /// 0008088 // axon cargo transport // not recorded /// 0031133 // regulation of axon diameter // inferred from electronic annotation /// 0031133 // regulation of axon diameter // not recorded /// 0045104 // intermediate filament cytoskeleton organization // not recorded /// 0045104 // intermediate filament cytoskeleton organization // inferred from electronic annotation /// 0045110 // intermediate filament bundle assembly // inferred from electronic annotation /// 0045110 // intermediate filament bundle assembly // not recorded /// 0060052 // neurofilament cytoskeleton organization // inferred from electronic annotation /// 0060052 // neurofilament cytoskeleton organization // not recorded 0005856 // cytoskeleton // inferred from direct assay /// 0005882 // intermediate filament // inferred from electronic annotation /// 0005883 // neurofilament // inferred from electronic annotation /// 0005883 // neurofilament // not recorded /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0031594 // neuromuscular junction // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367846_at NM_012618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012618.1 /DB_XREF=gi:6981325 /GEN=S100a4 /FEA=FLmRNA /CNT=27 /TID=Rn.504.1 /TIER=FL+Stack /STK=15 /UG=Rn.504 /LL=24615 /DEF=Rattus norvegicus S100 calcium-binding protein A4 (S100a4), mRNA. /PROD=protein 9 Ka homologous to calcium-bindingprotein /FL=gb:NM_012618.1 gb:J03628.1 NM_012618 S100 calcium-binding protein A4 S100a4 24615 NM_012618 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0043005 // neuron projection // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // traceable author statement /// 0046982 // protein heterodimerization activity // traceable author statement /// 0048306 // calcium-dependent protein binding // inferred from mutant phenotype /// 0050786 // RAGE receptor binding // inferred from electronic annotation /// 0050786 // RAGE receptor binding // not recorded 1367847_at NM_053611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053611.1 /DB_XREF=gi:16758405 /GEN=Nupr1 /FEA=FLmRNA /CNT=23 /TID=Rn.11182.1 /TIER=FL+Stack /STK=15 /UG=Rn.11182 /LL=113900 /DEF=Rattus norvegicus nuclear proten 1 (Nupr1), mRNA. /PROD=nuclear proten 1 /FL=gb:NM_053611.1 gb:AF014503.1 NM_053611 nuclear protein, transcriptional regulator, 1 Nupr1 113900 NM_053611 0002526 // acute inflammatory response // inferred from electronic annotation /// 0002526 // acute inflammatory response // not recorded /// 0009636 // response to toxin // inferred from electronic annotation /// 0009636 // response to toxin // not recorded /// 0016049 // cell growth // not recorded /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // inferred from electronic annotation /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0048147 // negative regulation of fibroblast proliferation // inferred from electronic annotation /// 0048147 // negative regulation of fibroblast proliferation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 1367848_at NM_024130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024130.1 /DB_XREF=gi:13162301 /GEN=Dctn1 /FEA=FLmRNA /CNT=23 /TID=Rn.11284.1 /TIER=FL+Stack /STK=15 /UG=Rn.11284 /LL=29167 /DEF=Rattus norvegicus dynactin 1 (Dctn1), mRNA. /PROD=dynactin 1 /FL=gb:NM_024130.1 NM_024130 dynactin 1 Dctn1 29167 NM_024130 0007017 // microtubule-based process // traceable author statement 0000776 // kinetochore // not recorded /// 0000922 // spindle pole // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005868 // cytoplasmic dynein complex // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotation /// 0030286 // dynein complex // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from electronic annotation /// 0031252 // cell leading edge // not recorded 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // non-traceable author statement 1367849_at NM_013026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013026.1 /DB_XREF=gi:6981517 /GEN=Sdc1 /FEA=FLmRNA /CNT=24 /TID=Rn.11176.1 /TIER=FL+Stack /STK=15 /UG=Rn.11176 /LL=25216 /DEF=Rattus norvegicus Syndecan 1 (Sdc1), mRNA. /PROD=syndecan 1 /FL=gb:M81785.1 gb:NM_013026.1 NM_013026 syndecan 1 Sdc1 25216 NM_013026 0001657 // ureteric bud development // inferred from expression pattern /// 0006954 // inflammatory response // inferred from direct assay /// 0007155 // cell adhesion // non-traceable author statement /// 0007267 // cell-cell signaling // non-traceable author statement /// 0009636 // response to toxin // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0042060 // wound healing // inferred from expression pattern /// 0042476 // odontogenesis // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0048627 // myoblast development // inferred from electronic annotation /// 0048627 // myoblast development // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from expression pattern /// 0055002 // striated muscle cell development // inferred from electronic annotation /// 0055002 // striated muscle cell development // not recorded /// 0060009 // Sertoli cell development // inferred from expression pattern /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0001931 // uropod // inferred from mutant phenotype /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0001948 // glycoprotein binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0050840 // extracellular matrix binding // traceable author statement 1367850_at NM_053843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053843.1 /DB_XREF=gi:16758699 /GEN=Fcgr3 /FEA=FLmRNA /CNT=21 /TID=Rn.6050.1 /TIER=FL+Stack /STK=15 /UG=Rn.6050 /LL=116591 /DEF=Rattus norvegicus Fc receptor, IgG, low affinity III (Fcgr3), mRNA. /PROD=Fc receptor, IgG, low affinity III /FL=gb:NM_053843.1 gb:M64370.1 gb:M64368.1 gb:M64369.1 gb:M32062.1 NM_053843 Fc fragment of IgG, low affinity IIa, receptor (CD32) /// Low affinity immunoglobulin gamma Fc region receptor III-like /// Fc gamma receptor II beta Fcgr2a /// LOC100362543 /// LOC498276 100362543 /// 116591 /// 498276 NM_001135992 /// NM_053843 /// XR_086007 0001788 // antibody-dependent cellular cytotoxicity // not recorded /// 0001798 // positive regulation of type IIa hypersensitivity // not recorded /// 0001805 // positive regulation of type III hypersensitivity // not recorded /// 0001812 // positive regulation of type I hypersensitivity // not recorded /// 0001820 // serotonin secretion // not recorded /// 0006910 // phagocytosis, recognition // not recorded /// 0006911 // phagocytosis, engulfment // not recorded /// 0007165 // signal transduction // not recorded /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0021675 // nerve development // inferred from expression pattern /// 0030593 // neutrophil chemotaxis // not recorded /// 0042535 // positive regulation of tumor necrosis factor biosynthetic process // not recorded /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // not recorded /// 0045576 // mast cell activation // not recorded /// 0050766 // positive regulation of phagocytosis // not recorded /// 0050776 // regulation of immune response // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019770 // IgG receptor activity // inferred from direct assay /// 0019770 // IgG receptor activity // not recorded /// 0019864 // IgG binding // not recorded /// 0019864 // IgG binding // inferred from electronic annotation 1367851_at J04488 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J04488.1 /DB_XREF=gi:206114 /FEA=FLmRNA /CNT=21 /TID=Rn.11400.1 /TIER=FL+Stack /STK=15 /UG=Rn.11400 /LL=25526 /UG_GENE=Ptgds /UG_TITLE=Prostaglandin D synthase /DEF=Rat prostaglandin D synthetase mRNA, complete cds. /FL=gb:NM_013015.1 gb:J04488.1 J04488 prostaglandin D2 synthase (brain) Ptgds 25526 NM_013015 0001516 // prostaglandin biosynthetic process // inferred from direct assay /// 0001516 // prostaglandin biosynthetic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0045187 // regulation of circadian sleep/wake cycle, sleep // not recorded /// 0045187 // regulation of circadian sleep/wake cycle, sleep // inferred from sequence or structural similarity /// 0045187 // regulation of circadian sleep/wake cycle, sleep // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // not recorded /// 0005791 // rough endoplasmic reticulum // inferred from sequence or structural similarity /// 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004667 // prostaglandin-D synthase activity // inferred from direct assay /// 0004667 // prostaglandin-D synthase activity // inferred from electronic annotation /// 0005215 // transporter activity // inferred from direct assay /// 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005501 // retinoid binding // inferred from direct assay /// 0016853 // isomerase activity // inferred from electronic annotation 1367852_s_at NM_053931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053931.1 /DB_XREF=gi:16758813 /GEN=Pnutl1 /FEA=FLmRNA /CNT=41 /TID=Rn.48837.1 /TIER=FL+Stack /STK=15 /UG=Rn.48837 /LL=116728 /DEF=Rattus norvegicus peanut (Drosophila)-like 1 (Pnutl1), mRNA. /PROD=peanut (Drosophila)-like 1 /FL=gb:AB027146.1 gb:NM_053931.1 gb:AB027143.1 NM_053931 glycoprotein Ib (platelet), beta polypeptide /// septin 5 Gp1bb /// Sept5 116727 /// 116728 NM_053930 /// NM_053931 0007049 // cell cycle // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation /// 0007599 // hemostasis // inferred from electronic annotation /// 0017157 // regulation of exocytosis // not recorded /// 0017157 // regulation of exocytosis // inferred from sequence or structural similarity /// 0045921 // positive regulation of exocytosis // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0001725 // stress fiber // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0008021 // synaptic vesicle // inferred from direct assay /// 0008021 // synaptic vesicle // not recorded /// 0008021 // synaptic vesicle // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0031092 // platelet alpha granule membrane // not recorded /// 0031105 // septin complex // inferred from electronic annotation /// 0031105 // septin complex // inferred from direct assay /// 0032154 // cleavage furrow // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0019003 // GDP binding // inferred from direct assay /// 0019905 // syntaxin binding // inferred from mutant phenotype /// 0035091 // phosphoinositide binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from physical interaction 1367853_at NM_031798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031798.1 /DB_XREF=gi:13929129 /GEN=Slc12a2 /FEA=FLmRNA /CNT=40 /TID=Rn.11523.1 /TIER=FL+Stack /STK=15 /UG=Rn.11523 /LL=83629 /DEF=Rattus norvegicus solute carrier family 12, member 2 (Slc12a2), mRNA. /PROD=solute carrier family 12, member 2 /FL=gb:AF051561.1 gb:NM_031798.1 NM_031798 solute carrier family 12 (sodium/potassium/chloride transporters), member 2 Slc12a2 83629 NM_031798 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from mutant phenotype /// 0006814 // sodium ion transport // inferred from mutant phenotype /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from mutant phenotype /// 0006821 // chloride transport // inferred from electronic annotation /// 0006972 // hyperosmotic response // inferred from mutant phenotype /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from expression pattern /// 0015696 // ammonium transport // not recorded /// 0015696 // ammonium transport // inferred from electronic annotation /// 0030321 // transepithelial chloride transport // not recorded /// 0030321 // transepithelial chloride transport // inferred from electronic annotation /// 0045795 // positive regulation of cell volume // inferred from mutant phenotype /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // not recorded /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070634 // transepithelial ammonium transport // not recorded /// 0070634 // transepithelial ammonium transport // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from mutant phenotype /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008511 // sodium:potassium:chloride symporter activity // inferred from mutant phenotype /// 0015377 // cation:chloride symporter activity // traceable author statement /// 0015377 // cation:chloride symporter activity // inferred from electronic annotation /// 0051739 // ammonia transmembrane transporter activity // not recorded /// 0051739 // ammonia transmembrane transporter activity // inferred from electronic annotation 1367854_at NM_016987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_016987.1 /DB_XREF=gi:8392838 /GEN=Acly /FEA=FLmRNA /CNT=32 /TID=Rn.29771.1 /TIER=FL+Stack /STK=15 /UG=Rn.29771 /LL=24159 /DEF=Rattus norvegicus ATP citrate lyase (Acly), mRNA. /PROD=ATP citrate lyase /FL=gb:NM_016987.1 gb:J05210.1 NM_016987 ATP citrate lyase Acly 24159 NM_001111095 /// NM_016987 0006084 // acetyl-CoA metabolic process // inferred from direct assay /// 0006085 // acetyl-CoA biosynthetic process // non-traceable author statement /// 0006101 // citrate metabolic process // inferred from direct assay /// 0006629 // lipid metabolic process // inferred from expression pattern /// 0006633 // fatty acid biosynthetic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0044262 // cellular carbohydrate metabolic process // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003878 // ATP citrate synthase activity // inferred from direct assay /// 0003878 // ATP citrate synthase activity // inferred from electronic annotation /// 0004775 // succinate-CoA ligase (ADP-forming) activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008815 // citrate (pro-3S)-lyase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046912 // transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer // inferred from electronic annotation 1367855_at AF071495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF071495.1 /DB_XREF=gi:3243054 /GEN=SRB1R /FEA=FLmRNA /CNT=27 /TID=Rn.3142.1 /TIER=FL /STK=1 /UG=Rn.3142 /LL=25073 /DEF=Rattus norvegicus type II pneumocyte CD36-related class B scavenger receptor (SRB1R) mRNA, complete cds. /PROD=type II pneumocyte CD36-related class Bscavenger receptor /FL=gb:U76205.1 gb:NM_031541.1 gb:AF071495.1 gb:AB002151.1 gb:D89655.1 AF071495 scavenger receptor class B, member 1 Scarb1 25073 NM_031541 0001935 // endothelial cell proliferation // inferred from electronic annotation /// 0001935 // endothelial cell proliferation // not recorded /// 0006694 // steroid biosynthetic process // traceable author statement /// 0006702 // androgen biosynthetic process // inferred from direct assay /// 0006707 // cholesterol catabolic process // inferred from electronic annotation /// 0006707 // cholesterol catabolic process // not recorded /// 0006869 // lipid transport // inferred from mutant phenotype /// 0006910 // phagocytosis, recognition // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from electronic annotation /// 0010886 // positive regulation of cholesterol storage // not recorded /// 0010886 // positive regulation of cholesterol storage // inferred from sequence or structural similarity /// 0010886 // positive regulation of cholesterol storage // inferred from electronic annotation /// 0015920 // lipopolysaccharide transport // inferred from electronic annotation /// 0015920 // lipopolysaccharide transport // not recorded /// 0030301 // cholesterol transport // not recorded /// 0030301 // cholesterol transport // inferred from electronic annotation /// 0032497 // detection of lipopolysaccharide // inferred from electronic annotation /// 0032497 // detection of lipopolysaccharide // not recorded /// 0034384 // high-density lipoprotein particle clearance // not recorded /// 0034384 // high-density lipoprotein particle clearance // inferred from sequence or structural similarity /// 0034384 // high-density lipoprotein particle clearance // inferred from electronic annotation /// 0043534 // blood vessel endothelial cell migration // inferred from electronic annotation /// 0043534 // blood vessel endothelial cell migration // not recorded /// 0043654 // recognition of apoptotic cell // inferred from direct assay /// 0043654 // recognition of apoptotic cell // not recorded /// 0043654 // recognition of apoptotic cell // inferred from sequence or structural similarity /// 0043654 // recognition of apoptotic cell // inferred from electronic annotation /// 0043691 // reverse cholesterol transport // not recorded /// 0043691 // reverse cholesterol transport // inferred from sequence or structural similarity /// 0043691 // reverse cholesterol transport // inferred from electronic annotation /// 0050764 // regulation of phagocytosis // inferred from direct assay /// 0050764 // regulation of phagocytosis // traceable author statement /// 0051000 // positive regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051000 // positive regulation of nitric-oxide synthase activity // not recorded /// 0051856 // adhesion to symbiont // inferred from electronic annotation /// 0051856 // adhesion to symbiont // not recorded 0000299 // integral to membrane of membrane fraction // inferred from electronic annotation /// 0000299 // integral to membrane of membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005901 // caveola // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031528 // microvillus membrane // inferred from direct assay 0001530 // lipopolysaccharide binding // not recorded /// 0001530 // lipopolysaccharide binding // inferred from electronic annotation /// 0001786 // phosphatidylserine binding // inferred from direct assay /// 0001786 // phosphatidylserine binding // traceable author statement /// 0001875 // lipopolysaccharide receptor activity // inferred from electronic annotation /// 0001875 // lipopolysaccharide receptor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005319 // lipid transporter activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008035 // high-density lipoprotein binding // not recorded /// 0008035 // high-density lipoprotein binding // inferred from electronic annotation /// 0030169 // low-density lipoprotein binding // not recorded /// 0030169 // low-density lipoprotein binding // inferred from sequence or structural similarity /// 0030169 // low-density lipoprotein binding // inferred from electronic annotation /// 0034185 // apolipoprotein binding // not recorded /// 0034185 // apolipoprotein binding // inferred from electronic annotation /// 0034186 // apolipoprotein A-I binding // inferred from electronic annotation /// 0034186 // apolipoprotein A-I binding // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0070506 // high-density lipoprotein receptor activity // not recorded /// 0070506 // high-density lipoprotein receptor activity // inferred from sequence or structural similarity /// 0070506 // high-density lipoprotein receptor activity // inferred from electronic annotation 1367856_at NM_017006 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017006.1 /DB_XREF=gi:8393380 /GEN=G6pd /FEA=FLmRNA /CNT=26 /TID=Rn.11040.1 /TIER=FL+Stack /STK=15 /UG=Rn.11040 /LL=24377 /DEF=Rattus norvegicus Glucose-6-phosphate dehydrogenase (G6pd), mRNA. /PROD=glucose-6-phosphate dehydrogenase /FL=gb:NM_017006.1 NM_017006 glucose-6-phosphate dehydrogenase G6pd 24377 NM_017006 0001816 // cytokine production // not recorded /// 0001998 // angiotensin mediated vasoconstriction involved in regulation of systemic arterial blood pressure // not recorded /// 0002033 // vasodilation by angiotensin involved in regulation of systemic arterial blood pressure // not recorded /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006098 // pentose-phosphate shunt // inferred from direct assay /// 0006098 // pentose-phosphate shunt // not recorded /// 0006695 // cholesterol biosynthetic process // not recorded /// 0006740 // NADPH regeneration // not recorded /// 0006741 // NADP biosynthetic process // not recorded /// 0006749 // glutathione metabolic process // not recorded /// 0006979 // response to oxidative stress // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009051 // pentose-phosphate shunt, oxidative branch // inferred from mutant phenotype /// 0009051 // pentose-phosphate shunt, oxidative branch // not recorded /// 0010734 // negative regulation of protein glutathionylation // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019322 // pentose biosynthetic process // not recorded /// 0032094 // response to food // inferred from expression pattern /// 0032613 // interleukin-10 production // not recorded /// 0032615 // interleukin-12 production // not recorded /// 0034599 // cellular response to oxidative stress // not recorded /// 0040014 // regulation of multicellular organism growth // not recorded /// 0043249 // erythrocyte maturation // not recorded /// 0045471 // response to ethanol // inferred from direct assay /// 0045767 // regulation of anti-apoptosis // inferred from direct assay /// 0046390 // ribose phosphate biosynthetic process // not recorded /// 0048821 // erythrocyte development // not recorded /// 0051156 // glucose 6-phosphate metabolic process // inferred from direct assay /// 0051156 // glucose 6-phosphate metabolic process // inferred from mutant phenotype /// 0051156 // glucose 6-phosphate metabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005813 // centrosome // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0009898 // internal side of plasma membrane // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004345 // glucose-6-phosphate dehydrogenase activity // inferred from direct assay /// 0004345 // glucose-6-phosphate dehydrogenase activity // inferred from mutant phenotype /// 0004345 // glucose-6-phosphate dehydrogenase activity // not recorded /// 0004345 // glucose-6-phosphate dehydrogenase activity // non-traceable author statement /// 0004345 // glucose-6-phosphate dehydrogenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from direct assay /// 0005536 // glucose binding // inferred from direct assay /// 0005536 // glucose binding // inferred from mutant phenotype /// 0005536 // glucose binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0050661 // NADP or NADPH binding // inferred from direct assay /// 0050661 // NADP or NADPH binding // inferred from mutant phenotype /// 0050661 // NADP or NADPH binding // not recorded 1367857_at NM_053445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053445.1 /DB_XREF=gi:16758189 /GEN=Fads1 /FEA=FLmRNA /CNT=21 /TID=Rn.28161.1 /TIER=FL+Stack /STK=15 /UG=Rn.28161 /LL=84575 /DEF=Rattus norvegicus fatty acid desaturase 1 (Fads1), mRNA. /PROD=fatty acid desaturase 1 /FL=gb:NM_053445.1 gb:AB052085.1 gb:AF320509.1 NM_053445 fatty acid desaturase 1 Fads1 84575 NM_053445 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006636 // unsaturated fatty acid biosynthetic process // inferred from direct assay /// 0006636 // unsaturated fatty acid biosynthetic process // not recorded /// 0006636 // unsaturated fatty acid biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006950 // response to stress // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0009267 // cellular response to starvation // inferred from electronic annotation /// 0009267 // cellular response to starvation // not recorded /// 0009744 // response to sucrose stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019369 // arachidonic acid metabolic process // inferred from mutant phenotype /// 0022900 // electron transport chain // inferred from electronic annotation /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0033189 // response to vitamin A // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // not recorded /// 0016717 // oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water // inferred from direct assay /// 0016717 // oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation 1367858_at NM_012980 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012980.1 /DB_XREF=gi:6981211 /GEN=Mmp11 /FEA=FLmRNA /CNT=20 /TID=Rn.11123.1 /TIER=FL+Stack /STK=15 /UG=Rn.11123 /LL=25481 /DEF=Rattus norvegicus Matrix metalloproteinase 11 (stromelysin 3) (Mmp11), mRNA. /PROD=matrix metalloproteinase 11 (stromelysin 3) /FL=gb:NM_012980.1 gb:U46034.1 NM_012980 matrix metallopeptidase 11 Mmp11 25481 NM_012980 0006508 // proteolysis // inferred from electronic annotation /// 0030574 // collagen catabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367859_at NM_013174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013174.1 /DB_XREF=gi:6981649 /GEN=Tgfb3 /FEA=FLmRNA /CNT=18 /TID=Rn.7018.1 /TIER=FL+Stack /STK=15 /UG=Rn.7018 /LL=25717 /DEF=Rattus norvegicus Transforming growth factor, beta 3 (Tgfb3), mRNA. /PROD=transforming growth factor, beta 3 /FL=gb:U03491.1 gb:NM_013174.1 NM_013174 transforming growth factor, beta 3 Tgfb3 25717 NM_013174 0000187 // activation of MAPK activity // inferred from direct assay /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007184 // SMAD protein nuclear translocation // inferred from direct assay /// 0007435 // salivary gland morphogenesis // inferred from electronic annotation /// 0007435 // salivary gland morphogenesis // not recorded /// 0007565 // female pregnancy // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008156 // negative regulation of DNA replication // inferred from electronic annotation /// 0008156 // negative regulation of DNA replication // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from electronic annotation /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0016049 // cell growth // inferred from electronic annotation /// 0022601 // menstrual cycle phase // inferred from electronic annotation /// 0022601 // menstrual cycle phase // not recorded /// 0030324 // lung development // non-traceable author statement /// 0030501 // positive regulation of bone mineralization // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0030856 // regulation of epithelial cell differentiation // traceable author statement /// 0030879 // mammary gland development // inferred from electronic annotation /// 0030879 // mammary gland development // not recorded /// 0032570 // response to progesterone stimulus // inferred from electronic annotation /// 0032570 // response to progesterone stimulus // not recorded /// 0032967 // positive regulation of collagen biosynthetic process // inferred from electronic annotation /// 0032967 // positive regulation of collagen biosynthetic process // not recorded /// 0034616 // response to laminar fluid shear stress // inferred from expression pattern /// 0040007 // growth // inferred from electronic annotation /// 0042060 // wound healing // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from direct assay /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0043932 // ossification involved in bone remodeling // inferred from electronic annotation /// 0043932 // ossification involved in bone remodeling // not recorded /// 0045216 // cell-cell junction organization // inferred from electronic annotation /// 0045216 // cell-cell junction organization // not recorded /// 0045601 // regulation of endothelial cell differentiation // traceable author statement /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048286 // lung alveolus development // not recorded /// 0048565 // digestive tract development // inferred from expression pattern /// 0048702 // embryonic neurocranium morphogenesis // inferred from direct assay /// 0048839 // inner ear development // inferred from expression pattern /// 0050678 // regulation of epithelial cell proliferation // traceable author statement /// 0050714 // positive regulation of protein secretion // inferred from electronic annotation /// 0050714 // positive regulation of protein secretion // not recorded /// 0051491 // positive regulation of filopodium assembly // inferred from electronic annotation /// 0051491 // positive regulation of filopodium assembly // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0060021 // palate development // not recorded /// 0060364 // frontal suture morphogenesis // inferred from expression pattern /// 0060391 // positive regulation of SMAD protein nuclear translocation // not recorded /// 0070483 // detection of hypoxia // inferred from electronic annotation /// 0070483 // detection of hypoxia // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay /// 0030315 // T-tubule // inferred from direct assay /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded /// 0031093 // platelet alpha granule lumen // not recorded /// 0043025 // neuronal cell body // inferred from direct assay 0005114 // type II transforming growth factor beta receptor binding // inferred from electronic annotation /// 0005114 // type II transforming growth factor beta receptor binding // not recorded /// 0005160 // transforming growth factor beta receptor binding // traceable author statement /// 0005160 // transforming growth factor beta receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0034713 // type I transforming growth factor beta receptor binding // inferred from electronic annotation /// 0034713 // type I transforming growth factor beta receptor binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0050431 // transforming growth factor beta binding // inferred from electronic annotation /// 0050431 // transforming growth factor beta binding // not recorded 1367860_a_at X83537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X83537.1 /DB_XREF=gi:805012 /GEN=rat 29 /FEA=mRNA /CNT=1 /TID=Rn.10371.2 /TIER=ConsEnd /STK=0 /UG=Rn.10371 /LL=81707 /DEF=Rattus norvegicus mRNA for membrane-type matrix metalloproteinase. /PROD=MT-MMP X83537 matrix metallopeptidase 14 (membrane-inserted) Mmp14 81707 NM_031056 0001503 // ossification // inferred from expression pattern /// 0001525 // angiogenesis // inferred from expression pattern /// 0001541 // ovarian follicle development // inferred from expression pattern /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001935 // endothelial cell proliferation // inferred from expression pattern /// 0006508 // proteolysis // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0031638 // zymogen activation // inferred from electronic annotation /// 0031638 // zymogen activation // not recorded /// 0043615 // astrocyte cell migration // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // not recorded /// 0048771 // tissue remodeling // inferred from direct assay /// 0051895 // negative regulation of focal adhesion assembly // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from physical interaction /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016504 // peptidase activator activity // inferred from mutant phenotype /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367861_at NM_024147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024147.1 /DB_XREF=gi:13162334 /GEN=Evl /FEA=FLmRNA /CNT=19 /TID=Rn.28912.1 /TIER=FL+Stack /STK=15 /UG=Rn.28912 /LL=79115 /DEF=Rattus norvegicus RNB6 (Evl), mRNA. /PROD=RNB6 /FL=gb:NM_024147.1 gb:U70211.1 NM_024147 Enah/Vasp-like Evl 79115 NM_024147 0006928 // cellular component movement // non-traceable author statement /// 0007411 // axon guidance // non-traceable author statement /// 0007417 // central nervous system development // non-traceable author statement /// 0007417 // central nervous system development // traceable author statement /// 0008154 // actin polymerization or depolymerization // not recorded /// 0008154 // actin polymerization or depolymerization // inferred from sequence or structural similarity 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // inferred from sequence or structural similarity /// 0030027 // lamellipodium // not recorded /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0030027 // lamellipodium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005522 // profilin binding // not recorded /// 0017124 // SH3 domain binding // not recorded /// 0017124 // SH3 domain binding // inferred from sequence or structural similarity /// 0017124 // SH3 domain binding // inferred from electronic annotation 1367862_at NM_053338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053338.1 /DB_XREF=gi:16758053 /GEN=Rrad /FEA=FLmRNA /CNT=17 /TID=Rn.11189.1 /TIER=FL+Stack /STK=15 /UG=Rn.11189 /LL=83521 /DEF=Rattus norvegicus Ras-related associated with diabetes (Rrad), mRNA. /PROD=Ras-related associated with diabetes /FL=gb:U12187.1 gb:NM_053338.1 NM_053338 Ras-related associated with diabetes Rrad 83521 NM_053338 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1367863_at NM_080897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080897.1 /DB_XREF=gi:18266701 /GEN=Bnip1 /FEA=FLmRNA /CNT=17 /TID=Rn.16757.1 /TIER=FL+Stack /STK=15 /UG=Rn.16757 /DEF=Rattus norvegicus BCL2adenovirus E1B 19kD interacting protein 1 (Bnip1), mRNA. /PROD=BCL2adenovirus E1B 19kD interacting protein 1 /FL=gb:AF454391.1 gb:NM_080897.1 NM_080897 BCL2/adenovirus E1B interacting protein 1 Bnip1 140932 NM_080897 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // inferred from expression pattern /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from sequence or structural similarity /// 0007029 // endoplasmic reticulum organization // not recorded /// 0007029 // endoplasmic reticulum organization // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016320 // endoplasmic reticulum membrane fusion // not recorded /// 0016320 // endoplasmic reticulum membrane fusion // inferred from sequence or structural similarity 0000139 // Golgi membrane // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005635 // nuclear envelope // inferred from sequence or structural similarity /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031201 // SNARE complex // not recorded /// 0031201 // SNARE complex // inferred from sequence or structural similarity /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from sequence or structural similarity 0005515 // protein binding // not recorded 1367864_at NM_031715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031715.1 /DB_XREF=gi:13929001 /GEN=Pfkm /FEA=FLmRNA /CNT=25 /TID=Rn.11004.1 /TIER=FL+Stack /STK=15 /UG=Rn.11004 /LL=65152 /DEF=Rattus norvegicus phosphofructokinase, muscle (Pfkm), mRNA. /PROD=phosphofructokinase, muscle /FL=gb:U25651.1 gb:NM_031715.1 NM_031715 phosphofructokinase, muscle Pfkm 65152 NM_031715 0001678 // cellular glucose homeostasis // non-traceable author statement /// 0006002 // fructose 6-phosphate metabolic process // inferred from direct assay /// 0006002 // fructose 6-phosphate metabolic process // not recorded /// 0006002 // fructose 6-phosphate metabolic process // inferred from electronic annotation /// 0006096 // glycolysis // inferred from direct assay /// 0006096 // glycolysis // not recorded /// 0006096 // glycolysis // inferred from electronic annotation /// 0030388 // fructose 1,6-bisphosphate metabolic process // inferred from direct assay /// 0032024 // positive regulation of insulin secretion // inferred from electronic annotation /// 0032024 // positive regulation of insulin secretion // not recorded /// 0042593 // glucose homeostasis // not recorded /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0046716 // muscle cell homeostasis // inferred from electronic annotation /// 0046716 // muscle cell homeostasis // not recorded /// 0046835 // carbohydrate phosphorylation // not recorded /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0051259 // protein oligomerization // not recorded /// 0051289 // protein homotetramerization // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005945 // 6-phosphofructokinase complex // inferred from electronic annotation /// 0005945 // 6-phosphofructokinase complex // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003872 // 6-phosphofructokinase activity // inferred from direct assay /// 0003872 // 6-phosphofructokinase activity // not recorded /// 0003872 // 6-phosphofructokinase activity // inferred from sequence or structural similarity /// 0003872 // 6-phosphofructokinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from direct assay /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008443 // phosphofructokinase activity // inferred from mutant phenotype /// 0008443 // phosphofructokinase activity // not recorded /// 0008443 // phosphofructokinase activity // non-traceable author statement /// 0008443 // phosphofructokinase activity // inferred from electronic annotation /// 0016208 // AMP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019900 // kinase binding // inferred from electronic annotation /// 0019900 // kinase binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070061 // fructose binding // not recorded /// 0070061 // fructose binding // inferred from electronic annotation /// 0070095 // fructose-6-phosphate binding // inferred from direct assay 1367865_at NM_133421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133421.1 /DB_XREF=gi:19173793 /GEN=Lkap /FEA=FLmRNA /CNT=19 /TID=Rn.27366.1 /TIER=FL+Stack /STK=15 /UG=Rn.27366 /DEF=Rattus norvegicus limkain b1 (Lkap), mRNA. /PROD=limkain b1 /FL=gb:NM_133421.1 gb:AB012133.1 NM_133421 limkain b1 Lkap 170946 NM_133421 0005777 // peroxisome // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1367866_at NM_019153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019153.1 /DB_XREF=gi:9506586 /GEN=Fbln5 /FEA=FLmRNA /CNT=19 /TID=Rn.1699.1 /TIER=FL+Stack /STK=15 /UG=Rn.1699 /LL=29158 /DEF=Rattus norvegicus fibulin 5 (Fbln5), mRNA. /PROD=fibulin 5 /FL=gb:NM_019153.1 gb:AF112153.1 gb:AF137350.1 NM_019153 fibulin 5 Fbln5 29158 NM_019153 0001558 // regulation of cell growth // inferred from expression pattern /// 0007155 // cell adhesion // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1367867_at NM_013222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013222.1 /DB_XREF=gi:7549739 /GEN=ALR /FEA=FLmRNA /CNT=18 /TID=Rn.11039.1 /TIER=FL+Stack /STK=15 /UG=Rn.11039 /LL=27100 /DEF=Rattus norvegicus augmenter of liver regeneration (ALR), mRNA. /PROD=augmenter of liver regeneration /FL=gb:D30735.1 gb:NM_013222.1 NM_013222 growth factor, augmenter of liver regeneration Gfer 27100 NM_013222 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016972 // thiol oxidase activity // inferred from electronic annotation 1367868_at NM_031708 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031708.1 /DB_XREF=gi:13928989 /GEN=Gp110-pending /FEA=FLmRNA /CNT=16 /TID=Rn.9320.1 /TIER=FL+Stack /STK=15 /UG=Rn.9320 /LL=65138 /DEF=Rattus norvegicus glycoprotein 110 (Gp110-pending), mRNA. /PROD=glycoprotein 110 /FL=gb:AB032742.1 gb:NM_031708.1 NM_031708 adhesion regulating molecule 1 Adrm1 65138 NM_031708 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0043248 // proteasome assembly // not recorded /// 0043248 // proteasome assembly // inferred from sequence or structural similarity 0000502 // proteasome complex // not recorded /// 0000502 // proteasome complex // inferred from sequence or structural similarity /// 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0002020 // protease binding // not recorded /// 0061133 // endopeptidase activator activity // not recorded /// 0061133 // endopeptidase activator activity // inferred from sequence or structural similarity /// 0070628 // proteasome binding // not recorded 1367869_at NM_057153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057153.1 /DB_XREF=gi:16924017 /GEN=Oxr1 /FEA=FLmRNA /CNT=99 /TID=Rn.4252.1 /TIER=FL+Stack /STK=14 /UG=Rn.4252 /LL=117520 /DEF=Rattus norvegicus oxidation resistance 1 (Oxr1), mRNA. /PROD=oxidation resistance 1 /FL=gb:AF333986.1 gb:NM_057153.1 NM_057153 oxidation resistance 1 Oxr1 117520 NM_001197332 /// NM_001197907 /// NM_057153 0006979 // response to oxidative stress // traceable author statement /// 0016998 // cell wall macromolecule catabolic process // inferred from electronic annotation 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1367870_at NM_032614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032614.1 /DB_XREF=gi:14249133 /GEN=Txnl2 /FEA=FLmRNA /CNT=24 /TID=Rn.3578.1 /TIER=FL+Stack /STK=14 /UG=Rn.3578 /LL=58815 /DEF=Rattus norvegicus thioredoxin-like 2 (Txnl2), mRNA. /PROD=thioredoxin-like 2 /FL=gb:AF118651.1 gb:NM_032614.1 NM_032614 glutaredoxin 3 Glrx3 58815 NM_032614 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002026 // regulation of the force of heart contraction // not recorded /// 0010614 // negative regulation of cardiac muscle hypertrophy // inferred from electronic annotation /// 0010614 // negative regulation of cardiac muscle hypertrophy // not recorded /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0030018 // Z disc // not recorded 0005080 // protein kinase C binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation 1367871_at NM_031543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031543.1 /DB_XREF=gi:13928733 /GEN=Cyp2e1 /FEA=FLmRNA /CNT=22 /TID=Rn.1372.1 /TIER=FL+Stack /STK=14 /UG=Rn.1372 /LL=25086 /DEF=Rattus norvegicus Cytochrome P450, subfamily 2e1 (ethanol-inducible) (Cyp2e1), mRNA. /PROD=cytochrome P450, subfamily 2e1(ethanol-inducible) /FL=gb:J02627.1 gb:NM_031543.1 gb:AF061442.1 NM_031543 cytochrome P450, family 2, subfamily e, polypeptide 1 Cyp2e1 25086 NM_031543 0006805 // xenobiotic metabolic process // non-traceable author statement /// 0008152 // metabolic process // not recorded /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // not recorded /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0016098 // monoterpenoid metabolic process // inferred from electronic annotation /// 0016098 // monoterpenoid metabolic process // not recorded /// 0017144 // drug metabolic process // inferred from electronic annotation /// 0017144 // drug metabolic process // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0046483 // heterocycle metabolic process // inferred from electronic annotation /// 0046483 // heterocycle metabolic process // not recorded /// 0055114 // oxidation reduction // inferred from direct assay /// 0055114 // oxidation reduction // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0000139 // Golgi membrane // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031227 // intrinsic to endoplasmic reticulum membrane // inferred from direct assay 0004497 // monooxygenase activity // not recorded /// 0004497 // monooxygenase activity // traceable author statement /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0010181 // FMN binding // inferred by curator /// 0016491 // oxidoreductase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016709 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from direct assay /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0019825 // oxygen binding // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0020037 // heme binding // inferred from electronic annotation /// 0020037 // heme binding // not recorded /// 0020037 // heme binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1367872_at NM_017277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017277.1 /DB_XREF=gi:8392871 /GEN=Ap1b1 /FEA=FLmRNA /CNT=23 /TID=Rn.37383.1 /TIER=FL+Stack /STK=14 /UG=Rn.37383 /LL=29663 /DEF=Rattus norvegicus Adaptor protein complex AP-1, beta 1 subunit (Ap1b1), mRNA. /PROD=Adaptor protein complex AP-1, beta 1 subunit /FL=gb:M77245.1 gb:NM_017277.1 NM_017277 adaptor-related protein complex 1, beta 1 subunit Ap1b1 29663 NM_017277 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0006897 // endocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0048268 // clathrin coat assembly // inferred from direct assay 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030118 // clathrin coat // inferred by curator /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0030665 // clathrin coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0030276 // clathrin binding // inferred by curator 1367873_at NM_031785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031785.1 /DB_XREF=gi:13929109 /GEN=Atp6s1 /FEA=FLmRNA /CNT=23 /TID=Rn.793.1 /TIER=FL+Stack /STK=14 /UG=Rn.793 /LL=83615 /DEF=Rattus norvegicus ATPase, H+ transporting, lysosomal (vacuolar proton pump), subunit 1 (Atp6s1), mRNA. /PROD=ATPase, H+ transporting, lysosomal (vacuolarproton pump), subunit 1 /FL=gb:AF035387.1 gb:NM_031785.1 NM_031785 ATPase, H+ transporting, lysosomal accessory protein 1 Atp6ap1 83615 NM_031785 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0008219 // cell death // inferred from mutant phenotype /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation 0005773 // vacuole // inferred from electronic annotation /// 0005774 // vacuolar membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0033180 // proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0046933 // hydrogen ion transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 1367874_at AA849961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849961 /DB_XREF=gi:2937501 /DB_XREF=EST192728 /CLONE=RMUAL13 /FEA=FLmRNA /CNT=44 /TID=Rn.4169.1 /TIER=Stack /STK=8 /UG=Rn.4169 /LL=85428 /UG_GENE=Tc10 /UG_TITLE=ras-like protein /FL=gb:AB031482.1 gb:NM_053522.1 AA849961 ras homolog gene family, member Q Rhoq 85428 NM_053522 0006184 // GTP catabolic process // not recorded /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // not recorded /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation /// 0030866 // cortical actin cytoskeleton organization // not recorded /// 0032869 // cellular response to insulin stimulus // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0046326 // positive regulation of glucose import // inferred from electronic annotation /// 0046326 // positive regulation of glucose import // not recorded /// 0051491 // positive regulation of filopodium assembly // inferred from electronic annotation /// 0051491 // positive regulation of filopodium assembly // not recorded /// 0090005 // negative regulation of establishment of protein localization in plasma membrane // inferred from electronic annotation /// 0090005 // negative regulation of establishment of protein localization in plasma membrane // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005884 // actin filament // inferred from electronic annotation /// 0005884 // actin filament // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005522 // profilin binding // inferred from electronic annotation /// 0005522 // profilin binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0032427 // GBD domain binding // inferred from electronic annotation /// 0032427 // GBD domain binding // not recorded 1367875_at NM_031030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031030.1 /DB_XREF=gi:13591946 /GEN=Gak /FEA=FLmRNA /CNT=22 /TID=Rn.11012.1 /TIER=FL+Stack /STK=14 /UG=Rn.11012 /LL=81659 /DEF=Rattus norvegicus cyclin G-associated kinase (Gak), mRNA. /PROD=cyclin G-associated kinase /FL=gb:NM_031030.1 gb:D38560.1 NM_031030 cyclin G associated kinase Gak 81659 NM_031030 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030332 // cyclin binding // inferred from direct assay /// 0031072 // heat shock protein binding // inferred from electronic annotation 1367876_at NM_053778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053778.1 /DB_XREF=gi:16758615 /GEN=Imp13 /FEA=FLmRNA /CNT=18 /TID=Rn.14252.1 /TIER=FL+Stack /STK=14 /UG=Rn.14252 /LL=116458 /DEF=Rattus norvegicus importin 13 (Imp13), mRNA. /PROD=importin 13 /FL=gb:NM_053778.1 gb:AF110195.1 NM_053778 importin 13 Ipo13 116458 NM_053778 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006606 // protein import into nucleus // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0042564 // NLS-dependent protein nuclear import complex // non-traceable author statement 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation 1367877_at NM_013173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013173.1 /DB_XREF=gi:6981287 /GEN=Slc11a2 /FEA=FLmRNA /CNT=22 /TID=Rn.11418.1 /TIER=FL+Stack /STK=14 /UG=Rn.11418 /LL=25715 /DEF=Rattus norvegicus Solute carrier family 11 member 2 (natural resistance-associated macrophage protein 2) (Slc11a2), mRNA. /PROD=natural resistance-associated macrophage protein2 /FL=gb:NM_013173.1 gb:AF008439.1 NM_013173 solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2 Slc11a2 25715 NM_013173 0000041 // transition metal ion transport // inferred from direct assay /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0003032 // detection of oxygen // inferred from electronic annotation /// 0003032 // detection of oxygen // not recorded /// 0006778 // porphyrin metabolic process // not recorded /// 0006778 // porphyrin metabolic process // inferred from electronic annotation /// 0006779 // porphyrin biosynthetic process // not recorded /// 0006779 // porphyrin biosynthetic process // inferred from electronic annotation /// 0006783 // heme biosynthetic process // inferred from electronic annotation /// 0006783 // heme biosynthetic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006824 // cobalt ion transport // not recorded /// 0006824 // cobalt ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // not recorded /// 0006826 // iron ion transport // not recorded /// 0006826 // iron ion transport // inferred from electronic annotation /// 0006828 // manganese ion transport // inferred from electronic annotation /// 0006828 // manganese ion transport // not recorded /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0007611 // learning or memory // inferred from electronic annotation /// 0007611 // learning or memory // not recorded /// 0010039 // response to iron ion // inferred from expression pattern /// 0010039 // response to iron ion // not recorded /// 0010039 // response to iron ion // inferred from electronic annotation /// 0010042 // response to manganese ion // inferred from mutant phenotype /// 0010288 // response to lead ion // inferred from expression pattern /// 0015675 // nickel ion transport // inferred from electronic annotation /// 0015675 // nickel ion transport // not recorded /// 0015676 // vanadium ion transport // not recorded /// 0015676 // vanadium ion transport // inferred from electronic annotation /// 0015684 // ferrous iron transport // inferred from mutant phenotype /// 0015684 // ferrous iron transport // not recorded /// 0015684 // ferrous iron transport // inferred from electronic annotation /// 0015692 // lead ion transport // not recorded /// 0015692 // lead ion transport // inferred from electronic annotation /// 0015992 // proton transport // not recorded /// 0015992 // proton transport // inferred from electronic annotation /// 0034599 // cellular response to oxidative stress // inferred from electronic annotation /// 0034599 // cellular response to oxidative stress // not recorded /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0048813 // dendrite morphogenesis // inferred from electronic annotation /// 0048813 // dendrite morphogenesis // not recorded /// 0048821 // erythrocyte development // inferred from electronic annotation /// 0048821 // erythrocyte development // not recorded /// 0060586 // multicellular organismal iron ion homeostasis // inferred from electronic annotation /// 0060586 // multicellular organismal iron ion homeostasis // not recorded /// 0070574 // cadmium ion transmembrane transport // not recorded /// 0070574 // cadmium ion transmembrane transport // inferred from electronic annotation /// 0070627 // ferrous iron import // inferred from electronic annotation /// 0070627 // ferrous iron import // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005765 // lysosomal membrane // not recorded /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005770 // late endosome // not recorded /// 0005770 // late endosome // inferred from electronic annotation /// 0005773 // vacuole // inferred from electronic annotation /// 0005773 // vacuole // not recorded /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005903 // brush border // inferred from electronic annotation /// 0005903 // brush border // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0012505 // endomembrane system // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0031902 // late endosome membrane // inferred from direct assay /// 0031902 // late endosome membrane // not recorded /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from direct assay /// 0045177 // apical part of cell // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045178 // basal part of cell // inferred from electronic annotation /// 0045178 // basal part of cell // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0055037 // recycling endosome // inferred from electronic annotation /// 0055037 // recycling endosome // not recorded /// 0070826 // paraferritin complex // inferred from electronic annotation /// 0070826 // paraferritin complex // not recorded 0005215 // transporter activity // inferred from electronic annotation /// 0005375 // copper ion transmembrane transporter activity // inferred from direct assay /// 0005375 // copper ion transmembrane transporter activity // not recorded /// 0005375 // copper ion transmembrane transporter activity // inferred from electronic annotation /// 0005381 // iron ion transmembrane transporter activity // inferred from direct assay /// 0005381 // iron ion transmembrane transporter activity // not recorded /// 0005381 // iron ion transmembrane transporter activity // inferred from electronic annotation /// 0005384 // manganese ion transmembrane transporter activity // inferred from direct assay /// 0005384 // manganese ion transmembrane transporter activity // not recorded /// 0005384 // manganese ion transmembrane transporter activity // inferred from electronic annotation /// 0005385 // zinc ion transmembrane transporter activity // inferred from electronic annotation /// 0005385 // zinc ion transmembrane transporter activity // not recorded /// 0005506 // iron ion binding // inferred from direct assay /// 0005507 // copper ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from direct assay /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0015078 // hydrogen ion transmembrane transporter activity // not recorded /// 0015082 // di-, tri-valent inorganic cation transmembrane transporter activity // not recorded /// 0015082 // di-, tri-valent inorganic cation transmembrane transporter activity // inferred from electronic annotation /// 0015085 // calcium ion transmembrane transporter activity // not recorded /// 0015086 // cadmium ion transmembrane transporter activity // inferred from direct assay /// 0015086 // cadmium ion transmembrane transporter activity // not recorded /// 0015086 // cadmium ion transmembrane transporter activity // inferred from electronic annotation /// 0015087 // cobalt ion transmembrane transporter activity // inferred from direct assay /// 0015087 // cobalt ion transmembrane transporter activity // not recorded /// 0015087 // cobalt ion transmembrane transporter activity // inferred from electronic annotation /// 0015093 // ferrous iron transmembrane transporter activity // inferred from mutant phenotype /// 0015093 // ferrous iron transmembrane transporter activity // not recorded /// 0015093 // ferrous iron transmembrane transporter activity // inferred from electronic annotation /// 0015094 // lead ion transmembrane transporter activity // inferred from direct assay /// 0015094 // lead ion transmembrane transporter activity // not recorded /// 0015094 // lead ion transmembrane transporter activity // inferred from electronic annotation /// 0015099 // nickel ion transmembrane transporter activity // inferred from direct assay /// 0015099 // nickel ion transmembrane transporter activity // not recorded /// 0015099 // nickel ion transmembrane transporter activity // inferred from electronic annotation /// 0015100 // vanadium ion transmembrane transporter activity // inferred from electronic annotation /// 0015100 // vanadium ion transmembrane transporter activity // not recorded /// 0015295 // solute:hydrogen symporter activity // inferred from electronic annotation /// 0015295 // solute:hydrogen symporter activity // not recorded /// 0016151 // nickel ion binding // inferred from direct assay /// 0030145 // manganese ion binding // inferred from direct assay /// 0046870 // cadmium ion binding // inferred from direct assay /// 0050897 // cobalt ion binding // inferred from direct assay /// 0070835 // chromium ion transmembrane transporter activity // not recorded 1367878_at NM_031704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031704.1 /DB_XREF=gi:13928981 /GEN=Stx5a /FEA=FLmRNA /CNT=19 /TID=Rn.5782.1 /TIER=FL+Stack /STK=14 /UG=Rn.5782 /LL=65134 /DEF=Rattus norvegicus syntaxin 5a (Stx5a), mRNA. /PROD=syntaxin 5a /FL=gb:L20822.1 gb:NM_031704.1 NM_031704 syntaxin 5 Stx5 65134 NM_031704 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // not recorded 0000139 // Golgi membrane // inferred from mutant phenotype /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005783 // endoplasmic reticulum // inferred from mutant phenotype /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0033116 // ER-Golgi intermediate compartment membrane // inferred from electronic annotation 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005484 // SNAP receptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1367879_at NM_024488 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024488.1 /DB_XREF=gi:13324705 /GEN=C53 /FEA=FLmRNA /CNT=18 /TID=Rn.3727.1 /TIER=FL+Stack /STK=14 /UG=Rn.3727 /LL=80278 /DEF=Rattus norvegicus CDK5 activator-binding protein C53 (C53), mRNA. /PROD=CDK5 activator-binding protein C53 /FL=gb:AF177476.1 gb:NM_024488.1 NM_024488 CDK5 regulatory subunit associated protein 3 Cdk5rap3 80278 NM_024488 0000079 // regulation of cyclin-dependent protein kinase activity // inferred from direct assay /// 0007420 // brain development // traceable author statement /// 0008283 // cell proliferation // non-traceable author statement /// 0045664 // regulation of neuron differentiation // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0042808 // neuronal Cdc2-like kinase binding // traceable author statement 1367880_at NM_012974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012974.1 /DB_XREF=gi:6981141 /GEN=Lamb2 /FEA=FLmRNA /CNT=24 /TID=Rn.774.1 /TIER=FL+Stack /STK=14 /UG=Rn.774 /LL=25473 /DEF=Rattus norvegicus Laminin chain beta 2 (Lamb2), mRNA. /PROD=laminin chain beta 2 /FL=gb:NM_012974.1 NM_012974 laminin, beta 2 Lamb2 25473 NM_012974 0007155 // cell adhesion // inferred from electronic annotation /// 0048677 // axon extension involved in regeneration // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005608 // laminin-3 complex // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0031012 // extracellular matrix // not recorded 1367881_at NM_013016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013016.1 /DB_XREF=gi:13357219 /GEN=Ptpns1 /FEA=FLmRNA /CNT=16 /TID=Rn.53971.1 /TIER=FL+Stack /STK=14 /UG=Rn.53971 /LL=25528 /DEF=Rattus norvegicus Protein tyrosine phosphatase, non-receptor type substrate 1 (SHP substrate 1) (Ptpns1), mRNA. /PROD=protein tyrosine phosphatase, non-receptor typesubstrate 1 (SHP substrate 1) /FL=gb:NM_013016.1 gb:D85183.1 NM_013016 signal-regulatory protein alpha Sirpa 25528 NM_013016 0006910 // phagocytosis, recognition // inferred from electronic annotation /// 0006910 // phagocytosis, recognition // not recorded /// 0006911 // phagocytosis, engulfment // inferred from electronic annotation /// 0006911 // phagocytosis, engulfment // not recorded /// 0006928 // cellular component movement // inferred from electronic annotation /// 0006928 // cellular component movement // not recorded /// 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0007010 // cytoskeleton organization // not recorded /// 0007015 // actin filament organization // inferred from electronic annotation /// 0007015 // actin filament organization // not recorded /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0016477 // cell migration // inferred from direct assay /// 0050766 // positive regulation of phagocytosis // inferred from electronic annotation /// 0050766 // positive regulation of phagocytosis // not recorded 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0045309 // protein phosphorylated amino acid binding // not recorded 1367882_at NM_030995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030995.1 /DB_XREF=gi:13591885 /GEN=Map1a /FEA=FLmRNA /CNT=27 /TID=Rn.11402.1 /TIER=FL+Stack /STK=14 /UG=Rn.11402 /LL=25152 /DEF=Rattus norvegicus Microtubule-associated protein 1a (Map1a), mRNA. /PROD=microtubule-associated protein 1a /FL=gb:M83196.1 gb:NM_030995.1 NM_030995 microtubule-associated protein 1A Map1a 25152 NM_030995 0007026 // negative regulation of microtubule depolymerization // inferred from direct assay /// 0007605 // sensory perception of sound // not recorded 0005829 // cytosol // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred from direct assay 0003779 // actin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005518 // collagen binding // inferred from physical interaction 1367883_at NM_022509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022509.1 /DB_XREF=gi:11968083 /GEN=Smn /FEA=FLmRNA /CNT=20 /TID=Rn.1119.1 /TIER=FL+Stack /STK=14 /UG=Rn.1119 /LL=64301 /DEF=Rattus norvegicus survival motor neuron (Smn), mRNA. /PROD=survival motor neuron /FL=gb:NM_022509.1 gb:AF044910.1 gb:U75369.1 NM_022509 survival motor neuron 1 Smn1 64301 NM_022509 0000245 // spliceosome assembly // traceable author statement /// 0000387 // spliceosomal snRNP assembly // not recorded /// 0006397 // mRNA processing // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from expression pattern /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0015030 // Cajal body // inferred from direct assay /// 0015030 // Cajal body // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0017134 // fibroblast growth factor binding // inferred from physical interaction 1367884_at NM_053589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053589.1 /DB_XREF=gi:16758367 /GEN=Rab14 /FEA=FLmRNA /CNT=20 /TID=Rn.6008.1 /TIER=FL+Stack /STK=14 /UG=Rn.6008 /LL=94197 /DEF=Rattus norvegicus GTPase Rab14 (Rab14), mRNA. /PROD=GTPase Rab14 /FL=gb:M83680.1 gb:NM_053589.1 NM_053589 RAB14, member RAS oncogene family Rab14 94197 NM_053589 0006810 // transport // inferred from electronic annotation /// 0006895 // Golgi to endosome transport // traceable author statement /// 0007264 // small GTPase mediated signal transduction // non-traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // non-traceable author statement /// 0007589 // body fluid secretion // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // non-traceable author statement /// 0032880 // regulation of protein localization // inferred from direct assay /// 0032880 // regulation of protein localization // inferred from mutant phenotype /// 0045176 // apical protein localization // inferred from direct assay /// 0046907 // intracellular transport // non-traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005795 // Golgi stack // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030133 // transport vesicle // inferred from direct assay /// 0030140 // trans-Golgi network transport vesicle // inferred from direct assay /// 0042175 // nuclear membrane-endoplasmic reticulum network // inferred from direct assay /// 0042599 // lamellar body // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // inferred from direct assay /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0003924 // GTPase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // not recorded /// 0019003 // GDP binding // inferred from sequence or structural similarity /// 0019003 // GDP binding // inferred from electronic annotation 1367885_at NM_031587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031587.1 /DB_XREF=gi:13928795 /GEN=Pxmp2 /FEA=FLmRNA /CNT=18 /TID=Rn.10292.1 /TIER=FL+Stack /STK=14 /UG=Rn.10292 /LL=29533 /DEF=Rattus norvegicus peroxisomal membrane protein 2, 22 kDa (Pxmp2), mRNA. /PROD=peroxisomal membrane protein 2, 22 kDa /FL=gb:NM_031587.1 NM_031587 peroxisomal membrane protein 2 Pxmp2 29533 NM_031587 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0005779 // integral to peroxisomal membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1367886_at NM_019246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019246.1 /DB_XREF=gi:9506956 /GEN=Pcsk7 /FEA=FLmRNA /CNT=17 /TID=Rn.10653.1 /TIER=FL+Stack /STK=14 /UG=Rn.10653 /LL=29606 /DEF=Rattus norvegicus proprotein convertase subtilisinkexin type 7 (Pcsk7), mRNA. /PROD=proprotein convertase subtilisinkexin type 7 /FL=gb:U36580.1 gb:NM_019246.1 NM_019246 proprotein convertase subtilisin/kexin type 7 Pcsk7 29606 NM_019246 0006508 // proteolysis // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // not recorded 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1367887_at NM_017024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017024.1 /DB_XREF=gi:8393702 /GEN=Lcat /FEA=FLmRNA /CNT=16 /TID=Rn.10481.1 /TIER=FL+Stack /STK=14 /UG=Rn.10481 /LL=24530 /DEF=Rattus norvegicus Lecithin-cholesterol acyltransferase (Lcat), mRNA. /PROD=lecithin-cholesterol acyltransferase /FL=gb:NM_017024.1 gb:U62803.1 NM_017024 lecithin cholesterol acyltransferase Lcat 24530 NM_017024 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // not recorded /// 0006656 // phosphatidylcholine biosynthetic process // inferred from electronic annotation /// 0006656 // phosphatidylcholine biosynthetic process // not recorded /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from direct assay /// 0008203 // cholesterol metabolic process // not recorded /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0030301 // cholesterol transport // not recorded /// 0030301 // cholesterol transport // inferred from electronic annotation /// 0034372 // very-low-density lipoprotein particle remodeling // inferred from electronic annotation /// 0034372 // very-low-density lipoprotein particle remodeling // not recorded /// 0034375 // high-density lipoprotein particle remodeling // inferred from electronic annotation /// 0034375 // high-density lipoprotein particle remodeling // not recorded /// 0034435 // cholesterol esterification // inferred from electronic annotation /// 0034435 // cholesterol esterification // not recorded /// 0042157 // lipoprotein metabolic process // inferred from direct assay /// 0042158 // lipoprotein biosynthetic process // inferred from electronic annotation /// 0042158 // lipoprotein biosynthetic process // not recorded /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0043691 // reverse cholesterol transport // inferred from electronic annotation /// 0043691 // reverse cholesterol transport // not recorded /// 0046688 // response to copper ion // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0034364 // high-density lipoprotein particle // inferred from electronic annotation /// 0034364 // high-density lipoprotein particle // not recorded 0004607 // phosphatidylcholine-sterol O-acyltransferase activity // inferred from direct assay /// 0004607 // phosphatidylcholine-sterol O-acyltransferase activity // not recorded /// 0004607 // phosphatidylcholine-sterol O-acyltransferase activity // inferred from electronic annotation /// 0004623 // phospholipase A2 activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0034186 // apolipoprotein A-I binding // inferred from electronic annotation /// 0034186 // apolipoprotein A-I binding // not recorded 1367888_at NM_053572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053572.1 /DB_XREF=gi:17865340 /GEN=KIAA1775 /FEA=FLmRNA /CNT=15 /TID=Rn.19780.1 /TIER=FL+Stack /STK=14 /UG=Rn.19780 /LL=93662 /DEF=Rattus norvegicus MT-protocadherin (KIAA1775), mRNA. /PROD=MT-protocadherin /FL=gb:AB053449.1 gb:NM_053572.1 NM_053572 protocadherin 21 Pcdh21 93662 NM_053572 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007601 // visual perception // inferred from electronic annotation /// 0009987 // cellular process // not recorded /// 0009987 // cellular process // inferred from electronic annotation /// 0045494 // photoreceptor cell maintenance // inferred from electronic annotation /// 0045494 // photoreceptor cell maintenance // not recorded /// 0050896 // response to stimulus // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1367889_at NM_134468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134468.1 /DB_XREF=gi:19745199 /GEN=Camk1 /FEA=FLmRNA /CNT=17 /TID=Rn.11018.1 /TIER=FL+Stack /STK=14 /UG=Rn.11018 /LL=171503 /DEF=Rattus norvegicus calciumcalmodulin-dependent protein kinase I (Camk1), mRNA. /PROD=calciumcalmodulin-dependent protein kinase I /FL=gb:L24907.1 gb:NM_134468.1 gb:L26288.1 NM_134468 calcium/calmodulin-dependent protein kinase I Camk1 171503 NM_134468 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006913 // nucleocytoplasmic transport // not recorded /// 0007165 // signal transduction // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0051149 // positive regulation of muscle cell differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005954 // calcium- and calmodulin-dependent protein kinase complex // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from direct assay /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1367890_at NM_022522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022522.2 /DB_XREF=gi:19923686 /GEN=Casp2 /FEA=FLmRNA /CNT=16 /TID=Rn.1438.1 /TIER=FL+Stack /STK=14 /UG=Rn.1438 /LL=64314 /DEF=Rattus norvegicus caspase 2 (Casp2), mRNA. /PROD=caspase 2 /FL=gb:U77933.1 gb:NM_022522.2 gb:AF136231.1 NM_022522 caspase 2 Casp2 64314 NM_022522 0001554 // luteolysis // inferred from expression pattern /// 0003407 // neural retina development // inferred from expression pattern /// 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // traceable author statement /// 0006915 // apoptosis // inferred from mutant phenotype /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0012501 // programmed cell death // traceable author statement /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0051605 // protein maturation by peptide bond cleavage // inferred from electronic annotation /// 0051605 // protein maturation by peptide bond cleavage // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // not recorded 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004197 // cysteine-type endopeptidase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1367891_a_at AF136232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF136232.1 /DB_XREF=gi:4928691 /FEA=FLmRNA /CNT=1 /TID=Rn.1438.2 /TIER=FL /STK=1 /UG=Rn.1438 /LL=64314 /UG_GENE=Casp2 /DEF=Rattus norvegicus caspase-2s mRNA, complete cds. /PROD=caspase-2s /FL=gb:AF136232.1 AF136232 caspase 2 Casp2 64314 NM_022522 0001554 // luteolysis // inferred from expression pattern /// 0003407 // neural retina development // inferred from expression pattern /// 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // traceable author statement /// 0006915 // apoptosis // inferred from mutant phenotype /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0012501 // programmed cell death // traceable author statement /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0051605 // protein maturation by peptide bond cleavage // inferred from electronic annotation /// 0051605 // protein maturation by peptide bond cleavage // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // not recorded 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004197 // cysteine-type endopeptidase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1367892_at NM_030872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030872.1 /DB_XREF=gi:13540704 /GEN=Pdk2 /FEA=FLmRNA /CNT=16 /TID=Rn.11363.1 /TIER=FL+Stack /STK=14 /UG=Rn.11363 /LL=81530 /DEF=Rattus norvegicus pyruvate dehydrogenase kinase 2 subunit p45 (PDK2) (Pdk2), mRNA. /PROD=pyruvate dehydrogenase kinase 2 subunit p45(PDK2) /FL=gb:AF237719.1 gb:U10357.1 gb:NM_030872.1 NM_030872 pyruvate dehydrogenase kinase, isozyme 2 Pdk2 81530 NM_030872 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0010510 // regulation of acetyl-CoA biosynthetic process from pyruvate // not recorded /// 0018106 // peptidyl-histidine phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0045254 // pyruvate dehydrogenase complex // inferred from direct assay 0000155 // two-component sensor activity // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0004673 // protein histidine kinase activity // inferred from electronic annotation /// 0004740 // pyruvate dehydrogenase (acetyl-transferring) kinase activity // inferred from direct assay /// 0004740 // pyruvate dehydrogenase (acetyl-transferring) kinase activity // inferred from mutant phenotype /// 0004740 // pyruvate dehydrogenase (acetyl-transferring) kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay 1367893_a_at NM_133414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133414.1 /DB_XREF=gi:19173779 /GEN=LOC170927 /FEA=FLmRNA /CNT=15 /TID=Rn.26586.1 /TIER=FL+Stack /STK=14 /UG=Rn.26586 /LL=170927 /DEF=Rattus norvegicus Mid-1-related chloride channel 1 (LOC170927), mRNA. /PROD=Mid-1-related chloride channel 1 /FL=gb:AB052922.1 gb:NM_133414.1 NM_133414 chloride channel CLIC-like 1 Clcc1 170927 NM_133414 0006821 // chloride transport // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // non-traceable author statement /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from mutant phenotype /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005792 // microsome // inferred from mutant phenotype /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from mutant phenotype /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005254 // chloride channel activity // inferred from direct assay /// 0005254 // chloride channel activity // inferred from mutant phenotype 1367894_at NM_022392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022392.1 /DB_XREF=gi:11693161 /GEN=LOC64194 /FEA=FLmRNA /CNT=51 /TID=Rn.772.1 /TIER=FL+Stack /STK=13 /UG=Rn.772 /LL=64194 /DEF=Rattus norvegicus growth response protein (CL-6) (LOC64194), mRNA. /PROD=growth response protein (CL-6) /FL=gb:L13619.1 gb:NM_022392.1 NM_022392 insulin induced gene 1 Insig1 64194 NM_022392 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // not recorded /// 0006695 // cholesterol biosynthetic process // not recorded /// 0006991 // response to sterol depletion // not recorded /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0010894 // negative regulation of steroid biosynthetic process // not recorded /// 0016126 // sterol biosynthetic process // not recorded /// 0030967 // ER-nuclear sterol response pathway // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0033993 // response to lipid // inferred from expression pattern /// 0042472 // inner ear morphogenesis // not recorded /// 0042474 // middle ear morphogenesis // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045599 // negative regulation of fat cell differentiation // not recorded /// 0045717 // negative regulation of fatty acid biosynthetic process // not recorded /// 0060021 // palate development // not recorded /// 0060363 // cranial suture morphogenesis // not recorded /// 0070542 // response to fatty acid // inferred from expression pattern 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1367895_at AI577321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577321 /DB_XREF=gi:4561697 /DB_XREF=UI-R-AD0-wg-h-02-0-UI.s1 /CLONE=UI-R-AD0-wg-h-02-0-UI /FEA=FLmRNA /CNT=56 /TID=Rn.11854.1 /TIER=Stack /STK=11 /UG=Rn.11854 /LL=117282 /UG_GENE=Hnrpk /UG_TITLE=heterogeneous nuclear ribonucleoprotein K /FL=gb:D17711.1 gb:NM_057141.1 AI577321 heterogeneous nuclear ribonucleoprotein K Hnrnpk 117282 NM_057141 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1367896_at AB030829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB030829.1 /DB_XREF=gi:9757515 /GEN=CA3 /FEA=FLmRNA /CNT=32 /TID=Rn.1647.1 /TIER=FL+Stack /STK=13 /UG=Rn.1647 /LL=54232 /DEF=Rattus norvegicus CA3 mRNA for carbonic anhydrase III, complete cds. /PROD=carbonic anhydrase III /FL=gb:AB030830.1 gb:AF037072.1 gb:AB030829.1 gb:NM_019292.1 gb:M22413.1 AB030829 carbonic anhydrase 3 Car3 54232 NM_019292 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation 0004089 // carbonate dehydratase activity // traceable author statement /// 0004089 // carbonate dehydratase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016151 // nickel ion binding // inferred from electronic annotation /// 0016151 // nickel ion binding // not recorded /// 0016829 // lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367897_at NM_012891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012891.1 /DB_XREF=gi:6978434 /GEN=Acadvl /FEA=FLmRNA /CNT=26 /TID=Rn.33319.1 /TIER=FL+Stack /STK=13 /UG=Rn.33319 /LL=25363 /DEF=Rattus norvegicus Acyl-Coa dehydrogenase, Very long chain (Acadvl), mRNA. /PROD=very long chain Acyl-Coa dehydrogenase /FL=gb:NM_012891.1 gb:D30647.1 NM_012891 acyl-Coenzyme A dehydrogenase, very long chain Acadvl 25363 NM_012891 0001659 // temperature homeostasis // inferred from electronic annotation /// 0001659 // temperature homeostasis // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0033539 // fatty acid beta-oxidation using acyl-CoA dehydrogenase // inferred from mutant phenotype /// 0033539 // fatty acid beta-oxidation using acyl-CoA dehydrogenase // not recorded /// 0033539 // fatty acid beta-oxidation using acyl-CoA dehydrogenase // inferred from electronic annotation /// 0042760 // very long-chain fatty acid catabolic process // inferred from mutant phenotype /// 0045717 // negative regulation of fatty acid biosynthetic process // inferred from electronic annotation /// 0045717 // negative regulation of fatty acid biosynthetic process // not recorded /// 0046322 // negative regulation of fatty acid oxidation // inferred from electronic annotation /// 0046322 // negative regulation of fatty acid oxidation // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0090181 // regulation of cholesterol metabolic process // inferred from electronic annotation /// 0090181 // regulation of cholesterol metabolic process // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded 0000062 // acyl-CoA binding // inferred from direct assay /// 0003995 // acyl-CoA dehydrogenase activity // inferred from direct assay /// 0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0004466 // long-chain-acyl-CoA dehydrogenase activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation /// 0017099 // very long-chain-acyl-CoA dehydrogenase activity // inferred from direct assay /// 0017099 // very long-chain-acyl-CoA dehydrogenase activity // inferred from mutant phenotype /// 0050660 // FAD or FADH2 binding // inferred from direct assay /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1367898_at AF441118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF441118.1 /DB_XREF=gi:16974770 /GEN=Bnip3l /FEA=FLmRNA /CNT=39 /TID=Rn.827.1 /TIER=FL+Stack /STK=8 /UG=Rn.827 /DEF=Rattus norvegicus BNIP3L protein (Bnip3l) mRNA, complete cds. /PROD=BNIP3L protein /FL=gb:AB077364.1 gb:NM_080888.1 gb:AF441118.1 AF441118 BCL2/adenovirus E1B interacting protein 3-like Bnip3l 140923 NM_080888 0006917 // induction of apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from sequence or structural similarity /// 0008634 // negative regulation of survival gene product expression // not recorded /// 0008634 // negative regulation of survival gene product expression // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0051607 // defense response to virus // not recorded /// 0051607 // defense response to virus // inferred from sequence or structural similarity 0005635 // nuclear envelope // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005740 // mitochondrial envelope // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005521 // lamin binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1367899_at NM_012950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012950.1 /DB_XREF=gi:6978820 /GEN=F2r /FEA=FLmRNA /CNT=26 /TID=Rn.2609.1 /TIER=FL+Stack /STK=13 /UG=Rn.2609 /LL=25439 /DEF=Rattus norvegicus Thrombin receptor (F2r), mRNA. /PROD=thrombin receptor /FL=gb:M81642.1 gb:NM_012950.1 NM_012950 coagulation factor II (thrombin) receptor F2r 25439 NM_012950 0000186 // activation of MAPKK activity // inferred from mutant phenotype /// 0002248 // connective tissue replacement involved in inflammatory response wound healing // inferred from electronic annotation /// 0002248 // connective tissue replacement involved in inflammatory response wound healing // not recorded /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007260 // tyrosine phosphorylation of STAT protein // inferred from electronic annotation /// 0007260 // tyrosine phosphorylation of STAT protein // not recorded /// 0007262 // STAT protein nuclear translocation // inferred from electronic annotation /// 0007262 // STAT protein nuclear translocation // not recorded /// 0007529 // establishment of synaptic specificity at neuromuscular junction // inferred from direct assay /// 0007596 // blood coagulation // traceable author statement /// 0007596 // blood coagulation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009611 // response to wounding // not recorded /// 0009611 // response to wounding // inferred from electronic annotation /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0016265 // death // inferred from electronic annotation /// 0016265 // death // not recorded /// 0030168 // platelet activation // inferred from electronic annotation /// 0030168 // platelet activation // not recorded /// 0030193 // regulation of blood coagulation // not recorded /// 0030193 // regulation of blood coagulation // inferred from electronic annotation /// 0030194 // positive regulation of blood coagulation // inferred from electronic annotation /// 0030194 // positive regulation of blood coagulation // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0032651 // regulation of interleukin-1 beta production // inferred from electronic annotation /// 0032651 // regulation of interleukin-1 beta production // not recorded /// 0032967 // positive regulation of collagen biosynthetic process // inferred from electronic annotation /// 0032967 // positive regulation of collagen biosynthetic process // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043280 // positive regulation of caspase activity // not recorded /// 0043280 // positive regulation of caspase activity // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045907 // positive regulation of vasoconstriction // inferred from direct assay /// 0045987 // positive regulation of smooth muscle contraction // inferred from direct assay /// 0046427 // positive regulation of JAK-STAT cascade // inferred from electronic annotation /// 0046427 // positive regulation of JAK-STAT cascade // not recorded /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // not recorded /// 0051209 // release of sequestered calcium ion into cytosol // inferred from mutant phenotype /// 0051209 // release of sequestered calcium ion into cytosol // inferred from electronic annotation /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // not recorded /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // inferred from mutant phenotype /// 0051928 // positive regulation of calcium ion transport // inferred from mutant phenotype /// 0051930 // regulation of sensory perception of pain // inferred from direct assay /// 0070493 // thrombin receptor signaling pathway // not recorded /// 0070493 // thrombin receptor signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031094 // platelet dense tubular network // inferred from electronic annotation /// 0031094 // platelet dense tubular network // not recorded /// 0031594 // neuromuscular junction // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0015057 // thrombin receptor activity // not recorded /// 0015057 // thrombin receptor activity // traceable author statement /// 0015057 // thrombin receptor activity // inferred from electronic annotation 1367900_at NM_031043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031043.1 /DB_XREF=gi:13591968 /GEN=Gyg /FEA=FLmRNA /CNT=22 /TID=Rn.3661.1 /TIER=FL+Stack /STK=13 /UG=Rn.3661 /LL=81675 /DEF=Rattus norvegicus glycogenin (Gyg), mRNA. /PROD=glycogenin /FL=gb:NM_031043.1 gb:AF021343.1 NM_031043 glycogenin 1 Gyg1 81675 NM_031043 0005978 // glycogen biosynthetic process // inferred from direct assay /// 0005978 // glycogen biosynthetic process // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005536 // glucose binding // inferred from direct assay /// 0008466 // glycogenin glucosyltransferase activity // inferred from direct assay /// 0008466 // glycogenin glucosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367901_at NM_017015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017015.1 /DB_XREF=gi:8393509 /GEN=Gusb /FEA=FLmRNA /CNT=21 /TID=Rn.3692.1 /TIER=FL+Stack /STK=13 /UG=Rn.3692 /LL=24434 /DEF=Rattus norvegicus Glucuronidase, beta (Gusb), mRNA. /PROD=glucuronidase, beta /FL=gb:NM_017015.1 gb:M13962.1 NM_017015 glucuronidase, beta Gusb 24434 NM_017015 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004566 // beta-glucuronidase activity // inferred from direct assay /// 0004566 // beta-glucuronidase activity // inferred from mutant phenotype /// 0004566 // beta-glucuronidase activity // not recorded /// 0004566 // beta-glucuronidase activity // inferred from electronic annotation /// 0005529 // sugar binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation 1367902_at NM_022396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022396.1 /DB_XREF=gi:11693167 /GEN=Gng11 /FEA=FLmRNA /CNT=19 /TID=Rn.892.1 /TIER=FL+Stack /STK=13 /UG=Rn.892 /LL=64199 /DEF=Rattus norvegicus guanine nucleotide binding protein gamma subunit 11 (Gng11), mRNA. /PROD=guanine nucleotide binding protein gamma subunit11 /FL=gb:NM_022396.1 gb:AF257110.1 NM_022396 guanine nucleotide binding protein (G protein), gamma 11 Gng11 64199 NM_022396 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation 1367903_at J05405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J05405.1 /DB_XREF=gi:204626 /FEA=FLmRNA /CNT=32 /TID=Rn.10241.1 /TIER=FL+Stack /STK=13 /UG=Rn.10241 /LL=79239 /UG_GENE=Hmox2 /UG_TITLE=heme oxygenase-2 non-reducing isoform /DEF=Rat heme oxygenase-2 (HO2) mRNA, complete cds. /FL=gb:NM_024387.1 gb:J05405.1 J05405 heme oxygenase (decycling) 2 Hmox2 79239 NM_024387 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0006788 // heme oxidation // traceable author statement /// 0006788 // heme oxidation // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0004392 // heme oxygenase (decyclizing) activity // inferred from direct assay /// 0004392 // heme oxygenase (decyclizing) activity // not recorded /// 0004392 // heme oxygenase (decyclizing) activity // traceable author statement /// 0004392 // heme oxygenase (decyclizing) activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0009055 // electron carrier activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367904_at NM_019278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019278.1 /DB_XREF=gi:9507040 /GEN=Resp18 /FEA=FLmRNA /CNT=21 /TID=Rn.2225.1 /TIER=FL+Stack /STK=13 /UG=Rn.2225 /LL=50561 /DEF=Rattus norvegicus regulated endocrine-specific protein 18 (Resp18), mRNA. /PROD=regulated endocrine-specific protein 18 /FL=gb:L25633.1 gb:NM_019278.1 NM_019278 regulated endocrine-specific protein 18 Resp18 50561 NM_019278 0005576 // extracellular region // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0048237 // rough endoplasmic reticulum lumen // inferred from direct assay 1367905_at NM_019370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019370.1 /DB_XREF=gi:9506848 /GEN=LOC54410 /FEA=FLmRNA /CNT=20 /TID=Rn.44.1 /TIER=FL+Stack /STK=13 /UG=Rn.44 /LL=54410 /DEF=Rattus norvegicus alkaline phosphodiesterase (LOC54410), mRNA. /PROD=alkaline phosphodiesterase /FL=gb:D30649.1 gb:U78788.1 gb:U78787.1 gb:NM_019370.1 NM_019370 ectonucleotide pyrophosphatase/phosphodiesterase 3 Enpp3 54410 NM_019370 0006796 // phosphate metabolic process // inferred from electronic annotation /// 0006796 // phosphate metabolic process // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009143 // nucleoside triphosphate catabolic process // inferred from electronic annotation /// 0009143 // nucleoside triphosphate catabolic process // not recorded /// 0030505 // inorganic diphosphate transport // not recorded /// 0051150 // regulation of smooth muscle cell differentiation // non-traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0009986 // cell surface // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004528 // phosphodiesterase I activity // traceable author statement /// 0004528 // phosphodiesterase I activity // inferred from electronic annotation /// 0004551 // nucleotide diphosphatase activity // traceable author statement /// 0004551 // nucleotide diphosphatase activity // inferred from electronic annotation /// 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030247 // polysaccharide binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047429 // nucleoside-triphosphate diphosphatase activity // inferred from electronic annotation /// 0047429 // nucleoside-triphosphate diphosphatase activity // not recorded 1367906_at NM_016988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_016988.1 /DB_XREF=gi:8392841 /GEN=Acp2 /FEA=FLmRNA /CNT=18 /TID=Rn.9816.1 /TIER=FL+Stack /STK=13 /UG=Rn.9816 /LL=24162 /DEF=Rattus norvegicus Acid phosphatase 2, lysozymal (Acp2), mRNA. /PROD=acid phosphatase 2, lysozymal /FL=gb:M27893.1 gb:NM_016988.1 NM_016988 acid phosphatase 2, lysosomal Acp2 24162 NM_016988 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0007040 // lysosome organization // inferred from electronic annotation /// 0007040 // lysosome organization // not recorded /// 0007268 // synaptic transmission // non-traceable author statement /// 0010033 // response to organic substance // inferred from direct assay /// 0016311 // dephosphorylation // not recorded 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0043202 // lysosomal lumen // inferred from electronic annotation 0001784 // phosphotyrosine binding // inferred from direct assay /// 0003993 // acid phosphatase activity // inferred from direct assay /// 0003993 // acid phosphatase activity // not recorded /// 0003993 // acid phosphatase activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation 1367907_a_at M19262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M19262.1 /DB_XREF=gi:203360 /FEA=FLmRNA /CNT=4 /TID=Rn.3440.2 /TIER=FL /STK=1 /UG=Rn.3440 /LL=116561 /UG_GENE=Cltb /UG_TITLE=clathrin, light polypeptide (Lcb) /DEF=Rat clathrin light chain (LCB3) mRNA, complete cds. /FL=gb:M19262.1 M19262 clathrin, light chain (Lcb) Cltb 116561 NM_053835 0006836 // neurotransmitter transport // non-traceable author statement /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // non-traceable author statement /// 0016183 // synaptic vesicle coating // non-traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030118 // clathrin coat // inferred from direct assay /// 0030125 // clathrin vesicle coat // non-traceable author statement /// 0030130 // clathrin coat of trans-Golgi network vesicle // inferred from electronic annotation /// 0030132 // clathrin coat of coated pit // non-traceable author statement /// 0030132 // clathrin coat of coated pit // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005326 // neurotransmitter transporter activity // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042277 // peptide binding // inferred from direct assay 1367908_at NM_133598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133598.1 /DB_XREF=gi:19424305 /GEN=Gcsh /FEA=FLmRNA /CNT=19 /TID=Rn.11520.1 /TIER=FL+Stack /STK=13 /UG=Rn.11520 /LL=171133 /DEF=Rattus norvegicus glycine cleavage system protein H (aminomethyl carrier) (Gcsh), mRNA. /PROD=glycine cleavage system protein H (aminomethylcarrier) /FL=gb:NM_133598.1 NM_133598 glycine cleavage system protein H (aminomethyl carrier) Gcsh 171133 NM_133598 0006546 // glycine catabolic process // inferred from electronic annotation /// 0019464 // glycine decarboxylation via glycine cleavage system // inferred from mutant phenotype /// 0019464 // glycine decarboxylation via glycine cleavage system // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005960 // glycine cleavage complex // inferred by curator /// 0005960 // glycine cleavage complex // inferred from electronic annotation 0004047 // aminomethyltransferase activity // inferred from mutant phenotype 1367909_at NM_134387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134387.1 /DB_XREF=gi:19705500 /GEN=glb /FEA=FLmRNA /CNT=17 /TID=Rn.19540.1 /TIER=FL+Stack /STK=13 /UG=Rn.19540 /DEF=Rattus norvegicus diacetylL-xylulose reductase (glb), mRNA. /PROD=diacetylL-xylulose reductase /FL=gb:AB061719.1 gb:NM_134387.1 NM_134387 dicarbonyl L-xylulose reductase Dcxr 171408 NM_134387 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005997 // xylulose metabolic process // not recorded /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006739 // NADP metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0042732 // D-xylose metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005902 // microvillus // not recorded /// 0005903 // brush border // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016614 // oxidoreductase activity, acting on CH-OH group of donors // not recorded /// 0050038 // L-xylulose reductase (NADP+) activity // inferred from electronic annotation 1367910_at AB010954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB010954.1 /DB_XREF=gi:5706363 /GEN=Smad4 /FEA=FLmRNA /CNT=26 /TID=Rn.9774.1 /TIER=FL /STK=1 /UG=Rn.9774 /LL=50554 /UG_TITLE=MAD homolog 4 (Drosophila) /DEF=Rattus norvegicus Smad4 mRNA, complete cds. /FL=gb:NM_019275.1 gb:AF056002.1 gb:AB010954.1 AB010954 SMAD family member 4 Smad4 50554 NM_019275 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // not recorded /// 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007183 // SMAD protein complex assembly // inferred from electronic annotation /// 0007183 // SMAD protein complex assembly // not recorded /// 0007369 // gastrulation // not recorded /// 0007369 // gastrulation // inferred from electronic annotation /// 0007492 // endoderm development // inferred from electronic annotation /// 0007492 // endoderm development // not recorded /// 0007498 // mesoderm development // inferred from electronic annotation /// 0007498 // mesoderm development // not recorded /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from electronic annotation /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0030509 // BMP signaling pathway // not recorded /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0032525 // somite rostral/caudal axis specification // inferred from electronic annotation /// 0032525 // somite rostral/caudal axis specification // not recorded /// 0032909 // regulation of transforming growth factor-beta2 production // inferred from electronic annotation /// 0032909 // regulation of transforming growth factor-beta2 production // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042177 // negative regulation of protein catabolic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048589 // developmental growth // inferred from electronic annotation /// 0048589 // developmental growth // not recorded /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0048729 // tissue morphogenesis // inferred from electronic annotation /// 0048729 // tissue morphogenesis // not recorded /// 0048859 // formation of anatomical boundary // inferred from electronic annotation /// 0048859 // formation of anatomical boundary // not recorded /// 0051098 // regulation of binding // inferred from electronic annotation /// 0051098 // regulation of binding // not recorded /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded /// 0060391 // positive regulation of SMAD protein nuclear translocation // inferred from electronic annotation /// 0060391 // positive regulation of SMAD protein nuclear translocation // not recorded /// 0060395 // SMAD protein signal transduction // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // not recorded /// 0060548 // negative regulation of cell death // inferred from electronic annotation /// 0060548 // negative regulation of cell death // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0032444 // activin responsive factor complex // inferred from electronic annotation /// 0032444 // activin responsive factor complex // not recorded /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005518 // collagen binding // inferred from electronic annotation /// 0005518 // collagen binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0030616 // transforming growth factor beta receptor, common-partner cytoplasmic mediator activity // inferred from electronic annotation /// 0030616 // transforming growth factor beta receptor, common-partner cytoplasmic mediator activity // not recorded /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046332 // SMAD binding // inferred from physical interaction /// 0070411 // I-SMAD binding // inferred from electronic annotation /// 0070411 // I-SMAD binding // not recorded /// 0070412 // R-SMAD binding // inferred from electronic annotation /// 0070412 // R-SMAD binding // not recorded 1367911_at NM_053638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053638.1 /DB_XREF=gi:16758445 /GEN=Idh3a /FEA=FLmRNA /CNT=25 /TID=Rn.2633.1 /TIER=FL+Stack /STK=13 /UG=Rn.2633 /LL=114096 /DEF=Rattus norvegicus isocitrate dehydrogenase 3 (NAD+) alpha (Idh3a), mRNA. /PROD=isocitrate dehydrogenase 3 (NAD+) alpha /FL=gb:AB047541.1 gb:NM_053638.1 NM_053638 isocitrate dehydrogenase 3 (NAD+) alpha Idh3a 114096 NM_053638 0006099 // tricarboxylic acid cycle // inferred from direct assay /// 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006102 // isocitrate metabolic process // inferred from direct assay /// 0006103 // 2-oxoglutarate metabolic process // inferred from direct assay /// 0006734 // NADH metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005962 // mitochondrial isocitrate dehydrogenase complex (NAD+) // inferred by curator 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004449 // isocitrate dehydrogenase (NAD+) activity // inferred from direct assay /// 0004449 // isocitrate dehydrogenase (NAD+) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation 1367912_at NM_021587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021587.1 /DB_XREF=gi:11024663 /GEN=Ltbp1 /FEA=FLmRNA /CNT=23 /TID=Rn.40942.1 /TIER=FL+Stack /STK=13 /UG=Rn.40942 /LL=59107 /DEF=Rattus norvegicus transforming growth factor-beta (TGF-beta) masking protein large subunit (Ltbp1), mRNA. /PROD=transforming growth factor-beta (TGF-beta)masking protein large subunit /FL=gb:NM_021587.1 gb:M55431.1 NM_021587 latent transforming growth factor beta binding protein 1 Ltbp1 59107 NM_021587 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0031012 // extracellular matrix // not recorded 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation 1367913_at NM_130744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130744.1 /DB_XREF=gi:18543350 /GEN=Staap /FEA=FLmRNA /CNT=18 /TID=Rn.3092.1 /TIER=FL+Stack /STK=13 /UG=Rn.3092 /DEF=Rattus norvegicus stellate cell activation associated protein (Staap), mRNA. /PROD=stellate cell activation associated protein /FL=gb:NM_130744.1 NM_130744 cytoglobin Cygb 170520 NM_130744 0006810 // transport // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from direct assay /// 0015671 // oxygen transport // inferred from electronic annotation 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded 0004601 // peroxidase activity // inferred from direct assay /// 0005344 // oxygen transporter activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0019825 // oxygen binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367914_at NM_030847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030847.1 /DB_XREF=gi:13540655 /GEN=Emp3 /FEA=FLmRNA /CNT=18 /TID=Rn.6782.1 /TIER=FL+Stack /STK=13 /UG=Rn.6782 /LL=81505 /DEF=Rattus norvegicus epithelial membrane protein 3 (Emp3), mRNA. /PROD=epithelial membrane protein 3 /FL=gb:NM_030847.1 NM_030847 epithelial membrane protein 3 Emp3 81505 NM_030847 0016049 // cell growth // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1367915_at NM_053437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053437.1 /DB_XREF=gi:17865334 /GEN=Dgat /FEA=FLmRNA /CNT=17 /TID=Rn.252.1 /TIER=FL+Stack /STK=13 /UG=Rn.252 /LL=84497 /DEF=Rattus norvegicus diacylglycerol acyltransferase (Dgat), mRNA. /PROD=diacylglycerol acyltransferase /FL=gb:AF296131.1 gb:NM_053437.1 NM_053437 diacylglycerol O-acyltransferase homolog 1 (mouse) Dgat1 84497 NM_053437 0008152 // metabolic process // not recorded /// 0019432 // triglyceride biosynthetic process // inferred from direct assay /// 0019432 // triglyceride biosynthetic process // not recorded /// 0019432 // triglyceride biosynthetic process // inferred from electronic annotation /// 0030073 // insulin secretion // inferred from mutant phenotype /// 0034379 // very-low-density lipoprotein particle assembly // inferred from electronic annotation /// 0034379 // very-low-density lipoprotein particle assembly // not recorded /// 0046486 // glycerolipid metabolic process // inferred from direct assay 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003846 // 2-acylglycerol O-acyltransferase activity // inferred from electronic annotation /// 0003846 // 2-acylglycerol O-acyltransferase activity // not recorded /// 0004144 // diacylglycerol O-acyltransferase activity // inferred from direct assay /// 0004144 // diacylglycerol O-acyltransferase activity // not recorded /// 0004144 // diacylglycerol O-acyltransferase activity // inferred from electronic annotation /// 0005504 // fatty acid binding // inferred from direct assay /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019992 // diacylglycerol binding // inferred from direct assay 1367916_at NM_017035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017035.1 /DB_XREF=gi:8393980 /GEN=Plcd1 /FEA=FLmRNA /CNT=15 /TID=Rn.12324.1 /TIER=FL+Stack /STK=13 /UG=Rn.12324 /LL=24655 /DEF=Rattus norvegicus Phospholipase C-delta1 (Plcd1), mRNA. /PROD=phospholipase C-delta1 /FL=gb:NM_017035.1 NM_017035 phospholipase C, delta 1 Plcd1 24655 NM_017035 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0010044 // response to aluminum ion // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010701 // positive regulation of norepinephrine secretion // inferred from mutant phenotype /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0032962 // positive regulation of inositol trisphosphate biosynthetic process // inferred from mutant phenotype /// 0034696 // response to prostaglandin F stimulus // inferred from expression pattern /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from mutant phenotype /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // inferred from mutant phenotype /// 0051592 // response to calcium ion // inferred from mutant phenotype /// 0055093 // response to hyperoxia // inferred from expression pattern /// 0060716 // labyrinthine layer blood vessel development // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0004435 // phosphoinositide phospholipase C activity // inferred from direct assay /// 0004435 // phosphoinositide phospholipase C activity // inferred from electronic annotation /// 0004629 // phospholipase C activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from direct assay /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from direct assay /// 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0032794 // GTPase activating protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1367917_at NM_012730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012730.1 /DB_XREF=gi:6978746 /GEN=Cyp2d2 /FEA=FLmRNA /CNT=15 /TID=Rn.40137.1 /TIER=FL+Stack /STK=13 /UG=Rn.40137 /LL=25053 /DEF=Rattus norvegicus Cytochrome P450, subfamily IID2 (Cyp2d2), mRNA. /PROD=cytochrome P450, subfamily IID2 /FL=gb:M16655.1 gb:NM_012730.1 gb:M22330.1 gb:AB008423.1 NM_012730 cytochrome P450, family 2, subfamily d, polypeptide 2 Cyp2d2 25053 NM_012730 0007565 // female pregnancy // inferred from expression pattern /// 0042493 // response to drug // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from direct assay /// 0004497 // monooxygenase activity // traceable author statement /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1367918_at NM_031066 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031066.1 /DB_XREF=gi:13994120 /GEN=Fez1 /FEA=FLmRNA /CNT=18 /TID=Rn.5468.1 /TIER=FL+Stack /STK=13 /UG=Rn.5468 /LL=81730 /DEF=Rattus norvegicus protein kinase C-binding protein Zeta1 (Fez1), mRNA. /PROD=protein kinase C-binding protein Zeta1 /FL=gb:U48249.2 gb:NM_031066.1 gb:U63740.1 NM_031066 fasciculation and elongation protein zeta 1 (zygin I) Fez1 81730 NM_031066 0006810 // transport // inferred from electronic annotation /// 0007411 // axon guidance // traceable author statement /// 0010976 // positive regulation of neuron projection development // inferred from mutant phenotype /// 0045666 // positive regulation of neuron differentiation // inferred from direct assay /// 0051654 // establishment of mitochondrion localization // inferred from mutant phenotype /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0042995 // cell projection // inferred from direct assay 0005080 // protein kinase C binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0043015 // gamma-tubulin binding // inferred from electronic annotation /// 0043015 // gamma-tubulin binding // not recorded /// 0047485 // protein N-terminus binding // inferred from physical interaction 1367919_at NM_053322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053322.1 /DB_XREF=gi:16758019 /GEN=Pom210 /FEA=FLmRNA /CNT=17 /TID=Rn.3189.1 /TIER=FL+Stack /STK=13 /UG=Rn.3189 /LL=58958 /DEF=Rattus norvegicus nuclear pore membrane glycoprotein 210 (Pom210), mRNA. /PROD=nuclear pore membrane glycoprotein 210 /FL=gb:NM_053322.1 NM_053322 nucleoporin 210 Nup210 58958 NM_053322 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005643 // nuclear pore // traceable author statement /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017056 // structural constituent of nuclear pore // non-traceable author statement /// 0046983 // protein dimerization activity // inferred from direct assay 1367920_at AB016931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB016931.1 /DB_XREF=gi:3445557 /GEN=AGR16 /FEA=FLmRNA /CNT=17 /TID=Rn.2491.1 /TIER=FL /STK=1 /UG=Rn.2491 /LL=29415 /DEF=Rattus norvegicus mRNA for AGR16, complete cds. /PROD=AGR16 /FL=gb:AB016931.1 gb:U10699.1 gb:NM_017192.1 AB016931 sphingosine-1-phosphate receptor 2 S1pr2 29415 NM_017192 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007610 // behavior // inferred from electronic annotation /// 0007610 // behavior // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001619 // lysosphingolipid and lysophosphatidic acid receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from direct assay /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1367921_at NM_022606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022606.1 /DB_XREF=gi:12018277 /GEN=AF095927 /FEA=FLmRNA /CNT=15 /TID=Rn.6446.1 /TIER=FL+Stack /STK=13 /UG=Rn.6446 /LL=64538 /DEF=Rattus norvegicus protein phosphatase 2C (AF095927), mRNA. /PROD=protein phosphatase 2C /FL=gb:NM_022606.1 gb:AF095927.1 NM_022606 integrin-linked kinase-associated serine/threonine phosphatase 2C Ilkap 64538 NM_022606 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007090 // regulation of S phase of mitotic cell cycle // inferred from mutant phenotype /// 0045786 // negative regulation of cell cycle // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from direct assay /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367922_at NM_020306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020306.1 /DB_XREF=gi:9945329 /GEN=Adam17 /FEA=FLmRNA /CNT=14 /TID=Rn.24102.1 /TIER=FL+Stack /STK=13 /UG=Rn.24102 /LL=57027 /DEF=Rattus norvegicus a disintegrin and metalloproteinase domain 17 (Adam17), mRNA. /PROD=a disintegrin and metalloprotease domain 17 /FL=gb:NM_020306.1 NM_020306 ADAM metallopeptidase domain 17 Adam17 57027 NM_020306 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0002467 // germinal center formation // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // traceable author statement /// 0006509 // membrane protein ectodomain proteolysis // inferred from mutant phenotype /// 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0006509 // membrane protein ectodomain proteolysis // traceable author statement /// 0006509 // membrane protein ectodomain proteolysis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from direct assay /// 0007155 // cell adhesion // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // not recorded /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0010820 // positive regulation of T cell chemotaxis // inferred from electronic annotation /// 0010820 // positive regulation of T cell chemotaxis // not recorded /// 0030183 // B cell differentiation // not recorded /// 0030307 // positive regulation of cell growth // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0031293 // membrane protein intracellular domain proteolysis // not recorded /// 0031659 // positive regulation of cyclin-dependent protein kinase activity involved in G1/S // inferred from electronic annotation /// 0031659 // positive regulation of cyclin-dependent protein kinase activity involved in G1/S // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0032717 // negative regulation of interleukin-8 production // inferred from electronic annotation /// 0032717 // negative regulation of interleukin-8 production // not recorded /// 0032722 // positive regulation of chemokine production // inferred from electronic annotation /// 0032722 // positive regulation of chemokine production // not recorded /// 0033025 // regulation of mast cell apoptosis // not recorded /// 0033077 // T cell differentiation in thymus // not recorded /// 0033627 // cell adhesion mediated by integrin // inferred from electronic annotation /// 0033627 // cell adhesion mediated by integrin // not recorded /// 0035313 // wound healing, spreading of epidermal cells // inferred from electronic annotation /// 0035313 // wound healing, spreading of epidermal cells // not recorded /// 0042493 // response to drug // not recorded /// 0045741 // positive regulation of epidermal growth factor receptor activity // inferred from electronic annotation /// 0045741 // positive regulation of epidermal growth factor receptor activity // not recorded /// 0048536 // spleen development // not recorded /// 0048870 // cell motility // not recorded /// 0051088 // PMA-inducible membrane protein ectodomain proteolysis // inferred from electronic annotation /// 0051088 // PMA-inducible membrane protein ectodomain proteolysis // not recorded /// 0051272 // positive regulation of cellular component movement // not recorded /// 0055099 // response to high density lipoprotein stimulus // inferred from electronic annotation /// 0055099 // response to high density lipoprotein stimulus // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0032587 // ruffle membrane // not recorded /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from mutant phenotype /// 0004222 // metalloendopeptidase activity // not recorded /// 0005138 // interleukin-6 receptor binding // inferred from electronic annotation /// 0005138 // interleukin-6 receptor binding // not recorded /// 0005178 // integrin binding // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // not recorded /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded /// 0030165 // PDZ domain binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1367923_at NM_134389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134389.1 /DB_XREF=gi:19705502 /GEN=GR-LACS /FEA=FLmRNA /CNT=17 /TID=Rn.17672.1 /TIER=FL+Stack /STK=13 /UG=Rn.17672 /LL=171410 /DEF=Rattus norvegicus gonadotropin-regulated long chain acyl-CoA synthetase (GR-LACS), mRNA. /PROD=gonadotropin-regulated long chain acyl-CoAsynthetase /FL=gb:NM_134389.1 gb:AF208125.1 NM_134389 acyl-CoA synthetase bubblegum family member 1 Acsbg1 171410 NM_134389 0000038 // very long-chain fatty acid metabolic process // not recorded /// 0000038 // very long-chain fatty acid metabolic process // inferred from sequence or structural similarity /// 0000038 // very long-chain fatty acid metabolic process // inferred from electronic annotation /// 0001552 // ovarian follicle atresia // inferred from expression pattern /// 0001676 // long-chain fatty acid metabolic process // inferred from mutant phenotype /// 0001676 // long-chain fatty acid metabolic process // not recorded /// 0001676 // long-chain fatty acid metabolic process // inferred from sequence or structural similarity /// 0001676 // long-chain fatty acid metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005777 // peroxisome // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from mutant phenotype /// 0004467 // long-chain fatty acid-CoA ligase activity // not recorded /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from sequence or structural similarity /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0031957 // very long-chain fatty acid-CoA ligase activity // not recorded /// 0031957 // very long-chain fatty acid-CoA ligase activity // inferred from sequence or structural similarity /// 0031957 // very long-chain fatty acid-CoA ligase activity // inferred from electronic annotation 1367924_at NM_134406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134406.1 /DB_XREF=gi:19705534 /GEN=Pacs1 /FEA=FLmRNA /CNT=14 /TID=Rn.17883.1 /TIER=FL+Stack /STK=13 /UG=Rn.17883 /LL=171444 /DEF=Rattus norvegicus cytosolic sorting protein PACS-1 (Pacs1), mRNA. /PROD=cytosolic sorting protein PACS-1 /FL=gb:NM_134406.1 gb:AF076183.1 NM_134406 phosphofurin acidic cluster sorting protein 1 Pacs1 171444 NM_134406 0000042 // protein targeting to Golgi // inferred from electronic annotation /// 0000042 // protein targeting to Golgi // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0030137 // COPI-coated vesicle // inferred from electronic annotation /// 0030137 // COPI-coated vesicle // not recorded 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1367925_at NM_022715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022715.1 /DB_XREF=gi:12083688 /GEN=Mvp /FEA=FLmRNA /CNT=14 /TID=Rn.10028.1 /TIER=FL+Stack /STK=13 /UG=Rn.10028 /LL=64681 /DEF=Rattus norvegicus major vault protein (Mvp), mRNA. /PROD=major vault protein /FL=gb:NM_022715.1 gb:U09870.1 NM_022715 major vault protein Mvp 64681 NM_022715 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 1367926_at NM_031851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031851.1 /DB_XREF=gi:13937352 /GEN=Phb /FEA=FLmRNA /CNT=58 /TID=Rn.29754.1 /TIER=FL+Stack /STK=12 /UG=Rn.29754 /LL=25344 /DEF=Rattus norvegicus Prohibitin (Phb), mRNA. /PROD=prohibitin /FL=gb:M61219.1 gb:NM_031851.1 NM_031851 prohibitin Phb 25344 NM_031851 0001541 // ovarian follicle development // inferred from expression pattern /// 0001552 // ovarian follicle atresia // inferred from expression pattern /// 0006260 // DNA replication // inferred from electronic annotation /// 0006950 // response to stress // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0016481 // negative regulation of transcription // not recorded /// 0016575 // histone deacetylation // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // not recorded /// 0045471 // response to ethanol // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030061 // mitochondrial crista // inferred from direct assay /// 0031315 // extrinsic to mitochondrial outer membrane // inferred from direct assay 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // not recorded 1367927_at BI282863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282863 /DB_XREF=gi:14934049 /DB_XREF=UI-R-CW0s-ccc-c-07-0-UI.s1 /CLONE=UI-R-CW0s-ccc-c-07-0-UI /FEA=FLmRNA /CNT=58 /TID=Rn.29754.1 /TIER=Stack /STK=32 /UG=Rn.29754 /LL=25344 /UG_GENE=Phb /UG_TITLE=Prohibitin /FL=gb:M61219.1 gb:NM_031851.1 BI282863 prohibitin Phb 25344 NM_031851 0001541 // ovarian follicle development // inferred from expression pattern /// 0001552 // ovarian follicle atresia // inferred from expression pattern /// 0006260 // DNA replication // inferred from electronic annotation /// 0006950 // response to stress // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0016481 // negative regulation of transcription // not recorded /// 0016575 // histone deacetylation // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // not recorded /// 0045471 // response to ethanol // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030061 // mitochondrial crista // inferred from direct assay /// 0031315 // extrinsic to mitochondrial outer membrane // inferred from direct assay 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // not recorded 1367928_at BF395647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395647 /DB_XREF=gi:11380617 /DB_XREF=UI-R-CM0-bjp-e-07-0-UI.s1 /CLONE=UI-R-CM0-bjp-e-07-0-UI /FEA=FLmRNA /CNT=62 /TID=Rn.48663.1 /TIER=Stack /STK=13 /UG=Rn.48663 /LL=29557 /UG_GENE=Myh7 /UG_TITLE=myosin heavy chain, cardiac muscle, fetal /FL=gb:NM_017240.1 BF395647 myosin, heavy chain 7, cardiac muscle, beta Myh7 29557 NM_017240 0000302 // response to reactive oxygen species // inferred from expression pattern /// 0002027 // regulation of heart rate // inferred from electronic annotation /// 0002027 // regulation of heart rate // not recorded /// 0006200 // ATP catabolic process // inferred from mutant phenotype /// 0006200 // ATP catabolic process // not recorded /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006936 // muscle contraction // inferred from mutant phenotype /// 0006936 // muscle contraction // not recorded /// 0007512 // adult heart development // inferred from electronic annotation /// 0007512 // adult heart development // not recorded /// 0030049 // muscle filament sliding // inferred from electronic annotation /// 0030049 // muscle filament sliding // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005859 // muscle myosin complex // inferred from direct assay /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0016459 // myosin complex // not recorded /// 0016459 // myosin complex // inferred from electronic annotation /// 0030016 // myofibril // inferred from electronic annotation /// 0030016 // myofibril // not recorded /// 0032982 // myosin filament // inferred from electronic annotation /// 0043292 // contractile fiber // inferred from mutant phenotype 0000146 // microfilament motor activity // inferred from mutant phenotype /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from electronic annotation /// 0008307 // structural constituent of muscle // inferred from electronic annotation /// 0008307 // structural constituent of muscle // not recorded /// 0016887 // ATPase activity // inferred from mutant phenotype /// 0016887 // ATPase activity // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0030898 // actin-dependent ATPase activity // inferred from electronic annotation /// 0030898 // actin-dependent ATPase activity // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay 1367929_at NM_012925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012925.1 /DB_XREF=gi:6978634 /GEN=Cd59 /FEA=FLmRNA /CNT=55 /TID=Rn.1231.1 /TIER=FL+Stack /STK=12 /UG=Rn.1231 /LL=25407 /DEF=Rattus norvegicus CD59 antigen (Cd59), mRNA. /PROD=CD59 antigen /FL=gb:NM_012925.1 gb:U48255.1 NM_012925 CD59 molecule, complement regulatory protein Cd59 25407 NM_012925 0001971 // negative regulation of activation of membrane attack complex // inferred from direct assay /// 0001971 // negative regulation of activation of membrane attack complex // not recorded /// 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0030449 // regulation of complement activation // non-traceable author statement /// 0042102 // positive regulation of T cell proliferation // inferred from mutant phenotype /// 0045916 // negative regulation of complement activation // not recorded /// 0045918 // negative regulation of cytolysis // not recorded 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0031362 // anchored to external side of plasma membrane // not recorded /// 0042383 // sarcolemma // inferred from direct assay /// 0043218 // compact myelin // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded 1367930_at NM_017195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017195.1 /DB_XREF=gi:8393414 /GEN=Basp2 /FEA=FLmRNA /CNT=33 /TID=Rn.10928.1 /TIER=FL+Stack /STK=12 /UG=Rn.10928 /LL=29423 /DEF=Rattus norvegicus brain abundant, membrane attached signal protein 2 (Basp2), mRNA. /PROD=brain abundant, membrane attached signal protein2 /FL=gb:NM_017195.1 gb:M16736.1 gb:M16228.1 NM_017195 growth associated protein 43 Gap43 29423 NM_017195 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from expression pattern /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0010001 // glial cell differentiation // inferred from electronic annotation /// 0010001 // glial cell differentiation // not recorded /// 0016198 // axon choice point recognition // inferred from electronic annotation /// 0016198 // axon choice point recognition // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0040008 // regulation of growth // inferred from electronic annotation /// 0042246 // tissue regeneration // inferred from expression pattern /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045165 // cell fate commitment // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0030426 // growth cone // traceable author statement /// 0032584 // growth cone membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation 1367931_a_at X60790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X60790.1 /DB_XREF=gi:57003 /GEN=PYBP2 /FEA=mRNA /CNT=2 /TID=Rn.64440.2 /TIER=ConsEnd /STK=0 /UG=Rn.64440 /LL=29497 /DEF=Rat PYBP2 mRNA for pyrimidine binding protein 2. /PROD=pyrimidine binding protein 2 X60790 polypyrimidine tract binding protein 1 Ptbp1 29497 NM_022516 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0008380 // RNA splicing // traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0004519 // endonuclease activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367932_at NM_017268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017268.1 /DB_XREF=gi:8393537 /GEN=Hmgcs1 /FEA=FLmRNA /CNT=39 /TID=Rn.5106.1 /TIER=FL+Stack /STK=12 /UG=Rn.5106 /LL=29637 /DEF=Rattus norvegicus 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (Hmgcs1), mRNA. /PROD=3-hydroxy-3-methylglutaryl-Coenzyme A synthase1 /FL=gb:NM_017268.1 NM_017268 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble) Hmgcs1 29637 NM_017268 0001101 // response to acid // inferred from expression pattern /// 0001889 // liver development // inferred from expression pattern /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation /// 0008584 // male gonad development // inferred from expression pattern /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0009645 // response to low light intensity stimulus // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014074 // response to purine // inferred from expression pattern /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0033197 // response to vitamin E // inferred from expression pattern /// 0034698 // response to gonadotropin stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0046690 // response to tellurium ion // inferred from expression pattern /// 0055094 // response to lipoprotein stimulus // inferred from expression pattern /// 0070723 // response to cholesterol // inferred from expression pattern /// 0071372 // cellular response to follicle-stimulating hormone stimulus // inferred from expression pattern /// 0071397 // cellular response to cholesterol // inferred from expression pattern /// 0071407 // cellular response to organic cyclic substance // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004421 // hydroxymethylglutaryl-CoA synthase activity // inferred from direct assay /// 0004421 // hydroxymethylglutaryl-CoA synthase activity // inferred from mutant phenotype /// 0004421 // hydroxymethylglutaryl-CoA synthase activity // not recorded /// 0004421 // hydroxymethylglutaryl-CoA synthase activity // traceable author statement /// 0004421 // hydroxymethylglutaryl-CoA synthase activity // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043177 // organic acid binding // inferred from direct assay 1367933_at NM_031011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031011.2 /DB_XREF=gi:19923690 /GEN=Amd1 /FEA=FLmRNA /CNT=40 /TID=Rn.29949.1 /TIER=FL+Stack /STK=12 /UG=Rn.29949 /LL=81640 /DEF=Rattus norvegicus S-Adenosylmethionine decarboxylase 1 (Amd1), mRNA. /PROD=S-adenosylmethionine decarboxylase /FL=gb:M34464.1 gb:NM_031011.2 NM_031011 adenosylmethionine decarboxylase 1 Amd1 81640 NM_031011 0001701 // in utero embryonic development // not recorded /// 0006595 // polyamine metabolic process // inferred from direct assay /// 0006596 // polyamine biosynthetic process // inferred from electronic annotation /// 0006597 // spermine biosynthetic process // inferred from direct assay /// 0006597 // spermine biosynthetic process // inferred from electronic annotation /// 0006597 // spermine biosynthetic process // not recorded /// 0008295 // spermidine biosynthetic process // inferred from direct assay /// 0008295 // spermidine biosynthetic process // inferred from electronic annotation /// 0008295 // spermidine biosynthetic process // not recorded 0005829 // cytosol // not recorded 0004014 // adenosylmethionine decarboxylase activity // inferred from direct assay /// 0004014 // adenosylmethionine decarboxylase activity // inferred from electronic annotation /// 0004014 // adenosylmethionine decarboxylase activity // not recorded /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation 1367934_at NM_012875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012875.1 /DB_XREF=gi:6981483 /GEN=Rpl39 /FEA=FLmRNA /CNT=20 /TID=Rn.6172.1 /TIER=FL+Stack /STK=12 /UG=Rn.6172 /LL=25347 /DEF=Rattus norvegicus Ribosomal protein L39 (Rpl39), mRNA. /PROD=ribosomal protein L39 /FL=gb:NM_012875.1 NM_012875 ribosomal protein L39 Rpl39 25347 NM_012875 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1367935_at NM_057195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057195.1 /DB_XREF=gi:17105375 /GEN=Smu-1 /FEA=FLmRNA /CNT=24 /TID=Rn.54978.1 /TIER=FL+Stack /STK=12 /UG=Rn.54978 /LL=117541 /DEF=Rattus norvegicus homolog of C. elegans smu-1 (Smu-1), mRNA. /PROD=homolog of C. elegans smu-1 /FL=gb:NM_057195.1 gb:AY029526.1 NM_057195 smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) Smu1 117541 NM_057195 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 1367936_at NM_019206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019206.1 /DB_XREF=gi:9507150 /GEN=Stk10 /FEA=FLmRNA /CNT=22 /TID=Rn.4190.1 /TIER=FL+Stack /STK=12 /UG=Rn.4190 /LL=29398 /DEF=Rattus norvegicus Serinethreonine kinase 10 (Stk10), mRNA. /PROD=serinethreonine kinase 10 /FL=gb:U33472.1 gb:NM_019206.1 NM_019206 serine/threonine kinase 10 Stk10 29398 NM_019206 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1367937_at AF230096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF230096.1 /DB_XREF=gi:12656150 /FEA=FLmRNA /CNT=18 /TID=Rn.19959.1 /TIER=FL+Stack /STK=12 /UG=Rn.19959 /LL=56728 /UG_GENE=LOC56728 /DEF=Rattus norvegicus kidney-specific protein 32 mRNA, complete cds. /PROD=kidney-specific protein 32 /FL=gb:NM_019908.1 gb:AF230096.1 AF230096 myo-inositol oxygenase Miox 252899 NM_145771 0008152 // metabolic process // not recorded /// 0019310 // inositol catabolic process // inferred from sequence or structural similarity /// 0019310 // inositol catabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016234 // inclusion body // inferred from sequence or structural similarity 0004033 // aldo-keto reductase activity // not recorded /// 0004033 // aldo-keto reductase activity // inferred from sequence or structural similarity /// 0004033 // aldo-keto reductase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016651 // oxidoreductase activity, acting on NADH or NADPH // inferred from electronic annotation /// 0016651 // oxidoreductase activity, acting on NADH or NADPH // not recorded /// 0016701 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050113 // inositol oxygenase activity // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from direct assay 1367938_at NM_031325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031325.1 /DB_XREF=gi:13786145 /GEN=Ugdh /FEA=FLmRNA /CNT=33 /TID=Rn.3967.1 /TIER=FL+Stack /STK=12 /UG=Rn.3967 /LL=83472 /DEF=Rattus norvegicus UDP-glucose dehydrogeanse (Ugdh), mRNA. /PROD=UDP-glucose dehydrogeanse /FL=gb:NM_031325.1 gb:AB013732.1 NM_031325 UDP-glucose dehydrogenase Ugdh 83472 NM_031325 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // not recorded /// 0006065 // UDP-glucuronate biosynthetic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0003979 // UDP-glucose 6-dehydrogenase activity // inferred from direct assay /// 0003979 // UDP-glucose 6-dehydrogenase activity // not recorded /// 0003979 // UDP-glucose 6-dehydrogenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation 1367939_at NM_012733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012733.1 /DB_XREF=gi:6981463 /GEN=Rbp1 /FEA=FLmRNA /CNT=20 /TID=Rn.902.1 /TIER=FL+Stack /STK=12 /UG=Rn.902 /LL=25056 /DEF=Rattus norvegicus Retinol-binding protein 1 (Rbp1), mRNA. /PROD=retinol-binding protein 1 /FL=gb:NM_012733.1 NM_012733 retinol binding protein 1, cellular Rbp1 25056 NM_012733 0006810 // transport // inferred from electronic annotation /// 0030852 // regulation of granulocyte differentiation // inferred from electronic annotation /// 0030852 // regulation of granulocyte differentiation // not recorded /// 0033189 // response to vitamin A // inferred from electronic annotation /// 0033189 // response to vitamin A // not recorded /// 0042572 // retinol metabolic process // inferred from electronic annotation /// 0042572 // retinol metabolic process // not recorded /// 0042573 // retinoic acid metabolic process // inferred from electronic annotation /// 0042573 // retinoic acid metabolic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0016918 // retinal binding // inferred from electronic annotation /// 0019841 // retinol binding // inferred from electronic annotation 1367940_at NM_053352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053352.1 /DB_XREF=gi:16758073 /GEN=Rdc1 /FEA=FLmRNA /CNT=19 /TID=Rn.12959.1 /TIER=FL+Stack /STK=12 /UG=Rn.12959 /LL=84348 /DEF=Rattus norvegicus chemokine orphan receptor 1 (Rdc1), mRNA. /PROD=chemokine orphan receptor 1 /FL=gb:AF118816.1 gb:NM_053352.1 NM_053352 chemokine (C-X-C motif) receptor 7 Cxcr7 84348 NM_053352 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367941_at NM_031326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031326.1 /DB_XREF=gi:13786147 /GEN=Tfam /FEA=FLmRNA /CNT=19 /TID=Rn.18266.1 /TIER=FL+Stack /STK=12 /UG=Rn.18266 /LL=83474 /DEF=Rattus norvegicus transcription factor A, mitochondrial (Tfam), mRNA. /PROD=transcription factor A, mitochondrial /FL=gb:NM_031326.1 gb:AF377866.1 gb:AB014089.1 NM_031326 transcription factor A, mitochondrial Tfam 83474 NM_031326 0006264 // mitochondrial DNA replication // traceable author statement /// 0006350 // transcription // inferred from electronic annotation /// 0006390 // transcription from mitochondrial promoter // inferred from mutant phenotype /// 0006390 // transcription from mitochondrial promoter // traceable author statement /// 0033108 // mitochondrial respiratory chain complex assembly // inferred from electronic annotation /// 0033108 // mitochondrial respiratory chain complex assembly // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367942_at NM_019144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019144.1 /DB_XREF=gi:9506368 /GEN=Acp5 /FEA=FLmRNA /CNT=16 /TID=Rn.3494.1 /TIER=FL+Stack /STK=12 /UG=Rn.3494 /LL=25732 /DEF=Rattus norvegicus Acid phosphatase 5, tartrate resistant (Acp5), mRNA. /PROD=acid phosphatase 5, tartrate resistant /FL=gb:NM_019144.1 NM_019144 acid phosphatase 5, tartrate resistant Acp5 25732 NM_019144 0001503 // ossification // inferred from expression pattern /// 0007162 // negative regulation of cell adhesion // inferred from direct assay /// 0010043 // response to zinc ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016311 // dephosphorylation // not recorded /// 0030316 // osteoclast differentiation // inferred from expression pattern /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // not recorded /// 0032691 // negative regulation of interleukin-1 beta production // not recorded /// 0032695 // negative regulation of interleukin-12 production // not recorded /// 0032720 // negative regulation of tumor necrosis factor production // not recorded /// 0032929 // negative regulation of superoxide anion generation // not recorded /// 0033555 // multicellular organismal response to stress // inferred from expression pattern /// 0033591 // response to L-ascorbic acid // inferred from expression pattern /// 0034097 // response to cytokine stimulus // not recorded /// 0045019 // negative regulation of nitric oxide biosynthetic process // not recorded /// 0045453 // bone resorption // inferred from expression pattern /// 0045453 // bone resorption // not recorded /// 0045453 // bone resorption // traceable author statement /// 0050728 // negative regulation of inflammatory response // not recorded /// 0050830 // defense response to Gram-positive bacterium // not recorded /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0060349 // bone morphogenesis // not recorded /// 0070723 // response to cholesterol // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // traceable author statement /// 0005764 // lysosome // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016021 // integral to membrane // traceable author statement 0003993 // acid phosphatase activity // inferred from direct assay /// 0003993 // acid phosphatase activity // not recorded /// 0003993 // acid phosphatase activity // traceable author statement /// 0003993 // acid phosphatase activity // inferred from electronic annotation /// 0008198 // ferrous iron binding // not recorded /// 0008198 // ferrous iron binding // inferred from sequence or structural similarity /// 0008199 // ferric iron binding // not recorded /// 0008199 // ferric iron binding // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367943_at NM_030867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030867.1 /DB_XREF=gi:13540694 /GEN=Nfkbib /FEA=FLmRNA /CNT=17 /TID=Rn.8395.1 /TIER=FL+Stack /STK=12 /UG=Rn.8395 /LL=81525 /DEF=Rattus norvegicus I-kappa-B-beta (Nfkbib), mRNA. /PROD=I-kappa-B-beta /FL=gb:AF246634.1 gb:NM_030867.1 NM_030867 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta Nfkbib 81525 NM_030867 0007165 // signal transduction // inferred from direct assay /// 0007253 // cytoplasmic sequestering of NF-kappaB // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0033256 // I-kappaB/NF-kappaB complex // inferred by curator 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051059 // NF-kappaB binding // inferred by curator 1367944_at NM_080397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080397.1 /DB_XREF=gi:17939349 /GEN=Hnk-1st /FEA=FLmRNA /CNT=16 /TID=Rn.11224.1 /TIER=FL+Stack /STK=12 /UG=Rn.11224 /LL=140568 /DEF=Rattus norvegicus HNK-1 sulfotransferase (Hnk-1st), mRNA. /PROD=HNK-1 sulfotransferase /FL=gb:AF022729.1 gb:NM_080397.1 NM_080397 carbohydrate sulfotransferase 10 Chst10 140568 NM_080397 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0007612 // learning // inferred from electronic annotation /// 0007612 // learning // not recorded /// 0007616 // long-term memory // inferred from electronic annotation /// 0007616 // long-term memory // not recorded /// 0008152 // metabolic process // not recorded /// 0016051 // carbohydrate biosynthetic process // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0008146 // sulfotransferase activity // not recorded /// 0016232 // HNK-1 sulfotransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation 1367945_at NM_053359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053359.1 /DB_XREF=gi:16758087 /GEN=Atox1 /FEA=FLmRNA /CNT=15 /TID=Rn.11992.1 /TIER=FL+Stack /STK=12 /UG=Rn.11992 /LL=84355 /DEF=Rattus norvegicus ATX1 (antioxidant protein 1) homolog 1 (yeast) (Atox1), mRNA. /PROD=ATX1 (antioxidant protein 1) homolog 1 (yeast) /FL=gb:AF177671.1 gb:AF127137.1 gb:NM_053359.1 NM_053359 ATX1 antioxidant protein 1 homolog (yeast) Atox1 84355 NM_053359 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // not recorded /// 0006878 // cellular copper ion homeostasis // inferred from electronic annotation /// 0006878 // cellular copper ion homeostasis // not recorded /// 0006979 // response to oxidative stress // inferred from direct assay /// 0030001 // metal ion transport // inferred from electronic annotation 0005507 // copper ion binding // inferred from mutant phenotype /// 0005507 // copper ion binding // not recorded /// 0005507 // copper ion binding // inferred from electronic annotation /// 0016531 // copper chaperone activity // inferred from electronic annotation /// 0016531 // copper chaperone activity // not recorded /// 0032767 // copper-dependent protein binding // inferred from electronic annotation /// 0032767 // copper-dependent protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1367946_at NM_017365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017365.1 /DB_XREF=gi:8393152 /GEN=Pdlim1 /FEA=FLmRNA /CNT=21 /TID=Rn.11170.1 /TIER=FL+Stack /STK=12 /UG=Rn.11170 /LL=54133 /DEF=Rattus norvegicus PDZ and LIM domain 1 (elfin) (Pdlim1), mRNA. /PROD=LIM protein /FL=gb:U23769.1 gb:NM_017365.1 NM_017365 PDZ and LIM domain 1 Pdlim1 54133 NM_017365 0001666 // response to hypoxia // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // not recorded 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367947_at U42413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U42413.1 /DB_XREF=gi:1335859 /FEA=FLmRNA /CNT=20 /TID=Rn.11089.1 /TIER=FL+Stack /STK=12 /UG=Rn.11089 /LL=25520 /UG_GENE=Prkaac /DEF=Rattus norvegicus 5-AMP-activated protein kinase, gamma-1 subunit mRNA, complete cds. /PROD=5-AMP-activated protein kinase, gamma-1subunit /FL=gb:NM_013010.1 gb:U42413.1 U42413 protein kinase, AMP-activated, gamma 1 non-catalytic subunit Prkag1 25520 NM_013010 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006950 // response to stress // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0046320 // regulation of fatty acid oxidation // not recorded /// 0050790 // regulation of catalytic activity // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0031588 // AMP-activated protein kinase complex // inferred from direct assay /// 0031588 // AMP-activated protein kinase complex // inferred from mutant phenotype /// 0043234 // protein complex // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004679 // AMP-activated protein kinase activity // inferred from direct assay /// 0004679 // AMP-activated protein kinase activity // inferred from mutant phenotype /// 0004679 // AMP-activated protein kinase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016208 // AMP binding // inferred from direct assay /// 0016208 // AMP binding // inferred from mutant phenotype /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from electronic annotation 1367948_a_at U93307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U93307.1 /DB_XREF=gi:2098760 /FEA=FLmRNA /CNT=1 /TID=Rn.32549.2 /TIER=FL /STK=1 /UG=Rn.32549 /LL=25589 /UG_GENE=Kdr /DEF=Rattus norvegicus C-terminal truncated VEGF receptor-2FLK-1 mRNA, complete cds. /PROD=C-terminal truncated VEGF receptor-2FLK-1 /FL=gb:U93307.1 U93307 kinase insert domain receptor Kdr 25589 NM_013062 0001525 // angiogenesis // inferred from electronic annotation /// 0001541 // ovarian follicle development // not recorded /// 0001570 // vasculogenesis // not recorded /// 0001666 // response to hypoxia // inferred from mutant phenotype /// 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008360 // regulation of cell shape // not recorded /// 0008584 // male gonad development // inferred from direct assay /// 0010595 // positive regulation of endothelial cell migration // not recorded /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // inferred from mutant phenotype /// 0016310 // phosphorylation // not recorded /// 0016477 // cell migration // not recorded /// 0030097 // hemopoiesis // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030335 // positive regulation of cell migration // not recorded /// 0032008 // positive regulation of TOR signaling cascade // inferred from mutant phenotype /// 0042221 // response to chemical stimulus // inferred from direct assay /// 0042493 // response to drug // inferred from mutant phenotype /// 0043129 // surfactant homeostasis // not recorded /// 0043526 // neuroprotection // inferred from mutant phenotype /// 0045165 // cell fate commitment // not recorded /// 0045446 // endothelial cell differentiation // not recorded /// 0045766 // positive regulation of angiogenesis // inferred from direct assay /// 0045909 // positive regulation of vasodilation // inferred from genetic interaction /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from mutant phenotype /// 0048010 // vascular endothelial growth factor receptor signaling pathway // not recorded /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0048170 // positive regulation of long-term neuronal synaptic plasticity // inferred from mutant phenotype /// 0048286 // lung alveolus development // not recorded /// 0048469 // cell maturation // not recorded /// 0048754 // branching morphogenesis of a tube // not recorded /// 0048812 // neuron projection morphogenesis // inferred from mutant phenotype /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0050769 // positive regulation of neurogenesis // inferred from expression pattern /// 0050850 // positive regulation of calcium-mediated signaling // inferred from mutant phenotype /// 0050927 // positive regulation of positive chemotaxis // not recorded /// 0051894 // positive regulation of focal adhesion assembly // not recorded /// 0055074 // calcium ion homeostasis // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005021 // vascular endothelial growth factor receptor activity // inferred from mutant phenotype /// 0005021 // vascular endothelial growth factor receptor activity // not recorded /// 0005021 // vascular endothelial growth factor receptor activity // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from mutant phenotype /// 0019838 // growth factor binding // inferred from physical interaction /// 0019838 // growth factor binding // not recorded /// 0019838 // growth factor binding // inferred from electronic annotation 1367949_at NM_017139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017139.1 /DB_XREF=gi:8393943 /GEN=Penk-rs /FEA=FLmRNA /CNT=15 /TID=Rn.10015.1 /TIER=FL+Stack /STK=12 /UG=Rn.10015 /LL=29237 /DEF=Rattus norvegicus preproenkephalin, related sequence (Penk-rs), mRNA. /PROD=preproenkephalin, related sequence /FL=gb:NM_017139.1 gb:M28263.1 NM_017139 proenkephalin Penk 29237 NM_017139 0001662 // behavioral fear response // inferred from electronic annotation /// 0001662 // behavioral fear response // not recorded /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007610 // behavior // inferred from electronic annotation /// 0007610 // behavior // not recorded /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0019233 // sensory perception of pain // not recorded 0005576 // extracellular region // inferred from electronic annotation 0001515 // opioid peptide activity // inferred from electronic annotation 1367950_at NM_019269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019269.1 /DB_XREF=gi:9507118 /GEN=Slc22a5 /FEA=FLmRNA /CNT=14 /TID=Rn.8844.1 /TIER=FL+Stack /STK=12 /UG=Rn.8844 /LL=29726 /DEF=Rattus norvegicus solute carrier family 22 (organic cation transporter), member 5 (Slc22a5), mRNA. /PROD=solute carrier family 22 (organic cationtransporter), member 5 /FL=gb:NM_019269.1 gb:AB017260.1 gb:AF110416.1 NM_019269 solute carrier family 22 (organic cation/carnitine transporter), member 5 Slc22a5 29726 NM_019269 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0007512 // adult heart development // not recorded /// 0007626 // locomotory behavior // not recorded /// 0009437 // carnitine metabolic process // not recorded /// 0015697 // quaternary ammonium group transport // inferred from direct assay /// 0015697 // quaternary ammonium group transport // inferred from mutant phenotype /// 0015697 // quaternary ammonium group transport // not recorded /// 0015879 // carnitine transport // inferred from direct assay /// 0015879 // carnitine transport // inferred from mutant phenotype /// 0015879 // carnitine transport // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0042891 // antibiotic transport // inferred from mutant phenotype /// 0048608 // reproductive structure development // not recorded /// 0052106 // quorum sensing involved in interaction with host // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060731 // positive regulation of intestinal epithelial structure maintenance // not recorded /// 0070715 // sodium-dependent organic cation transport // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0031526 // brush border membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0015075 // ion transmembrane transporter activity // inferred from electronic annotation /// 0015226 // carnitine transporter activity // inferred from direct assay /// 0015226 // carnitine transporter activity // inferred from mutant phenotype /// 0015226 // carnitine transporter activity // not recorded /// 0015293 // symporter activity // inferred from electronic annotation /// 0015651 // quaternary ammonium group transmembrane transporter activity // inferred from direct assay /// 0015651 // quaternary ammonium group transmembrane transporter activity // inferred from mutant phenotype /// 0015651 // quaternary ammonium group transmembrane transporter activity // not recorded /// 0030165 // PDZ domain binding // not recorded /// 0042895 // antibiotic transporter activity // inferred from mutant phenotype 1367951_at NM_017328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017328.1 /DB_XREF=gi:8393947 /GEN=Pgam2 /FEA=FLmRNA /CNT=14 /TID=Rn.9738.1 /TIER=FL+Stack /STK=12 /UG=Rn.9738 /LL=24959 /DEF=Rattus norvegicus Phosphoglycerate mutase 2 (Pgam2), mRNA. /PROD=phosphoglycerate mutase 2 /FL=gb:M31835.1 gb:NM_017328.1 NM_017328 phosphoglycerate mutase 2 (muscle) Pgam2 24959 NM_017328 0006094 // gluconeogenesis // inferred from direct assay /// 0006096 // glycolysis // inferred from electronic annotation /// 0006096 // glycolysis // not recorded /// 0006941 // striated muscle contraction // inferred from electronic annotation /// 0006941 // striated muscle contraction // not recorded /// 0007283 // spermatogenesis // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0010035 // response to inorganic substance // inferred from mutant phenotype /// 0046689 // response to mercury ion // inferred from mutant phenotype 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004082 // bisphosphoglycerate mutase activity // inferred from electronic annotation /// 0004083 // 2,3-bisphospho-D-glycerate 2-phosphohydrolase activity // inferred from electronic annotation /// 0004619 // phosphoglycerate mutase activity // inferred from direct assay /// 0004619 // phosphoglycerate mutase activity // not recorded /// 0004619 // phosphoglycerate mutase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0016868 // intramolecular transferase activity, phosphotransferases // inferred from electronic annotation /// 0046538 // 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity // inferred from mutant phenotype /// 0048037 // cofactor binding // inferred from mutant phenotype 1367952_at NM_030827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030827.1 /DB_XREF=gi:13562117 /GEN=Lrp2 /FEA=FLmRNA /CNT=21 /TID=Rn.26430.1 /TIER=FL+Stack /STK=12 /UG=Rn.26430 /LL=29216 /DEF=Rattus norvegicus glycoprotein 330 (Lrp2), mRNA. /PROD=glycoprotein 330 /FL=gb:NM_030827.1 gb:L34049.1 NM_030827 low density lipoprotein-related protein 2 Lrp2 29216 NM_030827 0006766 // vitamin metabolic process // not recorded /// 0006766 // vitamin metabolic process // traceable author statement /// 0006766 // vitamin metabolic process // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from direct assay /// 0006898 // receptor-mediated endocytosis // inferred from mutant phenotype /// 0006898 // receptor-mediated endocytosis // not recorded /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0010165 // response to X-ray // inferred from direct assay /// 0010951 // negative regulation of endopeptidase activity // inferred by curator /// 0016197 // endosome transport // inferred from mutant phenotype /// 0020028 // hemoglobin import // inferred from mutant phenotype /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0033280 // response to vitamin D // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042953 // lipoprotein transport // inferred from mutant phenotype /// 0045056 // transcytosis // inferred from mutant phenotype /// 0046879 // hormone secretion // inferred from mutant phenotype 0005615 // extracellular space // inferred from direct assay /// 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005903 // brush border // inferred from direct assay /// 0005903 // brush border // not recorded /// 0005903 // brush border // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0005905 // coated pit // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0030139 // endocytic vesicle // not recorded /// 0031526 // brush border membrane // inferred from direct assay /// 0031526 // brush border membrane // not recorded /// 0031526 // brush border membrane // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation 0004872 // receptor activity // inferred from mutant phenotype /// 0004872 // receptor activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0030492 // hemoglobin binding // inferred from direct assay /// 0042954 // lipoprotein transporter activity // inferred from mutant phenotype 1367953_at NM_017092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017092.1 /DB_XREF=gi:8394495 /GEN=Tyro3 /FEA=FLmRNA /CNT=21 /TID=Rn.8883.1 /TIER=FL+Stack /STK=12 /UG=Rn.8883 /LL=25232 /DEF=Rattus norvegicus Bruton agammaglobulinemia tyrosine kinase (Tyro3), mRNA. /PROD=bruton agammaglobulinemia tyrosine kinase /FL=gb:NM_017092.1 gb:D37880.1 NM_017092 TYRO3 protein tyrosine kinase Tyro3 25232 NM_017092 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction 1367954_at U59486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U59486.1 /DB_XREF=gi:1399862 /FEA=FLmRNA /CNT=19 /TID=Rn.6281.1 /TIER=FL /STK=1 /UG=Rn.6281 /LL=25454 /UG_GENE=Gfra1 /DEF=Rattus norvegicus GDNF receptor alpha mRNA, complete cds. /PROD=GDNF receptor alpha /FL=gb:AJ002072.1 gb:NM_012959.1 gb:U59486.1 gb:U97142.1 U59486 GDNF family receptor alpha 1 Gfra1 25454 NM_012959 0007166 // cell surface receptor linked signaling pathway // traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0046658 // anchored to plasma membrane // traceable author statement 0004872 // receptor activity // inferred from direct assay /// 0004872 // receptor activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from physical interaction 1367955_at NM_017355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017355.1 /DB_XREF=gi:8394135 /GEN=Rab4b /FEA=FLmRNA /CNT=19 /TID=Rn.7181.1 /TIER=FL+Stack /STK=12 /UG=Rn.7181 /LL=50866 /DEF=Rattus norvegicus ras-related GTP-binding protein 4b (Rab4b), mRNA. /PROD=ras-related GTP-binding protein 4b /FL=gb:NM_017355.1 NM_017355 RAB4B, member RAS oncogene family Rab4b 50866 NM_017355 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1367956_at NM_053543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053543.1 /DB_XREF=gi:16758967 /GEN=Ncdn-pending /FEA=FLmRNA /CNT=14 /TID=Rn.5653.1 /TIER=FL+Stack /STK=12 /UG=Rn.5653 /LL=89791 /DEF=Rattus norvegicus neurochondrin (Ncdn-pending), mRNA. /PROD=neurochondrin /FL=gb:NM_053543.1 gb:AB006461.1 NM_053543 neurochondrin Ncdn 89791 NM_053543 0031175 // neuron projection development // inferred from expression pattern /// 0045453 // bone resorption // inferred from electronic annotation /// 0045453 // bone resorption // not recorded /// 0048168 // regulation of neuronal synaptic plasticity // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay 1367957_at NM_019340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019340.1 /DB_XREF=gi:18644717 /GEN=Rgs3 /FEA=FLmRNA /CNT=14 /TID=Rn.15658.1 /TIER=FL+Stack /STK=12 /UG=Rn.15658 /DEF=Rattus norvegicus regulator of G-protein signaling 3 (Rgs3), mRNA. /PROD=regulator of G-protein signaling 3 /FL=gb:NM_019340.1 gb:AB055153.1 NM_019340 regulator of G-protein signaling 3 Rgs3 54293 NM_019340 0007165 // signal transduction // inferred from direct assay /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1367958_at NM_024397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024397.1 /DB_XREF=gi:13242309 /GEN=Abi1 /FEA=FLmRNA /CNT=14 /TID=Rn.24800.1 /TIER=FL+Stack /STK=12 /UG=Rn.24800 /LL=79249 /DEF=Rattus norvegicus eps8 binding protein (e3B1), alternatively spliced (Abi1), mRNA. /PROD=eps8 binding protein (e3B1), alternativelyspliced /FL=gb:NM_024397.1 gb:AF176784.1 NM_024397 abl-interactor 1 Abi1 79249 NM_024397 0001756 // somitogenesis // not recorded /// 0001756 // somitogenesis // inferred from electronic annotation /// 0006928 // cellular component movement // not recorded /// 0009987 // cellular process // not recorded /// 0009987 // cellular process // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0042327 // positive regulation of phosphorylation // not recorded /// 0061098 // positive regulation of protein tyrosine kinase activity // not recorded 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030175 // filopodium // inferred from electronic annotation /// 0030175 // filopodium // not recorded /// 0030426 // growth cone // inferred from electronic annotation /// 0031252 // cell leading edge // not recorded /// 0031252 // cell leading edge // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030296 // protein tyrosine kinase activator activity // not recorded /// 0030296 // protein tyrosine kinase activator activity // inferred from electronic annotation 1367959_a_at AF182949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF182949.1 /DB_XREF=gi:6694220 /GEN=SCN1B /FEA=FLmRNA /CNT=1 /TID=Rn.4958.2 /TIER=FL /STK=1 /UG=Rn.4958 /LL=29686 /DEF=Rattus norvegicus voltage-gated sodium channel subunit beta1-A (SCN1B) mRNA, alternatively spliced, complete cds. /PROD=voltage-gated sodium channel subunit beta1-A /FL=gb:AF182949.1 AF182949 sodium channel, voltage-gated, type I, beta Scn1b 29686 NM_017288 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0046684 // response to pyrethroid // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017080 // sodium channel regulator activity // inferred from direct assay 1367960_at NM_019186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019186.1 /DB_XREF=gi:9506402 /GEN=Arl4 /FEA=FLmRNA /CNT=14 /TID=Rn.9258.1 /TIER=FL+Stack /STK=12 /UG=Rn.9258 /LL=29308 /DEF=Rattus norvegicus ADP-ribosylation-like 4 (Arl4), mRNA. /PROD=ADP-ribosylation-like 4 /FL=gb:NM_019186.1 NM_019186 ADP-ribosylation factor-like 4A Arl4a 29308 NM_019186 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded 1367961_at NM_031523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031523.1 /DB_XREF=gi:13994130 /GEN=Ngfg /FEA=FLmRNA /CNT=14 /TID=Rn.11331.1 /TIER=FL+Stack /STK=12 /UG=Rn.11331 /LL=24594 /DEF=Rattus norvegicus Nerve growth factor, gamma polypeptide (Ngfg), mRNA. /PROD=nerve growth factor, gamma polypeptide /FL=gb:M11563.1 gb:NM_031523.1 NM_031523 kallikrein 1-related peptidase b3 Klk1b3 24594 NM_031523 0006508 // proteolysis // inferred from electronic annotation /// 0007165 // signal transduction // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005057 // receptor signaling protein activity // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1367962_at NM_133424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133424.1 /DB_XREF=gi:19173799 /GEN=Actn3 /FEA=FLmRNA /CNT=13 /TID=Rn.17592.1 /TIER=FL+Stack /STK=12 /UG=Rn.17592 /DEF=Rattus norvegicus actinin alpha 3 (Actn3), mRNA. /PROD=actinin alpha 3 /FL=gb:AF450248.1 gb:NM_133424.1 NM_133424 actinin alpha 3 Actn3 171009 NM_133424 0006936 // muscle contraction // inferred from electronic annotation /// 0006936 // muscle contraction // not recorded /// 0048041 // focal adhesion assembly // not recorded 0005925 // focal adhesion // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051015 // actin filament binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1367963_at NM_022404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022404.1 /DB_XREF=gi:11693177 /GEN=Gbl /FEA=FLmRNA /CNT=13 /TID=Rn.9444.1 /TIER=FL+Stack /STK=12 /UG=Rn.9444 /LL=64226 /DEF=Rattus norvegicus G beta-like protein (Gbl), mRNA. /PROD=G beta-like protein /FL=gb:NM_022404.1 gb:AF051155.2 NM_022404 MTOR associated protein, LST8 homolog (S. cerevisiae) Mlst8 64226 NM_022404 0030838 // positive regulation of actin filament polymerization // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // not recorded /// 0032008 // positive regulation of TOR signaling cascade // not recorded /// 0032314 // regulation of Rac GTPase activity // inferred from electronic annotation /// 0032314 // regulation of Rac GTPase activity // not recorded /// 0032956 // regulation of actin cytoskeleton organization // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded 1367964_at NM_017185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017185.1 /DB_XREF=gi:8394465 /GEN=Tnni2 /FEA=FLmRNA /CNT=15 /TID=Rn.9924.1 /TIER=FL+Stack /STK=12 /UG=Rn.9924 /LL=29389 /DEF=Rattus norvegicus troponin I, skeletal, fast 2 (Tnni2), mRNA. /PROD=troponin I, skeletal, fast 2 /FL=gb:NM_017185.1 gb:M73701.1 NM_017185 troponin I type 2 (skeletal, fast) Tnni2 29389 NM_017185 0003009 // skeletal muscle contraction // not recorded /// 0006937 // regulation of muscle contraction // inferred from direct assay /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // not recorded /// 0005861 // troponin complex // inferred from direct assay /// 0005861 // troponin complex // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005515 // protein binding // not recorded /// 0031014 // troponin T binding // not recorded 1367965_at NM_012652 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012652.1 /DB_XREF=gi:6981557 /GEN=Slc9a1 /FEA=FLmRNA /CNT=14 /TID=Rn.5025.1 /TIER=FL+Stack /STK=12 /UG=Rn.5025 /LL=24782 /DEF=Rattus norvegicus Solute carrier family 9 (sodiumhydrogen exchanger 1), antiporter, Na+H+, (amiloride sensitive) (Slc9a1), mRNA. /PROD=solute carrier family 9 (sodiumhydrogenexchanger 1), antiporter, Na+H+, (amiloride sensitive) /FL=gb:M85299.1 gb:NM_012652.1 NM_012652 solute carrier family 9 (sodium/hydrogen exchanger), member 1 Slc9a1 24782 NM_012652 0001101 // response to acid // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006814 // sodium ion transport // not recorded /// 0006814 // sodium ion transport // traceable author statement /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006885 // regulation of pH // not recorded /// 0006885 // regulation of pH // traceable author statement /// 0006885 // regulation of pH // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from mutant phenotype /// 0010447 // response to acidity // not recorded /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0015992 // proton transport // not recorded /// 0016049 // cell growth // inferred from expression pattern /// 0030154 // cell differentiation // inferred from expression pattern /// 0034220 // ion transmembrane transport // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from direct assay /// 0015297 // antiporter activity // inferred from electronic annotation /// 0015299 // solute:hydrogen antiporter activity // inferred from electronic annotation /// 0015385 // sodium:hydrogen antiporter activity // inferred from mutant phenotype /// 0015385 // sodium:hydrogen antiporter activity // not recorded /// 0015385 // sodium:hydrogen antiporter activity // traceable author statement /// 0015385 // sodium:hydrogen antiporter activity // inferred from electronic annotation 1367966_at NM_053748 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053748.1 /DB_XREF=gi:16758577 /GEN=Dpp3 /FEA=FLmRNA /CNT=13 /TID=Rn.10902.1 /TIER=FL+Stack /STK=12 /UG=Rn.10902 /LL=114591 /DEF=Rattus norvegicus dipeptidylpeptidase III (Dpp3), mRNA. /PROD=dipeptidylpeptidase III /FL=gb:D89340.2 gb:NM_053748.1 NM_053748 dipeptidylpeptidase 3 /// similar to Dipeptidyl-peptidase 3 (Dipeptidyl-peptidase III) (DPP III) (Dipeptidyl aminopeptidase III) (Dipeptidyl arylamidase III) Dpp3 /// LOC678760 114591 /// 678760 NM_053748 /// XM_001053134 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008239 // dipeptidyl-peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367967_at NM_053667 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053667.1 /DB_XREF=gi:16758481 /GEN=Gros1 /FEA=FLmRNA /CNT=13 /TID=Rn.13741.1 /TIER=FL+Stack /STK=12 /UG=Rn.13741 /LL=114200 /DEF=Rattus norvegicus growth supressor 1 (Gros1), mRNA. /PROD=growth supressor 1 /FL=gb:NM_053667.1 gb:AF087433.1 NM_053667 leucine proline-enriched proteoglycan (leprecan) 1 Lepre1 114200 NM_053667 0016049 // cell growth // inferred from electronic annotation /// 0016049 // cell growth // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0019797 // procollagen-proline 3-dioxygenase activity // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367968_at NM_133622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133622.1 /DB_XREF=gi:19424345 /GEN=LOC171161 /FEA=FLmRNA /CNT=12 /TID=Rn.9752.1 /TIER=FL+Stack /STK=12 /UG=Rn.9752 /LL=171161 /DEF=Rattus norvegicus common salivary protein 1 (LOC171161), mRNA. /PROD=common salivary protein 1 /FL=gb:U00964.1 gb:NM_133622.1 NM_133622 common salivary protein 1 LOC171161 171161 NM_133622 0005615 // extracellular space // inferred from direct assay 1367969_at AF014009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF014009.1 /DB_XREF=gi:2317734 /GEN=aiPLA2 /FEA=FLmRNA /CNT=36 /TID=Rn.42.1 /TIER=FL+Stack /STK=11 /UG=Rn.42 /LL=94167 /DEF=Rattus norvegicus acidic calcium-independent phospholipase A2 (aiPLA2) mRNA, complete cds. /PROD=acidic calcium-independent phospholipase A2 /FL=gb:NM_053576.1 gb:AF014009.1 AF014009 peroxiredoxin 6 Prdx6 94167 NM_053576 0000302 // response to reactive oxygen species // not recorded /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0008152 // metabolic process // not recorded /// 0009395 // phospholipid catabolic process // inferred from electronic annotation /// 0009395 // phospholipid catabolic process // not recorded /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0032060 // bleb assembly // not recorded /// 0042744 // hydrogen peroxide catabolic process // inferred from direct assay /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004601 // peroxidase activity // not recorded /// 0004601 // peroxidase activity // inferred from electronic annotation /// 0004602 // glutathione peroxidase activity // inferred from direct assay /// 0004623 // phospholipase A2 activity // inferred from electronic annotation /// 0004623 // phospholipase A2 activity // not recorded /// 0016209 // antioxidant activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0051920 // peroxiredoxin activity // inferred from electronic annotation 1367970_at AF228737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF228737.1 /DB_XREF=gi:10952517 /GEN=Pfn2 /FEA=FLmRNA /CNT=34 /TID=Rn.3515.1 /TIER=FL /STK=1 /UG=Rn.3515 /LL=81531 /DEF=Rattus norvegicus profilin IIa (Pfn2) mRNA, complete cds, alternatively spliced. /PROD=profilin IIa /FL=gb:AF228736.1 gb:NM_030873.1 gb:AY004289.1 gb:AF228737.1 AF228737 profilin 2 Pfn2 81531 NM_030873 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030833 // regulation of actin filament polymerization // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367971_at NM_053475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053475.1 /DB_XREF=gi:17865336 /GEN=Ptp4a2 /FEA=FLmRNA /CNT=37 /TID=Rn.2045.1 /TIER=FL+Stack /STK=11 /UG=Rn.2045 /LL=85237 /DEF=Rattus norvegicus protein tyrosine phosphatase type IVA, member 2 (Ptp4a2), mRNA. /PROD=protein tyrosine phosphatase type IVA, member 2 /FL=gb:NM_053475.1 NM_053475 protein tyrosine phosphatase 4a2 Ptp4a2 85237 NM_053475 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1367972_at NM_054004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_054004.1 /DB_XREF=gi:16758919 /GEN=Tip120A /FEA=FLmRNA /CNT=25 /TID=Rn.32934.1 /TIER=FL+Stack /STK=11 /UG=Rn.32934 /LL=117152 /DEF=Rattus norvegicus TBP-interacting protein 120A (Tip120A), mRNA. /PROD=TBP-interacting protein 120A /FL=gb:NM_054004.1 gb:D87671.1 NM_054004 cullin-associated and neddylation-dissociated 1 Cand1 117152 NM_054004 0006350 // transcription // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from sequence or structural similarity /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // not recorded /// 0043086 // negative regulation of catalytic activity // inferred from sequence or structural similarity /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045899 // positive regulation of RNA polymerase II transcriptional preinitiation complex assembly // inferred from direct assay 0000151 // ubiquitin ligase complex // not recorded /// 0000151 // ubiquitin ligase complex // inferred from sequence or structural similarity /// 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0017025 // TATA-binding protein binding // inferred from direct assay 1367973_at NM_031530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031530.1 /DB_XREF=gi:13928713 /GEN=Scya2 /FEA=FLmRNA /CNT=21 /TID=Rn.4772.1 /TIER=FL+Stack /STK=11 /UG=Rn.4772 /LL=24770 /DEF=Rattus norvegicus Small inducible gene JE (Scya2), mRNA. /PROD=small inducible gene JE /FL=gb:AF058786.1 gb:M57441.1 gb:NM_031530.1 NM_031530 chemokine (C-C motif) ligand 2 Ccl2 24770 NM_031530 0001666 // response to hypoxia // inferred from expression pattern /// 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0002548 // monocyte chemotaxis // inferred from electronic annotation /// 0002548 // monocyte chemotaxis // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from direct assay /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from expression pattern /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0009408 // response to heat // inferred from direct assay /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009617 // response to bacterium // inferred from electronic annotation /// 0009617 // response to bacterium // not recorded /// 0010332 // response to gamma radiation // inferred from expression pattern /// 0010574 // regulation of vascular endothelial growth factor production // not recorded /// 0010759 // positive regulation of macrophage chemotaxis // not recorded /// 0014823 // response to activity // inferred from expression pattern /// 0016525 // negative regulation of angiogenesis // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from mutant phenotype /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // inferred from mutant phenotype /// 0031100 // organ regeneration // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0033552 // response to vitamin B3 // inferred from expression pattern /// 0042466 // chemokinesis // traceable author statement /// 0042493 // response to drug // inferred from expression pattern /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0046677 // response to antibiotic // inferred from expression pattern /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from mutant phenotype /// 0048246 // macrophage chemotaxis // inferred from direct assay /// 0048246 // macrophage chemotaxis // not recorded /// 0048246 // macrophage chemotaxis // inferred from electronic annotation /// 0048247 // lymphocyte chemotaxis // inferred from direct assay /// 0050806 // positive regulation of synaptic transmission // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0060137 // maternal process involved in parturition // inferred from expression pattern /// 0070098 // chemokine-mediated signaling pathway // inferred from mutant phenotype /// 0090265 // positive regulation of immune complex clearance by monocytes and macrophages // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0001664 // G-protein-coupled receptor binding // inferred from electronic annotation /// 0001664 // G-protein-coupled receptor binding // not recorded /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008009 // chemokine activity // inferred from direct assay /// 0008009 // chemokine activity // non-traceable author statement /// 0008009 // chemokine activity // traceable author statement /// 0008009 // chemokine activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from physical interaction /// 0031727 // CCR2 chemokine receptor binding // inferred from mutant phenotype 1367974_at NM_012823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012823.1 /DB_XREF=gi:6978502 /GEN=Anx3 /FEA=FLmRNA /CNT=24 /TID=Rn.6589.1 /TIER=FL+Stack /STK=11 /UG=Rn.6589 /LL=25291 /DEF=Rattus norvegicus Annexin A3 (Anx3), mRNA. /PROD=Annexin A3 /FL=gb:NM_012823.1 gb:M20559.1 NM_012823 annexin A3 Anxa3 25291 NM_012823 0006909 // phagocytosis // inferred from electronic annotation /// 0006909 // phagocytosis // not recorded /// 0010595 // positive regulation of endothelial cell migration // inferred from electronic annotation /// 0010595 // positive regulation of endothelial cell migration // not recorded /// 0021766 // hippocampus development // inferred from expression pattern /// 0031100 // organ regeneration // inferred from expression pattern /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0042742 // defense response to bacterium // not recorded /// 0043312 // neutrophil degranulation // inferred from electronic annotation /// 0043312 // neutrophil degranulation // not recorded /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0051054 // positive regulation of DNA metabolic process // inferred from mutant phenotype /// 0051091 // positive regulation of transcription factor activity // inferred from electronic annotation /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0070848 // response to growth factor stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030670 // phagocytic vesicle membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // not recorded /// 0042581 // specific granule // inferred from electronic annotation /// 0042581 // specific granule // not recorded /// 0043025 // neuronal cell body // inferred from direct assay 0004859 // phospholipase inhibitor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // inferred from direct assay /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // not recorded /// 0019834 // phospholipase A2 inhibitor activity // inferred from direct assay /// 0019834 // phospholipase A2 inhibitor activity // inferred from electronic annotation 1367975_at BF283732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283732 /DB_XREF=gi:11214802 /DB_XREF=EST448323 /CLONE=RGIEG12 /FEA=FLmRNA /CNT=24 /TID=Rn.6589.1 /TIER=ConsEnd /STK=2 /UG=Rn.6589 /LL=25291 /UG_GENE=Anx3 /UG_TITLE=Annexin A3 /FL=gb:NM_012823.1 gb:M20559.1 BF283732 annexin A3 Anxa3 25291 NM_012823 0006909 // phagocytosis // inferred from electronic annotation /// 0006909 // phagocytosis // not recorded /// 0010595 // positive regulation of endothelial cell migration // inferred from electronic annotation /// 0010595 // positive regulation of endothelial cell migration // not recorded /// 0021766 // hippocampus development // inferred from expression pattern /// 0031100 // organ regeneration // inferred from expression pattern /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0042742 // defense response to bacterium // not recorded /// 0043312 // neutrophil degranulation // inferred from electronic annotation /// 0043312 // neutrophil degranulation // not recorded /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0051054 // positive regulation of DNA metabolic process // inferred from mutant phenotype /// 0051091 // positive regulation of transcription factor activity // inferred from electronic annotation /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0070848 // response to growth factor stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030670 // phagocytic vesicle membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // not recorded /// 0042581 // specific granule // inferred from electronic annotation /// 0042581 // specific granule // not recorded /// 0043025 // neuronal cell body // inferred from direct assay 0004859 // phospholipase inhibitor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // inferred from direct assay /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // not recorded /// 0019834 // phospholipase A2 inhibitor activity // inferred from direct assay /// 0019834 // phospholipase A2 inhibitor activity // inferred from electronic annotation 1367976_at NM_031137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031137.1 /DB_XREF=gi:13592120 /GEN=Tpp2 /FEA=FLmRNA /CNT=23 /TID=Rn.28991.1 /TIER=FL+Stack /STK=11 /UG=Rn.28991 /LL=81815 /DEF=Rattus norvegicus tripeptidylpeptidase II (Tpp2), mRNA. /PROD=tripeptidylpeptidase II /FL=gb:U50194.1 gb:NM_031137.1 NM_031137 tripeptidyl peptidase II Tpp2 81815 NM_031137 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // traceable author statement 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0008240 // tripeptidyl-peptidase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay 1367977_at NM_019169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019169.1 /DB_XREF=gi:9507124 /GEN=Snca /FEA=FLmRNA /CNT=19 /TID=Rn.1827.1 /TIER=FL+Stack /STK=11 /UG=Rn.1827 /LL=29219 /DEF=Rattus norvegicus synuclein, alpha (Snca), mRNA. /PROD=synuclein, alpha /FL=gb:NM_019169.1 gb:AF007758.1 NM_019169 synuclein, alpha (non A4 component of amyloid precursor) Snca 29219 NM_019169 0001774 // microglial cell activation // not recorded /// 0001774 // microglial cell activation // inferred from electronic annotation /// 0001921 // positive regulation of receptor recycling // not recorded /// 0001921 // positive regulation of receptor recycling // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // inferred from mutant phenotype /// 0001956 // positive regulation of neurotransmitter secretion // not recorded /// 0001956 // positive regulation of neurotransmitter secretion // inferred from electronic annotation /// 0001963 // synaptic transmission, dopaminergic // not recorded /// 0001963 // synaptic transmission, dopaminergic // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // not recorded /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006638 // neutral lipid metabolic process // not recorded /// 0006638 // neutral lipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // not recorded /// 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0007006 // mitochondrial membrane organization // not recorded /// 0007006 // mitochondrial membrane organization // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0010040 // response to iron(II) ion // not recorded /// 0010040 // response to iron(II) ion // inferred from electronic annotation /// 0010517 // regulation of phospholipase activity // not recorded /// 0010517 // regulation of phospholipase activity // inferred from electronic annotation /// 0010642 // negative regulation of platelet-derived growth factor receptor signaling pathway // not recorded /// 0010642 // negative regulation of platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0014048 // regulation of glutamate secretion // not recorded /// 0014048 // regulation of glutamate secretion // inferred from electronic annotation /// 0014059 // regulation of dopamine secretion // inferred from electronic annotation /// 0014059 // regulation of dopamine secretion // not recorded /// 0016044 // cellular membrane organization // not recorded /// 0016044 // cellular membrane organization // inferred from electronic annotation /// 0031623 // receptor internalization // not recorded /// 0031623 // receptor internalization // inferred from electronic annotation /// 0032026 // response to magnesium ion // not recorded /// 0032026 // response to magnesium ion // inferred from electronic annotation /// 0032410 // negative regulation of transporter activity // not recorded /// 0032410 // negative regulation of transporter activity // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032769 // negative regulation of monooxygenase activity // not recorded /// 0032769 // negative regulation of monooxygenase activity // inferred from electronic annotation /// 0034341 // response to interferon-gamma // not recorded /// 0034341 // response to interferon-gamma // inferred from electronic annotation /// 0034599 // cellular response to oxidative stress // not recorded /// 0034599 // cellular response to oxidative stress // inferred from electronic annotation /// 0035067 // negative regulation of histone acetylation // not recorded /// 0035067 // negative regulation of histone acetylation // inferred from electronic annotation /// 0040012 // regulation of locomotion // not recorded /// 0040012 // regulation of locomotion // inferred from electronic annotation /// 0042416 // dopamine biosynthetic process // not recorded /// 0042416 // dopamine biosynthetic process // inferred from electronic annotation /// 0042417 // dopamine metabolic process // not recorded /// 0042417 // dopamine metabolic process // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042775 // mitochondrial ATP synthesis coupled electron transport // not recorded /// 0042775 // mitochondrial ATP synthesis coupled electron transport // inferred from electronic annotation /// 0043030 // regulation of macrophage activation // not recorded /// 0043030 // regulation of macrophage activation // inferred from electronic annotation /// 0043154 // negative regulation of caspase activity // not recorded /// 0043154 // negative regulation of caspase activity // inferred from electronic annotation /// 0043523 // regulation of neuron apoptosis // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from mutant phenotype /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0045807 // positive regulation of endocytosis // not recorded /// 0045807 // positive regulation of endocytosis // inferred from electronic annotation /// 0045920 // negative regulation of exocytosis // not recorded /// 0045920 // negative regulation of exocytosis // inferred from electronic annotation /// 0045963 // negative regulation of dopamine metabolic process // inferred from mutant phenotype /// 0046928 // regulation of neurotransmitter secretion // not recorded /// 0046928 // regulation of neurotransmitter secretion // inferred from electronic annotation /// 0048148 // behavioral response to cocaine // inferred from mutant phenotype /// 0048168 // regulation of neuronal synaptic plasticity // not recorded /// 0048168 // regulation of neuronal synaptic plasticity // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // not recorded /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048488 // synaptic vesicle endocytosis // not recorded /// 0048488 // synaptic vesicle endocytosis // inferred from electronic annotation /// 0048489 // synaptic vesicle transport // not recorded /// 0048489 // synaptic vesicle transport // inferred from electronic annotation /// 0050806 // positive regulation of synaptic transmission // not recorded /// 0050806 // positive regulation of synaptic transmission // inferred from electronic annotation /// 0050812 // regulation of acyl-CoA biosynthetic process // not recorded /// 0050812 // regulation of acyl-CoA biosynthetic process // inferred from electronic annotation /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // not recorded /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from electronic annotation /// 0051585 // negative regulation of dopamine uptake // not recorded /// 0051585 // negative regulation of dopamine uptake // inferred from electronic annotation /// 0051612 // negative regulation of serotonin uptake // not recorded /// 0051612 // negative regulation of serotonin uptake // inferred from electronic annotation /// 0051622 // negative regulation of norepinephrine uptake // not recorded /// 0051622 // negative regulation of norepinephrine uptake // inferred from electronic annotation /// 0055074 // calcium ion homeostasis // not recorded /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060291 // long-term synaptic potentiation // not recorded /// 0060291 // long-term synaptic potentiation // inferred from electronic annotation /// 0060732 // positive regulation of inositol phosphate biosynthetic process // not recorded /// 0060732 // positive regulation of inositol phosphate biosynthetic process // inferred from electronic annotation /// 0070495 // negative regulation of thrombin receptor signaling pathway // not recorded /// 0070495 // negative regulation of thrombin receptor signaling pathway // inferred from electronic annotation /// 0070555 // response to interleukin-1 // not recorded /// 0070555 // response to interleukin-1 // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005856 // cytoskeleton // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0005938 // cell cortex // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0015629 // actin cytoskeleton // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0019717 // synaptosome // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0030426 // growth cone // not recorded /// 0030426 // growth cone // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from direct assay /// 0031092 // platelet alpha granule membrane // not recorded /// 0031092 // platelet alpha granule membrane // inferred from electronic annotation /// 0043195 // terminal button // inferred from direct assay /// 0043205 // fibril // not recorded /// 0043205 // fibril // inferred from electronic annotation /// 0043679 // axon terminus // inferred from direct assay 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0005504 // fatty acid binding // not recorded /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from direct assay /// 0008017 // microtubule binding // inferred from direct assay /// 0008198 // ferrous iron binding // not recorded /// 0008198 // ferrous iron binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019894 // kinesin binding // not recorded /// 0019894 // kinesin binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030544 // Hsp70 protein binding // not recorded /// 0030544 // Hsp70 protein binding // inferred from electronic annotation /// 0042393 // histone binding // not recorded /// 0042393 // histone binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0043014 // alpha-tubulin binding // not recorded /// 0043014 // alpha-tubulin binding // inferred from electronic annotation /// 0043027 // caspase inhibitor activity // not recorded /// 0043027 // caspase inhibitor activity // inferred from electronic annotation /// 0043274 // phospholipase binding // inferred from physical interaction /// 0043274 // phospholipase binding // not recorded /// 0043274 // phospholipase binding // inferred from electronic annotation /// 0045502 // dynein binding // not recorded /// 0045502 // dynein binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from direct assay /// 0048156 // tau protein binding // not recorded /// 0048156 // tau protein binding // inferred from electronic annotation /// 0050544 // arachidonic acid binding // not recorded /// 0050544 // arachidonic acid binding // inferred from electronic annotation /// 0060961 // phospholipase D inhibitor activity // not recorded 1367978_at NM_031007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031007.1 /DB_XREF=gi:13591905 /GEN=Adcy2 /FEA=FLmRNA /CNT=16 /TID=Rn.10731.1 /TIER=FL+Stack /STK=11 /UG=Rn.10731 /LL=81636 /DEF=Rattus norvegicus adenylyl cyclase 2 (Adcy2), mRNA. /PROD=adenylyl cyclase 2 /FL=gb:M80550.1 gb:NM_031007.1 NM_031007 adenylate cyclase 2 (brain) Adcy2 81636 NM_031007 0006171 // cAMP biosynthetic process // inferred from direct assay /// 0006171 // cAMP biosynthetic process // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0034199 // activation of protein kinase A activity // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0030425 // dendrite // inferred from sequence or structural similarity /// 0030425 // dendrite // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004016 // adenylate cyclase activity // inferred from direct assay /// 0004016 // adenylate cyclase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008294 // calcium- and calmodulin-responsive adenylate cyclase activity // inferred from direct assay /// 0016829 // lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1367979_s_at NM_012941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012941.1 /DB_XREF=gi:6978750 /GEN=Cyp51 /FEA=FLmRNA /CNT=33 /TID=Rn.6150.1 /TIER=FL+Stack /STK=11 /UG=Rn.6150 /LL=25427 /DEF=Rattus norvegicus Cytochrom P450 Lanosterol 14 alpha-demethylase (Cyp51), mRNA. /PROD=cytochrom P450 Lanosterol 14 alpha-demethylase /FL=gb:U17697.1 gb:NM_012941.1 NM_012941 cytochrome P450, family 51 Cyp51 25427 NM_012941 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0033488 // cholesterol biosynthetic process via 24,25-dihydrolanosterol // inferred from direct assay /// 0045540 // regulation of cholesterol biosynthetic process // traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008398 // sterol 14-demethylase activity // inferred from direct assay /// 0008398 // sterol 14-demethylase activity // not recorded /// 0008398 // sterol 14-demethylase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1367980_at NM_019124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019124.1 /DB_XREF=gi:9506844 /GEN=LOC54190 /FEA=FLmRNA /CNT=29 /TID=Rn.5876.1 /TIER=FL+Stack /STK=11 /UG=Rn.5876 /LL=54190 /DEF=Rattus norvegicus rabaptin 5 (LOC54190), mRNA. /PROD=rabaptin 5 /FL=gb:NM_019124.1 gb:D85844.1 gb:U70777.1 NM_019124 rabaptin, RAB GTPase binding effector protein 1 Rabep1 54190 NM_019124 0006810 // transport // inferred from electronic annotation /// 0006895 // Golgi to endosome transport // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043234 // protein complex // traceable author statement /// 0055037 // recycling endosome // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1367981_at U70777 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U70777.1 /DB_XREF=gi:1575769 /FEA=FLmRNA /CNT=29 /TID=Rn.5876.1 /TIER=FL /STK=1 /UG=Rn.5876 /LL=54190 /UG_GENE=LOC54190 /DEF=Rattus norvegicus rabaptin mRNA, complete cds. /PROD=rabaptin /FL=gb:NM_019124.1 gb:D85844.1 gb:U70777.1 U70777 rabaptin, RAB GTPase binding effector protein 1 Rabep1 54190 NM_019124 0006810 // transport // inferred from electronic annotation /// 0006895 // Golgi to endosome transport // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043234 // protein complex // traceable author statement /// 0055037 // recycling endosome // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1367982_at NM_024484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024484.1 /DB_XREF=gi:13324697 /GEN=Alas1 /FEA=FLmRNA /CNT=18 /TID=Rn.6274.1 /TIER=FL+Stack /STK=11 /UG=Rn.6274 /LL=65155 /DEF=Rattus norvegicus aminolevulinic acid synthase 1 (Alas1), mRNA. /PROD=aminolevulinate synthase H /FL=gb:J04044.1 gb:NM_024484.1 gb:J03190.1 NM_024484 aminolevulinate, delta-, synthase 1 Alas1 65155 NM_024484 0001666 // response to hypoxia // inferred from expression pattern /// 0006778 // porphyrin metabolic process // inferred from electronic annotation /// 0006783 // heme biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009635 // response to herbicide // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0010045 // response to nickel ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032025 // response to cobalt ion // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0033014 // tetrapyrrole biosynthetic process // inferred from electronic annotation /// 0034698 // response to gonadotropin stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0070541 // response to platinum ion // inferred from expression pattern /// 0071407 // cellular response to organic cyclic substance // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003870 // 5-aminolevulinate synthase activity // inferred from direct assay /// 0003870 // 5-aminolevulinate synthase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1367983_at NM_053430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053430.1 /DB_XREF=gi:16758169 /GEN=Fen1 /FEA=FLmRNA /CNT=17 /TID=Rn.16664.1 /TIER=FL+Stack /STK=11 /UG=Rn.16664 /LL=84490 /DEF=Rattus norvegicus Flap structure-specific endonuclease 1 (Fen1), mRNA. /PROD=flap structure-specific endonuclease /FL=gb:AF281018.1 gb:NM_053430.1 NM_053430 flap structure-specific endonuclease 1 Fen1 84490 NM_053430 0006260 // DNA replication // not recorded /// 0006260 // DNA replication // inferred from electronic annotation /// 0006281 // DNA repair // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0043137 // DNA replication, removal of RNA primer // not recorded /// 0043137 // DNA replication, removal of RNA primer // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004523 // ribonuclease H activity // not recorded /// 0004523 // ribonuclease H activity // inferred from electronic annotation /// 0004527 // exonuclease activity // not recorded /// 0004527 // exonuclease activity // non-traceable author statement /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008409 // 5'-3' exonuclease activity // not recorded /// 0008409 // 5'-3' exonuclease activity // inferred from electronic annotation /// 0017108 // 5'-flap endonuclease activity // not recorded /// 0017108 // 5'-flap endonuclease activity // inferred from electronic annotation /// 0030145 // manganese ion binding // not recorded /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0048256 // flap endonuclease activity // not recorded /// 0048256 // flap endonuclease activity // inferred from electronic annotation 1367984_at NM_019384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019384.1 /DB_XREF=gi:9507016 /GEN=rA1 /FEA=FLmRNA /CNT=15 /TID=Rn.93.1 /TIER=FL+Stack /STK=11 /UG=Rn.93 /LL=56081 /DEF=Rattus norvegicus CTD-binding SR-like (rA1), mRNA. /PROD=CTD-binding SR-like /FL=gb:U49056.1 gb:NM_019384.1 NM_019384 SR-related CTD-associated factor 1 Scaf1 56081 NM_019384 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006397 // mRNA processing // inferred from mutant phenotype /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from mutant phenotype 1367985_at NM_013197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013197.1 /DB_XREF=gi:6978484 /GEN=Alas2 /FEA=FLmRNA /CNT=15 /TID=Rn.32517.1 /TIER=FL+Stack /STK=11 /UG=Rn.32517 /LL=25748 /DEF=Rattus norvegicus Aminolevulinate synthase 2, delta (Alas2), mRNA. /PROD=aminolevulinate synthase 2, delta /FL=gb:NM_013197.1 gb:D86297.1 NM_013197 aminolevulinate, delta-, synthase 2 Alas2 25748 NM_013197 0001666 // response to hypoxia // inferred from expression pattern /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from sequence or structural similarity /// 0006778 // porphyrin metabolic process // inferred from electronic annotation /// 0006783 // heme biosynthetic process // not recorded /// 0006783 // heme biosynthetic process // inferred from sequence or structural similarity /// 0006783 // heme biosynthetic process // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // not recorded /// 0007565 // female pregnancy // inferred from expression pattern /// 0007595 // lactation // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0010288 // response to lead ion // inferred from expression pattern /// 0030218 // erythrocyte differentiation // not recorded /// 0030218 // erythrocyte differentiation // inferred from sequence or structural similarity /// 0033014 // tetrapyrrole biosynthetic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042541 // hemoglobin biosynthetic process // not recorded /// 0042541 // hemoglobin biosynthetic process // inferred from sequence or structural similarity 0005625 // soluble fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003870 // 5-aminolevulinate synthase activity // inferred from direct assay /// 0003870 // 5-aminolevulinate synthase activity // not recorded /// 0003870 // 5-aminolevulinate synthase activity // inferred from sequence or structural similarity /// 0003870 // 5-aminolevulinate synthase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016594 // glycine binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0020037 // heme binding // inferred from sequence or structural similarity /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from direct assay 1367986_at NM_019243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019243.1 /DB_XREF=gi:9507006 /GEN=Ptgfrn /FEA=FLmRNA /CNT=28 /TID=Rn.6332.1 /TIER=FL+Stack /STK=11 /UG=Rn.6332 /LL=29602 /DEF=Rattus norvegicus prostaglandin F2 receptor negative regulator (Ptgfrn), mRNA. /PROD=prostaglandin F2 receptor negative regulator /FL=gb:U26595.1 gb:NM_019243.1 NM_019243 prostaglandin F2 receptor negative regulator Ptgfrn 29602 NM_019243 0017148 // negative regulation of translation // non-traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1367987_at NM_031097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031097.1 /DB_XREF=gi:13592046 /GEN=Rnpep /FEA=FLmRNA /CNT=16 /TID=Rn.10979.1 /TIER=FL+Stack /STK=11 /UG=Rn.10979 /LL=81761 /DEF=Rattus norvegicus aminopeptidase B (Rnpep), mRNA. /PROD=aminopeptidase B /FL=gb:NM_031097.1 gb:D87515.1 gb:U61696.1 NM_031097 arginyl aminopeptidase (aminopeptidase B) Rnpep 81761 NM_031097 0006508 // proteolysis // inferred by curator /// 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0016485 // protein processing // non-traceable author statement /// 0019370 // leukotriene biosynthetic process // inferred from electronic annotation /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0060041 // retina development in camera-type eye // inferred from expression pattern 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // non-traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0019717 // synaptosome // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay 0004177 // aminopeptidase activity // inferred from direct assay /// 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0008270 // zinc ion binding // non-traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050897 // cobalt ion binding // inferred from direct assay /// 0070006 // metalloaminopeptidase activity // inferred from direct assay 1367988_at U04733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U04733.1 /DB_XREF=gi:438418 /GEN=cyp 2C23 /FEA=FLmRNA /CNT=16 /TID=Rn.2184.1 /TIER=FL+Stack /STK=11 /UG=Rn.2184 /LL=83790 /DEF=Rattus norvegicus Sprague Dawley cytochrome P450 arachidonic acid epoxygenase (cyp 2C23) mRNA, complete cds. /PROD=cytochrome P450 arachidonic acid epoxygenase /FL=gb:U04733.1 gb:NM_031839.1 U04733 cytochrome P450, family 2, subfamily c, polypeptide 23 Cyp2c23 83790 NM_031839 0019369 // arachidonic acid metabolic process // non-traceable author statement /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008392 // arachidonic acid epoxygenase activity // inferred from direct assay /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1367989_at NM_012751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012751.1 /DB_XREF=gi:6980957 /GEN=Glut4 /FEA=FLmRNA /CNT=15 /TID=Rn.1314.1 /TIER=FL+Stack /STK=11 /UG=Rn.1314 /LL=25139 /DEF=Rattus norvegicus solute carrier family 2 (facilitated glucose transporter), member 4 (Glut4), mRNA. /PROD=solute carrier family 2 (facilitated glucosetransporter), member 4 /FL=gb:M25482.1 gb:J04524.1 gb:NM_012751.1 NM_012751 solute carrier family 2 (facilitated glucose transporter), member 4 Slc2a4 25139 NM_012751 0006810 // transport // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0015758 // glucose transport // inferred from direct assay /// 0015758 // glucose transport // inferred from mutant phenotype /// 0015758 // glucose transport // not recorded /// 0015758 // glucose transport // inferred from electronic annotation /// 0035428 // hexose transmembrane transport // not recorded /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042593 // glucose homeostasis // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0000299 // integral to membrane of membrane fraction // inferred from electronic annotation /// 0000299 // integral to membrane of membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005771 // multivesicular body // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005905 // coated pit // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0012506 // vesicle membrane // not recorded /// 0012506 // vesicle membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // not recorded /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0030140 // trans-Golgi network transport vesicle // inferred from electronic annotation /// 0030140 // trans-Golgi network transport vesicle // not recorded /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // not recorded /// 0031982 // vesicle // inferred from direct assay /// 0032593 // insulin-responsive compartment // inferred from direct assay /// 0042383 // sarcolemma // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // not recorded 0005215 // transporter activity // inferred from electronic annotation /// 0005355 // glucose transmembrane transporter activity // inferred from direct assay /// 0005355 // glucose transmembrane transporter activity // inferred from mutant phenotype /// 0005355 // glucose transmembrane transporter activity // not recorded /// 0005355 // glucose transmembrane transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0022891 // substrate-specific transmembrane transporter activity // inferred from electronic annotation /// 0055056 // D-glucose transmembrane transporter activity // inferred from direct assay 1367990_at NM_031690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031690.1 /DB_XREF=gi:13928957 /GEN=Crybb3 /FEA=FLmRNA /CNT=15 /TID=Rn.19693.1 /TIER=FL+Stack /STK=11 /UG=Rn.19693 /LL=64349 /DEF=Rattus norvegicus crystallin, beta B3 (Crybb3), mRNA. /PROD=crystallin, beta B3 /FL=gb:AF287304.1 gb:NM_031690.1 gb:M15901.1 NM_031690 crystallin, beta B3 Crybb3 64349 NM_031690 0005212 // structural constituent of eye lens // inferred from direct assay /// 0005212 // structural constituent of eye lens // traceable author statement /// 0005212 // structural constituent of eye lens // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1367991_at NM_031749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031749.1 /DB_XREF=gi:13994183 /GEN=Gcs1-pending /FEA=FLmRNA /CNT=24 /TID=Rn.22161.1 /TIER=FL+Stack /STK=11 /UG=Rn.22161 /LL=78947 /DEF=Rattus norvegicus glucosidase 1 (Gcs1-pending), mRNA. /PROD=glucosidase 1 /FL=gb:NM_031749.1 gb:AF087431.1 NM_031749 glucosidase 1 Gcs1 78947 NM_031749 0008152 // metabolic process // inferred from electronic annotation /// 0009311 // oligosaccharide metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004573 // mannosyl-oligosaccharide glucosidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation 1367992_at NM_013175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013175.1 /DB_XREF=gi:6981529 /GEN=Sgne1 /FEA=FLmRNA /CNT=22 /TID=Rn.6173.1 /TIER=FL+Stack /STK=11 /UG=Rn.6173 /LL=25719 /DEF=Rattus norvegicus Secretory granule neuroendocrine, protein 1 (7B2 protein) (Sgne1), mRNA. /PROD=secretory granule neuroendocrine, protein 1 (7B2protein) /FL=gb:M63901.1 gb:NM_013175.1 NM_013175 secretogranin V Scg5 25719 NM_013175 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0006886 // intracellular protein transport // inferred from sequence or structural similarity /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0016486 // peptide hormone processing // not recorded /// 0016486 // peptide hormone processing // inferred from sequence or structural similarity /// 0016486 // peptide hormone processing // inferred from electronic annotation /// 0046883 // regulation of hormone secretion // not recorded /// 0046883 // regulation of hormone secretion // inferred from sequence or structural similarity /// 0046883 // regulation of hormone secretion // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from sequence or structural similarity /// 0030141 // stored secretory granule // inferred from electronic annotation 0004857 // enzyme inhibitor activity // not recorded /// 0004857 // enzyme inhibitor activity // inferred from sequence or structural similarity /// 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0051082 // unfolded protein binding // not recorded /// 0051082 // unfolded protein binding // inferred from sequence or structural similarity 1367993_at NM_031745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031745.1 /DB_XREF=gi:13928853 /GEN=Rsn /FEA=FLmRNA /CNT=16 /TID=Rn.22069.1 /TIER=FL+Stack /STK=11 /UG=Rn.22069 /LL=65201 /DEF=Rattus norvegicus restin (Reed-Steinberg cell-espressed intermediate filament-associated protein) (Rsn), mRNA. /PROD=restin (Reed-Steinberg cell-espressedintermediate filament-asso /FL=gb:NM_031745.1 NM_031745 CAP-GLY domain containing linker protein 1 Clip1 65201 NM_031745 0005881 // cytoplasmic microtubule // inferred from direct assay /// 0005881 // cytoplasmic microtubule // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // not recorded /// 0008017 // microtubule binding // traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // traceable author statement /// 0051010 // microtubule plus-end binding // inferred from direct assay /// 0051010 // microtubule plus-end binding // not recorded 1367994_at NM_031027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031027.1 /DB_XREF=gi:13591939 /GEN=Dpyd /FEA=FLmRNA /CNT=16 /TID=Rn.17564.1 /TIER=FL+Stack /STK=11 /UG=Rn.17564 /LL=81656 /DEF=Rattus norvegicus dihydropyrimidine dehydrogenase (Dpyd), mRNA. /PROD=dihydropyrimidine dehydrogenase /FL=gb:NM_031027.1 gb:D85035.1 NM_031027 dihydropyrimidine dehydrogenase Dpyd 81656 NM_031027 0006145 // purine base catabolic process // not recorded /// 0006207 // 'de novo' pyrimidine base biosynthetic process // inferred from electronic annotation /// 0006208 // pyrimidine base catabolic process // inferred from direct assay /// 0006208 // pyrimidine base catabolic process // not recorded /// 0006208 // pyrimidine base catabolic process // traceable author statement /// 0006210 // thymine catabolic process // not recorded /// 0006212 // uracil catabolic process // not recorded /// 0006212 // uracil catabolic process // inferred from sequence or structural similarity /// 0006214 // thymidine catabolic process // not recorded /// 0006214 // thymidine catabolic process // inferred from sequence or structural similarity /// 0006222 // UMP biosynthetic process // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from direct assay /// 0007623 // circadian rhythm // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0019860 // uracil metabolic process // inferred from direct assay /// 0042493 // response to drug // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded 0002058 // uracil binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004152 // dihydroorotate dehydrogenase activity // inferred from electronic annotation /// 0004158 // dihydroorotate oxidase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0017113 // dihydropyrimidine dehydrogenase (NADP+) activity // inferred from direct assay /// 0017113 // dihydropyrimidine dehydrogenase (NADP+) activity // not recorded /// 0017113 // dihydropyrimidine dehydrogenase (NADP+) activity // inferred from sequence or structural similarity /// 0017113 // dihydropyrimidine dehydrogenase (NADP+) activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from direct assay /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 1367995_at NM_012520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012520.1 /DB_XREF=gi:6978606 /GEN=Cat /FEA=FLmRNA /CNT=16 /TID=Rn.3001.1 /TIER=FL+Stack /STK=11 /UG=Rn.3001 /LL=24248 /DEF=Rattus norvegicus Catalase (Cat), mRNA. /PROD=catalase /FL=gb:NM_012520.1 gb:M11670.1 NM_012520 catalase Cat 24248 NM_012520 0000302 // response to reactive oxygen species // inferred from mutant phenotype /// 0000302 // response to reactive oxygen species // not recorded /// 0000302 // response to reactive oxygen species // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // not recorded /// 0006979 // response to oxidative stress // inferred from direct assay /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0009060 // aerobic respiration // inferred from electronic annotation /// 0009060 // aerobic respiration // not recorded /// 0009650 // UV protection // inferred from electronic annotation /// 0009650 // UV protection // not recorded /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0020027 // hemoglobin metabolic process // inferred from electronic annotation /// 0020027 // hemoglobin metabolic process // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0042744 // hydrogen peroxide catabolic process // inferred from direct assay /// 0042744 // hydrogen peroxide catabolic process // inferred from mutant phenotype /// 0042744 // hydrogen peroxide catabolic process // not recorded /// 0042744 // hydrogen peroxide catabolic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051262 // protein tetramerization // inferred from electronic annotation /// 0051262 // protein tetramerization // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005758 // mitochondrial intermembrane space // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // not recorded /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0005778 // peroxisomal membrane // not recorded /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0004046 // aminoacylase activity // inferred from electronic annotation /// 0004046 // aminoacylase activity // not recorded /// 0004096 // catalase activity // inferred from direct assay /// 0004096 // catalase activity // inferred from electronic annotation /// 0004096 // catalase activity // not recorded /// 0004096 // catalase activity // traceable author statement /// 0004601 // peroxidase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016684 // oxidoreductase activity, acting on peroxide as acceptor // not recorded /// 0016684 // oxidoreductase activity, acting on peroxide as acceptor // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0020037 // heme binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // not recorded 1367996_a_at AF111099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF111099.1 /DB_XREF=gi:4185805 /FEA=mRNA /CNT=1 /TID=Rn.10776.4 /TIER=ConsEnd /STK=0 /UG=Rn.10776 /LL=65096 /UG_GENE=CL1BA /UG_TITLE=CL1BA protein /DEF=Rattus norvegicus latrophilin gene, partial sequence. AF111099 latrophilin 1 Lphn1 65096 NM_022962 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0016079 // synaptic vesicle exocytosis // traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from direct assay /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005529 // sugar binding // inferred from electronic annotation /// 0015643 // toxin binding // inferred from physical interaction /// 0016524 // latrotoxin receptor activity // inferred from direct assay /// 0016524 // latrotoxin receptor activity // traceable author statement 1367997_at NM_022947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022947.1 /DB_XREF=gi:12621117 /GEN=Skd3 /FEA=FLmRNA /CNT=14 /TID=Rn.37542.1 /TIER=FL+Stack /STK=11 /UG=Rn.37542 /LL=65041 /DEF=Rattus norvegicus suppressor of K+ transport defect 3 (Skd3), mRNA. /PROD=suppressor of K+ transport defect 3 /FL=gb:NM_022947.1 gb:AB027570.1 NM_022947 ClpB caseinolytic peptidase B homolog (E. coli) Clpb 65041 NM_022947 0034605 // cellular response to heat // inferred from electronic annotation /// 0034605 // cellular response to heat // not recorded 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1367998_at NM_053372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053372.1 /DB_XREF=gi:16758101 /GEN=Slpi /FEA=FLmRNA /CNT=14 /TID=Rn.18560.1 /TIER=FL+Stack /STK=11 /UG=Rn.18560 /LL=84386 /DEF=Rattus norvegicus secretory leukocyte protease inhibitor (Slpi), mRNA. /PROD=secretory leukocyte protease inhibitor /FL=gb:AF178426.1 gb:AF151982.1 gb:NM_053372.1 NM_053372 secretory leukocyte peptidase inhibitor Slpi 84386 NM_053372 0005576 // extracellular region // inferred from electronic annotation 0008233 // peptidase activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1367999_at NM_032416 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032416.1 /DB_XREF=gi:14192932 /GEN=Aldh2 /FEA=FLmRNA /CNT=13 /TID=Rn.2300.1 /TIER=FL+Stack /STK=11 /UG=Rn.2300 /LL=29539 /DEF=Rattus norvegicus aldehyde dehydrogenase 2, mitochondrial (Aldh2), mRNA. /PROD=aldehyde dehydrogenase 2, mitochondrial /FL=gb:NM_032416.1 NM_032416 aldehyde dehydrogenase 2 family (mitochondrial) Aldh2 29539 NM_032416 0001889 // liver development // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0035094 // response to nicotine // inferred from expression pattern /// 0055093 // response to hyperoxia // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0071398 // cellular response to fatty acid // inferred from expression pattern 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0004029 // aldehyde dehydrogenase (NAD) activity // inferred from direct assay /// 0004029 // aldehyde dehydrogenase (NAD) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay 1368000_at NM_016994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_016994.1 /DB_XREF=gi:8393023 /GEN=C3 /FEA=FLmRNA /CNT=16 /TID=Rn.11378.1 /TIER=FL+Stack /STK=11 /UG=Rn.11378 /LL=24232 /DEF=Rattus norvegicus Complement component 3 (C3), mRNA. /PROD=complement component 3 /FL=gb:NM_016994.1 NM_016994 complement component 3 C3 24232 NM_016994 0001798 // positive regulation of type IIa hypersensitivity // not recorded /// 0001970 // positive regulation of activation of membrane attack complex // not recorded /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006956 // complement activation // not recorded /// 0006956 // complement activation // traceable author statement /// 0006956 // complement activation // inferred from electronic annotation /// 0006957 // complement activation, alternative pathway // inferred from electronic annotation /// 0006957 // complement activation, alternative pathway // not recorded /// 0006958 // complement activation, classical pathway // traceable author statement /// 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from mutant phenotype /// 0010575 // positive regulation vascular endothelial growth factor production // not recorded /// 0045087 // innate immune response // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0050766 // positive regulation of phagocytosis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation 0004866 // endopeptidase inhibitor activity // inferred from electronic annotation /// 0004943 // C3a anaphylatoxin receptor activity // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0048037 // cofactor binding // inferred from physical interaction 1368001_at NM_012905 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012905.1 /DB_XREF=gi:6978510 /GEN=Apeg1 /FEA=FLmRNA /CNT=16 /TID=Rn.11313.1 /TIER=FL+Stack /STK=11 /UG=Rn.11313 /LL=25381 /DEF=Rattus norvegicus Aortic preferentially expressed gene 1 (Apeg1), mRNA. /PROD=aortic preferentially expressed gene 1 /FL=gb:U57097.1 gb:NM_012905.1 NM_012905 SPEG complex locus Speg 363256 NM_001108802 /// NM_012905 0006468 // protein phosphorylation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042692 // muscle cell differentiation // inferred from expression pattern 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368002_at NM_031058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031058.1 /DB_XREF=gi:13591998 /GEN=Msh2 /FEA=FLmRNA /CNT=15 /TID=Rn.3174.1 /TIER=FL+Stack /STK=11 /UG=Rn.3174 /LL=81709 /DEF=Rattus norvegicus mismatch repair protein (Msh2), mRNA. /PROD=mismatch repair protein 2 /FL=gb:NM_031058.1 NM_031058 mutS homolog 2 (E. coli) Msh2 81709 NM_031058 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0002204 // somatic recombination of immunoglobulin genes involved in immune response // not recorded /// 0002204 // somatic recombination of immunoglobulin genes involved in immune response // inferred from electronic annotation /// 0006119 // oxidative phosphorylation // inferred from electronic annotation /// 0006119 // oxidative phosphorylation // not recorded /// 0006200 // ATP catabolic process // not recorded /// 0006281 // DNA repair // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006298 // mismatch repair // inferred from electronic annotation /// 0006298 // mismatch repair // not recorded /// 0006301 // postreplication repair // not recorded /// 0006301 // postreplication repair // inferred from sequence or structural similarity /// 0006301 // postreplication repair // inferred from electronic annotation /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006302 // double-strand break repair // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0007281 // germ cell development // inferred from electronic annotation /// 0007281 // germ cell development // not recorded /// 0007283 // spermatogenesis // inferred from expression pattern /// 0008340 // determination of adult lifespan // inferred from electronic annotation /// 0008340 // determination of adult lifespan // not recorded /// 0008584 // male gonad development // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0010165 // response to X-ray // inferred from electronic annotation /// 0010165 // response to X-ray // not recorded /// 0010224 // response to UV-B // inferred from electronic annotation /// 0010224 // response to UV-B // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016446 // somatic hypermutation of immunoglobulin genes // inferred from electronic annotation /// 0016446 // somatic hypermutation of immunoglobulin genes // not recorded /// 0016447 // somatic recombination of immunoglobulin gene segments // not recorded /// 0016447 // somatic recombination of immunoglobulin gene segments // inferred from electronic annotation /// 0019724 // B cell mediated immunity // inferred from electronic annotation /// 0019724 // B cell mediated immunity // not recorded /// 0030183 // B cell differentiation // inferred from electronic annotation /// 0030183 // B cell differentiation // not recorded /// 0031573 // intra-S DNA damage checkpoint // inferred from electronic annotation /// 0031573 // intra-S DNA damage checkpoint // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043570 // maintenance of DNA repeat elements // inferred from electronic annotation /// 0043570 // maintenance of DNA repeat elements // not recorded /// 0045190 // isotype switching // inferred from electronic annotation /// 0045190 // isotype switching // not recorded /// 0045910 // negative regulation of DNA recombination // inferred from electronic annotation /// 0045910 // negative regulation of DNA recombination // not recorded /// 0051096 // positive regulation of helicase activity // inferred from electronic annotation /// 0051096 // positive regulation of helicase activity // not recorded 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0032301 // MutSalpha complex // inferred from electronic annotation /// 0032301 // MutSalpha complex // not recorded /// 0032302 // MutSbeta complex // inferred from electronic annotation /// 0032302 // MutSbeta complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0000400 // four-way junction DNA binding // inferred from electronic annotation /// 0000400 // four-way junction DNA binding // not recorded /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // not recorded /// 0003690 // double-stranded DNA binding // not recorded /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0019237 // centromeric DNA binding // inferred from electronic annotation /// 0019237 // centromeric DNA binding // not recorded /// 0019899 // enzyme binding // not recorded /// 0019901 // protein kinase binding // not recorded /// 0030983 // mismatched DNA binding // not recorded /// 0030983 // mismatched DNA binding // inferred from electronic annotation /// 0032137 // guanine/thymine mispair binding // inferred from electronic annotation /// 0032137 // guanine/thymine mispair binding // not recorded /// 0032139 // dinucleotide insertion or deletion binding // not recorded /// 0032139 // dinucleotide insertion or deletion binding // inferred from electronic annotation /// 0032142 // single guanine insertion binding // inferred from electronic annotation /// 0032142 // single guanine insertion binding // not recorded /// 0032143 // single thymine insertion binding // inferred from electronic annotation /// 0032143 // single thymine insertion binding // not recorded /// 0032181 // dinucleotide repeat insertion binding // inferred from electronic annotation /// 0032181 // dinucleotide repeat insertion binding // not recorded /// 0032357 // oxidized purine DNA binding // inferred from electronic annotation /// 0032357 // oxidized purine DNA binding // not recorded /// 0032405 // MutLalpha complex binding // inferred from electronic annotation /// 0032405 // MutLalpha complex binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043531 // ADP binding // inferred from electronic annotation /// 0043531 // ADP binding // not recorded 1368003_at NM_053896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053896.1 /DB_XREF=gi:16758767 /GEN=Aldh1a2 /FEA=FLmRNA /CNT=15 /TID=Rn.10514.1 /TIER=FL+Stack /STK=11 /UG=Rn.10514 /LL=116676 /DEF=Rattus norvegicus aldehyde dehydrogenase family 1, subfamily A2 (Aldh1a2), mRNA. /PROD=aldehyde dehydrogenase family 1, subfamily A2 /FL=gb:U60063.1 gb:NM_053896.1 NM_053896 aldehyde dehydrogenase 1 family, member A2 Aldh1a2 116676 NM_053896 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001822 // kidney development // inferred from expression pattern /// 0001889 // liver development // inferred from expression pattern /// 0001936 // regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001936 // regulation of endothelial cell proliferation // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0007494 // midgut development // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009855 // determination of bilateral symmetry // inferred from electronic annotation /// 0009855 // determination of bilateral symmetry // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009954 // proximal/distal pattern formation // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0014032 // neural crest cell development // inferred from electronic annotation /// 0014032 // neural crest cell development // not recorded /// 0016331 // morphogenesis of embryonic epithelium // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // not recorded /// 0021915 // neural tube development // inferred from electronic annotation /// 0021915 // neural tube development // not recorded /// 0021983 // pituitary gland development // inferred from expression pattern /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0030902 // hindbrain development // inferred from electronic annotation /// 0030902 // hindbrain development // not recorded /// 0031016 // pancreas development // inferred from electronic annotation /// 0031016 // pancreas development // not recorded /// 0031076 // embryonic camera-type eye development // inferred from electronic annotation /// 0031076 // embryonic camera-type eye development // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0033189 // response to vitamin A // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from electronic annotation /// 0034097 // response to cytokine stimulus // not recorded /// 0035115 // embryonic forelimb morphogenesis // inferred from electronic annotation /// 0035115 // embryonic forelimb morphogenesis // not recorded /// 0042573 // retinoic acid metabolic process // inferred from direct assay /// 0042573 // retinoic acid metabolic process // not recorded /// 0042573 // retinoic acid metabolic process // traceable author statement /// 0042573 // retinoic acid metabolic process // inferred from electronic annotation /// 0042574 // retinal metabolic process // inferred from electronic annotation /// 0042574 // retinal metabolic process // not recorded /// 0042904 // 9-cis-retinoic acid biosynthetic process // inferred from electronic annotation /// 0042904 // 9-cis-retinoic acid biosynthetic process // not recorded /// 0043010 // camera-type eye development // not recorded /// 0043010 // camera-type eye development // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0048384 // retinoic acid receptor signaling pathway // inferred from electronic annotation /// 0048384 // retinoic acid receptor signaling pathway // not recorded /// 0048566 // embryonic digestive tract development // inferred from electronic annotation /// 0048566 // embryonic digestive tract development // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060324 // face development // inferred from electronic annotation /// 0060324 // face development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay 0001758 // retinal dehydrogenase activity // inferred from direct assay /// 0001758 // retinal dehydrogenase activity // not recorded /// 0001758 // retinal dehydrogenase activity // inferred from electronic annotation /// 0004028 // 3-chloroallyl aldehyde dehydrogenase activity // inferred from electronic annotation /// 0004028 // 3-chloroallyl aldehyde dehydrogenase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016918 // retinal binding // inferred from direct assay 1368004_at NM_022529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022529.1 /DB_XREF=gi:11968113 /GEN=Mrpl23 /FEA=FLmRNA /CNT=15 /TID=Rn.1608.1 /TIER=FL+Stack /STK=11 /UG=Rn.1608 /LL=64360 /DEF=Rattus norvegicus mitochondrial ribosomal protein L23 (Mrpl23), mRNA. /PROD=ribosomal protein L23-related product homolog /FL=gb:U62635.1 gb:NM_022529.1 NM_022529 mitochondrial ribosomal protein L23 Mrpl23 64360 NM_022529 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005762 // mitochondrial large ribosomal subunit // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation 1368005_at NM_013138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013138.1 /DB_XREF=gi:6981109 /GEN=Itpr3 /FEA=FLmRNA /CNT=14 /TID=Rn.11242.1 /TIER=FL+Stack /STK=11 /UG=Rn.11242 /LL=25679 /DEF=Rattus norvegicus Inositol 1, 4, 5-triphosphate receptor 3 (Itpr3), mRNA. /PROD=inositol 1, 4, 5-triphosphate receptor 3 /FL=gb:NM_013138.1 gb:L06096.1 NM_013138 inositol 1,4,5-triphosphate receptor, type 3 Itpr3 25679 NM_013138 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0007165 // signal transduction // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0050913 // sensory perception of bitter taste // inferred from electronic annotation /// 0050913 // sensory perception of bitter taste // not recorded /// 0050916 // sensory perception of sweet taste // inferred from electronic annotation /// 0050916 // sensory perception of sweet taste // not recorded /// 0050917 // sensory perception of umami taste // inferred from electronic annotation /// 0050917 // sensory perception of umami taste // not recorded /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005640 // nuclear outer membrane // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005903 // brush border // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031095 // platelet dense tubular network membrane // not recorded /// 0043025 // neuronal cell body // inferred from direct assay /// 0043209 // myelin sheath // inferred from direct assay /// 0045177 // apical part of cell // inferred from direct assay 0000822 // inositol hexakisphosphate binding // inferred from direct assay /// 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005220 // inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity // inferred from direct assay /// 0005220 // inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity // not recorded /// 0005220 // inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008095 // inositol-1,4,5-trisphosphate receptor activity // not recorded /// 0008095 // inositol-1,4,5-trisphosphate receptor activity // traceable author statement /// 0008095 // inositol-1,4,5-trisphosphate receptor activity // inferred from electronic annotation /// 0015085 // calcium ion transmembrane transporter activity // traceable author statement /// 0035091 // phosphoinositide binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // not recorded /// 0043533 // inositol 1,3,4,5 tetrakisphosphate binding // inferred from direct assay /// 0070679 // inositol 1,4,5 trisphosphate binding // inferred from electronic annotation /// 0070679 // inositol 1,4,5 trisphosphate binding // not recorded 1368006_at NM_053538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053538.1 /DB_XREF=gi:16758303 /GEN=Laptm5 /FEA=FLmRNA /CNT=14 /TID=Rn.24799.1 /TIER=FL+Stack /STK=11 /UG=Rn.24799 /LL=89783 /DEF=Rattus norvegicus lysosomal-associated protein transmembrane 5 (Laptm5), mRNA. /PROD=lysosomal-associated protein transmembrane 5 /FL=gb:NM_053538.1 gb:AB046592.1 NM_053538 lysosomal protein transmembrane 5 Laptm5 89783 NM_053538 0006810 // transport // inferred from electronic annotation 0005764 // lysosome // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1368007_at NM_022849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022849.1 /DB_XREF=gi:12408295 /GEN=Crpd /FEA=FLmRNA /CNT=13 /TID=Rn.10107.1 /TIER=FL+Stack /STK=11 /UG=Rn.10107 /LL=29164 /DEF=Rattus norvegicus crp-ductin (Crpd), mRNA. /PROD=crp-ductin /FL=gb:NM_022849.1 gb:U32681.1 NM_022849 deleted in malignant brain tumors 1 Dmbt1 170568 NM_022849 /// XM_001080554 /// XM_002728779 0001824 // blastocyst development // inferred from electronic annotation /// 0001824 // blastocyst development // not recorded /// 0001833 // inner cell mass cell proliferation // inferred from electronic annotation /// 0001833 // inner cell mass cell proliferation // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009611 // response to wounding // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0015031 // protein transport // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from expression pattern /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030858 // positive regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030858 // positive regulation of epithelial cell differentiation // not recorded /// 0042246 // tissue regeneration // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019898 // extrinsic to membrane // not recorded /// 0019898 // extrinsic to membrane // inferred from sequence or structural similarity /// 0019898 // extrinsic to membrane // inferred from electronic annotation /// 0030658 // transport vesicle membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // not recorded /// 0031012 // extracellular matrix // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042589 // zymogen granule membrane // not recorded /// 0042589 // zymogen granule membrane // inferred from sequence or structural similarity /// 0042589 // zymogen granule membrane // inferred from electronic annotation 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035375 // zymogen binding // not recorded /// 0035375 // zymogen binding // inferred from sequence or structural similarity /// 0035375 // zymogen binding // inferred from electronic annotation /// 0051636 // Gram-negative bacterial cell surface binding // not recorded /// 0051636 // Gram-negative bacterial cell surface binding // inferred from sequence or structural similarity /// 0051636 // Gram-negative bacterial cell surface binding // inferred from electronic annotation /// 0051637 // Gram-positive bacterial cell surface binding // not recorded /// 0051637 // Gram-positive bacterial cell surface binding // inferred from sequence or structural similarity /// 0051637 // Gram-positive bacterial cell surface binding // inferred from electronic annotation 1368008_at NM_021751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021751.1 /DB_XREF=gi:11120697 /GEN=LOC60357 /FEA=FLmRNA /CNT=13 /TID=Rn.43387.1 /TIER=FL+Stack /STK=11 /UG=Rn.43387 /LL=60357 /DEF=Rattus norvegicus fudenine (LOC60357), mRNA. /PROD=fudenine /FL=gb:AF386758.1 gb:NM_021751.1 gb:AF263368.1 NM_021751 prominin 1 Prom1 60357 NM_001110137 /// NM_021751 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005902 // microvillus // not recorded /// 0005902 // microvillus // inferred from electronic annotation /// 0005903 // brush border // not recorded /// 0005903 // brush border // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0032420 // stereocilium // not recorded /// 0032420 // stereocilium // inferred from electronic annotation /// 0042995 // cell projection // not recorded /// 0042995 // cell projection // inferred from electronic annotation 1368009_at NM_053765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053765.1 /DB_XREF=gi:16758601 /GEN=Uae1 /FEA=FLmRNA /CNT=13 /TID=Rn.18753.1 /TIER=FL+Stack /STK=11 /UG=Rn.18753 /LL=114711 /DEF=Rattus norvegicus UDP-N-acetylglucosamine-2-epimeraseN-acetylmannosamine kinase (Uae1), mRNA. /PROD=UDP-N-acetylglucosamine-2-epimeraseN-acetylmannosamine kinase /FL=gb:NM_053765.1 NM_053765 glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase Gne 114711 NM_053765 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006047 // UDP-N-acetylglucosamine metabolic process // inferred from electronic annotation /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation /// 0046380 // N-acetylneuraminate biosynthetic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008761 // UDP-N-acetylglucosamine 2-epimerase activity // inferred from direct assay /// 0008761 // UDP-N-acetylglucosamine 2-epimerase activity // inferred from electronic annotation /// 0009384 // N-acylmannosamine kinase activity // inferred from direct assay /// 0009384 // N-acylmannosamine kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1368010_at NM_053908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053908.1 /DB_XREF=gi:16758787 /GEN=Ptph6 /FEA=FLmRNA /CNT=13 /TID=Rn.18985.1 /TIER=FL+Stack /STK=11 /UG=Rn.18985 /LL=116689 /DEF=Rattus norvegicus protein tyrosine phosphatase, non-receptor type 6 (Ptph6), mRNA. /PROD=protein tyrosine phosphatase, non-receptor type6 /FL=gb:NM_053908.1 gb:U77038.1 NM_053908 protein tyrosine phosphatase, non-receptor type 6 Ptpn6 116689 NM_053908 0002924 // negative regulation of humoral immune response mediated by circulating immunoglobulin // inferred from electronic annotation /// 0002924 // negative regulation of humoral immune response mediated by circulating immunoglobulin // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0006470 // protein dephosphorylation // traceable author statement /// 0009611 // response to wounding // inferred from expression pattern /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // not recorded /// 0042130 // negative regulation of T cell proliferation // inferred from electronic annotation /// 0042130 // negative regulation of T cell proliferation // not recorded /// 0042267 // natural killer cell mediated cytotoxicity // inferred from electronic annotation /// 0042267 // natural killer cell mediated cytotoxicity // not recorded /// 0043407 // negative regulation of MAP kinase activity // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // not recorded /// 0043409 // negative regulation of MAPKKK cascade // inferred from electronic annotation /// 0043409 // negative regulation of MAPKKK cascade // not recorded /// 0045577 // regulation of B cell differentiation // inferred from electronic annotation /// 0045577 // regulation of B cell differentiation // not recorded /// 0050732 // negative regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050732 // negative regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050853 // B cell receptor signaling pathway // inferred from electronic annotation /// 0050853 // B cell receptor signaling pathway // not recorded /// 0050860 // negative regulation of T cell receptor signaling pathway // inferred from electronic annotation /// 0050860 // negative regulation of T cell receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0042105 // alpha-beta T cell receptor complex // inferred from electronic annotation /// 0042105 // alpha-beta T cell receptor complex // not recorded 0001784 // phosphotyrosine binding // inferred from electronic annotation /// 0001784 // phosphotyrosine binding // not recorded /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded /// 0042169 // SH2 domain binding // inferred from electronic annotation /// 0042169 // SH2 domain binding // not recorded /// 0046703 // natural killer cell lectin-like receptor binding // inferred from physical interaction 1368011_at NM_024153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024153.1 /DB_XREF=gi:13162346 /GEN=Fdxr /FEA=FLmRNA /CNT=13 /TID=Rn.10860.1 /TIER=FL+Stack /STK=11 /UG=Rn.10860 /LL=79122 /DEF=Rattus norvegicus adrenodoxin reductase (Fdxr), mRNA. /PROD=adrenodoxin reductase /FL=gb:NM_024153.1 gb:D63761.1 NM_024153 ferredoxin reductase Fdxr 79122 NM_024153 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004324 // ferredoxin-NADP+ reductase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0015039 // NADPH-adrenodoxin reductase activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0070402 // NADPH binding // inferred from direct assay 1368012_at NM_022591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022591.1 /DB_XREF=gi:12018249 /GEN=Tlp1 /FEA=FLmRNA /CNT=12 /TID=Rn.5890.1 /TIER=FL+Stack /STK=11 /UG=Rn.5890 /LL=64523 /DEF=Rattus norvegicus telomerase protein component 1 (Tlp1), mRNA. /PROD=telomerase protein component 1 /FL=gb:NM_022591.1 gb:U89282.1 NM_022591 telomerase associated protein 1 Tep1 64523 NM_022591 0000722 // telomere maintenance via recombination // inferred from electronic annotation /// 0000722 // telomere maintenance via recombination // not recorded /// 0007004 // telomere maintenance via telomerase // not recorded 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005697 // telomerase holoenzyme complex // inferred from electronic annotation /// 0005697 // telomerase holoenzyme complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003720 // telomerase activity // inferred from electronic annotation /// 0003720 // telomerase activity // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1368013_at NM_080399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080399.1 /DB_XREF=gi:17939351 /GEN=Smhs1 /FEA=FLmRNA /CNT=12 /TID=Rn.19672.1 /TIER=FL+Stack /STK=11 /UG=Rn.19672 /LL=140582 /DEF=Rattus norvegicus Smhs1 protein (Smhs1), mRNA. /PROD=Smhs1 protein /FL=gb:NM_080399.1 gb:AF327511.1 NM_080399 DNA-damage-inducible transcript 4-like /// DNA-damage-inducible transcript 4-like protein-like Ddit4l /// LOC100364537 100364537 /// 140582 NM_080399 /// XM_002726043 0009968 // negative regulation of signal transduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 1368014_at AB048730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB048730.1 /DB_XREF=gi:12060419 /GEN=iPGES /FEA=FLmRNA /CNT=20 /TID=Rn.7730.1 /TIER=FL+Stack /STK=11 /UG=Rn.7730 /LL=59103 /DEF=Rattus norvegicus iPGES mRNA for inducible prostaglandin E synthase, complete cds. /PROD=inducible prostaglandin E synthase /FL=gb:AB035145.1 gb:AB041998.1 gb:AF280967.1 gb:NM_021583.1 gb:AB048730.1 AB048730 prostaglandin E synthase Ptges 59103 NM_021583 0001516 // prostaglandin biosynthetic process // inferred from direct assay /// 0001516 // prostaglandin biosynthetic process // traceable author statement /// 0002526 // acute inflammatory response // inferred from expression pattern /// 0002544 // chronic inflammatory response // inferred from expression pattern /// 0006693 // prostaglandin metabolic process // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from expression pattern 0005634 // nucleus // not recorded /// 0005641 // nuclear envelope lumen // not recorded /// 0005737 // cytoplasm // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0050220 // prostaglandin-E synthase activity // inferred from direct assay 1368015_at AF280967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF280967.1 /DB_XREF=gi:10946224 /FEA=FLmRNA /CNT=20 /TID=Rn.7730.1 /TIER=FL /STK=2 /UG=Rn.7730 /LL=59103 /UG_GENE=Ptges /DEF=Rattus norvegicus PGE synthase mRNA, complete cds. /PROD=PGE synthase /FL=gb:AB035145.1 gb:AB041998.1 gb:AF280967.1 gb:NM_021583.1 gb:AB048730.1 AF280967 prostaglandin E synthase Ptges 59103 NM_021583 0001516 // prostaglandin biosynthetic process // inferred from direct assay /// 0001516 // prostaglandin biosynthetic process // traceable author statement /// 0002526 // acute inflammatory response // inferred from expression pattern /// 0002544 // chronic inflammatory response // inferred from expression pattern /// 0006693 // prostaglandin metabolic process // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from expression pattern 0005634 // nucleus // not recorded /// 0005641 // nuclear envelope lumen // not recorded /// 0005737 // cytoplasm // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0050220 // prostaglandin-E synthase activity // inferred from direct assay 1368016_at NM_133299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133299.1 /DB_XREF=gi:18959235 /GEN=Pecr /FEA=FLmRNA /CNT=17 /TID=Rn.19267.1 /TIER=FL+Stack /STK=11 /UG=Rn.19267 /LL=113956 /DEF=Rattus norvegicus perosisomal 2-enoyl-CoA reductase (Pecr), mRNA. /PROD=perosisomal 2-enoyl-CoA reductase /FL=gb:AF021854.1 gb:NM_133299.1 gb:AF099742.1 NM_133299 peroxisomal trans-2-enoyl-CoA reductase Pecr 113956 NM_133299 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0019166 // trans-2-enoyl-CoA reductase (NADPH) activity // inferred from electronic annotation 1368017_at NM_022582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022582.1 /DB_XREF=gi:12018231 /GEN=Lgals7 /FEA=FLmRNA /CNT=16 /TID=Rn.6336.1 /TIER=FL+Stack /STK=11 /UG=Rn.6336 /LL=29518 /DEF=Rattus norvegicus lectin, galactose binding, soluble 7 (Lgals7), mRNA. /PROD=lectin, galactose binding, soluble 7 /FL=gb:AF036941.1 gb:U67883.1 gb:NM_022582.1 NM_022582 lectin, galactoside-binding, soluble, 7 Lgals7 29518 NM_022582 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // traceable author statement /// 0008283 // cell proliferation // traceable author statement /// 0030154 // cell differentiation // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005529 // sugar binding // inferred from electronic annotation 1368018_at NM_031359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031359.1 /DB_XREF=gi:13786209 /GEN=Mkln1 /FEA=FLmRNA /CNT=15 /TID=Rn.6383.1 /TIER=FL+Stack /STK=11 /UG=Rn.6383 /LL=83536 /DEF=Rattus norvegicus muskelin (Mkln1), mRNA. /PROD=muskelin /FL=gb:NM_031359.1 gb:AB046442.1 NM_031359 muskelin 1, intracellular mediator containing kelch motifs Mkln1 83536 NM_031359 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368019_at NM_019906 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019906.1 /DB_XREF=gi:9845250 /GEN=Frap1 /FEA=FLmRNA /CNT=14 /TID=Rn.11008.1 /TIER=FL+Stack /STK=11 /UG=Rn.11008 /LL=56718 /DEF=Rattus norvegicus rapamycin and FKBP12 target-1 protein (Frap1), mRNA. /PROD=rapamycin and FKBP12 target-1 protein /FL=gb:NM_019906.1 gb:L37085.1 gb:U11681.1 NM_019906 mechanistic target of rapamycin (serine/threonine kinase) Mtor 56718 NM_019906 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0005979 // regulation of glycogen biosynthetic process // inferred from direct assay /// 0005979 // regulation of glycogen biosynthetic process // inferred from mutant phenotype /// 0006109 // regulation of carbohydrate metabolic process // inferred from direct assay /// 0006109 // regulation of carbohydrate metabolic process // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007281 // germ cell development // inferred from electronic annotation /// 0007281 // germ cell development // not recorded /// 0010592 // positive regulation of lamellipodium assembly // inferred from electronic annotation /// 0010592 // positive regulation of lamellipodium assembly // not recorded /// 0016242 // negative regulation of macroautophagy // inferred from electronic annotation /// 0016242 // negative regulation of macroautophagy // not recorded /// 0016310 // phosphorylation // not recorded /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0018107 // peptidyl-threonine phosphorylation // inferred from electronic annotation /// 0018107 // peptidyl-threonine phosphorylation // not recorded /// 0030030 // cell projection organization // inferred from genetic interaction /// 0030030 // cell projection organization // not recorded /// 0030030 // cell projection organization // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // not recorded /// 0031529 // ruffle organization // inferred from electronic annotation /// 0031529 // ruffle organization // not recorded /// 0031929 // TOR signaling cascade // inferred from electronic annotation /// 0031929 // TOR signaling cascade // not recorded /// 0031998 // regulation of fatty acid beta-oxidation // inferred from direct assay /// 0031998 // regulation of fatty acid beta-oxidation // inferred from mutant phenotype /// 0032095 // regulation of response to food // inferred from direct assay /// 0032095 // regulation of response to food // inferred from mutant phenotype /// 0032314 // regulation of Rac GTPase activity // inferred from electronic annotation /// 0032314 // regulation of Rac GTPase activity // not recorded /// 0032868 // response to insulin stimulus // inferred from electronic annotation /// 0032868 // response to insulin stimulus // not recorded /// 0032956 // regulation of actin cytoskeleton organization // inferred from electronic annotation /// 0032956 // regulation of actin cytoskeleton organization // not recorded /// 0043200 // response to amino acid stimulus // inferred from electronic annotation /// 0043200 // response to amino acid stimulus // not recorded /// 0043610 // regulation of carbohydrate utilization // inferred from direct assay /// 0043610 // regulation of carbohydrate utilization // inferred from mutant phenotype /// 0045727 // positive regulation of translation // inferred from mutant phenotype /// 0045792 // negative regulation of cell size // inferred from mutant phenotype /// 0045792 // negative regulation of cell size // not recorded /// 0045792 // negative regulation of cell size // inferred from electronic annotation /// 0045859 // regulation of protein kinase activity // inferred from electronic annotation /// 0045859 // regulation of protein kinase activity // not recorded /// 0046777 // protein autophosphorylation // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0051496 // positive regulation of stress fiber assembly // inferred from electronic annotation /// 0051496 // positive regulation of stress fiber assembly // not recorded /// 0051897 // positive regulation of protein kinase B signaling cascade // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0012505 // endomembrane system // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0030425 // dendrite // inferred from direct assay /// 0031931 // TORC1 complex // inferred from mutant phenotype /// 0031931 // TORC1 complex // not recorded /// 0031931 // TORC1 complex // inferred from electronic annotation /// 0031932 // TORC2 complex // inferred from mutant phenotype /// 0031932 // TORC2 complex // not recorded /// 0031932 // TORC2 complex // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0070438 // mTOR-FKBP12-rapamycin complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from mutant phenotype /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0051219 // phosphoprotein binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // not recorded 1368020_at NM_031062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031062.1 /DB_XREF=gi:13592004 /GEN=Mvd /FEA=FLmRNA /CNT=13 /TID=Rn.10288.1 /TIER=FL+Stack /STK=11 /UG=Rn.10288 /LL=81726 /DEF=Rattus norvegicus mevalonate pyrophosphate decarboxylase (Mvd), mRNA. /PROD=mevalonate pyrophosphate decarboxylase /FL=gb:NM_031062.1 gb:U53706.1 NM_031062 mevalonate (diphospho) decarboxylase Mvd 81726 NM_031062 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // non-traceable author statement /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008299 // isoprenoid biosynthetic process // not recorded /// 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019287 // isopentenyl diphosphate biosynthetic process, mevalonate pathway // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // not recorded /// 0005782 // peroxisomal matrix // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004163 // diphosphomevalonate decarboxylase activity // inferred from direct assay /// 0004163 // diphosphomevalonate decarboxylase activity // not recorded /// 0004163 // diphosphomevalonate decarboxylase activity // traceable author statement /// 0004163 // diphosphomevalonate decarboxylase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // not recorded /// 0030544 // Hsp70 protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation 1368021_at NM_130780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130780.1 /DB_XREF=gi:18640731 /GEN=Adh1a /FEA=FLmRNA /CNT=13 /TID=Rn.756.1 /TIER=FL+Stack /STK=11 /UG=Rn.756 /LL=24172 /DEF=Rattus norvegicus Alcohol dehydrogenase (class I), alpha polypeptide (Adh1a), mRNA. /PROD=alcohol dehydrogenase (class I), alphapolypeptide /FL=gb:NM_130780.1 gb:NM_019286.1 gb:M15327.1 NM_130780 alcohol dehydrogenase 1 (class I) Adh1 24172 NM_019286 0001523 // retinoid metabolic process // not recorded /// 0001523 // retinoid metabolic process // inferred from electronic annotation /// 0006068 // ethanol catabolic process // inferred from electronic annotation /// 0006068 // ethanol catabolic process // not recorded /// 0006069 // ethanol oxidation // inferred from direct assay /// 0006069 // ethanol oxidation // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009790 // embryo development // inferred from expression pattern /// 0031100 // organ regeneration // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032526 // response to retinoic acid // not recorded /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0033574 // response to testosterone stimulus // inferred from electronic annotation /// 0033574 // response to testosterone stimulus // not recorded /// 0042572 // retinol metabolic process // inferred from electronic annotation /// 0042572 // retinol metabolic process // not recorded /// 0042573 // retinoic acid metabolic process // inferred from electronic annotation /// 0042573 // retinoic acid metabolic process // not recorded /// 0046186 // acetaldehyde biosynthetic process // inferred from direct assay /// 0048149 // behavioral response to ethanol // inferred from electronic annotation /// 0048149 // behavioral response to ethanol // not recorded /// 0048545 // response to steroid hormone stimulus // not recorded /// 0048545 // response to steroid hormone stimulus // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004022 // alcohol dehydrogenase (NAD) activity // inferred from direct assay /// 0004022 // alcohol dehydrogenase (NAD) activity // not recorded /// 0004022 // alcohol dehydrogenase (NAD) activity // traceable author statement /// 0004022 // alcohol dehydrogenase (NAD) activity // inferred from electronic annotation /// 0004745 // retinol dehydrogenase activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0035276 // ethanol binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from direct assay 1368022_at NM_022944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022944.1 /DB_XREF=gi:12621111 /GEN=Inppl1 /FEA=FLmRNA /CNT=12 /TID=Rn.42902.1 /TIER=FL+Stack /STK=11 /UG=Rn.42902 /LL=65038 /DEF=Rattus norvegicus SH2-containing inositol phosphatase 2 (Inppl1), mRNA. /PROD=SH2-containing inositol phosphatase 2 /FL=gb:NM_022944.1 gb:AB025794.1 NM_022944 inositol polyphosphate phosphatase-like 1 Inppl1 65038 NM_022944 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006897 // endocytosis // inferred from electronic annotation /// 0006897 // endocytosis // not recorded /// 0007015 // actin filament organization // inferred from electronic annotation /// 0007015 // actin filament organization // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0008156 // negative regulation of DNA replication // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // not recorded /// 0010642 // negative regulation of platelet-derived growth factor receptor signaling pathway // inferred from mutant phenotype /// 0010977 // negative regulation of neuron projection development // inferred from mutant phenotype /// 0032868 // response to insulin stimulus // inferred from electronic annotation /// 0032868 // response to insulin stimulus // not recorded /// 0032957 // inositol trisphosphate metabolic process // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0043407 // negative regulation of MAP kinase activity // inferred from mutant phenotype /// 0043569 // negative regulation of insulin-like growth factor receptor signaling pathway // inferred from mutant phenotype /// 0044255 // cellular lipid metabolic process // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // not recorded /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from direct assay /// 0030479 // actin cortical patch // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0004445 // inositol-polyphosphate 5-phosphatase activity // inferred from direct assay /// 0004445 // inositol-polyphosphate 5-phosphatase activity // traceable author statement /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0042169 // SH2 domain binding // inferred from electronic annotation /// 0042169 // SH2 domain binding // not recorded 1368023_at NM_053431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053431.1 /DB_XREF=gi:16758171 /GEN=Qscn6 /FEA=FLmRNA /CNT=12 /TID=Rn.44920.1 /TIER=FL+Stack /STK=11 /UG=Rn.44920 /LL=84491 /DEF=Rattus norvegicus quiescin Q6 (Qscn6), mRNA. /PROD=quiescin Q6 /FL=gb:AF285078.1 gb:NM_053431.1 gb:AB044285.1 NM_053431 quiescin Q6 sulfhydryl oxidase 1 Qsox1 84491 NM_001109898 /// NM_053431 0006467 // protein thiol-disulfide exchange // not recorded /// 0006467 // protein thiol-disulfide exchange // inferred from sequence or structural similarity /// 0006467 // protein thiol-disulfide exchange // inferred from electronic annotation /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // not recorded /// 0030173 // integral to Golgi membrane // inferred from sequence or structural similarity /// 0030173 // integral to Golgi membrane // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016971 // flavin-linked sulfhydryl oxidase activity // not recorded /// 0016971 // flavin-linked sulfhydryl oxidase activity // inferred from sequence or structural similarity /// 0016971 // flavin-linked sulfhydryl oxidase activity // inferred from electronic annotation /// 0016972 // thiol oxidase activity // inferred from electronic annotation 1368024_at AB044285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB044285.1 /DB_XREF=gi:12718819 /GEN=SOx /FEA=FLmRNA /CNT=12 /TID=Rn.44920.1 /TIER=FL /STK=1 /UG=Rn.44920 /LL=84491 /DEF=Rattus norvegicus SOx mRNA for sulfhydryl oxidase, complete cds. /PROD=sulfhydryl oxidase /FL=gb:AF285078.1 gb:NM_053431.1 gb:AB044285.1 AB044285 quiescin Q6 sulfhydryl oxidase 1 Qsox1 84491 NM_001109898 /// NM_053431 0006467 // protein thiol-disulfide exchange // not recorded /// 0006467 // protein thiol-disulfide exchange // inferred from sequence or structural similarity /// 0006467 // protein thiol-disulfide exchange // inferred from electronic annotation /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // not recorded /// 0030173 // integral to Golgi membrane // inferred from sequence or structural similarity /// 0030173 // integral to Golgi membrane // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016971 // flavin-linked sulfhydryl oxidase activity // not recorded /// 0016971 // flavin-linked sulfhydryl oxidase activity // inferred from sequence or structural similarity /// 0016971 // flavin-linked sulfhydryl oxidase activity // inferred from electronic annotation /// 0016972 // thiol oxidase activity // inferred from electronic annotation 1368025_at NM_080906 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080906.1 /DB_XREF=gi:18376838 /GEN=Rtp801 /FEA=FLmRNA /CNT=12 /TID=Rn.9775.1 /TIER=FL+Stack /STK=11 /UG=Rn.9775 /DEF=Rattus norvegicus HIF-1 responsive RTP801 (Rtp801), mRNA. /PROD=HIF-1 responsive RTP801 /FL=gb:NM_080906.1 gb:AF334162.1 NM_080906 DNA-damage-inducible transcript 4 Ddit4 140942 NM_080906 0001666 // response to hypoxia // inferred from direct assay /// 0006915 // apoptosis // inferred from direct assay /// 0006915 // apoptosis // inferred from electronic annotation /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 1368026_at NM_133548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133548.1 /DB_XREF=gi:19424217 /GEN=Hdgfrp2 /FEA=FLmRNA /CNT=11 /TID=Rn.22143.1 /TIER=FL+Stack /STK=11 /UG=Rn.22143 /LL=171073 /DEF=Rattus norvegicus hepatoma-derived growth factor, related protein 2 (Hdgfrp2), mRNA. /PROD=hepatoma-derived growth factor, related protein2 /FL=gb:AF355102.1 gb:NM_133548.1 NM_133548 hepatoma-derived growth factor, related protein 2 Hdgfrp2 171073 NM_133548 0006354 // RNA elongation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368027_at NM_012687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012687.1 /DB_XREF=gi:6981633 /GEN=Tbxas1 /FEA=FLmRNA /CNT=11 /TID=Rn.16283.1 /TIER=FL+Stack /STK=11 /UG=Rn.16283 /LL=24886 /DEF=Rattus norvegicus ThromboxA ane synthase 1 (Tbxas1), mRNA. /PROD=thromboxA ane synthase 1 /FL=gb:D28773.1 gb:NM_012687.1 gb:D31798.1 NM_012687 thromboxane A synthase 1, platelet Tbxas1 24886 NM_012687 0001516 // prostaglandin biosynthetic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0030644 // cellular chloride ion homeostasis // inferred from mutant phenotype /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004796 // thromboxane-A synthase activity // inferred from electronic annotation /// 0004796 // thromboxane-A synthase activity // not recorded /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368028_at NM_012633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012633.1 /DB_XREF=gi:6981415 /GEN=Prph /FEA=FLmRNA /CNT=34 /TID=Rn.11086.1 /TIER=FL+Stack /STK=10 /UG=Rn.11086 /LL=24688 /DEF=Rattus norvegicus Peripherin (Prph), mRNA. /PROD=peripherin /FL=gb:AF031878.1 gb:NM_012633.1 NM_012633 peripherin Prph 24688 NM_012633 0045104 // intermediate filament cytoskeleton organization // inferred from mutant phenotype /// 0045104 // intermediate filament cytoskeleton organization // not recorded /// 0045104 // intermediate filament cytoskeleton organization // inferred from electronic annotation 0005882 // intermediate filament // not recorded /// 0005882 // intermediate filament // inferred from electronic annotation /// 0005883 // neurofilament // inferred from electronic annotation /// 0005883 // neurofilament // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0043025 // neuronal cell body // inferred from direct assay /// 0044299 // C-fiber // not recorded /// 0045098 // type III intermediate filament // inferred from direct assay 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368029_at NM_013106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013106.1 /DB_XREF=gi:6980963 /GEN=Gnai3 /FEA=FLmRNA /CNT=29 /TID=Rn.4368.1 /TIER=FL+Stack /STK=10 /UG=Rn.4368 /LL=25643 /DEF=Rattus norvegicus Guanine nucleotide binding, protein, alpha inhibiting polypeptide 3 (Gnai3), mRNA. /PROD=guanine nucleotide binding, protein, alphainhibiting polypeptide 3 /FL=gb:M20713.1 gb:J03219.1 gb:NM_013106.1 NM_013106 guanine nucleotide binding protein (G protein), alpha inhibiting 3 Gnai3 25643 NM_013106 0006906 // vesicle fusion // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0008016 // regulation of heart contraction // not recorded /// 0050805 // negative regulation of synaptic transmission // inferred from mutant phenotype /// 0051048 // negative regulation of secretion // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005834 // heterotrimeric G-protein complex // traceable author statement /// 0005886 // plasma membrane // not recorded /// 0042588 // zymogen granule // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031821 // metabotropic serotonin receptor binding // inferred from physical interaction 1368030_at J03219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J03219.1 /DB_XREF=gi:204320 /FEA=FLmRNA /CNT=29 /TID=Rn.4368.1 /TIER=FL /STK=1 /UG=Rn.4368 /LL=25643 /UG_GENE=Gnai3 /UG_TITLE=Guanine nucleotide binding, protein, alpha inhibiting polypeptide 3 /DEF=Rat Gi3 protein alpha subunit mRNA, complete cds. /FL=gb:M20713.1 gb:J03219.1 gb:NM_013106.1 J03219 guanine nucleotide binding protein (G protein), alpha inhibiting 3 Gnai3 25643 NM_013106 0006906 // vesicle fusion // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0008016 // regulation of heart contraction // not recorded /// 0050805 // negative regulation of synaptic transmission // inferred from mutant phenotype /// 0051048 // negative regulation of secretion // traceable author statement 0000139 // Golgi membrane // traceable author statement /// 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005834 // heterotrimeric G-protein complex // traceable author statement /// 0005886 // plasma membrane // not recorded /// 0042588 // zymogen granule // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031821 // metabotropic serotonin receptor binding // inferred from physical interaction 1368031_at NM_022869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022869.1 /DB_XREF=gi:12408333 /GEN=Nopp140 /FEA=FLmRNA /CNT=46 /TID=Rn.9517.1 /TIER=FL+Stack /STK=10 /UG=Rn.9517 /LL=64896 /DEF=Rattus norvegicus nucleolar phosphoprotein p130 (Nopp140), mRNA. /PROD=nucleolar phosphoprotein p130 /FL=gb:M94288.1 gb:NM_022869.1 gb:M94287.1 NM_022869 nucleolar and coiled-body phosphoprotein 1 Nolc1 64896 NM_022869 0006970 // response to osmotic stress // inferred from expression pattern /// 0007000 // nucleolus organization // inferred from electronic annotation /// 0007000 // nucleolus organization // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from genetic interaction /// 0033979 // box H/ACA snoRNA metabolic process // inferred from genetic interaction /// 0042306 // regulation of protein import into nucleus // inferred from direct assay /// 0045941 // positive regulation of transcription // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0015030 // Cajal body // inferred from electronic annotation /// 0015030 // Cajal body // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008139 // nuclear localization sequence binding // inferred from direct assay /// 0034512 // box C/D snoRNA binding // inferred from direct assay /// 0034513 // box H/ACA snoRNA binding // inferred from direct assay 1368032_at M94288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M94288.1 /DB_XREF=gi:205751 /FEA=FLmRNA /CNT=46 /TID=Rn.9517.1 /TIER=FL /STK=3 /UG=Rn.9517 /LL=64896 /UG_GENE=Nopp140 /DEF=Rattus norvegicus nucleolar phosphoprotein of 140kD, Nopp140 mRNA, complete cds. /PROD=Nopp140 /FL=gb:M94288.1 gb:NM_022869.1 gb:M94287.1 M94288 nucleolar and coiled-body phosphoprotein 1 Nolc1 64896 NM_022869 0006970 // response to osmotic stress // inferred from expression pattern /// 0007000 // nucleolus organization // inferred from electronic annotation /// 0007000 // nucleolus organization // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from genetic interaction /// 0033979 // box H/ACA snoRNA metabolic process // inferred from genetic interaction /// 0042306 // regulation of protein import into nucleus // inferred from direct assay /// 0045941 // positive regulation of transcription // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0015030 // Cajal body // inferred from electronic annotation /// 0015030 // Cajal body // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008139 // nuclear localization sequence binding // inferred from direct assay /// 0034512 // box C/D snoRNA binding // inferred from direct assay /// 0034513 // box H/ACA snoRNA binding // inferred from direct assay 1368033_at BI290791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290791 /DB_XREF=gi:14949700 /DB_XREF=UI-R-DK0-cga-d-09-0-UI.s1 /CLONE=UI-R-DK0-cga-d-09-0-UI /FEA=FLmRNA /CNT=46 /TID=Rn.9517.1 /TIER=Stack /STK=13 /UG=Rn.9517 /LL=64896 /UG_GENE=Nopp140 /UG_TITLE=nucleolar phosphoprotein p130 /FL=gb:M94288.1 gb:NM_022869.1 gb:M94287.1 BI290791 nucleolar and coiled-body phosphoprotein 1 Nolc1 64896 NM_022869 0006970 // response to osmotic stress // inferred from expression pattern /// 0007000 // nucleolus organization // inferred from electronic annotation /// 0007000 // nucleolus organization // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from genetic interaction /// 0033979 // box H/ACA snoRNA metabolic process // inferred from genetic interaction /// 0042306 // regulation of protein import into nucleus // inferred from direct assay /// 0045941 // positive regulation of transcription // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0015030 // Cajal body // inferred from electronic annotation /// 0015030 // Cajal body // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008139 // nuclear localization sequence binding // inferred from direct assay /// 0034512 // box C/D snoRNA binding // inferred from direct assay /// 0034513 // box H/ACA snoRNA binding // inferred from direct assay 1368034_at NM_012526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012526.1 /DB_XREF=gi:6978646 /GEN=Chgb /FEA=FLmRNA /CNT=67 /TID=Rn.11090.1 /TIER=FL+Stack /STK=10 /UG=Rn.11090 /LL=24259 /DEF=Rattus norvegicus Chromogranin B, parathyroid secretory protein (Chgb), mRNA. /PROD=chromogranin B, parathyroid secretory protein /FL=gb:AF019974.1 gb:NM_012526.1 NM_012526 chromogranin B Chgb 24259 NM_012526 0005576 // extracellular region // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368035_a_at X83505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X83505.1 /DB_XREF=gi:732918 /FEA=mRNA /CNT=1 /TID=Rn.11386.2 /TIER=ConsEnd /STK=0 /UG=Rn.11386 /LL=29615 /UG_GENE=Ptprf /DEF=R.norvegicus mRNA for leucocyte common antigen-related protein (4685 bp). /PROD=leucocyte common antigen-related protein (LAR) X83505 protein tyrosine phosphatase, receptor type, F Ptprf 360406 NM_019249 0001960 // negative regulation of cytokine-mediated signaling pathway // inferred from mutant phenotype /// 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from direct assay /// 0007399 // nervous system development // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0031345 // negative regulation of cell projection organization // inferred from mutant phenotype /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // inferred from direct assay /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from mutant phenotype /// 0050775 // positive regulation of dendrite morphogenesis // inferred from mutant phenotype /// 0050803 // regulation of synapse structure and activity // inferred from mutant phenotype /// 0051387 // negative regulation of nerve growth factor receptor signaling pathway // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030426 // growth cone // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0060076 // excitatory synapse // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // inferred from sequence or structural similarity /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005001 // transmembrane receptor protein tyrosine phosphatase activity // inferred from direct assay /// 0005158 // insulin receptor binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0030971 // receptor tyrosine kinase binding // inferred from physical interaction /// 0042301 // phosphate binding // inferred from direct assay 1368036_at M60103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M60103.1 /DB_XREF=gi:205130 /FEA=FLmRNA /CNT=35 /TID=Rn.11386.1 /TIER=Stack /STK=15 /UG=Rn.11386 /LL=29615 /UG_GENE=Ptprf /DEF=Rattus norvegicus leukocyte common antigen related protein mRNA, 3 end. /PROD=leukocyte common antigen related protein /FL=gb:L11586.1 gb:U00477.1 gb:NM_019249.1 M60103 protein tyrosine phosphatase, receptor type, F Ptprf 360406 NM_019249 0001960 // negative regulation of cytokine-mediated signaling pathway // inferred from mutant phenotype /// 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from direct assay /// 0007399 // nervous system development // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0031345 // negative regulation of cell projection organization // inferred from mutant phenotype /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // inferred from direct assay /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from mutant phenotype /// 0050775 // positive regulation of dendrite morphogenesis // inferred from mutant phenotype /// 0050803 // regulation of synapse structure and activity // inferred from mutant phenotype /// 0051387 // negative regulation of nerve growth factor receptor signaling pathway // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030426 // growth cone // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0060076 // excitatory synapse // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // inferred from sequence or structural similarity /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005001 // transmembrane receptor protein tyrosine phosphatase activity // inferred from direct assay /// 0005158 // insulin receptor binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0030971 // receptor tyrosine kinase binding // inferred from physical interaction /// 0042301 // phosphate binding // inferred from direct assay 1368037_at NM_019170 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019170.1 /DB_XREF=gi:9506466 /GEN=Cbr /FEA=FLmRNA /CNT=24 /TID=Rn.3425.1 /TIER=FL+Stack /STK=10 /UG=Rn.3425 /LL=29224 /DEF=Rattus norvegicus carbonyl reductase (Cbr), mRNA. /PROD=carbonyl reductase /FL=gb:NM_019170.1 gb:D89069.1 NM_019170 carbonyl reductase 1 /// inducible carbonyl reductase-like Cbr1 /// LOC100360507 100360507 /// 29224 NM_019170 /// XM_002727460 /// XM_002727863 0001542 // ovulation from ovarian follicle // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0017144 // drug metabolic process // not recorded /// 0017144 // drug metabolic process // inferred from sequence or structural similarity /// 0018205 // peptidyl-lysine modification // non-traceable author statement /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0034698 // response to gonadotropin stimulus // inferred from expression pattern /// 0042373 // vitamin K metabolic process // not recorded /// 0042373 // vitamin K metabolic process // inferred from sequence or structural similarity /// 0042376 // phylloquinone catabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005902 // microvillus // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004090 // carbonyl reductase (NADPH) activity // inferred from direct assay /// 0004090 // carbonyl reductase (NADPH) activity // not recorded /// 0004090 // carbonyl reductase (NADPH) activity // inferred from sequence or structural similarity /// 0004090 // carbonyl reductase (NADPH) activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0047021 // 15-hydroxyprostaglandin dehydrogenase (NADP+) activity // inferred from electronic annotation /// 0050221 // prostaglandin-E2 9-reductase activity // inferred from electronic annotation 1368038_at AF260258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF260258.1 /DB_XREF=gi:7839519 /FEA=FLmRNA /CNT=50 /TID=Rn.6258.1 /TIER=FL+Stack /STK=10 /UG=Rn.6258 /LL=64531 /UG_GENE=Synj2bp /DEF=Rattus norvegicus NPW16 mRNA, complete cds. /PROD=NPW16 /FL=gb:AF260258.1 gb:AF107295.1 gb:NM_022599.1 AF260258 synaptojanin 2 binding protein Synj2bp 64531 NM_022599 0006605 // protein targeting // not recorded /// 0007266 // Rho protein signal transduction // not recorded /// 0030100 // regulation of endocytosis // not recorded /// 0048312 // intracellular distribution of mitochondria // inferred from direct assay 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031307 // integral to mitochondrial outer membrane // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction 1368039_at NM_022599 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022599.1 /DB_XREF=gi:12018265 /GEN=Synj2bp /FEA=FLmRNA /CNT=50 /TID=Rn.6258.1 /TIER=FL /STK=2 /UG=Rn.6258 /LL=64531 /DEF=Rattus norvegicus synaptojanin 2 binding protein (Synj2bp), mRNA. /PROD=outer membrane protein /FL=gb:AF260258.1 gb:AF107295.1 gb:NM_022599.1 NM_022599 synaptojanin 2 binding protein Synj2bp 64531 NM_022599 0006605 // protein targeting // not recorded /// 0007266 // Rho protein signal transduction // not recorded /// 0030100 // regulation of endocytosis // not recorded /// 0048312 // intracellular distribution of mitochondria // inferred from direct assay 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031307 // integral to mitochondrial outer membrane // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction 1368040_at BI285174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285174 /DB_XREF=gi:14938548 /DB_XREF=UI-R-DB0-byx-a-03-0-UI.s1 /CLONE=UI-R-DB0-byx-a-03-0-UI /FEA=FLmRNA /CNT=50 /TID=Rn.6258.1 /TIER=Stack /STK=11 /UG=Rn.6258 /LL=64531 /UG_GENE=Synj2bp /UG_TITLE=synaptojanin 2 binding protein /FL=gb:AF260258.1 gb:AF107295.1 gb:NM_022599.1 BI285174 synaptojanin 2 binding protein Synj2bp 64531 NM_022599 0006605 // protein targeting // not recorded /// 0007266 // Rho protein signal transduction // not recorded /// 0030100 // regulation of endocytosis // not recorded /// 0048312 // intracellular distribution of mitochondria // inferred from direct assay 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031307 // integral to mitochondrial outer membrane // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction 1368041_at BF284821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284821 /DB_XREF=gi:11215891 /DB_XREF=EST449412 /CLONE=RGIEW77 /FEA=FLmRNA /CNT=50 /TID=Rn.6258.1 /TIER=Stack /STK=9 /UG=Rn.6258 /LL=64531 /UG_GENE=Synj2bp /UG_TITLE=synaptojanin 2 binding protein /FL=gb:AF260258.1 gb:AF107295.1 gb:NM_022599.1 BF284821 synaptojanin 2 binding protein Synj2bp 64531 NM_022599 0006605 // protein targeting // not recorded /// 0007266 // Rho protein signal transduction // not recorded /// 0030100 // regulation of endocytosis // not recorded /// 0048312 // intracellular distribution of mitochondria // inferred from direct assay 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031307 // integral to mitochondrial outer membrane // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction 1368042_a_at AF275734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF275734.1 /DB_XREF=gi:9082302 /FEA=FLmRNA /CNT=28 /TID=Rn.4121.1 /TIER=FL+Stack /STK=10 /UG=Rn.4121 /LL=25459 /UG_GENE=Hmg1 /DEF=Rattus norvegicus amphoterin mRNA, complete cds. /PROD=amphoterin /FL=gb:M64986.1 gb:AF275734.1 gb:NM_012963.1 AF275734 high-mobility group (nonhistone chromosomal) protein 1-like 1 /// high mobility group box 1 Hmg1l1 /// Hmgb1 25459 /// 679571 NM_001109373 /// NM_012963 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000902 // cell morphogenesis // inferred from mutant phenotype /// 0001654 // eye development // not recorded /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from direct assay /// 0002437 // inflammatory response to antigenic stimulus // not recorded /// 0006288 // base-excision repair, DNA ligation // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006935 // chemotaxis // inferred from direct assay /// 0007399 // nervous system development // inferred from mutant phenotype /// 0007623 // circadian rhythm // inferred from expression pattern /// 0008156 // negative regulation of DNA replication // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0009408 // response to heat // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010942 // positive regulation of cell death // inferred from mutant phenotype /// 0010976 // positive regulation of neuron projection development // inferred from mutant phenotype /// 0014911 // positive regulation of smooth muscle cell migration // inferred from mutant phenotype /// 0017055 // negative regulation of RNA polymerase II transcriptional preinitiation complex assembly // not recorded /// 0030324 // lung development // not recorded /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0031175 // neuron projection development // inferred from genetic interaction /// 0031532 // actin cytoskeleton reorganization // inferred from mutant phenotype /// 0032392 // DNA geometric change // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0033034 // positive regulation of myeloid cell apoptosis // inferred from direct assay /// 0033151 // V(D)J recombination // not recorded /// 0034341 // response to interferon-gamma // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // not recorded /// 0043280 // positive regulation of caspase activity // not recorded /// 0043388 // positive regulation of DNA binding // not recorded /// 0045639 // positive regulation of myeloid cell differentiation // not recorded /// 0045663 // positive regulation of myoblast differentiation // inferred from mutant phenotype /// 0045819 // positive regulation of glycogen catabolic process // not recorded /// 0045931 // positive regulation of mitotic cell cycle // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0050727 // regulation of inflammatory response // inferred from direct assay /// 0050790 // regulation of catalytic activity // not recorded /// 0050831 // male-specific defense response to bacterium // inferred from direct assay /// 0050930 // induction of positive chemotaxis // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // not recorded /// 0051450 // myoblast proliferation // inferred from mutant phenotype /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern 0000793 // condensed chromosome // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0017053 // transcriptional repressor complex // not recorded /// 0043005 // neuron projection // not recorded 0000400 // four-way junction DNA binding // inferred from direct assay /// 0000401 // open form four-way junction DNA binding // inferred from direct assay /// 0000402 // crossed form four-way junction DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003681 // bent DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005125 // cytokine activity // not recorded /// 0005125 // cytokine activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008097 // 5S rRNA binding // inferred from direct assay /// 0008134 // transcription factor binding // not recorded /// 0008201 // heparin binding // inferred from direct assay /// 0008201 // heparin binding // traceable author statement /// 0008201 // heparin binding // inferred from electronic annotation /// 0008301 // DNA bending activity // inferred from direct assay /// 0008301 // DNA bending activity // not recorded /// 0010858 // calcium-dependent protein kinase regulator activity // not recorded /// 0030295 // protein kinase activator activity // not recorded /// 0046983 // protein dimerization activity // inferred from direct assay /// 0050786 // RAGE receptor binding // inferred from mutant phenotype /// 0050786 // RAGE receptor binding // inferred from physical interaction /// 0051861 // glycolipid binding // inferred from direct assay /// 0070491 // transcription repressor binding // not recorded 1368043_at NM_053411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053411.1 /DB_XREF=gi:16758147 /GEN=Snx1 /FEA=FLmRNA /CNT=17 /TID=Rn.2785.1 /TIER=FL+Stack /STK=10 /UG=Rn.2785 /LL=84471 /DEF=Rattus norvegicus sorting nexin 1 (Snx1), mRNA. /PROD=sorting nexin 1 /FL=gb:NM_053411.1 gb:AF218916.1 NM_053411 sorting nexin 1 Snx1 84471 NM_053411 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016197 // endosome transport // inferred from expression pattern /// 0045732 // positive regulation of protein catabolic process // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1368044_at NM_022669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022669.1 /DB_XREF=gi:12083600 /GEN=Scg2 /FEA=FLmRNA /CNT=37 /TID=Rn.45602.1 /TIER=FL+Stack /STK=10 /UG=Rn.45602 /LL=24765 /DEF=Rattus norvegicus Secretogranin II (Scg2), mRNA. /PROD=secretogranin II /FL=gb:M93669.1 gb:NM_022669.1 NM_022669 secretogranin II (chromogranin C) Scg2 24765 NM_022669 0000165 // MAPKKK cascade // not recorded /// 0000165 // MAPKKK cascade // inferred from sequence or structural similarity /// 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from sequence or structural similarity /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0001938 // positive regulation of endothelial cell proliferation // inferred from sequence or structural similarity /// 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0006928 // cellular component movement // not recorded /// 0006928 // cellular component movement // inferred from sequence or structural similarity /// 0006928 // cellular component movement // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // not recorded /// 0023034 // intracellular signaling pathway // inferred from sequence or structural similarity /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0048245 // eosinophil chemotaxis // not recorded /// 0048245 // eosinophil chemotaxis // inferred from sequence or structural similarity /// 0048245 // eosinophil chemotaxis // inferred from electronic annotation /// 0050930 // induction of positive chemotaxis // not recorded /// 0050930 // induction of positive chemotaxis // inferred from sequence or structural similarity /// 0050930 // induction of positive chemotaxis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation /// 0030141 // stored secretory granule // traceable author statement 0005125 // cytokine activity // not recorded /// 0005125 // cytokine activity // inferred from sequence or structural similarity /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042056 // chemoattractant activity // not recorded /// 0042056 // chemoattractant activity // inferred from sequence or structural similarity /// 0042056 // chemoattractant activity // inferred from electronic annotation 1368045_at NM_133600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133600.1 /DB_XREF=gi:19424309 /GEN=Slc31a1 /FEA=FLmRNA /CNT=19 /TID=Rn.2789.1 /TIER=FL+Stack /STK=10 /UG=Rn.2789 /LL=171135 /DEF=Rattus norvegicus solute carrier family 31 (copper transporters), member 1 (Slc31a1), mRNA. /PROD=solute carrier family 31 (copper transporters),member 1 /FL=gb:NM_133600.1 gb:AF268030.1 NM_133600 solute carrier family 31 (copper transporters), member 1 Slc31a1 171135 NM_133600 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005375 // copper ion transmembrane transporter activity // inferred from electronic annotation 1368046_at NM_133600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133600.1 /DB_XREF=gi:19424309 /GEN=Slc31a1 /FEA=FLmRNA /CNT=19 /TID=Rn.2789.1 /TIER=ConsEnd /STK=0 /UG=Rn.2789 /LL=171135 /DEF=Rattus norvegicus solute carrier family 31 (copper transporters), member 1 (Slc31a1), mRNA. /PROD=solute carrier family 31 (copper transporters),member 1 /FL=gb:NM_133600.1 gb:AF268030.1 NM_133600 solute carrier family 31 (copper transporters), member 1 Slc31a1 171135 NM_133600 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005375 // copper ion transmembrane transporter activity // inferred from electronic annotation 1368047_at NM_022866 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022866.1 /DB_XREF=gi:12408327 /GEN=Nadc3 /FEA=FLmRNA /CNT=16 /TID=Rn.3587.1 /TIER=FL+Stack /STK=10 /UG=Rn.3587 /LL=64846 /DEF=Rattus norvegicus sodium-dependent high-affinity dicarboxylate transporter 3 (Nadc3), mRNA. /PROD=sodium-dependent high-affinity dicarboxylatetransporter 3 /FL=gb:NM_022866.1 gb:AF081825.1 gb:AF080451.1 NM_022866 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 Slc13a3 64846 NM_022866 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006820 // anion transport // not recorded /// 0006835 // dicarboxylic acid transport // inferred from direct assay /// 0006835 // dicarboxylic acid transport // not recorded /// 0006835 // dicarboxylic acid transport // inferred from electronic annotation /// 0015744 // succinate transport // inferred from direct assay /// 0015746 // citrate transport // inferred from direct assay /// 0015810 // aspartate transport // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0071436 // sodium ion export // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005626 // insoluble fraction // inferred from direct assay /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030054 // cell junction // not recorded 0005215 // transporter activity // inferred from electronic annotation /// 0005310 // dicarboxylic acid transmembrane transporter activity // inferred from direct assay /// 0005343 // organic acid:sodium symporter activity // inferred from direct assay /// 0015137 // citrate transmembrane transporter activity // inferred from direct assay /// 0015141 // succinate transmembrane transporter activity // inferred from direct assay /// 0015183 // L-aspartate transmembrane transporter activity // inferred from direct assay /// 0015293 // symporter activity // inferred from electronic annotation /// 0015362 // high affinity sodium:dicarboxylate symporter activity // inferred from electronic annotation /// 0015362 // high affinity sodium:dicarboxylate symporter activity // not recorded /// 0017153 // sodium:dicarboxylate symporter activity // inferred from direct assay 1368048_at NM_012657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012657.1 /DB_XREF=gi:6981575 /GEN=Spin2b /FEA=FLmRNA /CNT=16 /TID=Rn.34396.1 /TIER=FL+Stack /STK=10 /UG=Rn.34396 /LL=24794 /DEF=Rattus norvegicus Serine protease inhibitor (Spin2b), mRNA. /PROD=serine protease inhibitor 2b /FL=gb:NM_012657.1 NM_012657 serine (or cysteine) peptidase inhibitor, clade A, member 3K Serpina3k 24794 NM_012657 0034097 // response to cytokine stimulus // not recorded /// 0043434 // response to peptide hormone stimulus // not recorded 0005576 // extracellular region // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1368049_at NM_012670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012670.1 /DB_XREF=gi:6981641 /GEN=Tcp1 /FEA=FLmRNA /CNT=22 /TID=Rn.7102.1 /TIER=FL+Stack /STK=10 /UG=Rn.7102 /LL=24818 /DEF=Rattus norvegicus T-complex 1 (Tcp1), mRNA. /PROD=T-complex 1 /FL=gb:NM_012670.1 NM_012670 t-complex 1 Tcp1 24818 NM_012670 0006457 // protein folding // traceable author statement /// 0006457 // protein folding // inferred from electronic annotation /// 0007286 // spermatid development // traceable author statement /// 0044267 // cellular protein metabolic process // inferred from electronic annotation 0000242 // pericentriolar material // not recorded /// 0000792 // heterochromatin // inferred from direct assay /// 0005720 // nuclear heterochromatin // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005815 // microtubule organizing center // not recorded /// 0005829 // cytosol // not recorded /// 0005832 // chaperonin-containing T-complex // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1368050_at NM_053662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053662.1 /DB_XREF=gi:16758475 /GEN=Ccnl /FEA=FLmRNA /CNT=19 /TID=Rn.12962.1 /TIER=FL+Stack /STK=10 /UG=Rn.12962 /LL=114121 /DEF=Rattus norvegicus cyclin L (Ccnl), mRNA. /PROD=cyclin L /FL=gb:NM_053662.1 gb:AF030091.3 NM_053662 cyclin L1 Ccnl1 114121 NM_053662 0006350 // transcription // inferred from electronic annotation /// 0006396 // RNA processing // non-traceable author statement /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation 1368051_at NM_032066 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032066.1 /DB_XREF=gi:14091749 /GEN=LOC84013 /FEA=FLmRNA /CNT=18 /TID=Rn.19967.1 /TIER=FL+Stack /STK=10 /UG=Rn.19967 /LL=84013 /DEF=Rattus norvegicus smooth muscle-specific 17 beta-hydroxysteroid dehydrogenase type 3 (LOC84013), mRNA. /PROD=smooth muscle-specific 17 beta-hydroxysteroiddehydrogenase type 3 /FL=gb:U81186.1 gb:NM_032066.1 NM_032066 hydroxysteroid (17-beta) dehydrogenase 12 Hsd17b12 84013 NM_032066 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // not recorded /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0001968 // fibronectin binding // inferred from electronic annotation /// 0001968 // fibronectin binding // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004303 // estradiol 17-beta-dehydrogenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005518 // collagen binding // inferred from electronic annotation /// 0005518 // collagen binding // not recorded /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1368052_at NM_133526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133526.1 /DB_XREF=gi:19424175 /GEN=Tm4sf3 /FEA=FLmRNA /CNT=17 /TID=Rn.6087.1 /TIER=FL+Stack /STK=10 /UG=Rn.6087 /LL=171048 /DEF=Rattus norvegicus transmembrane 4 superfamily member 3 (Tm4sf3), mRNA. /PROD=transmembrane 4 superfamily member 3 /FL=gb:NM_133526.1 NM_133526 tetraspanin 8 Tspan8 171048 NM_133526 0030195 // negative regulation of blood coagulation // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1368053_at NM_031235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031235.1 /DB_XREF=gi:13676838 /GEN=Par3 /FEA=FLmRNA /CNT=26 /TID=Rn.31803.1 /TIER=FL+Stack /STK=10 /UG=Rn.31803 /LL=81918 /DEF=Rattus norvegicus three-PDZ containing protein similar to C. elegans PAR3 (partitioning defect) (Par3), mRNA. /PROD=three-PDZ containing protein similar to C.elegans PAR3 (partitioning defect) /FL=gb:NM_031235.1 gb:AB005549.1 NM_031235 par-3 (partitioning defective 3) homolog (C. elegans) Pard3 81918 NM_031235 0006612 // protein targeting to membrane // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0045197 // establishment or maintenance of epithelial cell apical/basal polarity // non-traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0070830 // tight junction assembly // inferred from mutant phenotype /// 0090162 // establishment of epithelial cell polarity // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005819 // spindle // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from direct assay /// 0005912 // adherens junction // not recorded /// 0005913 // cell-cell adherens junction // not recorded /// 0005923 // tight junction // not recorded /// 0005923 // tight junction // inferred from sequence or structural similarity /// 0005923 // tight junction // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0005080 // protein kinase C binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from direct assay /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from direct assay /// 0008289 // lipid binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0032266 // phosphatidylinositol-3-phosphate binding // inferred from direct assay 1368054_at NM_021755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021755.1 /DB_XREF=gi:13489068 /GEN=Lmna /FEA=FLmRNA /CNT=23 /TID=Rn.44161.1 /TIER=FL+Stack /STK=10 /UG=Rn.44161 /LL=60374 /DEF=Rattus norvegicus lamin A (Lmna), mRNA. /PROD=lamin A /FL=gb:NM_021755.1 NM_021755 lamin A Lmna 60374 NM_001002016 0006997 // nucleus organization // not recorded /// 0006997 // nucleus organization // inferred from electronic annotation /// 0006998 // nuclear envelope organization // not recorded /// 0006998 // nuclear envelope organization // traceable author statement /// 0006998 // nuclear envelope organization // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007517 // muscle organ development // not recorded /// 0035105 // sterol regulatory element binding protein nuclear translocation // inferred from electronic annotation /// 0035105 // sterol regulatory element binding protein nuclear translocation // not recorded /// 0055015 // ventricular cardiac muscle cell development // inferred from electronic annotation /// 0055015 // ventricular cardiac muscle cell development // not recorded /// 0090343 // positive regulation of cell aging // not recorded /// 0090343 // positive regulation of cell aging // inferred from sequence or structural similarity 0005626 // insoluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005635 // nuclear envelope // inferred from sequence or structural similarity /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005638 // lamin filament // inferred from electronic annotation /// 0005638 // lamin filament // not recorded /// 0005882 // intermediate filament // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005198 // structural molecule activity // traceable author statement /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368055_a_at BI282866 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282866 /DB_XREF=gi:14934055 /DB_XREF=UI-R-CW0s-ccc-c-10-0-UI.s1 /CLONE=UI-R-CW0s-ccc-c-10-0-UI /FEA=mRNA /CNT=15 /TID=Rn.44161.2 /TIER=Stack /STK=13 /UG=Rn.44161 /LL=60374 /UG_GENE=Lmna /UG_TITLE=lamin A BI282866 lamin A Lmna 60374 NM_001002016 0006997 // nucleus organization // not recorded /// 0006997 // nucleus organization // inferred from electronic annotation /// 0006998 // nuclear envelope organization // not recorded /// 0006998 // nuclear envelope organization // traceable author statement /// 0006998 // nuclear envelope organization // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007517 // muscle organ development // not recorded /// 0035105 // sterol regulatory element binding protein nuclear translocation // inferred from electronic annotation /// 0035105 // sterol regulatory element binding protein nuclear translocation // not recorded /// 0055015 // ventricular cardiac muscle cell development // inferred from electronic annotation /// 0055015 // ventricular cardiac muscle cell development // not recorded /// 0090343 // positive regulation of cell aging // not recorded /// 0090343 // positive regulation of cell aging // inferred from sequence or structural similarity 0005626 // insoluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005635 // nuclear envelope // inferred from sequence or structural similarity /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005638 // lamin filament // inferred from electronic annotation /// 0005638 // lamin filament // not recorded /// 0005882 // intermediate filament // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005198 // structural molecule activity // traceable author statement /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368056_at U24150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U24150.1 /DB_XREF=gi:1061324 /FEA=FLmRNA /CNT=16 /TID=Rn.5875.1 /TIER=FL+Stack /STK=10 /UG=Rn.5875 /LL=24855 /UG_GENE=Tsc2 /UG_TITLE=Tuberous sclerosis 2, (renal carcinoma) /DEF=Rattus norvegicus tuberous sclerosis 2 homolog mRNA, complete cds. /FL=gb:U24150.1 gb:D50413.1 gb:NM_012680.1 U24150 tuberous sclerosis 2 Tsc2 24855 NM_012680 0001843 // neural tube closure // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006606 // protein import into nucleus // not recorded /// 0006953 // acute-phase response // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from direct assay /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0008104 // protein localization // not recorded /// 0008104 // protein localization // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0014065 // phosphoinositide 3-kinase cascade // not recorded /// 0014065 // phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014067 // negative regulation of phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014067 // negative regulation of phosphoinositide 3-kinase cascade // not recorded /// 0030030 // cell projection organization // inferred from mutant phenotype /// 0030100 // regulation of endocytosis // inferred from electronic annotation /// 0030100 // regulation of endocytosis // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from direct assay /// 0032007 // negative regulation of TOR signaling cascade // inferred from direct assay /// 0032956 // regulation of actin cytoskeleton organization // inferred from mutant phenotype /// 0043407 // negative regulation of MAP kinase activity // inferred from mutant phenotype /// 0043491 // protein kinase B signaling cascade // not recorded /// 0043491 // protein kinase B signaling cascade // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from electronic annotation /// 0045184 // establishment of protein localization // inferred from mutant phenotype /// 0045792 // negative regulation of cell size // inferred from mutant phenotype /// 0046626 // regulation of insulin receptor signaling pathway // inferred from electronic annotation /// 0046626 // regulation of insulin receptor signaling pathway // not recorded /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0048009 // insulin-like growth factor receptor signaling pathway // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // inferred from direct assay /// 0050918 // positive chemotaxis // inferred from electronic annotation /// 0050918 // positive chemotaxis // not recorded /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051260 // protein homooligomerization // inferred from mutant phenotype /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from mutant phenotype /// 0051492 // regulation of stress fiber assembly // inferred from mutant phenotype /// 0051726 // regulation of cell cycle // inferred from mutant phenotype /// 0051893 // regulation of focal adhesion assembly // inferred from mutant phenotype /// 0051898 // negative regulation of protein kinase B signaling cascade // inferred from electronic annotation /// 0051898 // negative regulation of protein kinase B signaling cascade // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005901 // caveola // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0033596 // TSC1-TSC2 complex // inferred from electronic annotation /// 0033596 // TSC1-TSC2 complex // not recorded /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0043234 // protein complex // inferred from mutant phenotype /// 0044430 // cytoskeletal part // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from direct assay /// 0005096 // GTPase activator activity // not recorded /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030695 // GTPase regulator activity // inferred from mutant phenotype /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1368057_at NM_012804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012804.1 /DB_XREF=gi:6981449 /GEN=Abcd3 /FEA=FLmRNA /CNT=15 /TID=Rn.7024.1 /TIER=FL+Stack /STK=10 /UG=Rn.7024 /LL=25270 /DEF=Rattus norvegicus ATP-binding cassette, sub-family D (ALD), member 3 (Abcd3), mRNA. /PROD=peroxisomal membrane protein 1 /FL=gb:NM_012804.1 NM_012804 ATP-binding cassette, sub-family D (ALD), member 3 Abcd3 25270 NM_012804 0006810 // transport // inferred from electronic annotation /// 0015910 // peroxisomal long-chain fatty acid import // traceable author statement /// 0042221 // response to chemical stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005777 // peroxisome // not recorded /// 0005777 // peroxisome // non-traceable author statement /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from mutant phenotype /// 0005778 // peroxisomal membrane // not recorded /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // traceable author statement /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation /// 0043621 // protein self-association // inferred from direct assay 1368058_at NM_022394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022394.1 /DB_XREF=gi:11693163 /GEN=Safb /FEA=FLmRNA /CNT=15 /TID=Rn.829.1 /TIER=FL+Stack /STK=10 /UG=Rn.829 /LL=64196 /DEF=Rattus norvegicus scaffold attachment factor B (Safb), mRNA. /PROD=scaffold attachment factor B /FL=gb:AF056324.1 gb:NM_022394.1 NM_022394 scaffold attachment factor B Safb 64196 NM_022394 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0030520 // estrogen receptor signaling pathway // not recorded /// 0040007 // growth // not recorded /// 0042445 // hormone metabolic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0050684 // regulation of mRNA processing // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1368059_at NM_053955 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053955.1 /DB_XREF=gi:16758839 /GEN=Crym /FEA=FLmRNA /CNT=14 /TID=Rn.24561.1 /TIER=FL+Stack /STK=10 /UG=Rn.24561 /LL=117024 /DEF=Rattus norvegicus crystallin, mu (Crym), mRNA. /PROD=crystallin, mu /FL=gb:NM_053955.1 NM_053955 crystallin, mu Crym 117024 NM_053955 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006839 // mitochondrial transport // inferred from direct assay /// 0007605 // sensory perception of sound // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0033280 // response to vitamin D // inferred from expression pattern /// 0042403 // thyroid hormone metabolic process // not recorded /// 0070327 // thyroid hormone transport // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay 0003714 // transcription corepressor activity // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0042562 // hormone binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0050661 // NADP or NADPH binding // not recorded /// 0070324 // thyroid hormone binding // not recorded 1368060_at NM_031714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031714.1 /DB_XREF=gi:14269571 /GEN=Hrsp12 /FEA=FLmRNA /CNT=14 /TID=Rn.6987.1 /TIER=FL+Stack /STK=10 /UG=Rn.6987 /LL=65151 /DEF=Rattus norvegicus heat-responsive protein 12 (Hrsp12), mRNA. /PROD=heat-responsive protein 12 /FL=gb:NM_031714.1 gb:AF015949.1 NM_031714 heat-responsive protein 12 Hrsp12 65151 NM_031714 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1368061_at NM_031742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031742.1 /DB_XREF=gi:13929045 /GEN=Kcnh1 /FEA=FLmRNA /CNT=13 /TID=Rn.11071.1 /TIER=FL+Stack /STK=10 /UG=Rn.11071 /LL=65198 /DEF=Rattus norvegicus potassium voltage-gated channel, subfamily H (eag-related), member 1 (Kcnh1), mRNA. /PROD=potassium voltage-gated channel, subfamily H(eag-related), member 1 /FL=gb:NM_031742.1 NM_031742 potassium voltage-gated channel, subfamily H (eag-related), member 1 Kcnh1 65198 NM_031742 0000160 // two-component signal transduction system (phosphorelay) // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000155 // two-component sensor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation 1368062_at NM_133593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133593.1 /DB_XREF=gi:19424295 /GEN=Ap3m1 /FEA=FLmRNA /CNT=13 /TID=Rn.10959.1 /TIER=FL+Stack /STK=10 /UG=Rn.10959 /LL=171126 /DEF=Rattus norvegicus adaptor-related protein complex AP-3, mu 1 subunit (Ap3m1), mRNA. /PROD=adaptor-related protein complex AP-3, mu 1subunit /FL=gb:NM_133593.1 gb:L07073.1 NM_133593 adaptor-related protein complex 3, mu 1 subunit Ap3m1 171126 NM_133593 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1368063_a_at NM_133423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133423.1 /DB_XREF=gi:19173797 /GEN=YT521 /FEA=FLmRNA /CNT=25 /TID=Rn.48752.1 /TIER=FL+Stack /STK=10 /UG=Rn.48752 /LL=170956 /DEF=Rattus norvegicus splicing factor YT521-B (YT521), mRNA. /PROD=splicing factor YT521-B /FL=gb:NM_133423.1 gb:AF144731.1 NM_133423 YTH domain containing 1 Ythdc1 170956 NM_133423 0000398 // nuclear mRNA splicing, via spliceosome // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from direct assay /// 0016604 // nuclear body // inferred from direct assay 0005515 // protein binding // inferred from direct assay 1368064_a_at U31884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U31884.1 /DB_XREF=gi:975308 /FEA=FLmRNA /CNT=1 /TID=Rn.11064.2 /TIER=FL /STK=1 /UG=Rn.11064 /LL=24311 /UG_GENE=Ddc /DEF=Rattus norvegicus aromatic L-amino acid decarboxylase mRNA, complete cds, alternatively spliced 3 end. /PROD=aromatic L-amino acid decarboxylase /FL=gb:U31884.1 U31884 dopa decarboxylase (aromatic L-amino acid decarboxylase) Ddc 24311 NM_012545 0006519 // cellular amino acid and derivative metabolic process // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from expression pattern /// 0009636 // response to toxin // inferred from electronic annotation /// 0009636 // response to toxin // not recorded /// 0019752 // carboxylic acid metabolic process // inferred from electronic annotation /// 0042416 // dopamine biosynthetic process // inferred from direct assay /// 0042417 // dopamine metabolic process // traceable author statement /// 0042423 // catecholamine biosynthetic process // traceable author statement /// 0042423 // catecholamine biosynthetic process // inferred from electronic annotation /// 0042428 // serotonin metabolic process // traceable author statement 0005622 // intracellular // traceable author statement /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004058 // aromatic-L-amino-acid decarboxylase activity // inferred from direct assay /// 0004058 // aromatic-L-amino-acid decarboxylase activity // not recorded /// 0004058 // aromatic-L-amino-acid decarboxylase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016597 // amino acid binding // inferred from direct assay /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from direct assay /// 0030170 // pyridoxal phosphate binding // traceable author statement /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1368065_at NM_053341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053341.1 /DB_XREF=gi:16758059 /GEN=Rgs19 /FEA=FLmRNA /CNT=16 /TID=Rn.30044.1 /TIER=FL+Stack /STK=10 /UG=Rn.30044 /LL=83823 /DEF=Rattus norvegicus regulator of G-protein signaling 19 (Rgs19), mRNA. /PROD=regulator of G-protein signaling 19 /FL=gb:AF032120.1 gb:AF089817.1 gb:NM_053341.1 NM_053341 GIPC PDZ domain containing family, member 1 Gipc1 83823 NM_053341 0006605 // protein targeting // inferred from electronic annotation /// 0006605 // protein targeting // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0014047 // glutamate secretion // inferred from electronic annotation /// 0014047 // glutamate secretion // not recorded /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0031647 // regulation of protein stability // inferred from electronic annotation /// 0031647 // regulation of protein stability // not recorded /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043542 // endothelial cell migration // inferred from electronic annotation /// 0043542 // endothelial cell migration // not recorded /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005903 // brush border // inferred from direct assay /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0008021 // synaptic vesicle // not recorded /// 0012506 // vesicle membrane // inferred from electronic annotation /// 0012506 // vesicle membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from direct assay /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043197 // dendritic spine // not recorded /// 0043198 // dendritic shaft // inferred from electronic annotation /// 0043198 // dendritic shaft // not recorded /// 0044445 // cytosolic part // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017022 // myosin binding // inferred from electronic annotation /// 0017022 // myosin binding // not recorded /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1368066_at NM_053812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053812.1 /DB_XREF=gi:16758655 /GEN=Bak1 /FEA=FLmRNA /CNT=15 /TID=Rn.14598.1 /TIER=FL+Stack /STK=10 /UG=Rn.14598 /LL=116502 /DEF=Rattus norvegicus BCL2-antagonistkiller 1 (Bak1), mRNA. /PROD=BCL2-antagonistkiller 1 /FL=gb:NM_053812.1 gb:AF259504.1 NM_053812 BCL2-antagonist/killer 1 Bak1 116502 NM_053812 0001776 // leukocyte homeostasis // inferred from electronic annotation /// 0001776 // leukocyte homeostasis // not recorded /// 0001782 // B cell homeostasis // inferred from electronic annotation /// 0001782 // B cell homeostasis // not recorded /// 0001783 // B cell apoptosis // inferred from electronic annotation /// 0001783 // B cell apoptosis // not recorded /// 0001836 // release of cytochrome c from mitochondria // inferred from mutant phenotype /// 0001836 // release of cytochrome c from mitochondria // not recorded /// 0001836 // release of cytochrome c from mitochondria // inferred from sequence or structural similarity /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0001974 // blood vessel remodeling // not recorded /// 0002262 // myeloid cell homeostasis // inferred from electronic annotation /// 0002262 // myeloid cell homeostasis // not recorded /// 0002352 // B cell negative selection // inferred from electronic annotation /// 0002352 // B cell negative selection // not recorded /// 0006915 // apoptosis // inferred from mutant phenotype /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008053 // mitochondrial fusion // inferred from electronic annotation /// 0008053 // mitochondrial fusion // not recorded /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008635 // activation of caspase activity by cytochrome c // inferred from electronic annotation /// 0008635 // activation of caspase activity by cytochrome c // not recorded /// 0009620 // response to fungus // inferred from electronic annotation /// 0009620 // response to fungus // not recorded /// 0010046 // response to mycotoxin // inferred from electronic annotation /// 0010046 // response to mycotoxin // not recorded /// 0010225 // response to UV-C // inferred from expression pattern /// 0010248 // establishment or maintenance of transmembrane electrochemical gradient // not recorded /// 0010248 // establishment or maintenance of transmembrane electrochemical gradient // inferred from sequence or structural similarity /// 0010332 // response to gamma radiation // inferred from electronic annotation /// 0010332 // response to gamma radiation // not recorded /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from electronic annotation /// 0010524 // positive regulation of calcium ion transport into cytosol // not recorded /// 0010629 // negative regulation of gene expression // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0031018 // endocrine pancreas development // inferred from expression pattern /// 0031100 // organ regeneration // inferred from expression pattern /// 0032471 // reduction of endoplasmic reticulum calcium ion concentration // inferred from electronic annotation /// 0032471 // reduction of endoplasmic reticulum calcium ion concentration // not recorded /// 0033137 // negative regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033137 // negative regulation of peptidyl-serine phosphorylation // not recorded /// 0035108 // limb morphogenesis // inferred from electronic annotation /// 0035108 // limb morphogenesis // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043496 // regulation of protein homodimerization activity // not recorded /// 0043497 // regulation of protein heterodimerization activity // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0046902 // regulation of mitochondrial membrane permeability // not recorded /// 0046902 // regulation of mitochondrial membrane permeability // inferred from sequence or structural similarity /// 0048597 // post-embryonic camera-type eye morphogenesis // inferred from electronic annotation /// 0048597 // post-embryonic camera-type eye morphogenesis // not recorded /// 0048872 // homeostasis of number of cells // not recorded /// 0048872 // homeostasis of number of cells // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0051881 // regulation of mitochondrial membrane potential // not recorded /// 0051881 // regulation of mitochondrial membrane potential // inferred from sequence or structural similarity /// 0060068 // vagina development // inferred from electronic annotation /// 0060068 // vagina development // not recorded /// 0070059 // apoptosis in response to endoplasmic reticulum stress // inferred from electronic annotation /// 0070059 // apoptosis in response to endoplasmic reticulum stress // not recorded /// 0090200 // positive regulation of release of cytochrome c from mitochondria // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005741 // mitochondrial outer membrane // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // not recorded /// 0046930 // pore complex // not recorded /// 0046930 // pore complex // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0031072 // heat shock protein binding // inferred from physical interaction /// 0042802 // identical protein binding // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046982 // protein heterodimerization activity // not recorded /// 0051087 // chaperone binding // inferred from physical interaction /// 0051400 // BH domain binding // inferred from physical interaction 1368067_at NM_031615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031615.1 /DB_XREF=gi:13928841 /GEN=Znf148 /FEA=FLmRNA /CNT=14 /TID=Rn.64671.1 /TIER=FL+Stack /STK=10 /UG=Rn.64671 /LL=58820 /DEF=Rattus norvegicus zinc finger protein 148 (Znf148), mRNA. /PROD=zinc finger protein 148 /FL=gb:U30381.1 gb:NM_031615.1 NM_031615 zinc finger protein 148 Zfp148 58820 NM_031615 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006350 // transcription // inferred from electronic annotation /// 0006461 // protein complex assembly // inferred from mutant phenotype /// 0007276 // gamete generation // inferred from electronic annotation /// 0007276 // gamete generation // not recorded /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from direct assay /// 0016564 // transcription repressor activity // inferred from direct assay /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368068_a_at NM_130740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130740.1 /DB_XREF=gi:18543342 /GEN=Pacsin2 /FEA=FLmRNA /CNT=14 /TID=Rn.22783.1 /TIER=FL+Stack /STK=10 /UG=Rn.22783 /LL=124461 /DEF=Rattus norvegicus protein kinase C and casein kinase substrate in neurons 2 (Pacsin2), mRNA. /PROD=protein kinase C and casein kinase substrate inneurons 2 /FL=gb:AF139492.1 gb:NM_130740.1 gb:AF139494.1 NM_130740 protein kinase C and casein kinase substrate in neurons 2 Pacsin2 124461 NM_130740 0006897 // endocytosis // inferred from electronic annotation /// 0045806 // negative regulation of endocytosis // not recorded 0005737 // cytoplasm // not recorded /// 0005802 // trans-Golgi network // not recorded /// 0005829 // cytosol // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008092 // cytoskeletal protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1368069_at NM_031153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031153.1 /DB_XREF=gi:13592149 /GEN=Conneck1 /FEA=FLmRNA /CNT=14 /TID=Rn.38393.1 /TIER=FL+Stack /STK=10 /UG=Rn.38393 /LL=81859 /DEF=Rattus norvegicus shank-interacting protein (Conneck1), mRNA. /PROD=shank-interacting protein /FL=gb:NM_031153.1 gb:AF203906.1 NM_031153 SHANK-associated RH domain interactor Sharpin 81859 NM_031153 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0008544 // epidermis development // inferred from electronic annotation /// 0008544 // epidermis development // not recorded /// 0030262 // apoptotic nuclear change // inferred from electronic annotation /// 0030262 // apoptotic nuclear change // not recorded /// 0031424 // keratinization // inferred from electronic annotation /// 0031424 // keratinization // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0045211 // postsynaptic membrane // traceable author statement 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1368070_at NM_031656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031656.1 /DB_XREF=gi:13928907 /GEN=Stx8 /FEA=FLmRNA /CNT=14 /TID=Rn.20291.1 /TIER=FL+Stack /STK=10 /UG=Rn.20291 /LL=59074 /DEF=Rattus norvegicus syntaxin-like protein 3I35 (Stx8), mRNA. /PROD=syntaxin-like protein 3I35 /FL=gb:NM_031656.1 gb:AF033109.1 NM_031656 syntaxin 8 Stx8 59074 NM_031656 0006810 // transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031201 // SNARE complex // inferred from direct assay 0031625 // ubiquitin protein ligase binding // not recorded 1368071_at NM_134410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134410.1 /DB_XREF=gi:19705542 /GEN=Mg87 /FEA=FLmRNA /CNT=13 /TID=Rn.11802.1 /TIER=FL+Stack /STK=10 /UG=Rn.11802 /LL=171451 /DEF=Rattus norvegicus Mg87 protein (Mg87), mRNA. /PROD=Mg87 protein /FL=gb:NM_134410.1 gb:AF095741.1 NM_134410 MOCO sulphurase C-terminal domain containing 2 Mosc2 171451 NM_134410 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0030151 // molybdenum ion binding // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1368072_at NM_019290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019290.1 /DB_XREF=gi:9506428 /GEN=Btg3 /FEA=FLmRNA /CNT=13 /TID=Rn.8897.1 /TIER=FL+Stack /STK=10 /UG=Rn.8897 /LL=54230 /DEF=Rattus norvegicus B-cell translocation gene 3 (Btg3), mRNA. /PROD=B-cell translocation gene 3 /FL=gb:AF087037.1 gb:NM_019290.1 NM_019290 BTG family, member 3 Btg3 54230 NM_019290 0006979 // response to oxidative stress // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // non-traceable author statement /// 0045930 // negative regulation of mitotic cell cycle // not recorded 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded 1368073_at NM_012591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012591.1 /DB_XREF=gi:6981103 /GEN=Irf1 /FEA=FLmRNA /CNT=12 /TID=Rn.6396.1 /TIER=FL+Stack /STK=10 /UG=Rn.6396 /LL=24508 /DEF=Rattus norvegicus Interferon regulatory factor 1 (Irf1), mRNA. /PROD=interferon regulatory factor 1 /FL=gb:NM_012591.1 gb:M34253.1 NM_012591 interferon regulatory factor 1 Irf1 24508 NM_012591 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0042127 // regulation of cell proliferation // non-traceable author statement /// 0043374 // CD8-positive, alpha-beta T cell differentiation // inferred from electronic annotation /// 0043374 // CD8-positive, alpha-beta T cell differentiation // not recorded /// 0045084 // positive regulation of interleukin-12 biosynthetic process // inferred from electronic annotation /// 0045084 // positive regulation of interleukin-12 biosynthetic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1368074_at NM_080783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080783.1 /DB_XREF=gi:18158452 /GEN=Gale /FEA=FLmRNA /CNT=12 /TID=Rn.29908.1 /TIER=FL+Stack /STK=10 /UG=Rn.29908 /DEF=Rattus norvegicus galactose-4-epimerase, UDP (Gale), mRNA. /PROD=galactose-4-epimerase, UDP /FL=gb:NM_080783.1 NM_080783 UDP-galactose-4-epimerase Gale 114860 NM_080783 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006012 // galactose metabolic process // not recorded /// 0006012 // galactose metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0019388 // galactose catabolic process // inferred from electronic annotation /// 0019388 // galactose catabolic process // not recorded /// 0044237 // cellular metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003978 // UDP-glucose 4-epimerase activity // inferred from electronic annotation /// 0003978 // UDP-glucose 4-epimerase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0016857 // racemase and epimerase activity, acting on carbohydrates and derivatives // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0050662 // coenzyme binding // inferred from electronic annotation 1368075_at NM_012732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012732.2 /DB_XREF=gi:18777743 /GEN=Lipa /FEA=FLmRNA /CNT=19 /TID=Rn.48656.1 /TIER=FL+Stack /STK=10 /UG=Rn.48656 /DEF=Rattus norvegicus Cholesterol esterase (pancreatic) (Lipa), mRNA. /PROD=cholesterol esterase (pancreatic), see D3Wox12,D3Wox13 , D3Wox26 and D3Mgh25 /FL=gb:NM_012732.2 NM_012732 lipase A, lysosomal acid, cholesterol esterase Lipa 25055 NM_012732 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0001816 // cytokine production // inferred from electronic annotation /// 0001816 // cytokine production // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from direct assay /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0016125 // sterol metabolic process // inferred from direct assay /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0048771 // tissue remodeling // inferred from electronic annotation /// 0048771 // tissue remodeling // not recorded /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // not recorded 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation 0004771 // sterol esterase activity // inferred from direct assay /// 0004771 // sterol esterase activity // not recorded /// 0004771 // sterol esterase activity // inferred from electronic annotation /// 0016298 // lipase activity // inferred from direct assay /// 0016298 // lipase activity // not recorded /// 0016298 // lipase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1368076_at NM_052801 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_052801.1 /DB_XREF=gi:16258812 /GEN=Vhl /FEA=FLmRNA /CNT=17 /TID=Rn.11059.1 /TIER=FL+Stack /STK=10 /UG=Rn.11059 /LL=24874 /DEF=Rattus norvegicus von Hippel-Lindau syndrome (Vhl), mRNA. /PROD=von Hippel-Lindau syndrome /FL=gb:NM_052801.1 gb:U14746.1 NM_052801 von Hippel-Lindau tumor suppressor Vhl 24874 NM_052801 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0001666 // response to hypoxia // inferred from mutant phenotype /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0030163 // protein catabolic process // not recorded /// 0030182 // neuron differentiation // inferred from direct assay /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0042069 // regulation of catecholamine metabolic process // inferred from mutant phenotype /// 0043534 // blood vessel endothelial cell migration // inferred from electronic annotation /// 0043534 // blood vessel endothelial cell migration // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from expression pattern /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0051291 // protein heterooligomerization // inferred from physical interaction 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030891 // VCB complex // inferred from direct assay 0004842 // ubiquitin-protein ligase activity // inferred by curator /// 0005515 // protein binding // inferred by curator /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // traceable author statement 1368077_at NM_012558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012558.1 /DB_XREF=gi:6978830 /GEN=Fbp1 /FEA=FLmRNA /CNT=15 /TID=Rn.33703.1 /TIER=FL+Stack /STK=10 /UG=Rn.33703 /LL=24362 /DEF=Rattus norvegicus Fructose-1,6- biphosphatase (Fbp1), mRNA. /PROD=fructose-1,6- biphosphatase /FL=gb:NM_012558.1 gb:J04112.1 gb:M86240.1 NM_012558 fructose-1,6-bisphosphatase 1 Fbp1 24362 NM_012558 0005975 // carbohydrate metabolic process // inferred from direct assay /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006002 // fructose 6-phosphate metabolic process // inferred from direct assay /// 0006094 // gluconeogenesis // inferred from direct assay /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042132 // fructose 1,6-bisphosphate 1-phosphatase activity // inferred from direct assay /// 0042132 // fructose 1,6-bisphosphate 1-phosphatase activity // traceable author statement /// 0042132 // fructose 1,6-bisphosphate 1-phosphatase activity // inferred from electronic annotation /// 0042578 // phosphoric ester hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048029 // monosaccharide binding // inferred from direct assay 1368078_at NM_022604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022604.1 /DB_XREF=gi:12018273 /GEN=Pg25 /FEA=FLmRNA /CNT=13 /TID=Rn.6376.1 /TIER=FL+Stack /STK=10 /UG=Rn.6376 /LL=64536 /DEF=Rattus norvegicus pineal specific PG25 protein (Pg25), mRNA. /PROD=pineal specific PG25 protein /FL=gb:U80818.1 gb:NM_022604.1 NM_022604 endothelial cell-specific molecule 1 Esm1 64536 NM_022604 0001558 // regulation of cell growth // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005520 // insulin-like growth factor binding // inferred from electronic annotation 1368079_at NM_053826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053826.1 /DB_XREF=gi:16758675 /GEN=Pdk1 /FEA=FLmRNA /CNT=13 /TID=Rn.11185.1 /TIER=FL+Stack /STK=10 /UG=Rn.11185 /LL=116551 /DEF=Rattus norvegicus pyruvate dehydrogenase kinase, isoenzyme 1 (Pdk1), mRNA. /PROD=pyruvate dehydrogenase kinase, isoenzyme 1 /FL=gb:L22294.1 gb:NM_053826.1 NM_053826 pyruvate dehydrogenase kinase, isozyme 1 Pdk1 116551 NM_053826 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from mutant phenotype /// 0010510 // regulation of acetyl-CoA biosynthetic process from pyruvate // not recorded /// 0018106 // peptidyl-histidine phosphorylation // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0045254 // pyruvate dehydrogenase complex // inferred from direct assay 0000155 // two-component sensor activity // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004673 // protein histidine kinase activity // inferred from electronic annotation /// 0004740 // pyruvate dehydrogenase (acetyl-transferring) kinase activity // inferred from direct assay /// 0004740 // pyruvate dehydrogenase (acetyl-transferring) kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay 1368080_at NM_054008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_054008.1 /DB_XREF=gi:16758927 /GEN=Rgc32 /FEA=FLmRNA /CNT=13 /TID=Rn.3504.1 /TIER=FL+Stack /STK=10 /UG=Rn.3504 /LL=117183 /DEF=Rattus norvegicus Rgc32 protein (Rgc32), mRNA. /PROD=Rgc32 protein /FL=gb:AF036548.1 gb:NM_054008.1 NM_054008 response gene to complement 32 Rgc32 117183 NM_054008 0007049 // cell cycle // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // not recorded 1368081_at NM_024396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024396.1 /DB_XREF=gi:13242307 /GEN=Abca2 /FEA=FLmRNA /CNT=12 /TID=Rn.13115.1 /TIER=FL+Stack /STK=10 /UG=Rn.13115 /LL=79248 /DEF=Rattus norvegicus ATP-binding cassette, sub-family A (ABC1), member 2 (Abca2), mRNA. /PROD=ATP-binding cassette, sub-family A (ABC1),member 2 /FL=gb:NM_024396.1 gb:AB037937.1 NM_024396 ATP-binding cassette, sub-family A (ABC1), member 2 Abca2 79248 NM_024396 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006810 // transport // non-traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0032383 // regulation of intracellular cholesterol transport // not recorded /// 0032383 // regulation of intracellular cholesterol transport // inferred from sequence or structural similarity /// 0042632 // cholesterol homeostasis // not recorded /// 0042632 // cholesterol homeostasis // inferred from sequence or structural similarity /// 0048545 // response to steroid hormone stimulus // not recorded /// 0048545 // response to steroid hormone stimulus // inferred from sequence or structural similarity 0005765 // lysosomal membrane // not recorded /// 0005765 // lysosomal membrane // inferred from sequence or structural similarity /// 0005815 // microtubule organizing center // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0016887 // ATPase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0016887 // ATPase activity // inferred from sequence or structural similarity /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1368082_at NM_017048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017048.1 /DB_XREF=gi:8394309 /GEN=Slc4a2 /FEA=FLmRNA /CNT=12 /TID=Rn.9860.1 /TIER=FL+Stack /STK=10 /UG=Rn.9860 /LL=24780 /DEF=Rattus norvegicus Solute carrier family 4, member 2, anion exchange protein 2 (Slc4a2), mRNA. /PROD=solute carrier family 4, member 2, anionexchange protein 2 /FL=gb:NM_017048.1 gb:J05166.1 NM_017048 solute carrier family 4 (anion exchanger), member 2 Slc4a2 24780 NM_017048 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006820 // anion transport // inferred from electronic annotation /// 0006821 // chloride transport // not recorded /// 0006821 // chloride transport // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from expression pattern /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0005452 // inorganic anion exchanger activity // inferred from electronic annotation /// 0008509 // anion transmembrane transporter activity // inferred from electronic annotation /// 0015108 // chloride transmembrane transporter activity // inferred from electronic annotation /// 0015108 // chloride transmembrane transporter activity // not recorded /// 0015297 // antiporter activity // inferred from electronic annotation /// 0015301 // anion:anion antiporter activity // inferred from electronic annotation 1368083_at NM_052981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_052981.1 /DB_XREF=gi:16418482 /GEN=Ccnh /FEA=FLmRNA /CNT=12 /TID=Rn.23255.1 /TIER=FL+Stack /STK=10 /UG=Rn.23255 /LL=84389 /DEF=Rattus norvegicus cyclin H (Ccnh), mRNA. /PROD=cyclin H /FL=gb:NM_052981.1 gb:AF154914.1 NM_052981 cyclin H Ccnh 84389 NM_052981 0000718 // nucleotide-excision repair, DNA damage removal // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005675 // holo TFIIH complex // not recorded /// 0005675 // holo TFIIH complex // inferred from sequence or structural similarity /// 0005675 // holo TFIIH complex // inferred from electronic annotation /// 0019907 // cyclin-dependent protein kinase activating kinase holoenzyme complex // inferred from electronic annotation /// 0019907 // cyclin-dependent protein kinase activating kinase holoenzyme complex // not recorded 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0008094 // DNA-dependent ATPase activity // inferred from sequence or structural similarity /// 0008094 // DNA-dependent ATPase activity // inferred from electronic annotation /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // not recorded /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from sequence or structural similarity /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1368084_at NM_013097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013097.1 /DB_XREF=gi:6978768 /GEN=Dnase1 /FEA=FLmRNA /CNT=12 /TID=Rn.6077.1 /TIER=FL+Stack /STK=10 /UG=Rn.6077 /LL=25633 /DEF=Rattus norvegicus Deoxyribonuclease I (Dnase1), mRNA. /PROD=deoxyribonuclease I /FL=gb:AF397151.1 gb:AF397150.1 gb:NM_013097.1 NM_013097 deoxyribonuclease I Dnase1 25633 NM_013097 0006308 // DNA catabolic process // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004530 // deoxyribonuclease I activity // inferred from direct assay /// 0004530 // deoxyribonuclease I activity // inferred from electronic annotation /// 0004536 // deoxyribonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1368085_at NM_133595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133595.1 /DB_XREF=gi:19424299 /GEN=Gchfr /FEA=FLmRNA /CNT=11 /TID=Rn.11137.1 /TIER=FL+Stack /STK=10 /UG=Rn.11137 /LL=171128 /DEF=Rattus norvegicus GTP cyclohydrolase I feedback regulatory protein (Gchfr), mRNA. /PROD=GTP cyclohydrolase I feedback regulatoryprotein /FL=gb:U85512.1 gb:U53710.1 gb:NM_133595.1 NM_133595 GTP cyclohydrolase I feedback regulator Gchfr 171128 NM_133595 0006461 // protein complex assembly // inferred from direct assay /// 0009890 // negative regulation of biosynthetic process // inferred from electronic annotation /// 0043105 // negative regulation of GTP cyclohydrolase I activity // inferred from direct assay /// 0045428 // regulation of nitric oxide biosynthetic process // non-traceable author statement /// 0051291 // protein heterooligomerization // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded /// 0042470 // melanosome // inferred from electronic annotation /// 0042470 // melanosome // not recorded /// 0043234 // protein complex // inferred from direct assay 0004857 // enzyme inhibitor activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from direct assay /// 0019899 // enzyme binding // inferred from direct assay /// 0030742 // GTP-dependent protein binding // inferred from physical interaction /// 0043106 // GTP cyclohydrolase I binding // inferred from direct assay /// 0043106 // GTP cyclohydrolase I binding // inferred from physical interaction 1368086_a_at D45252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D45252.1 /DB_XREF=gi:639864 /FEA=FLmRNA /CNT=1 /TID=Rn.10211.2 /TIER=FL /STK=1 /UG=Rn.10211 /LL=81681 /UG_GENE=Lss /DEF=Rattus norvegicus mRNA for 2,3-oxidosqualene:lanosterol cyclase, complete cds. /PROD=2,3-oxidosqualene:lanosterol cyclase /FL=gb:D45252.1 D45252 lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) Lss 81681 NM_031049 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from direct assay /// 0006695 // cholesterol biosynthetic process // inferred from mutant phenotype /// 0006695 // cholesterol biosynthetic process // not recorded /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0016125 // sterol metabolic process // inferred from mutant phenotype 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000250 // lanosterol synthase activity // inferred from direct assay /// 0000250 // lanosterol synthase activity // inferred from mutant phenotype /// 0000250 // lanosterol synthase activity // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0016866 // intramolecular transferase activity // inferred from electronic annotation 1368087_a_at NM_133545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133545.1 /DB_XREF=gi:19424211 /GEN=Ptp2E /FEA=FLmRNA /CNT=14 /TID=Rn.11310.1 /TIER=FL+Stack /STK=10 /UG=Rn.11310 /LL=171070 /DEF=Rattus norvegicus protein tyrosine phosphatase 2E (Ptp2E), mRNA. /PROD=protein tyrosine phosphatase 2E /FL=gb:NM_133545.1 gb:U17971.1 NM_133545 protein tyrosine phosphatase, non-receptor type 21 Ptpn21 171070 NM_133545 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007010 // cytoskeleton organization // non-traceable author statement /// 0016311 // dephosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1368088_at NM_080885 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080885.1 /DB_XREF=gi:18266681 /GEN=Cdk5 /FEA=FLmRNA /CNT=13 /TID=Rn.10749.1 /TIER=FL+Stack /STK=10 /UG=Rn.10749 /LL=140908 /DEF=Rattus norvegicus cyclin-dependent kinase 5 (Cdk5), mRNA. /PROD=cyclin-dependent kinase 5 /FL=gb:NM_080885.1 gb:L02121.1 NM_080885 cyclin-dependent kinase 5 Cdk5 140908 NM_080885 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0001963 // synaptic transmission, dopaminergic // inferred from electronic annotation /// 0001963 // synaptic transmission, dopaminergic // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0006887 // exocytosis // inferred from mutant phenotype /// 0006913 // nucleocytoplasmic transport // inferred from mutant phenotype /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007417 // central nervous system development // traceable author statement /// 0007519 // skeletal muscle tissue development // inferred from expression pattern /// 0007519 // skeletal muscle tissue development // not recorded /// 0007519 // skeletal muscle tissue development // traceable author statement /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0008045 // motor axon guidance // inferred from electronic annotation /// 0008045 // motor axon guidance // not recorded /// 0008306 // associative learning // not recorded /// 0008306 // associative learning // inferred from electronic annotation /// 0008542 // visual learning // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0009611 // response to wounding // inferred from mutant phenotype /// 0009790 // embryo development // inferred from direct assay /// 0014044 // Schwann cell development // inferred from electronic annotation /// 0014044 // Schwann cell development // not recorded /// 0016477 // cell migration // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0019233 // sensory perception of pain // not recorded /// 0021537 // telencephalon development // not recorded /// 0021537 // telencephalon development // inferred from electronic annotation /// 0021549 // cerebellum development // not recorded /// 0021549 // cerebellum development // inferred from electronic annotation /// 0021695 // cerebellar cortex development // inferred from electronic annotation /// 0021695 // cerebellar cortex development // not recorded /// 0021697 // cerebellar cortex formation // inferred from electronic annotation /// 0021697 // cerebellar cortex formation // not recorded /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0021819 // layer formation in cerebral cortex // inferred from electronic annotation /// 0021819 // layer formation in cerebral cortex // not recorded /// 0021954 // central nervous system neuron development // inferred from electronic annotation /// 0021954 // central nervous system neuron development // not recorded /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0021987 // cerebral cortex development // not recorded /// 0022038 // corpus callosum development // inferred from electronic annotation /// 0022038 // corpus callosum development // not recorded /// 0030182 // neuron differentiation // inferred from direct assay /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0030334 // regulation of cell migration // not recorded /// 0030866 // cortical actin cytoskeleton organization // inferred from mutant phenotype /// 0030900 // forebrain development // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0031397 // negative regulation of protein ubiquitination // inferred from electronic annotation /// 0031397 // negative regulation of protein ubiquitination // not recorded /// 0031914 // negative regulation of synaptic plasticity // inferred from electronic annotation /// 0031914 // negative regulation of synaptic plasticity // not recorded /// 0032801 // receptor catabolic process // inferred from electronic annotation /// 0032801 // receptor catabolic process // not recorded /// 0033136 // serine phosphorylation of STAT3 protein // inferred from electronic annotation /// 0033136 // serine phosphorylation of STAT3 protein // not recorded /// 0035249 // synaptic transmission, glutamatergic // inferred from electronic annotation /// 0035249 // synaptic transmission, glutamatergic // not recorded /// 0042220 // response to cocaine // not recorded /// 0042220 // response to cocaine // inferred from electronic annotation /// 0043113 // receptor clustering // inferred from electronic annotation /// 0043113 // receptor clustering // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from direct assay /// 0045055 // regulated secretory pathway // inferred from mutant phenotype /// 0045786 // negative regulation of cell cycle // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0045956 // positive regulation of calcium ion-dependent exocytosis // inferred from electronic annotation /// 0045956 // positive regulation of calcium ion-dependent exocytosis // not recorded /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046826 // negative regulation of protein export from nucleus // inferred from electronic annotation /// 0046826 // negative regulation of protein export from nucleus // not recorded /// 0048148 // behavioral response to cocaine // inferred from electronic annotation /// 0048148 // behavioral response to cocaine // not recorded /// 0048167 // regulation of synaptic plasticity // inferred from mutant phenotype /// 0048488 // synaptic vesicle endocytosis // inferred from mutant phenotype /// 0048675 // axon extension // traceable author statement /// 0048812 // neuron projection morphogenesis // inferred from mutant phenotype /// 0048813 // dendrite morphogenesis // inferred from electronic annotation /// 0048813 // dendrite morphogenesis // not recorded /// 0051301 // cell division // inferred from electronic annotation /// 0051402 // neuron apoptosis // inferred from mutant phenotype /// 0051402 // neuron apoptosis // not recorded /// 0051402 // neuron apoptosis // inferred from electronic annotation /// 0060078 // regulation of postsynaptic membrane potential // not recorded /// 0060078 // regulation of postsynaptic membrane potential // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016533 // cyclin-dependent protein kinase 5 holoenzyme complex // inferred from direct assay /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030054 // cell junction // traceable author statement /// 0030175 // filopodium // inferred from electronic annotation /// 0030175 // filopodium // not recorded /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0030426 // growth cone // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0044428 // nuclear part // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0002039 // p53 binding // inferred from electronic annotation /// 0002039 // p53 binding // not recorded /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // inferred from direct assay /// 0004693 // cyclin-dependent protein kinase activity // not recorded /// 0004693 // cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0005176 // ErbB-2 class receptor binding // inferred from sequence or structural similarity /// 0005176 // ErbB-2 class receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030549 // acetylcholine receptor activator activity // inferred from sequence or structural similarity /// 0030549 // acetylcholine receptor activator activity // inferred from electronic annotation /// 0043125 // ErbB-3 class receptor binding // inferred from sequence or structural similarity /// 0043125 // ErbB-3 class receptor binding // inferred from electronic annotation /// 0050321 // tau-protein kinase activity // inferred from direct assay 1368089_at NM_031079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031079.1 /DB_XREF=gi:13592020 /GEN=Pde2a /FEA=FLmRNA /CNT=11 /TID=Rn.10044.1 /TIER=FL+Stack /STK=10 /UG=Rn.10044 /LL=81743 /DEF=Rattus norvegicus cyclic GMP stimulated phosphodiesterase (Pde2a), mRNA. /PROD=cyclic GMP stimulated phosphodiesterase /FL=gb:NM_031079.1 gb:U21101.1 NM_031079 phosphodiesterase 2A, cGMP-stimulated Pde2a 81743 NM_001143847 /// NM_031079 0006198 // cAMP catabolic process // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0046069 // cGMP catabolic process // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0004118 // cGMP-stimulated cyclic-nucleotide phosphodiesterase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030552 // cAMP binding // inferred from direct assay /// 0030553 // cGMP binding // inferred from direct assay /// 0030553 // cGMP binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1368090_at NM_023976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023976.2 /DB_XREF=gi:18677711 /GEN=Prx /FEA=FLmRNA /CNT=10 /TID=Rn.10395.1 /TIER=FL+Stack /STK=10 /UG=Rn.10395 /DEF=Rattus norvegicus periaxin (Prx), mRNA. /PROD=periaxin /FL=gb:NM_023976.2 NM_023976 periaxin Prx 78960 NM_023976 0008366 // axon ensheathment // inferred from expression pattern /// 0021675 // nerve development // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043209 // myelin sheath // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1368091_at NM_053904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053904.1 /DB_XREF=gi:16758779 /GEN=Oplah /FEA=FLmRNA /CNT=10 /TID=Rn.3066.1 /TIER=FL+Stack /STK=10 /UG=Rn.3066 /LL=116684 /DEF=Rattus norvegicus 5-oxoprolinase (ATP-hydrolysing) (Oplah), mRNA. /PROD=5-oxoprolinase (ATP-hydrolysing) /FL=gb:U70825.1 gb:NM_053904.1 NM_053904 5-oxoprolinase (ATP-hydrolysing) Oplah 116684 NM_053904 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017168 // 5-oxoprolinase (ATP-hydrolyzing) activity // inferred from electronic annotation 1368092_at NM_017181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017181.1 /DB_XREF=gi:8393348 /GEN=Fah /FEA=FLmRNA /CNT=10 /TID=Rn.9195.1 /TIER=FL+Stack /STK=10 /UG=Rn.9195 /LL=29383 /DEF=Rattus norvegicus fumarylacetoacetate hydrolase (Fah), mRNA. /PROD=fumarylacetoacetate hydrolase /FL=gb:M77694.1 gb:NM_017181.1 NM_017181 fumarylacetoacetate hydrolase Fah 29383 NM_017181 0006527 // arginine catabolic process // inferred from electronic annotation /// 0006527 // arginine catabolic process // not recorded /// 0006559 // L-phenylalanine catabolic process // inferred from electronic annotation /// 0006572 // tyrosine catabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009072 // aromatic amino acid family metabolic process // inferred from electronic annotation 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004334 // fumarylacetoacetase activity // inferred from electronic annotation /// 0004334 // fumarylacetoacetase activity // not recorded /// 0004334 // fumarylacetoacetase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368093_at NM_017239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017239.1 /DB_XREF=gi:8393803 /GEN=Myh6 /FEA=FLmRNA /CNT=77 /TID=Rn.54399.1 /TIER=FL+Stack /STK=9 /UG=Rn.54399 /LL=29556 /DEF=Rattus norvegicus myosin heavy chain, polypeptide 6, cardiac muscle, alpha (Myh6), mRNA. /PROD=myosin heavy chain, polypeptide 6, cardiacmuscle, alpha /FL=gb:NM_017239.1 NM_017239 myosin, heavy chain 6, cardiac muscle, alpha Myh6 29556 NM_017239 0000302 // response to reactive oxygen species // inferred from expression pattern /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002026 // regulation of the force of heart contraction // not recorded /// 0002027 // regulation of heart rate // inferred from electronic annotation /// 0002027 // regulation of heart rate // not recorded /// 0006200 // ATP catabolic process // inferred from mutant phenotype /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006936 // muscle contraction // inferred from mutant phenotype /// 0006936 // muscle contraction // not recorded /// 0006936 // muscle contraction // inferred from electronic annotation /// 0006941 // striated muscle contraction // inferred from electronic annotation /// 0006941 // striated muscle contraction // not recorded /// 0007512 // adult heart development // inferred from electronic annotation /// 0007512 // adult heart development // not recorded /// 0007522 // visceral muscle development // inferred from electronic annotation /// 0007522 // visceral muscle development // not recorded /// 0008016 // regulation of heart contraction // not recorded /// 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008217 // regulation of blood pressure // not recorded /// 0030048 // actin filament-based movement // inferred from electronic annotation /// 0030048 // actin filament-based movement // not recorded /// 0030049 // muscle filament sliding // inferred from electronic annotation /// 0030049 // muscle filament sliding // not recorded /// 0030239 // myofibril assembly // not recorded /// 0030239 // myofibril assembly // inferred from electronic annotation /// 0043462 // regulation of ATPase activity // inferred from electronic annotation /// 0043462 // regulation of ATPase activity // not recorded /// 0045214 // sarcomere organization // inferred from electronic annotation /// 0045214 // sarcomere organization // not recorded /// 0048739 // cardiac muscle fiber development // inferred from electronic annotation /// 0048739 // cardiac muscle fiber development // not recorded /// 0055009 // atrial cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055009 // atrial cardiac muscle tissue morphogenesis // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005859 // muscle myosin complex // inferred from direct assay /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0016459 // myosin complex // not recorded /// 0016459 // myosin complex // inferred from electronic annotation /// 0030016 // myofibril // inferred from direct assay /// 0030016 // myofibril // not recorded /// 0030016 // myofibril // inferred from electronic annotation /// 0032982 // myosin filament // inferred from electronic annotation /// 0043292 // contractile fiber // inferred from mutant phenotype /// 0048471 // perinuclear region of cytoplasm // inferred from mutant phenotype 0000146 // microfilament motor activity // inferred from mutant phenotype /// 0000146 // microfilament motor activity // not recorded /// 0000146 // microfilament motor activity // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from electronic annotation /// 0008307 // structural constituent of muscle // inferred from electronic annotation /// 0008307 // structural constituent of muscle // not recorded /// 0016887 // ATPase activity // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from mutant phenotype /// 0030898 // actin-dependent ATPase activity // inferred from electronic annotation /// 0030898 // actin-dependent ATPase activity // not recorded /// 0030899 // calcium-dependent ATPase activity // inferred from mutant phenotype /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0051015 // actin filament binding // inferred from electronic annotation 1368094_at NM_024002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024002.1 /DB_XREF=gi:13027474 /GEN=Sbp2 /FEA=FLmRNA /CNT=30 /TID=Rn.25076.1 /TIER=FL+Stack /STK=9 /UG=Rn.25076 /LL=79049 /DEF=Rattus norvegicus SECIS binding protein 2 (Sbp2), mRNA. /PROD=SECIS binding protein 2 /FL=gb:NM_024002.1 NM_024002 SECIS binding protein 2 Secisbp2 79049 NM_024002 0001514 // selenocysteine incorporation // traceable author statement /// 0006412 // translation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003723 // RNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0003730 // mRNA 3'-UTR binding // not recorded /// 0003730 // mRNA 3'-UTR binding // inferred from electronic annotation /// 0008135 // translation factor activity, nucleic acid binding // traceable author statement 1368095_at NM_013218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013218.1 /DB_XREF=gi:6978478 /GEN=Ak3 /FEA=FLmRNA /CNT=25 /TID=Rn.60.1 /TIER=FL+Stack /STK=9 /UG=Rn.60 /LL=26956 /DEF=Rattus norvegicus adenylate kinase 3 (Ak3), mRNA. /PROD=adenylate kinase 3 /FL=gb:NM_013218.1 gb:D13062.1 NM_013218 adenylate kinase 3 Ak3 26956 NM_013218 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006756 // AMP phosphorylation // inferred from direct assay /// 0009165 // nucleotide biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004017 // adenylate kinase activity // inferred from direct assay /// 0004017 // adenylate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016776 // phosphotransferase activity, phosphate group as acceptor // inferred from electronic annotation /// 0019201 // nucleotide kinase activity // inferred from electronic annotation /// 0019205 // nucleobase, nucleoside, nucleotide kinase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay /// 0046899 // nucleoside triphosphate adenylate kinase activity // inferred from electronic annotation 1368096_at NM_133590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133590.1 /DB_XREF=gi:19424289 /GEN=Rab29 /FEA=FLmRNA /CNT=19 /TID=Rn.4323.1 /TIER=FL+Stack /STK=9 /UG=Rn.4323 /LL=171122 /DEF=Rattus norvegicus Ras-related GTP-binding protein Rab29 (Rab29), mRNA. /PROD=Ras-related GTP-binding protein Rab29 /FL=gb:NM_133590.1 NM_133590 RAB7, member RAS oncogene family-like 1 Rab7l1 171122 NM_133590 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation 1368097_a_at NM_053865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053865.1 /DB_XREF=gi:16758731 /GEN=Rtn1 /FEA=FLmRNA /CNT=20 /TID=Rn.55126.1 /TIER=FL+Stack /STK=9 /UG=Rn.55126 /LL=116644 /DEF=Rattus norvegicus reticulon 1 (Rtn1), mRNA. /PROD=reticulon 1 /FL=gb:U17604.1 gb:NM_053865.1 NM_053865 reticulon 1 Rtn1 116644 NM_053865 0030182 // neuron differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1368098_a_at M29294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M29294.1 /DB_XREF=gi:207007 /FEA=mRNA /CNT=1 /TID=Rn.11169.2 /TIER=ConsEnd /STK=0 /UG=Rn.11169 /LL=81781 /UG_GENE=Snrpn /UG_TITLE=small nuclear ribonucleoparticle-associated protein (snRNP) mRNA, clone Sm51 /DEF=Rat small nuclear ribonucleoparticle-associated protein (snRNP) mRNA, 3 end, clone Sm21. M29294 small nuclear ribonucleoprotein polypeptide N Snrpn 81781 NM_031117 0009725 // response to hormone stimulus // inferred from expression pattern 0005634 // nucleus // inferred from expression pattern /// 0005634 // nucleus // inferred from electronic annotation /// 0005685 // U1 snRNP // inferred from direct assay /// 0005686 // U2 snRNP // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1368099_at NM_053722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053722.1 /DB_XREF=gi:16758539 /GEN=Clasp2 /FEA=FLmRNA /CNT=17 /TID=Rn.19943.1 /TIER=FL+Stack /STK=9 /UG=Rn.19943 /LL=114514 /DEF=Rattus norvegicus CLIP-associating protein 2 (Clasp2), mRNA. /PROD=CLIP-associating protein 2 /FL=gb:NM_053722.1 NM_053722 cytoplasmic linker associated protein 2 Clasp2 114514 NM_053722 0007020 // microtubule nucleation // inferred from sequence or structural similarity /// 0007026 // negative regulation of microtubule depolymerization // inferred from direct assay /// 0007026 // negative regulation of microtubule depolymerization // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007163 // establishment or maintenance of cell polarity // not recorded /// 0016477 // cell migration // not recorded /// 0031023 // microtubule organizing center organization // inferred from sequence or structural similarity /// 0031110 // regulation of microtubule polymerization or depolymerization // not recorded /// 0034453 // microtubule anchoring // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005802 // trans-Golgi network // inferred from sequence or structural similarity /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // not recorded /// 0005938 // cell cortex // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // inferred from direct assay /// 0008017 // microtubule binding // not recorded /// 0051010 // microtubule plus-end binding // not recorded /// 0051010 // microtubule plus-end binding // inferred from sequence or structural similarity 1368100_at NM_053568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053568.1 /DB_XREF=gi:16758339 /GEN=Pcyt2 /FEA=FLmRNA /CNT=15 /TID=Rn.7291.1 /TIER=FL+Stack /STK=9 /UG=Rn.7291 /LL=89841 /DEF=Rattus norvegicus phosphate cytidylyltransferase 2, ethanolamine (Pcyt2), mRNA. /PROD=phosphate cytidylyltransferase 2, ethanolamine /FL=gb:NM_053568.1 gb:AF080568.1 NM_053568 phosphate cytidylyltransferase 2, ethanolamine Pcyt2 89841 NM_053568 0006646 // phosphatidylethanolamine biosynthetic process // traceable author statement /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004306 // ethanolamine-phosphate cytidylyltransferase activity // inferred from direct assay /// 0004306 // ethanolamine-phosphate cytidylyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1368101_at NM_012518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012518.1 /DB_XREF=gi:6978590 /GEN=Calm3 /FEA=FLmRNA /CNT=15 /TID=Rn.48841.1 /TIER=FL+Stack /STK=9 /UG=Rn.48841 /LL=24244 /DEF=Rattus norvegicus Calmodulin III (Calm3), mRNA. /PROD=calmodulin III /FL=gb:NM_012518.1 gb:M16659.1 NM_012518 calmodulin 3 Calm3 24244 NM_012518 0006936 // muscle contraction // not recorded /// 0007049 // cell cycle // not recorded /// 0032465 // regulation of cytokinesis // inferred from electronic annotation /// 0032465 // regulation of cytokinesis // not recorded /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded 0000922 // spindle pole // inferred from electronic annotation /// 0000922 // spindle pole // not recorded /// 0005576 // extracellular region // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded 0005246 // calcium channel regulator activity // non-traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0031432 // titin binding // inferred from electronic annotation /// 0031432 // titin binding // not recorded /// 0031996 // thioesterase binding // not recorded /// 0031997 // N-terminal myristoylation domain binding // inferred from electronic annotation /// 0031997 // N-terminal myristoylation domain binding // not recorded /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction /// 0048306 // calcium-dependent protein binding // inferred from physical interaction 1368102_at NM_017081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017081.1 /DB_XREF=gi:8393572 /GEN=Hsd11b2 /FEA=FLmRNA /CNT=14 /TID=Rn.10186.1 /TIER=FL+Stack /STK=9 /UG=Rn.10186 /LL=25117 /DEF=Rattus norvegicus Hydroxysteroid dehydrogenase, 11 beta type 2 (Hsd11b2), mRNA. /PROD=hydroxysteroid dehydrogenase, 11 beta type 2 /FL=gb:NM_017081.1 gb:U22424.1 NM_017081 hydroxysteroid 11-beta dehydrogenase 2 Hsd11b2 25117 NM_017081 0001666 // response to hypoxia // inferred from expression pattern /// 0002017 // regulation of blood volume by renal aldosterone // inferred from mutant phenotype /// 0006950 // response to stress // inferred from expression pattern /// 0007565 // female pregnancy // inferred from expression pattern /// 0008152 // metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0008211 // glucocorticoid metabolic process // inferred from direct assay /// 0032094 // response to food // inferred from expression pattern /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003845 // 11-beta-hydroxysteroid dehydrogenase activity // inferred from direct assay /// 0003845 // 11-beta-hydroxysteroid dehydrogenase activity // inferred from mutant phenotype /// 0005488 // binding // inferred from electronic annotation /// 0005496 // steroid binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from direct assay 1368103_at NM_053502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053502.1 /DB_XREF=gi:16758261 /GEN=Abcg1 /FEA=FLmRNA /CNT=30 /TID=Rn.8398.1 /TIER=FL+Stack /STK=9 /UG=Rn.8398 /LL=85264 /DEF=Rattus norvegicus ATP-binding cassette, sub-family G (WHITE), member 1 (Abcg1), mRNA. /PROD=ATP-binding cassette, sub-family G (WHITE),member 1 /FL=gb:NM_053502.1 NM_053502 ATP-binding cassette, sub-family G (WHITE), member 1 Abcg1 85264 NM_053502 0006810 // transport // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0010033 // response to organic substance // not recorded /// 0010872 // regulation of cholesterol esterification // inferred from electronic annotation /// 0010872 // regulation of cholesterol esterification // not recorded /// 0010875 // positive regulation of cholesterol efflux // inferred from electronic annotation /// 0010875 // positive regulation of cholesterol efflux // not recorded /// 0010888 // negative regulation of lipid storage // inferred from electronic annotation /// 0010888 // negative regulation of lipid storage // not recorded /// 0030301 // cholesterol transport // not recorded /// 0030301 // cholesterol transport // traceable author statement /// 0030301 // cholesterol transport // inferred from electronic annotation /// 0032367 // intracellular cholesterol transport // not recorded /// 0033344 // cholesterol efflux // not recorded /// 0033344 // cholesterol efflux // inferred from electronic annotation /// 0033700 // phospholipid efflux // not recorded /// 0033993 // response to lipid // not recorded /// 0034374 // low-density lipoprotein particle remodeling // inferred from electronic annotation /// 0034374 // low-density lipoprotein particle remodeling // not recorded /// 0034375 // high-density lipoprotein particle remodeling // inferred from electronic annotation /// 0034375 // high-density lipoprotein particle remodeling // not recorded /// 0034436 // glycoprotein transport // not recorded /// 0042632 // cholesterol homeostasis // not recorded /// 0042987 // amyloid precursor protein catabolic process // not recorded /// 0043691 // reverse cholesterol transport // inferred from electronic annotation /// 0043691 // reverse cholesterol transport // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045542 // positive regulation of cholesterol biosynthetic process // inferred from electronic annotation /// 0045542 // positive regulation of cholesterol biosynthetic process // not recorded /// 0055091 // phospholipid homeostasis // not recorded /// 0055099 // response to high density lipoprotein stimulus // inferred from electronic annotation /// 0055099 // response to high density lipoprotein stimulus // not recorded 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from electronic annotation /// 0055037 // recycling endosome // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005548 // phospholipid transporter activity // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0017127 // cholesterol transporter activity // not recorded /// 0019534 // toxin transporter activity // not recorded /// 0034041 // sterol-transporting ATPase activity // not recorded /// 0034437 // glycoprotein transporter activity // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043531 // ADP binding // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1368104_at NM_022589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022589.1 /DB_XREF=gi:12018245 /GEN=Tspan-2 /FEA=FLmRNA /CNT=27 /TID=Rn.5872.1 /TIER=FL+Stack /STK=9 /UG=Rn.5872 /LL=64521 /DEF=Rattus norvegicus Tspan-2 protein (Tspan-2), mRNA. /PROD=Tspan-2 protein /FL=gb:NM_022589.1 NM_022589 tetraspanin 2 Tspan2 64521 NM_022589 0010001 // glial cell differentiation // inferred from expression pattern 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0019911 // structural constituent of myelin sheath // inferred from expression pattern 1368105_at AI228231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228231 /DB_XREF=gi:3812118 /DB_XREF=EST224926 /CLONE=RBRCS19 /FEA=FLmRNA /CNT=27 /TID=Rn.5872.1 /TIER=Stack /STK=7 /UG=Rn.5872 /LL=64521 /UG_GENE=Tspan-2 /UG_TITLE=Tspan-2 protein /FL=gb:NM_022589.1 AI228231 tetraspanin 2 Tspan2 64521 NM_022589 0010001 // glial cell differentiation // inferred from expression pattern 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0019911 // structural constituent of myelin sheath // inferred from expression pattern 1368106_at NM_031821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031821.1 /DB_XREF=gi:13929171 /GEN=Snk /FEA=FLmRNA /CNT=16 /TID=Rn.12100.1 /TIER=FL+Stack /STK=9 /UG=Rn.12100 /LL=83722 /DEF=Rattus norvegicus serum-inducible kinase (Snk), mRNA. /PROD=serum-inducible kinase /FL=gb:NM_031821.1 gb:AF136583.1 NM_031821 polo-like kinase 2 (Drosophila) Plk2 83722 NM_031821 0000278 // mitotic cell cycle // inferred from electronic annotation /// 0000278 // mitotic cell cycle // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042801 // polo kinase kinase activity // inferred from electronic annotation 1368107_at NM_031316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031316.1 /DB_XREF=gi:13786133 /GEN=Prlpj /FEA=FLmRNA /CNT=16 /TID=Rn.3248.1 /TIER=FL+Stack /STK=9 /UG=Rn.3248 /LL=58937 /DEF=Rattus norvegicus prolactin-like protein J (Prlpj), mRNA. /PROD=prolactin-like protein J /FL=gb:NM_031316.1 gb:AB019119.1 gb:AF150741.1 gb:AB019945.1 NM_031316 Prolactin family 3, subfamily c, member 1 Prl3c1 58937 NM_031316 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // traceable author statement /// 0005179 // hormone activity // inferred from electronic annotation 1368108_at NM_058213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_058213.1 /DB_XREF=gi:17157986 /GEN=Atp2a1 /FEA=FLmRNA /CNT=13 /TID=Rn.10833.1 /TIER=FL+Stack /STK=9 /UG=Rn.10833 /LL=116601 /DEF=Rattus norvegicus ATPase, Ca++ transporting, cardiac muscle, fast twitch 1 (Atp2a1), mRNA. /PROD=ATPase, Ca++ transporting, cardiac muscle, fasttwitch 1 /FL=gb:NM_058213.1 NM_058213 ATPase, Ca++ transporting, cardiac muscle, fast twitch 1 Atp2a1 116601 NM_058213 0006200 // ATP catabolic process // inferred from sequence or structural similarity /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // not recorded /// 0006816 // calcium ion transport // inferred from sequence or structural similarity /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006937 // regulation of muscle contraction // traceable author statement /// 0006942 // regulation of striated muscle contraction // not recorded /// 0006942 // regulation of striated muscle contraction // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0008637 // apoptotic mitochondrial changes // not recorded /// 0031448 // positive regulation of fast-twitch skeletal muscle fiber contraction // not recorded /// 0031448 // positive regulation of fast-twitch skeletal muscle fiber contraction // inferred from sequence or structural similarity /// 0032470 // elevation of endoplasmic reticulum calcium ion concentration // not recorded /// 0032471 // reduction of endoplasmic reticulum calcium ion concentration // not recorded /// 0034976 // response to endoplasmic reticulum stress // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0045988 // negative regulation of striated muscle contraction // not recorded /// 0045988 // negative regulation of striated muscle contraction // inferred from sequence or structural similarity /// 0051561 // elevation of mitochondrial calcium ion concentration // not recorded /// 0051659 // maintenance of mitochondrion location // not recorded /// 0070059 // apoptosis in response to endoplasmic reticulum stress // not recorded /// 0070509 // calcium ion import // not recorded /// 0090076 // relaxation of skeletal muscle // not recorded 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005793 // ER-Golgi intermediate compartment // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // not recorded /// 0016529 // sarcoplasmic reticulum // inferred from sequence or structural similarity /// 0016529 // sarcoplasmic reticulum // traceable author statement /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0031673 // H zone // not recorded /// 0031673 // H zone // inferred from sequence or structural similarity /// 0031674 // I band // not recorded /// 0031674 // I band // inferred from sequence or structural similarity /// 0033017 // sarcoplasmic reticulum membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005338 // nucleotide-sugar transmembrane transporter activity // inferred from direct assay /// 0005388 // calcium-transporting ATPase activity // inferred from direct assay /// 0005388 // calcium-transporting ATPase activity // inferred from mutant phenotype /// 0005388 // calcium-transporting ATPase activity // not recorded /// 0005388 // calcium-transporting ATPase activity // inferred from sequence or structural similarity /// 0005388 // calcium-transporting ATPase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1368109_at NM_031337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031337.1 /DB_XREF=gi:13786169 /GEN=Siat9 /FEA=FLmRNA /CNT=16 /TID=Rn.22706.1 /TIER=FL+Stack /STK=9 /UG=Rn.22706 /LL=83505 /DEF=Rattus norvegicus sialyltransferase 9 (CMP-NeuAc:lactosylceramide alpha-2,3-sialyltransferase; GM3 synthase) (Siat9), mRNA. /PROD=sialyltransferase 9 (CMP-NeuAc:lactosylceramidealpha-2,3-sialyltransferase; GM3 synthase) /FL=gb:AB018049.1 gb:NM_031337.1 NM_031337 ST3 beta-galactoside alpha-2,3-sialyltransferase 5 St3gal5 83505 NM_031337 0006486 // protein glycosylation // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation 0008373 // sialyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0047291 // lactosylceramide alpha-2,3-sialyltransferase activity // not recorded /// 0047291 // lactosylceramide alpha-2,3-sialyltransferase activity // inferred from sequence or structural similarity /// 0047291 // lactosylceramide alpha-2,3-sialyltransferase activity // inferred from electronic annotation 1368110_a_at AB016962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB016962.1 /DB_XREF=gi:4417206 /GEN=synGAP-d /FEA=FLmRNA /CNT=15 /TID=Rn.9908.1 /TIER=FL /STK=1 /UG=Rn.9908 /LL=84551 /DEF=Rattus norvegicus mRNA for synGAP-d, complete cds. /PROD=synGAP-d /FL=gb:AB024400.1 gb:NM_053442.1 gb:AB016962.1 AB016962 synaptic Ras GTPase activating protein 1 homolog (rat) Syngap1 192117 NM_001113409 /// NM_181092 0007165 // signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded /// 0007389 // pattern specification process // not recorded /// 0008542 // visual learning // not recorded /// 0016358 // dendrite development // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043113 // receptor clustering // not recorded /// 0043408 // regulation of MAPKKK cascade // not recorded /// 0048169 // regulation of long-term neuronal synaptic plasticity // not recorded /// 0050771 // negative regulation of axonogenesis // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0050803 // regulation of synapse structure and activity // not recorded /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0043198 // dendritic shaft // not recorded /// 0045202 // synapse // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // not recorded /// 0005515 // protein binding // not recorded /// 0017124 // SH3 domain binding // inferred from electronic annotation 1368111_at NM_134403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134403.1 /DB_XREF=gi:19705528 /GEN=Cca3 /FEA=FLmRNA /CNT=12 /TID=Rn.11149.1 /TIER=FL+Stack /STK=9 /UG=Rn.11149 /LL=171440 /DEF=Rattus norvegicus Cca3 protein (Cca3), mRNA. /PROD=Cca3 protein /FL=gb:AB000216.1 gb:NM_134403.1 NM_134403 ankyrin repeat and BTB (POZ) domain containing 2 Abtb2 171440 NM_134403 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1368112_at NM_013023 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013023.1 /DB_XREF=gi:6981499 /GEN=Sag /FEA=FLmRNA /CNT=12 /TID=Rn.9856.1 /TIER=FL+Stack /STK=9 /UG=Rn.9856 /LL=25539 /DEF=Rattus norvegicus S-antigen (Sag), mRNA. /PROD=S-antigen /FL=gb:M60737.1 gb:NM_013023.1 NM_013023 S-antigen; retina and pineal gland (arrestin) Sag 25539 NM_013023 0007165 // signal transduction // inferred from electronic annotation /// 0007600 // sensory perception // inferred from electronic annotation /// 0007601 // visual perception // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0002046 // opsin binding // inferred from electronic annotation /// 0002046 // opsin binding // not recorded /// 0051219 // phosphoprotein binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // not recorded 1368113_at NM_053844 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053844.1 /DB_XREF=gi:16758701 /GEN=Tff2 /FEA=FLmRNA /CNT=12 /TID=Rn.34367.1 /TIER=FL+Stack /STK=9 /UG=Rn.34367 /LL=116592 /DEF=Rattus norvegicus trefoil factor 2 (spasmolytic protein 1) (Tff2), mRNA. /PROD=trefoil factor 2 (spasmolytic protein 1) /FL=gb:M97255.1 gb:NM_053844.1 NM_053844 trefoil factor 2 Tff2 116592 NM_053844 0005576 // extracellular region // inferred from electronic annotation 0005198 // structural molecule activity // non-traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation 1368114_at NM_053428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053428.1 /DB_XREF=gi:16758167 /GEN=Fgf13 /FEA=FLmRNA /CNT=24 /TID=Rn.15709.1 /TIER=FL+Stack /STK=9 /UG=Rn.15709 /LL=84488 /DEF=Rattus norvegicus fibroblast growth factor 13 (Fgf13), mRNA. /PROD=fibroblast growth factor 13 /FL=gb:AF271786.1 gb:NM_053428.1 NM_053428 fibroblast growth factor 13 Fgf13 84488 NM_053428 0000165 // MAPKKK cascade // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0030295 // protein kinase activator activity // not recorded 1368115_at NM_031700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031700.1 /DB_XREF=gi:13928977 /GEN=Cldn3 /FEA=FLmRNA /CNT=20 /TID=Rn.4513.1 /TIER=FL+Stack /STK=9 /UG=Rn.4513 /LL=65130 /DEF=Rattus norvegicus claudin 3 (Cldn3), mRNA. /PROD=claudin 3 /FL=gb:M74067.1 gb:NM_031700.1 NM_031700 claudin 3 Cldn3 65130 NM_031700 0001666 // response to hypoxia // not recorded /// 0016338 // calcium-independent cell-cell adhesion // not recorded /// 0016338 // calcium-independent cell-cell adhesion // inferred from sequence or structural similarity 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from direct assay /// 0005923 // tight junction // not recorded /// 0005923 // tight junction // inferred from sequence or structural similarity /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from sequence or structural similarity 1368116_a_at M57428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M57428.1 /DB_XREF=gi:206839 /GEN=S6 kinase /FEA=mRNA /CNT=1 /TID=Rn.4042.2 /TIER=ConsEnd /STK=0 /UG=Rn.4042 /LL=83840 /DEF=Rat S6 kinase mRNA, compelete cds. /PROD=S6 kinase M57428 ribosomal protein S6 kinase, 70kDa, polypeptide 1 Rps6kb1 83840 NM_031985 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0003009 // skeletal muscle contraction // inferred from expression pattern /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007281 // germ cell development // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0007616 // long-term memory // inferred from expression pattern /// 0009408 // response to heat // inferred from expression pattern /// 0009611 // response to wounding // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009636 // response to toxin // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014732 // skeletal muscle atrophy // inferred from expression pattern /// 0014878 // response to electrical stimulus involved in regulation of muscle adaptation // inferred from expression pattern /// 0014911 // positive regulation of smooth muscle cell migration // inferred from mutant phenotype /// 0016477 // cell migration // inferred from expression pattern /// 0031929 // TOR signaling cascade // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0032868 // response to insulin stimulus // inferred from mutant phenotype /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0033762 // response to glucagon stimulus // inferred from expression pattern /// 0034612 // response to tumor necrosis factor // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043201 // response to leucine // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0043491 // protein kinase B signaling cascade // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from expression pattern /// 0045727 // positive regulation of translation // not recorded /// 0045727 // positive regulation of translation // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // not recorded /// 0045948 // positive regulation of translational initiation // inferred from electronic annotation /// 0045948 // positive regulation of translational initiation // not recorded /// 0046324 // regulation of glucose import // inferred from mutant phenotype /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from mutant phenotype /// 0048633 // positive regulation of skeletal muscle tissue growth // inferred from mutant phenotype /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004711 // ribosomal protein S6 kinase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay 1368117_at NM_022865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022865.1 /DB_XREF=gi:12408325 /GEN=Gphn /FEA=FLmRNA /CNT=13 /TID=Rn.11032.1 /TIER=FL+Stack /STK=9 /UG=Rn.11032 /LL=64845 /DEF=Rattus norvegicus Gephyrin (Gphn), mRNA. /PROD=gephyrin /FL=gb:NM_022865.1 NM_022865 gephyrin Gphn 64845 NM_022865 0006605 // protein targeting // traceable author statement /// 0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from electronic annotation /// 0007416 // synapse assembly // inferred from expression pattern /// 0007529 // establishment of synaptic specificity at neuromuscular junction // not recorded /// 0032324 // molybdopterin cofactor biosynthetic process // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from direct assay 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0015631 // tubulin binding // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0030674 // protein binding, bridging // traceable author statement /// 0032947 // protein complex scaffold // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1368118_at NM_031328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031328.1 /DB_XREF=gi:13786151 /GEN=Bcl10 /FEA=FLmRNA /CNT=13 /TID=Rn.13007.1 /TIER=FL+Stack /STK=9 /UG=Rn.13007 /LL=83477 /DEF=Rattus norvegicus B-cell CLLlymphoma 10 (Bcl10), mRNA. /PROD=B-cell CLLlymphoma 10 /FL=gb:AB016069.1 gb:NM_031328.1 NM_031328 B-cell CLL/lymphoma 10 Bcl10 83477 NM_031328 0001843 // neural tube closure // not recorded /// 0001843 // neural tube closure // inferred from sequence or structural similarity /// 0001843 // neural tube closure // inferred from electronic annotation /// 0002237 // response to molecule of bacterial origin // not recorded /// 0002237 // response to molecule of bacterial origin // inferred from sequence or structural similarity /// 0002237 // response to molecule of bacterial origin // inferred from electronic annotation /// 0002906 // negative regulation of mature B cell apoptosis // not recorded /// 0002906 // negative regulation of mature B cell apoptosis // inferred from sequence or structural similarity /// 0002906 // negative regulation of mature B cell apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from direct assay /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from sequence or structural similarity /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from direct assay /// 0006968 // cellular defense response // inferred from electronic annotation /// 0006968 // cellular defense response // not recorded /// 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded /// 0007249 // I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0008219 // cell death // not recorded /// 0008219 // cell death // inferred from sequence or structural similarity /// 0008219 // cell death // inferred from electronic annotation /// 0009620 // response to fungus // inferred from electronic annotation /// 0009620 // response to fungus // not recorded /// 0016064 // immunoglobulin mediated immune response // inferred from electronic annotation /// 0016064 // immunoglobulin mediated immune response // not recorded /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0031398 // positive regulation of protein ubiquitination // inferred from sequence or structural similarity /// 0031398 // positive regulation of protein ubiquitination // inferred from electronic annotation /// 0042221 // response to chemical stimulus // not recorded /// 0042221 // response to chemical stimulus // inferred from sequence or structural similarity /// 0042221 // response to chemical stimulus // inferred from electronic annotation /// 0042327 // positive regulation of phosphorylation // not recorded /// 0042327 // positive regulation of phosphorylation // inferred from sequence or structural similarity /// 0042327 // positive regulation of phosphorylation // inferred from electronic annotation /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from sequence or structural similarity /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0045087 // innate immune response // not recorded /// 0045087 // innate immune response // inferred from sequence or structural similarity /// 0045087 // innate immune response // inferred from electronic annotation /// 0045416 // positive regulation of interleukin-8 biosynthetic process // not recorded /// 0045416 // positive regulation of interleukin-8 biosynthetic process // inferred from sequence or structural similarity /// 0045416 // positive regulation of interleukin-8 biosynthetic process // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // not recorded /// 0050852 // T cell receptor signaling pathway // inferred from sequence or structural similarity /// 0050852 // T cell receptor signaling pathway // inferred from electronic annotation /// 0050856 // regulation of T cell receptor signaling pathway // inferred from electronic annotation /// 0050856 // regulation of T cell receptor signaling pathway // not recorded /// 0050870 // positive regulation of T cell activation // inferred from electronic annotation /// 0050870 // positive regulation of T cell activation // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051259 // protein oligomerization // not recorded /// 0051259 // protein oligomerization // inferred from sequence or structural similarity /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded /// 0051260 // protein homooligomerization // inferred from sequence or structural similarity /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from physical interaction 0001772 // immunological synapse // inferred from electronic annotation /// 0001772 // immunological synapse // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from sequence or structural similarity /// 0005764 // lysosome // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0042101 // T cell receptor complex // not recorded /// 0042101 // T cell receptor complex // inferred from sequence or structural similarity /// 0042101 // T cell receptor complex // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from sequence or structural similarity /// 0043234 // protein complex // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded /// 0046696 // lipopolysaccharide receptor complex // not recorded /// 0046696 // lipopolysaccharide receptor complex // inferred from sequence or structural similarity /// 0046696 // lipopolysaccharide receptor complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003713 // transcription coactivator activity // not recorded /// 0003713 // transcription coactivator activity // inferred from sequence or structural similarity /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008022 // protein C-terminus binding // inferred from sequence or structural similarity /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from sequence or structural similarity /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0019209 // kinase activator activity // not recorded /// 0019209 // kinase activator activity // inferred from sequence or structural similarity /// 0019209 // kinase activator activity // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019900 // kinase binding // not recorded /// 0019900 // kinase binding // inferred from sequence or structural similarity /// 0019900 // kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from sequence or structural similarity /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0043130 // ubiquitin binding // not recorded /// 0043130 // ubiquitin binding // inferred from sequence or structural similarity /// 0043130 // ubiquitin binding // inferred from electronic annotation /// 0043422 // protein kinase B binding // not recorded /// 0043422 // protein kinase B binding // inferred from sequence or structural similarity /// 0043422 // protein kinase B binding // inferred from electronic annotation /// 0043621 // protein self-association // not recorded /// 0043621 // protein self-association // inferred from sequence or structural similarity /// 0043621 // protein self-association // inferred from electronic annotation /// 0051059 // NF-kappaB binding // not recorded /// 0051059 // NF-kappaB binding // inferred from sequence or structural similarity /// 0051059 // NF-kappaB binding // inferred from electronic annotation 1368119_at NM_133562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133562.1 /DB_XREF=gi:19424245 /GEN=Pib5pa /FEA=FLmRNA /CNT=12 /TID=Rn.23872.1 /TIER=FL+Stack /STK=9 /UG=Rn.23872 /LL=171088 /DEF=Rattus norvegicus phosphatidylinositol (4,5) bisphosphate 5-phosphatase, A (Pib5pa), mRNA. /PROD=phosphatidylinositol (4,5) bisphosphate5-phosphatase, A /FL=gb:NM_133562.1 gb:AB032551.1 NM_133562 inositol polyphosphate-5-phosphatase J Inpp5j 171088 NM_133562 0010977 // negative regulation of neuron projection development // inferred from mutant phenotype /// 0010977 // negative regulation of neuron projection development // not recorded /// 0010977 // negative regulation of neuron projection development // inferred from electronic annotation /// 0016311 // dephosphorylation // not recorded /// 0031115 // negative regulation of microtubule polymerization // inferred from mutant phenotype /// 0033137 // negative regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033137 // negative regulation of peptidyl-serine phosphorylation // not recorded 0001726 // ruffle // inferred from direct assay /// 0001726 // ruffle // not recorded /// 0001726 // ruffle // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0030426 // growth cone // inferred from direct assay /// 0030426 // growth cone // not recorded /// 0030426 // growth cone // inferred from electronic annotation /// 0043198 // dendritic shaft // inferred from electronic annotation /// 0043198 // dendritic shaft // not recorded 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0004445 // inositol-polyphosphate 5-phosphatase activity // inferred from direct assay /// 0004445 // inositol-polyphosphate 5-phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0034485 // phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity // inferred from electronic annotation /// 0034485 // phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity // not recorded 1368120_at NM_031069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031069.1 /DB_XREF=gi:13592010 /GEN=Nell1 /FEA=FLmRNA /CNT=12 /TID=Rn.10695.1 /TIER=FL+Stack /STK=9 /UG=Rn.10695 /LL=81733 /DEF=Rattus norvegicus protein kinase C-binding protein NELL1 (Nell1), mRNA. /PROD=protein kinase C-binding protein NELL1 /FL=gb:NM_031069.1 gb:U48246.1 NM_031069 NEL-like 1 (chicken) Nell1 81733 NM_031069 0006917 // induction of apoptosis // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from electronic annotation /// 0045667 // regulation of osteoblast differentiation // inferred from mutant phenotype /// 0045778 // positive regulation of ossification // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from mutant phenotype 0005080 // protein kinase C binding // inferred from mutant phenotype /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1368121_at NM_013215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013215.1 /DB_XREF=gi:7106239 /GEN=AFAR /FEA=FLmRNA /CNT=11 /TID=Rn.6043.1 /TIER=FL+Stack /STK=9 /UG=Rn.6043 /LL=26760 /DEF=Rattus norvegicus aflatoxin B1 aldehyde reductase (AFAR), mRNA. /PROD=aflatoxin B1 aldehyde reductase /FL=gb:AF045464.1 gb:NM_013215.1 NM_013215 aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase) Akr7a3 26760 NM_013215 0009636 // response to toxin // inferred from electronic annotation /// 0046222 // aflatoxin metabolic process // inferred from direct assay /// 0046223 // aflatoxin catabolic process // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004032 // aldehyde reductase activity // inferred from direct assay /// 0004033 // aldo-keto reductase activity // inferred from mutant phenotype /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1368122_at NM_053438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053438.1 /DB_XREF=gi:16758179 /GEN=Zfp103 /FEA=FLmRNA /CNT=20 /TID=Rn.45685.1 /TIER=FL+Stack /STK=9 /UG=Rn.45685 /LL=84508 /DEF=Rattus norvegicus zinc finger protein 103 (Zfp103), mRNA. /PROD=zinc finger protein 103 /FL=gb:AF306394.1 gb:NM_053438.1 NM_053438 ring finger protein 103 Rnf103 84508 NM_053438 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from sequence or structural similarity /// 0030433 // ER-associated protein catabolic process // not recorded 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368123_at NM_052807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_052807.1 /DB_XREF=gi:16258822 /GEN=Igf1r /FEA=FLmRNA /CNT=12 /TID=Rn.10957.1 /TIER=FL+Stack /STK=9 /UG=Rn.10957 /LL=25718 /DEF=Rattus norvegicus Insulin-like growth factor 1 receptor (Igf1r), mRNA. /PROD=insulin-like growth factor 1 receptor /FL=gb:L29232.1 gb:NM_052807.1 NM_052807 insulin-like growth factor 1 receptor Igf1r 25718 NM_052807 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0006955 // immune response // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from mutant phenotype /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0030010 // establishment of cell polarity // inferred from mutant phenotype /// 0030238 // male sex determination // inferred from electronic annotation /// 0030238 // male sex determination // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0030879 // mammary gland development // not recorded /// 0031017 // exocrine pancreas development // inferred from electronic annotation /// 0031017 // exocrine pancreas development // not recorded /// 0031175 // neuron projection development // inferred from direct assay /// 0032467 // positive regulation of cytokinesis // inferred from mutant phenotype /// 0033197 // response to vitamin E // inferred from expression pattern /// 0043409 // negative regulation of MAPKKK cascade // inferred from electronic annotation /// 0043409 // negative regulation of MAPKKK cascade // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // not recorded /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from sequence or structural similarity /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0048009 // insulin-like growth factor receptor signaling pathway // not recorded /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // not recorded /// 0051054 // positive regulation of DNA metabolic process // inferred from mutant phenotype /// 0051262 // protein tetramerization // not recorded /// 0051262 // protein tetramerization // inferred from sequence or structural similarity /// 0051262 // protein tetramerization // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051897 // positive regulation of protein kinase B signaling cascade // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded /// 0051898 // negative regulation of protein kinase B signaling cascade // inferred from electronic annotation /// 0051898 // negative regulation of protein kinase B signaling cascade // not recorded /// 0060740 // prostate gland epithelium morphogenesis // inferred from electronic annotation /// 0060740 // prostate gland epithelium morphogenesis // not recorded 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from sequence or structural similarity /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005010 // insulin-like growth factor receptor activity // not recorded /// 0005010 // insulin-like growth factor receptor activity // inferred from sequence or structural similarity /// 0005010 // insulin-like growth factor receptor activity // traceable author statement /// 0005010 // insulin-like growth factor receptor activity // inferred from electronic annotation /// 0005158 // insulin receptor binding // inferred from electronic annotation /// 0005158 // insulin receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005520 // insulin-like growth factor binding // not recorded /// 0005520 // insulin-like growth factor binding // inferred from sequence or structural similarity /// 0005520 // insulin-like growth factor binding // traceable author statement /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0031994 // insulin-like growth factor I binding // inferred from electronic annotation /// 0031994 // insulin-like growth factor I binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0043548 // phosphoinositide 3-kinase binding // not recorded /// 0043548 // phosphoinositide 3-kinase binding // inferred from sequence or structural similarity /// 0043548 // phosphoinositide 3-kinase binding // inferred from electronic annotation /// 0043559 // insulin binding // inferred from electronic annotation /// 0043559 // insulin binding // not recorded /// 0043560 // insulin receptor substrate binding // inferred from physical interaction /// 0043560 // insulin receptor substrate binding // not recorded /// 0043560 // insulin receptor substrate binding // inferred from sequence or structural similarity /// 0043560 // insulin receptor substrate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368124_at NM_133578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133578.1 /DB_XREF=gi:19424267 /GEN=Cpg21 /FEA=FLmRNA /CNT=12 /TID=Rn.10877.1 /TIER=FL+Stack /STK=9 /UG=Rn.10877 /LL=171109 /DEF=Rattus norvegicus MAP-kinase phosphatase (cpg21) (Cpg21), mRNA. /PROD=MAP-kinase phosphatase (cpg21) /FL=gb:AF013144.1 gb:NM_133578.1 NM_133578 dual specificity phosphatase 5 Dusp5 171109 NM_133578 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0016481 // negative regulation of transcription // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // inferred from direct assay /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation 1368125_at NM_019229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019229.1 /DB_XREF=gi:9507106 /GEN=Slc12a4 /FEA=FLmRNA /CNT=11 /TID=Rn.32091.1 /TIER=FL+Stack /STK=9 /UG=Rn.32091 /LL=29501 /DEF=Rattus norvegicus solute carrier family 12, member 4 (Slc12a4), mRNA. /PROD=solute carrier family 12, member 4 /FL=gb:NM_019229.1 gb:U55815.1 NM_019229 solute carrier family 12 (potassium/chloride transporters), member 4 Slc12a4 29501 NM_019229 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0015377 // cation:chloride symporter activity // inferred from electronic annotation 1368126_at NM_023104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023104.1 /DB_XREF=gi:12831226 /GEN=LOC65984 /FEA=FLmRNA /CNT=11 /TID=Rn.9215.1 /TIER=FL+Stack /STK=9 /UG=Rn.9215 /LL=65984 /DEF=Rattus norvegicus acetoacetyl-CoA synthetase (LOC65984), mRNA. /PROD=acetoacetyl-CoA synthetase /FL=gb:AB026291.1 gb:NM_023104.1 NM_023104 acetoacetyl-CoA synthetase Aacs 65984 NM_023104 0001889 // liver development // inferred from direct assay /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0010243 // response to organic nitrogen // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0014074 // response to purine // inferred from expression pattern /// 0032024 // positive regulation of insulin secretion // inferred from mutant phenotype /// 0034201 // response to oleic acid // inferred from direct assay /// 0042493 // response to drug // inferred from direct assay /// 0042594 // response to starvation // inferred from expression pattern /// 0045471 // response to ethanol // inferred from direct assay /// 0050872 // white fat cell differentiation // inferred from expression pattern /// 0060612 // adipose tissue development // inferred from expression pattern /// 0071333 // cellular response to glucose stimulus // inferred from mutant phenotype /// 0071394 // cellular response to testosterone stimulus // inferred from expression pattern /// 0071397 // cellular response to cholesterol // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement /// 0005829 // cytosol // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030729 // acetoacetate-CoA ligase activity // inferred from direct assay /// 0030729 // acetoacetate-CoA ligase activity // non-traceable author statement /// 0030729 // acetoacetate-CoA ligase activity // inferred from electronic annotation /// 0047760 // butyrate-CoA ligase activity // inferred from direct assay 1368127_at NM_017130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017130.1 /DB_XREF=gi:8393827 /GEN=Neu2 /FEA=FLmRNA /CNT=11 /TID=Rn.9731.1 /TIER=FL+Stack /STK=9 /UG=Rn.9731 /LL=29204 /DEF=Rattus norvegicus neuraminidase 2 (Neu2), mRNA. /PROD=neuraminidase 2 /FL=gb:NM_017130.1 gb:D16300.1 NM_017130 sialidase 2 (cytosolic sialidase) Neu2 29204 NM_017130 0008152 // metabolic process // inferred from electronic annotation /// 0010831 // positive regulation of myotube differentiation // inferred from mutant phenotype /// 0045471 // response to ethanol // inferred from expression pattern /// 0045663 // positive regulation of myoblast differentiation // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0004308 // exo-alpha-sialidase activity // inferred from direct assay /// 0004308 // exo-alpha-sialidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation 1368128_at NM_031598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031598.1 /DB_XREF=gi:13928813 /GEN=Pla2g2a /FEA=FLmRNA /CNT=11 /TID=Rn.11346.1 /TIER=FL+Stack /STK=9 /UG=Rn.11346 /LL=29692 /DEF=Rattus norvegicus phospholipase A2, group IIA (platelets, synovial fluid) (Pla2g2a), mRNA. /PROD=phospholipase A2, group IIA (platelets, synovialfluid) /FL=gb:D00523.1 gb:NM_031598.1 gb:M25148.1 NM_031598 phospholipase A2, group IIA (platelets, synovial fluid) Pla2g2a 29692 NM_031598 0006644 // phospholipid metabolic process // inferred from direct assay /// 0006644 // phospholipid metabolic process // not recorded /// 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0016042 // lipid catabolic process // traceable author statement /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0035019 // somatic stem cell maintenance // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0046473 // phosphatidic acid metabolic process // inferred from electronic annotation /// 0046473 // phosphatidic acid metabolic process // not recorded /// 0050678 // regulation of epithelial cell proliferation // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay 0004623 // phospholipase A2 activity // not recorded /// 0004623 // phospholipase A2 activity // traceable author statement /// 0004623 // phospholipase A2 activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005543 // phospholipid binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047498 // calcium-dependent phospholipase A2 activity // inferred from direct assay 1368129_at NM_031647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031647.1 /DB_XREF=gi:13928893 /GEN=Sfmbt /FEA=FLmRNA /CNT=10 /TID=Rn.14839.1 /TIER=FL+Stack /STK=9 /UG=Rn.14839 /LL=58967 /DEF=Rattus norvegicus Scm-related gene containing four mbt domains (Sfmbt), mRNA. /PROD=Scm-related gene containing four mbt domains /FL=gb:AB032164.1 gb:NM_031647.1 NM_031647 Scm-like with four mbt domains 1 Sfmbt1 58967 NM_031647 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1368130_at NM_031972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031972.1 /DB_XREF=gi:14010868 /GEN=Aldh3a1 /FEA=FLmRNA /CNT=10 /TID=Rn.9810.1 /TIER=FL+Stack /STK=9 /UG=Rn.9810 /LL=25375 /DEF=Rattus norvegicus Aldehyde dehydrogenase class 3 (Aldh3a1), mRNA. /PROD=Aldehyde dehydrogenase class 3 /FL=gb:NM_031972.1 gb:J03637.1 NM_031972 aldehyde dehydrogenase 3 family, member A1 Aldh3a1 25375 NM_031972 0001666 // response to hypoxia // inferred from direct assay /// 0006081 // cellular aldehyde metabolic process // not recorded /// 0006081 // cellular aldehyde metabolic process // inferred from sequence or structural similarity /// 0006081 // cellular aldehyde metabolic process // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0042493 // response to drug // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from direct assay /// 0051591 // response to cAMP // inferred from direct assay /// 0055114 // oxidation reduction // not recorded /// 0055114 // oxidation reduction // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005829 // cytosol // inferred from direct assay 0004028 // 3-chloroallyl aldehyde dehydrogenase activity // inferred from direct assay /// 0004028 // 3-chloroallyl aldehyde dehydrogenase activity // not recorded /// 0004028 // 3-chloroallyl aldehyde dehydrogenase activity // inferred from electronic annotation /// 0004029 // aldehyde dehydrogenase (NAD) activity // not recorded /// 0004029 // aldehyde dehydrogenase (NAD) activity // inferred from sequence or structural similarity /// 0004030 // aldehyde dehydrogenase [NAD(P)+] activity // inferred from electronic annotation /// 0008106 // alcohol dehydrogenase (NADP+) activity // not recorded /// 0008106 // alcohol dehydrogenase (NADP+) activity // inferred from sequence or structural similarity /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016620 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor // not recorded /// 0016620 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor // inferred from electronic annotation 1368131_at NM_031808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031808.1 /DB_XREF=gi:13929145 /GEN=Capn6 /FEA=FLmRNA /CNT=12 /TID=Rn.2862.1 /TIER=FL+Stack /STK=9 /UG=Rn.2862 /LL=83685 /DEF=Rattus norvegicus calpain 6 (Capn6), mRNA. /PROD=calpain 6 /FL=gb:NM_031808.1 gb:AF067793.1 NM_031808 calpain 6 Capn6 83685 NM_031808 0006508 // proteolysis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0004198 // calcium-dependent cysteine-type endopeptidase activity // inferred from electronic annotation 1368132_at NM_133317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133317.1 /DB_XREF=gi:18959263 /GEN=Tob1 /FEA=FLmRNA /CNT=11 /TID=Rn.7819.1 /TIER=FL+Stack /STK=9 /UG=Rn.7819 /DEF=Rattus norvegicus transducer of ERBB2, 1 (Tob1), mRNA. /PROD=transducer of ERBB2, 1 /FL=gb:AF349723.1 gb:NM_133317.1 NM_133317 transducer of ErbB-2.1 Tob1 170842 NM_133317 0007184 // SMAD protein nuclear translocation // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0045668 // negative regulation of osteoblast differentiation // not recorded 0005737 // cytoplasm // not recorded 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0046332 // SMAD binding // not recorded 1368133_at NM_019196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019196.1 /DB_XREF=gi:9506900 /GEN=Mpdz /FEA=FLmRNA /CNT=10 /TID=Rn.6684.1 /TIER=FL+Stack /STK=9 /UG=Rn.6684 /LL=29365 /DEF=Rattus norvegicus multiple PDZ domain protein (Mpdz), mRNA. /PROD=multiple PDZ domain protein /FL=gb:NM_019196.1 NM_019196 multiple PDZ domain protein Mpdz 29365 NM_019196 0007155 // cell adhesion // not recorded /// 0023034 // intracellular signaling pathway // traceable author statement /// 0042552 // myelination // inferred from physical interaction 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0005923 // tight junction // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded 1368134_a_at NM_133380 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133380.1 /DB_XREF=gi:19173731 /GEN=Il4r /FEA=FLmRNA /CNT=10 /TID=Rn.10471.1 /TIER=FL+Stack /STK=9 /UG=Rn.10471 /LL=25084 /DEF=Rattus norvegicus Interleukin 4 receptor (Il4r), mRNA. /PROD=interleukin 4 receptor /FL=gb:AB015746.1 gb:NM_133380.1 NM_133380 interleukin 4 receptor, alpha Il4ra 25084 NM_133380 0006954 // inflammatory response // traceable author statement /// 0006955 // immune response // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from direct assay /// 0045626 // negative regulation of T-helper 1 cell differentiation // inferred from electronic annotation /// 0045626 // negative regulation of T-helper 1 cell differentiation // not recorded /// 0045630 // positive regulation of T-helper 2 cell differentiation // inferred from electronic annotation /// 0045630 // positive regulation of T-helper 2 cell differentiation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004913 // interleukin-4 receptor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046982 // protein heterodimerization activity // traceable author statement 1368135_at NM_021595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021595.1 /DB_XREF=gi:11024675 /GEN=Ninj2 /FEA=FLmRNA /CNT=10 /TID=Rn.35505.1 /TIER=FL+Stack /STK=9 /UG=Rn.35505 /LL=59115 /DEF=Rattus norvegicus ninjurin2 (Ninj2), mRNA. /PROD=ninjurin2 /FL=gb:AF250322.1 gb:AB040815.1 gb:NM_021595.1 NM_021595 ninjurin 2 Ninj2 59115 NM_021595 0007155 // cell adhesion // inferred from electronic annotation /// 0042246 // tissue regeneration // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1368136_at NM_012887 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012887.1 /DB_XREF=gi:6981659 /GEN=Tmpo /FEA=FLmRNA /CNT=51 /TID=Rn.3364.1 /TIER=FL+Stack /STK=8 /UG=Rn.3364 /LL=25359 /DEF=Rattus norvegicus Thymopoietin (lamina associated polypeptide 2) (Tmpo), mRNA. /PROD=thymopoietin (lamina associated polypeptide 2) /FL=gb:U18314.1 gb:NM_012887.1 NM_012887 thymopoietin Tmpo 25359 NM_012887 0031468 // nuclear envelope reassembly // non-traceable author statement /// 0045449 // regulation of transcription // not recorded 0000785 // chromatin // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005637 // nuclear inner membrane // inferred from direct assay /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005521 // lamin binding // traceable author statement 1368137_at NM_017212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017212.1 /DB_XREF=gi:8393751 /GEN=Mapt /FEA=FLmRNA /CNT=55 /TID=Rn.2455.1 /TIER=FL+Stack /STK=8 /UG=Rn.2455 /LL=29477 /DEF=Rattus norvegicus microtubule-associated protein tau (Mapt), mRNA. /PROD=microtubule-associated protein tau /FL=gb:NM_017212.1 NM_017212 microtubule-associated protein tau Mapt 29477 NM_017212 0000226 // microtubule cytoskeleton organization // not recorded /// 0000226 // microtubule cytoskeleton organization // inferred from sequence or structural similarity /// 0006915 // apoptosis // inferred from direct assay /// 0007017 // microtubule-based process // non-traceable author statement /// 0007026 // negative regulation of microtubule depolymerization // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from direct assay /// 0010033 // response to organic substance // inferred from direct assay /// 0030182 // neuron differentiation // non-traceable author statement /// 0031116 // positive regulation of microtubule polymerization // not recorded /// 0031116 // positive regulation of microtubule polymerization // inferred from sequence or structural similarity /// 0045773 // positive regulation of axon extension // not recorded /// 0045773 // positive regulation of axon extension // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from sequence or structural similarity /// 0030424 // axon // inferred from electronic annotation /// 0030426 // growth cone // not recorded /// 0030426 // growth cone // inferred from sequence or structural similarity /// 0035085 // cilium axoneme // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0044295 // axonal growth cone // inferred from direct assay /// 0045298 // tubulin complex // not recorded /// 0045298 // tubulin complex // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // inferred from direct assay /// 0008017 // microtubule binding // not recorded /// 0008017 // microtubule binding // inferred from sequence or structural similarity /// 0017124 // SH3 domain binding // not recorded /// 0019899 // enzyme binding // inferred from physical interaction /// 0019899 // enzyme binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from mutant phenotype /// 0034187 // apolipoprotein E binding // not recorded /// 0042802 // identical protein binding // not recorded 1368138_at BI281170 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281170 /DB_XREF=gi:14930636 /DB_XREF=UI-R-CT0s-cat-b-09-0-UI.s1 /CLONE=UI-R-CT0s-cat-b-09-0-UI /FEA=FLmRNA /CNT=55 /TID=Rn.2455.1 /TIER=Stack /STK=13 /UG=Rn.2455 /LL=29477 /UG_GENE=Mapt /UG_TITLE=microtubule-associated protein tau /FL=gb:NM_017212.1 BI281170 microtubule-associated protein tau Mapt 29477 NM_017212 0000226 // microtubule cytoskeleton organization // not recorded /// 0000226 // microtubule cytoskeleton organization // inferred from sequence or structural similarity /// 0006915 // apoptosis // inferred from direct assay /// 0007017 // microtubule-based process // non-traceable author statement /// 0007026 // negative regulation of microtubule depolymerization // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from direct assay /// 0010033 // response to organic substance // inferred from direct assay /// 0030182 // neuron differentiation // non-traceable author statement /// 0031116 // positive regulation of microtubule polymerization // not recorded /// 0031116 // positive regulation of microtubule polymerization // inferred from sequence or structural similarity /// 0045773 // positive regulation of axon extension // not recorded /// 0045773 // positive regulation of axon extension // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from sequence or structural similarity /// 0030424 // axon // inferred from electronic annotation /// 0030426 // growth cone // not recorded /// 0030426 // growth cone // inferred from sequence or structural similarity /// 0035085 // cilium axoneme // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0044295 // axonal growth cone // inferred from direct assay /// 0045298 // tubulin complex // not recorded /// 0045298 // tubulin complex // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // inferred from direct assay /// 0008017 // microtubule binding // not recorded /// 0008017 // microtubule binding // inferred from sequence or structural similarity /// 0017124 // SH3 domain binding // not recorded /// 0019899 // enzyme binding // inferred from physical interaction /// 0019899 // enzyme binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from mutant phenotype /// 0034187 // apolipoprotein E binding // not recorded /// 0042802 // identical protein binding // not recorded 1368139_s_at Y00714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y00714.1 /DB_XREF=gi:55670 /FEA=mRNA /CNT=1 /TID=Rn.25737.1 /TIER=ConsEnd /STK=0 /UG=Rn.25737 /LL=171322 /UG_GENE=Akp2 /UG_TITLE=alkaline phosphatase 2, liver /DEF=Rat mRNA for alkaline phosphatase (EC 3.1.3.1). Y00714 alkaline phosphatase, liver/bone/kidney Alpl 25586 NM_013059 0008152 // metabolic process // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from mutant phenotype /// 0016311 // dephosphorylation // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033280 // response to vitamin D // inferred from electronic annotation /// 0033280 // response to vitamin D // not recorded /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0046677 // response to antibiotic // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from direct assay /// 0071407 // cellular response to organic cyclic substance // not recorded /// 0071529 // cementum mineralization // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004035 // alkaline phosphatase activity // inferred from direct assay /// 0004035 // alkaline phosphatase activity // not recorded /// 0004035 // alkaline phosphatase activity // traceable author statement /// 0004035 // alkaline phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368140_at AI011345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011345 /DB_XREF=gi:3225177 /DB_XREF=EST205796 /CLONE=ROVAT65 /FEA=FLmRNA /CNT=34 /TID=Rn.18103.1 /TIER=Stack /STK=13 /UG=Rn.18103 /LL=116477 /UG_GENE=Prkwnk1 /UG_TITLE=protein kinase, lysine deficient 1 /FL=gb:AF227741.1 gb:NM_053794.1 AI011345 WNK lysine deficient protein kinase 1 Wnk1 116477 NM_001002823 /// NM_053794 0003084 // positive regulation of systemic arterial blood pressure // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006811 // ion transport // inferred from sequence or structural similarity /// 0007243 // intracellular protein kinase cascade // inferred from direct assay /// 0007243 // intracellular protein kinase cascade // not recorded /// 0033673 // negative regulation of kinase activity // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0050794 // regulation of cellular process // inferred from sequence or structural similarity 0005625 // soluble fraction // not recorded /// 0005626 // insoluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0042598 // vesicular fraction // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from mutant phenotype /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019870 // potassium channel inhibitor activity // inferred from direct assay /// 0030291 // protein serine/threonine kinase inhibitor activity // inferred from direct assay 1368141_at AF242550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF242550.1 /DB_XREF=gi:8650477 /FEA=FLmRNA /CNT=28 /TID=Rn.6187.1 /TIER=FL+Stack /STK=8 /UG=Rn.6187 /LL=64530 /UG_GENE=Cnbp /DEF=Rattus norvegicus cellular nucleic acid binding protein mRNA, complete cds. /PROD=cellular nucleic acid binding protein /FL=gb:AF242550.1 gb:NM_022598.1 gb:D45254.1 AF242550 CCHC-type zinc finger, nucleic acid binding protein Cnbp 64530 NM_022598 0006350 // transcription // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003727 // single-stranded RNA binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1368142_at NM_130416 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130416.1 /DB_XREF=gi:18426843 /GEN=Anxa7 /FEA=FLmRNA /CNT=30 /TID=Rn.18916.1 /TIER=FL+Stack /STK=8 /UG=Rn.18916 /DEF=Rattus norvegicus annexin A7 (Anxa7), mRNA. /PROD=annexin A7 /FL=gb:NM_130416.1 gb:AF280423.1 NM_130416 annexin A7 Anxa7 155423 NM_130416 0006874 // cellular calcium ion homeostasis // not recorded /// 0006944 // cellular membrane fusion // inferred from direct assay /// 0007599 // hemostasis // not recorded /// 0008283 // cell proliferation // not recorded /// 0008360 // regulation of cell shape // not recorded /// 0009651 // response to salt stress // not recorded /// 0009992 // cellular water homeostasis // not recorded /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0051592 // response to calcium ion // inferred from direct assay 0005625 // soluble fraction // not recorded /// 0005626 // insoluble fraction // not recorded /// 0005634 // nucleus // not recorded /// 0005635 // nuclear envelope // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0031982 // vesicle // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005544 // calcium-dependent phospholipid binding // inferred from direct assay /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded 1368143_at AI013902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013902 /DB_XREF=gi:4133939 /DB_XREF=EST208577 /CLONE=RSPBZ28 /FEA=FLmRNA /CNT=30 /TID=Rn.18916.1 /TIER=Stack /STK=13 /UG=Rn.18916 /UG_TITLE=Rattus norvegicus annexin VII mRNA, complete cds /FL=gb:NM_130416.1 gb:AF280423.1 AI013902 annexin A7 Anxa7 155423 NM_130416 0006874 // cellular calcium ion homeostasis // not recorded /// 0006944 // cellular membrane fusion // inferred from direct assay /// 0007599 // hemostasis // not recorded /// 0008283 // cell proliferation // not recorded /// 0008360 // regulation of cell shape // not recorded /// 0009651 // response to salt stress // not recorded /// 0009992 // cellular water homeostasis // not recorded /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0051592 // response to calcium ion // inferred from direct assay 0005625 // soluble fraction // not recorded /// 0005626 // insoluble fraction // not recorded /// 0005634 // nucleus // not recorded /// 0005635 // nuclear envelope // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0031982 // vesicle // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005544 // calcium-dependent phospholipid binding // inferred from direct assay /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded 1368144_at AF321837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF321837.1 /DB_XREF=gi:12958612 /FEA=FLmRNA /CNT=24 /TID=Rn.1892.1 /TIER=FL /STK=1 /UG=Rn.1892 /LL=84583 /UG_GENE=Rgs2 /DEF=Rattus norvegicus regulator of G-protein signaling 2 mRNA, complete cds. /PROD=regulator of G-protein signaling 2 /FL=gb:AF321837.1 gb:AY043246.1 gb:AF279918.1 gb:NM_053453.1 AF321837 regulator of G-protein signaling 2 Rgs2 84583 NM_053453 0007049 // cell cycle // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0045744 // negative regulation of G-protein coupled receptor protein signaling pathway // traceable author statement /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368145_at NM_013002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013002.1 /DB_XREF=gi:6981339 /GEN=Pcp4 /FEA=FLmRNA /CNT=17 /TID=Rn.9736.1 /TIER=FL+Stack /STK=8 /UG=Rn.9736 /LL=25510 /DEF=Rattus norvegicus Neuron specific protein PEP-19 (Purkinje cell protein 4) (Pcp4), mRNA. /PROD=neuron specific protein PEP-19 (Purkinje cellprotein 4) /FL=gb:NM_013002.1 gb:M24852.1 NM_013002 Purkinje cell protein 4 Pcp4 25510 NM_013002 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 1368146_at U02553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U02553.1 /DB_XREF=gi:409022 /FEA=FLmRNA /CNT=32 /TID=Rn.31120.1 /TIER=FL+Stack /STK=8 /UG=Rn.31120 /LL=114856 /UG_GENE=Ptpn16 /DEF=Rattus norvegicus protein tyrosine phosphatase mRNA, complete cds. /PROD=protein tyrosine phosphatase /FL=gb:NM_053769.1 gb:U02553.1 U02553 dual specificity phosphatase 1 Dusp1 114856 NM_053769 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0009416 // response to light stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0008330 // protein tyrosine/threonine phosphatase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // traceable author statement /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation 1368147_at BE110108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110108 /DB_XREF=gi:8502213 /DB_XREF=UI-R-BJ1-avf-b-07-0-UI.s1 /CLONE=UI-R-BJ1-avf-b-07-0-UI /FEA=FLmRNA /CNT=32 /TID=Rn.31120.1 /TIER=Stack /STK=7 /UG=Rn.31120 /LL=114856 /UG_GENE=Ptpn16 /UG_TITLE=protein tyrosine phosphatase, non-receptor type 16 /FL=gb:NM_053769.1 gb:U02553.1 BE110108 dual specificity phosphatase 1 Dusp1 114856 NM_053769 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0009416 // response to light stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0008330 // protein tyrosine/threonine phosphatase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // traceable author statement /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation 1368148_at NM_012610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012610.1 /DB_XREF=gi:6981271 /GEN=Ngfr /FEA=FLmRNA /CNT=19 /TID=Rn.10980.1 /TIER=FL+Stack /STK=8 /UG=Rn.10980 /LL=24596 /DEF=Rattus norvegicus Nerve growth factor receptor, fast (Ngfr), mRNA. /PROD=nerve growth factor receptor, fast /FL=gb:NM_012610.1 NM_012610 nerve growth factor receptor (TNFR superfamily, member 16) Ngfr 24596 NM_012610 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from direct assay /// 0006917 // induction of apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from direct assay /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0009611 // response to wounding // inferred from mutant phenotype /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0016048 // detection of temperature stimulus // inferred from electronic annotation /// 0016048 // detection of temperature stimulus // not recorded /// 0021675 // nerve development // inferred from electronic annotation /// 0021675 // nerve development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // not recorded /// 0031293 // membrane protein intracellular domain proteolysis // not recorded /// 0040037 // negative regulation of fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0040037 // negative regulation of fibroblast growth factor receptor signaling pathway // not recorded /// 0042488 // positive regulation of odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042488 // positive regulation of odontogenesis of dentine-containing tooth // not recorded /// 0043588 // skin development // inferred from electronic annotation /// 0043588 // skin development // not recorded /// 0045786 // negative regulation of cell cycle // not recorded /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0048635 // negative regulation of muscle organ development // inferred from physical interaction /// 0050770 // regulation of axonogenesis // not recorded /// 0050771 // negative regulation of axonogenesis // not recorded /// 0050772 // positive regulation of axonogenesis // not recorded /// 0051799 // negative regulation of hair follicle development // inferred from electronic annotation /// 0051799 // negative regulation of hair follicle development // not recorded 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005035 // death receptor activity // inferred from electronic annotation /// 0005035 // death receptor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0048406 // nerve growth factor binding // inferred from electronic annotation /// 0048406 // nerve growth factor binding // not recorded 1368149_at AI029318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029318 /DB_XREF=gi:4297741 /DB_XREF=UI-R-C0-ix-c-05-0-UI.s1 /CLONE=UI-R-C0-ix-c-05-0-UI /FEA=FLmRNA /CNT=24 /TID=Rn.10852.1 /TIER=ConsEnd /STK=4 /UG=Rn.10852 /LL=29560 /UG_GENE=Hif1a /UG_TITLE=hypoxia inducible factor 1, alpha subunit /FL=gb:AF057308.1 gb:NM_024359.1 AI029318 hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) Hif1a 29560 NM_024359 0001525 // angiogenesis // not recorded /// 0001666 // response to hypoxia // inferred from direct assay /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from sequence or structural similarity /// 0001755 // neural crest cell migration // not recorded /// 0001837 // epithelial to mesenchymal transition // not recorded /// 0001892 // embryonic placenta development // not recorded /// 0001947 // heart looping // not recorded /// 0002248 // connective tissue replacement involved in inflammatory response wound healing // not recorded /// 0006089 // lactate metabolic process // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0006879 // cellular iron ion homeostasis // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010468 // regulation of gene expression // not recorded /// 0010575 // positive regulation vascular endothelial growth factor production // not recorded /// 0010634 // positive regulation of epithelial cell migration // not recorded /// 0014850 // response to muscle activity // not recorded /// 0030154 // cell differentiation // not recorded /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0032364 // oxygen homeostasis // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0032909 // regulation of transforming growth factor-beta2 production // not recorded /// 0032963 // collagen metabolic process // not recorded /// 0035162 // embryonic hemopoiesis // not recorded /// 0042541 // hemoglobin biosynthetic process // not recorded /// 0042593 // glucose homeostasis // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043619 // regulation of transcription from RNA polymerase II promoter in response to oxidative stress // inferred from mutant phenotype /// 0043619 // regulation of transcription from RNA polymerase II promoter in response to oxidative stress // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045648 // positive regulation of erythrocyte differentiation // not recorded /// 0045926 // negative regulation of growth // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046716 // muscle cell homeostasis // not recorded /// 0046886 // positive regulation of hormone biosynthetic process // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0050790 // regulation of catalytic activity // not recorded /// 0051216 // cartilage development // not recorded /// 0051541 // elastin metabolic process // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // traceable author statement /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0009434 // microtubule-based flagellum // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003690 // double-stranded DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003702 // RNA polymerase II transcription factor activity // traceable author statement /// 0003704 // specific RNA polymerase II transcription factor activity // inferred from direct assay /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0035035 // histone acetyltransferase binding // not recorded /// 0035035 // histone acetyltransferase binding // inferred from sequence or structural similarity /// 0042826 // histone deacetylase binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from sequence or structural similarity /// 0051879 // Hsp90 protein binding // not recorded 1368150_at NM_031736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031736.1 /DB_XREF=gi:13929033 /GEN=Slc27a2 /FEA=FLmRNA /CNT=16 /TID=Rn.3608.1 /TIER=FL+Stack /STK=8 /UG=Rn.3608 /LL=65192 /DEF=Rattus norvegicus solute carrier family 27 (fatty acid transporter), member 2 (Slc27a2), mRNA. /PROD=solute carrier family 27 (fatty acidtransporter), member 2 /FL=gb:D85100.1 gb:NM_031736.1 NM_031736 solute carrier family 27 (fatty acid transporter), member 2 Slc27a2 65192 NM_031736 0000038 // very long-chain fatty acid metabolic process // not recorded /// 0001676 // long-chain fatty acid metabolic process // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0015908 // fatty acid transport // not recorded /// 0042760 // very long-chain fatty acid catabolic process // not recorded 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // not recorded /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // not recorded /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from direct assay /// 0004467 // long-chain fatty acid-CoA ligase activity // not recorded /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0015245 // fatty acid transporter activity // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0031957 // very long-chain fatty acid-CoA ligase activity // not recorded /// 0050197 // phytanate-CoA ligase activity // not recorded /// 0070251 // pristanate-CoA ligase activity // not recorded 1368151_at NM_019149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019149.1 /DB_XREF=gi:9506880 /GEN=Matr3 /FEA=FLmRNA /CNT=23 /TID=Rn.29774.1 /TIER=FL+Stack /STK=8 /UG=Rn.29774 /LL=29150 /DEF=Rattus norvegicus matrin 3 (Matr3), mRNA. /PROD=matrin 3 /FL=gb:M63485.1 gb:NM_019149.1 NM_019149 matrin 3 Matr3 29150 NM_019149 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368152_at NM_133394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133394.1 /DB_XREF=gi:19173749 /GEN=Serz-1 /FEA=FLmRNA /CNT=18 /TID=Rn.7790.1 /TIER=FL+Stack /STK=8 /UG=Rn.7790 /DEF=Rattus norvegicus putative zinc finger protein SERZ-1 (Serz-1), mRNA. /PROD=putative zinc finger protein SERZ-1 /FL=gb:NM_133394.1 gb:AY040615.1 NM_133394 zinc finger, DHHC-type containing 7 Zdhhc7 170906 NM_133394 0018345 // protein palmitoylation // inferred from electronic annotation /// 0018345 // protein palmitoylation // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016409 // palmitoyltransferase activity // inferred from electronic annotation /// 0016409 // palmitoyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368153_a_at AJ293698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ293698.1 /DB_XREF=gi:12055375 /GEN=jac /FEA=mRNA /CNT=1 /TID=Rn.7504.2 /TIER=ConsEnd /STK=0 /UG=Rn.7504 /LL=117536 /DEF=Rattus norvegicus mRNA for Jacob protein alternatively spliced isoform delta1 (jac gene). /PROD=Jacob protein, alternatively spliced isoformdelta1 AJ293698 nasal embryonic LHRH factor Nelf 117536 NM_057190 0005634 // nucleus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1368154_at NM_017090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017090.1 /DB_XREF=gi:8393503 /GEN=Gucy1a3 /FEA=FLmRNA /CNT=15 /TID=Rn.1974.1 /TIER=FL+Stack /STK=8 /UG=Rn.1974 /LL=25201 /DEF=Rattus norvegicus guanylate cyclase 1, soluble, alpha 3 (Gucy1a3), mRNA. /PROD=guanylate cyclase, soluble, alpha 1 (GTPpyrophosphate - lyase) /FL=gb:NM_017090.1 gb:M57405.1 gb:U60835.1 NM_017090 guanylate cyclase 1, soluble, alpha 3 Gucy1a3 497757 NM_017090 0006182 // cGMP biosynthetic process // inferred from direct assay /// 0006182 // cGMP biosynthetic process // not recorded /// 0006182 // cGMP biosynthetic process // inferred from electronic annotation /// 0007263 // nitric oxide mediated signal transduction // inferred from direct assay /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008217 // regulation of blood pressure // not recorded /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0009635 // response to herbicide // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030828 // positive regulation of cGMP biosynthetic process // inferred from electronic annotation /// 0030828 // positive regulation of cGMP biosynthetic process // not recorded /// 0052565 // response to defense-related host nitric oxide production // inferred from electronic annotation /// 0052565 // response to defense-related host nitric oxide production // not recorded /// 0060087 // relaxation of vascular smooth muscle // inferred from electronic annotation /// 0060087 // relaxation of vascular smooth muscle // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0008074 // guanylate cyclase complex, soluble // inferred from direct assay /// 0008074 // guanylate cyclase complex, soluble // traceable author statement /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // inferred from direct assay /// 0004383 // guanylate cyclase activity // traceable author statement /// 0004383 // guanylate cyclase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0043167 // ion binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay 1368155_at NM_031572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031572.1 /DB_XREF=gi:13994165 /GEN=Cyp2c12 /FEA=FLmRNA /CNT=14 /TID=Rn.2586.1 /TIER=FL+Stack /STK=8 /UG=Rn.2586 /LL=25011 /DEF=Rattus norvegicus Cytochrom P450 15-beta gene (Cyp2c12), mRNA. /PROD=cytochrome P450 2C12 /FL=gb:NM_031572.1 gb:J03786.1 gb:NM_012709.1 NM_031572 cytochrome P450, family 2, subfamily c, polypeptide 12 Cyp2c12 25011 NM_031572 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1368156_at NM_031662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031662.1 /DB_XREF=gi:13928915 /GEN=Camkk1 /FEA=FLmRNA /CNT=13 /TID=Rn.4851.1 /TIER=FL+Stack /STK=8 /UG=Rn.4851 /LL=60341 /DEF=Rattus norvegicus calciumcalmodulin-dependent protein kinase kinase 1, alpha (Camkk1), mRNA. /PROD=calciumcalmodulin-dependent protein kinasekinase 1, alpha /FL=gb:AB023658.1 gb:L42810.1 gb:NM_031662.1 NM_031662 calcium/calmodulin-dependent protein kinase kinase 1, alpha Camkk1 60341 NM_031662 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // traceable author statement /// 0032147 // activation of protein kinase activity // inferred from direct assay /// 0045860 // positive regulation of protein kinase activity // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004683 // calmodulin-dependent protein kinase activity // inferred from direct assay /// 0004683 // calmodulin-dependent protein kinase activity // not recorded /// 0004683 // calmodulin-dependent protein kinase activity // traceable author statement /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368157_at NM_024346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024346.1 /DB_XREF=gi:13242232 /GEN=Sclip /FEA=FLmRNA /CNT=20 /TID=Rn.14961.1 /TIER=FL+Stack /STK=8 /UG=Rn.14961 /LL=29246 /DEF=Rattus norvegicus Scgn10 like-protein (Sclip), mRNA. /PROD=Scgn10 like-protein /FL=gb:NM_024346.1 gb:AY004290.1 NM_024346 stathmin-like 3 Stmn3 29246 NM_024346 0007019 // microtubule depolymerization // inferred from mutant phenotype /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0031122 // cytoplasmic microtubule organization // not recorded /// 0031122 // cytoplasmic microtubule organization // inferred from sequence or structural similarity /// 0031175 // neuron projection development // not recorded /// 0031175 // neuron projection development // inferred from sequence or structural similarity /// 0032314 // regulation of Rac GTPase activity // not recorded /// 0032314 // regulation of Rac GTPase activity // inferred from sequence or structural similarity /// 0035021 // negative regulation of Rac protein signal transduction // not recorded /// 0035021 // negative regulation of Rac protein signal transduction // inferred from sequence or structural similarity /// 0051493 // regulation of cytoskeleton organization // not recorded /// 0051493 // regulation of cytoskeleton organization // inferred from sequence or structural similarity 0005625 // soluble fraction // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005819 // spindle // inferred from mutant phenotype 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0015631 // tubulin binding // traceable author statement /// 0019904 // protein domain specific binding // not recorded 1368158_at NM_019364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019364.1 /DB_XREF=gi:9507018 /GEN=RA410 /FEA=FLmRNA /CNT=14 /TID=Rn.10761.1 /TIER=FL+Stack /STK=8 /UG=Rn.10761 /LL=54350 /DEF=Rattus norvegicus vesicle transport-related (RA410), mRNA. /PROD=vesicle transport-related /FL=gb:U35364.1 gb:NM_019364.1 gb:D79221.1 gb:U57687.1 NM_019364 sec1 family domain containing 1 Scfd1 54350 NM_019364 0001666 // response to hypoxia // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // inferred from mutant phenotype /// 0006892 // post-Golgi vesicle-mediated transport // inferred from direct assay /// 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation /// 0009636 // response to toxin // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0060628 // regulation of ER to Golgi vesicle-mediated transport // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005798 // Golgi-associated vesicle // inferred from direct assay /// 0005801 // cis-Golgi network // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0017119 // Golgi transport complex // inferred from direct assay /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0019905 // syntaxin binding // traceable author statement /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0051535 // syntaxin-5 binding // inferred from direct assay 1368159_at NM_080582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080582.1 /DB_XREF=gi:18034784 /GEN=Abcb6 /FEA=FLmRNA /CNT=13 /TID=Rn.54408.1 /TIER=FL+Stack /STK=8 /UG=Rn.54408 /LL=140669 /DEF=Rattus norvegicus ATP-binding cassette, sub-family B (MDRTAP), member 6 (Abcb6), mRNA. /PROD=ATP-binding cassette, sub-family B (MDRTAP),member 6 /FL=gb:AF106563.1 gb:NM_080582.1 NM_080582 ATP-binding cassette, sub-family B (MDR/TAP), member 6 Abcb6 140669 NM_080582 0006779 // porphyrin biosynthetic process // not recorded /// 0006810 // transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0015886 // heme transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005740 // mitochondrial envelope // inferred from electronic annotation /// 0005740 // mitochondrial envelope // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031307 // integral to mitochondrial outer membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0015439 // heme-transporting ATPase activity // not recorded /// 0015562 // efflux transmembrane transporter activity // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0020037 // heme binding // not recorded /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 1368160_at NM_013144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013144.1 /DB_XREF=gi:6981079 /GEN=Igfbp1 /FEA=FLmRNA /CNT=13 /TID=Rn.34026.1 /TIER=FL+Stack /STK=8 /UG=Rn.34026 /LL=25685 /DEF=Rattus norvegicus Insulin-like growth factor binding protein 1 (Igfbp1), mRNA. /PROD=insulin-like growth factor binding protein 1 /FL=gb:NM_013144.1 gb:M89791.1 NM_013144 insulin-like growth factor binding protein 1 Igfbp1 25685 NM_013144 0001558 // regulation of cell growth // inferred from electronic annotation /// 0006006 // glucose metabolic process // traceable author statement /// 0008286 // insulin receptor signaling pathway // inferred from expression pattern /// 0030307 // positive regulation of cell growth // inferred from expression pattern /// 0042246 // tissue regeneration // inferred from expression pattern /// 0048015 // phosphoinositide-mediated signaling // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation 0005520 // insulin-like growth factor binding // not recorded /// 0005520 // insulin-like growth factor binding // traceable author statement /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation 1368161_a_at NM_012898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012898.1 /DB_XREF=gi:6978476 /GEN=Ahsg /FEA=FLmRNA /CNT=12 /TID=Rn.32083.1 /TIER=FL+Stack /STK=8 /UG=Rn.32083 /LL=25373 /DEF=Rattus norvegicus alpha-2-HS-glycoprotein (Ahsg), mRNA. /PROD=alpha 2 HS-glycoprotein alpha 2 (fetuin) /FL=gb:NM_012898.1 gb:M29758.1 NM_012898 alpha-2-HS-glycoprotein Ahsg 25373 NM_012898 0001503 // ossification // inferred from electronic annotation /// 0001503 // ossification // not recorded /// 0006461 // protein complex assembly // inferred from physical interaction /// 0006646 // phosphatidylethanolamine biosynthetic process // inferred from electronic annotation /// 0006646 // phosphatidylethanolamine biosynthetic process // inferred from sequence or structural similarity /// 0006656 // phosphatidylcholine biosynthetic process // inferred from electronic annotation /// 0006656 // phosphatidylcholine biosynthetic process // inferred from sequence or structural similarity /// 0006953 // acute-phase response // not recorded /// 0006953 // acute-phase response // inferred from sequence or structural similarity /// 0008584 // male gonad development // inferred from mutant phenotype /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0019695 // choline metabolic process // inferred from direct assay /// 0021987 // cerebral cortex development // inferred from expression pattern /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0030502 // negative regulation of bone mineralization // inferred from mutant phenotype /// 0030502 // negative regulation of bone mineralization // not recorded /// 0030502 // negative regulation of bone mineralization // inferred from sequence or structural similarity /// 0031100 // organ regeneration // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0045780 // positive regulation of bone resorption // inferred from mutant phenotype /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from direct assay /// 0050727 // regulation of inflammatory response // not recorded /// 0050727 // regulation of inflammatory response // inferred from sequence or structural similarity /// 0050766 // positive regulation of phagocytosis // not recorded /// 0050766 // positive regulation of phagocytosis // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from expression pattern /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004103 // choline kinase activity // inferred from direct assay /// 0004103 // choline kinase activity // inferred from electronic annotation /// 0004103 // choline kinase activity // inferred from sequence or structural similarity /// 0004103 // choline kinase activity // traceable author statement /// 0004104 // cholinesterase activity // inferred from electronic annotation /// 0004305 // ethanolamine kinase activity // inferred from electronic annotation /// 0004305 // ethanolamine kinase activity // inferred from sequence or structural similarity /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from sequence or structural similarity /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019210 // kinase inhibitor activity // non-traceable author statement /// 0030294 // receptor signaling protein tyrosine kinase inhibitor activity // inferred from direct assay /// 0033265 // choline binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from electronic annotation 1368162_at NM_133566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133566.1 /DB_XREF=gi:19424249 /GEN=LOC171096 /FEA=FLmRNA /CNT=12 /TID=Rn.9609.1 /TIER=FL+Stack /STK=8 /UG=Rn.9609 /DEF=Rattus norvegicus cystatin N (LOC171096), mRNA. /PROD=cystatin N /FL=gb:AY046415.1 gb:NM_133566.1 NM_133566 cystatin E/M Cst6 171096 NM_133566 0008544 // epidermis development // inferred from electronic annotation /// 0008544 // epidermis development // not recorded 0001533 // cornified envelope // inferred from electronic annotation /// 0001533 // cornified envelope // not recorded 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation 1368163_at J02997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J02997.1 /DB_XREF=gi:204463 /FEA=FLmRNA /CNT=21 /TID=Rn.1862.1 /TIER=FL+Stack /STK=8 /UG=Rn.1862 /LL=25253 /UG_GENE=Dpp4 /UG_TITLE=Dipeptidyl peptidase 4 /DEF=Rat bile canaliculus domain-specific membrane glycoprotein mRNA, complete cds. /FL=gb:J02997.1 gb:NM_012789.1 gb:J04591.1 J02997 dipeptidylpeptidase 4 Dpp4 25253 NM_012789 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0002709 // regulation of T cell mediated immunity // inferred from mutant phenotype /// 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0010716 // negative regulation of extracellular matrix disassembly // not recorded /// 0010716 // negative regulation of extracellular matrix disassembly // inferred from sequence or structural similarity /// 0010716 // negative regulation of extracellular matrix disassembly // inferred from electronic annotation /// 0031295 // T cell costimulation // not recorded /// 0031295 // T cell costimulation // inferred from sequence or structural similarity /// 0031295 // T cell costimulation // inferred from electronic annotation /// 0033632 // regulation of cell-cell adhesion mediated by integrin // inferred from electronic annotation /// 0033632 // regulation of cell-cell adhesion mediated by integrin // not recorded /// 0042110 // T cell activation // inferred from electronic annotation /// 0042110 // T cell activation // not recorded /// 0043542 // endothelial cell migration // not recorded /// 0043542 // endothelial cell migration // inferred from sequence or structural similarity /// 0043542 // endothelial cell migration // inferred from electronic annotation /// 0051234 // establishment of localization // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // inferred from mutant phenotype /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0030027 // lamellipodium // not recorded /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030139 // endocytic vesicle // not recorded /// 0030139 // endocytic vesicle // inferred from sequence or structural similarity /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0031258 // lamellipodium membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0046581 // intercellular canaliculus // inferred from electronic annotation /// 0046581 // intercellular canaliculus // not recorded /// 0071438 // invadopodium membrane // not recorded /// 0071438 // invadopodium membrane // inferred from sequence or structural similarity /// 0071438 // invadopodium membrane // inferred from electronic annotation 0002020 // protease binding // not recorded /// 0002020 // protease binding // inferred from sequence or structural similarity /// 0002020 // protease binding // inferred from electronic annotation /// 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from sequence or structural similarity /// 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005518 // collagen binding // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // not recorded /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0008239 // dipeptidyl-peptidase activity // inferred from direct assay /// 0008239 // dipeptidyl-peptidase activity // inferred from mutant phenotype /// 0008239 // dipeptidyl-peptidase activity // not recorded /// 0008239 // dipeptidyl-peptidase activity // inferred from sequence or structural similarity /// 0008239 // dipeptidyl-peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from mutant phenotype /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation 1368164_at NM_053850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053850.1 /DB_XREF=gi:16758713 /GEN=Blvra /FEA=FLmRNA /CNT=16 /TID=Rn.9865.1 /TIER=FL+Stack /STK=8 /UG=Rn.9865 /LL=116599 /DEF=Rattus norvegicus biliverdin reductase A (Blvra), mRNA. /PROD=biliverdin reductase A /FL=gb:M81681.1 gb:NM_053850.1 NM_053850 biliverdin reductase A Blvra 116599 NM_053850 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0042167 // heme catabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004074 // biliverdin reductase activity // not recorded /// 0004074 // biliverdin reductase activity // traceable author statement /// 0004074 // biliverdin reductase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368165_at NM_017243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017243.1 /DB_XREF=gi:8394052 /GEN=Prps1 /FEA=FLmRNA /CNT=14 /TID=Rn.9761.1 /TIER=FL+Stack /STK=8 /UG=Rn.9761 /LL=29562 /DEF=Rattus norvegicus phosphoribosyl pyrophosphate synthetase 1 (Prps1), mRNA. /PROD=phosphoribosyl pyrophosphate synthetase 1 /FL=gb:M17258.1 gb:NM_017243.1 gb:M29392.1 NM_017243 phosphoribosyl pyrophosphate synthetase 1 Prps1 29562 NM_017243 0006144 // purine base metabolic process // not recorded /// 0006164 // purine nucleotide biosynthetic process // not recorded /// 0006167 // AMP biosynthetic process // inferred from direct assay /// 0007399 // nervous system development // not recorded /// 0009116 // nucleoside metabolic process // inferred from electronic annotation /// 0009156 // ribonucleoside monophosphate biosynthetic process // inferred from electronic annotation /// 0009165 // nucleotide biosynthetic process // inferred from direct assay /// 0009165 // nucleotide biosynthetic process // inferred from electronic annotation /// 0019693 // ribose phosphate metabolic process // inferred from direct assay /// 0031100 // organ regeneration // inferred from expression pattern /// 0034418 // urate biosynthetic process // not recorded /// 0044249 // cellular biosynthetic process // inferred from electronic annotation /// 0046101 // hypoxanthine biosynthetic process // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004749 // ribose phosphate diphosphokinase activity // inferred from direct assay /// 0004749 // ribose phosphate diphosphokinase activity // not recorded /// 0004749 // ribose phosphate diphosphokinase activity // inferred from sequence or structural similarity /// 0004749 // ribose phosphate diphosphokinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from direct assay /// 0016208 // AMP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019003 // GDP binding // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0043531 // ADP binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1368166_at NM_031711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031711.1 /DB_XREF=gi:13928995 /GEN=Arl2 /FEA=FLmRNA /CNT=14 /TID=Rn.36965.1 /TIER=FL+Stack /STK=8 /UG=Rn.36965 /LL=65142 /DEF=Rattus norvegicus ADP-ribosylation-like 2 (Arl2), mRNA. /PROD=ADP-ribosylation-like 2 /FL=gb:NM_031711.1 NM_031711 ADP-ribosylation factor-like 2 Arl2 65142 NM_031711 0007049 // cell cycle // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015870 // acetylcholine transport // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1368167_at NM_012938 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012938.1 /DB_XREF=gi:6978718 /GEN=Ctse /FEA=FLmRNA /CNT=13 /TID=Rn.6758.1 /TIER=FL+Stack /STK=8 /UG=Rn.6758 /LL=25424 /DEF=Rattus norvegicus Cathepsin E (Ctse), mRNA. /PROD=cathepsin E, (two slightly different products (aand b) may be due to differential splicing) /FL=gb:NM_012938.1 gb:D38104.1 NM_012938 cathepsin E Ctse 25424 NM_012938 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0016540 // protein autoprocessing // inferred from mutant phenotype /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // inferred from direct assay /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // not recorded /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // inferred from electronic annotation 0005768 // endosome // inferred from direct assay /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // inferred from direct assay /// 0004190 // aspartic-type endopeptidase activity // not recorded /// 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1368168_at NM_053380 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053380.1 /DB_XREF=gi:16758109 /GEN=Slc34a2 /FEA=FLmRNA /CNT=12 /TID=Rn.16933.1 /TIER=FL+Stack /STK=8 /UG=Rn.16933 /LL=84395 /DEF=Rattus norvegicus solute carrier family 34 (sodium phosphate), member 2 (Slc34a2), mRNA. /PROD=solute carrier family 34 (sodium phosphate),member 2 /FL=gb:AF157026.1 gb:NM_053380.1 NM_053380 solute carrier family 34 (sodium phosphate), member 2 Slc34a2 84395 NM_053380 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006817 // phosphate transport // inferred from mutant phenotype /// 0006817 // phosphate transport // not recorded /// 0006817 // phosphate transport // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0009750 // response to fructose stimulus // inferred from expression pattern /// 0030643 // cellular phosphate ion homeostasis // inferred from electronic annotation /// 0030643 // cellular phosphate ion homeostasis // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0035435 // phosphate transmembrane transport // not recorded /// 0043627 // response to estrogen stimulus // not recorded /// 0043627 // response to estrogen stimulus // inferred from electronic annotation 0005903 // brush border // not recorded /// 0005903 // brush border // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from direct assay 0005436 // sodium:phosphate symporter activity // inferred from electronic annotation /// 0005436 // sodium:phosphate symporter activity // not recorded /// 0015293 // symporter activity // inferred from electronic annotation /// 0015321 // sodium-dependent phosphate transmembrane transporter activity // inferred from mutant phenotype /// 0015321 // sodium-dependent phosphate transmembrane transporter activity // not recorded /// 0015321 // sodium-dependent phosphate transmembrane transporter activity // inferred from electronic annotation /// 0031402 // sodium ion binding // inferred from electronic annotation /// 0031402 // sodium ion binding // not recorded /// 0042301 // phosphate binding // inferred from electronic annotation /// 0042301 // phosphate binding // not recorded 1368169_at NM_053460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053460.1 /DB_XREF=gi:16758203 /GEN=Pick1 /FEA=FLmRNA /CNT=12 /TID=Rn.24750.1 /TIER=FL+Stack /STK=8 /UG=Rn.24750 /LL=84591 /DEF=Rattus norvegicus protein that interacts with C kinase 1 (Pick1), mRNA. /PROD=protein that interacts with C kinase 1 /FL=gb:AF327562.1 gb:NM_053460.1 gb:AF373289.1 NM_053460 protein interacting with PRKCA 1 Pick1 84591 NM_053460 0006200 // ATP catabolic process // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006605 // protein targeting // inferred from electronic annotation /// 0006605 // protein targeting // not recorded /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // not recorded /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from sequence or structural similarity /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0015844 // monoamine transport // not recorded /// 0015844 // monoamine transport // inferred from sequence or structural similarity /// 0015844 // monoamine transport // inferred from electronic annotation /// 0015872 // dopamine transport // non-traceable author statement /// 0043113 // receptor clustering // inferred from mutant phenotype /// 0043113 // receptor clustering // not recorded /// 0043113 // receptor clustering // inferred from sequence or structural similarity 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030666 // endocytic vesicle membrane // not recorded /// 0042734 // presynaptic membrane // not recorded /// 0042734 // presynaptic membrane // inferred from sequence or structural similarity /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0043234 // protein complex // inferred from physical interaction /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // not recorded /// 0045202 // synapse // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0001664 // G-protein-coupled receptor binding // traceable author statement /// 0005080 // protein kinase C binding // inferred from direct assay /// 0005080 // protein kinase C binding // not recorded /// 0005080 // protein kinase C binding // inferred from sequence or structural similarity /// 0005102 // receptor binding // inferred from physical interaction /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // not recorded /// 0008022 // protein C-terminus binding // inferred from sequence or structural similarity /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0016887 // ATPase activity // inferred from sequence or structural similarity /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from mutant phenotype /// 0030971 // receptor tyrosine kinase binding // traceable author statement /// 0035256 // metabotropic glutamate receptor binding // traceable author statement /// 0042802 // identical protein binding // inferred from direct assay /// 0046875 // ephrin receptor binding // traceable author statement /// 0051020 // GTPase binding // traceable author statement 1368170_at NM_024371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024371.1 /DB_XREF=gi:13242268 /GEN=Gabt1 /FEA=FLmRNA /CNT=11 /TID=Rn.10035.1 /TIER=FL+Stack /STK=8 /UG=Rn.10035 /LL=79212 /DEF=Rattus norvegicus GABA transporter protein (Gabt1), mRNA. /PROD=GABA transporter protein /FL=gb:NM_024371.1 gb:M59742.1 NM_024371 solute carrier family 6 (neurotransmitter transporter, GABA), member 1 Slc6a1 79212 NM_024371 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0007612 // learning // inferred from mutant phenotype /// 0009636 // response to toxin // inferred from mutant phenotype /// 0009744 // response to sucrose stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from mutant phenotype /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010288 // response to lead ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014074 // response to purine // inferred from mutant phenotype /// 0032229 // negative regulation of synaptic transmission, GABAergic // inferred from mutant phenotype /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0042220 // response to cocaine // inferred from expression pattern /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051592 // response to calcium ion // inferred from expression pattern /// 0051939 // gamma-aminobutyric acid import // inferred from direct assay 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0005332 // gamma-aminobutyric acid:sodium symporter activity // inferred from direct assay /// 0005332 // gamma-aminobutyric acid:sodium symporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0015293 // symporter activity // inferred from electronic annotation 1368171_at NM_017061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017061.1 /DB_XREF=gi:8393732 /GEN=Lox /FEA=FLmRNA /CNT=25 /TID=Rn.11372.1 /TIER=FL+Stack /STK=8 /UG=Rn.11372 /LL=24914 /DEF=Rattus norvegicus Lysyl oxidase (Lox), mRNA. /PROD=lysyl oxidase (an H-rev gene with its expressiondown-regulated in HRAS-transformed rat 208F fibroblasts) /FL=gb:U11038.1 gb:NM_017061.1 NM_017061 lysyl oxidase Lox 24914 NM_017061 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0008152 // metabolic process // not recorded /// 0009725 // response to hormone stimulus // inferred from direct assay /// 0030199 // collagen fibril organization // inferred from direct assay /// 0030199 // collagen fibril organization // inferred from mutant phenotype /// 0030199 // collagen fibril organization // not recorded /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0042060 // wound healing // inferred from expression pattern /// 0042060 // wound healing // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0048251 // elastic fiber assembly // inferred from mutant phenotype /// 0048251 // elastic fiber assembly // not recorded /// 0048251 // elastic fiber assembly // inferred from electronic annotation /// 0048545 // response to steroid hormone stimulus // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from direct assay /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen // inferred from electronic annotation /// 0005581 // collagen // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay 0004720 // protein-lysine 6-oxidase activity // inferred from direct assay /// 0004720 // protein-lysine 6-oxidase activity // inferred from mutant phenotype /// 0004720 // protein-lysine 6-oxidase activity // not recorded /// 0004720 // protein-lysine 6-oxidase activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from mutant phenotype /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016641 // oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368172_a_at BI304009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI304009 /DB_XREF=gi:14980289 /DB_XREF=UI-R-DR0-cjc-c-04-0-UI.s1 /CLONE=UI-R-DR0-cjc-c-04-0-UI /FEA=FLmRNA /CNT=25 /TID=Rn.11372.1 /TIER=Stack /STK=6 /UG=Rn.11372 /LL=24914 /UG_GENE=Lox /UG_TITLE=Lysyl oxidase /FL=gb:U11038.1 gb:NM_017061.1 BI304009 lysyl oxidase Lox 24914 NM_017061 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0008152 // metabolic process // not recorded /// 0009725 // response to hormone stimulus // inferred from direct assay /// 0030199 // collagen fibril organization // inferred from direct assay /// 0030199 // collagen fibril organization // inferred from mutant phenotype /// 0030199 // collagen fibril organization // not recorded /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0042060 // wound healing // inferred from expression pattern /// 0042060 // wound healing // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0048251 // elastic fiber assembly // inferred from mutant phenotype /// 0048251 // elastic fiber assembly // not recorded /// 0048251 // elastic fiber assembly // inferred from electronic annotation /// 0048545 // response to steroid hormone stimulus // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from direct assay /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen // inferred from electronic annotation /// 0005581 // collagen // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay 0004720 // protein-lysine 6-oxidase activity // inferred from direct assay /// 0004720 // protein-lysine 6-oxidase activity // inferred from mutant phenotype /// 0004720 // protein-lysine 6-oxidase activity // not recorded /// 0004720 // protein-lysine 6-oxidase activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from mutant phenotype /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016641 // oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368173_at NM_021754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021754.1 /DB_XREF=gi:11120703 /GEN=Nap65 /FEA=FLmRNA /CNT=21 /TID=Rn.43930.1 /TIER=FL+Stack /STK=8 /UG=Rn.43930 /LL=60373 /DEF=Rattus norvegicus Nopp140 associated protein (Nap65), mRNA. /PROD=Nopp140 associated protein /FL=gb:NM_021754.1 gb:AF194371.1 NM_021754 nucleolar protein NOP58 Nop58 60373 NM_021754 0000154 // rRNA modification // non-traceable author statement /// 0006608 // snRNP protein import into nucleus // inferred from direct assay /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005732 // small nucleolar ribonucleoprotein complex // inferred from direct assay /// 0005732 // small nucleolar ribonucleoprotein complex // not recorded /// 0005732 // small nucleolar ribonucleoprotein complex // inferred from electronic annotation /// 0015030 // Cajal body // inferred from electronic annotation /// 0015030 // Cajal body // not recorded /// 0070761 // pre-snoRNP complex // inferred from electronic annotation /// 0070761 // pre-snoRNP complex // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008649 // rRNA methyltransferase activity // non-traceable author statement /// 0030515 // snoRNA binding // inferred from electronic annotation /// 0030515 // snoRNA binding // not recorded /// 0030519 // snoRNP binding // traceable author statement /// 0051082 // unfolded protein binding // traceable author statement 1368174_at NM_019371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019371.1 /DB_XREF=gi:9507122 /GEN=SM-20 /FEA=FLmRNA /CNT=18 /TID=Rn.10994.1 /TIER=FL+Stack /STK=8 /UG=Rn.10994 /LL=54702 /DEF=Rattus norvegicus factor-responsive smooth muscle protein (SM-20), mRNA. /PROD=factor-responsive smooth muscle protein /FL=gb:U06713.1 gb:NM_019371.1 NM_019371 EGL nine homolog 3 (C. elegans) Egln3 54702 NM_019371 0001666 // response to hypoxia // inferred from direct assay /// 0006915 // apoptosis // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368175_at NM_133620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133620.1 /DB_XREF=gi:19424341 /GEN=Zhx1 /FEA=FLmRNA /CNT=14 /TID=Rn.16902.1 /TIER=FL+Stack /STK=8 /UG=Rn.16902 /DEF=Rattus norvegicus zinc-fingers and homeoboxes 1 (Zhx1), mRNA. /PROD=zinc-fingers and homeoboxes 1 /FL=gb:NM_133620.1 gb:AB072439.1 NM_133620 zinc fingers and homeoboxes 1 Zhx1 171159 NM_133620 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368176_at NM_031528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031528.1 /DB_XREF=gi:13928711 /GEN=Rara /FEA=FLmRNA /CNT=13 /TID=Rn.23656.1 /TIER=FL+Stack /STK=8 /UG=Rn.23656 /LL=24705 /DEF=Rattus norvegicus Retinoic acid receptor, alpha (Rara), mRNA. /PROD=retinoic acid receptor, alpha /FL=gb:U15211.1 gb:NM_031528.1 NM_031528 retinoic acid receptor, alpha Rara 24705 NM_031528 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001889 // liver development // inferred from expression pattern /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006950 // response to stress // inferred from expression pattern /// 0007165 // signal transduction // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007565 // female pregnancy // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008584 // male gonad development // inferred from direct assay /// 0010628 // positive regulation of gene expression // not recorded /// 0010629 // negative regulation of gene expression // not recorded /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // inferred from mutant phenotype /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from direct assay /// 0021766 // hippocampus development // inferred from expression pattern /// 0030520 // estrogen receptor signaling pathway // not recorded /// 0030850 // prostate gland development // inferred from expression pattern /// 0030852 // regulation of granulocyte differentiation // inferred from electronic annotation /// 0030852 // regulation of granulocyte differentiation // not recorded /// 0030853 // negative regulation of granulocyte differentiation // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032355 // response to estradiol stimulus // not recorded /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032526 // response to retinoic acid // not recorded /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0032689 // negative regulation of interferon-gamma production // not recorded /// 0032720 // negative regulation of tumor necrosis factor production // not recorded /// 0032736 // positive regulation of interleukin-13 production // not recorded /// 0032753 // positive regulation of interleukin-4 production // not recorded /// 0032754 // positive regulation of interleukin-5 production // not recorded /// 0033189 // response to vitamin A // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043277 // apoptotic cell clearance // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from direct assay /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045630 // positive regulation of T-helper 2 cell differentiation // not recorded /// 0045666 // positive regulation of neuron differentiation // inferred from direct assay /// 0045767 // regulation of anti-apoptosis // inferred from direct assay /// 0045787 // positive regulation of cell cycle // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045947 // negative regulation of translational initiation // inferred from electronic annotation /// 0045947 // negative regulation of translational initiation // not recorded /// 0048167 // regulation of synaptic plasticity // inferred from direct assay /// 0048384 // retinoic acid receptor signaling pathway // not recorded /// 0051099 // positive regulation of binding // not recorded /// 0051897 // positive regulation of protein kinase B signaling cascade // inferred from mutant phenotype /// 0055012 // ventricular cardiac muscle cell differentiation // inferred from electronic annotation /// 0055012 // ventricular cardiac muscle cell differentiation // not recorded /// 0060591 // chondroblast differentiation // inferred from electronic annotation /// 0060591 // chondroblast differentiation // not recorded /// 0061037 // negative regulation of cartilage development // inferred from electronic annotation /// 0061037 // negative regulation of cartilage development // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from mutant phenotype /// 0071222 // cellular response to lipopolysaccharide // not recorded /// 0071300 // cellular response to retinoic acid // not recorded /// 0071391 // cellular response to estrogen stimulus // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030425 // dendrite // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000900 // translation repressor activity, nucleic acid binding // inferred from direct assay /// 0001972 // retinoic acid binding // not recorded /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0003708 // retinoic acid receptor activity // not recorded /// 0003708 // retinoic acid receptor activity // traceable author statement /// 0003708 // retinoic acid receptor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // not recorded /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0019899 // enzyme binding // not recorded /// 0019904 // protein domain specific binding // not recorded /// 0030528 // transcription regulator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0031490 // chromatin DNA binding // not recorded /// 0035014 // phosphoinositide 3-kinase regulator activity // inferred from mutant phenotype /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0048027 // mRNA 5'-UTR binding // inferred from direct assay 1368177_at NM_057107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057107.1 /DB_XREF=gi:16923951 /GEN=Facl3 /FEA=FLmRNA /CNT=12 /TID=Rn.54820.1 /TIER=FL+Stack /STK=8 /UG=Rn.54820 /LL=114024 /DEF=Rattus norvegicus fatty acid Coenzyme A ligase, long chain 3 (Facl3), mRNA. /PROD=fatty acid Coenzyme A ligase, long chain 3 /FL=gb:NM_057107.1 gb:D30666.1 NM_057107 acyl-CoA synthetase long-chain family member 3 Acsl3 114024 NM_057107 0006629 // lipid metabolic process // traceable author statement /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // traceable author statement /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from direct assay /// 0007420 // brain development // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003987 // acetate-CoA ligase activity // traceable author statement /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from direct assay /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1368178_at NM_031712 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031712.1 /DB_XREF=gi:13928997 /GEN=Pdzk1 /FEA=FLmRNA /CNT=12 /TID=Rn.10800.1 /TIER=FL+Stack /STK=8 /UG=Rn.10800 /LL=65144 /DEF=Rattus norvegicus PDZ domain containing 1 (Pdzk1), mRNA. /PROD=PDZ domain containing 1 /FL=gb:NM_031712.1 gb:AF116896.1 gb:AF013145.1 NM_031712 PDZ domain containing 1 Pdzk1 65144 NM_031712 0006810 // transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0015879 // carnitine transport // inferred from electronic annotation /// 0015879 // carnitine transport // not recorded /// 0030301 // cholesterol transport // non-traceable author statement /// 0034767 // positive regulation of ion transmembrane transport // inferred from electronic annotation /// 0034767 // positive regulation of ion transmembrane transport // not recorded /// 0046907 // intracellular transport // non-traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from electronic annotation /// 0031526 // brush border membrane // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005124 // scavenger receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030165 // PDZ domain binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // not recorded 1368179_at NM_134465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134465.1 /DB_XREF=gi:19745193 /GEN=Tslpr /FEA=FLmRNA /CNT=11 /TID=Rn.22704.1 /TIER=FL+Stack /STK=8 /UG=Rn.22704 /DEF=Rattus norvegicus thymic stromal-derived lymphopoietin, receptor (Tslpr), mRNA. /PROD=thymic stromal-derived lymphopoietin, receptor /FL=gb:NM_134465.1 gb:AF404510.1 NM_134465 cytokine receptor-like factor 2 Crlf2 171499 NM_134465 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005125 // cytokine activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // traceable author statement 1368180_s_at NM_017013 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017013.1 /DB_XREF=gi:8393498 /GEN=Gsta2 /FEA=FLmRNA /CNT=11 /TID=Rn.40574.1 /TIER=FL+Stack /STK=8 /UG=Rn.40574 /LL=24422 /DEF=Rattus norvegicus Glutathione-S-transferase, alpha type (Yc?) (Gsta2), mRNA. /PROD=glutathione-S-transferase, alpha type (Yc?) /FL=gb:NM_017013.1 gb:M25891.1 NM_017013 glutathione S-transferase A2 /// LOC494499 protein Gsta2 /// LOC494499 24422 /// 494499 NM_001010921 /// NM_017013 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0042178 // xenobiotic catabolic process // inferred from direct assay /// 0042493 // response to drug // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005640 // nuclear outer membrane // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0004364 // glutathione transferase activity // inferred from direct assay /// 0004364 // glutathione transferase activity // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0043295 // glutathione binding // inferred from direct assay 1368181_at NM_022508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022508.1 /DB_XREF=gi:11968081 /GEN=LOC64300 /FEA=FLmRNA /CNT=10 /TID=Rn.1114.1 /TIER=FL+Stack /STK=8 /UG=Rn.1114 /LL=64300 /DEF=Rattus norvegicus C1-tetrahydrofolate synthase (LOC64300), mRNA. /PROD=C1-tetrahydrofolate synthase /FL=gb:NM_022508.1 gb:J05519.1 NM_022508 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase Mthfd1 64300 NM_022508 0000105 // histidine biosynthetic process // inferred from electronic annotation /// 0006164 // purine nucleotide biosynthetic process // inferred from electronic annotation /// 0006548 // histidine catabolic process // not recorded /// 0006730 // one-carbon metabolic process // inferred from expression pattern /// 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009086 // methionine biosynthetic process // inferred from electronic annotation /// 0009117 // nucleotide metabolic process // inferred from expression pattern /// 0009396 // folic acid and derivative biosynthetic process // inferred from electronic annotation /// 0046653 // tetrahydrofolate metabolic process // traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004329 // formate-tetrahydrofolate ligase activity // traceable author statement /// 0004329 // formate-tetrahydrofolate ligase activity // inferred from electronic annotation /// 0004477 // methenyltetrahydrofolate cyclohydrolase activity // traceable author statement /// 0004477 // methenyltetrahydrofolate cyclohydrolase activity // inferred from electronic annotation /// 0004486 // methylenetetrahydrofolate dehydrogenase activity // traceable author statement /// 0004488 // methylenetetrahydrofolate dehydrogenase (NADP+) activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016155 // formyltetrahydrofolate dehydrogenase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1368182_at NM_130739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130739.1 /DB_XREF=gi:18543340 /GEN=Facl6 /FEA=FLmRNA /CNT=10 /TID=Rn.33697.1 /TIER=FL+Stack /STK=8 /UG=Rn.33697 /LL=117243 /DEF=Rattus norvegicus fatty acid Coenzyme A ligase, long chain 6 (Facl6), mRNA. /PROD=fatty acid Coenzyme A ligase, long chain 6 /FL=gb:D10041.1 gb:NM_130739.1 NM_130739 acyl-CoA synthetase long-chain family member 6 Acsl6 117243 NM_130739 0001666 // response to hypoxia // inferred from expression pattern /// 0001676 // long-chain fatty acid metabolic process // inferred from direct assay /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from genetic interaction /// 0007405 // neuroblast proliferation // not recorded /// 0007405 // neuroblast proliferation // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from mutant phenotype /// 0009629 // response to gravity // inferred from expression pattern /// 0010747 // positive regulation of plasma membrane long-chain fatty acid transport // inferred from mutant phenotype /// 0010867 // positive regulation of triglyceride biosynthetic process // inferred from genetic interaction /// 0010976 // positive regulation of neuron projection development // inferred from mutant phenotype /// 0015908 // fatty acid transport // inferred from genetic interaction /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0048666 // neuron development // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from direct assay /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from genetic interaction /// 0004467 // long-chain fatty acid-CoA ligase activity // not recorded /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1368183_at NM_013187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013187.1 /DB_XREF=gi:6981369 /GEN=Plcg1 /FEA=FLmRNA /CNT=14 /TID=Rn.11243.1 /TIER=FL+Stack /STK=8 /UG=Rn.11243 /LL=25738 /DEF=Rattus norvegicus Phospholipase C, gamma 1 (Plcg1), mRNA. /PROD=phospholipase C, gamma 1 /FL=gb:NM_013187.1 gb:J03806.1 NM_013187 phospholipase C, gamma 1 Plcg1 25738 NM_013187 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0009306 // protein secretion // inferred from mutant phenotype /// 0009395 // phospholipid catabolic process // inferred from electronic annotation /// 0009629 // response to gravity // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010634 // positive regulation of epithelial cell migration // inferred from mutant phenotype /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0032236 // positive regulation of calcium ion transport via store-operated calcium channel activity // inferred from mutant phenotype /// 0032959 // inositol trisphosphate biosynthetic process // inferred from mutant phenotype /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043278 // response to morphine // inferred from expression pattern /// 0050852 // T cell receptor signaling pathway // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // not recorded 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0043005 // neuron projection // inferred from direct assay 0004435 // phosphoinositide phospholipase C activity // not recorded /// 0004435 // phosphoinositide phospholipase C activity // inferred from electronic annotation /// 0004629 // phospholipase C activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005158 // insulin receptor binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0035254 // glutamate receptor binding // inferred from electronic annotation /// 0035254 // glutamate receptor binding // not recorded /// 0051219 // phosphoprotein binding // inferred from physical interaction 1368184_at NM_130430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130430.1 /DB_XREF=gi:18426861 /GEN=Psmd9 /FEA=FLmRNA /CNT=14 /TID=Rn.24127.1 /TIER=FL+Stack /STK=8 /UG=Rn.24127 /LL=161475 /DEF=Rattus norvegicus proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 (Psmd9), mRNA. /PROD=proteasome (prosome, macropain) 26S subunit,non-ATPase, 9 /FL=gb:AF067728.1 gb:NM_130430.1 NM_130430 proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 Psmd9 161475 NM_130430 0006915 // apoptosis // inferred from mutant phenotype /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0032024 // positive regulation of insulin secretion // inferred from direct assay /// 0045941 // positive regulation of transcription // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046676 // negative regulation of insulin secretion // inferred from mutant phenotype /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070682 // proteasome regulatory particle assembly // not recorded /// 0070682 // proteasome regulatory particle assembly // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay 0003713 // transcription coactivator activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // inferred from direct assay /// 0043425 // bHLH transcription factor binding // inferred from direct assay 1368185_at NM_013189 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013189.1 /DB_XREF=gi:6980965 /GEN=Gnaz /FEA=FLmRNA /CNT=13 /TID=Rn.10943.1 /TIER=FL+Stack /STK=8 /UG=Rn.10943 /LL=25740 /DEF=Rattus norvegicus Guanine nucleotide binding protein, alpha (Gnaz), mRNA. /PROD=guanine nucleotide binding protein, alpha /FL=gb:J03773.1 gb:NM_013189.1 NM_013189 1368186_a_at U21683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U21683.1 /DB_XREF=gi:975276 /GEN=syk /FEA=FLmRNA /CNT=1 /TID=Rn.9135.2 /TIER=FL /STK=1 /UG=Rn.9135 /LL=25155 /DEF=Rattus norvegicus tyrosine kinase p72 (syk) mRNA, alternative splice sykA, complete cds. /PROD=p72 /FL=gb:U21683.1 U21683 spleen tyrosine kinase Syk 25155 NM_012758 0000187 // activation of MAPK activity // not recorded /// 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0001820 // serotonin secretion // inferred from electronic annotation /// 0001820 // serotonin secretion // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007159 // leukocyte cell-cell adhesion // inferred from electronic annotation /// 0007159 // leukocyte cell-cell adhesion // not recorded /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007167 // enzyme linked receptor protein signaling pathway // inferred from electronic annotation /// 0007167 // enzyme linked receptor protein signaling pathway // not recorded /// 0007257 // activation of JUN kinase activity // inferred from electronic annotation /// 0007257 // activation of JUN kinase activity // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0019370 // leukotriene biosynthetic process // inferred from electronic annotation /// 0019370 // leukotriene biosynthetic process // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // not recorded /// 0030593 // neutrophil chemotaxis // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // not recorded /// 0043306 // positive regulation of mast cell degranulation // inferred from mutant phenotype /// 0043306 // positive regulation of mast cell degranulation // not recorded /// 0043306 // positive regulation of mast cell degranulation // inferred from electronic annotation /// 0043366 // beta selection // inferred from electronic annotation /// 0043366 // beta selection // not recorded /// 0045401 // positive regulation of interleukin-3 biosynthetic process // inferred from electronic annotation /// 0045401 // positive regulation of interleukin-3 biosynthetic process // not recorded /// 0045425 // positive regulation of granulocyte macrophage colony-stimulating factor biosynthetic process // inferred from electronic annotation /// 0045425 // positive regulation of granulocyte macrophage colony-stimulating factor biosynthetic process // not recorded /// 0045579 // positive regulation of B cell differentiation // inferred from electronic annotation /// 0045579 // positive regulation of B cell differentiation // not recorded /// 0045588 // positive regulation of gamma-delta T cell differentiation // inferred from electronic annotation /// 0045588 // positive regulation of gamma-delta T cell differentiation // not recorded /// 0046638 // positive regulation of alpha-beta T cell differentiation // inferred from electronic annotation /// 0046638 // positive regulation of alpha-beta T cell differentiation // not recorded /// 0046641 // positive regulation of alpha-beta T cell proliferation // inferred from electronic annotation /// 0046641 // positive regulation of alpha-beta T cell proliferation // not recorded /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050776 // regulation of immune response // inferred from direct assay /// 0050850 // positive regulation of calcium-mediated signaling // inferred from electronic annotation /// 0050850 // positive regulation of calcium-mediated signaling // not recorded /// 0050853 // B cell receptor signaling pathway // inferred from electronic annotation /// 0050853 // B cell receptor signaling pathway // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0019815 // B cell receptor complex // inferred from electronic annotation /// 0019815 // B cell receptor complex // not recorded /// 0042101 // T cell receptor complex // inferred from electronic annotation /// 0042101 // T cell receptor complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // not recorded /// 0004716 // receptor signaling protein tyrosine kinase activity // inferred from electronic annotation /// 0004716 // receptor signaling protein tyrosine kinase activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from mutant phenotype 1368187_at NM_133298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133298.1 /DB_XREF=gi:18959233 /GEN=Gpnmb /FEA=FLmRNA /CNT=12 /TID=Rn.13778.1 /TIER=FL+Stack /STK=8 /UG=Rn.13778 /LL=113955 /DEF=Rattus norvegicus glycoprotein (transmembrane) nmb (Gpnmb), mRNA. /PROD=glycoprotein (transmembrane) nmb /FL=gb:NM_133298.1 gb:AF184983.2 NM_133298 glycoprotein (transmembrane) nmb Gpnmb 113955 NM_133298 0001649 // osteoblast differentiation // inferred from expression pattern /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0030282 // bone mineralization // inferred from expression pattern 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0042470 // melanosome // inferred from electronic annotation 0005178 // integrin binding // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded 1368188_at NM_017233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017233.1 /DB_XREF=gi:8393556 /GEN=Hpd /FEA=FLmRNA /CNT=12 /TID=Rn.3664.1 /TIER=FL+Stack /STK=8 /UG=Rn.3664 /LL=29531 /DEF=Rattus norvegicus 4-hydroxyphenylpyruvic acid dioxygenase (Hpd), mRNA. /PROD=4-hydroxyphenylpyruvic acid dioxygenase /FL=gb:NM_017233.1 gb:AF082834.1 NM_017233 4-hydroxyphenylpyruvate dioxygenase Hpd 29531 NM_017233 0006559 // L-phenylalanine catabolic process // inferred from electronic annotation /// 0006572 // tyrosine catabolic process // inferred from direct assay /// 0006572 // tyrosine catabolic process // traceable author statement /// 0006572 // tyrosine catabolic process // inferred from electronic annotation /// 0009072 // aromatic amino acid family metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0000139 // Golgi membrane // inferred from direct assay /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003868 // 4-hydroxyphenylpyruvate dioxygenase activity // inferred from direct assay /// 0003868 // 4-hydroxyphenylpyruvate dioxygenase activity // not recorded /// 0003868 // 4-hydroxyphenylpyruvate dioxygenase activity // traceable author statement /// 0003868 // 4-hydroxyphenylpyruvate dioxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368189_at NM_022389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022389.1 /DB_XREF=gi:11693157 /GEN=Dhcr7 /FEA=FLmRNA /CNT=11 /TID=Rn.228.1 /TIER=FL+Stack /STK=8 /UG=Rn.228 /LL=64191 /DEF=Rattus norvegicus 7-dehydrocholesterol reductase (Dhcr7), mRNA. /PROD=7-dehydrocholesterol reductase /FL=gb:AF071500.1 gb:NM_022389.1 gb:AB016800.1 NM_022389 7-dehydrocholesterol reductase Dhcr7 64191 NM_022389 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred by curator /// 0006695 // cholesterol biosynthetic process // inferred from direct assay /// 0006695 // cholesterol biosynthetic process // inferred from mutant phenotype /// 0006695 // cholesterol biosynthetic process // not recorded /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0016126 // sterol biosynthetic process // not recorded /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0045540 // regulation of cholesterol biosynthetic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005640 // nuclear outer membrane // inferred from electronic annotation /// 0005640 // nuclear outer membrane // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0047598 // 7-dehydrocholesterol reductase activity // inferred from mutant phenotype /// 0047598 // 7-dehydrocholesterol reductase activity // not recorded /// 0047598 // 7-dehydrocholesterol reductase activity // traceable author statement /// 0047598 // 7-dehydrocholesterol reductase activity // inferred from electronic annotation 1368190_at J02941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J02941.1 /DB_XREF=gi:206608 /FEA=FLmRNA /CNT=11 /TID=Rn.9831.1 /TIER=FL+Stack /STK=8 /UG=Rn.9831 /LL=24715 /UG_GENE=Ren /UG_TITLE=Renin /DEF=Rat renin mRNA, complete cds. /FL=gb:J02941.1 gb:NM_012642.1 J02941 renin Ren 24715 NM_012642 0001822 // kidney development // not recorded /// 0001822 // kidney development // inferred from electronic annotation /// 0001823 // mesonephros development // inferred from electronic annotation /// 0002003 // angiotensin maturation // inferred from electronic annotation /// 0002003 // angiotensin maturation // not recorded /// 0002016 // regulation of blood volume by renin-angiotensin // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0006950 // response to stress // inferred from direct assay /// 0008065 // establishment of blood-nerve barrier // not recorded /// 0008217 // regulation of blood pressure // inferred from mutant phenotype /// 0008217 // regulation of blood pressure // traceable author statement /// 0008584 // male gonad development // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0042493 // response to drug // inferred from direct assay /// 0042756 // drinking behavior // not recorded /// 0043408 // regulation of MAPKKK cascade // inferred from electronic annotation /// 0043408 // regulation of MAPKKK cascade // not recorded /// 0048469 // cell maturation // not recorded /// 0051591 // response to cAMP // inferred from direct assay /// 0070305 // response to cGMP // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0044444 // cytoplasmic part // inferred from direct assay 0004175 // endopeptidase activity // inferred from direct assay /// 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0004190 // aspartic-type endopeptidase activity // not recorded /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005159 // insulin-like growth factor receptor binding // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1368191_a_at U76379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U76379.1 /DB_XREF=gi:2343056 /FEA=FLmRNA /CNT=2 /TID=Rn.11186.2 /TIER=FL /STK=1 /UG=Rn.11186 /LL=24904 /UG_GENE=Slc22a1 /DEF=Rattus norvegicus organic cation transporter OCT1A mRNA, complete cds. /PROD=organic cation transporter OCT1A /FL=gb:U76379.1 U76379 solute carrier family 22 (organic cation transporter), member 1 Slc22a1 24904 NM_012697 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006855 // drug transmembrane transport // inferred from direct assay /// 0010248 // establishment or maintenance of transmembrane electrochemical gradient // inferred from direct assay /// 0015695 // organic cation transport // inferred from direct assay /// 0015695 // organic cation transport // not recorded /// 0015697 // quaternary ammonium group transport // inferred from direct assay /// 0015844 // monoamine transport // inferred from direct assay /// 0015872 // dopamine transport // inferred from direct assay /// 0015874 // norepinephrine transport // inferred from direct assay /// 0034220 // ion transmembrane transport // not recorded /// 0048241 // epinephrine transport // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016323 // basolateral plasma membrane // traceable author statement /// 0016323 // basolateral plasma membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005277 // acetylcholine transmembrane transporter activity // inferred from direct assay /// 0005329 // dopamine transmembrane transporter activity // inferred from direct assay /// 0005333 // norepinephrine transmembrane transporter activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0008504 // monoamine transmembrane transporter activity // inferred from direct assay /// 0008513 // secondary active organic cation transmembrane transporter activity // inferred from direct assay /// 0015075 // ion transmembrane transporter activity // inferred from electronic annotation /// 0015101 // organic cation transmembrane transporter activity // inferred from direct assay /// 0015101 // organic cation transmembrane transporter activity // not recorded /// 0015651 // quaternary ammonium group transmembrane transporter activity // inferred from direct assay 1368192_at NM_053415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053415.1 /DB_XREF=gi:16758151 /GEN=Gpr9 /FEA=FLmRNA /CNT=10 /TID=Rn.24787.1 /TIER=FL+Stack /STK=8 /UG=Rn.24787 /LL=84475 /DEF=Rattus norvegicus G protein-coupled receptor 9 (Gpr9), mRNA. /PROD=G protein-coupled receptor 9 /FL=gb:NM_053415.1 gb:AF223642.1 NM_053415 chemokine (C-X-C motif) receptor 3 Cxcr3 84475 NM_053415 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0019233 // sensory perception of pain // non-traceable author statement /// 0019722 // calcium-mediated signaling // inferred from direct assay 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004950 // chemokine receptor activity // inferred from direct assay /// 0016493 // C-C chemokine receptor activity // inferred from electronic annotation /// 0016494 // C-X-C chemokine receptor activity // inferred from physical interaction /// 0016494 // C-X-C chemokine receptor activity // inferred from electronic annotation 1368193_at NM_019214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019214.1 /DB_XREF=gi:9506964 /GEN=Slc26a4 /FEA=FLmRNA /CNT=9 /TID=Rn.11792.1 /TIER=FL+Stack /STK=8 /UG=Rn.11792 /LL=29440 /DEF=Rattus norvegicus solute carrier family 26, member 4 (Slc26a4), mRNA. /PROD=pendrin /FL=gb:NM_019214.1 gb:AF167412.1 NM_019214 solute carrier family 26, member 4 Slc26a4 29440 NM_019214 0006810 // transport // inferred from electronic annotation /// 0006885 // regulation of pH // not recorded /// 0006885 // regulation of pH // inferred from sequence or structural similarity /// 0006885 // regulation of pH // inferred from electronic annotation /// 0008272 // sulfate transport // inferred from electronic annotation /// 0015698 // inorganic anion transport // inferred from direct assay /// 0032880 // regulation of protein localization // not recorded /// 0032880 // regulation of protein localization // inferred from sequence or structural similarity /// 0032880 // regulation of protein localization // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from sequence or structural similarity /// 0016324 // apical plasma membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0008271 // secondary active sulfate transmembrane transporter activity // inferred from electronic annotation /// 0015108 // chloride transmembrane transporter activity // inferred from direct assay /// 0015111 // iodide transmembrane transporter activity // inferred from direct assay 1368194_at NM_133406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133406.1 /DB_XREF=gi:19173769 /GEN=Agpat4 /FEA=FLmRNA /CNT=9 /TID=Rn.41595.1 /TIER=FL+Stack /STK=8 /UG=Rn.41595 /DEF=Rattus norvegicus 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, delta) (Agpat4), mRNA. /PROD=1-acylglycerol-3-phosphate O-acyltransferase 1(lysophosphatidic acid acyltransferase, delta) /FL=gb:NM_133406.1 gb:AB067572.1 NM_133406 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta) Agpat4 170919 NM_133406 0008152 // metabolic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046027 // phospholipid:diacylglycerol acyltransferase activity // not recorded 1368195_at NM_134419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134419.1 /DB_XREF=gi:19705558 /GEN=Pass1 /FEA=FLmRNA /CNT=9 /TID=Rn.25280.1 /TIER=FL+Stack /STK=8 /UG=Rn.25280 /LL=171460 /DEF=Rattus norvegicus protein associating with small stress protein PASS1 (Pass1), mRNA. /PROD=protein associating with small stress proteinPASS1 /FL=gb:AF168362.1 gb:NM_134419.1 NM_134419 Hspb associated protein 1 Hspbap1 171460 NM_134419 0005737 // cytoplasm // inferred from electronic annotation 1368196_at NM_013139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013139.1 /DB_XREF=gi:6978664 /GEN=Clps /FEA=FLmRNA /CNT=9 /TID=Rn.6714.1 /TIER=FL+Stack /STK=8 /UG=Rn.6714 /LL=25680 /DEF=Rattus norvegicus Colipase pancreatic (Clps), mRNA. /PROD=colipase pancreatic /FL=gb:M33333.1 gb:NM_013139.1 gb:M58370.1 NM_013139 colipase, pancreatic Clps 25680 NM_013139 0007586 // digestion // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from expression pattern /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0032094 // response to food // inferred from expression pattern /// 0043085 // positive regulation of catalytic activity // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation 0005515 // protein binding // non-traceable author statement /// 0008047 // enzyme activator activity // inferred from direct assay /// 0008047 // enzyme activator activity // inferred from electronic annotation 1368197_at NM_017167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017167.1 /DB_XREF=gi:8393878 /GEN=Oprk1 /FEA=FLmRNA /CNT=13 /TID=Rn.10122.1 /TIER=FL+Stack /STK=8 /UG=Rn.10122 /LL=29335 /DEF=Rattus norvegicus opioid receptor, kappa 1 (Oprk1), mRNA. /PROD=opioid receptor, kappa 1 /FL=gb:L22001.1 gb:D16534.1 gb:NM_017167.1 gb:U00442.1 gb:D16829.1 gb:L22536.1 NM_017167 opioid receptor, kappa 1 Oprk1 29335 NM_017167 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004985 // opioid receptor activity // inferred from electronic annotation /// 0004987 // kappa-opioid receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368198_at D16534 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D16534.1 /DB_XREF=gi:409390 /GEN=ROR-D /FEA=FLmRNA /CNT=13 /TID=Rn.10122.1 /TIER=FL /STK=1 /UG=Rn.10122 /LL=29335 /DEF=Rat mRNA for opioid receptor, complete cds. /PROD=opioid receptor /FL=gb:L22001.1 gb:D16534.1 gb:NM_017167.1 gb:U00442.1 gb:D16829.1 gb:L22536.1 D16534 opioid receptor, kappa 1 Oprk1 29335 NM_017167 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004985 // opioid receptor activity // inferred from electronic annotation /// 0004987 // kappa-opioid receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368199_at NM_053616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053616.1 /DB_XREF=gi:16758977 /GEN=Prei2 /FEA=FLmRNA /CNT=13 /TID=Rn.11042.1 /TIER=FL+Stack /STK=8 /UG=Rn.11042 /LL=113929 /DEF=Rattus norvegicus preimplantation protein 2 (Prei2), mRNA. /PROD=preimplantation protein 2 /FL=gb:NM_053616.1 gb:U93692.1 NM_053616 nucleoporin 88 Nup88 113929 NM_053616 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from direct assay /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005829 // cytosol // not recorded 1368200_at NM_134455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134455.1 /DB_XREF=gi:19745169 /GEN=Scyd1 /FEA=FLmRNA /CNT=12 /TID=Rn.4106.1 /TIER=FL+Stack /STK=8 /UG=Rn.4106 /LL=89808 /DEF=Rattus norvegicus small inducible cytokine subfamily D, 1 (Scyd1), mRNA. /PROD=small inducible cytokine subfamily D, 1 /FL=gb:AF030358.2 gb:NM_134455.1 NM_134455 chemokine (C-X3-C motif) ligand 1 Cx3cl1 89808 NM_134455 0006935 // chemotaxis // inferred from direct assay /// 0006955 // immune response // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0030593 // neutrophil chemotaxis // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // not recorded /// 0032914 // positive regulation of transforming growth factor-beta1 production // inferred from electronic annotation /// 0032914 // positive regulation of transforming growth factor-beta1 production // not recorded /// 0042060 // wound healing // not recorded /// 0042060 // wound healing // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0048246 // macrophage chemotaxis // inferred from electronic annotation /// 0048246 // macrophage chemotaxis // not recorded /// 0048247 // lymphocyte chemotaxis // inferred from electronic annotation /// 0048247 // lymphocyte chemotaxis // not recorded /// 0050729 // positive regulation of inflammatory response // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // not recorded /// 0051041 // positive regulation of calcium-independent cell-cell adhesion // inferred from electronic annotation /// 0051041 // positive regulation of calcium-independent cell-cell adhesion // not recorded /// 0060055 // angiogenesis involved in wound healing // inferred from electronic annotation /// 0060055 // angiogenesis involved in wound healing // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008009 // chemokine activity // inferred from direct assay /// 0008009 // chemokine activity // not recorded /// 0008009 // chemokine activity // inferred from electronic annotation 1368201_at NM_012613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012613.1 /DB_XREF=gi:6981279 /GEN=Npr1 /FEA=FLmRNA /CNT=10 /TID=Rn.10463.1 /TIER=FL+Stack /STK=8 /UG=Rn.10463 /LL=24603 /DEF=Rattus norvegicus Natriuretic peptide receptor AGuanylate cyclase A (Npr1), mRNA. /PROD=natriuretic peptide receptor AGuanylate cyclaseA /FL=gb:NM_012613.1 gb:M74535.1 NM_012613 natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A) Npr1 24603 NM_012613 0006182 // cGMP biosynthetic process // inferred from direct assay /// 0006182 // cGMP biosynthetic process // not recorded /// 0006182 // cGMP biosynthetic process // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from mutant phenotype /// 0007168 // receptor guanylyl cyclase signaling pathway // inferred from electronic annotation /// 0007168 // receptor guanylyl cyclase signaling pathway // not recorded /// 0008217 // regulation of blood pressure // not recorded /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0030828 // positive regulation of cGMP biosynthetic process // inferred from mutant phenotype /// 0042417 // dopamine metabolic process // inferred from mutant phenotype /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0050880 // regulation of blood vessel size // inferred from electronic annotation 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // inferred from direct assay /// 0004383 // guanylate cyclase activity // not recorded /// 0004383 // guanylate cyclase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation /// 0008528 // peptide receptor activity, G-protein coupled // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation /// 0016941 // natriuretic peptide receptor activity // inferred from direct assay /// 0016941 // natriuretic peptide receptor activity // not recorded /// 0016941 // natriuretic peptide receptor activity // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred from direct assay /// 0019901 // protein kinase binding // inferred from mutant phenotype /// 0042562 // hormone binding // not recorded /// 0042562 // hormone binding // inferred from electronic annotation 1368202_a_at NM_024159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024159.1 /DB_XREF=gi:13162356 /GEN=Dab2 /FEA=FLmRNA /CNT=10 /TID=Rn.14763.1 /TIER=FL+Stack /STK=8 /UG=Rn.14763 /LL=79128 /DEF=Rattus norvegicus disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila) (Dab2), mRNA. /PROD=disabled homolog 2, mitogen-responsivephosphoprotein (Drosophila) /FL=gb:U95177.1 gb:NM_024159.1 NM_024159 disabled homolog 2 (Drosophila) Dab2 79128 NM_024159 0000904 // cell morphogenesis involved in differentiation // inferred from electronic annotation /// 0000904 // cell morphogenesis involved in differentiation // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006898 // receptor-mediated endocytosis // not recorded /// 0006907 // pinocytosis // inferred from electronic annotation /// 0006907 // pinocytosis // not recorded /// 0007588 // excretion // inferred from electronic annotation /// 0007588 // excretion // not recorded /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005905 // coated pit // inferred from electronic annotation /// 0005905 // coated pit // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030665 // clathrin coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded 1368203_at U54699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U54699.1 /DB_XREF=gi:2148925 /GEN=rEnaca /FEA=FLmRNA /CNT=10 /TID=Rn.9808.1 /TIER=FL /STK=2 /UG=Rn.9808 /LL=25122 /DEF=Rattus norvegicus epithelial sodium channel alpha subunit (rEnaca) mRNA, complete cds. /PROD=epithelial sodium channel alpha subunit /FL=gb:U54700.1 gb:NM_031548.1 gb:U54699.1 U54699 sodium channel, nonvoltage-gated, type I, alpha Scnn1a 25122 NM_031548 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // not recorded /// 0006814 // sodium ion transport // non-traceable author statement /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0008217 // regulation of blood pressure // traceable author statement /// 0034220 // ion transmembrane transport // not recorded /// 0050878 // regulation of body fluid levels // inferred from mutant phenotype /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // non-traceable author statement /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // inferred from direct assay /// 0034706 // sodium channel complex // inferred from electronic annotation /// 0034706 // sodium channel complex // not recorded 0003779 // actin binding // inferred from direct assay /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // not recorded /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015280 // ligand-gated sodium channel activity // inferred from direct assay /// 0015280 // ligand-gated sodium channel activity // inferred from electronic annotation /// 0015280 // ligand-gated sodium channel activity // not recorded /// 0015280 // ligand-gated sodium channel activity // non-traceable author statement /// 0050699 // WW domain binding // inferred from physical interaction /// 0050699 // WW domain binding // not recorded /// 0050699 // WW domain binding // inferred from electronic annotation 1368204_at NM_030855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030855.1 /DB_XREF=gi:13540672 /GEN=Lig1 /FEA=FLmRNA /CNT=10 /TID=Rn.20467.1 /TIER=FL+Stack /STK=8 /UG=Rn.20467 /LL=81513 /DEF=Rattus norvegicus DNA ligase I (Lig1), mRNA. /PROD=DNA ligase I /FL=gb:NM_030855.1 gb:AF276774.1 NM_030855 ligase I, DNA, ATP-dependent Lig1 81513 NM_001024268 /// NM_030855 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded /// 0006281 // DNA repair // inferred from direct assay /// 0006281 // DNA repair // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006297 // nucleotide-excision repair, DNA gap filling // not recorded /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0033151 // V(D)J recombination // not recorded /// 0051103 // DNA ligation involved in DNA repair // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003909 // DNA ligase activity // inferred from direct assay /// 0003909 // DNA ligase activity // not recorded /// 0003909 // DNA ligase activity // inferred from electronic annotation /// 0003910 // DNA ligase (ATP) activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368205_at NM_024157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024157.1 /DB_XREF=gi:13162352 /GEN=Cfi /FEA=FLmRNA /CNT=10 /TID=Rn.7424.1 /TIER=FL+Stack /STK=8 /UG=Rn.7424 /LL=79126 /DEF=Rattus norvegicus complement factor I (Cfi), mRNA. /PROD=complement factor I /FL=gb:NM_024157.1 NM_024157 complement factor I Cfi 79126 NM_024157 0006508 // proteolysis // inferred from electronic annotation /// 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1368206_at NM_130756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130756.1 /DB_XREF=gi:18543370 /GEN=Pte1 /FEA=FLmRNA /CNT=10 /TID=Rn.20141.1 /TIER=FL+Stack /STK=8 /UG=Rn.20141 /DEF=Rattus norvegicus peroxisomal acyl-CoA thioesterase 1 (Pte1), mRNA. /PROD=peroxisomal acyl-CoA thioesterase 1 /FL=gb:NM_130756.1 gb:AF452100.1 NM_130756 acyl-CoA thioesterase 8 Acot8 170588 NM_130756 0006637 // acyl-CoA metabolic process // inferred from electronic annotation /// 0006637 // acyl-CoA metabolic process // not recorded /// 0007031 // peroxisome organization // inferred from electronic annotation /// 0033540 // fatty acid beta-oxidation using acyl-CoA oxidase // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // inferred from electronic annotation 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016291 // acyl-CoA thioesterase activity // inferred from electronic annotation /// 0016291 // acyl-CoA thioesterase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0033882 // choloyl-CoA hydrolase activity // inferred from electronic annotation 1368207_at NM_021909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021909.1 /DB_XREF=gi:11612652 /GEN=Fxyd5 /FEA=FLmRNA /CNT=9 /TID=Rn.24997.1 /TIER=FL+Stack /STK=8 /UG=Rn.24997 /LL=60338 /DEF=Rattus norvegicus FXYD domain-containing ion transport regulator 5 (Fxyd5), mRNA. /PROD=related to ion channel /FL=gb:NM_021909.1 NM_021909 FXYD domain-containing ion transport regulator 5 Fxyd5 60338 NM_021909 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005216 // ion channel activity // inferred from electronic annotation /// 0045296 // cadherin binding // inferred from electronic annotation /// 0045296 // cadherin binding // not recorded 1368208_at NM_133558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133558.1 /DB_XREF=gi:19424237 /GEN=Cml1 /FEA=FLmRNA /CNT=9 /TID=Rn.3643.1 /TIER=FL+Stack /STK=8 /UG=Rn.3643 /DEF=Rattus norvegicus camello-like 1 (Cml1), mRNA. /PROD=camello-like 1 /FL=gb:AF163318.1 gb:NM_133558.1 NM_133558 N-acetyltransferase 8B Nat8b 171084 NM_133558 0001702 // gastrulation with mouth forming second // non-traceable author statement /// 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007369 // gastrulation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0008080 // N-acetyltransferase activity // non-traceable author statement /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368209_at NM_130401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130401.1 /DB_XREF=gi:18426815 /GEN=Map17 /FEA=FLmRNA /CNT=8 /TID=Rn.3605.1 /TIER=FL+Stack /STK=8 /UG=Rn.3605 /DEF=Rattus norvegicus membrane-associated protein 17 (Map17), mRNA. /PROD=membrane-associated protein 17 /FL=gb:NM_130401.1 gb:AF402772.1 NM_130401 PDZK1 interacting protein 1 Pdzk1ip1 81916 NM_130401 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1368210_at NM_133311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133311.1 /DB_XREF=gi:18959255 /GEN=Il24 /FEA=FLmRNA /CNT=8 /TID=Rn.48710.1 /TIER=FL+Stack /STK=8 /UG=Rn.48710 /LL=170819 /DEF=Rattus norvegicus interleukin 24 (Il24), mRNA. /PROD=interleukin 24 /FL=gb:AF004774.2 gb:AF269251.1 gb:NM_133311.1 NM_133311 interleukin 24 Il24 170819 NM_133311 0006915 // apoptosis // inferred from electronic annotation /// 0042060 // wound healing // traceable author statement /// 0048144 // fibroblast proliferation // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation 1368211_at NM_022672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022672.1 /DB_XREF=gi:12083606 /GEN=Rps14 /FEA=FLmRNA /CNT=88 /TID=Rn.36102.1 /TIER=FL+Stack /STK=7 /UG=Rn.36102 /LL=29284 /DEF=Rattus norvegicus ribosomal protein S14 (Rps14), mRNA. /PROD=ribosomal protein S14 /FL=gb:NM_022672.1 NM_022672 ribosomal protein S14 Rps14 29284 NM_022672 0000028 // ribosomal small subunit assembly // inferred from mutant phenotype /// 0000028 // ribosomal small subunit assembly // not recorded /// 0000028 // ribosomal small subunit assembly // inferred from sequence or structural similarity /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006412 // translation // not recorded /// 0006414 // translational elongation // not recorded /// 0030218 // erythrocyte differentiation // not recorded /// 0030490 // maturation of SSU-rRNA // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003735 // structural constituent of ribosome // inferred from mutant phenotype /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0045182 // translation regulator activity // not recorded /// 0048027 // mRNA 5'-UTR binding // not recorded 1368212_at NM_031021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031021.1 /DB_XREF=gi:13591929 /GEN=Csnk2b /FEA=FLmRNA /CNT=43 /TID=Rn.11095.1 /TIER=FL+Stack /STK=7 /UG=Rn.11095 /LL=81650 /DEF=Rattus norvegicus casein kinase II beta subunit (Csnk2b), mRNA. /PROD=casein kinase II beta subunit /FL=gb:L15619.1 gb:NM_031021.1 NM_031021 splicing factor, arginine/serine-rich 11 Sfrs11 502603 NM_001035255 0007249 // I-kappaB kinase/NF-kappaB cascade // traceable author statement /// 0008380 // RNA splicing // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030177 // positive regulation of Wnt receptor signaling pathway // traceable author statement /// 0033211 // adiponectin-mediated signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005956 // protein kinase CK2 complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0019887 // protein kinase regulator activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation 1368213_at AI407454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407454 /DB_XREF=gi:4250958 /DB_XREF=EST235743 /CLONE=ROVDT46 /FEA=FLmRNA /CNT=28 /TID=Rn.11359.1 /TIER=Stack /STK=16 /UG=Rn.11359 /LL=29441 /UG_GENE=Por /UG_TITLE=P450 (cytochrome) oxidoreductase /FL=gb:M10068.1 gb:M12516.1 gb:NM_031576.1 AI407454 P450 (cytochrome) oxidoreductase Por 29441 NM_031576 0008152 // metabolic process // not recorded /// 0032770 // positive regulation of monooxygenase activity // not recorded /// 0044237 // cellular metabolic process // not recorded /// 0046210 // nitric oxide catabolic process // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from direct assay /// 0055114 // oxidation reduction // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0071375 // cellular response to peptide hormone stimulus // inferred from expression pattern /// 0090181 // regulation of cholesterol metabolic process // inferred from mutant phenotype 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003958 // NADPH-hemoprotein reductase activity // inferred from direct assay /// 0003958 // NADPH-hemoprotein reductase activity // inferred from mutant phenotype /// 0003958 // NADPH-hemoprotein reductase activity // not recorded /// 0003958 // NADPH-hemoprotein reductase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0010181 // FMN binding // inferred from mutant phenotype /// 0010181 // FMN binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // not recorded /// 0019899 // enzyme binding // inferred from direct assay /// 0019899 // enzyme binding // inferred from mutant phenotype /// 0019899 // enzyme binding // inferred from physical interaction /// 0050660 // FAD or FADH2 binding // inferred from mutant phenotype /// 0050661 // NADP or NADPH binding // inferred from direct assay /// 0050661 // NADP or NADPH binding // inferred from mutant phenotype 1368214_at NM_019191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019191.1 /DB_XREF=gi:9506872 /GEN=Madh2 /FEA=FLmRNA /CNT=27 /TID=Rn.2755.1 /TIER=FL+Stack /STK=7 /UG=Rn.2755 /LL=29357 /DEF=Rattus norvegicus MAD homolog 2 (Drosophila) (Madh2), mRNA. /PROD=MAD homolog 2 /FL=gb:AB017912.1 gb:AF056001.1 gb:AB010147.1 gb:NM_019191.1 NM_019191 SMAD family member 2 Smad2 29357 NM_019191 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001707 // mesoderm formation // not recorded /// 0001707 // mesoderm formation // inferred from sequence or structural similarity /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from sequence or structural similarity /// 0007182 // common-partner SMAD protein phosphorylation // inferred from electronic annotation /// 0007182 // common-partner SMAD protein phosphorylation // not recorded /// 0007183 // SMAD protein complex assembly // inferred from electronic annotation /// 0007183 // SMAD protein complex assembly // not recorded /// 0007352 // zygotic specification of dorsal/ventral axis // inferred from electronic annotation /// 0007352 // zygotic specification of dorsal/ventral axis // not recorded /// 0007369 // gastrulation // inferred from electronic annotation /// 0007369 // gastrulation // not recorded /// 0007389 // pattern specification process // not recorded /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007492 // endoderm development // inferred from electronic annotation /// 0007492 // endoderm development // not recorded /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0009749 // response to glucose stimulus // inferred from electronic annotation /// 0009749 // response to glucose stimulus // not recorded /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0009880 // embryonic pattern specification // inferred from electronic annotation /// 0009880 // embryonic pattern specification // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from sequence or structural similarity /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from electronic annotation /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0023034 // intracellular signaling pathway // not recorded /// 0023034 // intracellular signaling pathway // inferred from sequence or structural similarity /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030073 // insulin secretion // inferred from electronic annotation /// 0030073 // insulin secretion // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0031016 // pancreas development // inferred from electronic annotation /// 0031016 // pancreas development // not recorded /// 0035265 // organ growth // inferred from electronic annotation /// 0035265 // organ growth // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045165 // cell fate commitment // inferred from sequence or structural similarity /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048340 // paraxial mesoderm morphogenesis // not recorded /// 0048340 // paraxial mesoderm morphogenesis // inferred from sequence or structural similarity /// 0048340 // paraxial mesoderm morphogenesis // inferred from electronic annotation /// 0048589 // developmental growth // inferred from electronic annotation /// 0048589 // developmental growth // not recorded /// 0048617 // embryonic foregut morphogenesis // inferred from electronic annotation /// 0048617 // embryonic foregut morphogenesis // not recorded /// 0048701 // embryonic cranial skeleton morphogenesis // inferred from electronic annotation /// 0048701 // embryonic cranial skeleton morphogenesis // not recorded /// 0051098 // regulation of binding // not recorded /// 0051098 // regulation of binding // inferred from sequence or structural similarity /// 0051098 // regulation of binding // inferred from electronic annotation /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded /// 0060039 // pericardium development // inferred from electronic annotation /// 0060039 // pericardium development // not recorded /// 0070723 // response to cholesterol // inferred from electronic annotation /// 0070723 // response to cholesterol // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005667 // transcription factor complex // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0032444 // activin responsive factor complex // inferred from electronic annotation /// 0032444 // activin responsive factor complex // not recorded /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003690 // double-stranded DNA binding // not recorded /// 0003690 // double-stranded DNA binding // inferred from sequence or structural similarity /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005160 // transforming growth factor beta receptor binding // not recorded /// 0005160 // transforming growth factor beta receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from sequence or structural similarity /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0030618 // transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity // inferred from electronic annotation /// 0030618 // transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0034713 // type I transforming growth factor beta receptor binding // inferred from electronic annotation /// 0034713 // type I transforming growth factor beta receptor binding // not recorded /// 0070410 // co-SMAD binding // inferred from electronic annotation /// 0070410 // co-SMAD binding // not recorded /// 0070411 // I-SMAD binding // inferred from electronic annotation /// 0070411 // I-SMAD binding // not recorded /// 0070412 // R-SMAD binding // inferred from electronic annotation /// 0070412 // R-SMAD binding // not recorded 1368215_at NM_031357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031357.1 /DB_XREF=gi:13786205 /GEN=Cln2 /FEA=FLmRNA /CNT=19 /TID=Rn.43558.1 /TIER=FL+Stack /STK=7 /UG=Rn.43558 /LL=83534 /DEF=Rattus norvegicus ceroid-lipofuscinosis, neuronal 2 (Cln2), mRNA. /PROD=ceroid-lipofuscinosis, neuronal 2 /FL=gb:NM_031357.1 gb:AB043870.1 NM_031357 tripeptidyl peptidase I Tpp1 83534 NM_031357 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // inferred from sequence or structural similarity /// 0006508 // proteolysis // inferred from electronic annotation /// 0007040 // lysosome organization // inferred from electronic annotation /// 0007040 // lysosome organization // not recorded /// 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from sequence or structural similarity /// 0007399 // nervous system development // inferred from electronic annotation /// 0043171 // peptide catabolic process // not recorded /// 0043171 // peptide catabolic process // inferred from sequence or structural similarity /// 0043171 // peptide catabolic process // inferred from electronic annotation /// 0045453 // bone resorption // not recorded /// 0045453 // bone resorption // inferred from sequence or structural similarity /// 0045453 // bone resorption // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded 0005625 // soluble fraction // not recorded /// 0005625 // soluble fraction // inferred from sequence or structural similarity /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from sequence or structural similarity /// 0005764 // lysosome // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0004175 // endopeptidase activity // inferred from direct assay /// 0004175 // endopeptidase activity // not recorded /// 0004175 // endopeptidase activity // inferred from sequence or structural similarity /// 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // not recorded /// 0008233 // peptidase activity // inferred from sequence or structural similarity /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // not recorded /// 0008236 // serine-type peptidase activity // inferred from sequence or structural similarity /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0008240 // tripeptidyl-peptidase activity // inferred from direct assay /// 0008240 // tripeptidyl-peptidase activity // not recorded /// 0008240 // tripeptidyl-peptidase activity // inferred from sequence or structural similarity /// 0008240 // tripeptidyl-peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay 1368216_at NM_053978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053978.1 /DB_XREF=gi:16758873 /GEN=Rab28 /FEA=FLmRNA /CNT=23 /TID=Rn.4023.1 /TIER=FL+Stack /STK=7 /UG=Rn.4023 /LL=117049 /DEF=Rattus norvegicus RAB28, member RAS oncogene family (Rab28), mRNA. /PROD=RAB28, member RAS oncogene family /FL=gb:NM_053978.1 NM_053978 RAB28, member RAS oncogene family Rab28 117049 NM_053978 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // not recorded /// 0019003 // GDP binding // inferred from sequence or structural similarity /// 0019003 // GDP binding // inferred from electronic annotation 1368217_at NM_032067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032067.1 /DB_XREF=gi:14091751 /GEN=Ralbp1 /FEA=FLmRNA /CNT=28 /TID=Rn.7107.1 /TIER=FL+Stack /STK=7 /UG=Rn.7107 /LL=84014 /DEF=Rattus norvegicus RalA binding protein 1 (Ralbp1), mRNA. /PROD=RalA binding protein 1 /FL=gb:U28830.1 gb:NM_032067.1 gb:U82623.1 NM_032067 ralA binding protein 1 Ralbp1 84014 NM_032067 0006810 // transport // inferred from electronic annotation /// 0006810 // transport // not recorded /// 0006897 // endocytosis // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0007052 // mitotic spindle organization // inferred from direct assay /// 0007067 // mitosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from physical interaction /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0043087 // regulation of GTPase activity // not recorded /// 0043089 // positive regulation of Cdc42 GTPase activity // not recorded /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0000922 // spindle pole // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0016887 // ATPase activity // not recorded /// 0017160 // Ral GTPase binding // not recorded /// 0030675 // Rac GTPase activator activity // not recorded /// 0043492 // ATPase activity, coupled to movement of substances // not recorded /// 0048365 // Rac GTPase binding // not recorded 1368218_at U28830 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U28830.1 /DB_XREF=gi:971248 /FEA=FLmRNA /CNT=28 /TID=Rn.7107.1 /TIER=FL /STK=1 /UG=Rn.7107 /LL=84014 /UG_GENE=Ralbp1 /DEF=Rattus norvegicus RalBP1 mRNA, complete cds. /PROD=RalBP1 /FL=gb:U28830.1 gb:NM_032067.1 gb:U82623.1 U28830 ralA binding protein 1 Ralbp1 84014 NM_032067 0006810 // transport // inferred from electronic annotation /// 0006810 // transport // not recorded /// 0006897 // endocytosis // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0007052 // mitotic spindle organization // inferred from direct assay /// 0007067 // mitosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from physical interaction /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0043087 // regulation of GTPase activity // not recorded /// 0043089 // positive regulation of Cdc42 GTPase activity // not recorded /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0000922 // spindle pole // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0016887 // ATPase activity // not recorded /// 0017160 // Ral GTPase binding // not recorded /// 0030675 // Rac GTPase activator activity // not recorded /// 0043492 // ATPase activity, coupled to movement of substances // not recorded /// 0048365 // Rac GTPase binding // not recorded 1368219_at NM_017137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017137.1 /DB_XREF=gi:8393137 /GEN=Clcn2 /FEA=FLmRNA /CNT=19 /TID=Rn.11073.1 /TIER=FL+Stack /STK=7 /UG=Rn.11073 /LL=29232 /DEF=Rattus norvegicus chloride channel 2 (Clcn2), mRNA. /PROD=chloride channel 2 /FL=gb:NM_017137.1 NM_017137 chloride channel 2 Clcn2 29232 NM_017137 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from direct assay /// 0006821 // chloride transport // not recorded /// 0006821 // chloride transport // inferred from electronic annotation /// 0030324 // lung development // inferred from mutant phenotype /// 0034765 // regulation of ion transmembrane transport // not recorded /// 0044070 // regulation of anion transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060689 // cell differentiation involved in salivary gland development // inferred from electronic annotation /// 0060689 // cell differentiation involved in salivary gland development // not recorded 0005626 // insoluble fraction // inferred from sequence or structural similarity /// 0015629 // actin cytoskeleton // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0043204 // perikaryon // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005247 // voltage-gated chloride channel activity // inferred from direct assay /// 0005247 // voltage-gated chloride channel activity // not recorded /// 0005247 // voltage-gated chloride channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation 1368220_at NM_031041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031041.1 /DB_XREF=gi:13591964 /GEN=Gtf2b /FEA=FLmRNA /CNT=15 /TID=Rn.6109.1 /TIER=FL+Stack /STK=7 /UG=Rn.6109 /LL=81673 /DEF=Rattus norvegicus general transcription factor IIB (Gtf2b), mRNA. /PROD=general transcription factor IIB /FL=gb:NM_031041.1 NM_031041 general transcription factor IIB Gtf2b 81673 NM_031041 0006350 // transcription // inferred from electronic annotation /// 0006352 // transcription initiation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0006413 // translational initiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046966 // thyroid hormone receptor binding // inferred from electronic annotation /// 0046966 // thyroid hormone receptor binding // not recorded 1368221_at NM_012576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012576.1 /DB_XREF=gi:6980987 /GEN=Nr3c1 /FEA=FLmRNA /CNT=34 /TID=Rn.29814.1 /TIER=FL+Stack /STK=7 /UG=Rn.29814 /LL=24413 /DEF=Rattus norvegicus nuclear receptor subfamily 3, group C, member 1 (Nr3c1), mRNA. /PROD=nuclear receptor subfamily 3, group C, member 1 /FL=gb:M14053.1 gb:AF455050.1 gb:NM_012576.1 gb:AY066016.2 NM_012576 nuclear receptor subfamily 3, group C, member 1 Nr3c1 24413 NM_012576 0006111 // regulation of gluconeogenesis // inferred from electronic annotation /// 0006111 // regulation of gluconeogenesis // not recorded /// 0006338 // chromatin remodeling // inferred from mutant phenotype /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0008211 // glucocorticoid metabolic process // inferred from electronic annotation /// 0008211 // glucocorticoid metabolic process // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030325 // adrenal gland development // inferred from electronic annotation /// 0030325 // adrenal gland development // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0031946 // regulation of glucocorticoid biosynthetic process // inferred from electronic annotation /// 0031946 // regulation of glucocorticoid biosynthetic process // not recorded /// 0042127 // regulation of cell proliferation // inferred from direct assay /// 0042921 // glucocorticoid receptor signaling pathway // not recorded /// 0042921 // glucocorticoid receptor signaling pathway // inferred from electronic annotation /// 0043402 // glucocorticoid mediated signaling pathway // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0046685 // response to arsenic // inferred from mutant phenotype /// 0048096 // chromatin-mediated maintenance of transcription // inferred from mutant phenotype /// 0051789 // response to protein stimulus // not recorded /// 0060603 // mammary gland duct morphogenesis // inferred from electronic annotation /// 0060603 // mammary gland duct morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from mutant phenotype /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0004883 // glucocorticoid receptor activity // inferred from mutant phenotype /// 0004883 // glucocorticoid receptor activity // not recorded /// 0004883 // glucocorticoid receptor activity // inferred from electronic annotation /// 0005496 // steroid binding // inferred from direct assay /// 0005496 // steroid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0030528 // transcription regulator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030971 // receptor tyrosine kinase binding // inferred from physical interaction /// 0031072 // heat shock protein binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046983 // protein dimerization activity // not recorded /// 0046983 // protein dimerization activity // traceable author statement /// 0046983 // protein dimerization activity // inferred from electronic annotation 1368222_at AY066016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY066016.2 /DB_XREF=gi:19343484 /FEA=FLmRNA /CNT=34 /TID=Rn.29814.1 /TIER=FL /STK=2 /UG=Rn.29814 /LL=24413 /UG_GENE=Nr3c1 /DEF=Rattus norvegicus strain BNCrl glucocorticoid receptor mRNA, complete cds. /PROD=glucocorticoid receptor /FL=gb:M14053.1 gb:AF455050.1 gb:NM_012576.1 gb:AY066016.2 AY066016 nuclear receptor subfamily 3, group C, member 1 Nr3c1 24413 NM_012576 0006111 // regulation of gluconeogenesis // inferred from electronic annotation /// 0006111 // regulation of gluconeogenesis // not recorded /// 0006338 // chromatin remodeling // inferred from mutant phenotype /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0008211 // glucocorticoid metabolic process // inferred from electronic annotation /// 0008211 // glucocorticoid metabolic process // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030325 // adrenal gland development // inferred from electronic annotation /// 0030325 // adrenal gland development // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0031946 // regulation of glucocorticoid biosynthetic process // inferred from electronic annotation /// 0031946 // regulation of glucocorticoid biosynthetic process // not recorded /// 0042127 // regulation of cell proliferation // inferred from direct assay /// 0042921 // glucocorticoid receptor signaling pathway // not recorded /// 0042921 // glucocorticoid receptor signaling pathway // inferred from electronic annotation /// 0043402 // glucocorticoid mediated signaling pathway // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0046685 // response to arsenic // inferred from mutant phenotype /// 0048096 // chromatin-mediated maintenance of transcription // inferred from mutant phenotype /// 0051789 // response to protein stimulus // not recorded /// 0060603 // mammary gland duct morphogenesis // inferred from electronic annotation /// 0060603 // mammary gland duct morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from mutant phenotype /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0004883 // glucocorticoid receptor activity // inferred from mutant phenotype /// 0004883 // glucocorticoid receptor activity // not recorded /// 0004883 // glucocorticoid receptor activity // inferred from electronic annotation /// 0005496 // steroid binding // inferred from direct assay /// 0005496 // steroid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0030528 // transcription regulator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030971 // receptor tyrosine kinase binding // inferred from physical interaction /// 0031072 // heat shock protein binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046983 // protein dimerization activity // not recorded /// 0046983 // protein dimerization activity // traceable author statement /// 0046983 // protein dimerization activity // inferred from electronic annotation 1368223_at NM_024400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024400.1 /DB_XREF=gi:13242315 /GEN=Adamts1 /FEA=FLmRNA /CNT=16 /TID=Rn.7897.1 /TIER=FL+Stack /STK=7 /UG=Rn.7897 /LL=79252 /DEF=Rattus norvegicus a disintegrin and metalloproteinase with thrombospondin motifs 1 (ADAMTS-1) (Adamts1), mRNA. /PROD=a disintegrin and metalloproteinase withthrombospondin motifs 1 /FL=gb:NM_024400.1 gb:AF304446.1 gb:AF149118.1 NM_024400 ADAM metallopeptidase with thrombospondin type 1 motif, 1 Adamts1 79252 NM_024400 0001542 // ovulation from ovarian follicle // inferred from electronic annotation /// 0001542 // ovulation from ovarian follicle // not recorded /// 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0060347 // heart trabecula formation // inferred from electronic annotation /// 0060347 // heart trabecula formation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368224_at NM_031531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031531.1 /DB_XREF=gi:13928715 /GEN=Spin2c /FEA=FLmRNA /CNT=16 /TID=Rn.128.1 /TIER=FL+Stack /STK=7 /UG=Rn.128 /LL=24795 /DEF=Rattus norvegicus Serine protease inhibitor (Spin2c), mRNA. /PROD=serine protease inhibitor 2c /FL=gb:NM_031531.1 NM_031531 serine (or cysteine) peptidase inhibitor, clade A, member 3N Serpina3n 24795 NM_031531 0006954 // inflammatory response // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from electronic annotation /// 0034097 // response to cytokine stimulus // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // not recorded 0000267 // cell fraction // inferred from direct assay /// 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1368225_at NM_134414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134414.1 /DB_XREF=gi:19705548 /GEN=Rsec5 /FEA=FLmRNA /CNT=13 /TID=Rn.2869.1 /TIER=FL+Stack /STK=7 /UG=Rn.2869 /LL=171455 /DEF=Rattus norvegicus Rsec5 protein (Rsec5), mRNA. /PROD=Rsec5 protein /FL=gb:AF032666.1 gb:NM_134414.1 NM_134414 exocyst complex component 2 Exoc2 171455 NM_134414 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0000145 // exocyst // inferred from direct assay 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017160 // Ral GTPase binding // inferred from electronic annotation /// 0017160 // Ral GTPase binding // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1368226_at NM_133525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133525.1 /DB_XREF=gi:19424173 /GEN=Rcl /FEA=FLmRNA /CNT=13 /TID=Rn.6997.1 /TIER=FL+Stack /STK=7 /UG=Rn.6997 /LL=171047 /DEF=Rattus norvegicus putative c-Myc-responsive (Rcl), mRNA. /PROD=putative c-Myc-responsive /FL=gb:U82591.1 gb:NM_133525.1 NM_133525 Nucleoside 2-deoxyribosyltransferase domain containing protein RGD620382 RGD620382 171047 NM_133525 0008152 // metabolic process // inferred from electronic annotation /// 0009117 // nucleotide metabolic process // inferred from electronic annotation /// 0009159 // deoxyribonucleoside monophosphate catabolic process // inferred from direct assay /// 0030307 // positive regulation of cell growth // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0070694 // deoxyribonucleoside 5'-monophosphate N-glycosidase activity // inferred from direct assay /// 0070694 // deoxyribonucleoside 5'-monophosphate N-glycosidase activity // inferred from electronic annotation 1368227_at NM_031664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031664.1 /DB_XREF=gi:13928919 /GEN=Slc28a2 /FEA=FLmRNA /CNT=14 /TID=Rn.10140.1 /TIER=FL+Stack /STK=7 /UG=Rn.10140 /LL=60423 /DEF=Rattus norvegicus solute carrier family 28 (sodium-coupled nucleoside transporter), member 2 (Slc28a2), mRNA. /PROD=solute carrier family 28 (sodium-couplednucleoside transporter), member 2 /FL=gb:NM_031664.1 gb:U25055.1 gb:U66723.1 gb:AY029302.1 NM_031664 solute carrier family 28 (sodium-coupled nucleoside transporter), member 2 Slc28a2 60423 NM_031664 0001895 // retina homeostasis // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0034394 // protein localization at cell surface // inferred from direct assay /// 0035427 // purine nucleoside transmembrane transport // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001882 // nucleoside binding // inferred from electronic annotation /// 0005337 // nucleoside transmembrane transporter activity // inferred from direct assay /// 0005415 // nucleoside:sodium symporter activity // inferred from direct assay /// 0005415 // nucleoside:sodium symporter activity // inferred from electronic annotation /// 0015211 // purine nucleoside transmembrane transporter activity // not recorded 1368228_at NM_031616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031616.1 /DB_XREF=gi:13928843 /GEN=Znf265 /FEA=FLmRNA /CNT=14 /TID=Rn.11361.1 /TIER=FL+Stack /STK=7 /UG=Rn.11361 /LL=58821 /DEF=Rattus norvegicus zinc finger protein 265 (Znf265), mRNA. /PROD=zinc finger protein 265 /FL=gb:AF013967.1 gb:NM_031616.1 gb:AF013965.1 NM_031616 zinc finger, RAN-binding domain containing 2 Zranb2 58821 NM_031616 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368229_at NM_053389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053389.1 /DB_XREF=gi:16758117 /GEN=Sip1 /FEA=FLmRNA /CNT=14 /TID=Rn.34143.1 /TIER=FL+Stack /STK=7 /UG=Rn.34143 /LL=84404 /DEF=Rattus norvegicus survival of motor neuron protein interacting protein 1 (Sip1), mRNA. /PROD=survival of motor neuron protein interactingprotein 1 /FL=gb:NM_053389.1 gb:AF176072.1 NM_053389 survival of motor neuron protein interacting protein 1 Sip1 84404 NM_053389 0000245 // spliceosome assembly // inferred from electronic annotation /// 0000387 // spliceosomal snRNP assembly // not recorded /// 0000398 // nuclear mRNA splicing, via spliceosome // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0015030 // Cajal body // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368230_a_at U95161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U95161.1 /DB_XREF=gi:2078536 /FEA=FLmRNA /CNT=1 /TID=Rn.40118.3 /TIER=FL /STK=1 /UG=Rn.40118 /LL=56769 /UG_GENE=LOC56769 /DEF=Rattus norvegicus nuclear protein E3-3 orf2 mRNA, complete cds. /PROD=nuclear protein E3-3 orf2 /FL=gb:U95161.1 U95161 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3 Ndufaf3 56769 NM_001033971 /// NM_020080 0032981 // mitochondrial respiratory chain complex I assembly // inferred from electronic annotation /// 0032981 // mitochondrial respiratory chain complex I assembly // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368231_at NM_017064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017064.1 /DB_XREF=gi:8394372 /GEN=Stat5a /FEA=FLmRNA /CNT=11 /TID=Rn.11355.1 /TIER=FL+Stack /STK=7 /UG=Rn.11355 /LL=24918 /DEF=Rattus norvegicus Signal transducer and activator of transcription 5a (Stat5a), mRNA. /PROD=signal transducer and activator of transcription5a /FL=gb:U24175.1 gb:NM_017064.1 NM_017064 signal transducer and activator of transcription 5A Stat5a 24918 NM_017064 0001553 // luteinization // not recorded /// 0001779 // natural killer cell differentiation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007259 // JAK-STAT cascade // inferred from direct assay /// 0007259 // JAK-STAT cascade // not recorded /// 0007565 // female pregnancy // not recorded /// 0007595 // lactation // inferred from expression pattern /// 0007595 // lactation // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0019218 // regulation of steroid metabolic process // not recorded /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019915 // lipid storage // not recorded /// 0030155 // regulation of cell adhesion // not recorded /// 0030856 // regulation of epithelial cell differentiation // not recorded /// 0030879 // mammary gland development // not recorded /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032825 // positive regulation of natural killer cell differentiation // not recorded /// 0033026 // negative regulation of mast cell apoptosis // not recorded /// 0033077 // T cell differentiation in thymus // not recorded /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0042104 // positive regulation of activated T cell proliferation // not recorded /// 0043029 // T cell homeostasis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043434 // response to peptide hormone stimulus // not recorded /// 0045086 // positive regulation of interleukin-2 biosynthetic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from expression pattern /// 0045579 // positive regulation of B cell differentiation // not recorded /// 0045588 // positive regulation of gamma-delta T cell differentiation // not recorded /// 0045621 // positive regulation of lymphocyte differentiation // not recorded /// 0045647 // negative regulation of erythrocyte differentiation // not recorded /// 0045885 // positive regulation of survival gene product expression // not recorded /// 0045931 // positive regulation of mitotic cell cycle // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // not recorded /// 0046543 // development of secondary female sexual characteristics // not recorded /// 0046544 // development of secondary male sexual characteristics // not recorded /// 0048541 // Peyer's patch development // not recorded /// 0048609 // multicellular organismal reproductive process // inferred from expression pattern /// 0050729 // positive regulation of inflammatory response // not recorded /// 0060056 // mammary gland involution // inferred from direct assay /// 0060376 // positive regulation of mast cell differentiation // not recorded /// 0060740 // prostate gland epithelium morphogenesis // not recorded /// 0060742 // epithelial cell differentiation involved in prostate gland development // not recorded /// 0070668 // positive regulation of mast cell proliferation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay 1368232_at NM_031063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031063.1 /DB_XREF=gi:13592006 /GEN=Mvk /FEA=FLmRNA /CNT=16 /TID=Rn.6995.1 /TIER=FL+Stack /STK=7 /UG=Rn.6995 /LL=81727 /DEF=Rattus norvegicus mevalonate kinase (Mvk), mRNA. /PROD=mevalonate kinase /FL=gb:M29472.1 gb:NM_031063.1 NM_031063 mevalonate kinase Mvk 81727 NM_031063 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0006720 // isoprenoid metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008299 // isoprenoid biosynthetic process // inferred from direct assay /// 0008299 // isoprenoid biosynthetic process // not recorded /// 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0016125 // sterol metabolic process // traceable author statement /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0016310 // phosphorylation // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from direct assay /// 0019287 // isopentenyl diphosphate biosynthetic process, mevalonate pathway // inferred from direct assay /// 0045540 // regulation of cholesterol biosynthetic process // non-traceable author statement 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from direct assay /// 0004496 // mevalonate kinase activity // inferred from direct assay /// 0004496 // mevalonate kinase activity // not recorded /// 0004496 // mevalonate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1368233_at NM_031042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031042.1 /DB_XREF=gi:13591966 /GEN=Gtf2f2 /FEA=FLmRNA /CNT=14 /TID=Rn.11000.1 /TIER=FL+Stack /STK=7 /UG=Rn.11000 /LL=81674 /DEF=Rattus norvegicus general transcription factor IIF, polypeptide 2 (30kD subunit) (Gtf2f2), mRNA. /PROD=general transcription factor IIF, polypeptide 2(30kD subunit) /FL=gb:D10665.1 gb:L01267.1 gb:NM_031042.1 NM_031042 general transcription factor IIF, polypeptide 2 Gtf2f2 81674 NM_031042 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0008380 // RNA splicing // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from physical interaction 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005674 // transcription factor TFIIF complex // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from physical interaction /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016251 // general RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1368234_at NM_031324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031324.1 /DB_XREF=gi:13786143 /GEN=Prep /FEA=FLmRNA /CNT=13 /TID=Rn.11058.1 /TIER=FL+Stack /STK=7 /UG=Rn.11058 /LL=83471 /DEF=Rattus norvegicus prolyl endopeptidase (Prep), mRNA. /PROD=prolyl endopeptidase /FL=gb:NM_031324.1 gb:AB012759.1 NM_031324 prolyl endopeptidase Prep 83471 NM_031324 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay 0004175 // endopeptidase activity // inferred from direct assay /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay 1368235_at NM_134340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134340.1 /DB_XREF=gi:19705446 /GEN=Clk3 /FEA=FLmRNA /CNT=11 /TID=Rn.10340.1 /TIER=FL+Stack /STK=7 /UG=Rn.10340 /LL=171305 /DEF=Rattus norvegicus CDC-like kinase 3 (Clk3), mRNA. /PROD=CDC-like kinase 3 /FL=gb:NM_134340.1 NM_134340 CDC-like kinase 3 Clk3 171305 NM_134340 0006468 // protein phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // not recorded 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368236_at NM_013143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013143.1 /DB_XREF=gi:6981195 /GEN=Mep1a /FEA=FLmRNA /CNT=10 /TID=Rn.16265.1 /TIER=FL+Stack /STK=7 /UG=Rn.16265 /DEF=Rattus norvegicus Meprin 1 alpha (Mep1a), mRNA. /PROD=meprin 1 alpha /FL=gb:NM_013143.1 NM_013143 meprin 1 alpha Mep1a 25684 NM_013143 0006508 // proteolysis // non-traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0017090 // meprin A complex // inferred from direct assay 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368237_at NM_022290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022290.1 /DB_XREF=gi:11560122 /GEN=Tnmd /FEA=FLmRNA /CNT=10 /TID=Rn.26691.1 /TIER=FL+Stack /STK=7 /UG=Rn.26691 /LL=64104 /DEF=Rattus norvegicus tenomodulin (Tnmd), mRNA. /PROD=myodulin /FL=gb:AB055423.1 gb:NM_022290.1 gb:AF191769.1 NM_022290 tenomodulin Tnmd 64104 NM_022290 0009986 // cell surface // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1368238_at NM_053289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053289.1 /DB_XREF=gi:16757981 /GEN=Pap1 /FEA=FLmRNA /CNT=10 /TID=Rn.9727.1 /TIER=FL+Stack /STK=7 /UG=Rn.9727 /LL=24618 /DEF=Rattus norvegicus Pancreatitis-associated protein 1 (Pap1), mRNA. /PROD=pancreatitis-associated protein 1 /FL=gb:M98049.1 gb:NM_053289.1 gb:S77413.1 gb:M55149.1 NM_053289 regenerating islet-derived 3 beta Reg3b 24618 NM_053289 0006953 // acute-phase response // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1368239_at NM_053541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053541.1 /DB_XREF=gi:16758309 /GEN=Lrp3 /FEA=FLmRNA /CNT=16 /TID=Rn.23204.1 /TIER=FL+Stack /STK=7 /UG=Rn.23204 /LL=89787 /DEF=Rattus norvegicus low density lipoprotein receptor-related protein 3 (Lrp3), mRNA. /PROD=low density lipoprotein receptor-related protein3 /FL=gb:AB009463.1 gb:NM_053541.1 NM_053541 low density lipoprotein receptor-related protein 3 Lrp3 89787 NM_053541 0006897 // endocytosis // inferred from electronic annotation 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1368240_a_at M13706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M13706.1 /DB_XREF=gi:206188 /FEA=FLmRNA /CNT=4 /TID=Rn.9745.2 /TIER=FL /STK=1 /UG=Rn.9745 /LL=25023 /UG_GENE=Prkcb1 /UG_TITLE=Protein kinase C beta /DEF=Rat protein kinase C type II mRNA, complete cds, clone PKC-II. /FL=gb:M13706.1 M13706 protein kinase C, beta Prkcb 25023 NM_001172305 /// NM_012713 0006350 // transcription // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006816 // calcium ion transport // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0014059 // regulation of dopamine secretion // inferred from mutant phenotype /// 0016568 // chromatin modification // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // non-traceable author statement /// 0033280 // response to vitamin D // inferred from expression pattern /// 0034339 // regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor // not recorded /// 0034339 // regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor // inferred from sequence or structural similarity /// 0035408 // histone H3-T6 phosphorylation // not recorded /// 0035408 // histone H3-T6 phosphorylation // inferred from sequence or structural similarity /// 0040008 // regulation of growth // inferred from mutant phenotype /// 0042113 // B cell activation // not recorded /// 0042113 // B cell activation // inferred from sequence or structural similarity /// 0042113 // B cell activation // inferred from electronic annotation /// 0042488 // positive regulation of odontogenesis of dentine-containing tooth // inferred from expression pattern /// 0042493 // response to drug // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from sequence or structural similarity /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from expression pattern /// 0050853 // B cell receptor signaling pathway // not recorded /// 0050853 // B cell receptor signaling pathway // inferred from sequence or structural similarity /// 0050853 // B cell receptor signaling pathway // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004697 // protein kinase C activity // inferred from direct assay /// 0004697 // protein kinase C activity // not recorded /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0005080 // protein kinase C binding // not recorded /// 0005246 // calcium channel regulator activity // not recorded /// 0005246 // calcium channel regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from sequence or structural similarity /// 0035403 // histone kinase activity (H3-T6 specific) // not recorded /// 0035403 // histone kinase activity (H3-T6 specific) // inferred from sequence or structural similarity /// 0042393 // histone binding // not recorded /// 0042393 // histone binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // not recorded /// 0050681 // androgen receptor binding // inferred from sequence or structural similarity 1368241_a_at NM_022701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022701.1 /DB_XREF=gi:12083662 /GEN=Flot1 /FEA=FLmRNA /CNT=11 /TID=Rn.9567.1 /TIER=FL+Stack /STK=7 /UG=Rn.9567 /LL=64665 /DEF=Rattus norvegicus flotillin 1 (Flot1), mRNA. /PROD=flotillin 1 /FL=gb:U60977.1 gb:NM_022701.1 NM_022701 flotillin 1 Flot1 64665 NM_022701 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005815 // microtubule organizing center // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005901 // caveola // inferred from direct assay /// 0005901 // caveola // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016600 // flotillin complex // inferred from direct assay /// 0016600 // flotillin complex // inferred from physical interaction /// 0016600 // flotillin complex // not recorded /// 0034451 // centriolar satellite // inferred from electronic annotation /// 0034451 // centriolar satellite // not recorded /// 0042470 // melanosome // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction 1368242_at NM_013186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013186.1 /DB_XREF=gi:6981119 /GEN=Kcnb1 /FEA=FLmRNA /CNT=10 /TID=Rn.26724.1 /TIER=FL+Stack /STK=7 /UG=Rn.26724 /LL=25736 /DEF=Rattus norvegicus Potassium voltage gated channel, Shab-related subfamily, member 1 (Kcnb1), mRNA. /PROD=potassium voltage gated channel, Shab-relatedsubfamily, member 1 /FL=gb:NM_013186.1 NM_013186 potassium voltage gated channel, Shab-related subfamily, member 1 Kcnb1 25736 NM_013186 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from direct assay /// 0006813 // potassium ion transport // inferred from mutant phenotype /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0051259 // protein oligomerization // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from mutant phenotype /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0032590 // dendrite membrane // inferred from direct assay /// 0032809 // neuronal cell body membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from direct assay /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005251 // delayed rectifier potassium channel activity // inferred from direct assay /// 0005251 // delayed rectifier potassium channel activity // inferred from mutant phenotype /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0015271 // outward rectifier potassium channel activity // inferred from mutant phenotype /// 0047485 // protein N-terminus binding // inferred from physical interaction 1368243_at NM_030998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030998.1 /DB_XREF=gi:13591889 /GEN=Amhr2 /FEA=FLmRNA /CNT=10 /TID=Rn.10165.1 /TIER=FL+Stack /STK=7 /UG=Rn.10165 /LL=29530 /DEF=Rattus norvegicus anti-Mullerian hormone type 2 receptor (Amhr2), mRNA. /PROD=anti-Mullerian hormone type 2 receptor /FL=gb:U42427.1 gb:NM_030998.1 NM_030998 anti-Mullerian hormone receptor, type II Amhr2 29530 NM_030998 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from sequence or structural similarity /// 0007165 // signal transduction // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0007548 // sex differentiation // not recorded /// 0007548 // sex differentiation // inferred from sequence or structural similarity /// 0007548 // sex differentiation // inferred from electronic annotation 0005887 // integral to plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // inferred from direct assay /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // not recorded /// 0004872 // receptor activity // inferred from sequence or structural similarity /// 0004872 // receptor activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta receptor activity // inferred from electronic annotation /// 0005026 // transforming growth factor beta receptor activity, type II // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042562 // hormone binding // not recorded /// 0042562 // hormone binding // inferred from sequence or structural similarity /// 0042562 // hormone binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368244_at NM_080890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080890.1 /DB_XREF=gi:18376836 /GEN=Cyt19 /FEA=FLmRNA /CNT=9 /TID=Rn.41876.1 /TIER=FL+Stack /STK=7 /UG=Rn.41876 /DEF=Rattus norvegicus methyltransferase Cyt19 (Cyt19), mRNA. /PROD=methyltransferase Cyt19 /FL=gb:AF393243.1 gb:NM_080890.1 NM_080890 arsenic (+3 oxidation state) methyltransferase As3mt 140925 NM_080890 0008152 // metabolic process // inferred from electronic annotation /// 0009404 // toxin metabolic process // inferred from direct assay /// 0018872 // arsonoacetate metabolic process // inferred from direct assay /// 0046685 // response to arsenic // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008276 // protein methyltransferase activity // traceable author statement /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0030791 // arsenite methyltransferase activity // inferred from direct assay /// 0030791 // arsenite methyltransferase activity // inferred from electronic annotation /// 0030792 // methylarsonite methyltransferase activity // inferred from direct assay 1368245_at NM_053845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053845.1 /DB_XREF=gi:16758703 /GEN=Upb1 /FEA=FLmRNA /CNT=9 /TID=Rn.11110.1 /TIER=FL+Stack /STK=7 /UG=Rn.11110 /LL=116593 /DEF=Rattus norvegicus ureidopropionase, beta (Upb1), mRNA. /PROD=ureidopropionase, beta /FL=gb:M97662.1 gb:NM_053845.1 NM_053845 ureidopropionase, beta Upb1 116593 NM_053845 0006807 // nitrogen compound metabolic process // inferred from electronic annotation /// 0009790 // embryo development // inferred from expression pattern /// 0019482 // beta-alanine metabolic process // inferred from direct assay /// 0019483 // beta-alanine biosynthetic process // traceable author statement 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003837 // beta-ureidopropionase activity // inferred from direct assay /// 0003837 // beta-ureidopropionase activity // not recorded /// 0003837 // beta-ureidopropionase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368246_at NM_133305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133305.1 /DB_XREF=gi:18959245 /GEN=Ap3m2 /FEA=FLmRNA /CNT=16 /TID=Rn.11007.1 /TIER=FL+Stack /STK=7 /UG=Rn.11007 /LL=140667 /DEF=Rattus norvegicus adaptor-related protein complex 3, mu 2 subunit (Ap3m2), mRNA. /PROD=adaptor-related protein complex 3, mu 2 subunit /FL=gb:L07074.1 gb:NM_133305.1 NM_133305 adaptor-related protein complex 3, mu 2 subunit Ap3m2 140667 NM_133305 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // non-traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0046907 // intracellular transport // non-traceable author statement 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1368247_at NM_031971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031971.1 /DB_XREF=gi:14010866 /GEN=Hspa1a /FEA=FLmRNA /CNT=15 /TID=Rn.1950.1 /TIER=FL+Stack /STK=7 /UG=Rn.1950 /LL=24472 /DEF=Rattus norvegicus Heat shock protein 70-1 (Hspa1a), mRNA. /PROD=heat shock protein 70-1 /FL=gb:NM_031971.1 gb:L16764.1 NM_031971 heat shock 70kD protein 1A /// heat shock 70kD protein 1B (mapped) Hspa1a /// Hspa1b 24472 /// 294254 NM_031971 /// NM_212504 0000723 // telomere maintenance // not recorded /// 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from direct assay /// 0006281 // DNA repair // not recorded /// 0006402 // mRNA catabolic process // not recorded /// 0006402 // mRNA catabolic process // inferred from sequence or structural similarity /// 0006916 // anti-apoptosis // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0006952 // defense response // inferred from direct assay /// 0006986 // response to unfolded protein // inferred from mutant phenotype /// 0006986 // response to unfolded protein // not recorded /// 0006986 // response to unfolded protein // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0009408 // response to heat // not recorded /// 0030308 // negative regulation of cell growth // not recorded /// 0030308 // negative regulation of cell growth // inferred from sequence or structural similarity /// 0033033 // negative regulation of myeloid cell apoptosis // inferred from direct assay /// 0042026 // protein refolding // not recorded /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0043154 // negative regulation of caspase activity // inferred from direct assay /// 0043154 // negative regulation of caspase activity // not recorded /// 0045906 // negative regulation of vasoconstriction // inferred from mutant phenotype /// 0090084 // negative regulation of inclusion body assembly // not recorded 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0016234 // inclusion body // not recorded /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016607 // nuclear speck // not recorded /// 0016607 // nuclear speck // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0044444 // cytoplasmic part // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0002020 // protease binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0044183 // protein binding involved in protein folding // not recorded /// 0047485 // protein N-terminus binding // not recorded /// 0051059 // NF-kappaB binding // inferred from physical interaction 1368248_at NM_031242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031242.1 /DB_XREF=gi:13676852 /GEN=Cds1 /FEA=FLmRNA /CNT=14 /TID=Rn.18983.1 /TIER=FL+Stack /STK=7 /UG=Rn.18983 /LL=81925 /DEF=Rattus norvegicus CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1 (Cds1), mRNA. /PROD=CDP-diacylglycerol synthase (phosphatidatecytidylyltransferase) 1 /FL=gb:NM_031242.1 gb:AB009999.1 NM_031242 CDP-diacylglycerol synthase 1 Cds1 81925 NM_031242 0008654 // phospholipid biosynthetic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004605 // phosphatidate cytidylyltransferase activity // inferred from direct assay /// 0004605 // phosphatidate cytidylyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1368249_at NM_053536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053536.1 /DB_XREF=gi:16758965 /GEN=Klf15 /FEA=FLmRNA /CNT=10 /TID=Rn.24978.1 /TIER=FL+Stack /STK=7 /UG=Rn.24978 /LL=85497 /DEF=Rattus norvegicus Kruppel-like factor 15 (kidney) (Klf15), mRNA. /PROD=Kruppel-like factor 15 (kidney) /FL=gb:AB020759.1 gb:NM_053536.1 NM_053536 Kruppel-like factor 15 Klf15 85497 NM_053536 0015758 // glucose transport // not recorded /// 0015758 // glucose transport // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1368250_at NM_053508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053508.1 /DB_XREF=gi:16758267 /GEN=Tekt1 /FEA=FLmRNA /CNT=10 /TID=Rn.46442.1 /TIER=FL+Stack /STK=7 /UG=Rn.46442 /LL=85270 /DEF=Rattus norvegicus tektin 1 (Tekt1), mRNA. /PROD=tektin 1 /FL=gb:NM_053508.1 NM_053508 tektin 1 Tekt1 85270 NM_053508 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation /// 0005874 // microtubule // not recorded 1368251_at NM_012855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012855.1 /DB_XREF=gi:6981113 /GEN=Jak3 /FEA=FLmRNA /CNT=9 /TID=Rn.11159.1 /TIER=FL+Stack /STK=7 /UG=Rn.11159 /LL=25326 /DEF=Rattus norvegicus Janus kinase 3, protein-tyrosine kinase (Jak3), mRNA. /PROD=janus kinase 3, protein-tyrosine kinase /FL=gb:D28508.1 gb:NM_012855.1 NM_012855 Janus kinase 3 Jak3 25326 NM_012855 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007167 // enzyme linked receptor protein signaling pathway // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from direct assay /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0042104 // positive regulation of activated T cell proliferation // inferred from mutant phenotype /// 0042506 // tyrosine phosphorylation of Stat5 protein // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046777 // protein autophosphorylation // inferred from mutant phenotype /// 0050778 // positive regulation of immune response // inferred from mutant phenotype /// 0051928 // positive regulation of calcium ion transport // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from mutant phenotype /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred by curator /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368252_at NM_057191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057191.1 /DB_XREF=gi:17105343 /GEN=Sarcosin /FEA=FLmRNA /CNT=9 /TID=Rn.28875.1 /TIER=FL+Stack /STK=7 /UG=Rn.28875 /LL=117537 /DEF=Rattus norvegicus sarcomeric muscle protein (Sarcosin), mRNA. /PROD=sarcomeric muscle protein /FL=gb:NM_057191.1 NM_057191 kelch repeat and BTB (POZ) domain containing 10 Kbtbd10 117537 NM_057191 0006928 // cellular component movement // non-traceable author statement /// 0031275 // regulation of lateral pseudopodium assembly // inferred from mutant phenotype 0001726 // ruffle // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0031143 // pseudopodium // inferred from direct assay /// 0031143 // pseudopodium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation 1368253_at NM_012793 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012793.1 /DB_XREF=gi:6978872 /GEN=Gamt /FEA=FLmRNA /CNT=9 /TID=Rn.33890.1 /TIER=FL+Stack /STK=7 /UG=Rn.33890 /LL=25257 /DEF=Rattus norvegicus Guanidinoacetate methyltransferase (Gamt), mRNA. /PROD=guanidinoacetate methyltransferase /FL=gb:NM_012793.1 gb:J03588.1 NM_012793 guanidinoacetate N-methyltransferase Gamt 25257 NM_012793 0006600 // creatine metabolic process // not recorded /// 0006601 // creatine biosynthetic process // inferred from direct assay /// 0006601 // creatine biosynthetic process // not recorded /// 0006601 // creatine biosynthetic process // traceable author statement /// 0007283 // spermatogenesis // not recorded /// 0009887 // organ morphogenesis // not recorded /// 0040014 // regulation of multicellular organism growth // not recorded /// 0046498 // S-adenosylhomocysteine metabolic process // inferred from direct assay /// 0046500 // S-adenosylmethionine metabolic process // inferred from direct assay 0005829 // cytosol // not recorded 0008168 // methyltransferase activity // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0030731 // guanidinoacetate N-methyltransferase activity // inferred from direct assay /// 0030731 // guanidinoacetate N-methyltransferase activity // not recorded /// 0030731 // guanidinoacetate N-methyltransferase activity // inferred from sequence or structural similarity /// 0030731 // guanidinoacetate N-methyltransferase activity // non-traceable author statement /// 0030731 // guanidinoacetate N-methyltransferase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay 1368254_a_at AB049572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB049572.1 /DB_XREF=gi:15054465 /GEN=sphk1c /FEA=FLmRNA /CNT=3 /TID=Rn.18522.2 /TIER=FL /STK=1 /UG=Rn.18522 /DEF=Rattus norvegicus sphk1c mRNA for sphingosine kinase 1c, complete cds. /PROD=sphingosine kinase 1c /FL=gb:AB049572.1 AB049572 sphingosine kinase 1 Sphk1 170897 NM_133386 0001568 // blood vessel development // not recorded /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0001956 // positive regulation of neurotransmitter secretion // inferred from mutant phenotype /// 0006670 // sphingosine metabolic process // not recorded /// 0006670 // sphingosine metabolic process // inferred from sequence or structural similarity /// 0006954 // inflammatory response // not recorded /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007565 // female pregnancy // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // not recorded /// 0009267 // cellular response to starvation // inferred from expression pattern /// 0010803 // regulation of tumor necrosis factor-mediated signaling pathway // not recorded /// 0010803 // regulation of tumor necrosis factor-mediated signaling pathway // inferred from sequence or structural similarity /// 0010976 // positive regulation of neuron projection development // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014075 // response to amine stimulus // inferred from expression pattern /// 0019371 // cyclooxygenase pathway // inferred from direct assay /// 0019722 // calcium-mediated signaling // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // not recorded /// 0030307 // positive regulation of cell growth // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // not recorded /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030335 // positive regulation of cell migration // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0031398 // positive regulation of protein ubiquitination // inferred from sequence or structural similarity /// 0032026 // response to magnesium ion // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0032651 // regulation of interleukin-1 beta production // not recorded /// 0033198 // response to ATP // inferred from expression pattern /// 0042346 // positive regulation of NF-kappaB import into nucleus // not recorded /// 0042346 // positive regulation of NF-kappaB import into nucleus // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0045931 // positive regulation of mitotic cell cycle // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // not recorded /// 0045987 // positive regulation of smooth muscle contraction // inferred from electronic annotation /// 0045987 // positive regulation of smooth muscle contraction // not recorded /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0070301 // cellular response to hydrogen peroxide // inferred from expression pattern /// 0070555 // response to interleukin-1 // inferred from expression pattern 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0004143 // diacylglycerol kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008481 // sphinganine kinase activity // inferred from electronic annotation /// 0008481 // sphinganine kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017050 // D-erythro-sphingosine kinase activity // inferred from direct assay /// 0017050 // D-erythro-sphingosine kinase activity // not recorded /// 0017050 // D-erythro-sphingosine kinase activity // inferred from sequence or structural similarity 1368255_at NM_017354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017354.1 /DB_XREF=gi:8394195 /GEN=RNU16845 /FEA=FLmRNA /CNT=8 /TID=Rn.10075.1 /TIER=FL+Stack /STK=7 /UG=Rn.10075 /LL=50864 /DEF=Rattus norvegicus neurotrimin (RNU16845), mRNA. /PROD=neurotrimin /FL=gb:NM_017354.1 gb:U16845.1 NM_017354 neurotrimin Ntm 50864 NM_017354 0007155 // cell adhesion // inferred from electronic annotation /// 0010977 // negative regulation of neuron projection development // inferred from direct assay /// 0021549 // cerebellum development // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0060076 // excitatory synapse // inferred from direct assay 0070492 // oligosaccharide binding // inferred from direct assay 1368256_at NM_053779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053779.1 /DB_XREF=gi:16758617 /GEN=Serpini1 /FEA=FLmRNA /CNT=12 /TID=Rn.24382.1 /TIER=FL+Stack /STK=7 /UG=Rn.24382 /LL=116459 /DEF=Rattus norvegicus serine (or cysteine) proteinase inhibitor, clade I (neuroserpin), member 1 (Serpini1), mRNA. /PROD=serine (or cysteine) proteinase inhibitor, cladeI (neuroserpin), member 1 /FL=gb:AF193015.1 gb:AF193014.1 gb:NM_053779.1 NM_053779 serine (or cysteine) peptidase inhibitor, clade I, member 1 Serpini1 116459 NM_053779 0030155 // regulation of cell adhesion // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from direct assay /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1368257_at NM_019126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019126.1 /DB_XREF=gi:9506480 /GEN=Cgm3 /FEA=FLmRNA /CNT=11 /TID=Rn.25723.1 /TIER=FL+Stack /STK=7 /UG=Rn.25723 /LL=24256 /DEF=Rattus norvegicus Carcinoembryonic antigen gene family (CGM3) (Cgm3), mRNA. /PROD=carcinoembryonic antigen gene family (CGM3) /FL=gb:NM_019126.1 gb:U09815.1 NM_019126 pregnancy specific glycoprotein 19 Psg19 24256 NM_019126 0001824 // blastocyst development // inferred from electronic annotation /// 0001829 // trophectodermal cell differentiation // inferred from electronic annotation /// 0003218 // cardiac left ventricle formation // inferred from electronic annotation /// 0003219 // cardiac right ventricle formation // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from expression pattern /// 0007565 // female pregnancy // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0060411 // cardiac septum morphogenesis // inferred from electronic annotation /// 0060707 // trophoblast giant cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // traceable author statement /// 0043425 // bHLH transcription factor binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // traceable author statement 1368258_at NM_031612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031612.1 /DB_XREF=gi:13928835 /GEN=Apel /FEA=FLmRNA /CNT=11 /TID=Rn.22847.1 /TIER=FL+Stack /STK=7 /UG=Rn.22847 /LL=58812 /DEF=Rattus norvegicus apelin (Apel), mRNA. /PROD=apelin /FL=gb:AB023495.1 gb:AF179679.1 gb:NM_031612.1 NM_031612 apelin Apln 58812 NM_031612 0002026 // regulation of the force of heart contraction // inferred from mutant phenotype /// 0007631 // feeding behavior // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0031652 // positive regulation of heat generation // inferred from mutant phenotype /// 0042327 // positive regulation of phosphorylation // inferred from mutant phenotype /// 0042756 // drinking behavior // inferred from mutant phenotype /// 0043576 // regulation of respiratory gaseous exchange // inferred from mutant phenotype /// 0045776 // negative regulation of blood pressure // inferred from direct assay /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0045906 // negative regulation of vasoconstriction // inferred from mutant phenotype /// 0045909 // positive regulation of vasodilation // inferred from mutant phenotype /// 0050878 // regulation of body fluid levels // inferred from mutant phenotype /// 0051461 // positive regulation of adrenocorticotropin secretion // inferred from mutant phenotype /// 0051466 // positive regulation of corticotropin-releasing hormone secretion // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0001664 // G-protein-coupled receptor binding // traceable author statement /// 0005179 // hormone activity // inferred from electronic annotation /// 0031704 // apelin receptor binding // inferred from direct assay /// 0031704 // apelin receptor binding // traceable author statement 1368259_at NM_017043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017043.1 /DB_XREF=gi:8394093 /GEN=Ptgs1 /FEA=FLmRNA /CNT=9 /TID=Rn.44404.1 /TIER=FL+Stack /STK=7 /UG=Rn.44404 /LL=24693 /DEF=Rattus norvegicus prostaglandin-endoperoxide synthase 1 (prostaglandin GH synthase and cyclooxygenase) (Ptgs1), mRNA. /PROD=prostaglandin-endoperoxide synthase 1(prostaglandin GH synthase and cyclooxygenase) /FL=gb:U03388.1 gb:NM_017043.1 gb:S67721.1 gb:U18060.1 NM_017043 prostaglandin-endoperoxide synthase 1 Ptgs1 24693 NM_017043 0001516 // prostaglandin biosynthetic process // inferred from mutant phenotype /// 0001516 // prostaglandin biosynthetic process // not recorded /// 0001516 // prostaglandin biosynthetic process // inferred from sequence or structural similarity /// 0001516 // prostaglandin biosynthetic process // traceable author statement /// 0001516 // prostaglandin biosynthetic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006693 // prostaglandin metabolic process // not recorded /// 0006693 // prostaglandin metabolic process // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0008217 // regulation of blood pressure // not recorded /// 0008217 // regulation of blood pressure // inferred from sequence or structural similarity /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010700 // negative regulation of norepinephrine secretion // inferred from mutant phenotype /// 0019371 // cyclooxygenase pathway // inferred from electronic annotation /// 0019371 // cyclooxygenase pathway // not recorded /// 0032811 // negative regulation of epinephrine secretion // inferred from mutant phenotype /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype /// 0045987 // positive regulation of smooth muscle contraction // inferred from mutant phenotype /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005635 // nuclear envelope // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from sequence or structural similarity /// 0005792 // microsome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004601 // peroxidase activity // inferred from electronic annotation /// 0004666 // prostaglandin-endoperoxide synthase activity // not recorded /// 0004666 // prostaglandin-endoperoxide synthase activity // traceable author statement /// 0004666 // prostaglandin-endoperoxide synthase activity // inferred from electronic annotation /// 0008289 // lipid binding // inferred from mutant phenotype /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368260_at NM_053749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053749.1 /DB_XREF=gi:16758579 /GEN=Stk12 /FEA=FLmRNA /CNT=9 /TID=Rn.10865.1 /TIER=FL+Stack /STK=7 /UG=Rn.10865 /LL=114592 /DEF=Rattus norvegicus serinethreonine kinase 12 (Stk12), mRNA. /PROD=serinethreonine kinase 12 /FL=gb:NM_053749.1 gb:D89731.1 NM_053749 aurora kinase B Aurkb 114592 NM_053749 0000910 // cytokinesis // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007049 // cell cycle // not recorded /// 0007067 // mitosis // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0008283 // cell proliferation // inferred from expression pattern /// 0034501 // protein localization to kinetochore // inferred from electronic annotation /// 0034501 // protein localization to kinetochore // not recorded /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000779 // condensed chromosome, centromeric region // not recorded /// 0000779 // condensed chromosome, centromeric region // inferred from electronic annotation /// 0000780 // condensed nuclear chromosome, centromeric region // inferred from electronic annotation /// 0000780 // condensed nuclear chromosome, centromeric region // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay /// 0032133 // chromosome passenger complex // inferred from electronic annotation /// 0032133 // chromosome passenger complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from mutant phenotype /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368261_at NM_053817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053817.1 /DB_XREF=gi:16758661 /GEN=Nrxn3 /FEA=FLmRNA /CNT=8 /TID=Rn.10926.1 /TIER=FL+Stack /STK=7 /UG=Rn.10926 /LL=116508 /DEF=Rattus norvegicus neurexin 3 (Nrxn3), mRNA. /PROD=neurexin 3 /FL=gb:L14851.1 gb:NM_053817.1 NM_053817 neurexin 3 Nrxn3 116508 NM_053817 0007155 // cell adhesion // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0007416 // synapse assembly // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005246 // calcium channel regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368262_at NM_021657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021657.1 /DB_XREF=gi:11067372 /GEN=Scop /FEA=FLmRNA /CNT=8 /TID=Rn.41075.1 /TIER=FL+Stack /STK=7 /UG=Rn.41075 /LL=59265 /DEF=Rattus norvegicus Circadian Oscillatory Protein (SCOP) (Scop), mRNA. /PROD=Circadian Oscillatory Protein (SCOP) /FL=gb:AB023624.1 gb:NM_021657.1 NM_021657 PH domain and leucine rich repeat protein phosphatase 1 Phlpp1 59265 NM_021657 0006915 // apoptosis // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368263_a_at X90402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X90402.1 /DB_XREF=gi:1177331 /GEN=MOBP-69 /FEA=mRNA /CNT=1 /TID=Rn.7619.7 /TIER=ConsEnd /STK=0 /UG=Rn.7619 /LL=25037 /DEF=R.norvegicus mRNA for Myelin-associatedOligodendrocytic Basic Protein-69. /PROD=Myelin-associatedOligodendrocytic BasicProtein X90402 myelin-associated oligodendrocyte basic protein Mobp 25037 NM_012720 0007399 // nervous system development // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0019911 // structural constituent of myelin sheath // inferred from direct assay /// 0019911 // structural constituent of myelin sheath // not recorded /// 0019911 // structural constituent of myelin sheath // inferred from electronic annotation 1368264_at NM_057125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057125.1 /DB_XREF=gi:16923975 /GEN=Pex6 /FEA=FLmRNA /CNT=8 /TID=Rn.10675.1 /TIER=FL+Stack /STK=7 /UG=Rn.10675 /LL=117265 /DEF=Rattus norvegicus peroxisomal biogenesis factor 6 (Pex6), mRNA. /PROD=peroxisomal biogenesis factor 6 /FL=gb:D63673.1 gb:NM_057125.1 NM_057125 peroxisomal biogenesis factor 6 Pex6 117265 NM_057125 0006625 // protein targeting to peroxisome // not recorded /// 0007031 // peroxisome organization // inferred from mutant phenotype /// 0007031 // peroxisome organization // not recorded /// 0007031 // peroxisome organization // inferred from electronic annotation /// 0016561 // protein import into peroxisome matrix, translocation // not recorded /// 0050821 // protein stabilization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005777 // peroxisome // inferred from electronic annotation /// 0005777 // peroxisome // not recorded /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0016887 // ATPase activity // not recorded /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0032403 // protein complex binding // not recorded /// 0042623 // ATPase activity, coupled // not recorded 1368265_at NM_134369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134369.1 /DB_XREF=gi:19705466 /GEN=Cyp2t1 /FEA=FLmRNA /CNT=8 /TID=Rn.43384.1 /TIER=FL+Stack /STK=7 /UG=Rn.43384 /LL=171380 /DEF=Rattus norvegicus cytochrome P450 monooxygenase CYP2T1 (Cyp2t1), mRNA. /PROD=cytochrome P450 monooxygenase CYP2T1 /FL=gb:NM_134369.1 gb:AF368269.1 NM_134369 cytochrome P450, family 2, subfamily t, polypeptide 1 Cyp2t1 171380 NM_134369 0055114 // oxidation reduction // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0019825 // oxygen binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368266_at NM_017134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017134.1 /DB_XREF=gi:8392919 /GEN=Arg1 /FEA=FLmRNA /CNT=8 /TID=Rn.9857.1 /TIER=FL+Stack /STK=7 /UG=Rn.9857 /LL=29221 /DEF=Rattus norvegicus arginase 1, liver (Arg1), mRNA. /PROD=arginase 1, liver /FL=gb:J02720.1 gb:NM_017134.1 NM_017134 arginase, liver Arg1 29221 NM_017134 0000050 // urea cycle // inferred from direct assay /// 0000050 // urea cycle // inferred from electronic annotation /// 0001889 // liver development // inferred from expression pattern /// 0001938 // positive regulation of endothelial cell proliferation // inferred from direct assay /// 0006525 // arginine metabolic process // inferred from direct assay /// 0006525 // arginine metabolic process // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0009611 // response to wounding // inferred from expression pattern /// 0009635 // response to herbicide // inferred from expression pattern /// 0010042 // response to manganese ion // inferred from expression pattern /// 0010043 // response to zinc ion // inferred from expression pattern /// 0010269 // response to selenium ion // inferred from expression pattern /// 0010963 // regulation of L-arginine import // inferred from direct assay /// 0014075 // response to amine stimulus // inferred from expression pattern /// 0019547 // arginine catabolic process to ornithine // inferred from direct assay /// 0030324 // lung development // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032964 // collagen biosynthetic process // inferred from mutant phenotype /// 0033189 // response to vitamin A // inferred from expression pattern /// 0033197 // response to vitamin E // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0048678 // response to axon injury // inferred from expression pattern /// 0051597 // response to methylmercury // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0060056 // mammary gland involution // inferred from expression pattern /// 0060135 // maternal process involved in female pregnancy // inferred from expression pattern /// 0070207 // protein homotrimerization // inferred from direct assay /// 0070301 // cellular response to hydrogen peroxide // inferred from expression pattern /// 0071222 // cellular response to lipopolysaccharide // inferred from expression pattern /// 0071353 // cellular response to interleukin-4 // inferred from expression pattern /// 0071377 // cellular response to glucagon stimulus // inferred from expression pattern /// 0071549 // cellular response to dexamethasone stimulus // inferred from expression pattern /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0004053 // arginase activity // inferred from direct assay /// 0004053 // arginase activity // not recorded /// 0004053 // arginase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016813 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1368267_at NM_053406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053406.1 /DB_XREF=gi:16758137 /GEN=Pomt1 /FEA=FLmRNA /CNT=7 /TID=Rn.20148.1 /TIER=FL+Stack /STK=7 /UG=Rn.20148 /LL=84430 /DEF=Rattus norvegicus protein O-mannosyltransferase 1 (Pomt1), mRNA. /PROD=protein O-mannosyltransferase 1 /FL=gb:NM_053406.1 gb:AF192388.1 NM_053406 protein-O-mannosyltransferase 1 Pomt1 84430 NM_053406 0006493 // protein O-linked glycosylation // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0001669 // acrosomal vesicle // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // not recorded 0000030 // mannosyltransferase activity // inferred from electronic annotation /// 0004169 // dolichyl-phosphate-mannose-protein mannosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368268_at NM_053729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053729.1 /DB_XREF=gi:16758543 /GEN=Tdg /FEA=FLmRNA /CNT=7 /TID=Rn.12304.1 /TIER=FL+Stack /STK=7 /UG=Rn.12304 /LL=114521 /DEF=Rattus norvegicus thymine-DNA glycosylase (Tdg), mRNA. /PROD=thymine-DNA glycosylase /FL=gb:NM_053729.1 gb:AY026945.1 NM_053729 thymine-DNA glycosylase Tdg 114521 NM_053729 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006281 // DNA repair // inferred from electronic annotation /// 0006298 // mismatch repair // inferred from electronic annotation /// 0045008 // depyrimidination // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0016605 // PML body // not recorded 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // inferred from direct assay /// 0016564 // transcription repressor activity // inferred from direct assay /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0016799 // hydrolase activity, hydrolyzing N-glycosyl compounds // inferred from electronic annotation /// 0019104 // DNA N-glycosylase activity // not recorded /// 0019904 // protein domain specific binding // inferred from direct assay /// 0030983 // mismatched DNA binding // inferred from electronic annotation /// 0032183 // SUMO binding // not recorded 1368269_at NM_012975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012975.1 /DB_XREF=gi:6981151 /GEN=Lgals4 /FEA=FLmRNA /CNT=7 /TID=Rn.9656.1 /TIER=FL+Stack /STK=7 /UG=Rn.9656 /LL=25474 /DEF=Rattus norvegicus Lectin, galactose binding, soluble 4 (Galectin-4) (Lgals4), mRNA. /PROD=lectin, galactose binding, soluble 4(Galectin-4) /FL=gb:NM_012975.1 gb:M73553.1 NM_012975 lectin, galactoside-binding, soluble, 4 Lgals4 25474 NM_012975 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from electronic annotation 1368270_at NM_012907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012907.1 /DB_XREF=gi:6978518 /GEN=Apobec1 /FEA=FLmRNA /CNT=7 /TID=Rn.10002.1 /TIER=FL+Stack /STK=7 /UG=Rn.10002 /LL=25383 /DEF=Rattus norvegicus Apolipoprotein B editing protein (Apobec1), mRNA. /PROD=apolipoprotein B editing protein /FL=gb:L07114.1 gb:NM_012907.1 NM_012907 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 Apobec1 25383 NM_012907 0006397 // mRNA processing // inferred from electronic annotation /// 0006970 // response to osmotic stress // inferred from direct assay /// 0010043 // response to zinc ion // inferred from expression pattern /// 0010332 // response to gamma radiation // inferred from electronic annotation /// 0010332 // response to gamma radiation // not recorded /// 0016554 // cytidine to uridine editing // inferred from direct assay /// 0016554 // cytidine to uridine editing // not recorded /// 0016554 // cytidine to uridine editing // inferred from electronic annotation /// 0016556 // mRNA modification // inferred from direct assay /// 0016556 // mRNA modification // not recorded /// 0016556 // mRNA modification // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042157 // lipoprotein metabolic process // not recorded /// 0042157 // lipoprotein metabolic process // inferred from electronic annotation /// 0042158 // lipoprotein biosynthetic process // inferred from electronic annotation /// 0042158 // lipoprotein biosynthetic process // not recorded /// 0042493 // response to drug // inferred from direct assay /// 0042953 // lipoprotein transport // inferred from electronic annotation /// 0042953 // lipoprotein transport // not recorded /// 0045471 // response to ethanol // inferred from direct assay /// 0046087 // cytidine metabolic process // inferred by curator /// 0048255 // mRNA stabilization // inferred from electronic annotation /// 0048255 // mRNA stabilization // not recorded /// 0051592 // response to calcium ion // inferred from direct assay /// 0051607 // defense response to virus // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005737 // cytoplasm // inferred from direct assay 0003723 // RNA binding // non-traceable author statement /// 0004126 // cytidine deaminase activity // inferred from direct assay /// 0004126 // cytidine deaminase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016814 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines // inferred from electronic annotation /// 0017091 // AU-rich element binding // inferred from electronic annotation /// 0017091 // AU-rich element binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1368271_a_at NM_053365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053365.1 /DB_XREF=gi:16758093 /GEN=LOC84378 /FEA=FLmRNA /CNT=38 /TID=Rn.4258.1 /TIER=FL+Stack /STK=6 /UG=Rn.4258 /LL=84378 /DEF=Rattus norvegicus adipocyte lipid-binding protein (LOC84378), mRNA. /PROD=adipocyte lipid-binding protein /FL=gb:AF144756.1 gb:NM_053365.1 gb:U75581.1 NM_053365 fatty acid binding protein 4, adipocyte Fabp4 79451 NM_053365 0001816 // cytokine production // inferred from electronic annotation /// 0001816 // cytokine production // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006631 // fatty acid metabolic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0050729 // positive regulation of inflammatory response // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // not recorded /// 0050872 // white fat cell differentiation // inferred from electronic annotation /// 0050872 // white fat cell differentiation // not recorded /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0071285 // cellular response to lithium ion // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005504 // fatty acid binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded 1368272_at D00252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D00252.1 /DB_XREF=gi:220683 /FEA=FLmRNA /CNT=35 /TID=Rn.5819.1 /TIER=FL+Stack /STK=6 /UG=Rn.5819 /LL=24401 /UG_GENE=Got1 /DEF=Rattus norvegicus mRNA for cytosolic aspartate aminotransferase, complete cds. /PROD=cytosolic aspartate aminotransferase /FL=gb:NM_012571.1 gb:D00252.1 gb:J04171.1 D00252 glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1) Got1 24401 NM_012571 0006103 // 2-oxoglutarate metabolic process // inferred from sequence or structural similarity /// 0006107 // oxaloacetate metabolic process // inferred from electronic annotation /// 0006107 // oxaloacetate metabolic process // not recorded /// 0006114 // glycerol biosynthetic process // inferred from electronic annotation /// 0006114 // glycerol biosynthetic process // not recorded /// 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006531 // aspartate metabolic process // inferred from direct assay /// 0006531 // aspartate metabolic process // inferred from sequence or structural similarity /// 0006532 // aspartate biosynthetic process // inferred from electronic annotation /// 0006532 // aspartate biosynthetic process // not recorded /// 0006533 // aspartate catabolic process // inferred from electronic annotation /// 0006533 // aspartate catabolic process // not recorded /// 0006536 // glutamate metabolic process // inferred from sequence or structural similarity /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0019550 // glutamate catabolic process to aspartate // inferred from electronic annotation /// 0019550 // glutamate catabolic process to aspartate // not recorded /// 0019551 // glutamate catabolic process to 2-oxoglutarate // inferred from electronic annotation /// 0019551 // glutamate catabolic process to 2-oxoglutarate // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // not recorded /// 0043648 // dicarboxylic acid metabolic process // inferred from direct assay /// 0043648 // dicarboxylic acid metabolic process // inferred from mutant phenotype /// 0051384 // response to glucocorticoid stimulus // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // not recorded /// 0055089 // fatty acid homeostasis // inferred from electronic annotation /// 0055089 // fatty acid homeostasis // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // traceable author statement /// 0005829 // cytosol // inferred from electronic annotation /// 0043679 // axon terminus // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004069 // L-aspartate:2-oxoglutarate aminotransferase activity // inferred from direct assay /// 0004069 // L-aspartate:2-oxoglutarate aminotransferase activity // inferred from mutant phenotype /// 0004069 // L-aspartate:2-oxoglutarate aminotransferase activity // not recorded /// 0004069 // L-aspartate:2-oxoglutarate aminotransferase activity // inferred from sequence or structural similarity /// 0004069 // L-aspartate:2-oxoglutarate aminotransferase activity // inferred from electronic annotation /// 0004609 // phosphatidylserine decarboxylase activity // inferred from electronic annotation /// 0004609 // phosphatidylserine decarboxylase activity // not recorded /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0031406 // carboxylic acid binding // inferred from direct assay 1368273_at NM_031622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031622.1 /DB_XREF=gi:13928855 /GEN=Mapk6 /FEA=FLmRNA /CNT=21 /TID=Rn.2566.1 /TIER=FL+Stack /STK=6 /UG=Rn.2566 /LL=58840 /DEF=Rattus norvegicus mitogen-activated protein kinase 6 (Mapk6), mRNA. /PROD=mitogen-activated protein kinase 6 /FL=gb:NM_031622.1 gb:M64301.1 NM_031622 mitogen-activated protein kinase 6 Mapk6 58840 NM_031622 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004707 // MAP kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368274_at NM_031352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031352.1 /DB_XREF=gi:13786197 /GEN=Dbnl /FEA=FLmRNA /CNT=31 /TID=Rn.4115.1 /TIER=FL+Stack /STK=6 /UG=Rn.4115 /LL=83527 /DEF=Rattus norvegicus drebrin-like (Dbnl), mRNA. /PROD=drebrin-like /FL=gb:NM_031352.1 gb:AB009346.1 gb:AB039819.1 gb:AB039818.1 NM_031352 drebrin-like Dbnl 83527 NM_031352 0006897 // endocytosis // inferred from electronic annotation /// 0016601 // Rac protein signal transduction // not recorded /// 0016601 // Rac protein signal transduction // inferred from sequence or structural similarity /// 0016601 // Rac protein signal transduction // inferred from electronic annotation /// 0051014 // actin filament severing // not recorded /// 0051016 // barbed-end actin filament capping // not recorded /// 0051017 // actin filament bundle assembly // not recorded 0001726 // ruffle // inferred from electronic annotation /// 0001726 // ruffle // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0005938 // cell cortex // inferred from sequence or structural similarity /// 0005938 // cell cortex // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0030027 // lamellipodium // not recorded /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation 0003779 // actin binding // not recorded /// 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // traceable author statement /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0051015 // actin filament binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1368275_at NM_080886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080886.1 /DB_XREF=gi:18266683 /GEN=Sc4mol /FEA=FLmRNA /CNT=22 /TID=Rn.7167.1 /TIER=FL+Stack /STK=6 /UG=Rn.7167 /LL=140910 /DEF=Rattus norvegicus sterol-C4-methyl oxidase-like (Sc4mol), mRNA. /PROD=sterol-C4-methyl oxidase-like /FL=gb:NM_080886.1 gb:D50559.1 NM_080886 sterol-C4-methyl oxidase-like Sc4mol 140910 NM_080886 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000254 // C-4 methylsterol oxidase activity // inferred from electronic annotation /// 0000254 // C-4 methylsterol oxidase activity // not recorded /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1368276_at NM_012664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012664.1 /DB_XREF=gi:6981621 /GEN=Syp /FEA=FLmRNA /CNT=27 /TID=Rn.11067.1 /TIER=FL+Stack /STK=6 /UG=Rn.11067 /LL=24804 /DEF=Rattus norvegicus Synaptophysin (Syp), mRNA. /PROD=synaptophysin /FL=gb:NM_012664.1 NM_012664 synaptophysin Syp 24804 NM_012664 0006810 // transport // inferred from electronic annotation /// 0048168 // regulation of neuronal synaptic plasticity // non-traceable author statement /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // not recorded /// 0048172 // regulation of short-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048172 // regulation of short-term neuronal synaptic plasticity // not recorded 0008021 // synaptic vesicle // inferred from direct assay /// 0008021 // synaptic vesicle // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0019717 // synaptosome // not recorded /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030285 // integral to synaptic vesicle membrane // traceable author statement /// 0030672 // synaptic vesicle membrane // not recorded /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0042734 // presynaptic membrane // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0015485 // cholesterol binding // inferred from electronic annotation /// 0015485 // cholesterol binding // not recorded /// 0017075 // syntaxin-1 binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from physical interaction /// 0042169 // SH2 domain binding // inferred from electronic annotation /// 0042169 // SH2 domain binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1368277_at NM_017041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017041.1 /DB_XREF=gi:8394029 /GEN=Ppp3ca /FEA=FLmRNA /CNT=20 /TID=Rn.6866.1 /TIER=FL+Stack /STK=6 /UG=Rn.6866 /LL=24674 /DEF=Rattus norvegicus Calcineurin subunit A alpha (Ppp3ca), mRNA. /PROD=calcineurin subunit A alpha /FL=gb:M29275.1 gb:NM_017041.1 gb:D90035.1 NM_017041 protein phosphatase 3, catalytic subunit, alpha isoform Ppp3ca 24674 NM_017041 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0001975 // response to amphetamine // inferred from expression pattern /// 0006470 // protein dephosphorylation // inferred from direct assay /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006606 // protein import into nucleus // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0006950 // response to stress // not recorded /// 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0045955 // negative regulation of calcium ion-dependent exocytosis // inferred by curator /// 0046676 // negative regulation of insulin secretion // inferred from mutant phenotype /// 0048741 // skeletal muscle fiber development // inferred from electronic annotation /// 0048741 // skeletal muscle fiber development // not recorded /// 0050804 // regulation of synaptic transmission // inferred from electronic annotation /// 0050804 // regulation of synaptic transmission // not recorded /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded /// 0071333 // cellular response to glucose stimulus // inferred from mutant phenotype 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005955 // calcineurin complex // inferred from direct assay /// 0005955 // calcineurin complex // not recorded /// 0005955 // calcineurin complex // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030018 // Z disc // inferred from electronic annotation /// 0030018 // Z disc // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // not recorded /// 0004722 // protein serine/threonine phosphatase activity // inferred from direct assay /// 0004723 // calcium-dependent protein serine/threonine phosphatase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from direct assay /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay 1368278_at NM_133599 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133599.1 /DB_XREF=gi:19424307 /GEN=Lgals2 /FEA=FLmRNA /CNT=13 /TID=Rn.2982.1 /TIER=FL+Stack /STK=6 /UG=Rn.2982 /LL=171134 /DEF=Rattus norvegicus lectin, galactoside-binding, soluble, 2 (galectin 2) (Lgals2), mRNA. /PROD=lectin, galactoside-binding, soluble, 2(galectin 2) /FL=gb:NM_133599.1 gb:AB001075.1 NM_133599 lectin, galactoside-binding, soluble, 2 Lgals2 171134 NM_133599 0005529 // sugar binding // inferred from electronic annotation /// 0016936 // galactoside binding // inferred from direct assay 1368279_at NM_053718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053718.1 /DB_XREF=gi:16758531 /GEN=Mllt3 /FEA=FLmRNA /CNT=14 /TID=Rn.22828.1 /TIER=FL+Stack /STK=6 /UG=Rn.22828 /LL=114510 /DEF=Rattus norvegicus myeloidlymphoid or mixed-lineage leukemia (trithorax (Drosophila) homolog); translocated to, 3 (Mllt3), mRNA. /PROD=myeloidlymphoid or mixed-lineage leukemia(trithorax (Drosophila) homolog); translocated to, 3 /FL=gb:NM_053718.1 NM_053718 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 Mllt3 114510 NM_053718 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007379 // segment specification // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368280_at NM_017097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017097.1 /DB_XREF=gi:8393217 /GEN=Ctsc /FEA=FLmRNA /CNT=13 /TID=Rn.11559.1 /TIER=FL+Stack /STK=6 /UG=Rn.11559 /LL=25423 /DEF=Rattus norvegicus Cathepsin C (dipeptidyl peptidase I) (Ctsc), mRNA. /PROD=cathepsin C (dipeptidyl peptidase I) /FL=gb:NM_017097.1 NM_017097 cathepsin C Ctsc 25423 NM_017097 0006508 // proteolysis // inferred from expression pattern /// 0006508 // proteolysis // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0010033 // response to organic substance // inferred from direct assay 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // traceable author statement /// 0005764 // lysosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay 0004197 // cysteine-type endopeptidase activity // non-traceable author statement /// 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0031404 // chloride ion binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from direct assay /// 0043621 // protein self-association // inferred from direct assay 1368281_at L07316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L07316.1 /DB_XREF=gi:459934 /GEN=dpep1 /FEA=FLmRNA /CNT=14 /TID=Rn.6051.1 /TIER=FL+Stack /STK=6 /UG=Rn.6051 /LL=94199 /DEF=Rat dipeptidase (dpep1) mRNA, complete cds. /PROD=dipeptidase /FL=gb:L07316.1 gb:M94056.1 gb:L07315.1 gb:NM_053591.1 L07316 dipeptidase 1 (renal) Dpep1 94199 NM_053591 0006508 // proteolysis // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0031528 // microvillus membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008235 // metalloexopeptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008239 // dipeptidyl-peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016805 // dipeptidase activity // traceable author statement /// 0016805 // dipeptidase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368282_at NM_053591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053591.1 /DB_XREF=gi:16758371 /GEN=Dpep1 /FEA=FLmRNA /CNT=14 /TID=Rn.6051.1 /TIER=FL /STK=4 /UG=Rn.6051 /LL=94199 /DEF=Rattus norvegicus dipeptidase 1 (Dpep1), mRNA. /PROD=dipeptidase 1 /FL=gb:L07316.1 gb:M94056.1 gb:L07315.1 gb:NM_053591.1 NM_053591 dipeptidase 1 (renal) Dpep1 94199 NM_053591 0006508 // proteolysis // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0031528 // microvillus membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008235 // metalloexopeptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008239 // dipeptidyl-peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016805 // dipeptidase activity // traceable author statement /// 0016805 // dipeptidase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368283_at NM_133606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133606.1 /DB_XREF=gi:19424317 /GEN=Ehhadh /FEA=FLmRNA /CNT=12 /TID=Rn.3671.1 /TIER=FL+Stack /STK=6 /UG=Rn.3671 /LL=171142 /DEF=Rattus norvegicus enoyl-Coenzyme A, hydratase3-hydroxyacyl Coenzyme A dehydrogenase (Ehhadh), mRNA. /PROD=enoyl-Coenzyme A, hydratase3-hydroxyacylCoenzyme A dehydrogenase /FL=gb:K03249.1 gb:NM_133606.1 NM_133606 enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase Ehhadh 171142 NM_133606 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // inferred from direct assay /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0004165 // dodecenoyl-CoA delta-isomerase activity // inferred from electronic annotation /// 0004300 // enoyl-CoA hydratase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation 1368284_at NM_020086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020086.1 /DB_XREF=gi:9910519 /GEN=Pv1 /FEA=FLmRNA /CNT=11 /TID=Rn.53915.1 /TIER=FL+Stack /STK=6 /UG=Rn.53915 /LL=56765 /DEF=Rattus norvegicus PV-1 (Pv1), mRNA. /PROD=PV-1 /FL=gb:NM_020086.1 gb:AF154831.1 NM_020086 plasmalemma vesicle associated protein Plvap 56765 NM_020086 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0005901 // caveola // non-traceable author statement /// 0005901 // caveola // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0042803 // protein homodimerization activity // inferred from direct assay 1368285_at NM_012650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012650.1 /DB_XREF=gi:6981531 /GEN=Shbg /FEA=FLmRNA /CNT=11 /TID=Rn.37473.1 /TIER=FL+Stack /STK=6 /UG=Rn.37473 /LL=24775 /DEF=Rattus norvegicus Sex hormone binding globulin or androgen-binding protein (Shbg), mRNA. /PROD=sex hormone binding globulin or androgen-bindingprotein (other gene product from ABP gene) /FL=gb:NM_012650.1 NM_012650 sex hormone binding globulin Shbg 24775 NM_012650 0007285 // primary spermatocyte growth // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement 0005496 // steroid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation 1368286_at NM_053494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053494.1 /DB_XREF=gi:16758987 /GEN=Slc2a8 /FEA=FLmRNA /CNT=17 /TID=Rn.12923.1 /TIER=FL+Stack /STK=6 /UG=Rn.12923 /LL=85256 /DEF=Rattus norvegicus solute carrier family 2, (facilitated glucose transporter) member 8 (Slc2a8), mRNA. /PROD=solute carrier family 2, (facilitated glucosetransporter) member 8 /FL=gb:AB033418.1 gb:NM_053494.1 NM_053494 solute carrier family 2, (facilitated glucose transporter) member 8 Slc2a8 85256 NM_053494 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0006006 // glucose metabolic process // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // not recorded /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0015758 // glucose transport // not recorded /// 0015758 // glucose transport // inferred from electronic annotation /// 0035428 // hexose transmembrane transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005215 // transporter activity // inferred from electronic annotation /// 0005355 // glucose transmembrane transporter activity // inferred from expression pattern /// 0005355 // glucose transmembrane transporter activity // not recorded /// 0005355 // glucose transmembrane transporter activity // inferred from electronic annotation /// 0005536 // glucose binding // inferred from electronic annotation /// 0005536 // glucose binding // not recorded /// 0022891 // substrate-specific transmembrane transporter activity // inferred from electronic annotation 1368287_at NM_032083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032083.1 /DB_XREF=gi:14091776 /GEN=Chn1 /FEA=FLmRNA /CNT=16 /TID=Rn.11166.1 /TIER=FL+Stack /STK=6 /UG=Rn.11166 /LL=84030 /DEF=Rattus norvegicus chimerin (chimaerin) 1 (Chn1), mRNA. /PROD=chimerin (chimaerin) 1 /FL=gb:NM_032083.1 NM_032083 chimerin (chimaerin) 1 Chn1 84030 NM_032083 0007165 // signal transduction // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0001565 // phorbol ester receptor activity // traceable author statement /// 0005096 // GTPase activator activity // traceable author statement /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368288_at NM_012564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012564.1 /DB_XREF=gi:6978878 /GEN=Gc /FEA=FLmRNA /CNT=15 /TID=Rn.1437.1 /TIER=FL+Stack /STK=6 /UG=Rn.1437 /LL=24384 /DEF=Rattus norvegicus Group-specific component (vitamin D-binding protein) (Gc), mRNA. /PROD=group-specific component (vitamin D-bindingprotein) /FL=gb:M12450.1 gb:J05148.1 gb:NM_012564.1 NM_012564 group specific component Gc 24384 NM_012564 0006810 // transport // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from expression pattern /// 0007595 // lactation // inferred from expression pattern /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0042359 // vitamin D metabolic process // inferred from electronic annotation /// 0042359 // vitamin D metabolic process // not recorded /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003779 // actin binding // not recorded /// 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // inferred from electronic annotation /// 0005499 // vitamin D binding // inferred from direct assay /// 0005499 // vitamin D binding // traceable author statement /// 0005499 // vitamin D binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0051183 // vitamin transporter activity // inferred from electronic annotation 1368289_at AA944965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944965 /DB_XREF=gi:3104881 /DB_XREF=EST200464 /CLONE=RLIAE07 /FEA=FLmRNA /CNT=15 /TID=Rn.1437.1 /TIER=ConsEnd /STK=2 /UG=Rn.1437 /LL=24384 /UG_GENE=Gc /UG_TITLE=Group-specific component (vitamin D-binding protein) /FL=gb:M12450.1 gb:J05148.1 gb:NM_012564.1 AA944965 group specific component Gc 24384 NM_012564 0006810 // transport // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from expression pattern /// 0007595 // lactation // inferred from expression pattern /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0042359 // vitamin D metabolic process // inferred from electronic annotation /// 0042359 // vitamin D metabolic process // not recorded /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003779 // actin binding // not recorded /// 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // inferred from electronic annotation /// 0005499 // vitamin D binding // inferred from direct assay /// 0005499 // vitamin D binding // traceable author statement /// 0005499 // vitamin D binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0051183 // vitamin transporter activity // inferred from electronic annotation 1368290_at NM_031327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031327.1 /DB_XREF=gi:13786149 /GEN=Cyr61 /FEA=FLmRNA /CNT=13 /TID=Rn.22129.1 /TIER=FL+Stack /STK=6 /UG=Rn.22129 /LL=83476 /DEF=Rattus norvegicus cysteine rich protein 61 (Cyr61), mRNA. /PROD=cysteine rich protein 61 /FL=gb:AB015877.1 gb:NM_031327.1 gb:AF218568.1 NM_031327 cysteine-rich, angiogenic inducer, 61 Cyr61 83476 NM_031327 0001558 // regulation of cell growth // inferred from electronic annotation /// 0002041 // intussusceptive angiogenesis // inferred from electronic annotation /// 0002041 // intussusceptive angiogenesis // not recorded /// 0006935 // chemotaxis // inferred from direct assay /// 0006935 // chemotaxis // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from direct assay /// 0007155 // cell adhesion // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // not recorded /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030335 // positive regulation of cell migration // traceable author statement /// 0045766 // positive regulation of angiogenesis // traceable author statement /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded /// 0060710 // chorio-allantoic fusion // inferred from electronic annotation /// 0060710 // chorio-allantoic fusion // not recorded /// 0060716 // labyrinthine layer blood vessel development // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // traceable author statement 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0008201 // heparin binding // traceable author statement /// 0008201 // heparin binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation /// 0050840 // extracellular matrix binding // inferred from electronic annotation /// 0050840 // extracellular matrix binding // not recorded 1368291_at NM_021752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021752.1 /DB_XREF=gi:11120699 /GEN=Api2 /FEA=FLmRNA /CNT=11 /TID=Rn.43867.1 /TIER=FL+Stack /STK=6 /UG=Rn.43867 /LL=60371 /DEF=Rattus norvegicus apoptosis inhibitor 2 (Api2), mRNA. /PROD=apoptosis inhibitor 2 /FL=gb:AF190020.1 gb:AF183431.1 gb:NM_021752.1 NM_021752 baculoviral IAP repeat-containing 2 Birc2 60371 NM_021752 0000209 // protein polyubiquitination // not recorded /// 0001666 // response to hypoxia // inferred from direct assay /// 0001890 // placenta development // not recorded /// 0001890 // placenta development // inferred from electronic annotation /// 0006916 // anti-apoptosis // traceable author statement /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0051291 // protein heterooligomerization // inferred from physical interaction /// 0051591 // response to cAMP // inferred from expression pattern 0001741 // XY body // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation 1368292_at NM_080689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080689.1 /DB_XREF=gi:18093101 /GEN=Dnm1 /FEA=FLmRNA /CNT=11 /TID=Rn.10354.1 /TIER=FL+Stack /STK=6 /UG=Rn.10354 /LL=140694 /DEF=Rattus norvegicus dynamin 1 (Dnm1), mRNA. /PROD=dynamin 1 /FL=gb:NM_080689.1 NM_080689 dynamin 1 Dnm1 140694 NM_080689 0006897 // endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from mutant phenotype /// 0006898 // receptor-mediated endocytosis // not recorded /// 0031623 // receptor internalization // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0030117 // membrane coat // not recorded /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from physical interaction /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // traceable author statement 1368293_at NM_031766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031766.1 /DB_XREF=gi:13929065 /GEN=Cpz /FEA=FLmRNA /CNT=11 /TID=Rn.11056.1 /TIER=FL+Stack /STK=6 /UG=Rn.11056 /LL=83575 /DEF=Rattus norvegicus carboxypeptidase Z (Cpz), mRNA. /PROD=carboxypeptidase Z /FL=gb:NM_031766.1 gb:AF017638.1 gb:AF017637.1 NM_031766 carboxypeptidase Z Cpz 83575 NM_031766 0006508 // proteolysis // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368294_at NM_053907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053907.1 /DB_XREF=gi:16758783 /GEN=Dnase1l3 /FEA=FLmRNA /CNT=10 /TID=Rn.29996.1 /TIER=FL+Stack /STK=6 /UG=Rn.29996 /LL=116687 /DEF=Rattus norvegicus deoxyribonuclease I-like 3 (Dnase1l3), mRNA. /PROD=deoxyribonuclease I-like 3 /FL=gb:NM_053907.1 gb:U75689.1 gb:AF039852.1 NM_053907 deoxyribonuclease 1-like 3 Dnase1l3 116687 NM_053907 0006308 // DNA catabolic process // inferred from electronic annotation /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // not recorded /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // traceable author statement /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // not recorded /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004520 // endodeoxyribonuclease activity // inferred from direct assay /// 0004536 // deoxyribonuclease activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1368295_at NM_080786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080786.1 /DB_XREF=gi:18158456 /GEN=Slc21a9 /FEA=FLmRNA /CNT=16 /TID=Rn.44538.1 /TIER=FL+Stack /STK=6 /UG=Rn.44538 /LL=140860 /DEF=Rattus norvegicus solute carrier family 21 (organic anion transporter), member 9 (Slc21a9), mRNA. /PROD=solute carrier family 21 (organic aniontransporter), member 9 /FL=gb:NM_080786.1 gb:AF169410.1 gb:AF169409.1 NM_080786 solute carrier organic anion transporter family, member 2b1 Slco2b1 140860 NM_080786 0001889 // liver development // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015721 // bile acid and bile salt transport // inferred from direct assay /// 0071718 // sodium-independent icosanoid transport // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0008514 // organic anion transmembrane transporter activity // not recorded /// 0008514 // organic anion transmembrane transporter activity // inferred from electronic annotation /// 0015125 // bile acid transmembrane transporter activity // inferred from direct assay /// 0015347 // sodium-independent organic anion transmembrane transporter activity // inferred from direct assay /// 0015347 // sodium-independent organic anion transmembrane transporter activity // inferred from electronic annotation /// 0015347 // sodium-independent organic anion transmembrane transporter activity // not recorded 1368296_at AF169410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF169410.1 /DB_XREF=gi:9622205 /FEA=FLmRNA /CNT=16 /TID=Rn.44538.1 /TIER=FL /STK=1 /UG=Rn.44538 /LL=140860 /UG_GENE=Slc21a9 /DEF=Rattus norvegicus organic anion transporter moat1 splice variant mRNA, complete cds. /PROD=organic anion transporter moat1 splice variant /FL=gb:NM_080786.1 gb:AF169410.1 gb:AF169409.1 AF169410 solute carrier organic anion transporter family, member 2b1 Slco2b1 140860 NM_080786 0001889 // liver development // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015721 // bile acid and bile salt transport // inferred from direct assay /// 0071718 // sodium-independent icosanoid transport // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0008514 // organic anion transmembrane transporter activity // not recorded /// 0008514 // organic anion transmembrane transporter activity // inferred from electronic annotation /// 0015125 // bile acid transmembrane transporter activity // inferred from direct assay /// 0015347 // sodium-independent organic anion transmembrane transporter activity // inferred from direct assay /// 0015347 // sodium-independent organic anion transmembrane transporter activity // inferred from electronic annotation /// 0015347 // sodium-independent organic anion transmembrane transporter activity // not recorded 1368297_at NM_033442 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_033442.1 /DB_XREF=gi:15559216 /GEN=Gata2 /FEA=FLmRNA /CNT=16 /TID=Rn.34322.1 /TIER=FL+Stack /STK=6 /UG=Rn.34322 /LL=25159 /DEF=Rattus norvegicus GATA-bindning protein 2 (Gata2), mRNA. /PROD=GATA-bindning protein 2 /FL=gb:NM_033442.1 gb:AY032734.1 gb:AF345897.1 NM_033442 GATA binding protein 2 Gata2 25159 NM_033442 0001709 // cell fate determination // inferred from electronic annotation /// 0001709 // cell fate determination // not recorded /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0001892 // embryonic placenta development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006909 // phagocytosis // inferred from direct assay /// 0006909 // phagocytosis // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0021983 // pituitary gland development // not recorded /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded /// 0050766 // positive regulation of phagocytosis // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368298_at NM_022600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022600.1 /DB_XREF=gi:12018267 /GEN=Adcy5 /FEA=FLmRNA /CNT=15 /TID=Rn.6278.1 /TIER=FL+Stack /STK=6 /UG=Rn.6278 /LL=64532 /DEF=Rattus norvegicus adenylate cyclase 5 (Adcy5), mRNA. /PROD=adenylate cyclase 5 /FL=gb:M96159.1 gb:NM_022600.1 NM_022600 adenylate cyclase 5 Adcy5 64532 NM_022600 0001973 // adenosine receptor signaling pathway // not recorded /// 0006171 // cAMP biosynthetic process // inferred from direct assay /// 0006171 // cAMP biosynthetic process // not recorded /// 0006171 // cAMP biosynthetic process // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007191 // activation of adenylate cyclase activity by dopamine receptor signaling pathway // not recorded /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007195 // inhibition of adenylate cyclase activity by dopamine receptor signaling pathway // not recorded /// 0007626 // locomotory behavior // not recorded /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0034199 // activation of protein kinase A activity // not recorded /// 0050885 // neuromuscular process controlling balance // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from direct assay /// 0044424 // intracellular part // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004016 // adenylate cyclase activity // inferred from direct assay /// 0004016 // adenylate cyclase activity // inferred from electronic annotation /// 0004016 // adenylate cyclase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008294 // calcium- and calmodulin-responsive adenylate cyclase activity // inferred from direct assay /// 0016829 // lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368299_at NM_080411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080411.1 /DB_XREF=gi:17939357 /GEN=Gpr83 /FEA=FLmRNA /CNT=15 /TID=Rn.63075.1 /TIER=FL+Stack /STK=6 /UG=Rn.63075 /LL=140595 /DEF=Rattus norvegicus G protein-coupled receptor 83 (Gpr83), mRNA. /PROD=G protein-coupled receptor 83 /FL=gb:AY029071.1 gb:NM_080411.1 NM_080411 G protein-coupled receptor 83 Gpr83 140595 NM_080411 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004983 // neuropeptide Y receptor activity // inferred from electronic annotation 1368300_at NM_053294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053294.2 /DB_XREF=gi:19923696 /GEN=Adora2a /FEA=FLmRNA /CNT=14 /TID=Rn.11180.1 /TIER=FL+Stack /STK=6 /UG=Rn.11180 /LL=25369 /DEF=Rattus norvegicus Adenosine A2a-receptor (Adora2a), mRNA. /PROD=adenosine A2a-receptor /FL=gb:AF228684.1 gb:NM_053294.2 gb:M91214.1 NM_053294 adenosine A2a receptor Adora2a 25369 NM_053294 0001963 // synaptic transmission, dopaminergic // inferred from electronic annotation /// 0001963 // synaptic transmission, dopaminergic // not recorded /// 0001973 // adenosine receptor signaling pathway // inferred from direct assay /// 0001973 // adenosine receptor signaling pathway // not recorded /// 0001973 // adenosine receptor signaling pathway // inferred from electronic annotation /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0001975 // response to amphetamine // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006469 // negative regulation of protein kinase activity // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from mutant phenotype /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007190 // activation of adenylate cyclase activity // not recorded /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007271 // synaptic transmission, cholinergic // inferred from mutant phenotype /// 0007626 // locomotory behavior // inferred from mutant phenotype /// 0007626 // locomotory behavior // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0014049 // positive regulation of glutamate secretion // inferred from direct assay /// 0014057 // positive regulation of acetylcholine secretion // inferred from mutant phenotype /// 0014061 // regulation of norepinephrine secretion // inferred from mutant phenotype /// 0030146 // diuresis // inferred from mutant phenotype /// 0030147 // natriuresis // inferred from mutant phenotype /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // not recorded /// 0031000 // response to caffeine // inferred from direct assay /// 0031558 // induction of apoptosis in response to chemical stimulus // inferred from electronic annotation /// 0031558 // induction of apoptosis in response to chemical stimulus // not recorded /// 0032230 // positive regulation of synaptic transmission, GABAergic // inferred from electronic annotation /// 0032230 // positive regulation of synaptic transmission, GABAergic // not recorded /// 0035249 // synaptic transmission, glutamatergic // inferred from direct assay /// 0040013 // negative regulation of locomotion // inferred from direct assay /// 0042311 // vasodilation // inferred from mutant phenotype /// 0042755 // eating behavior // inferred from mutant phenotype /// 0042755 // eating behavior // not recorded /// 0042755 // eating behavior // inferred from electronic annotation /// 0043116 // negative regulation of vascular permeability // inferred from mutant phenotype /// 0043154 // negative regulation of caspase activity // inferred from direct assay /// 0043279 // response to alkaloid // inferred from mutant phenotype /// 0043524 // negative regulation of neuron apoptosis // inferred from direct assay /// 0045938 // positive regulation of circadian sleep/wake cycle, sleep // inferred from direct assay /// 0046636 // negative regulation of alpha-beta T cell activation // inferred from electronic annotation /// 0046636 // negative regulation of alpha-beta T cell activation // not recorded /// 0048143 // astrocyte activation // inferred from mutant phenotype /// 0048167 // regulation of synaptic plasticity // inferred from direct assay /// 0048812 // neuron projection morphogenesis // inferred from direct assay /// 0048812 // neuron projection morphogenesis // inferred from mutant phenotype /// 0050714 // positive regulation of protein secretion // inferred from direct assay /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // not recorded /// 0051881 // regulation of mitochondrial membrane potential // inferred from direct assay /// 0051899 // membrane depolarization // inferred from mutant phenotype /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // inferred from mutant phenotype /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from direct assay /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from direct assay /// 0060080 // regulation of inhibitory postsynaptic membrane potential // inferred from electronic annotation /// 0060080 // regulation of inhibitory postsynaptic membrane potential // not recorded /// 0060134 // prepulse inhibition // inferred from mutant phenotype 0000139 // Golgi membrane // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005882 // intermediate filament // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030673 // axolemma // inferred from direct assay /// 0032279 // asymmetric synapse // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0044446 // intracellular organelle part // not recorded /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0048786 // presynaptic active zone // inferred from direct assay 0001609 // adenosine receptor activity, G-protein coupled // not recorded /// 0001609 // adenosine receptor activity, G-protein coupled // inferred from direct assay /// 0001609 // adenosine receptor activity, G-protein coupled // traceable author statement /// 0001609 // adenosine receptor activity, G-protein coupled // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0019899 // enzyme binding // not recorded /// 0031802 // type 5 metabotropic glutamate receptor binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0051372 // nonmuscle alpha-actinin binding // inferred from direct assay 1368301_at AF228684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF228684.1 /DB_XREF=gi:7407132 /FEA=FLmRNA /CNT=14 /TID=Rn.11180.1 /TIER=FL /STK=1 /UG=Rn.11180 /LL=25369 /UG_GENE=Adora2a /DEF=Rattus norvegicus A2A adenosine receptor mRNA, complete cds. /PROD=A2A adenosine receptor /FL=gb:AF228684.1 gb:NM_053294.2 gb:M91214.1 AF228684 adenosine A2a receptor Adora2a 25369 NM_053294 0001963 // synaptic transmission, dopaminergic // inferred from electronic annotation /// 0001963 // synaptic transmission, dopaminergic // not recorded /// 0001973 // adenosine receptor signaling pathway // inferred from direct assay /// 0001973 // adenosine receptor signaling pathway // not recorded /// 0001973 // adenosine receptor signaling pathway // inferred from electronic annotation /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0001975 // response to amphetamine // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006469 // negative regulation of protein kinase activity // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from mutant phenotype /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007190 // activation of adenylate cyclase activity // not recorded /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007271 // synaptic transmission, cholinergic // inferred from mutant phenotype /// 0007626 // locomotory behavior // inferred from mutant phenotype /// 0007626 // locomotory behavior // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0014049 // positive regulation of glutamate secretion // inferred from direct assay /// 0014057 // positive regulation of acetylcholine secretion // inferred from mutant phenotype /// 0014061 // regulation of norepinephrine secretion // inferred from mutant phenotype /// 0030146 // diuresis // inferred from mutant phenotype /// 0030147 // natriuresis // inferred from mutant phenotype /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // not recorded /// 0031000 // response to caffeine // inferred from direct assay /// 0031558 // induction of apoptosis in response to chemical stimulus // inferred from electronic annotation /// 0031558 // induction of apoptosis in response to chemical stimulus // not recorded /// 0032230 // positive regulation of synaptic transmission, GABAergic // inferred from electronic annotation /// 0032230 // positive regulation of synaptic transmission, GABAergic // not recorded /// 0035249 // synaptic transmission, glutamatergic // inferred from direct assay /// 0040013 // negative regulation of locomotion // inferred from direct assay /// 0042311 // vasodilation // inferred from mutant phenotype /// 0042755 // eating behavior // inferred from mutant phenotype /// 0042755 // eating behavior // not recorded /// 0042755 // eating behavior // inferred from electronic annotation /// 0043116 // negative regulation of vascular permeability // inferred from mutant phenotype /// 0043154 // negative regulation of caspase activity // inferred from direct assay /// 0043279 // response to alkaloid // inferred from mutant phenotype /// 0043524 // negative regulation of neuron apoptosis // inferred from direct assay /// 0045938 // positive regulation of circadian sleep/wake cycle, sleep // inferred from direct assay /// 0046636 // negative regulation of alpha-beta T cell activation // inferred from electronic annotation /// 0046636 // negative regulation of alpha-beta T cell activation // not recorded /// 0048143 // astrocyte activation // inferred from mutant phenotype /// 0048167 // regulation of synaptic plasticity // inferred from direct assay /// 0048812 // neuron projection morphogenesis // inferred from direct assay /// 0048812 // neuron projection morphogenesis // inferred from mutant phenotype /// 0050714 // positive regulation of protein secretion // inferred from direct assay /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // not recorded /// 0051881 // regulation of mitochondrial membrane potential // inferred from direct assay /// 0051899 // membrane depolarization // inferred from mutant phenotype /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // inferred from mutant phenotype /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from direct assay /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from direct assay /// 0060080 // regulation of inhibitory postsynaptic membrane potential // inferred from electronic annotation /// 0060080 // regulation of inhibitory postsynaptic membrane potential // not recorded /// 0060134 // prepulse inhibition // inferred from mutant phenotype 0000139 // Golgi membrane // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005882 // intermediate filament // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030673 // axolemma // inferred from direct assay /// 0032279 // asymmetric synapse // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0044446 // intracellular organelle part // not recorded /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0048786 // presynaptic active zone // inferred from direct assay 0001609 // adenosine receptor activity, G-protein coupled // not recorded /// 0001609 // adenosine receptor activity, G-protein coupled // inferred from direct assay /// 0001609 // adenosine receptor activity, G-protein coupled // traceable author statement /// 0001609 // adenosine receptor activity, G-protein coupled // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0019899 // enzyme binding // not recorded /// 0031802 // type 5 metabotropic glutamate receptor binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0051372 // nonmuscle alpha-actinin binding // inferred from direct assay 1368302_at NM_031059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031059.1 /DB_XREF=gi:13592000 /GEN=Msx1 /FEA=FLmRNA /CNT=12 /TID=Rn.18117.1 /TIER=FL+Stack /STK=6 /UG=Rn.18117 /LL=81710 /DEF=Rattus norvegicus homeo box, msh-like 1 (Msx1), mRNA. /PROD=homeo box, msh-like 1 /FL=gb:D83036.1 gb:NM_031059.1 NM_031059 msh homeobox 1 Msx1 81710 NM_031059 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001837 // epithelial to mesenchymal transition // inferred from electronic annotation /// 0001837 // epithelial to mesenchymal transition // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007517 // muscle organ development // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010463 // mesenchymal cell proliferation // inferred from electronic annotation /// 0010463 // mesenchymal cell proliferation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030509 // BMP signaling pathway // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0030901 // midbrain development // inferred from electronic annotation /// 0030901 // midbrain development // not recorded /// 0042476 // odontogenesis // inferred from electronic annotation /// 0042476 // odontogenesis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0051216 // cartilage development // inferred from mutant phenotype /// 0051789 // response to protein stimulus // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0071445 // cellular response to protein stimulus // inferred from electronic annotation /// 0071445 // cellular response to protein stimulus // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1368303_at NM_031678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031678.1 /DB_XREF=gi:13928941 /GEN=Per2 /FEA=FLmRNA /CNT=11 /TID=Rn.25935.1 /TIER=FL+Stack /STK=6 /UG=Rn.25935 /LL=63840 /DEF=Rattus norvegicus period homolog 2 (Drosophila) (Per2), mRNA. /PROD=period homolog 2 (Drosophila) /FL=gb:NM_031678.1 gb:AB016532.1 NM_031678 period homolog 2 (Drosophila) Per2 63840 NM_031678 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from expression pattern /// 0007623 // circadian rhythm // not recorded /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1368304_at NM_053433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053433.1 /DB_XREF=gi:16758173 /GEN=Fmo3 /FEA=FLmRNA /CNT=11 /TID=Rn.11676.1 /TIER=FL+Stack /STK=6 /UG=Rn.11676 /LL=84493 /DEF=Rattus norvegicus flavin-containing monooxygenase 3 (Fmo3), mRNA. /PROD=flavin-containing monooxygenase 3 /FL=gb:AF286595.1 gb:NM_053433.1 NM_053433 flavin containing monooxygenase 3 Fmo3 84493 NM_053433 0017144 // drug metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031227 // intrinsic to endoplasmic reticulum membrane // inferred from electronic annotation 0004497 // monooxygenase activity // traceable author statement /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004499 // flavin-containing monooxygenase activity // inferred from direct assay /// 0004499 // flavin-containing monooxygenase activity // not recorded /// 0004499 // flavin-containing monooxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from physical interaction /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from physical interaction /// 0050661 // NADP or NADPH binding // inferred from electronic annotation 1368305_at NM_031775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031775.1 /DB_XREF=gi:13929091 /GEN=Casp6 /FEA=FLmRNA /CNT=11 /TID=Rn.31756.1 /TIER=FL+Stack /STK=6 /UG=Rn.31756 /LL=83584 /DEF=Rattus norvegicus caspase 6 (Casp6), mRNA. /PROD=caspase 6 /FL=gb:NM_031775.1 gb:AF025670.1 NM_031775 caspase 6 Casp6 83584 NM_031775 0002088 // lens development in camera-type eye // inferred from expression pattern /// 0002525 // acute inflammatory response to non-antigenic stimulus // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0006915 // apoptosis // traceable author statement /// 0006915 // apoptosis // inferred from electronic annotation /// 0009408 // response to heat // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from mutant phenotype /// 0010033 // response to organic substance // inferred from expression pattern /// 0010038 // response to metal ion // inferred from expression pattern /// 0010039 // response to iron ion // inferred from mutant phenotype /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010332 // response to gamma radiation // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from direct assay /// 0042542 // response to hydrogen peroxide // inferred from direct assay /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0046670 // positive regulation of retinal cell programmed cell death // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded 0004175 // endopeptidase activity // inferred from direct assay /// 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004197 // cysteine-type endopeptidase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1368306_at U08259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U08259.1 /DB_XREF=gi:475549 /FEA=FLmRNA /CNT=10 /TID=Rn.9709.1 /TIER=FL+Stack /STK=6 /UG=Rn.9709 /LL=24411 /UG_GENE=Grin2c /DEF=Rattus norvegicus Sprague-Dawley N-methyl-D-aspartate receptor NMDAR2C subunit mRNA, complete cds. /PROD=N-methyl-D-aspartate receptor NMDAR2C subunit /FL=gb:M91563.1 gb:U08259.1 gb:NM_012575.1 U08259 glutamate receptor, ionotropic, N-methyl D-aspartate 2C Grin2c 24411 NM_012575 0001964 // startle response // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0007165 // signal transduction // not recorded /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0009611 // response to wounding // inferred from electronic annotation /// 0009611 // response to wounding // not recorded /// 0033058 // directional locomotion // inferred from electronic annotation /// 0033058 // directional locomotion // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0042177 // negative regulation of protein catabolic process // inferred from electronic annotation /// 0042177 // negative regulation of protein catabolic process // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded /// 0048167 // regulation of synaptic plasticity // not recorded /// 0050804 // regulation of synaptic transmission // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0014069 // postsynaptic density // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // inferred from direct assay /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // not recorded /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030288 // outer membrane-bounded periplasmic space // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from direct assay /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from direct assay /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // not recorded /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // inferred from direct assay /// 0005261 // cation channel activity // not recorded /// 0005261 // cation channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0047485 // protein N-terminus binding // inferred from physical interaction 1368307_at NM_130423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130423.1 /DB_XREF=gi:18426853 /GEN=Ggtl3 /FEA=FLmRNA /CNT=10 /TID=Rn.15462.1 /TIER=FL+Stack /STK=6 /UG=Rn.15462 /LL=156275 /DEF=Rattus norvegicus gamma-glutamyltransferase-like 3 (Ggtl3), mRNA. /PROD=gamma-glutamyltransferase-like 3 /FL=gb:NM_130423.1 gb:AF244973.1 NM_130423 gamma-glutamyltransferase 7 Ggt7 156275 NM_130423 0006750 // glutathione biosynthetic process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003840 // gamma-glutamyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368308_at NM_012603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012603.1 /DB_XREF=gi:6981229 /GEN=Myc /FEA=FLmRNA /CNT=10 /TID=Rn.12072.1 /TIER=FL+Stack /STK=6 /UG=Rn.12072 /LL=24577 /DEF=Rattus norvegicus Avian myelocytomatosis viral (v-myc) oncogene homolog (Myc), mRNA. /PROD=avian myelocytomatosis viral (v-myc) oncogenehomolog /FL=gb:NM_012603.1 NM_012603 myelocytomatosis oncogene Myc 24577 NM_012603 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from sequence or structural similarity /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001783 // B cell apoptosis // not recorded /// 0001783 // B cell apoptosis // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from sequence or structural similarity /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002904 // positive regulation of B cell apoptosis // inferred from electronic annotation /// 0002904 // positive regulation of B cell apoptosis // not recorded /// 0006006 // glucose metabolic process // inferred from mutant phenotype /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // inferred from electronic annotation /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006351 // transcription, DNA-dependent // inferred from direct assay /// 0006352 // transcription initiation // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0007346 // regulation of mitotic cell cycle // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008629 // induction of apoptosis by intracellular signals // inferred from electronic annotation /// 0008629 // induction of apoptosis by intracellular signals // not recorded /// 0008633 // activation of pro-apoptotic gene products // inferred from electronic annotation /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0008634 // negative regulation of survival gene product expression // inferred from electronic annotation /// 0008634 // negative regulation of survival gene product expression // not recorded /// 0009314 // response to radiation // inferred from electronic annotation /// 0009314 // response to radiation // not recorded /// 0009405 // pathogenesis // traceable author statement /// 0010468 // regulation of gene expression // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016485 // protein processing // inferred from electronic annotation /// 0016485 // protein processing // not recorded /// 0032091 // negative regulation of protein binding // inferred from electronic annotation /// 0032091 // negative regulation of protein binding // not recorded /// 0032204 // regulation of telomere maintenance // inferred from electronic annotation /// 0032204 // regulation of telomere maintenance // not recorded /// 0042474 // middle ear morphogenesis // inferred from electronic annotation /// 0042474 // middle ear morphogenesis // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0043085 // positive regulation of catalytic activity // inferred from electronic annotation /// 0043085 // positive regulation of catalytic activity // not recorded /// 0043279 // response to alkaloid // inferred from electronic annotation /// 0043279 // response to alkaloid // not recorded /// 0043473 // pigmentation // inferred from electronic annotation /// 0043473 // pigmentation // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from direct assay /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // not recorded /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // inferred from electronic annotation /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // not recorded /// 0071445 // cellular response to protein stimulus // not recorded /// 0090096 // positive regulation of metanephric cap mesenchymal cell proliferation // not recorded /// 0090096 // positive regulation of metanephric cap mesenchymal cell proliferation // inferred from sequence or structural similarity /// 0090096 // positive regulation of metanephric cap mesenchymal cell proliferation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005654 // nucleoplasm // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005819 // spindle // not recorded /// 0016604 // nuclear body // inferred from electronic annotation /// 0016604 // nuclear body // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0070888 // E-box binding // not recorded 1368309_at NM_022584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022584.1 /DB_XREF=gi:12018235 /GEN=Txnrd2 /FEA=FLmRNA /CNT=10 /TID=Rn.6300.1 /TIER=FL+Stack /STK=6 /UG=Rn.6300 /LL=50551 /DEF=Rattus norvegicus thioredoxin reductase 2 (Txnrd2), mRNA. /PROD=thioredoxin reductase 2 /FL=gb:AF072865.1 gb:NM_022584.1 NM_022584 thioredoxin reductase 2 Txnrd2 50551 NM_022584 0000305 // response to oxygen radical // traceable author statement /// 0007507 // heart development // not recorded /// 0010269 // response to selenium ion // inferred from direct assay /// 0030097 // hemopoiesis // not recorded /// 0042542 // response to hydrogen peroxide // traceable author statement /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0004791 // thioredoxin-disulfide reductase activity // inferred from direct assay /// 0004791 // thioredoxin-disulfide reductase activity // inferred from electronic annotation /// 0004791 // thioredoxin-disulfide reductase activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016668 // oxidoreductase activity, acting on a sulfur group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046983 // protein dimerization activity // traceable author statement /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from electronic annotation 1368310_at NM_017115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017115.2 /DB_XREF=gi:21071081 /GEN=Myog /FEA=FLmRNA /CNT=10 /TID=Rn.9465.1 /TIER=FL+Stack /STK=6 /UG=Rn.9465 /LL=29148 /DEF=Rattus norvegicus myogenin (Myog), mRNA. /PROD=myogenin /FL=gb:AF054894.1 gb:M24393.1 gb:NM_017115.2 NM_017115 myogenin Myog 29148 NM_017115 0001503 // ossification // inferred from electronic annotation /// 0001503 // ossification // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007517 // muscle organ development // not recorded /// 0007519 // skeletal muscle tissue development // not recorded /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048741 // skeletal muscle fiber development // inferred from electronic annotation /// 0048741 // skeletal muscle fiber development // not recorded /// 0071285 // cellular response to lithium ion // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1368311_at NM_012861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012861.1 /DB_XREF=gi:6981201 /GEN=Mgmt /FEA=FLmRNA /CNT=10 /TID=Rn.9836.1 /TIER=FL+Stack /STK=6 /UG=Rn.9836 /LL=25332 /DEF=Rattus norvegicus O6-methylguanine-DNA methyltranferase (Mgmt), mRNA. /PROD=o6-methylguanine-DNA methyltranferase /FL=gb:NM_012861.1 gb:M76704.1 NM_012861 O-6-methylguanine-DNA methyltransferase Mgmt 25332 NM_012861 0006281 // DNA repair // inferred from electronic annotation /// 0006281 // DNA repair // not recorded /// 0006307 // DNA dealkylation involved in DNA repair // inferred from direct assay /// 0006307 // DNA dealkylation involved in DNA repair // not recorded /// 0006307 // DNA dealkylation involved in DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from expression pattern /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0009636 // response to toxin // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0032259 // methylation // not recorded /// 0034599 // cellular response to oxidative stress // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043281 // regulation of caspase activity // inferred from electronic annotation /// 0043281 // regulation of caspase activity // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0045739 // positive regulation of DNA repair // inferred from direct assay /// 0051593 // response to folic acid // inferred from expression pattern /// 0060548 // negative regulation of cell death // inferred from direct assay /// 0060644 // mammary gland epithelial cell differentiation // inferred from expression pattern /// 0071407 // cellular response to organic cyclic substance // inferred from expression pattern /// 0071479 // cellular response to ionizing radiation // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003908 // methylated-DNA-[protein]-cysteine S-methyltransferase activity // inferred from direct assay /// 0003908 // methylated-DNA-[protein]-cysteine S-methyltransferase activity // inferred from electronic annotation /// 0003908 // methylated-DNA-[protein]-cysteine S-methyltransferase activity // not recorded /// 0005509 // calcium ion binding // inferred from direct assay /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008168 // methyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368312_at M25649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M25649.1 /DB_XREF=gi:205893 /FEA=FLmRNA /CNT=9 /TID=Rn.48915.1 /TIER=FL+Stack /STK=6 /UG=Rn.48915 /LL=25504 /UG_GENE=Oxt /UG_TITLE=Oxytocinneurophysin /DEF=Rat oxytocin mRNA, complete cds. /FL=gb:M25649.1 gb:NM_012996.1 M25649 oxytocin, prepropeptide Oxt 25504 NM_012996 0001975 // response to amphetamine // inferred from expression pattern /// 0002027 // regulation of heart rate // inferred from direct assay /// 0002125 // maternal aggressive behavior // inferred from expression pattern /// 0003077 // negative regulation of diuresis // inferred from direct assay /// 0003079 // positive regulation of natriuresis // inferred from direct assay /// 0006950 // response to stress // inferred from expression pattern /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007507 // heart development // inferred from expression pattern /// 0007565 // female pregnancy // inferred from expression pattern /// 0007567 // parturition // traceable author statement /// 0007595 // lactation // traceable author statement /// 0007613 // memory // inferred from expression pattern /// 0007625 // grooming behavior // inferred from direct assay /// 0009744 // response to sucrose stimulus // inferred from expression pattern /// 0010701 // positive regulation of norepinephrine secretion // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014823 // response to activity // inferred from expression pattern /// 0030431 // sleep // inferred from direct assay /// 0032094 // response to food // inferred from expression pattern /// 0032308 // positive regulation of prostaglandin secretion // inferred from direct assay /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from direct assay /// 0034695 // response to prostaglandin E stimulus // inferred from expression pattern /// 0035176 // social behavior // inferred from direct assay /// 0042220 // response to cocaine // inferred from expression pattern /// 0042538 // hyperosmotic salinity response // inferred from expression pattern /// 0042711 // maternal behavior // inferred from direct assay /// 0042713 // sperm ejaculation // inferred from direct assay /// 0042755 // eating behavior // inferred from direct assay /// 0042756 // drinking behavior // inferred from direct assay /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0044058 // regulation of digestive system process // inferred from direct assay /// 0045472 // response to ether // inferred from expression pattern /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0045777 // positive regulation of blood pressure // inferred from direct assay /// 0045778 // positive regulation of ossification // inferred from direct assay /// 0045925 // positive regulation of female receptivity // inferred from direct assay /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0050806 // positive regulation of synaptic transmission // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern /// 0051602 // response to electrical stimulus // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0051930 // regulation of sensory perception of pain // inferred from direct assay /// 0051965 // positive regulation of synaptogenesis // inferred from direct assay /// 0060179 // male mating behavior // inferred from expression pattern /// 0060406 // positive regulation of penile erection // inferred from direct assay /// 0060450 // positive regulation of hindgut contraction // inferred from direct assay /// 0060455 // negative regulation of gastric acid secretion // inferred from direct assay /// 0070474 // positive regulation of uterine smooth muscle contraction // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay 0005179 // hormone activity // inferred from electronic annotation /// 0005184 // neuropeptide hormone activity // inferred from direct assay /// 0005184 // neuropeptide hormone activity // traceable author statement /// 0005185 // neurohypophyseal hormone activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0031855 // oxytocin receptor binding // inferred from direct assay 1368313_a_at AB041029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB041029.1 /DB_XREF=gi:7544147 /GEN=VR1L2 /FEA=FLmRNA /CNT=1 /TID=Rn.3073.4 /TIER=FL /STK=1 /UG=Rn.3073 /LL=83810 /DEF=Rattus norvegicus VR1L2 mRNA for vanilloid receptor type 1 like protein 2, complete cds. /PROD=vanilloid receptor type 1 like protein 2 /FL=gb:AB041029.1 AB041029 transient receptor potential cation channel, subfamily V, member 1 Trpv1 83810 NM_031982 0001659 // temperature homeostasis // inferred from electronic annotation /// 0001659 // temperature homeostasis // not recorded /// 0001660 // fever // inferred from electronic annotation /// 0001660 // fever // not recorded /// 0001774 // microglial cell activation // inferred from mutant phenotype /// 0002024 // diet induced thermogenesis // inferred from electronic annotation /// 0002024 // diet induced thermogenesis // not recorded /// 0002790 // peptide secretion // inferred from electronic annotation /// 0002790 // peptide secretion // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0009268 // response to pH // inferred from direct assay /// 0009268 // response to pH // inferred from expression pattern /// 0009268 // response to pH // not recorded /// 0009268 // response to pH // inferred from electronic annotation /// 0009408 // response to heat // inferred from direct assay /// 0009408 // response to heat // not recorded /// 0009408 // response to heat // inferred from electronic annotation /// 0014047 // glutamate secretion // inferred from direct assay /// 0014832 // urinary bladder smooth muscle contraction // not recorded /// 0014832 // urinary bladder smooth muscle contraction // inferred from electronic annotation /// 0019233 // sensory perception of pain // not recorded /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0042221 // response to chemical stimulus // inferred from electronic annotation /// 0042221 // response to chemical stimulus // not recorded /// 0042637 // catagen // inferred from electronic annotation /// 0042637 // catagen // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from mutant phenotype /// 0048265 // response to pain // not recorded /// 0048265 // response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // not recorded /// 0050954 // sensory perception of mechanical stimulus // inferred from electronic annotation /// 0050954 // sensory perception of mechanical stimulus // not recorded /// 0050955 // thermoception // not recorded /// 0050968 // detection of chemical stimulus involved in sensory perception of pain // inferred from electronic annotation /// 0050968 // detection of chemical stimulus involved in sensory perception of pain // not recorded /// 0060083 // smooth muscle contraction involved in micturition // inferred from electronic annotation /// 0060083 // smooth muscle contraction involved in micturition // not recorded /// 0060454 // positive regulation of gastric acid secretion // inferred from mutant phenotype /// 0070588 // calcium ion transmembrane transport // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern /// 0071502 // cellular response to temperature stimulus // inferred from expression pattern /// 0090212 // negative regulation of establishment of blood-brain barrier // inferred from mutant phenotype 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0030425 // dendrite // inferred from direct assay /// 0043005 // neuron projection // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // not recorded /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // inferred from direct assay /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008324 // cation transmembrane transporter activity // inferred from direct assay /// 0017081 // chloride channel regulator activity // inferred from direct assay 1368314_at NM_031756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031756.1 /DB_XREF=gi:13929061 /GEN=Ggcx /FEA=FLmRNA /CNT=9 /TID=Rn.22410.1 /TIER=FL+Stack /STK=6 /UG=Rn.22410 /LL=81716 /DEF=Rattus norvegicus gamma-glutamyl carboxylase (Ggcx), mRNA. /PROD=gamma-glutamyl carboxylase /FL=gb:AF065387.1 gb:NM_031756.1 NM_031756 gamma-glutamyl carboxylase Ggcx 81716 NM_031756 0009790 // embryo development // inferred from expression pattern /// 0017187 // peptidyl-glutamic acid carboxylation // inferred from direct assay /// 0017187 // peptidyl-glutamic acid carboxylation // inferred from electronic annotation /// 0032571 // response to vitamin K // inferred from expression pattern 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008488 // gamma-glutamyl carboxylase activity // inferred from direct assay /// 0008488 // gamma-glutamyl carboxylase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0019842 // vitamin binding // inferred from direct assay /// 0042277 // peptide binding // inferred by curator 1368315_at NM_053498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053498.1 /DB_XREF=gi:16758255 /GEN=Entpd6 /FEA=FLmRNA /CNT=9 /TID=Rn.27017.1 /TIER=FL+Stack /STK=6 /UG=Rn.27017 /LL=85260 /DEF=Rattus norvegicus ectonucleoside triphosphate diphosphohydrolase 6 (Entpd6), mRNA. /PROD=ectonucleoside triphosphate diphosphohydrolase6 /FL=gb:NM_053498.1 NM_053498 ectonucleoside triphosphate diphosphohydrolase 6 Entpd6 85260 NM_053498 0032026 // response to magnesium ion // inferred from direct assay /// 0051592 // response to calcium ion // inferred from direct assay 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005624 // membrane fraction // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008894 // guanosine-5'-triphosphate,3'-diphosphate diphosphatase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017110 // nucleoside-diphosphatase activity // inferred from direct assay /// 0017110 // nucleoside-diphosphatase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from direct assay 1368316_at NM_019158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019158.1 /DB_XREF=gi:9506394 /GEN=Aqp8 /FEA=FLmRNA /CNT=9 /TID=Rn.6315.1 /TIER=FL+Stack /STK=6 /UG=Rn.6315 /LL=29172 /DEF=Rattus norvegicus aquaporin 8 (Aqp8), mRNA. /PROD=aquaporin 8 /FL=gb:NM_019158.1 gb:AF007775.1 gb:AB005547.1 NM_019158 aquaporin 8 Aqp8 29172 NM_019158 0006810 // transport // inferred from electronic annotation /// 0006833 // water transport // inferred from direct assay /// 0006833 // water transport // not recorded /// 0006833 // water transport // non-traceable author statement /// 0006833 // water transport // inferred from electronic annotation /// 0015722 // canalicular bile acid transport // inferred from direct assay /// 0071320 // cellular response to cAMP // inferred from electronic annotation /// 0071320 // cellular response to cAMP // not recorded 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded /// 0046691 // intracellular canaliculus // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0015250 // water channel activity // inferred from direct assay /// 0015250 // water channel activity // traceable author statement 1368317_at NM_019157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019157.1 /DB_XREF=gi:9506392 /GEN=Aqp7 /FEA=FLmRNA /CNT=9 /TID=Rn.11111.1 /TIER=FL+Stack /STK=6 /UG=Rn.11111 /LL=29171 /DEF=Rattus norvegicus aquaporin 7 (Aqp7), mRNA. /PROD=aquaporin 7 /FL=gb:NM_019157.1 gb:AB000507.1 NM_019157 aquaporin 7 Aqp7 29171 NM_019157 0006810 // transport // inferred from electronic annotation /// 0006833 // water transport // inferred from direct assay /// 0006833 // water transport // traceable author statement /// 0007283 // spermatogenesis // inferred from expression pattern /// 0015793 // glycerol transport // inferred from direct assay /// 0015793 // glycerol transport // not recorded /// 0015793 // glycerol transport // inferred from electronic annotation /// 0015840 // urea transport // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070295 // renal water absorption // inferred from electronic annotation /// 0070295 // renal water absorption // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0031526 // brush border membrane // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0015250 // water channel activity // inferred from direct assay /// 0015250 // water channel activity // traceable author statement /// 0015254 // glycerol channel activity // inferred from direct assay /// 0015265 // urea channel activity // inferred from direct assay 1368318_at NM_031707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031707.1 /DB_XREF=gi:13928987 /GEN=Ruvbl1 /FEA=FLmRNA /CNT=19 /TID=Rn.37500.1 /TIER=FL+Stack /STK=6 /UG=Rn.37500 /LL=65137 /DEF=Rattus norvegicus RuvB-like protein 1 (Ruvbl1), mRNA. /PROD=RuvB-like protein 1 /FL=gb:AB007688.1 gb:AB017140.1 gb:NM_031707.1 NM_031707 homer homolog 1 (Drosophila) Homer1 29546 NM_031707 0003009 // skeletal muscle contraction // not recorded /// 0006950 // response to stress // inferred from expression pattern /// 0007216 // metabotropic glutamate receptor signaling pathway // inferred from direct assay /// 0007623 // circadian rhythm // inferred from expression pattern /// 0032236 // positive regulation of calcium ion transport via store-operated calcium channel activity // not recorded /// 0035094 // response to nicotine // inferred from expression pattern /// 0042220 // response to cocaine // inferred from expression pattern /// 0048741 // skeletal muscle fiber development // not recorded 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030018 // Z disc // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043034 // costamere // not recorded /// 0043198 // dendritic shaft // inferred from direct assay /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0060076 // excitatory synapse // inferred from direct assay 0005102 // receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0031802 // type 5 metabotropic glutamate receptor binding // inferred from physical interaction /// 0035256 // metabotropic glutamate receptor binding // inferred from physical interaction 1368319_a_at AB007688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB007688.1 /DB_XREF=gi:3452559 /GEN=vesl-1 /FEA=FLmRNA /CNT=19 /TID=Rn.37500.1 /TIER=FL /STK=1 /UG=Rn.37500 /LL=65137 /DEF=Rattus norvegicus mRNA for Vesl-1L, complete cds. /PROD=Vesl-1L /FL=gb:AB007688.1 gb:AB017140.1 gb:NM_031707.1 AB007688 homer homolog 1 (Drosophila) Homer1 29546 NM_031707 0003009 // skeletal muscle contraction // not recorded /// 0006950 // response to stress // inferred from expression pattern /// 0007216 // metabotropic glutamate receptor signaling pathway // inferred from direct assay /// 0007623 // circadian rhythm // inferred from expression pattern /// 0032236 // positive regulation of calcium ion transport via store-operated calcium channel activity // not recorded /// 0035094 // response to nicotine // inferred from expression pattern /// 0042220 // response to cocaine // inferred from expression pattern /// 0048741 // skeletal muscle fiber development // not recorded 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030018 // Z disc // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043034 // costamere // not recorded /// 0043198 // dendritic shaft // inferred from direct assay /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0060076 // excitatory synapse // inferred from direct assay 0005102 // receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0031802 // type 5 metabotropic glutamate receptor binding // inferred from physical interaction /// 0035256 // metabotropic glutamate receptor binding // inferred from physical interaction 1368320_at NM_031521 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031521.1 /DB_XREF=gi:13928705 /GEN=Ncam1 /FEA=FLmRNA /CNT=11 /TID=Rn.11283.1 /TIER=FL+Stack /STK=6 /UG=Rn.11283 /LL=24586 /DEF=Rattus norvegicus Cell adhesion molecule, neural (CD56) (Ncam1), mRNA. /PROD=neural cell adhesion molecule /FL=gb:NM_031521.1 NM_031521 neural cell adhesion molecule 1 Ncam1 24586 NM_031521 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007568 // aging // inferred from direct assay /// 0007611 // learning or memory // inferred from direct assay /// 0007611 // learning or memory // inferred from mutant phenotype /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010288 // response to lead ion // inferred from direct assay /// 0014012 // peripheral nervous system axon regeneration // inferred from expression pattern /// 0014076 // response to fluoxetine // inferred from direct assay /// 0016338 // calcium-independent cell-cell adhesion // traceable author statement /// 0021794 // thalamus development // inferred from direct assay /// 0031100 // organ regeneration // inferred from expression pattern /// 0033554 // cellular response to stress // inferred from expression pattern /// 0033555 // multicellular organismal response to stress // inferred from direct assay /// 0034109 // homotypic cell-cell adhesion // not recorded /// 0042220 // response to cocaine // inferred from direct assay /// 0048666 // neuron development // inferred from direct assay /// 0050850 // positive regulation of calcium-mediated signaling // not recorded /// 0051930 // regulation of sensory perception of pain // inferred from mutant phenotype /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from mutant phenotype /// 0060548 // negative regulation of cell death // inferred from mutant phenotype /// 0071241 // cellular response to inorganic substance // inferred from expression pattern 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0030426 // growth cone // traceable author statement /// 0043025 // neuronal cell body // inferred from direct assay /// 0043025 // neuronal cell body // not recorded 0005104 // fibroblast growth factor receptor binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // traceable author statement /// 0008201 // heparin binding // inferred from electronic annotation /// 0019902 // phosphatase binding // inferred from direct assay /// 0030275 // LRR domain binding // inferred from physical interaction 1368321_at NM_012551 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012551.1 /DB_XREF=gi:6978798 /GEN=Egr1 /FEA=FLmRNA /CNT=11 /TID=Rn.9096.1 /TIER=FL+Stack /STK=6 /UG=Rn.9096 /LL=24330 /DEF=Rattus norvegicus Early growth response 1 (Egr1), mRNA. /PROD=early growth response 1 /FL=gb:NM_012551.1 gb:M18416.1 NM_012551 early growth response 1 Egr1 24330 NM_012551 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007611 // learning or memory // inferred from expression pattern /// 0007611 // learning or memory // inferred from mutant phenotype /// 0009749 // response to glucose stimulus // inferred from electronic annotation /// 0030217 // T cell differentiation // inferred from electronic annotation /// 0030217 // T cell differentiation // not recorded /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030509 // BMP signaling pathway // not recorded /// 0032868 // response to insulin stimulus // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from mutant phenotype /// 0051789 // response to protein stimulus // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0071445 // cellular response to protein stimulus // inferred from electronic annotation /// 0071445 // cellular response to protein stimulus // not recorded /// 0071504 // cellular response to heparin // inferred from direct assay /// 0071506 // cellular response to mycophenolic acid // inferred from direct assay /// 0072110 // glomerular mesangial cell proliferation // inferred from mutant phenotype /// 0072303 // positive regulation of glomerular metanephric mesangial cell proliferation // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368322_at NM_012880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012880.1 /DB_XREF=gi:6981567 /GEN=Sod3 /FEA=FLmRNA /CNT=11 /TID=Rn.10358.1 /TIER=FL+Stack /STK=6 /UG=Rn.10358 /LL=25352 /DEF=Rattus norvegicus Superoxide dismutase 3 (Sod3), mRNA. /PROD=superoxide dismutase 3 /FL=gb:Z24721.1 gb:NM_012880.1 NM_012880 superoxide dismutase 3, extracellular Sod3 25352 NM_012880 0000303 // response to superoxide // traceable author statement /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0006801 // superoxide metabolic process // inferred from electronic annotation /// 0006950 // response to stress // inferred from mutant phenotype /// 0008152 // metabolic process // not recorded /// 0046688 // response to copper ion // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // not recorded 0004784 // superoxide dismutase activity // inferred from direct assay /// 0004784 // superoxide dismutase activity // not recorded /// 0004784 // superoxide dismutase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016209 // antioxidant activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368323_at NM_017200 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017200.1 /DB_XREF=gi:8394442 /GEN=Tfpi /FEA=FLmRNA /CNT=11 /TID=Rn.15795.1 /TIER=FL+Stack /STK=6 /UG=Rn.15795 /LL=29436 /DEF=Rattus norvegicus tissue factor pathway inhibitor (Tfpi), mRNA. /PROD=tissue factor pathway inhibitor /FL=gb:D10926.1 gb:NM_017200.1 NM_017200 tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) Tfpi 29436 NM_001177321 /// NM_017200 0007596 // blood coagulation // inferred from electronic annotation /// 0007598 // blood coagulation, extrinsic pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005886 // plasma membrane // not recorded 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // traceable author statement /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1368324_at NM_031542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031542.1 /DB_XREF=gi:13928731 /GEN=Brca2 /FEA=FLmRNA /CNT=9 /TID=Rn.10819.1 /TIER=FL+Stack /STK=6 /UG=Rn.10819 /LL=25082 /DEF=Rattus norvegicus Breast cancer 2 (Brca2), mRNA. /PROD=breast cancer 2 /FL=gb:U89653.1 gb:NM_031542.1 NM_031542 breast cancer 2 Brca2 360254 NM_031542 0000724 // double-strand break repair via homologous recombination // not recorded /// 0000724 // double-strand break repair via homologous recombination // inferred from sequence or structural similarity /// 0000724 // double-strand break repair via homologous recombination // inferred from electronic annotation /// 0001556 // oocyte maturation // inferred from electronic annotation /// 0001556 // oocyte maturation // not recorded /// 0001833 // inner cell mass cell proliferation // inferred from electronic annotation /// 0001833 // inner cell mass cell proliferation // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006289 // nucleotide-excision repair // inferred from electronic annotation /// 0006289 // nucleotide-excision repair // not recorded /// 0006302 // double-strand break repair // not recorded /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from direct assay /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006978 // DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator // inferred from electronic annotation /// 0006978 // DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007090 // regulation of S phase of mitotic cell cycle // inferred from electronic annotation /// 0007141 // male meiosis I // inferred from electronic annotation /// 0007141 // male meiosis I // not recorded /// 0007283 // spermatogenesis // inferred from mutant phenotype /// 0007283 // spermatogenesis // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007569 // cell aging // inferred from electronic annotation /// 0007569 // cell aging // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008585 // female gonad development // inferred from electronic annotation /// 0008585 // female gonad development // not recorded /// 0008630 // DNA damage response, signal transduction resulting in induction of apoptosis // not recorded /// 0008630 // DNA damage response, signal transduction resulting in induction of apoptosis // inferred from electronic annotation /// 0010165 // response to X-ray // inferred from electronic annotation /// 0010165 // response to X-ray // not recorded /// 0010225 // response to UV-C // inferred from electronic annotation /// 0010225 // response to UV-C // not recorded /// 0010332 // response to gamma radiation // inferred from electronic annotation /// 0010332 // response to gamma radiation // not recorded /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded /// 0030879 // mammary gland development // inferred from mutant phenotype /// 0031619 // homologous chromosome orientation involved in meiotic metaphase I plate congression // inferred from mutant phenotype /// 0032465 // regulation of cytokinesis // inferred from electronic annotation /// 0032465 // regulation of cytokinesis // not recorded /// 0033205 // cell cycle cytokinesis // inferred from electronic annotation /// 0033205 // cell cycle cytokinesis // not recorded /// 0033595 // response to genistein // inferred from electronic annotation /// 0033595 // response to genistein // not recorded /// 0033600 // negative regulation of mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0033600 // negative regulation of mammary gland epithelial cell proliferation // not recorded /// 0035264 // multicellular organism growth // inferred from mutant phenotype /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // inferred from electronic annotation /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded /// 0043009 // chordate embryonic development // inferred from electronic annotation /// 0043009 // chordate embryonic development // not recorded /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0043627 // response to estrogen stimulus // not recorded /// 0043627 // response to estrogen stimulus // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // not recorded /// 0048478 // replication fork protection // inferred from electronic annotation /// 0048478 // replication fork protection // not recorded /// 0051276 // chromosome organization // inferred from electronic annotation /// 0051276 // chromosome organization // not recorded /// 0051298 // centrosome duplication // inferred from electronic annotation /// 0051298 // centrosome duplication // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0030141 // stored secretory granule // inferred from electronic annotation /// 0030141 // stored secretory granule // not recorded /// 0033593 // BRCA2-MAGE-D1 complex // inferred from electronic annotation /// 0033593 // BRCA2-MAGE-D1 complex // not recorded /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from electronic annotation 0002020 // protease binding // not recorded /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043015 // gamma-tubulin binding // inferred from electronic annotation /// 0043015 // gamma-tubulin binding // not recorded 1368325_at NM_012842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012842.1 /DB_XREF=gi:6978796 /GEN=Egf /FEA=FLmRNA /CNT=9 /TID=Rn.6075.1 /TIER=FL+Stack /STK=6 /UG=Rn.6075 /LL=25313 /DEF=Rattus norvegicus Epidermal growth factor (Egf), mRNA. /PROD=epidermal growth factor /FL=gb:U04842.1 gb:NM_012842.1 NM_012842 epidermal growth factor Egf 25313 NM_012842 0000186 // activation of MAPKK activity // inferred from electronic annotation /// 0000186 // activation of MAPKK activity // not recorded /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0007165 // signal transduction // not recorded /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from direct assay /// 0007173 // epidermal growth factor receptor signaling pathway // not recorded /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0021940 // positive regulation of granule cell precursor proliferation // inferred from electronic annotation /// 0021940 // positive regulation of granule cell precursor proliferation // not recorded /// 0034394 // protein localization at cell surface // not recorded /// 0035413 // positive regulation of catenin protein nuclear translocation // not recorded /// 0042327 // positive regulation of phosphorylation // inferred from electronic annotation /// 0042327 // positive regulation of phosphorylation // not recorded /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // not recorded /// 0045741 // positive regulation of epidermal growth factor receptor activity // inferred from electronic annotation /// 0045741 // positive regulation of epidermal growth factor receptor activity // not recorded /// 0045840 // positive regulation of mitosis // inferred from electronic annotation /// 0045840 // positive regulation of mitosis // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // not recorded /// 0050708 // regulation of protein secretion // inferred from mutant phenotype /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0051048 // negative regulation of secretion // inferred from electronic annotation /// 0051048 // negative regulation of secretion // not recorded /// 0060749 // mammary gland alveolus development // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // not recorded /// 0090279 // regulation of calcium ion import // not recorded 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // not recorded 0005154 // epidermal growth factor receptor binding // inferred from direct assay /// 0005154 // epidermal growth factor receptor binding // not recorded /// 0005154 // epidermal growth factor receptor binding // traceable author statement /// 0005154 // epidermal growth factor receptor binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded 1368326_at NM_031599 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031599.1 /DB_XREF=gi:13928815 /GEN=Eif2ak3 /FEA=FLmRNA /CNT=9 /TID=Rn.24897.1 /TIER=FL+Stack /STK=6 /UG=Rn.24897 /LL=29702 /DEF=Rattus norvegicus eukaryotic translation initiation factor 2 alpha kinase 3 (Eif2ak3), mRNA. /PROD=eukaryotic translation initiation factor 2 alphakinase 3 /FL=gb:AF096835.1 gb:NM_031599.1 NM_031599 eukaryotic translation initiation factor 2 alpha kinase 3 Eif2ak3 29702 NM_031599 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001503 // ossification // not recorded /// 0001503 // ossification // inferred from sequence or structural similarity /// 0001503 // ossification // inferred from electronic annotation /// 0002063 // chondrocyte development // inferred from electronic annotation /// 0002063 // chondrocyte development // not recorded /// 0006412 // translation // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0006926 // virus-infected cell apoptosis // inferred from electronic annotation /// 0006926 // virus-infected cell apoptosis // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0006983 // ER overload response // not recorded /// 0006983 // ER overload response // inferred from sequence or structural similarity /// 0006983 // ER overload response // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from electronic annotation /// 0007029 // endoplasmic reticulum organization // inferred from electronic annotation /// 0007029 // endoplasmic reticulum organization // not recorded /// 0007595 // lactation // inferred from electronic annotation /// 0007595 // lactation // not recorded /// 0009967 // positive regulation of signal transduction // inferred from electronic annotation /// 0009967 // positive regulation of signal transduction // not recorded /// 0017148 // negative regulation of translation // not recorded /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0019217 // regulation of fatty acid metabolic process // inferred from electronic annotation /// 0019217 // regulation of fatty acid metabolic process // not recorded /// 0019722 // calcium-mediated signaling // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // not recorded /// 0030073 // insulin secretion // inferred from electronic annotation /// 0030073 // insulin secretion // not recorded /// 0030282 // bone mineralization // inferred from electronic annotation /// 0030282 // bone mineralization // not recorded /// 0030968 // endoplasmic reticulum unfolded protein response // not recorded /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from sequence or structural similarity /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0031016 // pancreas development // not recorded /// 0031016 // pancreas development // inferred from electronic annotation /// 0031018 // endocrine pancreas development // not recorded /// 0031018 // endocrine pancreas development // inferred from sequence or structural similarity /// 0031018 // endocrine pancreas development // inferred from electronic annotation /// 0031642 // negative regulation of myelination // inferred from electronic annotation /// 0031642 // negative regulation of myelination // not recorded /// 0032055 // negative regulation of translation in response to stress // inferred from direct assay /// 0032057 // negative regulation of translational initiation in response to stress // traceable author statement /// 0032092 // positive regulation of protein binding // inferred from electronic annotation /// 0032092 // positive regulation of protein binding // not recorded /// 0032933 // SREBP-mediated signaling pathway // inferred from electronic annotation /// 0032933 // SREBP-mediated signaling pathway // not recorded /// 0034976 // response to endoplasmic reticulum stress // not recorded /// 0034976 // response to endoplasmic reticulum stress // inferred from electronic annotation /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045444 // fat cell differentiation // not recorded /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from sequence or structural similarity /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0048009 // insulin-like growth factor receptor signaling pathway // not recorded /// 0051260 // protein homooligomerization // not recorded /// 0051260 // protein homooligomerization // inferred from sequence or structural similarity /// 0051260 // protein homooligomerization // inferred from electronic annotation 0005623 // cell // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004694 // eukaryotic translation initiation factor 2alpha kinase activity // inferred from direct assay /// 0004694 // eukaryotic translation initiation factor 2alpha kinase activity // inferred from mutant phenotype /// 0004694 // eukaryotic translation initiation factor 2alpha kinase activity // not recorded /// 0004694 // eukaryotic translation initiation factor 2alpha kinase activity // inferred from sequence or structural similarity /// 0004694 // eukaryotic translation initiation factor 2alpha kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1368327_at NM_134405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134405.1 /DB_XREF=gi:19705532 /GEN=Ccc6 /FEA=FLmRNA /CNT=9 /TID=Rn.24166.1 /TIER=FL+Stack /STK=6 /UG=Rn.24166 /LL=171443 /DEF=Rattus norvegicus cation-chloride cotransporter 6 (Ccc6), mRNA. /PROD=cation-chloride cotransporter 6 /FL=gb:AB023645.1 gb:NM_134405.1 NM_134405 solute carrier family 12 (potassium/chloride transporters), member 9 Slc12a9 171443 NM_134405 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1368328_at NM_013089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013089.1 /DB_XREF=gi:6981001 /GEN=Gys2 /FEA=FLmRNA /CNT=9 /TID=Rn.2906.1 /TIER=FL+Stack /STK=6 /UG=Rn.2906 /LL=25623 /DEF=Rattus norvegicus Glycogen synthase 2 (liver) (Gys2), mRNA. /PROD=glycogen synthase 2 (liver) /FL=gb:J05446.1 gb:AF346902.1 gb:NM_013089.1 NM_013089 glycogen synthase 2 Gys2 25623 NM_013089 0005977 // glycogen metabolic process // inferred from direct assay /// 0005978 // glycogen biosynthetic process // inferred from direct assay /// 0005978 // glycogen biosynthetic process // not recorded /// 0005978 // glycogen biosynthetic process // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005856 // cytoskeleton // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay /// 0030864 // cortical actin cytoskeleton // inferred from direct assay /// 0043265 // ectoplasm // inferred from direct assay 0004373 // glycogen (starch) synthase activity // inferred from direct assay /// 0004373 // glycogen (starch) synthase activity // not recorded /// 0004373 // glycogen (starch) synthase activity // inferred from electronic annotation /// 0005536 // glucose binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1368329_at NM_017224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017224.1 /DB_XREF=gi:8393885 /GEN=Slc22a6 /FEA=FLmRNA /CNT=9 /TID=Rn.11113.1 /TIER=FL+Stack /STK=6 /UG=Rn.11113 /LL=29509 /DEF=Rattus norvegicus solute carrier family 22 (organic anion transporter), member 6 (Slc22a6), mRNA. /PROD=organic cationic transporter-like 1 /FL=gb:NM_017224.1 gb:AB004559.1 gb:AF008221.1 NM_017224 solute carrier family 22 (organic anion transporter), member 6 Slc22a6 29509 NM_017224 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006820 // anion transport // inferred from electronic annotation /// 0006820 // anion transport // not recorded /// 0015711 // organic anion transport // not recorded /// 0015711 // organic anion transport // inferred from direct assay /// 0031427 // response to methotrexate // inferred from expression pattern /// 0034220 // ion transmembrane transport // not recorded /// 0043252 // sodium-independent organic anion transport // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0043234 // protein complex // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0005452 // inorganic anion exchanger activity // inferred from electronic annotation /// 0005452 // inorganic anion exchanger activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008514 // organic anion transmembrane transporter activity // not recorded /// 0008514 // organic anion transmembrane transporter activity // inferred from direct assay /// 0008514 // organic anion transmembrane transporter activity // inferred from electronic annotation /// 0015075 // ion transmembrane transporter activity // inferred from electronic annotation /// 0015347 // sodium-independent organic anion transmembrane transporter activity // inferred from direct assay 1368330_at NM_053720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053720.1 /DB_XREF=gi:16758535 /GEN=Ded /FEA=FLmRNA /CNT=9 /TID=Rn.15500.1 /TIER=FL+Stack /STK=6 /UG=Rn.15500 /LL=114512 /DEF=Rattus norvegicus apoptosis antagonizing transcription factor (Ded), mRNA. /PROD=apoptosis antagonizing transcription factor /FL=gb:NM_053720.1 NM_053720 apoptosis antagonizing transcription factor Aatf 114512 NM_053720 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0007346 // regulation of mitotic cell cycle // inferred from electronic annotation /// 0007346 // regulation of mitotic cell cycle // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0010671 // negative regulation of oxygen and reactive oxygen species metabolic process // not recorded /// 0010671 // negative regulation of oxygen and reactive oxygen species metabolic process // inferred from electronic annotation /// 0032929 // negative regulation of superoxide anion generation // inferred from electronic annotation /// 0032929 // negative regulation of superoxide anion generation // not recorded /// 0040016 // embryonic cleavage // inferred from electronic annotation /// 0040016 // embryonic cleavage // not recorded /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0042254 // ribosome biogenesis // not recorded /// 0042985 // negative regulation of amyloid precursor protein biosynthetic process // inferred from electronic annotation /// 0042985 // negative regulation of amyloid precursor protein biosynthetic process // not recorded /// 0045941 // positive regulation of transcription // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from mutant phenotype /// 0043522 // leucine zipper domain binding // inferred from electronic annotation /// 0043522 // leucine zipper domain binding // not recorded /// 0048156 // tau protein binding // inferred from physical interaction 1368331_at NM_031023 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031023.1 /DB_XREF=gi:13591933 /GEN=Ctbs /FEA=FLmRNA /CNT=9 /TID=Rn.11199.1 /TIER=FL+Stack /STK=6 /UG=Rn.11199 /LL=81652 /DEF=Rattus norvegicus di-N-acetylchitobiase (Ctbs), mRNA. /PROD=di-N-acetylchitobiase /FL=gb:M95768.1 gb:NM_031023.1 NM_031023 chitobiase, di-N-acetyl- Ctbs 81652 NM_031023 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006032 // chitin catabolic process // inferred from direct assay /// 0006032 // chitin catabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009313 // oligosaccharide catabolic process // inferred from direct assay 0005764 // lysosome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004568 // chitinase activity // inferred from direct assay /// 0004568 // chitinase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // traceable author statement /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation 1368332_at NM_133624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133624.1 /DB_XREF=gi:19424349 /GEN=Gbp2 /FEA=FLmRNA /CNT=8 /TID=Rn.25736.1 /TIER=FL+Stack /STK=6 /UG=Rn.25736 /LL=171164 /DEF=Rattus norvegicus guanylate binding protein 2, interferon-inducible (Gbp2), mRNA. /PROD=guanylate binding protein 2,interferon-inducible /FL=gb:NM_133624.1 gb:M80367.1 NM_133624 guanylate binding protein 2 Gbp2 171164 NM_133624 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1368333_at NM_017082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017082.1 /DB_XREF=gi:8394508 /GEN=Umod /FEA=FLmRNA /CNT=8 /TID=Rn.31982.1 /TIER=FL+Stack /STK=6 /UG=Rn.31982 /LL=25128 /DEF=Rattus norvegicus Urmodulin (Tamm-Horsfall protein) (Umod), mRNA. /PROD=urmodulin (Tamm-Horsfall protein) /FL=gb:M63510.1 gb:NM_017082.1 NM_017082 uromodulin Umod 25128 NM_017082 0007588 // excretion // inferred from electronic annotation /// 0007588 // excretion // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0048878 // chemical homeostasis // inferred from electronic annotation /// 0048878 // chemical homeostasis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // traceable author statement /// 0016324 // apical plasma membrane // not recorded /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045177 // apical part of cell // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1368334_at NM_053403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053403.1 /DB_XREF=gi:16758131 /GEN=Grb7 /FEA=FLmRNA /CNT=8 /TID=Rn.28109.1 /TIER=FL+Stack /STK=6 /UG=Rn.28109 /LL=84427 /DEF=Rattus norvegicus growth factor receptor binding protein GRB7 (Grb7), mRNA. /PROD=growth factor receptor binding protein GRB7 /FL=gb:AF190121.1 gb:NM_053403.1 NM_053403 growth factor receptor bound protein 7 Grb7 84427 NM_053403 0007165 // signal transduction // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368335_at NM_012738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012738.1 /DB_XREF=gi:6978514 /GEN=Apoa1 /FEA=FLmRNA /CNT=8 /TID=Rn.10308.1 /TIER=FL+Stack /STK=6 /UG=Rn.10308 /LL=25081 /DEF=Rattus norvegicus Apolipoprotein A-I (Apoa1), mRNA. /PROD=apolipoprotein A-I /FL=gb:M00001.1 gb:NM_012738.1 NM_012738 apolipoprotein A-I Apoa1 25081 NM_012738 0001932 // regulation of protein phosphorylation // not recorded /// 0001935 // endothelial cell proliferation // not recorded /// 0002740 // negative regulation of cytokine secretion involved in immune response // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // not recorded /// 0006656 // phosphatidylcholine biosynthetic process // not recorded /// 0006695 // cholesterol biosynthetic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0008104 // protein localization // not recorded /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0008211 // glucocorticoid metabolic process // not recorded /// 0010873 // positive regulation of cholesterol esterification // not recorded /// 0010903 // negative regulation of very-low-density lipoprotein particle remodeling // not recorded /// 0014012 // peripheral nervous system axon regeneration // inferred from expression pattern /// 0015914 // phospholipid transport // inferred from direct assay /// 0019915 // lipid storage // not recorded /// 0030300 // regulation of intestinal cholesterol absorption // not recorded /// 0030301 // cholesterol transport // inferred from direct assay /// 0030301 // cholesterol transport // not recorded /// 0030325 // adrenal gland development // not recorded /// 0031100 // organ regeneration // inferred from direct assay /// 0031103 // axon regeneration // not recorded /// 0032488 // Cdc42 protein signal transduction // not recorded /// 0033344 // cholesterol efflux // not recorded /// 0033700 // phospholipid efflux // not recorded /// 0034380 // high-density lipoprotein particle assembly // not recorded /// 0042157 // lipoprotein metabolic process // inferred from electronic annotation /// 0042158 // lipoprotein biosynthetic process // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042632 // cholesterol homeostasis // not recorded /// 0043534 // blood vessel endothelial cell migration // not recorded /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0043691 // reverse cholesterol transport // not recorded /// 0050713 // negative regulation of interleukin-1 beta secretion // not recorded /// 0050821 // protein stabilization // not recorded /// 0051345 // positive regulation of hydrolase activity // not recorded /// 0051346 // negative regulation of hydrolase activity // not recorded /// 0051347 // positive regulation of transferase activity // not recorded /// 0060192 // negative regulation of lipase activity // inferred from direct assay /// 0070508 // cholesterol import // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // not recorded /// 0005886 // plasma membrane // not recorded /// 0030139 // endocytic vesicle // not recorded /// 0030141 // stored secretory granule // not recorded /// 0031410 // cytoplasmic vesicle // not recorded /// 0034361 // very-low-density lipoprotein particle // not recorded /// 0034364 // high-density lipoprotein particle // inferred from electronic annotation /// 0034364 // high-density lipoprotein particle // not recorded /// 0034366 // spherical high-density lipoprotein particle // not recorded 0001540 // beta-amyloid binding // not recorded /// 0005319 // lipid transporter activity // not recorded /// 0005515 // protein binding // not recorded /// 0005543 // phospholipid binding // not recorded /// 0005548 // phospholipid transporter activity // inferred from direct assay /// 0008035 // high-density lipoprotein binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0008289 // lipid binding // not recorded /// 0015485 // cholesterol binding // not recorded /// 0017127 // cholesterol transporter activity // inferred from direct assay /// 0017127 // cholesterol transporter activity // not recorded /// 0019899 // enzyme binding // not recorded /// 0034190 // apolipoprotein receptor binding // not recorded /// 0034191 // apolipoprotein A-I receptor binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0055102 // lipase inhibitor activity // inferred from direct assay /// 0060228 // phosphatidylcholine-sterol O-acyltransferase activator activity // not recorded /// 0070653 // high-density lipoprotein receptor binding // not recorded 1368336_at NM_017126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017126.1 /DB_XREF=gi:8393354 /GEN=Fdx1 /FEA=FLmRNA /CNT=8 /TID=Rn.6946.1 /TIER=FL+Stack /STK=6 /UG=Rn.6946 /LL=29189 /DEF=Rattus norvegicus ferredoxin 1 (Fdx1), mRNA. /PROD=ferredoxin 1 /FL=gb:NM_017126.1 gb:D50436.1 NM_017126 ferredoxin 1 Fdx1 29189 NM_017126 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0009055 // electron carrier activity // inferred from direct assay /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation 1368337_at NM_012794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012794.1 /DB_XREF=gi:6980959 /GEN=Glycam1 /FEA=FLmRNA /CNT=8 /TID=Rn.10939.1 /TIER=FL+Stack /STK=6 /UG=Rn.10939 /LL=25258 /DEF=Rattus norvegicus Glycosylation dependent cell adhesion molecule 1 (Glycam1), mRNA. /PROD=glycosylation dependent cell adhesion molecule1 /FL=gb:NM_012794.1 gb:L08100.1 NM_012794 glycosylation dependent cell adhesion molecule 1 Glycam1 25258 NM_012794 0007155 // cell adhesion // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0043199 // sulfate binding // not recorded /// 0050839 // cell adhesion molecule binding // not recorded 1368338_at NM_053983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053983.1 /DB_XREF=gi:16758883 /GEN=Cd52 /FEA=FLmRNA /CNT=8 /TID=Rn.34155.1 /TIER=FL+Stack /STK=6 /UG=Rn.34155 /LL=117054 /DEF=Rattus norvegicus CD52 antigen (Cd52), mRNA. /PROD=CD52 antigen /FL=gb:NM_053983.1 NM_053983 CD52 antigen Cd52 117054 NM_053983 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 1368339_at NM_012521 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012521.1 /DB_XREF=gi:6978608 /GEN=Calb3 /FEA=FLmRNA /CNT=8 /TID=Rn.9974.1 /TIER=FL+Stack /STK=6 /UG=Rn.9974 /LL=24249 /DEF=Rattus norvegicus Calcium-binding protein, intestinal, vitamin D-dependent (9-kDa CaBP) (Calb3), mRNA. /PROD=calcium-binding protein, intestinal, vitaminD-dependent (9-kDa CaBP) /FL=gb:J02954.1 gb:NM_012521.1 NM_012521 S100 calcium binding protein G S100g 24249 NM_012521 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded 0005499 // vitamin D binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1368340_at NM_134417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134417.1 /DB_XREF=gi:19705554 /GEN=Ipmk /FEA=FLmRNA /CNT=23 /TID=Rn.15187.1 /TIER=FL+Stack /STK=6 /UG=Rn.15187 /LL=171458 /DEF=Rattus norvegicus inositol polyphosphate multikinase (Ipmk), mRNA. /PROD=inositol polyphosphate multikinase /FL=gb:NM_134417.1 gb:AY014898.1 NM_134417 inositol polyphosphate multikinase Ipmk 171458 NM_134417 0001841 // neural tube formation // not recorded /// 0046853 // inositol and derivative phosphorylation // not recorded 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000824 // inositol tetrakisphosphate 3-kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008440 // inositol trisphosphate 3-kinase activity // inferred from electronic annotation /// 0008440 // inositol trisphosphate 3-kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368341_at M13961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M13961.1 /DB_XREF=gi:206275 /FEA=FLmRNA /CNT=14 /TID=Rn.9346.1 /TIER=FL /STK=2 /UG=Rn.9346 /LL=29240 /UG_GENE=Polb /UG_TITLE=DNA polymerase beta /DEF=Rat DNA polymerase beta mRNA, complete cds. /FL=gb:J02776.1 gb:U38801.1 gb:M13961.1 gb:NM_017141.1 M13961 polymerase (DNA directed), beta Polb 29240 NM_017141 0006260 // DNA replication // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006284 // base-excision repair // not recorded /// 0006284 // base-excision repair // inferred from sequence or structural similarity /// 0006284 // base-excision repair // traceable author statement /// 0006284 // base-excision repair // inferred from electronic annotation /// 0006287 // base-excision repair, gap-filling // inferred from electronic annotation /// 0006287 // base-excision repair, gap-filling // not recorded /// 0006290 // pyrimidine dimer repair // inferred from direct assay /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008219 // cell death // not recorded /// 0045471 // response to ethanol // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005874 // microtubule // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // not recorded /// 0003887 // DNA-directed DNA polymerase activity // inferred from sequence or structural similarity /// 0003887 // DNA-directed DNA polymerase activity // traceable author statement /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0016829 // lyase activity // not recorded /// 0016829 // lyase activity // inferred from sequence or structural similarity /// 0016829 // lyase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0046872 // metal ion binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1368342_at NM_031544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031544.1 /DB_XREF=gi:13928735 /GEN=Ampd3 /FEA=FLmRNA /CNT=13 /TID=Rn.11106.1 /TIER=FL+Stack /STK=6 /UG=Rn.11106 /LL=25095 /DEF=Rattus norvegicus Adenosine monophosphate deaminase 3 (Ampd3), mRNA. /PROD=adenosine monophosphate deaminase 3 /FL=gb:U90888.1 gb:NM_031544.1 NM_031544 adenosine monophosphate deaminase 3 Ampd3 25095 NM_031544 0006144 // purine base metabolic process // inferred from electronic annotation /// 0006196 // AMP catabolic process // traceable author statement /// 0009117 // nucleotide metabolic process // inferred from electronic annotation /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // inferred from electronic annotation 0003876 // AMP deaminase activity // inferred from direct assay /// 0003876 // AMP deaminase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016814 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines // inferred from electronic annotation /// 0019239 // deaminase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368343_at NM_053949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053949.1 /DB_XREF=gi:16758827 /GEN=Kcnh2 /FEA=FLmRNA /CNT=11 /TID=Rn.10970.1 /TIER=FL+Stack /STK=6 /UG=Rn.10970 /LL=117018 /DEF=Rattus norvegicus potassium voltage-gated channel, subfamily H (eag-related), member 2 (Kcnh2), mRNA. /PROD=potassium voltage-gated channel, subfamily H(eag-related), member 2 /FL=gb:NM_053949.1 NM_053949 potassium voltage-gated channel, subfamily H (eag-related), member 2 Kcnh2 117018 NM_053949 0000160 // two-component signal transduction system (phosphorelay) // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from direct assay /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0042391 // regulation of membrane potential // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0005635 // nuclear envelope // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000155 // two-component sensor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from direct assay /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from direct assay /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from direct assay /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from direct assay /// 0005267 // potassium channel activity // inferred from electronic annotation 1368344_at NM_017007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017007.1 /DB_XREF=gi:8393405 /GEN=Gad1 /FEA=FLmRNA /CNT=11 /TID=Rn.10370.1 /TIER=FL+Stack /STK=6 /UG=Rn.10370 /LL=24379 /DEF=Rattus norvegicus Glutamate decarboxylase 1 (brain) (Gad1), mRNA. /PROD=glutamate decarboxylase 1 (brain) /FL=gb:NM_017007.1 gb:M34445.1 gb:M76177.1 NM_017007 glutamate decarboxylase 1 Gad1 24379 NM_017007 0019752 // carboxylic acid metabolic process // inferred from electronic annotation /// 0042136 // neurotransmitter biosynthetic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005622 // intracellular // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004351 // glutamate decarboxylase activity // inferred from direct assay /// 0004351 // glutamate decarboxylase activity // not recorded /// 0004351 // glutamate decarboxylase activity // inferred from sequence or structural similarity /// 0004351 // glutamate decarboxylase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1368345_at NM_017204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017204.1 /DB_XREF=gi:8850228 /GEN=Mtap6 /FEA=FLmRNA /CNT=10 /TID=Rn.37490.1 /TIER=FL+Stack /STK=6 /UG=Rn.37490 /LL=29457 /DEF=Rattus norvegicus microtubule-associated protein 6 (Mtap6), mRNA. /PROD=microtubule-associated protein 6 /FL=gb:NM_017204.1 NM_017204 microtubule-associated protein 6 Map6 29457 NM_017204 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0005516 // calmodulin binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded 1368346_at NM_133553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133553.1 /DB_XREF=gi:19424227 /GEN=B3galt4 /FEA=FLmRNA /CNT=10 /TID=Rn.24575.1 /TIER=FL+Stack /STK=6 /UG=Rn.24575 /LL=171079 /DEF=Rattus norvegicus UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4 (B3galt4), mRNA. /PROD=UDP-Gal:betaGlcNAc beta1,3-galactosyltransferase, polypeptide 4 /FL=gb:NM_133553.1 gb:AB003478.1 NM_133553 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4 B3galt4 171079 NM_133553 0006486 // protein glycosylation // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008378 // galactosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0047915 // ganglioside galactosyltransferase activity // inferred from electronic annotation 1368347_at NM_021760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021760.1 /DB_XREF=gi:11120709 /GEN=Col5a3 /FEA=FLmRNA /CNT=9 /TID=Rn.38654.1 /TIER=FL+Stack /STK=6 /UG=Rn.38654 /LL=60379 /DEF=Rattus norvegicus procollagen, type V, alpha 3 (Col5a3), mRNA. /PROD=procollagen, type V, alpha 3 /FL=gb:AF272661.1 gb:NM_021760.1 NM_021760 collagen, type V, alpha 3 Col5a3 60379 NM_021760 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded 0005581 // collagen // inferred from electronic annotation /// 0005588 // collagen type V // not recorded /// 0005588 // collagen type V // traceable author statement /// 0005588 // collagen type V // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded 1368348_at NM_013034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013034.1 /DB_XREF=gi:6981553 /GEN=Slc6a4 /FEA=FLmRNA /CNT=9 /TID=Rn.1663.1 /TIER=FL+Stack /STK=6 /UG=Rn.1663 /LL=25553 /DEF=Rattus norvegicus Solute carrier family 6 (neurotransmitter transporter, serotonin), member 4 (5-hydroxytryptamine (serotonin) transporter) (Slc6a4), mRNA. /PROD=solute carrier family 6 (neurotransmittertransporter, serotonin), member 4 (5-hydroxytryptamine(serotonin) transporter) /FL=gb:M79450.1 gb:NM_013034.1 NM_013034 solute carrier family 6 (neurotransmitter transporter, serotonin), member 4 Slc6a4 25553 NM_013034 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006837 // serotonin transport // inferred from direct assay /// 0006837 // serotonin transport // inferred from mutant phenotype /// 0006837 // serotonin transport // not recorded /// 0006837 // serotonin transport // traceable author statement /// 0006837 // serotonin transport // inferred from electronic annotation /// 0007626 // locomotory behavior // non-traceable author statement /// 0009636 // response to toxin // inferred from electronic annotation /// 0009636 // response to toxin // not recorded /// 0010628 // positive regulation of gene expression // not recorded /// 0015844 // monoamine transport // not recorded /// 0015844 // monoamine transport // inferred from electronic annotation /// 0021794 // thalamus development // inferred from electronic annotation /// 0021794 // thalamus development // not recorded /// 0045787 // positive regulation of cell cycle // not recorded /// 0051259 // protein oligomerization // inferred from direct assay /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051610 // serotonin uptake // inferred from direct assay /// 0051610 // serotonin uptake // inferred from mutant phenotype /// 0051610 // serotonin uptake // not recorded /// 0051610 // serotonin uptake // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from direct assay /// 0012505 // endomembrane system // not recorded /// 0012505 // endomembrane system // non-traceable author statement /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from mutant phenotype /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from electronic annotation 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0005335 // serotonin:sodium symporter activity // not recorded /// 0005335 // serotonin:sodium symporter activity // inferred from sequence or structural similarity /// 0005335 // serotonin:sodium symporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008504 // monoamine transmembrane transporter activity // not recorded /// 0008504 // monoamine transmembrane transporter activity // inferred from electronic annotation /// 0015222 // serotonin transmembrane transporter activity // inferred from direct assay /// 0015222 // serotonin transmembrane transporter activity // inferred from mutant phenotype /// 0015222 // serotonin transmembrane transporter activity // not recorded /// 0015222 // serotonin transmembrane transporter activity // inferred from sequence or structural similarity /// 0015222 // serotonin transmembrane transporter activity // traceable author statement /// 0015222 // serotonin transmembrane transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0017022 // myosin binding // inferred from physical interaction /// 0017075 // syntaxin-1 binding // inferred from physical interaction /// 0017137 // Rab GTPase binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // not recorded /// 0019811 // cocaine binding // inferred from mutant phenotype /// 0042803 // protein homodimerization activity // inferred from mutant phenotype /// 0050998 // nitric-oxide synthase binding // inferred from electronic annotation /// 0050998 // nitric-oxide synthase binding // not recorded /// 0051015 // actin filament binding // inferred from direct assay 1368349_at NM_022603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022603.1 /DB_XREF=gi:12018271 /GEN=Fgfbp1 /FEA=FLmRNA /CNT=9 /TID=Rn.6346.1 /TIER=FL+Stack /STK=6 /UG=Rn.6346 /LL=64535 /DEF=Rattus norvegicus growth factor binding protein-1 (Fgfbp1), mRNA. /PROD=growth factor binding protein-1 /FL=gb:NM_022603.1 gb:AF142758.1 NM_022603 fibroblast growth factor binding protein 1 Fgfbp1 64535 NM_022603 0007267 // cell-cell signaling // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0045743 // positive regulation of fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0045743 // positive regulation of fibroblast growth factor receptor signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // not recorded /// 0019838 // growth factor binding // inferred from electronic annotation 1368350_at NM_013080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013080.1 /DB_XREF=gi:6981447 /GEN=Ptprz1 /FEA=FLmRNA /CNT=8 /TID=Rn.10088.1 /TIER=FL+Stack /STK=6 /UG=Rn.10088 /LL=25613 /DEF=Rattus norvegicus Protein tyrosine phosphatase, receptor-type, zeta polypeptide (Ptprz1), mRNA. /PROD=protein tyrosine phosphatase, receptor-type,zeta polypeptide /FL=gb:NM_013080.1 gb:U09357.1 NM_013080 protein tyrosine phosphatase, receptor-type, Z polypeptide 1 Ptprz1 25613 NM_001170685 /// NM_013080 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1368351_at NM_017247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017247.1 /DB_XREF=gi:8394241 /GEN=Scn10a /FEA=FLmRNA /CNT=8 /TID=Rn.10246.1 /TIER=FL+Stack /STK=6 /UG=Rn.10246 /LL=29571 /DEF=Rattus norvegicus sodium channel, type X, alpha polypeptide (Scn10a), mRNA. /PROD=sodium channel, type X, alpha polypeptide /FL=gb:NM_017247.1 NM_017247 sodium channel, voltage-gated, type X, alpha subunit Scn10a 29571 NM_017247 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // not recorded /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0001518 // voltage-gated sodium channel complex // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0044299 // C-fiber // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005248 // voltage-gated sodium channel activity // inferred from direct assay /// 0005248 // voltage-gated sodium channel activity // not recorded /// 0005248 // voltage-gated sodium channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1368352_at NM_012700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012700.1 /DB_XREF=gi:6981599 /GEN=Stx2 /FEA=FLmRNA /CNT=8 /TID=Rn.9944.1 /TIER=FL+Stack /STK=6 /UG=Rn.9944 /LL=24923 /DEF=Rattus norvegicus Syntaxin 2 (Stx2), mRNA. /PROD=syntaxin 2 /FL=gb:NM_012700.1 gb:M95735.1 NM_012700 syntaxin 1B Stx1b 24923 NM_012700 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0015031 // protein transport // inferred from mutant phenotype /// 0016192 // vesicle-mediated transport // inferred from mutant phenotype /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0017157 // regulation of exocytosis // inferred from mutant phenotype 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction 1368353_at NM_017009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017009.1 /DB_XREF=gi:8393430 /GEN=Gfap /FEA=FLmRNA /CNT=8 /TID=Rn.9689.1 /TIER=FL+Stack /STK=6 /UG=Rn.9689 /LL=24387 /DEF=Rattus norvegicus Glial fibrillary acidic protein (Gfap), mRNA. /PROD=glial fibrillary acidic protein /FL=gb:U03700.1 gb:NM_017009.1 NM_017009 glial fibrillary acidic protein Gfap 24387 NM_017009 0009611 // response to wounding // inferred from direct assay /// 0045103 // intermediate filament-based process // inferred from electronic annotation /// 0045103 // intermediate filament-based process // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005882 // intermediate filament // not recorded /// 0005882 // intermediate filament // non-traceable author statement /// 0005882 // intermediate filament // traceable author statement /// 0005882 // intermediate filament // inferred from electronic annotation /// 0044464 // cell part // not recorded /// 0044464 // cell part // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005198 // structural molecule activity // not recorded /// 0005200 // structural constituent of cytoskeleton // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368354_at NM_053293 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053293.1 /DB_XREF=gi:16757987 /GEN=Gstt1 /FEA=FLmRNA /CNT=8 /TID=Rn.11122.1 /TIER=FL+Stack /STK=6 /UG=Rn.11122 /LL=25260 /DEF=Rattus norvegicus Glutathione S-transferase 1 (theta) (Gstt1), mRNA. /PROD=glutathione S-transferase 1 (theta) /FL=gb:NM_053293.1 NM_053293 glutathione S-transferase theta 1 Gstt1 25260 NM_053293 0006749 // glutathione metabolic process // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern 0005625 // soluble fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded 0004364 // glutathione transferase activity // inferred from direct assay /// 0004364 // glutathione transferase activity // not recorded /// 0004364 // glutathione transferase activity // inferred from electronic annotation /// 0004602 // glutathione peroxidase activity // inferred from direct assay /// 0004602 // glutathione peroxidase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation 1368355_at NM_017083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017083.1 /DB_XREF=gi:8393816 /GEN=Myo5b /FEA=FLmRNA /CNT=7 /TID=Rn.10640.1 /TIER=FL+Stack /STK=6 /UG=Rn.10640 /LL=25132 /DEF=Rattus norvegicus myosin Vb (Myo5b), mRNA. /PROD=myosin Vb /FL=gb:NM_017083.1 gb:U60416.1 NM_017083 myosin Vb Myo5b 25132 NM_017083 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0032880 // regulation of protein localization // inferred from mutant phenotype 0016459 // myosin complex // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from mutant phenotype /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction 1368356_a_at NM_030836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030836.1 /DB_XREF=gi:13540637 /GEN=APPILS /FEA=FLmRNA /CNT=7 /TID=Rn.22516.1 /TIER=FL+Stack /STK=6 /UG=Rn.22516 /LL=80897 /DEF=Rattus norvegicus leucyl-specific aminopeptidase PILS (APPILS), mRNA. /PROD=leucyl-specific aminopeptidase PILS /FL=gb:AF148324.1 gb:NM_030836.1 NM_030836 endoplasmic reticulum aminopeptidase 1 Erap1 80897 NM_030836 0006508 // proteolysis // inferred from mutant phenotype /// 0006508 // proteolysis // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0006509 // membrane protein ectodomain proteolysis // inferred from sequence or structural similarity /// 0008152 // metabolic process // not recorded /// 0009617 // response to bacterium // not recorded /// 0019882 // antigen processing and presentation // traceable author statement /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004177 // aminopeptidase activity // inferred from mutant phenotype /// 0004177 // aminopeptidase activity // not recorded /// 0004177 // aminopeptidase activity // inferred from sequence or structural similarity /// 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005138 // interleukin-6 receptor binding // not recorded /// 0005138 // interleukin-6 receptor binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008235 // metalloexopeptidase activity // not recorded /// 0008235 // metalloexopeptidase activity // inferred from sequence or structural similarity /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from mutant phenotype /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368357_at NM_053630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053630.1 /DB_XREF=gi:16758435 /GEN=Kcnh4 /FEA=FLmRNA /CNT=7 /TID=Rn.30035.1 /TIER=FL+Stack /STK=6 /UG=Rn.30035 /LL=114032 /DEF=Rattus norvegicus potassium voltage-gated channel, subfamily H (eag-related), member 4 (Kcnh4), mRNA. /PROD=potassium voltage-gated channel, subfamily H(eag-related), member 4 /FL=gb:AB022699.1 gb:NM_053630.1 NM_053630 potassium voltage-gated channel, subfamily H (eag-related), member 4 Kcnh4 114032 NM_053630 0000160 // two-component signal transduction system (phosphorelay) // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000155 // two-component sensor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation 1368358_a_at NM_053594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053594.1 /DB_XREF=gi:16758375 /GEN=Ptprr /FEA=FLmRNA /CNT=7 /TID=Rn.6277.1 /TIER=FL+Stack /STK=6 /UG=Rn.6277 /LL=94202 /DEF=Rattus norvegicus protein tyrosine phosphatase, receptor type, R (Ptprr), mRNA. /PROD=protein tyrosine phosphatase, receptor type, R /FL=gb:D38292.1 gb:NM_053594.1 gb:U14914.1 NM_053594 protein tyrosine phosphatase, receptor type, R Ptprr 94202 NM_001113390 /// NM_053594 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from sequence or structural similarity /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0007399 // nervous system development // inferred from expression pattern /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // traceable author statement /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded 1368359_a_at NM_030997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030997.1 /DB_XREF=gi:13591863 /GEN=Vgf /FEA=FLmRNA /CNT=7 /TID=Rn.9704.1 /TIER=FL+Stack /STK=6 /UG=Rn.9704 /LL=29461 /DEF=Rattus norvegicus VGF nerve growth factor inducible (Vgf), mRNA. /PROD=VGF nerve growth factor inducible /FL=gb:NM_030997.1 gb:M60525.1 NM_030997 VGF nerve growth factor inducible Vgf 29461 NM_030997 0001541 // ovarian follicle development // inferred from electronic annotation /// 0001541 // ovarian follicle development // not recorded /// 0002021 // response to dietary excess // inferred from electronic annotation /// 0002021 // response to dietary excess // not recorded /// 0006091 // generation of precursor metabolites and energy // inferred from electronic annotation /// 0006091 // generation of precursor metabolites and energy // not recorded /// 0009409 // response to cold // inferred from electronic annotation /// 0009409 // response to cold // not recorded /// 0019953 // sexual reproduction // inferred from electronic annotation /// 0019953 // sexual reproduction // not recorded /// 0030073 // insulin secretion // inferred from electronic annotation /// 0030073 // insulin secretion // not recorded /// 0030182 // neuron differentiation // traceable author statement /// 0032868 // response to insulin stimulus // inferred from electronic annotation /// 0032868 // response to insulin stimulus // not recorded /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042593 // glucose homeostasis // not recorded /// 0043084 // penile erection // inferred from direct assay /// 0048168 // regulation of neuronal synaptic plasticity // inferred from direct assay /// 0051591 // response to cAMP // inferred from electronic annotation /// 0051591 // response to cAMP // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0030133 // transport vesicle // inferred from electronic annotation /// 0030667 // secretory granule membrane // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0005184 // neuropeptide hormone activity // inferred from electronic annotation /// 0005184 // neuropeptide hormone activity // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation 1368360_at NM_053491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053491.1 /DB_XREF=gi:16758215 /GEN=Plg /FEA=FLmRNA /CNT=7 /TID=Rn.20178.1 /TIER=FL+Stack /STK=6 /UG=Rn.20178 /LL=85253 /DEF=Rattus norvegicus plasminogen (Plg), mRNA. /PROD=plasminogen /FL=gb:NM_053491.1 NM_053491 plasminogen Plg 85253 NM_053491 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0007596 // blood coagulation // inferred from electronic annotation /// 0007596 // blood coagulation // not recorded /// 0010812 // negative regulation of cell-substrate adhesion // inferred from electronic annotation /// 0010812 // negative regulation of cell-substrate adhesion // not recorded /// 0022617 // extracellular matrix disassembly // inferred from electronic annotation /// 0022617 // extracellular matrix disassembly // not recorded /// 0042246 // tissue regeneration // inferred from electronic annotation /// 0042246 // tissue regeneration // not recorded /// 0042730 // fibrinolysis // inferred from electronic annotation /// 0045445 // myoblast differentiation // inferred from electronic annotation /// 0045445 // myoblast differentiation // not recorded /// 0046716 // muscle cell homeostasis // inferred from electronic annotation /// 0046716 // muscle cell homeostasis // not recorded /// 0048771 // tissue remodeling // inferred from electronic annotation /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from direct assay /// 0051918 // negative regulation of fibrinolysis // inferred from electronic annotation /// 0051918 // negative regulation of fibrinolysis // not recorded /// 0051919 // positive regulation of fibrinolysis // inferred from electronic annotation /// 0051919 // positive regulation of fibrinolysis // not recorded /// 0060707 // trophoblast giant cell differentiation // inferred from electronic annotation /// 0060707 // trophoblast giant cell differentiation // not recorded /// 0060716 // labyrinthine layer blood vessel development // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005792 // microsome // inferred from direct assay /// 0031232 // extrinsic to external side of plasma membrane // inferred from electronic annotation /// 0031232 // extrinsic to external side of plasma membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004175 // endopeptidase activity // inferred from direct assay /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0034185 // apolipoprotein binding // inferred from electronic annotation /// 0034185 // apolipoprotein binding // not recorded /// 0043498 // cell surface binding // inferred from electronic annotation /// 0043498 // cell surface binding // not recorded 1368361_a_at NM_053990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053990.1 /DB_XREF=gi:16758895 /GEN=Ptpn2 /FEA=FLmRNA /CNT=7 /TID=Rn.33497.1 /TIER=FL+Stack /STK=6 /UG=Rn.33497 /LL=117063 /DEF=Rattus norvegicus protein tyrosine phosphatase, non-receptor type 2 (Ptpn2), mRNA. /PROD=protein tyrosine phosphatase, non-receptor type2 /FL=gb:NM_053990.1 NM_053990 protein tyrosine phosphatase, non-receptor type 2 Ptpn2 117063 NM_053990 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004726 // non-membrane spanning protein tyrosine phosphatase activity // inferred from direct assay /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1368362_a_at M16347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M16347.1 /DB_XREF=gi:206648 /FEA=FLmRNA /CNT=1 /TID=Rn.9834.3 /TIER=FL /STK=1 /UG=Rn.9834 /LL=29403 /UG_GENE=Asgr2 /UG_TITLE=asialoglycoprotein receptor 2 /DEF=Rat asialoglycoprotein receptor (RHL2) mRNA, complete cds. /FL=gb:M16347.1 M16347 asialoglycoprotein receptor 2 Asgr2 29403 NM_017189 0006897 // endocytosis // inferred from electronic annotation /// 0009100 // glycoprotein metabolic process // inferred from electronic annotation /// 0009100 // glycoprotein metabolic process // not recorded /// 0030282 // bone mineralization // inferred from expression pattern /// 0031647 // regulation of protein stability // inferred from electronic annotation /// 0031647 // regulation of protein stability // not recorded /// 0055088 // lipid homeostasis // inferred from electronic annotation /// 0055088 // lipid homeostasis // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from electronic annotation 1368363_at NM_053394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053394.1 /DB_XREF=gi:16758121 /GEN=Klf5 /FEA=FLmRNA /CNT=7 /TID=Rn.17478.1 /TIER=FL+Stack /STK=6 /UG=Rn.17478 /LL=84410 /DEF=Rattus norvegicus Kruppel-like factor 5 (intestinal) (Klf5), mRNA. /PROD=Kruppel-like factor 5 (intestinal) /FL=gb:NM_053394.1 gb:AF182101.1 NM_053394 Kruppel-like factor 5 Klf5 84410 NM_053394 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from expression pattern /// 0030033 // microvillus assembly // not recorded /// 0030033 // microvillus assembly // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1368364_at NM_031536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031536.1 /DB_XREF=gi:13928723 /GEN=Mcsp /FEA=FLmRNA /CNT=7 /TID=Rn.10492.1 /TIER=FL+Stack /STK=6 /UG=Rn.10492 /LL=24899 /DEF=Rattus norvegicus Mitochondrial capsule selenoprotein (Mcsp), mRNA. /PROD=mitochondrial capsule selenoprotein /FL=gb:U48702.1 gb:NM_031536.1 NM_031536 sperm mitochondria-associated cysteine-rich protein Smcp 24899 NM_031536 0007338 // single fertilization // inferred from electronic annotation /// 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation /// 0007339 // binding of sperm to zona pellucida // not recorded /// 0007341 // penetration of zona pellucida // inferred from electronic annotation /// 0007341 // penetration of zona pellucida // not recorded /// 0030317 // sperm motility // not recorded /// 0030317 // sperm motility // inferred from sequence or structural similarity /// 0030317 // sperm motility // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 1368365_at NM_031731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031731.1 /DB_XREF=gi:13929027 /GEN=Aldh3a2 /FEA=FLmRNA /CNT=16 /TID=Rn.9113.1 /TIER=FL+Stack /STK=6 /UG=Rn.9113 /LL=65183 /DEF=Rattus norvegicus alcohol dehydrogenase family 3, subfamily A2 (Aldh3a2), mRNA. /PROD=alcohol dehydrogenase family 3, subfamily A2 /FL=gb:NM_031731.1 gb:M73714.1 NM_031731 aldehyde dehydrogenase 3 family, member A2 Aldh3a2 65183 NM_031731 0000302 // response to reactive oxygen species // inferred from direct assay /// 0006081 // cellular aldehyde metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0046292 // formaldehyde metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // non-traceable author statement /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042406 // extrinsic to endoplasmic reticulum membrane // inferred from direct assay 0004028 // 3-chloroallyl aldehyde dehydrogenase activity // inferred from direct assay /// 0004029 // aldehyde dehydrogenase (NAD) activity // inferred from electronic annotation /// 0004030 // aldehyde dehydrogenase [NAD(P)+] activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1368366_at NM_021668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021668.1 /DB_XREF=gi:11067384 /GEN=Cml2 /FEA=FLmRNA /CNT=9 /TID=Rn.42037.1 /TIER=FL+Stack /STK=6 /UG=Rn.42037 /LL=59300 /DEF=Rattus norvegicus putative N-acetyltransferase Camello 2 (Cml2), mRNA. /PROD=putative N-acetyltransferase Camello 2 /FL=gb:AF185569.1 gb:NM_021668.1 NM_021668 camello-like 1 Cml1 59300 NM_021668 0001702 // gastrulation with mouth forming second // non-traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007369 // gastrulation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0008080 // N-acetyltransferase activity // non-traceable author statement /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368367_at NM_054005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_054005.1 /DB_XREF=gi:16758921 /GEN=Itmap1 /FEA=FLmRNA /CNT=8 /TID=Rn.10825.1 /TIER=FL+Stack /STK=6 /UG=Rn.10825 /LL=117179 /DEF=Rattus norvegicus integral membrane-associated protein 1 (Itmap1), mRNA. /PROD=integral membrane-associated protein 1 /FL=gb:NM_054005.1 gb:AF167170.1 gb:AF022147.1 NM_054005 CUB and zona pellucida-like domains 1 Cuzd1 117179 NM_054005 0007565 // female pregnancy // non-traceable author statement /// 0007565 // female pregnancy // traceable author statement /// 0009755 // hormone-mediated signaling pathway // inferred from direct assay /// 0032023 // trypsinogen activation // inferred from sequence or structural similarity 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030658 // transport vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042588 // zymogen granule // not recorded /// 0042588 // zymogen granule // inferred from electronic annotation /// 0042589 // zymogen granule membrane // not recorded /// 0042589 // zymogen granule membrane // inferred from sequence or structural similarity /// 0042589 // zymogen granule membrane // inferred from electronic annotation 1368368_a_at NM_032616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032616.1 /DB_XREF=gi:14249139 /GEN=Lisch7 /FEA=FLmRNA /CNT=8 /TID=Rn.48696.1 /TIER=FL+Stack /STK=6 /UG=Rn.48696 /LL=64355 /DEF=Rattus norvegicus liver-specific bHLH-Zip transcription factor (Lisch7), mRNA. /PROD=liver-specific bHLH-Zip transcription factor /FL=gb:AF119667.1 gb:NM_032616.1 NM_032616 lipolysis stimulated lipoprotein receptor Lsr 64355 NM_032616 0001889 // liver development // not recorded /// 0001889 // liver development // inferred from sequence or structural similarity /// 0001889 // liver development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0009790 // embryo development // inferred from sequence or structural similarity /// 0009790 // embryo development // inferred from electronic annotation /// 0019216 // regulation of lipid metabolic process // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0034361 // very-low-density lipoprotein particle // inferred from electronic annotation /// 0034362 // low-density lipoprotein particle // inferred from electronic annotation /// 0042627 // chylomicron // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005504 // fatty acid binding // traceable author statement /// 0017129 // triglyceride binding // traceable author statement 1368369_at NM_013007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013007.1 /DB_XREF=gi:6981377 /GEN=Pnoc /FEA=FLmRNA /CNT=8 /TID=Rn.11194.1 /TIER=FL+Stack /STK=6 /UG=Rn.11194 /LL=25516 /DEF=Rattus norvegicus Prepronociceptin (neuropeptide nociceptin) (N23K) (Pnoc), mRNA. /PROD=prepronociceptin (neuropeptide nociceptin)(N23K) /FL=gb:U48262.1 gb:NM_013007.1 NM_013007 prepronociceptin Pnoc 25516 NM_013007 0007218 // neuropeptide signaling pathway // inferred from direct assay /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from direct assay /// 0007268 // synaptic transmission // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded 0001515 // opioid peptide activity // inferred from electronic annotation 1368370_at NM_019285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019285.1 /DB_XREF=gi:9506372 /GEN=Adcy4 /FEA=FLmRNA /CNT=7 /TID=Rn.1904.1 /TIER=FL+Stack /STK=6 /UG=Rn.1904 /LL=54223 /DEF=Rattus norvegicus Adenylyl cyclase 4 (Adcy4), mRNA. /PROD=Adenylyl cyclase 4 /FL=gb:NM_019285.1 gb:M80633.1 NM_019285 adenylate cyclase 4 Adcy4 54223 NM_019285 0006171 // cAMP biosynthetic process // inferred from direct assay /// 0006171 // cAMP biosynthetic process // inferred from electronic annotation /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // not recorded /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0034199 // activation of protein kinase A activity // not recorded 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004016 // adenylate cyclase activity // inferred from direct assay /// 0004016 // adenylate cyclase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1368371_at NM_032073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032073.1 /DB_XREF=gi:14091761 /GEN=Kcnq1 /FEA=FLmRNA /CNT=7 /TID=Rn.9779.1 /TIER=FL+Stack /STK=6 /UG=Rn.9779 /LL=84020 /DEF=Rattus norvegicus potassium voltage-gated channel, KQT-like subfamily, member 1 (Kcnq1), mRNA. /PROD=potassium voltage-gated channel, KQT-likesubfamily, member 1 /FL=gb:NM_032073.1 NM_032073 potassium voltage-gated channel, KQT-like subfamily, member 1 Kcnq1 84020 NM_032073 0006349 // regulation of gene expression by genetic imprinting // inferred from electronic annotation /// 0006349 // regulation of gene expression by genetic imprinting // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from direct assay /// 0006813 // potassium ion transport // not recorded /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0016458 // gene silencing // inferred from electronic annotation /// 0016458 // gene silencing // not recorded /// 0042221 // response to chemical stimulus // inferred from direct assay /// 0042391 // regulation of membrane potential // inferred from direct assay /// 0046676 // negative regulation of insulin secretion // inferred from direct assay /// 0051899 // membrane depolarization // inferred from electronic annotation /// 0051899 // membrane depolarization // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0008076 // voltage-gated potassium channel complex // inferred from direct assay /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from direct assay /// 0042589 // zymogen granule membrane // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005251 // delayed rectifier potassium channel activity // inferred from electronic annotation /// 0005251 // delayed rectifier potassium channel activity // not recorded /// 0005267 // potassium channel activity // inferred from direct assay /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0015271 // outward rectifier potassium channel activity // inferred from direct assay 1368372_at NM_012661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012661.1 /DB_XREF=gi:6981597 /GEN=Sts /FEA=FLmRNA /CNT=7 /TID=Rn.6312.1 /TIER=FL+Stack /STK=6 /UG=Rn.6312 /LL=24800 /DEF=Rattus norvegicus Steroid sulfatase (Sts), mRNA. /PROD=steroid sulfatase /FL=gb:U37138.1 gb:NM_012661.1 NM_012661 steroid sulfatase Sts 24800 NM_012661 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from electronic annotation /// 0007611 // learning or memory // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0009268 // response to pH // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0043588 // skin development // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from direct assay 0000299 // integral to membrane of membrane fraction // inferred from direct assay /// 0005635 // nuclear envelope // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004773 // steryl-sulfatase activity // inferred from direct assay /// 0004773 // steryl-sulfatase activity // inferred from electronic annotation /// 0008484 // sulfuric ester hydrolase activity // not recorded /// 0008484 // sulfuric ester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368373_at NM_019343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019343.1 /DB_XREF=gi:9507046 /GEN=Rgs7 /FEA=FLmRNA /CNT=7 /TID=Rn.21234.1 /TIER=FL+Stack /STK=6 /UG=Rn.21234 /LL=54296 /DEF=Rattus norvegicus regulator of G-protein signaling 7 (Rgs7), mRNA. /PROD=regulator of G-protein signaling 7 /FL=gb:NM_019343.1 gb:AB024398.1 NM_019343 regulator of G-protein signaling 7 Rgs7 54296 NM_019343 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // traceable author statement /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1368374_a_at NM_053840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053840.1 /DB_XREF=gi:16758695 /GEN=M33821 /FEA=FLmRNA /CNT=7 /TID=Rn.10010.1 /TIER=FL+Stack /STK=6 /UG=Rn.10010 /LL=116568 /DEF=Rattus norvegicus gamma-glutamyl transpeptidase (M33821), mRNA. /PROD=gamma-glutamyl transpeptidase /FL=gb:NM_053840.1 gb:M33821.1 NM_053840 gamma-glutamyltransferase 1 Ggt1 116568 NM_053840 0006750 // glutathione biosynthetic process // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007568 // aging // inferred from expression pattern /// 0031179 // peptide modification // inferred from direct assay /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0034599 // cellular response to oxidative stress // inferred from expression pattern /// 0034612 // response to tumor necrosis factor // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003840 // gamma-glutamyltransferase activity // inferred from direct assay /// 0003840 // gamma-glutamyltransferase activity // non-traceable author statement /// 0003840 // gamma-glutamyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368375_a_at AF015718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF015718.1 /DB_XREF=gi:2738729 /GEN=IL-15 /FEA=FLmRNA /CNT=1 /TID=Rn.2490.2 /TIER=FL /STK=1 /UG=Rn.2490 /LL=25670 /DEF=Rattus norvegicus interleukin-15 alternative-splice product (IL-15) mRNA, complete cds. /PROD=interleukin-15 alternative-splice product /FL=gb:AF015718.1 AF015718 interleukin 15 Il15 25670 NM_013129 0001525 // angiogenesis // traceable author statement /// 0001866 // NK T cell proliferation // inferred from electronic annotation /// 0001866 // NK T cell proliferation // not recorded /// 0006954 // inflammatory response // inferred from expression pattern /// 0006955 // immune response // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0045062 // extrathymic T cell selection // inferred from electronic annotation /// 0045062 // extrathymic T cell selection // not recorded /// 0045580 // regulation of T cell differentiation // inferred from electronic annotation /// 0045580 // regulation of T cell differentiation // not recorded /// 0048535 // lymph node development // inferred from electronic annotation /// 0048535 // lymph node development // not recorded /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0050691 // regulation of defense response to virus by host // inferred from electronic annotation /// 0050691 // regulation of defense response to virus by host // not recorded /// 0050778 // positive regulation of immune response // inferred from electronic annotation /// 0050778 // positive regulation of immune response // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005126 // cytokine receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368376_at NM_057133 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057133.1 /DB_XREF=gi:16930820 /GEN=Nr0b2 /FEA=FLmRNA /CNT=7 /TID=Rn.10712.1 /TIER=FL+Stack /STK=6 /UG=Rn.10712 /LL=117274 /DEF=Rattus norvegicus nuclear receptor subfamily 0, group B, member 2 (Nr0b2), mRNA. /PROD=nuclear receptor subfamily 0, group B, member 2 /FL=gb:D86580.1 gb:NM_057133.1 NM_057133 nuclear receptor subfamily 0, group B, member 2 Nr0b2 117274 NM_057133 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from mutant phenotype /// 0031100 // organ regeneration // inferred from expression pattern /// 0032024 // positive regulation of insulin secretion // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0016564 // transcription repressor activity // inferred from mutant phenotype /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0032403 // protein complex binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042974 // retinoic acid receptor binding // inferred from physical interaction /// 0042975 // peroxisome proliferator activated receptor binding // inferred from physical interaction /// 0046965 // retinoid X receptor binding // inferred from physical interaction /// 0046966 // thyroid hormone receptor binding // inferred from physical interaction 1368377_at NM_134332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134332.1 /DB_XREF=gi:19705438 /GEN=Gzmc /FEA=FLmRNA /CNT=7 /TID=Rn.10533.1 /TIER=FL+Stack /STK=6 /UG=Rn.10533 /LL=171290 /DEF=Rattus norvegicus granzyme C (Gzmc), mRNA. /PROD=granzyme C /FL=gb:NM_134332.1 gb:U57062.1 NM_134332 granzyme C Gzmc 171290 NM_134332 0006508 // proteolysis // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation 1368378_at NM_022547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022547.1 /DB_XREF=gi:11968143 /GEN=Fthfd /FEA=FLmRNA /CNT=6 /TID=Rn.2328.1 /TIER=FL+Stack /STK=6 /UG=Rn.2328 /LL=64392 /DEF=Rattus norvegicus 10-formyltetrahydrofolate dehydrogenase (Fthfd), mRNA. /PROD=10-formyltetrahydrofolate dehydrogenase /FL=gb:M59861.1 gb:NM_022547.1 NM_022547 aldehyde dehydrogenase 1 family, member L1 Aldh1l1 64392 NM_022547 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009258 // 10-formyltetrahydrofolate catabolic process // inferred from electronic annotation /// 0046654 // tetrahydrofolate biosynthetic process // traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // traceable author statement /// 0043234 // protein complex // inferred from direct assay 0000036 // acyl carrier activity // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004030 // aldehyde dehydrogenase [NAD(P)+] activity // inferred from direct assay /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016155 // formyltetrahydrofolate dehydrogenase activity // traceable author statement /// 0016155 // formyltetrahydrofolate dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016742 // hydroxymethyl-, formyl- and related transferase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0048037 // cofactor binding // inferred from electronic annotation 1368379_at NM_054001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_054001.1 /DB_XREF=gi:16758913 /GEN=Cd36l2 /FEA=FLmRNA /CNT=6 /TID=Rn.6293.1 /TIER=FL+Stack /STK=6 /UG=Rn.6293 /LL=117106 /DEF=Rattus norvegicus CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 2 (Cd36l2), mRNA. /PROD=CD36 antigen (collagen type I receptor,thrombospondin receptor)-like 2 /FL=gb:NM_054001.1 gb:M68965.1 NM_054001 scavenger receptor class B, member 2 Scarb2 117106 NM_054001 0007155 // cell adhesion // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // traceable author statement /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368380_at NM_019156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019156.1 /DB_XREF=gi:9507240 /GEN=Vtn /FEA=FLmRNA /CNT=6 /TID=Rn.9585.1 /TIER=FL+Stack /STK=6 /UG=Rn.9585 /LL=29169 /DEF=Rattus norvegicus vitronectin (Vtn), mRNA. /PROD=vitronectin /FL=gb:U44845.1 gb:NM_019156.1 NM_019156 vitronectin Vtn 29169 NM_019156 0006955 // immune response // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0010811 // positive regulation of cell-substrate adhesion // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // not recorded /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // not recorded /// 0014911 // positive regulation of smooth muscle cell migration // inferred from electronic annotation /// 0014911 // positive regulation of smooth muscle cell migration // not recorded /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0032092 // positive regulation of protein binding // inferred from electronic annotation /// 0032092 // positive regulation of protein binding // not recorded /// 0033627 // cell adhesion mediated by integrin // inferred from electronic annotation /// 0033627 // cell adhesion mediated by integrin // not recorded /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from electronic annotation /// 0048260 // positive regulation of receptor-mediated endocytosis // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030247 // polysaccharide binding // inferred from electronic annotation /// 0050840 // extracellular matrix binding // inferred from electronic annotation /// 0050840 // extracellular matrix binding // not recorded 1368381_at NM_134401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134401.1 /DB_XREF=gi:19705524 /GEN=W307 /FEA=FLmRNA /CNT=6 /TID=Rn.15989.1 /TIER=FL+Stack /STK=6 /UG=Rn.15989 /LL=171438 /DEF=Rattus norvegicus W307 protein (W307), mRNA. /PROD=W307 protein /FL=gb:U78304.1 gb:NM_134401.1 NM_134401 cartilage acidic protein 1 Crtac1 171438 NM_134401 0005509 // calcium ion binding // inferred from electronic annotation 1368382_at NM_053681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053681.1 /DB_XREF=gi:16758495 /GEN=S100a3 /FEA=FLmRNA /CNT=6 /TID=Rn.29233.1 /TIER=FL+Stack /STK=6 /UG=Rn.29233 /LL=114216 /DEF=Rattus norvegicus S100 calcium binding protein A3 (S100a3), mRNA. /PROD=S100 calcium binding protein A3 /FL=gb:AF140231.1 gb:NM_053681.1 NM_053681 S100 calcium binding protein A3 S100a3 114216 NM_053681 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1368383_at NM_022586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022586.1 /DB_XREF=gi:12018239 /GEN=Npff /FEA=FLmRNA /CNT=6 /TID=Rn.48705.1 /TIER=FL+Stack /STK=6 /UG=Rn.48705 /LL=60337 /DEF=Rattus norvegicus neuropeptide FF-amide peptide precursor (Npff), mRNA. /PROD=neuropeptide FF-amide peptide precursor /FL=gb:AF148700.1 gb:NM_022586.1 NM_022586 neuropeptide FF-amide peptide precursor Npff 60337 NM_022586 0002438 // acute inflammatory response to antigenic stimulus // inferred from expression pattern /// 0003254 // regulation of membrane depolarization // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0010459 // negative regulation of heart rate // inferred from direct assay /// 0021510 // spinal cord development // inferred from expression pattern /// 0030103 // vasopressin secretion // inferred from direct assay /// 0032099 // negative regulation of appetite // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0043278 // response to morphine // inferred from expression pattern /// 0045777 // positive regulation of blood pressure // inferred from direct assay /// 0046676 // negative regulation of insulin secretion // inferred from direct assay /// 0051930 // regulation of sensory perception of pain // inferred from direct assay /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from direct assay /// 0060135 // maternal process involved in female pregnancy // inferred from expression pattern /// 0070253 // somatostatin secretion // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0031982 // vesicle // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay 0001664 // G-protein-coupled receptor binding // inferred from direct assay /// 0005184 // neuropeptide hormone activity // inferred from direct assay /// 0005184 // neuropeptide hormone activity // inferred from electronic annotation 1368384_at NM_019175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019175.1 /DB_XREF=gi:9506996 /GEN=Klk6 /FEA=FLmRNA /CNT=7 /TID=Rn.10732.1 /TIER=FL+Stack /STK=6 /UG=Rn.10732 /LL=29245 /DEF=Rattus norvegicus kallikrein 6 (neurosin, zyme) (Klk6), mRNA. /PROD=kallikrein 6 (neurosin, zyme) /FL=gb:NM_019175.1 gb:AF016269.1 NM_019175 kallikrein related-peptidase 6 Klk6 29245 NM_019175 0006508 // proteolysis // inferred from electronic annotation /// 0010975 // regulation of neuron projection development // inferred from direct assay /// 0045745 // positive regulation of G-protein coupled receptor protein signaling pathway // not recorded 0005576 // extracellular region // not recorded /// 0005737 // cytoplasm // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1368385_a_at X62853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X62853.1 /DB_XREF=gi:55762 /GEN=ash /FEA=mRNA /CNT=1 /TID=Rn.3360.2 /TIER=ConsEnd /STK=0 /UG=Rn.3360 /LL=81504 /DEF=R.norvegicus ash mRNA. /PROD=ash protein X62853 growth factor receptor bound protein 2 Grb2 81504 NM_030846 0007165 // signal transduction // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0007265 // Ras protein signal transduction // traceable author statement /// 0007568 // aging // inferred from physical interaction /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0031623 // receptor internalization // inferred from electronic annotation /// 0031623 // receptor internalization // not recorded /// 0043408 // regulation of MAPKKK cascade // inferred from electronic annotation /// 0043408 // regulation of MAPKKK cascade // not recorded /// 0048646 // anatomical structure formation involved in morphogenesis // inferred from electronic annotation /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0060670 // branching involved in embryonic placenta morphogenesis // inferred from electronic annotation /// 0060670 // branching involved in embryonic placenta morphogenesis // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0012506 // vesicle membrane // inferred from electronic annotation /// 0012506 // vesicle membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0043234 // protein complex // inferred from direct assay 0001784 // phosphotyrosine binding // inferred from physical interaction /// 0005070 // SH3/SH2 adaptor activity // inferred from electronic annotation /// 0005070 // SH3/SH2 adaptor activity // not recorded /// 0005154 // epidermal growth factor receptor binding // not recorded /// 0005154 // epidermal growth factor receptor binding // inferred from sequence or structural similarity /// 0005154 // epidermal growth factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0019904 // protein domain specific binding // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0043560 // insulin receptor substrate binding // inferred from physical interaction /// 0043560 // insulin receptor substrate binding // not recorded /// 0043560 // insulin receptor substrate binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // inferred from physical interaction 1368386_at NM_030846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030846.1 /DB_XREF=gi:13540653 /GEN=Grb2 /FEA=FLmRNA /CNT=42 /TID=Rn.3360.1 /TIER=FL+Stack /STK=18 /UG=Rn.3360 /LL=81504 /DEF=Rattus norvegicus growth factor receptor bound protein 2 (Grb2), mRNA. /PROD=growth factor receptor bound protein 2 /FL=gb:D49848.1 gb:D49846.1 gb:NM_030846.1 NM_030846 growth factor receptor bound protein 2 Grb2 81504 NM_030846 0007165 // signal transduction // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0007265 // Ras protein signal transduction // traceable author statement /// 0007568 // aging // inferred from physical interaction /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0031623 // receptor internalization // inferred from electronic annotation /// 0031623 // receptor internalization // not recorded /// 0043408 // regulation of MAPKKK cascade // inferred from electronic annotation /// 0043408 // regulation of MAPKKK cascade // not recorded /// 0048646 // anatomical structure formation involved in morphogenesis // inferred from electronic annotation /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0060670 // branching involved in embryonic placenta morphogenesis // inferred from electronic annotation /// 0060670 // branching involved in embryonic placenta morphogenesis // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0012506 // vesicle membrane // inferred from electronic annotation /// 0012506 // vesicle membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0043234 // protein complex // inferred from direct assay 0001784 // phosphotyrosine binding // inferred from physical interaction /// 0005070 // SH3/SH2 adaptor activity // inferred from electronic annotation /// 0005070 // SH3/SH2 adaptor activity // not recorded /// 0005154 // epidermal growth factor receptor binding // not recorded /// 0005154 // epidermal growth factor receptor binding // inferred from sequence or structural similarity /// 0005154 // epidermal growth factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0019904 // protein domain specific binding // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0043560 // insulin receptor substrate binding // inferred from physical interaction /// 0043560 // insulin receptor substrate binding // not recorded /// 0043560 // insulin receptor substrate binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // inferred from physical interaction 1368387_at NM_053995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053995.1 /DB_XREF=gi:16758901 /GEN=Bdh /FEA=FLmRNA /CNT=18 /TID=Rn.36635.1 /TIER=FL /STK=5 /UG=Rn.36635 /LL=117099 /DEF=Rattus norvegicus 3-hydroxybutyrate dehydrogenase (heart, mitochondrial) (Bdh), mRNA. /PROD=3-hydroxybutyrate dehydrogenase (heart,mitochondrial) /FL=gb:M89902.1 gb:NM_053995.1 NM_053995 3-hydroxybutyrate dehydrogenase, type 1 Bdh1 117099 NM_053995 0001889 // liver development // inferred from expression pattern /// 0007420 // brain development // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0009636 // response to toxin // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042594 // response to starvation // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060416 // response to growth hormone stimulus // inferred from expression pattern /// 0060612 // adipose tissue development // inferred from expression pattern 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0003858 // 3-hydroxybutyrate dehydrogenase activity // inferred from direct assay /// 0003858 // 3-hydroxybutyrate dehydrogenase activity // not recorded /// 0003858 // 3-hydroxybutyrate dehydrogenase activity // traceable author statement /// 0003858 // 3-hydroxybutyrate dehydrogenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1368388_at AW532973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532973 /DB_XREF=gi:7175387 /DB_XREF=UI-R-BU0-amy-c-10-0-UI.s1 /CLONE=UI-R-BU0-amy-c-10-0-UI /FEA=FLmRNA /CNT=18 /TID=Rn.10726.1 /TIER=Stack /STK=9 /UG=Rn.10726 /LL=54267 /UG_GENE=Maf /UG_TITLE=v-maf musculoaponeurotic fibrosarcoma (avian) oncogene homolog (c-maf) /FL=gb:U56242.1 gb:NM_019318.1 AW532973 v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian) Maf 54267 NM_019318 0001816 // cytokine production // inferred from electronic annotation /// 0001816 // cytokine production // not recorded /// 0002088 // lens development in camera-type eye // not recorded /// 0002088 // lens development in camera-type eye // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006351 // transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // non-traceable author statement /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0032330 // regulation of chondrocyte differentiation // inferred from electronic annotation /// 0032330 // regulation of chondrocyte differentiation // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048468 // cell development // inferred from electronic annotation /// 0048468 // cell development // not recorded /// 0070306 // lens fiber cell differentiation // inferred from electronic annotation /// 0070306 // lens fiber cell differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from direct assay 1368389_at NM_031781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031781.1 /DB_XREF=gi:13929103 /GEN=Apba3 /FEA=FLmRNA /CNT=13 /TID=Rn.6924.1 /TIER=FL /STK=5 /UG=Rn.6924 /LL=83611 /DEF=Rattus norvegicus amyloid beta (A4) precursor protein-binding, family A, member 3 (X11-like 2) (Apba3), mRNA. /PROD=amyloid beta (A4) precursor protein-binding,family A, member 3 (X11-like 2) /FL=gb:NM_031781.1 gb:AF029109.1 NM_031781 amyloid beta (A4) precursor protein-binding, family A, member 3 Apba3 83611 NM_031781 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368390_at NM_022532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022532.1 /DB_XREF=gi:11968119 /GEN=Araf1 /FEA=FLmRNA /CNT=19 /TID=Rn.1714.1 /TIER=FL /STK=5 /UG=Rn.1714 /LL=64363 /DEF=Rattus norvegicus A-raf (Araf1), mRNA. /PROD=A-raf /FL=gb:NM_022532.1 NM_022532 v-raf murine sarcoma 3611 viral oncogene homolog Araf 64363 NM_001033663 /// NM_022532 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // traceable author statement /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005626 // insoluble fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004709 // MAP kinase kinase kinase activity // inferred from direct assay /// 0004709 // MAP kinase kinase kinase activity // traceable author statement /// 0005057 // receptor signaling protein activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368391_at NM_013111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013111.1 /DB_XREF=gi:6981555 /GEN=Slc7a1 /FEA=FLmRNA /CNT=18 /TID=Rn.9439.1 /TIER=FL /STK=5 /UG=Rn.9439 /LL=25648 /DEF=Rattus norvegicus Solute carrier family 7 member A1 (amino acid transporter cationic 1) (Slc7a1), mRNA. /PROD=solute carrier family 7 member A1 (amino acidtransporter cationic 1) /FL=gb:U70476.1 gb:D67087.1 gb:AB066224.1 gb:NM_013111.1 NM_013111 solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 Slc7a1 25648 NM_013111 0003333 // amino acid transmembrane transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded /// 0006865 // amino acid transport // inferred from electronic annotation /// 0015802 // basic amino acid transport // traceable author statement /// 0015807 // L-amino acid transport // not recorded /// 0015809 // arginine transport // inferred from mutant phenotype /// 0015809 // arginine transport // not recorded /// 0015809 // arginine transport // inferred from electronic annotation /// 0032006 // regulation of TOR signaling cascade // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015181 // arginine transmembrane transporter activity // inferred from direct assay /// 0015181 // arginine transmembrane transporter activity // not recorded /// 0015181 // arginine transmembrane transporter activity // inferred from electronic annotation /// 0015326 // cationic amino acid transmembrane transporter activity // traceable author statement 1368392_at BF420160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420160 /DB_XREF=gi:11408149 /DB_XREF=UI-R-BJ2-bpj-f-07-0-UI.s1 /CLONE=UI-R-BJ2-bpj-f-07-0-UI /FEA=FLmRNA /CNT=18 /TID=Rn.9439.1 /TIER=Stack /STK=7 /UG=Rn.9439 /LL=25648 /UG_GENE=Slc7a1 /UG_TITLE=Solute carrier family 7 member A1 (amino acid transporter cationic 1) /FL=gb:U70476.1 gb:D67087.1 gb:AB066224.1 gb:NM_013111.1 BF420160 solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 Slc7a1 25648 NM_013111 0003333 // amino acid transmembrane transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded /// 0006865 // amino acid transport // inferred from electronic annotation /// 0015802 // basic amino acid transport // traceable author statement /// 0015807 // L-amino acid transport // not recorded /// 0015809 // arginine transport // inferred from mutant phenotype /// 0015809 // arginine transport // not recorded /// 0015809 // arginine transport // inferred from electronic annotation /// 0032006 // regulation of TOR signaling cascade // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015181 // arginine transmembrane transporter activity // inferred from direct assay /// 0015181 // arginine transmembrane transporter activity // not recorded /// 0015181 // arginine transmembrane transporter activity // inferred from electronic annotation /// 0015326 // cationic amino acid transmembrane transporter activity // traceable author statement 1368393_at NM_053383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053383.1 /DB_XREF=gi:16758113 /GEN=Ly68 /FEA=FLmRNA /CNT=16 /TID=Rn.4129.1 /TIER=FL /STK=5 /UG=Rn.4129 /LL=84398 /DEF=Rattus norvegicus lymphocyte antigen 68 (Ly68), mRNA. /PROD=lymphocyte antigen 68 /FL=gb:AF136537.1 gb:NM_053383.1 gb:AF160978.1 NM_053383 CD93 molecule Cd93 84398 NM_053383 0007155 // cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0016337 // cell-cell adhesion // inferred from sequence or structural similarity 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded 0001849 // complement component C1q binding // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from electronic annotation 1368394_at AF140346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF140346.1 /DB_XREF=gi:7672422 /FEA=FLmRNA /CNT=13 /TID=Rn.10788.1 /TIER=FL /STK=5 /UG=Rn.10788 /LL=89803 /UG_GENE=Sfrp4 /DEF=Rattus norvegicus frizzled related protein mRNA, complete cds. /PROD=frizzled related protein /FL=gb:NM_053544.1 gb:AF140346.1 gb:AF012891.1 AF140346 secreted frizzled-related protein 4 Sfrp4 89803 NM_053544 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0016055 // Wnt receptor signaling pathway // traceable author statement /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0046329 // negative regulation of JNK cascade // inferred from direct assay /// 0046697 // decidualization // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0060056 // mammary gland involution // inferred from expression pattern /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0017147 // Wnt-protein binding // inferred from physical interaction /// 0017147 // Wnt-protein binding // not recorded /// 0017147 // Wnt-protein binding // inferred from electronic annotation 1368395_at NM_012774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012774.1 /DB_XREF=gi:6980975 /GEN=Gpc3 /FEA=FLmRNA /CNT=11 /TID=Rn.9717.1 /TIER=FL /STK=5 /UG=Rn.9717 /LL=25236 /DEF=Rattus norvegicus Glypican 3 (Gpc3), mRNA. /PROD=glypican 3 /FL=gb:M22400.1 gb:NM_012774.1 NM_012774 glypican 3 Gpc3 25236 NM_012774 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0010171 // body morphogenesis // inferred from electronic annotation /// 0010171 // body morphogenesis // not recorded /// 0030513 // positive regulation of BMP signaling pathway // inferred from electronic annotation /// 0030513 // positive regulation of BMP signaling pathway // not recorded /// 0045732 // positive regulation of protein catabolic process // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // not recorded /// 0045807 // positive regulation of endocytosis // inferred from electronic annotation /// 0045807 // positive regulation of endocytosis // not recorded /// 0045879 // negative regulation of smoothened signaling pathway // inferred from electronic annotation /// 0045879 // negative regulation of smoothened signaling pathway // not recorded /// 0045926 // negative regulation of growth // inferred from electronic annotation /// 0045926 // negative regulation of growth // not recorded /// 0072111 // cell proliferation involved in kidney development // not recorded /// 0072180 // mesonephric duct morphogenesis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0046658 // anchored to plasma membrane // inferred from electronic annotation /// 0046658 // anchored to plasma membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0043395 // heparan sulfate proteoglycan binding // inferred from electronic annotation /// 0060422 // peptidyl-dipeptidase inhibitor activity // not recorded /// 0060422 // peptidyl-dipeptidase inhibitor activity // inferred from sequence or structural similarity /// 0060422 // peptidyl-dipeptidase inhibitor activity // inferred from electronic annotation 1368396_at NM_016997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_016997.1 /DB_XREF=gi:8393095 /GEN=Cel /FEA=FLmRNA /CNT=11 /TID=Rn.11226.1 /TIER=FL /STK=5 /UG=Rn.11226 /LL=24254 /DEF=Rattus norvegicus Carboxyl ester lipase (Cel), mRNA. /PROD=carboxyl ester lipase /FL=gb:M15893.1 gb:NM_016997.1 NM_016997 carboxyl ester lipase Cel 24254 NM_016997 0006707 // cholesterol catabolic process // inferred from electronic annotation /// 0006707 // cholesterol catabolic process // not recorded /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0030157 // pancreatic juice secretion // inferred from electronic annotation /// 0030157 // pancreatic juice secretion // not recorded /// 0046514 // ceramide catabolic process // inferred from electronic annotation /// 0046514 // ceramide catabolic process // not recorded 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0042588 // zymogen granule // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0004091 // carboxylesterase activity // inferred from direct assay /// 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0004622 // lysophospholipase activity // inferred from direct assay /// 0004771 // sterol esterase activity // inferred from direct assay /// 0004771 // sterol esterase activity // not recorded /// 0004771 // sterol esterase activity // inferred from electronic annotation /// 0004806 // triglyceride lipase activity // inferred from direct assay /// 0004806 // triglyceride lipase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0043208 // glycosphingolipid binding // inferred from direct assay /// 0047372 // acylglycerol lipase activity // not recorded /// 0050253 // retinyl-palmitate esterase activity // inferred from direct assay 1368397_at NM_031980 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031980.1 /DB_XREF=gi:14010880 /GEN=Ugt2b12 /FEA=FLmRNA /CNT=11 /TID=Rn.3686.1 /TIER=FL /STK=5 /UG=Rn.3686 /LL=83808 /DEF=Rattus norvegicus UDP-glucuronosyltransferase (Ugt2b12), mRNA. /PROD=UDP-glucuronosyltransferase /FL=gb:U06273.1 gb:NM_031980.1 gb:U06274.1 NM_031980 UDP glucuronosyltransferase 2 family, polypeptide B36 Ugt2b36 83808 NM_001004271 0008152 // metabolic process // inferred from electronic annotation /// 0019439 // aromatic compound catabolic process // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001972 // retinoic acid binding // not recorded /// 0015020 // glucuronosyltransferase activity // inferred from direct assay /// 0015020 // glucuronosyltransferase activity // not recorded /// 0015020 // glucuronosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1368398_at NM_031601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031601.1 /DB_XREF=gi:13928819 /GEN=Cacna1g /FEA=FLmRNA /CNT=22 /TID=Rn.23698.1 /TIER=FL /STK=5 /UG=Rn.23698 /LL=29717 /DEF=Rattus norvegicus calcium channel, voltage-dependent, T type, alpha 1G subunit (Cacna1g), mRNA. /PROD=calcium channel, voltage-dependent, T type,alpha 1G subunit /FL=gb:AF290213.1 gb:NM_031601.1 NM_031601 calcium channel, voltage-dependent, T type, alpha 1H subunit Cacna1h 114862 NM_153814 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0008332 // low voltage-gated calcium channel activity // inferred from direct assay 1368399_a_at NM_031640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031640.1 /DB_XREF=gi:13928879 /GEN=Pgcp-pending /FEA=FLmRNA /CNT=15 /TID=Rn.17112.1 /TIER=FL /STK=5 /UG=Rn.17112 /LL=58952 /DEF=Rattus norvegicus plasma glutamate carboxypeptidase (Pgcp-pending), mRNA. /PROD=plasma glutamate carboxypeptidase /FL=gb:AF097723.1 gb:NM_031640.1 NM_031640 plasma glutamate carboxypeptidase Pgcp 58952 NM_031640 0006508 // proteolysis // inferred from electronic annotation /// 0042246 // tissue regeneration // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368400_at NM_053370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053370.1 /DB_XREF=gi:16758097 /GEN=Timm8a /FEA=FLmRNA /CNT=10 /TID=Rn.22930.1 /TIER=FL /STK=5 /UG=Rn.22930 /LL=84383 /DEF=Rattus norvegicus translocase of inner mitochondrial membrane 8 (yeast) homolog A (Timm8a), mRNA. /PROD=translocase of inner mitochondrial membrane 8(yeast) homolog A /FL=gb:AF150082.1 gb:NM_053370.1 NM_053370 translocase of inner mitochondrial membrane 8 homolog a1 (yeast) Timm8a1 84383 NM_053370 0006626 // protein targeting to mitochondrion // inferred from direct assay /// 0006626 // protein targeting to mitochondrion // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0045039 // protein import into mitochondrial inner membrane // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0042719 // mitochondrial intermembrane space protein transporter complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1368401_at M85035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M85035.1 /DB_XREF=gi:204381 /GEN=GLUR2 /FEA=FLmRNA /CNT=19 /TID=Rn.11364.1 /TIER=FL /STK=1 /UG=Rn.11364 /LL=29627 /DEF=Rat glutamate receptor subunit 2 (GLUR2) non-NMDA mRNA, complete cds. /PROD=glutamate receptor subunit 2 /FL=gb:M85035.1 gb:M38061.1 gb:NM_017261.1 gb:AF164344.1 M85035 glutamate receptor, ionotropic, AMPA 2 Gria2 29627 NM_001083811 /// NM_017261 0001919 // regulation of receptor recycling // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007268 // synaptic transmission // inferred from direct assay /// 0007268 // synaptic transmission // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0010226 // response to lithium ion // inferred from expression pattern /// 0031623 // receptor internalization // inferred from direct assay /// 0034220 // ion transmembrane transport // not recorded /// 0045184 // establishment of protein localization // inferred from mutant phenotype /// 0050806 // positive regulation of synaptic transmission // inferred from mutant phenotype /// 0051966 // regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype /// 0060992 // response to fungicide // inferred from expression pattern 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0008328 // ionotropic glutamate receptor complex // traceable author statement /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0030666 // endocytic vesicle membrane // not recorded /// 0030672 // synaptic vesicle membrane // inferred from direct assay /// 0032279 // asymmetric synapse // inferred from direct assay /// 0032281 // alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex // inferred from electronic annotation /// 0032281 // alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex // not recorded /// 0032839 // dendrite cytoplasm // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0043234 // protein complex // inferred from physical interaction /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from direct assay /// 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // not recorded /// 0004970 // ionotropic glutamate receptor activity // traceable author statement /// 0004971 // alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity // traceable author statement /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // not recorded /// 0005246 // calcium channel regulator activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0030165 // PDZ domain binding // inferred from direct assay /// 0030165 // PDZ domain binding // inferred from physical interaction 1368402_at NM_031026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031026.1 /DB_XREF=gi:13591937 /GEN=Dncli2 /FEA=FLmRNA /CNT=14 /TID=Rn.31981.1 /TIER=FL /STK=5 /UG=Rn.31981 /LL=81655 /DEF=Rattus norvegicus LIC-2 dynein light intermediate chain 5355 (Dncli2), mRNA. /PROD=LIC-2 dynein light intermediate chain 5355 /FL=gb:U15138.1 gb:NM_031026.1 NM_031026 dynein, cytoplasmic 1 light intermediate chain 2 Dync1li2 81655 NM_031026 0006810 // transport // inferred from electronic annotation /// 0007018 // microtubule-based movement // traceable author statement /// 0008090 // retrograde axon cargo transport // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005868 // cytoplasmic dynein complex // traceable author statement /// 0005874 // microtubule // inferred from electronic annotation /// 0030286 // dynein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation 1368403_at NM_031094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031094.1 /DB_XREF=gi:13592040 /GEN=Rb2 /FEA=FLmRNA /CNT=11 /TID=Rn.11020.1 /TIER=FL /STK=5 /UG=Rn.11020 /LL=81758 /DEF=Rattus norvegicus Retinoblastoma-related gene (Rb2), mRNA. /PROD=retinoblastoma-like 2 (p130) /FL=gb:D55627.1 gb:NM_031094.1 NM_031094 retinoblastoma-like 2 Rbl2 81758 NM_031094 0006350 // transcription // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0043550 // regulation of lipid kinase activity // inferred from electronic annotation /// 0043550 // regulation of lipid kinase activity // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1368404_at NM_031024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031024.1 /DB_XREF=gi:13591935 /GEN=Dbn1 /FEA=FLmRNA /CNT=11 /TID=Rn.11247.1 /TIER=FL /STK=5 /UG=Rn.11247 /LL=81653 /DEF=Rattus norvegicus drebrin 1 (Dbn1), mRNA. /PROD=drebrin 1 /FL=gb:NM_031024.1 NM_031024 drebrin 1 Dbn1 81653 NM_031024 0007015 // actin filament organization // not recorded /// 0007015 // actin filament organization // inferred from sequence or structural similarity /// 0007015 // actin filament organization // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from expression pattern /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0015629 // actin cytoskeleton // inferred from sequence or structural similarity /// 0015629 // actin cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005522 // profilin binding // inferred from direct assay 1368405_at NM_031093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031093.1 /DB_XREF=gi:13592038 /GEN=Rala /FEA=FLmRNA /CNT=9 /TID=Rn.2722.1 /TIER=FL /STK=5 /UG=Rn.2722 /LL=81757 /DEF=Rattus norvegicus -ral simian leukemia viral oncogene homolog A (ras related) (Rala), mRNA. /PROD=-ral simian leukemia viral oncogene homolog A(ras related) /FL=gb:NM_031093.1 gb:L19698.1 NM_031093 v-ral simian leukemia viral oncogene homolog A (ras related) Rala 81757 NM_031093 0000910 // cytokinesis // not recorded /// 0000910 // cytokinesis // inferred from sequence or structural similarity /// 0000910 // cytokinesis // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded /// 0017157 // regulation of exocytosis // not recorded /// 0017157 // regulation of exocytosis // inferred from sequence or structural similarity /// 0017157 // regulation of exocytosis // inferred from electronic annotation /// 0031532 // actin cytoskeleton reorganization // inferred from electronic annotation /// 0031532 // actin cytoskeleton reorganization // not recorded /// 0051301 // cell division // inferred from electronic annotation /// 0051491 // positive regulation of filopodium assembly // inferred from electronic annotation /// 0051491 // positive regulation of filopodium assembly // not recorded /// 0051665 // membrane raft localization // not recorded /// 0051665 // membrane raft localization // inferred from sequence or structural similarity /// 0051665 // membrane raft localization // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0030139 // endocytic vesicle // not recorded /// 0032154 // cleavage furrow // not recorded /// 0032154 // cleavage furrow // inferred from sequence or structural similarity /// 0032154 // cleavage furrow // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // non-traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation /// 0031755 // Edg-2 lysophosphatidic acid receptor binding // not recorded /// 0031755 // Edg-2 lysophosphatidic acid receptor binding // inferred from sequence or structural similarity /// 0031755 // Edg-2 lysophosphatidic acid receptor binding // inferred from electronic annotation 1368406_at NM_031558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031558.1 /DB_XREF=gi:13928753 /GEN=Star /FEA=FLmRNA /CNT=18 /TID=Rn.11399.1 /TIER=FL /STK=5 /UG=Rn.11399 /LL=25557 /DEF=Rattus norvegicus Steroidogenic acute regulatory protein (Star), mRNA. /PROD=steroidogenic acute regulatory protein /FL=gb:AB001349.1 gb:AF044081.1 gb:NM_031558.1 gb:AB006007.1 NM_031558 steroidogenic acute regulatory protein Star 25557 NM_031558 0006694 // steroid biosynthetic process // not recorded /// 0006694 // steroid biosynthetic process // traceable author statement /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006699 // bile acid biosynthetic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008211 // glucocorticoid metabolic process // inferred from electronic annotation /// 0008211 // glucocorticoid metabolic process // not recorded /// 0010288 // response to lead ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0044255 // cellular lipid metabolic process // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0048168 // regulation of neuronal synaptic plasticity // inferred from mutant phenotype /// 0050769 // positive regulation of neurogenesis // inferred from mutant phenotype /// 0050810 // regulation of steroid biosynthetic process // inferred from electronic annotation /// 0050810 // regulation of steroid biosynthetic process // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005758 // mitochondrial intermembrane space // inferred from direct assay /// 0005758 // mitochondrial intermembrane space // not recorded /// 0005829 // cytosol // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0015485 // cholesterol binding // inferred from electronic annotation /// 0017127 // cholesterol transporter activity // traceable author statement /// 0017127 // cholesterol transporter activity // inferred from electronic annotation 1368407_at NM_022605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022605.1 /DB_XREF=gi:12018275 /GEN=Hpa /FEA=FLmRNA /CNT=15 /TID=Rn.6392.1 /TIER=FL /STK=5 /UG=Rn.6392 /LL=64537 /DEF=Rattus norvegicus heparanase (Hpa), mRNA. /PROD=heparanase /FL=gb:NM_022605.1 gb:AF184967.1 NM_022605 heparanase Hpse 64537 NM_022605 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0030305 // heparanase activity // inferred from direct assay /// 0043169 // cation binding // inferred from electronic annotation 1368408_at NM_030829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030829.1 /DB_XREF=gi:13540623 /GEN=Gprk5 /FEA=FLmRNA /CNT=15 /TID=Rn.6500.1 /TIER=FL /STK=5 /UG=Rn.6500 /LL=59075 /DEF=Rattus norvegicus G protein-coupled receptor kinase 5 (Gprk5), mRNA. /PROD=G protein-coupled receptor kinase 5 /FL=gb:U34841.1 gb:NM_030829.1 NM_030829 G protein-coupled receptor kinase 5 Grk5 59075 NM_030829 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007217 // tachykinin receptor signaling pathway // inferred from electronic annotation /// 0007217 // tachykinin receptor signaling pathway // not recorded /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004703 // G-protein coupled receptor kinase activity // traceable author statement /// 0004703 // G-protein coupled receptor kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368409_at NM_012796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012796.1 /DB_XREF=gi:6980991 /GEN=Gstt2 /FEA=FLmRNA /CNT=12 /TID=Rn.10708.1 /TIER=FL /STK=5 /UG=Rn.10708 /LL=29487 /DEF=Rattus norvegicus glutathione S-transferase, theta 2 (Gstt2), mRNA. /PROD=Gstt2 /FL=gb:NM_012796.1 gb:D10026.1 NM_012796 glutathione S-transferase, theta 2 Gstt2 29487 NM_012796 0006749 // glutathione metabolic process // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004364 // glutathione transferase activity // inferred from direct assay /// 0004364 // glutathione transferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368410_at NM_012601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012601.1 /DB_XREF=gi:6981219 /GEN=Mpg /FEA=FLmRNA /CNT=12 /TID=Rn.11241.1 /TIER=FL /STK=5 /UG=Rn.11241 /LL=24561 /DEF=Rattus norvegicus N-methylpurine-DNA glycocylase (Mpg), mRNA. /PROD=n-methylpurine-DNA glycocylase /FL=gb:NM_012601.1 NM_012601 N-methylpurine-DNA glycosylase Mpg 24561 NM_012601 0006281 // DNA repair // inferred from electronic annotation /// 0006284 // base-excision repair // inferred from electronic annotation /// 0006284 // base-excision repair // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0045007 // depurination // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003905 // alkylbase DNA N-glycosylase activity // inferred from electronic annotation /// 0003905 // alkylbase DNA N-glycosylase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019104 // DNA N-glycosylase activity // not recorded /// 0019104 // DNA N-glycosylase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1368411_a_at X74211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X74211.1 /DB_XREF=gi:525271 /GEN=MAP2 /FEA=mRNA /CNT=1 /TID=Rn.10484.3 /TIER=ConsEnd /STK=0 /UG=Rn.10484 /LL=25595 /DEF=R.norvegicus mRNA for MAP2d protein. /PROD=MAP2d X74211 microtubule-associated protein 2 Map2 25595 NM_013066 0001578 // microtubule bundle formation // inferred from electronic annotation /// 0001578 // microtubule bundle formation // not recorded /// 0007026 // negative regulation of microtubule depolymerization // inferred from electronic annotation /// 0016358 // dendrite development // inferred from electronic annotation /// 0016358 // dendrite development // not recorded /// 0018107 // peptidyl-threonine phosphorylation // inferred from electronic annotation /// 0018107 // peptidyl-threonine phosphorylation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0019718 // rough microsome // inferred from direct assay /// 0019719 // smooth microsome // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030425 // dendrite // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043198 // dendritic shaft // inferred from electronic annotation /// 0043198 // dendritic shaft // not recorded /// 0043234 // protein complex // inferred from direct assay 0002166 // beta-dystroglycan binding // inferred from electronic annotation /// 0002166 // beta-dystroglycan binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation 1368412_a_at D45412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D45412.1 /DB_XREF=gi:644889 /FEA=mRNA /CNT=2 /TID=Rn.10163.2 /TIER=ConsEnd /STK=0 /UG=Rn.10163 /LL=50677 /UG_GENE=Ptpro /DEF=Rat mRNA for brain-enriched membrane-associated protein tyrosine phosphatase (BSM)-1, partial cds. /PROD=brain-enriched membrane-associated proteintyrosine phosphatase (BEM)-1 D45412 protein tyrosine phosphatase, receptor type, O Ptpro 50677 NM_017336 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007399 // nervous system development // non-traceable author statement /// 0016311 // dephosphorylation // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1368413_at NM_022935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022935.1 /DB_XREF=gi:12621095 /GEN=Abp1 /FEA=FLmRNA /CNT=11 /TID=Rn.54493.1 /TIER=FL /STK=5 /UG=Rn.54493 /LL=65029 /DEF=Rattus norvegicus amiloride binding protein 1 (Abp1), mRNA. /PROD=amiloride binding protein 1 /FL=gb:NM_022935.1 NM_022935 amiloride binding protein 1 (amine oxidase, copper-containing) Abp1 65029 NM_022935 0009308 // amine metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005923 // tight junction // inferred from direct assay 0005507 // copper ion binding // inferred from electronic annotation /// 0008131 // primary amine oxidase activity // inferred from electronic annotation /// 0008131 // primary amine oxidase activity // not recorded /// 0008144 // drug binding // inferred from direct assay /// 0008144 // drug binding // traceable author statement /// 0008201 // heparin binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048038 // quinone binding // inferred from electronic annotation 1368414_at NM_022590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022590.1 /DB_XREF=gi:12018247 /GEN=Sglt2 /FEA=FLmRNA /CNT=10 /TID=Rn.5887.1 /TIER=FL /STK=5 /UG=Rn.5887 /LL=64522 /DEF=Rattus norvegicus low affinity Na-dependent glucose transporter (SGLT2) (Sglt2), mRNA. /PROD=low affinity Na-dependent glucose transporter(SGLT2) /FL=gb:NM_022590.1 gb:U29881.1 NM_022590 solute carrier family 5 (sodium/glucose cotransporter), member 2 Slc5a2 64522 NM_022590 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0015758 // glucose transport // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0005412 // glucose:sodium symporter activity // inferred from direct assay /// 0015293 // symporter activity // inferred from electronic annotation 1368415_at NM_012604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012604.1 /DB_XREF=gi:6981233 /GEN=Myh3 /FEA=FLmRNA /CNT=9 /TID=Rn.9692.1 /TIER=FL /STK=5 /UG=Rn.9692 /LL=24583 /DEF=Rattus norvegicus Myosin, heavy polypeptide 3, skeletal muscle, embryonic (Myh3), mRNA. /PROD=myosin, heavy polypeptide 3, skeletal muscle,embryonic /FL=gb:NM_012604.1 NM_012604 myosin, heavy chain 2, skeletal muscle, adult /// myosin, heavy chain 3, skeletal muscle, embryonic Myh2 /// Myh3 24583 /// 691644 NM_001135157 /// NM_012604 0001778 // plasma membrane repair // not recorded /// 0006936 // muscle contraction // not recorded /// 0006936 // muscle contraction // inferred from electronic annotation /// 0006936 // muscle contraction // inferred from direct assay /// 0006941 // striated muscle contraction // traceable author statement /// 0014823 // response to activity // not recorded /// 0031034 // myosin filament assembly // traceable author statement 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005826 // actomyosin contractile ring // not recorded /// 0005859 // muscle myosin complex // inferred from direct assay /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0016459 // myosin complex // inferred from electronic annotation /// 0016459 // myosin complex // not recorded /// 0030016 // myofibril // inferred from electronic annotation /// 0030016 // myofibril // not recorded /// 0031672 // A band // not recorded /// 0032982 // myosin filament // inferred from electronic annotation /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from electronic annotation /// 0043292 // contractile fiber // not recorded 0000146 // microfilament motor activity // traceable author statement /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // traceable author statement 1368416_at NM_012587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012587.1 /DB_XREF=gi:6981065 /GEN=Ibsp /FEA=FLmRNA /CNT=9 /TID=Rn.9721.1 /TIER=FL /STK=5 /UG=Rn.9721 /LL=24477 /DEF=Rattus norvegicus Integrin-binding sialoprotein (bone sialoprotein II) (Ibsp), mRNA. /PROD=integrin-binding sialoprotein (bone sialoproteinII) /FL=gb:J04215.1 gb:NM_012587.1 gb:AB001383.1 NM_012587 integrin-binding sialoprotein Ibsp 24477 NM_012587 0001503 // ossification // traceable author statement /// 0001503 // ossification // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0031214 // biomineral tissue development // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0031988 // membrane-bounded vesicle // inferred from direct assay 1368417_at NM_019350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019350.1 /DB_XREF=gi:9507170 /GEN=Syt5 /FEA=FLmRNA /CNT=9 /TID=Rn.11030.1 /TIER=FL /STK=5 /UG=Rn.11030 /LL=54309 /DEF=Rattus norvegicus synaptotagmin 5 (Syt5), mRNA. /PROD=synaptotagmin 5 /FL=gb:NM_019350.1 gb:U26402.1 NM_019350 synaptotagmin V Syt5 54309 NM_019350 0006810 // transport // inferred from electronic annotation /// 0017156 // calcium ion-dependent exocytosis // non-traceable author statement 0005768 // endosome // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0055038 // recycling endosome membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368418_a_at AF202115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF202115.1 /DB_XREF=gi:6970045 /FEA=FLmRNA /CNT=4 /TID=Rn.32777.2 /TIER=FL /STK=1 /UG=Rn.32777 /LL=24268 /UG_GENE=Cp /DEF=Rattus norvegicus GPI-anchored ceruloplasmin mRNA, complete cds. /PROD=GPI-anchored ceruloplasmin /FL=gb:AF202115.1 AF202115 ceruloplasmin Cp 24268 NM_012532 0001889 // liver development // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0015679 // plasma membrane copper ion transport // traceable author statement /// 0030324 // lung development // inferred from expression pattern /// 0046688 // response to copper ion // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0046658 // anchored to plasma membrane // inferred from direct assay 0004322 // ferroxidase activity // not recorded /// 0004322 // ferroxidase activity // traceable author statement /// 0004322 // ferroxidase activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from direct assay /// 0005507 // copper ion binding // not recorded /// 0005507 // copper ion binding // traceable author statement /// 0005507 // copper ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051087 // chaperone binding // not recorded 1368419_at AF202115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF202115.1 /DB_XREF=gi:6970045 /FEA=FLmRNA /CNT=4 /TID=Rn.32777.2 /TIER=FL /STK=1 /UG=Rn.32777 /LL=24268 /UG_GENE=Cp /DEF=Rattus norvegicus GPI-anchored ceruloplasmin mRNA, complete cds. /PROD=GPI-anchored ceruloplasmin /FL=gb:AF202115.1 AF202115 ceruloplasmin Cp 24268 NM_012532 0001889 // liver development // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0015679 // plasma membrane copper ion transport // traceable author statement /// 0030324 // lung development // inferred from expression pattern /// 0046688 // response to copper ion // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0046658 // anchored to plasma membrane // inferred from direct assay 0004322 // ferroxidase activity // not recorded /// 0004322 // ferroxidase activity // traceable author statement /// 0004322 // ferroxidase activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from direct assay /// 0005507 // copper ion binding // not recorded /// 0005507 // copper ion binding // traceable author statement /// 0005507 // copper ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051087 // chaperone binding // not recorded 1368420_at NM_012532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012532.1 /DB_XREF=gi:6978694 /GEN=Cp /FEA=FLmRNA /CNT=8 /TID=Rn.32777.1 /TIER=FL /STK=5 /UG=Rn.32777 /LL=24268 /DEF=Rattus norvegicus Ceruloplasmin (ferroxidase) (Cp), mRNA. /PROD=ceruloplasmin (ferroxidase) /FL=gb:NM_012532.1 gb:L33869.1 NM_012532 ceruloplasmin Cp 24268 NM_012532 0001889 // liver development // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0015679 // plasma membrane copper ion transport // traceable author statement /// 0030324 // lung development // inferred from expression pattern /// 0046688 // response to copper ion // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0046658 // anchored to plasma membrane // inferred from direct assay 0004322 // ferroxidase activity // not recorded /// 0004322 // ferroxidase activity // traceable author statement /// 0004322 // ferroxidase activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from direct assay /// 0005507 // copper ion binding // not recorded /// 0005507 // copper ion binding // traceable author statement /// 0005507 // copper ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051087 // chaperone binding // not recorded 1368421_at NM_019253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019253.1 /DB_XREF=gi:9507008 /GEN=Ptpn5 /FEA=FLmRNA /CNT=8 /TID=Rn.10618.1 /TIER=FL /STK=5 /UG=Rn.10618 /LL=29644 /DEF=Rattus norvegicus protein tyrosine phosphatase, non-receptor type 5 (Ptpn5), mRNA. /PROD=protein tyrosine phosphatase, non-receptor type5 /FL=gb:NM_019253.1 NM_019253 protein tyrosine phosphatase, non-receptor type 5 Ptpn5 29644 NM_019253 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0001784 // phosphotyrosine binding // inferred from electronic annotation /// 0001784 // phosphotyrosine binding // not recorded /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1368422_at NM_017149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017149.1 /DB_XREF=gi:8393772 /GEN=Meox2 /FEA=FLmRNA /CNT=8 /TID=Rn.34890.1 /TIER=FL /STK=5 /UG=Rn.34890 /LL=29279 /DEF=Rattus norvegicus mesenchyme homeobox 2 (Meox2), mRNA. /PROD=mesenchyme homeobox 2 /FL=gb:NM_017149.1 NM_017149 mesenchyme homeobox 2 Meox2 29279 NM_017149 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0001757 // somite specification // inferred from electronic annotation /// 0001757 // somite specification // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded /// 0060173 // limb development // inferred from electronic annotation /// 0060173 // limb development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1368423_at NM_053333 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053333.1 /DB_XREF=gi:16758041 /GEN=Retnla /FEA=FLmRNA /CNT=8 /TID=Rn.12120.1 /TIER=FL /STK=5 /UG=Rn.12120 /LL=81712 /DEF=Rattus norvegicus resistin like alpha (Retnla), mRNA. /PROD=resistin like alpha /FL=gb:NM_053333.1 gb:AF323085.1 NM_053333 resistin like alpha Retnla 81712 NM_053333 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded 0005179 // hormone activity // inferred from electronic annotation 1368424_at NM_053355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053355.1 /DB_XREF=gi:16758077 /GEN=Ikbkb /FEA=FLmRNA /CNT=13 /TID=Rn.19222.1 /TIER=FL /STK=5 /UG=Rn.19222 /LL=84351 /DEF=Rattus norvegicus inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta (Ikbkb), mRNA. /PROD=inhibitor of kappa light polypeptide geneenhancer in B-cells, k /FL=gb:AF115282.1 gb:NM_053355.1 NM_053355 inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta Ikbkb 84351 NM_053355 0001782 // B cell homeostasis // inferred from electronic annotation /// 0001782 // B cell homeostasis // not recorded /// 0003009 // skeletal muscle contraction // inferred from expression pattern /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0007252 // I-kappaB phosphorylation // inferred from direct assay /// 0007252 // I-kappaB phosphorylation // inferred from mutant phenotype /// 0009636 // response to toxin // inferred from expression pattern /// 0016310 // phosphorylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043122 // regulation of I-kappaB kinase/NF-kappaB cascade // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0008385 // IkappaB kinase complex // inferred from physical interaction /// 0016020 // membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from mutant phenotype /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008384 // IkappaB kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1368425_at NM_080690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080690.1 /DB_XREF=gi:18093103 /GEN=Caskin1 /FEA=FLmRNA /CNT=11 /TID=Rn.48905.1 /TIER=FL /STK=5 /UG=Rn.48905 /LL=140722 /DEF=Rattus norvegicus cask-interacting protein 1 (Caskin1), mRNA. /PROD=cask-interacting protein 1 /FL=gb:AF451975.1 gb:NM_080690.1 NM_080690 CASK interacting protein 1 Caskin1 140722 NM_080690 0007165 // signal transduction // inferred from physical interaction 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from direct assay 1368426_at NM_031987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031987.1 /DB_XREF=gi:14010892 /GEN=Crot /FEA=FLmRNA /CNT=11 /TID=Rn.4896.1 /TIER=FL /STK=5 /UG=Rn.4896 /LL=83842 /DEF=Rattus norvegicus carnitine O-octanoyltransferase (Crot), mRNA. /PROD=carnitine O-octanoyltransferase /FL=gb:NM_031987.1 gb:U26033.1 gb:J02844.1 NM_031987 carnitine O-octanoyltransferase Crot 83842 NM_031987 0001579 // medium-chain fatty acid transport // traceable author statement /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0015908 // fatty acid transport // not recorded /// 0015908 // fatty acid transport // inferred from electronic annotation /// 0015909 // long-chain fatty acid transport // traceable author statement /// 0042493 // response to drug // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // not recorded /// 0005777 // peroxisome // inferred from electronic annotation /// 0005782 // peroxisomal matrix // not recorded 0008415 // acyltransferase activity // inferred from electronic annotation /// 0008458 // carnitine O-octanoyltransferase activity // inferred from direct assay /// 0008458 // carnitine O-octanoyltransferase activity // not recorded /// 0008458 // carnitine O-octanoyltransferase activity // traceable author statement /// 0008458 // carnitine O-octanoyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368427_at NM_012773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012773.1 /DB_XREF=gi:6978480 /GEN=Akap /FEA=FLmRNA /CNT=10 /TID=Rn.10557.1 /TIER=FL /STK=5 /UG=Rn.10557 /LL=25228 /DEF=Rattus norvegicus A-kinase anchoring protein (Akap), mRNA. /PROD=a-kinase anchoring protein /FL=gb:NM_012773.1 gb:U48288.1 NM_012773 A kinase (PRKA) anchor protein 11 Akap11 498549 NM_012773 0010738 // regulation of protein kinase A signaling cascade // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0019207 // kinase regulator activity // inferred from direct assay /// 0032947 // protein complex scaffold // inferred from mutant phenotype /// 0034237 // protein kinase A regulatory subunit binding // inferred from direct assay 1368428_at NM_057155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057155.1 /DB_XREF=gi:16924019 /GEN=Xpnpep2 /FEA=FLmRNA /CNT=9 /TID=Rn.56142.1 /TIER=FL /STK=5 /UG=Rn.56142 /LL=117522 /DEF=Rattus norvegicus X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound (Xpnpep2), mRNA. /PROD=X-prolyl aminopeptidase (aminopeptidase P) 2,membrane-bound /FL=gb:AF359355.1 gb:NM_057155.1 NM_057155 X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound Xpnpep2 117522 NM_057155 0006508 // proteolysis // inferred from electronic annotation /// 0009987 // cellular process // inferred from electronic annotation 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0008235 // metalloexopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368429_at NM_133615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133615.1 /DB_XREF=gi:19424331 /GEN=Taf9l /FEA=FLmRNA /CNT=9 /TID=Rn.11270.1 /TIER=FL /STK=5 /UG=Rn.11270 /LL=171152 /DEF=Rattus norvegicus TAF9-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31 kD (Taf9l), mRNA. /PROD=TAF9-like RNA polymerase II, TATA box bindingprotein (TBP)-associated factor, 31 kD /FL=gb:NM_133615.1 gb:U40188.1 NM_133615 TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor Taf9b 171152 NM_133615 0006350 // transcription // inferred from electronic annotation /// 0006352 // transcription initiation // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0012501 // programmed cell death // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030307 // positive regulation of cell growth // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005669 // transcription factor TFIID complex // inferred from electronic annotation /// 0005669 // transcription factor TFIID complex // not recorded /// 0033276 // transcription factor TFTC complex // inferred from electronic annotation /// 0033276 // transcription factor TFTC complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368430_at AF154349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF154349.1 /DB_XREF=gi:8132352 /FEA=FLmRNA /CNT=9 /TID=Rn.44616.1 /TIER=FL /STK=5 /UG=Rn.44616 /LL=63865 /UG_GENE=Prsc1 /DEF=Rattus norvegicus legumain mRNA, complete cds. /PROD=legumain /FL=gb:NM_022226.1 gb:AB032766.1 gb:AF154349.1 AF154349 legumain Lgmn 63865 NM_022226 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0008152 // metabolic process // not recorded /// 0040015 // negative regulation of multicellular organism growth // inferred from electronic annotation /// 0040015 // negative regulation of multicellular organism growth // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1368431_at NM_017112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017112.1 /DB_XREF=gi:8393559 /GEN=Hpn /FEA=FLmRNA /CNT=9 /TID=Rn.11139.1 /TIER=FL /STK=5 /UG=Rn.11139 /LL=29135 /DEF=Rattus norvegicus hepsin (Hpn), mRNA. /PROD=hepsin /FL=gb:NM_017112.1 NM_017112 hepsin Hpn 29135 NM_017112 0006508 // proteolysis // inferred from electronic annotation /// 0016049 // cell growth // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1368432_a_at NM_012874 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012874.1 /DB_XREF=gi:6981479 /GEN=Ros1 /FEA=FLmRNA /CNT=8 /TID=Rn.10765.1 /TIER=FL /STK=5 /UG=Rn.10765 /LL=25346 /DEF=Rattus norvegicus Rat heart - derived c - ros - 1 proto - oncogene (Ros1), mRNA. /PROD=rat heart - derived c - ros - 1 proto -oncogene /FL=gb:M35106.1 gb:NM_012874.1 NM_012874 c-ros oncogene 1 , receptor tyrosine kinase Ros1 25346 NM_012874 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // not recorded /// 0010966 // regulation of phosphate transport // inferred from electronic annotation /// 0010966 // regulation of phosphate transport // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368433_at NM_053798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053798.1 /DB_XREF=gi:16758639 /GEN=Sacm1l /FEA=FLmRNA /CNT=8 /TID=Rn.19082.1 /TIER=FL /STK=5 /UG=Rn.19082 /LL=116482 /DEF=Rattus norvegicus SAC1 (supressor of actin mutations 1, homolog)-like (S. cerevisiae) (Sacm1l), mRNA. /PROD=suppressor of actin 1 /FL=gb:NM_053798.1 gb:AF251186.1 NM_053798 SAC1 suppressor of actin mutations 1-like (yeast) Sacm1l 116482 NM_053798 0046856 // phosphoinositide dephosphorylation // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // inferred from direct assay 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from mutant phenotype 1368434_at NM_053853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053853.1 /DB_XREF=gi:16758717 /GEN=Nat1 /FEA=FLmRNA /CNT=8 /TID=Rn.32281.1 /TIER=FL /STK=5 /UG=Rn.32281 /LL=116631 /DEF=Rattus norvegicus N-acetyltransferase 1 (arylamine N-acetyltransferase) (Nat1), mRNA. /PROD=N-acetyltransferase 1 (arylamineN-acetyltransferase) /FL=gb:NM_053853.1 gb:U01344.1 NM_053853 N-acetyltransferase 1 (arylamine N-acetyltransferase) Nat1 116631 NM_001037315 /// NM_001037316 /// NM_053853 0001889 // liver development // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0048565 // digestive tract development // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004060 // arylamine N-acetyltransferase activity // inferred from direct assay /// 0004060 // arylamine N-acetyltransferase activity // not recorded /// 0004060 // arylamine N-acetyltransferase activity // inferred from electronic annotation /// 0008080 // N-acetyltransferase activity // non-traceable author statement /// 0008080 // N-acetyltransferase activity // traceable author statement /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016407 // acetyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030371 // translation repressor activity // traceable author statement 1368435_at NM_031241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031241.1 /DB_XREF=gi:13676850 /GEN=Cyp8b1 /FEA=FLmRNA /CNT=8 /TID=Rn.23013.1 /TIER=FL /STK=5 /UG=Rn.23013 /LL=81924 /DEF=Rattus norvegicus cytochrome P450, 8b1, sterol 12 alpha-hydrolase (Cyp8b1), mRNA. /PROD=cytochrome P450, 8b1, sterol 12 alpha-hydrolase /FL=gb:AB018596.1 gb:AB009686.1 gb:NM_031241.1 NM_031241 cytochrome P450, family 8, subfamily b, polypeptide 1 Cyp8b1 81924 NM_031241 0005789 // endoplasmic reticulum membrane // not recorded 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008397 // sterol 12-alpha-hydroxylase activity // inferred from direct assay /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0033778 // 7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1368436_at NM_017271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017271.1 /DB_XREF=gi:8394271 /GEN=Silg92 /FEA=FLmRNA /CNT=8 /TID=Rn.10413.1 /TIER=FL /STK=5 /UG=Rn.10413 /LL=29648 /DEF=Rattus norvegicus nuclear distribution gene C homolog (Aspergillus) (Silg92), mRNA. /PROD=nuclear distribution gene C homolog(Aspergillus) /FL=gb:NM_017271.1 NM_017271 nuclear distribution gene C homolog (A. nidulans) Nudc 29648 NM_017271 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007097 // nuclear migration // inferred from mutant phenotype /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1368437_at NM_019174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019174.1 /DB_XREF=gi:9506448 /GEN=Ca4 /FEA=FLmRNA /CNT=8 /TID=Rn.9155.1 /TIER=FL /STK=5 /UG=Rn.9155 /DEF=Rattus norvegicus carbonic anhydrase 4 (Ca4), mRNA. /PROD=carbonic anhydrase 4 /FL=gb:NM_019174.1 NM_019174 carbonic anhydrase 4 Car4 29242 NM_019174 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0048513 // organ development // inferred from expression pattern /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from expression pattern /// 0016529 // sarcoplasmic reticulum // inferred from direct assay /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from direct assay 0004089 // carbonate dehydratase activity // inferred from direct assay /// 0004089 // carbonate dehydratase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368438_at NM_022236 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022236.1 /DB_XREF=gi:13489074 /GEN=Pde10a /FEA=FLmRNA /CNT=7 /TID=Rn.44869.1 /TIER=FL /STK=5 /UG=Rn.44869 /LL=63885 /DEF=Rattus norvegicus phosphodiesterase 10A (Pde10a), mRNA. /PROD=phosphodiesterase 10A /FL=gb:AB027155.1 gb:NM_022236.1 NM_022236 phosphodiesterase 10A Pde10a 63885 NM_022236 0006198 // cAMP catabolic process // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0046069 // cGMP catabolic process // inferred from direct assay 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004112 // cyclic-nucleotide phosphodiesterase activity // inferred from direct assay /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // not recorded /// 0008144 // drug binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030552 // cAMP binding // inferred from direct assay /// 0030552 // cAMP binding // inferred from electronic annotation /// 0030553 // cGMP binding // inferred from direct assay /// 0030553 // cGMP binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047555 // 3',5'-cyclic-GMP phosphodiesterase activity // inferred from electronic annotation 1368439_at NM_019193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019193.1 /DB_XREF=gi:9507130 /GEN=Sox10 /FEA=FLmRNA /CNT=7 /TID=Rn.10883.1 /TIER=FL /STK=5 /UG=Rn.10883 /LL=29361 /DEF=Rattus norvegicus SRY-box containing gene 10 (Sox10), mRNA. /PROD=SRY-box containing gene 10 /FL=gb:NM_019193.1 NM_019193 SRY (sex determining region Y)-box 10 Sox10 29361 NM_019193 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0007422 // peripheral nervous system development // inferred from electronic annotation /// 0007422 // peripheral nervous system development // not recorded /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030318 // melanocyte differentiation // inferred from electronic annotation /// 0030318 // melanocyte differentiation // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048468 // cell development // non-traceable author statement /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded /// 0048484 // enteric nervous system development // inferred from electronic annotation /// 0048484 // enteric nervous system development // not recorded /// 0048546 // digestive tract morphogenesis // not recorded /// 0048589 // developmental growth // inferred from electronic annotation /// 0048589 // developmental growth // not recorded /// 0048709 // oligodendrocyte differentiation // inferred from electronic annotation /// 0048709 // oligodendrocyte differentiation // not recorded /// 0048863 // stem cell differentiation // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1368440_at NM_017216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017216.1 /DB_XREF=gi:8394306 /GEN=Slc3a1 /FEA=FLmRNA /CNT=7 /TID=Rn.11196.1 /TIER=FL /STK=5 /UG=Rn.11196 /LL=29484 /DEF=Rattus norvegicus solute carrier family 3, member 1 (Slc3a1), mRNA. /PROD=solute carrier family 3, member 1 /FL=gb:NM_017216.1 gb:M77345.1 NM_017216 solute carrier family 3, member 1 Slc3a1 29484 NM_017216 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from direct assay /// 0006865 // amino acid transport // not recorded /// 0006865 // amino acid transport // inferred from electronic annotation 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005774 // vacuolar membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay 1368441_at NM_031658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031658.1 /DB_XREF=gi:14389304 /GEN=Msln /FEA=FLmRNA /CNT=7 /TID=Rn.18607.1 /TIER=FL /STK=5 /UG=Rn.18607 /LL=60333 /DEF=Rattus norvegicus mesothelin (Msln), mRNA. /PROD=mesothelin /FL=gb:D87351.1 gb:NM_031658.1 NM_031658 mesothelin Msln 60333 NM_031658 0007155 // cell adhesion // inferred from electronic annotation /// 0031016 // pancreas development // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 1368442_at NM_022924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022924.1 /DB_XREF=gi:12621075 /GEN=F2 /FEA=FLmRNA /CNT=7 /TID=Rn.54498.1 /TIER=FL /STK=5 /UG=Rn.54498 /LL=29251 /DEF=Rattus norvegicus coagulation factor II (F2), mRNA. /PROD=coagulation factor II /FL=gb:NM_022924.1 NM_022924 coagulation factor II (thrombin) F2 29251 NM_022924 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0006508 // proteolysis // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006950 // response to stress // inferred from expression pattern /// 0006953 // acute-phase response // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007596 // blood coagulation // inferred from direct assay /// 0007596 // blood coagulation // traceable author statement /// 0007596 // blood coagulation // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0009611 // response to wounding // not recorded /// 0009611 // response to wounding // inferred from electronic annotation /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0030168 // platelet activation // inferred from electronic annotation /// 0030168 // platelet activation // not recorded /// 0030194 // positive regulation of blood coagulation // inferred from electronic annotation /// 0030194 // positive regulation of blood coagulation // not recorded /// 0030307 // positive regulation of cell growth // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // not recorded /// 0032967 // positive regulation of collagen biosynthetic process // inferred from electronic annotation /// 0032967 // positive regulation of collagen biosynthetic process // not recorded /// 0042060 // wound healing // traceable author statement /// 0042730 // fibrinolysis // inferred from electronic annotation /// 0042730 // fibrinolysis // not recorded /// 0045861 // negative regulation of proteolysis // inferred from electronic annotation /// 0045861 // negative regulation of proteolysis // not recorded /// 0048712 // negative regulation of astrocyte differentiation // inferred from electronic annotation /// 0048712 // negative regulation of astrocyte differentiation // not recorded /// 0051209 // release of sequestered calcium ion into cytosol // inferred from electronic annotation /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from electronic annotation /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // not recorded /// 0051480 // cytosolic calcium ion homeostasis // inferred from electronic annotation /// 0051480 // cytosolic calcium ion homeostasis // not recorded 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from direct assay /// 0004252 // serine-type endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0070053 // thrombospondin receptor activity // inferred from electronic annotation /// 0070053 // thrombospondin receptor activity // not recorded 1368443_at NM_133415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133415.1 /DB_XREF=gi:19173781 /GEN=Necab2 /FEA=FLmRNA /CNT=7 /TID=Rn.15796.1 /TIER=FL /STK=5 /UG=Rn.15796 /LL=170928 /DEF=Rattus norvegicus neuronal calcium binding 2 (Necab2), mRNA. /PROD=neuronal calcium binding 2 /FL=gb:NM_133415.1 gb:AF193757.1 NM_133415 N-terminal EF-hand calcium binding protein 2 Necab2 170928 NM_133415 0017000 // antibiotic biosynthetic process // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // non-traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1368444_at NM_022703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022703.1 /DB_XREF=gi:12083666 /GEN=Stg /FEA=FLmRNA /CNT=7 /TID=Rn.9655.1 /TIER=FL /STK=5 /UG=Rn.9655 /LL=64667 /DEF=Rattus norvegicus small glutamine-rich tetratricopeptide repeat (TPR) containing protein (SGT) (Stg), mRNA. /PROD=small glutamine-rich tetratricopeptide repeat(TPR) containing protein (SGT) /FL=gb:NM_022703.1 NM_022703 small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha Sgta 64667 NM_022703 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368445_at BE105448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105448 /DB_XREF=gi:8497550 /DB_XREF=UI-R-BO1-asn-h-05-0-UI.s1 /CLONE=UI-R-BO1-asn-h-05-0-UI /FEA=FLmRNA /CNT=12 /TID=Rn.33112.1 /TIER=ConsEnd /STK=1 /UG=Rn.33112 /LL=78957 /UG_GENE=Shank1 /UG_TITLE=Shank1 /FL=gb:AF159046.1 gb:NM_031751.1 gb:AF131951.1 gb:AF102855.2 BE105448 SH3 and multiple ankyrin repeat domains 1 Shank1 78957 NM_031751 0007016 // cytoskeletal anchoring at plasma membrane // non-traceable author statement 0005622 // intracellular // non-traceable author statement /// 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // non-traceable author statement /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0045211 // postsynaptic membrane // not recorded /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0030159 // receptor signaling complex scaffold activity // inferred from direct assay /// 0031877 // somatostatin receptor binding // inferred from physical interaction /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction 1368446_at NM_012674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012674.1 /DB_XREF=gi:6981577 /GEN=Spink1 /FEA=FLmRNA /CNT=11 /TID=Rn.9767.1 /TIER=FL /STK=5 /UG=Rn.9767 /LL=24833 /DEF=Rattus norvegicus Serine protease inhibitor, kanzal type 1 Trypsin inhibitor-like protein, pancreatic (Spink1), mRNA. /PROD=serine protease inhibitor, kanzal type 1Trypsin inhibitor-like protein, pancreatic /FL=gb:M35299.1 gb:NM_012674.1 gb:M22162.1 gb:M27882.1 NM_012674 serine peptidase inhibitor, Kazal type 3 Spink3 24833 NM_012674 0045861 // negative regulation of proteolysis // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement 0004866 // endopeptidase inhibitor activity // inferred from mutant phenotype /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1368447_x_at M27882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M27882.1 /DB_XREF=gi:206464 /FEA=FLmRNA /CNT=11 /TID=Rn.9767.1 /TIER=FL /STK=2 /UG=Rn.9767 /LL=24833 /UG_GENE=Spink1 /UG_TITLE=Serine protease inhibitor, kanzal type 1 Trypsin inhibitor-like protein, pancreatic /DEF=Rat pancreatic secretory trypsin inhibitor type I (PSTI-I) mRNA, complete cds. /FL=gb:M35299.1 gb:NM_012674.1 gb:M22162.1 gb:M27882.1 M27882 serine peptidase inhibitor, Kazal type 3 Spink3 24833 NM_012674 0045861 // negative regulation of proteolysis // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement 0004866 // endopeptidase inhibitor activity // inferred from mutant phenotype /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1368448_at NM_021586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021586.1 /DB_XREF=gi:11136635 /GEN=Ltbp2 /FEA=FLmRNA /CNT=10 /TID=Rn.40921.1 /TIER=FL /STK=5 /UG=Rn.40921 /LL=59106 /DEF=Rattus norvegicus latent transforming growth factor beta binding protein 2 (Ltbp2), mRNA. /PROD=latent transforming growth factor beta bindingprotein 2 /FL=gb:NM_021586.1 NM_021586 latent transforming growth factor beta binding protein 2 Ltbp2 59106 NM_021586 0007179 // transforming growth factor beta receptor signaling pathway // non-traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019838 // growth factor binding // inferred from electronic annotation 1368449_at NM_133567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133567.1 /DB_XREF=gi:19424251 /GEN=Centa1 /FEA=FLmRNA /CNT=10 /TID=Rn.10539.1 /TIER=FL /STK=2 /UG=Rn.10539 /LL=171097 /DEF=Rattus norvegicus centaurin, alpha 1 (Centa1), mRNA. /PROD=centaurin, alpha 1 /FL=gb:NM_133567.1 gb:U51013.1 gb:AF123047.1 NM_133567 ArfGAP with dual PH domains 1 Adap1 171097 NM_133567 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation /// 0043087 // regulation of GTPase activity // not recorded /// 0048016 // inositol phosphate-mediated signaling // non-traceable author statement 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // not recorded /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from direct assay /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008060 // ARF GTPase activator activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1368450_at NM_022178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022178.1 /DB_XREF=gi:11559934 /GEN=Myo5a /FEA=FLmRNA /CNT=9 /TID=Rn.44865.1 /TIER=FL /STK=5 /UG=Rn.44865 /LL=25017 /DEF=Rattus norvegicus Dilute-opisthotonus (Myo5a), mRNA. /PROD=dilute-opisthotonus /FL=gb:AB035736.1 gb:NM_022178.1 NM_022178 myosin VA Myo5a 25017 NM_022178 0006582 // melanin metabolic process // not recorded /// 0006887 // exocytosis // not recorded /// 0007268 // synaptic transmission // not recorded /// 0007601 // visual perception // not recorded /// 0008152 // metabolic process // not recorded /// 0017157 // regulation of exocytosis // inferred from mutant phenotype /// 0030048 // actin filament-based movement // inferred from direct assay /// 0030048 // actin filament-based movement // not recorded /// 0030050 // vesicle transport along actin filament // inferred from mutant phenotype /// 0030073 // insulin secretion // not recorded /// 0030318 // melanocyte differentiation // not recorded /// 0031585 // regulation of inositol-1,4,5-triphosphate receptor activity // not recorded /// 0031987 // locomotion involved in locomotory behavior // not recorded /// 0032252 // secretory granule localization // inferred from direct assay /// 0032252 // secretory granule localization // inferred from mutant phenotype /// 0032252 // secretory granule localization // not recorded /// 0032400 // melanosome localization // not recorded /// 0032402 // melanosome transport // not recorded /// 0042438 // melanin biosynthetic process // not recorded /// 0042476 // odontogenesis // not recorded /// 0042552 // myelination // not recorded /// 0042640 // anagen // not recorded /// 0042759 // long-chain fatty acid biosynthetic process // not recorded /// 0043473 // pigmentation // inferred from mutant phenotype /// 0043473 // pigmentation // not recorded /// 0048066 // developmental pigmentation // not recorded /// 0050808 // synapse organization // not recorded /// 0050885 // neuromuscular process controlling balance // not recorded /// 0051643 // endoplasmic reticulum localization // not recorded 0001726 // ruffle // not recorded /// 0001750 // photoreceptor outer segment // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005882 // intermediate filament // not recorded /// 0008021 // synaptic vesicle // inferred from direct assay /// 0016459 // myosin complex // inferred from electronic annotation /// 0016459 // myosin complex // not recorded /// 0030141 // stored secretory granule // inferred from direct assay /// 0030141 // stored secretory granule // not recorded /// 0030141 // stored secretory granule // traceable author statement /// 0030424 // axon // inferred from direct assay /// 0042470 // melanosome // not recorded /// 0042641 // actomyosin // not recorded /// 0042642 // actomyosin, myosin complex part // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043025 // neuronal cell body // not recorded 0000146 // microfilament motor activity // inferred from direct assay /// 0000146 // microfilament motor activity // not recorded /// 0000149 // SNARE binding // inferred from physical interaction /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003774 // motor activity // inferred from mutant phenotype /// 0003774 // motor activity // not recorded /// 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0017075 // syntaxin-1 binding // inferred from physical interaction /// 0043008 // ATP-dependent protein binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046983 // protein dimerization activity // inferred from mutant phenotype /// 0048306 // calcium-dependent protein binding // inferred from physical interaction /// 0051010 // microtubule plus-end binding // not recorded 1368451_at NM_053506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053506.1 /DB_XREF=gi:16758263 /GEN=Hrh3 /FEA=FLmRNA /CNT=9 /TID=Rn.7617.1 /TIER=FL /STK=5 /UG=Rn.7617 /LL=85268 /DEF=Rattus norvegicus histamine receptor H3 (Hrh3), mRNA. /PROD=histamine receptor H3 /FL=gb:AY009370.1 gb:AB015646.1 gb:NM_053506.1 NM_053506 histamine receptor H3 Hrh3 85268 NM_053506 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007194 // negative regulation of adenylate cyclase activity // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0007420 // brain development // inferred from expression pattern /// 0007612 // learning // inferred from mutant phenotype /// 0007613 // memory // inferred from mutant phenotype /// 0014050 // negative regulation of glutamate secretion // inferred from mutant phenotype /// 0014053 // negative regulation of gamma-aminobutyric acid secretion // inferred from mutant phenotype /// 0014061 // regulation of norepinephrine secretion // inferred from mutant phenotype /// 0014063 // negative regulation of serotonin secretion // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from mutant phenotype /// 0042755 // eating behavior // inferred from mutant phenotype /// 0042756 // drinking behavior // inferred from mutant phenotype /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0050679 // positive regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0050890 // cognition // inferred from mutant phenotype 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0043209 // myelin sheath // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004969 // histamine receptor activity // inferred from direct assay /// 0004969 // histamine receptor activity // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay 1368452_at NM_031013 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031013.1 /DB_XREF=gi:13591915 /GEN=Abcc6 /FEA=FLmRNA /CNT=8 /TID=Rn.29976.1 /TIER=FL /STK=5 /UG=Rn.29976 /LL=81642 /DEF=Rattus norvegicus liver multidrug resistance-associated protein 6 (Abcc6), mRNA. /PROD=liver multidrug resistance-associated protein 6 /FL=gb:NM_031013.1 gb:AB010466.1 gb:U73038.1 NM_031013 ATP-binding cassette, sub-family C (CFTR/MRP), member 6 Abcc6 81642 NM_031013 0006200 // ATP catabolic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016328 // lateral plasma membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 1368453_at NM_031344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031344.1 /DB_XREF=gi:13786181 /GEN=Fads2 /FEA=FLmRNA /CNT=8 /TID=Rn.32872.1 /TIER=FL /STK=5 /UG=Rn.32872 /LL=83512 /DEF=Rattus norvegicus delta-6 fatty acid desaturase (Fads2), mRNA. /PROD=delta-6 fatty acid desaturase /FL=gb:AB021980.1 gb:NM_031344.1 NM_031344 fatty acid desaturase 2 Fads2 83512 NM_031344 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0042761 // very long-chain fatty acid biosynthetic process // traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004768 // stearoyl-CoA 9-desaturase activity // not recorded /// 0004768 // stearoyl-CoA 9-desaturase activity // traceable author statement /// 0004768 // stearoyl-CoA 9-desaturase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016717 // oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation 1368454_at NM_053364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053364.1 /DB_XREF=gi:16758091 /GEN=Plfr /FEA=FLmRNA /CNT=8 /TID=Rn.15366.1 /TIER=FL /STK=5 /UG=Rn.15366 /LL=84377 /DEF=Rattus norvegicus proliferin-related protein (Plfr), mRNA. /PROD=proliferin-related protein /FL=gb:AF139809.1 gb:AF226609.1 gb:NM_053364.1 NM_053364 prolactin family 7, subfamily d, member 1 Prl7d1 84377 NM_053364 0016525 // negative regulation of angiogenesis // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // not recorded /// 0043537 // negative regulation of blood vessel endothelial cell migration // inferred from electronic annotation /// 0043537 // negative regulation of blood vessel endothelial cell migration // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005179 // hormone activity // inferred from electronic annotation /// 0005179 // hormone activity // not recorded 1368455_at NM_133540 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133540.1 /DB_XREF=gi:19424201 /GEN=Nkg7 /FEA=FLmRNA /CNT=8 /TID=Rn.20448.1 /TIER=FL /STK=5 /UG=Rn.20448 /LL=171062 /DEF=Rattus norvegicus natural killer cell group 7 sequence (Nkg7), mRNA. /PROD=natural killer cell group 7 sequence /FL=gb:AF082535.1 gb:NM_133540.1 NM_133540 natural killer cell group 7 sequence Nkg7 171062 NM_133540 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1368456_at NM_017291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017291.1 /DB_XREF=gi:8393398 /GEN=Gabrr1 /FEA=FLmRNA /CNT=7 /TID=Rn.33552.1 /TIER=FL /STK=5 /UG=Rn.33552 /LL=29694 /DEF=Rattus norvegicus gamma-aminobutyric acid (GABA-A) receptor, subunit rho 1 (Gabrr1), mRNA. /PROD=gamma-aminobutyric acid (GABA-A) receptor,subunit rho 1 /FL=gb:NM_017291.1 gb:U21070.1 NM_017291 gamma-aminobutyric acid (GABA) receptor, rho 1 Gabrr1 29694 NM_017291 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007601 // visual perception // non-traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004890 // GABA-A receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0016917 // GABA receptor activity // inferred from direct assay /// 0042803 // protein homodimerization activity // traceable author statement /// 0046982 // protein heterodimerization activity // inferred from expression pattern 1368457_at U21070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U21070.1 /DB_XREF=gi:791208 /FEA=FLmRNA /CNT=7 /TID=Rn.33552.1 /TIER=FL /STK=1 /UG=Rn.33552 /LL=29694 /UG_GENE=Gabrr1 /DEF=Rattus norvegicus GABA rho 1 subunit mRNA, complete cds. /PROD=GABA rho subunit /FL=gb:NM_017291.1 gb:U21070.1 U21070 gamma-aminobutyric acid (GABA) receptor, rho 1 Gabrr1 29694 NM_017291 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007601 // visual perception // non-traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004890 // GABA-A receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0016917 // GABA receptor activity // inferred from direct assay /// 0042803 // protein homodimerization activity // traceable author statement /// 0046982 // protein heterodimerization activity // inferred from expression pattern 1368458_at NM_012942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012942.1 /DB_XREF=gi:7549753 /GEN=Cyp7a1 /FEA=FLmRNA /CNT=7 /TID=Rn.10737.1 /TIER=FL /STK=5 /UG=Rn.10737 /LL=25428 /DEF=Rattus norvegicus Cytochrom P450 (cholesterol hydroxylase 7 alpha) (Cyp7a1), mRNA. /PROD=cytochrom P450 (cholesterol hydroxylase 7alpha) /FL=gb:NM_012942.1 gb:J05460.1 gb:J05509.1 gb:J05430.1 NM_012942 cytochrome P450, family 7, subfamily a, polypeptide 1 Cyp7a1 25428 NM_012942 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006699 // bile acid biosynthetic process // inferred from direct assay /// 0006699 // bile acid biosynthetic process // not recorded /// 0006699 // bile acid biosynthetic process // traceable author statement /// 0006707 // cholesterol catabolic process // inferred from direct assay /// 0006707 // cholesterol catabolic process // not recorded /// 0006707 // cholesterol catabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0070857 // regulation of bile acid biosynthetic process // inferred from direct assay /// 0070857 // regulation of bile acid biosynthetic process // not recorded /// 0071333 // cellular response to glucose stimulus // not recorded /// 0071333 // cellular response to glucose stimulus // inferred from sequence or structural similarity /// 0071333 // cellular response to glucose stimulus // inferred from electronic annotation /// 0071397 // cellular response to cholesterol // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005792 // microsome // traceable author statement /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008123 // cholesterol 7-alpha-monooxygenase activity // inferred from direct assay /// 0008123 // cholesterol 7-alpha-monooxygenase activity // not recorded /// 0008123 // cholesterol 7-alpha-monooxygenase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368459_at NM_024375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024375.1 /DB_XREF=gi:13242276 /GEN=Gdf10 /FEA=FLmRNA /CNT=7 /TID=Rn.8707.1 /TIER=FL /STK=5 /UG=Rn.8707 /LL=79216 /DEF=Rattus norvegicus prepro bone inducing protein (Gdf10), mRNA. /PROD=prepro bone inducing protein /FL=gb:NM_024375.1 gb:D49494.1 NM_024375 growth differentiation factor 10 Gdf10 79216 NM_024375 0001649 // osteoblast differentiation // inferred from expression pattern /// 0021549 // cerebellum development // inferred from expression pattern /// 0030278 // regulation of ossification // inferred from expression pattern /// 0040007 // growth // inferred from electronic annotation /// 0042698 // ovulation cycle // inferred from expression pattern /// 0045669 // positive regulation of osteoblast differentiation // inferred from direct assay /// 0071559 // response to transforming growth factor beta stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation 1368460_at NM_031741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031741.1 /DB_XREF=gi:13929043 /GEN=Slc2a5 /FEA=FLmRNA /CNT=7 /TID=Rn.10900.1 /TIER=FL /STK=5 /UG=Rn.10900 /LL=65197 /DEF=Rattus norvegicus solute carrier family 2 (facilitated glucose transporter), member 5 (Slc2a5), mRNA. /PROD=solute carrier family 2 (facilitated glucosetransporter), member 5 /FL=gb:NM_031741.1 gb:L05195.1 gb:D13871.1 NM_031741 solute carrier family 2 (facilitated glucose/fructose transporter), member 5 Slc2a5 65197 NM_031741 0006810 // transport // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0015755 // fructose transport // inferred from direct assay /// 0015755 // fructose transport // inferred from expression pattern /// 0015758 // glucose transport // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005353 // fructose transmembrane transporter activity // inferred from direct assay /// 0005353 // fructose transmembrane transporter activity // inferred from electronic annotation /// 0005353 // fructose transmembrane transporter activity // not recorded /// 0005355 // glucose transmembrane transporter activity // inferred from direct assay /// 0022891 // substrate-specific transmembrane transporter activity // inferred from electronic annotation 1368461_at NM_031332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031332.1 /DB_XREF=gi:13786159 /GEN=LOC83500 /FEA=FLmRNA /CNT=7 /TID=Rn.23348.1 /TIER=FL /STK=5 /UG=Rn.23348 /LL=83500 /DEF=Rattus norvegicus organic anion transporter (LOC83500), mRNA. /PROD=organic anion transporter /FL=gb:AB017446.1 gb:NM_031332.1 NM_031332 solute carrier family 22 (organic anion transporter), member 8 Slc22a8 83500 NM_031332 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0009636 // response to toxin // inferred from electronic annotation /// 0015697 // quaternary ammonium group transport // inferred from direct assay /// 0031427 // response to methotrexate // inferred from expression pattern /// 0034635 // glutathione transport // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005452 // inorganic anion exchanger activity // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0008514 // organic anion transmembrane transporter activity // inferred from direct assay /// 0015075 // ion transmembrane transporter activity // inferred from electronic annotation /// 0015651 // quaternary ammonium group transmembrane transporter activity // inferred from direct assay 1368462_at NM_031045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031045.1 /DB_XREF=gi:13591972 /GEN=Itpka /FEA=FLmRNA /CNT=7 /TID=Rn.9877.1 /TIER=FL /STK=5 /UG=Rn.9877 /LL=81677 /DEF=Rattus norvegicus inositol 1,4,5-triphosphate 3-kinase (Itpka), mRNA. /PROD=inositol 1,4,5-triphosphate 3-kinase /FL=gb:M29787.1 gb:NM_031045.1 NM_031045 inositol 1,4,5-trisphosphate 3-kinase A Itpka 81677 NM_031045 0006020 // inositol metabolic process // inferred from electronic annotation /// 0006020 // inositol metabolic process // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from direct assay /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008440 // inositol trisphosphate 3-kinase activity // inferred from direct assay /// 0008440 // inositol trisphosphate 3-kinase activity // inferred from mutant phenotype /// 0008440 // inositol trisphosphate 3-kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368463_at NM_053653 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053653.1 /DB_XREF=gi:16758991 /GEN=Vegfc /FEA=FLmRNA /CNT=7 /TID=Rn.6913.1 /TIER=FL /STK=5 /UG=Rn.6913 /LL=114111 /DEF=Rattus norvegicus vascular endothelial growth factor C (Vegfc), mRNA. /PROD=vascular endothelial growth factor C /FL=gb:NM_053653.1 gb:AY032729.1 NM_053653 vascular endothelial growth factor C Vegfc 114111 NM_053653 0001525 // angiogenesis // inferred from mutant phenotype /// 0001525 // angiogenesis // inferred from electronic annotation /// 0002052 // positive regulation of neuroblast proliferation // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0016331 // morphogenesis of embryonic epithelium // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030947 // regulation of vascular endothelial growth factor receptor signaling pathway // inferred from mutant phenotype /// 0031954 // positive regulation of protein autophosphorylation // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from mutant phenotype /// 0045765 // regulation of angiogenesis // traceable author statement /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0048010 // vascular endothelial growth factor receptor signaling pathway // not recorded /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0050714 // positive regulation of protein secretion // inferred from mutant phenotype /// 0050930 // induction of positive chemotaxis // inferred from electronic annotation /// 0050930 // induction of positive chemotaxis // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0060754 // positive regulation of mast cell chemotaxis // inferred from electronic annotation /// 0060754 // positive regulation of mast cell chemotaxis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // not recorded 0008083 // growth factor activity // traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation /// 0042056 // chemoattractant activity // inferred from electronic annotation /// 0042056 // chemoattractant activity // not recorded /// 0043185 // vascular endothelial growth factor receptor 3 binding // inferred from mutant phenotype /// 0043185 // vascular endothelial growth factor receptor 3 binding // not recorded /// 0043185 // vascular endothelial growth factor receptor 3 binding // inferred from electronic annotation 1368464_at NM_022393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022393.1 /DB_XREF=gi:11693133 /GEN=Mgl /FEA=FLmRNA /CNT=7 /TID=Rn.779.1 /TIER=FL /STK=5 /UG=Rn.779 /LL=64195 /DEF=Rattus norvegicus macrophage galactose N-acetyl-galactosamine specific lectin (Mgl), mRNA. /PROD=GalGalNAc-specific lectin /FL=gb:J05495.1 gb:NM_022393.1 NM_022393 C-type lectin domain family 10, member A Clec10a 64195 NM_022393 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1368465_at NM_012892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012892.1 /DB_XREF=gi:6978436 /GEN=Accn1 /FEA=FLmRNA /CNT=6 /TID=Rn.37523.1 /TIER=FL /STK=5 /UG=Rn.37523 /LL=25364 /DEF=Rattus norvegicus Amiloride-sensitive cation channel 1, neuronal (degenerin) (Accn1), mRNA. /PROD=amiloride-sensitive cation channel 1, neuronal(degenerin), two different splice products: MDEG1 andMDEG2 /FL=gb:U53211.1 gb:NM_012892.1 NM_012892 amiloride-sensitive cation channel 1, neuronal Accn1 25364 NM_001034014 /// NM_012892 0001101 // response to acid // inferred from mutant phenotype /// 0001101 // response to acid // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006812 // cation transport // traceable author statement /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // not recorded /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0007602 // phototransduction // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0009612 // response to mechanical stimulus // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0050915 // sensory perception of sour taste // traceable author statement /// 0050974 // detection of mechanical stimulus involved in sensory perception // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0043005 // neuron projection // not recorded /// 0043025 // neuronal cell body // not recorded 0005216 // ion channel activity // inferred from direct assay /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005248 // voltage-gated sodium channel activity // inferred from direct assay /// 0005261 // cation channel activity // not recorded /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015280 // ligand-gated sodium channel activity // inferred from mutant phenotype /// 0015280 // ligand-gated sodium channel activity // not recorded /// 0015280 // ligand-gated sodium channel activity // inferred from electronic annotation 1368466_a_at NM_017213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017213.1 /DB_XREF=gi:8393868 /GEN=Odf2 /FEA=FLmRNA /CNT=6 /TID=Rn.11062.1 /TIER=FL /STK=5 /UG=Rn.11062 /LL=29479 /DEF=Rattus norvegicus outer dense fiber of sperm tails 2 (Odf2), mRNA. /PROD=outer dense fiber of sperm tails 2 /FL=gb:AF053971.1 gb:NM_017213.1 NM_017213 outer dense fiber of sperm tails 2 Odf2 29479 NM_001145005 /// NM_017213 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007286 // spermatid development // inferred from expression pattern /// 0030154 // cell differentiation // inferred from electronic annotation 0000922 // spindle pole // inferred from electronic annotation /// 0001520 // outer dense fiber // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005814 // centriole // inferred from electronic annotation /// 0005814 // centriole // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0019861 // flagellum // not recorded /// 0019861 // flagellum // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1368467_at NM_019623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019623.1 /DB_XREF=gi:9665224 /GEN=Cyp4f1 /FEA=FLmRNA /CNT=6 /TID=Rn.5722.1 /TIER=FL /STK=5 /UG=Rn.5722 /LL=56266 /DEF=Rattus norvegicus cytochrome P450 4F1 (Cyp4f1), mRNA. /PROD=cytochrome P450 4F1 /FL=gb:M94548.1 gb:NM_019623.1 NM_019623 cytochrome P450, family 4, subfamily f, polypeptide 1 Cyp4f1 56266 NM_019623 0006690 // icosanoid metabolic process // inferred from direct assay /// 0009636 // response to toxin // inferred from expression pattern /// 0019369 // arachidonic acid metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008391 // arachidonic acid monooxygenase activity // inferred from direct assay /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0019825 // oxygen binding // not recorded /// 0020037 // heme binding // inferred from direct assay /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050544 // arachidonic acid binding // inferred from direct assay /// 0070330 // aromatase activity // inferred from electronic annotation 1368468_at NM_017286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017286.1 /DB_XREF=gi:8393223 /GEN=Cyp11a /FEA=FLmRNA /CNT=6 /TID=Rn.1401.1 /TIER=FL /STK=5 /UG=Rn.1401 /LL=29680 /DEF=Rattus norvegicus cytochrome P450, 11a, cholesterol side chain cleavage (Cyp11a), mRNA. /PROD=cytochrome P450, 11a, cholesterol side chaincleavage /FL=gb:J05156.1 gb:NM_017286.1 NM_017286 cytochrome P450, family 11, subfamily a, polypeptide 1 Cyp11a1 29680 NM_017286 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from mutant phenotype /// 0006694 // steroid biosynthetic process // not recorded /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006700 // C21-steroid hormone biosynthetic process // inferred from electronic annotation /// 0006700 // C21-steroid hormone biosynthetic process // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0007617 // mating behavior // inferred from mutant phenotype /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0021549 // cerebellum development // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from mutant phenotype /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060014 // granulosa cell differentiation // inferred from expression pattern 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030061 // mitochondrial crista // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008386 // cholesterol monooxygenase (side-chain-cleaving) activity // inferred from mutant phenotype /// 0008386 // cholesterol monooxygenase (side-chain-cleaving) activity // not recorded /// 0008386 // cholesterol monooxygenase (side-chain-cleaving) activity // traceable author statement /// 0008386 // cholesterol monooxygenase (side-chain-cleaving) activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015485 // cholesterol binding // inferred from mutant phenotype /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368469_at NM_012779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012779.1 /DB_XREF=gi:6978532 /GEN=Aqp5 /FEA=FLmRNA /CNT=6 /TID=Rn.10066.1 /TIER=FL /STK=5 /UG=Rn.10066 /LL=25241 /DEF=Rattus norvegicus Aquaporin 5 (Aqp5), mRNA. /PROD=aquaporin 5 /FL=gb:NM_012779.1 gb:U16245.1 NM_012779 aquaporin 5 Aqp5 25241 NM_012779 0006810 // transport // inferred from electronic annotation /// 0006833 // water transport // not recorded /// 0015670 // carbon dioxide transport // inferred from electronic annotation /// 0015670 // carbon dioxide transport // not recorded /// 0015670 // carbon dioxide transport // inferred from direct assay /// 0030157 // pancreatic juice secretion // inferred from electronic annotation /// 0030157 // pancreatic juice secretion // not recorded /// 0042476 // odontogenesis // inferred from electronic annotation /// 0042476 // odontogenesis // not recorded /// 0046541 // saliva secretion // inferred from electronic annotation /// 0046541 // saliva secretion // not recorded /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005902 // microvillus // inferred from electronic annotation /// 0005902 // microvillus // not recorded /// 0009925 // basal plasma membrane // inferred from electronic annotation /// 0009925 // basal plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015250 // water channel activity // not recorded /// 0015250 // water channel activity // traceable author statement /// 0015250 // water channel activity // inferred from electronic annotation 1368470_at NM_012960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012960.1 /DB_XREF=gi:6978889 /GEN=Ggh /FEA=FLmRNA /CNT=6 /TID=Rn.10260.1 /TIER=FL /STK=5 /UG=Rn.10260 /LL=25455 /DEF=Rattus norvegicus Gamma-glutamyl hydrolase (Ggh), mRNA. /PROD=gamma-glutamyl hydrolase /FL=gb:NM_012960.1 gb:U38379.1 NM_012960 gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase) Ggh 25455 NM_012960 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0010043 // response to zinc ion // inferred from direct assay /// 0032868 // response to insulin stimulus // inferred from direct assay /// 0042493 // response to drug // inferred from direct assay /// 0045471 // response to ethanol // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0005764 // lysosome // traceable author statement /// 0005764 // lysosome // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008242 // omega peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0034722 // gamma-glutamyl-peptidase activity // not recorded /// 0034722 // gamma-glutamyl-peptidase activity // inferred from sequence or structural similarity /// 0034722 // gamma-glutamyl-peptidase activity // inferred from electronic annotation 1368471_at NM_013118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013118.1 /DB_XREF=gi:6980993 /GEN=Guca2a /FEA=FLmRNA /CNT=6 /TID=Rn.11388.1 /TIER=FL /STK=5 /UG=Rn.11388 /LL=25656 /DEF=Rattus norvegicus Guanylate cyclase activator 2 (guanylin) (Guca2a), mRNA. /PROD=guanylate cyclase activator 2 (guanylin) /FL=gb:M95493.1 gb:NM_013118.1 gb:M93005.1 NM_013118 guanylate cyclase activator 2a (guanylin) Guca2a 25656 NM_013118 0005576 // extracellular region // inferred from electronic annotation 0008047 // enzyme activator activity // inferred from electronic annotation /// 0030249 // guanylate cyclase regulator activity // non-traceable author statement /// 0030250 // guanylate cyclase activator activity // inferred from direct assay 1368472_at NM_031320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031320.1 /DB_XREF=gi:13786139 /GEN=Celsr3 /FEA=FLmRNA /CNT=11 /TID=Rn.14558.1 /TIER=FL /STK=5 /UG=Rn.14558 /LL=83466 /DEF=Rattus norvegicus cadherin EGF LAG seven-pass G-type receptor 3 (Celsr3), mRNA. /PROD=cadherin EGF LAG seven-pass G-type receptor 3 /FL=gb:NM_031320.1 gb:AB011528.1 NM_031320 cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila) Celsr3 83466 NM_031320 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007413 // axonal fasciculation // inferred from electronic annotation /// 0007413 // axonal fasciculation // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368473_at NM_019280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019280.1 /DB_XREF=gi:9506724 /GEN=Gja5 /FEA=FLmRNA /CNT=10 /TID=Rn.10851.1 /TIER=FL /STK=5 /UG=Rn.10851 /LL=50563 /DEF=Rattus norvegicus gap junction membrane channel protein alpha 5 (connexin 40) (Gja5), mRNA. /PROD=gap junction membrane channel protein alpha 5 /FL=gb:AF021806.1 gb:NM_019280.1 gb:M83092.1 NM_019280 gap junction protein, alpha 5 Gja5 50563 NM_019280 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0007154 // cell communication // inferred from electronic annotation /// 0007267 // cell-cell signaling // inferred from direct assay /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0035050 // embryonic heart tube development // inferred from electronic annotation /// 0035050 // embryonic heart tube development // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005921 // gap junction // inferred from electronic annotation /// 0005922 // connexon complex // inferred from direct assay /// 0005922 // connexon complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005243 // gap junction channel activity // inferred from direct assay 1368474_at NM_012889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012889.1 /DB_XREF=gi:6981699 /GEN=Vcam1 /FEA=FLmRNA /CNT=9 /TID=Rn.11267.1 /TIER=FL /STK=5 /UG=Rn.11267 /LL=25361 /DEF=Rattus norvegicus Vascular cell adhesion molecule 1 (Vcam1), mRNA. /PROD=vascular cell adhesion molecule 1 /FL=gb:M84488.1 gb:NM_012889.1 NM_012889 vascular cell adhesion molecule 1 Vcam1 25361 NM_012889 0001666 // response to hypoxia // inferred from expression pattern /// 0002526 // acute inflammatory response // inferred from expression pattern /// 0002544 // chronic inflammatory response // inferred from expression pattern /// 0007155 // cell adhesion // inferred from mutant phenotype /// 0007155 // cell adhesion // not recorded /// 0007155 // cell adhesion // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007157 // heterophilic cell-cell adhesion // inferred from electronic annotation /// 0007157 // heterophilic cell-cell adhesion // not recorded /// 0007159 // leukocyte cell-cell adhesion // not recorded /// 0007159 // leukocyte cell-cell adhesion // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0010212 // response to ionizing radiation // inferred from expression pattern /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0022614 // membrane to membrane docking // inferred from electronic annotation /// 0022614 // membrane to membrane docking // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0044419 // interspecies interaction between organisms // inferred from electronic annotation /// 0050901 // leukocyte tethering or rolling // inferred from electronic annotation /// 0050901 // leukocyte tethering or rolling // not recorded /// 0060669 // embryonic placenta morphogenesis // inferred from electronic annotation /// 0060669 // embryonic placenta morphogenesis // not recorded /// 0060710 // chorio-allantoic fusion // inferred from electronic annotation /// 0060710 // chorio-allantoic fusion // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005886 // plasma membrane // not recorded /// 0005902 // microvillus // inferred from electronic annotation /// 0005902 // microvillus // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030175 // filopodium // inferred from electronic annotation /// 0030175 // filopodium // not recorded /// 0042383 // sarcolemma // inferred from direct assay /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded 0005178 // integrin binding // inferred from mutant phenotype /// 0005178 // integrin binding // not recorded /// 0005178 // integrin binding // inferred from electronic annotation /// 0050839 // cell adhesion molecule binding // inferred from electronic annotation /// 0050839 // cell adhesion molecule binding // not recorded 1368475_at NM_019274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019274.1 /DB_XREF=gi:9506502 /GEN=Colq /FEA=FLmRNA /CNT=8 /TID=Rn.10841.1 /TIER=FL /STK=5 /UG=Rn.10841 /LL=29755 /DEF=Rattus norvegicus collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase (Colq), mRNA. /PROD=collagen-like tail subunit (single strand ofhomotrimer) of asymmetric acetylcholinesterase /FL=gb:AF007583.1 gb:NM_019274.1 NM_019274 collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase Colq 29755 NM_019274 0042135 // neurotransmitter catabolic process // inferred from electronic annotation 0005605 // basal lamina // traceable author statement /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005198 // structural molecule activity // traceable author statement /// 0008201 // heparin binding // inferred from direct assay 1368476_at NM_013131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013131.1 /DB_XREF=gi:6981207 /GEN=Mlr /FEA=FLmRNA /CNT=7 /TID=Rn.9678.1 /TIER=FL /STK=5 /UG=Rn.9678 /LL=25672 /DEF=Rattus norvegicus Mineralocorticoid receptor (aldosterone receptor) (Mlr), mRNA. /PROD=mineralocorticoid receptor (aldosteronereceptor) /FL=gb:M36074.1 gb:NM_013131.1 NM_013131 nuclear receptor subfamily 3, group C, member 2 Nr3c2 25672 NM_013131 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006883 // cellular sodium ion homeostasis // not recorded /// 0007588 // excretion // not recorded /// 0031959 // mineralocorticoid receptor signaling pathway // inferred from mutant phenotype /// 0042127 // regulation of cell proliferation // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from mutant phenotype /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005496 // steroid binding // inferred from direct assay /// 0005496 // steroid binding // inferred from mutant phenotype /// 0005496 // steroid binding // not recorded /// 0005496 // steroid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0017082 // mineralocorticoid receptor activity // inferred from direct assay /// 0042562 // hormone binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay 1368477_at NM_012914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012914.1 /DB_XREF=gi:6978554 /GEN=Atp2a3 /FEA=FLmRNA /CNT=7 /TID=Rn.9920.1 /TIER=FL /STK=5 /UG=Rn.9920 /LL=25391 /DEF=Rattus norvegicus ATPase, Ca++ transporting, ubiquitous (Atp2a3), mRNA. /PROD=ATPase, Ca++ transporting, ubiquitous /FL=gb:M30581.1 gb:NM_012914.1 NM_012914 ATPase, Ca++ transporting, ubiquitous Atp2a3 25391 NM_012914 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // not recorded /// 0031965 // nuclear membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // inferred from direct assay /// 0005388 // calcium-transporting ATPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368478_at NM_012546 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012546.1 /DB_XREF=gi:6978774 /GEN=Drd1a /FEA=FLmRNA /CNT=7 /TID=Rn.24039.1 /TIER=FL /STK=5 /UG=Rn.24039 /LL=24316 /DEF=Rattus norvegicus Dopamine-1A receptor (Drd1a), mRNA. /PROD=dopamine-1A receptor /FL=gb:NM_012546.1 gb:M35077.1 NM_012546 dopamine receptor D1A Drd1a 24316 NM_012546 0001659 // temperature homeostasis // inferred from electronic annotation /// 0001659 // temperature homeostasis // not recorded /// 0001661 // conditioned taste aversion // inferred from electronic annotation /// 0001661 // conditioned taste aversion // not recorded /// 0001662 // behavioral fear response // inferred from electronic annotation /// 0001662 // behavioral fear response // not recorded /// 0001963 // synaptic transmission, dopaminergic // inferred from direct assay /// 0001963 // synaptic transmission, dopaminergic // inferred from mutant phenotype /// 0001963 // synaptic transmission, dopaminergic // not recorded /// 0001963 // synaptic transmission, dopaminergic // inferred from electronic annotation /// 0001964 // startle response // not recorded /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0001975 // response to amphetamine // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from mutant phenotype /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006606 // protein import into nucleus // not recorded /// 0006886 // intracellular protein transport // inferred from mutant phenotype /// 0006936 // muscle contraction // inferred from electronic annotation /// 0006936 // muscle contraction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007187 // G-protein signaling, coupled to cyclic nucleotide second messenger // inferred from electronic annotation /// 0007187 // G-protein signaling, coupled to cyclic nucleotide second messenger // not recorded /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007190 // activation of adenylate cyclase activity // inferred from direct assay /// 0007190 // activation of adenylate cyclase activity // not recorded /// 0007190 // activation of adenylate cyclase activity // inferred from electronic annotation /// 0007191 // activation of adenylate cyclase activity by dopamine receptor signaling pathway // inferred from direct assay /// 0007191 // activation of adenylate cyclase activity by dopamine receptor signaling pathway // not recorded /// 0007191 // activation of adenylate cyclase activity by dopamine receptor signaling pathway // inferred from electronic annotation /// 0007212 // dopamine receptor signaling pathway // inferred from direct assay /// 0007212 // dopamine receptor signaling pathway // inferred from mutant phenotype /// 0007212 // dopamine receptor signaling pathway // not recorded /// 0007212 // dopamine receptor signaling pathway // traceable author statement /// 0007212 // dopamine receptor signaling pathway // inferred from electronic annotation /// 0007416 // synapse assembly // inferred from expression pattern /// 0007610 // behavior // not recorded /// 0007610 // behavior // inferred from electronic annotation /// 0007612 // learning // not recorded /// 0007612 // learning // inferred from electronic annotation /// 0007613 // memory // inferred from electronic annotation /// 0007613 // memory // not recorded /// 0007617 // mating behavior // inferred from electronic annotation /// 0007617 // mating behavior // not recorded /// 0007625 // grooming behavior // inferred from electronic annotation /// 0007625 // grooming behavior // not recorded /// 0007626 // locomotory behavior // inferred from mutant phenotype /// 0007626 // locomotory behavior // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007628 // adult walking behavior // inferred from electronic annotation /// 0007628 // adult walking behavior // not recorded /// 0007631 // feeding behavior // not recorded /// 0007631 // feeding behavior // inferred from electronic annotation /// 0008306 // associative learning // inferred from mutant phenotype /// 0008306 // associative learning // not recorded /// 0008306 // associative learning // inferred from electronic annotation /// 0008542 // visual learning // inferred from mutant phenotype /// 0008542 // visual learning // not recorded /// 0008542 // visual learning // inferred from electronic annotation /// 0014002 // astrocyte development // inferred from electronic annotation /// 0014002 // astrocyte development // not recorded /// 0015872 // dopamine transport // inferred from electronic annotation /// 0015872 // dopamine transport // not recorded /// 0019226 // transmission of nerve impulse // not recorded /// 0019226 // transmission of nerve impulse // inferred from electronic annotation /// 0019228 // regulation of action potential in neuron // inferred from electronic annotation /// 0019228 // regulation of action potential in neuron // not recorded /// 0019722 // calcium-mediated signaling // inferred from direct assay /// 0021542 // dentate gyrus development // inferred from electronic annotation /// 0021542 // dentate gyrus development // not recorded /// 0021756 // striatum development // inferred from electronic annotation /// 0021756 // striatum development // not recorded /// 0021766 // hippocampus development // not recorded /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021853 // cerebral cortex GABAergic interneuron migration // inferred from electronic annotation /// 0021853 // cerebral cortex GABAergic interneuron migration // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0030336 // negative regulation of cell migration // inferred from mutant phenotype /// 0030384 // phosphoinositide metabolic process // inferred from direct assay /// 0030432 // peristalsis // inferred from electronic annotation /// 0030432 // peristalsis // not recorded /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from mutant phenotype /// 0030819 // positive regulation of cAMP biosynthetic process // not recorded /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0031161 // phosphatidylinositol catabolic process // inferred from direct assay /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0035106 // operant conditioning // inferred from mutant phenotype /// 0035106 // operant conditioning // not recorded /// 0035106 // operant conditioning // inferred from electronic annotation /// 0042053 // regulation of dopamine metabolic process // inferred from electronic annotation /// 0042053 // regulation of dopamine metabolic process // not recorded /// 0042220 // response to cocaine // not recorded /// 0042220 // response to cocaine // inferred from electronic annotation /// 0042321 // negative regulation of circadian sleep/wake cycle, sleep // inferred from direct assay /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // not recorded /// 0042755 // eating behavior // inferred from mutant phenotype /// 0043269 // regulation of ion transport // inferred from direct assay /// 0045762 // positive regulation of adenylate cyclase activity // inferred from direct assay /// 0046323 // glucose import // inferred from electronic annotation /// 0046323 // glucose import // not recorded /// 0046960 // sensitization // inferred from electronic annotation /// 0046960 // sensitization // not recorded /// 0048148 // behavioral response to cocaine // inferred from mutant phenotype /// 0048148 // behavioral response to cocaine // not recorded /// 0048148 // behavioral response to cocaine // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from mutant phenotype /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from electronic annotation /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // not recorded /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // inferred from electronic annotation /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // not recorded /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from electronic annotation /// 0051968 // positive regulation of synaptic transmission, glutamatergic // not recorded /// 0060134 // prepulse inhibition // not recorded /// 0060158 // activation of phospholipase C activity by dopamine receptor signaling pathway // inferred from electronic annotation /// 0060158 // activation of phospholipase C activity by dopamine receptor signaling pathway // not recorded /// 0060291 // long-term synaptic potentiation // inferred from electronic annotation /// 0060291 // long-term synaptic potentiation // not recorded /// 0060292 // long term synaptic depression // inferred from electronic annotation /// 0060292 // long term synaptic depression // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0001588 // dopamine receptor activity, coupled via Gs // not recorded /// 0001588 // dopamine receptor activity, coupled via Gs // inferred from electronic annotation /// 0001590 // dopamine D1 receptor activity // inferred from direct assay /// 0001590 // dopamine D1 receptor activity // inferred from mutant phenotype /// 0001590 // dopamine D1 receptor activity // not recorded /// 0001590 // dopamine D1 receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from direct assay /// 0004930 // G-protein coupled receptor activity // not recorded /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004952 // dopamine receptor activity // not recorded /// 0004952 // dopamine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0035240 // dopamine binding // not recorded /// 0035240 // dopamine binding // inferred from electronic annotation 1368479_at M35077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M35077.1 /DB_XREF=gi:904224 /FEA=FLmRNA /CNT=7 /TID=Rn.24039.1 /TIER=FL /STK=1 /UG=Rn.24039 /LL=24316 /UG_GENE=Drd1a /DEF=Rattus norvegicus D1 dopamine receptor mRNA, complete cds. /PROD=D1 dopamine receptor protein /FL=gb:NM_012546.1 gb:M35077.1 M35077 dopamine receptor D1A Drd1a 24316 NM_012546 0001659 // temperature homeostasis // inferred from electronic annotation /// 0001659 // temperature homeostasis // not recorded /// 0001661 // conditioned taste aversion // inferred from electronic annotation /// 0001661 // conditioned taste aversion // not recorded /// 0001662 // behavioral fear response // inferred from electronic annotation /// 0001662 // behavioral fear response // not recorded /// 0001963 // synaptic transmission, dopaminergic // inferred from direct assay /// 0001963 // synaptic transmission, dopaminergic // inferred from mutant phenotype /// 0001963 // synaptic transmission, dopaminergic // not recorded /// 0001963 // synaptic transmission, dopaminergic // inferred from electronic annotation /// 0001964 // startle response // not recorded /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0001975 // response to amphetamine // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from mutant phenotype /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006606 // protein import into nucleus // not recorded /// 0006886 // intracellular protein transport // inferred from mutant phenotype /// 0006936 // muscle contraction // inferred from electronic annotation /// 0006936 // muscle contraction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007187 // G-protein signaling, coupled to cyclic nucleotide second messenger // inferred from electronic annotation /// 0007187 // G-protein signaling, coupled to cyclic nucleotide second messenger // not recorded /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007190 // activation of adenylate cyclase activity // inferred from direct assay /// 0007190 // activation of adenylate cyclase activity // not recorded /// 0007190 // activation of adenylate cyclase activity // inferred from electronic annotation /// 0007191 // activation of adenylate cyclase activity by dopamine receptor signaling pathway // inferred from direct assay /// 0007191 // activation of adenylate cyclase activity by dopamine receptor signaling pathway // not recorded /// 0007191 // activation of adenylate cyclase activity by dopamine receptor signaling pathway // inferred from electronic annotation /// 0007212 // dopamine receptor signaling pathway // inferred from direct assay /// 0007212 // dopamine receptor signaling pathway // inferred from mutant phenotype /// 0007212 // dopamine receptor signaling pathway // not recorded /// 0007212 // dopamine receptor signaling pathway // traceable author statement /// 0007212 // dopamine receptor signaling pathway // inferred from electronic annotation /// 0007416 // synapse assembly // inferred from expression pattern /// 0007610 // behavior // not recorded /// 0007610 // behavior // inferred from electronic annotation /// 0007612 // learning // not recorded /// 0007612 // learning // inferred from electronic annotation /// 0007613 // memory // inferred from electronic annotation /// 0007613 // memory // not recorded /// 0007617 // mating behavior // inferred from electronic annotation /// 0007617 // mating behavior // not recorded /// 0007625 // grooming behavior // inferred from electronic annotation /// 0007625 // grooming behavior // not recorded /// 0007626 // locomotory behavior // inferred from mutant phenotype /// 0007626 // locomotory behavior // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007628 // adult walking behavior // inferred from electronic annotation /// 0007628 // adult walking behavior // not recorded /// 0007631 // feeding behavior // not recorded /// 0007631 // feeding behavior // inferred from electronic annotation /// 0008306 // associative learning // inferred from mutant phenotype /// 0008306 // associative learning // not recorded /// 0008306 // associative learning // inferred from electronic annotation /// 0008542 // visual learning // inferred from mutant phenotype /// 0008542 // visual learning // not recorded /// 0008542 // visual learning // inferred from electronic annotation /// 0014002 // astrocyte development // inferred from electronic annotation /// 0014002 // astrocyte development // not recorded /// 0015872 // dopamine transport // inferred from electronic annotation /// 0015872 // dopamine transport // not recorded /// 0019226 // transmission of nerve impulse // not recorded /// 0019226 // transmission of nerve impulse // inferred from electronic annotation /// 0019228 // regulation of action potential in neuron // inferred from electronic annotation /// 0019228 // regulation of action potential in neuron // not recorded /// 0019722 // calcium-mediated signaling // inferred from direct assay /// 0021542 // dentate gyrus development // inferred from electronic annotation /// 0021542 // dentate gyrus development // not recorded /// 0021756 // striatum development // inferred from electronic annotation /// 0021756 // striatum development // not recorded /// 0021766 // hippocampus development // not recorded /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021853 // cerebral cortex GABAergic interneuron migration // inferred from electronic annotation /// 0021853 // cerebral cortex GABAergic interneuron migration // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0030336 // negative regulation of cell migration // inferred from mutant phenotype /// 0030384 // phosphoinositide metabolic process // inferred from direct assay /// 0030432 // peristalsis // inferred from electronic annotation /// 0030432 // peristalsis // not recorded /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from mutant phenotype /// 0030819 // positive regulation of cAMP biosynthetic process // not recorded /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0031161 // phosphatidylinositol catabolic process // inferred from direct assay /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0035106 // operant conditioning // inferred from mutant phenotype /// 0035106 // operant conditioning // not recorded /// 0035106 // operant conditioning // inferred from electronic annotation /// 0042053 // regulation of dopamine metabolic process // inferred from electronic annotation /// 0042053 // regulation of dopamine metabolic process // not recorded /// 0042220 // response to cocaine // not recorded /// 0042220 // response to cocaine // inferred from electronic annotation /// 0042321 // negative regulation of circadian sleep/wake cycle, sleep // inferred from direct assay /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // not recorded /// 0042755 // eating behavior // inferred from mutant phenotype /// 0043269 // regulation of ion transport // inferred from direct assay /// 0045762 // positive regulation of adenylate cyclase activity // inferred from direct assay /// 0046323 // glucose import // inferred from electronic annotation /// 0046323 // glucose import // not recorded /// 0046960 // sensitization // inferred from electronic annotation /// 0046960 // sensitization // not recorded /// 0048148 // behavioral response to cocaine // inferred from mutant phenotype /// 0048148 // behavioral response to cocaine // not recorded /// 0048148 // behavioral response to cocaine // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from mutant phenotype /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from electronic annotation /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // not recorded /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // inferred from electronic annotation /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // not recorded /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from electronic annotation /// 0051968 // positive regulation of synaptic transmission, glutamatergic // not recorded /// 0060134 // prepulse inhibition // not recorded /// 0060158 // activation of phospholipase C activity by dopamine receptor signaling pathway // inferred from electronic annotation /// 0060158 // activation of phospholipase C activity by dopamine receptor signaling pathway // not recorded /// 0060291 // long-term synaptic potentiation // inferred from electronic annotation /// 0060291 // long-term synaptic potentiation // not recorded /// 0060292 // long term synaptic depression // inferred from electronic annotation /// 0060292 // long term synaptic depression // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0001588 // dopamine receptor activity, coupled via Gs // not recorded /// 0001588 // dopamine receptor activity, coupled via Gs // inferred from electronic annotation /// 0001590 // dopamine D1 receptor activity // inferred from direct assay /// 0001590 // dopamine D1 receptor activity // inferred from mutant phenotype /// 0001590 // dopamine D1 receptor activity // not recorded /// 0001590 // dopamine D1 receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from direct assay /// 0004930 // G-protein coupled receptor activity // not recorded /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004952 // dopamine receptor activity // not recorded /// 0004952 // dopamine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0035240 // dopamine binding // not recorded /// 0035240 // dopamine binding // inferred from electronic annotation 1368480_at NM_053492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053492.1 /DB_XREF=gi:16758247 /GEN=Ctl1 /FEA=FLmRNA /CNT=7 /TID=Rn.25519.1 /TIER=FL /STK=5 /UG=Rn.25519 /LL=85254 /DEF=Rattus norvegicus transporter-like protein (Ctl1), mRNA. /PROD=transporter-like protein /FL=gb:NM_053492.1 NM_053492 solute carrier family 44, member 1 Slc44a1 85254 NM_001033852 /// NM_053492 0006810 // transport // inferred from electronic annotation /// 0015871 // choline transport // not recorded /// 0055085 // transmembrane transport // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0015220 // choline transmembrane transporter activity // not recorded 1368481_at NM_012714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012714.1 /DB_XREF=gi:6978893 /GEN=Gipr /FEA=FLmRNA /CNT=7 /TID=Rn.9676.1 /TIER=FL /STK=5 /UG=Rn.9676 /LL=25024 /DEF=Rattus norvegicus Gastric inhibitory peptide receptor (Gipr), mRNA. /PROD=gastric inhibitory peptide receptor /FL=gb:L19660.1 gb:NM_012714.1 NM_012714 gastric inhibitory polypeptide receptor Gipr 25024 NM_012714 0002029 // desensitization of G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from mutant phenotype /// 0032024 // positive regulation of insulin secretion // inferred from mutant phenotype /// 0048678 // response to axon injury // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from mutant phenotype /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from mutant phenotype /// 0070542 // response to fatty acid // inferred from expression pattern 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0016519 // gastric inhibitory peptide receptor activity // inferred from direct assay /// 0016519 // gastric inhibitory peptide receptor activity // inferred from expression pattern /// 0016519 // gastric inhibitory peptide receptor activity // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred from physical interaction 1368482_at NM_133416 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133416.1 /DB_XREF=gi:19173783 /GEN=Bcl2a1 /FEA=FLmRNA /CNT=6 /TID=Rn.19770.1 /TIER=FL /STK=5 /UG=Rn.19770 /LL=170929 /DEF=Rattus norvegicus BCL2-related protein A1 (Bcl2a1), mRNA. /PROD=BCL2-related protein A1 /FL=gb:NM_133416.1 gb:AF378332.1 NM_133416 B-cell leukemia/lymphoma 2 related protein A1d Bcl2a1d 170929 NM_133416 0001782 // B cell homeostasis // not recorded /// 0006915 // apoptosis // inferred by curator /// 0006916 // anti-apoptosis // non-traceable author statement /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded 0005515 // protein binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0051400 // BH domain binding // inferred from physical interaction 1368483_a_at NM_022953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022953.1 /DB_XREF=gi:12621129 /GEN=Slit1 /FEA=FLmRNA /CNT=5 /TID=Rn.30002.1 /TIER=FL /STK=5 /UG=Rn.30002 /LL=65047 /DEF=Rattus norvegicus Slit1 (Slit1), mRNA. /PROD=Slit1 /FL=gb:AB011530.1 gb:NM_022953.1 NM_022953 slit homolog 1 (Drosophila) Slit1 65047 NM_022953 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0008045 // motor axon guidance // inferred from electronic annotation /// 0008045 // motor axon guidance // not recorded /// 0021510 // spinal cord development // inferred from expression pattern /// 0021772 // olfactory bulb development // not recorded /// 0021772 // olfactory bulb development // inferred from electronic annotation /// 0021834 // chemorepulsion involved in embryonic olfactory bulb interneuron migration // not recorded /// 0022028 // tangential migration from the subventricular zone to the olfactory bulb // inferred from electronic annotation /// 0022028 // tangential migration from the subventricular zone to the olfactory bulb // not recorded /// 0022029 // telencephalon cell migration // not recorded /// 0022029 // telencephalon cell migration // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031290 // retinal ganglion cell axon guidance // inferred from electronic annotation /// 0031290 // retinal ganglion cell axon guidance // not recorded /// 0033563 // dorsal/ventral axon guidance // inferred from electronic annotation /// 0033563 // dorsal/ventral axon guidance // not recorded /// 0040023 // establishment of nucleus localization // inferred from electronic annotation /// 0040023 // establishment of nucleus localization // not recorded /// 0048812 // neuron projection morphogenesis // not recorded /// 0048812 // neuron projection morphogenesis // inferred from electronic annotation /// 0048843 // negative regulation of axon extension involved in axon guidance // inferred from direct assay /// 0048846 // axon extension involved in axon guidance // not recorded /// 0048846 // axon extension involved in axon guidance // inferred from electronic annotation /// 0050919 // negative chemotaxis // inferred from electronic annotation /// 0050919 // negative chemotaxis // not recorded /// 0051964 // negative regulation of synaptogenesis // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0043395 // heparan sulfate proteoglycan binding // inferred from direct assay /// 0048495 // Roundabout binding // inferred from electronic annotation /// 0048495 // Roundabout binding // not recorded 1368484_at NM_022238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022238.1 /DB_XREF=gi:11560033 /GEN=Abcb9 /FEA=FLmRNA /CNT=5 /TID=Rn.44870.1 /TIER=FL /STK=5 /UG=Rn.44870 /LL=63886 /DEF=Rattus norvegicus TAP-like ABC transporter (Abcb9), mRNA. /PROD=TAP-like ABC transporter /FL=gb:NM_022238.1 gb:AB027520.1 NM_022238 ATP-binding cassette, sub-family B (MDR/TAP), member 9 Abcb9 63886 NM_022238 0002474 // antigen processing and presentation of peptide antigen via MHC class I // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0015833 // peptide transport // not recorded /// 0015833 // peptide transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005765 // lysosomal membrane // not recorded /// 0005769 // early endosome // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0030176 // integral to endoplasmic reticulum membrane // not recorded /// 0043190 // ATP-binding cassette (ABC) transporter complex // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0015197 // peptide transporter activity // inferred from electronic annotation /// 0015440 // peptide-transporting ATPase activity // not recorded /// 0015440 // peptide-transporting ATPase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0022891 // substrate-specific transmembrane transporter activity // not recorded /// 0022891 // substrate-specific transmembrane transporter activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // traceable author statement /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation 1368485_at NM_024401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024401.1 /DB_XREF=gi:13242317 /GEN=Avil /FEA=FLmRNA /CNT=5 /TID=Rn.20161.1 /TIER=FL /STK=5 /UG=Rn.20161 /LL=79253 /DEF=Rattus norvegicus pervin (Avil), mRNA. /PROD=pervin /FL=gb:AF099929.1 gb:NM_024401.1 NM_024401 advillin Avil 79253 NM_024401 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0007399 // nervous system development // inferred from direct assay 0003779 // actin binding // traceable author statement /// 0003779 // actin binding // inferred from electronic annotation 1368486_at NM_032074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032074.1 /DB_XREF=gi:14091763 /GEN=Irs3 /FEA=FLmRNA /CNT=5 /TID=Rn.9791.1 /TIER=FL /STK=5 /UG=Rn.9791 /LL=84021 /DEF=Rattus norvegicus insulin receptor substrate-3 (Irs3), mRNA. /PROD=insulin receptor substrate-3 /FL=gb:NM_032074.1 gb:U93880.1 NM_032074 insulin receptor substrate 3 Irs3 84021 NM_032074 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005158 // insulin receptor binding // traceable author statement /// 0005158 // insulin receptor binding // inferred from electronic annotation 1368487_at NM_021696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021696.1 /DB_XREF=gi:11067430 /GEN=Pai2a /FEA=FLmRNA /CNT=5 /TID=Rn.42912.1 /TIER=FL /STK=5 /UG=Rn.42912 /LL=60325 /DEF=Rattus norvegicus plasminogen activator inhibitor 2 type A (Pai2a), mRNA. /PROD=plasminogen activator inhibitor 2 type A /FL=gb:NM_021696.1 NM_021696 serine (or cysteine) peptidase inhibitor, clade B, member 2 Serpinb2 60325 NM_021696 0042060 // wound healing // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1368488_at NM_053727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053727.1 /DB_XREF=gi:16758541 /GEN=Nfil3 /FEA=FLmRNA /CNT=5 /TID=Rn.54147.1 /TIER=FL /STK=5 /UG=Rn.54147 /LL=114519 /DEF=Rattus norvegicus nuclear factor, interleukin 3, regulated (Nfil3), mRNA. /PROD=nuclear factor, interleukin 3, regulated /FL=gb:NM_053727.1 gb:AY004663.1 NM_053727 nuclear factor, interleukin 3 regulated Nfil3 114519 NM_053727 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1368489_at NM_012953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012953.1 /DB_XREF=gi:6978850 /GEN=Fosl1 /FEA=FLmRNA /CNT=5 /TID=Rn.11306.1 /TIER=FL /STK=5 /UG=Rn.11306 /LL=25445 /DEF=Rattus norvegicus Fos-like antigen 1 (Fosl1), mRNA. /PROD=fos-like antigen 1 /FL=gb:NM_012953.1 gb:M19651.1 NM_012953 fos-like antigen 1 Fosl1 25445 NM_012953 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from expression pattern /// 0007612 // learning // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009629 // response to gravity // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0031668 // cellular response to extracellular stimulus // not recorded /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0045787 // positive regulation of cell cycle // inferred from mutant phenotype /// 0046022 // positive regulation of transcription from RNA polymerase II promoter during mitosis // inferred from direct assay /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0019717 // synaptosome // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1368490_at NM_021744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021744.1 /DB_XREF=gi:11120687 /GEN=Cd14 /FEA=FLmRNA /CNT=5 /TID=Rn.42942.1 /TIER=FL /STK=5 /UG=Rn.42942 /LL=60350 /DEF=Rattus norvegicus CD14 antigen (Cd14), mRNA. /PROD=CD14 antigen /FL=gb:AF087943.1 gb:NM_021744.1 NM_021744 CD14 molecule Cd14 60350 NM_021744 0002237 // response to molecule of bacterial origin // not recorded /// 0002237 // response to molecule of bacterial origin // inferred from electronic annotation /// 0006950 // response to stress // inferred from expression pattern /// 0006954 // inflammatory response // inferred from direct assay /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from expression pattern /// 0009408 // response to heat // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032760 // positive regulation of tumor necrosis factor production // inferred from electronic annotation /// 0032760 // positive regulation of tumor necrosis factor production // not recorded /// 0045087 // innate immune response // inferred from electronic annotation /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071222 // cellular response to lipopolysaccharide // not recorded /// 0071223 // cellular response to lipoteichoic acid // inferred from electronic annotation /// 0071223 // cellular response to lipoteichoic acid // not recorded 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded /// 0046696 // lipopolysaccharide receptor complex // inferred from expression pattern /// 0046696 // lipopolysaccharide receptor complex // traceable author statement 0001530 // lipopolysaccharide binding // inferred from electronic annotation /// 0001530 // lipopolysaccharide binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0070891 // lipoteichoic acid binding // inferred from electronic annotation /// 0070891 // lipoteichoic acid binding // not recorded 1368491_at NM_021664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021664.1 /DB_XREF=gi:11067382 /GEN=Dlad /FEA=FLmRNA /CNT=5 /TID=Rn.41640.1 /TIER=FL /STK=5 /UG=Rn.41640 /LL=59296 /DEF=Rattus norvegicus DNase II-like acid DNase (Dlad), mRNA. /PROD=DNase II-like acid DNase /FL=gb:NM_021664.1 gb:AF178974.1 NM_021664 deoxyribonuclease II beta Dnase2b 59296 NM_021664 0006259 // DNA metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005764 // lysosome // inferred from electronic annotation 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004520 // endodeoxyribonuclease activity // inferred from electronic annotation /// 0004520 // endodeoxyribonuclease activity // not recorded /// 0004531 // deoxyribonuclease II activity // inferred from direct assay /// 0004531 // deoxyribonuclease II activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1368492_at NM_031644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031644.1 /DB_XREF=gi:13928887 /GEN=Ptgds2 /FEA=FLmRNA /CNT=5 /TID=Rn.10837.1 /TIER=FL /STK=5 /UG=Rn.10837 /LL=58962 /DEF=Rattus norvegicus prostaglandin D2 synthase 2, hematopoietic (Ptgds2), mRNA. /PROD=prostaglandin D2 synthase 2, hematopoietic /FL=gb:NM_031644.1 gb:D82071.1 NM_031644 hematopoietic prostaglandin D synthase Hpgds 58962 NM_031644 0001516 // prostaglandin biosynthetic process // traceable author statement /// 0001516 // prostaglandin biosynthetic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006693 // prostaglandin metabolic process // not recorded /// 0006693 // prostaglandin metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004364 // glutathione transferase activity // inferred from electronic annotation /// 0004667 // prostaglandin-D synthase activity // not recorded /// 0004667 // prostaglandin-D synthase activity // traceable author statement /// 0004667 // prostaglandin-D synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1368493_at NM_053771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053771.1 /DB_XREF=gi:16758607 /GEN=Lim2 /FEA=FLmRNA /CNT=5 /TID=Rn.9688.1 /TIER=FL /STK=5 /UG=Rn.9688 /LL=114903 /DEF=Rattus norvegicus lens intrinsic membrane protein 2 (19 kDa) (Lim2), mRNA. /PROD=lens intrinsic membrane protein 2 (19 kDa) /FL=gb:M87053.1 gb:L04191.1 gb:NM_053771.1 NM_053771 lens intrinsic membrane protein 2 Lim2 114903 NM_053771 0002088 // lens development in camera-type eye // inferred from electronic annotation /// 0002088 // lens development in camera-type eye // not recorded /// 0043010 // camera-type eye development // not recorded /// 0043010 // camera-type eye development // inferred from electronic annotation 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay 0005212 // structural constituent of eye lens // inferred from electronic annotation 1368494_at NM_053822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053822.1 /DB_XREF=gi:16758671 /GEN=S100a8 /FEA=FLmRNA /CNT=5 /TID=Rn.31839.1 /TIER=FL /STK=5 /UG=Rn.31839 /LL=116547 /DEF=Rattus norvegicus S100 calcium-binding protein A8 (calgranulin A) (S100a8), mRNA. /PROD=S100 calcium-binding protein A8 (calgranulin A) /FL=gb:NM_053822.1 gb:L18891.1 NM_053822 S100 calcium binding protein A8 S100a8 116547 NM_053822 0002526 // acute inflammatory response // inferred from expression pattern /// 0002544 // chronic inflammatory response // inferred from expression pattern /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // non-traceable author statement /// 0010043 // response to zinc ion // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0042060 // wound healing // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368495_at NM_013413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013413.1 /DB_XREF=gi:7242202 /GEN=Rln1 /FEA=FLmRNA /CNT=8 /TID=Rn.9830.1 /TIER=FL /STK=5 /UG=Rn.9830 /LL=25616 /DEF=Rattus norvegicus Relaxin 1 (H1) (Rln1), mRNA. /PROD=relaxin 1 (H1) /FL=gb:NM_013413.1 NM_013413 relaxin 1 Rln1 25616 NM_013413 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from genetic interaction /// 0010749 // regulation of nitric oxide mediated signal transduction // inferred from direct assay /// 0010749 // regulation of nitric oxide mediated signal transduction // not recorded /// 0010749 // regulation of nitric oxide mediated signal transduction // inferred from electronic annotation /// 0048589 // developmental growth // not recorded /// 0048589 // developmental growth // inferred from electronic annotation /// 0050878 // regulation of body fluid levels // traceable author statement /// 0060736 // prostate gland growth // inferred from electronic annotation /// 0060736 // prostate gland growth // not recorded 0005576 // extracellular region // inferred from electronic annotation 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005179 // hormone activity // traceable author statement /// 0005179 // hormone activity // inferred from electronic annotation 1368496_at NM_024126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024126.1 /DB_XREF=gi:13162295 /GEN=Odf1 /FEA=FLmRNA /CNT=7 /TID=Rn.9850.1 /TIER=FL /STK=5 /UG=Rn.9850 /LL=24610 /DEF=Rattus norvegicus Sperm outer dense fiber major protein 1 (Odf1), mRNA. /PROD=sperm outer dense fiber major protein 1 /FL=gb:M58677.1 gb:NM_024126.1 gb:M88759.1 NM_024126 outer dense fiber of sperm tails 1 Odf1 24610 NM_024126 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0001520 // outer dense fiber // inferred from electronic annotation /// 0001520 // outer dense fiber // not recorded 1368497_at NM_012833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012833.1 /DB_XREF=gi:6978668 /GEN=Abcc2 /FEA=FLmRNA /CNT=6 /TID=Rn.10265.1 /TIER=FL /STK=5 /UG=Rn.10265 /LL=25303 /DEF=Rattus norvegicus ATP-binding cassette, sub-family C (CFTRMRP), member 2 (Abcc2), mRNA. /PROD=ATP-binding cassette, sub-family C (CFTRMRP),member 2 /FL=gb:L49379.1 gb:NM_012833.1 gb:D86086.1 NM_012833 ATP-binding cassette, sub-family C (CFTR/MRP), member 2 Abcc2 25303 NM_012833 0006810 // transport // inferred from electronic annotation /// 0006855 // drug transmembrane transport // inferred from mutant phenotype /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0009408 // response to heat // inferred from expression pattern /// 0015711 // organic anion transport // traceable author statement /// 0015732 // prostaglandin transport // inferred from mutant phenotype /// 0030644 // cellular chloride ion homeostasis // inferred from direct assay /// 0031427 // response to methotrexate // inferred from expression pattern /// 0042493 // response to drug // inferred from direct assay /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0046685 // response to arsenic // inferred from expression pattern /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070327 // thyroid hormone transport // inferred from mutant phenotype 0005624 // membrane fraction // not recorded /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0046581 // intercellular canaliculus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008514 // organic anion transmembrane transporter activity // traceable author statement /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 1368498_a_at NM_030837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030837.1 /DB_XREF=gi:13540639 /GEN=Slc21a4 /FEA=FLmRNA /CNT=7 /TID=Rn.10583.1 /TIER=FL /STK=5 /UG=Rn.10583 /LL=80899 /DEF=Rattus norvegicus kidney specific organic anion transporter (Slc21a4), mRNA. /PROD=kidney specific organic anion transporter /FL=gb:AF445993.1 gb:D79981.1 gb:NM_030837.1 gb:AF446006.1 NM_030837 kidney specific organic anion transporter Slc21a4 80899 NM_030837 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015711 // organic anion transport // traceable author statement /// 0015893 // drug transport // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0008514 // organic anion transmembrane transporter activity // traceable author statement /// 0015350 // methotrexate transporter activity // inferred from direct assay 1368499_at NM_130735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130735.1 /DB_XREF=gi:18543332 /GEN=Sycp2 /FEA=FLmRNA /CNT=5 /TID=Rn.14527.1 /TIER=FL /STK=5 /UG=Rn.14527 /LL=83820 /DEF=Rattus norvegicus synaptonemal complex protein 2 (Sycp2), mRNA. /PROD=synaptonemal complex protein 2 /FL=gb:NM_130735.1 NM_130735 synaptonemal complex protein 2 Sycp2 83820 NM_130735 0006915 // apoptosis // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007126 // meiosis // inferred from electronic annotation /// 0007140 // male meiosis // not recorded /// 0007143 // female meiosis // not recorded /// 0009566 // fertilization // not recorded /// 0009887 // organ morphogenesis // not recorded /// 0048808 // male genitalia morphogenesis // not recorded /// 0051301 // cell division // inferred from electronic annotation 0000795 // synaptonemal complex // inferred from direct assay /// 0000795 // synaptonemal complex // not recorded /// 0000800 // lateral element // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1368500_a_at NM_019224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019224.1 /DB_XREF=gi:9507050 /GEN=Rgs9 /FEA=FLmRNA /CNT=5 /TID=Rn.10903.1 /TIER=FL /STK=5 /UG=Rn.10903 /LL=29481 /DEF=Rattus norvegicus regulator of G-protein signaling 9 (Rgs9), mRNA. /PROD=regulator of G-protein signaling 9 /FL=gb:AB019145.1 gb:NM_019224.1 gb:AF071475.1 NM_019224 regulator of G-protein signaling 9 Rgs9 29481 NM_019224 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007212 // dopamine receptor signaling pathway // inferred from mutant phenotype /// 0007399 // nervous system development // inferred from expression pattern /// 0007601 // visual perception // inferred from electronic annotation /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0043547 // positive regulation of GTPase activity // inferred from direct assay /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0050896 // response to stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0032403 // protein complex binding // inferred from direct assay 1368501_s_at NM_019323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019323.1 /DB_XREF=gi:11024705 /GEN=Mcpt9 /FEA=FLmRNA /CNT=5 /TID=Rn.10651.1 /TIER=FL /STK=5 /UG=Rn.10651 /LL=54272 /DEF=Rattus norvegicus mast cell protease 9 (Mcpt9), mRNA. /PROD=mast cell protease 9 /FL=gb:NM_019323.1 gb:U72143.1 NM_019323 mast cell protease 10 /// mast cell protease 8 /// mast cell protease 8-like 2 /// mast cell protease 9 Mcpt10 /// Mcpt8 /// Mcpt8l2 /// Mcpt9 29269 /// 408240 /// 54269 /// 54272 NM_001135010 /// NM_017146 /// NM_019323 /// NM_021598 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1368502_at NM_012849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012849.1 /DB_XREF=gi:6978874 /GEN=Gas /FEA=FLmRNA /CNT=5 /TID=Rn.9754.1 /TIER=FL /STK=5 /UG=Rn.9754 /LL=25320 /DEF=Rattus norvegicus Gastrin (Gas), mRNA. /PROD=gastrin /FL=gb:M38653.1 gb:NM_012849.1 NM_012849 gastrin Gast 25320 NM_012849 0007165 // signal transduction // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from direct assay /// 0005179 // hormone activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368503_at AA859496 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859496 /DB_XREF=gi:4230042 /DB_XREF=UI-R-E0-bv-g-08-0-UI.s1 /CLONE=UI-R-E0-bv-g-08-0-UI /FEA=FLmRNA /CNT=40 /TID=Rn.28195.1 /TIER=Stack /STK=23 /UG=Rn.28195 /LL=29244 /UG_GENE=Gch /UG_TITLE=GTP cyclohydrolase 1 /FL=gb:NM_024356.1 gb:M58364.1 AA859496 GTP cyclohydrolase 1 Gch1 29244 NM_024356 0006184 // GTP catabolic process // not recorded /// 0006461 // protein complex assembly // inferred from direct assay /// 0006729 // tetrahydrobiopterin biosynthetic process // not recorded /// 0006729 // tetrahydrobiopterin biosynthetic process // traceable author statement /// 0006729 // tetrahydrobiopterin biosynthetic process // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008217 // regulation of blood pressure // not recorded /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0014916 // regulation of lung blood pressure // inferred from electronic annotation /// 0014916 // regulation of lung blood pressure // not recorded /// 0032496 // response to lipopolysaccharide // not recorded /// 0034341 // response to interferon-gamma // not recorded /// 0034612 // response to tumor necrosis factor // not recorded /// 0042311 // vasodilation // inferred from mutant phenotype /// 0042416 // dopamine biosynthetic process // not recorded /// 0042559 // pteridine and derivative biosynthetic process // not recorded /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0046654 // tetrahydrofolate biosynthetic process // inferred from electronic annotation /// 0048265 // response to pain // inferred from direct assay /// 0050884 // neuromuscular process controlling posture // not recorded /// 0051000 // positive regulation of nitric-oxide synthase activity // not recorded /// 0051066 // dihydrobiopterin metabolic process // inferred from direct assay /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051260 // protein homooligomerization // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0031410 // cytoplasmic vesicle // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0043234 // protein complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003934 // GTP cyclohydrolase I activity // inferred from direct assay /// 0003934 // GTP cyclohydrolase I activity // not recorded /// 0003934 // GTP cyclohydrolase I activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0008270 // zinc ion binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030742 // GTP-dependent protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from direct assay 1368504_at NM_012857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012857.1 /DB_XREF=gi:6981143 /GEN=Lamp1 /FEA=FLmRNA /CNT=41 /TID=Rn.40177.1 /TIER=FL /STK=4 /UG=Rn.40177 /LL=25328 /DEF=Rattus norvegicus Lysosomal associated membrane protein 1 (120 kDa) (Lamp1), mRNA. /PROD=lysosomal associated membrane protein 1 (120kDa) /FL=gb:NM_012857.1 gb:M34959.1 NM_012857 lysosomal-associated membrane protein 1 Lamp1 25328 NM_012857 0006914 // autophagy // inferred from expression pattern 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005770 // late endosome // inferred from electronic annotation /// 0005771 // multivesicular body // inferred from electronic annotation /// 0005771 // multivesicular body // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042383 // sarcolemma // not recorded /// 0042470 // melanosome // inferred from electronic annotation /// 0042470 // melanosome // not recorded 0005515 // protein binding // not recorded 1368505_at NM_017214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017214.1 /DB_XREF=gi:8394182 /GEN=Rgs4 /FEA=FLmRNA /CNT=42 /TID=Rn.11065.1 /TIER=FL /STK=4 /UG=Rn.11065 /LL=29480 /DEF=Rattus norvegicus regulator of G-protein signaling 4 (Rgs4), mRNA. /PROD=regulator of G-protein signaling 4 /FL=gb:AF117211.1 gb:U27767.1 gb:NM_017214.1 NM_017214 regulator of G-protein signaling 4 Rgs4 29480 NM_017214 0009968 // negative regulation of signal transduction // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation 1368506_at U27767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U27767.1 /DB_XREF=gi:1216370 /FEA=FLmRNA /CNT=42 /TID=Rn.11065.1 /TIER=FL /STK=1 /UG=Rn.11065 /LL=29480 /UG_GENE=Rgs4 /DEF=Rattus norvegicus RGP4 mRNA, complete cds. /PROD=RGP4 /FL=gb:AF117211.1 gb:U27767.1 gb:NM_017214.1 U27767 regulator of G-protein signaling 4 Rgs4 29480 NM_017214 0009968 // negative regulation of signal transduction // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation 1368507_at NM_017280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017280.1 /DB_XREF=gi:8394065 /GEN=Psma3 /FEA=FLmRNA /CNT=40 /TID=Rn.3997.1 /TIER=FL /STK=4 /UG=Rn.3997 /LL=29670 /DEF=Rattus norvegicus proteasome (prosome, macropain) subunit, alpha type 3 (Psma3), mRNA. /PROD=proteasome (prosome, macropain) subunit, alphatype 3 /FL=gb:NM_017280.1 gb:M58593.1 NM_017280 proteasome (prosome, macropain) subunit, alpha type 3 /// proteasome subunit alpha type 3-like Psma3 /// Psma3l 29670 /// 408248 NM_001004094 /// NM_017280 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005839 // proteasome core complex // not recorded /// 0005839 // proteasome core complex // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded /// 0019773 // proteasome core complex, alpha-subunit complex // inferred from electronic annotation 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1368508_at BI294912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294912 /DB_XREF=gi:14957830 /DB_XREF=UI-R-DK0-ced-e-12-0-UI.s1 /CLONE=UI-R-DK0-ced-e-12-0-UI /FEA=FLmRNA /CNT=40 /TID=Rn.3997.1 /TIER=Stack /STK=9 /UG=Rn.3997 /LL=29670 /UG_GENE=Psma3 /UG_TITLE=proteasome (prosome, macropain) subunit, alpha type 3 /FL=gb:NM_017280.1 gb:M58593.1 BI294912 1368509_at NM_053618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053618.1 /DB_XREF=gi:16758415 /GEN=Bbs2 /FEA=FLmRNA /CNT=15 /TID=Rn.15987.1 /TIER=FL /STK=4 /UG=Rn.15987 /LL=113948 /DEF=Rattus norvegicus Bardet-Biedl syndrome 2 (human) (Bbs2), mRNA. /PROD=Bardet-Biedl syndrome 2 (human) /FL=gb:AF342738.1 gb:NM_053618.1 NM_053618 Bardet-Biedl syndrome 2 Bbs2 113948 NM_053618 0007288 // sperm axoneme assembly // inferred from electronic annotation /// 0007288 // sperm axoneme assembly // not recorded /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0021756 // striatum development // inferred from electronic annotation /// 0021756 // striatum development // not recorded /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0021987 // cerebral cortex development // not recorded /// 0030534 // adult behavior // inferred from electronic annotation /// 0030534 // adult behavior // not recorded /// 0033365 // protein localization in organelle // inferred from electronic annotation /// 0033365 // protein localization in organelle // not recorded /// 0035058 // sensory cilium assembly // not recorded /// 0040015 // negative regulation of multicellular organism growth // inferred from electronic annotation /// 0040015 // negative regulation of multicellular organism growth // not recorded /// 0042384 // cilium assembly // not recorded /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045444 // fat cell differentiation // not recorded /// 0045494 // photoreceptor cell maintenance // inferred from electronic annotation /// 0045494 // photoreceptor cell maintenance // not recorded /// 0048854 // brain morphogenesis // inferred from electronic annotation /// 0048854 // brain morphogenesis // not recorded /// 0060271 // cilium morphogenesis // inferred from electronic annotation /// 0060271 // cilium morphogenesis // not recorded /// 0060296 // regulation of cilium beat frequency involved in ciliary motility // inferred from electronic annotation /// 0060296 // regulation of cilium beat frequency involved in ciliary motility // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0005932 // microtubule basal body // inferred from electronic annotation /// 0005932 // microtubule basal body // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031514 // motile secondary cilium // inferred from electronic annotation /// 0031514 // motile secondary cilium // not recorded /// 0034464 // BBSome // inferred from electronic annotation /// 0034464 // BBSome // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0060170 // cilium membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368510_at NM_012764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012764.1 /DB_XREF=gi:6978876 /GEN=Gata1 /FEA=FLmRNA /CNT=15 /TID=Rn.10024.1 /TIER=FL /STK=4 /UG=Rn.10024 /LL=25172 /DEF=Rattus norvegicus GATA-binding protein 1 (globin transcription factor 1) (Gata1), mRNA. /PROD=GATA-binding protein 1 (globin transcriptionfactor 1) /FL=gb:D13518.1 gb:NM_012764.1 NM_012764 GATA binding protein 1 Gata1 25172 NM_012764 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0060009 // Sertoli cell development // inferred from expression pattern /// 0071320 // cellular response to cAMP // inferred from expression pattern /// 0071372 // cellular response to follicle-stimulating hormone stimulus // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368511_at NM_133303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133303.1 /DB_XREF=gi:18959241 /GEN=Bhlhb3 /FEA=FLmRNA /CNT=15 /TID=Rn.10784.1 /TIER=FL /STK=4 /UG=Rn.10784 /LL=117095 /DEF=Rattus norvegicus basic helix-loop-helix domain containing, class B, 3 (Bhlhb3), mRNA. /PROD=basic helix-loop-helix domain containing, classB, 3 /FL=gb:AF009329.1 gb:NM_133303.1 NM_133303 basic helix-loop-helix family, member e41 Bhlhe41 117095 XM_001074956 /// XM_002729454 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007399 // nervous system development // non-traceable author statement /// 0007623 // circadian rhythm // not recorded /// 0009649 // entrainment of circadian clock // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048168 // regulation of neuronal synaptic plasticity // inferred from expression pattern /// 0048168 // regulation of neuronal synaptic plasticity // non-traceable author statement 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1368512_a_at AF214568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF214568.1 /DB_XREF=gi:7159084 /GEN=Enpep /FEA=FLmRNA /CNT=13 /TID=Rn.53979.1 /TIER=FL /STK=4 /UG=Rn.53979 /LL=64017 /DEF=Rattus norvegicus aminopeptidase A (Enpep) mRNA, complete cds. /PROD=aminopeptidase A /FL=gb:AF214568.1 gb:AF146044.1 gb:NM_022251.1 AF214568 glutamyl aminopeptidase Enpep 64017 NM_022251 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006725 // cellular aromatic compound metabolic process // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0012506 // vesicle membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031983 // vesicle lumen // inferred from direct assay 0004177 // aminopeptidase activity // inferred from direct assay /// 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1368513_at AW144216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144216 /DB_XREF=gi:6164115 /DB_XREF=EST294512 /CLONE=RGICL51 /FEA=FLmRNA /CNT=13 /TID=Rn.53979.1 /TIER=ConsEnd /STK=0 /UG=Rn.53979 /LL=64017 /UG_GENE=Enpep /UG_TITLE=aminopeptidase A /FL=gb:AF214568.1 gb:AF146044.1 gb:NM_022251.1 AW144216 glutamyl aminopeptidase Enpep 64017 NM_022251 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006725 // cellular aromatic compound metabolic process // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0012506 // vesicle membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031983 // vesicle lumen // inferred from direct assay 0004177 // aminopeptidase activity // inferred from direct assay /// 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1368514_at NM_013198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013198.1 /DB_XREF=gi:6981179 /GEN=Maob /FEA=FLmRNA /CNT=10 /TID=Rn.6656.1 /TIER=FL /STK=4 /UG=Rn.6656 /LL=25750 /DEF=Rattus norvegicus Monoamine oxidase B (Maob), mRNA. /PROD=monoamine oxidase B /FL=gb:NM_013198.1 gb:M23601.1 NM_013198 monoamine oxidase B Maob 25750 NM_013198 0009636 // response to toxin // inferred from expression pattern /// 0010044 // response to aluminum ion // inferred from expression pattern /// 0010269 // response to selenium ion // inferred from expression pattern /// 0014063 // negative regulation of serotonin secretion // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0042135 // neurotransmitter catabolic process // inferred from direct assay /// 0042135 // neurotransmitter catabolic process // traceable author statement /// 0042493 // response to drug // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0045964 // positive regulation of dopamine metabolic process // inferred from mutant phenotype /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005741 // mitochondrial outer membrane // not recorded /// 0005741 // mitochondrial outer membrane // traceable author statement /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008131 // primary amine oxidase activity // inferred from direct assay /// 0008131 // primary amine oxidase activity // not recorded /// 0008131 // primary amine oxidase activity // traceable author statement /// 0008131 // primary amine oxidase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0050660 // FAD or FADH2 binding // inferred from direct assay 1368515_at NM_053927 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053927.1 /DB_XREF=gi:16758807 /GEN=Epb4.1l3 /FEA=FLmRNA /CNT=22 /TID=Rn.19026.1 /TIER=FL /STK=4 /UG=Rn.19026 /LL=116724 /DEF=Rattus norvegicus erythrocyte protein band 4.1-like 3 (Epb4.1l3), mRNA. /PROD=erythrocyte protein band 4.1-like 3 /FL=gb:NM_053927.1 gb:AB032827.1 NM_053927 erythrocyte protein band 4.1-like 3 Epb4.1l3 116724 NM_053927 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0005911 // cell-cell junction // inferred from sequence or structural similarity /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0019898 // extrinsic to membrane // inferred from electronic annotation /// 0033270 // paranode region of axon // inferred from electronic annotation /// 0033270 // paranode region of axon // not recorded /// 0044224 // juxtaparanode region of axon // inferred from electronic annotation /// 0044224 // juxtaparanode region of axon // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 1368516_at NM_012763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012763.1 /DB_XREF=gi:6981445 /GEN=Ptpra /FEA=FLmRNA /CNT=17 /TID=Rn.18043.1 /TIER=FL /STK=4 /UG=Rn.18043 /LL=25167 /DEF=Rattus norvegicus Protein tyrosine phosphatase, receptor type, A (Ptpra), mRNA. /PROD=protein tyrosine phosphatase, receptor type, A /FL=gb:NM_012763.1 gb:L01702.1 NM_012763 protein tyrosine phosphatase, receptor type, A Ptpra 25167 NM_012763 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // not recorded /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0048709 // oligodendrocyte differentiation // inferred from expression pattern /// 0048714 // positive regulation of oligodendrocyte differentiation // inferred from mutant phenotype 0001950 // plasma membrane enriched fraction // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay 1368517_at NM_053358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053358.1 /DB_XREF=gi:16758085 /GEN=Ssdp /FEA=FLmRNA /CNT=15 /TID=Rn.18070.1 /TIER=FL /STK=4 /UG=Rn.18070 /LL=84354 /DEF=Rattus norvegicus sequence-specific single-stranded-DNA-binding protein (Ssdp), mRNA. /PROD=sequence-specific single-stranded-DNA-bindingprotein /FL=gb:AF121893.1 gb:NM_053358.1 NM_053358 single stranded DNA binding protein 3 Ssbp3 84354 NM_053358 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // traceable author statement /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // traceable author statement /// 0030528 // transcription regulator activity // inferred from electronic annotation 1368518_at NM_012523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012523.1 /DB_XREF=gi:6978632 /GEN=Cd53 /FEA=FLmRNA /CNT=11 /TID=Rn.31988.1 /TIER=FL /STK=4 /UG=Rn.31988 /LL=24251 /DEF=Rattus norvegicus Leukocyte antigen (Ox-44) (Cd53), mRNA. /PROD=leukocyte antigen (Ox-44) /FL=gb:NM_012523.1 gb:M57276.1 NM_012523 Cd53 molecule Cd53 24251 NM_012523 0040008 // regulation of growth // non-traceable author statement 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1368519_at NM_012620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012620.1 /DB_XREF=gi:6981331 /GEN=Serpine1 /FEA=FLmRNA /CNT=10 /TID=Rn.29367.1 /TIER=FL /STK=4 /UG=Rn.29367 /LL=24617 /DEF=Rattus norvegicus serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 (Serpine1), mRNA. /PROD=serine (or cysteine) proteinase inhibitor, cladeE (nexin, plasminogen activator inhibitor type 1), member1 /FL=gb:NM_012620.1 gb:M24067.1 NM_012620 serine (or cysteine) peptidase inhibitor, clade E, member 1 Serpine1 24617 NM_012620 0000302 // response to reactive oxygen species // inferred from expression pattern /// 0001300 // chronological cell aging // inferred from electronic annotation /// 0001300 // chronological cell aging // not recorded /// 0010469 // regulation of receptor activity // inferred from electronic annotation /// 0010469 // regulation of receptor activity // not recorded /// 0010757 // negative regulation of plasminogen activation // inferred from electronic annotation /// 0010757 // negative regulation of plasminogen activation // not recorded /// 0010951 // negative regulation of endopeptidase activity // inferred by curator /// 0010951 // negative regulation of endopeptidase activity // not recorded /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0014912 // negative regulation of smooth muscle cell migration // inferred from electronic annotation /// 0014912 // negative regulation of smooth muscle cell migration // not recorded /// 0030194 // positive regulation of blood coagulation // not recorded /// 0030194 // positive regulation of blood coagulation // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // not recorded /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0032757 // positive regulation of interleukin-8 production // inferred from electronic annotation /// 0032757 // positive regulation of interleukin-8 production // not recorded /// 0033629 // negative regulation of cell adhesion mediated by integrin // inferred from electronic annotation /// 0033629 // negative regulation of cell adhesion mediated by integrin // not recorded /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0035491 // positive regulation of leukotriene production involved in inflammatory response // inferred from electronic annotation /// 0035491 // positive regulation of leukotriene production involved in inflammatory response // not recorded /// 0042060 // wound healing // inferred from mutant phenotype /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042246 // tissue regeneration // inferred from expression pattern /// 0042593 // glucose homeostasis // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045765 // regulation of angiogenesis // not recorded /// 0045765 // regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0045861 // negative regulation of proteolysis // traceable author statement /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from mutant phenotype /// 0048260 // positive regulation of receptor-mediated endocytosis // not recorded /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // not recorded /// 0050729 // positive regulation of inflammatory response // inferred from electronic annotation /// 0050820 // positive regulation of coagulation // inferred from mutant phenotype /// 0050829 // defense response to Gram-negative bacterium // inferred from electronic annotation /// 0050829 // defense response to Gram-negative bacterium // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051918 // negative regulation of fibrinolysis // inferred from electronic annotation /// 0051918 // negative regulation of fibrinolysis // not recorded /// 0055093 // response to hyperoxia // inferred from expression pattern /// 0061044 // negative regulation of vascular wound healing // inferred from electronic annotation /// 0061044 // negative regulation of vascular wound healing // not recorded /// 0070887 // cellular response to chemical stimulus // inferred from electronic annotation /// 0070887 // cellular response to chemical stimulus // not recorded /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071222 // cellular response to lipopolysaccharide // not recorded /// 0071258 // cellular response to gravity // inferred from expression pattern /// 0090026 // positive regulation of monocyte chemotaxis // inferred from electronic annotation /// 0090026 // positive regulation of monocyte chemotaxis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0002020 // protease binding // inferred from electronic annotation /// 0002020 // protease binding // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // not recorded /// 0004867 // serine-type endopeptidase inhibitor activity // traceable author statement /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1368520_at NM_012737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012737.1 /DB_XREF=gi:8392908 /GEN=Apoa4 /FEA=FLmRNA /CNT=9 /TID=Rn.15739.1 /TIER=FL /STK=4 /UG=Rn.15739 /LL=25080 /DEF=Rattus norvegicus Apolipoprotein A-IV (Apoa4), mRNA. /PROD=apolipoprotein A-IV /FL=gb:NM_012737.1 gb:M00002.1 NM_012737 apolipoprotein A-IV Apoa4 25080 NM_012737 0002227 // innate immune response in mucosa // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // not recorded /// 0006869 // lipid transport // traceable author statement /// 0006869 // lipid transport // inferred from electronic annotation /// 0006982 // response to lipid hydroperoxide // not recorded /// 0007159 // leukocyte cell-cell adhesion // not recorded /// 0008203 // cholesterol metabolic process // not recorded /// 0010873 // positive regulation of cholesterol esterification // not recorded /// 0010898 // positive regulation of triglyceride catabolic process // not recorded /// 0014012 // peripheral nervous system axon regeneration // inferred from expression pattern /// 0019430 // removal of superoxide radicals // not recorded /// 0030300 // regulation of intestinal cholesterol absorption // not recorded /// 0032094 // response to food // traceable author statement /// 0032374 // regulation of cholesterol transport // not recorded /// 0033344 // cholesterol efflux // not recorded /// 0033700 // phospholipid efflux // not recorded /// 0034372 // very-low-density lipoprotein particle remodeling // not recorded /// 0034445 // negative regulation of plasma lipoprotein oxidation // not recorded /// 0042157 // lipoprotein metabolic process // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0042744 // hydrogen peroxide catabolic process // not recorded /// 0043691 // reverse cholesterol transport // not recorded /// 0044240 // multicellular organismal lipid catabolic process // not recorded /// 0045723 // positive regulation of fatty acid biosynthetic process // not recorded /// 0046470 // phosphatidylcholine metabolic process // not recorded /// 0051006 // positive regulation of lipoprotein lipase activity // not recorded /// 0055088 // lipid homeostasis // not recorded /// 0065005 // protein-lipid complex assembly // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // not recorded /// 0005788 // endoplasmic reticulum lumen // not recorded /// 0009986 // cell surface // not recorded /// 0034361 // very-low-density lipoprotein particle // not recorded /// 0034364 // high-density lipoprotein particle // inferred from electronic annotation /// 0034364 // high-density lipoprotein particle // not recorded /// 0042627 // chylomicron // inferred from direct assay /// 0042627 // chylomicron // not recorded /// 0042627 // chylomicron // inferred from electronic annotation 0005507 // copper ion binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0008289 // lipid binding // not recorded /// 0016209 // antioxidant activity // not recorded /// 0017127 // cholesterol transporter activity // not recorded /// 0031210 // phosphatidylcholine binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043499 // eukaryotic cell surface binding // not recorded /// 0060228 // phosphatidylcholine-sterol O-acyltransferase activator activity // not recorded 1368521_at NM_031670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031670.1 /DB_XREF=gi:13928927 /GEN=Kdap /FEA=FLmRNA /CNT=9 /TID=Rn.17097.1 /TIER=FL /STK=4 /UG=Rn.17097 /LL=60575 /DEF=Rattus norvegicus kidney-derived aspartic protease-like protein (Kdap), mRNA. /PROD=kidney-derived aspartic protease-like protein /FL=gb:NM_031670.1 NM_031670 napsin A aspartic peptidase Napsa 60575 NM_031670 0006508 // proteolysis // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1368522_at NM_031340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031340.1 /DB_XREF=gi:13786173 /GEN=Timeless /FEA=FLmRNA /CNT=14 /TID=Rn.31755.1 /TIER=FL /STK=4 /UG=Rn.31755 /LL=83508 /DEF=Rattus norvegicus timeless (Drosophila) homolog (Timeless), mRNA. /PROD=timeless (Drosophila) homolog /FL=gb:NM_031340.1 gb:AB019576.1 NM_031340 timeless homolog (Drosophila) Timeless 83508 NM_031340 0001658 // branching involved in ureteric bud morphogenesis // inferred from mutant phenotype /// 0001822 // kidney development // inferred from mutant phenotype /// 0002009 // morphogenesis of an epithelium // inferred from electronic annotation /// 0002009 // morphogenesis of an epithelium // inferred from expression pattern /// 0002009 // morphogenesis of an epithelium // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007623 // circadian rhythm // not recorded /// 0007623 // circadian rhythm // inferred from sequence or structural similarity /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0033261 // regulation of S phase // inferred from electronic annotation /// 0033261 // regulation of S phase // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0042753 // positive regulation of circadian rhythm // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from electronic annotation /// 0000790 // nuclear chromatin // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1368523_at NM_013219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013219.1 /DB_XREF=gi:6978598 /GEN=CAPS /FEA=FLmRNA /CNT=13 /TID=Rn.9993.1 /TIER=FL /STK=4 /UG=Rn.9993 /LL=26989 /DEF=Rattus norvegicus Ca2+-dependent activator protein (CAPS), mRNA. /PROD=Ca2+-dependent activator protein /FL=gb:U16802.1 gb:NM_013219.1 NM_013219 Ca++-dependent secretion activator Cadps 26989 NM_013219 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // not recorded /// 0006887 // exocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016050 // vesicle organization // not recorded /// 0045055 // regulated secretory pathway // traceable author statement /// 0045956 // positive regulation of calcium ion-dependent exocytosis // inferred from mutant phenotype /// 0050432 // catecholamine secretion // not recorded 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0045202 // synapse // inferred from electronic annotation 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368524_at NM_012856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012856.1 /DB_XREF=gi:6981121 /GEN=Kcnc1 /FEA=FLmRNA /CNT=12 /TID=Rn.33095.1 /TIER=FL /STK=4 /UG=Rn.33095 /LL=25327 /DEF=Rattus norvegicus Potassium channel gene 1 (Kcnc1), mRNA. /PROD=potassium channel gene 1 (alternative splicngproduct described in Luneau et al 1991) /FL=gb:M68880.1 gb:NM_012856.1 NM_012856 potassium voltage gated channel, Shaw-related subfamily, member 1 Kcnc1 25327 NM_012856 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1368525_at NM_024001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024001.1 /DB_XREF=gi:13027472 /GEN=RPT /FEA=FLmRNA /CNT=12 /TID=Rn.33647.1 /TIER=FL /STK=4 /UG=Rn.33647 /LL=79032 /DEF=Rattus norvegicus RPT protein similar to yeast MRS2 (RPT), mRNA. /PROD=RPT protein similar to yeast MRS2 /FL=gb:AF288289.1 gb:NM_024001.1 NM_024001 MRS2 magnesium homeostasis factor homolog (S. cerevisiae) Mrs2 79032 NM_024001 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1368526_at NM_031350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031350.1 /DB_XREF=gi:13786193 /GEN=Pex3 /FEA=FLmRNA /CNT=12 /TID=Rn.11773.1 /TIER=FL /STK=4 /UG=Rn.11773 /LL=83519 /DEF=Rattus norvegicus peroxisomal biogenesis factor 3 (Pex3), mRNA. /PROD=peroxisomal biogenesis factor 3 /FL=gb:AB035306.1 gb:NM_031350.1 NM_031350 peroxisomal biogenesis factor 3 Pex3 83519 NM_031350 0007031 // peroxisome organization // inferred from mutant phenotype /// 0007031 // peroxisome organization // not recorded /// 0007031 // peroxisome organization // inferred from electronic annotation /// 0016557 // peroxisome membrane biogenesis // inferred from direct assay /// 0045046 // protein import into peroxisome membrane // inferred from electronic annotation /// 0045046 // protein import into peroxisome membrane // not recorded 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // not recorded /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0005779 // integral to peroxisomal membrane // inferred from electronic annotation /// 0005779 // integral to peroxisomal membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1368527_at U03389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U03389.1 /DB_XREF=gi:415639 /FEA=FLmRNA /CNT=11 /TID=Rn.44369.1 /TIER=FL /STK=4 /UG=Rn.44369 /LL=29527 /UG_GENE=Ptgs2 /DEF=Rattus norvegicus cyclooxygenase 2 mRNA, complete cds. /PROD=cyclooxygenase 2 /FL=gb:L20085.1 gb:S67722.1 gb:U03389.1 gb:U04300.1 gb:AF233596.1 gb:NM_017232.2 gb:L25925.1 U03389 prostaglandin-endoperoxide synthase 2 Ptgs2 29527 NM_017232 0001516 // prostaglandin biosynthetic process // inferred from mutant phenotype /// 0001516 // prostaglandin biosynthetic process // traceable author statement /// 0001516 // prostaglandin biosynthetic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from mutant phenotype /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007566 // embryo implantation // inferred from mutant phenotype /// 0007613 // memory // inferred from mutant phenotype /// 0008217 // regulation of blood pressure // not recorded /// 0008217 // regulation of blood pressure // inferred from sequence or structural similarity /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0009750 // response to fructose stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0010042 // response to manganese ion // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010575 // positive regulation vascular endothelial growth factor production // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019371 // cyclooxygenase pathway // inferred from electronic annotation /// 0019371 // cyclooxygenase pathway // not recorded /// 0030282 // bone mineralization // inferred from mutant phenotype /// 0030728 // ovulation // inferred from mutant phenotype /// 0031622 // positive regulation of fever // inferred from direct assay /// 0031622 // positive regulation of fever // not recorded /// 0031915 // positive regulation of synaptic plasticity // inferred from mutant phenotype /// 0032227 // negative regulation of synaptic transmission, dopaminergic // inferred from mutant phenotype /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from mutant phenotype /// 0033280 // response to vitamin D // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from mutant phenotype /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042640 // anagen // inferred from electronic annotation /// 0042640 // anagen // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from mutant phenotype /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype /// 0045987 // positive regulation of smooth muscle contraction // inferred from mutant phenotype /// 0046697 // decidualization // inferred from mutant phenotype /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0050873 // brown fat cell differentiation // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051726 // regulation of cell cycle // inferred from expression pattern /// 0051926 // negative regulation of calcium ion transport // inferred from mutant phenotype /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0071636 // positive regulation of transforming growth factor-beta production // inferred from mutant phenotype /// 0090050 // positive regulation of cell migration involved in sprouting angiogenesis // inferred from mutant phenotype /// 0090271 // positive regulation of fibroblast growth factor production // inferred from mutant phenotype 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005635 // nuclear envelope // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0004601 // peroxidase activity // inferred from electronic annotation /// 0004601 // peroxidase activity // not recorded /// 0004666 // prostaglandin-endoperoxide synthase activity // not recorded /// 0004666 // prostaglandin-endoperoxide synthase activity // traceable author statement /// 0004666 // prostaglandin-endoperoxide synthase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from mutant phenotype /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from direct assay /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368528_at NM_134459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134459.1 /DB_XREF=gi:19745187 /GEN=Mic2l1 /FEA=FLmRNA /CNT=11 /TID=Rn.20204.1 /TIER=FL /STK=4 /UG=Rn.20204 /LL=171485 /DEF=Rattus norvegicus MIC2 like 1 (Mic2l1), mRNA. /PROD=MIC2 like 1 /FL=gb:NM_134459.1 gb:AF481858.1 gb:AB031014.1 NM_134459 CD99 molecule-like 2 Cd99l2 171485 NM_134459 0007155 // cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 1368529_at AF481858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF481858.1 /DB_XREF=gi:19526348 /FEA=FLmRNA /CNT=11 /TID=Rn.20204.1 /TIER=FL /STK=1 /UG=Rn.20204 /LL=171485 /UG_GENE=Mic2l1 /DEF=Rattus norvegicus MIC2L1 mRNA, complete cds. /PROD=MIC2L1 /FL=gb:NM_134459.1 gb:AF481858.1 gb:AB031014.1 AF481858 CD99 molecule-like 2 Cd99l2 171485 NM_134459 0007155 // cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 1368530_at NM_053963 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053963.1 /DB_XREF=gi:16758851 /GEN=Mmp12 /FEA=FLmRNA /CNT=11 /TID=Rn.33193.1 /TIER=FL /STK=4 /UG=Rn.33193 /LL=117033 /DEF=Rattus norvegicus matrix metalloproteinase 12 (Mmp12), mRNA. /PROD=matrix metalloproteinase 12 /FL=gb:NM_053963.1 NM_053963 matrix metallopeptidase 12 Mmp12 117033 NM_053963 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0042221 // response to chemical stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0050679 // positive regulation of epithelial cell proliferation // inferred from expression pattern /// 0060054 // positive regulation of epithelial cell proliferation involved in wound healing // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368531_at NM_020079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020079.1 /DB_XREF=gi:9910511 /GEN=Prlpc /FEA=FLmRNA /CNT=10 /TID=Rn.40117.1 /TIER=FL /STK=4 /UG=Rn.40117 /LL=24658 /DEF=Rattus norvegicus Prolactin-like protein C (Prlpc), mRNA. /PROD=prolactin-like protein C /FL=gb:NM_020079.1 gb:U93351.1 NM_020079 prolactin family 8, subfamily a, member 3 Prl8a3 24658 NM_020079 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation 1368532_at NM_032081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032081.1 /DB_XREF=gi:14091771 /GEN=Pnliprp1 /FEA=FLmRNA /CNT=9 /TID=Rn.6696.1 /TIER=FL /STK=4 /UG=Rn.6696 /LL=84028 /DEF=Rattus norvegicus pancreatic lipase related protein 1 (Pnliprp1), mRNA. /PROD=pancreatic lipase related protein 1 /FL=gb:NM_032081.1 NM_032081 pancreatic lipase-related protein 1 Pnliprp1 84028 NM_032081 0006629 // lipid metabolic process // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004806 // triglyceride lipase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1368533_at NM_133304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133304.1 /DB_XREF=gi:18959243 /GEN=Heph /FEA=FLmRNA /CNT=8 /TID=Rn.43849.1 /TIER=FL /STK=4 /UG=Rn.43849 /DEF=Rattus norvegicus hephaestin (Heph), mRNA. /PROD=hephaestin /FL=gb:AF246120.1 gb:NM_133304.1 NM_133304 hephaestin Heph 117240 NM_133304 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // inferred from electronic annotation /// 0006826 // iron ion transport // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005507 // copper ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368534_at NM_024483 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024483.1 /DB_XREF=gi:13324695 /GEN=Adra1d /FEA=FLmRNA /CNT=8 /TID=Rn.11314.1 /TIER=FL /STK=4 /UG=Rn.11314 /LL=29413 /DEF=Rattus norvegicus adrenergic receptor, alpha 1d (Adra1d), mRNA. /PROD=adrenergic receptor, alpha 1d /FL=gb:M60654.1 gb:NM_024483.1 gb:L31771.1 NM_024483 adrenergic, alpha-1D-, receptor Adra1d 29413 NM_024483 0001986 // negative regulation of the force of heart contraction involved in baroreceptor response to increased systemic arterial blood pressure // inferred from electronic annotation /// 0001986 // negative regulation of the force of heart contraction involved in baroreceptor response to increased systemic arterial blood pressure // not recorded /// 0001994 // norepinephrine-epinephrine vasoconstriction involved in regulation of systemic arterial blood pressure // inferred from electronic annotation /// 0001994 // norepinephrine-epinephrine vasoconstriction involved in regulation of systemic arterial blood pressure // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004935 // adrenergic receptor activity // inferred from electronic annotation /// 0004937 // alpha1-adrenergic receptor activity // inferred from direct assay /// 0004937 // alpha1-adrenergic receptor activity // inferred from electronic annotation /// 0004937 // alpha1-adrenergic receptor activity // not recorded 1368535_at NM_057130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057130.1 /DB_XREF=gi:16923981 /GEN=Bid3 /FEA=FLmRNA /CNT=13 /TID=Rn.11344.1 /TIER=FL /STK=4 /UG=Rn.11344 /LL=117271 /DEF=Rattus norvegicus BH3 interacting (with BCL2 family) domain, apoptosis agonist (Bid3), mRNA. /PROD=BH3 interacting (with BCL2 family) domain,apoptosis agonist /FL=gb:D83697.1 gb:NM_057130.1 NM_057130 harakiri, BCL2 interacting protein (contains only BH3 domain) Hrk 117271 NM_057130 0006915 // apoptosis // inferred from mutant phenotype /// 0006915 // apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0051365 // cellular response to potassium ion starvation // inferred from mutant phenotype 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1368536_at NM_057104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057104.1 /DB_XREF=gi:16923949 /GEN=Enpp2 /FEA=FLmRNA /CNT=13 /TID=Rn.20403.1 /TIER=FL /STK=4 /UG=Rn.20403 /LL=84050 /DEF=Rattus norvegicus ectonucleotide pyrophosphatasephosphodiesterase 2 (Enpp2), mRNA. /PROD=phosphodiesterase Inucleotide pyrophosphatase2 /FL=gb:NM_057104.1 NM_057104 ectonucleotide pyrophosphatase/phosphodiesterase 2 Enpp2 84050 NM_057104 0006935 // chemotaxis // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0030334 // regulation of cell migration // not recorded 0005576 // extracellular region // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030247 // polysaccharide binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047391 // alkylglycerophosphoethanolamine phosphodiesterase activity // inferred from electronic annotation 1368537_at AI045623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045623 /DB_XREF=gi:3292442 /DB_XREF=UI-R-C1-ka-d-10-0-UI.s1 /CLONE=UI-R-C1-ka-d-10-0-UI /FEA=FLmRNA /CNT=12 /TID=Rn.23941.1 /TIER=ConsEnd /STK=1 /UG=Rn.23941 /LL=84428 /UG_GENE=Dctn4 /UG_TITLE=dynactin subunit p62 /FL=gb:AF192494.1 gb:AF192493.1 gb:NM_053404.1 gb:AF190798.1 AI045623 dynactin 4 Dctn4 84428 NM_053404 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005868 // cytoplasmic dynein complex // traceable author statement /// 0005938 // cell cortex // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0047485 // protein N-terminus binding // not recorded 1368538_at NM_022691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022691.1 /DB_XREF=gi:12083642 /GEN=Exo70 /FEA=FLmRNA /CNT=12 /TID=Rn.45761.1 /TIER=FL /STK=4 /UG=Rn.45761 /LL=64632 /DEF=Rattus norvegicus rexo70 (Exo70), mRNA. /PROD=rexo70 /FL=gb:AF032667.1 gb:NM_022691.1 NM_022691 exocyst complex component 7 Exoc7 64632 NM_022691 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0006887 // exocytosis // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation 0000145 // exocyst // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0034451 // centriolar satellite // not recorded 0005515 // protein binding // not recorded 1368539_at NM_133289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133289.1 /DB_XREF=gi:18959221 /GEN=Scn9a /FEA=FLmRNA /CNT=11 /TID=Rn.32105.1 /TIER=FL /STK=4 /UG=Rn.32105 /LL=78956 /DEF=Rattus norvegicus sodium channel, type IX, alpha polypeptide (Scn9a), mRNA. /PROD=sodium channel 25 /FL=gb:AF000368.1 gb:NM_133289.1 NM_133289 sodium channel, voltage-gated, type IX, alpha Scn9a 78956 NM_133289 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0009636 // response to toxin // not recorded /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0019228 // regulation of action potential in neuron // inferred from direct assay /// 0043179 // rhythmic excitation // non-traceable author statement /// 0048266 // behavioral response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0001518 // voltage-gated sodium channel complex // inferred from direct assay /// 0001518 // voltage-gated sodium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005248 // voltage-gated sodium channel activity // inferred from direct assay /// 0005248 // voltage-gated sodium channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0031402 // sodium ion binding // inferred from direct assay 1368540_at NM_031807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031807.1 /DB_XREF=gi:13929143 /GEN=Tpbg /FEA=FLmRNA /CNT=9 /TID=Rn.43122.1 /TIER=FL /STK=4 /UG=Rn.43122 /LL=83684 /DEF=Rattus norvegicus trophoblast glycoprotein (Tpbg), mRNA. /PROD=trophoblast glycoprotein /FL=gb:NM_031807.1 gb:AF063939.1 NM_031807 trophoblast glycoprotein Tpbg 83684 NM_031807 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1368541_at NM_053719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053719.1 /DB_XREF=gi:16758533 /GEN=Emb /FEA=FLmRNA /CNT=9 /TID=Rn.16221.1 /TIER=FL /STK=4 /UG=Rn.16221 /LL=114511 /DEF=Rattus norvegicus embigin (Emb), mRNA. /PROD=embigin /FL=gb:NM_053719.1 NM_053719 embigin homolog (mouse) Emb 114511 NM_053719 0007155 // cell adhesion // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1368542_at NM_053583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053583.1 /DB_XREF=gi:16758355 /GEN=Roaz /FEA=FLmRNA /CNT=7 /TID=Rn.9981.1 /TIER=FL /STK=4 /UG=Rn.9981 /LL=94188 /DEF=Rattus norvegicus Olf-1EBF associated Zn finger protein Roaz (Roaz), mRNA. /PROD=Olf-1EBF associated Zn finger protein Roaz /FL=gb:NM_053583.1 gb:U92564.1 NM_053583 zinc finger protein 423 Zfp423 94188 NM_053583 0006350 // transcription // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // inferred from direct assay /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1368543_at NM_053524 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053524.1 /DB_XREF=gi:16758287 /GEN=Nox4 /FEA=FLmRNA /CNT=7 /TID=Rn.14744.1 /TIER=FL /STK=4 /UG=Rn.14744 /LL=85431 /DEF=Rattus norvegicus NADPH oxidase 4 (Nox4), mRNA. /PROD=NADPH oxidase 4 /FL=gb:AB044086.1 gb:NM_053524.1 gb:AY027527.1 NM_053524 NADPH oxidase 4 Nox4 85431 NM_053524 0000902 // cell morphogenesis // not recorded /// 0000902 // cell morphogenesis // inferred from sequence or structural similarity /// 0001666 // response to hypoxia // inferred from expression pattern /// 0006800 // oxygen and reactive oxygen species metabolic process // not recorded /// 0006800 // oxygen and reactive oxygen species metabolic process // inferred from sequence or structural similarity /// 0006801 // superoxide metabolic process // inferred from direct assay /// 0006801 // superoxide metabolic process // inferred from mutant phenotype /// 0007568 // aging // inferred from expression pattern /// 0007569 // cell aging // not recorded /// 0007569 // cell aging // inferred from sequence or structural similarity /// 0008152 // metabolic process // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0010670 // positive regulation of oxygen and reactive oxygen species metabolic process // inferred from mutant phenotype /// 0014911 // positive regulation of smooth muscle cell migration // inferred from mutant phenotype /// 0035051 // cardiac cell differentiation // not recorded /// 0042554 // superoxide anion generation // not recorded /// 0042554 // superoxide anion generation // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0045453 // bone resorption // not recorded /// 0051496 // positive regulation of stress fiber assembly // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded /// 0055114 // oxidation reduction // inferred from sequence or structural similarity /// 0071320 // cellular response to cAMP // inferred from expression pattern /// 0071480 // cellular response to gamma radiation // inferred from expression pattern /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from expression pattern 0001725 // stress fiber // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0005925 // focal adhesion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0043020 // NADPH oxidase complex // inferred from direct assay 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016174 // NAD(P)H oxidase activity // inferred from direct assay /// 0016175 // superoxide-generating NADPH oxidase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0050664 // oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor // inferred from direct assay 1368544_a_at NM_053516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053516.1 /DB_XREF=gi:16758277 /GEN=LOC85383 /FEA=FLmRNA /CNT=7 /TID=Rn.65864.1 /TIER=FL /STK=4 /UG=Rn.65864 /LL=85383 /DEF=Rattus norvegicus unknown Glu-Pro dipeptide repeat protein (LOC85383), mRNA. /PROD=unknown Glu-Pro dipeptide repeat protein /FL=gb:U40628.1 gb:NM_053516.1 NM_053516 nucleolar protein 3 (apoptosis repressor with CARD domain) Nol3 85383 NM_053516 0001666 // response to hypoxia // inferred from expression pattern /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0042981 // regulation of apoptosis // traceable author statement /// 0042981 // regulation of apoptosis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016528 // sarcoplasm // inferred from electronic annotation /// 0016528 // sarcoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1368545_at NM_057138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057138.1 /DB_XREF=gi:16923993 /GEN=Cflar /FEA=FLmRNA /CNT=7 /TID=Rn.28010.1 /TIER=FL /STK=4 /UG=Rn.28010 /LL=117279 /DEF=Rattus norvegicus CASP8 and FADD-like apoptosis regulator (Cflar), mRNA. /PROD=CASP8 and FADD-like apoptosis regulator /FL=gb:AF244366.1 gb:NM_057138.1 NM_057138 CASP8 and FADD-like apoptosis regulator Cflar 117279 NM_001033864 /// NM_057138 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043154 // negative regulation of caspase activity // not recorded 0005737 // cytoplasm // not recorded /// 0031265 // CD95 death-inducing signaling complex // inferred from direct assay 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation 1368546_at NM_024137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024137.1 /DB_XREF=gi:13162313 /GEN=Hivep2 /FEA=FLmRNA /CNT=14 /TID=Rn.9802.1 /TIER=FL /STK=4 /UG=Rn.9802 /LL=29721 /DEF=Rattus norvegicus human immunodeficiency virus type I enhancer-binding protein 2 (Hivep2), mRNA. /PROD=human immunodeficiency virus type Ienhancer-binding protein 2 /FL=gb:D37951.1 gb:NM_024137.1 NM_024137 human immunodeficiency virus type I enhancer binding protein 2 Hivep2 29721 NM_024137 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368547_at NM_130402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130402.1 /DB_XREF=gi:18426817 /GEN=Ocil /FEA=FLmRNA /CNT=11 /TID=Rn.22573.1 /TIER=FL /STK=4 /UG=Rn.22573 /LL=113937 /DEF=Rattus norvegicus osteoclast inhibitory lectin (Ocil), mRNA. /PROD=osteoclast inhibitory lectin /FL=gb:NM_130402.1 gb:AF321552.1 NM_130402 C-type lectin domain family 2, member d Clec2d 113937 NM_130402 0042270 // protection from natural killer cell mediated cytotoxicity // not recorded /// 0045671 // negative regulation of osteoclast differentiation // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from electronic annotation /// 0046703 // natural killer cell lectin-like receptor binding // not recorded 1368548_at NM_019134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019134.1 /DB_XREF=gi:9507102 /GEN=Slc12a1 /FEA=FLmRNA /CNT=9 /TID=Rn.14799.1 /TIER=FL /STK=4 /UG=Rn.14799 /LL=25065 /DEF=Rattus norvegicus Solute carrier family 12, member 1 (bumetanide-sensitive sodium-(potassium)-chloride cotransporter) (Slc12a1), mRNA. /PROD=solute carrier family 12, member 1(bumetanide-sensitive sodium-(potassium)-chloridecotransporter) /FL=gb:U10096.1 gb:NM_019134.1 NM_019134 solute carrier family 12 (sodium/potassium/chloride transporters), member 1 Slc12a1 25065 NM_019134 0001822 // kidney development // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from direct assay /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from direct assay /// 0006821 // chloride transport // inferred from electronic annotation /// 0007588 // excretion // not recorded /// 0048878 // chemical homeostasis // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008511 // sodium:potassium:chloride symporter activity // inferred from direct assay /// 0015293 // symporter activity // inferred from electronic annotation /// 0015377 // cation:chloride symporter activity // inferred from electronic annotation 1368549_at NM_013221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013221.1 /DB_XREF=gi:6981011 /GEN=Hbp1 /FEA=FLmRNA /CNT=9 /TID=Rn.11101.1 /TIER=FL /STK=4 /UG=Rn.11101 /LL=27080 /DEF=Rattus norvegicus HMG-box containing protein 1 (Hbp1), mRNA. /PROD=HMG-box containing protein 1 /FL=gb:U09551.1 gb:NM_013221.1 NM_013221 HMG-box transcription factor 1 Hbp1 27080 NM_013221 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // non-traceable author statement /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030154 // cell differentiation // non-traceable author statement /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from direct assay 1368550_at NM_022858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022858.1 /DB_XREF=gi:12408311 /GEN=Hfh1 /FEA=FLmRNA /CNT=9 /TID=Rn.10101.1 /TIER=FL /STK=4 /UG=Rn.10101 /LL=64826 /DEF=Rattus norvegicus HNF-3forkhead homolog-1 (Hfh1), mRNA. /PROD=HNF-3forkhead homolog-1 /FL=gb:L13201.1 gb:NM_022858.1 NM_022858 forkhead box Q1 Foxq1 64826 NM_022858 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1368551_at M17259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M17259.1 /DB_XREF=gi:206433 /FEA=FLmRNA /CNT=8 /TID=Rn.11320.1 /TIER=FL /STK=2 /UG=Rn.11320 /LL=24689 /UG_GENE=Prps2 /UG_TITLE=Phophoribosylpyrophosphate synthetase, subunit II /DEF=Rat phosphoribosyl pyrophosphate synthetase II mRNA, complete cds. /FL=gb:NM_012634.1 gb:M29393.1 gb:M17259.1 M17259 phosphoribosyl pyrophosphate synthetase 2 Prps2 24689 NM_012634 0006167 // AMP biosynthetic process // inferred from direct assay /// 0009116 // nucleoside metabolic process // inferred from electronic annotation /// 0009156 // ribonucleoside monophosphate biosynthetic process // inferred from electronic annotation /// 0009165 // nucleotide biosynthetic process // inferred from direct assay /// 0009165 // nucleotide biosynthetic process // inferred from electronic annotation /// 0019693 // ribose phosphate metabolic process // inferred from direct assay /// 0031100 // organ regeneration // inferred from expression pattern /// 0044249 // cellular biosynthetic process // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004749 // ribose phosphate diphosphokinase activity // inferred from direct assay /// 0004749 // ribose phosphate diphosphokinase activity // inferred from sequence or structural similarity /// 0004749 // ribose phosphate diphosphokinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from direct assay /// 0016208 // AMP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019003 // GDP binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0043531 // ADP binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1368552_at NM_024487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024487.1 /DB_XREF=gi:13324703 /GEN=Grpel1 /FEA=FLmRNA /CNT=8 /TID=Rn.10630.1 /TIER=FL /STK=4 /UG=Rn.10630 /LL=79563 /DEF=Rattus norvegicus GrpE-like 1, mitochondrial (Grpel1), mRNA. /PROD=GrpE-like 1, mitochondrial /FL=gb:NM_024487.1 gb:U62940.1 NM_024487 GrpE-like 1, mitochondrial Grpel1 79563 NM_024487 0006457 // protein folding // inferred from electronic annotation /// 0030150 // protein import into mitochondrial matrix // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded 0000774 // adenyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // not recorded /// 0051087 // chaperone binding // inferred from electronic annotation 1368553_at NM_022441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022441.1 /DB_XREF=gi:11967972 /GEN=Acvrl1 /FEA=FLmRNA /CNT=6 /TID=Rn.10631.1 /TIER=FL /STK=4 /UG=Rn.10631 /LL=25237 /DEF=Rattus norvegicus Activin receptor like kinase 1 (Acvrl1), mRNA. /PROD=activin receptor like kinase 1 /FL=gb:L36088.1 gb:NM_022441.1 NM_022441 activin A receptor type II-like 1 Acvrl1 25237 NM_022441 0001525 // angiogenesis // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // traceable author statement /// 0007162 // negative regulation of cell adhesion // not recorded /// 0007165 // signal transduction // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0008015 // blood circulation // not recorded /// 0008217 // regulation of blood pressure // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010596 // negative regulation of endothelial cell migration // not recorded /// 0030308 // negative regulation of cell growth // not recorded /// 0030336 // negative regulation of cell migration // not recorded /// 0030513 // positive regulation of BMP signaling pathway // not recorded /// 0035313 // wound healing, spreading of epidermal cells // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0048514 // blood vessel morphogenesis // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051895 // negative regulation of focal adhesion assembly // not recorded 0005887 // integral to plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // traceable author statement /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // inferred from electronic annotation /// 0004702 // receptor signaling protein serine/threonine kinase activity // inferred from direct assay /// 0004872 // receptor activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta receptor activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta receptor activity // not recorded /// 0005025 // transforming growth factor beta receptor activity, type I // inferred from direct assay /// 0005025 // transforming growth factor beta receptor activity, type I // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016361 // activin receptor activity, type I // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0046332 // SMAD binding // inferred from direct assay /// 0046332 // SMAD binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048185 // activin binding // not recorded /// 0050431 // transforming growth factor beta binding // not recorded /// 0050431 // transforming growth factor beta binding // traceable author statement 1368554_at NM_013161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013161.1 /DB_XREF=gi:6981375 /GEN=Pnlip /FEA=FLmRNA /CNT=6 /TID=Rn.10130.1 /TIER=FL /STK=4 /UG=Rn.10130 /LL=25702 /DEF=Rattus norvegicus Pancreatic lipase (Pnlip), mRNA. /PROD=pancreatic lipase /FL=gb:M58369.1 gb:NM_013161.1 NM_013161 pancreatic lipase Pnlip 25702 NM_013161 0006629 // lipid metabolic process // inferred from direct assay /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from direct assay /// 0009791 // post-embryonic development // inferred from expression pattern /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0030299 // intestinal cholesterol absorption // inferred from electronic annotation /// 0030299 // intestinal cholesterol absorption // not recorded /// 0033993 // response to lipid // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004806 // triglyceride lipase activity // inferred from direct assay /// 0004806 // triglyceride lipase activity // inferred from electronic annotation /// 0016298 // lipase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation 1368555_at NM_017124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017124.1 /DB_XREF=gi:8393072 /GEN=Cd37 /FEA=FLmRNA /CNT=6 /TID=Rn.2357.1 /TIER=FL /STK=4 /UG=Rn.2357 /LL=29185 /DEF=Rattus norvegicus CD37 antigen (Cd37), mRNA. /PROD=CD37 antigen /FL=gb:NM_017124.1 NM_017124 CD37 molecule Cd37 29185 NM_017124 0002639 // positive regulation of immunoglobulin production // inferred from electronic annotation /// 0002639 // positive regulation of immunoglobulin production // not recorded /// 0002920 // regulation of humoral immune response // inferred from electronic annotation /// 0002920 // regulation of humoral immune response // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1368556_at NM_053574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053574.1 /DB_XREF=gi:16758345 /GEN=VEGP2 /FEA=FLmRNA /CNT=6 /TID=Rn.11217.1 /TIER=FL /STK=4 /UG=Rn.11217 /LL=94106 /DEF=Rattus norvegicus VEGP2 gene (VEGP2), mRNA. /PROD=VEGP2 gene /FL=gb:NM_053574.1 NM_053574 von Ebners gland protein 2 Vegp2 94106 NM_053574 0006810 // transport // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1368557_s_at NM_022945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022945.1 /DB_XREF=gi:12621113 /GEN=Vegp1 /FEA=FLmRNA /CNT=2 /TID=Rn.37454.1 /TIER=FL /STK=1 /UG=Rn.37454 /LL=65039 /DEF=Rattus norvegicus von Ebners gland protein 1 (Vegp1), mRNA. /PROD=von Ebners gland protein 1 /FL=gb:NM_022945.1 NM_022945 von Ebners gland protein 1 /// von Ebners gland protein 2 Vegp1 /// Vegp2 65039 /// 94106 NM_022945 /// NM_053574 0006810 // transport // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1368558_s_at NM_017196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017196.1 /DB_XREF=gi:8392880 /GEN=Aif1 /FEA=FLmRNA /CNT=6 /TID=Rn.32080.1 /TIER=FL /STK=4 /UG=Rn.32080 /LL=29427 /DEF=Rattus norvegicus allograft inflammatory factor 1 (Aif1), mRNA. /PROD=allograft inflammatory factor 1 /FL=gb:AB000818.1 gb:U17919.1 gb:NM_017196.1 NM_017196 allograft inflammatory factor 1 Aif1 29427 NM_017196 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0010629 // negative regulation of gene expression // inferred from mutant phenotype /// 0014739 // positive regulation of muscle hyperplasia // inferred from mutant phenotype /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0031668 // cellular response to extracellular stimulus // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042116 // macrophage activation // non-traceable author statement /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from direct assay /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from mutant phenotype /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0048678 // response to axon injury // inferred from expression pattern /// 0051017 // actin filament bundle assembly // inferred from electronic annotation /// 0051017 // actin filament bundle assembly // not recorded /// 0051017 // actin filament bundle assembly // inferred from sequence or structural similarity /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051602 // response to electrical stimulus // inferred from expression pattern /// 0070887 // cellular response to chemical stimulus // inferred from expression pattern 0001726 // ruffle // inferred from electronic annotation /// 0001726 // ruffle // not recorded /// 0001891 // phagocytic cup // inferred from electronic annotation /// 0001891 // phagocytic cup // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // inferred from electronic annotation /// 0005884 // actin filament // not recorded /// 0005884 // actin filament // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from direct assay /// 0032587 // ruffle membrane // not recorded /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from sequence or structural similarity /// 0042995 // cell projection // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043204 // perikaryon // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051015 // actin filament binding // not recorded /// 0051015 // actin filament binding // inferred from sequence or structural similarity 1368559_at NM_017091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017091.1 /DB_XREF=gi:8393918 /GEN=Pcsk1 /FEA=FLmRNA /CNT=12 /TID=Rn.11384.1 /TIER=FL /STK=3 /UG=Rn.11384 /LL=25204 /DEF=Rattus norvegicus Protein convertase subtilisin kexin, type I (Pcsk1), mRNA. /PROD=protein convertase subtilisin kexin, type I /FL=gb:M76705.1 gb:M83745.1 gb:NM_017091.1 NM_017091 proprotein convertase subtilisin/kexin type 1 Pcsk1 25204 NM_017091 0006508 // proteolysis // inferred from mutant phenotype /// 0006508 // proteolysis // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0009790 // embryo development // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010157 // response to chlorate // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016486 // peptide hormone processing // inferred from direct assay /// 0016486 // peptide hormone processing // inferred from mutant phenotype /// 0016486 // peptide hormone processing // not recorded /// 0016486 // peptide hormone processing // inferred from electronic annotation /// 0016540 // protein autoprocessing // inferred from mutant phenotype /// 0021983 // pituitary gland development // inferred from expression pattern /// 0022008 // neurogenesis // inferred from expression pattern /// 0031016 // pancreas development // inferred from expression pattern /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043043 // peptide biosynthetic process // inferred from electronic annotation /// 0043043 // peptide biosynthetic process // not recorded /// 0043278 // response to morphine // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0048678 // response to axon injury // inferred from expression pattern /// 0050714 // positive regulation of protein secretion // inferred from direct assay /// 0050714 // positive regulation of protein secretion // inferred from mutant phenotype /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from expression pattern /// 0051605 // protein maturation by peptide bond cleavage // not recorded /// 0051605 // protein maturation by peptide bond cleavage // inferred from electronic annotation /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0070542 // response to fatty acid // inferred from expression pattern /// 0070555 // response to interleukin-1 // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0030133 // transport vesicle // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004175 // endopeptidase activity // inferred from direct assay /// 0004175 // endopeptidase activity // inferred from mutant phenotype /// 0004175 // endopeptidase activity // not recorded /// 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0043559 // insulin binding // inferred from physical interaction /// 0051087 // chaperone binding // inferred from physical interaction 1368560_at NM_017297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017297.1 /DB_XREF=gi:8393653 /GEN=Kcnj5 /FEA=FLmRNA /CNT=11 /TID=Rn.10047.1 /TIER=FL /STK=4 /UG=Rn.10047 /LL=29713 /DEF=Rattus norvegicus potassium inwardly-rectifying channel, subfamily J, member 5 (Kcnj5), mRNA. /PROD=potassium inwardly-rectifying channel, subfamilyJ, member 5 /FL=gb:D50135.1 gb:NM_017297.1 gb:L35771.1 NM_017297 potassium inwardly-rectifying channel, subfamily J, member 5 Kcnj5 29713 NM_017297 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0009897 // external side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030315 // T-tubule // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // not recorded /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015467 // G-protein activated inward rectifier potassium channel activity // inferred from electronic annotation 1368561_at NM_033352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_033352.1 /DB_XREF=gi:15375323 /GEN=Abcd2 /FEA=FLmRNA /CNT=10 /TID=Rn.19678.1 /TIER=FL /STK=4 /UG=Rn.19678 /LL=84356 /DEF=Rattus norvegicus ATP-binding cassette, sub-family D (ALD), member 2 (Abcd2), mRNA. /PROD=ATP-binding cassette, sub-family D (ALD), member2 /FL=gb:NM_033352.1 gb:AF131294.1 NM_033352 ATP-binding cassette, sub-family D (ALD), member 2 Abcd2 84356 NM_033352 0006810 // transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1368562_at NM_031641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031641.1 /DB_XREF=gi:13928881 /GEN=Sultx3-pending /FEA=FLmRNA /CNT=10 /TID=Rn.41474.1 /TIER=FL /STK=4 /UG=Rn.41474 /LL=58953 /DEF=Rattus norvegicus sulfotransferase-related protein (Sultx3-pending), mRNA. /PROD=sulfotransferase-related protein /FL=gb:AF188699.1 gb:NM_031641.1 NM_031641 sulfotransferase family 4A, member 1 Sult4a1 58953 NM_031641 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006790 // sulfur compound metabolic process // not recorded /// 0008202 // steroid metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0008146 // sulfotransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation 1368563_at NM_024399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024399.1 /DB_XREF=gi:13242313 /GEN=Aspa /FEA=FLmRNA /CNT=10 /TID=Rn.21677.1 /TIER=FL /STK=4 /UG=Rn.21677 /LL=79251 /DEF=Rattus norvegicus aspartoacylase (Aspa), mRNA. /PROD=aspartoacylase /FL=gb:AB023432.1 gb:NM_024399.1 NM_024399 aspartoacylase Aspa 79251 NM_024399 0008152 // metabolic process // inferred from electronic annotation /// 0022010 // central nervous system myelination // inferred from expression pattern /// 0048714 // positive regulation of oligodendrocyte differentiation // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation /// 0019807 // aspartoacylase activity // inferred from electronic annotation /// 0019807 // aspartoacylase activity // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 1368564_at NM_053427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053427.1 /DB_XREF=gi:16758165 /GEN=Dnpi /FEA=FLmRNA /CNT=8 /TID=Rn.19372.1 /TIER=FL /STK=4 /UG=Rn.19372 /LL=84487 /DEF=Rattus norvegicus differentation-associated Na-dependent inorganic phosphate cotransporter (Dnpi), mRNA. /PROD=differentation-associated Na-dependent inorganicphosphate cotra /FL=gb:NM_053427.1 gb:AF271235.1 NM_053427 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6 Slc17a6 84487 NM_053427 0001504 // neurotransmitter uptake // not recorded /// 0001504 // neurotransmitter uptake // traceable author statement /// 0001504 // neurotransmitter uptake // inferred from electronic annotation /// 0003333 // amino acid transmembrane transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0015807 // L-amino acid transport // not recorded /// 0015813 // L-glutamate transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005769 // early endosome // inferred from direct assay /// 0008021 // synaptic vesicle // not recorded /// 0008021 // synaptic vesicle // traceable author statement /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005313 // L-glutamate transmembrane transporter activity // inferred from direct assay /// 0005313 // L-glutamate transmembrane transporter activity // not recorded /// 0005313 // L-glutamate transmembrane transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation 1368565_at NM_019225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019225.1 /DB_XREF=gi:9507114 /GEN=Slc1a3 /FEA=FLmRNA /CNT=8 /TID=Rn.34134.1 /TIER=FL /STK=4 /UG=Rn.34134 /LL=29483 /DEF=Rattus norvegicus solute carrier family 1, member 3 (Slc1a3), mRNA. /PROD=solute carrier family 1, member 3 /FL=gb:NM_019225.1 NM_019225 solute carrier family 1 (glial high affinity glutamate transporter), member 3 Slc1a3 29483 NM_019225 0003333 // amino acid transmembrane transport // not recorded /// 0006536 // glutamate metabolic process // not recorded /// 0006536 // glutamate metabolic process // inferred from electronic annotation /// 0006537 // glutamate biosynthetic process // inferred from electronic annotation /// 0006537 // glutamate biosynthetic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006835 // dicarboxylic acid transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // traceable author statement /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0009416 // response to light stimulus // inferred from electronic annotation /// 0009416 // response to light stimulus // not recorded /// 0009449 // gamma-aminobutyric acid biosynthetic process // inferred from electronic annotation /// 0009449 // gamma-aminobutyric acid biosynthetic process // not recorded /// 0009611 // response to wounding // inferred from electronic annotation /// 0009611 // response to wounding // not recorded /// 0010035 // response to inorganic substance // inferred from direct assay /// 0015807 // L-amino acid transport // not recorded /// 0015813 // L-glutamate transport // inferred from direct assay /// 0015813 // L-glutamate transport // inferred from mutant phenotype /// 0015813 // L-glutamate transport // not recorded /// 0015813 // L-glutamate transport // inferred from electronic annotation /// 0021545 // cranial nerve development // inferred from electronic annotation /// 0021545 // cranial nerve development // not recorded /// 0031223 // auditory behavior // inferred from electronic annotation /// 0031223 // auditory behavior // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0043490 // malate-aspartate shuttle // inferred from direct assay /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0046677 // response to antibiotic // not recorded /// 0048667 // cell morphogenesis involved in neuron differentiation // inferred from electronic annotation /// 0048667 // cell morphogenesis involved in neuron differentiation // not recorded /// 0050806 // positive regulation of synaptic transmission // inferred from electronic annotation /// 0050806 // positive regulation of synaptic transmission // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0051938 // L-glutamate import // inferred from electronic annotation /// 0051938 // L-glutamate import // not recorded /// 0070779 // D-aspartate import // inferred from electronic annotation /// 0070779 // D-aspartate import // not recorded /// 0071436 // sodium ion export // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0042995 // cell projection // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043197 // dendritic spine // inferred from direct assay /// 0043205 // fibril // inferred from electronic annotation /// 0043205 // fibril // not recorded /// 0045202 // synapse // inferred from direct assay 0005313 // L-glutamate transmembrane transporter activity // inferred from direct assay /// 0005313 // L-glutamate transmembrane transporter activity // traceable author statement /// 0005314 // high-affinity glutamate transmembrane transporter activity // inferred from mutant phenotype /// 0005314 // high-affinity glutamate transmembrane transporter activity // not recorded /// 0005314 // high-affinity glutamate transmembrane transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015293 // symporter activity // inferred from electronic annotation /// 0016595 // glutamate binding // inferred from electronic annotation /// 0016595 // glutamate binding // not recorded /// 0016597 // amino acid binding // not recorded /// 0016597 // amino acid binding // inferred from electronic annotation /// 0017153 // sodium:dicarboxylate symporter activity // inferred from electronic annotation 1368566_a_at AA964381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964381 /DB_XREF=gi:4279256 /DB_XREF=UI-R-C0-gw-h-11-0-UI.s1 /CLONE=UI-R-C0-gw-h-11-0-UI /FEA=EST /CNT=16 /TID=Rn.6452.2 /TIER=Stack /STK=13 /UG=Rn.6452 /LL=64539 /UG_GENE=Mipp65 /UG_TITLE=MIPP65 protein AA964381 NADH dehydrogenase (ubiquinone) flavoprotein 3 Ndufv3 64539 NM_001101011 /// NM_022607 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 1368567_at NM_022607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022607.1 /DB_XREF=gi:12018281 /GEN=Mipp65 /FEA=FLmRNA /CNT=8 /TID=Rn.6452.1 /TIER=FL /STK=4 /UG=Rn.6452 /LL=64539 /DEF=Rattus norvegicus MIPP65 protein (Mipp65), mRNA. /PROD=MIPP65 protein /FL=gb:NM_022607.1 gb:AB000098.1 NM_022607 NADH dehydrogenase (ubiquinone) flavoprotein 3 Ndufv3 64539 NM_001101011 /// NM_022607 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 1368568_at D13906 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D13906.1 /DB_XREF=gi:286195 /FEA=FLmRNA /CNT=8 /TID=Rn.44378.1 /TIER=FL /STK=4 /UG=Rn.44378 /LL=25386 /UG_GENE=Aqp2 /DEF=Rattus norvegicus mRNA for ADH water channel, complete cds. /PROD=ADH water channel /FL=gb:L28112.1 gb:D13906.1 gb:NM_012909.1 D13906 aquaporin 2 (collecting duct) Aqp2 25386 NM_012909 0003097 // renal water transport // inferred from electronic annotation /// 0003097 // renal water transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006833 // water transport // inferred from expression pattern /// 0006833 // water transport // inferred from mutant phenotype /// 0006833 // water transport // not recorded /// 0006833 // water transport // traceable author statement /// 0006833 // water transport // inferred from electronic annotation /// 0006884 // cell volume homeostasis // inferred from mutant phenotype /// 0006915 // apoptosis // inferred from mutant phenotype /// 0006972 // hyperosmotic response // inferred from expression pattern /// 0007565 // female pregnancy // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0009414 // response to water deprivation // inferred from expression pattern /// 0009651 // response to salt stress // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0010226 // response to lithium ion // inferred from expression pattern /// 0015793 // glycerol transport // not recorded /// 0015793 // glycerol transport // inferred from electronic annotation /// 0030042 // actin filament depolymerization // inferred from direct assay /// 0030104 // water homeostasis // traceable author statement /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033762 // response to glucagon stimulus // inferred from expression pattern /// 0042594 // response to starvation // inferred from expression pattern /// 0042631 // cellular response to water deprivation // inferred from direct assay /// 0042631 // cellular response to water deprivation // not recorded /// 0042631 // cellular response to water deprivation // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from expression pattern /// 0051928 // positive regulation of calcium ion transport // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055085 // transmembrane transport // not recorded /// 0071280 // cellular response to copper ion // inferred from electronic annotation /// 0071280 // cellular response to copper ion // not recorded /// 0071288 // cellular response to mercury ion // inferred from electronic annotation /// 0071288 // cellular response to mercury ion // not recorded 0000267 // cell fraction // inferred from direct assay /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005769 // early endosome // inferred from direct assay /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from direct assay /// 0030136 // clathrin-coated vesicle // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0055037 // recycling endosome // inferred from electronic annotation /// 0055037 // recycling endosome // not recorded /// 0070382 // exocytic vesicle // inferred from direct assay 0003779 // actin binding // inferred from direct assay /// 0005215 // transporter activity // inferred from electronic annotation /// 0005372 // water transmembrane transporter activity // inferred from mutant phenotype /// 0005372 // water transmembrane transporter activity // not recorded /// 0005372 // water transmembrane transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0015168 // glycerol transmembrane transporter activity // inferred from electronic annotation /// 0015168 // glycerol transmembrane transporter activity // not recorded /// 0015250 // water channel activity // not recorded /// 0015250 // water channel activity // traceable author statement /// 0015250 // water channel activity // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction 1368569_at NM_053781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053781.1 /DB_XREF=gi:16758619 /GEN=Avdp /FEA=FLmRNA /CNT=7 /TID=Rn.32702.1 /TIER=FL /STK=4 /UG=Rn.32702 /LL=116463 /DEF=Rattus norvegicus androgen regulated vas deferens protein (Avdp), mRNA. /PROD=androgen regulated vas deferens protein /FL=gb:NM_053781.1 gb:AF182168.1 NM_053781 aldo-keto reductase family 1, member B7 Akr1b7 116463 NM_053781 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0004032 // aldehyde reductase activity // traceable author statement /// 0004033 // aldo-keto reductase activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1368570_at NM_022280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022280.2 /DB_XREF=gi:13786117 /GEN=Lrat /FEA=FLmRNA /CNT=6 /TID=Rn.54479.1 /TIER=FL /STK=4 /UG=Rn.54479 /LL=64047 /DEF=Rattus norvegicus lecithin retinol acyltransferase (Lrat), mRNA. /PROD=lecithin retinol acyltransferase /FL=gb:NM_022280.2 gb:AF255060.2 NM_022280 lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase) Lrat 64047 NM_022280 0006776 // vitamin A metabolic process // inferred from direct assay /// 0006776 // vitamin A metabolic process // not recorded /// 0006776 // vitamin A metabolic process // inferred from electronic annotation /// 0007601 // visual perception // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0042572 // retinol metabolic process // inferred from direct assay /// 0042572 // retinol metabolic process // not recorded /// 0042572 // retinol metabolic process // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005771 // multivesicular body // inferred from direct assay /// 0005771 // multivesicular body // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0001972 // retinoic acid binding // inferred from direct assay /// 0008374 // O-acyltransferase activity // not recorded /// 0008374 // O-acyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019841 // retinol binding // inferred from direct assay /// 0047173 // phosphatidylcholine-retinol O-acyltransferase activity // inferred from direct assay /// 0047173 // phosphatidylcholine-retinol O-acyltransferase activity // inferred from electronic annotation 1368571_at NM_021997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021997.1 /DB_XREF=gi:11496270 /GEN=Cyln2 /FEA=FLmRNA /CNT=6 /TID=Rn.10893.1 /TIER=FL /STK=4 /UG=Rn.10893 /LL=29264 /DEF=Rattus norvegicus cytoplasmic linker 2 (Cyln2), mRNA. /PROD=cytoplasmic linker 2 /FL=gb:NM_021997.1 NM_021997 CAP-GLY domain containing linker protein 2 Clip2 29264 NM_021997 0007026 // negative regulation of microtubule depolymerization // non-traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred from direct assay /// 0005881 // cytoplasmic microtubule // inferred from direct assay /// 0005881 // cytoplasmic microtubule // not recorded /// 0005881 // cytoplasmic microtubule // inferred from electronic annotation /// 0030425 // dendrite // traceable author statement /// 0042599 // lamellar body // traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from direct assay /// 0008017 // microtubule binding // traceable author statement /// 0051010 // microtubule plus-end binding // inferred from direct assay 1368572_a_at NM_017010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017010.1 /DB_XREF=gi:8393483 /GEN=Grin1 /FEA=FLmRNA /CNT=6 /TID=Rn.9840.1 /TIER=FL /STK=4 /UG=Rn.9840 /LL=24408 /DEF=Rattus norvegicus Glutamate receptor, ionotropic, N-methyl D-aspartate 1 (Grin1), mRNA. /PROD=glutamate receptor, ionotropic, N-methylD-aspartate 1 /FL=gb:U11418.1 gb:NM_017010.1 gb:U08261.1 NM_017010 glutamate receptor, ionotropic, N-methyl D-aspartate 1 Grin1 24408 NM_017010 0001661 // conditioned taste aversion // not recorded /// 0001661 // conditioned taste aversion // inferred from electronic annotation /// 0001964 // startle response // not recorded /// 0001964 // startle response // inferred from electronic annotation /// 0001967 // suckling behavior // not recorded /// 0001967 // suckling behavior // inferred from electronic annotation /// 0001975 // response to amphetamine // not recorded /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006812 // cation transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007585 // respiratory gaseous exchange // not recorded /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007611 // learning or memory // not recorded /// 0007611 // learning or memory // traceable author statement /// 0007611 // learning or memory // inferred from electronic annotation /// 0007611 // learning or memory // inferred from mutant phenotype /// 0007612 // learning // not recorded /// 0007612 // learning // inferred from electronic annotation /// 0007613 // memory // not recorded /// 0007613 // memory // inferred from electronic annotation /// 0007616 // long-term memory // not recorded /// 0007616 // long-term memory // inferred from electronic annotation /// 0008306 // associative learning // not recorded /// 0008306 // associative learning // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008355 // olfactory learning // not recorded /// 0008355 // olfactory learning // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0008542 // visual learning // inferred from electronic annotation /// 0010646 // regulation of cell communication // not recorded /// 0010646 // regulation of cell communication // inferred from electronic annotation /// 0010942 // positive regulation of cell death // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014075 // response to amine stimulus // inferred from expression pattern /// 0019233 // sensory perception of pain // not recorded /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0021586 // pons maturation // not recorded /// 0021586 // pons maturation // inferred from electronic annotation /// 0021987 // cerebral cortex development // not recorded /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0035176 // social behavior // not recorded /// 0035176 // social behavior // inferred from electronic annotation /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from direct assay /// 0035235 // ionotropic glutamate receptor signaling pathway // not recorded /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from electronic annotation /// 0035249 // synaptic transmission, glutamatergic // not recorded /// 0035249 // synaptic transmission, glutamatergic // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043278 // response to morphine // not recorded /// 0043278 // response to morphine // inferred from electronic annotation /// 0043523 // regulation of neuron apoptosis // not recorded /// 0043523 // regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043576 // regulation of respiratory gaseous exchange // not recorded /// 0043576 // regulation of respiratory gaseous exchange // inferred from electronic annotation /// 0045471 // response to ethanol // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // not recorded /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation /// 0048168 // regulation of neuronal synaptic plasticity // not recorded /// 0048168 // regulation of neuronal synaptic plasticity // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // not recorded /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from direct assay /// 0048814 // regulation of dendrite morphogenesis // not recorded /// 0048814 // regulation of dendrite morphogenesis // inferred from electronic annotation /// 0050770 // regulation of axonogenesis // not recorded /// 0050770 // regulation of axonogenesis // inferred from electronic annotation /// 0050905 // neuromuscular process // not recorded /// 0050905 // neuromuscular process // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from expression pattern /// 0051963 // regulation of synaptogenesis // not recorded /// 0051963 // regulation of synaptogenesis // inferred from electronic annotation /// 0055074 // calcium ion homeostasis // not recorded /// 0055074 // calcium ion homeostasis // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060134 // prepulse inhibition // not recorded /// 0060134 // prepulse inhibition // inferred from electronic annotation /// 0060179 // male mating behavior // not recorded /// 0060179 // male mating behavior // inferred from electronic annotation /// 0060992 // response to fungicide // inferred from expression pattern /// 0070588 // calcium ion transmembrane transport // not recorded /// 0071287 // cellular response to manganese ion // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // not recorded /// 0008021 // synaptic vesicle // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // not recorded /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016600 // flotillin complex // inferred from physical interaction /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // inferred from direct assay /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // not recorded /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // traceable author statement /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030288 // outer membrane-bounded periplasmic space // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0043083 // synaptic cleft // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043197 // dendritic spine // not recorded /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0045211 // postsynaptic membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from direct assay /// 0004970 // ionotropic glutamate receptor activity // traceable author statement /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from direct assay /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from genetic interaction /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from mutant phenotype /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // not recorded /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // traceable author statement /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from mutant phenotype /// 0005261 // cation channel activity // not recorded /// 0005261 // cation channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // inferred from direct assay /// 0005262 // calcium channel activity // not recorded /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0016594 // glycine binding // inferred from direct assay /// 0016594 // glycine binding // not recorded /// 0016594 // glycine binding // traceable author statement /// 0016595 // glutamate binding // inferred from direct assay /// 0016595 // glutamate binding // not recorded /// 0022843 // voltage-gated cation channel activity // inferred from mutant phenotype /// 0035254 // glutamate receptor binding // inferred from physical interaction /// 0042165 // neurotransmitter binding // inferred from direct assay 1368573_at NM_017063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017063.1 /DB_XREF=gi:8393609 /GEN=Impnb /FEA=FLmRNA /CNT=6 /TID=Rn.11061.1 /TIER=FL /STK=4 /UG=Rn.11061 /LL=24917 /DEF=Rattus norvegicus Importin beta (Impnb), mRNA. /PROD=importin beta /FL=gb:NM_017063.1 gb:L38644.1 NM_017063 karyopherin (importin) beta 1 Kpnb1 24917 NM_017063 0006606 // protein import into nucleus // not recorded /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006610 // ribosomal protein import into nucleus // inferred from electronic annotation /// 0006610 // ribosomal protein import into nucleus // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0008565 // protein transporter activity // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded 1368574_at NM_016991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_016991.1 /DB_XREF=gi:8392866 /GEN=Adra1b /FEA=FLmRNA /CNT=6 /TID=Rn.10032.1 /TIER=FL /STK=4 /UG=Rn.10032 /LL=24173 /DEF=Rattus norvegicus Adrenergic, alpha 1B-, receptor (Adra1b), mRNA. /PROD=adrenergic, alpha 1B-, receptor /FL=gb:M60655.1 gb:NM_016991.1 NM_016991 adrenergic, alpha-1B-, receptor Adra1b 24173 NM_016991 0001974 // blood vessel remodeling // not recorded /// 0001975 // response to amphetamine // not recorded /// 0001987 // vasoconstriction of artery involved in baroreceptor response to lowering of systemic arterial blood pressure // not recorded /// 0001996 // positive regulation of heart rate by epinephrine-norepinephrine // not recorded /// 0001997 // positive regulation of the force of heart contraction by epinephrine-norepinephrine // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007512 // adult heart development // not recorded /// 0007626 // locomotory behavior // not recorded /// 0008542 // visual learning // not recorded /// 0009725 // response to hormone stimulus // inferred from mutant phenotype /// 0016049 // cell growth // not recorded /// 0035024 // negative regulation of Rho protein signal transduction // inferred from mutant phenotype /// 0035265 // organ growth // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042593 // glucose homeostasis // not recorded /// 0043278 // response to morphine // not recorded /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045818 // negative regulation of glycogen catabolic process // not recorded /// 0045819 // positive regulation of glycogen catabolic process // not recorded /// 0048148 // behavioral response to cocaine // not recorded /// 0048545 // response to steroid hormone stimulus // inferred from mutant phenotype 0000299 // integral to membrane of membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004935 // adrenergic receptor activity // inferred from electronic annotation /// 0004937 // alpha1-adrenergic receptor activity // inferred from direct assay /// 0004937 // alpha1-adrenergic receptor activity // not recorded /// 0004937 // alpha1-adrenergic receptor activity // inferred from electronic annotation 1368575_at NM_017163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017163.1 /DB_XREF=gi:8394203 /GEN=Xtrp2 /FEA=FLmRNA /CNT=6 /TID=Rn.9998.1 /TIER=FL /STK=4 /UG=Rn.9998 /LL=29323 /DEF=Rattus norvegicus X transporter protein 2 (Xtrp2), mRNA. /PROD=X transporter protein 2 /FL=gb:NM_017163.1 gb:U12973.1 NM_017163 solute carrier family 6, member 18 Slc6a18 29323 NM_017163 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded /// 0006970 // response to osmotic stress // inferred from expression pattern /// 0006972 // hyperosmotic response // inferred from expression pattern /// 0006972 // hyperosmotic response // non-traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation 1368576_at NM_012921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012921.1 /DB_XREF=gi:6978600 /GEN=Cart1 /FEA=FLmRNA /CNT=6 /TID=Rn.9282.1 /TIER=FL /STK=4 /UG=Rn.9282 /LL=25401 /DEF=Rattus norvegicus Cartilage homeo protein 1 (Cart1), mRNA. /PROD=cartilage homeo protein 1 /FL=gb:L14018.1 gb:NM_012921.1 NM_012921 ALX homeobox 1 Alx1 25401 NM_012921 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001501 // skeletal system development // traceable author statement /// 0001843 // neural tube closure // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0014031 // mesenchymal cell development // inferred from electronic annotation /// 0014031 // mesenchymal cell development // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1368577_at NM_053388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053388.1 /DB_XREF=gi:17865328 /GEN=Gjb6 /FEA=FLmRNA /CNT=6 /TID=Rn.18935.1 /TIER=FL /STK=4 /UG=Rn.18935 /LL=84403 /DEF=Rattus norvegicus gap junction protein, beta 6 (connexin 30) (Gjb6), mRNA. /PROD=gap junction protein, beta 6 (connexin 30) /FL=gb:AF170284.1 gb:NM_053388.1 NM_053388 gap junction protein, beta 6 Gjb6 84403 NM_053388 0006915 // apoptosis // inferred from expression pattern /// 0007154 // cell communication // non-traceable author statement /// 0007154 // cell communication // inferred from electronic annotation /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0042471 // ear morphogenesis // inferred from electronic annotation /// 0042471 // ear morphogenesis // not recorded /// 0048839 // inner ear development // inferred from expression pattern 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005921 // gap junction // inferred from direct assay /// 0005921 // gap junction // not recorded /// 0005921 // gap junction // inferred from electronic annotation /// 0005922 // connexon complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368578_at NM_017265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017265.1 /DB_XREF=gi:8393578 /GEN=Hsd3b1 /FEA=FLmRNA /CNT=6 /TID=Rn.11311.1 /TIER=FL /STK=4 /UG=Rn.11311 /LL=29632 /DEF=Rattus norvegicus Hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase (Hsd3b1), mRNA. /PROD=hydroxysteroid dehydrogenase-6, delta<5>-3-beta /FL=gb:M38179.1 gb:M38178.1 gb:NM_017265.1 NM_017265 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 Hsd3b1 360348 NM_001007719 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006701 // progesterone biosynthetic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003854 // 3-beta-hydroxy-delta5-steroid dehydrogenase activity // inferred from direct assay /// 0003854 // 3-beta-hydroxy-delta5-steroid dehydrogenase activity // inferred from electronic annotation /// 0004769 // steroid delta-isomerase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005496 // steroid binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from direct assay 1368579_at NM_053791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053791.1 /DB_XREF=gi:16758631 /GEN=Prlpm /FEA=FLmRNA /CNT=6 /TID=Rn.17940.1 /TIER=FL /STK=4 /UG=Rn.17940 /LL=116474 /DEF=Rattus norvegicus prolactin-like protein M (Prlpm), mRNA. /PROD=prolactin-like protein M /FL=gb:AF226608.1 gb:NM_053791.1 NM_053791 Prolactin family 2, subfamily a, member 1 Prl2a1 116474 NM_053791 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation 1368580_at NM_053893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053893.1 /DB_XREF=gi:16758763 /GEN=Sdc3 /FEA=FLmRNA /CNT=5 /TID=Rn.10504.1 /TIER=FL /STK=4 /UG=Rn.10504 /LL=116673 /DEF=Rattus norvegicus syndecan 3 (Sdc3), mRNA. /PROD=syndecan 3 /FL=gb:U52825.1 gb:NM_053893.1 gb:U73184.1 NM_053893 syndecan 3 Sdc3 116673 NM_053893 0007155 // cell adhesion // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 1368581_at U73184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U73184.1 /DB_XREF=gi:1657817 /FEA=FLmRNA /CNT=5 /TID=Rn.10504.1 /TIER=FL /STK=1 /UG=Rn.10504 /LL=116673 /UG_GENE=Sdc3 /DEF=Rattus norvegicus N-syndecan mRNA, complete cds. /PROD=N-syndecan /FL=gb:U52825.1 gb:NM_053893.1 gb:U73184.1 U73184 syndecan 3 Sdc3 116673 NM_053893 0007155 // cell adhesion // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 1368582_at NM_017217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017217.1 /DB_XREF=gi:8392943 /GEN=Slc7a3 /FEA=FLmRNA /CNT=5 /TID=Rn.9804.1 /TIER=FL /STK=4 /UG=Rn.9804 /LL=29485 /DEF=Rattus norvegicus solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 (Slc7a3), mRNA. /PROD=solute carrier family 7 (cationic amino acidtransporter, y+ system), member 3 /FL=gb:NM_017217.1 gb:AB000113.1 NM_017217 solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 Slc7a3 29485 NM_017217 0003333 // amino acid transmembrane transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006865 // amino acid transport // not recorded /// 0006865 // amino acid transport // inferred from electronic annotation /// 0015807 // L-amino acid transport // not recorded /// 0015809 // arginine transport // inferred from direct assay /// 0015809 // arginine transport // inferred from mutant phenotype /// 0015809 // arginine transport // not recorded /// 0015809 // arginine transport // inferred from electronic annotation /// 0015819 // lysine transport // inferred from direct assay /// 0015819 // lysine transport // not recorded /// 0015822 // ornithine transport // inferred from direct assay /// 0032006 // regulation of TOR signaling cascade // inferred from mutant phenotype /// 0034220 // ion transmembrane transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred by curator /// 0016021 // integral to membrane // inferred from electronic annotation 0000064 // L-ornithine transmembrane transporter activity // inferred from direct assay /// 0015171 // amino acid transmembrane transporter activity // not recorded /// 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015181 // arginine transmembrane transporter activity // inferred from direct assay /// 0015181 // arginine transmembrane transporter activity // not recorded /// 0015181 // arginine transmembrane transporter activity // inferred from electronic annotation /// 0015189 // L-lysine transmembrane transporter activity // inferred from direct assay /// 0015189 // L-lysine transmembrane transporter activity // not recorded /// 0015189 // L-lysine transmembrane transporter activity // inferred from electronic annotation /// 0015326 // cationic amino acid transmembrane transporter activity // inferred from direct assay /// 0015326 // cationic amino acid transmembrane transporter activity // not recorded /// 0015326 // cationic amino acid transmembrane transporter activity // inferred from electronic annotation 1368583_a_at NM_133428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133428.1 /DB_XREF=gi:19173805 /GEN=Hrg /FEA=FLmRNA /CNT=5 /TID=Rn.16100.1 /TIER=FL /STK=4 /UG=Rn.16100 /LL=171016 /DEF=Rattus norvegicus histidine-rich glycoprotein (Hrg), mRNA. /PROD=histidine-rich glycoprotein /FL=gb:AB055895.1 gb:NM_133428.1 NM_133428 histidine-rich glycoprotein Hrg 171016 NM_133428 0010951 // negative regulation of endopeptidase activity // not recorded /// 0051918 // negative regulation of fibrinolysis // not recorded /// 0051918 // negative regulation of fibrinolysis // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0031093 // platelet alpha granule lumen // not recorded 0004867 // serine-type endopeptidase inhibitor activity // not recorded /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation 1368584_a_at NM_053878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053878.1 /DB_XREF=gi:16758743 /GEN=Cplx2 /FEA=FLmRNA /CNT=5 /TID=Rn.10134.1 /TIER=FL /STK=4 /UG=Rn.10134 /LL=116657 /DEF=Rattus norvegicus complexin 2 (Cplx2), mRNA. /PROD=complexin 2 /FL=gb:NM_053878.1 gb:D70816.1 NM_053878 complexin 2 Cplx2 116657 NM_053878 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0006904 // vesicle docking involved in exocytosis // traceable author statement /// 0016079 // synaptic vesicle exocytosis // inferred from direct assay /// 0043303 // mast cell degranulation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0031201 // SNARE complex // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation 0000149 // SNARE binding // inferred from direct assay /// 0017075 // syntaxin-1 binding // inferred from direct assay /// 0019905 // syntaxin binding // inferred from electronic annotation 1368585_at NM_017110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017110.1 /DB_XREF=gi:8393048 /GEN=Cart /FEA=FLmRNA /CNT=5 /TID=Rn.10201.1 /TIER=FL /STK=4 /UG=Rn.10201 /LL=29131 /DEF=Rattus norvegicus cocaine and amphetamine regulated transcript (Cart), mRNA. /PROD=cocaine and amphetamine regulated transcript /FL=gb:NM_017110.1 gb:U10071.1 NM_017110 CART prepropeptide Cartpt 29131 NM_017110 0000186 // activation of MAPKK activity // inferred from direct assay /// 0000186 // activation of MAPKK activity // not recorded /// 0000186 // activation of MAPKK activity // inferred from electronic annotation /// 0001678 // cellular glucose homeostasis // not recorded /// 0001678 // cellular glucose homeostasis // inferred from sequence or structural similarity /// 0001678 // cellular glucose homeostasis // inferred from electronic annotation /// 0001696 // gastric acid secretion // traceable author statement /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0008343 // adult feeding behavior // inferred from direct assay /// 0008343 // adult feeding behavior // not recorded /// 0008343 // adult feeding behavior // inferred from electronic annotation /// 0009267 // cellular response to starvation // inferred from direct assay /// 0009267 // cellular response to starvation // not recorded /// 0009267 // cellular response to starvation // inferred from electronic annotation /// 0032099 // negative regulation of appetite // inferred from direct assay /// 0032099 // negative regulation of appetite // not recorded /// 0032099 // negative regulation of appetite // inferred from electronic annotation /// 0032812 // positive regulation of epinephrine secretion // not recorded /// 0032812 // positive regulation of epinephrine secretion // inferred from sequence or structural similarity /// 0032812 // positive regulation of epinephrine secretion // inferred from electronic annotation /// 0032922 // circadian regulation of gene expression // inferred from direct assay /// 0045777 // positive regulation of blood pressure // not recorded /// 0045777 // positive regulation of blood pressure // inferred from sequence or structural similarity /// 0045777 // positive regulation of blood pressure // inferred from electronic annotation /// 0045779 // negative regulation of bone resorption // inferred from electronic annotation /// 0045779 // negative regulation of bone resorption // not recorded /// 0046850 // regulation of bone remodeling // inferred from electronic annotation /// 0046850 // regulation of bone remodeling // not recorded /// 0050796 // regulation of insulin secretion // inferred from direct assay /// 0051971 // positive regulation of transmission of nerve impulse // not recorded /// 0051971 // positive regulation of transmission of nerve impulse // inferred from sequence or structural similarity /// 0051971 // positive regulation of transmission of nerve impulse // inferred from electronic annotation /// 0070093 // negative regulation of glucagon secretion // inferred from direct assay /// 0070253 // somatostatin secretion // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation 1368586_at NM_134409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134409.1 /DB_XREF=gi:19705540 /GEN=Zg-16p /FEA=FLmRNA /CNT=5 /TID=Rn.10439.1 /TIER=FL /STK=4 /UG=Rn.10439 /LL=171449 /DEF=Rattus norvegicus ZG-16p protein (Zg-16p), mRNA. /PROD=ZG-16p protein /FL=gb:NM_134409.1 NM_134409 zymogen granule protein 16 Zg16 171449 NM_134409 0005576 // extracellular region // inferred from electronic annotation /// 0042589 // zymogen granule membrane // inferred from direct assay 0005529 // sugar binding // inferred from electronic annotation 1368587_at NM_012824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012824.1 /DB_XREF=gi:6978520 /GEN=Apoc1 /FEA=FLmRNA /CNT=5 /TID=Rn.8887.1 /TIER=FL /STK=4 /UG=Rn.8887 /LL=25292 /DEF=Rattus norvegicus Apolipoprotein C1 (Apoc1), mRNA. /PROD=apolipoprotein C1 /FL=gb:NM_012824.1 NM_012824 apolipoprotein C-I Apoc1 25292 NM_001109996 /// NM_012824 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0010900 // negative regulation of phosphatidylcholine catabolic process // inferred from electronic annotation /// 0010900 // negative regulation of phosphatidylcholine catabolic process // not recorded /// 0010916 // negative regulation of very-low-density lipoprotein particle clearance // inferred from electronic annotation /// 0010916 // negative regulation of very-low-density lipoprotein particle clearance // not recorded /// 0032368 // regulation of lipid transport // inferred from direct assay /// 0032375 // negative regulation of cholesterol transport // inferred from electronic annotation /// 0032375 // negative regulation of cholesterol transport // not recorded /// 0033344 // cholesterol efflux // inferred from electronic annotation /// 0033344 // cholesterol efflux // not recorded /// 0033700 // phospholipid efflux // inferred from electronic annotation /// 0033700 // phospholipid efflux // not recorded /// 0034369 // plasma lipoprotein particle remodeling // inferred from electronic annotation /// 0034369 // plasma lipoprotein particle remodeling // not recorded /// 0034382 // chylomicron remnant clearance // inferred from electronic annotation /// 0034382 // chylomicron remnant clearance // not recorded /// 0034447 // very-low-density lipoprotein particle clearance // not recorded /// 0034447 // very-low-density lipoprotein particle clearance // inferred from electronic annotation /// 0042157 // lipoprotein metabolic process // traceable author statement /// 0042157 // lipoprotein metabolic process // inferred from electronic annotation /// 0045717 // negative regulation of fatty acid biosynthetic process // inferred from electronic annotation /// 0045717 // negative regulation of fatty acid biosynthetic process // not recorded /// 0045833 // negative regulation of lipid metabolic process // not recorded /// 0045833 // negative regulation of lipid metabolic process // inferred from electronic annotation /// 0048261 // negative regulation of receptor-mediated endocytosis // inferred from electronic annotation /// 0048261 // negative regulation of receptor-mediated endocytosis // not recorded /// 0050995 // negative regulation of lipid catabolic process // not recorded /// 0050995 // negative regulation of lipid catabolic process // inferred from electronic annotation /// 0051005 // negative regulation of lipoprotein lipase activity // inferred from electronic annotation /// 0051005 // negative regulation of lipoprotein lipase activity // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0034361 // very-low-density lipoprotein particle // inferred from direct assay /// 0034361 // very-low-density lipoprotein particle // not recorded /// 0034361 // very-low-density lipoprotein particle // inferred from electronic annotation /// 0034364 // high-density lipoprotein particle // inferred from direct assay /// 0034364 // high-density lipoprotein particle // not recorded /// 0034364 // high-density lipoprotein particle // inferred from electronic annotation 0004859 // phospholipase inhibitor activity // inferred from electronic annotation /// 0004859 // phospholipase inhibitor activity // not recorded /// 0005504 // fatty acid binding // inferred from electronic annotation /// 0005504 // fatty acid binding // not recorded /// 0055102 // lipase inhibitor activity // not recorded /// 0055102 // lipase inhibitor activity // inferred from electronic annotation 1368588_at NM_053525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053525.1 /DB_XREF=gi:16758983 /GEN=Rok1 /FEA=FLmRNA /CNT=9 /TID=Rn.18605.1 /TIER=FL /STK=4 /UG=Rn.18605 /LL=85432 /DEF=Rattus norvegicus ATP-dependent, RNA helicase (Rok1), mRNA. /PROD=ATP-dependent, RNA helicase /FL=gb:NM_053525.1 gb:AB055628.1 NM_053525 DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 Ddx52 85432 NM_053525 0006364 // rRNA processing // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003724 // RNA helicase activity // non-traceable author statement /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1368589_at NM_017269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017269.1 /DB_XREF=gi:8394111 /GEN=Ptprj /FEA=FLmRNA /CNT=8 /TID=Rn.10278.1 /TIER=FL /STK=4 /UG=Rn.10278 /LL=29645 /DEF=Rattus norvegicus Protein tyrosine phosphatase, receptor type, J (Ptprj), mRNA. /PROD=protein tyrosine phosphatase, receptor type, J /FL=gb:NM_017269.1 gb:U40790.1 NM_017269 protein tyrosine phosphatase, receptor type, J Ptprj 29645 NM_017269 0001570 // vasculogenesis // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005886 // plasma membrane // not recorded /// 0030054 // cell junction // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1368590_at NM_080776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080776.1 /DB_XREF=gi:18158442 /GEN=Mmp16 /FEA=FLmRNA /CNT=8 /TID=Rn.52536.1 /TIER=FL /STK=4 /UG=Rn.52536 /DEF=Rattus norvegicus matrix metalloproteinase 16 (Mmp16), mRNA. /PROD=matrix metalloproteinase 16 /FL=gb:NM_080776.1 NM_080776 matrix metallopeptidase 16 Mmp16 65205 NM_080776 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0030574 // collagen catabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368591_at NM_031139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031139.1 /DB_XREF=gi:13592124 /GEN=Usf2 /FEA=FLmRNA /CNT=6 /TID=Rn.44637.1 /TIER=FL /STK=4 /UG=Rn.44637 /LL=81817 /DEF=Rattus norvegicus transcription factor USF2 (Usf2), mRNA. /PROD=transcription factor USF2 /FL=gb:AB047556.1 gb:NM_031139.1 gb:AB035647.1 NM_031139 upstream transcription factor 2, c-fos interacting Usf2 81817 NM_031139 0000432 // positive regulation of transcription from RNA polymerase II promoter by glucose // inferred from electronic annotation /// 0000432 // positive regulation of transcription from RNA polymerase II promoter by glucose // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007595 // lactation // inferred from electronic annotation /// 0007595 // lactation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0055088 // lipid homeostasis // inferred from electronic annotation /// 0055088 // lipid homeostasis // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from mutant phenotype /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0043425 // bHLH transcription factor binding // inferred from electronic annotation /// 0043425 // bHLH transcription factor binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from mutant phenotype /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 1368592_at NM_017019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017019.1 /DB_XREF=gi:8393592 /GEN=Il1a /FEA=FLmRNA /CNT=6 /TID=Rn.12300.1 /TIER=FL /STK=4 /UG=Rn.12300 /LL=24493 /DEF=Rattus norvegicus Interleukin 1 alpha (Il1a), mRNA. /PROD=interleukin 1 alpha /FL=gb:NM_017019.1 gb:D00403.1 NM_017019 interleukin 1 alpha Il1a 24493 NM_017019 0001660 // fever // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from expression pattern /// 0006954 // inflammatory response // non-traceable author statement /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009408 // response to heat // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0010193 // response to ozone // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010332 // response to gamma radiation // inferred from expression pattern /// 0010575 // positive regulation vascular endothelial growth factor production // inferred from electronic annotation /// 0010575 // positive regulation vascular endothelial growth factor production // not recorded /// 0010893 // positive regulation of steroid biosynthetic process // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0031424 // keratinization // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032755 // positive regulation of interleukin-6 production // inferred from mutant phenotype /// 0032874 // positive regulation of stress-activated MAPK cascade // inferred from direct assay /// 0033591 // response to L-ascorbic acid // inferred from expression pattern /// 0034605 // cellular response to heat // not recorded /// 0034605 // cellular response to heat // inferred from sequence or structural similarity /// 0034605 // cellular response to heat // inferred from electronic annotation /// 0042060 // wound healing // inferred from expression pattern /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from direct assay /// 0045086 // positive regulation of interleukin-2 biosynthetic process // inferred from electronic annotation /// 0045086 // positive regulation of interleukin-2 biosynthetic process // not recorded /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0045840 // positive regulation of mitosis // inferred from electronic annotation /// 0045840 // positive regulation of mitosis // not recorded /// 0046330 // positive regulation of JNK cascade // inferred from direct assay /// 0046688 // response to copper ion // not recorded /// 0046688 // response to copper ion // inferred from sequence or structural similarity /// 0046688 // response to copper ion // inferred from electronic annotation /// 0050715 // positive regulation of cytokine secretion // inferred from electronic annotation /// 0050715 // positive regulation of cytokine secretion // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0051930 // regulation of sensory perception of pain // inferred from direct assay /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay 0005125 // cytokine activity // inferred from mutant phenotype /// 0005125 // cytokine activity // not recorded /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005149 // interleukin-1 receptor binding // inferred from electronic annotation /// 0005150 // interleukin-1, Type I receptor binding // non-traceable author statement /// 0005507 // copper ion binding // not recorded /// 0005507 // copper ion binding // inferred from sequence or structural similarity /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368593_at NM_017079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017079.1 /DB_XREF=gi:8393069 /GEN=Cd1d /FEA=FLmRNA /CNT=6 /TID=Rn.11120.1 /TIER=FL /STK=4 /UG=Rn.11120 /LL=25109 /DEF=Rattus norvegicus CD1D antigen (Cd1d), mRNA. /PROD=CD1D antigen, also localized to RNO7q32 but ispresumably on chromosome 2 /FL=gb:NM_017079.1 gb:D26439.2 NM_017079 CD1d1 molecule Cd1d1 25109 NM_017079 0001916 // positive regulation of T cell mediated cytotoxicity // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0019882 // antigen processing and presentation // not recorded /// 0045059 // positive thymic T cell selection // not recorded /// 0045078 // positive regulation of interferon-gamma biosynthetic process // not recorded /// 0045086 // positive regulation of interleukin-2 biosynthetic process // not recorded /// 0045087 // innate immune response // inferred from electronic annotation /// 0045404 // positive regulation of interleukin-4 biosynthetic process // not recorded /// 0048006 // antigen processing and presentation, endogenous lipid antigen via MHC class Ib // inferred from electronic annotation /// 0048006 // antigen processing and presentation, endogenous lipid antigen via MHC class Ib // not recorded /// 0048007 // antigen processing and presentation, exogenous lipid antigen via MHC class Ib // not recorded /// 0050776 // regulation of immune response // not recorded /// 0051135 // positive regulation of NK T cell activation // not recorded /// 0051138 // positive regulation of NK T cell differentiation // not recorded 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005770 // late endosome // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0030883 // endogenous lipid antigen binding // not recorded /// 0030884 // exogenous lipid antigen binding // inferred from electronic annotation /// 0030884 // exogenous lipid antigen binding // not recorded 1368594_at NM_019202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019202.1 /DB_XREF=gi:9506976 /GEN=Pla2g2c /FEA=FLmRNA /CNT=5 /TID=Rn.46424.1 /TIER=FL /STK=4 /UG=Rn.46424 /LL=29387 /DEF=Rattus norvegicus phospholipase A2, group IIC (Pla2g2c), mRNA. /PROD=phospholipase A2, group IIC /FL=gb:NM_019202.1 gb:U07798.1 NM_019202 phospholipase A2, group IIC Pla2g2c 29387 NM_019202 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0004623 // phospholipase A2 activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047498 // calcium-dependent phospholipase A2 activity // inferred from direct assay 1368595_at NM_031757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031757.1 /DB_XREF=gi:13929063 /GEN=Mmp24 /FEA=FLmRNA /CNT=5 /TID=Rn.3117.1 /TIER=FL /STK=4 /UG=Rn.3117 /LL=83513 /DEF=Rattus norvegicus matrix metalloproteinase 24 (membrane-inserted) (Mmp24), mRNA. /PROD=matrix metalloproteinase 24 (membrane-inserted) /FL=gb:AB023659.1 gb:NM_031757.1 NM_031757 matrix metallopeptidase 24 Mmp24 83513 NM_031757 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008233 // peptidase activity // traceable author statement /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368596_at NM_021693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021693.1 /DB_XREF=gi:11067424 /GEN=LOC59329 /FEA=FLmRNA /CNT=5 /TID=Rn.42905.1 /TIER=FL /STK=4 /UG=Rn.42905 /LL=59329 /DEF=Rattus norvegicus salt-inducible protein kinase (LOC59329), mRNA. /PROD=salt-inducible protein kinase /FL=gb:NM_021693.1 gb:AB020480.1 gb:AF106937.1 NM_021693 salt-inducible kinase 1 Sik1 59329 NM_021693 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from sequence or structural similarity /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007346 // regulation of mitotic cell cycle // not recorded /// 0007346 // regulation of mitotic cell cycle // inferred from sequence or structural similarity /// 0007346 // regulation of mitotic cell cycle // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // not recorded /// 0045595 // regulation of cell differentiation // inferred from sequence or structural similarity /// 0045595 // regulation of cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from mutant phenotype 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from mutant phenotype /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from mutant phenotype /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368597_at AB020480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB020480.1 /DB_XREF=gi:5672675 /GEN=SIK /FEA=FLmRNA /CNT=5 /TID=Rn.42905.1 /TIER=FL /STK=1 /UG=Rn.42905 /LL=59329 /DEF=Rattus norvegicus mRNA for salt-inducible protein kinase, complete cds. /PROD=salt-inducible protein kinase /FL=gb:NM_021693.1 gb:AB020480.1 gb:AF106937.1 AB020480 salt-inducible kinase 1 Sik1 59329 NM_021693 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from sequence or structural similarity /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007346 // regulation of mitotic cell cycle // not recorded /// 0007346 // regulation of mitotic cell cycle // inferred from sequence or structural similarity /// 0007346 // regulation of mitotic cell cycle // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // not recorded /// 0045595 // regulation of cell differentiation // inferred from sequence or structural similarity /// 0045595 // regulation of cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from mutant phenotype 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from mutant phenotype /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from mutant phenotype /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368598_at NM_133522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133522.1 /DB_XREF=gi:19424167 /GEN=Smstr28 /FEA=FLmRNA /CNT=5 /TID=Rn.10458.1 /TIER=FL /STK=4 /UG=Rn.10458 /LL=171044 /DEF=Rattus norvegicus somatostatin receptor 28 (Smstr28), mRNA. /PROD=somatostatin receptor 28 /FL=gb:NM_133522.1 NM_133522 somatostatin receptor 3 Sstr3 171044 NM_133522 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0021549 // cerebellum development // inferred from expression pattern /// 0030900 // forebrain development // inferred from expression pattern /// 0042594 // response to starvation // inferred from expression pattern /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern /// 0071392 // cellular response to estradiol stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031513 // nonmotile primary cilium // inferred from electronic annotation /// 0031513 // nonmotile primary cilium // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004994 // somatostatin receptor activity // inferred from electronic annotation 1368599_at NM_012653 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012653.1 /DB_XREF=gi:6981559 /GEN=Slc9a2 /FEA=FLmRNA /CNT=5 /TID=Rn.11047.1 /TIER=FL /STK=4 /UG=Rn.11047 /LL=24783 /DEF=Rattus norvegicus Solute carrier family 9 (sodiumhydrogen exchanger 2), antiporter 2, Na+H+ (Na+H+ exchanger 2) (Slc9a2), mRNA. /PROD=solute carrier family 9 (sodiumhydrogenexchanger 2), antiporter 2, Na+H+ (Na+H+ exchanger 2) /FL=gb:NM_012653.1 gb:L11004.1 NM_012653 solute carrier family 9 (sodium/hydrogen exchanger), member 2 Slc9a2 24783 NM_001113335 /// NM_012653 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // not recorded /// 0006885 // regulation of pH // inferred from electronic annotation /// 0006885 // regulation of pH // not recorded /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0015992 // proton transport // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // traceable author statement 0015297 // antiporter activity // inferred from electronic annotation /// 0015299 // solute:hydrogen antiporter activity // inferred from electronic annotation /// 0015385 // sodium:hydrogen antiporter activity // inferred from direct assay /// 0015385 // sodium:hydrogen antiporter activity // not recorded /// 0015385 // sodium:hydrogen antiporter activity // inferred from electronic annotation 1368600_at NM_022287 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022287.1 /DB_XREF=gi:11560116 /GEN=sat-1 /FEA=FLmRNA /CNT=5 /TID=Rn.10016.1 /TIER=FL /STK=4 /UG=Rn.10016 /LL=64076 /DEF=Rattus norvegicus sulfate anion transporter (sat-1), mRNA. /PROD=sulfate anion transporter /FL=gb:L23413.1 gb:NM_022287.1 NM_022287 solute carrier family 26 (sulfate transporter), member 1 Slc26a1 64076 NM_022287 0006810 // transport // inferred from electronic annotation /// 0006821 // chloride transport // not recorded /// 0006821 // chloride transport // inferred from electronic annotation /// 0008272 // sulfate transport // inferred from direct assay /// 0008272 // sulfate transport // not recorded /// 0008272 // sulfate transport // inferred from electronic annotation /// 0019532 // oxalate transport // not recorded /// 0019532 // oxalate transport // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055085 // transmembrane transport // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0008271 // secondary active sulfate transmembrane transporter activity // inferred from electronic annotation /// 0015108 // chloride transmembrane transporter activity // inferred from electronic annotation /// 0015108 // chloride transmembrane transporter activity // not recorded /// 0015116 // sulfate transmembrane transporter activity // inferred from direct assay /// 0015116 // sulfate transmembrane transporter activity // not recorded /// 0015116 // sulfate transmembrane transporter activity // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation /// 0019531 // oxalate transmembrane transporter activity // inferred from electronic annotation /// 0019531 // oxalate transmembrane transporter activity // not recorded 1368601_at NM_012694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012694.1 /DB_XREF=gi:7106412 /GEN=Slc6a3 /FEA=FLmRNA /CNT=5 /TID=Rn.10093.1 /TIER=FL /STK=4 /UG=Rn.10093 /LL=24898 /DEF=Rattus norvegicus Solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 (Slc6a3), mRNA. /PROD=solute carrier family 6 (neurotransmittertransporter, dopamine), member 3 /FL=gb:NM_012694.1 gb:M80570.1 gb:M80233.1 NM_012694 solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 Slc6a3 24898 NM_012694 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0007595 // lactation // inferred from electronic annotation /// 0007595 // lactation // not recorded /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0007608 // sensory perception of smell // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0010039 // response to iron ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0015844 // monoamine transport // not recorded /// 0015844 // monoamine transport // inferred from electronic annotation /// 0015872 // dopamine transport // inferred from direct assay /// 0015872 // dopamine transport // not recorded /// 0015872 // dopamine transport // inferred from electronic annotation /// 0021984 // adenohypophysis development // inferred from electronic annotation /// 0021984 // adenohypophysis development // not recorded /// 0035094 // response to nicotine // inferred from expression pattern /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0042053 // regulation of dopamine metabolic process // inferred from electronic annotation /// 0042053 // regulation of dopamine metabolic process // not recorded /// 0042220 // response to cocaine // inferred from electronic annotation /// 0042220 // response to cocaine // not recorded /// 0042416 // dopamine biosynthetic process // inferred from electronic annotation /// 0042416 // dopamine biosynthetic process // not recorded /// 0042420 // dopamine catabolic process // inferred from electronic annotation /// 0042420 // dopamine catabolic process // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045471 // response to ethanol // inferred from direct assay /// 0051591 // response to cAMP // inferred from direct assay /// 0055085 // transmembrane transport // not recorded /// 0060134 // prepulse inhibition // inferred from electronic annotation /// 0060134 // prepulse inhibition // not recorded 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay 0005102 // receptor binding // inferred from physical interaction /// 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0005329 // dopamine transmembrane transporter activity // inferred from direct assay /// 0005329 // dopamine transmembrane transporter activity // not recorded /// 0005329 // dopamine transmembrane transporter activity // inferred from electronic annotation /// 0005330 // dopamine:sodium symporter activity // inferred from direct assay /// 0005330 // dopamine:sodium symporter activity // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0008504 // monoamine transmembrane transporter activity // not recorded /// 0008504 // monoamine transmembrane transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0035240 // dopamine binding // inferred from electronic annotation /// 0035240 // dopamine binding // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1368602_at M80233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M80233.1 /DB_XREF=gi:203980 /GEN=dopamine transporter /FEA=FLmRNA /CNT=5 /TID=Rn.10093.1 /TIER=FL /STK=1 /UG=Rn.10093 /LL=24898 /DEF=Rat cocaine-sensitive dopamine transporter mRNA, complete cds. /PROD=dopamine transporter /FL=gb:NM_012694.1 gb:M80570.1 gb:M80233.1 M80233 solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 Slc6a3 24898 NM_012694 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0007595 // lactation // inferred from electronic annotation /// 0007595 // lactation // not recorded /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0007608 // sensory perception of smell // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0010039 // response to iron ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0015844 // monoamine transport // not recorded /// 0015844 // monoamine transport // inferred from electronic annotation /// 0015872 // dopamine transport // inferred from direct assay /// 0015872 // dopamine transport // not recorded /// 0015872 // dopamine transport // inferred from electronic annotation /// 0021984 // adenohypophysis development // inferred from electronic annotation /// 0021984 // adenohypophysis development // not recorded /// 0035094 // response to nicotine // inferred from expression pattern /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0042053 // regulation of dopamine metabolic process // inferred from electronic annotation /// 0042053 // regulation of dopamine metabolic process // not recorded /// 0042220 // response to cocaine // inferred from electronic annotation /// 0042220 // response to cocaine // not recorded /// 0042416 // dopamine biosynthetic process // inferred from electronic annotation /// 0042416 // dopamine biosynthetic process // not recorded /// 0042420 // dopamine catabolic process // inferred from electronic annotation /// 0042420 // dopamine catabolic process // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045471 // response to ethanol // inferred from direct assay /// 0051591 // response to cAMP // inferred from direct assay /// 0055085 // transmembrane transport // not recorded /// 0060134 // prepulse inhibition // inferred from electronic annotation /// 0060134 // prepulse inhibition // not recorded 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay 0005102 // receptor binding // inferred from physical interaction /// 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0005329 // dopamine transmembrane transporter activity // inferred from direct assay /// 0005329 // dopamine transmembrane transporter activity // not recorded /// 0005329 // dopamine transmembrane transporter activity // inferred from electronic annotation /// 0005330 // dopamine:sodium symporter activity // inferred from direct assay /// 0005330 // dopamine:sodium symporter activity // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0008504 // monoamine transmembrane transporter activity // not recorded /// 0008504 // monoamine transmembrane transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0035240 // dopamine binding // inferred from electronic annotation /// 0035240 // dopamine binding // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1368603_at NM_012491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012491.1 /DB_XREF=gi:6978448 /GEN=Add2 /FEA=FLmRNA /CNT=5 /TID=Rn.11353.1 /TIER=FL /STK=4 /UG=Rn.11353 /LL=24171 /DEF=Rattus norvegicus Adducin, beta (Add2), mRNA. /PROD=adducin, beta /FL=gb:M63894.1 gb:NM_012491.1 NM_012491 adducin 2 (beta) Add2 24171 NM_001109880 /// NM_012491 0006811 // ion transport // inferred from mutant phenotype /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded /// 0032092 // positive regulation of protein binding // inferred from electronic annotation /// 0032092 // positive regulation of protein binding // not recorded /// 0051016 // barbed-end actin filament capping // inferred from electronic annotation /// 0051016 // barbed-end actin filament capping // not recorded /// 0051017 // actin filament bundle assembly // inferred from electronic annotation /// 0051017 // actin filament bundle assembly // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // non-traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008290 // F-actin capping protein complex // inferred from electronic annotation /// 0008290 // F-actin capping protein complex // not recorded /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005198 // structural molecule activity // not recorded /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // non-traceable author statement /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0030507 // spectrin binding // inferred from electronic annotation /// 0030507 // spectrin binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0051015 // actin filament binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1368604_at NM_031634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031634.1 /DB_XREF=gi:13928875 /GEN=Mefv /FEA=FLmRNA /CNT=5 /TID=Rn.29105.1 /TIER=FL /STK=4 /UG=Rn.29105 /LL=58923 /DEF=Rattus norvegicus Mediterranean fever (Mefv), mRNA. /PROD=Mediterranean fever /FL=gb:AF143410.1 gb:NM_031634.1 NM_031634 Mediterranean fever Mefv 58923 NM_031634 0006954 // inflammatory response // not recorded /// 0006954 // inflammatory response // inferred from sequence or structural similarity /// 0006954 // inflammatory response // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // not recorded /// 0005875 // microtubule associated complex // inferred from sequence or structural similarity /// 0005875 // microtubule associated complex // inferred from electronic annotation 0003779 // actin binding // not recorded /// 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // non-traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368605_at NM_053669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053669.1 /DB_XREF=gi:16758939 /GEN=Aps /FEA=FLmRNA /CNT=5 /TID=Rn.30041.1 /TIER=FL /STK=4 /UG=Rn.30041 /LL=114203 /DEF=Rattus norvegicus adaptor protein with pleckstrin homology and src homology 2 domains (Aps), mRNA. /PROD=adaptor protein with pleckstrin homology and srchomology 2 domains /FL=gb:AF095576.1 gb:NM_053669.1 NM_053669 SH2B adaptor protein 2 Sh2b2 114203 NM_053669 0001922 // B-1 B cell homeostasis // inferred from electronic annotation /// 0001922 // B-1 B cell homeostasis // not recorded /// 0007399 // nervous system development // inferred from mutant phenotype /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019222 // regulation of metabolic process // inferred from electronic annotation /// 0019222 // regulation of metabolic process // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0046578 // regulation of Ras protein signal transduction // inferred from direct assay /// 0050776 // regulation of immune response // inferred from electronic annotation /// 0050776 // regulation of immune response // not recorded /// 0050851 // antigen receptor-mediated signaling pathway // inferred from electronic annotation /// 0050851 // antigen receptor-mediated signaling pathway // not recorded /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded 0001725 // stress fiber // inferred from electronic annotation /// 0001725 // stress fiber // not recorded /// 0001726 // ruffle // inferred from electronic annotation /// 0001726 // ruffle // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005884 // actin filament // inferred from electronic annotation /// 0005884 // actin filament // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0005068 // transmembrane receptor protein tyrosine kinase adaptor protein activity // inferred from electronic annotation /// 0005068 // transmembrane receptor protein tyrosine kinase adaptor protein activity // not recorded /// 0005070 // SH3/SH2 adaptor activity // inferred from electronic annotation /// 0005070 // SH3/SH2 adaptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008269 // JAK pathway signal transduction adaptor activity // inferred from electronic annotation /// 0008269 // JAK pathway signal transduction adaptor activity // not recorded 1368606_at NM_030838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030838.1 /DB_XREF=gi:13540641 /GEN=Slc21a7 /FEA=FLmRNA /CNT=5 /TID=Rn.44481.1 /TIER=FL /STK=4 /UG=Rn.44481 /LL=80900 /DEF=Rattus norvegicus organic anion transporting polypeptide 3 (Slc21a7), mRNA. /PROD=organic anion transporting polypeptide 3 /FL=gb:NM_030838.1 gb:AF041105.1 gb:AF083469.1 NM_030838 solute carrier organic anion transporter family, member 1a5 Slco1a5 80900 NM_030838 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015711 // organic anion transport // inferred from direct assay /// 0015711 // organic anion transport // traceable author statement /// 0015711 // organic anion transport // inferred from expression pattern /// 0015718 // monocarboxylic acid transport // inferred from mutant phenotype /// 0015721 // bile acid and bile salt transport // inferred from direct assay /// 0031100 // organ regeneration // inferred from expression pattern /// 0050892 // intestinal absorption // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0008028 // monocarboxylic acid transmembrane transporter activity // inferred from direct assay /// 0008514 // organic anion transmembrane transporter activity // inferred from direct assay /// 0008514 // organic anion transmembrane transporter activity // traceable author statement /// 0008514 // organic anion transmembrane transporter activity // inferred from expression pattern /// 0015125 // bile acid transmembrane transporter activity // inferred from direct assay /// 0015349 // thyroid hormone transmembrane transporter activity // inferred from direct assay 1368607_at NM_031605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031605.1 /DB_XREF=gi:13928827 /GEN=Cyp4a10 /FEA=FLmRNA /CNT=5 /TID=Rn.10034.1 /TIER=FL /STK=4 /UG=Rn.10034 /LL=50549 /DEF=Rattus norvegicus cytochrome P450, 4a10 (Cyp4a10), mRNA. /PROD=cytochrome P450, 4a10 /FL=gb:M37828.1 gb:NM_031605.1 NM_031605 cytochrome P450, family 4, subfamily a, polypeptide 8 Cyp4a8 266674 NM_031605 0001822 // kidney development // inferred from expression pattern /// 0006631 // fatty acid metabolic process // inferred from direct assay /// 0019369 // arachidonic acid metabolic process // inferred from direct assay /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0048252 // lauric acid metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // traceable author statement /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from direct assay /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1368608_at NM_019303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019303.1 /DB_XREF=gi:9506530 /GEN=Cyp2f1 /FEA=FLmRNA /CNT=5 /TID=Rn.10817.1 /TIER=FL /STK=4 /UG=Rn.10817 /LL=54246 /DEF=Rattus norvegicus Cytochrome P450, subfamily IIF, polypeptide 1 (Cyp2f1), mRNA. /PROD=Cytochrome P450, subfamily IIF, polypeptide 1 /FL=gb:AF017393.1 gb:NM_019303.1 NM_019303 cytochrome P450, family 2, subfamily f, polypeptide 4 Cyp2f4 54246 NM_019303 0009636 // response to toxin // not recorded /// 0018931 // naphthalene metabolic process // inferred from direct assay /// 0018931 // naphthalene metabolic process // not recorded /// 0018979 // trichloroethylene metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from direct assay /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // not recorded /// 0019825 // oxygen binding // inferred from electronic annotation /// 0019825 // oxygen binding // not recorded /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368609_at NM_017047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017047.1 /DB_XREF=gi:8394278 /GEN=Slc10a1 /FEA=FLmRNA /CNT=5 /TID=Rn.9913.1 /TIER=FL /STK=4 /UG=Rn.9913 /LL=24777 /DEF=Rattus norvegicus Solute carrier family 10 (sodiumbile acid cotransporter family), member 1 (Slc10a1), mRNA. /PROD=solute carrier family 10 (sodiumbile acidcotransporter family), member 1 /FL=gb:NM_017047.1 gb:M77479.1 NM_017047 solute carrier family 10 (sodium/bile acid cotransporter family), member 1 Slc10a1 24777 NM_017047 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0015711 // organic anion transport // inferred from electronic annotation /// 0015721 // bile acid and bile salt transport // inferred from direct assay 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay 0008508 // bile acid:sodium symporter activity // inferred from direct assay /// 0008508 // bile acid:sodium symporter activity // not recorded /// 0008508 // bile acid:sodium symporter activity // traceable author statement /// 0008508 // bile acid:sodium symporter activity // inferred from electronic annotation /// 0015125 // bile acid transmembrane transporter activity // inferred from direct assay /// 0015293 // symporter activity // inferred from electronic annotation 1368610_at NM_021585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021585.1 /DB_XREF=gi:11024661 /GEN=Mca32 /FEA=FLmRNA /CNT=5 /TID=Rn.40569.1 /TIER=FL /STK=4 /UG=Rn.40569 /LL=59105 /DEF=Rattus norvegicus surface protein MCA-32 (Mca32), mRNA. /PROD=surface protein MCA-32 /FL=gb:U39546.1 gb:NM_021585.1 NM_021585 mast cell antigen 32 Mca32 59105 NM_021585 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1368611_at NM_133570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133570.1 /DB_XREF=gi:19424255 /GEN=Grp /FEA=FLmRNA /CNT=5 /TID=Rn.10930.1 /TIER=FL /STK=4 /UG=Rn.10930 /DEF=Rattus norvegicus gastrin-releasing peptide (Grp), mRNA. /PROD=gastrin-releasing peptide /FL=gb:M31176.1 gb:NM_133570.1 NM_133570 gastrin releasing peptide Grp 171101 NM_133570 0007218 // neuropeptide signaling pathway // inferred from mutant phenotype /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005184 // neuropeptide hormone activity // inferred from electronic annotation /// 0005184 // neuropeptide hormone activity // not recorded 1368612_at NM_013180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013180.1 /DB_XREF=gi:6981107 /GEN=Itgb4 /FEA=FLmRNA /CNT=4 /TID=Rn.10727.1 /TIER=FL /STK=4 /UG=Rn.10727 /LL=25724 /DEF=Rattus norvegicus Integrin, beta 4 (Itgb4), mRNA. /PROD=integrin, beta 4 /FL=gb:NM_013180.1 gb:U60096.1 NM_013180 integrin, beta 4 Itgb4 25724 NM_013180 0007154 // cell communication // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0007155 // cell adhesion // traceable author statement /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0031581 // hemidesmosome assembly // not recorded /// 0046847 // filopodium assembly // not recorded 0005615 // extracellular space // traceable author statement /// 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005886 // plasma membrane // not recorded /// 0005938 // cell cortex // inferred from direct assay /// 0008305 // integrin complex // inferred from electronic annotation /// 0008305 // integrin complex // not recorded /// 0008305 // integrin complex // traceable author statement /// 0009925 // basal plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0050839 // cell adhesion molecule binding // traceable author statement 1368613_at NM_053730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053730.1 /DB_XREF=gi:16758545 /GEN=Stag3 /FEA=FLmRNA /CNT=4 /TID=Rn.18997.1 /TIER=FL /STK=4 /UG=Rn.18997 /LL=114522 /DEF=Rattus norvegicus stromal antigen 3 (Stag3), mRNA. /PROD=stromal antigen 3 /FL=gb:AY027880.1 gb:NM_053730.1 NM_053730 stromal antigen 3 Stag3 114522 NM_053730 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007126 // meiosis // traceable author statement /// 0007126 // meiosis // inferred from electronic annotation 0000795 // synaptonemal complex // not recorded /// 0000795 // synaptonemal complex // traceable author statement /// 0000795 // synaptonemal complex // inferred from electronic annotation /// 0000802 // transverse filament // inferred from electronic annotation /// 0000802 // transverse filament // not recorded /// 0001673 // male germ cell nucleus // inferred from electronic annotation /// 0001673 // male germ cell nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0030893 // meiotic cohesin complex // inferred from electronic annotation /// 0030893 // meiotic cohesin complex // not recorded 0005488 // binding // inferred from electronic annotation 1368614_at NM_133552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133552.1 /DB_XREF=gi:19424225 /GEN=Wbscr14 /FEA=FLmRNA /CNT=4 /TID=Rn.77647.1 /TIER=FL /STK=4 /UG=Rn.77647 /DEF=Rattus norvegicus Williams-Beuren syndrome chromosome region 14 homolog (human) (Wbscr14), mRNA. /PROD=Williams-Beuren syndrome chromosome region 14homolog (human) /FL=gb:AB074517.1 gb:NM_133552.1 NM_133552 MLX interacting protein-like Mlxipl 171078 NM_133552 0006110 // regulation of glycolysis // inferred from direct assay /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0009749 // response to glucose stimulus // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0071333 // cellular response to glucose stimulus // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from direct assay 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0030528 // transcription regulator activity // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0035538 // carbohydrate response element binding // non-traceable author statement /// 0043565 // sequence-specific DNA binding // inferred from direct assay 1368615_a_at U09838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U09838.1 /DB_XREF=gi:559765 /GEN=rVAChT /FEA=FLmRNA /CNT=1 /TID=Rn.9987.2 /TIER=FL /STK=1 /UG=Rn.9987 /LL=60422 /DEF=Rattus norvegicus vesicular acetylcholine transporter (rVAChT) mRNA, complete cds. /PROD=vesicular acetylcholine transporter /FL=gb:U09838.1 U09838 solute carrier family 18 (vesicular acetylcholine), member 3 Slc18a3 60422 NM_031663 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008021 // synaptic vesicle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030121 // AP-1 adaptor complex // inferred from mutant phenotype /// 0030122 // AP-2 adaptor complex // inferred from mutant phenotype /// 0030424 // axon // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0043195 // terminal button // not recorded /// 0043679 // axon terminus // inferred from direct assay /// 0060201 // clathrin sculpted acetylcholine transport vesicle membrane // not recorded /// 0060201 // clathrin sculpted acetylcholine transport vesicle membrane // inferred from sequence or structural similarity 0005277 // acetylcholine transmembrane transporter activity // inferred from direct assay /// 0005277 // acetylcholine transmembrane transporter activity // inferred from mutant phenotype /// 0005277 // acetylcholine transmembrane transporter activity // not recorded /// 0005277 // acetylcholine transmembrane transporter activity // inferred from sequence or structural similarity /// 0042166 // acetylcholine binding // inferred from mutant phenotype 1368616_at NM_012557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012557.1 /DB_XREF=gi:6978828 /GEN=Fancc /FEA=FLmRNA /CNT=4 /TID=Rn.10798.1 /TIER=FL /STK=4 /UG=Rn.10798 /LL=24361 /DEF=Rattus norvegicus Fanconi anemia group C (Fancc), mRNA. /PROD=fanconi anemia group C /FL=gb:U73586.1 gb:NM_012557.1 NM_012557 Fanconi anemia, complementation group C Fancc 24361 NM_012557 0002262 // myeloid cell homeostasis // inferred from electronic annotation /// 0002262 // myeloid cell homeostasis // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006289 // nucleotide-excision repair // inferred from electronic annotation /// 0006289 // nucleotide-excision repair // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007276 // gamete generation // not recorded /// 0007276 // gamete generation // inferred from electronic annotation /// 0007281 // germ cell development // inferred from electronic annotation /// 0007281 // germ cell development // not recorded /// 0019430 // removal of superoxide radicals // inferred from electronic annotation /// 0019430 // removal of superoxide radicals // not recorded 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368617_at NM_022957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022957.1 /DB_XREF=gi:12621137 /GEN=Pci /FEA=FLmRNA /CNT=4 /TID=Rn.30006.1 /TIER=FL /STK=4 /UG=Rn.30006 /LL=65051 /DEF=Rattus norvegicus protein C inhibitor (Pci), mRNA. /PROD=protein C inhibitor /FL=gb:AB013128.1 gb:NM_022957.1 NM_022957 serine (or cysteine) peptidase inhibitor, clade A, member 5 Serpina5 65051 NM_022957 0007283 // spermatogenesis // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030193 // regulation of blood coagulation // non-traceable author statement /// 0045861 // negative regulation of proteolysis // inferred from direct assay 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from electronic annotation 0002020 // protease binding // not recorded /// 0002020 // protease binding // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from direct assay /// 0004867 // serine-type endopeptidase inhibitor activity // not recorded /// 0004867 // serine-type endopeptidase inhibitor activity // non-traceable author statement /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032190 // acrosin binding // not recorded /// 0032190 // acrosin binding // inferred from electronic annotation 1368618_at NM_031623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031623.1 /DB_XREF=gi:13928857 /GEN=Grb14 /FEA=FLmRNA /CNT=4 /TID=Rn.30028.1 /TIER=FL /STK=4 /UG=Rn.30028 /LL=58844 /DEF=Rattus norvegicus growth factor receptor bound protein 14 (Grb14), mRNA. /PROD=growth factor receptor bound protein 14 /FL=gb:AF076619.1 gb:NM_031623.1 NM_031623 growth factor receptor bound protein 14 Grb14 58844 NM_031623 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0008286 // insulin receptor signaling pathway // inferred from direct assay /// 0023034 // intracellular signaling pathway // inferred from expression pattern /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from direct assay /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005070 // SH3/SH2 adaptor activity // inferred from electronic annotation /// 0005070 // SH3/SH2 adaptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // inferred from physical interaction 1368619_at NM_031630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031630.1 /DB_XREF=gi:13928867 /GEN=Ddx25 /FEA=FLmRNA /CNT=4 /TID=Rn.34746.1 /TIER=FL /STK=4 /UG=Rn.34746 /LL=58856 /DEF=Rattus norvegicus DEAD (aspartate-glutamate-alanine-aspartate) box polypeptide 25 (Ddx25), mRNA. /PROD=DEAD (aspartate-glutamate-alanine-aspartate) boxpolypeptide 25 /FL=gb:AF142629.1 gb:NM_031630.1 NM_031630 DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 Ddx25 58856 NM_031630 0006200 // ATP catabolic process // not recorded /// 0006406 // mRNA export from nucleus // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // not recorded /// 0006406 // mRNA export from nucleus // inferred from sequence or structural similarity /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006417 // regulation of translation // not recorded /// 0006417 // regulation of translation // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007286 // spermatid development // inferred from electronic annotation /// 0007286 // spermatid development // not recorded /// 0007286 // spermatid development // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0033391 // chromatoid body // inferred from electronic annotation /// 0033391 // chromatoid body // not recorded /// 0033391 // chromatoid body // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0003724 // RNA helicase activity // inferred from direct assay /// 0004004 // ATP-dependent RNA helicase activity // inferred from electronic annotation /// 0004004 // ATP-dependent RNA helicase activity // not recorded /// 0004004 // ATP-dependent RNA helicase activity // inferred from sequence or structural similarity /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay 1368620_at NM_031792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031792.1 /DB_XREF=gi:13929121 /GEN=Spag4 /FEA=FLmRNA /CNT=4 /TID=Rn.28620.1 /TIER=FL /STK=4 /UG=Rn.28620 /LL=83623 /DEF=Rattus norvegicus sperm antigen 4 (Spag4), mRNA. /PROD=sperm antigen 4 /FL=gb:NM_031792.1 gb:AF043345.2 NM_031792 sperm associated antigen 4 Spag4 83623 NM_031792 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005929 // cilium // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019861 // flagellum // inferred from electronic annotation /// 0035086 // flagellar axoneme // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from direct assay 1368621_at NM_022960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022960.1 /DB_XREF=gi:12621143 /GEN=Aqp9 /FEA=FLmRNA /CNT=4 /TID=Rn.30018.1 /TIER=FL /STK=4 /UG=Rn.30018 /LL=65054 /DEF=Rattus norvegicus neutral solute channel aquaporin 9 (Aqp9), mRNA. /PROD=neutral solute channel aquaporin 9 /FL=gb:AF016406.1 gb:NM_022960.1 NM_022960 aquaporin 9 Aqp9 65054 NM_022960 0006810 // transport // inferred from electronic annotation /// 0006833 // water transport // inferred from direct assay /// 0006833 // water transport // not recorded /// 0006833 // water transport // inferred from electronic annotation /// 0006863 // purine transport // not recorded /// 0006863 // purine transport // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010033 // response to organic substance // not recorded /// 0015722 // canalicular bile acid transport // inferred from direct assay /// 0015791 // polyol transport // inferred from electronic annotation /// 0015791 // polyol transport // not recorded /// 0015837 // amine transport // inferred from electronic annotation /// 0015837 // amine transport // not recorded /// 0015855 // pyrimidine transport // not recorded /// 0015855 // pyrimidine transport // inferred from electronic annotation /// 0046689 // response to mercury ion // inferred from electronic annotation /// 0046689 // response to mercury ion // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0071320 // cellular response to cAMP // inferred from electronic annotation /// 0071320 // cellular response to cAMP // not recorded 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005215 // transporter activity // inferred from electronic annotation /// 0005345 // purine transmembrane transporter activity // inferred from electronic annotation /// 0005345 // purine transmembrane transporter activity // not recorded /// 0005350 // pyrimidine transmembrane transporter activity // inferred from electronic annotation /// 0005350 // pyrimidine transmembrane transporter activity // not recorded /// 0015250 // water channel activity // inferred from direct assay /// 0015250 // water channel activity // not recorded /// 0015250 // water channel activity // inferred from electronic annotation 1368622_at NM_053716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053716.1 /DB_XREF=gi:16758953 /GEN=Fbp2 /FEA=FLmRNA /CNT=4 /TID=Rn.15319.1 /TIER=FL /STK=4 /UG=Rn.15319 /LL=114508 /DEF=Rattus norvegicus fructose bisphosphatase 2 (Fbp2), mRNA. /PROD=fructose bisphosphatase 2 /FL=gb:NM_053716.1 NM_053716 fructose-1,6-bisphosphatase 2 Fbp2 114508 NM_053716 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006094 // gluconeogenesis // inferred from direct assay /// 0006094 // gluconeogenesis // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation /// 0042132 // fructose 1,6-bisphosphate 1-phosphatase activity // inferred from direct assay /// 0042132 // fructose 1,6-bisphosphate 1-phosphatase activity // inferred from electronic annotation /// 0042578 // phosphoric ester hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368623_at NM_053919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053919.1 /DB_XREF=gi:16758797 /GEN=Ceacam9 /FEA=FLmRNA /CNT=4 /TID=Rn.81017.1 /TIER=FL /STK=4 /UG=Rn.81017 /LL=116711 /DEF=Rattus norvegicus CEA-related cell adhesion molecule 9 (Ceacam9), mRNA. /PROD=CEA-related cell adhesion molecule 9 /FL=gb:NM_053919.1 gb:AF172446.1 NM_053919 carcinoembryonic antigen-related cell adhesion molecule 9 Ceacam9 116711 NM_053919 1368624_at NM_052979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_052979.1 /DB_XREF=gi:16418472 /GEN=A /FEA=FLmRNA /CNT=4 /TID=Rn.43882.1 /TIER=FL /STK=4 /UG=Rn.43882 /LL=24152 /DEF=Rattus norvegicus Agouti (coat color) (A), mRNA. /PROD=agouti (coat color) /FL=gb:NM_052979.1 gb:AB045587.1 NM_052979 agouti signaling protein Asip 24152 NM_052979 0006091 // generation of precursor metabolites and energy // inferred from electronic annotation /// 0006091 // generation of precursor metabolites and energy // not recorded /// 0008343 // adult feeding behavior // inferred from electronic annotation /// 0008343 // adult feeding behavior // not recorded /// 0009755 // hormone-mediated signaling pathway // inferred from electronic annotation /// 0032402 // melanosome transport // inferred from electronic annotation /// 0032402 // melanosome transport // not recorded /// 0032438 // melanosome organization // inferred from electronic annotation /// 0032438 // melanosome organization // not recorded /// 0040030 // regulation of molecular function, epigenetic // not recorded /// 0042438 // melanin biosynthetic process // inferred from electronic annotation /// 0042438 // melanin biosynthetic process // not recorded /// 0043473 // pigmentation // inferred from electronic annotation /// 0043473 // pigmentation // not recorded /// 0071514 // genetic imprinting // not recorded 0005576 // extracellular region // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0031779 // melanocortin receptor binding // not recorded /// 0031779 // melanocortin receptor binding // inferred from electronic annotation /// 0031781 // type 3 melanocortin receptor binding // inferred from electronic annotation /// 0031781 // type 3 melanocortin receptor binding // not recorded /// 0031782 // type 4 melanocortin receptor binding // inferred from electronic annotation /// 0031782 // type 4 melanocortin receptor binding // not recorded 1368625_at NM_031669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031669.1 /DB_XREF=gi:14389306 /GEN=Upa /FEA=FLmRNA /CNT=4 /TID=Rn.43329.1 /TIER=FL /STK=4 /UG=Rn.43329 /LL=60574 /DEF=Rattus norvegicus uterine-specific proline-rich acidic protein (Upa), mRNA. /PROD=uterine-specific proline-rich acidic protein /FL=gb:AF214733.1 gb:NM_031669.1 NM_031669 proline-rich acidic protein 1 Prap1 60574 NM_031669 0005576 // extracellular region // inferred from electronic annotation 1368626_at NM_019315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019315.1 /DB_XREF=gi:9506834 /GEN=Kcnn3 /FEA=FLmRNA /CNT=6 /TID=Rn.10840.1 /TIER=FL /STK=4 /UG=Rn.10840 /LL=54263 /DEF=Rattus norvegicus potassium intermediatesmall conductance calcium-activated channel, subfamily N, member 3 (Kcnn3), mRNA. /PROD=potassium intermediatesmall conductancecalcium-activated channel, subfamily N, member 3 /FL=gb:AF292389.1 gb:U69884.1 gb:NM_019315.1 gb:AF284345.1 NM_019315 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 Kcnn3 54263 NM_019315 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from mutant phenotype /// 0006813 // potassium ion transport // traceable author statement /// 0006813 // potassium ion transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0015269 // calcium-activated potassium channel activity // inferred from mutant phenotype /// 0015269 // calcium-activated potassium channel activity // inferred from electronic annotation /// 0016286 // small conductance calcium-activated potassium channel activity // inferred from mutant phenotype /// 0016286 // small conductance calcium-activated potassium channel activity // inferred from electronic annotation /// 0042802 // identical protein binding // traceable author statement 1368627_at NM_031546 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031546.1 /DB_XREF=gi:13928739 /GEN=Rgn /FEA=FLmRNA /CNT=6 /TID=Rn.10006.1 /TIER=FL /STK=4 /UG=Rn.10006 /LL=25106 /DEF=Rattus norvegicus Regucalcin (Rgn), mRNA. /PROD=regucalcin /FL=gb:NM_031546.1 gb:D38467.1 gb:AB037934.1 NM_031546 regucalcin (senescence marker protein-30) Rgn 25106 NM_031546 0006874 // cellular calcium ion homeostasis // inferred from direct assay /// 0032781 // positive regulation of ATPase activity // inferred from direct assay /// 0050848 // regulation of calcium-mediated signaling // inferred from direct assay 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0030234 // enzyme regulator activity // inferred from electronic annotation 1368628_at NM_012677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012677.1 /DB_XREF=gi:6981669 /GEN=Ton /FEA=FLmRNA /CNT=5 /TID=Rn.9882.1 /TIER=FL /STK=4 /UG=Rn.9882 /LL=24841 /DEF=Rattus norvegicus Tonin (Ton), mRNA. /PROD=tonin /FL=gb:M11565.1 gb:NM_012677.1 NM_012677 tonin Ton 24841 NM_012677 0006508 // proteolysis // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from direct assay /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368629_at NM_012641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012641.1 /DB_XREF=gi:6981469 /GEN=Reg1 /FEA=FLmRNA /CNT=5 /TID=Rn.11332.1 /TIER=FL /STK=4 /UG=Rn.11332 /LL=24714 /DEF=Rattus norvegicus Regeneration protein, lithostatin, pancreatic stone protein (Reg1), mRNA. /PROD=regeneration protein, lithostatin, pancreaticstone protein /FL=gb:NM_012641.1 gb:M62930.1 gb:M18962.1 NM_012641 regenerating islet-derived 1 alpha Reg1a 24714 NM_012641 0005576 // extracellular region // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // not recorded 1368630_at NM_022854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022854.1 /DB_XREF=gi:12408303 /GEN=Tlbp /FEA=FLmRNA /CNT=5 /TID=Rn.10078.1 /TIER=FL /STK=4 /UG=Rn.10078 /LL=64822 /DEF=Rattus norvegicus testis lipid binding protein (Tlbp), mRNA. /PROD=testis lipid binding protein /FL=gb:NM_022854.1 gb:U07870.1 NM_022854 fatty acid binding protein 9, testis Fabp9 64822 NM_022854 0001675 // acrosome assembly // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation 0001669 // acrosomal vesicle // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation 1368631_at NM_021596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021596.1 /DB_XREF=gi:11024677 /GEN=Dbil5 /FEA=FLmRNA /CNT=5 /TID=Rn.35510.1 /TIER=FL /STK=4 /UG=Rn.35510 /LL=59116 /DEF=Rattus norvegicus diazepam binding inhibitor-like 5 (Dbil5), mRNA. /PROD=endozepine-like peptide /FL=gb:AF128531.1 gb:NM_021596.1 NM_021596 diazepam binding inhibitor-like 5 Dbil5 59116 NM_021596 0006637 // acyl-CoA metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation 0000062 // acyl-CoA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation 1368632_at NM_012560 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012560.1 /DB_XREF=gi:6978844 /GEN=Fkhr /FEA=FLmRNA /CNT=5 /TID=Rn.9864.1 /TIER=FL /STK=4 /UG=Rn.9864 /LL=24370 /DEF=Rattus norvegicus Forkhead-like transcription factor BF-1 (Fkhr), mRNA. /PROD=forkhead-like transcription factor BF-1 /FL=gb:M87634.1 gb:NM_012560.1 NM_012560 forkhead box G1 Foxg1 24370 NM_012560 0002052 // positive regulation of neuroblast proliferation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007346 // regulation of mitotic cell cycle // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0016199 // axon midline choice point recognition // not recorded /// 0021954 // central nervous system neuron development // not recorded /// 0030900 // forebrain development // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045787 // positive regulation of cell cycle // not recorded /// 0048667 // cell morphogenesis involved in neuron differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1368633_at NM_022859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022859.1 /DB_XREF=gi:12408313 /GEN=Aeg /FEA=FLmRNA /CNT=5 /TID=Rn.10102.1 /TIER=FL /STK=4 /UG=Rn.10102 /LL=64827 /DEF=Rattus norvegicus epididymal glycoprotein (Aeg), mRNA. /PROD=epididymal glycoprotein /FL=gb:NM_022859.1 gb:M31173.1 NM_022859 cysteine-rich secretory protein 1 Crisp1 64827 NM_022859 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0042581 // specific granule // not recorded 1368634_at NM_017108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017108.1 /DB_XREF=gi:8659556 /GEN=Kcnh3 /FEA=FLmRNA /CNT=4 /TID=Rn.30034.1 /TIER=FL /STK=4 /UG=Rn.30034 /LL=27150 /DEF=Rattus norvegicus potassium voltage-gated channel, subfamily H (eag-related), member 3 (Kcnh3), mRNA. /PROD=potassium voltage-gated channel, subfamily H(eag-related), member 3 /FL=gb:AB022697.1 gb:NM_017108.1 NM_017108 potassium voltage-gated channel, subfamily H (eag-related), member 3 Kcnh3 27150 NM_017108 0000160 // two-component signal transduction system (phosphorelay) // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000155 // two-component sensor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation 1368635_at NM_019135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019135.1 /DB_XREF=gi:9507192 /GEN=Tnfrsf8 /FEA=FLmRNA /CNT=4 /TID=Rn.11322.1 /TIER=FL /STK=4 /UG=Rn.11322 /LL=25069 /DEF=Rattus norvegicus Tumor necrosis factor superfamily, member CD30 (Tnfrsf8), mRNA. /PROD=tumor necrosis factor superfamily, member CD30 /FL=gb:D42117.1 gb:NM_019135.1 NM_019135 tumor necrosis factor receptor superfamily, member 8 Tnfrsf8 25069 NM_019135 0007165 // signal transduction // inferred from electronic annotation /// 0042535 // positive regulation of tumor necrosis factor biosynthetic process // inferred from electronic annotation /// 0042535 // positive regulation of tumor necrosis factor biosynthetic process // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0045556 // positive regulation of TRAIL biosynthetic process // inferred from electronic annotation /// 0045556 // positive regulation of TRAIL biosynthetic process // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368636_at NM_053763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053763.1 /DB_XREF=gi:16758597 /GEN=Cyp27b1 /FEA=FLmRNA /CNT=4 /TID=Rn.10847.1 /TIER=FL /STK=4 /UG=Rn.10847 /LL=114700 /DEF=Rattus norvegicus cytochrome P450, 40 (25-hydroxyvitamin D3 1 alpha-hydroxylase) (Cyp27b1), mRNA. /PROD=cytochrome P450, 40 (25-hydroxyvitamin D3 1alpha-hydroxylase) /FL=gb:AB001992.1 gb:AF000139.1 gb:NM_053763.1 NM_053763 cytochrome P450, family 27, subfamily b, polypeptide 1 Cyp27b1 114700 NM_053763 0006816 // calcium ion transport // not recorded /// 0007568 // aging // inferred from direct assay /// 0007595 // lactation // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010956 // negative regulation of calcidiol 1-monooxygenase activity // not recorded /// 0010980 // positive regulation of vitamin D 24-hydroxylase activity // not recorded /// 0030282 // bone mineralization // not recorded /// 0030308 // negative regulation of cell growth // not recorded /// 0030500 // regulation of bone mineralization // not recorded /// 0032496 // response to lipopolysaccharide // not recorded /// 0032868 // response to insulin stimulus // inferred from direct assay /// 0033280 // response to vitamin D // inferred from direct assay /// 0033280 // response to vitamin D // not recorded /// 0034341 // response to interferon-gamma // not recorded /// 0034612 // response to tumor necrosis factor // not recorded /// 0034695 // response to prostaglandin E stimulus // inferred from direct assay /// 0042359 // vitamin D metabolic process // inferred from direct assay /// 0042359 // vitamin D metabolic process // not recorded /// 0042359 // vitamin D metabolic process // traceable author statement /// 0042368 // vitamin D biosynthetic process // not recorded /// 0042369 // vitamin D catabolic process // inferred from direct assay /// 0042369 // vitamin D catabolic process // not recorded /// 0042493 // response to drug // inferred from direct assay /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0043627 // response to estrogen stimulus // not recorded /// 0045618 // positive regulation of keratinocyte differentiation // not recorded /// 0046688 // response to copper ion // inferred from direct assay /// 0046697 // decidualization // not recorded /// 0051591 // response to cAMP // inferred from direct assay /// 0051592 // response to calcium ion // inferred from expression pattern /// 0055074 // calcium ion homeostasis // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0070314 // G1 to G0 transition // not recorded /// 0070564 // positive regulation of vitamin D receptor signaling pathway // not recorded 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004498 // calcidiol 1-monooxygenase activity // inferred from direct assay /// 0004498 // calcidiol 1-monooxygenase activity // not recorded /// 0004498 // calcidiol 1-monooxygenase activity // traceable author statement /// 0004498 // calcidiol 1-monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368637_at NM_022303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022303.1 /DB_XREF=gi:11560138 /GEN=LOC64171 /FEA=FLmRNA /CNT=4 /TID=Rn.64486.1 /TIER=FL /STK=4 /UG=Rn.64486 /LL=64171 /DEF=Rattus norvegicus caspase recruitment domain protein 9 (LOC64171), mRNA. /PROD=caspase recruitment domain protein 9 /FL=gb:AF311288.1 gb:NM_022303.1 NM_022303 caspase recruitment domain family, member 9 Card9 64171 NM_022303 0007249 // I-kappaB kinase/NF-kappaB cascade // inferred from mutant phenotype /// 0009620 // response to fungus // not recorded /// 0032494 // response to peptidoglycan // not recorded /// 0032495 // response to muramyl dipeptide // not recorded /// 0032755 // positive regulation of interleukin-6 production // not recorded /// 0032760 // positive regulation of tumor necrosis factor production // not recorded /// 0032874 // positive regulation of stress-activated MAPK cascade // not recorded /// 0042493 // response to drug // not recorded /// 0042534 // regulation of tumor necrosis factor biosynthetic process // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043330 // response to exogenous dsRNA // not recorded /// 0045076 // regulation of interleukin-2 biosynthetic process // not recorded /// 0045089 // positive regulation of innate immune response // not recorded /// 0045408 // regulation of interleukin-6 biosynthetic process // not recorded /// 0046330 // positive regulation of JNK cascade // not recorded /// 0050830 // defense response to Gram-positive bacterium // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051607 // defense response to virus // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019904 // protein domain specific binding // inferred from mutant phenotype /// 0042803 // protein homodimerization activity // not recorded /// 0050700 // CARD domain binding // not recorded 1368638_at NM_022291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022291.1 /DB_XREF=gi:11560124 /GEN=OT7T022 /FEA=FLmRNA /CNT=4 /TID=Rn.64483.1 /TIER=FL /STK=4 /UG=Rn.64483 /LL=64107 /DEF=Rattus norvegicus RFamide-related peptide receptor (OT7T022), mRNA. /PROD=RFamide-related peptide receptor /FL=gb:AB040103.1 gb:AF330056.1 gb:NM_022291.1 gb:AF268901.1 NM_022291 neuropeptide FF receptor 1 Npffr1 64107 NM_022291 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0008188 // neuropeptide receptor activity // inferred from electronic annotation 1368639_at NM_020095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020095.1 /DB_XREF=gi:13489088 /GEN=Kcnip2 /FEA=FLmRNA /CNT=4 /TID=Rn.54048.1 /TIER=FL /STK=4 /UG=Rn.54048 /LL=56817 /DEF=Rattus norvegicus potassium channel modulatory protein 2 (Kcnip2), mRNA. /PROD=A-type potassium channel modulatory protein 2b /FL=gb:AB040031.1 gb:NM_020095.1 gb:AB040032.1 gb:NM_020094.1 NM_020095 A-type potassium channel modulatory protein 2 Kchip2 619380 NM_001034005 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 1368640_at NM_134384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134384.1 /DB_XREF=gi:19705494 /GEN=spergen-1 /FEA=FLmRNA /CNT=4 /TID=Rn.51863.1 /TIER=FL /STK=4 /UG=Rn.51863 /DEF=Rattus norvegicus spermatogenic specific-gene1 (spergen-1), mRNA. /PROD=spermatogenic specific-gene1 /FL=gb:NM_134384.1 gb:AB057408.1 NM_134384 spermatogenesis associated 19 Spata19 171403 NM_134384 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1368641_at NM_053402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053402.1 /DB_XREF=gi:16758129 /GEN=Wnt4 /FEA=FLmRNA /CNT=26 /TID=Rn.34782.1 /TIER=FL /STK=3 /UG=Rn.34782 /LL=84426 /DEF=Rattus norvegicus wingless-type MMTV integration site family, member 4 (Wnt4), mRNA. /PROD=wingless-type MMTV integration site family,member 4 /FL=gb:NM_053402.1 gb:AF188608.1 NM_053402 wingless-type MMTV integration site family, member 4 Wnt4 84426 NM_053402 0001656 // metanephros development // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001822 // kidney development // not recorded /// 0001837 // epithelial to mesenchymal transition // not recorded /// 0001838 // embryonic epithelial tube formation // inferred from electronic annotation /// 0001838 // embryonic epithelial tube formation // not recorded /// 0001889 // liver development // not recorded /// 0006702 // androgen biosynthetic process // not recorded /// 0007223 // Wnt receptor signaling pathway, calcium modulating pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007276 // gamete generation // inferred from electronic annotation /// 0007276 // gamete generation // not recorded /// 0007548 // sex differentiation // inferred from electronic annotation /// 0007548 // sex differentiation // not recorded /// 0008584 // male gonad development // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0008585 // female gonad development // inferred from electronic annotation /// 0008585 // female gonad development // not recorded /// 0010629 // negative regulation of gene expression // not recorded /// 0010893 // positive regulation of steroid biosynthetic process // not recorded /// 0010894 // negative regulation of steroid biosynthetic process // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0018345 // protein palmitoylation // not recorded /// 0022407 // regulation of cell-cell adhesion // inferred from electronic annotation /// 0022407 // regulation of cell-cell adhesion // not recorded /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030237 // female sex determination // not recorded /// 0030325 // adrenal gland development // not recorded /// 0030501 // positive regulation of bone mineralization // not recorded /// 0032349 // positive regulation of aldosterone biosynthetic process // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032967 // positive regulation of collagen biosynthetic process // not recorded /// 0033077 // T cell differentiation in thymus // not recorded /// 0033080 // immature T cell proliferation in thymus // not recorded /// 0035239 // tube morphogenesis // inferred from electronic annotation /// 0035239 // tube morphogenesis // not recorded /// 0035567 // non-canonical Wnt receptor signaling pathway // not recorded /// 0040037 // negative regulation of fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0040037 // negative regulation of fibroblast growth factor receptor signaling pathway // not recorded /// 0042445 // hormone metabolic process // inferred from electronic annotation /// 0042445 // hormone metabolic process // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045165 // cell fate commitment // not recorded /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045836 // positive regulation of meiosis // inferred from electronic annotation /// 0045836 // positive regulation of meiosis // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0048599 // oocyte development // inferred from electronic annotation /// 0048599 // oocyte development // not recorded /// 0048754 // branching morphogenesis of a tube // not recorded /// 0048856 // anatomical structure development // inferred from electronic annotation /// 0048856 // anatomical structure development // not recorded /// 0051145 // smooth muscle cell differentiation // inferred from electronic annotation /// 0051145 // smooth muscle cell differentiation // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060126 // somatotropin secreting cell differentiation // inferred from electronic annotation /// 0060126 // somatotropin secreting cell differentiation // not recorded /// 0060129 // thyroid-stimulating hormone-secreting cell differentiation // inferred from electronic annotation /// 0060129 // thyroid-stimulating hormone-secreting cell differentiation // not recorded /// 0060231 // mesenchymal to epithelial transition // inferred from electronic annotation /// 0060231 // mesenchymal to epithelial transition // not recorded /// 0060748 // tertiary branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060748 // tertiary branching involved in mammary gland duct morphogenesis // not recorded /// 0061054 // dermatome development // not recorded /// 0061180 // mammary gland epithelium development // not recorded /// 0061205 // paramesonephric duct development // not recorded /// 0071392 // cellular response to estradiol stimulus // inferred from expression pattern /// 0071464 // cellular response to hydrostatic pressure // inferred from expression pattern /// 0071560 // cellular response to transforming growth factor beta stimulus // not recorded /// 0072033 // renal vesicle formation // not recorded /// 0072034 // renal vesicle induction // inferred from electronic annotation /// 0072034 // renal vesicle induction // not recorded /// 0072164 // mesonephric tubule development // not recorded /// 0072273 // metanephric nephron morphogenesis // not recorded /// 0090002 // establishment of protein localization in plasma membrane // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0031012 // extracellular matrix // not recorded 0003714 // transcription corepressor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded 1368642_at NM_031333 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031333.1 /DB_XREF=gi:13786161 /GEN=Cdh2 /FEA=FLmRNA /CNT=23 /TID=Rn.17239.1 /TIER=FL /STK=3 /UG=Rn.17239 /LL=83501 /DEF=Rattus norvegicus cadherin 2, type 1, N-cadherin (neuronal) (Cdh2), mRNA. /PROD=cadherin 2, type 1, N-cadherin (neuronal) /FL=gb:AB017695.1 gb:NM_031333.1 gb:AF097593.1 NM_031333 cadherin 2 Cdh2 83501 NM_031333 0007155 // cell adhesion // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // not recorded /// 0007157 // heterophilic cell-cell adhesion // inferred from electronic annotation /// 0007157 // heterophilic cell-cell adhesion // not recorded /// 0007416 // synapse assembly // inferred from mutant phenotype /// 0016337 // cell-cell adhesion // inferred from direct assay /// 0016339 // calcium-dependent cell-cell adhesion // inferred from mutant phenotype /// 0016339 // calcium-dependent cell-cell adhesion // not recorded /// 0016339 // calcium-dependent cell-cell adhesion // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0031641 // regulation of myelination // inferred from mutant phenotype /// 0032880 // regulation of protein localization // inferred from mutant phenotype /// 0035023 // regulation of Rho protein signal transduction // inferred from mutant phenotype /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // not recorded /// 0050770 // regulation of axonogenesis // inferred from mutant phenotype /// 0051291 // protein heterooligomerization // inferred from physical interaction 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0005913 // cell-cell adherens junction // not recorded /// 0005916 // fascia adherens // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016342 // catenin complex // inferred from electronic annotation /// 0016342 // catenin complex // not recorded /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0044456 // synapse part // inferred from direct assay /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // not recorded /// 0045202 // synapse // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction /// 0042153 // RPTP-like protein binding // inferred from electronic annotation /// 0042153 // RPTP-like protein binding // not recorded /// 0045294 // alpha-catenin binding // inferred from electronic annotation /// 0045294 // alpha-catenin binding // not recorded /// 0045295 // gamma-catenin binding // inferred from electronic annotation /// 0045295 // gamma-catenin binding // not recorded 1368643_at NM_134392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134392.1 /DB_XREF=gi:19705506 /GEN=HASH /FEA=FLmRNA /CNT=16 /TID=Rn.8467.1 /TIER=FL /STK=3 /UG=Rn.8467 /LL=171413 /DEF=Rattus norvegicus kinesin-related protein HASH (HASH), mRNA. /PROD=kinesin-related protein HASH /FL=gb:AB046606.1 gb:AF291466.1 gb:NM_134392.1 NM_134392 spermatogenesis associated 6 Spata6 171413 NM_134392 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 1368644_at AI233848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233848 /DB_XREF=gi:3817728 /DB_XREF=EST230536 /CLONE=RLUCR91 /FEA=FLmRNA /CNT=16 /TID=Rn.8467.1 /TIER=Stack /STK=10 /UG=Rn.8467 /LL=171413 /UG_GENE=HASH /UG_TITLE=kinesin-related protein HASH /FL=gb:AB046606.1 gb:AF291466.1 gb:NM_134392.1 AI233848 spermatogenesis associated 6 Spata6 171413 NM_134392 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 1368645_at NM_012637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012637.1 /DB_XREF=gi:6981441 /GEN=Ptpn1 /FEA=FLmRNA /CNT=15 /TID=Rn.11317.1 /TIER=FL /STK=3 /UG=Rn.11317 /LL=24697 /DEF=Rattus norvegicus protein tyrosine phosphatase, non-receptor type 1 (Ptpn1), mRNA. /PROD=protein-tyrosine phosphatase /FL=gb:M33962.1 gb:NM_012637.1 NM_012637 protein tyrosine phosphatase, non-receptor type 1 Ptpn1 24697 NM_012637 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // inferred from mutant phenotype /// 0006470 // protein dephosphorylation // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // not recorded /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0046626 // regulation of insulin receptor signaling pathway // inferred from mutant phenotype 0005626 // insoluble fraction // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // non-traceable author statement /// 0031410 // cytoplasmic vesicle // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from mutant phenotype /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005158 // insulin receptor binding // inferred from direct assay /// 0005158 // insulin receptor binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1368646_at NM_017322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017322.1 /DB_XREF=gi:8394232 /GEN=SAPK /FEA=FLmRNA /CNT=15 /TID=Rn.9910.1 /TIER=FL /STK=3 /UG=Rn.9910 /LL=50658 /DEF=Rattus norvegicus stress activated protein kinase alpha II (SAPK), mRNA. /PROD=stress activated protein kinase alpha II /FL=gb:L27112.1 gb:L27111.1 gb:NM_017322.1 NM_017322 mitogen-activated protein kinase 9 Mapk9 50658 NM_017322 0001836 // release of cytochrome c from mitochondria // inferred from mutant phenotype /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006626 // protein targeting to mitochondrion // inferred from expression pattern /// 0007254 // JNK cascade // inferred from direct assay /// 0007254 // JNK cascade // not recorded /// 0007258 // JUN phosphorylation // inferred from mutant phenotype /// 0007417 // central nervous system development // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009636 // response to toxin // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0010628 // positive regulation of gene expression // not recorded /// 0010744 // positive regulation of macrophage derived foam cell differentiation // not recorded /// 0010770 // positive regulation of cell morphogenesis involved in differentiation // inferred from mutant phenotype /// 0014075 // response to amine stimulus // inferred from expression pattern /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0031394 // positive regulation of prostaglandin biosynthetic process // inferred from mutant phenotype /// 0031396 // regulation of protein ubiquitination // inferred from mutant phenotype /// 0031558 // induction of apoptosis in response to chemical stimulus // not recorded /// 0032308 // positive regulation of prostaglandin secretion // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032722 // positive regulation of chemokine production // inferred from mutant phenotype /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0034644 // cellular response to UV // inferred from mutant phenotype /// 0042493 // response to drug // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043280 // positive regulation of caspase activity // inferred from mutant phenotype /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from mutant phenotype /// 0045941 // positive regulation of transcription // inferred from mutant phenotype /// 0046328 // regulation of JNK cascade // inferred from mutant phenotype /// 0046686 // response to cadmium ion // not recorded /// 0051773 // positive regulation of nitric-oxide synthase 2 biosynthetic process // inferred from mutant phenotype /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0044445 // cytosolic part // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004705 // JUN kinase activity // inferred from direct assay /// 0004705 // JUN kinase activity // inferred from mutant phenotype /// 0004705 // JUN kinase activity // not recorded /// 0004707 // MAP kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008656 // caspase activator activity // inferred from mutant phenotype /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from physical interaction 1368647_at NM_031657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031657.1 /DB_XREF=gi:13928909 /GEN=Gprk6 /FEA=FLmRNA /CNT=14 /TID=Rn.10633.1 /TIER=FL /STK=3 /UG=Rn.10633 /LL=59076 /DEF=Rattus norvegicus G protein-coupled receptor kinase 6 (Gprk6), mRNA. /PROD=G protein-coupled receptor kinase 6 /FL=gb:NM_031657.1 NM_031657 G protein-coupled receptor kinase 6 Grk6 59076 NM_001112712 /// NM_001112713 /// NM_031657 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004703 // G-protein coupled receptor kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368648_at NM_053472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053472.1 /DB_XREF=gi:16758221 /GEN=Cox4b /FEA=FLmRNA /CNT=12 /TID=Rn.7214.1 /TIER=FL /STK=3 /UG=Rn.7214 /LL=84683 /DEF=Rattus norvegicus cytochrome c oxidase, subunit IVb (Cox4b), mRNA. /PROD=cytochrome c oxidase subunit IV isoform 2precursor /FL=gb:NM_053472.1 gb:AF255347.1 NM_053472 cytochrome c oxidase subunit IV isoform 2 Cox4i2 84683 NM_053472 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005751 // mitochondrial respiratory chain complex IV // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // not recorded /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // not recorded /// 0004129 // cytochrome-c oxidase activity // traceable author statement /// 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation 1368649_at NM_133419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133419.1 /DB_XREF=gi:19173789 /GEN=Dkc1 /FEA=FLmRNA /CNT=17 /TID=Rn.4223.1 /TIER=FL /STK=3 /UG=Rn.4223 /LL=170944 /DEF=Rattus norvegicus dyskeratosis congenita 1, dyskerin (Dkc1), mRNA. /PROD=dyskeratosis congenita 1, dyskerin /FL=gb:NM_133419.1 NM_133419 dyskeratosis congenita 1, dyskerin Dkc1 170944 NM_133419 0001522 // pseudouridine synthesis // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from direct assay /// 0009451 // RNA modification // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0005732 // small nucleolar ribonucleoprotein complex // inferred from direct assay /// 0015030 // Cajal body // inferred from direct assay /// 0015030 // Cajal body // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0009982 // pseudouridine synthase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1368650_at NM_031135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031135.1 /DB_XREF=gi:13592116 /GEN=Tieg /FEA=FLmRNA /CNT=16 /TID=Rn.2398.1 /TIER=FL /STK=3 /UG=Rn.2398 /LL=81813 /DEF=Rattus norvegicus TGFB inducible early growth response (Tieg), mRNA. /PROD=TGFB inducible early growth response /FL=gb:U88630.1 gb:U78875.1 gb:NM_031135.1 NM_031135 Kruppel-like factor 10 Klf10 81813 NM_031135 0006350 // transcription // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from direct assay /// 0030282 // bone mineralization // inferred from electronic annotation /// 0030282 // bone mineralization // not recorded /// 0042127 // regulation of cell proliferation // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045672 // positive regulation of osteoclast differentiation // inferred from electronic annotation /// 0045672 // positive regulation of osteoclast differentiation // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368651_at M17685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M17685.1 /DB_XREF=gi:206201 /FEA=FLmRNA /CNT=14 /TID=Rn.48821.1 /TIER=FL /STK=1 /UG=Rn.48821 /LL=24651 /UG_GENE=Pklr /UG_TITLE=Pyruvate kinase, liver and RBC /DEF=Rat L-type pyruvate kinase mRNA, complete cds. /FL=gb:M11709.1 gb:NM_012624.1 gb:M17685.1 M17685 pyruvate kinase, liver and RBC Pklr 24651 NM_012624 0001666 // response to hypoxia // inferred from expression pattern /// 0005975 // carbohydrate metabolic process // inferred from direct assay /// 0006096 // glycolysis // inferred from direct assay /// 0006096 // glycolysis // inferred from electronic annotation /// 0006754 // ATP biosynthetic process // inferred from direct assay /// 0007584 // response to nutrient // inferred from expression pattern /// 0009408 // response to heat // inferred from direct assay /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010038 // response to metal ion // inferred from expression pattern /// 0010226 // response to lithium ion // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016310 // phosphorylation // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from direct assay /// 0033198 // response to ATP // inferred from direct assay /// 0042866 // pyruvate biosynthetic process // inferred from direct assay /// 0051591 // response to cAMP // inferred from direct assay /// 0051707 // response to other organism // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004743 // pyruvate kinase activity // inferred from direct assay /// 0004743 // pyruvate kinase activity // not recorded /// 0004743 // pyruvate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030955 // potassium ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368652_at AF262319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF262319.1 /DB_XREF=gi:9181862 /FEA=FLmRNA /CNT=12 /TID=Rn.32199.1 /TIER=FL /STK=3 /UG=Rn.32199 /LL=58918 /UG_GENE=Casp9 /DEF=Rattus norvegicus caspase-9 mRNA, complete cds. /PROD=caspase-9 /FL=gb:NM_031632.1 gb:AY027667.1 gb:AF271996.1 gb:AF308469.1 gb:AF286006.1 gb:AF262319.1 AF262319 caspase 9, apoptosis-related cysteine peptidase Casp9 58918 NM_031632 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from mutant phenotype /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // traceable author statement /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from mutant phenotype /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0009411 // response to UV // inferred from electronic annotation /// 0009411 // response to UV // not recorded /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0032025 // response to cobalt ion // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0034349 // glial cell apoptosis // inferred from expression pattern /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043525 // positive regulation of neuron apoptosis // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptosis // not recorded /// 0046677 // response to antibiotic // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008234 // cysteine-type peptidase activity // inferred from direct assay /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay 1368653_a_at BI281756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281756 /DB_XREF=gi:14931842 /DB_XREF=UI-R-CU0s-cbs-c-02-0-UI.s1 /CLONE=UI-R-CU0s-cbs-c-02-0-UI /FEA=EST /CNT=25 /TID=Rn.30105.3 /TIER=Stack /STK=21 /UG=Rn.30105 /LL=117287 /UG_GENE=SP22 /UG_TITLE=fertility protein SP22 BI281756 Parkinson disease (autosomal recessive, early onset) 7 Park7 117287 NM_057143 0001963 // synaptic transmission, dopaminergic // not recorded /// 0001963 // synaptic transmission, dopaminergic // inferred from electronic annotation /// 0006950 // response to stress // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from mutant phenotype /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0032091 // negative regulation of protein binding // inferred from electronic annotation /// 0032091 // negative regulation of protein binding // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // not recorded /// 0042743 // hydrogen peroxide metabolic process // inferred from electronic annotation /// 0042743 // hydrogen peroxide metabolic process // not recorded /// 0051583 // dopamine uptake // inferred from electronic annotation /// 0051583 // dopamine uptake // not recorded /// 0051899 // membrane depolarization // inferred from electronic annotation /// 0051899 // membrane depolarization // not recorded /// 0060081 // membrane hyperpolarization // inferred from electronic annotation /// 0060081 // membrane hyperpolarization // not recorded /// 0060765 // regulation of androgen receptor signaling pathway // inferred from electronic annotation /// 0060765 // regulation of androgen receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0030424 // axon // inferred from direct assay 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0051920 // peroxiredoxin activity // inferred from electronic annotation /// 0051920 // peroxiredoxin activity // not recorded 1368654_at NM_012991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012991.1 /DB_XREF=gi:6981295 /GEN=Nup50 /FEA=FLmRNA /CNT=17 /TID=Rn.3242.1 /TIER=FL /STK=3 /UG=Rn.3242 /LL=25497 /DEF=Rattus norvegicus Nucleoprotein 50kD (Nup50), mRNA. /PROD=nucleoporin 50 /FL=gb:NM_012991.1 gb:U41845.2 NM_012991 nuclear pore associated protein Npap60 25497 NM_012991 0001841 // neural tube formation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0046907 // intracellular transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from direct assay /// 0005643 // nuclear pore // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1368655_at NM_020074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020074.1 /DB_XREF=gi:9910487 /GEN=Pgsg /FEA=FLmRNA /CNT=13 /TID=Rn.40122.1 /TIER=FL /STK=3 /UG=Rn.40122 /LL=56782 /DEF=Rattus norvegicus proteoglycan peptide core protein (Pgsg), mRNA. /PROD=proteoglycan peptide core protein /FL=gb:K02934.1 gb:NM_020074.1 gb:J03224.1 NM_020074 serglycin Srgn 56782 NM_020074 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from sequence or structural similarity /// 0006915 // apoptosis // inferred from electronic annotation /// 0030502 // negative regulation of bone mineralization // not recorded /// 0030502 // negative regulation of bone mineralization // inferred from sequence or structural similarity /// 0030502 // negative regulation of bone mineralization // inferred from electronic annotation /// 0031214 // biomineral tissue development // inferred from electronic annotation /// 0033364 // mast cell secretory granule organization // not recorded /// 0033364 // mast cell secretory granule organization // inferred from sequence or structural similarity /// 0033364 // mast cell secretory granule organization // inferred from electronic annotation /// 0033371 // T cell secretory granule organization // not recorded /// 0033371 // T cell secretory granule organization // inferred from sequence or structural similarity /// 0033371 // T cell secretory granule organization // inferred from electronic annotation /// 0033373 // maintenance of protease location in mast cell secretory granule // not recorded /// 0033373 // maintenance of protease location in mast cell secretory granule // inferred from sequence or structural similarity /// 0033373 // maintenance of protease location in mast cell secretory granule // inferred from electronic annotation /// 0033382 // maintenance of granzyme B location in T cell secretory granule // not recorded /// 0033382 // maintenance of granzyme B location in T cell secretory granule // inferred from sequence or structural similarity /// 0033382 // maintenance of granzyme B location in T cell secretory granule // inferred from electronic annotation /// 0050710 // negative regulation of cytokine secretion // not recorded /// 0050710 // negative regulation of cytokine secretion // inferred from sequence or structural similarity /// 0050710 // negative regulation of cytokine secretion // inferred from electronic annotation /// 0051605 // protein maturation by peptide bond cleavage // not recorded /// 0051605 // protein maturation by peptide bond cleavage // inferred from sequence or structural similarity /// 0051605 // protein maturation by peptide bond cleavage // inferred from electronic annotation 0000139 // Golgi membrane // inferred from direct assay /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0042588 // zymogen granule // inferred from direct assay /// 0042629 // mast cell granule // not recorded /// 0042629 // mast cell granule // inferred from sequence or structural similarity /// 0042629 // mast cell granule // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005518 // collagen binding // inferred from direct assay 1368656_at NM_053856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053856.1 /DB_XREF=gi:16758721 /GEN=Scg3 /FEA=FLmRNA /CNT=20 /TID=Rn.11093.1 /TIER=FL /STK=3 /UG=Rn.11093 /LL=116635 /DEF=Rattus norvegicus secretogranin III (Scg3), mRNA. /PROD=secretogranin III /FL=gb:NM_053856.1 gb:U02983.1 NM_053856 secretogranin III Scg3 116635 NM_053856 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0030141 // stored secretory granule // not recorded /// 0031410 // cytoplasmic vesicle // traceable author statement 1368657_at NM_133523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133523.1 /DB_XREF=gi:19424169 /GEN=Mmp3 /FEA=FLmRNA /CNT=10 /TID=Rn.32086.1 /TIER=FL /STK=3 /UG=Rn.32086 /LL=171045 /DEF=Rattus norvegicus matrix metalloproteinase 3 (Mmp3), mRNA. /PROD=matrix metalloproteinase 3 /FL=gb:NM_133523.1 NM_133523 matrix metallopeptidase 3 Mmp3 171045 NM_133523 0001666 // response to hypoxia // inferred from expression pattern /// 0006508 // proteolysis // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0030574 // collagen catabolic process // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0034612 // response to tumor necrosis factor // inferred from expression pattern /// 0042060 // wound healing // inferred from expression pattern /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0070555 // response to interleukin-1 // inferred from expression pattern /// 0071460 // cellular response to cell-matrix adhesion // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0044297 // cell body // inferred from direct assay 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1368658_at NM_013166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013166.1 /DB_XREF=gi:6978674 /GEN=Cntf /FEA=FLmRNA /CNT=9 /TID=Rn.6067.1 /TIER=FL /STK=3 /UG=Rn.6067 /LL=25707 /DEF=Rattus norvegicus Ciliary neurotropic factor (Cntf), mRNA. /PROD=ciliary neurotropic factor /FL=gb:NM_013166.1 NM_013166 ciliary neurotrophic factor Cntf 25707 NM_013166 0007259 // JAK-STAT cascade // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from direct assay /// 0007399 // nervous system development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from direct assay /// 0040007 // growth // inferred from electronic annotation /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // inferred from direct assay /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // not recorded /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // inferred from direct assay /// 0043524 // negative regulation of neuron apoptosis // inferred from direct assay /// 0043526 // neuroprotection // inferred from direct assay /// 0046427 // positive regulation of JAK-STAT cascade // inferred from direct assay /// 0046533 // negative regulation of photoreceptor cell differentiation // inferred from electronic annotation /// 0046533 // negative regulation of photoreceptor cell differentiation // not recorded /// 0046668 // regulation of retinal cell programmed cell death // inferred from electronic annotation /// 0046668 // regulation of retinal cell programmed cell death // not recorded /// 0046887 // positive regulation of hormone secretion // inferred from direct assay /// 0048143 // astrocyte activation // inferred from direct assay /// 0048644 // muscle organ morphogenesis // inferred from electronic annotation /// 0048644 // muscle organ morphogenesis // not recorded /// 0048666 // neuron development // inferred from electronic annotation /// 0048666 // neuron development // not recorded /// 0048680 // positive regulation of axon regeneration // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from physical interaction /// 0060075 // regulation of resting membrane potential // inferred from direct assay /// 0060081 // membrane hyperpolarization // inferred from direct assay /// 0070120 // ciliary neurotrophic factor-mediated signaling pathway // inferred from electronic annotation /// 0070120 // ciliary neurotrophic factor-mediated signaling pathway // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0032838 // cell projection cytoplasm // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0005125 // cytokine activity // inferred from direct assay /// 0005127 // ciliary neurotrophic factor receptor binding // inferred from physical interaction /// 0005138 // interleukin-6 receptor binding // inferred from electronic annotation /// 0005138 // interleukin-6 receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // not recorded /// 0008083 // growth factor activity // traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation 1368659_at D38100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D38100.1 /DB_XREF=gi:1000447 /FEA=FLmRNA /CNT=8 /TID=Rn.1874.1 /TIER=FL /STK=3 /UG=Rn.1874 /LL=83784 /UG_GENE=AGT2 /DEF=Rat mRNA for kidney AGT2 precursor, complete cds. /PROD=Rat kidney AGT2 precursor /FL=gb:D38100.1 gb:AB002584.1 gb:NM_031835.1 D38100 alanine-glyoxylate aminotransferase 2 Agxt2 83784 NM_031835 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0008453 // alanine-glyoxylate transaminase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0047305 // (R)-3-amino-2-methylpropionate-pyruvate transaminase activity // inferred from electronic annotation 1368660_at NM_021690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021690.1 /DB_XREF=gi:11067418 /GEN=Epac /FEA=FLmRNA /CNT=7 /TID=Rn.42899.1 /TIER=FL /STK=3 /UG=Rn.42899 /LL=59326 /DEF=Rattus norvegicus cAMP-regulated guanine nucleotide exchange factor I (cAMP-GEFI) (Epac), mRNA. /PROD=cAMP-regulated guanine nucleotide exchangefactor I (cAMP-GEFI) /FL=gb:NM_021690.1 gb:U78167.1 NM_021690 Rap guanine nucleotide exchange factor (GEF) 3 Rapgef3 59326 NM_021690 0001932 // regulation of protein phosphorylation // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005952 // cAMP-dependent protein kinase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from electronic annotation /// 0030552 // cAMP binding // inferred from electronic annotation 1368661_at U51153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U51153.1 /DB_XREF=gi:1663534 /FEA=FLmRNA /CNT=7 /TID=Rn.10821.1 /TIER=FL /STK=3 /UG=Rn.10821 /LL=65202 /UG_GENE=Slc13a2 /DEF=Rattus norvegicus intestinal sodiumdicarboxylate cotransporter mRNA, complete cds. /PROD=intestinal sodiumdicarboxylate cotransporter /FL=gb:U51153.1 gb:AB001321.1 gb:AF058714.1 gb:NM_031746.1 U51153 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2 Slc13a2 65202 NM_031746 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0015361 // low affinity sodium:dicarboxylate symporter activity // not recorded 1368662_at NM_134374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134374.1 /DB_XREF=gi:19705476 /GEN=LIRF /FEA=FLmRNA /CNT=14 /TID=Rn.63970.1 /TIER=FL /STK=3 /UG=Rn.63970 /DEF=Rattus norvegicus RING finger protein LIRF (LIRF), mRNA. /PROD=RING finger protein LIRF /FL=gb:NM_134374.1 gb:AB070897.1 NM_134374 ring finger protein 39 Rnf39 171387 NM_134374 0048168 // regulation of neuronal synaptic plasticity // non-traceable author statement 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368663_at NM_020089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020089.1 /DB_XREF=gi:9910321 /GEN=LOC56764 /FEA=FLmRNA /CNT=10 /TID=Rn.53916.1 /TIER=FL /STK=3 /UG=Rn.53916 /LL=56764 /DEF=Rattus norvegicus dnaj-like protein (LOC56764), mRNA. /PROD=dnaj-like protein /FL=gb:AF154849.1 gb:NM_020089.1 NM_020089 dnaj-like protein LOC56764 56764 NM_020089 0005739 // mitochondrion // not recorded 0031072 // heat shock protein binding // inferred from electronic annotation 1368664_at AI138041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI138041 /DB_XREF=gi:3638818 /DB_XREF=UI-R-C2p-oi-f-11-0-UI.s1 /CLONE=UI-R-C2p-oi-f-11-0-UI /FEA=FLmRNA /CNT=10 /TID=Rn.53916.1 /TIER=ConsEnd /STK=2 /UG=Rn.53916 /LL=56764 /UG_GENE=LOC56764 /UG_TITLE=dnaj-like protein /FL=gb:AF154849.1 gb:NM_020089.1 AI138041 dnaj-like protein LOC56764 56764 NM_020089 0005739 // mitochondrion // not recorded 0031072 // heat shock protein binding // inferred from electronic annotation 1368665_at NM_053418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053418.1 /DB_XREF=gi:16758157 /GEN=Ufd1l /FEA=FLmRNA /CNT=10 /TID=Rn.25813.1 /TIER=FL /STK=3 /UG=Rn.25813 /LL=84478 /DEF=Rattus norvegicus ubiquitin fusion degradation 1-like (Ufd1l), mRNA. /PROD=ubiquitin fusion degradation 1-like /FL=gb:AF234601.1 gb:NM_053418.1 NM_053418 ubiquitin fusion degradation 1 like (yeast) Ufd1l 84478 NM_053418 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1368666_a_at AF081159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF081159.1 /DB_XREF=gi:3695144 /FEA=FLmRNA /CNT=1 /TID=Rn.17279.2 /TIER=ConsEnd /STK=0 /UG=Rn.17279 /LL=170641 /UG_GENE=Cirl3 /DEF=Rattus norvegicus CL3BC mRNA, complete cds. /PROD=CL3BC /FL=gb:AF081159.1 AF081159 latrophilin 3 Lphn3 170641 NM_130822 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0005529 // sugar binding // inferred from electronic annotation 1368667_at NM_031075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031075.1 /DB_XREF=gi:13592018 /GEN=P2rx3 /FEA=FLmRNA /CNT=8 /TID=Rn.10388.1 /TIER=FL /STK=3 /UG=Rn.10388 /LL=81739 /DEF=Rattus norvegicus purinergic receptor P2X ligand-gated ion channel, 3 (P2rx3), mRNA. /PROD=purinergic receptor P2X ligand-gated ionchannel, 3 /FL=gb:NM_031075.1 NM_031075 purinergic receptor P2X, ligand-gated ion channel, 3 P2rx3 81739 NM_031075 0001666 // response to hypoxia // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // inferred from electronic annotation /// 0009266 // response to temperature stimulus // inferred from electronic annotation /// 0009408 // response to heat // inferred from electronic annotation /// 0009409 // response to cold // inferred from electronic annotation /// 0009743 // response to carbohydrate stimulus // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0014832 // urinary bladder smooth muscle contraction // inferred from electronic annotation /// 0019228 // regulation of action potential in neuron // inferred from direct assay /// 0030432 // peristalsis // inferred from electronic annotation /// 0033198 // response to ATP // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation /// 0048266 // behavioral response to pain // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from direct assay 0005624 // membrane fraction // inferred from direct assay /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0044424 // intracellular part // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0004931 // extracellular ATP-gated cation channel activity // inferred from direct assay /// 0004931 // extracellular ATP-gated cation channel activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation 1368668_at NM_053866 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053866.1 /DB_XREF=gi:16758975 /GEN=Plaa /FEA=FLmRNA /CNT=8 /TID=Rn.22260.1 /TIER=FL /STK=3 /UG=Rn.22260 /LL=116645 /DEF=Rattus norvegicus phospholipase A2, activating protein (Plaa), mRNA. /PROD=phospholipase A2, activating protein /FL=gb:NM_053866.1 gb:U17901.1 NM_053866 phospholipase A2, activating protein Plaa 116645 NM_053866 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016005 // phospholipase A2 activator activity // inferred from electronic annotation /// 0016005 // phospholipase A2 activator activity // not recorded 1368669_at NM_019354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019354.1 /DB_XREF=gi:9507230 /GEN=Ucp2 /FEA=FLmRNA /CNT=8 /TID=Rn.13333.1 /TIER=FL /STK=3 /UG=Rn.13333 /LL=54315 /DEF=Rattus norvegicus Uncoupling protein 2, mitochondrial (Ucp2), mRNA. /PROD=Uncoupling protein 2, mitochondrial /FL=gb:NM_019354.1 gb:AF039033.1 gb:AB005143.1 gb:AB006613.1 gb:AB010743.1 NM_019354 uncoupling protein 2 (mitochondrial, proton carrier) Ucp2 54315 NM_019354 0000303 // response to superoxide // inferred from direct assay /// 0001666 // response to hypoxia // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0006839 // mitochondrial transport // inferred from direct assay /// 0006839 // mitochondrial transport // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070542 // response to fatty acid // inferred from expression pattern 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1368670_a_at L36467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L36467.1 /DB_XREF=gi:703258 /FEA=FLmRNA /CNT=1 /TID=Rn.10003.3 /TIER=FL /STK=1 /UG=Rn.10003 /LL=25638 /UG_GENE=Pde4a /DEF=Rattus norvegicus 3,5-cyclic AMP phosphodiesterase mRNA, complete cds. /PROD=3,5-cyclic AMP phosphodiesterase /FL=gb:L36467.1 L36467 phosphodiesterase 4A, cAMP-specific (phosphodiesterase E2 dunce homolog, Drosophila) Pde4a 25638 NM_013101 0006198 // cAMP catabolic process // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from direct assay /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368671_at NM_022524 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022524.1 /DB_XREF=gi:11993951 /GEN=Srpx /FEA=FLmRNA /CNT=7 /TID=Rn.1489.1 /TIER=FL /STK=3 /UG=Rn.1489 /LL=64316 /DEF=Rattus norvegicus sushi-repeat-containing protein, X chromosome (Srpx), mRNA. /PROD=down-regulated by v-src gene /FL=gb:NM_022524.1 gb:D78359.1 NM_022524 sushi-repeat-containing protein, X-linked Srpx 64316 NM_022524 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded 1368672_at NM_019168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019168.1 /DB_XREF=gi:9506398 /GEN=Arg2 /FEA=FLmRNA /CNT=7 /TID=Rn.11055.1 /TIER=FL /STK=3 /UG=Rn.11055 /LL=29215 /DEF=Rattus norvegicus arginase type II (Arg2), mRNA. /PROD=arginase type II /FL=gb:U90887.1 gb:NM_019168.1 NM_019168 arginase type II Arg2 29215 NM_019168 0000050 // urea cycle // inferred from electronic annotation /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0006525 // arginine metabolic process // inferred from mutant phenotype /// 0006525 // arginine metabolic process // inferred from electronic annotation /// 0006915 // apoptosis // inferred from expression pattern /// 0006941 // striated muscle contraction // not recorded /// 0006941 // striated muscle contraction // inferred from electronic annotation /// 0007494 // midgut development // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0009635 // response to herbicide // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010269 // response to selenium ion // inferred from expression pattern /// 0010963 // regulation of L-arginine import // inferred from direct assay /// 0014075 // response to amine stimulus // inferred from expression pattern /// 0019547 // arginine catabolic process to ornithine // inferred from direct assay /// 0019547 // arginine catabolic process to ornithine // traceable author statement /// 0030324 // lung development // inferred from expression pattern /// 0033197 // response to vitamin E // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0045428 // regulation of nitric oxide biosynthetic process // inferred from expression pattern /// 0045988 // negative regulation of striated muscle contraction // inferred from mutant phenotype /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0046689 // response to mercury ion // inferred from expression pattern /// 0048678 // response to axon injury // inferred from expression pattern /// 0051001 // negative regulation of nitric-oxide synthase activity // inferred from mutant phenotype /// 0060135 // maternal process involved in female pregnancy // inferred from expression pattern /// 0071222 // cellular response to lipopolysaccharide // inferred from expression pattern /// 0071346 // cellular response to interferon-gamma // inferred from expression pattern /// 0071353 // cellular response to interleukin-4 // inferred from expression pattern /// 0071549 // cellular response to dexamethasone stimulus // inferred from expression pattern 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from mutant phenotype /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0004053 // arginase activity // inferred from direct assay /// 0004053 // arginase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016813 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050998 // nitric-oxide synthase binding // inferred from physical interaction 1368673_at NM_031764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031764.1 /DB_XREF=gi:13929079 /GEN=Ddr2 /FEA=FLmRNA /CNT=7 /TID=Rn.36249.1 /TIER=FL /STK=3 /UG=Rn.36249 /LL=83573 /DEF=Rattus norvegicus discoidin domain receptor family, member 2 (Ddr2), mRNA. /PROD=discoidin domain receptor family, member 2 /FL=gb:AF016247.1 gb:NM_031764.1 NM_031764 discoidin domain receptor tyrosine kinase 2 Ddr2 685781 NM_031764 0001558 // regulation of cell growth // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005518 // collagen binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1368674_at NM_022268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022268.1 /DB_XREF=gi:11560086 /GEN=Pygl /FEA=FLmRNA /CNT=6 /TID=Rn.21399.1 /TIER=FL /STK=3 /UG=Rn.21399 /LL=64035 /DEF=Rattus norvegicus liver glycogen phosphorylase (Pygl), mRNA. /PROD=liver glycogen phosphorylase /FL=gb:NM_022268.1 NM_022268 phosphorylase, glycogen, liver Pygl 64035 NM_022268 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from direct assay /// 0005977 // glycogen metabolic process // not recorded /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005980 // glycogen catabolic process // inferred from direct assay /// 0006015 // 5-phosphoribose 1-diphosphate biosynthetic process // inferred from mutant phenotype /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042593 // glucose homeostasis // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005625 // soluble fraction // not recorded /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0002060 // purine binding // inferred from electronic annotation /// 0002060 // purine binding // not recorded /// 0004645 // phosphorylase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005529 // sugar binding // inferred from direct assay /// 0008144 // drug binding // inferred from direct assay /// 0008144 // drug binding // not recorded /// 0008144 // drug binding // inferred from electronic annotation /// 0008184 // glycogen phosphorylase activity // inferred from direct assay /// 0008184 // glycogen phosphorylase activity // inferred from mutant phenotype /// 0008184 // glycogen phosphorylase activity // not recorded /// 0008184 // glycogen phosphorylase activity // inferred from electronic annotation /// 0016208 // AMP binding // inferred from electronic annotation /// 0016208 // AMP binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0019842 // vitamin binding // inferred from electronic annotation /// 0019842 // vitamin binding // not recorded /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0032052 // bile acid binding // inferred from electronic annotation /// 0032052 // bile acid binding // not recorded /// 0042803 // protein homodimerization activity // inferred by curator /// 0042803 // protein homodimerization activity // inferred from direct assay 1368675_at NM_032084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032084.1 /DB_XREF=gi:14091778 /GEN=Chn2 /FEA=FLmRNA /CNT=6 /TID=Rn.10521.1 /TIER=FL /STK=3 /UG=Rn.10521 /LL=84031 /DEF=Rattus norvegicus chimerin (chimaerin) 2 (Chn2), mRNA. /PROD=chimerin (chimaerin) 2 /FL=gb:NM_032084.1 gb:L07494.1 NM_032084 chimerin (chimaerin) 2 Chn2 84031 NM_032084 0001675 // acrosome assembly // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0001565 // phorbol ester receptor activity // traceable author statement /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0030675 // Rac GTPase activator activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1368676_at NM_023024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023024.1 /DB_XREF=gi:12711693 /GEN=Dnch2 /FEA=FLmRNA /CNT=14 /TID=Rn.44896.1 /TIER=FL /STK=3 /UG=Rn.44896 /LL=65209 /DEF=Rattus norvegicus cytoplasmic dynein heavy chain 2 (Dnch2), mRNA. /PROD=cytoplasmic dynein heavy chain 2 /FL=gb:NM_023024.1 gb:AB041881.1 NM_023024 dynein cytoplasmic 2 heavy chain 1 Dync2h1 65209 NM_023024 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007030 // Golgi organization // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // not recorded /// 0008105 // asymmetric protein localization // not recorded /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0016485 // protein processing // not recorded /// 0030030 // cell projection organization // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030900 // forebrain development // not recorded /// 0042384 // cilium assembly // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030286 // dynein complex // inferred from electronic annotation /// 0035085 // cilium axoneme // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1368677_at NM_012513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012513.1 /DB_XREF=gi:6978568 /GEN=Bdnf /FEA=FLmRNA /CNT=9 /TID=Rn.11266.1 /TIER=FL /STK=3 /UG=Rn.11266 /LL=24225 /DEF=Rattus norvegicus Brain derived neurothrophic factor (Bdnf), mRNA. /PROD=brain derived neurothrophic factor /FL=gb:NM_012513.1 gb:M61175.1 NM_012513 brain derived neurotrophic factor Bdnf 24225 NM_012513 0001657 // ureteric bud development // not recorded /// 0006120 // mitochondrial electron transport, NADH to ubiquinone // inferred from mutant phenotype /// 0006916 // anti-apoptosis // not recorded /// 0007399 // nervous system development // inferred from direct assay /// 0007406 // negative regulation of neuroblast proliferation // not recorded /// 0007411 // axon guidance // not recorded /// 0007412 // axon target recognition // not recorded /// 0007610 // behavior // not recorded /// 0007611 // learning or memory // not recorded /// 0007631 // feeding behavior // not recorded /// 0008038 // neuron recognition // not recorded /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0014047 // glutamate secretion // not recorded /// 0016358 // dendrite development // not recorded /// 0019222 // regulation of metabolic process // not recorded /// 0021675 // nerve development // not recorded /// 0030182 // neuron differentiation // traceable author statement /// 0042490 // mechanoreceptor differentiation // not recorded /// 0042493 // response to drug // not recorded /// 0042596 // fear response // not recorded /// 0043523 // regulation of neuron apoptosis // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045843 // negative regulation of striated muscle tissue development // inferred from mutant phenotype /// 0046668 // regulation of retinal cell programmed cell death // not recorded /// 0048167 // regulation of synaptic plasticity // not recorded /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from direct assay /// 0048172 // regulation of short-term neuronal synaptic plasticity // inferred from direct assay /// 0048839 // inner ear development // not recorded /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from mutant phenotype 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // not recorded /// 0008021 // synaptic vesicle // inferred from direct assay /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded 0005102 // receptor binding // inferred from electronic annotation /// 0005169 // neurotrophin TRKB receptor binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation 1368678_at X67108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X67108.1 /DB_XREF=gi:55820 /GEN=BDNF gene /FEA=FLmRNA /CNT=9 /TID=Rn.11266.1 /TIER=ConsEnd /STK=0 /UG=Rn.11266 /LL=24225 /DEF=R.norvegicus mRNA for brain-derived neurotrophic factor (exon IV). /PROD=brain-derived neurotrophic factor /FL=gb:NM_012513.1 gb:M61175.1 X67108 brain derived neurotrophic factor Bdnf 24225 NM_012513 0001657 // ureteric bud development // not recorded /// 0006120 // mitochondrial electron transport, NADH to ubiquinone // inferred from mutant phenotype /// 0006916 // anti-apoptosis // not recorded /// 0007399 // nervous system development // inferred from direct assay /// 0007406 // negative regulation of neuroblast proliferation // not recorded /// 0007411 // axon guidance // not recorded /// 0007412 // axon target recognition // not recorded /// 0007610 // behavior // not recorded /// 0007611 // learning or memory // not recorded /// 0007631 // feeding behavior // not recorded /// 0008038 // neuron recognition // not recorded /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0014047 // glutamate secretion // not recorded /// 0016358 // dendrite development // not recorded /// 0019222 // regulation of metabolic process // not recorded /// 0021675 // nerve development // not recorded /// 0030182 // neuron differentiation // traceable author statement /// 0042490 // mechanoreceptor differentiation // not recorded /// 0042493 // response to drug // not recorded /// 0042596 // fear response // not recorded /// 0043523 // regulation of neuron apoptosis // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045843 // negative regulation of striated muscle tissue development // inferred from mutant phenotype /// 0046668 // regulation of retinal cell programmed cell death // not recorded /// 0048167 // regulation of synaptic plasticity // not recorded /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from direct assay /// 0048172 // regulation of short-term neuronal synaptic plasticity // inferred from direct assay /// 0048839 // inner ear development // not recorded /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from mutant phenotype 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // not recorded /// 0008021 // synaptic vesicle // inferred from direct assay /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded 0005102 // receptor binding // inferred from electronic annotation /// 0005169 // neurotrophin TRKB receptor binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation 1368679_a_at L14782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L14782.1 /DB_XREF=gi:294578 /FEA=FLmRNA /CNT=9 /TID=Rn.4338.1 /TIER=FL /STK=1 /UG=Rn.4338 /LL=81515 /UG_GENE=Lyn /DEF=Rattus norvegicus lyn A protein tyrosine kinase mRNA, complete cds. /PROD=lyn A protein tyrosine kinase /FL=gb:NM_030857.1 gb:L14782.1 gb:AF000300.1 gb:L14951.1 L14782 v-yes-1 Yamaguchi sarcoma viral related oncogene homolog Lyn 81515 NM_001111098 /// NM_030857 0002553 // histamine secretion by mast cell // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0006991 // response to sterol depletion // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0009636 // response to toxin // inferred from expression pattern /// 0009725 // response to hormone stimulus // not recorded /// 0009725 // response to hormone stimulus // inferred from sequence or structural similarity /// 0009725 // response to hormone stimulus // inferred from electronic annotation /// 0009743 // response to carbohydrate stimulus // inferred from expression pattern /// 0014003 // oligodendrocyte development // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // not recorded /// 0030218 // erythrocyte differentiation // not recorded /// 0030218 // erythrocyte differentiation // inferred from sequence or structural similarity /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from electronic annotation /// 0031175 // neuron projection development // not recorded /// 0031668 // cellular response to extracellular stimulus // inferred from expression pattern /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0034605 // cellular response to heat // inferred from expression pattern /// 0042327 // positive regulation of phosphorylation // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0042531 // positive regulation of tyrosine phosphorylation of STAT protein // not recorded /// 0042531 // positive regulation of tyrosine phosphorylation of STAT protein // inferred from sequence or structural similarity /// 0042531 // positive regulation of tyrosine phosphorylation of STAT protein // inferred from electronic annotation /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0046777 // protein autophosphorylation // not recorded /// 0048678 // response to axon injury // inferred from expression pattern /// 0050663 // cytokine secretion // inferred from mutant phenotype /// 0050853 // B cell receptor signaling pathway // inferred from electronic annotation /// 0050853 // B cell receptor signaling pathway // not recorded /// 0051272 // positive regulation of cellular component movement // not recorded /// 0051279 // regulation of release of sequestered calcium ion into cytosol // inferred from mutant phenotype /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0060252 // positive regulation of glial cell proliferation // inferred from direct assay /// 0060369 // positive regulation of Fc receptor mediated stimulatory signaling pathway // inferred from mutant phenotype /// 0070304 // positive regulation of stress-activated protein kinase signaling cascade // not recorded /// 0070447 // positive regulation of oligodendrocyte progenitor proliferation // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030061 // mitochondrial crista // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0034666 // alpha2-beta1 integrin complex // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0045121 // membrane raft // inferred from direct assay /// 0045121 // membrane raft // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005161 // platelet-derived growth factor receptor binding // inferred from physical interaction /// 0005178 // integrin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded /// 0019899 // enzyme binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from physical interaction /// 0032403 // protein complex binding // not recorded /// 0032403 // protein complex binding // inferred from electronic annotation /// 0043015 // gamma-tubulin binding // inferred from direct assay /// 0043208 // glycosphingolipid binding // inferred from physical interaction /// 0051219 // phosphoprotein binding // inferred from physical interaction 1368680_a_at AB013455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB013455.1 /DB_XREF=gi:3868789 /GEN=NaPi-2 /FEA=FLmRNA /CNT=9 /TID=Rn.37519.2 /TIER=FL /STK=4 /UG=Rn.37519 /LL=25548 /DEF=Rattus norvegicus mRNA for NaPi-2 gamma, complete cds. /PROD=NaPi-2 gamma /FL=gb:AB013455.1 AB013455 solute carrier family 34 (sodium phosphate), member 1 Slc34a1 25548 NM_013030 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006817 // phosphate transport // inferred from electronic annotation /// 0006817 // phosphate transport // inferred from mutant phenotype /// 0006817 // phosphate transport // not recorded /// 0010288 // response to lead ion // inferred from electronic annotation /// 0010288 // response to lead ion // not recorded /// 0032026 // response to magnesium ion // inferred from expression pattern /// 0046686 // response to cadmium ion // inferred from electronic annotation /// 0046686 // response to cadmium ion // not recorded /// 0046689 // response to mercury ion // inferred from electronic annotation /// 0046689 // response to mercury ion // not recorded /// 0046849 // bone remodeling // inferred from electronic annotation /// 0046849 // bone remodeling // not recorded /// 0055062 // phosphate ion homeostasis // inferred from electronic annotation /// 0055062 // phosphate ion homeostasis // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from direct assay 0005515 // protein binding // not recorded /// 0015293 // symporter activity // inferred from electronic annotation /// 0015321 // sodium-dependent phosphate transmembrane transporter activity // inferred from electronic annotation /// 0015321 // sodium-dependent phosphate transmembrane transporter activity // inferred from mutant phenotype /// 0015321 // sodium-dependent phosphate transmembrane transporter activity // not recorded 1368681_at NM_012636 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012636.1 /DB_XREF=gi:6981437 /GEN=Pthlh /FEA=FLmRNA /CNT=9 /TID=Rn.9750.1 /TIER=FL /STK=3 /UG=Rn.9750 /LL=24695 /DEF=Rattus norvegicus Parathyroid-like peptide (Pthlh), mRNA. /PROD=parathyroid-like peptide /FL=gb:M21967.1 gb:NM_012636.1 gb:M31603.1 NM_012636 parathyroid hormone-like hormone Pthlh 24695 NM_012636 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001958 // endochondral ossification // inferred from electronic annotation /// 0001958 // endochondral ossification // not recorded /// 0002076 // osteoblast development // not recorded /// 0002076 // osteoblast development // traceable author statement /// 0002076 // osteoblast development // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from direct assay /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007492 // endoderm development // inferred from electronic annotation /// 0007492 // endoderm development // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0016485 // protein processing // inferred from electronic annotation /// 0016485 // protein processing // not recorded /// 0030282 // bone mineralization // not recorded /// 0030819 // positive regulation of cAMP biosynthetic process // not recorded /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0032331 // negative regulation of chondrocyte differentiation // inferred from electronic annotation /// 0032331 // negative regulation of chondrocyte differentiation // not recorded /// 0043129 // surfactant homeostasis // inferred from electronic annotation /// 0043129 // surfactant homeostasis // not recorded /// 0043433 // negative regulation of transcription factor activity // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048286 // lung alveolus development // not recorded /// 0060649 // mammary gland bud elongation // inferred from electronic annotation /// 0060649 // mammary gland bud elongation // not recorded /// 0060659 // nipple sheath formation // inferred from electronic annotation /// 0060659 // nipple sheath formation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005179 // hormone activity // inferred from direct assay /// 0005179 // hormone activity // inferred from electronic annotation 1368682_at NM_057210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057210.1 /DB_XREF=gi:17105365 /GEN=Sv2a /FEA=FLmRNA /CNT=8 /TID=Rn.11264.1 /TIER=FL /STK=3 /UG=Rn.11264 /LL=117559 /DEF=Rattus norvegicus synaptic vesicle glycoprotein 2 a (Sv2a), mRNA. /PROD=synaptic vesicle glycoprotein 2 a /FL=gb:L05435.1 gb:NM_057210.1 NM_057210 synaptic vesicle glycoprotein 2a Sv2a 117559 NM_057210 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // traceable author statement /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0008021 // synaptic vesicle // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from direct assay /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0031594 // neuromuscular junction // not recorded /// 0045202 // synapse // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005215 // transporter activity // traceable author statement /// 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1368683_at NM_133306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133306.1 /DB_XREF=gi:18959247 /GEN=Olr1 /FEA=FLmRNA /CNT=8 /TID=Rn.14541.1 /TIER=FL /STK=3 /UG=Rn.14541 /LL=140914 /DEF=Rattus norvegicus oxidised low density lipoprotein (lectin-like) receptor 1 (Olr1), mRNA. /PROD=oxidised low density lipoprotein (lectin-like)receptor 1 /FL=gb:NM_133306.1 gb:AB005900.1 NM_133306 oxidized low density lipoprotein (lectin-like) receptor 1 Olr1 140914 NM_133306 0006954 // inflammatory response // inferred from mutant phenotype /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007159 // leukocyte cell-cell adhesion // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0008219 // cell death // inferred from mutant phenotype /// 0042157 // lipoprotein metabolic process // inferred from mutant phenotype /// 0042542 // response to hydrogen peroxide // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0005041 // low-density lipoprotein receptor activity // not recorded /// 0005041 // low-density lipoprotein receptor activity // traceable author statement /// 0005041 // low-density lipoprotein receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1368684_at NM_022954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022954.1 /DB_XREF=gi:12621131 /GEN=Fat2 /FEA=FLmRNA /CNT=7 /TID=Rn.30001.1 /TIER=FL /STK=3 /UG=Rn.30001 /LL=65048 /DEF=Rattus norvegicus MEGF1 (Fat2), mRNA. /PROD=MEGF1 /FL=gb:AB011527.1 gb:NM_022954.1 NM_022954 FAT tumor suppressor homolog 2 (Drosophila) Fat2 65048 NM_022954 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1368685_at NM_031022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031022.1 /DB_XREF=gi:13591931 /GEN=Cspg4 /FEA=FLmRNA /CNT=7 /TID=Rn.10381.1 /TIER=FL /STK=3 /UG=Rn.10381 /LL=81651 /DEF=Rattus norvegicus membrane-spanning proteoglycan NG2 (Cspg4), mRNA. /PROD=membrane-spanning proteoglycan NG2 /FL=gb:NM_031022.1 NM_031022 chondroitin sulfate proteoglycan 4 Cspg4 81651 NM_031022 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0001525 // angiogenesis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0008347 // glial cell migration // inferred from electronic annotation /// 0008347 // glial cell migration // not recorded /// 0016322 // neuron remodeling // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0048663 // neuron fate commitment // inferred from expression pattern /// 0048771 // tissue remodeling // inferred from electronic annotation /// 0050771 // negative regulation of axonogenesis // traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // traceable author statement /// 0031258 // lamellipodium membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0005082 // receptor signaling protein tyrosine phosphatase signaling protein activity // not recorded /// 0005515 // protein binding // not recorded /// 0005518 // collagen binding // inferred from physical interaction 1368686_at NM_012901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012901.1 /DB_XREF=gi:6978496 /GEN=Ambp /FEA=FLmRNA /CNT=7 /TID=Rn.18721.1 /TIER=FL /STK=3 /UG=Rn.18721 /DEF=Rattus norvegicus Alpha-1 microglobulinbikunin (Ambp), mRNA. /PROD=alpha-1 microglobulinbikunin /FL=gb:NM_012901.1 NM_012901 alpha-1-microglobulin/bikunin precursor Ambp 25377 NM_012901 0006810 // transport // inferred from electronic annotation /// 0018298 // protein-chromophore linkage // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0019862 // IgA binding // not recorded /// 0019862 // IgA binding // inferred from sequence or structural similarity /// 0019862 // IgA binding // inferred from electronic annotation /// 0020037 // heme binding // not recorded /// 0020037 // heme binding // inferred from sequence or structural similarity /// 0020037 // heme binding // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation 1368687_at NM_031578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031578.1 /DB_XREF=gi:13928783 /GEN=Tesk1 /FEA=FLmRNA /CNT=6 /TID=Rn.7006.1 /TIER=FL /STK=3 /UG=Rn.7006 /LL=29460 /DEF=Rattus norvegicus testis specific protein kinase 1 (Tesk1), mRNA. /PROD=testis specific protein kinase 1 /FL=gb:NM_031578.1 gb:D50864.1 NM_031578 testis-specific kinase 1 Tesk1 29460 NM_031578 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from mutant phenotype /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368688_at NM_022695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022695.1 /DB_XREF=gi:12083650 /GEN=Ntsr2 /FEA=FLmRNA /CNT=6 /TID=Rn.36220.1 /TIER=FL /STK=3 /UG=Rn.36220 /LL=64636 /DEF=Rattus norvegicus NTR2 receptor (Ntsr2), mRNA. /PROD=NTR2 receptor /FL=gb:NM_022695.1 NM_022695 neurotensin receptor 2 Ntsr2 64636 NM_022695 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // not recorded /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007268 // synaptic transmission // not recorded /// 0042391 // regulation of membrane potential // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0016492 // neurotensin receptor activity, G-protein coupled // inferred from electronic annotation /// 0016492 // neurotensin receptor activity, G-protein coupled // not recorded 1368689_at NM_019241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019241.1 /DB_XREF=gi:9506732 /GEN=Gjb5 /FEA=FLmRNA /CNT=6 /TID=Rn.16074.1 /TIER=FL /STK=3 /UG=Rn.16074 /LL=29586 /DEF=Rattus norvegicus gap junction membrane channel protein beta 5 (Gjb5), mRNA. /PROD=gap junction membrane channel protein beta 5 /FL=gb:NM_019241.1 NM_019241 gap junction protein, beta 5 Gjb5 29586 NM_019241 0007154 // cell communication // inferred from electronic annotation /// 0060708 // spongiotrophoblast differentiation // inferred from electronic annotation /// 0060708 // spongiotrophoblast differentiation // not recorded /// 0060713 // labyrinthine layer morphogenesis // inferred from electronic annotation /// 0060713 // labyrinthine layer morphogenesis // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005921 // gap junction // inferred from electronic annotation /// 0005922 // connexon complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 1368690_a_at U47331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U47331.1 /DB_XREF=gi:1197725 /FEA=FLmRNA /CNT=1 /TID=Rn.9682.2 /TIER=FL /STK=1 /UG=Rn.9682 /LL=24417 /UG_GENE=Grm4 /DEF=Rattus norvegicus metabotropic glutamate receptor 4b mRNA, complete cds. /PROD=metabotropic glutamate receptor 4b /FL=gb:U47331.1 U47331 glutamate receptor, metabotropic 4 Grm4 24417 NM_022666 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007196 // inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway // inferred from electronic annotation /// 0007196 // inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007612 // learning // inferred from electronic annotation /// 0007612 // learning // not recorded /// 0008285 // negative regulation of cell proliferation // traceable author statement /// 0014051 // gamma-aminobutyric acid secretion // traceable author statement /// 0031175 // neuron projection development // traceable author statement /// 0035249 // synaptic transmission, glutamatergic // traceable author statement /// 0043066 // negative regulation of apoptosis // traceable author statement /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0043526 // neuroprotection // non-traceable author statement /// 0050805 // negative regulation of synaptic transmission // traceable author statement /// 0051932 // synaptic transmission, GABAergic // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0043195 // terminal button // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0048787 // presynaptic active zone membrane // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1368691_at M85036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M85036.2 /DB_XREF=gi:5263284 /GEN=GLUR3 /FEA=FLmRNA /CNT=5 /TID=Rn.74049.1 /TIER=FL /STK=3 /UG=Rn.74049 /LL=29628 /DEF=Rattus norvegicus glutamate receptor subunit 3 (GLUR3) non-NMDA mRNA, complete cds. /PROD=glutamate receptor subunit 3 /FL=gb:M85036.2 gb:NM_032990.1 M85036 glutamate receptor, ionotrophic, AMPA 3 Gria3 29628 NM_001112742 /// NM_032990 0001919 // regulation of receptor recycling // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007616 // long-term memory // inferred from mutant phenotype /// 0009636 // response to toxin // inferred from mutant phenotype /// 0010226 // response to lithium ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0021510 // spinal cord development // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0042220 // response to cocaine // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045838 // positive regulation of membrane potential // inferred from mutant phenotype /// 0046685 // response to arsenic // inferred from expression pattern /// 0051602 // response to electrical stimulus // inferred from expression pattern /// 0060992 // response to fungicide // inferred from expression pattern /// 0071230 // cellular response to amino acid stimulus // inferred from expression pattern /// 0071359 // cellular response to dsRNA // inferred from expression pattern /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern /// 0071375 // cellular response to peptide hormone stimulus // inferred from expression pattern /// 0071407 // cellular response to organic cyclic substance // inferred from expression pattern /// 0071418 // cellular response to amine stimulus // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0008328 // ionotropic glutamate receptor complex // traceable author statement /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0030666 // endocytic vesicle membrane // not recorded /// 0031594 // neuromuscular junction // inferred from direct assay /// 0032279 // asymmetric synapse // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043083 // synaptic cleft // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0043234 // protein complex // inferred from physical interaction /// 0043234 // protein complex // inferred from direct assay /// 0044309 // neuron spine // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0001965 // G-protein alpha-subunit binding // inferred from physical interaction /// 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from direct assay /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0004971 // alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity // inferred from direct assay /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008179 // adenylate cyclase binding // inferred from direct assay /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0031267 // small GTPase binding // inferred from physical interaction /// 0031489 // myosin V binding // inferred from physical interaction /// 0031681 // G-protein beta-subunit binding // inferred from direct assay /// 0031698 // beta-2 adrenergic receptor binding // inferred from physical interaction /// 0051018 // protein kinase A binding // inferred from direct assay 1368692_a_at AW140851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW140851 /DB_XREF=gi:6160689 /DB_XREF=EST290933 /CLONE=RGIAV46 /FEA=mRNA /CNT=5 /TID=Rn.10985.2 /TIER=ConsEnd /STK=0 /UG=Rn.10985 /LL=29194 /UG_GENE=Chk /UG_TITLE=choline kinase AW140851 choline kinase alpha Chka 29194 NM_017127 0006646 // phosphatidylethanolamine biosynthetic process // not recorded /// 0006646 // phosphatidylethanolamine biosynthetic process // inferred from sequence or structural similarity /// 0006646 // phosphatidylethanolamine biosynthetic process // inferred from electronic annotation /// 0006656 // phosphatidylcholine biosynthetic process // not recorded /// 0006656 // phosphatidylcholine biosynthetic process // inferred from sequence or structural similarity /// 0006656 // phosphatidylcholine biosynthetic process // inferred from electronic annotation /// 0006657 // CDP-choline pathway // not recorded /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0019695 // choline metabolic process // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004103 // choline kinase activity // inferred from direct assay /// 0004103 // choline kinase activity // not recorded /// 0004103 // choline kinase activity // inferred from sequence or structural similarity /// 0004103 // choline kinase activity // traceable author statement /// 0004103 // choline kinase activity // inferred from electronic annotation /// 0004104 // cholinesterase activity // inferred from electronic annotation /// 0004104 // cholinesterase activity // not recorded /// 0004305 // ethanolamine kinase activity // not recorded /// 0004305 // ethanolamine kinase activity // inferred from sequence or structural similarity /// 0004305 // ethanolamine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008144 // drug binding // not recorded /// 0008144 // drug binding // inferred from sequence or structural similarity /// 0008144 // drug binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0033265 // choline binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1368693_at NM_024145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024145.1 /DB_XREF=gi:13162330 /GEN=Fgr /FEA=FLmRNA /CNT=5 /TID=Rn.11309.1 /TIER=FL /STK=3 /UG=Rn.11309 /LL=79113 /DEF=Rattus norvegicus FGR (Fgr), mRNA. /PROD=FGR /FL=gb:NM_024145.1 NM_024145 Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog Fgr 79113 NM_024145 0006468 // protein phosphorylation // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // not recorded /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368694_at NM_021677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021677.1 /DB_XREF=gi:13487907 /GEN=LOC59313 /FEA=FLmRNA /CNT=5 /TID=Rn.42878.1 /TIER=FL /STK=3 /UG=Rn.42878 /LL=59313 /DEF=Rattus norvegicus pregnancy-specific beta 1-glycoprotein (LOC59313), mRNA. /PROD=pregnancy-specific beta 1-glycoprotein /FL=gb:NM_021677.1 gb:U66292.1 NM_021677 pregnancy-specific beta 1-glycoprotein Psgb1 59313 NM_021677 0007565 // female pregnancy // inferred from electronic annotation 1368695_at NM_016995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_016995.1 /DB_XREF=gi:8393026 /GEN=C4bpb /FEA=FLmRNA /CNT=5 /TID=Rn.11151.1 /TIER=FL /STK=3 /UG=Rn.11151 /LL=24236 /DEF=Rattus norvegicus Complement component 4 binding protein, beta (C4bpb), mRNA. /PROD=complement component 4 binding protein, beta /FL=gb:NM_016995.1 NM_016995 complement component 4 binding protein, beta C4bpb 24236 NM_016995 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 1368696_at NM_022008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022008.1 /DB_XREF=gi:11612662 /GEN=Fxyd7 /FEA=FLmRNA /CNT=5 /TID=Rn.33248.1 /TIER=FL /STK=3 /UG=Rn.33248 /LL=63848 /DEF=Rattus norvegicus FXYD domain-containing ion transport regulator 7 (Fxyd7), mRNA. /PROD=FXYD domain-containing ion transport regulator7 /FL=gb:NM_022008.1 NM_022008 FXYD domain-containing ion transport regulator 7 Fxyd7 63848 NM_022008 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0043269 // regulation of ion transport // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0051117 // ATPase binding // inferred from physical interaction 1368697_at NM_017098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017098.1 /DB_XREF=gi:8393345 /GEN=Fabp6 /FEA=FLmRNA /CNT=5 /TID=Rn.10008.1 /TIER=FL /STK=3 /UG=Rn.10008 /LL=25440 /DEF=Rattus norvegicus Fatty acid binding protein 6 (bile acid-binding protein) (Fabp6), mRNA. /PROD=fatty acid binding protein 6 (bile acid-bindingprotein) /FL=gb:NM_017098.1 gb:L22788.1 NM_017098 fatty acid binding protein 6, ileal Fabp6 25440 NM_017098 0006810 // transport // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005504 // fatty acid binding // inferred from direct assay /// 0008289 // lipid binding // inferred from electronic annotation 1368698_at J03754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J03754.1 /DB_XREF=gi:203048 /GEN=PMCA /FEA=FLmRNA /CNT=14 /TID=Rn.11280.1 /TIER=FL /STK=3 /UG=Rn.11280 /LL=24215 /DEF=Rat plasma membrane Ca2+ ATPase-isoform 2 mRNA, complete cds. /PROD=ATPase /FL=gb:J03754.1 gb:NM_012508.1 J03754 ATPase, Ca++ transporting, plasma membrane 2 Atp2b2 24215 NM_012508 0000902 // cell morphogenesis // not recorded /// 0003407 // neural retina development // inferred from expression pattern /// 0006200 // ATP catabolic process // not recorded /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006996 // organelle organization // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0007595 // lactation // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0007605 // sensory perception of sound // inferred from sequence or structural similarity /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008361 // regulation of cell size // not recorded /// 0021549 // cerebellum development // not recorded /// 0021692 // cerebellar Purkinje cell layer morphogenesis // not recorded /// 0021702 // cerebellar Purkinje cell differentiation // not recorded /// 0021707 // cerebellar granule cell differentiation // not recorded /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from sequence or structural similarity /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0040011 // locomotion // not recorded /// 0042428 // serotonin metabolic process // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0045299 // otolith mineralization // not recorded /// 0046068 // cGMP metabolic process // not recorded /// 0048167 // regulation of synaptic plasticity // not recorded /// 0048839 // inner ear development // not recorded /// 0050808 // synapse organization // not recorded /// 0050885 // neuromuscular process controlling balance // not recorded /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // not recorded /// 0051928 // positive regulation of calcium ion transport // not recorded /// 0060088 // auditory receptor cell stereocilium organization // not recorded /// 0060113 // inner ear receptor cell differentiation // not recorded 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005792 // microsome // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005929 // cilium // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043025 // neuronal cell body // not recorded /// 0045121 // membrane raft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // inferred from direct assay /// 0005388 // calcium-transporting ATPase activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // not recorded /// 0005388 // calcium-transporting ATPase activity // inferred from sequence or structural similarity /// 0005388 // calcium-transporting ATPase activity // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // not recorded /// 0005516 // calmodulin binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008022 // protein C-terminus binding // inferred from sequence or structural similarity /// 0015085 // calcium ion transmembrane transporter activity // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0030165 // PDZ domain binding // not recorded /// 0030165 // PDZ domain binding // inferred from sequence or structural similarity /// 0030165 // PDZ domain binding // inferred from electronic annotation /// 0030899 // calcium-dependent ATPase activity // not recorded /// 0035254 // glutamate receptor binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1368699_at NM_133587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133587.1 /DB_XREF=gi:19424285 /GEN=Dscam /FEA=FLmRNA /CNT=7 /TID=Rn.46108.1 /TIER=FL /STK=3 /UG=Rn.46108 /DEF=Rattus norvegicus Down syndrome cell adhesion molecule (Dscam), mRNA. /PROD=Down syndrome cell adhesion molecule /FL=gb:NM_133587.1 gb:AF334385.1 NM_133587 Down syndrome cell adhesion molecule /// Down syndrome cell adhesion molecule-like Dscam /// LOC100360483 100360483 /// 171119 NM_133587 /// XM_002727878 0007155 // cell adhesion // inferred from electronic annotation /// 0007162 // negative regulation of cell adhesion // not recorded /// 0007162 // negative regulation of cell adhesion // inferred from sequence or structural similarity /// 0007162 // negative regulation of cell adhesion // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0042327 // positive regulation of phosphorylation // not recorded /// 0042327 // positive regulation of phosphorylation // inferred from sequence or structural similarity /// 0042327 // positive regulation of phosphorylation // inferred from electronic annotation /// 0048813 // dendrite morphogenesis // inferred from electronic annotation /// 0048813 // dendrite morphogenesis // not recorded /// 0048842 // positive regulation of axon extension involved in axon guidance // inferred from mutant phenotype /// 0048842 // positive regulation of axon extension involved in axon guidance // not recorded /// 0048842 // positive regulation of axon extension involved in axon guidance // inferred from electronic annotation /// 0060060 // post-embryonic retina morphogenesis in camera-type eye // inferred from electronic annotation /// 0060060 // post-embryonic retina morphogenesis in camera-type eye // not recorded /// 0070593 // dendrite self-avoidance // not recorded /// 0070593 // dendrite self-avoidance // inferred from sequence or structural similarity /// 0070593 // dendrite self-avoidance // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from sequence or structural similarity /// 0030424 // axon // inferred from electronic annotation /// 0030426 // growth cone // not recorded /// 0030426 // growth cone // inferred from sequence or structural similarity /// 0030426 // growth cone // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368700_at NM_053456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053456.1 /DB_XREF=gi:16758195 /GEN=LOC84587 /FEA=FLmRNA /CNT=7 /TID=Rn.10684.1 /TIER=FL /STK=3 /UG=Rn.10684 /LL=84587 /DEF=Rattus norvegicus 130kDa-Ins(1,4,5)P3 binding protein (LOC84587), mRNA. /PROD=130kDa-Ins(1,4,5)P3 binding protein /FL=gb:D45920.1 gb:NM_053456.1 NM_053456 phospholipase C-like 1 Plcl1 84587 NM_053456 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007610 // behavior // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004435 // phosphoinositide phospholipase C activity // inferred from electronic annotation /// 0004629 // phospholipase C activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation 1368701_at NM_012506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012506.1 /DB_XREF=gi:6978546 /GEN=Atp1a3 /FEA=FLmRNA /CNT=7 /TID=Rn.10312.1 /TIER=FL /STK=3 /UG=Rn.10312 /LL=24213 /DEF=Rattus norvegicus ATPase, Na+K+ transporting, alpha 3 subunit (Atp1a3), mRNA. /PROD=ATPase, Na+K+ transporting, alpha 3 subunit /FL=gb:NM_012506.1 gb:M14513.1 NM_012506 ATPase, Na+/K+ transporting, alpha 3 polypeptide Atp1a3 24213 NM_012506 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from direct assay /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0007613 // memory // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0008542 // visual learning // not recorded /// 0015672 // monovalent inorganic cation transport // inferred from electronic annotation /// 0015991 // ATP hydrolysis coupled proton transport // traceable author statement /// 0035235 // ionotropic glutamate receptor signaling pathway // not recorded /// 0042493 // response to drug // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // traceable author statement /// 0005890 // sodium:potassium-exchanging ATPase complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0043209 // myelin sheath // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005391 // sodium:potassium-exchanging ATPase activity // not recorded /// 0005391 // sodium:potassium-exchanging ATPase activity // inferred from sequence or structural similarity /// 0005391 // sodium:potassium-exchanging ATPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // traceable author statement /// 0015077 // monovalent inorganic cation transmembrane transporter activity // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0019829 // cation-transporting ATPase activity // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 1368702_at U05989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U05989.1 /DB_XREF=gi:456281 /FEA=FLmRNA /CNT=7 /TID=Rn.9127.1 /TIER=FL /STK=3 /UG=Rn.9127 /LL=64513 /UG_GENE=Pawr /DEF=Rattus norvegicus clone par-4 induced by effectors of apoptosis mRNA, complete cds. /PROD=induced by effectors of apoptosis /FL=gb:U05989.1 gb:NM_033485.1 U05989 PRKC, apoptosis, WT1, regulator Pawr 64513 NM_033485 0006350 // transcription // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0030889 // negative regulation of B cell proliferation // inferred from electronic annotation /// 0030889 // negative regulation of B cell proliferation // not recorded /// 0042094 // interleukin-2 biosynthetic process // inferred from electronic annotation /// 0042094 // interleukin-2 biosynthetic process // not recorded /// 0042130 // negative regulation of T cell proliferation // inferred from electronic annotation /// 0042130 // negative regulation of T cell proliferation // not recorded /// 0042986 // positive regulation of amyloid precursor protein biosynthetic process // inferred from electronic annotation /// 0042986 // positive regulation of amyloid precursor protein biosynthetic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0050860 // negative regulation of T cell receptor signaling pathway // inferred from electronic annotation /// 0050860 // negative regulation of T cell receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0043522 // leucine zipper domain binding // inferred from electronic annotation /// 0043522 // leucine zipper domain binding // not recorded 1368703_at NM_053326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053326.1 /DB_XREF=gi:16758027 /GEN=Enh /FEA=FLmRNA /CNT=7 /TID=Rn.17933.1 /TIER=FL /STK=3 /UG=Rn.17933 /LL=64353 /DEF=Rattus norvegicus enigma homolog (Enh), mRNA. /PROD=enigma homolog /FL=gb:U48247.1 gb:NM_053326.1 NM_053326 PDZ and LIM domain 5 Pdlim5 64353 NM_053326 0007507 // heart development // non-traceable author statement /// 0051963 // regulation of synaptogenesis // inferred from direct assay /// 0061001 // regulation of dendritic spine morphogenesis // inferred from direct assay 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0030018 // Z disc // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0003779 // actin binding // inferred from direct assay /// 0005080 // protein kinase C binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030159 // receptor signaling complex scaffold activity // non-traceable author statement /// 0042805 // actinin binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from mutant phenotype 1368704_a_at AF292102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF292102.1 /DB_XREF=gi:11093920 /GEN=Caleb /FEA=FLmRNA /CNT=2 /TID=Rn.10146.2 /TIER=FL /STK=1 /UG=Rn.10146 /LL=50568 /DEF=Rattus norvegicus CALEB isoform b (Caleb) mRNA, complete cds. /PROD=CALEB isoform b /FL=gb:AF292102.1 AF292102 chondroitin sulfate proteoglycan 5 Cspg5 50568 NM_019284 /// NM_133652 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031103 // axon regeneration // inferred from expression pattern /// 0040008 // regulation of growth // inferred from electronic annotation /// 0050804 // regulation of synaptic transmission // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030660 // Golgi-associated vesicle membrane // not recorded /// 0030660 // Golgi-associated vesicle membrane // inferred from sequence or structural similarity 0005515 // protein binding // not recorded 1368705_at AF115249 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF115249.1 /DB_XREF=gi:6531394 /FEA=FLmRNA /CNT=6 /TID=Rn.45601.1 /TIER=FL /STK=3 /UG=Rn.45601 /LL=60399 /UG_GENE=Edg8 /DEF=Rattus norvegicus growth factor-regulated G protein-coupled receptor Nrg-1 mRNA, complete cds. /PROD=growth factor-regulated G protein-coupledreceptor Nrg-1 /FL=gb:AF233649.1 gb:NM_021775.1 gb:AF115249.1 AF115249 sphingosine-1-phosphate receptor 5 S1pr5 60399 NM_021775 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0045664 // regulation of neuron differentiation // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0001619 // lysosphingolipid and lysophosphatidic acid receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from direct assay /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1368706_at NM_053785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053785.1 /DB_XREF=gi:16758625 /GEN=Tm4sf4 /FEA=FLmRNA /CNT=6 /TID=Rn.13425.1 /TIER=FL /STK=3 /UG=Rn.13425 /LL=116467 /DEF=Rattus norvegicus transmembrane 4 superfamily member 4 (Tm4sf4), mRNA. /PROD=transmembrane 4 superfamily member 4 /FL=gb:AF205717.1 gb:NM_053785.1 NM_053785 transmembrane 4 L six family member 4 Tm4sf4 116467 NM_053785 0042246 // tissue regeneration // inferred from expression pattern 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1368707_at NM_019369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019369.1 /DB_XREF=gi:9506818 /GEN=Itih4 /FEA=FLmRNA /CNT=5 /TID=Rn.11308.1 /TIER=FL /STK=3 /UG=Rn.11308 /LL=54404 /DEF=Rattus norvegicus inter-alpha-inhibitor H4 heavy chain (Itih4), mRNA. /PROD=inter-alpha-inhibitor H4 heavy chain /FL=gb:NM_019369.1 NM_019369 inter alpha-trypsin inhibitor, heavy chain 4 Itih4 54404 NM_019369 0030212 // hyaluronan metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005540 // hyaluronic acid binding // not recorded 1368708_a_at NM_012547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012547.1 /DB_XREF=gi:6978776 /GEN=Drd2 /FEA=FLmRNA /CNT=5 /TID=Rn.37443.1 /TIER=FL /STK=3 /UG=Rn.37443 /LL=24318 /DEF=Rattus norvegicus Dopamine receptor D2 (Drd2), mRNA. /PROD=dopamine receptor D2 /FL=gb:NM_012547.1 NM_012547 dopamine receptor D2 Drd2 24318 NM_012547 0001659 // temperature homeostasis // inferred from electronic annotation /// 0001659 // temperature homeostasis // not recorded /// 0001666 // response to hypoxia // inferred from mutant phenotype /// 0001963 // synaptic transmission, dopaminergic // inferred from direct assay /// 0001963 // synaptic transmission, dopaminergic // inferred from mutant phenotype /// 0001964 // startle response // not recorded /// 0001964 // startle response // inferred from electronic annotation /// 0001975 // response to amphetamine // inferred from expression pattern /// 0001975 // response to amphetamine // not recorded /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0001976 // neurological system process involved in regulation of systemic arterial blood pressure // inferred from electronic annotation /// 0001976 // neurological system process involved in regulation of systemic arterial blood pressure // not recorded /// 0002027 // regulation of heart rate // inferred from electronic annotation /// 0002027 // regulation of heart rate // not recorded /// 0002028 // regulation of sodium ion transport // inferred from electronic annotation /// 0002028 // regulation of sodium ion transport // not recorded /// 0002031 // G-protein coupled receptor internalization // inferred from direct assay /// 0002052 // positive regulation of neuroblast proliferation // inferred from electronic annotation /// 0002052 // positive regulation of neuroblast proliferation // not recorded /// 0002092 // positive regulation of receptor internalization // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from direct assay /// 0007194 // negative regulation of adenylate cyclase activity // inferred from direct assay /// 0007194 // negative regulation of adenylate cyclase activity // not recorded /// 0007195 // inhibition of adenylate cyclase activity by dopamine receptor signaling pathway // inferred from direct assay /// 0007195 // inhibition of adenylate cyclase activity by dopamine receptor signaling pathway // not recorded /// 0007195 // inhibition of adenylate cyclase activity by dopamine receptor signaling pathway // inferred from electronic annotation /// 0007212 // dopamine receptor signaling pathway // inferred from direct assay /// 0007212 // dopamine receptor signaling pathway // inferred from mutant phenotype /// 0007212 // dopamine receptor signaling pathway // not recorded /// 0007212 // dopamine receptor signaling pathway // traceable author statement /// 0007212 // dopamine receptor signaling pathway // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0007270 // nerve-nerve synaptic transmission // not recorded /// 0007270 // nerve-nerve synaptic transmission // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007416 // synapse assembly // inferred from expression pattern /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0007608 // sensory perception of smell // not recorded /// 0007616 // long-term memory // inferred from mutant phenotype /// 0007625 // grooming behavior // inferred from electronic annotation /// 0007625 // grooming behavior // not recorded /// 0007626 // locomotory behavior // inferred from mutant phenotype /// 0007626 // locomotory behavior // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007628 // adult walking behavior // inferred from electronic annotation /// 0007628 // adult walking behavior // not recorded /// 0007631 // feeding behavior // inferred from electronic annotation /// 0007631 // feeding behavior // not recorded /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008306 // associative learning // not recorded /// 0008306 // associative learning // inferred from electronic annotation /// 0008542 // visual learning // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0009416 // response to light stimulus // inferred from electronic annotation /// 0009416 // response to light stimulus // not recorded /// 0009636 // response to toxin // inferred from expression pattern /// 0010039 // response to iron ion // inferred from expression pattern /// 0014059 // regulation of dopamine secretion // inferred from electronic annotation /// 0014059 // regulation of dopamine secretion // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from direct assay /// 0021853 // cerebral cortex GABAergic interneuron migration // inferred from electronic annotation /// 0021853 // cerebral cortex GABAergic interneuron migration // not recorded /// 0021984 // adenohypophysis development // inferred from electronic annotation /// 0021984 // adenohypophysis development // not recorded /// 0030007 // cellular potassium ion homeostasis // inferred by curator /// 0030146 // diuresis // inferred from electronic annotation /// 0030146 // diuresis // not recorded /// 0030147 // natriuresis // inferred from electronic annotation /// 0030147 // natriuresis // not recorded /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // not recorded /// 0030384 // phosphoinositide metabolic process // inferred from direct assay /// 0030432 // peristalsis // inferred from electronic annotation /// 0030432 // peristalsis // not recorded /// 0030534 // adult behavior // not recorded /// 0030534 // adult behavior // inferred from electronic annotation /// 0030814 // regulation of cAMP metabolic process // not recorded /// 0030900 // forebrain development // inferred from mutant phenotype /// 0031223 // auditory behavior // inferred from mutant phenotype /// 0032147 // activation of protein kinase activity // inferred from direct assay /// 0032228 // regulation of synaptic transmission, GABAergic // inferred from electronic annotation /// 0032228 // regulation of synaptic transmission, GABAergic // not recorded /// 0032922 // circadian regulation of gene expression // inferred from electronic annotation /// 0032922 // circadian regulation of gene expression // not recorded /// 0034776 // response to histamine // not recorded /// 0035094 // response to nicotine // inferred from expression pattern /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0042220 // response to cocaine // not recorded /// 0042220 // response to cocaine // inferred from electronic annotation /// 0042321 // negative regulation of circadian sleep/wake cycle, sleep // inferred from direct assay /// 0042417 // dopamine metabolic process // inferred from electronic annotation /// 0042417 // dopamine metabolic process // not recorded /// 0042493 // response to drug // inferred from direct assay /// 0042493 // response to drug // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0043266 // regulation of potassium ion transport // inferred from direct assay /// 0043266 // regulation of potassium ion transport // not recorded /// 0043266 // regulation of potassium ion transport // inferred from electronic annotation /// 0043278 // response to morphine // inferred from electronic annotation /// 0043278 // response to morphine // not recorded /// 0043408 // regulation of MAPKKK cascade // inferred from direct assay /// 0043473 // pigmentation // inferred from electronic annotation /// 0043473 // pigmentation // not recorded /// 0043666 // regulation of phosphoprotein phosphatase activity // inferred from mutant phenotype /// 0045471 // response to ethanol // inferred from expression pattern /// 0045745 // positive regulation of G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0045776 // negative regulation of blood pressure // inferred from electronic annotation /// 0045776 // negative regulation of blood pressure // not recorded /// 0045840 // positive regulation of mitosis // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046676 // negative regulation of insulin secretion // inferred from mutant phenotype /// 0046717 // acid secretion // inferred from direct assay /// 0048148 // behavioral response to cocaine // inferred from electronic annotation /// 0048148 // behavioral response to cocaine // not recorded /// 0048149 // behavioral response to ethanol // inferred from electronic annotation /// 0048149 // behavioral response to ethanol // not recorded /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // not recorded /// 0048678 // response to axon injury // inferred from expression pattern /// 0048755 // branching morphogenesis of a nerve // inferred from electronic annotation /// 0048755 // branching morphogenesis of a nerve // not recorded /// 0050482 // arachidonic acid secretion // not recorded /// 0050709 // negative regulation of protein secretion // not recorded /// 0050804 // regulation of synaptic transmission // inferred from direct assay /// 0050804 // regulation of synaptic transmission // not recorded /// 0050804 // regulation of synaptic transmission // inferred from electronic annotation /// 0051209 // release of sequestered calcium ion into cytosol // inferred from mutant phenotype /// 0051481 // reduction of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // not recorded /// 0051584 // regulation of dopamine uptake // not recorded /// 0051584 // regulation of dopamine uptake // inferred from electronic annotation /// 0051586 // positive regulation of dopamine uptake // inferred from electronic annotation /// 0051586 // positive regulation of dopamine uptake // not recorded /// 0051898 // negative regulation of protein kinase B signaling cascade // inferred from electronic annotation /// 0051898 // negative regulation of protein kinase B signaling cascade // not recorded /// 0051927 // negative regulation of calcium ion transport via voltage-gated calcium channel activity // inferred from direct assay /// 0051927 // negative regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0051967 // negative regulation of synaptic transmission, glutamatergic // inferred from electronic annotation /// 0051967 // negative regulation of synaptic transmission, glutamatergic // not recorded /// 0060124 // positive regulation of growth hormone secretion // inferred from electronic annotation /// 0060124 // positive regulation of growth hormone secretion // not recorded /// 0060134 // prepulse inhibition // inferred from electronic annotation /// 0060134 // prepulse inhibition // not recorded /// 0060158 // activation of phospholipase C activity by dopamine receptor signaling pathway // inferred from electronic annotation /// 0060158 // activation of phospholipase C activity by dopamine receptor signaling pathway // not recorded /// 0060160 // negative regulation of dopamine receptor signaling pathway // inferred from electronic annotation /// 0060160 // negative regulation of dopamine receptor signaling pathway // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from mutant phenotype 0001669 // acrosomal vesicle // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // inferred from mutant phenotype /// 0019861 // flagellum // inferred from direct assay /// 0030139 // endocytic vesicle // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0030425 // dendrite // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay 0001591 // dopamine receptor activity, coupled via Gi/Go // inferred from direct assay /// 0001591 // dopamine receptor activity, coupled via Gi/Go // not recorded /// 0001591 // dopamine receptor activity, coupled via Gi/Go // inferred from electronic annotation /// 0001670 // dopamine D2 receptor activity // inferred from direct assay /// 0001670 // dopamine D2 receptor activity // not recorded /// 0001670 // dopamine D2 receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // not recorded /// 0004952 // dopamine receptor activity // inferred from electronic annotation /// 0004952 // dopamine receptor activity // inferred from mutant phenotype /// 0004952 // dopamine receptor activity // not recorded /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement /// 0008144 // drug binding // inferred from direct assay /// 0008144 // drug binding // not recorded /// 0035240 // dopamine binding // inferred from mutant phenotype /// 0035240 // dopamine binding // not recorded /// 0035240 // dopamine binding // inferred from electronic annotation /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction 1368709_at NM_031236 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031236.1 /DB_XREF=gi:13676840 /GEN=Fut1 /FEA=FLmRNA /CNT=5 /TID=Rn.11382.1 /TIER=FL /STK=3 /UG=Rn.11382 /LL=81919 /DEF=Rattus norvegicus Alpha1,2-fucosyltransferase a (Fut1), mRNA. /PROD=alpha 1,2-fucosyltransferase /FL=gb:NM_031236.1 gb:AB006137.1 NM_031236 fucosyltransferase 1 Fut1 81919 NM_031236 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0008107 // galactoside 2-alpha-L-fucosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1368710_at NM_021699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021699.1 /DB_XREF=gi:11067436 /GEN=LOC60328 /FEA=FLmRNA /CNT=5 /TID=Rn.42926.1 /TIER=FL /STK=3 /UG=Rn.42926 /LL=60328 /DEF=Rattus norvegicus serinethreonine kinase (LOC60328), mRNA. /PROD=serinethreonine kinase /FL=gb:NM_021699.1 NM_021699 MAP/microtubule affinity-regulating kinase 2 Mark2 60328 NM_021699 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006979 // response to oxidative stress // not recorded /// 0007243 // intracellular protein kinase cascade // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from sequence or structural similarity /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045197 // establishment or maintenance of epithelial cell apical/basal polarity // not recorded /// 0045197 // establishment or maintenance of epithelial cell apical/basal polarity // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0045180 // basal cortex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from mutant phenotype /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368711_at NM_012743 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012743.1 /DB_XREF=gi:6981035 /GEN=Hnf3b /FEA=FLmRNA /CNT=5 /TID=Rn.10948.1 /TIER=FL /STK=3 /UG=Rn.10948 /LL=25099 /DEF=Rattus norvegicus Hepatocyte nuclear factor 3 beta (Hnf3b), mRNA. /PROD=hepatocyte nuclear factor 3 beta /FL=gb:L09647.1 gb:NM_012743.1 NM_012743 forkhead box A2 Foxa2 25099 NM_012743 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001705 // ectoderm formation // inferred from electronic annotation /// 0001705 // ectoderm formation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007596 // blood coagulation // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // not recorded /// 0009653 // anatomical structure morphogenesis // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0021533 // cell differentiation in hindbrain // inferred from electronic annotation /// 0021533 // cell differentiation in hindbrain // not recorded /// 0021904 // dorsal/ventral neural tube patterning // inferred from electronic annotation /// 0021904 // dorsal/ventral neural tube patterning // not recorded /// 0030193 // regulation of blood coagulation // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0031018 // endocrine pancreas development // inferred from electronic annotation /// 0031018 // endocrine pancreas development // not recorded /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045945 // positive regulation of transcription from RNA polymerase III promoter // inferred from electronic annotation /// 0045945 // positive regulation of transcription from RNA polymerase III promoter // not recorded /// 0048468 // cell development // inferred from electronic annotation /// 0048468 // cell development // not recorded /// 0048646 // anatomical structure formation involved in morphogenesis // inferred from electronic annotation /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded /// 0048665 // neuron fate specification // inferred from electronic annotation /// 0048665 // neuron fate specification // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // inferred from electronic annotation /// 0060441 // epithelial tube branching involved in lung morphogenesis // not recorded /// 0060487 // lung epithelial cell differentiation // inferred from electronic annotation /// 0060487 // lung epithelial cell differentiation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0044464 // cell part // inferred from electronic annotation /// 0044464 // cell part // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from direct assay /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1368712_at NM_019620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019620.1 /DB_XREF=gi:9665237 /GEN=Kzf1 /FEA=FLmRNA /CNT=5 /TID=Rn.10663.1 /TIER=FL /STK=3 /UG=Rn.10663 /LL=25165 /DEF=Rattus norvegicus Kruppel associated box (KRAB) zinc finger 1 (Kzf1), mRNA. /PROD=Kruppel associated box (KRAB) zinc finger 1 /FL=gb:NM_019620.1 gb:U67082.1 NM_019620 zinc finger protein 386 (Kruppel-like) Zfp386 25165 NM_019620 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1368713_at NM_133514 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133514.1 /DB_XREF=gi:19424153 /GEN=Mmp10 /FEA=FLmRNA /CNT=5 /TID=Rn.9946.1 /TIER=FL /STK=3 /UG=Rn.9946 /LL=117061 /DEF=Rattus norvegicus matrix metalloproteinase 10 (Mmp10), mRNA. /PROD=matrix metalloproteinase 10 /FL=gb:NM_133514.1 gb:M65253.1 NM_133514 matrix metallopeptidase 10 Mmp10 117061 NM_133514 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0030574 // collagen catabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368714_at NM_022846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022846.1 /DB_XREF=gi:12408287 /GEN=Dprp /FEA=FLmRNA /CNT=5 /TID=Rn.10114.1 /TIER=FL /STK=3 /UG=Rn.10114 /LL=24315 /DEF=Rattus norvegicus Decidual prolactin-related protein (Dprp), mRNA. /PROD=decidual prolactin-related protein /FL=gb:NM_022846.1 gb:L06441.1 NM_022846 prolactin family 8, subfamily a, member 2 Prl8a2 24315 NM_022846 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from expression pattern /// 0060135 // maternal process involved in female pregnancy // not recorded /// 0060135 // maternal process involved in female pregnancy // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation 1368715_s_at NM_022846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022846.1 /DB_XREF=gi:12408287 /GEN=Dprp /FEA=FLmRNA /CNT=5 /TID=Rn.10114.1 /TIER=FL /STK=3 /UG=Rn.10114 /LL=24315 /DEF=Rattus norvegicus Decidual prolactin-related protein (Dprp), mRNA. /PROD=decidual prolactin-related protein /FL=gb:NM_022846.1 gb:L06441.1 NM_022846 prolactin family 8, subfamily a, member 2 Prl8a2 24315 NM_022846 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from expression pattern /// 0060135 // maternal process involved in female pregnancy // not recorded /// 0060135 // maternal process involved in female pregnancy // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation 1368716_at NM_133425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133425.1 /DB_XREF=gi:19173801 /GEN=Ppp1r14c /FEA=FLmRNA /CNT=5 /TID=Rn.35234.1 /TIER=FL /STK=3 /UG=Rn.35234 /DEF=Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 14C (Ppp1r14c), mRNA. /PROD=protein phosphatase 1, regulatory (inhibitor)subunit 14C /FL=gb:NM_133425.1 gb:AF407168.1 NM_133425 protein phosphatase 1, regulatory (inhibitor) subunit 14c Ppp1r14c 171010 NM_133425 0042325 // regulation of phosphorylation // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from electronic annotation /// 0004865 // protein serine/threonine phosphatase inhibitor activity // inferred from direct assay /// 0004865 // protein serine/threonine phosphatase inhibitor activity // not recorded /// 0004865 // protein serine/threonine phosphatase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1368717_at NM_024132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024132.1 /DB_XREF=gi:13162303 /GEN=Faah /FEA=FLmRNA /CNT=4 /TID=Rn.10619.1 /TIER=FL /STK=3 /UG=Rn.10619 /LL=29347 /DEF=Rattus norvegicus fatty acid amide hydrolase (Faah), mRNA. /PROD=fatty acid amide hydrolase /FL=gb:NM_024132.1 gb:U72497.1 NM_024132 fatty acid amide hydrolase Faah 29347 NM_024132 0006631 // fatty acid metabolic process // inferred from mutant phenotype /// 0006631 // fatty acid metabolic process // traceable author statement /// 0009062 // fatty acid catabolic process // inferred from direct assay /// 0009062 // fatty acid catabolic process // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred by curator /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from direct assay 0004040 // amidase activity // inferred from direct assay /// 0005543 // phospholipid binding // inferred from mutant phenotype /// 0008289 // lipid binding // inferred from direct assay /// 0008289 // lipid binding // inferred from mutant phenotype /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from direct assay /// 0016884 // carbon-nitrogen ligase activity, with glutamine as amido-N-donor // inferred from electronic annotation /// 0017064 // fatty acid amide hydrolase activity // inferred from direct assay /// 0017064 // fatty acid amide hydrolase activity // inferred from mutant phenotype /// 0017064 // fatty acid amide hydrolase activity // not recorded /// 0017064 // fatty acid amide hydrolase activity // traceable author statement /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from mutant phenotype 1368718_at M23995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M23995.1 /DB_XREF=gi:202845 /FEA=FLmRNA /CNT=4 /TID=Rn.74044.1 /TIER=FL /STK=3 /UG=Rn.74044 /LL=29651 /UG_GENE=Aldh1a4 /UG_TITLE=aldehyde dehydrogenase family 1, subfamily A4 /DEF=Rat aldehyde dehydrogenase mRNA, complete cds. /FL=gb:NM_017272.14 gb:M23995.1 M23995 aldehyde dehydrogenase family 1, subfamily A7 Aldh1a7 29651 NM_017272 0008152 // metabolic process // inferred from electronic annotation /// 0035106 // operant conditioning // inferred from expression pattern /// 0042573 // retinoic acid metabolic process // not recorded /// 0051289 // protein homotetramerization // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // non-traceable author statement 0004028 // 3-chloroallyl aldehyde dehydrogenase activity // inferred from direct assay /// 0004028 // 3-chloroallyl aldehyde dehydrogenase activity // traceable author statement /// 0004029 // aldehyde dehydrogenase (NAD) activity // inferred from direct assay /// 0004029 // aldehyde dehydrogenase (NAD) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0018479 // benzaldehyde dehydrogenase (NAD+) activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from direct assay 1368719_at NM_019333 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019333.1 /DB_XREF=gi:9506968 /GEN=Pfkfb4 /FEA=FLmRNA /CNT=4 /TID=Rn.10925.1 /TIER=FL /STK=3 /UG=Rn.10925 /LL=54283 /DEF=Rattus norvegicus 6-phosphofructo-2-kinasefructose-2,6-biphosphatase 4 (Pfkfb4), mRNA. /PROD=6-phosphofructo-2-kinasefructose-2,6-biphosphatase 4 /FL=gb:NM_019333.1 gb:M64797.1 NM_019333 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 Pfkfb4 54283 NM_019333 0006000 // fructose metabolic process // inferred from electronic annotation /// 0006003 // fructose 2,6-bisphosphate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003873 // 6-phosphofructo-2-kinase activity // inferred from direct assay /// 0003873 // 6-phosphofructo-2-kinase activity // inferred from electronic annotation /// 0004331 // fructose-2,6-bisphosphate 2-phosphatase activity // inferred from direct assay /// 0004331 // fructose-2,6-bisphosphate 2-phosphatase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction 1368720_at NM_022403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022403.1 /DB_XREF=gi:11693135 /GEN=Tdo2 /FEA=FLmRNA /CNT=4 /TID=Rn.1029.1 /TIER=FL /STK=3 /UG=Rn.1029 /LL=64206 /DEF=Rattus norvegicus tryptophan-2,3-dioxygenase (Tdo2), mRNA. /PROD=tryptophan-2,3-dioxygenase /FL=gb:NM_022403.1 gb:M55167.1 NM_022403 tryptophan 2,3-dioxygenase Tdo2 64206 NM_022403 0006568 // tryptophan metabolic process // inferred from direct assay /// 0006569 // tryptophan catabolic process // inferred from electronic annotation /// 0019441 // tryptophan catabolic process to kynurenine // inferred from electronic annotation /// 0019442 // tryptophan catabolic process to acetyl-CoA // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005829 // cytosol // not recorded 0004833 // tryptophan 2,3-dioxygenase activity // inferred from direct assay /// 0004833 // tryptophan 2,3-dioxygenase activity // not recorded /// 0004833 // tryptophan 2,3-dioxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from direct assay /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0019825 // oxygen binding // inferred from direct assay /// 0020037 // heme binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1368721_at NM_031503 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031503.1 /DB_XREF=gi:13928685 /GEN=Ascl2 /FEA=FLmRNA /CNT=4 /TID=Rn.10486.1 /TIER=FL /STK=3 /UG=Rn.10486 /LL=24209 /DEF=Rattus norvegicus Achaete-scute homolog 2 (Ascl2), mRNA. /PROD=achaete-scute homolog 2 /FL=gb:NM_031503.1 NM_031503 achaete-scute complex homolog 2 (Drosophila) Ascl2 24209 NM_031503 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010626 // negative regulation of Schwann cell proliferation // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0035019 // somatic stem cell maintenance // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0060708 // spongiotrophoblast differentiation // inferred from electronic annotation /// 0060708 // spongiotrophoblast differentiation // not recorded /// 0060712 // spongiotrophoblast layer development // not recorded /// 0060712 // spongiotrophoblast layer development // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0070888 // E-box binding // inferred from electronic annotation /// 0070888 // E-box binding // not recorded 1368722_at NM_080769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080769.1 /DB_XREF=gi:18158436 /GEN=Lta /FEA=FLmRNA /CNT=4 /TID=Rn.9820.1 /TIER=FL /STK=3 /UG=Rn.9820 /DEF=Rattus norvegicus Lymphotoxin alpha (formerly tumor necrosis factor, beta) (Lta), mRNA. /PROD=lymphotoxin alpha (formerly tumor necrosisfactor, beta) /FL=gb:NM_080769.1 NM_080769 lymphotoxin alpha (TNF superfamily, member 1) Lta 25008 NM_080769 0001666 // response to hypoxia // inferred from expression pattern /// 0002876 // positive regulation of chronic inflammatory response to antigenic stimulus // inferred from electronic annotation /// 0002876 // positive regulation of chronic inflammatory response to antigenic stimulus // not recorded /// 0002925 // positive regulation of humoral immune response mediated by circulating immunoglobulin // inferred from electronic annotation /// 0002925 // positive regulation of humoral immune response mediated by circulating immunoglobulin // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0006959 // humoral immune response // inferred from electronic annotation /// 0006959 // humoral immune response // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032729 // positive regulation of interferon-gamma production // inferred from electronic annotation /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0044130 // negative regulation of growth of symbiont in host // inferred from electronic annotation /// 0044130 // negative regulation of growth of symbiont in host // not recorded /// 0048147 // negative regulation of fibroblast proliferation // inferred from direct assay /// 0048535 // lymph node development // inferred from electronic annotation /// 0048535 // lymph node development // not recorded /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368723_at NM_030853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030853.1 /DB_XREF=gi:13540668 /GEN=Lat /FEA=FLmRNA /CNT=4 /TID=Rn.9773.1 /TIER=FL /STK=3 /UG=Rn.9773 /LL=81511 /DEF=Rattus norvegicus linker for activation of T cells (Lat), mRNA. /PROD=linker for activation of T cells /FL=gb:NM_030853.1 NM_030853 linker for activation of T cells Lat 81511 NM_030853 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0006955 // immune response // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0010467 // gene expression // inferred from electronic annotation /// 0010467 // gene expression // not recorded /// 0019722 // calcium-mediated signaling // not recorded /// 0023034 // intracellular signaling pathway // not recorded /// 0043303 // mast cell degranulation // inferred from electronic annotation /// 0050863 // regulation of T cell activation // not recorded 0001772 // immunological synapse // inferred from electronic annotation /// 0001772 // immunological synapse // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0005070 // SH3/SH2 adaptor activity // not recorded /// 0005515 // protein binding // not recorded 1368724_a_at NM_019131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019131.1 /DB_XREF=gi:14192924 /GEN=Tpm1 /FEA=FLmRNA /CNT=4 /TID=Rn.1033.1 /TIER=FL /STK=3 /UG=Rn.1033 /LL=24851 /DEF=Rattus norvegicus Tropomyosin 1 (alpha) (Tpm1), mRNA. /PROD=tropomyosin 1 (alpha) /FL=gb:NM_019131.1 gb:M34134.1 NM_019131 tropomyosin 1, alpha Tpm1 24851 NM_001034068 /// NM_001034069 /// NM_001034070 /// NM_001034071 /// NM_001034072 /// NM_001034073 /// NM_001034074 /// NM_001034075 /// NM_019131 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006936 // muscle contraction // traceable author statement /// 0009790 // embryo development // inferred from electronic annotation /// 0030049 // muscle filament sliding // inferred from direct assay /// 0030336 // negative regulation of cell migration // inferred from genetic interaction /// 0031529 // ruffle organization // inferred from genetic interaction /// 0032781 // positive regulation of ATPase activity // inferred from mutant phenotype /// 0032781 // positive regulation of ATPase activity // inferred from direct assay /// 0042060 // wound healing // inferred from genetic interaction /// 0045785 // positive regulation of cell adhesion // inferred from genetic interaction /// 0051496 // positive regulation of stress fiber assembly // inferred from genetic interaction /// 0051693 // actin filament capping // inferred from direct assay /// 0060048 // cardiac muscle contraction // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030016 // myofibril // inferred from electronic annotation /// 0030018 // Z disc // inferred from mutant phenotype /// 0031941 // filamentous actin // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003779 // actin binding // inferred from mutant phenotype /// 0003779 // actin binding // traceable author statement /// 0003779 // actin binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from direct assay /// 0051015 // actin filament binding // inferred from mutant phenotype 1368725_at NM_019147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019147.1 /DB_XREF=gi:9506824 /GEN=Jag1 /FEA=FLmRNA /CNT=4 /TID=Rn.11254.1 /TIER=FL /STK=3 /UG=Rn.11254 /LL=29146 /DEF=Rattus norvegicus jagged 1 (Jag1), mRNA. /PROD=jagged 1 /FL=gb:NM_019147.1 gb:L38483.1 NM_019147 jagged 1 Jag1 29146 NM_019147 0001709 // cell fate determination // non-traceable author statement /// 0002011 // morphogenesis of an epithelial sheet // inferred from electronic annotation /// 0002011 // morphogenesis of an epithelial sheet // not recorded /// 0007154 // cell communication // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from mutant phenotype /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0030154 // cell differentiation // non-traceable author statement /// 0042127 // regulation of cell proliferation // inferred from mutant phenotype /// 0042491 // auditory receptor cell differentiation // inferred from mutant phenotype /// 0042491 // auditory receptor cell differentiation // not recorded /// 0042491 // auditory receptor cell differentiation // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // inferred from direct assay /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045639 // positive regulation of myeloid cell differentiation // inferred from electronic annotation /// 0045639 // positive regulation of myeloid cell differentiation // not recorded /// 0045747 // positive regulation of Notch signaling pathway // inferred from electronic annotation /// 0045747 // positive regulation of Notch signaling pathway // not recorded /// 0048839 // inner ear development // inferred from electronic annotation /// 0048839 // inner ear development // not recorded 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005112 // Notch binding // not recorded /// 0005112 // Notch binding // traceable author statement /// 0005112 // Notch binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368726_a_at AB047638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB047638.1 /DB_XREF=gi:15284006 /GEN=GIOT2 beta /FEA=FLmRNA /CNT=1 /TID=Rn.77686.2 /TIER=FL /STK=1 /UG=Rn.77686 /DEF=Rattus norvegicus GIOT2 beta mRNA for gonadotropin inducible ovarian transcription factor 2 beta, complete cds. /PROD=gonadotropin inducible ovarian transcriptionfactor 2 beta /FL=gb:AB047638.1 AB047638 zinc finger protein 347 Zfp347 170902 NM_133390 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1368727_at NM_053929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053929.1 /DB_XREF=gi:16758811 /GEN=Slc7a9 /FEA=FLmRNA /CNT=4 /TID=Rn.32225.1 /TIER=FL /STK=3 /UG=Rn.32225 /LL=116726 /DEF=Rattus norvegicus solute carrier family 7 (cationic amino acid transporter, y+ system), member 9 (Slc7a9), mRNA. /PROD=solute carrier family 7 (cationic amino acidtransporter, y+ system), member 9 /FL=gb:AB029559.1 gb:NM_053929.1 NM_053929 solute carrier family 7 (cationic amino acid transporter, y+ system), member 9 Slc7a9 116726 NM_053929 0006810 // transport // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from direct assay /// 0006865 // amino acid transport // not recorded /// 0006865 // amino acid transport // inferred from electronic annotation /// 0015804 // neutral amino acid transport // inferred from sequence or structural similarity /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0015171 // amino acid transmembrane transporter activity // inferred from direct assay /// 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015175 // neutral amino acid transmembrane transporter activity // inferred from sequence or structural similarity /// 0042605 // peptide antigen binding // inferred from sequence or structural similarity 1368728_at NM_022800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022800.1 /DB_XREF=gi:12248186 /GEN=P2y12 /FEA=FLmRNA /CNT=4 /TID=Rn.64592.1 /TIER=FL /STK=3 /UG=Rn.64592 /LL=64803 /DEF=Rattus norvegicus P2Y12 platelet ADP receptor (P2y12), mRNA. /PROD=P2Y12 platelet ADP receptor /FL=gb:AF313450.1 gb:NM_022800.1 NM_022800 purinergic receptor P2Y, G-protein coupled, 12 P2ry12 64803 NM_022800 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from electronic annotation /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // not recorded /// 0007194 // negative regulation of adenylate cyclase activity // non-traceable author statement /// 0030168 // platelet activation // inferred from electronic annotation /// 0030168 // platelet activation // not recorded /// 0043270 // positive regulation of ion transport // inferred from electronic annotation /// 0043270 // positive regulation of ion transport // not recorded /// 0043491 // protein kinase B signaling cascade // inferred from mutant phenotype 0005739 // mitochondrion // inferred from direct assay /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001609 // adenosine receptor activity, G-protein coupled // inferred from electronic annotation /// 0001609 // adenosine receptor activity, G-protein coupled // not recorded /// 0001621 // ADP receptor activity // inferred from direct assay /// 0001621 // ADP receptor activity // not recorded /// 0001621 // ADP receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0045028 // purinergic nucleotide receptor activity, G-protein coupled // inferred from electronic annotation 1368729_a_at Z23279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Z23279.1 /DB_XREF=gi:404252 /FEA=FLmRNA /CNT=1 /TID=Rn.9917.4 /TIER=FL /STK=1 /UG=Rn.9917 /LL=24167 /UG_GENE=Adcyap1r1 /DEF=R.norvegicus PACAP receptor, complete CDS. /PROD=PACAP receptor /FL=gb:Z23279.1 Z23279 adenylate cyclase activating polypeptide 1 receptor 1 Adcyap1r1 24167 NM_133511 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007190 // activation of adenylate cyclase activity // not recorded /// 0007202 // activation of phospholipase C activity // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from mutant phenotype /// 0019933 // cAMP-mediated signaling // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from direct assay /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0033555 // multicellular organismal response to stress // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0046545 // development of primary female sexual characteristics // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0060548 // negative regulation of cell death // inferred from direct assay /// 0060732 // positive regulation of inositol phosphate biosynthetic process // inferred from direct assay 0000139 // Golgi membrane // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0005923 // tight junction // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay 0001634 // pituitary adenylate cyclase-activating polypeptide receptor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004999 // vasoactive intestinal polypeptide receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0008179 // adenylate cyclase binding // inferred from direct assay /// 0042923 // neuropeptide binding // inferred from direct assay 1368730_a_at D16465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D16465.1 /DB_XREF=gi:440381 /FEA=FLmRNA /CNT=11 /TID=Rn.9917.1 /TIER=FL /STK=1 /UG=Rn.9917 /LL=24167 /UG_GENE=Adcyap1r1 /DEF=Rat mRNA for receptor for pituitary adenylate cyclase activating polypeptide (PACAP receptor), complete cds. /PROD=PACAP receptor precursor /FL=gb:L16680.1 gb:D16465.1 gb:Z23275.1 gb:Z23274.1 gb:Z23273.1 gb:NM_133511.1 gb:Z23282.1 gb:D14909.1 D16465 adenylate cyclase activating polypeptide 1 receptor 1 Adcyap1r1 24167 NM_133511 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007190 // activation of adenylate cyclase activity // not recorded /// 0007202 // activation of phospholipase C activity // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from mutant phenotype /// 0019933 // cAMP-mediated signaling // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from direct assay /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0033555 // multicellular organismal response to stress // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0046545 // development of primary female sexual characteristics // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0060548 // negative regulation of cell death // inferred from direct assay /// 0060732 // positive regulation of inositol phosphate biosynthetic process // inferred from direct assay 0000139 // Golgi membrane // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0005923 // tight junction // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay 0001634 // pituitary adenylate cyclase-activating polypeptide receptor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004999 // vasoactive intestinal polypeptide receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0008179 // adenylate cyclase binding // inferred from direct assay /// 0042923 // neuropeptide binding // inferred from direct assay 1368731_at NM_053288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053288.1 /DB_XREF=gi:16757979 /GEN=Orm1 /FEA=FLmRNA /CNT=7 /TID=Rn.10295.1 /TIER=FL /STK=3 /UG=Rn.10295 /LL=24614 /DEF=Rattus norvegicus Orosomucoid 1 (Orm1), mRNA. /PROD=orosomucoid 1 /FL=gb:NM_053288.1 gb:J00696.1 NM_053288 orosomucoid 1 Orm1 24614 NM_053288 0002438 // acute inflammatory response to antigenic stimulus // inferred from expression pattern /// 0002439 // chronic inflammatory response to antigenic stimulus // inferred from expression pattern /// 0002682 // regulation of immune system process // inferred from electronic annotation /// 0006953 // acute-phase response // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0031100 // organ regeneration // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033197 // response to vitamin E // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0071300 // cellular response to retinoic acid // inferred from expression pattern /// 0071378 // cellular response to growth hormone stimulus // inferred from expression pattern /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008144 // drug binding // inferred from direct assay 1368732_at NM_032056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032056.1 /DB_XREF=gi:14091733 /GEN=Tap2 /FEA=FLmRNA /CNT=6 /TID=Rn.10372.1 /TIER=FL /STK=3 /UG=Rn.10372 /LL=24812 /DEF=Rattus norvegicus Transporter 2, ABC (ATP binding cassette) (Tap2), mRNA. /PROD=transporter 2, ABC (ATP binding cassette) /FL=gb:NM_032056.1 NM_032056 transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) Tap2 24812 NM_032056 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from direct assay /// 0001916 // positive regulation of T cell mediated cytotoxicity // not recorded /// 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002237 // response to molecule of bacterial origin // inferred from electronic annotation /// 0002237 // response to molecule of bacterial origin // not recorded /// 0002481 // antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent // inferred from electronic annotation /// 0002481 // antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent // not recorded /// 0002485 // antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent // inferred from electronic annotation /// 0002485 // antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent // not recorded /// 0002489 // antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent // inferred from electronic annotation /// 0002489 // antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent // not recorded /// 0002591 // positive regulation of antigen processing and presentation of peptide antigen via MHC class I // inferred from mutant phenotype /// 0006461 // protein complex assembly // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0015833 // peptide transport // inferred from mutant phenotype /// 0015833 // peptide transport // inferred from electronic annotation /// 0019060 // intracellular transport of viral proteins in host cell // not recorded /// 0019885 // antigen processing and presentation of endogenous peptide antigen via MHC class I // inferred from direct assay /// 0019885 // antigen processing and presentation of endogenous peptide antigen via MHC class I // not recorded /// 0042270 // protection from natural killer cell mediated cytotoxicity // inferred from mutant phenotype /// 0046967 // cytosol to ER transport // not recorded /// 0046968 // peptide antigen transport // not recorded /// 0046968 // peptide antigen transport // traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0030176 // integral to endoplasmic reticulum membrane // not recorded /// 0042824 // MHC class I peptide loading complex // inferred from direct assay /// 0042825 // TAP complex // inferred from direct assay /// 0042825 // TAP complex // not recorded 0000166 // nucleotide binding // inferred from direct assay /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005215 // transporter activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0015197 // peptide transporter activity // inferred from electronic annotation /// 0015197 // peptide transporter activity // not recorded /// 0015433 // peptide antigen-transporting ATPase activity // not recorded /// 0015433 // peptide antigen-transporting ATPase activity // traceable author statement /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042288 // MHC class I protein binding // inferred from direct assay /// 0042605 // peptide antigen binding // inferred from direct assay /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0043531 // ADP binding // inferred from direct assay /// 0046978 // TAP1 binding // inferred from physical interaction /// 0046978 // TAP1 binding // not recorded /// 0046979 // TAP2 binding // inferred from physical interaction /// 0046980 // tapasin binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from direct assay 1368733_at NM_012883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012883.1 /DB_XREF=gi:6981593 /GEN=Ste /FEA=FLmRNA /CNT=6 /TID=Rn.32104.1 /TIER=FL /STK=3 /UG=Rn.32104 /LL=25355 /DEF=Rattus norvegicus Estrogen sulfotransferase (Ste), mRNA. /PROD=estrogen sulfotransferase /FL=gb:U50205.1 gb:U50204.1 gb:M86758.1 gb:NM_012883.1 NM_012883 sulfotransferase family 1E, estrogen-preferring, member 1 Sult1e1 25355 NM_012883 0007565 // female pregnancy // inferred from electronic annotation /// 0007565 // female pregnancy // not recorded /// 0008210 // estrogen metabolic process // not recorded /// 0008210 // estrogen metabolic process // traceable author statement /// 0008210 // estrogen metabolic process // inferred from electronic annotation /// 0051923 // sulfation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004304 // estrone sulfotransferase activity // inferred from direct assay /// 0004304 // estrone sulfotransferase activity // inferred from electronic annotation /// 0005496 // steroid binding // inferred from electronic annotation /// 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0047894 // flavonol 3-sulfotransferase activity // not recorded /// 0050294 // steroid sulfotransferase activity // not recorded 1368734_at NM_019298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019298.1 /DB_XREF=gi:9506486 /GEN=Chrnd /FEA=FLmRNA /CNT=6 /TID=Rn.41469.1 /TIER=FL /STK=3 /UG=Rn.41469 /LL=54240 /DEF=Rattus norvegicus cholinergic receptor, nicotinic, delta polypeptide (Chrnd), mRNA. /PROD=cholinergic receptor, nicotinic, deltapolypeptide /FL=gb:NM_019298.1 NM_019298 cholinergic receptor, nicotinic, delta Chrnd 54240 NM_019298 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0042391 // regulation of membrane potential // not recorded /// 0048630 // skeletal muscle tissue growth // not recorded /// 0050881 // musculoskeletal movement // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from mutant phenotype /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from direct assay /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // not recorded /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015276 // ligand-gated ion channel activity // inferred from direct assay /// 0042166 // acetylcholine binding // not recorded 1368735_a_at NM_017207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017207.1 /DB_XREF=gi:8394534 /GEN=Vrl1 /FEA=FLmRNA /CNT=5 /TID=Rn.44866.1 /TIER=FL /STK=3 /UG=Rn.44866 /LL=29465 /DEF=Rattus norvegicus vanilloid receptor-like protein 1 (Vrl1), mRNA. /PROD=vanilloid receptor-like protein 1 /FL=gb:AF129113.1 gb:NM_017207.1 gb:AB022332.1 NM_017207 transient receptor potential cation channel, subfamily V, member 2 Trpv2 29465 NM_017207 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0009266 // response to temperature stimulus // not recorded /// 0009266 // response to temperature stimulus // inferred from electronic annotation /// 0009408 // response to heat // inferred from direct assay /// 0034220 // ion transmembrane transport // not recorded /// 0070588 // calcium ion transmembrane transport // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // not recorded /// 0005261 // cation channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // not recorded 1368736_at NM_019203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019203.1 /DB_XREF=gi:9507210 /GEN=Tsx /FEA=FLmRNA /CNT=5 /TID=Rn.11146.1 /TIER=FL /STK=3 /UG=Rn.11146 /LL=29391 /DEF=Rattus norvegicus testis specific X-linked gene (Tsx), mRNA. /PROD=testis specific X-linked gene /FL=gb:NM_019203.1 NM_019203 testis specific X-linked gene Tsx 29391 NM_019203 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1368737_at NM_022709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022709.1 /DB_XREF=gi:12083678 /GEN=Smr2 /FEA=FLmRNA /CNT=5 /TID=Rn.9928.1 /TIER=FL /STK=3 /UG=Rn.9928 /LL=64675 /DEF=Rattus norvegicus SMR2 (Smr2), mRNA. /PROD=SMR2 /FL=gb:J05490.1 gb:NM_022709.1 NM_022709 0005576 // extracellular region // inferred from electronic annotation 1368738_at D11354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D11354.1 /DB_XREF=gi:303795 /GEN=CYP 11B /FEA=FLmRNA /CNT=6 /TID=Rn.32084.1 /TIER=FL /STK=2 /UG=Rn.32084 /LL=24295 /DEF=Rattus norvegicus mRNA for cytochrome P-450-11beta, complete cds. /PROD=cytochrome P-450-11beta /FL=gb:D10107.1 gb:NM_012539.1 gb:D11354.1 D11354 cytochrome P450, family 11, subfamily b, polypeptide 1 Cyp11b1 500892 NM_012537 0006694 // steroid biosynthetic process // inferred from direct assay /// 0006694 // steroid biosynthetic process // not recorded /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006700 // C21-steroid hormone biosynthetic process // not recorded /// 0006704 // glucocorticoid biosynthetic process // not recorded /// 0008202 // steroid metabolic process // traceable author statement /// 0008211 // glucocorticoid metabolic process // traceable author statement /// 0008217 // regulation of blood pressure // not recorded /// 0032342 // aldosterone biosynthetic process // not recorded /// 0034651 // cortisol biosynthetic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004507 // steroid 11-beta-monooxygenase activity // inferred from direct assay /// 0004507 // steroid 11-beta-monooxygenase activity // not recorded /// 0004507 // steroid 11-beta-monooxygenase activity // inferred from electronic annotation /// 0005496 // steroid binding // inferred from direct assay /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047783 // corticosterone 18-monooxygenase activity // not recorded 1368739_s_at D11354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D11354.1 /DB_XREF=gi:303795 /GEN=CYP 11B /FEA=FLmRNA /CNT=6 /TID=Rn.32084.1 /TIER=FL /STK=2 /UG=Rn.32084 /LL=24295 /DEF=Rattus norvegicus mRNA for cytochrome P-450-11beta, complete cds. /PROD=cytochrome P-450-11beta /FL=gb:D10107.1 gb:NM_012539.1 gb:D11354.1 D11354 cytochrome P450, family 11, subfamily b, polypeptide 1 /// cytochrome P450, family 11, subfamily b, polypeptide 2 /// cytochrome P450, family 11, subfamily b, polypeptide 3 /// cytochrome P450 11B1, mitochondrial-like Cyp11b1 /// Cyp11b2 /// Cyp11b3 /// LOC100366002 100366002 /// 24294 /// 353498 /// 500892 NM_012537 /// NM_012538 /// NM_181824 /// XM_002726937 0001991 // regulation of systemic arterial blood pressure by circulatory renin-angiotensin // inferred from electronic annotation /// 0001991 // regulation of systemic arterial blood pressure by circulatory renin-angiotensin // not recorded /// 0002017 // regulation of blood volume by renal aldosterone // inferred from electronic annotation /// 0002017 // regulation of blood volume by renal aldosterone // not recorded /// 0006694 // steroid biosynthetic process // not recorded /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from direct assay /// 0006700 // C21-steroid hormone biosynthetic process // inferred from direct assay /// 0006700 // C21-steroid hormone biosynthetic process // not recorded /// 0006704 // glucocorticoid biosynthetic process // not recorded /// 0008202 // steroid metabolic process // inferred from mutant phenotype /// 0008202 // steroid metabolic process // traceable author statement /// 0008211 // glucocorticoid metabolic process // traceable author statement /// 0008217 // regulation of blood pressure // not recorded /// 0009651 // response to salt stress // inferred from expression pattern /// 0032342 // aldosterone biosynthetic process // inferred from electronic annotation /// 0032342 // aldosterone biosynthetic process // not recorded /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0034651 // cortisol biosynthetic process // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042756 // drinking behavior // inferred from electronic annotation /// 0042756 // drinking behavior // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045777 // positive regulation of blood pressure // inferred from mutant phenotype /// 0050801 // ion homeostasis // inferred from electronic annotation /// 0050801 // ion homeostasis // not recorded /// 0055075 // potassium ion homeostasis // not recorded /// 0055078 // sodium ion homeostasis // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004507 // steroid 11-beta-monooxygenase activity // inferred from direct assay /// 0004507 // steroid 11-beta-monooxygenase activity // not recorded /// 0004507 // steroid 11-beta-monooxygenase activity // inferred from electronic annotation /// 0005496 // steroid binding // inferred from direct assay /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008395 // steroid hydroxylase activity // inferred from mutant phenotype /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047783 // corticosterone 18-monooxygenase activity // inferred from direct assay /// 0047783 // corticosterone 18-monooxygenase activity // inferred from electronic annotation /// 0047783 // corticosterone 18-monooxygenase activity // not recorded 1368740_at NM_012721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012721.1 /DB_XREF=gi:6981321 /GEN=P2rxl1 /FEA=FLmRNA /CNT=5 /TID=Rn.10258.1 /TIER=FL /STK=3 /UG=Rn.10258 /LL=25041 /DEF=Rattus norvegicus purinergic receptor P2X-like 1, orphan receptor (P2rxl1), mRNA. /PROD=purinergic receptor P2X-like 1, orphan receptor /FL=gb:NM_012721.1 NM_012721 purinergic receptor P2X, ligand-gated ion channel, 6 P2rx6 25041 NM_012721 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030054 // cell junction // not recorded /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0004931 // extracellular ATP-gated cation channel activity // inferred from direct assay /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1368741_at NM_057146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057146.1 /DB_XREF=gi:16924005 /GEN=C9 /FEA=FLmRNA /CNT=5 /TID=Rn.10252.1 /TIER=FL /STK=3 /UG=Rn.10252 /LL=117512 /DEF=Rattus norvegicus complement component 9 (C9), mRNA. /PROD=complement component 9 /FL=gb:U52948.1 gb:NM_057146.1 NM_057146 complement component 9 C9 117512 NM_057146 0006917 // induction of apoptosis // inferred from direct assay /// 0006919 // activation of caspase activity // inferred from direct assay /// 0006957 // complement activation, alternative pathway // inferred from electronic annotation /// 0006958 // complement activation, classical pathway // traceable author statement /// 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from mutant phenotype /// 0019835 // cytolysis // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005579 // membrane attack complex // traceable author statement /// 0005579 // membrane attack complex // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1368742_at NM_053619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053619.1 /DB_XREF=gi:16758417 /GEN=C5r1 /FEA=FLmRNA /CNT=5 /TID=Rn.10680.1 /TIER=FL /STK=3 /UG=Rn.10680 /LL=113959 /DEF=Rattus norvegicus complement component 5, receptor 1 (C5r1), mRNA. /PROD=complement component 5, receptor 1 /FL=gb:AB003042.1 gb:NM_053619.1 NM_053619 complement component 5a receptor 1 C5ar1 113959 NM_053619 0002430 // complement receptor mediated signaling pathway // inferred from mutant phenotype /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from expression pattern /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0010575 // positive regulation vascular endothelial growth factor production // not recorded /// 0010759 // positive regulation of macrophage chemotaxis // not recorded /// 0030593 // neutrophil chemotaxis // not recorded /// 0032494 // response to peptidoglycan // not recorded /// 0043526 // neuroprotection // inferred from direct assay /// 0045766 // positive regulation of angiogenesis // not recorded /// 0050830 // defense response to Gram-positive bacterium // not recorded /// 0090023 // positive regulation of neutrophil chemotaxis // not recorded 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001856 // complement component C5a binding // inferred from direct assay /// 0001856 // complement component C5a binding // inferred from mutant phenotype /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004878 // complement component C5a receptor activity // inferred from direct assay /// 0004878 // complement component C5a receptor activity // traceable author statement /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004942 // anaphylatoxin receptor activity // inferred from electronic annotation /// 0004944 // C5a anaphylatoxin receptor activity // inferred from direct assay /// 0004944 // C5a anaphylatoxin receptor activity // inferred from mutant phenotype /// 0004944 // C5a anaphylatoxin receptor activity // not recorded /// 0004944 // C5a anaphylatoxin receptor activity // inferred from electronic annotation 1368743_a_at NM_012790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012790.2 /DB_XREF=gi:19923671 /GEN=Dspp /FEA=FLmRNA /CNT=4 /TID=Rn.21392.1 /TIER=FL /STK=3 /UG=Rn.21392 /LL=25254 /DEF=Rattus norvegicus Dentin sialoprotein (Dspp), mRNA. /PROD=dentin sialoprotein /FL=gb:NM_012790.2 gb:AF250374.1 gb:U02074.1 NM_012790 dentin sialophosphoprotein Dspp 25254 NM_012790 0030154 // cell differentiation // inferred from expression pattern /// 0031214 // biomineral tissue development // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // inferred from expression pattern /// 0042476 // odontogenesis // inferred from expression pattern /// 0071460 // cellular response to cell-matrix adhesion // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay 1368744_a_at AF250373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF250373.1 /DB_XREF=gi:18958382 /FEA=FLmRNA /CNT=1 /TID=Rn.21392.4 /TIER=FL /STK=1 /UG=Rn.21392 /LL=25254 /UG_GENE=Dspp /DEF=Rattus norvegicus dentin sialoprotein II mRNA, complete cds. /PROD=dentin sialoprotein II /FL=gb:AF250373.1 AF250373 dentin sialophosphoprotein Dspp 25254 NM_012790 0030154 // cell differentiation // inferred from expression pattern /// 0031214 // biomineral tissue development // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // inferred from expression pattern /// 0042476 // odontogenesis // inferred from expression pattern /// 0071460 // cellular response to cell-matrix adhesion // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay 1368745_at NM_017222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017222.2 /DB_XREF=gi:15011856 /GEN=Slc10a2 /FEA=FLmRNA /CNT=4 /TID=Rn.10729.1 /TIER=FL /STK=3 /UG=Rn.10729 /LL=29500 /DEF=Rattus norvegicus solute carrier family 10, member 2 (Slc10a2), mRNA. /PROD=solute carrier family 10, member 2 /FL=gb:NM_017222.2 gb:U07183.2 NM_017222 solute carrier family 10 (sodium/bile acid cotransporter family), member 2 Slc10a2 29500 NM_017222 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // traceable author statement /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0008206 // bile acid metabolic process // traceable author statement /// 0015711 // organic anion transport // inferred from electronic annotation /// 0015721 // bile acid and bile salt transport // inferred from direct assay 0000502 // proteasome complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay 0008508 // bile acid:sodium symporter activity // inferred from direct assay /// 0008508 // bile acid:sodium symporter activity // traceable author statement /// 0008508 // bile acid:sodium symporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation 1368746_a_at U94913 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U94913.1 /DB_XREF=gi:2735427 /GEN=HKalpha2b /FEA=FLmRNA /CNT=1 /TID=Rn.9858.2 /TIER=FL /STK=1 /UG=Rn.9858 /LL=171028 /DEF=Rattus norvegicus H-K-ATPase alpha 2b subunit (HKalpha2b) mRNA, complete cds. /PROD=H-K-ATPase alpha 2b subunit /FL=gb:U94913.1 U94913 ATPase, H+/K+ transporting, nongastric, alpha polypeptide Atp12a 171028 NM_133517 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006813 // potassium ion transport // non-traceable author statement /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010038 // response to metal ion // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0015672 // monovalent inorganic cation transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0030001 // metal ion transport // inferred from direct assay /// 0055075 // potassium ion homeostasis // inferred from electronic annotation /// 0055075 // potassium ion homeostasis // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008900 // hydrogen:potassium-exchanging ATPase activity // inferred by curator /// 0008900 // hydrogen:potassium-exchanging ATPase activity // inferred from direct assay /// 0008900 // hydrogen:potassium-exchanging ATPase activity // non-traceable author statement /// 0008900 // hydrogen:potassium-exchanging ATPase activity // inferred from electronic annotation /// 0015077 // monovalent inorganic cation transmembrane transporter activity // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368747_at NM_031074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031074.1 /DB_XREF=gi:13592016 /GEN=Nup98 /FEA=FLmRNA /CNT=4 /TID=Rn.11324.1 /TIER=FL /STK=3 /UG=Rn.11324 /LL=81738 /DEF=Rattus norvegicus nucleoporin 98 (Nup98), mRNA. /PROD=nucleoporin 98 /FL=gb:NM_031074.1 gb:L39991.1 NM_031074 nucleoporin 98 Nup98 81738 NM_031074 0000059 // protein import into nucleus, docking // inferred from mutant phenotype /// 0006260 // DNA replication // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0000776 // kinetochore // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005635 // nuclear envelope // not recorded /// 0005643 // nuclear pore // inferred from direct assay /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005643 // nuclear pore // not recorded /// 0005654 // nucleoplasm // inferred from direct assay /// 0031080 // Nup107-160 complex // not recorded /// 0031080 // Nup107-160 complex // inferred from sequence or structural similarity /// 0046930 // pore complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0015288 // porin activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay 1368748_at NM_133396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133396.1 /DB_XREF=gi:19173753 /GEN=Tesk2 /FEA=FLmRNA /CNT=4 /TID=Rn.7557.1 /TIER=FL /STK=3 /UG=Rn.7557 /DEF=Rattus norvegicus testis-specific kinase 2 (Tesk2), mRNA. /PROD=testis-specific kinase 2 /FL=gb:AB049402.1 gb:NM_133396.1 NM_133396 testis-specific kinase 2 Tesk2 170908 NM_133396 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // non-traceable author statement /// 0007283 // spermatogenesis // inferred from expression pattern /// 0023034 // intracellular signaling pathway // non-traceable author statement /// 0030036 // actin cytoskeleton organization // inferred from mutant phenotype /// 0048041 // focal adhesion assembly // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from mutant phenotype 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368749_at NM_053954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053954.1 /DB_XREF=gi:16758837 /GEN=Kcns1 /FEA=FLmRNA /CNT=4 /TID=Rn.30012.1 /TIER=FL /STK=3 /UG=Rn.30012 /LL=117023 /DEF=Rattus norvegicus K+ voltage-gated channel, subfamily S, 1 (Kcns1), mRNA. /PROD=K+ voltage-gated channel, subfamily S, 1 /FL=gb:NM_053954.1 NM_053954 potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1 Kcns1 117023 NM_053954 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // not recorded /// 0008076 // voltage-gated potassium channel complex // inferred from sequence or structural similarity /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005251 // delayed rectifier potassium channel activity // not recorded /// 0005251 // delayed rectifier potassium channel activity // inferred from sequence or structural similarity /// 0005251 // delayed rectifier potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015459 // potassium channel regulator activity // not recorded /// 0015459 // potassium channel regulator activity // inferred from sequence or structural similarity /// 0015459 // potassium channel regulator activity // inferred from electronic annotation 1368750_a_at NM_017032 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017032.1 /DB_XREF=gi:8393931 /GEN=Pde4d /FEA=FLmRNA /CNT=4 /TID=Rn.10004.1 /TIER=FL /STK=3 /UG=Rn.10004 /LL=24627 /DEF=Rattus norvegicus Phosphodiesterase 4D, cAMP-specific (dunce (Drosophila)-homolog phosphodiesterase E3) (Pde4d), mRNA. /PROD=phosphodiesterase 4D, cAMP-specific (dunce(Drosophila)-homolog phosphodiesterase E3) /FL=gb:NM_017032.1 gb:AF031373.1 gb:U09457.1 NM_017032 phosphodiesterase 4D, cAMP-specific (phosphodiesterase E3 dunce homolog, Drosophila) Pde4d 24627 NM_001113328 /// NM_001113329 /// NM_001113332 /// NM_001113334 /// NM_017032 0006198 // cAMP catabolic process // inferred from direct assay /// 0006198 // cAMP catabolic process // inferred from mutant phenotype /// 0006198 // cAMP catabolic process // not recorded /// 0006939 // smooth muscle contraction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007613 // memory // inferred from expression pattern /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0010738 // regulation of protein kinase A signaling cascade // inferred from mutant phenotype /// 0043623 // cellular protein complex assembly // inferred from direct assay 0000267 // cell fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030016 // myofibril // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004112 // cyclic-nucleotide phosphodiesterase activity // inferred from direct assay /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from direct assay /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from mutant phenotype /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030552 // cAMP binding // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation 1368751_at NM_031778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031778.1 /DB_XREF=gi:13994132 /GEN=Kcns3 /FEA=FLmRNA /CNT=4 /TID=Rn.10878.1 /TIER=FL /STK=3 /UG=Rn.10878 /LL=83588 /DEF=Rattus norvegicus Shab-related delayed-rectifier K+ channel (Kv9.3) (Kcns3), mRNA. /PROD=Shab-related delayed-rectifier K+ channel(Kv9.3) /FL=gb:NM_031778.1 gb:AF029056.1 NM_031778 potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3 Kcns3 83588 NM_031778 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1368752_at NM_017053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017053.1 /DB_XREF=gi:8394407 /GEN=Tacr3 /FEA=FLmRNA /CNT=4 /TID=Rn.9702.1 /TIER=FL /STK=3 /UG=Rn.9702 /LL=24808 /DEF=Rattus norvegicus Neuromedin K receptor (Neurokinin BTachikin 3) (Tacr3), mRNA. /PROD=neuromedin K receptor (Neurokinin BTachikin 3) /FL=gb:J05189.1 gb:NM_017053.1 NM_017053 tachykinin receptor 3 Tacr3 24808 NM_017053 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0010460 // positive regulation of heart rate // inferred from direct assay /// 0032355 // response to estradiol stimulus // inferred from direct assay /// 0042053 // regulation of dopamine metabolic process // inferred from direct assay /// 0042220 // response to cocaine // inferred from mutant phenotype /// 0042538 // hyperosmotic salinity response // inferred from direct assay /// 0043278 // response to morphine // inferred from expression pattern /// 0045777 // positive regulation of blood pressure // inferred from direct assay /// 0060259 // regulation of feeding behavior // inferred from direct assay /// 0070474 // positive regulation of uterine smooth muscle contraction // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032590 // dendrite membrane // inferred from direct assay /// 0032809 // neuronal cell body membrane // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004995 // tachykinin receptor activity // inferred from direct assay /// 0004995 // tachykinin receptor activity // inferred from electronic annotation 1368753_at NM_031338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031338.1 /DB_XREF=gi:13786171 /GEN=Camkk2 /FEA=FLmRNA /CNT=4 /TID=Rn.30038.1 /TIER=FL /STK=3 /UG=Rn.30038 /LL=83506 /DEF=Rattus norvegicus Ca+Calmodulin-dependent protein kinase kinase beta (CaM-kinase kinase beta) (Camkk2), mRNA. /PROD=Ca+Calmodulin-dependent protein kinase kinasebeta (CaM-kinase kinase beta) /FL=gb:NM_031338.1 gb:AB018081.1 NM_031338 calcium/calmodulin-dependent protein kinase kinase 2, beta Camkk2 83506 NM_031338 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // traceable author statement /// 0032147 // activation of protein kinase activity // inferred from direct assay /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from sequence or structural similarity 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from direct assay /// 0004683 // calmodulin-dependent protein kinase activity // traceable author statement /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030295 // protein kinase activator activity // traceable author statement 1368754_at NM_057124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057124.1 /DB_XREF=gi:16923973 /GEN=P2ry6 /FEA=FLmRNA /CNT=4 /TID=Rn.10671.1 /TIER=FL /STK=3 /UG=Rn.10671 /LL=117264 /DEF=Rattus norvegicus pyrimidinergic receptor P2Y, G-protein coupled, 6 (P2ry6), mRNA. /PROD=pyrimidinergic receptor P2Y, G-protein coupled,6 /FL=gb:NM_057124.1 gb:D63665.1 NM_057124 pyrimidinergic receptor P2Y, G-protein coupled, 6 P2ry6 117264 NM_057124 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0014911 // positive regulation of smooth muscle cell migration // inferred from mutant phenotype /// 0030321 // transepithelial chloride transport // inferred from electronic annotation /// 0030321 // transepithelial chloride transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0045028 // purinergic nucleotide receptor activity, G-protein coupled // inferred from electronic annotation /// 0045029 // UDP-activated nucleotide receptor activity // inferred from electronic annotation /// 0045029 // UDP-activated nucleotide receptor activity // not recorded 1368755_at NM_053753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053753.1 /DB_XREF=gi:16758587 /GEN=Kclr /FEA=FLmRNA /CNT=4 /TID=Rn.9886.1 /TIER=FL /STK=3 /UG=Rn.9886 /LL=114598 /DEF=Rattus norvegicus Kupffer cell receptor (Kclr), mRNA. /PROD=Kupffer cell receptor /FL=gb:NM_053753.1 gb:J03734.1 NM_053753 C-type lectin domain family 4, member f Clec4f 114598 NM_053753 0006897 // endocytosis // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // traceable author statement /// 0005529 // sugar binding // inferred from electronic annotation 1368756_at NM_022705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022705.1 /DB_XREF=gi:12083670 /GEN=Mch /FEA=FLmRNA /CNT=4 /TID=Rn.9674.1 /TIER=FL /STK=3 /UG=Rn.9674 /LL=64669 /DEF=Rattus norvegicus medium-chain S-acyl fatty acid synthetase thio ester hydrolase (MCH) (Mch), mRNA. /PROD=medium-chain S-acyl fatty acid synthetase thioester hydrolase (MCH) /FL=gb:NM_022705.1 gb:M16200.1 NM_022705 oleoyl-ACP hydrolase Olah 64669 NM_022705 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation 0004320 // oleoyl-[acyl-carrier-protein] hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation 1368757_at NM_053762 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053762.1 /DB_XREF=gi:16758595 /GEN=Zp3 /FEA=FLmRNA /CNT=4 /TID=Rn.10892.1 /TIER=FL /STK=3 /UG=Rn.10892 /LL=114639 /DEF=Rattus norvegicus zona pellucida glycoprotein 3 (Zp3), mRNA. /PROD=zona pellucida glycoprotein 3 /FL=gb:D78482.1 gb:NM_053762.1 NM_053762 zona pellucida glycoprotein 3 (sperm receptor) Zp3 114639 NM_053762 0007338 // single fertilization // inferred from electronic annotation /// 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation /// 0007339 // binding of sperm to zona pellucida // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0032190 // acrosin binding // inferred from electronic annotation /// 0032190 // acrosin binding // not recorded 1368758_a_at NM_019172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019172.1 /DB_XREF=gi:9506708 /GEN=Galr2 /FEA=FLmRNA /CNT=4 /TID=Rn.9789.1 /TIER=FL /STK=3 /UG=Rn.9789 /LL=29234 /DEF=Rattus norvegicus galanin receptor 2 (Galr2), mRNA. /PROD=galanin receptor 2 /FL=gb:AF010318.1 gb:NM_019172.1 gb:AF008548.1 NM_019172 galanin receptor 2 Galr2 29234 NM_019172 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from mutant phenotype /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0031175 // neuron projection development // inferred from electronic annotation /// 0031175 // neuron projection development // not recorded /// 0043647 // inositol phosphate metabolic process // inferred from direct assay /// 0046488 // phosphatidylinositol metabolic process // inferred from direct assay 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004966 // galanin receptor activity // inferred from direct assay /// 0004966 // galanin receptor activity // inferred from mutant phenotype /// 0004966 // galanin receptor activity // inferred from electronic annotation /// 0042923 // neuropeptide binding // inferred from direct assay /// 0042923 // neuropeptide binding // inferred from mutant phenotype 1368759_at NM_053351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053351.1 /DB_XREF=gi:16758071 /GEN=Cacng2 /FEA=FLmRNA /CNT=4 /TID=Rn.72939.1 /TIER=FL /STK=3 /UG=Rn.72939 /LL=84347 /DEF=Rattus norvegicus calcium channel, voltage-dependent, gamma subunit 2 (Cacng2), mRNA. /PROD=calcium channel, voltage-dependent, gammasubunit 2 /FL=gb:AF118818.1 gb:NM_053351.1 gb:AF361339.1 NM_053351 calcium channel, voltage-dependent, gamma subunit 2 Cacng2 84347 NM_053351 0006816 // calcium ion transport // inferred from electronic annotation /// 0007528 // neuromuscular junction development // not recorded /// 0007528 // neuromuscular junction development // inferred from electronic annotation /// 0019226 // transmission of nerve impulse // not recorded /// 0019226 // transmission of nerve impulse // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0050877 // neurological system process // not recorded /// 0050877 // neurological system process // inferred from electronic annotation /// 0051899 // membrane depolarization // not recorded /// 0051899 // membrane depolarization // inferred from electronic annotation /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0060081 // membrane hyperpolarization // not recorded /// 0060081 // membrane hyperpolarization // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // not recorded 0005245 // voltage-gated calcium channel activity // not recorded /// 0005245 // voltage-gated calcium channel activity // traceable author statement /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005246 // calcium channel regulator activity // non-traceable author statement /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction 1368760_at NM_053647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053647.1 /DB_XREF=gi:16758459 /GEN=Scyb2 /FEA=FLmRNA /CNT=4 /TID=Rn.10230.1 /TIER=FL /STK=3 /UG=Rn.10230 /LL=114105 /DEF=Rattus norvegicus small inducible cytokine subfamily, member 2 (Scyb2), mRNA. /PROD=small inducible cytokine subfamily, member 2 /FL=gb:NM_053647.1 gb:AB060092.1 gb:U45965.1 NM_053647 chemokine (C-X-C motif) ligand 2 Cxcl2 114105 NM_053647 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // inferred from mutant phenotype /// 0030595 // leukocyte chemotaxis // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // traceable author statement /// 0008009 // chemokine activity // inferred from electronic annotation 1368761_at NM_021701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021701.1 /DB_XREF=gi:11067440 /GEN=Cblp /FEA=FLmRNA /CNT=4 /TID=Rn.42928.1 /TIER=FL /STK=3 /UG=Rn.42928 /LL=60330 /DEF=Rattus norvegicus calcineurin B-like protein (Cblp), mRNA. /PROD=calcineurin B-like protein /FL=gb:NM_021701.1 gb:D10393.1 NM_021701 protein phosphatase 3, regulatory subunit B, beta isoform Ppp3r2 29749 NM_021701 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1368762_at NM_053299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053299.1 /DB_XREF=gi:16757995 /GEN=Ubd /FEA=FLmRNA /CNT=4 /TID=Rn.18473.1 /TIER=FL /STK=3 /UG=Rn.18473 /LL=29168 /DEF=Rattus norvegicus ubiquitin D (Ubd), mRNA. /PROD=ubiquitin D /FL=gb:NM_053299.1 NM_053299 ubiquitin D Ubd 29168 NM_053299 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from sequence or structural similarity /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0034341 // response to interferon-gamma // inferred from electronic annotation /// 0034341 // response to interferon-gamma // not recorded /// 0034612 // response to tumor necrosis factor // inferred from electronic annotation /// 0034612 // response to tumor necrosis factor // not recorded /// 0035417 // negative regulation of mitotic prometaphase // not recorded /// 0035417 // negative regulation of mitotic prometaphase // inferred from sequence or structural similarity /// 0035417 // negative regulation of mitotic prometaphase // inferred from electronic annotation /// 0043011 // myeloid dendritic cell differentiation // not recorded /// 0043011 // myeloid dendritic cell differentiation // inferred from sequence or structural similarity /// 0043011 // myeloid dendritic cell differentiation // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from sequence or structural similarity /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0070842 // aggresome assembly // not recorded /// 0070842 // aggresome assembly // inferred from sequence or structural similarity /// 0070842 // aggresome assembly // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016235 // aggresome // not recorded /// 0016235 // aggresome // inferred from sequence or structural similarity /// 0016235 // aggresome // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0070628 // proteasome binding // not recorded /// 0070628 // proteasome binding // inferred from sequence or structural similarity /// 0070628 // proteasome binding // inferred from electronic annotation 1368763_at NM_031513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031513.1 /DB_XREF=gi:13928693 /GEN=Il3 /FEA=FLmRNA /CNT=4 /TID=Rn.10652.1 /TIER=FL /STK=3 /UG=Rn.10652 /LL=24495 /DEF=Rattus norvegicus Interleukin 3 (Il3), mRNA. /PROD=interleukin 3 /FL=gb:NM_031513.1 gb:U81493.1 gb:U81492.1 NM_031513 interleukin 3 Il3 24495 NM_031513 0001558 // regulation of cell growth // inferred from mutant phenotype /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0002763 // positive regulation of myeloid leukocyte differentiation // inferred from electronic annotation /// 0002763 // positive regulation of myeloid leukocyte differentiation // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0009725 // response to hormone stimulus // inferred from mutant phenotype /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0010507 // negative regulation of autophagy // inferred from electronic annotation /// 0010507 // negative regulation of autophagy // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0030097 // hemopoiesis // inferred from mutant phenotype /// 0033026 // negative regulation of mast cell apoptosis // inferred from electronic annotation /// 0033026 // negative regulation of mast cell apoptosis // not recorded /// 0033028 // myeloid cell apoptosis // inferred from electronic annotation /// 0033028 // myeloid cell apoptosis // not recorded /// 0042523 // positive regulation of tyrosine phosphorylation of Stat5 protein // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045740 // positive regulation of DNA replication // not recorded /// 0045885 // positive regulation of survival gene product expression // inferred from electronic annotation /// 0045885 // positive regulation of survival gene product expression // not recorded /// 0045885 // positive regulation of survival gene product expression // inferred from sequence or structural similarity /// 0046330 // positive regulation of JNK cascade // inferred from electronic annotation /// 0046330 // positive regulation of JNK cascade // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from sequence or structural similarity /// 0070668 // positive regulation of mast cell proliferation // inferred from electronic annotation /// 0070668 // positive regulation of mast cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // inferred from sequence or structural similarity 0005125 // cytokine activity // inferred from direct assay /// 0005125 // cytokine activity // inferred from mutant phenotype /// 0005125 // cytokine activity // not recorded /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // inferred from sequence or structural similarity /// 0005135 // interleukin-3 receptor binding // inferred from mutant phenotype /// 0005135 // interleukin-3 receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded 1368764_at NM_022643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022643.1 /DB_XREF=gi:12025523 /GEN=Th2b /FEA=FLmRNA /CNT=4 /TID=Rn.10104.1 /TIER=FL /STK=3 /UG=Rn.10104 /LL=24829 /DEF=Rattus norvegicus Testis-specific histone 2b (Th2b), mRNA. /PROD=testis-specific histone 2b /FL=gb:M18045.1 gb:NM_022643.1 gb:M18046.1 NM_022643 histone cluster 1, H2ba Hist1h2ba 24829 NM_022643 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation 1368765_at NM_053327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053327.1 /DB_XREF=gi:16758029 /GEN=Clcnk1 /FEA=FLmRNA /CNT=4 /TID=Rn.44408.1 /TIER=FL /STK=3 /UG=Rn.44408 /LL=79425 /DEF=Rattus norvegicus chloride channel K1 (Clcnk1), mRNA. /PROD=chloride channel K1 /FL=gb:NM_053327.1 gb:D13927.1 NM_053327 chloride channel Ka Clcnka 79425 NM_053327 0001822 // kidney development // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from electronic annotation /// 0007589 // body fluid secretion // inferred from expression pattern /// 0009268 // response to pH // inferred from expression pattern /// 0009414 // response to water deprivation // inferred from expression pattern /// 0050878 // regulation of body fluid levels // not recorded /// 0050878 // regulation of body fluid levels // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from expression pattern /// 0055085 // transmembrane transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0034707 // chloride channel complex // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from direct assay /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005247 // voltage-gated chloride channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from direct assay /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368766_at NM_012864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012864.1 /DB_XREF=gi:6981213 /GEN=Mmp7 /FEA=FLmRNA /CNT=4 /TID=Rn.10282.1 /TIER=FL /STK=3 /UG=Rn.10282 /LL=25335 /DEF=Rattus norvegicus Matrix metalloproteinase 7 (matrilysin) (Mmp7), mRNA. /PROD=matrix metalloproteinase 7 (matrilysin) /FL=gb:NM_012864.1 gb:L24374.1 NM_012864 matrix metallopeptidase 7 Mmp7 25335 NM_012864 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0030574 // collagen catabolic process // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368767_at NM_019258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019258.1 /DB_XREF=gi:9506524 /GEN=Cst8 /FEA=FLmRNA /CNT=4 /TID=Rn.18514.1 /TIER=FL /STK=3 /UG=Rn.18514 /LL=29679 /DEF=Rattus norvegicus cystatin 8 (cystatin-related epididymal spermatogenic) (Cst8), mRNA. /PROD=cystatin 8 (cystatin-related epididymalspermatogenic) /FL=gb:NM_019258.1 gb:AF090692.1 NM_019258 cystatin 8 (cystatin-related epididymal specific) Cst8 29679 NM_019258 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1368768_at NM_019265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019265.2 /DB_XREF=gi:15011860 /GEN=Scn11a /FEA=FLmRNA /CNT=3 /TID=Rn.30023.1 /TIER=FL /STK=3 /UG=Rn.30023 /LL=29701 /DEF=Rattus norvegicus sodium channel, voltage-gated, type XI, alpha polypeptide (Scn11a), mRNA. /PROD=sodium channel, voltage-gated, type XI, alphapolypeptide /FL=gb:AF059030.2 gb:NM_019265.2 NM_019265 sodium channel, voltage-gated, type XI, alpha Scn11a 29701 NM_019265 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // not recorded /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0001518 // voltage-gated sodium channel complex // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0044299 // C-fiber // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005248 // voltage-gated sodium channel activity // inferred from electronic annotation /// 0005248 // voltage-gated sodium channel activity // not recorded /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1368769_at NM_031760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031760.1 /DB_XREF=gi:13929071 /GEN=Abcb11 /FEA=FLmRNA /CNT=3 /TID=Rn.14539.1 /TIER=FL /STK=3 /UG=Rn.14539 /LL=83569 /DEF=Rattus norvegicus ATP-binding cassette, sub-family B (MDRTAP), member 11 (Abcb11), mRNA. /PROD=ATP-binding cassette, sub-family B (MDRTAP),member 11 /FL=gb:AF010597.1 gb:U69487.1 gb:NM_031760.1 NM_031760 ATP-binding cassette, sub-family B (MDR/TAP), member 11 Abcb11 83569 NM_031760 0006810 // transport // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0015722 // canalicular bile acid transport // inferred from direct assay /// 0042493 // response to drug // inferred from mutant phenotype /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0046618 // drug export // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0045177 // apical part of cell // not recorded /// 0046581 // intercellular canaliculus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0015126 // canalicular bile acid transmembrane transporter activity // inferred from direct assay /// 0015238 // drug transmembrane transporter activity // inferred from direct assay /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 1368770_at NM_022276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022276.1 /DB_XREF=gi:11560100 /GEN=Gcnt1 /FEA=FLmRNA /CNT=3 /TID=Rn.54473.1 /TIER=FL /STK=3 /UG=Rn.54473 /LL=64043 /DEF=Rattus norvegicus enzymatic glycosylation-regulating gene (Gcnt1), mRNA. /PROD=enzymatic glycosylation-regulating gene /FL=gb:NM_022276.1 NM_022276 glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase) Gcnt1 64043 NM_022276 0032868 // response to insulin stimulus // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0003829 // beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity // inferred from direct assay /// 0008375 // acetylglucosaminyltransferase activity // inferred from electronic annotation 1368771_at NM_134378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134378.1 /DB_XREF=gi:19705484 /GEN=LOC171396 /FEA=FLmRNA /CNT=3 /TID=Rn.69359.1 /TIER=FL /STK=3 /UG=Rn.69359 /DEF=Rattus norvegicus sulfatase FP (LOC171396), mRNA. /PROD=sulfatase FP /FL=gb:NM_134378.1 gb:AF230072.1 NM_134378 sulfatase 1 Sulf1 171396 NM_134378 0008152 // metabolic process // non-traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from mutant phenotype /// 0005783 // endoplasmic reticulum // non-traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from mutant phenotype /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // non-traceable author statement /// 0005795 // Golgi stack // inferred from electronic annotation /// 0009986 // cell surface // inferred from mutant phenotype /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0009986 // cell surface // non-traceable author statement /// 0009986 // cell surface // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004065 // arylsulfatase activity // not recorded /// 0004065 // arylsulfatase activity // inferred from sequence or structural similarity /// 0004065 // arylsulfatase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008484 // sulfuric ester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0018741 // alkyl sulfatase activity // non-traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 1368772_at NM_017049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017049.1 /DB_XREF=gi:8394312 /GEN=Slc4a3 /FEA=FLmRNA /CNT=3 /TID=Rn.9859.1 /TIER=FL /STK=3 /UG=Rn.9859 /LL=24781 /DEF=Rattus norvegicus Solute carrier family 4, member 3, anion exchange protein 3 (Slc4a3), mRNA. /PROD=solute carrier family 4, member 3, anionexchange protein 3 /FL=gb:J05167.1 gb:NM_017049.1 NM_017049 solute carrier family 4 (anion exchanger), member 3 Slc4a3 24781 NM_017049 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006820 // anion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from expression pattern 0005215 // transporter activity // inferred from electronic annotation /// 0005452 // inorganic anion exchanger activity // inferred from electronic annotation /// 0008509 // anion transmembrane transporter activity // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation /// 0015301 // anion:anion antiporter activity // inferred from electronic annotation 1368773_at NM_012955 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012955.1 /DB_XREF=gi:6978854 /GEN=Fshprh1 /FEA=FLmRNA /CNT=3 /TID=Rn.10411.1 /TIER=FL /STK=3 /UG=Rn.10411 /LL=25448 /DEF=Rattus norvegicus Follicle stimulating hormone primary response gene 1 (Leucine - rich primary resonse gene 1) (Fshprh1), mRNA. /PROD=follicle stimulating hormone primary responsegene 1 (Leucine - rich primary resonse gene 1) /FL=gb:NM_012955.1 NM_012955 centromere protein I Cenpi 25448 NM_012955 0042699 // follicle-stimulating hormone signaling pathway // inferred from expression pattern 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 1368774_a_at NM_019622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019622.1 /DB_XREF=gi:9665228 /GEN=Espn /FEA=FLmRNA /CNT=3 /TID=Rn.10538.1 /TIER=FL /STK=3 /UG=Rn.10538 /LL=56227 /DEF=Rattus norvegicus espin (Espn), mRNA. /PROD=espin /FL=gb:U46007.1 gb:NM_019622.1 NM_019622 espin Espn 56227 NM_019622 0007015 // actin filament organization // non-traceable author statement /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0030046 // parallel actin filament bundle assembly // not recorded /// 0051017 // actin filament bundle assembly // not recorded /// 0051017 // actin filament bundle assembly // non-traceable author statement /// 0051494 // negative regulation of cytoskeleton organization // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005902 // microvillus // inferred from direct assay /// 0005902 // microvillus // inferred from electronic annotation /// 0005903 // brush border // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0015629 // actin cytoskeleton // not recorded /// 0015629 // actin cytoskeleton // traceable author statement /// 0030054 // cell junction // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from direct assay /// 0032420 // stereocilium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from physical interaction /// 0051015 // actin filament binding // inferred from direct assay 1368775_at NM_133563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133563.1 /DB_XREF=gi:19424247 /GEN=Giot1 /FEA=FLmRNA /CNT=3 /TID=Rn.28997.1 /TIER=FL /STK=3 /UG=Rn.28997 /DEF=Rattus norvegicus gonadotropin inducible ovarian transcription factor 1 (Giot1), mRNA. /PROD=gonadotropin inducible ovarian transcriptionfactor 1 /FL=gb:AB047636.1 gb:NM_133563.1 NM_133563 gonadotropin inducible ovarian transcription factor 1 Giot1 171090 NM_133563 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368776_at NM_012822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012822.1 /DB_XREF=gi:6978492 /GEN=Alox5 /FEA=FLmRNA /CNT=3 /TID=Rn.9662.1 /TIER=FL /STK=3 /UG=Rn.9662 /LL=25290 /DEF=Rattus norvegicus arachidonate 5-lipoxygenase (Alox5), mRNA. /PROD=arachidonate 5-lipoxygenase /FL=gb:NM_012822.1 gb:J03960.1 NM_012822 arachidonate 5-lipoxygenase Alox5 25290 NM_012822 0002526 // acute inflammatory response // inferred from mutant phenotype /// 0002540 // leukotriene production involved in inflammatory response // inferred from electronic annotation /// 0002540 // leukotriene production involved in inflammatory response // not recorded /// 0006691 // leukotriene metabolic process // not recorded /// 0006691 // leukotriene metabolic process // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from expression pattern /// 0019233 // sensory perception of pain // inferred from mutant phenotype /// 0019369 // arachidonic acid metabolic process // inferred from mutant phenotype /// 0019370 // leukotriene biosynthetic process // not recorded /// 0019370 // leukotriene biosynthetic process // traceable author statement /// 0019370 // leukotriene biosynthetic process // inferred from electronic annotation /// 0019372 // lipoxygenase pathway // inferred from mutant phenotype /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay /// 0005635 // nuclear envelope // not recorded /// 0005635 // nuclear envelope // traceable author statement /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005641 // nuclear envelope lumen // not recorded /// 0005641 // nuclear envelope lumen // inferred from sequence or structural similarity /// 0005641 // nuclear envelope lumen // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded /// 0030425 // dendrite // inferred from direct assay /// 0031965 // nuclear membrane // not recorded /// 0031965 // nuclear membrane // inferred from sequence or structural similarity /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from direct assay 0004051 // arachidonate 5-lipoxygenase activity // inferred from mutant phenotype /// 0004051 // arachidonate 5-lipoxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0016165 // lipoxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368777_at NM_022622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022622.1 /DB_XREF=gi:12018307 /GEN=Bard1 /FEA=FLmRNA /CNT=3 /TID=Rn.48735.1 /TIER=FL /STK=3 /UG=Rn.48735 /LL=64557 /DEF=Rattus norvegicus BRCA1-associated RING domain protein 1 (Bard1), mRNA. /PROD=BRCA1-associated RING domain protein 1 /FL=gb:AF182946.1 gb:NM_022622.1 NM_022622 BRCA1 associated RING domain 1 Bard1 64557 NM_022622 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0042325 // regulation of phosphorylation // not recorded /// 0042325 // regulation of phosphorylation // inferred from sequence or structural similarity /// 0042325 // regulation of phosphorylation // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from direct assay /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0046826 // negative regulation of protein export from nucleus // not recorded /// 0046826 // negative regulation of protein export from nucleus // inferred from sequence or structural similarity /// 0046826 // negative regulation of protein export from nucleus // inferred from electronic annotation /// 0085020 // protein K6-linked ubiquitination // not recorded /// 0085020 // protein K6-linked ubiquitination // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0031436 // BRCA1-BARD1 complex // not recorded /// 0031436 // BRCA1-BARD1 complex // inferred from sequence or structural similarity /// 0031436 // BRCA1-BARD1 complex // inferred from electronic annotation /// 0070531 // BRCA1-A complex // inferred from electronic annotation /// 0070531 // BRCA1-A complex // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1368778_at NM_017206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017206.1 /DB_XREF=gi:8394317 /GEN=Slc6a6 /FEA=FLmRNA /CNT=3 /TID=Rn.9968.1 /TIER=FL /STK=3 /UG=Rn.9968 /LL=29464 /DEF=Rattus norvegicus Solute carrier 6 ,member 6 (taurine transporter) (Slc6a6), mRNA. /PROD=taurinebeta-alanine transporter /FL=gb:M96601.1 gb:NM_017206.1 NM_017206 solute carrier family 6 (neurotransmitter transporter, taurine), member 6 Slc6a6 29464 NM_017206 0001762 // beta-alanine transport // not recorded /// 0003333 // amino acid transmembrane transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded /// 0015734 // taurine transport // inferred from mutant phenotype /// 0015734 // taurine transport // not recorded /// 0015734 // taurine transport // inferred from electronic annotation /// 0055085 // transmembrane transport // not recorded 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001761 // beta-alanine transmembrane transporter activity // not recorded /// 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0005368 // taurine transmembrane transporter activity // not recorded /// 0005368 // taurine transmembrane transporter activity // inferred from electronic annotation /// 0005369 // taurine:sodium symporter activity // inferred from direct assay /// 0005369 // taurine:sodium symporter activity // inferred from electronic annotation /// 0015171 // amino acid transmembrane transporter activity // not recorded /// 0015293 // symporter activity // inferred from electronic annotation /// 0030977 // taurine binding // inferred from direct assay 1368779_a_at NM_012770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012770.1 /DB_XREF=gi:6980997 /GEN=Gucy1b2 /FEA=FLmRNA /CNT=3 /TID=Rn.10933.1 /TIER=FL /STK=3 /UG=Rn.10933 /LL=25206 /DEF=Rattus norvegicus Guanylate cyclase, soluble, beta 2 (GTP pyrophosphate - lyase) (Gucy1b2), mRNA. /PROD=guanylate cyclase, soluble, beta 2 (GTPpyrophosphate - lyase) /FL=gb:AY004153.1 gb:NM_012770.1 gb:M57507.1 NM_012770 guanylate cyclase 1, soluble, beta 2 Gucy1b2 25206 NM_012770 0006182 // cGMP biosynthetic process // inferred from electronic annotation /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0043167 // ion binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1368780_at NM_013108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013108.1 /DB_XREF=gi:6978462 /GEN=Adrb3 /FEA=FLmRNA /CNT=3 /TID=Rn.10100.1 /TIER=FL /STK=3 /UG=Rn.10100 /LL=25645 /DEF=Rattus norvegicus Adrenergic receptor, beta 3 (Adrb3), mRNA. /PROD=adrenergic receptor, beta 3 /FL=gb:NM_013108.1 gb:M74716.1 NM_013108 adrenergic, beta-3-, receptor Adrb3 25645 NM_013108 0002024 // diet induced thermogenesis // not recorded /// 0002025 // vasodilation by norepinephrine-epinephrine involved in regulation of systemic arterial blood pressure // not recorded /// 0002032 // desensitization of G-protein coupled receptor protein signaling pathway by arrestin // not recorded /// 0006898 // receptor-mediated endocytosis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from direct assay /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007190 // activation of adenylate cyclase activity // not recorded /// 0007190 // activation of adenylate cyclase activity // inferred from sequence or structural similarity /// 0007190 // activation of adenylate cyclase activity // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0009409 // response to cold // inferred from expression pattern /// 0009409 // response to cold // not recorded /// 0031649 // heat generation // not recorded /// 0040015 // negative regulation of multicellular organism growth // not recorded /// 0042755 // eating behavior // inferred from direct assay /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from sequence or structural similarity /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043235 // receptor complex // not recorded /// 0043235 // receptor complex // inferred from sequence or structural similarity /// 0043235 // receptor complex // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004935 // adrenergic receptor activity // inferred from electronic annotation /// 0004939 // beta-adrenergic receptor activity // inferred from electronic annotation /// 0004939 // beta-adrenergic receptor activity // not recorded /// 0004939 // beta-adrenergic receptor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015052 // beta3-adrenergic receptor activity // not recorded /// 0015052 // beta3-adrenergic receptor activity // inferred from sequence or structural similarity /// 0015052 // beta3-adrenergic receptor activity // inferred from electronic annotation /// 0031699 // beta-3 adrenergic receptor binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0051379 // epinephrine binding // inferred from direct assay /// 0051380 // norepinephrine binding // inferred from direct assay /// 0051380 // norepinephrine binding // not recorded /// 0051380 // norepinephrine binding // inferred from sequence or structural similarity /// 0051380 // norepinephrine binding // inferred from electronic annotation 1368781_at NM_130824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130824.1 /DB_XREF=gi:18677758 /GEN=Rasgrp4 /FEA=FLmRNA /CNT=3 /TID=Rn.81227.1 /TIER=FL /STK=3 /UG=Rn.81227 /DEF=Rattus norvegicus RAS guanyl releasing protein 4 (Rasgrp4), mRNA. /PROD=RAS guanyl releasing protein 4 /FL=gb:NM_130824.1 gb:AF465264.1 gb:AF465263.1 NM_130824 RAS guanyl releasing protein 4 Rasgrp4 170668 NM_130824 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from sequence or structural similarity /// 0009991 // response to extracellular stimulus // not recorded /// 0009991 // response to extracellular stimulus // inferred from sequence or structural similarity /// 0016049 // cell growth // not recorded /// 0016049 // cell growth // inferred from sequence or structural similarity /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from sequence or structural similarity /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from sequence or structural similarity /// 0005625 // soluble fraction // not recorded /// 0005625 // soluble fraction // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005088 // Ras guanyl-nucleotide exchange factor activity // not recorded /// 0005088 // Ras guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368782_at NM_019348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019348.1 /DB_XREF=gi:11225271 /GEN=Sstr2 /FEA=FLmRNA /CNT=3 /TID=Rn.9929.1 /TIER=FL /STK=3 /UG=Rn.9929 /LL=54305 /DEF=Rattus norvegicus somatostatin receptor subtype 2 (Sstr2), mRNA. /PROD=somatostatin receptor subtype 2 /FL=gb:M96817.1 gb:M93273.1 gb:NM_019348.1 NM_019348 somatostatin receptor 2 Sstr2 54305 NM_019348 0006937 // regulation of muscle contraction // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007268 // synaptic transmission // not recorded /// 0007283 // spermatogenesis // inferred from expression pattern /// 0021549 // cerebellum development // inferred from expression pattern /// 0030432 // peristalsis // inferred from mutant phenotype /// 0030900 // forebrain development // inferred from expression pattern /// 0042594 // response to starvation // inferred from expression pattern /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern /// 0071392 // cellular response to estradiol stimulus // inferred from expression pattern 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004994 // somatostatin receptor activity // inferred from direct assay /// 0004994 // somatostatin receptor activity // not recorded /// 0004994 // somatostatin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0030165 // PDZ domain binding // not recorded /// 0030165 // PDZ domain binding // inferred from electronic annotation 1368783_at NM_022610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022610.1 /DB_XREF=gi:12018285 /GEN=Ailim /FEA=FLmRNA /CNT=3 /TID=Rn.42901.1 /TIER=FL /STK=3 /UG=Rn.42901 /LL=64545 /DEF=Rattus norvegicus activation-inducible lymphocyte immunomediatory molecule (Ailim), mRNA. /PROD=activation-inducible lymphocyte immunomediatorymolecule /FL=gb:NM_022610.1 gb:AB023134.1 NM_022610 inducible T-cell co-stimulator Icos 64545 NM_022610 0002517 // T cell tolerance induction // inferred from mutant phenotype /// 0016337 // cell-cell adhesion // inferred from direct assay /// 0031295 // T cell costimulation // inferred from direct assay 0005887 // integral to plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1368784_at NM_133400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133400.1 /DB_XREF=gi:19173759 /GEN=Acf /FEA=FLmRNA /CNT=3 /TID=Rn.81027.1 /TIER=FL /STK=3 /UG=Rn.81027 /DEF=Rattus norvegicus Apobec-1 complementation factor, APOBEC-1 stimulating protein (Acf), mRNA. /PROD=Apobec-1 complementation factor, APOBEC-1stimulating protein /FL=gb:NM_133400.1 gb:AY028945.1 gb:AF290984.1 NM_133400 APOBEC1 complementation factor A1cf 170912 NM_133400 0006397 // mRNA processing // inferred from electronic annotation /// 0016554 // cytidine to uridine editing // traceable author statement /// 0016556 // mRNA modification // inferred from mutant phenotype /// 0016556 // mRNA modification // non-traceable author statement /// 0050821 // protein stabilization // not recorded /// 0050821 // protein stabilization // inferred from sequence or structural similarity /// 0050821 // protein stabilization // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005720 // nuclear heterochromatin // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0030895 // apolipoprotein B mRNA editing enzyme complex // not recorded /// 0030895 // apolipoprotein B mRNA editing enzyme complex // inferred from sequence or structural similarity /// 0030895 // apolipoprotein B mRNA editing enzyme complex // traceable author statement /// 0030895 // apolipoprotein B mRNA editing enzyme complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // not recorded /// 0003725 // double-stranded RNA binding // inferred from sequence or structural similarity /// 0003727 // single-stranded RNA binding // not recorded /// 0003727 // single-stranded RNA binding // inferred from sequence or structural similarity /// 0003727 // single-stranded RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from direct assay /// 0004131 // cytosine deaminase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1368785_a_at NM_019334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019334.1 /DB_XREF=gi:9506974 /GEN=Pitx2 /FEA=FLmRNA /CNT=3 /TID=Rn.17591.1 /TIER=FL /STK=3 /UG=Rn.17591 /LL=54284 /DEF=Rattus norvegicus paired-like homeodomain transcription factor 2 (Pitx2), mRNA. /PROD=paired-like homeodomain transcription factor 2 /FL=gb:NM_019334.1 gb:AF039832.1 NM_019334 paired-like homeodomain 2 Pitx2 54284 NM_001042505 /// NM_019334 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0002074 // extraocular skeletal muscle development // inferred from electronic annotation /// 0002074 // extraocular skeletal muscle development // not recorded /// 0003350 // pulmonary myocardium development // inferred from electronic annotation /// 0003350 // pulmonary myocardium development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007519 // skeletal muscle tissue development // not recorded /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // not recorded /// 0009653 // anatomical structure morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0021983 // pituitary gland development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0030334 // regulation of cell migration // not recorded /// 0031076 // embryonic camera-type eye development // inferred from electronic annotation /// 0031076 // embryonic camera-type eye development // not recorded /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042476 // odontogenesis // inferred from electronic annotation /// 0042476 // odontogenesis // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // not recorded /// 0055009 // atrial cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055009 // atrial cardiac muscle tissue morphogenesis // not recorded /// 0055123 // digestive system development // inferred from electronic annotation /// 0055123 // digestive system development // not recorded /// 0060460 // left lung morphogenesis // inferred from electronic annotation /// 0060460 // left lung morphogenesis // not recorded /// 0060577 // pulmonary vein morphogenesis // inferred from electronic annotation /// 0060577 // pulmonary vein morphogenesis // not recorded /// 0060578 // superior vena cava morphogenesis // inferred from electronic annotation /// 0060578 // superior vena cava morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1368786_a_at NM_030831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030831.1 /DB_XREF=gi:13540627 /GEN=Gpcr12 /FEA=FLmRNA /CNT=3 /TID=Rn.10218.1 /TIER=FL /STK=3 /UG=Rn.10218 /LL=80840 /DEF=Rattus norvegicus G-protein coupled receptor 12 (Gpcr12), mRNA. /PROD=G-protein coupled receptor 12 /FL=gb:NM_030831.1 gb:U12184.1 NM_030831 G protein-coupled receptor 12 Gpr12 80840 NM_001037295 /// NM_030831 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001619 // lysosphingolipid and lysophosphatidic acid receptor activity // inferred from electronic annotation /// 0001619 // lysosphingolipid and lysophosphatidic acid receptor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1368787_at NM_133316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133316.1 /DB_XREF=gi:18959261 /GEN=Mutyh /FEA=FLmRNA /CNT=3 /TID=Rn.82688.1 /TIER=FL /STK=3 /UG=Rn.82688 /DEF=Rattus norvegicus mutY homolog (E. coli) (Mutyh), mRNA. /PROD=mutY homolog (E. coli) /FL=gb:AF478683.1 gb:NM_133316.1 NM_133316 mutY homolog (E. coli) Mutyh 170841 NM_133316 0006281 // DNA repair // inferred from electronic annotation /// 0006284 // base-excision repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0045007 // depurination // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0019104 // DNA N-glycosylase activity // inferred from direct assay /// 0019104 // DNA N-glycosylase activity // not recorded /// 0019104 // DNA N-glycosylase activity // inferred from electronic annotation /// 0032405 // MutLalpha complex binding // not recorded /// 0032406 // MutLbeta complex binding // not recorded /// 0032407 // MutSalpha complex binding // not recorded /// 0032408 // MutSbeta complex binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 1368788_at NM_019164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019164.1 /DB_XREF=gi:9506482 /GEN=Chad /FEA=FLmRNA /CNT=3 /TID=Rn.9899.1 /TIER=FL /STK=3 /UG=Rn.9899 /LL=29195 /DEF=Rattus norvegicus chondroadherin (Chad), mRNA. /PROD=chondroadherin /FL=gb:NM_019164.1 gb:AF004953.1 NM_019164 chondroadherin Chad 29195 NM_019164 0001502 // cartilage condensation // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1368789_at NM_020072 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020072.1 /DB_XREF=gi:9910501 /GEN=Ppal /FEA=FLmRNA /CNT=3 /TID=Rn.40121.1 /TIER=FL /STK=3 /UG=Rn.40121 /LL=56780 /DEF=Rattus norvegicus prostatic acid phosphatase (rPAP) (Ppal), mRNA. /PROD=prostatic acid phosphatase (rPAP) /FL=gb:M32397.1 gb:NM_020072.1 NM_020072 acid phosphatase, prostate Acpp 56780 NM_001134901 /// NM_020072 0016311 // dephosphorylation // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005771 // multivesicular body // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay /// 0031985 // Golgi cisterna // inferred from direct assay /// 0045177 // apical part of cell // inferred from direct assay 0003993 // acid phosphatase activity // inferred from direct assay /// 0003993 // acid phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0033265 // choline binding // inferred from direct assay 1368790_at NM_133617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133617.1 /DB_XREF=gi:19424335 /GEN=Serpina10 /FEA=FLmRNA /CNT=3 /TID=Rn.10502.1 /TIER=FL /STK=3 /UG=Rn.10502 /LL=171154 /DEF=Rattus norvegicus serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10 (Serpina10), mRNA. /PROD=serine (or cysteine) proteinase inhibitor, cladeA (alpha-1 antiproteinase, antitrypsin), member 10 /FL=gb:NM_133617.1 gb:U55765.1 NM_133617 serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10 Serpina10 171154 NM_133617 0042246 // tissue regeneration // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1368791_at NM_012617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012617.1 /DB_XREF=gi:6981307 /GEN=Oprd1 /FEA=FLmRNA /CNT=3 /TID=Rn.10310.1 /TIER=FL /STK=3 /UG=Rn.10310 /LL=24613 /DEF=Rattus norvegicus Opioid receptor delta 1 (Oprd1), mRNA. /PROD=opioid receptor delta 1 /FL=gb:U00475.1 gb:NM_012617.1 gb:D16348.1 NM_012617 opioid receptor, delta 1 Oprd1 24613 NM_012617 0000060 // protein import into nucleus, translocation // inferred from electronic annotation /// 0000060 // protein import into nucleus, translocation // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007191 // activation of adenylate cyclase activity by dopamine receptor signaling pathway // not recorded /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // not recorded /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0051927 // negative regulation of calcium ion transport via voltage-gated calcium channel activity // inferred from mutant phenotype /// 0051930 // regulation of sensory perception of pain // inferred from direct assay /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0031982 // vesicle // inferred from direct assay /// 0032590 // dendrite membrane // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004985 // opioid receptor activity // inferred from electronic annotation /// 0004986 // delta-opioid receptor activity // inferred from direct assay /// 0004986 // delta-opioid receptor activity // not recorded /// 0004986 // delta-opioid receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368792_at NM_019163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019163.1 /DB_XREF=gi:9507000 /GEN=Psen1 /FEA=FLmRNA /CNT=3 /TID=Rn.44440.1 /TIER=FL /STK=3 /UG=Rn.44440 /LL=29192 /DEF=Rattus norvegicus presenilin 1 (Psen1), mRNA. /PROD=presenilin 1 /FL=gb:D82578.1 gb:D82363.1 gb:NM_019163.1 NM_019163 presenilin 1 Psen1 29192 NM_019163 0000045 // autophagic vacuole assembly // inferred from electronic annotation /// 0000045 // autophagic vacuole assembly // not recorded /// 0000186 // activation of MAPKK activity // inferred from electronic annotation /// 0000186 // activation of MAPKK activity // not recorded /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001708 // cell fate specification // inferred from electronic annotation /// 0001708 // cell fate specification // not recorded /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001756 // somitogenesis // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // not recorded /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0001947 // heart looping // inferred from electronic annotation /// 0001947 // heart looping // not recorded /// 0002244 // hemopoietic progenitor cell differentiation // inferred from electronic annotation /// 0002244 // hemopoietic progenitor cell differentiation // not recorded /// 0002286 // T cell activation involved in immune response // inferred from electronic annotation /// 0002286 // T cell activation involved in immune response // not recorded /// 0002573 // myeloid leukocyte differentiation // inferred from electronic annotation /// 0002573 // myeloid leukocyte differentiation // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0006486 // protein glycosylation // not recorded /// 0006509 // membrane protein ectodomain proteolysis // inferred from mutant phenotype /// 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0006509 // membrane protein ectodomain proteolysis // inferred from sequence or structural similarity /// 0006509 // membrane protein ectodomain proteolysis // inferred from electronic annotation /// 0006839 // mitochondrial transport // inferred from electronic annotation /// 0006839 // mitochondrial transport // not recorded /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0006914 // autophagy // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from direct assay /// 0006916 // anti-apoptosis // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007176 // regulation of epidermal growth factor receptor activity // inferred from electronic annotation /// 0007176 // regulation of epidermal growth factor receptor activity // not recorded /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007219 // Notch signaling pathway // not recorded /// 0007220 // Notch receptor processing // inferred from electronic annotation /// 0007220 // Notch receptor processing // not recorded /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007611 // learning or memory // not recorded /// 0007611 // learning or memory // inferred from electronic annotation /// 0007613 // memory // inferred from electronic annotation /// 0007613 // memory // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0015031 // protein transport // not recorded /// 0015813 // L-glutamate transport // inferred from electronic annotation /// 0015813 // L-glutamate transport // not recorded /// 0015871 // choline transport // inferred from electronic annotation /// 0015871 // choline transport // not recorded /// 0016080 // synaptic vesicle targeting // inferred from electronic annotation /// 0016080 // synaptic vesicle targeting // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0016485 // protein processing // inferred from direct assay /// 0016485 // protein processing // not recorded /// 0016485 // protein processing // inferred from sequence or structural similarity /// 0016485 // protein processing // inferred from electronic annotation /// 0021795 // cerebral cortex cell migration // inferred from electronic annotation /// 0021795 // cerebral cortex cell migration // not recorded /// 0021870 // Cajal-Retzius cell differentiation // inferred from electronic annotation /// 0021870 // Cajal-Retzius cell differentiation // not recorded /// 0021904 // dorsal/ventral neural tube patterning // inferred from electronic annotation /// 0021904 // dorsal/ventral neural tube patterning // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0022008 // neurogenesis // inferred from electronic annotation /// 0022008 // neurogenesis // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0031293 // membrane protein intracellular domain proteolysis // not recorded /// 0032469 // endoplasmic reticulum calcium ion homeostasis // not recorded /// 0032469 // endoplasmic reticulum calcium ion homeostasis // inferred from electronic annotation /// 0035282 // segmentation // not recorded /// 0035282 // segmentation // inferred from electronic annotation /// 0040011 // locomotion // inferred from electronic annotation /// 0040011 // locomotion // not recorded /// 0042325 // regulation of phosphorylation // inferred from electronic annotation /// 0042325 // regulation of phosphorylation // not recorded /// 0042462 // eye photoreceptor cell development // non-traceable author statement /// 0042640 // anagen // inferred from electronic annotation /// 0042640 // anagen // not recorded /// 0042987 // amyloid precursor protein catabolic process // inferred from electronic annotation /// 0042987 // amyloid precursor protein catabolic process // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043085 // positive regulation of catalytic activity // not recorded /// 0043085 // positive regulation of catalytic activity // inferred from sequence or structural similarity /// 0043085 // positive regulation of catalytic activity // inferred from electronic annotation /// 0043393 // regulation of protein binding // inferred from electronic annotation /// 0043393 // regulation of protein binding // not recorded /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // not recorded /// 0044267 // cellular protein metabolic process // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // not recorded /// 0048538 // thymus development // inferred from electronic annotation /// 0048538 // thymus development // not recorded /// 0048666 // neuron development // inferred from electronic annotation /// 0048666 // neuron development // not recorded /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // not recorded /// 0048854 // brain morphogenesis // inferred from electronic annotation /// 0048854 // brain morphogenesis // not recorded /// 0050435 // beta-amyloid metabolic process // inferred from electronic annotation /// 0050435 // beta-amyloid metabolic process // not recorded /// 0050673 // epithelial cell proliferation // inferred from electronic annotation /// 0050673 // epithelial cell proliferation // not recorded /// 0050771 // negative regulation of axonogenesis // inferred from electronic annotation /// 0050771 // negative regulation of axonogenesis // not recorded /// 0050820 // positive regulation of coagulation // inferred from electronic annotation /// 0050820 // positive regulation of coagulation // not recorded /// 0050852 // T cell receptor signaling pathway // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // not recorded /// 0051402 // neuron apoptosis // not recorded /// 0051402 // neuron apoptosis // inferred from electronic annotation /// 0051563 // smooth endoplasmic reticulum calcium ion homeostasis // inferred from electronic annotation /// 0051563 // smooth endoplasmic reticulum calcium ion homeostasis // not recorded /// 0051604 // protein maturation // not recorded /// 0051604 // protein maturation // inferred from electronic annotation /// 0051605 // protein maturation by peptide bond cleavage // inferred from electronic annotation /// 0051605 // protein maturation by peptide bond cleavage // not recorded /// 0051966 // regulation of synaptic transmission, glutamatergic // inferred from electronic annotation /// 0051966 // regulation of synaptic transmission, glutamatergic // not recorded /// 0060075 // regulation of resting membrane potential // inferred from electronic annotation /// 0060075 // regulation of resting membrane potential // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0000776 // kinetochore // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005640 // nuclear outer membrane // inferred from electronic annotation /// 0005640 // nuclear outer membrane // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005790 // smooth endoplasmic reticulum // not recorded /// 0005791 // rough endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0030425 // dendrite // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0030426 // growth cone // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0031594 // neuromuscular junction // inferred from direct assay /// 0031965 // nuclear membrane // not recorded /// 0035253 // ciliary rootlet // inferred from electronic annotation /// 0035253 // ciliary rootlet // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043198 // dendritic shaft // inferred from electronic annotation /// 0043198 // dendritic shaft // not recorded /// 0043227 // membrane-bounded organelle // inferred from electronic annotation /// 0043227 // membrane-bounded organelle // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0070765 // gamma-secretase complex // not recorded 0004175 // endopeptidase activity // inferred from direct assay /// 0004175 // endopeptidase activity // not recorded /// 0004175 // endopeptidase activity // inferred from electronic annotation /// 0005262 // calcium channel activity // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0008233 // peptidase activity // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // not recorded /// 0045296 // cadherin binding // inferred from electronic annotation /// 0045296 // cadherin binding // not recorded 1368793_at NM_017296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017296.1 /DB_XREF=gi:8393651 /GEN=Kcnj2 /FEA=FLmRNA /CNT=3 /TID=Rn.44415.1 /TIER=FL /STK=3 /UG=Rn.44415 /LL=29712 /DEF=Rattus norvegicus potassium inwardly-rectifying channel, subfamily J, member 2 (Kcnj2), mRNA. /PROD=potassium inwardly-rectifying channel, subfamilyJ, member 2 /FL=gb:L48490.1 gb:NM_017296.1 gb:AF021137.1 NM_017296 potassium inwardly-rectifying channel, subfamily J, member 2 Kcnj2 29712 NM_017296 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1368794_at NM_020076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020076.1 /DB_XREF=gi:9910255 /GEN=Haao /FEA=FLmRNA /CNT=3 /TID=Rn.48675.1 /TIER=FL /STK=3 /UG=Rn.48675 /LL=56823 /DEF=Rattus norvegicus 3-hydroxyanthranilate 3,4-dioxygenase (Haao), mRNA. /PROD=3-hydroxyanthranilate 3,4-dioxygenase /FL=gb:NM_020076.1 gb:D44494.1 NM_020076 3-hydroxyanthranilate 3,4-dioxygenase Haao 56823 NM_020076 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0010043 // response to zinc ion // inferred from electronic annotation /// 0010043 // response to zinc ion // not recorded /// 0019363 // pyridine nucleotide biosynthetic process // inferred from electronic annotation /// 0046686 // response to cadmium ion // inferred from electronic annotation /// 0046686 // response to cadmium ion // not recorded /// 0046874 // quinolinate metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0070050 // neuron homeostasis // inferred from electronic annotation /// 0070050 // neuron homeostasis // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005625 // soluble fraction // not recorded /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0031966 // mitochondrial membrane // inferred from direct assay 0000334 // 3-hydroxyanthranilate 3,4-dioxygenase activity // inferred from direct assay /// 0000334 // 3-hydroxyanthranilate 3,4-dioxygenase activity // not recorded /// 0000334 // 3-hydroxyanthranilate 3,4-dioxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from direct assay /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008198 // ferrous iron binding // inferred from electronic annotation /// 0008198 // ferrous iron binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0019825 // oxygen binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1368795_at NM_023100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023100.1 /DB_XREF=gi:12831218 /GEN=Gpr66 /FEA=FLmRNA /CNT=3 /TID=Rn.54457.1 /TIER=FL /STK=3 /UG=Rn.54457 /LL=65276 /DEF=Rattus norvegicus G protein-coupled receptor FM-3 (Gpr66), mRNA. /PROD=G protein-coupled receptor FM-3 /FL=gb:AF242873.1 gb:AB038649.1 gb:NM_023100.1 NM_023100 neuromedin U receptor 1 Nmur1 65276 NM_023100 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006821 // chloride transport // inferred from electronic annotation /// 0006821 // chloride transport // not recorded /// 0006939 // smooth muscle contraction // inferred from electronic annotation /// 0006939 // smooth muscle contraction // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // not recorded /// 0007202 // activation of phospholipase C activity // not recorded /// 0007202 // activation of phospholipase C activity // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0019226 // transmission of nerve impulse // inferred from electronic annotation /// 0019226 // transmission of nerve impulse // not recorded /// 0019722 // calcium-mediated signaling // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // not recorded /// 0048016 // inositol phosphate-mediated signaling // inferred from electronic annotation /// 0048016 // inositol phosphate-mediated signaling // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0001607 // neuromedin U receptor activity // inferred from electronic annotation /// 0001607 // neuromedin U receptor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0008188 // neuropeptide receptor activity // not recorded /// 0008188 // neuropeptide receptor activity // inferred from electronic annotation 1368796_at NM_023992 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023992.1 /DB_XREF=gi:13027455 /GEN=Gpr54 /FEA=FLmRNA /CNT=3 /TID=Rn.48681.1 /TIER=FL /STK=3 /UG=Rn.48681 /LL=78976 /DEF=Rattus norvegicus G protein-coupled receptor 54 (Gpr54), mRNA. /PROD=orphan G protein-coupled receptor GPR54 /FL=gb:AF115516.1 gb:AB051066.1 gb:NM_023992.1 NM_023992 KISS1 receptor Kiss1r 78976 NM_023992 0000186 // activation of MAPKK activity // inferred from direct assay /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // not recorded /// 0019722 // calcium-mediated signaling // inferred from mutant phenotype /// 0030336 // negative regulation of cell migration // not recorded /// 0046887 // positive regulation of hormone secretion // inferred from direct assay /// 0050482 // arachidonic acid secretion // inferred from direct assay /// 0050806 // positive regulation of synaptic transmission // inferred from mutant phenotype /// 0051496 // positive regulation of stress fiber assembly // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008188 // neuropeptide receptor activity // inferred from electronic annotation /// 0008188 // neuropeptide receptor activity // not recorded /// 0008528 // peptide receptor activity, G-protein coupled // inferred from physical interaction /// 0008528 // peptide receptor activity, G-protein coupled // not recorded /// 0008528 // peptide receptor activity, G-protein coupled // inferred from electronic annotation /// 0042923 // neuropeptide binding // inferred from direct assay 1368797_at NM_022941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022941.1 /DB_XREF=gi:12621107 /GEN=Nr1i3 /FEA=FLmRNA /CNT=3 /TID=Rn.48759.1 /TIER=FL /STK=3 /UG=Rn.48759 /LL=65035 /DEF=Rattus norvegicus strain Fischer nuclear receptor (CAR) (Nr1i3), mRNA. /PROD=strain Fischer nuclear receptor (CAR) /FL=gb:NM_022941.1 gb:AF133095.1 gb:AF133094.1 NM_022941 nuclear receptor subfamily 1, group I, member 3 Nr1i3 65035 NM_022941 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368798_at NM_023094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023094.1 /DB_XREF=gi:12831210 /GEN=LOC65270 /FEA=FLmRNA /CNT=3 /TID=Rn.53997.1 /TIER=FL /STK=3 /UG=Rn.53997 /LL=65270 /DEF=Rattus norvegicus N-acetylgalactosaminyltransferase A blood group-like enzyme (LOC65270), mRNA. /PROD=N-acetylgalactosaminyltransferase A bloodgroup-like enzyme /FL=gb:AF264018.2 gb:NM_023094.1 gb:AF469945.1 NM_023094 ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) Abo 65270 NM_023094 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0042742 // defense response to bacterium // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0004380 // glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity // inferred from direct assay /// 0004380 // glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0004381 // fucosylgalactoside 3-alpha-galactosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368799_at NM_022274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022274.1 /DB_XREF=gi:11560096 /GEN=Birc5 /FEA=FLmRNA /CNT=3 /TID=Rn.54471.1 /TIER=FL /STK=3 /UG=Rn.54471 /LL=64041 /DEF=Rattus norvegicus baculoviral IAP repeat-containing 5 (survivin) (Birc5), mRNA. /PROD=baculoviral IAP repeat-containing 5 (survivin) /FL=gb:NM_022274.1 gb:AF276775.1 NM_022274 baculoviral IAP repeat-containing 5 Birc5 64041 NM_022274 0000086 // G2/M transition of mitotic cell cycle // not recorded /// 0000086 // G2/M transition of mitotic cell cycle // inferred from sequence or structural similarity /// 0000226 // microtubule cytoskeleton organization // not recorded /// 0000910 // cytokinesis // not recorded /// 0000910 // cytokinesis // inferred from sequence or structural similarity /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0031503 // protein complex localization // not recorded /// 0031503 // protein complex localization // inferred from sequence or structural similarity /// 0031536 // positive regulation of exit from mitosis // not recorded /// 0031536 // positive regulation of exit from mitosis // inferred from sequence or structural similarity /// 0031577 // spindle checkpoint // not recorded /// 0031577 // spindle checkpoint // inferred from sequence or structural similarity /// 0042493 // response to drug // inferred from expression pattern /// 0043154 // negative regulation of caspase activity // not recorded /// 0043154 // negative regulation of caspase activity // inferred from sequence or structural similarity /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045787 // positive regulation of cell cycle // inferred from mutant phenotype /// 0045931 // positive regulation of mitotic cell cycle // not recorded /// 0045931 // positive regulation of mitotic cell cycle // inferred from sequence or structural similarity /// 0051301 // cell division // not recorded /// 0051301 // cell division // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation /// 0051303 // establishment of chromosome localization // not recorded /// 0051303 // establishment of chromosome localization // inferred from sequence or structural similarity /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern 0000228 // nuclear chromosome // not recorded /// 0000775 // chromosome, centromeric region // not recorded /// 0000775 // chromosome, centromeric region // inferred from sequence or structural similarity /// 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005814 // centriole // not recorded /// 0005814 // centriole // inferred from sequence or structural similarity /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded /// 0005876 // spindle microtubule // inferred from sequence or structural similarity /// 0005881 // cytoplasmic microtubule // not recorded /// 0005881 // cytoplasmic microtubule // inferred from sequence or structural similarity /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030496 // midbody // not recorded /// 0030496 // midbody // inferred from sequence or structural similarity /// 0031021 // interphase microtubule organizing center // not recorded /// 0031021 // interphase microtubule organizing center // inferred from sequence or structural similarity /// 0032133 // chromosome passenger complex // not recorded /// 0032133 // chromosome passenger complex // inferred from sequence or structural similarity 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // not recorded /// 0008017 // microtubule binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0008536 // Ran GTPase binding // not recorded /// 0015631 // tubulin binding // not recorded /// 0015631 // tubulin binding // inferred from sequence or structural similarity /// 0019899 // enzyme binding // not recorded /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0043027 // caspase inhibitor activity // not recorded /// 0043027 // caspase inhibitor activity // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0048037 // cofactor binding // not recorded /// 0048037 // cofactor binding // inferred from sequence or structural similarity /// 0051087 // chaperone binding // not recorded 1368800_at NM_053353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053353.1 /DB_XREF=gi:16758075 /GEN=LOC84349 /FEA=FLmRNA /CNT=3 /TID=Rn.44218.1 /TIER=FL /STK=3 /UG=Rn.44218 /LL=84349 /DEF=Rattus norvegicus CD40 ligand (LOC84349), mRNA. /PROD=CD40 ligand /FL=gb:NM_053353.1 gb:AF116582.1 gb:AF013985.1 NM_053353 CD40 ligand Cd40lg 84349 NM_053353 0002839 // positive regulation of immune response to tumor cell // inferred from direct assay /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006954 // inflammatory response // not recorded /// 0006954 // inflammatory response // inferred from sequence or structural similarity /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0030168 // platelet activation // not recorded /// 0030168 // platelet activation // inferred from sequence or structural similarity /// 0030168 // platelet activation // inferred from electronic annotation /// 0030183 // B cell differentiation // inferred from electronic annotation /// 0030183 // B cell differentiation // not recorded /// 0030890 // positive regulation of B cell proliferation // inferred from direct assay /// 0032729 // positive regulation of interferon-gamma production // inferred from direct assay /// 0032733 // positive regulation of interleukin-10 production // inferred from direct assay /// 0032735 // positive regulation of interleukin-12 production // inferred from direct assay /// 0032735 // positive regulation of interleukin-12 production // not recorded /// 0032735 // positive regulation of interleukin-12 production // inferred from electronic annotation /// 0042100 // B cell proliferation // not recorded /// 0042100 // B cell proliferation // inferred from sequence or structural similarity /// 0042100 // B cell proliferation // inferred from electronic annotation /// 0045190 // isotype switching // inferred from electronic annotation /// 0045190 // isotype switching // not recorded /// 0045348 // positive regulation of MHC class II biosynthetic process // inferred from direct assay /// 0048305 // immunoglobulin secretion // not recorded /// 0048305 // immunoglobulin secretion // inferred from electronic annotation /// 0051023 // regulation of immunoglobulin secretion // inferred from electronic annotation /// 0051023 // regulation of immunoglobulin secretion // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005174 // CD40 receptor binding // not recorded /// 0005174 // CD40 receptor binding // inferred from sequence or structural similarity /// 0005174 // CD40 receptor binding // inferred from electronic annotation 1368801_at NM_053342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053342.1 /DB_XREF=gi:16758061 /GEN=Idax /FEA=FLmRNA /CNT=3 /TID=Rn.64309.1 /TIER=FL /STK=3 /UG=Rn.64309 /LL=83824 /DEF=Rattus norvegicus inhibitor of the Dvl and Axin complex (Idax), mRNA. /PROD=inhibitor of the Dvl and Axin complex /FL=gb:NM_053342.1 gb:AF272158.1 NM_053342 CXXC finger 4 Cxxc4 83824 NM_053342 0016055 // Wnt receptor signaling pathway // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0031410 // cytoplasmic vesicle // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0030165 // PDZ domain binding // not recorded /// 0030165 // PDZ domain binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368802_at NM_012625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012625.1 /DB_XREF=gi:6981373 /GEN=Pmch /FEA=FLmRNA /CNT=3 /TID=Rn.9675.1 /TIER=FL /STK=3 /UG=Rn.9675 /LL=24659 /DEF=Rattus norvegicus Pro-melanin-concentrating hormone (Pmch), mRNA. /PROD=pro-melanin-concentrating hormone /FL=gb:NM_012625.1 gb:M29712.1 NM_012625 pro-melanin-concentrating hormone Pmch 24659 NM_012625 0002027 // regulation of heart rate // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007595 // lactation // inferred from expression pattern /// 0007611 // learning or memory // traceable author statement /// 0007631 // feeding behavior // inferred from direct assay /// 0007631 // feeding behavior // not recorded /// 0007631 // feeding behavior // inferred from sequence or structural similarity /// 0007631 // feeding behavior // inferred from electronic annotation /// 0009409 // response to cold // inferred from mutant phenotype /// 0032227 // negative regulation of synaptic transmission, dopaminergic // inferred from direct assay /// 0042593 // glucose homeostasis // inferred from direct assay /// 0042756 // drinking behavior // inferred from direct assay /// 0045776 // negative regulation of blood pressure // inferred from direct assay /// 0046005 // positive regulation of circadian sleep/wake cycle, REM sleep // inferred from direct assay /// 0048168 // regulation of neuronal synaptic plasticity // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005179 // hormone activity // inferred from electronic annotation /// 0030354 // melanin-concentrating hormone activity // inferred from electronic annotation /// 0031777 // type 1 melanin-concentrating hormone receptor binding // inferred from direct assay 1368803_at NM_022583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022583.1 /DB_XREF=gi:12018233 /GEN=Insl6 /FEA=FLmRNA /CNT=3 /TID=Rn.48708.1 /TIER=FL /STK=3 /UG=Rn.48708 /LL=50546 /DEF=Rattus norvegicus insulin-like 6 (Insl6), mRNA. /PROD=insulin-like 6 /FL=gb:NM_022583.1 gb:AF159506.1 NM_022583 insulin-like 6 Insl6 50546 NM_022583 0000239 // pachytene // not recorded /// 0006915 // apoptosis // not recorded /// 0007283 // spermatogenesis // not recorded /// 0007286 // spermatid development // not recorded /// 0008584 // male gonad development // not recorded /// 0009566 // fertilization // not recorded /// 0030317 // sperm motility // not recorded /// 0035264 // multicellular organism growth // not recorded 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation 1368804_at NM_022196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022196.1 /DB_XREF=gi:11559967 /GEN=Lif /FEA=FLmRNA /CNT=3 /TID=Rn.44379.1 /TIER=FL /STK=3 /UG=Rn.44379 /LL=60584 /DEF=Rattus norvegicus leukemia inhibitory factor (Lif), mRNA. /PROD=leukemia inhibitory factor /FL=gb:AB010275.1 gb:NM_022196.1 gb:M32748.1 NM_022196 leukemia inhibitory factor Lif 60584 NM_022196 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0001974 // blood vessel remodeling // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0007566 // embryo implantation // inferred from electronic annotation /// 0007566 // embryo implantation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010976 // positive regulation of neuron projection development // inferred from direct assay /// 0016525 // negative regulation of angiogenesis // inferred from direct assay /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0019827 // stem cell maintenance // not recorded /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from expression pattern /// 0031100 // organ regeneration // inferred from mutant phenotype /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033138 // positive regulation of peptidyl-serine phosphorylation // not recorded /// 0042503 // tyrosine phosphorylation of Stat3 protein // not recorded /// 0042503 // tyrosine phosphorylation of Stat3 protein // inferred from electronic annotation /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // inferred from electronic annotation /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // not recorded /// 0045651 // positive regulation of macrophage differentiation // inferred from electronic annotation /// 0045651 // positive regulation of macrophage differentiation // not recorded /// 0045835 // negative regulation of meiosis // inferred from electronic annotation /// 0045835 // negative regulation of meiosis // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046697 // decidualization // inferred from electronic annotation /// 0046697 // decidualization // not recorded /// 0046888 // negative regulation of hormone secretion // inferred from electronic annotation /// 0046888 // negative regulation of hormone secretion // not recorded /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048286 // lung alveolus development // not recorded /// 0048644 // muscle organ morphogenesis // inferred from electronic annotation /// 0048644 // muscle organ morphogenesis // not recorded /// 0048666 // neuron development // inferred from electronic annotation /// 0048666 // neuron development // not recorded /// 0048708 // astrocyte differentiation // inferred from mutant phenotype /// 0048711 // positive regulation of astrocyte differentiation // inferred from electronic annotation /// 0048711 // positive regulation of astrocyte differentiation // not recorded /// 0048861 // leukemia inhibitory factor signaling pathway // inferred from electronic annotation /// 0048861 // leukemia inhibitory factor signaling pathway // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0051461 // positive regulation of adrenocorticotropin secretion // inferred from direct assay /// 0060041 // retina development in camera-type eye // inferred from direct assay /// 0060135 // maternal process involved in female pregnancy // inferred from electronic annotation /// 0060135 // maternal process involved in female pregnancy // not recorded /// 0060290 // transdifferentiation // inferred from mutant phenotype /// 0060426 // lung vasculature development // inferred from electronic annotation /// 0060426 // lung vasculature development // not recorded /// 0060463 // lung lobe morphogenesis // inferred from electronic annotation /// 0060463 // lung lobe morphogenesis // not recorded /// 0060707 // trophoblast giant cell differentiation // inferred from electronic annotation /// 0060707 // trophoblast giant cell differentiation // not recorded /// 0060708 // spongiotrophoblast differentiation // inferred from electronic annotation /// 0060708 // spongiotrophoblast differentiation // not recorded /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070373 // negative regulation of ERK1 and ERK2 cascade // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005146 // leukemia inhibitory factor receptor binding // inferred from mutant phenotype /// 0005146 // leukemia inhibitory factor receptor binding // not recorded /// 0005146 // leukemia inhibitory factor receptor binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded 1368805_at NM_019160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019160.1 /DB_XREF=gi:9507226 /GEN=Uts2 /FEA=FLmRNA /CNT=3 /TID=Rn.48886.1 /TIER=FL /STK=3 /UG=Rn.48886 /LL=29180 /DEF=Rattus norvegicus urotensin 2 (Uts2), mRNA. /PROD=urotensin 2 /FL=gb:NM_019160.1 gb:AF172174.1 NM_019160 urotensin 2 Uts2 29180 NM_019160 0001666 // response to hypoxia // inferred from expression pattern /// 0003077 // negative regulation of diuresis // inferred from direct assay /// 0003080 // negative regulation of natriuresis // inferred from direct assay /// 0003105 // negative regulation of glomerular filtration // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0010459 // negative regulation of heart rate // inferred from direct assay /// 0010460 // positive regulation of heart rate // inferred from direct assay /// 0010763 // positive regulation of fibroblast migration // inferred from direct assay /// 0010841 // positive regulation of circadian sleep/wake cycle, wakefulness // inferred from direct assay /// 0032224 // positive regulation of synaptic transmission, cholinergic // inferred from direct assay /// 0032967 // positive regulation of collagen biosynthetic process // inferred from direct assay /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0045597 // positive regulation of cell differentiation // inferred from direct assay /// 0045766 // positive regulation of angiogenesis // inferred from direct assay /// 0045776 // negative regulation of blood pressure // inferred from direct assay /// 0045777 // positive regulation of blood pressure // inferred from direct assay /// 0045909 // positive regulation of vasodilation // inferred from direct assay /// 0046005 // positive regulation of circadian sleep/wake cycle, REM sleep // inferred from direct assay /// 0046676 // negative regulation of insulin secretion // inferred from mutant phenotype /// 0048146 // positive regulation of fibroblast proliferation // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay 0005179 // hormone activity // inferred from electronic annotation 1368806_at AA799627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799627 /DB_XREF=gi:2862582 /DB_XREF=EST189124 /CLONE=RHEAD33 /FEA=FLmRNA /CNT=63 /TID=Rn.1451.1 /TIER=Stack /STK=19 /UG=Rn.1451 /LL=29360 /UG_GENE=Sepp1 /UG_TITLE=selenoprotein P, plasma, 1 /FL=gb:NM_019192.1 gb:M63574.1 gb:D25221.1 AA799627 selenoprotein P, plasma, 1 Sepp1 29360 NM_001083911 /// NM_019192 0001887 // selenium metabolic process // not recorded /// 0007420 // brain development // not recorded /// 0007626 // locomotory behavior // not recorded /// 0009791 // post-embryonic development // not recorded /// 0010269 // response to selenium ion // inferred from expression pattern /// 0019953 // sexual reproduction // not recorded /// 0040007 // growth // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0008430 // selenium binding // inferred from electronic annotation /// 0008430 // selenium binding // not recorded 1368807_at NM_080909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080909.1 /DB_XREF=gi:18266723 /GEN=Rtn3 /FEA=FLmRNA /CNT=55 /TID=Rn.3551.1 /TIER=FL /STK=2 /UG=Rn.3551 /DEF=Rattus norvegicus reticulon 3 (Rtn3), mRNA. /PROD=reticulon 3 /FL=gb:NM_080909.1 gb:AF442358.1 gb:AF442357.1 NM_080909 reticulon 3 Rtn3 140945 NM_001009953 /// NM_080909 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1368808_at NM_022383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022383.1 /DB_XREF=gi:11693145 /GEN=Cap1 /FEA=FLmRNA /CNT=44 /TID=Rn.922.1 /TIER=FL /STK=2 /UG=Rn.922 /LL=64185 /DEF=Rattus norvegicus cyclase-associated protein homologue (Cap1), mRNA. /PROD=cyclase-associated protein homologue /FL=gb:NM_022383.1 gb:L11930.1 NM_022383 CAP, adenylate cyclase-associated protein 1 (yeast) Cap1 64185 NM_022383 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0001667 // ameboidal cell migration // inferred from electronic annotation /// 0001667 // ameboidal cell migration // not recorded /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // not recorded /// 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded 0005576 // extracellular region // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1368809_at BG380723 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380723 /DB_XREF=gi:13305195 /DB_XREF=UI-R-CT0-bua-f-10-0-UI.s1 /CLONE=UI-R-CT0-bua-f-10-0-UI /FEA=FLmRNA /CNT=44 /TID=Rn.922.1 /TIER=Stack /STK=28 /UG=Rn.922 /LL=64185 /UG_GENE=Cap1 /UG_TITLE=cyclase-associated protein homologue /FL=gb:NM_022383.1 gb:L11930.1 BG380723 CAP, adenylate cyclase-associated protein 1 (yeast) Cap1 64185 NM_022383 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0001667 // ameboidal cell migration // inferred from electronic annotation /// 0001667 // ameboidal cell migration // not recorded /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // not recorded /// 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded 0005576 // extracellular region // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1368810_a_at BG666632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666632 /DB_XREF=gi:13888554 /DB_XREF=DRABQH01 /CLONE=DRABQH01 /FEA=FLmRNA /CNT=44 /TID=Rn.18.1 /TIER=Stack /STK=27 /UG=Rn.18 /LL=24547 /UG_GENE=Mbp /UG_TITLE=Myelin basic protein /FL=gb:NM_017026.1 gb:M25889.1 BG666632 myelin basic protein Mbp 24547 NM_001025289 /// NM_001025291 /// NM_001025292 /// NM_001025293 /// NM_001025294 /// NM_017026 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0042178 // xenobiotic catabolic process // inferred from direct assay /// 0042493 // response to drug // non-traceable author statement /// 0042552 // myelination // inferred from mutant phenotype /// 0042552 // myelination // not recorded /// 0042552 // myelination // inferred from electronic annotation /// 0050771 // negative regulation of axonogenesis // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005640 // nuclear outer membrane // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0033269 // internode region of axon // inferred from electronic annotation /// 0033269 // internode region of axon // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0042995 // cell projection // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043209 // myelin sheath // not recorded /// 0043209 // myelin sheath // traceable author statement /// 0043209 // myelin sheath // inferred from electronic annotation /// 0043218 // compact myelin // inferred from direct assay 0004364 // glutathione transferase activity // inferred from direct assay /// 0004364 // glutathione transferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008144 // drug binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0019911 // structural constituent of myelin sheath // inferred from mutant phenotype /// 0019911 // structural constituent of myelin sheath // traceable author statement /// 0019911 // structural constituent of myelin sheath // inferred from electronic annotation /// 0043295 // glutathione binding // inferred from direct assay 1368811_at NM_053905 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053905.1 /DB_XREF=gi:16758781 /GEN=Lmnb1 /FEA=FLmRNA /CNT=35 /TID=Rn.11362.1 /TIER=FL /STK=2 /UG=Rn.11362 /LL=116685 /DEF=Rattus norvegicus lamin B1 (Lmnb1), mRNA. /PROD=lamin B1 /FL=gb:NM_053905.1 gb:U72353.1 NM_053905 lamin B1 Lmnb1 116685 NM_053905 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005635 // nuclear envelope // not recorded /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005638 // lamin filament // inferred from electronic annotation /// 0005638 // lamin filament // not recorded /// 0005882 // intermediate filament // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from direct assay 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368812_at AI407364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407364 /DB_XREF=gi:4250868 /DB_XREF=EST235653 /CLONE=ROVED35 /FEA=FLmRNA /CNT=35 /TID=Rn.11362.1 /TIER=Stack /STK=25 /UG=Rn.11362 /LL=116685 /UG_GENE=Lmnb1 /UG_TITLE=lamin B1 /FL=gb:NM_053905.1 gb:U72353.1 AI407364 lamin B1 Lmnb1 116685 NM_053905 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005635 // nuclear envelope // not recorded /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005638 // lamin filament // inferred from electronic annotation /// 0005638 // lamin filament // not recorded /// 0005882 // intermediate filament // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from direct assay 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368813_at BF419200 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419200 /DB_XREF=gi:11407152 /DB_XREF=UI-R-BJ2-bqo-c-12-0-UI.s1 /CLONE=UI-R-BJ2-bqo-c-12-0-UI /FEA=FLmRNA /CNT=32 /TID=Rn.6975.1 /TIER=Stack /STK=24 /UG=Rn.6975 /LL=25695 /UG_GENE=Cebpd /UG_TITLE=CCAATenhancerbinding, protein (CEBP) delta /FL=gb:M65149.1 gb:NM_013154.1 BF419200 CCAAT/enhancer binding protein (C/EBP), delta Cebpd 25695 NM_013154 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003704 // specific RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0046983 // protein dimerization activity // inferred from electronic annotation 1368814_at NM_031057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031057.1 /DB_XREF=gi:13591996 /GEN=Mmsdh /FEA=FLmRNA /CNT=36 /TID=Rn.2098.1 /TIER=FL /STK=2 /UG=Rn.2098 /LL=81708 /DEF=Rattus norvegicus methylmalonate semialdehyde dehydrogenase gene (Mmsdh), mRNA. /PROD=methylmalonate semialdehyde dehydrogenase gene /FL=gb:M93401.1 gb:NM_031057.1 NM_031057 aldehyde dehydrogenase 6 family, member A1 Aldh6a1 81708 NM_031057 0006210 // thymine catabolic process // inferred from direct assay /// 0006573 // valine metabolic process // inferred from direct assay /// 0006573 // valine metabolic process // inferred from electronic annotation /// 0006574 // valine catabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0019484 // beta-alanine catabolic process // inferred from direct assay /// 0019859 // thymine metabolic process // inferred from direct assay /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000062 // acyl-CoA binding // inferred from sequence or structural similarity /// 0004491 // methylmalonate-semialdehyde dehydrogenase (acylating) activity // inferred from direct assay /// 0004491 // methylmalonate-semialdehyde dehydrogenase (acylating) activity // non-traceable author statement /// 0004491 // methylmalonate-semialdehyde dehydrogenase (acylating) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016790 // thiolester hydrolase activity // inferred from direct assay /// 0018478 // malonate-semialdehyde dehydrogenase (acetylating) activity // inferred from direct assay /// 0018478 // malonate-semialdehyde dehydrogenase (acetylating) activity // inferred from electronic annotation 1368815_at NM_017027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017027.1 /DB_XREF=gi:8393777 /GEN=Mpz /FEA=FLmRNA /CNT=36 /TID=Rn.8997.1 /TIER=FL /STK=2 /UG=Rn.8997 /LL=24564 /DEF=Rattus norvegicus Myelin protein zero (Charcot-Marie-Tooth neuropathy 1B) (Mpz), mRNA. /PROD=myelin protein zero (Charcot-Marie-Toothneuropathy 1B) /FL=gb:NM_017027.1 gb:K03242.1 NM_017027 myelin protein zero Mpz 24564 NM_017027 0045217 // cell-cell junction maintenance // inferred from electronic annotation /// 0045217 // cell-cell junction maintenance // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368816_at BG669096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669096 /DB_XREF=gi:13891018 /DB_XREF=DRN05E04 /CLONE=DRN05E04 /FEA=FLmRNA /CNT=36 /TID=Rn.8997.1 /TIER=Stack /STK=14 /UG=Rn.8997 /LL=24564 /UG_GENE=Mpz /UG_TITLE=Myelin protein zero (Charcot-Marie-Tooth neuropathy 1B) /FL=gb:NM_017027.1 gb:K03242.1 BG669096 myelin protein zero Mpz 24564 NM_017027 0045217 // cell-cell junction maintenance // inferred from electronic annotation /// 0045217 // cell-cell junction maintenance // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368817_at AI180458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180458 /DB_XREF=gi:3731096 /DB_XREF=EST224204 /CLONE=RSPCX94 /FEA=FLmRNA /CNT=41 /TID=Rn.16691.1 /TIER=Stack /STK=20 /UG=Rn.16691 /LL=78970 /UG_GENE=Temo /UG_TITLE=TEMO /FL=gb:NM_023986.1 gb:AF296169.1 AI180458 proteasome (prosome, macropain) activator subunit 4 Psme4 498433 NM_001025140 0005488 // binding // inferred from electronic annotation 1368818_at AW531920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531920 /DB_XREF=gi:7174334 /DB_XREF=UI-R-BS0-amj-h-09-0-UI.s1 /CLONE=UI-R-BS0-amj-h-09-0-UI /FEA=FLmRNA /CNT=41 /TID=Rn.16691.1 /TIER=Stack /STK=10 /UG=Rn.16691 /LL=78970 /UG_GENE=Temo /UG_TITLE=TEMO /FL=gb:NM_023986.1 gb:AF296169.1 AW531920 proteasome (prosome, macropain) activator subunit 4 Psme4 498433 NM_001025140 0005488 // binding // inferred from electronic annotation 1368819_at AI177366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177366 /DB_XREF=gi:3728004 /DB_XREF=EST220985 /CLONE=RPLBY20 /FEA=FLmRNA /CNT=33 /TID=Rn.25733.1 /TIER=Stack /STK=12 /UG=Rn.25733 /LL=24511 /UG_GENE=Itgb1 /UG_TITLE=Integrin, beta 1 /FL=gb:U12309.1 gb:NM_017022.1 AI177366 integrin, beta 1 Itgb1 24511 NM_017022 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001708 // cell fate specification // inferred from electronic annotation /// 0001708 // cell fate specification // not recorded /// 0001894 // tissue homeostasis // inferred from mutant phenotype /// 0006874 // cellular calcium ion homeostasis // inferred from direct assay /// 0007155 // cell adhesion // inferred from direct assay /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007159 // leukocyte cell-cell adhesion // not recorded /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0007229 // integrin-mediated signaling pathway // inferred from direct assay /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008354 // germ cell migration // inferred from electronic annotation /// 0008354 // germ cell migration // not recorded /// 0010811 // positive regulation of cell-substrate adhesion // inferred from mutant phenotype /// 0010976 // positive regulation of neuron projection development // inferred from mutant phenotype /// 0014823 // response to activity // inferred from expression pattern /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0031175 // neuron projection development // not recorded /// 0031175 // neuron projection development // inferred from electronic annotation /// 0031345 // negative regulation of cell projection organization // inferred from mutant phenotype /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032594 // protein transport within lipid bilayer // inferred from mutant phenotype /// 0033631 // cell-cell adhesion mediated by integrin // not recorded /// 0034698 // response to gonadotropin stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043410 // positive regulation of MAPKKK cascade // inferred from direct assay /// 0045214 // sarcomere organization // inferred from electronic annotation /// 0045214 // sarcomere organization // not recorded /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from mutant phenotype /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0045807 // positive regulation of endocytosis // inferred from mutant phenotype /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from mutant phenotype /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // not recorded /// 0060135 // maternal process involved in female pregnancy // inferred from expression pattern /// 0070830 // tight junction assembly // inferred from mutant phenotype /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern /// 0071305 // cellular response to vitamin D // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern /// 0071479 // cellular response to ionizing radiation // inferred from expression pattern /// 0071559 // response to transforming growth factor beta stimulus // inferred from expression pattern 0001669 // acrosomal vesicle // inferred from direct assay /// 0005604 // basement membrane // inferred from direct assay /// 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from direct assay /// 0005912 // adherens junction // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0005925 // focal adhesion // not recorded /// 0008305 // integrin complex // inferred by curator /// 0008305 // integrin complex // inferred from direct assay /// 0008305 // integrin complex // inferred from mutant phenotype /// 0008305 // integrin complex // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0030056 // hemidesmosome // inferred from direct assay /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0031594 // neuromuscular junction // not recorded /// 0032587 // ruffle membrane // not recorded /// 0034667 // alpha3-beta1 integrin complex // inferred from direct assay /// 0034679 // alpha9-beta1 integrin complex // inferred from direct assay /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042383 // sarcolemma // not recorded /// 0042470 // melanosome // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay 0001948 // glycoprotein binding // inferred from physical interaction /// 0001968 // fibronectin binding // inferred from direct assay /// 0002020 // protease binding // inferred from physical interaction /// 0003779 // actin binding // inferred from direct assay /// 0004872 // receptor activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005178 // integrin binding // inferred from mutant phenotype /// 0005178 // integrin binding // inferred from physical interaction /// 0005178 // integrin binding // not recorded /// 0005178 // integrin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005518 // collagen binding // inferred from direct assay /// 0019900 // kinase binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from physical interaction /// 0042277 // peptide binding // inferred from direct assay /// 0042802 // identical protein binding // not recorded /// 0043236 // laminin binding // inferred from direct assay /// 0043236 // laminin binding // inferred from mutant phenotype /// 0046982 // protein heterodimerization activity // inferred by curator /// 0046982 // protein heterodimerization activity // inferred from mutant phenotype /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0051393 // alpha-actinin binding // inferred from direct assay 1368820_at NM_012866 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012866.1 /DB_XREF=gi:6981269 /GEN=Nfyc /FEA=FLmRNA /CNT=23 /TID=Rn.1457.1 /TIER=FL /STK=2 /UG=Rn.1457 /LL=25337 /DEF=Rattus norvegicus CCAAT binding factor of CBF-CNFY-C (Nfyc), mRNA. /PROD=CCAAT binding factor of CBF-CNFY-C /FL=gb:U17607.1 gb:NM_012866.1 NM_012866 nuclear transcription factor-Y gamma Nfyc 25337 NM_012866 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016602 // CCAAT-binding factor complex // inferred from electronic annotation /// 0016602 // CCAAT-binding factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1368821_at NM_024369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024369.1 /DB_XREF=gi:13242264 /GEN=Frp /FEA=FLmRNA /CNT=43 /TID=Rn.2979.1 /TIER=FL /STK=2 /UG=Rn.2979 /LL=79210 /DEF=Rattus norvegicus follistatin-related protein precursor (Frp), mRNA. /PROD=follistatin-related protein precursor /FL=gb:U06864.1 gb:NM_024369.1 NM_024369 follistatin-like 1 Fstl1 79210 NM_024369 0030509 // BMP signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008201 // heparin binding // inferred from electronic annotation 1368822_at BI290885 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290885 /DB_XREF=gi:14949892 /DB_XREF=UI-R-DK0-cgi-f-09-0-UI.s1 /CLONE=UI-R-DK0-cgi-f-09-0-UI /FEA=FLmRNA /CNT=43 /TID=Rn.2979.1 /TIER=ConsEnd /STK=4 /UG=Rn.2979 /LL=79210 /UG_GENE=Frp /UG_TITLE=follistatin-related protein precursor /FL=gb:U06864.1 gb:NM_024369.1 BI290885 follistatin-like 1 Fstl1 79210 NM_024369 0030509 // BMP signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008201 // heparin binding // inferred from electronic annotation 1368823_at NM_013146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013146.1 /DB_XREF=gi:6978588 /GEN=Cald1 /FEA=FLmRNA /CNT=20 /TID=Rn.33965.1 /TIER=FL /STK=2 /UG=Rn.33965 /LL=25687 /DEF=Rattus norvegicus Caldesmon 1 (Cald1), mRNA. /PROD=caldesmon 1 /FL=gb:NM_013146.1 gb:U18419.1 NM_013146 0006936 // muscle contraction // inferred from electronic annotation /// 0007565 // female pregnancy // traceable author statement /// 0032092 // positive regulation of protein binding // inferred from direct assay /// 0051017 // actin filament bundle assembly // inferred from direct assay 0005624 // membrane fraction // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0030016 // myofibril // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0030478 // actin cap // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0003779 // actin binding // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // traceable author statement /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0017022 // myosin binding // inferred from electronic annotation 1368824_at BM392106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392106 /DB_XREF=gi:18192159 /DB_XREF=UI-R-DO1-ckp-m-11-0-UI.s1 /CLONE=UI-R-DO1-ckp-m-11-0-UI /FEA=FLmRNA /CNT=20 /TID=Rn.33965.1 /TIER=Stack /STK=8 /UG=Rn.33965 /LL=25687 /UG_GENE=Cald1 /UG_TITLE=Caldesmon 1 /FL=gb:NM_013146.1 gb:U18419.1 BM392106 caldesmon 1 Cald1 25687 NM_013146 0006936 // muscle contraction // inferred from electronic annotation /// 0006936 // muscle contraction // not recorded /// 0007565 // female pregnancy // traceable author statement /// 0032092 // positive regulation of protein binding // inferred from direct assay /// 0051017 // actin filament bundle assembly // inferred from direct assay 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0015629 // actin cytoskeleton // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0030016 // myofibril // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0030478 // actin cap // inferred from electronic annotation /// 0030478 // actin cap // not recorded /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0003779 // actin binding // inferred from direct assay /// 0003779 // actin binding // traceable author statement /// 0003779 // actin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0017022 // myosin binding // inferred from electronic annotation 1368825_at AW142030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142030 /DB_XREF=gi:6161889 /DB_XREF=EST292236 /CLONE=RGIAF12 /FEA=FLmRNA /CNT=21 /TID=Rn.11258.1 /TIER=Stack /STK=9 /UG=Rn.11258 /LL=25546 /UG_GENE=Shox2 /UG_TITLE=Short stature homeobox 2 /FL=gb:NM_013028.1 AW142030 short stature homeobox 2 Shox2 25546 NM_013028 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0002063 // chondrocyte development // inferred from electronic annotation /// 0002063 // chondrocyte development // not recorded /// 0003170 // heart valve development // inferred from electronic annotation /// 0003170 // heart valve development // not recorded /// 0003209 // cardiac atrium morphogenesis // inferred from electronic annotation /// 0003209 // cardiac atrium morphogenesis // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0032330 // regulation of chondrocyte differentiation // inferred from electronic annotation /// 0032330 // regulation of chondrocyte differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045880 // positive regulation of smoothened signaling pathway // inferred from electronic annotation /// 0045880 // positive regulation of smoothened signaling pathway // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048557 // embryonic digestive tract morphogenesis // inferred from electronic annotation /// 0048557 // embryonic digestive tract morphogenesis // not recorded /// 0048598 // embryonic morphogenesis // inferred from electronic annotation /// 0048598 // embryonic morphogenesis // not recorded /// 0060272 // embryonic skeletal joint morphogenesis // inferred from electronic annotation /// 0060272 // embryonic skeletal joint morphogenesis // not recorded /// 0060351 // cartilage development involved in endochondral bone morphogenesis // inferred from electronic annotation /// 0060351 // cartilage development involved in endochondral bone morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1368826_at NM_012531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012531.1 /DB_XREF=gi:6978680 /GEN=Comt /FEA=FLmRNA /CNT=21 /TID=Rn.220.1 /TIER=FL /STK=2 /UG=Rn.220 /LL=24267 /DEF=Rattus norvegicus Catecholamine-O-methyltransferase (Comt), mRNA. /PROD=catecholamine-O-methyltransferase /FL=gb:M60753.1 gb:NM_012531.1 NM_012531 catechol-O-methyltransferase Comt 24267 NM_012531 0006584 // catecholamine metabolic process // traceable author statement /// 0006584 // catecholamine metabolic process // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from mutant phenotype /// 0007612 // learning // inferred from mutant phenotype /// 0008210 // estrogen metabolic process // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0042135 // neurotransmitter catabolic process // inferred from electronic annotation /// 0042417 // dopamine metabolic process // traceable author statement /// 0042420 // dopamine catabolic process // inferred from electronic annotation /// 0042420 // dopamine catabolic process // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045963 // negative regulation of dopamine metabolic process // inferred from mutant phenotype /// 0046498 // S-adenosylhomocysteine metabolic process // traceable author statement /// 0046500 // S-adenosylmethionine metabolic process // traceable author statement /// 0048265 // response to pain // inferred from mutant phenotype /// 0048609 // multicellular organismal reproductive process // inferred from mutant phenotype /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0050668 // positive regulation of homocysteine metabolic process // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000287 // magnesium ion binding // traceable author statement /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008171 // O-methyltransferase activity // inferred from electronic annotation /// 0016206 // catechol O-methyltransferase activity // inferred from direct assay /// 0016206 // catechol O-methyltransferase activity // not recorded /// 0016206 // catechol O-methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368827_at NM_019185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019185.1 /DB_XREF=gi:11875204 /GEN=Gata6 /FEA=FLmRNA /CNT=16 /TID=Rn.8701.1 /TIER=FL /STK=2 /UG=Rn.8701 /LL=29300 /DEF=Rattus norvegicus GATA-binding protein 6 (Gata6), mRNA. /PROD=GATA-binding protein 6 /FL=gb:NM_019185.1 gb:L22760.1 NM_019185 GATA binding protein 6 Gata6 29300 NM_019185 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0003148 // outflow tract septum morphogenesis // inferred from electronic annotation /// 0003148 // outflow tract septum morphogenesis // not recorded /// 0003309 // pancreatic B cell differentiation // inferred from electronic annotation /// 0003309 // pancreatic B cell differentiation // not recorded /// 0003310 // pancreatic A cell differentiation // inferred from electronic annotation /// 0003310 // pancreatic A cell differentiation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from expression pattern /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007492 // endoderm development // inferred from electronic annotation /// 0007492 // endoderm development // not recorded /// 0008584 // male gonad development // not recorded /// 0009636 // response to toxin // inferred from expression pattern /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0030513 // positive regulation of BMP signaling pathway // inferred from direct assay /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0031016 // pancreas development // inferred from electronic annotation /// 0031016 // pancreas development // not recorded /// 0032569 // gene-specific transcription from RNA polymerase II promoter // not recorded /// 0032569 // gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043627 // response to estrogen stimulus // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048645 // organ formation // inferred from electronic annotation /// 0048645 // organ formation // not recorded /// 0051145 // smooth muscle cell differentiation // not recorded /// 0051591 // response to cAMP // inferred from expression pattern /// 0051891 // positive regulation of cardioblast differentiation // inferred from electronic annotation /// 0051891 // positive regulation of cardioblast differentiation // not recorded /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // not recorded /// 0060430 // lung saccule development // inferred from electronic annotation /// 0060430 // lung saccule development // not recorded /// 0060486 // Clara cell differentiation // inferred from electronic annotation /// 0060486 // Clara cell differentiation // not recorded /// 0060510 // Type II pneumocyte differentiation // inferred from electronic annotation /// 0060510 // Type II pneumocyte differentiation // not recorded /// 0060575 // intestinal epithelial cell differentiation // inferred from electronic annotation /// 0060575 // intestinal epithelial cell differentiation // not recorded /// 0071371 // cellular response to gonadotropin stimulus // inferred from electronic annotation /// 0071371 // cellular response to gonadotropin stimulus // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from direct assay /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368828_at AA955182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955182 /DB_XREF=gi:4234265 /DB_XREF=UI-R-A1-du-b-11-0-UI.s1 /CLONE=UI-R-A1-du-b-11-0-UI /FEA=FLmRNA /CNT=16 /TID=Rn.8701.1 /TIER=Stack /STK=13 /UG=Rn.8701 /LL=29300 /UG_GENE=Gata6 /UG_TITLE=GATA-binding protein 6 /FL=gb:NM_019185.1 gb:L22760.1 AA955182 GATA binding protein 6 Gata6 29300 NM_019185 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0003148 // outflow tract septum morphogenesis // inferred from electronic annotation /// 0003148 // outflow tract septum morphogenesis // not recorded /// 0003309 // pancreatic B cell differentiation // inferred from electronic annotation /// 0003309 // pancreatic B cell differentiation // not recorded /// 0003310 // pancreatic A cell differentiation // inferred from electronic annotation /// 0003310 // pancreatic A cell differentiation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from expression pattern /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007492 // endoderm development // inferred from electronic annotation /// 0007492 // endoderm development // not recorded /// 0008584 // male gonad development // not recorded /// 0009636 // response to toxin // inferred from expression pattern /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0030513 // positive regulation of BMP signaling pathway // inferred from direct assay /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0031016 // pancreas development // inferred from electronic annotation /// 0031016 // pancreas development // not recorded /// 0032569 // gene-specific transcription from RNA polymerase II promoter // not recorded /// 0032569 // gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043627 // response to estrogen stimulus // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048645 // organ formation // inferred from electronic annotation /// 0048645 // organ formation // not recorded /// 0051145 // smooth muscle cell differentiation // not recorded /// 0051591 // response to cAMP // inferred from expression pattern /// 0051891 // positive regulation of cardioblast differentiation // inferred from electronic annotation /// 0051891 // positive regulation of cardioblast differentiation // not recorded /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // not recorded /// 0060430 // lung saccule development // inferred from electronic annotation /// 0060430 // lung saccule development // not recorded /// 0060486 // Clara cell differentiation // inferred from electronic annotation /// 0060486 // Clara cell differentiation // not recorded /// 0060510 // Type II pneumocyte differentiation // inferred from electronic annotation /// 0060510 // Type II pneumocyte differentiation // not recorded /// 0060575 // intestinal epithelial cell differentiation // inferred from electronic annotation /// 0060575 // intestinal epithelial cell differentiation // not recorded /// 0071371 // cellular response to gonadotropin stimulus // inferred from electronic annotation /// 0071371 // cellular response to gonadotropin stimulus // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from direct assay /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368829_at BM389019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389019 /DB_XREF=gi:18189072 /DB_XREF=UI-R-DZ0-ckn-p-18-0-UI.s1 /CLONE=UI-R-DZ0-ckn-p-18-0-UI /FEA=FLmRNA /CNT=36 /TID=Rn.12759.1 /TIER=Stack /STK=13 /UG=Rn.12759 /LL=83727 /UG_GENE=Fbn1 /UG_TITLE=fibrillin-1 /FL=gb:AF135059.1 gb:NM_031825.1 BM389019 fibrillin 1 Fbn1 83727 NM_031825 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001822 // kidney development // inferred from mutant phenotype /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded 0001527 // microfibril // inferred from electronic annotation /// 0001527 // microfibril // not recorded /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // not recorded 0005201 // extracellular matrix structural constituent // inferred from mutant phenotype /// 0005201 // extracellular matrix structural constituent // not recorded /// 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368830_at NM_031977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031977.1 /DB_XREF=gi:14010834 /GEN=Src /FEA=FLmRNA /CNT=18 /TID=Rn.2801.1 /TIER=FL /STK=2 /UG=Rn.2801 /LL=83805 /DEF=Rattus norvegicus tyrosine protein kinase pp60-c-src (Src), mRNA. /PROD=tyrosine protein kinase pp60-c-src /FL=gb:AF157016.1 gb:NM_031977.1 gb:AF130457.1 NM_031977 v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) Src 83805 NM_031977 0001101 // response to acid // inferred from expression pattern /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006950 // response to stress // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from expression pattern /// 0007243 // intracellular protein kinase cascade // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0008283 // cell proliferation // inferred from direct assay /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009615 // response to virus // inferred from expression pattern /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0010740 // positive regulation of intracellular protein kinase cascade // inferred from mutant phenotype /// 0010907 // positive regulation of glucose metabolic process // inferred from mutant phenotype /// 0014911 // positive regulation of smooth muscle cell migration // inferred from mutant phenotype /// 0016310 // phosphorylation // not recorded /// 0016337 // cell-cell adhesion // inferred from expression pattern /// 0016477 // cell migration // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0033146 // regulation of estrogen receptor signaling pathway // not recorded /// 0033146 // regulation of estrogen receptor signaling pathway // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from direct assay /// 0045056 // transcytosis // inferred from direct assay /// 0045785 // positive regulation of cell adhesion // inferred from direct assay /// 0046628 // positive regulation of insulin receptor signaling pathway // inferred from direct assay /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from expression pattern /// 0048011 // nerve growth factor receptor signaling pathway // inferred from direct assay /// 0048477 // oogenesis // not recorded /// 0048477 // oogenesis // inferred from electronic annotation /// 0050715 // positive regulation of cytokine secretion // inferred from mutant phenotype /// 0051222 // positive regulation of protein transport // inferred from mutant phenotype /// 0051385 // response to mineralocorticoid stimulus // inferred from expression pattern /// 0051602 // response to electrical stimulus // inferred from expression pattern /// 0060065 // uterus development // not recorded /// 0060065 // uterus development // inferred from electronic annotation /// 0060444 // branching involved in mammary gland duct morphogenesis // not recorded /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070542 // response to fatty acid // inferred from expression pattern /// 0070555 // response to interleukin-1 // not recorded /// 0071222 // cellular response to lipopolysaccharide // inferred from expression pattern /// 0071398 // cellular response to fatty acid // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from expression pattern 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005901 // caveola // inferred from direct assay /// 0005901 // caveola // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0019717 // synaptosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005080 // protein kinase C binding // inferred from physical interaction /// 0005102 // receptor binding // inferred from physical interaction /// 0005158 // insulin receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019904 // protein domain specific binding // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0042169 // SH2 domain binding // not recorded /// 0050839 // cell adhesion molecule binding // inferred from physical interaction 1368831_at NM_130749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130749.1 /DB_XREF=gi:18543358 /GEN=Mark3 /FEA=FLmRNA /CNT=24 /TID=Rn.23232.1 /TIER=FL /STK=2 /UG=Rn.23232 /DEF=Rattus norvegicus MAPmicrotubule affinity-regulating kinase 3 (Mark3), mRNA. /PROD=MAPmicrotubule affinity-regulating kinase 3 /FL=gb:AF465412.1 gb:NM_130749.1 NM_130749 MAP/microtubule affinity-regulating kinase 3 Mark3 170577 NM_130749 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368832_at NM_017093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017093.1 /DB_XREF=gi:8392887 /GEN=Akt2 /FEA=FLmRNA /CNT=24 /TID=Rn.4293.1 /TIER=FL /STK=2 /UG=Rn.4293 /LL=25233 /DEF=Rattus norvegicus Murine thymoma viral (v-akt) oncogene homolog 2 (Akt2), mRNA. /PROD=murine thymoma viral (v-akt) oncogene homolog 2 /FL=gb:NM_017093.1 gb:D30041.1 NM_017093 v-akt murine thymoma viral oncogene homolog 2 Akt2 25233 NM_017093 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006970 // response to osmotic stress // inferred from expression pattern /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // not recorded /// 0009967 // positive regulation of signal transduction // inferred from mutant phenotype /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0010748 // negative regulation of plasma membrane long-chain fatty acid transport // inferred from electronic annotation /// 0010748 // negative regulation of plasma membrane long-chain fatty acid transport // not recorded /// 0010765 // positive regulation of sodium ion transport // inferred from mutant phenotype /// 0010907 // positive regulation of glucose metabolic process // inferred from electronic annotation /// 0010907 // positive regulation of glucose metabolic process // not recorded /// 0014850 // response to muscle activity // inferred from expression pattern /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032000 // positive regulation of fatty acid beta-oxidation // inferred from electronic annotation /// 0032000 // positive regulation of fatty acid beta-oxidation // not recorded /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from mutant phenotype /// 0032869 // cellular response to insulin stimulus // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0033119 // negative regulation of RNA splicing // inferred from mutant phenotype /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0043154 // negative regulation of caspase activity // inferred from mutant phenotype /// 0043491 // protein kinase B signaling cascade // inferred from mutant phenotype /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from mutant phenotype /// 0045725 // positive regulation of glycogen biosynthetic process // inferred from electronic annotation /// 0045725 // positive regulation of glycogen biosynthetic process // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046326 // positive regulation of glucose import // inferred from mutant phenotype /// 0046326 // positive regulation of glucose import // not recorded /// 0046326 // positive regulation of glucose import // inferred from electronic annotation /// 0046328 // regulation of JNK cascade // inferred from electronic annotation /// 0046328 // regulation of JNK cascade // not recorded /// 0050927 // positive regulation of positive chemotaxis // inferred from direct assay /// 0070887 // cellular response to chemical stimulus // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0031982 // vesicle // inferred from direct assay /// 0032593 // insulin-responsive compartment // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368833_at NM_012519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012519.1 /DB_XREF=gi:6978594 /GEN=Camk2d /FEA=FLmRNA /CNT=21 /TID=Rn.122.1 /TIER=FL /STK=2 /UG=Rn.122 /LL=24246 /DEF=Rattus norvegicus Ca++calmodulin-dependent protein kinase II, delta subunit (Camk2d), mRNA. /PROD=Ca++calmodulin-dependent protein kinase II,delta subunit /FL=gb:J05072.1 gb:NM_012519.1 NM_012519 calcium/calmodulin-dependent protein kinase II delta Camk2d 24246 NM_012519 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0010389 // regulation of G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 0030007 // cellular potassium ion homeostasis // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0060048 // cardiac muscle contraction // not recorded /// 0060048 // cardiac muscle contraction // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005954 // calcium- and calmodulin-dependent protein kinase complex // traceable author statement /// 0030315 // T-tubule // not recorded /// 0030315 // T-tubule // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // not recorded /// 0031594 // neuromuscular junction // not recorded /// 0031594 // neuromuscular junction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from direct assay /// 0004683 // calmodulin-dependent protein kinase activity // inferred from mutant phenotype /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368834_at AA894330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894330 /DB_XREF=gi:3021209 /DB_XREF=EST198133 /CLONE=RSPAW76 /FEA=FLmRNA /CNT=21 /TID=Rn.122.1 /TIER=Stack /STK=11 /UG=Rn.122 /LL=24246 /UG_GENE=Camk2d /UG_TITLE=Ca++calmodulin-dependent protein kinase II, delta subunit /FL=gb:J05072.1 gb:NM_012519.1 AA894330 calcium/calmodulin-dependent protein kinase II delta Camk2d 24246 NM_012519 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0010389 // regulation of G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 0030007 // cellular potassium ion homeostasis // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0060048 // cardiac muscle contraction // not recorded /// 0060048 // cardiac muscle contraction // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005954 // calcium- and calmodulin-dependent protein kinase complex // traceable author statement /// 0030315 // T-tubule // not recorded /// 0030315 // T-tubule // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // not recorded /// 0031594 // neuromuscular junction // not recorded /// 0031594 // neuromuscular junction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from direct assay /// 0004683 // calmodulin-dependent protein kinase activity // inferred from mutant phenotype /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368835_at AW434718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434718 /DB_XREF=gi:6966025 /DB_XREF=UI-R-BJ0p-afz-d-04-0-UI.s1 /CLONE=UI-R-BJ0p-afz-d-04-0-UI /FEA=FLmRNA /CNT=16 /TID=Rn.12592.1 /TIER=Stack /STK=7 /UG=Rn.12592 /LL=25124 /UG_GENE=Stat1 /UG_TITLE=Signal transducer and activator of transcription 1 /FL=gb:AF205604.1 gb:NM_032612.1 AW434718 signal transducer and activator of transcription 1 /// signal transducer and activator of transcription 4 Stat1 /// Stat4 25124 /// 367264 NM_001012226 /// NM_001034164 /// NM_032612 0006350 // transcription // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006917 // induction of apoptosis // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007259 // JAK-STAT cascade // inferred from mutant phenotype /// 0007259 // JAK-STAT cascade // traceable author statement /// 0007584 // response to nutrient // inferred from direct assay /// 0008015 // blood circulation // inferred from mutant phenotype /// 0008283 // cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0009612 // response to mechanical stimulus // inferred from direct assay /// 0009617 // response to bacterium // not recorded /// 0009617 // response to bacterium // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0031663 // lipopolysaccharide-mediated signaling pathway // not recorded /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from direct assay /// 0034097 // response to cytokine stimulus // inferred from direct assay /// 0042493 // response to drug // inferred from direct assay /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043330 // response to exogenous dsRNA // not recorded /// 0043330 // response to exogenous dsRNA // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0051591 // response to cAMP // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded 1368836_a_at NM_022190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022190.1 /DB_XREF=gi:11990615 /GEN=Agc1 /FEA=FLmRNA /CNT=22 /TID=Rn.54503.1 /TIER=FL /STK=2 /UG=Rn.54503 /LL=58968 /DEF=Rattus norvegicus aggrecan 1 (Agc1), mRNA. /PROD=aggrecan 1 /FL=gb:J03485.1 gb:NM_022190.1 NM_022190 aggrecan Acan 58968 NM_022190 0001502 // cartilage condensation // not recorded /// 0001503 // ossification // inferred from expression pattern /// 0002063 // chondrocyte development // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from expression pattern /// 0009314 // response to radiation // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009629 // response to gravity // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010259 // multicellular organismal aging // inferred from expression pattern /// 0010447 // response to acidity // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0021510 // spinal cord development // inferred from expression pattern /// 0030166 // proteoglycan biosynthetic process // not recorded /// 0030199 // collagen fibril organization // not recorded /// 0030336 // negative regulation of cell migration // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0060591 // chondroblast differentiation // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from direct assay /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005578 // proteinaceous extracellular matrix // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0031012 // extracellular matrix // not recorded /// 0048222 // glycoprotein network // inferred from direct assay 0005201 // extracellular matrix structural constituent // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // inferred from electronic annotation 1368837_at NM_053421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053421.1 /DB_XREF=gi:16758161 /GEN=Bcaa /FEA=FLmRNA /CNT=22 /TID=Rn.17210.1 /TIER=FL /STK=2 /UG=Rn.17210 /LL=84481 /DEF=Rattus norvegicus retinoblastoma-binding protein 1-related protein (Bcaa), mRNA. /PROD=retinoblastoma-binding protein 1-relatedprotein /FL=gb:NM_053421.1 gb:AF245512.1 NM_053421 AT rich interactive domain 4B (Rbp1 like) Arid4b 84481 NM_053421 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368838_at NM_012678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012678.1 /DB_XREF=gi:6981671 /GEN=Tpm4 /FEA=FLmRNA /CNT=17 /TID=Rn.11115.1 /TIER=FL /STK=2 /UG=Rn.11115 /LL=24852 /DEF=Rattus norvegicus Tropomyosin 4 (Tpm4), mRNA. /PROD=Tropomyosin 4 /FL=gb:J02780.1 gb:NM_012678.1 NM_012678 tropomyosin 4 Tpm4 24852 NM_012678 0006936 // muscle contraction // not recorded /// 0006936 // muscle contraction // traceable author statement /// 0006979 // response to oxidative stress // not recorded 0001725 // stress fiber // not recorded /// 0002102 // podosome // inferred from electronic annotation /// 0002102 // podosome // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // not recorded /// 0031941 // filamentous actin // inferred from electronic annotation /// 0031941 // filamentous actin // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368839_at AI407433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407433 /DB_XREF=gi:4250937 /DB_XREF=EST235722 /CLONE=ROVDQ17 /FEA=FLmRNA /CNT=16 /TID=Rn.16015.1 /TIER=Stack /STK=8 /UG=Rn.16015 /LL=83725 /UG_GENE=Wfs1 /UG_TITLE=Wolfram syndrome 1 (wolframin) /FL=gb:NM_031823.1 gb:AF136378.1 AI407433 Wolfram syndrome 1 homolog (human) Wfs1 83725 NM_031823 0001822 // kidney development // not recorded /// 0003091 // renal water homeostasis // not recorded /// 0007601 // visual perception // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0032469 // endoplasmic reticulum calcium ion homeostasis // not recorded /// 0042048 // olfactory behavior // inferred from expression pattern /// 0042593 // glucose homeostasis // not recorded /// 0043069 // negative regulation of programmed cell death // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0050877 // neurological system process // not recorded /// 0051247 // positive regulation of protein metabolic process // not recorded /// 0051928 // positive regulation of calcium ion transport // not recorded /// 0055074 // calcium ion homeostasis // not recorded 0030176 // integral to endoplasmic reticulum membrane // not recorded /// 0030425 // dendrite // inferred from direct assay 0051117 // ATPase binding // inferred from electronic annotation /// 0051117 // ATPase binding // not recorded 1368840_at NM_134390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134390.1 /DB_XREF=gi:19705504 /GEN=TORID /FEA=FLmRNA /CNT=15 /TID=Rn.26876.1 /TIER=FL /STK=2 /UG=Rn.26876 /LL=171411 /DEF=Rattus norvegicus TORID (TORID), mRNA. /PROD=TORID /FL=gb:AF370882.1 gb:NM_134390.1 NM_134390 transmembrane protein 176B Tmem176b 171411 NM_134390 0030154 // cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 1368841_at NM_053369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053369.1 /DB_XREF=gi:16758095 /GEN=Tcf4 /FEA=FLmRNA /CNT=35 /TID=Rn.23354.1 /TIER=FL /STK=2 /UG=Rn.23354 /LL=84382 /DEF=Rattus norvegicus transcription factor 4 (Tcf4), mRNA. /PROD=R8f DNA-binding protein /FL=gb:NM_053369.1 gb:AF149284.1 NM_053369 transcription factor 4 Tcf4 84382 NM_053369 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0021769 // orbitofrontal cortex development // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0030282 // bone mineralization // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048625 // myoblast cell fate commitment // not recorded /// 0048660 // regulation of smooth muscle cell proliferation // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008013 // beta-catenin binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0070016 // armadillo repeat domain binding // not recorded 1368842_at BG377130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377130 /DB_XREF=gi:13301642 /DB_XREF=UI-R-CU0-bvb-c-10-0-UI.s1 /CLONE=UI-R-CU0-bvb-c-10-0-UI /FEA=FLmRNA /CNT=35 /TID=Rn.23354.1 /TIER=ConsEnd /STK=5 /UG=Rn.23354 /LL=84382 /UG_GENE=Tcf4 /UG_TITLE=transcription factor 4 /FL=gb:NM_053369.1 gb:AF149284.1 BG377130 1368843_at NM_053682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053682.1 /DB_XREF=gi:16758497 /GEN=Yme1l1 /FEA=FLmRNA /CNT=17 /TID=Rn.1148.1 /TIER=FL /STK=2 /UG=Rn.1148 /LL=114217 /DEF=Rattus norvegicus YME1 (S.cerevisiae)-like 1 (Yme1l1), mRNA. /PROD=YME1 (S.cerevisiae)-like 1 /FL=gb:NM_053682.1 gb:AF151784.1 NM_053682 YME1-like 1 (S. cerevisiae) Yme1l1 114217 NM_053682 0006508 // proteolysis // inferred from electronic annotation /// 0030163 // protein catabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368844_at NM_019271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019271.1 /DB_XREF=gi:9507148 /GEN=Stch /FEA=FLmRNA /CNT=15 /TID=Rn.11050.1 /TIER=FL /STK=2 /UG=Rn.11050 /LL=29734 /DEF=Rattus norvegicus stress 70 protein chaperone, microsome-associated, 60kD human homolog (Stch), mRNA. /PROD=stress 70 protein chaperone,microsome-associated, 60kD human homolog /FL=gb:AF006617.1 gb:NM_019271.1 NM_019271 heat shock protein 70kDa family, member 13 Hspa13 29734 NM_019271 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1368845_at NM_024000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024000.1 /DB_XREF=gi:13027457 /GEN=1G5 /FEA=FLmRNA /CNT=14 /TID=Rn.9958.1 /TIER=FL /STK=2 /UG=Rn.9958 /LL=79011 /DEF=Rattus norvegicus vesicle-associated calmodulin-binding protein (1G5), mRNA. /PROD=vesicle-associated calmodulin-binding protein /FL=gb:L22557.1 gb:NM_024000.1 NM_024000 CaM kinase-like vesicle-associated Camkv 79011 NM_024000 0006468 // protein phosphorylation // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation 1368846_at AI412410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412410 /DB_XREF=gi:4255914 /DB_XREF=EST240709 /CLONE=RBRDU42 /FEA=FLmRNA /CNT=14 /TID=Rn.9958.1 /TIER=Stack /STK=6 /UG=Rn.9958 /LL=79011 /UG_GENE=1G5 /UG_TITLE=vesicle-associated calmodulin-binding protein /FL=gb:L22557.1 gb:NM_024000.1 AI412410 CaM kinase-like vesicle-associated Camkv 79011 NM_024000 0006468 // protein phosphorylation // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation 1368847_at NM_017359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017359.1 /DB_XREF=gi:8394123 /GEN=Rab10 /FEA=FLmRNA /CNT=14 /TID=Rn.4579.1 /TIER=FL /STK=2 /UG=Rn.4579 /LL=50993 /DEF=Rattus norvegicus ras-related protein rab10 (Rab10), mRNA. /PROD=ras-related protein rab10 /FL=gb:M83677.1 gb:NM_017359.1 NM_017359 RAB10, member RAS oncogene family Rab10 50993 NM_017359 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0071236 // cellular response to antibiotic // inferred from expression pattern 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1368848_at NM_053886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053886.1 /DB_XREF=gi:16758757 /GEN=Lman1 /FEA=FLmRNA /CNT=13 /TID=Rn.25734.1 /TIER=FL /STK=2 /UG=Rn.25734 /LL=116666 /DEF=Rattus norvegicus lectin, mannose-binding, 1 (Lman1), mRNA. /PROD=lectin, mannose-binding, 1 /FL=gb:U44129.1 gb:NM_053886.1 NM_053886 lectin, mannose-binding, 1 Lman1 116666 NM_053886 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005793 // ER-Golgi intermediate compartment // inferred from direct assay /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0005793 // ER-Golgi intermediate compartment // traceable author statement /// 0005793 // ER-Golgi intermediate compartment // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030017 // sarcomere // inferred from electronic annotation /// 0030017 // sarcomere // not recorded /// 0033116 // ER-Golgi intermediate compartment membrane // inferred from electronic annotation 0005509 // calcium ion binding // traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0005537 // mannose binding // traceable author statement /// 0042802 // identical protein binding // inferred from direct assay 1368849_at NM_022855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022855.1 /DB_XREF=gi:12408305 /GEN=Csnk1g3 /FEA=FLmRNA /CNT=11 /TID=Rn.10084.1 /TIER=FL /STK=2 /UG=Rn.10084 /LL=64823 /DEF=Rattus norvegicus casein kinase 1 gamma 3 isoform (Csnk1g3), mRNA. /PROD=casein kinase 1 gamma 3 isoform /FL=gb:U22321.1 gb:NM_022855.1 NM_022855 casein kinase 1, gamma 3 Csnk1g3 64823 NM_022855 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0001948 // glycoprotein binding // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0051219 // phosphoprotein binding // inferred from direct assay 1368850_at BE111111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111111 /DB_XREF=gi:8503216 /DB_XREF=UI-R-BJ1-auz-g-05-0-UI.s1 /CLONE=UI-R-BJ1-auz-g-05-0-UI /FEA=FLmRNA /CNT=11 /TID=Rn.10084.1 /TIER=Stack /STK=7 /UG=Rn.10084 /LL=64823 /UG_GENE=Csnk1g3 /UG_TITLE=casein kinase 1 gamma 3 isoform /FL=gb:U22321.1 gb:NM_022855.1 BE111111 casein kinase 1, gamma 3 Csnk1g3 64823 NM_022855 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0001948 // glycoprotein binding // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0051219 // phosphoprotein binding // inferred from direct assay 1368851_at NM_012555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012555.1 /DB_XREF=gi:6978818 /GEN=Ets1 /FEA=FLmRNA /CNT=20 /TID=Rn.7142.1 /TIER=FL /STK=2 /UG=Rn.7142 /LL=24356 /DEF=Rattus norvegicus Ets avian erythroblastosis virus E2 oncogene homolog 1 (tumor progression locus 1) (Ets1), mRNA. /PROD=ets avian erythroblastosis virus E2 oncogenehomolog 1 (tumor progression locus 1) /FL=gb:L20681.1 gb:NM_012555.1 NM_012555 v-ets erythroblastosis virus E26 oncogene homolog 1 (avian) Ets1 24356 NM_012555 0001666 // response to hypoxia // inferred from expression pattern /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0006917 // induction of apoptosis // not recorded /// 0007565 // female pregnancy // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0009611 // response to wounding // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010715 // regulation of extracellular matrix disassembly // inferred from mutant phenotype /// 0021854 // hypothalamus development // inferred from expression pattern /// 0021983 // pituitary gland development // inferred from expression pattern /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030578 // PML body organization // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0034616 // response to laminar fluid shear stress // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045648 // positive regulation of erythrocyte differentiation // not recorded /// 0045648 // positive regulation of erythrocyte differentiation // inferred from sequence or structural similarity /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0045786 // negative regulation of cell cycle // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046677 // response to antibiotic // not recorded /// 0048870 // cell motility // not recorded /// 0051272 // positive regulation of cellular component movement // not recorded /// 0060055 // angiogenesis involved in wound healing // inferred from expression pattern /// 0060206 // estrous cycle phase // inferred from expression pattern /// 0070301 // cellular response to hydrogen peroxide // inferred from expression pattern /// 0070555 // response to interleukin-1 // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1368852_at BG668811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668811 /DB_XREF=gi:13890733 /DB_XREF=DRNBOG12 /CLONE=DRNBOG12 /FEA=FLmRNA /CNT=20 /TID=Rn.64562.1 /TIER=Stack /STK=7 /UG=Rn.64562 /LL=65028 /UG_GENE=Hsj2 /UG_TITLE=DnaJ-like protein /FL=gb:U53922.1 gb:NM_022934.1 BG668811 DnaJ (Hsp40) homolog, subfamily A, member 1 Dnaja1 65028 NM_022934 0006457 // protein folding // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0009408 // response to heat // inferred from electronic annotation /// 0030317 // sperm motility // not recorded /// 0030521 // androgen receptor signaling pathway // not recorded /// 0042769 // DNA damage response, detection of DNA damage // inferred from direct assay 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050750 // low-density lipoprotein receptor binding // not recorded /// 0051082 // unfolded protein binding // inferred from electronic annotation 1368853_at NM_012686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012686.1 /DB_XREF=gi:6981707 /GEN=Vsnl1 /FEA=FLmRNA /CNT=19 /TID=Rn.24821.1 /TIER=FL /STK=2 /UG=Rn.24821 /LL=24877 /DEF=Rattus norvegicus Neural visinin-like protein 1 (Vsnl1), mRNA. /PROD=neural visinin-like protein 1 /FL=gb:D10666.1 gb:NM_012686.1 NM_012686 visinin-like 1 Vsnl1 24877 NM_012686 0007417 // central nervous system development // traceable author statement /// 0019722 // calcium-mediated signaling // traceable author statement 0005509 // calcium ion binding // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation 1368854_at AI227991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227991 /DB_XREF=gi:3811878 /DB_XREF=EST224686 /CLONE=RBRCO48 /FEA=FLmRNA /CNT=19 /TID=Rn.24821.1 /TIER=Stack /STK=7 /UG=Rn.24821 /LL=24877 /UG_GENE=Vsnl1 /UG_TITLE=Neural visinin-like protein 1 /FL=gb:D10666.1 gb:NM_012686.1 AI227991 visinin-like 1 Vsnl1 24877 NM_012686 0007417 // central nervous system development // traceable author statement /// 0019722 // calcium-mediated signaling // traceable author statement 0005509 // calcium ion binding // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation 1368855_at NM_031586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031586.1 /DB_XREF=gi:13928793 /GEN=Ighmbp2 /FEA=FLmRNA /CNT=18 /TID=Rn.23984.1 /TIER=FL /STK=2 /UG=Rn.23984 /LL=29532 /DEF=Rattus norvegicus immunoglobulin S mu binding protein 2 (Ighmbp2), mRNA. /PROD=immunoglobulin S mu binding protein 2 /FL=gb:NM_031586.1 gb:AF199411.1 NM_031586 immunoglobulin mu binding protein 2 Ighmbp2 29532 NM_031586 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006350 // transcription // inferred from electronic annotation /// 0021522 // spinal cord motor neuron differentiation // inferred from electronic annotation /// 0021522 // spinal cord motor neuron differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0030426 // growth cone // inferred from electronic annotation /// 0030426 // growth cone // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded /// 0032797 // SMN complex // inferred from electronic annotation /// 0032797 // SMN complex // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0000049 // tRNA binding // not recorded /// 0000049 // tRNA binding // inferred from sequence or structural similarity /// 0000049 // tRNA binding // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003702 // RNA polymerase II transcription factor activity // inferred from direct assay /// 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0008094 // DNA-dependent ATPase activity // inferred from sequence or structural similarity /// 0008094 // DNA-dependent ATPase activity // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008186 // RNA-dependent ATPase activity // not recorded /// 0008186 // RNA-dependent ATPase activity // inferred from sequence or structural similarity /// 0008186 // RNA-dependent ATPase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0032575 // ATP-dependent 5'-3' RNA helicase activity // not recorded /// 0032575 // ATP-dependent 5'-3' RNA helicase activity // inferred from sequence or structural similarity /// 0032575 // ATP-dependent 5'-3' RNA helicase activity // inferred from electronic annotation /// 0043022 // ribosome binding // not recorded /// 0043022 // ribosome binding // inferred from sequence or structural similarity /// 0043022 // ribosome binding // inferred from electronic annotation /// 0043141 // ATP-dependent 5'-3' DNA helicase activity // not recorded /// 0043141 // ATP-dependent 5'-3' DNA helicase activity // inferred from sequence or structural similarity /// 0043141 // ATP-dependent 5'-3' DNA helicase activity // inferred from electronic annotation /// 0043621 // protein self-association // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1368856_at NM_031514 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031514.1 /DB_XREF=gi:13928695 /GEN=Jak2 /FEA=FLmRNA /CNT=16 /TID=Rn.18909.1 /TIER=FL /STK=2 /UG=Rn.18909 /LL=24514 /DEF=Rattus norvegicus Janus kinase 2 (a protein tyrosine kinase) (Jak2), mRNA. /PROD=janus kinase 2 (a protein tyrosine kinase) /FL=gb:U13396.1 gb:NM_031514.1 NM_031514 Janus kinase 2 Jak2 24514 NM_031514 0000186 // activation of MAPKK activity // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from sequence or structural similarity /// 0007165 // signal transduction // inferred from electronic annotation /// 0007167 // enzyme linked receptor protein signaling pathway // inferred from electronic annotation /// 0007167 // enzyme linked receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0007243 // intracellular protein kinase cascade // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007259 // JAK-STAT cascade // inferred from direct assay /// 0007259 // JAK-STAT cascade // not recorded /// 0007259 // JAK-STAT cascade // inferred from electronic annotation /// 0007260 // tyrosine phosphorylation of STAT protein // not recorded /// 0007260 // tyrosine phosphorylation of STAT protein // inferred from electronic annotation /// 0007262 // STAT protein nuclear translocation // inferred from electronic annotation /// 0007262 // STAT protein nuclear translocation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008631 // induction of apoptosis by oxidative stress // inferred from mutant phenotype /// 0009755 // hormone-mediated signaling pathway // inferred from direct assay /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from sequence or structural similarity /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0022408 // negative regulation of cell-cell adhesion // inferred from mutant phenotype /// 0030099 // myeloid cell differentiation // not recorded /// 0030099 // myeloid cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // not recorded /// 0030218 // erythrocyte differentiation // inferred from sequence or structural similarity /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0031103 // axon regeneration // inferred from mutant phenotype /// 0031959 // mineralocorticoid receptor signaling pathway // inferred from mutant phenotype /// 0032024 // positive regulation of insulin secretion // inferred from mutant phenotype /// 0032516 // positive regulation of phosphoprotein phosphatase activity // inferred from mutant phenotype /// 0032731 // positive regulation of interleukin-1 beta production // inferred from mutant phenotype /// 0033160 // positive regulation of protein import into nucleus, translocation // inferred from mutant phenotype /// 0033194 // response to hydroperoxide // inferred from mutant phenotype /// 0035409 // histone H3-Y41 phosphorylation // not recorded /// 0035409 // histone H3-Y41 phosphorylation // inferred from sequence or structural similarity /// 0035409 // histone H3-Y41 phosphorylation // inferred from electronic annotation /// 0042503 // tyrosine phosphorylation of Stat3 protein // inferred from mutant phenotype /// 0042508 // tyrosine phosphorylation of Stat1 protein // inferred from mutant phenotype /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // inferred from electronic annotation /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // not recorded /// 0042523 // positive regulation of tyrosine phosphorylation of Stat5 protein // inferred from electronic annotation /// 0042523 // positive regulation of tyrosine phosphorylation of Stat5 protein // not recorded /// 0042977 // activation of JAK2 kinase activity // not recorded /// 0042977 // activation of JAK2 kinase activity // inferred from sequence or structural similarity /// 0042977 // activation of JAK2 kinase activity // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043388 // positive regulation of DNA binding // inferred from mutant phenotype /// 0043392 // negative regulation of DNA binding // inferred from electronic annotation /// 0043392 // negative regulation of DNA binding // not recorded /// 0043526 // neuroprotection // inferred from mutant phenotype /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from mutant phenotype /// 0045597 // positive regulation of cell differentiation // inferred from mutant phenotype /// 0045822 // negative regulation of heart contraction // inferred from mutant phenotype /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0046677 // response to antibiotic // not recorded /// 0046777 // protein autophosphorylation // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from sequence or structural similarity /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from mutant phenotype /// 0050729 // positive regulation of inflammatory response // inferred from mutant phenotype /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050867 // positive regulation of cell activation // inferred from mutant phenotype /// 0051091 // positive regulation of transcription factor activity // inferred from mutant phenotype /// 0060397 // JAK-STAT cascade involved in growth hormone signaling pathway // not recorded /// 0060397 // JAK-STAT cascade involved in growth hormone signaling pathway // inferred from sequence or structural similarity /// 0060397 // JAK-STAT cascade involved in growth hormone signaling pathway // inferred from electronic annotation /// 0060399 // positive regulation of growth hormone receptor signaling pathway // inferred from electronic annotation /// 0060399 // positive regulation of growth hormone receptor signaling pathway // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005901 // caveola // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from direct assay /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from mutant phenotype /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from sequence or structural similarity /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005131 // growth hormone receptor binding // inferred from physical interaction /// 0005143 // interleukin-12 receptor binding // inferred from electronic annotation /// 0005143 // interleukin-12 receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0033130 // acetylcholine receptor binding // inferred from physical interaction /// 0035401 // histone kinase activity (H3-Y41 specific) // not recorded /// 0035401 // histone kinase activity (H3-Y41 specific) // inferred from sequence or structural similarity /// 0035401 // histone kinase activity (H3-Y41 specific) // inferred from electronic annotation /// 0042169 // SH2 domain binding // inferred from electronic annotation /// 0042169 // SH2 domain binding // not recorded /// 0042393 // histone binding // not recorded /// 0042393 // histone binding // inferred from sequence or structural similarity /// 0042393 // histone binding // inferred from electronic annotation /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction /// 0043560 // insulin receptor substrate binding // inferred from physical interaction /// 0051428 // peptide hormone receptor binding // inferred from physical interaction 1368857_at NM_019276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019276.2 /DB_XREF=gi:19923683 /GEN=Ugt8 /FEA=FLmRNA /CNT=15 /TID=Rn.9744.1 /TIER=FL /STK=2 /UG=Rn.9744 /LL=50555 /DEF=Rattus norvegicus UDP-glucuronosyltransferase 8 (Ugt8), mRNA. /PROD=UDP-glucuronosyltransferase 8 /FL=gb:L21698.1 gb:U07683.1 gb:NM_019276.2 NM_019276 UDP glycosyltransferase 8 Ugt8 50555 NM_019276 0006688 // glycosphingolipid biosynthetic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0042552 // myelination // traceable author statement 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003851 // 2-hydroxyacylsphingosine 1-beta-galactosyltransferase activity // inferred from electronic annotation /// 0008489 // UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity // inferred from mutant phenotype /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1368858_at L21698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L21698.1 /DB_XREF=gi:437665 /FEA=FLmRNA /CNT=15 /TID=Rn.9744.1 /TIER=FL /STK=1 /UG=Rn.9744 /LL=50555 /UG_GENE=Ugt8 /DEF=Rat ceramide UDP-galactosyltransferase mRNA, complete cds. /PROD=ceramide UDP-galactosyltransferase /FL=gb:L21698.1 gb:U07683.1 gb:NM_019276.2 L21698 UDP glycosyltransferase 8 Ugt8 50555 NM_019276 0006688 // glycosphingolipid biosynthetic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0042552 // myelination // traceable author statement 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003851 // 2-hydroxyacylsphingosine 1-beta-galactosyltransferase activity // inferred from electronic annotation /// 0008489 // UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity // inferred from mutant phenotype /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1368859_at NM_017038 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017038.1 /DB_XREF=gi:8394011 /GEN=Ppm1a /FEA=FLmRNA /CNT=15 /TID=Rn.37403.1 /TIER=FL /STK=2 /UG=Rn.37403 /LL=24666 /DEF=Rattus norvegicus Protein phosphatase type 1A (formely 2C), Mg-dependent, alpha isoform (Ppm1a), mRNA. /PROD=protein phosphatase type 1A (formely 2C),Mg-dependent, alpha isoform /FL=gb:J04503.1 gb:NM_017038.1 NM_017038 protein phosphatase 1A, magnesium dependent, alpha isoform Ppm1a 24666 NM_017038 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030177 // positive regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005891 // voltage-gated calcium channel complex // inferred from direct assay /// 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // not recorded /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368860_at NM_017180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017180.1 /DB_XREF=gi:8394428 /GEN=Tdag /FEA=FLmRNA /CNT=13 /TID=Rn.40778.1 /TIER=FL /STK=2 /UG=Rn.40778 /LL=29380 /DEF=Rattus norvegicus T-cell death associated gene (Tdag), mRNA. /PROD=T-cell death associated gene /FL=gb:AF192802.1 gb:NM_017180.1 NM_017180 pleckstrin homology-like domain, family A, member 1 Phlda1 29380 NM_017180 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from direct assay /// 0045210 // FasL biosynthetic process // inferred from electronic annotation /// 0045210 // FasL biosynthetic process // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368861_a_at NM_017190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017190.1 /DB_XREF=gi:8393741 /GEN=Mag /FEA=FLmRNA /CNT=12 /TID=Rn.9668.1 /TIER=FL /STK=2 /UG=Rn.9668 /LL=29409 /DEF=Rattus norvegicus Myelin-associated glycoprotein (Mag), mRNA. /PROD=myelin-associated glycoprotein /FL=gb:NM_017190.1 gb:M16800.1 gb:M14871.1 NM_017190 myelin-associated glycoprotein Mag 29409 NM_017190 0007155 // cell adhesion // inferred from electronic annotation /// 0050770 // regulation of axonogenesis // not recorded /// 0050771 // negative regulation of axonogenesis // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043209 // myelin sheath // inferred from electronic annotation /// 0043209 // myelin sheath // not recorded 0005529 // sugar binding // inferred from electronic annotation 1368862_at NM_033230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_033230.1 /DB_XREF=gi:15100163 /GEN=Akt1 /FEA=FLmRNA /CNT=10 /TID=Rn.11422.1 /TIER=FL /STK=2 /UG=Rn.11422 /LL=24185 /DEF=Rattus norvegicus Murine thymoma viral (v-akt) oncogene homolog 1 (Akt1), mRNA. /PROD=murine thymoma viral (v-akt) oncogene homolog 1 /FL=gb:NM_033230.1 gb:D30040.1 NM_033230 v-akt murine thymoma viral oncogene homolog 1 Akt1 24185 NM_033230 0000060 // protein import into nucleus, translocation // inferred from electronic annotation /// 0000060 // protein import into nucleus, translocation // not recorded /// 0001893 // maternal placenta development // inferred from electronic annotation /// 0001893 // maternal placenta development // not recorded /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // not recorded /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005978 // glycogen biosynthetic process // inferred from mutant phenotype /// 0005978 // glycogen biosynthetic process // inferred from electronic annotation /// 0005979 // regulation of glycogen biosynthetic process // not recorded /// 0005979 // regulation of glycogen biosynthetic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006412 // translation // inferred from mutant phenotype /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from direct assay /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0006916 // anti-apoptosis // traceable author statement /// 0006924 // activation-induced cell death of T cells // inferred from electronic annotation /// 0006924 // activation-induced cell death of T cells // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0007165 // signal transduction // inferred from direct assay /// 0007281 // germ cell development // inferred from electronic annotation /// 0007281 // germ cell development // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // inferred from mutant phenotype /// 0008286 // insulin receptor signaling pathway // not recorded /// 0008286 // insulin receptor signaling pathway // inferred from sequence or structural similarity /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0008637 // apoptotic mitochondrial changes // inferred from electronic annotation /// 0008637 // apoptotic mitochondrial changes // not recorded /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from electronic annotation /// 0009725 // response to hormone stimulus // not recorded /// 0010748 // negative regulation of plasma membrane long-chain fatty acid transport // inferred from electronic annotation /// 0010748 // negative regulation of plasma membrane long-chain fatty acid transport // not recorded /// 0010765 // positive regulation of sodium ion transport // inferred from electronic annotation /// 0010765 // positive regulation of sodium ion transport // not recorded /// 0010907 // positive regulation of glucose metabolic process // inferred from electronic annotation /// 0010907 // positive regulation of glucose metabolic process // not recorded /// 0010975 // regulation of neuron projection development // not recorded /// 0010975 // regulation of neuron projection development // inferred from sequence or structural similarity /// 0010975 // regulation of neuron projection development // inferred from electronic annotation /// 0015758 // glucose transport // inferred from electronic annotation /// 0015758 // glucose transport // not recorded /// 0016310 // phosphorylation // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0018105 // peptidyl-serine phosphorylation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // not recorded /// 0030030 // cell projection organization // inferred from direct assay /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0030163 // protein catabolic process // not recorded /// 0030307 // positive regulation of cell growth // inferred from direct assay /// 0030307 // positive regulation of cell growth // not recorded /// 0030307 // positive regulation of cell growth // inferred from electronic annotation /// 0030334 // regulation of cell migration // inferred from mutant phenotype /// 0031659 // positive regulation of cyclin-dependent protein kinase activity involved in G1/S // inferred from electronic annotation /// 0031659 // positive regulation of cyclin-dependent protein kinase activity involved in G1/S // not recorded /// 0031999 // negative regulation of fatty acid beta-oxidation // inferred from electronic annotation /// 0031999 // negative regulation of fatty acid beta-oxidation // not recorded /// 0032094 // response to food // inferred from electronic annotation /// 0032094 // response to food // not recorded /// 0032270 // positive regulation of cellular protein metabolic process // inferred from mutant phenotype /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from mutant phenotype /// 0032869 // cellular response to insulin stimulus // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0032880 // regulation of protein localization // inferred from electronic annotation /// 0032880 // regulation of protein localization // not recorded /// 0034405 // response to fluid shear stress // inferred from electronic annotation /// 0034405 // response to fluid shear stress // not recorded /// 0042640 // anagen // inferred from electronic annotation /// 0042640 // anagen // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043491 // protein kinase B signaling cascade // inferred from electronic annotation /// 0043491 // protein kinase B signaling cascade // not recorded /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045429 // positive regulation of nitric oxide biosynthetic process // not recorded /// 0045600 // positive regulation of fat cell differentiation // inferred from electronic annotation /// 0045600 // positive regulation of fat cell differentiation // not recorded /// 0045725 // positive regulation of glycogen biosynthetic process // inferred from electronic annotation /// 0045725 // positive regulation of glycogen biosynthetic process // not recorded /// 0045792 // negative regulation of cell size // inferred from direct assay /// 0045884 // regulation of survival gene product expression // inferred from electronic annotation /// 0045884 // regulation of survival gene product expression // not recorded /// 0046326 // positive regulation of glucose import // inferred from electronic annotation /// 0046326 // positive regulation of glucose import // not recorded /// 0046329 // negative regulation of JNK cascade // inferred from direct assay /// 0046889 // positive regulation of lipid biosynthetic process // inferred from electronic annotation /// 0046889 // positive regulation of lipid biosynthetic process // not recorded /// 0048009 // insulin-like growth factor receptor signaling pathway // not recorded /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0051000 // positive regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051000 // positive regulation of nitric-oxide synthase activity // not recorded /// 0060709 // glycogen cell development involved in embryonic placenta development // inferred from electronic annotation /// 0060709 // glycogen cell development involved in embryonic placenta development // not recorded /// 0060716 // labyrinthine layer blood vessel development // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // not recorded /// 0070141 // response to UV-A // inferred from electronic annotation /// 0070141 // response to UV-A // not recorded /// 0090004 // positive regulation of establishment of protein localization in plasma membrane // inferred from electronic annotation /// 0090004 // positive regulation of establishment of protein localization in plasma membrane // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005819 // spindle // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0015630 // microtubule cytoskeleton // not recorded /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from electronic annotation /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // not recorded /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0030235 // nitric-oxide synthase regulator activity // inferred from electronic annotation /// 0030235 // nitric-oxide synthase regulator activity // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // inferred from electronic annotation /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // not recorded 1368863_at NM_053507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053507.1 /DB_XREF=gi:16758265 /GEN=Nme3 /FEA=FLmRNA /CNT=10 /TID=Rn.8785.1 /TIER=FL /STK=2 /UG=Rn.8785 /LL=85269 /DEF=Rattus norvegicus expressed in non-metastatic cells 3, protein (nucleoside diphosphate kinase) (Nme3), mRNA. /PROD=expressed in non-metastatic cells 3, protein(nucleoside diphosp /FL=gb:AY017337.1 gb:NM_053507.1 NM_053507 non-metastatic cells 3, protein expressed in Nme3 85269 NM_053507 0006183 // GTP biosynthetic process // inferred from electronic annotation /// 0006228 // UTP biosynthetic process // inferred from electronic annotation /// 0006241 // CTP biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004550 // nucleoside diphosphate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368864_at NM_023974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023974.1 /DB_XREF=gi:13027427 /GEN=LOC66030 /FEA=FLmRNA /CNT=23 /TID=Rn.64518.1 /TIER=FL /STK=2 /UG=Rn.64518 /LL=66030 /DEF=Rattus norvegicus synaptorin (LOC66030), mRNA. /PROD=synaptoporin /FL=gb:NM_023974.1 gb:AF306459.1 NM_023974 synaptoporin Synpr 66030 NM_023974 0006810 // transport // inferred from electronic annotation 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // non-traceable author statement /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1368865_at BG666364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666364 /DB_XREF=gi:13888286 /DB_XREF=DRACHE06 /CLONE=DRACHE06 /FEA=FLmRNA /CNT=23 /TID=Rn.64518.1 /TIER=ConsEnd /STK=2 /UG=Rn.64518 /LL=66030 /UG_GENE=LOC66030 /UG_TITLE=synaptorin /FL=gb:NM_023974.1 gb:AF306459.1 BG666364 synaptoporin Synpr 66030 NM_023974 0006810 // transport // inferred from electronic annotation 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // non-traceable author statement /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1368866_at NM_021597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021597.1 /DB_XREF=gi:11024679 /GEN=Gerp95 /FEA=FLmRNA /CNT=19 /TID=Rn.35512.1 /TIER=FL /STK=2 /UG=Rn.35512 /LL=59117 /DEF=Rattus norvegicus GERp95 (Gerp95), mRNA. /PROD=GERp95 /FL=gb:NM_021597.1 gb:AF195534.1 NM_021597 eukaryotic translation initiation factor 2C, 2 Eif2c2 59117 NM_021597 0006350 // transcription // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0030154 // cell differentiation // non-traceable author statement /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0031054 // pre-microRNA processing // not recorded /// 0031054 // pre-microRNA processing // inferred from sequence or structural similarity /// 0031054 // pre-microRNA processing // inferred from electronic annotation /// 0035278 // negative regulation of translation involved in gene silencing by miRNA // not recorded /// 0035278 // negative regulation of translation involved in gene silencing by miRNA // inferred from sequence or structural similarity /// 0035278 // negative regulation of translation involved in gene silencing by miRNA // inferred from electronic annotation /// 0035279 // mRNA cleavage involved in gene silencing by miRNA // not recorded /// 0035279 // mRNA cleavage involved in gene silencing by miRNA // inferred from sequence or structural similarity /// 0035279 // mRNA cleavage involved in gene silencing by miRNA // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045947 // negative regulation of translational initiation // not recorded /// 0045947 // negative regulation of translational initiation // inferred from sequence or structural similarity /// 0045947 // negative regulation of translational initiation // inferred from electronic annotation 0000932 // cytoplasmic mRNA processing body // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005845 // mRNA cap binding complex // not recorded /// 0005845 // mRNA cap binding complex // inferred from sequence or structural similarity /// 0005845 // mRNA cap binding complex // inferred from electronic annotation /// 0016442 // RNA-induced silencing complex // not recorded /// 0016442 // RNA-induced silencing complex // inferred from sequence or structural similarity /// 0016442 // RNA-induced silencing complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0035068 // micro-ribonucleoprotein complex // not recorded /// 0035068 // micro-ribonucleoprotein complex // inferred from sequence or structural similarity /// 0035068 // micro-ribonucleoprotein complex // inferred from electronic annotation 0000340 // RNA 7-methylguanosine cap binding // not recorded /// 0000340 // RNA 7-methylguanosine cap binding // inferred from sequence or structural similarity /// 0000340 // RNA 7-methylguanosine cap binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016891 // endoribonuclease activity, producing 5'-phosphomonoesters // inferred from electronic annotation /// 0035197 // siRNA binding // not recorded /// 0035197 // siRNA binding // inferred from sequence or structural similarity /// 0035197 // siRNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070551 // endoribonuclease activity, cleaving siRNA-paired mRNA // not recorded /// 0070551 // endoribonuclease activity, cleaving siRNA-paired mRNA // inferred from sequence or structural similarity /// 0070551 // endoribonuclease activity, cleaving siRNA-paired mRNA // inferred from electronic annotation 1368867_at BF281131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281131 /DB_XREF=gi:11212285 /DB_XREF=EST445806 /CLONE=RGIAB46 /FEA=FLmRNA /CNT=19 /TID=Rn.35512.1 /TIER=Stack /STK=8 /UG=Rn.35512 /LL=59117 /UG_GENE=Gerp95 /UG_TITLE=GERp95 /FL=gb:NM_021597.1 gb:AF195534.1 BF281131 eukaryotic translation initiation factor 2C, 2 Eif2c2 59117 NM_021597 0006350 // transcription // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0030154 // cell differentiation // non-traceable author statement /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0031054 // pre-microRNA processing // not recorded /// 0031054 // pre-microRNA processing // inferred from sequence or structural similarity /// 0031054 // pre-microRNA processing // inferred from electronic annotation /// 0035278 // negative regulation of translation involved in gene silencing by miRNA // not recorded /// 0035278 // negative regulation of translation involved in gene silencing by miRNA // inferred from sequence or structural similarity /// 0035278 // negative regulation of translation involved in gene silencing by miRNA // inferred from electronic annotation /// 0035279 // mRNA cleavage involved in gene silencing by miRNA // not recorded /// 0035279 // mRNA cleavage involved in gene silencing by miRNA // inferred from sequence or structural similarity /// 0035279 // mRNA cleavage involved in gene silencing by miRNA // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045947 // negative regulation of translational initiation // not recorded /// 0045947 // negative regulation of translational initiation // inferred from sequence or structural similarity /// 0045947 // negative regulation of translational initiation // inferred from electronic annotation 0000932 // cytoplasmic mRNA processing body // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005845 // mRNA cap binding complex // not recorded /// 0005845 // mRNA cap binding complex // inferred from sequence or structural similarity /// 0005845 // mRNA cap binding complex // inferred from electronic annotation /// 0016442 // RNA-induced silencing complex // not recorded /// 0016442 // RNA-induced silencing complex // inferred from sequence or structural similarity /// 0016442 // RNA-induced silencing complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0035068 // micro-ribonucleoprotein complex // not recorded /// 0035068 // micro-ribonucleoprotein complex // inferred from sequence or structural similarity /// 0035068 // micro-ribonucleoprotein complex // inferred from electronic annotation 0000340 // RNA 7-methylguanosine cap binding // not recorded /// 0000340 // RNA 7-methylguanosine cap binding // inferred from sequence or structural similarity /// 0000340 // RNA 7-methylguanosine cap binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016891 // endoribonuclease activity, producing 5'-phosphomonoesters // inferred from electronic annotation /// 0035197 // siRNA binding // not recorded /// 0035197 // siRNA binding // inferred from sequence or structural similarity /// 0035197 // siRNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070551 // endoribonuclease activity, cleaving siRNA-paired mRNA // not recorded /// 0070551 // endoribonuclease activity, cleaving siRNA-paired mRNA // inferred from sequence or structural similarity /// 0070551 // endoribonuclease activity, cleaving siRNA-paired mRNA // inferred from electronic annotation 1368868_at NM_057103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057103.1 /DB_XREF=gi:16930812 /GEN=Akap12 /FEA=FLmRNA /CNT=18 /TID=Rn.42891.1 /TIER=FL /STK=2 /UG=Rn.42891 /LL=83425 /DEF=Rattus norvegicus A kinase (PRKA) anchor protein (gravin) 12 (Akap12), mRNA. /PROD=A kinase (PRKA) anchor protein (gravin) 12 /FL=gb:U41453.1 gb:NM_057103.1 NM_057103 A kinase (PRKA) anchor protein 12 Akap12 83425 NM_001033653 /// NM_057103 0006605 // protein targeting // inferred from electronic annotation /// 0007165 // signal transduction // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0010739 // positive regulation of protein kinase A signaling cascade // inferred from electronic annotation /// 0010739 // positive regulation of protein kinase A signaling cascade // not recorded /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008179 // adenylate cyclase binding // inferred from electronic annotation /// 0008179 // adenylate cyclase binding // not recorded 1368869_at BG663107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663107 /DB_XREF=gi:13885029 /DB_XREF=DRA08D03 /CLONE=DRA08D03 /FEA=FLmRNA /CNT=18 /TID=Rn.42891.1 /TIER=Stack /STK=8 /UG=Rn.42891 /LL=83425 /UG_GENE=Akap12 /UG_TITLE=A kinase (PRKA) anchor protein (gravin) 12 /FL=gb:U41453.1 gb:NM_057103.1 BG663107 A kinase (PRKA) anchor protein 12 Akap12 83425 NM_001033653 /// NM_057103 0006605 // protein targeting // inferred from electronic annotation /// 0007165 // signal transduction // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0010739 // positive regulation of protein kinase A signaling cascade // inferred from electronic annotation /// 0010739 // positive regulation of protein kinase A signaling cascade // not recorded /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008179 // adenylate cyclase binding // inferred from electronic annotation /// 0008179 // adenylate cyclase binding // not recorded 1368870_at NM_013060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013060.1 /DB_XREF=gi:6981071 /GEN=Id2 /FEA=FLmRNA /CNT=18 /TID=Rn.3272.1 /TIER=FL /STK=2 /UG=Rn.3272 /LL=25587 /DEF=Rattus norvegicus Inhibitor of DNA binding 2, dominant negative helix-loop-helix protein (Id2), mRNA. /PROD=inhibitor of DNA binding 2, dominant negativehelix-loop-helix protein /FL=gb:D10863.1 gb:NM_013060.1 NM_013060 inhibitor of DNA binding 2 Id2 25587 NM_013060 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0003166 // bundle of His development // inferred from electronic annotation /// 0003166 // bundle of His development // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0010628 // positive regulation of gene expression // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0033598 // mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0033598 // mammary gland epithelial cell proliferation // not recorded /// 0043353 // enucleate erythrocyte differentiation // inferred from electronic annotation /// 0043353 // enucleate erythrocyte differentiation // not recorded /// 0043433 // negative regulation of transcription factor activity // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045651 // positive regulation of macrophage differentiation // inferred from electronic annotation /// 0045651 // positive regulation of macrophage differentiation // not recorded /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045787 // positive regulation of cell cycle // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0048557 // embryonic digestive tract morphogenesis // not recorded /// 0048663 // neuron fate commitment // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded /// 0060749 // mammary gland alveolus development // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // not recorded /// 0061030 // epithelial cell differentiation involved in mammary gland alveolus development // not recorded /// 0061031 // endodermal digestive tract morphogenesis // not recorded /// 0071285 // cellular response to lithium ion // inferred from electronic annotation /// 0071285 // cellular response to lithium ion // not recorded 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0043234 // protein complex // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0030528 // transcription regulator activity // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred by curator 1368871_at NM_053887 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053887.1 /DB_XREF=gi:16758759 /GEN=Map3k1 /FEA=FLmRNA /CNT=15 /TID=Rn.11081.1 /TIER=FL /STK=2 /UG=Rn.11081 /LL=116667 /DEF=Rattus norvegicus mitogen activated protein kinase kinase kinase 1 (Map3k1), mRNA. /PROD=mitogen activated protein kinase kinase kinase1 /FL=gb:NM_053887.1 gb:U48596.1 NM_053887 mitogen activated protein kinase kinase kinase 1 Map3k1 116667 NM_053887 0000165 // MAPKKK cascade // inferred from direct assay /// 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000186 // activation of MAPKK activity // inferred from direct assay /// 0000209 // protein polyubiquitination // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006970 // response to osmotic stress // inferred from mutant phenotype /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded /// 0007254 // JNK cascade // not recorded /// 0007254 // JNK cascade // inferred from electronic annotation /// 0007256 // activation of JNKK activity // inferred from direct assay /// 0007257 // activation of JUN kinase activity // inferred from electronic annotation /// 0007257 // activation of JUN kinase activity // not recorded /// 0008637 // apoptotic mitochondrial changes // inferred from electronic annotation /// 0008637 // apoptotic mitochondrial changes // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from direct assay /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0030334 // regulation of cell migration // not recorded /// 0030838 // positive regulation of actin filament polymerization // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // not recorded /// 0032232 // negative regulation of actin filament bundle assembly // inferred from direct assay /// 0042060 // wound healing // inferred from electronic annotation /// 0042060 // wound healing // not recorded /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from genetic interaction /// 0043010 // camera-type eye development // inferred from electronic annotation /// 0043010 // camera-type eye development // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043406 // positive regulation of MAP kinase activity // inferred from direct assay /// 0043507 // positive regulation of JUN kinase activity // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from mutant phenotype /// 0050434 // positive regulation of viral transcription // inferred from direct assay /// 0051259 // protein oligomerization // inferred from direct assay 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004706 // JUN kinase kinase kinase activity // inferred from direct assay /// 0004709 // MAP kinase kinase kinase activity // inferred from electronic annotation /// 0004710 // MAP/ERK kinase kinase activity // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008432 // JUN kinase binding // inferred from physical interaction /// 0008545 // JUN kinase kinase activity // inferred from electronic annotation /// 0008545 // JUN kinase kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0031434 // mitogen-activated protein kinase kinase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction /// 0046625 // sphingolipid binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051019 // mitogen-activated protein kinase binding // inferred from physical interaction 1368872_a_at NM_053309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053309.1 /DB_XREF=gi:16758005 /GEN=Homer2 /FEA=FLmRNA /CNT=15 /TID=Rn.30014.1 /TIER=FL /STK=2 /UG=Rn.30014 /LL=29547 /DEF=Rattus norvegicus homer, neuronal immediate early gene, 2 (Homer2), mRNA. /PROD=homer, neuronal immediate early gene, 2 /FL=gb:AB007689.1 gb:NM_053309.1 NM_053309 homer homolog 2 (Drosophila) Homer2 29547 NM_053309 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0003779 // actin binding // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030160 // GKAP/Homer scaffold activity // not recorded /// 0035256 // metabotropic glutamate receptor binding // inferred from physical interaction 1368873_at NM_012581 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012581.1 /DB_XREF=gi:6981037 /GEN=Hoxa2 /FEA=FLmRNA /CNT=13 /TID=Rn.11240.1 /TIER=FL /STK=2 /UG=Rn.11240 /LL=24452 /DEF=Rattus norvegicus homeobox A2 (Hoxa2), mRNA. /PROD=homeobox A2 /FL=gb:M91802.1 gb:NM_012581.1 NM_012581 homeo box A2 Hoxa2 24452 NM_012581 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001709 // cell fate determination // inferred from electronic annotation /// 0001709 // cell fate determination // not recorded /// 0002076 // osteoblast development // inferred from electronic annotation /// 0002076 // osteoblast development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007379 // segment specification // inferred from electronic annotation /// 0007379 // segment specification // not recorded /// 0007389 // pattern specification process // not recorded /// 0007389 // pattern specification process // inferred from electronic annotation /// 0008045 // motor axon guidance // inferred from electronic annotation /// 0008045 // motor axon guidance // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0021568 // rhombomere 2 development // inferred from electronic annotation /// 0021568 // rhombomere 2 development // not recorded /// 0021569 // rhombomere 3 development // not recorded /// 0021569 // rhombomere 3 development // inferred from electronic annotation /// 0021658 // rhombomere 3 morphogenesis // inferred from electronic annotation /// 0021658 // rhombomere 3 morphogenesis // not recorded /// 0035284 // brain segmentation // inferred from electronic annotation /// 0035284 // brain segmentation // not recorded /// 0042474 // middle ear morphogenesis // inferred from electronic annotation /// 0042474 // middle ear morphogenesis // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048703 // embryonic viscerocranium morphogenesis // inferred from electronic annotation /// 0048703 // embryonic viscerocranium morphogenesis // not recorded /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1368874_a_at AB050011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB050011.1 /DB_XREF=gi:13646953 /GEN=mafG-2 /FEA=FLmRNA /CNT=1 /TID=Rn.17361.2 /TIER=FL /STK=1 /UG=Rn.17361 /LL=64188 /DEF=Rattus norvegicus mRNA for MafG-2, complete cds. /PROD=MafG-2 /FL=gb:AB050011.1 AB050011 v-maf musculoaponeurotic fibrosarcoma oncogene homolog G (avian) Mafg 64188 NM_022386 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0030534 // adult behavior // inferred from electronic annotation /// 0030534 // adult behavior // not recorded /// 0030641 // regulation of cellular pH // inferred from direct assay /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045604 // regulation of epidermal cell differentiation // inferred from electronic annotation /// 0045604 // regulation of epidermal cell differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1368875_a_at NM_053846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053846.1 /DB_XREF=gi:16758705 /GEN=Nrxn2 /FEA=FLmRNA /CNT=12 /TID=Rn.11282.1 /TIER=FL /STK=2 /UG=Rn.11282 /LL=116595 /DEF=Rattus norvegicus neurexin 2 (Nrxn2), mRNA. /PROD=neurexin 2 /FL=gb:M96376.1 gb:NM_053846.1 NM_053846 neurexin 2 Nrxn2 116595 NM_053846 0007155 // cell adhesion // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007269 // neurotransmitter secretion // not recorded /// 0007416 // synapse assembly // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005246 // calcium channel regulator activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1368876_a_at BE111779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111779 /DB_XREF=gi:8503884 /DB_XREF=UI-R-BJ1-avx-g-01-0-UI.s1 /CLONE=UI-R-BJ1-avx-g-01-0-UI /FEA=FLmRNA /CNT=12 /TID=Rn.11282.1 /TIER=Stack /STK=7 /UG=Rn.11282 /LL=116595 /UG_GENE=Nrxn2 /UG_TITLE=neurexin 2 /FL=gb:M96376.1 gb:NM_053846.1 BE111779 neurexin 2 Nrxn2 116595 NM_053846 0007155 // cell adhesion // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007269 // neurotransmitter secretion // not recorded /// 0007416 // synapse assembly // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005246 // calcium channel regulator activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1368877_at NM_052798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_052798.1 /DB_XREF=gi:16258808 /GEN=Zfp354a /FEA=FLmRNA /CNT=11 /TID=Rn.11049.1 /TIER=FL /STK=2 /UG=Rn.11049 /LL=24522 /DEF=Rattus norvegicus zinc finger protein 354A (Zfp354a), mRNA. /PROD=zinc finger protein 354A /FL=gb:M96548.1 gb:NM_052798.1 NM_052798 zinc finger protein 354A Zfp354a 24522 NM_052798 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001822 // kidney development // inferred from expression pattern /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007576 // nucleolar fragmentation // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051593 // response to folic acid // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016565 // general transcriptional repressor activity // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation 1368878_at NM_053539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053539.1 /DB_XREF=gi:16758305 /GEN=Idi1 /FEA=FLmRNA /CNT=11 /TID=Rn.10780.1 /TIER=FL /STK=2 /UG=Rn.10780 /LL=89784 /DEF=Rattus norvegicus isopentenyl-diphosphate delta isomerase (Idi1), mRNA. /PROD=isopentenyl-diphosphate delta isomerase /FL=gb:NM_053539.1 gb:AF003835.1 NM_053539 isopentenyl-diphosphate delta isomerase 1 Idi1 89784 NM_053539 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0016117 // carotenoid biosynthetic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004452 // isopentenyl-diphosphate delta-isomerase activity // traceable author statement /// 0004452 // isopentenyl-diphosphate delta-isomerase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368879_a_at AF413212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF413212.1 /DB_XREF=gi:19033102 /FEA=mRNA /CNT=1 /TID=Rn.11268.2 /TIER=ConsEnd /STK=0 /UG=Rn.11268 /LL=50664 /UG_GENE=RATBPGTPC /DEF=Rattus norvegicus GOA1B splice variant mRNA, partial cds; alternatively spliced. /PROD=GOA1B splice variant AF413212 guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O Gnao1 50664 NM_017327 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007212 // dopamine receptor signaling pathway // inferred from electronic annotation /// 0007212 // dopamine receptor signaling pathway // not recorded /// 0007568 // aging // inferred from direct assay /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0008016 // regulation of heart contraction // not recorded /// 0009987 // cellular process // inferred from electronic annotation /// 0009987 // cellular process // not recorded /// 0010243 // response to organic nitrogen // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030900 // forebrain development // inferred from expression pattern /// 0031175 // neuron projection development // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043278 // response to morphine // inferred from expression pattern /// 0043547 // positive regulation of GTPase activity // inferred from mutant phenotype /// 0051926 // negative regulation of calcium ion transport // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0019717 // synaptosome // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0019003 // GDP binding // traceable author statement /// 0031821 // metabotropic serotonin receptor binding // inferred from physical interaction /// 0031852 // mu-type opioid receptor binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction 1368880_at AW251519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251519 /DB_XREF=gi:6595110 /DB_XREF=UI-R-BJ0-ado-b-03-0-UI.s1 /CLONE=UI-R-BJ0-ado-b-03-0-UI /FEA=FLmRNA /CNT=10 /TID=Rn.41052.1 /TIER=Stack /STK=7 /UG=Rn.41052 /LL=114523 /UG_GENE=Ntn1 /UG_TITLE=netrin 1 /FL=gb:AY028417.1 gb:NM_053731.1 AW251519 netrin 1 Ntn1 114523 NM_053731 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // non-traceable author statement /// 0007411 // axon guidance // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0030334 // regulation of cell migration // not recorded /// 0030517 // negative regulation of axon extension // inferred from electronic annotation /// 0030517 // negative regulation of axon extension // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0030879 // mammary gland development // not recorded /// 0040023 // establishment of nucleus localization // inferred from electronic annotation /// 0040023 // establishment of nucleus localization // not recorded /// 0045773 // positive regulation of axon extension // inferred from electronic annotation /// 0045773 // positive regulation of axon extension // not recorded /// 0060603 // mammary gland duct morphogenesis // inferred from electronic annotation /// 0060603 // mammary gland duct morphogenesis // not recorded 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from direct assay /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368881_at NM_019251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019251.1 /DB_XREF=gi:9506424 /GEN=Bet1 /FEA=FLmRNA /CNT=10 /TID=Rn.11078.1 /TIER=FL /STK=2 /UG=Rn.11078 /LL=29631 /DEF=Rattus norvegicus blocked early in transport 1 homolog (S.cerevisiae) (Bet1), mRNA. /PROD=golgi vesicular membrane trafficking proteinp18 /FL=gb:U42755.1 gb:NM_019251.1 NM_019251 blocked early in transport 1 homolog (S. cerevisiae) Bet1 29631 NM_019251 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0000139 // Golgi membrane // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005801 // cis-Golgi network // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031201 // SNARE complex // traceable author statement /// 0031985 // Golgi cisterna // inferred from direct assay 0005515 // protein binding // not recorded 1368882_at NM_019123 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019123.1 /DB_XREF=gi:9507098 /GEN=Siat7c /FEA=FLmRNA /CNT=9 /TID=Rn.34524.1 /TIER=FL /STK=2 /UG=Rn.34524 /LL=29758 /DEF=Rattus norvegicus sialyltransferase 7 ((alpha-N-acetylneuraminyl 2,3-betagalactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase) C (Siat7c), mRNA. /PROD=sialyltransferase 7 ((alpha-N-acetylneuraminyl2,3-betagalactosyl-1,3)-N-acetyl galactosaminidealpha-2,6-sialyltransferase) C /FL=gb:NM_019123.1 gb:L29554.1 NM_019123 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 St6galnac3 29758 NM_019123 0006486 // protein glycosylation // inferred from direct assay /// 0006486 // protein glycosylation // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation 0008373 // sialyltransferase activity // inferred from direct assay /// 0008373 // sialyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1368883_at NM_030868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030868.1 /DB_XREF=gi:13540696 /GEN=Nov /FEA=FLmRNA /CNT=9 /TID=Rn.29042.1 /TIER=FL /STK=2 /UG=Rn.29042 /LL=81526 /DEF=Rattus norvegicus NOV protein (Nov), mRNA. /PROD=NOV protein /FL=gb:NM_030868.1 gb:AF171936.1 NM_030868 nephroblastoma overexpressed gene Nov 81526 NM_030868 0001558 // regulation of cell growth // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0008083 // growth factor activity // traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation 1368884_at NM_022587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022587.1 /DB_XREF=gi:12018241 /GEN=U81295 /FEA=FLmRNA /CNT=25 /TID=Rn.17491.1 /TIER=FL /STK=2 /UG=Rn.17491 /LL=64519 /DEF=Rattus norvegicus ecto-apyrase (U81295), mRNA. /PROD=ecto-apyrase /FL=gb:U81295.1 gb:NM_022587.1 NM_022587 ectonucleoside triphosphate diphosphohydrolase 1 Entpd1 64519 NM_022587 0006200 // ATP catabolic process // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0009181 // purine ribonucleoside diphosphate catabolic process // not recorded /// 0030168 // platelet activation // not recorded 0005605 // basal lamina // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017110 // nucleoside-diphosphatase activity // not recorded /// 0017111 // nucleoside-triphosphatase activity // not recorded 1368885_at AI009808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009808 /DB_XREF=gi:4133118 /DB_XREF=EST204259 /CLONE=RLUBO72 /FEA=FLmRNA /CNT=25 /TID=Rn.17491.1 /TIER=ConsEnd /STK=4 /UG=Rn.17491 /LL=64519 /UG_GENE=U81295 /UG_TITLE=ecto-apyrase /FL=gb:U81295.1 gb:NM_022587.1 AI009808 1368886_at NM_013055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013055.1 /DB_XREF=gi:6981715 /GEN=Map3k12 /FEA=FLmRNA /CNT=17 /TID=Rn.23066.1 /TIER=FL /STK=2 /UG=Rn.23066 /LL=25579 /DEF=Rattus norvegicus Mitogen activated protein kinase 12 (Zipper (leucine) protein kinase) (Map3k12), mRNA. /PROD=mitogen activated protein kinase kinase kinase12 /FL=gb:D49785.1 gb:NM_013055.1 NM_013055 mitogen activated protein kinase kinase kinase 12 Map3k12 25579 NM_013055 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016572 // histone phosphorylation // not recorded /// 0016572 // histone phosphorylation // inferred from sequence or structural similarity /// 0016572 // histone phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0018105 // peptidyl-serine phosphorylation // inferred from sequence or structural similarity /// 0018105 // peptidyl-serine phosphorylation // inferred from electronic annotation /// 0018107 // peptidyl-threonine phosphorylation // not recorded /// 0018107 // peptidyl-threonine phosphorylation // inferred from sequence or structural similarity /// 0018107 // peptidyl-threonine phosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from sequence or structural similarity /// 0046777 // protein autophosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0030426 // growth cone // not recorded /// 0033267 // axon part // inferred from electronic annotation /// 0033267 // axon part // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004709 // MAP kinase kinase kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation 1368887_at NM_019161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019161.1 /DB_XREF=gi:9506476 /GEN=Cdh22 /FEA=FLmRNA /CNT=16 /TID=Rn.11397.1 /TIER=FL /STK=2 /UG=Rn.11397 /LL=29182 /DEF=Rattus norvegicus cadherin 22 (Cdh22), mRNA. /PROD=cadherin 22 /FL=gb:NM_019161.1 gb:D83349.1 NM_019161 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0016339 // calcium-dependent cell-cell adhesion // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1368888_a_at AJ242963 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ242963.1 /DB_XREF=gi:6822250 /GEN=nogo-C /FEA=FLmRNA /CNT=2 /TID=Rn.1348.3 /TIER=ConsEnd /STK=0 /UG=Rn.1348 /LL=83765 /DEF=Rattus norvegicus mRNA for Nogo-C protein. /PROD=Nogo-C protein /FL=gb:AF051335.1 AJ242963 reticulon 4 Rtn4 83765 NM_031831 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007568 // aging // inferred from expression pattern /// 0010977 // negative regulation of neuron projection development // inferred from direct assay /// 0014823 // response to activity // inferred from expression pattern /// 0019987 // negative regulation of anti-apoptosis // not recorded /// 0019987 // negative regulation of anti-apoptosis // inferred from sequence or structural similarity /// 0019987 // negative regulation of anti-apoptosis // inferred from electronic annotation /// 0021553 // olfactory nerve development // inferred from expression pattern /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0030334 // regulation of cell migration // not recorded /// 0030517 // negative regulation of axon extension // not recorded /// 0030517 // negative regulation of axon extension // inferred from sequence or structural similarity /// 0030517 // negative regulation of axon extension // inferred from electronic annotation /// 0033603 // positive regulation of dopamine secretion // inferred from mutant phenotype /// 0045665 // negative regulation of neuron differentiation // inferred from direct assay /// 0045687 // positive regulation of glial cell differentiation // inferred from direct assay /// 0048679 // regulation of axon regeneration // inferred from direct assay /// 0048709 // oligodendrocyte differentiation // inferred from expression pattern /// 0050770 // regulation of axonogenesis // not recorded /// 0050771 // negative regulation of axonogenesis // inferred from direct assay /// 0050771 // negative regulation of axonogenesis // inferred from mutant phenotype /// 0050771 // negative regulation of axonogenesis // not recorded /// 0051930 // regulation of sensory perception of pain // inferred from direct assay /// 0060317 // cardiac epithelial to mesenchymal transition // not recorded /// 0070571 // negative regulation of neuron projection regeneration // inferred from mutant phenotype 0005635 // nuclear envelope // not recorded /// 0005635 // nuclear envelope // inferred from sequence or structural similarity /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // inferred from direct assay /// 0030176 // integral to endoplasmic reticulum membrane // not recorded /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation /// 0042995 // cell projection // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043025 // neuronal cell body // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043209 // myelin sheath // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay 1368889_at NM_023101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023101.1 /DB_XREF=gi:12831220 /GEN=Vti1-pending /FEA=FLmRNA /CNT=15 /TID=Rn.47789.1 /TIER=FL /STK=2 /UG=Rn.47789 /LL=65277 /DEF=Rattus norvegicus SNARE Vti1a-beta protein (Vti1-pending), mRNA. /PROD=SNARE Vti1a-beta protein /FL=gb:NM_023101.1 gb:AF262222.1 gb:AF262221.1 NM_023101 vesicle transport through interaction with t-SNAREs homolog 1A (yeast) Vti1a 65277 NM_023101 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // not recorded /// 0042147 // retrograde transport, endosome to Golgi // inferred from sequence or structural similarity 0008021 // synaptic vesicle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from direct assay /// 0030665 // clathrin coated vesicle membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031201 // SNARE complex // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation 0005484 // SNAP receptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1368890_at NM_053410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053410.1 /DB_XREF=gi:16758145 /GEN=Gnpat /FEA=FLmRNA /CNT=14 /TID=Rn.1739.1 /TIER=FL /STK=2 /UG=Rn.1739 /LL=84470 /DEF=Rattus norvegicus acyl-CoA:dihydroxyacetonephosphate acyltransferase (Gnpat), mRNA. /PROD=acyl-CoA:dihydroxyacetonephosphateacyltransferase /FL=gb:NM_053410.1 gb:AF218826.1 NM_053410 glyceronephosphate O-acyltransferase Gnpat 84470 NM_053410 0007416 // synapse assembly // inferred from electronic annotation /// 0007416 // synapse assembly // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008611 // ether lipid biosynthetic process // inferred from electronic annotation /// 0008611 // ether lipid biosynthetic process // not recorded /// 0016044 // cellular membrane organization // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0021587 // cerebellum morphogenesis // inferred from electronic annotation /// 0021587 // cerebellum morphogenesis // not recorded /// 0030913 // paranodal junction assembly // inferred from electronic annotation /// 0030913 // paranodal junction assembly // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042552 // myelination // inferred from electronic annotation /// 0042552 // myelination // not recorded /// 0042594 // response to starvation // inferred from expression pattern /// 0070542 // response to fatty acid // inferred from expression pattern 0005739 // mitochondrion // inferred from direct assay /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // traceable author statement /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003824 // catalytic activity // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016287 // glycerone-phosphate O-acyltransferase activity // not recorded /// 0016287 // glycerone-phosphate O-acyltransferase activity // traceable author statement /// 0016287 // glycerone-phosphate O-acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368891_at AI014001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI014001 /DB_XREF=gi:3226937 /DB_XREF=EST207556 /CLONE=RSPBD14 /FEA=FLmRNA /CNT=14 /TID=Rn.1739.1 /TIER=ConsEnd /STK=1 /UG=Rn.1739 /LL=84470 /UG_GENE=Gnpat /UG_TITLE=acyl-CoA:dihydroxyacetonephosphate acyltransferase /FL=gb:NM_053410.1 gb:AF218826.1 AI014001 glyceronephosphate O-acyltransferase Gnpat 84470 NM_053410 0007416 // synapse assembly // inferred from electronic annotation /// 0007416 // synapse assembly // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008611 // ether lipid biosynthetic process // inferred from electronic annotation /// 0008611 // ether lipid biosynthetic process // not recorded /// 0016044 // cellular membrane organization // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0021587 // cerebellum morphogenesis // inferred from electronic annotation /// 0021587 // cerebellum morphogenesis // not recorded /// 0030913 // paranodal junction assembly // inferred from electronic annotation /// 0030913 // paranodal junction assembly // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042552 // myelination // inferred from electronic annotation /// 0042552 // myelination // not recorded /// 0042594 // response to starvation // inferred from expression pattern /// 0070542 // response to fatty acid // inferred from expression pattern 0005739 // mitochondrion // inferred from direct assay /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // traceable author statement /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003824 // catalytic activity // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016287 // glycerone-phosphate O-acyltransferase activity // not recorded /// 0016287 // glycerone-phosphate O-acyltransferase activity // traceable author statement /// 0016287 // glycerone-phosphate O-acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368892_at NM_016989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_016989.1 /DB_XREF=gi:8392854 /GEN=Adcyap1 /FEA=FLmRNA /CNT=14 /TID=Rn.37400.1 /TIER=FL /STK=2 /UG=Rn.37400 /LL=24166 /DEF=Rattus norvegicus adenylate cyclase activating polypeptide 1 (Adcyap1), mRNA. /PROD=adenylate cyclase activating polypeptide 1 /FL=gb:NM_016989.1 gb:M63006.1 NM_016989 0001541 // ovarian follicle development // inferred from direct assay /// 0001662 // behavioral fear response // inferred from direct assay /// 0001821 // histamine secretion // inferred from direct assay /// 0002865 // negative regulation of acute inflammatory response to antigenic stimulus // inferred from direct assay /// 0002878 // negative regulation of acute inflammatory response to non-antigenic stimulus // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007218 // neuropeptide signaling pathway // non-traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0010976 // positive regulation of neuron projection development // inferred from direct assay /// 0019233 // sensory perception of pain // inferred from direct assay /// 0021983 // pituitary gland development // inferred from expression pattern /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from direct assay /// 0032755 // positive regulation of interleukin-6 production // inferred from direct assay /// 0034259 // negative regulation of Rho GTPase activity // inferred from direct assay /// 0042594 // response to starvation // inferred from expression pattern /// 0043267 // negative regulation of potassium ion transport // inferred from direct assay /// 0045471 // response to ethanol // inferred from expression pattern /// 0045768 // positive regulation of anti-apoptosis // inferred from direct assay /// 0045909 // positive regulation of vasodilation // inferred from direct assay /// 0046034 // ATP metabolic process // inferred from direct assay /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from direct assay /// 0060078 // regulation of postsynaptic membrane potential // inferred from direct assay /// 0060124 // positive regulation of growth hormone secretion // inferred from direct assay /// 0060253 // negative regulation of glial cell proliferation // inferred from direct assay /// 0070445 // regulation of oligodendrocyte progenitor proliferation // inferred from direct assay /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern /// 0090274 // positive regulation of somatostatin secretion // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay 0005179 // hormone activity // inferred from electronic annotation /// 0031858 // pituitary adenylate cyclase-activating polypeptide receptor binding // inferred from direct assay 1368893_at NM_053874 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053874.1 /DB_XREF=gi:16758741 /GEN=Cap2 /FEA=FLmRNA /CNT=14 /TID=Rn.10229.1 /TIER=FL /STK=2 /UG=Rn.10229 /LL=116653 /DEF=Rattus norvegicus adenylyl cyclase-associated protein 2 (Cap2), mRNA. /PROD=adenylyl cyclase-associated protein 2 /FL=gb:NM_053874.1 gb:U31935.1 NM_053874 CAP, adenylate cyclase-associated protein, 2 (yeast) Cap2 116653 NM_053874 0000902 // cell morphogenesis // inferred from electronic annotation /// 0007010 // cytoskeleton organization // traceable author statement /// 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1368894_at AW919109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919109 /DB_XREF=gi:8084899 /DB_XREF=EST350413 /CLONE=RGIFC89 /FEA=FLmRNA /CNT=14 /TID=Rn.10229.1 /TIER=ConsEnd /STK=0 /UG=Rn.10229 /LL=116653 /UG_GENE=Cap2 /UG_TITLE=adenylyl cyclase-associated protein 2 /FL=gb:NM_053874.1 gb:U31935.1 AW919109 CAP, adenylate cyclase-associated protein, 2 (yeast) Cap2 116653 NM_053874 0000902 // cell morphogenesis // inferred from electronic annotation /// 0007010 // cytoskeleton organization // traceable author statement /// 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1368895_at NM_053992 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053992.1 /DB_XREF=gi:16758897 /GEN=Nlgn2 /FEA=FLmRNA /CNT=12 /TID=Rn.55111.1 /TIER=FL /STK=2 /UG=Rn.55111 /LL=117096 /DEF=Rattus norvegicus neuroligin 2 (Nlgn2), mRNA. /PROD=neuroligin 2 /FL=gb:U41662.1 gb:NM_053992.1 NM_053992 neuroligin 2 Nlgn2 117096 NM_053992 0002087 // regulation of respiratory gaseous exchange by neurological system process // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0050804 // regulation of synaptic transmission // not recorded /// 0050808 // synapse organization // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045202 // synapse // not recorded 1368896_at NM_030858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030858.1 /DB_XREF=gi:13540678 /GEN=Madh7 /FEA=FLmRNA /CNT=11 /TID=Rn.29980.1 /TIER=FL /STK=2 /UG=Rn.29980 /LL=81516 /DEF=Rattus norvegicus MAD (mothers against decapentaplegic, Drosophila) homolog 7 (Madh7), mRNA. /PROD=MAD (mothers against decapentaplegic,Drosophila) homolog 7 /FL=gb:NM_030858.1 gb:AF042499.1 gb:AF159626.1 NM_030858 SMAD family member 7 Smad7 81516 NM_030858 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010801 // negative regulation of peptidyl-threonine phosphorylation // inferred from electronic annotation /// 0010801 // negative regulation of peptidyl-threonine phosphorylation // not recorded /// 0010944 // negative regulation of transcription by competitive promoter binding // inferred from electronic annotation /// 0010944 // negative regulation of transcription by competitive promoter binding // not recorded /// 0016481 // negative regulation of transcription // inferred from expression pattern /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0022409 // positive regulation of cell-cell adhesion // inferred from electronic annotation /// 0022409 // positive regulation of cell-cell adhesion // not recorded /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0030509 // BMP signaling pathway // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0031397 // negative regulation of protein ubiquitination // not recorded /// 0031397 // negative regulation of protein ubiquitination // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0032925 // regulation of activin receptor signaling pathway // inferred from electronic annotation /// 0032925 // regulation of activin receptor signaling pathway // not recorded /// 0033137 // negative regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033137 // negative regulation of peptidyl-serine phosphorylation // not recorded /// 0034333 // adherens junction assembly // inferred from electronic annotation /// 0034333 // adherens junction assembly // not recorded /// 0034616 // response to laminar fluid shear stress // inferred from electronic annotation /// 0034616 // response to laminar fluid shear stress // not recorded /// 0034629 // cellular protein complex localization // inferred from electronic annotation /// 0034629 // cellular protein complex localization // not recorded /// 0043433 // negative regulation of transcription factor activity // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048844 // artery morphogenesis // inferred from electronic annotation /// 0048844 // artery morphogenesis // not recorded /// 0050821 // protein stabilization // inferred from electronic annotation /// 0050821 // protein stabilization // not recorded /// 0051444 // negative regulation of ubiquitin-protein ligase activity // inferred from electronic annotation /// 0051444 // negative regulation of ubiquitin-protein ligase activity // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0055117 // regulation of cardiac muscle contraction // inferred from electronic annotation /// 0055117 // regulation of cardiac muscle contraction // not recorded /// 0060389 // pathway-restricted SMAD protein phosphorylation // not recorded /// 0060389 // pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0060394 // negative regulation of pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0060394 // negative regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0060412 // ventricular septum morphogenesis // inferred from electronic annotation /// 0060412 // ventricular septum morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // not recorded /// 0016342 // catenin complex // inferred from electronic annotation /// 0016342 // catenin complex // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005518 // collagen binding // inferred from electronic annotation /// 0005518 // collagen binding // not recorded /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0030617 // transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity // inferred from electronic annotation /// 0030617 // transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0034713 // type I transforming growth factor beta receptor binding // inferred from electronic annotation /// 0034713 // type I transforming growth factor beta receptor binding // not recorded /// 0048185 // activin binding // inferred from electronic annotation /// 0048185 // activin binding // not recorded /// 0070411 // I-SMAD binding // inferred from electronic annotation /// 0070411 // I-SMAD binding // not recorded 1368897_at AF042499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF042499.1 /DB_XREF=gi:3282768 /FEA=FLmRNA /CNT=11 /TID=Rn.29980.1 /TIER=FL /STK=1 /UG=Rn.29980 /LL=81516 /UG_GENE=Madh7 /DEF=Rattus norvegicus Smad7 mRNA, complete cds. /PROD=Smad7 /FL=gb:NM_030858.1 gb:AF042499.1 gb:AF159626.1 AF042499 SMAD family member 7 Smad7 81516 NM_030858 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010801 // negative regulation of peptidyl-threonine phosphorylation // inferred from electronic annotation /// 0010801 // negative regulation of peptidyl-threonine phosphorylation // not recorded /// 0010944 // negative regulation of transcription by competitive promoter binding // inferred from electronic annotation /// 0010944 // negative regulation of transcription by competitive promoter binding // not recorded /// 0016481 // negative regulation of transcription // inferred from expression pattern /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0022409 // positive regulation of cell-cell adhesion // inferred from electronic annotation /// 0022409 // positive regulation of cell-cell adhesion // not recorded /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0030509 // BMP signaling pathway // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0031397 // negative regulation of protein ubiquitination // not recorded /// 0031397 // negative regulation of protein ubiquitination // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0032925 // regulation of activin receptor signaling pathway // inferred from electronic annotation /// 0032925 // regulation of activin receptor signaling pathway // not recorded /// 0033137 // negative regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033137 // negative regulation of peptidyl-serine phosphorylation // not recorded /// 0034333 // adherens junction assembly // inferred from electronic annotation /// 0034333 // adherens junction assembly // not recorded /// 0034616 // response to laminar fluid shear stress // inferred from electronic annotation /// 0034616 // response to laminar fluid shear stress // not recorded /// 0034629 // cellular protein complex localization // inferred from electronic annotation /// 0034629 // cellular protein complex localization // not recorded /// 0043433 // negative regulation of transcription factor activity // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048844 // artery morphogenesis // inferred from electronic annotation /// 0048844 // artery morphogenesis // not recorded /// 0050821 // protein stabilization // inferred from electronic annotation /// 0050821 // protein stabilization // not recorded /// 0051444 // negative regulation of ubiquitin-protein ligase activity // inferred from electronic annotation /// 0051444 // negative regulation of ubiquitin-protein ligase activity // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0055117 // regulation of cardiac muscle contraction // inferred from electronic annotation /// 0055117 // regulation of cardiac muscle contraction // not recorded /// 0060389 // pathway-restricted SMAD protein phosphorylation // not recorded /// 0060389 // pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0060394 // negative regulation of pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0060394 // negative regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0060412 // ventricular septum morphogenesis // inferred from electronic annotation /// 0060412 // ventricular septum morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // not recorded /// 0016342 // catenin complex // inferred from electronic annotation /// 0016342 // catenin complex // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005518 // collagen binding // inferred from electronic annotation /// 0005518 // collagen binding // not recorded /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0030617 // transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity // inferred from electronic annotation /// 0030617 // transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0034713 // type I transforming growth factor beta receptor binding // inferred from electronic annotation /// 0034713 // type I transforming growth factor beta receptor binding // not recorded /// 0048185 // activin binding // inferred from electronic annotation /// 0048185 // activin binding // not recorded /// 0070411 // I-SMAD binding // inferred from electronic annotation /// 0070411 // I-SMAD binding // not recorded 1368898_at AW521447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521447 /DB_XREF=gi:7163826 /DB_XREF=UI-R-BJ0p-afe-f-06-0-UI.s1 /CLONE=UI-R-BJ0p-afe-f-06-0-UI /FEA=FLmRNA /CNT=11 /TID=Rn.29980.1 /TIER=Stack /STK=6 /UG=Rn.29980 /LL=81516 /UG_GENE=Madh7 /UG_TITLE=MAD (mothers against decapentaplegic, Drosophila) homolog 7 /FL=gb:NM_030858.1 gb:AF042499.1 gb:AF159626.1 AW521447 SMAD family member 7 Smad7 81516 NM_030858 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010801 // negative regulation of peptidyl-threonine phosphorylation // inferred from electronic annotation /// 0010801 // negative regulation of peptidyl-threonine phosphorylation // not recorded /// 0010944 // negative regulation of transcription by competitive promoter binding // inferred from electronic annotation /// 0010944 // negative regulation of transcription by competitive promoter binding // not recorded /// 0016481 // negative regulation of transcription // inferred from expression pattern /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0022409 // positive regulation of cell-cell adhesion // inferred from electronic annotation /// 0022409 // positive regulation of cell-cell adhesion // not recorded /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0030509 // BMP signaling pathway // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0031397 // negative regulation of protein ubiquitination // not recorded /// 0031397 // negative regulation of protein ubiquitination // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0032925 // regulation of activin receptor signaling pathway // inferred from electronic annotation /// 0032925 // regulation of activin receptor signaling pathway // not recorded /// 0033137 // negative regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033137 // negative regulation of peptidyl-serine phosphorylation // not recorded /// 0034333 // adherens junction assembly // inferred from electronic annotation /// 0034333 // adherens junction assembly // not recorded /// 0034616 // response to laminar fluid shear stress // inferred from electronic annotation /// 0034616 // response to laminar fluid shear stress // not recorded /// 0034629 // cellular protein complex localization // inferred from electronic annotation /// 0034629 // cellular protein complex localization // not recorded /// 0043433 // negative regulation of transcription factor activity // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048844 // artery morphogenesis // inferred from electronic annotation /// 0048844 // artery morphogenesis // not recorded /// 0050821 // protein stabilization // inferred from electronic annotation /// 0050821 // protein stabilization // not recorded /// 0051444 // negative regulation of ubiquitin-protein ligase activity // inferred from electronic annotation /// 0051444 // negative regulation of ubiquitin-protein ligase activity // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0055117 // regulation of cardiac muscle contraction // inferred from electronic annotation /// 0055117 // regulation of cardiac muscle contraction // not recorded /// 0060389 // pathway-restricted SMAD protein phosphorylation // not recorded /// 0060389 // pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0060394 // negative regulation of pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0060394 // negative regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0060412 // ventricular septum morphogenesis // inferred from electronic annotation /// 0060412 // ventricular septum morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // not recorded /// 0016342 // catenin complex // inferred from electronic annotation /// 0016342 // catenin complex // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005518 // collagen binding // inferred from electronic annotation /// 0005518 // collagen binding // not recorded /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0030617 // transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity // inferred from electronic annotation /// 0030617 // transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0034713 // type I transforming growth factor beta receptor binding // inferred from electronic annotation /// 0034713 // type I transforming growth factor beta receptor binding // not recorded /// 0048185 // activin binding // inferred from electronic annotation /// 0048185 // activin binding // not recorded /// 0070411 // I-SMAD binding // inferred from electronic annotation /// 0070411 // I-SMAD binding // not recorded 1368899_at NM_030849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030849.1 /DB_XREF=gi:13540660 /GEN=Bmpr1a /FEA=FLmRNA /CNT=11 /TID=Rn.11035.1 /TIER=FL /STK=2 /UG=Rn.11035 /LL=81507 /DEF=Rattus norvegicus bone morphogenetic protein type IA receptor (Bmpr1a), mRNA. /PROD=bone morphogenetic protein type IA receptor /FL=gb:NM_030849.1 gb:D38082.1 gb:D17667.1 NM_030849 bone morphogenetic protein receptor, type IA Bmpr1a 81507 NM_030849 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0001707 // mesoderm formation // not recorded /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001756 // somitogenesis // not recorded /// 0001880 // Mullerian duct regression // inferred from electronic annotation /// 0001880 // Mullerian duct regression // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003272 // endocardial cushion formation // inferred from electronic annotation /// 0003272 // endocardial cushion formation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0006955 // immune response // not recorded /// 0007389 // pattern specification process // not recorded /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007398 // ectoderm development // inferred from electronic annotation /// 0007398 // ectoderm development // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007492 // endoderm development // not recorded /// 0007492 // endoderm development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0009950 // dorsal/ventral axis specification // inferred from electronic annotation /// 0009950 // dorsal/ventral axis specification // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0019827 // stem cell maintenance // not recorded /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0021983 // pituitary gland development // not recorded /// 0021998 // neural plate mediolateral regionalization // inferred from electronic annotation /// 0021998 // neural plate mediolateral regionalization // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030501 // positive regulation of bone mineralization // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // not recorded /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030509 // BMP signaling pathway // not recorded /// 0035137 // hindlimb morphogenesis // inferred from electronic annotation /// 0035137 // hindlimb morphogenesis // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0048339 // paraxial mesoderm development // inferred from electronic annotation /// 0048339 // paraxial mesoderm development // not recorded /// 0048352 // paraxial mesoderm structural organization // inferred from electronic annotation /// 0048352 // paraxial mesoderm structural organization // not recorded /// 0048368 // lateral mesoderm development // inferred from electronic annotation /// 0048368 // lateral mesoderm development // not recorded /// 0048378 // regulation of lateral mesodermal cell fate specification // inferred from electronic annotation /// 0048378 // regulation of lateral mesodermal cell fate specification // not recorded /// 0048382 // mesendoderm development // inferred from electronic annotation /// 0048382 // mesendoderm development // not recorded /// 0048568 // embryonic organ development // inferred from electronic annotation /// 0048568 // embryonic organ development // not recorded /// 0048589 // developmental growth // inferred from electronic annotation /// 0048589 // developmental growth // not recorded /// 0048598 // embryonic morphogenesis // not recorded /// 0048598 // embryonic morphogenesis // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0050768 // negative regulation of neurogenesis // inferred from electronic annotation /// 0050768 // negative regulation of neurogenesis // not recorded /// 0051216 // cartilage development // inferred from electronic annotation /// 0051216 // cartilage development // not recorded /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded /// 0060391 // positive regulation of SMAD protein nuclear translocation // inferred from electronic annotation /// 0060391 // positive regulation of SMAD protein nuclear translocation // not recorded /// 0060896 // neural plate pattern specification // inferred from electronic annotation /// 0060896 // neural plate pattern specification // not recorded /// 0060914 // heart formation // inferred from electronic annotation /// 0060914 // heart formation // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005901 // caveola // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046332 // SMAD binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1368900_at NM_031771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031771.1 /DB_XREF=gi:13929083 /GEN=Thbd /FEA=FLmRNA /CNT=11 /TID=Rn.15127.1 /TIER=FL /STK=2 /UG=Rn.15127 /LL=83580 /DEF=Rattus norvegicus thrombomodulin (Thbd), mRNA. /PROD=thrombomodulin /FL=gb:NM_031771.1 gb:AF022743.1 NM_031771 thrombomodulin Thbd 83580 NM_031771 0007565 // female pregnancy // not recorded /// 0007565 // female pregnancy // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from direct assay /// 0007596 // blood coagulation // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0010165 // response to X-ray // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1368901_at BG666306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666306 /DB_XREF=gi:13888228 /DB_XREF=DRABUD03 /CLONE=DRABUD03 /FEA=FLmRNA /CNT=11 /TID=Rn.15127.1 /TIER=ConsEnd /STK=0 /UG=Rn.15127 /LL=83580 /UG_GENE=Thbd /UG_TITLE=thrombomodulin /FL=gb:NM_031771.1 gb:AF022743.1 BG666306 thrombomodulin Thbd 83580 NM_031771 0007565 // female pregnancy // not recorded /// 0007565 // female pregnancy // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from direct assay /// 0007596 // blood coagulation // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0010165 // response to X-ray // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1368902_at NM_019210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019210.1 /DB_XREF=gi:9506946 /GEN=Pak3 /FEA=FLmRNA /CNT=11 /TID=Rn.10128.1 /TIER=FL /STK=2 /UG=Rn.10128 /LL=29433 /DEF=Rattus norvegicus p21 (CDKN1A)-activated kinase 3 (Pak3), mRNA. /PROD=p21 (CDKN1A)-activated kinase 3 /FL=gb:NM_019210.1 gb:U33314.1 NM_019210 p21 protein (Cdc42/Rac)-activated kinase 3 Pak3 29433 NM_019210 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // traceable author statement /// 0007243 // intracellular protein kinase cascade // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017048 // Rho GTPase binding // not recorded /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368903_at NM_053416 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053416.1 /DB_XREF=gi:16758153 /GEN=Spnr /FEA=FLmRNA /CNT=10 /TID=Rn.8562.1 /TIER=FL /STK=2 /UG=Rn.8562 /LL=84476 /DEF=Rattus norvegicus double-stranded RNA-binding protein p74 (Spnr), mRNA. /PROD=double-stranded RNA-binding protein p74 /FL=gb:NM_053416.1 gb:AF226864.1 NM_053416 spermatid perinuclear RNA binding protein Strbp 84476 NM_053416 0006928 // cellular component movement // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007286 // spermatid development // not recorded /// 0007638 // mechanosensory behavior // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // not recorded /// 0003727 // single-stranded RNA binding // not recorded 1368904_at NM_031673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031673.1 /DB_XREF=gi:13928931 /GEN=Capn10 /FEA=FLmRNA /CNT=10 /TID=Rn.8875.1 /TIER=FL /STK=2 /UG=Rn.8875 /LL=63834 /DEF=Rattus norvegicus calpain 10 (Capn10), mRNA. /PROD=calpain 10 /FL=gb:NM_031673.1 gb:AF227909.3 NM_031673 calpain 10 Capn10 63834 NM_031673 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // non-traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0007568 // aging // inferred from direct assay /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0031532 // actin cytoskeleton reorganization // inferred from mutant phenotype /// 0031532 // actin cytoskeleton reorganization // not recorded /// 0031667 // response to nutrient levels // inferred from direct assay /// 0032024 // positive regulation of insulin secretion // not recorded /// 0032388 // positive regulation of intracellular transport // not recorded /// 0032869 // cellular response to insulin stimulus // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0046326 // positive regulation of glucose import // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005623 // cell // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005758 // mitochondrial intermembrane space // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005856 // cytoskeleton // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay 0000149 // SNARE binding // inferred from direct assay /// 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // inferred from direct assay /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // not recorded /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // non-traceable author statement /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1368905_at NM_133586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133586.1 /DB_XREF=gi:19424283 /GEN=Ces2 /FEA=FLmRNA /CNT=10 /TID=Rn.14535.1 /TIER=FL /STK=2 /UG=Rn.14535 /LL=171118 /DEF=Rattus norvegicus carboxylesterase 2 (intestine, liver) (Ces2), mRNA. /PROD=carboxylesterase 2 (intestine, liver) /FL=gb:NM_133586.1 gb:AB010635.1 gb:AB010632.1 NM_133586 carboxylesterase 2-like Ces2l 171118 NM_133586 0001101 // response to acid // not recorded /// 0051789 // response to protein stimulus // not recorded 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1368906_at NM_053291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053291.1 /DB_XREF=gi:16757985 /GEN=Pgk1 /FEA=FLmRNA /CNT=10 /TID=Rn.10989.1 /TIER=FL /STK=2 /UG=Rn.10989 /LL=24644 /DEF=Rattus norvegicus phosphoglycerate kinase 1 (Pgk1), mRNA. /PROD=phosphoglycerate kinase 1 /FL=gb:NM_053291.1 gb:M31788.1 NM_053291 phosphoglycerate kinase 1 Pgk1 24644 NM_053291 0005975 // carbohydrate metabolic process // inferred from direct assay /// 0006094 // gluconeogenesis // inferred from direct assay /// 0006094 // gluconeogenesis // inferred from mutant phenotype /// 0006096 // glycolysis // inferred from direct assay /// 0006096 // glycolysis // inferred from mutant phenotype /// 0006096 // glycolysis // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0016310 // phosphorylation // inferred from sequence or structural similarity 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004618 // phosphoglycerate kinase activity // inferred from direct assay /// 0004618 // phosphoglycerate kinase activity // inferred from mutant phenotype /// 0004618 // phosphoglycerate kinase activity // not recorded /// 0004618 // phosphoglycerate kinase activity // inferred from sequence or structural similarity /// 0004618 // phosphoglycerate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0043531 // ADP binding // inferred from direct assay 1368907_at NM_031726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031726.1 /DB_XREF=gi:13929019 /GEN=Scamp5 /FEA=FLmRNA /CNT=10 /TID=Rn.24420.1 /TIER=FL /STK=2 /UG=Rn.24420 /LL=65171 /DEF=Rattus norvegicus secretory carrier membrane protein 5 (Scamp5), mRNA. /PROD=secretory carrier membrane protein 5 /FL=gb:NM_031726.1 gb:AF240784.1 NM_031726 secretory carrier membrane protein 5 Scamp5 65171 NM_031726 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0034976 // response to endoplasmic reticulum stress // not recorded /// 0045806 // negative regulation of endocytosis // not recorded /// 0045956 // positive regulation of calcium ion-dependent exocytosis // not recorded /// 0045956 // positive regulation of calcium ion-dependent exocytosis // inferred from sequence or structural similarity /// 0050715 // positive regulation of cytokine secretion // not recorded /// 0050715 // positive regulation of cytokine secretion // inferred from sequence or structural similarity 0000139 // Golgi membrane // not recorded /// 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031201 // SNARE complex // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032588 // trans-Golgi network membrane // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0055038 // recycling endosome membrane // inferred from electronic annotation /// 0055038 // recycling endosome membrane // not recorded 0005515 // protein binding // not recorded 1368908_at NM_024155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024155.1 /DB_XREF=gi:13162350 /GEN=Anxa4 /FEA=FLmRNA /CNT=10 /TID=Rn.19270.1 /TIER=FL /STK=2 /UG=Rn.19270 /LL=79124 /DEF=Rattus norvegicus ZAP 36annexin IV (Anxa4), mRNA. /PROD=ZAP 36annexin IV /FL=gb:D38224.1 gb:NM_024155.1 NM_024155 annexin A4 Anxa4 79124 NM_024155 0006887 // exocytosis // non-traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // not recorded 1368909_a_at NM_053807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053807.1 /DB_XREF=gi:16758651 /GEN=Grasp1 /FEA=FLmRNA /CNT=9 /TID=Rn.53868.1 /TIER=FL /STK=2 /UG=Rn.53868 /LL=116493 /DEF=Rattus norvegicus GRIP-associated protein 1 (Grasp1), mRNA. /PROD=GRIP-associated protein 1 /FL=gb:AF274057.1 gb:NM_053807.1 NM_053807 GRIP1 associated protein 1 Gripap1 116493 NM_053807 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation 1368910_at NM_019372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019372.1 /DB_XREF=gi:9506962 /GEN=PDP1 /FEA=FLmRNA /CNT=9 /TID=Rn.31799.1 /TIER=FL /STK=2 /UG=Rn.31799 /LL=54705 /DEF=Rattus norvegicus pyruvate dehydrogenase phosphatase isoenzyme 1 (PDP1), mRNA. /PROD=pyruvate dehydrogenase phosphatase isoenzyme 1 /FL=gb:NM_019372.1 gb:AF062740.1 NM_019372 pyruvate dehyrogenase phosphatase catalytic subunit 1 Pdp1 54705 NM_019372 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0010510 // regulation of acetyl-CoA biosynthetic process from pyruvate // not recorded /// 0043085 // positive regulation of catalytic activity // inferred by curator 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // traceable author statement /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation 0000287 // magnesium ion binding // inferred by curator /// 0000287 // magnesium ion binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from mutant phenotype /// 0004724 // magnesium-dependent protein serine/threonine phosphatase activity // inferred from direct assay /// 0004741 // [pyruvate dehydrogenase (lipoamide)] phosphatase activity // inferred from direct assay /// 0004741 // [pyruvate dehydrogenase (lipoamide)] phosphatase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from mutant phenotype /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation 1368911_at AB043636 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB043636.1 /DB_XREF=gi:8096666 /GEN=kir6.1 /FEA=FLmRNA /CNT=9 /TID=Rn.29238.1 /TIER=FL /STK=2 /UG=Rn.29238 /LL=25472 /DEF=Rattus norvegicus mRNA for ATP-sensitive K+ channel subunit Kir6.1, complete cds, isolate:A4. /PROD=ATP-sensitive K+ channel subunit Kir6.1 /FL=gb:AB043637.1 gb:AB043636.1 gb:D42145.1 gb:NM_017099.1 AB043636 potassium inwardly-rectifying channel, subfamily J, member 8 Kcnj8 25472 NM_017099 0001822 // kidney development // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from direct assay /// 0006813 // potassium ion transport // inferred from mutant phenotype /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0009268 // response to pH // inferred from direct assay /// 0010107 // potassium ion import // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0042311 // vasodilation // inferred from direct assay /// 0043330 // response to exogenous dsRNA // inferred from electronic annotation /// 0043330 // response to exogenous dsRNA // not recorded /// 0051607 // defense response to virus // inferred from electronic annotation /// 0051607 // defense response to virus // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0008282 // ATP-sensitive potassium channel complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030016 // myofibril // inferred from electronic annotation /// 0030016 // myofibril // not recorded /// 0042383 // sarcolemma // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0015272 // ATP-activated inward rectifier potassium channel activity // inferred from direct assay /// 0015272 // ATP-activated inward rectifier potassium channel activity // inferred from electronic annotation 1368912_at M12138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M12138.1 /DB_XREF=gi:207467 /FEA=FLmRNA /CNT=9 /TID=Rn.22.1 /TIER=FL /STK=2 /UG=Rn.22 /LL=25569 /UG_GENE=Trh /UG_TITLE=Thyrotropin releasing hormone /DEF=Rat thyrotropin-releasing hormone (TRH) mRNA, complete cds. /FL=gb:M12138.1 gb:NM_013046.1 M12138 thyrotropin releasing hormone Trh 25569 NM_013046 0001666 // response to hypoxia // inferred from expression pattern /// 0007628 // adult walking behavior // inferred from electronic annotation /// 0007628 // adult walking behavior // not recorded /// 0009409 // response to cold // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0009755 // hormone-mediated signaling pathway // inferred from electronic annotation /// 0014050 // negative regulation of glutamate secretion // inferred from direct assay /// 0014054 // positive regulation of gamma-aminobutyric acid secretion // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0032024 // positive regulation of insulin secretion // inferred from direct assay /// 0042755 // eating behavior // inferred from direct assay /// 0045471 // response to ethanol // inferred from expression pattern /// 0051412 // response to corticosterone stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay 0005179 // hormone activity // inferred from electronic annotation /// 0005184 // neuropeptide hormone activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008437 // thyrotropin-releasing hormone activity // inferred from direct assay 1368913_at NM_017120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017120.1 /DB_XREF=gi:8393201 /GEN=Csnb /FEA=FLmRNA /CNT=9 /TID=Rn.10745.1 /TIER=FL /STK=2 /UG=Rn.10745 /LL=29173 /DEF=Rattus norvegicus casein beta (Csnb), mRNA. /PROD=casein beta /FL=gb:NM_017120.1 NM_017120 casein beta Csn2 29173 NM_017120 0006810 // transport // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1368914_at NM_017325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017325.1 /DB_XREF=gi:8392899 /GEN=Runx1 /FEA=FLmRNA /CNT=8 /TID=Rn.11201.1 /TIER=FL /STK=2 /UG=Rn.11201 /LL=50662 /DEF=Rattus norvegicus runt related transcription factor 1 (Runx1), mRNA. /PROD=acute myeloid leukemia 1 /FL=gb:NM_017325.1 gb:L35271.1 NM_017325 runt-related transcription factor 1 Runx1 50662 NM_017325 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0030099 // myeloid cell differentiation // not recorded /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030853 // negative regulation of granulocyte differentiation // not recorded /// 0030854 // positive regulation of granulocyte differentiation // not recorded /// 0030854 // positive regulation of granulocyte differentiation // inferred from sequence or structural similarity /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032526 // response to retinoic acid // not recorded /// 0035162 // embryonic hemopoiesis // inferred from electronic annotation /// 0035162 // embryonic hemopoiesis // not recorded /// 0045449 // regulation of transcription // traceable author statement /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0045766 // positive regulation of angiogenesis // inferred from sequence or structural similarity /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048266 // behavioral response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // not recorded /// 0048666 // neuron development // inferred from electronic annotation /// 0048666 // neuron development // not recorded /// 0060216 // definitive hemopoiesis // inferred from electronic annotation /// 0060216 // definitive hemopoiesis // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1368915_at NM_021593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021593.1 /DB_XREF=gi:11024671 /GEN=Kmo /FEA=FLmRNA /CNT=8 /TID=Rn.35029.1 /TIER=FL /STK=2 /UG=Rn.35029 /LL=59113 /DEF=Rattus norvegicus kynurenine 3-hydroxylase (Kmo), mRNA. /PROD=kynurenine 3-hydroxylase /FL=gb:AF056031.1 gb:NM_021593.1 NM_021593 kynurenine 3-monooxygenase (kynurenine 3-hydroxylase) Kmo 59113 NM_021593 0008152 // metabolic process // inferred from electronic annotation /// 0009651 // response to salt stress // inferred from electronic annotation /// 0009651 // response to salt stress // not recorded /// 0019363 // pyridine nucleotide biosynthetic process // inferred from electronic annotation /// 0019441 // tryptophan catabolic process to kynurenine // inferred from direct assay /// 0019674 // NAD metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0070189 // kynurenine metabolic process // inferred from electronic annotation /// 0070189 // kynurenine metabolic process // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004502 // kynurenine 3-monooxygenase activity // inferred from direct assay /// 0004502 // kynurenine 3-monooxygenase activity // not recorded /// 0004502 // kynurenine 3-monooxygenase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0009055 // electron carrier activity // not recorded /// 0016174 // NAD(P)H oxidase activity // inferred from electronic annotation /// 0016174 // NAD(P)H oxidase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // not recorded 1368916_at NM_021577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021577.1 /DB_XREF=gi:11024647 /GEN=Asl /FEA=FLmRNA /CNT=8 /TID=Rn.64591.1 /TIER=FL /STK=2 /UG=Rn.64591 /LL=59085 /DEF=Rattus norvegicus argininosuccinate lyase (Asl), mRNA. /PROD=argininosuccinate lyase /FL=gb:NM_021577.1 gb:D28501.1 NM_021577 argininosuccinate lyase Asl 59085 NM_021577 0000050 // urea cycle // inferred from direct assay /// 0000050 // urea cycle // non-traceable author statement /// 0000050 // urea cycle // inferred from electronic annotation /// 0000053 // argininosuccinate metabolic process // inferred from direct assay /// 0001101 // response to acid // inferred from expression pattern /// 0001822 // kidney development // inferred from expression pattern /// 0001889 // liver development // inferred from direct assay /// 0001889 // liver development // inferred from expression pattern /// 0006520 // cellular amino acid metabolic process // not recorded /// 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006526 // arginine biosynthetic process // non-traceable author statement /// 0006526 // arginine biosynthetic process // inferred from electronic annotation /// 0007494 // midgut development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0010043 // response to zinc ion // inferred from expression pattern /// 0014075 // response to amine stimulus // inferred from expression pattern /// 0019676 // ammonia assimilation cycle // inferred from electronic annotation /// 0019676 // ammonia assimilation cycle // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0042450 // arginine biosynthetic process via ornithine // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0060416 // response to growth hormone stimulus // inferred from expression pattern /// 0060539 // diaphragm development // inferred from expression pattern /// 0071242 // cellular response to ammonium ion // inferred from expression pattern /// 0071320 // cellular response to cAMP // inferred from expression pattern /// 0071346 // cellular response to interferon-gamma // inferred from expression pattern /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern /// 0071377 // cellular response to glucagon stimulus // inferred from expression pattern /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from expression pattern /// 0071549 // cellular response to dexamethasone stimulus // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070852 // cell body fiber // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004056 // argininosuccinate lyase activity // inferred from direct assay /// 0004056 // argininosuccinate lyase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation 1368917_at NM_057120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057120.1 /DB_XREF=gi:16923967 /GEN=Mth1 /FEA=FLmRNA /CNT=8 /TID=Rn.10669.1 /TIER=FL /STK=2 /UG=Rn.10669 /LL=117260 /DEF=Rattus norvegicus mutT (E. coli) human homolog (8-oxo-dGTPase) (Mth1), mRNA. /PROD=mutT (E. coli) human homolog (8-oxo-dGTPase) /FL=gb:NM_057120.1 gb:D49977.1 NM_057120 nudix (nucleoside diphosphate linked moiety X)-type motif 1 Nudt1 117260 NM_057120 0006195 // purine nucleotide catabolic process // inferred from sequence or structural similarity /// 0006203 // dGTP catabolic process // inferred from electronic annotation /// 0006203 // dGTP catabolic process // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0042262 // DNA protection // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008413 // 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity // not recorded /// 0008413 // 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity // non-traceable author statement /// 0008413 // 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0035539 // 8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1368918_at NM_053595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053595.1 /DB_XREF=gi:16758377 /GEN=Pgf /FEA=FLmRNA /CNT=13 /TID=Rn.6960.1 /TIER=FL /STK=2 /UG=Rn.6960 /LL=94203 /DEF=Rattus norvegicus placental growth factor (Pgf), mRNA. /PROD=placental growth factor /FL=gb:NM_053595.1 gb:L40030.1 NM_053595 placental growth factor Pgf 94203 NM_053595 0001525 // angiogenesis // traceable author statement /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from expression pattern /// 0030154 // cell differentiation // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0060688 // regulation of morphogenesis of a branching structure // inferred from electronic annotation /// 0060688 // regulation of morphogenesis of a branching structure // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0005172 // vascular endothelial growth factor receptor binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay 1368919_at BF281271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281271 /DB_XREF=gi:11212257 /DB_XREF=EST445778 /CLONE=RGIAB16 /FEA=FLmRNA /CNT=13 /TID=Rn.6960.1 /TIER=Stack /STK=6 /UG=Rn.6960 /LL=94203 /UG_GENE=Pgf /UG_TITLE=placental growth factor /FL=gb:NM_053595.1 gb:L40030.1 BF281271 placental growth factor Pgf 94203 NM_053595 0001525 // angiogenesis // traceable author statement /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from expression pattern /// 0030154 // cell differentiation // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0060688 // regulation of morphogenesis of a branching structure // inferred from electronic annotation /// 0060688 // regulation of morphogenesis of a branching structure // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0005172 // vascular endothelial growth factor receptor binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay 1368920_at NM_031321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031321.1 /DB_XREF=gi:13786141 /GEN=Slit3 /FEA=FLmRNA /CNT=11 /TID=Rn.12298.1 /TIER=FL /STK=2 /UG=Rn.12298 /LL=83467 /DEF=Rattus norvegicus slit (Drosophila) homolog 3 (Slit3), mRNA. /PROD=slit (Drosophila) homolog 3 /FL=gb:NM_031321.1 gb:AB011531.1 NM_031321 slit homolog 3 (Drosophila) Slit3 83467 NM_031321 0001554 // luteolysis // inferred from electronic annotation /// 0001554 // luteolysis // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // not recorded /// 0021510 // spinal cord development // inferred from expression pattern /// 0021834 // chemorepulsion involved in embryonic olfactory bulb interneuron migration // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0032870 // cellular response to hormone stimulus // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // not recorded /// 0035385 // Roundabout signaling pathway // inferred from electronic annotation /// 0035385 // Roundabout signaling pathway // not recorded /// 0048846 // axon extension involved in axon guidance // inferred from electronic annotation /// 0048846 // axon extension involved in axon guidance // not recorded /// 0050919 // negative chemotaxis // inferred from electronic annotation /// 0050919 // negative chemotaxis // not recorded /// 0051414 // response to cortisol stimulus // inferred from electronic annotation /// 0051414 // response to cortisol stimulus // not recorded /// 0070100 // negative regulation of chemokine-mediated signaling pathway // inferred from electronic annotation /// 0070100 // negative regulation of chemokine-mediated signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0048495 // Roundabout binding // inferred from electronic annotation /// 0048495 // Roundabout binding // not recorded 1368921_a_at NM_012924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012924.2 /DB_XREF=gi:19923702 /GEN=Cd44 /FEA=FLmRNA /CNT=11 /TID=Rn.1120.1 /TIER=FL /STK=2 /UG=Rn.1120 /LL=25406 /DEF=Rattus norvegicus Cell surface glycoprotein CD44 (hyaluronate binding protein) (Cd44), mRNA. /PROD=cell surface glycoprotein CD44 (hyaluronatebinding protein) /FL=gb:U96138.1 gb:NM_012924.2 NM_012924 Cd44 molecule Cd44 25406 NM_012924 0001558 // regulation of cell growth // inferred from direct assay /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001955 // blood vessel maturation // inferred from expression pattern /// 0002246 // wound healing involved in inflammatory response // not recorded /// 0002246 // wound healing involved in inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from expression pattern /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from mutant phenotype /// 0007155 // cell adhesion // not recorded /// 0007155 // cell adhesion // non-traceable author statement /// 0007165 // signal transduction // not recorded /// 0010628 // positive regulation of gene expression // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016477 // cell migration // inferred from mutant phenotype /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0033031 // positive regulation of neutrophil apoptosis // inferred from mutant phenotype /// 0033138 // positive regulation of peptidyl-serine phosphorylation // not recorded /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033189 // response to vitamin A // inferred from expression pattern /// 0034238 // macrophage fusion // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043518 // negative regulation of DNA damage response, signal transduction by p53 class mediator // not recorded /// 0043518 // negative regulation of DNA damage response, signal transduction by p53 class mediator // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0060442 // branching involved in prostate gland morphogenesis // not recorded /// 0060442 // branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005057 // receptor signaling protein activity // not recorded /// 0005057 // receptor signaling protein activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // inferred from mutant phenotype /// 0005540 // hyaluronic acid binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0051219 // phosphoprotein binding // inferred from physical interaction 1368922_at NM_021776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021776.1 /DB_XREF=gi:11120733 /GEN=Dine /FEA=FLmRNA /CNT=10 /TID=Rn.45803.1 /TIER=FL /STK=2 /UG=Rn.45803 /LL=60417 /DEF=Rattus norvegicus metallopeptidase (Dine), mRNA. /PROD=metallopeptidase /FL=gb:AB026293.1 gb:AB023896.1 gb:NM_021776.1 NM_021776 endothelin converting enzyme-like 1 Ecel1 60417 NM_021776 0006508 // proteolysis // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0023034 // intracellular signaling pathway // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // not recorded /// 0004222 // metalloendopeptidase activity // traceable author statement /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368923_at AB023896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB023896.1 /DB_XREF=gi:7670284 /GEN=DINE /FEA=FLmRNA /CNT=10 /TID=Rn.45803.1 /TIER=FL /STK=1 /UG=Rn.45803 /LL=60417 /DEF=Rattus norvegicus DINE mRNA for metallopeptidase, complete cds. /PROD=metallopeptidase /FL=gb:AB026293.1 gb:AB023896.1 gb:NM_021776.1 AB023896 endothelin converting enzyme-like 1 Ecel1 60417 NM_021776 0006508 // proteolysis // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0023034 // intracellular signaling pathway // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // not recorded /// 0004222 // metalloendopeptidase activity // traceable author statement /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368924_at NM_017094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017094.1 /DB_XREF=gi:8393433 /GEN=Ghr /FEA=FLmRNA /CNT=10 /TID=Rn.2178.1 /TIER=FL /STK=2 /UG=Rn.2178 /LL=25235 /DEF=Rattus norvegicus Growth hormone receptor (Ghr), mRNA. /PROD=growth hormone receptor /FL=gb:J04811.1 gb:NM_017094.1 NM_017094 growth hormone receptor Ghr 25235 NM_017094 0000187 // activation of MAPK activity // inferred from direct assay /// 0000255 // allantoin metabolic process // inferred from electronic annotation /// 0000255 // allantoin metabolic process // not recorded /// 0006101 // citrate metabolic process // inferred from electronic annotation /// 0006101 // citrate metabolic process // not recorded /// 0006103 // 2-oxoglutarate metabolic process // inferred from electronic annotation /// 0006103 // 2-oxoglutarate metabolic process // not recorded /// 0006105 // succinate metabolic process // inferred from electronic annotation /// 0006105 // succinate metabolic process // not recorded /// 0006107 // oxaloacetate metabolic process // inferred from electronic annotation /// 0006107 // oxaloacetate metabolic process // not recorded /// 0006549 // isoleucine metabolic process // inferred from electronic annotation /// 0006549 // isoleucine metabolic process // not recorded /// 0006573 // valine metabolic process // inferred from electronic annotation /// 0006573 // valine metabolic process // not recorded /// 0006600 // creatine metabolic process // inferred from electronic annotation /// 0006600 // creatine metabolic process // not recorded /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // not recorded /// 0006897 // endocytosis // inferred from electronic annotation /// 0007259 // JAK-STAT cascade // inferred from direct assay /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0009755 // hormone-mediated signaling pathway // inferred from direct assay /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019530 // taurine metabolic process // inferred from electronic annotation /// 0019530 // taurine metabolic process // not recorded /// 0031623 // receptor internalization // inferred from electronic annotation /// 0031623 // receptor internalization // not recorded /// 0032094 // response to food // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // not recorded /// 0032870 // cellular response to hormone stimulus // inferred from electronic annotation /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0040014 // regulation of multicellular organism growth // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0042977 // activation of JAK2 kinase activity // inferred from direct assay /// 0043278 // response to morphine // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0043526 // neuroprotection // inferred from direct assay /// 0044236 // multicellular organismal metabolic process // inferred from electronic annotation /// 0044236 // multicellular organismal metabolic process // not recorded /// 0045597 // positive regulation of cell differentiation // inferred from expression pattern /// 0045597 // positive regulation of cell differentiation // traceable author statement /// 0046427 // positive regulation of JAK-STAT cascade // inferred from direct assay /// 0046427 // positive regulation of JAK-STAT cascade // inferred from mutant phenotype /// 0046449 // creatinine metabolic process // inferred from electronic annotation /// 0046449 // creatinine metabolic process // not recorded /// 0046898 // response to cycloheximide // inferred from electronic annotation /// 0046898 // response to cycloheximide // not recorded /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0048009 // insulin-like growth factor receptor signaling pathway // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0060351 // cartilage development involved in endochondral bone morphogenesis // inferred from expression pattern /// 0060396 // growth hormone receptor signaling pathway // inferred from direct assay /// 0060396 // growth hormone receptor signaling pathway // not recorded /// 0060396 // growth hormone receptor signaling pathway // inferred from electronic annotation /// 0070555 // response to interleukin-1 // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019898 // extrinsic to membrane // inferred from electronic annotation /// 0019898 // extrinsic to membrane // not recorded /// 0043025 // neuronal cell body // inferred from direct assay /// 0043235 // receptor complex // not recorded /// 0043235 // receptor complex // inferred from electronic annotation /// 0070195 // growth hormone receptor complex // inferred from electronic annotation /// 0070195 // growth hormone receptor complex // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004903 // growth hormone receptor activity // inferred from direct assay /// 0004903 // growth hormone receptor activity // not recorded /// 0004903 // growth hormone receptor activity // traceable author statement /// 0004903 // growth hormone receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred from direct assay /// 0017046 // peptide hormone binding // not recorded /// 0017046 // peptide hormone binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded /// 0019901 // protein kinase binding // inferred from direct assay /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019903 // protein phosphatase binding // inferred from mutant phenotype /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0042169 // SH2 domain binding // inferred from direct assay /// 0042169 // SH2 domain binding // inferred from mutant phenotype /// 0042169 // SH2 domain binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1368925_a_at NM_053740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053740.1 /DB_XREF=gi:16758563 /GEN=Pak3bp /FEA=FLmRNA /CNT=10 /TID=Rn.10963.1 /TIER=FL /STK=2 /UG=Rn.10963 /LL=114559 /DEF=Rattus norvegicus PAK-interacting exchange factor beta (Pak3bp), mRNA. /PROD=PAK-interacting exchange factor beta /FL=gb:AY034823.1 gb:NM_053740.1 NM_053740 Rho guanine nucleotide exchange factor (GEF7) Arhgef7 114559 NM_001113521 /// NM_001113522 /// NM_053740 0006915 // apoptosis // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from direct assay /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from sequence or structural similarity /// 0043615 // astrocyte cell migration // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005925 // focal adhesion // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // traceable author statement /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1368926_at NM_019272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019272.1 /DB_XREF=gi:9507082 /GEN=Sema4f /FEA=FLmRNA /CNT=9 /TID=Rn.42885.1 /TIER=FL /STK=2 /UG=Rn.42885 /LL=29745 /DEF=Rattus norvegicus sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain (Sema4f), mRNA. /PROD=sema domain, immunoglobulin domain (Ig), TMdomain, and short cytoplasmic domain /FL=gb:NM_019272.1 gb:AB002563.1 NM_019272 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F Sema4f 29745 NM_019272 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030517 // negative regulation of axon extension // inferred from direct assay /// 0031290 // retinal ganglion cell axon guidance // inferred from direct assay 0000299 // integral to membrane of membrane fraction // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0045202 // synapse // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368927_at NM_017249 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017249.1 /DB_XREF=gi:8393754 /GEN=Mbc2 /FEA=FLmRNA /CNT=9 /TID=Rn.11636.1 /TIER=FL /STK=2 /UG=Rn.11636 /LL=29579 /DEF=Rattus norvegicus membrane bound C2 domain containing protein (Mbc2), mRNA. /PROD=membrane bound C2 domain containing protein /FL=gb:NM_017249.1 gb:AF099138.1 NM_017249 extended synaptotagmin-like protein 1 Esyt1 29579 NM_017249 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1368928_at NM_031786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031786.1 /DB_XREF=gi:13929111 /GEN=Rnf22 /FEA=FLmRNA /CNT=9 /TID=Rn.14524.1 /TIER=FL /STK=2 /UG=Rn.14524 /LL=83616 /DEF=Rattus norvegicus ring finger protein 22 (Rnf22), mRNA. /PROD=ring finger protein 22 /FL=gb:NM_031786.1 gb:AF036255.1 NM_031786 tripartite motif-containing 3 Trim3 83616 NM_031786 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368929_at NM_080577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080577.1 /DB_XREF=gi:18034778 /GEN=Npl4 /FEA=FLmRNA /CNT=9 /TID=Rn.41212.1 /TIER=FL /STK=2 /UG=Rn.41212 /LL=140639 /DEF=Rattus norvegicus homolog of yeast nuclear protein localization 4 (Npl4), mRNA. /PROD=homolog of yeast nuclear protein localization 4 /FL=gb:AF234600.1 gb:NM_080577.1 NM_080577 nuclear protein localization 4 homolog (S. cerevisiae) Nploc4 140639 NM_080577 0006944 // cellular membrane fusion // inferred from direct assay /// 0007030 // Golgi organization // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1368930_at NM_023021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023021.1 /DB_XREF=gi:12711687 /GEN=Kcnn4 /FEA=FLmRNA /CNT=9 /TID=Rn.44212.1 /TIER=FL /STK=2 /UG=Rn.44212 /LL=65206 /DEF=Rattus norvegicus intermediate conductance calcium-activated potassium channel (Kcnn4), mRNA. /PROD=intermediate conductance calcium-activatedpotassium channel /FL=gb:AF190458.1 gb:AF149250.1 gb:NM_023021.1 gb:AF156554.1 NM_023021 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4 Kcnn4 65206 NM_023021 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // traceable author statement /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // not recorded /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006884 // cell volume homeostasis // not recorded /// 0006884 // cell volume homeostasis // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0045332 // phospholipid translocation // not recorded /// 0045332 // phospholipid translocation // inferred from electronic annotation /// 0046541 // saliva secretion // not recorded /// 0046541 // saliva secretion // inferred from electronic annotation /// 0050714 // positive regulation of protein secretion // not recorded /// 0050714 // positive regulation of protein secretion // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // not recorded /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0015269 // calcium-activated potassium channel activity // inferred from direct assay /// 0015269 // calcium-activated potassium channel activity // not recorded /// 0015269 // calcium-activated potassium channel activity // inferred from electronic annotation 1368931_at NM_031238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031238.1 /DB_XREF=gi:13676844 /GEN=Sh3d2c1 /FEA=FLmRNA /CNT=9 /TID=Rn.5909.1 /TIER=FL /STK=2 /UG=Rn.5909 /LL=81921 /DEF=Rattus norvegicus SH3 domain protein 2 C1 (Sh3d2c1), mRNA. /PROD=SH3 domain protein 2 C1 /FL=gb:NM_031238.1 gb:AB008159.2 gb:AF227439.1 NM_031238 SH3-domain GRB2-like 3 Sh3gl3 81921 NM_031238 0006897 // endocytosis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1368932_at NM_031098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031098.1 /DB_XREF=gi:13592048 /GEN=Rock1 /FEA=FLmRNA /CNT=8 /TID=Rn.33613.1 /TIER=FL /STK=2 /UG=Rn.33613 /LL=81762 /DEF=Rattus norvegicus Rho-associated kinase beta (Rock1), mRNA. /PROD=Rho-associated kinase beta /FL=gb:U61266.1 gb:NM_031098.1 NM_031098 Rho-associated coiled-coil containing protein kinase 1 Rock1 81762 NM_031098 0000910 // cytokinesis // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0007010 // cytoskeleton organization // inferred from mutant phenotype /// 0007159 // leukocyte cell-cell adhesion // not recorded /// 0007159 // leukocyte cell-cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // inferred from mutant phenotype /// 0022614 // membrane to membrane docking // inferred from electronic annotation /// 0022614 // membrane to membrane docking // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0032060 // bleb assembly // inferred from electronic annotation /// 0032060 // bleb assembly // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0050900 // leukocyte migration // inferred from electronic annotation /// 0050900 // leukocyte migration // not recorded /// 0050901 // leukocyte tethering or rolling // inferred from electronic annotation /// 0050901 // leukocyte tethering or rolling // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005814 // centriole // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017049 // GTP-Rho binding // inferred from mutant phenotype /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1368933_at NM_012894 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012894.1 /DB_XREF=gi:6978444 /GEN=Adarb1 /FEA=FLmRNA /CNT=8 /TID=Rn.10254.1 /TIER=FL /STK=2 /UG=Rn.10254 /LL=25367 /DEF=Rattus norvegicus adenosine deaminase, RNA-specific, B1 (Adarb1), mRNA. /PROD=adenosine deaminase, RNA-specific, B1 /FL=gb:NM_012894.1 gb:U43534.1 NM_012894 adenosine deaminase, RNA-specific, B1 Adarb1 25367 NM_001111055 /// NM_001111056 /// NM_001111057 /// NM_012894 0006396 // RNA processing // inferred from electronic annotation /// 0006396 // RNA processing // not recorded /// 0006396 // RNA processing // inferred from sequence or structural similarity /// 0006397 // mRNA processing // inferred from electronic annotation /// 0016556 // mRNA modification // inferred from direct assay /// 0016556 // mRNA modification // non-traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from mutant phenotype /// 0005730 // nucleolus // inferred from mutant phenotype 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // not recorded /// 0003725 // double-stranded RNA binding // inferred from sequence or structural similarity /// 0003726 // double-stranded RNA adenosine deaminase activity // inferred from direct assay /// 0003726 // double-stranded RNA adenosine deaminase activity // not recorded /// 0003726 // double-stranded RNA adenosine deaminase activity // inferred from sequence or structural similarity /// 0003726 // double-stranded RNA adenosine deaminase activity // non-traceable author statement /// 0003726 // double-stranded RNA adenosine deaminase activity // inferred from electronic annotation /// 0004000 // adenosine deaminase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368934_at NM_016999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_016999.1 /DB_XREF=gi:8393237 /GEN=Cyp4b1 /FEA=FLmRNA /CNT=8 /TID=Rn.5721.1 /TIER=FL /STK=2 /UG=Rn.5721 /LL=24307 /DEF=Rattus norvegicus Cytochrome P450, subfamily IVB, polypeptide 1 (Cyp4b1), mRNA. /PROD=cytochrome P450, subfamily IVB, polypeptide 1see also D5M4Rp1 /FL=gb:NM_016999.1 gb:M14972.1 NM_016999 cytochrome P450, family 4, subfamily a, polypeptide 1 /// cytochrome P450, family 4, subfamily a, polypeptide 10 Cyp4a1 /// Cyp4a10 170544 /// 50549 NM_153307 /// NM_175837 0001676 // long-chain fatty acid metabolic process // not recorded /// 0001822 // kidney development // inferred from expression pattern /// 0001890 // placenta development // inferred from expression pattern /// 0019369 // arachidonic acid metabolic process // inferred from mutant phenotype /// 0043651 // linoleic acid metabolic process // inferred from direct assay /// 0046456 // icosanoid biosynthetic process // inferred from mutant phenotype /// 0048252 // lauric acid metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008391 // arachidonic acid monooxygenase activity // inferred from direct assay /// 0008391 // arachidonic acid monooxygenase activity // inferred from mutant phenotype /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0018685 // alkane 1-monooxygenase activity // not recorded /// 0018685 // alkane 1-monooxygenase activity // inferred from mutant phenotype /// 0018685 // alkane 1-monooxygenase activity // inferred from electronic annotation /// 0019825 // oxygen binding // not recorded /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368935_at NM_012920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012920.1 /DB_XREF=gi:6978592 /GEN=Camk2a /FEA=FLmRNA /CNT=8 /TID=Rn.63609.1 /TIER=FL /STK=2 /UG=Rn.63609 /LL=25400 /DEF=Rattus norvegicus Ca2+calmodulin-dependent protein kinase II alpha (Camk2a), mRNA. /PROD=ca2+calmodulin-dependent protein kinase IIalpha /FL=gb:J02942.1 gb:NM_012920.1 NM_012920 calcium/calmodulin-dependent protein kinase II alpha Camk2a 25400 NM_012920 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from direct assay /// 0046777 // protein autophosphorylation // not recorded /// 0046928 // regulation of neurotransmitter secretion // not recorded /// 0048168 // regulation of neuronal synaptic plasticity // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005954 // calcium- and calmodulin-dependent protein kinase complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0030666 // endocytic vesicle membrane // not recorded /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from direct assay /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0035254 // glutamate receptor binding // not recorded 1368936_at NM_080887 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080887.1 /DB_XREF=gi:18266685 /GEN=Txnl /FEA=FLmRNA /CNT=8 /TID=Rn.40430.1 /TIER=FL /STK=2 /UG=Rn.40430 /DEF=Rattus norvegicus thioredoxin-like (32kD) (Txnl), mRNA. /PROD=thioredoxin-like (32kD) /FL=gb:AF140358.1 gb:NM_080887.1 NM_080887 thioredoxin-like 1 Txnl1 140922 NM_080887 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0015036 // disulfide oxidoreductase activity // not recorded 1368937_at NM_031822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031822.1 /DB_XREF=gi:13929173 /GEN=Ncoa2 /FEA=FLmRNA /CNT=7 /TID=Rn.15932.1 /TIER=FL /STK=2 /UG=Rn.15932 /LL=83724 /DEF=Rattus norvegicus nuclear receptor coactivator 2 (Ncoa2), mRNA. /PROD=nuclear receptor coactivator 2 /FL=gb:NM_031822.1 gb:AF136943.1 NM_031822 nuclear receptor coactivator 2 Ncoa2 83724 NM_031822 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0010469 // regulation of receptor activity // not recorded /// 0021549 // cerebellum development // inferred from expression pattern /// 0030518 // steroid hormone receptor signaling pathway // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005874 // microtubule // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0048786 // presynaptic active zone // inferred from direct assay 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016922 // ligand-dependent nuclear receptor binding // not recorded /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from electronic annotation /// 0030375 // thyroid hormone receptor coactivator activity // inferred from electronic annotation /// 0030375 // thyroid hormone receptor coactivator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0035257 // nuclear hormone receptor binding // inferred from electronic annotation 1368938_at NM_032063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032063.1 /DB_XREF=gi:14091745 /GEN=Dll1 /FEA=FLmRNA /CNT=7 /TID=Rn.10628.1 /TIER=FL /STK=2 /UG=Rn.10628 /LL=84010 /DEF=Rattus norvegicus delta (Drosophila)-like 1 (Dll1), mRNA. /PROD=delta (Drosophila)-like 1 /FL=gb:NM_032063.1 gb:U78889.1 NM_032063 delta-like 1 (Drosophila) Dll1 84010 NM_032063 0001709 // cell fate determination // traceable author statement /// 0001756 // somitogenesis // not recorded /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001757 // somite specification // inferred from electronic annotation /// 0001757 // somite specification // not recorded /// 0007154 // cell communication // inferred from electronic annotation /// 0007219 // Notch signaling pathway // non-traceable author statement /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // not recorded /// 0007386 // compartment pattern formation // inferred from electronic annotation /// 0007386 // compartment pattern formation // not recorded /// 0007399 // nervous system development // non-traceable author statement /// 0009912 // auditory receptor cell fate commitment // non-traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045608 // negative regulation of auditory receptor cell differentiation // inferred from electronic annotation /// 0045608 // negative regulation of auditory receptor cell differentiation // not recorded /// 0048839 // inner ear development // inferred from electronic annotation /// 0048839 // inner ear development // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded 0005112 // Notch binding // inferred from physical interaction /// 0005112 // Notch binding // not recorded /// 0005112 // Notch binding // traceable author statement /// 0005112 // Notch binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368939_a_at L14447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L14447.2 /DB_XREF=gi:7579926 /GEN=trkC /FEA=FLmRNA /CNT=2 /TID=Rn.9963.2 /TIER=FL /STK=1 /UG=Rn.9963 /LL=29613 /DEF=Rattus norvegicus tyrosine protein kinase (trkC) mRNA, complete cds. /PROD=tyrosine protein kinase /FL=gb:L14447.2 L14447 neurotrophic tyrosine kinase, receptor, type 3 Ntrk3 29613 NM_019248 0001764 // neuron migration // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006950 // response to stress // inferred from expression pattern /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0019056 // modulation by virus of host transcription // inferred from expression pattern /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042490 // mechanoreceptor differentiation // inferred from electronic annotation /// 0042490 // mechanoreceptor differentiation // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0046777 // protein autophosphorylation // inferred from mutant phenotype /// 0048665 // neuron fate specification // inferred from mutant phenotype /// 0048678 // response to axon injury // inferred from expression pattern /// 0048691 // positive regulation of axon extension involved in regeneration // inferred from electronic annotation /// 0048691 // positive regulation of axon extension involved in regeneration // not recorded /// 0048712 // negative regulation of astrocyte differentiation // inferred from mutant phenotype /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0060548 // negative regulation of cell death // inferred from mutant phenotype /// 0071300 // cellular response to retinoic acid // inferred from expression pattern /// 0090102 // cochlea development // inferred from expression pattern 0000139 // Golgi membrane // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005030 // neurotrophin receptor activity // inferred from mutant phenotype /// 0005030 // neurotrophin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1368940_at NM_017255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017255.1 /DB_XREF=gi:8393890 /GEN=P2ry2 /FEA=FLmRNA /CNT=7 /TID=Rn.11102.1 /TIER=FL /STK=2 /UG=Rn.11102 /LL=29597 /DEF=Rattus norvegicus purinergic receptor P2Y, G-protein coupled 2 (P2ry2), mRNA. /PROD=purinergic receptor P2Y, G-protein coupled 2 /FL=gb:L46865.1 gb:NM_017255.1 gb:U09402.1 gb:U56839.1 NM_017255 purinergic receptor P2Y, G-protein coupled, 2 P2ry2 29597 NM_017255 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0007568 // aging // inferred from expression pattern /// 0009790 // embryo development // inferred from expression pattern /// 0010976 // positive regulation of neuron projection development // inferred from direct assay /// 0014911 // positive regulation of smooth muscle cell migration // inferred from mutant phenotype /// 0019233 // sensory perception of pain // inferred from direct assay /// 0030279 // negative regulation of ossification // inferred from direct assay /// 0032308 // positive regulation of prostaglandin secretion // inferred from direct assay /// 0032722 // positive regulation of chemokine production // inferred from direct assay /// 0042060 // wound healing // inferred from expression pattern /// 0042312 // regulation of vasodilation // inferred from direct assay /// 0060406 // positive regulation of penile erection // inferred from direct assay /// 0070848 // response to growth factor stimulus // inferred from expression pattern /// 0071222 // cellular response to lipopolysaccharide // inferred from expression pattern /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071415 // cellular response to purine // inferred from expression pattern 0005739 // mitochondrion // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005769 // early endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0031686 // A1 adenosine receptor binding // inferred from physical interaction /// 0045028 // purinergic nucleotide receptor activity, G-protein coupled // traceable author statement /// 0045028 // purinergic nucleotide receptor activity, G-protein coupled // inferred from electronic annotation /// 0045030 // UTP-activated nucleotide receptor activity // inferred from direct assay 1368941_at NM_032076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032076.1 /DB_XREF=gi:14091765 /GEN=Ptgerep4 /FEA=FLmRNA /CNT=7 /TID=Rn.16062.1 /TIER=FL /STK=2 /UG=Rn.16062 /LL=84023 /DEF=Rattus norvegicus prostaglandin E receptor 4 (subtype EP4) (Ptgerep4), mRNA. /PROD=prostaglandin E receptor 4 (subtype EP4) /FL=gb:NM_032076.1 gb:U94709.1 NM_032076 prostaglandin E receptor 4 (subtype EP4) Ptger4 84023 NM_032076 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0030278 // regulation of ossification // inferred from electronic annotation /// 0030278 // regulation of ossification // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004955 // prostaglandin receptor activity // inferred from electronic annotation /// 0004957 // prostaglandin E receptor activity // inferred from electronic annotation 1368942_at NM_024383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024383.1 /DB_XREF=gi:13242286 /GEN=Hes5 /FEA=FLmRNA /CNT=7 /TID=Rn.22422.1 /TIER=FL /STK=2 /UG=Rn.22422 /LL=79225 /DEF=Rattus norvegicus hairy and enhancer of split 5 (Drosophila) (Hes5), mRNA. /PROD=hairy and enhancer of split 5 (Drosophila) /FL=gb:NM_024383.1 gb:D12516.1 NM_024383 hairy and enhancer of split 5 (Drosophila) Hes5 79225 NM_024383 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0007224 // smoothened signaling pathway // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016481 // negative regulation of transcription // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from expression pattern /// 0042491 // auditory receptor cell differentiation // inferred from electronic annotation /// 0042491 // auditory receptor cell differentiation // not recorded /// 0042668 // auditory receptor cell fate determination // inferred from electronic annotation /// 0042668 // auditory receptor cell fate determination // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from direct assay /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded /// 0050767 // regulation of neurogenesis // inferred from electronic annotation /// 0050767 // regulation of neurogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation 1368943_at NM_020082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020082.1 /DB_XREF=gi:9910535 /GEN=Rnase4 /FEA=FLmRNA /CNT=7 /TID=Rn.22804.1 /TIER=FL /STK=2 /UG=Rn.22804 /LL=56759 /DEF=Rattus norvegicus ribonuclease 4 (Rnase4), mRNA. /PROD=ribonuclease 4 /FL=gb:NM_020082.1 gb:AF041066.1 NM_020082 ribonuclease, RNase A family 4 Rnase4 56759 NM_020082 0001525 // angiogenesis // inferred from sequence or structural similarity /// 0001666 // response to hypoxia // inferred from sequence or structural similarity /// 0001889 // liver development // inferred from expression pattern /// 0001938 // positive regulation of endothelial cell proliferation // inferred from sequence or structural similarity /// 0006651 // diacylglycerol biosynthetic process // inferred from sequence or structural similarity /// 0007202 // activation of phospholipase C activity // inferred from direct assay /// 0007202 // activation of phospholipase C activity // inferred from sequence or structural similarity /// 0009303 // rRNA transcription // inferred from sequence or structural similarity /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0030041 // actin filament polymerization // inferred from sequence or structural similarity /// 0032431 // activation of phospholipase A2 activity // inferred from sequence or structural similarity /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from sequence or structural similarity /// 0050714 // positive regulation of protein secretion // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005605 // basal lamina // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from direct assay /// 0032311 // angiogenin-PRI complex // inferred from sequence or structural similarity /// 0033178 // proton-transporting two-sector ATPase complex, catalytic domain // inferred from electronic annotation /// 0033180 // proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from sequence or structural similarity /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004522 // pancreatic ribonuclease activity // inferred from electronic annotation /// 0004540 // ribonuclease activity // inferred from sequence or structural similarity /// 0005102 // receptor binding // inferred from sequence or structural similarity /// 0005507 // copper ion binding // inferred from sequence or structural similarity /// 0008201 // heparin binding // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046933 // hydrogen ion transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 1368944_at NM_012788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012788.1 /DB_XREF=gi:6978762 /GEN=Dlg1 /FEA=FLmRNA /CNT=17 /TID=Rn.11375.1 /TIER=FL /STK=2 /UG=Rn.11375 /LL=25252 /DEF=Rattus norvegicus Drosophila discs-large tumor suppressor homologue (synapse associated protein) (Dlg1), mRNA. /PROD=drosophila discs-large tumor suppressorhomologue (synapse associated protein) /FL=gb:NM_012788.1 gb:U14950.1 NM_012788 discs, large homolog 1 (Drosophila) Dlg1 25252 NM_012788 0001657 // ureteric bud development // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001771 // immunological synapse formation // not recorded /// 0001935 // endothelial cell proliferation // not recorded /// 0001935 // endothelial cell proliferation // inferred from sequence or structural similarity /// 0002088 // lens development in camera-type eye // not recorded /// 0002369 // T cell cytokine production // not recorded /// 0007015 // actin filament organization // not recorded /// 0007015 // actin filament organization // inferred from sequence or structural similarity /// 0007155 // cell adhesion // inferred from expression pattern /// 0008104 // protein localization // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0016337 // cell-cell adhesion // not recorded /// 0016337 // cell-cell adhesion // inferred from sequence or structural similarity /// 0030432 // peristalsis // not recorded /// 0030838 // positive regulation of actin filament polymerization // not recorded /// 0030866 // cortical actin cytoskeleton organization // not recorded /// 0030866 // cortical actin cytoskeleton organization // inferred from sequence or structural similarity /// 0031579 // membrane raft organization // not recorded /// 0032147 // activation of protein kinase activity // not recorded /// 0032880 // regulation of protein localization // inferred from mutant phenotype /// 0042110 // T cell activation // not recorded /// 0042130 // negative regulation of T cell proliferation // not recorded /// 0042391 // regulation of membrane potential // not recorded /// 0042982 // amyloid precursor protein metabolic process // not recorded /// 0043268 // positive regulation of potassium ion transport // inferred from mutant phenotype /// 0045930 // negative regulation of mitotic cell cycle // not recorded /// 0045930 // negative regulation of mitotic cell cycle // inferred from sequence or structural similarity /// 0048608 // reproductive structure development // not recorded /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048729 // tissue morphogenesis // not recorded /// 0048745 // smooth muscle tissue development // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0060022 // hard palate development // not recorded 0001772 // immunological synapse // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009925 // basal plasma membrane // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // not recorded /// 0014069 // postsynaptic density // traceable author statement /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from sequence or structural similarity /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // not recorded /// 0019717 // synaptosome // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030054 // cell junction // not recorded /// 0030315 // T-tubule // inferred from direct assay /// 0031253 // cell projection membrane // not recorded /// 0031594 // neuromuscular junction // not recorded /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0045121 // membrane raft // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0045211 // postsynaptic membrane // traceable author statement /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0019902 // phosphatase binding // not recorded /// 0019902 // phosphatase binding // inferred from sequence or structural similarity /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0032947 // protein complex scaffold // not recorded /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction 1368945_at NM_017178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017178.1 /DB_XREF=gi:8392989 /GEN=Bmp2 /FEA=FLmRNA /CNT=16 /TID=Rn.12687.1 /TIER=FL /STK=2 /UG=Rn.12687 /LL=29373 /DEF=Rattus norvegicus bone morphogenetic protein 2 (Bmp2), mRNA. /PROD=bone morphogenetic protein 2 /FL=gb:NM_017178.1 NM_017178 bone morphogenetic protein 2 Bmp2 29373 NM_017178 0001503 // ossification // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001837 // epithelial to mesenchymal transition // not recorded /// 0001837 // epithelial to mesenchymal transition // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0003130 // BMP signaling pathway involved in heart induction // inferred from electronic annotation /// 0003130 // BMP signaling pathway involved in heart induction // not recorded /// 0003181 // atrioventricular valve morphogenesis // inferred from electronic annotation /// 0003181 // atrioventricular valve morphogenesis // not recorded /// 0003203 // endocardial cushion morphogenesis // inferred from electronic annotation /// 0003203 // endocardial cushion morphogenesis // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007219 // Notch signaling pathway // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from direct assay /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010628 // positive regulation of gene expression // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // not recorded /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from electronic annotation /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from sequence or structural similarity /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0010922 // positive regulation of phosphatase activity // inferred from electronic annotation /// 0010922 // positive regulation of phosphatase activity // not recorded /// 0021537 // telencephalon development // not recorded /// 0021537 // telencephalon development // inferred from electronic annotation /// 0021978 // telencephalon regionalization // inferred from electronic annotation /// 0021978 // telencephalon regionalization // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0030282 // bone mineralization // not recorded /// 0030282 // bone mineralization // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // not recorded /// 0030509 // BMP signaling pathway // inferred from direct assay /// 0030509 // BMP signaling pathway // not recorded /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0031648 // protein destabilization // inferred from electronic annotation /// 0031648 // protein destabilization // not recorded /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0032582 // negative regulation of gene-specific transcription // inferred from electronic annotation /// 0035051 // cardiac cell differentiation // inferred from electronic annotation /// 0035051 // cardiac cell differentiation // not recorded /// 0035054 // embryonic heart tube anterior/posterior pattern formation // inferred from electronic annotation /// 0035054 // embryonic heart tube anterior/posterior pattern formation // not recorded /// 0040007 // growth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042482 // positive regulation of odontogenesis // inferred from electronic annotation /// 0042482 // positive regulation of odontogenesis // not recorded /// 0042487 // regulation of odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042487 // regulation of odontogenesis of dentine-containing tooth // not recorded /// 0042698 // ovulation cycle // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045165 // cell fate commitment // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // not recorded /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045778 // positive regulation of ossification // not recorded /// 0045778 // positive regulation of ossification // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048711 // positive regulation of astrocyte differentiation // inferred from electronic annotation /// 0048711 // positive regulation of astrocyte differentiation // not recorded /// 0048762 // mesenchymal cell differentiation // not recorded /// 0048762 // mesenchymal cell differentiation // inferred from sequence or structural similarity /// 0048762 // mesenchymal cell differentiation // inferred from electronic annotation /// 0050769 // positive regulation of neurogenesis // inferred from direct assay /// 0051216 // cartilage development // inferred from electronic annotation /// 0055008 // cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055008 // cardiac muscle tissue morphogenesis // not recorded /// 0060039 // pericardium development // inferred from electronic annotation /// 0060039 // pericardium development // not recorded /// 0060128 // adrenocorticotropin hormone secreting cell differentiation // inferred from electronic annotation /// 0060128 // adrenocorticotropin hormone secreting cell differentiation // not recorded /// 0060129 // thyroid-stimulating hormone-secreting cell differentiation // inferred from electronic annotation /// 0060129 // thyroid-stimulating hormone-secreting cell differentiation // not recorded /// 0060317 // cardiac epithelial to mesenchymal transition // inferred from electronic annotation /// 0060317 // cardiac epithelial to mesenchymal transition // not recorded /// 0060389 // pathway-restricted SMAD protein phosphorylation // not recorded /// 0060389 // pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // not recorded /// 0060395 // SMAD protein signal transduction // inferred from sequence or structural similarity /// 0060395 // SMAD protein signal transduction // inferred from electronic annotation /// 0060804 // positive regulation of WNT receptor signaling pathway by BMP signaling pathway // not recorded /// 0061036 // positive regulation of cartilage development // inferred from electronic annotation /// 0061036 // positive regulation of cartilage development // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // not recorded /// 0071407 // cellular response to organic cyclic substance // inferred from electronic annotation /// 0071407 // cellular response to organic cyclic substance // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0031988 // membrane-bounded vesicle // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0004745 // retinol dehydrogenase activity // inferred from electronic annotation /// 0004745 // retinol dehydrogenase activity // not recorded /// 0005102 // receptor binding // inferred from mutant phenotype /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016566 // specific transcriptional repressor activity // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // not recorded /// 0019211 // phosphatase activator activity // inferred from electronic annotation /// 0019211 // phosphatase activator activity // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046332 // SMAD binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0070700 // BMP receptor binding // inferred from electronic annotation /// 0070700 // BMP receptor binding // not recorded 1368946_at NM_024150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024150.1 /DB_XREF=gi:13162340 /GEN=Arf2 /FEA=FLmRNA /CNT=11 /TID=Rn.2733.1 /TIER=FL /STK=2 /UG=Rn.2733 /LL=79119 /DEF=Rattus norvegicus ADP-ribosylation factor 2 (Arf2), mRNA. /PROD=ADP-ribosylation factor 2 /FL=gb:L12381.1 gb:NM_024150.1 NM_024150 ADP-ribosylation factor 2 Arf2 79119 NM_024150 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1368947_at NM_024127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024127.1 /DB_XREF=gi:13162297 /GEN=Gadd45a /FEA=FLmRNA /CNT=11 /TID=Rn.10250.1 /TIER=FL /STK=2 /UG=Rn.10250 /LL=25112 /DEF=Rattus norvegicus DNA-damage-inducible transcript 1 (Gadd45a), mRNA. /PROD=DNA-damage-inducible transcript 1 /FL=gb:L32591.1 gb:NM_024127.1 NM_024127 growth arrest and DNA-damage-inducible, alpha Gadd45a 25112 NM_024127 0000086 // G2/M transition of mitotic cell cycle // inferred from expression pattern /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006974 // response to DNA damage stimulus // traceable author statement /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007098 // centrosome cycle // inferred from electronic annotation /// 0007098 // centrosome cycle // not recorded /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368948_at NM_030863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030863.1 /DB_XREF=gi:13540688 /GEN=Msn /FEA=FLmRNA /CNT=9 /TID=Rn.10773.1 /TIER=FL /STK=2 /UG=Rn.10773 /LL=81521 /DEF=Rattus norvegicus moesin (Msn), mRNA. /PROD=moesin /FL=gb:NM_030863.1 gb:AF004811.1 NM_030863 moesin Msn 81521 NM_030863 0007159 // leukocyte cell-cell adhesion // inferred from electronic annotation /// 0007159 // leukocyte cell-cell adhesion // not recorded /// 0022614 // membrane to membrane docking // inferred from electronic annotation /// 0022614 // membrane to membrane docking // not recorded /// 0050900 // leukocyte migration // inferred from electronic annotation /// 0050900 // leukocyte migration // not recorded 0001931 // uropod // inferred from electronic annotation /// 0001931 // uropod // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005902 // microvillus // not recorded /// 0005902 // microvillus // inferred from electronic annotation /// 0009898 // internal side of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0019898 // extrinsic to membrane // inferred from electronic annotation /// 0030175 // filopodium // not recorded /// 0030175 // filopodium // inferred from electronic annotation /// 0030667 // secretory granule membrane // inferred from direct assay /// 0031527 // filopodium membrane // inferred from direct assay /// 0031528 // microvillus membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation 0003779 // actin binding // inferred from direct assay /// 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0030674 // protein binding, bridging // traceable author statement /// 0050839 // cell adhesion molecule binding // inferred from electronic annotation /// 0050839 // cell adhesion molecule binding // not recorded 1368949_at NM_053820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053820.1 /DB_XREF=gi:16758667 /GEN=Ebf /FEA=FLmRNA /CNT=9 /TID=Rn.11257.1 /TIER=FL /STK=2 /UG=Rn.11257 /LL=116543 /DEF=Rattus norvegicus early B-cell factor (olfactory neuronal transcription factor 1) (Ebf), mRNA. /PROD=early B-cell factor (olfactory neuronaltranscription factor 1) /FL=gb:NM_053820.1 gb:L24051.1 NM_053820 early B-cell factor 1 Ebf1 116543 NM_053820 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070742 // C2H2 zinc finger domain binding // inferred from physical interaction 1368950_a_at D13213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D13213.1 /DB_XREF=gi:286237 /FEA=mRNA /CNT=1 /TID=Rn.10063.2 /TIER=ConsEnd /STK=0 /UG=Rn.10063 /LL=24412 /UG_GENE=Grin2d /DEF=Rattus norvegicus mRNA for N-methyl-D-aspartate receptor subunit (NMDAR2D-1). /PROD=N-methyl-D-aspartate receptor subunit D13213 glutamate receptor, ionotropic, N-methyl D-aspartate 2D Grin2d 24412 NM_022797 0001964 // startle response // inferred from electronic annotation /// 0001964 // startle response // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0035249 // synaptic transmission, glutamatergic // inferred from mutant phenotype /// 0050966 // detection of mechanical stimulus involved in sensory perception of pain // not recorded /// 0051930 // regulation of sensory perception of pain // inferred from electronic annotation /// 0051930 // regulation of sensory perception of pain // not recorded /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0008328 // ionotropic glutamate receptor complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // inferred from direct assay /// 0019717 // synaptosome // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030288 // outer membrane-bounded periplasmic space // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from direct assay /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from direct assay /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from mutant phenotype /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // not recorded /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016595 // glutamate binding // inferred from mutant phenotype /// 0022843 // voltage-gated cation channel activity // inferred from mutant phenotype /// 0042165 // neurotransmitter binding // inferred from mutant phenotype 1368951_at NM_022797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022797.1 /DB_XREF=gi:12248180 /GEN=Grin2d /FEA=FLmRNA /CNT=8 /TID=Rn.10063.1 /TIER=FL /STK=2 /UG=Rn.10063 /LL=24412 /DEF=Rattus norvegicus Glutamate receptor, ionotropic, N-methyl D-aspartate 2D (Grin2d), mRNA. /PROD=glutamate receptor, ionotropic, N-methylD-aspartate 2D /FL=gb:L31612.1 gb:NM_022797.1 gb:L31611.1 gb:U08260.1 NM_022797 glutamate receptor, ionotropic, N-methyl D-aspartate 2D Grin2d 24412 NM_022797 0001964 // startle response // inferred from electronic annotation /// 0001964 // startle response // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0035249 // synaptic transmission, glutamatergic // inferred from mutant phenotype /// 0050966 // detection of mechanical stimulus involved in sensory perception of pain // not recorded /// 0051930 // regulation of sensory perception of pain // inferred from electronic annotation /// 0051930 // regulation of sensory perception of pain // not recorded /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0008328 // ionotropic glutamate receptor complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // inferred from direct assay /// 0019717 // synaptosome // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030288 // outer membrane-bounded periplasmic space // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from direct assay /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from direct assay /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from mutant phenotype /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // not recorded /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016595 // glutamate binding // inferred from mutant phenotype /// 0022843 // voltage-gated cation channel activity // inferred from mutant phenotype /// 0042165 // neurotransmitter binding // inferred from mutant phenotype 1368952_at AF109405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF109405.1 /DB_XREF=gi:4107514 /FEA=FLmRNA /CNT=8 /TID=Rn.30039.1 /TIER=FL /STK=1 /UG=Rn.30039 /LL=83633 /UG_GENE=Gpr51 /DEF=Rattus norvegicus GABA-B receptor 2 mRNA, complete cds. /PROD=GABA-B receptor 2 /FL=gb:AF074482.1 gb:AF058795.1 gb:NM_031802.1 gb:AF109405.1 AF109405 gamma-aminobutyric acid (GABA) B receptor 2 Gabbr2 83633 NM_031802 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004965 // GABA-B receptor activity // inferred from direct assay /// 0004965 // GABA-B receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368953_at NM_133596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133596.1 /DB_XREF=gi:19424301 /GEN=Uggt /FEA=FLmRNA /CNT=8 /TID=Rn.32413.1 /TIER=FL /STK=2 /UG=Rn.32413 /LL=171129 /DEF=Rattus norvegicus UDP-glucose glycoprotein: glucosyltransferase UGGT (Uggt), mRNA. /PROD=UDP-glucose glycoprotein: glucosyltransferaseUGGT /FL=gb:NM_133596.1 gb:AF200359.1 NM_133596 UDP-glucose glycoprotein glucosyltransferase 1 Uggt1 171129 NM_133596 0006457 // protein folding // traceable author statement /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // inferred from direct assay /// 0005793 // ER-Golgi intermediate compartment // inferred from electronic annotation 0003980 // UDP-glucose:glycoprotein glucosyltransferase activity // inferred from direct assay /// 0003980 // UDP-glucose:glycoprotein glucosyltransferase activity // not recorded /// 0003980 // UDP-glucose:glycoprotein glucosyltransferase activity // traceable author statement /// 0003980 // UDP-glucose:glycoprotein glucosyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from direct assay /// 0051082 // unfolded protein binding // not recorded /// 0051082 // unfolded protein binding // inferred from electronic annotation 1368954_at D88672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D88672.1 /DB_XREF=gi:2077942 /FEA=FLmRNA /CNT=8 /TID=Rn.9798.1 /TIER=FL /STK=1 /UG=Rn.9798 /LL=25097 /UG_GENE=Pld2 /DEF=Rattus norvegicus mRNA for phospholipase D, complete cds. /PROD=phospholipase D /FL=gb:NM_033299.1 gb:D88672.1 gb:AB003172.1 D88672 phospholipase D2 Pld2 25097 NM_033299 0001666 // response to hypoxia // inferred from direct assay /// 0002031 // G-protein coupled receptor internalization // inferred from electronic annotation /// 0002031 // G-protein coupled receptor internalization // not recorded /// 0006898 // receptor-mediated endocytosis // not recorded /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009395 // phospholipid catabolic process // inferred from mutant phenotype /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0042542 // response to hydrogen peroxide // inferred from mutant phenotype /// 0043306 // positive regulation of mast cell degranulation // inferred from mutant phenotype /// 0043434 // response to peptide hormone stimulus // inferred from mutant phenotype /// 0045785 // positive regulation of cell adhesion // inferred from mutant phenotype /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from direct assay /// 0031526 // brush border membrane // inferred from electronic annotation /// 0031526 // brush border membrane // not recorded /// 0042383 // sarcolemma // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004630 // phospholipase D activity // inferred from direct assay /// 0004630 // phospholipase D activity // inferred from electronic annotation /// 0005080 // protein kinase C binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation /// 0070290 // NAPE-specific phospholipase D activity // inferred from electronic annotation 1368955_at NM_022184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022184.1 /DB_XREF=gi:11559946 /GEN=Cask /FEA=FLmRNA /CNT=8 /TID=Rn.72627.1 /TIER=FL /STK=2 /UG=Rn.72627 /LL=29647 /DEF=Rattus norvegicus calciumcalmodulin-dependent serine protein kinase (Cask), mRNA. /PROD=calciumcalmodulin-dependent serine proteinkinase /FL=gb:U47110.1 gb:NM_022184.1 NM_022184 calcium/calmodulin-dependent serine protein kinase (MAGUK family) Cask 29647 NM_022184 0006461 // protein complex assembly // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0019717 // synaptosome // not recorded /// 0030425 // dendrite // inferred from direct assay /// 0043005 // neuron projection // inferred from physical interaction /// 0043234 // protein complex // inferred from direct assay /// 0045202 // synapse // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // traceable author statement /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // traceable author statement /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from mutant phenotype /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction /// 0042043 // neurexin binding // inferred from physical interaction /// 0045028 // purinergic nucleotide receptor activity, G-protein coupled // inferred from electronic annotation 1368956_at NM_022868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022868.1 /DB_XREF=gi:12408331 /GEN=Pcdh8 /FEA=FLmRNA /CNT=8 /TID=Rn.23337.1 /TIER=FL /STK=2 /UG=Rn.23337 /LL=64865 /DEF=Rattus norvegicus protocadherin 8 (Pcdh8), mRNA. /PROD=protocadherin 8 /FL=gb:NM_022868.1 gb:AB026154.1 NM_022868 protocadherin 8 Pcdh8 64865 NM_022868 0001756 // somitogenesis // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from direct assay /// 0007616 // long-term memory // traceable author statement /// 0016331 // morphogenesis of embryonic epithelium // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1368957_at NM_024138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024138.1 /DB_XREF=gi:13162315 /GEN=Gng7 /FEA=FLmRNA /CNT=8 /TID=Rn.11335.1 /TIER=FL /STK=2 /UG=Rn.11335 /LL=58979 /DEF=Rattus norvegicus guanine nucleotide binding protein (G protein), gamma 7 subunit (Gng7), mRNA. /PROD=guanine nucleotide binding protein (G protein),gamma 7 subunit /FL=gb:L23219.1 gb:NM_024138.1 NM_024138 guanine nucleotide binding protein (G protein), gamma 7 Gng7 58979 NM_024138 0001662 // behavioral fear response // inferred from electronic annotation /// 0001662 // behavioral fear response // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007168 // receptor guanylyl cyclase signaling pathway // inferred from electronic annotation /// 0007168 // receptor guanylyl cyclase signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0045761 // regulation of adenylate cyclase activity // inferred from electronic annotation /// 0045761 // regulation of adenylate cyclase activity // not recorded 0005834 // heterotrimeric G-protein complex // non-traceable author statement /// 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded 1368958_at NM_017294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017294.1 /DB_XREF=gi:8393895 /GEN=Pacsin1 /FEA=FLmRNA /CNT=8 /TID=Rn.42940.1 /TIER=FL /STK=2 /UG=Rn.42940 /LL=29704 /DEF=Rattus norvegicus protein kinase C and casein kinase substrate in neurons 1 (Pacsin1), mRNA. /PROD=protein kinase C and casein kinase substrate inneurons 1 /FL=gb:AF104402.1 gb:NM_017294.1 NM_017294 protein kinase C and casein kinase substrate in neurons 1 Pacsin1 29704 NM_017294 0006897 // endocytosis // inferred from electronic annotation /// 0007010 // cytoskeleton organization // inferred from direct assay /// 0045806 // negative regulation of endocytosis // inferred from electronic annotation /// 0045806 // negative regulation of endocytosis // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005802 // trans-Golgi network // not recorded /// 0030137 // COPI-coated vesicle // inferred from electronic annotation /// 0030137 // COPI-coated vesicle // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // not recorded 1368959_at NM_017294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017294.1 /DB_XREF=gi:8393895 /GEN=Pacsin1 /FEA=FLmRNA /CNT=8 /TID=Rn.42940.1 /TIER=ConsEnd /STK=0 /UG=Rn.42940 /LL=29704 /DEF=Rattus norvegicus protein kinase C and casein kinase substrate in neurons 1 (Pacsin1), mRNA. /PROD=protein kinase C and casein kinase substrate inneurons 1 /FL=gb:AF104402.1 gb:NM_017294.1 NM_017294 protein kinase C and casein kinase substrate in neurons 1 Pacsin1 29704 NM_017294 0006897 // endocytosis // inferred from electronic annotation /// 0007010 // cytoskeleton organization // inferred from direct assay /// 0045806 // negative regulation of endocytosis // inferred from electronic annotation /// 0045806 // negative regulation of endocytosis // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005802 // trans-Golgi network // not recorded /// 0030137 // COPI-coated vesicle // inferred from electronic annotation /// 0030137 // COPI-coated vesicle // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // not recorded 1368960_at NM_053862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053862.1 /DB_XREF=gi:16758727 /GEN=Lgals8 /FEA=FLmRNA /CNT=8 /TID=Rn.10069.1 /TIER=FL /STK=2 /UG=Rn.10069 /LL=116641 /DEF=Rattus norvegicus lectin, galactose binding, soluble 8 (Lgals8), mRNA. /PROD=lectin, galactose binding, soluble 8 /FL=gb:NM_053862.1 gb:U09824.1 NM_053862 lectin, galactoside-binding, soluble, 8 Lgals8 116641 NM_053862 0005737 // cytoplasm // inferred from electronic annotation 0005529 // sugar binding // inferred from electronic annotation 1368961_at NM_053606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053606.1 /DB_XREF=gi:16758395 /GEN=Mmp23 /FEA=FLmRNA /CNT=8 /TID=Rn.22562.1 /TIER=FL /STK=2 /UG=Rn.22562 /LL=94339 /DEF=Rattus norvegicus Matrix metalloproteinase 23 (Mmp23), mRNA. /PROD=Matrix metalloproteinase 23 /FL=gb:NM_053606.1 gb:AB010960.1 NM_053606 matrix metallopeptidase 23 Mmp23 94339 NM_053606 0000003 // reproduction // not recorded /// 0000003 // reproduction // inferred from sequence or structural similarity /// 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // inferred from sequence or structural similarity 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // not recorded /// 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368962_at NM_021679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021679.1 /DB_XREF=gi:11067402 /GEN=Nxph3 /FEA=FLmRNA /CNT=8 /TID=Rn.42881.1 /TIER=FL /STK=2 /UG=Rn.42881 /LL=59315 /DEF=Rattus norvegicus neurexophilin 3 (Nxph3), mRNA. /PROD=neurexophilin 3 /FL=gb:NM_021679.1 gb:AF042713.1 NM_021679 neurexophilin 3 Nxph3 59315 NM_021679 0005576 // extracellular region // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded 1368963_at NM_013160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013160.1 /DB_XREF=gi:7106366 /GEN=Mxi1 /FEA=FLmRNA /CNT=8 /TID=Rn.37510.1 /TIER=FL /STK=2 /UG=Rn.37510 /LL=25701 /DEF=Rattus norvegicus Max interacting protein 1 (Mxi1), mRNA. /PROD=max interacting protein 1 /FL=gb:AF003008.1 gb:NM_013160.1 NM_013160 Max interactor 1-like /// MAX interactor 1 LOC100360898 /// Mxi1 100360898 /// 25701 NM_013160 /// XM_002728898 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // traceable author statement /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1368964_at NM_030856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030856.1 /DB_XREF=gi:13540674 /GEN=Lrrn3 /FEA=FLmRNA /CNT=7 /TID=Rn.39124.1 /TIER=FL /STK=2 /UG=Rn.39124 /LL=81514 /DEF=Rattus norvegicus neuronal leucine-rich repeat protein-3 (Lrrn3), mRNA. /PROD=neuronal leucine-rich repeat protein-3 /FL=gb:NM_030856.1 gb:AF291437.1 NM_030856 leucine rich repeat neuronal 3 Lrrn3 81514 NM_030856 0001934 // positive regulation of protein phosphorylation // inferred from direct assay 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from direct assay 0032403 // protein complex binding // inferred from direct assay 1368965_at NM_030834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030834.1 /DB_XREF=gi:13540631 /GEN=Mct3 /FEA=FLmRNA /CNT=7 /TID=Rn.10826.1 /TIER=FL /STK=2 /UG=Rn.10826 /LL=80878 /DEF=Rattus norvegicus monocarboxylate transporter (Mct3), mRNA. /PROD=monocarboxylate transporter /FL=gb:U87627.1 gb:NM_030834.1 NM_030834 solute carrier family 16, member 3 (monocarboxylic acid transporter 4) Slc16a3 80878 NM_030834 0006810 // transport // inferred from electronic annotation /// 0015711 // organic anion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0015293 // symporter activity // inferred from electronic annotation /// 0015355 // secondary active monocarboxylate transmembrane transporter activity // inferred from electronic annotation 1368966_at NM_031813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031813.1 /DB_XREF=gi:13929155 /GEN=Mybph /FEA=FLmRNA /CNT=7 /TID=Rn.15019.1 /TIER=FL /STK=2 /UG=Rn.15019 /LL=83708 /DEF=Rattus norvegicus norvegicus myosin binding protein H (Mybph), mRNA. /PROD=norvegicus myosin binding protein H /FL=gb:NM_031813.1 gb:AF077338.1 NM_031813 myosin binding protein H Mybph 83708 NM_031813 0007155 // cell adhesion // inferred from electronic annotation 0032982 // myosin filament // inferred from electronic annotation 1368967_at NM_133609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133609.1 /DB_XREF=gi:19424321 /GEN=Eif2b3 /FEA=FLmRNA /CNT=7 /TID=Rn.10577.1 /TIER=FL /STK=2 /UG=Rn.10577 /LL=171145 /DEF=Rattus norvegicus eukaryotic translation initiation factor 2B, subunit 3 (gamma, 58kD) (Eif2b3), mRNA. /PROD=eukaryotic translation initiation factor 2B,subunit 3 (gamma, 58kD) /FL=gb:NM_133609.1 gb:U38253.1 NM_133609 eukaryotic translation initiation factor 2B, subunit 3 gamma Eif2b3 171145 NM_133609 0006412 // translation // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // not recorded /// 0006413 // translational initiation // inferred from sequence or structural similarity /// 0006417 // regulation of translation // inferred from mutant phenotype /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009408 // response to heat // inferred from direct assay /// 0009749 // response to glucose stimulus // inferred from direct assay /// 0014003 // oligodendrocyte development // not recorded /// 0014003 // oligodendrocyte development // inferred from sequence or structural similarity /// 0032057 // negative regulation of translational initiation in response to stress // inferred from mutant phenotype /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0051716 // cellular response to stimulus // not recorded /// 0051716 // cellular response to stimulus // inferred from sequence or structural similarity 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from direct assay /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from physical interaction /// 0005851 // eukaryotic translation initiation factor 2B complex // not recorded /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from sequence or structural similarity 0003743 // translation initiation factor activity // not recorded /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from genetic interaction /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008135 // translation factor activity, nucleic acid binding // not recorded /// 0008135 // translation factor activity, nucleic acid binding // inferred from sequence or structural similarity /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1368968_at NM_012910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012910.1 /DB_XREF=gi:6978536 /GEN=Arrb1 /FEA=FLmRNA /CNT=7 /TID=Rn.34876.1 /TIER=FL /STK=2 /UG=Rn.34876 /LL=25387 /DEF=Rattus norvegicus Arrestin, beta 1 (Arrb1), mRNA. /PROD=arrestin, beta 1 /FL=gb:NM_012910.1 gb:M91589.1 NM_012910 arrestin, beta 1 Arrb1 25387 NM_012910 0000187 // activation of MAPK activity // inferred from direct assay /// 0002031 // G-protein coupled receptor internalization // not recorded /// 0002032 // desensitization of G-protein coupled receptor protein signaling pathway by arrestin // traceable author statement /// 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0006897 // endocytosis // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // traceable author statement /// 0007600 // sensory perception // inferred from electronic annotation /// 0007602 // phototransduction // not recorded /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // not recorded /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // traceable author statement /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0019233 // sensory perception of pain // traceable author statement /// 0030817 // regulation of cAMP biosynthetic process // traceable author statement /// 0030820 // regulation of cAMP catabolic process // traceable author statement /// 0031397 // negative regulation of protein ubiquitination // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0032715 // negative regulation of interleukin-6 production // not recorded /// 0032717 // negative regulation of interleukin-8 production // not recorded /// 0035025 // positive regulation of Rho protein signal transduction // not recorded /// 0035066 // positive regulation of histone acetylation // not recorded /// 0042699 // follicle-stimulating hormone signaling pathway // inferred from direct assay /// 0043149 // stress fiber assembly // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043967 // histone H4 acetylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0050975 // sensory perception of touch // traceable author statement /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded 0000785 // chromatin // not recorded /// 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0031143 // pseudopodium // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from direct assay 0001664 // G-protein-coupled receptor binding // traceable author statement /// 0004402 // histone acetyltransferase activity // not recorded /// 0005096 // GTPase activator activity // not recorded /// 0005159 // insulin-like growth factor receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0010843 // promoter binding // not recorded /// 0030276 // clathrin binding // traceable author statement /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0031701 // angiotensin receptor binding // not recorded /// 0031762 // follicle-stimulating hormone receptor binding // inferred from physical interaction /// 0051219 // phosphoprotein binding // inferred from physical interaction 1368969_at NM_030584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030584.1 /DB_XREF=gi:13399333 /GEN=Sost /FEA=FLmRNA /CNT=7 /TID=Rn.38761.1 /TIER=FL /STK=2 /UG=Rn.38761 /LL=80722 /DEF=Rattus norvegicus sclerostin (Sost), mRNA. /PROD=sclerostin /FL=gb:AF326741.1 gb:NM_030584.1 NM_030584 sclerosteosis Sost 80722 NM_030584 0001503 // ossification // inferred from expression pattern /// 0001503 // ossification // not recorded /// 0001503 // ossification // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0031012 // extracellular matrix // not recorded 0005515 // protein binding // inferred from direct assay /// 0008201 // heparin binding // inferred from electronic annotation 1368970_at NM_053644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053644.1 /DB_XREF=gi:17865344 /GEN=Cdh23 /FEA=FLmRNA /CNT=6 /TID=Rn.61102.1 /TIER=FL /STK=2 /UG=Rn.61102 /LL=114102 /DEF=Rattus norvegicus cadherin related 23 (Cdh23), mRNA. /PROD=cadherin related 23 /FL=gb:AB053447.1 gb:NM_053644.1 NM_053644 cadherin 23 (otocadherin) Cdh23 114102 NM_053644 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008344 // adult locomotory behavior // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0042491 // auditory receptor cell differentiation // not recorded /// 0045494 // photoreceptor cell maintenance // not recorded /// 0048563 // post-embryonic organ morphogenesis // not recorded /// 0048839 // inner ear development // not recorded /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // traceable author statement /// 0050953 // sensory perception of light stimulus // not recorded /// 0050957 // equilibrioception // not recorded /// 0060013 // righting reflex // not recorded /// 0060088 // auditory receptor cell stereocilium organization // not recorded 0001917 // photoreceptor inner segment // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005929 // cilium // not recorded /// 0005932 // microtubule basal body // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032420 // stereocilium // not recorded /// 0032426 // stereocilium bundle tip // not recorded /// 0045202 // synapse // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1368971_a_at AY034051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY034051.1 /DB_XREF=gi:16647985 /FEA=FLmRNA /CNT=1 /TID=Rn.10868.2 /TIER=FL /STK=1 /UG=Rn.10868 /LL=84018 /UG_GENE=Synj2 /DEF=Rattus norvegicus synaptojanin 2B2 mRNA, complete cds, alternatively spliced. /PROD=synaptojanin 2B2 /FL=gb:AY034051.1 AY034051 synaptojanin 2 Synj2 84018 NM_001113371 /// NM_001113372 /// NM_032071 0007420 // brain development // inferred from expression pattern /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // not recorded /// 0046855 // inositol phosphate dephosphorylation // inferred from direct assay /// 0046856 // phosphoinositide dephosphorylation // inferred from mutant phenotype /// 0048312 // intracellular distribution of mitochondria // inferred from direct assay 0005626 // insoluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005879 // axonemal microtubule // inferred from direct assay /// 0005881 // cytoplasmic microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031315 // extrinsic to mitochondrial outer membrane // inferred from direct assay /// 0032587 // ruffle membrane // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay /// 0045202 // synapse // traceable author statement /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from mutant phenotype /// 0004439 // phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity // inferred from electronic annotation /// 0004439 // phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity // not recorded /// 0004445 // inositol-polyphosphate 5-phosphatase activity // inferred from direct assay /// 0004445 // inositol-polyphosphate 5-phosphatase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from physical interaction /// 0030165 // PDZ domain binding // inferred from physical interaction 1368972_at NM_012731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012731.1 /DB_XREF=gi:6981293 /GEN=Ntrk2 /FEA=FLmRNA /CNT=6 /TID=Rn.11246.1 /TIER=FL /STK=2 /UG=Rn.11246 /LL=25054 /DEF=Rattus norvegicus Neural receptor protein-tyrosine kinase (trkB) (Ntrk2), mRNA. /PROD=neural receptor protein-tyrosine kinase (trkB) /FL=gb:M55291.1 gb:NM_012731.1 NM_012731 neurotrophic tyrosine kinase, receptor, type 2 Ntrk2 25054 NM_001163168 /// NM_001163169 /// NM_012731 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007190 // activation of adenylate cyclase activity // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007631 // feeding behavior // inferred from electronic annotation /// 0007631 // feeding behavior // not recorded /// 0014047 // glutamate secretion // inferred from electronic annotation /// 0014047 // glutamate secretion // not recorded /// 0019222 // regulation of metabolic process // inferred from electronic annotation /// 0019222 // regulation of metabolic process // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031547 // brain-derived neurotrophic factor receptor signaling pathway // inferred from mutant phenotype /// 0042490 // mechanoreceptor differentiation // inferred from electronic annotation /// 0042490 // mechanoreceptor differentiation // not recorded /// 0046548 // retinal rod cell development // inferred from electronic annotation /// 0046548 // retinal rod cell development // not recorded /// 0046777 // protein autophosphorylation // inferred from mutant phenotype /// 0046928 // regulation of neurotransmitter secretion // inferred from direct assay /// 0050773 // regulation of dendrite development // inferred from mutant phenotype /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype 0000139 // Golgi membrane // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from electronic annotation /// 0043195 // terminal button // not recorded /// 0043197 // dendritic spine // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay /// 0048786 // presynaptic active zone // inferred from direct assay /// 0060076 // excitatory synapse // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from mutant phenotype /// 0004872 // receptor activity // inferred from electronic annotation /// 0005030 // neurotrophin receptor activity // inferred from direct assay /// 0005030 // neurotrophin receptor activity // inferred from electronic annotation /// 0005030 // neurotrophin receptor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0048403 // brain-derived neurotrophic factor binding // inferred from direct assay /// 0048403 // brain-derived neurotrophic factor binding // inferred from mutant phenotype 1368973_at NM_031006 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031006.1 /DB_XREF=gi:13591903 /GEN=Adar /FEA=FLmRNA /CNT=6 /TID=Rn.10056.1 /TIER=FL /STK=2 /UG=Rn.10056 /LL=81635 /DEF=Rattus norvegicus adenosine deaminase RNA-specific (Adar), mRNA. /PROD=adenosine deaminase RNA-specific /FL=gb:U18942.1 gb:NM_031006.1 NM_031006 adenosine deaminase, RNA-specific Adar 81635 NM_031006 0006350 // transcription // inferred from electronic annotation /// 0006382 // adenosine to inosine editing // traceable author statement /// 0006396 // RNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0016553 // base conversion or substitution editing // not recorded /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from mutant phenotype /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0003726 // double-stranded RNA adenosine deaminase activity // inferred from direct assay /// 0003726 // double-stranded RNA adenosine deaminase activity // not recorded /// 0003726 // double-stranded RNA adenosine deaminase activity // inferred from electronic annotation /// 0004000 // adenosine deaminase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368974_at NM_023956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023956.1 /DB_XREF=gi:13027399 /GEN=Gucy1a2 /FEA=FLmRNA /CNT=6 /TID=Rn.62358.1 /TIER=FL /STK=2 /UG=Rn.62358 /LL=66012 /DEF=Rattus norvegicus soluble guanylyl cyclase alpha2 subunit (Gucy1a2), mRNA. /PROD=soluble guanylyl cyclase alpha2 subunit /FL=gb:NM_023956.1 gb:AF109963.2 NM_023956 guanylate cyclase 1, soluble, alpha 2 Gucy1a2 66012 NM_023956 0006182 // cGMP biosynthetic process // inferred from electronic annotation /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030828 // positive regulation of cGMP biosynthetic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // inferred from direct assay /// 0004383 // guanylate cyclase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // non-traceable author statement 1368975_at NM_013127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013127.1 /DB_XREF=gi:6978628 /GEN=Cd38 /FEA=FLmRNA /CNT=6 /TID=Rn.11414.1 /TIER=FL /STK=2 /UG=Rn.11414 /LL=25668 /DEF=Rattus norvegicus CD38 antigen (ADP-ribosyl cyclase cyclic ADP-ribose hydrolase) (Cd38), mRNA. /PROD=CD38 antigen (ADP-ribosyl cyclase cyclicADP-ribose hydrolase) /FL=gb:D29646.1 gb:D30795.1 gb:NM_013127.1 NM_013127 CD38 molecule Cd38 25668 NM_013127 0001666 // response to hypoxia // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0007565 // female pregnancy // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from direct assay /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // not recorded /// 0032024 // positive regulation of insulin secretion // inferred from mutant phenotype /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0033194 // response to hydroperoxide // inferred from direct assay /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0045779 // negative regulation of bone resorption // inferred from direct assay /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype /// 0060292 // long term synaptic depression // inferred from mutant phenotype /// 0070555 // response to interleukin-1 // inferred from expression pattern 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003953 // NAD+ nucleosidase activity // inferred from direct assay /// 0003953 // NAD+ nucleosidase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // not recorded /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // not recorded 1368976_at D30795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D30795.1 /DB_XREF=gi:533351 /FEA=FLmRNA /CNT=6 /TID=Rn.11414.1 /TIER=FL /STK=1 /UG=Rn.11414 /LL=25668 /UG_GENE=Cd38 /DEF=Rat mRNA for CD38-homologous protein, complete cds. /PROD=CD38-homologous protein /FL=gb:D29646.1 gb:D30795.1 gb:NM_013127.1 D30795 CD38 molecule Cd38 25668 NM_013127 0001666 // response to hypoxia // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0007565 // female pregnancy // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from direct assay /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // not recorded /// 0032024 // positive regulation of insulin secretion // inferred from mutant phenotype /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0033194 // response to hydroperoxide // inferred from direct assay /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0045779 // negative regulation of bone resorption // inferred from direct assay /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype /// 0060292 // long term synaptic depression // inferred from mutant phenotype /// 0070555 // response to interleukin-1 // inferred from expression pattern 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003953 // NAD+ nucleosidase activity // inferred from direct assay /// 0003953 // NAD+ nucleosidase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // not recorded /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // not recorded 1368977_a_at AF061242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF061242.1 /DB_XREF=gi:3523147 /GEN=FxC1 /FEA=FLmRNA /CNT=13 /TID=Rn.13451.2 /TIER=FL+Stack /STK=13 /UG=Rn.13451 /LL=84384 /DEF=Rattus norvegicus fracture callus 1 (FxC1) mRNA, complete cds. /PROD=fracture callus 1 /FL=gb:AF061242.1 AF061242 fractured callus expressed transcript 1 Fxc1 84384 NM_053371 0006626 // protein targeting to mitochondrion // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0045039 // protein import into mitochondrial inner membrane // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0042719 // mitochondrial intermembrane space protein transporter complex // inferred from electronic annotation 0046872 // metal ion binding // inferred from electronic annotation 1368978_at NM_033499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_033499.1 /DB_XREF=gi:15721934 /GEN=Scrg1 /FEA=FLmRNA /CNT=6 /TID=Rn.7724.1 /TIER=FL /STK=2 /UG=Rn.7724 /LL=64458 /DEF=Rattus norvegicus scrapie responsive protein 1 (Scrg1), mRNA. /PROD=scrapie responsive protein 1 /FL=gb:NM_033499.1 NM_033499 stimulator of chondrogenesis 1 Scrg1 64458 NM_033499 0005576 // extracellular region // inferred from electronic annotation 1368979_at NM_032062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032062.1 /DB_XREF=gi:14091743 /GEN=Hapip /FEA=FLmRNA /CNT=10 /TID=Rn.10709.1 /TIER=FL /STK=2 /UG=Rn.10709 /LL=84009 /DEF=Rattus norvegicus huntingtin-associated protein interacting protein (duo) (Hapip), mRNA. /PROD=huntingtin-associated protein interactingprotein (duo) /FL=gb:NM_032062.1 gb:AF232669.1 NM_032062 kalirin, RhoGEF kinase Kalrn 84009 NM_032062 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007399 // nervous system development // inferred from direct assay /// 0007409 // axonogenesis // inferred from direct assay /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0016192 // vesicle-mediated transport // inferred from direct assay /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0050773 // regulation of dendrite development // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // traceable author statement /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368980_at NM_053758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053758.1 /DB_XREF=gi:16758593 /GEN=Plce /FEA=FLmRNA /CNT=10 /TID=Rn.64650.1 /TIER=FL /STK=2 /UG=Rn.64650 /LL=114633 /DEF=Rattus norvegicus phospholipase C, epsilon (Plce), mRNA. /PROD=phospholipase C, epsilon /FL=gb:AF323615.1 gb:NM_053758.1 NM_053758 phospholipase C, epsilon 1 Plce1 114633 NM_053758 0000187 // activation of MAPK activity // not recorded /// 0000187 // activation of MAPK activity // inferred from sequence or structural similarity /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // not recorded /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from sequence or structural similarity /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // inferred from direct assay /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // not recorded /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from sequence or structural similarity /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0032835 // glomerulus development // not recorded /// 0045859 // regulation of protein kinase activity // not recorded /// 0045859 // regulation of protein kinase activity // inferred from sequence or structural similarity /// 0046578 // regulation of Ras protein signal transduction // not recorded /// 0046578 // regulation of Ras protein signal transduction // inferred from sequence or structural similarity 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004435 // phosphoinositide phospholipase C activity // inferred from direct assay /// 0004435 // phosphoinositide phospholipase C activity // inferred from electronic annotation /// 0004435 // phosphoinositide phospholipase C activity // not recorded /// 0004435 // phosphoinositide phospholipase C activity // inferred from sequence or structural similarity /// 0004629 // phospholipase C activity // not recorded /// 0004629 // phospholipase C activity // inferred from sequence or structural similarity /// 0004629 // phospholipase C activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017016 // Ras GTPase binding // inferred from direct assay /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from sequence or structural similarity 1368981_at U14007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U14007.1 /DB_XREF=gi:595787 /GEN=AQP4 /FEA=FLmRNA /CNT=10 /TID=Rn.10020.1 /TIER=FL /STK=1 /UG=Rn.10020 /LL=25293 /DEF=Rattus norvegicus aquaporin-4 water channel (AQP4) mRNA, complete cds. /PROD=aquaporin-4 water channel /FL=gb:AF144082.1 gb:U14007.1 gb:NM_012825.1 gb:L27588.1 U14007 aquaporin 4 Aqp4 25293 NM_001142366 /// NM_012825 0006810 // transport // inferred from electronic annotation /// 0006833 // water transport // inferred from direct assay /// 0006833 // water transport // not recorded /// 0006833 // water transport // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0015670 // carbon dioxide transport // inferred from direct assay /// 0030104 // water homeostasis // not recorded /// 0030104 // water homeostasis // inferred from electronic annotation /// 0042538 // hyperosmotic salinity response // inferred from expression pattern /// 0050891 // multicellular organismal water homeostasis // not recorded /// 0050891 // multicellular organismal water homeostasis // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055085 // transmembrane transport // not recorded /// 0070295 // renal water absorption // not recorded /// 0070295 // renal water absorption // inferred from electronic annotation /// 0071346 // cellular response to interferon-gamma // not recorded /// 0071346 // cellular response to interferon-gamma // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0005911 // cell-cell junction // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0015250 // water channel activity // inferred from direct assay /// 0015250 // water channel activity // not recorded /// 0015250 // water channel activity // inferred from electronic annotation /// 0015288 // porin activity // inferred from direct assay 1368982_at NM_053772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053772.1 /DB_XREF=gi:16758609 /GEN=Pkia /FEA=FLmRNA /CNT=10 /TID=Rn.37613.1 /TIER=FL /STK=2 /UG=Rn.37613 /LL=114906 /DEF=Rattus norvegicus protein kinase inhibitor, alpha (Pkia), mRNA. /PROD=protein kinase inhibitor, alpha /FL=gb:L02615.1 gb:NM_053772.1 NM_053772 protein kinase (cAMP-dependent, catalytic) inhibitor alpha Pkia 114906 NM_053772 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006469 // negative regulation of protein kinase activity // traceable author statement /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0010389 // regulation of G2/M transition of mitotic cell cycle // inferred from electronic annotation /// 0010389 // regulation of G2/M transition of mitotic cell cycle // not recorded /// 0042308 // negative regulation of protein import into nucleus // inferred from electronic annotation /// 0042308 // negative regulation of protein import into nucleus // not recorded /// 0042326 // negative regulation of phosphorylation // not recorded /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // not recorded 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0004862 // cAMP-dependent protein kinase inhibitor activity // inferred from electronic annotation /// 0004862 // cAMP-dependent protein kinase inhibitor activity // not recorded 1368983_at NM_012945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012945.1 /DB_XREF=gi:6978784 /GEN=Dtr /FEA=FLmRNA /CNT=10 /TID=Rn.10148.1 /TIER=FL /STK=2 /UG=Rn.10148 /LL=25433 /DEF=Rattus norvegicus Diphtheria toxin receptor (heparin binding epidermal growth factor - like growth factor) (Dtr), mRNA. /PROD=diphtheria toxin receptor (heparin bindingepidermal growth factor - like growth factor) /FL=gb:L05489.1 gb:NM_012945.1 NM_012945 heparin-binding EGF-like growth factor Hbegf 25433 NM_012945 0007173 // epidermal growth factor receptor signaling pathway // inferred from mutant phenotype /// 0007173 // epidermal growth factor receptor signaling pathway // not recorded /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from electronic annotation /// 0007399 // nervous system development // traceable author statement /// 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0008016 // regulation of heart contraction // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0030307 // positive regulation of cell growth // inferred from direct assay /// 0030335 // positive regulation of cell migration // not recorded /// 0035313 // wound healing, spreading of epidermal cells // inferred from electronic annotation /// 0035313 // wound healing, spreading of epidermal cells // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // not recorded /// 0051545 // negative regulation of elastin biosynthetic process // inferred from direct assay /// 0051549 // positive regulation of keratinocyte migration // inferred from electronic annotation /// 0051549 // positive regulation of keratinocyte migration // not recorded /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded /// 0090303 // positive regulation of wound healing // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005154 // epidermal growth factor receptor binding // inferred from mutant phenotype /// 0005154 // epidermal growth factor receptor binding // not recorded /// 0005154 // epidermal growth factor receptor binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from mutant phenotype /// 0008083 // growth factor activity // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded 1368984_at NM_057148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057148.1 /DB_XREF=gi:16924009 /GEN=Sept2 /FEA=FLmRNA /CNT=10 /TID=Rn.65187.1 /TIER=FL /STK=2 /UG=Rn.65187 /LL=117515 /DEF=Rattus norvegicus septin 2 (Sept2), mRNA. /PROD=septin 2 /FL=gb:NM_057148.1 gb:AB027561.1 NM_057148 septin 2 Sept2 117515 NM_057148 0002036 // regulation of L-glutamate transport // inferred from electronic annotation /// 0002036 // regulation of L-glutamate transport // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0032880 // regulation of protein localization // inferred from electronic annotation /// 0032880 // regulation of protein localization // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0051301 // cell division // inferred from electronic annotation 0000145 // exocyst // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0019717 // synaptosome // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0031105 // septin complex // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0042995 // cell projection // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0030234 // enzyme regulator activity // inferred from electronic annotation /// 0030234 // enzyme regulator activity // not recorded /// 0032947 // protein complex scaffold // inferred from electronic annotation /// 0032947 // protein complex scaffold // not recorded 1368985_at NM_012573 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012573.1 /DB_XREF=gi:6980981 /GEN=Grin2a /FEA=FLmRNA /CNT=9 /TID=Rn.9710.1 /TIER=FL /STK=2 /UG=Rn.9710 /LL=24409 /DEF=Rattus norvegicus Glutamate receptor, ionotropic, N-methyl D-aspartate 2A (Grin2a), mRNA. /PROD=glutamate receptor, ionotropic, N-methylD-aspartate 2A /FL=gb:M91561.1 gb:NM_012573.1 gb:AF001423.1 NM_012573 glutamate receptor, ionotropic, N-methyl D-aspartate 2A Grin2a 24409 NM_012573 0001508 // regulation of action potential // inferred from mutant phenotype /// 0001964 // startle response // inferred from electronic annotation /// 0001964 // startle response // not recorded /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0001975 // response to amphetamine // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0007165 // signal transduction // not recorded /// 0007268 // synaptic transmission // inferred from mutant phenotype /// 0007268 // synaptic transmission // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007611 // learning or memory // not recorded /// 0007611 // learning or memory // inferred from electronic annotation /// 0007612 // learning // inferred from electronic annotation /// 0007612 // learning // not recorded /// 0007613 // memory // inferred from direct assay /// 0007613 // memory // not recorded /// 0007613 // memory // inferred from electronic annotation /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0008542 // visual learning // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0009416 // response to light stimulus // inferred from expression pattern /// 0009611 // response to wounding // inferred from electronic annotation /// 0009611 // response to wounding // not recorded /// 0009743 // response to carbohydrate stimulus // inferred from expression pattern /// 0010042 // response to manganese ion // inferred from expression pattern /// 0010942 // positive regulation of cell death // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014075 // response to amine stimulus // inferred from expression pattern /// 0019233 // sensory perception of pain // not recorded /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0021510 // spinal cord development // inferred from expression pattern /// 0021766 // hippocampus development // inferred from expression pattern /// 0021987 // cerebral cortex development // inferred from expression pattern /// 0022008 // neurogenesis // inferred from electronic annotation /// 0022008 // neurogenesis // not recorded /// 0030431 // sleep // inferred from electronic annotation /// 0030431 // sleep // not recorded /// 0033058 // directional locomotion // inferred from electronic annotation /// 0033058 // directional locomotion // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from direct assay /// 0040011 // locomotion // not recorded /// 0040011 // locomotion // inferred from electronic annotation /// 0042177 // negative regulation of protein catabolic process // inferred from electronic annotation /// 0042177 // negative regulation of protein catabolic process // not recorded /// 0042220 // response to cocaine // inferred from expression pattern /// 0042391 // regulation of membrane potential // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042417 // dopamine metabolic process // inferred from electronic annotation /// 0042417 // dopamine metabolic process // not recorded /// 0042428 // serotonin metabolic process // inferred from electronic annotation /// 0042428 // serotonin metabolic process // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0045471 // response to ethanol // not recorded /// 0045471 // response to ethanol // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // not recorded /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from mutant phenotype /// 0048511 // rhythmic process // inferred from direct assay /// 0050804 // regulation of synaptic transmission // not recorded /// 0050804 // regulation of synaptic transmission // inferred from electronic annotation /// 0050966 // detection of mechanical stimulus involved in sensory perception of pain // not recorded /// 0051592 // response to calcium ion // inferred from expression pattern /// 0051597 // response to methylmercury // inferred from expression pattern /// 0051707 // response to other organism // inferred from expression pattern /// 0051930 // regulation of sensory perception of pain // inferred from electronic annotation /// 0051930 // regulation of sensory perception of pain // not recorded /// 0060078 // regulation of postsynaptic membrane potential // not recorded /// 0060078 // regulation of postsynaptic membrane potential // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from mutant phenotype /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060359 // response to ammonium ion // inferred from expression pattern /// 0060992 // response to fungicide // inferred from expression pattern /// 0070588 // calcium ion transmembrane transport // not recorded /// 0071230 // cellular response to amino acid stimulus // inferred from mutant phenotype /// 0071286 // cellular response to magnesium ion // inferred from expression pattern /// 0071287 // cellular response to manganese ion // inferred from expression pattern /// 0071294 // cellular response to zinc ion // inferred from mutant phenotype /// 0071359 // cellular response to dsRNA // inferred from expression pattern /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern /// 0071396 // cellular response to lipid // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from mutant phenotype 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // not recorded /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016600 // flotillin complex // inferred from physical interaction /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // inferred from direct assay /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // not recorded /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030288 // outer membrane-bounded periplasmic space // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0042734 // presynaptic membrane // not recorded /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0045202 // synapse // not recorded /// 0045202 // synapse // traceable author statement /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0045211 // postsynaptic membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from direct assay /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from mutant phenotype /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from direct assay /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from mutant phenotype /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // not recorded /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from mutant phenotype /// 0005261 // cation channel activity // inferred from direct assay /// 0005261 // cation channel activity // not recorded /// 0005261 // cation channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0016595 // glutamate binding // inferred from mutant phenotype /// 0019901 // protein kinase binding // inferred from physical interaction /// 0022843 // voltage-gated cation channel activity // inferred from mutant phenotype /// 0032403 // protein complex binding // inferred from physical interaction /// 0035254 // glutamate receptor binding // inferred from physical interaction /// 0042165 // neurotransmitter binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050839 // cell adhesion molecule binding // inferred from physical interaction /// 0051117 // ATPase binding // inferred from physical interaction 1368986_at NM_053859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053859.1 /DB_XREF=gi:16758725 /GEN=Slc17a7 /FEA=FLmRNA /CNT=9 /TID=Rn.10267.1 /TIER=FL /STK=2 /UG=Rn.10267 /LL=116638 /DEF=Rattus norvegicus solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 (Slc17a7), mRNA. /PROD=solute carrier family 17 (sodium-dependentinorganic phosphate cotransporter), member 7 /FL=gb:NM_053859.1 gb:U07609.1 NM_053859 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 Slc17a7 116638 NM_053859 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006817 // phosphate transport // inferred from direct assay /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0042137 // sequestering of neurotransmitter // inferred from electronic annotation /// 0042137 // sequestering of neurotransmitter // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0008021 // synaptic vesicle // inferred from electronic annotation /// 0008021 // synaptic vesicle // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0048786 // presynaptic active zone // not recorded /// 0060076 // excitatory synapse // inferred from electronic annotation /// 0060076 // excitatory synapse // not recorded 0005315 // inorganic phosphate transmembrane transporter activity // inferred from direct assay /// 0015293 // symporter activity // inferred from electronic annotation /// 0015319 // sodium:inorganic phosphate symporter activity // inferred from electronic annotation /// 0015319 // sodium:inorganic phosphate symporter activity // not recorded /// 0015321 // sodium-dependent phosphate transmembrane transporter activity // inferred from direct assay 1368987_at BF567766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567766 /DB_XREF=gi:11677490 /DB_XREF=UI-R-BO0-ahl-a-03-0-UI.r1 /CLONE=UI-R-BO0-ahl-a-03-0-UI /FEA=FLmRNA /CNT=9 /TID=Rn.10267.1 /TIER=ConsEnd /STK=0 /UG=Rn.10267 /LL=116638 /UG_GENE=Slc17a7 /UG_TITLE=solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 /FL=gb:NM_053859.1 gb:U07609.1 BF567766 1368988_at AW520914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520914 /DB_XREF=gi:7163292 /DB_XREF=UI-R-BJ0p-age-h-07-0-UI.s1 /CLONE=UI-R-BJ0p-age-h-07-0-UI /FEA=FLmRNA /CNT=9 /TID=Rn.10111.1 /TIER=ConsEnd /STK=4 /UG=Rn.10111 /LL=29209 /UG_GENE=Casq2 /UG_TITLE=calsequestrin 2 /FL=gb:NM_017131.1 gb:U33287.1 AW520914 calsequestrin 2 (cardiac muscle) Casq2 29209 NM_017131 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0033018 // sarcoplasmic reticulum lumen // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1368989_at NM_012886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012886.1 /DB_XREF=gi:6981655 /GEN=Timp3 /FEA=FLmRNA /CNT=9 /TID=Rn.3467.1 /TIER=FL /STK=2 /UG=Rn.3467 /LL=25358 /DEF=Rattus norvegicus Tissue inhibitor of metalloproteinase 3 (Timp3), mRNA. /PROD=tissue inhibitor of metalloproteinase 3 /FL=gb:U27201.1 gb:NM_012886.1 NM_012886 TIMP metallopeptidase inhibitor 3 Timp3 25358 NM_012886 0006917 // induction of apoptosis // traceable author statement /// 0007417 // central nervous system development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0042246 // tissue regeneration // inferred from expression pattern /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045861 // negative regulation of proteolysis // inferred from mutant phenotype /// 0051045 // negative regulation of membrane protein ectodomain proteolysis // inferred from electronic annotation /// 0051045 // negative regulation of membrane protein ectodomain proteolysis // not recorded /// 0051593 // response to folic acid // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0031012 // extracellular matrix // not recorded 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008191 // metalloendopeptidase inhibitor activity // traceable author statement /// 0008191 // metalloendopeptidase inhibitor activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368990_at NM_012940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012940.1 /DB_XREF=gi:6978736 /GEN=Cyp1b1 /FEA=FLmRNA /CNT=8 /TID=Rn.10125.1 /TIER=FL /STK=2 /UG=Rn.10125 /LL=25426 /DEF=Rattus norvegicus Cytochrome P450 1b1 (Cyp1b1), mRNA. /PROD=cytochrome P450 1b1 /FL=gb:U09540.1 gb:NM_012940.1 NM_012940 cytochrome P450, family 1, subfamily b, polypeptide 1 Cyp1b1 25426 NM_012940 0006725 // cellular aromatic compound metabolic process // inferred from direct assay /// 0008210 // estrogen metabolic process // inferred from mutant phenotype /// 0009404 // toxin metabolic process // inferred from electronic annotation /// 0009404 // toxin metabolic process // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0018894 // dibenzo-p-dioxin metabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0019825 // oxygen binding // not recorded /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1368991_at NM_053605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053605.1 /DB_XREF=gi:16758393 /GEN=Smpd3 /FEA=FLmRNA /CNT=8 /TID=Rn.54555.1 /TIER=FL /STK=2 /UG=Rn.54555 /LL=94338 /DEF=Rattus norvegicus sphingomyelin phosphodiesterase 3, neutral (Smpd3), mRNA. /PROD=sphingomyelin phosphodiesterase 3, neutral /FL=gb:NM_053605.1 gb:AB000215.1 NM_053605 sphingomyelin phosphodiesterase 3, neutral Smpd3 94338 NM_053605 0006684 // sphingomyelin metabolic process // inferred from electronic annotation /// 0006684 // sphingomyelin metabolic process // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0030072 // peptide hormone secretion // inferred from electronic annotation /// 0030072 // peptide hormone secretion // not recorded 0000137 // Golgi cis cisterna // inferred from electronic annotation /// 0000137 // Golgi cis cisterna // not recorded /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004767 // sphingomyelin phosphodiesterase activity // inferred from electronic annotation /// 0004767 // sphingomyelin phosphodiesterase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1368992_a_at AI104005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104005 /DB_XREF=gi:3704891 /DB_XREF=EST213294 /CLONE=RHEBW15 /FEA=FLmRNA /CNT=31 /TID=Rn.54448.2 /TIER=Stack /STK=6 /UG=Rn.54448 /LL=29667 /UG_GENE=Sfrs5 /UG_TITLE=splicing factor, arginineserine-rich 5 (SRp40, HRS) /FL=gb:L13635.1 AI104005 splicing factor, arginine/serine-rich 5 Sfrs5 29667 NM_001195505 /// NM_001195506 /// NM_019257 0006350 // transcription // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0009611 // response to wounding // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0050733 // RS domain binding // inferred from electronic annotation /// 0050733 // RS domain binding // not recorded 1368993_at NM_020088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020088.1 /DB_XREF=gi:9910319 /GEN=LOC56762 /FEA=FLmRNA /CNT=7 /TID=Rn.53894.1 /TIER=FL /STK=2 /UG=Rn.53894 /LL=56762 /DEF=Rattus norvegicus neurestin alpha (LOC56762), mRNA. /PROD=neurestin alpha /FL=gb:AF086607.1 gb:NM_020088.1 NM_020088 odz, odd Oz/ten-m homolog 2 (Drosophila) Odz2 117242 NM_020088 0007165 // signal transduction // inferred from electronic annotation /// 0007417 // central nervous system development // traceable author statement 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004180 // carboxypeptidase activity // inferred from electronic annotation 1368994_a_at AF041107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF041107.1 /DB_XREF=gi:2792495 /FEA=FLmRNA /CNT=1 /TID=Rn.10887.2 /TIER=FL /STK=1 /UG=Rn.10887 /LL=56785 /UG_GENE=LOC56785 /DEF=Rattus norvegicus tulip 2 mRNA, complete cds. /PROD=tulip 2 /FL=gb:AF041107.1 AF041107 GTPase activating Rap/RanGAP domain-like 1 Garnl1 56785 NM_020083 /// XM_001079197 /// XM_578542 0032859 // activation of Ral GTPase activity // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // not recorded /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017123 // Ral GTPase activator activity // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // not recorded 1368995_at AF041107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF041107.1 /DB_XREF=gi:2792495 /FEA=FLmRNA /CNT=1 /TID=Rn.10887.2 /TIER=FL /STK=1 /UG=Rn.10887 /LL=56785 /UG_GENE=LOC56785 /DEF=Rattus norvegicus tulip 2 mRNA, complete cds. /PROD=tulip 2 /FL=gb:AF041107.1 AF041107 GTPase activating Rap/RanGAP domain-like 1 Garnl1 56785 NM_020083 /// XM_001079197 /// XM_578542 0032859 // activation of Ral GTPase activity // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // not recorded /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017123 // Ral GTPase activator activity // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // not recorded 1368996_at NM_012702 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012702.1 /DB_XREF=gi:6978644 /GEN=Ceacam3 /FEA=FLmRNA /CNT=7 /TID=Rn.10064.1 /TIER=FL /STK=2 /UG=Rn.10064 /LL=24926 /DEF=Rattus norvegicus Carcinoembryonic antigen gene family (CGM1) (Ceacam3), mRNA. /PROD=carcinoembryonic antigen gene family (CGM1) /FL=gb:NM_012702.1 gb:M32474.1 NM_012702 carcinoembryonic antigen-related cell adhesion molecule 3 Ceacam3 24926 NM_012702 1368997_at NM_017103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017103.1 /DB_XREF=gi:8394424 /GEN=Tceb3 /FEA=FLmRNA /CNT=7 /TID=Rn.37427.1 /TIER=FL /STK=2 /UG=Rn.37427 /LL=25562 /DEF=Rattus norvegicus RNA polymerase II transcription factor elongin subunit A (110 kDa) (Tceb3), mRNA. /PROD=RNA polymerase II transcription factor elonginsubunit A (110 kDa) /FL=gb:NM_017103.1 gb:L46816.1 NM_017103 transcription elongation factor B (SIII), polypeptide 3 Tceb3 25562 NM_017103 0006350 // transcription // inferred from electronic annotation /// 0006354 // RNA elongation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006368 // RNA elongation from RNA polymerase II promoter // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0008023 // transcription elongation factor complex // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // traceable author statement /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016944 // RNA polymerase II transcription elongation factor activity // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation 1368998_at NM_031737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031737.1 /DB_XREF=gi:13929035 /GEN=Nkx6-1 /FEA=FLmRNA /CNT=7 /TID=Rn.11387.1 /TIER=FL /STK=2 /UG=Rn.11387 /LL=65193 /DEF=Rattus norvegicus NK6 transcription factor related, locus 1 (Drosophila) (Nkx6-1), mRNA. /PROD=Drosophila NK transcription factor related, genefamily 6, locus 1 /FL=gb:NM_031737.1 gb:AF004431.1 NM_031737 NK6 homeobox 1 Nkx6-1 65193 NM_031737 0003323 // pancreatic B cell development // inferred from expression pattern /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0021912 // regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification // inferred from electronic annotation /// 0021912 // regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification // not recorded /// 0021913 // regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification // inferred from electronic annotation /// 0021913 // regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification // not recorded /// 0022008 // neurogenesis // inferred from mutant phenotype /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031018 // endocrine pancreas development // inferred from electronic annotation /// 0031018 // endocrine pancreas development // not recorded /// 0032024 // positive regulation of insulin secretion // inferred from mutant phenotype /// 0032569 // gene-specific transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0035094 // response to nicotine // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045686 // negative regulation of glial cell differentiation // inferred from electronic annotation /// 0045686 // negative regulation of glial cell differentiation // not recorded /// 0045687 // positive regulation of glial cell differentiation // inferred from electronic annotation /// 0045687 // positive regulation of glial cell differentiation // not recorded /// 0048709 // oligodendrocyte differentiation // inferred from electronic annotation /// 0048709 // oligodendrocyte differentiation // not recorded /// 0071345 // cellular response to cytokine stimulus // inferred from expression pattern /// 0071375 // cellular response to peptide hormone stimulus // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0044424 // intracellular part // inferred from electronic annotation /// 0044424 // intracellular part // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1368999_a_at AF064869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF064869.1 /DB_XREF=gi:3719237 /FEA=FLmRNA /CNT=1 /TID=Rn.30036.2 /TIER=FL /STK=1 /UG=Rn.30036 /LL=79146 /UG_GENE=BEGAIN /DEF=Rattus norvegicus brain-enriched guanylate kinase-associated protein 1 mRNA, complete cds. /PROD=brain-enriched guanylate kinase-associatedprotein 1 /FL=gb:AF064869.1 AF064869 brain-enriched guanylate kinase-associated Begain 79146 NM_001111115 /// NM_024163 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // non-traceable author statement 1369000_at NM_021589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021589.1 /DB_XREF=gi:11024665 /GEN=Ntrk1 /FEA=FLmRNA /CNT=7 /TID=Rn.39098.1 /TIER=FL /STK=2 /UG=Rn.39098 /LL=59109 /DEF=Rattus norvegicus trk precursor (Ntrk1), mRNA. /PROD=trk precursor /FL=gb:NM_021589.1 gb:M85214.1 NM_021589 neurotrophic tyrosine kinase, receptor, type 1 Ntrk1 59109 NM_021589 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007190 // activation of adenylate cyclase activity // not recorded /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030183 // B cell differentiation // inferred from electronic annotation /// 0030183 // B cell differentiation // not recorded /// 0042490 // mechanoreceptor differentiation // inferred from electronic annotation /// 0042490 // mechanoreceptor differentiation // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded 0000139 // Golgi membrane // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005030 // neurotrophin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1369001_at NM_052805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_052805.1 /DB_XREF=gi:16258818 /GEN=Chrna3 /FEA=FLmRNA /CNT=7 /TID=Rn.10996.1 /TIER=FL /STK=2 /UG=Rn.10996 /LL=25101 /DEF=Rattus norvegicus Acetylcholine receptor alpha 3 (neuronal nicotine) (Chrna3), mRNA. /PROD=acetylcholine receptor alpha 3 (neuronalnicotine) /FL=gb:L31621.1 gb:NM_052805.1 NM_052805 cholinergic receptor, nicotinic, alpha 3 Chrna3 25101 NM_052805 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006937 // regulation of muscle contraction // not recorded /// 0006937 // regulation of muscle contraction // inferred from electronic annotation /// 0006940 // regulation of smooth muscle contraction // inferred from electronic annotation /// 0006940 // regulation of smooth muscle contraction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007171 // activation of transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0007171 // activation of transmembrane receptor protein tyrosine kinase activity // not recorded /// 0007271 // synaptic transmission, cholinergic // inferred from electronic annotation /// 0007271 // synaptic transmission, cholinergic // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007507 // heart development // inferred from expression pattern /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0014056 // regulation of acetylcholine secretion // inferred from electronic annotation /// 0014056 // regulation of acetylcholine secretion // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0035094 // response to nicotine // inferred from expression pattern /// 0035095 // behavioral response to nicotine // inferred from electronic annotation /// 0035095 // behavioral response to nicotine // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded /// 0042493 // response to drug // inferred from direct assay /// 0048814 // regulation of dendrite morphogenesis // inferred from electronic annotation /// 0048814 // regulation of dendrite morphogenesis // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded /// 0060084 // synaptic transmission involved in micturition // inferred from electronic annotation /// 0060084 // synaptic transmission involved in micturition // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from direct assay /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // not recorded /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // traceable author statement /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from mutant phenotype /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // not recorded /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0015464 // acetylcholine receptor activity // inferred from direct assay /// 0015464 // acetylcholine receptor activity // not recorded /// 0015464 // acetylcholine receptor activity // inferred from electronic annotation /// 0042166 // acetylcholine binding // inferred from direct assay 1369002_at NM_031118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031118.1 /DB_XREF=gi:13592086 /GEN=Soat1 /FEA=FLmRNA /CNT=7 /TID=Rn.59.1 /TIER=FL /STK=2 /UG=Rn.59 /LL=81782 /DEF=Rattus norvegicus acyl-coenzyme A:cholesterol acyltransferase (Soat1), mRNA. /PROD=acyl-coenzyme A:cholesterol acyltransferase /FL=gb:D86373.1 gb:NM_031118.1 NM_031118 sterol O-acyltransferase 1 Soat1 81782 NM_031118 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0008203 // cholesterol metabolic process // traceable author statement /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0010742 // macrophage derived foam cell differentiation // not recorded /// 0010878 // cholesterol storage // inferred from electronic annotation /// 0010878 // cholesterol storage // not recorded /// 0033344 // cholesterol efflux // inferred from electronic annotation /// 0033344 // cholesterol efflux // not recorded /// 0034379 // very-low-density lipoprotein particle assembly // inferred from electronic annotation /// 0034379 // very-low-density lipoprotein particle assembly // not recorded /// 0034435 // cholesterol esterification // inferred from electronic annotation /// 0034435 // cholesterol esterification // not recorded /// 0042986 // positive regulation of amyloid precursor protein biosynthetic process // inferred from electronic annotation /// 0042986 // positive regulation of amyloid precursor protein biosynthetic process // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // not recorded /// 0005792 // microsome // traceable author statement /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0000062 // acyl-CoA binding // inferred from electronic annotation /// 0000062 // acyl-CoA binding // not recorded /// 0004607 // phosphatidylcholine-sterol O-acyltransferase activity // inferred from expression pattern /// 0004772 // sterol O-acyltransferase activity // inferred from direct assay /// 0004772 // sterol O-acyltransferase activity // not recorded /// 0004772 // sterol O-acyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0015485 // cholesterol binding // inferred from electronic annotation /// 0015485 // cholesterol binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0034736 // cholesterol O-acyltransferase activity // inferred from electronic annotation /// 0034736 // cholesterol O-acyltransferase activity // not recorded /// 0034737 // ergosterol O-acyltransferase activity // inferred from electronic annotation /// 0034738 // lanosterol O-acyltransferase activity // inferred from electronic annotation 1369003_at NM_031800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031800.1 /DB_XREF=gi:13929133 /GEN=Dedd /FEA=FLmRNA /CNT=7 /TID=Rn.20907.1 /TIER=FL /STK=2 /UG=Rn.20907 /LL=83631 /DEF=Rattus norvegicus death effector domain-containing protein (Dedd), mRNA. /PROD=death effector domain-containing protein /FL=gb:NM_031800.1 gb:AF053362.1 NM_031800 death effector domain-containing Dedd 83631 NM_031800 0006350 // transcription // inferred from electronic annotation /// 0006915 // apoptosis // non-traceable author statement /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from sequence or structural similarity /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369004_at NM_133580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133580.1 /DB_XREF=gi:19424271 /GEN=Rab26 /FEA=FLmRNA /CNT=7 /TID=Rn.10975.1 /TIER=FL /STK=2 /UG=Rn.10975 /LL=171111 /DEF=Rattus norvegicus RAB26, member RAS oncogene family (Rab26), mRNA. /PROD=RAB26, member RAS oncogene family /FL=gb:U18771.1 gb:NM_133580.1 NM_133580 RAB26, member RAS oncogene family Rab26 171111 NM_133580 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // traceable author statement /// 0017157 // regulation of exocytosis // inferred from direct assay /// 0035272 // exocrine system development // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031226 // intrinsic to plasma membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // traceable author statement 1369005_at NM_031597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031597.2 /DB_XREF=gi:15826855 /GEN=Kcnq3 /FEA=FLmRNA /CNT=6 /TID=Rn.30019.1 /TIER=FL /STK=2 /UG=Rn.30019 /LL=29682 /DEF=Rattus norvegicus potassium voltage-gated channel, subfamily Q, member 3 (Kcnq3), mRNA. /PROD=potassium voltage-gated channel, subfamily Q,member 3 /FL=gb:NM_031597.2 gb:AF087454.2 NM_031597 potassium voltage-gated channel, KQT-like subfamily, member 3 Kcnq3 29682 NM_031597 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation 1369006_at NM_012735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012735.1 /DB_XREF=gi:7549764 /GEN=Hk2 /FEA=FLmRNA /CNT=6 /TID=Rn.22613.1 /TIER=FL /STK=2 /UG=Rn.22613 /LL=25059 /DEF=Rattus norvegicus Hexokinase 2 (Hk2), mRNA. /PROD=hexokinase 2 /FL=gb:NM_012735.1 gb:AF027179.1 gb:M68971.1 NM_012735 hexokinase 2 Hk2 25059 NM_012735 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006007 // glucose catabolic process // traceable author statement /// 0006096 // glycolysis // inferred from electronic annotation /// 0007595 // lactation // inferred from expression pattern /// 0046835 // carbohydrate phosphorylation // inferred from direct assay /// 0046835 // carbohydrate phosphorylation // not recorded /// 0046835 // carbohydrate phosphorylation // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004396 // hexokinase activity // inferred from direct assay /// 0004396 // hexokinase activity // not recorded /// 0004396 // hexokinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005536 // glucose binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1369007_at L08595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L08595.1 /DB_XREF=gi:310215 /GEN=RNR-1 /FEA=FLmRNA /CNT=6 /TID=Rn.9839.1 /TIER=FL /STK=2 /UG=Rn.9839 /LL=54278 /DEF=Rat nuclear receptor (RNR-1) mRNA, complete cds. /PROD=nuclear receptor /FL=gb:NM_019328.1 gb:U01146.1 gb:U72345.1 gb:L08595.1 L08595 nuclear receptor subfamily 4, group A, member 2 Nr4a2 54278 NM_019328 0001666 // response to hypoxia // not recorded /// 0001764 // neuron migration // not recorded /// 0001975 // response to amphetamine // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006950 // response to stress // not recorded /// 0007399 // nervous system development // not recorded /// 0008344 // adult locomotory behavior // not recorded /// 0009791 // post-embryonic development // not recorded /// 0010035 // response to inorganic substance // inferred from direct assay /// 0010467 // gene expression // not recorded /// 0016265 // death // not recorded /// 0017085 // response to insecticide // inferred from direct assay /// 0021952 // central nervous system projection neuron axonogenesis // not recorded /// 0021953 // central nervous system neuron differentiation // not recorded /// 0030182 // neuron differentiation // not recorded /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0031668 // cellular response to extracellular stimulus // not recorded /// 0042053 // regulation of dopamine metabolic process // not recorded /// 0042416 // dopamine biosynthetic process // not recorded /// 0042417 // dopamine metabolic process // not recorded /// 0042551 // neuron maturation // not recorded /// 0043085 // positive regulation of catalytic activity // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043576 // regulation of respiratory gaseous exchange // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // traceable author statement /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1369008_a_at NM_053573 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053573.1 /DB_XREF=gi:17865342 /GEN=Olfm1 /FEA=FLmRNA /CNT=6 /TID=Rn.11005.1 /TIER=FL /STK=2 /UG=Rn.11005 /LL=93667 /DEF=Rattus norvegicus olfactomedin related ER localized protein (Olfm1), mRNA. /PROD=olfactomedin related ER localized protein /FL=gb:U03417.1 gb:NM_053573.1 NM_053573 olfactomedin 1 Olfm1 93667 NM_053573 0007275 // multicellular organismal development // inferred from electronic annotation /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0051259 // protein oligomerization // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369009_at NM_017173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017173.1 /DB_XREF=gi:8393056 /GEN=Serpinh1 /FEA=FLmRNA /CNT=6 /TID=Rn.34917.1 /TIER=FL /STK=2 /UG=Rn.34917 /LL=29345 /DEF=Rattus norvegicus serine proteinase inhibitor, clade H (heat shock protein 47), member 1 (Serpinh1), mRNA. /PROD=serine proteinase inhibitor, clade H (heat shockprotein 47), member 1 /FL=gb:NM_017173.1 gb:M69246.1 NM_017173 serine (or cysteine) peptidase inhibitor, clade H, member 1 Serpinh1 29345 NM_017173 0006950 // response to stress // inferred from electronic annotation /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0030199 // collagen fibril organization // not recorded /// 0032964 // collagen biosynthetic process // inferred from electronic annotation /// 0032964 // collagen biosynthetic process // not recorded /// 0051604 // protein maturation // inferred from electronic annotation /// 0051604 // protein maturation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // not recorded 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005518 // collagen binding // traceable author statement /// 0051082 // unfolded protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // not recorded 1369010_at NM_053677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053677.1 /DB_XREF=gi:16758489 /GEN=Rad53 /FEA=FLmRNA /CNT=6 /TID=Rn.18487.1 /TIER=FL /STK=2 /UG=Rn.18487 /LL=114212 /DEF=Rattus norvegicus protein kinase Chk2 (Rad53), mRNA. /PROD=protein kinase Chk2 /FL=gb:AF134054.1 gb:NM_053677.1 NM_053677 CHK2 checkpoint homolog (S. pombe) Chek2 114212 NM_053677 0000077 // DNA damage checkpoint // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0008630 // DNA damage response, signal transduction resulting in induction of apoptosis // not recorded /// 0010332 // response to gamma radiation // inferred from electronic annotation /// 0010332 // response to gamma radiation // not recorded /// 0042770 // signal transduction in response to DNA damage // not recorded /// 0042770 // signal transduction in response to DNA damage // inferred from electronic annotation 0000781 // chromosome, telomeric region // not recorded /// 0016605 // PML body // not recorded 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation 1369011_at AF202888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF202888.1 /DB_XREF=gi:6707430 /GEN=ApoA5 /FEA=FLmRNA /CNT=6 /TID=Rn.48763.1 /TIER=FL /STK=2 /UG=Rn.48763 /LL=140638 /DEF=Rattus norvegicus apolipoprotein A5 (ApoA5) mRNA, complete cds, alternative transcript. /PROD=apolipoprotein A5 /FL=gb:NM_080576.1 gb:AF202888.1 gb:AF202887.1 AF202888 apolipoprotein A-V Apoa5 140638 NM_080576 0006641 // triglyceride metabolic process // not recorded /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from mutant phenotype /// 0006869 // lipid transport // not recorded /// 0006869 // lipid transport // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0010898 // positive regulation of triglyceride catabolic process // inferred from electronic annotation /// 0010898 // positive regulation of triglyceride catabolic process // not recorded /// 0010902 // positive regulation of very-low-density lipoprotein particle remodeling // inferred from electronic annotation /// 0010902 // positive regulation of very-low-density lipoprotein particle remodeling // not recorded /// 0019433 // triglyceride catabolic process // not recorded /// 0019433 // triglyceride catabolic process // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from expression pattern /// 0034370 // triglyceride-rich lipoprotein particle remodeling // inferred from electronic annotation /// 0034370 // triglyceride-rich lipoprotein particle remodeling // not recorded /// 0042157 // lipoprotein metabolic process // inferred from electronic annotation /// 0042246 // tissue regeneration // inferred from electronic annotation /// 0042246 // tissue regeneration // not recorded /// 0045723 // positive regulation of fatty acid biosynthetic process // inferred from electronic annotation /// 0045723 // positive regulation of fatty acid biosynthetic process // not recorded /// 0050996 // positive regulation of lipid catabolic process // not recorded /// 0050996 // positive regulation of lipid catabolic process // inferred from electronic annotation /// 0051006 // positive regulation of lipoprotein lipase activity // inferred from electronic annotation /// 0051006 // positive regulation of lipoprotein lipase activity // not recorded /// 0055090 // acylglycerol homeostasis // inferred from electronic annotation /// 0055090 // acylglycerol homeostasis // not recorded /// 0070328 // triglyceride homeostasis // inferred from electronic annotation /// 0070328 // triglyceride homeostasis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0034361 // very-low-density lipoprotein particle // inferred from electronic annotation /// 0034361 // very-low-density lipoprotein particle // not recorded /// 0034362 // low-density lipoprotein particle // not recorded /// 0034364 // high-density lipoprotein particle // inferred from electronic annotation /// 0034364 // high-density lipoprotein particle // not recorded /// 0042627 // chylomicron // inferred from electronic annotation /// 0042627 // chylomicron // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005543 // phospholipid binding // not recorded /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008047 // enzyme activator activity // not recorded /// 0008047 // enzyme activator activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded /// 0008289 // lipid binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0031210 // phosphatidylcholine binding // inferred from electronic annotation /// 0031210 // phosphatidylcholine binding // not recorded /// 0050750 // low-density lipoprotein receptor binding // inferred from electronic annotation /// 0050750 // low-density lipoprotein receptor binding // not recorded /// 0060229 // lipase activator activity // not recorded /// 0060229 // lipase activator activity // inferred from electronic annotation /// 0060230 // lipoprotein lipase activator activity // inferred from electronic annotation /// 0060230 // lipoprotein lipase activator activity // not recorded /// 0070325 // lipoprotein receptor binding // not recorded /// 0070325 // lipoprotein receptor binding // inferred from electronic annotation 1369012_at NM_017128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017128.1 /DB_XREF=gi:8393612 /GEN=Inhba /FEA=FLmRNA /CNT=6 /TID=Rn.9874.1 /TIER=FL /STK=2 /UG=Rn.9874 /LL=29200 /DEF=Rattus norvegicus inhibin beta-A (Inhba), mRNA. /PROD=inhibin beta-A /FL=gb:NM_017128.1 gb:M37482.1 NM_017128 inhibin beta-A Inhba 29200 NM_017128 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0001541 // ovarian follicle development // not recorded /// 0001707 // mesoderm formation // not recorded /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0001942 // hair follicle development // not recorded /// 0002244 // hemopoietic progenitor cell differentiation // inferred from electronic annotation /// 0002244 // hemopoietic progenitor cell differentiation // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008584 // male gonad development // not recorded /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0032925 // regulation of activin receptor signaling pathway // inferred from electronic annotation /// 0032925 // regulation of activin receptor signaling pathway // not recorded /// 0040007 // growth // inferred from electronic annotation /// 0042476 // odontogenesis // not recorded /// 0042541 // hemoglobin biosynthetic process // inferred from electronic annotation /// 0042541 // hemoglobin biosynthetic process // not recorded /// 0042701 // progesterone secretion // not recorded /// 0045648 // positive regulation of erythrocyte differentiation // inferred from electronic annotation /// 0045648 // positive regulation of erythrocyte differentiation // not recorded /// 0045786 // negative regulation of cell cycle // not recorded /// 0045786 // negative regulation of cell cycle // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046880 // regulation of follicle-stimulating hormone secretion // not recorded /// 0048333 // mesodermal cell differentiation // inferred from electronic annotation /// 0048333 // mesodermal cell differentiation // not recorded /// 0060021 // palate development // not recorded /// 0060279 // positive regulation of ovulation // not recorded /// 0060279 // positive regulation of ovulation // inferred from sequence or structural similarity /// 0061029 // eyelid development in camera-type eye // not recorded /// 0061029 // eyelid development in camera-type eye // inferred from sequence or structural similarity /// 0071372 // cellular response to follicle-stimulating hormone stimulus // inferred from direct assay /// 0071397 // cellular response to cholesterol // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0043509 // activin A complex // inferred from electronic annotation /// 0043509 // activin A complex // not recorded /// 0043512 // inhibin A complex // inferred from direct assay /// 0043512 // inhibin A complex // not recorded /// 0043512 // inhibin A complex // inferred from electronic annotation 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005179 // hormone activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0048184 // follistatin binding // inferred from electronic annotation /// 0048184 // follistatin binding // not recorded 1369013_a_at AI103095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103095 /DB_XREF=gi:3704825 /DB_XREF=EST212384 /CLONE=REMBX22 /FEA=EST /CNT=17 /TID=Rn.2938.2 /TIER=Stack /STK=15 /UG=Rn.2938 /LL=171061 /UG_GENE=LOC171061 /UG_TITLE=Na++Ca++ exchanger-associated protein AI103095 mitochondrial ribosomal protein L17 Mrpl17 171061 NM_133539 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded 1369014_at NM_012609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012609.1 /DB_XREF=gi:6981263 /GEN=Nf1 /FEA=FLmRNA /CNT=5 /TID=Rn.10686.1 /TIER=FL /STK=2 /UG=Rn.10686 /LL=24592 /DEF=Rattus norvegicus Neurofibromatosis type 1 (Nf1), mRNA. /PROD=neurofibromatosis type 1 /FL=gb:NM_012609.1 gb:D45201.1 NM_012609 neurofibromin 1 Nf1 24592 NM_012609 0000165 // MAPKKK cascade // not recorded /// 0000165 // MAPKKK cascade // inferred from sequence or structural similarity /// 0001649 // osteoblast differentiation // not recorded /// 0001649 // osteoblast differentiation // inferred from sequence or structural similarity /// 0001656 // metanephros development // not recorded /// 0001656 // metanephros development // inferred from sequence or structural similarity /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from sequence or structural similarity /// 0001889 // liver development // not recorded /// 0001889 // liver development // inferred from sequence or structural similarity /// 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0001952 // regulation of cell-matrix adhesion // not recorded /// 0001952 // regulation of cell-matrix adhesion // inferred from sequence or structural similarity /// 0001953 // negative regulation of cell-matrix adhesion // not recorded /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from sequence or structural similarity /// 0007154 // cell communication // not recorded /// 0007154 // cell communication // inferred from sequence or structural similarity /// 0007165 // signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded /// 0007265 // Ras protein signal transduction // inferred from sequence or structural similarity /// 0007406 // negative regulation of neuroblast proliferation // not recorded /// 0007406 // negative regulation of neuroblast proliferation // inferred from sequence or structural similarity /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from sequence or structural similarity /// 0007422 // peripheral nervous system development // not recorded /// 0007422 // peripheral nervous system development // inferred from sequence or structural similarity /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from sequence or structural similarity /// 0007519 // skeletal muscle tissue development // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008542 // visual learning // not recorded /// 0008542 // visual learning // inferred from sequence or structural similarity /// 0014044 // Schwann cell development // not recorded /// 0014044 // Schwann cell development // inferred from sequence or structural similarity /// 0014065 // phosphoinositide 3-kinase cascade // not recorded /// 0014065 // phosphoinositide 3-kinase cascade // inferred from sequence or structural similarity /// 0016525 // negative regulation of angiogenesis // not recorded /// 0021510 // spinal cord development // not recorded /// 0021510 // spinal cord development // inferred from sequence or structural similarity /// 0021897 // forebrain astrocyte development // not recorded /// 0021897 // forebrain astrocyte development // inferred from sequence or structural similarity /// 0021915 // neural tube development // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0021987 // cerebral cortex development // inferred from sequence or structural similarity /// 0022011 // myelination in peripheral nervous system // not recorded /// 0022011 // myelination in peripheral nervous system // inferred from sequence or structural similarity /// 0030036 // actin cytoskeleton organization // not recorded /// 0030036 // actin cytoskeleton organization // inferred from sequence or structural similarity /// 0030198 // extracellular matrix organization // not recorded /// 0030198 // extracellular matrix organization // inferred from sequence or structural similarity /// 0030199 // collagen fibril organization // not recorded /// 0030199 // collagen fibril organization // inferred from sequence or structural similarity /// 0030325 // adrenal gland development // not recorded /// 0030325 // adrenal gland development // inferred from sequence or structural similarity /// 0030336 // negative regulation of cell migration // not recorded /// 0032228 // regulation of synaptic transmission, GABAergic // not recorded /// 0032318 // regulation of Ras GTPase activity // inferred from mutant phenotype /// 0032318 // regulation of Ras GTPase activity // not recorded /// 0032320 // positive regulation of Ras GTPase activity // not recorded /// 0032320 // positive regulation of Ras GTPase activity // inferred from sequence or structural similarity /// 0035021 // negative regulation of Rac protein signal transduction // not recorded /// 0042060 // wound healing // not recorded /// 0042060 // wound healing // inferred from sequence or structural similarity /// 0042127 // regulation of cell proliferation // not recorded /// 0042992 // negative regulation of transcription factor import into nucleus // not recorded /// 0042992 // negative regulation of transcription factor import into nucleus // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from sequence or structural similarity /// 0043407 // negative regulation of MAP kinase activity // not recorded /// 0043407 // negative regulation of MAP kinase activity // inferred from sequence or structural similarity /// 0043409 // negative regulation of MAPKKK cascade // not recorded /// 0043409 // negative regulation of MAPKKK cascade // inferred from sequence or structural similarity /// 0043473 // pigmentation // not recorded /// 0043473 // pigmentation // inferred from sequence or structural similarity /// 0043525 // positive regulation of neuron apoptosis // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from sequence or structural similarity /// 0043535 // regulation of blood vessel endothelial cell migration // not recorded /// 0045124 // regulation of bone resorption // not recorded /// 0045124 // regulation of bone resorption // inferred from sequence or structural similarity /// 0045664 // regulation of neuron differentiation // inferred from mutant phenotype /// 0045671 // negative regulation of osteoclast differentiation // not recorded /// 0045685 // regulation of glial cell differentiation // not recorded /// 0045685 // regulation of glial cell differentiation // inferred from sequence or structural similarity /// 0045762 // positive regulation of adenylate cyclase activity // not recorded /// 0045762 // positive regulation of adenylate cyclase activity // inferred from sequence or structural similarity /// 0045765 // regulation of angiogenesis // not recorded /// 0045765 // regulation of angiogenesis // inferred from sequence or structural similarity /// 0046580 // negative regulation of Ras protein signal transduction // not recorded /// 0046929 // negative regulation of neurotransmitter secretion // not recorded /// 0048169 // regulation of long-term neuronal synaptic plasticity // not recorded /// 0048485 // sympathetic nervous system development // not recorded /// 0048485 // sympathetic nervous system development // inferred from sequence or structural similarity /// 0048593 // camera-type eye morphogenesis // not recorded /// 0048593 // camera-type eye morphogenesis // inferred from sequence or structural similarity /// 0048712 // negative regulation of astrocyte differentiation // not recorded /// 0048715 // negative regulation of oligodendrocyte differentiation // not recorded /// 0048715 // negative regulation of oligodendrocyte differentiation // inferred from sequence or structural similarity /// 0048745 // smooth muscle tissue development // not recorded /// 0048745 // smooth muscle tissue development // inferred from sequence or structural similarity /// 0048844 // artery morphogenesis // not recorded /// 0048844 // artery morphogenesis // inferred from sequence or structural similarity /// 0048853 // forebrain morphogenesis // not recorded /// 0048853 // forebrain morphogenesis // inferred from sequence or structural similarity /// 0050890 // cognition // not recorded /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0019717 // synaptosome // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // not recorded /// 0030425 // dendrite // inferred from direct assay /// 0030425 // dendrite // not recorded /// 0043234 // protein complex // inferred from direct assay 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // not recorded /// 0005099 // Ras GTPase activator activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // inferred from direct assay /// 0045545 // syndecan binding // inferred from physical interaction 1369015_at NM_052799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_052799.1 /DB_XREF=gi:16258810 /GEN=Nos1 /FEA=FLmRNA /CNT=5 /TID=Rn.10573.1 /TIER=FL /STK=2 /UG=Rn.10573 /LL=24598 /DEF=Rattus norvegicus Nitric oxide synthase 1 (neuronal) (Nos1), mRNA. /PROD=nitric oxide synthase 1 (neuronal) /FL=gb:NM_052799.1 gb:U67309.1 NM_052799 nitric oxide synthase 1, neuronal Nos1 24598 NM_052799 0001666 // response to hypoxia // inferred from expression pattern /// 0001666 // response to hypoxia // not recorded /// 0002028 // regulation of sodium ion transport // not recorded /// 0006527 // arginine catabolic process // inferred from direct assay /// 0006809 // nitric oxide biosynthetic process // inferred from direct assay /// 0006809 // nitric oxide biosynthetic process // inferred from electronic annotation /// 0006809 // nitric oxide biosynthetic process // not recorded /// 0006941 // striated muscle contraction // not recorded /// 0007568 // aging // inferred from expression pattern /// 0008016 // regulation of heart contraction // inferred from mutant phenotype /// 0009408 // response to heat // inferred from expression pattern /// 0009408 // response to heat // not recorded /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0018119 // peptidyl-cysteine S-nitrosylation // not recorded /// 0033197 // response to vitamin E // inferred from expression pattern /// 0033555 // multicellular organismal response to stress // not recorded /// 0042738 // exogenous drug catabolic process // not recorded /// 0043267 // negative regulation of potassium ion transport // not recorded /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0045471 // response to ethanol // inferred from expression pattern /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0045822 // negative regulation of heart contraction // inferred from mutant phenotype /// 0045909 // positive regulation of vasodilation // inferred from mutant phenotype /// 0045909 // positive regulation of vasodilation // not recorded /// 0046676 // negative regulation of insulin secretion // inferred from mutant phenotype /// 0051346 // negative regulation of hydrolase activity // not recorded /// 0051926 // negative regulation of calcium ion transport // not recorded /// 0051930 // regulation of sensory perception of pain // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0001917 // photoreceptor inner segment // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005856 // cytoskeleton // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // not recorded /// 0030425 // dendrite // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay /// 0042383 // sarcolemma // inferred from direct assay /// 0042383 // sarcolemma // not recorded /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042582 // azurophil granule // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004517 // nitric-oxide synthase activity // inferred from direct assay /// 0004517 // nitric-oxide synthase activity // inferred from electronic annotation /// 0004517 // nitric-oxide synthase activity // not recorded /// 0004517 // nitric-oxide synthase activity // traceable author statement /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from direct assay /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0010181 // FMN binding // inferred from direct assay /// 0010181 // FMN binding // inferred from electronic annotation /// 0010181 // FMN binding // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016597 // amino acid binding // traceable author statement /// 0019899 // enzyme binding // inferred from physical interaction /// 0020037 // heme binding // inferred from direct assay /// 0020037 // heme binding // inferred from electronic annotation /// 0020037 // heme binding // traceable author statement /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046870 // cadmium ion binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from direct assay /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // traceable author statement /// 0050661 // NADP or NADPH binding // inferred from direct assay /// 0050661 // NADP or NADPH binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // traceable author statement 1369016_at NM_017358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017358.1 /DB_XREF=gi:8393086 /GEN=CDO /FEA=FLmRNA /CNT=5 /TID=Rn.10818.1 /TIER=FL /STK=2 /UG=Rn.10818 /LL=50938 /DEF=Rattus norvegicus immunoglobulin superfamily member (CDO), mRNA. /PROD=immunoglobulin superfamily member /FL=gb:NM_017358.1 gb:AF004840.1 NM_017358 Cdon homolog (mouse) Cdon 50938 NM_017358 0001708 // cell fate specification // inferred from electronic annotation /// 0001708 // cell fate specification // not recorded /// 0007155 // cell adhesion // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // inferred from direct assay /// 0007224 // smoothened signaling pathway // not recorded /// 0007224 // smoothened signaling pathway // inferred from electronic annotation /// 0007520 // myoblast fusion // inferred from electronic annotation /// 0007520 // myoblast fusion // not recorded /// 0010172 // embryonic body morphogenesis // inferred from electronic annotation /// 0010172 // embryonic body morphogenesis // not recorded /// 0048598 // embryonic morphogenesis // not recorded /// 0048598 // embryonic morphogenesis // inferred from electronic annotation 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369017_at NM_053937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053937.1 /DB_XREF=gi:16758817 /GEN=Erg2 /FEA=FLmRNA /CNT=5 /TID=Rn.10875.1 /TIER=FL /STK=2 /UG=Rn.10875 /LL=116745 /DEF=Rattus norvegicus Eag-related gene member 2 (Erg2), mRNA. /PROD=Eag-related gene member 2 /FL=gb:NM_053937.1 gb:AF016192.1 NM_053937 potassium voltage-gated channel, subfamily H (eag-related), member 6 Kcnh6 116745 NM_053937 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from direct assay /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0005887 // integral to plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from direct assay /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from direct assay /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // traceable author statement /// 0005267 // potassium channel activity // inferred from electronic annotation 1369018_at NM_031633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031633.1 /DB_XREF=gi:13928873 /GEN=Foxm1 /FEA=FLmRNA /CNT=5 /TID=Rn.10665.1 /TIER=FL /STK=2 /UG=Rn.10665 /LL=58921 /DEF=Rattus norvegicus forkhead box M1 (Foxm1), mRNA. /PROD=forkhead box M1 /FL=gb:NM_031633.1 gb:U83112.1 NM_031633 forkhead box M1 Foxm1 58921 NM_031633 0000302 // response to reactive oxygen species // not recorded /// 0001570 // vasculogenesis // not recorded /// 0001889 // liver development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0032873 // negative regulation of stress-activated MAPK cascade // not recorded /// 0034698 // response to gonadotropin stimulus // inferred from expression pattern /// 0042127 // regulation of cell proliferation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046578 // regulation of Ras protein signal transduction // not recorded /// 0051591 // response to cAMP // inferred from expression pattern /// 0071156 // regulation of cell cycle arrest // not recorded /// 0080010 // regulation of oxygen and reactive oxygen species metabolic process // not recorded /// 0090344 // negative regulation of cell aging // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1369019_at NM_017078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017078.1 /DB_XREF=gi:8393125 /GEN=Chrna5 /FEA=FLmRNA /CNT=5 /TID=Rn.40125.1 /TIER=FL /STK=2 /UG=Rn.40125 /LL=25102 /DEF=Rattus norvegicus Acetylcholine receptor alpha 5 (Chrna5), mRNA. /PROD=acetylcholine receptor alpha 5 /FL=gb:NM_017078.1 gb:J05231.1 NM_017078 cholinergic receptor, nicotinic, alpha 5 Chrna5 25102 NM_017078 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0035094 // response to nicotine // not recorded /// 0035094 // response to nicotine // inferred from electronic annotation /// 0035095 // behavioral response to nicotine // inferred from electronic annotation /// 0035095 // behavioral response to nicotine // not recorded 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from mutant phenotype /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // not recorded /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from mutant phenotype /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0015464 // acetylcholine receptor activity // inferred from electronic annotation /// 0015464 // acetylcholine receptor activity // not recorded /// 0042166 // acetylcholine binding // inferred from direct assay 1369020_at NM_052983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_052983.1 /DB_XREF=gi:16418484 /GEN=Slc5a5 /FEA=FLmRNA /CNT=5 /TID=Rn.10505.1 /TIER=FL /STK=2 /UG=Rn.10505 /LL=114613 /DEF=Rattus norvegicus solute carrier family 5 (sodium iodide symporter), member 5 (Slc5a5), mRNA. /PROD=solute carrier family 5 (sodium iodidesymporter), member 5 /FL=gb:NM_052983.1 gb:U60282.1 NM_052983 solute carrier family 5 (sodium iodide symporter), member 5 Slc5a5 114613 NM_052983 0006590 // thyroid hormone generation // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006820 // anion transport // not recorded /// 0015705 // iodide transport // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055085 // transmembrane transport // not recorded /// 0071436 // sodium ion export // not recorded 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0008507 // sodium:iodide symporter activity // inferred from direct assay /// 0008507 // sodium:iodide symporter activity // not recorded /// 0008507 // sodium:iodide symporter activity // inferred from electronic annotation /// 0015111 // iodide transmembrane transporter activity // not recorded /// 0015293 // symporter activity // inferred from electronic annotation /// 0015293 // symporter activity // not recorded 1369021_at NM_013064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013064.1 /DB_XREF=gi:6981017 /GEN=Hcrtr1 /FEA=FLmRNA /CNT=5 /TID=Rn.9892.1 /TIER=FL /STK=2 /UG=Rn.9892 /LL=25593 /DEF=Rattus norvegicus Hypocretin (orexin) receptor 1 (Hcrtr1), mRNA. /PROD=hypocretin (orexin) receptor 1 /FL=gb:AF041244.1 gb:NM_013064.1 NM_013064 hypocretin (orexin) receptor 1 Hcrtr1 25593 NM_013064 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0016499 // orexin receptor activity // inferred from direct assay /// 0016499 // orexin receptor activity // traceable author statement /// 0016499 // orexin receptor activity // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred from direct assay 1369022_at NM_134404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134404.1 /DB_XREF=gi:19705530 /GEN=Svop /FEA=FLmRNA /CNT=5 /TID=Rn.30057.1 /TIER=FL /STK=2 /UG=Rn.30057 /LL=171442 /DEF=Rattus norvegicus SV2 related protein (Svop), mRNA. /PROD=SV2 related protein /FL=gb:AF060173.1 gb:NM_134404.1 NM_134404 SV2 related protein Svop 171442 NM_134404 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008021 // synaptic vesicle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0015075 // ion transmembrane transporter activity // inferred from electronic annotation 1369023_at NM_031052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031052.1 /DB_XREF=gi:13591986 /GEN=Mipep /FEA=FLmRNA /CNT=5 /TID=Rn.2266.1 /TIER=FL /STK=2 /UG=Rn.2266 /LL=81684 /DEF=Rattus norvegicus mitochondrial intermediate peptidase (Mipep), mRNA. /PROD=mitochondrial intermediate peptidase /FL=gb:NM_031052.1 gb:M96633.1 NM_031052 mitochondrial intermediate peptidase Mipep 81684 NM_031052 0006508 // proteolysis // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369024_at NM_030585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030585.1 /DB_XREF=gi:13399335 /GEN=Fra /FEA=FLmRNA /CNT=5 /TID=Rn.3228.1 /TIER=FL /STK=2 /UG=Rn.3228 /LL=80754 /DEF=Rattus norvegicus Fos-related antigen (Fra), mRNA. /PROD=Fos-related antigen /FL=gb:NM_030585.1 gb:U34932.1 NM_030585 rabaptin, RAB GTPase binding effector protein 2 Rabep2 80754 NM_030585 0006810 // transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation 1369025_at NM_019295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019295.1 /DB_XREF=gi:9506470 /GEN=Cd5 /FEA=FLmRNA /CNT=5 /TID=Rn.11337.1 /TIER=FL /STK=2 /UG=Rn.11337 /LL=54236 /DEF=Rattus norvegicus Lymphocyte antigen CD5 (Cd5), mRNA. /PROD=Lymphocyte antigen CD5 /FL=gb:D10728.1 gb:NM_019295.1 NM_019295 Cd5 molecule Cd5 54236 NM_019295 0008624 // induction of apoptosis by extracellular signals // inferred from electronic annotation /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0009966 // regulation of signal transduction // non-traceable author statement /// 0031295 // T cell costimulation // inferred from electronic annotation /// 0031295 // T cell costimulation // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0044214 // fully spanning the plasma membrane // inferred from direct assay 0001948 // glycoprotein binding // inferred from physical interaction /// 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1369026_at NM_021763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021763.1 /DB_XREF=gi:11120713 /GEN=LOC60382 /FEA=FLmRNA /CNT=5 /TID=Rn.37130.1 /TIER=FL /STK=2 /UG=Rn.37130 /LL=60382 /DEF=Rattus norvegicus arfaptin 1 (LOC60382), mRNA. /PROD=arfaptin 1 /FL=gb:AY004875.1 gb:NM_021763.1 NM_021763 ADP-ribosylation factor interacting protein 1 Arfip1 60382 NM_021763 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0050708 // regulation of protein secretion // inferred from electronic annotation /// 0050708 // regulation of protein secretion // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0000139 // Golgi membrane // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1369027_at NM_022240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022240.1 /DB_XREF=gi:11560037 /GEN=Gb3 /FEA=FLmRNA /CNT=5 /TID=Rn.48584.1 /TIER=FL /STK=2 /UG=Rn.48584 /LL=63888 /DEF=Rattus norvegicus Gb3 synthase (Gb3), mRNA. /PROD=Gb3 synthase /FL=gb:AF248544.1 gb:NM_022240.1 NM_022240 alpha 1,4-galactosyltransferase A4galt 63888 NM_022240 0007009 // plasma membrane organization // not recorded /// 0008610 // lipid biosynthetic process // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008378 // galactosyltransferase activity // inferred from direct assay /// 0008378 // galactosyltransferase activity // not recorded /// 0008378 // galactosyltransferase activity // inferred from sequence or structural similarity /// 0008378 // galactosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0050512 // lactosylceramide 4-alpha-galactosyltransferase activity // inferred from electronic annotation 1369028_at NM_023990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023990.1 /DB_XREF=gi:13027451 /GEN=Six3 /FEA=FLmRNA /CNT=5 /TID=Rn.64582.1 /TIER=FL /STK=2 /UG=Rn.64582 /LL=78974 /DEF=Rattus norvegicus homeobox protein Six3 (Six3), mRNA. /PROD=homeobox protein Six3 /FL=gb:AB030833.1 gb:NM_023990.1 NM_023990 SIX homeobox 3 Six3 78974 NM_023990 0001654 // eye development // not recorded /// 0001654 // eye development // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006606 // protein import into nucleus // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0021536 // diencephalon development // inferred from electronic annotation /// 0021536 // diencephalon development // not recorded /// 0021537 // telencephalon development // inferred from electronic annotation /// 0021537 // telencephalon development // not recorded /// 0021797 // forebrain anterior/posterior pattern formation // inferred from electronic annotation /// 0021797 // forebrain anterior/posterior pattern formation // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0043010 // camera-type eye development // inferred from electronic annotation /// 0043010 // camera-type eye development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060235 // lens induction in camera-type eye // inferred from electronic annotation /// 0060235 // lens induction in camera-type eye // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005102 // receptor binding // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1369029_at NM_057194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057194.1 /DB_XREF=gi:17105345 /GEN=Plscr1 /FEA=FLmRNA /CNT=5 /TID=Rn.35796.1 /TIER=FL /STK=2 /UG=Rn.35796 /LL=117540 /DEF=Rattus norvegicus phospholipid scramblase 1 (Plscr1), mRNA. /PROD=phospholipid scramblase 1 /FL=gb:AY024347.1 gb:NM_057194.1 NM_057194 phospholipid scramblase 1 Plscr1 117540 NM_057194 0006955 // immune response // inferred from mutant phenotype /// 0009615 // response to virus // inferred from electronic annotation /// 0015914 // phospholipid transport // traceable author statement /// 0030099 // myeloid cell differentiation // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0017124 // SH3 domain binding // inferred from electronic annotation 1369030_at NM_012635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012635.1 /DB_XREF=gi:6981419 /GEN=Prss1 /FEA=FLmRNA /CNT=5 /TID=Rn.34435.1 /TIER=FL /STK=2 /UG=Rn.34435 /LL=24691 /DEF=Rattus norvegicus Pancreatic trypsin 1 (Prss1), mRNA. /PROD=pancreatic trypsin 1 /FL=gb:NM_012635.1 NM_012635 protease, serine, 1 (trypsin 1) Prss1 24691 NM_012635 0006508 // proteolysis // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from expression pattern /// 0007586 // digestion // traceable author statement /// 0007586 // digestion // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from expression pattern /// 0031000 // response to caffeine // inferred from direct assay /// 0035094 // response to nicotine // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369031_at NM_053374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053374.1 /DB_XREF=gi:16758105 /GEN=Igifbp /FEA=FLmRNA /CNT=5 /TID=Rn.20083.1 /TIER=FL /STK=2 /UG=Rn.20083 /LL=84388 /DEF=Rattus norvegicus interferon gamma inducing factor binding protein (Igifbp), mRNA. /PROD=interferon gamma inducing factor bindingprotein /FL=gb:NM_053374.1 gb:AF154569.1 NM_053374 interleukin 18 binding protein Il18bp 84388 NM_053374 0042088 // T-helper 1 type immune response // inferred from electronic annotation /// 0042088 // T-helper 1 type immune response // not recorded 0042007 // interleukin-18 binding // inferred from electronic annotation /// 0042007 // interleukin-18 binding // not recorded 1369032_at NM_133582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133582.1 /DB_XREF=gi:19424275 /GEN=Blcap /FEA=FLmRNA /CNT=5 /TID=Rn.72810.1 /TIER=FL /STK=2 /UG=Rn.72810 /DEF=Rattus norvegicus bladder cancer associated protein (Blcap), mRNA. /PROD=bladder cancer associated protein /FL=gb:AB071598.1 gb:NM_133582.1 NM_133582 bladder cancer associated protein homolog (human) Blcap 171113 NM_133582 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007049 // cell cycle // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1369033_at NM_012978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012978.1 /DB_XREF=gi:6981159 /GEN=Lhcgr /FEA=FLmRNA /CNT=15 /TID=Rn.11216.1 /TIER=FL /STK=2 /UG=Rn.11216 /LL=25477 /DEF=Rattus norvegicus Luteinizing hormonechoriogonadotropin receptor (Lhcgr), mRNA. /PROD=luteinizing hormonechoriogonadotropin receptor /FL=gb:M26199.1 gb:NM_012978.1 NM_012978 luteinizing hormone/choriogonadotropin receptor Lhcgr 25477 NM_012978 0006622 // protein targeting to lysosome // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from direct assay /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from mutant phenotype /// 0007190 // activation of adenylate cyclase activity // inferred from direct assay /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from direct assay /// 0009755 // hormone-mediated signaling pathway // inferred from direct assay /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0042700 // luteinizing hormone signaling pathway // inferred from direct assay /// 0046886 // positive regulation of hormone biosynthetic process // inferred from direct assay /// 0050482 // arachidonic acid secretion // inferred from direct assay /// 0050810 // regulation of steroid biosynthetic process // inferred from expression pattern /// 0050850 // positive regulation of calcium-mediated signaling // inferred from direct assay /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031233 // intrinsic to external side of plasma membrane // inferred from direct assay /// 0043235 // receptor complex // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004964 // luteinizing hormone receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0008528 // peptide receptor activity, G-protein coupled // inferred from direct assay /// 0016500 // protein-hormone receptor activity // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred from direct assay /// 0017046 // peptide hormone binding // inferred from mutant phenotype /// 0017046 // peptide hormone binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0051117 // ATPase binding // inferred from physical interaction 1369034_at NM_013192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013192.1 /DB_XREF=gi:6981125 /GEN=Kcnj6 /FEA=FLmRNA /CNT=13 /TID=Rn.10185.1 /TIER=FL /STK=2 /UG=Rn.10185 /LL=25743 /DEF=Rattus norvegicus Potassium inwardly-rectifying, channel, subfamily J, member 6 (Kcnj6), mRNA. /PROD=potassium inwardly-rectifying, channel,subfamily J, member 6 /FL=gb:AB073753.1 gb:U21087.1 gb:NM_013192.1 NM_013192 potassium inwardly-rectifying channel, subfamily J, member 6 Kcnj6 25743 NM_013192 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // not recorded /// 0034765 // regulation of ion transmembrane transport // not recorded /// 0042403 // thyroid hormone metabolic process // not recorded /// 0051602 // response to electrical stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0032809 // neuronal cell body membrane // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0015467 // G-protein activated inward rectifier potassium channel activity // inferred from electronic annotation /// 0015467 // G-protein activated inward rectifier potassium channel activity // not recorded 1369035_a_at AB073753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB073753.1 /DB_XREF=gi:18765767 /GEN=GIRK2A-3 /FEA=FLmRNA /CNT=13 /TID=Rn.10185.1 /TIER=FL /STK=2 /UG=Rn.10185 /LL=25743 /DEF=Rattus norvegicus GIRK2A-3 gene for GIRK2A, complete cds. /PROD=GIRK2A /FL=gb:AB073753.1 gb:U21087.1 gb:NM_013192.1 AB073753 potassium inwardly-rectifying channel, subfamily J, member 6 Kcnj6 25743 NM_013192 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // not recorded /// 0034765 // regulation of ion transmembrane transport // not recorded /// 0042403 // thyroid hormone metabolic process // not recorded /// 0051602 // response to electrical stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0032809 // neuronal cell body membrane // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0015467 // G-protein activated inward rectifier potassium channel activity // inferred from electronic annotation /// 0015467 // G-protein activated inward rectifier potassium channel activity // not recorded 1369036_at NM_019309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019309.1 /DB_XREF=gi:9506754 /GEN=Grik2 /FEA=FLmRNA /CNT=7 /TID=Rn.10451.1 /TIER=FL /STK=2 /UG=Rn.10451 /LL=54257 /DEF=Rattus norvegicus glutamate receptor, ionotropic, kainate 2 (Grik2), mRNA. /PROD=glutamate receptor, ionotropic, kainate 2 /FL=gb:NM_019309.1 NM_019309 glutamate receptor, ionotropic, kainate 2 Grik2 54257 NM_019309 0001662 // behavioral fear response // inferred from electronic annotation /// 0001662 // behavioral fear response // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0007165 // signal transduction // not recorded /// 0007268 // synaptic transmission // inferred from mutant phenotype /// 0007268 // synaptic transmission // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0019228 // regulation of action potential in neuron // inferred from electronic annotation /// 0019228 // regulation of action potential in neuron // not recorded /// 0035249 // synaptic transmission, glutamatergic // not recorded /// 0035249 // synaptic transmission, glutamatergic // inferred from electronic annotation /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded /// 0043113 // receptor clustering // inferred from direct assay /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0046328 // regulation of JNK cascade // inferred from mutant phenotype /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // not recorded /// 0048172 // regulation of short-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048172 // regulation of short-term neuronal synaptic plasticity // not recorded /// 0050804 // regulation of synaptic transmission // not recorded /// 0050804 // regulation of synaptic transmission // inferred from electronic annotation /// 0050806 // positive regulation of synaptic transmission // inferred from electronic annotation /// 0050806 // positive regulation of synaptic transmission // not recorded /// 0051402 // neuron apoptosis // inferred from mutant phenotype /// 0051402 // neuron apoptosis // not recorded /// 0051402 // neuron apoptosis // inferred from electronic annotation /// 0051967 // negative regulation of synaptic transmission, glutamatergic // inferred from direct assay /// 0051967 // negative regulation of synaptic transmission, glutamatergic // not recorded /// 0051967 // negative regulation of synaptic transmission, glutamatergic // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded /// 0060080 // regulation of inhibitory postsynaptic membrane potential // inferred from electronic annotation /// 0060080 // regulation of inhibitory postsynaptic membrane potential // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0008328 // ionotropic glutamate receptor complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0032839 // dendrite cytoplasm // inferred from direct assay /// 0032983 // kainate selective glutamate receptor complex // inferred from electronic annotation /// 0032983 // kainate selective glutamate receptor complex // not recorded /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0042734 // presynaptic membrane // not recorded /// 0043025 // neuronal cell body // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043195 // terminal button // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0045211 // postsynaptic membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // not recorded /// 0004970 // ionotropic glutamate receptor activity // traceable author statement /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008066 // glutamate receptor activity // inferred from direct assay /// 0015277 // kainate selective glutamate receptor activity // inferred from direct assay /// 0015277 // kainate selective glutamate receptor activity // not recorded /// 0015277 // kainate selective glutamate receptor activity // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0031624 // ubiquitin conjugating enzyme binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay 1369037_at NM_019349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019349.1 /DB_XREF=gi:9507154 /GEN=Stk2 /FEA=FLmRNA /CNT=7 /TID=Rn.33275.1 /TIER=FL /STK=2 /UG=Rn.33275 /LL=54308 /DEF=Rattus norvegicus Serinethreonine kinase 2 (Stk2), mRNA. /PROD=Serinethreonine kinase 2 /FL=gb:NM_019349.1 gb:AB003357.1 NM_019349 0006289 // nucleotide-excision repair // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction 1369038_at NM_031691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031691.1 /DB_XREF=gi:13928959 /GEN=Itgax /FEA=FLmRNA /CNT=7 /TID=Rn.34728.1 /TIER=FL /STK=2 /UG=Rn.34728 /LL=64350 /DEF=Rattus norvegicus integrin alpha X (Cd11c) (Itgax), mRNA. /PROD=integrin alpha X (Cd11c) /FL=gb:NM_031691.1 gb:AF021334.1 NM_031691 integrin, alpha D Itgad 64350 NM_031691 0007155 // cell adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0050798 // activated T cell proliferation // inferred from electronic annotation /// 0050798 // activated T cell proliferation // not recorded 0008305 // integrin complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1369039_at NM_031083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031083.1 /DB_XREF=gi:14389294 /GEN=Pik4cb /FEA=FLmRNA /CNT=7 /TID=Rn.14991.1 /TIER=FL /STK=2 /UG=Rn.14991 /LL=81747 /DEF=Rattus norvegicus phosphatidylinositol 4-kinase (Pik4cb), mRNA. /PROD=phosphatidylinositol 4-kinase b /FL=gb:NM_031083.1 gb:D84667.1 NM_031083 phosphatidylinositol 4-kinase, catalytic, beta Pi4kb 81747 NM_031083 0007165 // signal transduction // traceable author statement /// 0046854 // phosphoinositide phosphorylation // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030867 // rough endoplasmic reticulum membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004428 // inositol or phosphatidylinositol kinase activity // inferred from electronic annotation /// 0004430 // 1-phosphatidylinositol 4-kinase activity // inferred from direct assay /// 0004430 // 1-phosphatidylinositol 4-kinase activity // traceable author statement /// 0004430 // 1-phosphatidylinositol 4-kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1369040_at NM_053657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053657.1 /DB_XREF=gi:16758473 /GEN=Pk428 /FEA=FLmRNA /CNT=6 /TID=Rn.10871.1 /TIER=FL /STK=2 /UG=Rn.10871 /LL=114116 /DEF=Rattus norvegicus Ser-Thr protein kinase related to the myotonic dystrophy protein kinase (Pk428), mRNA. /PROD=Ser-Thr protein kinase related to the myotonicdystrophy protein kinase /FL=gb:NM_053657.1 gb:AF021935.1 NM_053657 CDC42 binding protein kinase alpha Cdc42bpa 114116 NM_053657 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0000226 // microtubule cytoskeleton organization // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007010 // cytoskeleton organization // inferred from direct assay /// 0007097 // nuclear migration // inferred from electronic annotation /// 0007097 // nuclear migration // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0031532 // actin cytoskeleton reorganization // inferred from direct assay /// 0031532 // actin cytoskeleton reorganization // not recorded /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from direct assay /// 0031252 // cell leading edge // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1369041_at NM_053868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053868.1 /DB_XREF=gi:16758735 /GEN=Nlgn1 /FEA=FLmRNA /CNT=6 /TID=Rn.10173.1 /TIER=FL /STK=2 /UG=Rn.10173 /LL=116647 /DEF=Rattus norvegicus neuroligin 1 (Nlgn1), mRNA. /PROD=neuroligin 1 /FL=gb:NM_053868.1 gb:U22952.1 NM_053868 neuroligin 1 Nlgn1 116647 NM_053868 0002087 // regulation of respiratory gaseous exchange by neurological system process // inferred from electronic annotation /// 0002087 // regulation of respiratory gaseous exchange by neurological system process // not recorded /// 0006605 // protein targeting // inferred from direct assay /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from sequence or structural similarity /// 0007399 // nervous system development // inferred from electronic annotation /// 0007416 // synapse assembly // not recorded /// 0007416 // synapse assembly // inferred from sequence or structural similarity /// 0007416 // synapse assembly // inferred from electronic annotation /// 0016080 // synaptic vesicle targeting // not recorded /// 0016080 // synaptic vesicle targeting // inferred from sequence or structural similarity /// 0016080 // synaptic vesicle targeting // inferred from electronic annotation /// 0016339 // calcium-dependent cell-cell adhesion // inferred from direct assay /// 0045161 // neuronal ion channel clustering // traceable author statement /// 0045664 // regulation of neuron differentiation // not recorded /// 0045664 // regulation of neuron differentiation // inferred from sequence or structural similarity /// 0045664 // regulation of neuron differentiation // inferred from electronic annotation /// 0050804 // regulation of synaptic transmission // inferred from electronic annotation /// 0050804 // regulation of synaptic transmission // not recorded /// 0050808 // synapse organization // inferred from direct assay /// 0051290 // protein heterotetramerization // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0042043 // neurexin binding // inferred from physical interaction /// 0042043 // neurexin binding // not recorded /// 0042043 // neurexin binding // inferred from sequence or structural similarity 1369042_at NM_024144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024144.1 /DB_XREF=gi:13162328 /GEN=Pigm /FEA=FLmRNA /CNT=6 /TID=Rn.51538.1 /TIER=FL /STK=2 /UG=Rn.51538 /LL=79112 /DEF=Rattus norvegicus PIG-M mRNA for mannosyltransferase (Pigm), mRNA. /PROD=PIG-M mRNA for mannosyltransferase /FL=gb:AB028126.1 gb:NM_024144.1 NM_024144 phosphatidylinositol glycan anchor biosynthesis, class M Pigm 79112 NM_024144 0006506 // GPI anchor biosynthetic process // inferred from direct assay /// 0006506 // GPI anchor biosynthetic process // inferred from electronic annotation /// 0016254 // preassembly of GPI anchor in ER membrane // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000030 // mannosyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1369043_at NM_012971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012971.1 /DB_XREF=gi:6981115 /GEN=Kcna4 /FEA=FLmRNA /CNT=6 /TID=Rn.9884.1 /TIER=FL /STK=2 /UG=Rn.9884 /LL=25469 /DEF=Rattus norvegicus Potassium voltage gated channel, shaker related subfamily, member 4 (Kcna4), mRNA. /PROD=potassium voltage gated channel, shaker relatedsubfamily, member 4 /FL=gb:NM_012971.1 gb:M32867.1 NM_012971 potassium voltage-gated channel, shaker-related subfamily, member 4 Kcna4 25469 NM_012971 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // traceable author statement /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005887 // integral to plasma membrane // inferred from direct assay /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from direct assay /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from direct assay /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from direct assay /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030955 // potassium ion binding // inferred from electronic annotation 1369044_a_at AF202733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF202733.1 /DB_XREF=gi:16930144 /GEN=Pde4b /FEA=FLmRNA /CNT=1 /TID=Rn.2485.4 /TIER=FL /STK=1 /UG=Rn.2485 /LL=24626 /DEF=Rattus norvegicus cAMP-specific phosphodiesterase isoform PDE4B4 (Pde4b) mRNA, complete cds. /PROD=cAMP-specific phosphodiesterase isoform PDE4B4 /FL=gb:AF202733.1 AF202733 phosphodiesterase 4B, cAMP specific Pde4b 24626 NM_017031 0006198 // cAMP catabolic process // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369045_at NM_053764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053764.1 /DB_XREF=gi:16758599 /GEN=Rgs14 /FEA=FLmRNA /CNT=6 /TID=Rn.9795.1 /TIER=FL /STK=2 /UG=Rn.9795 /LL=114705 /DEF=Rattus norvegicus regulator of G-protein signaling 14 (Rgs14), mRNA. /PROD=regulator of G-protein signaling 14 /FL=gb:U92279.1 gb:NM_053764.1 NM_053764 regulator of G-protein signaling 14 Rgs14 114705 NM_053764 0007067 // mitosis // inferred from electronic annotation /// 0007067 // mitosis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005819 // spindle // inferred from electronic annotation /// 0005819 // spindle // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0005057 // receptor signaling protein activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // traceable author statement /// 0005096 // GTPase activator activity // inferred from electronic annotation 1369046_at NM_022191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022191.1 /DB_XREF=gi:11559957 /GEN=Syt6 /FEA=FLmRNA /CNT=6 /TID=Rn.48074.1 /TIER=FL /STK=2 /UG=Rn.48074 /LL=60565 /DEF=Rattus norvegicus synaptotagmin 6 (Syt6), mRNA. /PROD=synaptotagmin 6 /FL=gb:U20105.1 gb:NM_022191.1 NM_022191 synaptotagmin VI Syt6 60565 NM_022191 0006810 // transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from physical interaction /// 0007340 // acrosome reaction // not recorded 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0019905 // syntaxin binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded 1369047_at NM_021769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021769.1 /DB_XREF=gi:11120723 /GEN=Sult-n /FEA=FLmRNA /CNT=6 /TID=Rn.45325.1 /TIER=FL /STK=2 /UG=Rn.45325 /LL=60393 /DEF=Rattus norvegicus tyrosine-ester sulfotransferase (Sult-n), mRNA. /PROD=tyrosine-ester sulfotransferase /FL=gb:U32372.1 gb:NM_021769.1 NM_021769 sulfotransferase family 1D, member 1 Sult1d1 60393 NM_021769 0000103 // sulfate assimilation // inferred from electronic annotation /// 0000103 // sulfate assimilation // not recorded 0004062 // aryl sulfotransferase activity // inferred from electronic annotation /// 0004062 // aryl sulfotransferase activity // not recorded /// 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017067 // tyrosine-ester sulfotransferase activity // inferred from electronic annotation 1369048_at NM_017289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017289.1 /DB_XREF=gi:8393392 /GEN=Gabrd /FEA=FLmRNA /CNT=6 /TID=Rn.10927.1 /TIER=FL /STK=2 /UG=Rn.10927 /LL=29689 /DEF=Rattus norvegicus gamma-aminobutyric acid (GABA-A) receptor, subunit delta (Gabrd), mRNA. /PROD=gamma-aminobutyric acid (GABA-A) receptor,subunit delta /FL=gb:M35162.1 gb:NM_017289.1 NM_017289 gamma-aminobutyric acid (GABA) A receptor, delta Gabrd 29689 NM_017289 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004890 // GABA-A receptor activity // inferred from direct assay /// 0004890 // GABA-A receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation 1369049_at NM_053885 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053885.1 /DB_XREF=gi:16758755 /GEN=Rere /FEA=FLmRNA /CNT=5 /TID=Rn.10277.1 /TIER=FL /STK=2 /UG=Rn.10277 /LL=116665 /DEF=Rattus norvegicus arginine-glutamic acid dipeptide (RE) repeats (Rere), mRNA. /PROD=arginine-glutamic acid dipeptide (RE) repeats /FL=gb:U44091.1 gb:NM_053885.1 NM_053885 arginine-glutamic acid dipeptide (RE) repeats Rere 116665 NM_053885 0006338 // chromatin remodeling // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0000118 // histone deacetylase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369050_at NM_053923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053923.1 /DB_XREF=gi:16758805 /GEN=Pik3c2g /FEA=FLmRNA /CNT=5 /TID=Rn.14870.1 /TIER=FL /STK=2 /UG=Rn.14870 /LL=116720 /DEF=Rattus norvegicus phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide (Pik3c2g), mRNA. /PROD=phosphatidylinositol 3-kinase, C2 domaincontaining, gamma polypeptide /FL=gb:NM_053923.1 gb:AB009636.1 NM_053923 phosphoinositide-3-kinase, class 2, gamma polypeptide Pik3c2g 116720 NM_053923 0006278 // RNA-dependent DNA replication // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0046854 // phosphoinositide phosphorylation // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation 0005635 // nuclear envelope // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005942 // phosphoinositide 3-kinase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003964 // RNA-directed DNA polymerase activity // inferred from electronic annotation /// 0004428 // inositol or phosphatidylinositol kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0035005 // phosphatidylinositol-4-phosphate 3-kinase activity // inferred from direct assay /// 0035005 // phosphatidylinositol-4-phosphate 3-kinase activity // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1369051_at NM_017071 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017071.1 /DB_XREF=gi:8393620 /GEN=Insr /FEA=FLmRNA /CNT=5 /TID=Rn.9876.1 /TIER=FL /STK=2 /UG=Rn.9876 /LL=24954 /DEF=Rattus norvegicus Insulin receptor (Insr), mRNA. /PROD=insulin receptor /FL=gb:M29014.1 gb:NM_017071.1 NM_017071 insulin receptor Insr 24954 NM_017071 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0001933 // negative regulation of protein phosphorylation // inferred from mutant phenotype /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008286 // insulin receptor signaling pathway // inferred from direct assay /// 0008286 // insulin receptor signaling pathway // inferred from mutant phenotype /// 0008286 // insulin receptor signaling pathway // not recorded /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010042 // response to manganese ion // inferred from expression pattern /// 0010310 // regulation of hydrogen peroxide metabolic process // inferred from direct assay /// 0010560 // positive regulation of glycoprotein biosynthetic process // inferred from mutant phenotype /// 0010629 // negative regulation of gene expression // inferred from mutant phenotype /// 0014823 // response to activity // inferred from expression pattern /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from mutant phenotype /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0019087 // transformation of host cell by virus // inferred from electronic annotation /// 0019087 // transformation of host cell by virus // not recorded /// 0030238 // male sex determination // inferred from electronic annotation /// 0030238 // male sex determination // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0031017 // exocrine pancreas development // inferred from electronic annotation /// 0031017 // exocrine pancreas development // not recorded /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032147 // activation of protein kinase activity // not recorded /// 0032147 // activation of protein kinase activity // inferred from electronic annotation /// 0032148 // activation of protein kinase B activity // inferred from electronic annotation /// 0032148 // activation of protein kinase B activity // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032410 // negative regulation of transporter activity // inferred from mutant phenotype /// 0032583 // regulation of gene-specific transcription // inferred from electronic annotation /// 0032583 // regulation of gene-specific transcription // not recorded /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0033280 // response to vitamin D // inferred from expression pattern /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0034612 // response to tumor necrosis factor // inferred from mutant phenotype /// 0042327 // positive regulation of phosphorylation // inferred from direct assay /// 0042593 // glucose homeostasis // inferred from direct assay /// 0042593 // glucose homeostasis // not recorded /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from electronic annotation /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045429 // positive regulation of nitric oxide biosynthetic process // not recorded /// 0045444 // fat cell differentiation // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0045725 // positive regulation of glycogen biosynthetic process // inferred from electronic annotation /// 0045725 // positive regulation of glycogen biosynthetic process // not recorded /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // not recorded /// 0045821 // positive regulation of glycolysis // inferred from electronic annotation /// 0045821 // positive regulation of glycolysis // not recorded /// 0045840 // positive regulation of mitosis // inferred from electronic annotation /// 0045840 // positive regulation of mitosis // not recorded /// 0045995 // regulation of embryonic development // inferred from electronic annotation /// 0045995 // regulation of embryonic development // not recorded /// 0046326 // positive regulation of glucose import // inferred from electronic annotation /// 0046326 // positive regulation of glucose import // not recorded /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // not recorded /// 0048639 // positive regulation of developmental growth // inferred from electronic annotation /// 0048639 // positive regulation of developmental growth // not recorded /// 0051290 // protein heterotetramerization // inferred from direct assay /// 0051290 // protein heterotetramerization // not recorded /// 0051290 // protein heterotetramerization // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0051897 // positive regulation of protein kinase B signaling cascade // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded /// 0060267 // positive regulation of respiratory burst // inferred from electronic annotation /// 0060267 // positive regulation of respiratory burst // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005899 // insulin receptor complex // inferred from electronic annotation /// 0005899 // insulin receptor complex // not recorded /// 0005901 // caveola // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0010008 // endosome membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004716 // receptor signaling protein tyrosine kinase activity // inferred from electronic annotation /// 0004716 // receptor signaling protein tyrosine kinase activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005009 // insulin receptor activity // inferred from direct assay /// 0005009 // insulin receptor activity // inferred from mutant phenotype /// 0005009 // insulin receptor activity // not recorded /// 0005009 // insulin receptor activity // inferred from electronic annotation /// 0005159 // insulin-like growth factor receptor binding // inferred from electronic annotation /// 0005159 // insulin-like growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019903 // protein phosphatase binding // inferred from mutant phenotype /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0031405 // lipoic acid binding // inferred from physical interaction /// 0031994 // insulin-like growth factor I binding // inferred from electronic annotation /// 0031994 // insulin-like growth factor I binding // not recorded /// 0031995 // insulin-like growth factor II binding // inferred from electronic annotation /// 0031995 // insulin-like growth factor II binding // not recorded /// 0032403 // protein complex binding // inferred from direct assay /// 0042169 // SH2 domain binding // inferred from electronic annotation /// 0042169 // SH2 domain binding // not recorded /// 0043423 // 3-phosphoinositide-dependent protein kinase binding // inferred from direct assay /// 0043548 // phosphoinositide 3-kinase binding // inferred from electronic annotation /// 0043548 // phosphoinositide 3-kinase binding // not recorded /// 0043559 // insulin binding // inferred from direct assay /// 0043559 // insulin binding // inferred from mutant phenotype /// 0043559 // insulin binding // not recorded /// 0043559 // insulin binding // inferred from electronic annotation /// 0043560 // insulin receptor substrate binding // inferred from mutant phenotype /// 0043560 // insulin receptor substrate binding // not recorded /// 0043560 // insulin receptor substrate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051425 // PTB domain binding // inferred from electronic annotation /// 0051425 // PTB domain binding // not recorded 1369052_at NM_133323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133323.1 /DB_XREF=gi:18959273 /GEN=Zfp111 /FEA=FLmRNA /CNT=5 /TID=Rn.10168.1 /TIER=FL /STK=2 /UG=Rn.10168 /LL=170849 /DEF=Rattus norvegicus zinc finger protein 111 (Zfp111), mRNA. /PROD=zinc finger protein 111 /FL=gb:NM_133323.1 gb:U27186.1 NM_133323 zinc finger protein 111 Zfp111 170849 NM_133323 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016481 // negative regulation of transcription // non-traceable author statement 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1369053_at NM_012665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012665.1 /DB_XREF=gi:6981623 /GEN=Syt2 /FEA=FLmRNA /CNT=5 /TID=Rn.10042.1 /TIER=FL /STK=2 /UG=Rn.10042 /LL=24805 /DEF=Rattus norvegicus Synaptotagmin II (Syt2), mRNA. /PROD=synaptotagmin II /FL=gb:M64488.1 gb:NM_012665.1 NM_012665 synaptotagmin II Syt2 24805 NM_012665 0006810 // transport // inferred from electronic annotation /// 0016079 // synaptic vesicle exocytosis // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // not recorded /// 0030672 // synaptic vesicle membrane // traceable author statement /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042584 // chromaffin granule membrane // inferred from electronic annotation /// 0042598 // vesicular fraction // inferred from electronic annotation /// 0042598 // vesicular fraction // not recorded /// 0045202 // synapse // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1369054_at NM_133518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133518.1 /DB_XREF=gi:19424161 /GEN=Rph3a /FEA=FLmRNA /CNT=5 /TID=Rn.10976.1 /TIER=FL /STK=2 /UG=Rn.10976 /LL=171039 /DEF=Rattus norvegicus rabphilin 3A (Rph3a), mRNA. /PROD=rabphilin 3A /FL=gb:U12571.1 gb:NM_133518.1 NM_133518 rabphilin 3A Rph3a 171039 NM_133518 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0015031 // protein transport // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0019898 // extrinsic to membrane // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay /// 0030672 // synaptic vesicle membrane // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005543 // phospholipid binding // traceable author statement /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008430 // selenium binding // inferred from direct assay /// 0017137 // Rab GTPase binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0042301 // phosphate binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070679 // inositol 1,4,5 trisphosphate binding // inferred from direct assay 1369055_at NM_023969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023969.1 /DB_XREF=gi:13095921 /GEN=Edg7 /FEA=FLmRNA /CNT=5 /TID=Rn.64507.1 /TIER=FL /STK=2 /UG=Rn.64507 /LL=66025 /DEF=Rattus norvegicus putative G protein-coupled receptor snGPCR32 (Edg7), mRNA. /PROD=putative G protein-coupled receptor snGPCR32 /FL=gb:AF097733.1 gb:NM_023969.1 NM_023969 lysophosphatidic acid receptor 3 Lpar3 66025 NM_023969 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0032060 // bleb assembly // inferred from electronic annotation /// 0032060 // bleb assembly // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // inferred from direct assay /// 0051928 // positive regulation of calcium ion transport // inferred from mutant phenotype 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001619 // lysosphingolipid and lysophosphatidic acid receptor activity // inferred from direct assay /// 0001619 // lysosphingolipid and lysophosphatidic acid receptor activity // inferred from mutant phenotype /// 0001619 // lysosphingolipid and lysophosphatidic acid receptor activity // not recorded /// 0001619 // lysosphingolipid and lysophosphatidic acid receptor activity // inferred from electronic annotation /// 0001965 // G-protein alpha-subunit binding // inferred from mutant phenotype /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from direct assay /// 0005543 // phospholipid binding // inferred from mutant phenotype 1369056_at NM_053562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053562.1 /DB_XREF=gi:16758331 /GEN=Rpe65 /FEA=FLmRNA /CNT=5 /TID=Rn.76724.1 /TIER=FL /STK=2 /UG=Rn.76724 /LL=89826 /DEF=Rattus norvegicus retinal pigment epithelium, 65 kDa (Rpe65), mRNA. /PROD=retinal pigment epithelium, 65 kDa /FL=gb:AF035673.1 gb:NM_053562.1 NM_053562 retinal pigment epithelium 65 Rpe65 89826 NM_053562 0001654 // eye development // non-traceable author statement /// 0007468 // regulation of rhodopsin gene expression // not recorded /// 0007601 // visual perception // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0008286 // insulin receptor signaling pathway // not recorded /// 0042574 // retinal metabolic process // not recorded /// 0050896 // response to stimulus // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004744 // retinal isomerase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047376 // all-trans-retinyl-palmitate hydrolase activity // inferred from electronic annotation /// 0050251 // retinol isomerase activity // inferred from electronic annotation 1369057_at NM_031126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031126.1 /DB_XREF=gi:13592100 /GEN=Stxbp2 /FEA=FLmRNA /CNT=5 /TID=Rn.10121.1 /TIER=FL /STK=2 /UG=Rn.10121 /LL=81804 /DEF=Rattus norvegicus syntaxin binding protein Munc18-2 (Stxbp2), mRNA. /PROD=syntaxin binding protein Munc18-2 /FL=gb:NM_031126.1 gb:U20283.1 NM_031126 syntaxin binding protein 2 Stxbp2 81804 NM_031126 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // not recorded /// 0006887 // exocytosis // inferred from electronic annotation /// 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation /// 0010447 // response to acidity // inferred from expression pattern /// 0015031 // protein transport // inferred from electronic annotation /// 0016079 // synaptic vesicle exocytosis // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0043304 // regulation of mast cell degranulation // inferred from mutant phenotype /// 0043312 // neutrophil degranulation // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0030027 // lamellipodium // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay /// 0031201 // SNARE complex // not recorded /// 0042581 // specific granule // not recorded /// 0042582 // azurophil granule // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0070820 // tertiary granule // not recorded 0005515 // protein binding // inferred from direct assay /// 0017075 // syntaxin-1 binding // inferred from physical interaction /// 0017075 // syntaxin-1 binding // not recorded /// 0017075 // syntaxin-1 binding // inferred from electronic annotation /// 0030347 // syntaxin-2 binding // inferred from physical interaction /// 0030348 // syntaxin-3 binding // inferred from physical interaction /// 0030348 // syntaxin-3 binding // not recorded /// 0030348 // syntaxin-3 binding // inferred from electronic annotation 1369058_at NM_019122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019122.1 /DB_XREF=gi:9507168 /GEN=Syt3 /FEA=FLmRNA /CNT=5 /TID=Rn.48884.1 /TIER=FL /STK=2 /UG=Rn.48884 /LL=25731 /DEF=Rattus norvegicus Synaptotagmin 3 (Syt3), mRNA. /PROD=synaptotagmin 3 /FL=gb:D28512.1 gb:AF375464.1 gb:NM_019122.1 NM_019122 synaptotagmin III Syt3 25731 NM_019122 0006810 // transport // inferred from electronic annotation /// 0016079 // synaptic vesicle exocytosis // traceable author statement /// 0017156 // calcium ion-dependent exocytosis // traceable author statement 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // non-traceable author statement /// 0045202 // synapse // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005509 // calcium ion binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005544 // calcium-dependent phospholipid binding // inferred from direct assay /// 0019905 // syntaxin binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1369059_at NM_053705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053705.1 /DB_XREF=gi:16758523 /GEN=Chak /FEA=FLmRNA /CNT=5 /TID=Rn.20364.1 /TIER=FL /STK=2 /UG=Rn.20364 /LL=114497 /DEF=Rattus norvegicus transient receptor potential-related protein, ChaK (Chak), mRNA. /PROD=transient receptor potential-related protein,ChaK /FL=gb:NM_053705.1 gb:AF375874.1 NM_053705 transient receptor potential cation channel, subfamily M, member 7 Trpm7 679906 XM_001056331 /// XM_002726172 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0016340 // calcium-dependent cell-matrix adhesion // not recorded /// 0031032 // actomyosin structure organization // not recorded /// 0046777 // protein autophosphorylation // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // not recorded 0001726 // ruffle // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0004672 // protein kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // inferred from direct assay /// 0005262 // calcium channel activity // inferred from direct assay /// 0005262 // calcium channel activity // not recorded /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017022 // myosin binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1369060_a_at NM_053448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053448.1 /DB_XREF=gi:16758191 /GEN=Hdac3 /FEA=FLmRNA /CNT=5 /TID=Rn.17284.1 /TIER=FL /STK=2 /UG=Rn.17284 /LL=84578 /DEF=Rattus norvegicus histone deacetylase 3 (Hdac3), mRNA. /PROD=histone deacetylase 3 /FL=gb:NM_053448.1 gb:AF321131.1 NM_053448 histone deacetylase 3 Hdac3 84578 NM_053448 0006350 // transcription // inferred from electronic annotation /// 0006476 // protein deacetylation // not recorded /// 0006476 // protein deacetylation // inferred from electronic annotation /// 0007346 // regulation of mitotic cell cycle // inferred from electronic annotation /// 0007346 // regulation of mitotic cell cycle // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010832 // negative regulation of myotube differentiation // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016575 // histone deacetylation // inferred from electronic annotation /// 0016575 // histone deacetylation // not recorded /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0032922 // circadian regulation of gene expression // inferred from electronic annotation /// 0032922 // circadian regulation of gene expression // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // not recorded /// 0046329 // negative regulation of JNK cascade // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // not recorded /// 0051225 // spindle assembly // inferred from electronic annotation /// 0051225 // spindle assembly // not recorded 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005876 // spindle microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded /// 0017053 // transcriptional repressor complex // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0004407 // histone deacetylase activity // inferred from electronic annotation /// 0004407 // histone deacetylase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0033558 // protein deacetylase activity // not recorded /// 0033558 // protein deacetylase activity // inferred from electronic annotation /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded 1369061_at NM_053906 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053906.1 /DB_XREF=gi:16758749 /GEN=Gsr /FEA=FLmRNA /CNT=5 /TID=Rn.19721.1 /TIER=FL /STK=2 /UG=Rn.19721 /LL=116686 /DEF=Rattus norvegicus glutathione reductase (Gsr), mRNA. /PROD=glutathione reductase /FL=gb:NM_053906.1 gb:U73174.1 NM_053906 glutathione reductase Gsr 116686 NM_053906 0006749 // glutathione metabolic process // inferred from direct assay /// 0006749 // glutathione metabolic process // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from mutant phenotype /// 0008152 // metabolic process // not recorded /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded 0004362 // glutathione-disulfide reductase activity // inferred from direct assay /// 0004362 // glutathione-disulfide reductase activity // inferred from electronic annotation /// 0004362 // glutathione-disulfide reductase activity // not recorded /// 0004362 // glutathione-disulfide reductase activity // traceable author statement /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043295 // glutathione binding // inferred from direct assay /// 0050660 // FAD or FADH2 binding // inferred from direct assay /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from direct assay /// 0050661 // NADP or NADPH binding // inferred from electronic annotation 1369062_at NM_019317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019317.1 /DB_XREF=gi:9506870 /GEN=Madcam1 /FEA=FLmRNA /CNT=5 /TID=Rn.9906.1 /TIER=FL /STK=2 /UG=Rn.9906 /LL=54266 /DEF=Rattus norvegicus Mucosal vascular addressin cell adhesion molecule 1 (Madcam1), mRNA. /PROD=Mucosal vascular addressin cell adhesionmolecule 1 /FL=gb:NM_019317.1 gb:D87840.1 NM_019317 mucosal vascular addressin cell adhesion molecule 1 Madcam1 54266 NM_019317 0002687 // positive regulation of leukocyte migration // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from direct assay /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0009790 // embryo development // inferred from expression pattern /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1369063_at NM_012903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012903.1 /DB_XREF=gi:6978498 /GEN=Anp32 /FEA=FLmRNA /CNT=5 /TID=Rn.10123.1 /TIER=FL /STK=2 /UG=Rn.10123 /LL=25379 /DEF=Rattus norvegicus Acid nuclear phosphoprotein 32 (leucine rich) (Anp32), mRNA. /PROD=acid nuclear phosphoprotein 32 (leucine rich) /FL=gb:D32209.1 gb:NM_012903.1 NM_012903 acidic (leucine-rich) nuclear phosphoprotein 32 family, member A Anp32a 25379 NM_012903 0006350 // transcription // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // not recorded /// 0006913 // nucleocytoplasmic transport // inferred from sequence or structural similarity /// 0006913 // nucleocytoplasmic transport // traceable author statement /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0016363 // nuclear matrix // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // traceable author statement /// 0050839 // cell adhesion molecule binding // inferred from physical interaction 1369064_a_at NM_019266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019266.1 /DB_XREF=gi:9507066 /GEN=Scn8a /FEA=FLmRNA /CNT=4 /TID=Rn.10073.1 /TIER=FL /STK=2 /UG=Rn.10073 /LL=29710 /DEF=Rattus norvegicus sodium channel, voltage-gated, type VIII, alpha polypeptide (Scn8a), mRNA. /PROD=sodium channel, voltage-gated, type VIII, alphapolypeptide /FL=gb:NM_019266.1 gb:AF049240.1 NM_019266 sodium channel, voltage gated, type VIII, alpha subunit Scn8a 29710 NM_019266 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0007422 // peripheral nervous system development // inferred from expression pattern /// 0007517 // muscle organ development // not recorded /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007628 // adult walking behavior // not recorded /// 0007628 // adult walking behavior // inferred from electronic annotation /// 0009636 // response to toxin // not recorded /// 0019228 // regulation of action potential in neuron // inferred from direct assay /// 0019228 // regulation of action potential in neuron // inferred from mutant phenotype /// 0042552 // myelination // inferred from expression pattern /// 0055085 // transmembrane transport // inferred from electronic annotation 0001518 // voltage-gated sodium channel complex // inferred from direct assay /// 0001518 // voltage-gated sodium channel complex // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0033268 // node of Ranvier // inferred from direct assay /// 0043025 // neuronal cell body // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005248 // voltage-gated sodium channel activity // inferred by curator /// 0005248 // voltage-gated sodium channel activity // inferred from direct assay /// 0005248 // voltage-gated sodium channel activity // inferred from electronic annotation /// 0005248 // voltage-gated sodium channel activity // inferred from mutant phenotype /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0031402 // sodium ion binding // inferred from direct assay 1369065_a_at NM_017290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017290.1 /DB_XREF=gi:8392934 /GEN=Atp2a2 /FEA=FLmRNA /CNT=4 /TID=Rn.2305.1 /TIER=FL /STK=2 /UG=Rn.2305 /LL=29693 /DEF=Rattus norvegicus ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 (Atp2a2), mRNA. /PROD=ATPase, Ca++ transporting, cardiac muscle, slowtwitch 2 /FL=gb:NM_017290.1 gb:J04022.1 NM_017290 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 Atp2a2 29693 NM_001110139 /// NM_001110823 /// NR_027839 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002026 // regulation of the force of heart contraction // not recorded /// 0006200 // ATP catabolic process // not recorded /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006937 // regulation of muscle contraction // traceable author statement /// 0006984 // ER-nucleus signaling pathway // inferred from electronic annotation /// 0006984 // ER-nucleus signaling pathway // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0045822 // negative regulation of heart contraction // inferred from electronic annotation /// 0045822 // negative regulation of heart contraction // not recorded /// 0070588 // calcium ion transmembrane transport // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // not recorded /// 0016529 // sarcoplasmic reticulum // traceable author statement /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0033017 // sarcoplasmic reticulum membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // inferred from direct assay /// 0005388 // calcium-transporting ATPase activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // not recorded /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0031775 // lutropin-choriogonadotropic hormone receptor binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048155 // S100 alpha binding // inferred from electronic annotation /// 0048155 // S100 alpha binding // not recorded 1369066_at NM_053585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053585.1 /DB_XREF=gi:16758359 /GEN=Madd /FEA=FLmRNA /CNT=4 /TID=Rn.6406.1 /TIER=FL /STK=2 /UG=Rn.6406 /LL=94193 /DEF=Rattus norvegicus MAP-kinase activating death domain (Madd), mRNA. /PROD=MAP-kinase activating death domain /FL=gb:U72995.1 gb:NM_053585.1 NM_053585 MAP-kinase activating death domain Madd 94193 NM_053585 0000187 // activation of MAPK activity // not recorded /// 0000187 // activation of MAPK activity // inferred from sequence or structural similarity /// 0006915 // apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from sequence or structural similarity /// 0051726 // regulation of cell cycle // not recorded /// 0051726 // regulation of cell cycle // inferred from sequence or structural similarity 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017112 // Rab guanyl-nucleotide exchange factor activity // not recorded /// 0017112 // Rab guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity 1369067_at NM_031628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031628.1 /DB_XREF=gi:13994172 /GEN=Nr4a3 /FEA=FLmRNA /CNT=4 /TID=Rn.62694.1 /TIER=FL /STK=2 /UG=Rn.62694 /LL=58853 /DEF=Rattus norvegicus nuclear receptor subfamily 4, group A, member 3 (Nr4a3), mRNA. /PROD=nuclear receptor subfamily 4, group A, member 3 /FL=gb:NM_031628.1 gb:D38530.1 NM_031628 nuclear receptor subfamily 4, group A, member 3 Nr4a3 58853 NM_017352 /// NM_031628 0001707 // mesoderm formation // inferred from electronic annotation /// 0001707 // mesoderm formation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0030534 // adult behavior // inferred from electronic annotation /// 0030534 // adult behavior // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0042472 // inner ear morphogenesis // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048752 // semicircular canal morphogenesis // inferred from electronic annotation /// 0048752 // semicircular canal morphogenesis // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0060005 // vestibular reflex // inferred from electronic annotation /// 0060005 // vestibular reflex // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1369068_at NM_022683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022683.1 /DB_XREF=gi:12083628 /GEN=Cul5 /FEA=FLmRNA /CNT=4 /TID=Rn.48797.1 /TIER=FL /STK=2 /UG=Rn.48797 /LL=64624 /DEF=Rattus norvegicus vasopressin-activated calcium-mobilizing receptor protein (Cul5), mRNA. /PROD=vasopressin-activated calcium-mobilizingreceptor protein /FL=gb:NM_022683.1 gb:AF135115.1 NM_022683 cullin 5 Cul5 64624 NM_022683 0000209 // protein polyubiquitination // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006970 // response to osmotic stress // inferred from expression pattern /// 0051480 // cytosolic calcium ion homeostasis // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0031461 // cullin-RING ubiquitin ligase complex // inferred from electronic annotation /// 0031466 // Cul5-RING ubiquitin ligase complex // traceable author statement 0004842 // ubiquitin-protein ligase activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0005000 // vasopressin receptor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation 1369069_at NM_053665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053665.1 /DB_XREF=gi:16758477 /GEN=Akap1 /FEA=FLmRNA /CNT=4 /TID=Rn.30009.1 /TIER=FL /STK=2 /UG=Rn.30009 /LL=114124 /DEF=Rattus norvegicus A kinase (PRKA) anchor protein 1 (Akap1), mRNA. /PROD=A kinase (PRKA) anchor protein 1 /FL=gb:AF068202.1 gb:NM_053665.1 NM_053665 A kinase (PRKA) anchor protein 1 Akap1 114124 NM_053665 0010614 // negative regulation of cardiac muscle hypertrophy // inferred from mutant phenotype /// 0010738 // regulation of protein kinase A signaling cascade // inferred by curator /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0035308 // negative regulation of protein dephosphorylation // inferred from mutant phenotype /// 0051534 // negative regulation of NFAT protein import into nucleus // inferred from mutant phenotype /// 0070887 // cellular response to chemical stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005811 // lipid particle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030061 // mitochondrial crista // inferred from direct assay /// 0031594 // neuromuscular junction // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from direct assay /// 0019903 // protein phosphatase binding // inferred from direct assay /// 0019904 // protein domain specific binding // inferred from mutant phenotype /// 0030346 // protein phosphatase 2B binding // inferred from direct assay /// 0032947 // protein complex scaffold // inferred from direct assay /// 0034237 // protein kinase A regulatory subunit binding // inferred from direct assay /// 0048487 // beta-tubulin binding // inferred from direct assay 1369070_at NM_053921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053921.1 /DB_XREF=gi:16758801 /GEN=Pex12 /FEA=FLmRNA /CNT=4 /TID=Rn.29982.1 /TIER=FL /STK=2 /UG=Rn.29982 /LL=116718 /DEF=Rattus norvegicus peroxisomal biogenesis factor 12 (Pex12), mRNA. /PROD=peroxisomal biogenesis factor 12 /FL=gb:NM_053921.1 gb:AB002111.1 NM_053921 peroxisomal biogenesis factor 12 Pex12 116718 NM_053921 0006810 // transport // inferred from electronic annotation /// 0007031 // peroxisome organization // inferred from mutant phenotype /// 0007031 // peroxisome organization // not recorded /// 0007031 // peroxisome organization // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016558 // protein import into peroxisome matrix // inferred from electronic annotation /// 0016558 // protein import into peroxisome matrix // not recorded 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // not recorded /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0005779 // integral to peroxisomal membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1369071_at NM_017301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017301.1 /DB_XREF=gi:8393289 /GEN=Edg1 /FEA=FLmRNA /CNT=4 /TID=Rn.4102.1 /TIER=FL /STK=2 /UG=Rn.4102 /LL=29733 /DEF=Rattus norvegicus endothelial differentiation sphingolipid G-protein-coupled receptor 1 (Edg1), mRNA. /PROD=endothelial differentiation sphingolipidG-protein-coupled receptor 1 /FL=gb:U10303.1 gb:NM_017301.1 NM_017301 sphingosine-1-phosphate receptor 1 S1pr1 29733 NM_017301 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // traceable author statement /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // inferred from mutant phenotype /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0019226 // transmission of nerve impulse // inferred from expression pattern /// 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0030155 // regulation of cell adhesion // not recorded /// 0030182 // neuron differentiation // inferred from expression pattern /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0032320 // positive regulation of Ras GTPase activity // inferred from direct assay /// 0045446 // endothelial cell differentiation // inferred from expression pattern /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from direct assay /// 0050927 // positive regulation of positive chemotaxis // inferred from direct assay /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // inferred from mutant phenotype /// 0051497 // negative regulation of stress fiber assembly // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001619 // lysosphingolipid and lysophosphatidic acid receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from mutant phenotype /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0046625 // sphingolipid binding // inferred from direct assay 1369072_at NM_134329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134329.1 /DB_XREF=gi:19705434 /GEN=Adh7 /FEA=FLmRNA /CNT=4 /TID=Rn.42935.1 /TIER=FL /STK=2 /UG=Rn.42935 /LL=171178 /DEF=Rattus norvegicus alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide (Adh7), mRNA. /PROD=alcohol dehydrogenase 7 (class IV), mu or sigmapolypeptide /FL=gb:NM_134329.1 NM_134329 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide Adh7 171178 NM_134329 0001523 // retinoid metabolic process // not recorded /// 0001523 // retinoid metabolic process // traceable author statement /// 0006067 // ethanol metabolic process // inferred from direct assay /// 0006068 // ethanol catabolic process // inferred from electronic annotation /// 0006068 // ethanol catabolic process // not recorded /// 0006069 // ethanol oxidation // not recorded /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0010430 // fatty acid omega-oxidation // not recorded /// 0042572 // retinol metabolic process // inferred from direct assay /// 0042572 // retinol metabolic process // not recorded /// 0042572 // retinol metabolic process // inferred from electronic annotation /// 0042573 // retinoic acid metabolic process // inferred from electronic annotation /// 0042573 // retinoic acid metabolic process // not recorded /// 0045471 // response to ethanol // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004022 // alcohol dehydrogenase (NAD) activity // inferred from direct assay /// 0004022 // alcohol dehydrogenase (NAD) activity // not recorded /// 0004022 // alcohol dehydrogenase (NAD) activity // traceable author statement /// 0004022 // alcohol dehydrogenase (NAD) activity // inferred from electronic annotation /// 0004024 // alcohol dehydrogenase activity, zinc-dependent // not recorded /// 0004031 // aldehyde oxidase activity // not recorded /// 0004745 // retinol dehydrogenase activity // inferred from electronic annotation /// 0004745 // retinol dehydrogenase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0019841 // retinol binding // inferred from direct assay /// 0019841 // retinol binding // not recorded /// 0035276 // ethanol binding // inferred from direct assay /// 0035276 // ethanol binding // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048019 // receptor antagonist activity // not recorded /// 0051287 // NAD or NADH binding // inferred from direct assay 1369073_at NM_021745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021745.1 /DB_XREF=gi:11120689 /GEN=Nr1h4 /FEA=FLmRNA /CNT=4 /TID=Rn.42943.1 /TIER=FL /STK=2 /UG=Rn.42943 /LL=60351 /DEF=Rattus norvegicus nuclear receptor subfamily 1, group H, member 4 (Nr1h4), mRNA. /PROD=farnesoid X activated receptor /FL=gb:NM_021745.1 gb:U18374.1 NM_021745 nuclear receptor subfamily 1, group H, member 4 Nr1h4 60351 NM_021745 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006109 // regulation of carbohydrate metabolic process // inferred from mutant phenotype /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0008206 // bile acid metabolic process // inferred from direct assay /// 0008206 // bile acid metabolic process // not recorded /// 0008206 // bile acid metabolic process // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048565 // digestive tract development // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003707 // steroid hormone receptor activity // inferred from direct assay /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from direct assay /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from mutant phenotype /// 0032052 // bile acid binding // inferred from direct assay /// 0042277 // peptide binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // not recorded 1369074_at NM_130748 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130748.1 /DB_XREF=gi:18543356 /GEN=Ata3 /FEA=FLmRNA /CNT=4 /TID=Rn.17990.1 /TIER=FL /STK=2 /UG=Rn.17990 /LL=170573 /DEF=Rattus norvegicus amino acid transport system A3 (Ata3), mRNA. /PROD=amino acid transport system A3 /FL=gb:AF295535.1 gb:NM_130748.1 NM_130748 solute carrier family 38, member 4 Slc38a4 170573 NM_130748 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0015171 // amino acid transmembrane transporter activity // inferred from direct assay /// 0015171 // amino acid transmembrane transporter activity // not recorded /// 0015293 // symporter activity // inferred from electronic annotation 1369075_a_at NM_031803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031803.1 /DB_XREF=gi:13929139 /GEN=Gmeb2 /FEA=FLmRNA /CNT=4 /TID=Rn.8576.1 /TIER=FL /STK=2 /UG=Rn.8576 /LL=83635 /DEF=Rattus norvegicus glucocorticoid modulatory element binding protein 2 (Gmeb2), mRNA. /PROD=glucocorticoid modulatory element bindingprotein 2 /FL=gb:AF059273.1 gb:NM_031803.1 NM_031803 glucocorticoid modulatory element binding protein 2 Gmeb2 83635 NM_031803 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369076_at NM_021671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021671.1 /DB_XREF=gi:11067390 /GEN=LOC59303 /FEA=FLmRNA /CNT=4 /TID=Rn.21606.1 /TIER=FL /STK=2 /UG=Rn.21606 /LL=59303 /DEF=Rattus norvegicus db83 (LOC59303), mRNA. /PROD=db83 /FL=gb:NM_021671.1 gb:AB006135.1 NM_021671 transmembrane protein 33 Tmem33 59303 NM_001034198 /// NM_021671 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0042470 // melanosome // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369077_at NM_053407 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053407.1 /DB_XREF=gi:16758139 /GEN=Asah /FEA=FLmRNA /CNT=4 /TID=Rn.64638.1 /TIER=FL /STK=2 /UG=Rn.64638 /LL=84431 /DEF=Rattus norvegicus N-acylsphingosine amidohydrolase (acid ceramidase) (Asah), mRNA. /PROD=N-acylsphingosine amidohydrolase (acidceramidase) /FL=gb:AF214647.1 gb:NM_053407.1 NM_053407 N-acylsphingosine amidohydrolase (acid ceramidase) 1 Asah1 84431 NM_053407 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0010033 // response to organic substance // inferred from direct assay /// 0030324 // lung development // inferred from direct assay 0005764 // lysosome // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation /// 0017040 // ceramidase activity // inferred from electronic annotation /// 0017040 // ceramidase activity // not recorded 1369078_at NM_053842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053842.1 /DB_XREF=gi:16758697 /GEN=Mapk1 /FEA=FLmRNA /CNT=4 /TID=Rn.34914.1 /TIER=FL /STK=2 /UG=Rn.34914 /LL=116590 /DEF=Rattus norvegicus mitogen activated protein kinase 1 (Mapk1), mRNA. /PROD=mitogen activated protein kinase 1 /FL=gb:NM_053842.1 gb:M64300.1 NM_053842 mitogen activated protein kinase 1 Mapk1 116590 NM_053842 0000165 // MAPKKK cascade // inferred from mutant phenotype /// 0000165 // MAPKKK cascade // not recorded /// 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000189 // nuclear translocation of MAPK // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // traceable author statement /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // inferred from direct assay /// 0007165 // signal transduction // not recorded /// 0007243 // intracellular protein kinase cascade // traceable author statement /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from expression pattern /// 0009636 // response to toxin // inferred from direct assay /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0016310 // phosphorylation // not recorded /// 0019233 // sensory perception of pain // inferred from mutant phenotype /// 0019858 // cytosine metabolic process // inferred from electronic annotation /// 0019858 // cytosine metabolic process // not recorded /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0030335 // positive regulation of cell migration // inferred from expression pattern /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0031663 // lipopolysaccharide-mediated signaling pathway // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0042221 // response to chemical stimulus // inferred from direct assay /// 0043330 // response to exogenous dsRNA // inferred from electronic annotation /// 0043330 // response to exogenous dsRNA // not recorded /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045727 // positive regulation of translation // inferred from mutant phenotype /// 0045941 // positive regulation of transcription // inferred from expression pattern /// 0050852 // T cell receptor signaling pathway // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // not recorded /// 0050853 // B cell receptor signaling pathway // inferred from electronic annotation /// 0050853 // B cell receptor signaling pathway // not recorded /// 0060716 // labyrinthine layer blood vessel development // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded /// 0032839 // dendrite cytoplasm // inferred from direct assay /// 0033267 // axon part // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001784 // phosphotyrosine binding // inferred from electronic annotation /// 0001784 // phosphotyrosine binding // not recorded /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred by curator /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004707 // MAP kinase activity // inferred from direct assay /// 0004707 // MAP kinase activity // inferred from electronic annotation /// 0004707 // MAP kinase activity // not recorded /// 0004707 // MAP kinase activity // traceable author statement /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from electronic annotation /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // not recorded /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from physical interaction 1369079_at NM_012994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012994.1 /DB_XREF=gi:6981297 /GEN=Nxph1 /FEA=FLmRNA /CNT=4 /TID=Rn.10610.1 /TIER=FL /STK=2 /UG=Rn.10610 /LL=25501 /DEF=Rattus norvegicus Neurexophilin 1 (Nxph1), mRNA. /PROD=neurexophilin 1 /FL=gb:L27867.1 gb:NM_012994.1 NM_012994 neurexophilin 1 Nxph1 25501 NM_012994 0005576 // extracellular region // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded 1369080_at NM_013021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013021.1 /DB_XREF=gi:6981467 /GEN=Rds /FEA=FLmRNA /CNT=4 /TID=Rn.48882.1 /TIER=FL /STK=2 /UG=Rn.48882 /LL=25534 /DEF=Rattus norvegicus Peripherin (retinal degradation slow) (Rds), mRNA. /PROD=peripherin (retinal degradation slow) /FL=gb:NM_013021.1 NM_013021 peripherin 2 Prph2 25534 NM_013021 0007155 // cell adhesion // inferred from electronic annotation /// 0007601 // visual perception // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1369081_at NM_031522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031522.1 /DB_XREF=gi:13928707 /GEN=Neu1 /FEA=FLmRNA /CNT=4 /TID=Rn.36634.1 /TIER=FL /STK=2 /UG=Rn.36634 /LL=24591 /DEF=Rattus norvegicus Neuraminidase 1 (Neu1), mRNA. /PROD=neuraminidase 1 /FL=gb:NM_031522.1 gb:AB035722.1 NM_031522 sialidase 1 (lysosomal sialidase) Neu1 24591 NM_031522 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043202 // lysosomal lumen // inferred from electronic annotation 0004308 // exo-alpha-sialidase activity // inferred from electronic annotation /// 0004308 // exo-alpha-sialidase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation 1369082_at NM_053679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053679.1 /DB_XREF=gi:16758491 /GEN=Dffa /FEA=FLmRNA /CNT=4 /TID=Rn.48799.1 /TIER=FL /STK=2 /UG=Rn.48799 /LL=114214 /DEF=Rattus norvegicus DNA fragmentation factor, alpha subunit (Dffa), mRNA. /PROD=DNA fragmentation factor, alpha subunit /FL=gb:NM_053679.1 gb:AF136601.1 NM_053679 DNA fragmentation factor, alpha subunit Dffa 114214 NM_053679 0006309 // DNA fragmentation involved in apoptotic nuclear change // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1369083_at NM_031147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031147.1 /DB_XREF=gi:13592138 /GEN=Cirbp /FEA=FLmRNA /CNT=4 /TID=Rn.28931.1 /TIER=FL /STK=2 /UG=Rn.28931 /LL=81825 /DEF=Rattus norvegicus cold inducible RNA-binding protein (Cirbp), mRNA. /PROD=cold inducible RNA-binding protein /FL=gb:AB000362.1 gb:NM_031147.1 NM_031147 cold inducible RNA binding protein Cirbp 81825 NM_031147 0006950 // response to stress // inferred from electronic annotation /// 0009409 // response to cold // inferred from expression pattern /// 0009411 // response to UV // not recorded /// 0009411 // response to UV // inferred from sequence or structural similarity /// 0017148 // negative regulation of translation // not recorded /// 0034063 // stress granule assembly // inferred from electronic annotation /// 0034063 // stress granule assembly // not recorded /// 0034063 // stress granule assembly // inferred from sequence or structural similarity /// 0045727 // positive regulation of translation // not recorded /// 0045727 // positive regulation of translation // inferred from sequence or structural similarity /// 0048255 // mRNA stabilization // not recorded /// 0048255 // mRNA stabilization // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0010494 // stress granule // inferred from electronic annotation /// 0010494 // stress granule // not recorded /// 0010494 // stress granule // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // not recorded /// 0003730 // mRNA 3'-UTR binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0030371 // translation repressor activity // inferred from electronic annotation /// 0030371 // translation repressor activity // not recorded /// 0030371 // translation repressor activity // inferred from sequence or structural similarity /// 0070181 // SSU rRNA binding // not recorded /// 0070181 // SSU rRNA binding // inferred from sequence or structural similarity 1369084_a_at AF051093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF051093.1 /DB_XREF=gi:3676402 /GEN=Bok /FEA=FLmRNA /CNT=1 /TID=Rn.44461.2 /TIER=FL /STK=1 /UG=Rn.44461 /LL=29884 /DEF=Rattus norvegicus Bcl-2-related ovarian killer protein (Bok) mRNA, alternatively spliced variant, complete cds. /PROD=Bcl-2-related ovarian killer protein /FL=gb:AF051093.1 AF051093 BCL2-related ovarian killer Bok 29884 NM_017312 0006915 // apoptosis // inferred from direct assay /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from direct assay 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046983 // protein dimerization activity // inferred from physical interaction /// 0051400 // BH domain binding // inferred from physical interaction 1369085_s_at NM_130738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130738.1 /DB_XREF=gi:18543338 /GEN=Snurf /FEA=FLmRNA /CNT=4 /TID=Rn.81238.1 /TIER=FL /STK=2 /UG=Rn.81238 /LL=113938 /DEF=Rattus norvegicus SNRPN upstream reading frame (Snurf), mRNA. /PROD=SNRPN upstream reading frame /FL=gb:NM_130738.1 gb:AF101041.1 NM_130738 small nuclear ribonucleoprotein polypeptide N /// SNRPN upstream reading frame Snrpn /// Snurf 113938 /// 81781 NM_031117 /// NM_130738 0009725 // response to hormone stimulus // inferred from expression pattern 0005634 // nucleus // inferred from expression pattern /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005685 // U1 snRNP // inferred from direct assay /// 0005686 // U2 snRNP // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1369086_a_at NM_017298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017298.1 /DB_XREF=gi:8393029 /GEN=Cacna1d /FEA=FLmRNA /CNT=5 /TID=Rn.30066.1 /TIER=FL /STK=2 /UG=Rn.30066 /LL=29716 /DEF=Rattus norvegicus calcium channel, voltage-dependent, L type, alpha 1D subunit (Cacna1d), mRNA. /PROD=calcium channel, voltage-dependent, L type,alpha 1D subunit /FL=gb:NM_017298.1 gb:D38101.1 NM_017298 calcium channel, voltage-dependent, L type, alpha 1D subunit Cacna1d 29716 NM_017298 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // not recorded /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007613 // memory // inferred from expression pattern /// 0019722 // calcium-mediated signaling // inferred from direct assay /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // not recorded 0005886 // plasma membrane // not recorded /// 0005891 // voltage-gated calcium channel complex // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // not recorded /// 0005891 // voltage-gated calcium channel complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from direct assay /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // not recorded /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008331 // high voltage-gated calcium channel activity // not recorded /// 0008331 // high voltage-gated calcium channel activity // inferred from electronic annotation 1369087_at NM_019306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019306.1 /DB_XREF=gi:11276092 /GEN=Flt1 /FEA=FLmRNA /CNT=5 /TID=Rn.10239.1 /TIER=FL /STK=2 /UG=Rn.10239 /LL=54251 /DEF=Rattus norvegicus Fms-related tyrosine kinase 1 (vascular endothelial growth factorvascular permeability factor receptor) (Flt1), mRNA. /PROD=Fms-related tyrosine kinase 1 (vascularendothelial growth factorvascular permeability factorreceptor) /FL=gb:D28498.1 gb:NM_019306.1 NM_019306 fms-related tyrosine kinase 1 Flt1 54251 NM_019306 0000186 // activation of MAPKK activity // inferred from mutant phenotype /// 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001666 // response to hypoxia // inferred from direct assay /// 0002040 // sprouting angiogenesis // inferred from electronic annotation /// 0002040 // sprouting angiogenesis // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006940 // regulation of smooth muscle contraction // inferred from direct assay /// 0007165 // signal transduction // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // traceable author statement /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from expression pattern /// 0016310 // phosphorylation // not recorded /// 0016477 // cell migration // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030522 // intracellular receptor mediated signaling pathway // inferred from mutant phenotype /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0048010 // vascular endothelial growth factor receptor signaling pathway // not recorded /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // inferred from direct assay /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from direct assay /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004716 // receptor signaling protein tyrosine kinase activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0005021 // vascular endothelial growth factor receptor activity // inferred from mutant phenotype /// 0005021 // vascular endothelial growth factor receptor activity // not recorded /// 0005021 // vascular endothelial growth factor receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from physical interaction /// 0019838 // growth factor binding // not recorded /// 0019838 // growth factor binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1369088_at NM_017218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017218.2 /DB_XREF=gi:17432903 /GEN=Erbb3 /FEA=FLmRNA /CNT=5 /TID=Rn.10228.1 /TIER=FL /STK=2 /UG=Rn.10228 /LL=29496 /DEF=Rattus norvegicus avian erythroblastosis oncogene B 3 (Erbb3), mRNA. /PROD=avian erythroblastosis oncogene B 3 /FL=gb:U29339.2 gb:NM_017218.2 NM_017218 v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian) Erbb3 29496 NM_017218 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007162 // negative regulation of cell adhesion // inferred from electronic annotation /// 0007162 // negative regulation of cell adhesion // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // traceable author statement /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from expression pattern /// 0007422 // peripheral nervous system development // not recorded /// 0007422 // peripheral nervous system development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007519 // skeletal muscle tissue development // inferred from expression pattern /// 0007623 // circadian rhythm // inferred from expression pattern /// 0009611 // response to wounding // inferred from expression pattern /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0009968 // negative regulation of signal transduction // not recorded /// 0014037 // Schwann cell differentiation // inferred from electronic annotation /// 0014037 // Schwann cell differentiation // not recorded /// 0014065 // phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014065 // phosphoinositide 3-kinase cascade // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0021545 // cranial nerve development // inferred from electronic annotation /// 0021545 // cranial nerve development // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042476 // odontogenesis // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043586 // tongue development // inferred from expression pattern /// 0046326 // positive regulation of glucose import // inferred from mutant phenotype /// 0051048 // negative regulation of secretion // inferred from electronic annotation /// 0051048 // negative regulation of secretion // not recorded /// 0051402 // neuron apoptosis // not recorded /// 0051402 // neuron apoptosis // inferred from electronic annotation /// 0060056 // mammary gland involution // inferred from expression pattern 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0016328 // lateral plasma membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // not recorded /// 0045211 // postsynaptic membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // traceable author statement /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004716 // receptor signaling protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded /// 0030296 // protein tyrosine kinase activator activity // inferred from electronic annotation /// 0030296 // protein tyrosine kinase activator activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1369089_at NM_012628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012628.1 /DB_XREF=gi:6981399 /GEN=Prkcg /FEA=FLmRNA /CNT=5 /TID=Rn.9747.1 /TIER=FL /STK=2 /UG=Rn.9747 /LL=24681 /DEF=Rattus norvegicus Protein kinase C, type I (gamma type) (Prkcg), mRNA. /PROD=protein kinase C, type I (gamma type) /FL=gb:NM_012628.1 NM_012628 protein kinase C, gamma Prkcg 24681 NM_012628 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007268 // synaptic transmission // non-traceable author statement /// 0007611 // learning or memory // inferred from expression pattern /// 0007635 // chemosensory behavior // inferred from electronic annotation /// 0007635 // chemosensory behavior // not recorded /// 0016310 // phosphorylation // not recorded /// 0016310 // phosphorylation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // non-traceable author statement /// 0031397 // negative regulation of protein ubiquitination // inferred from electronic annotation /// 0031397 // negative regulation of protein ubiquitination // not recorded /// 0032425 // positive regulation of mismatch repair // inferred from electronic annotation /// 0032425 // positive regulation of mismatch repair // not recorded /// 0042177 // negative regulation of protein catabolic process // inferred from electronic annotation /// 0042177 // negative regulation of protein catabolic process // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0019717 // synaptosome // inferred from direct assay /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004697 // protein kinase C activity // inferred from direct assay /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369090_at NM_013012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013012.1 /DB_XREF=gi:6981401 /GEN=Prkg2 /FEA=FLmRNA /CNT=5 /TID=Rn.10443.1 /TIER=FL /STK=2 /UG=Rn.10443 /LL=25523 /DEF=Rattus norvegicus cGMP dependent protein kinase type II (Prkg2), mRNA. /PROD=cGMP dependent protein kinase type II /FL=gb:NM_013012.1 NM_013012 protein kinase, cGMP-dependent, type II Prkg2 25523 NM_013012 0006468 // protein phosphorylation // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004692 // cGMP-dependent protein kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030553 // cGMP binding // inferred from electronic annotation 1369091_at NM_012528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012528.1 /DB_XREF=gi:6978656 /GEN=Chrnb1 /FEA=FLmRNA /CNT=5 /TID=Rn.44611.1 /TIER=FL /STK=2 /UG=Rn.44611 /LL=24261 /DEF=Rattus norvegicus Acetylcholine receptor beta (Chrnb1), mRNA. /PROD=acetylcholine receptor beta /FL=gb:NM_012528.1 NM_012528 cholinergic receptor, nicotinic, beta 1 (muscle) Chrnb1 24261 NM_012528 0001941 // postsynaptic membrane organization // inferred from electronic annotation /// 0001941 // postsynaptic membrane organization // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006936 // muscle contraction // inferred from electronic annotation /// 0006936 // muscle contraction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007271 // synaptic transmission, cholinergic // inferred from electronic annotation /// 0007271 // synaptic transmission, cholinergic // not recorded /// 0007274 // neuromuscular synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0035095 // behavioral response to nicotine // inferred from electronic annotation /// 0035095 // behavioral response to nicotine // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded /// 0048747 // muscle fiber development // inferred from electronic annotation /// 0048747 // muscle fiber development // not recorded /// 0050877 // neurological system process // inferred from electronic annotation /// 0050877 // neurological system process // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from mutant phenotype /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // not recorded /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from direct assay /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // not recorded /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015267 // channel activity // inferred from electronic annotation /// 0015267 // channel activity // not recorded /// 0015276 // ligand-gated ion channel activity // inferred from direct assay /// 0015464 // acetylcholine receptor activity // inferred from electronic annotation /// 0015464 // acetylcholine receptor activity // not recorded /// 0042166 // acetylcholine binding // not recorded /// 0042166 // acetylcholine binding // inferred from electronic annotation 1369092_at NM_057147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057147.1 /DB_XREF=gi:16924007 /GEN=Sec22a /FEA=FLmRNA /CNT=5 /TID=Rn.34191.1 /TIER=FL /STK=2 /UG=Rn.34191 /LL=117513 /DEF=Rattus norvegicus sec22 homolog (Sec22a), mRNA. /PROD=sec22 homolog /FL=gb:NM_057147.1 gb:U42209.1 NM_057147 SEC22 vesicle trafficking protein homolog A (S. cerevisiae) Sec22a 117513 NM_057147 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 1369093_at NM_080394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080394.1 /DB_XREF=gi:17939401 /GEN=Reln /FEA=FLmRNA /CNT=4 /TID=Rn.59758.1 /TIER=FL /STK=2 /UG=Rn.59758 /LL=24718 /DEF=Rattus norvegicus Reelin (Reln), mRNA. /PROD=reelin /FL=gb:NM_080394.1 gb:AB049473.1 NM_080394 reelin Reln 24718 NM_080394 0000904 // cell morphogenesis involved in differentiation // not recorded /// 0000904 // cell morphogenesis involved in differentiation // inferred from sequence or structural similarity /// 0001764 // neuron migration // inferred from mutant phenotype /// 0001764 // neuron migration // not recorded /// 0001764 // neuron migration // inferred from sequence or structural similarity /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from sequence or structural similarity /// 0007417 // central nervous system development // not recorded /// 0007417 // central nervous system development // inferred from sequence or structural similarity /// 0007420 // brain development // inferred from mutant phenotype /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from sequence or structural similarity /// 0007494 // midgut development // inferred from expression pattern /// 0007613 // memory // inferred from expression pattern /// 0007626 // locomotory behavior // inferred from mutant phenotype /// 0007626 // locomotory behavior // not recorded /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009636 // response to toxin // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0010001 // glial cell differentiation // not recorded /// 0010001 // glial cell differentiation // inferred from sequence or structural similarity /// 0010226 // response to lithium ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0017085 // response to insecticide // inferred from expression pattern /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from sequence or structural similarity /// 0021511 // spinal cord patterning // inferred from expression pattern /// 0021511 // spinal cord patterning // not recorded /// 0021511 // spinal cord patterning // inferred from sequence or structural similarity /// 0021542 // dentate gyrus development // inferred from mutant phenotype /// 0021769 // orbitofrontal cortex development // inferred from expression pattern /// 0021800 // cerebral cortex tangential migration // not recorded /// 0021800 // cerebral cortex tangential migration // inferred from sequence or structural similarity /// 0021854 // hypothalamus development // inferred from expression pattern /// 0021987 // cerebral cortex development // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0035176 // social behavior // inferred from expression pattern /// 0042403 // thyroid hormone metabolic process // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from sequence or structural similarity /// 0048265 // response to pain // not recorded /// 0048265 // response to pain // inferred from sequence or structural similarity /// 0048678 // response to axon injury // inferred from expression pattern /// 0051057 // positive regulation of small GTPase mediated signal transduction // not recorded /// 0051057 // positive regulation of small GTPase mediated signal transduction // inferred from sequence or structural similarity /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0051602 // response to electrical stimulus // inferred from expression pattern /// 0070542 // response to fatty acid // inferred from expression pattern /// 0071549 // cellular response to dexamethasone stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030425 // dendrite // not recorded /// 0030425 // dendrite // inferred from sequence or structural similarity /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay 0004712 // protein serine/threonine/tyrosine kinase activity // not recorded /// 0004712 // protein serine/threonine/tyrosine kinase activity // inferred from sequence or structural similarity /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369094_a_at NM_019140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019140.1 /DB_XREF=gi:9507010 /GEN=Ptprd /FEA=FLmRNA /CNT=4 /TID=Rn.25722.1 /TIER=FL /STK=2 /UG=Rn.25722 /LL=25529 /DEF=Rattus norvegicus Protein tyrosine phosphatase, receptor type, D (Ptprd), mRNA. /PROD=protein tyrosine phosphatase, receptor type, D /FL=gb:NM_019140.1 gb:L11587.1 NM_019140 protein tyrosine phosphatase, receptor type, S Ptprs 25529 NM_019140 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1369095_at NM_053473 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053473.1 /DB_XREF=gi:16758223 /GEN=LOC84685 /FEA=FLmRNA /CNT=4 /TID=Rn.10849.1 /TIER=FL /STK=2 /UG=Rn.10849 /LL=84685 /DEF=Rattus norvegicus actin-binding protein neurabin (LOC84685), mRNA. /PROD=actin-binding protein neurabin /FL=gb:U72994.1 gb:NM_053473.1 NM_053473 protein phosphatase 1, regulatory (inhibitor) subunit 9A Ppp1r9a 84685 NM_053473 0007015 // actin filament organization // inferred from electronic annotation /// 0007015 // actin filament organization // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030175 // filopodium // inferred from electronic annotation /// 0030175 // filopodium // not recorded /// 0030426 // growth cone // inferred from direct assay /// 0030864 // cortical actin cytoskeleton // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // not recorded /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043197 // dendritic spine // not recorded /// 0045202 // synapse // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369096_at NM_134331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134331.1 /DB_XREF=gi:19705436 /GEN=Epha7 /FEA=FLmRNA /CNT=4 /TID=Rn.10181.1 /TIER=FL /STK=2 /UG=Rn.10181 /LL=171287 /DEF=Rattus norvegicus EphA7 (Epha7), mRNA. /PROD=EphA7 /FL=gb:NM_134331.1 gb:U21954.1 NM_134331 Eph receptor A7 Epha7 171287 NM_134331 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from direct assay /// 0031290 // retinal ganglion cell axon guidance // inferred from electronic annotation /// 0031290 // retinal ganglion cell axon guidance // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043525 // positive regulation of neuron apoptosis // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptosis // not recorded /// 0048755 // branching morphogenesis of a nerve // inferred from electronic annotation /// 0048755 // branching morphogenesis of a nerve // not recorded /// 0050919 // negative chemotaxis // not recorded 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0031594 // neuromuscular junction // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005003 // ephrin receptor activity // non-traceable author statement /// 0005003 // ephrin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0045499 // chemorepellent activity // inferred from electronic annotation /// 0045499 // chemorepellent activity // not recorded /// 0046875 // ephrin receptor binding // inferred from direct assay 1369097_s_at NM_012769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012769.1 /DB_XREF=gi:6980995 /GEN=Gucy1b3 /FEA=FLmRNA /CNT=4 /TID=Rn.37529.1 /TIER=FL /STK=2 /UG=Rn.37529 /LL=25202 /DEF=Rattus norvegicus Guanylate cyclase, soluble, beta 1, (GTP pyrophosphate - lyase) (Gucy1b3), mRNA. /PROD=guanylate cyclase, soluble, beta 1, (GTPpyrophosphate - lyase) see also D2Mgh17 /FL=gb:NM_012769.1 gb:M22562.1 NM_012769 guanylate cyclase 1, soluble, beta 3 Gucy1b3 25202 NM_012769 0006182 // cGMP biosynthetic process // inferred from direct assay /// 0006182 // cGMP biosynthetic process // inferred from electronic annotation /// 0007263 // nitric oxide mediated signal transduction // inferred from direct assay /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0008074 // guanylate cyclase complex, soluble // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // inferred from direct assay /// 0004383 // guanylate cyclase activity // traceable author statement /// 0004383 // guanylate cyclase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from direct assay /// 0020037 // heme binding // inferred from electronic annotation /// 0043167 // ion binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0051879 // Hsp90 protein binding // inferred from direct assay 1369098_at NM_013155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013155.1 /DB_XREF=gi:6981705 /GEN=Vldlr /FEA=FLmRNA /CNT=4 /TID=Rn.9975.1 /TIER=FL /STK=2 /UG=Rn.9975 /LL=25696 /DEF=Rattus norvegicus Very low density lipoprotein receptor (Vldlr), mRNA. /PROD=very low density lipoprotein receptor /FL=gb:NM_013155.1 gb:L35767.1 NM_013155 very low density lipoprotein receptor Vldlr 25696 NM_013155 0001666 // response to hypoxia // inferred from expression pattern /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // traceable author statement /// 0007507 // heart development // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0021987 // cerebral cortex development // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0034447 // very-low-density lipoprotein particle clearance // not recorded /// 0034447 // very-low-density lipoprotein particle clearance // inferred from sequence or structural similarity /// 0034447 // very-low-density lipoprotein particle clearance // inferred from electronic annotation /// 0042149 // cellular response to glucose starvation // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0071222 // cellular response to lipopolysaccharide // inferred from expression pattern /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from direct assay 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005905 // coated pit // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0034361 // very-low-density lipoprotein particle // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030229 // very-low-density lipoprotein receptor activity // not recorded /// 0030229 // very-low-density lipoprotein receptor activity // inferred from sequence or structural similarity /// 0030229 // very-low-density lipoprotein receptor activity // inferred from electronic annotation /// 0030296 // protein tyrosine kinase activator activity // traceable author statement 1369099_at NM_022853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022853.1 /DB_XREF=gi:12408301 /GEN=Slc30a1 /FEA=FLmRNA /CNT=4 /TID=Rn.10120.1 /TIER=FL /STK=2 /UG=Rn.10120 /LL=58976 /DEF=Rattus norvegicus solute carrier family 30 (zinc transporter), member 1 (Slc30a1), mRNA. /PROD=solute carrier family 30 (zinc transporter),member 1 /FL=gb:U17133.1 gb:NM_022853.1 NM_022853 solute carrier family 30 (zinc transporter), member 1 Slc30a1 58976 NM_022853 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006829 // zinc ion transport // inferred from direct assay /// 0006829 // zinc ion transport // inferred from mutant phenotype /// 0006829 // zinc ion transport // not recorded /// 0006829 // zinc ion transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006882 // cellular zinc ion homeostasis // inferred from electronic annotation /// 0006882 // cellular zinc ion homeostasis // not recorded /// 0046929 // negative regulation of neurotransmitter secretion // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070509 // calcium ion import // inferred from mutant phenotype /// 0070574 // cadmium ion transmembrane transport // inferred from mutant phenotype /// 0071584 // negative regulation of zinc ion import // inferred from electronic annotation /// 0071584 // negative regulation of zinc ion import // not recorded /// 0071585 // detoxification of cadmium ion // inferred from mutant phenotype /// 0090281 // negative regulation of calcium ion import // inferred from electronic annotation /// 0090281 // negative regulation of calcium ion import // not recorded 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030315 // T-tubule // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005385 // zinc ion transmembrane transporter activity // inferred from direct assay /// 0005385 // zinc ion transmembrane transporter activity // inferred from mutant phenotype /// 0005385 // zinc ion transmembrane transporter activity // not recorded /// 0008324 // cation transmembrane transporter activity // inferred from electronic annotation /// 0019855 // calcium channel inhibitor activity // inferred from mutant phenotype /// 0019855 // calcium channel inhibitor activity // not recorded /// 0019855 // calcium channel inhibitor activity // inferred from electronic annotation 1369100_at NM_134375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134375.1 /DB_XREF=gi:19705478 /GEN=LOC171390 /FEA=FLmRNA /CNT=4 /TID=Rn.9669.1 /TIER=FL /STK=2 /UG=Rn.9669 /DEF=Rattus norvegicus angiotensinvasopressin receptor (LOC171390), mRNA. /PROD=angiotensinvasopressin receptor /FL=gb:NM_134375.1 gb:M85183.1 NM_134375 NLR family, pyrin domain containing 6 Nlrp6 171390 NM_134375 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0042277 // peptide binding // inferred from mutant phenotype 1369101_at NM_012805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012805.1 /DB_XREF=gi:6981495 /GEN=Rxra /FEA=FLmRNA /CNT=4 /TID=Rn.34870.1 /TIER=FL /STK=2 /UG=Rn.34870 /LL=25271 /DEF=Rattus norvegicus Retinoid X receptor alpha (Rxra), mRNA. /PROD=retinoid X receptor alpha /FL=gb:L06482.1 gb:NM_012805.1 NM_012805 retinoid X receptor alpha Rxra 25271 NM_012805 0001889 // liver development // inferred from expression pattern /// 0001890 // placenta development // inferred from expression pattern /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from expression pattern /// 0007165 // signal transduction // not recorded /// 0007494 // midgut development // inferred from expression pattern /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007565 // female pregnancy // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0010269 // response to selenium ion // inferred from expression pattern /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0031103 // axon regeneration // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032526 // response to retinoic acid // not recorded /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0033189 // response to vitamin A // inferred from expression pattern /// 0033280 // response to vitamin D // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from expression pattern /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048384 // retinoic acid receptor signaling pathway // inferred from electronic annotation /// 0048384 // retinoic acid receptor signaling pathway // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from mutant phenotype /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0055012 // ventricular cardiac muscle cell differentiation // inferred from electronic annotation /// 0055012 // ventricular cardiac muscle cell differentiation // not recorded /// 0060038 // cardiac muscle cell proliferation // inferred from electronic annotation /// 0060038 // cardiac muscle cell proliferation // not recorded /// 0060528 // secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development // inferred from electronic annotation /// 0060528 // secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development // not recorded /// 0060687 // regulation of branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0060687 // regulation of branching involved in prostate gland morphogenesis // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003706 // ligand-regulated transcription factor activity // inferred from electronic annotation /// 0003706 // ligand-regulated transcription factor activity // not recorded /// 0003707 // steroid hormone receptor activity // traceable author statement /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // not recorded /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0004886 // retinoid-X receptor activity // inferred from electronic annotation /// 0004886 // retinoid-X receptor activity // not recorded /// 0005496 // steroid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0042809 // vitamin D receptor binding // inferred from electronic annotation /// 0042809 // vitamin D receptor binding // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0070644 // vitamin D response element binding // inferred from electronic annotation /// 0070644 // vitamin D response element binding // not recorded 1369102_at NM_012806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012806.1 /DB_XREF=gi:6981527 /GEN=Serk2 /FEA=FLmRNA /CNT=4 /TID=Rn.9911.1 /TIER=FL /STK=2 /UG=Rn.9911 /LL=25272 /DEF=Rattus norvegicus Stress activated protein kinase beta (Serk2), mRNA. /PROD=stress activated protein kinase beta /FL=gb:NM_012806.1 gb:L27128.1 NM_012806 mitogen activated protein kinase 10 Mapk10 25272 NM_012806 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007254 // JNK cascade // inferred from direct assay /// 0007254 // JNK cascade // not recorded /// 0007254 // JNK cascade // inferred from sequence or structural similarity /// 0007254 // JNK cascade // inferred from electronic annotation /// 0007258 // JUN phosphorylation // not recorded 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004705 // JUN kinase activity // inferred from direct assay /// 0004705 // JUN kinase activity // not recorded /// 0004705 // JUN kinase activity // inferred from sequence or structural similarity /// 0004705 // JUN kinase activity // inferred from electronic annotation /// 0004707 // MAP kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1369103_at NM_012755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012755.1 /DB_XREF=gi:6978862 /GEN=Fyn /FEA=FLmRNA /CNT=4 /TID=Rn.2432.1 /TIER=FL /STK=2 /UG=Rn.2432 /LL=25150 /DEF=Rattus norvegicus Fyn proto-oncogene (Fyn), mRNA. /PROD=fyn proto-oncogene /FL=gb:NM_012755.1 gb:U35365.1 NM_012755 FYN oncogene related to SRC, FGR, YES Fyn 25150 NM_012755 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from mutant phenotype /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0035235 // ionotropic glutamate receptor signaling pathway // traceable author statement /// 0042493 // response to drug // inferred from expression pattern /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045471 // response to ethanol // not recorded /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0050798 // activated T cell proliferation // inferred from electronic annotation /// 0050798 // activated T cell proliferation // not recorded /// 0050852 // T cell receptor signaling pathway // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // not recorded /// 0050966 // detection of mechanical stimulus involved in sensory perception of pain // inferred from electronic annotation /// 0050966 // detection of mechanical stimulus involved in sensory perception of pain // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern /// 0071375 // cellular response to peptide hormone stimulus // inferred from expression pattern 0005624 // membrane fraction // inferred from direct assay /// 0005740 // mitochondrial envelope // inferred from expression pattern /// 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // inferred from physical interaction /// 0001948 // glycoprotein binding // not recorded /// 0001948 // glycoprotein binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0015631 // tubulin binding // inferred from electronic annotation /// 0015631 // tubulin binding // not recorded /// 0016301 // kinase activity // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0042608 // T cell receptor binding // inferred from direct assay /// 0042609 // CD4 receptor binding // inferred from physical interaction /// 0042610 // CD8 receptor binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0043548 // phosphoinositide 3-kinase binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051428 // peptide hormone receptor binding // inferred from physical interaction 1369104_at NM_019142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019142.1 /DB_XREF=gi:11862979 /GEN=Prkaa1 /FEA=FLmRNA /CNT=4 /TID=Rn.44571.1 /TIER=FL /STK=2 /UG=Rn.44571 /LL=65248 /DEF=Rattus norvegicus 5-AMP-activated protein kinase alpha-1 catalytic subunit (Prkaa1), mRNA. /PROD=5-AMP-activated protein kinase alpha-1catalytic subunit /FL=gb:U40819.1 gb:NM_019142.1 NM_019142 protein kinase, AMP-activated, alpha 1 catalytic subunit Prkaa1 65248 NM_019142 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // non-traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0014823 // response to activity // inferred from direct assay /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0017148 // negative regulation of translation // non-traceable author statement /// 0019395 // fatty acid oxidation // not recorded /// 0019395 // fatty acid oxidation // inferred from electronic annotation /// 0031000 // response to caffeine // inferred from direct assay /// 0045722 // positive regulation of gluconeogenesis // non-traceable author statement /// 0046320 // regulation of fatty acid oxidation // not recorded /// 0046321 // positive regulation of fatty acid oxidation // non-traceable author statement /// 0046326 // positive regulation of glucose import // non-traceable author statement /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0060627 // regulation of vesicle-mediated transport // inferred from mutant phenotype /// 0070301 // cellular response to hydrogen peroxide // inferred from expression pattern /// 0071361 // cellular response to ethanol // inferred from expression pattern /// 0071417 // cellular response to organic nitrogen // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0031588 // AMP-activated protein kinase complex // inferred from direct assay /// 0031588 // AMP-activated protein kinase complex // inferred from mutant phenotype /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004679 // AMP-activated protein kinase activity // inferred from direct assay /// 0004679 // AMP-activated protein kinase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042557 // eukaryotic elongation factor-2 kinase activator activity // non-traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 1369105_a_at AF413572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF413572.1 /DB_XREF=gi:19548166 /FEA=FLmRNA /CNT=9 /TID=Rn.9748.2 /TIER=FL /STK=1 /UG=Rn.9748 /LL=24678 /UG_GENE=Pkib /DEF=Rattus norvegicus cerebellum protein kinase inhibitor beta-109 mRNA, complete cds; alternatively spliced. /PROD=protein kinase inhibitor beta-109 /FL=gb:AF413572.1 AF413572 protein kinase (cAMP-dependent, catalytic) inhibitor beta Pkib 24678 NM_001076553 /// NM_012627 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0004862 // cAMP-dependent protein kinase inhibitor activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1369106_at NM_057098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057098.1 /DB_XREF=gi:16923937 /GEN=Tcea2 /FEA=FLmRNA /CNT=3 /TID=Rn.78891.1 /TIER=FL /STK=2 /UG=Rn.78891 /LL=29575 /DEF=Rattus norvegicus transcription elongation factor A (SII), 2 (Tcea2), mRNA. /PROD=transcription elongation factor A (SII), 2 /FL=gb:NM_057098.1 NM_057098 transcription elongation factor A (SII), 2 Tcea2 29575 NM_057098 0006350 // transcription // inferred from electronic annotation /// 0006354 // RNA elongation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003711 // transcription elongation regulator activity // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016944 // RNA polymerase II transcription elongation factor activity // traceable author statement /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369107_at NM_017329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017329.1 /DB_XREF=gi:8394336 /GEN=Sftpa1 /FEA=FLmRNA /CNT=9 /TID=Rn.11343.1 /TIER=FL /STK=2 /UG=Rn.11343 /LL=24773 /DEF=Rattus norvegicus Surfactant-associated protein 1 (pulmonary surfactant protein, SP-A) (Sftpa1), mRNA. /PROD=pulmonary surfactant-associated glycoprotein A /FL=gb:M33201.1 gb:M15754.1 gb:NM_017329.1 NM_017329 surfactant protein A1 Sftpa1 24773 NM_017329 0001666 // response to hypoxia // inferred from expression pattern /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0033189 // response to vitamin A // inferred from expression pattern /// 0050766 // positive regulation of phagocytosis // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0055093 // response to hyperoxia // inferred from expression pattern /// 0070741 // response to interleukin-6 // inferred from expression pattern /// 0070849 // response to epidermal growth factor stimulus // inferred from expression pattern /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern /// 0071732 // cellular response to nitric oxide // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005771 // multivesicular body // inferred from direct assay /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0042599 // lamellar body // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0051635 // bacterial cell surface binding // inferred from direct assay 1369108_at NM_019221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019221.1 /DB_XREF=gi:9507208 /GEN=Trp63 /FEA=FLmRNA /CNT=7 /TID=Rn.42907.1 /TIER=FL /STK=2 /UG=Rn.42907 /LL=29472 /DEF=Rattus norvegicus transformation related protein 63 (Trp63), mRNA. /PROD=transformation related protein 63 /FL=gb:NM_019221.1 NM_019221 tumor protein p63 Tp63 246334 NM_001127339 /// NM_001127341 /// NM_001127342 /// NM_001127343 /// NM_001127344 /// NM_019221 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001302 // replicative cell aging // inferred from mutant phenotype /// 0001501 // skeletal system development // not recorded /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001736 // establishment of planar polarity // not recorded /// 0001736 // establishment of planar polarity // inferred from electronic annotation /// 0001738 // morphogenesis of a polarized epithelium // not recorded /// 0001738 // morphogenesis of a polarized epithelium // inferred from electronic annotation /// 0001942 // hair follicle development // not recorded /// 0001942 // hair follicle development // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002064 // epithelial cell development // not recorded /// 0002064 // epithelial cell development // inferred from electronic annotation /// 0002347 // response to tumor cell // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0007389 // pattern specification process // not recorded /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007499 // ectoderm and mesoderm interaction // not recorded /// 0007499 // ectoderm and mesoderm interaction // inferred from electronic annotation /// 0007569 // cell aging // not recorded /// 0007569 // cell aging // inferred from electronic annotation /// 0008544 // epidermis development // not recorded /// 0008544 // epidermis development // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // not recorded /// 0009954 // proximal/distal pattern formation // inferred from electronic annotation /// 0010259 // multicellular organismal aging // not recorded /// 0010259 // multicellular organismal aging // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // not recorded /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030850 // prostate gland development // not recorded /// 0030850 // prostate gland development // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030859 // polarized epithelial cell differentiation // not recorded /// 0030859 // polarized epithelial cell differentiation // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // not recorded /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0035121 // tail morphogenesis // not recorded /// 0035121 // tail morphogenesis // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043589 // skin morphogenesis // not recorded /// 0043589 // skin morphogenesis // inferred from electronic annotation /// 0043616 // keratinocyte proliferation // not recorded /// 0043616 // keratinocyte proliferation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045617 // negative regulation of keratinocyte differentiation // not recorded /// 0045617 // negative regulation of keratinocyte differentiation // inferred from electronic annotation /// 0045747 // positive regulation of Notch signaling pathway // not recorded /// 0045747 // positive regulation of Notch signaling pathway // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048485 // sympathetic nervous system development // not recorded /// 0048485 // sympathetic nervous system development // inferred from electronic annotation /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded /// 0048646 // anatomical structure formation involved in morphogenesis // inferred from electronic annotation /// 0048745 // smooth muscle tissue development // not recorded /// 0048745 // smooth muscle tissue development // inferred from electronic annotation /// 0048807 // female genitalia morphogenesis // not recorded /// 0048807 // female genitalia morphogenesis // inferred from electronic annotation /// 0051289 // protein homotetramerization // not recorded /// 0051289 // protein homotetramerization // inferred from electronic annotation /// 0051402 // neuron apoptosis // not recorded /// 0051402 // neuron apoptosis // inferred from electronic annotation /// 0060157 // urinary bladder development // not recorded /// 0060157 // urinary bladder development // inferred from electronic annotation /// 0060197 // cloacal septation // not recorded /// 0060197 // cloacal septation // inferred from electronic annotation /// 0060513 // prostatic bud formation // not recorded /// 0060513 // prostatic bud formation // inferred from electronic annotation /// 0060529 // squamous basal epithelial stem cell differentiation involved in prostate gland acinus development // not recorded /// 0060529 // squamous basal epithelial stem cell differentiation involved in prostate gland acinus development // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0019718 // rough microsome // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // not recorded /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369109_at U02083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U02083.1 /DB_XREF=gi:403573 /FEA=FLmRNA /CNT=7 /TID=Rn.10118.1 /TIER=FL /STK=2 /UG=Rn.10118 /LL=25601 /UG_GENE=Oprm1 /DEF=Rattus norvegicus mu-opioid receptor mRNA, complete cds. /PROD=mu-opioid receptor /FL=gb:NM_013071.1 gb:L20684.1 gb:L13069.1 gb:U35424.1 gb:D16349.1 gb:U02083.1 gb:L22455.1 U02083 opioid receptor, mu 1 Oprm1 25601 NM_001038597 /// NM_001038599 /// NM_001038600 /// NM_001038601 /// NM_013071 /// NR_027877 0002438 // acute inflammatory response to antigenic stimulus // inferred from expression pattern /// 0006955 // immune response // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007191 // activation of adenylate cyclase activity by dopamine receptor signaling pathway // not recorded /// 0007191 // activation of adenylate cyclase activity by dopamine receptor signaling pathway // inferred from electronic annotation /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // inferred from direct assay /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007610 // behavior // not recorded /// 0007610 // behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0031635 // inhibition of adenylate cyclase activity by opioid receptor signaling pathway // inferred from direct assay /// 0032094 // response to food // inferred from expression pattern /// 0032100 // positive regulation of appetite // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0042060 // wound healing // inferred from expression pattern /// 0042220 // response to cocaine // inferred from expression pattern /// 0043278 // response to morphine // inferred from expression pattern /// 0045471 // response to ethanol // inferred from direct assay /// 0051930 // regulation of sensory perception of pain // inferred from direct assay /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from direct assay /// 0070848 // response to growth factor stimulus // inferred from expression pattern 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0005925 // focal adhesion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0032590 // dendrite membrane // inferred from direct assay /// 0032839 // dendrite cytoplasm // inferred from direct assay /// 0042383 // sarcolemma // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0044424 // intracellular part // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from direct assay /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004985 // opioid receptor activity // inferred from electronic annotation /// 0004988 // mu-opioid receptor activity // inferred from direct assay /// 0004988 // mu-opioid receptor activity // not recorded /// 0004988 // mu-opioid receptor activity // traceable author statement /// 0004988 // mu-opioid receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1369110_x_at NM_012645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012645.1 /DB_XREF=gi:6981493 /GEN=RT1Aw2 /FEA=FLmRNA /CNT=7 /TID=Rn.39743.1 /TIER=FL /STK=2 /UG=Rn.39743 /LL=24737 /DEF=Rattus norvegicus RT1 class Ib gene (RT1Aw2), mRNA. /PROD=RT1 class Ib gene RT1Aw2 /FL=gb:NM_012645.1 gb:M31038.1 NM_012645 RT1 class Ib, locus EC2 RT1-EC2 24737 NM_012645 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 1369111_at NM_012556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012556.1 /DB_XREF=gi:6978824 /GEN=Fabp1 /FEA=FLmRNA /CNT=7 /TID=Rn.36412.1 /TIER=FL /STK=2 /UG=Rn.36412 /LL=24360 /DEF=Rattus norvegicus Fatty acid binding protein 1, liver (Fabp1), mRNA. /PROD=fatty acid binding protein 1, liver /FL=gb:M35991.1 gb:NM_012556.1 NM_012556 fatty acid binding protein 1, liver Fabp1 24360 NM_012556 0006810 // transport // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0007067 // mitosis // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from expression pattern /// 0015909 // long-chain fatty acid transport // inferred from mutant phenotype /// 0032000 // positive regulation of fatty acid beta-oxidation // inferred from direct assay /// 0050892 // intestinal absorption // inferred from direct assay /// 0051345 // positive regulation of hydrolase activity // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005782 // peroxisomal matrix // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0045179 // apical cortex // inferred from direct assay 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0005215 // transporter activity // inferred from electronic annotation /// 0005324 // long-chain fatty acid transporter activity // inferred from mutant phenotype /// 0005488 // binding // inferred from electronic annotation /// 0005504 // fatty acid binding // inferred from direct assay /// 0005504 // fatty acid binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from mutant phenotype /// 0008144 // drug binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0032052 // bile acid binding // inferred from mutant phenotype /// 0051978 // lysophospholipid transporter activity // inferred by curator 1369112_at M18088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M18088.1 /DB_XREF=gi:202657 /FEA=FLmRNA /CNT=8 /TID=Rn.9666.1 /TIER=FL /STK=1 /UG=Rn.9666 /LL=24260 /UG_GENE=Chrm3 /UG_TITLE=Cholinergic receptor, muscarinic 3 /DEF=Rat muscarinic acetylcholine receptor (mAChR) subtype M4 mRNA, complete cds. /FL=gb:M18088.1 gb:NM_012527.1 gb:AB017656.1 M18088 cholinergic receptor, muscarinic 3 Chrm3 24260 NM_012527 0003056 // regulation of vascular smooth muscle contraction // inferred from mutant phenotype /// 0006939 // smooth muscle contraction // not recorded /// 0006939 // smooth muscle contraction // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007213 // muscarinic acetylcholine receptor signaling pathway // inferred from direct assay /// 0007213 // muscarinic acetylcholine receptor signaling pathway // inferred from mutant phenotype /// 0007586 // digestion // inferred from electronic annotation /// 0007586 // digestion // not recorded /// 0019229 // regulation of vasoconstriction // inferred from mutant phenotype /// 0045987 // positive regulation of smooth muscle contraction // inferred from mutant phenotype /// 0045987 // positive regulation of smooth muscle contraction // not recorded /// 0045987 // positive regulation of smooth muscle contraction // inferred from electronic annotation 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0032279 // asymmetric synapse // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004981 // muscarinic acetylcholine receptor activity // inferred from direct assay /// 0004981 // muscarinic acetylcholine receptor activity // inferred from mutant phenotype /// 0004981 // muscarinic acetylcholine receptor activity // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0008144 // drug binding // inferred from mutant phenotype /// 0042166 // acetylcholine binding // inferred from mutant phenotype 1369113_at NM_019282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019282.1 /DB_XREF=gi:9506492 /GEN=Cktsf1b1 /FEA=FLmRNA /CNT=6 /TID=Rn.42929.1 /TIER=FL /STK=2 /UG=Rn.42929 /LL=50566 /DEF=Rattus norvegicus cysteine knot superfamily 1, BMP antagonist 1 (Cktsf1b1), mRNA. /PROD=cysteine knot superfamily 1, BMP antagonist 1 /FL=gb:NM_019282.1 NM_019282 gremlin 1, cysteine knot superfamily, homolog (Xenopus laevis) Grem1 50566 NM_019282 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0002689 // negative regulation of leukocyte chemotaxis // inferred from direct assay /// 0003337 // mesenchymal to epithelial transition involved in metanephros morphogenesis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from expression pattern /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009954 // proximal/distal pattern formation // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // not recorded /// 0010717 // regulation of epithelial to mesenchymal transition // inferred from electronic annotation /// 0010717 // regulation of epithelial to mesenchymal transition // not recorded /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0032582 // negative regulation of gene-specific transcription // inferred from electronic annotation /// 0042346 // positive regulation of NF-kappaB import into nucleus // inferred from electronic annotation /// 0042346 // positive regulation of NF-kappaB import into nucleus // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0060676 // ureteric bud formation // inferred from electronic annotation /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1369114_at NM_012684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012684.1 /DB_XREF=gi:6981701 /GEN=Vcsa1 /FEA=FLmRNA /CNT=6 /TID=Rn.9927.1 /TIER=FL /STK=1 /UG=Rn.9927 /LL=24867 /DEF=Rattus norvegicus Variable coding sequence A1 (androgen regulated protein (SMR1) gene) (Vcsa1), mRNA. /PROD=variable coding sequence A1 (androgen regulatedprotein (SMR1) gene) /FL=gb:M63112.1 gb:NM_012684.1 NM_012684 variable coding sequence A1 Vcsa1 24867 NM_012684 0048585 // negative regulation of response to stimulus // inferred from direct assay /// 0051930 // regulation of sensory perception of pain // inferred from direct assay 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from electronic annotation 0004866 // endopeptidase inhibitor activity // inferred from direct assay /// 0005179 // hormone activity // inferred from direct assay /// 0005179 // hormone activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from direct assay 1369115_at AY057895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY057895.1 /DB_XREF=gi:18476481 /FEA=FLmRNA /CNT=6 /TID=Rn.10206.1 /TIER=FL /STK=2 /UG=Rn.10206 /LL=24176 /UG_GENE=Adrb2 /DEF=Rattus norvegicus strain SHROla beta-2 adrenergic receptor mRNA, complete cds. /PROD=beta-2 adrenergic receptor /FL=gb:NM_012492.1 gb:AY057896.1 gb:AY057895.1 gb:J03024.1 AY057895 adrenergic, beta-2-, receptor, surface Adrb2 24176 NM_012492 0001993 // regulation of systemic arterial blood pressure by norepinephrine-epinephrine // not recorded /// 0001993 // regulation of systemic arterial blood pressure by norepinephrine-epinephrine // inferred from electronic annotation /// 0002024 // diet induced thermogenesis // inferred from electronic annotation /// 0002024 // diet induced thermogenesis // not recorded /// 0002025 // vasodilation by norepinephrine-epinephrine involved in regulation of systemic arterial blood pressure // inferred from direct assay /// 0002025 // vasodilation by norepinephrine-epinephrine involved in regulation of systemic arterial blood pressure // not recorded /// 0002025 // vasodilation by norepinephrine-epinephrine involved in regulation of systemic arterial blood pressure // inferred from electronic annotation /// 0002028 // regulation of sodium ion transport // not recorded /// 0002028 // regulation of sodium ion transport // inferred from electronic annotation /// 0002032 // desensitization of G-protein coupled receptor protein signaling pathway by arrestin // inferred from electronic annotation /// 0002032 // desensitization of G-protein coupled receptor protein signaling pathway by arrestin // not recorded /// 0002032 // desensitization of G-protein coupled receptor protein signaling pathway by arrestin // inferred from sequence or structural similarity /// 0002086 // diaphragm contraction // inferred from direct assay /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // not recorded /// 0006898 // receptor-mediated endocytosis // inferred from sequence or structural similarity /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from direct assay /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007190 // activation of adenylate cyclase activity // not recorded /// 0007190 // activation of adenylate cyclase activity // inferred from electronic annotation /// 0007190 // activation of adenylate cyclase activity // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0009409 // response to cold // inferred from electronic annotation /// 0009409 // response to cold // not recorded /// 0010765 // positive regulation of sodium ion transport // inferred from direct assay /// 0030279 // negative regulation of ossification // inferred from mutant phenotype /// 0030501 // positive regulation of bone mineralization // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // not recorded /// 0031649 // heat generation // inferred from electronic annotation /// 0031649 // heat generation // not recorded /// 0040015 // negative regulation of multicellular organism growth // inferred from electronic annotation /// 0040015 // negative regulation of multicellular organism growth // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043268 // positive regulation of potassium ion transport // inferred from direct assay /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from sequence or structural similarity /// 0045453 // bone resorption // inferred from electronic annotation /// 0045453 // bone resorption // not recorded /// 0045823 // positive regulation of heart contraction // inferred from direct assay /// 0045909 // positive regulation of vasodilation // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045986 // negative regulation of smooth muscle contraction // inferred from electronic annotation /// 0045986 // negative regulation of smooth muscle contraction // not recorded /// 0048633 // positive regulation of skeletal muscle tissue growth // inferred from mutant phenotype /// 0050728 // negative regulation of inflammatory response // inferred from direct assay /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded /// 0051927 // negative regulation of calcium ion transport via voltage-gated calcium channel activity // inferred from direct assay /// 0051930 // regulation of sensory perception of pain // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005768 // endosome // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005901 // caveola // inferred from direct assay /// 0005901 // caveola // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0032809 // neuronal cell body membrane // inferred from direct assay /// 0042383 // sarcolemma // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043235 // receptor complex // inferred from electronic annotation /// 0043235 // receptor complex // not recorded /// 0043235 // receptor complex // inferred from sequence or structural similarity /// 0044424 // intracellular part // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004935 // adrenergic receptor activity // inferred from electronic annotation /// 0004941 // beta2-adrenergic receptor activity // inferred from direct assay /// 0004941 // beta2-adrenergic receptor activity // not recorded /// 0004941 // beta2-adrenergic receptor activity // inferred from electronic annotation /// 0004941 // beta2-adrenergic receptor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0008179 // adenylate cyclase binding // inferred from electronic annotation /// 0008179 // adenylate cyclase binding // not recorded /// 0015459 // potassium channel regulator activity // inferred from electronic annotation /// 0015459 // potassium channel regulator activity // not recorded /// 0030165 // PDZ domain binding // traceable author statement /// 0035240 // dopamine binding // inferred from direct assay /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0051379 // epinephrine binding // inferred from direct assay /// 0051379 // epinephrine binding // traceable author statement /// 0051380 // norepinephrine binding // inferred from direct assay /// 0051380 // norepinephrine binding // not recorded /// 0051380 // norepinephrine binding // inferred from electronic annotation /// 0051380 // norepinephrine binding // inferred from sequence or structural similarity 1369116_a_at NM_017338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017338.1 /DB_XREF=gi:8567331 /GEN=Calca /FEA=FLmRNA /CNT=6 /TID=Rn.48810.1 /TIER=FL /STK=2 /UG=Rn.48810 /LL=24241 /DEF=Rattus norvegicus Calcitonincalcitonin-related polypeptide, alpha (Calca), mRNA. /PROD=Calca /FL=gb:M26137.1 gb:NM_017338.1 NM_017338 calcitonin-related polypeptide alpha Calca 24241 NM_001033955 /// NM_001033956 /// NM_017338 0001935 // endothelial cell proliferation // not recorded /// 0001944 // vasculature development // not recorded /// 0001976 // neurological system process involved in regulation of systemic arterial blood pressure // not recorded /// 0001984 // vasodilation of artery involved in baroreceptor response to increased systemic arterial blood pressure // inferred from electronic annotation /// 0001984 // vasodilation of artery involved in baroreceptor response to increased systemic arterial blood pressure // not recorded /// 0002027 // regulation of heart rate // inferred from electronic annotation /// 0002027 // regulation of heart rate // not recorded /// 0002548 // monocyte chemotaxis // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006954 // inflammatory response // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007159 // leukocyte cell-cell adhesion // not recorded /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007190 // activation of adenylate cyclase activity // not recorded /// 0007190 // activation of adenylate cyclase activity // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007528 // neuromuscular junction development // not recorded /// 0007566 // embryo implantation // not recorded /// 0007568 // aging // inferred from expression pattern /// 0007631 // feeding behavior // inferred from electronic annotation /// 0007631 // feeding behavior // not recorded /// 0008016 // regulation of heart contraction // inferred from direct assay /// 0008217 // regulation of blood pressure // not recorded /// 0009408 // response to heat // inferred from electronic annotation /// 0009408 // response to heat // not recorded /// 0010523 // negative regulation of calcium ion transport into cytosol // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030279 // negative regulation of ossification // inferred from electronic annotation /// 0030279 // negative regulation of ossification // not recorded /// 0031645 // negative regulation of neurological system process // inferred from electronic annotation /// 0031645 // negative regulation of neurological system process // not recorded /// 0032147 // activation of protein kinase activity // not recorded /// 0032730 // positive regulation of interleukin-1 alpha production // not recorded /// 0032757 // positive regulation of interleukin-8 production // not recorded /// 0042311 // vasodilation // inferred from direct assay /// 0043542 // endothelial cell migration // not recorded /// 0045651 // positive regulation of macrophage differentiation // not recorded /// 0045671 // negative regulation of osteoclast differentiation // not recorded /// 0045762 // positive regulation of adenylate cyclase activity // not recorded /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0045776 // negative regulation of blood pressure // not recorded /// 0045776 // negative regulation of blood pressure // inferred from electronic annotation /// 0045778 // positive regulation of ossification // inferred from electronic annotation /// 0045778 // positive regulation of ossification // not recorded /// 0045779 // negative regulation of bone resorption // not recorded /// 0045785 // positive regulation of cell adhesion // not recorded /// 0045909 // positive regulation of vasodilation // not recorded /// 0045986 // negative regulation of smooth muscle contraction // inferred from mutant phenotype /// 0045986 // negative regulation of smooth muscle contraction // not recorded /// 0045986 // negative regulation of smooth muscle contraction // inferred from electronic annotation /// 0048265 // response to pain // inferred from electronic annotation /// 0048265 // response to pain // not recorded /// 0050727 // regulation of inflammatory response // inferred from mutant phenotype /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // inferred from electronic annotation /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // not recorded /// 0051480 // cytosolic calcium ion homeostasis // not recorded /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043195 // terminal button // inferred from electronic annotation /// 0043195 // terminal button // not recorded 0005102 // receptor binding // not recorded /// 0005179 // hormone activity // inferred from electronic annotation /// 0005184 // neuropeptide hormone activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0031716 // calcitonin receptor binding // inferred from mutant phenotype /// 0031716 // calcitonin receptor binding // not recorded /// 0031716 // calcitonin receptor binding // traceable author statement /// 0031716 // calcitonin receptor binding // inferred from electronic annotation 1369117_at NM_017338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017338.1 /DB_XREF=gi:8567331 /GEN=Calca /FEA=FLmRNA /CNT=6 /TID=Rn.48810.1 /TIER=FL /STK=2 /UG=Rn.48810 /LL=24241 /DEF=Rattus norvegicus Calcitonincalcitonin-related polypeptide, alpha (Calca), mRNA. /PROD=Calca /FL=gb:M26137.1 gb:NM_017338.1 NM_017338 calcitonin-related polypeptide alpha Calca 24241 NM_001033955 /// NM_001033956 /// NM_017338 0001935 // endothelial cell proliferation // not recorded /// 0001944 // vasculature development // not recorded /// 0001976 // neurological system process involved in regulation of systemic arterial blood pressure // not recorded /// 0001984 // vasodilation of artery involved in baroreceptor response to increased systemic arterial blood pressure // inferred from electronic annotation /// 0001984 // vasodilation of artery involved in baroreceptor response to increased systemic arterial blood pressure // not recorded /// 0002027 // regulation of heart rate // inferred from electronic annotation /// 0002027 // regulation of heart rate // not recorded /// 0002548 // monocyte chemotaxis // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006954 // inflammatory response // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007159 // leukocyte cell-cell adhesion // not recorded /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007190 // activation of adenylate cyclase activity // not recorded /// 0007190 // activation of adenylate cyclase activity // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007528 // neuromuscular junction development // not recorded /// 0007566 // embryo implantation // not recorded /// 0007568 // aging // inferred from expression pattern /// 0007631 // feeding behavior // inferred from electronic annotation /// 0007631 // feeding behavior // not recorded /// 0008016 // regulation of heart contraction // inferred from direct assay /// 0008217 // regulation of blood pressure // not recorded /// 0009408 // response to heat // inferred from electronic annotation /// 0009408 // response to heat // not recorded /// 0010523 // negative regulation of calcium ion transport into cytosol // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030279 // negative regulation of ossification // inferred from electronic annotation /// 0030279 // negative regulation of ossification // not recorded /// 0031645 // negative regulation of neurological system process // inferred from electronic annotation /// 0031645 // negative regulation of neurological system process // not recorded /// 0032147 // activation of protein kinase activity // not recorded /// 0032730 // positive regulation of interleukin-1 alpha production // not recorded /// 0032757 // positive regulation of interleukin-8 production // not recorded /// 0042311 // vasodilation // inferred from direct assay /// 0043542 // endothelial cell migration // not recorded /// 0045651 // positive regulation of macrophage differentiation // not recorded /// 0045671 // negative regulation of osteoclast differentiation // not recorded /// 0045762 // positive regulation of adenylate cyclase activity // not recorded /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0045776 // negative regulation of blood pressure // not recorded /// 0045776 // negative regulation of blood pressure // inferred from electronic annotation /// 0045778 // positive regulation of ossification // inferred from electronic annotation /// 0045778 // positive regulation of ossification // not recorded /// 0045779 // negative regulation of bone resorption // not recorded /// 0045785 // positive regulation of cell adhesion // not recorded /// 0045909 // positive regulation of vasodilation // not recorded /// 0045986 // negative regulation of smooth muscle contraction // inferred from mutant phenotype /// 0045986 // negative regulation of smooth muscle contraction // not recorded /// 0045986 // negative regulation of smooth muscle contraction // inferred from electronic annotation /// 0048265 // response to pain // inferred from electronic annotation /// 0048265 // response to pain // not recorded /// 0050727 // regulation of inflammatory response // inferred from mutant phenotype /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // inferred from electronic annotation /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // not recorded /// 0051480 // cytosolic calcium ion homeostasis // not recorded /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043195 // terminal button // inferred from electronic annotation /// 0043195 // terminal button // not recorded 0005102 // receptor binding // not recorded /// 0005179 // hormone activity // inferred from electronic annotation /// 0005184 // neuropeptide hormone activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0031716 // calcitonin receptor binding // inferred from mutant phenotype /// 0031716 // calcitonin receptor binding // not recorded /// 0031716 // calcitonin receptor binding // traceable author statement /// 0031716 // calcitonin receptor binding // inferred from electronic annotation 1369118_a_at L07646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L07646.1 /DB_XREF=gi:294561 /FEA=FLmRNA /CNT=7 /TID=Rn.10268.1 /TIER=FL /STK=1 /UG=Rn.10268 /LL=81668 /UG_GENE=Gnrhr /DEF=Rattus norvegicus gonadotropin-releasing hormone receptor mRNA, complete cds. /PROD=gonadotropin-releasing hormone receptor /FL=gb:L07646.1 gb:NM_031038.1 gb:L25053.1 L07646 gonadotropin releasing hormone receptor Gnrhr 81668 NM_031038 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from direct assay 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004968 // gonadotropin-releasing hormone receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016520 // growth hormone-releasing hormone receptor activity // inferred from direct assay 1369119_a_at X69663 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X69663.1 /DB_XREF=gi:395367 /FEA=mRNA /CNT=1 /TID=Rn.32096.3 /TIER=ConsEnd /STK=0 /UG=Rn.32096 /LL=65032 /UG_GENE=Htr7 /DEF=R.norvegicus mRNA for serotonin receptor. /PROD=serotonin receptor X69663 5-hydroxytryptamine (serotonin) receptor 7 Htr7 65032 NM_022938 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007187 // G-protein signaling, coupled to cyclic nucleotide second messenger // traceable author statement /// 0007192 // activation of adenylate cyclase activity by serotonin receptor signaling pathway // inferred from direct assay /// 0007210 // serotonin receptor signaling pathway // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030594 // neurotransmitter receptor activity // inferred from direct assay 1369120_a_at NM_012858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012858.1 /DB_XREF=gi:6981157 /GEN=Lhb /FEA=FLmRNA /CNT=6 /TID=Rn.10108.1 /TIER=FL /STK=2 /UG=Rn.10108 /LL=25329 /DEF=Rattus norvegicus Luteinizing hormone (lutropin) subunit beta (Lhb), mRNA. /PROD=luteinizing hormone (lutropin) subunit beta /FL=gb:U25653.1 gb:NM_012858.1 NM_012858 luteinizing hormone beta Lhb 25329 NM_001033975 /// NM_012858 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded 0005179 // hormone activity // inferred from electronic annotation 1369121_at NM_021672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021672.1 /DB_XREF=gi:11067392 /GEN=Gdf9 /FEA=FLmRNA /CNT=6 /TID=Rn.42874.1 /TIER=FL /STK=2 /UG=Rn.42874 /LL=59304 /DEF=Rattus norvegicus growth differentiation factor-9 (Gdf9), mRNA. /PROD=growth differentiation factor-9 /FL=gb:AF099912.1 gb:NM_021672.1 NM_021672 growth differentiation factor 9 Gdf9 59304 NM_021672 0001555 // oocyte growth // inferred from electronic annotation /// 0001555 // oocyte growth // not recorded /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded 0008083 // growth factor activity // traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation 1369122_at AF235993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF235993.1 /DB_XREF=gi:7107453 /FEA=FLmRNA /CNT=6 /TID=Rn.10668.1 /TIER=FL /STK=2 /UG=Rn.10668 /LL=24887 /UG_GENE=Bax /DEF=Rattus norvegicus Bax protein splice variant k mRNA, complete cds. /PROD=Bax protein splice variant k /FL=gb:U49729.1 gb:AF235993.1 gb:NM_017059.1 AF235993 Bcl2-associated X protein Bax 24887 NM_017059 0001101 // response to acid // not recorded /// 0001541 // ovarian follicle development // inferred from expression pattern /// 0001541 // ovarian follicle development // not recorded /// 0001764 // neuron migration // not recorded /// 0001776 // leukocyte homeostasis // not recorded /// 0001777 // T cell homeostatic proliferation // not recorded /// 0001782 // B cell homeostasis // not recorded /// 0001783 // B cell apoptosis // not recorded /// 0001822 // kidney development // not recorded /// 0001836 // release of cytochrome c from mitochondria // inferred from mutant phenotype /// 0001836 // release of cytochrome c from mitochondria // not recorded /// 0001844 // protein insertion into mitochondrial membrane involved in induction of apoptosis // not recorded /// 0001974 // blood vessel remodeling // not recorded /// 0002262 // myeloid cell homeostasis // not recorded /// 0002352 // B cell negative selection // not recorded /// 0002358 // B cell homeostatic proliferation // not recorded /// 0002904 // positive regulation of B cell apoptosis // not recorded /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // not recorded /// 0006687 // glycosphingolipid metabolic process // not recorded /// 0006808 // regulation of nitrogen utilization // not recorded /// 0006915 // apoptosis // inferred from expression pattern /// 0006915 // apoptosis // inferred from mutant phenotype /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from mutant phenotype /// 0006917 // induction of apoptosis // not recorded /// 0006919 // activation of caspase activity // not recorded /// 0006922 // cleavage of lamin // not recorded /// 0006927 // transformed cell apoptosis // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0007007 // inner mitochondrial membrane organization // inferred from direct assay /// 0007008 // outer mitochondrial membrane organization // inferred from direct assay /// 0007281 // germ cell development // not recorded /// 0007283 // spermatogenesis // not recorded /// 0007399 // nervous system development // not recorded /// 0007548 // sex differentiation // not recorded /// 0008053 // mitochondrial fusion // not recorded /// 0008283 // cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008584 // male gonad development // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0008629 // induction of apoptosis by intracellular signals // not recorded /// 0008634 // negative regulation of survival gene product expression // not recorded /// 0008635 // activation of caspase activity by cytochrome c // not recorded /// 0008635 // activation of caspase activity by cytochrome c // traceable author statement /// 0008637 // apoptotic mitochondrial changes // not recorded /// 0009566 // fertilization // not recorded /// 0009611 // response to wounding // not recorded /// 0009636 // response to toxin // not recorded /// 0009651 // response to salt stress // not recorded /// 0009791 // post-embryonic development // not recorded /// 0010212 // response to ionizing radiation // not recorded /// 0010248 // establishment or maintenance of transmembrane electrochemical gradient // not recorded /// 0010332 // response to gamma radiation // not recorded /// 0010524 // positive regulation of calcium ion transport into cytosol // not recorded /// 0019987 // negative regulation of anti-apoptosis // not recorded /// 0021854 // hypothalamus development // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0030264 // nuclear fragmentation involved in apoptotic nuclear change // not recorded /// 0031558 // induction of apoptosis in response to chemical stimulus // not recorded /// 0032471 // reduction of endoplasmic reticulum calcium ion concentration // not recorded /// 0032976 // release of matrix enzymes from mitochondria // not recorded /// 0033137 // negative regulation of peptidyl-serine phosphorylation // not recorded /// 0033599 // regulation of mammary gland epithelial cell proliferation // not recorded /// 0034349 // glial cell apoptosis // inferred from expression pattern /// 0034644 // cellular response to UV // not recorded /// 0035108 // limb morphogenesis // not recorded /// 0035234 // germ cell programmed cell death // not recorded /// 0042220 // response to cocaine // inferred from expression pattern /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043281 // regulation of caspase activity // not recorded /// 0043496 // regulation of protein homodimerization activity // not recorded /// 0043497 // regulation of protein heterodimerization activity // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043525 // positive regulation of neuron apoptosis // not recorded /// 0043653 // mitochondrial fragmentation involved in apoptosis // not recorded /// 0045136 // development of secondary sexual characteristics // not recorded /// 0045333 // cellular respiration // inferred from direct assay /// 0046666 // retinal cell programmed cell death // not recorded /// 0046674 // induction of retinal programmed cell death // not recorded /// 0046688 // response to copper ion // inferred from expression pattern /// 0046902 // regulation of mitochondrial membrane permeability // not recorded /// 0048087 // positive regulation of developmental pigmentation // not recorded /// 0048147 // negative regulation of fibroblast proliferation // not recorded /// 0048515 // spermatid differentiation // not recorded /// 0048597 // post-embryonic camera-type eye morphogenesis // not recorded /// 0048678 // response to axon injury // not recorded /// 0048872 // homeostasis of number of cells // not recorded /// 0048873 // homeostasis of number of cells within a tissue // not recorded /// 0051260 // protein homooligomerization // not recorded /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // not recorded /// 0051402 // neuron apoptosis // not recorded /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0051726 // regulation of cell cycle // not recorded /// 0051881 // regulation of mitochondrial membrane potential // not recorded /// 0060011 // Sertoli cell proliferation // not recorded /// 0060041 // retina development in camera-type eye // not recorded /// 0060058 // positive regulation of apoptosis involved in mammary gland involution // not recorded /// 0060068 // vagina development // not recorded /// 0070059 // apoptosis in response to endoplasmic reticulum stress // not recorded 0005622 // intracellular // not recorded /// 0005625 // soluble fraction // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from mutant phenotype /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // not recorded /// 0005757 // mitochondrial permeability transition pore complex // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from mutant phenotype /// 0031966 // mitochondrial membrane // not recorded /// 0044445 // cytosolic part // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008289 // lipid binding // not recorded /// 0031072 // heat shock protein binding // inferred from physical interaction /// 0042802 // identical protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046982 // protein heterodimerization activity // not recorded /// 0051087 // chaperone binding // inferred from physical interaction /// 0051400 // BH domain binding // inferred from physical interaction /// 0051434 // BH3 domain binding // not recorded 1369123_a_at NM_012511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012511.1 /DB_XREF=gi:6978560 /GEN=Atp7b /FEA=FLmRNA /CNT=5 /TID=Rn.10025.1 /TIER=FL /STK=2 /UG=Rn.10025 /LL=24218 /DEF=Rattus norvegicus ATPase, Cu++ transporting, beta polypeptide (same as Wilson disease) (Atp7b), mRNA. /PROD=ATPase, Cu++ transporting, beta polypeptide(same as Wilson disease) /FL=gb:U08344.1 gb:AB017791.1 gb:AB017793.1 gb:NM_012511.1 gb:AB017792.1 NM_012511 ATPase, Cu++ transporting, beta polypeptide Atp7b 24218 NM_012511 0006200 // ATP catabolic process // not recorded /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // not recorded /// 0006878 // cellular copper ion homeostasis // not recorded /// 0006882 // cellular zinc ion homeostasis // not recorded /// 0007595 // lactation // inferred from expression pattern /// 0007595 // lactation // not recorded /// 0007623 // circadian rhythm // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0010043 // response to zinc ion // inferred from expression pattern /// 0015674 // di-, tri-valent inorganic cation transport // not recorded /// 0015677 // copper ion import // not recorded /// 0015680 // intracellular copper ion transport // not recorded /// 0030001 // metal ion transport // inferred from electronic annotation /// 0035434 // copper ion transmembrane transport // not recorded /// 0046688 // response to copper ion // inferred from expression pattern /// 0046688 // response to copper ion // not recorded /// 0048511 // rhythmic process // inferred from electronic annotation /// 0051208 // sequestering of calcium ion // not recorded /// 0051591 // response to cAMP // inferred from expression pattern /// 0060003 // copper ion export // not recorded 0005624 // membrane fraction // not recorded /// 0005770 // late endosome // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005802 // trans-Golgi network // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005923 // tight junction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0016323 // basolateral plasma membrane // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004008 // copper-exporting ATPase activity // inferred from electronic annotation /// 0004008 // copper-exporting ATPase activity // not recorded /// 0004008 // copper-exporting ATPase activity // traceable author statement /// 0005375 // copper ion transmembrane transporter activity // inferred from direct assay /// 0005507 // copper ion binding // inferred from direct assay /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005507 // copper ion binding // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008270 // zinc ion binding // inferred from direct assay /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0043682 // copper-transporting ATPase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046873 // metal ion transmembrane transporter activity // inferred from electronic annotation 1369124_at NM_017254 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017254.1 /DB_XREF=gi:8393582 /GEN=Htr2a /FEA=FLmRNA /CNT=5 /TID=Rn.10294.1 /TIER=FL /STK=2 /UG=Rn.10294 /LL=29595 /DEF=Rattus norvegicus 5-hydroxytryptamine (serotonin) receptor 2 A (Htr2a), mRNA. /PROD=5-hydroxytryptamine (serotonin) receptor 2 A /FL=gb:NM_017254.1 gb:M30705.1 NM_017254 5-hydroxytryptamine (serotonin) receptor 2A Htr2a 29595 NM_017254 0001659 // temperature homeostasis // inferred from mutant phenotype /// 0006950 // response to stress // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007208 // activation of phospholipase C activity by serotonin receptor signaling pathway // inferred from direct assay /// 0007210 // serotonin receptor signaling pathway // not recorded /// 0007568 // aging // inferred from expression pattern /// 0007613 // memory // inferred from mutant phenotype /// 0008219 // cell death // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0014059 // regulation of dopamine secretion // inferred from mutant phenotype /// 0014065 // phosphoinositide 3-kinase cascade // not recorded /// 0019233 // sensory perception of pain // inferred from mutant phenotype /// 0030431 // sleep // inferred from mutant phenotype /// 0042493 // response to drug // inferred from mutant phenotype /// 0042493 // response to drug // not recorded /// 0043267 // negative regulation of potassium ion transport // inferred from mutant phenotype /// 0043406 // positive regulation of MAP kinase activity // inferred from mutant phenotype /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype /// 0046489 // phosphoinositide biosynthetic process // not recorded /// 0051209 // release of sequestered calcium ion into cytosol // not recorded /// 0051967 // negative regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype /// 0070371 // ERK1 and ERK2 cascade // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay 0004435 // phosphoinositide phospholipase C activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // not recorded /// 0008144 // drug binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction /// 0051378 // serotonin binding // inferred from electronic annotation /// 0051378 // serotonin binding // not recorded 1369125_at NM_017254 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017254.1 /DB_XREF=gi:8393582 /GEN=Htr2a /FEA=FLmRNA /CNT=5 /TID=Rn.10294.1 /TIER=ConsEnd /STK=0 /UG=Rn.10294 /LL=29595 /DEF=Rattus norvegicus 5-hydroxytryptamine (serotonin) receptor 2 A (Htr2a), mRNA. /PROD=5-hydroxytryptamine (serotonin) receptor 2 A /FL=gb:NM_017254.1 gb:M30705.1 NM_017254 5-hydroxytryptamine (serotonin) receptor 2A Htr2a 29595 NM_017254 0001659 // temperature homeostasis // inferred from mutant phenotype /// 0006950 // response to stress // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007208 // activation of phospholipase C activity by serotonin receptor signaling pathway // inferred from direct assay /// 0007210 // serotonin receptor signaling pathway // not recorded /// 0007568 // aging // inferred from expression pattern /// 0007613 // memory // inferred from mutant phenotype /// 0008219 // cell death // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0014059 // regulation of dopamine secretion // inferred from mutant phenotype /// 0014065 // phosphoinositide 3-kinase cascade // not recorded /// 0019233 // sensory perception of pain // inferred from mutant phenotype /// 0030431 // sleep // inferred from mutant phenotype /// 0042493 // response to drug // inferred from mutant phenotype /// 0042493 // response to drug // not recorded /// 0043267 // negative regulation of potassium ion transport // inferred from mutant phenotype /// 0043406 // positive regulation of MAP kinase activity // inferred from mutant phenotype /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype /// 0046489 // phosphoinositide biosynthetic process // not recorded /// 0051209 // release of sequestered calcium ion into cytosol // not recorded /// 0051967 // negative regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype /// 0070371 // ERK1 and ERK2 cascade // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay 0004435 // phosphoinositide phospholipase C activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // not recorded /// 0008144 // drug binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction /// 0051378 // serotonin binding // inferred from electronic annotation /// 0051378 // serotonin binding // not recorded 1369126_at NM_013115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013115.1 /DB_XREF=gi:6981435 /GEN=Ptgfr /FEA=FLmRNA /CNT=5 /TID=Rn.54873.1 /TIER=FL /STK=2 /UG=Rn.54873 /LL=25652 /DEF=Rattus norvegicus Prostaglandin F receptor (Ptgfr), mRNA. /PROD=prostaglandin F receptor /FL=gb:U47287.1 gb:U26663.1 gb:NM_013115.1 gb:D28581.1 NM_013115 prostaglandin F receptor Ptgfr 25652 NM_013115 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004958 // prostaglandin F receptor activity // inferred from electronic annotation 1369127_a_at X83856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X83856.1 /DB_XREF=gi:633625 /FEA=mRNA /CNT=1 /TID=Rn.54873.3 /TIER=ConsEnd /STK=0 /UG=Rn.54873 /LL=25652 /UG_GENE=Ptgfr /DEF=R.norvegicus mRNA for hepatocyte F2alpha receptor. /PROD=F2alpha receptor X83856 prostaglandin F receptor Ptgfr 25652 NM_013115 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004958 // prostaglandin F receptor activity // inferred from electronic annotation 1369128_at NM_017262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017262.1 /DB_XREF=gi:10242380 /GEN=Grik5 /FEA=FLmRNA /CNT=5 /TID=Rn.74042.1 /TIER=FL /STK=2 /UG=Rn.74042 /LL=24407 /DEF=Rattus norvegicus Glutamate receptor, ionotropic, kainate 5 (Grik5), mRNA. /PROD=glutamate receptor, ionotropic, kainate 5 /FL=gb:U08258.1 gb:NM_017262.1 gb:NM_031508.1 NM_017262 glutamate receptor, ionotropic, kainate 5 Grik5 24407 NM_031508 0006621 // protein retention in ER lumen // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007268 // synaptic transmission // inferred from direct assay /// 0031630 // regulation of synaptic vesicle fusion to presynaptic membrane // inferred from electronic annotation /// 0031630 // regulation of synaptic vesicle fusion to presynaptic membrane // not recorded /// 0035249 // synaptic transmission, glutamatergic // inferred from electronic annotation /// 0035249 // synaptic transmission, glutamatergic // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded /// 0043113 // receptor clustering // inferred from direct assay /// 0043526 // neuroprotection // inferred from mutant phenotype /// 0051649 // establishment of localization in cell // inferred from mutant phenotype /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded /// 0071333 // cellular response to glucose stimulus // inferred from expression pattern 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0008328 // ionotropic glutamate receptor complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0032983 // kainate selective glutamate receptor complex // inferred from electronic annotation /// 0032983 // kainate selective glutamate receptor complex // not recorded /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0042734 // presynaptic membrane // not recorded /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0045211 // postsynaptic membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008066 // glutamate receptor activity // inferred from direct assay /// 0015277 // kainate selective glutamate receptor activity // inferred from direct assay /// 0015277 // kainate selective glutamate receptor activity // not recorded /// 0015277 // kainate selective glutamate receptor activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from mutant phenotype /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction 1369129_at NM_019211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019211.1 /DB_XREF=gi:9507034 /GEN=Rasgrp1 /FEA=FLmRNA /CNT=5 /TID=Rn.14517.1 /TIER=FL /STK=2 /UG=Rn.14517 /LL=29434 /DEF=Rattus norvegicus RAS guanyl releasing protein 1 (Rasgrp1), mRNA. /PROD=RAS guanyl releasing protein 1 /FL=gb:AF081196.1 gb:AF060819.1 gb:NM_019211.1 NM_019211 RAS guanyl releasing protein 1 (calcium and DAG-regulated) Rasgrp1 29434 NM_019211 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017034 // Rap guanyl-nucleotide exchange factor activity // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 1369130_at AF081196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF081196.1 /DB_XREF=gi:3928856 /FEA=FLmRNA /CNT=5 /TID=Rn.14517.1 /TIER=FL /STK=1 /UG=Rn.14517 /LL=29434 /UG_GENE=Rasgrp1 /DEF=Rattus norvegicus calcium and DAG-regulated guanine nucleotide exchange factor II mRNA, complete cds. /PROD=calcium and DAG-regulated guanine nucleotideexchange factor II /FL=gb:AF081196.1 gb:AF060819.1 gb:NM_019211.1 AF081196 RAS guanyl releasing protein 1 (calcium and DAG-regulated) Rasgrp1 29434 NM_019211 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017034 // Rap guanyl-nucleotide exchange factor activity // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 1369131_at NM_013031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013031.1 /DB_XREF=gi:6981545 /GEN=Slc18a2 /FEA=FLmRNA /CNT=5 /TID=Rn.9686.1 /TIER=FL /STK=2 /UG=Rn.9686 /LL=25549 /DEF=Rattus norvegicus Solute carrier family 18 A2 (vesicular monoamine transporter 2) (Slc18a2), mRNA. /PROD=solute carrier family 18 A2 (vesicular monoaminetransporter 2) /FL=gb:L00603.1 gb:NM_013031.1 gb:M97381.1 NM_013031 solute carrier family 18 (vesicular monoamine), member 2 Slc18a2 25549 NM_013031 0001975 // response to amphetamine // inferred from electronic annotation /// 0001975 // response to amphetamine // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0007568 // aging // inferred from direct assay /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0009636 // response to toxin // inferred from electronic annotation /// 0009636 // response to toxin // not recorded /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0015842 // synaptic vesicle amine transport // traceable author statement /// 0015844 // monoamine transport // inferred from direct assay /// 0016265 // death // inferred from electronic annotation /// 0016265 // death // not recorded /// 0030073 // insulin secretion // inferred from direct assay /// 0042593 // glucose homeostasis // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0008021 // synaptic vesicle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031045 // dense core granule // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043679 // axon terminus // inferred from direct assay /// 0044297 // cell body // inferred from direct assay 0005275 // amine transmembrane transporter activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369132_at M97381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M97381.1 /DB_XREF=gi:207107 /GEN=SVAT /FEA=FLmRNA /CNT=5 /TID=Rn.9686.1 /TIER=FL /STK=1 /UG=Rn.9686 /LL=25549 /DEF=Rattus norvegicus synaptic vesicle amine transporter (SVAT) mRNA, complete cds. /PROD=synaptic vesicle amine transporter /FL=gb:L00603.1 gb:NM_013031.1 gb:M97381.1 M97381 solute carrier family 18 (vesicular monoamine), member 2 Slc18a2 25549 NM_013031 0001975 // response to amphetamine // inferred from electronic annotation /// 0001975 // response to amphetamine // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0007568 // aging // inferred from direct assay /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0009636 // response to toxin // inferred from electronic annotation /// 0009636 // response to toxin // not recorded /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0015842 // synaptic vesicle amine transport // traceable author statement /// 0015844 // monoamine transport // inferred from direct assay /// 0016265 // death // inferred from electronic annotation /// 0016265 // death // not recorded /// 0030073 // insulin secretion // inferred from direct assay /// 0042593 // glucose homeostasis // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0008021 // synaptic vesicle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031045 // dense core granule // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043679 // axon terminus // inferred from direct assay /// 0044297 // cell body // inferred from direct assay 0005275 // amine transmembrane transporter activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369133_a_at NM_053997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053997.1 /DB_XREF=gi:16758905 /GEN=Kcnc3 /FEA=FLmRNA /CNT=5 /TID=Rn.9885.1 /TIER=FL /STK=2 /UG=Rn.9885 /LL=117101 /DEF=Rattus norvegicus potassium voltage gated channel, Shaw-related subfamily, member 3 (Kcnc3), mRNA. /PROD=potassium voltage gated channel, Shaw-relatedsubfamily, member 3 /FL=gb:NM_053997.1 gb:M84211.1 NM_053997 potassium voltage gated channel, Shaw-related subfamily, member 3 Kcnc3 117101 NM_053997 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1369134_x_at NM_053997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053997.1 /DB_XREF=gi:16758905 /GEN=Kcnc3 /FEA=FLmRNA /CNT=5 /TID=Rn.9885.1 /TIER=FL /STK=2 /UG=Rn.9885 /LL=117101 /DEF=Rattus norvegicus potassium voltage gated channel, Shaw-related subfamily, member 3 (Kcnc3), mRNA. /PROD=potassium voltage gated channel, Shaw-relatedsubfamily, member 3 /FL=gb:NM_053997.1 gb:M84211.1 NM_053997 potassium voltage gated channel, Shaw-related subfamily, member 3 Kcnc3 117101 NM_053997 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1369135_at NM_031667 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031667.1 /DB_XREF=gi:13928923 /GEN=Syt11 /FEA=FLmRNA /CNT=5 /TID=Rn.9805.1 /TIER=FL /STK=2 /UG=Rn.9805 /LL=60568 /DEF=Rattus norvegicus synaptotagmin 11 (Syt11), mRNA. /PROD=synaptotagmin 11 /FL=gb:AF375465.1 gb:AF000423.1 gb:NM_031667.1 NM_031667 synaptotagmin XI Syt11 60568 NM_031667 0006810 // transport // inferred from electronic annotation 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0008021 // synaptic vesicle // traceable author statement /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005544 // calcium-dependent phospholipid binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1369136_at NM_012542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012542.1 /DB_XREF=gi:6978742 /GEN=Cyp2a3a /FEA=FLmRNA /CNT=5 /TID=Rn.2063.1 /TIER=FL /STK=2 /UG=Rn.2063 /LL=24299 /DEF=Rattus norvegicus Cytochrome P450, subfamily IIA (phenobarbital-inducble) (Cytochrome P450 IIA3) (Cyp2a3a), mRNA. /PROD=cytochrome P450, subfamily IIA(phenobarbital-inducble) (Cytochrome P450 IIA3) /FL=gb:NM_012542.1 NM_012542 cytochrome P450, family 2, subfamily a, polypeptide 3 Cyp2a3 24299 NM_012542 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // traceable author statement /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0019825 // oxygen binding // traceable author statement /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1369137_at NM_017194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017194.1 /DB_XREF=gi:8393128 /GEN=Chrne /FEA=FLmRNA /CNT=5 /TID=Rn.10301.1 /TIER=FL /STK=2 /UG=Rn.10301 /LL=29422 /DEF=Rattus norvegicus acetylcholine receptor epsilon (Chrne), mRNA. /PROD=acetylcholine receptor epsilon /FL=gb:NM_017194.1 NM_017194 cholinergic receptor, nicotinic, epsilon Chrne 29422 NM_017194 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from mutant phenotype /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0045211 // postsynaptic membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // not recorded /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation 1369138_a_at AF343575 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF343575.1 /DB_XREF=gi:18478869 /FEA=FLmRNA /CNT=1 /TID=Rn.48668.3 /TIER=FL /STK=1 /UG=Rn.48668 /LL=56816 /UG_GENE=Park2 /DEF=Rattus norvegicus parkin transcript variant 7 mRNA, complete cds. /PROD=parkin transcript variant 7 /FL=gb:AF343575.1 AF343575 Parkinson disease (autosomal recessive, juvenile) 2, parkin Park2 56816 NM_020093 0000209 // protein polyubiquitination // not recorded /// 0001933 // negative regulation of protein phosphorylation // not recorded /// 0001963 // synaptic transmission, dopaminergic // not recorded /// 0001964 // startle response // not recorded /// 0006464 // protein modification process // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0006986 // response to unfolded protein // inferred from direct assay /// 0007612 // learning // not recorded /// 0007626 // locomotory behavior // not recorded /// 0008344 // adult locomotory behavior // not recorded /// 0019538 // protein metabolic process // not recorded /// 0032232 // negative regulation of actin filament bundle assembly // not recorded /// 0035249 // synaptic transmission, glutamatergic // not recorded /// 0042415 // norepinephrine metabolic process // not recorded /// 0042417 // dopamine metabolic process // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042551 // neuron maturation // inferred from expression pattern /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0046928 // regulation of neurotransmitter secretion // not recorded /// 0050804 // regulation of synaptic transmission // not recorded /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0051583 // dopamine uptake // not recorded /// 0051865 // protein autoubiquitination // not recorded /// 0060548 // negative regulation of cell death // not recorded /// 0070534 // protein K63-linked ubiquitination // not recorded /// 0070842 // aggresome assembly // not recorded /// 0080010 // regulation of oxygen and reactive oxygen species metabolic process // not recorded /// 0090201 // negative regulation of release of cytochrome c from mitochondria // not recorded 0000139 // Golgi membrane // inferred from direct assay /// 0005622 // intracellular // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016235 // aggresome // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0043234 // protein complex // not recorded /// 0045121 // membrane raft // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // traceable author statement /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019900 // kinase binding // not recorded /// 0030165 // PDZ domain binding // not recorded /// 0032403 // protein complex binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051087 // chaperone binding // not recorded 1369139_at M33530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M33530.1 /DB_XREF=gi:202524 /FEA=FLmRNA /CNT=5 /TID=Rn.9739.1 /TIER=FL /STK=2 /UG=Rn.9739 /LL=25343 /UG_GENE=Pdc /UG_TITLE=Phototransducing protein, 33 kDa (phosducin) /DEF=Rat 33-kDa phototransducing protein mRNA, complete cds. /FL=gb:M33528.1 gb:NM_012872.1 gb:M33530.1 gb:M60738.1 M33530 phosducin Pdc 25343 NM_012872 0007601 // visual perception // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0001750 // photoreceptor outer segment // not recorded /// 0001917 // photoreceptor inner segment // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 1369140_at NM_080901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080901.1 /DB_XREF=gi:18266709 /GEN=Rcvrn /FEA=FLmRNA /CNT=5 /TID=Rn.38641.1 /TIER=FL /STK=2 /UG=Rn.38641 /DEF=Rattus norvegicus recoverin (Rcvrn), mRNA. /PROD=recoverin /FL=gb:NM_080901.1 gb:AY063482.1 NM_080901 recoverin Rcvrn 140936 NM_080901 0007601 // visual perception // not recorded /// 0007601 // visual perception // traceable author statement /// 0007601 // visual perception // inferred from electronic annotation /// 0007602 // phototransduction // inferred from electronic annotation /// 0007602 // phototransduction // not recorded /// 0051924 // regulation of calcium ion transport // inferred from electronic annotation /// 0051924 // regulation of calcium ion transport // not recorded 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation 1369141_at NM_017363 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017363.1 /DB_XREF=gi:8393967 /GEN=Pl1 /FEA=FLmRNA /CNT=5 /TID=Rn.40126.1 /TIER=FL /STK=2 /UG=Rn.40126 /LL=53950 /DEF=Rattus norvegicus placental lactogen 1 (Pl1), mRNA. /PROD=placental lactogen 1 /FL=gb:D21103.1 gb:M55269.1 gb:NM_017363.1 NM_017363 Prolactin family 3, subfamily d, member 1 Prl3d1 53950 NM_017363 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005179 // hormone activity // inferred from electronic annotation 1369142_at NM_013414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013414.1 /DB_XREF=gi:11761542 /GEN=Bgp /FEA=FLmRNA /CNT=5 /TID=Rn.9722.1 /TIER=FL /STK=2 /UG=Rn.9722 /LL=25295 /DEF=Rattus norvegicus Bone gamma-carboxyglutamic acid (Gla) protein (osteocalcin) (Bgp), mRNA. /PROD=osteocalcin /FL=gb:NM_013414.1 gb:M11777.1 NM_013414 bone gamma-carboxyglutamate (gla) protein Bglap 25295 NM_013414 0001503 // ossification // inferred from expression pattern /// 0001649 // osteoblast differentiation // inferred from expression pattern /// 0001649 // osteoblast differentiation // not recorded /// 0001649 // osteoblast differentiation // traceable author statement /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0002076 // osteoblast development // inferred from expression pattern /// 0007569 // cell aging // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009629 // response to gravity // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010043 // response to zinc ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014823 // response to activity // inferred from expression pattern /// 0030500 // regulation of bone mineralization // inferred from electronic annotation /// 0031214 // biomineral tissue development // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0033280 // response to vitamin D // not recorded /// 0033280 // response to vitamin D // inferred from electronic annotation /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0033594 // response to hydroxyisoflavone // inferred from expression pattern /// 0042476 // odontogenesis // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0060348 // bone development // inferred from expression pattern /// 0071305 // cellular response to vitamin D // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0031988 // membrane-bounded vesicle // inferred from direct assay /// 0042995 // cell projection // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0008147 // structural constituent of bone // inferred from direct assay /// 0008147 // structural constituent of bone // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 1369143_at NM_133597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133597.1 /DB_XREF=gi:19424303 /GEN=Chrnb3 /FEA=FLmRNA /CNT=6 /TID=Rn.9694.1 /TIER=FL /STK=2 /UG=Rn.9694 /LL=171131 /DEF=Rattus norvegicus cholinergic receptor, nicotinic, beta polypeptide 3 (Chrnb3), mRNA. /PROD=cholinergic receptor, nicotinic, betapolypeptide 3 /FL=gb:NM_133597.1 gb:J04636.1 NM_133597 cholinergic receptor, nicotinic, beta 3 Chrnb3 171131 NM_133597 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from direct assay 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from direct assay /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred by curator /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0042166 // acetylcholine binding // inferred from direct assay 1369144_a_at NM_031739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031739.1 /DB_XREF=gi:13929039 /GEN=Kcnd3 /FEA=FLmRNA /CNT=5 /TID=Rn.10540.1 /TIER=FL /STK=2 /UG=Rn.10540 /LL=65195 /DEF=Rattus norvegicus potassium voltage gated channel, Shal-related family, member 2 (Kcnd3), mRNA. /PROD=potassium voltage gated channel, Shal-relatedfamily, member 2 /FL=gb:U42975.1 gb:U75448.1 gb:NM_031739.1 NM_031739 potassium voltage-gated channel, Shal-related subfamily, member 3 Kcnd3 65195 NM_031739 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // traceable author statement /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0005216 // ion channel activity // inferred from direct assay /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from direct assay /// 0005249 // voltage-gated potassium channel activity // inferred from mutant phenotype /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005250 // A-type (transient outward) potassium channel activity // inferred from mutant phenotype /// 0005267 // potassium channel activity // inferred from direct assay /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369145_a_at AB003587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB003587.1 /DB_XREF=gi:2815399 /FEA=FLmRNA /CNT=3 /TID=Rn.10540.3 /TIER=FL /STK=2 /UG=Rn.10540 /LL=65195 /UG_GENE=Kcnd3 /DEF=Rattus norvegicus mRNA for Kv4.3, complete cds. /PROD=Kv4.3 /FL=gb:AF334791.1 gb:AB003587.1 AB003587 potassium voltage-gated channel, Shal-related subfamily, member 3 Kcnd3 65195 NM_031739 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // traceable author statement /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0005216 // ion channel activity // inferred from direct assay /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from direct assay /// 0005249 // voltage-gated potassium channel activity // inferred from mutant phenotype /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005250 // A-type (transient outward) potassium channel activity // inferred from mutant phenotype /// 0005267 // potassium channel activity // inferred from direct assay /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369146_a_at AF082125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF082125.1 /DB_XREF=gi:3561053 /GEN=AHR /FEA=FLmRNA /CNT=5 /TID=Rn.2769.1 /TIER=FL /STK=2 /UG=Rn.2769 /LL=25690 /DEF=Rattus norvegicus aryl hydrocarbon receptor (AHR) mRNA, alternatively spliced shorter insertion variant, complete cds. /PROD=aryl hydrocarbon receptor /FL=gb:U09000.1 gb:U04860.1 gb:NM_013149.1 gb:AF082125.1 AF082125 aryl hydrocarbon receptor Ahr 25690 NM_013149 0001541 // ovarian follicle development // inferred from mutant phenotype /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // traceable author statement /// 0006950 // response to stress // inferred from direct assay /// 0006950 // response to stress // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0007049 // cell cycle // not recorded /// 0007049 // cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0009410 // response to xenobiotic stimulus // inferred from direct assay /// 0009410 // response to xenobiotic stimulus // not recorded /// 0009410 // response to xenobiotic stimulus // traceable author statement /// 0009410 // response to xenobiotic stimulus // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from mutant phenotype /// 0030850 // prostate gland development // inferred from electronic annotation /// 0030850 // prostate gland development // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045899 // positive regulation of RNA polymerase II transcriptional preinitiation complex assembly // inferred from electronic annotation /// 0045899 // positive regulation of RNA polymerase II transcriptional preinitiation complex assembly // not recorded /// 0048608 // reproductive structure development // not recorded /// 0048608 // reproductive structure development // inferred from electronic annotation /// 0048732 // gland development // not recorded /// 0048732 // gland development // inferred from electronic annotation /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004874 // aryl hydrocarbon receptor activity // inferred from direct assay /// 0004874 // aryl hydrocarbon receptor activity // traceable author statement /// 0004879 // ligand-dependent nuclear receptor activity // inferred from direct assay /// 0004879 // ligand-dependent nuclear receptor activity // not recorded /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046982 // protein heterodimerization activity // not recorded /// 0051879 // Hsp90 protein binding // inferred from electronic annotation /// 0051879 // Hsp90 protein binding // not recorded 1369147_at NM_013149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013149.1 /DB_XREF=gi:6978474 /GEN=Ahr /FEA=FLmRNA /CNT=5 /TID=Rn.2769.1 /TIER=FL /STK=2 /UG=Rn.2769 /LL=25690 /DEF=Rattus norvegicus Aryl hydrocarbon receptor (Ahr), mRNA. /PROD=aryl hydrocarbon receptor /FL=gb:U09000.1 gb:U04860.1 gb:NM_013149.1 gb:AF082125.1 NM_013149 aryl hydrocarbon receptor Ahr 25690 NM_013149 0001541 // ovarian follicle development // inferred from mutant phenotype /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // traceable author statement /// 0006950 // response to stress // inferred from direct assay /// 0006950 // response to stress // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0007049 // cell cycle // not recorded /// 0007049 // cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0009410 // response to xenobiotic stimulus // inferred from direct assay /// 0009410 // response to xenobiotic stimulus // not recorded /// 0009410 // response to xenobiotic stimulus // traceable author statement /// 0009410 // response to xenobiotic stimulus // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from mutant phenotype /// 0030850 // prostate gland development // inferred from electronic annotation /// 0030850 // prostate gland development // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045899 // positive regulation of RNA polymerase II transcriptional preinitiation complex assembly // inferred from electronic annotation /// 0045899 // positive regulation of RNA polymerase II transcriptional preinitiation complex assembly // not recorded /// 0048608 // reproductive structure development // not recorded /// 0048608 // reproductive structure development // inferred from electronic annotation /// 0048732 // gland development // not recorded /// 0048732 // gland development // inferred from electronic annotation /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004874 // aryl hydrocarbon receptor activity // inferred from direct assay /// 0004874 // aryl hydrocarbon receptor activity // traceable author statement /// 0004879 // ligand-dependent nuclear receptor activity // inferred from direct assay /// 0004879 // ligand-dependent nuclear receptor activity // not recorded /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046982 // protein heterodimerization activity // not recorded /// 0051879 // Hsp90 protein binding // inferred from electronic annotation /// 0051879 // Hsp90 protein binding // not recorded 1369148_at NM_012669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012669.1 /DB_XREF=gi:6981637 /GEN=Tcf1 /FEA=FLmRNA /CNT=5 /TID=Rn.9660.1 /TIER=FL /STK=2 /UG=Rn.9660 /LL=24817 /DEF=Rattus norvegicus Transcription factor 1, hepatic; LF-B1, hepatic nuclear factor (HNF1): albumin proximal factor, also TCF1 (Tcf1), mRNA. /PROD=transcription factor 1, hepatic; LF-B1, hepaticnuclear factor (HNF1): albumin proximal factor, also TCF1 /FL=gb:NM_012669.1 gb:J03170.1 NM_012669 HNF1 homeobox A Hnf1a 24817 NM_012669 0001824 // blastocyst development // inferred from electronic annotation /// 0001824 // blastocyst development // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0001890 // placenta development // inferred from electronic annotation /// 0001890 // placenta development // not recorded /// 0006338 // chromatin remodeling // inferred from electronic annotation /// 0006338 // chromatin remodeling // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // not recorded /// 0006699 // bile acid biosynthetic process // inferred from electronic annotation /// 0006699 // bile acid biosynthetic process // not recorded /// 0006783 // heme biosynthetic process // inferred from electronic annotation /// 0006783 // heme biosynthetic process // not recorded /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0009749 // response to glucose stimulus // inferred from electronic annotation /// 0009749 // response to glucose stimulus // not recorded /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0015721 // bile acid and bile salt transport // inferred from electronic annotation /// 0015721 // bile acid and bile salt transport // not recorded /// 0015908 // fatty acid transport // inferred from electronic annotation /// 0015908 // fatty acid transport // not recorded /// 0016481 // negative regulation of transcription // inferred from mutant phenotype /// 0030073 // insulin secretion // not recorded /// 0030073 // insulin secretion // inferred from electronic annotation /// 0030111 // regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030111 // regulation of Wnt receptor signaling pathway // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0031018 // endocrine pancreas development // inferred from electronic annotation /// 0031018 // endocrine pancreas development // not recorded /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042593 // glucose homeostasis // not recorded /// 0043691 // reverse cholesterol transport // inferred from electronic annotation /// 0043691 // reverse cholesterol transport // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045453 // bone resorption // inferred from electronic annotation /// 0045453 // bone resorption // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from physical interaction /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-dependent // traceable author statement /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046883 // regulation of hormone secretion // inferred from electronic annotation /// 0046883 // regulation of hormone secretion // not recorded /// 0048341 // paraxial mesoderm formation // inferred from electronic annotation /// 0048341 // paraxial mesoderm formation // not recorded /// 0048608 // reproductive structure development // inferred from electronic annotation /// 0048608 // reproductive structure development // not recorded /// 0050796 // regulation of insulin secretion // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // not recorded /// 0060395 // SMAD protein signal transduction // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // not recorded 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0001750 // photoreceptor outer segment // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from electronic annotation /// 0045120 // pronucleus // inferred from electronic annotation /// 0045120 // pronucleus // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003704 // specific RNA polymerase II transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from sequence or structural similarity /// 0010843 // promoter binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // traceable author statement /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // inferred from mutant phenotype /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0046983 // protein dimerization activity // not recorded /// 0046983 // protein dimerization activity // inferred from electronic annotation 1369149_at NM_031727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031727.1 /DB_XREF=gi:13929021 /GEN=Limk1 /FEA=FLmRNA /CNT=5 /TID=Rn.11250.1 /TIER=FL /STK=2 /UG=Rn.11250 /LL=65172 /DEF=Rattus norvegicus LIM-domain containing, protein kinase (Limk1), mRNA. /PROD=LIM-domain containing, protein kinase /FL=gb:NM_031727.1 gb:D31873.1 NM_031727 LIM domain kinase 1 Limk1 65172 NM_031727 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0032233 // positive regulation of actin filament bundle assembly // not recorded /// 0045773 // positive regulation of axon extension // not recorded /// 0045773 // positive regulation of axon extension // inferred from sequence or structural similarity /// 0045773 // positive regulation of axon extension // inferred from electronic annotation /// 0051444 // negative regulation of ubiquitin-protein ligase activity // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0030426 // growth cone // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0043005 // neuron projection // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0031072 // heat shock protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1369150_at NM_053551 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053551.1 /DB_XREF=gi:16758317 /GEN=Pdk4 /FEA=FLmRNA /CNT=5 /TID=Rn.30070.1 /TIER=FL /STK=2 /UG=Rn.30070 /LL=89813 /DEF=Rattus norvegicus pyruvate dehydrogenase kinase, isoenzyme 4 (Pdk4), mRNA. /PROD=pyruvate dehydrogenase kinase, isoenzyme 4 /FL=gb:AF034577.1 gb:NM_053551.1 NM_053551 pyruvate dehydrogenase kinase, isozyme 4 Pdk4 89813 NM_053551 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006086 // acetyl-CoA biosynthetic process from pyruvate // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0010510 // regulation of acetyl-CoA biosynthetic process from pyruvate // not recorded /// 0018106 // peptidyl-histidine phosphorylation // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0000155 // two-component sensor activity // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004673 // protein histidine kinase activity // inferred from electronic annotation /// 0004740 // pyruvate dehydrogenase (acetyl-transferring) kinase activity // inferred from direct assay /// 0004740 // pyruvate dehydrogenase (acetyl-transferring) kinase activity // inferred from mutant phenotype /// 0004740 // pyruvate dehydrogenase (acetyl-transferring) kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1369151_at NM_053744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053744.1 /DB_XREF=gi:16758571 /GEN=Dlk1 /FEA=FLmRNA /CNT=5 /TID=Rn.14547.1 /TIER=FL /STK=2 /UG=Rn.14547 /LL=114587 /DEF=Rattus norvegicus delta-like homolog (Drosophila) (Dlk1), mRNA. /PROD=delta-like homolog (Drosophila) /FL=gb:NM_053744.1 gb:U25680.1 gb:D84336.1 NM_053744 delta-like 1 homolog (Drosophila) Dlk1 114587 NM_053744 0009790 // embryo development // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from direct assay /// 0048706 // embryonic skeletal system development // not recorded /// 0048706 // embryonic skeletal system development // inferred from electronic annotation 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1369152_at NM_017309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017309.1 /DB_XREF=gi:8394035 /GEN=Ppp3r1 /FEA=FLmRNA /CNT=5 /TID=Rn.42903.1 /TIER=FL /STK=2 /UG=Rn.42903 /LL=29748 /DEF=Rattus norvegicus protein phospatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I) (Ppp3r1), mRNA. /PROD=protein phospatase 3, regulatory subunit B,alpha isoform (calcineurin B, type I) /FL=gb:L03554.1 gb:NM_017309.1 gb:D14568.1 NM_017309 protein phosphatase 3, regulatory subunit B, alpha isoform Ppp3r1 29748 NM_017309 0001837 // epithelial to mesenchymal transition // not recorded /// 0006470 // protein dephosphorylation // inferred from direct assay /// 0007507 // heart development // not recorded /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0034504 // protein localization in nucleus // not recorded /// 0060487 // lung epithelial cell differentiation // not recorded 0005829 // cytosol // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1369153_at NM_022628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022628.1 /DB_XREF=gi:12018317 /GEN=Nphs1 /FEA=FLmRNA /CNT=4 /TID=Rn.48745.1 /TIER=FL /STK=2 /UG=Rn.48745 /LL=64563 /DEF=Rattus norvegicus nephrin (Nphs1), mRNA. /PROD=nephrin /FL=gb:NM_022628.1 gb:AF172255.1 gb:AF125521.1 gb:AF161715.1 NM_022628 nephrosis 1 homolog (human) Nphs1 64563 NM_022628 0000165 // MAPKKK cascade // not recorded /// 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007254 // JNK cascade // inferred from electronic annotation /// 0007254 // JNK cascade // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030507 // spectrin binding // inferred from physical interaction /// 0051393 // alpha-actinin binding // inferred from physical interaction 1369154_at AF172255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF172255.1 /DB_XREF=gi:9651181 /FEA=FLmRNA /CNT=4 /TID=Rn.48745.1 /TIER=FL /STK=1 /UG=Rn.48745 /LL=64563 /UG_GENE=Nphs1 /DEF=Rattus norvegicus nephrin mRNA, complete cds. /PROD=nephrin /FL=gb:NM_022628.1 gb:AF172255.1 gb:AF125521.1 gb:AF161715.1 AF172255 nephrosis 1 homolog (human) Nphs1 64563 NM_022628 0000165 // MAPKKK cascade // not recorded /// 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007254 // JNK cascade // inferred from electronic annotation /// 0007254 // JNK cascade // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030507 // spectrin binding // inferred from physical interaction /// 0051393 // alpha-actinin binding // inferred from physical interaction 1369155_at NM_053879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053879.1 /DB_XREF=gi:16758745 /GEN=Axcam /FEA=FLmRNA /CNT=4 /TID=Rn.10117.1 /TIER=FL /STK=2 /UG=Rn.10117 /LL=116658 /DEF=Rattus norvegicus axonal-associated cell adhesion molecule (Axcam), mRNA. /PROD=axonal-associated cell adhesion molecule /FL=gb:U35371.1 gb:NM_053879.1 NM_053879 contactin 4 Cntn4 116658 NM_053879 0007155 // cell adhesion // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from sequence or structural similarity /// 0007399 // nervous system development // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0031175 // neuron projection development // inferred from direct assay /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045665 // negative regulation of neuron differentiation // inferred from sequence or structural similarity /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369156_at NM_024368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024368.1 /DB_XREF=gi:13242262 /GEN=Frk /FEA=FLmRNA /CNT=4 /TID=Rn.10556.1 /TIER=FL /STK=2 /UG=Rn.10556 /LL=79209 /DEF=Rattus norvegicus src related tyrosine kinase (Frk), mRNA. /PROD=src related tyrosine kinase /FL=gb:NM_024368.1 gb:U09583.1 NM_024368 fyn-related kinase Frk 79209 NM_024368 0006468 // protein phosphorylation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1369157_at NM_017229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017229.1 /DB_XREF=gi:8393928 /GEN=Pde3b /FEA=FLmRNA /CNT=4 /TID=Rn.10322.1 /TIER=FL /STK=2 /UG=Rn.10322 /LL=29516 /DEF=Rattus norvegicus phosphodiesterase 3B, cGMP-inhibited (Pde3b), mRNA. /PROD=phosphodiesterase 3B, cGMP-inhibited /FL=gb:NM_017229.1 gb:Z22867.1 NM_017229 phosphodiesterase 3B, cGMP-inhibited Pde3b 29516 NM_017229 0006198 // cAMP catabolic process // inferred from direct assay /// 0006198 // cAMP catabolic process // inferred from mutant phenotype /// 0006198 // cAMP catabolic process // not recorded /// 0006198 // cAMP catabolic process // inferred from electronic annotation /// 0007162 // negative regulation of cell adhesion // inferred from electronic annotation /// 0007162 // negative regulation of cell adhesion // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0031018 // endocrine pancreas development // inferred from electronic annotation /// 0031018 // endocrine pancreas development // not recorded /// 0032869 // cellular response to insulin stimulus // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from sequence or structural similarity /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042593 // glucose homeostasis // not recorded /// 0046676 // negative regulation of insulin secretion // inferred from mutant phenotype /// 0050796 // regulation of insulin secretion // not recorded /// 0050796 // regulation of insulin secretion // inferred from electronic annotation /// 0050995 // negative regulation of lipid catabolic process // inferred from electronic annotation /// 0050995 // negative regulation of lipid catabolic process // not recorded 0005626 // insoluble fraction // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032045 // guanyl-nucleotide exchange factor complex // inferred from electronic annotation /// 0032045 // guanyl-nucleotide exchange factor complex // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from direct assay /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from mutant phenotype /// 0004119 // cGMP-inhibited cyclic-nucleotide phosphodiesterase activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030552 // cAMP binding // inferred from direct assay /// 0043422 // protein kinase B binding // not recorded /// 0043422 // protein kinase B binding // inferred from sequence or structural similarity /// 0043422 // protein kinase B binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // inferred from direct assay 1369158_at NM_016996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_016996.1 /DB_XREF=gi:8393052 /GEN=Casr /FEA=FLmRNA /CNT=4 /TID=Rn.10019.1 /TIER=FL /STK=2 /UG=Rn.10019 /LL=24247 /DEF=Rattus norvegicus Calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism) (Casr), mRNA. /PROD=calcium-sensing receptor (hypocalciurichypercalcemia 1, severe neonatal hyperparathyroidism) /FL=gb:NM_016996.1 gb:U10354.1 gb:U20289.1 NM_016996 calcium-sensing receptor Casr 24247 NM_016996 0001503 // ossification // inferred from mutant phenotype /// 0005513 // detection of calcium ion // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from mutant phenotype /// 0006874 // cellular calcium ion homeostasis // inferred from direct assay /// 0006874 // cellular calcium ion homeostasis // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007254 // JNK cascade // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0019722 // calcium-mediated signaling // inferred from electronic annotation /// 0032781 // positive regulation of ATPase activity // inferred from electronic annotation /// 0032781 // positive regulation of ATPase activity // not recorded /// 0042311 // vasodilation // inferred from mutant phenotype /// 0051924 // regulation of calcium ion transport // inferred from electronic annotation /// 0051924 // regulation of calcium ion transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043679 // axon terminus // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from mutant phenotype /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1369159_at NM_012502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012502.1 /DB_XREF=gi:6978534 /GEN=Ar /FEA=FLmRNA /CNT=4 /TID=Rn.9813.1 /TIER=FL /STK=2 /UG=Rn.9813 /LL=24208 /DEF=Rattus norvegicus Androgen receptor (Testicular feminization) (Ar), mRNA. /PROD=androgen receptor (Testicular feminization),same as Tfm /FL=gb:NM_012502.1 gb:M20133.1 gb:M23264.1 NM_012502 androgen receptor Ar 24208 NM_012502 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006351 // transcription, DNA-dependent // not recorded /// 0006351 // transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0008584 // male gonad development // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0009987 // cellular process // inferred from electronic annotation /// 0009987 // cellular process // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0019102 // male somatic sex determination // inferred from electronic annotation /// 0019102 // male somatic sex determination // not recorded /// 0030521 // androgen receptor signaling pathway // inferred from mutant phenotype /// 0030521 // androgen receptor signaling pathway // not recorded /// 0030521 // androgen receptor signaling pathway // inferred from electronic annotation /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0033148 // positive regulation of estrogen receptor signaling pathway // inferred from electronic annotation /// 0033148 // positive regulation of estrogen receptor signaling pathway // not recorded /// 0043401 // steroid hormone mediated signaling pathway // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0043568 // positive regulation of insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0043568 // positive regulation of insulin-like growth factor receptor signaling pathway // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046661 // male sex differentiation // inferred from mutant phenotype /// 0048608 // reproductive structure development // inferred from electronic annotation /// 0048608 // reproductive structure development // not recorded /// 0048638 // regulation of developmental growth // inferred from electronic annotation /// 0048638 // regulation of developmental growth // not recorded /// 0048645 // organ formation // inferred from electronic annotation /// 0048645 // organ formation // not recorded /// 0048808 // male genitalia morphogenesis // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded /// 0060520 // activation of prostate induction by androgen receptor signaling pathway // inferred from electronic annotation /// 0060520 // activation of prostate induction by androgen receptor signaling pathway // not recorded /// 0060571 // morphogenesis of an epithelial fold // inferred from electronic annotation /// 0060571 // morphogenesis of an epithelial fold // not recorded /// 0060599 // lateral sprouting involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060599 // lateral sprouting involved in mammary gland duct morphogenesis // not recorded /// 0060685 // regulation of prostatic bud formation // inferred from electronic annotation /// 0060685 // regulation of prostatic bud formation // not recorded /// 0060736 // prostate gland growth // inferred from electronic annotation /// 0060736 // prostate gland growth // not recorded /// 0060740 // prostate gland epithelium morphogenesis // inferred from electronic annotation /// 0060740 // prostate gland epithelium morphogenesis // not recorded /// 0060742 // epithelial cell differentiation involved in prostate gland development // inferred from electronic annotation /// 0060742 // epithelial cell differentiation involved in prostate gland development // not recorded /// 0060748 // tertiary branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060748 // tertiary branching involved in mammary gland duct morphogenesis // not recorded /// 0060749 // mammary gland alveolus development // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay 0003677 // DNA binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004882 // androgen receptor activity // inferred from direct assay /// 0004882 // androgen receptor activity // not recorded /// 0004882 // androgen receptor activity // inferred from sequence or structural similarity /// 0004882 // androgen receptor activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005496 // steroid binding // inferred from electronic annotation /// 0005497 // androgen binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from direct assay /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // inferred from physical interaction /// 0070974 // POU domain binding // inferred from electronic annotation /// 0070974 // POU domain binding // not recorded 1369160_a_at AF070475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF070475.1 /DB_XREF=gi:5669563 /GEN=NBC2 /FEA=FLmRNA /CNT=1 /TID=Rn.26856.3 /TIER=FL /STK=1 /UG=Rn.26856 /LL=117955 /DEF=Rattus norvegicus NBC-like protein 2 (NBC2) mRNA, complete cds. /PROD=NBC-like protein 2 /FL=gb:AF070475.1 AF070475 solute carrier family 4, sodium bicarbonate cotransporter, member 7 Slc4a7 117955 NM_058211 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006820 // anion transport // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0032420 // stereocilium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005452 // inorganic anion exchanger activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008509 // anion transmembrane transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation 1369161_at NM_012690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012690.1 /DB_XREF=gi:6981353 /GEN=Abcb4 /FEA=FLmRNA /CNT=4 /TID=Rn.9679.1 /TIER=FL /STK=2 /UG=Rn.9679 /LL=24891 /DEF=Rattus norvegicus ATP-binding cassette, sub-family B (MDRTAP), member 4 (P-glycoprotein 3 multidrug resistance 2 (Abcb4), mRNA. /PROD=ATP-binding cassette, sub-family B (MDRTAP),member 4 (P-glycoprotein 3 multidrug resistance 2 /FL=gb:L15079.1 gb:NM_012690.1 NM_012690 ATP-binding cassette, sub-family B (MDR/TAP), member 4 Abcb4 24891 NM_012690 0006810 // transport // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0055085 // transmembrane transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from direct assay /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0046581 // intercellular canaliculus // inferred from electronic annotation /// 0046581 // intercellular canaliculus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008559 // xenobiotic-transporting ATPase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 1369162_at NM_013170 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013170.1 /DB_XREF=gi:6980999 /GEN=Gucy2c /FEA=FLmRNA /CNT=4 /TID=Rn.10931.1 /TIER=FL /STK=2 /UG=Rn.10931 /LL=25711 /DEF=Rattus norvegicus Guanylate cyclase 2C (heat stable enterotoxin receptor) (Gucy2c), mRNA. /PROD=guanylate cyclase 2C (heat stable enterotoxinreceptor) /FL=gb:NM_013170.1 gb:M55636.1 NM_013170 guanylate cyclase 2C Gucy2c 25711 NM_013170 0006182 // cGMP biosynthetic process // not recorded /// 0006182 // cGMP biosynthetic process // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0009636 // response to toxin // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // inferred from direct assay /// 0004383 // guanylate cyclase activity // not recorded /// 0004383 // guanylate cyclase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0015643 // toxin binding // inferred from direct assay /// 0016829 // lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation 1369163_at NM_012572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012572.1 /DB_XREF=gi:10242376 /GEN=Grik4 /FEA=FLmRNA /CNT=4 /TID=Rn.10049.1 /TIER=FL /STK=2 /UG=Rn.10049 /LL=24406 /DEF=Rattus norvegicus Glutamate receptor, ionotropic, kainate 4 (Grik4), mRNA. /PROD=glutamate receptor, ionotropic, kainate 4 /FL=gb:NM_012572.1 gb:U08257.1 NM_012572 glutamate receptor, ionotropic, kainate 4 Grik4 24406 NM_012572 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // traceable author statement /// 0006811 // ion transport // inferred from electronic annotation /// 0007268 // synaptic transmission // traceable author statement /// 0031960 // response to corticosteroid stimulus // inferred from expression pattern 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0008328 // ionotropic glutamate receptor complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0032983 // kainate selective glutamate receptor complex // inferred from electronic annotation /// 0032983 // kainate selective glutamate receptor complex // not recorded /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0042734 // presynaptic membrane // not recorded /// 0043195 // terminal button // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0045211 // postsynaptic membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // traceable author statement /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015277 // kainate selective glutamate receptor activity // traceable author statement 1369164_a_at AF288407 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF288407.1 /DB_XREF=gi:10697339 /FEA=FLmRNA /CNT=2 /TID=Rn.10853.4 /TIER=FL /STK=1 /UG=Rn.10853 /LL=84494 /UG_GENE=Trpc4 /DEF=Rattus norvegicus transient receptor potential Trp4alpha mRNA, complete cds. /PROD=transient receptor potential Trp4alpha /FL=gb:AF288407.1 gb:AF421363.1 AF288407 transient receptor potential cation channel, subfamily C, member 4 Trpc4 84494 NM_001083115 /// NM_080396 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0014051 // gamma-aminobutyric acid secretion // inferred from electronic annotation /// 0014051 // gamma-aminobutyric acid secretion // not recorded /// 0051924 // regulation of calcium ion transport // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070509 // calcium ion import // not recorded /// 0070588 // calcium ion transmembrane transport // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0005901 // caveola // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0005911 // cell-cell junction // not recorded /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0030863 // cortical cytoskeleton // not recorded /// 0034704 // calcium channel complex // not recorded /// 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from direct assay /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008013 // beta-catenin binding // not recorded /// 0015279 // store-operated calcium channel activity // inferred from electronic annotation /// 0015279 // store-operated calcium channel activity // not recorded /// 0045296 // cadherin binding // not recorded 1369165_at NM_021771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021771.1 /DB_XREF=gi:11120727 /GEN=Trpc3 /FEA=FLmRNA /CNT=4 /TID=Rn.45385.1 /TIER=FL /STK=2 /UG=Rn.45385 /LL=60395 /DEF=Rattus norvegicus transient receptor protein 3 (Trpc3), mRNA. /PROD=ion channel protein /FL=gb:AB022331.1 gb:NM_021771.1 NM_021771 transient receptor potential cation channel, subfamily C, member 3 Trpc3 60395 NM_021771 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005227 // calcium activated cation channel activity // inferred from direct assay /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369166_at U36476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U36476.1 /DB_XREF=gi:1022783 /FEA=FLmRNA /CNT=4 /TID=Rn.10209.1 /TIER=FL /STK=2 /UG=Rn.10209 /LL=81687 /UG_GENE=Mmp9 /DEF=Rattus norvegicus 92-kDa type IV collagenase mRNA, complete cds. /PROD=92-kDa type IV collagenase /FL=gb:NM_031055.1 gb:U36476.1 gb:U24441.1 U36476 matrix metallopeptidase 9 Mmp9 81687 NM_031055 0001501 // skeletal system development // not recorded /// 0001503 // ossification // inferred from expression pattern /// 0001666 // response to hypoxia // inferred from expression pattern /// 0002687 // positive regulation of leukocyte migration // inferred from direct assay /// 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // inferred from expression pattern /// 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // inferred from sequence or structural similarity /// 0006979 // response to oxidative stress // inferred from direct assay /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0009314 // response to radiation // inferred from expression pattern /// 0009408 // response to heat // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016049 // cell growth // inferred from expression pattern /// 0019087 // transformation of host cell by virus // inferred from direct assay /// 0030198 // extracellular matrix organization // not recorded /// 0030574 // collagen catabolic process // inferred from electronic annotation /// 0030574 // collagen catabolic process // not recorded /// 0031915 // positive regulation of synaptic plasticity // inferred from mutant phenotype /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033189 // response to vitamin A // inferred from expression pattern /// 0034612 // response to tumor necrosis factor // inferred from expression pattern /// 0035094 // response to nicotine // inferred from expression pattern /// 0042493 // response to drug // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0048771 // tissue remodeling // inferred from direct assay /// 0051549 // positive regulation of keratinocyte migration // not recorded /// 0060033 // anatomical structure regression // inferred from expression pattern /// 0071345 // cellular response to cytokine stimulus // inferred from expression pattern /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071404 // cellular response to low-density lipoprotein stimulus // inferred from expression pattern /// 0071460 // cellular response to cell-matrix adhesion // inferred from expression pattern /// 0071460 // cellular response to cell-matrix adhesion // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0001968 // fibronectin binding // inferred from physical interaction /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // not recorded /// 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendopeptidase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008237 // metallopeptidase activity // inferred from direct assay /// 0008237 // metallopeptidase activity // traceable author statement /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1369167_at NM_012750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012750.1 /DB_XREF=gi:6981473 /GEN=Gfra2 /FEA=FLmRNA /CNT=4 /TID=Rn.10775.1 /TIER=FL /STK=2 /UG=Rn.10775 /LL=25136 /DEF=Rattus norvegicus Tyrosine kinase receptor ligand 2 (Gfra2), mRNA. /PROD=tyrosine kinase receptor ligand 2 /FL=gb:NM_012750.1 gb:AF005226.1 gb:U97143.1 NM_012750 GDNF family receptor alpha 2 Gfra2 25136 NM_012750 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0031953 // negative regulation of protein autophosphorylation // inferred from direct assay 0046658 // anchored to plasma membrane // inferred from mutant phenotype 0004872 // receptor activity // inferred from electronic annotation /// 0016167 // glial cell line-derived neurotrophic factor receptor activity // inferred from direct assay 1369168_a_at NM_021856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021856.1 /DB_XREF=gi:11177897 /GEN=Clock /FEA=FLmRNA /CNT=4 /TID=Rn.44290.1 /TIER=FL /STK=2 /UG=Rn.44290 /LL=60447 /DEF=Rattus norvegicus clock gene (Clock), mRNA. /PROD=clock gene /FL=gb:NM_021856.1 gb:AB019258.1 NM_021856 clock homolog (mouse) Clock 60447 NM_021856 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007623 // circadian rhythm // not recorded /// 0007623 // circadian rhythm // non-traceable author statement /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0009649 // entrainment of circadian clock // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048511 // rhythmic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1369169_at NM_017315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017315.1 /DB_XREF=gi:8394380 /GEN=SVCT1 /FEA=FLmRNA /CNT=4 /TID=Rn.12429.1 /TIER=FL /STK=2 /UG=Rn.12429 /LL=50621 /DEF=Rattus norvegicus sodium-coupled ascorbic acid transporter 1 (SVCT1), mRNA. /PROD=sodium-coupled ascorbic acid transporter 1 /FL=gb:AF080452.1 gb:NM_017315.1 NM_017315 solute carrier family 23 (nucleobase transporters), member 1 Slc23a1 50621 NM_017315 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0009636 // response to toxin // not recorded /// 0015882 // L-ascorbic acid transport // inferred from direct assay /// 0015882 // L-ascorbic acid transport // not recorded /// 0015882 // L-ascorbic acid transport // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055085 // transmembrane transport // not recorded /// 0070837 // dehydroascorbic acid transport // not recorded /// 0070904 // transepithelial L-ascorbic acid transport // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // traceable author statement /// 0005903 // brush border // inferred from direct assay /// 0009925 // basal plasma membrane // inferred from direct assay /// 0009925 // basal plasma membrane // not recorded /// 0009925 // basal plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0043229 // intracellular organelle // not recorded 0005215 // transporter activity // inferred from direct assay /// 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008520 // L-ascorbate:sodium symporter activity // inferred from direct assay /// 0008520 // L-ascorbate:sodium symporter activity // not recorded /// 0015081 // sodium ion transmembrane transporter activity // not recorded /// 0015229 // L-ascorbic acid transporter activity // inferred from direct assay /// 0015229 // L-ascorbic acid transporter activity // not recorded /// 0015229 // L-ascorbic acid transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0033300 // dehydroascorbic acid transporter activity // not recorded /// 0070890 // sodium-dependent L-ascorbate transmembrane transporter activity // not recorded 1369170_at NM_133602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133602.1 /DB_XREF=gi:19424311 /GEN=Marta1 /FEA=FLmRNA /CNT=4 /TID=Rn.22398.1 /TIER=FL /STK=2 /UG=Rn.22398 /LL=171137 /DEF=Rattus norvegicus MAP2 RNA trans-acting protein MARTA1 (Marta1), mRNA. /PROD=MAP2 RNA trans-acting protein MARTA1 /FL=gb:NM_133602.1 gb:AF308818.1 NM_133602 KH-type splicing regulatory protein Khsrp 171137 NM_133602 0006350 // transcription // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1369171_at NM_024352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024352.1 /DB_XREF=gi:13242238 /GEN=Mst1 /FEA=FLmRNA /CNT=4 /TID=Rn.10613.1 /TIER=FL /STK=2 /UG=Rn.10613 /LL=24566 /DEF=Rattus norvegicus Macrophage stimulating 1 (hepatocyte growth factor-like) (Mst1), mRNA. /PROD=macrophage stimulating 1 (hepatocyte growthfactor-like) /FL=gb:NM_024352.1 NM_024352 Macrophage stimulating 1 (hepatocyte growth factor-like) Mst1 24566 NM_024352 0006508 // proteolysis // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0007596 // blood coagulation // inferred from electronic annotation /// 0030317 // sperm motility // inferred from expression pattern 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1369172_at NM_030871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030871.1 /DB_XREF=gi:13540702 /GEN=Pde1a /FEA=FLmRNA /CNT=4 /TID=Rn.27298.1 /TIER=FL /STK=2 /UG=Rn.27298 /LL=81529 /DEF=Rattus norvegicus 3-RACE clone 8 phosphodiesterase 1A (Pde1a), mRNA. /PROD=3-RACE clone 8 phosphodiesterase 1A /FL=gb:AF327838.1 gb:NM_030871.1 NM_030871 phosphodiesterase 1A, calmodulin-dependent Pde1a 81529 NM_030871 0006198 // cAMP catabolic process // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0034391 // regulation of smooth muscle cell apoptosis // inferred from mutant phenotype /// 0046069 // cGMP catabolic process // inferred from direct assay /// 0046069 // cGMP catabolic process // inferred from mutant phenotype /// 0048660 // regulation of smooth muscle cell proliferation // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0043025 // neuronal cell body // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030553 // cGMP binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048101 // calcium- and calmodulin-regulated 3',5'-cyclic-GMP phosphodiesterase activity // inferred from direct assay /// 0048101 // calcium- and calmodulin-regulated 3',5'-cyclic-GMP phosphodiesterase activity // inferred from mutant phenotype 1369173_at NM_032060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032060.1 /DB_XREF=gi:14091739 /GEN=C3ar1 /FEA=FLmRNA /CNT=4 /TID=Rn.9772.1 /TIER=FL /STK=2 /UG=Rn.9772 /LL=84007 /DEF=Rattus norvegicus complement component 3a receptor 1 (C3ar1), mRNA. /PROD=complement component 3a receptor 1 /FL=gb:U86379.1 gb:NM_032060.1 NM_032060 complement component 3a receptor 1 C3ar1 84007 NM_032060 0002430 // complement receptor mediated signaling pathway // inferred from mutant phenotype /// 0006935 // chemotaxis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0010575 // positive regulation vascular endothelial growth factor production // inferred from electronic annotation /// 0010575 // positive regulation vascular endothelial growth factor production // not recorded /// 0010759 // positive regulation of macrophage chemotaxis // inferred from electronic annotation /// 0010759 // positive regulation of macrophage chemotaxis // not recorded /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0090023 // positive regulation of neutrophil chemotaxis // inferred from electronic annotation /// 0090023 // positive regulation of neutrophil chemotaxis // not recorded 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001850 // complement component C3a binding // inferred from direct assay /// 0001850 // complement component C3a binding // inferred from mutant phenotype /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // not recorded /// 0004942 // anaphylatoxin receptor activity // inferred from electronic annotation /// 0004943 // C3a anaphylatoxin receptor activity // inferred from direct assay /// 0004943 // C3a anaphylatoxin receptor activity // inferred from mutant phenotype /// 0004943 // C3a anaphylatoxin receptor activity // inferred from physical interaction /// 0004943 // C3a anaphylatoxin receptor activity // inferred from electronic annotation 1369174_at NM_013130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013130.1 /DB_XREF=gi:6981171 /GEN=Madh1 /FEA=FLmRNA /CNT=4 /TID=Rn.10635.1 /TIER=FL /STK=2 /UG=Rn.10635 /LL=25671 /DEF=Rattus norvegicus MAD (mothers against decapentaplegic, Drosophila) homolog 1 (Madh1), mRNA. /PROD=MAD homolog1 (mothers against decapentaplegic,Drosophila) /FL=gb:NM_013130.1 gb:AF067727.1 gb:U66478.1 NM_013130 SMAD family member 1 Smad1 25671 NM_013130 0000165 // MAPKKK cascade // inferred from mutant phenotype /// 0000165 // MAPKKK cascade // not recorded /// 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001710 // mesodermal cell fate commitment // inferred from electronic annotation /// 0001710 // mesodermal cell fate commitment // not recorded /// 0001822 // kidney development // inferred from expression pattern /// 0002051 // osteoblast fate commitment // inferred from electronic annotation /// 0002051 // osteoblast fate commitment // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007183 // SMAD protein complex assembly // inferred from electronic annotation /// 0007183 // SMAD protein complex assembly // not recorded /// 0007276 // gamete generation // inferred from electronic annotation /// 0007276 // gamete generation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009880 // embryonic pattern specification // inferred from sequence or structural similarity /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0030509 // BMP signaling pathway // inferred from mutant phenotype /// 0030509 // BMP signaling pathway // not recorded /// 0030509 // BMP signaling pathway // inferred from sequence or structural similarity /// 0030901 // midbrain development // inferred from electronic annotation /// 0030901 // midbrain development // not recorded /// 0030902 // hindbrain development // inferred from electronic annotation /// 0030902 // hindbrain development // not recorded /// 0042060 // wound healing // inferred from expression pattern /// 0042493 // response to drug // inferred from direct assay /// 0042592 // homeostatic process // inferred from electronic annotation /// 0042592 // homeostatic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // inferred from direct assay /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045768 // positive regulation of anti-apoptosis // inferred from expression pattern /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0050775 // positive regulation of dendrite morphogenesis // inferred from expression pattern /// 0061036 // positive regulation of cartilage development // inferred from electronic annotation /// 0061036 // positive regulation of cartilage development // not recorded /// 0071407 // cellular response to organic cyclic substance // inferred from electronic annotation /// 0071407 // cellular response to organic cyclic substance // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005637 // nuclear inner membrane // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0070410 // co-SMAD binding // inferred from electronic annotation /// 0070410 // co-SMAD binding // not recorded /// 0070411 // I-SMAD binding // inferred from electronic annotation /// 0070411 // I-SMAD binding // not recorded 1369175_a_at NM_012900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012900.1 /DB_XREF=gi:6978494 /GEN=Ambn /FEA=FLmRNA /CNT=4 /TID=Rn.11370.1 /TIER=FL /STK=2 /UG=Rn.11370 /LL=25376 /DEF=Rattus norvegicus Ameloblastin (Ambn), mRNA. /PROD=ameloblastin /FL=gb:U35097.1 gb:NM_012900.1 NM_012900 ameloblastin Ambn 25376 NM_012900 0031214 // biomineral tissue development // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation 0030345 // structural constituent of tooth enamel // traceable author statement /// 0030345 // structural constituent of tooth enamel // inferred from electronic annotation 1369176_at NM_130415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130415.1 /DB_XREF=gi:18426841 /GEN=Lyaat1 /FEA=FLmRNA /CNT=4 /TID=Rn.76305.1 /TIER=FL /STK=2 /UG=Rn.76305 /DEF=Rattus norvegicus ysosomal amino acid transporter 1 (Lyaat1), mRNA. /PROD=ysosomal amino acid transporter 1 /FL=gb:NM_130415.1 gb:AF361239.1 NM_130415 solute carrier family 36 (proton/amino acid symporter), member 1 Slc36a1 155205 NM_130415 0003333 // amino acid transmembrane transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded /// 0006865 // amino acid transport // inferred from electronic annotation /// 0015804 // neutral amino acid transport // inferred from direct assay /// 0015808 // L-alanine transport // not recorded /// 0015808 // L-alanine transport // inferred from electronic annotation /// 0015816 // glycine transport // not recorded /// 0015816 // glycine transport // inferred from electronic annotation /// 0015824 // proline transport // inferred from electronic annotation /// 0015824 // proline transport // not recorded /// 0015992 // proton transport // inferred from direct assay /// 0015992 // proton transport // not recorded /// 0015992 // proton transport // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0035524 // proline transmembrane transport // not recorded 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005280 // hydrogen:amino acid symporter activity // not recorded /// 0005302 // L-tyrosine transmembrane transporter activity // not recorded /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from direct assay /// 0015171 // amino acid transmembrane transporter activity // not recorded /// 0015175 // neutral amino acid transmembrane transporter activity // inferred from direct assay /// 0015175 // neutral amino acid transmembrane transporter activity // non-traceable author statement /// 0015180 // L-alanine transmembrane transporter activity // inferred from electronic annotation /// 0015180 // L-alanine transmembrane transporter activity // not recorded /// 0015187 // glycine transmembrane transporter activity // inferred from electronic annotation /// 0015187 // glycine transmembrane transporter activity // not recorded /// 0015193 // L-proline transmembrane transporter activity // inferred from electronic annotation /// 0015193 // L-proline transmembrane transporter activity // not recorded /// 0015293 // symporter activity // inferred from electronic annotation 1369177_at NM_053735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053735.1 /DB_XREF=gi:16758553 /GEN=Pi4KII /FEA=FLmRNA /CNT=4 /TID=Rn.64407.1 /TIER=FL /STK=2 /UG=Rn.64407 /LL=114554 /DEF=Rattus norvegicus phosphatidylinositol 4-kinase type II (Pi4KII), mRNA. /PROD=phosphatidylinositol 4-kinase type II /FL=gb:AY029199.1 gb:NM_053735.1 NM_053735 phosphatidylinositol 4-kinase type 2 alpha Pi4k2a 114554 NM_053735 0002561 // basophil degranulation // inferred from mutant phenotype /// 0006661 // phosphatidylinositol biosynthetic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from direct assay /// 0031901 // early endosome membrane // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from electronic annotation /// 0070382 // exocytic vesicle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004430 // 1-phosphatidylinositol 4-kinase activity // inferred from direct assay /// 0004430 // 1-phosphatidylinositol 4-kinase activity // not recorded /// 0004430 // 1-phosphatidylinositol 4-kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay 1369178_a_at AF231010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF231010.1 /DB_XREF=gi:8163933 /FEA=FLmRNA /CNT=1 /TID=Rn.9843.2 /TIER=FL /STK=1 /UG=Rn.9843 /LL=25505 /UG_GENE=P2rx1 /DEF=Rattus norvegicus P2X1 receptor isoform mRNA, complete cds, alternatively spliced. /PROD=P2X1 receptor isoform /FL=gb:AF231010.1 AF231010 purinergic receptor P2X, ligand-gated ion channel, 1 P2rx1 25505 NM_001142367 /// NM_012997 0002554 // serotonin secretion by platelet // inferred from electronic annotation /// 0002554 // serotonin secretion by platelet // not recorded /// 0003056 // regulation of vascular smooth muscle contraction // inferred from electronic annotation /// 0003056 // regulation of vascular smooth muscle contraction // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006811 // ion transport // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0006940 // regulation of smooth muscle contraction // not recorded /// 0006940 // regulation of smooth muscle contraction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007320 // insemination // inferred from electronic annotation /// 0007320 // insemination // not recorded /// 0008217 // regulation of blood pressure // inferred from mutant phenotype /// 0010033 // response to organic substance // not recorded /// 0010033 // response to organic substance // inferred from electronic annotation /// 0016265 // death // inferred from electronic annotation /// 0016265 // death // not recorded /// 0019228 // regulation of action potential in neuron // inferred from direct assay /// 0019229 // regulation of vasoconstriction // not recorded /// 0019229 // regulation of vasoconstriction // inferred from electronic annotation /// 0030168 // platelet activation // inferred from electronic annotation /// 0030168 // platelet activation // not recorded /// 0033198 // response to ATP // inferred from electronic annotation /// 0033198 // response to ATP // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0035249 // synaptic transmission, glutamatergic // inferred from mutant phenotype /// 0042310 // vasoconstriction // inferred from mutant phenotype /// 0043270 // positive regulation of ion transport // inferred from electronic annotation /// 0043270 // positive regulation of ion transport // not recorded /// 0046513 // ceramide biosynthetic process // inferred from electronic annotation /// 0046513 // ceramide biosynthetic process // not recorded /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050896 // response to stimulus // not recorded /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051924 // regulation of calcium ion transport // inferred from electronic annotation /// 0051924 // regulation of calcium ion transport // not recorded 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0031240 // external side of cell outer membrane // inferred from electronic annotation /// 0031240 // external side of cell outer membrane // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0045211 // postsynaptic membrane // not recorded 0001614 // purinergic nucleotide receptor activity // inferred from electronic annotation /// 0001614 // purinergic nucleotide receptor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0004931 // extracellular ATP-gated cation channel activity // inferred from direct assay /// 0004931 // extracellular ATP-gated cation channel activity // inferred from mutant phenotype /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // not recorded /// 0005261 // cation channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from direct assay 1369179_a_at NM_013124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013124.1 /DB_XREF=gi:6981385 /GEN=Pparg /FEA=FLmRNA /CNT=4 /TID=Rn.23443.1 /TIER=FL /STK=2 /UG=Rn.23443 /LL=25664 /DEF=Rattus norvegicus Peroxisome proliferator activator receptor, gamma (Pparg), mRNA. /PROD=peroxisome proliferator activator receptor,gamma /FL=gb:AF156666.1 gb:NM_013124.1 gb:AB019561.1 NM_013124 peroxisome proliferator-activated receptor gamma Pparg 25664 NM_001145366 /// NM_001145367 /// NM_013124 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001818 // negative regulation of cytokine production // inferred from electronic annotation /// 0001818 // negative regulation of cytokine production // not recorded /// 0001890 // placenta development // inferred from electronic annotation /// 0001890 // placenta development // not recorded /// 0002674 // negative regulation of acute inflammatory response // inferred from mutant phenotype /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from expression pattern /// 0006631 // fatty acid metabolic process // traceable author statement /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007507 // heart development // inferred from expression pattern /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008217 // regulation of blood pressure // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009409 // response to cold // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from direct assay /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010745 // negative regulation of macrophage derived foam cell differentiation // not recorded /// 0010871 // negative regulation of receptor biosynthetic process // inferred from electronic annotation /// 0010871 // negative regulation of receptor biosynthetic process // not recorded /// 0010887 // negative regulation of cholesterol storage // inferred from electronic annotation /// 0010887 // negative regulation of cholesterol storage // not recorded /// 0010891 // negative regulation of sequestering of triglyceride // inferred from electronic annotation /// 0010891 // negative regulation of sequestering of triglyceride // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0015909 // long-chain fatty acid transport // inferred from electronic annotation /// 0015909 // long-chain fatty acid transport // not recorded /// 0019216 // regulation of lipid metabolic process // inferred from mutant phenotype /// 0019395 // fatty acid oxidation // inferred from mutant phenotype /// 0030224 // monocyte differentiation // inferred from electronic annotation /// 0030224 // monocyte differentiation // not recorded /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0031000 // response to caffeine // inferred from expression pattern /// 0031100 // organ regeneration // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // not recorded /// 0033189 // response to vitamin A // inferred from expression pattern /// 0033993 // response to lipid // inferred from electronic annotation /// 0033993 // response to lipid // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042593 // glucose homeostasis // not recorded /// 0042953 // lipoprotein transport // inferred from electronic annotation /// 0042953 // lipoprotein transport // not recorded /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045165 // cell fate commitment // not recorded /// 0045444 // fat cell differentiation // not recorded /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045598 // regulation of fat cell differentiation // inferred from direct assay /// 0045598 // regulation of fat cell differentiation // not recorded /// 0045598 // regulation of fat cell differentiation // inferred from electronic annotation /// 0045600 // positive regulation of fat cell differentiation // not recorded /// 0045600 // positive regulation of fat cell differentiation // inferred from sequence or structural similarity /// 0045600 // positive regulation of fat cell differentiation // inferred from electronic annotation /// 0045713 // low-density lipoprotein receptor biosynthetic process // inferred from electronic annotation /// 0045713 // low-density lipoprotein receptor biosynthetic process // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046321 // positive regulation of fatty acid oxidation // inferred from mutant phenotype /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded /// 0048714 // positive regulation of oligodendrocyte differentiation // inferred from mutant phenotype /// 0050872 // white fat cell differentiation // not recorded /// 0050872 // white fat cell differentiation // inferred from sequence or structural similarity /// 0050872 // white fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded /// 0051091 // positive regulation of transcription factor activity // inferred from electronic annotation /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0051974 // negative regulation of telomerase activity // inferred from mutant phenotype /// 0055098 // response to low-density lipoprotein stimulus // inferred from electronic annotation /// 0055098 // response to low-density lipoprotein stimulus // not recorded /// 0071285 // cellular response to lithium ion // not recorded /// 0071407 // cellular response to organic cyclic substance // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // not recorded /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from electronic annotation /// 0008144 // drug binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from direct assay /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // not recorded /// 0033613 // transcription activator binding // inferred from electronic annotation /// 0033613 // transcription activator binding // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // not recorded /// 0050544 // arachidonic acid binding // inferred from electronic annotation /// 0050544 // arachidonic acid binding // not recorded 1369180_at NM_031535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031535.1 /DB_XREF=gi:13928721 /GEN=Bcl2l /FEA=FLmRNA /CNT=4 /TID=Rn.10323.1 /TIER=FL /STK=2 /UG=Rn.10323 /LL=24888 /DEF=Rattus norvegicus B cell lymphoma 2 like (Bcl2l), mRNA. /PROD=B cell lymphoma 2 like /FL=gb:U72349.1 gb:NM_031535.1 NM_031535 Bcl2-like 1 Bcl2l1 24888 NM_001033670 /// NM_001033671 /// NM_001033672 /// NM_031535 0001541 // ovarian follicle development // inferred from mutant phenotype /// 0001541 // ovarian follicle development // not recorded /// 0001541 // ovarian follicle development // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // not recorded /// 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0006915 // apoptosis // inferred from expression pattern /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from direct assay /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006950 // response to stress // inferred from expression pattern /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0007281 // germ cell development // not recorded /// 0007281 // germ cell development // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0008584 // male gonad development // inferred from electronic annotation /// 0009314 // response to radiation // not recorded /// 0009314 // response to radiation // inferred from electronic annotation /// 0009566 // fertilization // not recorded /// 0009566 // fertilization // inferred from electronic annotation /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010288 // response to lead ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0034097 // response to cytokine stimulus // not recorded /// 0034097 // response to cytokine stimulus // inferred from electronic annotation /// 0040007 // growth // not recorded /// 0040007 // growth // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0042981 // regulation of apoptosis // inferred from direct assay /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0045768 // positive regulation of anti-apoptosis // not recorded /// 0045768 // positive regulation of anti-apoptosis // inferred from electronic annotation /// 0046898 // response to cycloheximide // not recorded /// 0046898 // response to cycloheximide // inferred from electronic annotation /// 0046902 // regulation of mitochondrial membrane permeability // not recorded /// 0046902 // regulation of mitochondrial membrane permeability // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051881 // regulation of mitochondrial membrane potential // not recorded /// 0051881 // regulation of mitochondrial membrane potential // inferred from electronic annotation 0000299 // integral to membrane of membrane fraction // traceable author statement /// 0005622 // intracellular // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005740 // mitochondrial envelope // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005741 // mitochondrial outer membrane // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // not recorded /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0044429 // mitochondrial part // not recorded /// 0044429 // mitochondrial part // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0043027 // caspase inhibitor activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0051400 // BH domain binding // inferred from physical interaction /// 0070215 // MDM2 binding // inferred from physical interaction 1369181_at NM_023965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023965.1 /DB_XREF=gi:13027415 /GEN=Cybb /FEA=FLmRNA /CNT=4 /TID=Rn.64497.1 /TIER=FL /STK=2 /UG=Rn.64497 /LL=66021 /DEF=Rattus norvegicus endothelial type gp91-phox gene (Cybb), mRNA. /PROD=endothelial type gp91-phox gene /FL=gb:AF298656.3 gb:NM_023965.1 NM_023965 cytochrome b-245, beta polypeptide Cybb 66021 NM_023965 0006801 // superoxide metabolic process // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0042493 // response to drug // inferred from direct assay /// 0042554 // superoxide anion generation // not recorded /// 0045087 // innate immune response // not recorded /// 0045730 // respiratory burst // not recorded /// 0050665 // hydrogen peroxide biosynthetic process // not recorded /// 0055114 // oxidation reduction // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005622 // intracellular // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043020 // NADPH oxidase complex // inferred from direct assay /// 0043020 // NADPH oxidase complex // not recorded /// 0043025 // neuronal cell body // inferred from direct assay 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0009055 // electron carrier activity // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016174 // NAD(P)H oxidase activity // traceable author statement /// 0016175 // superoxide-generating NADPH oxidase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // not recorded /// 0046982 // protein heterodimerization activity // not recorded /// 0050660 // FAD or FADH2 binding // not recorded /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1369182_at NM_013057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013057.1 /DB_XREF=gi:6978822 /GEN=F3 /FEA=FLmRNA /CNT=4 /TID=Rn.9980.1 /TIER=FL /STK=2 /UG=Rn.9980 /LL=25584 /DEF=Rattus norvegicus Coagulation factor III (thromboplastin, tissue factor) (F3), mRNA. /PROD=coagulation factor III (thromboplastin, tissuefactor) /FL=gb:U07619.1 gb:NM_013057.1 NM_013057 coagulation factor III (thromboplastin, tissue factor) F3 25584 NM_013057 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0002541 // activation of plasma proteins involved in acute inflammatory response // inferred from electronic annotation /// 0002541 // activation of plasma proteins involved in acute inflammatory response // not recorded /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0007568 // aging // inferred from expression pattern /// 0007596 // blood coagulation // inferred from electronic annotation /// 0007598 // blood coagulation, extrinsic pathway // not recorded /// 0009266 // response to temperature stimulus // inferred from expression pattern /// 0009611 // response to wounding // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0010641 // positive regulation of platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0010641 // positive regulation of platelet-derived growth factor receptor signaling pathway // not recorded /// 0014911 // positive regulation of smooth muscle cell migration // inferred from direct assay /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0034405 // response to fluid shear stress // inferred from expression pattern /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0051897 // positive regulation of protein kinase B signaling cascade // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded /// 0055098 // response to low-density lipoprotein stimulus // inferred from expression pattern /// 0070301 // cellular response to hydrogen peroxide // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0002020 // protease binding // inferred from physical interaction /// 0002020 // protease binding // not recorded /// 0002020 // protease binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005543 // phospholipid binding // not recorded /// 0043498 // cell surface binding // inferred from electronic annotation /// 0043498 // cell surface binding // not recorded 1369183_at NM_019231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019231.1 /DB_XREF=gi:9506990 /GEN=Prkm13 /FEA=FLmRNA /CNT=4 /TID=Rn.48658.1 /TIER=FL /STK=2 /UG=Rn.48658 /LL=29513 /DEF=Rattus norvegicus mitogen activated protein kinase 13 (Prkm13), mRNA. /PROD=mitogen activated protein kinase 13 /FL=gb:NM_019231.1 gb:AF092534.1 NM_019231 mitogen activated protein kinase 13 Mapk13 29513 NM_019231 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006950 // response to stress // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from sequence or structural similarity /// 0007265 // Ras protein signal transduction // not recorded 0005625 // soluble fraction // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004707 // MAP kinase activity // inferred from direct assay /// 0004707 // MAP kinase activity // not recorded /// 0004707 // MAP kinase activity // inferred from sequence or structural similarity /// 0004707 // MAP kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1369184_at NM_131905 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_131905.1 /DB_XREF=gi:18777750 /GEN=Cldn16 /FEA=FLmRNA /CNT=4 /TID=Rn.43852.1 /TIER=FL /STK=2 /UG=Rn.43852 /LL=155268 /DEF=Rattus norvegicus claudin 16 (Cldn16), mRNA. /PROD=claudin 16 /FL=gb:NM_131905.1 gb:AF333099.1 NM_131905 claudin 16 Cldn16 155268 NM_131905 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0016338 // calcium-independent cell-cell adhesion // inferred from sequence or structural similarity 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from direct assay /// 0005923 // tight junction // inferred from sequence or structural similarity /// 0005923 // tight junction // traceable author statement /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from sequence or structural similarity 1369185_a_at AF336852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF336852.1 /DB_XREF=gi:12667441 /GEN=SytVII /FEA=FLmRNA /CNT=11 /TID=Rn.41132.2 /TIER=FL /STK=1 /UG=Rn.41132 /LL=59267 /DEF=Rattus norvegicus synaptotagmin VIIT1 (SytVII) mRNA, complete cds, alternatively spliced. /PROD=synaptotagmin VIIT1 /FL=gb:AF336852.1 AF336852 synaptotagmin VII Syt7 59267 NM_021659 0001778 // plasma membrane repair // inferred from electronic annotation /// 0001778 // plasma membrane repair // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0017158 // regulation of calcium ion-dependent exocytosis // inferred from mutant phenotype /// 0050796 // regulation of insulin secretion // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from mutant phenotype 1369186_at D85899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D85899.1 /DB_XREF=gi:15620783 /GEN=ICE /FEA=FLmRNA /CNT=4 /TID=Rn.37508.1 /TIER=FL /STK=2 /UG=Rn.37508 /LL=25166 /DEF=Rattus norvegicus ICE mRNA for caspase-1, complete cds. /PROD=caspase-1 /FL=gb:D85899.1 gb:U14647.1 gb:NM_012762.1 D85899 caspase 1 Casp1 25166 NM_012762 0001666 // response to hypoxia // inferred from direct assay /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001774 // microglial cell activation // inferred from mutant phenotype /// 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0006915 // apoptosis // inferred from expression pattern /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0007520 // myoblast fusion // inferred from mutant phenotype /// 0007613 // memory // inferred from mutant phenotype /// 0008219 // cell death // inferred from electronic annotation /// 0008219 // cell death // not recorded /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0016485 // protein processing // inferred from electronic annotation /// 0016485 // protein processing // not recorded /// 0032496 // response to lipopolysaccharide // inferred from mutant phenotype /// 0033198 // response to ATP // inferred from electronic annotation /// 0033198 // response to ATP // not recorded /// 0042221 // response to chemical stimulus // not recorded /// 0042221 // response to chemical stimulus // inferred from electronic annotation /// 0042493 // response to drug // inferred from direct assay /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0046010 // positive regulation of circadian sleep/wake cycle, non-REM sleep // inferred from mutant phenotype /// 0050715 // positive regulation of cytokine secretion // inferred from mutant phenotype /// 0050715 // positive regulation of cytokine secretion // not recorded /// 0050715 // positive regulation of cytokine secretion // inferred from electronic annotation /// 0050717 // positive regulation of interleukin-1 alpha secretion // inferred from electronic annotation /// 0050717 // positive regulation of interleukin-1 alpha secretion // not recorded /// 0050718 // positive regulation of interleukin-1 beta secretion // inferred from mutant phenotype /// 0050718 // positive regulation of interleukin-1 beta secretion // not recorded /// 0050718 // positive regulation of interleukin-1 beta secretion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1369187_a_at NM_012704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012704.1 /DB_XREF=gi:6981433 /GEN=Ptger3 /FEA=FLmRNA /CNT=4 /TID=Rn.10361.1 /TIER=FL /STK=2 /UG=Rn.10361 /LL=24929 /DEF=Rattus norvegicus Rat kidney prostaglandin EP3 receptor (Ptger3), mRNA. /PROD=rat kidney prostaglandin EP3 receptor(alternative splicing results in two different receptorsEP3a and EP3b) /FL=gb:NM_012704.1 gb:D29969.1 NM_012704 prostaglandin E receptor 3 (subtype EP3) Ptger3 24929 NM_012704 0001660 // fever // inferred from electronic annotation /// 0001660 // fever // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from electronic annotation /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // not recorded /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0015701 // bicarbonate transport // inferred from electronic annotation /// 0015701 // bicarbonate transport // not recorded /// 0030146 // diuresis // inferred from electronic annotation /// 0030146 // diuresis // not recorded /// 0031622 // positive regulation of fever // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004955 // prostaglandin receptor activity // inferred from electronic annotation /// 0004957 // prostaglandin E receptor activity // inferred from electronic annotation /// 0004957 // prostaglandin E receptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369188_at NM_133521 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133521.1 /DB_XREF=gi:19424165 /GEN=Fbxo32 /FEA=FLmRNA /CNT=4 /TID=Rn.72619.1 /TIER=FL /STK=2 /UG=Rn.72619 /DEF=Rattus norvegicus f-box only protein 32 (Fbxo32), mRNA. /PROD=f-box only protein 32 /FL=gb:NM_133521.1 gb:AY059628.1 NM_133521 F-box protein 32 Fbxo32 171043 NM_133521 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0014889 // muscle atrophy // inferred from direct assay 0004842 // ubiquitin-protein ligase activity // traceable author statement 1369189_at NM_031581 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031581.1 /DB_XREF=gi:13928787 /GEN=Ppyr1 /FEA=FLmRNA /CNT=4 /TID=Rn.10574.1 /TIER=FL /STK=2 /UG=Rn.10574 /LL=29471 /DEF=Rattus norvegicus pancreatic polypeptide receptor 1 (Ppyr1), mRNA. /PROD=pancreatic polypeptide receptor 1 /FL=gb:U42388.1 gb:NM_031581.1 NM_031581 pancreatic polypeptide receptor 1 Ppyr1 29471 NM_031581 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007268 // synaptic transmission // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001601 // peptide YY receptor activity // inferred from electronic annotation /// 0001601 // peptide YY receptor activity // not recorded /// 0001602 // pancreatic polypeptide receptor activity // inferred from direct assay /// 0001602 // pancreatic polypeptide receptor activity // not recorded /// 0001602 // pancreatic polypeptide receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004983 // neuropeptide Y receptor activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from mutant phenotype 1369190_at NM_012830 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012830.1 /DB_XREF=gi:6978626 /GEN=Cd2 /FEA=FLmRNA /CNT=4 /TID=Rn.10328.1 /TIER=FL /STK=2 /UG=Rn.10328 /LL=25299 /DEF=Rattus norvegicus OX-45 surface antigen, homolog to human T lymphocyte CD2 antigen (Cd2), mRNA. /PROD=OX-45 surface antigen, homolog to human Tlymphocyte CD2 antigen /FL=gb:NM_012830.1 NM_012830 Cd2 molecule Cd2 497761 NM_012830 0007155 // cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // inferred from mutant phenotype /// 0042110 // T cell activation // inferred from mutant phenotype /// 0042110 // T cell activation // traceable author statement 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from mutant phenotype /// 0009897 // external side of plasma membrane // not recorded /// 0009898 // internal side of plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0044214 // fully spanning the plasma membrane // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0046658 // anchored to plasma membrane // not recorded 0001948 // glycoprotein binding // inferred from physical interaction /// 0003823 // antigen binding // inferred from mutant phenotype /// 0003823 // antigen binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0030971 // receptor tyrosine kinase binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0043499 // eukaryotic cell surface binding // not recorded /// 0043621 // protein self-association // inferred from direct assay 1369191_at NM_012589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012589.1 /DB_XREF=gi:7549768 /GEN=Il6 /FEA=FLmRNA /CNT=4 /TID=Rn.9873.1 /TIER=FL /STK=2 /UG=Rn.9873 /LL=24498 /DEF=Rattus norvegicus Interleukin 6 (interferon, beta 2) (Il6), mRNA. /PROD=interleukin 6 (interferon, beta 2) /FL=gb:M26744.1 gb:NM_012589.1 NM_012589 interleukin 6 Il6 24498 NM_012589 0001781 // neutrophil apoptosis // inferred from electronic annotation /// 0001781 // neutrophil apoptosis // not recorded /// 0001878 // response to yeast // inferred from expression pattern /// 0002384 // hepatic immune response // not recorded /// 0002675 // positive regulation of acute inflammatory response // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from direct assay /// 0006953 // acute-phase response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008360 // regulation of cell shape // inferred from direct assay /// 0009408 // response to heat // inferred from expression pattern /// 0009409 // response to cold // inferred from expression pattern /// 0009611 // response to wounding // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009617 // response to bacterium // inferred from expression pattern /// 0010574 // regulation of vascular endothelial growth factor production // not recorded /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0031000 // response to caffeine // inferred from expression pattern /// 0031018 // endocrine pancreas development // inferred from electronic annotation /// 0031018 // endocrine pancreas development // not recorded /// 0031175 // neuron projection development // not recorded /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032494 // response to peptidoglycan // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032722 // positive regulation of chemokine production // not recorded /// 0032755 // positive regulation of interleukin-6 production // not recorded /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0032966 // negative regulation of collagen biosynthetic process // not recorded /// 0033138 // positive regulation of peptidyl-serine phosphorylation // not recorded /// 0033160 // positive regulation of protein import into nucleus, translocation // inferred from direct assay /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // not recorded /// 0042832 // defense response to protozoan // inferred from electronic annotation /// 0042832 // defense response to protozoan // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043154 // negative regulation of caspase activity // inferred from direct assay /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0043526 // neuroprotection // inferred from direct assay /// 0045079 // negative regulation of chemokine biosynthetic process // inferred from electronic annotation /// 0045079 // negative regulation of chemokine biosynthetic process // not recorded /// 0045188 // regulation of circadian sleep/wake cycle, non-REM sleep // inferred from mutant phenotype /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from direct assay /// 0045454 // cell redox homeostasis // inferred from mutant phenotype /// 0045630 // positive regulation of T-helper 2 cell differentiation // inferred from electronic annotation /// 0045630 // positive regulation of T-helper 2 cell differentiation // not recorded /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0045721 // negative regulation of gluconeogenesis // inferred from direct assay /// 0045727 // positive regulation of translation // not recorded /// 0045740 // positive regulation of DNA replication // inferred from mutant phenotype /// 0045768 // positive regulation of anti-apoptosis // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046427 // positive regulation of JAK-STAT cascade // inferred from direct assay /// 0046427 // positive regulation of JAK-STAT cascade // not recorded /// 0046677 // response to antibiotic // inferred from expression pattern /// 0046716 // muscle cell homeostasis // inferred from electronic annotation /// 0046716 // muscle cell homeostasis // not recorded /// 0046849 // bone remodeling // inferred from expression pattern /// 0046888 // negative regulation of hormone secretion // inferred from electronic annotation /// 0046888 // negative regulation of hormone secretion // not recorded /// 0048635 // negative regulation of muscle organ development // inferred from direct assay /// 0048661 // positive regulation of smooth muscle cell proliferation // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0050710 // negative regulation of cytokine secretion // inferred from direct assay /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050829 // defense response to Gram-negative bacterium // not recorded /// 0050830 // defense response to Gram-positive bacterium // not recorded /// 0050871 // positive regulation of B cell activation // not recorded /// 0051024 // positive regulation of immunoglobulin secretion // not recorded /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051384 // response to glucocorticoid stimulus // not recorded /// 0051592 // response to calcium ion // inferred from expression pattern /// 0051602 // response to electrical stimulus // inferred from expression pattern /// 0051607 // defense response to virus // not recorded /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0051971 // positive regulation of transmission of nerve impulse // inferred from direct assay /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // not recorded /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // not recorded /// 0070091 // glucagon secretion // inferred from electronic annotation /// 0070091 // glucagon secretion // not recorded /// 0070102 // interleukin-6-mediated signaling pathway // inferred from electronic annotation /// 0070102 // interleukin-6-mediated signaling pathway // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005896 // interleukin-6 receptor complex // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded 0005102 // receptor binding // inferred from direct assay /// 0005125 // cytokine activity // inferred from direct assay /// 0005125 // cytokine activity // not recorded /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005138 // interleukin-6 receptor binding // inferred from direct assay /// 0005138 // interleukin-6 receptor binding // not recorded /// 0005138 // interleukin-6 receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded 1369192_at NM_031762 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031762.1 /DB_XREF=gi:13929075 /GEN=Cdkn1b /FEA=FLmRNA /CNT=4 /TID=Rn.10786.1 /TIER=FL /STK=2 /UG=Rn.10786 /LL=83571 /DEF=Rattus norvegicus Cyclin-dependent kinase inhibitor 1B, (p27, Kip1) (Cdkn1b), mRNA. /PROD=cyclin-dependent kinase inhibitor 1B (p27,kip1) /FL=gb:D83792.1 gb:NM_031762.1 gb:D86924.1 gb:AF015194.1 NM_031762 cyclin-dependent kinase inhibitor 1B Cdkn1b 83571 NM_031762 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0006813 // potassium ion transport // not recorded /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006950 // response to stress // inferred from expression pattern /// 0007050 // cell cycle arrest // not recorded /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0008219 // cell death // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030308 // negative regulation of cell growth // not recorded /// 0031116 // positive regulation of microtubule polymerization // not recorded /// 0031116 // positive regulation of microtubule polymerization // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0033673 // negative regulation of kinase activity // not recorded /// 0042326 // negative regulation of phosphorylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // not recorded /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0048102 // autophagic cell death // not recorded /// 0048839 // inner ear development // not recorded /// 0048839 // inner ear development // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0051271 // negative regulation of cellular component movement // not recorded /// 0051271 // negative regulation of cellular component movement // inferred from electronic annotation /// 0060770 // negative regulation of epithelial cell proliferation involved in prostate gland development // not recorded /// 0060770 // negative regulation of epithelial cell proliferation involved in prostate gland development // inferred from electronic annotation /// 0071236 // cellular response to antibiotic // not recorded /// 0071285 // cellular response to lithium ion // not recorded /// 0071407 // cellular response to organic cyclic substance // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0004861 // cyclin-dependent protein kinase inhibitor activity // not recorded /// 0004861 // cyclin-dependent protein kinase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction /// 0051087 // chaperone binding // inferred from physical interaction 1369193_at AF474979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF474979.1 /DB_XREF=gi:18644709 /GEN=Cdkn2b /FEA=FLmRNA /CNT=4 /TID=Rn.55525.1 /TIER=FL /STK=2 /UG=Rn.55525 /DEF=Rattus norvegicus strain COP cyclin-dependent kinase inhibitor 2b (Cdkn2b) mRNA, complete cds. /PROD=cyclin-dependent kinase inhibitor 2b /FL=gb:AF474978.1 gb:NM_130812.1 gb:AF474979.1 AF474979 cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4) Cdkn2b 25164 NM_130812 0000079 // regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0000079 // regulation of cyclin-dependent protein kinase activity // not recorded /// 0000086 // G2/M transition of mitotic cell cycle // inferred from electronic annotation /// 0000086 // G2/M transition of mitotic cell cycle // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030219 // megakaryocyte differentiation // inferred from electronic annotation /// 0030219 // megakaryocyte differentiation // not recorded /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0030858 // positive regulation of epithelial cell differentiation // inferred from expression pattern /// 0031575 // mitotic cell cycle G1/S transition checkpoint // inferred from electronic annotation /// 0031575 // mitotic cell cycle G1/S transition checkpoint // not recorded /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0031668 // cellular response to extracellular stimulus // not recorded /// 0031670 // cellular response to nutrient // inferred from electronic annotation /// 0031670 // cellular response to nutrient // not recorded /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042326 // negative regulation of phosphorylation // inferred from electronic annotation /// 0042326 // negative regulation of phosphorylation // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004861 // cyclin-dependent protein kinase inhibitor activity // inferred from electronic annotation /// 0004861 // cyclin-dependent protein kinase inhibitor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded 1369194_a_at AF474976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF474976.1 /DB_XREF=gi:18644703 /GEN=Cdkn2a /FEA=FLmRNA /CNT=4 /TID=Rn.48717.1 /TIER=FL /STK=2 /UG=Rn.48717 /LL=25163 /DEF=Rattus norvegicus strain ACISegHsd cyclin-dependent kinase inhibitor 2a p16Ink4a (Cdkn2a) mRNA, complete cds. /PROD=cyclin-dependent kinase inhibitor 2a p16Ink4a /FL=gb:L81167.1 gb:AF474977.1 gb:AF474976.1 gb:NM_031550.1 AF474976 cyclin-dependent kinase inhibitor 2A Cdkn2a 25163 NM_031550 0006350 // transcription // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0042493 // response to drug // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0004861 // cyclin-dependent protein kinase inhibitor activity // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation 1369195_at NM_013068 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013068.1 /DB_XREF=gi:6978826 /GEN=Fabp2 /FEA=FLmRNA /CNT=4 /TID=Rn.10921.1 /TIER=FL /STK=2 /UG=Rn.10921 /LL=25598 /DEF=Rattus norvegicus Fatty acid binding protein 2 (Fabp2), mRNA. /PROD=fatty acid binding protein 2 /FL=gb:NM_013068.1 gb:M35992.1 NM_013068 fatty acid binding protein 2, intestinal Fabp2 25598 NM_013068 0006631 // fatty acid metabolic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0015908 // fatty acid transport // inferred from expression pattern /// 0015909 // long-chain fatty acid transport // inferred from direct assay /// 0050892 // intestinal absorption // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005902 // microvillus // inferred from direct assay /// 0044424 // intracellular part // not recorded /// 0044424 // intracellular part // inferred from electronic annotation /// 0045179 // apical cortex // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0005324 // long-chain fatty acid transporter activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005504 // fatty acid binding // inferred from direct assay /// 0005504 // fatty acid binding // inferred from physical interaction /// 0005504 // fatty acid binding // traceable author statement /// 0008289 // lipid binding // inferred from electronic annotation 1369196_at NM_012626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012626.1 /DB_XREF=gi:6981389 /GEN=Ppy /FEA=FLmRNA /CNT=4 /TID=Rn.9755.1 /TIER=FL /STK=2 /UG=Rn.9755 /LL=24677 /DEF=Rattus norvegicus Pancreatic polypeptide (Ppy), mRNA. /PROD=pancreatic polypeptide /FL=gb:NM_012626.1 gb:M13588.1 NM_012626 pancreatic polypeptide Ppy 24677 NM_012626 0005576 // extracellular region // inferred from electronic annotation 0001664 // G-protein-coupled receptor binding // inferred from electronic annotation /// 0001664 // G-protein-coupled receptor binding // not recorded /// 0005179 // hormone activity // inferred from electronic annotation 1369197_at NM_023979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023979.1 /DB_XREF=gi:13027435 /GEN=Apaf1 /FEA=FLmRNA /CNT=4 /TID=Rn.64522.1 /TIER=FL /STK=2 /UG=Rn.64522 /LL=78963 /DEF=Rattus norvegicus apoptotic protease activating factor 1 (Apaf1), mRNA. /PROD=apoptotic protease activating factor 1 /FL=gb:AF218388.1 gb:NM_023979.1 gb:AF320222.1 NM_023979 apoptotic peptidase activating factor 1 Apaf1 78963 NM_023979 0001666 // response to hypoxia // inferred from expression pattern /// 0001843 // neural tube closure // not recorded /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from direct assay /// 0006919 // activation of caspase activity // not recorded /// 0006952 // defense response // inferred from electronic annotation /// 0007275 // multicellular organismal development // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0007420 // brain development // not recorded /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008635 // activation of caspase activity by cytochrome c // not recorded /// 0010659 // cardiac muscle cell apoptosis // inferred from mutant phenotype /// 0010952 // positive regulation of peptidase activity // not recorded /// 0030154 // cell differentiation // inferred from expression pattern /// 0030900 // forebrain development // not recorded /// 0034349 // glial cell apoptosis // inferred from expression pattern /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051402 // neuron apoptosis // not recorded /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0043293 // apoptosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016505 // apoptotic protease activator activity // not recorded /// 0042802 // identical protein binding // inferred from direct assay /// 0042802 // identical protein binding // not recorded 1369198_at AF218388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF218388.1 /DB_XREF=gi:17224296 /FEA=FLmRNA /CNT=4 /TID=Rn.64522.1 /TIER=FL /STK=1 /UG=Rn.64522 /LL=78963 /UG_GENE=Apaf1 /DEF=Rattus norvegicus apoptotic protease activating factor-1 mRNA, complete cds. /PROD=apoptotic protease activating factor-1 /FL=gb:AF218388.1 gb:NM_023979.1 gb:AF320222.1 AF218388 apoptotic peptidase activating factor 1 Apaf1 78963 NM_023979 0001666 // response to hypoxia // inferred from expression pattern /// 0001843 // neural tube closure // not recorded /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from direct assay /// 0006919 // activation of caspase activity // not recorded /// 0006952 // defense response // inferred from electronic annotation /// 0007275 // multicellular organismal development // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0007420 // brain development // not recorded /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008635 // activation of caspase activity by cytochrome c // not recorded /// 0010659 // cardiac muscle cell apoptosis // inferred from mutant phenotype /// 0010952 // positive regulation of peptidase activity // not recorded /// 0030154 // cell differentiation // inferred from expression pattern /// 0030900 // forebrain development // not recorded /// 0034349 // glial cell apoptosis // inferred from expression pattern /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051402 // neuron apoptosis // not recorded /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0043293 // apoptosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016505 // apoptotic protease activator activity // not recorded /// 0042802 // identical protein binding // inferred from direct assay /// 0042802 // identical protein binding // not recorded 1369199_at M31477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M31477.1 /DB_XREF=gi:1196818 /FEA=FLmRNA /CNT=4 /TID=Rn.9934.1 /TIER=FL /STK=1 /UG=Rn.9934 /LL=24807 /UG_GENE=Tacr1 /DEF=Rattus norvegicus substance P receptor mRNA, complete cds. /PROD=substance P receptor /FL=gb:M31477.1 gb:NM_012667.1 gb:J05097.1 M31477 tachykinin receptor 1 Tacr1 24807 NM_012667 0002118 // aggressive behavior // inferred from mutant phenotype /// 0002526 // acute inflammatory response // inferred from expression pattern /// 0003079 // positive regulation of natriuresis // inferred from mutant phenotype /// 0006950 // response to stress // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0007217 // tachykinin receptor signaling pathway // not recorded /// 0007217 // tachykinin receptor signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // traceable author statement /// 0007616 // long-term memory // inferred from mutant phenotype /// 0008217 // regulation of blood pressure // inferred from mutant phenotype /// 0008306 // associative learning // inferred from mutant phenotype /// 0009408 // response to heat // inferred from mutant phenotype /// 0009725 // response to hormone stimulus // inferred from mutant phenotype /// 0010193 // response to ozone // inferred from mutant phenotype /// 0010634 // positive regulation of epithelial cell migration // inferred from mutant phenotype /// 0010996 // response to auditory stimulus // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0019233 // sensory perception of pain // inferred from mutant phenotype /// 0019233 // sensory perception of pain // traceable author statement /// 0032224 // positive regulation of synaptic transmission, cholinergic // inferred from mutant phenotype /// 0032230 // positive regulation of synaptic transmission, GABAergic // inferred from mutant phenotype /// 0035094 // response to nicotine // inferred from mutant phenotype /// 0035106 // operant conditioning // inferred from mutant phenotype /// 0042713 // sperm ejaculation // inferred from mutant phenotype /// 0042755 // eating behavior // inferred from mutant phenotype /// 0043278 // response to morphine // inferred from expression pattern /// 0045471 // response to ethanol // inferred from mutant phenotype /// 0045760 // positive regulation of action potential // inferred from mutant phenotype /// 0045777 // positive regulation of blood pressure // inferred from mutant phenotype /// 0045778 // positive regulation of ossification // inferred from mutant phenotype /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype /// 0048265 // response to pain // not recorded /// 0048265 // response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // inferred from mutant phenotype /// 0050671 // positive regulation of lymphocyte proliferation // inferred from mutant phenotype /// 0050679 // positive regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0051496 // positive regulation of stress fiber assembly // inferred from mutant phenotype /// 0060083 // smooth muscle contraction involved in micturition // inferred from mutant phenotype /// 0070474 // positive regulation of uterine smooth muscle contraction // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004995 // tachykinin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016496 // substance P receptor activity // inferred from direct assay 1369200_at NM_021576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021576.1 /DB_XREF=gi:11024642 /GEN=Nt5 /FEA=FLmRNA /CNT=4 /TID=Rn.40132.1 /TIER=FL /STK=2 /UG=Rn.40132 /LL=58813 /DEF=Rattus norvegicus 5 nucleotidase (Nt5), mRNA. /PROD=5 nucleotidase /FL=gb:NM_021576.1 gb:J05214.1 NM_021576 5' nucleotidase, ecto Nt5e 58813 NM_021576 0006164 // purine nucleotide biosynthetic process // inferred from mutant phenotype /// 0006196 // AMP catabolic process // inferred from electronic annotation /// 0006196 // AMP catabolic process // not recorded /// 0009166 // nucleotide catabolic process // inferred from electronic annotation /// 0016311 // dephosphorylation // not recorded /// 0046085 // adenosine metabolic process // inferred from direct assay /// 0046086 // adenosine biosynthetic process // inferred from electronic annotation /// 0046086 // adenosine biosynthetic process // not recorded /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0031225 // anchored to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0008198 // ferrous iron binding // inferred from direct assay /// 0008253 // 5'-nucleotidase activity // inferred from direct assay /// 0008253 // 5'-nucleotidase activity // inferred from mutant phenotype /// 0008253 // 5'-nucleotidase activity // not recorded /// 0008253 // 5'-nucleotidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369201_at NM_019239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019239.1 /DB_XREF=gi:9506896 /GEN=Mgat3 /FEA=FLmRNA /CNT=4 /TID=Rn.9803.1 /TIER=FL /STK=2 /UG=Rn.9803 /LL=29582 /DEF=Rattus norvegicus mannoside acetyl glucosaminyl transferase 3 (Mgat3), mRNA. /PROD=mannoside acetyl glucosaminyl transferase 3 /FL=gb:NM_019239.1 gb:D10852.1 NM_019239 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase Mgat3 29582 NM_019239 0006487 // protein N-linked glycosylation // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003830 // beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1369202_at NM_017028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017028.1 /DB_XREF=gi:8393796 /GEN=Mx1 /FEA=FLmRNA /CNT=4 /TID=Rn.10374.1 /TIER=FL /STK=2 /UG=Rn.10374 /LL=24575 /DEF=Rattus norvegicus Myxovirus (influenza) resistance, homolog of murine Mx (also interferon-inducible protein IFI78) (Mx1), mRNA. /PROD=myxovirus (influenza) resistance, homolog ofmurine Mx (also interferon-inducible protein IFI78) /FL=gb:NM_017028.1 NM_017028 myxovirus (influenza virus) resistance 2 Mx2 286918 NM_134350 0009615 // response to virus // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1369203_at NM_053738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053738.1 /DB_XREF=gi:16758559 /GEN=Wif1 /FEA=FLmRNA /CNT=4 /TID=Rn.74256.1 /TIER=FL /STK=2 /UG=Rn.74256 /LL=114557 /DEF=Rattus norvegicus Wnt inhibitory factor 1 (Wif1), mRNA. /PROD=Wnt inhibitory factor 1 /FL=gb:AY030278.1 gb:NM_053738.1 NM_053738 Wnt inhibitory factor 1 Wif1 114557 NM_053738 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0045600 // positive regulation of fat cell differentiation // not recorded 0005576 // extracellular region // inferred from electronic annotation 0004713 // protein tyrosine kinase activity // inferred from electronic annotation 1369204_at NM_013185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013185.1 /DB_XREF=gi:6981013 /GEN=Hck /FEA=FLmRNA /CNT=4 /TID=Rn.10945.1 /TIER=FL /STK=2 /UG=Rn.10945 /LL=25734 /DEF=Rattus norvegicus Hemopoietic cell tyrosine kinase (Hck), mRNA. /PROD=hemopoietic cell tyrosine kinase /FL=gb:M83666.1 gb:NM_013185.1 NM_013185 hemopoietic cell kinase Hck 25734 NM_013185 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006909 // phagocytosis // inferred from electronic annotation /// 0006909 // phagocytosis // not recorded /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // not recorded 0005901 // caveola // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1369205_at NM_019207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019207.1 /DB_XREF=gi:9506918 /GEN=Neurod3 /FEA=FLmRNA /CNT=4 /TID=Rn.10606.1 /TIER=FL /STK=2 /UG=Rn.10606 /LL=29410 /DEF=Rattus norvegicus neurogenic differentiation 3 (Neurod3), mRNA. /PROD=neurogenic differentiation 3 /FL=gb:U67777.1 gb:NM_019207.1 NM_019207 neurogenin 1 Neurog1 29410 NM_019207 0006350 // transcription // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // non-traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0031536 // positive regulation of exit from mitosis // inferred from electronic annotation /// 0031536 // positive regulation of exit from mitosis // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045165 // cell fate commitment // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043204 // perikaryon // inferred from electronic annotation /// 0043204 // perikaryon // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1369206_at NM_053617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053617.1 /DB_XREF=gi:16758413 /GEN=Cpb2 /FEA=FLmRNA /CNT=4 /TID=Rn.12572.1 /TIER=FL /STK=2 /UG=Rn.12572 /LL=113936 /DEF=Rattus norvegicus carboxypeptidase B2 (plasma) (Cpb2), mRNA. /PROD=carboxypeptidase B2 (plasma) /FL=gb:AB042598.1 gb:NM_053617.1 NM_053617 carboxypeptidase B2 (plasma) Cpb2 113936 NM_053617 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0009408 // response to heat // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0042730 // fibrinolysis // inferred from mutant phenotype /// 0051918 // negative regulation of fibrinolysis // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay 0004180 // carboxypeptidase activity // inferred from direct assay /// 0004180 // carboxypeptidase activity // not recorded /// 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369207_at NM_013110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013110.1 /DB_XREF=gi:6981099 /GEN=Il7 /FEA=FLmRNA /CNT=4 /TID=Rn.10793.1 /TIER=FL /STK=2 /UG=Rn.10793 /LL=25647 /DEF=Rattus norvegicus Interleukin 7 (Il7), mRNA. /PROD=interleukin 7 /FL=gb:AF010464.1 gb:AF367210.1 gb:NM_013110.1 NM_013110 interleukin 7 Il7 25647 NM_013110 0002360 // T cell lineage commitment // inferred from electronic annotation /// 0002360 // T cell lineage commitment // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // not recorded /// 0030890 // positive regulation of B cell proliferation // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // not recorded /// 0045453 // bone resorption // inferred from electronic annotation /// 0045453 // bone resorption // not recorded /// 0045453 // bone resorption // inferred from sequence or structural similarity /// 0045582 // positive regulation of T cell differentiation // inferred from electronic annotation /// 0045582 // positive regulation of T cell differentiation // not recorded /// 0045582 // positive regulation of T cell differentiation // inferred from sequence or structural similarity /// 0046622 // positive regulation of organ growth // inferred from electronic annotation /// 0046622 // positive regulation of organ growth // not recorded /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005125 // cytokine activity // inferred from sequence or structural similarity /// 0005126 // cytokine receptor binding // inferred from electronic annotation /// 0005139 // interleukin-7 receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0008083 // growth factor activity // inferred from sequence or structural similarity 1369208_at AF367210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF367210.1 /DB_XREF=gi:14039804 /GEN=IL-7 /FEA=FLmRNA /CNT=4 /TID=Rn.10793.1 /TIER=FL /STK=1 /UG=Rn.10793 /LL=25647 /DEF=Rattus norvegicus interleukin-7 (IL-7) mRNA, complete cds. /PROD=interleukin-7 /FL=gb:AF010464.1 gb:AF367210.1 gb:NM_013110.1 AF367210 interleukin 7 Il7 25647 NM_013110 0002360 // T cell lineage commitment // inferred from electronic annotation /// 0002360 // T cell lineage commitment // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // not recorded /// 0030890 // positive regulation of B cell proliferation // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // not recorded /// 0045453 // bone resorption // inferred from electronic annotation /// 0045453 // bone resorption // not recorded /// 0045453 // bone resorption // inferred from sequence or structural similarity /// 0045582 // positive regulation of T cell differentiation // inferred from electronic annotation /// 0045582 // positive regulation of T cell differentiation // not recorded /// 0045582 // positive regulation of T cell differentiation // inferred from sequence or structural similarity /// 0046622 // positive regulation of organ growth // inferred from electronic annotation /// 0046622 // positive regulation of organ growth // not recorded /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005125 // cytokine activity // inferred from sequence or structural similarity /// 0005126 // cytokine receptor binding // inferred from electronic annotation /// 0005139 // interleukin-7 receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0008083 // growth factor activity // inferred from sequence or structural similarity 1369209_at NM_134398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134398.1 /DB_XREF=gi:19705518 /GEN=P34 /FEA=FLmRNA /CNT=4 /TID=Rn.48724.1 /TIER=FL /STK=2 /UG=Rn.48724 /LL=171435 /DEF=Rattus norvegicus p34 protein (P34), mRNA. /PROD=p34 protein /FL=gb:NM_134398.1 gb:AF178669.1 NM_134398 alpha- and gamma-adaptin binding protein Aagab 171435 NM_134398 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // not recorded 1369210_at NM_030875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030875.1 /DB_XREF=gi:13540708 /GEN=Scn1a /FEA=FLmRNA /CNT=3 /TID=Rn.32079.1 /TIER=FL /STK=2 /UG=Rn.32079 /LL=81574 /DEF=Rattus norvegicus sodium channel, voltage-gated, type I, alpha (Scn1a), mRNA. /PROD=sodium channel, voltage-gated, type I, alpha /FL=gb:M22253.1 gb:NM_030875.1 NM_030875 sodium channel, voltage-gated, type I, alpha Scn1a 81574 NM_030875 0001508 // regulation of action potential // not recorded /// 0001508 // regulation of action potential // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // not recorded /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0007628 // adult walking behavior // inferred from electronic annotation /// 0007628 // adult walking behavior // not recorded /// 0019227 // neuronal action potential propagation // inferred from electronic annotation /// 0019227 // neuronal action potential propagation // not recorded /// 0019228 // regulation of action potential in neuron // inferred from direct assay /// 0019228 // regulation of action potential in neuron // inferred from mutant phenotype /// 0019228 // regulation of action potential in neuron // not recorded /// 0019228 // regulation of action potential in neuron // traceable author statement /// 0019228 // regulation of action potential in neuron // inferred from electronic annotation /// 0034765 // regulation of ion transmembrane transport // not recorded /// 0042391 // regulation of membrane potential // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0050884 // neuromuscular process controlling posture // inferred from electronic annotation /// 0050884 // neuromuscular process controlling posture // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0001518 // voltage-gated sodium channel complex // inferred from direct assay /// 0001518 // voltage-gated sodium channel complex // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0014704 // intercalated disc // inferred from electronic annotation /// 0014704 // intercalated disc // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030315 // T-tubule // inferred from electronic annotation /// 0030315 // T-tubule // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0033268 // node of Ranvier // inferred from electronic annotation /// 0033268 // node of Ranvier // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043194 // initial segment // inferred from electronic annotation /// 0043194 // initial segment // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005248 // voltage-gated sodium channel activity // inferred by curator /// 0005248 // voltage-gated sodium channel activity // inferred from direct assay /// 0005248 // voltage-gated sodium channel activity // inferred from electronic annotation /// 0005248 // voltage-gated sodium channel activity // inferred from mutant phenotype /// 0005248 // voltage-gated sodium channel activity // not recorded /// 0005248 // voltage-gated sodium channel activity // traceable author statement /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0031402 // sodium ion binding // inferred from direct assay 1369211_at NM_020084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020084.1 /DB_XREF=gi:9910149 /GEN=Cacna1i /FEA=FLmRNA /CNT=3 /TID=Rn.48680.1 /TIER=FL /STK=2 /UG=Rn.48680 /LL=56827 /DEF=Rattus norvegicus low voltage-activated T-type calcium channel alpha-1 subunit (CACNA1I) (Cacna1i), mRNA. /PROD=low voltage-activated T-type calcium channelalpha-1 subunit (CACNA1I) /FL=gb:NM_020084.1 gb:AF086827.1 NM_020084 calcium channel, voltage-dependent, T type, alpha 1I subunit Cacna1i 56827 NM_020084 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005891 // voltage-gated calcium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369212_s_at NM_021681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021681.1 /DB_XREF=gi:11067406 /GEN=LOC59317 /FEA=FLmRNA /CNT=3 /TID=Rn.42883.1 /TIER=FL /STK=2 /UG=Rn.42883 /LL=59317 /DEF=Rattus norvegicus hypothetical protein LOC59317 (LOC59317), mRNA. /PROD=hypothetical protein LOC59317 /FL=gb:NM_021681.1 gb:AB019257.1 NM_021681 erythrocyte protein band 4.1-like 1 Epb4.1l1 59317 NM_021681 /// NM_172090 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0019898 // extrinsic to membrane // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 1369213_at NM_017345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017345.1 /DB_XREF=gi:8393819 /GEN=NCAML1 /FEA=FLmRNA /CNT=3 /TID=Rn.10378.1 /TIER=FL /STK=2 /UG=Rn.10378 /LL=50687 /DEF=Rattus norvegicus neural cell adhesion molecule L1 (NCAML1), mRNA. /PROD=neural cell adhesion molecule L1 /FL=gb:NM_017345.1 NM_017345 L1 cell adhesion molecule L1cam 50687 NM_017345 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // not recorded /// 0007157 // heterophilic cell-cell adhesion // inferred from electronic annotation /// 0007157 // heterophilic cell-cell adhesion // not recorded /// 0007159 // leukocyte cell-cell adhesion // inferred from electronic annotation /// 0007159 // leukocyte cell-cell adhesion // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0022409 // positive regulation of cell-cell adhesion // inferred from electronic annotation /// 0022409 // positive regulation of cell-cell adhesion // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from electronic annotation /// 0031175 // neuron projection development // not recorded /// 0033631 // cell-cell adhesion mediated by integrin // inferred from electronic annotation /// 0033631 // cell-cell adhesion mediated by integrin // not recorded /// 0034109 // homotypic cell-cell adhesion // inferred from electronic annotation /// 0034109 // homotypic cell-cell adhesion // not recorded /// 0050850 // positive regulation of calcium-mediated signaling // inferred from electronic annotation /// 0050850 // positive regulation of calcium-mediated signaling // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0042734 // presynaptic membrane // not recorded /// 0043195 // terminal button // inferred from electronic annotation /// 0043195 // terminal button // not recorded 0005178 // integrin binding // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0033691 // sialic acid binding // inferred from electronic annotation /// 0033691 // sialic acid binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1369214_a_at NM_053529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053529.1 /DB_XREF=gi:16758941 /GEN=C2ta /FEA=FLmRNA /CNT=3 /TID=Rn.64573.1 /TIER=FL /STK=2 /UG=Rn.64573 /LL=85483 /DEF=Rattus norvegicus MHC class II transactivator (C2ta), mRNA. /PROD=MHC class II transactivator /FL=gb:AF251305.1 gb:NM_053529.1 NM_053529 class II transactivator Ciita 85483 NM_053529 0006954 // inflammatory response // inferred from expression pattern /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0034341 // response to interferon-gamma // inferred from electronic annotation /// 0034341 // response to interferon-gamma // not recorded /// 0045348 // positive regulation of MHC class II biosynthetic process // inferred from direct assay /// 0045348 // positive regulation of MHC class II biosynthetic process // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0046677 // response to antibiotic // not recorded 0005634 // nucleus // inferred by curator 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from direct assay /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from direct assay /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0032403 // protein complex binding // not recorded /// 0033613 // transcription activator binding // inferred from electronic annotation /// 0033613 // transcription activator binding // not recorded /// 0043130 // ubiquitin binding // inferred from electronic annotation 1369215_a_at NM_012836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012836.1 /DB_XREF=gi:6978698 /GEN=Cpd /FEA=FLmRNA /CNT=3 /TID=Rn.25905.1 /TIER=FL /STK=2 /UG=Rn.25905 /LL=25306 /DEF=Rattus norvegicus Carboxypeptidase D precursor (Cpd), mRNA. /PROD=carboxypeptidase D precursor /FL=gb:U62897.1 gb:NM_012836.1 NM_012836 carboxypeptidase D Cpd 25306 NM_012836 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // inferred from sequence or structural similarity /// 0071352 // cellular response to interleukin-2 // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from electronic annotation 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activity // inferred from sequence or structural similarity /// 0004185 // serine-type carboxypeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369216_a_at AF402786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF402786.1 /DB_XREF=gi:16033529 /GEN=Vegfr3 /FEA=FLmRNA /CNT=1 /TID=Rn.81043.2 /TIER=FL /STK=1 /UG=Rn.81043 /LL=114110 /DEF=Rattus norvegicus receptor tyrosine kinase VEGFR-3kt (Vegfr3) mRNA, complete cds, alternatively spliced. /PROD=receptor tyrosine kinase VEGFR-3kt /FL=gb:AF402786.1 AF402786 fms-related tyrosine kinase 4 Flt4 114110 NM_053652 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0016310 // phosphorylation // not recorded /// 0030307 // positive regulation of cell growth // inferred from direct assay /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from mutant phenotype /// 0048010 // vascular endothelial growth factor receptor signaling pathway // not recorded /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005021 // vascular endothelial growth factor receptor activity // inferred from electronic annotation /// 0005021 // vascular endothelial growth factor receptor activity // inferred from mutant phenotype /// 0005021 // vascular endothelial growth factor receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from mutant phenotype 1369217_at NM_017352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017352.1 /DB_XREF=gi:8393837 /GEN=NOR-2 /FEA=FLmRNA /CNT=3 /TID=Rn.37450.1 /TIER=FL /STK=2 /UG=Rn.37450 /LL=50694 /DEF=Rattus norvegicus neuron-derived orphan receptor (NOR-2), mRNA. /PROD=neuron-derived orphan receptor /FL=gb:NM_017352.1 NM_017352 nuclear receptor subfamily 4, group A, member 3 Nr4a3 58853 NM_017352 /// NM_031628 0001707 // mesoderm formation // inferred from electronic annotation /// 0001707 // mesoderm formation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0030534 // adult behavior // inferred from electronic annotation /// 0030534 // adult behavior // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0042472 // inner ear morphogenesis // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048752 // semicircular canal morphogenesis // inferred from electronic annotation /// 0048752 // semicircular canal morphogenesis // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0060005 // vestibular reflex // inferred from electronic annotation /// 0060005 // vestibular reflex // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1369218_at NM_031517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031517.1 /DB_XREF=gi:13928699 /GEN=Met /FEA=FLmRNA /CNT=3 /TID=Rn.10617.1 /TIER=FL /STK=2 /UG=Rn.10617 /LL=24553 /DEF=Rattus norvegicus Met proto-oncogene (Met), mRNA. /PROD=met proto-oncogene /FL=gb:NM_031517.1 gb:U65007.1 NM_031517 met proto-oncogene Met 24553 NM_031517 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0001101 // response to acid // inferred from expression pattern /// 0001764 // neuron migration // inferred from direct assay /// 0001764 // neuron migration // inferred from mutant phenotype /// 0001889 // liver development // inferred from expression pattern /// 0001889 // liver development // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001890 // placenta development // inferred from electronic annotation /// 0001890 // placenta development // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007517 // muscle organ development // not recorded /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0007569 // cell aging // inferred from expression pattern /// 0007595 // lactation // inferred from expression pattern /// 0008584 // male gonad development // inferred from expression pattern /// 0009611 // response to wounding // inferred from expression pattern /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0010800 // positive regulation of peptidyl-threonine phosphorylation // inferred from mutant phenotype /// 0010801 // negative regulation of peptidyl-threonine phosphorylation // inferred from mutant phenotype /// 0010976 // positive regulation of neuron projection development // inferred from mutant phenotype /// 0014003 // oligodendrocyte development // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014812 // muscle cell migration // inferred from electronic annotation /// 0014812 // muscle cell migration // not recorded /// 0014902 // myotube differentiation // inferred from electronic annotation /// 0014902 // myotube differentiation // not recorded /// 0021953 // central nervous system neuron differentiation // inferred from expression pattern /// 0030317 // sperm motility // inferred from mutant phenotype /// 0030534 // adult behavior // inferred from electronic annotation /// 0030534 // adult behavior // not recorded /// 0030707 // ovarian follicle cell development // inferred from expression pattern /// 0031016 // pancreas development // inferred from expression pattern /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045740 // positive regulation of DNA replication // inferred from mutant phenotype /// 0045840 // positive regulation of mitosis // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0048012 // hepatocyte growth factor receptor signaling pathway // not recorded /// 0048012 // hepatocyte growth factor receptor signaling pathway // inferred from electronic annotation /// 0050775 // positive regulation of dendrite morphogenesis // inferred from mutant phenotype /// 0051450 // myoblast proliferation // inferred from electronic annotation /// 0051450 // myoblast proliferation // not recorded /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0060665 // regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling // inferred from electronic annotation /// 0060665 // regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling // not recorded /// 0071241 // cellular response to inorganic substance // inferred from expression pattern /// 0071243 // cellular response to arsenic // inferred from expression pattern /// 0071333 // cellular response to glucose stimulus // inferred from expression pattern /// 0071354 // cellular response to interleukin-6 // inferred from expression pattern /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern /// 0071375 // cellular response to peptide hormone stimulus // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0009925 // basal plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019861 // flagellum // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0060076 // excitatory synapse // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005008 // hepatocyte growth factor receptor activity // inferred from mutant phenotype /// 0005008 // hepatocyte growth factor receptor activity // not recorded /// 0005008 // hepatocyte growth factor receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0043274 // phospholipase binding // inferred from physical interaction /// 0043548 // phosphoinositide 3-kinase binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay 1369219_at M80784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M80784.1 /DB_XREF=gi:207287 /FEA=FLmRNA /CNT=3 /TID=Rn.9953.1 /TIER=FL /STK=1 /UG=Rn.9953 /LL=29610 /UG_GENE=Tgfbr3 /DEF=R.norvegicus type III TGF-beta receptor mRNA, complete cds. /PROD=type III TGF-beta receptor /FL=gb:M77809.1 gb:M80784.1 gb:NM_017256.1 M80784 transforming growth factor, beta receptor III Tgfbr3 29610 NM_017256 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001824 // blastocyst development // inferred from electronic annotation /// 0001824 // blastocyst development // not recorded /// 0001837 // epithelial to mesenchymal transition // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0006461 // protein complex assembly // inferred from direct assay /// 0006955 // immune response // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // non-traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007181 // transforming growth factor beta receptor complex assembly // inferred from mutant phenotype /// 0007243 // intracellular protein kinase cascade // not recorded /// 0010633 // negative regulation of epithelial cell migration // inferred from electronic annotation /// 0010633 // negative regulation of epithelial cell migration // not recorded /// 0010719 // negative regulation of epithelial to mesenchymal transition // inferred from electronic annotation /// 0010719 // negative regulation of epithelial to mesenchymal transition // not recorded /// 0016049 // cell growth // inferred from mutant phenotype /// 0016310 // phosphorylation // not recorded /// 0030509 // BMP signaling pathway // not recorded /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0031100 // organ regeneration // inferred from expression pattern /// 0032354 // response to follicle-stimulating hormone stimulus // not recorded /// 0034695 // response to prostaglandin E stimulus // not recorded /// 0034699 // response to luteinizing hormone stimulus // not recorded /// 0043393 // regulation of protein binding // inferred from direct assay /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051271 // negative regulation of cellular component movement // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded /// 0060038 // cardiac muscle cell proliferation // inferred from electronic annotation /// 0060038 // cardiac muscle cell proliferation // not recorded /// 0060216 // definitive hemopoiesis // not recorded /// 0060216 // definitive hemopoiesis // inferred from electronic annotation /// 0060317 // cardiac epithelial to mesenchymal transition // not recorded /// 0060318 // definitive erythrocyte differentiation // inferred from electronic annotation /// 0060318 // definitive erythrocyte differentiation // not recorded /// 0060347 // heart trabecula formation // inferred from electronic annotation /// 0060347 // heart trabecula formation // not recorded /// 0060389 // pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0060389 // pathway-restricted SMAD protein phosphorylation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from direct assay /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // traceable author statement /// 0034673 // inhibin-betaglycan-ActRII complex // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta receptor activity // not recorded /// 0005024 // transforming growth factor beta receptor activity // traceable author statement /// 0005024 // transforming growth factor beta receptor activity // inferred from electronic annotation /// 0005114 // type II transforming growth factor beta receptor binding // not recorded /// 0005160 // transforming growth factor beta receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005539 // glycosaminoglycan binding // not recorded /// 0005539 // glycosaminoglycan binding // traceable author statement /// 0005539 // glycosaminoglycan binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from direct assay /// 0015026 // coreceptor activity // not recorded /// 0030165 // PDZ domain binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // not recorded /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046332 // SMAD binding // not recorded /// 0048185 // activin binding // inferred from direct assay /// 0048603 // fibroblast growth factor 2 binding // inferred from direct assay /// 0050431 // transforming growth factor beta binding // inferred from direct assay /// 0050431 // transforming growth factor beta binding // not recorded /// 0050431 // transforming growth factor beta binding // non-traceable author statement /// 0050431 // transforming growth factor beta binding // inferred from electronic annotation /// 0070123 // transforming growth factor beta receptor activity, type III // inferred from direct assay /// 0070123 // transforming growth factor beta receptor activity, type III // not recorded 1369220_at NM_053655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053655.1 /DB_XREF=gi:16758467 /GEN=Dnm1l /FEA=FLmRNA /CNT=3 /TID=Rn.10830.1 /TIER=FL /STK=2 /UG=Rn.10830 /LL=114114 /DEF=Rattus norvegicus dynamin 1-like (Dnm1l), mRNA. /PROD=dynamin 1-like /FL=gb:AF019043.1 gb:NM_053655.1 NM_053655 dynamin 1-like Dnm1l 114114 NM_053655 0043653 // mitochondrial fragmentation involved in apoptosis // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // not recorded /// 0005777 // peroxisome // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1369221_at NM_053999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053999.1 /DB_XREF=gi:16758909 /GEN=Ppp2r2a /FEA=FLmRNA /CNT=3 /TID=Rn.81155.1 /TIER=ConsEnd /STK=0 /UG=Rn.81155 /LL=117104 /DEF=Rattus norvegicus protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform (Ppp2r2a), mRNA. /PROD=protein phosphatase 2 (formerly 2A), regulatorysubunit B (PR 52), alpha isoform /FL=gb:NM_053999.1 gb:M83298.1 NM_053999 protein phosphatase 2 (formerly 2A), regulatory subunit B, alpha isoform Ppp2r2a 117104 NM_053999 0006470 // protein dephosphorylation // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0043278 // response to morphine // inferred from electronic annotation /// 0043278 // response to morphine // not recorded 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation /// 0000159 // protein phosphatase type 2A complex // not recorded 0004722 // protein serine/threonine phosphatase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008601 // protein phosphatase type 2A regulator activity // inferred from electronic annotation 1369222_at NM_021853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021853.1 /DB_XREF=gi:11177891 /GEN=Slack /FEA=FLmRNA /CNT=3 /TID=Rn.44275.1 /TIER=FL /STK=2 /UG=Rn.44275 /LL=60444 /DEF=Rattus norvegicus potassium channel subunit (Slack) (Slack), mRNA. /PROD=potassium channel subunit (Slack) /FL=gb:AF089730.1 gb:NM_021853.1 NM_021853 potassium channel, subfamily T, member 1 Kcnt1 60444 NM_021853 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from direct assay /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from direct assay /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0015269 // calcium-activated potassium channel activity // inferred from electronic annotation 1369223_at L37203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L37203.1 /DB_XREF=gi:806490 /GEN=GC-D /FEA=FLmRNA /CNT=3 /TID=Rn.10067.1 /TIER=FL /STK=2 /UG=Rn.10067 /DEF=Rattus norvegicus guanylyl cyclase (GC-D) mRNA, complete cds. /PROD=guanylyl cyclase /FL=gb:NM_130737.1 gb:L37203.1 L37203 guanylate cyclase 2d Gucy2d 113911 NM_130737 0006182 // cGMP biosynthetic process // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation 1369224_at NM_053977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053977.1 /DB_XREF=gi:16758871 /GEN=Cdh17 /FEA=FLmRNA /CNT=3 /TID=Rn.76726.1 /TIER=FL /STK=2 /UG=Rn.76726 /LL=117048 /DEF=Rattus norvegicus cadherin 17 (Cdh17), mRNA. /PROD=cadherin 17 /FL=gb:NM_053977.1 NM_053977 cadherin 17 Cdh17 117048 NM_053977 0006857 // oligopeptide transport // inferred from electronic annotation /// 0006857 // oligopeptide transport // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // not recorded /// 0016339 // calcium-dependent cell-cell adhesion // inferred from electronic annotation /// 0016339 // calcium-dependent cell-cell adhesion // not recorded /// 0055085 // transmembrane transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay 0005427 // proton-dependent oligopeptide secondary active transmembrane transporter activity // inferred from electronic annotation /// 0005427 // proton-dependent oligopeptide secondary active transmembrane transporter activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369225_at NM_012741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012741.1 /DB_XREF=gi:7549772 /GEN=Kngk /FEA=FLmRNA /CNT=3 /TID=Rn.44576.1 /TIER=FL /STK=2 /UG=Rn.44576 /LL=25087 /DEF=Rattus norvegicus K-kininogen, differential splicing leads to HMW Kngk (Kngk), mRNA. /PROD=k-kininogen, differential splicing leads to HMWKngk /FL=gb:NM_012741.1 gb:L29428.1 NM_012741 kininogen 2 Kng2 25087 NM_001102418 /// NM_012741 0001938 // positive regulation of endothelial cell proliferation // inferred from direct assay /// 0006953 // acute-phase response // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation /// 0042130 // negative regulation of T cell proliferation // inferred from direct assay /// 0042311 // vasodilation // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // inferred from direct assay /// 0043410 // positive regulation of MAPKKK cascade // inferred from direct assay /// 0045861 // negative regulation of proteolysis // inferred from direct assay /// 0048146 // positive regulation of fibroblast proliferation // inferred from direct assay /// 0050672 // negative regulation of lymphocyte proliferation // inferred from direct assay /// 0050880 // regulation of blood vessel size // inferred from electronic annotation /// 0052548 // regulation of endopeptidase activity // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from direct assay /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1369226_at M14369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M14369 /DB_XREF=gi:205073 /FEA=FLmRNA /CNT=3 /TID=Rn.44576.1 /TIER=ConsEnd /STK=0 /UG=Rn.44576 /LL=25087 /UG_GENE=Kngk /UG_TITLE=K-kininogen, differential splicing leads to HMW Kngk /DEF=Rat high molecular weight (HMW), and low molecular weight (LMW) K-kininogen genes, 3 end, clone pgKG1 /FL=gb:NM_012741.1 gb:L29428.1 M14369 kininogen 1 /// kininogen 1-like 1 Kng1 /// Kng1l1 24903 /// 288001 NM_001009628 /// NM_012696 0001938 // positive regulation of endothelial cell proliferation // inferred from direct assay /// 0006953 // acute-phase response // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007162 // negative regulation of cell adhesion // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007596 // blood coagulation // inferred from electronic annotation /// 0030195 // negative regulation of blood coagulation // not recorded /// 0042130 // negative regulation of T cell proliferation // inferred from direct assay /// 0042311 // vasodilation // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // inferred from direct assay /// 0043410 // positive regulation of MAPKKK cascade // inferred from direct assay /// 0045861 // negative regulation of proteolysis // inferred from direct assay /// 0048146 // positive regulation of fibroblast proliferation // inferred from direct assay /// 0050672 // negative regulation of lymphocyte proliferation // inferred from direct assay /// 0050880 // regulation of blood vessel size // inferred from electronic annotation /// 0052548 // regulation of endopeptidase activity // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from direct assay /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1369227_at NM_017067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017067.1 /DB_XREF=gi:8393109 /GEN=Chm /FEA=FLmRNA /CNT=3 /TID=Rn.10191.1 /TIER=FL /STK=2 /UG=Rn.10191 /LL=24942 /DEF=Rattus norvegicus Choroideremia (Chm), mRNA. /PROD=choroideremia /FL=gb:L13722.1 gb:NM_017067.1 NM_017067 choroideremia (Rab escort protein 1) Chm 24942 NM_017067 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0043087 // regulation of GTPase activity // inferred from electronic annotation 0005968 // Rab-protein geranylgeranyltransferase complex // inferred from electronic annotation 0004663 // Rab geranylgeranyltransferase activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017137 // Rab GTPase binding // inferred from direct assay 1369228_at NM_031048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031048.1 /DB_XREF=gi:13591978 /GEN=Lifr /FEA=FLmRNA /CNT=3 /TID=Rn.14529.1 /TIER=FL /STK=2 /UG=Rn.14529 /LL=81680 /DEF=Rattus norvegicus leukemia inhibitor factor receptor alpha-chain (Lifr), mRNA. /PROD=leukemia inhibitor factor receptor alpha-chain /FL=gb:NM_031048.1 gb:D86345.1 NM_031048 leukemia inhibitory factor receptor alpha Lifr 81680 NM_031048 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from mutant phenotype /// 0034097 // response to cytokine stimulus // inferred from electronic annotation /// 0034097 // response to cytokine stimulus // not recorded /// 0042221 // response to chemical stimulus // inferred from expression pattern /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0048812 // neuron projection morphogenesis // inferred from direct assay /// 0048861 // leukemia inhibitory factor signaling pathway // inferred from electronic annotation /// 0048861 // leukemia inhibitory factor signaling pathway // not recorded /// 0070120 // ciliary neurotrophic factor-mediated signaling pathway // inferred from electronic annotation /// 0070120 // ciliary neurotrophic factor-mediated signaling pathway // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004897 // ciliary neurotrophic factor receptor activity // not recorded /// 0004897 // ciliary neurotrophic factor receptor activity // inferred from electronic annotation /// 0004923 // leukemia inhibitory factor receptor activity // inferred from mutant phenotype /// 0004923 // leukemia inhibitory factor receptor activity // not recorded /// 0004923 // leukemia inhibitory factor receptor activity // inferred from electronic annotation /// 0004924 // oncostatin-M receptor activity // inferred from electronic annotation /// 0004924 // oncostatin-M receptor activity // not recorded /// 0005127 // ciliary neurotrophic factor receptor binding // inferred from electronic annotation /// 0005127 // ciliary neurotrophic factor receptor binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded /// 0019955 // cytokine binding // inferred from mutant phenotype 1369229_at NM_133584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133584.1 /DB_XREF=gi:19424279 /GEN=Pde5a /FEA=FLmRNA /CNT=3 /TID=Rn.10861.1 /TIER=FL /STK=2 /UG=Rn.10861 /LL=171115 /DEF=Rattus norvegicus phosphodiesterase 5A, cGMP-specific (Pde5a), mRNA. /PROD=phosphodiesterase 5A, cGMP-specific /FL=gb:D89093.1 gb:NM_133584.1 NM_133584 phosphodiesterase 5A, cGMP-specific Pde5a 171115 NM_133584 0001666 // response to hypoxia // inferred from expression pattern /// 0002026 // regulation of the force of heart contraction // inferred from mutant phenotype /// 0002678 // positive regulation of chronic inflammatory response // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007399 // nervous system development // inferred from expression pattern /// 0007614 // short-term memory // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0042311 // vasodilation // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype /// 0046069 // cGMP catabolic process // inferred from electronic annotation /// 0046069 // cGMP catabolic process // not recorded 0005829 // cytosol // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004112 // cyclic-nucleotide phosphodiesterase activity // not recorded /// 0004112 // cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030553 // cGMP binding // inferred from electronic annotation /// 0030553 // cGMP binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047555 // 3',5'-cyclic-GMP phosphodiesterase activity // inferred from direct assay /// 0047555 // 3',5'-cyclic-GMP phosphodiesterase activity // traceable author statement /// 0047555 // 3',5'-cyclic-GMP phosphodiesterase activity // inferred from electronic annotation 1369230_at NM_017292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017292.1 /DB_XREF=gi:8393402 /GEN=Gabrr2 /FEA=FLmRNA /CNT=3 /TID=Rn.48659.1 /TIER=FL /STK=2 /UG=Rn.48659 /LL=29695 /DEF=Rattus norvegicus gamma-aminobutyric acid (GABA-A) receptor, subunit rho 2 (Gabrr2), mRNA. /PROD=gamma-aminobutyric acid (GABA-A) receptor,subunit rho 2 /FL=gb:D38494.1 gb:NM_017292.1 NM_017292 gamma-aminobutyric acid (GABA) receptor, rho 2 Gabrr2 29695 NM_017292 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // not recorded /// 0007601 // visual perception // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0042462 // eye photoreceptor cell development // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004890 // GABA-A receptor activity // inferred from direct assay /// 0004890 // GABA-A receptor activity // inferred from expression pattern /// 0004890 // GABA-A receptor activity // not recorded /// 0004890 // GABA-A receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005237 // inhibitory extracellular ligand-gated ion channel activity // traceable author statement /// 0005254 // chloride channel activity // traceable author statement /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay 1369231_at NM_017292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017292.1 /DB_XREF=gi:8393402 /GEN=Gabrr2 /FEA=FLmRNA /CNT=3 /TID=Rn.48659.1 /TIER=ConsEnd /STK=0 /UG=Rn.48659 /LL=29695 /DEF=Rattus norvegicus gamma-aminobutyric acid (GABA-A) receptor, subunit rho 2 (Gabrr2), mRNA. /PROD=gamma-aminobutyric acid (GABA-A) receptor,subunit rho 2 /FL=gb:D38494.1 gb:NM_017292.1 NM_017292 1369232_at NM_023096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023096.2 /DB_XREF=gi:19923708 /GEN=Kcnk10 /FEA=FLmRNA /CNT=3 /TID=Rn.53999.1 /TIER=FL /STK=2 /UG=Rn.53999 /LL=65272 /DEF=Rattus norvegicus potassium channel TREK-2 (Kcnk10), mRNA. /PROD=potassium channel TREK-2 /FL=gb:AF196965.1 gb:AF385401.1 gb:NM_023096.2 NM_023096 potassium channel, subfamily K, member 10 Kcnk10 65272 NM_023096 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from direct assay /// 0005267 // potassium channel activity // inferred from electronic annotation 1369233_at AF196965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF196965.1 /DB_XREF=gi:8452899 /FEA=FLmRNA /CNT=3 /TID=Rn.53999.1 /TIER=FL /STK=1 /UG=Rn.53999 /LL=65272 /UG_GENE=Kcnk10 /DEF=Rattus norvegicus potassium channel TREK-2 mRNA, complete cds. /PROD=potassium channel TREK-2 /FL=gb:AF196965.1 gb:AF385401.1 gb:NM_023096.2 AF196965 potassium channel, subfamily K, member 10 Kcnk10 65272 NM_023096 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from direct assay /// 0005267 // potassium channel activity // inferred from electronic annotation 1369234_at NM_017223 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017223.1 /DB_XREF=gi:8394287 /GEN=Slc20a2 /FEA=FLmRNA /CNT=3 /TID=Rn.32076.1 /TIER=FL /STK=2 /UG=Rn.32076 /LL=29502 /DEF=Rattus norvegicus solute carrier family 20, member 2 (Slc20a2), mRNA. /PROD=solute carrier family 20, member 2 /FL=gb:NM_017223.1 gb:L19931.1 NM_017223 solute carrier family 20 (phosphate transporter), member 2 Slc20a2 29502 NM_017223 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006817 // phosphate transport // inferred from electronic annotation /// 0044419 // interspecies interaction between organisms // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005315 // inorganic phosphate transmembrane transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation 1369235_at NM_022207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022207.1 /DB_XREF=gi:11559981 /GEN=Unc5h2 /FEA=FLmRNA /CNT=3 /TID=Rn.34617.1 /TIER=FL /STK=2 /UG=Rn.34617 /LL=60630 /DEF=Rattus norvegicus transmembrane receptor Unc5H2 (Unc5h2), mRNA. /PROD=transmembrane receptor Unc5H2 /FL=gb:U87306.1 gb:NM_022207.1 NM_022207 unc-5 homolog B (C. elegans) Unc5b 60630 NM_022207 0006915 // apoptosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // inferred from direct assay 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005042 // netrin receptor activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation 1369236_at NM_133312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133312.1 /DB_XREF=gi:18959257 /GEN=Prdm4 /FEA=FLmRNA /CNT=3 /TID=Rn.48726.1 /TIER=FL /STK=2 /UG=Rn.48726 /LL=170820 /DEF=Rattus norvegicus PR domain containing 4 (Prdm4), mRNA. /PROD=PR domain containing 4 /FL=gb:AF176023.1 gb:NM_133312.1 NM_133312 PR domain containing 4 Prdm4 170820 NM_133312 0006350 // transcription // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0031670 // cellular response to nutrient // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005123 // death receptor binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369237_at NM_053996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053996.1 /DB_XREF=gi:16758903 /GEN=Prot /FEA=FLmRNA /CNT=3 /TID=Rn.9663.1 /TIER=FL /STK=2 /UG=Rn.9663 /LL=117100 /DEF=Rattus norvegicus proline transporter (Prot), mRNA. /PROD=proline transporter /FL=gb:M88111.1 gb:NM_053996.1 NM_053996 solute carrier family 6 (neurotransmitter transporter, L-proline), member 7 Slc6a7 117100 NM_053996 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from electronic annotation /// 0015824 // proline transport // inferred from direct assay 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005298 // proline:sodium symporter activity // not recorded /// 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0015193 // L-proline transmembrane transporter activity // inferred from direct assay /// 0015293 // symporter activity // inferred from electronic annotation 1369238_at NM_031815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031815.1 /DB_XREF=gi:13929159 /GEN=Inhbe /FEA=FLmRNA /CNT=3 /TID=Rn.30020.1 /TIER=FL /STK=2 /UG=Rn.30020 /LL=83711 /DEF=Rattus norvegicus activin beta E (Inhbe), mRNA. /PROD=activin beta E /FL=gb:AF140032.1 gb:NM_031815.1 gb:AF089825.1 NM_031815 inhibin beta E Inhbe 83711 NM_031815 0040007 // growth // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation 1369239_at NM_017106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017106.1 /DB_XREF=gi:8393140 /GEN=Clcn5 /FEA=FLmRNA /CNT=3 /TID=Rn.10337.1 /TIER=FL /STK=2 /UG=Rn.10337 /LL=25749 /DEF=Rattus norvegicus Chloride channel 5 (Clcn5), mRNA. /PROD=chloride channel 5 /FL=gb:D50497.1 gb:NM_017106.1 NM_017106 chloride channel 5 Clcn5 25749 NM_017106 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from direct assay /// 0006821 // chloride transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0006897 // endocytosis // not recorded /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0055085 // transmembrane transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0045177 // apical part of cell // not recorded /// 0045177 // apical part of cell // inferred from sequence or structural similarity /// 0045177 // apical part of cell // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005247 // voltage-gated chloride channel activity // inferred from direct assay /// 0005247 // voltage-gated chloride channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation 1369240_a_at NM_017205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017205.1 /DB_XREF=gi:8392955 /GEN=Avpr1b /FEA=FLmRNA /CNT=3 /TID=Rn.10096.1 /TIER=FL /STK=2 /UG=Rn.10096 /LL=29462 /DEF=Rattus norvegicus arginine vasopressin receptor 1B (Avpr1b), mRNA. /PROD=arginine vasopressin receptor 1B /FL=gb:D45400.1 gb:U27322.1 gb:NM_017205.1 NM_017205 arginine vasopressin receptor 1B Avpr1b 29462 NM_017205 0001992 // regulation of systemic arterial blood pressure by vasopressin // inferred from electronic annotation /// 0001992 // regulation of systemic arterial blood pressure by vasopressin // not recorded /// 0006950 // response to stress // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // traceable author statement /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0010460 // positive regulation of heart rate // inferred from mutant phenotype /// 0014049 // positive regulation of glutamate secretion // inferred from mutant phenotype /// 0032849 // positive regulation of cellular pH reduction // inferred from mutant phenotype /// 0042538 // hyperosmotic salinity response // inferred from expression pattern /// 0045777 // positive regulation of blood pressure // inferred from mutant phenotype 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005000 // vasopressin receptor activity // inferred from direct assay /// 0005000 // vasopressin receptor activity // inferred from mutant phenotype /// 0005000 // vasopressin receptor activity // traceable author statement /// 0005000 // vasopressin receptor activity // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred from direct assay /// 0017046 // peptide hormone binding // inferred from mutant phenotype /// 0042803 // protein homodimerization activity // inferred from direct assay 1369241_at U27322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U27322.1 /DB_XREF=gi:945040 /FEA=FLmRNA /CNT=3 /TID=Rn.10096.1 /TIER=FL /STK=1 /UG=Rn.10096 /LL=29462 /UG_GENE=Avpr1b /DEF=Rattus norvegicus arginine-vasopressin V1b receptor mRNA, complete cds. /PROD=arginine-vasopressin V1b receptor /FL=gb:D45400.1 gb:U27322.1 gb:NM_017205.1 U27322 arginine vasopressin receptor 1B Avpr1b 29462 NM_017205 0001992 // regulation of systemic arterial blood pressure by vasopressin // inferred from electronic annotation /// 0001992 // regulation of systemic arterial blood pressure by vasopressin // not recorded /// 0006950 // response to stress // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // traceable author statement /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0010460 // positive regulation of heart rate // inferred from mutant phenotype /// 0014049 // positive regulation of glutamate secretion // inferred from mutant phenotype /// 0032849 // positive regulation of cellular pH reduction // inferred from mutant phenotype /// 0042538 // hyperosmotic salinity response // inferred from expression pattern /// 0045777 // positive regulation of blood pressure // inferred from mutant phenotype 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005000 // vasopressin receptor activity // inferred from direct assay /// 0005000 // vasopressin receptor activity // inferred from mutant phenotype /// 0005000 // vasopressin receptor activity // traceable author statement /// 0005000 // vasopressin receptor activity // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred from direct assay /// 0017046 // peptide hormone binding // inferred from mutant phenotype /// 0042803 // protein homodimerization activity // inferred from direct assay 1369242_at NM_013001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013001.1 /DB_XREF=gi:6981333 /GEN=Pax6 /FEA=FLmRNA /CNT=3 /TID=Rn.10585.1 /TIER=FL /STK=2 /UG=Rn.10585 /LL=25509 /DEF=Rattus norvegicus Paired box homeotic gene 6 (Pax6), mRNA. /PROD=paired box homeotic gene 6 /FL=gb:NM_013001.1 NM_013001 paired box 6 Pax6 25509 NM_013001 0001709 // cell fate determination // not recorded /// 0001764 // neuron migration // inferred from mutant phenotype /// 0001764 // neuron migration // not recorded /// 0002052 // positive regulation of neuroblast proliferation // not recorded /// 0002088 // lens development in camera-type eye // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0007224 // smoothened signaling pathway // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007411 // axon guidance // not recorded /// 0007420 // brain development // inferred from mutant phenotype /// 0007420 // brain development // not recorded /// 0007435 // salivary gland morphogenesis // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009611 // response to wounding // not recorded /// 0009950 // dorsal/ventral axis specification // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0021543 // pallium development // not recorded /// 0021778 // oligodendrocyte cell fate specification // not recorded /// 0021797 // forebrain anterior/posterior pattern formation // not recorded /// 0021798 // forebrain dorsal/ventral pattern formation // not recorded /// 0021902 // commitment of neuronal cell to specific neuron type in forebrain // not recorded /// 0021905 // forebrain-midbrain boundary formation // not recorded /// 0021912 // regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification // not recorded /// 0021913 // regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification // not recorded /// 0021918 // regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment // not recorded /// 0021983 // pituitary gland development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030216 // keratinocyte differentiation // not recorded /// 0030334 // regulation of cell migration // not recorded /// 0030858 // positive regulation of epithelial cell differentiation // not recorded /// 0030900 // forebrain development // not recorded /// 0030902 // hindbrain development // inferred from direct assay /// 0032808 // lacrimal gland development // not recorded /// 0033365 // protein localization in organelle // not recorded /// 0042462 // eye photoreceptor cell development // not recorded /// 0042660 // positive regulation of cell fate specification // inferred from mutant phenotype /// 0043010 // camera-type eye development // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045664 // regulation of neuron differentiation // inferred from direct assay /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048505 // regulation of timing of cell differentiation // not recorded /// 0048708 // astrocyte differentiation // not recorded /// 0050678 // regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050767 // regulation of neurogenesis // inferred from mutant phenotype /// 0050767 // regulation of neurogenesis // not recorded 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0044424 // intracellular part // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003680 // AT DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003702 // RNA polymerase II transcription factor activity // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from reviewed computational analysis 1369243_at NM_017323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017323.1 /DB_XREF=gi:8394482 /GEN=Tr4 /FEA=FLmRNA /CNT=3 /TID=Rn.10485.1 /TIER=FL /STK=2 /UG=Rn.10485 /LL=50659 /DEF=Rattus norvegicus TR4 orphan receptor (Tr4), mRNA. /PROD=TR4 orphan receptor /FL=gb:NM_017323.1 gb:L27513.1 NM_017323 nuclear receptor subfamily 2, group C, member 2 Nr2c2 50659 NM_017323 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048137 // spermatocyte division // inferred from electronic annotation /// 0048137 // spermatocyte division // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1369244_at NM_012780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012780.1 /DB_XREF=gi:7549743 /GEN=Arnt1 /FEA=FLmRNA /CNT=3 /TID=Rn.10520.1 /TIER=FL /STK=2 /UG=Rn.10520 /LL=25242 /DEF=Rattus norvegicus Aryl hydrocarbon receptor nuclear translocator 1 (Arnt1), mRNA. /PROD=aryl hydrocarbon receptor nuclear translocator1 /FL=gb:U61184.1 gb:NM_012780.1 NM_012780 aryl hydrocarbon receptor nuclear translocator Arnt 25242 NM_012780 0001666 // response to hypoxia // inferred from expression pattern /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0001892 // embryonic placenta development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0009636 // response to toxin // non-traceable author statement /// 0010575 // positive regulation vascular endothelial growth factor production // inferred from electronic annotation /// 0010575 // positive regulation vascular endothelial growth factor production // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0033235 // positive regulation of protein sumoylation // inferred from electronic annotation /// 0033235 // positive regulation of protein sumoylation // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043619 // regulation of transcription from RNA polymerase II promoter in response to oxidative stress // inferred from electronic annotation /// 0043619 // regulation of transcription from RNA polymerase II promoter in response to oxidative stress // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046886 // positive regulation of hormone biosynthetic process // inferred from electronic annotation /// 0046886 // positive regulation of hormone biosynthetic process // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0017162 // aryl hydrocarbon receptor binding // inferred from electronic annotation /// 0017162 // aryl hydrocarbon receptor binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 1369245_at NM_031016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031016.1 /DB_XREF=gi:13591921 /GEN=Chrm2 /FEA=FLmRNA /CNT=3 /TID=Rn.10752.1 /TIER=FL /STK=2 /UG=Rn.10752 /LL=81645 /DEF=Rattus norvegicus muscarinic receptor m2 (Chrm2), mRNA. /PROD=muscarinic receptor m2 /FL=gb:NM_031016.1 gb:AB017655.1 gb:J03025.1 NM_031016 cholinergic receptor, muscarinic 2 Chrm2 81645 NM_031016 0006940 // regulation of smooth muscle contraction // inferred from direct assay /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007213 // muscarinic acetylcholine receptor signaling pathway // inferred from direct assay /// 0007213 // muscarinic acetylcholine receptor signaling pathway // not recorded /// 0007213 // muscarinic acetylcholine receptor signaling pathway // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0009615 // response to virus // inferred from electronic annotation /// 0009615 // response to virus // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0032279 // asymmetric synapse // inferred from direct assay /// 0032280 // symmetric synapse // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004981 // muscarinic acetylcholine receptor activity // inferred from direct assay /// 0004981 // muscarinic acetylcholine receptor activity // inferred from mutant phenotype /// 0004981 // muscarinic acetylcholine receptor activity // not recorded /// 0004981 // muscarinic acetylcholine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008144 // drug binding // inferred from direct assay 1369246_a_at U56078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U56078.1 /DB_XREF=gi:1438905 /FEA=FLmRNA /CNT=3 /TID=Rn.10532.1 /TIER=FL /STK=1 /UG=Rn.10532 /LL=25340 /UG_GENE=Npy5r /DEF=Rattus norvegicus Y5 receptor mRNA, complete cds. /PROD=Y5 receptor /FL=gb:NM_012869.1 gb:U56078.1 gb:U66274.1 U56078 neuropeptide Y receptor Y5 Npy5r 25340 NM_012869 0002675 // positive regulation of acute inflammatory response // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0014050 // negative regulation of glutamate secretion // inferred from mutant phenotype /// 0032229 // negative regulation of synaptic transmission, GABAergic // inferred from mutant phenotype /// 0042755 // eating behavior // inferred from mutant phenotype /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0060112 // generation of ovulation cycle rhythm // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001601 // peptide YY receptor activity // inferred from direct assay /// 0001601 // peptide YY receptor activity // not recorded /// 0001601 // peptide YY receptor activity // inferred from electronic annotation /// 0001602 // pancreatic polypeptide receptor activity // inferred from direct assay /// 0001602 // pancreatic polypeptide receptor activity // not recorded /// 0001602 // pancreatic polypeptide receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004983 // neuropeptide Y receptor activity // inferred from direct assay /// 0004983 // neuropeptide Y receptor activity // not recorded /// 0004983 // neuropeptide Y receptor activity // inferred from electronic annotation 1369247_at NM_012655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012655.1 /DB_XREF=gi:6981569 /GEN=Sp1 /FEA=FLmRNA /CNT=3 /TID=Rn.44609.1 /TIER=FL /STK=2 /UG=Rn.44609 /LL=24790 /DEF=Rattus norvegicus Sp1 transcription factor (Sp1), mRNA. /PROD=sp1 transcription factor /FL=gb:D12768.1 gb:NM_012655.1 NM_012655 Sp1 transcription factor Sp1 24790 NM_012655 0001503 // ossification // inferred from electronic annotation /// 0001503 // ossification // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001829 // trophectodermal cell differentiation // inferred from electronic annotation /// 0001829 // trophectodermal cell differentiation // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0001892 // embryonic placenta development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0030219 // megakaryocyte differentiation // inferred from electronic annotation /// 0030219 // megakaryocyte differentiation // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0043353 // enucleate erythrocyte differentiation // inferred from electronic annotation /// 0043353 // enucleate erythrocyte differentiation // not recorded /// 0043923 // positive regulation by host of viral transcription // inferred from electronic annotation /// 0043923 // positive regulation by host of viral transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045817 // positive regulation of transcription from RNA polymerase II promoter, global // inferred from electronic annotation /// 0045817 // positive regulation of transcription from RNA polymerase II promoter, global // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048596 // embryonic camera-type eye morphogenesis // inferred from electronic annotation /// 0048596 // embryonic camera-type eye morphogenesis // not recorded /// 0048706 // embryonic skeletal system development // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // not recorded /// 0060136 // embryonic process involved in female pregnancy // inferred from electronic annotation /// 0060136 // embryonic process involved in female pregnancy // not recorded /// 0060216 // definitive hemopoiesis // inferred from electronic annotation /// 0060216 // definitive hemopoiesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0032993 // protein-DNA complex // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // not recorded /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0035035 // histone acetyltransferase binding // inferred from physical interaction /// 0035326 // enhancer binding // inferred from electronic annotation /// 0035326 // enhancer binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369248_a_at AF304333 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF304333.1 /DB_XREF=gi:11890718 /FEA=FLmRNA /CNT=1 /TID=Rn.44824.3 /TIER=FL /STK=1 /UG=Rn.44824 /LL=63879 /UG_GENE=Api3 /DEF=Rattus norvegicus clone 1 inhibitor of apoptosis protein 3 mRNA, complete cds. /PROD=inhibitor of apoptosis protein 3 /FL=gb:AF304333.1 AF304333 X-linked inhibitor of apoptosis Xiap 63879 NM_022231 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // traceable author statement /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043154 // negative regulation of caspase activity // not recorded /// 0043154 // negative regulation of caspase activity // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // inferred from direct assay /// 0043524 // negative regulation of neuron apoptosis // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0043027 // caspase inhibitor activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1369249_at NM_053714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053714.1 /DB_XREF=gi:16758493 /GEN=Ank /FEA=FLmRNA /CNT=3 /TID=Rn.81030.1 /TIER=FL /STK=2 /UG=Rn.81030 /LL=114506 /DEF=Rattus norvegicus progressive ankylosis (Ank), mRNA. /PROD=progressive ankylosis /FL=gb:AF393241.1 gb:NM_053714.1 NM_053714 ankylosis, progressive homolog (mouse) Ankh 114506 NM_053714 0006810 // transport // inferred from electronic annotation /// 0006817 // phosphate transport // inferred from electronic annotation /// 0006817 // phosphate transport // traceable author statement /// 0030500 // regulation of bone mineralization // not recorded /// 0030500 // regulation of bone mineralization // inferred from sequence or structural similarity /// 0030500 // regulation of bone mineralization // traceable author statement /// 0030505 // inorganic diphosphate transport // not recorded /// 0034220 // ion transmembrane transport // not recorded 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // traceable author statement 0005315 // inorganic phosphate transmembrane transporter activity // not recorded /// 0005315 // inorganic phosphate transmembrane transporter activity // traceable author statement /// 0015114 // phosphate transmembrane transporter activity // inferred from electronic annotation /// 0030504 // inorganic diphosphate transmembrane transporter activity // not recorded /// 0030504 // inorganic diphosphate transmembrane transporter activity // inferred from sequence or structural similarity 1369250_at NM_053863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053863.1 /DB_XREF=gi:16758729 /GEN=Slc28a1 /FEA=FLmRNA /CNT=3 /TID=Rn.10517.1 /TIER=FL /STK=2 /UG=Rn.10517 /LL=116642 /DEF=Rattus norvegicus solute carrier family 28 (sodium-coupled nucleoside transporter), member 1 (Slc28a1), mRNA. /PROD=solute carrier family 28 (sodium-couplednucleoside transporter), member 1 /FL=gb:NM_053863.1 gb:U10279.1 NM_053863 solute carrier family 28 (sodium-coupled nucleoside transporter), member 1 Slc28a1 116642 NM_053863 0006810 // transport // inferred from electronic annotation /// 0015855 // pyrimidine transport // inferred from direct assay 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay 0001882 // nucleoside binding // inferred from electronic annotation /// 0005350 // pyrimidine transmembrane transporter activity // inferred from direct assay /// 0005415 // nucleoside:sodium symporter activity // not recorded /// 0005415 // nucleoside:sodium symporter activity // inferred from electronic annotation /// 0015389 // pyrimidine- and adenine-specific:sodium symporter activity // inferred from direct assay 1369251_a_at NM_019133 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019133.1 /DB_XREF=gi:9507158 /GEN=Syn1 /FEA=FLmRNA /CNT=3 /TID=Rn.9923.1 /TIER=FL /STK=2 /UG=Rn.9923 /LL=24949 /DEF=Rattus norvegicus Synapsin I (Syn1), mRNA. /PROD=synapsin I /FL=gb:NM_019133.1 gb:M27812.1 NM_019133 synapsin I Syn1 24949 NM_001110782 /// NM_019133 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // not recorded /// 0007269 // neurotransmitter secretion // traceable author statement 0000795 // synaptonemal complex // inferred from electronic annotation /// 0000795 // synaptonemal complex // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0048786 // presynaptic active zone // inferred from electronic annotation /// 0048786 // presynaptic active zone // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1369252_a_at L31620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L31620.1 /DB_XREF=gi:4028903 /FEA=FLmRNA /CNT=2 /TID=Rn.9697.2 /TIER=FL /STK=1 /UG=Rn.9697 /LL=25590 /UG_GENE=Chrna4 /DEF=Rattus norvegicus nicotinic acetylcholine receptor alpha 4 subunit mRNA, complete cds. /PROD=nicotinic acetylcholine receptor alpha 4subunit /FL=gb:L31620.1 L31620 cholinergic receptor, nicotinic, alpha 4 Chrna4 25590 NM_024354 0001508 // regulation of action potential // not recorded /// 0001666 // response to hypoxia // not recorded /// 0006281 // DNA repair // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006816 // calcium ion transport // not recorded /// 0006979 // response to oxidative stress // not recorded /// 0007165 // signal transduction // not recorded /// 0007271 // synaptic transmission, cholinergic // inferred from mutant phenotype /// 0007271 // synaptic transmission, cholinergic // not recorded /// 0007610 // behavior // not recorded /// 0007626 // locomotory behavior // not recorded /// 0014059 // regulation of dopamine secretion // not recorded /// 0019233 // sensory perception of pain // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0035094 // response to nicotine // not recorded /// 0035095 // behavioral response to nicotine // not recorded /// 0042113 // B cell activation // not recorded /// 0042391 // regulation of membrane potential // not recorded /// 0050877 // neurological system process // not recorded /// 0050890 // cognition // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051899 // membrane depolarization // not recorded /// 0060080 // regulation of inhibitory postsynaptic membrane potential // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from direct assay /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from mutant phenotype /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // not recorded /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // traceable author statement /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred by curator /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from direct assay /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // not recorded /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005216 // ion channel activity // not recorded /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0008144 // drug binding // inferred from direct assay /// 0015464 // acetylcholine receptor activity // not recorded /// 0042166 // acetylcholine binding // inferred from direct assay 1369253_at NM_053649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053649.1 /DB_XREF=gi:16758463 /GEN=Kremen /FEA=FLmRNA /CNT=3 /TID=Rn.60124.1 /TIER=FL /STK=2 /UG=Rn.60124 /LL=114107 /DEF=Rattus norvegicus kringle-coding gene marking the eye and the nose (Kremen), mRNA. /PROD=kringle-coding gene marking the eye and thenose /FL=gb:NM_053649.1 gb:AB065090.1 NM_053649 kringle containing transmembrane protein 1 Kremen1 114107 NM_053649 0007399 // nervous system development // non-traceable author statement /// 0007517 // muscle organ development // non-traceable author statement /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1369254_a_at D88752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D88752.1 /DB_XREF=gi:1752787 /FEA=FLmRNA /CNT=5 /TID=Rn.11423.2 /TIER=FL /STK=1 /UG=Rn.11423 /LL=25637 /UG_GENE=Ptger1 /DEF=Rattus norvegicus mRNA for prostaglandin E receptor EP1-variant form, complete cds. /PROD=prostaglandin E receptor EP1-variant form /FL=gb:D88752.1 D88752 prostaglandin E receptor 1 (subtype EP1) Ptger1 25637 NM_013100 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004955 // prostaglandin receptor activity // inferred from electronic annotation /// 0004957 // prostaglandin E receptor activity // inferred from direct assay /// 0004957 // prostaglandin E receptor activity // inferred from electronic annotation 1369255_at NM_013123 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013123.2 /DB_XREF=gi:19923704 /GEN=Il1r1 /FEA=FLmRNA /CNT=3 /TID=Rn.9758.1 /TIER=FL /STK=2 /UG=Rn.9758 /LL=25663 /DEF=Rattus norvegicus Interleukin 1 receptor, type I (Il1r1), mRNA. /PROD=interleukin 1 receptor, type I /FL=gb:NM_013123.2 gb:M95578.1 NM_013123 interleukin 1 receptor, type I Il1r1 25663 NM_013123 0007165 // signal transduction // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0030728 // ovulation // inferred from expression pattern /// 0045087 // innate immune response // inferred from electronic annotation /// 0070498 // interleukin-1-mediated signaling pathway // not recorded /// 0070498 // interleukin-1-mediated signaling pathway // inferred from electronic annotation /// 0070555 // response to interleukin-1 // inferred from expression pattern /// 0070555 // response to interleukin-1 // not recorded /// 0070555 // response to interleukin-1 // inferred from electronic annotation /// 0071731 // response to nitric oxide // inferred from expression pattern 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031224 // intrinsic to membrane // inferred from electronic annotation 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004908 // interleukin-1 receptor activity // not recorded /// 0004908 // interleukin-1 receptor activity // inferred from electronic annotation /// 0004909 // interleukin-1, Type I, activating receptor activity // inferred from electronic annotation /// 0005161 // platelet-derived growth factor receptor binding // not recorded /// 0005161 // platelet-derived growth factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1369256_at NM_019204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019204.1 /DB_XREF=gi:9506420 /GEN=Bace /FEA=FLmRNA /CNT=3 /TID=Rn.48895.1 /TIER=FL /STK=2 /UG=Rn.48895 /LL=29392 /DEF=Rattus norvegicus beta-site APP cleaving enzyme (Bace), mRNA. /PROD=beta-site APP cleaving enzyme /FL=gb:AF190727.1 gb:NM_019204.1 NM_019204 beta-site APP cleaving enzyme 1 Bace1 29392 NM_019204 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // inferred from sequence or structural similarity /// 0050435 // beta-amyloid metabolic process // inferred from mutant phenotype /// 0050435 // beta-amyloid metabolic process // not recorded /// 0050435 // beta-amyloid metabolic process // inferred from sequence or structural similarity /// 0050435 // beta-amyloid metabolic process // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005768 // endosome // inferred from direct assay /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from sequence or structural similarity /// 0005768 // endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded 0004175 // endopeptidase activity // not recorded /// 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0004190 // aspartic-type endopeptidase activity // not recorded /// 0004190 // aspartic-type endopeptidase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1369257_at NM_031096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031096.1 /DB_XREF=gi:13592044 /GEN=Rhok /FEA=FLmRNA /CNT=3 /TID=Rn.10548.1 /TIER=FL /STK=2 /UG=Rn.10548 /LL=81760 /DEF=Rattus norvegicus rhodopsin kinase (Rhok), mRNA. /PROD=rhodopsin kinase /FL=gb:NM_031096.1 gb:U63971.1 NM_031096 G protein-coupled receptor kinase 1 Grk1 81760 NM_031096 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0008594 // photoreceptor cell morphogenesis // inferred from electronic annotation /// 0008594 // photoreceptor cell morphogenesis // not recorded /// 0009416 // response to light stimulus // inferred from expression pattern /// 0009416 // response to light stimulus // not recorded /// 0009416 // response to light stimulus // inferred from electronic annotation /// 0009586 // rhodopsin mediated phototransduction // traceable author statement /// 0042327 // positive regulation of phosphorylation // inferred from electronic annotation /// 0042327 // positive regulation of phosphorylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0060060 // post-embryonic retina morphogenesis in camera-type eye // inferred from electronic annotation /// 0060060 // post-embryonic retina morphogenesis in camera-type eye // not recorded 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004703 // G-protein coupled receptor kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0050254 // rhodopsin kinase activity // inferred from direct assay /// 0050254 // rhodopsin kinase activity // traceable author statement /// 0050254 // rhodopsin kinase activity // inferred from electronic annotation 1369258_at NM_053465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053465.1 /DB_XREF=gi:16758211 /GEN=Fut9 /FEA=FLmRNA /CNT=3 /TID=Rn.67072.1 /TIER=FL /STK=2 /UG=Rn.67072 /LL=84597 /DEF=Rattus norvegicus fucosyltransferase 9 (alpha (1,3) fucosyltransferase) (Fut9), mRNA. /PROD=fucosyltransferase 9 (alpha (1,3)fucosyltransferase) /FL=gb:AF345993.1 gb:AB049819.1 gb:NM_053465.1 NM_053465 fucosyltransferase 9 (alpha (1,3) fucosyltransferase) Fut9 84597 NM_053465 0006486 // protein glycosylation // inferred from electronic annotation /// 0006486 // protein glycosylation // not recorded /// 0007399 // nervous system development // inferred from direct assay 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0008417 // fucosyltransferase activity // non-traceable author statement /// 0008417 // fucosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046920 // alpha(1,3)-fucosyltransferase activity // inferred from electronic annotation /// 0046920 // alpha(1,3)-fucosyltransferase activity // not recorded 1369259_at NM_021653 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021653.1 /DB_XREF=gi:11079648 /GEN=Dio1 /FEA=FLmRNA /CNT=3 /TID=Rn.42914.1 /TIER=FL /STK=2 /UG=Rn.42914 /LL=25430 /DEF=Rattus norvegicus Thyroxine deiodinase, type I (Dio1), mRNA. /PROD=thyroxine deiodinase, type I /FL=gb:NM_021653.1 NM_021653 deiodinase, iodothyronine, type I Dio1 25430 NM_021653 0006091 // generation of precursor metabolites and energy // non-traceable author statement /// 0008152 // metabolic process // not recorded /// 0042446 // hormone biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004800 // thyroxine 5'-deiodinase activity // inferred from direct assay /// 0004800 // thyroxine 5'-deiodinase activity // not recorded /// 0004800 // thyroxine 5'-deiodinase activity // inferred from electronic annotation /// 0008430 // selenium binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1369260_a_at NM_021265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021265.1 /DB_XREF=gi:10864070 /GEN=Mpp4 /FEA=FLmRNA /CNT=3 /TID=Rn.44826.1 /TIER=FL /STK=2 /UG=Rn.44826 /LL=58808 /DEF=Rattus norvegicus membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4) (Mpp4), mRNA. /PROD=membrane protein, palmitoylated 4 (MAGUK p55subfamily member 4) /FL=gb:NM_021265.1 gb:AB030500.1 NM_021265 membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4) Mpp4 58808 NM_021265 0005737 // cytoplasm // inferred from electronic annotation 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1369261_at NM_053608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053608.1 /DB_XREF=gi:16758399 /GEN=Kcnj13 /FEA=FLmRNA /CNT=3 /TID=Rn.14516.1 /TIER=FL /STK=2 /UG=Rn.14516 /LL=94341 /DEF=Rattus norvegicus potassium inwardly-rectifying channel,subfamily J, member 13 (Kcnj13), mRNA. /PROD=potassium inwardly-rectifying channel,subfamilyJ, member 13 /FL=gb:NM_053608.1 gb:AB013890.1 NM_053608 potassium inwardly-rectifying channel, subfamily J, member 13 Kcnj13 94341 NM_053608 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation 1369262_at NM_022277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022277.1 /DB_XREF=gi:11560102 /GEN=Casp8 /FEA=FLmRNA /CNT=3 /TID=Rn.54474.1 /TIER=FL /STK=2 /UG=Rn.54474 /LL=64044 /DEF=Rattus norvegicus caspase-8 (Casp8), mRNA. /PROD=caspase-8 /FL=gb:AF288372.1 gb:NM_022277.1 gb:AF279308.1 NM_022277 caspase 8 Casp8 64044 NM_022277 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0001841 // neural tube formation // inferred from electronic annotation /// 0001841 // neural tube formation // not recorded /// 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from mutant phenotype /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0008152 // metabolic process // not recorded /// 0008624 // induction of apoptosis by extracellular signals // inferred from electronic annotation /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0009409 // response to cold // inferred from expression pattern /// 0030225 // macrophage differentiation // inferred from electronic annotation /// 0030225 // macrophage differentiation // not recorded /// 0032025 // response to cobalt ion // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0034612 // response to tumor necrosis factor // inferred from electronic annotation /// 0034612 // response to tumor necrosis factor // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0045471 // response to ethanol // inferred from direct assay /// 0046677 // response to antibiotic // inferred from expression pattern /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation /// 0051603 // proteolysis involved in cellular protein catabolic process // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0030690 // Noc1p-Noc2p complex // inferred from electronic annotation /// 0030690 // Noc1p-Noc2p complex // not recorded /// 0031264 // death-inducing signaling complex // not recorded /// 0031264 // death-inducing signaling complex // inferred from electronic annotation /// 0031265 // CD95 death-inducing signaling complex // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0044297 // cell body // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0004197 // cysteine-type endopeptidase activity // inferred from direct assay /// 0004197 // cysteine-type endopeptidase activity // not recorded /// 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1369263_at NM_022631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022631.1 /DB_XREF=gi:12018323 /GEN=Wnt5a /FEA=FLmRNA /CNT=3 /TID=Rn.48749.1 /TIER=FL /STK=2 /UG=Rn.48749 /LL=64566 /DEF=Rattus norvegicus Wnt-5a protein (Wnt5a), mRNA. /PROD=Wnt-5a protein /FL=gb:NM_022631.1 gb:AF188333.1 NM_022631 wingless-type MMTV integration site family, member 5A Wnt5a 64566 NM_022631 0000187 // activation of MAPK activity // not recorded /// 0001667 // ameboidal cell migration // inferred from electronic annotation /// 0001667 // ameboidal cell migration // not recorded /// 0001736 // establishment of planar polarity // inferred from electronic annotation /// 0001736 // establishment of planar polarity // not recorded /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001756 // somitogenesis // not recorded /// 0001837 // epithelial to mesenchymal transition // not recorded /// 0001843 // neural tube closure // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0001947 // heart looping // inferred from electronic annotation /// 0001947 // heart looping // not recorded /// 0002009 // morphogenesis of an epithelium // not recorded /// 0002009 // morphogenesis of an epithelium // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0002741 // positive regulation of cytokine secretion involved in immune response // inferred from electronic annotation /// 0002741 // positive regulation of cytokine secretion involved in immune response // not recorded /// 0003323 // pancreatic B cell development // inferred from electronic annotation /// 0003323 // pancreatic B cell development // not recorded /// 0003344 // pericardium morphogenesis // inferred from electronic annotation /// 0003344 // pericardium morphogenesis // not recorded /// 0003401 // axis elongation // inferred from electronic annotation /// 0003401 // axis elongation // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007223 // Wnt receptor signaling pathway, calcium modulating pathway // inferred from electronic annotation /// 0007223 // Wnt receptor signaling pathway, calcium modulating pathway // not recorded /// 0007254 // JNK cascade // inferred from electronic annotation /// 0007254 // JNK cascade // not recorded /// 0007257 // activation of JUN kinase activity // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007442 // hindgut morphogenesis // inferred from electronic annotation /// 0007442 // hindgut morphogenesis // not recorded /// 0007494 // midgut development // inferred from electronic annotation /// 0007494 // midgut development // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from expression pattern /// 0010595 // positive regulation of endothelial cell migration // inferred from electronic annotation /// 0010595 // positive regulation of endothelial cell migration // not recorded /// 0010800 // positive regulation of peptidyl-threonine phosphorylation // inferred from electronic annotation /// 0010800 // positive regulation of peptidyl-threonine phosphorylation // not recorded /// 0010820 // positive regulation of T cell chemotaxis // inferred from electronic annotation /// 0010820 // positive regulation of T cell chemotaxis // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0021915 // neural tube development // inferred from electronic annotation /// 0021915 // neural tube development // not recorded /// 0022409 // positive regulation of cell-cell adhesion // inferred from mutant phenotype /// 0030154 // cell differentiation // inferred from expression pattern /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from expression pattern /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0030850 // prostate gland development // inferred from expression pattern /// 0032148 // activation of protein kinase B activity // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033138 // positive regulation of peptidyl-serine phosphorylation // not recorded /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0034613 // cellular protein localization // inferred from electronic annotation /// 0034613 // cellular protein localization // not recorded /// 0035108 // limb morphogenesis // not recorded /// 0035108 // limb morphogenesis // inferred from electronic annotation /// 0035121 // tail morphogenesis // inferred from electronic annotation /// 0035121 // tail morphogenesis // not recorded /// 0040037 // negative regulation of fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0040037 // negative regulation of fibroblast growth factor receptor signaling pathway // not recorded /// 0042060 // wound healing // inferred from electronic annotation /// 0042060 // wound healing // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043507 // positive regulation of JUN kinase activity // inferred from electronic annotation /// 0043507 // positive regulation of JUN kinase activity // not recorded /// 0045080 // positive regulation of chemokine biosynthetic process // inferred from electronic annotation /// 0045080 // positive regulation of chemokine biosynthetic process // not recorded /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // not recorded /// 0045732 // positive regulation of protein catabolic process // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // not recorded /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0045778 // positive regulation of ossification // not recorded /// 0045836 // positive regulation of meiosis // inferred from electronic annotation /// 0045836 // positive regulation of meiosis // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0046330 // positive regulation of JNK cascade // not recorded /// 0046546 // development of primary male sexual characteristics // not recorded /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0048286 // lung alveolus development // inferred from expression pattern /// 0048546 // digestive tract morphogenesis // not recorded /// 0048706 // embryonic skeletal system development // not recorded /// 0048806 // genitalia development // not recorded /// 0048843 // negative regulation of axon extension involved in axon guidance // inferred from electronic annotation /// 0048843 // negative regulation of axon extension involved in axon guidance // not recorded /// 0048850 // hypophysis morphogenesis // inferred from electronic annotation /// 0048850 // hypophysis morphogenesis // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050919 // negative chemotaxis // inferred from electronic annotation /// 0050919 // negative chemotaxis // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051216 // cartilage development // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051964 // negative regulation of synaptogenesis // not recorded /// 0055093 // response to hyperoxia // inferred from expression pattern /// 0060021 // palate development // not recorded /// 0060026 // convergent extension // not recorded /// 0060026 // convergent extension // inferred from electronic annotation /// 0060029 // convergent extension involved in organogenesis // inferred from electronic annotation /// 0060029 // convergent extension involved in organogenesis // not recorded /// 0060065 // uterus development // inferred from electronic annotation /// 0060065 // uterus development // not recorded /// 0060067 // cervix development // inferred from electronic annotation /// 0060067 // cervix development // not recorded /// 0060068 // vagina development // inferred from electronic annotation /// 0060068 // vagina development // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060071 // Wnt receptor signaling pathway, planar cell polarity pathway // inferred from electronic annotation /// 0060071 // Wnt receptor signaling pathway, planar cell polarity pathway // not recorded /// 0060157 // urinary bladder development // inferred from electronic annotation /// 0060157 // urinary bladder development // not recorded /// 0060210 // metestrus // inferred from expression pattern /// 0060324 // face development // not recorded /// 0060599 // lateral sprouting involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060599 // lateral sprouting involved in mammary gland duct morphogenesis // not recorded /// 0060606 // tube closure // not recorded /// 0060606 // tube closure // inferred from electronic annotation /// 0060638 // mesenchymal-epithelial cell signaling // inferred from electronic annotation /// 0060638 // mesenchymal-epithelial cell signaling // not recorded /// 0060686 // negative regulation of prostatic bud formation // inferred from electronic annotation /// 0060686 // negative regulation of prostatic bud formation // not recorded /// 0060744 // mammary gland branching involved in thelarche // inferred from electronic annotation /// 0060744 // mammary gland branching involved in thelarche // not recorded /// 0060750 // epithelial cell proliferation involved in mammary gland duct elongation // inferred from electronic annotation /// 0060750 // epithelial cell proliferation involved in mammary gland duct elongation // not recorded /// 0060760 // positive regulation of response to cytokine stimulus // inferred from electronic annotation /// 0060760 // positive regulation of response to cytokine stimulus // not recorded /// 0060762 // regulation of branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060762 // regulation of branching involved in mammary gland duct morphogenesis // not recorded /// 0060907 // positive regulation of macrophage cytokine production // inferred from electronic annotation /// 0060907 // positive regulation of macrophage cytokine production // not recorded /// 0061036 // positive regulation of cartilage development // inferred from electronic annotation /// 0061036 // positive regulation of cartilage development // not recorded /// 0070245 // positive regulation of thymocyte apoptosis // inferred from electronic annotation /// 0070245 // positive regulation of thymocyte apoptosis // not recorded /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071222 // cellular response to lipopolysaccharide // not recorded /// 0071277 // cellular response to calcium ion // inferred from electronic annotation /// 0071277 // cellular response to calcium ion // not recorded /// 0071346 // cellular response to interferon-gamma // inferred from electronic annotation /// 0071346 // cellular response to interferon-gamma // not recorded /// 0071425 // hemopoietic stem cell proliferation // inferred from electronic annotation /// 0071425 // hemopoietic stem cell proliferation // not recorded /// 0071542 // dopaminergic neuron differentiation // inferred from electronic annotation /// 0071542 // dopaminergic neuron differentiation // not recorded /// 0071560 // cellular response to transforming growth factor beta stimulus // not recorded /// 0072201 // negative regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0072201 // negative regulation of mesenchymal cell proliferation // not recorded /// 0090009 // primitive streak formation // inferred from electronic annotation /// 0090009 // primitive streak formation // not recorded /// 0090037 // positive regulation of protein kinase C signaling cascade // inferred from electronic annotation /// 0090037 // positive regulation of protein kinase C signaling cascade // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded /// 0090103 // cochlea morphogenesis // inferred from electronic annotation /// 0090103 // cochlea morphogenesis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0031012 // extracellular matrix // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005109 // frizzled binding // inferred from electronic annotation /// 0005109 // frizzled binding // not recorded /// 0005110 // frizzled-2 binding // inferred from electronic annotation /// 0005110 // frizzled-2 binding // not recorded /// 0005115 // receptor tyrosine kinase-like orphan receptor binding // inferred from electronic annotation /// 0005115 // receptor tyrosine kinase-like orphan receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded 1369264_at NM_057101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057101.1 /DB_XREF=gi:16923947 /GEN=Cyp21a1 /FEA=FLmRNA /CNT=3 /TID=Rn.81052.1 /TIER=FL /STK=2 /UG=Rn.81052 /LL=24298 /DEF=Rattus norvegicus Cytochrome P450, subfamily XXI (steroid 21-hydroxylase) (Cyp21a1), mRNA. /PROD=cytochrome P450, 21, steroid 21 hydroxylase /FL=gb:U56853.1 gb:NM_057101.1 NM_057101 cytochrome P450, family 21, subfamily a, polypeptide 1 Cyp21a1 24298 NM_057101 0006694 // steroid biosynthetic process // not recorded /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006700 // C21-steroid hormone biosynthetic process // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004509 // steroid 21-monooxygenase activity // inferred from direct assay /// 0004509 // steroid 21-monooxygenase activity // inferred from electronic annotation /// 0005496 // steroid binding // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369265_at NM_023989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023989.1 /DB_XREF=gi:13027449 /GEN=LOC78973 /FEA=FLmRNA /CNT=3 /TID=Rn.64580.1 /TIER=FL /STK=2 /UG=Rn.64580 /LL=78973 /DEF=Rattus norvegicus Axin-associating molecule (LOC78973), mRNA. /PROD=Axin-associating molecule /FL=gb:NM_023989.1 gb:AF260129.1 NM_023989 Sumo1/sentrin/SMT3 specific peptidase 2 Senp2 78973 NM_023989 0006508 // proteolysis // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016926 // protein desumoylation // inferred from electronic annotation /// 0016926 // protein desumoylation // not recorded /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // not recorded /// 0005643 // nuclear pore // inferred from sequence or structural similarity /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016929 // SUMO-specific protease activity // not recorded /// 0016929 // SUMO-specific protease activity // inferred from sequence or structural similarity /// 0016929 // SUMO-specific protease activity // inferred from electronic annotation 1369266_at NM_133538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133538.1 /DB_XREF=gi:19424197 /GEN=Il13ra2 /FEA=FLmRNA /CNT=3 /TID=Rn.43663.1 /TIER=FL /STK=2 /UG=Rn.43663 /DEF=Rattus norvegicus interleukin 13 receptor, alpha 2 (Il13ra2), mRNA. /PROD=interleukin 13 receptor, alpha 2 /FL=gb:NM_133538.1 gb:AF448818.1 NM_133538 interleukin 13 receptor, alpha 2 /// rCG23169-like Il13ra2 /// LOC100361488 100361488 /// 171060 NM_133538 /// XM_002730208 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // traceable author statement 1369267_at NM_024370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024370.1 /DB_XREF=gi:13242266 /GEN=Gabrg3 /FEA=FLmRNA /CNT=3 /TID=Rn.10369.1 /TIER=FL /STK=2 /UG=Rn.10369 /LL=79211 /DEF=Rattus norvegicus GABA-alpha receptor gamma-3 subunit (Gabrg3), mRNA. /PROD=GABA-alpha receptor gamma-3 subunit /FL=gb:NM_024370.1 gb:M81142.1 NM_024370 gamma-aminobutyric acid (GABA) A receptor, gamma 3 Gabrg3 79211 NM_024370 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // traceable author statement /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from electronic annotation /// 0042493 // response to drug // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004890 // GABA-A receptor activity // inferred from direct assay /// 0004890 // GABA-A receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from direct assay /// 0005254 // chloride channel activity // inferred from electronic annotation 1369268_at NM_012912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012912.1 /DB_XREF=gi:6978540 /GEN=Atf3 /FEA=FLmRNA /CNT=3 /TID=Rn.9664.1 /TIER=FL /STK=2 /UG=Rn.9664 /LL=25389 /DEF=Rattus norvegicus Activating transcription factor 3 (Atf3), mRNA. /PROD=activating transcription factor 3 /FL=gb:NM_012912.1 gb:M63282.1 NM_012912 activating transcription factor 3 Atf3 25389 NM_012912 0001709 // cell fate determination // traceable author statement /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006094 // gluconeogenesis // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0016481 // negative regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1369269_at NM_024373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024373.1 /DB_XREF=gi:13242272 /GEN=Galnt1 /FEA=FLmRNA /CNT=3 /TID=Rn.10266.1 /TIER=FL /STK=2 /UG=Rn.10266 /LL=79214 /DEF=Rattus norvegicus polypeptide GalNAc transferase T1 (Galnt1), mRNA. /PROD=polypeptide GalNAc transferase T1 /FL=gb:NM_024373.1 gb:U35890.1 NM_024373 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) Galnt1 79214 NM_024373 0006493 // protein O-linked glycosylation // not recorded /// 0006493 // protein O-linked glycosylation // traceable author statement /// 0006493 // protein O-linked glycosylation // inferred from electronic annotation /// 0018242 // protein O-linked glycosylation via serine // inferred from electronic annotation /// 0018242 // protein O-linked glycosylation via serine // not recorded /// 0018243 // protein O-linked glycosylation via threonine // inferred from electronic annotation /// 0018243 // protein O-linked glycosylation via threonine // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from mutant phenotype /// 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // not recorded /// 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0030145 // manganese ion binding // not recorded 1369270_at NM_052980 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_052980.1 /DB_XREF=gi:16418480 /GEN=Nr1i2 /FEA=FLmRNA /CNT=3 /TID=Rn.48713.1 /TIER=FL /STK=2 /UG=Rn.48713 /LL=84385 /DEF=Rattus norvegicus nuclear receptor subfamily 1, group I, member 2 (Nr1i2), mRNA. /PROD=nuclear receptor subfamily 1, group I, member 2 /FL=gb:NM_052980.1 gb:AF151377.1 NM_052980 nuclear receptor subfamily 1, group I, member 2 Nr1i2 84385 NM_052980 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006805 // xenobiotic metabolic process // inferred from electronic annotation /// 0006805 // xenobiotic metabolic process // not recorded /// 0006805 // xenobiotic metabolic process // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0042738 // exogenous drug catabolic process // inferred from electronic annotation /// 0042738 // exogenous drug catabolic process // not recorded /// 0042738 // exogenous drug catabolic process // inferred from sequence or structural similarity /// 0042908 // xenobiotic transport // inferred from electronic annotation /// 0042908 // xenobiotic transport // not recorded /// 0042908 // xenobiotic transport // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0046618 // drug export // inferred from electronic annotation /// 0046618 // drug export // not recorded /// 0046618 // drug export // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from direct assay /// 0004879 // ligand-dependent nuclear receptor activity // not recorded /// 0004879 // ligand-dependent nuclear receptor activity // inferred from sequence or structural similarity /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008144 // drug binding // inferred from electronic annotation /// 0008144 // drug binding // not recorded /// 0008144 // drug binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369271_at NM_022627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022627.1 /DB_XREF=gi:12018315 /GEN=Prkab2 /FEA=FLmRNA /CNT=3 /TID=Rn.48744.1 /TIER=FL /STK=2 /UG=Rn.48744 /LL=64562 /DEF=Rattus norvegicus AMP-activated protein kinase beta-2 regulatory subunit (Prkab2), mRNA. /PROD=AMP-activated protein kinase beta-2 regulatorysubunit /FL=gb:NM_022627.1 gb:AF182717.1 NM_022627 protein kinase, AMP-activated, beta 2 non-catalytic subunit Prkab2 64562 NM_022627 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0046320 // regulation of fatty acid oxidation // not recorded 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005952 // cAMP-dependent protein kinase complex // inferred from direct assay /// 0031588 // AMP-activated protein kinase complex // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction 1369272_at NM_012896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012896.1 /DB_XREF=gi:6978452 /GEN=Adora3 /FEA=FLmRNA /CNT=3 /TID=Rn.10457.1 /TIER=FL /STK=2 /UG=Rn.10457 /LL=25370 /DEF=Rattus norvegicus Adenosine receptor A3 (Adora3), mRNA. /PROD=adenosine receptor A3 /FL=gb:NM_012896.1 NM_012896 adenosine A3 receptor Adora3 25370 NM_012896 0001973 // adenosine receptor signaling pathway // inferred from electronic annotation /// 0001973 // adenosine receptor signaling pathway // not recorded /// 0002553 // histamine secretion by mast cell // inferred from electronic annotation /// 0002553 // histamine secretion by mast cell // not recorded /// 0002687 // positive regulation of leukocyte migration // inferred from electronic annotation /// 0002687 // positive regulation of leukocyte migration // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0014061 // regulation of norepinephrine secretion // inferred from mutant phenotype /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0043306 // positive regulation of mast cell degranulation // inferred from electronic annotation /// 0043306 // positive regulation of mast cell degranulation // not recorded /// 0050729 // positive regulation of inflammatory response // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // not recorded /// 0050850 // positive regulation of calcium-mediated signaling // inferred from electronic annotation /// 0050850 // positive regulation of calcium-mediated signaling // not recorded /// 0070257 // positive regulation of mucus secretion // inferred from electronic annotation /// 0070257 // positive regulation of mucus secretion // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay 0001609 // adenosine receptor activity, G-protein coupled // inferred from direct assay /// 0001609 // adenosine receptor activity, G-protein coupled // not recorded /// 0001609 // adenosine receptor activity, G-protein coupled // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1369273_a_at X78595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X78595.1 /DB_XREF=gi:496657 /FEA=mRNA /CNT=1 /TID=Rn.11297.2 /TIER=ConsEnd /STK=0 /UG=Rn.11297 /LL=25339 /UG_GENE=Npr3 /DEF=R.norvegicus mRNA homolog to natriuretic peptide clearance receptor. /PROD=homologue to natriuretic peptide clearancereceptor X78595 natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C) Npr3 25339 NM_012868 0001501 // skeletal system development // not recorded /// 0001501 // skeletal system development // inferred from sequence or structural similarity /// 0001501 // skeletal system development // inferred from electronic annotation /// 0002158 // osteoclast proliferation // not recorded /// 0002158 // osteoclast proliferation // inferred from sequence or structural similarity /// 0002158 // osteoclast proliferation // inferred from electronic annotation /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // inferred from mutant phenotype /// 0007194 // negative regulation of adenylate cyclase activity // inferred from direct assay /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from mutant phenotype /// 0008217 // regulation of blood pressure // inferred from mutant phenotype /// 0008217 // regulation of blood pressure // not recorded /// 0008217 // regulation of blood pressure // inferred from sequence or structural similarity /// 0030146 // diuresis // not recorded /// 0030146 // diuresis // inferred from sequence or structural similarity /// 0030146 // diuresis // inferred from electronic annotation /// 0030157 // pancreatic juice secretion // inferred from mutant phenotype /// 0033688 // regulation of osteoblast proliferation // not recorded /// 0033688 // regulation of osteoblast proliferation // inferred from sequence or structural similarity /// 0033688 // regulation of osteoblast proliferation // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0008528 // peptide receptor activity, G-protein coupled // inferred from electronic annotation /// 0016941 // natriuretic peptide receptor activity // inferred from mutant phenotype /// 0016941 // natriuretic peptide receptor activity // not recorded /// 0016941 // natriuretic peptide receptor activity // inferred from sequence or structural similarity /// 0016941 // natriuretic peptide receptor activity // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred from direct assay /// 0042562 // hormone binding // not recorded /// 0042562 // hormone binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay 1369274_a_at NM_021772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021772.1 /DB_XREF=gi:13489070 /GEN=Nkiatreb /FEA=FLmRNA /CNT=3 /TID=Rn.45596.1 /TIER=FL /STK=2 /UG=Rn.45596 /LL=60396 /DEF=Rattus norvegicus serinethreonine kinase NKIATRE beta (Nkiatreb), mRNA. /PROD=serinethreonine kinase NKIATRE beta /FL=gb:AF112183.1 gb:NM_021772.1 NM_021772 cyclin-dependent kinase-like 3 Cdkl3 60396 NM_001174131 /// NM_021772 0006468 // protein phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1369275_s_at NM_012692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012692.1 /DB_XREF=gi:6978738 /GEN=Cyp2a1 /FEA=FLmRNA /CNT=3 /TID=Rn.32107.1 /TIER=FL /STK=2 /UG=Rn.32107 /LL=24894 /DEF=Rattus norvegicus Cytochrome P450 IIA1 (hepatic steroid hydroxylase IIA1) gene (Cyp2a1), mRNA. /PROD=cytochrome P450 IIA1 (hepatic steroidhydroxylase IIA1) gene /FL=gb:NM_012692.1 gb:J02669.1 NM_012692 cytochrome P450, family 2, subfamily a, polypeptide 1 /// cytochrome P450, family 2, subfamily a, polypeptide 2 Cyp2a1 /// Cyp2a2 24894 /// 24895 NM_012692 /// NM_012693 0009804 // coumarin metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008395 // steroid hydroxylase activity // inferred from direct assay /// 0008395 // steroid hydroxylase activity // traceable author statement /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1369276_at NM_021692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021692.1 /DB_XREF=gi:11067422 /GEN=Madh5 /FEA=FLmRNA /CNT=3 /TID=Rn.42904.1 /TIER=FL /STK=2 /UG=Rn.42904 /LL=59328 /DEF=Rattus norvegicus Smad5 (Madh5), mRNA. /PROD=Smad5 /FL=gb:NM_021692.1 gb:AB010955.1 NM_021692 SMAD family member 5 Smad5 59328 NM_021692 0001503 // ossification // inferred from expression pattern /// 0001657 // ureteric bud development // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001880 // Mullerian duct regression // inferred from mutant phenotype /// 0002051 // osteoblast fate commitment // not recorded /// 0002051 // osteoblast fate commitment // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007281 // germ cell development // not recorded /// 0007281 // germ cell development // inferred from electronic annotation /// 0009880 // embryonic pattern specification // inferred from sequence or structural similarity /// 0030218 // erythrocyte differentiation // not recorded /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030278 // regulation of ossification // non-traceable author statement /// 0030509 // BMP signaling pathway // not recorded /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030509 // BMP signaling pathway // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0060048 // cardiac muscle contraction // not recorded /// 0060048 // cardiac muscle contraction // inferred from electronic annotation /// 0071407 // cellular response to organic cyclic substance // not recorded /// 0071407 // cellular response to organic cyclic substance // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded 1369277_at NM_022673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022673.1 /DB_XREF=gi:12083608 /GEN=Mecp2 /FEA=FLmRNA /CNT=3 /TID=Rn.9680.1 /TIER=FL /STK=2 /UG=Rn.9680 /LL=29386 /DEF=Rattus norvegicus methyl CpG binding protein 2 (Mecp2), mRNA. /PROD=methyl CpG binding protein 2 /FL=gb:NM_022673.1 gb:M94064.1 NM_022673 methyl CpG binding protein 2 Mecp2 29386 NM_022673 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001662 // behavioral fear response // inferred from electronic annotation /// 0001662 // behavioral fear response // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0001964 // startle response // inferred from electronic annotation /// 0001964 // startle response // not recorded /// 0001976 // neurological system process involved in regulation of systemic arterial blood pressure // inferred from electronic annotation /// 0001976 // neurological system process involved in regulation of systemic arterial blood pressure // not recorded /// 0002087 // regulation of respiratory gaseous exchange by neurological system process // inferred from electronic annotation /// 0002087 // regulation of respiratory gaseous exchange by neurological system process // not recorded /// 0006020 // inositol metabolic process // inferred from electronic annotation /// 0006020 // inositol metabolic process // not recorded /// 0006122 // mitochondrial electron transport, ubiquinol to cytochrome c // inferred from electronic annotation /// 0006122 // mitochondrial electron transport, ubiquinol to cytochrome c // not recorded /// 0006342 // chromatin silencing // inferred from electronic annotation /// 0006342 // chromatin silencing // not recorded /// 0006349 // regulation of gene expression by genetic imprinting // inferred from electronic annotation /// 0006349 // regulation of gene expression by genetic imprinting // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0006541 // glutamine metabolic process // not recorded /// 0006576 // cellular biogenic amine metabolic process // inferred from electronic annotation /// 0006576 // cellular biogenic amine metabolic process // not recorded /// 0006950 // response to stress // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007416 // synapse assembly // not recorded /// 0007416 // synapse assembly // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // not recorded /// 0007612 // learning // inferred from electronic annotation /// 0007612 // learning // not recorded /// 0007613 // memory // not recorded /// 0007613 // memory // inferred from electronic annotation /// 0007616 // long-term memory // inferred from electronic annotation /// 0007616 // long-term memory // not recorded /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0008211 // glucocorticoid metabolic process // inferred from electronic annotation /// 0008211 // glucocorticoid metabolic process // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0008542 // visual learning // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0009405 // pathogenesis // inferred from electronic annotation /// 0009405 // pathogenesis // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0016358 // dendrite development // inferred from electronic annotation /// 0016358 // dendrite development // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016571 // histone methylation // not recorded /// 0016571 // histone methylation // inferred from electronic annotation /// 0016573 // histone acetylation // not recorded /// 0016573 // histone acetylation // inferred from electronic annotation /// 0019230 // proprioception // inferred from electronic annotation /// 0019230 // proprioception // not recorded /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0019233 // sensory perception of pain // not recorded /// 0021549 // cerebellum development // inferred from electronic annotation /// 0021549 // cerebellum development // not recorded /// 0021591 // ventricular system development // inferred from electronic annotation /// 0021591 // ventricular system development // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0031061 // negative regulation of histone methylation // inferred from electronic annotation /// 0031061 // negative regulation of histone methylation // not recorded /// 0031175 // neuron projection development // not recorded /// 0031175 // neuron projection development // inferred from electronic annotation /// 0032048 // cardiolipin metabolic process // inferred from electronic annotation /// 0032048 // cardiolipin metabolic process // not recorded /// 0035067 // negative regulation of histone acetylation // inferred from electronic annotation /// 0035067 // negative regulation of histone acetylation // not recorded /// 0035176 // social behavior // inferred from electronic annotation /// 0035176 // social behavior // not recorded /// 0040029 // regulation of gene expression, epigenetic // not recorded /// 0040029 // regulation of gene expression, epigenetic // inferred from electronic annotation /// 0042551 // neuron maturation // inferred from electronic annotation /// 0042551 // neuron maturation // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0046470 // phosphatidylcholine metabolic process // inferred from electronic annotation /// 0046470 // phosphatidylcholine metabolic process // not recorded /// 0048167 // regulation of synaptic plasticity // not recorded /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation /// 0050432 // catecholamine secretion // inferred from electronic annotation /// 0050432 // catecholamine secretion // not recorded /// 0050884 // neuromuscular process controlling posture // not recorded /// 0050884 // neuromuscular process controlling posture // inferred from electronic annotation /// 0050905 // neuromuscular process // not recorded /// 0050905 // neuromuscular process // inferred from electronic annotation /// 0051965 // positive regulation of synaptogenesis // inferred from electronic annotation /// 0051965 // positive regulation of synaptogenesis // not recorded /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded /// 0060291 // long-term synaptic potentiation // inferred from electronic annotation /// 0060291 // long-term synaptic potentiation // not recorded 0000790 // nuclear chromatin // inferred from direct assay /// 0000792 // heterochromatin // inferred from electronic annotation /// 0000792 // heterochromatin // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0000400 // four-way junction DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003729 // mRNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008327 // methyl-CpG binding // inferred from direct assay /// 0008327 // methyl-CpG binding // not recorded /// 0008327 // methyl-CpG binding // inferred from electronic annotation /// 0010385 // double-stranded methylated DNA binding // inferred from direct assay /// 0010385 // double-stranded methylated DNA binding // not recorded /// 0010385 // double-stranded methylated DNA binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from direct assay /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019904 // protein domain specific binding // not recorded /// 0031490 // chromatin DNA binding // inferred from direct assay /// 0035197 // siRNA binding // inferred from electronic annotation /// 0035197 // siRNA binding // not recorded /// 0045322 // unmethylated CpG binding // inferred from direct assay /// 0047485 // protein N-terminus binding // not recorded 1369278_at NM_031034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031034.1 /DB_XREF=gi:13591952 /GEN=Gna12 /FEA=FLmRNA /CNT=3 /TID=Rn.10497.1 /TIER=FL /STK=2 /UG=Rn.10497 /LL=81663 /DEF=Rattus norvegicus guanine nucleotide binding protein (G protein) alpha 12 (Gna12), mRNA. /PROD=guanine nucleotide binding protein (G protein)alpha 12 /FL=gb:D85760.1 gb:NM_031034.1 NM_031034 guanine nucleotide binding protein, alpha 12 Gna12 81663 NM_031034 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007212 // dopamine receptor signaling pathway // traceable author statement /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0007266 // Rho protein signal transduction // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // not recorded /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // not recorded 0005834 // heterotrimeric G-protein complex // traceable author statement /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031752 // D5 dopamine receptor binding // inferred from physical interaction 1369279_at NM_130819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130819.1 /DB_XREF=gi:18677748 /GEN=Rdhl /FEA=FLmRNA /CNT=3 /TID=Rn.81185.1 /TIER=FL /STK=2 /UG=Rn.81185 /DEF=Rattus norvegicus retinol dehydrogenase homolog (Rdhl), mRNA. /PROD=retinol dehydrogenase homolog /FL=gb:AF337953.1 gb:NM_130819.1 NM_130819 dehydrogenase/reductase (SDR family) member 9 Dhrs9 170635 NM_130819 0008152 // metabolic process // inferred from electronic annotation /// 0008209 // androgen metabolic process // inferred from electronic annotation /// 0008209 // androgen metabolic process // not recorded /// 0042448 // progesterone metabolic process // inferred from electronic annotation /// 0042448 // progesterone metabolic process // not recorded /// 0042573 // retinoic acid metabolic process // non-traceable author statement /// 0042904 // 9-cis-retinoic acid biosynthetic process // not recorded /// 0042904 // 9-cis-retinoic acid biosynthetic process // inferred from sequence or structural similarity /// 0042904 // 9-cis-retinoic acid biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from sequence or structural similarity /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded /// 0030176 // integral to endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004022 // alcohol dehydrogenase (NAD) activity // not recorded /// 0004022 // alcohol dehydrogenase (NAD) activity // inferred from sequence or structural similarity /// 0004022 // alcohol dehydrogenase (NAD) activity // inferred from electronic annotation /// 0004745 // retinol dehydrogenase activity // inferred from mutant phenotype /// 0004745 // retinol dehydrogenase activity // not recorded /// 0004745 // retinol dehydrogenase activity // inferred from sequence or structural similarity /// 0004745 // retinol dehydrogenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0047035 // 3-alpha(17-beta)-hydroxysteroid dehydrogenase (NAD+) activity // not recorded /// 0047035 // 3-alpha(17-beta)-hydroxysteroid dehydrogenase (NAD+) activity // inferred from sequence or structural similarity /// 0047035 // 3-alpha(17-beta)-hydroxysteroid dehydrogenase (NAD+) activity // inferred from electronic annotation 1369280_at NM_053405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053405.1 /DB_XREF=gi:16758135 /GEN=Kcnk9 /FEA=FLmRNA /CNT=3 /TID=Rn.48796.1 /TIER=FL /STK=2 /UG=Rn.48796 /LL=84429 /DEF=Rattus norvegicus potassium channel, subfamily K, member 9 (Task-3) (Kcnk9), mRNA. /PROD=potassium channel, subfamily K, member 9(Task-3) /FL=gb:NM_053405.1 gb:AF391084.1 gb:AF192366.1 NM_053405 potassium channel, subfamily K, member 9 Kcnk9 84429 NM_053405 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0090102 // cochlea development // inferred from expression pattern 0005886 // plasma membrane // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from mutant phenotype /// 0046982 // protein heterodimerization activity // inferred from mutant phenotype 1369281_at NM_057149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057149.1 /DB_XREF=gi:16924011 /GEN=Tnfsf11 /FEA=FLmRNA /CNT=3 /TID=Rn.64517.1 /TIER=FL /STK=2 /UG=Rn.64517 /LL=117516 /DEF=Rattus norvegicus tumor necrosis factor (ligand) superfamily, member 11 (Tnfsf11), mRNA. /PROD=tumor necrosis factor (ligand) superfamily,member 11 /FL=gb:NM_057149.1 gb:AF187319.1 NM_057149 tumor necrosis factor (ligand) superfamily, member 11 Tnfsf11 117516 NM_057149 0001503 // ossification // inferred from electronic annotation /// 0001503 // ossification // not recorded /// 0002548 // monocyte chemotaxis // not recorded /// 0006950 // response to stress // inferred from expression pattern /// 0006955 // immune response // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009314 // response to radiation // inferred from expression pattern /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0010740 // positive regulation of intracellular protein kinase cascade // not recorded /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030316 // osteoclast differentiation // not recorded /// 0030316 // osteoclast differentiation // inferred from electronic annotation /// 0031622 // positive regulation of fever // not recorded /// 0032308 // positive regulation of prostaglandin secretion // not recorded /// 0033209 // tumor necrosis factor-mediated signaling pathway // not recorded /// 0033598 // mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0033598 // mammary gland epithelial cell proliferation // not recorded /// 0034112 // positive regulation of homotypic cell-cell adhesion // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0045453 // bone resorption // not recorded /// 0045453 // bone resorption // inferred from electronic annotation /// 0045670 // regulation of osteoclast differentiation // not recorded /// 0045670 // regulation of osteoclast differentiation // inferred from electronic annotation /// 0045672 // positive regulation of osteoclast differentiation // inferred from mutant phenotype /// 0045672 // positive regulation of osteoclast differentiation // not recorded /// 0045672 // positive regulation of osteoclast differentiation // inferred from electronic annotation /// 0045780 // positive regulation of bone resorption // inferred from mutant phenotype /// 0045780 // positive regulation of bone resorption // not recorded /// 0045780 // positive regulation of bone resorption // inferred from electronic annotation /// 0050870 // positive regulation of T cell activation // not recorded /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded /// 0051466 // positive regulation of corticotropin-releasing hormone secretion // not recorded /// 0051897 // positive regulation of protein kinase B signaling cascade // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded /// 0060749 // mammary gland alveolus development // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0032813 // tumor necrosis factor receptor superfamily binding // not recorded 1369282_at NM_057149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057149.1 /DB_XREF=gi:16924011 /GEN=Tnfsf11 /FEA=FLmRNA /CNT=3 /TID=Rn.64517.1 /TIER=ConsEnd /STK=0 /UG=Rn.64517 /LL=117516 /DEF=Rattus norvegicus tumor necrosis factor (ligand) superfamily, member 11 (Tnfsf11), mRNA. /PROD=tumor necrosis factor (ligand) superfamily,member 11 /FL=gb:NM_057149.1 gb:AF187319.1 NM_057149 tumor necrosis factor (ligand) superfamily, member 11 Tnfsf11 117516 NM_057149 0001503 // ossification // inferred from electronic annotation /// 0001503 // ossification // not recorded /// 0002548 // monocyte chemotaxis // not recorded /// 0006950 // response to stress // inferred from expression pattern /// 0006955 // immune response // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009314 // response to radiation // inferred from expression pattern /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0010740 // positive regulation of intracellular protein kinase cascade // not recorded /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030316 // osteoclast differentiation // not recorded /// 0030316 // osteoclast differentiation // inferred from electronic annotation /// 0031622 // positive regulation of fever // not recorded /// 0032308 // positive regulation of prostaglandin secretion // not recorded /// 0033209 // tumor necrosis factor-mediated signaling pathway // not recorded /// 0033598 // mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0033598 // mammary gland epithelial cell proliferation // not recorded /// 0034112 // positive regulation of homotypic cell-cell adhesion // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0045453 // bone resorption // not recorded /// 0045453 // bone resorption // inferred from electronic annotation /// 0045670 // regulation of osteoclast differentiation // not recorded /// 0045670 // regulation of osteoclast differentiation // inferred from electronic annotation /// 0045672 // positive regulation of osteoclast differentiation // inferred from mutant phenotype /// 0045672 // positive regulation of osteoclast differentiation // not recorded /// 0045672 // positive regulation of osteoclast differentiation // inferred from electronic annotation /// 0045780 // positive regulation of bone resorption // inferred from mutant phenotype /// 0045780 // positive regulation of bone resorption // not recorded /// 0045780 // positive regulation of bone resorption // inferred from electronic annotation /// 0050870 // positive regulation of T cell activation // not recorded /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded /// 0051466 // positive regulation of corticotropin-releasing hormone secretion // not recorded /// 0051897 // positive regulation of protein kinase B signaling cascade // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded /// 0060749 // mammary gland alveolus development // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0032813 // tumor necrosis factor receptor superfamily binding // not recorded 1369283_at NM_013077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013077.1 /DB_XREF=gi:6981685 /GEN=Tub /FEA=FLmRNA /CNT=3 /TID=Rn.30017.1 /TIER=FL /STK=2 /UG=Rn.30017 /LL=25609 /DEF=Rattus norvegicus Tubby (mouse) homolog (Tub), mRNA. /PROD=tubby (mouse) homolog /FL=gb:NM_013077.1 gb:AB011544.1 NM_013077 tubby homolog (mouse) Tub 25609 NM_013077 0006909 // phagocytosis // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007602 // phototransduction // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0009584 // detection of visible light // not recorded /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0050766 // positive regulation of phagocytosis // not recorded /// 0050766 // positive regulation of phagocytosis // inferred from sequence or structural similarity /// 0050896 // response to stimulus // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0008020 // G-protein coupled photoreceptor activity // not recorded 1369284_at NM_022956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022956.1 /DB_XREF=gi:12621135 /GEN=Loc65050 /FEA=FLmRNA /CNT=3 /TID=Rn.30005.1 /TIER=FL /STK=2 /UG=Rn.30005 /LL=65050 /DEF=Rattus norvegicus BarH-class homeodomain transcription factor (Loc65050), mRNA. /PROD=BarH-class homeodomain transcription factor /FL=gb:AB004056.1 gb:NM_022956.1 NM_022956 BarH-like homeobox 2 Barhl2 65050 NM_022956 0001709 // cell fate determination // inferred from electronic annotation /// 0001709 // cell fate determination // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from direct assay /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030516 // regulation of axon extension // inferred from electronic annotation /// 0030516 // regulation of axon extension // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045664 // regulation of neuron differentiation // traceable author statement /// 0045727 // positive regulation of translation // inferred from electronic annotation /// 0045727 // positive regulation of translation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1369285_at NM_031082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031082.1 /DB_XREF=gi:13592024 /GEN=Pggt1b /FEA=FLmRNA /CNT=3 /TID=Rn.10031.1 /TIER=FL /STK=2 /UG=Rn.10031 /LL=81746 /DEF=Rattus norvegicus geranylgeranyltransferase type I (GGTase-I) (Pggt1b), mRNA. /PROD=geranylgeranyltransferase type I (GGTase-I) /FL=gb:NM_031082.1 gb:L24116.1 NM_031082 protein geranylgeranyltransferase type I, beta subunit Pggt1b 81746 NM_031082 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0018344 // protein geranylgeranylation // traceable author statement /// 0034097 // response to cytokine stimulus // inferred from mutant phenotype /// 0045787 // positive regulation of cell cycle // inferred from mutant phenotype /// 0051774 // negative regulation of nitric-oxide synthase 2 biosynthetic process // inferred from mutant phenotype /// 0051789 // response to protein stimulus // inferred from direct assay 0005953 // CAAX-protein geranylgeranyltransferase complex // inferred from direct assay /// 0005953 // CAAX-protein geranylgeranyltransferase complex // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004659 // prenyltransferase activity // inferred from electronic annotation /// 0004662 // CAAX-protein geranylgeranyltransferase activity // inferred from direct assay /// 0004662 // CAAX-protein geranylgeranyltransferase activity // traceable author statement /// 0004662 // CAAX-protein geranylgeranyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008144 // drug binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0019840 // isoprenoid binding // inferred from direct assay /// 0042277 // peptide binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1369286_at NM_012803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012803.1 /DB_XREF=gi:6981411 /GEN=Proc /FEA=FLmRNA /CNT=3 /TID=Rn.10403.1 /TIER=FL /STK=2 /UG=Rn.10403 /LL=25268 /DEF=Rattus norvegicus Protein C (Proc), mRNA. /PROD=protein C /FL=gb:NM_012803.1 NM_012803 protein C Proc 25268 NM_012803 0006508 // proteolysis // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0030195 // negative regulation of blood coagulation // inferred from electronic annotation /// 0030195 // negative regulation of blood coagulation // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0050728 // negative regulation of inflammatory response // traceable author statement /// 0050819 // negative regulation of coagulation // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1369287_at NM_053324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053324.1 /DB_XREF=gi:16758023 /GEN=Sytv /FEA=FLmRNA /CNT=3 /TID=Rn.10194.1 /TIER=FL /STK=2 /UG=Rn.10194 /LL=60564 /DEF=Rattus norvegicus synaptogamin V (Sytv), mRNA. /PROD=synaptogamin V /FL=gb:NM_053324.1 gb:AF375461.1 NM_053324 synaptotagmin IX Syt9 60564 NM_053324 0006810 // transport // inferred from electronic annotation /// 0017158 // regulation of calcium ion-dependent exocytosis // inferred from mutant phenotype /// 0050796 // regulation of insulin secretion // inferred from mutant phenotype 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030667 // secretory granule membrane // inferred from direct assay /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031045 // dense core granule // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1369288_at NM_053624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053624.1 /DB_XREF=gi:16758427 /GEN=Pitx1 /FEA=FLmRNA /CNT=3 /TID=Rn.74248.1 /TIER=FL /STK=2 /UG=Rn.74248 /LL=113983 /DEF=Rattus norvegicus paired-like homeodomain transcription factor 1 (Pitx1), mRNA. /PROD=paired-like homeodomain transcription factor 1 /FL=gb:NM_053624.1 gb:AB047298.1 NM_053624 paired-like homeodomain 1 Pitx1 113983 NM_053624 0001501 // skeletal system development // not recorded /// 0001501 // skeletal system development // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0014707 // branchiomeric skeletal muscle development // inferred from electronic annotation /// 0014707 // branchiomeric skeletal muscle development // not recorded /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0021983 // pituitary gland development // not recorded /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0035137 // hindlimb morphogenesis // not recorded /// 0035137 // hindlimb morphogenesis // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048625 // myoblast cell fate commitment // inferred from electronic annotation /// 0048625 // myoblast cell fate commitment // not recorded /// 0051216 // cartilage development // inferred from electronic annotation /// 0051216 // cartilage development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1369289_at NM_022180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022180.1 /DB_XREF=gi:11559938 /GEN=Hnf4a /FEA=FLmRNA /CNT=3 /TID=Rn.44442.1 /TIER=FL /STK=2 /UG=Rn.44442 /LL=25735 /DEF=Rattus norvegicus Hepatic nuclear factor 4 (alpha transcription factor 4) (Hnf4a), mRNA. /PROD=hepatic nuclear factor 4 (alpha transcriptionfactor 4) /FL=gb:NM_022180.1 gb:D10554.1 NM_022180 hepatocyte nuclear factor 4, alpha Hnf4a 25735 NM_022180 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006591 // ornithine metabolic process // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // not recorded /// 0006637 // acyl-CoA metabolic process // inferred from direct assay /// 0006805 // xenobiotic metabolic process // not recorded /// 0007164 // establishment of tissue polarity // inferred from direct assay /// 0007548 // sex differentiation // inferred from electronic annotation /// 0007548 // sex differentiation // not recorded /// 0007596 // blood coagulation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009749 // response to glucose stimulus // inferred from direct assay /// 0009749 // response to glucose stimulus // not recorded /// 0009749 // response to glucose stimulus // inferred from electronic annotation /// 0010470 // regulation of gastrulation // inferred from electronic annotation /// 0010470 // regulation of gastrulation // not recorded /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0019216 // regulation of lipid metabolic process // not recorded /// 0030154 // cell differentiation // inferred from mutant phenotype /// 0030308 // negative regulation of cell growth // not recorded /// 0032534 // regulation of microvillus assembly // inferred from mutant phenotype /// 0033159 // negative regulation of protein import into nucleus, translocation // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0042524 // negative regulation of tyrosine phosphorylation of Stat5 protein // inferred from direct assay /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042593 // glucose homeostasis // not recorded /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043433 // negative regulation of transcription factor activity // inferred from direct assay /// 0045216 // cell-cell junction organization // inferred from direct assay /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045722 // positive regulation of gluconeogenesis // inferred from mutant phenotype /// 0045723 // positive regulation of fatty acid biosynthetic process // inferred from mutant phenotype /// 0045930 // negative regulation of mitotic cell cycle // inferred from direct assay /// 0045941 // positive regulation of transcription // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0050732 // negative regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050796 // regulation of insulin secretion // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // not recorded /// 0051591 // response to cAMP // inferred from expression pattern /// 0055088 // lipid homeostasis // not recorded /// 0060395 // SMAD protein signal transduction // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded 0000062 // acyl-CoA binding // inferred from physical interaction /// 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0003707 // steroid hormone receptor activity // traceable author statement /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005504 // fatty acid binding // inferred from physical interaction /// 0005504 // fatty acid binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016290 // palmitoyl-CoA hydrolase activity // inferred from direct assay /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0033613 // transcription activator binding // inferred from electronic annotation /// 0033613 // transcription activator binding // not recorded /// 0042803 // protein homodimerization activity // inferred from mutant phenotype /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from mutant phenotype /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070491 // transcription repressor binding // inferred from physical interaction 1369290_at NM_053960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053960.1 /DB_XREF=gi:16758945 /GEN=Cmkbr5 /FEA=FLmRNA /CNT=3 /TID=Rn.10736.1 /TIER=FL /STK=2 /UG=Rn.10736 /LL=117029 /DEF=Rattus norvegicus chemokine (C-C) receptor 5 (Cmkbr5), mRNA. /PROD=chemokine (C-C) receptor 5 /FL=gb:NM_053960.1 NM_053960 chemokine (C-C motif) receptor 5 Ccr5 117029 NM_053960 0002437 // inflammatory response to antigenic stimulus // inferred from expression pattern /// 0006952 // defense response // not recorded /// 0006952 // defense response // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from expression pattern /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0019059 // initiation of viral infection // not recorded /// 0031620 // regulation of fever // inferred from mutant phenotype /// 0031622 // positive regulation of fever // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from mutant phenotype /// 0042742 // defense response to bacterium // inferred from expression pattern /// 0050900 // leukocyte migration // traceable author statement 0005768 // endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003779 // actin binding // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016493 // C-C chemokine receptor activity // inferred from mutant phenotype /// 0016493 // C-C chemokine receptor activity // not recorded /// 0016493 // C-C chemokine receptor activity // traceable author statement /// 0016493 // C-C chemokine receptor activity // inferred from electronic annotation /// 0019957 // C-C chemokine binding // inferred from mutant phenotype 1369291_at NM_030985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030985.1 /DB_XREF=gi:13591865 /GEN=Agtr1a /FEA=FLmRNA /CNT=3 /TID=Rn.9814.1 /TIER=FL /STK=2 /UG=Rn.9814 /LL=24180 /DEF=Rattus norvegicus Angiotensin II receptor, type 1 (AT1A) (Agtr1a), mRNA. /PROD=angiotensin II receptor, type 1 (AT1A) /FL=gb:NM_030985.1 gb:M74054.1 NM_030985 angiotensin II receptor, type 1a Agtr1a 24180 NM_030985 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0001921 // positive regulation of receptor recycling // inferred from direct assay /// 0001991 // regulation of systemic arterial blood pressure by circulatory renin-angiotensin // inferred from electronic annotation /// 0001991 // regulation of systemic arterial blood pressure by circulatory renin-angiotensin // not recorded /// 0002001 // renin secretion into blood stream // inferred from electronic annotation /// 0002001 // renin secretion into blood stream // not recorded /// 0002018 // renin-angiotensin regulation of aldosterone production // inferred from electronic annotation /// 0002018 // renin-angiotensin regulation of aldosterone production // not recorded /// 0002019 // regulation of renal output by angiotensin // inferred from electronic annotation /// 0002019 // regulation of renal output by angiotensin // not recorded /// 0002035 // brain renin-angiotensin system // inferred from electronic annotation /// 0002035 // brain renin-angiotensin system // not recorded /// 0006885 // regulation of pH // inferred from direct assay /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007266 // Rho protein signal transduction // not recorded /// 0008217 // regulation of blood pressure // traceable author statement /// 0010873 // positive regulation of cholesterol esterification // not recorded /// 0019229 // regulation of vasoconstriction // not recorded /// 0019722 // calcium-mediated signaling // not recorded /// 0032270 // positive regulation of cellular protein metabolic process // not recorded /// 0032430 // positive regulation of phospholipase A2 activity // not recorded /// 0042756 // drinking behavior // inferred from electronic annotation /// 0042756 // drinking behavior // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045777 // positive regulation of blood pressure // inferred from electronic annotation /// 0045777 // positive regulation of blood pressure // not recorded /// 0050715 // positive regulation of cytokine secretion // not recorded /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // not recorded /// 0060326 // cell chemotaxis // not recorded /// 0071549 // cellular response to dexamethasone stimulus // inferred from direct assay /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from direct assay /// 0012506 // vesicle membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from mutant phenotype /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0031968 // organelle outer membrane // inferred from direct assay /// 0031983 // vesicle lumen // inferred from direct assay 0001596 // angiotensin type I receptor activity // inferred from direct assay /// 0001596 // angiotensin type I receptor activity // inferred from mutant phenotype /// 0001596 // angiotensin type I receptor activity // not recorded /// 0001596 // angiotensin type I receptor activity // inferred from electronic annotation /// 0001965 // G-protein alpha-subunit binding // inferred from mutant phenotype /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004945 // angiotensin type II receptor activity // inferred from electronic annotation /// 0004945 // angiotensin type II receptor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0010698 // acetyltransferase activator activity // not recorded /// 0017046 // peptide hormone binding // inferred from mutant phenotype /// 0031711 // bradykinin receptor binding // not recorded /// 0043621 // protein self-association // inferred from mutant phenotype /// 0046982 // protein heterodimerization activity // not recorded 1369292_at NM_012851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012851.1 /DB_XREF=gi:6981047 /GEN=Hsd17b1 /FEA=FLmRNA /CNT=3 /TID=Rn.10594.1 /TIER=FL /STK=2 /UG=Rn.10594 /LL=25322 /DEF=Rattus norvegicus Hydroxysteroid dehydrogenase 17 beta, type 1 (Hsd17b1), mRNA. /PROD=hydroxysteroid dehydrogenase 17 beta, type 1 /FL=gb:NM_012851.1 NM_012851 hydroxysteroid (17-beta) dehydrogenase 1 Hsd17b1 25322 NM_012851 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006703 // estrogen biosynthetic process // inferred from electronic annotation /// 0006703 // estrogen biosynthetic process // non-traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004303 // estradiol 17-beta-dehydrogenase activity // inferred from electronic annotation /// 0004303 // estradiol 17-beta-dehydrogenase activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1369293_at NM_053613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053613.1 /DB_XREF=gi:16758409 /GEN=Rtn4r /FEA=FLmRNA /CNT=3 /TID=Rn.45686.1 /TIER=FL /STK=2 /UG=Rn.45686 /LL=113912 /DEF=Rattus norvegicus reticulon 4 receptor (Rtn4r), mRNA. /PROD=reticulon 4 receptor /FL=gb:NM_053613.1 gb:AY028438.1 NM_053613 reticulon 4 receptor Rtn4r 113912 NM_053613 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0050770 // regulation of axonogenesis // not recorded /// 0050771 // negative regulation of axonogenesis // not recorded /// 0050771 // negative regulation of axonogenesis // traceable author statement 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0004872 // receptor activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369294_at NM_030848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030848.1 /DB_XREF=gi:13540657 /GEN=Bst1 /FEA=FLmRNA /CNT=3 /TID=Rn.10728.1 /TIER=FL /STK=2 /UG=Rn.10728 /LL=81506 /DEF=Rattus norvegicus bone marrow stromal cell antigen 1 (Bst1), mRNA. /PROD=bone marrow stromal cell antigen 1 /FL=gb:NM_030848.1 gb:D49955.1 NM_030848 bone marrow stromal cell antigen 1 Bst1 81506 NM_030848 0008152 // metabolic process // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003953 // NAD+ nucleosidase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1369295_at NM_133284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133284.1 /DB_XREF=gi:18959215 /GEN=Pgc /FEA=FLmRNA /CNT=3 /TID=Rn.9735.1 /TIER=FL /STK=2 /UG=Rn.9735 /LL=24864 /DEF=Rattus norvegicus progastricsin (pepsinogen C) (Pgc), mRNA. /PROD=progastricsin (pepsinogen C) /FL=gb:NM_133284.1 NM_133284 progastricsin (pepsinogen C) Pgc 24864 NM_133284 0006508 // proteolysis // inferred from electronic annotation /// 0007586 // digestion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1369296_at NM_031732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031732.1 /DB_XREF=gi:13929029 /GEN=Sult1a2 /FEA=FLmRNA /CNT=3 /TID=Rn.9937.1 /TIER=FL /STK=2 /UG=Rn.9937 /LL=65185 /DEF=Rattus norvegicus sulfotransferase family 1A, phenol-preferring, member 2 (Sult1a2), mRNA. /PROD=sulfotransferase, phenol preferring 2 /FL=gb:NM_031732.1 gb:L22339.1 NM_031732 sulfotransferase family, cytosolic, 1C, member 3 Sult1c3 65185 NM_031732 0006790 // sulfur compound metabolic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // non-traceable author statement 0004027 // alcohol sulfotransferase activity // inferred from electronic annotation /// 0004027 // alcohol sulfotransferase activity // not recorded /// 0004062 // aryl sulfotransferase activity // inferred from direct assay /// 0004062 // aryl sulfotransferase activity // not recorded /// 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1369297_at NM_057116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057116.1 /DB_XREF=gi:16923961 /GEN=Ppp2r2c /FEA=FLmRNA /CNT=3 /TID=Rn.54550.1 /TIER=FL /STK=2 /UG=Rn.54550 /LL=117256 /DEF=Rattus norvegicus protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform (Ppp2r2c), mRNA. /PROD=protein phosphatase 2 (formerly 2A), regulatorysubunit B (PR 52), gamma isoform /FL=gb:D38261.1 gb:NM_057116.1 NM_057116 protein phosphatase 2 (formerly 2A), regulatory subunit B, gamma isoform Ppp2r2c 117256 NM_057116 0007165 // signal transduction // inferred from electronic annotation 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation 0008601 // protein phosphatase type 2A regulator activity // inferred from electronic annotation 1369298_at NM_022181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022181.1 /DB_XREF=gi:11559940 /GEN=Aqp6 /FEA=FLmRNA /CNT=3 /TID=Rn.48667.1 /TIER=FL /STK=2 /UG=Rn.48667 /LL=29170 /DEF=Rattus norvegicus aquaporin 6 (Aqp6), mRNA. /PROD=aquaporin 6 /FL=gb:NM_022181.1 gb:AF083879.1 NM_022181 aquaporin 6, kidney specific Aqp6 29170 NM_022181 0006810 // transport // inferred from electronic annotation /// 0015706 // nitrate transport // inferred from mutant phenotype /// 0042476 // odontogenesis // inferred from electronic annotation /// 0042476 // odontogenesis // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0015112 // nitrate transmembrane transporter activity // inferred from mutant phenotype 1369299_at NM_053321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053321.1 /DB_XREF=gi:16758017 /GEN=Ptafr /FEA=FLmRNA /CNT=3 /TID=Rn.10137.1 /TIER=FL /STK=2 /UG=Rn.10137 /LL=58949 /DEF=Rattus norvegicus platelet-activating factor receptor (Ptafr), mRNA. /PROD=platelet-activating factor receptor /FL=gb:U04740.1 gb:NM_053321.1 NM_053321 platelet-activating factor receptor Ptafr 58949 NM_053321 0001816 // cytokine production // inferred from electronic annotation /// 0001816 // cytokine production // not recorded /// 0002221 // pattern recognition receptor signaling pathway // not recorded /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0031663 // lipopolysaccharide-mediated signaling pathway // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0032959 // inositol trisphosphate biosynthetic process // inferred from electronic annotation /// 0032959 // inositol trisphosphate biosynthetic process // not recorded /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001530 // lipopolysaccharide binding // not recorded /// 0001530 // lipopolysaccharide binding // inferred from electronic annotation /// 0001875 // lipopolysaccharide receptor activity // inferred from electronic annotation /// 0001875 // lipopolysaccharide receptor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004992 // platelet activating factor receptor activity // inferred from electronic annotation /// 0004992 // platelet activating factor receptor activity // not recorded /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005543 // phospholipid binding // not recorded 1369300_at NM_057199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057199.1 /DB_XREF=gi:17105353 /GEN=Ly94 /FEA=FLmRNA /CNT=3 /TID=Rn.30049.1 /TIER=FL /STK=2 /UG=Rn.30049 /LL=117547 /DEF=Rattus norvegicus lymphocyte antigen 94 (mouse) homolog (activating NK-receptor; NK-p46) (Ly94), mRNA. /PROD=lymphocyte antigen 94 (mouse) homolog(activating NK-receptor; NK-p46) /FL=gb:NM_057199.1 gb:AF082533.1 NM_057199 natural cytotoxicity triggering receptor 1 Ncr1 117547 NM_057199 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1369301_at NM_031349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031349.1 /DB_XREF=gi:13786191 /GEN=Agtrl1 /FEA=FLmRNA /CNT=3 /TID=Rn.53980.1 /TIER=FL /STK=2 /UG=Rn.53980 /LL=83518 /DEF=Rattus norvegicus angiotensin receptor-like 1 (Agtrl1), mRNA. /PROD=angiotensin receptor-like 1 /FL=gb:NM_031349.1 gb:AB033170.1 gb:AF184883.1 NM_031349 apelin receptor Aplnr 83518 NM_031349 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // traceable author statement /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0050878 // regulation of body fluid levels // inferred from mutant phenotype 0005634 // nucleus // inferred from mutant phenotype /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from mutant phenotype 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0042277 // peptide binding // traceable author statement 1369302_at NM_133573 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133573.1 /DB_XREF=gi:19424261 /GEN=Gpr30 /FEA=FLmRNA /CNT=3 /TID=Rn.9806.1 /TIER=FL /STK=2 /UG=Rn.9806 /LL=171104 /DEF=Rattus norvegicus G protein-coupled receptor 30 (Gpr30), mRNA. /PROD=G protein-coupled receptor 30 /FL=gb:NM_133573.1 gb:U92802.1 NM_133573 G protein-coupled estrogen receptor 1 Gper 171104 NM_133573 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1369303_at NM_031019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031019.1 /DB_XREF=gi:13591919 /GEN=Crh /FEA=FLmRNA /CNT=3 /TID=Rn.10349.1 /TIER=FL /STK=2 /UG=Rn.10349 /LL=81648 /DEF=Rattus norvegicus corticotropin releasing hormone (Crh), mRNA. /PROD=corticotropin releasing hormone /FL=gb:NM_031019.1 NM_031019 corticotropin releasing hormone Crh 81648 NM_031019 0006704 // glucocorticoid biosynthetic process // inferred from electronic annotation /// 0006704 // glucocorticoid biosynthetic process // not recorded /// 0006950 // response to stress // inferred from direct assay /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0007616 // long-term memory // inferred from direct assay /// 0007631 // feeding behavior // inferred from mutant phenotype /// 0008628 // induction of apoptosis by hormones // inferred from direct assay /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030325 // adrenal gland development // inferred from electronic annotation /// 0030325 // adrenal gland development // not recorded /// 0043526 // neuroprotection // inferred from direct assay /// 0051464 // positive regulation of cortisol secretion // inferred from electronic annotation /// 0051464 // positive regulation of cortisol secretion // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // non-traceable author statement /// 0005615 // extracellular space // traceable author statement 0005102 // receptor binding // inferred from direct assay /// 0005179 // hormone activity // inferred from electronic annotation /// 0017045 // adrenocorticotropin-releasing hormone activity // inferred from direct assay /// 0051430 // corticotropin-releasing hormone receptor 1 binding // inferred from direct assay /// 0051431 // corticotropin-releasing hormone receptor 2 binding // inferred from direct assay 1369304_at NM_017220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017220.1 /DB_XREF=gi:8394114 /GEN=Pts /FEA=FLmRNA /CNT=3 /TID=Rn.11125.1 /TIER=FL /STK=2 /UG=Rn.11125 /LL=29498 /DEF=Rattus norvegicus 6-pyruvoyl-tetrahydropterin synthase (Pts), mRNA. /PROD=6-pyruvoyl-tetrahydropterin synthase /FL=gb:M77850.1 gb:NM_017220.1 NM_017220 6-pyruvoyl-tetrahydropterin synthase Pts 29498 NM_017220 0006729 // tetrahydrobiopterin biosynthetic process // not recorded /// 0006729 // tetrahydrobiopterin biosynthetic process // traceable author statement /// 0006729 // tetrahydrobiopterin biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003874 // 6-pyruvoyltetrahydropterin synthase activity // inferred from direct assay /// 0003874 // 6-pyruvoyltetrahydropterin synthase activity // not recorded /// 0003874 // 6-pyruvoyltetrahydropterin synthase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1369305_at NM_134411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134411.1 /DB_XREF=gi:19705544 /GEN=Grab /FEA=FLmRNA /CNT=3 /TID=Rn.67075.1 /TIER=FL /STK=2 /UG=Rn.67075 /LL=171452 /DEF=Rattus norvegicus Grab protein (Grab), mRNA. /PROD=Grab protein /FL=gb:AY026049.1 gb:NM_134411.1 NM_134411 RAB3A interacting protein (rabin3)-like 1 Rab3il1 171452 NM_134411 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0017112 // Rab guanyl-nucleotide exchange factor activity // inferred from direct assay 1369306_at NM_012745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012745.1 /DB_XREF=gi:6981135 /GEN=Klrd1 /FEA=FLmRNA /CNT=3 /TID=Rn.6025.1 /TIER=FL /STK=2 /UG=Rn.6025 /LL=25110 /DEF=Rattus norvegicus CD94 antigen (located within the rat natural killer gene complex) (Klrd1), mRNA. /PROD=CD94 antigen (located within the rat naturalkiller gene complex) /FL=gb:NM_012745.1 gb:AF009133.1 NM_012745 killer cell lectin-like receptor, subfamily D, member 1 Klrd1 25110 NM_012745 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1369307_at NM_133403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133403.1 /DB_XREF=gi:19173763 /GEN=Ep300 /FEA=FLmRNA /CNT=3 /TID=Rn.48331.1 /TIER=FL /STK=2 /UG=Rn.48331 /DEF=Rattus norvegicus E1A binding protein p300 (Ep300), mRNA. /PROD=E1A binding protein p300 /FL=gb:AB066220.1 gb:NM_133403.1 NM_133403 E1A binding protein p300 Ep300 170915 XM_001076610 /// XM_576312 0001666 // response to hypoxia // inferred from expression pattern /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001756 // somitogenesis // not recorded /// 0001889 // liver development // inferred from expression pattern /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0009749 // response to glucose stimulus // inferred from mutant phenotype /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0010560 // positive regulation of glycoprotein biosynthetic process // inferred from mutant phenotype /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016573 // histone acetylation // inferred from electronic annotation /// 0018076 // N-terminal peptidyl-lysine acetylation // inferred from electronic annotation /// 0018076 // N-terminal peptidyl-lysine acetylation // not recorded /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0031324 // negative regulation of cellular metabolic process // inferred from mutant phenotype /// 0031325 // positive regulation of cellular metabolic process // inferred from mutant phenotype /// 0032025 // response to cobalt ion // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032967 // positive regulation of collagen biosynthetic process // inferred from mutant phenotype /// 0033160 // positive regulation of protein import into nucleus, translocation // inferred from mutant phenotype /// 0042493 // response to drug // inferred from mutant phenotype /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043388 // positive regulation of DNA binding // inferred from mutant phenotype /// 0043491 // protein kinase B signaling cascade // inferred from direct assay /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0043967 // histone H4 acetylation // inferred from electronic annotation /// 0043967 // histone H4 acetylation // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from expression pattern /// 0045727 // positive regulation of translation // inferred from mutant phenotype /// 0045773 // positive regulation of axon extension // inferred from mutant phenotype /// 0045793 // positive regulation of cell size // inferred from mutant phenotype /// 0045862 // positive regulation of proteolysis // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048565 // digestive tract development // inferred from expression pattern /// 0050714 // positive regulation of protein secretion // inferred from mutant phenotype /// 0051091 // positive regulation of transcription factor activity // inferred from electronic annotation /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from mutant phenotype /// 0051592 // response to calcium ion // inferred from mutant phenotype /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0060177 // regulation of angiotensin metabolic process // inferred from direct assay /// 0060298 // positive regulation of sarcomere organization // inferred from mutant phenotype /// 0065004 // protein-DNA complex assembly // inferred from direct assay /// 0070301 // cellular response to hydrogen peroxide // inferred from expression pattern /// 0070542 // response to fatty acid // inferred from expression pattern 0000123 // histone acetyltransferase complex // inferred from electronic annotation /// 0000123 // histone acetyltransferase complex // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred by curator /// 0005667 // transcription factor complex // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0032993 // protein-DNA complex // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003712 // transcription cofactor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0003823 // antigen binding // inferred from direct assay /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from mutant phenotype /// 0004402 // histone acetyltransferase activity // not recorded /// 0004468 // lysine N-acetyltransferase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0008134 // transcription factor binding // inferred from direct assay /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from direct assay /// 0016407 // acetyltransferase activity // inferred from electronic annotation /// 0016407 // acetyltransferase activity // not recorded /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from physical interaction /// 0035259 // glucocorticoid receptor binding // inferred from direct assay /// 0042975 // peroxisome proliferator activated receptor binding // inferred from direct assay /// 0043425 // bHLH transcription factor binding // inferred from physical interaction /// 0046332 // SMAD binding // inferred from physical interaction /// 0051019 // mitogen-activated protein kinase binding // inferred from physical interaction /// 0051059 // NF-kappaB binding // inferred from physical interaction 1369308_at NM_031124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031124.1 /DB_XREF=gi:13592096 /GEN=Stx3a /FEA=FLmRNA /CNT=3 /TID=Rn.10951.1 /TIER=FL /STK=2 /UG=Rn.10951 /LL=81802 /DEF=Rattus norvegicus syntaxin 3 (Stx3a), mRNA. /PROD=syntaxin 3 /FL=gb:L20820.1 gb:NM_031124.1 NM_031124 syntaxin 3 Stx3 81802 NM_031124 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0006887 // exocytosis // not recorded /// 0006944 // cellular membrane fusion // inferred from direct assay /// 0016081 // synaptic vesicle docking involved in exocytosis // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // traceable author statement /// 0031175 // neuron projection development // inferred from direct assay /// 0034599 // cellular response to oxidative stress // inferred from electronic annotation /// 0034599 // cellular response to oxidative stress // not recorded /// 0046907 // intracellular transport // traceable author statement 0001950 // plasma membrane enriched fraction // inferred from electronic annotation /// 0001950 // plasma membrane enriched fraction // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0030426 // growth cone // inferred from direct assay /// 0031201 // SNARE complex // inferred from direct assay /// 0042581 // specific granule // inferred from electronic annotation /// 0042581 // specific granule // not recorded /// 0042582 // azurophil granule // inferred from electronic annotation /// 0042582 // azurophil granule // not recorded /// 0043005 // neuron projection // inferred from direct assay 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0050544 // arachidonic acid binding // inferred from direct assay 1369309_a_at BG671061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671061 /DB_XREF=gi:13893160 /DB_XREF=DRNBLA12 /CLONE=DRNBLA12 /FEA=mRNA /CNT=2 /TID=Rn.1920.3 /TIER=ConsEnd /STK=0 /UG=Rn.1920 /LL=24806 /UG_GENE=Tac1 /UG_TITLE=Tachykinin (substance P, neurokinin A, neuropeptide K, neuropeptide gamma) BG671061 tachykinin 1 Tac1 24806 NM_001124768 /// NM_001124769 /// NM_001124770 /// NM_012666 0002675 // positive regulation of acute inflammatory response // inferred from direct assay /// 0003079 // positive regulation of natriuresis // inferred from direct assay /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007217 // tachykinin receptor signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007616 // long-term memory // inferred from direct assay /// 0008217 // regulation of blood pressure // inferred from direct assay /// 0008306 // associative learning // inferred from direct assay /// 0009725 // response to hormone stimulus // inferred from mutant phenotype /// 0010459 // negative regulation of heart rate // inferred from direct assay /// 0010634 // positive regulation of epithelial cell migration // inferred from direct assay /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0019233 // sensory perception of pain // not recorded /// 0032224 // positive regulation of synaptic transmission, cholinergic // inferred from direct assay /// 0032230 // positive regulation of synaptic transmission, GABAergic // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0043278 // response to morphine // inferred from expression pattern /// 0045760 // positive regulation of action potential // inferred from direct assay /// 0045778 // positive regulation of ossification // inferred from direct assay /// 0048265 // response to pain // inferred from electronic annotation /// 0048265 // response to pain // not recorded /// 0050671 // positive regulation of lymphocyte proliferation // inferred from mutant phenotype /// 0051496 // positive regulation of stress fiber assembly // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded 0031835 // substance P receptor binding // inferred from direct assay 1369310_at NM_022300 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022300.1 /DB_XREF=gi:11560134 /GEN=Basp1 /FEA=FLmRNA /CNT=3 /TID=Rn.37779.1 /TIER=FL /STK=2 /UG=Rn.37779 /LL=64160 /DEF=Rattus norvegicus brain acidic membrane protein (Basp1), mRNA. /PROD=brain acidic membrane protein /FL=gb:D14441.1 gb:NM_022300.1 NM_022300 brain abundant, membrane attached signal protein 1 Basp1 64160 NM_022300 0032582 // negative regulation of gene-specific transcription // not recorded /// 0032582 // negative regulation of gene-specific transcription // inferred from sequence or structural similarity /// 0072112 // glomerular visceral epithelial cell differentiation // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded /// 0016607 // nuclear speck // inferred from sequence or structural similarity /// 0016607 // nuclear speck // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0003714 // transcription corepressor activity // not recorded /// 0003714 // transcription corepressor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from sequence or structural similarity /// 0010843 // promoter binding // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // not recorded /// 0016566 // specific transcriptional repressor activity // inferred from sequence or structural similarity /// 0019904 // protein domain specific binding // not recorded 1369311_at NM_012877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012877.1 /DB_XREF=gi:6981507 /GEN=Scn2b /FEA=FLmRNA /CNT=3 /TID=Rn.10150.1 /TIER=FL /STK=2 /UG=Rn.10150 /LL=25349 /DEF=Rattus norvegicus Sodium channel beta 2 (Scn2b), mRNA. /PROD=sodium channel beta 2 /FL=gb:U37026.1 gb:NM_012877.1 NM_012877 sodium channel, voltage-gated, type II, beta Scn2b 25349 NM_012877 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0007399 // nervous system development // inferred from expression pattern /// 0046684 // response to pyrethroid // inferred from direct assay 0001518 // voltage-gated sodium channel complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005248 // voltage-gated sodium channel activity // inferred from direct assay /// 0005272 // sodium channel activity // inferred from electronic annotation 1369312_a_at U77583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U77583 /DB_XREF=gi:1679789 /FEA=DNA /CNT=1 /TID=Rn.12208.2 /TIER=ConsEnd /STK=0 /UG=Rn.12208 /LL=113927 /UG_GENE=Csnk1a1 /UG_TITLE=casein kinase 1, alpha 1 /DEF=Rattus norvegicus casein kinase I alpha L (CKIaL) mRNA, complete cds U77583 casein kinase 1, alpha 1 Csnk1a1 113927 NM_053615 0000902 // cell morphogenesis // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0001948 // glycoprotein binding // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0051219 // phosphoprotein binding // inferred from direct assay 1369313_at NM_031677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031677.1 /DB_XREF=gi:13928939 /GEN=Fhl2 /FEA=FLmRNA /CNT=3 /TID=Rn.3849.1 /TIER=FL /STK=2 /UG=Rn.3849 /LL=63839 /DEF=Rattus norvegicus four and a half LIM domains 2 (Fhl2), mRNA. /PROD=four and a half LIM domains 2 /FL=gb:NM_031677.1 gb:AB008571.1 NM_031677 four and a half LIM domains 2 Fhl2 63839 NM_031677 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0009725 // response to hormone stimulus // inferred from electronic annotation /// 0009725 // response to hormone stimulus // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0055014 // atrial cardiac muscle cell development // inferred from electronic annotation /// 0055014 // atrial cardiac muscle cell development // not recorded /// 0055015 // ventricular cardiac muscle cell development // inferred from electronic annotation /// 0055015 // ventricular cardiac muscle cell development // not recorded /// 0060347 // heart trabecula formation // inferred from electronic annotation /// 0060347 // heart trabecula formation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0030018 // Z disc // inferred from direct assay /// 0031430 // M band // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1369314_at NM_022211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022211.1 /DB_XREF=gi:11559989 /GEN=Fgf5 /FEA=FLmRNA /CNT=3 /TID=Rn.44445.1 /TIER=FL /STK=2 /UG=Rn.44445 /LL=60662 /DEF=Rattus norvegicus fibroblast growth factor FGF-5 (Fgf5), mRNA. /PROD=fibroblast growth factor FGF-5 /FL=gb:D64086.1 gb:D64085.1 gb:NM_022211.1 NM_022211 fibroblast growth factor 5 Fgf5 60662 NM_022211 0008283 // cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0010001 // glial cell differentiation // inferred from electronic annotation /// 0010001 // glial cell differentiation // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded 0005104 // fibroblast growth factor receptor binding // inferred from electronic annotation /// 0005104 // fibroblast growth factor receptor binding // not recorded /// 0005163 // nerve growth factor receptor binding // traceable author statement /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // inferred from electronic annotation 1369315_at NM_053390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053390.1 /DB_XREF=gi:16758119 /GEN=Il12a /FEA=FLmRNA /CNT=3 /TID=Rn.48723.1 /TIER=FL /STK=2 /UG=Rn.48723 /LL=84405 /DEF=Rattus norvegicus interleukin 12 p35 subunit (Il12a), mRNA. /PROD=interleukin 12 p35 subunit /FL=gb:NM_053390.1 gb:AF177031.1 NM_053390 interleukin 12a Il12a 84405 NM_053390 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0001916 // positive regulation of T cell mediated cytotoxicity // not recorded /// 0002860 // positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target // inferred from electronic annotation /// 0002860 // positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0009615 // response to virus // inferred from electronic annotation /// 0009615 // response to virus // not recorded /// 0010224 // response to UV-B // inferred from electronic annotation /// 0010224 // response to UV-B // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0032729 // positive regulation of interferon-gamma production // inferred from electronic annotation /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0032816 // positive regulation of natural killer cell activation // inferred from electronic annotation /// 0032816 // positive regulation of natural killer cell activation // not recorded /// 0034393 // positive regulation of smooth muscle cell apoptosis // inferred from electronic annotation /// 0034393 // positive regulation of smooth muscle cell apoptosis // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0042520 // positive regulation of tyrosine phosphorylation of Stat4 protein // inferred from electronic annotation /// 0042520 // positive regulation of tyrosine phosphorylation of Stat4 protein // not recorded /// 0042832 // defense response to protozoan // inferred from electronic annotation /// 0042832 // defense response to protozoan // not recorded /// 0045785 // positive regulation of cell adhesion // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // not recorded /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // not recorded /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // inferred from electronic annotation /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048662 // negative regulation of smooth muscle cell proliferation // not recorded /// 0050671 // positive regulation of lymphocyte proliferation // not recorded /// 0050671 // positive regulation of lymphocyte proliferation // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0043514 // interleukin-12 complex // inferred from electronic annotation /// 0043514 // interleukin-12 complex // not recorded 0005125 // cytokine activity // inferred from direct assay /// 0005125 // cytokine activity // not recorded /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005143 // interleukin-12 receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0042163 // interleukin-12 beta subunit binding // inferred from electronic annotation /// 0042163 // interleukin-12 beta subunit binding // not recorded /// 0045513 // interleukin-27 binding // inferred from electronic annotation /// 0045513 // interleukin-27 binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1369316_s_at NM_053810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053810.1 /DB_XREF=gi:16758653 /GEN=Snap29 /FEA=FLmRNA /CNT=3 /TID=Rn.30053.1 /TIER=FL /STK=2 /UG=Rn.30053 /LL=116500 /DEF=Rattus norvegicus synaptosomal-associated protein, 29kD (Snap29), mRNA. /PROD=synaptosomal-associated protein, 29kD /FL=gb:NM_053810.1 gb:AF260577.1 NM_053810 synaptosomal-associated protein 29 Snap29 116500 NM_053810 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 1369317_at NM_024136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024136.1 /DB_XREF=gi:13162311 /GEN=Erabp /FEA=FLmRNA /CNT=3 /TID=Rn.10362.1 /TIER=FL /STK=2 /UG=Rn.10362 /LL=29552 /DEF=Rattus norvegicus epididymal retinoic acid-binding protein (Erabp), mRNA. /PROD=epididymal retinoic acid-binding protein /FL=gb:NM_024136.1 gb:M12790.1 NM_024136 lipocalin 5 Lcn5 29552 NM_024136 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1369318_at NM_021774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021774.1 /DB_XREF=gi:11120729 /GEN=Fhit /FEA=FLmRNA /CNT=3 /TID=Rn.45598.1 /TIER=FL /STK=2 /UG=Rn.45598 /LL=60398 /DEF=Rattus norvegicus fragile histidine triad protein (Fhit), mRNA. /PROD=fragile histidine triad protein /FL=gb:NM_021774.1 gb:AF170064.1 NM_021774 fragile histidine triad gene Fhit 60398 NM_021774 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded /// 0015964 // diadenosine triphosphate catabolic process // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016151 // nickel ion binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // not recorded /// 0047710 // bis(5'-adenosyl)-triphosphatase activity // inferred from direct assay /// 0047710 // bis(5'-adenosyl)-triphosphatase activity // not recorded /// 0047710 // bis(5'-adenosyl)-triphosphatase activity // inferred from electronic annotation 1369319_at NM_023972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023972.1 /DB_XREF=gi:13027425 /GEN=Eaac1 /FEA=FLmRNA /CNT=3 /TID=Rn.64512.1 /TIER=FL /STK=2 /UG=Rn.64512 /LL=66028 /DEF=Rattus norvegicus glutamate transporter EAAC1 interacting protein (Eaac1), mRNA. /PROD=glutamate transporter EAAC1 interacting protein /FL=gb:AF240182.1 gb:NM_023972.1 NM_023972 ADP-ribosylation-like factor 6 interacting protein 5 Arl6ip5 66028 NM_023972 0015813 // L-glutamate transport // inferred from electronic annotation /// 0015813 // L-glutamate transport // not recorded /// 0051051 // negative regulation of transport // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from direct assay 1369320_at NM_030852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030852.1 /DB_XREF=gi:13540666 /GEN=Cdrap /FEA=FLmRNA /CNT=3 /TID=Rn.10660.1 /TIER=FL /STK=2 /UG=Rn.10660 /LL=81510 /DEF=Rattus norvegicus melanoma inhibitory activitycondrocyte-derived retinoic acid sensitive protein homolog (MIACD-RAP) (Cdrap), mRNA. /PROD=melanoma inhibitory activitycondrocyte-derivedretinoic acid sensitive protein homolog (MIACD-RAP) /FL=gb:NM_030852.1 gb:U67884.1 NM_030852 melanoma inhibitory activity Mia 81510 NM_030852 0007160 // cell-matrix adhesion // not recorded /// 0030198 // extracellular matrix organization // not recorded 0005576 // extracellular region // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation 1369321_s_at NM_012840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012840.1 /DB_XREF=gi:6978726 /GEN=Cyct /FEA=FLmRNA /CNT=3 /TID=Rn.10889.1 /TIER=FL /STK=2 /UG=Rn.10889 /LL=25310 /DEF=Rattus norvegicus Cytochrome C, testis specific (Cyct), mRNA. /PROD=cytochrome C, testis specific /FL=gb:NM_012840.1 NM_012840 cytochrome c, testis /// phosphodiesterase 11A Cyct /// Pde11a 140928 /// 25310 NM_001127480 /// NM_001127481 /// NM_012840 /// NM_080893 0006198 // cAMP catabolic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0042743 // hydrogen peroxide metabolic process // not recorded /// 0046069 // cGMP catabolic process // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0043204 // perikaryon // inferred from direct assay /// 0070469 // respiratory chain // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004112 // cyclic-nucleotide phosphodiesterase activity // inferred from direct assay /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0020037 // heme binding // not recorded /// 0030552 // cAMP binding // inferred from direct assay /// 0030553 // cGMP binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047555 // 3',5'-cyclic-GMP phosphodiesterase activity // inferred from electronic annotation 1369322_at NM_133603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133603.1 /DB_XREF=gi:19424313 /GEN=Kcne2 /FEA=FLmRNA /CNT=3 /TID=Rn.48691.1 /TIER=FL /STK=2 /UG=Rn.48691 /LL=171138 /DEF=Rattus norvegicus potassium voltage-gated channel, Isk-related family, member 2 (Kcne2), mRNA. /PROD=potassium voltage-gated channel, Isk-relatedfamily, member 2 /FL=gb:AF071003.1 gb:NM_133603.1 NM_133603 potassium voltage-gated channel, Isk-related subfamily, gene 2 Kcne2 171138 NM_133603 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0008076 // voltage-gated potassium channel complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from direct assay /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // traceable author statement /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0015459 // potassium channel regulator activity // inferred from direct assay 1369323_at NM_020099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020099.1 /DB_XREF=gi:9910467 /GEN=Obrgrp /FEA=FLmRNA /CNT=3 /TID=Rn.53922.1 /TIER=FL /STK=2 /UG=Rn.53922 /LL=56766 /DEF=Rattus norvegicus OB-receptor gene related protein (OB-RGRP) (Obrgrp), mRNA. /PROD=OB-receptor gene related protein (OB-RGRP) /FL=gb:NM_020099.1 gb:AF139209.1 NM_020099 leptin receptor overlapping transcript Leprot 56766 NM_020099 0000139 // Golgi membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1369324_at NM_133291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133291.1 /DB_XREF=gi:18959225 /GEN=Sval2 /FEA=FLmRNA /CNT=3 /TID=Rn.74250.1 /TIER=FL /STK=2 /UG=Rn.74250 /LL=84605 /DEF=Rattus norvegicus seminal vesicle antigen-like 2 (Sval2), mRNA. /PROD=seminal vesicle antigen-like 2 /FL=gb:NM_133291.1 gb:AB051831.1 NM_133291 seminal vesicle antigen-like 2 Sval2 84605 NM_133291 0005576 // extracellular region // inferred from electronic annotation 1369325_at NM_053518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053518.1 /DB_XREF=gi:16758279 /GEN=Lyst /FEA=FLmRNA /CNT=2 /TID=Rn.44274.1 /TIER=FL /STK=2 /UG=Rn.44274 /LL=85419 /DEF=Rattus norvegicus lysosomal trafficking regulator (Lyst), mRNA. /PROD=lysosomal trafficking regulator /FL=gb:NM_053518.1 gb:AB020019.1 NM_053518 lysosomal trafficking regulator Lyst 85419 NM_053518 0002446 // neutrophil mediated immunity // not recorded /// 0002456 // T cell mediated immunity // not recorded /// 0006644 // phospholipid metabolic process // not recorded /// 0007017 // microtubule-based process // not recorded /// 0007040 // lysosome organization // not recorded /// 0007596 // blood coagulation // not recorded /// 0030595 // leukocyte chemotaxis // not recorded /// 0032438 // melanosome organization // not recorded /// 0032510 // endosome to lysosome transport via multivesicular body sorting pathway // not recorded /// 0032816 // positive regulation of natural killer cell activation // not recorded /// 0033299 // secretion of lysosomal enzymes // not recorded /// 0033364 // mast cell secretory granule organization // not recorded /// 0042267 // natural killer cell mediated cytotoxicity // not recorded /// 0042493 // response to drug // not recorded /// 0042742 // defense response to bacterium // not recorded /// 0042832 // defense response to protozoan // not recorded /// 0043473 // pigmentation // inferred from mutant phenotype /// 0043473 // pigmentation // not recorded /// 0048753 // pigment granule organization // not recorded /// 0051607 // defense response to virus // not recorded /// 0055091 // phospholipid homeostasis // not recorded 0005829 // cytosol // not recorded /// 0015630 // microtubule cytoskeleton // not recorded 0005515 // protein binding // not recorded 1369326_at NM_022618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022618.1 /DB_XREF=gi:12018299 /GEN=Akap6 /FEA=FLmRNA /CNT=2 /TID=Rn.48703.1 /TIER=FL /STK=2 /UG=Rn.48703 /LL=64553 /DEF=Rattus norvegicus A-kinase anchor protein (Akap6), mRNA. /PROD=A-kinase anchor protein /FL=gb:NM_022618.1 gb:AF139518.1 NM_022618 A kinase (PRKA) anchor protein 6 Akap6 64553 NM_022618 0010738 // regulation of protein kinase A signaling cascade // inferred from mutant phenotype /// 0032514 // positive regulation of protein phosphatase type 2B activity // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay /// 0005635 // nuclear envelope // not recorded /// 0005640 // nuclear outer membrane // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // not recorded /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0034704 // calcium channel complex // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0019899 // enzyme binding // inferred from physical interaction /// 0032947 // protein complex scaffold // inferred from direct assay /// 0032947 // protein complex scaffold // inferred from mutant phenotype /// 0034237 // protein kinase A regulatory subunit binding // inferred from direct assay /// 0034237 // protein kinase A regulatory subunit binding // inferred from mutant phenotype /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0051018 // protein kinase A binding // inferred from direct assay 1369327_at NM_022940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022940.1 /DB_XREF=gi:12621105 /GEN=Papin /FEA=FLmRNA /CNT=2 /TID=Rn.48728.1 /TIER=FL /STK=2 /UG=Rn.48728 /LL=65034 /DEF=Rattus norvegicus PAPIN (Papin), mRNA. /PROD=PAPIN /FL=gb:NM_022940.1 gb:AF169411.1 NM_022940 PDZ domain containing 2 Pdzd2 65034 NM_022940 0007155 // cell adhesion // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // traceable author statement 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from direct assay /// 0030054 // cell junction // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1369328_at NM_053922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053922.1 /DB_XREF=gi:16758803 /GEN=Acacb /FEA=FLmRNA /CNT=2 /TID=Rn.44359.1 /TIER=FL /STK=2 /UG=Rn.44359 /LL=116719 /DEF=Rattus norvegicus acetyl-Coenzyme A carboxylase beta (Acacb), mRNA. /PROD=acetyl-Coenzyme A carboxylase beta /FL=gb:NM_053922.1 gb:AB004329.1 NM_053922 acetyl-Coenzyme A carboxylase beta Acacb 116719 NM_053922 0006084 // acetyl-CoA metabolic process // inferred from direct assay /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // not recorded /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0046320 // regulation of fatty acid oxidation // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0003989 // acetyl-CoA carboxylase activity // inferred from direct assay /// 0003989 // acetyl-CoA carboxylase activity // inferred from mutant phenotype /// 0003989 // acetyl-CoA carboxylase activity // not recorded /// 0003989 // acetyl-CoA carboxylase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0009374 // biotin binding // inferred from mutant phenotype /// 0009374 // biotin binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1369329_at NM_020087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020087.2 /DB_XREF=gi:9966774 /GEN=Notch3 /FEA=FLmRNA /CNT=2 /TID=Rn.53876.1 /TIER=FL /STK=2 /UG=Rn.53876 /LL=56761 /DEF=Rattus norvegicus Notch 3 (Notch3), mRNA. /PROD=Notch 3 /FL=gb:NM_020087.2 gb:AF164486.2 NM_020087 Notch homolog 3 (Drosophila) Notch3 56761 NM_020087 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0007219 // Notch signaling pathway // inferred from direct assay /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0042246 // tissue regeneration // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0050793 // regulation of developmental process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369330_at NM_022861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022861.1 /DB_XREF=gi:12408317 /GEN=Unc13h1 /FEA=FLmRNA /CNT=2 /TID=Rn.10126.1 /TIER=FL /STK=2 /UG=Rn.10126 /LL=64829 /DEF=Rattus norvegicus Munc13-1 (Unc13h1), mRNA. /PROD=Munc13-1 /FL=gb:NM_022861.1 gb:U24070.1 NM_022861 unc-13 homolog A (C. elegans) Unc13a 64829 NM_022861 0006887 // exocytosis // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // inferred from direct assay /// 0016188 // synaptic vesicle maturation // not recorded /// 0050435 // beta-amyloid metabolic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation 0000149 // SNARE binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0017075 // syntaxin-1 binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from direct assay /// 0019992 // diacylglycerol binding // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from physical interaction 1369331_a_at AF159706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF159706.1 /DB_XREF=gi:5306122 /FEA=FLmRNA /CNT=1 /TID=Rn.10127.2 /TIER=FL /STK=1 /UG=Rn.10127 /LL=64830 /UG_GENE=Unc13h2 /DEF=Rattus norvegicus Munc13-2 protein mRNA, complete cds. /PROD=Munc13-2 protein /FL=gb:AF159706.1 AF159706 unc-13 homolog B (C. elegans) Unc13b 64830 NM_001042579 /// NM_022862 0006887 // exocytosis // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0016082 // synaptic vesicle priming // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0046872 // metal ion binding // inferred from electronic annotation 1369332_a_at NM_052829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_052829.1 /DB_XREF=gi:16306469 /GEN=Rim1 /FEA=FLmRNA /CNT=2 /TID=Rn.10799.1 /TIER=FL /STK=2 /UG=Rn.10799 /LL=84556 /DEF=Rattus norvegicus Rim1 protein (Rim1), mRNA. /PROD=Rim1b protein /FL=gb:NM_052829.1 gb:AF007836.1 NM_052829 regulating synaptic membrane exocytosis 1 Rims1 84556 NM_052829 0006461 // protein complex assembly // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0031632 // positive regulation of synaptic vesicle fusion to presynaptic membrane // non-traceable author statement /// 0048169 // regulation of long-term neuronal synaptic plasticity // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from physical interaction /// 0017137 // Rab GTPase binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369333_a_at NM_053945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053945.1 /DB_XREF=gi:16758819 /GEN=Rim2 /FEA=FLmRNA /CNT=2 /TID=Rn.55128.1 /TIER=FL /STK=2 /UG=Rn.55128 /LL=116839 /DEF=Rattus norvegicus Rim2 protein (Rim2), mRNA. /PROD=Rim2 protein /FL=gb:AF199322.1 gb:NM_053945.1 NM_053945 regulating synaptic membrane exocytosis 2 Rims2 116839 NM_053945 /// NM_145881 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006887 // exocytosis // traceable author statement /// 0006887 // exocytosis // inferred from electronic annotation /// 0017156 // calcium ion-dependent exocytosis // not recorded /// 0019933 // cAMP-mediated signaling // not recorded /// 0030073 // insulin secretion // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay 1369334_at NM_031828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031828.1 /DB_XREF=gi:13929183 /GEN=Kcnma1 /FEA=FLmRNA /CNT=2 /TID=Rn.10280.1 /TIER=FL /STK=2 /UG=Rn.10280 /LL=83731 /DEF=Rattus norvegicus potassium large conductance calcium-activated channel, ubfamily M, alpha member 1 (Kcnma1), mRNA. /PROD=potassium large conductance calcium-activatedchannel, ubfamily M, alpha member 1 /FL=gb:U40603.1 gb:NM_031828.1 NM_031828 potassium large conductance calcium-activated channel, subfamily M, alpha member 1 Kcnma1 83731 NM_031828 0001666 // response to hypoxia // inferred from direct assay /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // not recorded /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006970 // response to osmotic stress // not recorded /// 0006970 // response to osmotic stress // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007623 // circadian rhythm // not recorded /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0007628 // adult walking behavior // not recorded /// 0007628 // adult walking behavior // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009268 // response to pH // inferred from direct assay /// 0019228 // regulation of action potential in neuron // not recorded /// 0019228 // regulation of action potential in neuron // inferred from electronic annotation /// 0030007 // cellular potassium ion homeostasis // not recorded /// 0030007 // cellular potassium ion homeostasis // inferred from electronic annotation /// 0031960 // response to corticosteroid stimulus // inferred from direct assay /// 0032344 // regulation of aldosterone metabolic process // not recorded /// 0032344 // regulation of aldosterone metabolic process // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0034465 // response to carbon monoxide // not recorded /// 0034465 // response to carbon monoxide // inferred from electronic annotation /// 0034765 // regulation of ion transmembrane transport // not recorded /// 0042311 // vasodilation // not recorded /// 0042311 // vasodilation // inferred from electronic annotation /// 0042312 // regulation of vasodilation // inferred from direct assay /// 0042391 // regulation of membrane potential // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042491 // auditory receptor cell differentiation // not recorded /// 0042491 // auditory receptor cell differentiation // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0045475 // locomotor rhythm // not recorded /// 0045475 // locomotor rhythm // inferred from electronic annotation /// 0045794 // negative regulation of cell volume // not recorded /// 0045794 // negative regulation of cell volume // inferred from electronic annotation /// 0046541 // saliva secretion // not recorded /// 0046541 // saliva secretion // inferred from electronic annotation /// 0048469 // cell maturation // not recorded /// 0048469 // cell maturation // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from direct assay /// 0051592 // response to calcium ion // not recorded /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060073 // micturition // not recorded /// 0060073 // micturition // inferred from electronic annotation /// 0060082 // eye blink reflex // not recorded /// 0060082 // eye blink reflex // inferred from electronic annotation /// 0060083 // smooth muscle contraction involved in micturition // not recorded /// 0060083 // smooth muscle contraction involved in micturition // inferred from electronic annotation /// 0060087 // relaxation of vascular smooth muscle // not recorded /// 0060087 // relaxation of vascular smooth muscle // inferred from electronic annotation 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0005901 // caveola // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // not recorded /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0043195 // terminal button // not recorded /// 0043195 // terminal button // inferred from electronic annotation /// 0044444 // cytoplasmic part // not recorded /// 0044444 // cytoplasmic part // inferred from electronic annotation /// 0045211 // postsynaptic membrane // not recorded /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048787 // presynaptic active zone membrane // inferred from direct assay 0003779 // actin binding // not recorded /// 0003779 // actin binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // not recorded /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // not recorded /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0015269 // calcium-activated potassium channel activity // inferred from direct assay /// 0015269 // calcium-activated potassium channel activity // not recorded /// 0015269 // calcium-activated potassium channel activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0060072 // large conductance calcium-activated potassium channel activity // not recorded /// 0060072 // large conductance calcium-activated potassium channel activity // inferred from electronic annotation 1369335_at NM_022620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022620.1 /DB_XREF=gi:12018303 /GEN=Kpl2 /FEA=FLmRNA /CNT=2 /TID=Rn.48731.1 /TIER=FL /STK=2 /UG=Rn.48731 /LL=64555 /DEF=Rattus norvegicus KPL2 protein (Kpl2), mRNA. /PROD=KPL2 protein /FL=gb:AF102129.1 gb:NM_022620.1 NM_022620 sperm flagellar 2 Spef2 64555 NM_022620 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation /// 0019205 // nucleobase, nucleoside, nucleotide kinase activity // inferred from electronic annotation 1369336_at NM_024364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024364.1 /DB_XREF=gi:13242256 /GEN=hr /FEA=FLmRNA /CNT=2 /TID=Rn.41543.1 /TIER=FL /STK=2 /UG=Rn.41543 /LL=60563 /DEF=Rattus norvegicus hairless (hr), mRNA. /PROD=hairless protein /FL=gb:U71293.1 gb:NM_024364.1 NM_024364 hairless Hr 60563 NM_024364 0006350 // transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0043433 // negative regulation of transcription factor activity // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from direct assay 0000118 // histone deacetylase complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0016604 // nuclear body // inferred from electronic annotation /// 0016604 // nuclear body // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from direct assay /// 0003714 // transcription corepressor activity // not recorded /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042809 // vitamin D receptor binding // inferred from physical interaction /// 0042826 // histone deacetylase binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046966 // thyroid hormone receptor binding // inferred from physical interaction 1369337_at NM_021684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021684.1 /DB_XREF=gi:11067412 /GEN=LOC59320 /FEA=FLmRNA /CNT=2 /TID=Rn.42892.1 /TIER=FL /STK=2 /UG=Rn.42892 /LL=59320 /DEF=Rattus norvegicus soluble adenylyl cyclase (LOC59320), mRNA. /PROD=soluble adenylyl cyclase /FL=gb:NM_021684.1 gb:AF081941.1 NM_021684 adenylate cyclase 10 (soluble) Adcy10 59320 NM_021684 0006171 // cAMP biosynthetic process // inferred from direct assay /// 0006171 // cAMP biosynthetic process // inferred from mutant phenotype /// 0006171 // cAMP biosynthetic process // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0034199 // activation of protein kinase A activity // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005814 // centriole // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045177 // apical part of cell // inferred from direct assay /// 0045178 // basal part of cell // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004016 // adenylate cyclase activity // inferred from direct assay /// 0004016 // adenylate cyclase activity // inferred from mutant phenotype /// 0004016 // adenylate cyclase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051117 // ATPase binding // inferred from physical interaction 1369338_at NM_022188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022188.1 /DB_XREF=gi:11559952 /GEN=Robo1 /FEA=FLmRNA /CNT=2 /TID=Rn.44468.1 /TIER=FL /STK=2 /UG=Rn.44468 /LL=58946 /DEF=Rattus norvegicus roundabout homolog 1 (Drosophila) (Robo1), mRNA. /PROD=roundabout homolog 1 (Drosophila) /FL=gb:AF041082.1 gb:NM_022188.1 NM_022188 roundabout homolog 1 (Drosophila) Robo1 58946 NM_022188 0002042 // cell migration involved in sprouting angiogenesis // inferred from electronic annotation /// 0002042 // cell migration involved in sprouting angiogenesis // not recorded /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0006935 // chemotaxis // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // inferred from direct assay /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0016199 // axon midline choice point recognition // inferred from expression pattern /// 0016199 // axon midline choice point recognition // not recorded /// 0016199 // axon midline choice point recognition // inferred from electronic annotation /// 0021510 // spinal cord development // inferred from expression pattern /// 0021836 // chemorepulsion involved in postnatal olfactory bulb interneuron migration // inferred from electronic annotation /// 0021836 // chemorepulsion involved in postnatal olfactory bulb interneuron migration // not recorded /// 0021891 // olfactory bulb interneuron development // inferred from electronic annotation /// 0021891 // olfactory bulb interneuron development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0033600 // negative regulation of mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0033600 // negative regulation of mammary gland epithelial cell proliferation // not recorded /// 0035385 // Roundabout signaling pathway // inferred from electronic annotation /// 0035385 // Roundabout signaling pathway // not recorded /// 0048814 // regulation of dendrite morphogenesis // inferred from mutant phenotype /// 0050772 // positive regulation of axonogenesis // inferred from electronic annotation /// 0050772 // positive regulation of axonogenesis // not recorded /// 0050925 // negative regulation of negative chemotaxis // inferred from electronic annotation /// 0050925 // negative regulation of negative chemotaxis // not recorded /// 0060763 // mammary duct terminal end bud growth // inferred from electronic annotation /// 0060763 // mammary duct terminal end bud growth // not recorded /// 0070100 // negative regulation of chemokine-mediated signaling pathway // inferred from electronic annotation /// 0070100 // negative regulation of chemokine-mediated signaling pathway // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030673 // axolemma // inferred from electronic annotation /// 0030673 // axolemma // not recorded /// 0043025 // neuronal cell body // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008046 // axon guidance receptor activity // inferred from direct assay /// 0030275 // LRR domain binding // inferred from electronic annotation /// 0030275 // LRR domain binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1369339_at NM_012841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012841.1 /DB_XREF=gi:6978754 /GEN=Dcc /FEA=FLmRNA /CNT=2 /TID=Rn.10666.1 /TIER=FL /STK=2 /UG=Rn.10666 /LL=25311 /DEF=Rattus norvegicus Deleted in colcorectal cancer (rat homolog) (Dcc), mRNA. /PROD=deleted in colcorectal cancer (rat homolog) /FL=gb:NM_012841.1 gb:U68725.1 NM_012841 deleted in colorectal carcinoma Dcc 25311 NM_012841 0001764 // neuron migration // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0001975 // response to amphetamine // inferred from expression pattern /// 0007411 // axon guidance // inferred from mutant phenotype /// 0010976 // positive regulation of neuron projection development // inferred from mutant phenotype /// 0021965 // spinal cord ventral commissure morphogenesis // not recorded /// 0021965 // spinal cord ventral commissure morphogenesis // inferred from electronic annotation /// 0033563 // dorsal/ventral axon guidance // not recorded /// 0033563 // dorsal/ventral axon guidance // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from mutant phenotype 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // inferred from mutant phenotype /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0032584 // growth cone membrane // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0003713 // transcription coactivator activity // inferred from mutant phenotype /// 0005042 // netrin receptor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction 1369340_at NM_019378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019378.1 /DB_XREF=gi:9507126 /GEN=SNIP /FEA=FLmRNA /CNT=2 /TID=Rn.48762.1 /TIER=FL /STK=2 /UG=Rn.48762 /LL=56029 /DEF=Rattus norvegicus SNAP-25-interacting protein (SNIP), mRNA. /PROD=SNAP-25-interacting protein /FL=gb:NM_019378.1 gb:AF156982.1 NM_019378 SNAP25-interacting protein Snip 56029 NM_019378 0006887 // exocytosis // inferred from electronic annotation /// 0007162 // negative regulation of cell adhesion // not recorded /// 0030334 // regulation of cell migration // not recorded /// 0030334 // regulation of cell migration // inferred from sequence or structural similarity /// 0034446 // substrate adhesion-dependent cell spreading // not recorded /// 0034446 // substrate adhesion-dependent cell spreading // inferred from sequence or structural similarity /// 0051046 // regulation of secretion // non-traceable author statement /// 0061001 // regulation of dendritic spine morphogenesis // not recorded /// 0061001 // regulation of dendritic spine morphogenesis // inferred from sequence or structural similarity /// 0061098 // positive regulation of protein tyrosine kinase activity // not recorded /// 0061098 // positive regulation of protein tyrosine kinase activity // inferred from sequence or structural similarity /// 0061099 // negative regulation of protein tyrosine kinase activity // not recorded /// 0061099 // negative regulation of protein tyrosine kinase activity // inferred from sequence or structural similarity 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0015629 // actin cytoskeleton // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from sequence or structural similarity 1369341_a_at AF130819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF130819.1 /DB_XREF=gi:4838484 /FEA=FLmRNA /CNT=3 /TID=Rn.29998.2 /TIER=FL /STK=1 /UG=Rn.29998 /LL=113970 /UG_GENE=Acvrip1 /DEF=Rattus norvegicus S-SCAM beta mRNA, complete cds. /PROD=S-SCAM beta /FL=gb:AF130819.1 AF130819 membrane associated guanylate kinase, WW and PDZ domain containing 2 Magi2 113970 NM_053621 0007165 // signal transduction // not recorded /// 0043113 // receptor clustering // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation 0004871 // signal transducer activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0019902 // phosphatase binding // inferred from electronic annotation /// 0019902 // phosphatase binding // not recorded /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction 1369342_at NM_052803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_052803.1 /DB_XREF=gi:16258816 /GEN=Atp7a /FEA=FLmRNA /CNT=2 /TID=Rn.10554.1 /TIER=FL /STK=2 /UG=Rn.10554 /LL=24941 /DEF=Rattus norvegicus ATPase, Cu++ transporting, alpha polypeptide (Menkes syndrome) (Atp7a), mRNA. /PROD=ATPase, Cu++ transporting, alpha polypeptide(Menkes syndrome) /FL=gb:U59245.1 gb:NM_052803.1 NM_052803 ATPase, Cu++ transporting, alpha polypeptide Atp7a 24941 NM_052803 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001701 // in utero embryonic development // inferred from expression pattern /// 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // not recorded /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0001974 // blood vessel remodeling // not recorded /// 0002082 // regulation of oxidative phosphorylation // inferred from electronic annotation /// 0002082 // regulation of oxidative phosphorylation // not recorded /// 0006200 // ATP catabolic process // not recorded /// 0006568 // tryptophan metabolic process // inferred from electronic annotation /// 0006568 // tryptophan metabolic process // not recorded /// 0006570 // tyrosine metabolic process // inferred from electronic annotation /// 0006570 // tyrosine metabolic process // not recorded /// 0006584 // catecholamine metabolic process // not recorded /// 0006584 // catecholamine metabolic process // inferred from electronic annotation /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // not recorded /// 0006878 // cellular copper ion homeostasis // inferred from electronic annotation /// 0006878 // cellular copper ion homeostasis // not recorded /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0007595 // lactation // inferred from expression pattern /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0010041 // response to iron(III) ion // inferred from expression pattern /// 0010043 // response to zinc ion // inferred from expression pattern /// 0010273 // detoxification of copper ion // inferred from electronic annotation /// 0010273 // detoxification of copper ion // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0015674 // di-, tri-valent inorganic cation transport // not recorded /// 0015677 // copper ion import // inferred from electronic annotation /// 0015677 // copper ion import // not recorded /// 0018205 // peptidyl-lysine modification // inferred from electronic annotation /// 0018205 // peptidyl-lysine modification // not recorded /// 0019430 // removal of superoxide radicals // inferred from electronic annotation /// 0019430 // removal of superoxide radicals // not recorded /// 0021702 // cerebellar Purkinje cell differentiation // inferred from electronic annotation /// 0021702 // cerebellar Purkinje cell differentiation // not recorded /// 0021860 // pyramidal neuron development // inferred from electronic annotation /// 0021860 // pyramidal neuron development // not recorded /// 0021954 // central nervous system neuron development // inferred from electronic annotation /// 0021954 // central nervous system neuron development // not recorded /// 0030001 // metal ion transport // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0030199 // collagen fibril organization // not recorded /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // not recorded /// 0035137 // hindlimb morphogenesis // not recorded /// 0042093 // T-helper cell differentiation // inferred from electronic annotation /// 0042093 // T-helper cell differentiation // not recorded /// 0042414 // epinephrine metabolic process // inferred from electronic annotation /// 0042414 // epinephrine metabolic process // not recorded /// 0042415 // norepinephrine metabolic process // not recorded /// 0042415 // norepinephrine metabolic process // inferred from electronic annotation /// 0042417 // dopamine metabolic process // inferred from electronic annotation /// 0042417 // dopamine metabolic process // not recorded /// 0042421 // norepinephrine biosynthetic process // inferred from electronic annotation /// 0042421 // norepinephrine biosynthetic process // not recorded /// 0042428 // serotonin metabolic process // inferred from electronic annotation /// 0042428 // serotonin metabolic process // not recorded /// 0043085 // positive regulation of catalytic activity // not recorded /// 0043085 // positive regulation of catalytic activity // inferred from electronic annotation /// 0043473 // pigmentation // inferred from electronic annotation /// 0043473 // pigmentation // not recorded /// 0043526 // neuroprotection // inferred from electronic annotation /// 0043526 // neuroprotection // not recorded /// 0043588 // skin development // inferred from electronic annotation /// 0043588 // skin development // not recorded /// 0046034 // ATP metabolic process // not recorded /// 0046034 // ATP metabolic process // inferred from electronic annotation /// 0046688 // response to copper ion // inferred from direct assay /// 0048251 // elastic fiber assembly // inferred from electronic annotation /// 0048251 // elastic fiber assembly // not recorded /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048286 // lung alveolus development // not recorded /// 0048553 // negative regulation of metalloenzyme activity // inferred from electronic annotation /// 0048553 // negative regulation of metalloenzyme activity // not recorded /// 0048554 // positive regulation of metalloenzyme activity // inferred from electronic annotation /// 0048554 // positive regulation of metalloenzyme activity // not recorded /// 0048812 // neuron projection morphogenesis // not recorded /// 0048812 // neuron projection morphogenesis // inferred from electronic annotation /// 0048813 // dendrite morphogenesis // inferred from electronic annotation /// 0048813 // dendrite morphogenesis // not recorded /// 0051216 // cartilage development // inferred from electronic annotation /// 0051216 // cartilage development // not recorded /// 0051353 // positive regulation of oxidoreductase activity // not recorded /// 0051542 // elastin biosynthetic process // inferred from electronic annotation /// 0051542 // elastin biosynthetic process // not recorded /// 0060003 // copper ion export // not recorded /// 0060003 // copper ion export // inferred from electronic annotation 0000299 // integral to membrane of membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005802 // trans-Golgi network // not recorded /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016323 // basolateral plasma membrane // not recorded /// 0030140 // trans-Golgi network transport vesicle // not recorded /// 0030141 // stored secretory granule // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0031526 // brush border membrane // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004008 // copper-exporting ATPase activity // inferred from electronic annotation /// 0004008 // copper-exporting ATPase activity // not recorded /// 0005375 // copper ion transmembrane transporter activity // inferred from electronic annotation /// 0005375 // copper ion transmembrane transporter activity // not recorded /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005507 // copper ion binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016532 // superoxide dismutase copper chaperone activity // inferred from electronic annotation /// 0016532 // superoxide dismutase copper chaperone activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0032767 // copper-dependent protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046873 // metal ion transmembrane transporter activity // inferred from electronic annotation 1369343_at NM_032069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032069.1 /DB_XREF=gi:14091753 /GEN=Grip1 /FEA=FLmRNA /CNT=2 /TID=Rn.74240.1 /TIER=FL /STK=2 /UG=Rn.74240 /LL=84016 /DEF=Rattus norvegicus Glutamate receptor interacting protein (Grip1), mRNA. /PROD=Glutamate receptor interacting protein /FL=gb:U88572.1 gb:NM_032069.1 NM_032069 glutamate receptor interacting protein 1 Grip1 84016 NM_032069 0007399 // nervous system development // inferred from mutant phenotype /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded 1369344_at NM_023975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023975.1 /DB_XREF=gi:13027429 /GEN=Trag /FEA=FLmRNA /CNT=2 /TID=Rn.64515.1 /TIER=FL /STK=2 /UG=Rn.64515 /LL=66031 /DEF=Rattus norvegicus TGF-beta resistance-associated protein (Trag), mRNA. /PROD=TGF-beta resistance-associated protein /FL=gb:NM_023975.1 gb:AF305813.1 NM_023975 WD repeat domain 7 Wdr7 66031 NM_023975 1369345_at NM_053917 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053917.1 /DB_XREF=gi:16758795 /GEN=Inpp4b /FEA=FLmRNA /CNT=2 /TID=Rn.10829.1 /TIER=FL /STK=2 /UG=Rn.10829 /LL=116699 /DEF=Rattus norvegicus inositol polyphosphate-4-phosphatase, type II, 105kD (Inpp4b), mRNA. /PROD=inositol polyphosphate-4-phosphatase, type II,105kD /FL=gb:NM_053917.1 gb:U96921.1 NM_053917 inositol polyphosphate-4-phosphatase, type II Inpp4b 116699 NM_053917 0016316 // phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity // inferred from direct assay /// 0016316 // phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0034597 // phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity // inferred from electronic annotation 1369346_at NM_022632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022632.1 /DB_XREF=gi:12018325 /GEN=Slit2 /FEA=FLmRNA /CNT=2 /TID=Rn.48750.1 /TIER=FL /STK=2 /UG=Rn.48750 /LL=64567 /DEF=Rattus norvegicus slit (Drosophila) homolog 2 (Slit2), mRNA. /PROD=slit (Drosophila) homolog 2 /FL=gb:NM_022632.1 gb:AF141386.2 NM_022632 slit homolog 2 (Drosophila) Slit2 360272 NM_022632 0001554 // luteolysis // not recorded /// 0001656 // metanephros development // not recorded /// 0001657 // ureteric bud development // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0001933 // negative regulation of protein phosphorylation // not recorded /// 0002042 // cell migration involved in sprouting angiogenesis // not recorded /// 0002689 // negative regulation of leukocyte chemotaxis // not recorded /// 0006935 // chemotaxis // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007411 // axon guidance // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0008045 // motor axon guidance // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010593 // negative regulation of lamellipodium assembly // not recorded /// 0010596 // negative regulation of endothelial cell migration // not recorded /// 0010629 // negative regulation of gene expression // not recorded /// 0014912 // negative regulation of smooth muscle cell migration // not recorded /// 0016337 // cell-cell adhesion // not recorded /// 0021510 // spinal cord development // inferred from expression pattern /// 0021772 // olfactory bulb development // not recorded /// 0021834 // chemorepulsion involved in embryonic olfactory bulb interneuron migration // not recorded /// 0021836 // chemorepulsion involved in postnatal olfactory bulb interneuron migration // not recorded /// 0021972 // corticospinal neuron axon guidance through spinal cord // not recorded /// 0022029 // telencephalon cell migration // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0030336 // negative regulation of cell migration // not recorded /// 0030837 // negative regulation of actin filament polymerization // not recorded /// 0031290 // retinal ganglion cell axon guidance // not recorded /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // not recorded /// 0033563 // dorsal/ventral axon guidance // not recorded /// 0035385 // Roundabout signaling pathway // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043116 // negative regulation of vascular permeability // not recorded /// 0048754 // branching morphogenesis of a tube // not recorded /// 0048812 // neuron projection morphogenesis // not recorded /// 0048846 // axon extension involved in axon guidance // not recorded /// 0050728 // negative regulation of inflammatory response // inferred from mutant phenotype /// 0050919 // negative chemotaxis // not recorded /// 0050929 // induction of negative chemotaxis // not recorded /// 0051058 // negative regulation of small GTPase mediated signal transduction // not recorded /// 0051414 // response to cortisol stimulus // not recorded /// 0060603 // mammary gland duct morphogenesis // not recorded /// 0060763 // mammary duct terminal end bud growth // not recorded /// 0070100 // negative regulation of chemokine-mediated signaling pathway // not recorded /// 0071504 // cellular response to heparin // not recorded /// 0071672 // negative regulation of smooth muscle cell chemotaxis // not recorded /// 0071676 // negative regulation of mononuclear cell migration // not recorded /// 0090024 // negative regulation of neutrophil chemotaxis // not recorded /// 0090260 // negative regulation of retinal ganglion cell axon guidance // not recorded /// 0090288 // negative regulation of cellular response to growth factor stimulus // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0004963 // follicle-stimulating hormone receptor activity // inferred from electronic annotation /// 0005095 // GTPase inhibitor activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008201 // heparin binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043237 // laminin-1 binding // not recorded /// 0043394 // proteoglycan binding // not recorded /// 0043395 // heparan sulfate proteoglycan binding // inferred from direct assay /// 0045499 // chemorepellent activity // not recorded /// 0048495 // Roundabout binding // not recorded 1369347_s_at NM_138857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_138857.1 /DB_XREF=gi:20302009 /GEN=Trprp /FEA=FLmRNA /CNT=2 /TID=Affx.1.2 /TIER=FL /STK=2 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus testosterone-regulated prominin-related protein (Trprp), mRNA. /PROD=testosterone-regulated prominin-related protein /FL=gb:NM_138857.1 gb:AF486828.1 NM_138857 prominin 2 Prom2 192211 NM_138857 0005635 // nuclear envelope // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005929 // cilium // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031528 // microvillus membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0060170 // cilium membrane // inferred from electronic annotation 0004888 // transmembrane receptor activity // traceable author statement /// 0008083 // growth factor activity // traceable author statement 1369348_at NM_134371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134371.1 /DB_XREF=gi:19705470 /GEN=CMR1 /FEA=FLmRNA /CNT=2 /TID=Rn.81225.1 /TIER=FL /STK=2 /UG=Rn.81225 /DEF=Rattus norvegicus coldmenthol receptor 1 (CMR1), mRNA. /PROD=coldmenthol receptor 1 /FL=gb:AY072788.1 gb:NM_134371.1 NM_134371 transient receptor potential cation channel, subfamily M, member 8 Trpm8 171384 NM_134371 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0009266 // response to temperature stimulus // not recorded /// 0009266 // response to temperature stimulus // inferred from electronic annotation /// 0009409 // response to cold // inferred from direct assay /// 0009409 // response to cold // not recorded /// 0009409 // response to cold // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050955 // thermoception // inferred from electronic annotation /// 0050955 // thermoception // not recorded /// 0051289 // protein homotetramerization // inferred from electronic annotation /// 0051289 // protein homotetramerization // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070207 // protein homotrimerization // inferred from electronic annotation /// 0070207 // protein homotrimerization // not recorded /// 0070588 // calcium ion transmembrane transport // not recorded 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from direct assay /// 0005216 // ion channel activity // not recorded /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1369349_a_at NM_080893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080893.1 /DB_XREF=gi:18266693 /GEN=Pde11a /FEA=FLmRNA /CNT=2 /TID=Rn.81204.1 /TIER=FL /STK=2 /UG=Rn.81204 /DEF=Rattus norvegicus phosphodiesterase 11A (Pde11a), mRNA. /PROD=phosphodiesterase 11A /FL=gb:AB059362.1 gb:NM_080893.1 NM_080893 phosphodiesterase 11A Pde11a 140928 NM_001127480 /// NM_001127481 /// NM_080893 0006198 // cAMP catabolic process // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0046069 // cGMP catabolic process // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0043204 // perikaryon // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004112 // cyclic-nucleotide phosphodiesterase activity // inferred from direct assay /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030552 // cAMP binding // inferred from direct assay /// 0030553 // cGMP binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047555 // 3',5'-cyclic-GMP phosphodiesterase activity // inferred from electronic annotation 1369350_at NM_133322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133322.1 /DB_XREF=gi:18959271 /GEN=Kcnq2 /FEA=FLmRNA /CNT=2 /TID=Rn.33317.1 /TIER=FL /STK=2 /UG=Rn.33317 /LL=170848 /DEF=Rattus norvegicus potassium voltage-gated channel, KQT-like subfamily, member 2 (Kcnq2), mRNA. /PROD=potassium voltage-gated channel, KQT-likesubfamily, member 2 /FL=gb:NM_133322.1 gb:AF087453.2 NM_133322 potassium voltage-gated channel, KQT-like subfamily, member 2 Kcnq2 170848 NM_133322 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction 1369351_at NM_019329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019329.1 /DB_XREF=gi:9506948 /GEN=Cntn3 /FEA=FLmRNA /CNT=2 /TID=Rn.10043.1 /TIER=FL /STK=2 /UG=Rn.10043 /LL=54279 /DEF=Rattus norvegicus Plasmacytoma-associated neuronal glycoprotein (neural cell adhesion molecule BIG-1) (Cntn3), mRNA. /PROD=Plasmacytoma-associated neuronal glycoprotein(neural cell adhesion molecule BIG-1) /FL=gb:U11031.1 gb:NM_019329.1 NM_019329 contactin 3 (plasmacytoma associated) Cntn3 54279 NM_019329 0007155 // cell adhesion // inferred from electronic annotation /// 0007399 // nervous system development // inferred from direct assay /// 0016337 // cell-cell adhesion // traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0046658 // anchored to plasma membrane // non-traceable author statement 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369352_at NM_031787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031787.1 /DB_XREF=gi:13929113 /GEN=Hipk3 /FEA=FLmRNA /CNT=2 /TID=Rn.8099.1 /TIER=FL /STK=2 /UG=Rn.8099 /LL=83617 /DEF=Rattus norvegicus homeodomain-interacting protein kinase 3 (Hipk3), mRNA. /PROD=homeodomain-interacting protein kinase 3 /FL=gb:NM_031787.1 gb:AF036959.1 NM_031787 homeodomain interacting protein kinase 3 Hipk3 83617 NM_031787 0006350 // transcription // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0018107 // peptidyl-threonine phosphorylation // not recorded /// 0043508 // negative regulation of JUN kinase activity // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016605 // PML body // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1369353_at NM_021687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021687.1 /DB_XREF=gi:11067414 /GEN=Erbb4 /FEA=FLmRNA /CNT=2 /TID=Rn.42894.1 /TIER=FL /STK=2 /UG=Rn.42894 /LL=59323 /DEF=Rattus norvegicus receptor tyrosine kinase (Erbb4), mRNA. /PROD=receptor tyrosine kinase /FL=gb:NM_021687.1 gb:AF041838.1 NM_021687 v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian) Erbb4 59323 NM_021687 0006350 // transcription // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // traceable author statement /// 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0021537 // telencephalon development // inferred from expression pattern /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030879 // mammary gland development // inferred from expression pattern /// 0032230 // positive regulation of synaptic transmission, GABAergic // inferred from mutant phenotype /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0042476 // odontogenesis // inferred from expression pattern /// 0042476 // odontogenesis // non-traceable author statement /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043129 // surfactant homeostasis // inferred from mutant phenotype /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045165 // cell fate commitment // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0046326 // positive regulation of glucose import // inferred from mutant phenotype /// 0050679 // positive regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0060074 // synapse maturation // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005901 // caveola // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0045121 // membrane raft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004716 // receptor signaling protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1369354_at NM_023981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023981.1 /DB_XREF=gi:13027439 /GEN=Csf1 /FEA=FLmRNA /CNT=2 /TID=Rn.64526.1 /TIER=FL /STK=2 /UG=Rn.64526 /LL=78965 /DEF=Rattus norvegicus colony stimulating factor 1(macrophage) (Csf1), mRNA. /PROD=colony stimulating factor 1(macrophage) /FL=gb:NM_023981.1 gb:M84361.1 NM_023981 colony stimulating factor 1 (macrophage) Csf1 78965 NM_023981 0001503 // ossification // inferred from mutant phenotype /// 0001503 // ossification // inferred from electronic annotation /// 0001954 // positive regulation of cell-matrix adhesion // inferred from electronic annotation /// 0001954 // positive regulation of cell-matrix adhesion // not recorded /// 0001954 // positive regulation of cell-matrix adhesion // inferred from genetic interaction /// 0003006 // developmental process involved in reproduction // inferred from electronic annotation /// 0003006 // developmental process involved in reproduction // not recorded /// 0003006 // developmental process involved in reproduction // inferred from mutant phenotype /// 0007275 // multicellular organismal development // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0010744 // positive regulation of macrophage derived foam cell differentiation // inferred from electronic annotation /// 0010744 // positive regulation of macrophage derived foam cell differentiation // not recorded /// 0030225 // macrophage differentiation // inferred from expression pattern /// 0030225 // macrophage differentiation // inferred from electronic annotation /// 0030278 // regulation of ossification // inferred from electronic annotation /// 0030278 // regulation of ossification // not recorded /// 0030278 // regulation of ossification // inferred from mutant phenotype /// 0030316 // osteoclast differentiation // inferred from mutant phenotype /// 0030316 // osteoclast differentiation // not recorded /// 0030316 // osteoclast differentiation // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0030335 // positive regulation of cell migration // inferred from genetic interaction /// 0032270 // positive regulation of cellular protein metabolic process // inferred from electronic annotation /// 0032270 // positive regulation of cellular protein metabolic process // not recorded /// 0032946 // positive regulation of mononuclear cell proliferation // inferred from electronic annotation /// 0032946 // positive regulation of mononuclear cell proliferation // not recorded /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0040018 // positive regulation of multicellular organism growth // inferred from mutant phenotype /// 0042476 // odontogenesis // inferred from mutant phenotype /// 0042476 // odontogenesis // inferred from electronic annotation /// 0042488 // positive regulation of odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042488 // positive regulation of odontogenesis of dentine-containing tooth // not recorded /// 0042488 // positive regulation of odontogenesis of dentine-containing tooth // inferred from mutant phenotype /// 0045651 // positive regulation of macrophage differentiation // inferred from electronic annotation /// 0045651 // positive regulation of macrophage differentiation // not recorded /// 0045651 // positive regulation of macrophage differentiation // inferred from mutant phenotype /// 0045657 // positive regulation of monocyte differentiation // inferred from electronic annotation /// 0045657 // positive regulation of monocyte differentiation // not recorded /// 0045657 // positive regulation of monocyte differentiation // inferred from mutant phenotype /// 0045672 // positive regulation of osteoclast differentiation // inferred from electronic annotation /// 0045672 // positive regulation of osteoclast differentiation // not recorded /// 0045672 // positive regulation of osteoclast differentiation // inferred from direct assay /// 0045672 // positive regulation of osteoclast differentiation // inferred from genetic interaction /// 0045672 // positive regulation of osteoclast differentiation // inferred from mutant phenotype /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from genetic interaction /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from direct assay /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // not recorded /// 0048873 // homeostasis of number of cells within a tissue // inferred from mutant phenotype /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060444 // branching involved in mammary gland duct morphogenesis // not recorded /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from mutant phenotype /// 0060611 // mammary gland fat development // inferred from electronic annotation /// 0060611 // mammary gland fat development // not recorded /// 0060611 // mammary gland fat development // inferred from mutant phenotype /// 0060763 // mammary duct terminal end bud growth // inferred from electronic annotation /// 0060763 // mammary duct terminal end bud growth // not recorded /// 0060763 // mammary duct terminal end bud growth // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043235 // receptor complex // inferred from electronic annotation /// 0043235 // receptor complex // not recorded /// 0043235 // receptor complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005157 // macrophage colony-stimulating factor receptor binding // inferred from electronic annotation /// 0005157 // macrophage colony-stimulating factor receptor binding // not recorded /// 0005157 // macrophage colony-stimulating factor receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction 1369355_at NM_017012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017012.1 /DB_XREF=gi:8393489 /GEN=Grm5 /FEA=FLmRNA /CNT=2 /TID=Rn.29972.1 /TIER=FL /STK=2 /UG=Rn.29972 /LL=24418 /DEF=Rattus norvegicus Glutamate receptor, metabotropic 5 (Grm5), mRNA. /PROD=glutamate receptor, metabotropic 5 /FL=gb:D10891.1 gb:NM_017012.1 NM_017012 glutamate receptor, metabotropic 5 Grm5 24418 NM_017012 0000185 // activation of MAPKKK activity // inferred from direct assay /// 0002029 // desensitization of G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // traceable author statement /// 0007206 // activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway // traceable author statement /// 0007268 // synaptic transmission // inferred from mutant phenotype /// 0007612 // learning // inferred from electronic annotation /// 0007612 // learning // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0040013 // negative regulation of locomotion // inferred from direct assay /// 0048015 // phosphoinositide-mediated signaling // traceable author statement /// 0048169 // regulation of long-term neuronal synaptic plasticity // not recorded /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048170 // positive regulation of long-term neuronal synaptic plasticity // inferred from direct assay /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // traceable author statement 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0045211 // postsynaptic membrane // traceable author statement 0001639 // PLC activating metabotropic glutamate receptor activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // traceable author statement /// 0030165 // PDZ domain binding // traceable author statement /// 0031687 // A2A adenosine receptor binding // inferred from physical interaction 1369356_at NM_053831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053831.1 /DB_XREF=gi:16758683 /GEN=Gucy2f /FEA=FLmRNA /CNT=2 /TID=Rn.10061.1 /TIER=FL /STK=2 /UG=Rn.10061 /LL=116556 /DEF=Rattus norvegicus guanylate cyclase 2F, retinal (Gucy2f), mRNA. /PROD=guanylate cyclase 2F, retinal /FL=gb:NM_053831.1 gb:L36030.1 NM_053831 guanylate cyclase 2F Gucy2f 116556 NM_053831 0006182 // cGMP biosynthetic process // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007601 // visual perception // inferred from electronic annotation /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // inferred from direct assay /// 0004383 // guanylate cyclase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1369357_at NM_022626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022626.1 /DB_XREF=gi:12018313 /GEN=Pcyt1b /FEA=FLmRNA /CNT=2 /TID=Rn.48743.1 /TIER=FL /STK=2 /UG=Rn.48743 /LL=64561 /DEF=Rattus norvegicus phosphorylase B kinase alpha subunit (Pcyt1b), mRNA. /PROD=phosphorylase B kinase alpha subunit /FL=gb:NM_022626.1 gb:AF197561.1 NM_022626 phosphorylase kinase, alpha 1 Phka1 64561 NM_022626 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005976 // polysaccharide metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0006656 // phosphatidylcholine biosynthetic process // traceable author statement /// 0046777 // protein autophosphorylation // inferred from direct assay 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005964 // phosphorylase kinase complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004105 // choline-phosphate cytidylyltransferase activity // traceable author statement /// 0004339 // glucan 1,4-alpha-glucosidase activity // inferred from electronic annotation /// 0004689 // phosphorylase kinase activity // inferred from direct assay /// 0005516 // calmodulin binding // inferred from electronic annotation 1369358_a_at AI412750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412750 /DB_XREF=gi:4256254 /DB_XREF=EST241049 /CLONE=RBRDS20 /FEA=EST /CNT=10 /TID=Rn.37430.3 /TIER=Stack /STK=6 /UG=Rn.37430 /LL=29430 /UG_GENE=Hap1 /UG_TITLE=huntingtin-associated protein 1 AI412750 huntingtin-associated protein 1 Hap1 29430 NM_024133 /// NM_177982 0010976 // positive regulation of neuron projection development // inferred from direct assay /// 0045022 // early endosome to late endosome transport // traceable author statement /// 0047496 // vesicle transport along microtubule // inferred from electronic annotation /// 0047496 // vesicle transport along microtubule // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern 0005769 // early endosome // traceable author statement /// 0005770 // late endosome // traceable author statement /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369359_at NM_017021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017021.1 /DB_XREF=gi:8393601 /GEN=Il9r /FEA=FLmRNA /CNT=2 /TID=Rn.10045.1 /TIER=FL /STK=2 /UG=Rn.10045 /LL=24500 /DEF=Rattus norvegicus Interleukin 9 receptor (Il9r), mRNA. /PROD=interleukin 9 receptor /FL=gb:NM_017021.1 gb:L36459.1 NM_017021 interleukin 9 receptor Il9r 24500 NM_017021 0030307 // positive regulation of cell growth // inferred from direct assay 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004919 // interleukin-9 receptor activity // inferred from direct assay /// 0019983 // interleukin-9 binding // inferred from direct assay 1369360_at NM_024380 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024380.1 /DB_XREF=gi:13242282 /GEN=Gucy2e /FEA=FLmRNA /CNT=2 /TID=Rn.10060.1 /TIER=FL /STK=2 /UG=Rn.10060 /LL=79222 /DEF=Rattus norvegicus guanylyl cyclase (GC-E) (Gucy2e), mRNA. /PROD=guanylyl cyclase (GC-E) /FL=gb:NM_024380.1 gb:L36029.1 NM_024380 guanylate cyclase 2E Gucy2e 79222 NM_024380 0006182 // cGMP biosynthetic process // inferred from direct assay /// 0006182 // cGMP biosynthetic process // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007601 // visual perception // inferred from electronic annotation /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // inferred from direct assay /// 0004383 // guanylate cyclase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction 1369361_at NM_031336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031336.1 /DB_XREF=gi:13786167 /GEN=Kl /FEA=FLmRNA /CNT=2 /TID=Rn.30061.1 /TIER=FL /STK=2 /UG=Rn.30061 /LL=83504 /DEF=Rattus norvegicus Klotho (Kl), mRNA. /PROD=Klotho /FL=gb:NM_031336.1 gb:AB017820.1 NM_031336 Klotho Kl 83504 NM_031336 0002526 // acute inflammatory response // inferred from direct assay /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006112 // energy reserve metabolic process // inferred from electronic annotation /// 0006112 // energy reserve metabolic process // not recorded /// 0007568 // aging // not recorded /// 0007568 // aging // traceable author statement /// 0007568 // aging // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0030501 // positive regulation of bone mineralization // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // not recorded /// 0090080 // positive regulation of MAPKKK cascade by fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0090080 // positive regulation of MAPKKK cascade by fibroblast growth factor receptor signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004566 // beta-glucuronidase activity // inferred from electronic annotation /// 0005104 // fibroblast growth factor receptor binding // inferred from electronic annotation /// 0005104 // fibroblast growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // not recorded /// 0043169 // cation binding // inferred from electronic annotation 1369362_at NM_021854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021854.1 /DB_XREF=gi:11177893 /GEN=Tsc1 /FEA=FLmRNA /CNT=2 /TID=Rn.44286.1 /TIER=FL /STK=2 /UG=Rn.44286 /LL=60445 /DEF=Rattus norvegicus tuberous sclerosis 1 (Tsc1), mRNA. /PROD=tuberous sclerosis 1 /FL=gb:NM_021854.1 gb:AB011821.1 NM_021854 tuberous sclerosis 1 Tsc1 60445 NM_021854 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0001843 // neural tube closure // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0001952 // regulation of cell-matrix adhesion // not recorded /// 0001952 // regulation of cell-matrix adhesion // inferred from electronic annotation /// 0006407 // rRNA export from nucleus // inferred from electronic annotation /// 0006407 // rRNA export from nucleus // not recorded /// 0006417 // regulation of translation // not recorded /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // not recorded /// 0007160 // cell-matrix adhesion // not recorded /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0017148 // negative regulation of translation // not recorded /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0021987 // cerebral cortex development // not recorded /// 0030030 // cell projection organization // inferred from electronic annotation /// 0030030 // cell projection organization // not recorded /// 0031397 // negative regulation of protein ubiquitination // inferred from electronic annotation /// 0031397 // negative regulation of protein ubiquitination // not recorded /// 0032007 // negative regulation of TOR signaling cascade // inferred from electronic annotation /// 0032007 // negative regulation of TOR signaling cascade // not recorded /// 0032862 // activation of Rho GTPase activity // inferred from electronic annotation /// 0032862 // activation of Rho GTPase activity // not recorded /// 0032868 // response to insulin stimulus // inferred from electronic annotation /// 0032868 // response to insulin stimulus // not recorded /// 0032956 // regulation of actin cytoskeleton organization // inferred from mutant phenotype /// 0042552 // myelination // inferred from electronic annotation /// 0042552 // myelination // not recorded /// 0043666 // regulation of phosphoprotein phosphatase activity // inferred from electronic annotation /// 0043666 // regulation of phosphoprotein phosphatase activity // not recorded /// 0045792 // negative regulation of cell size // inferred from electronic annotation /// 0045792 // negative regulation of cell size // not recorded /// 0045859 // regulation of protein kinase activity // inferred from electronic annotation /// 0045859 // regulation of protein kinase activity // not recorded /// 0050808 // synapse organization // inferred from electronic annotation /// 0050808 // synapse organization // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051492 // regulation of stress fiber assembly // inferred from mutant phenotype /// 0051492 // regulation of stress fiber assembly // not recorded /// 0051492 // regulation of stress fiber assembly // inferred from electronic annotation /// 0051893 // regulation of focal adhesion assembly // inferred from mutant phenotype /// 0051894 // positive regulation of focal adhesion assembly // inferred from electronic annotation /// 0051894 // positive regulation of focal adhesion assembly // not recorded /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005884 // actin filament // inferred from electronic annotation /// 0005884 // actin filament // not recorded /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030426 // growth cone // inferred from direct assay /// 0033596 // TSC1-TSC2 complex // inferred from electronic annotation /// 0033596 // TSC1-TSC2 complex // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0043234 // protein complex // inferred from mutant phenotype /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from electronic annotation /// 0044430 // cytoskeletal part // inferred from direct assay 0005515 // protein binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0030695 // GTPase regulator activity // inferred from mutant phenotype /// 0032794 // GTPase activating protein binding // inferred from physical interaction /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0047485 // protein N-terminus binding // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0051087 // chaperone binding // inferred from electronic annotation /// 0051087 // chaperone binding // not recorded 1369363_at NM_012761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012761.1 /DB_XREF=gi:6981571 /GEN=Sp4 /FEA=FLmRNA /CNT=2 /TID=Rn.9989.1 /TIER=FL /STK=2 /UG=Rn.9989 /LL=25162 /DEF=Rattus norvegicus Trans-acting transcription factor 4 (Sp4), mRNA. /PROD=trans-acting transcription factor 4 /FL=gb:NM_012761.1 gb:U07610.1 NM_012761 Sp4 transcription factor Sp4 25162 NM_012761 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0008016 // regulation of heart contraction // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation 1369364_at NM_022848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022848.1 /DB_XREF=gi:12408293 /GEN=Atp1a4 /FEA=FLmRNA /CNT=2 /TID=Rn.10013.1 /TIER=FL /STK=2 /UG=Rn.10013 /LL=29132 /DEF=Rattus norvegicus ATPase, Na+K+ transporting, alpha 4 polypeptide (Atp1a4), mRNA. /PROD=ATPase, Na+K+ transporting, alpha 4polypeptide /FL=gb:U15176.1 gb:NM_022848.1 NM_022848 ATPase, Na+/K+ transporting, alpha 4 polypeptide Atp1a4 29132 NM_022848 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006813 // potassium ion transport // traceable author statement /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // traceable author statement /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0015672 // monovalent inorganic cation transport // inferred from electronic annotation /// 0030317 // sperm motility // inferred from direct assay /// 0030317 // sperm motility // not recorded /// 0030317 // sperm motility // inferred from sequence or structural similarity /// 0030641 // regulation of cellular pH // inferred from direct assay /// 0030641 // regulation of cellular pH // not recorded /// 0030641 // regulation of cellular pH // inferred from sequence or structural similarity 0005890 // sodium:potassium-exchanging ATPase complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005391 // sodium:potassium-exchanging ATPase activity // traceable author statement /// 0005391 // sodium:potassium-exchanging ATPase activity // inferred from direct assay /// 0005391 // sodium:potassium-exchanging ATPase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015077 // monovalent inorganic cation transmembrane transporter activity // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369365_at NM_017337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017337.1 /DB_XREF=gi:8567397 /GEN=Pde3a /FEA=FLmRNA /CNT=2 /TID=Rn.44403.1 /TIER=FL /STK=2 /UG=Rn.44403 /LL=50678 /DEF=Rattus norvegicus phosphodiesterase 3A, cGMP inhibited (Pde3a), mRNA. /PROD=cyclic nucleotide phosphodiesterase /FL=gb:NM_017337.1 gb:U38179.1 NM_017337 phosphodiesterase 3A, cGMP inhibited Pde3a 50678 NM_017337 0001556 // oocyte maturation // inferred from expression pattern /// 0001556 // oocyte maturation // not recorded /// 0001556 // oocyte maturation // traceable author statement /// 0001556 // oocyte maturation // inferred from electronic annotation /// 0006198 // cAMP catabolic process // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0040020 // regulation of meiosis // inferred from electronic annotation /// 0040020 // regulation of meiosis // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0051591 // response to cAMP // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005625 // soluble fraction // not recorded /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005626 // insoluble fraction // inferred from electronic annotation /// 0005626 // insoluble fraction // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004112 // cyclic-nucleotide phosphodiesterase activity // traceable author statement /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from direct assay /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // not recorded /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from electronic annotation /// 0004119 // cGMP-inhibited cyclic-nucleotide phosphodiesterase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030552 // cAMP binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1369366_at NM_053746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053746.1 /DB_XREF=gi:16758573 /GEN=Cntn5 /FEA=FLmRNA /CNT=2 /TID=Rn.10643.1 /TIER=FL /STK=2 /UG=Rn.10643 /LL=114589 /DEF=Rattus norvegicus contactin 5 (Cntn5), mRNA. /PROD=contactin 5 /FL=gb:NM_053746.1 gb:D87212.1 NM_053746 contactin 5 Cntn5 114589 NM_053746 0007155 // cell adhesion // non-traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1369367_at NM_022638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022638.1 /DB_XREF=gi:12018337 /GEN=Trrp2 /FEA=FLmRNA /CNT=2 /TID=Rn.48766.1 /TIER=FL /STK=2 /UG=Rn.48766 /LL=64573 /DEF=Rattus norvegicus transient receptor protein 2 (Trrp2), mRNA. /PROD=transient receptor protein 2 /FL=gb:AF136401.1 gb:NM_022638.1 NM_022638 transient receptor potential cation channel, subfamily C, member 2 Trpc2 64573 XM_002725704 /// XM_002728801 0000012 // single strand break repair // inferred from electronic annotation /// 0002121 // inter-male aggressive behavior // inferred from electronic annotation /// 0002121 // inter-male aggressive behavior // not recorded /// 0002124 // territorial aggressive behavior // inferred from electronic annotation /// 0002124 // territorial aggressive behavior // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007340 // acrosome reaction // inferred from electronic annotation /// 0007340 // acrosome reaction // not recorded /// 0008050 // female courtship behavior // inferred from electronic annotation /// 0008050 // female courtship behavior // not recorded /// 0019236 // response to pheromone // inferred from electronic annotation /// 0019236 // response to pheromone // not recorded /// 0048047 // mating behavior, sex discrimination // inferred from electronic annotation /// 0048047 // mating behavior, sex discrimination // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0000139 // Golgi membrane // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032590 // dendrite membrane // inferred from electronic annotation /// 0032590 // dendrite membrane // not recorded 0003684 // damaged DNA binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // not recorded /// 0015279 // store-operated calcium channel activity // inferred from electronic annotation /// 0015279 // store-operated calcium channel activity // not recorded /// 0019992 // diacylglycerol binding // inferred from electronic annotation /// 0019992 // diacylglycerol binding // not recorded 1369368_at NM_080898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080898.1 /DB_XREF=gi:18266703 /GEN=Trrp5 /FEA=FLmRNA /CNT=2 /TID=Rn.81201.1 /TIER=FL /STK=2 /UG=Rn.81201 /DEF=Rattus norvegicus transient receptor protein 5 (Trrp5), mRNA. /PROD=transient receptor protein 5 /FL=gb:AY064411.1 gb:NM_080898.1 NM_080898 transient receptor potential cation channel, subfamily C, member 5 Trpc5 140933 NM_080898 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0034704 // calcium channel complex // inferred from electronic annotation /// 0034704 // calcium channel complex // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369369_at NM_054000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_054000.1 /DB_XREF=gi:16758911 /GEN=Kcnb2 /FEA=FLmRNA /CNT=2 /TID=Rn.32101.1 /TIER=FL /STK=2 /UG=Rn.32101 /LL=117105 /DEF=Rattus norvegicus potassium voltage gated channel, Shab-related subfamily, member 2 (Kcnb2), mRNA. /PROD=potassium voltage gated channel, Shab-relatedsubfamily, member 2 /FL=gb:M77482.1 gb:NM_054000.1 NM_054000 potassium voltage gated channel, Shab-related subfamily, member 2 Kcnb2 117105 NM_054000 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369370_s_at NM_023970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023970.1 /DB_XREF=gi:13027423 /GEN=Otrpc4-pending /FEA=FLmRNA /CNT=2 /TID=Rn.64508.1 /TIER=FL /STK=2 /UG=Rn.64508 /LL=66026 /DEF=Rattus norvegicus osmosensitive transient receptor potential channel 4 (Otrpc4-pending), mRNA. /PROD=vanilloid receptor-related osmotically activatedchannel (Vroac) /FL=gb:NM_023970.1 gb:AF263521.1 NM_023970 transient receptor potential cation channel, subfamily V, member 1 /// transient receptor potential cation channel, subfamily V, member 4 Trpv1 /// Trpv4 66026 /// 83810 NM_023970 /// NM_031982 0001659 // temperature homeostasis // inferred from electronic annotation /// 0001659 // temperature homeostasis // not recorded /// 0001660 // fever // inferred from electronic annotation /// 0001660 // fever // not recorded /// 0001774 // microglial cell activation // inferred from mutant phenotype /// 0002024 // diet induced thermogenesis // inferred from electronic annotation /// 0002024 // diet induced thermogenesis // not recorded /// 0002790 // peptide secretion // inferred from electronic annotation /// 0002790 // peptide secretion // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from sequence or structural similarity /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006970 // response to osmotic stress // not recorded /// 0006970 // response to osmotic stress // inferred from electronic annotation /// 0006971 // hypotonic response // inferred from direct assay /// 0007043 // cell-cell junction assembly // not recorded /// 0007043 // cell-cell junction assembly // inferred from sequence or structural similarity /// 0007165 // signal transduction // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007231 // osmosensory signaling pathway // inferred from electronic annotation /// 0007231 // osmosensory signaling pathway // not recorded /// 0009268 // response to pH // inferred from direct assay /// 0009268 // response to pH // inferred from expression pattern /// 0009268 // response to pH // not recorded /// 0009268 // response to pH // inferred from electronic annotation /// 0009408 // response to heat // inferred from direct assay /// 0009408 // response to heat // not recorded /// 0009408 // response to heat // inferred from electronic annotation /// 0014047 // glutamate secretion // inferred from direct assay /// 0014832 // urinary bladder smooth muscle contraction // not recorded /// 0014832 // urinary bladder smooth muscle contraction // inferred from electronic annotation /// 0019233 // sensory perception of pain // not recorded /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0030103 // vasopressin secretion // inferred from electronic annotation /// 0030103 // vasopressin secretion // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0042221 // response to chemical stimulus // inferred from electronic annotation /// 0042221 // response to chemical stimulus // not recorded /// 0042538 // hyperosmotic salinity response // inferred from electronic annotation /// 0042538 // hyperosmotic salinity response // not recorded /// 0042637 // catagen // inferred from electronic annotation /// 0042637 // catagen // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from mutant phenotype /// 0047484 // regulation of response to osmotic stress // inferred from electronic annotation /// 0047484 // regulation of response to osmotic stress // not recorded /// 0048265 // response to pain // not recorded /// 0048265 // response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // not recorded /// 0050954 // sensory perception of mechanical stimulus // inferred from electronic annotation /// 0050954 // sensory perception of mechanical stimulus // not recorded /// 0050955 // thermoception // not recorded /// 0050968 // detection of chemical stimulus involved in sensory perception of pain // inferred from electronic annotation /// 0050968 // detection of chemical stimulus involved in sensory perception of pain // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060083 // smooth muscle contraction involved in micturition // inferred from electronic annotation /// 0060083 // smooth muscle contraction involved in micturition // not recorded /// 0060454 // positive regulation of gastric acid secretion // inferred from mutant phenotype /// 0070588 // calcium ion transmembrane transport // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern /// 0071502 // cellular response to temperature stimulus // inferred from expression pattern /// 0090212 // negative regulation of establishment of blood-brain barrier // inferred from mutant phenotype 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0005912 // adherens junction // inferred from sequence or structural similarity /// 0005912 // adherens junction // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0005929 // cilium // not recorded /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043005 // neuron projection // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005034 // osmosensor activity // inferred from electronic annotation /// 0005034 // osmosensor activity // not recorded /// 0005216 // ion channel activity // not recorded /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // inferred from direct assay /// 0005261 // cation channel activity // not recorded /// 0005261 // cation channel activity // inferred from sequence or structural similarity /// 0005261 // cation channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // not recorded /// 0005516 // calmodulin binding // inferred from sequence or structural similarity /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008324 // cation transmembrane transporter activity // inferred from direct assay /// 0017081 // chloride channel regulator activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1369371_a_at Y10369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y10369.1 /DB_XREF=gi:1929418 /GEN=GABA-BR1a /FEA=mRNA /CNT=1 /TID=Rn.30059.5 /TIER=ConsEnd /STK=0 /UG=Rn.30059 /LL=81657 /UG_TITLE=gamma-aminobutyric acid (GABA) B receptor, 1 /DEF=R.norvegicus mRNA for GABA-BR1a receptor. Y10369 gamma-aminobutyric acid (GABA) B receptor 1 Gabbr1 81657 NM_031028 0001649 // osteoblast differentiation // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007194 // negative regulation of adenylate cyclase activity // inferred from direct assay /// 0007194 // negative regulation of adenylate cyclase activity // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0014048 // regulation of glutamate secretion // inferred from direct assay /// 0014053 // negative regulation of gamma-aminobutyric acid secretion // inferred from mutant phenotype /// 0030817 // regulation of cAMP biosynthetic process // inferred from direct assay /// 0032811 // negative regulation of epinephrine secretion // inferred from mutant phenotype /// 0033602 // negative regulation of dopamine secretion // inferred from direct assay /// 0035094 // response to nicotine // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0050805 // negative regulation of synaptic transmission // inferred from direct assay /// 0060124 // positive regulation of growth hormone secretion // inferred from mutant phenotype 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030673 // axolemma // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004965 // GABA-B receptor activity // inferred from direct assay /// 0004965 // GABA-B receptor activity // inferred from mutant phenotype /// 0004965 // GABA-B receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction 1369372_at NM_031028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031028.1 /DB_XREF=gi:13591941 /GEN=Gabbr1 /FEA=FLmRNA /CNT=2 /TID=Rn.30059.1 /TIER=FL /STK=2 /UG=Rn.30059 /LL=81657 /DEF=Rattus norvegicus gamma-aminobutyric acid (GABA) B receptor, 1 (Gabbr1), mRNA. /PROD=gamma-aminobutyric acid (GABA) B receptor, 1 /FL=gb:AB016161.1 gb:NM_031028.1 NM_031028 gamma-aminobutyric acid (GABA) B receptor 1 Gabbr1 81657 NM_031028 0001649 // osteoblast differentiation // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007194 // negative regulation of adenylate cyclase activity // inferred from direct assay /// 0007194 // negative regulation of adenylate cyclase activity // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0014048 // regulation of glutamate secretion // inferred from direct assay /// 0014053 // negative regulation of gamma-aminobutyric acid secretion // inferred from mutant phenotype /// 0030817 // regulation of cAMP biosynthetic process // inferred from direct assay /// 0032811 // negative regulation of epinephrine secretion // inferred from mutant phenotype /// 0033602 // negative regulation of dopamine secretion // inferred from direct assay /// 0035094 // response to nicotine // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0050805 // negative regulation of synaptic transmission // inferred from direct assay /// 0060124 // positive regulation of growth hormone secretion // inferred from mutant phenotype 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030673 // axolemma // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004965 // GABA-B receptor activity // inferred from direct assay /// 0004965 // GABA-B receptor activity // inferred from mutant phenotype /// 0004965 // GABA-B receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction 1369373_at NM_053429 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053429.1 /DB_XREF=gi:17865330 /GEN=Fgfr3 /FEA=FLmRNA /CNT=2 /TID=Rn.22911.1 /TIER=FL /STK=2 /UG=Rn.22911 /LL=84489 /DEF=Rattus norvegicus fibroblast growth factor receptor 3 (Fgfr3), mRNA. /PROD=fibroblast growth factor receptor 3 /FL=gb:NM_053429.1 gb:AF277717.1 NM_053429 fibroblast growth factor receptor 3 Fgfr3 84489 NM_053429 0000165 // MAPKKK cascade // not recorded /// 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0002009 // morphogenesis of an epithelium // not recorded /// 0002009 // morphogenesis of an epithelium // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007267 // cell-cell signaling // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from direct assay /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0031398 // positive regulation of protein ubiquitination // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // inferred from direct assay /// 0045597 // positive regulation of cell differentiation // not recorded /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045879 // negative regulation of smoothened signaling pathway // not recorded /// 0045879 // negative regulation of smoothened signaling pathway // inferred from electronic annotation /// 0048839 // inner ear development // not recorded /// 0048839 // inner ear development // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0051216 // cartilage development // not recorded /// 0051216 // cartilage development // inferred from electronic annotation /// 0060113 // inner ear receptor cell differentiation // not recorded /// 0060113 // inner ear receptor cell differentiation // inferred from electronic annotation /// 0090080 // positive regulation of MAPKKK cascade by fibroblast growth factor receptor signaling pathway // not recorded /// 0090080 // positive regulation of MAPKKK cascade by fibroblast growth factor receptor signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009898 // internal side of plasma membrane // not recorded /// 0009898 // internal side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005007 // fibroblast growth factor receptor activity // inferred from direct assay /// 0005007 // fibroblast growth factor receptor activity // inferred from electronic annotation /// 0005007 // fibroblast growth factor receptor activity // not recorded /// 0005007 // fibroblast growth factor receptor activity // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008083 // growth factor activity // non-traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // inferred from physical interaction /// 0017134 // fibroblast growth factor binding // not recorded /// 0042802 // identical protein binding // not recorded 1369374_at NM_013114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013114.1 /DB_XREF=gi:6981523 /GEN=Selp /FEA=FLmRNA /CNT=2 /TID=Rn.10012.1 /TIER=FL /STK=2 /UG=Rn.10012 /LL=25651 /DEF=Rattus norvegicus Selectin, platelet (Selp), mRNA. /PROD=selectin, platelet /FL=gb:L23088.1 gb:NM_013114.1 NM_013114 selectin P Selp 25651 NM_013114 0002687 // positive regulation of leukocyte migration // inferred from electronic annotation /// 0002687 // positive regulation of leukocyte migration // not recorded /// 0002691 // regulation of cellular extravasation // inferred from mutant phenotype /// 0006954 // inflammatory response // inferred from mutant phenotype /// 0006954 // inflammatory response // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007157 // heterophilic cell-cell adhesion // inferred from electronic annotation /// 0007157 // heterophilic cell-cell adhesion // not recorded /// 0007159 // leukocyte cell-cell adhesion // not recorded /// 0007159 // leukocyte cell-cell adhesion // inferred from electronic annotation /// 0010572 // positive regulation of platelet activation // inferred from electronic annotation /// 0010572 // positive regulation of platelet activation // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016337 // cell-cell adhesion // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0045785 // positive regulation of cell adhesion // inferred from mutant phenotype /// 0048514 // blood vessel morphogenesis // inferred from mutant phenotype /// 0050900 // leukocyte migration // inferred from mutant phenotype /// 0050901 // leukocyte tethering or rolling // inferred from electronic annotation /// 0050901 // leukocyte tethering or rolling // not recorded 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031088 // platelet dense granule membrane // not recorded /// 0031092 // platelet alpha granule membrane // inferred from electronic annotation /// 0031092 // platelet alpha granule membrane // not recorded 0001530 // lipopolysaccharide binding // inferred from electronic annotation /// 0001530 // lipopolysaccharide binding // not recorded /// 0001948 // glycoprotein binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded /// 0033691 // sialic acid binding // inferred from electronic annotation /// 0033691 // sialic acid binding // not recorded /// 0042806 // fucose binding // inferred from electronic annotation /// 0042806 // fucose binding // not recorded /// 0043499 // eukaryotic cell surface binding // inferred from mutant phenotype /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded /// 0070492 // oligosaccharide binding // inferred from electronic annotation /// 0070492 // oligosaccharide binding // not recorded 1369375_a_at AF052540 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF052540.1 /DB_XREF=gi:2970660 /FEA=FLmRNA /CNT=1 /TID=Rn.9726.6 /TIER=FL /STK=1 /UG=Rn.9726 /LL=29155 /UG_GENE=Capn3 /DEF=Rattus norvegicus calpain isoform Lp85 mRNA, complete cds. /PROD=calpain isoform Lp85 /FL=gb:AF052540.1 AF052540 calpain 3 Capn3 29155 NM_017117 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0030239 // myofibril assembly // not recorded /// 0030239 // myofibril assembly // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0045214 // sarcomere organization // inferred from electronic annotation /// 0045214 // sarcomere organization // not recorded /// 0051592 // response to calcium ion // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // inferred from direct assay /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // not recorded /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // traceable author statement /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1369376_a_at NM_133574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133574.1 /DB_XREF=gi:19424263 /GEN=Vp165 /FEA=FLmRNA /CNT=2 /TID=Rn.10614.1 /TIER=FL /STK=2 /UG=Rn.10614 /LL=171105 /DEF=Rattus norvegicus aminopeptidase Vp165 (Vp165), mRNA. /PROD=aminopeptidase Vp165 /FL=gb:U32990.1 gb:NM_133574.1 NM_133574 leucyl/cystinyl aminopeptidase Lnpep 171105 NM_001113403 /// NM_133574 0006508 // proteolysis // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from direct assay /// 0010813 // neuropeptide catabolic process // inferred from mutant phenotype /// 0030147 // natriuresis // inferred from direct assay /// 0030163 // protein catabolic process // not recorded /// 0043171 // peptide catabolic process // inferred from direct assay /// 0043171 // peptide catabolic process // inferred from mutant phenotype /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from mutant phenotype 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0032593 // insulin-responsive compartment // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043229 // intracellular organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded 0001595 // angiotensin receptor activity // inferred from mutant phenotype /// 0004177 // aminopeptidase activity // inferred from direct assay /// 0004177 // aminopeptidase activity // inferred from mutant phenotype /// 0004177 // aminopeptidase activity // not recorded /// 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation 1369377_at NM_013074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013074.1 /DB_XREF=gi:6981019 /GEN=Hcrtr2 /FEA=FLmRNA /CNT=2 /TID=Rn.9893.1 /TIER=FL /STK=2 /UG=Rn.9893 /LL=25605 /DEF=Rattus norvegicus Hypocretin (orexin) receptor 2 (Hcrtr2), mRNA. /PROD=hypocretin (orexin) receptor 2 /FL=gb:NM_013074.1 gb:AF041246.1 NM_013074 hypocretin (orexin) receptor 2 Hcrtr2 25605 NM_013074 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // not recorded /// 0007218 // neuropeptide signaling pathway // inferred from direct assay /// 0007631 // feeding behavior // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from direct assay /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0016499 // orexin receptor activity // inferred from direct assay /// 0016499 // orexin receptor activity // not recorded /// 0016499 // orexin receptor activity // traceable author statement /// 0016499 // orexin receptor activity // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred from direct assay 1369378_at NM_017316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017316.1 /DB_XREF=gi:8394383 /GEN=SVCT2 /FEA=FLmRNA /CNT=2 /TID=Rn.48660.1 /TIER=FL /STK=2 /UG=Rn.48660 /LL=50622 /DEF=Rattus norvegicus sodium-coupled ascorbic acid transporter 2 (SVCT2), mRNA. /PROD=sodium-coupled ascorbic acid transporter 2 /FL=gb:NM_017316.1 gb:AF080453.1 NM_017316 solute carrier family 23 (nucleobase transporters), member 2 Slc23a2 50622 NM_017316 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0015882 // L-ascorbic acid transport // inferred from direct assay /// 0015882 // L-ascorbic acid transport // inferred from mutant phenotype /// 0015882 // L-ascorbic acid transport // not recorded /// 0015882 // L-ascorbic acid transport // inferred from electronic annotation /// 0019852 // L-ascorbic acid metabolic process // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055085 // transmembrane transport // not recorded /// 0070904 // transepithelial L-ascorbic acid transport // inferred from electronic annotation /// 0070904 // transepithelial L-ascorbic acid transport // not recorded /// 0071436 // sodium ion export // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0009925 // basal plasma membrane // inferred from direct assay /// 0009925 // basal plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded 0005215 // transporter activity // inferred from direct assay /// 0005215 // transporter activity // inferred from electronic annotation /// 0008520 // L-ascorbate:sodium symporter activity // inferred from mutant phenotype /// 0008520 // L-ascorbate:sodium symporter activity // not recorded /// 0008520 // L-ascorbate:sodium symporter activity // traceable author statement /// 0008520 // L-ascorbate:sodium symporter activity // inferred from electronic annotation /// 0015229 // L-ascorbic acid transporter activity // inferred from direct assay /// 0015229 // L-ascorbic acid transporter activity // not recorded /// 0015229 // L-ascorbic acid transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0070890 // sodium-dependent L-ascorbate transmembrane transporter activity // inferred from electronic annotation /// 0070890 // sodium-dependent L-ascorbate transmembrane transporter activity // not recorded 1369379_at NM_031564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031564.1 /DB_XREF=gi:13928765 /GEN=Epha3 /FEA=FLmRNA /CNT=2 /TID=Rn.10713.1 /TIER=FL /STK=2 /UG=Rn.10713 /LL=29210 /DEF=Rattus norvegicus Eph receptor A3 (Epha3), mRNA. /PROD=Eph receptor A3 /FL=gb:NM_031564.1 gb:U69278.1 NM_031564 Eph receptor A3 Epha3 29210 NM_031564 0001660 // fever // inferred from expression pattern /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005003 // ephrin receptor activity // inferred from electronic annotation /// 0005003 // ephrin receptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1369380_at NM_134472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134472.2 /DB_XREF=gi:20428650 /GEN=KRP2 /FEA=FLmRNA /CNT=2 /TID=Affx.1.4 /TIER=FL /STK=2 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus kinesin-related protein 2 (KRP2), mRNA. /PROD=kinesin-related protein 2 /FL=gb:U44979.1 gb:NM_134472.2 NM_134472 kinesin family member 2C Kif2c 171529 NM_001085369 /// NM_134472 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007019 // microtubule depolymerization // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0030951 // establishment or maintenance of microtubule cytoskeleton polarity // not recorded /// 0051301 // cell division // inferred from electronic annotation /// 0051983 // regulation of chromosome segregation // not recorded 0000775 // chromosome, centromeric region // not recorded /// 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // not recorded /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // inferred from sequence or structural similarity /// 0015630 // microtubule cytoskeleton // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0051010 // microtubule plus-end binding // not recorded /// 0051010 // microtubule plus-end binding // inferred from sequence or structural similarity 1369381_a_at D50306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D50306.1 /DB_XREF=gi:1136775 /FEA=FLmRNA /CNT=1 /TID=Rn.10500.2 /TIER=FL /STK=1 /UG=Rn.10500 /LL=117261 /UG_GENE=Slc15a1 /DEF=Rat mRNA for proton-coupled dipeptide cotransporter, complete cds. /PROD=proton-coupled dipeptide cotransporter /FL=gb:D50306.1 D50306 solute carrier family 15 (oligopeptide transporter), member 1 Slc15a1 117261 NM_001079838 /// NM_057121 0006810 // transport // inferred from electronic annotation /// 0006857 // oligopeptide transport // not recorded /// 0006857 // oligopeptide transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0015833 // peptide transport // inferred from electronic annotation /// 0051956 // negative regulation of amino acid transport // inferred from direct assay /// 0055085 // transmembrane transport // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0005215 // transporter activity // inferred from electronic annotation /// 0005427 // proton-dependent oligopeptide secondary active transmembrane transporter activity // inferred from electronic annotation /// 0005427 // proton-dependent oligopeptide secondary active transmembrane transporter activity // not recorded /// 0015198 // oligopeptide transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0016248 // channel inhibitor activity // inferred from direct assay 1369382_at NM_022943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022943.1 /DB_XREF=gi:12738846 /GEN=Mertk /FEA=FLmRNA /CNT=2 /TID=Rn.48789.1 /TIER=FL /STK=2 /UG=Rn.48789 /LL=65037 /DEF=Rattus norvegicus MERTK (Mertk), mRNA. /PROD=MERTK /FL=gb:NM_022943.1 gb:AF208235.1 NM_022943 c-mer proto-oncogene tyrosine kinase Mertk 65037 NM_022943 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006909 // phagocytosis // inferred from direct assay /// 0006909 // phagocytosis // inferred from mutant phenotype /// 0007601 // visual perception // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0001750 // photoreceptor outer segment // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // non-traceable author statement /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1369383_a_at NM_023091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023091.1 /DB_XREF=gi:12831206 /GEN=Gabre /FEA=FLmRNA /CNT=2 /TID=Rn.54455.1 /TIER=FL /STK=2 /UG=Rn.54455 /LL=65191 /DEF=Rattus norvegicus gamma-aminobutyric acid (GABA-A) receptor, subunit epsilon (Gabre), mRNA. /PROD=gamma-aminobutyric acid (GABA-A) receptor,subunit epsilon /FL=gb:NM_023091.1 gb:AF189262.1 NM_023091 gamma-aminobutyric acid (GABA) A receptor, epsilon Gabre 65191 NM_023091 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // traceable author statement /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004890 // GABA-A receptor activity // inferred from direct assay /// 0004890 // GABA-A receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation 1369384_at NM_017263 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017263.1 /DB_XREF=gi:8393477 /GEN=Gria4 /FEA=FLmRNA /CNT=2 /TID=Rn.10938.1 /TIER=FL /STK=2 /UG=Rn.10938 /LL=29629 /DEF=Rattus norvegicus glutamate receptor, ionotropic, AMPA4 (alpha 4) (Gria4), mRNA. /PROD=glutamate receptor, ionotropic, AMPA4 (alpha 4) /FL=gb:NM_017263.1 gb:M85037.1 NM_017263 glutamate receptor, ionotropic, AMPA4 Gria4 29629 NM_001113184 /// NM_001113185 /// NM_017263 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from mutant phenotype /// 0007268 // synaptic transmission // traceable author statement /// 0050803 // regulation of synapse structure and activity // traceable author statement /// 0050804 // regulation of synaptic transmission // inferred from mutant phenotype /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype /// 0060992 // response to fungicide // inferred from expression pattern 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008328 // ionotropic glutamate receptor complex // traceable author statement /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0030425 // dendrite // inferred from mutant phenotype /// 0030666 // endocytic vesicle membrane // not recorded /// 0032281 // alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex // inferred from electronic annotation /// 0032281 // alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex // not recorded /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0045202 // synapse // inferred from mutant phenotype /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0004971 // alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity // inferred from mutant phenotype /// 0004971 // alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity // traceable author statement /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369385_at NM_080900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080900.1 /DB_XREF=gi:18266707 /GEN=Afap /FEA=FLmRNA /CNT=2 /TID=Rn.81202.1 /TIER=FL /STK=2 /UG=Rn.81202 /DEF=Rattus norvegicus actin filament associated protein (Afap), mRNA. /PROD=actin filament associated protein /FL=gb:AY063759.1 gb:NM_080900.1 NM_080900 actin filament associated protein 1 Afap1 140935 NM_080900 0007165 // signal transduction // non-traceable author statement /// 0009966 // regulation of signal transduction // inferred from direct assay /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // inferred from direct assay /// 0005925 // focal adhesion // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0042169 // SH2 domain binding // inferred from physical interaction 1369386_at NM_057127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057127.1 /DB_XREF=gi:16923977 /GEN=Slc26a2 /FEA=FLmRNA /CNT=2 /TID=Rn.14549.1 /TIER=FL /STK=2 /UG=Rn.14549 /LL=117267 /DEF=Rattus norvegicus solute carrier family 26 (sulfate transporter), member 2 (Slc26a2), mRNA. /PROD=solute carrier family 26 (sulfate transporter),member 2 /FL=gb:D82883.1 gb:NM_057127.1 NM_057127 solute carrier family 26 (sulfate transporter), member 2 Slc26a2 117267 NM_057127 0001503 // ossification // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0008272 // sulfate transport // inferred from direct assay /// 0008272 // sulfate transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0008271 // secondary active sulfate transmembrane transporter activity // inferred from electronic annotation /// 0015116 // sulfate transmembrane transporter activity // inferred from direct assay 1369387_at NM_012759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012759.1 /DB_XREF=gi:6981697 /GEN=Vav1 /FEA=FLmRNA /CNT=2 /TID=Rn.48861.1 /TIER=FL /STK=2 /UG=Rn.48861 /LL=25156 /DEF=Rattus norvegicus Vav 1 oncogene (Vav1), mRNA. /PROD=vav 1 oncogene /FL=gb:U39476.1 gb:NM_012759.1 NM_012759 vav 1 guanine nucleotide exchange factor Vav1 25156 NM_012759 0002768 // immune response-regulating cell surface receptor signaling pathway // inferred from expression pattern /// 0006909 // phagocytosis // not recorded /// 0006915 // apoptosis // not recorded /// 0006955 // immune response // not recorded /// 0007229 // integrin-mediated signaling pathway // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0042110 // T cell activation // not recorded /// 0043087 // regulation of GTPase activity // not recorded /// 0045785 // positive regulation of cell adhesion // not recorded /// 0048468 // cell development // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // traceable author statement /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030676 // Rac guanyl-nucleotide exchange factor activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1369388_at NM_031061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031061.1 /DB_XREF=gi:13592002 /GEN=Nsk1 /FEA=FLmRNA /CNT=2 /TID=Rn.10210.1 /TIER=FL /STK=2 /UG=Rn.10210 /LL=81725 /DEF=Rattus norvegicus Muscle specific kinase (neural foldsomite kinase 1) (Nsk1), mRNA. /PROD=muscle-specific tyrosine kinase receptor MuSK /FL=gb:NM_031061.1 gb:U34985.1 NM_031061 muscle, skeletal, receptor tyrosine kinase Musk 81725 NM_031061 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007528 // neuromuscular junction development // inferred from electronic annotation /// 0007528 // neuromuscular junction development // inferred from expression pattern /// 0007528 // neuromuscular junction development // not recorded /// 0007613 // memory // inferred from mutant phenotype /// 0008582 // regulation of synaptic growth at neuromuscular junction // not recorded /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0010629 // negative regulation of gene expression // inferred from direct assay /// 0014850 // response to muscle activity // inferred from expression pattern /// 0032224 // positive regulation of synaptic transmission, cholinergic // inferred from mutant phenotype /// 0043113 // receptor clustering // inferred from mutant phenotype /// 0043113 // receptor clustering // not recorded /// 0045887 // positive regulation of synaptic growth at neuromuscular junction // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0048678 // response to axon injury // inferred from expression pattern /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0051602 // response to electrical stimulus // inferred from mutant phenotype /// 0060041 // retina development in camera-type eye // inferred from expression pattern /// 0060291 // long-term synaptic potentiation // inferred from mutant phenotype /// 0071445 // cellular response to protein stimulus // inferred from expression pattern /// 0090102 // cochlea development // inferred from expression pattern 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from direct assay /// 0031594 // neuromuscular junction // not recorded /// 0042995 // cell projection // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0030165 // PDZ domain binding // not recorded 1369389_at NM_133422 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133422.1 /DB_XREF=gi:19173795 /GEN=HIT-10 /FEA=FLmRNA /CNT=2 /TID=Rn.64642.1 /TIER=FL /STK=2 /UG=Rn.64642 /LL=170955 /DEF=Rattus norvegicus zinc finger protein HIT-10 (HIT-10), mRNA. /PROD=zinc finger protein HIT-10 /FL=gb:NM_133422.1 gb:AF277901.1 NM_133422 zinc finger protein 483 Znf483 170955 NM_133422 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369390_a_at NM_022850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022850.1 /DB_XREF=gi:12408297 /GEN=Dpp6 /FEA=FLmRNA /CNT=2 /TID=Rn.10076.1 /TIER=FL /STK=2 /UG=Rn.10076 /LL=29272 /DEF=Rattus norvegicus dipeptidylpeptidase 6 (Dpp6), mRNA. /PROD=dipeptidylpeptidase 6 /FL=gb:NM_022850.1 gb:M76426.1 NM_022850 dipeptidylpeptidase 6 Dpp6 29272 NM_022850 0006508 // proteolysis // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008236 // serine-type peptidase activity // inferred from electronic annotation 1369391_at NM_022202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022202.1 /DB_XREF=gi:11559971 /GEN=Grm8 /FEA=FLmRNA /CNT=2 /TID=Rn.44420.1 /TIER=FL /STK=2 /UG=Rn.44420 /LL=60590 /DEF=Rattus norvegicus metabotropic glutamate receptor 8 (Grm8), mRNA. /PROD=metabotropic glutamate receptor 8 /FL=gb:NM_022202.1 gb:U63288.1 NM_022202 glutamate receptor, metabotropic 8 Grm8 60590 NM_022202 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007196 // inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway // not recorded /// 0007196 // inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway // traceable author statement /// 0007268 // synaptic transmission // inferred from direct assay /// 0007268 // synaptic transmission // non-traceable author statement /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0019233 // sensory perception of pain // traceable author statement /// 0030818 // negative regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0030818 // negative regulation of cAMP biosynthetic process // not recorded /// 0035249 // synaptic transmission, glutamatergic // inferred from direct assay /// 0043526 // neuroprotection // traceable author statement /// 0046928 // regulation of neurotransmitter secretion // inferred from direct assay /// 0050896 // response to stimulus // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045211 // postsynaptic membrane // traceable author statement 0001642 // group III metabotropic glutamate receptor activity // inferred from direct assay /// 0001642 // group III metabotropic glutamate receptor activity // not recorded /// 0001642 // group III metabotropic glutamate receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1369392_at NM_024402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024402.1 /DB_XREF=gi:13242319 /GEN=Akap4 /FEA=FLmRNA /CNT=2 /TID=Rn.10777.1 /TIER=FL /STK=2 /UG=Rn.10777 /LL=79254 /DEF=Rattus norvegicus 75 kDa fibrous sheath protein (Akap4), mRNA. /PROD=75 kDa fibrous sheath protein /FL=gb:NM_024402.1 gb:AF008114.1 NM_024402 A kinase (PRKA) anchor protein 4 Akap4 79254 NM_024402 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // inferred from electronic annotation /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // not recorded /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0030030 // cell projection organization // inferred from electronic annotation /// 0030317 // sperm motility // not recorded /// 0030317 // sperm motility // inferred from sequence or structural similarity /// 0030317 // sperm motility // inferred from electronic annotation 0005929 // cilium // inferred from electronic annotation /// 0009434 // microtubule-based flagellum // not recorded /// 0009434 // microtubule-based flagellum // inferred from sequence or structural similarity /// 0009434 // microtubule-based flagellum // inferred from electronic annotation /// 0019861 // flagellum // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0051018 // protein kinase A binding // not recorded /// 0051018 // protein kinase A binding // inferred from sequence or structural similarity /// 0051018 // protein kinase A binding // inferred from electronic annotation 1369393_at NM_053847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053847.1 /DB_XREF=gi:16758707 /GEN=Map3k8 /FEA=FLmRNA /CNT=2 /TID=Rn.9939.1 /TIER=FL /STK=2 /UG=Rn.9939 /LL=116596 /DEF=Rattus norvegicus itogen-activated protein kinase kinase kinase 8 (Map3k8), mRNA. /PROD=itogen-activated protein kinase kinase kinase 8 /FL=gb:NM_053847.1 gb:M94454.1 NM_053847 mitogen-activated protein kinase kinase kinase 8 Map3k8 116596 NM_053847 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004709 // MAP kinase kinase kinase activity // not recorded /// 0004709 // MAP kinase kinase kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369394_at NM_022206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022206.1 /DB_XREF=gi:11559979 /GEN=Unc5h1 /FEA=FLmRNA /CNT=2 /TID=Rn.44433.1 /TIER=FL /STK=2 /UG=Rn.44433 /LL=60629 /DEF=Rattus norvegicus transmembrane receptor Unc5H1 (Unc5h1), mRNA. /PROD=transmembrane receptor Unc5H1 /FL=gb:U87305.1 gb:NM_022206.1 NM_022206 unc-5 homolog A (C. elegans) Unc5a 60629 NM_022206 0006915 // apoptosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // inferred from direct assay 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005042 // netrin receptor activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation 1369395_at NM_022625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022625.2 /DB_XREF=gi:15100152 /GEN=AF078811 /FEA=FLmRNA /CNT=2 /TID=Rn.48739.1 /TIER=FL /STK=2 /UG=Rn.48739 /LL=64560 /DEF=Rattus norvegicus tropic 1808 (AF078811), mRNA. /PROD=tropic 1808 /FL=gb:AF078811.2 gb:NM_022625.2 NM_022625 tropic 1808 Tpc1808 64560 NM_022625 0009253 // peptidoglycan catabolic process // inferred from electronic annotation /// 0016998 // cell wall macromolecule catabolic process // inferred from electronic annotation 0004040 // amidase activity // inferred from electronic annotation 1369396_at NM_023095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023095.1 /DB_XREF=gi:12831212 /GEN=Mgat5 /FEA=FLmRNA /CNT=2 /TID=Rn.53998.1 /TIER=FL /STK=2 /UG=Rn.53998 /LL=65271 /DEF=Rattus norvegicus N-acetylglucosaminyltransferase V (Mgat5), mRNA. /PROD=N-acetylglucosaminyltransferase V /FL=gb:NM_023095.1 gb:L14284.1 NM_023095 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase Mgat5 65271 NM_023095 0006487 // protein N-linked glycosylation // inferred from electronic annotation /// 0006487 // protein N-linked glycosylation // not recorded /// 0008152 // metabolic process // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008375 // acetylglucosaminyltransferase activity // not recorded /// 0008375 // acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030144 // alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity // inferred from electronic annotation 1369397_at NM_130818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130818.1 /DB_XREF=gi:18677746 /GEN=Tas1r3 /FEA=FLmRNA /CNT=2 /TID=Rn.81025.1 /TIER=FL /STK=2 /UG=Rn.81025 /DEF=Rattus norvegicus taste receptor, type 1, member 3 (Tas1r3), mRNA. /PROD=taste receptor, type 1, member 3 /FL=gb:AY032620.1 gb:NM_130818.1 NM_130818 taste receptor, type 1, member 3 Tas1r3 170634 NM_130818 0001582 // detection of chemical stimulus involved in sensory perception of sweet taste // not recorded /// 0001582 // detection of chemical stimulus involved in sensory perception of sweet taste // traceable author statement /// 0001582 // detection of chemical stimulus involved in sensory perception of sweet taste // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from electronic annotation /// 0050916 // sensory perception of sweet taste // inferred from direct assay /// 0050916 // sensory perception of sweet taste // not recorded /// 0050916 // sensory perception of sweet taste // inferred from electronic annotation /// 0050917 // sensory perception of umami taste // inferred from direct assay /// 0050917 // sensory perception of umami taste // not recorded /// 0050917 // sensory perception of umami taste // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred by curator /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0008527 // taste receptor activity // inferred from direct assay /// 0008527 // taste receptor activity // not recorded /// 0008527 // taste receptor activity // inferred from electronic annotation /// 0033041 // sweet taste receptor activity // inferred from electronic annotation /// 0033041 // sweet taste receptor activity // not recorded 1369398_at NM_031759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031759.1 /DB_XREF=gi:13929069 /GEN=Naaladasel /FEA=FLmRNA /CNT=2 /TID=Rn.10856.1 /TIER=FL /STK=2 /UG=Rn.10856 /LL=83568 /DEF=Rattus norvegicus N-acetylated alpha-linked acidic dipeptidase-like (ileal peptidase I100) (Naaladasel), mRNA. /PROD=N-acetylated alpha-linked acidicdipeptidase-like (ileal peptidase I100) /FL=gb:AF009921.1 gb:NM_031759.1 NM_031759 N-acetylated alpha-linked acidic dipeptidase-like 1 Naaladl1 83568 NM_031759 0006508 // proteolysis // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016805 // dipeptidase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369399_at NM_012845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012845.1 /DB_XREF=gi:6978834 /GEN=Ms4a1 /FEA=FLmRNA /CNT=2 /TID=Rn.10922.1 /TIER=FL /STK=2 /UG=Rn.10922 /LL=25316 /DEF=Rattus norvegicus membrane-spanning 4-domains, subfamily A, member 1 (Ms4a1), mRNA. /PROD=membrane-spanning 4-domains, subfamily A, member1 /FL=gb:NM_012845.1 gb:M22923.1 NM_012845 membrane-spanning 4-domains, subfamily A, member 2 (Fc fragment of IgE, high affinity I, receptor for; beta polypeptide) Ms4a2 25316 NM_012845 0006954 // inflammatory response // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007202 // activation of phospholipase C activity // inferred from direct assay /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0043306 // positive regulation of mast cell degranulation // inferred from mutant phenotype /// 0050663 // cytokine secretion // inferred from genetic interaction /// 0051279 // regulation of release of sequestered calcium ion into cytosol // inferred from genetic interaction 0005768 // endosome // inferred from direct assay /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032998 // Fc-epsilon receptor I complex // inferred from electronic annotation /// 0032998 // Fc-epsilon receptor I complex // not recorded /// 0045121 // membrane raft // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0019767 // IgE receptor activity // inferred from direct assay /// 0019863 // IgE binding // not recorded /// 0019863 // IgE binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0042169 // SH2 domain binding // inferred from direct assay /// 0051219 // phosphoprotein binding // inferred from physical interaction 1369400_a_at NM_080477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080477.1 /DB_XREF=gi:17978450 /GEN=Pfkfb2 /FEA=FLmRNA /CNT=2 /TID=Rn.10919.1 /TIER=FL /STK=2 /UG=Rn.10919 /LL=24640 /DEF=Rattus norvegicus 6-Phosphofructo-2-kinasefructose-2,6-bisphosphatase 2 (heart) (Pfkfb2), mRNA. /PROD=6-Phosphofructo-2-kinasefructose-2,6-bisphosphatase 2 (heart) (conflicting physicalmapping) /FL=gb:NM_080477.1 gb:AB040530.1 NM_080477 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 Pfkfb2 24640 NM_001033964 /// NM_001033965 /// NM_080477 0006000 // fructose metabolic process // inferred from electronic annotation /// 0006003 // fructose 2,6-bisphosphate metabolic process // traceable author statement /// 0006003 // fructose 2,6-bisphosphate metabolic process // inferred from electronic annotation /// 0006007 // glucose catabolic process // inferred from direct assay /// 0006089 // lactate metabolic process // inferred from direct assay /// 0006090 // pyruvate metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from direct assay /// 0032024 // positive regulation of insulin secretion // inferred from direct assay /// 0033133 // positive regulation of glucokinase activity // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003873 // 6-phosphofructo-2-kinase activity // traceable author statement /// 0003873 // 6-phosphofructo-2-kinase activity // inferred from electronic annotation /// 0004331 // fructose-2,6-bisphosphate 2-phosphatase activity // traceable author statement /// 0004331 // fructose-2,6-bisphosphate 2-phosphatase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019900 // kinase binding // inferred from physical interaction 1369401_at NM_130736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130736.1 /DB_XREF=gi:18543334 /GEN=Slc21a13 /FEA=FLmRNA /CNT=2 /TID=Rn.48761.1 /TIER=FL /STK=2 /UG=Rn.48761 /LL=84608 /DEF=Rattus norvegicus solute carrier family (organic anion transporter) member 13 (Slc21a13), mRNA. /PROD=kidney-specific organic anion transportingpolypeptide 5 /FL=gb:NM_130736.1 gb:AF053317.2 NM_130736 solute carrier organic anion transporter family, member 1a6 Slco1a6 84608 NM_130736 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from expression pattern 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1369402_at NM_022681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022681.1 /DB_XREF=gi:12083624 /GEN=Adnp /FEA=FLmRNA /CNT=2 /TID=Rn.48777.1 /TIER=FL /STK=2 /UG=Rn.48777 /LL=64622 /DEF=Rattus norvegicus activity-dependent neuroprotective protein (Adnp), mRNA. /PROD=activity-dependent neuroprotective protein /FL=gb:NM_022681.1 gb:AF234680.1 NM_022681 activity-dependent neuroprotector homeobox Adnp 64622 NM_022681 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007614 // short-term memory // inferred from direct assay /// 0009743 // response to carbohydrate stimulus // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010629 // negative regulation of gene expression // inferred from direct assay /// 0010835 // regulation of protein ADP-ribosylation // inferred from direct assay /// 0010976 // positive regulation of neuron projection development // inferred from direct assay /// 0030828 // positive regulation of cGMP biosynthetic process // inferred from direct assay /// 0031668 // cellular response to extracellular stimulus // inferred from expression pattern /// 0032091 // negative regulation of protein binding // inferred from direct assay /// 0032147 // activation of protein kinase activity // inferred from direct assay /// 0033484 // nitric oxide homeostasis // inferred from direct assay /// 0043524 // negative regulation of neuron apoptosis // inferred from direct assay /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043526 // neuroprotection // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045773 // positive regulation of axon extension // inferred from direct assay /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050805 // negative regulation of synaptic transmission // inferred from mutant phenotype /// 0051965 // positive regulation of synaptogenesis // inferred from direct assay /// 0060206 // estrous cycle phase // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // inferred from physical interaction 1369403_at NM_012897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012897.1 /DB_XREF=gi:6978466 /GEN=Adrbk2 /FEA=FLmRNA /CNT=2 /TID=Rn.9861.1 /TIER=FL /STK=2 /UG=Rn.9861 /LL=25372 /DEF=Rattus norvegicus Adrenergic receptor kinase, beta 2 (G-protein-linked receptor kinase) (Adrbk2), mRNA. /PROD=adrenergic receptor kinase, beta 2(G-protein-linked receptor kinase) /FL=gb:NM_012897.1 gb:M87855.1 NM_012897 adrenergic, beta, receptor kinase 2 Adrbk2 25372 NM_012897 0002029 // desensitization of G-protein coupled receptor protein signaling pathway // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0016310 // phosphorylation // inferred from electronic annotation /// 0045744 // negative regulation of G-protein coupled receptor protein signaling pathway // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004703 // G-protein coupled receptor kinase activity // inferred from electronic annotation /// 0004703 // G-protein coupled receptor kinase activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0031698 // beta-2 adrenergic receptor binding // traceable author statement /// 0047696 // beta-adrenergic receptor kinase activity // inferred from electronic annotation 1369404_a_at NM_021767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021767.1 /DB_XREF=gi:11120721 /GEN=Nrxn1b /FEA=FLmRNA /CNT=2 /TID=Rn.54924.1 /TIER=FL /STK=2 /UG=Rn.54924 /LL=60391 /DEF=Rattus norvegicus non-processed neurexin I-beta (Nrxn1b), mRNA. /PROD=non-processed neurexin I-beta /FL=gb:M96375.1 gb:NM_021767.1 NM_021767 neurexin 1 Nrxn1 60391 NM_021767 0007155 // cell adhesion // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007269 // neurotransmitter secretion // not recorded /// 0007416 // synapse assembly // not recorded /// 0051290 // protein heterotetramerization // inferred from direct assay 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042734 // presynaptic membrane // not recorded 0005246 // calcium channel regulator activity // not recorded /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1369405_a_at X15834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X15834.1 /DB_XREF=gi:56759 /GEN=nAChR /FEA=mRNA /CNT=1 /TID=Rn.9695.2 /TIER=ConsEnd /STK=0 /UG=Rn.9695 /LL=25103 /DEF=R.norvegicus mRNA for muscle like nicotinic acetylcholine receptor (nAChR) subunit. /PROD=neuronal nonacetlycholine binding subunit X15834 cholinergic receptor, nicotinic, beta 4 Chrnb4 25103 NM_052806 0001508 // regulation of action potential // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006939 // smooth muscle contraction // not recorded /// 0006940 // regulation of smooth muscle contraction // not recorded /// 0007165 // signal transduction // not recorded /// 0007626 // locomotory behavior // not recorded /// 0035094 // response to nicotine // not recorded /// 0035095 // behavioral response to nicotine // not recorded /// 0042391 // regulation of membrane potential // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0060084 // synaptic transmission involved in micturition // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from direct assay /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // not recorded /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred by curator /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0015464 // acetylcholine receptor activity // not recorded /// 0042166 // acetylcholine binding // inferred from direct assay 1369406_at NM_053646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053646.1 /DB_XREF=gi:16758457 /GEN=Asah2 /FEA=FLmRNA /CNT=2 /TID=Rn.81031.1 /TIER=FL /STK=2 /UG=Rn.81031 /LL=114104 /DEF=Rattus norvegicus N-acylsphingosine amidohydrolase 2 (Asah2), mRNA. /PROD=N-acylsphingosine amidohydrolase 2 /FL=gb:NM_053646.1 gb:AB057433.1 NM_053646 N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 Asah2 114104 NM_053646 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0010033 // response to organic substance // inferred from direct assay 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation /// 0017040 // ceramidase activity // inferred from electronic annotation /// 0017040 // ceramidase activity // not recorded 1369407_at NM_012870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012870.1 /DB_XREF=gi:6981305 /GEN=Tnfrsf11b /FEA=FLmRNA /CNT=2 /TID=Rn.9792.1 /TIER=FL /STK=2 /UG=Rn.9792 /LL=25341 /DEF=Rattus norvegicus tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin) (Tnfrsf11b), mRNA. /PROD=tumor necrosis factor receptor superfamily,member 11b (osteoprotegerin) /FL=gb:U94330.1 gb:NM_012870.1 NM_012870 tumor necrosis factor receptor superfamily, member 11b Tnfrsf11b 25341 NM_012870 0006915 // apoptosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0032026 // response to magnesium ion // inferred from expression pattern /// 0042489 // negative regulation of odontogenesis of dentine-containing tooth // inferred from expression pattern /// 0042489 // negative regulation of odontogenesis of dentine-containing tooth // not recorded /// 0042489 // negative regulation of odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045671 // negative regulation of osteoclast differentiation // traceable author statement /// 0045779 // negative regulation of bone resorption // inferred from direct assay /// 0045779 // negative regulation of bone resorption // inferred from mutant phenotype /// 0046685 // response to arsenic // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005615 // extracellular space // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1369408_at NM_080482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080482.1 /DB_XREF=gi:17978460 /GEN=LOC140610 /FEA=FLmRNA /CNT=2 /TID=Rn.81193.1 /TIER=FL /STK=2 /UG=Rn.81193 /LL=140610 /DEF=Rattus norvegicus BMPretinoic acid-inducible neural-specific protein (LOC140610), mRNA. /PROD=BMPretinoic acid-inducible neural-specificprotein /FL=gb:AB051356.1 gb:NM_080482.1 NM_080482 deleted in bladder cancer 1 (human) Dbc1 140610 NM_080482 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0008219 // cell death // not recorded /// 0008219 // cell death // inferred from sequence or structural similarity /// 0008219 // cell death // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // not recorded /// 0045786 // negative regulation of cell cycle // inferred from sequence or structural similarity /// 0045786 // negative regulation of cell cycle // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369409_at NM_022856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022856.1 /DB_XREF=gi:12408307 /GEN=Nab1 /FEA=FLmRNA /CNT=2 /TID=Rn.10099.1 /TIER=FL /STK=2 /UG=Rn.10099 /LL=64824 /DEF=Rattus norvegicus Ngfi-A binding protein 1 (Nab1), mRNA. /PROD=Ngfi-A binding protein 1 /FL=gb:U17253.1 gb:NM_022856.1 NM_022856 Ngfi-A binding protein 1 Nab1 64824 NM_022856 0001958 // endochondral ossification // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0014037 // Schwann cell differentiation // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0042552 // myelination // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045682 // regulation of epidermis development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0016564 // transcription repressor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded 1369410_at NM_053584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053584.1 /DB_XREF=gi:16758357 /GEN=Gosr1 /FEA=FLmRNA /CNT=2 /TID=Rn.6390.1 /TIER=FL /STK=2 /UG=Rn.6390 /LL=94189 /DEF=Rattus norvegicus golgi SNAP receptor complex member 1 (Gosr1), mRNA. /PROD=golgi SNAP receptor complex member 1 /FL=gb:NM_053584.1 gb:U49099.1 NM_053584 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005801 // cis-Golgi network // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0005484 // SNAP receptor activity // inferred from electronic annotation 1369411_at NM_012566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012566.1 /DB_XREF=gi:6978885 /GEN=Gfi1 /FEA=FLmRNA /CNT=2 /TID=Rn.10935.1 /TIER=FL /STK=2 /UG=Rn.10935 /LL=24388 /DEF=Rattus norvegicus Growth factor independent-1 (Gfi1), mRNA. /PROD=growth factor independent-1 /FL=gb:L06986.1 gb:NM_012566.1 NM_012566 growth factor independent 1 transcription repressor Gfi1 24388 NM_012566 0006350 // transcription // inferred from electronic annotation /// 0007638 // mechanosensory behavior // not recorded /// 0009996 // negative regulation of cell fate specification // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010956 // negative regulation of calcidiol 1-monooxygenase activity // inferred from electronic annotation /// 0010956 // negative regulation of calcidiol 1-monooxygenase activity // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0042491 // auditory receptor cell differentiation // not recorded /// 0042660 // positive regulation of cell fate specification // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1369412_a_at NM_017299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017299.1 /DB_XREF=gi:8394282 /GEN=Slc19a1 /FEA=FLmRNA /CNT=2 /TID=Rn.9042.1 /TIER=FL /STK=2 /UG=Rn.9042 /LL=29723 /DEF=Rattus norvegicus solute carrier family 19 (sodiumhydrogen exchanger), member 1 (Slc19a1), mRNA. /PROD=solute carrier family 19 (sodiumhydrogenexchanger), member 1 /FL=gb:NM_017299.1 gb:U38180.1 NM_017299 solute carrier family 19 (folate transporter), member 1 Slc19a1 29723 NM_001035232 /// NM_017299 0006810 // transport // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from expression pattern /// 0015884 // folic acid transport // inferred from direct assay 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay 0005542 // folic acid binding // inferred from direct assay /// 0005542 // folic acid binding // inferred from electronic annotation /// 0008518 // reduced folate carrier activity // inferred from direct assay /// 0008518 // reduced folate carrier activity // inferred from electronic annotation /// 0015350 // methotrexate transporter activity // inferred from direct assay 1369413_at NM_017179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017179.1 /DB_XREF=gi:8393132 /GEN=Chx4 /FEA=FLmRNA /CNT=2 /TID=Rn.10710.1 /TIER=FL /STK=2 /UG=Rn.10710 /LL=29375 /DEF=Rattus norvegicus Unc4.1 homeobox (C. elegans) (Chx4), mRNA. /PROD=Unc4.1 homeobox (C. elegans) /FL=gb:NM_017179.1 gb:D87748.1 NM_017179 UNC homeobox Uncx 29375 NM_017179 0001502 // cartilage condensation // inferred from electronic annotation /// 0001502 // cartilage condensation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0021516 // dorsal spinal cord development // inferred from electronic annotation /// 0021516 // dorsal spinal cord development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1369414_at NM_053637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053637.1 /DB_XREF=gi:16758989 /GEN=Stxbp3 /FEA=FLmRNA /CNT=2 /TID=Rn.64627.1 /TIER=FL /STK=2 /UG=Rn.64627 /LL=114095 /DEF=Rattus norvegicus syntaxin binding protein 3 (Stxbp3), mRNA. /PROD=syntaxin binding protein 3 /FL=gb:NM_053637.1 gb:AB046544.1 NM_053637 syntaxin binding protein 3 Stxbp3 114095 NM_053637 0006887 // exocytosis // not recorded /// 0006904 // vesicle docking involved in exocytosis // traceable author statement /// 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0015758 // glucose transport // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0022615 // protein to membrane docking // not recorded /// 0030073 // insulin secretion // not recorded /// 0032868 // response to insulin stimulus // not recorded /// 0043312 // neutrophil degranulation // inferred from electronic annotation /// 0043312 // neutrophil degranulation // not recorded /// 0045955 // negative regulation of calcium ion-dependent exocytosis // inferred from electronic annotation /// 0045955 // negative regulation of calcium ion-dependent exocytosis // not recorded /// 0051291 // protein heterooligomerization // inferred from physical interaction /// 0070527 // platelet aggregation // inferred from electronic annotation /// 0070527 // platelet aggregation // not recorded 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0031091 // platelet alpha granule // inferred from electronic annotation /// 0031091 // platelet alpha granule // not recorded /// 0042581 // specific granule // inferred from electronic annotation /// 0042581 // specific granule // not recorded /// 0070820 // tertiary granule // inferred from electronic annotation /// 0070820 // tertiary granule // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017075 // syntaxin-1 binding // inferred from direct assay /// 0019905 // syntaxin binding // inferred from physical interaction /// 0019905 // syntaxin binding // not recorded /// 0019905 // syntaxin binding // inferred from electronic annotation /// 0030347 // syntaxin-2 binding // inferred from electronic annotation /// 0030347 // syntaxin-2 binding // not recorded 1369415_at NM_053328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053328.1 /DB_XREF=gi:16758031 /GEN=Bhlhb2 /FEA=FLmRNA /CNT=2 /TID=Rn.81055.1 /TIER=FL /STK=2 /UG=Rn.81055 /LL=79431 /DEF=Rattus norvegicus basic helix-loop-helix domain containing, class B2 (Bhlhb2), mRNA. /PROD=basic helix-loop-helix domain containing, classB2 /FL=gb:NM_053328.1 gb:AF009330.1 NM_053328 basic helix-loop-helix family, member e40 Bhlhe40 79431 NM_053328 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007399 // nervous system development // non-traceable author statement /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0007623 // circadian rhythm // not recorded /// 0009416 // response to light stimulus // inferred from electronic annotation /// 0009416 // response to light stimulus // not recorded /// 0009649 // entrainment of circadian clock // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0048168 // regulation of neuronal synaptic plasticity // inferred from expression pattern /// 0048168 // regulation of neuronal synaptic plasticity // non-traceable author statement 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // inferred from mutant phenotype /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1369416_at NM_053685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053685.1 /DB_XREF=gi:16758501 /GEN=Hcn3 /FEA=FLmRNA /CNT=2 /TID=Rn.48801.1 /TIER=FL /STK=2 /UG=Rn.48801 /LL=114245 /DEF=Rattus norvegicus hyperpolarization-activated, cyclic nucleotide-gated potassium channel 3 (Hcn3), mRNA. /PROD=hyperpolarization-activated, cyclicnucleotide-gated potassium channel 3 /FL=gb:NM_053685.1 gb:AF247452.1 NM_053685 hyperpolarization-activated cyclic nucleotide-gated potassium channel 3 Hcn3 114245 NM_053685 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030552 // cAMP binding // inferred from electronic annotation 1369417_a_at NM_053848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053848.1 /DB_XREF=gi:16758709 /GEN=Opcml /FEA=FLmRNA /CNT=2 /TID=Rn.11366.1 /TIER=FL /STK=2 /UG=Rn.11366 /LL=116597 /DEF=Rattus norvegicus opioid-binding proteincell adhesion molecule-like (Opcml), mRNA. /PROD=opioid-binding proteincell adhesionmolecule-like /FL=gb:NM_053848.1 gb:M88711.1 NM_053848 opioid binding protein/cell adhesion molecule-like Opcml 116597 NM_053848 0007155 // cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 1369418_at NM_053834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053834.1 /DB_XREF=gi:16758687 /GEN=Kcnj9 /FEA=FLmRNA /CNT=2 /TID=Rn.10274.1 /TIER=FL /STK=2 /UG=Rn.10274 /LL=116560 /DEF=Rattus norvegicus potassium inwardly-rectifying channel, subfamily J, member 9 (Kcnj9), mRNA. /PROD=potassium inwardly-rectifying channel, subfamilyJ, member 9 /FL=gb:NM_053834.1 gb:L77929.1 NM_053834 potassium inwardly-rectifying channel, subfamily J, member 9 Kcnj9 116560 NM_053834 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015467 // G-protein activated inward rectifier potassium channel activity // inferred from electronic annotation 1369419_at NM_134396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134396.1 /DB_XREF=gi:19705514 /GEN=Smhs2 /FEA=FLmRNA /CNT=2 /TID=Rn.64644.1 /TIER=FL /STK=2 /UG=Rn.64644 /LL=171433 /DEF=Rattus norvegicus Smhs2 protein (Smhs2), mRNA. /PROD=Smhs2 protein /FL=gb:AF327513.1 gb:NM_134396.1 NM_134396 EF-hand domain family, member A1 Efha1 171433 NM_134396 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005509 // calcium ion binding // inferred from electronic annotation 1369420_at NM_054010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_054010.1 /DB_XREF=gi:16758931 /GEN=Neu3 /FEA=FLmRNA /CNT=2 /TID=Rn.67067.1 /TIER=FL /STK=2 /UG=Rn.67067 /LL=117185 /DEF=Rattus norvegicus neuraminidase 3 (Neu3), mRNA. /PROD=neuraminidase 3 /FL=gb:NM_054010.1 gb:AB026841.1 NM_054010 sialidase 3 (membrane sialidase) Neu3 117185 NM_054010 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004308 // exo-alpha-sialidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0016997 // alpha-sialidase activity // not recorded /// 0016997 // alpha-sialidase activity // inferred from electronic annotation 1369421_at NM_022615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022615.1 /DB_XREF=gi:12018293 /GEN=Top1 /FEA=FLmRNA /CNT=2 /TID=Rn.48698.1 /TIER=FL /STK=2 /UG=Rn.48698 /LL=64550 /DEF=Rattus norvegicus DNA topoisomerase I (Top1), mRNA. /PROD=DNA topoisomerase I /FL=gb:AF140782.1 gb:NM_022615.1 NM_022615 topoisomerase (DNA) I Top1 64550 NM_022615 0006260 // DNA replication // not recorded /// 0006265 // DNA topological change // inferred from direct assay /// 0006265 // DNA topological change // not recorded /// 0006265 // DNA topological change // inferred from electronic annotation /// 0006268 // DNA unwinding involved in replication // inferred from electronic annotation /// 0009266 // response to temperature stimulus // inferred from expression pattern /// 0009303 // rRNA transcription // inferred from mutant phenotype /// 0031100 // organ regeneration // inferred from expression pattern /// 0033554 // cellular response to stress // inferred from expression pattern /// 0040016 // embryonic cleavage // not recorded /// 0042493 // response to drug // not recorded /// 0051591 // response to cAMP // inferred from expression pattern /// 0071373 // cellular response to luteinizing hormone stimulus // inferred from expression pattern 0000228 // nuclear chromosome // not recorded /// 0001651 // dense fibrillar component // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0043204 // perikaryon // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003916 // DNA topoisomerase activity // inferred from electronic annotation /// 0003917 // DNA topoisomerase type I activity // inferred from direct assay /// 0003917 // DNA topoisomerase type I activity // not recorded /// 0003917 // DNA topoisomerase type I activity // inferred from electronic annotation /// 0003918 // DNA topoisomerase (ATP-hydrolyzing) activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0031490 // chromatin DNA binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from direct assay 1369422_at NM_138850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_138850.1 /DB_XREF=gi:20301993 /GEN=Fap /FEA=FLmRNA /CNT=2 /TID=Affx.1.5 /TIER=FL /STK=2 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus fibroblast activation protein (Fap), mRNA. /PROD=fibroblast activation protein /FL=gb:AF493782.1 gb:NM_138850.1 NM_138850 fibroblast activation protein, alpha Fap 192203 NM_138850 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0010716 // negative regulation of extracellular matrix disassembly // inferred from electronic annotation /// 0010716 // negative regulation of extracellular matrix disassembly // not recorded /// 0043542 // endothelial cell migration // inferred from electronic annotation /// 0043542 // endothelial cell migration // not recorded 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008236 // serine-type peptidase activity // not recorded /// 0008236 // serine-type peptidase activity // inferred from electronic annotation 1369423_at NM_017109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017109.1 /DB_XREF=gi:8394388 /GEN=Syn3 /FEA=FLmRNA /CNT=2 /TID=Rn.14525.1 /TIER=FL /STK=2 /UG=Rn.14525 /LL=29130 /DEF=Rattus norvegicus synapsin 3 (Syn3), mRNA. /PROD=synapsin 3 /FL=gb:NM_017109.1 gb:AF056704.1 NM_017109 synapsin III Syn3 29130 NM_017109 0007269 // neurotransmitter secretion // traceable author statement /// 0007269 // neurotransmitter secretion // inferred from electronic annotation 0008021 // synaptic vesicle // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation 1369424_at NM_012693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012693.1 /DB_XREF=gi:6978740 /GEN=Cyp2a2 /FEA=FLmRNA /CNT=2 /TID=Rn.9867.1 /TIER=FL /STK=2 /UG=Rn.9867 /LL=24895 /DEF=Rattus norvegicus Cytochrome P450 IIA2 (Cyp2a2), mRNA. /PROD=cytochrome P450 IIA2 /FL=gb:J04187.1 gb:NM_012693.1 NM_012693 cytochrome P450, family 2, subfamily a, polypeptide 2 Cyp2a2 24895 NM_012693 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008395 // steroid hydroxylase activity // inferred from direct assay /// 0008395 // steroid hydroxylase activity // traceable author statement /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1369425_at NM_138889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_138889.1 /DB_XREF=gi:20302072 /GEN=Cdh13 /FEA=FLmRNA /CNT=2 /TID=Affx.1.6 /TIER=FL /STK=2 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus cadherin 13 (Cdh13), mRNA. /PROD=cadherin 13 /FL=gb:AF494095.1 gb:NM_138889.1 NM_138889 cadherin 13 Cdh13 192248 NM_138889 0000278 // mitotic cell cycle // inferred from expression pattern /// 0001558 // regulation of cell growth // inferred from mutant phenotype /// 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0001954 // positive regulation of cell-matrix adhesion // inferred from electronic annotation /// 0001954 // positive regulation of cell-matrix adhesion // not recorded /// 0002040 // sprouting angiogenesis // inferred from electronic annotation /// 0002040 // sprouting angiogenesis // not recorded /// 0007155 // cell adhesion // non-traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // not recorded /// 0007162 // negative regulation of cell adhesion // inferred from electronic annotation /// 0007162 // negative regulation of cell adhesion // not recorded /// 0007266 // Rho protein signal transduction // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0016337 // cell-cell adhesion // traceable author statement /// 0016339 // calcium-dependent cell-cell adhesion // inferred from electronic annotation /// 0016339 // calcium-dependent cell-cell adhesion // not recorded /// 0016601 // Rac protein signal transduction // inferred from electronic annotation /// 0016601 // Rac protein signal transduction // not recorded /// 0030032 // lamellipodium assembly // inferred from electronic annotation /// 0030032 // lamellipodium assembly // not recorded /// 0030100 // regulation of endocytosis // inferred from electronic annotation /// 0030100 // regulation of endocytosis // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0042058 // regulation of epidermal growth factor receptor signaling pathway // inferred from electronic annotation /// 0042058 // regulation of epidermal growth factor receptor signaling pathway // not recorded /// 0043542 // endothelial cell migration // inferred from electronic annotation /// 0043542 // endothelial cell migration // not recorded /// 0043616 // keratinocyte proliferation // inferred from electronic annotation /// 0043616 // keratinocyte proliferation // not recorded /// 0045885 // positive regulation of survival gene product expression // inferred from electronic annotation /// 0045885 // positive regulation of survival gene product expression // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // not recorded /// 0050850 // positive regulation of calcium-mediated signaling // inferred from electronic annotation /// 0050850 // positive regulation of calcium-mediated signaling // not recorded /// 0050927 // positive regulation of positive chemotaxis // inferred from electronic annotation /// 0050927 // positive regulation of positive chemotaxis // not recorded /// 0051668 // localization within membrane // inferred from electronic annotation /// 0051668 // localization within membrane // not recorded /// 0055096 // low-density lipoprotein mediated signaling // inferred from electronic annotation /// 0055096 // low-density lipoprotein mediated signaling // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030169 // low-density lipoprotein binding // inferred from electronic annotation /// 0030169 // low-density lipoprotein binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0045296 // cadherin binding // inferred from electronic annotation /// 0045296 // cadherin binding // not recorded /// 0055100 // adiponectin binding // inferred from electronic annotation /// 0055100 // adiponectin binding // not recorded 1369426_at NM_022933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022933.1 /DB_XREF=gi:12621091 /GEN=Loc65027 /FEA=FLmRNA /CNT=2 /TID=Rn.54476.1 /TIER=FL /STK=2 /UG=Rn.54476 /LL=65027 /DEF=Rattus norvegicus beta-catenin binding protein (Loc65027), mRNA. /PROD=beta-catenin binding protein /FL=gb:NM_022933.1 gb:AF169825.1 NM_022933 chromodomain helicase DNA binding protein 8 Chd8 65027 NM_022933 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from direct assay /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // not recorded /// 0043044 // ATP-dependent chromatin remodeling // inferred from sequence or structural similarity /// 0043044 // ATP-dependent chromatin remodeling // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045945 // positive regulation of transcription from RNA polymerase III promoter // not recorded /// 0045945 // positive regulation of transcription from RNA polymerase III promoter // inferred from sequence or structural similarity /// 0045945 // positive regulation of transcription from RNA polymerase III promoter // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // inferred from direct assay /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from electronic annotation /// 0071339 // MLL1 complex // not recorded /// 0071339 // MLL1 complex // inferred from sequence or structural similarity /// 0071339 // MLL1 complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0002039 // p53 binding // not recorded /// 0002039 // p53 binding // inferred from sequence or structural similarity /// 0002039 // p53 binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003678 // DNA helicase activity // not recorded /// 0003678 // DNA helicase activity // inferred from sequence or structural similarity /// 0003678 // DNA helicase activity // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from direct assay /// 0008013 // beta-catenin binding // not recorded /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0008094 // DNA-dependent ATPase activity // inferred from sequence or structural similarity /// 0008094 // DNA-dependent ATPase activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from direct assay /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0035064 // methylated histone residue binding // not recorded /// 0035064 // methylated histone residue binding // inferred from sequence or structural similarity /// 0035064 // methylated histone residue binding // inferred from electronic annotation /// 0042393 // histone binding // not recorded /// 0042393 // histone binding // inferred from sequence or structural similarity /// 0042393 // histone binding // inferred from electronic annotation /// 0070016 // armadillo repeat domain binding // inferred from physical interaction 1369427_at NM_022617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022617.1 /DB_XREF=gi:12018297 /GEN=Mpeg1 /FEA=FLmRNA /CNT=2 /TID=Rn.48702.1 /TIER=FL /STK=2 /UG=Rn.48702 /LL=64552 /DEF=Rattus norvegicus macrophage expressed gene 1 (Mpeg1), mRNA. /PROD=macrophage expressed gene 1 /FL=gb:NM_022617.1 gb:AF156540.1 NM_022617 macrophage expressed gene 1 Mpeg1 64552 NM_022617 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1369428_a_at U28430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U28430 /DB_XREF=gi:1658329 /FEA=DNA_2 /CNT=1 /TID=Rn.55109.3 /TIER=ConsEnd /STK=0 /UG=Rn.55109 /LL=79246 /UG_GENE=Htr3a /UG_TITLE=5-Hydroxytryptamine (serotonin) receptor 3A /DEF=Rattus norvegicus 5-HT3 receptor (5-HT3) gene, and alternatively spliced products, partial cds U28430 5-hydroxytryptamine (serotonin) receptor 3a Htr3a 79246 NM_024394 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007268 // synaptic transmission // traceable author statement /// 0042220 // response to cocaine // inferred from expression pattern /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // not recorded /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005232 // serotonin-activated cation-selective channel activity // inferred from direct assay /// 0005249 // voltage-gated potassium channel activity // inferred from direct assay /// 0051378 // serotonin binding // not recorded 1369429_at NM_053994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053994.1 /DB_XREF=gi:16758899 /GEN=Pdhal /FEA=FLmRNA /CNT=2 /TID=Rn.11126.1 /TIER=FL /STK=2 /UG=Rn.11126 /LL=117098 /DEF=Rattus norvegicus pyruvate dehydrogenase E1 alpha-like (Pdhal), mRNA. /PROD=pyruvate dehydrogenase E1 alpha-like /FL=gb:NM_053994.1 gb:U44125.1 NM_053994 pyruvate dehydrogenase (lipoamide) alpha 2 Pdha2 117098 NM_053994 0006086 // acetyl-CoA biosynthetic process from pyruvate // inferred from direct assay /// 0006096 // glycolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0045254 // pyruvate dehydrogenase complex // inferred from direct assay 0004739 // pyruvate dehydrogenase (acetyl-transferring) activity // inferred from direct assay /// 0004739 // pyruvate dehydrogenase (acetyl-transferring) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016624 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor // inferred from electronic annotation 1369430_at NM_053648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053648.1 /DB_XREF=gi:16758461 /GEN=Bcdo /FEA=FLmRNA /CNT=2 /TID=Rn.3979.1 /TIER=FL /STK=2 /UG=Rn.3979 /LL=114106 /DEF=Rattus norvegicus beta-carotene 15, 15-dioxygenase (Bcdo), mRNA. /PROD=beta-carotene 15, 15-dioxygenase /FL=gb:AB062912.1 gb:NM_053648.1 NM_053648 beta-carotene 15,15'-monooxygenase 1 Bcmo1 114106 NM_053648 0001523 // retinoid metabolic process // inferred from direct assay /// 0001523 // retinoid metabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0003834 // beta-carotene 15,15'-monooxygenase activity // inferred from direct assay /// 0003834 // beta-carotene 15,15'-monooxygenase activity // not recorded /// 0003834 // beta-carotene 15,15'-monooxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369431_at NM_022926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022926.1 /DB_XREF=gi:12621079 /GEN=Galnt7 /FEA=FLmRNA /CNT=2 /TID=Rn.48729.1 /TIER=FL /STK=2 /UG=Rn.48729 /LL=29750 /DEF=Rattus norvegicus UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 (Galnt7), mRNA. /PROD=UDP-N-acetyl-alpha-D-galactosamine: polypeptideN-acetylgalactosaminyltransferase 7 /FL=gb:AF076167.1 gb:NM_022926.1 NM_022926 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) Galnt7 29750 NM_022926 0006493 // protein O-linked glycosylation // inferred from electronic annotation /// 0006493 // protein O-linked glycosylation // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // not recorded /// 0005529 // sugar binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1369432_at NM_019297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019297.1 /DB_XREF=gi:9506484 /GEN=Chrnb2 /FEA=FLmRNA /CNT=2 /TID=Rn.53978.1 /TIER=FL /STK=2 /UG=Rn.53978 /LL=54239 /DEF=Rattus norvegicus cholinergic receptor, nicotinic, beta polypeptide 2 (Chrnb2), mRNA. /PROD=cholinergic receptor, nicotinic, betapolypeptide 2 /FL=gb:NM_019297.1 gb:L31622.1 NM_019297 cholinergic receptor, nicotinic, beta 2 (neuronal) Chrnb2 54239 NM_019297 0001508 // regulation of action potential // not recorded /// 0001508 // regulation of action potential // inferred from electronic annotation /// 0001661 // conditioned taste aversion // inferred from electronic annotation /// 0001661 // conditioned taste aversion // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006939 // smooth muscle contraction // inferred from electronic annotation /// 0006939 // smooth muscle contraction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007271 // synaptic transmission, cholinergic // inferred from mutant phenotype /// 0007601 // visual perception // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0007612 // learning // not recorded /// 0007612 // learning // inferred from electronic annotation /// 0007613 // memory // inferred from electronic annotation /// 0007613 // memory // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008306 // associative learning // not recorded /// 0008306 // associative learning // inferred from electronic annotation /// 0008542 // visual learning // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0014059 // regulation of dopamine secretion // not recorded /// 0014059 // regulation of dopamine secretion // inferred from electronic annotation /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0019233 // sensory perception of pain // not recorded /// 0021562 // vestibulocochlear nerve development // inferred from electronic annotation /// 0021562 // vestibulocochlear nerve development // not recorded /// 0021631 // optic nerve morphogenesis // inferred from electronic annotation /// 0021631 // optic nerve morphogenesis // not recorded /// 0021771 // lateral geniculate nucleus development // inferred from electronic annotation /// 0021771 // lateral geniculate nucleus development // not recorded /// 0021952 // central nervous system projection neuron axonogenesis // inferred from electronic annotation /// 0021952 // central nervous system projection neuron axonogenesis // not recorded /// 0021955 // central nervous system neuron axonogenesis // not recorded /// 0021955 // central nervous system neuron axonogenesis // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // not recorded /// 0032225 // regulation of synaptic transmission, dopaminergic // not recorded /// 0032225 // regulation of synaptic transmission, dopaminergic // inferred from electronic annotation /// 0032226 // positive regulation of synaptic transmission, dopaminergic // inferred from electronic annotation /// 0032226 // positive regulation of synaptic transmission, dopaminergic // not recorded /// 0033603 // positive regulation of dopamine secretion // inferred from electronic annotation /// 0033603 // positive regulation of dopamine secretion // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0035094 // response to nicotine // inferred from mutant phenotype /// 0035094 // response to nicotine // not recorded /// 0035094 // response to nicotine // inferred from electronic annotation /// 0035095 // behavioral response to nicotine // inferred from electronic annotation /// 0035095 // behavioral response to nicotine // not recorded /// 0035176 // social behavior // inferred from electronic annotation /// 0035176 // social behavior // not recorded /// 0042053 // regulation of dopamine metabolic process // inferred from electronic annotation /// 0042053 // regulation of dopamine metabolic process // not recorded /// 0042113 // B cell activation // inferred from electronic annotation /// 0042113 // B cell activation // not recorded /// 0042220 // response to cocaine // inferred from electronic annotation /// 0042220 // response to cocaine // not recorded /// 0042320 // regulation of circadian sleep/wake cycle, REM sleep // inferred from electronic annotation /// 0042320 // regulation of circadian sleep/wake cycle, REM sleep // not recorded /// 0042391 // regulation of membrane potential // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0045188 // regulation of circadian sleep/wake cycle, non-REM sleep // inferred from electronic annotation /// 0045188 // regulation of circadian sleep/wake cycle, non-REM sleep // not recorded /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045471 // response to ethanol // not recorded /// 0045759 // negative regulation of action potential // inferred from electronic annotation /// 0045759 // negative regulation of action potential // not recorded /// 0048814 // regulation of dendrite morphogenesis // inferred from electronic annotation /// 0048814 // regulation of dendrite morphogenesis // not recorded /// 0050877 // neurological system process // not recorded /// 0050877 // neurological system process // inferred from electronic annotation /// 0050890 // cognition // inferred from electronic annotation /// 0050890 // cognition // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051899 // membrane depolarization // inferred from electronic annotation /// 0051899 // membrane depolarization // not recorded /// 0051963 // regulation of synaptogenesis // inferred from electronic annotation /// 0051963 // regulation of synaptogenesis // not recorded /// 0060084 // synaptic transmission involved in micturition // inferred from electronic annotation /// 0060084 // synaptic transmission involved in micturition // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from direct assay /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // not recorded /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred by curator /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from direct assay /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // not recorded /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008144 // drug binding // inferred from direct assay /// 0015464 // acetylcholine receptor activity // inferred from electronic annotation /// 0015464 // acetylcholine receptor activity // not recorded /// 0042166 // acetylcholine binding // inferred from direct assay /// 0042166 // acetylcholine binding // not recorded /// 0042166 // acetylcholine binding // inferred from electronic annotation 1369433_at NM_021741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021741.1 /DB_XREF=gi:11120685 /GEN=Ip63 /FEA=FLmRNA /CNT=2 /TID=Rn.42936.1 /TIER=FL /STK=2 /UG=Rn.42936 /LL=60347 /DEF=Rattus norvegicus IP63 protein (Ip63), mRNA. /PROD=IP63 protein /FL=gb:NM_021741.1 NM_021741 centrosomal protein 78kDa Cep78 60347 NM_021741 0005829 // cytosol // not recorded 1369434_at NM_134400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134400.1 /DB_XREF=gi:19705522 /GEN=P65 /FEA=FLmRNA /CNT=2 /TID=Rn.82702.1 /TIER=FL /STK=2 /UG=Rn.82702 /LL=171437 /DEF=Rattus norvegicus p65 protein (P65), mRNA. /PROD=p65 protein /FL=gb:NM_134400.1 NM_134400 Deoxynucleotidyltransferase, terminal, interacting protein 1 Dnttip1 171437 NM_134400 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1369435_at NM_013048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013048.1 /DB_XREF=gi:6981681 /GEN=Ttpa /FEA=FLmRNA /CNT=2 /TID=Affx.1.7 /TIER=FL /STK=2 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus Tocopherol transfer protein alpha (Ttpa), mRNA. /PROD=tocopherol transfer protein alpha /FL=gb:D16339.1 gb:NM_013048.1 NM_013048 tocopherol (alpha) transfer protein Ttpa 25571 NM_013048 0001890 // placenta development // not recorded /// 0001890 // placenta development // inferred from electronic annotation /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0001892 // embryonic placenta development // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from expression pattern /// 0009268 // response to pH // inferred from direct assay /// 0009636 // response to toxin // inferred from electronic annotation /// 0009636 // response to toxin // not recorded /// 0032502 // developmental process // inferred from expression pattern /// 0042360 // vitamin E metabolic process // inferred from direct assay /// 0042360 // vitamin E metabolic process // not recorded /// 0042360 // vitamin E metabolic process // inferred from electronic annotation /// 0090212 // negative regulation of establishment of blood-brain barrier // inferred from electronic annotation /// 0090212 // negative regulation of establishment of blood-brain barrier // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005770 // late endosome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0008431 // vitamin E binding // inferred from direct assay /// 0019842 // vitamin binding // inferred from direct assay 1369436_at NM_022639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022639.1 /DB_XREF=gi:12018339 /GEN=Chrna10 /FEA=FLmRNA /CNT=2 /TID=Rn.48767.1 /TIER=FL /STK=2 /UG=Rn.48767 /LL=64574 /DEF=Rattus norvegicus neuronal nicotinic acetylcholine receptor subunit (Chrna10), mRNA. /PROD=neuronal nicotinic acetylcholine receptorsubunit /FL=gb:AF196344.1 gb:NM_022639.1 NM_022639 cholinergic receptor, nicotinic, alpha 10 Chrna10 64574 NM_022639 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007271 // synaptic transmission, cholinergic // not recorded /// 0007271 // synaptic transmission, cholinergic // traceable author statement /// 0007271 // synaptic transmission, cholinergic // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // inferred from electronic annotation /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from expression pattern /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // not recorded /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation 1369437_at NM_133608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133608.1 /DB_XREF=gi:19424319 /GEN=Slc21a12 /FEA=FLmRNA /CNT=2 /TID=Rn.67081.1 /TIER=FL /STK=2 /UG=Rn.67081 /LL=171144 /DEF=Rattus norvegicus solute carrier family 21 (organic anion transporter), member 12 (Slc21a12), mRNA. /PROD=solute carrier family 21 (organic aniontransporter), member 12 /FL=gb:NM_133608.1 gb:AF239262.1 NM_133608 solute carrier organic anion transporter family, member 4a1 Slco4a1 171144 NM_133608 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0042403 // thyroid hormone metabolic process // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0015349 // thyroid hormone transmembrane transporter activity // inferred from direct assay 1369438_at NM_022857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022857.1 /DB_XREF=gi:12408309 /GEN=N5 /FEA=FLmRNA /CNT=2 /TID=Rn.10074.1 /TIER=FL /STK=2 /UG=Rn.10074 /LL=64825 /DEF=Rattus norvegicus DNA binding protein (N5) (N5), mRNA. /PROD=DNA binding protein (N5) /FL=gb:NM_022857.1 gb:L31882.1 NM_022857 DNA binding protein N5 N5 64825 NM_022857 0003677 // DNA binding // inferred from electronic annotation 1369439_at NM_031009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031009.1 /DB_XREF=gi:13591909 /GEN=Agtr1 /FEA=FLmRNA /CNT=2 /TID=Rn.9815.1 /TIER=FL /STK=2 /UG=Rn.9815 /LL=81638 /DEF=Rattus norvegicus angiotensin II type-1 receptor (Agtr1), mRNA. /PROD=angiotensin II type-1 receptor /FL=gb:NM_031009.1 gb:M87003.1 NM_031009 angiotensin II receptor, type 1b Agtr1b 81638 NM_031009 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0001991 // regulation of systemic arterial blood pressure by circulatory renin-angiotensin // not recorded /// 0001991 // regulation of systemic arterial blood pressure by circulatory renin-angiotensin // inferred from electronic annotation /// 0001999 // renal response to blood flow involved in circulatory renin-angiotensin regulation of systemic arterial blood pressure // traceable author statement /// 0002019 // regulation of renal output by angiotensin // traceable author statement /// 0002035 // brain renin-angiotensin system // not recorded /// 0006950 // response to stress // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042756 // drinking behavior // inferred from electronic annotation /// 0042756 // drinking behavior // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0043627 // response to estrogen stimulus // not recorded /// 0071549 // cellular response to dexamethasone stimulus // inferred from direct assay /// 0071549 // cellular response to dexamethasone stimulus // not recorded /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from mutant phenotype /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0012506 // vesicle membrane // inferred from direct assay /// 0012506 // vesicle membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from mutant phenotype /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016323 // basolateral plasma membrane // not recorded /// 0031983 // vesicle lumen // inferred from direct assay /// 0031983 // vesicle lumen // not recorded 0001596 // angiotensin type I receptor activity // inferred from mutant phenotype /// 0001596 // angiotensin type I receptor activity // not recorded /// 0001596 // angiotensin type I receptor activity // non-traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004945 // angiotensin type II receptor activity // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred from mutant phenotype /// 0017046 // peptide hormone binding // not recorded /// 0043621 // protein self-association // inferred from mutant phenotype /// 0043621 // protein self-association // not recorded 1369440_at NM_130414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130414.1 /DB_XREF=gi:18426839 /GEN=Abcg8 /FEA=FLmRNA /CNT=2 /TID=Rn.81024.1 /TIER=FL /STK=2 /UG=Rn.81024 /DEF=Rattus norvegicus ATP-binding cassette, sub-family G (WHITE), member 8 (Abcg8), mRNA. /PROD=ATP-binding cassette, sub-family G (WHITE),member 8 /FL=gb:AF351785.1 gb:NM_130414.1 NM_130414 ATP-binding cassette, sub-family G (WHITE), member 8 Abcg8 155192 NM_130414 0006810 // transport // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from expression pattern /// 0007588 // excretion // not recorded /// 0010949 // negative regulation of intestinal phytosterol absorption // not recorded /// 0015914 // phospholipid transport // not recorded /// 0015918 // sterol transport // not recorded /// 0015918 // sterol transport // traceable author statement /// 0030300 // regulation of intestinal cholesterol absorption // traceable author statement /// 0030301 // cholesterol transport // traceable author statement /// 0033344 // cholesterol efflux // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042632 // cholesterol homeostasis // not recorded /// 0045796 // negative regulation of intestinal cholesterol absorption // not recorded /// 0055092 // sterol homeostasis // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0043190 // ATP-binding cassette (ABC) transporter complex // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0015248 // sterol transporter activity // inferred from mutant phenotype /// 0016887 // ATPase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0017127 // cholesterol transporter activity // not recorded /// 0017127 // cholesterol transporter activity // traceable author statement /// 0046982 // protein heterodimerization activity // not recorded 1369441_at NM_134461 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134461.1 /DB_XREF=gi:19745189 /GEN=Capn5 /FEA=FLmRNA /CNT=2 /TID=Rn.82700.1 /TIER=FL /STK=2 /UG=Rn.82700 /DEF=Rattus norvegicus calpain 5 (Capn5), mRNA. /PROD=calpain 5 /FL=gb:NM_134461.1 gb:AF484958.1 NM_134461 calpain 5 Capn5 171495 NM_134461 0001541 // ovarian follicle development // inferred from expression pattern /// 0001553 // luteinization // inferred from expression pattern /// 0006508 // proteolysis // inferred from electronic annotation /// 0060014 // granulosa cell differentiation // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1369442_at NM_022621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022621.1 /DB_XREF=gi:12018305 /GEN=Nrp /FEA=FLmRNA /CNT=2 /TID=Rn.48733.1 /TIER=FL /STK=2 /UG=Rn.48733 /LL=64556 /DEF=Rattus norvegicus nucleolin-related protein NRP (NRP) (Nrp), mRNA. /PROD=nucleolin-related protein NRP (NRP) /FL=gb:NM_022621.1 gb:AF151373.1 NM_022621 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1369443_at NM_133569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133569.1 /DB_XREF=gi:19424253 /GEN=Angptl2 /FEA=FLmRNA /CNT=2 /TID=Rn.54464.1 /TIER=FL /STK=2 /UG=Rn.54464 /LL=171100 /DEF=Rattus norvegicus angiopoietin-like 2 (Angptl2), mRNA. /PROD=angiopoietin-like 2 /FL=gb:AF159049.1 gb:NM_133569.1 NM_133569 angiopoietin-like 2 Angptl2 171100 NM_133569 0007165 // signal transduction // inferred from electronic annotation 0005615 // extracellular space // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from electronic annotation 1369444_at NM_017085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017085.1 /DB_XREF=gi:8393226 /GEN=Cyp19 /FEA=FLmRNA /CNT=2 /TID=Rn.21402.1 /TIER=FL /STK=2 /UG=Rn.21402 /LL=25147 /DEF=Rattus norvegicus Cytochrome P450, 19, aromatase (Cyp19), mRNA. /PROD=cytochrome P450, 19, aromatase /FL=gb:NM_017085.1 gb:M33986.1 NM_017085 cytochrome P450, family 19, subfamily a, polypeptide 1 /// cytochrome P450 19A1-like Cyp19a1 /// LOC100359906 100359906 /// 25147 NM_017085 /// XM_002729904 0006694 // steroid biosynthetic process // not recorded /// 0006703 // estrogen biosynthetic process // traceable author statement /// 0008152 // metabolic process // not recorded /// 0008209 // androgen metabolic process // not recorded /// 0008209 // androgen metabolic process // inferred from electronic annotation /// 0050803 // regulation of synapse structure and activity // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060736 // prostate gland growth // not recorded /// 0060736 // prostate gland growth // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from direct assay /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // not recorded /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0020037 // heme binding // not recorded /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // not recorded /// 0070330 // aromatase activity // inferred from electronic annotation 1369445_at NM_022279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022279.1 /DB_XREF=gi:11560106 /GEN=Mre11a /FEA=FLmRNA /CNT=2 /TID=Rn.54477.1 /TIER=FL /STK=2 /UG=Rn.54477 /LL=64046 /DEF=Rattus norvegicus meiotic recombination 11 homolog A (S. cerevisiae) (Mre11a), mRNA. /PROD=MRE11 /FL=gb:NM_022279.1 gb:AF218574.1 NM_022279 MRE11 meiotic recombination 11 homolog A (S. cerevisiae) Mre11a 64046 NM_022279 0000075 // cell cycle checkpoint // traceable author statement /// 0000723 // telomere maintenance // traceable author statement /// 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006302 // double-strand break repair // traceable author statement /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007062 // sister chromatid cohesion // not recorded /// 0007126 // meiosis // inferred from electronic annotation /// 0007131 // reciprocal meiotic recombination // traceable author statement /// 0007507 // heart development // inferred from expression pattern /// 0031954 // positive regulation of protein autophosphorylation // not recorded /// 0032508 // DNA duplex unwinding // not recorded /// 0032876 // negative regulation of DNA endoreduplication // not recorded /// 0033674 // positive regulation of kinase activity // not recorded 0000781 // chromosome, telomeric region // not recorded /// 0000790 // nuclear chromatin // inferred from direct assay /// 0000794 // condensed nuclear chromosome // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from direct assay /// 0005730 // nucleolus // not recorded /// 0030870 // Mre11 complex // traceable author statement /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003677 // DNA binding // not recorded /// 0004003 // ATP-dependent DNA helicase activity // not recorded /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from electronic annotation 1369446_at NM_133405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133405.1 /DB_XREF=gi:19173767 /GEN=Cry2 /FEA=FLmRNA /CNT=2 /TID=Rn.82696.1 /TIER=FL /STK=2 /UG=Rn.82696 /DEF=Rattus norvegicus cryptochrome 2 (photolyase-like) (Cry2), mRNA. /PROD=cryptochrome 2 (photolyase-like) /FL=gb:NM_133405.1 gb:AY033877.1 NM_133405 cryptochrome 2 (photolyase-like) Cry2 170917 NM_133405 0006281 // DNA repair // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006606 // protein import into nucleus // not recorded /// 0007623 // circadian rhythm // inferred from expression pattern /// 0007623 // circadian rhythm // not recorded /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0018298 // protein-chromophore linkage // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003913 // DNA photolyase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0009881 // photoreceptor activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation 1369447_at NM_080908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080908.1 /DB_XREF=gi:18266721 /GEN=Slc28a3 /FEA=FLmRNA /CNT=2 /TID=Rn.81200.1 /TIER=FL /STK=2 /UG=Rn.81200 /DEF=Rattus norvegicus solute carrier family 28 (sodium-coupled nucleoside transporter), member 3 (Slc28a3), mRNA. /PROD=solute carrier family 28 (sodium-couplednucleoside transporter), member 3 /FL=gb:NM_080908.1 gb:AY059414.1 NM_080908 solute carrier family 28 (sodium-coupled nucleoside transporter), member 3 Slc28a3 140944 NM_080908 0001895 // retina homeostasis // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006863 // purine transport // not recorded /// 0015855 // pyrimidine transport // not recorded /// 0015860 // purine nucleoside transport // inferred from electronic annotation /// 0015860 // purine nucleoside transport // not recorded /// 0015864 // pyrimidine nucleoside transport // inferred from electronic annotation /// 0015864 // pyrimidine nucleoside transport // not recorded /// 0071436 // sodium ion export // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001882 // nucleoside binding // inferred from electronic annotation /// 0005415 // nucleoside:sodium symporter activity // not recorded /// 0005415 // nucleoside:sodium symporter activity // inferred from electronic annotation /// 0015389 // pyrimidine- and adenine-specific:sodium symporter activity // inferred from electronic annotation /// 0015389 // pyrimidine- and adenine-specific:sodium symporter activity // not recorded /// 0015390 // purine-specific nucleoside:sodium symporter activity // inferred from electronic annotation /// 0015390 // purine-specific nucleoside:sodium symporter activity // not recorded 1369448_at NM_054003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_054003.1 /DB_XREF=gi:16758917 /GEN=B3gat1 /FEA=FLmRNA /CNT=2 /TID=Rn.10772.1 /TIER=FL /STK=2 /UG=Rn.10772 /LL=117108 /DEF=Rattus norvegicus beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) (B3gat1), mRNA. /PROD=beta-1,3-glucuronyltransferase 1(glucuronosyltransferase P) /FL=gb:D88035.1 gb:NM_054003.1 NM_054003 beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) B3gat1 117108 NM_054003 0008152 // metabolic process // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005796 // Golgi lumen // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008499 // UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity // inferred from electronic annotation /// 0008499 // UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity // not recorded /// 0015018 // galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity // inferred from direct assay /// 0015018 // galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369449_at NM_013094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013094.1 /DB_XREF=gi:6981371 /GEN=Plin /FEA=FLmRNA /CNT=2 /TID=Rn.9737.1 /TIER=FL /STK=2 /UG=Rn.9737 /LL=25629 /DEF=Rattus norvegicus Perilipin (Plin), mRNA. /PROD=perilipin /FL=gb:L26043.1 gb:NM_013094.1 NM_013094 perilipin Plin 25629 NM_013094 0006629 // lipid metabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // not recorded 0005811 // lipid particle // not recorded /// 0005811 // lipid particle // inferred from direct assay /// 0005811 // lipid particle // inferred from electronic annotation 0005515 // protein binding // not recorded 1369450_at NM_134380 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134380.1 /DB_XREF=gi:19705488 /GEN=UST5r /FEA=FLmRNA /CNT=2 /TID=Rn.81214.1 /TIER=FL /STK=2 /UG=Rn.81214 /DEF=Rattus norvegicus integral membrane transport protein UST5r (UST5r), mRNA. /PROD=integral membrane transport protein UST5r /FL=gb:NM_134380.1 NM_134380 integral membrane transport protein UST5r Ust5r 171398 NM_134380 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1369451_a_at L29403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L29403.1 /DB_XREF=gi:557196 /FEA=FLmRNA /CNT=1 /TID=Rn.22609.5 /TIER=FL /STK=1 /UG=Rn.22609 /LL=24521 /UG_GENE=Kcnj1 /DEF=Rattus norvegicus (clone ROMK2) epithelial K+ channel mRNA, complete cds. /PROD=K+ channel protein /FL=gb:L29403.1 L29403 potassium inwardly-rectifying channel, subfamily J, member 1 Kcnj1 24521 NM_017023 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from mutant phenotype 0005886 // plasma membrane // inferred from direct assay /// 0008076 // voltage-gated potassium channel complex // inferred from mutant phenotype /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from mutant phenotype /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0015272 // ATP-activated inward rectifier potassium channel activity // inferred from direct assay /// 0030955 // potassium ion binding // inferred from mutant phenotype /// 0042277 // peptide binding // inferred from direct assay 1369452_a_at NM_053554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053554.1 /DB_XREF=gi:16758323 /GEN=Picalm /FEA=FLmRNA /CNT=2 /TID=Rn.10888.1 /TIER=FL /STK=2 /UG=Rn.10888 /LL=89816 /DEF=Rattus norvegicus phosphatidylinositol binding clathrin assembly protein (Picalm), mRNA. /PROD=phosphatidylinositol binding clathrin assemblyprotein /FL=gb:NM_053554.1 gb:AF041374.1 NM_053554 phosphatidylinositol binding clathrin assembly protein Picalm 89816 NM_053554 0006897 // endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // not recorded /// 0006898 // receptor-mediated endocytosis // inferred from sequence or structural similarity /// 0007409 // axonogenesis // inferred from mutant phenotype /// 0007409 // axonogenesis // not recorded /// 0016192 // vesicle-mediated transport // inferred from mutant phenotype /// 0016197 // endosome transport // not recorded /// 0030097 // hemopoiesis // not recorded /// 0030100 // regulation of endocytosis // inferred from mutant phenotype /// 0030100 // regulation of endocytosis // not recorded /// 0031623 // receptor internalization // not recorded /// 0032880 // regulation of protein localization // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0048261 // negative regulation of receptor-mediated endocytosis // not recorded /// 0048268 // clathrin coat assembly // inferred from direct assay /// 0048268 // clathrin coat assembly // not recorded /// 0048268 // clathrin coat assembly // inferred from electronic annotation /// 0048813 // dendrite morphogenesis // inferred from mutant phenotype /// 0048813 // dendrite morphogenesis // not recorded /// 0051223 // regulation of protein transport // inferred from mutant phenotype 0005622 // intracellular // not recorded /// 0005634 // nucleus // not recorded /// 0005768 // endosome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005905 // coated pit // not recorded /// 0005905 // coated pit // inferred from sequence or structural similarity /// 0005905 // coated pit // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030118 // clathrin coat // inferred from electronic annotation /// 0030122 // AP-2 adaptor complex // not recorded /// 0030132 // clathrin coat of coated pit // not recorded /// 0030136 // clathrin-coated vesicle // inferred from direct assay /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0045202 // synapse // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005545 // phosphatidylinositol binding // inferred from direct assay /// 0005545 // phosphatidylinositol binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from direct assay /// 0030276 // clathrin binding // inferred from direct assay /// 0030276 // clathrin binding // not recorded /// 0030276 // clathrin binding // inferred from sequence or structural similarity /// 0030276 // clathrin binding // inferred from electronic annotation /// 0032050 // clathrin heavy chain binding // not recorded 1369453_at NM_057136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057136.1 /DB_XREF=gi:16923989 /GEN=Epn1 /FEA=FLmRNA /CNT=2 /TID=Rn.30007.1 /TIER=FL /STK=2 /UG=Rn.30007 /LL=117277 /DEF=Rattus norvegicus Epsin 1 (Epn1), mRNA. /PROD=Epsin 1 /FL=gb:NM_057136.1 gb:AF018261.1 NM_057136 Epsin 1 Epn1 117277 NM_057136 0006897 // endocytosis // inferred from direct assay /// 0006897 // endocytosis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0008134 // transcription factor binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation 1369454_at NM_017058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017058.1 /DB_XREF=gi:8394528 /GEN=Vdr /FEA=FLmRNA /CNT=2 /TID=Rn.10911.1 /TIER=FL /STK=2 /UG=Rn.10911 /LL=24873 /DEF=Rattus norvegicus Vitamin D (1,25-dihydroxyvitamin D3) receptor (Vdr), mRNA. /PROD=vitamin D (1,25-dihydroxyvitamin D3) receptor /FL=gb:NM_017058.1 gb:J04147.1 NM_017058 vitamin D (1,25- dihydroxyvitamin D3) receptor Vdr 24873 NM_017058 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0007165 // signal transduction // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007275 // multicellular organismal development // not recorded /// 0007595 // lactation // inferred from electronic annotation /// 0007595 // lactation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008628 // induction of apoptosis by hormones // inferred from direct assay /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010980 // positive regulation of vitamin D 24-hydroxylase activity // inferred from electronic annotation /// 0010980 // positive regulation of vitamin D 24-hydroxylase activity // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0046697 // decidualization // inferred from electronic annotation /// 0046697 // decidualization // not recorded /// 0050892 // intestinal absorption // inferred from electronic annotation /// 0050892 // intestinal absorption // not recorded /// 0060058 // positive regulation of apoptosis involved in mammary gland involution // inferred from electronic annotation /// 0060058 // positive regulation of apoptosis involved in mammary gland involution // not recorded /// 0060558 // regulation of calcidiol 1-monooxygenase activity // inferred from electronic annotation /// 0060745 // mammary gland branching involved in pregnancy // inferred from electronic annotation /// 0060745 // mammary gland branching involved in pregnancy // not recorded /// 0070561 // vitamin D receptor signaling pathway // not recorded /// 0070561 // vitamin D receptor signaling pathway // inferred from electronic annotation 0000228 // nuclear chromosome // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005720 // nuclear heterochromatin // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // not recorded /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005499 // vitamin D binding // inferred from direct assay /// 0005499 // vitamin D binding // inferred from mutant phenotype /// 0005499 // vitamin D binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008434 // vitamin D3 receptor activity // inferred from direct assay /// 0008434 // vitamin D3 receptor activity // not recorded /// 0008434 // vitamin D3 receptor activity // traceable author statement /// 0008434 // vitamin D3 receptor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // not recorded /// 0070644 // vitamin D response element binding // inferred from electronic annotation /// 0070644 // vitamin D response element binding // not recorded 1369455_at NM_053754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053754.1 /DB_XREF=gi:16758589 /GEN=Abcg5 /FEA=FLmRNA /CNT=2 /TID=Rn.74258.1 /TIER=FL /STK=2 /UG=Rn.74258 /LL=114628 /DEF=Rattus norvegicus ATP-binding cassette, sub-family G (WHITE), member 5 (sterolin 1) (Abcg5), mRNA. /PROD=ATP-binding cassette, sub-family G (WHITE),member 5 (sterolin 1) /FL=gb:AF312714.2 gb:NM_053754.1 NM_053754 ATP-binding cassette, sub-family G (WHITE), member 5 Abcg5 114628 NM_053754 0006810 // transport // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from expression pattern /// 0007588 // excretion // inferred from electronic annotation /// 0007588 // excretion // not recorded /// 0010212 // response to ionizing radiation // inferred from expression pattern /// 0010949 // negative regulation of intestinal phytosterol absorption // inferred from electronic annotation /// 0010949 // negative regulation of intestinal phytosterol absorption // not recorded /// 0015918 // sterol transport // traceable author statement /// 0030300 // regulation of intestinal cholesterol absorption // traceable author statement /// 0030301 // cholesterol transport // traceable author statement /// 0033344 // cholesterol efflux // inferred from electronic annotation /// 0033344 // cholesterol efflux // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0045796 // negative regulation of intestinal cholesterol absorption // inferred from electronic annotation /// 0045796 // negative regulation of intestinal cholesterol absorption // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0043190 // ATP-binding cassette (ABC) transporter complex // traceable author statement /// 0045177 // apical part of cell // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0017127 // cholesterol transporter activity // not recorded /// 0017127 // cholesterol transporter activity // traceable author statement /// 0017127 // cholesterol transporter activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1369456_at NM_017250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017250.1 /DB_XREF=gi:8393585 /GEN=Htr2b /FEA=FLmRNA /CNT=2 /TID=Rn.10425.1 /TIER=FL /STK=2 /UG=Rn.10425 /LL=29581 /DEF=Rattus norvegicus 5-hydroxytryptamine (serotonin) receptor 2B (Htr2b), mRNA. /PROD=5-hydroxytryptamine (serotonin) receptor 2B /FL=gb:NM_017250.1 NM_017250 5-hydroxytryptamine (serotonin) receptor 2B Htr2b 29581 NM_017250 0001755 // neural crest cell migration // not recorded /// 0001755 // neural crest cell migration // inferred from sequence or structural similarity /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001819 // positive regulation of cytokine production // not recorded /// 0001819 // positive regulation of cytokine production // inferred from sequence or structural similarity /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0001938 // positive regulation of endothelial cell proliferation // inferred from sequence or structural similarity /// 0002031 // G-protein coupled receptor internalization // not recorded /// 0002031 // G-protein coupled receptor internalization // inferred from sequence or structural similarity /// 0003007 // heart morphogenesis // not recorded /// 0003007 // heart morphogenesis // inferred from sequence or structural similarity /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003300 // cardiac muscle hypertrophy // not recorded /// 0003300 // cardiac muscle hypertrophy // inferred from sequence or structural similarity /// 0006182 // cGMP biosynthetic process // not recorded /// 0006182 // cGMP biosynthetic process // inferred from sequence or structural similarity /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from sequence or structural similarity /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // not recorded /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from sequence or structural similarity /// 0007210 // serotonin receptor signaling pathway // not recorded /// 0007210 // serotonin receptor signaling pathway // inferred from sequence or structural similarity /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0010507 // negative regulation of autophagy // not recorded /// 0010507 // negative regulation of autophagy // inferred from sequence or structural similarity /// 0014033 // neural crest cell differentiation // not recorded /// 0014033 // neural crest cell differentiation // inferred from sequence or structural similarity /// 0014033 // neural crest cell differentiation // inferred from electronic annotation /// 0014065 // phosphoinositide 3-kinase cascade // not recorded /// 0014065 // phosphoinositide 3-kinase cascade // inferred from sequence or structural similarity /// 0014827 // intestine smooth muscle contraction // not recorded /// 0014827 // intestine smooth muscle contraction // inferred from sequence or structural similarity /// 0014827 // intestine smooth muscle contraction // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0016310 // phosphorylation // inferred from sequence or structural similarity /// 0019722 // calcium-mediated signaling // not recorded /// 0019722 // calcium-mediated signaling // inferred from sequence or structural similarity /// 0019722 // calcium-mediated signaling // inferred from electronic annotation /// 0042310 // vasoconstriction // not recorded /// 0042310 // vasoconstriction // inferred from sequence or structural similarity /// 0042493 // response to drug // not recorded /// 0042493 // response to drug // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from sequence or structural similarity /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // not recorded /// 0046489 // phosphoinositide biosynthetic process // not recorded /// 0046489 // phosphoinositide biosynthetic process // inferred from sequence or structural similarity /// 0048598 // embryonic morphogenesis // not recorded /// 0048598 // embryonic morphogenesis // inferred from sequence or structural similarity /// 0048598 // embryonic morphogenesis // inferred from electronic annotation /// 0050715 // positive regulation of cytokine secretion // not recorded /// 0050715 // positive regulation of cytokine secretion // inferred from sequence or structural similarity /// 0051000 // positive regulation of nitric-oxide synthase activity // not recorded /// 0051000 // positive regulation of nitric-oxide synthase activity // inferred from sequence or structural similarity /// 0051209 // release of sequestered calcium ion into cytosol // not recorded /// 0051209 // release of sequestered calcium ion into cytosol // inferred from sequence or structural similarity /// 0051209 // release of sequestered calcium ion into cytosol // inferred from electronic annotation /// 0051781 // positive regulation of cell division // not recorded /// 0051781 // positive regulation of cell division // inferred from sequence or structural similarity /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0060548 // negative regulation of cell death // not recorded /// 0060548 // negative regulation of cell death // inferred from sequence or structural similarity /// 0070371 // ERK1 and ERK2 cascade // not recorded /// 0070371 // ERK1 and ERK2 cascade // inferred from sequence or structural similarity /// 0070371 // ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070528 // protein kinase C signaling cascade // not recorded /// 0070528 // protein kinase C signaling cascade // inferred from sequence or structural similarity /// 0071277 // cellular response to calcium ion // not recorded /// 0071277 // cellular response to calcium ion // inferred from sequence or structural similarity /// 0071502 // cellular response to temperature stimulus // not recorded /// 0071502 // cellular response to temperature stimulus // inferred from sequence or structural similarity 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001965 // G-protein alpha-subunit binding // not recorded /// 0004435 // phosphoinositide phospholipase C activity // not recorded /// 0004435 // phosphoinositide phospholipase C activity // inferred from sequence or structural similarity /// 0004435 // phosphoinositide phospholipase C activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // not recorded /// 0004993 // serotonin receptor activity // inferred from sequence or structural similarity /// 0004993 // serotonin receptor activity // inferred from electronic annotation /// 0005099 // Ras GTPase activator activity // not recorded /// 0005099 // Ras GTPase activator activity // inferred from sequence or structural similarity /// 0005099 // Ras GTPase activator activity // inferred from electronic annotation /// 0005262 // calcium channel activity // not recorded /// 0005262 // calcium channel activity // inferred from sequence or structural similarity /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008144 // drug binding // not recorded /// 0008144 // drug binding // inferred from sequence or structural similarity /// 0008144 // drug binding // inferred from electronic annotation /// 0051378 // serotonin binding // not recorded /// 0051378 // serotonin binding // inferred from sequence or structural similarity /// 0051378 // serotonin binding // inferred from electronic annotation 1369457_a_at AF419342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF419342.1 /DB_XREF=gi:17385945 /FEA=FLmRNA /CNT=1 /TID=Rn.81199.2 /TIER=FL /STK=1 /UG=Rn.81199 /LL=140594 /UG_GENE=Sytl4 /DEF=Rattus norvegicus granuphilin B mRNA, complete cds. /PROD=granuphilin B /FL=gb:AF419342.1 AF419342 synaptotagmin-like 4 Sytl4 140594 NM_080410 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006887 // exocytosis // not recorded /// 0006887 // exocytosis // inferred from sequence or structural similarity /// 0006887 // exocytosis // inferred from electronic annotation /// 0046676 // negative regulation of insulin secretion // inferred from electronic annotation /// 0046676 // negative regulation of insulin secretion // not recorded 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic to membrane // not recorded /// 0019898 // extrinsic to membrane // inferred from sequence or structural similarity /// 0019898 // extrinsic to membrane // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from electronic annotation /// 0030141 // stored secretory granule // not recorded /// 0030658 // transport vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005543 // phospholipid binding // not recorded /// 0005543 // phospholipid binding // inferred from sequence or structural similarity /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from electronic annotation /// 0042043 // neurexin binding // not recorded /// 0042043 // neurexin binding // inferred from sequence or structural similarity /// 0042043 // neurexin binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369458_at NM_053417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053417.1 /DB_XREF=gi:16758155 /GEN=Gab2 /FEA=FLmRNA /CNT=2 /TID=Rn.64639.1 /TIER=FL /STK=2 /UG=Rn.64639 /LL=84477 /DEF=Rattus norvegicus GRB2-associated binding protein 2 (Gab2), mRNA. /PROD=GRB2-associated binding protein 2 /FL=gb:NM_053417.1 gb:AF230367.2 NM_053417 GRB2-associated binding protein 2 Gab2 84477 NM_053417 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0030316 // osteoclast differentiation // not recorded /// 0030316 // osteoclast differentiation // inferred from sequence or structural similarity /// 0043306 // positive regulation of mast cell degranulation // inferred from sequence or structural similarity /// 0048015 // phosphoinositide-mediated signaling // inferred from sequence or structural similarity 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0005068 // transmembrane receptor protein tyrosine kinase adaptor protein activity // not recorded /// 0005068 // transmembrane receptor protein tyrosine kinase adaptor protein activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from sequence or structural similarity /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // inferred from sequence or structural similarity 1369459_at NM_053550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053550.1 /DB_XREF=gi:16758315 /GEN=Pip5k2b /FEA=FLmRNA /CNT=2 /TID=Rn.30025.1 /TIER=FL /STK=2 /UG=Rn.30025 /LL=89812 /DEF=Rattus norvegicus phosphatidylinositol-4-phosphate 5-kinase, type II, beta (Pip5k2b), mRNA. /PROD=phosphatidylinositol-4-phosphate 5-kinase, typeII, beta /FL=gb:NM_053550.1 gb:AF033355.1 NM_053550 phosphatidylinositol-5-phosphate 4-kinase, type II, beta Pip4k2b 89812 NM_053550 0046488 // phosphatidylinositol metabolic process // inferred from electronic annotation /// 0046488 // phosphatidylinositol metabolic process // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016307 // phosphatidylinositol phosphate kinase activity // inferred from electronic annotation /// 0016308 // 1-phosphatidylinositol-4-phosphate 5-kinase activity // inferred from electronic annotation /// 0016308 // 1-phosphatidylinositol-4-phosphate 5-kinase activity // not recorded /// 0016309 // 1-phosphatidylinositol-5-phosphate 4-kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1369460_at NM_022619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022619.1 /DB_XREF=gi:12018301 /GEN=Slc7a2 /FEA=FLmRNA /CNT=2 /TID=Rn.48707.1 /TIER=FL /STK=2 /UG=Rn.48707 /LL=64554 /DEF=Rattus norvegicus cationic amino acid transporter-2A (Slc7a2), mRNA. /PROD=cationic amino acid transporter-2A /FL=gb:NM_022619.1 gb:AF158025.1 NM_022619 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 Slc7a2 64554 NM_001134686 /// NM_022619 0002537 // nitric oxide production involved in inflammatory response // not recorded /// 0002537 // nitric oxide production involved in inflammatory response // inferred from electronic annotation /// 0003333 // amino acid transmembrane transport // not recorded /// 0006809 // nitric oxide biosynthetic process // not recorded /// 0006809 // nitric oxide biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded /// 0015807 // L-amino acid transport // not recorded /// 0015807 // L-amino acid transport // inferred from electronic annotation /// 0015809 // arginine transport // inferred from direct assay /// 0015809 // arginine transport // not recorded /// 0015809 // arginine transport // inferred from electronic annotation /// 0015819 // lysine transport // not recorded /// 0015819 // lysine transport // inferred from electronic annotation /// 0015822 // ornithine transport // not recorded /// 0015822 // ornithine transport // inferred from electronic annotation /// 0042116 // macrophage activation // not recorded /// 0042116 // macrophage activation // inferred from electronic annotation /// 0043030 // regulation of macrophage activation // not recorded /// 0043030 // regulation of macrophage activation // inferred from electronic annotation /// 0050727 // regulation of inflammatory response // not recorded /// 0050727 // regulation of inflammatory response // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred by curator /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0000064 // L-ornithine transmembrane transporter activity // not recorded /// 0000064 // L-ornithine transmembrane transporter activity // inferred from electronic annotation /// 0005289 // high affinity arginine transmembrane transporter activity // not recorded /// 0005289 // high affinity arginine transmembrane transporter activity // inferred from electronic annotation /// 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015179 // L-amino acid transmembrane transporter activity // not recorded /// 0015179 // L-amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015181 // arginine transmembrane transporter activity // inferred from direct assay /// 0015181 // arginine transmembrane transporter activity // not recorded /// 0015181 // arginine transmembrane transporter activity // traceable author statement /// 0015181 // arginine transmembrane transporter activity // inferred from electronic annotation /// 0015189 // L-lysine transmembrane transporter activity // not recorded /// 0015189 // L-lysine transmembrane transporter activity // inferred from electronic annotation 1369461_at NM_031089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031089.1 /DB_XREF=gi:13592032 /GEN=Pthr2 /FEA=FLmRNA /CNT=2 /TID=Rn.10601.1 /TIER=FL /STK=2 /UG=Rn.10601 /LL=81753 /DEF=Rattus norvegicus parathyroid hormone receptor 2 (Pthr2), mRNA. /PROD=parathyroid hormone receptor 2 /FL=gb:U55836.1 gb:NM_031089.1 NM_031089 parathyroid hormone 2 receptor Pth2r 81753 NM_031089 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004991 // parathyroid hormone receptor activity // inferred from direct assay 1369462_at NM_012563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012563.1 /DB_XREF=gi:6978870 /GEN=Gad2 /FEA=FLmRNA /CNT=2 /TID=Rn.29951.1 /TIER=FL /STK=2 /UG=Rn.29951 /LL=24380 /DEF=Rattus norvegicus Glutamate decarboxylase 2 (islet) (Gad2), mRNA. /PROD=glutamate decarboxylase 2 (islet) /FL=gb:NM_012563.1 gb:M72422.1 NM_012563 glutamate decarboxylase 2 Gad2 24380 NM_012563 0006540 // glutamate decarboxylation to succinate // inferred from direct assay /// 0007268 // synaptic transmission // traceable author statement /// 0019752 // carboxylic acid metabolic process // inferred from electronic annotation /// 0042136 // neurotransmitter biosynthetic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0030672 // synaptic vesicle membrane // inferred from direct assay /// 0031225 // anchored to membrane // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004351 // glutamate decarboxylase activity // inferred from direct assay /// 0004351 // glutamate decarboxylase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1369463_at NM_013148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013148.1 /DB_XREF=gi:6981061 /GEN=Htr5a /FEA=FLmRNA /CNT=2 /TID=Rn.10569.1 /TIER=FL /STK=2 /UG=Rn.10569 /LL=25689 /DEF=Rattus norvegicus 5-hydroxytryptamine (serotonin) receptor 5A (Htr5a), mRNA. /PROD=5 /FL=gb:L10072.1 gb:NM_013148.1 NM_013148 5-hydroxytryptamine (serotonin) receptor 5A Htr5a 25689 NM_013148 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007187 // G-protein signaling, coupled to cyclic nucleotide second messenger // inferred from mutant phenotype /// 0007420 // brain development // inferred from expression pattern /// 0019933 // cAMP-mediated signaling // inferred from electronic annotation /// 0019933 // cAMP-mediated signaling // not recorded /// 0021766 // hippocampus development // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // inferred from mutant phenotype /// 0004993 // serotonin receptor activity // not recorded /// 0004993 // serotonin receptor activity // inferred from electronic annotation 1369464_at NM_053509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053509.1 /DB_XREF=gi:16758239 /GEN=Zp1 /FEA=FLmRNA /CNT=2 /TID=Rn.10890.1 /TIER=FL /STK=2 /UG=Rn.10890 /LL=85271 /DEF=Rattus norvegicus zona pellucida glycoprotein 1 (Zp1), mRNA. /PROD=zona pellucida glycoprotein 1 /FL=gb:AB000928.1 gb:NM_053509.1 NM_053509 zona pellucida glycoprotein 1 (sperm receptor) Zp1 85271 NM_053509 0007338 // single fertilization // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1369465_at NM_012584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012584.1 /DB_XREF=gi:6981049 /GEN=Hsd3b /FEA=FLmRNA /CNT=2 /TID=Rn.34902.1 /TIER=FL /STK=2 /UG=Rn.34902 /LL=24470 /DEF=Rattus norvegicus Hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase (Hsd3b), mRNA. /PROD=hydroxy-delta-5-steroid dehydrogenase, 3 beta-and steroid delta-isomerase /FL=gb:NM_012584.1 gb:M67465.1 NM_012584 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 5 Hsd3b5 24470 NM_012584 0006694 // steroid biosynthetic process // inferred from direct assay /// 0006694 // steroid biosynthetic process // traceable author statement /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0042448 // progesterone metabolic process // inferred from direct assay /// 0050810 // regulation of steroid biosynthetic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003854 // 3-beta-hydroxy-delta5-steroid dehydrogenase activity // inferred from direct assay /// 0003854 // 3-beta-hydroxy-delta5-steroid dehydrogenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005496 // steroid binding // inferred from direct assay /// 0016229 // steroid dehydrogenase activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from direct assay 1369466_at NM_022930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022930.1 /DB_XREF=gi:12621087 /GEN=Chrna9 /FEA=FLmRNA /CNT=2 /TID=Rn.54463.1 /TIER=FL /STK=2 /UG=Rn.54463 /LL=65024 /DEF=Rattus norvegicus acetylcholine receptor alpha 9 subunit (nAChR) (Chrna9), mRNA. /PROD=acetylcholine receptor alpha 9 subunit (nAChR) /FL=gb:U12336.1 gb:NM_022930.1 NM_022930 cholinergic receptor, nicotinic, alpha 9 Chrna9 65024 NM_022930 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007605 // sensory perception of sound // inferred from expression pattern /// 0034220 // ion transmembrane transport // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // inferred from electronic annotation /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from direct assay /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // not recorded /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369467_a_at NM_012621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012621.1 /DB_XREF=gi:6981349 /GEN=Pfkfb1 /FEA=FLmRNA /CNT=2 /TID=Rn.10115.1 /TIER=FL /STK=2 /UG=Rn.10115 /LL=24638 /DEF=Rattus norvegicus 6-Phosphofructo-2-kinasefructose-2,6-bisphosphatase 1 (liver and muscle) (Pfkfb1), mRNA. /PROD=6-Phosphofructo-2-kinasefructose-2,6-bisphosphatase 1 (liver and muscle) /FL=gb:NM_012621.1 gb:J04197.1 NM_012621 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 Pfkfb1 24638 NM_012621 0006000 // fructose metabolic process // inferred from electronic annotation /// 0006003 // fructose 2,6-bisphosphate metabolic process // not recorded /// 0006003 // fructose 2,6-bisphosphate metabolic process // inferred from sequence or structural similarity /// 0006003 // fructose 2,6-bisphosphate metabolic process // traceable author statement /// 0006003 // fructose 2,6-bisphosphate metabolic process // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from expression pattern /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0033133 // positive regulation of glucokinase activity // inferred from mutant phenotype /// 0033762 // response to glucagon stimulus // inferred from expression pattern /// 0042594 // response to starvation // inferred from expression pattern /// 0046835 // carbohydrate phosphorylation // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern 0005829 // cytosol // not recorded /// 0043540 // 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 complex // inferred from direct assay /// 0043540 // 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 complex // not recorded /// 0043540 // 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 complex // inferred from sequence or structural similarity /// 0043540 // 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003873 // 6-phosphofructo-2-kinase activity // inferred from direct assay /// 0003873 // 6-phosphofructo-2-kinase activity // inferred from electronic annotation /// 0004331 // fructose-2,6-bisphosphate 2-phosphatase activity // inferred from direct assay /// 0004331 // fructose-2,6-bisphosphate 2-phosphatase activity // not recorded /// 0004331 // fructose-2,6-bisphosphate 2-phosphatase activity // inferred from sequence or structural similarity /// 0004331 // fructose-2,6-bisphosphate 2-phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019900 // kinase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0070095 // fructose-6-phosphate binding // inferred from direct assay 1369468_at NM_022623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022623.1 /DB_XREF=gi:12018309 /GEN=Fzd4 /FEA=FLmRNA /CNT=2 /TID=Rn.48736.1 /TIER=FL /STK=2 /UG=Rn.48736 /LL=64558 /DEF=Rattus norvegicus frizzled receptor 4 (Fzd4), mRNA. /PROD=frizzled receptor 4 /FL=gb:NM_022623.1 gb:AF183910.1 NM_022623 frizzled homolog 4 (Drosophila) Fzd4 64558 NM_022623 0001553 // luteinization // not recorded /// 0001570 // vasculogenesis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0010812 // negative regulation of cell-substrate adhesion // not recorded /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030947 // regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0031987 // locomotion involved in locomotory behavior // not recorded /// 0034446 // substrate adhesion-dependent cell spreading // not recorded /// 0042701 // progesterone secretion // not recorded /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017147 // Wnt-protein binding // inferred from physical interaction /// 0017147 // Wnt-protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0042813 // Wnt receptor activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1369469_s_at NM_138855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_138855.1 /DB_XREF=gi:20302005 /GEN=Gs4 /FEA=FLmRNA /CNT=2 /TID=Affx.1.8 /TIER=FL /STK=2 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus spermatogenesis related protein Gs4 (Gs4), mRNA. /PROD=spermatogenesis related protein Gs4 /FL=gb:AF492385.1 gb:NM_138855.1 NM_138855 speedy homolog A (Xenopus laevis) Spdya 192209 NM_138855 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0000082 // G1/S transition of mitotic cell cycle // inferred from sequence or structural similarity /// 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // not recorded /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // inferred from sequence or structural similarity /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0019901 // protein kinase binding // inferred from electronic annotation 1369470_at NM_021703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021703.1 /DB_XREF=gi:11067444 /GEN=LOC60332 /FEA=FLmRNA /CNT=2 /TID=Rn.42933.1 /TIER=FL /STK=2 /UG=Rn.42933 /LL=60332 /DEF=Rattus norvegicus Testis-specific A-kinase-anchoring-protein (LOC60332), mRNA. /PROD=Testis-specific A-kinase-anchoring-protein /FL=gb:NM_021703.1 NM_021703 A kinase (PRKA) anchor protein 14 Akap14 60332 NM_021703 0007283 // spermatogenesis // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0044442 // microtubule-based flagellum part // inferred from direct assay 0051018 // protein kinase A binding // inferred from physical interaction 1369471_at NM_138914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_138914.1 /DB_XREF=gi:20302116 /GEN=Rnd2 /FEA=FLmRNA /CNT=2 /TID=Affx.1.9 /TIER=FL /STK=2 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus rapostlin (Rnd2), mRNA. /PROD=rapostlin /FL=gb:NM_138914.1 gb:AB073208.1 NM_138914 formin binding protein 1 Fnbp1 192348 NM_138914 0006897 // endocytosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from direct assay /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1369472_a_at NM_031018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031018.1 /DB_XREF=gi:13591925 /GEN=Atf2 /FEA=FLmRNA /CNT=2 /TID=Rn.9825.1 /TIER=FL /STK=2 /UG=Rn.9825 /LL=81647 /DEF=Rattus norvegicus RATF2 (Atf2), mRNA. /PROD=RATF2 /FL=gb:U38938.1 gb:NM_031018.1 NM_031018 activating transcription factor 2 Atf2 81647 NM_031018 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0032915 // positive regulation of transforming growth factor-beta2 production // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046983 // protein dimerization activity // inferred from electronic annotation 1369473_at NM_017033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017033.1 /DB_XREF=gi:8393950 /GEN=Pgm1 /FEA=FLmRNA /CNT=2 /TID=Rn.9970.1 /TIER=FL /STK=2 /UG=Rn.9970 /LL=24645 /DEF=Rattus norvegicus Phosphoglucomutase 1 (Pgm1), mRNA. /PROD=phosphoglucomutase 1 /FL=gb:L11694.1 gb:NM_017033.1 NM_017033 phosphoglucomutase 1 Pgm1 24645 NM_017033 0005975 // carbohydrate metabolic process // traceable author statement /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006874 // cellular calcium ion homeostasis // traceable author statement /// 0009314 // response to radiation // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004614 // phosphoglucomutase activity // inferred from electronic annotation /// 0004614 // phosphoglucomutase activity // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation /// 0016868 // intramolecular transferase activity, phosphotransferases // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369474_a_at AF020757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF020757.1 /DB_XREF=gi:2738918 /GEN=P2X2 /FEA=FLmRNA /CNT=1 /TID=Rn.10991.5 /TIER=FL /STK=1 /UG=Rn.10991 /LL=114115 /DEF=Rattus norvegicus P2X2-4 receptor (P2X2) mRNA, complete cds. /PROD=P2X2-4 receptor /FL=gb:AF020757.1 AF020757 purinergic receptor P2X, ligand-gated ion channel, 2 P2rx2 114115 NM_053656 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0003029 // detection of hypoxic conditions in blood by carotid body chemoreceptor signaling // inferred from electronic annotation /// 0003029 // detection of hypoxic conditions in blood by carotid body chemoreceptor signaling // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0007268 // synaptic transmission // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0007528 // neuromuscular junction development // inferred from electronic annotation /// 0007528 // neuromuscular junction development // not recorded /// 0009743 // response to carbohydrate stimulus // inferred from electronic annotation /// 0009743 // response to carbohydrate stimulus // not recorded /// 0010033 // response to organic substance // not recorded /// 0010033 // response to organic substance // inferred from electronic annotation /// 0014832 // urinary bladder smooth muscle contraction // inferred from electronic annotation /// 0014832 // urinary bladder smooth muscle contraction // not recorded /// 0019228 // regulation of action potential in neuron // inferred from direct assay /// 0019228 // regulation of action potential in neuron // inferred from mutant phenotype /// 0030432 // peristalsis // inferred from electronic annotation /// 0030432 // peristalsis // not recorded /// 0033198 // response to ATP // inferred from electronic annotation /// 0033198 // response to ATP // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0048266 // behavioral response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // not recorded /// 0048741 // skeletal muscle fiber development // not recorded /// 0048741 // skeletal muscle fiber development // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from electronic annotation /// 0050909 // sensory perception of taste // not recorded /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051260 // protein homooligomerization // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0044424 // intracellular part // inferred from electronic annotation /// 0044424 // intracellular part // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0004931 // extracellular ATP-gated cation channel activity // inferred from direct assay /// 0004931 // extracellular ATP-gated cation channel activity // inferred from mutant phenotype /// 0004931 // extracellular ATP-gated cation channel activity // not recorded /// 0004931 // extracellular ATP-gated cation channel activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from direct assay /// 0015276 // ligand-gated ion channel activity // inferred from direct assay /// 0016151 // nickel ion binding // inferred from direct assay /// 0035091 // phosphoinositide binding // inferred from mutant phenotype /// 0042802 // identical protein binding // inferred from physical interaction /// 0042802 // identical protein binding // not recorded /// 0045340 // mercury ion binding // inferred from direct assay /// 0046870 // cadmium ion binding // inferred from direct assay /// 0050897 // cobalt ion binding // inferred from direct assay 1369475_x_at AF028604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF028604.1 /DB_XREF=gi:3851460 /GEN=P2X2 /FEA=mRNA /CNT=1 /TID=Rn.10991.11 /TIER=ConsEnd /STK=0 /UG=Rn.10991 /LL=114115 /DEF=Rattus norvegicus P2X2 purinoceptor isoform f (P2X2) mRNA, partial cds. /PROD=P2X2 purinoceptor isoform f AF028604 purinergic receptor P2X, ligand-gated ion channel, 2 P2rx2 114115 NM_053656 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0003029 // detection of hypoxic conditions in blood by carotid body chemoreceptor signaling // inferred from electronic annotation /// 0003029 // detection of hypoxic conditions in blood by carotid body chemoreceptor signaling // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0007268 // synaptic transmission // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0007528 // neuromuscular junction development // inferred from electronic annotation /// 0007528 // neuromuscular junction development // not recorded /// 0009743 // response to carbohydrate stimulus // inferred from electronic annotation /// 0009743 // response to carbohydrate stimulus // not recorded /// 0010033 // response to organic substance // not recorded /// 0010033 // response to organic substance // inferred from electronic annotation /// 0014832 // urinary bladder smooth muscle contraction // inferred from electronic annotation /// 0014832 // urinary bladder smooth muscle contraction // not recorded /// 0019228 // regulation of action potential in neuron // inferred from direct assay /// 0019228 // regulation of action potential in neuron // inferred from mutant phenotype /// 0030432 // peristalsis // inferred from electronic annotation /// 0030432 // peristalsis // not recorded /// 0033198 // response to ATP // inferred from electronic annotation /// 0033198 // response to ATP // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0048266 // behavioral response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // not recorded /// 0048741 // skeletal muscle fiber development // not recorded /// 0048741 // skeletal muscle fiber development // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from electronic annotation /// 0050909 // sensory perception of taste // not recorded /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051260 // protein homooligomerization // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0044424 // intracellular part // inferred from electronic annotation /// 0044424 // intracellular part // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0004931 // extracellular ATP-gated cation channel activity // inferred from direct assay /// 0004931 // extracellular ATP-gated cation channel activity // inferred from mutant phenotype /// 0004931 // extracellular ATP-gated cation channel activity // not recorded /// 0004931 // extracellular ATP-gated cation channel activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from direct assay /// 0015276 // ligand-gated ion channel activity // inferred from direct assay /// 0016151 // nickel ion binding // inferred from direct assay /// 0035091 // phosphoinositide binding // inferred from mutant phenotype /// 0042802 // identical protein binding // inferred from physical interaction /// 0042802 // identical protein binding // not recorded /// 0045340 // mercury ion binding // inferred from direct assay /// 0046870 // cadmium ion binding // inferred from direct assay /// 0050897 // cobalt ion binding // inferred from direct assay 1369476_at NM_017089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017089.1 /DB_XREF=gi:8393301 /GEN=Efnb1 /FEA=FLmRNA /CNT=2 /TID=Rn.44398.1 /TIER=FL /STK=2 /UG=Rn.44398 /LL=25186 /DEF=Rattus norvegicus Ephrin B1 (Efnb1), mRNA. /PROD=ephrin B1 /FL=gb:NM_017089.1 gb:U07560.1 NM_017089 ephrin B1 Efnb1 25186 NM_017089 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from mutant phenotype /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // traceable author statement /// 0007411 // axon guidance // inferred from electronic annotation /// 0009880 // embryonic pattern specification // inferred from electronic annotation /// 0009880 // embryonic pattern specification // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0048013 // ephrin receptor signaling pathway // traceable author statement 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded /// 0045202 // synapse // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0046875 // ephrin receptor binding // not recorded /// 0046875 // ephrin receptor binding // traceable author statement /// 0046875 // ephrin receptor binding // inferred from electronic annotation 1369477_at NM_130820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130820.1 /DB_XREF=gi:18677750 /GEN=Pnma1 /FEA=FLmRNA /CNT=2 /TID=Rn.81186.1 /TIER=FL /STK=2 /UG=Rn.81186 /DEF=Rattus norvegicus paraneoplastic antigen MA1 (Pnma1), mRNA. /PROD=paraneoplastic antigen MA1 /FL=gb:NM_130820.1 gb:AF335505.1 NM_130820 paraneoplastic antigen MA1 Pnma1 170636 NM_130820 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369478_at NM_053317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053317.1 /DB_XREF=gi:16758011 /GEN=Nr0b1 /FEA=FLmRNA /CNT=2 /TID=Rn.10596.1 /TIER=FL /STK=2 /UG=Rn.10596 /LL=58850 /DEF=Rattus norvegicus nuclear receptor subfamily 0, group B, member 1 (Nr0b1), mRNA. /PROD=nuclear receptor subfamily 0, group B, member 1 /FL=gb:NM_053317.1 NM_053317 nuclear receptor subfamily 0, group B, member 1 Nr0b1 58850 NM_053317 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // not recorded /// 0006694 // steroid biosynthetic process // inferred from sequence or structural similarity /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006950 // response to stress // not recorded /// 0007283 // spermatogenesis // inferred from expression pattern /// 0007283 // spermatogenesis // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007530 // sex determination // not recorded /// 0007530 // sex determination // inferred from electronic annotation /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0008406 // gonad development // not recorded /// 0008406 // gonad development // inferred from sequence or structural similarity /// 0008406 // gonad development // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0008584 // male gonad development // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from expression pattern /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030238 // male sex determination // inferred from electronic annotation /// 0030238 // male sex determination // not recorded /// 0030325 // adrenal gland development // not recorded /// 0030325 // adrenal gland development // inferred from sequence or structural similarity /// 0030325 // adrenal gland development // inferred from electronic annotation /// 0033144 // negative regulation of steroid hormone receptor signaling pathway // inferred from electronic annotation /// 0033144 // negative regulation of steroid hormone receptor signaling pathway // not recorded /// 0033327 // Leydig cell differentiation // inferred from electronic annotation /// 0033327 // Leydig cell differentiation // not recorded /// 0043433 // negative regulation of transcription factor activity // inferred from mutant phenotype /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0043433 // negative regulation of transcription factor activity // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0050810 // regulation of steroid biosynthetic process // traceable author statement /// 0060008 // Sertoli cell differentiation // inferred from electronic annotation /// 0060008 // Sertoli cell differentiation // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005626 // insoluble fraction // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0042788 // polysomal ribosome // not recorded /// 0042788 // polysomal ribosome // inferred from sequence or structural similarity /// 0042788 // polysomal ribosome // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003706 // ligand-regulated transcription factor activity // not recorded /// 0003706 // ligand-regulated transcription factor activity // inferred from sequence or structural similarity /// 0003706 // ligand-regulated transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0016564 // transcription repressor activity // inferred from mutant phenotype /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // traceable author statement /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0017163 // basal transcription repressor activity // not recorded /// 0017163 // basal transcription repressor activity // inferred from sequence or structural similarity /// 0017163 // basal transcription repressor activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0032448 // DNA hairpin binding // not recorded /// 0032448 // DNA hairpin binding // inferred from sequence or structural similarity /// 0032448 // DNA hairpin binding // inferred from electronic annotation /// 0035258 // steroid hormone receptor binding // inferred from electronic annotation /// 0035258 // steroid hormone receptor binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from mutant phenotype /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0050682 // AF-2 domain binding // inferred from electronic annotation /// 0050682 // AF-2 domain binding // not recorded 1369479_at NM_031142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031142.1 /DB_XREF=gi:13592128 /GEN=Doc2b /FEA=FLmRNA /CNT=2 /TID=Rn.10689.1 /TIER=FL /STK=2 /UG=Rn.10689 /LL=81820 /DEF=Rattus norvegicus Doc2b (Doc2b), mRNA. /PROD=Doc2b /FL=gb:U70778.2 gb:NM_031142.1 NM_031142 double C2-like domains, beta Doc2b 81820 NM_031142 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from expression pattern /// 0008104 // protein localization // not recorded /// 0008104 // protein localization // inferred from sequence or structural similarity /// 0008104 // protein localization // inferred from electronic annotation /// 0031340 // positive regulation of vesicle fusion // inferred from direct assay /// 0032024 // positive regulation of insulin secretion // not recorded /// 0032024 // positive regulation of insulin secretion // inferred from sequence or structural similarity /// 0032024 // positive regulation of insulin secretion // inferred from electronic annotation /// 0045956 // positive regulation of calcium ion-dependent exocytosis // inferred from direct assay /// 0048791 // calcium ion-dependent exocytosis of neurotransmitter // inferred from direct assay /// 0048791 // calcium ion-dependent exocytosis of neurotransmitter // not recorded /// 0048791 // calcium ion-dependent exocytosis of neurotransmitter // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031201 // SNARE complex // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005544 // calcium-dependent phospholipid binding // inferred from direct assay /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation /// 0019905 // syntaxin binding // inferred from electronic annotation /// 0019905 // syntaxin binding // not recorded 1369480_at NM_031744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031744.1 /DB_XREF=gi:13994180 /GEN=Slc16a8 /FEA=FLmRNA /CNT=2 /TID=Rn.14526.1 /TIER=FL /STK=2 /UG=Rn.14526 /LL=65200 /DEF=Rattus norvegicus solute carrier family 16 (monocarboxylic acid transporters), member 8 (Slc16a8), mRNA. /PROD=solute carrier family 16 (monocarboxylic acidtransporters), member 8 /FL=gb:NM_031744.1 gb:AF059258.1 NM_031744 solute carrier family 16, member 8 (monocarboxylic acid transporter 3) Slc16a8 65200 NM_031744 0006810 // transport // inferred from electronic annotation /// 0015711 // organic anion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009925 // basal plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0015293 // symporter activity // inferred from electronic annotation /// 0015355 // secondary active monocarboxylate transmembrane transporter activity // traceable author statement /// 0015355 // secondary active monocarboxylate transmembrane transporter activity // inferred from electronic annotation 1369481_at NM_053552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053552.1 /DB_XREF=gi:16758319 /GEN=Tnfsf4 /FEA=FLmRNA /CNT=2 /TID=Rn.30043.1 /TIER=FL /STK=2 /UG=Rn.30043 /LL=89814 /DEF=Rattus norvegicus tumor necrosis factor (ligand) superfamily, member 4 (Tnfsf4), mRNA. /PROD=tumor necrosis factor (ligand) superfamily,member 4 /FL=gb:AF037067.1 gb:NM_053552.1 NM_053552 tumor necrosis factor (ligand) superfamily, member 4 Tnfsf4 89814 NM_053552 0001816 // cytokine production // inferred from mutant phenotype /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0032582 // negative regulation of gene-specific transcription // inferred from electronic annotation /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0032743 // positive regulation of interleukin-2 production // inferred from direct assay /// 0042098 // T cell proliferation // inferred from mutant phenotype /// 0042104 // positive regulation of activated T cell proliferation // inferred from direct assay /// 0043433 // negative regulation of transcription factor activity // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0050710 // negative regulation of cytokine secretion // inferred from electronic annotation /// 0050710 // negative regulation of cytokine secretion // not recorded /// 0051024 // positive regulation of immunoglobulin secretion // inferred from electronic annotation /// 0051024 // positive regulation of immunoglobulin secretion // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005164 // tumor necrosis factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0032813 // tumor necrosis factor receptor superfamily binding // inferred from mutant phenotype /// 0032813 // tumor necrosis factor receptor superfamily binding // inferred from physical interaction /// 0032813 // tumor necrosis factor receptor superfamily binding // not recorded /// 0032813 // tumor necrosis factor receptor superfamily binding // inferred from electronic annotation 1369482_a_at NM_019159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019159.1 /DB_XREF=gi:9507160 /GEN=Syn2 /FEA=FLmRNA /CNT=2 /TID=Rn.506.1 /TIER=FL /STK=2 /UG=Rn.506 /LL=29179 /DEF=Rattus norvegicus synapsin II (Syn2), mRNA. /PROD=synapsin II /FL=gb:M27926.1 gb:NM_019159.1 NM_019159 synapsin II Syn2 29179 NM_001034020 /// NM_019159 0007269 // neurotransmitter secretion // not recorded /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0046928 // regulation of neurotransmitter secretion // traceable author statement 0008021 // synaptic vesicle // inferred from direct assay /// 0008021 // synaptic vesicle // traceable author statement /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // traceable author statement 1369483_at NM_012705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012705.1 /DB_XREF=gi:6978630 /GEN=Cd4 /FEA=FLmRNA /CNT=2 /TID=Rn.10748.1 /TIER=FL /STK=2 /UG=Rn.10748 /LL=24932 /DEF=Rattus norvegicus CD4 antigen (p55) (Cd4), mRNA. /PROD=CD4 antigen (p55) /FL=gb:M15768.1 gb:NM_012705.1 NM_012705 Cd4 molecule Cd4 24932 NM_012705 0001816 // cytokine production // inferred from electronic annotation /// 0001816 // cytokine production // not recorded /// 0006948 // induction by virus of host cell-cell fusion // inferred from electronic annotation /// 0006948 // induction by virus of host cell-cell fusion // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0019059 // initiation of viral infection // not recorded /// 0030217 // T cell differentiation // not recorded /// 0030217 // T cell differentiation // inferred from sequence or structural similarity /// 0030217 // T cell differentiation // inferred from electronic annotation /// 0032507 // maintenance of protein location in cell // inferred from electronic annotation /// 0032507 // maintenance of protein location in cell // not recorded /// 0042110 // T cell activation // inferred from mutant phenotype /// 0045058 // T cell selection // not recorded /// 0045058 // T cell selection // inferred from sequence or structural similarity /// 0045058 // T cell selection // inferred from electronic annotation /// 0045234 // protein palmitoleylation // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050850 // positive regulation of calcium-mediated signaling // inferred from electronic annotation /// 0050850 // positive regulation of calcium-mediated signaling // not recorded /// 0050863 // regulation of T cell activation // not recorded /// 0050863 // regulation of T cell activation // inferred from electronic annotation /// 0050870 // positive regulation of T cell activation // inferred from electronic annotation /// 0050870 // positive regulation of T cell activation // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded 0005769 // early endosome // not recorded /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded 0001948 // glycoprotein binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1369484_at NM_031590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031590.1 /DB_XREF=gi:13928801 /GEN=Wisp2 /FEA=FLmRNA /CNT=2 /TID=Rn.53991.1 /TIER=FL /STK=2 /UG=Rn.53991 /LL=29576 /DEF=Rattus norvegicus WNT1 inducible signaling pathway protein 2 (Wisp2), mRNA. /PROD=WNT1 inducible signaling pathway protein 2 /FL=gb:AF259981.1 gb:NM_031590.1 NM_031590 WNT1 inducible signaling pathway protein 2 Wisp2 29576 NM_031590 0001558 // regulation of cell growth // inferred from electronic annotation /// 0001558 // regulation of cell growth // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay 0005520 // insulin-like growth factor binding // inferred from electronic annotation 1369485_at NM_130747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130747.1 /DB_XREF=gi:18543354 /GEN=rACH /FEA=FLmRNA /CNT=2 /TID=Rn.67071.1 /TIER=FL /STK=2 /UG=Rn.67071 /LL=170570 /DEF=Rattus norvegicus cytoplasmic acetyl-CoA hydrolase (rACH), mRNA. /PROD=cytoplasmic acetyl-CoA hydrolase /FL=gb:NM_130747.1 gb:AB040609.1 NM_130747 acyl-CoA thioesterase 12 Acot12 170570 NM_130747 0006084 // acetyl-CoA metabolic process // inferred from electronic annotation /// 0006084 // acetyl-CoA metabolic process // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006637 // acyl-CoA metabolic process // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0003986 // acetyl-CoA hydrolase activity // inferred from direct assay /// 0003986 // acetyl-CoA hydrolase activity // not recorded /// 0003986 // acetyl-CoA hydrolase activity // inferred from electronic annotation /// 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1369486_at NM_130750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130750.1 /DB_XREF=gi:18543360 /GEN=Gasz /FEA=FLmRNA /CNT=2 /TID=Rn.81233.1 /TIER=FL /STK=2 /UG=Rn.81233 /DEF=Rattus norvegicus Gasz (Gasz), mRNA. /PROD=Gasz /FL=gb:NM_130750.1 gb:AF461260.1 NM_130750 ankyrin repeat, SAM and basic leucine zipper domain containing 1 Asz1 170578 NM_130750 0007140 // male meiosis // inferred from electronic annotation /// 0007140 // male meiosis // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0034587 // piRNA metabolic process // inferred from electronic annotation /// 0034587 // piRNA metabolic process // not recorded /// 0043046 // DNA methylation involved in gamete generation // inferred from electronic annotation /// 0043046 // DNA methylation involved in gamete generation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0071546 // pi-body // inferred from electronic annotation /// 0071546 // pi-body // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369487_a_at NM_053870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053870.1 /DB_XREF=gi:16758739 /GEN=Kcnj4 /FEA=FLmRNA /CNT=2 /TID=Rn.10197.1 /TIER=FL /STK=2 /UG=Rn.10197 /LL=116649 /DEF=Rattus norvegicus potassium inwardly-rectifying channel, subfamily J, member 4 (Kcnj4), mRNA. /PROD=potassium inwardly-rectifying channel, subfamilyJ, member 4 /FL=gb:NM_053870.1 gb:U27582.1 NM_053870 potassium inwardly-rectifying channel, subfamily J, member 4 Kcnj4 116649 NM_053870 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation 1369488_at NM_022219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022219.1 /DB_XREF=gi:11560003 /GEN=Fut4 /FEA=FLmRNA /CNT=2 /TID=Rn.44467.1 /TIER=FL /STK=2 /UG=Rn.44467 /LL=60670 /DEF=Rattus norvegicus alpha 1,3-fucosyltransferase Fuc-T (similar to mouse Fut4) (Fut4), mRNA. /PROD=alpha 1,3-fucosyltransferase Fuc-T (similar tomouse Fut4) /FL=gb:AB049938.1 gb:NM_022219.1 NM_022219 fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific) Fut4 60670 NM_022219 0006486 // protein glycosylation // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0008417 // fucosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046920 // alpha(1,3)-fucosyltransferase activity // inferred from direct assay 1369489_at NM_022283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022283.1 /DB_XREF=gi:11560114 /GEN=Bart1 /FEA=FLmRNA /CNT=2 /TID=Rn.54513.1 /TIER=FL /STK=2 /UG=Rn.54513 /LL=64054 /DEF=Rattus norvegicus balloon angioplasty responsive transcript (Bart1), mRNA. /PROD=balloon angioplasty responsive transcript /FL=gb:U33471.1 gb:NM_022283.1 NM_022283 allograft inflammatory factor 1 Aif1 29427 NM_017196 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0010629 // negative regulation of gene expression // inferred from mutant phenotype /// 0014739 // positive regulation of muscle hyperplasia // inferred from mutant phenotype /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0031668 // cellular response to extracellular stimulus // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042116 // macrophage activation // non-traceable author statement /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from direct assay /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from mutant phenotype /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0048678 // response to axon injury // inferred from expression pattern /// 0051017 // actin filament bundle assembly // inferred from electronic annotation /// 0051017 // actin filament bundle assembly // not recorded /// 0051017 // actin filament bundle assembly // inferred from sequence or structural similarity /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051602 // response to electrical stimulus // inferred from expression pattern /// 0070887 // cellular response to chemical stimulus // inferred from expression pattern 0001726 // ruffle // inferred from electronic annotation /// 0001726 // ruffle // not recorded /// 0001891 // phagocytic cup // inferred from electronic annotation /// 0001891 // phagocytic cup // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // inferred from electronic annotation /// 0005884 // actin filament // not recorded /// 0005884 // actin filament // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from direct assay /// 0032587 // ruffle membrane // not recorded /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from sequence or structural similarity /// 0042995 // cell projection // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043204 // perikaryon // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051015 // actin filament binding // not recorded /// 0051015 // actin filament binding // inferred from sequence or structural similarity 1369490_at NM_021848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021848.1 /DB_XREF=gi:11177881 /GEN=Glp2r /FEA=FLmRNA /CNT=2 /TID=Rn.44221.1 /TIER=FL /STK=2 /UG=Rn.44221 /LL=60432 /DEF=Rattus norvegicus glucagon-like peptide-2 receptor precursor (Glp2r), mRNA. /PROD=glucagon-like peptide-2 receptor precursor /FL=gb:NM_021848.1 gb:AF105368.1 NM_021848 glucagon-like peptide 2 receptor Glp2r 60432 NM_021848 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from direct assay /// 0042592 // homeostatic process // traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004967 // glucagon receptor activity // inferred from direct assay 1369491_at NM_053626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053626.1 /DB_XREF=gi:16758433 /GEN=Dao1 /FEA=FLmRNA /CNT=2 /TID=Rn.81058.1 /TIER=FL /STK=2 /UG=Rn.81058 /LL=114027 /DEF=Rattus norvegicus D-amino acid oxidase (Dao1), mRNA. /PROD=D-amino acid oxidase /FL=gb:NM_053626.1 gb:AB003400.1 NM_053626 D-amino-acid oxidase Dao 114027 NM_053626 0006551 // leucine metabolic process // inferred from electronic annotation /// 0006551 // leucine metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0046487 // glyoxylate metabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005777 // peroxisome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003884 // D-amino-acid oxidase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1369492_at NM_020538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020538.1 /DB_XREF=gi:10120489 /GEN=LOC57300 /FEA=FLmRNA /CNT=2 /TID=Rn.48732.1 /TIER=FL /STK=2 /UG=Rn.48732 /LL=57300 /DEF=Rattus norvegicus arylacetamide deacetylase (LOC57300), mRNA. /PROD=arylacetamide deacetylase /FL=gb:NM_020538.1 gb:AF182426.1 NM_020538 arylacetamide deacetylase (esterase) Aadac 57300 NM_020538 0006629 // lipid metabolic process // non-traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0010898 // positive regulation of triglyceride catabolic process // inferred from electronic annotation /// 0010898 // positive regulation of triglyceride catabolic process // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0004806 // triglyceride lipase activity // inferred from electronic annotation /// 0004806 // triglyceride lipase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017171 // serine hydrolase activity // inferred from electronic annotation /// 0017171 // serine hydrolase activity // not recorded /// 0019213 // deacetylase activity // not recorded /// 0019213 // deacetylase activity // inferred from sequence or structural similarity /// 0019213 // deacetylase activity // inferred from electronic annotation 1369493_at NM_012630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012630.1 /DB_XREF=gi:6981405 /GEN=Prlr /FEA=FLmRNA /CNT=2 /TID=Rn.9757.1 /TIER=FL /STK=2 /UG=Rn.9757 /LL=24684 /DEF=Rattus norvegicus Prolactin receptor (Prlr), mRNA. /PROD=prolactin receptor /FL=gb:NM_012630.1 gb:M19304.1 NM_012630 prolactin receptor Prlr 24684 NM_001034111 /// NM_012630 0007171 // activation of transmembrane receptor protein tyrosine kinase activity // not recorded /// 0007259 // JAK-STAT cascade // not recorded /// 0007595 // lactation // not recorded /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0030155 // regulation of cell adhesion // not recorded /// 0030856 // regulation of epithelial cell differentiation // not recorded /// 0060644 // mammary gland epithelial cell differentiation // not recorded /// 0060736 // prostate gland growth // not recorded /// 0060749 // mammary gland alveolus development // not recorded 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004925 // prolactin receptor activity // inferred from mutant phenotype /// 0004925 // prolactin receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0017046 // peptide hormone binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1369494_a_at NM_012850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012850.1 /DB_XREF=gi:6978891 /GEN=Ghrhr /FEA=FLmRNA /CNT=2 /TID=Rn.10936.1 /TIER=FL /STK=2 /UG=Rn.10936 /LL=25321 /DEF=Rattus norvegicus Growth hormone - releasing receptor (Ghrhr), mRNA. /PROD=growth hormone - releasing receptor /FL=gb:NM_012850.1 gb:L01407.1 NM_012850 growth hormone releasing hormone receptor Ghrhr 25321 NM_012850 0007165 // signal transduction // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from direct assay /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from direct assay /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007190 // activation of adenylate cyclase activity // inferred from direct assay /// 0007595 // lactation // inferred from electronic annotation /// 0007595 // lactation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008340 // determination of adult lifespan // inferred from electronic annotation /// 0008340 // determination of adult lifespan // not recorded /// 0019933 // cAMP-mediated signaling // not recorded /// 0019933 // cAMP-mediated signaling // inferred from electronic annotation /// 0021984 // adenohypophysis development // inferred from electronic annotation /// 0021984 // adenohypophysis development // not recorded /// 0030104 // water homeostasis // inferred from electronic annotation /// 0030104 // water homeostasis // not recorded /// 0030252 // growth hormone secretion // not recorded /// 0030252 // growth hormone secretion // inferred from electronic annotation /// 0030816 // positive regulation of cAMP metabolic process // inferred from direct assay /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // not recorded /// 0030879 // mammary gland development // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0032868 // response to insulin stimulus // not recorded /// 0032868 // response to insulin stimulus // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // not recorded /// 0033143 // regulation of steroid hormone receptor signaling pathway // inferred from electronic annotation /// 0033143 // regulation of steroid hormone receptor signaling pathway // not recorded /// 0040008 // regulation of growth // traceable author statement /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0042445 // hormone metabolic process // inferred from electronic annotation /// 0042445 // hormone metabolic process // not recorded /// 0043567 // regulation of insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0043567 // regulation of insulin-like growth factor receptor signaling pathway // not recorded /// 0043627 // response to estrogen stimulus // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // not recorded /// 0046887 // positive regulation of hormone secretion // inferred from electronic annotation /// 0046887 // positive regulation of hormone secretion // not recorded /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // not recorded /// 0060124 // positive regulation of growth hormone secretion // inferred from electronic annotation /// 0060124 // positive regulation of growth hormone secretion // not recorded /// 0060133 // somatotropin secreting cell development // inferred from electronic annotation /// 0060133 // somatotropin secreting cell development // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005637 // nuclear inner membrane // not recorded /// 0005640 // nuclear outer membrane // inferred from electronic annotation /// 0005640 // nuclear outer membrane // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded /// 0030141 // stored secretory granule // inferred from electronic annotation /// 0030141 // stored secretory granule // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016520 // growth hormone-releasing hormone receptor activity // inferred from direct assay /// 0016520 // growth hormone-releasing hormone receptor activity // not recorded /// 0016520 // growth hormone-releasing hormone receptor activity // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred from direct assay /// 0017046 // peptide hormone binding // not recorded /// 0017046 // peptide hormone binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded 1369495_at NM_022714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022714.1 /DB_XREF=gi:12083686 /GEN=Crhr2 /FEA=FLmRNA /CNT=2 /TID=Rn.10023.1 /TIER=FL /STK=2 /UG=Rn.10023 /LL=64680 /DEF=Rattus norvegicus corticotropin-releasing factor receptor subtype 2 (Crhr2), mRNA. /PROD=corticotropin-releasing factor receptor subtype2 /FL=gb:NM_022714.1 gb:U16253.1 NM_022714 corticotropin releasing hormone receptor 2 Crhr2 64680 NM_022714 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from direct assay /// 0007631 // feeding behavior // non-traceable author statement /// 0016525 // negative regulation of angiogenesis // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from mutant phenotype 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004978 // adrenocorticotropin receptor activity // inferred from direct assay /// 0005179 // hormone activity // not recorded /// 0005515 // protein binding // not recorded /// 0015056 // corticotrophin-releasing factor receptor activity // not recorded /// 0017047 // adrenocorticotropin-releasing hormone binding // inferred from direct assay /// 0043404 // corticotropin-releasing hormone receptor activity // inferred from direct assay /// 0051424 // corticotropin-releasing hormone binding // inferred from direct assay 1369496_at NM_057115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057115.1 /DB_XREF=gi:16923959 /GEN=Ptpn12 /FEA=FLmRNA /CNT=2 /TID=Rn.10707.1 /TIER=FL /STK=2 /UG=Rn.10707 /LL=117255 /DEF=Rattus norvegicus protein tyrosine phosphatase, non-receptor type 12 (Ptpn12), mRNA. /PROD=protein tyrosine phosphatase, non-receptor type12 /FL=gb:NM_057115.1 gb:D38072.1 NM_057115 protein tyrosine phosphatase, non-receptor type 12 Ptpn12 117255 NM_057115 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0042246 // tissue regeneration // inferred from expression pattern 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // non-traceable author statement 0004721 // phosphoprotein phosphatase activity // not recorded /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded 1369497_at NM_031537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031537.1 /DB_XREF=gi:14389302 /GEN=Slc11a1 /FEA=FLmRNA /CNT=2 /TID=Rn.48721.1 /TIER=FL /STK=2 /UG=Rn.48721 /LL=24906 /DEF=Rattus norvegicus Solute carrier family 11 member 1 (natural resistance-associated macrophage protein 1), see also D9Arb3 (Slc11a1), mRNA. /PROD=Solute carrier family 11 member 1 (naturalresistance-associated macrophage protein 1) /FL=gb:NM_031537.1 gb:AF041083.1 NM_031537 RoBo-1 LOC24906 24906 NM_031537 1369498_at NM_013182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013182.1 /DB_XREF=gi:6981189 /GEN=Mc5r /FEA=FLmRNA /CNT=2 /TID=Rn.9673.1 /TIER=FL /STK=2 /UG=Rn.9673 /LL=25726 /DEF=Rattus norvegicus Melanocortin 5 receptor (Mc5r), mRNA. /PROD=melanocortin 5 receptor /FL=gb:L27081.1 gb:NM_013182.1 NM_013182 melanocortin 5 receptor Mc5r 25726 NM_013182 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004977 // melanocortin receptor activity // inferred from direct assay /// 0004977 // melanocortin receptor activity // inferred from mutant phenotype /// 0004977 // melanocortin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042562 // hormone binding // inferred from direct assay /// 0042562 // hormone binding // inferred from mutant phenotype 1369499_at NM_019179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019179.1 /DB_XREF=gi:9507216 /GEN=Tyms /FEA=FLmRNA /CNT=2 /TID=Rn.53975.1 /TIER=FL /STK=2 /UG=Rn.53975 /LL=29261 /DEF=Rattus norvegicus thymidylate synthase (Tyms), mRNA. /PROD=thymidylate synthase /FL=gb:NM_019179.1 gb:L12138.1 NM_019179 thymidylate synthetase Tyms 29261 NM_019179 0006231 // dTMP biosynthetic process // inferred from direct assay /// 0006231 // dTMP biosynthetic process // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0009165 // nucleotide biosynthetic process // inferred from electronic annotation /// 0019088 // immortalization of host cell by virus // inferred from expression pattern /// 0031100 // organ regeneration // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0046078 // dUMP metabolic process // inferred from direct assay /// 0046683 // response to organophosphorus // inferred from electronic annotation /// 0046683 // response to organophosphorus // not recorded /// 0048589 // developmental growth // inferred from expression pattern /// 0051216 // cartilage development // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0060574 // intestinal epithelial cell maturation // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay 0000166 // nucleotide binding // inferred from direct assay /// 0004799 // thymidylate synthase activity // inferred from direct assay /// 0004799 // thymidylate synthase activity // inferred from electronic annotation /// 0005542 // folic acid binding // inferred from direct assay /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from direct assay 1369500_at NM_021688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021688.1 /DB_XREF=gi:11067416 /GEN=Kcnk1 /FEA=FLmRNA /CNT=2 /TID=Rn.15693.1 /TIER=FL /STK=2 /UG=Rn.15693 /LL=59324 /DEF=Rattus norvegicus putative potassium channel TWIK (Kcnk1), mRNA. /PROD=putative potassium channel TWIK /FL=gb:NM_021688.1 gb:AF022819.1 NM_021688 potassium channel, subfamily K, member 1 Kcnk1 59324 NM_021688 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0035094 // response to nicotine // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0031526 // brush border membrane // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // not recorded /// 0005515 // protein binding // not recorded 1369501_at NM_017364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017364.1 /DB_XREF=gi:8394005 /GEN=Znf146 /FEA=FLmRNA /CNT=2 /TID=Rn.44413.1 /TIER=FL /STK=2 /UG=Rn.44413 /LL=53982 /DEF=Rattus norvegicus Pancreas zinc finger protein, see also D1Bda10 (Znf146), mRNA. /PROD=pancreas zinc finger protein /FL=gb:NM_017364.1 gb:U56862.1 NM_017364 zinc finger protein 260 Zfp260 53982 NM_017364 0006350 // transcription // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369502_a_at NM_031502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031502.1 /DB_XREF=gi:13928683 /GEN=Amy1a /FEA=FLmRNA /CNT=2 /TID=Rn.67070.1 /TIER=FL /STK=2 /UG=Rn.67070 /LL=24203 /DEF=Rattus norvegicus Amylase 1 (Amy1a), mRNA. /PROD=amylase 1 /FL=gb:J00703.2 gb:NM_031502.1 NM_031502 amylase, alpha 1A (salivary) /// amylase 2, pancreatic Amy1a /// Amy2 24203 /// 497039 NM_001010970 /// NM_031502 0005975 // carbohydrate metabolic process // inferred from expression pattern /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0016052 // carbohydrate catabolic process // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004556 // alpha-amylase activity // traceable author statement /// 0004556 // alpha-amylase activity // inferred from sequence or structural similarity /// 0004556 // alpha-amylase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0016160 // amylase activity // not recorded /// 0016160 // amylase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0031404 // chloride ion binding // inferred from sequence or structural similarity /// 0043169 // cation binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369503_at NM_031502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031502.1 /DB_XREF=gi:13928683 /GEN=Amy1a /FEA=FLmRNA /CNT=2 /TID=Rn.67070.1 /TIER=FL /STK=2 /UG=Rn.67070 /LL=24203 /DEF=Rattus norvegicus Amylase 1 (Amy1a), mRNA. /PROD=amylase 1 /FL=gb:J00703.2 gb:NM_031502.1 NM_031502 amylase 2, pancreatic Amy2 497039 NM_031502 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016052 // carbohydrate catabolic process // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004556 // alpha-amylase activity // inferred from sequence or structural similarity /// 0004556 // alpha-amylase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0031404 // chloride ion binding // inferred from sequence or structural similarity /// 0043169 // cation binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369504_at NM_012775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012775.1 /DB_XREF=gi:6978442 /GEN=Tgfbr1 /FEA=FLmRNA /CNT=2 /TID=Rn.44402.1 /TIER=FL /STK=2 /UG=Rn.44402 /LL=29591 /DEF=Rattus norvegicus transforming growth factor, beta receptor I (Tgfbr1), mRNA. /PROD=transforming growth factor, beta receptor I /FL=gb:L26110.1 gb:NM_012775.1 NM_012775 transforming growth factor, beta receptor 1 Tgfbr1 29591 NM_012775 0000186 // activation of MAPKK activity // inferred from electronic annotation /// 0000186 // activation of MAPKK activity // not recorded /// 0001501 // skeletal system development // not recorded /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0001824 // blastocyst development // inferred from electronic annotation /// 0001824 // blastocyst development // not recorded /// 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007566 // embryo implantation // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008354 // germ cell migration // inferred from electronic annotation /// 0008354 // germ cell migration // not recorded /// 0009636 // response to toxin // inferred from expression pattern /// 0009790 // embryo development // inferred from expression pattern /// 0009790 // embryo development // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016310 // phosphorylation // not recorded /// 0018105 // peptidyl-serine phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0018107 // peptidyl-threonine phosphorylation // inferred from electronic annotation /// 0018107 // peptidyl-threonine phosphorylation // not recorded /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0030199 // collagen fibril organization // not recorded /// 0030307 // positive regulation of cell growth // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // not recorded /// 0030324 // lung development // inferred from expression pattern /// 0031100 // organ regeneration // inferred from expression pattern /// 0034695 // response to prostaglandin E stimulus // inferred from expression pattern /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045602 // negative regulation of endothelial cell differentiation // inferred from mutant phenotype /// 0045885 // positive regulation of survival gene product expression // inferred from electronic annotation /// 0045885 // positive regulation of survival gene product expression // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0046777 // protein autophosphorylation // inferred from mutant phenotype /// 0048538 // thymus development // inferred from electronic annotation /// 0048538 // thymus development // not recorded /// 0048565 // digestive tract development // inferred from expression pattern /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0048701 // embryonic cranial skeleton morphogenesis // inferred from electronic annotation /// 0048701 // embryonic cranial skeleton morphogenesis // not recorded /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // not recorded /// 0048844 // artery morphogenesis // inferred from electronic annotation /// 0048844 // artery morphogenesis // not recorded /// 0048870 // cell motility // inferred from electronic annotation /// 0048870 // cell motility // not recorded /// 0051272 // positive regulation of cellular component movement // inferred from electronic annotation /// 0051272 // positive regulation of cellular component movement // not recorded /// 0051491 // positive regulation of filopodium assembly // inferred from electronic annotation /// 0051491 // positive regulation of filopodium assembly // not recorded /// 0051602 // response to electrical stimulus // inferred from expression pattern /// 0051897 // positive regulation of protein kinase B signaling cascade // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded /// 0060017 // parathyroid gland development // inferred from electronic annotation /// 0060017 // parathyroid gland development // not recorded /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded /// 0060037 // pharyngeal system development // inferred from electronic annotation /// 0060037 // pharyngeal system development // not recorded /// 0060389 // pathway-restricted SMAD protein phosphorylation // not recorded /// 0060389 // pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0060391 // positive regulation of SMAD protein nuclear translocation // inferred from electronic annotation /// 0060391 // positive regulation of SMAD protein nuclear translocation // not recorded /// 0070723 // response to cholesterol // inferred from electronic annotation /// 0070723 // response to cholesterol // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0043235 // receptor complex // not recorded /// 0043235 // receptor complex // inferred from electronic annotation /// 0044459 // plasma membrane part // not recorded /// 0044459 // plasma membrane part // inferred from electronic annotation /// 0070022 // transforming growth factor beta receptor complex // inferred by curator 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from mutant phenotype /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // not recorded /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta receptor activity // not recorded /// 0005024 // transforming growth factor beta receptor activity // inferred from electronic annotation /// 0005025 // transforming growth factor beta receptor activity, type I // inferred from mutant phenotype /// 0005025 // transforming growth factor beta receptor activity, type I // not recorded /// 0005025 // transforming growth factor beta receptor activity, type I // inferred from electronic annotation /// 0005114 // type II transforming growth factor beta receptor binding // inferred from electronic annotation /// 0005114 // type II transforming growth factor beta receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded /// 0019838 // growth factor binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction /// 0046332 // SMAD binding // not recorded /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from mutant phenotype /// 0050431 // transforming growth factor beta binding // inferred from direct assay /// 0050431 // transforming growth factor beta binding // not recorded /// 0050431 // transforming growth factor beta binding // inferred from electronic annotation /// 0070411 // I-SMAD binding // inferred from electronic annotation /// 0070411 // I-SMAD binding // not recorded 1369505_at NM_053643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053643.1 /DB_XREF=gi:16758453 /GEN=Cds2 /FEA=FLmRNA /CNT=2 /TID=Rn.81036.1 /TIER=FL /STK=2 /UG=Rn.81036 /LL=114101 /DEF=Rattus norvegicus CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2 (Cds2), mRNA. /PROD=CDP-diacylglycerol synthase (phosphatidatecytidylyltransferase) 2 /FL=gb:AB052898.1 gb:NM_053643.1 NM_053643 CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2 Cds2 114101 NM_053643 0008654 // phospholipid biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004605 // phosphatidate cytidylyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1369506_at NM_017186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017186.1 /DB_XREF=gi:8393420 /GEN=Gcma /FEA=FLmRNA /CNT=2 /TID=Rn.30042.1 /TIER=FL /STK=2 /UG=Rn.30042 /LL=29394 /DEF=Rattus norvegicus glial cells missing (Drosophila) homolog a (Gcma), mRNA. /PROD=glial cells missing homolog a /FL=gb:AF081557.1 gb:NM_017186.1 NM_017186 glial cells missing homolog 1 (Drosophila) Gcm1 29394 NM_017186 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0060018 // astrocyte fate commitment // inferred from electronic annotation /// 0060018 // astrocyte fate commitment // not recorded /// 0060670 // branching involved in embryonic placenta morphogenesis // inferred from electronic annotation /// 0060670 // branching involved in embryonic placenta morphogenesis // not recorded /// 0060706 // cell differentiation involved in embryonic placenta development // inferred from electronic annotation /// 0060706 // cell differentiation involved in embryonic placenta development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1369507_at NM_133301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133301.1 /DB_XREF=gi:18959237 /GEN=V1rb6 /FEA=FLmRNA /CNT=2 /TID=Rn.10142.1 /TIER=FL /STK=2 /UG=Rn.10142 /LL=115770 /DEF=Rattus norvegicus vomeronasal 1 receptor, B6 (V1rb6), mRNA. /PROD=vomeronasal 1 receptor, B6 /FL=gb:U36896.1 gb:NM_133301.1 NM_133301 vomeronasal 1 receptor, 93 Vom1r93 497787 NM_001008971 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0019236 // response to pheromone // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0016503 // pheromone receptor activity // inferred from electronic annotation 1369508_at NM_133321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133321.1 /DB_XREF=gi:18959269 /GEN=Kcnj15 /FEA=FLmRNA /CNT=2 /TID=Rn.81018.1 /TIER=FL /STK=2 /UG=Rn.81018 /DEF=Rattus norvegicus potassium inwardly-rectifying channel, subfamily J, member 15 (Kcnj15), mRNA. /PROD=potassium inwardly-rectifying channel, subfamilyJ, member 15 /FL=gb:AY028455.1 gb:NM_133321.1 NM_133321 potassium inwardly-rectifying channel, subfamily J, member 15 Kcnj15 170847 NM_133321 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // not recorded /// 0034220 // ion transmembrane transport // not recorded 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from direct assay /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369509_a_at AJ302031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ302031.1 /DB_XREF=gi:11877347 /FEA=mRNA /CNT=1 /TID=Rn.53990.2 /TIER=ConsEnd /STK=0 /UG=Rn.53990 /LL=140656 /UG_GENE=A1bg /DEF=Rattus norvegicus mRNA for putative alpha 1B-glycoprotein (ORF1). /PROD=putative alpha 1B-glycoprotein AJ302031 alpha-1-B glycoprotein A1bg 140656 NM_022258 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region // inferred from electronic annotation 1369510_at NM_023964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023964.1 /DB_XREF=gi:13027413 /GEN=Gapds /FEA=FLmRNA /CNT=2 /TID=Rn.64496.1 /TIER=FL /STK=2 /UG=Rn.64496 /LL=66020 /DEF=Rattus norvegicus glyceraldehyde-3-phosphate dehydrogenase type 2 (Gapds), mRNA. /PROD=glyceraldehyde-3-phosphate dehydrogenase type 2 /FL=gb:NM_023964.1 NM_023964 glyceraldehyde-3-phosphate dehydrogenase, spermatogenic Gapdhs 66020 NM_023964 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006096 // glycolysis // traceable author statement /// 0006096 // glycolysis // inferred from electronic annotation /// 0007286 // spermatid development // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0030317 // sperm motility // inferred from electronic annotation /// 0030317 // sperm motility // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0001669 // acrosomal vesicle // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0009434 // microtubule-based flagellum // inferred from direct assay /// 0009434 // microtubule-based flagellum // not recorded /// 0009434 // microtubule-based flagellum // inferred from electronic annotation /// 0019861 // flagellum // not recorded /// 0019861 // flagellum // non-traceable author statement /// 0019861 // flagellum // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008943 // glyceraldehyde-3-phosphate dehydrogenase activity // not recorded /// 0008943 // glyceraldehyde-3-phosphate dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation 1369511_at NM_012550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012550.1 /DB_XREF=gi:7549757 /GEN=Ednra /FEA=FLmRNA /CNT=2 /TID=Rn.10915.1 /TIER=FL /STK=2 /UG=Rn.10915 /LL=24326 /DEF=Rattus norvegicus Endothelin receptor type A (Ednra), mRNA. /PROD=endothelin receptor type A /FL=gb:NM_012550.1 gb:M60786.1 NM_012550 endothelin receptor type A Ednra 24326 NM_012550 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // not recorded /// 0008217 // regulation of blood pressure // not recorded /// 0014032 // neural crest cell development // inferred from electronic annotation /// 0014032 // neural crest cell development // not recorded /// 0014824 // artery smooth muscle contraction // inferred from electronic annotation /// 0014824 // artery smooth muscle contraction // not recorded /// 0015758 // glucose transport // inferred from electronic annotation /// 0015758 // glucose transport // not recorded /// 0030818 // negative regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0030818 // negative regulation of cAMP biosynthetic process // not recorded /// 0042310 // vasoconstriction // inferred from mutant phenotype /// 0042310 // vasoconstriction // not recorded /// 0042310 // vasoconstriction // inferred from electronic annotation /// 0043278 // response to morphine // inferred from mutant phenotype /// 0050678 // regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0050729 // positive regulation of inflammatory response // inferred from mutant phenotype /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from mutant phenotype /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // inferred from mutant phenotype /// 0051928 // positive regulation of calcium ion transport // inferred from mutant phenotype 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030315 // T-tubule // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay 0001599 // endothelin-A receptor activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004962 // endothelin receptor activity // not recorded /// 0004962 // endothelin receptor activity // traceable author statement /// 0004962 // endothelin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369512_at NM_053408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053408.1 /DB_XREF=gi:16758141 /GEN=Chst3 /FEA=FLmRNA /CNT=2 /TID=Rn.64646.1 /TIER=FL /STK=2 /UG=Rn.64646 /LL=84468 /DEF=Rattus norvegicus carbohydrate (chondroitin 6keratan) sulfotransferase 3 (Chst3), mRNA. /PROD=carbohydrate (chondroitin 6keratan)sulfotransferase 3 /FL=gb:AF178689.2 gb:NM_053408.1 NM_053408 carbohydrate (chondroitin 6) sulfotransferase 3 Chst3 84468 NM_053408 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006790 // sulfur compound metabolic process // not recorded /// 0006790 // sulfur compound metabolic process // traceable author statement /// 0006790 // sulfur compound metabolic process // inferred from electronic annotation /// 0014012 // peripheral nervous system axon regeneration // inferred from expression pattern /// 0030206 // chondroitin sulfate biosynthetic process // inferred from electronic annotation /// 0030206 // chondroitin sulfate biosynthetic process // not recorded /// 0051272 // positive regulation of cellular component movement // inferred from direct assay 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0008459 // chondroitin 6-sulfotransferase activity // inferred from electronic annotation /// 0008459 // chondroitin 6-sulfotransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0050698 // proteoglycan sulfotransferase activity // inferred from direct assay 1369513_at NM_053700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053700.1 /DB_XREF=gi:16758515 /GEN=Scya28 /FEA=FLmRNA /CNT=2 /TID=Rn.74257.1 /TIER=FL /STK=2 /UG=Rn.74257 /LL=114492 /DEF=Rattus norvegicus CC chemokine CCL28 (Scya28), mRNA. /PROD=CC chemokine CCL28 /FL=gb:NM_053700.1 gb:AF361490.1 NM_053700 chemokine (C-C motif) ligand 28 Ccl28 114492 NM_053700 0006955 // immune response // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annotation 1369514_at NM_022212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022212.1 /DB_XREF=gi:11559991 /GEN=Insrr /FEA=FLmRNA /CNT=2 /TID=Rn.44446.1 /TIER=FL /STK=2 /UG=Rn.44446 /LL=60663 /DEF=Rattus norvegicus insulin receptor-related receptor (Insrr), mRNA. /PROD=insulin receptor-related receptor /FL=gb:D13966.1 gb:NM_022212.1 NM_022212 insulin receptor-related receptor Insrr 60663 NM_022212 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0030238 // male sex determination // not recorded /// 0030238 // male sex determination // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369515_s_at NM_022212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022212.1 /DB_XREF=gi:11559991 /GEN=Insrr /FEA=FLmRNA /CNT=2 /TID=Rn.44446.1 /TIER=FL /STK=2 /UG=Rn.44446 /LL=60663 /DEF=Rattus norvegicus insulin receptor-related receptor (Insrr), mRNA. /PROD=insulin receptor-related receptor /FL=gb:D13966.1 gb:NM_022212.1 NM_022212 insulin receptor-related receptor Insrr 60663 NM_022212 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0030238 // male sex determination // not recorded /// 0030238 // male sex determination // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369516_at NM_022852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022852.1 /DB_XREF=gi:12408299 /GEN=Pdx1 /FEA=FLmRNA /CNT=2 /TID=Rn.10131.1 /TIER=FL /STK=2 /UG=Rn.10131 /LL=29535 /DEF=Rattus norvegicus pancreatic and duodenal homeobox gene 1 (Pdx1), mRNA. /PROD=pancreatic and duodenal homeobox gene 1 /FL=gb:U04833.1 gb:NM_022852.1 NM_022852 pancreatic and duodenal homeobox 1 Pdx1 29535 NM_022852 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006006 // glucose metabolic process // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006351 // transcription, DNA-dependent // inferred from mutant phenotype /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0007224 // smoothened signaling pathway // inferred from mutant phenotype /// 0007263 // nitric oxide mediated signal transduction // not recorded /// 0007417 // central nervous system development // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009611 // response to wounding // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from mutant phenotype /// 0010040 // response to iron(II) ion // inferred from expression pattern /// 0010157 // response to chlorate // inferred from expression pattern /// 0010260 // organ senescence // inferred from expression pattern /// 0010942 // positive regulation of cell death // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016331 // morphogenesis of embryonic epithelium // not recorded /// 0016481 // negative regulation of transcription // inferred from mutant phenotype /// 0030073 // insulin secretion // not recorded /// 0030154 // cell differentiation // inferred from mutant phenotype /// 0030154 // cell differentiation // not recorded /// 0031016 // pancreas development // inferred from expression pattern /// 0031016 // pancreas development // not recorded /// 0031017 // exocrine pancreas development // not recorded /// 0031018 // endocrine pancreas development // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032024 // positive regulation of insulin secretion // inferred from mutant phenotype /// 0033273 // response to vitamin // inferred from expression pattern /// 0033993 // response to lipid // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0035094 // response to nicotine // inferred from expression pattern /// 0042127 // regulation of cell proliferation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042593 // glucose homeostasis // inferred from mutant phenotype /// 0042593 // glucose homeostasis // not recorded /// 0043201 // response to leucine // inferred from expression pattern /// 0043279 // response to alkaloid // inferred from expression pattern /// 0043388 // positive regulation of DNA binding // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048863 // stem cell differentiation // inferred from expression pattern /// 0048863 // stem cell differentiation // inferred from mutant phenotype /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0060290 // transdifferentiation // inferred from expression pattern /// 0070542 // response to fatty acid // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0044424 // intracellular part // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // inferred from physical interaction /// 0010843 // promoter binding // inferred from direct assay /// 0016563 // transcription activator activity // inferred from direct assay /// 0016563 // transcription activator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay 1369517_at NM_053910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053910.1 /DB_XREF=gi:16758789 /GEN=Pscd1 /FEA=FLmRNA /CNT=2 /TID=Rn.10672.1 /TIER=FL /STK=2 /UG=Rn.10672 /LL=116691 /DEF=Rattus norvegicus pleckstrin homology, Sec7 and coiledcoil domains 1 (Pscd1), mRNA. /PROD=pleckstrin homology, Sec7 and coiledcoildomains 1 /FL=gb:NM_053910.1 gb:U83895.1 NM_053910 cytohesin 1 Cyth1 116691 NM_053910 0030155 // regulation of cell adhesion // not recorded /// 0032012 // regulation of ARF protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005086 // ARF guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369518_at NM_022213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022213.1 /DB_XREF=gi:11559993 /GEN=Pik3r3 /FEA=FLmRNA /CNT=2 /TID=Rn.44448.1 /TIER=FL /STK=2 /UG=Rn.44448 /LL=60664 /DEF=Rattus norvegicus phosphatidylinositol 3-kinase p55 subunit (Pik3r3), mRNA. /PROD=phosphatidylinositol 3-kinase p55 subunit /FL=gb:NM_022213.1 gb:D64047.1 NM_022213 phosphoinositide-3-kinase, regulatory subunit 3 (gamma) Pik3r3 60664 NM_022213 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // not recorded /// 0042325 // regulation of phosphorylation // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005942 // phosphoinositide 3-kinase complex // inferred from electronic annotation /// 0005942 // phosphoinositide 3-kinase complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035014 // phosphoinositide 3-kinase regulator activity // inferred from electronic annotation /// 0046935 // 1-phosphatidylinositol-3-kinase regulator activity // inferred from direct assay /// 0046935 // 1-phosphatidylinositol-3-kinase regulator activity // not recorded /// 0046935 // 1-phosphatidylinositol-3-kinase regulator activity // inferred from electronic annotation 1369519_at NM_012548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012548.1 /DB_XREF=gi:6978790 /GEN=Edn1 /FEA=FLmRNA /CNT=2 /TID=Rn.10918.1 /TIER=FL /STK=2 /UG=Rn.10918 /LL=24323 /DEF=Rattus norvegicus Endothelin 1 (Edn1), mRNA. /PROD=endothelin 1 /FL=gb:M64711.1 gb:NM_012548.1 NM_012548 endothelin 1 Edn1 24323 NM_012548 0001501 // skeletal system development // not recorded /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001516 // prostaglandin biosynthetic process // inferred from electronic annotation /// 0001516 // prostaglandin biosynthetic process // not recorded /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0003100 // regulation of systemic arterial blood pressure by endothelin // inferred from electronic annotation /// 0003100 // regulation of systemic arterial blood pressure by endothelin // not recorded /// 0006885 // regulation of pH // inferred from electronic annotation /// 0006885 // regulation of pH // not recorded /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from direct assay /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // not recorded /// 0007589 // body fluid secretion // not recorded /// 0007589 // body fluid secretion // inferred from electronic annotation /// 0008217 // regulation of blood pressure // inferred from mutant phenotype /// 0008217 // regulation of blood pressure // not recorded /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0010259 // multicellular organismal aging // inferred from expression pattern /// 0010460 // positive regulation of heart rate // inferred from electronic annotation /// 0010460 // positive regulation of heart rate // not recorded /// 0010613 // positive regulation of cardiac muscle hypertrophy // inferred from electronic annotation /// 0010613 // positive regulation of cardiac muscle hypertrophy // not recorded /// 0014032 // neural crest cell development // inferred from electronic annotation /// 0014032 // neural crest cell development // not recorded /// 0014065 // phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014065 // phosphoinositide 3-kinase cascade // not recorded /// 0014824 // artery smooth muscle contraction // inferred from electronic annotation /// 0014824 // artery smooth muscle contraction // not recorded /// 0014826 // vein smooth muscle contraction // inferred from electronic annotation /// 0014826 // vein smooth muscle contraction // not recorded /// 0015758 // glucose transport // inferred from electronic annotation /// 0015758 // glucose transport // not recorded /// 0019229 // regulation of vasoconstriction // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // not recorded /// 0030072 // peptide hormone secretion // inferred from electronic annotation /// 0030072 // peptide hormone secretion // not recorded /// 0030146 // diuresis // inferred from electronic annotation /// 0030146 // diuresis // not recorded /// 0030147 // natriuresis // inferred from electronic annotation /// 0030147 // natriuresis // not recorded /// 0030185 // nitric oxide transport // inferred from electronic annotation /// 0030185 // nitric oxide transport // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0030593 // neutrophil chemotaxis // not recorded /// 0030818 // negative regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0030818 // negative regulation of cAMP biosynthetic process // not recorded /// 0031583 // activation of phospholipase D activity by G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0031583 // activation of phospholipase D activity by G-protein coupled receptor protein signaling pathway // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0035094 // response to nicotine // inferred from expression pattern /// 0042310 // vasoconstriction // not recorded /// 0042310 // vasoconstriction // inferred from electronic annotation /// 0042313 // protein kinase C deactivation // inferred from electronic annotation /// 0042313 // protein kinase C deactivation // not recorded /// 0042474 // middle ear morphogenesis // inferred from electronic annotation /// 0042474 // middle ear morphogenesis // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043179 // rhythmic excitation // inferred from electronic annotation /// 0043179 // rhythmic excitation // not recorded /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043406 // positive regulation of MAP kinase activity // not recorded /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0043507 // positive regulation of JUN kinase activity // inferred from electronic annotation /// 0043507 // positive regulation of JUN kinase activity // not recorded /// 0045793 // positive regulation of cell size // inferred from electronic annotation /// 0045793 // positive regulation of cell size // not recorded /// 0045840 // positive regulation of mitosis // inferred from electronic annotation /// 0045840 // positive regulation of mitosis // not recorded /// 0045987 // positive regulation of smooth muscle contraction // inferred from direct assay /// 0045987 // positive regulation of smooth muscle contraction // not recorded /// 0046887 // positive regulation of hormone secretion // inferred from electronic annotation /// 0046887 // positive regulation of hormone secretion // not recorded /// 0046888 // negative regulation of hormone secretion // inferred from direct assay /// 0048016 // inositol phosphate-mediated signaling // inferred from electronic annotation /// 0048016 // inositol phosphate-mediated signaling // not recorded /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // not recorded /// 0050880 // regulation of blood vessel size // inferred from electronic annotation /// 0051216 // cartilage development // inferred from electronic annotation /// 0051216 // cartilage development // not recorded /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // inferred from electronic annotation /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // not recorded /// 0051771 // negative regulation of nitric-oxide synthase biosynthetic process // inferred from electronic annotation /// 0051771 // negative regulation of nitric-oxide synthase biosynthetic process // not recorded /// 0051899 // membrane depolarization // inferred from mutant phenotype /// 0060298 // positive regulation of sarcomere organization // inferred from electronic annotation /// 0060298 // positive regulation of sarcomere organization // not recorded /// 0060585 // positive regulation of prostaglandin-endoperoxidase synthase activity // inferred from electronic annotation /// 0060585 // positive regulation of prostaglandin-endoperoxidase synthase activity // not recorded /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005179 // hormone activity // inferred from electronic annotation /// 0005179 // hormone activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0031707 // endothelin A receptor binding // inferred from mutant phenotype /// 0031707 // endothelin A receptor binding // not recorded /// 0031707 // endothelin A receptor binding // inferred from electronic annotation /// 0031708 // endothelin B receptor binding // inferred from mutant phenotype /// 0031708 // endothelin B receptor binding // not recorded /// 0031708 // endothelin B receptor binding // inferred from electronic annotation 1369520_a_at NM_017253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017253.1 /DB_XREF=gi:8392970 /GEN=Bcat1 /FEA=FLmRNA /CNT=2 /TID=Rn.8273.1 /TIER=FL /STK=2 /UG=Rn.8273 /LL=29592 /DEF=Rattus norvegicus branched chain aminotransferase 1, cytosolic (Bcat1), mRNA. /PROD=branched chain aminotransferase 1, cytosolic /FL=gb:NM_017253.1 gb:U35774.1 NM_017253 branched chain aminotransferase 1, cytosolic Bcat1 29592 NM_017253 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009081 // branched chain family amino acid metabolic process // inferred from electronic annotation /// 0009082 // branched chain family amino acid biosynthetic process // inferred from electronic annotation /// 0009083 // branched chain family amino acid catabolic process // inferred from electronic annotation /// 0009083 // branched chain family amino acid catabolic process // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004084 // branched-chain-amino-acid transaminase activity // inferred from direct assay /// 0004084 // branched-chain-amino-acid transaminase activity // not recorded /// 0004084 // branched-chain-amino-acid transaminase activity // traceable author statement /// 0004084 // branched-chain-amino-acid transaminase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay 1369521_at NM_031001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031001.1 /DB_XREF=gi:13591895 /GEN=Ube2d2 /FEA=FLmRNA /CNT=2 /TID=Rn.10634.1 /TIER=FL /STK=2 /UG=Rn.10634 /LL=79435 /DEF=Rattus norvegicus ubiquitin-conjugating enzyme E2D 2 (Ube2d2), mRNA. /PROD=ubiquitin-conjugating enzyme E2D 2 /FL=gb:NM_031001.1 gb:U56407.1 NM_031001 ubiquitin-conjugating enzyme E2D 4 Ube2d4 79435 NM_031001 0035519 // protein K29-linked ubiquitination // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0044314 // protein K27-linked ubiquitination // not recorded /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070534 // protein K63-linked ubiquitination // not recorded /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0070979 // protein K11-linked ubiquitination // not recorded /// 0085020 // protein K6-linked ubiquitination // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1369522_a_at NM_022259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022259.1 /DB_XREF=gi:11560072 /GEN=Nmrk /FEA=FLmRNA /CNT=2 /TID=Rn.53994.1 /TIER=FL /STK=2 /UG=Rn.53994 /LL=64025 /DEF=Rattus norvegicus non MHC restricted killing associated (Nmrk), mRNA. /PROD=transmembrane NK cell receptor 2B4 /FL=gb:AF156989.1 gb:NM_022259.1 NM_022259 Cd244 molecule, natural killer cell receptor 2B4 Cd244 64025 NM_022259 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369523_at NM_078621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_078621.1 /DB_XREF=gi:17530972 /GEN=D6 /FEA=FLmRNA /CNT=2 /TID=Rn.10771.1 /TIER=FL /STK=2 /UG=Rn.10771 /LL=140473 /DEF=Rattus norvegicus CC-chemokine-binding receptor JAB61 (D6), mRNA. /PROD=CC-chemokine-binding receptor JAB61 /FL=gb:NM_078621.1 gb:U92803.1 NM_078621 chemokine binding protein 2 Ccbp2 140473 NM_078621 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016493 // C-C chemokine receptor activity // inferred from electronic annotation /// 0016493 // C-C chemokine receptor activity // not recorded /// 0016494 // C-X-C chemokine receptor activity // inferred from electronic annotation 1369524_at NM_022677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022677.1 /DB_XREF=gi:12083616 /GEN=Zic1 /FEA=FLmRNA /CNT=2 /TID=Rn.48772.1 /TIER=FL /STK=2 /UG=Rn.48772 /LL=64618 /DEF=Rattus norvegicus zic protein member 1 (Zic1), mRNA. /PROD=zic protein member 1 /FL=gb:NM_022677.1 gb:AF221839.1 NM_022677 Zic family member 1 (odd-paired homolog, Drosophila) Zic1 64618 NM_022677 0007389 // pattern specification process // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007417 // central nervous system development // not recorded /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007610 // behavior // inferred from electronic annotation /// 0007610 // behavior // not recorded /// 0008589 // regulation of smoothened signaling pathway // inferred from electronic annotation /// 0008589 // regulation of smoothened signaling pathway // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1369525_at NM_133293 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133293.1 /DB_XREF=gi:18959227 /GEN=Gata3 /FEA=FLmRNA /CNT=2 /TID=Rn.64649.1 /TIER=FL /STK=2 /UG=Rn.64649 /LL=85471 /DEF=Rattus norvegicus GATA-binding protein 3 (Gata3), mRNA. /PROD=GATA-binding protein 3 /FL=gb:NM_133293.1 gb:AY024364.1 NM_133293 GATA binding protein 3 Gata3 85471 NM_133293 0001709 // cell fate determination // inferred from electronic annotation /// 0001709 // cell fate determination // not recorded /// 0001806 // type IV hypersensitivity // inferred from expression pattern /// 0001823 // mesonephros development // inferred from electronic annotation /// 0001823 // mesonephros development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010332 // response to gamma radiation // inferred from expression pattern /// 0032753 // positive regulation of interleukin-4 production // inferred from electronic annotation /// 0032753 // positive regulation of interleukin-4 production // not recorded /// 0042035 // regulation of cytokine biosynthetic process // inferred from electronic annotation /// 0042035 // regulation of cytokine biosynthetic process // not recorded /// 0042421 // norepinephrine biosynthetic process // inferred from electronic annotation /// 0042421 // norepinephrine biosynthetic process // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043627 // response to estrogen stimulus // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048485 // sympathetic nervous system development // inferred from electronic annotation /// 0048485 // sympathetic nervous system development // not recorded /// 0048646 // anatomical structure formation involved in morphogenesis // inferred from electronic annotation /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from mutant phenotype /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369526_at NM_013084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013084.1 /DB_XREF=gi:6978432 /GEN=Acadsb /FEA=FLmRNA /CNT=2 /TID=Rn.44423.1 /TIER=FL /STK=2 /UG=Rn.44423 /LL=25618 /DEF=Rattus norvegicus Acyl-Coenzyme A dehydrogenase, short-branched chain (Acadsb), mRNA. /PROD=acyl-Coenzyme A dehydrogenase, short-branchedchain /FL=gb:U64451.1 gb:NM_013084.1 NM_013084 acyl-Coenzyme A dehydrogenase, short/branched chain Acadsb 25618 NM_013084 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // traceable author statement /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // traceable author statement /// 0006637 // acyl-CoA metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0003995 // acyl-CoA dehydrogenase activity // inferred from direct assay /// 0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation /// 0016937 // short-branched-chain-acyl-CoA dehydrogenase activity // inferred from direct assay /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1369527_at NM_133534 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133534.1 /DB_XREF=gi:19424189 /GEN=Rbs11 /FEA=FLmRNA /CNT=2 /TID=Rn.10482.1 /TIER=FL /STK=2 /UG=Rn.10482 /LL=171056 /DEF=Rattus norvegicus Rbs11 protein (Rbs11), mRNA. /PROD=Rbs11 protein /FL=gb:NM_133534.1 gb:U04808.1 NM_133534 chemokine (C-X3-C motif) receptor 1 Cx3cr1 171056 NM_133534 0002282 // microglial cell activation involved in immune response // inferred from electronic annotation /// 0002282 // microglial cell activation involved in immune response // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // not recorded /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0021795 // cerebral cortex cell migration // inferred from electronic annotation /// 0021795 // cerebral cortex cell migration // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0048246 // macrophage chemotaxis // inferred from electronic annotation /// 0048246 // macrophage chemotaxis // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // not recorded /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004950 // chemokine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369528_at NM_013095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013095.1 /DB_XREF=gi:6981173 /GEN=Madh3 /FEA=FLmRNA /CNT=2 /TID=Rn.10636.1 /TIER=FL /STK=2 /UG=Rn.10636 /LL=25631 /DEF=Rattus norvegicus MAD (mothers against decapentaplegic, Drosophila) homolog 3 (Madh3), mRNA. /PROD=MAD (mothers against decapentaplegic,Drosophila) homolog 3 /FL=gb:U66479.1 gb:NM_013095.1 NM_013095 SMAD family member 3 Smad3 25631 NM_013095 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0001707 // mesoderm formation // not recorded /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001756 // somitogenesis // not recorded /// 0001836 // release of cytochrome c from mitochondria // inferred from mutant phenotype /// 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0001933 // negative regulation of protein phosphorylation // not recorded /// 0001947 // heart looping // inferred from electronic annotation /// 0001947 // heart looping // not recorded /// 0002076 // osteoblast development // inferred from electronic annotation /// 0002076 // osteoblast development // not recorded /// 0002520 // immune system development // inferred from electronic annotation /// 0002520 // immune system development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006810 // transport // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0006955 // immune response // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007183 // SMAD protein complex assembly // inferred from physical interaction /// 0007183 // SMAD protein complex assembly // not recorded /// 0007183 // SMAD protein complex assembly // inferred from electronic annotation /// 0007369 // gastrulation // inferred from electronic annotation /// 0007369 // gastrulation // not recorded /// 0007492 // endoderm development // inferred from electronic annotation /// 0007492 // endoderm development // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008633 // activation of pro-apoptotic gene products // inferred from mutant phenotype /// 0008637 // apoptotic mitochondrial changes // inferred from mutant phenotype /// 0009880 // embryonic pattern specification // inferred from electronic annotation /// 0009880 // embryonic pattern specification // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from direct assay /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from direct assay /// 0010694 // positive regulation of alkaline phosphatase activity // inferred from direct assay /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from electronic annotation /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0016202 // regulation of striated muscle tissue development // inferred from electronic annotation /// 0016202 // regulation of striated muscle tissue development // not recorded /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0019049 // evasion of host defenses by virus // inferred from electronic annotation /// 0019049 // evasion of host defenses by virus // not recorded /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030501 // positive regulation of bone mineralization // inferred from direct assay /// 0030878 // thyroid gland development // inferred from electronic annotation /// 0030878 // thyroid gland development // not recorded /// 0032731 // positive regulation of interleukin-1 beta production // inferred from mutant phenotype /// 0032909 // regulation of transforming growth factor-beta2 production // inferred from electronic annotation /// 0032909 // regulation of transforming growth factor-beta2 production // not recorded /// 0032916 // positive regulation of transforming growth factor-beta3 production // inferred from mutant phenotype /// 0035413 // positive regulation of catenin protein nuclear translocation // not recorded /// 0042110 // T cell activation // inferred from electronic annotation /// 0042110 // T cell activation // not recorded /// 0042177 // negative regulation of protein catabolic process // not recorded /// 0042993 // positive regulation of transcription factor import into nucleus // inferred from electronic annotation /// 0042993 // positive regulation of transcription factor import into nucleus // not recorded /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0045216 // cell-cell junction organization // inferred from electronic annotation /// 0045216 // cell-cell junction organization // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045668 // negative regulation of osteoblast differentiation // inferred from electronic annotation /// 0045668 // negative regulation of osteoblast differentiation // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045930 // negative regulation of mitotic cell cycle // inferred from electronic annotation /// 0045930 // negative regulation of mitotic cell cycle // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048340 // paraxial mesoderm morphogenesis // inferred from electronic annotation /// 0048340 // paraxial mesoderm morphogenesis // not recorded /// 0048589 // developmental growth // inferred from electronic annotation /// 0048589 // developmental growth // not recorded /// 0048617 // embryonic foregut morphogenesis // inferred from electronic annotation /// 0048617 // embryonic foregut morphogenesis // not recorded /// 0048701 // embryonic cranial skeleton morphogenesis // inferred from electronic annotation /// 0048701 // embryonic cranial skeleton morphogenesis // not recorded /// 0050678 // regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050678 // regulation of epithelial cell proliferation // not recorded /// 0050776 // regulation of immune response // inferred from electronic annotation /// 0050776 // regulation of immune response // not recorded /// 0050821 // protein stabilization // not recorded /// 0050927 // positive regulation of positive chemotaxis // inferred from direct assay /// 0051098 // regulation of binding // inferred from electronic annotation /// 0051098 // regulation of binding // not recorded /// 0051496 // positive regulation of stress fiber assembly // inferred from direct assay /// 0051894 // positive regulation of focal adhesion assembly // inferred from direct assay /// 0060039 // pericardium development // inferred from electronic annotation /// 0060039 // pericardium development // not recorded /// 0060290 // transdifferentiation // inferred from direct assay /// 0070306 // lens fiber cell differentiation // inferred from electronic annotation /// 0070306 // lens fiber cell differentiation // not recorded /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005637 // nuclear inner membrane // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from mutant phenotype /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0043235 // receptor complex // inferred from electronic annotation /// 0043235 // receptor complex // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003706 // ligand-regulated transcription factor activity // inferred from mutant phenotype /// 0005160 // transforming growth factor beta receptor binding // inferred from electronic annotation /// 0005160 // transforming growth factor beta receptor binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005518 // collagen binding // inferred from electronic annotation /// 0005518 // collagen binding // not recorded /// 0008013 // beta-catenin binding // not recorded /// 0008134 // transcription factor binding // inferred from direct assay /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016566 // specific transcriptional repressor activity // inferred from direct assay /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0030618 // transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity // inferred from electronic annotation /// 0030618 // transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046332 // SMAD binding // inferred from physical interaction /// 0070410 // co-SMAD binding // inferred from electronic annotation /// 0070410 // co-SMAD binding // not recorded /// 0070412 // R-SMAD binding // inferred from electronic annotation /// 0070412 // R-SMAD binding // not recorded 1369529_at NM_017104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017104.1 /DB_XREF=gi:8393199 /GEN=Csf3 /FEA=FLmRNA /CNT=2 /TID=Rn.53973.1 /TIER=FL /STK=2 /UG=Rn.53973 /LL=25610 /DEF=Rattus norvegicus Colony stimulating factor 3 (granulocyte) (Csf3), mRNA. /PROD=colony stimulating factor 3 (granulocyte) /FL=gb:NM_017104.1 gb:U37101.1 NM_017104 colony stimulating factor 3 (granulocyte) Csf3 25610 NM_017104 0006955 // immune response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded 1369530_at NM_020471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020471.1 /DB_XREF=gi:9994170 /GEN=Isl2 /FEA=FLmRNA /CNT=2 /TID=Rn.10026.1 /TIER=FL /STK=2 /UG=Rn.10026 /LL=57233 /DEF=Rattus norvegicus insulin related protein 2 (Isl2), mRNA. /PROD=insulin related protein 2 /FL=gb:L35571.1 gb:NM_020471.1 NM_020471 ISL LIM homeobox 2 Isl2 57233 NM_020471 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0021524 // visceral motor neuron differentiation // inferred from electronic annotation /// 0021524 // visceral motor neuron differentiation // not recorded /// 0031290 // retinal ganglion cell axon guidance // inferred from electronic annotation /// 0031290 // retinal ganglion cell axon guidance // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369531_at NM_133547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133547.1 /DB_XREF=gi:19424215 /GEN=Sult1c2 /FEA=FLmRNA /CNT=2 /TID=Rn.82708.1 /TIER=FL /STK=2 /UG=Rn.82708 /LL=171072 /DEF=Rattus norvegicus sulfotransferase family, cytosolic, 1C, member 2 (Sult1c2), mRNA. /PROD=sulfotransferase family, cytosolic, 1C, member2 /FL=gb:NM_133547.1 NM_133547 sulfotransferase family, cytosolic, 1C, member 2 Sult1c2 171072 NM_133547 0051923 // sulfation // not recorded 0005764 // lysosome // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0008146 // sulfotransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation 1369532_at NM_138978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_138978.1 /DB_XREF=gi:20376823 /GEN=LOC192649 /FEA=FLmRNA /CNT=2 /TID=Affx.1.11 /TIER=FL /STK=2 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus G protein-coupled receptor I5E (LOC192649), mRNA. /PROD=G protein-coupled receptor I5E /FL=gb:NM_138978.1 gb:AY089975.1 NM_138978 prokineticin receptor 2 Prokr2 192649 NM_138978 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0007623 // circadian rhythm // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from mutant phenotype /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004983 // neuropeptide Y receptor activity // inferred from electronic annotation 1369533_a_at U20906 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U20906.1 /DB_XREF=gi:924638 /FEA=FLmRNA /CNT=1 /TID=Rn.10094.2 /TIER=FL /STK=1 /UG=Rn.10094 /LL=25324 /UG_GENE=Htr4 /DEF=Rattus norvegicus 5-HT4S receptor mRNA, complete cds. /PROD=5-HT4S receptor /FL=gb:U20906.1 U20906 5-hydroxytryptamine (serotonin) receptor 4 Htr4 25324 NM_012853 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from mutant phenotype /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0050890 // cognition // traceable author statement 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // inferred from mutant phenotype /// 0004993 // serotonin receptor activity // not recorded 1369534_at NM_133519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133519.1 /DB_XREF=gi:19424163 /GEN=Il11 /FEA=FLmRNA /CNT=2 /TID=Rn.67080.1 /TIER=FL /STK=2 /UG=Rn.67080 /LL=171040 /DEF=Rattus norvegicus interleukin 11 (Il11), mRNA. /PROD=interleukin 11 /FL=gb:NM_133519.1 gb:AF347935.1 NM_133519 interleukin 11 Il11 171040 NM_133519 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033138 // positive regulation of peptidyl-serine phosphorylation // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046888 // negative regulation of hormone secretion // inferred from electronic annotation /// 0046888 // negative regulation of hormone secretion // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005142 // interleukin-11 receptor binding // inferred from electronic annotation /// 0005142 // interleukin-11 receptor binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded 1369535_at NM_053534 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053534.1 /DB_XREF=gi:17737277 /GEN=Tpra40-pending /FEA=FLmRNA /CNT=2 /TID=Rn.40478.1 /TIER=FL /STK=2 /UG=Rn.40478 /LL=85494 /DEF=Rattus norvegicus transmembrane domain protein regulated in adipocytes 40 kDa (Tpra40-pending), mRNA. /PROD=transmembrane domain protein regulated inadipocytes 40 kDa /FL=gb:AF292116.1 gb:NM_053534.1 NM_053534 transmembrane protein, adipocyte asscociated 1 Tpra1 85494 NM_053534 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1369536_at NM_012549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012549.1 /DB_XREF=gi:6978792 /GEN=Edn2 /FEA=FLmRNA /CNT=2 /TID=Rn.10642.1 /TIER=FL /STK=2 /UG=Rn.10642 /LL=24324 /DEF=Rattus norvegicus Endothelin isopeptide 2 (Edn2), mRNA. /PROD=endothelin isopeptide 2 /FL=gb:NM_012549.1 NM_012549 endothelin 2 Edn2 24324 NM_012549 0001516 // prostaglandin biosynthetic process // inferred from electronic annotation /// 0001516 // prostaglandin biosynthetic process // not recorded /// 0001543 // ovarian follicle rupture // inferred from direct assay /// 0002690 // positive regulation of leukocyte chemotaxis // inferred from electronic annotation /// 0002690 // positive regulation of leukocyte chemotaxis // not recorded /// 0003100 // regulation of systemic arterial blood pressure by endothelin // inferred from electronic annotation /// 0003100 // regulation of systemic arterial blood pressure by endothelin // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0008217 // regulation of blood pressure // inferred from genetic interaction /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0010460 // positive regulation of heart rate // inferred from electronic annotation /// 0010460 // positive regulation of heart rate // not recorded /// 0014824 // artery smooth muscle contraction // inferred from electronic annotation /// 0014824 // artery smooth muscle contraction // not recorded /// 0014826 // vein smooth muscle contraction // inferred from electronic annotation /// 0014826 // vein smooth muscle contraction // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019229 // regulation of vasoconstriction // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // not recorded /// 0030593 // neutrophil chemotaxis // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // not recorded /// 0042116 // macrophage activation // inferred from electronic annotation /// 0042116 // macrophage activation // not recorded /// 0042310 // vasoconstriction // not recorded /// 0042310 // vasoconstriction // traceable author statement /// 0042310 // vasoconstriction // inferred from electronic annotation /// 0045987 // positive regulation of smooth muscle contraction // inferred from direct assay /// 0045987 // positive regulation of smooth muscle contraction // not recorded /// 0045987 // positive regulation of smooth muscle contraction // inferred from electronic annotation /// 0046887 // positive regulation of hormone secretion // inferred from direct assay /// 0046888 // negative regulation of hormone secretion // inferred from direct assay /// 0048016 // inositol phosphate-mediated signaling // inferred from electronic annotation /// 0048016 // inositol phosphate-mediated signaling // not recorded /// 0048246 // macrophage chemotaxis // inferred from electronic annotation /// 0048246 // macrophage chemotaxis // not recorded /// 0050880 // regulation of blood vessel size // inferred from electronic annotation /// 0060585 // positive regulation of prostaglandin-endoperoxidase synthase activity // inferred from electronic annotation /// 0060585 // positive regulation of prostaglandin-endoperoxidase synthase activity // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation /// 0005179 // hormone activity // not recorded /// 0031708 // endothelin B receptor binding // inferred from electronic annotation /// 0031708 // endothelin B receptor binding // not recorded 1369537_at NM_031758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031758.1 /DB_XREF=gi:13929067 /GEN=Gpr24 /FEA=FLmRNA /CNT=2 /TID=Rn.10822.1 /TIER=FL /STK=2 /UG=Rn.10822 /LL=83567 /DEF=Rattus norvegicus somatostatin receptor-like protein (Gpr24), mRNA. /PROD=somatostatin receptor-like protein /FL=gb:NM_031758.1 gb:AF008650.1 NM_031758 melanin-concentrating hormone receptor 1 Mchr1 83567 NM_031758 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0051928 // positive regulation of calcium ion transport // inferred from mutant phenotype 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031513 // nonmotile primary cilium // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from direct assay /// 0030273 // melanin-concentrating hormone receptor activity // inferred from direct assay /// 0030273 // melanin-concentrating hormone receptor activity // inferred from electronic annotation /// 0042562 // hormone binding // inferred from direct assay 1369538_at NM_053891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053891.1 /DB_XREF=gi:16758761 /GEN=Cdk5r /FEA=FLmRNA /CNT=2 /TID=Rn.11213.1 /TIER=FL /STK=2 /UG=Rn.11213 /LL=116671 /DEF=Rattus norvegicus cyclin-dependent kinase 5, regulatory subunit 1 (p35) (Cdk5r), mRNA. /PROD=cyclin-dependent kinase 5, regulatory subunit 1(p35) /FL=gb:NM_053891.1 gb:U50707.1 NM_053891 cyclin-dependent kinase 5, regulatory subunit 1 Cdk5r1 116671 NM_053891 0001764 // neuron migration // not recorded /// 0001764 // neuron migration // inferred from sequence or structural similarity /// 0001764 // neuron migration // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0007158 // neuron cell-cell adhesion // not recorded /// 0007158 // neuron cell-cell adhesion // inferred from sequence or structural similarity /// 0007158 // neuron cell-cell adhesion // inferred from electronic annotation /// 0007213 // muscarinic acetylcholine receptor signaling pathway // inferred from direct assay /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from sequence or structural similarity /// 0007411 // axon guidance // inferred from electronic annotation /// 0007413 // axonal fasciculation // not recorded /// 0007413 // axonal fasciculation // inferred from sequence or structural similarity /// 0007413 // axonal fasciculation // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from sequence or structural similarity /// 0007420 // brain development // inferred from electronic annotation /// 0009790 // embryo development // inferred from direct assay /// 0030182 // neuron differentiation // inferred from direct assay /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from direct assay /// 0043525 // positive regulation of neuron apoptosis // inferred from direct assay /// 0048675 // axon extension // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016533 // cyclin-dependent protein kinase 5 holoenzyme complex // inferred from direct assay /// 0016533 // cyclin-dependent protein kinase 5 holoenzyme complex // traceable author statement /// 0016533 // cyclin-dependent protein kinase 5 holoenzyme complex // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0031594 // neuromuscular junction // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043292 // contractile fiber // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004693 // cyclin-dependent protein kinase activity // inferred from direct assay /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from direct assay /// 0016534 // cyclin-dependent protein kinase 5 activator activity // inferred from direct assay /// 0016534 // cyclin-dependent protein kinase 5 activator activity // inferred from electronic annotation /// 0043539 // protein serine/threonine kinase activator activity // inferred from direct assay /// 0045296 // cadherin binding // inferred from direct assay 1369539_at NM_031697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031697.1 /DB_XREF=gi:13928971 /GEN=Siat6 /FEA=FLmRNA /CNT=2 /TID=Rn.44390.1 /TIER=FL /STK=2 /UG=Rn.44390 /LL=64445 /DEF=Rattus norvegicus sialyltransferase (N-acetyllacosaminide alpha 2,3-sialyltransferase) (Siat6), mRNA. /PROD=sialyltransferase 3 /FL=gb:M97754.1 gb:NM_031697.1 NM_031697 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 St3gal3 64445 NM_031697 0006486 // protein glycosylation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0008118 // N-acetyllactosaminide alpha-2,3-sialyltransferase activity // traceable author statement /// 0008118 // N-acetyllactosaminide alpha-2,3-sialyltransferase activity // inferred from electronic annotation /// 0008373 // sialyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1369540_at NM_022302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022302.1 /DB_XREF=gi:11560136 /GEN=STIP1 /FEA=FLmRNA /CNT=2 /TID=Rn.64485.1 /TIER=FL /STK=2 /UG=Rn.64485 /LL=64169 /DEF=Rattus norvegicus synaptotagmin interacting protein 1 (STIP1), mRNA. /PROD=synaptotagmin interacting protein 1 /FL=gb:NM_022302.1 gb:AF193755.1 NM_022302 N-terminal EF-hand calcium binding protein 1 Necab1 64169 NM_022302 0017000 // antibiotic biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1369541_at NM_031613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031613.1 /DB_XREF=gi:13928837 /GEN=Tmod2 /FEA=FLmRNA /CNT=2 /TID=Rn.74047.1 /TIER=FL /STK=2 /UG=Rn.74047 /LL=58814 /DEF=Rattus norvegicus tropomodulin 2 (Tmod2), mRNA. /PROD=tropomodulin 2 /FL=gb:U59240.1 gb:NM_031613.1 NM_031613 tropomodulin 2 Tmod2 58814 NM_031613 0007015 // actin filament organization // traceable author statement /// 0007270 // nerve-nerve synaptic transmission // inferred from electronic annotation /// 0007270 // nerve-nerve synaptic transmission // not recorded /// 0007611 // learning or memory // inferred from electronic annotation /// 0007611 // learning or memory // not recorded /// 0045745 // positive regulation of G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0045745 // positive regulation of G-protein coupled receptor protein signaling pathway // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030426 // growth cone // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay 0003779 // actin binding // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotation /// 0005523 // tropomyosin binding // inferred from direct assay /// 0005523 // tropomyosin binding // inferred from electronic annotation 1369542_at NM_138977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_138977.1 /DB_XREF=gi:20376821 /GEN=LOC192648 /FEA=FLmRNA /CNT=2 /TID=Affx.1.12 /TIER=FL /STK=2 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus G protein-coupled receptor ZAQ (LOC192648), mRNA. /PROD=G protein-coupled receptor ZAQ /FL=gb:AY089974.1 gb:NM_138977.1 NM_138977 prokineticin receptor 1 Prokr1 192648 NM_138977 0006916 // anti-apoptosis // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from mutant phenotype /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004983 // neuropeptide Y receptor activity // inferred from electronic annotation 1369543_s_at NM_138856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_138856.1 /DB_XREF=gi:20302007 /GEN=Gs3 /FEA=FLmRNA /CNT=2 /TID=Affx.1.13 /TIER=FL /STK=2 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus putative regulation protein GS3 (Gs3), mRNA. /PROD=putative regulation protein GS3 /FL=gb:NM_138856.1 gb:AF492384.1 NM_138856 DnaJ (Hsp40) homolog, subfamily C, member 21 Dnajc21 192210 NM_138856 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369544_a_at U93093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U93093.1 /DB_XREF=gi:1929021 /GEN=HoxA1 /FEA=FLmRNA /CNT=1 /TID=Rn.9780.2 /TIER=FL /STK=1 /UG=Rn.9780 /LL=25607 /DEF=Rattus norvegicus homeobox-minus HoxA1 protein (HoxA1) mRNA, alternatively spliced form, complete cds. /PROD=homeobox-minus HoxA1 protein /FL=gb:U93093.1 U93093 homeo box A1 Hoxa1 25607 NM_013075 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0008045 // motor axon guidance // inferred from electronic annotation /// 0008045 // motor axon guidance // not recorded /// 0009653 // anatomical structure morphogenesis // not recorded /// 0009653 // anatomical structure morphogenesis // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0021569 // rhombomere 3 development // inferred from electronic annotation /// 0021569 // rhombomere 3 development // not recorded /// 0021570 // rhombomere 4 development // inferred from electronic annotation /// 0021570 // rhombomere 4 development // not recorded /// 0021571 // rhombomere 5 development // inferred from electronic annotation /// 0021571 // rhombomere 5 development // not recorded /// 0021612 // facial nerve structural organization // inferred from electronic annotation /// 0021612 // facial nerve structural organization // not recorded /// 0021754 // facial nucleus development // inferred from electronic annotation /// 0021754 // facial nucleus development // not recorded /// 0021953 // central nervous system neuron differentiation // inferred from electronic annotation /// 0021953 // central nervous system neuron differentiation // not recorded /// 0030902 // hindbrain development // inferred from electronic annotation /// 0030902 // hindbrain development // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048646 // anatomical structure formation involved in morphogenesis // inferred from electronic annotation /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1369545_at NM_017086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017086.1 /DB_XREF=gi:8393304 /GEN=Egr3 /FEA=FLmRNA /CNT=2 /TID=Rn.44371.1 /TIER=FL /STK=2 /UG=Rn.44371 /LL=25148 /DEF=Rattus norvegicus Early growth response 3 (Egr3), mRNA. /PROD=early growth response 3 /FL=gb:U12428.1 gb:NM_017086.1 NM_017086 early growth response 3 Egr3 25148 NM_017086 0006350 // transcription // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0007422 // peripheral nervous system development // inferred from electronic annotation /// 0007422 // peripheral nervous system development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369546_at NM_022629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022629.1 /DB_XREF=gi:12018319 /GEN=Bbox /FEA=FLmRNA /CNT=2 /TID=Rn.48746.1 /TIER=FL /STK=2 /UG=Rn.48746 /LL=64564 /DEF=Rattus norvegicus gamma-butyrobetaine hydroxylase (Bbox), mRNA. /PROD=gamma-butyrobetaine hydroxylase /FL=gb:AF160958.1 gb:NM_022629.1 NM_022629 butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1 Bbox1 64564 NM_022629 0045329 // carnitine biosynthetic process // not recorded /// 0045329 // carnitine biosynthetic process // inferred from sequence or structural similarity /// 0045329 // carnitine biosynthetic process // traceable author statement /// 0045329 // carnitine biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005506 // iron ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0008336 // gamma-butyrobetaine dioxygenase activity // inferred from mutant phenotype /// 0008336 // gamma-butyrobetaine dioxygenase activity // not recorded /// 0008336 // gamma-butyrobetaine dioxygenase activity // inferred from sequence or structural similarity /// 0008336 // gamma-butyrobetaine dioxygenase activity // traceable author statement /// 0008336 // gamma-butyrobetaine dioxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0016706 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369547_at NM_130404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130404.1 /DB_XREF=gi:18426821 /GEN=Serpinb7 /FEA=FLmRNA /CNT=2 /TID=Rn.81065.1 /TIER=FL /STK=2 /UG=Rn.81065 /DEF=Rattus norvegicus serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 7 (Serpinb7), mRNA. /PROD=serine (or cysteine) proteinase inhibitor, cladeB (ovalbumin), member 7 /FL=gb:AF105329.1 gb:NM_130404.1 NM_130404 serine (or cysteine) peptidase inhibitor, clade B, member 7 Serpinb7 117092 NM_130404 0015870 // acetylcholine transport // inferred from direct assay 0004867 // serine-type endopeptidase inhibitor activity // inferred from direct assay /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation 1369548_at NM_022208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022208.1 /DB_XREF=gi:11559983 /GEN=Tf2a /FEA=FLmRNA /CNT=2 /TID=Rn.44436.1 /TIER=FL /STK=2 /UG=Rn.44436 /LL=60631 /DEF=Rattus norvegicus TFIIA large subunit (Tf2a), mRNA. /PROD=TFIIA large subunit /FL=gb:AF000943.1 gb:NM_022208.1 NM_022208 general transcription factor IIA, 1 Gtf2a1 83830 NM_022208 0006350 // transcription // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0032568 // general transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0032568 // general transcription from RNA polymerase II promoter // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005672 // transcription factor TFIIA complex // inferred from electronic annotation /// 0005672 // transcription factor TFIIA complex // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0016251 // general RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0016251 // general RNA polymerase II transcription factor activity // not recorded /// 0017025 // TATA-binding protein binding // inferred from electronic annotation /// 0017025 // TATA-binding protein binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1369549_at NM_133512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133512.1 /DB_XREF=gi:19424149 /GEN=Nkrp2 /FEA=FLmRNA /CNT=2 /TID=Rn.14544.1 /TIER=FL /STK=2 /UG=Rn.14544 /LL=24934 /DEF=Rattus norvegicus NKR-P2, ortholog of human NKG2D (Nkrp2), mRNA. /PROD=NKR-P2, ortholog of human NKG2D /FL=gb:NM_133512.1 gb:AF009511.1 NM_133512 killer cell lectin-like receptor subfamily K, member 1 Klrk1 24934 NM_133512 0002223 // stimulatory C-type lectin receptor signaling pathway // inferred from electronic annotation /// 0002223 // stimulatory C-type lectin receptor signaling pathway // not recorded /// 0007165 // signal transduction // not recorded /// 0030101 // natural killer cell activation // inferred from electronic annotation /// 0030101 // natural killer cell activation // not recorded /// 0032729 // positive regulation of interferon-gamma production // inferred from electronic annotation /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045429 // positive regulation of nitric oxide biosynthetic process // not recorded /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // inferred from electronic annotation /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // not recorded 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from electronic annotation /// 0032394 // MHC class Ib receptor activity // inferred from electronic annotation /// 0032394 // MHC class Ib receptor activity // not recorded /// 0042288 // MHC class I protein binding // inferred from electronic annotation /// 0042288 // MHC class I protein binding // not recorded /// 0045233 // natural killer cell receptor activity // inferred from direct assay 1369550_at NM_019151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019151.1 /DB_XREF=gi:9506906 /GEN=Gdf8 /FEA=FLmRNA /CNT=2 /TID=Rn.44460.1 /TIER=FL /STK=2 /UG=Rn.44460 /LL=29152 /DEF=Rattus norvegicus growth differentiation factor 8 (Gdf8), mRNA. /PROD=growth differentiation factor 8 /FL=gb:NM_019151.1 gb:AF019624.1 NM_019151 myostatin Mstn 29152 NM_019151 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0009408 // response to heat // inferred from expression pattern /// 0009629 // response to gravity // inferred from expression pattern /// 0014732 // skeletal muscle atrophy // inferred from expression pattern /// 0014741 // negative regulation of muscle hypertrophy // inferred from mutant phenotype /// 0014850 // response to muscle activity // inferred from expression pattern /// 0022602 // ovulation cycle process // inferred from expression pattern /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0040007 // growth // inferred from electronic annotation /// 0043403 // skeletal muscle tissue regeneration // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0048632 // negative regulation of skeletal muscle tissue growth // inferred from mutant phenotype /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051602 // response to electrical stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation 1369551_at NM_022255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022255.1 /DB_XREF=gi:11560066 /GEN=Sreb3 /FEA=FLmRNA /CNT=2 /TID=Rn.53986.1 /TIER=FL /STK=2 /UG=Rn.53986 /LL=64021 /DEF=Rattus norvegicus SREB3 (Sreb3), mRNA. /PROD=SREB3 /FL=gb:NM_022255.1 gb:AB040804.1 NM_022255 G-protein coupled receptor 173 Gpr173 64021 NM_022255 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1369552_at NM_130821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130821.1 /DB_XREF=gi:18677752 /GEN=Samsn1 /FEA=FLmRNA /CNT=2 /TID=Rn.81187.1 /TIER=FL /STK=2 /UG=Rn.81187 /DEF=Rattus norvegicus SAM domain, SH3 domain and nuclear localisation signals, 1 (Samsn1), mRNA. /PROD=SAM domain, SH3 domain and nuclear localisationsignals, 1 /FL=gb:NM_130821.1 gb:AB067679.1 NM_130821 SAM domain, SH3 domain and nuclear localization signals, 1 Samsn1 170637 NM_130821 0001784 // phosphotyrosine binding // not recorded /// 0005515 // protein binding // not recorded 1369553_at NM_054007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_054007.1 /DB_XREF=gi:16758925 /GEN=Hsd17b3 /FEA=FLmRNA /CNT=2 /TID=Rn.10895.1 /TIER=FL /STK=2 /UG=Rn.10895 /LL=117182 /DEF=Rattus norvegicus hydroxysteroid 17-beta dehydrogenase 3 (Hsd17b3), mRNA. /PROD=hydroxysteroid 17-beta dehydrogenase 3 /FL=gb:AF035156.1 gb:NM_054007.1 NM_054007 hydroxysteroid (17-beta) dehydrogenase 3 Hsd17b3 117182 NM_054007 0006694 // steroid biosynthetic process // inferred from direct assay /// 0006694 // steroid biosynthetic process // not recorded /// 0006694 // steroid biosynthetic process // traceable author statement /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005792 // microsome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004303 // estradiol 17-beta-dehydrogenase activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0047045 // testosterone 17-beta-dehydrogenase (NADP+) activity // inferred from electronic annotation /// 0050327 // testosterone 17-beta-dehydrogenase activity // inferred from direct assay 1369554_at NM_053553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053553.1 /DB_XREF=gi:16758321 /GEN=Syngr2 /FEA=FLmRNA /CNT=2 /TID=Rn.34912.1 /TIER=FL /STK=2 /UG=Rn.34912 /LL=89815 /DEF=Rattus norvegicus synaptogyrin 2 (Syngr2), mRNA. /PROD=synaptogyrin 2 /FL=gb:AF039085.1 gb:NM_053553.1 NM_053553 synaptogyrin 2 Syngr2 89815 NM_053553 0006605 // protein targeting // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 1369555_at NM_133532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133532.1 /DB_XREF=gi:19424185 /GEN=Cmkbr4 /FEA=FLmRNA /CNT=2 /TID=Rn.81076.1 /TIER=FL /STK=2 /UG=Rn.81076 /DEF=Rattus norvegicus chemokine (C-C) receptor 4 (Cmkbr4), mRNA. /PROD=chemokine (C-C) receptor 4 /FL=gb:NM_133532.1 gb:AF432872.1 NM_133532 chemokine (C-C motif) receptor 4 Ccr4 171054 NM_133532 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0002507 // tolerance induction // inferred from electronic annotation /// 0002507 // tolerance induction // not recorded /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006935 // chemotaxis // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0009314 // response to radiation // inferred from expression pattern /// 0009617 // response to bacterium // inferred from expression pattern /// 0046677 // response to antibiotic // inferred from expression pattern /// 0050927 // positive regulation of positive chemotaxis // inferred from direct assay /// 0051789 // response to protein stimulus // inferred from expression pattern 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0016493 // C-C chemokine receptor activity // not recorded /// 0016493 // C-C chemokine receptor activity // traceable author statement /// 0016493 // C-C chemokine receptor activity // inferred from electronic annotation 1369556_at NM_053640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053640.1 /DB_XREF=gi:16758449 /GEN=Ltb4r2 /FEA=FLmRNA /CNT=2 /TID=Rn.74251.1 /TIER=FL /STK=2 /UG=Rn.74251 /LL=114098 /DEF=Rattus norvegicus leukotriene B4 receptor 2 (Ltb4r2), mRNA. /PROD=leukotriene B4 receptor 2 /FL=gb:NM_053640.1 gb:AB052660.1 NM_053640 leukotriene B4 receptor 2 Ltb4r2 114098 NM_053640 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0051546 // keratinocyte migration // inferred from electronic annotation /// 0051546 // keratinocyte migration // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001632 // leukotriene B4 receptor activity // inferred from electronic annotation /// 0001632 // leukotriene B4 receptor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004974 // leukotriene receptor activity // inferred from electronic annotation 1369557_at NM_022260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022260.1 /DB_XREF=gi:11560074 /GEN=Casp7 /FEA=FLmRNA /CNT=2 /TID=Rn.53995.1 /TIER=FL /STK=2 /UG=Rn.53995 /LL=64026 /DEF=Rattus norvegicus caspase-7 (Casp7), mRNA. /PROD=caspase-7 /FL=gb:NM_022260.1 gb:AF072124.1 NM_022260 caspase 7 Casp7 64026 NM_022260 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // not recorded /// 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptosis // traceable author statement /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0009411 // response to UV // inferred from electronic annotation /// 0009411 // response to UV // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004197 // cysteine-type endopeptidase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008234 // cysteine-type peptidase activity // inferred from direct assay /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1369558_at NM_022614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022614.1 /DB_XREF=gi:12018291 /GEN=Inhbc /FEA=FLmRNA /CNT=2 /TID=Rn.48697.1 /TIER=FL /STK=2 /UG=Rn.48697 /LL=64549 /DEF=Rattus norvegicus activininhibin beta C (Inhbc), mRNA. /PROD=activininhibin beta C /FL=gb:NM_022614.1 gb:AF140031.1 NM_022614 inhibin beta C Inhbc 64549 NM_022614 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation 1369559_a_at NM_019195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019195.1 /DB_XREF=gi:9506468 /GEN=Itgp /FEA=FLmRNA /CNT=2 /TID=Rn.7409.1 /TIER=FL /STK=2 /UG=Rn.7409 /LL=29364 /DEF=Rattus norvegicus integrin-associated protein (Itgp), mRNA. /PROD=integrin-associated protein /FL=gb:D87659.1 gb:NM_019195.1 NM_019195 Cd47 molecule Cd47 29364 NM_019195 0007155 // cell adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0008228 // opsonization // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0009617 // response to bacterium // not recorded /// 0016477 // cell migration // inferred from direct assay /// 0022409 // positive regulation of cell-cell adhesion // not recorded /// 0050729 // positive regulation of inflammatory response // not recorded /// 0050766 // positive regulation of phagocytosis // not recorded /// 0050870 // positive regulation of T cell activation // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // not recorded 0005515 // protein binding // not recorded /// 0070053 // thrombospondin receptor activity // not recorded 1369560_at NM_022215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022215.1 /DB_XREF=gi:11559997 /GEN=Gpd3 /FEA=FLmRNA /CNT=2 /TID=Rn.44452.1 /TIER=FL /STK=2 /UG=Rn.44452 /LL=60666 /DEF=Rattus norvegicus glycerol 3-phosphate dehydrogenase (Gpd3), mRNA. /PROD=glycerol 3-phosphate dehydrogenase /FL=gb:AB002558.1 gb:NM_022215.1 NM_022215 glycerol-3-phosphate dehydrogenase 1 (soluble) Gpd1 60666 NM_022215 0005975 // carbohydrate metabolic process // inferred from direct assay /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006072 // glycerol-3-phosphate metabolic process // inferred from direct assay /// 0006072 // glycerol-3-phosphate metabolic process // not recorded /// 0006072 // glycerol-3-phosphate metabolic process // inferred from electronic annotation /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006094 // gluconeogenesis // not recorded /// 0006116 // NADH oxidation // inferred from direct assay /// 0006734 // NADH metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0046168 // glycerol-3-phosphate catabolic process // inferred from electronic annotation /// 0046486 // glycerolipid metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0009331 // glycerol-3-phosphate dehydrogenase complex // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004367 // glycerol-3-phosphate dehydrogenase [NAD+] activity // inferred from direct assay /// 0004367 // glycerol-3-phosphate dehydrogenase [NAD+] activity // not recorded /// 0004367 // glycerol-3-phosphate dehydrogenase [NAD+] activity // traceable author statement /// 0004367 // glycerol-3-phosphate dehydrogenase [NAD+] activity // inferred from electronic annotation /// 0004368 // glycerol-3-phosphate dehydrogenase activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016614 // oxidoreductase activity, acting on CH-OH group of donors // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from direct assay /// 0051287 // NAD or NADH binding // inferred from electronic annotation 1369561_at NM_053641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053641.1 /DB_XREF=gi:16758451 /GEN=Cyslt1 /FEA=FLmRNA /CNT=2 /TID=Rn.74253.1 /TIER=FL /STK=2 /UG=Rn.74253 /LL=114099 /DEF=Rattus norvegicus cysteinyl leukotriene receptor 1 (Cyslt1), mRNA. /PROD=cysteinyl leukotriene receptor 1 /FL=gb:AB052685.1 gb:NM_053641.1 NM_053641 cysteinyl leukotriene receptor 1 Cysltr1 114099 NM_053641 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006935 // chemotaxis // not recorded /// 0006954 // inflammatory response // inferred from direct assay /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004974 // leukotriene receptor activity // inferred from direct assay /// 0004974 // leukotriene receptor activity // not recorded /// 0004974 // leukotriene receptor activity // inferred from electronic annotation 1369562_at NM_017356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017356.1 /DB_XREF=gi:8393863 /GEN=NVP-3 /FEA=FLmRNA /CNT=2 /TID=Rn.9661.1 /TIER=FL /STK=2 /UG=Rn.9661 /LL=50871 /DEF=Rattus norvegicus neural visinin-like Ca2+-binding protein type 3 (NVP-3), mRNA. /PROD=neural visinin-like Ca2+-binding protein type 3 /FL=gb:D13126.1 gb:NM_017356.1 NM_017356 hippocalcin-like 1 Hpcal1 50871 NM_017356 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369563_at NM_022636 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022636.1 /DB_XREF=gi:12018333 /GEN=Vax1 /FEA=FLmRNA /CNT=2 /TID=Rn.48764.1 /TIER=FL /STK=2 /UG=Rn.48764 /LL=64571 /DEF=Rattus norvegicus ventral anterior homeobox 1 (Vax1), mRNA. /PROD=ventral anterior homeobox 1 /FL=gb:NM_022636.1 gb:AF113515.1 NM_022636 ventral anterior homeobox 1 Vax1 64571 NM_022636 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007406 // negative regulation of neuroblast proliferation // inferred from electronic annotation /// 0007406 // negative regulation of neuroblast proliferation // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007417 // central nervous system development // not recorded /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0043010 // camera-type eye development // inferred from electronic annotation /// 0043010 // camera-type eye development // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0031490 // chromatin DNA binding // inferred from electronic annotation /// 0031490 // chromatin DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1369564_at NM_022685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022685.1 /DB_XREF=gi:12083632 /GEN=Rem2 /FEA=FLmRNA /CNT=2 /TID=Rn.48804.1 /TIER=FL /STK=2 /UG=Rn.48804 /LL=64626 /DEF=Rattus norvegicus Ras-related GTP-binding protein of the RadGemKir family (Rem2), mRNA. /PROD=GTP-binding protein REM2 /FL=gb:NM_022685.1 gb:AF084464.1 NM_022685 RAS (RAD and GEM) like GTP binding 2 Rem2 64626 NM_022685 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation 1369565_at NM_022611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022611.1 /DB_XREF=gi:12018287 /GEN=AF133197 /FEA=FLmRNA /CNT=2 /TID=Rn.48686.1 /TIER=FL /STK=2 /UG=Rn.48686 /LL=64546 /DEF=Rattus norvegicus interleukin-12 p40 precursor (AF133197), mRNA. /PROD=interleukin-12 p40 precursor /FL=gb:NM_022611.1 gb:AF133197.1 NM_022611 interleukin 12b Il12b 64546 NM_022611 0002323 // natural killer cell activation involved in immune response // inferred from mutant phenotype /// 0002860 // positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target // inferred from electronic annotation /// 0002860 // positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target // not recorded /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0010224 // response to UV-B // inferred from electronic annotation /// 0010224 // response to UV-B // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0019233 // sensory perception of pain // inferred from direct assay /// 0030101 // natural killer cell activation // not recorded /// 0030101 // natural killer cell activation // inferred from electronic annotation /// 0032729 // positive regulation of interferon-gamma production // inferred from electronic annotation /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0032816 // positive regulation of natural killer cell activation // inferred from electronic annotation /// 0032816 // positive regulation of natural killer cell activation // not recorded /// 0034393 // positive regulation of smooth muscle cell apoptosis // inferred from electronic annotation /// 0034393 // positive regulation of smooth muscle cell apoptosis // not recorded /// 0042093 // T-helper cell differentiation // inferred from electronic annotation /// 0042093 // T-helper cell differentiation // not recorded /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042104 // positive regulation of activated T cell proliferation // inferred from electronic annotation /// 0042104 // positive regulation of activated T cell proliferation // not recorded /// 0042832 // defense response to protozoan // inferred from electronic annotation /// 0042832 // defense response to protozoan // not recorded /// 0044130 // negative regulation of growth of symbiont in host // inferred from electronic annotation /// 0044130 // negative regulation of growth of symbiont in host // not recorded /// 0045785 // positive regulation of cell adhesion // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // not recorded /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048662 // negative regulation of smooth muscle cell proliferation // not recorded /// 0050671 // positive regulation of lymphocyte proliferation // not recorded /// 0050671 // positive regulation of lymphocyte proliferation // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0043514 // interleukin-12 complex // inferred from direct assay /// 0043514 // interleukin-12 complex // not recorded /// 0043514 // interleukin-12 complex // inferred from electronic annotation 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0042164 // interleukin-12 alpha subunit binding // inferred from direct assay /// 0042164 // interleukin-12 alpha subunit binding // not recorded /// 0042164 // interleukin-12 alpha subunit binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 1369566_at NM_023993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023993.1 /DB_XREF=gi:13027409 /GEN=T2R1 /FEA=FLmRNA /CNT=2 /TID=Rn.48782.1 /TIER=FL /STK=2 /UG=Rn.48782 /LL=78979 /DEF=Rattus norvegicus taste receptor (T2R1), mRNA. /PROD=taste receptor T2R1 /FL=gb:AF227140.1 gb:NM_023993.1 NM_023993 taste receptor, type 2, member 119 Tas2r119 78979 NM_023993 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0008527 // taste receptor activity // traceable author statement 1369567_at NM_134328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134328.1 /DB_XREF=gi:19705432 /GEN=Tar1 /FEA=FLmRNA /CNT=2 /TID=Rn.81209.1 /TIER=FL /STK=2 /UG=Rn.81209 /DEF=Rattus norvegicus trace amine receptor 1 (Tar1), mRNA. /PROD=trace amine receptor 1 /FL=gb:NM_134328.1 gb:AF421352.1 NM_134328 trace-amine-associated receptor 1 Taar1 113914 NM_134328 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001594 // trace-amine receptor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0008227 // G-protein coupled amine receptor activity // not recorded 1369568_at NM_031665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031665.1 /DB_XREF=gi:13928921 /GEN=Stx6 /FEA=FLmRNA /CNT=2 /TID=Rn.10551.1 /TIER=FL /STK=2 /UG=Rn.10551 /LL=60562 /DEF=Rattus norvegicus syntaxin 6 (Stx6), mRNA. /PROD=syntaxin 6 /FL=gb:NM_031665.1 gb:U56815.1 NM_031665 syntaxin 6 Stx6 60562 NM_031665 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006906 // vesicle fusion // inferred from electronic annotation /// 0006906 // vesicle fusion // not recorded /// 0007032 // endosome organization // inferred from electronic annotation /// 0007032 // endosome organization // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from direct assay /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0048193 // Golgi vesicle transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005769 // early endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1369569_at NM_031710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031710.1 /DB_XREF=gi:13928993 /GEN=Olfr41 /FEA=FLmRNA /CNT=2 /TID=Rn.44385.1 /TIER=FL /STK=2 /UG=Rn.44385 /LL=65140 /DEF=Rattus norvegicus olfactory receptor 41 (Olfr41), mRNA. /PROD=olfactory receptor 41 /FL=gb:NM_031710.1 gb:M64386.1 NM_031710 olfactory receptor 226 Olr226 65140 NM_031710 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from sequence or structural similarity 1369570_at NM_133616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133616.1 /DB_XREF=gi:19424333 /GEN=Sult2a1 /FEA=FLmRNA /CNT=2 /TID=Rn.9926.1 /TIER=FL /STK=2 /UG=Rn.9926 /LL=171153 /DEF=Rattus norvegicus sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA) -preferring, member 1 (Sult2a1), mRNA. /PROD=sulfotransferase family, cytosolic, 2A,dehydroepiandrosterone (DHEA) -preferring, member 1 /FL=gb:NM_133616.1 gb:J02643.1 NM_133616 sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 1 /// sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 2 Sult2a1 /// Sult2a2 24912 /// 361510 NM_001025131 /// NM_131903 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0008202 // steroid metabolic process // inferred from direct assay /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0014823 // response to activity // inferred from expression pattern /// 0017085 // response to insecticide // inferred from expression pattern /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0051923 // sulfation // not recorded /// 0071305 // cellular response to vitamin D // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004027 // alcohol sulfotransferase activity // inferred from direct assay /// 0004027 // alcohol sulfotransferase activity // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0008146 // sulfotransferase activity // inferred from direct assay /// 0008146 // sulfotransferase activity // not recorded /// 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0047704 // bile-salt sulfotransferase activity // inferred from electronic annotation 1369571_at NM_023977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023977.1 /DB_XREF=gi:13027433 /GEN=Gmx33 /FEA=FLmRNA /CNT=2 /TID=Rn.64519.1 /TIER=FL /STK=2 /UG=Rn.64519 /LL=78961 /DEF=Rattus norvegicus trans-Golgi protein GMx33 (Gmx33), mRNA. /PROD=trans-Golgi protein GMx33 /FL=gb:AF311954.1 gb:NM_023977.1 NM_023977 golgi phosphoprotein 3 (coat-protein) Golph3 78961 NM_023977 0008283 // cell proliferation // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0010821 // regulation of mitochondrion organization // inferred from electronic annotation /// 0010821 // regulation of mitochondrion organization // not recorded /// 0032008 // positive regulation of TOR signaling cascade // inferred from electronic annotation /// 0032008 // positive regulation of TOR signaling cascade // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369572_at NM_017145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017145.1 /DB_XREF=gi:8393763 /GEN=Mcpt1 /FEA=FLmRNA /CNT=2 /TID=Rn.10701.1 /TIER=FL /STK=2 /UG=Rn.10701 /LL=29265 /DEF=Rattus norvegicus mast cell protease 1 (Mcpt1), mRNA. /PROD=mast cell protease 1 /FL=gb:AF063851.1 gb:NM_017145.1 NM_017145 mast cell protease 1 Mcpt1 29265 NM_017145 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // non-traceable author statement /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1369573_at NM_019321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019321.1 /DB_XREF=gi:9506884 /GEN=Mcpt4 /FEA=FLmRNA /CNT=2 /TID=Rn.10698.1 /TIER=FL /STK=2 /UG=Rn.10698 /LL=54270 /DEF=Rattus norvegicus mast cell protease 4 (Mcpt4), mRNA. /PROD=mast cell protease 4 /FL=gb:NM_019321.1 gb:U67907.1 NM_019321 mast cell protease 4 Mcpt4 54270 NM_019321 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0042629 // mast cell granule // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from direct assay /// 0004252 // serine-type endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay 1369574_at NM_023998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023998.1 /DB_XREF=gi:13027468 /GEN=T2R8 /FEA=FLmRNA /CNT=2 /TID=Rn.48787.1 /TIER=FL /STK=2 /UG=Rn.48787 /LL=78984 /DEF=Rattus norvegicus taste receptor T2R8 (T2R8), mRNA. /PROD=taste receptor T2R8 /FL=gb:NM_023998.1 gb:AF227145.1 NM_023998 taste receptor, type 2, member 13 Tas2r13 78984 NM_023998 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0008527 // taste receptor activity // traceable author statement 1369575_at NM_023996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023996.1 /DB_XREF=gi:13027464 /GEN=T2R5 /FEA=FLmRNA /CNT=2 /TID=Rn.48785.1 /TIER=FL /STK=2 /UG=Rn.48785 /LL=78982 /DEF=Rattus norvegicus taste receptor T2R5 (T2R5), mRNA. /PROD=taste receptor T2R5 /FL=gb:AF227143.1 gb:NM_023996.1 NM_023996 taste receptor, type 2, member 114 Tas2r114 78982 NM_023996 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0008527 // taste receptor activity // traceable author statement 1369576_at NM_023999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023999.1 /DB_XREF=gi:13027470 /GEN=T2R9 /FEA=FLmRNA /CNT=2 /TID=Rn.48788.1 /TIER=FL /STK=2 /UG=Rn.48788 /LL=78985 /DEF=Rattus norvegicus taste receptor T2R9 (T2R9), mRNA. /PROD=taste receptor T2R9 /FL=gb:NM_023999.1 gb:AF227146.1 NM_023999 taste receptor, type 2, member 105 Tas2r105 78985 NM_023999 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from electronic annotation /// 0050913 // sensory perception of bitter taste // inferred from electronic annotation /// 0050913 // sensory perception of bitter taste // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0008527 // taste receptor activity // traceable author statement 1369577_at NM_058208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_058208.1 /DB_XREF=gi:17158026 /GEN=Cish2 /FEA=FLmRNA /CNT=2 /TID=Rn.29983.1 /TIER=FL /STK=2 /UG=Rn.29983 /LL=84607 /DEF=Rattus norvegicus cytokine inducible SH2-containing protein 2 (Cish2), mRNA. /PROD=cytokine inducible SH2-containing protein 2 /FL=gb:AF075382.1 gb:NM_058208.1 NM_058208 suppressor of cytokine signaling 2 Socs2 84607 NM_058208 0007568 // aging // inferred from expression pattern /// 0007595 // lactation // not recorded /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // not recorded /// 0032355 // response to estradiol stimulus // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // not recorded /// 0032870 // cellular response to hormone stimulus // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // not recorded /// 0040008 // regulation of growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0040015 // negative regulation of multicellular organism growth // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0046426 // negative regulation of JAK-STAT cascade // not recorded /// 0060396 // growth hormone receptor signaling pathway // inferred from electronic annotation /// 0060396 // growth hormone receptor signaling pathway // not recorded /// 0060749 // mammary gland alveolus development // not recorded 0005131 // growth hormone receptor binding // not recorded /// 0005159 // insulin-like growth factor receptor binding // not recorded /// 0005159 // insulin-like growth factor receptor binding // inferred from sequence or structural similarity /// 0005159 // insulin-like growth factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369578_at NM_023997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023997.1 /DB_XREF=gi:13027466 /GEN=T2R7 /FEA=FLmRNA /CNT=2 /TID=Rn.48786.1 /TIER=FL /STK=2 /UG=Rn.48786 /LL=78983 /DEF=Rattus norvegicus taste receptor T2R7 (T2R7), mRNA. /PROD=taste receptor T2R7 /FL=gb:AF227144.1 gb:NM_023997.1 NM_023997 taste receptor, type 2, member 121 Tas2r121 78983 NM_023997 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0008527 // taste receptor activity // traceable author statement 1369579_at NM_022230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022230.1 /DB_XREF=gi:11560025 /GEN=Stc2 /FEA=FLmRNA /CNT=2 /TID=Rn.44823.1 /TIER=FL /STK=2 /UG=Rn.44823 /LL=63878 /DEF=Rattus norvegicus stanniocalcin-2 (Stc2), mRNA. /PROD=stanniocalcin-2 /FL=gb:AB030707.1 gb:NM_022230.1 NM_022230 stanniocalcin 2 Stc2 63878 NM_022230 0007566 // embryo implantation // inferred from expression pattern /// 0033280 // response to vitamin D // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0046697 // decidualization // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation 1369580_at NM_023994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023994.1 /DB_XREF=gi:13027460 /GEN=T2R3 /FEA=FLmRNA /CNT=2 /TID=Rn.48783.1 /TIER=FL /STK=2 /UG=Rn.48783 /LL=78980 /DEF=Rattus norvegicus taste receptor (T2R3), mRNA. /PROD=taste receptor T2R3 /FL=gb:NM_023994.1 gb:AF227141.1 NM_023994 taste receptor, type 2, member 118 Tas2r118 78980 NM_023994 0001580 // detection of chemical stimulus involved in sensory perception of bitter taste // inferred from electronic annotation /// 0001580 // detection of chemical stimulus involved in sensory perception of bitter taste // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008527 // taste receptor activity // traceable author statement /// 0033038 // bitter taste receptor activity // inferred from electronic annotation /// 0033038 // bitter taste receptor activity // not recorded 1369581_at NM_013003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013003.1 /DB_XREF=gi:6981347 /GEN=Pemt /FEA=FLmRNA /CNT=2 /TID=Rn.9875.1 /TIER=FL /STK=2 /UG=Rn.9875 /LL=25511 /DEF=Rattus norvegicus Phosphatidylethanolamine N-methyltransferase (Pemt), mRNA. /PROD=phosphatidylethanolamine N-methyltransferase /FL=gb:L14441.1 gb:NM_013003.1 NM_013003 phosphatidylethanolamine N-methyltransferase Pemt 25511 NM_013003 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0006650 // glycerophospholipid metabolic process // inferred from mutant phenotype /// 0006656 // phosphatidylcholine biosynthetic process // inferred from direct assay /// 0007584 // response to nutrient // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0033273 // response to vitamin // inferred from direct assay /// 0042493 // response to drug // inferred from direct assay /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0046498 // S-adenosylhomocysteine metabolic process // inferred from direct assay /// 0046500 // S-adenosylmethionine metabolic process // inferred from direct assay /// 0050747 // positive regulation of lipoprotein metabolic process // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from direct assay 0004608 // phosphatidylethanolamine N-methyltransferase activity // inferred from direct assay /// 0004608 // phosphatidylethanolamine N-methyltransferase activity // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008170 // N-methyltransferase activity // inferred from electronic annotation /// 0008429 // phosphatidylethanolamine binding // inferred from direct assay /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation 1369582_at NM_022637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022637.1 /DB_XREF=gi:12018335 /GEN=Vax2 /FEA=FLmRNA /CNT=2 /TID=Rn.48765.1 /TIER=FL /STK=2 /UG=Rn.48765 /LL=64572 /DEF=Rattus norvegicus ventral anterior homeobox 2 (Vax2), mRNA. /PROD=ventral anterior homeobox 2 /FL=gb:AF113516.1 gb:NM_022637.1 NM_022637 ventral anterior homeobox 2 Vax2 64572 NM_022637 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0009950 // dorsal/ventral axis specification // inferred from electronic annotation /// 0009950 // dorsal/ventral axis specification // not recorded /// 0043010 // camera-type eye development // not recorded /// 0043010 // camera-type eye development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048048 // embryonic eye morphogenesis // inferred from electronic annotation /// 0048048 // embryonic eye morphogenesis // not recorded /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0031490 // chromatin DNA binding // inferred from electronic annotation /// 0031490 // chromatin DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1369583_at NM_053894 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053894.1 /DB_XREF=gi:16758765 /GEN=Jundp2 /FEA=FLmRNA /CNT=2 /TID=Rn.10721.1 /TIER=FL /STK=2 /UG=Rn.10721 /LL=116674 /DEF=Rattus norvegicus Jun dimerization protein 2 (Jundp2), mRNA. /PROD=Jun dimerization protein 2 /FL=gb:NM_053894.1 gb:U53449.1 NM_053894 Jun dimerization protein 2 Jdp2 116674 NM_053894 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046983 // protein dimerization activity // inferred from electronic annotation 1369584_at NM_053565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053565.1 /DB_XREF=gi:16758335 /GEN=Cish3 /FEA=FLmRNA /CNT=2 /TID=Rn.29984.1 /TIER=FL /STK=2 /UG=Rn.29984 /LL=89829 /DEF=Rattus norvegicus cytokine inducible SH2-containing protein 3 (Cish3), mRNA. /PROD=cytokine inducible SH2-containing protein 3 /FL=gb:NM_053565.1 gb:AF075383.1 NM_053565 suppressor of cytokine signaling 3 Socs3 89829 NM_053565 0001558 // regulation of cell growth // traceable author statement /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001932 // regulation of protein phosphorylation // inferred from electronic annotation /// 0001932 // regulation of protein phosphorylation // not recorded /// 0007165 // signal transduction // inferred from direct assay /// 0007165 // signal transduction // traceable author statement /// 0007243 // intracellular protein kinase cascade // inferred from direct assay /// 0007259 // JAK-STAT cascade // inferred from direct assay /// 0007259 // JAK-STAT cascade // traceable author statement /// 0007568 // aging // inferred from expression pattern /// 0009408 // response to heat // inferred from expression pattern /// 0009617 // response to bacterium // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0009968 // negative regulation of signal transduction // not recorded /// 0010332 // response to gamma radiation // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from expression pattern /// 0032094 // response to food // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0040008 // regulation of growth // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045595 // regulation of cell differentiation // not recorded /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // not recorded /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from electronic annotation /// 0046627 // negative regulation of insulin receptor signaling pathway // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0060670 // branching involved in embryonic placenta morphogenesis // inferred from electronic annotation /// 0060670 // branching involved in embryonic placenta morphogenesis // not recorded /// 0060674 // placenta blood vessel development // inferred from electronic annotation /// 0060674 // placenta blood vessel development // not recorded /// 0060707 // trophoblast giant cell differentiation // inferred from electronic annotation /// 0060707 // trophoblast giant cell differentiation // not recorded /// 0060708 // spongiotrophoblast differentiation // inferred from electronic annotation /// 0060708 // spongiotrophoblast differentiation // not recorded 0005737 // cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369585_at NM_022679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022679.1 /DB_XREF=gi:12083620 /GEN=Tore /FEA=FLmRNA /CNT=2 /TID=Rn.48773.1 /TIER=FL /STK=2 /UG=Rn.48773 /LL=64620 /DEF=Rattus norvegicus trispanning orphan (Tore), mRNA. /PROD=trispanning orphan /FL=gb:NM_022679.1 gb:AF108657.1 NM_022679 trispanning orphan Tore 64620 NM_022679 0006810 // transport // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 1369586_at NM_021598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021598.1 /DB_XREF=gi:11068132 /GEN=Mcpt8 /FEA=FLmRNA /CNT=2 /TID=Rn.55163.1 /TIER=FL /STK=2 /UG=Rn.55163 /LL=29269 /DEF=Rattus norvegicus mast cell protease 8 (Mcpt8), mRNA. /PROD=mast cell protease 8 /FL=gb:U67911.1 gb:NM_021598.1 NM_021598 mast cell protease 8 Mcpt8 29269 NM_021598 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1369587_at NM_021689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021689.1 /DB_XREF=gi:11078688 /GEN=Ereg /FEA=FLmRNA /CNT=2 /TID=Rn.42897.1 /TIER=FL /STK=2 /UG=Rn.42897 /LL=59325 /DEF=Rattus norvegicus epiregulin precursor (Ereg), mRNA. /PROD=epiregulin precursor /FL=gb:NM_021689.1 gb:AF074952.1 NM_021689 epiregulin Ereg 59325 NM_021689 0001550 // ovarian cumulus expansion // inferred from direct assay /// 0001556 // oocyte maturation // inferred from direct assay /// 0001819 // positive regulation of cytokine production // not recorded /// 0001819 // positive regulation of cytokine production // inferred from sequence or structural similarity /// 0001819 // positive regulation of cytokine production // inferred from electronic annotation /// 0007143 // female meiosis // inferred from direct assay /// 0007173 // epidermal growth factor receptor signaling pathway // not recorded /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0007267 // cell-cell signaling // inferred from sequence or structural similarity /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009299 // mRNA transcription // not recorded /// 0009299 // mRNA transcription // inferred from sequence or structural similarity /// 0009299 // mRNA transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from sequence or structural similarity /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0030728 // ovulation // inferred from direct assay /// 0042108 // positive regulation of cytokine biosynthetic process // not recorded /// 0042108 // positive regulation of cytokine biosynthetic process // inferred from sequence or structural similarity /// 0042108 // positive regulation of cytokine biosynthetic process // inferred from electronic annotation /// 0042327 // positive regulation of phosphorylation // inferred from direct assay /// 0042327 // positive regulation of phosphorylation // not recorded /// 0042327 // positive regulation of phosphorylation // inferred from sequence or structural similarity /// 0042327 // positive regulation of phosphorylation // inferred from electronic annotation /// 0042700 // luteinizing hormone signaling pathway // inferred from direct assay /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0043616 // keratinocyte proliferation // not recorded /// 0043616 // keratinocyte proliferation // inferred from sequence or structural similarity /// 0043616 // keratinocyte proliferation // inferred from electronic annotation /// 0045089 // positive regulation of innate immune response // not recorded /// 0045089 // positive regulation of innate immune response // inferred from sequence or structural similarity /// 0045089 // positive regulation of innate immune response // inferred from electronic annotation /// 0045410 // positive regulation of interleukin-6 biosynthetic process // not recorded /// 0045410 // positive regulation of interleukin-6 biosynthetic process // inferred from sequence or structural similarity /// 0045410 // positive regulation of interleukin-6 biosynthetic process // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // inferred from direct assay /// 0045740 // positive regulation of DNA replication // not recorded /// 0045740 // positive regulation of DNA replication // inferred from sequence or structural similarity /// 0045741 // positive regulation of epidermal growth factor receptor activity // inferred from direct assay /// 0045766 // positive regulation of angiogenesis // traceable author statement /// 0045840 // positive regulation of mitosis // inferred from direct assay /// 0045840 // positive regulation of mitosis // not recorded /// 0045840 // positive regulation of mitosis // inferred from sequence or structural similarity /// 0045840 // positive regulation of mitosis // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from sequence or structural similarity /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0048146 // positive regulation of fibroblast proliferation // inferred from sequence or structural similarity /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048160 // primary follicle stage // inferred from direct assay /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from direct assay /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0051151 // negative regulation of smooth muscle cell differentiation // not recorded /// 0051151 // negative regulation of smooth muscle cell differentiation // inferred from sequence or structural similarity /// 0051151 // negative regulation of smooth muscle cell differentiation // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation 0005154 // epidermal growth factor receptor binding // not recorded /// 0005154 // epidermal growth factor receptor binding // inferred from sequence or structural similarity /// 0005154 // epidermal growth factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // traceable author statement 1369588_a_at NM_012915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012915.1 /DB_XREF=gi:6978562 /GEN=Atpi /FEA=FLmRNA /CNT=2 /TID=Rn.1658.1 /TIER=FL /STK=2 /UG=Rn.1658 /LL=25392 /DEF=Rattus norvegicus ATPase inhibitor (rat mitochondrial IF1 protein) (Atpi), mRNA. /PROD=ATPase inhibitor (rat mitochondrial IF1protein) /FL=gb:NM_012915.1 gb:L07806.1 NM_012915 ATPase inhibitory factor 1 Atpif1 25392 NM_012915 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0001937 // negative regulation of endothelial cell proliferation // inferred from sequence or structural similarity /// 0045861 // negative regulation of proteolysis // inferred from mutant phenotype /// 0045980 // negative regulation of nucleotide metabolic process // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from sequence or structural similarity /// 0051289 // protein homotetramerization // inferred from sequence or structural similarity /// 0051346 // negative regulation of hydrolase activity // not recorded /// 0051346 // negative regulation of hydrolase activity // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005753 // mitochondrial proton-transporting ATP synthase complex // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from sequence or structural similarity 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from sequence or structural similarity /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0042030 // ATPase inhibitor activity // inferred from direct assay /// 0042030 // ATPase inhibitor activity // not recorded /// 0042030 // ATPase inhibitor activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0043532 // angiostatin binding // not recorded /// 0043532 // angiostatin binding // inferred from sequence or structural similarity /// 0051117 // ATPase binding // not recorded /// 0051117 // ATPase binding // inferred from sequence or structural similarity 1369589_x_at NM_019154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019154.1 /DB_XREF=gi:9506380 /GEN=Amel /FEA=FLmRNA /CNT=2 /TID=Rn.11368.1 /TIER=FL /STK=2 /UG=Rn.11368 /LL=29160 /DEF=Rattus norvegicus amelogenin (Amel), mRNA. /PROD=amelogenin /FL=gb:NM_019154.1 gb:U67130.1 NM_019154 amelogenin X chromosome Amelx 29160 NM_019154 0007155 // cell adhesion // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from expression pattern /// 0008283 // cell proliferation // not recorded /// 0031214 // biomineral tissue development // inferred from electronic annotation /// 0034505 // tooth mineralization // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from expression pattern /// 0070166 // enamel mineralization // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005604 // basement membrane // not recorded /// 0005604 // basement membrane // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0030139 // endocytic vesicle // inferred from expression pattern /// 0031012 // extracellular matrix // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0030345 // structural constituent of tooth enamel // inferred from direct assay /// 0030345 // structural constituent of tooth enamel // not recorded /// 0030345 // structural constituent of tooth enamel // traceable author statement /// 0042802 // identical protein binding // inferred from direct assay /// 0042802 // identical protein binding // not recorded /// 0043498 // cell surface binding // not recorded /// 0046848 // hydroxyapatite binding // not recorded 1369590_a_at NM_024134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024134.1 /DB_XREF=gi:13162307 /GEN=Ddit3 /FEA=FLmRNA /CNT=2 /TID=Rn.11183.1 /TIER=FL /STK=2 /UG=Rn.11183 /LL=29467 /DEF=Rattus norvegicus DNA-damage inducible transcript 3 (Ddit3), mRNA. /PROD=DNA-damage inducible transcript 3 /FL=gb:NM_024134.1 gb:U30186.1 NM_024134 DNA-damage inducible transcript 3 Ddit3 29467 NM_001109986 /// NM_024134 0001975 // response to amphetamine // inferred from expression pattern /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0006983 // ER overload response // inferred from mutant phenotype /// 0006983 // ER overload response // not recorded /// 0006983 // ER overload response // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // not recorded /// 0032792 // negative regulation of CREB transcription factor activity // inferred from direct assay /// 0034976 // response to endoplasmic reticulum stress // not recorded /// 0034976 // response to endoplasmic reticulum stress // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0042789 // mRNA transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0042789 // mRNA transcription from RNA polymerase II promoter // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0045454 // cell redox homeostasis // not recorded /// 0045941 // positive regulation of transcription // inferred from direct assay /// 0048568 // embryonic organ development // inferred from expression pattern /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1369591_at NM_031562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031562.1 /DB_XREF=gi:13928761 /GEN=Csnk /FEA=FLmRNA /CNT=2 /TID=Rn.10746.1 /TIER=FL /STK=2 /UG=Rn.10746 /LL=29188 /DEF=Rattus norvegicus casein kappa (Csnk), mRNA. /PROD=casein kappa /FL=gb:K02598.1 gb:NM_031562.1 NM_031562 casein kappa Csn3 29188 NM_031562 0005576 // extracellular region // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369592_at NM_138975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_138975.1 /DB_XREF=gi:20376817 /GEN=Wbp2 /FEA=FLmRNA /CNT=2 /TID=Affx.1.15 /TIER=FL /STK=2 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus WW domain binding protein 2 (Wbp2), mRNA. /PROD=WW domain binding protein 2 /FL=gb:AF499026.1 gb:NM_138975.1 NM_138975 WW domain binding protein 2 Wbp2 192645 NM_138975 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1369593_at NM_130825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130825.1 /DB_XREF=gi:18677760 /GEN=Cgi-94 /FEA=FLmRNA /CNT=2 /TID=Rn.81234.1 /TIER=FL /STK=2 /UG=Rn.81234 /DEF=Rattus norvegicus CGI-94 protein (Cgi-94), mRNA. /PROD=CGI-94 protein /FL=gb:NM_130825.1 gb:AF350421.1 NM_130825 UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) Utp11l 170669 NM_130825 0006364 // rRNA processing // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0007399 // nervous system development // not recorded /// 0048011 // nerve growth factor receptor signaling pathway // not recorded 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0032040 // small-subunit processome // inferred from electronic annotation 0005515 // protein binding // not recorded 1369594_at NM_053903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053903.1 /DB_XREF=gi:16758777 /GEN=Efna5 /FEA=FLmRNA /CNT=2 /TID=Rn.10714.1 /TIER=FL /STK=2 /UG=Rn.10714 /LL=116683 /DEF=Rattus norvegicus eph-related receptor tyrosine kinase ligand 7 (Efna5), mRNA. /PROD=eph-related receptor tyrosine kinase ligand 7 /FL=gb:U69279.1 gb:NM_053903.1 NM_053903 ephrin A5 Efna5 116683 NM_053903 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0007413 // axonal fasciculation // non-traceable author statement /// 0007417 // central nervous system development // non-traceable author statement /// 0007420 // brain development // inferred from mutant phenotype /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031290 // retinal ganglion cell axon guidance // inferred from electronic annotation /// 0031290 // retinal ganglion cell axon guidance // not recorded /// 0050919 // negative chemotaxis // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0045499 // chemorepellent activity // inferred from electronic annotation /// 0045499 // chemorepellent activity // not recorded /// 0046875 // ephrin receptor binding // inferred from direct assay 1369595_at NM_130754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130754.1 /DB_XREF=gi:18543368 /GEN=Fgf23 /FEA=FLmRNA /CNT=2 /TID=Rn.81229.1 /TIER=FL /STK=2 /UG=Rn.81229 /DEF=Rattus norvegicus fibroblast growth factor 23 (Fgf23), mRNA. /PROD=fibroblast growth factor 23 /FL=gb:AB078777.1 gb:NM_130754.1 NM_130754 fibroblast growth factor 23 Fgf23 170583 NM_130754 0006796 // phosphate metabolic process // inferred from expression pattern /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0010966 // regulation of phosphate transport // inferred from electronic annotation /// 0010966 // regulation of phosphate transport // not recorded /// 0010980 // positive regulation of vitamin D 24-hydroxylase activity // inferred from electronic annotation /// 0010980 // positive regulation of vitamin D 24-hydroxylase activity // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030500 // regulation of bone mineralization // not recorded /// 0030500 // regulation of bone mineralization // inferred from electronic annotation /// 0030502 // negative regulation of bone mineralization // inferred from electronic annotation /// 0030502 // negative regulation of bone mineralization // not recorded /// 0030643 // cellular phosphate ion homeostasis // inferred from electronic annotation /// 0030643 // cellular phosphate ion homeostasis // not recorded /// 0042359 // vitamin D metabolic process // inferred from expression pattern /// 0042369 // vitamin D catabolic process // inferred from electronic annotation /// 0042369 // vitamin D catabolic process // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0045668 // negative regulation of osteoblast differentiation // inferred from electronic annotation /// 0045668 // negative regulation of osteoblast differentiation // not recorded /// 0046888 // negative regulation of hormone secretion // inferred from direct assay /// 0055062 // phosphate ion homeostasis // not recorded /// 0055062 // phosphate ion homeostasis // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded /// 0090080 // positive regulation of MAPKKK cascade by fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0090080 // positive regulation of MAPKKK cascade by fibroblast growth factor receptor signaling pathway // not recorded 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0044421 // extracellular region part // inferred from direct assay 0005104 // fibroblast growth factor receptor binding // not recorded /// 0005104 // fibroblast growth factor receptor binding // traceable author statement /// 0005104 // fibroblast growth factor receptor binding // inferred from electronic annotation /// 0005105 // type 1 fibroblast growth factor receptor binding // inferred from electronic annotation /// 0005105 // type 1 fibroblast growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation 1369596_at NM_053836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053836.1 /DB_XREF=gi:16758691 /GEN=Il2 /FEA=FLmRNA /CNT=2 /TID=Rn.9871.1 /TIER=FL /STK=2 /UG=Rn.9871 /LL=116562 /DEF=Rattus norvegicus interleukin 2 (Il2), mRNA. /PROD=interleukin 2 /FL=gb:M22899.1 gb:NM_053836.1 NM_053836 interleukin 2 Il2 116562 NM_053836 0001933 // negative regulation of protein phosphorylation // inferred from direct assay /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0002903 // negative regulation of B cell apoptosis // inferred from electronic annotation /// 0002903 // negative regulation of B cell apoptosis // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from direct assay /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042104 // positive regulation of activated T cell proliferation // inferred from electronic annotation /// 0042104 // positive regulation of activated T cell proliferation // not recorded /// 0042523 // positive regulation of tyrosine phosphorylation of Stat5 protein // inferred from electronic annotation /// 0042523 // positive regulation of tyrosine phosphorylation of Stat5 protein // not recorded /// 0045582 // positive regulation of T cell differentiation // inferred from direct assay /// 0045591 // positive regulation of regulatory T cell differentiation // inferred from direct assay /// 0045822 // negative regulation of heart contraction // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046013 // regulation of T cell homeostatic proliferation // inferred from electronic annotation /// 0046013 // regulation of T cell homeostatic proliferation // not recorded /// 0048304 // positive regulation of isotype switching to IgG isotypes // inferred from electronic annotation /// 0048304 // positive regulation of isotype switching to IgG isotypes // not recorded /// 0050672 // negative regulation of lymphocyte proliferation // inferred from electronic annotation /// 0050672 // negative regulation of lymphocyte proliferation // not recorded /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // not recorded /// 0051024 // positive regulation of immunoglobulin secretion // inferred from electronic annotation /// 0051024 // positive regulation of immunoglobulin secretion // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from direct assay /// 0005125 // cytokine activity // not recorded /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005134 // interleukin-2 receptor binding // inferred from mutant phenotype /// 0005134 // interleukin-2 receptor binding // not recorded /// 0005134 // interleukin-2 receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from direct assay /// 0031851 // kappa-type opioid receptor binding // inferred from mutant phenotype /// 0043208 // glycosphingolipid binding // inferred from direct assay 1369597_at NM_021847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021847.1 /DB_XREF=gi:11177879 /GEN=Vapb /FEA=FLmRNA /CNT=2 /TID=Rn.44220.1 /TIER=FL /STK=2 /UG=Rn.44220 /LL=60431 /DEF=Rattus norvegicus VAMP-associated protein B (Vapb), mRNA. /PROD=VAMP-associated protein B /FL=gb:AF086631.1 gb:NM_021847.1 NM_021847 VAMP (vesicle-associated membrane protein)-associated protein B and C Vapb 60431 NM_021847 0019048 // virus-host interaction // not recorded /// 0019048 // virus-host interaction // inferred from sequence or structural similarity /// 0019048 // virus-host interaction // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // not recorded /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from sequence or structural similarity /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0045070 // positive regulation of viral genome replication // not recorded /// 0045070 // positive regulation of viral genome replication // inferred from sequence or structural similarity /// 0045070 // positive regulation of viral genome replication // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from sequence or structural similarity /// 0019899 // enzyme binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0048487 // beta-tubulin binding // not recorded /// 0048487 // beta-tubulin binding // inferred from sequence or structural similarity /// 0048487 // beta-tubulin binding // inferred from electronic annotation 1369598_at NM_019139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019139.1 /DB_XREF=gi:9506720 /GEN=Gdnf /FEA=FLmRNA /CNT=2 /TID=Rn.53970.1 /TIER=FL /STK=2 /UG=Rn.53970 /LL=25453 /DEF=Rattus norvegicus Glial cell line derived neutrophic factor (Gdnf), mRNA. /PROD=glial cell line derived neutrophic factor /FL=gb:L15305.1 gb:NM_019139.1 NM_019139 glial cell derived neurotrophic factor Gdnf 25453 NM_019139 0001656 // metanephros development // not recorded /// 0001657 // ureteric bud development // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001755 // neural crest cell migration // not recorded /// 0001759 // organ induction // not recorded /// 0001941 // postsynaptic membrane organization // not recorded /// 0003337 // mesenchymal to epithelial transition involved in metanephros morphogenesis // not recorded /// 0003337 // mesenchymal to epithelial transition involved in metanephros morphogenesis // inferred from direct assay /// 0006916 // anti-apoptosis // not recorded /// 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // traceable author statement /// 0007422 // peripheral nervous system development // not recorded /// 0008283 // cell proliferation // inferred from direct assay /// 0009611 // response to wounding // inferred from direct assay /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0021784 // postganglionic parasympathetic nervous system development // not recorded /// 0030182 // neuron differentiation // inferred from direct assay /// 0030432 // peristalsis // not recorded /// 0030901 // midbrain development // inferred from expression pattern /// 0031175 // neuron projection development // not recorded /// 0032770 // positive regulation of monooxygenase activity // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from sequence or structural similarity /// 0048255 // mRNA stabilization // not recorded /// 0048484 // enteric nervous system development // not recorded /// 0048485 // sympathetic nervous system development // not recorded /// 0051584 // regulation of dopamine uptake // not recorded /// 0051584 // regulation of dopamine uptake // inferred from sequence or structural similarity /// 0060041 // retina development in camera-type eye // inferred from expression pattern /// 0060676 // ureteric bud formation // not recorded /// 0060688 // regulation of morphogenesis of a branching structure // not recorded /// 0071549 // cellular response to dexamethasone stimulus // inferred from direct assay /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // not recorded /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from direct assay /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from mutant phenotype 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from direct assay 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // inferred from electronic annotation /// 0030116 // glial cell line-derived neurotrophic factor receptor binding // traceable author statement /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity 1369599_at NM_022633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022633.1 /DB_XREF=gi:12018327 /GEN=AF188491 /FEA=FLmRNA /CNT=2 /TID=Rn.48754.1 /TIER=FL /STK=2 /UG=Rn.48754 /LL=64568 /DEF=Rattus norvegicus galanin-like peptide precursor (AF188491), mRNA. /PROD=galanin-like peptide precursor /FL=gb:AF188491.1 gb:NM_022633.1 NM_022633 galanin-like peptide Galp 64568 NM_022633 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0032868 // response to insulin stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation 1369600_at NM_130816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130816.1 /DB_XREF=gi:18677742 /GEN=Fgf11 /FEA=FLmRNA /CNT=2 /TID=Rn.81235.1 /TIER=FL /STK=2 /UG=Rn.81235 /DEF=Rattus norvegicus fibroblast growth factor 11 (Fgf11), mRNA. /PROD=fibroblast growth factor 11 /FL=gb:AB079263.1 gb:NM_130816.1 NM_130816 fibroblast growth factor 11 Fgf11 170632 NM_130816 0008083 // growth factor activity // inferred from electronic annotation 1369601_at NM_021683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021683.1 /DB_XREF=gi:11067410 /GEN=Nyw1 /FEA=FLmRNA /CNT=2 /TID=Rn.42886.1 /TIER=FL /STK=2 /UG=Rn.42886 /LL=59319 /DEF=Rattus norvegicus ischemia related factor NYW-1 (Nyw1), mRNA. /PROD=ischemia related factor NYW-1 /FL=gb:AB027149.1 gb:NM_021683.1 NM_021683 ischemia related factor NYW-1 Nyw1 59319 NM_001134341 0006914 // autophagy // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0021915 // neural tube development // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1369602_at NM_019198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019198.1 /DB_XREF=gi:9506592 /GEN=Fgf17 /FEA=FLmRNA /CNT=2 /TID=Rn.44353.1 /TIER=FL /STK=2 /UG=Rn.44353 /LL=29368 /DEF=Rattus norvegicus fibroblast growth factor 17 (Fgf17), mRNA. /PROD=fibroblast growth factor 17 /FL=gb:AB008682.1 gb:NM_019198.1 NM_019198 fibroblast growth factor 17 Fgf17 29368 NM_019198 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded 0005105 // type 1 fibroblast growth factor receptor binding // inferred from electronic annotation /// 0005105 // type 1 fibroblast growth factor receptor binding // not recorded /// 0005111 // type 2 fibroblast growth factor receptor binding // inferred from electronic annotation /// 0005111 // type 2 fibroblast growth factor receptor binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation 1369603_at NM_022929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022929.1 /DB_XREF=gi:12621085 /GEN=Kcnip1 /FEA=FLmRNA /CNT=2 /TID=Rn.54458.1 /TIER=FL /STK=2 /UG=Rn.54458 /LL=65023 /DEF=Rattus norvegicus potassium channel interacting protein 1 (Kcnip1), mRNA. /PROD=potassium channel interacting protein 1 /FL=gb:NM_022929.1 gb:AB046443.1 NM_022929 Kv channel-interacting protein 1 Kcnip1 65023 NM_022929 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0045760 // positive regulation of action potential // inferred from direct assay 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0015459 // potassium channel regulator activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from physical interaction 1369604_at NM_012951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012951.1 /DB_XREF=gi:6978836 /GEN=Fgf10 /FEA=FLmRNA /CNT=2 /TID=Rn.44439.1 /TIER=FL /STK=2 /UG=Rn.44439 /LL=25443 /DEF=Rattus norvegicus Fibroblast growth factor 10 (Fgf10), mRNA. /PROD=fibroblast growth factor 10 /FL=gb:D79215.1 gb:NM_012951.1 NM_012951 fibroblast growth factor 10 Fgf10 25443 NM_012951 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0001525 // angiogenesis // inferred from expression pattern /// 0001656 // metanephros development // inferred from electronic annotation /// 0001656 // metanephros development // not recorded /// 0001759 // organ induction // inferred from direct assay /// 0001759 // organ induction // not recorded /// 0001759 // organ induction // inferred from electronic annotation /// 0001823 // mesonephros development // inferred from electronic annotation /// 0001823 // mesonephros development // not recorded /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0001974 // blood vessel remodeling // not recorded /// 0003338 // metanephros morphogenesis // not recorded /// 0006935 // chemotaxis // not recorded /// 0006935 // chemotaxis // inferred from electronic annotation /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // not recorded /// 0007431 // salivary gland development // not recorded /// 0007431 // salivary gland development // inferred from electronic annotation /// 0007435 // salivary gland morphogenesis // not recorded /// 0007435 // salivary gland morphogenesis // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0008544 // epidermis development // not recorded /// 0008544 // epidermis development // inferred from electronic annotation /// 0008589 // regulation of smoothened signaling pathway // inferred from electronic annotation /// 0008589 // regulation of smoothened signaling pathway // not recorded /// 0009880 // embryonic pattern specification // inferred from electronic annotation /// 0009880 // embryonic pattern specification // not recorded /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010631 // epithelial cell migration // not recorded /// 0010631 // epithelial cell migration // inferred from electronic annotation /// 0010634 // positive regulation of epithelial cell migration // inferred from electronic annotation /// 0010634 // positive regulation of epithelial cell migration // not recorded /// 0010838 // positive regulation of keratinocyte proliferation // inferred from electronic annotation /// 0010838 // positive regulation of keratinocyte proliferation // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0021983 // pituitary gland development // not recorded /// 0030154 // cell differentiation // inferred from expression pattern /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0030177 // positive regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030538 // embryonic genitalia morphogenesis // inferred from electronic annotation /// 0030538 // embryonic genitalia morphogenesis // not recorded /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0030878 // thyroid gland development // not recorded /// 0030916 // otic vesicle formation // inferred from electronic annotation /// 0030916 // otic vesicle formation // not recorded /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0031016 // pancreas development // inferred from electronic annotation /// 0031016 // pancreas development // not recorded /// 0031069 // hair follicle morphogenesis // not recorded /// 0031076 // embryonic camera-type eye development // inferred from electronic annotation /// 0031076 // embryonic camera-type eye development // not recorded /// 0031532 // actin cytoskeleton reorganization // inferred from electronic annotation /// 0031532 // actin cytoskeleton reorganization // not recorded /// 0031659 // positive regulation of cyclin-dependent protein kinase activity involved in G1/S // inferred from electronic annotation /// 0031659 // positive regulation of cyclin-dependent protein kinase activity involved in G1/S // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032781 // positive regulation of ATPase activity // inferred from electronic annotation /// 0032781 // positive regulation of ATPase activity // not recorded /// 0032808 // lacrimal gland development // inferred from electronic annotation /// 0032808 // lacrimal gland development // not recorded /// 0032925 // regulation of activin receptor signaling pathway // inferred from electronic annotation /// 0032925 // regulation of activin receptor signaling pathway // not recorded /// 0034394 // protein localization at cell surface // inferred from electronic annotation /// 0034394 // protein localization at cell surface // not recorded /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0035019 // somatic stem cell maintenance // not recorded /// 0035108 // limb morphogenesis // not recorded /// 0035108 // limb morphogenesis // inferred from electronic annotation /// 0035265 // organ growth // inferred from electronic annotation /// 0035265 // organ growth // not recorded /// 0042060 // wound healing // not recorded /// 0042060 // wound healing // inferred from electronic annotation /// 0042246 // tissue regeneration // inferred from expression pattern /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042693 // muscle cell fate commitment // inferred from electronic annotation /// 0042693 // muscle cell fate commitment // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043616 // keratinocyte proliferation // not recorded /// 0043616 // keratinocyte proliferation // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045739 // positive regulation of DNA repair // inferred from electronic annotation /// 0045739 // positive regulation of DNA repair // not recorded /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // not recorded /// 0045747 // positive regulation of Notch signaling pathway // inferred from electronic annotation /// 0045747 // positive regulation of Notch signaling pathway // not recorded /// 0045931 // positive regulation of mitotic cell cycle // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0046877 // regulation of saliva secretion // inferred from electronic annotation /// 0046877 // regulation of saliva secretion // not recorded /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0048286 // lung alveolus development // not recorded /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // not recorded /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048536 // spleen development // inferred from electronic annotation /// 0048536 // spleen development // not recorded /// 0048538 // thymus development // inferred from electronic annotation /// 0048538 // thymus development // not recorded /// 0048557 // embryonic digestive tract morphogenesis // inferred from electronic annotation /// 0048557 // embryonic digestive tract morphogenesis // not recorded /// 0048565 // digestive tract development // not recorded /// 0048565 // digestive tract development // inferred from electronic annotation /// 0048566 // embryonic digestive tract development // not recorded /// 0048566 // embryonic digestive tract development // inferred from electronic annotation /// 0048645 // organ formation // not recorded /// 0048730 // epidermis morphogenesis // inferred from electronic annotation /// 0048730 // epidermis morphogenesis // not recorded /// 0048752 // semicircular canal morphogenesis // not recorded /// 0048754 // branching morphogenesis of a tube // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048807 // female genitalia morphogenesis // inferred from electronic annotation /// 0048807 // female genitalia morphogenesis // not recorded /// 0048808 // male genitalia morphogenesis // inferred from electronic annotation /// 0048808 // male genitalia morphogenesis // not recorded /// 0050671 // positive regulation of lymphocyte proliferation // inferred from electronic annotation /// 0050671 // positive regulation of lymphocyte proliferation // not recorded /// 0050673 // epithelial cell proliferation // not recorded /// 0050673 // epithelial cell proliferation // inferred from electronic annotation /// 0050674 // urothelial cell proliferation // not recorded /// 0050674 // urothelial cell proliferation // inferred from electronic annotation /// 0050677 // positive regulation of urothelial cell proliferation // not recorded /// 0050677 // positive regulation of urothelial cell proliferation // inferred from sequence or structural similarity /// 0050677 // positive regulation of urothelial cell proliferation // inferred from electronic annotation /// 0050678 // regulation of epithelial cell proliferation // not recorded /// 0050678 // regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050872 // white fat cell differentiation // inferred from electronic annotation /// 0050872 // white fat cell differentiation // not recorded /// 0050918 // positive chemotaxis // not recorded /// 0050918 // positive chemotaxis // inferred from electronic annotation /// 0050930 // induction of positive chemotaxis // inferred from electronic annotation /// 0050930 // induction of positive chemotaxis // not recorded /// 0051145 // smooth muscle cell differentiation // inferred from electronic annotation /// 0051145 // smooth muscle cell differentiation // not recorded /// 0051549 // positive regulation of keratinocyte migration // inferred from electronic annotation /// 0051549 // positive regulation of keratinocyte migration // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded /// 0060019 // radial glial cell differentiation // inferred from electronic annotation /// 0060019 // radial glial cell differentiation // not recorded /// 0060173 // limb development // not recorded /// 0060173 // limb development // inferred from electronic annotation /// 0060174 // limb bud formation // inferred from electronic annotation /// 0060174 // limb bud formation // not recorded /// 0060425 // lung morphogenesis // not recorded /// 0060425 // lung morphogenesis // inferred from electronic annotation /// 0060428 // lung epithelium development // inferred from electronic annotation /// 0060428 // lung epithelium development // not recorded /// 0060430 // lung saccule development // inferred from electronic annotation /// 0060430 // lung saccule development // not recorded /// 0060436 // bronchiole morphogenesis // inferred from electronic annotation /// 0060436 // bronchiole morphogenesis // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // not recorded /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060447 // bud outgrowth involved in lung branching // inferred from electronic annotation /// 0060447 // bud outgrowth involved in lung branching // not recorded /// 0060496 // mesenchymal-epithelial cell signaling involved in lung development // inferred from electronic annotation /// 0060496 // mesenchymal-epithelial cell signaling involved in lung development // not recorded /// 0060510 // Type II pneumocyte differentiation // inferred from electronic annotation /// 0060510 // Type II pneumocyte differentiation // not recorded /// 0060541 // respiratory system development // not recorded /// 0060541 // respiratory system development // inferred from electronic annotation /// 0060594 // mammary gland specification // not recorded /// 0060594 // mammary gland specification // inferred from electronic annotation /// 0060595 // fibroblast growth factor receptor signaling pathway involved in mammary gland specification // inferred from electronic annotation /// 0060595 // fibroblast growth factor receptor signaling pathway involved in mammary gland specification // not recorded /// 0060615 // mammary gland bud formation // inferred from electronic annotation /// 0060615 // mammary gland bud formation // not recorded /// 0060661 // submandibular salivary gland formation // not recorded /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // not recorded /// 0060665 // regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling // inferred from electronic annotation /// 0060665 // regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling // not recorded /// 0060667 // branch elongation involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060667 // branch elongation involved in salivary gland morphogenesis // not recorded /// 0060685 // regulation of prostatic bud formation // inferred from electronic annotation /// 0060685 // regulation of prostatic bud formation // not recorded /// 0060879 // semicircular canal fusion // inferred from electronic annotation /// 0060879 // semicircular canal fusion // not recorded /// 0060915 // mesenchymal cell differentiation involved in lung development // inferred from electronic annotation /// 0060915 // mesenchymal cell differentiation involved in lung development // not recorded /// 0061033 // secretion by lung epithelial cell involved in lung growth // inferred from electronic annotation /// 0061033 // secretion by lung epithelial cell involved in lung growth // not recorded /// 0061115 // lung proximal/distal axis specification // inferred from electronic annotation /// 0061115 // lung proximal/distal axis specification // not recorded /// 0070075 // tear secretion // inferred from electronic annotation /// 0070075 // tear secretion // not recorded /// 0070352 // positive regulation of white fat cell proliferation // inferred from electronic annotation /// 0070352 // positive regulation of white fat cell proliferation // not recorded /// 0070371 // ERK1 and ERK2 cascade // not recorded /// 0070371 // ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded /// 0070384 // Harderian gland development // inferred from electronic annotation /// 0070384 // Harderian gland development // not recorded /// 0071157 // negative regulation of cell cycle arrest // inferred from electronic annotation /// 0071157 // negative regulation of cell cycle arrest // not recorded /// 0071338 // positive regulation of hair follicle cell proliferation // inferred from electronic annotation /// 0071338 // positive regulation of hair follicle cell proliferation // not recorded /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0005104 // fibroblast growth factor receptor binding // not recorded /// 0005104 // fibroblast growth factor receptor binding // inferred from sequence or structural similarity /// 0005104 // fibroblast growth factor receptor binding // traceable author statement /// 0005104 // fibroblast growth factor receptor binding // inferred from electronic annotation /// 0005111 // type 2 fibroblast growth factor receptor binding // inferred from electronic annotation /// 0005111 // type 2 fibroblast growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0008201 // heparin binding // not recorded /// 0008201 // heparin binding // inferred from sequence or structural similarity /// 0008201 // heparin binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0042056 // chemoattractant activity // inferred from electronic annotation /// 0042056 // chemoattractant activity // not recorded 1369605_at NM_019236 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019236.1 /DB_XREF=gi:9506774 /GEN=Hes2 /FEA=FLmRNA /CNT=2 /TID=Rn.44655.1 /TIER=FL /STK=2 /UG=Rn.44655 /LL=29567 /DEF=Rattus norvegicus hairy and enhancer of split 2 (Drosophila) (Hes2), mRNA. /PROD=hairy and enhancer of split 2 (Drosophila) /FL=gb:NM_019236.1 gb:D14029.1 NM_019236 hairy and enhancer of split 2 (Drosophila) Hes2 29567 NM_019236 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016481 // negative regulation of transcription // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation 1369606_at NM_023961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023961.1 /DB_XREF=gi:13027407 /GEN=Fgf20 /FEA=FLmRNA /CNT=2 /TID=Rn.64492.1 /TIER=FL /STK=2 /UG=Rn.64492 /LL=66017 /DEF=Rattus norvegicus fibroblast growth factor 20 (Fgf20), mRNA. /PROD=fibroblast growth factor 20 /FL=gb:AB020021.1 gb:NM_023961.1 NM_023961 fibroblast growth factor 20 Fgf20 66017 NM_023961 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from direct assay /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0016049 // cell growth // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0060113 // inner ear receptor cell differentiation // inferred from electronic annotation /// 0060113 // inner ear receptor cell differentiation // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded 0005104 // fibroblast growth factor receptor binding // inferred from genetic interaction /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // inferred from electronic annotation 1369607_at NM_131908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_131908.1 /DB_XREF=gi:18777758 /GEN=Fgf6 /FEA=FLmRNA /CNT=2 /TID=Rn.81222.1 /TIER=FL /STK=2 /UG=Rn.81222 /DEF=Rattus norvegicus fibroblast growth factor 6 (Fgf6), mRNA. /PROD=fibroblast growth factor 6 /FL=gb:NM_131908.1 gb:AB079674.1 NM_131908 fibroblast growth factor 6 Fgf6 170700 NM_131908 0001502 // cartilage condensation // inferred from electronic annotation /// 0001502 // cartilage condensation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0045445 // myoblast differentiation // inferred from electronic annotation /// 0045445 // myoblast differentiation // not recorded 0005576 // extracellular region // not recorded /// 0042383 // sarcolemma // inferred from direct assay 0008083 // growth factor activity // inferred from expression pattern /// 0008083 // growth factor activity // inferred from electronic annotation 1369608_at NM_021867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021867.1 /DB_XREF=gi:11177915 /GEN=Fgf16 /FEA=FLmRNA /CNT=2 /TID=Rn.44348.1 /TIER=FL /STK=2 /UG=Rn.44348 /LL=60464 /DEF=Rattus norvegicus Fibroblast growth factor 16 (Fgf16), mRNA. /PROD=Fibroblast growth factor 16 /FL=gb:AB002561.1 gb:NM_021867.1 NM_021867 fibroblast growth factor 16 Fgf16 60464 NM_021867 0008543 // fibroblast growth factor receptor signaling pathway // inferred from genetic interaction /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0070349 // positive regulation of brown fat cell proliferation // inferred from genetic interaction 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded 0005104 // fibroblast growth factor receptor binding // inferred from genetic interaction /// 0008083 // growth factor activity // inferred from electronic annotation 1369609_at NM_053457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053457.1 /DB_XREF=gi:16758197 /GEN=Cldn11 /FEA=FLmRNA /CNT=2 /TID=Rn.64640.1 /TIER=FL /STK=2 /UG=Rn.64640 /LL=84588 /DEF=Rattus norvegicus claudin-11 (Cldn11), mRNA. /PROD=claudin-11 /FL=gb:AF324043.1 gb:NM_053457.1 NM_053457 claudin 11 Cldn11 84588 NM_053457 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0008366 // axon ensheathment // inferred from electronic annotation /// 0008366 // axon ensheathment // not recorded /// 0016338 // calcium-independent cell-cell adhesion // inferred from sequence or structural similarity 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // not recorded /// 0005923 // tight junction // inferred from sequence or structural similarity /// 0005923 // tight junction // traceable author statement /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from sequence or structural similarity 1369610_at NM_021851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021851.1 /DB_XREF=gi:11177887 /GEN=Lin7c /FEA=FLmRNA /CNT=2 /TID=Rn.44269.1 /TIER=FL /STK=2 /UG=Rn.44269 /LL=60442 /DEF=Rattus norvegicus lin-7-C (Lin7c), mRNA. /PROD=lin-7-C /FL=gb:NM_021851.1 gb:AF090136.1 NM_021851 lin-7 homolog C (C. elegans) Lin7c 60442 NM_021851 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // not recorded /// 0015031 // protein transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from direct assay /// 0005923 // tight junction // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030165 // PDZ domain binding // inferred from physical interaction 1369611_at NM_021850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021850.1 /DB_XREF=gi:11177885 /GEN=Bcl2l2 /FEA=FLmRNA /CNT=2 /TID=Rn.44267.1 /TIER=FL /STK=2 /UG=Rn.44267 /LL=60434 /DEF=Rattus norvegicus Bcl-w protein (Bcl2l2), mRNA. /PROD=Bcl-w protein /FL=gb:NM_021850.1 gb:AF096291.1 NM_021850 Bcl2-like 2 Bcl2l2 60434 NM_021850 0006915 // apoptosis // inferred from mutant phenotype /// 0006915 // apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0060011 // Sertoli cell proliferation // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0031966 // mitochondrial membrane // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0051400 // BH domain binding // inferred from physical interaction 1369612_at NM_022203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022203.1 /DB_XREF=gi:11559973 /GEN=LOC60591 /FEA=FLmRNA /CNT=2 /TID=Rn.44426.1 /TIER=FL /STK=2 /UG=Rn.44426 /LL=60591 /DEF=Rattus norvegicus calcium-activated potassium channel beta subunit (LOC60591), mRNA. /PROD=calcium-activated potassium channel betasubunit /FL=gb:U79661.1 gb:NM_022203.1 NM_022203 calcium-activated potassium channel beta subunit LOC60591 60591 NM_022203 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from direct assay 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0015269 // calcium-activated potassium channel activity // inferred from electronic annotation /// 0015269 // calcium-activated potassium channel activity // traceable author statement /// 0015459 // potassium channel regulator activity // inferred from direct assay 1369613_at NM_022682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022682.1 /DB_XREF=gi:12083626 /GEN=Jwa /FEA=FLmRNA /CNT=2 /TID=Rn.48795.1 /TIER=FL /STK=2 /UG=Rn.48795 /LL=64623 /DEF=Rattus norvegicus vitamin A responsive; cytoskeleton related (Jwa), mRNA. /PROD=vitamin A responsive; cytoskeleton related /FL=gb:AF242391.1 gb:NM_022682.1 NM_022682 0015813 // L-glutamate transport // inferred from electronic annotation /// 0051051 // negative regulation of transport // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from direct assay 1369614_at NM_133410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133410.1 /DB_XREF=gi:19173773 /GEN=Rap2b /FEA=FLmRNA /CNT=2 /TID=Rn.81035.1 /TIER=FL /STK=2 /UG=Rn.81035 /DEF=Rattus norvegicus RAP2B, member of RAS oncogene family (Rap2b), mRNA. /PROD=RAP2B, member of RAS oncogene family /FL=gb:NM_133410.1 gb:AF386786.1 NM_133410 RAP2B, member of RAS oncogene family Rap2b 170923 NM_133410 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // not recorded /// 0031954 // positive regulation of protein autophosphorylation // not recorded /// 0032486 // Rap protein signal transduction // inferred from sequence or structural similarity /// 0061097 // regulation of protein tyrosine kinase activity // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0055037 // recycling endosome // not recorded /// 0055038 // recycling endosome membrane // inferred from sequence or structural similarity /// 0055038 // recycling endosome membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded 1369615_at NM_053741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053741.1 /DB_XREF=gi:16758565 /GEN=Rap2a /FEA=FLmRNA /CNT=2 /TID=Rn.11606.1 /TIER=FL /STK=2 /UG=Rn.11606 /LL=114560 /DEF=Rattus norvegicus rap2A-like protein (Rap2a), mRNA. /PROD=rap2A-like protein /FL=gb:NM_053741.1 gb:AY037826.1 NM_053741 RAS related protein 2a Rap2a 114560 NM_053741 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // not recorded /// 0031954 // positive regulation of protein autophosphorylation // not recorded /// 0045184 // establishment of protein localization // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0055037 // recycling endosome // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1369616_at NM_130751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130751.1 /DB_XREF=gi:18543362 /GEN=Fgf22 /FEA=FLmRNA /CNT=2 /TID=Rn.81232.1 /TIER=FL /STK=2 /UG=Rn.81232 /DEF=Rattus norvegicus fibroblast growth factor 22 (Fgf22), mRNA. /PROD=fibroblast growth factor 22 /FL=gb:NM_130751.1 gb:AB078902.1 NM_130751 fibroblast growth factor 22 Fgf22 170579 NM_130751 0008543 // fibroblast growth factor receptor signaling pathway // not recorded 0005576 // extracellular region // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation 1369617_at NM_053928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053928.1 /DB_XREF=gi:16758809 /GEN=Ube2n /FEA=FLmRNA /CNT=2 /TID=Rn.64625.1 /TIER=FL /STK=2 /UG=Rn.64625 /LL=116725 /DEF=Rattus norvegicus ubiquitin-conjugating enzyme E2N (homologous to yeast UBC13) (Ube2n), mRNA. /PROD=ubiquitin-conjugating enzyme E2N (homologous toyeast UBC13) /FL=gb:AB032739.1 gb:NM_053928.1 NM_053928 ubiquitin-conjugating enzyme E2N (UBC13 homolog, yeast) Ube2n 116725 NM_053928 0000724 // double-strand break repair via homologous recombination // not recorded /// 0000729 // DNA double-strand break processing // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006301 // postreplication repair // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // traceable author statement /// 0016574 // histone ubiquitination // not recorded /// 0031058 // positive regulation of histone modification // not recorded /// 0033182 // regulation of histone ubiquitination // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0045739 // positive regulation of DNA repair // not recorded /// 0050852 // T cell receptor signaling pathway // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051443 // positive regulation of ubiquitin-protein ligase activity // not recorded /// 0070534 // protein K63-linked ubiquitination // not recorded /// 0070534 // protein K63-linked ubiquitination // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0031372 // UBC13-MMS2 complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from mutant phenotype /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation /// 0043130 // ubiquitin binding // not recorded 1369618_at NM_053828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053828.1 /DB_XREF=gi:16758679 /GEN=Il13 /FEA=FLmRNA /CNT=2 /TID=Rn.9921.1 /TIER=FL /STK=2 /UG=Rn.9921 /LL=116553 /DEF=Rattus norvegicus interleukin 13 (Il13), mRNA. /PROD=interleukin 13 /FL=gb:NM_053828.1 gb:L26913.1 NM_053828 interleukin 13 Il13 116553 NM_053828 0002639 // positive regulation of immunoglobulin production // inferred from direct assay /// 0006955 // immune response // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0010155 // regulation of proton transport // inferred from direct assay /// 0030890 // positive regulation of B cell proliferation // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0035094 // response to nicotine // inferred from direct assay /// 0043270 // positive regulation of ion transport // inferred from direct assay /// 0050714 // positive regulation of protein secretion // inferred from direct assay /// 0071635 // negative regulation of transforming growth factor-beta production // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005126 // cytokine receptor binding // inferred from electronic annotation /// 0005144 // interleukin-13 receptor binding // inferred from physical interaction /// 0005144 // interleukin-13 receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369619_at NM_133385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133385.1 /DB_XREF=gi:19173737 /GEN=Ucn3 /FEA=FLmRNA /CNT=2 /TID=Rn.81020.1 /TIER=FL /STK=2 /UG=Rn.81020 /DEF=Rattus norvegicus urocortin 3 (Ucn3), mRNA. /PROD=urocortin 3 /FL=gb:AY044835.1 gb:NM_133385.1 NM_133385 urocortin 2 Ucn2 170896 NM_133385 0006171 // cAMP biosynthetic process // inferred from electronic annotation /// 0006171 // cAMP biosynthetic process // not recorded /// 0006171 // cAMP biosynthetic process // inferred from sequence or structural similarity /// 0006950 // response to stress // inferred from expression pattern /// 0008283 // cell proliferation // inferred from direct assay /// 0032277 // negative regulation of gonadotropin secretion // inferred from mutant phenotype /// 0042246 // tissue regeneration // traceable author statement /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay 0001664 // G-protein-coupled receptor binding // inferred from electronic annotation /// 0001664 // G-protein-coupled receptor binding // not recorded /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // inferred from sequence or structural similarity /// 0005179 // hormone activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042562 // hormone binding // inferred from electronic annotation /// 0042562 // hormone binding // not recorded 1369620_at NM_022192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022192.1 /DB_XREF=gi:11559959 /GEN=Pkci /FEA=FLmRNA /CNT=2 /TID=Rn.44370.1 /TIER=FL /STK=2 /UG=Rn.44370 /LL=60580 /DEF=Rattus norvegicus putative protein kinase C inhibitor (Pkci), mRNA. /PROD=putative protein kinase C inhibitor /FL=gb:U09407.1 gb:NM_022192.1 NM_022192 histidine triad nucleotide binding protein 1 Hint1 690660 NM_001109607 0006886 // intracellular protein transport // traceable author statement /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from mutant phenotype /// 0006900 // membrane budding // traceable author statement 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030134 // ER to Golgi transport vesicle // inferred from mutant phenotype 0003824 // catalytic activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1369621_s_at NM_053308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053308.1 /DB_XREF=gi:17985952 /GEN=Fkbp2 /FEA=FLmRNA /CNT=2 /TID=Rn.80829.1 /TIER=FL /STK=2 /UG=Rn.80829 /LL=29453 /DEF=Rattus norvegicus FK506 binding protein 2 (13 kDa) (Fkbp2), mRNA. /PROD=FK506 binding protein 2 (13 kDa) /FL=gb:U69485.1 gb:NM_053308.1 NM_053308 FK506 binding protein 1a Fkbp1a 25639 NM_013102 0001933 // negative regulation of protein phosphorylation // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0006457 // protein folding // inferred from electronic annotation /// 0006936 // muscle contraction // not recorded /// 0007183 // SMAD protein complex assembly // not recorded /// 0010039 // response to iron ion // inferred from expression pattern /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0031000 // response to caffeine // not recorded /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0032092 // positive regulation of protein binding // not recorded /// 0032513 // negative regulation of protein phosphatase type 2B activity // not recorded /// 0032925 // regulation of activin receptor signaling pathway // not recorded /// 0034205 // beta-amyloid formation // not recorded /// 0042098 // T cell proliferation // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043206 // fibril organization // not recorded /// 0050776 // regulation of immune response // not recorded /// 0051209 // release of sequestered calcium ion into cytosol // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0060314 // regulation of ryanodine-sensitive calcium-release channel activity // not recorded /// 0060347 // heart trabecula formation // not recorded 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0033017 // sarcoplasmic reticulum membrane // not recorded /// 0043679 // axon terminus // inferred from direct assay 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // not recorded /// 0004871 // signal transducer activity // not recorded /// 0005160 // transforming growth factor beta receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005528 // FK506 binding // inferred from direct assay /// 0005528 // FK506 binding // not recorded /// 0008144 // drug binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation /// 0034713 // type I transforming growth factor beta receptor binding // inferred from direct assay /// 0046332 // SMAD binding // not recorded /// 0048185 // activin binding // not recorded 1369622_at NM_138852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_138852.1 /DB_XREF=gi:20301997 /GEN=Bv8 /FEA=FLmRNA /CNT=2 /TID=Affx.1.16 /TIER=FL /STK=2 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus homolog of mouse Bv8 (Bombina variegata 8 kDa); prokineticin 2 precursor (Bv8), mRNA. /PROD=homolog of mouse Bv8 (Bombina variegata 8 kDa);prokineticin 2 precursor /FL=gb:NM_138852.1 gb:AY089984.1 NM_138852 prokineticin 2 Prok2 192206 NM_001037541 /// NM_138852 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006935 // chemotaxis // not recorded /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0007623 // circadian rhythm // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0045987 // positive regulation of smooth muscle contraction // inferred from electronic annotation /// 0045987 // positive regulation of smooth muscle contraction // not recorded /// 0048511 // rhythmic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded 0001664 // G-protein-coupled receptor binding // inferred from direct assay 1369623_at NM_022613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022613.1 /DB_XREF=gi:12018289 /GEN=AF145796 /FEA=FLmRNA /CNT=2 /TID=Rn.48695.1 /TIER=FL /STK=2 /UG=Rn.48695 /LL=64548 /DEF=Rattus norvegicus morphine related protein-1 (AF145796), mRNA. /PROD=morphine related protein-1 /FL=gb:NM_022613.1 gb:AF145796.1 NM_022613 1369624_at NM_022222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022222.1 /DB_XREF=gi:11560009 /GEN=LOC63850 /FEA=FLmRNA /CNT=2 /TID=Rn.44475.1 /TIER=FL /STK=2 /UG=Rn.44475 /LL=63850 /DEF=Rattus norvegicus preproprolactin-releasing peptide (LOC63850), mRNA. /PROD=preproprolactin-releasing peptide /FL=gb:NM_022222.1 gb:AB015418.1 NM_022222 prolactin releasing hormone Prlh 63850 NM_022222 0001894 // tissue homeostasis // not recorded /// 0002021 // response to dietary excess // not recorded /// 0002023 // reduction of food intake in response to dietary excess // inferred from mutant phenotype /// 0006112 // energy reserve metabolic process // not recorded /// 0006629 // lipid metabolic process // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007631 // feeding behavior // inferred from mutant phenotype /// 0009749 // response to glucose stimulus // not recorded /// 0032868 // response to insulin stimulus // not recorded /// 0040014 // regulation of multicellular organism growth // not recorded /// 0042755 // eating behavior // not recorded /// 0043434 // response to peptide hormone stimulus // not recorded /// 0045444 // fat cell differentiation // not recorded /// 0048483 // autonomic nervous system development // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0005148 // prolactin receptor binding // traceable author statement /// 0005179 // hormone activity // traceable author statement /// 0005179 // hormone activity // inferred from electronic annotation /// 0005184 // neuropeptide hormone activity // inferred from mutant phenotype /// 0031861 // prolactin-releasing peptide receptor binding // inferred from mutant phenotype 1369625_at AA891661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891661 /DB_XREF=gi:3018540 /DB_XREF=EST195464 /CLONE=RKIAF23 /FEA=FLmRNA /CNT=40 /TID=Rn.1618.1 /TIER=Stack /STK=6 /UG=Rn.1618 /LL=25240 /UG_GENE=Aqp1 /UG_TITLE=Aquaporin 1 (aquaporin channel forming integral protein 28 (CHIP)) /FL=gb:L07268.1 gb:NM_012778.1 AA891661 aquaporin 1 Aqp1 25240 NM_012778 0003094 // glomerular filtration // inferred from electronic annotation /// 0003094 // glomerular filtration // not recorded /// 0003097 // renal water transport // not recorded /// 0006182 // cGMP biosynthetic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // not recorded /// 0006833 // water transport // inferred from mutant phenotype /// 0006833 // water transport // not recorded /// 0006833 // water transport // inferred from electronic annotation /// 0006884 // cell volume homeostasis // not recorded /// 0006972 // hyperosmotic response // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0010592 // positive regulation of lamellipodium assembly // inferred from mutant phenotype /// 0010634 // positive regulation of epithelial cell migration // inferred from mutant phenotype /// 0015670 // carbon dioxide transport // not recorded /// 0015696 // ammonium transport // not recorded /// 0015793 // glycerol transport // inferred from direct assay /// 0015793 // glycerol transport // not recorded /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0019233 // sensory perception of pain // not recorded /// 0019725 // cellular homeostasis // not recorded /// 0021670 // lateral ventricle development // inferred from expression pattern /// 0021670 // lateral ventricle development // not recorded /// 0021670 // lateral ventricle development // inferred from electronic annotation /// 0030104 // water homeostasis // inferred from electronic annotation /// 0030104 // water homeostasis // not recorded /// 0030157 // pancreatic juice secretion // not recorded /// 0030185 // nitric oxide transport // not recorded /// 0030335 // positive regulation of cell migration // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030950 // establishment or maintenance of actin cytoskeleton polarity // not recorded /// 0032940 // secretion by cell // inferred from electronic annotation /// 0032940 // secretion by cell // not recorded /// 0033326 // cerebrospinal fluid secretion // not recorded /// 0033363 // secretory granule organization // inferred from electronic annotation /// 0033363 // secretory granule organization // not recorded /// 0033554 // cellular response to stress // not recorded /// 0034644 // cellular response to UV // not recorded /// 0035377 // transepithelial water transport // not recorded /// 0035378 // carbon dioxide transmembrane transport // not recorded /// 0042060 // wound healing // inferred from electronic annotation /// 0042060 // wound healing // not recorded /// 0042476 // odontogenesis // not recorded /// 0042493 // response to drug // not recorded /// 0042538 // hyperosmotic salinity response // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // not recorded /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0044241 // lipid digestion // inferred from electronic annotation /// 0044241 // lipid digestion // not recorded /// 0045766 // positive regulation of angiogenesis // not recorded /// 0046878 // positive regulation of saliva secretion // not recorded /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // not recorded /// 0050891 // multicellular organismal water homeostasis // not recorded /// 0051458 // adrenocorticotropin secretion // inferred from electronic annotation /// 0051458 // adrenocorticotropin secretion // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070295 // renal water absorption // inferred from electronic annotation /// 0070295 // renal water absorption // not recorded /// 0070301 // cellular response to hydrogen peroxide // not recorded /// 0071241 // cellular response to inorganic substance // not recorded /// 0071260 // cellular response to mechanical stimulus // not recorded /// 0071280 // cellular response to copper ion // not recorded /// 0071288 // cellular response to mercury ion // not recorded /// 0071300 // cellular response to retinoic acid // not recorded /// 0071320 // cellular response to cAMP // not recorded /// 0071456 // cellular response to hypoxia // not recorded /// 0071472 // cellular response to salt stress // not recorded /// 0071474 // cellular hyperosmotic response // not recorded /// 0071549 // cellular response to dexamethasone stimulus // not recorded /// 0071732 // cellular response to nitric oxide // not recorded /// 0085018 // maintenance of symbiont-containing vacuole via substance secreted by host // not recorded 0000299 // integral to membrane of membrane fraction // inferred from electronic annotation /// 0000299 // integral to membrane of membrane fraction // not recorded /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005902 // microvillus // inferred from direct assay /// 0005903 // brush border // inferred from direct assay /// 0005903 // brush border // not recorded /// 0005903 // brush border // inferred from electronic annotation /// 0009925 // basal plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0020005 // symbiont-containing vacuole membrane // not recorded /// 0031526 // brush border membrane // not recorded /// 0031965 // nuclear membrane // not recorded /// 0032809 // neuronal cell body membrane // inferred from direct assay /// 0033267 // axon part // not recorded /// 0033267 // axon part // inferred from electronic annotation /// 0042383 // sarcolemma // not recorded /// 0043005 // neuron projection // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay /// 0045177 // apical part of cell // not recorded /// 0070062 // extracellular vesicular exosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // not recorded 0005215 // transporter activity // inferred from electronic annotation /// 0005223 // intracellular cGMP activated cation channel activity // not recorded /// 0005267 // potassium channel activity // not recorded /// 0005372 // water transmembrane transporter activity // not recorded /// 0005372 // water transmembrane transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0015079 // potassium ion transmembrane transporter activity // inferred from electronic annotation /// 0015079 // potassium ion transmembrane transporter activity // not recorded /// 0015168 // glycerol transmembrane transporter activity // inferred from direct assay /// 0015168 // glycerol transmembrane transporter activity // not recorded /// 0015250 // water channel activity // inferred from mutant phenotype /// 0015250 // water channel activity // not recorded /// 0022857 // transmembrane transporter activity // not recorded /// 0030184 // nitric oxide transmembrane transporter activity // not recorded /// 0035379 // carbon dioxide transmembrane transporter activity // not recorded /// 0051739 // ammonia transmembrane transporter activity // not recorded 1369626_at NM_013159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013159.1 /DB_XREF=gi:6981075 /GEN=Ide /FEA=FLmRNA /CNT=37 /TID=Rn.10988.1 /TIER=FL /STK=1 /UG=Rn.10988 /LL=25700 /DEF=Rattus norvegicus Insulin degrading enzyme (Ide), mRNA. /PROD=insulin degrading enzyme /FL=gb:NM_013159.1 NM_013159 insulin degrading enzyme Ide 25700 NM_013159 0006508 // proteolysis // inferred from electronic annotation /// 0010815 // bradykinin catabolic process // not recorded /// 0010815 // bradykinin catabolic process // inferred from sequence or structural similarity /// 0010815 // bradykinin catabolic process // inferred from electronic annotation /// 0042447 // hormone catabolic process // inferred from direct assay /// 0043171 // peptide catabolic process // traceable author statement /// 0044257 // cellular protein catabolic process // inferred from direct assay /// 0045861 // negative regulation of proteolysis // inferred from direct assay /// 0050435 // beta-amyloid metabolic process // inferred from mutant phenotype /// 0050435 // beta-amyloid metabolic process // not recorded /// 0050435 // beta-amyloid metabolic process // inferred from sequence or structural similarity /// 0050435 // beta-amyloid metabolic process // inferred from electronic annotation /// 0051289 // protein homotetramerization // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from mutant phenotype 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005782 // peroxisomal matrix // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0031597 // cytosolic proteasome complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001540 // beta-amyloid binding // inferred from physical interaction /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from direct assay /// 0004222 // metalloendopeptidase activity // inferred from mutant phenotype /// 0004222 // metalloendopeptidase activity // not recorded /// 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from physical interaction /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0008233 // peptidase activity // traceable author statement /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from mutant phenotype /// 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0017046 // peptide hormone binding // inferred from physical interaction /// 0031626 // beta-endorphin binding // inferred from mutant phenotype /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0043559 // insulin binding // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation 1369627_at L10362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L10362.1 /DB_XREF=gi:207093 /GEN=SV2B /FEA=FLmRNA /CNT=45 /TID=Rn.9940.1 /TIER=FL /STK=1 /UG=Rn.9940 /LL=117556 /DEF=Rattus norvegicus synaptic vesicle protein 2B (SV2B) mRNA, complete cds. /PROD=synaptic vesicle protein 2B /FL=gb:L10362.1 gb:AF372834.1 gb:NM_057207.2 L10362 synaptic vesicle glycoprotein 2b Sv2b 117556 NM_057207 0001504 // neurotransmitter uptake // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0008021 // synaptic vesicle // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369628_at BG672437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672437 /DB_XREF=gi:13894536 /DB_XREF=DRNCID03 /CLONE=DRNCID03 /FEA=FLmRNA /CNT=45 /TID=Rn.9940.1 /TIER=Stack /STK=10 /UG=Rn.9940 /LL=117556 /UG_GENE=Sv2b /UG_TITLE=synaptic vesicle glycoprotein 2 b /FL=gb:L10362.1 gb:AF372834.1 gb:NM_057207.2 BG672437 synaptic vesicle glycoprotein 2b Sv2b 117556 NM_057207 0001504 // neurotransmitter uptake // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0008021 // synaptic vesicle // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369629_at U90340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U90340.1 /DB_XREF=gi:1906012 /FEA=FLmRNA /CNT=37 /TID=Rn.3329.1 /TIER=FL /STK=1 /UG=Rn.3329 /LL=25368 /UG_GENE=Adk /DEF=Rattus norvegicus adenosine kinase mRNA, complete cds. /PROD=adenosine kinase /FL=gb:U57042.1 gb:NM_012895.1 gb:U90340.1 U90340 adenosine kinase Adk 25368 NM_012895 0006166 // purine ribonucleoside salvage // not recorded /// 0006166 // purine ribonucleoside salvage // non-traceable author statement /// 0006166 // purine ribonucleoside salvage // inferred from electronic annotation /// 0006175 // dATP biosynthetic process // inferred from electronic annotation /// 0006175 // dATP biosynthetic process // not recorded /// 0016310 // phosphorylation // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from expression pattern /// 0042102 // positive regulation of T cell proliferation // inferred from mutant phenotype /// 0046085 // adenosine metabolic process // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004001 // adenosine kinase activity // inferred from direct assay /// 0004001 // adenosine kinase activity // not recorded /// 0004001 // adenosine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369630_at BF283118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283118 /DB_XREF=gi:11214188 /DB_XREF=EST447709 /CLONE=RGIDX75 /FEA=FLmRNA /CNT=37 /TID=Rn.3329.1 /TIER=Stack /STK=12 /UG=Rn.3329 /LL=25368 /UG_GENE=Adk /UG_TITLE=Adenosin kinase /FL=gb:U57042.1 gb:NM_012895.1 gb:U90340.1 BF283118 adenosine kinase Adk 25368 NM_012895 0006166 // purine ribonucleoside salvage // not recorded /// 0006166 // purine ribonucleoside salvage // non-traceable author statement /// 0006166 // purine ribonucleoside salvage // inferred from electronic annotation /// 0006175 // dATP biosynthetic process // inferred from electronic annotation /// 0006175 // dATP biosynthetic process // not recorded /// 0016310 // phosphorylation // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from expression pattern /// 0042102 // positive regulation of T cell proliferation // inferred from mutant phenotype /// 0046085 // adenosine metabolic process // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004001 // adenosine kinase activity // inferred from direct assay /// 0004001 // adenosine kinase activity // not recorded /// 0004001 // adenosine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369631_at AI012566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012566 /DB_XREF=gi:3226398 /DB_XREF=EST207017 /CLONE=RPLAZ02 /FEA=FLmRNA /CNT=31 /TID=Rn.55135.1 /TIER=Stack /STK=6 /UG=Rn.55135 /LL=65261 /UG_GENE=Myr2 /UG_TITLE=unconventional myosin Myr2 I heavy chain /FL=gb:NM_023092.1 AI012566 myosin IC-like LOC100365624 100365624 XM_002724624 0016459 // myosin complex // inferred from electronic annotation 0003774 // motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1369632_a_at AB052294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB052294.1 /DB_XREF=gi:11691885 /GEN=SUR1 /FEA=FLmRNA /CNT=23 /TID=Rn.11187.1 /TIER=FL /STK=1 /UG=Rn.11187 /LL=25559 /DEF=Rattus norvegicus SUR1 mRNA for sulphonylurea receptor 1, complete cds. /PROD=sulphonylurea receptor 1 /FL=gb:NM_013039.1 gb:AB052294.1 gb:L40624.1 AB052294 ATP-binding cassette, sub-family C (CFTR/MRP), member 8 Abcc8 25559 NM_013039 0006810 // transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0009268 // response to pH // inferred from direct assay /// 0010043 // response to zinc ion // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0042221 // response to chemical stimulus // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0043268 // positive regulation of potassium ion transport // inferred from direct assay /// 0046676 // negative regulation of insulin secretion // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008282 // ATP-sensitive potassium channel complex // inferred from mutant phenotype /// 0008282 // ATP-sensitive potassium channel complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from mutant phenotype /// 0042383 // sarcolemma // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from electronic annotation /// 0008281 // sulfonylurea receptor activity // traceable author statement /// 0008281 // sulfonylurea receptor activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0019905 // syntaxin binding // inferred from direct assay /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 1369633_at AI171777 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171777 /DB_XREF=gi:3711817 /DB_XREF=EST217759 /CLONE=RMUBQ57 /FEA=FLmRNA /CNT=21 /TID=Rn.54439.1 /TIER=Stack /STK=6 /UG=Rn.54439 /LL=24772 /UG_GENE=Sdf1 /UG_TITLE=Stromal cell-derived factor 1 /FL=gb:AF209976.1 gb:NM_022177.2 gb:AF189724.1 AI171777 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1) Cxcl12 24772 NM_001033882 /// NM_001033883 /// NM_022177 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001667 // ameboidal cell migration // inferred from electronic annotation /// 0001667 // ameboidal cell migration // not recorded /// 0001764 // neuron migration // inferred from direct assay /// 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0006955 // immune response // inferred from electronic annotation /// 0007281 // germ cell development // inferred from electronic annotation /// 0007281 // germ cell development // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0008045 // motor axon guidance // inferred from electronic annotation /// 0008045 // motor axon guidance // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008344 // adult locomotory behavior // inferred from mutant phenotype /// 0008354 // germ cell migration // inferred from electronic annotation /// 0008354 // germ cell migration // not recorded /// 0009314 // response to radiation // inferred from expression pattern /// 0009408 // response to heat // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0016477 // cell migration // traceable author statement /// 0022029 // telencephalon cell migration // inferred from mutant phenotype /// 0030334 // regulation of cell migration // not recorded /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030335 // positive regulation of cell migration // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from mutant phenotype /// 0033603 // positive regulation of dopamine secretion // inferred from direct assay /// 0042098 // T cell proliferation // inferred from electronic annotation /// 0042098 // T cell proliferation // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0048842 // positive regulation of axon extension involved in axon guidance // inferred from mutant phenotype /// 0050930 // induction of positive chemotaxis // inferred from electronic annotation /// 0050930 // induction of positive chemotaxis // not recorded /// 0051929 // positive regulation of calcium ion transport via voltage-gated calcium channel activity // inferred from direct assay /// 0090026 // positive regulation of monocyte chemotaxis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // not recorded /// 0008009 // chemokine activity // traceable author statement 1369634_at AY030082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY030082.1 /DB_XREF=gi:16580102 /FEA=FLmRNA /CNT=34 /TID=Rn.32202.1 /TIER=FL /STK=1 /UG=Rn.32202 /LL=24779 /UG_GENE=Slc4a1 /DEF=Rattus norvegicus band 3 anion exchange protein mRNA, complete cds. /PROD=band 3 anion exchange protein /FL=gb:AY030082.1 gb:NM_012651.1 AY030082 solute carrier family 4 (anion exchanger), member 1 Slc4a1 24779 NM_012651 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006820 // anion transport // not recorded /// 0006820 // anion transport // inferred from electronic annotation /// 0006821 // chloride transport // not recorded /// 0006821 // chloride transport // traceable author statement /// 0006821 // chloride transport // inferred from electronic annotation /// 0015701 // bicarbonate transport // traceable author statement /// 0034220 // ion transmembrane transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from sequence or structural similarity /// 0030018 // Z disc // inferred from direct assay /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // not recorded 0003779 // actin binding // inferred from physical interaction /// 0005215 // transporter activity // inferred from electronic annotation /// 0005452 // inorganic anion exchanger activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008509 // anion transmembrane transporter activity // inferred from electronic annotation /// 0015108 // chloride transmembrane transporter activity // inferred from electronic annotation /// 0015108 // chloride transmembrane transporter activity // not recorded /// 0015301 // anion:anion antiporter activity // not recorded /// 0015301 // anion:anion antiporter activity // inferred from electronic annotation /// 0030506 // ankyrin binding // inferred from electronic annotation /// 0030506 // ankyrin binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1369635_at NM_017052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017052.1 /DB_XREF=gi:8394333 /GEN=Sord /FEA=FLmRNA /CNT=21 /TID=Rn.11334.1 /TIER=FL /STK=1 /UG=Rn.11334 /LL=24788 /DEF=Rattus norvegicus Sorbitol dehydrogenase (Sord), mRNA. /PROD=sorbitol dehydrogenase /FL=gb:NM_017052.1 NM_017052 sorbitol dehydrogenase Sord 24788 NM_017052 0006060 // sorbitol metabolic process // not recorded /// 0006062 // sorbitol catabolic process // not recorded /// 0006970 // response to osmotic stress // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from direct assay /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0046370 // fructose biosynthetic process // not recorded /// 0046686 // response to cadmium ion // inferred from direct assay /// 0046688 // response to copper ion // inferred from direct assay /// 0051160 // L-xylitol catabolic process // not recorded /// 0051164 // L-xylitol metabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005625 // soluble fraction // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0003939 // L-iditol 2-dehydrogenase activity // inferred from electronic annotation /// 0003939 // L-iditol 2-dehydrogenase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // not recorded 1369636_at BI285149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285149 /DB_XREF=gi:14938498 /DB_XREF=UI-R-DB0-byw-g-01-0-UI.s1 /CLONE=UI-R-DB0-byw-g-01-0-UI /FEA=FLmRNA /CNT=21 /TID=Rn.11334.1 /TIER=Stack /STK=15 /UG=Rn.11334 /LL=24788 /UG_GENE=Sord /UG_TITLE=Sorbitol dehydrogenase /FL=gb:NM_017052.1 BI285149 sorbitol dehydrogenase Sord 24788 NM_017052 0006060 // sorbitol metabolic process // not recorded /// 0006062 // sorbitol catabolic process // not recorded /// 0006970 // response to osmotic stress // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from direct assay /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0046370 // fructose biosynthetic process // not recorded /// 0046686 // response to cadmium ion // inferred from direct assay /// 0046688 // response to copper ion // inferred from direct assay /// 0051160 // L-xylitol catabolic process // not recorded /// 0051164 // L-xylitol metabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005625 // soluble fraction // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0003939 // L-iditol 2-dehydrogenase activity // inferred from electronic annotation /// 0003939 // L-iditol 2-dehydrogenase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // not recorded 1369637_at NM_053486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053486.1 /DB_XREF=gi:16758243 /GEN=Kif3c /FEA=FLmRNA /CNT=16 /TID=Rn.10894.1 /TIER=FL+Stack /STK=10 /UG=Rn.10894 /LL=85248 /DEF=Rattus norvegicus kinesin family member 3C (Kif3c), mRNA. /PROD=kinesin family member 3C /FL=gb:NM_053486.1 gb:AF083330.1 gb:AJ223599.1 NM_053486 kinesin family member 3C Kif3c 85248 NM_053486 0007018 // microtubule-based movement // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1369638_at NM_012947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012947.1 /DB_XREF=gi:6978794 /GEN=Eef2k /FEA=FLmRNA /CNT=20 /TID=Rn.10958.1 /TIER=FL /STK=1 /UG=Rn.10958 /LL=25435 /DEF=Rattus norvegicus Eukaryotic elongation factor 2 kinase (Eef2k), mRNA. /PROD=eukaryotic elongation factor 2 kinase /FL=gb:U93849.1 gb:NM_012947.1 NM_012947 eukaryotic elongation factor-2 kinase Eef2k 25435 NM_012947 0006468 // protein phosphorylation // inferred from electronic annotation 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004686 // elongation factor-2 kinase activity // inferred from mutant phenotype /// 0004686 // elongation factor-2 kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1369639_at NM_012567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012567.1 /DB_XREF=gi:6978895 /GEN=Gja1 /FEA=FLmRNA /CNT=16 /TID=Rn.10346.1 /TIER=FL /STK=1 /UG=Rn.10346 /LL=24392 /DEF=Rattus norvegicus Gap junction protein, alpha 1, 43 kD (connexin 43) (Gja1), mRNA. /PROD=gap junction protein, alpha 1, 43 kD (connexin43) /FL=gb:NM_012567.1 NM_012567 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001764 // neuron migration // inferred from electronic annotation /// 0001947 // heart looping // inferred from electronic annotation /// 0002070 // epithelial cell maturation // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from mutant phenotype /// 0007154 // cell communication // inferred from electronic annotation /// 0007154 // cell communication // inferred from mutant phenotype /// 0007267 // cell-cell signaling // inferred from direct assay /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007267 // cell-cell signaling // inferred from mutant phenotype /// 0007507 // heart development // inferred from electronic annotation /// 0007512 // adult heart development // inferred from electronic annotation /// 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0009268 // response to pH // inferred from direct assay /// 0010232 // vascular transport // inferred from mutant phenotype /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0015867 // ATP transport // inferred from mutant phenotype /// 0016264 // gap junction assembly // traceable author statement /// 0035050 // embryonic heart tube development // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043403 // skeletal muscle tissue regeneration // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045732 // positive regulation of protein catabolic process // inferred from direct assay /// 0045844 // positive regulation of striated muscle tissue development // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048812 // neuron projection morphogenesis // inferred from mutant phenotype /// 0051259 // protein oligomerization // inferred from direct assay /// 0051924 // regulation of calcium ion transport // inferred from mutant phenotype /// 0060174 // limb bud formation // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0005771 // multivesicular body // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from mutant phenotype /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005916 // fascia adherens // inferred from direct assay /// 0005921 // gap junction // inferred from direct assay /// 0005921 // gap junction // inferred from electronic annotation /// 0005922 // connexon complex // inferred from direct assay /// 0005922 // connexon complex // inferred from electronic annotation /// 0005922 // connexon complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from electronic annotation /// 0005243 // gap junction channel activity // inferred from direct assay /// 0005243 // gap junction channel activity // inferred from electronic annotation /// 0005243 // gap junction channel activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from direct assay /// 0022857 // transmembrane transporter activity // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction 1369640_at BG378227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378227 /DB_XREF=gi:13302699 /DB_XREF=UI-R-CV1-bvp-e-08-0-UI.s1 /CLONE=UI-R-CV1-bvp-e-08-0-UI /FEA=FLmRNA /CNT=16 /TID=Rn.10346.1 /TIER=Stack /STK=10 /UG=Rn.10346 /LL=24392 /UG_GENE=Gja1 /UG_TITLE=Gap junction protein, alpha 1, 43 kD (connexin 43) /FL=gb:NM_012567.1 BG378227 gap junction protein, alpha 1 Gja1 24392 NM_012567 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0001947 // heart looping // inferred from electronic annotation /// 0001947 // heart looping // not recorded /// 0002070 // epithelial cell maturation // inferred from electronic annotation /// 0002070 // epithelial cell maturation // not recorded /// 0006915 // apoptosis // inferred from mutant phenotype /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007154 // cell communication // inferred from mutant phenotype /// 0007154 // cell communication // inferred from electronic annotation /// 0007267 // cell-cell signaling // inferred from direct assay /// 0007267 // cell-cell signaling // inferred from mutant phenotype /// 0007267 // cell-cell signaling // not recorded /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007512 // adult heart development // inferred from electronic annotation /// 0007512 // adult heart development // not recorded /// 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0008016 // regulation of heart contraction // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0009268 // response to pH // inferred from direct assay /// 0010232 // vascular transport // inferred from mutant phenotype /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // not recorded /// 0015867 // ATP transport // inferred from mutant phenotype /// 0016264 // gap junction assembly // traceable author statement /// 0035050 // embryonic heart tube development // inferred from electronic annotation /// 0035050 // embryonic heart tube development // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043403 // skeletal muscle tissue regeneration // inferred from electronic annotation /// 0043403 // skeletal muscle tissue regeneration // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045732 // positive regulation of protein catabolic process // inferred from direct assay /// 0045844 // positive regulation of striated muscle tissue development // inferred from electronic annotation /// 0045844 // positive regulation of striated muscle tissue development // not recorded /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // not recorded /// 0048812 // neuron projection morphogenesis // inferred from mutant phenotype /// 0051259 // protein oligomerization // inferred from direct assay /// 0051924 // regulation of calcium ion transport // inferred from mutant phenotype /// 0055085 // transmembrane transport // not recorded /// 0060174 // limb bud formation // inferred from electronic annotation /// 0060174 // limb bud formation // not recorded 0000139 // Golgi membrane // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0005771 // multivesicular body // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from mutant phenotype /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0005911 // cell-cell junction // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005916 // fascia adherens // inferred from direct assay /// 0005921 // gap junction // inferred from direct assay /// 0005921 // gap junction // not recorded /// 0005921 // gap junction // inferred from electronic annotation /// 0005922 // connexon complex // inferred from direct assay /// 0005922 // connexon complex // traceable author statement /// 0005922 // connexon complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030660 // Golgi-associated vesicle membrane // not recorded /// 0045121 // membrane raft // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005243 // gap junction channel activity // inferred from direct assay /// 0005243 // gap junction channel activity // not recorded /// 0005243 // gap junction channel activity // traceable author statement /// 0005243 // gap junction channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from direct assay /// 0022857 // transmembrane transporter activity // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction 1369641_at AF016048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF016048.1 /DB_XREF=gi:2501858 /GEN=PAF-AH alpha 2 /FEA=FLmRNA /CNT=16 /TID=Rn.24751.1 /TIER=FL /STK=1 /UG=Rn.24751 /LL=64189 /DEF=Rattus norvegicus platelet-activating factor acetylhydrolase alpha 2 subunit (PAF-AH alpha 2) mRNA, complete cds. /PROD=platelet-activating factor acetylhydrolase alpha2 subunit /FL=gb:NM_022387.1 gb:AF016048.1 AF016048 platelet-activating factor acetylhydrolase, isoform 1b, subunit 2 Pafah1b2 64189 NM_022387 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0016042 // lipid catabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay 0003847 // 1-alkyl-2-acetylglycerophosphocholine esterase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0047179 // platelet-activating factor acetyltransferase activity // inferred from direct assay /// 0047179 // platelet-activating factor acetyltransferase activity // traceable author statement 1369642_at BM392366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392366 /DB_XREF=gi:18192419 /DB_XREF=UI-R-DO1-ckp-p-08-0-UI.s1 /CLONE=UI-R-DO1-ckp-p-08-0-UI /FEA=FLmRNA /CNT=16 /TID=Rn.24751.1 /TIER=Stack /STK=6 /UG=Rn.24751 /LL=64189 /UG_GENE=Pafah1b2 /UG_TITLE=platelet-activating factor acetylhydrolase alpha 2 subunit (PAF-AH alpha 2) /FL=gb:NM_022387.1 gb:AF016048.1 BM392366 platelet-activating factor acetylhydrolase, isoform 1b, subunit 2 Pafah1b2 64189 NM_022387 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0016042 // lipid catabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay 0003847 // 1-alkyl-2-acetylglycerophosphocholine esterase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0047179 // platelet-activating factor acetyltransferase activity // inferred from direct assay /// 0047179 // platelet-activating factor acetyltransferase activity // traceable author statement 1369643_a_at AF081153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF081153.1 /DB_XREF=gi:3695132 /FEA=FLmRNA /CNT=20 /TID=Rn.12089.1 /TIER=FL /STK=1 /UG=Rn.12089 /LL=171447 /UG_GENE=Cirl2 /DEF=Rattus norvegicus CL2BC mRNA, complete cds. /PROD=CL2BC /FL=gb:NM_134408.1 gb:AF081153.1 gb:AF063102.1 AF081153 latrophilin 2 Lphn2 171447 NM_001190475 /// NM_134408 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0005529 // sugar binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction 1369644_at NM_134408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134408.1 /DB_XREF=gi:19705538 /GEN=Cirl2 /FEA=FLmRNA /CNT=20 /TID=Rn.12089.1 /TIER=FL+Stack /STK=6 /UG=Rn.12089 /LL=171447 /DEF=Rattus norvegicus calcium-independent alpha-latrotoxin receptor homolog 2 (Cirl2), mRNA. /PROD=calcium-independent alpha-latrotoxin receptorhomolog 2 /FL=gb:NM_134408.1 gb:AF081153.1 gb:AF063102.1 NM_134408 latrophilin 2 Lphn2 171447 NM_001190475 /// NM_134408 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0005529 // sugar binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction 1369645_at D16438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D16438.1 /DB_XREF=gi:456168 /GEN=ROR-C /FEA=FLmRNA /CNT=16 /TID=Rn.9762.1 /TIER=FL /STK=1 /UG=Rn.9762 /LL=29256 /DEF=Rat mRNA for opioid receptor, complete cds. /PROD=opioid receptor /FL=gb:D16438.1 gb:L28144.1 gb:NM_031569.1 gb:U05239.1 gb:U01913.1 gb:U07871.1 gb:L33916.1 D16438 opiate receptor-like 1 Oprl1 29256 NM_031569 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // not recorded /// 0004985 // opioid receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015051 // X-opioid receptor activity // inferred from electronic annotation 1369646_at NM_031569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031569.1 /DB_XREF=gi:13928771 /GEN=Oprl /FEA=FLmRNA /CNT=16 /TID=Rn.9762.1 /TIER=FL+Stack /STK=8 /UG=Rn.9762 /LL=29256 /DEF=Rattus norvegicus opioid receptor-like (Oprl), mRNA. /PROD=opioid receptor-like /FL=gb:D16438.1 gb:L28144.1 gb:NM_031569.1 gb:U05239.1 gb:U01913.1 gb:U07871.1 gb:L33916.1 NM_031569 opiate receptor-like 1 Oprl1 29256 NM_031569 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // not recorded /// 0004985 // opioid receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015051 // X-opioid receptor activity // inferred from electronic annotation 1369647_at NM_012717 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012717.1 /DB_XREF=gi:6978586 /GEN=Calcrl /FEA=FLmRNA /CNT=14 /TID=Rn.11202.1 /TIER=FL /STK=1 /UG=Rn.11202 /LL=25029 /DEF=Rattus norvegicus Calcitonin receptor-like receptor (Calcrl), mRNA. /PROD=calcitonin receptor-like receptor /FL=gb:NM_012717.1 NM_012717 calcitonin receptor-like Calcrl 25029 NM_012717 0006937 // regulation of muscle contraction // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // not recorded /// 0050728 // negative regulation of inflammatory response // inferred from mutant phenotype 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001635 // calcitonin gene-related polypeptide receptor activity // inferred from electronic annotation /// 0001635 // calcitonin gene-related polypeptide receptor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004948 // calcitonin receptor activity // inferred from mutant phenotype /// 0004948 // calcitonin receptor activity // inferred from electronic annotation 1369648_at L27487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L27487.1 /DB_XREF=gi:440339 /FEA=FLmRNA /CNT=14 /TID=Rn.11202.1 /TIER=ConsEnd /STK=0 /UG=Rn.11202 /LL=25029 /UG_GENE=Calcrl /UG_TITLE=Calcitonin receptor-like receptor /DEF=Rat calcitonin receptor-like receptor (CRLR) mRNA. /FL=gb:NM_012717.1 L27487 calcitonin receptor-like Calcrl 25029 NM_012717 0006937 // regulation of muscle contraction // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // not recorded /// 0050728 // negative regulation of inflammatory response // inferred from mutant phenotype 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001635 // calcitonin gene-related polypeptide receptor activity // inferred from electronic annotation /// 0001635 // calcitonin gene-related polypeptide receptor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004948 // calcitonin receptor activity // inferred from mutant phenotype /// 0004948 // calcitonin receptor activity // inferred from electronic annotation 1369649_at AF400662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF400662.1 /DB_XREF=gi:17864879 /FEA=FLmRNA /CNT=18 /TID=Rn.11276.1 /TIER=FL /STK=1 /UG=Rn.11276 /LL=25399 /UG_GENE=Cacna2d1 /DEF=Rattus norvegicus L-type calcium channel alpha2delta subunit mRNA, complete cds. /PROD=L-type calcium channel alpha2delta subunit /FL=gb:NM_012919.1 gb:M86621.1 gb:AF400662.1 gb:AF286488.1 AF400662 calcium channel, voltage-dependent, alpha2/delta subunit 1 Cacna2d1 25399 NM_001110847 /// NM_001110848 /// NM_012919 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006816 // calcium ion transport // traceable author statement /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0051924 // regulation of calcium ion transport // inferred from electronic annotation /// 0051924 // regulation of calcium ion transport // not recorded 0005891 // voltage-gated calcium channel complex // inferred from mutant phenotype /// 0005891 // voltage-gated calcium channel complex // not recorded /// 0005891 // voltage-gated calcium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // not recorded /// 0030315 // T-tubule // inferred from electronic annotation /// 0030315 // T-tubule // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from mutant phenotype /// 0005245 // voltage-gated calcium channel activity // not recorded /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1369650_at U19967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U19967.1 /DB_XREF=gi:6288679 /FEA=FLmRNA /CNT=10 /TID=Rn.80141.1 /TIER=FL /STK=1 /UG=Rn.80141 /LL=29432 /UG_GENE=Pak2 /DEF=Rattus norvegicus serinethreonine protein kinase PAK2 mRNA, complete cds. /PROD=PAK2 /FL=gb:NM_053306.1 gb:U19967.1 gb:U35345.1 U19967 p21 protein (Cdc42/Rac)-activated kinase 2 Pak2 29432 NM_053306 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1369651_at NM_012673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012673.1 /DB_XREF=gi:6981653 /GEN=Thy1 /FEA=FLmRNA /CNT=20 /TID=Rn.34356.1 /TIER=FL /STK=1 /UG=Rn.34356 /LL=24832 /DEF=Rattus norvegicus Thymus cell surface antigen (Thy1), mRNA. /PROD=thymus cell surface antigen /FL=gb:NM_012673.1 NM_012673 Thy-1 cell surface antigen Thy1 24832 NM_012673 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from sequence or structural similarity /// 0001525 // angiogenesis // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from direct assay /// 0007010 // cytoskeleton organization // inferred from direct assay /// 0016337 // cell-cell adhesion // inferred from mutant phenotype /// 0030336 // negative regulation of cell migration // inferred from direct assay /// 0043066 // negative regulation of apoptosis // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from direct assay /// 0045576 // mast cell activation // non-traceable author statement /// 0046549 // retinal cone cell development // not recorded /// 0046549 // retinal cone cell development // inferred from sequence or structural similarity /// 0046549 // retinal cone cell development // inferred from electronic annotation /// 0048041 // focal adhesion assembly // inferred from direct assay /// 0048147 // negative regulation of fibroblast proliferation // non-traceable author statement /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // non-traceable author statement /// 0050771 // negative regulation of axonogenesis // inferred from direct assay /// 0050852 // T cell receptor signaling pathway // inferred from mutant phenotype /// 0050860 // negative regulation of T cell receptor signaling pathway // not recorded /// 0050860 // negative regulation of T cell receptor signaling pathway // inferred from sequence or structural similarity /// 0050860 // negative regulation of T cell receptor signaling pathway // inferred from electronic annotation /// 0050870 // positive regulation of T cell activation // inferred from direct assay /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from sequence or structural similarity /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0030426 // growth cone // inferred from direct assay /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0031362 // anchored to external side of plasma membrane // inferred from electronic annotation /// 0031362 // anchored to external side of plasma membrane // not recorded /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded /// 0046658 // anchored to plasma membrane // inferred from direct assay 0005100 // Rho GTPase activator activity // inferred from direct assay /// 0005178 // integrin binding // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0034235 // GPI anchor binding // inferred from direct assay 1369652_at AI145313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145313 /DB_XREF=gi:3667112 /DB_XREF=UI-R-BT0-pq-e-10-0-UI.s1 /CLONE=UI-R-BT0-pq-e-10-0-UI /FEA=FLmRNA /CNT=20 /TID=Rn.34356.1 /TIER=Stack /STK=7 /UG=Rn.34356 /LL=24832 /UG_GENE=Thy1 /UG_TITLE=Thymus cell surface antigen /FL=gb:NM_012673.1 AI145313 Thy-1 cell surface antigen Thy1 24832 NM_012673 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from sequence or structural similarity /// 0001525 // angiogenesis // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from direct assay /// 0007010 // cytoskeleton organization // inferred from direct assay /// 0016337 // cell-cell adhesion // inferred from mutant phenotype /// 0030336 // negative regulation of cell migration // inferred from direct assay /// 0043066 // negative regulation of apoptosis // traceable author statement /// 0043547 // positive regulation of GTPase activity // inferred from direct assay /// 0045576 // mast cell activation // non-traceable author statement /// 0046549 // retinal cone cell development // not recorded /// 0046549 // retinal cone cell development // inferred from sequence or structural similarity /// 0046549 // retinal cone cell development // inferred from electronic annotation /// 0048041 // focal adhesion assembly // inferred from direct assay /// 0048147 // negative regulation of fibroblast proliferation // non-traceable author statement /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // non-traceable author statement /// 0050771 // negative regulation of axonogenesis // inferred from direct assay /// 0050852 // T cell receptor signaling pathway // inferred from mutant phenotype /// 0050860 // negative regulation of T cell receptor signaling pathway // not recorded /// 0050860 // negative regulation of T cell receptor signaling pathway // inferred from sequence or structural similarity /// 0050860 // negative regulation of T cell receptor signaling pathway // inferred from electronic annotation /// 0050870 // positive regulation of T cell activation // inferred from direct assay /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from sequence or structural similarity /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0030426 // growth cone // inferred from direct assay /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0031362 // anchored to external side of plasma membrane // inferred from electronic annotation /// 0031362 // anchored to external side of plasma membrane // not recorded /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded /// 0046658 // anchored to plasma membrane // inferred from direct assay 0005100 // Rho GTPase activator activity // inferred from direct assay /// 0005178 // integrin binding // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0034235 // GPI anchor binding // inferred from direct assay 1369653_at L09653 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L09653.1 /DB_XREF=gi:207289 /FEA=FLmRNA /CNT=14 /TID=Rn.9954.1 /TIER=FL /STK=1 /UG=Rn.9954 /LL=81810 /UG_GENE=Tgfbr2 /DEF=Rattus norvegicus transforming growth factor-b type II receptor mRNA, complete cds. /PROD=transforming growth factor-b type II receptor /FL=gb:NM_031132.1 gb:L09653.1 gb:S67770.1 L09653 transforming growth factor, beta receptor II Tgfbr2 81810 NM_031132 0001569 // patterning of blood vessels // not recorded /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from expression pattern /// 0001570 // vasculogenesis // not recorded /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001666 // response to hypoxia // traceable author statement /// 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002651 // positive regulation of tolerance induction to self antigen // not recorded /// 0002651 // positive regulation of tolerance induction to self antigen // inferred from electronic annotation /// 0002663 // positive regulation of B cell tolerance induction // not recorded /// 0002663 // positive regulation of B cell tolerance induction // inferred from electronic annotation /// 0002666 // positive regulation of T cell tolerance induction // not recorded /// 0002666 // positive regulation of T cell tolerance induction // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006898 // receptor-mediated endocytosis // inferred from direct assay /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007182 // common-partner SMAD protein phosphorylation // inferred from direct assay /// 0007224 // smoothened signaling pathway // not recorded /// 0007224 // smoothened signaling pathway // inferred from electronic annotation /// 0007369 // gastrulation // not recorded /// 0007369 // gastrulation // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007566 // embryo implantation // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // inferred from genetic interaction /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0009790 // embryo development // inferred from expression pattern /// 0009887 // organ morphogenesis // inferred from mutant phenotype /// 0010033 // response to organic substance // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0018107 // peptidyl-threonine phosphorylation // not recorded /// 0030324 // lung development // inferred from expression pattern /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from expression pattern /// 0032147 // activation of protein kinase activity // not recorded /// 0032147 // activation of protein kinase activity // inferred from electronic annotation /// 0035162 // embryonic hemopoiesis // not recorded /// 0035162 // embryonic hemopoiesis // inferred from electronic annotation /// 0042060 // wound healing // inferred from expression pattern /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0043011 // myeloid dendritic cell differentiation // not recorded /// 0043011 // myeloid dendritic cell differentiation // inferred from electronic annotation /// 0043415 // positive regulation of skeletal muscle tissue regeneration // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0048565 // digestive tract development // inferred from expression pattern /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0048701 // embryonic cranial skeleton morphogenesis // not recorded /// 0048701 // embryonic cranial skeleton morphogenesis // inferred from electronic annotation /// 0051138 // positive regulation of NK T cell differentiation // not recorded /// 0051138 // positive regulation of NK T cell differentiation // inferred from electronic annotation /// 0060021 // palate development // not recorded /// 0060021 // palate development // inferred from electronic annotation /// 0060044 // negative regulation of cardiac muscle cell proliferation // inferred from mutant phenotype /// 0060389 // pathway-restricted SMAD protein phosphorylation // not recorded /// 0060425 // lung morphogenesis // not recorded /// 0060425 // lung morphogenesis // inferred from electronic annotation /// 0060433 // bronchus development // not recorded /// 0060433 // bronchus development // inferred from electronic annotation /// 0060434 // bronchus morphogenesis // not recorded /// 0060434 // bronchus morphogenesis // inferred from electronic annotation /// 0060439 // trachea morphogenesis // not recorded /// 0060439 // trachea morphogenesis // inferred from electronic annotation /// 0060440 // trachea formation // not recorded /// 0060440 // trachea formation // inferred from electronic annotation /// 0060443 // mammary gland morphogenesis // not recorded /// 0060443 // mammary gland morphogenesis // inferred from electronic annotation /// 0060463 // lung lobe morphogenesis // not recorded /// 0060463 // lung lobe morphogenesis // inferred from electronic annotation /// 0070723 // response to cholesterol // not recorded /// 0070723 // response to cholesterol // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0005901 // caveola // inferred from mutant phenotype /// 0005901 // caveola // not recorded /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0043235 // receptor complex // inferred from electronic annotation /// 0043235 // receptor complex // not recorded /// 0070022 // transforming growth factor beta receptor complex // inferred by curator 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // not recorded /// 0004702 // receptor signaling protein serine/threonine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta receptor activity // not recorded /// 0005026 // transforming growth factor beta receptor activity, type II // inferred from electronic annotation /// 0005026 // transforming growth factor beta receptor activity, type II // inferred from mutant phenotype /// 0005026 // transforming growth factor beta receptor activity, type II // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005539 // glycosaminoglycan binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from physical interaction /// 0034713 // type I transforming growth factor beta receptor binding // not recorded /// 0034714 // type III transforming growth factor beta receptor binding // not recorded /// 0042803 // protein homodimerization activity // traceable author statement /// 0046332 // SMAD binding // not recorded /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // traceable author statement /// 0050431 // transforming growth factor beta binding // not recorded 1369654_at NM_023991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023991.1 /DB_XREF=gi:13027453 /GEN=Prkaa2 /FEA=FLmRNA /CNT=13 /TID=Rn.64583.1 /TIER=FL /STK=1 /UG=Rn.64583 /LL=78975 /DEF=Rattus norvegicus AMP-activated protein kinase (Prkaa2), mRNA. /PROD=AMP-activated protein kinase /FL=gb:NM_023991.1 NM_023991 protein kinase, AMP-activated, alpha 2 catalytic subunit Prkaa2 78975 NM_023991 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0006950 // response to stress // inferred from direct assay /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0014823 // response to activity // inferred from direct assay /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0019216 // regulation of lipid metabolic process // inferred from direct assay /// 0031000 // response to caffeine // inferred from direct assay /// 0046320 // regulation of fatty acid oxidation // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0071417 // cellular response to organic nitrogen // inferred from expression pattern 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0031588 // AMP-activated protein kinase complex // inferred from direct assay /// 0031588 // AMP-activated protein kinase complex // inferred from mutant phenotype /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004679 // AMP-activated protein kinase activity // inferred from direct assay /// 0004679 // AMP-activated protein kinase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030674 // protein binding, bridging // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1369655_at NM_022958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022958.1 /DB_XREF=gi:12621139 /GEN=Pik3c3 /FEA=FLmRNA /CNT=12 /TID=Rn.30010.1 /TIER=FL /STK=1 /UG=Rn.30010 /LL=65052 /DEF=Rattus norvegicus phosphatidylinositol 3-kinase (Pik3c3), mRNA. /PROD=phosphatidylinositol 3-kinase /FL=gb:NM_022958.1 NM_022958 phosphoinositide-3-kinase, class 3 Pik3c3 65052 NM_022958 0000045 // autophagic vacuole assembly // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007032 // endosome organization // inferred from mutant phenotype /// 0043201 // response to leucine // inferred from expression pattern /// 0046854 // phosphoinositide phosphorylation // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // inferred from direct assay /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation /// 0050708 // regulation of protein secretion // inferred from mutant phenotype /// 0051605 // protein maturation by peptide bond cleavage // inferred from mutant phenotype 0005829 // cytosol // not recorded /// 0005942 // phosphoinositide 3-kinase complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004428 // inositol or phosphatidylinositol kinase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from direct assay /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0035004 // phosphoinositide 3-kinase activity // inferred from mutant phenotype 1369656_at M36071 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M36071.1 /DB_XREF=gi:203651 /FEA=FLmRNA /CNT=12 /TID=Rn.81192.1 /TIER=FL /STK=1 /UG=Rn.81192 /LL=140544 /UG_GENE=Pcyt1a /DEF=Rat CTP:phosphochlone cytidylyltransferase mRNA, complete cds. /PROD=CTP:phosphocholine cytidylyltransferase /FL=gb:NM_078622.1 gb:M36071.1 M36071 phosphate cytidylyltransferase 1, choline, alpha Pcyt1a 140544 NM_078622 0006656 // phosphatidylcholine biosynthetic process // not recorded /// 0006656 // phosphatidylcholine biosynthetic process // traceable author statement /// 0006656 // phosphatidylcholine biosynthetic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009628 // response to abiotic stimulus // inferred from electronic annotation /// 0009628 // response to abiotic stimulus // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic to membrane // non-traceable author statement /// 0042587 // glycogen granule // inferred from electronic annotation /// 0042587 // glycogen granule // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004105 // choline-phosphate cytidylyltransferase activity // inferred from direct assay /// 0004105 // choline-phosphate cytidylyltransferase activity // inferred from electronic annotation /// 0008289 // lipid binding // inferred from mutant phenotype /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1369657_at NM_016998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_016998.1 /DB_XREF=gi:8393182 /GEN=Cpa1 /FEA=FLmRNA /CNT=10 /TID=Rn.9576.1 /TIER=FL /STK=1 /UG=Rn.9576 /LL=24269 /DEF=Rattus norvegicus Carboxypeptidase A1 (pancreatic) (Cpa1), mRNA. /PROD=carboxypeptidase A1 (pancreatic) /FL=gb:NM_016998.1 NM_016998 carboxypeptidase A1 Cpa1 24269 NM_016998 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0051603 // proteolysis involved in cellular protein catabolic process // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005625 // soluble fraction // inferred from direct assay 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008238 // exopeptidase activity // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369658_at NM_012524 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012524.1 /DB_XREF=gi:6978640 /GEN=Cebpa /FEA=FLmRNA /CNT=10 /TID=Rn.22163.1 /TIER=FL /STK=1 /UG=Rn.22163 /LL=24252 /DEF=Rattus norvegicus CAATenhancer-binding protein, DNA-binding protein (Cebpa), mRNA. /PROD=CAATenhancer-binding protein, DNA-bindingprotein /FL=gb:NM_012524.1 NM_012524 CCAAT/enhancer binding protein (C/EBP), alpha Cebpa 24252 NM_012524 0000050 // urea cycle // inferred from electronic annotation /// 0000050 // urea cycle // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001889 // liver development // inferred from expression pattern /// 0001889 // liver development // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0001892 // embryonic placenta development // not recorded /// 0006350 // transcription // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006953 // acute-phase response // inferred from expression pattern /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016481 // negative regulation of transcription // inferred from direct assay /// 0030099 // myeloid cell differentiation // inferred from electronic annotation /// 0030099 // myeloid cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from expression pattern /// 0030225 // macrophage differentiation // inferred from electronic annotation /// 0030225 // macrophage differentiation // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0033274 // response to vitamin B2 // inferred from expression pattern /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0045444 // fat cell differentiation // not recorded /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045600 // positive regulation of fat cell differentiation // inferred from mutant phenotype /// 0045600 // positive regulation of fat cell differentiation // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045945 // positive regulation of transcription from RNA polymerase III promoter // inferred from electronic annotation /// 0045945 // positive regulation of transcription from RNA polymerase III promoter // not recorded /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded /// 0050872 // white fat cell differentiation // inferred from electronic annotation /// 0050872 // white fat cell differentiation // not recorded /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0071285 // cellular response to lithium ion // not recorded /// 0071407 // cellular response to organic cyclic substance // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from direct assay /// 0005667 // transcription factor complex // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from direct assay /// 0035189 // Rb-E2F complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003704 // specific RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003704 // specific RNA polymerase II transcription factor activity // not recorded /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // traceable author statement /// 0016564 // transcription repressor activity // traceable author statement /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046983 // protein dimerization activity // inferred from electronic annotation 1369659_at NM_053918 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053918.1 /DB_XREF=gi:16758785 /GEN=Cga /FEA=FLmRNA /CNT=9 /TID=Rn.10589.1 /TIER=FL /STK=1 /UG=Rn.10589 /LL=116700 /DEF=Rattus norvegicus glycoprotein hormones, alpha subunit (Cga), mRNA. /PROD=glycoprotein hormones, alpha subunit /FL=gb:D00575.1 gb:NM_053918.1 NM_053918 glycoprotein hormones, alpha polypeptide Cga 116700 NM_053918 0006590 // thyroid hormone generation // inferred from electronic annotation /// 0006590 // thyroid hormone generation // not recorded /// 0006590 // thyroid hormone generation // inferred from mutant phenotype /// 0008406 // gonad development // inferred from electronic annotation /// 0008406 // gonad development // not recorded /// 0008406 // gonad development // inferred from mutant phenotype /// 0030878 // thyroid gland development // inferred from electronic annotation /// 0030878 // thyroid gland development // not recorded /// 0030878 // thyroid gland development // inferred from mutant phenotype /// 0032275 // luteinizing hormone secretion // inferred from electronic annotation /// 0032275 // luteinizing hormone secretion // not recorded /// 0032275 // luteinizing hormone secretion // inferred from mutant phenotype /// 0032870 // cellular response to hormone stimulus // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // not recorded /// 0032870 // cellular response to hormone stimulus // inferred from mutant phenotype /// 0046621 // negative regulation of organ growth // inferred from electronic annotation /// 0046621 // negative regulation of organ growth // not recorded /// 0046621 // negative regulation of organ growth // inferred from mutant phenotype /// 0046884 // follicle-stimulating hormone secretion // inferred from electronic annotation /// 0046884 // follicle-stimulating hormone secretion // not recorded /// 0046884 // follicle-stimulating hormone secretion // inferred from mutant phenotype /// 0048589 // developmental growth // inferred from electronic annotation /// 0048589 // developmental growth // not recorded /// 0048589 // developmental growth // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded 0005179 // hormone activity // inferred from electronic annotation 1369660_at AF068860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF068860.1 /DB_XREF=gi:3366931 /FEA=FLmRNA /CNT=9 /TID=Rn.31800.1 /TIER=FL /STK=1 /UG=Rn.31800 /LL=83687 /UG_GENE=Defb1 /DEF=Rattus norvegicus beta defensin-1 mRNA, complete cds. /PROD=beta defensin-1 /FL=gb:NM_031810.1 gb:AF093536.1 gb:AF068860.1 AF068860 defensin beta 1 Defb1 83687 NM_031810 0006952 // defense response // inferred from electronic annotation /// 0009617 // response to bacterium // not recorded /// 0009617 // response to bacterium // inferred from electronic annotation /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation /// 0045087 // innate immune response // not recorded 0005576 // extracellular region // inferred from electronic annotation 1369661_at L24562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L24562.1 /DB_XREF=gi:404072 /GEN=DYN2 /FEA=FLmRNA /CNT=13 /TID=Rn.11231.1 /TIER=FL /STK=1 /UG=Rn.11231 /LL=25751 /DEF=Rattus norvegicus dynamin isoform (DYN2) mRNA, complete cds. /PROD=dynamin /FL=gb:NM_013199.1 gb:L24562.1 gb:L25605.1 L24562 dynamin 2 Dnm2 25751 NM_013199 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0006897 // endocytosis // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from direct assay /// 0016044 // cellular membrane organization // not recorded /// 0031623 // receptor internalization // not recorded /// 0033572 // transferrin transport // not recorded 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // not recorded /// 0045211 // postsynaptic membrane // inferred from sequence or structural similarity /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0045334 // clathrin-coated endocytic vesicle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from direct assay 1369662_at NM_012647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012647.1 /DB_XREF=gi:6981505 /GEN=Scn2a1 /FEA=FLmRNA /CNT=10 /TID=Rn.10136.1 /TIER=FL /STK=1 /UG=Rn.10136 /LL=24766 /DEF=Rattus norvegicus Sodium channel, voltage-gated, type II, alpha polypeptide (Scn2a1), mRNA. /PROD=sodium channel, voltage-gated, type II, alphapolypeptide /FL=gb:NM_012647.1 NM_012647 sodium channel, voltage-gated, type II, alpha 1 Scn2a1 24766 NM_012647 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0019228 // regulation of action potential in neuron // inferred from direct assay /// 0019228 // regulation of action potential in neuron // traceable author statement /// 0034765 // regulation of ion transmembrane transport // not recorded /// 0042552 // myelination // inferred from expression pattern /// 0055085 // transmembrane transport // inferred from electronic annotation 0001518 // voltage-gated sodium channel complex // inferred from direct assay /// 0001518 // voltage-gated sodium channel complex // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0014704 // intercalated disc // not recorded /// 0014704 // intercalated disc // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030315 // T-tubule // not recorded /// 0030315 // T-tubule // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0033268 // node of Ranvier // inferred from direct assay /// 0043194 // initial segment // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005248 // voltage-gated sodium channel activity // inferred by curator /// 0005248 // voltage-gated sodium channel activity // inferred from direct assay /// 0005248 // voltage-gated sodium channel activity // inferred from electronic annotation /// 0005248 // voltage-gated sodium channel activity // not recorded /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031402 // sodium ion binding // inferred from direct assay /// 0043522 // leucine zipper domain binding // inferred from physical interaction 1369663_at NM_022936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022936.1 /DB_XREF=gi:12621097 /GEN=Ephx2 /FEA=FLmRNA /CNT=10 /TID=Rn.54495.1 /TIER=FL /STK=1 /UG=Rn.54495 /LL=65030 /DEF=Rattus norvegicus cytosolic epoxide hydrolase (Ephx2), mRNA. /PROD=cytosolic epoxide hydrolase /FL=gb:NM_022936.1 NM_022936 epoxide hydrolase 2, cytoplasmic Ephx2 65030 NM_022936 0002539 // prostaglandin production involved in inflammatory response // inferred from mutant phenotype /// 0006954 // inflammatory response // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0009636 // response to toxin // inferred from electronic annotation /// 0019233 // sensory perception of pain // inferred from mutant phenotype /// 0019439 // aromatic compound catabolic process // inferred from electronic annotation /// 0043651 // linoleic acid metabolic process // inferred from mutant phenotype /// 0045777 // positive regulation of blood pressure // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // traceable author statement /// 0005777 // peroxisome // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0000287 // magnesium ion binding // inferred from mutant phenotype /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003869 // 4-nitrophenylphosphatase activity // inferred from direct assay /// 0004301 // epoxide hydrolase activity // inferred from direct assay /// 0004301 // epoxide hydrolase activity // not recorded /// 0004301 // epoxide hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369664_at NM_053019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053019.1 /DB_XREF=gi:16554454 /GEN=Avpr1a /FEA=FLmRNA /CNT=9 /TID=Rn.32282.1 /TIER=FL /STK=1 /UG=Rn.32282 /LL=25107 /DEF=Rattus norvegicus Vasopressin receptor V1a (Avpr1a), mRNA. /PROD=vasopressin receptor V1a /FL=gb:NM_053019.1 NM_053019 arginine vasopressin receptor 1A Avpr1a 25107 NM_053019 0001992 // regulation of systemic arterial blood pressure by vasopressin // not recorded /// 0001992 // regulation of systemic arterial blood pressure by vasopressin // traceable author statement /// 0001992 // regulation of systemic arterial blood pressure by vasopressin // inferred from electronic annotation /// 0002125 // maternal aggressive behavior // inferred from mutant phenotype /// 0003079 // positive regulation of natriuresis // inferred from mutant phenotype /// 0003084 // positive regulation of systemic arterial blood pressure // inferred from mutant phenotype /// 0006950 // response to stress // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // non-traceable author statement /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0007621 // negative regulation of female receptivity // inferred from mutant phenotype /// 0007625 // grooming behavior // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0010033 // response to organic substance // inferred from mutant phenotype /// 0010035 // response to inorganic substance // inferred from mutant phenotype /// 0010460 // positive regulation of heart rate // inferred from mutant phenotype /// 0014049 // positive regulation of glutamate secretion // inferred from mutant phenotype /// 0014902 // myotube differentiation // inferred from expression pattern /// 0019722 // calcium-mediated signaling // inferred from mutant phenotype /// 0021537 // telencephalon development // inferred from expression pattern /// 0030146 // diuresis // non-traceable author statement /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0031394 // positive regulation of prostaglandin biosynthetic process // inferred from mutant phenotype /// 0032849 // positive regulation of cellular pH reduction // inferred from mutant phenotype /// 0035176 // social behavior // inferred from direct assay /// 0035176 // social behavior // inferred from expression pattern /// 0042631 // cellular response to water deprivation // inferred from expression pattern /// 0042711 // maternal behavior // inferred from mutant phenotype /// 0042713 // sperm ejaculation // inferred from mutant phenotype /// 0043084 // penile erection // inferred from mutant phenotype /// 0045777 // positive regulation of blood pressure // inferred from mutant phenotype /// 0045819 // positive regulation of glycogen catabolic process // non-traceable author statement /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0051459 // regulation of adrenocorticotropin secretion // non-traceable author statement /// 0051970 // negative regulation of transmission of nerve impulse // inferred from mutant phenotype 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005000 // vasopressin receptor activity // inferred from direct assay /// 0005000 // vasopressin receptor activity // inferred from mutant phenotype /// 0005000 // vasopressin receptor activity // traceable author statement /// 0005000 // vasopressin receptor activity // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred from mutant phenotype /// 0031894 // V1A vasopressin receptor binding // inferred from direct assay 1369665_a_at AJ222813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ222813.1 /DB_XREF=gi:3413501 /GEN=IL-18 /FEA=FLmRNA /CNT=8 /TID=Rn.11118.1 /TIER=FL /STK=1 /UG=Rn.11118 /LL=29197 /DEF=Rattus norvegicus mRNA for precursor interleukin 18 (IL-18), complete cds. /PROD=interleukin-18 /FL=gb:AJ222813.1 gb:AY077842.1 gb:NM_019165.1 gb:U77776.1 AJ222813 interleukin 18 Il18 29197 NM_019165 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from sequence or structural similarity /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from mutant phenotype /// 0007611 // learning or memory // traceable author statement /// 0009409 // response to cold // inferred from expression pattern /// 0030155 // regulation of cell adhesion // not recorded /// 0030155 // regulation of cell adhesion // inferred from sequence or structural similarity /// 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0030431 // sleep // inferred from direct assay /// 0030431 // sleep // traceable author statement /// 0032729 // positive regulation of interferon-gamma production // inferred from electronic annotation /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0042088 // T-helper 1 type immune response // not recorded /// 0042088 // T-helper 1 type immune response // inferred from sequence or structural similarity /// 0042088 // T-helper 1 type immune response // inferred from electronic annotation /// 0042095 // interferon-gamma biosynthetic process // inferred from electronic annotation /// 0042095 // interferon-gamma biosynthetic process // not recorded /// 0042104 // positive regulation of activated T cell proliferation // not recorded /// 0042104 // positive regulation of activated T cell proliferation // inferred from sequence or structural similarity /// 0042104 // positive regulation of activated T cell proliferation // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0045188 // regulation of circadian sleep/wake cycle, non-REM sleep // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0045515 // interleukin-18 receptor binding // traceable author statement 1369666_at BG378763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378763 /DB_XREF=gi:13303235 /DB_XREF=UI-R-CV1-bvs-e-11-0-UI.s1 /CLONE=UI-R-CV1-bvs-e-11-0-UI /FEA=FLmRNA /CNT=18 /TID=Rn.10167.1 /TIER=ConsEnd /STK=0 /UG=Rn.10167 /LL=25062 /UG_GENE=Gpd2 /UG_TITLE=Glycerol-3-phosophate dehydrogenase 2 (mitochondrial) /FL=gb:NM_012736.1 gb:U08027.1 BG378763 Glycerol-3-phosphate dehydrogenase 2, mitochondrial Gpd2 25062 NM_012736 0006072 // glycerol-3-phosphate metabolic process // inferred from direct assay /// 0006072 // glycerol-3-phosphate metabolic process // inferred from electronic annotation /// 0006072 // glycerol-3-phosphate metabolic process // not recorded /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006094 // gluconeogenesis // not recorded /// 0006734 // NADH metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0009331 // glycerol-3-phosphate dehydrogenase complex // inferred from electronic annotation 0004367 // glycerol-3-phosphate dehydrogenase [NAD+] activity // inferred from direct assay /// 0004368 // glycerol-3-phosphate dehydrogenase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1369667_at NM_033097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_033097.1 /DB_XREF=gi:14861865 /GEN=Sacm2l /FEA=FLmRNA /CNT=14 /TID=Rn.21933.1 /TIER=FL /STK=1 /UG=Rn.21933 /LL=25218 /DEF=Rattus norvegicus Suppressor of actin mutation 2-like (Sacm2l), mRNA. /PROD=suppressor of actin mutation 2-like /FL=gb:NM_033097.1 NM_033097 vacuolar protein sorting 52 homolog (S. cerevisiae) Vps52 25218 NM_033097 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1369668_x_at AW914828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW914828 /DB_XREF=gi:8080508 /DB_XREF=EST346132 /CLONE=RGIBH77 /FEA=FLmRNA /CNT=14 /TID=Rn.21933.1 /TIER=ConsEnd /STK=0 /UG=Rn.21933 /LL=25218 /UG_GENE=Sacm2l /UG_TITLE=Suppressor of actin mutation 2-like /FL=gb:NM_033097.1 AW914828 vacuolar protein sorting 52 homolog (S. cerevisiae) Vps52 25218 NM_033097 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1369669_at NM_053970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053970.1 /DB_XREF=gi:16758861 /GEN=Nln /FEA=FLmRNA /CNT=9 /TID=Rn.11029.1 /TIER=FL /STK=1 /UG=Rn.11029 /LL=117041 /DEF=Rattus norvegicus neurolysin (metallopeptidase M3 family) (Nln), mRNA. /PROD=neurolysin (metallopeptidase M3 family) /FL=gb:NM_053970.1 NM_053970 neurolysin (metallopeptidase M3 family) Nln 117041 NM_053970 0006508 // proteolysis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369670_at NM_031518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031518.1 /DB_XREF=gi:13928701 /GEN=Mox2 /FEA=FLmRNA /CNT=8 /TID=Rn.7085.1 /TIER=FL /STK=1 /UG=Rn.7085 /LL=24560 /DEF=Rattus norvegicus Cell surface protein (thymocyte, antigen identified by monoclonal antibody MRC-OX2 (Mox2), mRNA. /PROD=cell surface protein (thymocyte, antigenidentified by monoclonal antibody MRC-OX2 /FL=gb:NM_031518.1 NM_031518 Cd200 molecule Cd200 24560 NM_031518 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction 1369671_at K03040 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:K03040.1 /DB_XREF=gi:205873 /FEA=FLmRNA /CNT=8 /TID=Rn.2391.1 /TIER=FL /STK=1 /UG=Rn.2391 /LL=25611 /UG_GENE=Otc /UG_TITLE=Ornithine carbamoyltransferase /DEF=Rat (Wistar) ornithine carbamoyltransferase mRNA, complete cds. /FL=gb:K00001.1 gb:NM_013078.1 gb:K03040.1 K03040 ornithine carbamoyltransferase Otc 25611 NM_013078 0000050 // urea cycle // inferred from direct assay /// 0000050 // urea cycle // inferred from electronic annotation /// 0001889 // liver development // inferred from expression pattern /// 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006526 // arginine biosynthetic process // inferred from electronic annotation /// 0006591 // ornithine metabolic process // inferred from direct assay /// 0007494 // midgut development // inferred from expression pattern /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0010043 // response to zinc ion // inferred from expression pattern /// 0019240 // citrulline biosynthetic process // inferred from direct assay /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0055081 // anion homeostasis // inferred from direct assay /// 0070207 // protein homotrimerization // inferred from direct assay /// 0070781 // response to biotin // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0009348 // ornithine carbamoyltransferase complex // inferred from electronic annotation 0004585 // ornithine carbamoyltransferase activity // inferred from direct assay /// 0004585 // ornithine carbamoyltransferase activity // inferred from mutant phenotype /// 0004585 // ornithine carbamoyltransferase activity // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from direct assay /// 0016597 // amino acid binding // inferred from mutant phenotype /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016743 // carboxyl- or carbamoyltransferase activity // inferred from electronic annotation /// 0042301 // phosphate binding // inferred from mutant phenotype 1369672_at NM_017260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017260.1 /DB_XREF=gi:8392896 /GEN=Alox5ap /FEA=FLmRNA /CNT=8 /TID=Rn.18399.1 /TIER=FL /STK=1 /UG=Rn.18399 /LL=29624 /DEF=Rattus norvegicus Arachidonate 5-lipoxygenase activating protein (Alox5ap), mRNA. /PROD=Arachidonate 5-lipoxygenase activating protein /FL=gb:NM_017260.1 NM_017260 arachidonate 5-lipoxygenase activating protein Alox5ap 29624 NM_017260 0002540 // leukotriene production involved in inflammatory response // inferred from electronic annotation /// 0002540 // leukotriene production involved in inflammatory response // not recorded /// 0006691 // leukotriene metabolic process // inferred from electronic annotation /// 0019370 // leukotriene biosynthetic process // inferred from direct assay /// 0019370 // leukotriene biosynthetic process // not recorded /// 0019370 // leukotriene biosynthetic process // traceable author statement /// 0019370 // leukotriene biosynthetic process // inferred from electronic annotation /// 0019372 // lipoxygenase pathway // inferred from direct assay /// 0019372 // lipoxygenase pathway // traceable author statement /// 0070207 // protein homotrimerization // inferred from direct assay /// 0070207 // protein homotrimerization // not recorded /// 0070207 // protein homotrimerization // inferred from electronic annotation /// 0071277 // cellular response to calcium ion // inferred from electronic annotation /// 0071277 // cellular response to calcium ion // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005635 // nuclear envelope // inferred from direct assay /// 0005635 // nuclear envelope // not recorded /// 0005635 // nuclear envelope // inferred from sequence or structural similarity /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded /// 0031965 // nuclear membrane // inferred from sequence or structural similarity /// 0031965 // nuclear membrane // inferred from electronic annotation 0004051 // arachidonate 5-lipoxygenase activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0008047 // enzyme activator activity // inferred from expression pattern /// 0008047 // enzyme activator activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded /// 0050544 // arachidonic acid binding // not recorded /// 0050544 // arachidonic acid binding // inferred from sequence or structural similarity /// 0050544 // arachidonic acid binding // inferred from electronic annotation 1369673_at NM_080780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080780.1 /DB_XREF=gi:18158446 /GEN=P2rx5 /FEA=FLmRNA /CNT=7 /TID=Rn.10257.1 /TIER=FL /STK=1 /UG=Rn.10257 /LL=113995 /DEF=Rattus norvegicus purinergic receptor P2X, ligand-gated ion channel, 5 (P2rx5), mRNA. /PROD=purinergic receptor P2X, ligand-gated ionchannel, 5 /FL=gb:NM_080780.1 NM_080780 purinergic receptor P2X, ligand-gated ion channel, 5 P2rx5 113995 NM_080780 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006812 // cation transport // traceable author statement /// 0019228 // regulation of action potential in neuron // inferred from direct assay /// 0034220 // ion transmembrane transport // not recorded /// 0043416 // regulation of skeletal muscle tissue regeneration // inferred from mutant phenotype /// 0048630 // skeletal muscle tissue growth // traceable author statement /// 0051260 // protein homooligomerization // inferred from direct assay 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004931 // extracellular ATP-gated cation channel activity // inferred from direct assay /// 0004931 // extracellular ATP-gated cation channel activity // not recorded /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0008144 // drug binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from direct assay 1369674_at X92069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X92069.1 /DB_XREF=gi:1279658 /GEN=P2X5 /FEA=FLmRNA /CNT=7 /TID=Rn.10257.1 /TIER=ConsEnd /STK=0 /UG=Rn.10257 /LL=113995 /UG_TITLE=purinergic receptor P2X, ligand-gated ion channel, 5 /DEF=R.norvegicus mRNA for P2X5 protein. /FL=gb:NM_080780.1 X92069 purinergic receptor P2X, ligand-gated ion channel, 5 P2rx5 113995 NM_080780 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006812 // cation transport // traceable author statement /// 0019228 // regulation of action potential in neuron // inferred from direct assay /// 0034220 // ion transmembrane transport // not recorded /// 0043416 // regulation of skeletal muscle tissue regeneration // inferred from mutant phenotype /// 0048630 // skeletal muscle tissue growth // traceable author statement /// 0051260 // protein homooligomerization // inferred from direct assay 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004931 // extracellular ATP-gated cation channel activity // inferred from direct assay /// 0004931 // extracellular ATP-gated cation channel activity // not recorded /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0008144 // drug binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from direct assay 1369675_at AF329470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF329470.2 /DB_XREF=gi:13752805 /FEA=FLmRNA /CNT=11 /TID=Rn.10477.1 /TIER=FL /STK=1 /UG=Rn.10477 /LL=81678 /UG_GENE=Itpr2 /DEF=Rattus norvegicus IP3 receptor isoform 2 mRNA, complete cds. /PROD=IP3 receptor isoform 2 /FL=gb:AF329470.2 gb:NM_031046.1 AF329470 inositol 1,4,5-triphosphate receptor, type 2 Itpr2 81678 NM_031046 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0007165 // signal transduction // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // not recorded 0001950 // plasma membrane enriched fraction // inferred from electronic annotation /// 0001950 // plasma membrane enriched fraction // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // not recorded /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0031095 // platelet dense tubular network membrane // not recorded /// 0033017 // sarcoplasmic reticulum membrane // inferred from electronic annotation /// 0033017 // sarcoplasmic reticulum membrane // not recorded /// 0043209 // myelin sheath // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005220 // inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0008095 // inositol-1,4,5-trisphosphate receptor activity // not recorded /// 0008095 // inositol-1,4,5-trisphosphate receptor activity // inferred from electronic annotation /// 0015278 // calcium-release channel activity // not recorded /// 0015278 // calcium-release channel activity // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // not recorded 1369676_at X61677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X61677.1 /DB_XREF=gi:56507 /GEN=ITPR2 /FEA=FLmRNA /CNT=11 /TID=Rn.10477.1 /TIER=ConsEnd /STK=0 /UG=Rn.10477 /LL=81678 /DEF=Rat ITPR2 gene for type 2 inositol triphosphate receptor. /PROD=inositol triphosphate receptor type 2 /FL=gb:AF329470.2 gb:NM_031046.1 X61677 inositol 1,4,5-triphosphate receptor, type 2 Itpr2 81678 NM_031046 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0007165 // signal transduction // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // not recorded 0001950 // plasma membrane enriched fraction // inferred from electronic annotation /// 0001950 // plasma membrane enriched fraction // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // not recorded /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0031095 // platelet dense tubular network membrane // not recorded /// 0033017 // sarcoplasmic reticulum membrane // inferred from electronic annotation /// 0033017 // sarcoplasmic reticulum membrane // not recorded /// 0043209 // myelin sheath // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005220 // inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0008095 // inositol-1,4,5-trisphosphate receptor activity // not recorded /// 0008095 // inositol-1,4,5-trisphosphate receptor activity // inferred from electronic annotation /// 0015278 // calcium-release channel activity // not recorded /// 0015278 // calcium-release channel activity // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // not recorded 1369677_at X55812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X55812.1 /DB_XREF=gi:1552375 /GEN=SKR6 /FEA=FLmRNA /CNT=11 /TID=Rn.10579.1 /TIER=ConsEnd /STK=4 /UG=Rn.10579 /LL=25248 /DEF=Rat mRNA for SKR6 gene, a CB1 cannabinoid receptor. /PROD=CB1 cannabinoid receptor /FL=gb:U40395.1 gb:NM_012784.1 X55812 cannabinoid receptor 1 (brain) Cnr1 25248 NM_012784 0002866 // positive regulation of acute inflammatory response to antigenic stimulus // inferred from mutant phenotype /// 0006950 // response to stress // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0007568 // aging // inferred from mutant phenotype /// 0007584 // response to nutrient // inferred from expression pattern /// 0007610 // behavior // inferred from direct assay /// 0007611 // learning or memory // inferred from mutant phenotype /// 0007613 // memory // inferred from direct assay /// 0010976 // positive regulation of neuron projection development // inferred from direct assay /// 0019216 // regulation of lipid metabolic process // inferred from mutant phenotype /// 0019233 // sensory perception of pain // inferred from mutant phenotype /// 0031622 // positive regulation of fever // inferred from mutant phenotype /// 0031999 // negative regulation of fatty acid beta-oxidation // inferred from mutant phenotype /// 0032228 // regulation of synaptic transmission, GABAergic // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from mutant phenotype /// 0033004 // negative regulation of mast cell activation // inferred from direct assay /// 0033602 // negative regulation of dopamine secretion // inferred from mutant phenotype /// 0035094 // response to nicotine // inferred from mutant phenotype /// 0042220 // response to cocaine // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043271 // negative regulation of ion transport // inferred from direct assay /// 0043278 // response to morphine // inferred from mutant phenotype /// 0045471 // response to ethanol // inferred from mutant phenotype /// 0045759 // negative regulation of action potential // inferred from mutant phenotype /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0045777 // positive regulation of blood pressure // inferred from mutant phenotype /// 0050796 // regulation of insulin secretion // inferred from mutant phenotype /// 0051001 // negative regulation of nitric-oxide synthase activity // inferred from mutant phenotype /// 0051966 // regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype /// 0060135 // maternal process involved in female pregnancy // inferred from expression pattern /// 0060259 // regulation of feeding behavior // inferred from mutant phenotype /// 0060405 // regulation of penile erection // inferred from mutant phenotype 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004949 // cannabinoid receptor activity // inferred from mutant phenotype /// 0004949 // cannabinoid receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008144 // drug binding // inferred from mutant phenotype 1369678_a_at D78017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D78017.1 /DB_XREF=gi:1041031 /GEN=NFI-A /FEA=FLmRNA /CNT=7 /TID=Rn.10550.1 /TIER=FL /STK=1 /UG=Rn.10550 /LL=25492 /DEF=Rat mRNA for NFI-A1, complete cds. /PROD=NFI-A1 /FL=gb:NM_012988.1 gb:AB060652.1 gb:D78017.1 D78017 nuclear factor I/A Nfia 25492 NM_012988 0006260 // DNA replication // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded 1369679_a_at AB060652 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB060652.1 /DB_XREF=gi:13785513 /GEN=NF1-A1 /FEA=FLmRNA /CNT=7 /TID=Rn.10550.1 /TIER=FL /STK=1 /UG=Rn.10550 /LL=25492 /DEF=Rattus norvegicus mRNA for transcription factor NF1-A1, complete cds. /PROD=transcription factor NF1-A1 /FL=gb:NM_012988.1 gb:AB060652.1 gb:D78017.1 AB060652 nuclear factor I/A Nfia 25492 NM_012988 0006260 // DNA replication // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded 1369680_at NM_133611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133611.1 /DB_XREF=gi:19424325 /GEN=Slc2a13 /FEA=FLmRNA /CNT=7 /TID=Rn.21287.1 /TIER=FL /STK=1 /UG=Rn.21287 /DEF=Rattus norvegicus solute carrier family 2 (facilitated glucose transporter), member 13 (Slc2a13), mRNA. /PROD=solute carrier family 2 (facilitated glucosetransporter), member 13 /FL=gb:NM_133611.1 NM_133611 solute carrier family 2 (facilitated glucose transporter), member 13 Slc2a13 171147 NM_133611 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005366 // myo-inositol:hydrogen symporter activity // not recorded /// 0022891 // substrate-specific transmembrane transporter activity // inferred from electronic annotation 1369681_at NM_017339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017339.1 /DB_XREF=gi:8393632 /GEN=Isl-1 /FEA=FLmRNA /CNT=7 /TID=Rn.15879.1 /TIER=FL /STK=1 /UG=Rn.15879 /DEF=Rattus norvegicus isl-1=homeobox (Isl-1), mRNA. /PROD=isl-1=homeobox /FL=gb:NM_017339.1 NM_017339 ISL LIM homeobox 1 Isl1 64444 NM_017339 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0021522 // spinal cord motor neuron differentiation // not recorded /// 0021522 // spinal cord motor neuron differentiation // inferred from electronic annotation /// 0021524 // visceral motor neuron differentiation // inferred from electronic annotation /// 0021524 // visceral motor neuron differentiation // not recorded /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0021983 // pituitary gland development // not recorded /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0031016 // pancreas development // inferred from electronic annotation /// 0031016 // pancreas development // not recorded /// 0031103 // axon regeneration // inferred from expression pattern /// 0031290 // retinal ganglion cell axon guidance // inferred from electronic annotation /// 0031290 // retinal ganglion cell axon guidance // not recorded /// 0032024 // positive regulation of insulin secretion // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0048762 // mesenchymal cell differentiation // inferred from electronic annotation /// 0048762 // mesenchymal cell differentiation // not recorded 0005622 // intracellular // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0044424 // intracellular part // inferred from electronic annotation /// 0044424 // intracellular part // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from mutant phenotype /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369682_at NM_013103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013103.1 /DB_XREF=gi:6981639 /GEN=Tcf2 /FEA=FLmRNA /CNT=6 /TID=Rn.11342.1 /TIER=FL /STK=1 /UG=Rn.11342 /LL=25640 /DEF=Rattus norvegicus Transcription factor 2, hepatic; LF-B3; variant hepatic nuclear factor (Tcf2), mRNA. /PROD=transcription factor 2, hepatic; LF-B3; varianthepatic nuclear factor /FL=gb:NM_013103.1 NM_013103 HNF1 homeobox B Hnf1b 25640 NM_013103 0001714 // endodermal cell fate specification // not recorded /// 0001822 // kidney development // not recorded /// 0001822 // kidney development // inferred from sequence or structural similarity /// 0001826 // inner cell mass cell differentiation // not recorded /// 0001889 // liver development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007492 // endoderm development // not recorded /// 0009743 // response to carbohydrate stimulus // inferred from expression pattern /// 0009749 // response to glucose stimulus // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010628 // positive regulation of gene expression // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030073 // insulin secretion // not recorded /// 0030111 // regulation of Wnt receptor signaling pathway // not recorded /// 0030902 // hindbrain development // not recorded /// 0031018 // endocrine pancreas development // not recorded /// 0031018 // endocrine pancreas development // inferred from sequence or structural similarity /// 0032922 // circadian regulation of gene expression // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0042663 // regulation of endodermal cell fate specification // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048557 // embryonic digestive tract morphogenesis // not recorded /// 0048754 // branching morphogenesis of a tube // not recorded /// 0048806 // genitalia development // not recorded /// 0048806 // genitalia development // inferred from sequence or structural similarity /// 0050673 // epithelial cell proliferation // not recorded /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0060429 // epithelium development // not recorded /// 0060677 // ureteric bud elongation // not recorded /// 0061017 // hepatoblast differentiation // not recorded /// 0065004 // protein-DNA complex assembly // inferred from mutant phenotype /// 0070365 // hepatocyte differentiation // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // not recorded /// 0072095 // regulation of branch elongation involved in ureteric bud branching // not recorded /// 0072164 // mesonephric tubule development // not recorded /// 0072176 // nephric duct development // not recorded /// 0072177 // mesonephric duct development // not recorded /// 0072179 // nephric duct formation // not recorded /// 0072181 // mesonephric duct formation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // inferred from direct assay /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from direct assay /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // not recorded 1369683_at AF136282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF136282.1 /DB_XREF=gi:7381174 /GEN=BID /FEA=FLmRNA /CNT=6 /TID=Rn.48798.1 /TIER=FL /STK=1 /UG=Rn.48798 /LL=64625 /DEF=Rattus norvegicus apoptotic death agonist BID (BID) mRNA, complete cds. /PROD=apoptotic death agonist BID /FL=gb:AF259503.1 gb:NM_022684.1 gb:AF136282.1 AF136282 BH3 interacting domain death agonist Bid 64625 NM_022684 0001836 // release of cytochrome c from mitochondria // inferred from direct assay /// 0001836 // release of cytochrome c from mitochondria // not recorded /// 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0006626 // protein targeting to mitochondrion // inferred from electronic annotation /// 0006626 // protein targeting to mitochondrion // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0034349 // glial cell apoptosis // inferred from expression pattern /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0046902 // regulation of mitochondrial membrane permeability // inferred from electronic annotation /// 0046902 // regulation of mitochondrial membrane permeability // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded 1369684_at NM_133524 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133524.1 /DB_XREF=gi:19424171 /GEN=Tcfe2a /FEA=FLmRNA /CNT=11 /TID=Rn.10290.1 /TIER=FL /STK=1 /UG=Rn.10290 /LL=171046 /DEF=Rattus norvegicus transcription factor E2a (Tcfe2a), mRNA. /PROD=transcription factor E2a /FL=gb:NM_133524.1 NM_133524 transcription factor E2a-like /// transcription factor E2a LOC100364490 /// Tcfe2a 100364490 /// 171046 NM_001035237 /// NM_133524 /// XM_002726865 0000080 // G1 phase of mitotic cell cycle // not recorded /// 0000080 // G1 phase of mitotic cell cycle // inferred from sequence or structural similarity /// 0002326 // B cell lineage commitment // inferred from electronic annotation /// 0002326 // B cell lineage commitment // not recorded /// 0002326 // B cell lineage commitment // inferred from sequence or structural similarity /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0030890 // positive regulation of B cell proliferation // not recorded /// 0030890 // positive regulation of B cell proliferation // inferred from sequence or structural similarity /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0033152 // immunoglobulin V(D)J recombination // inferred from electronic annotation /// 0033152 // immunoglobulin V(D)J recombination // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0043966 // histone H3 acetylation // not recorded /// 0043967 // histone H4 acetylation // inferred from electronic annotation /// 0043967 // histone H4 acetylation // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045787 // positive regulation of cell cycle // not recorded /// 0045787 // positive regulation of cell cycle // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0050821 // protein stabilization // inferred from electronic annotation /// 0050821 // protein stabilization // not recorded 0000788 // nuclear nucleosome // inferred from electronic annotation /// 0000788 // nuclear nucleosome // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005667 // transcription factor complex // inferred from sequence or structural similarity /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from sequence or structural similarity 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from sequence or structural similarity /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0042802 // identical protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0043425 // bHLH transcription factor binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0046983 // protein dimerization activity // not recorded /// 0070644 // vitamin D response element binding // not recorded /// 0070888 // E-box binding // not recorded 1369685_at NM_021691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021691.1 /DB_XREF=gi:11067420 /GEN=Dermo1 /FEA=FLmRNA /CNT=11 /TID=Rn.16279.1 /TIER=FL /STK=1 /UG=Rn.16279 /LL=59327 /DEF=Rattus norvegicus dermo-1 protein (Dermo1), mRNA. /PROD=dermo-1 protein /FL=gb:NM_021691.1 NM_021691 twist homolog 2 (Drosophila) Twist2 59327 NM_021691 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006916 // anti-apoptosis // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045668 // negative regulation of osteoblast differentiation // not recorded /// 0045668 // negative regulation of osteoblast differentiation // inferred from sequence or structural similarity /// 0045668 // negative regulation of osteoblast differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1369686_at U78857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U78857.1 /DB_XREF=gi:2062398 /GEN=cpg16 /FEA=FLmRNA /CNT=10 /TID=Rn.80575.1 /TIER=FL /STK=1 /UG=Rn.80575 /LL=83825 /DEF=Rattus norvegicus protein serinethreonine kinase CPG16 (cpg16) mRNA, complete cds. /PROD=protein serinethreonine kinase CPG16 /FL=gb:U78857.1 gb:NM_053343.1 U78857 doublecortin-like kinase 1 Dclk1 83825 NM_021584 /// NM_053343 0001764 // neuron migration // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007420 // brain development // not recorded /// 0009615 // response to virus // not recorded /// 0021952 // central nervous system projection neuron axonogenesis // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0048675 // axon extension // not recorded /// 0048813 // dendrite morphogenesis // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1369687_at NM_031652 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031652.1 /DB_XREF=gi:13928901 /GEN=Kcnab3 /FEA=FLmRNA /CNT=9 /TID=Rn.11260.1 /TIER=FL /STK=1 /UG=Rn.11260 /LL=58981 /DEF=Rattus norvegicus potassium voltage gated channel, shaker related subfamily, beta member 3 (Kcnab3), mRNA. /PROD=potassium voltage gated channel, shaker relatedsubfamily, beta member 3 /FL=gb:NM_031652.1 NM_031652 potassium voltage-gated channel, shaker-related subfamily, beta member 3 Kcnab3 58981 NM_031652 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1369688_s_at U69109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U69109.1 /DB_XREF=gi:1654376 /FEA=FLmRNA /CNT=8 /TID=Rn.11025.1 /TIER=FL /STK=1 /UG=Rn.11025 /LL=50646 /UG_GENE=CAKbeta /DEF=Rattus norvegicus calcium-dependent tyrosine kinase mRNA, complete cds. /PROD=calcium-dependent tyrosine kinase /FL=gb:NM_017318.1 gb:U69109.1 gb:D45854.1 U69109 PTK2B protein tyrosine kinase 2 beta Ptk2b 50646 NM_017318 0000165 // MAPKKK cascade // inferred from mutant phenotype /// 0000302 // response to reactive oxygen species // inferred from expression pattern /// 0001525 // angiogenesis // inferred from mutant phenotype /// 0001556 // oocyte maturation // inferred from mutant phenotype /// 0001666 // response to hypoxia // inferred from expression pattern /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006800 // oxygen and reactive oxygen species metabolic process // inferred from mutant phenotype /// 0006950 // response to stress // inferred from expression pattern /// 0006970 // response to osmotic stress // inferred from expression pattern /// 0007015 // actin filament organization // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from mutant phenotype /// 0007172 // signal complex assembly // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from mutant phenotype /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010226 // response to lithium ion // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014009 // glial cell proliferation // inferred from expression pattern /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0030154 // cell differentiation // inferred from expression pattern /// 0030279 // negative regulation of ossification // inferred from mutant phenotype /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0032863 // activation of Rac GTPase activity // inferred from mutant phenotype /// 0042220 // response to cocaine // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from physical interaction /// 0042976 // activation of Janus kinase activity // inferred from mutant phenotype /// 0043149 // stress fiber assembly // inferred from mutant phenotype /// 0043507 // positive regulation of JUN kinase activity // inferred from mutant phenotype /// 0043534 // blood vessel endothelial cell migration // inferred from mutant phenotype /// 0045471 // response to ethanol // inferred from expression pattern /// 0045727 // positive regulation of translation // inferred from mutant phenotype /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0048041 // focal adhesion assembly // inferred from mutant phenotype /// 0051591 // response to cAMP // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005938 // cell cortex // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0043423 // 3-phosphoinositide-dependent protein kinase binding // inferred from direct assay 1369689_at AF142097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF142097.1 /DB_XREF=gi:5081656 /GEN=ERG1 /FEA=FLmRNA /CNT=8 /TID=Rn.43028.1 /TIER=FL /STK=1 /UG=Rn.43028 /LL=60355 /DEF=Rattus norvegicus N-ethylmaleimide sensitive factor (ERG1) mRNA, complete cds. /PROD=N-ethylmaleimide sensitive factor /FL=gb:NM_021748.1 gb:AF142097.1 gb:AF189019.1 AF142097 N-ethylmaleimide-sensitive factor Nsf 60355 NM_021748 0006200 // ATP catabolic process // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // not recorded /// 0006906 // vesicle fusion // traceable author statement /// 0006944 // cellular membrane fusion // traceable author statement /// 0007269 // neurotransmitter secretion // traceable author statement /// 0015031 // protein transport // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from mutant phenotype /// 0017157 // regulation of exocytosis // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005795 // Golgi stack // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0014069 // postsynaptic density // traceable author statement /// 0043198 // dendritic shaft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004176 // ATP-dependent peptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0016887 // ATPase activity // not recorded /// 0016887 // ATPase activity // traceable author statement /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from direct assay /// 0019905 // syntaxin binding // inferred from electronic annotation /// 0019905 // syntaxin binding // not recorded /// 0042623 // ATPase activity, coupled // not recorded /// 0042623 // ATPase activity, coupled // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369690_at AI547471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547471 /DB_XREF=gi:4464959 /DB_XREF=UI-R-C3-sl-c-12-0-UI.s1 /CLONE=UI-R-C3-sl-c-12-0-UI /FEA=FLmRNA /CNT=8 /TID=Rn.43028.1 /TIER=ConsEnd /STK=0 /UG=Rn.43028 /LL=60355 /UG_GENE=Nsf /UG_TITLE=N-ethylmaleimide sensitive factor /FL=gb:NM_021748.1 gb:AF142097.1 gb:AF189019.1 AI547471 N-ethylmaleimide-sensitive factor Nsf 60355 NM_021748 0006200 // ATP catabolic process // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // not recorded /// 0006906 // vesicle fusion // traceable author statement /// 0006944 // cellular membrane fusion // traceable author statement /// 0007269 // neurotransmitter secretion // traceable author statement /// 0015031 // protein transport // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from mutant phenotype /// 0017157 // regulation of exocytosis // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005795 // Golgi stack // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0014069 // postsynaptic density // traceable author statement /// 0043198 // dendritic shaft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004176 // ATP-dependent peptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0016887 // ATPase activity // not recorded /// 0016887 // ATPase activity // traceable author statement /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from direct assay /// 0019905 // syntaxin binding // inferred from electronic annotation /// 0019905 // syntaxin binding // not recorded /// 0042623 // ATPase activity, coupled // not recorded /// 0042623 // ATPase activity, coupled // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369691_at NM_013119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013119.1 /DB_XREF=gi:6981509 /GEN=Scn3a /FEA=FLmRNA /CNT=7 /TID=Rn.25839.1 /TIER=FL /STK=1 /UG=Rn.25839 /LL=25657 /DEF=Rattus norvegicus Sodium channel, voltage-gated, type III, alpha polypeptide (Scn3a), mRNA. /PROD=sodium channel, voltage-gated, type III, alphapolypeptide /FL=gb:NM_013119.1 NM_013119 sodium channel, voltage-gated, type III, alpha Scn3a 497770 NM_013119 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0007399 // nervous system development // inferred from expression pattern /// 0009611 // response to wounding // inferred from expression pattern /// 0019228 // regulation of action potential in neuron // inferred from direct assay /// 0019233 // sensory perception of pain // inferred from mutant phenotype /// 0046684 // response to pyrethroid // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0071236 // cellular response to antibiotic // inferred from direct assay 0001518 // voltage-gated sodium channel complex // inferred from direct assay /// 0001518 // voltage-gated sodium channel complex // traceable author statement /// 0001518 // voltage-gated sodium channel complex // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005248 // voltage-gated sodium channel activity // inferred from direct assay /// 0005248 // voltage-gated sodium channel activity // traceable author statement /// 0005248 // voltage-gated sodium channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from direct assay /// 0031402 // sodium ion binding // inferred from direct assay 1369692_at NM_013045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013045.1 /DB_XREF=gi:6981667 /GEN=Tnr /FEA=FLmRNA /CNT=7 /TID=Rn.11028.1 /TIER=FL /STK=1 /UG=Rn.11028 /LL=25567 /DEF=Rattus norvegicus Tenascin-R (Restrictin, janusin, J1-160180) (Tnr), mRNA. /PROD=tenascin-R (Restrictin, janusin, J1-160180) /FL=gb:NM_013045.1 NM_013045 tenascin R Tnr 25567 NM_013045 0007155 // cell adhesion // inferred from electronic annotation /// 0007162 // negative regulation of cell adhesion // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007399 // nervous system development // traceable author statement /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from direct assay /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded 0005102 // receptor binding // inferred from electronic annotation /// 0005178 // integrin binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction 1369693_a_at NM_017215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017215.1 /DB_XREF=gi:8394285 /GEN=Slc1a2 /FEA=FLmRNA /CNT=7 /TID=Rn.10240.1 /TIER=FL /STK=1 /UG=Rn.10240 /LL=29482 /DEF=Rattus norvegicus solute carrier family 1, member 2 (Slc1a2), mRNA. /PROD=solute carrier family 1, member 2 /FL=gb:NM_017215.1 gb:AF297648.1 NM_017215 solute carrier family 1 (glial high affinity glutamate transporter), member 2 Slc1a2 29482 NM_001035233 /// NM_017215 0003333 // amino acid transmembrane transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006835 // dicarboxylic acid transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007632 // visual behavior // inferred from electronic annotation /// 0007632 // visual behavior // not recorded /// 0009416 // response to light stimulus // not recorded /// 0009416 // response to light stimulus // inferred from electronic annotation /// 0009611 // response to wounding // inferred from electronic annotation /// 0009611 // response to wounding // not recorded /// 0010259 // multicellular organismal aging // inferred from electronic annotation /// 0010259 // multicellular organismal aging // not recorded /// 0015807 // L-amino acid transport // not recorded /// 0015813 // L-glutamate transport // inferred from mutant phenotype /// 0015813 // L-glutamate transport // not recorded /// 0015813 // L-glutamate transport // inferred from electronic annotation /// 0021537 // telencephalon development // inferred from electronic annotation /// 0021537 // telencephalon development // not recorded /// 0030534 // adult behavior // inferred from electronic annotation /// 0030534 // adult behavior // not recorded /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0031668 // cellular response to extracellular stimulus // not recorded /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0043200 // response to amino acid stimulus // inferred from electronic annotation /// 0043200 // response to amino acid stimulus // not recorded /// 0046326 // positive regulation of glucose import // inferred from electronic annotation /// 0046326 // positive regulation of glucose import // not recorded /// 0051938 // L-glutamate import // inferred from electronic annotation /// 0051938 // L-glutamate import // not recorded /// 0070779 // D-aspartate import // inferred from electronic annotation /// 0070779 // D-aspartate import // not recorded /// 0071436 // sodium ion export // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0030673 // axolemma // inferred from electronic annotation /// 0030673 // axolemma // not recorded /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0005314 // high-affinity glutamate transmembrane transporter activity // inferred from mutant phenotype /// 0005314 // high-affinity glutamate transmembrane transporter activity // traceable author statement /// 0015293 // symporter activity // inferred from electronic annotation /// 0015501 // glutamate:sodium symporter activity // inferred from electronic annotation /// 0015501 // glutamate:sodium symporter activity // not recorded /// 0017153 // sodium:dicarboxylate symporter activity // inferred from electronic annotation 1369694_at AY069978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY069978.1 /DB_XREF=gi:19071567 /FEA=FLmRNA /CNT=7 /TID=Rn.10240.1 /TIER=ConsEnd /STK=0 /UG=Rn.10240 /LL=29482 /UG_GENE=Slc1a2 /DEF=Rattus norvegicus glutamate transporter splice variant GLT1a mRNA, partial cds; alternatively spliced. /PROD=glutamate transporter splice variant GLT1a /FL=gb:NM_017215.1 gb:AF297648.1 AY069978 solute carrier family 1 (glial high affinity glutamate transporter), member 2 Slc1a2 29482 NM_001035233 /// NM_017215 0003333 // amino acid transmembrane transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006835 // dicarboxylic acid transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007632 // visual behavior // inferred from electronic annotation /// 0007632 // visual behavior // not recorded /// 0009416 // response to light stimulus // not recorded /// 0009416 // response to light stimulus // inferred from electronic annotation /// 0009611 // response to wounding // inferred from electronic annotation /// 0009611 // response to wounding // not recorded /// 0010259 // multicellular organismal aging // inferred from electronic annotation /// 0010259 // multicellular organismal aging // not recorded /// 0015807 // L-amino acid transport // not recorded /// 0015813 // L-glutamate transport // inferred from mutant phenotype /// 0015813 // L-glutamate transport // not recorded /// 0015813 // L-glutamate transport // inferred from electronic annotation /// 0021537 // telencephalon development // inferred from electronic annotation /// 0021537 // telencephalon development // not recorded /// 0030534 // adult behavior // inferred from electronic annotation /// 0030534 // adult behavior // not recorded /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0031668 // cellular response to extracellular stimulus // not recorded /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0043200 // response to amino acid stimulus // inferred from electronic annotation /// 0043200 // response to amino acid stimulus // not recorded /// 0046326 // positive regulation of glucose import // inferred from electronic annotation /// 0046326 // positive regulation of glucose import // not recorded /// 0051938 // L-glutamate import // inferred from electronic annotation /// 0051938 // L-glutamate import // not recorded /// 0070779 // D-aspartate import // inferred from electronic annotation /// 0070779 // D-aspartate import // not recorded /// 0071436 // sodium ion export // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0030673 // axolemma // inferred from electronic annotation /// 0030673 // axolemma // not recorded /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0005314 // high-affinity glutamate transmembrane transporter activity // inferred from mutant phenotype /// 0005314 // high-affinity glutamate transmembrane transporter activity // traceable author statement /// 0015293 // symporter activity // inferred from electronic annotation /// 0015501 // glutamate:sodium symporter activity // inferred from electronic annotation /// 0015501 // glutamate:sodium symporter activity // not recorded /// 0017153 // sodium:dicarboxylate symporter activity // inferred from electronic annotation 1369695_at NM_031534 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031534.1 /DB_XREF=gi:13928719 /GEN=Wt1 /FEA=FLmRNA /CNT=7 /TID=Rn.37945.1 /TIER=FL /STK=1 /UG=Rn.37945 /LL=24883 /DEF=Rattus norvegicus Wilms tumor 1 (Wt1), mRNA. /PROD=wilms tumor 1 /FL=gb:NM_031534.1 NM_031534 Wilms tumor 1 Wt1 24883 NM_031534 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001656 // metanephros development // inferred from electronic annotation /// 0001656 // metanephros development // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001822 // kidney development // not recorded /// 0001822 // kidney development // inferred from electronic annotation /// 0001823 // mesonephros development // inferred from electronic annotation /// 0001823 // mesonephros development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0007281 // germ cell development // inferred from electronic annotation /// 0007281 // germ cell development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007530 // sex determination // inferred from electronic annotation /// 0007530 // sex determination // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0008584 // male gonad development // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0009888 // tissue development // inferred from electronic annotation /// 0009888 // tissue development // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0017148 // negative regulation of translation // not recorded /// 0030308 // negative regulation of cell growth // not recorded /// 0030308 // negative regulation of cell growth // inferred from sequence or structural similarity /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030325 // adrenal gland development // inferred from electronic annotation /// 0030325 // adrenal gland development // not recorded /// 0030539 // male genitalia development // inferred from electronic annotation /// 0030539 // male genitalia development // not recorded /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0032582 // negative regulation of gene-specific transcription // inferred from sequence or structural similarity /// 0032582 // negative regulation of gene-specific transcription // inferred from electronic annotation /// 0032835 // glomerulus development // not recorded /// 0032835 // glomerulus development // inferred from electronic annotation /// 0032836 // glomerular basement membrane development // not recorded /// 0032836 // glomerular basement membrane development // inferred from sequence or structural similarity /// 0032836 // glomerular basement membrane development // inferred from electronic annotation /// 0043010 // camera-type eye development // inferred from electronic annotation /// 0043010 // camera-type eye development // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from sequence or structural similarity /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0060231 // mesenchymal to epithelial transition // inferred from electronic annotation /// 0060231 // mesenchymal to epithelial transition // not recorded /// 0061032 // visceral serous pericardium development // not recorded /// 0072112 // glomerular visceral epithelial cell differentiation // not recorded /// 0072284 // metanephric S-shaped body morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016607 // nuclear speck // not recorded /// 0016607 // nuclear speck // inferred from sequence or structural similarity /// 0016607 // nuclear speck // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from sequence or structural similarity /// 0010843 // promoter binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // not recorded /// 0016566 // specific transcriptional repressor activity // inferred from sequence or structural similarity /// 0016566 // specific transcriptional repressor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070742 // C2H2 zinc finger domain binding // not recorded /// 0070742 // C2H2 zinc finger domain binding // inferred from sequence or structural similarity /// 0070742 // C2H2 zinc finger domain binding // inferred from electronic annotation 1369696_at NM_053972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053972.1 /DB_XREF=gi:16758865 /GEN=Ragb /FEA=FLmRNA /CNT=6 /TID=Rn.11259.1 /TIER=FL /STK=1 /UG=Rn.11259 /LL=117043 /DEF=Rattus norvegicus GTP-binding protein ragB (Ragb), mRNA. /PROD=GTP-binding protein ragB /FL=gb:NM_053972.1 NM_053972 Ras-related GTP binding B RragB 117043 NM_053972 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0005525 // GTP binding // inferred from electronic annotation 1369697_at NM_017183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017183.1 /DB_XREF=gi:8393599 /GEN=Il8rb /FEA=FLmRNA /CNT=6 /TID=Rn.42916.1 /TIER=FL /STK=1 /UG=Rn.42916 /LL=29385 /DEF=Rattus norvegicus Interleukin 8 receptor beta (Il8rb), mRNA. /PROD=Interleukin 8 receptor beta /FL=gb:NM_017183.1 NM_017183 interleukin 8 receptor, beta Il8rb 29385 NM_017183 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006935 // chemotaxis // not recorded /// 0006968 // cellular defense response // inferred from electronic annotation /// 0006968 // cellular defense response // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0030593 // neutrophil chemotaxis // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // not recorded /// 0042119 // neutrophil activation // inferred from electronic annotation /// 0042119 // neutrophil activation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042629 // mast cell granule // inferred from electronic annotation /// 0042629 // mast cell granule // not recorded 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004918 // interleukin-8 receptor activity // inferred from electronic annotation /// 0004918 // interleukin-8 receptor activity // not recorded /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004950 // chemokine receptor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016494 // C-X-C chemokine receptor activity // not recorded /// 0016494 // C-X-C chemokine receptor activity // inferred from electronic annotation /// 0019959 // interleukin-8 binding // not recorded /// 0019959 // interleukin-8 binding // inferred from electronic annotation 1369698_at AF072816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF072816.1 /DB_XREF=gi:3283976 /GEN=mrp3 /FEA=FLmRNA /CNT=5 /TID=Rn.29977.1 /TIER=FL /STK=1 /UG=Rn.29977 /LL=140668 /DEF=Rattus norvegicus ABC-type transporter MRP3 (mrp3) mRNA, complete cds. /PROD=ABC-type transporter MRP3 /FL=gb:AF072816.1 gb:AB010467.1 gb:NM_080581.1 AF072816 ATP-binding cassette, sub-family C (CFTR/MRP), member 3 Abcc3 140668 NM_080581 0006810 // transport // inferred from electronic annotation /// 0006855 // drug transmembrane transport // inferred from mutant phenotype /// 0010033 // response to organic substance // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0015722 // canalicular bile acid transport // inferred from direct assay /// 0015893 // drug transport // inferred from mutant phenotype /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0055085 // transmembrane transport // inferred from electronic annotation 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008559 // xenobiotic-transporting ATPase activity // inferred from mutant phenotype /// 0015238 // drug transmembrane transporter activity // inferred from mutant phenotype /// 0015432 // bile acid-exporting ATPase activity // inferred from mutant phenotype /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from direct assay /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 1369699_at NM_012728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012728.1 /DB_XREF=gi:7110604 /GEN=Glp1r /FEA=FLmRNA /CNT=5 /TID=Rn.11408.1 /TIER=FL /STK=1 /UG=Rn.11408 /LL=25051 /DEF=Rattus norvegicus Pancreatic beta cell receptor for the gluco-incretin hormone glucagon-like peptide 1 (Glp1r), mRNA. /PROD=pancreatic beta cell receptor for thegluco-incretin hormone glucagon-like peptide 1 /FL=gb:NM_012728.1 NM_012728 glucagon-like peptide 1 receptor Glp1r 25051 NM_012728 0006950 // response to stress // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from mutant phenotype /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007218 // neuropeptide signaling pathway // traceable author statement /// 0007611 // learning or memory // inferred from mutant phenotype /// 0007611 // learning or memory // not recorded /// 0007613 // memory // inferred from direct assay /// 0007631 // feeding behavior // inferred from mutant phenotype /// 0008016 // regulation of heart contraction // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008306 // associative learning // inferred from direct assay /// 0009749 // response to glucose stimulus // inferred from mutant phenotype /// 0019933 // cAMP-mediated signaling // inferred from mutant phenotype /// 0019933 // cAMP-mediated signaling // not recorded /// 0030073 // insulin secretion // inferred from mutant phenotype /// 0032024 // positive regulation of insulin secretion // inferred from direct assay /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0043526 // neuroprotection // inferred from direct assay /// 0045597 // positive regulation of cell differentiation // inferred from mutant phenotype /// 0045777 // positive regulation of blood pressure // inferred from direct assay /// 0045823 // positive regulation of heart contraction // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046326 // positive regulation of glucose import // inferred from direct assay /// 0046879 // hormone secretion // inferred from direct assay /// 0051209 // release of sequestered calcium ion into cytosol // inferred from direct assay /// 0051929 // positive regulation of calcium ion transport via voltage-gated calcium channel activity // inferred from mutant phenotype 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045334 // clathrin-coated endocytic vesicle // inferred from mutant phenotype 0001653 // peptide receptor activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004967 // glucagon receptor activity // inferred from electronic annotation /// 0008528 // peptide receptor activity, G-protein coupled // inferred from electronic annotation /// 0008528 // peptide receptor activity, G-protein coupled // inferred from physical interaction /// 0017046 // peptide hormone binding // inferred from direct assay 1369700_at NM_031568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031568.1 /DB_XREF=gi:13928769 /GEN=Clcn7 /FEA=FLmRNA /CNT=5 /TID=Rn.10338.1 /TIER=FL /STK=1 /UG=Rn.10338 /LL=29233 /DEF=Rattus norvegicus Chloride channel 7 (Clcn7), mRNA. /PROD=chloride channel 7 /FL=gb:NM_031568.1 NM_031568 chloride channel 7 Clcn7 29233 NM_031568 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from electronic annotation /// 0009268 // response to pH // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005247 // voltage-gated chloride channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation 1369701_at NM_012597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012597.1 /DB_XREF=gi:6981161 /GEN=Lipc /FEA=FLmRNA /CNT=5 /TID=Rn.1195.1 /TIER=FL /STK=1 /UG=Rn.1195 /LL=24538 /DEF=Rattus norvegicus Lipase, hepatic (Lipc), mRNA. /PROD=lipase, hepatic /FL=gb:NM_012597.1 NM_012597 lipase, hepatic Lipc 24538 NM_012597 0001666 // response to hypoxia // inferred from expression pattern /// 0001889 // liver development // inferred from expression pattern /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from direct assay /// 0006633 // fatty acid biosynthetic process // not recorded /// 0006641 // triglyceride metabolic process // inferred from direct assay /// 0006658 // phosphatidylserine metabolic process // inferred from direct assay /// 0007623 // circadian rhythm // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008203 // cholesterol metabolic process // not recorded /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0009743 // response to carbohydrate stimulus // inferred from expression pattern /// 0010034 // response to acetate // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0015012 // heparan sulfate proteoglycan biosynthetic process // inferred from direct assay /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0016071 // mRNA metabolic process // inferred from mutant phenotype /// 0019433 // triglyceride catabolic process // not recorded /// 0030301 // cholesterol transport // not recorded /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032026 // response to magnesium ion // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0033993 // response to lipid // inferred from expression pattern /// 0034371 // chylomicron remodeling // inferred from direct assay /// 0034372 // very-low-density lipoprotein particle remodeling // inferred from direct assay /// 0034372 // very-low-density lipoprotein particle remodeling // not recorded /// 0034374 // low-density lipoprotein particle remodeling // inferred from direct assay /// 0034374 // low-density lipoprotein particle remodeling // not recorded /// 0034375 // high-density lipoprotein particle remodeling // inferred from direct assay /// 0034375 // high-density lipoprotein particle remodeling // not recorded /// 0034382 // chylomicron remnant clearance // inferred from direct assay /// 0034383 // low-density lipoprotein particle clearance // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0042632 // cholesterol homeostasis // not recorded /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0046337 // phosphatidylethanolamine metabolic process // inferred from direct assay /// 0046461 // neutral lipid catabolic process // inferred from direct assay /// 0046470 // phosphatidylcholine metabolic process // inferred from direct assay /// 0046473 // phosphatidic acid metabolic process // inferred from direct assay /// 0046475 // glycerophospholipid catabolic process // inferred from direct assay /// 0046688 // response to copper ion // inferred from expression pattern /// 0048589 // developmental growth // inferred from expression pattern /// 0051259 // protein oligomerization // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0070328 // triglyceride homeostasis // not recorded /// 0070542 // response to fatty acid // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0005902 // microvillus // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0034364 // high-density lipoprotein particle // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004091 // carboxylesterase activity // inferred from direct assay /// 0004622 // lysophospholipase activity // inferred from direct assay /// 0004806 // triglyceride lipase activity // inferred from direct assay /// 0004806 // triglyceride lipase activity // inferred from electronic annotation /// 0004806 // triglyceride lipase activity // not recorded /// 0008201 // heparin binding // inferred from direct assay /// 0008201 // heparin binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from direct assay /// 0008415 // acyltransferase activity // inferred from direct assay /// 0008970 // phospholipase A1 activity // inferred from direct assay /// 0016298 // lipase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030169 // low-density lipoprotein binding // inferred from direct assay /// 0034185 // apolipoprotein binding // inferred from direct assay /// 0034185 // apolipoprotein binding // inferred from physical interaction /// 0043395 // heparan sulfate proteoglycan binding // inferred from mutant phenotype /// 0047372 // acylglycerol lipase activity // inferred from direct assay 1369702_at NM_021842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021842.1 /DB_XREF=gi:11177873 /GEN=Ensa /FEA=FLmRNA /CNT=5 /TID=Rn.39333.1 /TIER=FL /STK=1 /UG=Rn.39333 /LL=60334 /DEF=Rattus norvegicus endosulfine alpha (Ensa), mRNA. /PROD=endosulfine alpha /FL=gb:NM_021842.1 NM_021842 endosulfine alpha Ensa 60334 NM_001033974 /// NM_021842 0009749 // response to glucose stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0015459 // potassium channel regulator activity // non-traceable author statement 1369703_at NM_023090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023090.1 /DB_XREF=gi:12831204 /GEN=Epas1 /FEA=FLmRNA /CNT=8 /TID=Rn.55138.1 /TIER=FL /STK=1 /UG=Rn.55138 /LL=29452 /DEF=Rattus norvegicus endothelial PAS domain protein 1 (Epas1), mRNA. /PROD=endothelial PAS domain protein 1 /FL=gb:NM_023090.1 NM_023090 endothelial PAS domain protein 1 Epas1 29452 NM_023090 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0001666 // response to hypoxia // inferred from direct assay /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // traceable author statement /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0001892 // embryonic placenta development // not recorded /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0001974 // blood vessel remodeling // not recorded /// 0002027 // regulation of heart rate // inferred from electronic annotation /// 0002027 // regulation of heart rate // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007601 // visual perception // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0042415 // norepinephrine metabolic process // inferred from electronic annotation /// 0042415 // norepinephrine metabolic process // not recorded /// 0043129 // surfactant homeostasis // inferred from electronic annotation /// 0043129 // surfactant homeostasis // not recorded /// 0043619 // regulation of transcription from RNA polymerase II promoter in response to oxidative stress // inferred from electronic annotation /// 0043619 // regulation of transcription from RNA polymerase II promoter in response to oxidative stress // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003704 // specific RNA polymerase II transcription factor activity // inferred from direct assay /// 0003704 // specific RNA polymerase II transcription factor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0035035 // histone acetyltransferase binding // inferred from electronic annotation /// 0035035 // histone acetyltransferase binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1369704_at NM_133296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133296.1 /DB_XREF=gi:18959229 /GEN=Xtrp3 /FEA=FLmRNA /CNT=8 /TID=Rn.29941.1 /TIER=FL /STK=1 /UG=Rn.29941 /DEF=Rattus norvegicus X transporter protein 3 (Xtrp3), mRNA. /PROD=X transporter protein 3 /FL=gb:NM_133296.1 NM_133296 solute carrier family 6 (proline IMINO transporter), member 20 Slc6a20 113918 NM_133296 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from direct assay /// 0006865 // amino acid transport // not recorded /// 0006865 // amino acid transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from sequence or structural similarity /// 0016324 // apical plasma membrane // inferred from electronic annotation 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0015171 // amino acid transmembrane transporter activity // inferred from direct assay /// 0015171 // amino acid transmembrane transporter activity // not recorded /// 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation 1369705_at AI169634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169634 /DB_XREF=gi:3709674 /DB_XREF=EST215522 /CLONE=RKIBV50 /FEA=FLmRNA /CNT=8 /TID=Rn.29941.1 /TIER=ConsEnd /STK=3 /UG=Rn.29941 /UG_TITLE=Rattus norvegicus X transporter protein 3 (Xtrp3), mRNA /FL=gb:NM_133296.1 AI169634 solute carrier family 6 (proline IMINO transporter), member 20 Slc6a20 113918 NM_133296 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from direct assay /// 0006865 // amino acid transport // not recorded /// 0006865 // amino acid transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from sequence or structural similarity /// 0016324 // apical plasma membrane // inferred from electronic annotation 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0015171 // amino acid transmembrane transporter activity // inferred from direct assay /// 0015171 // amino acid transmembrane transporter activity // not recorded /// 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation 1369706_at NM_019255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019255.1 /DB_XREF=gi:9506458 /GEN=Cacng /FEA=FLmRNA /CNT=7 /TID=Rn.24079.1 /TIER=FL /STK=1 /UG=Rn.24079 /LL=29658 /DEF=Rattus norvegicus calcium channel, voltage-dependent, gamma subunit 1 (Cacng), mRNA. /PROD=calcium channel, voltage-dependent, gammasubunit 1 /FL=gb:NM_019255.1 NM_019255 calcium channel, voltage-dependent, gamma subunit 1 Cacng1 29658 NM_019255 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // traceable author statement /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation 1369707_at NM_134335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134335.1 /DB_XREF=gi:19705442 /GEN=Myo9a /FEA=FLmRNA /CNT=6 /TID=Rn.30062.1 /TIER=FL /STK=1 /UG=Rn.30062 /LL=171296 /DEF=Rattus norvegicus myosin IXA (Myo9a), mRNA. /PROD=myosin IXA /FL=gb:NM_134335.1 NM_134335 myosin IXA Myo9a 171296 NM_134335 0007165 // signal transduction // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016459 // myosin complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369708_a_at NM_031017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031017.1 /DB_XREF=gi:13591923 /GEN=Creb1 /FEA=FLmRNA /CNT=6 /TID=Rn.10348.1 /TIER=FL /STK=1 /UG=Rn.10348 /LL=81646 /DEF=Rattus norvegicus cAMP response element binding protein 1 (Creb1), mRNA. /PROD=cAMP response element binding protein 1, isoformB /FL=gb:NM_031017.1 NM_031017 cAMP responsive element binding protein 1 Creb1 81646 NM_031017 /// NM_134443 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007595 // lactation // inferred from electronic annotation /// 0007595 // lactation // not recorded /// 0008361 // regulation of cell size // inferred from electronic annotation /// 0008361 // regulation of cell size // not recorded /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010033 // response to organic substance // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0021983 // pituitary gland development // not recorded /// 0030879 // mammary gland development // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0032916 // positive regulation of transforming growth factor-beta3 production // inferred from mutant phenotype /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0042752 // regulation of circadian rhythm // inferred from mutant phenotype /// 0042981 // regulation of apoptosis // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046887 // positive regulation of hormone secretion // inferred from electronic annotation /// 0046887 // positive regulation of hormone secretion // not recorded 0000785 // chromatin // inferred from direct assay /// 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from direct assay /// 0005667 // transcription factor complex // inferred from mutant phenotype /// 0005667 // transcription factor complex // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003704 // specific RNA polymerase II transcription factor activity // inferred from mutant phenotype /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1369709_at NM_012726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012726.1 /DB_XREF=gi:6981503 /GEN=Sca1 /FEA=FLmRNA /CNT=5 /TID=Rn.42922.1 /TIER=FL /STK=1 /UG=Rn.42922 /LL=25049 /DEF=Rattus norvegicus Spinocerebellar ataxia type 1 (Sca1), mRNA. /PROD=spinocerebellar ataxia type 1 /FL=gb:NM_012726.1 NM_012726 ataxin 1 Atxn1 25049 NM_012726 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0008542 // visual learning // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0042326 // negative regulation of phosphorylation // inferred from electronic annotation /// 0042326 // negative regulation of phosphorylation // not recorded /// 0043569 // negative regulation of insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0043569 // negative regulation of insulin-like growth factor receptor signaling pathway // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0051168 // nuclear export // not recorded /// 0051168 // nuclear export // inferred from sequence or structural similarity /// 0051168 // nuclear export // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005654 // nucleoplasm // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded /// 0016363 // nuclear matrix // inferred from sequence or structural similarity /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0042272 // nuclear RNA export factor complex // not recorded /// 0042272 // nuclear RNA export factor complex // inferred from sequence or structural similarity /// 0042272 // nuclear RNA export factor complex // inferred from electronic annotation /// 0042405 // nuclear inclusion body // not recorded /// 0042405 // nuclear inclusion body // inferred from sequence or structural similarity /// 0042405 // nuclear inclusion body // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008022 // protein C-terminus binding // inferred from sequence or structural similarity /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008266 // poly(U) RNA binding // not recorded /// 0008266 // poly(U) RNA binding // inferred from sequence or structural similarity /// 0008266 // poly(U) RNA binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0034046 // poly(G) RNA binding // not recorded /// 0034046 // poly(G) RNA binding // inferred from sequence or structural similarity /// 0034046 // poly(G) RNA binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0043621 // protein self-association // not recorded /// 0043621 // protein self-association // inferred from sequence or structural similarity /// 0043621 // protein self-association // inferred from electronic annotation 1369710_a_at NM_031728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031728.1 /DB_XREF=gi:13994176 /GEN=Snap91 /FEA=FLmRNA /CNT=5 /TID=Rn.11022.1 /TIER=FL /STK=1 /UG=Rn.11022 /LL=65178 /DEF=Rattus norvegicus synaptosomal-associated protein, 91 kDa (Snap91), mRNA. /PROD=synaptosomal-associated protein, 91 kDa /FL=gb:NM_031728.1 NM_031728 synaptosomal-associated protein 91 Snap91 65178 NM_031728 0007163 // establishment or maintenance of cell polarity // inferred from mutant phenotype /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // not recorded /// 0007409 // axonogenesis // inferred from mutant phenotype /// 0030100 // regulation of endocytosis // inferred from mutant phenotype /// 0048268 // clathrin coat assembly // inferred from electronic annotation /// 0048268 // clathrin coat assembly // not recorded /// 0051223 // regulation of protein transport // inferred from mutant phenotype 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030118 // clathrin coat // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from direct assay 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005545 // phosphatidylinositol binding // inferred from electronic annotation /// 0005545 // phosphatidylinositol binding // not recorded /// 0030276 // clathrin binding // inferred from electronic annotation /// 0032050 // clathrin heavy chain binding // inferred from electronic annotation /// 0032050 // clathrin heavy chain binding // not recorded 1369711_at NM_012494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012494.1 /DB_XREF=gi:6978472 /GEN=Agtr2 /FEA=FLmRNA /CNT=5 /TID=Rn.10178.1 /TIER=FL /STK=1 /UG=Rn.10178 /LL=24182 /DEF=Rattus norvegicus Angiotensin receptor 2 (Agtr2), mRNA. /PROD=angiotensin receptor 2 /FL=gb:NM_012494.1 NM_012494 angiotensin II receptor, type 2 Agtr2 24182 NM_012494 0002033 // vasodilation by angiotensin involved in regulation of systemic arterial blood pressure // not recorded /// 0002035 // brain renin-angiotensin system // not recorded /// 0006883 // cellular sodium ion homeostasis // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // traceable author statement /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007610 // behavior // not recorded /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0030147 // natriuresis // inferred from mutant phenotype /// 0030182 // neuron differentiation // traceable author statement /// 0032304 // negative regulation of icosanoid secretion // inferred from mutant phenotype /// 0032516 // positive regulation of phosphoprotein phosphatase activity // not recorded /// 0042990 // regulation of transcription factor import into nucleus // inferred from direct assay /// 0043065 // positive regulation of apoptosis // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045909 // positive regulation of vasodilation // inferred from mutant phenotype /// 0045909 // positive regulation of vasodilation // not recorded /// 0045909 // positive regulation of vasodilation // traceable author statement /// 0051387 // negative regulation of nerve growth factor receptor signaling pathway // not recorded /// 0071549 // cellular response to dexamethasone stimulus // inferred from direct assay /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from mutant phenotype 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0001965 // G-protein alpha-subunit binding // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004945 // angiotensin type II receptor activity // not recorded /// 0004945 // angiotensin type II receptor activity // traceable author statement /// 0004945 // angiotensin type II receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // inferred from physical interaction /// 0017046 // peptide hormone binding // inferred from mutant phenotype 1369712_at NM_031735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031735.1 /DB_XREF=gi:13929031 /GEN=Stk3 /FEA=FLmRNA /CNT=5 /TID=Rn.29131.1 /TIER=FL /STK=1 /UG=Rn.29131 /LL=65189 /DEF=Rattus norvegicus serinethreonine kinase 3 (Ste20, yeast homolog) STK3 (Stk3), mRNA. /PROD=serinethreonine kinase 3 (Ste20, yeast homolog)STK3 /FL=gb:NM_031735.1 NM_031735 serine/threonine kinase 3 (STE20 homolog, yeast) Stk3 65189 NM_031735 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0035329 // hippo signaling cascade // not recorded /// 0035329 // hippo signaling cascade // inferred from sequence or structural similarity /// 0035329 // hippo signaling cascade // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0043539 // protein serine/threonine kinase activator activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1369713_at M99418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M99418.1 /DB_XREF=gi:203459 /FEA=FLmRNA /CNT=5 /TID=Rn.10324.1 /TIER=FL /STK=1 /UG=Rn.10324 /LL=25706 /UG_GENE=Cckbr /DEF=Rat brain cholecystokinin receptor mRNA, complete cds. /PROD=cholecystokinin receptor /FL=gb:NM_013165.2 gb:M99418.1 M99418 cholecystokinin B receptor Cckbr 25706 NM_013165 0001821 // histamine secretion // inferred from mutant phenotype /// 0002209 // behavioral defense response // inferred from mutant phenotype /// 0006915 // apoptosis // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from sequence or structural similarity /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007586 // digestion // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0032230 // positive regulation of synaptic transmission, GABAergic // inferred from mutant phenotype /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0050806 // positive regulation of synaptic transmission // inferred from mutant phenotype /// 0051930 // regulation of sensory perception of pain // inferred from mutant phenotype /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype /// 0060206 // estrous cycle phase // inferred from direct assay /// 0070371 // ERK1 and ERK2 cascade // inferred from mutant phenotype /// 0090274 // positive regulation of somatostatin secretion // inferred from mutant phenotype 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015054 // gastrin receptor activity // inferred from mutant phenotype /// 0015054 // gastrin receptor activity // not recorded /// 0015054 // gastrin receptor activity // inferred from sequence or structural similarity /// 0015054 // gastrin receptor activity // inferred from electronic annotation 1369714_at NM_053690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053690.1 /DB_XREF=gi:16758509 /GEN=Drip78 /FEA=FLmRNA /CNT=5 /TID=Rn.63672.1 /TIER=FL /STK=1 /UG=Rn.63672 /LL=114481 /DEF=Rattus norvegicus dopamine receptor interacting protein (Drip78), mRNA. /PROD=dopamine receptor interacting protein /FL=gb:NM_053690.1 NM_053690 DnaJ (Hsp40) homolog, subfamily C, member 14 Dnajc14 114481 NM_053690 0006457 // protein folding // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001664 // G-protein-coupled receptor binding // inferred from direct assay /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0050780 // dopamine receptor binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from electronic annotation 1369715_at M95763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M95763.1 /DB_XREF=gi:202534 /FEA=FLmRNA /CNT=5 /TID=Rn.10545.1 /TIER=FL /STK=1 /UG=Rn.10545 /LL=79213 /UG_GENE=Gabt4 /DEF=Rattus norvegicus GABA transporter GAT-3 mRNA, complete cds. /PROD=GABA transporter /FL=gb:M95763.1 gb:M95738.1 gb:NM_024372.1 M95763 solute carrier family 6 (neurotransmitter transporter, GABA), member 11 Slc6a11 79213 NM_024372 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from direct assay /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from direct assay 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0005332 // gamma-aminobutyric acid:sodium symporter activity // inferred from direct assay /// 0005332 // gamma-aminobutyric acid:sodium symporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0042165 // neurotransmitter binding // inferred from direct assay 1369716_s_at NM_012976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012976.1 /DB_XREF=gi:6981153 /GEN=Lgals5 /FEA=FLmRNA /CNT=5 /TID=Rn.64588.1 /TIER=FL /STK=1 /UG=Rn.64588 /LL=25475 /DEF=Rattus norvegicus Lectin, galactose binding, soluble 5 (Galectin-5) (Lgals5), mRNA. /PROD=lectin, galactose binding, soluble 5(Galectin-5) /FL=gb:NM_012976.1 NM_012976 lectin, galactose binding, soluble 5 /// lectin, galactoside-binding, soluble, 9 Lgals5 /// Lgals9 25475 /// 25476 NM_012976 /// NM_012977 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004871 // signal transducer activity // not recorded /// 0005529 // sugar binding // inferred from electronic annotation 1369717_at M94555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M94555.1 /DB_XREF=gi:205745 /FEA=FLmRNA /CNT=5 /TID=Rn.47720.1 /TIER=FL /STK=1 /UG=Rn.47720 /LL=63887 /UG_GENE=Nmu /DEF=Rat neuromedin U mRNA, complete cds. /PROD=neuromedin U /FL=gb:NM_022239.1 gb:M94555.1 M94555 neuromedin U Nmu 63887 NM_022239 0001696 // gastric acid secretion // inferred from mutant phenotype /// 0006940 // regulation of smooth muscle contraction // inferred from electronic annotation /// 0006950 // response to stress // inferred from mutant phenotype /// 0007218 // neuropeptide signaling pathway // inferred from direct assay /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0009648 // photoperiodism // inferred from expression pattern /// 0019233 // sensory perception of pain // inferred from mutant phenotype /// 0042755 // eating behavior // inferred from mutant phenotype /// 0045987 // positive regulation of smooth muscle contraction // inferred from mutant phenotype /// 0046887 // positive regulation of hormone secretion // inferred from mutant phenotype /// 0050806 // positive regulation of synaptic transmission // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0043195 // terminal button // inferred from direct assay 0042922 // neuromedin U receptor binding // inferred from direct assay 1369718_at NM_031120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031120.1 /DB_XREF=gi:13592090 /GEN=Ssr3 /FEA=FLmRNA /CNT=5 /TID=Rn.21394.1 /TIER=FL /STK=1 /UG=Rn.21394 /LL=81784 /DEF=Rattus norvegicus TRAP-complex gamma subunit (Ssr3), mRNA. /PROD=TRAP-complex gamma subunit /FL=gb:NM_031120.1 NM_031120 signal sequence receptor, gamma Ssr3 81784 NM_031120 0006613 // cotranslational protein targeting to membrane // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005784 // Sec61 translocon complex // non-traceable author statement /// 0005784 // Sec61 translocon complex // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1369719_at NM_013004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013004.1 /DB_XREF=gi:6981355 /GEN=Phex /FEA=FLmRNA /CNT=4 /TID=Rn.37861.1 /TIER=FL /STK=1 /UG=Rn.37861 /LL=25512 /DEF=Rattus norvegicus Phosphate regulating neutral endopeptidase on the X chromosome (X-linked hypophosphatemia XLH) (Phex), mRNA. /PROD=phosphate regulating neutral endopeptidase onthe X chromosome (X-linked hypophosphatemia XLH) /FL=gb:NM_013004.1 NM_013004 phosphate regulating endopeptidase homolog, X-linked Phex 25512 NM_013004 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded 0004175 // endopeptidase activity // inferred from expression pattern /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation 1369720_at NM_053986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053986.1 /DB_XREF=gi:16758889 /GEN=Myo1b /FEA=FLmRNA /CNT=4 /TID=Rn.36339.1 /TIER=FL /STK=1 /UG=Rn.36339 /LL=117057 /DEF=Rattus norvegicus myosin IB (Myo1b), mRNA. /PROD=myosin IB /FL=gb:NM_053986.1 NM_053986 myosin Ib Myo1b 117057 NM_053986 0007399 // nervous system development // non-traceable author statement 0005856 // cytoskeleton // traceable author statement /// 0005903 // brush border // inferred from direct assay /// 0016459 // myosin complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1369721_at NM_019148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019148.1 /DB_XREF=gi:9507156 /GEN=Strn /FEA=FLmRNA /CNT=4 /TID=Rn.37469.1 /TIER=FL /STK=1 /UG=Rn.37469 /LL=29149 /DEF=Rattus norvegicus striatin (Strn), mRNA. /PROD=striatin /FL=gb:NM_019148.1 NM_019148 striatin, calmodulin binding protein Strn 29149 NM_019148 0007626 // locomotory behavior // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016358 // dendrite development // inferred from mutant phenotype 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation /// 0000159 // protein phosphatase type 2A complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0005923 // tight junction // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from direct assay /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0030331 // estrogen receptor binding // inferred from electronic annotation /// 0030331 // estrogen receptor binding // not recorded /// 0032403 // protein complex binding // inferred from direct assay /// 0032403 // protein complex binding // not recorded /// 0032403 // protein complex binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // non-traceable author statement /// 0051721 // protein phosphatase 2A binding // inferred from electronic annotation /// 0051721 // protein phosphatase 2A binding // not recorded /// 0070016 // armadillo repeat domain binding // inferred from electronic annotation /// 0070016 // armadillo repeat domain binding // not recorded 1369722_a_at NM_022296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022296.1 /DB_XREF=gi:11995463 /GEN=Xylt2 /FEA=FLmRNA /CNT=4 /TID=Rn.22727.1 /TIER=FL /STK=1 /UG=Rn.22727 /LL=64134 /DEF=Rattus norvegicus xylosyltransferase 2 (Xylt2), mRNA. /PROD=xylosyltransferase 2 /FL=gb:NM_022296.1 NM_022296 xylosyltransferase II Xylt2 64134 NM_022296 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008375 // acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030158 // protein xylosyltransferase activity // inferred from electronic annotation 1369723_at NM_022296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022296.1 /DB_XREF=gi:11995463 /GEN=Xylt2 /FEA=FLmRNA /CNT=4 /TID=Rn.22727.1 /TIER=FL /STK=1 /UG=Rn.22727 /LL=64134 /DEF=Rattus norvegicus xylosyltransferase 2 (Xylt2), mRNA. /PROD=xylosyltransferase 2 /FL=gb:NM_022296.1 NM_022296 xylosyltransferase II Xylt2 64134 NM_022296 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008375 // acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030158 // protein xylosyltransferase activity // inferred from electronic annotation 1369724_at NM_021698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021698.1 /DB_XREF=gi:11067434 /GEN=F13a /FEA=FLmRNA /CNT=4 /TID=Rn.42925.1 /TIER=FL /STK=1 /UG=Rn.42925 /LL=60327 /DEF=Rattus norvegicus coagulation factor XIIIa (F13a), mRNA. /PROD=coagulation factor XIIIa /FL=gb:NM_021698.1 NM_021698 coagulation factor XIII, A1 polypeptide F13a1 60327 NM_021698 0007596 // blood coagulation // inferred from direct assay /// 0007596 // blood coagulation // not recorded /// 0007596 // blood coagulation // inferred from electronic annotation /// 0018149 // peptide cross-linking // inferred from electronic annotation /// 0018149 // peptide cross-linking // not recorded /// 0042060 // wound healing // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0003810 // protein-glutamine gamma-glutamyltransferase activity // inferred from electronic annotation /// 0003810 // protein-glutamine gamma-glutamyltransferase activity // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369725_at NM_020101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020101.1 /DB_XREF=gi:9910339 /GEN=LOC56826 /FEA=FLmRNA /CNT=4 /TID=Rn.48679.1 /TIER=FL /STK=1 /UG=Rn.48679 /LL=56826 /DEF=Rattus norvegicus Centaurin-alpha2 protein (LOC56826), mRNA. /PROD=Centaurin-alpha2 protein /FL=gb:NM_020101.1 NM_020101 ArfGAP with dual PH domains 2 Adap2 56826 NM_020101 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from sequence or structural similarity /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005740 // mitochondrial envelope // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005545 // phosphatidylinositol binding // inferred from mutant phenotype /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from direct assay /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from direct assay /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // not recorded /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // inferred from direct assay /// 0043533 // inositol 1,3,4,5 tetrakisphosphate binding // not recorded /// 0043533 // inositol 1,3,4,5 tetrakisphosphate binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1369726_at NM_033098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_033098.1 /DB_XREF=gi:16975493 /GEN=Tapasin /FEA=FLmRNA /CNT=4 /TID=Rn.61065.1 /TIER=FL /STK=1 /UG=Rn.61065 /LL=25217 /DEF=Rattus norvegicus Tap-binding protein (Tapasin), mRNA. /PROD=tapasin /FL=gb:NM_033098.1 NM_033098 TAP binding protein Tapbp 25217 NM_033098 0002397 // MHC class I protein complex assembly // inferred from expression pattern /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // inferred from electronic annotation /// 0002479 // antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent // not recorded /// 0006952 // defense response // inferred from electronic annotation /// 0006952 // defense response // not recorded /// 0019885 // antigen processing and presentation of endogenous peptide antigen via MHC class I // inferred from electronic annotation /// 0050823 // peptide antigen stabilization // inferred from electronic annotation /// 0050823 // peptide antigen stabilization // not recorded 0000139 // Golgi membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0042824 // MHC class I peptide loading complex // inferred from direct assay /// 0042825 // TAP complex // not recorded 0005515 // protein binding // not recorded /// 0046978 // TAP1 binding // not recorded /// 0046979 // TAP2 binding // not recorded /// 0051082 // unfolded protein binding // non-traceable author statement 1369727_at NM_013112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013112.1 /DB_XREF=gi:6978516 /GEN=Apoa2 /FEA=FLmRNA /CNT=4 /TID=Rn.10309.1 /TIER=FL /STK=1 /UG=Rn.10309 /LL=25649 /DEF=Rattus norvegicus Apolipoprotein A-II (Apoa2), mRNA. /PROD=apolipoprotein A-II /FL=gb:NM_013112.1 NM_013112 apolipoprotein A-II Apoa2 25649 NM_013112 0002526 // acute inflammatory response // inferred from expression pattern /// 0002740 // negative regulation of cytokine secretion involved in immune response // inferred from electronic annotation /// 0002740 // negative regulation of cytokine secretion involved in immune response // not recorded /// 0006457 // protein folding // inferred from electronic annotation /// 0006457 // protein folding // not recorded /// 0006656 // phosphatidylcholine biosynthetic process // inferred from electronic annotation /// 0006656 // phosphatidylcholine biosynthetic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // not recorded /// 0006869 // lipid transport // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0009395 // phospholipid catabolic process // inferred from electronic annotation /// 0009395 // phospholipid catabolic process // not recorded /// 0009749 // response to glucose stimulus // inferred from electronic annotation /// 0009749 // response to glucose stimulus // not recorded /// 0010873 // positive regulation of cholesterol esterification // inferred from electronic annotation /// 0010873 // positive regulation of cholesterol esterification // not recorded /// 0010903 // negative regulation of very-low-density lipoprotein particle remodeling // inferred from electronic annotation /// 0010903 // negative regulation of very-low-density lipoprotein particle remodeling // not recorded /// 0030300 // regulation of intestinal cholesterol absorption // inferred from electronic annotation /// 0030300 // regulation of intestinal cholesterol absorption // not recorded /// 0030301 // cholesterol transport // inferred from direct assay /// 0031100 // organ regeneration // inferred from direct assay /// 0031647 // regulation of protein stability // inferred from electronic annotation /// 0031647 // regulation of protein stability // not recorded /// 0032375 // negative regulation of cholesterol transport // not recorded /// 0032375 // negative regulation of cholesterol transport // inferred from electronic annotation /// 0033344 // cholesterol efflux // inferred from electronic annotation /// 0033344 // cholesterol efflux // not recorded /// 0033700 // phospholipid efflux // inferred from electronic annotation /// 0033700 // phospholipid efflux // not recorded /// 0034370 // triglyceride-rich lipoprotein particle remodeling // inferred from electronic annotation /// 0034370 // triglyceride-rich lipoprotein particle remodeling // not recorded /// 0034374 // low-density lipoprotein particle remodeling // inferred from electronic annotation /// 0034374 // low-density lipoprotein particle remodeling // not recorded /// 0034375 // high-density lipoprotein particle remodeling // inferred from electronic annotation /// 0034375 // high-density lipoprotein particle remodeling // not recorded /// 0034380 // high-density lipoprotein particle assembly // inferred from electronic annotation /// 0034380 // high-density lipoprotein particle assembly // not recorded /// 0034384 // high-density lipoprotein particle clearance // inferred from electronic annotation /// 0034384 // high-density lipoprotein particle clearance // not recorded /// 0042157 // lipoprotein metabolic process // inferred from electronic annotation /// 0042157 // lipoprotein metabolic process // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0043691 // reverse cholesterol transport // inferred from electronic annotation /// 0043691 // reverse cholesterol transport // not recorded /// 0045416 // positive regulation of interleukin-8 biosynthetic process // not recorded /// 0045416 // positive regulation of interleukin-8 biosynthetic process // inferred from sequence or structural similarity /// 0045416 // positive regulation of interleukin-8 biosynthetic process // inferred from electronic annotation /// 0046340 // diacylglycerol catabolic process // inferred from electronic annotation /// 0046340 // diacylglycerol catabolic process // not recorded /// 0050995 // negative regulation of lipid catabolic process // inferred from electronic annotation /// 0050995 // negative regulation of lipid catabolic process // not recorded /// 0050996 // positive regulation of lipid catabolic process // inferred from electronic annotation /// 0050996 // positive regulation of lipid catabolic process // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0060192 // negative regulation of lipase activity // inferred from electronic annotation /// 0060192 // negative regulation of lipase activity // not recorded /// 0060621 // negative regulation of cholesterol import // inferred from electronic annotation /// 0060621 // negative regulation of cholesterol import // not recorded /// 0060695 // negative regulation of cholesterol transporter activity // inferred from electronic annotation /// 0060695 // negative regulation of cholesterol transporter activity // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005788 // endoplasmic reticulum lumen // not recorded /// 0034361 // very-low-density lipoprotein particle // inferred from electronic annotation /// 0034361 // very-low-density lipoprotein particle // not recorded /// 0034364 // high-density lipoprotein particle // not recorded /// 0034364 // high-density lipoprotein particle // inferred from electronic annotation /// 0034366 // spherical high-density lipoprotein particle // inferred from electronic annotation /// 0034366 // spherical high-density lipoprotein particle // not recorded /// 0042627 // chylomicron // inferred from electronic annotation /// 0042627 // chylomicron // not recorded 0005319 // lipid transporter activity // inferred from electronic annotation /// 0005319 // lipid transporter activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005543 // phospholipid binding // not recorded /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008035 // high-density lipoprotein binding // inferred from electronic annotation /// 0008035 // high-density lipoprotein binding // not recorded /// 0008289 // lipid binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0015485 // cholesterol binding // inferred from electronic annotation /// 0015485 // cholesterol binding // not recorded /// 0017127 // cholesterol transporter activity // inferred from direct assay /// 0017127 // cholesterol transporter activity // not recorded /// 0017127 // cholesterol transporter activity // inferred from electronic annotation /// 0031210 // phosphatidylcholine binding // inferred from electronic annotation /// 0031210 // phosphatidylcholine binding // not recorded /// 0034190 // apolipoprotein receptor binding // inferred from electronic annotation /// 0034190 // apolipoprotein receptor binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0055102 // lipase inhibitor activity // inferred from electronic annotation /// 0055102 // lipase inhibitor activity // not recorded /// 0060228 // phosphatidylcholine-sterol O-acyltransferase activator activity // inferred from electronic annotation /// 0060228 // phosphatidylcholine-sterol O-acyltransferase activator activity // not recorded /// 0070653 // high-density lipoprotein receptor binding // inferred from electronic annotation /// 0070653 // high-density lipoprotein receptor binding // not recorded 1369728_at NM_022686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022686.1 /DB_XREF=gi:12083634 /GEN=Hist4 /FEA=FLmRNA /CNT=4 /TID=Rn.44120.1 /TIER=FL /STK=1 /UG=Rn.44120 /LL=64627 /DEF=Rattus norvegicus germinal histone H4 gene (Hist4), mRNA. /PROD=germinal histone H4 gene /FL=gb:NM_022686.1 NM_022686 similar to germinal histone H4 gene LOC680097 680097 XM_001055696 /// XM_002725263 0001503 // ossification // inferred from electronic annotation /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045653 // negative regulation of megakaryocyte differentiation // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation 1369729_at NM_053979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053979.1 /DB_XREF=gi:16758875 /GEN=Arl5 /FEA=FLmRNA /CNT=6 /TID=Rn.2803.1 /TIER=FL /STK=1 /UG=Rn.2803 /LL=117050 /DEF=Rattus norvegicus ADP-ribosylation factor-like 5 (Arl5), mRNA. /PROD=ADP-ribosylation factor-like 5 /FL=gb:NM_053979.1 NM_053979 ADP-ribosylation factor-like 5A Arl5a 117050 NM_053979 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation 1369730_a_at AJ294475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ294475.1 /DB_XREF=gi:11191814 /GEN=Gfra4 /FEA=mRNA /CNT=1 /TID=Rn.64500.2 /TIER=ConsEnd /STK=0 /UG=Rn.64500 /LL=66023 /DEF=Rattus norvegicus mRNA for neurotrophic factor receptor splice variant A (Gfra4 gene). /PROD=neurotrophic factor receptor AJ294475 GDNF family receptor alpha 4 Gfra4 66023 NM_023967 0030279 // negative regulation of ossification // not recorded 0005576 // extracellular region // inferred from mutant phenotype /// 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0016167 // glial cell line-derived neurotrophic factor receptor activity // inferred from direct assay 1369731_at AF102854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF102854.1 /DB_XREF=gi:4151806 /FEA=FLmRNA /CNT=4 /TID=Rn.42893.1 /TIER=FL /STK=1 /UG=Rn.42893 /LL=59322 /UG_GENE=LOC59322 /DEF=Rattus norvegicus membrane-associated guanylate kinase-interacting protein 2 Maguin-2 mRNA, complete cds. /PROD=membrane-associated guanylate kinase-interactingprotein 2 Maguin-2 /FL=gb:AF102854.1 gb:NM_021686.1 AF102854 connector enhancer of kinase suppressor of Ras 2 Cnksr2 59322 NM_001113366 /// NM_021686 0009966 // regulation of signal transduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0045211 // postsynaptic membrane // traceable author statement 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement 1369732_a_at NM_031695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031695.1 /DB_XREF=gi:13928967 /GEN=Siat5 /FEA=FLmRNA /CNT=4 /TID=Rn.33216.1 /TIER=FL /STK=1 /UG=Rn.33216 /LL=64442 /DEF=Rattus norvegicus sialyltransferase 5 (Siat5), mRNA. /PROD=sialyltransferase 5 /FL=gb:NM_031695.1 NM_031695 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 St3gal2 64442 NM_031695 0006486 // protein glycosylation // inferred from direct assay /// 0006486 // protein glycosylation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0003836 // beta-galactoside alpha-2,3-sialyltransferase activity // inferred from electronic annotation /// 0008373 // sialyltransferase activity // inferred from direct assay /// 0008373 // sialyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1369733_at NM_053357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053357.1 /DB_XREF=gi:16758081 /GEN=Catnb /FEA=FLmRNA /CNT=4 /TID=Rn.22176.1 /TIER=FL /STK=1 /UG=Rn.22176 /LL=84353 /DEF=Rattus norvegicus beta-catenin (Catnb), mRNA. /PROD=beta-catenin /FL=gb:AF121265.1 gb:NM_053357.1 NM_053357 catenin (cadherin associated protein), beta 1 Ctnnb1 84353 NM_053357 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000578 // embryonic axis specification // not recorded /// 0000904 // cell morphogenesis involved in differentiation // inferred from electronic annotation /// 0000904 // cell morphogenesis involved in differentiation // not recorded /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // not recorded /// 0001706 // endoderm formation // not recorded /// 0001706 // endoderm formation // inferred from electronic annotation /// 0001708 // cell fate specification // inferred from electronic annotation /// 0001708 // cell fate specification // not recorded /// 0001709 // cell fate determination // not recorded /// 0001709 // cell fate determination // inferred from electronic annotation /// 0001711 // endodermal cell fate commitment // inferred from electronic annotation /// 0001711 // endodermal cell fate commitment // not recorded /// 0001822 // kidney development // not recorded /// 0001889 // liver development // inferred from expression pattern /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0003337 // mesenchymal to epithelial transition involved in metanephros morphogenesis // not recorded /// 0003338 // metanephros morphogenesis // inferred from electronic annotation /// 0003338 // metanephros morphogenesis // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007398 // ectoderm development // inferred from electronic annotation /// 0007398 // ectoderm development // not recorded /// 0007403 // glial cell fate determination // inferred from electronic annotation /// 0007403 // glial cell fate determination // not recorded /// 0007494 // midgut development // inferred from expression pattern /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0009948 // anterior/posterior axis specification // inferred from electronic annotation /// 0009948 // anterior/posterior axis specification // not recorded /// 0009950 // dorsal/ventral axis specification // inferred from electronic annotation /// 0009950 // dorsal/ventral axis specification // not recorded /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // not recorded /// 0009987 // cellular process // inferred from electronic annotation /// 0009987 // cellular process // not recorded /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010628 // positive regulation of gene expression // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0010909 // positive regulation of heparan sulfate proteoglycan biosynthetic process // inferred from electronic annotation /// 0010909 // positive regulation of heparan sulfate proteoglycan biosynthetic process // not recorded /// 0014010 // Schwann cell proliferation // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // not recorded /// 0016337 // cell-cell adhesion // inferred from direct assay /// 0016337 // cell-cell adhesion // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // inferred from sequence or structural similarity /// 0022009 // central nervous system vasculogenesis // not recorded /// 0022405 // hair cycle process // not recorded /// 0022405 // hair cycle process // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030217 // T cell differentiation // not recorded /// 0030217 // T cell differentiation // inferred from electronic annotation /// 0030316 // osteoclast differentiation // not recorded /// 0030316 // osteoclast differentiation // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030539 // male genitalia development // not recorded /// 0030856 // regulation of epithelial cell differentiation // not recorded /// 0030856 // regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030858 // positive regulation of epithelial cell differentiation // not recorded /// 0030858 // positive regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0030997 // regulation of centriole-centriole cohesion // inferred from electronic annotation /// 0030997 // regulation of centriole-centriole cohesion // not recorded /// 0031016 // pancreas development // inferred from electronic annotation /// 0031016 // pancreas development // not recorded /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // not recorded /// 0032331 // negative regulation of chondrocyte differentiation // inferred from electronic annotation /// 0032331 // negative regulation of chondrocyte differentiation // not recorded /// 0032355 // response to estradiol stimulus // not recorded /// 0033077 // T cell differentiation in thymus // inferred from electronic annotation /// 0033077 // T cell differentiation in thymus // not recorded /// 0034097 // response to cytokine stimulus // inferred from direct assay /// 0034333 // adherens junction assembly // not recorded /// 0034394 // protein localization at cell surface // not recorded /// 0034613 // cellular protein localization // inferred from electronic annotation /// 0034613 // cellular protein localization // not recorded /// 0035050 // embryonic heart tube development // inferred from electronic annotation /// 0035050 // embryonic heart tube development // not recorded /// 0035112 // genitalia morphogenesis // inferred from electronic annotation /// 0035112 // genitalia morphogenesis // not recorded /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0035117 // embryonic arm morphogenesis // inferred from electronic annotation /// 0035117 // embryonic arm morphogenesis // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042129 // regulation of T cell proliferation // inferred from electronic annotation /// 0042129 // regulation of T cell proliferation // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from expression pattern /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0043587 // tongue morphogenesis // not recorded /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0045445 // myoblast differentiation // inferred from expression pattern /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045453 // bone resorption // inferred from electronic annotation /// 0045453 // bone resorption // not recorded /// 0045595 // regulation of cell differentiation // not recorded /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045603 // positive regulation of endothelial cell differentiation // inferred from electronic annotation /// 0045603 // positive regulation of endothelial cell differentiation // not recorded /// 0045667 // regulation of osteoblast differentiation // not recorded /// 0045667 // regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045670 // regulation of osteoclast differentiation // not recorded /// 0045670 // regulation of osteoclast differentiation // inferred from electronic annotation /// 0045671 // negative regulation of osteoclast differentiation // inferred from electronic annotation /// 0045671 // negative regulation of osteoclast differentiation // not recorded /// 0045743 // positive regulation of fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0045743 // positive regulation of fibroblast growth factor receptor signaling pathway // not recorded /// 0045768 // positive regulation of anti-apoptosis // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded /// 0048489 // synaptic vesicle transport // inferred from electronic annotation /// 0048489 // synaptic vesicle transport // not recorded /// 0048513 // organ development // not recorded /// 0048513 // organ development // inferred from electronic annotation /// 0048538 // thymus development // inferred from electronic annotation /// 0048538 // thymus development // not recorded /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // not recorded /// 0048599 // oocyte development // not recorded /// 0048617 // embryonic foregut morphogenesis // inferred from electronic annotation /// 0048617 // embryonic foregut morphogenesis // not recorded /// 0048660 // regulation of smooth muscle cell proliferation // not recorded /// 0050808 // synapse organization // inferred from electronic annotation /// 0050808 // synapse organization // not recorded /// 0050909 // sensory perception of taste // not recorded /// 0051145 // smooth muscle cell differentiation // not recorded /// 0051291 // protein heterooligomerization // inferred from physical interaction /// 0060066 // fallopian tube development // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060173 // limb development // not recorded /// 0060439 // trachea morphogenesis // not recorded /// 0060439 // trachea morphogenesis // inferred from electronic annotation /// 0060440 // trachea formation // inferred from electronic annotation /// 0060440 // trachea formation // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // inferred from electronic annotation /// 0060479 // lung cell differentiation // inferred from electronic annotation /// 0060479 // lung cell differentiation // not recorded /// 0060484 // lung-associated mesenchyme development // inferred from electronic annotation /// 0060484 // lung-associated mesenchyme development // not recorded /// 0060492 // lung induction // inferred from electronic annotation /// 0060492 // lung induction // not recorded /// 0060742 // epithelial cell differentiation involved in prostate gland development // inferred from electronic annotation /// 0060742 // epithelial cell differentiation involved in prostate gland development // not recorded /// 0060769 // positive regulation of epithelial cell proliferation involved in prostate gland development // inferred from electronic annotation /// 0060769 // positive regulation of epithelial cell proliferation involved in prostate gland development // not recorded /// 0060789 // hair follicle placode formation // inferred from electronic annotation /// 0060789 // hair follicle placode formation // not recorded /// 0060916 // mesenchymal cell proliferation involved in lung development // inferred from electronic annotation /// 0060916 // mesenchymal cell proliferation involved in lung development // not recorded /// 0061047 // positive regulation of branching involved in lung morphogenesis // inferred from electronic annotation /// 0061047 // positive regulation of branching involved in lung morphogenesis // not recorded /// 0061154 // endothelial tube morphogenesis // not recorded /// 0070602 // regulation of centromeric sister chromatid cohesion // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // not recorded /// 0071407 // cellular response to organic cyclic substance // not recorded /// 0071681 // cellular response to indole-3-methanol // inferred from electronic annotation /// 0071681 // cellular response to indole-3-methanol // not recorded /// 0072001 // renal system development // inferred from electronic annotation /// 0072001 // renal system development // not recorded /// 0072033 // renal vesicle formation // not recorded /// 0072053 // renal inner medulla development // inferred from electronic annotation /// 0072053 // renal inner medulla development // not recorded /// 0072054 // renal outer medulla development // inferred from electronic annotation /// 0072054 // renal outer medulla development // not recorded /// 0072079 // nephron tubule formation // not recorded /// 0090279 // regulation of calcium ion import // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0005913 // cell-cell adherens junction // not recorded /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005916 // fascia adherens // inferred from electronic annotation /// 0005916 // fascia adherens // not recorded /// 0005924 // cell-substrate adherens junction // not recorded /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016328 // lateral plasma membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // not recorded /// 0016342 // catenin complex // inferred from electronic annotation /// 0016342 // catenin complex // not recorded /// 0030018 // Z disc // inferred from electronic annotation /// 0030018 // Z disc // not recorded /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030054 // cell junction // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030877 // beta-catenin destruction complex // inferred from electronic annotation /// 0031253 // cell projection membrane // not recorded /// 0031253 // cell projection membrane // inferred from electronic annotation /// 0031528 // microvillus membrane // inferred from electronic annotation /// 0031528 // microvillus membrane // not recorded /// 0032993 // protein-DNA complex // inferred from electronic annotation /// 0032993 // protein-DNA complex // not recorded /// 0034747 // Axin-APC-beta-catenin-GSK3B complex // inferred from electronic annotation /// 0034747 // Axin-APC-beta-catenin-GSK3B complex // not recorded /// 0043005 // neuron projection // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0043296 // apical junction complex // inferred from electronic annotation /// 0043296 // apical junction complex // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded /// 0045202 // synapse // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0070369 // beta-catenin-TCF7L2 complex // inferred from electronic annotation /// 0070369 // beta-catenin-TCF7L2 complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003704 // specific RNA polymerase II transcription factor activity // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019900 // kinase binding // inferred from electronic annotation /// 0019900 // kinase binding // not recorded /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // not recorded /// 0030331 // estrogen receptor binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction /// 0035257 // nuclear hormone receptor binding // not recorded /// 0045294 // alpha-catenin binding // inferred from electronic annotation /// 0045294 // alpha-catenin binding // not recorded /// 0045296 // cadherin binding // inferred from direct assay /// 0045296 // cadherin binding // inferred from physical interaction /// 0045296 // cadherin binding // not recorded /// 0045296 // cadherin binding // inferred from electronic annotation /// 0046332 // SMAD binding // not recorded /// 0046332 // SMAD binding // inferred from electronic annotation /// 0070411 // I-SMAD binding // inferred from electronic annotation /// 0070411 // I-SMAD binding // not recorded /// 0070412 // R-SMAD binding // not recorded /// 0070491 // transcription repressor binding // inferred from electronic annotation /// 0070491 // transcription repressor binding // not recorded 1369734_at NM_053339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053339.1 /DB_XREF=gi:16758055 /GEN=Acox3 /FEA=FLmRNA /CNT=4 /TID=Rn.10546.1 /TIER=FL /STK=1 /UG=Rn.10546 /LL=83522 /DEF=Rattus norvegicus acyl-Coenzyme A oxidase 3, pristanoyl (Acox3), mRNA. /PROD=acyl-Coenzyme A oxidase 3, pristanoyl /FL=gb:NM_053339.1 NM_053339 acyl-Coenzyme A oxidase 3, pristanoyl Acox3 83522 NM_053339 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0033540 // fatty acid beta-oxidation using acyl-CoA oxidase // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation 0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0003997 // acyl-CoA oxidase activity // inferred from electronic annotation /// 0005504 // fatty acid binding // inferred from direct assay /// 0016402 // pristanoyl-CoA oxidase activity // inferred from direct assay /// 0016402 // pristanoyl-CoA oxidase activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from direct assay /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1369735_at NM_057100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057100.1 /DB_XREF=gi:16923941 /GEN=Gas6 /FEA=FLmRNA /CNT=4 /TID=Rn.52228.1 /TIER=FL /STK=1 /UG=Rn.52228 /LL=58935 /DEF=Rattus norvegicus growth arrest specific 6 (Gas6), mRNA. /PROD=growth arrest specific 6 /FL=gb:NM_057100.1 NM_057100 growth arrest specific 6 Gas6 58935 NM_057100 0009267 // cellular response to starvation // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0040008 // regulation of growth // inferred from electronic annotation /// 0042246 // tissue regeneration // traceable author statement /// 0048771 // tissue remodeling // traceable author statement /// 0071363 // cellular response to growth factor stimulus // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0008083 // growth factor activity // traceable author statement /// 0030971 // receptor tyrosine kinase binding // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 1369736_at NM_012843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012843.1 /DB_XREF=gi:6978806 /GEN=Emp1 /FEA=FLmRNA /CNT=4 /TID=Rn.10242.1 /TIER=FL /STK=1 /UG=Rn.10242 /LL=25314 /DEF=Rattus norvegicus Epithelial membrane protein 1 (Emp1), mRNA. /PROD=epithelial membrane protein 1 /FL=gb:NM_012843.1 NM_012843 epithelial membrane protein 1 Emp1 25314 NM_012843 0016049 // cell growth // inferred from electronic annotation 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 1369737_at NM_017334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017334.1 /DB_XREF=gi:8393192 /GEN=CREM /FEA=FLmRNA /CNT=3 /TID=Rn.76185.1 /TIER=FL /STK=1 /UG=Rn.76185 /DEF=Rattus norvegicus transcriptional repressor CREM (CREM), mRNA. /PROD=transcriptional repressor CREM /FL=gb:NM_017334.1 NM_017334 cAMP responsive element modulator Crem 25620 NM_001110860 /// NM_017334 0006006 // glucose metabolic process // inferred from expression pattern /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0006631 // fatty acid metabolic process // inferred from expression pattern /// 0006687 // glycosphingolipid metabolic process // inferred from electronic annotation /// 0006687 // glycosphingolipid metabolic process // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0019933 // cAMP-mediated signaling // traceable author statement /// 0042752 // regulation of circadian rhythm // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048384 // retinoic acid receptor signaling pathway // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1369738_s_at NM_017334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017334.1 /DB_XREF=gi:8393192 /GEN=CREM /FEA=FLmRNA /CNT=3 /TID=Rn.76185.1 /TIER=FL /STK=1 /UG=Rn.76185 /DEF=Rattus norvegicus transcriptional repressor CREM (CREM), mRNA. /PROD=transcriptional repressor CREM /FL=gb:NM_017334.1 NM_017334 cAMP responsive element modulator Crem 25620 NM_001110860 /// NM_017334 0006006 // glucose metabolic process // inferred from expression pattern /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0006631 // fatty acid metabolic process // inferred from expression pattern /// 0006687 // glycosphingolipid metabolic process // inferred from electronic annotation /// 0006687 // glycosphingolipid metabolic process // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0019933 // cAMP-mediated signaling // traceable author statement /// 0042752 // regulation of circadian rhythm // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048384 // retinoic acid receptor signaling pathway // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1369739_at D85558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D85558.1 /DB_XREF=gi:1526441 /FEA=FLmRNA /CNT=9 /TID=Rn.9891.1 /TIER=FL /STK=1 /UG=Rn.9891 /LL=24536 /UG_GENE=Lepr /DEF=Rattus norvegicus mRNA for leptin receptor Ob-Rb, complete cds. /PROD=leptin receptor Ob-Rb /FL=gb:AF287268.1 gb:U60151.1 gb:D84551.1 gb:NM_012596.1 gb:U52966.1 gb:D85558.1 gb:D84126.1 gb:D84550.1 gb:D84125.1 D85558 leptin receptor Lepr 24536 NM_012596 0001525 // angiogenesis // inferred from mutant phenotype /// 0001542 // ovulation from ovarian follicle // inferred from expression pattern /// 0006091 // generation of precursor metabolites and energy // non-traceable author statement /// 0007565 // female pregnancy // inferred from expression pattern /// 0008203 // cholesterol metabolic process // not recorded /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0031669 // cellular response to nutrient levels // inferred from expression pattern /// 0033210 // leptin-mediated signaling pathway // inferred from direct assay /// 0035094 // response to nicotine // inferred from expression pattern /// 0042221 // response to chemical stimulus // inferred from expression pattern /// 0042755 // eating behavior // inferred from mutant phenotype /// 0043410 // positive regulation of MAPKKK cascade // inferred from direct assay /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0051346 // negative regulation of hydrolase activity // not recorded /// 0051346 // negative regulation of hydrolase activity // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016500 // protein-hormone receptor activity // inferred from direct assay /// 0016500 // protein-hormone receptor activity // inferred from mutant phenotype /// 0017046 // peptide hormone binding // inferred from direct assay /// 0017046 // peptide hormone binding // inferred from mutant phenotype 1369740_at L25264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L25264.1 /DB_XREF=gi:407998 /GEN=GIRK1 /FEA=FLmRNA /CNT=7 /TID=Rn.9809.1 /TIER=FL /STK=1 /UG=Rn.9809 /LL=50599 /DEF=Rattus norvegicus G-protein-coupled muscarinic potassium channel (GIRK1) mRNA, complete cds. /PROD=potassium channel /FL=gb:U01071.1 gb:U09243.1 gb:U01141.1 gb:NM_031610.1 gb:L25264.1 L25264 potassium inwardly-rectifying channel, subfamily J, member 3 Kcnj3 50599 NM_031610 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0051602 // response to electrical stimulus // inferred from expression pattern 0009897 // external side of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030315 // T-tubule // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // not recorded /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015467 // G-protein activated inward rectifier potassium channel activity // inferred from electronic annotation 1369741_at U09243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U09243.1 /DB_XREF=gi:485291 /FEA=FLmRNA /CNT=7 /TID=Rn.9809.1 /TIER=FL /STK=1 /UG=Rn.9809 /LL=50599 /UG_GENE=Kcnj3 /DEF=Rattus norvegicus GIRK1KGA inwardly rectifying potassium channel mRNA, complete cds. /PROD=GIRK1KGA inwardly rectifying potassium channel /FL=gb:U01071.1 gb:U09243.1 gb:U01141.1 gb:NM_031610.1 gb:L25264.1 U09243 potassium inwardly-rectifying channel, subfamily J, member 3 Kcnj3 50599 NM_031610 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0051602 // response to electrical stimulus // inferred from expression pattern 0009897 // external side of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030315 // T-tubule // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // not recorded /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015467 // G-protein activated inward rectifier potassium channel activity // inferred from electronic annotation 1369742_at NM_031610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031610.1 /DB_XREF=gi:13928833 /GEN=Kcnj3 /FEA=FLmRNA /CNT=7 /TID=Rn.9809.1 /TIER=FL /STK=1 /UG=Rn.9809 /LL=50599 /DEF=Rattus norvegicus Potassium channel, inwarding rectifying, subfamily J, member 3 (Kcnj3), mRNA. /PROD=potassium inwardly-rectifying channel, subfamilyJ, member 3 /FL=gb:U01071.1 gb:U09243.1 gb:U01141.1 gb:NM_031610.1 gb:L25264.1 NM_031610 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0051602 // response to electrical stimulus // inferred from expression pattern 0009897 // external side of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030315 // T-tubule // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0015467 // G-protein activated inward rectifier potassium channel activity // inferred from electronic annotation 1369743_a_at U32497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U32497.1 /DB_XREF=gi:1161344 /FEA=FLmRNA /CNT=6 /TID=Rn.7176.1 /TIER=FL /STK=1 /UG=Rn.7176 /LL=29659 /UG_GENE=P2rx4 /DEF=Rattus norvegicus neuronal P2X4 ATP-gated channel subunit mRNA, complete cds. /PROD=P2X4 ATP-gated channel subunit /FL=gb:U32497.1 gb:NM_031594.1 gb:U47031.1 U32497 purinergic receptor P2X, ligand-gated ion channel 4 P2rx4 29659 NM_031594 0002028 // regulation of sodium ion transport // inferred from direct assay /// 0006809 // nitric oxide biosynthetic process // inferred from electronic annotation /// 0006809 // nitric oxide biosynthetic process // not recorded /// 0006810 // transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008217 // regulation of blood pressure // not recorded /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from electronic annotation /// 0010524 // positive regulation of calcium ion transport into cytosol // not recorded /// 0010614 // negative regulation of cardiac muscle hypertrophy // inferred from electronic annotation /// 0010614 // negative regulation of cardiac muscle hypertrophy // not recorded /// 0019228 // regulation of action potential in neuron // inferred from direct assay /// 0019233 // sensory perception of pain // inferred from mutant phenotype /// 0033198 // response to ATP // inferred from electronic annotation /// 0033198 // response to ATP // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0034405 // response to fluid shear stress // inferred from electronic annotation /// 0034405 // response to fluid shear stress // not recorded /// 0042311 // vasodilation // inferred from electronic annotation /// 0042311 // vasodilation // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0050850 // positive regulation of calcium-mediated signaling // inferred from electronic annotation /// 0050850 // positive regulation of calcium-mediated signaling // not recorded /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051899 // membrane depolarization // not recorded /// 0051899 // membrane depolarization // inferred from electronic annotation /// 0055117 // regulation of cardiac muscle contraction // inferred from electronic annotation /// 0055117 // regulation of cardiac muscle contraction // not recorded /// 0055119 // relaxation of cardiac muscle // inferred from electronic annotation /// 0055119 // relaxation of cardiac muscle // not recorded /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded 0005886 // plasma membrane // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030054 // cell junction // not recorded /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded /// 0045202 // synapse // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0001614 // purinergic nucleotide receptor activity // inferred from direct assay /// 0001614 // purinergic nucleotide receptor activity // not recorded /// 0001614 // purinergic nucleotide receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004931 // extracellular ATP-gated cation channel activity // inferred from direct assay /// 0004931 // extracellular ATP-gated cation channel activity // not recorded /// 0004931 // extracellular ATP-gated cation channel activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from direct assay /// 0005524 // ATP binding // inferred by curator /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from direct assay /// 0045296 // cadherin binding // inferred from electronic annotation /// 0045296 // cadherin binding // not recorded 1369744_at AF221622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF221622.1 /DB_XREF=gi:7008169 /FEA=FLmRNA /CNT=6 /TID=Rn.10429.1 /TIER=FL /STK=1 /UG=Rn.10429 /LL=24826 /UG_GENE=Tg /DEF=Rattus norvegicus strain F344 thyroglobulin mRNA, complete cds. /PROD=thyroglobulin /FL=gb:AB035201.1 gb:NM_030988.1 gb:AF221622.1 AF221622 thyroglobulin Tg 24826 NM_030988 0006590 // thyroid hormone generation // inferred from direct assay /// 0006590 // thyroid hormone generation // traceable author statement /// 0009268 // response to pH // inferred from direct assay /// 0015705 // iodide transport // inferred from electronic annotation /// 0015705 // iodide transport // not recorded /// 0031641 // regulation of myelination // inferred from electronic annotation /// 0031641 // regulation of myelination // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0042403 // thyroid hormone metabolic process // not recorded /// 0042403 // thyroid hormone metabolic process // inferred from electronic annotation /// 0042446 // hormone biosynthetic process // inferred from electronic annotation /// 0045056 // transcytosis // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005179 // hormone activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction /// 0051087 // chaperone binding // inferred from physical interaction 1369745_at M91562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M91562.1 /DB_XREF=gi:205738 /GEN=NMDA receptor subtype 2B /FEA=FLmRNA /CNT=6 /TID=Rn.9711.1 /TIER=FL /STK=1 /UG=Rn.9711 /LL=24410 /DEF=Rattus norvegicus NMDA receptor subtype 2B mRNA, complete cds. /PROD=NMDA receptor subtype 2B /FL=gb:NM_012574.1 gb:U11419.1 gb:M91562.1 M91562 glutamate receptor, ionotropic, N-methyl D-aspartate 2B Grin2b 24410 NM_012574 0001101 // response to acid // inferred from expression pattern /// 0001508 // regulation of action potential // inferred from mutant phenotype /// 0001662 // behavioral fear response // inferred from electronic annotation /// 0001662 // behavioral fear response // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001964 // startle response // inferred from electronic annotation /// 0001964 // startle response // not recorded /// 0001967 // suckling behavior // inferred from electronic annotation /// 0001967 // suckling behavior // not recorded /// 0001975 // response to amphetamine // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0007165 // signal transduction // not recorded /// 0007268 // synaptic transmission // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007423 // sensory organ development // inferred from electronic annotation /// 0007423 // sensory organ development // not recorded /// 0007611 // learning or memory // traceable author statement /// 0007612 // learning // not recorded /// 0007612 // learning // inferred from electronic annotation /// 0007613 // memory // inferred from direct assay /// 0007613 // memory // not recorded /// 0007613 // memory // inferred from electronic annotation /// 0007616 // long-term memory // inferred from expression pattern /// 0008306 // associative learning // inferred from mutant phenotype /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009743 // response to carbohydrate stimulus // inferred from expression pattern /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0010042 // response to manganese ion // inferred from expression pattern /// 0010350 // cellular response to magnesium starvation // inferred from expression pattern /// 0010942 // positive regulation of cell death // inferred from direct assay /// 0010942 // positive regulation of cell death // inferred from mutant phenotype /// 0014049 // positive regulation of glutamate secretion // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014075 // response to amine stimulus // inferred from expression pattern /// 0021766 // hippocampus development // inferred from expression pattern /// 0021987 // cerebral cortex development // inferred from expression pattern /// 0032026 // response to magnesium ion // inferred from expression pattern /// 0033555 // multicellular organismal response to stress // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0034220 // ion transmembrane transport // not recorded /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from direct assay /// 0042220 // response to cocaine // inferred from expression pattern /// 0042596 // fear response // not recorded /// 0042596 // fear response // inferred from electronic annotation /// 0043113 // receptor clustering // inferred from direct assay /// 0043408 // regulation of MAPKKK cascade // inferred from mutant phenotype /// 0045471 // response to ethanol // inferred from expression pattern /// 0045471 // response to ethanol // not recorded /// 0045471 // response to ethanol // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // not recorded /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from mutant phenotype /// 0048266 // behavioral response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // not recorded /// 0048511 // rhythmic process // inferred from direct assay /// 0050806 // positive regulation of synaptic transmission // inferred from mutant phenotype /// 0050966 // detection of mechanical stimulus involved in sensory perception of pain // inferred from electronic annotation /// 0050966 // detection of mechanical stimulus involved in sensory perception of pain // not recorded /// 0051592 // response to calcium ion // inferred from expression pattern /// 0051597 // response to methylmercury // inferred from expression pattern /// 0051602 // response to electrical stimulus // inferred from expression pattern /// 0051707 // response to other organism // inferred from expression pattern /// 0060078 // regulation of postsynaptic membrane potential // not recorded /// 0060078 // regulation of postsynaptic membrane potential // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded /// 0060416 // response to growth hormone stimulus // inferred from expression pattern /// 0060992 // response to fungicide // inferred from expression pattern /// 0070588 // calcium ion transmembrane transport // not recorded /// 0071230 // cellular response to amino acid stimulus // inferred from expression pattern /// 0071287 // cellular response to manganese ion // inferred from expression pattern /// 0071359 // cellular response to dsRNA // inferred from expression pattern /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern /// 0071396 // cellular response to lipid // inferred from expression pattern /// 0071407 // cellular response to organic cyclic substance // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from mutant phenotype 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0008021 // synaptic vesicle // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // not recorded /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016600 // flotillin complex // inferred from physical interaction /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // inferred from direct assay /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // not recorded /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0030018 // Z disc // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030288 // outer membrane-bounded periplasmic space // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0042734 // presynaptic membrane // not recorded /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043083 // synaptic cleft // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // not recorded /// 0045202 // synapse // traceable author statement /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0045211 // postsynaptic membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from direct assay /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from direct assay /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // not recorded /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005215 // transporter activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from direct assay /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // not recorded /// 0005261 // cation channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0008144 // drug binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from direct assay /// 0016594 // glycine binding // inferred from electronic annotation /// 0016594 // glycine binding // not recorded /// 0031749 // D2 dopamine receptor binding // inferred from physical interaction /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction /// 0042165 // neurotransmitter binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0050839 // cell adhesion molecule binding // inferred from physical interaction 1369746_a_at AF147740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF147740.1 /DB_XREF=gi:6049253 /FEA=FLmRNA /CNT=1 /TID=Rn.48740.3 /TIER=FL /STK=1 /UG=Rn.48740 /LL=58978 /UG_GENE=Slc21a10 /DEF=Rattus norvegicus liver-specific organic anion transporter mRNA, complete cds. /PROD=liver-specific organic anion transporter /FL=gb:AF147740.1 AF147740 solute carrier organic anion transporter family, member 1b3 Slco1b3 58978 NM_031650 0001889 // liver development // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006857 // oligopeptide transport // inferred from direct assay /// 0015721 // bile acid and bile salt transport // inferred from direct assay /// 0015893 // drug transport // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033993 // response to lipid // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0046677 // response to antibiotic // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016323 // basolateral plasma membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0008514 // organic anion transmembrane transporter activity // traceable author statement /// 0015125 // bile acid transmembrane transporter activity // inferred from direct assay /// 0015125 // bile acid transmembrane transporter activity // not recorded /// 0015198 // oligopeptide transporter activity // inferred from direct assay /// 0015238 // drug transmembrane transporter activity // inferred from mutant phenotype 1369747_at U17261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U17261.1 /DB_XREF=gi:596059 /GEN=AT-2 /FEA=FLmRNA /CNT=5 /TID=Rn.37420.1 /TIER=FL /STK=1 /UG=Rn.37420 /LL=116632 /DEF=Rattus norvegicus arylamine N-acetyltransferase-2 (AT-2) mRNA, complete cds. /PROD=arylamine N-acetyltransferase-2 /FL=gb:NM_053854.1 gb:U17261.1 gb:U01348.1 U17261 N-acetyltransferase 1 (arylamine N-acetyltransferase) /// N-Acetyltransferase-2 (arylamine N-acetyltransferase) Nat1 /// Nat2 116631 /// 116632 NM_001037315 /// NM_001037316 /// NM_053853 /// NM_053854 0001889 // liver development // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0048565 // digestive tract development // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004060 // arylamine N-acetyltransferase activity // inferred from direct assay /// 0004060 // arylamine N-acetyltransferase activity // not recorded /// 0004060 // arylamine N-acetyltransferase activity // inferred from electronic annotation /// 0008080 // N-acetyltransferase activity // non-traceable author statement /// 0008080 // N-acetyltransferase activity // traceable author statement /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016407 // acetyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030371 // translation repressor activity // traceable author statement 1369748_at NM_133612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133612.1 /DB_XREF=gi:19424327 /GEN=Serpini2 /FEA=FLmRNA /CNT=5 /TID=Rn.54500.1 /TIER=FL /STK=1 /UG=Rn.54500 /LL=171149 /DEF=Rattus norvegicus serine (or cysteine) proteinase inhibitor, clade I (neuroserpin), member 2 (Serpini2), mRNA. /PROD=serine (or cysteine) proteinase inhibitor, cladeI (neuroserpin), member 2 /FL=gb:NM_133612.1 NM_133612 serine (or cysteine) peptidase inhibitor, clade I, member 2 Serpini2 171149 NM_001134409 0030155 // regulation of cell adhesion // inferred from direct assay 0004867 // serine-type endopeptidase inhibitor activity // inferred from direct assay /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation 1369749_a_at NM_012710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012710.1 /DB_XREF=gi:6981607 /GEN=Svs2 /FEA=FLmRNA /CNT=5 /TID=Rn.34331.1 /TIER=FL /STK=1 /UG=Rn.34331 /LL=25013 /DEF=Rattus norvegicus Seminal vesicle protein, secretion 2 (Svs2), mRNA. /PROD=seminal vesicle protein, secretion 2 /FL=gb:NM_012710.1 NM_012710 semenogelin I Semg1 25013 NM_012710 0009566 // fertilization // not recorded /// 0019953 // sexual reproduction // inferred from electronic annotation /// 0042628 // mating plug formation // inferred from electronic annotation /// 0048240 // sperm capacitation // not recorded 0001669 // acrosomal vesicle // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0043499 // eukaryotic cell surface binding // not recorded 1369750_at M10902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M10902.1 /DB_XREF=gi:207535 /FEA=FLmRNA /CNT=5 /TID=Rn.9966.1 /TIER=FL /STK=1 /UG=Rn.9966 /LL=25653 /UG_GENE=Tshb /UG_TITLE=Thyroid stimulating hormone, beta subunit /DEF=Rat thyrotropin-beta-subunit (TSH-Beta) mRNA, complete cds. /FL=gb:NM_013116.1 gb:M10902.1 M10902 thyroid stimulating hormone, beta Tshb 25653 NM_013116 0033189 // response to vitamin A // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // traceable author statement /// 0005179 // hormone activity // inferred from electronic annotation 1369751_at NM_013047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013047.1 /DB_XREF=gi:7110728 /GEN=Trhr /FEA=FLmRNA /CNT=6 /TID=Rn.9962.1 /TIER=FL /STK=1 /UG=Rn.9962 /LL=25570 /DEF=Rattus norvegicus Thyrotropin releasing hormone receptor (Trhr), mRNA. /PROD=thyrotropin releasing hormone receptor /FL=gb:NM_013047.1 gb:D17469.1 gb:M90308.1 NM_013047 thyrotropin releasing hormone receptor Trhr 25570 NM_013047 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0090073 // positive regulation of protein homodimerization activity // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004997 // thyrotropin-releasing hormone receptor activity // inferred from direct assay /// 0004997 // thyrotropin-releasing hormone receptor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay 1369752_a_at J04446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J04446.1 /DB_XREF=gi:203642 /FEA=FLmRNA /CNT=6 /TID=Rn.11046.2 /TIER=FL /STK=5 /UG=Rn.11046 /LL=25050 /UG_GENE=Camk4 /UG_TITLE=Calmodulin-dependent protein kinase IV /DEF=Rat calspermin mRNA, complete cds. /FL=gb:J04446.1 J04446 calcium/calmodulin-dependent protein kinase IV Camk4 25050 NM_012727 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007270 // nerve-nerve synaptic transmission // inferred from electronic annotation /// 0007270 // nerve-nerve synaptic transmission // not recorded /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from direct assay /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation 1369753_at M63334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M63334.1 /DB_XREF=gi:203264 /FEA=FLmRNA /CNT=5 /TID=Rn.11046.1 /TIER=ConsEnd /STK=0 /UG=Rn.11046 /LL=25050 /UG_GENE=Camk4 /DEF=R.norvegicus calmodulin-dependent protein kinase(CaM kinase-GR) mRNA, complete cds. /PROD=calmodulin-dependent protein kinase /FL=gb:M63334.1 gb:NM_012727.1 M63334 calcium/calmodulin-dependent protein kinase IV Camk4 25050 NM_012727 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007270 // nerve-nerve synaptic transmission // inferred from electronic annotation /// 0007270 // nerve-nerve synaptic transmission // not recorded /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from direct assay /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation 1369754_a_at NM_053295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053295.1 /DB_XREF=gi:16757991 /GEN=Cast /FEA=FLmRNA /CNT=5 /TID=Rn.10882.1 /TIER=FL /STK=1 /UG=Rn.10882 /LL=25403 /DEF=Rattus norvegicus Calpastatin (Cast), mRNA. /PROD=calpastatin (probably multiple splicingproducts) /FL=gb:AF346598.1 gb:NM_053295.1 NM_053295 calpastatin Cast 25403 NM_001033715 /// NM_001033716 /// NM_053295 0007520 // myoblast fusion // inferred from expression pattern /// 0042176 // regulation of protein catabolic process // traceable author statement /// 0043086 // negative regulation of catalytic activity // inferred from direct assay 0002020 // protease binding // inferred by curator /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0010859 // calcium-dependent cysteine-type endopeptidase inhibitor activity // inferred from direct assay /// 0010859 // calcium-dependent cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1369755_at AF106624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF106624.1 /DB_XREF=gi:4768611 /FEA=FLmRNA /CNT=5 /TID=Rn.42869.1 /TIER=FL /STK=1 /UG=Rn.42869 /LL=64544 /UG_GENE=AF106624 /DEF=Rattus norvegicus galactoside beta-1,3-glucuronyltransferase mRNA, complete cds. /PROD=galactoside beta-1,3-glucuronyltransferase /FL=gb:NM_022609.1 gb:AB010441.1 gb:AF106624.1 AF106624 beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S) B3gat2 64544 NM_022609 0016051 // carbohydrate biosynthetic process // inferred from expression pattern /// 0016051 // carbohydrate biosynthetic process // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0015018 // galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity // inferred from direct assay /// 0015018 // galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity // inferred from mutant phenotype /// 0015018 // galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369756_a_at AF210250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF210250.1 /DB_XREF=gi:6644383 /FEA=FLmRNA /CNT=4 /TID=Rn.11114.1 /TIER=FL /STK=1 /UG=Rn.11114 /LL=84484 /UG_GENE=Slc4a4 /DEF=Rattus norvegicus sodium bicarbonate cotransporter mRNA, complete cds. /PROD=sodium bicarbonate cotransporter /FL=gb:AF210250.1 gb:NM_053424.1 gb:AF107265.1 gb:AF254802.1 AF210250 solute carrier family 4 (anion exchanger), member 4 Slc4a4 84484 NM_053424 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // not recorded /// 0006820 // anion transport // inferred from electronic annotation /// 0006885 // regulation of pH // traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005452 // inorganic anion exchanger activity // inferred from electronic annotation /// 0008509 // anion transmembrane transporter activity // inferred from electronic annotation /// 0008510 // sodium:bicarbonate symporter activity // traceable author statement /// 0015293 // symporter activity // inferred from electronic annotation 1369757_at NM_019312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019312.1 /DB_XREF=gi:9506820 /GEN=Itpkb /FEA=FLmRNA /CNT=4 /TID=Rn.44632.1 /TIER=FL /STK=1 /UG=Rn.44632 /LL=54260 /DEF=Rattus norvegicus Inositol 1,4,5-trisphosphate 3-kinase B (Itpkb), mRNA. /PROD=Inositol 1,4,5-trisphosphate 3-kinase B /FL=gb:NM_019312.1 NM_019312 inositol 1,4,5-trisphosphate 3-kinase B Itpkb 54260 NM_019312 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000165 // MAPKKK cascade // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0016310 // phosphorylation // not recorded /// 0030217 // T cell differentiation // inferred from electronic annotation /// 0030217 // T cell differentiation // not recorded /// 0045059 // positive thymic T cell selection // inferred from electronic annotation /// 0045059 // positive thymic T cell selection // not recorded /// 0045061 // thymic T cell selection // not recorded /// 0045061 // thymic T cell selection // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0046638 // positive regulation of alpha-beta T cell differentiation // inferred from electronic annotation /// 0046638 // positive regulation of alpha-beta T cell differentiation // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008440 // inositol trisphosphate 3-kinase activity // inferred from electronic annotation /// 0008440 // inositol trisphosphate 3-kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1369758_at U36771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U36771.2 /DB_XREF=gi:4481754 /FEA=FLmRNA /CNT=4 /TID=Rn.44456.1 /TIER=FL /STK=1 /UG=Rn.44456 /LL=29653 /UG_GENE=Gpam /DEF=Rattus norvegicus sn-glycerol 3-phosphate acyltransferase mRNA, nuclear gene encoding mitochondrial protein, complete cds. /PROD=sn-glycerol 3-phosphate acyltransferase /FL=gb:U36771.2 gb:NM_017274.1 gb:AF021348.1 U36771 glycerol-3-phosphate acyltransferase, mitochondrial Gpam 29653 NM_017274 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // not recorded /// 0006637 // acyl-CoA metabolic process // inferred from electronic annotation /// 0006637 // acyl-CoA metabolic process // not recorded /// 0006641 // triglyceride metabolic process // not recorded /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006650 // glycerophospholipid metabolic process // inferred from electronic annotation /// 0006650 // glycerophospholipid metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from electronic annotation /// 0009749 // response to glucose stimulus // not recorded /// 0009750 // response to fructose stimulus // inferred from expression pattern /// 0010867 // positive regulation of triglyceride biosynthetic process // inferred from direct assay /// 0014823 // response to activity // inferred from direct assay /// 0019432 // triglyceride biosynthetic process // not recorded /// 0019432 // triglyceride biosynthetic process // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from direct assay /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0042104 // positive regulation of activated T cell proliferation // inferred from electronic annotation /// 0042104 // positive regulation of activated T cell proliferation // not recorded /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0050707 // regulation of cytokine secretion // inferred from electronic annotation /// 0050707 // regulation of cytokine secretion // not recorded /// 0051607 // defense response to virus // inferred from electronic annotation /// 0051607 // defense response to virus // not recorded /// 0055089 // fatty acid homeostasis // inferred from electronic annotation /// 0055089 // fatty acid homeostasis // not recorded /// 0055091 // phospholipid homeostasis // inferred from electronic annotation /// 0055091 // phospholipid homeostasis // not recorded /// 0070236 // negative regulation of activation-induced cell death of T cells // inferred from electronic annotation /// 0070236 // negative regulation of activation-induced cell death of T cells // not recorded /// 0070970 // interleukin-2 secretion // inferred from electronic annotation /// 0070970 // interleukin-2 secretion // not recorded 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from direct assay 0004366 // glycerol-3-phosphate O-acyltransferase activity // inferred from direct assay /// 0004366 // glycerol-3-phosphate O-acyltransferase activity // not recorded /// 0004366 // glycerol-3-phosphate O-acyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1369759_at AB000729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB000729.1 /DB_XREF=gi:1816432 /FEA=FLmRNA /CNT=4 /TID=Rn.10224.1 /TIER=FL /STK=1 /UG=Rn.10224 /LL=25552 /UG_GENE=Slc5a1 /DEF=Rattus norvegicus mRNA for Naglucose cotransporter, complete cds. /PROD=Naglucose cotransporter /FL=gb:NM_013033.1 gb:U03120.1 gb:AB000729.1 AB000729 solute carrier family 5 (sodium/glucose cotransporter), member 1 Slc5a1 25552 NM_013033 0001656 // metanephros development // not recorded /// 0001951 // intestinal D-glucose absorption // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0015758 // glucose transport // not recorded /// 0015758 // glucose transport // traceable author statement /// 0015758 // glucose transport // inferred from electronic annotation /// 0035428 // hexose transmembrane transport // not recorded /// 0050892 // intestinal absorption // not recorded /// 0050892 // intestinal absorption // traceable author statement /// 0050892 // intestinal absorption // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0005903 // brush border // not recorded /// 0005903 // brush border // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0005355 // glucose transmembrane transporter activity // not recorded /// 0005355 // glucose transmembrane transporter activity // inferred from electronic annotation /// 0005412 // glucose:sodium symporter activity // inferred from direct assay /// 0005412 // glucose:sodium symporter activity // not recorded /// 0005412 // glucose:sodium symporter activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015293 // symporter activity // inferred from electronic annotation 1369760_a_at AF042058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF042058.1 /DB_XREF=gi:2801690 /GEN=ERbeta /FEA=FLmRNA /CNT=4 /TID=Rn.37460.1 /TIER=FL /STK=1 /UG=Rn.37460 /LL=25149 /DEF=Rattus norvegicus estrogen receptor beta1 (ERbeta) mRNA, complete cds. /PROD=estrogen receptor beta1 /FL=gb:U57439.1 gb:AF042058.1 gb:NM_012754.1 AF042058 estrogen receptor 2 (ER beta) Esr2 25149 NM_012754 0001541 // ovarian follicle development // not recorded /// 0001541 // ovarian follicle development // inferred from electronic annotation /// 0001662 // behavioral fear response // inferred from direct assay /// 0001764 // neuron migration // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0007611 // learning or memory // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0030520 // estrogen receptor signaling pathway // not recorded /// 0030520 // estrogen receptor signaling pathway // traceable author statement /// 0030520 // estrogen receptor signaling pathway // inferred from electronic annotation /// 0033574 // response to testosterone stimulus // inferred from mutant phenotype /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // inferred from direct assay /// 0043526 // neuroprotection // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045885 // positive regulation of survival gene product expression // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048521 // negative regulation of behavior // inferred from direct assay /// 0050680 // negative regulation of epithelial cell proliferation // inferred from direct assay /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0060065 // uterus development // not recorded /// 0060065 // uterus development // inferred from electronic annotation /// 0060068 // vagina development // not recorded /// 0060068 // vagina development // inferred from electronic annotation /// 0060740 // prostate gland epithelium morphogenesis // not recorded /// 0060740 // prostate gland epithelium morphogenesis // inferred from electronic annotation /// 0060743 // epithelial cell maturation involved in prostate gland development // not recorded /// 0060743 // epithelial cell maturation involved in prostate gland development // inferred from electronic annotation /// 0060766 // negative regulation of androgen receptor signaling pathway // not recorded /// 0060766 // negative regulation of androgen receptor signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005496 // steroid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0030284 // estrogen receptor activity // inferred from direct assay /// 0030284 // estrogen receptor activity // inferred from mutant phenotype /// 0030284 // estrogen receptor activity // traceable author statement /// 0030528 // transcription regulator activity // traceable author statement /// 0042562 // hormone binding // inferred from mutant phenotype /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369761_at X12658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X12658.1 /DB_XREF=gi:56218 /FEA=FLmRNA /CNT=4 /TID=Rn.10445.1 /TIER=FL /STK=1 /UG=Rn.10445 /LL=25517 /UG_GENE=Pou1f1 /UG_TITLE=Pituary specific transcription factor 1 (growth hormone factor 1) /DEF=Rat growth-hormone factor 1 (rGHF-1) mRNA, complete cds. /FL=gb:X12658.1 gb:NM_013008.1 gb:M23253.1 X12658 POU class 1 homeobox 1 Pou1f1 25517 NM_013008 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 0001708 // cell fate specification // inferred from electronic annotation /// 0001708 // cell fate specification // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008340 // determination of adult lifespan // not recorded /// 0008340 // determination of adult lifespan // inferred from electronic annotation /// 0021983 // pituitary gland development // not recorded /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0021984 // adenohypophysis development // inferred from mutant phenotype /// 0030183 // B cell differentiation // not recorded /// 0030183 // B cell differentiation // inferred from electronic annotation /// 0032962 // positive regulation of inositol trisphosphate biosynthetic process // not recorded /// 0032962 // positive regulation of inositol trisphosphate biosynthetic process // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043567 // regulation of insulin-like growth factor receptor signaling pathway // not recorded /// 0043567 // regulation of insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0051169 // nuclear transport // inferred from mutant phenotype /// 0060126 // somatotropin secreting cell differentiation // not recorded /// 0060126 // somatotropin secreting cell differentiation // inferred from electronic annotation /// 0060133 // somatotropin secreting cell development // not recorded /// 0060133 // somatotropin secreting cell development // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003714 // transcription corepressor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1369762_at NM_013008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013008.1 /DB_XREF=gi:6981379 /GEN=Pou1f1 /FEA=FLmRNA /CNT=4 /TID=Rn.10445.1 /TIER=FL /STK=1 /UG=Rn.10445 /LL=25517 /DEF=Rattus norvegicus Pituary specific transcription factor 1 (growth hormone factor 1) (Pou1f1), mRNA. /PROD=pituary specific transcription factor 1 (growthhormone factor 1) /FL=gb:X12658.1 gb:NM_013008.1 gb:M23253.1 NM_013008 POU class 1 homeobox 1 Pou1f1 25517 NM_013008 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 0001708 // cell fate specification // inferred from electronic annotation /// 0001708 // cell fate specification // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008340 // determination of adult lifespan // not recorded /// 0008340 // determination of adult lifespan // inferred from electronic annotation /// 0021983 // pituitary gland development // not recorded /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0021984 // adenohypophysis development // inferred from mutant phenotype /// 0030183 // B cell differentiation // not recorded /// 0030183 // B cell differentiation // inferred from electronic annotation /// 0032962 // positive regulation of inositol trisphosphate biosynthetic process // not recorded /// 0032962 // positive regulation of inositol trisphosphate biosynthetic process // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043567 // regulation of insulin-like growth factor receptor signaling pathway // not recorded /// 0043567 // regulation of insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0051169 // nuclear transport // inferred from mutant phenotype /// 0060126 // somatotropin secreting cell differentiation // not recorded /// 0060126 // somatotropin secreting cell differentiation // inferred from electronic annotation /// 0060133 // somatotropin secreting cell development // not recorded /// 0060133 // somatotropin secreting cell development // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003714 // transcription corepressor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1369763_at NM_022928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022928.1 /DB_XREF=gi:12621083 /GEN=Gprk2l /FEA=FLmRNA /CNT=4 /TID=Rn.54517.1 /TIER=FL /STK=1 /UG=Rn.54517 /LL=59077 /DEF=Rattus norvegicus G protein-coupled receptor kinase 2, groucho gene related (Drosophila) (Gprk2l), mRNA. /PROD=G protein-coupled receptor kinase 4 /FL=gb:NM_022928.1 NM_022928 G protein-coupled receptor kinase 4 Grk4 59077 NM_022928 0002029 // desensitization of G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0002031 // G-protein coupled receptor internalization // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005938 // cell cortex // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004703 // G-protein coupled receptor kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0050254 // rhodopsin kinase activity // inferred from direct assay 1369764_at NM_012516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012516.1 /DB_XREF=gi:6978576 /GEN=C4bpa /FEA=FLmRNA /CNT=4 /TID=Rn.10408.1 /TIER=FL /STK=1 /UG=Rn.10408 /LL=24235 /DEF=Rattus norvegicus Complement component 4 binding protein, alpha (C4bpa), mRNA. /PROD=complement component 4 binding protein, alpha /FL=gb:NM_012516.1 NM_012516 complement component 4 binding protein, alpha C4bpa 24235 NM_012516 0006955 // immune response // traceable author statement /// 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0001848 // complement binding // traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1369765_at NM_022384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022384.1 /DB_XREF=gi:11693147 /GEN=Ascl1 /FEA=FLmRNA /CNT=4 /TID=Rn.32936.1 /TIER=FL /STK=1 /UG=Rn.32936 /LL=64186 /DEF=Rattus norvegicus achaete-scute complex (Drosophila) homolog-like 1 (Ascl1), mRNA. /PROD=achaete-scute complex (Drosophila) homolog-like1 /FL=gb:NM_022384.1 NM_022384 achaete-scute complex homolog 1 (Drosophila) Ascl1 64186 NM_022384 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0003359 // noradrenergic neuron fate commitment // inferred from electronic annotation /// 0003359 // noradrenergic neuron fate commitment // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0007219 // Notch signaling pathway // not recorded /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007399 // nervous system development // inferred from direct assay /// 0007399 // nervous system development // inferred from electronic annotation /// 0007400 // neuroblast fate determination // inferred from electronic annotation /// 0007400 // neuroblast fate determination // not recorded /// 0007405 // neuroblast proliferation // inferred from electronic annotation /// 0007405 // neuroblast proliferation // not recorded /// 0008593 // regulation of Notch signaling pathway // not recorded /// 0008593 // regulation of Notch signaling pathway // inferred from electronic annotation /// 0010001 // glial cell differentiation // not recorded /// 0010001 // glial cell differentiation // inferred from electronic annotation /// 0010226 // response to lithium ion // inferred from expression pattern /// 0010468 // regulation of gene expression // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0014003 // oligodendrocyte development // inferred from electronic annotation /// 0014003 // oligodendrocyte development // not recorded /// 0021527 // spinal cord association neuron differentiation // inferred from electronic annotation /// 0021527 // spinal cord association neuron differentiation // not recorded /// 0021529 // spinal cord oligodendrocyte cell differentiation // not recorded /// 0021529 // spinal cord oligodendrocyte cell differentiation // inferred from electronic annotation /// 0021530 // spinal cord oligodendrocyte cell fate specification // inferred from electronic annotation /// 0021530 // spinal cord oligodendrocyte cell fate specification // not recorded /// 0021779 // oligodendrocyte cell fate commitment // inferred from electronic annotation /// 0021779 // oligodendrocyte cell fate commitment // not recorded /// 0021879 // forebrain neuron differentiation // inferred from direct assay /// 0021892 // cerebral cortex GABAergic interneuron differentiation // inferred from electronic annotation /// 0021892 // cerebral cortex GABAergic interneuron differentiation // not recorded /// 0021954 // central nervous system neuron development // inferred from electronic annotation /// 0021954 // central nervous system neuron development // not recorded /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0021987 // cerebral cortex development // not recorded /// 0022008 // neurogenesis // not recorded /// 0022008 // neurogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032526 // response to retinoic acid // not recorded /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032582 // negative regulation of gene-specific transcription // inferred from electronic annotation /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from direct assay /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from direct assay /// 0045747 // positive regulation of Notch signaling pathway // inferred from electronic annotation /// 0045747 // positive regulation of Notch signaling pathway // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048663 // neuron fate commitment // not recorded /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048665 // neuron fate specification // inferred from electronic annotation /// 0048665 // neuron fate specification // not recorded /// 0048666 // neuron development // not recorded /// 0048666 // neuron development // inferred from electronic annotation /// 0048709 // oligodendrocyte differentiation // not recorded /// 0048709 // oligodendrocyte differentiation // inferred from electronic annotation /// 0050769 // positive regulation of neurogenesis // inferred from electronic annotation /// 0050769 // positive regulation of neurogenesis // not recorded /// 0051593 // response to folic acid // inferred from expression pattern /// 0060163 // subpallium neuron fate commitment // inferred from electronic annotation /// 0060163 // subpallium neuron fate commitment // not recorded /// 0060165 // regulation of timing of subpallium neuron differentiation // inferred from electronic annotation /// 0060165 // regulation of timing of subpallium neuron differentiation // not recorded /// 0060166 // olfactory pit development // inferred from electronic annotation /// 0060166 // olfactory pit development // not recorded /// 0061100 // lung neuroendocrine cell differentiation // inferred from electronic annotation /// 0061100 // lung neuroendocrine cell differentiation // not recorded /// 0061102 // stomach neuroendocrine cell differentiation // inferred from electronic annotation /// 0061102 // stomach neuroendocrine cell differentiation // not recorded /// 0061103 // carotid body glomus cell differentiation // inferred from electronic annotation /// 0061103 // carotid body glomus cell differentiation // not recorded /// 0061104 // adrenal chromaffin cell differentiation // inferred from electronic annotation /// 0061104 // adrenal chromaffin cell differentiation // not recorded /// 0070849 // response to epidermal growth factor stimulus // inferred from expression pattern /// 0071259 // cellular response to magnetism // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043425 // bHLH transcription factor binding // inferred from electronic annotation /// 0043425 // bHLH transcription factor binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0070888 // E-box binding // inferred from electronic annotation /// 0070888 // E-box binding // not recorded 1369766_at U48858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U48858.1 /DB_XREF=gi:1236076 /FEA=FLmRNA /CNT=4 /TID=Rn.10264.1 /TIER=FL /STK=1 /UG=Rn.10264 /LL=81752 /UG_GENE=Ptger2 /DEF=Rattus norvegicus prostaglandin E receptor EP2 subtype mRNA, complete cds. /PROD=prostaglandin E receptor EP2 subtype /FL=gb:U48858.1 gb:U94708.1 gb:NM_031088.1 U48858 prostaglandin E receptor 2 (subtype EP2) Ptger2 81752 NM_031088 0001501 // skeletal system development // non-traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004957 // prostaglandin E receptor activity // inferred from direct assay /// 0004957 // prostaglandin E receptor activity // inferred from electronic annotation 1369767_a_at U40602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U40602.1 /DB_XREF=gi:2772579 /FEA=FLmRNA /CNT=4 /TID=Rn.10820.1 /TIER=FL /STK=1 /UG=Rn.10820 /LL=29747 /UG_GENE=Kcnmb1 /DEF=Rattus norvegicus rat-slowpoke-beta mRNA, complete cds. /PROD=Rat-slowpoke-beta /FL=gb:AF020712.1 gb:U54498.1 gb:NM_019273.1 gb:U40602.1 U40602 potassium large conductance calcium-activated channel, subfamily M, beta member 1 Kcnmb1 29747 NM_019273 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0051592 // response to calcium ion // inferred from direct assay 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0015269 // calcium-activated potassium channel activity // not recorded /// 0015269 // calcium-activated potassium channel activity // traceable author statement /// 0015269 // calcium-activated potassium channel activity // inferred from electronic annotation /// 0015459 // potassium channel regulator activity // inferred from direct assay 1369768_at NM_133285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133285.1 /DB_XREF=gi:18959217 /GEN=H1f4 /FEA=FLmRNA /CNT=4 /TID=Rn.37879.1 /TIER=FL /STK=1 /UG=Rn.37879 /LL=29239 /DEF=Rattus norvegicus H1 histone family, member 4 (H1f4), mRNA. /PROD=H1 histone family, member 4 /FL=gb:NM_133285.1 NM_133285 histone cluster 1, H1d Hist1h1d 201097 NM_133285 0006334 // nucleosome assembly // inferred from electronic annotation /// 0016584 // nucleosome positioning // not recorded /// 0030261 // chromosome condensation // traceable author statement 0000785 // chromatin // traceable author statement /// 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded 1369769_at M36461 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M36461.1 /DB_XREF=gi:203976 /FEA=FLmRNA /CNT=4 /TID=Rn.9734.1 /TIER=FL /STK=1 /UG=Rn.9734 /LL=25471 /UG_GENE=Kcne1 /UG_TITLE=Potassium (K+) channel protein, slowly activating (Isk) /DEF=Rat delayed-rectifier-type K+ channel mRNA, complete cds. /FL=gb:NM_012973.1 gb:M36461.1 gb:M22412.1 M36461 potassium voltage-gated channel, Isk-related subfamily, member 1 Kcne1 25471 NM_012973 0002070 // epithelial cell maturation // inferred from electronic annotation /// 0002070 // epithelial cell maturation // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // not recorded /// 0051899 // membrane depolarization // inferred from electronic annotation /// 0051899 // membrane depolarization // not recorded 0005605 // basal lamina // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0008076 // voltage-gated potassium channel complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from mutant phenotype /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005251 // delayed rectifier potassium channel activity // inferred from mutant phenotype /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0015459 // potassium channel regulator activity // inferred from electronic annotation /// 0015459 // potassium channel regulator activity // not recorded 1369770_at NM_012719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012719.1 /DB_XREF=gi:6981583 /GEN=Sstr1 /FEA=FLmRNA /CNT=5 /TID=Rn.42915.1 /TIER=FL /STK=1 /UG=Rn.42915 /LL=25033 /DEF=Rattus norvegicus Somatostatin receptor subtype 1 (Sstr1), mRNA. /PROD=somatostatin receptor subtype 1 /FL=gb:NM_012719.1 gb:M97656.1 NM_012719 somatostatin receptor 1 Sstr1 25033 NM_012719 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007215 // glutamate signaling pathway // not recorded /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007268 // synaptic transmission // not recorded /// 0007283 // spermatogenesis // inferred from expression pattern /// 0021549 // cerebellum development // inferred from expression pattern /// 0030217 // T cell differentiation // non-traceable author statement /// 0030900 // forebrain development // inferred from expression pattern /// 0042594 // response to starvation // inferred from expression pattern /// 0071392 // cellular response to estradiol stimulus // inferred from expression pattern 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004994 // somatostatin receptor activity // inferred from mutant phenotype /// 0004994 // somatostatin receptor activity // not recorded /// 0004994 // somatostatin receptor activity // inferred from electronic annotation 1369771_at NM_012969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012969.1 /DB_XREF=gi:6981105 /GEN=Irs1 /FEA=FLmRNA /CNT=4 /TID=Rn.10476.1 /TIER=FL /STK=1 /UG=Rn.10476 /LL=25467 /DEF=Rattus norvegicus Insulin receptor substrate 1 (Irs1), mRNA. /PROD=insulin receptor substrate 1 /FL=gb:NM_012969.1 NM_012969 insulin receptor substrate 1 Irs1 25467 NM_012969 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // inferred from direct assay /// 0008286 // insulin receptor signaling pathway // not recorded /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0010907 // positive regulation of glucose metabolic process // inferred from electronic annotation /// 0010907 // positive regulation of glucose metabolic process // not recorded /// 0014065 // phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014065 // phosphoinositide 3-kinase cascade // not recorded /// 0030073 // insulin secretion // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0030879 // mammary gland development // not recorded /// 0032000 // positive regulation of fatty acid beta-oxidation // inferred from electronic annotation /// 0032000 // positive regulation of fatty acid beta-oxidation // not recorded /// 0032868 // response to insulin stimulus // not recorded /// 0032868 // response to insulin stimulus // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0042327 // positive regulation of phosphorylation // inferred from direct assay /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0043491 // protein kinase B signaling cascade // inferred from electronic annotation /// 0043491 // protein kinase B signaling cascade // not recorded /// 0043552 // positive regulation of phosphoinositide 3-kinase activity // inferred from direct assay /// 0045725 // positive regulation of glycogen biosynthetic process // inferred from electronic annotation /// 0045725 // positive regulation of glycogen biosynthetic process // not recorded /// 0046326 // positive regulation of glucose import // inferred from electronic annotation /// 0046326 // positive regulation of glucose import // not recorded /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from mutant phenotype /// 0046628 // positive regulation of insulin receptor signaling pathway // inferred from mutant phenotype /// 0046676 // negative regulation of insulin secretion // inferred from mutant phenotype /// 0046676 // negative regulation of insulin secretion // not recorded /// 0046676 // negative regulation of insulin secretion // inferred from electronic annotation /// 0048009 // insulin-like growth factor receptor signaling pathway // not recorded /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0070094 // positive regulation of glucagon secretion // inferred from mutant phenotype /// 0090275 // negative regulation of somatostatin secretion // inferred from mutant phenotype 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from sequence or structural similarity /// 0005792 // microsome // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005899 // insulin receptor complex // inferred from mutant phenotype /// 0005901 // caveola // inferred from electronic annotation /// 0005901 // caveola // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0005010 // insulin-like growth factor receptor activity // inferred from mutant phenotype /// 0005068 // transmembrane receptor protein tyrosine kinase adaptor protein activity // inferred from mutant phenotype /// 0005069 // transmembrane receptor protein tyrosine kinase docking protein activity // inferred from mutant phenotype /// 0005080 // protein kinase C binding // inferred from physical interaction /// 0005158 // insulin receptor binding // inferred from mutant phenotype /// 0005158 // insulin receptor binding // not recorded /// 0005158 // insulin receptor binding // inferred from sequence or structural similarity /// 0005158 // insulin receptor binding // inferred from electronic annotation /// 0005159 // insulin-like growth factor receptor binding // inferred from physical interaction /// 0005159 // insulin-like growth factor receptor binding // not recorded /// 0005159 // insulin-like growth factor receptor binding // inferred from sequence or structural similarity /// 0005159 // insulin-like growth factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042169 // SH2 domain binding // inferred from physical interaction /// 0043548 // phosphoinositide 3-kinase binding // inferred from direct assay /// 0043548 // phosphoinositide 3-kinase binding // inferred from mutant phenotype /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction /// 0043548 // phosphoinositide 3-kinase binding // not recorded /// 0043548 // phosphoinositide 3-kinase binding // inferred from electronic annotation 1369772_at AW141210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141210 /DB_XREF=gi:6160990 /DB_XREF=EST291246 /CLONE=RGIBF81 /FEA=FLmRNA /CNT=4 /TID=Rn.32110.1 /TIER=ConsEnd /STK=0 /UG=Rn.32110 /LL=116509 /UG_GENE=Glyt1 /UG_TITLE=glycine transporter 1 /FL=gb:M95413.1 gb:NM_053818.1 gb:L13600.1 AW141210 solute carrier family 6 (neurotransmitter transporter, glycine), member 9 Slc6a9 116509 NM_053818 0003333 // amino acid transmembrane transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from electronic annotation /// 0015816 // glycine transport // not recorded 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005283 // sodium:amino acid symporter activity // inferred from electronic annotation /// 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0015187 // glycine transmembrane transporter activity // not recorded /// 0015187 // glycine transmembrane transporter activity // traceable author statement /// 0015293 // symporter activity // inferred from electronic annotation 1369773_at NM_017105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017105.1 /DB_XREF=gi:8392992 /GEN=Bmp3 /FEA=FLmRNA /CNT=4 /TID=Rn.53974.1 /TIER=FL /STK=1 /UG=Rn.53974 /LL=25667 /DEF=Rattus norvegicus Bone morphogenetic protein 3 (Bmp3), mRNA. /PROD=bone morphogenetic protein 3 /FL=gb:NM_017105.1 NM_017105 bone morphogenetic protein 3 Bmp3 25667 NM_017105 0001503 // ossification // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0040007 // growth // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0051216 // cartilage development // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0031988 // membrane-bounded vesicle // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation /// 0070700 // BMP receptor binding // inferred from electronic annotation /// 0070700 // BMP receptor binding // not recorded 1369774_at NM_053496 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053496.1 /DB_XREF=gi:16758251 /GEN=Cgn2 /FEA=FLmRNA /CNT=4 /TID=Rn.10054.1 /TIER=ConsEnd /STK=0 /UG=Rn.10054 /LL=85258 /DEF=Rattus norvegicus Cyclic nucleotide gated cation channel (Cgn2), mRNA. /PROD=Cyclic nucleotide gated cation channel /FL=gb:U12425.1 gb:U12623.1 gb:NM_053496.1 NM_053496 cyclic nucleotide gated channel alpha 4 Cnga4 85258 NM_053496 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0007608 // sensory perception of smell // not recorded /// 0050896 // response to stimulus // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0017071 // intracellular cyclic nucleotide activated cation channel complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005221 // intracellular cyclic nucleotide activated cation channel activity // inferred from direct assay /// 0030552 // cAMP binding // inferred from electronic annotation 1369775_at NM_022799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022799.1 /DB_XREF=gi:12248184 /GEN=Nucks /FEA=FLmRNA /CNT=4 /TID=Rn.21324.1 /TIER=FL /STK=1 /UG=Rn.21324 /LL=64709 /DEF=Rattus norvegicus nuclear ubiquitous casein kinase 2 (Nucks), mRNA. /PROD=nuclear ubiquitous casein kinase 2 /FL=gb:NM_022799.1 NM_022799 nuclear casein kinase and cyclin-dependent kinase substrate 1 Nucks1 64709 NM_022799 0051726 // regulation of cell cycle // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0003690 // double-stranded DNA binding // traceable author statement /// 0003697 // single-stranded DNA binding // traceable author statement 1369776_a_at AF060116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF060116.1 /DB_XREF=gi:3091151 /FEA=FLmRNA /CNT=3 /TID=Rn.14545.1 /TIER=FL /STK=1 /UG=Rn.14545 /LL=171093 /UG_GENE=ProSAP1 /DEF=Rattus norvegicus cortactin-binding protein 1 mRNA, complete cds. /PROD=cortactin-binding protein 1 /FL=gb:AF060116.1 gb:NM_133440.1 AF060116 SH3 and multiple ankyrin repeat domains 2 Shank2 171093 NM_001004133 /// NM_133440 /// NM_133441 /// NM_201350 0007420 // brain development // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from electronic annotation 1369777_a_at NM_133440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133440.1 /DB_XREF=gi:19263335 /GEN=ProSAP1 /FEA=FLmRNA /CNT=3 /TID=Rn.14545.1 /TIER=FL /STK=1 /UG=Rn.14545 /LL=171093 /DEF=Rattus norvegicus proline rich synapse associated protein 1 (ProSAP1), mRNA. /PROD=proline rich synapse associated protein 1 /FL=gb:AF060116.1 gb:NM_133440.1 NM_133440 SH3 and multiple ankyrin repeat domains 2 Shank2 171093 NM_001004133 /// NM_133440 /// NM_133441 /// NM_201350 0007420 // brain development // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from electronic annotation 1369778_at U53505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U53505.1 /DB_XREF=gi:1518957 /FEA=FLmRNA /CNT=3 /TID=Rn.10563.1 /TIER=FL /STK=1 /UG=Rn.10563 /LL=65162 /UG_GENE=Dio2 /DEF=Rattus norvegicus type II iodothyronine deiodinase mRNA, complete cds. /PROD=type II iodothyronine deiodinase /FL=gb:U53505.1 gb:NM_031720.2 U53505 deiodinase, iodothyronine, type II Dio2 65162 NM_031720 0006590 // thyroid hormone generation // inferred from direct assay /// 0009409 // response to cold // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0042403 // thyroid hormone metabolic process // inferred from direct assay /// 0042403 // thyroid hormone metabolic process // traceable author statement /// 0042404 // thyroid hormone catabolic process // inferred from electronic annotation /// 0042404 // thyroid hormone catabolic process // not recorded /// 0042446 // hormone biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004800 // thyroxine 5'-deiodinase activity // inferred from direct assay /// 0004800 // thyroxine 5'-deiodinase activity // not recorded /// 0004800 // thyroxine 5'-deiodinase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1369779_at NM_012983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012983.1 /DB_XREF=gi:6981241 /GEN=Myo1c /FEA=FLmRNA /CNT=3 /TID=Rn.10376.1 /TIER=FL /STK=1 /UG=Rn.10376 /LL=25485 /DEF=Rattus norvegicus myosin Ic (Myo1c), mRNA. /PROD=myosin Ic /FL=gb:NM_012983.1 NM_012983 myosin ID Myo1d 25485 NM_012983 0006810 // transport // not recorded 0001725 // stress fiber // not recorded /// 0005737 // cytoplasm // not recorded /// 0005790 // smooth endoplasmic reticulum // inferred from direct assay /// 0005902 // microvillus // not recorded /// 0005903 // brush border // not recorded /// 0009925 // basal plasma membrane // not recorded /// 0016328 // lateral plasma membrane // not recorded /// 0016459 // myosin complex // inferred from direct assay /// 0016459 // myosin complex // inferred from electronic annotation /// 0030673 // axolemma // inferred from direct assay /// 0031941 // filamentous actin // not recorded /// 0032420 // stereocilium // not recorded /// 0045160 // myosin I complex // not recorded 0000146 // microfilament motor activity // inferred from direct assay /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0030898 // actin-dependent ATPase activity // inferred from direct assay 1369780_at NM_053721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053721.1 /DB_XREF=gi:16758537 /GEN=Rasgrf2 /FEA=FLmRNA /CNT=3 /TID=Rn.66932.1 /TIER=FL /STK=1 /UG=Rn.66932 /LL=114513 /DEF=Rattus norvegicus RAS protein-specific guanine nucleotide-releasing factor 2 (Rasgrf2), mRNA. /PROD=RAS protein-specific guaninenucleotide-releasing factor 2 /FL=gb:NM_053721.1 NM_053721 RAS protein-specific guanine nucleotide-releasing factor 2 Rasgrf2 114513 NM_053721 0006915 // apoptosis // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369781_at U06832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U06832.1 /DB_XREF=gi:459657 /GEN=MGLUR7 /FEA=FLmRNA /CNT=3 /TID=Rn.10409.1 /TIER=FL /STK=1 /UG=Rn.10409 /LL=81672 /DEF=Rattus norvegicus Sprague-Dawley metabotropic glutamate receptor 7 (MGLUR7) mRNA, complete cds. /PROD=metabotropic glutamate receptor 7 /FL=gb:NM_031040.1 gb:U06832.1 gb:D16817.1 U06832 glutamate receptor, metabotropic 7 Grm7 81672 NM_031040 0001661 // conditioned taste aversion // not recorded /// 0001662 // behavioral fear response // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007194 // negative regulation of adenylate cyclase activity // not recorded /// 0007196 // inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway // inferred from direct assay /// 0007268 // synaptic transmission // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0007611 // learning or memory // traceable author statement /// 0007613 // memory // not recorded /// 0007614 // short-term memory // not recorded /// 0008306 // associative learning // not recorded /// 0014050 // negative regulation of glutamate secretion // inferred from direct assay /// 0019226 // transmission of nerve impulse // not recorded /// 0030534 // adult behavior // not recorded /// 0030818 // negative regulation of cAMP biosynthetic process // not recorded /// 0033555 // multicellular organismal response to stress // not recorded /// 0050877 // neurological system process // not recorded /// 0050896 // response to stimulus // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030425 // dendrite // not recorded /// 0032279 // asymmetric synapse // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from direct assay /// 0042734 // presynaptic membrane // not recorded /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay /// 0045202 // synapse // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0048786 // presynaptic active zone // inferred from direct assay 0001640 // adenylate cyclase inhibiting metabotropic glutamate receptor activity // inferred from direct assay /// 0001642 // group III metabotropic glutamate receptor activity // inferred from direct assay /// 0001642 // group III metabotropic glutamate receptor activity // not recorded /// 0001642 // group III metabotropic glutamate receptor activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // not recorded /// 0005246 // calcium channel regulator activity // not recorded /// 0005509 // calcium ion binding // not recorded /// 0005516 // calmodulin binding // inferred from physical interaction /// 0008066 // glutamate receptor activity // not recorded /// 0010855 // adenylate cyclase inhibitor activity // not recorded /// 0016595 // glutamate binding // inferred from direct assay /// 0016595 // glutamate binding // not recorded /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0070905 // serine binding // not recorded 1369782_a_at U44897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U44897.1 /DB_XREF=gi:1322028 /FEA=FLmRNA /CNT=3 /TID=Rn.3985.1 /TIER=FL /STK=1 /UG=Rn.3985 /LL=83535 /UG_GENE=Kcnj11 /DEF=Rattus norvegicus ATP-sensitive potassium channel mRNA, complete cds. /PROD=K-ATP channel /FL=gb:U44897.1 gb:AB043638.1 gb:NM_031358.2 U44897 potassium inwardly rectifying channel, subfamily J, member 11 Kcnj11 83535 NM_031358 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from direct assay /// 0006813 // potassium ion transport // inferred from mutant phenotype /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0010107 // potassium ion import // inferred from electronic annotation /// 0010107 // potassium ion import // not recorded /// 0033198 // response to ATP // inferred from electronic annotation /// 0033198 // response to ATP // not recorded /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0034765 // regulation of ion transmembrane transport // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0046676 // negative regulation of insulin secretion // inferred from electronic annotation /// 0046676 // negative regulation of insulin secretion // not recorded /// 0050796 // regulation of insulin secretion // not recorded /// 0050796 // regulation of insulin secretion // inferred from electronic annotation /// 0050877 // neurological system process // inferred from electronic annotation /// 0050877 // neurological system process // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008282 // ATP-sensitive potassium channel complex // inferred from direct assay /// 0008282 // ATP-sensitive potassium channel complex // not recorded /// 0008282 // ATP-sensitive potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030315 // T-tubule // inferred from direct assay /// 0042383 // sarcolemma // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0015272 // ATP-activated inward rectifier potassium channel activity // inferred from direct assay /// 0015272 // ATP-activated inward rectifier potassium channel activity // inferred from mutant phenotype /// 0015272 // ATP-activated inward rectifier potassium channel activity // not recorded /// 0015272 // ATP-activated inward rectifier potassium channel activity // inferred from electronic annotation 1369783_a_at U02319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U02319.1 /DB_XREF=gi:408388 /FEA=FLmRNA /CNT=2 /TID=Rn.37438.2 /TIER=FL /STK=1 /UG=Rn.37438 /LL=112400 /UG_GENE=Nrg1 /DEF=Rattus norvegicus clone ndf38 neu differentiation factor mRNA, complete cds. /PROD=neu differentiation factor /FL=gb:U02319.1 gb:U02323.1 U02319 neuregulin 1 Nrg1 112400 NM_031588 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000165 // MAPKKK cascade // not recorded /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007171 // activation of transmembrane receptor protein tyrosine kinase activity // not recorded /// 0007219 // Notch signaling pathway // not recorded /// 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007416 // synapse assembly // inferred from electronic annotation /// 0007416 // synapse assembly // not recorded /// 0007422 // peripheral nervous system development // inferred from electronic annotation /// 0007422 // peripheral nervous system development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007517 // muscle organ development // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008217 // regulation of blood pressure // inferred from expression pattern /// 0008283 // cell proliferation // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0010001 // glial cell differentiation // inferred from electronic annotation /// 0010001 // glial cell differentiation // not recorded /// 0010667 // negative regulation of cardiac muscle cell apoptosis // not recorded /// 0015758 // glucose transport // inferred from mutant phenotype /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030307 // positive regulation of cell growth // not recorded /// 0042060 // wound healing // not recorded /// 0042552 // myelination // inferred from expression pattern /// 0043497 // regulation of protein heterodimerization activity // not recorded /// 0043624 // cellular protein complex disassembly // not recorded /// 0045213 // neurotransmitter receptor metabolic process // inferred from electronic annotation /// 0045213 // neurotransmitter receptor metabolic process // not recorded /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // not recorded /// 0045785 // positive regulation of cell adhesion // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0051048 // negative regulation of secretion // not recorded /// 0051155 // positive regulation of striated muscle cell differentiation // not recorded /// 0055007 // cardiac muscle cell differentiation // not recorded /// 0055012 // ventricular cardiac muscle cell differentiation // not recorded /// 0060045 // positive regulation of cardiac muscle cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0003712 // transcription cofactor activity // not recorded /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005176 // ErbB-2 class receptor binding // inferred from electronic annotation /// 0005176 // ErbB-2 class receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0030296 // protein tyrosine kinase activator activity // not recorded /// 0043125 // ErbB-3 class receptor binding // inferred from mutant phenotype /// 0043125 // ErbB-3 class receptor binding // not recorded 1369784_at NM_019353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019353.1 /DB_XREF=gi:9507198 /GEN=Tpo /FEA=FLmRNA /CNT=3 /TID=Rn.9957.1 /TIER=FL /STK=1 /UG=Rn.9957 /LL=54314 /DEF=Rattus norvegicus Thyroid peroxidase (Tpo), mRNA. /PROD=Thyroid peroxidase /FL=gb:NM_019353.1 NM_019353 thyroid peroxidase Tpo 54314 NM_019353 0006590 // thyroid hormone generation // traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0042446 // hormone biosynthetic process // inferred from electronic annotation /// 0042744 // hydrogen peroxide catabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004447 // iodide peroxidase activity // traceable author statement /// 0004447 // iodide peroxidase activity // inferred from electronic annotation /// 0004601 // peroxidase activity // not recorded /// 0004601 // peroxidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369785_at NM_057198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057198.1 /DB_XREF=gi:17105351 /GEN=Ppat /FEA=FLmRNA /CNT=3 /TID=Rn.18690.1 /TIER=FL /STK=1 /UG=Rn.18690 /LL=117544 /DEF=Rattus norvegicus phosphoribosyl pyrophosphate amidotransferase (Ppat), mRNA. /PROD=phosphoribosyl pyrophosphate amidotransferase /FL=gb:NM_057198.1 NM_057198 phosphoribosyl pyrophosphate amidotransferase Ppat 117544 NM_057198 0006164 // purine nucleotide biosynthetic process // inferred from electronic annotation /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0007595 // lactation // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0009113 // purine base biosynthetic process // inferred from electronic annotation /// 0009116 // nucleoside metabolic process // inferred from electronic annotation /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0051289 // protein homotetramerization // inferred from direct assay /// 0060135 // maternal process involved in female pregnancy // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay 0004044 // amidophosphoribosyltransferase activity // inferred from direct assay /// 0004044 // amidophosphoribosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 1369786_at M22926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M22926.1 /DB_XREF=gi:202655 /FEA=FLmRNA /CNT=3 /TID=Rn.44293.1 /TIER=FL /STK=1 /UG=Rn.44293 /LL=53949 /UG_GENE=Chrm5 /UG_TITLE=muscarinic acetylcholine receptor M5 /DEF=Rat muscarinic acetylcholine receptor M5 mRNA, complete cds. /FL=gb:NM_017362.1 gb:M22926.1 M22926 cholinergic receptor, muscarinic 5 Chrm5 53949 NM_017362 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0015872 // dopamine transport // inferred from electronic annotation /// 0015872 // dopamine transport // not recorded /// 0019226 // transmission of nerve impulse // inferred from electronic annotation /// 0019226 // transmission of nerve impulse // not recorded /// 0060304 // regulation of phosphoinositide dephosphorylation // inferred from mutant phenotype 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004981 // muscarinic acetylcholine receptor activity // inferred from direct assay /// 0004981 // muscarinic acetylcholine receptor activity // inferred from electronic annotation 1369787_at NM_012688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012688.1 /DB_XREF=gi:6978614 /GEN=Cckar /FEA=FLmRNA /CNT=3 /TID=Rn.10184.1 /TIER=FL /STK=1 /UG=Rn.10184 /LL=24889 /DEF=Rattus norvegicus Cholecystokinin A receptor (Cckar), mRNA. /PROD=cholecystokinin A receptor /FL=gb:NM_012688.1 gb:M88096.1 NM_012688 cholecystokinin A receptor Cckar 24889 NM_012688 0001659 // temperature homeostasis // inferred from mutant phenotype /// 0001696 // gastric acid secretion // inferred from direct assay /// 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0002023 // reduction of food intake in response to dietary excess // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0007631 // feeding behavior // inferred from direct assay /// 0009314 // response to radiation // inferred from expression pattern /// 0009408 // response to heat // inferred from mutant phenotype /// 0030073 // insulin secretion // inferred from direct assay /// 0030157 // pancreatic juice secretion // inferred from mutant phenotype /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0031016 // pancreas development // inferred from expression pattern /// 0031100 // organ regeneration // inferred from expression pattern /// 0031532 // actin cytoskeleton reorganization // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0042594 // response to starvation // inferred from mutant phenotype /// 0042755 // eating behavior // inferred from mutant phenotype /// 0043266 // regulation of potassium ion transport // inferred from direct assay /// 0046883 // regulation of hormone secretion // inferred from direct assay /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051929 // positive regulation of calcium ion transport via voltage-gated calcium channel activity // inferred from direct assay /// 0090274 // positive regulation of somatostatin secretion // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043195 // terminal button // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004951 // cholecystokinin receptor activity // inferred from direct assay /// 0004951 // cholecystokinin receptor activity // traceable author statement /// 0004951 // cholecystokinin receptor activity // inferred from electronic annotation 1369788_s_at NM_021835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021835.2 /DB_XREF=gi:19923684 /GEN=Jun /FEA=FLmRNA /CNT=3 /TID=Rn.44320.1 /TIER=FL /STK=1 /UG=Rn.44320 /LL=24516 /DEF=Rattus norvegicus Avian sarcoma virus 17 (v-jun) oncogene homolog (Jun), mRNA. /PROD=avian sarcoma virus 17 (v-jun) oncogene homolog /FL=gb:NM_021835.2 NM_021835 Jun oncogene Jun 24516 NM_021835 0001525 // angiogenesis // inferred from mutant phenotype /// 0001836 // release of cytochrome c from mitochondria // inferred from mutant phenotype /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007184 // SMAD protein nuclear translocation // inferred from electronic annotation /// 0007184 // SMAD protein nuclear translocation // not recorded /// 0007568 // aging // inferred from expression pattern /// 0007612 // learning // inferred from mutant phenotype /// 0007623 // circadian rhythm // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009987 // cellular process // inferred from electronic annotation /// 0009987 // cellular process // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0031953 // negative regulation of protein autophosphorylation // inferred from electronic annotation /// 0031953 // negative regulation of protein autophosphorylation // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0035026 // leading edge cell differentiation // inferred from electronic annotation /// 0035026 // leading edge cell differentiation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043392 // negative regulation of DNA binding // inferred from electronic annotation /// 0043392 // negative regulation of DNA binding // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0043923 // positive regulation by host of viral transcription // inferred from electronic annotation /// 0043923 // positive regulation by host of viral transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045657 // positive regulation of monocyte differentiation // inferred from direct assay /// 0045740 // positive regulation of DNA replication // inferred from mutant phenotype /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from direct assay /// 0051365 // cellular response to potassium ion starvation // inferred from mutant phenotype /// 0051591 // response to cAMP // inferred from expression pattern /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded /// 0051899 // membrane depolarization // inferred from direct assay /// 0060395 // SMAD protein signal transduction // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // not recorded 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from mutant phenotype /// 0005667 // transcription factor complex // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from mutant phenotype /// 0003702 // RNA polymerase II transcription factor activity // traceable author statement /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0005100 // Rho GTPase activator activity // inferred from electronic annotation /// 0005100 // Rho GTPase activator activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // traceable author statement /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // traceable author statement /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred by curator /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046982 // protein heterodimerization activity // traceable author statement /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0070412 // R-SMAD binding // inferred from electronic annotation /// 0070412 // R-SMAD binding // not recorded 1369789_at M55250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M55250.1 /DB_XREF=gi:204882 /GEN=inhibitory glycine receptor /FEA=FLmRNA /CNT=3 /TID=Rn.10038.1 /TIER=FL /STK=1 /UG=Rn.10038 /LL=114516 /DEF=Rat inhibitory glycine receptor alpha subunit mRNA, complete cds. /PROD=inhibitory glycine receptor alpha subunit /FL=gb:M55250.1 gb:NM_053724.1 M55250 glycine receptor, alpha 3 Glra3 114516 NM_053724 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0016594 // glycine binding // inferred from electronic annotation /// 0016934 // extracellular-glycine-gated chloride channel activity // inferred from direct assay /// 0016934 // extracellular-glycine-gated chloride channel activity // inferred from electronic annotation /// 0022824 // transmitter-gated ion channel activity // inferred from electronic annotation 1369790_at M18340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M18340.1 /DB_XREF=gi:207155 /FEA=FLmRNA /CNT=3 /TID=Rn.9947.1 /TIER=FL /STK=1 /UG=Rn.9947 /LL=24813 /UG_GENE=Tat /UG_TITLE=Tyrosine aminotransferase /DEF=Rat tyrosine aminotransferase mRNA, complete cds. /FL=gb:NM_012668.1 gb:M18340.1 M18340 tyrosine aminotransferase Tat 24813 NM_012668 0006094 // gluconeogenesis // traceable author statement /// 0006103 // 2-oxoglutarate metabolic process // inferred from electronic annotation /// 0006103 // 2-oxoglutarate metabolic process // not recorded /// 0006519 // cellular amino acid and derivative metabolic process // inferred from electronic annotation /// 0006520 // cellular amino acid metabolic process // inferred from direct assay /// 0006536 // glutamate metabolic process // not recorded /// 0006536 // glutamate metabolic process // inferred from sequence or structural similarity /// 0006536 // glutamate metabolic process // inferred from electronic annotation /// 0006559 // L-phenylalanine catabolic process // inferred from electronic annotation /// 0006572 // tyrosine catabolic process // not recorded /// 0006572 // tyrosine catabolic process // inferred from sequence or structural similarity /// 0006572 // tyrosine catabolic process // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from direct assay /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009072 // aromatic amino acid family metabolic process // inferred from electronic annotation /// 0009074 // aromatic amino acid family catabolic process // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0046689 // response to mercury ion // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004838 // L-tyrosine:2-oxoglutarate aminotransferase activity // inferred from direct assay /// 0004838 // L-tyrosine:2-oxoglutarate aminotransferase activity // not recorded /// 0004838 // L-tyrosine:2-oxoglutarate aminotransferase activity // inferred from sequence or structural similarity /// 0004838 // L-tyrosine:2-oxoglutarate aminotransferase activity // traceable author statement /// 0004838 // L-tyrosine:2-oxoglutarate aminotransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016847 // 1-aminocyclopropane-1-carboxylate synthase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1369791_at NM_022198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022198.1 /DB_XREF=gi:11559969 /GEN=LOC60586 /FEA=FLmRNA /CNT=3 /TID=Rn.44406.1 /TIER=FL /STK=1 /UG=Rn.44406 /LL=60586 /DEF=Rattus norvegicus putative chloride channel (similar to Mm Clcn4-2) (LOC60586), mRNA. /PROD=putative chloride channel (similar to MmClcn4-2) /FL=gb:NM_022198.1 NM_022198 chloride channel 4-2 Clcn4-2 60586 NM_022198 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // not recorded /// 0006821 // chloride transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005247 // voltage-gated chloride channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // not recorded /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation 1369792_at U12006 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U12006.1 /DB_XREF=gi:551333 /FEA=FLmRNA /CNT=3 /TID=Rn.32092.1 /TIER=FL /STK=1 /UG=Rn.32092 /LL=83683 /UG_GENE=Gpr6 /UG_TITLE=putative G protein-coupled receptor (CNL3) /DEF=Rattus norvegicus putative G protein-coupled receptor mRNA, complete cds. /FL=gb:NM_031806.1 gb:AF064706.1 gb:U12006.1 U12006 G protein-coupled receptor 6 Gpr6 83683 NM_031806 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // traceable author statement /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001619 // lysosphingolipid and lysophosphatidic acid receptor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1369793_a_at AB035507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB035507.1 /DB_XREF=gi:10566950 /GEN=s-gicerinMUC18 /FEA=FLmRNA /CNT=1 /TID=Rn.64570.2 /TIER=FL /STK=1 /UG=Rn.64570 /LL=78967 /DEF=Rattus norvegicus mRNA for s-gicerinMUC18, complete cds. /PROD=s-gicerinMUC18 /FL=gb:AB035507.1 AB035507 melanoma cell adhesion molecule Mcam 78967 NM_001034009 /// NM_023983 0007155 // cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043204 // perikaryon // inferred from electronic annotation 1369794_a_at D87247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D87247.1 /DB_XREF=gi:2317665 /GEN=RB2K8 /FEA=FLmRNA /CNT=3 /TID=Rn.10791.2 /TIER=FL /STK=2 /UG=Rn.10791 /LL=117276 /DEF=Rattus norvegicus RB2K8 mRNA for fructose-6-phosphate 2-kinasefructose-2,6-bisphosphatase, complete cds. /PROD=fructose-6-phosphate2-kinasefructose-2,6-bisphosphatase /FL=gb:D87244.1 gb:D87243.1 gb:D87247.1 D87247 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 Pfkfb3 117276 NM_057135 0006000 // fructose metabolic process // inferred from electronic annotation /// 0006003 // fructose 2,6-bisphosphate metabolic process // inferred from direct assay /// 0006003 // fructose 2,6-bisphosphate metabolic process // inferred from electronic annotation /// 0006110 // regulation of glycolysis // traceable author statement /// 0007420 // brain development // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003873 // 6-phosphofructo-2-kinase activity // inferred from electronic annotation /// 0004331 // fructose-2,6-bisphosphate 2-phosphatase activity // traceable author statement /// 0004331 // fructose-2,6-bisphosphate 2-phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1369795_at NM_053981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053981.1 /DB_XREF=gi:16758879 /GEN=Kcnj12 /FEA=FLmRNA /CNT=3 /TID=Rn.10406.1 /TIER=FL /STK=1 /UG=Rn.10406 /LL=117052 /DEF=Rattus norvegicus potassium inwardly-rectifying channel, subfamily J, member 12 (Kcnj12), mRNA. /PROD=potassium inwardly-rectifying channel, subfamilyJ, member 12 /FL=gb:NM_053981.1 NM_053981 potassium inwardly-rectifying channel, subfamily J, member 12 Kcnj12 117052 NM_053981 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030315 // T-tubule // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0030165 // PDZ domain binding // inferred from physical interaction 1369796_at NM_019281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019281.1 /DB_XREF=gi:9506728 /GEN=Gja9 /FEA=FLmRNA /CNT=3 /TID=Rn.9904.1 /TIER=FL /STK=1 /UG=Rn.9904 /LL=50564 /DEF=Rattus norvegicus gap junction membrane channel protein alpha 9 (Gja9), mRNA. /PROD=gap junction membrane channel protein alpha 9 /FL=gb:NM_019281.1 NM_019281 gap junction protein, delta 2 Gjd2 50564 NM_019281 0001508 // regulation of action potential // inferred from electronic annotation /// 0001508 // regulation of action potential // not recorded /// 0007154 // cell communication // inferred from electronic annotation /// 0007267 // cell-cell signaling // inferred from expression pattern /// 0007267 // cell-cell signaling // not recorded /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007601 // visual perception // inferred from electronic annotation /// 0007601 // visual perception // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005921 // gap junction // inferred from direct assay /// 0005921 // gap junction // traceable author statement /// 0005921 // gap junction // inferred from electronic annotation /// 0005922 // connexon complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005243 // gap junction channel activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369797_at U07126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U07126.1 /DB_XREF=gi:595275 /FEA=FLmRNA /CNT=3 /TID=Rn.9991.1 /TIER=FL /STK=1 /UG=Rn.9991 /LL=29412 /UG_GENE=Adra1c /DEF=Rattus norvegicus alpha1c adrenergic receptor mRNA, complete cds. /PROD=alpha1c adrenergic receptor /FL=gb:U07126.1 gb:NM_017191.1 gb:U13368.1 U07126 adrenergic, alpha-1A-, receptor Adra1a 29412 NM_017191 0001985 // negative regulation of heart rate involved in baroreceptor response to increased systemic arterial blood pressure // inferred from electronic annotation /// 0001985 // negative regulation of heart rate involved in baroreceptor response to increased systemic arterial blood pressure // not recorded /// 0001994 // norepinephrine-epinephrine vasoconstriction involved in regulation of systemic arterial blood pressure // inferred from electronic annotation /// 0001994 // norepinephrine-epinephrine vasoconstriction involved in regulation of systemic arterial blood pressure // not recorded /// 0001996 // positive regulation of heart rate by epinephrine-norepinephrine // inferred from electronic annotation /// 0001996 // positive regulation of heart rate by epinephrine-norepinephrine // not recorded /// 0001997 // positive regulation of the force of heart contraction by epinephrine-norepinephrine // inferred from electronic annotation /// 0001997 // positive regulation of the force of heart contraction by epinephrine-norepinephrine // not recorded /// 0006950 // response to stress // inferred from direct assay /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // not recorded /// 0007202 // activation of phospholipase C activity // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0007512 // adult heart development // inferred from electronic annotation /// 0007512 // adult heart development // not recorded /// 0007568 // aging // inferred from direct assay /// 0009725 // response to hormone stimulus // inferred from mutant phenotype /// 0016049 // cell growth // inferred from electronic annotation /// 0016049 // cell growth // not recorded /// 0032229 // negative regulation of synaptic transmission, GABAergic // inferred from direct assay /// 0035024 // negative regulation of Rho protein signal transduction // inferred from mutant phenotype /// 0035265 // organ growth // inferred from electronic annotation /// 0035265 // organ growth // not recorded /// 0042493 // response to drug // inferred from mutant phenotype /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0045760 // positive regulation of action potential // inferred from mutant phenotype /// 0045907 // positive regulation of vasoconstriction // inferred from direct assay /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype /// 0060402 // calcium ion transport into cytosol // inferred from mutant phenotype /// 0060452 // positive regulation of cardiac muscle contraction // inferred from mutant phenotype /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from mutant phenotype /// 0090037 // positive regulation of protein kinase C signaling cascade // inferred from mutant phenotype 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004935 // adrenergic receptor activity // inferred from electronic annotation /// 0004937 // alpha1-adrenergic receptor activity // inferred from direct assay /// 0004937 // alpha1-adrenergic receptor activity // not recorded /// 0004937 // alpha1-adrenergic receptor activity // inferred from electronic annotation 1369798_at U45946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U45946.1 /DB_XREF=gi:1314364 /GEN=ATP1B2 /FEA=FLmRNA /CNT=3 /TID=Rn.10624.1 /TIER=FL /STK=1 /UG=Rn.10624 /LL=24214 /DEF=Rattus norvegicus Na,K-ATPase beta 2 subunit (ATP1B2) mRNA, complete cds. /PROD=Na,K-ATPase beta 2 subunit /FL=gb:U45946.1 gb:NM_012507.1 gb:J04629.1 U45946 ATPase, Na+/K+ transporting, beta 2 polypeptide Atp1b2 24214 NM_012507 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay 0005391 // sodium:potassium-exchanging ATPase activity // inferred from direct assay /// 0005391 // sodium:potassium-exchanging ATPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369799_at U29701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U29701.1 /DB_XREF=gi:905378 /GEN=GABA-T /FEA=FLmRNA /CNT=3 /TID=Rn.10090.1 /TIER=FL /STK=1 /UG=Rn.10090 /LL=81632 /DEF=Rattus norvegicus GABA transaminase (GABA-T) mRNA, complete cds. /PROD=GABA transaminase /FL=gb:NM_031003.1 gb:D87839.1 gb:U29701.1 U29701 4-aminobutyrate aminotransferase Abat 81632 NM_031003 0001666 // response to hypoxia // inferred from mutant phenotype /// 0007620 // copulation // inferred from mutant phenotype /// 0007626 // locomotory behavior // inferred from mutant phenotype /// 0009448 // gamma-aminobutyric acid metabolic process // inferred from electronic annotation /// 0009450 // gamma-aminobutyric acid catabolic process // inferred by curator /// 0010039 // response to iron ion // inferred from direct assay /// 0035094 // response to nicotine // inferred from mutant phenotype /// 0042135 // neurotransmitter catabolic process // inferred by curator /// 0042135 // neurotransmitter catabolic process // inferred from electronic annotation /// 0042220 // response to cocaine // inferred from mutant phenotype /// 0042493 // response to drug // inferred from direct assay /// 0045471 // response to ethanol // inferred from direct assay /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0048148 // behavioral response to cocaine // not recorded /// 0048148 // behavioral response to cocaine // inferred from sequence or structural similarity /// 0048148 // behavioral response to cocaine // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0032144 // 4-aminobutyrate transaminase complex // not recorded /// 0032144 // 4-aminobutyrate transaminase complex // inferred from sequence or structural similarity /// 0032144 // 4-aminobutyrate transaminase complex // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003867 // 4-aminobutyrate transaminase activity // inferred from direct assay /// 0003867 // 4-aminobutyrate transaminase activity // inferred from electronic annotation /// 0003867 // 4-aminobutyrate transaminase activity // not recorded /// 0003867 // 4-aminobutyrate transaminase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // not recorded /// 0030170 // pyridoxal phosphate binding // inferred from sequence or structural similarity /// 0032145 // succinate-semialdehyde dehydrogenase binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0047298 // (S)-3-amino-2-methylpropionate transaminase activity // inferred from electronic annotation 1369800_at AF310216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF310216.1 /DB_XREF=gi:16588401 /FEA=FLmRNA /CNT=3 /TID=Rn.81079.1 /TIER=FL /STK=1 /UG=Rn.81079 /LL=116498 /UG_GENE=F2rl3 /DEF=Rattus norvegicus proteinase activated receptor 4 mRNA, complete cds. /PROD=proteinase activated receptor 4 /FL=gb:AF310216.1 gb:AF269246.2 gb:NM_053808.1 AF310216 coagulation factor II (thrombin) receptor-like 3 F2rl3 116498 NM_053808 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0015057 // thrombin receptor activity // inferred from electronic annotation 1369801_at D10831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D10831.1 /DB_XREF=gi:220801 /FEA=FLmRNA /CNT=3 /TID=Rn.10461.1 /TIER=FL /STK=1 /UG=Rn.10461 /LL=29259 /UG_GENE=Sell /DEF=Rat mRNA for LECAM-1, complete cds. /PROD=LECAM-1 /FL=gb:D10831.1 gb:NM_019177.1 D10831 selectin L Sell 29259 NM_019177 0007155 // cell adhesion // inferred from electronic annotation /// 0033198 // response to ATP // inferred from electronic annotation /// 0033198 // response to ATP // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from electronic annotation /// 0050839 // cell adhesion molecule binding // not recorded 1369802_at NM_019270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019270.1 /DB_XREF=gi:9506826 /GEN=Kcna3 /FEA=FLmRNA /CNT=3 /TID=Rn.44292.1 /TIER=FL /STK=1 /UG=Rn.44292 /LL=29731 /DEF=Rattus norvegicus potassium voltage gated channel, shaker related subfamily, member 3 (Kcna3), mRNA. /PROD=potassium voltage gated channel, shaker relatedsubfamily, member 3 /FL=gb:NM_019270.1 NM_019270 potassium voltage-gated channel, shaker-related subfamily, member 3 Kcna3 29731 NM_019270 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // traceable author statement /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // traceable author statement /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005251 // delayed rectifier potassium channel activity // inferred from mutant phenotype /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0015271 // outward rectifier potassium channel activity // inferred from mutant phenotype 1369803_at NM_053964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053964.1 /DB_XREF=gi:16758981 /GEN=Ptf1a /FEA=FLmRNA /CNT=3 /TID=Rn.10536.1 /TIER=FL /STK=1 /UG=Rn.10536 /LL=117034 /DEF=Rattus norvegicus pancreas specific transcription factor, 1a (Ptf1a), mRNA. /PROD=pancreas specific transcription factor, 1a /FL=gb:NM_053964.1 NM_053964 pancreas specific transcription factor, 1a Ptf1a 117034 NM_053964 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0009790 // embryo development // inferred from sequence or structural similarity /// 0009790 // embryo development // inferred from electronic annotation /// 0009888 // tissue development // not recorded /// 0009888 // tissue development // inferred from sequence or structural similarity /// 0009888 // tissue development // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030902 // hindbrain development // not recorded /// 0030902 // hindbrain development // inferred from sequence or structural similarity /// 0030902 // hindbrain development // inferred from electronic annotation /// 0031016 // pancreas development // not recorded /// 0031016 // pancreas development // inferred from electronic annotation /// 0031017 // exocrine pancreas development // inferred from direct assay /// 0045165 // cell fate commitment // not recorded /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0048384 // retinoic acid receptor signaling pathway // not recorded /// 0048384 // retinoic acid receptor signaling pathway // inferred from sequence or structural similarity /// 0048384 // retinoic acid receptor signaling pathway // inferred from electronic annotation /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0048699 // generation of neurons // not recorded /// 0048699 // generation of neurons // inferred from sequence or structural similarity /// 0048699 // generation of neurons // inferred from electronic annotation /// 0060042 // retina morphogenesis in camera-type eye // inferred from electronic annotation /// 0060042 // retina morphogenesis in camera-type eye // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from direct assay /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1369804_a_at AB042192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB042192.1 /DB_XREF=gi:9650967 /GEN=rCK1e-3 /FEA=FLmRNA /CNT=4 /TID=Rn.12365.2 /TIER=FL /STK=1 /UG=Rn.12365 /LL=58822 /DEF=Rattus norvegicus rCK1e-3 mRNA for casein kinase 1 epsilon-3, complete cds. /PROD=casein kinase 1 epsilon-3 /FL=gb:AB042192.1 AB042192 casein kinase 1, epsilon Csnk1e 58822 NM_031617 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0042752 // regulation of circadian rhythm // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1369805_at NM_021581 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021581.1 /DB_XREF=gi:11024655 /GEN=Sc65 /FEA=FLmRNA /CNT=3 /TID=Rn.40377.1 /TIER=FL /STK=1 /UG=Rn.40377 /LL=59101 /DEF=Rattus norvegicus SC65 synaptonemal complex protein (Sc65), mRNA. /PROD=SC65 synaptonemal complex protein /FL=gb:NM_021581.1 NM_021581 synaptonemal complex protein SC65 Sc65 59101 NM_021581 0000795 // synaptonemal complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1369806_at NM_012701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012701.1 /DB_XREF=gi:6978458 /GEN=Adrb1 /FEA=FLmRNA /CNT=3 /TID=Rn.44321.1 /TIER=FL /STK=1 /UG=Rn.44321 /LL=24925 /DEF=Rattus norvegicus Adrenergic receptor beta 1 (Adrb1), mRNA. /PROD=adrenergic receptor beta 1 /FL=gb:NM_012701.1 NM_012701 adrenergic, beta-1-, receptor Adrb1 24925 NM_012701 0001996 // positive regulation of heart rate by epinephrine-norepinephrine // inferred from electronic annotation /// 0001996 // positive regulation of heart rate by epinephrine-norepinephrine // not recorded /// 0001997 // positive regulation of the force of heart contraction by epinephrine-norepinephrine // inferred from electronic annotation /// 0001997 // positive regulation of the force of heart contraction by epinephrine-norepinephrine // not recorded /// 0002024 // diet induced thermogenesis // inferred from electronic annotation /// 0002024 // diet induced thermogenesis // not recorded /// 0002025 // vasodilation by norepinephrine-epinephrine involved in regulation of systemic arterial blood pressure // inferred from electronic annotation /// 0002025 // vasodilation by norepinephrine-epinephrine involved in regulation of systemic arterial blood pressure // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // traceable author statement /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0009409 // response to cold // inferred from electronic annotation /// 0009409 // response to cold // not recorded /// 0030819 // positive regulation of cAMP biosynthetic process // not recorded /// 0031649 // heat generation // inferred from electronic annotation /// 0031649 // heat generation // not recorded /// 0040015 // negative regulation of multicellular organism growth // inferred from electronic annotation /// 0040015 // negative regulation of multicellular organism growth // not recorded /// 0042596 // fear response // inferred from electronic annotation /// 0042596 // fear response // not recorded /// 0048167 // regulation of synaptic plasticity // traceable author statement /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004935 // adrenergic receptor activity // inferred from electronic annotation /// 0004940 // beta1-adrenergic receptor activity // inferred from direct assay /// 0004940 // beta1-adrenergic receptor activity // not recorded /// 0004940 // beta1-adrenergic receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0031694 // alpha-2A adrenergic receptor binding // not recorded /// 0035240 // dopamine binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // not recorded /// 0051379 // epinephrine binding // inferred from direct assay /// 0051379 // epinephrine binding // traceable author statement /// 0051380 // norepinephrine binding // inferred from direct assay /// 0051380 // norepinephrine binding // traceable author statement 1369807_at NM_030851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030851.1 /DB_XREF=gi:13540664 /GEN=Bdkrb1 /FEA=FLmRNA /CNT=3 /TID=Rn.10762.1 /TIER=FL /STK=1 /UG=Rn.10762 /LL=81509 /DEF=Rattus norvegicus Bradykinin receptor B1 (Bdkrb1), mRNA. /PROD=B1 bradykinin receptor /FL=gb:NM_030851.1 gb:U66107.2 NM_030851 bradykinin receptor B1 Bdkrb1 81509 NM_030851 0001933 // negative regulation of protein phosphorylation // inferred from mutant phenotype /// 0002687 // positive regulation of leukocyte migration // inferred from mutant phenotype /// 0006954 // inflammatory response // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // traceable author statement /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0019233 // sensory perception of pain // inferred from mutant phenotype /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from direct assay 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004947 // bradykinin receptor activity // inferred from direct assay /// 0004947 // bradykinin receptor activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from physical interaction /// 0042277 // peptide binding // not recorded /// 0042277 // peptide binding // inferred from electronic annotation 1369808_at NM_053958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053958.1 /DB_XREF=gi:16758843 /GEN=Cmkbr3 /FEA=FLmRNA /CNT=3 /TID=Rn.9890.1 /TIER=FL /STK=1 /UG=Rn.9890 /LL=117027 /DEF=Rattus norvegicus chemokine (C-C) receptor 3 (Cmkbr3), mRNA. /PROD=chemokine (C-C) receptor 3 /FL=gb:NM_053958.1 NM_053958 chemokine (C-C motif) receptor 3 Ccr3 117027 NM_053958 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006935 // chemotaxis // not recorded /// 0006954 // inflammatory response // non-traceable author statement /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004950 // chemokine receptor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016493 // C-C chemokine receptor activity // inferred from electronic annotation /// 0016493 // C-C chemokine receptor activity // not recorded 1369809_at NM_012585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012585.1 /DB_XREF=gi:6981053 /GEN=Htr1a /FEA=FLmRNA /CNT=3 /TID=Rn.44486.1 /TIER=FL /STK=1 /UG=Rn.44486 /LL=24473 /DEF=Rattus norvegicus 5-Hydroxytryptamine (serotonin) receptor 1A (Htr1a), mRNA. /PROD=5-Hydroxytryptamine (serotonin) receptor 1A /FL=gb:NM_012585.1 NM_012585 5-hydroxytryptamine (serotonin) receptor 1A Htr1a 24473 NM_012585 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007198 // inhibition of adenylate cyclase activity by serotonin receptor signaling pathway // inferred from mutant phenotype /// 0007210 // serotonin receptor signaling pathway // inferred from mutant phenotype /// 0060259 // regulation of feeding behavior // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043203 // axon hillock // inferred from direct assay 0001965 // G-protein alpha-subunit binding // inferred from physical interaction /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // inferred from direct assay /// 0004993 // serotonin receptor activity // inferred from mutant phenotype /// 0004993 // serotonin receptor activity // not recorded /// 0004993 // serotonin receptor activity // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0051378 // serotonin binding // inferred from direct assay 1369810_at NM_012698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012698.1 /DB_XREF=gi:6978766 /GEN=Dmd /FEA=FLmRNA /CNT=3 /TID=Rn.10307.1 /TIER=FL /STK=1 /UG=Rn.10307 /LL=24907 /DEF=Rattus norvegicus Dystrophin (Dmd), mRNA. /PROD=dystrophin /FL=gb:NM_012698.1 NM_012698 dystrophin Dmd 24907 NM_001005244 /// NM_001005246 /// NM_012698 0007517 // muscle organ development // inferred from electronic annotation /// 0007517 // muscle organ development // not recorded /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0021629 // olfactory nerve structural organization // inferred from electronic annotation /// 0021629 // olfactory nerve structural organization // not recorded /// 0043043 // peptide biosynthetic process // inferred from electronic annotation /// 0043043 // peptide biosynthetic process // not recorded /// 0045213 // neurotransmitter receptor metabolic process // inferred from electronic annotation /// 0045213 // neurotransmitter receptor metabolic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0046716 // muscle cell homeostasis // inferred from electronic annotation /// 0046716 // muscle cell homeostasis // not recorded /// 0048812 // neuron projection morphogenesis // inferred from mutant phenotype 0005626 // insoluble fraction // inferred from electronic annotation /// 0005626 // insoluble fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016010 // dystrophin-associated glycoprotein complex // inferred from electronic annotation /// 0016010 // dystrophin-associated glycoprotein complex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030016 // myofibril // inferred from direct assay /// 0030018 // Z disc // inferred from electronic annotation /// 0030018 // Z disc // not recorded /// 0030055 // cell-substrate junction // inferred from electronic annotation /// 0030055 // cell-substrate junction // not recorded /// 0042383 // sarcolemma // inferred from direct assay /// 0042383 // sarcolemma // not recorded /// 0042383 // sarcolemma // inferred from electronic annotation /// 0043034 // costamere // inferred from electronic annotation /// 0043034 // costamere // not recorded /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0002162 // dystroglycan binding // inferred from electronic annotation /// 0002162 // dystroglycan binding // not recorded /// 0003779 // actin binding // inferred from electronic annotation /// 0005178 // integrin binding // inferred from physical interaction /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008307 // structural constituent of muscle // not recorded /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0050998 // nitric-oxide synthase binding // inferred from electronic annotation /// 0050998 // nitric-oxide synthase binding // not recorded 1369811_at U35098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U35098.1 /DB_XREF=gi:1040916 /FEA=FLmRNA /CNT=3 /TID=Rn.10133.1 /TIER=FL /STK=1 /UG=Rn.10133 /LL=64832 /UG_GENE=Cplx1 /DEF=Rattus norvegicus complexin I mRNA, complete cds. /PROD=complexin I /FL=gb:D70817.1 gb:U35098.1 gb:NM_022864.1 U35098 complexin 1 Cplx1 64832 NM_022864 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0016079 // synaptic vesicle exocytosis // inferred from direct assay /// 0016079 // synaptic vesicle exocytosis // not recorded /// 0016079 // synaptic vesicle exocytosis // inferred from electronic annotation /// 0030073 // insulin secretion // inferred from electronic annotation /// 0030073 // insulin secretion // not recorded /// 0055085 // transmembrane transport // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0031201 // SNARE complex // not recorded /// 0031201 // SNARE complex // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0045202 // synapse // inferred from direct assay /// 0070032 // synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex // inferred from direct assay 0000149 // SNARE binding // inferred from direct assay /// 0005326 // neurotransmitter transporter activity // inferred from electronic annotation /// 0005326 // neurotransmitter transporter activity // not recorded /// 0017075 // syntaxin-1 binding // inferred from direct assay /// 0019905 // syntaxin binding // inferred from electronic annotation 1369812_at NM_031680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031680.1 /DB_XREF=gi:13928943 /GEN=P2ry4 /FEA=FLmRNA /CNT=3 /TID=Rn.30068.1 /TIER=FL /STK=1 /UG=Rn.30068 /LL=63843 /DEF=Rattus norvegicus pyrimidinergic receptor P2Y, G-protein coupled, 4 (P2ry4), mRNA. /PROD=purinergic receptor P2Y, G-protein coupled, 4 /FL=gb:NM_031680.1 NM_031680 pyrimidinergic receptor P2Y, G-protein coupled, 4 P2ry4 63843 NM_031680 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0030321 // transepithelial chloride transport // inferred from electronic annotation /// 0030321 // transepithelial chloride transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0045028 // purinergic nucleotide receptor activity, G-protein coupled // inferred from electronic annotation /// 0045030 // UTP-activated nucleotide receptor activity // inferred from electronic annotation /// 0045030 // UTP-activated nucleotide receptor activity // not recorded 1369813_at U39320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U39320.1 /DB_XREF=gi:1063690 /FEA=FLmRNA /CNT=3 /TID=Rn.10147.1 /TIER=FL /STK=1 /UG=Rn.10147 /LL=79130 /UG_GENE=Csp /DEF=Rattus norvegicus cysteine string protein mRNA, complete cds. /PROD=cysteine string protein /FL=gb:NM_024161.2 gb:AF323955.1 gb:U39320.1 U39320 DnaJ (Hsp40) homolog, subfamily C, member 5 Dnajc5 79130 NM_024161 0006457 // protein folding // inferred from electronic annotation /// 0007268 // synaptic transmission // traceable author statement /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded 0016020 // membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1369814_at AF053312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF053312.1 /DB_XREF=gi:3551816 /FEA=FLmRNA /CNT=3 /TID=Rn.10722.1 /TIER=FL /STK=1 /UG=Rn.10722 /LL=29538 /UG_GENE=Scya20 /DEF=Rattus norvegicus CC chemokine ST38 precursor, mRNA, complete cds. /PROD=CC chemokine ST38 precursor /FL=gb:NM_019233.1 gb:U90447.1 gb:AF053312.1 AF053312 chemokine (C-C motif) ligand 20 Ccl20 29538 NM_019233 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0042466 // chemokinesis // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // not recorded /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008009 // chemokine activity // inferred from direct assay /// 0008009 // chemokine activity // inferred from electronic annotation 1369815_at U22414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U22414.1 /DB_XREF=gi:790632 /FEA=FLmRNA /CNT=3 /TID=Rn.10139.1 /TIER=FL /STK=1 /UG=Rn.10139 /LL=25542 /UG_GENE=Scya3 /DEF=Rattus norvegicus macrophage inflammatory protein-1alpha mRNA, complete cds. /PROD=macrophage inflammatory protein-1alpha /FL=gb:NM_013025.1 gb:U06435.1 gb:U22414.1 U22414 chemokine (C-C motif) ligand 3 Ccl3 25542 NM_013025 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from expression pattern /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0030593 // neutrophil chemotaxis // inferred from direct assay /// 0030595 // leukocyte chemotaxis // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0045672 // positive regulation of osteoclast differentiation // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005625 // soluble fraction // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008009 // chemokine activity // inferred from direct assay /// 0008009 // chemokine activity // not recorded /// 0008009 // chemokine activity // traceable author statement /// 0008009 // chemokine activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0042056 // chemoattractant activity // not recorded 1369816_at NM_013018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013018.1 /DB_XREF=gi:6981451 /GEN=Rab3a /FEA=FLmRNA /CNT=3 /TID=Rn.44409.1 /TIER=FL /STK=1 /UG=Rn.44409 /LL=25531 /DEF=Rattus norvegicus Ras-related small GTP binding protein 3A (Rab3a), mRNA. /PROD=ras-related small GTP binding protein 3A /FL=gb:NM_013018.1 NM_013018 RAB3A, member RAS oncogene family Rab3a 25531 NM_013018 0003016 // respiratory system process // inferred from electronic annotation /// 0003016 // respiratory system process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016079 // synaptic vesicle exocytosis // inferred from electronic annotation /// 0016079 // synaptic vesicle exocytosis // not recorded /// 0016188 // synaptic vesicle maturation // inferred from electronic annotation /// 0016188 // synaptic vesicle maturation // not recorded /// 0017157 // regulation of exocytosis // not recorded /// 0017157 // regulation of exocytosis // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0031630 // regulation of synaptic vesicle fusion to presynaptic membrane // inferred from electronic annotation /// 0031630 // regulation of synaptic vesicle fusion to presynaptic membrane // not recorded /// 0032482 // Rab protein signal transduction // inferred by curator /// 0048790 // maintenance of presynaptic active zone structure // inferred from electronic annotation /// 0048790 // maintenance of presynaptic active zone structure // not recorded /// 0050975 // sensory perception of touch // inferred from electronic annotation /// 0050975 // sensory perception of touch // not recorded /// 0051602 // response to electrical stimulus // inferred from electronic annotation /// 0051602 // response to electrical stimulus // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0008021 // synaptic vesicle // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0060201 // clathrin sculpted acetylcholine transport vesicle membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0001671 // ATPase activator activity // inferred from direct assay /// 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0051020 // GTPase binding // inferred from physical interaction /// 0051117 // ATPase binding // inferred from direct assay 1369817_at NM_022696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022696.1 /DB_XREF=gi:12083652 /GEN=Hand2 /FEA=FLmRNA /CNT=3 /TID=Rn.36496.1 /TIER=FL /STK=1 /UG=Rn.36496 /LL=64637 /DEF=Rattus norvegicus dHand protein (Hand2), mRNA. /PROD=dHand protein /FL=gb:NM_022696.1 NM_022696 heart and neural crest derivatives expressed 2 Hand2 64637 NM_022696 0001525 // angiogenesis // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001947 // heart looping // inferred from electronic annotation /// 0001947 // heart looping // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007512 // adult heart development // inferred from electronic annotation /// 0007512 // adult heart development // not recorded /// 0014032 // neural crest cell development // inferred from electronic annotation /// 0014032 // neural crest cell development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003713 // transcription coactivator activity // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0033613 // transcription activator binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // traceable author statement /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // traceable author statement /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0070888 // E-box binding // inferred from electronic annotation 1369818_at NM_012957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012957.1 /DB_XREF=gi:6978868 /GEN=Gabrb2 /FEA=FLmRNA /CNT=3 /TID=Rn.48880.1 /TIER=FL /STK=1 /UG=Rn.48880 /LL=25451 /DEF=Rattus norvegicus Gamma-aminobutyric acid receptor beta 2 (Gabrb2), mRNA. /PROD=gamma-aminobutyric acid receptor beta 2 /FL=gb:NM_012957.1 NM_012957 gamma-aminobutyric acid (GABA) A receptor, beta 2 Gabrb2 25451 NM_012957 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // traceable author statement 0005624 // membrane fraction // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004890 // GABA-A receptor activity // inferred from mutant phenotype /// 0004890 // GABA-A receptor activity // traceable author statement /// 0004890 // GABA-A receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005237 // inhibitory extracellular ligand-gated ion channel activity // inferred from mutant phenotype /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1369819_at NM_019146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019146.1 /DB_XREF=gi:9506426 /GEN=Bsn /FEA=FLmRNA /CNT=2 /TID=Rn.29999.1 /TIER=FL /STK=1 /UG=Rn.29999 /LL=29138 /DEF=Rattus norvegicus bassoon (Bsn), mRNA. /PROD=bassoon /FL=gb:NM_019146.1 NM_019146 bassoon Bsn 29138 NM_019146 0007010 // cytoskeleton organization // non-traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0048786 // presynaptic active zone // inferred from electronic annotation /// 0048786 // presynaptic active zone // not recorded 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369820_at NM_053951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053951.1 /DB_XREF=gi:16758831 /GEN=Mcf2l /FEA=FLmRNA /CNT=2 /TID=Rn.81062.1 /TIER=FL /STK=1 /UG=Rn.81062 /LL=117020 /DEF=Rattus norvegicus MCF.2 cell line derived transforming sequence-like (Mcf2l), mRNA. /PROD=MCF.2 cell line derived transformingsequence-like /FL=gb:NM_053951.1 NM_053951 MCF.2 cell line derived transforming sequence-like Mcf2l 117020 NM_053951 0006915 // apoptosis // not recorded /// 0007266 // Rho protein signal transduction // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005545 // phosphatidylinositol binding // not recorded 1369821_a_at AF068572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF068572.1 /DB_XREF=gi:3192882 /FEA=FLmRNA /CNT=1 /TID=Rn.10733.2 /TIER=FL /STK=1 /UG=Rn.10733 /LL=83686 /UG_GENE=Cngb1 /DEF=Rattus norvegicus cyclic nucleotide-gated channel beta subunit 1b mRNA, complete cds. /PROD=cyclic nucleotide-gated channel beta subunit 1b /FL=gb:AF068572.1 AF068572 cyclic nucleotide gated channel beta 1 Cngb1 83686 NM_031809 0007601 // visual perception // traceable author statement /// 0007602 // phototransduction // not recorded /// 0007602 // phototransduction // inferred from electronic annotation /// 0007608 // sensory perception of smell // traceable author statement /// 0045494 // photoreceptor cell maintenance // not recorded /// 0045494 // photoreceptor cell maintenance // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation 0005221 // intracellular cyclic nucleotide activated cation channel activity // traceable author statement 1369822_at NM_022264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022264.1 /DB_XREF=gi:11560078 /GEN=Kit /FEA=FLmRNA /CNT=2 /TID=Rn.54004.1 /TIER=FL /STK=1 /UG=Rn.54004 /LL=64030 /DEF=Rattus norvegicus c-kit receptor tyrosine kinase (Kit), mRNA. /PROD=c-kit receptor tyrosine kinase /FL=gb:NM_022264.1 NM_022264 v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog Kit 64030 NM_022264 0002318 // myeloid progenitor cell differentiation // not recorded /// 0002318 // myeloid progenitor cell differentiation // inferred from electronic annotation /// 0002320 // lymphoid progenitor cell differentiation // not recorded /// 0002320 // lymphoid progenitor cell differentiation // inferred from electronic annotation /// 0002573 // myeloid leukocyte differentiation // not recorded /// 0002573 // myeloid leukocyte differentiation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006687 // glycosphingolipid metabolic process // not recorded /// 0006687 // glycosphingolipid metabolic process // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from mutant phenotype /// 0007286 // spermatid development // not recorded /// 0007286 // spermatid development // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008354 // germ cell migration // inferred from mutant phenotype /// 0008542 // visual learning // inferred from mutant phenotype /// 0008584 // male gonad development // not recorded /// 0009314 // response to radiation // not recorded /// 0009314 // response to radiation // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0031274 // positive regulation of pseudopodium assembly // inferred from mutant phenotype /// 0035019 // somatic stem cell maintenance // inferred from mutant phenotype /// 0035234 // germ cell programmed cell death // not recorded /// 0035234 // germ cell programmed cell death // inferred from electronic annotation /// 0043069 // negative regulation of programmed cell death // not recorded /// 0043069 // negative regulation of programmed cell death // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // not recorded /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0043473 // pigmentation // not recorded /// 0043473 // pigmentation // inferred from electronic annotation /// 0045747 // positive regulation of Notch signaling pathway // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0048066 // developmental pigmentation // not recorded /// 0048066 // developmental pigmentation // inferred from electronic annotation /// 0048070 // regulation of developmental pigmentation // not recorded /// 0048070 // regulation of developmental pigmentation // inferred from electronic annotation /// 0048103 // somatic stem cell division // inferred from mutant phenotype /// 0048170 // positive regulation of long-term neuronal synaptic plasticity // inferred from mutant phenotype /// 0050673 // epithelial cell proliferation // inferred from mutant phenotype 0001669 // acrosomal vesicle // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009898 // internal side of plasma membrane // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from direct assay /// 0004714 // transmembrane receptor protein tyrosine kinase activity // non-traceable author statement /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005020 // stem cell factor receptor activity // not recorded /// 0005020 // stem cell factor receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1369823_at NM_020301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020301.1 /DB_XREF=gi:9945323 /GEN=Adam7 /FEA=FLmRNA /CNT=2 /TID=Rn.10357.1 /TIER=FL /STK=1 /UG=Rn.10357 /LL=29641 /DEF=Rattus norvegicus a disintegrin and metalloprotease domain (ADAM) 7 (Adam7), mRNA. /PROD=a disintegrin and metalloprotease domain 7 /FL=gb:NM_020301.1 NM_020301 ADAM metallopeptidase domain 7 Adam7 29641 NM_020301 0006508 // proteolysis // inferred from electronic annotation /// 0007283 // spermatogenesis // non-traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1369824_at AF016297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF016297.1 /DB_XREF=gi:2367640 /FEA=FLmRNA /CNT=2 /TID=Rn.10816.1 /TIER=FL /STK=1 /UG=Rn.10816 /LL=81527 /UG_GENE=Nrp2 /DEF=Rattus norvegicus neuropilin-2 mRNA, complete cds. /PROD=neuropilin-2 /FL=gb:NM_030869.1 gb:AF016297.1 AF016297 neuropilin 2 Nrp2 81527 NM_030869 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // inferred from expression pattern /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0050919 // negative chemotaxis // inferred from electronic annotation /// 0050919 // negative chemotaxis // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017154 // semaphorin receptor activity // inferred from electronic annotation /// 0017154 // semaphorin receptor activity // not recorded 1369825_at NM_031054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031054.1 /DB_XREF=gi:13591990 /GEN=Mmp2 /FEA=FLmRNA /CNT=2 /TID=Rn.10342.1 /TIER=FL /STK=1 /UG=Rn.10342 /LL=81686 /DEF=Rattus norvegicus matrix metalloproteinase 2 (72 KDa type IV collagenase) (Mmp2), mRNA. /PROD=matrix metalloproteinase 2 (72 KDa type IVcollagenase) /FL=gb:NM_031054.1 NM_031054 matrix metallopeptidase 2 Mmp2 81686 NM_031054 0001525 // angiogenesis // inferred from expression pattern /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001541 // ovarian follicle development // inferred from direct assay /// 0001542 // ovulation from ovarian follicle // inferred from expression pattern /// 0001666 // response to hypoxia // inferred from direct assay /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001955 // blood vessel maturation // not recorded /// 0001955 // blood vessel maturation // inferred from electronic annotation /// 0001957 // intramembranous ossification // not recorded /// 0001957 // intramembranous ossification // inferred from electronic annotation /// 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from direct assay /// 0007162 // negative regulation of cell adhesion // inferred from direct assay /// 0007565 // female pregnancy // inferred from expression pattern /// 0007567 // parturition // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0009314 // response to radiation // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from direct assay /// 0014012 // peripheral nervous system axon regeneration // inferred from direct assay /// 0014823 // response to activity // inferred from expression pattern /// 0016049 // cell growth // inferred from expression pattern /// 0016477 // cell migration // inferred from mutant phenotype /// 0030574 // collagen catabolic process // inferred from electronic annotation /// 0030574 // collagen catabolic process // not recorded /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0035094 // response to nicotine // inferred from expression pattern /// 0042493 // response to drug // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from direct assay /// 0043065 // positive regulation of apoptosis // inferred from direct assay /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0045906 // negative regulation of vasoconstriction // inferred from direct assay /// 0048705 // skeletal system morphogenesis // not recorded /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0048771 // tissue remodeling // inferred from direct assay /// 0051602 // response to electrical stimulus // inferred from expression pattern /// 0060033 // anatomical structure regression // inferred from expression pattern /// 0060325 // face morphogenesis // not recorded /// 0060325 // face morphogenesis // inferred from electronic annotation /// 0060346 // bone trabecula formation // not recorded /// 0060346 // bone trabecula formation // inferred from electronic annotation /// 0060740 // prostate gland epithelium morphogenesis // inferred from mutant phenotype /// 0071345 // cellular response to cytokine stimulus // inferred from expression pattern /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071392 // cellular response to estradiol stimulus // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030017 // sarcomere // not recorded /// 0030017 // sarcomere // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0001968 // fibronectin binding // inferred from physical interaction /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // traceable author statement /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369826_at NM_021702 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021702.1 /DB_XREF=gi:11067442 /GEN=Rsca3 /FEA=FLmRNA /CNT=2 /TID=Rn.42932.1 /TIER=FL /STK=1 /UG=Rn.42932 /LL=60331 /DEF=Rattus norvegicus rsca3 protein (Rsca3), mRNA. /PROD=rsca3 protein /FL=gb:NM_021702.1 NM_021702 ataxin 3 Atxn3 60331 NM_021702 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0042405 // nuclear inclusion body // inferred from electronic annotation /// 0042405 // nuclear inclusion body // not recorded 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1369827_at NM_134376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134376.1 /DB_XREF=gi:19705480 /GEN=Cstn3 /FEA=FLmRNA /CNT=2 /TID=Rn.82690.1 /TIER=FL /STK=1 /UG=Rn.82690 /DEF=Rattus norvegicus calsyntenin 3 (Cstn3), mRNA. /PROD=calsyntenin 3 /FL=gb:NM_134376.1 NM_134376 calsyntenin 3 Clstn3 171393 NM_134376 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007268 // synaptic transmission // non-traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0045211 // postsynaptic membrane // not recorded /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1369828_at NM_133555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133555.1 /DB_XREF=gi:19424231 /GEN=Csf2rb1 /FEA=FLmRNA /CNT=2 /TID=Rn.42930.1 /TIER=FL /STK=1 /UG=Rn.42930 /LL=171081 /DEF=Rattus norvegicus colony stimulating factor 2 receptor, beta 1, low-affinity (granulocyte-macrophage) (Csf2rb1), mRNA. /PROD=colony stimulating factor 2 receptor, beta 1,low-affinity (granulocyte-macrophage) /FL=gb:NM_133555.1 NM_133555 colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage) Csf2rb 171081 NM_133555 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from expression pattern 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369829_at NM_053984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053984.1 /DB_XREF=gi:16758885 /GEN=Gjb4 /FEA=FLmRNA /CNT=2 /TID=Rn.10344.1 /TIER=FL /STK=1 /UG=Rn.10344 /LL=117055 /DEF=Rattus norvegicus gap junction membrane channel protein beta 4 (Gjb4), mRNA. /PROD=gap junction membrane channel protein beta 4 /FL=gb:NM_053984.1 NM_053984 gap junction protein, beta 4 Gjb4 117055 NM_053984 0007154 // cell communication // inferred from electronic annotation /// 0007608 // sensory perception of smell // not recorded /// 0042048 // olfactory behavior // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005921 // gap junction // inferred from electronic annotation /// 0005922 // connexon complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 1369830_at NM_031085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031085.1 /DB_XREF=gi:13592026 /GEN=Prkch /FEA=FLmRNA /CNT=2 /TID=Rn.10398.1 /TIER=FL /STK=1 /UG=Rn.10398 /LL=81749 /DEF=Rattus norvegicus protein kinase C-eta (Prkch), mRNA. /PROD=protein kinase C-eta /FL=gb:NM_031085.1 NM_031085 protein kinase C, eta Prkch 81749 NM_031085 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1369831_at NM_012916 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012916.1 /DB_XREF=gi:6978566 /GEN=Bcan /FEA=FLmRNA /CNT=2 /TID=Rn.10315.1 /TIER=FL /STK=1 /UG=Rn.10315 /LL=25393 /DEF=Rattus norvegicus Brevican (Bcan), mRNA. /PROD=brevican (brain specific proteoglycan in theaggrecan family) /FL=gb:NM_012916.1 NM_012916 brevican Bcan 25393 NM_001033665 /// NM_012916 0007155 // cell adhesion // inferred from electronic annotation /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0048168 // regulation of neuronal synaptic plasticity // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005624 // membrane fraction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // inferred from electronic annotation 1369832_at NM_020302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020302.1 /DB_XREF=gi:9945325 /GEN=Adam3 /FEA=FLmRNA /CNT=2 /TID=Rn.42918.1 /TIER=FL /STK=1 /UG=Rn.42918 /LL=57021 /DEF=Rattus norvegicus a disintegrin and metalloprotease domain 3 (cyritestin) (Adam3), mRNA. /PROD=a disintegrin and metalloprotease domain 3 /FL=gb:NM_020302.1 NM_020302 ADAM metallopeptidase domain 3A (cyritestin 1) Adam3a 57021 NM_020302 0006508 // proteolysis // inferred from electronic annotation /// 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation /// 0007339 // binding of sperm to zona pellucida // not recorded 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1369833_at NM_020077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020077.1 /DB_XREF=gi:9910119 /GEN=Adam2 /FEA=FLmRNA /CNT=2 /TID=Rn.42917.1 /TIER=FL /STK=1 /UG=Rn.42917 /LL=56806 /DEF=Rattus norvegicus A disintegrin and metalloprotease domain 2 (Fertilin beta) (Adam2), mRNA. /PROD=a disintegrin and metalloprotease domain 2(fertilin beta) /FL=gb:NM_020077.1 NM_020077 ADAM metallopeptidase domain 2 Adam2 56806 NM_020077 0006508 // proteolysis // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0008542 // visual learning // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0009566 // fertilization // non-traceable author statement /// 0030534 // adult behavior // inferred from electronic annotation /// 0030534 // adult behavior // not recorded 0001669 // acrosomal vesicle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1369834_at NM_012742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012742.1 /DB_XREF=gi:6981033 /GEN=Hnf3a /FEA=FLmRNA /CNT=2 /TID=Rn.10470.1 /TIER=FL /STK=1 /UG=Rn.10470 /LL=25098 /DEF=Rattus norvegicus Hepatocyte nuclear factor 3 alpha (Hnf3a), mRNA. /PROD=hepatocyte nuclear factor 3 alpha /FL=gb:NM_012742.1 NM_012742 forkhead box A1 Foxa1 25098 NM_012742 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008634 // negative regulation of survival gene product expression // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0032355 // response to estradiol stimulus // not recorded /// 0033148 // positive regulation of estrogen receptor signaling pathway // not recorded /// 0035239 // tube morphogenesis // not recorded /// 0042445 // hormone metabolic process // not recorded /// 0042593 // glucose homeostasis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045931 // positive regulation of mitotic cell cycle // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048665 // neuron fate specification // not recorded /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // not recorded /// 0060487 // lung epithelial cell differentiation // not recorded /// 0060528 // secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development // not recorded /// 0060738 // epithelial-mesenchymal signaling involved in prostate gland development // not recorded /// 0060740 // prostate gland epithelium morphogenesis // not recorded /// 0060741 // prostate gland stromal morphogenesis // not recorded /// 0060743 // epithelial cell maturation involved in prostate gland development // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0008134 // transcription factor binding // inferred from physical interaction /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from direct assay /// 0019904 // protein domain specific binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from physical interaction 1369835_at NM_012616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012616.1 /DB_XREF=gi:6981303 /GEN=Omp /FEA=FLmRNA /CNT=2 /TID=Rn.9720.1 /TIER=ConsEnd /STK=0 /UG=Rn.9720 /LL=24612 /DEF=Rattus norvegicus Olfactory marker protein (Omp), mRNA. /PROD=olfactory marker protein /FL=gb:NM_012616.1 NM_012616 olfactory marker protein Omp 24612 NM_012616 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007608 // sensory perception of smell // not recorded /// 0007608 // sensory perception of smell // non-traceable author statement /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // non-traceable author statement /// 0030424 // axon // not recorded /// 0043025 // neuronal cell body // not recorded 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // non-traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay 1369836_at NM_020096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020096.1 /DB_XREF=gi:9910233 /GEN=Garg16 /FEA=FLmRNA /CNT=2 /TID=Rn.48677.1 /TIER=FL /STK=1 /UG=Rn.48677 /LL=56824 /DEF=Rattus norvegicus glucocorticoid-attenuated response gene 16 product (Garg16), mRNA. /PROD=glucocorticoid-attenuated response gene 16product /FL=gb:NM_020096.1 NM_020096 interferon-induced protein with tetratricopeptide repeats 1 Ifit1 56824 NM_020096 0035457 // cellular response to interferon-alpha // not recorded 0005488 // binding // inferred from electronic annotation 1369837_at J03536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J03536.1 /DB_XREF=gi:204149 /FEA=FLmRNA /CNT=2 /TID=Rn.44472.1 /TIER=ConsEnd /STK=0 /UG=Rn.44472 /LL=60671 /UG_GENE=Gulo /UG_TITLE=L-gulono-gamma-lactone oxidase /DEF=Rat L-gulono-gamma-lactone oxidase mRNA, complete cds. /FL=gb:NM_022220.1 J03536 gulonolactone (L-) oxidase Gulo 60671 NM_022220 0009058 // biosynthetic process // inferred from electronic annotation /// 0019853 // L-ascorbic acid biosynthetic process // not recorded /// 0019853 // L-ascorbic acid biosynthetic process // traceable author statement /// 0019853 // L-ascorbic acid biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // traceable author statement /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003885 // D-arabinono-1,4-lactone oxidase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016899 // oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor // inferred from electronic annotation /// 0050105 // L-gulonolactone oxidase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1369838_at NM_022528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022528.1 /DB_XREF=gi:11968111 /GEN=Hif3a /FEA=FLmRNA /CNT=2 /TID=Rn.54459.1 /TIER=FL /STK=1 /UG=Rn.54459 /LL=64345 /DEF=Rattus norvegicus hypoxia inducible factor 3 alpha (Hif3a), mRNA. /PROD=hypoxia inducible factor 3 alpha /FL=gb:NM_022528.1 NM_022528 hypoxia inducible factor 3, alpha subunit Hif3a 64345 NM_022528 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // traceable author statement /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003704 // specific RNA polymerase II transcription factor activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1369839_at NM_022217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022217.1 /DB_XREF=gi:11560001 /GEN=Amph1 /FEA=FLmRNA /CNT=2 /TID=Rn.44463.1 /TIER=FL /STK=1 /UG=Rn.44463 /LL=60668 /DEF=Rattus norvegicus amphiphysin (Amph1), mRNA. /PROD=amphiphysin /FL=gb:NM_022217.1 NM_022217 amphiphysin Amph 60668 NM_022217 0007612 // learning // inferred from electronic annotation /// 0007612 // learning // not recorded /// 0043547 // positive regulation of GTPase activity // inferred from direct assay /// 0045807 // positive regulation of endocytosis // inferred from mutant phenotype /// 0048488 // synaptic vesicle endocytosis // inferred from electronic annotation /// 0048488 // synaptic vesicle endocytosis // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0008021 // synaptic vesicle // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043679 // axon terminus // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1369840_at NM_134379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134379.1 /DB_XREF=gi:19705486 /GEN=UST4r /FEA=FLmRNA /CNT=2 /TID=Rn.81213.1 /TIER=FL /STK=1 /UG=Rn.81213 /DEF=Rattus norvegicus integral membrane transport protein UST4r (UST4r), mRNA. /PROD=integral membrane transport protein UST4r /FL=gb:NM_134379.1 NM_134379 integral membrane transport protein UST4r UST4r 171397 NM_134379 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1369841_at NM_021863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021863.1 /DB_XREF=gi:11177909 /GEN=Hspt70 /FEA=FLmRNA /CNT=2 /TID=Rn.44325.1 /TIER=FL /STK=1 /UG=Rn.44325 /LL=60460 /DEF=Rattus norvegicus testis-specific heat shock protein-related gene hst70 (Hspt70), mRNA. /PROD=testis-specific heat shock protein-related genehst70 /FL=gb:NM_021863.1 NM_021863 heat shock protein alpha 2 Hspa2 60460 NM_021863 0006950 // response to stress // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1369842_at NM_022227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022227.1 /DB_XREF=gi:11560019 /GEN=Blinac /FEA=FLmRNA /CNT=2 /TID=Rn.44631.1 /TIER=FL /STK=1 /UG=Rn.44631 /LL=63866 /DEF=Rattus norvegicus amiloride-sensitive Na+ channel (BLINaC gene) (Blinac), mRNA. /PROD=amiloride-sensitive Na+ channel (BLINaC gene) /FL=gb:NM_022227.1 NM_022227 amiloride-sensitive cation channel 5, intestinal Accn5 63866 NM_022227 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0015280 // ligand-gated sodium channel activity // inferred from direct assay 1369843_at NM_024485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024485.1 /DB_XREF=gi:13324699 /GEN=Chrna1 /FEA=FLmRNA /CNT=2 /TID=Rn.44633.1 /TIER=FL /STK=1 /UG=Rn.44633 /LL=79557 /DEF=Rattus norvegicus cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle) (Chrna1), mRNA. /PROD=cholinergic receptor, nicotinic, alphapolypeptide 1 (muscle) /FL=gb:NM_024485.1 NM_024485 cholinergic receptor, nicotinic, alpha 1 (muscle) Chrna1 79557 NM_024485 0003009 // skeletal muscle contraction // inferred from electronic annotation /// 0003009 // skeletal muscle contraction // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0007528 // neuromuscular junction development // inferred from electronic annotation /// 0007528 // neuromuscular junction development // not recorded /// 0019228 // regulation of action potential in neuron // inferred from electronic annotation /// 0019228 // regulation of action potential in neuron // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded /// 0046716 // muscle cell homeostasis // inferred from electronic annotation /// 0046716 // muscle cell homeostasis // not recorded /// 0048630 // skeletal muscle tissue growth // inferred from electronic annotation /// 0048630 // skeletal muscle tissue growth // not recorded /// 0050881 // musculoskeletal movement // not recorded /// 0050881 // musculoskeletal movement // inferred from electronic annotation /// 0050905 // neuromuscular process // inferred from electronic annotation /// 0050905 // neuromuscular process // not recorded /// 0070050 // neuron homeostasis // inferred from electronic annotation /// 0070050 // neuron homeostasis // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // not recorded /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // traceable author statement /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0031594 // neuromuscular junction // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from direct assay /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // not recorded /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0015464 // acetylcholine receptor activity // inferred from electronic annotation /// 0015464 // acetylcholine receptor activity // not recorded /// 0042166 // acetylcholine binding // not recorded /// 0042166 // acetylcholine binding // inferred from electronic annotation 1369844_at NM_017069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017069.1 /DB_XREF=gi:8393386 /GEN=Gabra3 /FEA=FLmRNA /CNT=2 /TID=Rn.10367.1 /TIER=FL /STK=1 /UG=Rn.10367 /LL=24947 /DEF=Rattus norvegicus Gamma-animobutyric acid (GABA) A receptor, alpha 3 (Gabra3), mRNA. /PROD=gamma-animobutyric acid (GABA) A receptor, alpha3 /FL=gb:NM_017069.1 NM_017069 gamma-aminobutyric acid (GABA) A receptor, alpha 3 Gabra3 24947 NM_017069 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from mutant phenotype 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004890 // GABA-A receptor activity // inferred from direct assay /// 0004890 // GABA-A receptor activity // traceable author statement /// 0004890 // GABA-A receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369845_at NM_057184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057184.1 /DB_XREF=gi:17105331 /GEN=Chrna6 /FEA=FLmRNA /CNT=2 /TID=Rn.9696.1 /TIER=FL /STK=1 /UG=Rn.9696 /LL=81721 /DEF=Rattus norvegicus cholinergic receptor, nicotinic, alpha polypeptide 6 (Chrna6), mRNA. /PROD=acetylcholine receptor alpha 6 neural /FL=gb:NM_057184.1 NM_057184 cholinergic receptor, nicotinic, alpha 6 Chrna6 81721 NM_057184 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0014059 // regulation of dopamine secretion // inferred from electronic annotation /// 0014059 // regulation of dopamine secretion // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051899 // membrane depolarization // inferred from electronic annotation /// 0051899 // membrane depolarization // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from direct assay /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from electronic annotation /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // not recorded /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008144 // drug binding // inferred from direct assay 1369846_at NM_022195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022195.1 /DB_XREF=gi:11559965 /GEN=Ivl /FEA=FLmRNA /CNT=2 /TID=Rn.44377.1 /TIER=FL /STK=1 /UG=Rn.44377 /LL=60583 /DEF=Rattus norvegicus involucrin gene (Ivl), mRNA. /PROD=involucrin gene /FL=gb:NM_022195.1 NM_022195 involucrin Ivl 60583 NM_022195 0010224 // response to UV-B // inferred from electronic annotation /// 0010224 // response to UV-B // not recorded /// 0018149 // peptide cross-linking // inferred from electronic annotation /// 0018149 // peptide cross-linking // not recorded /// 0030216 // keratinocyte differentiation // not recorded /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0031424 // keratinization // inferred from electronic annotation 0001533 // cornified envelope // inferred from electronic annotation /// 0001533 // cornified envelope // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005198 // structural molecule activity // not recorded /// 0030674 // protein binding, bridging // inferred from electronic annotation /// 0030674 // protein binding, bridging // not recorded 1369847_at NM_017303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017303.1 /DB_XREF=gi:8393642 /GEN=Kcnab1 /FEA=FLmRNA /CNT=2 /TID=Rn.32090.1 /TIER=FL /STK=1 /UG=Rn.32090 /LL=29737 /DEF=Rattus norvegicus potassium voltage gated channel, shaker related subfamily, beta member 1 (Kcnab1), mRNA. /PROD=potassium voltage gated channel, shaker relatedsubfamily, beta member 1 /FL=gb:NM_017303.1 NM_017303 potassium voltage-gated channel, shaker-related subfamily, beta member 1 Kcnab1 29737 NM_017303 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1369848_at NM_023966 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023966.1 /DB_XREF=gi:13027417 /GEN=Kcns2 /FEA=FLmRNA /CNT=2 /TID=Rn.64498.1 /TIER=FL /STK=1 /UG=Rn.64498 /LL=66022 /DEF=Rattus norvegicus potassium channel, alpha subunit (kv9.2 gene) (Kcns2), mRNA. /PROD=potassium channel, alpha subunit (kv9.2 gene) /FL=gb:NM_023966.1 NM_023966 potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2 Kcns2 66022 NM_023966 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1369849_at NM_020543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020543.2 /DB_XREF=gi:17975590 /GEN=Cnr2 /FEA=FLmRNA /CNT=2 /TID=Rn.48776.1 /TIER=FL /STK=1 /UG=Rn.48776 /LL=57302 /DEF=Rattus norvegicus cannabinoid receptor 2 gene (Cnr2), mRNA. /PROD=cannabinoid receptor 2 gene /FL=gb:AF218846.1 gb:NM_020543.2 NM_020543 cannabinoid receptor 2 (macrophage) Cnr2 57302 NM_001164142 /// NM_001164143 /// NM_020543 0001975 // response to amphetamine // inferred from expression pattern /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007610 // behavior // inferred from direct assay /// 0019233 // sensory perception of pain // inferred from mutant phenotype /// 0032229 // negative regulation of synaptic transmission, GABAergic // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from mutant phenotype /// 0033004 // negative regulation of mast cell activation // inferred from direct assay /// 0045759 // negative regulation of action potential // inferred from mutant phenotype /// 0050728 // negative regulation of inflammatory response // inferred from direct assay /// 0051001 // negative regulation of nitric-oxide synthase activity // inferred from mutant phenotype 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from mutant phenotype /// 0030425 // dendrite // inferred from direct assay /// 0030425 // dendrite // inferred from electronic annotation /// 0031234 // extrinsic to internal side of plasma membrane // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043204 // perikaryon // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from direct assay /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004949 // cannabinoid receptor activity // inferred from direct assay /// 0004949 // cannabinoid receptor activity // inferred from electronic annotation 1369850_at NM_022228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022228.1 /DB_XREF=gi:11560021 /GEN=Ugt2a1 /FEA=FLmRNA /CNT=2 /TID=Rn.44636.1 /TIER=FL /STK=1 /UG=Rn.44636 /LL=63867 /DEF=Rattus norvegicus UDP glycosyltransferase 2 family, polypeptide A1 (Ugt2a1), mRNA. /PROD=UDP-glucuronosyltransferase 2A1 precursor /FL=gb:NM_022228.1 NM_022228 UDP glucuronosyltransferase 2 family, polypeptide A1 Ugt2a1 63867 NM_022228 0007608 // sensory perception of smell // inferred from direct assay /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009636 // response to toxin // traceable author statement /// 0050896 // response to stimulus // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0015020 // glucuronosyltransferase activity // not recorded /// 0015020 // glucuronosyltransferase activity // traceable author statement /// 0015020 // glucuronosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1369851_at NM_030860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030860.1 /DB_XREF=gi:13540682 /GEN=Mef2d /FEA=FLmRNA /CNT=2 /TID=Rn.32099.1 /TIER=FL /STK=1 /UG=Rn.32099 /LL=81518 /DEF=Rattus norvegicus myocyte enhancer factor 2D (Mef2d), mRNA. /PROD=myocyte enhancer factor 2D /FL=gb:NM_030860.1 NM_030860 myocyte enhancer factor 2D Mef2d 81518 NM_030860 0001649 // osteoblast differentiation // not recorded /// 0001958 // endochondral ossification // not recorded /// 0002062 // chondrocyte differentiation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1369852_at NM_017143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017143.1 /DB_XREF=gi:8393339 /GEN=F10 /FEA=FLmRNA /CNT=2 /TID=Rn.21393.1 /TIER=FL /STK=1 /UG=Rn.21393 /LL=29243 /DEF=Rattus norvegicus coagulation factor X (F10), mRNA. /PROD=coagulation factor X /FL=gb:NM_017143.1 NM_017143 coagulation factor X F10 29243 NM_017143 0006508 // proteolysis // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from direct assay /// 0007596 // blood coagulation // inferred from electronic annotation /// 0007598 // blood coagulation, extrinsic pathway // not recorded /// 0051897 // positive regulation of protein kinase B signaling cascade // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from direct assay /// 0004252 // serine-type endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005543 // phospholipid binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1369853_at NM_021700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021700.1 /DB_XREF=gi:11067438 /GEN=LOC60329 /FEA=FLmRNA /CNT=2 /TID=Rn.42927.1 /TIER=FL /STK=1 /UG=Rn.42927 /LL=60329 /DEF=Rattus norvegicus transcriptional regulator, Relax (LOC60329), mRNA. /PROD=transcriptional regulator, Relax /FL=gb:NM_021700.1 NM_021700 neurogenin 3 Neurog3 60329 NM_021700 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007275 // multicellular organismal development // not recorded /// 0007417 // central nervous system development // inferred from expression pattern /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0045449 // regulation of transcription // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // inferred from expression pattern /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0044424 // intracellular part // not recorded /// 0044424 // intracellular part // inferred from electronic annotation 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0016563 // transcription activator activity // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation 1369854_a_at NM_031755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031755.1 /DB_XREF=gi:13929059 /GEN=Ceacam1 /FEA=FLmRNA /CNT=2 /TID=Rn.2382.1 /TIER=FL /STK=1 /UG=Rn.2382 /LL=81613 /DEF=Rattus norvegicus carcinoembryonic antigen-related cell adhesion molecule (Ceacam1), mRNA. /PROD=carcinoembryonic antigen-related cell adhesionmolecule /FL=gb:NM_031755.1 NM_031755 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) Ceacam1 81613 NM_001033860 /// NM_001033861 /// NM_001033862 /// NM_031755 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // inferred from direct assay /// 0043406 // positive regulation of MAP kinase activity // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0019901 // protein kinase binding // inferred from physical interaction 1369855_at NM_017018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017018.1 /DB_XREF=gi:8393563 /GEN=Hrh1 /FEA=FLmRNA /CNT=2 /TID=Rn.48654.1 /TIER=FL /STK=1 /UG=Rn.48654 /LL=24448 /DEF=Rattus norvegicus Histamine receptor H1 (Hrh1), mRNA. /PROD=histamine receptor H1 /FL=gb:NM_017018.1 NM_017018 histamine receptor H 1 Hrh1 24448 NM_017018 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007199 // G-protein signaling, coupled to cGMP nucleotide second messenger // traceable author statement /// 0007268 // synaptic transmission // inferred from direct assay /// 0009629 // response to gravity // inferred from expression pattern /// 0010894 // negative regulation of steroid biosynthetic process // inferred from mutant phenotype /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from direct assay /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004969 // histamine receptor activity // traceable author statement /// 0004969 // histamine receptor activity // inferred from electronic annotation /// 0051381 // histamine binding // inferred from mutant phenotype 1369856_at NM_012768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012768.1 /DB_XREF=gi:6978780 /GEN=Drd5 /FEA=FLmRNA /CNT=2 /TID=Rn.44470.1 /TIER=FL /STK=1 /UG=Rn.44470 /LL=25195 /DEF=Rattus norvegicus Dopamine receptor D5 (Drd5), mRNA. /PROD=dopamine receptor D5 /FL=gb:NM_012768.1 NM_012768 dopamine receptor D5 Drd5 25195 NM_012768 0001963 // synaptic transmission, dopaminergic // inferred from mutant phenotype /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0001975 // response to amphetamine // not recorded /// 0001992 // regulation of systemic arterial blood pressure by vasopressin // inferred from electronic annotation /// 0001992 // regulation of systemic arterial blood pressure by vasopressin // not recorded /// 0001994 // norepinephrine-epinephrine vasoconstriction involved in regulation of systemic arterial blood pressure // inferred from electronic annotation /// 0001994 // norepinephrine-epinephrine vasoconstriction involved in regulation of systemic arterial blood pressure // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from mutant phenotype /// 0006800 // oxygen and reactive oxygen species metabolic process // inferred from electronic annotation /// 0006800 // oxygen and reactive oxygen species metabolic process // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from direct assay /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007191 // activation of adenylate cyclase activity by dopamine receptor signaling pathway // inferred from mutant phenotype /// 0007191 // activation of adenylate cyclase activity by dopamine receptor signaling pathway // not recorded /// 0007191 // activation of adenylate cyclase activity by dopamine receptor signaling pathway // inferred from electronic annotation /// 0007212 // dopamine receptor signaling pathway // inferred from direct assay /// 0007212 // dopamine receptor signaling pathway // inferred from mutant phenotype /// 0007617 // mating behavior // inferred from electronic annotation /// 0007617 // mating behavior // not recorded /// 0008306 // associative learning // not recorded /// 0008306 // associative learning // inferred from electronic annotation /// 0008542 // visual learning // inferred from mutant phenotype /// 0019226 // transmission of nerve impulse // inferred from electronic annotation /// 0019226 // transmission of nerve impulse // not recorded /// 0030336 // negative regulation of cell migration // inferred from mutant phenotype /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from mutant phenotype /// 0033861 // negative regulation of NAD(P)H oxidase activity // inferred from electronic annotation /// 0033861 // negative regulation of NAD(P)H oxidase activity // not recorded /// 0042060 // wound healing // inferred from electronic annotation /// 0042060 // wound healing // not recorded /// 0042220 // response to cocaine // inferred from electronic annotation /// 0042220 // response to cocaine // not recorded /// 0045762 // positive regulation of adenylate cyclase activity // not recorded /// 0045776 // negative regulation of blood pressure // inferred from electronic annotation /// 0045776 // negative regulation of blood pressure // not recorded /// 0045924 // regulation of female receptivity // inferred from electronic annotation /// 0045924 // regulation of female receptivity // not recorded /// 0046960 // sensitization // inferred from electronic annotation /// 0046960 // sensitization // not recorded /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from mutant phenotype /// 0060292 // long term synaptic depression // inferred from electronic annotation /// 0060292 // long term synaptic depression // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from direct assay /// 0031526 // brush border membrane // not recorded /// 0031526 // brush border membrane // inferred from electronic annotation 0001588 // dopamine receptor activity, coupled via Gs // not recorded /// 0001588 // dopamine receptor activity, coupled via Gs // inferred from electronic annotation /// 0001589 // dopamine D5 receptor activity // inferred from mutant phenotype /// 0001589 // dopamine D5 receptor activity // not recorded /// 0001589 // dopamine D5 receptor activity // inferred from electronic annotation /// 0001965 // G-protein alpha-subunit binding // inferred from physical interaction /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004952 // dopamine receptor activity // inferred from direct assay /// 0004952 // dopamine receptor activity // not recorded /// 0004952 // dopamine receptor activity // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0035240 // dopamine binding // not recorded /// 0035240 // dopamine binding // inferred from electronic annotation 1369857_a_at U81518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U81518.1 /DB_XREF=gi:1766023 /GEN=UT3 /FEA=FLmRNA /CNT=1 /TID=Rn.10654.2 /TIER=FL /STK=1 /UG=Rn.10654 /LL=54301 /DEF=Rattus norvegicus urea transporter (UT3) mRNA, complete cds. /PROD=urea transporter /FL=gb:U81518.1 U81518 solute carrier family 14 (urea transporter), member 1 Slc14a1 54301 NM_019346 0006833 // water transport // not recorded /// 0006833 // water transport // inferred from electronic annotation /// 0015840 // urea transport // inferred from direct assay /// 0015840 // urea transport // not recorded /// 0015840 // urea transport // inferred from electronic annotation /// 0055085 // transmembrane transport // not recorded 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005372 // water transmembrane transporter activity // not recorded /// 0005372 // water transmembrane transporter activity // inferred from electronic annotation /// 0015204 // urea transmembrane transporter activity // inferred from direct assay /// 0015204 // urea transmembrane transporter activity // not recorded /// 0015204 // urea transmembrane transporter activity // inferred from electronic annotation /// 0034450 // ubiquitin-ubiquitin ligase activity // not recorded /// 0034450 // ubiquitin-ubiquitin ligase activity // inferred from electronic annotation 1369858_at NM_012706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012706.1 /DB_XREF=gi:6980989 /GEN=Grpr /FEA=FLmRNA /CNT=2 /TID=Rn.10316.1 /TIER=FL /STK=1 /UG=Rn.10316 /LL=24938 /DEF=Rattus norvegicus Gastrin-releasing peptide receptor (Grpr), mRNA. /PROD=gastrin-releasing peptide receptor /FL=gb:NM_012706.1 NM_012706 gastrin releasing peptide receptor Grpr 24938 NM_012706 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007611 // learning or memory // inferred from mutant phenotype /// 0035176 // social behavior // inferred from mutant phenotype /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from direct assay /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004946 // bombesin receptor activity // traceable author statement /// 0004946 // bombesin receptor activity // inferred from electronic annotation /// 0042923 // neuropeptide binding // inferred from direct assay 1369859_at NM_053344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053344.1 /DB_XREF=gi:18373317 /GEN=Nr5a1 /FEA=FLmRNA /CNT=2 /TID=Rn.81188.1 /TIER=FL /STK=1 /UG=Rn.81188 /DEF=Rattus norvegicus nuclear receptor subfamily 5, group A, member 1 (Nr5a1), mRNA. /PROD=nuclear receptor subfamily 5, group A, member 1 /FL=gb:NM_053344.1 NM_053344 nuclear receptor subfamily 5, group A, member 1 Nr5a1 83826 NM_001191099 /// XM_001055033 /// XM_001072904 /// XM_002726146 /// XM_002729159 0001553 // luteinization // inferred from electronic annotation /// 0001553 // luteinization // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0008584 // male gonad development // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0008585 // female gonad development // inferred from expression pattern /// 0009888 // tissue development // inferred from electronic annotation /// 0009888 // tissue development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030325 // adrenal gland development // inferred from electronic annotation /// 0030325 // adrenal gland development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0051457 // maintenance of protein location in nucleus // inferred from electronic annotation /// 0051457 // maintenance of protein location in nucleus // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // non-traceable author statement /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005543 // phospholipid binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369860_a_at U35315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U35315.1 /DB_XREF=gi:1399025 /FEA=FLmRNA /CNT=1 /TID=Rn.9935.2 /TIER=FL /STK=1 /UG=Rn.9935 /LL=25187 /UG_GENE=Htr2c /DEF=Rattus norvegicus serotonin 5-HT2C receptor mRNA, alternatively spliced truncated variant, complete cds. /PROD=serotonin 5-HT2c /FL=gb:U35315.1 U35315 5-hydroxytryptamine (serotonin) receptor 2C Htr2c 25187 NM_012765 0006182 // cGMP biosynthetic process // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007187 // G-protein signaling, coupled to cyclic nucleotide second messenger // traceable author statement /// 0007208 // activation of phospholipase C activity by serotonin receptor signaling pathway // inferred from direct assay /// 0007210 // serotonin receptor signaling pathway // not recorded /// 0007631 // feeding behavior // inferred from mutant phenotype /// 0014054 // positive regulation of gamma-aminobutyric acid secretion // inferred from mutant phenotype /// 0014057 // positive regulation of acetylcholine secretion // inferred from mutant phenotype /// 0031100 // organ regeneration // inferred from expression pattern /// 0031583 // activation of phospholipase D activity by G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0035095 // behavioral response to nicotine // inferred from mutant phenotype /// 0040013 // negative regulation of locomotion // inferred from mutant phenotype /// 0042493 // response to drug // inferred from mutant phenotype /// 0042493 // response to drug // not recorded /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype /// 0045963 // negative regulation of dopamine metabolic process // inferred from mutant phenotype /// 0046489 // phosphoinositide biosynthetic process // not recorded /// 0048016 // inositol phosphate-mediated signaling // inferred from direct assay /// 0051209 // release of sequestered calcium ion into cytosol // not recorded /// 0051930 // regulation of sensory perception of pain // inferred from mutant phenotype /// 0070371 // ERK1 and ERK2 cascade // not recorded 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004435 // phosphoinositide phospholipase C activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // inferred from direct assay /// 0004993 // serotonin receptor activity // inferred from mutant phenotype /// 0004993 // serotonin receptor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008144 // drug binding // not recorded /// 0051378 // serotonin binding // not recorded 1369861_at NM_021841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021841.1 /DB_XREF=gi:11177871 /GEN=Gabra6 /FEA=FLmRNA /CNT=2 /TID=Rn.44315.1 /TIER=FL /STK=1 /UG=Rn.44315 /LL=29708 /DEF=Rattus norvegicus gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 6 (Gabra6), mRNA. /PROD=gamma-aminobutyric acid (GABA-A) receptor,subunit alpha 6 /FL=gb:NM_021841.1 NM_021841 gamma-aminobutyric acid (GABA) A receptor, alpha 6 Gabra6 29708 NM_021841 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from physical interaction /// 0051932 // synaptic transmission, GABAergic // inferred from mutant phenotype 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0032809 // neuronal cell body membrane // inferred from direct assay /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043083 // synaptic cleft // inferred from mutant phenotype /// 0043235 // receptor complex // inferred from direct assay /// 0045202 // synapse // inferred from mutant phenotype /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004890 // GABA-A receptor activity // inferred from direct assay /// 0004890 // GABA-A receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005237 // inhibitory extracellular ligand-gated ion channel activity // inferred from mutant phenotype /// 0005254 // chloride channel activity // traceable author statement /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0008503 // benzodiazepine receptor activity // inferred from mutant phenotype /// 0022851 // GABA-gated chloride ion channel activity // inferred from mutant phenotype 1369862_at NM_017034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017034.1 /DB_XREF=gi:8393958 /GEN=Pim1 /FEA=FLmRNA /CNT=2 /TID=Rn.34888.1 /TIER=FL /STK=1 /UG=Rn.34888 /LL=24649 /DEF=Rattus norvegicus Pim-1 oncogene (Pim1), mRNA. /PROD=pim-1 oncogene /FL=gb:NM_017034.1 NM_017034 pim-1 oncogene Pim1 24649 NM_017034 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from sequence or structural similarity /// 0008283 // cell proliferation // inferred from electronic annotation /// 0031659 // positive regulation of cyclin-dependent protein kinase activity involved in G1/S // inferred from electronic annotation /// 0031659 // positive regulation of cyclin-dependent protein kinase activity involved in G1/S // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // not recorded /// 0030145 // manganese ion binding // inferred from sequence or structural similarity /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369863_at NM_017270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017270.1 /DB_XREF=gi:8392857 /GEN=Adh4 /FEA=FLmRNA /CNT=2 /TID=Rn.10302.1 /TIER=FL /STK=1 /UG=Rn.10302 /LL=29646 /DEF=Rattus norvegicus alcohol dehydrogenase 4 (class II), pi polypeptide (Adh4), mRNA. /PROD=alcohol dehydrogenase 4 (class II), pipolypeptide /FL=gb:NM_017270.1 NM_017270 alcohol dehydrogenase 4 (class II), pi polypeptide /// alcohol dehydrogenase 4-like Adh4 /// LOC100364917 100364917 /// 29646 NM_017270 /// XM_002726054 0001523 // retinoid metabolic process // inferred from electronic annotation /// 0001523 // retinoid metabolic process // not recorded /// 0003016 // respiratory system process // inferred from electronic annotation /// 0006066 // alcohol metabolic process // not recorded /// 0006067 // ethanol metabolic process // not recorded /// 0006069 // ethanol oxidation // inferred from direct assay /// 0006069 // ethanol oxidation // inferred from electronic annotation /// 0006069 // ethanol oxidation // not recorded /// 0006081 // cellular aldehyde metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0018119 // peptidyl-cysteine S-nitrosylation // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0042375 // quinone cofactor metabolic process // not recorded /// 0042572 // retinol metabolic process // not recorded /// 0042698 // ovulation cycle // inferred from expression pattern /// 0045777 // positive regulation of blood pressure // inferred from electronic annotation /// 0046164 // alcohol catabolic process // not recorded /// 0046294 // formaldehyde catabolic process // inferred from electronic annotation /// 0051409 // response to nitrosative stress // inferred from electronic annotation /// 0051775 // response to redox state // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003960 // NADPH:quinone reductase activity // not recorded /// 0004022 // alcohol dehydrogenase (NAD) activity // inferred from direct assay /// 0004022 // alcohol dehydrogenase (NAD) activity // not recorded /// 0004022 // alcohol dehydrogenase (NAD) activity // inferred from electronic annotation /// 0004024 // alcohol dehydrogenase activity, zinc-dependent // not recorded /// 0004032 // aldehyde reductase activity // not recorded /// 0004745 // retinol dehydrogenase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005503 // all-trans retinal binding // not recorded /// 0005504 // fatty acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016620 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor // not recorded /// 0018467 // formaldehyde dehydrogenase activity // inferred from electronic annotation /// 0019115 // benzaldehyde dehydrogenase activity // not recorded /// 0019841 // retinol binding // not recorded /// 0035276 // ethanol binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from direct assay /// 0051287 // NAD or NADH binding // not recorded /// 0051903 // S-(hydroxymethyl)glutathione dehydrogenase activity // inferred from electronic annotation 1369864_a_at NM_053962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053962.1 /DB_XREF=gi:16758849 /GEN=Sds /FEA=FLmRNA /CNT=2 /TID=Rn.9918.1 /TIER=FL /STK=1 /UG=Rn.9918 /LL=117032 /DEF=Rattus norvegicus serine dehydratase (Sds), mRNA. /PROD=serine dehydratase /FL=gb:NM_053962.1 NM_053962 serine dehydratase Sds 25044 NM_053962 0006094 // gluconeogenesis // traceable author statement /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006565 // L-serine catabolic process // inferred from electronic annotation /// 0006565 // L-serine catabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0033590 // response to cobalamin // inferred from expression pattern /// 0042866 // pyruvate biosynthetic process // inferred from electronic annotation /// 0042866 // pyruvate biosynthetic process // not recorded /// 0043200 // response to amino acid stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003941 // L-serine ammonia-lyase activity // not recorded /// 0003941 // L-serine ammonia-lyase activity // traceable author statement /// 0003941 // L-serine ammonia-lyase activity // inferred from electronic annotation /// 0004794 // L-threonine ammonia-lyase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046983 // protein dimerization activity // inferred from direct assay 1369865_at NM_013121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013121.1 /DB_XREF=gi:6978624 /GEN=Cd28 /FEA=FLmRNA /CNT=2 /TID=Rn.10327.1 /TIER=FL /STK=1 /UG=Rn.10327 /LL=25660 /DEF=Rattus norvegicus CD28 antigen (Cd28), mRNA. /PROD=CD28 antigen /FL=gb:NM_013121.1 NM_013121 Cd28 molecule Cd28 25660 NM_013121 0002863 // positive regulation of inflammatory response to antigenic stimulus // inferred from electronic annotation /// 0002863 // positive regulation of inflammatory response to antigenic stimulus // not recorded /// 0006955 // immune response // traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0008624 // induction of apoptosis by extracellular signals // inferred from electronic annotation /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0031295 // T cell costimulation // inferred from mutant phenotype /// 0031295 // T cell costimulation // not recorded /// 0031295 // T cell costimulation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from sequence or structural similarity /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042110 // T cell activation // inferred from mutant phenotype /// 0045060 // negative thymic T cell selection // inferred from electronic annotation /// 0045060 // negative thymic T cell selection // not recorded /// 0045066 // regulatory T cell differentiation // not recorded /// 0045086 // positive regulation of interleukin-2 biosynthetic process // not recorded /// 0045086 // positive regulation of interleukin-2 biosynthetic process // inferred from sequence or structural similarity /// 0045086 // positive regulation of interleukin-2 biosynthetic process // inferred from electronic annotation /// 0045840 // positive regulation of mitosis // not recorded /// 0045840 // positive regulation of mitosis // inferred from sequence or structural similarity /// 0046641 // positive regulation of alpha-beta T cell proliferation // inferred from electronic annotation /// 0046641 // positive regulation of alpha-beta T cell proliferation // not recorded /// 0048304 // positive regulation of isotype switching to IgG isotypes // inferred from electronic annotation /// 0048304 // positive regulation of isotype switching to IgG isotypes // not recorded /// 0050690 // regulation of defense response to virus by virus // not recorded 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay 0005070 // SH3/SH2 adaptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0015026 // coreceptor activity // non-traceable author statement /// 0042803 // protein homodimerization activity // inferred from direct assay 1369866_at NM_020091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020091.1 /DB_XREF=gi:9910337 /GEN=LOC56825 /FEA=FLmRNA /CNT=2 /TID=Rn.48676.1 /TIER=FL /STK=1 /UG=Rn.48676 /LL=56825 /DEF=Rattus norvegicus prochymosin (LOC56825), mRNA. /PROD=prochymosin /FL=gb:NM_020091.1 NM_020091 chymosin Cym 56825 NM_020091 0006508 // proteolysis // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1369867_at U53883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U53883.1 /DB_XREF=gi:3342208 /FEA=FLmRNA /CNT=2 /TID=Rn.10603.1 /TIER=FL /STK=1 /UG=Rn.10603 /LL=25280 /UG_GENE=Siat8a /DEF=Rattus norvegicus alpha 2,8-sialyltransferase mRNA, complete cds. /PROD=alpha 2,8-sialyltransferase /FL=gb:NM_012813.1 gb:U53883.1 U53883 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 St8sia1 25280 NM_012813 0006486 // protein glycosylation // inferred from direct assay /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0034605 // cellular response to heat // inferred from electronic annotation /// 0034605 // cellular response to heat // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation 0008373 // sialyltransferase activity // inferred from direct assay /// 0008373 // sialyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1369868_at NM_053946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053946.1 /DB_XREF=gi:16758821 /GEN=IAG2 /FEA=FLmRNA /CNT=2 /TID=Rn.43578.1 /TIER=FL /STK=1 /UG=Rn.43578 /LL=116967 /DEF=Rattus norvegicus implantation-associated protein (IAG2), mRNA. /PROD=implantation-associated protein /FL=gb:NM_053946.1 NM_053946 magnesium transporter 1 Magt1 116967 NM_053946 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0008250 // oligosaccharyltransferase complex // not recorded /// 0008250 // oligosaccharyltransferase complex // inferred from sequence or structural similarity /// 0008250 // oligosaccharyltransferase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1369869_at NM_017164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017164.1 /DB_XREF=gi:8393044 /GEN=Cappa3 /FEA=FLmRNA /CNT=2 /TID=Rn.42865.1 /TIER=FL /STK=1 /UG=Rn.42865 /LL=29324 /DEF=Rattus norvegicus capping protein alpha 3 (Cappa3), mRNA. /PROD=capping protein alpha 3 /FL=gb:NM_017164.1 NM_017164 capping protein (actin filament) muscle Z-line, alpha 3 Capza3 29324 NM_017164 0007286 // spermatid development // inferred from expression pattern /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0051693 // actin filament capping // inferred from electronic annotation 0001669 // acrosomal vesicle // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0008290 // F-actin capping protein complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // not recorded 0003779 // actin binding // inferred from electronic annotation 1369870_at NM_053302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053302.1 /DB_XREF=gi:16757997 /GEN=Admr /FEA=FLmRNA /CNT=2 /TID=Rn.81053.1 /TIER=FL /STK=1 /UG=Rn.81053 /LL=29307 /DEF=Rattus norvegicus adrenomedullin receptor (Admr), mRNA. /PROD=adrenomedullin receptor /FL=gb:NM_053302.1 NM_053302 G protein-coupled receptor 182 Gpr182 29307 NM_053302 0001666 // response to hypoxia // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001605 // adrenomedullin receptor activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1369871_at NM_017123 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017123.1 /DB_XREF=gi:8392916 /GEN=Areg /FEA=FLmRNA /CNT=2 /TID=Rn.10568.1 /TIER=FL /STK=1 /UG=Rn.10568 /LL=29183 /DEF=Rattus norvegicus amphiregulin (Areg), mRNA. /PROD=amphiregulin /FL=gb:NM_017123.1 NM_017123 amphiregulin Areg 29183 NM_017123 0007173 // epidermal growth factor receptor signaling pathway // inferred from direct assay /// 0007173 // epidermal growth factor receptor signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007417 // central nervous system development // non-traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0014009 // glial cell proliferation // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0032355 // response to estradiol stimulus // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // not recorded /// 0042327 // positive regulation of phosphorylation // inferred from direct assay /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045668 // negative regulation of osteoblast differentiation // inferred from direct assay /// 0045740 // positive regulation of DNA replication // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from mutant phenotype /// 0051591 // response to cAMP // inferred from expression pattern /// 0060598 // dichotomous subdivision of terminal units involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060598 // dichotomous subdivision of terminal units involved in mammary gland duct morphogenesis // not recorded /// 0060744 // mammary gland branching involved in thelarche // inferred from electronic annotation /// 0060744 // mammary gland branching involved in thelarche // not recorded /// 0060749 // mammary gland alveolus development // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // not recorded /// 0060750 // epithelial cell proliferation involved in mammary gland duct elongation // inferred from electronic annotation /// 0060750 // epithelial cell proliferation involved in mammary gland duct elongation // not recorded 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005154 // epidermal growth factor receptor binding // inferred from direct assay /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // inferred from electronic annotation 1369872_a_at AF381978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF381978.1 /DB_XREF=gi:19070848 /FEA=FLmRNA /CNT=1 /TID=Rn.10326.2 /TIER=FL /STK=1 /UG=Rn.10326 /LL=171075 /UG_GENE=Fcer2a /DEF=Rattus norvegicus CD23 mRNA, complete cds. /PROD=CD23 /FL=gb:AF381978.1 AF381978 Fc fragment of IgE, low affinity II, receptor for (CD23) Fcer2 171075 NM_001033924 /// NM_133550 0002925 // positive regulation of humoral immune response mediated by circulating immunoglobulin // not recorded /// 0002925 // positive regulation of humoral immune response mediated by circulating immunoglobulin // inferred from electronic annotation /// 0051000 // positive regulation of nitric-oxide synthase activity // not recorded /// 0051000 // positive regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051712 // positive regulation of killing of cells of another organism // not recorded /// 0051712 // positive regulation of killing of cells of another organism // inferred from electronic annotation /// 0051773 // positive regulation of nitric-oxide synthase 2 biosynthetic process // not recorded /// 0051773 // positive regulation of nitric-oxide synthase 2 biosynthetic process // inferred from electronic annotation 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1369873_at NM_019136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019136.1 /DB_XREF=gi:9506414 /GEN=Avpr2 /FEA=FLmRNA /CNT=2 /TID=Rn.44344.1 /TIER=FL /STK=1 /UG=Rn.44344 /LL=25108 /DEF=Rattus norvegicus Vasopressin receptor V2 (Avpr2), mRNA. /PROD=vasopressin receptor V2 /FL=gb:NM_019136.1 NM_019136 arginine vasopressin receptor 2 Avpr2 25108 NM_019136 0003077 // negative regulation of diuresis // inferred from mutant phenotype /// 0003080 // negative regulation of natriuresis // inferred from mutant phenotype /// 0003084 // positive regulation of systemic arterial blood pressure // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // traceable author statement /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0021537 // telencephalon development // inferred from expression pattern /// 0032609 // interferon-gamma production // inferred from electronic annotation /// 0032609 // interferon-gamma production // not recorded /// 0034097 // response to cytokine stimulus // inferred from electronic annotation /// 0034097 // response to cytokine stimulus // not recorded /// 0045777 // positive regulation of blood pressure // inferred from mutant phenotype 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005000 // vasopressin receptor activity // inferred from mutant phenotype /// 0005000 // vasopressin receptor activity // traceable author statement /// 0005000 // vasopressin receptor activity // inferred from electronic annotation /// 0017046 // peptide hormone binding // traceable author statement 1369874_at NM_012961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012961.1 /DB_XREF=gi:6980979 /GEN=Gpr1 /FEA=FLmRNA /CNT=2 /TID=Rn.81208.1 /TIER=FL /STK=1 /UG=Rn.81208 /DEF=Rattus norvegicus G-protein copled receptor 1 (Gpr1), mRNA. /PROD=g-protein copled receptor 1 /FL=gb:NM_012961.1 NM_012961 G protein-coupled receptor 1 Gpr1 25457 NM_012961 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1369875_at NM_019310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019310.1 /DB_XREF=gi:9506808 /GEN=Il8ra /FEA=FLmRNA /CNT=2 /TID=Rn.44497.1 /TIER=FL /STK=1 /UG=Rn.44497 /LL=54258 /DEF=Rattus norvegicus interleukin 8 receptor, alpha (Il8ra), mRNA. /PROD=interleukin 8 receptor, alpha /FL=gb:NM_019310.1 NM_019310 interleukin 8 receptor, alpha Il8ra 54258 NM_019310 0006935 // chemotaxis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004918 // interleukin-8 receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0019959 // interleukin-8 binding // not recorded 1369876_at NM_021858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021858.1 /DB_XREF=gi:11177901 /GEN=LOC60449 /FEA=FLmRNA /CNT=2 /TID=Rn.44302.1 /TIER=FL /STK=1 /UG=Rn.44302 /LL=60449 /DEF=Rattus norvegicus G protein beta-subunit gene (LOC60449), mRNA. /PROD=guanine nucleotide-binding protein, beta-3subunit /FL=gb:NM_021858.1 NM_021858 guanine nucleotide binding protein (G protein), beta polypeptide 3 Gnb3 60449 NM_021858 0007165 // signal transduction // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded 0004871 // signal transducer activity // inferred from electronic annotation 1369877_at NM_031538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031538.1 /DB_XREF=gi:13928725 /GEN=Cd8a /FEA=FLmRNA /CNT=2 /TID=Rn.10306.1 /TIER=FL /STK=1 /UG=Rn.10306 /LL=24930 /DEF=Rattus norvegicus CD8 antigen, alpha-chain (Cd8a), mRNA. /PROD=CD8 antigen, alpha-chain /FL=gb:NM_031538.1 NM_031538 CD8a molecule Cd8a 24930 NM_031538 0002456 // T cell mediated immunity // inferred from electronic annotation /// 0002456 // T cell mediated immunity // not recorded /// 0006954 // inflammatory response // non-traceable author statement /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0042110 // T cell activation // inferred from mutant phenotype /// 0045065 // cytotoxic T cell differentiation // inferred from electronic annotation /// 0045065 // cytotoxic T cell differentiation // not recorded /// 0050850 // positive regulation of calcium-mediated signaling // inferred from electronic annotation /// 0050850 // positive regulation of calcium-mediated signaling // not recorded 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1369878_at NM_021860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021860.1 /DB_XREF=gi:11177905 /GEN=Ol1 /FEA=FLmRNA /CNT=2 /TID=Rn.44313.1 /TIER=FL /STK=1 /UG=Rn.44313 /LL=60451 /DEF=Rattus norvegicus Olfactory receptor (Ol1), mRNA. /PROD=Olfactory receptor /FL=gb:NM_021860.1 NM_021860 olfactory receptor 1654 Olr1654 60451 NM_021860 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from sequence or structural similarity 1369879_a_at NM_019381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019381.1 /DB_XREF=gi:9507182 /GEN=Tegt /FEA=FLmRNA /CNT=2 /TID=Rn.98.1 /TIER=FL /STK=1 /UG=Rn.98 /LL=24822 /DEF=Rattus norvegicus Testis enhanced gene transcript (Tegt), mRNA. /PROD=testis enhanced gene transcript /FL=gb:NM_019381.1 NM_019381 transmembrane BAX inhibitor motif containing 6 Tmbim6 24822 NM_019381 0006915 // apoptosis // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0030324 // lung development // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1369880_at NM_012982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012982.1 /DB_XREF=gi:6981225 /GEN=Msx2 /FEA=FLmRNA /CNT=2 /TID=Rn.10414.1 /TIER=FL /STK=1 /UG=Rn.10414 /LL=25483 /DEF=Rattus norvegicus Msh (Drosophila) homeo box homolog (Msx2), mRNA. /PROD=msh (Drosophila) homeo box homolog /FL=gb:NM_012982.1 NM_012982 msh homeobox 2 Msx2 25483 NM_012982 0001503 // ossification // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0001649 // osteoblast differentiation // inferred from sequence or structural similarity /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030509 // BMP signaling pathway // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // not recorded /// 0071392 // cellular response to estradiol stimulus // inferred from electronic annotation /// 0071392 // cellular response to estradiol stimulus // not recorded /// 0071445 // cellular response to protein stimulus // inferred from electronic annotation /// 0071445 // cellular response to protein stimulus // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from sequence or structural similarity /// 0010843 // promoter binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1369881_at NM_019308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019308.1 /DB_XREF=gi:9506726 /GEN=Gja6 /FEA=FLmRNA /CNT=2 /TID=Rn.44459.1 /TIER=FL /STK=1 /UG=Rn.44459 /LL=54256 /DEF=Rattus norvegicus gap junction membrane channel protein alpha 6 (Gja6), mRNA. /PROD=gap junction membrane channel protein alpha 6 /FL=gb:NM_019308.1 NM_019308 gap junction protein, alpha 6 Gja6 54256 NM_019308 0007154 // cell communication // inferred from electronic annotation /// 0016264 // gap junction assembly // traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0005921 // gap junction // traceable author statement /// 0005921 // gap junction // inferred from electronic annotation /// 0005922 // connexon complex // traceable author statement /// 0005922 // connexon complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005243 // gap junction channel activity // traceable author statement 1369882_at NM_019374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019374.1 /DB_XREF=gi:9506966 /GEN=Pdyn /FEA=FLmRNA /CNT=2 /TID=Rn.44471.1 /TIER=FL /STK=1 /UG=Rn.44471 /LL=29190 /DEF=Rattus norvegicus prodynorphin (Pdyn), mRNA. /PROD=prodynorphin /FL=gb:NM_019374.1 NM_019374 prodynorphin Pdyn 29190 NM_019374 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0046928 // regulation of neurotransmitter secretion // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0001515 // opioid peptide activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1369883_at NM_017044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017044.1 /DB_XREF=gi:8394099 /GEN=Pth /FEA=FLmRNA /CNT=2 /TID=Rn.9768.1 /TIER=FL /STK=1 /UG=Rn.9768 /LL=24694 /DEF=Rattus norvegicus Parathyroid hormone (Pth), mRNA. /PROD=parathyroid hormone /FL=gb:NM_017044.1 NM_017044 parathyroid hormone Pth 24694 NM_017044 0001503 // ossification // traceable author statement /// 0006874 // cellular calcium ion homeostasis // inferred from direct assay /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from direct assay /// 0007266 // Rho protein signal transduction // inferred from mutant phenotype /// 0009967 // positive regulation of signal transduction // inferred from electronic annotation /// 0009967 // positive regulation of signal transduction // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // not recorded /// 0034645 // cellular macromolecule biosynthetic process // not recorded /// 0045453 // bone resorption // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005179 // hormone activity // inferred from electronic annotation /// 0005179 // hormone activity // not recorded /// 0031856 // parathyroid hormone receptor binding // inferred from direct assay 1369884_at NM_022182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022182.1 /DB_XREF=gi:11559942 /GEN=Fgf7 /FEA=FLmRNA /CNT=2 /TID=Rn.44412.1 /TIER=FL /STK=1 /UG=Rn.44412 /LL=29348 /DEF=Rattus norvegicus fibroblast growth factor 7 (Fgf7), mRNA. /PROD=fibroblast growth factor 7 /FL=gb:NM_022182.1 NM_022182 fibroblast growth factor 7 Fgf7 29348 NM_022182 0001541 // ovarian follicle development // inferred from mutant phenotype /// 0006656 // phosphatidylcholine biosynthetic process // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0008654 // phospholipid biosynthetic process // inferred from mutant phenotype /// 0010463 // mesenchymal cell proliferation // inferred from electronic annotation /// 0010463 // mesenchymal cell proliferation // not recorded /// 0010838 // positive regulation of keratinocyte proliferation // inferred from electronic annotation /// 0010838 // positive regulation of keratinocyte proliferation // not recorded /// 0030324 // lung development // inferred from mutant phenotype /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // not recorded /// 0031532 // actin cytoskeleton reorganization // inferred from electronic annotation /// 0031532 // actin cytoskeleton reorganization // not recorded /// 0034394 // protein localization at cell surface // inferred from electronic annotation /// 0034394 // protein localization at cell surface // not recorded /// 0042060 // wound healing // inferred from direct assay /// 0043129 // surfactant homeostasis // inferred from mutant phenotype /// 0050679 // positive regulation of epithelial cell proliferation // inferred from direct assay /// 0050679 // positive regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050918 // positive chemotaxis // not recorded /// 0050918 // positive chemotaxis // inferred from electronic annotation /// 0051549 // positive regulation of keratinocyte migration // inferred from electronic annotation /// 0051549 // positive regulation of keratinocyte migration // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // not recorded /// 0060501 // positive regulation of epithelial cell proliferation involved in lung morphogenesis // inferred from electronic annotation /// 0060501 // positive regulation of epithelial cell proliferation involved in lung morphogenesis // not recorded /// 0060665 // regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling // inferred from electronic annotation /// 0060665 // regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling // not recorded /// 0061033 // secretion by lung epithelial cell involved in lung growth // inferred from electronic annotation /// 0061033 // secretion by lung epithelial cell involved in lung growth // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0005111 // type 2 fibroblast growth factor receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from mutant phenotype /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from direct assay /// 0042056 // chemoattractant activity // inferred from electronic annotation /// 0042056 // chemoattractant activity // not recorded 1369885_at NM_022688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022688.1 /DB_XREF=gi:12083638 /GEN=Porf1 /FEA=FLmRNA /CNT=2 /TID=Rn.48808.1 /TIER=FL /STK=1 /UG=Rn.48808 /LL=64629 /DEF=Rattus norvegicus preoptic regulatory factor-1 (Porf1), mRNA. /PROD=preoptic regulatory factor-1 /FL=gb:NM_022688.1 NM_022688 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation 1369886_a_at AJ315761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ315761.1 /DB_XREF=gi:14588893 /GEN=caldendrin /FEA=mRNA /CNT=1 /TID=Rn.23560.3 /TIER=ConsEnd /STK=0 /UG=Rn.23560 /DEF=Rattus norvegicus mRNA for Caldendrin, isoform S1 gene). /PROD=Caldendrin, isoform S1 AJ315761 calcium binding protein 1 Cabp1 171051 NM_001033675 /// NM_001033676 /// NM_133529 0007275 // multicellular organismal development // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation 1369887_at NM_013184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013184.1 /DB_XREF=gi:6981291 /GEN=Ntf5 /FEA=FLmRNA /CNT=2 /TID=Rn.44225.1 /TIER=FL /STK=1 /UG=Rn.44225 /LL=25730 /DEF=Rattus norvegicus Neurotrophin 5 (neurotrophin 45) (Ntf5), mRNA. /PROD=neurotrophin 5 (neurotrophin 45) /FL=gb:NM_013184.1 NM_013184 neurotrophin 4 Ntf4 25730 NM_013184 0007402 // ganglion mother cell fate determination // not recorded /// 0007402 // ganglion mother cell fate determination // inferred from sequence or structural similarity /// 0007402 // ganglion mother cell fate determination // inferred from electronic annotation /// 0007616 // long-term memory // not recorded /// 0007616 // long-term memory // inferred from sequence or structural similarity /// 0007616 // long-term memory // inferred from electronic annotation /// 0008052 // sensory organ boundary specification // not recorded /// 0008052 // sensory organ boundary specification // inferred from sequence or structural similarity /// 0008052 // sensory organ boundary specification // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0008344 // adult locomotory behavior // inferred from sequence or structural similarity /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008544 // epidermis development // not recorded /// 0008544 // epidermis development // inferred from sequence or structural similarity /// 0008544 // epidermis development // inferred from electronic annotation /// 0042490 // mechanoreceptor differentiation // inferred from electronic annotation /// 0042490 // mechanoreceptor differentiation // not recorded /// 0048167 // regulation of synaptic plasticity // non-traceable author statement 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // not recorded /// 0005788 // endoplasmic reticulum lumen // inferred from sequence or structural similarity 0005102 // receptor binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation 1369888_at NM_012707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012707.1 /DB_XREF=gi:6978881 /GEN=Gcg /FEA=FLmRNA /CNT=2 /TID=Rn.54383.1 /TIER=FL /STK=1 /UG=Rn.54383 /LL=24952 /DEF=Rattus norvegicus Glucagon (Gcg), mRNA. /PROD=glucagon /FL=gb:NM_012707.1 NM_012707 glucagon Gcg 24952 NM_012707 0006109 // regulation of carbohydrate metabolic process // traceable author statement /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from direct assay /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0019216 // regulation of lipid metabolic process // traceable author statement /// 0019538 // protein metabolic process // traceable author statement /// 0032099 // negative regulation of appetite // inferred from mutant phenotype /// 0050796 // regulation of insulin secretion // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay 0005179 // hormone activity // inferred from direct assay /// 0005179 // hormone activity // inferred from mutant phenotype /// 0005179 // hormone activity // traceable author statement /// 0005179 // hormone activity // inferred from electronic annotation /// 0031769 // glucagon receptor binding // inferred from direct assay 1369889_at NM_019127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019127.1 /DB_XREF=gi:9506800 /GEN=Ifnb1 /FEA=FLmRNA /CNT=2 /TID=Rn.44491.1 /TIER=FL /STK=1 /UG=Rn.44491 /LL=24481 /DEF=Rattus norvegicus Interferon, beta 1, fibroblast (Ifnb1), mRNA. /PROD=interferon, beta 1, fibroblast /FL=gb:NM_019127.1 NM_019127 interferon beta 1, fibroblast Ifnb1 24481 NM_019127 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006919 // activation of caspase activity // not recorded /// 0006952 // defense response // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0032897 // negative regulation of viral transcription // inferred from electronic annotation /// 0032897 // negative regulation of viral transcription // not recorded /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0042742 // defense response to bacterium // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005126 // cytokine receptor binding // inferred from electronic annotation 1369890_at NM_133292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133292.1 /DB_XREF=gi:19072795 /GEN=Sval1 /FEA=FLmRNA /CNT=2 /TID=Rn.67069.1 /TIER=FL /STK=1 /UG=Rn.67069 /LL=84610 /DEF=Rattus norvegicus seminal vesicle antigen-like 1 (Sval1), mRNA. /PROD=RIKEN cDNA 9130404C18 /FL=gb:NM_133292.1 NM_133292 seminal vesicle antigen-like 1 Sval1 680174 NM_133292 0005576 // extracellular region // inferred from electronic annotation 1369891_at NM_021865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021865.1 /DB_XREF=gi:11177911 /GEN=Jdp1 /FEA=FLmRNA /CNT=2 /TID=Rn.9583.1 /TIER=FL /STK=1 /UG=Rn.9583 /LL=60462 /DEF=Rattus norvegicus Jun dimerization protein 1 gene (Jdp1), mRNA. /PROD=Jun dimerization protein 1 gene /FL=gb:NM_021865.1 NM_021865 basic leucine zipper transcription factor, ATF-like 3 Batf3 60462 NM_021865 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // traceable author statement /// 0046983 // protein dimerization activity // inferred from electronic annotation 1369892_at NM_021840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021840.1 /DB_XREF=gi:11177869 /GEN=H2a /FEA=FLmRNA /CNT=2 /TID=Rn.44324.1 /TIER=FL /STK=1 /UG=Rn.44324 /LL=64646 /DEF=Rattus norvegicus histone 2a (H2a), mRNA. /PROD=histone 2a /FL=gb:NM_021840.1 NM_021840 histone cluster 1, H2ai /// histone cluster 1, H2ae-like /// similar to germinal histone H4 gene /// similar to Histone H2A type 1 Hist1h2ai /// LOC100360053 /// LOC680097 /// LOC680322 100360053 /// 502129 /// 680097 /// 680322 XM_001055696 /// XM_001056658 /// XM_001061350 /// XM_002725263 /// XM_577577 /// XR_085658 /// XR_086069 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1369893_at NM_021839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021839.1 /DB_XREF=gi:12025519 /GEN=Th2a /FEA=FLmRNA /CNT=2 /TID=Rn.8353.1 /TIER=FL /STK=1 /UG=Rn.8353 /LL=24828 /DEF=Rattus norvegicus Testis-specific histone 2a (Th2a), mRNA. /PROD=testis-specific histone 2a /FL=gb:NM_021839.1 NM_021839 histone cluster 1, H2aa Hist1h2aa 24828 NM_021839 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation 1369894_at NM_021862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021862.1 /DB_XREF=gi:11177907 /GEN=5Ht-2 /FEA=FLmRNA /CNT=2 /TID=Rn.44322.1 /TIER=FL /STK=1 /UG=Rn.44322 /LL=60459 /DEF=Rattus norvegicus serotonin 5HT-2 receptor gene (5Ht-2), mRNA. /PROD=serotonin 5HT-2 receptor gene /FL=gb:NM_021862.1 NM_021862 5-hydroxytryptamine (serotonin) receptor 2A Htr2a 29595 NM_017254 0001659 // temperature homeostasis // inferred from mutant phenotype /// 0006950 // response to stress // inferred from mutant phenotype /// 0007208 // activation of phospholipase C activity by serotonin receptor signaling pathway // inferred from direct assay /// 0007210 // serotonin receptor signaling pathway // not recorded /// 0007568 // aging // inferred from expression pattern /// 0007613 // memory // inferred from mutant phenotype /// 0008219 // cell death // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0014059 // regulation of dopamine secretion // inferred from mutant phenotype /// 0014065 // phosphoinositide 3-kinase cascade // not recorded /// 0019233 // sensory perception of pain // inferred from mutant phenotype /// 0030431 // sleep // inferred from mutant phenotype /// 0042493 // response to drug // inferred from mutant phenotype /// 0042493 // response to drug // not recorded /// 0043267 // negative regulation of potassium ion transport // inferred from mutant phenotype /// 0043406 // positive regulation of MAP kinase activity // inferred from mutant phenotype /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype /// 0046489 // phosphoinositide biosynthetic process // not recorded /// 0051209 // release of sequestered calcium ion into cytosol // not recorded /// 0051967 // negative regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype /// 0070371 // ERK1 and ERK2 cascade // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay 0004435 // phosphoinositide phospholipase C activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // not recorded /// 0008144 // drug binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction /// 0051378 // serotonin binding // inferred from electronic annotation /// 0051378 // serotonin binding // not recorded 1369895_s_at AF109393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF109393.1 /DB_XREF=gi:6492251 /FEA=FLmRNA /CNT=12 /TID=Rn.13805.1 /TIER=FL+Stack /STK=7 /UG=Rn.13805 /DEF=Rattus norvegicus podocalyxin mRNA, complete cds. /PROD=podocalyxin /FL=gb:AF109393.1 gb:AB020726.1 AF109393 podocalyxin-like Podxl 192181 NM_138848 0007155 // cell adhesion // inferred from electronic annotation /// 0007162 // negative regulation of cell adhesion // inferred from direct assay /// 0030335 // positive regulation of cell migration // not recorded /// 0030335 // positive regulation of cell migration // inferred from sequence or structural similarity /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0032534 // regulation of microvillus assembly // not recorded /// 0032534 // regulation of microvillus assembly // inferred from sequence or structural similarity /// 0032534 // regulation of microvillus assembly // inferred from electronic annotation /// 0033634 // positive regulation of cell-cell adhesion mediated by integrin // not recorded /// 0033634 // positive regulation of cell-cell adhesion mediated by integrin // inferred from sequence or structural similarity /// 0033634 // positive regulation of cell-cell adhesion mediated by integrin // inferred from electronic annotation /// 0050900 // leukocyte migration // inferred from electronic annotation /// 0050900 // leukocyte migration // not recorded /// 0072175 // epithelial tube formation // inferred from sequence or structural similarity 0001726 // ruffle // not recorded /// 0001726 // ruffle // inferred from sequence or structural similarity /// 0001726 // ruffle // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005902 // microvillus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030175 // filopodium // not recorded /// 0030175 // filopodium // inferred from sequence or structural similarity /// 0030175 // filopodium // inferred from electronic annotation /// 0031528 // microvillus membrane // not recorded /// 0031528 // microvillus membrane // inferred from sequence or structural similarity /// 0031528 // microvillus membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 1369896_s_at NM_139094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_139094.1 /DB_XREF=gi:20806132 /GEN=LOC245926 /FEA=FLmRNA /CNT=1 /TID=Affx.1.20 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus CTD-binding SR-like protein rA8 (LOC245926), mRNA. /PROD=CTD-binding SR-like protein rA8 /FL=gb:NM_139094.1 NM_139094 RNA binding motif protein 16 Rbm16 245926 NM_139094 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006397 // mRNA processing // inferred from mutant phenotype /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from direct assay /// 0016363 // nuclear matrix // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from mutant phenotype /// 0043175 // RNA polymerase core enzyme binding // inferred from electronic annotation /// 0070063 // RNA polymerase binding // inferred from physical interaction 1369897_s_at BI277035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277035 /DB_XREF=gi:14922523 /DB_XREF=UI-R-CY0-bxp-d-11-0-UI.s1 /CLONE=UI-R-CY0-bxp-d-11-0-UI /FEA=FLmRNA /CNT=75 /TID=Rn.31.1 /TIER=Stack /STK=12 /UG=Rn.31 /LL=24896 /UG_GENE=Gnas1 /UG_TITLE=Guanine nucleotide-binding protein G-s, alpha subunit /FL=gb:NM_019132.1 gb:M17525.1 BI277035 GNAS complex locus Gnas 24896 NM_001024823 /// NM_001159653 /// NM_001159656 /// NM_019132 /// NM_021845 0001501 // skeletal system development // not recorded /// 0001958 // endochondral ossification // not recorded /// 0006112 // energy reserve metabolic process // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from direct assay /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007191 // activation of adenylate cyclase activity by dopamine receptor signaling pathway // not recorded /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0009791 // post-embryonic development // not recorded /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0040032 // post-embryonic body morphogenesis // not recorded /// 0042493 // response to drug // not recorded /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045672 // positive regulation of osteoclast differentiation // not recorded /// 0048701 // embryonic cranial skeleton morphogenesis // not recorded /// 0051216 // cartilage development // not recorded 0001726 // ruffle // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // inferred from direct assay /// 0005834 // heterotrimeric G-protein complex // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031224 // intrinsic to membrane // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0032588 // trans-Golgi network membrane // not recorded /// 0042383 // sarcolemma // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0044424 // intracellular part // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031852 // mu-type opioid receptor binding // inferred from direct assay /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction /// 0042802 // identical protein binding // not recorded 1369898_a_at L08831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L08831.1 /DB_XREF=gi:204322 /GEN=GIP /FEA=FLmRNA /CNT=3 /TID=Rn.10446.2 /TIER=FL /STK=2 /UG=Rn.10446 /LL=25040 /DEF=Rat glucose-dependent insulinotropic peptide (GIP) mRNA, complete cds. /PROD=glucose-dependent insulinotropic peptide /FL=gb:L08831.1 L08831 gastric inhibitory polypeptide Gip 25040 NM_019630 0001101 // response to acid // inferred from mutant phenotype /// 0007565 // female pregnancy // inferred from expression pattern /// 0009743 // response to carbohydrate stimulus // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010269 // response to selenium ion // inferred from expression pattern /// 0010828 // positive regulation of glucose transport // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032024 // positive regulation of insulin secretion // inferred from mutant phenotype /// 0033993 // response to lipid // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042594 // response to starvation // inferred from expression pattern /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0043950 // positive regulation of cAMP-mediated signaling // inferred from mutant phenotype /// 0048678 // response to axon injury // inferred from expression pattern /// 0050796 // regulation of insulin secretion // traceable author statement /// 0050806 // positive regulation of synaptic transmission // inferred from direct assay /// 0055123 // digestive system development // inferred from expression pattern /// 0060291 // long-term synaptic potentiation // inferred from direct assay /// 0070094 // positive regulation of glucagon secretion // inferred from direct assay /// 0070328 // triglyceride homeostasis // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0005102 // receptor binding // inferred from mutant phenotype /// 0005179 // hormone activity // inferred from electronic annotation 1369899_s_at NM_013020 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013020.2 /DB_XREF=gi:19923675 /GEN=Rabggtb /FEA=FLmRNA /CNT=1 /TID=Rn.2542.1 /TIER=FL /STK=1 /UG=Rn.2542 /LL=25533 /DEF=Rattus norvegicus Rab geranylgeranyl transferase componenet, subunit beta (Rabggtb), mRNA. /PROD=rab geranylgeranyl transferase componenet,subunit beta /FL=gb:NM_013020.2 NM_013020 Rab geranylgeranyltransferase, alpha subunit Rabggta 58983 NM_031654 0018344 // protein geranylgeranylation // inferred from direct assay /// 0018344 // protein geranylgeranylation // not recorded /// 0018344 // protein geranylgeranylation // inferred from electronic annotation 0004659 // prenyltransferase activity // inferred from electronic annotation /// 0004663 // Rab geranylgeranyltransferase activity // inferred from direct assay /// 0004663 // Rab geranylgeranyltransferase activity // not recorded /// 0004663 // Rab geranylgeranyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008318 // protein prenyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369900_at NM_139194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_139194.1 /DB_XREF=gi:21070931 /GEN=Tnfrsf6 /FEA=FLmRNA /CNT=1 /TID=Affx.1.22 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus Tumor necrosis factor receptor superfamily, member 6 (Tnfrsf6), mRNA. /PROD=Tumor necrosis factor receptor superfamily,member 6 /FL=gb:NM_139194.1 NM_139194 Fas (TNF receptor superfamily, member 6) Fas 246097 NM_139194 0001666 // response to hypoxia // inferred from expression pattern /// 0002377 // immunoglobulin production // inferred from electronic annotation /// 0002377 // immunoglobulin production // not recorded /// 0003014 // renal system process // inferred from electronic annotation /// 0003014 // renal system process // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // traceable author statement /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from expression pattern /// 0006924 // activation-induced cell death of T cells // inferred from electronic annotation /// 0006924 // activation-induced cell death of T cells // not recorded /// 0006925 // inflammatory cell apoptosis // inferred from electronic annotation /// 0006925 // inflammatory cell apoptosis // not recorded /// 0006927 // transformed cell apoptosis // inferred from electronic annotation /// 0006927 // transformed cell apoptosis // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008624 // induction of apoptosis by extracellular signals // inferred from mutant phenotype /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0008624 // induction of apoptosis by extracellular signals // inferred from electronic annotation /// 0008625 // induction of apoptosis via death domain receptors // inferred from expression pattern /// 0008625 // induction of apoptosis via death domain receptors // not recorded /// 0008625 // induction of apoptosis via death domain receptors // inferred from electronic annotation /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0009636 // response to toxin // inferred from expression pattern /// 0009636 // response to toxin // not recorded /// 0009636 // response to toxin // inferred from electronic annotation /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010467 // gene expression // inferred from electronic annotation /// 0010467 // gene expression // not recorded /// 0010940 // positive regulation of necrotic cell death // not recorded /// 0019724 // B cell mediated immunity // inferred from electronic annotation /// 0019724 // B cell mediated immunity // not recorded /// 0031104 // dendrite regeneration // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042127 // regulation of cell proliferation // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0042698 // ovulation cycle // inferred from expression pattern /// 0043029 // T cell homeostasis // not recorded /// 0043029 // T cell homeostasis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045060 // negative thymic T cell selection // inferred from electronic annotation /// 0045060 // negative thymic T cell selection // not recorded /// 0045619 // regulation of lymphocyte differentiation // inferred from electronic annotation /// 0045619 // regulation of lymphocyte differentiation // not recorded /// 0045637 // regulation of myeloid cell differentiation // inferred from electronic annotation /// 0045637 // regulation of myeloid cell differentiation // not recorded /// 0048536 // spleen development // inferred from electronic annotation /// 0048536 // spleen development // not recorded /// 0050869 // negative regulation of B cell activation // inferred from electronic annotation /// 0050869 // negative regulation of B cell activation // not recorded /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded /// 0070848 // response to growth factor stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005886 // plasma membrane // not recorded /// 0005901 // caveola // inferred from expression pattern /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031264 // death-inducing signaling complex // not recorded /// 0031265 // CD95 death-inducing signaling complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004872 // receptor activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // non-traceable author statement /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005031 // tumor necrosis factor receptor activity // inferred from mutant phenotype /// 0005031 // tumor necrosis factor receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019900 // kinase binding // not recorded /// 0042802 // identical protein binding // not recorded 1369901_at NM_139254 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_139254.1 /DB_XREF=gi:21245097 /GEN=Tubb3 /FEA=FLmRNA /CNT=1 /TID=Affx.1.24 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus tubulin, beta 3 (Tubb3), mRNA. /PROD=tubulin, beta 3 /FL=gb:NM_139254.1 NM_139254 tubulin, beta 3 Tubb3 246118 NM_139254 0001764 // neuron migration // inferred from electronic annotation /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007067 // mitosis // inferred from mutant phenotype /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from sequence or structural similarity /// 0030182 // neuron differentiation // inferred from mutant phenotype /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0032720 // negative regulation of tumor necrosis factor production // inferred from electronic annotation /// 0051225 // spindle assembly // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation /// 0070914 // UV-damage excision repair // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0004980 // melanocyte-stimulating hormone receptor activity // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // non-traceable author statement /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0042277 // peptide binding // inferred from physical interaction /// 0042288 // MHC class I protein binding // inferred from electronic annotation 1369902_at NM_139258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_139258.1 /DB_XREF=gi:21245089 /GEN=Bmf /FEA=FLmRNA /CNT=1 /TID=Affx.1.25 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus Bcl-2 modifying factor (Bmf), mRNA. /PROD=Bcl-2 modifying factor /FL=gb:NM_139258.1 NM_139258 Bcl2 modifying factor Bmf 246142 NM_139258 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded 0001669 // acrosomal vesicle // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0015629 // actin cytoskeleton // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016459 // myosin complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369903_at NM_017065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017065.1 /DB_XREF=gi:8393389 /GEN=Gabrb3 /FEA=FLmRNA /CNT=1 /TID=Rn.53967.1 /TIER=FL /STK=1 /UG=Rn.53967 /LL=24922 /DEF=Rattus norvegicus Gamma-aminobutyric acid receptor beta 3 (Gabrb3), mRNA. /PROD=gamma-aminobutyric acid receptor beta 3 /FL=gb:NM_017065.1 NM_017065 gamma-aminobutyric acid (GABA) A receptor, beta 3 Gabrb3 24922 NM_017065 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0051932 // synaptic transmission, GABAergic // inferred from direct assay 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0043195 // terminal button // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004890 // GABA-A receptor activity // inferred from direct assay /// 0004890 // GABA-A receptor activity // inferred from electronic annotation /// 0004890 // GABA-A receptor activity // traceable author statement /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from direct assay /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 1369904_at NM_012956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012956.1 /DB_XREF=gi:6978866 /GEN=Gabrb1 /FEA=FLmRNA /CNT=1 /TID=Rn.48879.1 /TIER=FL /STK=1 /UG=Rn.48879 /LL=25450 /DEF=Rattus norvegicus Gamma-aminobutyric acid receptor beta 1 (Gabrb1), mRNA. /PROD=gamma-aminobutyric acid receptor beta 1 /FL=gb:NM_012956.1 NM_012956 gamma-aminobutyric acid (GABA) A receptor, beta 1 Gabrb1 25450 NM_012956 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // traceable author statement /// 0007214 // gamma-aminobutyric acid signaling pathway // traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004890 // GABA-A receptor activity // inferred from direct assay /// 0004890 // GABA-A receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0015276 // ligand-gated ion channel activity // traceable author statement 1369905_at NM_080587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080587.1 /DB_XREF=gi:18034794 /GEN=Gabra4 /FEA=FLmRNA /CNT=1 /TID=Rn.81205.1 /TIER=FL /STK=1 /UG=Rn.81205 /DEF=Rattus norvegicus gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 4 (Gabra4), mRNA. /PROD=gamma-aminobutyric acid (GABA-A) receptor,subunit alpha 4 /FL=gb:NM_080587.1 NM_080587 gamma-aminobutyric acid (GABA) A receptor, alpha 4 Gabra4 140675 NM_080587 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004890 // GABA-A receptor activity // traceable author statement /// 0004890 // GABA-A receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation 1369906_s_at BG378265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378265 /DB_XREF=gi:13302737 /DB_XREF=UI-R-CV1-bvq-a-07-0-UI.s1 /CLONE=UI-R-CV1-bvq-a-07-0-UI /FEA=EST /CNT=27 /TID=Rn.7871.1 /TIER=Stack /STK=23 /UG=Rn.7871 /UG_TITLE=ESTs, Moderately similar to JS0027 probable calcium-binding protein (H.sapiens) BG378265 multiple coagulation factor deficiency 2 Mcfd2 246117 NM_139253 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019752 // carboxylic acid metabolic process // inferred from direct assay 0005576 // extracellular region // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1369907_at NM_022665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022665.1 /DB_XREF=gi:12083592 /GEN=Alpi /FEA=FLmRNA /CNT=1 /TID=Rn.48774.1 /TIER=FL /STK=1 /UG=Rn.48774 /LL=24197 /DEF=Rattus norvegicus Alkaline phosphatase 1, intestinal, defined by SSR (Alpi), mRNA. /PROD=alkaline phosphatase 1, intestinal, defined bySSR /FL=gb:NM_022665.1 NM_022665 alkaline phosphatase, intestinal Alpi 24197 NM_022665 0006793 // phosphorus metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004035 // alkaline phosphatase activity // inferred from direct assay /// 0004035 // alkaline phosphatase activity // traceable author statement /// 0004035 // alkaline phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369908_at NM_139183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_139183.1 /DB_XREF=gi:21070951 /GEN=Crhbp /FEA=FLmRNA /CNT=1 /TID=Affx.1.29 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus corticotropin releasing hormone binding protein (Crhbp), mRNA. /PROD=corticotropin releasing hormone binding protein /FL=gb:NM_139183.1 NM_139183 corticotropin releasing hormone binding protein Crhbp 29625 NM_139183 0042445 // hormone metabolic process // inferred from expression pattern /// 0042445 // hormone metabolic process // not recorded /// 0042445 // hormone metabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay 0017047 // adrenocorticotropin-releasing hormone binding // inferred from direct assay /// 0017047 // adrenocorticotropin-releasing hormone binding // not recorded /// 0017047 // adrenocorticotropin-releasing hormone binding // inferred from electronic annotation 1369909_s_at NM_139107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_139107.1 /DB_XREF=gi:20806154 /GEN=Tm6p1 /FEA=FLmRNA /CNT=1 /TID=Affx.1.30 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus fasting-inducible integral membrane protein TM6P1 (Tm6p1), mRNA. /PROD=fasting-inducible integral membrane proteinTM6P1 /FL=gb:NM_139107.1 NM_139107 transmembrane protein 150A Tmem150a 245966 NM_139107 0009056 // catabolic process // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 1369910_at NM_139193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_139193.1 /DB_XREF=gi:21070929 /GEN=Gpr10 /FEA=FLmRNA /CNT=1 /TID=Affx.1.31 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus G-protein coupled receptor 10 (Gpr10), mRNA. /PROD=G-protein coupled receptor 10 /FL=gb:NM_139193.1 NM_139193 prolactin releasing hormone receptor Prlhr 246075 NM_139193 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007631 // feeding behavior // inferred from mutant phenotype /// 0007631 // feeding behavior // not recorded /// 0007631 // feeding behavior // inferred from electronic annotation /// 0042445 // hormone metabolic process // inferred from electronic annotation /// 0042445 // hormone metabolic process // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from mutant phenotype /// 0004930 // G-protein coupled receptor activity // not recorded /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004983 // neuropeptide Y receptor activity // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred from mutant phenotype 1369911_at NM_053303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053303.1 /DB_XREF=gi:16757999 /GEN=Blr1 /FEA=FLmRNA /CNT=1 /TID=Rn.81054.1 /TIER=FL /STK=1 /UG=Rn.81054 /LL=29363 /DEF=Rattus norvegicus Burkitt lymphoma receptor 1 (Blr1), mRNA. /PROD=Burkitt lymphoma receptor 1 /FL=gb:NM_053303.1 NM_053303 chemokine (C-X-C motif) receptor 5 Cxcr5 29363 NM_053303 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0042113 // B cell activation // inferred from electronic annotation /// 0048535 // lymph node development // inferred from electronic annotation /// 0048535 // lymph node development // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0016494 // C-X-C chemokine receptor activity // inferred from electronic annotation 1369912_at NM_019302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019302.1 /DB_XREF=gi:9506514 /GEN=Crk /FEA=FLmRNA /CNT=1 /TID=Rn.54390.1 /TIER=FL /STK=1 /UG=Rn.54390 /LL=54245 /DEF=Rattus norvegicus v-crk avian sarcoma virus CT10 oncogene homolog (Crk), mRNA. /PROD=v-crk avian sarcoma virus CT10 oncogene homolog /FL=gb:NM_019302.1 NM_019302 v-crk sarcoma virus CT10 oncogene homolog (avian) Crk 54245 NM_019302 0007165 // signal transduction // not recorded /// 0007257 // activation of JUN kinase activity // traceable author statement /// 0035020 // regulation of Rac protein signal transduction // inferred from mutant phenotype /// 0051270 // regulation of cellular component movement // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005070 // SH3/SH2 adaptor activity // inferred from electronic annotation /// 0005070 // SH3/SH2 adaptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030674 // protein binding, bridging // inferred from mutant phenotype /// 0042169 // SH2 domain binding // inferred from electronic annotation /// 0042169 // SH2 domain binding // not recorded /// 0045309 // protein phosphorylated amino acid binding // inferred from electronic annotation /// 0045309 // protein phosphorylated amino acid binding // not recorded 1369913_at NM_053548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053548.1 /DB_XREF=gi:16758313 /GEN=Opn1mw /FEA=FLmRNA /CNT=1 /TID=Rn.81056.1 /TIER=FL /STK=1 /UG=Rn.81056 /LL=89810 /DEF=Rattus norvegicus opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan), green opsin (Opn1mw), mRNA. /PROD=opsin 1 (cone pigments), medium-wave-sensitive(color blindness, deutan), green opsin /FL=gb:NM_053548.1 NM_053548 opsin 1 (cone pigments), medium-wave-sensitive Opn1mw 89810 NM_053548 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007601 // visual perception // inferred from electronic annotation /// 0007602 // phototransduction // inferred from electronic annotation /// 0018298 // protein-chromophore linkage // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0001750 // photoreceptor outer segment // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0009881 // photoreceptor activity // inferred from electronic annotation 1369914_at NM_012965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012965.1 /DB_XREF=gi:6981043 /GEN=Hrh2 /FEA=FLmRNA /CNT=1 /TID=Rn.81207.1 /TIER=FL /STK=1 /UG=Rn.81207 /DEF=Rattus norvegicus Histamine H2 receptor (Hrh2), mRNA. /PROD=histamine H2 receptor /FL=gb:NM_012965.1 NM_012965 histamine receptor H 2 Hrh2 25461 NM_012965 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004969 // histamine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1369915_at NM_139186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_139186.1 /DB_XREF=gi:21070941 /GEN=LOC246042 /FEA=FLmRNA /CNT=1 /TID=Affx.1.33 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus spermatogenesis-related protein (Srp) (LOC246042), mRNA. /PROD=spermatogenesis-related protein (Srp) /FL=gb:NM_139186.1 NM_139186 1369916_at NM_020541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020541.1 /DB_XREF=gi:10120487 /GEN=Ftc /FEA=FLmRNA /CNT=1 /TID=Rn.74054.1 /TIER=FL /STK=1 /UG=Rn.74054 /LL=57299 /DEF=Rattus norvegicus alpha 1,2-fucosyltransferase C gene (Ftc), mRNA. /PROD=alpha 1,2-fucosyltransferase C gene /FL=gb:NM_020541.1 NM_020541 secretory blood group 1 Sec1 308586 NM_001135584 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0006486 // protein glycosylation // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0008107 // galactoside 2-alpha-L-fucosyltransferase activity // inferred from electronic annotation /// 0008417 // fucosyltransferase activity // inferred from electronic annotation /// 0008417 // fucosyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1369917_at NM_139259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_139259.1 /DB_XREF=gi:21245115 /GEN=LOC246143 /FEA=FLmRNA /CNT=1 /TID=Affx.1.34 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus p75-like apoptosis-inducing death domain protein PLAIDD (LOC246143), mRNA. /PROD=p75-like apoptosis-inducing death domain proteinPLAIDD /FL=gb:NM_139259.1 NM_139259 neurotrophin receptor associated death domain Nradd 246143 NM_139259 0007165 // signal transduction // inferred from electronic annotation /// 0009790 // embryo development // inferred from expression pattern /// 0010942 // positive regulation of cell death // inferred from direct assay 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005641 // nuclear envelope lumen // inferred from electronic annotation /// 0005641 // nuclear envelope lumen // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0032589 // neuron projection membrane // inferred from direct assay /// 0044298 // cell body membrane // inferred from direct assay 0005166 // neurotrophin p75 receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation 1369918_at NM_139187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_139187.1 /DB_XREF=gi:21070943 /GEN=Klrh1 /FEA=FLmRNA /CNT=1 /TID=Affx.1.35 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus killer cell lectin-like receptor 1 (Klrh1), mRNA. /PROD=killer cell lectin-like receptor 1 /FL=gb:NM_139187.1 NM_139187 killer cell lectin-like receptor subfamily H, member 1 Klrh1 246043 NM_139187 0016020 // membrane // inferred from direct assay 0003823 // antigen binding // inferred from direct assay /// 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1369919_at NM_019194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019194.1 /DB_XREF=gi:9507180 /GEN=Tef /FEA=FLmRNA /CNT=1 /TID=Rn.81206.1 /TIER=FL /STK=1 /UG=Rn.81206 /DEF=Rattus norvegicus thyrotroph embryonic factor (Tef), mRNA. /PROD=thyrotroph embryonic factor /FL=gb:NM_019194.1 NM_019194 thyrotrophic embryonic factor Tef 29362 NM_019194 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048511 // rhythmic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from expression pattern 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1369920_at NM_012579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012579.1 /DB_XREF=gi:6981005 /GEN=H1f3 /FEA=FLmRNA /CNT=1 /TID=Rn.10944.1 /TIER=FL /STK=1 /UG=Rn.10944 /LL=24438 /DEF=Rattus norvegicus histone 1, family 3 (H1f3), mRNA. /PROD=histone 1, family 3 /FL=gb:NM_012579.1 NM_012579 histone cluster 1, H1t Hist1h1t 24438 NM_012579 0006334 // nucleosome assembly // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0007283 // spermatogenesis // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation /// 0007339 // binding of sperm to zona pellucida // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030317 // sperm motility // inferred from electronic annotation /// 0030317 // sperm motility // not recorded 0000786 // nucleosome // inferred from electronic annotation /// 0000794 // condensed nuclear chromosome // inferred from electronic annotation /// 0000794 // condensed nuclear chromosome // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded 1369921_at NM_020540 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020540.1 /DB_XREF=gi:10120485 /GEN=GstYb4 /FEA=FLmRNA /CNT=1 /TID=Rn.48683.1 /TIER=FL /STK=1 /UG=Rn.48683 /LL=57298 /DEF=Rattus norvegicus glutathione S-transferase Yb4 gene (GstYb4), mRNA. /PROD=glutathione S-transferase Yb4 gene /FL=gb:NM_020540.1 NM_020540 glutathione S-transferase mu 3 Gstm3 57298 NM_020540 0008152 // metabolic process // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // not recorded 0004364 // glutathione transferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1369922_at NM_139255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_139255.1 /DB_XREF=gi:21245091 /GEN=LOC246120 /FEA=FLmRNA /CNT=1 /TID=Affx.1.36 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus RDCR-0918-3 protein (LOC246120), mRNA. /PROD=RDCR-0918-3 protein /FL=gb:NM_139255.1 NM_139255 phospholipase B domain containing 2 Plbd2 246120 NM_139255 0016042 // lipid catabolic process // inferred from electronic annotation 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0043202 // lysosomal lumen // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation 1369923_at NM_023951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023951.1 /DB_XREF=gi:13027393 /GEN=Og9x /FEA=FLmRNA /CNT=1 /TID=Rn.64503.1 /TIER=FL /STK=1 /UG=Rn.64503 /LL=58922 /DEF=Rattus norvegicus OG9 homeobox gene (Og9x), mRNA. /PROD=OG9 homeobox gene /FL=gb:NM_023951.1 NM_023951 SEBOX homeobox Sebox 58922 NM_023951 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1369924_at NM_080777 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080777.1 /DB_XREF=gi:18373325 /GEN=Sncb /FEA=FLmRNA /CNT=1 /TID=Rn.20352.1 /TIER=FL /STK=1 /UG=Rn.20352 /DEF=Rattus norvegicus synuclein, beta (Sncb), mRNA. /PROD=synuclein, beta /FL=gb:NM_080777.1 NM_080777 synuclein, beta Sncb 113893 NM_080777 0042417 // dopamine metabolic process // inferred from electronic annotation /// 0042417 // dopamine metabolic process // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0019717 // synaptosome // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0043195 // terminal button // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay 0005509 // calcium ion binding // not recorded 1369925_at NM_139085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_139085.1 /DB_XREF=gi:20806118 /GEN=Cst11 /FEA=FLmRNA /CNT=1 /TID=Affx.1.37 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus cystatin 11 (Cst11), mRNA. /PROD=cystatin 11 /FL=gb:NM_139085.1 NM_139085 cystatin 11 Cst11 245916 NM_139085 0005576 // extracellular region // inferred from electronic annotation 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1369926_at NM_022525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022525.1 /DB_XREF=gi:11968107 /GEN=Gpxp /FEA=FLmRNA /CNT=83 /TID=Rn.1491.1 /TIER=FL+Stack /STK=75 /UG=Rn.1491 /LL=64317 /DEF=Rattus norvegicus plasma glutathione peroxidase precursor (Gpxp), mRNA. /PROD=plasma glutathione peroxidase precursor /FL=gb:NM_022525.1 gb:D00680.1 NM_022525 glutathione peroxidase 3 Gpx3 64317 NM_022525 0002238 // response to molecule of fungal origin // inferred from expression pattern /// 0006749 // glutathione metabolic process // inferred from direct assay /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0010269 // response to selenium ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042744 // hydrogen peroxide catabolic process // inferred from direct assay /// 0042744 // hydrogen peroxide catabolic process // not recorded /// 0042744 // hydrogen peroxide catabolic process // inferred from electronic annotation /// 0051289 // protein homotetramerization // not recorded /// 0051289 // protein homotetramerization // inferred from sequence or structural similarity /// 0051289 // protein homotetramerization // inferred from electronic annotation /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay 0004601 // peroxidase activity // inferred from electronic annotation /// 0004602 // glutathione peroxidase activity // inferred from direct assay /// 0004602 // glutathione peroxidase activity // not recorded /// 0004602 // glutathione peroxidase activity // inferred from sequence or structural similarity /// 0004602 // glutathione peroxidase activity // inferred from electronic annotation /// 0008430 // selenium binding // inferred from direct assay /// 0008430 // selenium binding // inferred from mutant phenotype /// 0008430 // selenium binding // not recorded /// 0008430 // selenium binding // inferred from sequence or structural similarity /// 0008430 // selenium binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0043295 // glutathione binding // inferred from direct assay 1369927_at NM_031151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031151.1 /DB_XREF=gi:13592144 /GEN=Mor1 /FEA=FLmRNA /CNT=73 /TID=Rn.1011.1 /TIER=FL+Stack /STK=54 /UG=Rn.1011 /LL=81829 /DEF=Rattus norvegicus malate dehydrogenase mitochondrial (Mor1), mRNA. /PROD=malate dehydrogenase mitochondrial /FL=gb:NM_031151.1 NM_031151 malate dehydrogenase 2, NAD (mitochondrial) Mdh2 81829 NM_031151 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006096 // glycolysis // inferred from electronic annotation /// 0006099 // tricarboxylic acid cycle // inferred from direct assay /// 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006107 // oxaloacetate metabolic process // inferred from direct assay /// 0006108 // malate metabolic process // inferred from direct assay /// 0006108 // malate metabolic process // not recorded /// 0006108 // malate metabolic process // inferred from electronic annotation /// 0006734 // NADH metabolic process // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0044262 // cellular carbohydrate metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016615 // malate dehydrogenase activity // inferred from direct assay /// 0016615 // malate dehydrogenase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0030060 // L-malate dehydrogenase activity // inferred from direct assay /// 0030060 // L-malate dehydrogenase activity // not recorded /// 0030060 // L-malate dehydrogenase activity // inferred from electronic annotation /// 0043621 // protein self-association // inferred from direct assay /// 0046554 // malate dehydrogenase (NADP+) activity // inferred from direct assay 1369928_at NM_019212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019212.1 /DB_XREF=gi:9506370 /GEN=Acta1 /FEA=FLmRNA /CNT=54 /TID=Rn.39438.1 /TIER=FL+Stack /STK=46 /UG=Rn.39438 /LL=29437 /DEF=Rattus norvegicus actin, alpha 1, skeletal muscle (Acta1), mRNA. /PROD=actin, alpha 1, skeletal muscle /FL=gb:NM_019212.1 NM_019212 actin, alpha 1, skeletal muscle Acta1 29437 NM_019212 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009991 // response to extracellular stimulus // inferred from expression pattern /// 0010226 // response to lithium ion // inferred from expression pattern /// 0016049 // cell growth // inferred from expression pattern /// 0030240 // skeletal muscle thin filament assembly // not recorded /// 0030240 // skeletal muscle thin filament assembly // inferred from sequence or structural similarity /// 0030240 // skeletal muscle thin filament assembly // inferred from electronic annotation /// 0043503 // skeletal muscle fiber adaptation // inferred from expression pattern /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0048741 // skeletal muscle fiber development // not recorded /// 0048741 // skeletal muscle fiber development // inferred from sequence or structural similarity /// 0048741 // skeletal muscle fiber development // inferred from electronic annotation 0001725 // stress fiber // not recorded /// 0001725 // stress fiber // inferred from sequence or structural similarity /// 0001725 // stress fiber // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005865 // striated muscle thin filament // not recorded /// 0005865 // striated muscle thin filament // inferred from sequence or structural similarity /// 0005865 // striated muscle thin filament // inferred from electronic annotation /// 0005884 // actin filament // not recorded /// 0005884 // actin filament // inferred from sequence or structural similarity /// 0005884 // actin filament // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0030017 // sarcomere // not recorded /// 0030017 // sarcomere // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1369929_at NM_013013 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013013.1 /DB_XREF=gi:6981423 /GEN=Psap /FEA=FLmRNA /CNT=62 /TID=Rn.2130.1 /TIER=FL+Stack /STK=45 /UG=Rn.2130 /LL=25524 /DEF=Rattus norvegicus Prosaposin (sulfated glycoprotein, sphingolipid hydrolase activator) (Psap), mRNA. /PROD=prosaposin (sulfated glycoprotein, sphingolipidhydrolase activator) /FL=gb:NM_013013.1 gb:M19936.1 NM_013013 prosaposin Psap 25524 NM_001190236 /// NM_001190237 /// NM_001190238 /// NM_013013 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // inferred from electronic annotation /// 0043408 // regulation of MAPKKK cascade // inferred from electronic annotation /// 0043408 // regulation of MAPKKK cascade // not recorded /// 0046836 // glycolipid transport // non-traceable author statement /// 0048589 // developmental growth // not recorded /// 0048589 // developmental growth // inferred from electronic annotation /// 0060736 // prostate gland growth // inferred from electronic annotation /// 0060736 // prostate gland growth // not recorded /// 0060742 // epithelial cell differentiation involved in prostate gland development // inferred from electronic annotation /// 0060742 // epithelial cell differentiation involved in prostate gland development // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0043202 // lysosomal lumen // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 1369930_at NM_017283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017283.1 /DB_XREF=gi:8394075 /GEN=Psma6 /FEA=FLmRNA /CNT=60 /TID=Rn.2935.1 /TIER=FL+Stack /STK=40 /UG=Rn.2935 /LL=29673 /DEF=Rattus norvegicus proteasome (prosome, macropain) subunit, alpha type 6 (Psma6), mRNA. /PROD=proteasome (prosome, macropain) subunit, alphatype 6 /FL=gb:NM_017283.1 NM_017283 proteasome (prosome, macropain) subunit, alpha type 6 Psma6 29673 NM_017283 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005839 // proteasome core complex // inferred from electronic annotation /// 0019773 // proteasome core complex, alpha-subunit complex // inferred from electronic annotation 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1369931_at NM_053297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053297.1 /DB_XREF=gi:16757993 /GEN=Pkm2 /FEA=FLmRNA /CNT=66 /TID=Rn.1556.1 /TIER=FL+Stack /STK=38 /UG=Rn.1556 /LL=25630 /DEF=Rattus norvegicus Pyruvate kinase 3 (Pkm2), mRNA. /PROD=pyruvate kinase 3 /FL=gb:NM_053297.1 NM_053297 pyruvate kinase, muscle Pkm2 25630 NM_053297 0001666 // response to hypoxia // inferred from expression pattern /// 0001889 // liver development // inferred from direct assay /// 0006006 // glucose metabolic process // inferred from direct assay /// 0006096 // glycolysis // inferred from direct assay /// 0006096 // glycolysis // not recorded /// 0006096 // glycolysis // inferred from electronic annotation /// 0006754 // ATP biosynthetic process // inferred from direct assay /// 0007584 // response to nutrient // inferred from expression pattern /// 0009629 // response to gravity // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0012501 // programmed cell death // not recorded /// 0014870 // response to muscle inactivity // inferred from expression pattern /// 0016310 // phosphorylation // not recorded /// 0031100 // organ regeneration // inferred from direct assay /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0042866 // pyruvate biosynthetic process // inferred from direct assay /// 0043403 // skeletal muscle tissue regeneration // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0019861 // flagellum // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004743 // pyruvate kinase activity // inferred from direct assay /// 0004743 // pyruvate kinase activity // not recorded /// 0004743 // pyruvate kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030955 // potassium ion binding // inferred from electronic annotation /// 0043531 // ADP binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1369932_a_at NM_012639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012639.1 /DB_XREF=gi:6981457 /GEN=Raf1 /FEA=FLmRNA /CNT=42 /TID=Rn.5936.1 /TIER=FL+Stack /STK=33 /UG=Rn.5936 /LL=24703 /DEF=Rattus norvegicus Murine leukemia viral (v-raf-1) oncogene homolog 1 (3611-MSV) (Raf1), mRNA. /PROD=murine leukemia viral (v-raf-1) oncogene homolog1 (3611-MSV) /FL=gb:M15427.1 gb:NM_012639.1 NM_012639 v-raf-leukemia viral oncogene 1 Raf1 24703 NM_012639 0000165 // MAPKKK cascade // inferred from direct assay /// 0000165 // MAPKKK cascade // inferred from mutant phenotype /// 0001666 // response to hypoxia // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0006468 // protein phosphorylation // traceable author statement /// 0006915 // apoptosis // not recorded /// 0007010 // cytoskeleton organization // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // traceable author statement /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0007507 // heart development // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0048011 // nerve growth factor receptor signaling pathway // not recorded 0005626 // insoluble fraction // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004709 // MAP kinase kinase kinase activity // inferred from direct assay /// 0004709 // MAP kinase kinase kinase activity // inferred from mutant phenotype /// 0004709 // MAP kinase kinase kinase activity // traceable author statement /// 0005057 // receptor signaling protein activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0031434 // mitogen-activated protein kinase kinase binding // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1369933_at AF268468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF268468.1 /DB_XREF=gi:8810246 /GEN=VDAC2 /FEA=FLmRNA /CNT=58 /TID=Rn.3343.1 /TIER=FL+Stack /STK=32 /UG=Rn.3343 /LL=83531 /DEF=Rattus norvegicus voltage-dependent anion channel 2 (VDAC2) mRNA, complete cds. /PROD=voltage-dependent anion channel 2 /FL=gb:AB039663.1 gb:AF268468.1 gb:NM_031354.1 AF268468 voltage-dependent anion channel 2 Vdac2 83531 NM_031354 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006820 // anion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded /// 0046930 // pore complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008308 // voltage-gated anion channel activity // inferred from electronic annotation /// 0015288 // porin activity // inferred from electronic annotation 1369934_at NM_022536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022536.1 /DB_XREF=gi:11968125 /GEN=Ppib /FEA=FLmRNA /CNT=44 /TID=Rn.1893.1 /TIER=FL+Stack /STK=30 /UG=Rn.1893 /LL=64367 /DEF=Rattus norvegicus cyclophilin B (Ppib), mRNA. /PROD=cyclophilin B /FL=gb:AF071225.1 gb:NM_022536.1 NM_022536 peptidylprolyl isomerase B Ppib 64367 NM_022536 0006457 // protein folding // inferred from electronic annotation /// 0051169 // nuclear transport // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from electronic annotation 1369935_at NM_012766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012766.1 /DB_XREF=gi:6978618 /GEN=Ccnd3 /FEA=FLmRNA /CNT=35 /TID=Rn.3483.1 /TIER=FL+Stack /STK=30 /UG=Rn.3483 /LL=25193 /DEF=Rattus norvegicus Cyclin D3 (Ccnd3), mRNA. /PROD=cyclin D3 /FL=gb:NM_012766.1 NM_012766 cyclin D3 Ccnd3 25193 NM_012766 0000082 // G1/S transition of mitotic cell cycle // inferred from expression pattern /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0016310 // phosphorylation // not recorded /// 0030213 // hyaluronan biosynthetic process // inferred from mutant phenotype /// 0042098 // T cell proliferation // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from mutant phenotype /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // not recorded /// 0051301 // cell division // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded /// 0051726 // regulation of cell cycle // traceable author statement 0000307 // cyclin-dependent protein kinase holoenzyme complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004693 // cyclin-dependent protein kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019901 // protein kinase binding // not recorded 1369936_at X13933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X13933.1 /DB_XREF=gi:57040 /GEN=CaMI /FEA=FLmRNA /CNT=138 /TID=Rn.4166.1 /TIER=Stack /STK=34 /UG=Rn.4166 /LL=24242 /DEF=R.norvegicus mRNA for calmodulin (pRCM1). /PROD=calmodulin /FL=gb:NM_031969.1 gb:AF178845.1 X13933 calmodulin 1 Calm1 24242 NM_031969 0006936 // muscle contraction // not recorded /// 0007049 // cell cycle // not recorded /// 0032465 // regulation of cytokinesis // inferred from electronic annotation /// 0032465 // regulation of cytokinesis // not recorded /// 0043388 // positive regulation of DNA binding // not recorded /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded 0000922 // spindle pole // inferred from electronic annotation /// 0000922 // spindle pole // not recorded /// 0005576 // extracellular region // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded 0005246 // calcium channel regulator activity // non-traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0031432 // titin binding // inferred from electronic annotation /// 0031432 // titin binding // not recorded /// 0031996 // thioesterase binding // not recorded /// 0031997 // N-terminal myristoylation domain binding // inferred from electronic annotation /// 0031997 // N-terminal myristoylation domain binding // not recorded /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction /// 0048306 // calcium-dependent protein binding // inferred from physical interaction 1369937_at BI279113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279113 /DB_XREF=gi:14926614 /DB_XREF=UI-R-DA0-byj-d-07-0-UI.s1 /CLONE=UI-R-DA0-byj-d-07-0-UI /FEA=FLmRNA /CNT=138 /TID=Rn.4166.1 /TIER=Stack /STK=30 /UG=Rn.4166 /LL=24242 /UG_GENE=Calm1 /UG_TITLE=Calmodulin 1 (phosphorylase kinase, delta) /FL=gb:NM_031969.1 gb:AF178845.1 BI279113 calmodulin 1 Calm1 24242 NM_031969 0006936 // muscle contraction // not recorded /// 0007049 // cell cycle // not recorded /// 0032465 // regulation of cytokinesis // inferred from electronic annotation /// 0032465 // regulation of cytokinesis // not recorded /// 0043388 // positive regulation of DNA binding // not recorded /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded 0000922 // spindle pole // inferred from electronic annotation /// 0000922 // spindle pole // not recorded /// 0005576 // extracellular region // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded 0005246 // calcium channel regulator activity // non-traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0031432 // titin binding // inferred from electronic annotation /// 0031432 // titin binding // not recorded /// 0031996 // thioesterase binding // not recorded /// 0031997 // N-terminal myristoylation domain binding // inferred from electronic annotation /// 0031997 // N-terminal myristoylation domain binding // not recorded /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction /// 0048306 // calcium-dependent protein binding // inferred from physical interaction 1369938_at NM_133531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133531.1 /DB_XREF=gi:19424183 /GEN=Fang1 /FEA=FLmRNA /CNT=32 /TID=Rn.17321.1 /TIER=FL+Stack /STK=26 /UG=Rn.17321 /DEF=Rattus norvegicus hypothetical protein Fang1 (Fang1), mRNA. /PROD=hypothetical protein Fang1 /FL=gb:AF399873.1 gb:NM_133531.1 NM_133531 pantothenate kinase 4 Pank4 171053 NM_133531 0015937 // coenzyme A biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004594 // pantothenate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1369939_at AI104240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104240 /DB_XREF=gi:3708632 /DB_XREF=EST213529 /CLONE=RHEBZ22 /FEA=FLmRNA /CNT=112 /TID=Rn.2202.1 /TIER=Stack /STK=15 /UG=Rn.2202 /LL=25309 /UG_GENE=Cycs /UG_TITLE=Cytochrome C, expressed in somatic tissues /FL=gb:NM_012839.1 AI104240 cytochrome c, somatic Cycs 25309 NM_012839 0006123 // mitochondrial electron transport, cytochrome c to oxygen // inferred from direct assay /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // inferred from mutant phenotype /// 0006915 // apoptosis // not recorded /// 0006979 // response to oxidative stress // inferred from direct assay /// 0008635 // activation of caspase activity by cytochrome c // not recorded /// 0008635 // activation of caspase activity by cytochrome c // traceable author statement /// 0022900 // electron transport chain // inferred from electronic annotation /// 0034349 // glial cell apoptosis // inferred from expression pattern /// 0042743 // hydrogen peroxide metabolic process // not recorded /// 0043065 // positive regulation of apoptosis // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005746 // mitochondrial respiratory chain // inferred by curator /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0070469 // respiratory chain // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008289 // lipid binding // traceable author statement /// 0009055 // electron carrier activity // inferred from direct assay /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0020037 // heme binding // not recorded /// 0045155 // electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1369940_at NM_031811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031811.1 /DB_XREF=gi:13929151 /GEN=Taldo1 /FEA=FLmRNA /CNT=32 /TID=Rn.3136.1 /TIER=FL+Stack /STK=25 /UG=Rn.3136 /LL=83688 /DEF=Rattus norvegicus transaldolase 1 (Taldo1), mRNA. /PROD=transaldolase 1 /FL=gb:NM_031811.1 gb:AF069306.1 NM_031811 transaldolase 1 Taldo1 83688 NM_031811 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006002 // fructose 6-phosphate metabolic process // inferred from direct assay /// 0006098 // pentose-phosphate shunt // inferred from direct assay /// 0006098 // pentose-phosphate shunt // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009052 // pentose-phosphate shunt, non-oxidative branch // inferred from direct assay /// 0019682 // glyceraldehyde-3-phosphate metabolic process // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004801 // transaldolase activity // inferred from direct assay /// 0004801 // transaldolase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0048029 // monosaccharide binding // inferred from direct assay 1369941_at NM_022526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022526.1 /DB_XREF=gi:11968109 /GEN=Rap7a /FEA=FLmRNA /CNT=32 /TID=Rn.1531.1 /TIER=FL+Stack /STK=24 /UG=Rn.1531 /LL=64322 /DEF=Rattus norvegicus rap7a (Rap7a), mRNA. /PROD=rap7a /FL=gb:U05334.1 gb:NM_022526.1 NM_022526 death-associated protein Dap 64322 NM_022526 0006915 // apoptosis // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0010507 // negative regulation of autophagy // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0034198 // cellular response to amino acid starvation // not recorded 0016564 // transcription repressor activity // not recorded /// 0070513 // death domain binding // not recorded 1369942_at NM_031675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031675.1 /DB_XREF=gi:13928935 /GEN=Actn4 /FEA=FLmRNA /CNT=56 /TID=Rn.15777.1 /TIER=FL+Stack /STK=23 /UG=Rn.15777 /LL=63836 /DEF=Rattus norvegicus Actinin, alpha 4 (Actn4), mRNA. /PROD=alpha actinin 4 /FL=gb:AF190909.1 gb:NM_031675.1 gb:U19893.1 NM_031675 actinin alpha 4 Actn4 63836 NM_031675 0001666 // response to hypoxia // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0042981 // regulation of apoptosis // inferred from mutant phenotype /// 0048549 // positive regulation of pinocytosis // inferred from electronic annotation /// 0048549 // positive regulation of pinocytosis // not recorded /// 0051017 // actin filament bundle assembly // inferred from electronic annotation /// 0051017 // actin filament bundle assembly // not recorded /// 0051271 // negative regulation of cellular component movement // inferred from electronic annotation /// 0051271 // negative regulation of cellular component movement // not recorded /// 0051272 // positive regulation of cellular component movement // inferred from electronic annotation /// 0051272 // positive regulation of cellular component movement // not recorded 0001725 // stress fiber // inferred from direct assay /// 0001725 // stress fiber // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // not recorded /// 0031143 // pseudopodium // inferred from electronic annotation /// 0031143 // pseudopodium // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0001882 // nucleoside binding // inferred from electronic annotation /// 0001882 // nucleoside binding // not recorded /// 0003779 // actin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0051015 // actin filament binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1369943_at NM_019386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019386.1 /DB_XREF=gi:9507184 /GEN=Tgm2 /FEA=FLmRNA /CNT=41 /TID=Rn.10.1 /TIER=FL+Stack /STK=23 /UG=Rn.10 /LL=56083 /DEF=Rattus norvegicus tissue-type transglutaminase (Tgm2), mRNA. /PROD=tissue-type transglutaminase /FL=gb:NM_019386.1 gb:AF106325.1 NM_019386 transglutaminase 2, C polypeptide Tgm2 56083 NM_019386 0001974 // blood vessel remodeling // inferred from mutant phenotype /// 0006917 // induction of apoptosis // inferred from direct assay /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0018149 // peptide cross-linking // inferred from electronic annotation /// 0018153 // isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from mutant phenotype /// 0043277 // apoptotic cell clearance // not recorded /// 0043277 // apoptotic cell clearance // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // not recorded /// 0045785 // positive regulation of cell adhesion // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from direct assay /// 0050729 // positive regulation of inflammatory response // inferred from mutant phenotype /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // inferred from mutant phenotype /// 0060445 // branching involved in salivary gland morphogenesis // not recorded /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060662 // salivary gland cavitation // not recorded /// 0060662 // salivary gland cavitation // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0003810 // protein-glutamine gamma-glutamyltransferase activity // inferred from direct assay /// 0003810 // protein-glutamine gamma-glutamyltransferase activity // not recorded /// 0003810 // protein-glutamine gamma-glutamyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0019899 // enzyme binding // inferred by curator /// 0019904 // protein domain specific binding // inferred from physical interaction 1369944_at NM_030862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030862.1 /DB_XREF=gi:13540686 /GEN=Mlp /FEA=FLmRNA /CNT=29 /TID=Rn.2486.1 /TIER=FL+Stack /STK=22 /UG=Rn.2486 /LL=81520 /DEF=Rattus norvegicus MARCKS-like protein (Mlp), mRNA. /PROD=MARCKS-like protein /FL=gb:NM_030862.1 NM_030862 MARCKS-like 1 Marcksl1 81520 NM_030862 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0016192 // vesicle-mediated transport // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0005516 // calmodulin binding // inferred from electronic annotation 1369945_at NM_024378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024378.1 /DB_XREF=gi:13259379 /GEN=Grid1 /FEA=FLmRNA /CNT=30 /TID=Rn.10040.1 /TIER=FL+Stack /STK=21 /UG=Rn.10040 /LL=79219 /DEF=Rattus norvegicus glutamate receptor delta-1 subunit (Grid1), mRNA. /PROD=glutamate receptor delta-1 subunit /FL=gb:NM_024378.1 gb:U08255.1 NM_024378 glutamate receptor, ionotropic, delta 1 Grid1 79219 NM_024378 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030288 // outer membrane-bounded periplasmic space // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369946_at NM_024384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024384.1 /DB_XREF=gi:13242288 /GEN=PDRP /FEA=FLmRNA /CNT=25 /TID=Rn.19138.1 /TIER=FL+Stack /STK=21 /UG=Rn.19138 /LL=79227 /DEF=Rattus norvegicus PDRP protein (PDRP), mRNA. /PROD=PDRP protein /FL=gb:NM_024384.1 gb:AF275266.1 NM_024384 THO complex 6 homolog (Drosophila) Thoc6 79227 NM_024384 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // not recorded /// 0006406 // mRNA export from nucleus // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0046784 // intronless viral mRNA export from host nucleus // inferred from electronic annotation /// 0046784 // intronless viral mRNA export from host nucleus // not recorded /// 0051028 // mRNA transport // inferred from electronic annotation 0000346 // transcription export complex // not recorded /// 0000346 // transcription export complex // inferred from electronic annotation /// 0000347 // THO complex // not recorded /// 0000347 // THO complex // inferred from electronic annotation /// 0000445 // THO complex part of transcription export complex // inferred from electronic annotation /// 0000445 // THO complex part of transcription export complex // not recorded 0003723 // RNA binding // inferred from electronic annotation 1369947_at NM_031560 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031560.1 /DB_XREF=gi:13928757 /GEN=Ctsk /FEA=FLmRNA /CNT=28 /TID=Rn.5598.1 /TIER=FL+Stack /STK=21 /UG=Rn.5598 /LL=29175 /DEF=Rattus norvegicus cathepsin K (Ctsk), mRNA. /PROD=cathepsin K /FL=gb:NM_031560.1 gb:AF010306.1 NM_031560 cathepsin K Ctsk 29175 NM_031560 0001957 // intramembranous ossification // inferred from expression pattern /// 0006508 // proteolysis // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0045453 // bone resorption // inferred from mutant phenotype 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // traceable author statement /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1369948_at NM_053401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053401.1 /DB_XREF=gi:16758127 /GEN=Bex3 /FEA=FLmRNA /CNT=31 /TID=Rn.3126.1 /TIER=FL+Stack /STK=20 /UG=Rn.3126 /LL=84425 /DEF=Rattus norvegicus brain expressed X-linked 3 (Bex3), mRNA. /PROD=p75NTR-associated cell death executor /FL=gb:NM_053401.1 gb:AF187065.1 NM_053401 nerve growth factor receptor (TNFRSF16) associated protein 1 Ngfrap1 117089 NM_053401 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0008625 // induction of apoptosis via death domain receptors // inferred from electronic annotation /// 0008625 // induction of apoptosis via death domain receptors // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005123 // death receptor binding // inferred from electronic annotation /// 0005123 // death receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043028 // caspase regulator activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1369949_at NM_031752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031752.1 /DB_XREF=gi:13929055 /GEN=Lu /FEA=FLmRNA /CNT=24 /TID=Rn.7003.1 /TIER=FL+Stack /STK=20 /UG=Rn.7003 /LL=78958 /DEF=Rattus norvegicus Lutheran blood group (Auberger b antigen included) (Lu), mRNA. /PROD=Lutheran blood group (Auberger b antigenincluded) /FL=gb:AB035510.1 gb:NM_031752.1 NM_031752 basal cell adhesion molecule Bcam 78958 NM_031752 0007155 // cell adhesion // not recorded /// 0007155 // cell adhesion // non-traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0007165 // signal transduction // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005055 // laminin receptor activity // inferred from electronic annotation /// 0005055 // laminin receptor activity // not recorded /// 0043236 // laminin binding // inferred from electronic annotation /// 0043236 // laminin binding // not recorded 1369950_at NM_053593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053593.1 /DB_XREF=gi:16758943 /GEN=Cdk4 /FEA=FLmRNA /CNT=42 /TID=Rn.6115.1 /TIER=FL+Stack /STK=19 /UG=Rn.6115 /LL=94201 /DEF=Rattus norvegicus cyclin-dependent kinase 4 (Cdk4), mRNA. /PROD=cyclin-dependent kinase 4 /FL=gb:NM_053593.1 gb:L11007.1 NM_053593 cyclin-dependent kinase 4 Cdk4 94201 NM_053593 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007623 // circadian rhythm // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0009636 // response to toxin // inferred from expression pattern /// 0010033 // response to organic substance // inferred from mutant phenotype /// 0010288 // response to lead ion // inferred from mutant phenotype /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0033574 // response to testosterone stimulus // inferred from direct assay /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0045727 // positive regulation of translation // inferred from mutant phenotype /// 0045787 // positive regulation of cell cycle // traceable author statement /// 0045793 // positive regulation of cell size // inferred from mutant phenotype /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0051301 // cell division // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded /// 0051726 // regulation of cell cycle // traceable author statement /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0055093 // response to hyperoxia // inferred from expression pattern 0000307 // cyclin-dependent protein kinase holoenzyme complex // inferred from electronic annotation /// 0000307 // cyclin-dependent protein kinase holoenzyme complex // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // inferred from direct assay /// 0004693 // cyclin-dependent protein kinase activity // not recorded /// 0004693 // cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1369951_at NM_012536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012536.1 /DB_XREF=gi:6978716 /GEN=Ctrb1 /FEA=FLmRNA /CNT=23 /TID=Rn.3729.1 /TIER=FL+Stack /STK=19 /UG=Rn.3729 /LL=24291 /DEF=Rattus norvegicus Chymotrypsin B (Ctrb1), mRNA. /PROD=chymotrypsin B /FL=gb:NM_012536.1 NM_012536 chymotrypsinogen B1 Ctrb1 24291 NM_012536 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0007586 // digestion // inferred from electronic annotation /// 0009636 // response to toxin // inferred from expression pattern /// 0030163 // protein catabolic process // inferred from direct assay /// 0032094 // response to food // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from direct assay /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from direct assay /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1369952_at NM_134353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134353.1 /DB_XREF=gi:19705458 /GEN=Pabpc1 /FEA=FLmRNA /CNT=69 /TID=Rn.4331.1 /TIER=FL+Stack /STK=17 /UG=Rn.4331 /LL=171350 /DEF=Rattus norvegicus poly(A) binding protein, cytoplasmic 1 (Pabpc1), mRNA. /PROD=poly(A) binding protein, cytoplasmic 1 /FL=gb:NM_134353.1 NM_134353 poly(A) binding protein, cytoplasmic 1 Pabpc1 171350 NM_134353 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0008143 // poly(A) RNA binding // not recorded /// 0008143 // poly(A) RNA binding // inferred from sequence or structural similarity 1369953_a_at BI285141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285141 /DB_XREF=gi:14938482 /DB_XREF=UI-R-DB0-byw-f-05-0-UI.s1 /CLONE=UI-R-DB0-byw-f-05-0-UI /FEA=mRNA /CNT=71 /TID=Rn.6007.2 /TIER=Stack /STK=24 /UG=Rn.6007 /LL=25145 /UG_GENE=Cd24 /UG_TITLE=CD24 antigen BI285141 CD24 molecule Cd24 25145 NM_012752 0001666 // response to hypoxia // inferred from sequence or structural similarity /// 0001775 // cell activation // inferred from sequence or structural similarity /// 0001959 // regulation of cytokine-mediated signaling pathway // not recorded /// 0001959 // regulation of cytokine-mediated signaling pathway // inferred from sequence or structural similarity /// 0001959 // regulation of cytokine-mediated signaling pathway // inferred from electronic annotation /// 0002237 // response to molecule of bacterial origin // not recorded /// 0002237 // response to molecule of bacterial origin // inferred from sequence or structural similarity /// 0002237 // response to molecule of bacterial origin // inferred from electronic annotation /// 0002329 // pre-B cell differentiation // inferred from electronic annotation /// 0002329 // pre-B cell differentiation // not recorded /// 0002523 // leukocyte migration involved in inflammatory response // inferred from electronic annotation /// 0002523 // leukocyte migration involved in inflammatory response // not recorded /// 0002842 // positive regulation of T cell mediated immune response to tumor cell // inferred from electronic annotation /// 0002842 // positive regulation of T cell mediated immune response to tumor cell // not recorded /// 0002863 // positive regulation of inflammatory response to antigenic stimulus // inferred from electronic annotation /// 0002863 // positive regulation of inflammatory response to antigenic stimulus // not recorded /// 0002904 // positive regulation of B cell apoptosis // inferred from electronic annotation /// 0002904 // positive regulation of B cell apoptosis // not recorded /// 0006800 // oxygen and reactive oxygen species metabolic process // inferred from electronic annotation /// 0006800 // oxygen and reactive oxygen species metabolic process // not recorded /// 0006955 // immune response // inferred from expression pattern /// 0007155 // cell adhesion // traceable author statement /// 0007157 // heterophilic cell-cell adhesion // inferred from electronic annotation /// 0007157 // heterophilic cell-cell adhesion // not recorded /// 0007159 // leukocyte cell-cell adhesion // inferred from electronic annotation /// 0007159 // leukocyte cell-cell adhesion // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from sequence or structural similarity /// 0007267 // cell-cell signaling // non-traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0007274 // neuromuscular synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007406 // negative regulation of neuroblast proliferation // inferred from electronic annotation /// 0007406 // negative regulation of neuroblast proliferation // not recorded /// 0008624 // induction of apoptosis by extracellular signals // inferred from electronic annotation /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0008637 // apoptotic mitochondrial changes // inferred from electronic annotation /// 0008637 // apoptotic mitochondrial changes // not recorded /// 0016337 // cell-cell adhesion // non-traceable author statement /// 0016477 // cell migration // not recorded /// 0016477 // cell migration // inferred from sequence or structural similarity /// 0016477 // cell migration // inferred from electronic annotation /// 0022407 // regulation of cell-cell adhesion // not recorded /// 0022407 // regulation of cell-cell adhesion // inferred from electronic annotation /// 0022409 // positive regulation of cell-cell adhesion // not recorded /// 0022409 // positive regulation of cell-cell adhesion // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030262 // apoptotic nuclear change // inferred from electronic annotation /// 0030262 // apoptotic nuclear change // not recorded /// 0030889 // negative regulation of B cell proliferation // inferred from electronic annotation /// 0030889 // negative regulation of B cell proliferation // not recorded /// 0031175 // neuron projection development // inferred from electronic annotation /// 0031175 // neuron projection development // not recorded /// 0031295 // T cell costimulation // inferred from sequence or structural similarity /// 0032600 // chemokine receptor transport out of membrane raft // not recorded /// 0032600 // chemokine receptor transport out of membrane raft // inferred from sequence or structural similarity /// 0032600 // chemokine receptor transport out of membrane raft // inferred from electronic annotation /// 0032913 // negative regulation of transforming growth factor-beta3 production // inferred from sequence or structural similarity /// 0033625 // positive regulation of integrin activation // inferred from electronic annotation /// 0033625 // positive regulation of integrin activation // not recorded /// 0033630 // positive regulation of cell adhesion mediated by integrin // not recorded /// 0033630 // positive regulation of cell adhesion mediated by integrin // inferred from electronic annotation /// 0033632 // regulation of cell-cell adhesion mediated by integrin // not recorded /// 0033632 // regulation of cell-cell adhesion mediated by integrin // inferred from electronic annotation /// 0033634 // positive regulation of cell-cell adhesion mediated by integrin // inferred from electronic annotation /// 0033634 // positive regulation of cell-cell adhesion mediated by integrin // not recorded /// 0034107 // negative regulation of erythrocyte clearance // inferred from electronic annotation /// 0034107 // negative regulation of erythrocyte clearance // not recorded /// 0034109 // homotypic cell-cell adhesion // inferred from electronic annotation /// 0034109 // homotypic cell-cell adhesion // not recorded /// 0034119 // negative regulation of erythrocyte aggregation // inferred from electronic annotation /// 0034119 // negative regulation of erythrocyte aggregation // not recorded /// 0042103 // positive regulation of T cell homeostatic proliferation // inferred from electronic annotation /// 0042103 // positive regulation of T cell homeostatic proliferation // not recorded /// 0042104 // positive regulation of activated T cell proliferation // inferred from sequence or structural similarity /// 0042325 // regulation of phosphorylation // inferred from sequence or structural similarity /// 0042632 // cholesterol homeostasis // not recorded /// 0042632 // cholesterol homeostasis // inferred from sequence or structural similarity /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // inferred from sequence or structural similarity /// 0043408 // regulation of MAPKKK cascade // inferred from sequence or structural similarity /// 0043627 // response to estrogen stimulus // inferred from sequence or structural similarity /// 0045577 // regulation of B cell differentiation // inferred from electronic annotation /// 0045577 // regulation of B cell differentiation // not recorded /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045730 // respiratory burst // inferred from sequence or structural similarity /// 0046014 // negative regulation of T cell homeostatic proliferation // inferred from electronic annotation /// 0046014 // negative regulation of T cell homeostatic proliferation // not recorded /// 0046641 // positive regulation of alpha-beta T cell proliferation // inferred from electronic annotation /// 0046641 // positive regulation of alpha-beta T cell proliferation // not recorded /// 0048488 // synaptic vesicle endocytosis // inferred from electronic annotation /// 0048488 // synaptic vesicle endocytosis // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050768 // negative regulation of neurogenesis // not recorded /// 0050768 // negative regulation of neurogenesis // inferred from electronic annotation /// 0050850 // positive regulation of calcium-mediated signaling // inferred from electronic annotation /// 0050850 // positive regulation of calcium-mediated signaling // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0031362 // anchored to external side of plasma membrane // inferred from direct assay /// 0031362 // anchored to external side of plasma membrane // not recorded /// 0031362 // anchored to external side of plasma membrane // inferred from electronic annotation /// 0031528 // microvillus membrane // inferred from electronic annotation /// 0031528 // microvillus membrane // not recorded /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from sequence or structural similarity /// 0046658 // anchored to plasma membrane // traceable author statement /// 0060170 // cilium membrane // inferred from electronic annotation /// 0060170 // cilium membrane // not recorded 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0030246 // carbohydrate binding // not recorded /// 0030296 // protein tyrosine kinase activator activity // inferred from sequence or structural similarity /// 0043499 // eukaryotic cell surface binding // inferred from electronic annotation /// 0043499 // eukaryotic cell surface binding // not recorded 1369954_at NM_031510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031510.1 /DB_XREF=gi:13928689 /GEN=Idh1 /FEA=FLmRNA /CNT=27 /TID=Rn.3561.1 /TIER=FL+Stack /STK=17 /UG=Rn.3561 /LL=24479 /DEF=Rattus norvegicus Isocitrate dehydrogenase 1, soluble (Idh1), mRNA. /PROD=isocitrate dehydrogenase 1, soluble /FL=gb:L35317.1 gb:NM_031510.1 NM_031510 isocitrate dehydrogenase 1 (NADP+), soluble Idh1 24479 NM_031510 0006097 // glyoxylate cycle // inferred from electronic annotation /// 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006102 // isocitrate metabolic process // inferred from direct assay /// 0006102 // isocitrate metabolic process // inferred from electronic annotation /// 0006102 // isocitrate metabolic process // not recorded /// 0006102 // isocitrate metabolic process // inferred from sequence or structural similarity /// 0006103 // 2-oxoglutarate metabolic process // inferred from electronic annotation /// 0006103 // 2-oxoglutarate metabolic process // not recorded /// 0006103 // 2-oxoglutarate metabolic process // inferred from sequence or structural similarity /// 0006740 // NADPH regeneration // not recorded /// 0006749 // glutathione metabolic process // inferred from electronic annotation /// 0006749 // glutathione metabolic process // not recorded /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0008152 // metabolic process // not recorded /// 0008585 // female gonad development // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0048545 // response to steroid hormone stimulus // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000287 // magnesium ion binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0004450 // isocitrate dehydrogenase (NADP+) activity // inferred from direct assay /// 0004450 // isocitrate dehydrogenase (NADP+) activity // inferred from electronic annotation /// 0004450 // isocitrate dehydrogenase (NADP+) activity // not recorded /// 0004450 // isocitrate dehydrogenase (NADP+) activity // traceable author statement /// 0004450 // isocitrate dehydrogenase (NADP+) activity // inferred from sequence or structural similarity /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from direct assay /// 0051287 // NAD or NADH binding // inferred from electronic annotation 1369955_at NM_134452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134452.1 /DB_XREF=gi:19745165 /GEN=Col5a1 /FEA=FLmRNA /CNT=35 /TID=Rn.117.1 /TIER=FL+Stack /STK=16 /UG=Rn.117 /LL=85490 /DEF=Rattus norvegicus collagen, type V, alpha 1 (Col5a1), mRNA. /PROD=collagen, type V, alpha 1 /FL=gb:AF272662.1 gb:NM_134452.1 NM_134452 Collagen, type V, alpha 1 Col5a1 85490 NM_134452 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0030199 // collagen fibril organization // not recorded /// 0032964 // collagen biosynthetic process // inferred from electronic annotation /// 0032964 // collagen biosynthetic process // not recorded /// 0035313 // wound healing, spreading of epidermal cells // inferred from electronic annotation /// 0035313 // wound healing, spreading of epidermal cells // not recorded /// 0043206 // fibril organization // inferred from electronic annotation /// 0043206 // fibril organization // not recorded /// 0043588 // skin development // inferred from electronic annotation /// 0043588 // skin development // not recorded /// 0045112 // integrin biosynthetic process // inferred from electronic annotation /// 0045112 // integrin biosynthetic process // not recorded /// 0048592 // eye morphogenesis // inferred from electronic annotation /// 0048592 // eye morphogenesis // not recorded /// 0051128 // regulation of cellular component organization // inferred from electronic annotation /// 0051128 // regulation of cellular component organization // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen // inferred from electronic annotation /// 0005581 // collagen // not recorded /// 0005588 // collagen type V // not recorded /// 0005588 // collagen type V // traceable author statement /// 0005588 // collagen type V // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008201 // heparin binding // inferred from direct assay /// 0008201 // heparin binding // not recorded /// 0008201 // heparin binding // inferred from electronic annotation /// 0043394 // proteoglycan binding // inferred from electronic annotation /// 0043394 // proteoglycan binding // not recorded /// 0048407 // platelet-derived growth factor binding // inferred from electronic annotation /// 0048407 // platelet-derived growth factor binding // not recorded 1369956_at NM_053783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053783.1 /DB_XREF=gi:16758623 /GEN=Ifngr /FEA=FLmRNA /CNT=21 /TID=Rn.19927.1 /TIER=FL+Stack /STK=16 /UG=Rn.19927 /LL=116465 /DEF=Rattus norvegicus interferon gamma receptor (Ifngr), mRNA. /PROD=interferon gamma receptor /FL=gb:AF201901.1 gb:NM_053783.1 NM_053783 interferon gamma receptor 1 Ifngr1 116465 NM_053783 0007596 // blood coagulation // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0031982 // vesicle // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0019955 // cytokine binding // inferred from electronic annotation 1369957_at NM_019341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019341.1 /DB_XREF=gi:9507044 /GEN=Rgs5 /FEA=FLmRNA /CNT=22 /TID=Rn.1150.1 /TIER=FL+Stack /STK=16 /UG=Rn.1150 /LL=54294 /DEF=Rattus norvegicus regulator of G-protein signaling 5 (Rgs5), mRNA. /PROD=regulator of G-protein signaling 5 /FL=gb:NM_019341.1 gb:AF241259.1 NM_019341 regulator of G-protein signaling 5 Rgs5 54294 NM_019341 0007165 // signal transduction // inferred from direct assay /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation 1369958_at NM_022542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022542.1 /DB_XREF=gi:11968135 /GEN=Arhb /FEA=FLmRNA /CNT=26 /TID=Rn.2042.1 /TIER=FL+Stack /STK=15 /UG=Rn.2042 /LL=64373 /DEF=Rattus norvegicus rhoB gene (Arhb), mRNA. /PROD=rhoB gene /FL=gb:NM_022542.1 gb:M74295.1 NM_022542 ras homolog gene family, member B Rhob 64373 NM_022542 0001525 // angiogenesis // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006927 // transformed cell apoptosis // inferred from sequence or structural similarity /// 0007155 // cell adhesion // inferred from sequence or structural similarity /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008333 // endosome to lysosome transport // not recorded /// 0008333 // endosome to lysosome transport // inferred from sequence or structural similarity /// 0008333 // endosome to lysosome transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // inferred from sequence or structural similarity /// 0045786 // negative regulation of cell cycle // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // not recorded /// 0010008 // endosome membrane // inferred from sequence or structural similarity /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // inferred from electronic annotation /// 0019003 // GDP binding // not recorded 1369959_at NM_017172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017172.1 /DB_XREF=gi:8392998 /GEN=Zfp36l1 /FEA=FLmRNA /CNT=34 /TID=Rn.6142.1 /TIER=FL+Stack /STK=15 /UG=Rn.6142 /LL=29344 /DEF=Rattus norvegicus zinc finger protein 36, C3H type-like 1 (Zfp36l1), mRNA. /PROD=zinc finger protein 36, C3H type-like 1 /FL=gb:NM_017172.1 NM_017172 zinc finger protein 36, C3H type-like 1 Zfp36l1 29344 NM_017172 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // inferred from electronic annotation /// 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // not recorded /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0006402 // mRNA catabolic process // inferred from direct assay /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006417 // regulation of translation // not recorded /// 0043488 // regulation of mRNA stability // inferred from electronic annotation /// 0043488 // regulation of mRNA stability // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from direct assay /// 0003729 // mRNA binding // not recorded /// 0003729 // mRNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017091 // AU-rich element binding // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation 1369960_at NM_031648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031648.1 /DB_XREF=gi:13928895 /GEN=Fxyd1 /FEA=FLmRNA /CNT=19 /TID=Rn.3828.1 /TIER=FL+Stack /STK=15 /UG=Rn.3828 /LL=58971 /DEF=Rattus norvegicus FXYD domain-containing ion transport regulator 1 (Fxyd1), mRNA. /PROD=phospholemman precursor /FL=gb:NM_031648.1 gb:U72246.1 NM_031648 FXYD domain-containing ion transport regulator 1 Fxyd1 58971 NM_031648 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from direct assay /// 0006936 // muscle contraction // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1369961_at NM_022538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022538.1 /DB_XREF=gi:11968129 /GEN=Ppap2a /FEA=FLmRNA /CNT=29 /TID=Rn.1944.1 /TIER=FL+Stack /STK=14 /UG=Rn.1944 /LL=64369 /DEF=Rattus norvegicus phosphatidate phosphohydrolase type 2a (Ppap2a), mRNA. /PROD=phosphatidate phosphohydrolase type 2a /FL=gb:NM_022538.1 gb:U90556.1 NM_022538 phosphatidic acid phosphatase type 2A Ppap2a 64369 NM_022538 0006470 // protein dephosphorylation // not recorded 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008195 // phosphatidate phosphatase activity // not recorded /// 0008195 // phosphatidate phosphatase activity // inferred from sequence or structural similarity /// 0008195 // phosphatidate phosphatase activity // traceable author statement /// 0008195 // phosphatidate phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042392 // sphingosine-1-phosphate phosphatase activity // not recorded 1369962_at NM_031014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031014.1 /DB_XREF=gi:13591917 /GEN=Atic /FEA=FLmRNA /CNT=26 /TID=Rn.15114.1 /TIER=FL+Stack /STK=14 /UG=Rn.15114 /LL=81643 /DEF=Rattus norvegicus 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferaseIMP cyclohydrolase (Atic), mRNA. /PROD=5-aminoimidazole-4-carboxamide ribonucleotideformyltransferaseIMP cyclohydrolase /FL=gb:NM_031014.1 gb:D89514.1 NM_031014 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase Atic 81643 NM_031014 0006164 // purine nucleotide biosynthetic process // inferred from electronic annotation /// 0006188 // IMP biosynthetic process // inferred from electronic annotation /// 0006189 // 'de novo' IMP biosynthetic process // non-traceable author statement /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // not recorded /// 0031100 // organ regeneration // inferred from expression pattern 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0003937 // IMP cyclohydrolase activity // inferred from direct assay /// 0003937 // IMP cyclohydrolase activity // inferred from electronic annotation /// 0004643 // phosphoribosylaminoimidazolecarboxamide formyltransferase activity // inferred from direct assay /// 0004643 // phosphoribosylaminoimidazolecarboxamide formyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation 1369963_at NM_053654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053654.1 /DB_XREF=gi:16758469 /GEN=Pafah1b3 /FEA=FLmRNA /CNT=20 /TID=Rn.17971.1 /TIER=FL+Stack /STK=14 /UG=Rn.17971 /LL=114113 /DEF=Rattus norvegicus platelet-activating factor acetylhydrolase, isoform 1b, alpha1 subunit (Pafah1b3), mRNA. /PROD=platelet-activating factor acetylhydrolase,isoform 1b, alpha1 subunit /FL=gb:AF016047.1 gb:NM_053654.1 NM_053654 platelet-activating factor acetylhydrolase, isoform 1b, subunit 3 Pafah1b3 114113 NM_053654 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0016042 // lipid catabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay 0003847 // 1-alkyl-2-acetylglycerophosphocholine esterase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0047179 // platelet-activating factor acetyltransferase activity // inferred from direct assay /// 0047179 // platelet-activating factor acetyltransferase activity // traceable author statement 1369964_at NM_130411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130411.1 /DB_XREF=gi:18426833 /GEN=Coro1a /FEA=FLmRNA /CNT=18 /TID=Rn.6990.1 /TIER=FL+Stack /STK=14 /UG=Rn.6990 /DEF=Rattus norvegicus coronin, actin binding protein 1A (Coro1a), mRNA. /PROD=coronin, actin binding protein 1A /FL=gb:AF416730.1 gb:NM_130411.1 NM_130411 coronin, actin binding protein 1A Coro1a 155151 NM_130411 0001845 // phagolysosome assembly // inferred from electronic annotation /// 0001845 // phagolysosome assembly // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006909 // phagocytosis // not recorded /// 0006909 // phagocytosis // inferred from electronic annotation /// 0007015 // actin filament organization // inferred from electronic annotation /// 0007015 // actin filament organization // not recorded /// 0008064 // regulation of actin polymerization or depolymerization // not recorded /// 0008064 // regulation of actin polymerization or depolymerization // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0016477 // cell migration // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030217 // T cell differentiation // non-traceable author statement /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0030595 // leukocyte chemotaxis // inferred from electronic annotation /// 0030595 // leukocyte chemotaxis // not recorded /// 0030833 // regulation of actin filament polymerization // inferred from electronic annotation /// 0030833 // regulation of actin filament polymerization // not recorded /// 0031589 // cell-substrate adhesion // inferred from electronic annotation /// 0031589 // cell-substrate adhesion // not recorded /// 0032796 // uropod organization // inferred from electronic annotation /// 0032796 // uropod organization // not recorded /// 0034097 // response to cytokine stimulus // inferred from electronic annotation /// 0034097 // response to cytokine stimulus // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0043029 // T cell homeostasis // inferred from electronic annotation /// 0043029 // T cell homeostasis // not recorded /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // not recorded /// 0050870 // positive regulation of T cell activation // not recorded /// 0050870 // positive regulation of T cell activation // inferred from electronic annotation /// 0050918 // positive chemotaxis // inferred from electronic annotation /// 0050918 // positive chemotaxis // not recorded /// 0051126 // negative regulation of actin nucleation // inferred from electronic annotation /// 0051126 // negative regulation of actin nucleation // not recorded 0001772 // immunological synapse // inferred from electronic annotation /// 0001772 // immunological synapse // not recorded /// 0001891 // phagocytic cup // inferred from electronic annotation /// 0001891 // phagocytic cup // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005938 // cell cortex // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030670 // phagocytic vesicle membrane // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // not recorded /// 0031252 // cell leading edge // not recorded /// 0031252 // cell leading edge // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0031941 // filamentous actin // not recorded /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from electronic annotation /// 0045335 // phagocytic vesicle // not recorded /// 0045335 // phagocytic vesicle // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008092 // cytoskeletal protein binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043548 // phosphoinositide 3-kinase binding // inferred from electronic annotation /// 0043548 // phosphoinositide 3-kinase binding // not recorded /// 0051015 // actin filament binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1369965_at NM_031053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031053.1 /DB_XREF=gi:13591988 /GEN=Mlh1 /FEA=FLmRNA /CNT=16 /TID=Rn.20391.1 /TIER=FL+Stack /STK=14 /UG=Rn.20391 /LL=81685 /DEF=Rattus norvegicus mismatch repair protein (Mlh1), mRNA. /PROD=mismatch repair protein 1 /FL=gb:U80054.1 gb:NM_031053.1 NM_031053 mutL homolog 1 (E. coli) Mlh1 81685 NM_031053 0000239 // pachytene // not recorded /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // not recorded /// 0000712 // resolution of meiotic recombination intermediates // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0002204 // somatic recombination of immunoglobulin genes involved in immune response // not recorded /// 0006281 // DNA repair // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006298 // mismatch repair // inferred from electronic annotation /// 0006298 // mismatch repair // not recorded /// 0006303 // double-strand break repair via nonhomologous end joining // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007060 // male meiosis chromosome segregation // not recorded /// 0007126 // meiosis // not recorded /// 0007131 // reciprocal meiotic recombination // not recorded /// 0007140 // male meiosis // not recorded /// 0007283 // spermatogenesis // inferred from expression pattern /// 0007283 // spermatogenesis // not recorded /// 0008630 // DNA damage response, signal transduction resulting in induction of apoptosis // not recorded /// 0009636 // response to toxin // inferred from expression pattern /// 0016446 // somatic hypermutation of immunoglobulin genes // not recorded /// 0016447 // somatic recombination of immunoglobulin gene segments // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043060 // meiotic metaphase I plate congression // not recorded /// 0045132 // meiotic chromosome segregation // not recorded /// 0045190 // isotype switching // not recorded /// 0045950 // negative regulation of mitotic recombination // not recorded /// 0048477 // oogenesis // not recorded /// 0051257 // spindle midzone assembly involved in meiosis // not recorded /// 0071407 // cellular response to organic cyclic substance // inferred from expression pattern 0000793 // condensed chromosome // not recorded /// 0000794 // condensed nuclear chromosome // not recorded /// 0000795 // synaptonemal complex // inferred from direct assay /// 0000795 // synaptonemal complex // not recorded /// 0001673 // male germ cell nucleus // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005694 // chromosome // not recorded /// 0005712 // chiasma // not recorded /// 0032389 // MutLalpha complex // not recorded 0003697 // single-stranded DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0030983 // mismatched DNA binding // inferred from electronic annotation /// 0032137 // guanine/thymine mispair binding // not recorded /// 0032407 // MutSalpha complex binding // not recorded /// 0043566 // structure-specific DNA binding // not recorded 1369966_a_at BG375811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375811 /DB_XREF=gi:13300283 /DB_XREF=UI-R-CS0-btf-f-11-0-UI.s1 /CLONE=UI-R-CS0-btf-f-11-0-UI /FEA=EST /CNT=30 /TID=Rn.979.2 /TIER=Stack /STK=20 /UG=Rn.979 /LL=81776 /UG_GENE=Rps24 /UG_TITLE=ribosomal protein S24 BG375811 ribosomal protein S24 Rps24 81776 NM_031112 0006364 // rRNA processing // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // non-traceable author statement /// 0006414 // translational elongation // not recorded /// 0034101 // erythrocyte homeostasis // not recorded /// 0042274 // ribosomal small subunit biogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // non-traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // not recorded /// 0015935 // small ribosomal subunit // inferred from sequence or structural similarity /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003743 // translation initiation factor activity // non-traceable author statement /// 0031369 // translation initiation factor binding // inferred from physical interaction 1369967_at NM_130755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130755.1 /DB_XREF=gi:18543176 /GEN=Cs /FEA=FLmRNA /CNT=37 /TID=Rn.18241.1 /TIER=FL+Stack /STK=13 /UG=Rn.18241 /DEF=Rattus norvegicus citrate synthase (Cs), mRNA. /PROD=citrate synthase /FL=gb:AF461496.1 gb:NM_130755.1 NM_130755 citrate synthase Cs 170587 NM_130755 0005975 // carbohydrate metabolic process // not recorded /// 0005975 // carbohydrate metabolic process // inferred from sequence or structural similarity /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006084 // acetyl-CoA metabolic process // inferred from direct assay /// 0006099 // tricarboxylic acid cycle // inferred from direct assay /// 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006101 // citrate metabolic process // inferred from direct assay /// 0006107 // oxaloacetate metabolic process // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0044262 // cellular carbohydrate metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded /// 0005759 // mitochondrial matrix // inferred from sequence or structural similarity /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0004108 // citrate (Si)-synthase activity // inferred from direct assay /// 0004108 // citrate (Si)-synthase activity // not recorded /// 0004108 // citrate (Si)-synthase activity // inferred from sequence or structural similarity /// 0004108 // citrate (Si)-synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046912 // transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer // not recorded /// 0046912 // transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer // inferred from electronic annotation 1369968_at NM_017066 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017066.1 /DB_XREF=gi:8394102 /GEN=Ptn /FEA=FLmRNA /CNT=30 /TID=Rn.1653.1 /TIER=FL+Stack /STK=13 /UG=Rn.1653 /LL=24924 /DEF=Rattus norvegicus Pleiotrophin (Heparine binding factor, Hbnf, in the mouse) (Ptn), mRNA. /PROD=pleiotrophin (Heparine binding factor, Hbnf, inthe mouse) /FL=gb:M55601.1 gb:NM_017066.1 NM_017066 pleiotrophin Ptn 24924 NM_017066 0001503 // ossification // not recorded /// 0001503 // ossification // inferred from electronic annotation /// 0007612 // learning // inferred from electronic annotation /// 0007612 // learning // not recorded /// 0030282 // bone mineralization // inferred from electronic annotation /// 0030282 // bone mineralization // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded 0008083 // growth factor activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation 1369969_at NM_013063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013063.1 /DB_XREF=gi:6978454 /GEN=Adprt /FEA=FLmRNA /CNT=26 /TID=Rn.11327.1 /TIER=FL+Stack /STK=13 /UG=Rn.11327 /LL=25591 /DEF=Rattus norvegicus ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) (Adprt), mRNA. /PROD=ADP-ribosyltransferase (NAD+; poly (ADP-ribose)polymerase) /FL=gb:U94340.1 gb:NM_013063.1 NM_013063 poly (ADP-ribose) polymerase 1 Parp1 25591 NM_013063 0000723 // telomere maintenance // inferred from electronic annotation /// 0000723 // telomere maintenance // not recorded /// 0006259 // DNA metabolic process // not recorded /// 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006284 // base-excision repair // inferred from electronic annotation /// 0006284 // base-excision repair // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006471 // protein ADP-ribosylation // inferred from direct assay /// 0006471 // protein ADP-ribosylation // not recorded /// 0006471 // protein ADP-ribosylation // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0016540 // protein autoprocessing // inferred from direct assay /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // not recorded /// 0040009 // regulation of growth rate // inferred from electronic annotation /// 0040009 // regulation of growth rate // not recorded /// 0042769 // DNA damage response, detection of DNA damage // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from direct assay /// 0003950 // NAD+ ADP-ribosyltransferase activity // not recorded /// 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016763 // transferase activity, transferring pentosyl groups // non-traceable author statement /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded /// 0051287 // NAD or NADH binding // inferred from direct assay /// 0051287 // NAD or NADH binding // inferred from electronic annotation 1369970_at NM_031827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031827.1 /DB_XREF=gi:13929181 /GEN=Vamp8 /FEA=FLmRNA /CNT=21 /TID=Rn.29881.1 /TIER=FL+Stack /STK=13 /UG=Rn.29881 /LL=83730 /DEF=Rattus norvegicus vesicle-associated membrane protein 8 (endobrevin) (Vamp8), mRNA. /PROD=vesicle-associated membrane protein 8(endobrevin) /FL=gb:AF132812.1 gb:NM_031827.1 NM_031827 vesicle-associated membrane protein 8 Vamp8 83730 NM_031827 0006461 // protein complex assembly // inferred from direct assay /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0006944 // cellular membrane fusion // inferred from direct assay /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031201 // SNARE complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1369971_a_at AB046616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB046616.1 /DB_XREF=gi:9588097 /GEN=auf1 /FEA=FLmRNA /CNT=2 /TID=Rn.8614.2 /TIER=FL /STK=1 /UG=Rn.8614 /LL=79256 /DEF=Rattus norvegicus mRNA for RNA binding protein p42 AUF1, complete cds. /PROD=RNA binding protein p42 AUF1 /FL=gb:AB046616.1 gb:AB046618.1 AB046616 heterogeneous nuclear ribonucleoprotein D Hnrpd 79256 NM_001082539 /// NM_001082540 /// NM_001082541 /// NM_024404 0000291 // nuclear-transcribed mRNA catabolic process, exonucleolytic // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // traceable author statement /// 0008380 // RNA splicing // not recorded /// 0008380 // RNA splicing // inferred from electronic annotation /// 0043488 // regulation of mRNA stability // not recorded /// 0043488 // regulation of mRNA stability // inferred from electronic annotation /// 0048255 // mRNA stabilization // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042162 // telomeric DNA binding // not recorded /// 0042162 // telomeric DNA binding // inferred from sequence or structural similarity /// 0042162 // telomeric DNA binding // inferred from electronic annotation 1369972_at NM_057108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057108.1 /DB_XREF=gi:16923953 /GEN=Serpinb5 /FEA=FLmRNA /CNT=28 /TID=Rn.25752.1 /TIER=FL+Stack /STK=13 /UG=Rn.25752 /LL=116589 /DEF=Rattus norvegicus serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 5 (Serpinb5), mRNA. /PROD=serine (or cysteine) proteinase inhibitor, cladeB (ovalbumin), member 5 /FL=gb:NM_057108.1 gb:U58857.1 NM_057108 F-box protein 21 Fbxo21 360818 NM_001108338 0002009 // morphogenesis of an epithelium // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0050678 // regulation of epithelial cell proliferation // inferred from electronic annotation /// 0060512 // prostate gland morphogenesis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1369973_at NM_017154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017154.1 /DB_XREF=gi:8394543 /GEN=Xdh /FEA=FLmRNA /CNT=18 /TID=Rn.7324.1 /TIER=FL+Stack /STK=13 /UG=Rn.7324 /LL=29289 /DEF=Rattus norvegicus xanthine dehydrogenase (Xdh), mRNA. /PROD=xanthine dehydrogenase /FL=gb:J05579.1 gb:NM_017154.1 NM_017154 xanthine dehydrogenase Xdh 497811 NM_017154 0007595 // lactation // not recorded /// 0009115 // xanthine catabolic process // inferred from direct assay /// 0009115 // xanthine catabolic process // not recorded /// 0009115 // xanthine catabolic process // inferred from sequence or structural similarity /// 0010044 // response to aluminum ion // inferred from direct assay /// 0030856 // regulation of epithelial cell differentiation // not recorded /// 0045453 // bone resorption // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005777 // peroxisome // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004854 // xanthine dehydrogenase activity // inferred from direct assay /// 0004854 // xanthine dehydrogenase activity // not recorded /// 0004854 // xanthine dehydrogenase activity // inferred from electronic annotation /// 0004855 // xanthine oxidase activity // inferred from direct assay /// 0004855 // xanthine oxidase activity // not recorded /// 0004855 // xanthine oxidase activity // inferred from sequence or structural similarity /// 0004855 // xanthine oxidase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // not recorded /// 0030151 // molybdenum ion binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043546 // molybdopterin cofactor binding // inferred from direct assay /// 0043546 // molybdopterin cofactor binding // not recorded /// 0043546 // molybdopterin cofactor binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from direct assay /// 0050660 // FAD or FADH2 binding // not recorded /// 0050660 // FAD or FADH2 binding // inferred from sequence or structural similarity /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // not recorded /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from sequence or structural similarity /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation 1369974_at NM_012663 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012663.1 /DB_XREF=gi:6981613 /GEN=Vamp2 /FEA=FLmRNA /CNT=20 /TID=Rn.31977.1 /TIER=FL+Stack /STK=13 /UG=Rn.31977 /LL=24803 /DEF=Rattus norvegicus Vesicle-associated membrane protein (synaptobrevin 2) (Vamp2), mRNA. /PROD=synaptobrevin 2 (vesicle-associated membraneprotein, VAMP-2) /FL=gb:NM_012663.1 gb:M24105.1 NM_012663 vesicle-associated membrane protein 2 Vamp2 24803 NM_012663 0006461 // protein complex assembly // inferred from direct assay /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0006944 // cellular membrane fusion // not recorded /// 0009749 // response to glucose stimulus // inferred from direct assay /// 0015031 // protein transport // inferred from mutant phenotype /// 0016044 // cellular membrane organization // not recorded /// 0016079 // synaptic vesicle exocytosis // not recorded /// 0016192 // vesicle-mediated transport // inferred from mutant phenotype /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0017156 // calcium ion-dependent exocytosis // not recorded /// 0017157 // regulation of exocytosis // inferred from mutant phenotype /// 0017157 // regulation of exocytosis // not recorded /// 0017157 // regulation of exocytosis // traceable author statement 0005792 // microsome // inferred from direct assay /// 0005802 // trans-Golgi network // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0008021 // synaptic vesicle // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // not recorded /// 0030141 // stored secretory granule // inferred from direct assay /// 0030141 // stored secretory granule // not recorded /// 0030667 // secretory granule membrane // not recorded /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // not recorded /// 0031201 // SNARE complex // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0042589 // zymogen granule membrane // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0060203 // clathrin sculpted glutamate transport vesicle membrane // not recorded /// 0070032 // synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex // inferred from direct assay /// 0070044 // synaptobrevin 2-SNAP-25-syntaxin-1a complex // inferred from direct assay 0000149 // SNARE binding // inferred from direct assay /// 0000149 // SNARE binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // not recorded /// 0005543 // phospholipid binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0017022 // myosin binding // inferred from physical interaction /// 0017075 // syntaxin-1 binding // inferred from direct assay /// 0017075 // syntaxin-1 binding // inferred from physical interaction /// 0019905 // syntaxin binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction 1369975_at NM_023027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023027.1 /DB_XREF=gi:12711699 /GEN=Secp43 /FEA=FLmRNA /CNT=18 /TID=Rn.20160.1 /TIER=FL+Stack /STK=13 /UG=Rn.20160 /LL=65241 /DEF=Rattus norvegicus tRNA selenocysteine associated protein (Secp43), mRNA. /PROD=tRNA selenocysteine associated protein /FL=gb:NM_023027.1 gb:AF181856.1 NM_023027 tRNA selenocysteine associated protein Secp43 65241 NM_023027 0001514 // selenocysteine incorporation // inferred from sequence or structural similarity /// 0006412 // translation // inferred from electronic annotation 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000049 // tRNA binding // inferred from direct assay /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay 1369976_at NM_053319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053319.1 /DB_XREF=gi:16758015 /GEN=Pin /FEA=FLmRNA /CNT=50 /TID=Rn.35769.1 /TIER=FL+Stack /STK=12 /UG=Rn.35769 /LL=58945 /DEF=Rattus norvegicus dynein, cytoplasmic, light chain 1 (Pin), mRNA. /PROD=dynein, cytoplasmic, light peptide /FL=gb:NM_053319.1 gb:U66461.1 NM_053319 dynein light chain LC8-type 1 Dynll1 58945 NM_053319 0006350 // transcription // inferred from electronic annotation /// 0006809 // nitric oxide biosynthetic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0042133 // neurotransmitter metabolic process // traceable author statement /// 0042326 // negative regulation of phosphorylation // inferred from electronic annotation /// 0042326 // negative regulation of phosphorylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005856 // cytoskeleton // not recorded /// 0005868 // cytoplasmic dynein complex // inferred from direct assay /// 0005868 // cytoplasmic dynein complex // inferred from sequence or structural similarity /// 0005868 // cytoplasmic dynein complex // traceable author statement /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0030286 // dynein complex // inferred from electronic annotation 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0004857 // enzyme inhibitor activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0019899 // enzyme binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0030235 // nitric-oxide synthase regulator activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay 1369977_at NM_017237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017237.1 /DB_XREF=gi:8394505 /GEN=Uchl1 /FEA=FLmRNA /CNT=39 /TID=Rn.21315.1 /TIER=FL+Stack /STK=12 /UG=Rn.21315 /LL=29545 /DEF=Rattus norvegicus ubiquitin carboxy-terminal hydrolase L1 (Uchl1), mRNA. /PROD=ubiquitin carboxy-terminal hydrolase L1 /FL=gb:NM_017237.1 gb:D10699.1 NM_017237 ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) Uchl1 29545 NM_017237 0006511 // ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006950 // response to stress // not recorded /// 0007409 // axonogenesis // not recorded /// 0007412 // axon target recognition // not recorded /// 0007628 // adult walking behavior // not recorded /// 0008152 // metabolic process // not recorded /// 0008283 // cell proliferation // not recorded /// 0016579 // protein deubiquitination // not recorded /// 0019233 // sensory perception of pain // inferred from direct assay /// 0019896 // axon transport of mitochondrion // not recorded /// 0042755 // eating behavior // not recorded /// 0043407 // negative regulation of MAP kinase activity // not recorded /// 0050905 // neuromuscular process // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0030424 // axon // not recorded /// 0043025 // neuronal cell body // not recorded 0004197 // cysteine-type endopeptidase activity // not recorded /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008242 // omega peptidase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0031694 // alpha-2A adrenergic receptor binding // not recorded /// 0043130 // ubiquitin binding // not recorded 1369978_at NM_057131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057131.1 /DB_XREF=gi:16923983 /GEN=Prpsap2 /FEA=FLmRNA /CNT=23 /TID=Rn.2681.1 /TIER=FL+Stack /STK=12 /UG=Rn.2681 /LL=117272 /DEF=Rattus norvegicus phosphoribosyl pyrophosphate synthetase-associated protein 2 (Prpsap2), mRNA. /PROD=phosphoribosyl pyrophosphatesynthetase-associated protein 2 /FL=gb:D84434.1 gb:NM_057131.1 NM_057131 phosphoribosyl pyrophosphate synthetase-associated protein 2 Prpsap2 117272 NM_057131 0009165 // nucleotide biosynthetic process // inferred from electronic annotation 0043234 // protein complex // inferred from direct assay 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004749 // ribose phosphate diphosphokinase activity // inferred from electronic annotation 1369979_at NM_130413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130413.1 /DB_XREF=gi:18426837 /GEN=Scap2 /FEA=FLmRNA /CNT=23 /TID=Rn.17562.1 /TIER=FL+Stack /STK=12 /UG=Rn.17562 /DEF=Rattus norvegicus src family associated phosphoprotein 2 (Scap2), mRNA. /PROD=src family associated phosphoprotein 2 /FL=gb:AF302132.1 gb:NM_130413.1 NM_130413 src kinase associated phosphoprotein 2 Skap2 155183 NM_130413 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0042113 // B cell activation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369980_s_at NM_053814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053814.1 /DB_XREF=gi:16758657 /GEN=Rhoip3 /FEA=FLmRNA /CNT=33 /TID=Rn.2641.1 /TIER=FL+Stack /STK=12 /UG=Rn.2641 /LL=116504 /DEF=Rattus norvegicus Rho interacting protein 3 (Rhoip3), mRNA. /PROD=Rho interacting protein 3 /FL=gb:NM_053814.1 gb:AF311311.1 NM_053814 myosin phosphatase Rho interacting protein Mprip 116504 NM_001034022 /// NM_053814 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369981_at NM_031624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031624.1 /DB_XREF=gi:13928859 /GEN=Igbp1 /FEA=FLmRNA /CNT=24 /TID=Rn.7079.1 /TIER=FL+Stack /STK=12 /UG=Rn.7079 /LL=58845 /DEF=Rattus norvegicus immunoglobulin (CD79A) binding protein 1 (Igbp1), mRNA. /PROD=immunoglobulin (CD79A) binding protein 1 /FL=gb:AF000577.2 gb:NM_031624.1 NM_031624 immunoglobulin (CD79A) binding protein 1 Igbp1 58845 NM_031624 0009607 // response to biotic stimulus // inferred from electronic annotation /// 0009966 // regulation of signal transduction // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0032873 // negative regulation of stress-activated MAPK cascade // not recorded /// 0034612 // response to tumor necrosis factor // not recorded /// 0035306 // positive regulation of dephosphorylation // not recorded /// 0035308 // negative regulation of protein dephosphorylation // not recorded /// 0042113 // B cell activation // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043154 // negative regulation of caspase activity // not recorded /// 0060632 // regulation of microtubule-based movement // not recorded /// 0070555 // response to interleukin-1 // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // not recorded /// 0015630 // microtubule cytoskeleton // not recorded 0005515 // protein binding // not recorded /// 0008601 // protein phosphatase type 2A regulator activity // not recorded /// 0031434 // mitogen-activated protein kinase kinase binding // not recorded 1369982_at NM_031008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031008.1 /DB_XREF=gi:13591907 /GEN=Loc81637 /FEA=FLmRNA /CNT=19 /TID=Rn.34928.1 /TIER=FL+Stack /STK=12 /UG=Rn.34928 /LL=81637 /DEF=Rattus norvegicus alpha-c large chain of the protein complex AP-2 associated with clathrin (Loc81637), mRNA. /PROD=alpha-c large chain of the protein complex AP-2associated with clathrin /FL=gb:NM_031008.1 NM_031008 adaptor-related protein complex 2, alpha 2 subunit Ap2a2 81637 NM_031008 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0050690 // regulation of defense response to virus by virus // not recorded 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030117 // membrane coat // not recorded /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 1369983_at NM_031116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031116.1 /DB_XREF=gi:13592082 /GEN=Scya5 /FEA=FLmRNA /CNT=18 /TID=Rn.8019.1 /TIER=FL+Stack /STK=12 /UG=Rn.8019 /LL=81780 /DEF=Rattus norvegicus small inducible cytokine A5 (RANTES) (Scya5), mRNA. /PROD=small inducible cytokine A5 (RANTES) /FL=gb:NM_031116.1 gb:U06436.1 NM_031116 chemokine (C-C motif) ligand 5 Ccl5 81780 NM_031116 0002544 // chronic inflammatory response // inferred from expression pattern /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from expression pattern /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0031622 // positive regulation of fever // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0034097 // response to cytokine stimulus // not recorded /// 0034097 // response to cytokine stimulus // inferred from electronic annotation /// 0034612 // response to tumor necrosis factor // inferred from electronic annotation /// 0034612 // response to tumor necrosis factor // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045071 // negative regulation of viral genome replication // inferred from electronic annotation /// 0045071 // negative regulation of viral genome replication // not recorded /// 0045672 // positive regulation of osteoclast differentiation // inferred from direct assay /// 0048247 // lymphocyte chemotaxis // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from direct assay /// 0008009 // chemokine activity // inferred from electronic annotation /// 0042056 // chemoattractant activity // inferred from electronic annotation /// 0042056 // chemoattractant activity // not recorded 1369984_at NM_053540 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053540.1 /DB_XREF=gi:16758307 /GEN=Cox17 /FEA=FLmRNA /CNT=17 /TID=Rn.19207.1 /TIER=FL+Stack /STK=12 /UG=Rn.19207 /LL=89786 /DEF=Rattus norvegicus cytochrome c oxidase, subunit XVII assembly protein homolog (yeast) (Cox17), mRNA. /PROD=cytochrome c oxidase, subunit XVII assemblyprotein homolog (yeast) /FL=gb:NM_053540.1 gb:AB032178.1 NM_053540 COX17 cytochrome c oxidase assembly homolog (S. cerevisiae) Cox17 89786 NM_053540 0006825 // copper ion transport // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0007507 // heart development // inferred from expression pattern /// 0050790 // regulation of catalytic activity // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation 0005507 // copper ion binding // not recorded /// 0005507 // copper ion binding // inferred from electronic annotation /// 0008047 // enzyme activator activity // inferred from electronic annotation /// 0008047 // enzyme activator activity // not recorded /// 0016531 // copper chaperone activity // inferred from electronic annotation 1369985_at NM_012936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012936.1 /DB_XREF=gi:6978710 /GEN=Crybb1 /FEA=FLmRNA /CNT=17 /TID=Rn.10602.1 /TIER=FL+Stack /STK=12 /UG=Rn.10602 /LL=25421 /DEF=Rattus norvegicus Crystallin beta B1 (Crybb1), mRNA. /PROD=crystallin beta B1 /FL=gb:NM_012936.1 NM_012936 crystallin, beta B1 Crybb1 25421 NM_012936 0005212 // structural constituent of eye lens // inferred from direct assay /// 0005212 // structural constituent of eye lens // inferred from electronic annotation 1369986_at NM_033349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_033349.1 /DB_XREF=gi:15375319 /GEN=Hagh /FEA=FLmRNA /CNT=17 /TID=Rn.11048.1 /TIER=FL+Stack /STK=12 /UG=Rn.11048 /LL=24439 /DEF=Rattus norvegicus Hydroxyacyl glutathione hydrolase (Hagh), mRNA. /PROD=hydroxyacyl glutathione hydrolase /FL=gb:NM_033349.1 NM_033349 hydroxyacyl glutathione hydrolase Hagh 24439 NM_033349 0005975 // carbohydrate metabolic process // inferred from direct assay /// 0006749 // glutathione metabolic process // inferred from direct assay /// 0006750 // glutathione biosynthetic process // inferred from electronic annotation /// 0006750 // glutathione biosynthetic process // not recorded /// 0007283 // spermatogenesis // non-traceable author statement /// 0008152 // metabolic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded 0004416 // hydroxyacylglutathione hydrolase activity // inferred from direct assay /// 0004416 // hydroxyacylglutathione hydrolase activity // not recorded /// 0004416 // hydroxyacylglutathione hydrolase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1369987_at NM_053651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053651.1 /DB_XREF=gi:16758951 /GEN=Csx /FEA=FLmRNA /CNT=19 /TID=Rn.6179.1 /TIER=FL+Stack /STK=12 /UG=Rn.6179 /LL=114109 /DEF=Rattus norvegicus NK2 transcription factor related, locus 5 (Drosophila) (Csx), mRNA. /PROD=NK2 transcription factor related, locus 5(Drosophila) /FL=gb:AF006664.1 gb:NM_053651.1 NM_053651 NK2 transcription factor related, locus 5 (Drosophila) Nkx2-5 114109 NM_053651 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001947 // heart looping // inferred from electronic annotation /// 0001947 // heart looping // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003151 // outflow tract morphogenesis // inferred from electronic annotation /// 0003151 // outflow tract morphogenesis // not recorded /// 0003161 // cardiac conduction system development // not recorded /// 0003161 // cardiac conduction system development // inferred from electronic annotation /// 0003162 // atrioventricular node development // inferred from electronic annotation /// 0003162 // atrioventricular node development // not recorded /// 0003166 // bundle of His development // inferred from electronic annotation /// 0003166 // bundle of His development // not recorded /// 0003168 // cardiac Purkinje fiber cell differentiation // inferred from electronic annotation /// 0003168 // cardiac Purkinje fiber cell differentiation // not recorded /// 0003208 // cardiac ventricle morphogenesis // not recorded /// 0003208 // cardiac ventricle morphogenesis // inferred from electronic annotation /// 0003211 // cardiac ventricle formation // inferred from electronic annotation /// 0003211 // cardiac ventricle formation // not recorded /// 0003222 // ventricular trabecular myocardium morphogenesis // inferred from electronic annotation /// 0003222 // ventricular trabecular myocardium morphogenesis // not recorded /// 0003278 // apoptosis involved in heart morphogenesis // inferred from electronic annotation /// 0003278 // apoptosis involved in heart morphogenesis // not recorded /// 0003285 // septum secundum development // inferred from electronic annotation /// 0003285 // septum secundum development // not recorded /// 0003342 // proepicardium development // inferred from electronic annotation /// 0003342 // proepicardium development // not recorded /// 0003350 // pulmonary myocardium development // inferred from electronic annotation /// 0003350 // pulmonary myocardium development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007512 // adult heart development // inferred from electronic annotation /// 0007512 // adult heart development // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010667 // negative regulation of cardiac muscle cell apoptosis // inferred from electronic annotation /// 0010667 // negative regulation of cardiac muscle cell apoptosis // not recorded /// 0010735 // positive regulation of transcription via serum response element binding // inferred from electronic annotation /// 0010735 // positive regulation of transcription via serum response element binding // not recorded /// 0010765 // positive regulation of sodium ion transport // inferred from electronic annotation /// 0010765 // positive regulation of sodium ion transport // not recorded /// 0010832 // negative regulation of myotube differentiation // inferred from electronic annotation /// 0010832 // negative regulation of myotube differentiation // not recorded /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030878 // thyroid gland development // inferred from electronic annotation /// 0030878 // thyroid gland development // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0035050 // embryonic heart tube development // not recorded /// 0035050 // embryonic heart tube development // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0043586 // tongue development // inferred from electronic annotation /// 0043586 // tongue development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045823 // positive regulation of heart contraction // inferred from electronic annotation /// 0045823 // positive regulation of heart contraction // not recorded /// 0045885 // positive regulation of survival gene product expression // inferred from electronic annotation /// 0045885 // positive regulation of survival gene product expression // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048536 // spleen development // inferred from electronic annotation /// 0048536 // spleen development // not recorded /// 0048738 // cardiac muscle tissue development // not recorded /// 0048738 // cardiac muscle tissue development // inferred from electronic annotation /// 0051891 // positive regulation of cardioblast differentiation // inferred from electronic annotation /// 0051891 // positive regulation of cardioblast differentiation // not recorded /// 0051929 // positive regulation of calcium ion transport via voltage-gated calcium channel activity // inferred from electronic annotation /// 0051929 // positive regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0055005 // ventricular cardiac myofibril development // inferred from electronic annotation /// 0055005 // ventricular cardiac myofibril development // not recorded /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // not recorded /// 0055008 // cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055008 // cardiac muscle tissue morphogenesis // not recorded /// 0055014 // atrial cardiac muscle cell development // inferred from electronic annotation /// 0055014 // atrial cardiac muscle cell development // not recorded /// 0055015 // ventricular cardiac muscle cell development // not recorded /// 0055015 // ventricular cardiac muscle cell development // inferred from electronic annotation /// 0055117 // regulation of cardiac muscle contraction // inferred from electronic annotation /// 0055117 // regulation of cardiac muscle contraction // not recorded /// 0060037 // pharyngeal system development // inferred from electronic annotation /// 0060037 // pharyngeal system development // not recorded /// 0060048 // cardiac muscle contraction // not recorded /// 0060048 // cardiac muscle contraction // inferred from electronic annotation /// 0060261 // positive regulation of transcription initiation from RNA polymerase II promoter // inferred from electronic annotation /// 0060261 // positive regulation of transcription initiation from RNA polymerase II promoter // not recorded /// 0060347 // heart trabecula formation // inferred from electronic annotation /// 0060347 // heart trabecula formation // not recorded /// 0060412 // ventricular septum morphogenesis // inferred from electronic annotation /// 0060412 // ventricular septum morphogenesis // not recorded /// 0060413 // atrial septum morphogenesis // inferred from electronic annotation /// 0060413 // atrial septum morphogenesis // not recorded /// 0060928 // atrioventricular node cell development // inferred from electronic annotation /// 0060928 // atrioventricular node cell development // not recorded /// 0060929 // atrioventricular node cell fate commitment // inferred from electronic annotation /// 0060929 // atrioventricular node cell fate commitment // not recorded /// 0060971 // embryonic heart tube left/right pattern formation // inferred from electronic annotation /// 0060971 // embryonic heart tube left/right pattern formation // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0010736 // serum response element binding // inferred from electronic annotation /// 0010736 // serum response element binding // not recorded /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1369988_at NM_017002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017002.1 /DB_XREF=gi:8393318 /GEN=Epor /FEA=FLmRNA /CNT=14 /TID=Rn.22394.1 /TIER=FL+Stack /STK=12 /UG=Rn.22394 /LL=24336 /DEF=Rattus norvegicus Erythropoietin receptor (Epor), mRNA. /PROD=erythropoietin receptor /FL=gb:D13566.1 gb:NM_017002.1 NM_017002 erythropoietin receptor Epor 24336 NM_017002 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0046697 // decidualization // inferred from electronic annotation /// 0046697 // decidualization // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004900 // erythropoietin receptor activity // inferred from direct assay /// 0004900 // erythropoietin receptor activity // not recorded /// 0004900 // erythropoietin receptor activity // inferred from sequence or structural similarity /// 0004900 // erythropoietin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1369989_at NM_022601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022601.1 /DB_XREF=gi:12018269 /GEN=U91561 /FEA=FLmRNA /CNT=16 /TID=Rn.6299.1 /TIER=FL+Stack /STK=12 /UG=Rn.6299 /LL=64533 /DEF=Rattus norvegicus pyridoxine 5-phosphate oxidase (U91561), mRNA. /PROD=pyridoxine 5-phosphate oxidase /FL=gb:NM_022601.1 gb:U91561.1 NM_022601 pyridoxine 5'-phosphate oxidase Pnpo 64533 NM_022601 0008615 // pyridoxine biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0004733 // pyridoxamine-phosphate oxidase activity // inferred from direct assay /// 0004733 // pyridoxamine-phosphate oxidase activity // inferred from electronic annotation /// 0010181 // FMN binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016638 // oxidoreductase activity, acting on the CH-NH2 group of donors // inferred from electronic annotation 1369990_at NM_022183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022183.1 /DB_XREF=gi:11559944 /GEN=Top2a /FEA=FLmRNA /CNT=40 /TID=Rn.55119.1 /TIER=FL+Stack /STK=11 /UG=Rn.55119 /LL=29390 /DEF=Rattus norvegicus topoisomerase (DNA) II alpha (Top2a), mRNA. /PROD=topoisomerase (DNA) II alpha /FL=gb:NM_022183.1 NM_022183 protein tyrosine phosphatase, mitochondrial 1 Ptpmt1 29390 NM_001105726 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006265 // DNA topological change // inferred from direct assay /// 0006265 // DNA topological change // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030261 // chromosome condensation // inferred from electronic annotation /// 0040016 // embryonic cleavage // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0071107 // response to parathyroid hormone stimulus // inferred from expression pattern 0000793 // condensed chromosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0009330 // DNA topoisomerase complex (ATP-hydrolyzing) // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // traceable author statement /// 0003682 // chromatin binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003916 // DNA topoisomerase activity // inferred from direct assay /// 0003916 // DNA topoisomerase activity // inferred from electronic annotation /// 0003918 // DNA topoisomerase (ATP-hydrolyzing) activity // inferred from direct assay /// 0003918 // DNA topoisomerase (ATP-hydrolyzing) activity // inferred from electronic annotation /// 0004439 // phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity // inferred from electronic annotation /// 0004439 // phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity // not recorded /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // traceable author statement /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043566 // structure-specific DNA binding // inferred from direct assay 1369991_at NM_031723 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031723.1 /DB_XREF=gi:13929015 /GEN=Spc18 /FEA=FLmRNA /CNT=24 /TID=Rn.13070.1 /TIER=FL+Stack /STK=11 /UG=Rn.13070 /LL=65166 /DEF=Rattus norvegicus signal peptidase complex (18kD) (Spc18), mRNA. /PROD=signal peptidase complex (18kD) /FL=gb:L11319.1 gb:NM_031723.1 NM_031723 SEC11 homolog A (S. cerevisiae) Sec11a 65166 NM_031723 0006465 // signal peptide processing // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1369992_at NM_031978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031978.1 /DB_XREF=gi:14010878 /GEN=PSMD1 /FEA=FLmRNA /CNT=34 /TID=Rn.2891.1 /TIER=FL+Stack /STK=11 /UG=Rn.2891 /LL=83806 /DEF=Rattus norvegicus 26S proteasome, subunit p112 (PSMD1), mRNA. /PROD=26S proteasome, subunit p112 /FL=gb:NM_031978.1 NM_031978 proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 Psmd1 83806 NM_031978 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0042176 // regulation of protein catabolic process // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030234 // enzyme regulator activity // inferred from electronic annotation 1369993_at NM_133605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133605.1 /DB_XREF=gi:19424315 /GEN=Camk2g /FEA=FLmRNA /CNT=20 /TID=Rn.10961.1 /TIER=FL+Stack /STK=11 /UG=Rn.10961 /LL=171140 /DEF=Rattus norvegicus calciumcalmodulin-dependent protein kinase (CaM kinase) II gamma (Camk2g), mRNA. /PROD=calciumcalmodulin-dependent protein kinase (CaMkinase) II gamma /FL=gb:J04063.1 gb:NM_133605.1 NM_133605 calcium/calmodulin-dependent protein kinase II gamma Camk2g 171140 NM_133605 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0001666 // response to hypoxia // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006979 // response to oxidative stress // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // traceable author statement 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005954 // calcium- and calmodulin-dependent protein kinase complex // traceable author statement /// 0030666 // endocytic vesicle membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from direct assay /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1369994_at NM_053670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053670.1 /DB_XREF=gi:19526762 /GEN=Crcp /FEA=FLmRNA /CNT=25 /TID=Rn.9449.1 /TIER=FL+Stack /STK=11 /UG=Rn.9449 /DEF=Rattus norvegicus calcitonin gene-related peptide-receptor component protein (Crcp), mRNA. /PROD=calcitonin gene-related peptide-receptorcomponent protein /FL=gb:AF440799.2 gb:NM_053670.1 NM_053670 CGRP receptor component Crcp 114205 NM_053670 0006350 // transcription // inferred from electronic annotation /// 0006383 // transcription from RNA polymerase III promoter // not recorded /// 0006383 // transcription from RNA polymerase III promoter // inferred from sequence or structural similarity /// 0006950 // response to stress // inferred from expression pattern /// 0006954 // inflammatory response // inferred from direct assay /// 0007165 // signal transduction // not recorded /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // not recorded /// 0009615 // response to virus // inferred from electronic annotation /// 0044237 // cellular metabolic process // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0001669 // acrosomal vesicle // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009360 // DNA polymerase III complex // not recorded /// 0009360 // DNA polymerase III complex // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0001635 // calcitonin gene-related polypeptide receptor activity // inferred from electronic annotation /// 0001635 // calcitonin gene-related polypeptide receptor activity // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // not recorded /// 0003899 // DNA-directed RNA polymerase activity // inferred from sequence or structural similarity /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation 1369995_at NM_130406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130406.1 /DB_XREF=gi:18426825 /GEN=Faf1 /FEA=FLmRNA /CNT=20 /TID=Rn.19001.1 /TIER=FL+Stack /STK=11 /UG=Rn.19001 /DEF=Rattus norvegicus Fas-associated factor 1 (Faf1), mRNA. /PROD=Fas-associated factor 1 /FL=gb:NM_130406.1 gb:AF293459.1 NM_130406 Fas (TNFRSF6) associated factor 1 Faf1 140657 NM_130406 0006915 // apoptosis // inferred from electronic annotation /// 0007253 // cytoplasmic sequestering of NF-kappaB // not recorded /// 0007253 // cytoplasmic sequestering of NF-kappaB // inferred from sequence or structural similarity /// 0007253 // cytoplasmic sequestering of NF-kappaB // inferred from electronic annotation /// 0008219 // cell death // not recorded /// 0008219 // cell death // inferred from sequence or structural similarity /// 0008219 // cell death // inferred from electronic annotation /// 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0030155 // regulation of cell adhesion // not recorded /// 0031334 // positive regulation of protein complex assembly // not recorded /// 0031334 // positive regulation of protein complex assembly // inferred from sequence or structural similarity /// 0031334 // positive regulation of protein complex assembly // inferred from electronic annotation /// 0042176 // regulation of protein catabolic process // not recorded /// 0042176 // regulation of protein catabolic process // inferred from sequence or structural similarity /// 0042176 // regulation of protein catabolic process // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0031072 // heat shock protein binding // not recorded /// 0031072 // heat shock protein binding // inferred from sequence or structural similarity /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051059 // NF-kappaB binding // inferred from electronic annotation /// 0051059 // NF-kappaB binding // not recorded 1369996_at NM_031335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031335.1 /DB_XREF=gi:13786165 /GEN=LOC83503 /FEA=FLmRNA /CNT=19 /TID=Rn.28212.1 /TIER=FL+Stack /STK=11 /UG=Rn.28212 /LL=83503 /DEF=Rattus norvegicus polymerase II (LOC83503), mRNA. /PROD=polymerase II /FL=gb:NM_031335.1 gb:AB017711.1 NM_031335 polymerase (RNA) II (DNA directed) polypeptide F Polr2f 83503 NM_031335 0006350 // transcription // inferred from electronic annotation /// 0006351 // transcription, DNA-dependent // inferred from electronic annotation /// 0006360 // transcription from RNA polymerase I promoter // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0006383 // transcription from RNA polymerase III promoter // traceable author statement /// 0008152 // metabolic process // not recorded /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005665 // DNA-directed RNA polymerase II, core complex // not recorded /// 0005665 // DNA-directed RNA polymerase II, core complex // inferred from sequence or structural similarity /// 0005665 // DNA-directed RNA polymerase II, core complex // traceable author statement /// 0005666 // DNA-directed RNA polymerase III complex // traceable author statement /// 0005730 // nucleolus // not recorded /// 0005736 // DNA-directed RNA polymerase I complex // traceable author statement /// 0030880 // RNA polymerase complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // not recorded /// 0003899 // DNA-directed RNA polymerase activity // traceable author statement /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from sequence or structural similarity 1369997_at NM_031820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031820.1 /DB_XREF=gi:13929169 /GEN=Dvl1 /FEA=FLmRNA /CNT=16 /TID=Rn.13056.1 /TIER=FL+Stack /STK=11 /UG=Rn.13056 /LL=83721 /DEF=Rattus norvegicus dishevelled 1 (Dvl1), mRNA. /PROD=dishevelled 1 /FL=gb:AF143546.2 gb:AF143545.2 gb:NM_031820.1 NM_031820 dishevelled, dsh homolog 1 (Drosophila) Dvl1 83721 NM_031820 0001505 // regulation of neurotransmitter levels // not recorded /// 0001505 // regulation of neurotransmitter levels // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007528 // neuromuscular junction development // inferred from electronic annotation /// 0007528 // neuromuscular junction development // not recorded /// 0016055 // Wnt receptor signaling pathway // traceable author statement /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0021915 // neural tube development // inferred from electronic annotation /// 0021915 // neural tube development // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030177 // positive regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0034504 // protein localization in nucleus // inferred from electronic annotation /// 0034504 // protein localization in nucleus // not recorded /// 0043113 // receptor clustering // inferred from electronic annotation /// 0043113 // receptor clustering // not recorded /// 0048813 // dendrite morphogenesis // inferred from electronic annotation /// 0048813 // dendrite morphogenesis // not recorded /// 0050808 // synapse organization // not recorded /// 0050808 // synapse organization // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0019717 // synaptosome // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0031410 // cytoplasmic vesicle // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0048365 // Rac GTPase binding // inferred from physical interaction 1369998_at NM_024152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024152.1 /DB_XREF=gi:13162344 /GEN=Arf6 /FEA=FLmRNA /CNT=16 /TID=Rn.6993.1 /TIER=FL+Stack /STK=11 /UG=Rn.6993 /LL=79121 /DEF=Rattus norvegicus ADP-ribosylation factor 6 (Arf6), mRNA. /PROD=ADP-ribosylation factor 6 /FL=gb:NM_024152.1 gb:L12385.1 NM_024152 ADP-ribosylation factor 6 Arf6 79121 NM_024152 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016358 // dendrite development // traceable author statement /// 0030036 // actin cytoskeleton organization // traceable author statement /// 0030838 // positive regulation of actin filament polymerization // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // not recorded /// 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation /// 0030866 // cortical actin cytoskeleton organization // not recorded /// 0031529 // ruffle organization // inferred from electronic annotation /// 0031529 // ruffle organization // not recorded /// 0035020 // regulation of Rac protein signal transduction // inferred from electronic annotation /// 0035020 // regulation of Rac protein signal transduction // not recorded 0001726 // ruffle // inferred from direct assay /// 0001726 // ruffle // not recorded /// 0001726 // ruffle // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0031996 // thioesterase binding // not recorded 1369999_a_at NM_053601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053601.1 /DB_XREF=gi:16758385 /GEN=Nnat /FEA=FLmRNA /CNT=15 /TID=Rn.5785.1 /TIER=FL+Stack /STK=11 /UG=Rn.5785 /LL=94270 /DEF=Rattus norvegicus neuronatin (Nnat), mRNA. /PROD=neuronatin /FL=gb:NM_053601.1 gb:U08290.1 NM_053601 neuronatin Nnat 94270 NM_053601 /// NM_181687 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from electronic annotation /// 0009749 // response to glucose stimulus // not recorded /// 0030182 // neuron differentiation // inferred from expression pattern /// 0032024 // positive regulation of insulin secretion // inferred from electronic annotation /// 0032024 // positive regulation of insulin secretion // not recorded /// 0032880 // regulation of protein localization // inferred from electronic annotation /// 0032880 // regulation of protein localization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1370000_at NM_021663 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021663.1 /DB_XREF=gi:11072105 /GEN=Nucb2 /FEA=FLmRNA /CNT=22 /TID=Rn.41602.1 /TIER=FL+Stack /STK=11 /UG=Rn.41602 /LL=59295 /DEF=Rattus norvegicus NEFA precursor (Nucb2), mRNA. /PROD=NEFA precursor /FL=gb:NM_021663.1 gb:AF238223.1 gb:AF250142.1 NM_021663 nucleobindin 2 Nucb2 59295 NM_021663 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005640 // nuclear outer membrane // inferred from electronic annotation /// 0005640 // nuclear outer membrane // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005793 // ER-Golgi intermediate compartment // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005797 // Golgi medial cisterna // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded 1370001_at NM_053998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053998.1 /DB_XREF=gi:16758907 /GEN=Mel /FEA=FLmRNA /CNT=16 /TID=Rn.16064.1 /TIER=FL+Stack /STK=11 /UG=Rn.16064 /LL=117103 /DEF=Rattus norvegicus mel transforming oncogene (derived from cell line NK14)- RAB8 homolog (Mel), mRNA. /PROD=mel transforming oncogene (derived from cellline NK14)- RAB8 homolog /FL=gb:NM_053998.1 gb:M83675.1 NM_053998 RAB8A, member RAS oncogene family Rab8a 117103 NM_053998 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0032880 // regulation of protein localization // inferred from mutant phenotype /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from direct assay /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from mutant phenotype /// 0051223 // regulation of protein transport // inferred from direct assay /// 0051223 // regulation of protein transport // inferred from mutant phenotype 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction 1370002_at NM_021694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021694.1 /DB_XREF=gi:11067426 /GEN=Lsc /FEA=FLmRNA /CNT=15 /TID=Rn.64481.1 /TIER=FL+Stack /STK=11 /UG=Rn.64481 /LL=60323 /DEF=Rattus norvegicus lsc protein (Lsc), mRNA. /PROD=lsc protein /FL=gb:AF314539.1 gb:NM_021694.1 NM_021694 Rho guanine nucleotide exchange factor (GEF) 1 Arhgef1 60323 NM_021694 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0050770 // regulation of axonogenesis // not recorded /// 0050771 // negative regulation of axonogenesis // not recorded /// 0050772 // positive regulation of axonogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // not recorded /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1370003_at NM_017245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017245.1 /DB_XREF=gi:8393295 /GEN=Eef2 /FEA=FLmRNA /CNT=78 /TID=Rn.55145.1 /TIER=FL+Stack /STK=10 /UG=Rn.55145 /LL=29565 /DEF=Rattus norvegicus eukaryotic translation elongation factor 2 (Eef2), mRNA. /PROD=eukaryotic translation elongation factor 2 /FL=gb:NM_017245.1 NM_017245 eukaryotic translation elongation factor 2 Eef2 29565 NM_017245 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0006414 // translational elongation // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // traceable author statement /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1370004_at M99065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M99065.1 /DB_XREF=gi:205275 /GEN=MacroH2A.1 /FEA=FLmRNA /CNT=37 /TID=Rn.11098.1 /TIER=FL+Stack /STK=10 /UG=Rn.11098 /LL=29384 /DEF=Rat core histone (MacroH2A.1) mRNA, complete cds. /PROD=histone H2A.1 /FL=gb:M99065.1 gb:NM_017182.1 gb:U79139.1 M99065 H2A histone family, member Y H2afy 29384 NM_017182 0006334 // nucleosome assembly // inferred from electronic annotation /// 0007549 // dosage compensation // inferred from electronic annotation /// 0007549 // dosage compensation // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation 0000786 // nucleosome // inferred from direct assay /// 0000786 // nucleosome // inferred from electronic annotation /// 0000793 // condensed chromosome // inferred from electronic annotation /// 0000793 // condensed chromosome // not recorded /// 0001740 // Barr body // inferred from electronic annotation /// 0001740 // Barr body // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded 1370005_at NM_030586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030586.1 /DB_XREF=gi:13399337 /GEN=omb5 /FEA=FLmRNA /CNT=22 /TID=Rn.10249.1 /TIER=FL+Stack /STK=10 /UG=Rn.10249 /LL=80773 /DEF=Rattus norvegicus cytochrome b5, outer mitochondrial membrane isoform (omb5), mRNA. /PROD=cytochrome b5, outer mitochondrial membraneisoform /FL=gb:NM_030586.1 NM_030586 cytochrome b5 type B (outer mitochondrial membrane) Cyb5b 80773 NM_030586 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0008047 // enzyme activator activity // inferred from direct assay /// 0020037 // heme binding // inferred from electronic annotation /// 0045153 // electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 1370006_at NM_019223 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019223.1 /DB_XREF=gi:9506912 /GEN=Ndufs6 /FEA=FLmRNA /CNT=18 /TID=Rn.6166.1 /TIER=FL+Stack /STK=10 /UG=Rn.6166 /LL=29478 /DEF=Rattus norvegicus NADH dehydrogenase Fe-S protein 6 (Ndufs6), mRNA. /PROD=NADH dehydrogenase Fe-S protein 6 /FL=gb:NM_019223.1 NM_019223 NADH dehydrogenase (ubiquinone) Fe-S protein 6 /// NADH dehydrogenase (ubiquinone) Fe-S protein 6 LOC679739 /// Ndufs6 29478 /// 679739 NM_019223 /// XM_001053017 /// XM_002725459 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 1370007_at NM_053849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053849.1 /DB_XREF=gi:16758711 /GEN=Erp70 /FEA=FLmRNA /CNT=19 /TID=Rn.4070.1 /TIER=FL+Stack /STK=10 /UG=Rn.4070 /LL=116598 /DEF=Rattus norvegicus protein disulfide isomerase related protein (calcium-binding protein, intestinal-related) (Erp70), mRNA. /PROD=protein disulfide isomerase related protein(calcium-binding protein, intestinal-related) /FL=gb:M86870.1 gb:NM_053849.1 NM_053849 protein disulfide isomerase family A, member 4 Pdia4 116598 NM_053849 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0003756 // protein disulfide isomerase activity // inferred from direct assay /// 0003756 // protein disulfide isomerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1370008_at NM_134458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134458.1 /DB_XREF=gi:19745175 /GEN=Gt198 /FEA=FLmRNA /CNT=17 /TID=Rn.16914.1 /TIER=FL+Stack /STK=10 /UG=Rn.16914 /DEF=Rattus norvegicus nuclear receptor coactivator GT198 (Gt198), mRNA. /PROD=nuclear receptor coactivator GT198 /FL=gb:AF352812.1 gb:NM_134458.1 NM_134458 PSMC3 interacting protein Psmc3ip 140938 NM_134458 0006310 // DNA recombination // inferred from electronic annotation /// 0007126 // meiosis // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0030331 // estrogen receptor binding // inferred from direct assay /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from direct assay /// 0035259 // glucocorticoid receptor binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from mutant phenotype /// 0046966 // thyroid hormone receptor binding // inferred from direct assay /// 0046983 // protein dimerization activity // traceable author statement /// 0050681 // androgen receptor binding // inferred from direct assay /// 0050692 // DBD domain binding // inferred from direct assay 1370009_at NM_012501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012501.1 /DB_XREF=gi:8392911 /GEN=Apoc3 /FEA=FLmRNA /CNT=17 /TID=Rn.36813.1 /TIER=FL+Stack /STK=10 /UG=Rn.36813 /LL=24207 /DEF=Rattus norvegicus Apolipoprotein C-III (Apoc3), mRNA. /PROD=apolipoprotein C-III /FL=gb:NM_012501.1 NM_012501 1370010_at NM_017068 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017068.1 /DB_XREF=gi:8393689 /GEN=Lamp2 /FEA=FLmRNA /CNT=18 /TID=Rn.1722.1 /TIER=FL+Stack /STK=10 /UG=Rn.1722 /LL=24944 /DEF=Rattus norvegicus Lysosomal-associated membrane protein 2 (Lamp2), mRNA. /PROD=lysosomal-associated membrane protein 2 /FL=gb:NM_017068.1 NM_017068 lysosomal-associated membrane protein 2 Lamp2 24944 NM_017068 0005624 // membrane fraction // not recorded /// 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005765 // lysosomal membrane // not recorded /// 0005768 // endosome // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // not recorded /// 0031088 // platelet dense granule membrane // not recorded 1370011_at NM_024349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024349.1 /DB_XREF=gi:13242234 /GEN=Ak1 /FEA=FLmRNA /CNT=18 /TID=Rn.21868.1 /TIER=FL+Stack /STK=10 /UG=Rn.21868 /LL=24183 /DEF=Rattus norvegicus Adenylate kinase 1 (Ak1), mRNA. /PROD=adenylate kinase 1 /FL=gb:AB022701.1 gb:NM_024349.1 NM_024349 adenylate kinase 1 Ak1 24183 NM_024349 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0014042 // positive regulation of neuron maturation // inferred from expression pattern /// 0032502 // developmental process // inferred from expression pattern /// 0046034 // ATP metabolic process // inferred from electronic annotation /// 0046083 // adenine metabolic process // non-traceable author statement /// 0046939 // nucleotide phosphorylation // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0043005 // neuron projection // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004017 // adenylate kinase activity // inferred from direct assay /// 0004017 // adenylate kinase activity // not recorded /// 0004017 // adenylate kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019205 // nucleobase, nucleoside, nucleotide kinase activity // inferred from electronic annotation 1370012_at NM_031557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031557.1 /DB_XREF=gi:13928751 /GEN=Ptgis /FEA=FLmRNA /CNT=15 /TID=Rn.10498.1 /TIER=FL+Stack /STK=10 /UG=Rn.10498 /LL=25527 /DEF=Rattus norvegicus Prostaglandin I2 (prostacyclin) synthase (Ptgis), mRNA. /PROD=prostaglandin I2 (prostacyclin) synthase /FL=gb:U53855.1 gb:NM_031557.1 NM_031557 prostaglandin I2 (prostacyclin) synthase Ptgis 25527 NM_031557 0001516 // prostaglandin biosynthetic process // inferred from direct assay /// 0001516 // prostaglandin biosynthetic process // traceable author statement /// 0001516 // prostaglandin biosynthetic process // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from mutant phenotype /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008116 // prostaglandin-I synthase activity // inferred from direct assay /// 0008116 // prostaglandin-I synthase activity // inferred from mutant phenotype /// 0008116 // prostaglandin-I synthase activity // not recorded /// 0008116 // prostaglandin-I synthase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370013_at NM_053497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053497.1 /DB_XREF=gi:16758253 /GEN=Cncg /FEA=FLmRNA /CNT=17 /TID=Rn.54534.1 /TIER=FL+Stack /STK=10 /UG=Rn.54534 /LL=85259 /DEF=Rattus norvegicus cyclic nucleotide-gated cation channel (Cncg), mRNA. /PROD=cyclic nucleotide-gated cation channel /FL=gb:U93851.1 gb:NM_053497.1 NM_053497 cyclic nucleotide gated channel alpha 1 Cnga1 85259 NM_053497 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0007601 // visual perception // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0001750 // photoreceptor outer segment // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0017071 // intracellular cyclic nucleotide activated cation channel complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005221 // intracellular cyclic nucleotide activated cation channel activity // traceable author statement /// 0030553 // cGMP binding // inferred from electronic annotation 1370014_at NM_031125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031125.1 /DB_XREF=gi:13592098 /GEN=Stx4a /FEA=FLmRNA /CNT=15 /TID=Rn.33218.1 /TIER=FL+Stack /STK=10 /UG=Rn.33218 /LL=81803 /DEF=Rattus norvegicus syntaxin 4 (Stx4a), mRNA. /PROD=syntaxin 4 /FL=gb:L20821.1 gb:NM_031125.1 NM_031125 syntaxin 4 Stx4 81803 NM_031125 0006461 // protein complex assembly // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0006944 // cellular membrane fusion // inferred from direct assay /// 0016044 // cellular membrane organization // not recorded /// 0016081 // synaptic vesicle docking involved in exocytosis // inferred from direct assay /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0046907 // intracellular transport // non-traceable author statement 0001950 // plasma membrane enriched fraction // inferred from electronic annotation /// 0001950 // plasma membrane enriched fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0031201 // SNARE complex // inferred from direct assay /// 0042383 // sarcolemma // inferred from direct assay /// 0042581 // specific granule // inferred from electronic annotation /// 0042581 // specific granule // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0000149 // SNARE binding // inferred from physical interaction /// 0000149 // SNARE binding // not recorded /// 0000149 // SNARE binding // inferred from electronic annotation /// 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from physical interaction /// 0030507 // spectrin binding // inferred from physical interaction 1370015_at NM_031814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031814.1 /DB_XREF=gi:13929157 /GEN=Git1 /FEA=FLmRNA /CNT=27 /TID=Rn.34521.1 /TIER=FL+Stack /STK=10 /UG=Rn.34521 /LL=83709 /DEF=Rattus norvegicus G protein-coupled receptor kinase-associated ADP ribosylation factor GTPase-activating protein (GIT1) (Git1), mRNA. /PROD=G protein-coupled receptor kinase-associated ADPribosylation factor GTPase-activating protein (GIT1) /FL=gb:AF085693.1 gb:NM_031814.1 NM_031814 G protein-coupled receptor kinase interacting ArfGAP 1 Git1 83709 NM_031814 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // traceable author statement 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008060 // ARF GTPase activator activity // inferred from direct assay /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0031267 // small GTPase binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1370016_at NM_031070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031070.1 /DB_XREF=gi:13592012 /GEN=Nell2 /FEA=FLmRNA /CNT=19 /TID=Rn.11567.1 /TIER=FL+Stack /STK=10 /UG=Rn.11567 /LL=81734 /DEF=Rattus norvegicus protein kinase C-binding protein NELL2 (Nell2), mRNA. /PROD=protein kinase C-binding protein NELL2 /FL=gb:AY089719.1 gb:NM_031070.1 gb:U48245.1 NM_031070 NEL-like 2 (chicken) Nell2 81734 NM_031070 0007155 // cell adhesion // inferred from electronic annotation /// 0040008 // regulation of growth // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1370017_at NM_012948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012948.1 /DB_XREF=gi:6978804 /GEN=Emd /FEA=FLmRNA /CNT=14 /TID=Rn.10968.1 /TIER=FL+Stack /STK=10 /UG=Rn.10968 /LL=25437 /DEF=Rattus norvegicus Emerin (Emd), mRNA. /PROD=emerin /FL=gb:NM_012948.1 NM_012948 emerin Emd 25437 NM_012948 0031468 // nuclear envelope reassembly // inferred from expression pattern /// 0035414 // negative regulation of catenin protein nuclear translocation // inferred from electronic annotation /// 0035414 // negative regulation of catenin protein nuclear translocation // not recorded /// 0046827 // positive regulation of protein export from nucleus // inferred from electronic annotation /// 0046827 // positive regulation of protein export from nucleus // not recorded /// 0048147 // negative regulation of fibroblast proliferation // inferred from electronic annotation /// 0048147 // negative regulation of fibroblast proliferation // not recorded /// 0060828 // regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060828 // regulation of canonical Wnt receptor signaling pathway // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay /// 0005635 // nuclear envelope // not recorded /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005640 // nuclear outer membrane // inferred from electronic annotation /// 0005640 // nuclear outer membrane // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005819 // spindle // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded /// 0031965 // nuclear membrane // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // not recorded 1370018_at NM_130431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130431.1 /DB_XREF=gi:18426863 /GEN=Hspb2 /FEA=FLmRNA /CNT=14 /TID=Rn.22486.1 /TIER=FL+Stack /STK=10 /UG=Rn.22486 /DEF=Rattus norvegicus heat shock 27kD protein 2 (Hspb2), mRNA. /PROD=heat shock 27kD protein 2 /FL=gb:NM_130431.1 NM_130431 heat shock protein beta 2 Hspb2 161476 NM_130431 0006950 // response to stress // inferred from electronic annotation /// 0007525 // somatic muscle development // inferred from electronic annotation /// 0007525 // somatic muscle development // not recorded /// 0009408 // response to heat // inferred from direct assay /// 0009408 // response to heat // inferred from electronic annotation 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370019_at AF394783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF394783.1 /DB_XREF=gi:15011461 /FEA=FLmRNA /CNT=25 /TID=Rn.1507.1 /TIER=FL+Stack /STK=9 /UG=Rn.1507 /LL=83783 /UG_GENE=Sult1a1 /DEF=Rattus norvegicus sulfotransferase SULT1A1 mRNA, complete cds. /PROD=sulfotransferase SULT1A1 /FL=gb:NM_031834.1 gb:L19998.1 gb:AF394783.1 AF394783 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1 Sult1a1 83783 NM_031834 0006584 // catecholamine metabolic process // inferred from direct assay /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006805 // xenobiotic metabolic process // inferred from direct assay /// 0006805 // xenobiotic metabolic process // not recorded /// 0006950 // response to stress // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008210 // estrogen metabolic process // inferred from mutant phenotype /// 0008217 // regulation of blood pressure // inferred from expression pattern /// 0009812 // flavonoid metabolic process // not recorded /// 0017144 // drug metabolic process // inferred from direct assay /// 0017144 // drug metabolic process // traceable author statement /// 0018960 // 4-nitrophenol metabolic process // inferred from direct assay /// 0042221 // response to chemical stimulus // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from mutant phenotype /// 0051923 // sulfation // inferred from direct assay /// 0051923 // sulfation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0000166 // nucleotide binding // not recorded /// 0004062 // aryl sulfotransferase activity // inferred from direct assay /// 0004062 // aryl sulfotransferase activity // inferred from electronic annotation /// 0008146 // sulfotransferase activity // inferred from direct assay /// 0008146 // sulfotransferase activity // not recorded /// 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0047894 // flavonol 3-sulfotransferase activity // not recorded /// 0050656 // 3'-phosphoadenosine 5'-phosphosulfate binding // inferred from direct assay 1370020_at NM_133418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133418.1 /DB_XREF=gi:19173787 /GEN=Slc25a10 /FEA=FLmRNA /CNT=18 /TID=Rn.3631.1 /TIER=FL+Stack /STK=9 /UG=Rn.3631 /LL=170943 /DEF=Rattus norvegicus solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10 (Slc25a10), mRNA. /PROD=solute carrier family 25 (mitochondrial carrier;dicarboxylate transporter), member 10 /FL=gb:NM_133418.1 NM_133418 solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10 Slc25a10 170943 NM_133418 0006810 // transport // inferred from electronic annotation /// 0006817 // phosphate transport // inferred from direct assay /// 0006839 // mitochondrial transport // inferred from electronic annotation /// 0008272 // sulfate transport // inferred from direct assay /// 0015709 // thiosulfate transport // inferred from direct assay /// 0015743 // malate transport // inferred from direct assay /// 0015744 // succinate transport // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055085 // transmembrane transport // not recorded 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005310 // dicarboxylic acid transmembrane transporter activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015114 // phosphate transmembrane transporter activity // inferred from direct assay /// 0015116 // sulfate transmembrane transporter activity // inferred from direct assay /// 0015117 // thiosulfate transmembrane transporter activity // inferred from direct assay /// 0015140 // malate transmembrane transporter activity // inferred from direct assay /// 0015141 // succinate transmembrane transporter activity // inferred from direct assay /// 0015291 // secondary active transmembrane transporter activity // not recorded /// 0015291 // secondary active transmembrane transporter activity // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from direct assay 1370021_at NM_033441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_033441.1 /DB_XREF=gi:15559212 /GEN=Rho /FEA=FLmRNA /CNT=23 /TID=Rn.10560.1 /TIER=FL+Stack /STK=9 /UG=Rn.10560 /LL=24717 /DEF=Rattus norvegicus Rhodopsin (retinitis pigmentosa 4, autosomal dominant) (Rho), mRNA. /PROD=rhodopsin (retinitis pigmentosa 4, autosomaldominant) /FL=gb:NM_033441.1 NM_033441 rhodopsin Rho 24717 NM_033441 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from sequence or structural similarity /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007601 // visual perception // inferred from electronic annotation /// 0007602 // phototransduction // inferred from electronic annotation /// 0007602 // phototransduction // not recorded /// 0007603 // phototransduction, visible light // inferred from direct assay /// 0009416 // response to light stimulus // not recorded /// 0009416 // response to light stimulus // inferred from electronic annotation /// 0009583 // detection of light stimulus // not recorded /// 0009583 // detection of light stimulus // inferred from electronic annotation /// 0009586 // rhodopsin mediated phototransduction // inferred from direct assay /// 0018298 // protein-chromophore linkage // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050953 // sensory perception of light stimulus // not recorded /// 0050953 // sensory perception of light stimulus // inferred from electronic annotation 0001750 // photoreceptor outer segment // not recorded /// 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0001917 // photoreceptor inner segment // not recorded /// 0001917 // photoreceptor inner segment // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042622 // photoreceptor outer segment membrane // not recorded /// 0042622 // photoreceptor outer segment membrane // inferred from sequence or structural similarity /// 0042622 // photoreceptor outer segment membrane // inferred from electronic annotation /// 0060342 // photoreceptor inner segment membrane // not recorded /// 0060342 // photoreceptor inner segment membrane // inferred from sequence or structural similarity /// 0060342 // photoreceptor inner segment membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0009881 // photoreceptor activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370022_at NM_017057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017057.1 /DB_XREF=gi:8394474 /GEN=Tnp2 /FEA=FLmRNA /CNT=14 /TID=Rn.10430.1 /TIER=FL+Stack /STK=9 /UG=Rn.10430 /LL=24840 /DEF=Rattus norvegicus Transition protein 2 (Tnp2), mRNA. /PROD=transition protein 2 /FL=gb:NM_017057.1 gb:U52958.1 NM_017057 transition protein 2 Tnp2 24840 NM_017057 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation /// 0007339 // binding of sperm to zona pellucida // not recorded /// 0007340 // acrosome reaction // inferred from electronic annotation /// 0007340 // acrosome reaction // not recorded /// 0007341 // penetration of zona pellucida // inferred from electronic annotation /// 0007341 // penetration of zona pellucida // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030317 // sperm motility // inferred from electronic annotation /// 0030317 // sperm motility // not recorded 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1370023_at NM_021654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021654.1 /DB_XREF=gi:11067368 /GEN=Gja4 /FEA=FLmRNA /CNT=16 /TID=Rn.23406.1 /TIER=FL+Stack /STK=9 /UG=Rn.23406 /LL=25655 /DEF=Rattus norvegicus Gap junction membrane channel, protein alpha 4 (connexin 37) (Gja4), mRNA. /PROD=gap junction membrane channel, protein alpha 4(connexin 37) /FL=gb:NM_021654.1 NM_021654 gap junction protein, alpha 4 Gja4 25655 NM_021654 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0006816 // calcium ion transport // inferred from mutant phenotype /// 0007154 // cell communication // traceable author statement /// 0007154 // cell communication // inferred from electronic annotation /// 0007267 // cell-cell signaling // inferred from mutant phenotype /// 0048265 // response to pain // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0005921 // gap junction // inferred from direct assay /// 0005921 // gap junction // traceable author statement /// 0005921 // gap junction // inferred from electronic annotation /// 0005922 // connexon complex // inferred from direct assay /// 0005922 // connexon complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 1370024_at NM_030832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030832.1 /DB_XREF=gi:13540629 /GEN=Fabp7 /FEA=FLmRNA /CNT=15 /TID=Rn.10014.1 /TIER=FL+Stack /STK=9 /UG=Rn.10014 /LL=80841 /DEF=Rattus norvegicus fatty acid binding protein 7, brain (Fabp7), mRNA. /PROD=brain lipid binding protein /FL=gb:NM_030832.1 gb:U02096.1 NM_030832 fatty acid binding protein 7, brain Fabp7 80841 NM_030832 0001964 // startle response // not recorded /// 0001964 // startle response // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0021846 // cell proliferation in forebrain // inferred from electronic annotation /// 0021846 // cell proliferation in forebrain // not recorded /// 0022008 // neurogenesis // inferred from electronic annotation /// 0022008 // neurogenesis // not recorded /// 0050673 // epithelial cell proliferation // inferred from mutant phenotype /// 0060134 // prepulse inhibition // inferred from electronic annotation /// 0060134 // prepulse inhibition // not recorded 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0042995 // cell projection // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005504 // fatty acid binding // traceable author statement /// 0008289 // lipid binding // inferred from electronic annotation 1370025_at NM_080480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080480.1 /DB_XREF=gi:17978456 /GEN=Pip5k2c /FEA=FLmRNA /CNT=14 /TID=Rn.7325.1 /TIER=FL+Stack /STK=9 /UG=Rn.7325 /LL=140607 /DEF=Rattus norvegicus phosphatidylinositol-4-phosphate 5-kinase, type II, gamma (Pip5k2c), mRNA. /PROD=phosphatidylinositol-4-phosphate 5-kinase, typeII, gamma /FL=gb:AF030558.1 gb:NM_080480.1 NM_080480 phosphatidylinositol-5-phosphate 4-kinase, type II, gamma Pip4k2c 140607 NM_080480 0006661 // phosphatidylinositol biosynthetic process // non-traceable author statement /// 0046488 // phosphatidylinositol metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016307 // phosphatidylinositol phosphate kinase activity // inferred from electronic annotation /// 0016308 // 1-phosphatidylinositol-4-phosphate 5-kinase activity // inferred from direct assay /// 0016309 // 1-phosphatidylinositol-5-phosphate 4-kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1370026_at NM_012935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012935.1 /DB_XREF=gi:16905066 /GEN=Cryab /FEA=FLmRNA /CNT=65 /TID=Rn.54554.1 /TIER=FL+Stack /STK=8 /UG=Rn.54554 /LL=25420 /DEF=Rattus norvegicus Crystallin, alpha polypeptide 2 (Cryab), mRNA. /PROD=crystallin, alpha polypeptide 2 /FL=gb:NM_012935.1 gb:M55534.1 NM_012935 crystallin, alpha B Cryab 25420 NM_012935 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0002088 // lens development in camera-type eye // inferred from electronic annotation /// 0002088 // lens development in camera-type eye // not recorded /// 0006006 // glucose metabolic process // inferred from mutant phenotype /// 0006457 // protein folding // inferred from direct assay /// 0006800 // oxygen and reactive oxygen species metabolic process // inferred from mutant phenotype /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0007021 // tubulin complex assembly // inferred from electronic annotation /// 0007021 // tubulin complex assembly // not recorded /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007517 // muscle organ development // not recorded /// 0007568 // aging // inferred from expression pattern /// 0009408 // response to heat // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // not recorded /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0031109 // microtubule polymerization or depolymerization // inferred from mutant phenotype /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032387 // negative regulation of intracellular transport // inferred from electronic annotation /// 0032387 // negative regulation of intracellular transport // not recorded /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // not recorded /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0043010 // camera-type eye development // not recorded /// 0043010 // camera-type eye development // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043154 // negative regulation of caspase activity // inferred from electronic annotation /// 0043154 // negative regulation of caspase activity // not recorded /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded /// 0051403 // stress-activated MAPK cascade // inferred from mutant phenotype /// 0060561 // apoptosis involved in morphogenesis // inferred from electronic annotation /// 0060561 // apoptosis involved in morphogenesis // not recorded 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005626 // insoluble fraction // inferred from electronic annotation /// 0005626 // insoluble fraction // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0030018 // Z disc // inferred from electronic annotation /// 0030018 // Z disc // not recorded /// 0031674 // I band // inferred from direct assay /// 0032432 // actin filament bundle // inferred from direct assay /// 0043292 // contractile fiber // inferred from electronic annotation /// 0043292 // contractile fiber // not recorded 0005212 // structural constituent of eye lens // traceable author statement /// 0005212 // structural constituent of eye lens // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from direct assay /// 0008092 // cytoskeletal protein binding // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // not recorded 1370027_a_at NM_023103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023103.1 /DB_XREF=gi:12831224 /GEN=Mug1 /FEA=FLmRNA /CNT=19 /TID=Rn.54491.1 /TIER=FL+Stack /STK=8 /UG=Rn.54491 /LL=65279 /DEF=Rattus norvegicus alpha(1)-inhibitor 3, variant I (Mug1), mRNA. /PROD=alpha(1)-inhibitor 3, variant I /FL=gb:NM_023103.1 NM_023103 alpha-1-inhibitor III /// murinoglobulin 1 A1i3 /// Mug1 297568 /// 497794 NM_001037975 /// NM_023103 0006953 // acute-phase response // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0004866 // endopeptidase inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // traceable author statement /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1370028_at AA926148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926148 /DB_XREF=gi:4237339 /DB_XREF=UI-R-A1-eq-h-03-0-UI.s1 /CLONE=UI-R-A1-eq-h-03-0-UI /FEA=FLmRNA /CNT=20 /TID=Rn.10149.1 /TIER=ConsEnd /STK=1 /UG=Rn.10149 /LL=24310 /UG_GENE=Ace /UG_TITLE=Angiotensin I-converting enzyme (Dipeptidyl carboxypeptidase 1) /FL=gb:U03708.1 gb:AF201332.1 gb:AF201331.1 gb:NM_012544.1 gb:U03734.1 AA926148 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 Ace 24310 NM_012544 0001666 // response to hypoxia // inferred from expression pattern /// 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0002446 // neutrophil mediated immunity // inferred from electronic annotation /// 0002446 // neutrophil mediated immunity // not recorded /// 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006518 // peptide metabolic process // inferred from mutant phenotype /// 0008217 // regulation of blood pressure // inferred from direct assay /// 0008217 // regulation of blood pressure // traceable author statement /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0014910 // regulation of smooth muscle cell migration // inferred from direct assay /// 0019233 // sensory perception of pain // inferred from mutant phenotype /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from mutant phenotype /// 0042310 // vasoconstriction // inferred from mutant phenotype /// 0042447 // hormone catabolic process // inferred from electronic annotation /// 0042447 // hormone catabolic process // not recorded /// 0042755 // eating behavior // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043171 // peptide catabolic process // inferred from electronic annotation /// 0043171 // peptide catabolic process // not recorded /// 0050482 // arachidonic acid secretion // inferred from electronic annotation /// 0050482 // arachidonic acid secretion // not recorded /// 0050729 // positive regulation of inflammatory response // inferred from mutant phenotype /// 0050769 // positive regulation of neurogenesis // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008144 // drug binding // inferred from electronic annotation /// 0008144 // drug binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from direct assay /// 0008237 // metallopeptidase activity // not recorded /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008241 // peptidyl-dipeptidase activity // inferred from direct assay /// 0008241 // peptidyl-dipeptidase activity // not recorded /// 0008241 // peptidyl-dipeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0031404 // chloride ion binding // inferred from electronic annotation /// 0031404 // chloride ion binding // not recorded /// 0031711 // bradykinin receptor binding // inferred from electronic annotation /// 0031711 // bradykinin receptor binding // not recorded /// 0042277 // peptide binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1370029_at NM_019201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019201.2 /DB_XREF=gi:15011858 /GEN=Ctbp1 /FEA=FLmRNA /CNT=18 /TID=Rn.3946.1 /TIER=FL+Stack /STK=8 /UG=Rn.3946 /LL=29382 /DEF=Rattus norvegicus C-terminal binding protein 1 (Ctbp1), mRNA. /PROD=C-terminal binding protein 1 /FL=gb:NM_019201.2 gb:AF067795.2 NM_019201 C-terminal binding protein 1 Ctbp1 29382 NM_019201 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006944 // cellular membrane fusion // traceable author statement /// 0007030 // Golgi organization // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0050872 // white fat cell differentiation // not recorded /// 0050872 // white fat cell differentiation // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0017053 // transcriptional repressor complex // not recorded /// 0017053 // transcriptional repressor complex // inferred from sequence or structural similarity 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003714 // transcription corepressor activity // traceable author statement /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0008415 // acyltransferase activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0048037 // cofactor binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from direct assay /// 0051287 // NAD or NADH binding // inferred from electronic annotation 1370030_at NM_017305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017305.1 /DB_XREF=gi:8393445 /GEN=Gclm /FEA=FLmRNA /CNT=18 /TID=Rn.2460.1 /TIER=FL+Stack /STK=8 /UG=Rn.2460 /LL=29739 /DEF=Rattus norvegicus glutamate-cysteine ligase , modifier subunit (Gclm), mRNA. /PROD=glutamate-cysteine ligase , modifier subunit /FL=gb:L22191.1 gb:NM_017305.1 NM_017305 glutamate cysteine ligase, modifier subunit Gclm 29739 NM_017305 0006534 // cysteine metabolic process // inferred from electronic annotation /// 0006534 // cysteine metabolic process // not recorded /// 0006536 // glutamate metabolic process // not recorded /// 0006536 // glutamate metabolic process // inferred from sequence or structural similarity /// 0006536 // glutamate metabolic process // inferred from electronic annotation /// 0006749 // glutathione metabolic process // not recorded /// 0006749 // glutathione metabolic process // inferred from electronic annotation /// 0006750 // glutathione biosynthetic process // inferred from mutant phenotype /// 0006750 // glutathione biosynthetic process // not recorded /// 0006750 // glutathione biosynthetic process // inferred from sequence or structural similarity /// 0006750 // glutathione biosynthetic process // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from mutant phenotype /// 0006979 // response to oxidative stress // not recorded /// 0006979 // response to oxidative stress // inferred from sequence or structural similarity /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0035229 // positive regulation of glutamate-cysteine ligase activity // inferred from direct assay /// 0035229 // positive regulation of glutamate-cysteine ligase activity // not recorded /// 0035229 // positive regulation of glutamate-cysteine ligase activity // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0042493 // response to drug // inferred from sequence or structural similarity /// 0042493 // response to drug // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // inferred from mutant phenotype /// 0050880 // regulation of blood vessel size // not recorded /// 0050880 // regulation of blood vessel size // inferred from sequence or structural similarity /// 0050880 // regulation of blood vessel size // inferred from electronic annotation /// 0051409 // response to nitrosative stress // inferred from mutant phenotype /// 0051900 // regulation of mitochondrial depolarization // inferred from electronic annotation /// 0051900 // regulation of mitochondrial depolarization // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // not recorded /// 0005625 // soluble fraction // inferred from sequence or structural similarity /// 0005625 // soluble fraction // inferred from electronic annotation /// 0017109 // glutamate-cysteine ligase complex // inferred from direct assay /// 0017109 // glutamate-cysteine ligase complex // not recorded /// 0017109 // glutamate-cysteine ligase complex // inferred from electronic annotation 0004357 // glutamate-cysteine ligase activity // inferred from direct assay /// 0004357 // glutamate-cysteine ligase activity // inferred from mutant phenotype /// 0004357 // glutamate-cysteine ligase activity // not recorded /// 0004357 // glutamate-cysteine ligase activity // inferred from sequence or structural similarity /// 0004357 // glutamate-cysteine ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0035226 // glutamate-cysteine ligase catalytic subunit binding // inferred from direct assay /// 0035226 // glutamate-cysteine ligase catalytic subunit binding // not recorded /// 0035226 // glutamate-cysteine ligase catalytic subunit binding // inferred from sequence or structural similarity /// 0035226 // glutamate-cysteine ligase catalytic subunit binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 1370031_at NM_031685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031685.1 /DB_XREF=gi:13928949 /GEN=Gosr2 /FEA=FLmRNA /CNT=17 /TID=Rn.10734.1 /TIER=FL+Stack /STK=8 /UG=Rn.10734 /LL=64154 /DEF=Rattus norvegicus golgi SNAP receptor complex member 2 (Gosr2), mRNA. /PROD=golgi SNAP receptor complex member 2 /FL=gb:U91539.1 gb:AF007549.1 gb:NM_031685.1 NM_031685 golgi SNAP receptor complex member 2 Gosr2 64154 NM_031685 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0000139 // Golgi membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1370032_at AI577532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577532 /DB_XREF=gi:4561908 /DB_XREF=UI-R-Y0-vj-h-08-0-UI.s1 /CLONE=UI-R-Y0-vj-h-08-0-UI /FEA=FLmRNA /CNT=33 /TID=Rn.35142.1 /TIER=Stack /STK=7 /UG=Rn.35142 /LL=59114 /UG_GENE=LOC59114 /UG_TITLE=ERM-binding phosphoprotein /FL=gb:AF154336.1 gb:NM_021594.1 AI577532 solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1 Slc9a3r1 59114 NM_021594 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030643 // cellular phosphate ion homeostasis // inferred from electronic annotation /// 0030643 // cellular phosphate ion homeostasis // not recorded 0001726 // ruffle // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005902 // microvillus // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0030175 // filopodium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0045177 // apical part of cell // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // not recorded /// 0031698 // beta-2 adrenergic receptor binding // inferred from electronic annotation /// 0031698 // beta-2 adrenergic receptor binding // not recorded 1370033_at NM_020104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020104.1 /DB_XREF=gi:13487932 /GEN=Mlc3 /FEA=FLmRNA /CNT=18 /TID=Rn.40120.1 /TIER=FL+Stack /STK=8 /UG=Rn.40120 /LL=56781 /DEF=Rattus norvegicus fast myosin alkali light chain (Mlc3), mRNA. /PROD=fast myosin alkali light chain /FL=gb:NM_020104.1 NM_020104 myosin, light polypeptide 1 Myl1 56781 NM_001077656 /// NM_020104 0006936 // muscle contraction // inferred from electronic annotation /// 0060048 // cardiac muscle contraction // inferred from mutant phenotype 0016459 // myosin complex // inferred from electronic annotation /// 0030016 // myofibril // inferred from electronic annotation /// 0043292 // contractile fiber // inferred from direct assay 0003774 // motor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1370034_at NM_133572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133572.1 /DB_XREF=gi:19424259 /GEN=Cdc25b /FEA=FLmRNA /CNT=31 /TID=Rn.11312.1 /TIER=FL+Stack /STK=8 /UG=Rn.11312 /LL=171103 /DEF=Rattus norvegicus cell division cycle 25B (Cdc25b), mRNA. /PROD=cell division cycle 25B /FL=gb:NM_133572.1 gb:D16237.1 NM_133572 cell division cycle 25 homolog B (S. pombe) Cdc25b 171103 NM_133572 0000087 // M phase of mitotic cell cycle // inferred from electronic annotation /// 0001556 // oocyte maturation // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from expression pattern /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007144 // female meiosis I // not recorded /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0051301 // cell division // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // not recorded /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from expression pattern 1370035_at NM_031515 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031515.1 /DB_XREF=gi:13928697 /GEN=Kras2 /FEA=FLmRNA /CNT=20 /TID=Rn.24554.1 /TIER=FL+Stack /STK=8 /UG=Rn.24554 /LL=24525 /DEF=Rattus norvegicus Kirsten rat sarcoma viral oncogene homologue 2 (active) (Kras2), mRNA. /PROD=kirsten rat sarcoma viral oncogene homologue 2(active) /FL=gb:U09793.1 gb:NM_031515.1 NM_031515 v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog Kras 24525 NM_031515 0006184 // GTP catabolic process // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008542 // visual learning // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from mutant phenotype /// 0030036 // actin cytoskeleton organization // not recorded /// 0032228 // regulation of synaptic transmission, GABAergic // not recorded /// 0035022 // positive regulation of Rac protein signal transduction // not recorded /// 0035176 // social behavior // inferred from expression pattern /// 0043406 // positive regulation of MAP kinase activity // inferred from mutant phenotype /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0048169 // regulation of long-term neuronal synaptic plasticity // not recorded /// 0051000 // positive regulation of nitric-oxide synthase activity // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0051146 // striated muscle cell differentiation // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051385 // response to mineralocorticoid stimulus // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0019002 // GMP binding // inferred from direct assay /// 0019003 // GDP binding // inferred from direct assay /// 0030275 // LRR domain binding // inferred from direct assay 1370036_at NM_031127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031127.1 /DB_XREF=gi:13592102 /GEN=Suox /FEA=FLmRNA /CNT=12 /TID=Rn.25720.1 /TIER=FL+Stack /STK=8 /UG=Rn.25720 /LL=81805 /DEF=Rattus norvegicus sulfite oxidase (Suox), mRNA. /PROD=sulfite oxidase /FL=gb:NM_031127.1 gb:L05084.1 NM_031127 sulfite oxidase Suox 81805 NM_031127 0007584 // response to nutrient // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005758 // mitochondrial intermembrane space // inferred from direct assay /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0008482 // sulfite oxidase activity // inferred from direct assay /// 0008482 // sulfite oxidase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from direct assay /// 0020037 // heme binding // inferred from electronic annotation /// 0030151 // molybdenum ion binding // inferred from electronic annotation /// 0043546 // molybdopterin cofactor binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1370037_at NM_031826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031826.1 /DB_XREF=gi:13929179 /GEN=Fbn2 /FEA=FLmRNA /CNT=11 /TID=Rn.22906.1 /TIER=FL+Stack /STK=8 /UG=Rn.22906 /LL=83728 /DEF=Rattus norvegicus fibrillin-2 (Fbn2), mRNA. /PROD=fibrillin-2 /FL=gb:NM_031826.1 gb:AF135060.1 NM_031826 fibrillin 2 Fbn2 689008 NM_031826 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1370038_at NM_023952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023952.1 /DB_XREF=gi:13027395 /GEN=Rfrp /FEA=FLmRNA /CNT=11 /TID=Rn.62354.1 /TIER=FL+Stack /STK=8 /UG=Rn.62354 /LL=60570 /DEF=Rattus norvegicus RFamide related peptide (Rfrp), mRNA. /PROD=RFamide related peptide /FL=gb:NM_023952.1 gb:AF330059.2 gb:AB040288.1 NM_023952 neuropeptide VF precursor Npvf 60570 NM_023952 0007218 // neuropeptide signaling pathway // inferred from mutant phenotype /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0019233 // sensory perception of pain // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation 0005102 // receptor binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1370039_at NM_012873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012873.1 /DB_XREF=gi:6981407 /GEN=Prm2 /FEA=FLmRNA /CNT=11 /TID=Rn.10404.1 /TIER=FL+Stack /STK=8 /UG=Rn.10404 /LL=25345 /DEF=Rattus norvegicus Protamine 2 (Prm2), mRNA. /PROD=protamine 2 /FL=gb:NM_012873.1 NM_012873 protamine 2 Prm2 25345 NM_012873 0006997 // nucleus organization // inferred from electronic annotation /// 0006997 // nucleus organization // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007286 // spermatid development // inferred from electronic annotation /// 0007286 // spermatid development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030261 // chromosome condensation // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation 1370040_at NM_030870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030870.1 /DB_XREF=gi:13540700 /GEN=Ogg1 /FEA=FLmRNA /CNT=10 /TID=Rn.22623.1 /TIER=FL+Stack /STK=8 /UG=Rn.22623 /LL=81528 /DEF=Rattus norvegicus 8-oxoguanine-DNA-glycosylase (Ogg1), mRNA. /PROD=8-oxoguanine-DNA-glycosylase /FL=gb:NM_030870.1 gb:AF029690.1 NM_030870 8-oxoguanine DNA glycosylase Ogg1 81528 NM_030870 0002526 // acute inflammatory response // inferred from expression pattern /// 0006281 // DNA repair // not recorded /// 0006281 // DNA repair // traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006284 // base-excision repair // inferred from direct assay /// 0006284 // base-excision repair // inferred from electronic annotation /// 0006284 // base-excision repair // not recorded /// 0006289 // nucleotide-excision repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0045007 // depurination // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0051593 // response to folic acid // inferred from expression pattern /// 0071276 // cellular response to cadmium ion // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from direct assay /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003906 // DNA-(apurinic or apyrimidinic site) lyase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0008534 // oxidized purine base lesion DNA N-glycosylase activity // inferred from direct assay /// 0008534 // oxidized purine base lesion DNA N-glycosylase activity // not recorded /// 0008534 // oxidized purine base lesion DNA N-glycosylase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0019104 // DNA N-glycosylase activity // inferred from direct assay /// 0034039 // 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity // inferred from electronic annotation /// 0034039 // 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity // not recorded 1370041_at NM_053440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053440.1 /DB_XREF=gi:16758183 /GEN=Scgn10 /FEA=FLmRNA /CNT=59 /TID=Rn.34335.1 /TIER=FL+Stack /STK=7 /UG=Rn.34335 /LL=84510 /DEF=Rattus norvegicus superiorcervical ganglia, neural specific 10 (Scgn10), mRNA. /PROD=superiorcervical ganglia, neural specific 10 /FL=gb:AF306458.1 gb:NM_053440.1 NM_053440 stathmin-like 2 Stmn2 84510 NM_053440 0007026 // negative regulation of microtubule depolymerization // not recorded /// 0010976 // positive regulation of neuron projection development // not recorded /// 0010977 // negative regulation of neuron projection development // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0031115 // negative regulation of microtubule polymerization // not recorded /// 0031117 // positive regulation of microtubule depolymerization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030426 // growth cone // inferred from direct assay /// 0030426 // growth cone // not recorded /// 0030426 // growth cone // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1370042_at BG668493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668493 /DB_XREF=gi:13890415 /DB_XREF=DRACOD02 /CLONE=DRACOD02 /FEA=FLmRNA /CNT=59 /TID=Rn.34335.1 /TIER=Stack /STK=7 /UG=Rn.34335 /LL=84510 /UG_GENE=Scgn10 /UG_TITLE=superiorcervical ganglia, neural specific 10 /FL=gb:AF306458.1 gb:NM_053440.1 BG668493 stathmin-like 2 Stmn2 84510 NM_053440 0007026 // negative regulation of microtubule depolymerization // not recorded /// 0010976 // positive regulation of neuron projection development // not recorded /// 0010977 // negative regulation of neuron projection development // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0031115 // negative regulation of microtubule polymerization // not recorded /// 0031117 // positive regulation of microtubule depolymerization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030426 // growth cone // inferred from direct assay /// 0030426 // growth cone // not recorded /// 0030426 // growth cone // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1370043_at NM_031753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031753.1 /DB_XREF=gi:13929057 /GEN=Alcam /FEA=FLmRNA /CNT=19 /TID=Rn.5789.1 /TIER=FL+Stack /STK=7 /UG=Rn.5789 /LL=79559 /DEF=Rattus norvegicus activated leukocyte cell adhesion molecule (Alcam), mRNA. /PROD=activated leukocyte cell adhesion molecule /FL=gb:NM_031753.1 gb:AB008538.1 NM_031753 activated leukocyte cell adhesion molecule Alcam 79559 NM_031753 0007155 // cell adhesion // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0008045 // motor axon guidance // inferred from electronic annotation /// 0008045 // motor axon guidance // not recorded 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370044_at NM_080895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080895.1 /DB_XREF=gi:18266697 /GEN=Faim /FEA=FLmRNA /CNT=25 /TID=Rn.22800.1 /TIER=FL+Stack /STK=7 /UG=Rn.22800 /DEF=Rattus norvegicus Fas apoptotic inhibitory molecule (Faim), mRNA. /PROD=Fas apoptotic inhibitory molecule /FL=gb:AF467453.1 gb:AF412334.1 gb:NM_080895.1 NM_080895 Fas apoptotic inhibitory molecule Faim 140930 NM_080895 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0007249 // I-kappaB kinase/NF-kappaB cascade // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0050769 // positive regulation of neurogenesis // inferred from mutant phenotype 1370045_at NM_053528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053528.1 /DB_XREF=gi:16758291 /GEN=Polg /FEA=FLmRNA /CNT=34 /TID=Rn.19327.1 /TIER=FL+Stack /STK=7 /UG=Rn.19327 /LL=85472 /DEF=Rattus norvegicus DNA polymerase gamma (Polg), mRNA. /PROD=DNA polymerase gamma /FL=gb:NM_053528.1 NM_053528 polymerase (DNA directed), gamma Polg 85472 NM_053528 0006260 // DNA replication // inferred from electronic annotation /// 0006261 // DNA-dependent DNA replication // inferred from electronic annotation /// 0006264 // mitochondrial DNA replication // inferred from electronic annotation /// 0006264 // mitochondrial DNA replication // not recorded /// 0006287 // base-excision repair, gap-filling // inferred from electronic annotation /// 0006287 // base-excision repair, gap-filling // not recorded /// 0007568 // aging // inferred from electronic annotation /// 0007568 // aging // not recorded /// 0008152 // metabolic process // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005760 // gamma DNA polymerase complex // inferred from direct assay /// 0005760 // gamma DNA polymerase complex // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded 0002020 // protease binding // inferred from electronic annotation /// 0002020 // protease binding // not recorded /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inferred from direct assay /// 0003887 // DNA-directed DNA polymerase activity // not recorded /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1370046_at AW435444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435444 /DB_XREF=gi:6966751 /DB_XREF=UI-R-BJ0p-afu-e-09-0-UI.s1 /CLONE=UI-R-BJ0p-afu-e-09-0-UI /FEA=FLmRNA /CNT=34 /TID=Rn.19327.1 /TIER=Stack /STK=10 /UG=Rn.19327 /LL=85472 /UG_GENE=Polg /UG_TITLE=DNA polymerase gamma /FL=gb:NM_053528.1 AW435444 1370047_at NM_053535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053535.1 /DB_XREF=gi:16758299 /GEN=Pc1 /FEA=FLmRNA /CNT=16 /TID=Rn.1199.1 /TIER=FL+Stack /STK=7 /UG=Rn.1199 /LL=85496 /DEF=Rattus norvegicus ectonucleotide pyrophosphatasephosphodiesterase 1 (Pc1), mRNA. /PROD=ectonucleotide pyrophosphatasephosphodiesterase1 /FL=gb:AF340186.1 gb:AF340185.1 gb:AF320054.1 gb:NM_053535.1 NM_053535 ectonucleotide pyrophosphatase/phosphodiesterase 1 Enpp1 85496 NM_053535 0006091 // generation of precursor metabolites and energy // inferred from electronic annotation /// 0006091 // generation of precursor metabolites and energy // not recorded /// 0006796 // phosphate metabolic process // inferred from electronic annotation /// 0006796 // phosphate metabolic process // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009143 // nucleoside triphosphate catabolic process // inferred from electronic annotation /// 0009143 // nucleoside triphosphate catabolic process // not recorded /// 0030279 // negative regulation of ossification // inferred from electronic annotation /// 0030279 // negative regulation of ossification // not recorded /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0030505 // inorganic diphosphate transport // inferred from electronic annotation /// 0030505 // inorganic diphosphate transport // not recorded /// 0030643 // cellular phosphate ion homeostasis // inferred from electronic annotation /// 0030643 // cellular phosphate ion homeostasis // not recorded /// 0030730 // sequestering of triglyceride // inferred from electronic annotation /// 0030730 // sequestering of triglyceride // not recorded /// 0031214 // biomineral tissue development // inferred from electronic annotation /// 0031953 // negative regulation of protein autophosphorylation // inferred from electronic annotation /// 0031953 // negative regulation of protein autophosphorylation // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // not recorded /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // not recorded /// 0045719 // negative regulation of glycogen biosynthetic process // inferred from electronic annotation /// 0045719 // negative regulation of glycogen biosynthetic process // not recorded /// 0046325 // negative regulation of glucose import // inferred from electronic annotation /// 0046325 // negative regulation of glucose import // not recorded /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from electronic annotation /// 0046627 // negative regulation of insulin receptor signaling pathway // not recorded /// 0046849 // bone remodeling // inferred from electronic annotation /// 0046849 // bone remodeling // not recorded /// 0050427 // 3'-phosphoadenosine 5'-phosphosulfate metabolic process // inferred from electronic annotation /// 0050427 // 3'-phosphoadenosine 5'-phosphosulfate metabolic process // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004528 // phosphodiesterase I activity // inferred from electronic annotation /// 0004551 // nucleotide diphosphatase activity // inferred from electronic annotation /// 0004551 // nucleotide diphosphatase activity // not recorded /// 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0005158 // insulin receptor binding // inferred from electronic annotation /// 0005158 // insulin receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030247 // polysaccharide binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047429 // nucleoside-triphosphate diphosphatase activity // inferred from electronic annotation /// 0047429 // nucleoside-triphosphate diphosphatase activity // not recorded 1370048_at NM_053936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053936.1 /DB_XREF=gi:16758815 /GEN=Edg2 /FEA=FLmRNA /CNT=18 /TID=Rn.11200.1 /TIER=FL+Stack /STK=7 /UG=Rn.11200 /LL=116744 /DEF=Rattus norvegicus endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 2 (Edg2), mRNA. /PROD=endothelial differentiation, lysophosphatidicacid G-protein-coupled receptor, 2 /FL=gb:AF090347.1 gb:NM_053936.1 gb:AF014418.1 NM_053936 lysophosphatidic acid receptor 1 Lpar1 116744 NM_053936 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0010942 // positive regulation of cell death // inferred from mutant phenotype /// 0010977 // negative regulation of neuron projection development // inferred from mutant phenotype /// 0022008 // neurogenesis // inferred from expression pattern /// 0032060 // bleb assembly // inferred from electronic annotation /// 0032060 // bleb assembly // not recorded /// 0035025 // positive regulation of Rho protein signal transduction // inferred from electronic annotation /// 0035025 // positive regulation of Rho protein signal transduction // not recorded /// 0042552 // myelination // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // inferred from direct assay /// 0060999 // positive regulation of dendritic spine development // inferred from direct assay /// 0071453 // cellular response to oxygen levels // inferred from expression pattern /// 0071673 // positive regulation of smooth muscle cell chemotaxis // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // not recorded /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay 0001619 // lysosphingolipid and lysophosphatidic acid receptor activity // inferred from direct assay /// 0001619 // lysosphingolipid and lysophosphatidic acid receptor activity // inferred from mutant phenotype /// 0001619 // lysosphingolipid and lysophosphatidic acid receptor activity // not recorded /// 0001619 // lysosphingolipid and lysophosphatidic acid receptor activity // inferred from electronic annotation /// 0001965 // G-protein alpha-subunit binding // inferred from mutant phenotype /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005543 // phospholipid binding // inferred from direct assay /// 0005543 // phospholipid binding // inferred from mutant phenotype /// 0030165 // PDZ domain binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // not recorded 1370049_at NM_031360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031360.1 /DB_XREF=gi:14389300 /GEN=Smpd2 /FEA=FLmRNA /CNT=13 /TID=Rn.18572.1 /TIER=FL+Stack /STK=7 /UG=Rn.18572 /LL=83537 /DEF=Rattus norvegicus neutral sphingomyelinase (Smpd2), mRNA. /PROD=neutral sphingomyelinase /FL=gb:NM_031360.1 gb:AB047002.1 NM_031360 sphingomyelin phosphodiesterase 2, neutral Smpd2 83537 NM_031360 0007243 // intracellular protein kinase cascade // inferred from mutant phenotype /// 0008152 // metabolic process // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0009612 // response to mechanical stimulus // inferred from mutant phenotype /// 0046513 // ceramide biosynthetic process // inferred from direct assay 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004767 // sphingomyelin phosphodiesterase activity // not recorded /// 0004767 // sphingomyelin phosphodiesterase activity // inferred from direct assay /// 0004767 // sphingomyelin phosphodiesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370050_at NM_053311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053311.1 /DB_XREF=gi:16758007 /GEN=Atp2b1 /FEA=FLmRNA /CNT=22 /TID=Rn.7208.1 /TIER=FL+Stack /STK=7 /UG=Rn.7208 /LL=29598 /DEF=Rattus norvegicus ATPase, Ca++ transporting, plasma membrane 1 (Atp2b1), mRNA. /PROD=ATPase, Ca++ transporting, plasma membrane 1 /FL=gb:NM_053311.1 gb:J03753.1 NM_053311 ATPase, Ca++ transporting, plasma membrane 1 Atp2b1 29598 NM_053311 0003407 // neural retina development // inferred from expression pattern /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0009409 // response to cold // inferred from expression pattern /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0070588 // calcium ion transmembrane transport // inferred from mutant phenotype /// 0071305 // cellular response to vitamin D // inferred from expression pattern /// 0071386 // cellular response to corticosterone stimulus // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045177 // apical part of cell // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015085 // calcium ion transmembrane transporter activity // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1370051_at NM_031659 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031659.1 /DB_XREF=gi:13928911 /GEN=Tgm1 /FEA=FLmRNA /CNT=13 /TID=Rn.10039.1 /TIER=FL+Stack /STK=7 /UG=Rn.10039 /LL=60335 /DEF=Rattus norvegicus transglutaminase 1, K polypeptide (Tgm1), mRNA. /PROD=transglutaminase type 1 /FL=gb:M57263.1 gb:NM_031659.1 NM_031659 transglutaminase 1, K polypeptide Tgm1 60335 NM_031659 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0018149 // peptide cross-linking // inferred from electronic annotation /// 0018149 // peptide cross-linking // non-traceable author statement /// 0030216 // keratinocyte differentiation // not recorded /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0031424 // keratinization // inferred from electronic annotation 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031224 // intrinsic to membrane // inferred from electronic annotation /// 0031224 // intrinsic to membrane // not recorded 0003810 // protein-glutamine gamma-glutamyltransferase activity // inferred from electronic annotation /// 0003810 // protein-glutamine gamma-glutamyltransferase activity // not recorded /// 0003810 // protein-glutamine gamma-glutamyltransferase activity // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370052_at NM_031081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031081.1 /DB_XREF=gi:13592022 /GEN=Pdpk1 /FEA=FLmRNA /CNT=13 /TID=Rn.10905.1 /TIER=FL+Stack /STK=7 /UG=Rn.10905 /LL=81745 /DEF=Rattus norvegicus 3-phosphoinositide dependent protein kinase-1 (Pdpk1), mRNA. /PROD=3-phosphoinositide dependent protein kinase-1 /FL=gb:NM_031081.1 NM_031081 3-phosphoinositide dependent protein kinase-1 Pdpk1 81745 NM_031081 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006972 // hyperosmotic response // inferred from electronic annotation /// 0006972 // hyperosmotic response // not recorded /// 0016310 // phosphorylation // not recorded /// 0018107 // peptidyl-threonine phosphorylation // not recorded /// 0023034 // intracellular signaling pathway // not recorded /// 0032148 // activation of protein kinase B activity // not recorded /// 0032869 // cellular response to insulin stimulus // not recorded /// 0048041 // focal adhesion assembly // inferred from mutant phenotype /// 0090004 // positive regulation of establishment of protein localization in plasma membrane // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004676 // 3-phosphoinositide-dependent protein kinase activity // not recorded /// 0004676 // 3-phosphoinositide-dependent protein kinase activity // inferred from direct assay /// 0004676 // 3-phosphoinositide-dependent protein kinase activity // inferred from electronic annotation /// 0005158 // insulin receptor binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from direct assay 1370053_at BE116953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116953 /DB_XREF=gi:8509023 /DB_XREF=UI-R-BS1-azg-g-04-0-UI.s1 /CLONE=UI-R-BS1-azg-g-04-0-UI /FEA=FLmRNA /CNT=15 /TID=Rn.37481.1 /TIER=ConsEnd /STK=2 /UG=Rn.37481 /LL=65040 /UG_GENE=Dlgap1 /UG_TITLE=guanylate kinase associated protein /FL=gb:U67137.1 gb:NM_022946.2 BE116953 Discs, large (Drosophila) homolog-associated protein 1 Dlgap1 65040 NM_022946 0007267 // cell-cell signaling // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from direct assay 1370054_at NM_131902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_131902.1 /DB_XREF=gi:18777723 /GEN=Cdkn2c /FEA=FLmRNA /CNT=13 /TID=Rn.20242.1 /TIER=FL+Stack /STK=7 /UG=Rn.20242 /DEF=Rattus norvegicus Cyclin dependent kinase inhibitor 2C(p18, inhibits CDK4), see also D5Lev19 (Cdkn2c), mRNA. /PROD=Cyclin dependent kinase inhibitor 2C(p18,inhibits CDK4), see also D5Lev19 /FL=gb:NM_131902.1 gb:AF474980.1 NM_131902 cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) Cdkn2c 54238 NM_131902 0000079 // regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0000079 // regulation of cyclin-dependent protein kinase activity // not recorded /// 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0042326 // negative regulation of phosphorylation // inferred from electronic annotation /// 0042326 // negative regulation of phosphorylation // not recorded /// 0048709 // oligodendrocyte differentiation // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004861 // cyclin-dependent protein kinase inhibitor activity // not recorded /// 0004861 // cyclin-dependent protein kinase inhibitor activity // traceable author statement /// 0004861 // cyclin-dependent protein kinase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded 1370055_at M83681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M83681.1 /DB_XREF=gi:206538 /GEN=RAB16 /FEA=FLmRNA /CNT=13 /TID=Rn.9822.1 /TIER=FL+Stack /STK=7 /UG=Rn.9822 /LL=140665 /DEF=Sprague-Dawley (clone LRB2) RAB16 mRNA, complete cds. /PROD=RAB16 /FL=gb:NM_080580.1 gb:U90206.1 gb:M83681.1 M83681 RAB3D, member RAS oncogene family Rab3d 140665 NM_080580 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0017157 // regulation of exocytosis // inferred from electronic annotation /// 0017157 // regulation of exocytosis // not recorded /// 0018125 // peptidyl-cysteine methylation // inferred from electronic annotation /// 0018125 // peptidyl-cysteine methylation // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from direct assay /// 0042588 // zymogen granule // inferred from electronic annotation /// 0042588 // zymogen granule // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0051020 // GTPase binding // inferred from physical interaction 1370056_at NM_020103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020103.1 /DB_XREF=gi:9910397 /GEN=Ly6c /FEA=FLmRNA /CNT=11 /TID=Rn.40119.1 /TIER=FL+Stack /STK=7 /UG=Rn.40119 /LL=56778 /DEF=Rattus norvegicus Ly6-C antigen gene (Ly6c), mRNA. /PROD=Ly6-C antigen gene /FL=gb:NM_020103.1 NM_020103 Ly6-C antigen Ly6c 56778 NM_020103 1370057_at NM_017148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017148.1 /DB_XREF=gi:8393205 /GEN=Csrp1 /FEA=FLmRNA /CNT=60 /TID=Rn.2401.1 /TIER=FL+Stack /STK=6 /UG=Rn.2401 /LL=29276 /DEF=Rattus norvegicus cysteine rich protein 1 (Csrp1), mRNA. /PROD=cysteine rich protein 1 /FL=gb:U09567.1 gb:NM_017148.1 NM_017148 cysteine and glycine-rich protein 1 Csrp1 29276 NM_017148 0007399 // nervous system development // non-traceable author statement 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370058_at NM_031783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031783.1 /DB_XREF=gi:13929097 /GEN=Nfl /FEA=FLmRNA /CNT=47 /TID=Rn.18568.1 /TIER=FL+Stack /STK=6 /UG=Rn.18568 /LL=83613 /DEF=Rattus norvegicus neurofilament, light polypeptide (Nfl), mRNA. /PROD=neurofilament, light polypeptide /FL=gb:AF031880.1 gb:NM_031783.1 NM_031783 neurofilament, light polypeptide Nefl 83613 NM_031783 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0000226 // microtubule cytoskeleton organization // not recorded /// 0006950 // response to stress // inferred from expression pattern /// 0008089 // anterograde axon cargo transport // inferred from electronic annotation /// 0008089 // anterograde axon cargo transport // not recorded /// 0008090 // retrograde axon cargo transport // inferred from electronic annotation /// 0008090 // retrograde axon cargo transport // not recorded /// 0009636 // response to toxin // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014012 // peripheral nervous system axon regeneration // inferred from electronic annotation /// 0014012 // peripheral nervous system axon regeneration // not recorded /// 0019896 // axon transport of mitochondrion // inferred from electronic annotation /// 0019896 // axon transport of mitochondrion // not recorded /// 0031133 // regulation of axon diameter // inferred from electronic annotation /// 0031133 // regulation of axon diameter // not recorded /// 0033693 // neurofilament bundle assembly // inferred from electronic annotation /// 0033693 // neurofilament bundle assembly // not recorded /// 0040011 // locomotion // inferred from electronic annotation /// 0040011 // locomotion // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045109 // intermediate filament organization // not recorded /// 0045109 // intermediate filament organization // inferred from electronic annotation /// 0045110 // intermediate filament bundle assembly // not recorded /// 0045110 // intermediate filament bundle assembly // inferred from electronic annotation /// 0048812 // neuron projection morphogenesis // inferred from electronic annotation /// 0048812 // neuron projection morphogenesis // not recorded /// 0050772 // positive regulation of axonogenesis // inferred from electronic annotation /// 0050772 // positive regulation of axonogenesis // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0051258 // protein polymerization // inferred from direct assay /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0060052 // neurofilament cytoskeleton organization // not recorded /// 0060052 // neurofilament cytoskeleton organization // inferred from electronic annotation 0005829 // cytosol // not recorded /// 0005882 // intermediate filament // not recorded /// 0005882 // intermediate filament // inferred from electronic annotation /// 0005883 // neurofilament // not recorded /// 0005883 // neurofilament // non-traceable author statement /// 0005883 // neurofilament // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0033596 // TSC1-TSC2 complex // inferred from electronic annotation /// 0033596 // TSC1-TSC2 complex // not recorded /// 0043005 // neuron projection // inferred from direct assay 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0043274 // phospholipase binding // inferred from physical interaction 1370059_at BF394545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394545 /DB_XREF=gi:11379411 /DB_XREF=UI-R-CA0-bfx-b-01-0-UI.s1 /CLONE=UI-R-CA0-bfx-b-01-0-UI /FEA=FLmRNA /CNT=47 /TID=Rn.18568.1 /TIER=ConsEnd /STK=1 /UG=Rn.18568 /LL=83613 /UG_GENE=Nfl /UG_TITLE=neurofilament, light polypeptide /FL=gb:AF031880.1 gb:NM_031783.1 BF394545 neurofilament, light polypeptide Nefl 83613 NM_031783 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0000226 // microtubule cytoskeleton organization // not recorded /// 0006950 // response to stress // inferred from expression pattern /// 0008089 // anterograde axon cargo transport // inferred from electronic annotation /// 0008089 // anterograde axon cargo transport // not recorded /// 0008090 // retrograde axon cargo transport // inferred from electronic annotation /// 0008090 // retrograde axon cargo transport // not recorded /// 0009636 // response to toxin // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014012 // peripheral nervous system axon regeneration // inferred from electronic annotation /// 0014012 // peripheral nervous system axon regeneration // not recorded /// 0019896 // axon transport of mitochondrion // inferred from electronic annotation /// 0019896 // axon transport of mitochondrion // not recorded /// 0031133 // regulation of axon diameter // inferred from electronic annotation /// 0031133 // regulation of axon diameter // not recorded /// 0033693 // neurofilament bundle assembly // inferred from electronic annotation /// 0033693 // neurofilament bundle assembly // not recorded /// 0040011 // locomotion // inferred from electronic annotation /// 0040011 // locomotion // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045109 // intermediate filament organization // not recorded /// 0045109 // intermediate filament organization // inferred from electronic annotation /// 0045110 // intermediate filament bundle assembly // not recorded /// 0045110 // intermediate filament bundle assembly // inferred from electronic annotation /// 0048812 // neuron projection morphogenesis // inferred from electronic annotation /// 0048812 // neuron projection morphogenesis // not recorded /// 0050772 // positive regulation of axonogenesis // inferred from electronic annotation /// 0050772 // positive regulation of axonogenesis // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0051258 // protein polymerization // inferred from direct assay /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0060052 // neurofilament cytoskeleton organization // not recorded /// 0060052 // neurofilament cytoskeleton organization // inferred from electronic annotation 0005829 // cytosol // not recorded /// 0005882 // intermediate filament // not recorded /// 0005882 // intermediate filament // inferred from electronic annotation /// 0005883 // neurofilament // not recorded /// 0005883 // neurofilament // non-traceable author statement /// 0005883 // neurofilament // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0033596 // TSC1-TSC2 complex // inferred from electronic annotation /// 0033596 // TSC1-TSC2 complex // not recorded /// 0043005 // neuron projection // inferred from direct assay 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0043274 // phospholipase binding // inferred from physical interaction 1370060_at NM_022398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022398.1 /DB_XREF=gi:11693169 /GEN=LOC64201 /FEA=FLmRNA /CNT=24 /TID=Rn.853.1 /TIER=FL+Stack /STK=6 /UG=Rn.853 /LL=64201 /DEF=Rattus norvegicus 2-oxoglutarate carrier (LOC64201), mRNA. /PROD=2-oxoglutarate carrier /FL=gb:NM_022398.1 gb:U84727.1 NM_022398 solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 Slc25a11 64201 NM_022398 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from mutant phenotype /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from mutant phenotype /// 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1370061_at NM_031091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031091.1 /DB_XREF=gi:13592036 /GEN=Rab3b /FEA=FLmRNA /CNT=22 /TID=Rn.3788.1 /TIER=FL+Stack /STK=6 /UG=Rn.3788 /LL=81755 /DEF=Rattus norvegicus Rab3B protein (Rab3b), mRNA. /PROD=Rab3B protein /FL=gb:NM_031091.1 NM_031091 RAB3B, member RAS oncogene family Rab3b 81755 NM_031091 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0017157 // regulation of exocytosis // not recorded /// 0017157 // regulation of exocytosis // traceable author statement /// 0017157 // regulation of exocytosis // inferred from electronic annotation /// 0018125 // peptidyl-cysteine methylation // not recorded /// 0018125 // peptidyl-cysteine methylation // inferred from electronic annotation 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030141 // stored secretory granule // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // non-traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation 1370062_at NM_080902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080902.1 /DB_XREF=gi:18266711 /GEN=Hig1 /FEA=FLmRNA /CNT=15 /TID=Rn.2084.1 /TIER=FL+Stack /STK=6 /UG=Rn.2084 /DEF=Rattus norvegicus hypoxia induced gene 1 (Hig1), mRNA. /PROD=hypoxia induced gene 1 /FL=gb:AY062253.1 gb:NM_080902.1 NM_080902 HIG1 hypoxia inducible domain family, member 1A Higd1a 140937 NM_080902 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0005515 // protein binding // not recorded 1370063_at NM_080778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080778.1 /DB_XREF=gi:18158444 /GEN=Nr2f2 /FEA=FLmRNA /CNT=14 /TID=Rn.17815.1 /TIER=FL+Stack /STK=6 /UG=Rn.17815 /LL=113984 /DEF=Rattus norvegicus nuclear receptor subfamily 2, group F, member 2 (Nr2f2), mRNA. /PROD=nuclear receptor subfamily 2, group F, member 2 /FL=gb:NM_080778.1 gb:AF003944.1 NM_080778 nuclear receptor subfamily 2, group F, member 2 Nr2f2 113984 NM_080778 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0001937 // negative regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0001945 // lymph vessel development // inferred from electronic annotation /// 0001945 // lymph vessel development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009956 // radial pattern formation // inferred from electronic annotation /// 0009956 // radial pattern formation // not recorded /// 0010596 // negative regulation of endothelial cell migration // inferred from electronic annotation /// 0010596 // negative regulation of endothelial cell migration // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032582 // negative regulation of gene-specific transcription // inferred from electronic annotation /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // not recorded /// 0060173 // limb development // inferred from electronic annotation /// 0060173 // limb development // not recorded /// 0060849 // regulation of transcription involved in lymphatic endothelial cell fate commitment // inferred from electronic annotation /// 0060849 // regulation of transcription involved in lymphatic endothelial cell fate commitment // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0001972 // retinoic acid binding // not recorded /// 0001972 // retinoic acid binding // inferred from sequence or structural similarity /// 0001972 // retinoic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003706 // ligand-regulated transcription factor activity // not recorded /// 0003706 // ligand-regulated transcription factor activity // inferred from sequence or structural similarity /// 0003706 // ligand-regulated transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370064_at AB004454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB004454.1 /DB_XREF=gi:2190042 /FEA=FLmRNA /CNT=17 /TID=Rn.11045.1 /TIER=FL+Stack /STK=6 /UG=Rn.11045 /LL=81751 /UG_GENE=Psen2 /DEF=Rattus norvegicus mRNA for presenilin-2, complete cds. /PROD=presenilin-2 /FL=gb:D83700.1 gb:NM_031087.1 gb:AB004454.1 AB004454 presenilin 2 Psen2 81751 NM_031087 0001666 // response to hypoxia // inferred from expression pattern /// 0001708 // cell fate specification // inferred from electronic annotation /// 0001708 // cell fate specification // not recorded /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001756 // somitogenesis // not recorded /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // not recorded /// 0001942 // hair follicle development // inferred from electronic annotation /// 0001942 // hair follicle development // not recorded /// 0002244 // hemopoietic progenitor cell differentiation // inferred from electronic annotation /// 0002244 // hemopoietic progenitor cell differentiation // not recorded /// 0002286 // T cell activation involved in immune response // inferred from electronic annotation /// 0002286 // T cell activation involved in immune response // not recorded /// 0002573 // myeloid leukocyte differentiation // inferred from electronic annotation /// 0002573 // myeloid leukocyte differentiation // not recorded /// 0006509 // membrane protein ectodomain proteolysis // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007176 // regulation of epidermal growth factor receptor activity // inferred from electronic annotation /// 0007176 // regulation of epidermal growth factor receptor activity // not recorded /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007219 // Notch signaling pathway // not recorded /// 0007611 // learning or memory // not recorded /// 0007611 // learning or memory // inferred from electronic annotation /// 0007613 // memory // inferred from electronic annotation /// 0007613 // memory // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0015031 // protein transport // not recorded /// 0016485 // protein processing // not recorded /// 0016485 // protein processing // inferred from electronic annotation /// 0021904 // dorsal/ventral neural tube patterning // inferred from electronic annotation /// 0021904 // dorsal/ventral neural tube patterning // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0031293 // membrane protein intracellular domain proteolysis // not recorded /// 0040011 // locomotion // inferred from electronic annotation /// 0040011 // locomotion // not recorded /// 0042640 // anagen // inferred from electronic annotation /// 0042640 // anagen // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043085 // positive regulation of catalytic activity // inferred from electronic annotation /// 0043085 // positive regulation of catalytic activity // not recorded /// 0044267 // cellular protein metabolic process // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // not recorded /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // not recorded /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048286 // lung alveolus development // not recorded /// 0048538 // thymus development // inferred from electronic annotation /// 0048538 // thymus development // not recorded /// 0048854 // brain morphogenesis // inferred from electronic annotation /// 0048854 // brain morphogenesis // not recorded /// 0050435 // beta-amyloid metabolic process // inferred from electronic annotation /// 0050435 // beta-amyloid metabolic process // not recorded /// 0050820 // positive regulation of coagulation // inferred from electronic annotation /// 0050820 // positive regulation of coagulation // not recorded /// 0050852 // T cell receptor signaling pathway // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // not recorded /// 0051604 // protein maturation // not recorded /// 0051604 // protein maturation // inferred from electronic annotation /// 0051605 // protein maturation by peptide bond cleavage // inferred from electronic annotation /// 0051605 // protein maturation by peptide bond cleavage // not recorded /// 0060048 // cardiac muscle contraction // inferred from electronic annotation /// 0060048 // cardiac muscle contraction // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0000776 // kinetochore // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005637 // nuclear inner membrane // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005813 // centrosome // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0030018 // Z disc // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043234 // protein complex // not recorded 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004175 // endopeptidase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1370065_at NM_053318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053318.1 /DB_XREF=gi:16758013 /GEN=Hpx /FEA=FLmRNA /CNT=12 /TID=Rn.2380.1 /TIER=FL+Stack /STK=6 /UG=Rn.2380 /LL=58917 /DEF=Rattus norvegicus hemopexin (Hpx), mRNA. /PROD=hemopexin /FL=gb:NM_053318.1 NM_053318 hemopexin Hpx 58917 NM_053318 0002639 // positive regulation of immunoglobulin production // inferred from electronic annotation /// 0002639 // positive regulation of immunoglobulin production // not recorded /// 0002925 // positive regulation of humoral immune response mediated by circulating immunoglobulin // inferred from electronic annotation /// 0002925 // positive regulation of humoral immune response mediated by circulating immunoglobulin // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0020027 // hemoglobin metabolic process // inferred from electronic annotation /// 0020027 // hemoglobin metabolic process // not recorded /// 0042168 // heme metabolic process // inferred from electronic annotation /// 0042168 // heme metabolic process // not recorded /// 0042511 // positive regulation of tyrosine phosphorylation of Stat1 protein // inferred from electronic annotation /// 0042511 // positive regulation of tyrosine phosphorylation of Stat1 protein // not recorded /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // not recorded /// 0060332 // positive regulation of response to interferon-gamma // inferred from electronic annotation /// 0060332 // positive regulation of response to interferon-gamma // not recorded /// 0060335 // positive regulation of interferon-gamma-mediated signaling pathway // inferred from electronic annotation /// 0060335 // positive regulation of interferon-gamma-mediated signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation 0046872 // metal ion binding // inferred from electronic annotation 1370066_at NM_057152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057152.1 /DB_XREF=gi:16924015 /GEN=Keap1 /FEA=FLmRNA /CNT=28 /TID=Rn.23467.1 /TIER=FL+Stack /STK=6 /UG=Rn.23467 /LL=117519 /DEF=Rattus norvegicus Kelch-like ECH-associated protein 1 (Keap1), mRNA. /PROD=Kelch-like ECH-associated protein 1 /FL=gb:AF304364.1 gb:NM_057152.1 NM_057152 Kelch-like ECH-associated protein 1 Keap1 117519 NM_057152 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045604 // regulation of epidermal cell differentiation // inferred from electronic annotation /// 0045604 // regulation of epidermal cell differentiation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded 1370067_at NM_012600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012600.1 /DB_XREF=gi:7106352 /GEN=Me1 /FEA=FLmRNA /CNT=16 /TID=Rn.64900.1 /TIER=FL+Stack /STK=6 /UG=Rn.64900 /LL=24552 /DEF=Rattus norvegicus Malic enzyme 1, soluble (Me1), mRNA. /PROD=malic enzyme 1, soluble /FL=gb:NM_012600.1 NM_012600 malic enzyme 1, NADP(+)-dependent, cytosolic Me1 24552 NM_012600 0006108 // malate metabolic process // not recorded /// 0006108 // malate metabolic process // inferred from sequence or structural similarity /// 0006108 // malate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from direct assay /// 0051262 // protein tetramerization // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004470 // malic enzyme activity // inferred from direct assay /// 0004470 // malic enzyme activity // not recorded /// 0004470 // malic enzyme activity // inferred from sequence or structural similarity /// 0004470 // malic enzyme activity // inferred from electronic annotation /// 0004473 // malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity // inferred from direct assay /// 0004473 // malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity // not recorded /// 0004473 // malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity // inferred from sequence or structural similarity /// 0004473 // malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0030145 // manganese ion binding // not recorded /// 0030145 // manganese ion binding // inferred from sequence or structural similarity /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from direct assay /// 0051287 // NAD or NADH binding // inferred from electronic annotation 1370068_at NM_017174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017174.1 /DB_XREF=gi:8393973 /GEN=Pla2g5 /FEA=FLmRNA /CNT=13 /TID=Rn.20244.1 /TIER=FL+Stack /STK=6 /UG=Rn.20244 /LL=29354 /DEF=Rattus norvegicus phospholipase A2, group V (Pla2g5), mRNA. /PROD=phospholipase A2, group V /FL=gb:NM_017174.1 gb:U03763.1 NM_017174 phospholipase A2, group V Pla2g5 29354 NM_017174 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0006663 // platelet activating factor biosynthetic process // inferred from direct assay /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0019370 // leukotriene biosynthetic process // inferred from direct assay /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0050482 // arachidonic acid secretion // inferred from direct assay /// 0051591 // response to cAMP // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004623 // phospholipase A2 activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047498 // calcium-dependent phospholipase A2 activity // inferred from direct assay 1370069_at NM_134363 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134363.1 /DB_XREF=gi:19705462 /GEN=Slc12a5 /FEA=FLmRNA /CNT=13 /TID=Rn.10513.1 /TIER=FL+Stack /STK=6 /UG=Rn.10513 /LL=171373 /DEF=Rattus norvegicus solute carrier family 12, (potassium-chloride transporter) member 5 (Slc12a5), mRNA. /PROD=solute carrier family 12, (potassium-chloridetransporter) member 5 /FL=gb:U55816.1 gb:NM_134363.1 NM_134363 solute carrier family 12 (potassium-chloride transporter), member 5 Slc12a5 171373 NM_134363 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006813 // potassium ion transport // inferred from direct assay /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from direct assay /// 0006821 // chloride transport // not recorded /// 0006821 // chloride transport // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0015696 // ammonium transport // inferred from direct assay /// 0034220 // ion transmembrane transport // not recorded /// 0051452 // intracellular pH reduction // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032590 // dendrite membrane // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0015293 // symporter activity // inferred from electronic annotation /// 0015377 // cation:chloride symporter activity // inferred from electronic annotation /// 0015379 // potassium:chloride symporter activity // inferred from direct assay /// 0015379 // potassium:chloride symporter activity // not recorded /// 0015379 // potassium:chloride symporter activity // inferred from electronic annotation /// 0051739 // ammonia transmembrane transporter activity // inferred from direct assay 1370070_at NM_053476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053476.1 /DB_XREF=gi:16758227 /GEN=Synj1 /FEA=FLmRNA /CNT=13 /TID=Rn.22685.1 /TIER=FL+Stack /STK=6 /UG=Rn.22685 /LL=85238 /DEF=Rattus norvegicus synaptojanin 1 (Synj1), mRNA. /PROD=synaptojanin 1 /FL=gb:NM_053476.1 NM_053476 synaptojanin 1 Synj1 85238 NM_053476 0006836 // neurotransmitter transport // not recorded /// 0006897 // endocytosis // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0007612 // learning // not recorded /// 0014015 // positive regulation of gliogenesis // inferred from mutant phenotype /// 0016082 // synaptic vesicle priming // not recorded /// 0016191 // synaptic vesicle uncoating // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030384 // phosphoinositide metabolic process // not recorded /// 0032526 // response to retinoic acid // inferred from mutant phenotype /// 0034097 // response to cytokine stimulus // inferred from mutant phenotype /// 0046856 // phosphoinositide dephosphorylation // not recorded /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from mutant phenotype /// 0048488 // synaptic vesicle endocytosis // not recorded /// 0048489 // synaptic vesicle transport // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030117 // membrane coat // not recorded /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from direct assay /// 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0004439 // phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity // inferred from electronic annotation /// 0004439 // phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017120 // polyphosphoinositide phosphatase activity // not recorded /// 0017124 // SH3 domain binding // inferred from direct assay /// 0017124 // SH3 domain binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from direct assay /// 0034595 // phosphoinositide 5-phosphatase activity // not recorded 1370071_at NM_130399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130399.1 /DB_XREF=gi:18426811 /GEN=Ada /FEA=FLmRNA /CNT=12 /TID=Rn.12689.1 /TIER=FL+Stack /STK=6 /UG=Rn.12689 /DEF=Rattus norvegicus Adenosine deaminase (Ada), mRNA. /PROD=adenosine deaminase /FL=gb:AB059655.1 gb:NM_130399.1 NM_130399 adenosine deaminase Ada 24165 NM_130399 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001829 // trophectodermal cell differentiation // inferred from electronic annotation /// 0001829 // trophectodermal cell differentiation // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0001890 // placenta development // inferred from electronic annotation /// 0001890 // placenta development // not recorded /// 0002314 // germinal center B cell differentiation // inferred from electronic annotation /// 0002314 // germinal center B cell differentiation // not recorded /// 0002636 // positive regulation of germinal center formation // inferred from electronic annotation /// 0002636 // positive regulation of germinal center formation // not recorded /// 0002686 // negative regulation of leukocyte migration // inferred from electronic annotation /// 0002686 // negative regulation of leukocyte migration // not recorded /// 0002906 // negative regulation of mature B cell apoptosis // inferred from electronic annotation /// 0002906 // negative regulation of mature B cell apoptosis // not recorded /// 0006154 // adenosine catabolic process // not recorded /// 0006154 // adenosine catabolic process // inferred from sequence or structural similarity /// 0006154 // adenosine catabolic process // inferred from electronic annotation /// 0006157 // deoxyadenosine catabolic process // inferred from electronic annotation /// 0006157 // deoxyadenosine catabolic process // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0009117 // nucleotide metabolic process // inferred from electronic annotation /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // inferred from electronic annotation /// 0010460 // positive regulation of heart rate // inferred from electronic annotation /// 0010460 // positive regulation of heart rate // not recorded /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // not recorded /// 0032261 // purine nucleotide salvage // inferred from electronic annotation /// 0032261 // purine nucleotide salvage // not recorded /// 0033089 // positive regulation of T cell differentiation in thymus // inferred from electronic annotation /// 0033089 // positive regulation of T cell differentiation in thymus // not recorded /// 0033197 // response to vitamin E // inferred from direct assay /// 0033632 // regulation of cell-cell adhesion mediated by integrin // inferred from electronic annotation /// 0033632 // regulation of cell-cell adhesion mediated by integrin // not recorded /// 0042110 // T cell activation // not recorded /// 0042110 // T cell activation // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045187 // regulation of circadian sleep/wake cycle, sleep // inferred from expression pattern /// 0045580 // regulation of T cell differentiation // not recorded /// 0045580 // regulation of T cell differentiation // inferred from electronic annotation /// 0045582 // positive regulation of T cell differentiation // not recorded /// 0045582 // positive regulation of T cell differentiation // inferred from electronic annotation /// 0045987 // positive regulation of smooth muscle contraction // inferred from electronic annotation /// 0045987 // positive regulation of smooth muscle contraction // not recorded /// 0046061 // dATP catabolic process // inferred from electronic annotation /// 0046061 // dATP catabolic process // not recorded /// 0046085 // adenosine metabolic process // inferred from direct assay /// 0046085 // adenosine metabolic process // traceable author statement /// 0046101 // hypoxanthine biosynthetic process // inferred from electronic annotation /// 0046101 // hypoxanthine biosynthetic process // not recorded /// 0046103 // inosine biosynthetic process // not recorded /// 0046103 // inosine biosynthetic process // inferred from sequence or structural similarity /// 0046103 // inosine biosynthetic process // inferred from electronic annotation /// 0046111 // xanthine biosynthetic process // inferred from electronic annotation /// 0046111 // xanthine biosynthetic process // not recorded /// 0046638 // positive regulation of alpha-beta T cell differentiation // inferred from electronic annotation /// 0046638 // positive regulation of alpha-beta T cell differentiation // not recorded /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048286 // lung alveolus development // not recorded /// 0048541 // Peyer's patch development // inferred from electronic annotation /// 0048541 // Peyer's patch development // not recorded /// 0048566 // embryonic digestive tract development // inferred from electronic annotation /// 0048566 // embryonic digestive tract development // not recorded /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // not recorded /// 0050850 // positive regulation of calcium-mediated signaling // inferred from electronic annotation /// 0050850 // positive regulation of calcium-mediated signaling // not recorded /// 0050862 // positive regulation of T cell receptor signaling pathway // inferred from electronic annotation /// 0050862 // positive regulation of T cell receptor signaling pathway // not recorded /// 0050870 // positive regulation of T cell activation // not recorded /// 0050870 // positive regulation of T cell activation // inferred from electronic annotation /// 0060169 // negative regulation of adenosine receptor signaling pathway // inferred from electronic annotation /// 0060169 // negative regulation of adenosine receptor signaling pathway // not recorded /// 0060407 // negative regulation of penile erection // inferred from electronic annotation /// 0060407 // negative regulation of penile erection // not recorded /// 0070244 // negative regulation of thymocyte apoptosis // inferred from electronic annotation /// 0070244 // negative regulation of thymocyte apoptosis // not recorded /// 0070256 // negative regulation of mucus secretion // inferred from electronic annotation /// 0070256 // negative regulation of mucus secretion // not recorded 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032839 // dendrite cytoplasm // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0060205 // cytoplasmic membrane-bounded vesicle lumen // inferred from electronic annotation 0001883 // purine nucleoside binding // inferred from direct assay /// 0004000 // adenosine deaminase activity // inferred from direct assay /// 0004000 // adenosine deaminase activity // not recorded /// 0004000 // adenosine deaminase activity // inferred from sequence or structural similarity /// 0004000 // adenosine deaminase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019239 // deaminase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370072_at NM_012608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012608.1 /DB_XREF=gi:6981209 /GEN=Mme /FEA=FLmRNA /CNT=15 /TID=Rn.33598.1 /TIER=FL+Stack /STK=6 /UG=Rn.33598 /LL=24590 /DEF=Rattus norvegicus Membrane metallo-endopeptidase (neutral endopeptidaseenkephalinase) (Mme), mRNA. /PROD=membrane metallo-endopeptidase (neutralendopeptidaseenkephalinase) /FL=gb:NM_012608.1 NM_012608 membrane metallo endopeptidase Mme 24590 NM_012608 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from mutant phenotype /// 0006508 // proteolysis // inferred from electronic annotation /// 0006518 // peptide metabolic process // inferred from mutant phenotype /// 0008152 // metabolic process // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0042277 // peptide binding // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation 1370073_at NM_022232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022232.1 /DB_XREF=gi:11560029 /GEN=LOC63880 /FEA=FLmRNA /CNT=12 /TID=Rn.44825.1 /TIER=FL+Stack /STK=6 /UG=Rn.44825 /LL=63880 /DEF=Rattus norvegicus protein kinase inhibitor p58 (LOC63880), mRNA. /PROD=protein kinase inhibitor p58 /FL=gb:AB017702.3 gb:NM_022232.1 NM_022232 DnaJ (Hsp40) homolog, subfamily C, member 3 Dnajc3 63880 NM_022232 0006986 // response to unfolded protein // inferred from electronic annotation /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation /// 0051603 // proteolysis involved in cellular protein catabolic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // not recorded /// 0031205 // endoplasmic reticulum Sec complex // inferred from electronic annotation /// 0031205 // endoplasmic reticulum Sec complex // not recorded 0005488 // binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051087 // chaperone binding // inferred from electronic annotation /// 0051087 // chaperone binding // not recorded /// 0051787 // misfolded protein binding // inferred from electronic annotation /// 0051787 // misfolded protein binding // not recorded 1370074_at NM_057196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057196.1 /DB_XREF=gi:17105347 /GEN=Baiap2 /FEA=FLmRNA /CNT=16 /TID=Rn.13017.1 /TIER=FL+Stack /STK=6 /UG=Rn.13017 /LL=117542 /DEF=Rattus norvegicus brain-specific angiogenesis inhibitor 1-associated protein 2 (Baiap2), mRNA. /PROD=brain-specific angiogenesis inhibitor1-associated protein 2 /FL=gb:AY037934.1 gb:NM_057196.1 NM_057196 BAI1-associated protein 2 Baiap2 117542 NM_057196 0007165 // signal transduction // inferred from electronic annotation /// 0046847 // filopodium assembly // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030175 // filopodium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008093 // cytoskeletal adaptor activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation 1370075_at NM_130400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130400.1 /DB_XREF=gi:18426813 /GEN=Dhfr1 /FEA=FLmRNA /CNT=14 /TID=Rn.15056.1 /TIER=FL+Stack /STK=6 /UG=Rn.15056 /DEF=Rattus norvegicus Dihydrofolate reductase 1 (active) (Dhfr1), mRNA. /PROD=dihydrofolate reductase 1 (active) /FL=gb:NM_130400.1 gb:AF318150.1 NM_130400 dihydrofolate reductase Dhfr 24312 NM_130400 0006545 // glycine biosynthetic process // inferred from electronic annotation /// 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0009165 // nucleotide biosynthetic process // inferred from electronic annotation /// 0031427 // response to methotrexate // inferred from electronic annotation /// 0035094 // response to nicotine // inferred from expression pattern /// 0046452 // dihydrofolate metabolic process // inferred from direct assay /// 0046653 // tetrahydrofolate metabolic process // not recorded /// 0046653 // tetrahydrofolate metabolic process // inferred from sequence or structural similarity /// 0046654 // tetrahydrofolate biosynthetic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay 0004146 // dihydrofolate reductase activity // inferred from direct assay /// 0004146 // dihydrofolate reductase activity // inferred from mutant phenotype /// 0004146 // dihydrofolate reductase activity // not recorded /// 0004146 // dihydrofolate reductase activity // inferred from sequence or structural similarity /// 0004146 // dihydrofolate reductase activity // inferred from electronic annotation /// 0008144 // drug binding // not recorded /// 0008144 // drug binding // inferred from sequence or structural similarity /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from direct assay /// 0050661 // NADP or NADPH binding // inferred from electronic annotation /// 0051871 // dihydrofolic acid binding // inferred from direct assay 1370076_at NM_053314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053314.1 /DB_XREF=gi:16758009 /GEN=Kcnj16 /FEA=FLmRNA /CNT=9 /TID=Rn.1989.1 /TIER=FL+Stack /STK=6 /UG=Rn.1989 /LL=29719 /DEF=Rattus norvegicus potassium inwardly-rectifying channel, subfamily J, member 16 (Kcnj16), mRNA. /PROD=potassium inwardly-rectifying channel, subfamilyJ, member 16 /FL=gb:NM_053314.1 NM_053314 potassium inwardly-rectifying channel, subfamily J, member 16 Kcnj16 29719 NM_053314 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1370077_at NM_019130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019130.1 /DB_XREF=gi:9506816 /GEN=Ins2 /FEA=FLmRNA /CNT=51 /TID=Rn.989.1 /TIER=FL /STK=5 /UG=Rn.989 /LL=24506 /DEF=Rattus norvegicus Insulin 2 (Ins2), mRNA. /PROD=insulin 2 /FL=gb:NM_019130.1 NM_019130 insulin 2 Ins2 24506 NM_019130 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000165 // MAPKKK cascade // not recorded /// 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0002674 // negative regulation of acute inflammatory response // not recorded /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006521 // regulation of cellular amino acid metabolic process // not recorded /// 0006953 // acute-phase response // not recorded /// 0006983 // ER overload response // inferred from electronic annotation /// 0006983 // ER overload response // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007257 // activation of JUN kinase activity // not recorded /// 0007520 // myoblast fusion // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // not recorded /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0014902 // myotube differentiation // not recorded /// 0015758 // glucose transport // not recorded /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // not recorded /// 0022898 // regulation of transmembrane transporter activity // not recorded /// 0032148 // activation of protein kinase B activity // not recorded /// 0032270 // positive regulation of cellular protein metabolic process // not recorded /// 0032880 // regulation of protein localization // not recorded /// 0033861 // negative regulation of NAD(P)H oxidase activity // not recorded /// 0042060 // wound healing // not recorded /// 0042177 // negative regulation of protein catabolic process // not recorded /// 0042325 // regulation of phosphorylation // inferred from electronic annotation /// 0042325 // regulation of phosphorylation // not recorded /// 0042593 // glucose homeostasis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0045725 // positive regulation of glycogen biosynthetic process // not recorded /// 0045740 // positive regulation of DNA replication // not recorded /// 0045818 // negative regulation of glycogen catabolic process // not recorded /// 0045821 // positive regulation of glycolysis // not recorded /// 0045840 // positive regulation of mitosis // not recorded /// 0045861 // negative regulation of proteolysis // not recorded /// 0045922 // negative regulation of fatty acid metabolic process // not recorded /// 0046326 // positive regulation of glucose import // not recorded /// 0046628 // positive regulation of insulin receptor signaling pathway // not recorded /// 0046631 // alpha-beta T cell activation // not recorded /// 0050708 // regulation of protein secretion // not recorded /// 0050709 // negative regulation of protein secretion // not recorded /// 0050715 // positive regulation of cytokine secretion // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded /// 0055089 // fatty acid homeostasis // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060266 // negative regulation of respiratory burst involved in inflammatory response // not recorded /// 0060267 // positive regulation of respiratory burst // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005732 // small nucleolar ribonucleoprotein complex // inferred from electronic annotation /// 0005732 // small nucleolar ribonucleoprotein complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030141 // stored secretory granule // inferred from direct assay /// 0030141 // stored secretory granule // not recorded /// 0030141 // stored secretory granule // inferred from electronic annotation 0002020 // protease binding // inferred from physical interaction /// 0005158 // insulin receptor binding // not recorded /// 0005159 // insulin-like growth factor receptor binding // not recorded /// 0005179 // hormone activity // inferred from electronic annotation /// 0005179 // hormone activity // not recorded /// 0005515 // protein binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction 1370078_at NM_021758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021758.1 /DB_XREF=gi:11120707 /GEN=Veli1a /FEA=FLmRNA /CNT=9 /TID=Rn.44184.1 /TIER=FL /STK=5 /UG=Rn.44184 /LL=60377 /DEF=Rattus norvegicus lin-7-A (Veli1a), mRNA. /PROD=lin-7-A /FL=gb:NM_021758.1 gb:AF090133.1 NM_021758 lin-7 homolog b (C. elegans) Lin7b 60377 NM_021758 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0007043 // cell-cell junction assembly // non-traceable author statement /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // not recorded /// 0015031 // protein transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // inferred from direct assay /// 0005923 // tight junction // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1370079_at NM_022505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022505.1 /DB_XREF=gi:11968075 /GEN=Rh /FEA=FLmRNA /CNT=8 /TID=Rn.1943.1 /TIER=FL /STK=5 /UG=Rn.1943 /LL=60414 /DEF=Rattus norvegicus Rhesus blood group (Rh), mRNA. /PROD=Rhesus blood group /FL=gb:NM_022505.1 gb:AB015191.1 NM_022505 Rh blood group, D antigen Rhd 60414 NM_022505 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0008519 // ammonium transmembrane transporter activity // inferred from electronic annotation 1370080_at NM_012580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012580.1 /DB_XREF=gi:6981031 /GEN=Hmox1 /FEA=FLmRNA /CNT=14 /TID=Rn.3160.1 /TIER=FL /STK=5 /UG=Rn.3160 /LL=24451 /DEF=Rattus norvegicus Heme oxygenase (Hmox1), mRNA. /PROD=heme oxygenas /FL=gb:NM_012580.1 NM_012580 heme oxygenase (decycling) 1 Hmox1 24451 NM_012580 0001525 // angiogenesis // inferred from direct assay /// 0001666 // response to hypoxia // inferred from expression pattern /// 0002246 // wound healing involved in inflammatory response // inferred from electronic annotation /// 0002246 // wound healing involved in inflammatory response // not recorded /// 0006644 // phospholipid metabolic process // traceable author statement /// 0006788 // heme oxidation // inferred from electronic annotation /// 0006788 // heme oxidation // not recorded /// 0006788 // heme oxidation // traceable author statement /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from direct assay /// 0006979 // response to oxidative stress // not recorded /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from direct assay /// 0008217 // regulation of blood pressure // inferred from direct assay /// 0008219 // cell death // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008630 // DNA damage response, signal transduction resulting in induction of apoptosis // inferred from direct assay /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0031670 // cellular response to nutrient // inferred from expression pattern /// 0032764 // negative regulation of mast cell cytokine production // inferred from direct assay /// 0034101 // erythrocyte homeostasis // inferred from electronic annotation /// 0034101 // erythrocyte homeostasis // not recorded /// 0035094 // response to nicotine // inferred from electronic annotation /// 0035094 // response to nicotine // not recorded /// 0042167 // heme catabolic process // inferred from direct assay /// 0042167 // heme catabolic process // not recorded /// 0042167 // heme catabolic process // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043305 // negative regulation of mast cell degranulation // inferred from direct assay /// 0043392 // negative regulation of DNA binding // inferred from direct assay /// 0043433 // negative regulation of transcription factor activity // inferred from direct assay /// 0043524 // negative regulation of neuron apoptosis // inferred from mutant phenotype /// 0043619 // regulation of transcription from RNA polymerase II promoter in response to oxidative stress // inferred from direct assay /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0045768 // positive regulation of anti-apoptosis // inferred from direct assay /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // not recorded /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0048662 // negative regulation of smooth muscle cell proliferation // not recorded /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050896 // response to stimulus // not recorded /// 0051090 // regulation of transcription factor activity // inferred from direct assay /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded /// 0055072 // iron ion homeostasis // inferred from electronic annotation /// 0055072 // iron ion homeostasis // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005901 // caveola // inferred from direct assay 0004392 // heme oxygenase (decyclizing) activity // inferred from direct assay /// 0004392 // heme oxygenase (decyclizing) activity // inferred from electronic annotation /// 0004392 // heme oxygenase (decyclizing) activity // not recorded /// 0004392 // heme oxygenase (decyclizing) activity // traceable author statement /// 0004630 // phospholipase D activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0020037 // heme binding // inferred from direct assay /// 0020037 // heme binding // not recorded /// 0020037 // heme binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1370081_a_at AF080594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF080594.1 /DB_XREF=gi:3643122 /GEN=VEGF /FEA=mRNA /CNT=1 /TID=Rn.1923.5 /TIER=ConsEnd /STK=0 /UG=Rn.1923 /LL=83785 /DEF=Rattus norvegicus vascular endothelial growth factor A 110 precursor (VEGF) mRNA, alternatively spliced product, partial cds. /PROD=vascular endothelial growth factor A 110precursor AF080594 vascular endothelial growth factor A Vegfa 83785 NM_001110333 /// NM_001110334 /// NM_001110335 /// NM_001110336 /// NM_031836 0001525 // angiogenesis // inferred from mutant phenotype /// 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // traceable author statement /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001541 // ovarian follicle development // inferred from electronic annotation /// 0001541 // ovarian follicle development // not recorded /// 0001568 // blood vessel development // not recorded /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001666 // response to hypoxia // inferred from direct assay /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0001944 // vasculature development // not recorded /// 0001944 // vasculature development // inferred from electronic annotation /// 0001974 // blood vessel remodeling // inferred from mutant phenotype /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0002575 // basophil chemotaxis // inferred from electronic annotation /// 0002575 // basophil chemotaxis // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from direct assay /// 0007399 // nervous system development // non-traceable author statement /// 0007498 // mesoderm development // inferred from electronic annotation /// 0007498 // mesoderm development // not recorded /// 0007595 // lactation // inferred from electronic annotation /// 0007595 // lactation // not recorded /// 0007610 // behavior // inferred from electronic annotation /// 0007610 // behavior // not recorded /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0009409 // response to cold // inferred from expression pattern /// 0009967 // positive regulation of signal transduction // inferred from direct assay /// 0010595 // positive regulation of endothelial cell migration // not recorded /// 0010595 // positive regulation of endothelial cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0031077 // post-embryonic camera-type eye development // inferred from electronic annotation /// 0031077 // post-embryonic camera-type eye development // not recorded /// 0040007 // growth // inferred from electronic annotation /// 0040007 // growth // not recorded /// 0042088 // T-helper 1 type immune response // inferred from direct assay /// 0042462 // eye photoreceptor cell development // inferred from electronic annotation /// 0042462 // eye photoreceptor cell development // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043069 // negative regulation of programmed cell death // inferred from mutant phenotype /// 0043117 // positive regulation of vascular permeability // inferred from mutant phenotype /// 0043117 // positive regulation of vascular permeability // not recorded /// 0043117 // positive regulation of vascular permeability // inferred from electronic annotation /// 0043129 // surfactant homeostasis // inferred from electronic annotation /// 0043129 // surfactant homeostasis // not recorded /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from electronic annotation /// 0043536 // positive regulation of blood vessel endothelial cell migration // not recorded /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0045779 // negative regulation of bone resorption // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0048008 // platelet-derived growth factor receptor signaling pathway // not recorded /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from mutant phenotype /// 0048010 // vascular endothelial growth factor receptor signaling pathway // not recorded /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0048255 // mRNA stabilization // inferred from direct assay /// 0048286 // lung alveolus development // inferred from mutant phenotype /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded /// 0048514 // blood vessel morphogenesis // not recorded /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0048739 // cardiac muscle fiber development // inferred from electronic annotation /// 0048739 // cardiac muscle fiber development // not recorded /// 0048754 // branching morphogenesis of a tube // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048844 // artery morphogenesis // inferred from electronic annotation /// 0048844 // artery morphogenesis // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050927 // positive regulation of positive chemotaxis // not recorded /// 0050927 // positive regulation of positive chemotaxis // inferred from electronic annotation /// 0050930 // induction of positive chemotaxis // inferred from electronic annotation /// 0050930 // induction of positive chemotaxis // not recorded /// 0051272 // positive regulation of cellular component movement // inferred from electronic annotation /// 0051272 // positive regulation of cellular component movement // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0060319 // primitive erythrocyte differentiation // inferred from electronic annotation /// 0060319 // primitive erythrocyte differentiation // not recorded /// 0060749 // mammary gland alveolus development // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // not recorded /// 0060754 // positive regulation of mast cell chemotaxis // inferred from electronic annotation /// 0060754 // positive regulation of mast cell chemotaxis // not recorded /// 0071456 // cellular response to hypoxia // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // not recorded /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005604 // basement membrane // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from electronic annotation /// 0030141 // stored secretory granule // not recorded /// 0031093 // platelet alpha granule lumen // not recorded /// 0031988 // membrane-bounded vesicle // inferred from direct assay 0001968 // fibronectin binding // inferred from electronic annotation /// 0001968 // fibronectin binding // not recorded /// 0005161 // platelet-derived growth factor receptor binding // inferred from electronic annotation /// 0005161 // platelet-derived growth factor receptor binding // not recorded /// 0005172 // vascular endothelial growth factor receptor binding // not recorded /// 0005172 // vascular endothelial growth factor receptor binding // traceable author statement /// 0005172 // vascular endothelial growth factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded /// 0042056 // chemoattractant activity // inferred from electronic annotation /// 0042056 // chemoattractant activity // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043183 // vascular endothelial growth factor receptor 1 binding // inferred from electronic annotation /// 0043183 // vascular endothelial growth factor receptor 1 binding // not recorded /// 0043184 // vascular endothelial growth factor receptor 2 binding // inferred from electronic annotation /// 0043184 // vascular endothelial growth factor receptor 2 binding // inferred from mutant phenotype /// 0043184 // vascular endothelial growth factor receptor 2 binding // not recorded /// 0043498 // cell surface binding // inferred from electronic annotation /// 0043498 // cell surface binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1370082_at NM_021578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021578.1 /DB_XREF=gi:11024651 /GEN=Tgfb1 /FEA=FLmRNA /CNT=9 /TID=Rn.40136.1 /TIER=FL /STK=4 /UG=Rn.40136 /LL=59086 /DEF=Rattus norvegicus transforming growth factor, beta-1 (Tgfb1), mRNA. /PROD=transforming growth factor, beta-1 /FL=gb:NM_021578.1 NM_021578 transforming growth factor, beta 1 Tgfb1 59086 NM_021578 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001558 // regulation of cell growth // traceable author statement /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001763 // morphogenesis of a branching structure // inferred from direct assay /// 0001837 // epithelial to mesenchymal transition // inferred from direct assay /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // not recorded /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0002028 // regulation of sodium ion transport // inferred from electronic annotation /// 0002028 // regulation of sodium ion transport // not recorded /// 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // not recorded /// 0002244 // hemopoietic progenitor cell differentiation // inferred from electronic annotation /// 0002244 // hemopoietic progenitor cell differentiation // not recorded /// 0002513 // tolerance induction to self antigen // inferred from electronic annotation /// 0002513 // tolerance induction to self antigen // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006611 // protein export from nucleus // inferred from electronic annotation /// 0006611 // protein export from nucleus // not recorded /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006754 // ATP biosynthetic process // not recorded /// 0006796 // phosphate metabolic process // inferred from electronic annotation /// 0006796 // phosphate metabolic process // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007183 // SMAD protein complex assembly // inferred from electronic annotation /// 0007183 // SMAD protein complex assembly // not recorded /// 0007184 // SMAD protein nuclear translocation // inferred from direct assay /// 0007184 // SMAD protein nuclear translocation // not recorded /// 0007184 // SMAD protein nuclear translocation // inferred from electronic annotation /// 0007406 // negative regulation of neuroblast proliferation // inferred from direct assay /// 0007435 // salivary gland morphogenesis // inferred from electronic annotation /// 0007435 // salivary gland morphogenesis // not recorded /// 0007492 // endoderm development // inferred from electronic annotation /// 0007492 // endoderm development // not recorded /// 0007565 // female pregnancy // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008156 // negative regulation of DNA replication // inferred from electronic annotation /// 0008156 // negative regulation of DNA replication // not recorded /// 0008219 // cell death // inferred from electronic annotation /// 0008219 // cell death // not recorded /// 0008283 // cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008354 // germ cell migration // inferred from electronic annotation /// 0008354 // germ cell migration // not recorded /// 0009314 // response to radiation // inferred from expression pattern /// 0009611 // response to wounding // not recorded /// 0009611 // response to wounding // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0009790 // embryo development // inferred from expression pattern /// 0009817 // defense response to fungus, incompatible interaction // inferred from direct assay /// 0010033 // response to organic substance // inferred from direct assay /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010628 // positive regulation of gene expression // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from electronic annotation /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0010763 // positive regulation of fibroblast migration // inferred from electronic annotation /// 0010763 // positive regulation of fibroblast migration // not recorded /// 0010800 // positive regulation of peptidyl-threonine phosphorylation // inferred from electronic annotation /// 0010800 // positive regulation of peptidyl-threonine phosphorylation // not recorded /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016049 // cell growth // inferred from electronic annotation /// 0016202 // regulation of striated muscle tissue development // inferred from electronic annotation /// 0016202 // regulation of striated muscle tissue development // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0019049 // evasion of host defenses by virus // inferred from electronic annotation /// 0019049 // evasion of host defenses by virus // not recorded /// 0022408 // negative regulation of cell-cell adhesion // inferred from electronic annotation /// 0022408 // negative regulation of cell-cell adhesion // not recorded /// 0030217 // T cell differentiation // not recorded /// 0030217 // T cell differentiation // inferred from electronic annotation /// 0030279 // negative regulation of ossification // inferred from electronic annotation /// 0030279 // negative regulation of ossification // not recorded /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0030324 // lung development // traceable author statement /// 0030501 // positive regulation of bone mineralization // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0030879 // mammary gland development // not recorded /// 0031065 // positive regulation of histone deacetylation // inferred from electronic annotation /// 0031065 // positive regulation of histone deacetylation // not recorded /// 0031100 // organ regeneration // inferred from mutant phenotype /// 0031536 // positive regulation of exit from mitosis // inferred from direct assay /// 0031575 // mitotic cell cycle G1/S transition checkpoint // inferred from electronic annotation /// 0031575 // mitotic cell cycle G1/S transition checkpoint // not recorded /// 0032270 // positive regulation of cellular protein metabolic process // inferred from electronic annotation /// 0032270 // positive regulation of cellular protein metabolic process // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032355 // response to estradiol stimulus // not recorded /// 0032355 // response to estradiol stimulus // inferred from electronic annotation /// 0032570 // response to progesterone stimulus // inferred from electronic annotation /// 0032570 // response to progesterone stimulus // not recorded /// 0032740 // positive regulation of interleukin-17 production // inferred from electronic annotation /// 0032740 // positive regulation of interleukin-17 production // not recorded /// 0032801 // receptor catabolic process // inferred from electronic annotation /// 0032801 // receptor catabolic process // not recorded /// 0032943 // mononuclear cell proliferation // inferred from electronic annotation /// 0032943 // mononuclear cell proliferation // not recorded /// 0032967 // positive regulation of collagen biosynthetic process // inferred from electronic annotation /// 0032967 // positive regulation of collagen biosynthetic process // not recorded /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033138 // positive regulation of peptidyl-serine phosphorylation // not recorded /// 0033280 // response to vitamin D // inferred from expression pattern /// 0034616 // response to laminar fluid shear stress // inferred from expression pattern /// 0035066 // positive regulation of histone acetylation // inferred from electronic annotation /// 0035066 // positive regulation of histone acetylation // not recorded /// 0035307 // positive regulation of protein dephosphorylation // inferred from electronic annotation /// 0035307 // positive regulation of protein dephosphorylation // not recorded /// 0040007 // growth // inferred from electronic annotation /// 0042060 // wound healing // inferred from expression pattern /// 0042060 // wound healing // inferred from mutant phenotype /// 0042110 // T cell activation // not recorded /// 0042110 // T cell activation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // traceable author statement /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042130 // negative regulation of T cell proliferation // inferred from electronic annotation /// 0042130 // negative regulation of T cell proliferation // not recorded /// 0042306 // regulation of protein import into nucleus // inferred from electronic annotation /// 0042306 // regulation of protein import into nucleus // not recorded /// 0042482 // positive regulation of odontogenesis // inferred from electronic annotation /// 0042482 // positive regulation of odontogenesis // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042552 // myelination // inferred from mutant phenotype /// 0043011 // myeloid dendritic cell differentiation // inferred from electronic annotation /// 0043011 // myeloid dendritic cell differentiation // not recorded /// 0043029 // T cell homeostasis // inferred from electronic annotation /// 0043029 // T cell homeostasis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from direct assay /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // not recorded /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from electronic annotation /// 0043536 // positive regulation of blood vessel endothelial cell migration // not recorded /// 0043537 // negative regulation of blood vessel endothelial cell migration // inferred from electronic annotation /// 0043537 // negative regulation of blood vessel endothelial cell migration // not recorded /// 0043552 // positive regulation of phosphoinositide 3-kinase activity // inferred from electronic annotation /// 0043552 // positive regulation of phosphoinositide 3-kinase activity // not recorded /// 0043932 // ossification involved in bone remodeling // inferred from electronic annotation /// 0043932 // ossification involved in bone remodeling // not recorded /// 0045066 // regulatory T cell differentiation // inferred from electronic annotation /// 0045066 // regulatory T cell differentiation // not recorded /// 0045216 // cell-cell junction organization // inferred from electronic annotation /// 0045216 // cell-cell junction organization // not recorded /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // not recorded /// 0045786 // negative regulation of cell cycle // not recorded /// 0045786 // negative regulation of cell cycle // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045930 // negative regulation of mitotic cell cycle // inferred from electronic annotation /// 0045930 // negative regulation of mitotic cell cycle // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048298 // positive regulation of isotype switching to IgA isotypes // inferred from electronic annotation /// 0048298 // positive regulation of isotype switching to IgA isotypes // not recorded /// 0048535 // lymph node development // inferred from electronic annotation /// 0048535 // lymph node development // not recorded /// 0048565 // digestive tract development // inferred from expression pattern /// 0048839 // inner ear development // inferred from expression pattern /// 0050679 // positive regulation of epithelial cell proliferation // inferred from direct assay /// 0050680 // negative regulation of epithelial cell proliferation // inferred from direct assay /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050714 // positive regulation of protein secretion // inferred from electronic annotation /// 0050714 // positive regulation of protein secretion // not recorded /// 0050765 // negative regulation of phagocytosis // inferred from direct assay /// 0050777 // negative regulation of immune response // inferred from direct assay /// 0050868 // negative regulation of T cell activation // not recorded /// 0050868 // negative regulation of T cell activation // inferred from electronic annotation /// 0050921 // positive regulation of chemotaxis // inferred from electronic annotation /// 0050921 // positive regulation of chemotaxis // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0051098 // regulation of binding // not recorded /// 0051098 // regulation of binding // inferred from electronic annotation /// 0051101 // regulation of DNA binding // inferred from electronic annotation /// 0051101 // regulation of DNA binding // not recorded /// 0051152 // positive regulation of smooth muscle cell differentiation // inferred from direct assay /// 0051280 // negative regulation of release of sequestered calcium ion into cytosol // inferred from direct assay /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded /// 0051897 // positive regulation of protein kinase B signaling cascade // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded /// 0060364 // frontal suture morphogenesis // inferred from expression pattern /// 0060389 // pathway-restricted SMAD protein phosphorylation // not recorded /// 0060389 // pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0060391 // positive regulation of SMAD protein nuclear translocation // inferred from electronic annotation /// 0060391 // positive regulation of SMAD protein nuclear translocation // not recorded /// 0060744 // mammary gland branching involved in thelarche // inferred from electronic annotation /// 0060744 // mammary gland branching involved in thelarche // not recorded /// 0060751 // branch elongation involved in mammary gland duct branching // inferred from electronic annotation /// 0060751 // branch elongation involved in mammary gland duct branching // not recorded /// 0060762 // regulation of branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060762 // regulation of branching involved in mammary gland duct morphogenesis // not recorded /// 0070306 // lens fiber cell differentiation // inferred from electronic annotation /// 0070306 // lens fiber cell differentiation // not recorded /// 0070723 // response to cholesterol // inferred from electronic annotation /// 0070723 // response to cholesterol // not recorded /// 0071158 // positive regulation of cell cycle arrest // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // not recorded /// 0071549 // cellular response to dexamethasone stimulus // inferred from direct assay /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005796 // Golgi lumen // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // not recorded /// 0043025 // neuronal cell body // inferred from direct assay 0005114 // type II transforming growth factor beta receptor binding // inferred from electronic annotation /// 0005114 // type II transforming growth factor beta receptor binding // not recorded /// 0005160 // transforming growth factor beta receptor binding // inferred by curator /// 0005160 // transforming growth factor beta receptor binding // traceable author statement /// 0005160 // transforming growth factor beta receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from mutant phenotype 1370083_at NM_020542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020542.1 /DB_XREF=gi:10120493 /GEN=LOC57301 /FEA=FLmRNA /CNT=6 /TID=Rn.34673.1 /TIER=FL /STK=4 /UG=Rn.34673 /LL=57301 /DEF=Rattus norvegicus macrophage inflammatory protein-1 alpha receptor gene (LOC57301), mRNA. /PROD=macrophage inflammatory protein-1 alpha receptorgene /FL=gb:NM_020542.1 NM_020542 chemokine (C-C motif) receptor 1 Ccr1 57301 NM_020542 0006954 // inflammatory response // inferred from expression pattern /// 0006954 // inflammatory response // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0030099 // myeloid cell differentiation // inferred from electronic annotation /// 0030099 // myeloid cell differentiation // not recorded /// 0030595 // leukocyte chemotaxis // inferred from electronic annotation /// 0030595 // leukocyte chemotaxis // not recorded /// 0031620 // regulation of fever // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from mutant phenotype /// 0060326 // cell chemotaxis // inferred from expression pattern 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004950 // chemokine receptor activity // inferred by curator /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016493 // C-C chemokine receptor activity // inferred from mutant phenotype /// 0016493 // C-C chemokine receptor activity // not recorded /// 0016493 // C-C chemokine receptor activity // inferred from electronic annotation /// 0019957 // C-C chemokine binding // inferred by curator /// 0019957 // C-C chemokine binding // inferred from mutant phenotype 1370084_at NM_012533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012533.1 /DB_XREF=gi:6978696 /GEN=Cpb /FEA=FLmRNA /CNT=9 /TID=Rn.12780.1 /TIER=FL /STK=3 /UG=Rn.12780 /LL=24271 /DEF=Rattus norvegicus Carboxypeptidase B (Cpb), mRNA. /PROD=carboxypeptidase B /FL=gb:NM_012533.1 NM_012533 carboxypeptidase B1 (tissue) Cpb1 24271 NM_012533 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0004180 // carboxypeptidase activity // inferred from direct assay /// 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370085_at NM_013135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013135.1 /DB_XREF=gi:6981459 /GEN=Rasa1 /FEA=FLmRNA /CNT=9 /TID=Rn.44298.1 /TIER=FL /STK=3 /UG=Rn.44298 /LL=25676 /DEF=Rattus norvegicus RAS p21 protein activator (Rasa1), mRNA. /PROD=RAS p21 protein activator /FL=gb:NM_013135.1 NM_013135 RAS p21 protein activator (GTPase activating protein) 1 Rasa1 25676 NM_013135 0000910 // cytokinesis // inferred from sequence or structural similarity /// 0001570 // vasculogenesis // not recorded /// 0001570 // vasculogenesis // inferred from sequence or structural similarity /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001953 // negative regulation of cell-matrix adhesion // not recorded /// 0001953 // negative regulation of cell-matrix adhesion // inferred from sequence or structural similarity /// 0001953 // negative regulation of cell-matrix adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // non-traceable author statement /// 0007162 // negative regulation of cell adhesion // not recorded /// 0007162 // negative regulation of cell adhesion // inferred from sequence or structural similarity /// 0007162 // negative regulation of cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from sequence or structural similarity /// 0007165 // signal transduction // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0009790 // embryo development // inferred from sequence or structural similarity /// 0009790 // embryo development // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // non-traceable author statement /// 0030833 // regulation of actin filament polymerization // not recorded /// 0030833 // regulation of actin filament polymerization // inferred from sequence or structural similarity /// 0030833 // regulation of actin filament polymerization // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from sequence or structural similarity /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0045768 // positive regulation of anti-apoptosis // not recorded /// 0045768 // positive regulation of anti-apoptosis // inferred from sequence or structural similarity /// 0045768 // positive regulation of anti-apoptosis // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0001726 // ruffle // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0001948 // glycoprotein binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // not recorded /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0051020 // GTPase binding // inferred from electronic annotation /// 0051020 // GTPase binding // not recorded 1370086_at NM_012559 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012559.1 /DB_XREF=gi:6978840 /GEN=Fgg /FEA=FLmRNA /CNT=5 /TID=Rn.1702.1 /TIER=FL /STK=3 /UG=Rn.1702 /LL=24367 /DEF=Rattus norvegicus Fibrinogen, gamma polypeptide (Fgg), mRNA. /PROD=fibrinogen, gamma polypeptide /FL=gb:NM_012559.1 NM_012559 fibrinogen gamma chain Fgg 24367 NM_012559 0006954 // inflammatory response // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation /// 0030168 // platelet activation // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005577 // fibrinogen complex // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0009897 // external side of plasma membrane // not recorded /// 0031091 // platelet alpha granule // not recorded /// 0031093 // platelet alpha granule lumen // not recorded 0005102 // receptor binding // inferred from electronic annotation /// 0030674 // protein binding, bridging // inferred from electronic annotation /// 0043499 // eukaryotic cell surface binding // not recorded 1370087_at NM_031718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031718.1 /DB_XREF=gi:13929005 /GEN=Rab2 /FEA=FLmRNA /CNT=21 /TID=Rn.13878.1 /TIER=FL /STK=2 /UG=Rn.13878 /LL=65158 /DEF=Rattus norvegicus RAB2, member RAS oncogene family (Rab2), mRNA. /PROD=RAB2, member RAS oncogene family /FL=gb:NM_031718.1 NM_031718 RAB2A, member RAS oncogene family Rab2a 65158 NM_031718 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0032482 // Rab protein signal transduction // inferred by curator 0000139 // Golgi membrane // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0033116 // ER-Golgi intermediate compartment membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // not recorded /// 0019003 // GDP binding // inferred from sequence or structural similarity /// 0019003 // GDP binding // inferred from electronic annotation 1370088_at NM_053482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053482.1 /DB_XREF=gi:16758237 /GEN=Sp17 /FEA=FLmRNA /CNT=8 /TID=Rn.29090.1 /TIER=FL /STK=2 /UG=Rn.29090 /LL=85244 /DEF=Rattus norvegicus sperm autoantigenic protein 17 (Sp17), mRNA. /PROD=sperm autoantigenic protein 17 /FL=gb:NM_053482.1 NM_053482 sperm autoantigenic protein 17 Spa17 85244 NM_053482 0007165 // signal transduction // inferred from electronic annotation /// 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0008603 // cAMP-dependent protein kinase regulator activity // inferred from electronic annotation 1370089_at NM_031347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031347.1 /DB_XREF=gi:13786187 /GEN=Ppargc1 /FEA=FLmRNA /CNT=5 /TID=Rn.19172.1 /TIER=FL /STK=2 /UG=Rn.19172 /LL=83516 /DEF=Rattus norvegicus peroxisome proliferative activated receptor, gamma, coactivator 1 (Ppargc1), mRNA. /PROD=peroxisome proliferative activated receptor,gamma, coactivator 1 /FL=gb:NM_031347.1 gb:AB025784.1 NM_031347 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha Ppargc1a 83516 NM_031347 0006350 // transcription // inferred from electronic annotation /// 0007005 // mitochondrion organization // inferred from mutant phenotype /// 0022904 // respiratory electron transport chain // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045722 // positive regulation of gluconeogenesis // traceable author statement /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046321 // positive regulation of fatty acid oxidation // inferred from mutant phenotype /// 0051091 // positive regulation of transcription factor activity // inferred from electronic annotation /// 0051091 // positive regulation of transcription factor activity // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003713 // transcription coactivator activity // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016922 // ligand-dependent nuclear receptor binding // inferred from electronic annotation /// 0016922 // ligand-dependent nuclear receptor binding // not recorded /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from electronic annotation /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded 1370090_at NM_130421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130421.1 /DB_XREF=gi:18426849 /GEN=Lcp2 /FEA=FLmRNA /CNT=5 /TID=Rn.19344.1 /TIER=FL /STK=2 /UG=Rn.19344 /DEF=Rattus norvegicus lymphocyte cytosolic protein 2 (SH2 domain-containing leukocyte protein of 76kD) (Lcp2), mRNA. /PROD=lymphocyte cytosolic protein 2 (SH2domain-containing leukocyte protein of 76kD) /FL=gb:AB072980.1 gb:NM_130421.1 NM_130421 lymphocyte cytosolic protein 2 Lcp2 155918 NM_130421 0045576 // mast cell activation // not recorded /// 0050663 // cytokine secretion // not recorded 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370091_at NM_031036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031036.1 /DB_XREF=gi:13591956 /GEN=Gnaq /FEA=FLmRNA /CNT=5 /TID=Rn.22323.1 /TIER=FL /STK=2 /UG=Rn.22323 /LL=81666 /DEF=Rattus norvegicus heterotrimeric guanine nucleotide-binding protein alpha q subunit (Gnaq), mRNA. /PROD=heterotrimeric guanine nucleotide-bindingprotein alpha q subunit /FL=gb:AF234260.1 gb:NM_031036.1 NM_031036 guanine nucleotide binding protein, alpha q polypeptide Gnaq 81666 NM_031036 0001501 // skeletal system development // not recorded /// 0001508 // regulation of action potential // not recorded /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006471 // protein ADP-ribosylation // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from mutant phenotype /// 0007202 // activation of phospholipase C activity // inferred from mutant phenotype /// 0007215 // glutamate signaling pathway // not recorded /// 0007507 // heart development // not recorded /// 0007610 // behavior // not recorded /// 0009791 // post-embryonic development // not recorded /// 0016322 // neuron remodeling // not recorded /// 0021884 // forebrain neuron development // not recorded /// 0035412 // regulation of catenin protein nuclear translocation // not recorded /// 0042733 // embryonic digit morphogenesis // not recorded /// 0043065 // positive regulation of apoptosis // traceable author statement /// 0043267 // negative regulation of potassium ion transport // inferred from mutant phenotype /// 0045634 // regulation of melanocyte differentiation // not recorded /// 0048066 // developmental pigmentation // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0050821 // protein stabilization // not recorded /// 0060158 // activation of phospholipase C activity by dopamine receptor signaling pathway // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005834 // heterotrimeric G-protein complex // traceable author statement /// 0005886 // plasma membrane // not recorded /// 0005901 // caveola // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1370092_at NM_012757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012757.1 /DB_XREF=gi:6981185 /GEN=Mas1 /FEA=FLmRNA /CNT=4 /TID=Rn.21943.1 /TIER=FL /STK=2 /UG=Rn.21943 /LL=25153 /DEF=Rattus norvegicus MAS1 oncogene (Mas1), mRNA. /PROD=MAS1 oncogene /FL=gb:NM_012757.1 NM_012757 MAS1 oncogene Mas1 25153 NM_012757 0001933 // negative regulation of protein phosphorylation // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008584 // male gonad development // inferred from expression pattern /// 0014823 // response to activity // inferred from expression pattern /// 0021766 // hippocampus development // inferred from expression pattern /// 0034698 // response to gonadotropin stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045740 // positive regulation of DNA replication // inferred from direct assay /// 0060732 // positive regulation of inositol phosphate biosynthetic process // inferred from direct assay /// 0070528 // protein kinase C signaling cascade // inferred from electronic annotation /// 0070528 // protein kinase C signaling cascade // not recorded /// 0071375 // cellular response to peptide hormone stimulus // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001595 // angiotensin receptor activity // inferred from mutant phenotype /// 0001595 // angiotensin receptor activity // not recorded /// 0001595 // angiotensin receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // not recorded /// 0017046 // peptide hormone binding // inferred from mutant phenotype /// 0042277 // peptide binding // not recorded /// 0042277 // peptide binding // inferred from electronic annotation 1370093_at NM_021857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021857.1 /DB_XREF=gi:11177899 /GEN=Htr1eb /FEA=FLmRNA /CNT=4 /TID=Rn.44301.1 /TIER=FL /STK=2 /UG=Rn.44301 /LL=60448 /DEF=Rattus norvegicus serotonin receptor gene (similar to Mm Htr1eb) (Htr1eb), mRNA. /PROD=serotonin receptor gene (similar to Mm Htr1eb) /FL=gb:NM_021857.1 NM_021857 5-hydroxytryptamine (serotonin) receptor 1F Htr1f 60448 NM_021857 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // not recorded /// 0051378 // serotonin binding // inferred from electronic annotation /// 0051378 // serotonin binding // not recorded 1370094_at NM_021747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021747.1 /DB_XREF=gi:11120693 /GEN=Sp10 /FEA=FLmRNA /CNT=4 /TID=Rn.42946.1 /TIER=FL /STK=2 /UG=Rn.42946 /LL=60353 /DEF=Rattus norvegicus sperm protein 10 (Sp10), mRNA. /PROD=sperm protein 10 /FL=gb:NM_021747.1 NM_021747 acrosomal vesicle protein 1 Acrv1 60353 NM_021747 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0001669 // acrosomal vesicle // not recorded 1370095_at NM_021656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021656.1 /DB_XREF=gi:11067370 /GEN=Ltb4r /FEA=FLmRNA /CNT=5 /TID=Rn.41003.1 /TIER=FL /STK=2 /UG=Rn.41003 /LL=59264 /DEF=Rattus norvegicus leukotriene B4 receptor (Ltb4r), mRNA. /PROD=leukotriene B4 receptor /FL=gb:NM_021656.1 NM_021656 leukotriene B4 receptor Ltb4r 59264 NM_021656 0006954 // inflammatory response // inferred from expression pattern /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001632 // leukotriene B4 receptor activity // inferred from electronic annotation /// 0001632 // leukotriene B4 receptor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004974 // leukotriene receptor activity // inferred from direct assay /// 0004974 // leukotriene receptor activity // inferred from electronic annotation 1370096_at NM_017330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017330.1 /DB_XREF=gi:8394154 /GEN=RATCYTA /FEA=FLmRNA /CNT=9 /TID=Rn.11206.1 /TIER=FL /STK=1 /UG=Rn.11206 /LL=50669 /DEF=Rattus norvegicus cytolysin (RATCYTA), mRNA. /PROD=cytolysin /FL=gb:NM_017330.1 gb:M33605.1 NM_017330 perforin 1 (pore forming protein) Prf1 50669 NM_017330 0007623 // circadian rhythm // inferred from mutant phenotype /// 0019835 // cytolysis // not recorded /// 0019835 // cytolysis // traceable author statement /// 0019835 // cytolysis // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370097_a_at U54791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U54791.1 /DB_XREF=gi:1354504 /FEA=FLmRNA /CNT=1 /TID=Rn.44431.2 /TIER=FL /STK=1 /UG=Rn.44431 /LL=60628 /UG_GENE=Cxcr4 /DEF=Rattus norvegicus chemokine receptor LCR1 mRNA, complete cds. /PROD=chemokine receptor LCR1 /FL=gb:U54791.1 U54791 chemokine (C-X-C motif) receptor 4 Cxcr4 60628 NM_022205 0001569 // patterning of blood vessels // not recorded /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0001667 // ameboidal cell migration // not recorded /// 0001667 // ameboidal cell migration // inferred from electronic annotation /// 0001764 // neuron migration // inferred from direct assay /// 0001764 // neuron migration // inferred from mutant phenotype /// 0001764 // neuron migration // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0002064 // epithelial cell development // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007281 // germ cell development // not recorded /// 0007281 // germ cell development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0008038 // neuron recognition // inferred from expression pattern /// 0008045 // motor axon guidance // not recorded /// 0008045 // motor axon guidance // inferred from electronic annotation /// 0008354 // germ cell migration // not recorded /// 0008354 // germ cell migration // inferred from electronic annotation /// 0016477 // cell migration // inferred from mutant phenotype /// 0019059 // initiation of viral infection // not recorded /// 0022029 // telencephalon cell migration // inferred from mutant phenotype /// 0030334 // regulation of cell migration // not recorded /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0042098 // T cell proliferation // not recorded /// 0042098 // T cell proliferation // inferred from electronic annotation /// 0043067 // regulation of programmed cell death // inferred from mutant phenotype /// 0050920 // regulation of chemotaxis // inferred from mutant phenotype /// 0050920 // regulation of chemotaxis // not recorded /// 0051924 // regulation of calcium ion transport // inferred from mutant phenotype /// 0060048 // cardiac muscle contraction // inferred from mutant phenotype 0005768 // endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0030426 // growth cone // not recorded /// 0030426 // growth cone // inferred from electronic annotation /// 0031252 // cell leading edge // not recorded /// 0031410 // cytoplasmic vesicle // not recorded 0003779 // actin binding // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016493 // C-C chemokine receptor activity // traceable author statement /// 0016493 // C-C chemokine receptor activity // inferred from electronic annotation /// 0016494 // C-X-C chemokine receptor activity // traceable author statement /// 0016494 // C-X-C chemokine receptor activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0032027 // myosin light chain binding // not recorded /// 0043130 // ubiquitin binding // not recorded 1370098_at NM_053531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053531.1 /DB_XREF=gi:16758295 /GEN=Sybl1 /FEA=FLmRNA /CNT=7 /TID=Rn.34151.1 /TIER=FL /STK=1 /UG=Rn.34151 /LL=85491 /DEF=Rattus norvegicus synaptobrevin-like 1 (Sybl1), mRNA. /PROD=synaptobrevin-like 1 /FL=gb:NM_053531.1 gb:AF281632.1 NM_053531 vesicle-associated membrane protein 7 Vamp7 85491 NM_053531 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from direct assay /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0006906 // vesicle fusion // inferred from direct assay /// 0006906 // vesicle fusion // not recorded /// 0006911 // phagocytosis, engulfment // inferred from direct assay /// 0008333 // endosome to lysosome transport // inferred from direct assay /// 0008333 // endosome to lysosome transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from direct assay /// 0016192 // vesicle-mediated transport // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0017156 // calcium ion-dependent exocytosis // inferred from direct assay /// 0043308 // eosinophil degranulation // inferred from direct assay /// 0043312 // neutrophil degranulation // inferred from direct assay 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030658 // transport vesicle membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // inferred from electronic annotation /// 0031201 // SNARE complex // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from direct assay /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded /// 0045335 // phagocytic vesicle // not recorded /// 0045335 // phagocytic vesicle // inferred from sequence or structural similarity /// 0045335 // phagocytic vesicle // inferred from electronic annotation 0005515 // protein binding // not recorded 1370099_at NM_022272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022272.1 /DB_XREF=gi:11560092 /GEN=Fbxl2 /FEA=FLmRNA /CNT=9 /TID=Rn.18281.1 /TIER=FL /STK=1 /UG=Rn.18281 /LL=64039 /DEF=Rattus norvegicus F-box protein FBL2 (Fbxl2), mRNA. /PROD=F-box protein FBL2 /FL=gb:AF182443.1 gb:NM_022272.1 NM_022272 F-box and leucine-rich repeat protein 20 Fbxl20 64039 NM_022272 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1370100_at NM_022185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022185.1 /DB_XREF=gi:11559948 /GEN=Pik3r2 /FEA=FLmRNA /CNT=7 /TID=Rn.22497.1 /TIER=FL /STK=1 /UG=Rn.22497 /LL=29741 /DEF=Rattus norvegicus phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (p85 beta) (Pik3r2), mRNA. /PROD=phosphatidylinositol 3-kinase, regulatorysubunit, polypeptide /FL=gb:NM_022185.1 gb:D64046.1 NM_022185 phosphoinositide-3-kinase, regulatory subunit 2 (beta) Pik3r2 29741 NM_022185 0007165 // signal transduction // inferred from electronic annotation /// 0019987 // negative regulation of anti-apoptosis // inferred from electronic annotation /// 0019987 // negative regulation of anti-apoptosis // not recorded /// 0019987 // negative regulation of anti-apoptosis // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005942 // phosphoinositide 3-kinase complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // not recorded /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from sequence or structural similarity /// 0035014 // phosphoinositide 3-kinase regulator activity // inferred from electronic annotation 1370101_at NM_021855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021855.1 /DB_XREF=gi:11177895 /GEN=Crx /FEA=FLmRNA /CNT=6 /TID=Rn.44287.1 /TIER=FL /STK=1 /UG=Rn.44287 /LL=60446 /DEF=Rattus norvegicus cone-rod homeobox protein (Crx), mRNA. /PROD=cone-rod homeobox protein /FL=gb:AF135838.1 gb:NM_021855.1 gb:AB021129.1 NM_021855 cone-rod homeobox Crx 60446 NM_021855 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046534 // positive regulation of photoreceptor cell differentiation // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1370102_at NM_019313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019313.1 /DB_XREF=gi:9506830 /GEN=Kcnn1 /FEA=FLmRNA /CNT=6 /TID=Rn.44422.1 /TIER=FL /STK=1 /UG=Rn.44422 /LL=54261 /DEF=Rattus norvegicus potassium intermediatesmall conductance calcium-activated channel, subfamily N, member 1 (Kcnn1), mRNA. /PROD=potassium intermediatesmall conductancecalcium-activated channel, subfamily N, member 1 /FL=gb:NM_019313.1 gb:AF000973.1 NM_019313 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1 /// potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1-like Kcnn1 /// LOC100360811 100360811 /// 54261 NM_019313 /// XM_002728385 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // not recorded /// 0015269 // calcium-activated potassium channel activity // inferred from electronic annotation /// 0016286 // small conductance calcium-activated potassium channel activity // inferred from electronic annotation 1370103_at NM_053375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053375.1 /DB_XREF=gi:16758107 /GEN=Hcn1 /FEA=FLmRNA /CNT=5 /TID=Rn.21408.1 /TIER=FL /STK=1 /UG=Rn.21408 /LL=84390 /DEF=Rattus norvegicus hyperpolarization-activated, cyclic nucleotide-gated potassium channel 1 (HCN1) (Hcn1), mRNA. /PROD=hyperpolarization-activated, cyclicnucleotide-gated potassium c /FL=gb:NM_053375.1 gb:AF247450.1 NM_053375 hyperpolarization-activated cyclic nucleotide-gated potassium channel 1 Hcn1 84390 NM_053375 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0045176 // apical protein localization // inferred from electronic annotation /// 0045176 // apical protein localization // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030552 // cAMP binding // inferred from electronic annotation 1370104_at NM_053688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053688.1 /DB_XREF=gi:16758507 /GEN=Pde6g /FEA=FLmRNA /CNT=5 /TID=Rn.21249.1 /TIER=FL /STK=1 /UG=Rn.21249 /LL=114248 /DEF=Rattus norvegicus phosphodiesterase 6G, cGMP-specific, rod, gamma (Pde6g), mRNA. /PROD=phosphodiesterase 6G, cGMP-specific, rod, gamma /FL=gb:NM_053688.1 gb:AF169390.1 NM_053688 phosphodiesterase 6H, cGMP-specific, cone, gamma Pde6h 114248 NM_053688 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0007601 // visual perception // inferred from electronic annotation /// 0045742 // positive regulation of epidermal growth factor receptor signaling pathway // inferred from electronic annotation /// 0045742 // positive regulation of epidermal growth factor receptor signaling pathway // not recorded /// 0045745 // positive regulation of G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0045745 // positive regulation of G-protein coupled receptor protein signaling pathway // not recorded /// 0050896 // response to stimulus // inferred from electronic annotation 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030553 // cGMP binding // inferred from electronic annotation 1370105_at NM_133393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133393.1 /DB_XREF=gi:19173747 /GEN=Lfng /FEA=FLmRNA /CNT=5 /TID=Rn.65477.1 /TIER=FL /STK=1 /UG=Rn.65477 /DEF=Rattus norvegicus lunatic fringe gene homolog (Drosophila) (Lfng), mRNA. /PROD=lunatic fringe gene homolog (Drosophila) /FL=gb:AB054539.1 gb:NM_133393.1 NM_133393 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase Lfng 170905 NM_133393 0001541 // ovarian follicle development // inferred from electronic annotation /// 0001541 // ovarian follicle development // not recorded /// 0007143 // female meiosis // inferred from electronic annotation /// 0007143 // female meiosis // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007386 // compartment pattern formation // inferred from electronic annotation /// 0007386 // compartment pattern formation // not recorded /// 0007389 // pattern specification process // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0033829 // O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity // inferred from electronic annotation 1370106_at NM_019199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019199.1 /DB_XREF=gi:9506594 /GEN=Fgf18 /FEA=FLmRNA /CNT=5 /TID=Rn.44478.1 /TIER=FL /STK=1 /UG=Rn.44478 /LL=29369 /DEF=Rattus norvegicus fibroblast growth factor 18 (Fgf18), mRNA. /PROD=fibroblast growth factor 18 /FL=gb:AB004638.1 gb:NM_019199.1 NM_019199 fibroblast growth factor 18 Fgf18 29369 NM_019199 0001503 // ossification // not recorded /// 0001525 // angiogenesis // not recorded /// 0001957 // intramembranous ossification // not recorded /// 0001958 // endochondral ossification // not recorded /// 0002063 // chondrocyte development // not recorded /// 0007399 // nervous system development // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0030324 // lung development // not recorded /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0032332 // positive regulation of chondrocyte differentiation // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005730 // nucleolus // not recorded 0005104 // fibroblast growth factor receptor binding // non-traceable author statement /// 0005105 // type 1 fibroblast growth factor receptor binding // not recorded /// 0005111 // type 2 fibroblast growth factor receptor binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation 1370107_at NM_054009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_054009.1 /DB_XREF=gi:16758929 /GEN=Ctrl /FEA=FLmRNA /CNT=4 /TID=Rn.63352.1 /TIER=FL /STK=1 /UG=Rn.63352 /LL=117184 /DEF=Rattus norvegicus chymotrypsin-like (Ctrl), mRNA. /PROD=chymotrypsin-like /FL=gb:NM_054009.1 gb:AB020757.1 NM_054009 chymotrypsin-like Ctrl 117184 NM_054009 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008236 // serine-type peptidase activity // inferred from direct assay /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1370108_a_at AF090134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF090134.1 /DB_XREF=gi:3885829 /FEA=FLmRNA /CNT=1 /TID=Rn.31766.2 /TIER=FL /STK=1 /UG=Rn.31766 /LL=85327 /UG_GENE=Veli1 /DEF=Rattus norvegicus lin-7-Ba mRNA, complete cds. /PROD=lin-7-Ba /FL=gb:AF090134.1 AF090134 lin-7 homolog a (C. elegans) Lin7a 85327 NM_053514 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0048489 // synaptic vesicle transport // inferred from electronic annotation /// 0048489 // synaptic vesicle transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction 1370109_s_at NM_033539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_033539.1 /DB_XREF=gi:15805030 /GEN=Eef1a2 /FEA=FLmRNA /CNT=4 /TID=Rn.82706.1 /TIER=FL /STK=1 /UG=Rn.82706 /LL=29652 /DEF=Rattus norvegicus eukaryotic translation elongation factor 1 alpha 2 (Eef1a2), mRNA. /PROD=eukaryotic translation elongation factor 1 alpha2 /FL=gb:NM_033539.1 gb:L10339.1 NM_033539 eukaryotic translation elongation factor 1 alpha 1 /// eukaryotic translation elongation factor 1 alpha 2 /// eukaryotic translation elongation factor 1 alpha 1-like Eef1a1 /// LOC100360150 /// LOC100360413 100360150 /// 100360413 /// 171361 NM_175838 /// XM_002725647 /// XM_002725648 /// XM_002729220 /// XM_002730308 /// XM_002730309 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0006414 // translational elongation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0043025 // neuronal cell body // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1370110_at NM_053804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053804.2 /DB_XREF=gi:18034770 /GEN=Kcnk4 /FEA=FLmRNA /CNT=5 /TID=Rn.46453.1 /TIER=FL /STK=1 /UG=Rn.46453 /LL=116489 /DEF=Rattus norvegicus potassium inwardly-rectifying channel, subfamily K, member 4 (Kcnk4), mRNA. /PROD=potassium inwardly-rectifying channel, subfamilyK, member 4 /FL=gb:NM_053804.2 gb:AF302842.2 NM_053804 potassium channel, subfamily K, member 4 Kcnk4 116489 NM_053804 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from direct assay /// 0005267 // potassium channel activity // inferred from electronic annotation 1370111_at NM_019314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019314.1 /DB_XREF=gi:9506832 /GEN=Kcnn2 /FEA=FLmRNA /CNT=4 /TID=Rn.44421.1 /TIER=FL /STK=1 /UG=Rn.44421 /LL=54262 /DEF=Rattus norvegicus potassium intermediatesmall conductance calcium-activated channel, subfamily N, member 2 (Kcnn2), mRNA. /PROD=potassium intermediatesmall conductancecalcium-activated channel, subfamily N, member 2 /FL=gb:NM_019314.1 gb:U69882.1 NM_019314 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2 Kcnn2 54262 NM_019314 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from direct assay /// 0006813 // potassium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0015269 // calcium-activated potassium channel activity // inferred from electronic annotation /// 0016286 // small conductance calcium-activated potassium channel activity // inferred from direct assay /// 0016286 // small conductance calcium-activated potassium channel activity // inferred from electronic annotation 1370112_at NM_031606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031606.1 /DB_XREF=gi:13928829 /GEN=Pten /FEA=FLmRNA /CNT=4 /TID=Rn.22158.1 /TIER=FL /STK=1 /UG=Rn.22158 /LL=50557 /DEF=Rattus norvegicus phosphatase and tensin homolog (mutated in multiple advanced cancers 1) (Pten), mRNA. /PROD=phosphatase and tensin homolog /FL=gb:AF017185.1 gb:NM_031606.1 NM_031606 phosphatase and tensin homolog Pten 50557 NM_031606 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0001933 // negative regulation of protein phosphorylation // not recorded /// 0002902 // regulation of B cell apoptosis // inferred from electronic annotation /// 0002902 // regulation of B cell apoptosis // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0006917 // induction of apoptosis // traceable author statement /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0007613 // memory // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010043 // response to zinc ion // inferred from expression pattern /// 0010975 // regulation of neuron projection development // inferred from electronic annotation /// 0010975 // regulation of neuron projection development // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // not recorded /// 0030336 // negative regulation of cell migration // traceable author statement /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from direct assay /// 0031647 // regulation of protein stability // inferred from electronic annotation /// 0031647 // regulation of protein stability // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0033032 // regulation of myeloid cell apoptosis // inferred from electronic annotation /// 0033032 // regulation of myeloid cell apoptosis // not recorded /// 0033198 // response to ATP // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043542 // endothelial cell migration // inferred from electronic annotation /// 0043542 // endothelial cell migration // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0046685 // response to arsenic // inferred from expression pattern /// 0046855 // inositol phosphate dephosphorylation // inferred from electronic annotation /// 0046855 // inositol phosphate dephosphorylation // not recorded /// 0046856 // phosphoinositide dephosphorylation // inferred from mutant phenotype /// 0046856 // phosphoinositide dephosphorylation // not recorded /// 0046856 // phosphoinositide dephosphorylation // inferred from electronic annotation /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from direct assay /// 0048738 // cardiac muscle tissue development // inferred from electronic annotation /// 0048738 // cardiac muscle tissue development // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050765 // negative regulation of phagocytosis // inferred from mutant phenotype /// 0050821 // protein stabilization // not recorded /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded /// 0051895 // negative regulation of focal adhesion assembly // inferred from electronic annotation /// 0051895 // negative regulation of focal adhesion assembly // not recorded /// 0051898 // negative regulation of protein kinase B signaling cascade // inferred from electronic annotation /// 0051898 // negative regulation of protein kinase B signaling cascade // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060292 // long term synaptic depression // inferred from mutant phenotype /// 0060736 // prostate gland growth // inferred from electronic annotation /// 0060736 // prostate gland growth // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0019717 // synaptosome // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from direct assay 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from direct assay /// 0004438 // phosphatidylinositol-3-phosphatase activity // inferred from electronic annotation /// 0004438 // phosphatidylinositol-3-phosphatase activity // not recorded /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0005161 // platelet-derived growth factor receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // traceable author statement /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016314 // phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity // inferred from mutant phenotype /// 0016314 // phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity // not recorded /// 0016314 // phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0030165 // PDZ domain binding // not recorded /// 0030165 // PDZ domain binding // inferred from electronic annotation /// 0051717 // inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity // inferred from electronic annotation /// 0051717 // inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity // not recorded /// 0051800 // phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity // inferred from electronic annotation /// 0051800 // phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity // not recorded 1370113_at NM_023987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023987.1 /DB_XREF=gi:13027445 /GEN=Birc2 /FEA=FLmRNA /CNT=4 /TID=Rn.64578.1 /TIER=FL /STK=1 /UG=Rn.64578 /LL=78971 /DEF=Rattus norvegicus inhibitor of apoptosis protein 1 (Birc2), mRNA. /PROD=inhibitor of apoptosis protein 1 /FL=gb:NM_023987.1 gb:AF183430.1 NM_023987 baculoviral IAP repeat-containing 3 Birc3 78971 NM_023987 0006916 // anti-apoptosis // non-traceable author statement /// 0007283 // spermatogenesis // inferred from expression pattern /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from physical interaction 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370114_a_at D64048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D64048.1 /DB_XREF=gi:1246393 /FEA=FLmRNA /CNT=1 /TID=Rn.10599.3 /TIER=FL /STK=1 /UG=Rn.10599 /LL=25513 /UG_GENE=Pik3r1 /DEF=Rattus norvegicus mRNA for phosphatidylinositol 3-kinase p45 subunit, complete cds. /PROD=phosphatidylinositol 3-kinase p45 subunit /FL=gb:D64048.1 D64048 phosphoinositide-3-kinase, regulatory subunit 1 (alpha) Pik3r1 25513 NM_013005 0001878 // response to yeast // inferred from expression pattern /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0001953 // negative regulation of cell-matrix adhesion // inferred from electronic annotation /// 0001953 // negative regulation of cell-matrix adhesion // not recorded /// 0006006 // glucose metabolic process // inferred from mutant phenotype /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008286 // insulin receptor signaling pathway // inferred from mutant phenotype /// 0008286 // insulin receptor signaling pathway // not recorded /// 0008286 // insulin receptor signaling pathway // inferred from sequence or structural similarity /// 0009750 // response to fructose stimulus // inferred from expression pattern /// 0010040 // response to iron(II) ion // inferred from expression pattern /// 0010459 // negative regulation of heart rate // inferred from mutant phenotype /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0014065 // phosphoinositide 3-kinase cascade // not recorded /// 0022408 // negative regulation of cell-cell adhesion // inferred from mutant phenotype /// 0030183 // B cell differentiation // inferred from electronic annotation /// 0030183 // B cell differentiation // not recorded /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030335 // positive regulation of cell migration // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0032868 // response to insulin stimulus // inferred from direct assay /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043551 // regulation of phosphoinositide 3-kinase activity // inferred from direct assay /// 0045471 // response to ethanol // inferred from expression pattern /// 0045663 // positive regulation of myoblast differentiation // inferred from mutant phenotype /// 0045671 // negative regulation of osteoclast differentiation // inferred from electronic annotation /// 0045671 // negative regulation of osteoclast differentiation // not recorded /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0045861 // negative regulation of proteolysis // inferred from mutant phenotype /// 0046854 // phosphoinositide phosphorylation // inferred from sequence or structural similarity /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from mutant phenotype /// 0048009 // insulin-like growth factor receptor signaling pathway // not recorded /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0051384 // response to glucocorticoid stimulus // inferred from direct assay /// 0051591 // response to cAMP // inferred from direct assay /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0060396 // growth hormone receptor signaling pathway // not recorded /// 0070542 // response to fatty acid // inferred from expression pattern /// 0070848 // response to growth factor stimulus // inferred from expression pattern /// 0071398 // cellular response to fatty acid // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern /// 0071548 // response to dexamethasone stimulus // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005942 // phosphoinositide 3-kinase complex // inferred from direct assay /// 0005942 // phosphoinositide 3-kinase complex // inferred from electronic annotation /// 0005942 // phosphoinositide 3-kinase complex // traceable author statement /// 0005943 // 1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex // inferred from sequence or structural similarity /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005102 // receptor binding // inferred from physical interaction /// 0005158 // insulin receptor binding // not recorded /// 0005158 // insulin receptor binding // inferred from sequence or structural similarity /// 0005159 // insulin-like growth factor receptor binding // not recorded /// 0005159 // insulin-like growth factor receptor binding // inferred from sequence or structural similarity /// 0005161 // platelet-derived growth factor receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from direct assay /// 0016303 // 1-phosphatidylinositol-3-kinase activity // traceable author statement /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019903 // protein phosphatase binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030331 // estrogen receptor binding // inferred from physical interaction /// 0030971 // receptor tyrosine kinase binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0035014 // phosphoinositide 3-kinase regulator activity // inferred from electronic annotation /// 0035014 // phosphoinositide 3-kinase regulator activity // inferred from sequence or structural similarity /// 0043125 // ErbB-3 class receptor binding // not recorded /// 0043125 // ErbB-3 class receptor binding // inferred from sequence or structural similarity /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction /// 0043559 // insulin binding // not recorded /// 0043560 // insulin receptor substrate binding // inferred from physical interaction /// 0043560 // insulin receptor substrate binding // not recorded /// 0043560 // insulin receptor substrate binding // inferred from sequence or structural similarity /// 0046935 // 1-phosphatidylinositol-3-kinase regulator activity // inferred from direct assay /// 0051117 // ATPase binding // inferred from physical interaction /// 0051219 // phosphoprotein binding // inferred from physical interaction 1370115_at NM_053726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053726.1 /DB_XREF=gi:17865348 /GEN=Slc7a10 /FEA=FLmRNA /CNT=3 /TID=Rn.81034.1 /TIER=FL /STK=1 /UG=Rn.81034 /LL=114518 /DEF=Rattus norvegicus solute carrier family 7, (cationic amino acid transporter, y+ system) member 10 (Slc7a10), mRNA. /PROD=solute carrier family 7, (cationic amino acidtransporter, y+ system) member 10 /FL=gb:NM_053726.1 NM_053726 solute carrier family 7, (neutral amino acid transporter, y+ system) member 10 Slc7a10 114518 NM_053726 0003333 // amino acid transmembrane transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded /// 0006865 // amino acid transport // inferred from electronic annotation /// 0015804 // neutral amino acid transport // not recorded /// 0015804 // neutral amino acid transport // inferred from sequence or structural similarity /// 0015804 // neutral amino acid transport // inferred from electronic annotation /// 0015825 // L-serine transport // traceable author statement /// 0042941 // D-alanine transport // inferred from electronic annotation /// 0042941 // D-alanine transport // not recorded /// 0042942 // D-serine transport // not recorded /// 0042942 // D-serine transport // traceable author statement /// 0042942 // D-serine transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015175 // neutral amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015175 // neutral amino acid transmembrane transporter activity // not recorded /// 0015175 // neutral amino acid transmembrane transporter activity // inferred from sequence or structural similarity /// 0015194 // L-serine transmembrane transporter activity // traceable author statement /// 0042945 // D-serine transmembrane transporter activity // traceable author statement 1370116_at NM_019375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019375.1 /DB_XREF=gi:9507084 /GEN=Sept3 /FEA=FLmRNA /CNT=3 /TID=Rn.48803.1 /TIER=FL /STK=1 /UG=Rn.48803 /LL=56003 /DEF=Rattus norvegicus septin 3 (Sept3), mRNA. /PROD=G-septin alpha /FL=gb:NM_019375.1 gb:AF111179.1 NM_019375 septin 3 Sept3 56003 NM_019375 0007049 // cell cycle // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0031105 // septin complex // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation 1370117_at NM_133286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133286.1 /DB_XREF=gi:18959219 /GEN=Fgf8 /FEA=FLmRNA /CNT=3 /TID=Rn.73565.1 /TIER=FL /STK=1 /UG=Rn.73565 /DEF=Rattus norvegicus fibroblast growth factor 8 (androgen-induced) (Fgf8), mRNA. /PROD=fibroblast growth factor 8 /FL=gb:NM_133286.1 gb:AB079113.1 NM_133286 fibroblast growth factor 8 Fgf8 29349 NM_133286 0000165 // MAPKKK cascade // not recorded /// 0001569 // patterning of blood vessels // not recorded /// 0001656 // metanephros development // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001759 // organ induction // not recorded /// 0001822 // kidney development // not recorded /// 0001823 // mesonephros development // not recorded /// 0001839 // neural plate morphogenesis // not recorded /// 0001947 // heart looping // not recorded /// 0001974 // blood vessel remodeling // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0006915 // apoptosis // not recorded /// 0006979 // response to oxidative stress // inferred from direct assay /// 0007368 // determination of left/right symmetry // not recorded /// 0007507 // heart development // not recorded /// 0008045 // motor axon guidance // inferred from mutant phenotype /// 0008078 // mesodermal cell migration // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008406 // gonad development // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0009792 // embryo development ending in birth or egg hatching // not recorded /// 0010628 // positive regulation of gene expression // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0021537 // telencephalon development // not recorded /// 0021543 // pallium development // not recorded /// 0021544 // subpallium development // not recorded /// 0021798 // forebrain dorsal/ventral pattern formation // not recorded /// 0021846 // cell proliferation in forebrain // not recorded /// 0021884 // forebrain neuron development // inferred from mutant phenotype /// 0021954 // central nervous system neuron development // inferred from mutant phenotype /// 0030324 // lung development // not recorded /// 0030539 // male genitalia development // not recorded /// 0030916 // otic vesicle formation // not recorded /// 0030917 // midbrain-hindbrain boundary development // not recorded /// 0033563 // dorsal/ventral axon guidance // inferred from mutant phenotype /// 0035050 // embryonic heart tube development // not recorded /// 0035108 // limb morphogenesis // not recorded /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0042476 // odontogenesis // inferred from expression pattern /// 0042476 // odontogenesis // not recorded /// 0042487 // regulation of odontogenesis of dentine-containing tooth // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045840 // positive regulation of mitosis // not recorded /// 0048699 // generation of neurons // not recorded /// 0048853 // forebrain morphogenesis // not recorded /// 0060128 // adrenocorticotropin hormone secreting cell differentiation // not recorded /// 0060129 // thyroid-stimulating hormone-secreting cell differentiation // not recorded /// 0060348 // bone development // not recorded /// 0060425 // lung morphogenesis // not recorded /// 0060445 // branching involved in salivary gland morphogenesis // not recorded /// 0060563 // neuroepithelial cell differentiation // not recorded /// 0071542 // dopaminergic neuron differentiation // not recorded /// 0090134 // cell migration involved in mesendoderm migration // not recorded 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // not recorded /// 0005625 // soluble fraction // not recorded /// 0009897 // external side of plasma membrane // inferred from direct assay 0005105 // type 1 fibroblast growth factor receptor binding // not recorded /// 0005111 // type 2 fibroblast growth factor receptor binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0042056 // chemoattractant activity // inferred from mutant phenotype 1370118_at NM_057151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057151.1 /DB_XREF=gi:16924013 /GEN=Scya17 /FEA=FLmRNA /CNT=3 /TID=Rn.46679.1 /TIER=FL /STK=1 /UG=Rn.46679 /LL=117518 /DEF=Rattus norvegicus small inducible cytokine subfamily A (Cys-Cys), member 17 (Scya17), mRNA. /PROD=small inducible cytokine subfamily A (Cys-Cys),member 17 /FL=gb:AF312687.1 gb:NM_057151.1 NM_057151 chemokine (C-C motif) ligand 17 Ccl17 117518 NM_057151 0006955 // immune response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annotation 1370119_at NM_022634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022634.1 /DB_XREF=gi:12018329 /GEN=Lst1 /FEA=FLmRNA /CNT=3 /TID=Rn.48755.1 /TIER=FL /STK=1 /UG=Rn.48755 /LL=64569 /DEF=Rattus norvegicus leucocyte specific transcript 1 (Lst1), mRNA. /PROD=leucocyte specific transcript 1 /FL=gb:AF208230.1 gb:NM_022634.1 NM_022634 leukocyte specific transcript 1 Lst1 64569 NM_022634 0000902 // cell morphogenesis // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0016358 // dendrite development // not recorded /// 0050672 // negative regulation of lymphocyte proliferation // not recorded 0005737 // cytoplasm // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0005515 // protein binding // not recorded 1370120_at NM_053629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053629.1 /DB_XREF=gi:16758957 /GEN=Fstl3 /FEA=FLmRNA /CNT=12 /TID=Rn.48835.1 /TIER=FL /STK=0 /UG=Rn.48835 /LL=114031 /DEF=Rattus norvegicus follistatin-like 3 (Fstl3), mRNA. /PROD=follistatin-like 3 /FL=gb:NM_053629.1 gb:AB021295.1 NM_053629 follistatin-like 3 (secreted glycoprotein) Fstl3 114031 NM_053629 0001503 // ossification // inferred from electronic annotation /// 0002244 // hemopoietic progenitor cell differentiation // inferred from electronic annotation /// 0002244 // hemopoietic progenitor cell differentiation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0007283 // spermatogenesis // non-traceable author statement /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0022409 // positive regulation of cell-cell adhesion // inferred from electronic annotation /// 0022409 // positive regulation of cell-cell adhesion // not recorded /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0032926 // negative regulation of activin receptor signaling pathway // inferred from electronic annotation /// 0032926 // negative regulation of activin receptor signaling pathway // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045671 // negative regulation of osteoclast differentiation // inferred from electronic annotation /// 0045671 // negative regulation of osteoclast differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0090101 // negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway // not recorded /// 0090101 // negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0030141 // stored secretory granule // inferred from mutant phenotype 0001968 // fibronectin binding // inferred from electronic annotation /// 0001968 // fibronectin binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0048185 // activin binding // inferred from electronic annotation /// 0048185 // activin binding // not recorded 1370121_at NM_016990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_016990.1 /DB_XREF=gi:8850210 /GEN=Add1 /FEA=FLmRNA /CNT=10 /TID=Rn.5788.1 /TIER=FL /STK=0 /UG=Rn.5788 /LL=24170 /DEF=Rattus norvegicus Adducin 1, alpha (Add1), mRNA. /PROD=adducin 1, alpha /FL=gb:NM_016990.1 NM_016990 adducin 1 (alpha) Add1 24170 NM_016990 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006811 // ion transport // non-traceable author statement /// 0006884 // cell volume homeostasis // inferred from electronic annotation /// 0006884 // cell volume homeostasis // not recorded /// 0007010 // cytoskeleton organization // traceable author statement /// 0020027 // hemoglobin metabolic process // inferred from electronic annotation /// 0020027 // hemoglobin metabolic process // not recorded /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // not recorded /// 0032092 // positive regulation of protein binding // not recorded /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // not recorded /// 0051016 // barbed-end actin filament capping // not recorded /// 0051017 // actin filament bundle assembly // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005856 // cytoskeleton // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008290 // F-actin capping protein complex // not recorded /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005198 // structural molecule activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0030507 // spectrin binding // not recorded /// 0042608 // T cell receptor binding // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0051015 // actin filament binding // not recorded 1370122_at NM_053459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053459.1 /DB_XREF=gi:16758201 /GEN=Rab27b /FEA=FLmRNA /CNT=9 /TID=Rn.45331.1 /TIER=FL /STK=0 /UG=Rn.45331 /LL=84590 /DEF=Rattus norvegicus RAB27B, member RAS oncogene family (Rab27b), mRNA. /PROD=RAB27B, member RAS oncogene family /FL=gb:NM_053459.1 gb:AF325693.1 NM_053459 ras-related protein Rab-27B-like /// RAB27B, member RAS oncogene family LOC363410 /// Rab27b 363410 /// 84590 NM_053459 /// XR_086359 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0017157 // regulation of exocytosis // inferred from direct assay 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0042589 // zymogen granule membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0005525 // GTP binding // inferred from electronic annotation 1370123_a_at AF054618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF054618.1 /DB_XREF=gi:2996043 /FEA=FLmRNA /CNT=1 /TID=Rn.4094.2 /TIER=FL /STK=1 /UG=Rn.4094 /LL=60465 /UG_GENE=Cttnb /DEF=Rattus norvegicus cortactin isoform C mRNA, complete cds. /PROD=cortactin isoform C /FL=gb:AF054618.1 AF054618 cortactin Cttn 60465 NM_021868 0006898 // receptor-mediated endocytosis // inferred from direct assay 0001726 // ruffle // not recorded /// 0005737 // cytoplasm // not recorded /// 0005938 // cell cortex // not recorded /// 0030027 // lamellipodium // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1370124_at NM_053968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053968.1 /DB_XREF=gi:16758857 /GEN=Mt3 /FEA=FLmRNA /CNT=7 /TID=Rn.11325.1 /TIER=FL /STK=0 /UG=Rn.11325 /LL=117038 /DEF=Rattus norvegicus metallothionein 3 (Mt3), mRNA. /PROD=metallothionein 3 /FL=gb:NM_053968.1 NM_053968 metallothionein 3 Mt3 117038 NM_053968 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from sequence or structural similarity /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0006875 // cellular metal ion homeostasis // inferred from electronic annotation /// 0006875 // cellular metal ion homeostasis // not recorded /// 0019430 // removal of superoxide radicals // not recorded /// 0019430 // removal of superoxide radicals // inferred from sequence or structural similarity /// 0019430 // removal of superoxide radicals // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // non-traceable author statement /// 0050768 // negative regulation of neurogenesis // not recorded /// 0050768 // negative regulation of neurogenesis // non-traceable author statement /// 0050768 // negative regulation of neurogenesis // inferred from electronic annotation /// 0050774 // negative regulation of dendrite morphogenesis // non-traceable author statement 0008021 // synaptic vesicle // not recorded /// 0008021 // synaptic vesicle // inferred from sequence or structural similarity /// 0008021 // synaptic vesicle // inferred from electronic annotation 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // not recorded 1370125_at NM_019189 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019189.1 /DB_XREF=gi:9506518 /GEN=Crtl1 /FEA=FLmRNA /CNT=7 /TID=Rn.49048.1 /TIER=FL /STK=0 /UG=Rn.49048 /LL=29331 /DEF=Rattus norvegicus cartilage link protein 1 (Crtl1), mRNA. /PROD=cartilage link protein 1 /FL=gb:NM_019189.1 NM_019189 hyaluronan and proteoglycan link protein 1 Hapln1 29331 NM_019189 0007155 // cell adhesion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0031012 // extracellular matrix // not recorded 0005198 // structural molecule activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // traceable author statement /// 0005540 // hyaluronic acid binding // inferred from electronic annotation 1370126_at NM_012729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012729.1 /DB_XREF=gi:6981421 /GEN=Prss2 /FEA=FLmRNA /CNT=7 /TID=Rn.1584.1 /TIER=FL /STK=0 /UG=Rn.1584 /LL=25052 /DEF=Rattus norvegicus Pancreatic trypsin II (Prss2), mRNA. /PROD=pancreatic trypsin II /FL=gb:NM_012729.1 NM_012729 protease, serine, 2 Prss2 25052 NM_012729 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // inferred from sequence or structural similarity /// 0007584 // response to nutrient // inferred from expression pattern /// 0007586 // digestion // traceable author statement /// 0007586 // digestion // inferred from electronic annotation /// 0030574 // collagen catabolic process // not recorded /// 0030574 // collagen catabolic process // inferred from sequence or structural similarity 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370127_at NM_021662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021662.1 /DB_XREF=gi:11067380 /GEN=Pold1 /FEA=FLmRNA /CNT=6 /TID=Rn.41585.1 /TIER=FL /STK=0 /UG=Rn.41585 /LL=59294 /DEF=Rattus norvegicus DNA polymerase delta, catalytic subunit (Pold1), mRNA. /PROD=DNA polymerase delta, catalytic subunit /FL=gb:NM_021662.1 NM_021662 polymerase (DNA directed), delta 1, catalytic subunit Pold1 59294 NM_021662 0000084 // S phase of mitotic cell cycle // not recorded /// 0000731 // DNA synthesis involved in DNA repair // not recorded /// 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006260 // DNA replication // not recorded /// 0006260 // DNA replication // inferred from electronic annotation /// 0006261 // DNA-dependent DNA replication // inferred from direct assay /// 0006261 // DNA-dependent DNA replication // inferred from mutant phenotype /// 0006287 // base-excision repair, gap-filling // inferred from electronic annotation /// 0006287 // base-excision repair, gap-filling // not recorded /// 0006297 // nucleotide-excision repair, DNA gap filling // not recorded /// 0045004 // DNA replication proofreading // inferred from electronic annotation /// 0045004 // DNA replication proofreading // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0043625 // delta DNA polymerase complex // inferred by curator 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003887 // DNA-directed DNA polymerase activity // inferred from direct assay /// 0003887 // DNA-directed DNA polymerase activity // inferred from mutant phenotype /// 0003887 // DNA-directed DNA polymerase activity // not recorded /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008408 // 3'-5' exonuclease activity // inferred from electronic annotation /// 0008408 // 3'-5' exonuclease activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370128_at NM_021592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021592.1 /DB_XREF=gi:11024669 /GEN=Hand1 /FEA=FLmRNA /CNT=8 /TID=Rn.39340.1 /TIER=FL /STK=0 /UG=Rn.39340 /LL=59112 /DEF=Rattus norvegicus eHand protein (Hand1), mRNA. /PROD=eHand protein /FL=gb:NM_021592.1 NM_021592 heart and neural crest derivatives expressed 1 Hand1 59112 NM_021592 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001525 // angiogenesis // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0001707 // mesoderm formation // not recorded /// 0001824 // blastocyst development // inferred from electronic annotation /// 0001824 // blastocyst development // not recorded /// 0001829 // trophectodermal cell differentiation // inferred from electronic annotation /// 0001829 // trophectodermal cell differentiation // not recorded /// 0001947 // heart looping // not recorded /// 0003218 // cardiac left ventricle formation // inferred from electronic annotation /// 0003218 // cardiac left ventricle formation // not recorded /// 0003219 // cardiac right ventricle formation // inferred from electronic annotation /// 0003219 // cardiac right ventricle formation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0030154 // cell differentiation // not recorded /// 0035050 // embryonic heart tube development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0060411 // cardiac septum morphogenesis // inferred from electronic annotation /// 0060411 // cardiac septum morphogenesis // not recorded /// 0060707 // trophoblast giant cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // traceable author statement /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0043425 // bHLH transcription factor binding // inferred from electronic annotation /// 0043425 // bHLH transcription factor binding // not recorded /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // traceable author statement 1370129_at NM_131904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_131904.1 /DB_XREF=gi:18777746 /GEN=Mgea5 /FEA=FLmRNA /CNT=6 /TID=Rn.38577.1 /TIER=FL /STK=0 /UG=Rn.38577 /DEF=Rattus norvegicus meningioma expressed antigen 5 (hyaluronidase) (Mgea5), mRNA. /PROD=meningioma expressed antigen 5 (hyaluronidase) /FL=gb:NM_131904.1 gb:AY039679.1 NM_131904 meningioma expressed antigen 5 (hyaluronidase) Mgea5 154968 NM_131904 0006044 // N-acetylglucosamine metabolic process // inferred from mutant phenotype /// 0006612 // protein targeting to membrane // inferred from mutant phenotype /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from mutant phenotype /// 0010616 // negative regulation of cardiac muscle adaptation // inferred from mutant phenotype /// 0031343 // positive regulation of cell killing // inferred from mutant phenotype /// 0032024 // positive regulation of insulin secretion // inferred from mutant phenotype /// 0043243 // positive regulation of protein complex disassembly // inferred from mutant phenotype /// 0045862 // positive regulation of proteolysis // inferred from mutant phenotype /// 0046060 // dATP metabolic process // inferred from mutant phenotype /// 0046326 // positive regulation of glucose import // inferred from mutant phenotype /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0051054 // positive regulation of DNA metabolic process // inferred from mutant phenotype /// 0051901 // positive regulation of mitochondrial depolarization // inferred from mutant phenotype /// 0051928 // positive regulation of calcium ion transport // inferred from mutant phenotype /// 0060051 // negative regulation of protein glycosylation // inferred from mutant phenotype /// 0060124 // positive regulation of growth hormone secretion // inferred from mutant phenotype /// 0070265 // necrotic cell death // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from mutant phenotype /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004563 // beta-N-acetylhexosaminidase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016231 // beta-N-acetylglucosaminidase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation 1370130_at NM_057132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057132.1 /DB_XREF=gi:16923985 /GEN=Arha2 /FEA=FLmRNA /CNT=6 /TID=Rn.17947.1 /TIER=FL /STK=0 /UG=Rn.17947 /LL=117273 /DEF=Rattus norvegicus plysia ras-related homolog A2 (Arha2), mRNA. /PROD=plysia ras-related homolog A2 /FL=gb:AY026069.1 gb:AY026068.1 gb:NM_057132.1 NM_057132 ras homolog gene family, member A Rhoa 117273 NM_057132 0000902 // cell morphogenesis // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0006184 // GTP catabolic process // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0007155 // cell adhesion // not recorded /// 0007160 // cell-matrix adhesion // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0008064 // regulation of actin polymerization or depolymerization // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0030036 // actin cytoskeleton organization // not recorded /// 0030036 // actin cytoskeleton organization // traceable author statement /// 0030154 // cell differentiation // not recorded /// 0030307 // positive regulation of cell growth // inferred from expression pattern /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0030335 // positive regulation of cell migration // inferred from expression pattern /// 0030521 // androgen receptor signaling pathway // not recorded /// 0030838 // positive regulation of actin filament polymerization // inferred from mutant phenotype /// 0031098 // stress-activated protein kinase signaling cascade // inferred from mutant phenotype /// 0033144 // negative regulation of steroid hormone receptor signaling pathway // not recorded /// 0042493 // response to drug // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from sequence or structural similarity /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB cascade // inferred from mutant phenotype /// 0043149 // stress fiber assembly // not recorded /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043280 // positive regulation of caspase activity // inferred from mutant phenotype /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0045471 // response to ethanol // inferred from expression pattern /// 0045665 // negative regulation of neuron differentiation // inferred from mutant phenotype /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0045727 // positive regulation of translation // inferred from expression pattern /// 0045785 // positive regulation of cell adhesion // inferred from expression pattern /// 0045907 // positive regulation of vasoconstriction // inferred from expression pattern /// 0045987 // positive regulation of smooth muscle contraction // inferred from mutant phenotype /// 0048812 // neuron projection morphogenesis // inferred from expression pattern /// 0050770 // regulation of axonogenesis // not recorded /// 0050771 // negative regulation of axonogenesis // not recorded /// 0050772 // positive regulation of axonogenesis // not recorded /// 0050773 // regulation of dendrite development // inferred from mutant phenotype /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051496 // positive regulation of stress fiber assembly // inferred from electronic annotation /// 0051496 // positive regulation of stress fiber assembly // not recorded /// 0051927 // negative regulation of calcium ion transport via voltage-gated calcium channel activity // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // non-traceable author statement /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation /// 0017022 // myosin binding // inferred from electronic annotation /// 0017022 // myosin binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction 1370131_at NM_031556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031556.1 /DB_XREF=gi:19526760 /GEN=Cav1 /FEA=FLmRNA /CNT=5 /TID=Rn.81071.1 /TIER=FL /STK=0 /UG=Rn.81071 /DEF=Rattus norvegicus Caveolin, caveolae protein, 22 kDa (Cav1), mRNA. /PROD=caveolin 1 alpha /FL=gb:AF439779.1 gb:NM_031556.1 gb:AF439778.1 NM_031556 caveolin 1, caveolae protein Cav1 25404 NM_031556 /// NM_133651 0000165 // MAPKKK cascade // not recorded /// 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000188 // inactivation of MAPK activity // inferred from electronic annotation /// 0000188 // inactivation of MAPK activity // not recorded /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0001937 // negative regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0001937 // negative regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001960 // negative regulation of cytokine-mediated signaling pathway // inferred from electronic annotation /// 0001960 // negative regulation of cytokine-mediated signaling pathway // not recorded /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from mutant phenotype /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006940 // regulation of smooth muscle contraction // inferred from electronic annotation /// 0006940 // regulation of smooth muscle contraction // not recorded /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0007595 // lactation // inferred from electronic annotation /// 0007595 // lactation // not recorded /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009267 // cellular response to starvation // inferred from electronic annotation /// 0009267 // cellular response to starvation // not recorded /// 0009612 // response to mechanical stimulus // inferred from mutant phenotype /// 0009967 // positive regulation of signal transduction // inferred from mutant phenotype /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0009968 // negative regulation of signal transduction // not recorded /// 0010332 // response to gamma radiation // inferred from expression pattern /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from electronic annotation /// 0010524 // positive regulation of calcium ion transport into cytosol // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0010952 // positive regulation of peptidase activity // not recorded /// 0016050 // vesicle organization // inferred from electronic annotation /// 0016050 // vesicle organization // not recorded /// 0019217 // regulation of fatty acid metabolic process // inferred from electronic annotation /// 0019217 // regulation of fatty acid metabolic process // not recorded /// 0019915 // lipid storage // inferred from electronic annotation /// 0019915 // lipid storage // not recorded /// 0030193 // regulation of blood coagulation // inferred from electronic annotation /// 0030193 // regulation of blood coagulation // not recorded /// 0030301 // cholesterol transport // traceable author statement /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0030857 // negative regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030857 // negative regulation of epithelial cell differentiation // not recorded /// 0030879 // mammary gland development // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0031116 // positive regulation of microtubule polymerization // inferred from mutant phenotype /// 0031295 // T cell costimulation // not recorded /// 0031295 // T cell costimulation // inferred from sequence or structural similarity /// 0031295 // T cell costimulation // inferred from electronic annotation /// 0031623 // receptor internalization // not recorded /// 0032091 // negative regulation of protein binding // not recorded /// 0032507 // maintenance of protein location in cell // inferred from mutant phenotype /// 0032570 // response to progesterone stimulus // inferred from electronic annotation /// 0032570 // response to progesterone stimulus // not recorded /// 0033137 // negative regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033137 // negative regulation of peptidyl-serine phosphorylation // not recorded /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033138 // positive regulation of peptidyl-serine phosphorylation // not recorded /// 0033344 // cholesterol efflux // inferred from mutant phenotype /// 0033484 // nitric oxide homeostasis // inferred from electronic annotation /// 0033484 // nitric oxide homeostasis // not recorded /// 0042310 // vasoconstriction // not recorded /// 0042310 // vasoconstriction // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042524 // negative regulation of tyrosine phosphorylation of Stat5 protein // inferred from electronic annotation /// 0042524 // negative regulation of tyrosine phosphorylation of Stat5 protein // not recorded /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0043407 // negative regulation of MAP kinase activity // not recorded /// 0043407 // negative regulation of MAP kinase activity // inferred from electronic annotation /// 0043409 // negative regulation of MAPKKK cascade // inferred from electronic annotation /// 0043409 // negative regulation of MAPKKK cascade // not recorded /// 0043627 // response to estrogen stimulus // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // not recorded /// 0045019 // negative regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045019 // negative regulation of nitric oxide biosynthetic process // not recorded /// 0045056 // transcytosis // traceable author statement /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0045807 // positive regulation of endocytosis // inferred from mutant phenotype /// 0045907 // positive regulation of vasoconstriction // inferred from electronic annotation /// 0045907 // positive regulation of vasoconstriction // not recorded /// 0046426 // negative regulation of JAK-STAT cascade // inferred from electronic annotation /// 0046426 // negative regulation of JAK-STAT cascade // not recorded /// 0046785 // microtubule polymerization // inferred from mutant phenotype /// 0048554 // positive regulation of metalloenzyme activity // inferred from electronic annotation /// 0048554 // positive regulation of metalloenzyme activity // not recorded /// 0051259 // protein oligomerization // not recorded /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051480 // cytosolic calcium ion homeostasis // inferred from electronic annotation /// 0051480 // cytosolic calcium ion homeostasis // not recorded /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded /// 0051899 // membrane depolarization // inferred from electronic annotation /// 0051899 // membrane depolarization // not recorded /// 0052547 // regulation of peptidase activity // inferred from electronic annotation /// 0052547 // regulation of peptidase activity // not recorded /// 0055074 // calcium ion homeostasis // not recorded /// 0055074 // calcium ion homeostasis // inferred from electronic annotation /// 0060056 // mammary gland involution // inferred from electronic annotation /// 0060056 // mammary gland involution // not recorded /// 0070836 // caveola assembly // inferred from electronic annotation /// 0070836 // caveola assembly // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // inferred from sequence or structural similarity /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded 0000139 // Golgi membrane // not recorded /// 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0000299 // integral to membrane of membrane fraction // inferred from electronic annotation /// 0000299 // integral to membrane of membrane fraction // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay /// 0005811 // lipid particle // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005901 // caveola // inferred from direct assay /// 0005901 // caveola // not recorded /// 0005901 // caveola // inferred from sequence or structural similarity /// 0005901 // caveola // traceable author statement /// 0005901 // caveola // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0009925 // basal plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded /// 0045121 // membrane raft // inferred from direct assay /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0000149 // SNARE binding // inferred from mutant phenotype /// 0005102 // receptor binding // not recorded /// 0005198 // structural molecule activity // not recorded /// 0005198 // structural molecule activity // inferred from sequence or structural similarity /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016504 // peptidase activator activity // inferred from electronic annotation /// 0016504 // peptidase activator activity // not recorded /// 0019900 // kinase binding // inferred from physical interaction /// 0019905 // syntaxin binding // inferred from mutant phenotype /// 0050998 // nitric-oxide synthase binding // inferred from physical interaction /// 0050998 // nitric-oxide synthase binding // not recorded /// 0050998 // nitric-oxide synthase binding // inferred from electronic annotation 1370132_at NM_022675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022675.1 /DB_XREF=gi:12083612 /GEN=Fkbp1b /FEA=FLmRNA /CNT=5 /TID=Rn.46439.1 /TIER=FL /STK=0 /UG=Rn.46439 /LL=58950 /DEF=Rattus norvegicus FK506 binding protein 1b (12.6 kDa) (Fkbp1b), mRNA. /PROD=FK506 binding protein 1b (12.6 kDa) /FL=gb:NM_022675.1 gb:D86642.1 NM_022675 FK506 binding protein 1b Fkbp1b 58950 NM_022675 0002027 // regulation of heart rate // not recorded /// 0006457 // protein folding // inferred from electronic annotation /// 0006939 // smooth muscle contraction // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0009749 // response to glucose stimulus // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0010459 // negative regulation of heart rate // not recorded /// 0010881 // regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion // not recorded /// 0014808 // release of sequestered calcium ion into cytosol by sarcoplasmic reticulum // not recorded /// 0019227 // neuronal action potential propagation // not recorded /// 0030073 // insulin secretion // not recorded /// 0032234 // regulation of calcium ion transport via store-operated calcium channel activity // not recorded /// 0032513 // negative regulation of protein phosphatase type 2B activity // not recorded /// 0033197 // response to vitamin E // inferred from expression pattern /// 0042098 // T cell proliferation // not recorded /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0051209 // release of sequestered calcium ion into cytosol // not recorded /// 0051775 // response to redox state // not recorded /// 0060314 // regulation of ryanodine-sensitive calcium-release channel activity // not recorded 0005792 // microsome // inferred from direct assay /// 0033017 // sarcoplasmic reticulum membrane // not recorded /// 0034704 // calcium channel complex // not recorded 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // not recorded /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005528 // FK506 binding // inferred from direct assay /// 0005528 // FK506 binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation 1370133_at NM_021661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021661.1 /DB_XREF=gi:11067378 /GEN=Gaip /FEA=FLmRNA /CNT=5 /TID=Rn.41571.1 /TIER=FL /STK=0 /UG=Rn.41571 /LL=59293 /DEF=Rattus norvegicus G alpha interacting protein (Gaip), mRNA. /PROD=G alpha interacting protein /FL=gb:AF068136.1 gb:NM_021661.1 NM_021661 regulator of G-protein signaling 19 Rgs19 59293 NM_021661 0008277 // regulation of G-protein coupled receptor protein signaling pathway // traceable author statement /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation 0000139 // Golgi membrane // traceable author statement /// 0005624 // membrane fraction // inferred from direct assay /// 0005903 // brush border // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from direct assay /// 0044445 // cytosolic part // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation 1370134_at NM_022252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022252.1 /DB_XREF=gi:11560060 /GEN=Acatn /FEA=FLmRNA /CNT=4 /TID=Rn.53981.1 /TIER=FL /STK=0 /UG=Rn.53981 /LL=64018 /DEF=Rattus norvegicus acetyl-CoA transporter (Acatn), mRNA. /PROD=acetyl-CoA transporter /FL=gb:NM_022252.1 NM_022252 solute carrier family 33 (acetyl-CoA transporter), member 1 Slc33a1 64018 NM_022252 0006810 // transport // inferred from electronic annotation /// 0007417 // central nervous system development // non-traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008521 // acetyl-CoA transporter activity // non-traceable author statement 1370135_at NM_131914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_131914.1 /DB_XREF=gi:18777781 /GEN=Cav2 /FEA=FLmRNA /CNT=4 /TID=Rn.81070.1 /TIER=FL /STK=0 /UG=Rn.81070 /DEF=Rattus norvegicus caveolin 2 (Cav2), mRNA. /PROD=caveolin 2 /FL=gb:AF439780.1 gb:NM_131914.1 NM_131914 caveolin 2 /// caveolin 2-like Cav2 /// LOC100362824 100362824 /// 363425 NM_131914 /// XM_002730163 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0001937 // negative regulation of endothelial cell proliferation // inferred from sequence or structural similarity /// 0001937 // negative regulation of endothelial cell proliferation // inferred from electronic annotation /// 0006906 // vesicle fusion // not recorded /// 0006906 // vesicle fusion // inferred from sequence or structural similarity /// 0006906 // vesicle fusion // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0007005 // mitochondrion organization // inferred from sequence or structural similarity /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007029 // endoplasmic reticulum organization // not recorded /// 0007029 // endoplasmic reticulum organization // inferred from sequence or structural similarity /// 0007029 // endoplasmic reticulum organization // inferred from electronic annotation /// 0007088 // regulation of mitosis // inferred from electronic annotation /// 0007088 // regulation of mitosis // not recorded /// 0007268 // synaptic transmission // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0016050 // vesicle organization // not recorded /// 0016050 // vesicle organization // inferred from electronic annotation /// 0048278 // vesicle docking // not recorded /// 0048278 // vesicle docking // inferred from sequence or structural similarity /// 0048278 // vesicle docking // inferred from electronic annotation /// 0048741 // skeletal muscle fiber development // not recorded /// 0048741 // skeletal muscle fiber development // inferred from sequence or structural similarity /// 0048741 // skeletal muscle fiber development // inferred from electronic annotation /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0051259 // protein oligomerization // not recorded /// 0060161 // positive regulation of dopamine receptor signaling pathway // not recorded /// 0060161 // positive regulation of dopamine receptor signaling pathway // inferred from sequence or structural similarity /// 0060161 // positive regulation of dopamine receptor signaling pathway // inferred from electronic annotation /// 0070836 // caveola assembly // not recorded /// 0070836 // caveola assembly // inferred from sequence or structural similarity /// 0070836 // caveola assembly // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005901 // caveola // inferred from direct assay /// 0005901 // caveola // not recorded /// 0005901 // caveola // inferred from sequence or structural similarity /// 0005901 // caveola // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from electronic annotation /// 0030133 // transport vesicle // not recorded /// 0031234 // extrinsic to internal side of plasma membrane // not recorded /// 0031234 // extrinsic to internal side of plasma membrane // inferred from sequence or structural similarity /// 0031234 // extrinsic to internal side of plasma membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000149 // SNARE binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019905 // syntaxin binding // inferred from direct assay /// 0031748 // D1 dopamine receptor binding // not recorded /// 0031748 // D1 dopamine receptor binding // inferred from sequence or structural similarity /// 0031748 // D1 dopamine receptor binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0051219 // phosphoprotein binding // inferred from physical interaction 1370136_at NM_134453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134453.1 /DB_XREF=gi:19745167 /GEN=Lbr /FEA=FLmRNA /CNT=5 /TID=Rn.22196.1 /TIER=FL /STK=0 /UG=Rn.22196 /LL=89789 /DEF=Rattus norvegicus lamin B receptor (Lbr), mRNA. /PROD=lamin B receptor /FL=gb:AB002466.1 gb:NM_134453.1 NM_134453 lamin B receptor Lbr 89789 NM_134453 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0050613 // delta14-sterol reductase activity // not recorded /// 0070087 // chromo shadow domain binding // inferred from electronic annotation /// 0070087 // chromo shadow domain binding // not recorded 1370137_at NM_053350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053350.1 /DB_XREF=gi:16758069 /GEN=Agps /FEA=FLmRNA /CNT=4 /TID=Rn.40603.1 /TIER=FL /STK=0 /UG=Rn.40603 /LL=84114 /DEF=Rattus norvegicus alkyl-dihydroxyacetonephosphate synthase precursor (Agps), mRNA. /PROD=alkyl-dihydroxyacetonephosphate synthaseprecursor /FL=gb:AF121052.1 gb:NM_053350.1 NM_053350 alkylglycerone phosphate synthase Agps 84114 NM_053350 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // not recorded /// 0042221 // response to chemical stimulus // inferred from expression pattern 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // not recorded /// 0005777 // peroxisome // traceable author statement /// 0005777 // peroxisome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008609 // alkylglycerone-phosphate synthase activity // inferred from direct assay /// 0008609 // alkylglycerone-phosphate synthase activity // not recorded /// 0008609 // alkylglycerone-phosphate synthase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1370138_at NM_130429 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130429.1 /DB_XREF=gi:18426859 /GEN=Lef1 /FEA=FLmRNA /CNT=4 /TID=Rn.21926.1 /TIER=FL /STK=0 /UG=Rn.21926 /DEF=Rattus norvegicus lymphoid enhancer binding factor 1 (Lef1), mRNA. /PROD=lymphoid enhancer binding factor 1 /FL=gb:NM_130429.1 NM_130429 lymphoid enhancer binding factor 1 Lef1 161452 NM_130429 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001756 // somitogenesis // not recorded /// 0001822 // kidney development // inferred from expression pattern /// 0001837 // epithelial to mesenchymal transition // inferred from electronic annotation /// 0001837 // epithelial to mesenchymal transition // not recorded /// 0001944 // vasculature development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0007155 // cell adhesion // inferred from expression pattern /// 0010226 // response to lithium ion // inferred from expression pattern /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0021542 // dentate gyrus development // inferred from electronic annotation /// 0021542 // dentate gyrus development // not recorded /// 0021766 // hippocampus development // not recorded /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021987 // cerebral cortex development // not recorded /// 0030111 // regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030111 // regulation of Wnt receptor signaling pathway // not recorded /// 0030154 // cell differentiation // inferred from mutant phenotype /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030509 // BMP signaling pathway // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0030879 // mammary gland development // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0043586 // tongue development // not recorded /// 0043588 // skin development // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045843 // negative regulation of striated muscle tissue development // inferred from electronic annotation /// 0045843 // negative regulation of striated muscle tissue development // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048341 // paraxial mesoderm formation // inferred from electronic annotation /// 0048341 // paraxial mesoderm formation // not recorded /// 0048468 // cell development // inferred from electronic annotation /// 0048468 // cell development // not recorded /// 0050909 // sensory perception of taste // not recorded /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded /// 0060033 // anatomical structure regression // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060710 // chorio-allantoic fusion // inferred from electronic annotation /// 0060710 // chorio-allantoic fusion // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0032993 // protein-DNA complex // inferred from electronic annotation /// 0032993 // protein-DNA complex // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003704 // specific RNA polymerase II transcription factor activity // not recorded /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0008301 // DNA bending activity // not recorded /// 0008301 // DNA bending activity // inferred from sequence or structural similarity /// 0008301 // DNA bending activity // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0044212 // transcription regulatory region DNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // not recorded /// 0045295 // gamma-catenin binding // inferred from electronic annotation /// 0045295 // gamma-catenin binding // not recorded /// 0070016 // armadillo repeat domain binding // not recorded 1370139_a_at AB051214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB051214 /DB_XREF=gi:13702148 /FEA=DNA /CNT=1 /TID=Rn.35095.2 /TIER=ConsEnd /STK=0 /UG=Rn.35095 /LL=89823 /UG_GENE=Trrp6 /UG_TITLE=transient receptor protein 6 /DEF=Rattus norvegicus trp6C gene for transient receptor potential Ca2+ channel 6C, complete cds AB051214 transient receptor potential cation channel, subfamily C, member 6 Trpc6 89823 NM_053559 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // not recorded /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // inferred from direct assay /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015279 // store-operated calcium channel activity // inferred from electronic annotation /// 0015279 // store-operated calcium channel activity // not recorded 1370140_a_at AF053102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF053102.1 /DB_XREF=gi:3192977 /FEA=FLmRNA /CNT=2 /TID=Rn.14531.2 /TIER=FL /STK=1 /UG=Rn.14531 /LL=83630 /UG_GENE=Pax4 /DEF=Rattus norvegicus Pax4c mRNA, complete cds. /PROD=Pax4c /FL=gb:AF198156.1 gb:AF053102.1 AF053102 paired box 4 Pax4 83630 NM_031799 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from expression pattern /// 0016481 // negative regulation of transcription // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // not recorded /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // not recorded /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0051591 // response to cAMP // inferred from expression pattern /// 0060041 // retina development in camera-type eye // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1370141_at NM_021846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021846.1 /DB_XREF=gi:11177877 /GEN=Mcl1 /FEA=FLmRNA /CNT=4 /TID=Rn.44219.1 /TIER=FL /STK=0 /UG=Rn.44219 /LL=60430 /DEF=Rattus norvegicus myeloid cell leukemia sequence 1 (Mcl1), mRNA. /PROD=myeloid cell leukemia sequence 1 /FL=gb:NM_021846.1 gb:AF115380.1 NM_021846 1370142_at NM_022175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022175.1 /DB_XREF=gi:11559930 /GEN=Pem /FEA=FLmRNA /CNT=4 /TID=Rn.44483.1 /TIER=FL /STK=0 /UG=Rn.44483 /LL=24631 /DEF=Rattus norvegicus Homeobox gene Pem (Pem), mRNA. /PROD=homeobox gene Pem /FL=gb:NM_022175.1 NM_022175 reproductive homeobox 5 Rhox5 24631 NM_022175 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0030317 // sperm motility // not recorded /// 0035234 // germ cell programmed cell death // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation 1370143_at NM_012807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012807.1 /DB_XREF=gi:6981563 /GEN=Smoh /FEA=FLmRNA /CNT=3 /TID=Rn.44429.1 /TIER=FL /STK=0 /UG=Rn.44429 /LL=25273 /DEF=Rattus norvegicus Smoothened (Smoh), mRNA. /PROD=smoothened /FL=gb:U84402.1 gb:NM_012807.1 NM_012807 smoothened homolog (Drosophila) Smo 25273 NM_012807 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001649 // osteoblast differentiation // inferred from expression pattern /// 0001649 // osteoblast differentiation // not recorded /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001708 // cell fate specification // inferred from electronic annotation /// 0001708 // cell fate specification // not recorded /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0002052 // positive regulation of neuroblast proliferation // inferred from electronic annotation /// 0002052 // positive regulation of neuroblast proliferation // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // not recorded /// 0007224 // smoothened signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // not recorded /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007417 // central nervous system development // not recorded /// 0007417 // central nervous system development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0009611 // response to wounding // inferred from expression pattern /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from expression pattern /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0021561 // facial nerve development // inferred from expression pattern /// 0021696 // cerebellar cortex morphogenesis // inferred from electronic annotation /// 0021696 // cerebellar cortex morphogenesis // not recorded /// 0021904 // dorsal/ventral neural tube patterning // inferred from electronic annotation /// 0021904 // dorsal/ventral neural tube patterning // not recorded /// 0021910 // smoothened signaling pathway involved in ventral spinal cord patterning // inferred from electronic annotation /// 0021910 // smoothened signaling pathway involved in ventral spinal cord patterning // not recorded /// 0021938 // smoothened signaling pathway involved in regulation of granule cell precursor cell proliferation // inferred from electronic annotation /// 0021938 // smoothened signaling pathway involved in regulation of granule cell precursor cell proliferation // not recorded /// 0021953 // central nervous system neuron differentiation // inferred from electronic annotation /// 0021953 // central nervous system neuron differentiation // not recorded /// 0031102 // neuron projection regeneration // inferred from expression pattern /// 0033687 // osteoblast proliferation // inferred from expression pattern /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded /// 0042307 // positive regulation of protein import into nucleus // inferred from electronic annotation /// 0042307 // positive regulation of protein import into nucleus // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043392 // negative regulation of DNA binding // inferred from electronic annotation /// 0043392 // negative regulation of DNA binding // not recorded /// 0045880 // positive regulation of smoothened signaling pathway // inferred from electronic annotation /// 0045880 // positive regulation of smoothened signaling pathway // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048468 // cell development // inferred from electronic annotation /// 0048468 // cell development // not recorded /// 0048589 // developmental growth // inferred from electronic annotation /// 0048589 // developmental growth // not recorded /// 0048846 // axon extension involved in axon guidance // inferred from mutant phenotype /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0050821 // protein stabilization // inferred from electronic annotation /// 0050821 // protein stabilization // not recorded /// 0060684 // epithelial-mesenchymal cell signaling // inferred from electronic annotation /// 0060684 // epithelial-mesenchymal cell signaling // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005929 // cilium // inferred from electronic annotation /// 0005929 // cilium // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1370144_at NM_053689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053689.1 /DB_XREF=gi:16758947 /GEN=Crfg /FEA=FLmRNA /CNT=3 /TID=Rn.8867.1 /TIER=FL /STK=0 /UG=Rn.8867 /LL=114300 /DEF=Rattus norvegicus G protein-binding protein CRFG (Crfg), mRNA. /PROD=G protein-binding protein CRFG /FL=gb:AF325355.1 gb:NM_053689.1 NM_053689 GTP binding protein 4 /// similar to Nucleolar GTP-binding protein 1 (Chronic renal failure gene protein) (GTP-binding protein NGB) /// similar to Nucleolar GTP-binding protein 1 (Chronic renal failure gene protein) (GTP-binding protein NGB) /// similar to GTP-binding protein NGB Gtpbp4 /// LOC689822 /// LOC689842 /// RGD1563564 114300 /// 498786 /// 689822 /// 689842 NM_053689 /// XM_002728505 /// XR_006738 /// XR_086071 0000079 // regulation of cyclin-dependent protein kinase activity // not recorded /// 0000079 // regulation of cyclin-dependent protein kinase activity // inferred from sequence or structural similarity /// 0008156 // negative regulation of DNA replication // not recorded /// 0008156 // negative regulation of DNA replication // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0022408 // negative regulation of cell-cell adhesion // not recorded /// 0022408 // negative regulation of cell-cell adhesion // inferred from sequence or structural similarity /// 0030336 // negative regulation of cell migration // not recorded /// 0030336 // negative regulation of cell migration // inferred from sequence or structural similarity /// 0031397 // negative regulation of protein ubiquitination // not recorded /// 0031397 // negative regulation of protein ubiquitination // inferred from sequence or structural similarity /// 0033342 // negative regulation of collagen binding // not recorded /// 0033342 // negative regulation of collagen binding // inferred from sequence or structural similarity /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0050821 // protein stabilization // not recorded /// 0050821 // protein stabilization // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0005525 // GTP binding // inferred from electronic annotation 1370145_at NM_023988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023988.1 /DB_XREF=gi:13027447 /GEN=Zfp354c /FEA=FLmRNA /CNT=3 /TID=Rn.64579.1 /TIER=FL /STK=0 /UG=Rn.64579 /LL=78972 /DEF=Rattus norvegicus zinc finger protein 354C (Zfp354c), mRNA. /PROD=AJ18 protein /FL=gb:NM_023988.1 gb:AF321874.1 NM_023988 zinc finger protein 354C Zfp354c 78972 NM_023988 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370146_at NM_053296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053296.1 /DB_XREF=gi:17865324 /GEN=Glrb /FEA=FLmRNA /CNT=3 /TID=Rn.67073.1 /TIER=FL /STK=0 /UG=Rn.67073 /LL=25456 /DEF=Rattus norvegicus Glycine receptor beta (Glrb), mRNA. /PROD=glycine receptor beta /FL=gb:NM_053296.1 NM_053296 glycine receptor, beta Glrb 25456 NM_053296 0001964 // startle response // not recorded /// 0001964 // startle response // inferred from sequence or structural similarity /// 0001964 // startle response // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006811 // ion transport // not recorded /// 0006811 // ion transport // inferred from sequence or structural similarity /// 0006821 // chloride transport // inferred from electronic annotation /// 0006821 // chloride transport // not recorded /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007218 // neuropeptide signaling pathway // inferred from sequence or structural similarity /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007268 // synaptic transmission // inferred from sequence or structural similarity /// 0007268 // synaptic transmission // traceable author statement /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007340 // acrosome reaction // inferred from electronic annotation /// 0007340 // acrosome reaction // not recorded /// 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from sequence or structural similarity /// 0007399 // nervous system development // inferred from electronic annotation /// 0007601 // visual perception // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0007628 // adult walking behavior // inferred from electronic annotation /// 0007628 // adult walking behavior // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded /// 0050905 // neuromuscular process // not recorded /// 0050905 // neuromuscular process // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0060012 // synaptic transmission, glycinergic // inferred from direct assay /// 0060012 // synaptic transmission, glycinergic // not recorded /// 0060012 // synaptic transmission, glycinergic // inferred from electronic annotation /// 0060013 // righting reflex // inferred from electronic annotation /// 0060013 // righting reflex // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0045211 // postsynaptic membrane // traceable author statement 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0005488 // binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016594 // glycine binding // inferred from direct assay /// 0016594 // glycine binding // not recorded /// 0016594 // glycine binding // inferred from sequence or structural similarity /// 0016594 // glycine binding // inferred from electronic annotation /// 0016933 // extracellular-glycine-gated ion channel activity // inferred from direct assay /// 0016933 // extracellular-glycine-gated ion channel activity // not recorded /// 0016933 // extracellular-glycine-gated ion channel activity // inferred from sequence or structural similarity /// 0016933 // extracellular-glycine-gated ion channel activity // traceable author statement /// 0016933 // extracellular-glycine-gated ion channel activity // inferred from electronic annotation /// 0016934 // extracellular-glycine-gated chloride channel activity // inferred from electronic annotation /// 0016934 // extracellular-glycine-gated chloride channel activity // not recorded /// 0016934 // extracellular-glycine-gated chloride channel activity // inferred from sequence or structural similarity 1370147_at NM_134372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134372.1 /DB_XREF=gi:19705472 /GEN=acmsd /FEA=FLmRNA /CNT=3 /TID=Rn.81224.1 /TIER=FL /STK=0 /UG=Rn.81224 /DEF=Rattus norvegicus 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase (acmsd), mRNA. /PROD=2-amino-3-carboxymuconate-6-semialdehydedecarboxylase /FL=gb:AB069781.1 gb:NM_134372.1 NM_134372 aminocarboxymuconate semialdehyde decarboxylase Acmsd 171385 NM_134372 0006568 // tryptophan metabolic process // traceable author statement /// 0006769 // nicotinamide metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0046874 // quinolinate metabolic process // not recorded /// 0046874 // quinolinate metabolic process // inferred from sequence or structural similarity /// 0046874 // quinolinate metabolic process // traceable author statement /// 0046874 // quinolinate metabolic process // inferred from electronic annotation 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation 0001760 // aminocarboxymuconate-semialdehyde decarboxylase activity // inferred from direct assay /// 0001760 // aminocarboxymuconate-semialdehyde decarboxylase activity // not recorded /// 0001760 // aminocarboxymuconate-semialdehyde decarboxylase activity // inferred from sequence or structural similarity /// 0001760 // aminocarboxymuconate-semialdehyde decarboxylase activity // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // not recorded /// 0016831 // carboxy-lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370148_at NM_012582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012582.1 /DB_XREF=gi:6981041 /GEN=Hp /FEA=FLmRNA /CNT=3 /TID=Rn.10950.1 /TIER=FL /STK=0 /UG=Rn.10950 /LL=24464 /DEF=Rattus norvegicus Haptoglobin (Hp), mRNA. /PROD=haptoglobin /FL=gb:NM_012582.1 NM_012582 haptoglobin Hp 24464 NM_012582 0001666 // response to hypoxia // inferred from expression pattern /// 0001889 // liver development // inferred from direct assay /// 0002526 // acute inflammatory response // inferred from expression pattern /// 0006508 // proteolysis // inferred from electronic annotation /// 0006950 // response to stress // inferred from expression pattern /// 0007283 // spermatogenesis // inferred from expression pattern /// 0009408 // response to heat // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0010165 // response to X-ray // inferred from expression pattern /// 0010288 // response to lead ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0031100 // organ regeneration // inferred from expression pattern /// 0032026 // response to magnesium ion // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033590 // response to cobalamin // inferred from expression pattern /// 0033591 // response to L-ascorbic acid // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0030492 // hemoglobin binding // inferred from direct assay /// 0030492 // hemoglobin binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay 1370149_at NM_012503 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012503.1 /DB_XREF=gi:7705289 /GEN=Asgr1 /FEA=FLmRNA /CNT=3 /TID=Rn.44300.1 /TIER=FL /STK=0 /UG=Rn.44300 /LL=24210 /DEF=Rattus norvegicus Asialoglycoprotein receptor 1 (hepatic lectin) (Asgr1), mRNA. /PROD=asialoglycoprotein receptor 1 (hepatic lectin) /FL=gb:NM_012503.1 NM_012503 asialoglycoprotein receptor 1 Asgr1 24210 NM_012503 0006897 // endocytosis // inferred from electronic annotation /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0031668 // cellular response to extracellular stimulus // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004873 // asialoglycoprotein receptor activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1370150_a_at NM_012703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012703.1 /DB_XREF=gi:13487928 /GEN=Thrsp /FEA=FLmRNA /CNT=3 /TID=Rn.81140.1 /TIER=FL /STK=0 /UG=Rn.81140 /LL=24927 /DEF=Rattus norvegicus Thyroid hormone responsive protein (spot14) (Thrsp), mRNA. /PROD=thyroid hormone responsive protein (spot14) /FL=gb:NM_012703.1 NM_012703 thyroid hormone responsive Thrsp 25357 NM_012703 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370151_at NM_017072 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017072.1 /DB_XREF=gi:8393185 /GEN=Cps1 /FEA=FLmRNA /CNT=3 /TID=Rn.53968.1 /TIER=FL /STK=0 /UG=Rn.53968 /LL=24956 /DEF=Rattus norvegicus Carboamyl-phosphate synthetase 1 (Cps1), mRNA. /PROD=carboamyl-phosphate synthetase 1 /FL=gb:NM_017072.1 NM_017072 carbamoyl-phosphate synthetase 1 Cps1 497840 NM_017072 0000050 // urea cycle // inferred from direct assay /// 0000050 // urea cycle // inferred from electronic annotation /// 0001101 // response to acid // inferred from expression pattern /// 0001889 // liver development // inferred from expression pattern /// 0005980 // glycogen catabolic process // inferred from electronic annotation /// 0005980 // glycogen catabolic process // not recorded /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0006807 // nitrogen compound metabolic process // inferred from electronic annotation /// 0007494 // midgut development // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009636 // response to toxin // inferred from expression pattern /// 0010043 // response to zinc ion // inferred from expression pattern /// 0014075 // response to amine stimulus // inferred from expression pattern /// 0019433 // triglyceride catabolic process // inferred from electronic annotation /// 0019433 // triglyceride catabolic process // not recorded /// 0032094 // response to food // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0033762 // response to glucagon stimulus // inferred from expression pattern /// 0034201 // response to oleic acid // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042594 // response to starvation // inferred from expression pattern /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0044344 // cellular response to fibroblast growth factor stimulus // inferred from expression pattern /// 0045909 // positive regulation of vasodilation // inferred from electronic annotation /// 0045909 // positive regulation of vasodilation // not recorded /// 0046209 // nitric oxide metabolic process // inferred from electronic annotation /// 0046209 // nitric oxide metabolic process // not recorded /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern /// 0055081 // anion homeostasis // inferred from direct assay /// 0060416 // response to growth hormone stimulus // inferred from expression pattern /// 0070365 // hepatocyte differentiation // inferred from expression pattern /// 0070409 // carbamoyl phosphate biosynthetic process // inferred from electronic annotation /// 0070409 // carbamoyl phosphate biosynthetic process // not recorded /// 0071320 // cellular response to cAMP // inferred from expression pattern /// 0071377 // cellular response to glucagon stimulus // inferred from expression pattern /// 0071400 // cellular response to oleic acid // inferred from expression pattern /// 0071548 // response to dexamethasone stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005759 // mitochondrial matrix // not recorded /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004086 // carbamoyl-phosphate synthase activity // inferred from electronic annotation /// 0004087 // carbamoyl-phosphate synthase (ammonia) activity // inferred from direct assay /// 0004087 // carbamoyl-phosphate synthase (ammonia) activity // not recorded /// 0004087 // carbamoyl-phosphate synthase (ammonia) activity // inferred from electronic annotation /// 0004175 // endopeptidase activity // inferred from mutant phenotype /// 0005509 // calcium ion binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from direct assay /// 0005543 // phospholipid binding // inferred from physical interaction /// 0016595 // glutamate binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay 1370152_at NM_012795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012795.1 /DB_XREF=gi:6980973 /GEN=Gp5 /FEA=FLmRNA /CNT=2 /TID=Rn.9800.1 /TIER=FL /STK=0 /UG=Rn.9800 /LL=25259 /DEF=Rattus norvegicus Platelete glycoprotein 5 (Gp5), mRNA. /PROD=platelete glycoprotein 5 /FL=gb:NM_012795.1 NM_012795 glycoprotein V (platelet) Gp5 25259 NM_012795 0007155 // cell adhesion // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031092 // platelet alpha granule membrane // not recorded 0005515 // protein binding // inferred from electronic annotation 1370153_at NM_019216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019216.1 /DB_XREF=gi:9506718 /GEN=Gdf15 /FEA=FLmRNA /CNT=2 /TID=Rn.44228.1 /TIER=FL /STK=0 /UG=Rn.44228 /LL=29455 /DEF=Rattus norvegicus growth differentiation factor 15 (Gdf15), mRNA. /PROD=growth differentiation factor 15 /FL=gb:NM_019216.1 NM_019216 growth differentiation factor 15 Gdf15 29455 NM_019216 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation 1370154_at L12458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L12458 /DB_XREF=gi:294584 /FEA=FLmRNA /CNT=56 /TID=Rn.2283.1 /TIER=Stack /STK=37 /UG=Rn.2283 /LL=25211 /UG_GENE=Lyz /UG_TITLE=Lysozyme /DEF=Rat lysozyme gene, complete cds /FL=gb:NM_012771.1 L12458 lysozyme 2 Lyz2 25211 NM_012771 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0016998 // cell wall macromolecule catabolic process // inferred from electronic annotation /// 0019835 // cytolysis // inferred from electronic annotation /// 0042742 // defense response to bacterium // not recorded /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0050829 // defense response to Gram-negative bacterium // inferred from mutant phenotype /// 0050829 // defense response to Gram-negative bacterium // not recorded /// 0050830 // defense response to Gram-positive bacterium // inferred from mutant phenotype /// 0050830 // defense response to Gram-positive bacterium // not recorded 0000137 // Golgi cis cisterna // inferred from direct assay /// 0005576 // extracellular region // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0005795 // Golgi stack // inferred from direct assay /// 0005902 // microvillus // inferred from direct assay /// 0030140 // trans-Golgi network transport vesicle // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay /// 0048237 // rough endoplasmic reticulum lumen // inferred from direct assay 0003796 // lysozyme activity // inferred from direct assay /// 0003796 // lysozyme activity // inferred from mutant phenotype /// 0003796 // lysozyme activity // not recorded /// 0003796 // lysozyme activity // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from mutant phenotype /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation 1370155_at BM388837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388837 /DB_XREF=gi:18188890 /DB_XREF=UI-R-DZ0-ckn-e-06-0-UI.s1 /CLONE=UI-R-DZ0-ckn-e-06-0-UI /FEA=FLmRNA /CNT=162 /TID=Rn.16629.1 /TIER=Stack /STK=11 /UG=Rn.16629 /LL=84352 /UG_GENE=Col1a2 /UG_TITLE=procollagen, type I, alpha 2 /FL=gb:NM_053356.1 gb:AF121217.1 BM388837 collagen, type I, alpha 2 Col1a2 84352 NM_053356 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007266 // Rho protein signal transduction // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // not recorded /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008217 // regulation of blood pressure // not recorded /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0030199 // collagen fibril organization // not recorded /// 0043589 // skin morphogenesis // inferred from electronic annotation /// 0043589 // skin morphogenesis // not recorded /// 0070208 // protein heterotrimerization // inferred from electronic annotation /// 0070208 // protein heterotrimerization // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen // inferred from electronic annotation /// 0005581 // collagen // not recorded /// 0005584 // collagen type I // inferred from electronic annotation /// 0005584 // collagen type I // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005886 // plasma membrane // not recorded /// 0031012 // extracellular matrix // not recorded 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030674 // protein binding, bridging // inferred from electronic annotation /// 0030674 // protein binding, bridging // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046332 // SMAD binding // not recorded /// 0048407 // platelet-derived growth factor binding // inferred from electronic annotation /// 0048407 // platelet-derived growth factor binding // not recorded 1370156_at BI278802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278802 /DB_XREF=gi:14926008 /DB_XREF=UI-R-CX0-bwx-a-09-0-UI.s1 /CLONE=UI-R-CX0-bwx-a-09-0-UI /FEA=FLmRNA /CNT=45 /TID=Rn.3936.1 /TIER=Stack /STK=29 /UG=Rn.3936 /LL=24686 /UG_GENE=Prnp /UG_TITLE=Prion protein, structural /FL=gb:NM_012631.1 BI278802 prion protein Prnp 24686 NM_012631 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0046686 // response to cadmium ion // inferred from direct assay /// 0046688 // response to copper ion // inferred from direct assay /// 0051260 // protein homooligomerization // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded /// 0046658 // anchored to plasma membrane // traceable author statement 0005507 // copper ion binding // not recorded /// 0005507 // copper ion binding // inferred from sequence or structural similarity /// 0005507 // copper ion binding // traceable author statement /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0015631 // tubulin binding // not recorded /// 0015631 // tubulin binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1370157_at BI290034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290034 /DB_XREF=gi:14948221 /DB_XREF=UI-R-DK0-cfr-a-10-0-UI.s1 /CLONE=UI-R-DK0-cfr-a-10-0-UI /FEA=FLmRNA /CNT=43 /TID=Rn.9740.1 /TIER=Stack /STK=21 /UG=Rn.9740 /LL=64672 /UG_GENE=Plm /UG_TITLE=phospholamban /FL=gb:NM_022707.1 BI290034 phospholamban Pln 64672 NM_022707 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002026 // regulation of the force of heart contraction // not recorded /// 0006816 // calcium ion transport // inferred from mutant phenotype /// 0006816 // calcium ion transport // non-traceable author statement /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0045822 // negative regulation of heart contraction // inferred from electronic annotation /// 0045822 // negative regulation of heart contraction // not recorded /// 0048738 // cardiac muscle tissue development // inferred from electronic annotation /// 0048738 // cardiac muscle tissue development // not recorded /// 0051924 // regulation of calcium ion transport // inferred from sequence or structural similarity 0005739 // mitochondrion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // not recorded /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005246 // calcium channel regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042030 // ATPase inhibitor activity // inferred from direct assay /// 0042030 // ATPase inhibitor activity // inferred from electronic annotation 1370158_at AA946388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946388 /DB_XREF=gi:3106304 /DB_XREF=EST201887 /CLONE=RLUBH54 /FEA=FLmRNA /CNT=36 /TID=Rn.1239.1 /TIER=Stack /STK=19 /UG=Rn.1239 /LL=24582 /UG_GENE=Myh11 /UG_TITLE=Myosin heavy chain 11 /FL=gb:NM_031520.1 gb:AF139055.1 AA946388 myosin, heavy chain 10, non-muscle Myh10 79433 NM_031520 0000281 // cytokinesis after mitosis // inferred from electronic annotation /// 0000281 // cytokinesis after mitosis // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0001778 // plasma membrane repair // inferred from electronic annotation /// 0001778 // plasma membrane repair // not recorded /// 0006887 // exocytosis // inferred from electronic annotation /// 0006887 // exocytosis // not recorded /// 0006928 // cellular component movement // non-traceable author statement /// 0006930 // substrate-dependent cell migration, cell extension // inferred from electronic annotation /// 0006930 // substrate-dependent cell migration, cell extension // not recorded /// 0007097 // nuclear migration // inferred from electronic annotation /// 0007097 // nuclear migration // not recorded /// 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007512 // adult heart development // inferred from electronic annotation /// 0007512 // adult heart development // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0021592 // fourth ventricle development // inferred from electronic annotation /// 0021592 // fourth ventricle development // not recorded /// 0021670 // lateral ventricle development // inferred from electronic annotation /// 0021670 // lateral ventricle development // not recorded /// 0021678 // third ventricle development // inferred from electronic annotation /// 0021678 // third ventricle development // not recorded /// 0021680 // cerebellar Purkinje cell layer development // inferred from electronic annotation /// 0021680 // cerebellar Purkinje cell layer development // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0030048 // actin filament-based movement // not recorded /// 0030239 // myofibril assembly // not recorded /// 0030239 // myofibril assembly // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from electronic annotation /// 0031175 // neuron projection development // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0055003 // cardiac myofibril assembly // inferred from electronic annotation /// 0055003 // cardiac myofibril assembly // not recorded /// 0055015 // ventricular cardiac muscle cell development // inferred from electronic annotation /// 0055015 // ventricular cardiac muscle cell development // not recorded /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // not recorded 0001725 // stress fiber // inferred from electronic annotation /// 0001725 // stress fiber // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005819 // spindle // inferred from electronic annotation /// 0005819 // spindle // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0016459 // myosin complex // inferred from electronic annotation /// 0016459 // myosin complex // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0030426 // growth cone // inferred from electronic annotation /// 0030426 // growth cone // not recorded /// 0030496 // midbody // not recorded /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0031594 // neuromuscular junction // not recorded /// 0032154 // cleavage furrow // not recorded /// 0043005 // neuron projection // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043197 // dendritic spine // not recorded 0000146 // microfilament motor activity // not recorded /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0030898 // actin-dependent ATPase activity // not recorded /// 0043531 // ADP binding // not recorded /// 0051015 // actin filament binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1370159_at AB003505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB003505 /DB_XREF=gi:2723485 /FEA=FLmRNA /CNT=26 /TID=Rn.3053.1 /TIER=Stack /STK=19 /UG=Rn.3053 /LL=83833 /UG_GENE=Smarcd2 /UG_TITLE=SWISNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 /DEF=Rattus norvegicus gene for BAF60b, complete cds /FL=gb:NM_031983.1 AB003505 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 Smarcd2 83833 NM_031983 0006350 // transcription // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0016514 // SWI/SNF complex // not recorded /// 0016514 // SWI/SNF complex // traceable author statement 0005515 // protein binding // not recorded 1370160_at AI178742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178742 /DB_XREF=gi:3729380 /DB_XREF=EST222423 /CLONE=RSPBK51 /FEA=FLmRNA /CNT=25 /TID=Rn.25763.1 /TIER=Stack /STK=18 /UG=Rn.25763 /LL=170751 /UG_GENE=Xpnpep1 /UG_TITLE=cytoplasmic aminopeptidase P /FL=gb:NM_131913.1 gb:AF038591.1 AI178742 X-prolyl aminopeptidase (aminopeptidase P) 1, soluble Xpnpep1 170751 NM_131913 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0009987 // cellular process // inferred from electronic annotation /// 0010815 // bradykinin catabolic process // not recorded /// 0010815 // bradykinin catabolic process // inferred from sequence or structural similarity /// 0010815 // bradykinin catabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0004177 // aminopeptidase activity // inferred from direct assay /// 0004177 // aminopeptidase activity // not recorded /// 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008235 // metalloexopeptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // not recorded /// 0030145 // manganese ion binding // inferred from sequence or structural similarity /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070006 // metalloaminopeptidase activity // not recorded /// 0070006 // metalloaminopeptidase activity // inferred from sequence or structural similarity /// 0070006 // metalloaminopeptidase activity // inferred from electronic annotation 1370161_at AI235465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235465 /DB_XREF=gi:3828971 /DB_XREF=EST232027 /CLONE=ROVCS13 /FEA=FLmRNA /CNT=23 /TID=Rn.2193.1 /TIER=Stack /STK=18 /UG=Rn.2193 /LL=64387 /UG_GENE=Ssg1 /UG_TITLE=steroid sensitive gene-1 protein /FL=gb:AF223677.1 gb:NM_022543.1 AI235465 coiled-coil domain containing 80 Ccdc80 64387 NM_022543 0010811 // positive regulation of cell-substrate adhesion // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // not recorded /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005614 // interstitial matrix // inferred from electronic annotation /// 0005614 // interstitial matrix // not recorded /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded 0001968 // fibronectin binding // inferred from electronic annotation /// 0001968 // fibronectin binding // not recorded /// 0005539 // glycosaminoglycan binding // not recorded /// 0005539 // glycosaminoglycan binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded 1370162_at BI285346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285346 /DB_XREF=gi:14938887 /DB_XREF=UI-R-DB0-byz-a-04-0-UI.s1 /CLONE=UI-R-DB0-byz-a-04-0-UI /FEA=FLmRNA /CNT=367 /TID=Rn.16065.1 /TIER=Stack /STK=17 /UG=Rn.16065 /UG_TITLE=Rattus norvegicus putative protein serinethreonine phosphatase 4-associated protein mRNA, complete cds /FL=gb:NM_080907.1 gb:AF332004.1 BI285346 protein phosphatase 4, regulatory subunit 1 Ppp4r1 140943 NM_080907 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370163_at BF281299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281299 /DB_XREF=gi:11212369 /DB_XREF=EST445890 /CLONE=RGIAC87 /FEA=FLmRNA /CNT=40 /TID=Rn.874.1 /TIER=Stack /STK=17 /UG=Rn.874 /LL=24609 /UG_GENE=Odc1 /UG_TITLE=Ornitine decarboxylase /FL=gb:NM_012615.1 gb:M16982.1 BF281299 ornithine decarboxylase 1 Odc1 24609 NM_012615 0001822 // kidney development // not recorded /// 0006595 // polyamine metabolic process // inferred from direct assay /// 0006596 // polyamine biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0009446 // putrescine biosynthetic process // inferred from direct assay /// 0009615 // response to virus // not recorded 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004586 // ornithine decarboxylase activity // inferred from direct assay /// 0004586 // ornithine decarboxylase activity // not recorded /// 0004586 // ornithine decarboxylase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation 1370164_at AA800240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800240 /DB_XREF=gi:2863195 /DB_XREF=EST189737 /CLONE=RHEAM82 /FEA=FLmRNA /CNT=36 /TID=Rn.3340.1 /TIER=Stack /STK=15 /UG=Rn.3340 /LL=170670 /UG_GENE=Hadha /UG_TITLE=hydroxyacyl-Coenzyme A dehydrogenase3-ketoacyl-Coenzyme A hiolaseenoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit /FL=gb:NM_130826.1 gb:D16478.1 AA800240 hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit Hadha 170670 NM_130826 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from direct assay /// 0006635 // fatty acid beta-oxidation // not recorded /// 0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0016507 // fatty acid beta-oxidation multienzyme complex // inferred from direct assay /// 0016507 // fatty acid beta-oxidation multienzyme complex // traceable author statement /// 0016507 // fatty acid beta-oxidation multienzyme complex // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded 0000062 // acyl-CoA binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // inferred from direct assay /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // inferred from mutant phenotype /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0003988 // acetyl-CoA C-acyltransferase activity // inferred from direct assay /// 0004300 // enoyl-CoA hydratase activity // inferred from direct assay /// 0004300 // enoyl-CoA hydratase activity // inferred from mutant phenotype /// 0004300 // enoyl-CoA hydratase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016508 // long-chain-enoyl-CoA hydratase activity // inferred from direct assay /// 0016509 // long-chain-3-hydroxyacyl-CoA dehydrogenase activity // inferred from direct assay /// 0016509 // long-chain-3-hydroxyacyl-CoA dehydrogenase activity // not recorded /// 0016509 // long-chain-3-hydroxyacyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from direct assay 1370165_at AI406565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406565 /DB_XREF=gi:4250069 /DB_XREF=EST234851 /CLONE=RKIDZ15 /FEA=FLmRNA /CNT=37 /TID=Rn.4123.1 /TIER=Stack /STK=15 /UG=Rn.4123 /LL=84416 /UG_GENE=Smpx /UG_TITLE=small muscle protein, X-linked /FL=gb:AF364071.1 gb:NM_053395.1 AI406565 small muscle protein, X-linked Smpx 84416 NM_053395 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005927 // muscle tendon junction // inferred from electronic annotation /// 0005927 // muscle tendon junction // not recorded /// 0031430 // M band // inferred from electronic annotation /// 0031430 // M band // not recorded /// 0043034 // costamere // inferred from electronic annotation /// 0043034 // costamere // not recorded /// 0043292 // contractile fiber // inferred from electronic annotation /// 0043292 // contractile fiber // not recorded 1370166_at AI169682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169682 /DB_XREF=gi:3709722 /DB_XREF=EST215575 /CLONE=RLIAQ54 /FEA=FLmRNA /CNT=35 /TID=Rn.11127.1 /TIER=Stack /STK=14 /UG=Rn.11127 /LL=25615 /UG_GENE=Sdc2 /UG_TITLE=Ryudocansyndecan 2 /FL=gb:NM_013082.1 gb:M81687.1 AI169682 syndecan 2 Sdc2 25615 NM_013082 0001666 // response to hypoxia // inferred from expression pattern /// 0031000 // response to caffeine // inferred from expression pattern /// 0042060 // wound healing // inferred from expression pattern /// 0048813 // dendrite morphogenesis // inferred from expression pattern 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 1370167_at BG668421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668421 /DB_XREF=gi:13890343 /DB_XREF=DRABGB03 /CLONE=DRABGB03 /FEA=FLmRNA /CNT=35 /TID=Rn.11127.1 /TIER=Stack /STK=7 /UG=Rn.11127 /LL=25615 /UG_GENE=Sdc2 /UG_TITLE=Ryudocansyndecan 2 /FL=gb:NM_013082.1 gb:M81687.1 BG668421 syndecan 2 Sdc2 25615 NM_013082 0001666 // response to hypoxia // inferred from expression pattern /// 0031000 // response to caffeine // inferred from expression pattern /// 0042060 // wound healing // inferred from expression pattern /// 0048813 // dendrite morphogenesis // inferred from expression pattern 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 1370168_at BI277793 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277793 /DB_XREF=gi:14924011 /DB_XREF=UI-R-CZ0-byb-e-12-0-UI.s1 /CLONE=UI-R-CZ0-byb-e-12-0-UI /FEA=FLmRNA /CNT=92 /TID=Rn.2502.1 /TIER=Stack /STK=10 /UG=Rn.2502 /LL=25577 /UG_GENE=Ywhaq /UG_TITLE=Tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, theta polypeptide /FL=gb:NM_013053.1 gb:D17614.1 BI277793 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide Ywhaq 25577 NM_013053 0006605 // protein targeting // inferred from electronic annotation /// 0006605 // protein targeting // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1370169_at BI289608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289608 /DB_XREF=gi:14947356 /DB_XREF=UI-R-DK0-cfi-a-05-0-UI.s1 /CLONE=UI-R-DK0-cfi-a-05-0-UI /FEA=FLmRNA /CNT=56 /TID=Rn.3562.1 /TIER=Stack /STK=12 /UG=Rn.3562 /LL=117180 /UG_GENE=unr /UG_TITLE=unr protein /FL=gb:NM_054006.1 BI289608 cold shock domain containing E1, RNA binding /// cold shock domain containing E1, RNA binding-like Csde1 /// LOC100362464 100362464 /// 117180 NM_054006 /// XM_002729113 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370170_at AI177494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177494 /DB_XREF=gi:3728132 /DB_XREF=EST221126 /CLONE=RPLCA67 /FEA=FLmRNA /CNT=32 /TID=Rn.4328.1 /TIER=Stack /STK=12 /UG=Rn.4328 /LL=117280 /UG_GENE=Hnrpu /UG_TITLE=transporter protein; system N1 Na+ and H+-coupled glutamine transporter /FL=gb:NM_057139.1 gb:D14048.1 AI177494 heterogeneous nuclear ribonucleoprotein U Hnrnpu 117280 NM_057139 0001906 // cell killing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0070934 // CRD-mediated mRNA stabilization // inferred from electronic annotation /// 0070934 // CRD-mediated mRNA stabilization // not recorded 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded /// 0070937 // CRD-mediated mRNA stability complex // inferred from electronic annotation /// 0070937 // CRD-mediated mRNA stability complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005215 // transporter activity // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1370171_at AI058964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058964 /DB_XREF=gi:3332741 /DB_XREF=UI-R-C1-lr-g-12-0-UI.s1 /CLONE=UI-R-C1-lr-g-12-0-UI /FEA=FLmRNA /CNT=32 /TID=Rn.4328.1 /TIER=ConsEnd /STK=1 /UG=Rn.4328 /LL=117280 /UG_GENE=Hnrpu /UG_TITLE=transporter protein; system N1 Na+ and H+-coupled glutamine transporter /FL=gb:NM_057139.1 gb:D14048.1 AI058964 heterogeneous nuclear ribonucleoprotein U Hnrnpu 117280 NM_057139 0001906 // cell killing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0070934 // CRD-mediated mRNA stabilization // inferred from electronic annotation /// 0070934 // CRD-mediated mRNA stabilization // not recorded 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded /// 0070937 // CRD-mediated mRNA stability complex // inferred from electronic annotation /// 0070937 // CRD-mediated mRNA stability complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005215 // transporter activity // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1370172_at AA892254 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892254 /DB_XREF=gi:3019133 /DB_XREF=EST196057 /CLONE=RKIAO24 /FEA=FLmRNA /CNT=56 /TID=Rn.10488.1 /TIER=Stack /STK=12 /UG=Rn.10488 /LL=24787 /UG_GENE=Sod2 /UG_TITLE=Superoxide dismutase 2, mitochondrial /FL=gb:NM_017051.1 AA892254 superoxide dismutase 2, mitochondrial Sod2 24787 NM_017051 0000302 // response to reactive oxygen species // not recorded /// 0000302 // response to reactive oxygen species // inferred from electronic annotation /// 0000303 // response to superoxide // inferred from electronic annotation /// 0000303 // response to superoxide // not recorded /// 0001306 // age-dependent response to oxidative stress // not recorded /// 0001306 // age-dependent response to oxidative stress // inferred from electronic annotation /// 0001315 // age-dependent response to reactive oxygen species // not recorded /// 0001315 // age-dependent response to reactive oxygen species // inferred from sequence or structural similarity /// 0001315 // age-dependent response to reactive oxygen species // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0003032 // detection of oxygen // inferred from electronic annotation /// 0003032 // detection of oxygen // not recorded /// 0003069 // vasodilation by acetylcholine involved in regulation of systemic arterial blood pressure // inferred from electronic annotation /// 0003069 // vasodilation by acetylcholine involved in regulation of systemic arterial blood pressure // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006749 // glutathione metabolic process // inferred from electronic annotation /// 0006749 // glutathione metabolic process // not recorded /// 0006801 // superoxide metabolic process // not recorded /// 0006801 // superoxide metabolic process // inferred from sequence or structural similarity /// 0006801 // superoxide metabolic process // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0006950 // response to stress // inferred from expression pattern /// 0006950 // response to stress // inferred from mutant phenotype /// 0006979 // response to oxidative stress // not recorded /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007568 // aging // inferred from expression pattern /// 0007605 // sensory perception of sound // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008152 // metabolic process // not recorded /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008217 // regulation of blood pressure // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0010042 // response to manganese ion // inferred from expression pattern /// 0010043 // response to zinc ion // inferred from expression pattern /// 0010269 // response to selenium ion // inferred from expression pattern /// 0010332 // response to gamma radiation // inferred from electronic annotation /// 0010332 // response to gamma radiation // not recorded /// 0014823 // response to activity // inferred from electronic annotation /// 0014823 // response to activity // inferred from expression pattern /// 0014823 // response to activity // not recorded /// 0019430 // removal of superoxide radicals // inferred from direct assay /// 0019430 // removal of superoxide radicals // not recorded /// 0019430 // removal of superoxide radicals // traceable author statement /// 0019430 // removal of superoxide radicals // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // not recorded /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded /// 0031667 // response to nutrient levels // inferred from direct assay /// 0032364 // oxygen homeostasis // inferred from electronic annotation /// 0032364 // oxygen homeostasis // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033591 // response to L-ascorbic acid // inferred from expression pattern /// 0034021 // response to silicon dioxide // inferred from expression pattern /// 0042311 // vasodilation // not recorded /// 0042311 // vasodilation // inferred from electronic annotation /// 0042493 // response to drug // inferred from direct assay /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // not recorded /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0042554 // superoxide anion generation // inferred from electronic annotation /// 0042554 // superoxide anion generation // not recorded /// 0042743 // hydrogen peroxide metabolic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045429 // positive regulation of nitric oxide biosynthetic process // not recorded /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // not recorded /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0048147 // negative regulation of fibroblast proliferation // inferred from electronic annotation /// 0048147 // negative regulation of fibroblast proliferation // not recorded /// 0048666 // neuron development // inferred from electronic annotation /// 0048666 // neuron development // not recorded /// 0048678 // response to axon injury // inferred from electronic annotation /// 0048678 // response to axon injury // not recorded /// 0048773 // erythrophore differentiation // inferred from electronic annotation /// 0048773 // erythrophore differentiation // not recorded /// 0050665 // hydrogen peroxide biosynthetic process // inferred from direct assay /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051289 // protein homotetramerization // inferred from electronic annotation /// 0051289 // protein homotetramerization // not recorded /// 0051602 // response to electrical stimulus // inferred from expression pattern /// 0051881 // regulation of mitochondrial membrane potential // inferred from electronic annotation /// 0051881 // regulation of mitochondrial membrane potential // not recorded /// 0055072 // iron ion homeostasis // inferred from electronic annotation /// 0055072 // iron ion homeostasis // not recorded /// 0055093 // response to hyperoxia // inferred from electronic annotation /// 0055093 // response to hyperoxia // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0071361 // cellular response to ethanol // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // non-traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0004784 // superoxide dismutase activity // inferred from direct assay /// 0004784 // superoxide dismutase activity // not recorded /// 0004784 // superoxide dismutase activity // inferred from sequence or structural similarity /// 0004784 // superoxide dismutase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0019825 // oxygen binding // inferred from direct assay /// 0030145 // manganese ion binding // inferred from direct assay /// 0030145 // manganese ion binding // not recorded /// 0030145 // manganese ion binding // inferred from sequence or structural similarity /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1370173_at BG671549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671549 /DB_XREF=gi:13893648 /DB_XREF=DRNBUB09 /CLONE=DRNBUB09 /FEA=FLmRNA /CNT=56 /TID=Rn.10488.1 /TIER=ConsEnd /STK=0 /UG=Rn.10488 /LL=24787 /UG_GENE=Sod2 /UG_TITLE=Superoxide dismutase 2, mitochondrial /FL=gb:NM_017051.1 BG671549 superoxide dismutase 2, mitochondrial Sod2 24787 NM_017051 0000302 // response to reactive oxygen species // not recorded /// 0000302 // response to reactive oxygen species // inferred from electronic annotation /// 0000303 // response to superoxide // inferred from electronic annotation /// 0000303 // response to superoxide // not recorded /// 0001306 // age-dependent response to oxidative stress // not recorded /// 0001306 // age-dependent response to oxidative stress // inferred from electronic annotation /// 0001315 // age-dependent response to reactive oxygen species // not recorded /// 0001315 // age-dependent response to reactive oxygen species // inferred from sequence or structural similarity /// 0001315 // age-dependent response to reactive oxygen species // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0003032 // detection of oxygen // inferred from electronic annotation /// 0003032 // detection of oxygen // not recorded /// 0003069 // vasodilation by acetylcholine involved in regulation of systemic arterial blood pressure // inferred from electronic annotation /// 0003069 // vasodilation by acetylcholine involved in regulation of systemic arterial blood pressure // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006749 // glutathione metabolic process // inferred from electronic annotation /// 0006749 // glutathione metabolic process // not recorded /// 0006801 // superoxide metabolic process // not recorded /// 0006801 // superoxide metabolic process // inferred from sequence or structural similarity /// 0006801 // superoxide metabolic process // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0006950 // response to stress // inferred from expression pattern /// 0006950 // response to stress // inferred from mutant phenotype /// 0006979 // response to oxidative stress // not recorded /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007568 // aging // inferred from expression pattern /// 0007605 // sensory perception of sound // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008152 // metabolic process // not recorded /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008217 // regulation of blood pressure // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0010042 // response to manganese ion // inferred from expression pattern /// 0010043 // response to zinc ion // inferred from expression pattern /// 0010269 // response to selenium ion // inferred from expression pattern /// 0010332 // response to gamma radiation // inferred from electronic annotation /// 0010332 // response to gamma radiation // not recorded /// 0014823 // response to activity // inferred from electronic annotation /// 0014823 // response to activity // inferred from expression pattern /// 0014823 // response to activity // not recorded /// 0019430 // removal of superoxide radicals // inferred from direct assay /// 0019430 // removal of superoxide radicals // not recorded /// 0019430 // removal of superoxide radicals // traceable author statement /// 0019430 // removal of superoxide radicals // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // not recorded /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded /// 0031667 // response to nutrient levels // inferred from direct assay /// 0032364 // oxygen homeostasis // inferred from electronic annotation /// 0032364 // oxygen homeostasis // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033591 // response to L-ascorbic acid // inferred from expression pattern /// 0034021 // response to silicon dioxide // inferred from expression pattern /// 0042311 // vasodilation // not recorded /// 0042311 // vasodilation // inferred from electronic annotation /// 0042493 // response to drug // inferred from direct assay /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // not recorded /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0042554 // superoxide anion generation // inferred from electronic annotation /// 0042554 // superoxide anion generation // not recorded /// 0042743 // hydrogen peroxide metabolic process // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045429 // positive regulation of nitric oxide biosynthetic process // not recorded /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // not recorded /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0048147 // negative regulation of fibroblast proliferation // inferred from electronic annotation /// 0048147 // negative regulation of fibroblast proliferation // not recorded /// 0048666 // neuron development // inferred from electronic annotation /// 0048666 // neuron development // not recorded /// 0048678 // response to axon injury // inferred from electronic annotation /// 0048678 // response to axon injury // not recorded /// 0048773 // erythrophore differentiation // inferred from electronic annotation /// 0048773 // erythrophore differentiation // not recorded /// 0050665 // hydrogen peroxide biosynthetic process // inferred from direct assay /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051289 // protein homotetramerization // inferred from electronic annotation /// 0051289 // protein homotetramerization // not recorded /// 0051602 // response to electrical stimulus // inferred from expression pattern /// 0051881 // regulation of mitochondrial membrane potential // inferred from electronic annotation /// 0051881 // regulation of mitochondrial membrane potential // not recorded /// 0055072 // iron ion homeostasis // inferred from electronic annotation /// 0055072 // iron ion homeostasis // not recorded /// 0055093 // response to hyperoxia // inferred from electronic annotation /// 0055093 // response to hyperoxia // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0071361 // cellular response to ethanol // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // non-traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0004784 // superoxide dismutase activity // inferred from direct assay /// 0004784 // superoxide dismutase activity // not recorded /// 0004784 // superoxide dismutase activity // inferred from sequence or structural similarity /// 0004784 // superoxide dismutase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0019825 // oxygen binding // inferred from direct assay /// 0030145 // manganese ion binding // inferred from direct assay /// 0030145 // manganese ion binding // not recorded /// 0030145 // manganese ion binding // inferred from sequence or structural similarity /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1370174_at BI284349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284349 /DB_XREF=gi:14936945 /DB_XREF=UI-R-CX0s-cco-b-05-0-UI.s1 /CLONE=UI-R-CX0s-cco-b-05-0-UI /FEA=FLmRNA /CNT=17 /TID=Rn.2232.1 /TIER=Stack /STK=12 /UG=Rn.2232 /LL=171071 /UG_GENE=Myd116 /UG_TITLE=myeloid differentiation primary response gene 116 /FL=gb:NM_133546.1 gb:AF020618.1 BI284349 protein phosphatase 1, regulatory (inhibitor) subunit 15A Ppp1r15a 171071 NM_133546 0006417 // regulation of translation // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370175_a_at AI177799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177799 /DB_XREF=gi:3728437 /DB_XREF=EST221442 /CLONE=RPLCG43 /FEA=FLmRNA /CNT=19 /TID=Rn.9637.1 /TIER=Stack /STK=11 /UG=Rn.9637 /LL=171018 /UG_GENE=CIZ /UG_TITLE=Cas-associated zinc finger protein /FL=gb:NM_133429.1 gb:AF216804.1 AI177799 zinc finger protein 384 Zfp384 171018 NM_001034830 /// NM_001034831 /// NM_133429 0006350 // transcription // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005925 // focal adhesion // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from mutant phenotype /// 0042156 // zinc-mediated transcriptional activator activity // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation 1370176_at BG378620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378620 /DB_XREF=gi:13303092 /DB_XREF=UI-R-CV1-bvr-f-04-0-UI.s1 /CLONE=UI-R-CV1-bvr-f-04-0-UI /FEA=FLmRNA /CNT=20 /TID=Rn.22429.1 /TIER=Stack /STK=11 /UG=Rn.22429 /UG_TITLE=Rattus norvegicus O-GlcNAc transferase-interacting protein of 98 kDa mRNA, complete cds /FL=gb:AF474163.1 gb:NM_133560.1 BG378620 trafficking protein, kinesin binding 2 Trak2 171086 NM_133560 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006493 // protein O-linked glycosylation // inferred from direct assay /// 0006605 // protein targeting // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0050811 // GABA receptor binding // inferred from direct assay /// 0050811 // GABA receptor binding // inferred from mutant phenotype 1370177_at AI548856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548856 /DB_XREF=gi:4466344 /DB_XREF=UI-R-C3-tz-e-10-0-UI.s1 /CLONE=UI-R-C3-tz-e-10-0-UI /FEA=FLmRNA /CNT=16 /TID=Rn.10677.1 /TIER=Stack /STK=10 /UG=Rn.10677 /LL=25066 /UG_GENE=Tage4 /UG_TITLE=Tumor-associated glycoprotein pE4 /FL=gb:L12025.1 gb:NM_017076.1 AI548856 poliovirus receptor PVR 25066 NM_017076 0002860 // positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target // not recorded /// 0002860 // positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0042271 // susceptibility to natural killer cell mediated cytotoxicity // not recorded /// 0042271 // susceptibility to natural killer cell mediated cytotoxicity // inferred from electronic annotation /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // not recorded /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // inferred from electronic annotation /// 0060370 // susceptibility to T cell mediated cytotoxicity // not recorded /// 0060370 // susceptibility to T cell mediated cytotoxicity // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0001618 // viral receptor activity // inferred from mutant phenotype /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0050839 // cell adhesion molecule binding // not recorded /// 0050839 // cell adhesion molecule binding // inferred from electronic annotation 1370178_at BG373973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373973 /DB_XREF=gi:13298445 /DB_XREF=UI-R-CV1-bsl-a-05-0-UI.s1 /CLONE=UI-R-CV1-bsl-a-05-0-UI /FEA=FLmRNA /CNT=17 /TID=Rn.10739.1 /TIER=Stack /STK=10 /UG=Rn.10739 /LL=116600 /UG_GENE=Cacnb2 /UG_TITLE=calcium channel, voltage-dependent, beta 2 subunit /FL=gb:NM_053851.1 gb:M80545.1 BG373973 calcium channel, voltage-dependent, beta 2 subunit Cacnb2 116600 NM_053851 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // traceable author statement /// 0007268 // synaptic transmission // not recorded /// 0007601 // visual perception // not recorded 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // inferred from direct assay /// 0005891 // voltage-gated calcium channel complex // inferred from mutant phenotype /// 0005891 // voltage-gated calcium channel complex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from direct assay /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // traceable author statement /// 0005246 // calcium channel regulator activity // inferred from direct assay /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370179_at AI102949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102949 /DB_XREF=gi:3707582 /DB_XREF=EST212238 /CLONE=REMBV34 /FEA=FLmRNA /CNT=53 /TID=Rn.3560.1 /TIER=Stack /STK=9 /UG=Rn.3560 /LL=170714 /UG_GENE=km23 /UG_TITLE=dynein-associated protein RKM23 /FL=gb:NM_131910.2 gb:AY026512.1 gb:AF073839.2 AI102949 dynein light chain roadblock-type 1 Dynlrb1 170714 NM_131910 0006810 // transport // inferred from electronic annotation /// 0007632 // visual behavior // inferred from direct assay /// 0008090 // retrograde axon cargo transport // non-traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005868 // cytoplasmic dynein complex // not recorded /// 0005868 // cytoplasmic dynein complex // inferred from sequence or structural similarity /// 0005874 // microtubule // inferred from electronic annotation /// 0030286 // dynein complex // inferred from electronic annotation 0003774 // motor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1370180_at AA891213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891213 /DB_XREF=gi:3018092 /DB_XREF=EST195016 /CLONE=RHEAQ58 /FEA=FLmRNA /CNT=67 /TID=Rn.8426.1 /TIER=Stack /STK=8 /UG=Rn.8426 /LL=94267 /UG_GENE=Nudt4 /UG_TITLE=diphosphoinositol polyphosphate phosphohydolase type II /FL=gb:NM_053598.1 gb:AF253473.1 AA891213 nudix (nucleoside diphosphate linked moiety X)-type motif 4 Nudt4 94267 NM_053598 0030384 // phosphoinositide metabolic process // non-traceable author statement 0005737 // cytoplasm // inferred from electronic annotation 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // not recorded /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // inferred from sequence or structural similarity /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370181_at BF281403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281403 /DB_XREF=gi:11212473 /DB_XREF=EST445994 /CLONE=RGIAE32 /FEA=FLmRNA /CNT=16 /TID=Rn.3016.1 /TIER=Stack /STK=9 /UG=Rn.3016 /LL=25532 /UG_GENE=Rab4 /UG_TITLE=Ras-related small GTP binding protein 4 /FL=gb:NM_013019.1 BF281403 RAB4A, member RAS oncogene family Rab4a 25532 NM_013019 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0015031 // protein transport // not recorded /// 0030100 // regulation of endocytosis // inferred from electronic annotation /// 0030100 // regulation of endocytosis // not recorded /// 0032482 // Rab protein signal transduction // inferred by curator /// 0032482 // Rab protein signal transduction // inferred from mutant phenotype 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0032593 // insulin-responsive compartment // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001671 // ATPase activator activity // inferred from direct assay /// 0003924 // GTPase activity // inferred from direct assay /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0005525 // GTP binding // traceable author statement /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0008565 // protein transporter activity // not recorded /// 0019003 // GDP binding // not recorded /// 0019003 // GDP binding // inferred from sequence or structural similarity /// 0019003 // GDP binding // inferred from electronic annotation /// 0019905 // syntaxin binding // inferred from physical interaction /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction /// 0051117 // ATPase binding // inferred from direct assay 1370182_at AI574884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI574884 /DB_XREF=gi:4544880 /DB_XREF=UI-R-G0-uf-b-12-0-UI.s1 /CLONE=UI-R-G0-uf-b-12-0-UI /FEA=FLmRNA /CNT=18 /TID=Rn.11044.1 /TIER=Stack /STK=9 /UG=Rn.11044 /LL=29714 /UG_GENE=Ptprn2 /UG_TITLE=protein tyrosine phosphatase, receptor-type, N polypeptide 2 /FL=gb:NM_031600.1 gb:U73458.1 AI574884 protein tyrosine phosphatase, receptor type, N polypeptide 2 Ptprn2 29714 NM_031600 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0034260 // negative regulation of GTPase activity // inferred from direct assay 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay /// 0030141 // stored secretory granule // not recorded /// 0030141 // stored secretory granule // inferred from electronic annotation /// 0043195 // terminal button // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1370183_at BI303285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303285 /DB_XREF=gi:14979565 /DB_XREF=UI-R-DQ0-ciz-n-11-0-UI.s1 /CLONE=UI-R-DQ0-ciz-n-11-0-UI /FEA=FLmRNA /CNT=16 /TID=Rn.9354.1 /TIER=Stack /STK=9 /UG=Rn.9354 /LL=25255 /UG_GENE=Dyrk1a /UG_TITLE=dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a /FL=gb:NM_012791.1 BI303285 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A Dyrk1a 25255 NM_012791 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007399 // nervous system development // traceable author statement /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0030100 // regulation of endocytosis // traceable author statement /// 0046777 // protein autophosphorylation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0043621 // protein self-association // not recorded /// 0043621 // protein self-association // inferred from sequence or structural similarity /// 0043621 // protein self-association // inferred from electronic annotation 1370184_at BG666614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666614 /DB_XREF=gi:13888536 /DB_XREF=DRABPG05 /CLONE=DRABPG05 /FEA=FLmRNA /CNT=109 /TID=Rn.11675.1 /TIER=Stack /STK=9 /UG=Rn.11675 /LL=29271 /UG_GENE=Cfl1 /UG_TITLE=cofilin 1, non-muscle /FL=gb:NM_017147.1 BG666614 cofilin 1, non-muscle Cfl1 29271 NM_017147 0000910 // cytokinesis // not recorded /// 0001755 // neural crest cell migration // not recorded /// 0001842 // neural fold formation // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006606 // protein import into nucleus // inferred from mutant phenotype /// 0006928 // cellular component movement // not recorded /// 0007015 // actin filament organization // not recorded /// 0009615 // response to virus // not recorded /// 0030010 // establishment of cell polarity // not recorded /// 0030030 // cell projection organization // inferred from direct assay /// 0030836 // positive regulation of actin filament depolymerization // not recorded /// 0043200 // response to amino acid stimulus // not recorded /// 0045792 // negative regulation of cell size // inferred from direct assay /// 0051789 // response to protein stimulus // inferred from expression pattern 0005576 // extracellular region // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from direct assay /// 0030864 // cortical actin cytoskeleton // not recorded /// 0031252 // cell leading edge // inferred from direct assay 0003779 // actin binding // inferred from mutant phenotype /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370185_at BF392830 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392830 /DB_XREF=gi:11377689 /DB_XREF=UI-R-CA0-bfo-g-06-0-UI.s1 /CLONE=UI-R-CA0-bfo-g-06-0-UI /FEA=FLmRNA /CNT=34 /TID=Rn.10703.1 /TIER=Stack /STK=8 /UG=Rn.10703 /LL=84008 /UG_GENE=Cntnap1 /UG_TITLE=contactin associated protein 1 /FL=gb:U87224.1 gb:AF000114.1 gb:NM_032061.1 BF392830 contactin associated protein 1 Cntnap1 84008 NM_032061 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0042552 // myelination // traceable author statement 0008076 // voltage-gated potassium channel complex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0033270 // paranode region of axon // inferred from direct assay /// 0033270 // paranode region of axon // not recorded 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0017124 // SH3 domain binding // inferred from direct assay /// 0017124 // SH3 domain binding // inferred from electronic annotation 1370186_at AI599350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599350 /DB_XREF=gi:4608398 /DB_XREF=EST251053 /CLONE=REMEQ59 /FEA=FLmRNA /CNT=19 /TID=Rn.13686.1 /TIER=Stack /STK=8 /UG=Rn.13686 /LL=24967 /UG_GENE=Psmb9 /UG_TITLE=Low molecular mass polypeptide 2 /FL=gb:NM_012708.1 AI599350 proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2) Psmb9 24967 NM_012708 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0019882 // antigen processing and presentation // not recorded /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005839 // proteasome core complex // inferred from electronic annotation 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1370187_at AI502661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502661 /DB_XREF=gi:4400512 /DB_XREF=UI-R-C1-la-f-06-0-UI.s1 /CLONE=UI-R-C1-la-f-06-0-UI /FEA=FLmRNA /CNT=18 /TID=Rn.9732.1 /TIER=Stack /STK=8 /UG=Rn.9732 /LL=24624 /UG_GENE=Pccb /UG_TITLE=Propionyl Coenzyme A carboxylase, beta polypeptide /FL=gb:M14634.1 gb:NM_017030.1 AI502661 propionyl coenzyme A carboxylase, beta polypeptide Pccb 24624 NM_017030 0009062 // fatty acid catabolic process // traceable author statement /// 0009063 // cellular amino acid catabolic process // traceable author statement 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004658 // propionyl-CoA carboxylase activity // traceable author statement /// 0004658 // propionyl-CoA carboxylase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1370188_at AW252670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252670 /DB_XREF=gi:6596261 /DB_XREF=UI-R-BJ0-aeb-c-02-0-UI.s1 /CLONE=UI-R-BJ0-aeb-c-02-0-UI /FEA=FLmRNA /CNT=56 /TID=Rn.8538.1 /TIER=Stack /STK=7 /UG=Rn.8538 /LL=117259 /UG_GENE=Sfrs10 /UG_TITLE=splicing factor, arginineserine-rich (transformer 2 Drosophila homolog) 10 /FL=gb:D49708.1 gb:NM_057119.1 AW252670 transformer 2 beta homolog (Drosophila) Tra2b 117259 NM_057119 0000302 // response to reactive oxygen species // inferred from expression pattern /// 0000398 // nuclear mRNA splicing, via spliceosome // not recorded /// 0000398 // nuclear mRNA splicing, via spliceosome // inferred from sequence or structural similarity /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370189_at BI290979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290979 /DB_XREF=gi:14950086 /DB_XREF=UI-R-DK0-cgb-h-12-0-UI.s1 /CLONE=UI-R-DK0-cgb-h-12-0-UI /FEA=FLmRNA /CNT=56 /TID=Rn.8538.1 /TIER=ConsEnd /STK=1 /UG=Rn.8538 /LL=117259 /UG_GENE=Sfrs10 /UG_TITLE=splicing factor, arginineserine-rich (transformer 2 Drosophila homolog) 10 /FL=gb:D49708.1 gb:NM_057119.1 BI290979 transformer 2 beta homolog (Drosophila) Tra2b 117259 NM_057119 0000302 // response to reactive oxygen species // inferred from expression pattern /// 0000398 // nuclear mRNA splicing, via spliceosome // not recorded /// 0000398 // nuclear mRNA splicing, via spliceosome // inferred from sequence or structural similarity /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370190_at BG663226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663226 /DB_XREF=gi:13885148 /DB_XREF=DRAAAFC05 /CLONE=DRAAAFC05 /FEA=FLmRNA /CNT=42 /TID=Rn.29857.1 /TIER=ConsEnd /STK=0 /UG=Rn.29857 /LL=117056 /UG_GENE=H3f3b /UG_TITLE=H3 histone, family 3B /FL=gb:NM_053985.1 BG663226 H3 histone, family 3B H3f3b 117056 NM_053985 0006334 // nucleosome assembly // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1370191_at AI411263 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411263 /DB_XREF=gi:4254767 /DB_XREF=EST239557 /CLONE=RKIEO32 /FEA=FLmRNA /CNT=37 /TID=Rn.6290.1 /TIER=Stack /STK=7 /UG=Rn.6290 /LL=58961 /UG_GENE=Oazi /UG_TITLE=ornithine decarboxylase antizyme inhibitor /FL=gb:NM_022585.1 gb:D89983.1 AI411263 antizyme inhibitor 1 Azin1 58961 NM_022585 0006596 // polyamine biosynthetic process // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008073 // ornithine decarboxylase inhibitor activity // inferred from direct assay /// 0042978 // ornithine decarboxylase activator activity // inferred from electronic annotation /// 0042978 // ornithine decarboxylase activator activity // not recorded 1370192_at BF283010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283010 /DB_XREF=gi:11214080 /DB_XREF=EST447601 /CLONE=RGIDW26 /FEA=FLmRNA /CNT=32 /TID=Rn.54570.1 /TIER=Stack /STK=7 /UG=Rn.54570 /LL=65033 /UG_GENE=Stx12 /UG_TITLE=syntaxin 12 /FL=gb:AF044581.1 gb:NM_022939.1 gb:AF035632.1 BF283010 syntaxin 12 Stx12 65033 NM_022939 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0033344 // cholesterol efflux // not recorded /// 0050821 // protein stabilization // not recorded 0016020 // membrane // inferred from electronic annotation /// 0045121 // membrane raft // not recorded /// 0045335 // phagocytic vesicle // not recorded 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1370193_at AI172261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172261 /DB_XREF=gi:4134729 /DB_XREF=EST218261 /CLONE=RMUBX03 /FEA=FLmRNA /CNT=24 /TID=Rn.9459.1 /TIER=Stack /STK=7 /UG=Rn.9459 /LL=29463 /UG_GENE=Ptp4a1 /UG_TITLE=protein tyrosine phosphatase 4a1 /FL=gb:NM_031579.1 gb:L27843.1 gb:AY062269.1 AI172261 protein tyrosine phosphatase 4a1 Ptp4a1 29463 NM_031579 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1370194_at AA945699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945699 /DB_XREF=gi:3105615 /DB_XREF=EST201198 /CLONE=RLUAS08 /FEA=FLmRNA /CNT=25 /TID=Rn.14789.1 /TIER=Stack /STK=7 /UG=Rn.14789 /LL=64630 /UG_GENE=Snap23 /UG_TITLE=synaptosomal-associated protein, 23 kD /FL=gb:NM_022689.1 gb:AF052596.1 AA945699 synaptosomal-associated protein 23 Snap23 64630 NM_022689 0006461 // protein complex assembly // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // not recorded /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0006944 // cellular membrane fusion // inferred from direct assay /// 0015031 // protein transport // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from mutant phenotype /// 0017157 // regulation of exocytosis // inferred from mutant phenotype 0001950 // plasma membrane enriched fraction // not recorded /// 0005792 // microsome // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031201 // SNARE complex // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0042581 // specific granule // not recorded /// 0042582 // azurophil granule // not recorded /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0019905 // syntaxin binding // inferred from physical interaction 1370195_at AI408945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408945 /DB_XREF=gi:4252449 /DB_XREF=EST237236 /CLONE=RKIDR37 /FEA=FLmRNA /CNT=25 /TID=Rn.14789.1 /TIER=Stack /STK=6 /UG=Rn.14789 /LL=64630 /UG_GENE=Snap23 /UG_TITLE=synaptosomal-associated protein, 23 kD /FL=gb:NM_022689.1 gb:AF052596.1 AI408945 synaptosomal-associated protein 23 Snap23 64630 NM_022689 0006461 // protein complex assembly // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // not recorded /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0006944 // cellular membrane fusion // inferred from direct assay /// 0015031 // protein transport // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from mutant phenotype /// 0017157 // regulation of exocytosis // inferred from mutant phenotype 0001950 // plasma membrane enriched fraction // not recorded /// 0005792 // microsome // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031201 // SNARE complex // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0042581 // specific granule // not recorded /// 0042582 // azurophil granule // not recorded /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0019905 // syntaxin binding // inferred from physical interaction 1370196_at AW532051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532051 /DB_XREF=gi:7174465 /DB_XREF=UI-R-BS0-amn-e-11-0-UI.s1 /CLONE=UI-R-BS0-amn-e-11-0-UI /FEA=FLmRNA /CNT=12 /TID=Rn.14548.1 /TIER=Stack /STK=7 /UG=Rn.14548 /LL=83614 /UG_GENE=83614 /UG_TITLE=potassium channel regulatory protein KChAP /FL=gb:AF032872.2 gb:NM_031784.2 AW532051 protein inhibitor of activated STAT, 3 Pias3 83614 NM_031784 0006350 // transcription // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0016925 // protein sumoylation // not recorded /// 0016925 // protein sumoylation // inferred from sequence or structural similarity /// 0016925 // protein sumoylation // inferred from electronic annotation /// 0033235 // positive regulation of protein sumoylation // inferred from electronic annotation /// 0033235 // positive regulation of protein sumoylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045838 // positive regulation of membrane potential // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from direct assay /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // not recorded /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0015459 // potassium channel regulator activity // inferred from direct assay /// 0019789 // SUMO ligase activity // inferred from electronic annotation /// 0019789 // SUMO ligase activity // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from direct assay 1370197_a_at AW533298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533298 /DB_XREF=gi:7175712 /DB_XREF=UI-R-BU0-anf-c-03-0-UI.s1 /CLONE=UI-R-BU0-anf-c-03-0-UI /FEA=FLmRNA /CNT=10 /TID=Rn.1109.1 /TIER=Stack /STK=7 /UG=Rn.1109 /LL=25522 /UG_GENE=Prkcz /UG_TITLE=protein kinase C, zeta /FL=gb:J04532.1 gb:NM_022507.1 AW533298 protein kinase C, zeta Prkcz 25522 NM_022507 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0000226 // microtubule cytoskeleton organization // not recorded /// 0001954 // positive regulation of cell-matrix adhesion // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from direct assay /// 0007166 // cell surface receptor linked signaling pathway // inferred from mutant phenotype /// 0007616 // long-term memory // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008286 // insulin receptor signaling pathway // inferred from mutant phenotype /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0018105 // peptidyl-serine phosphorylation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0031333 // negative regulation of protein complex assembly // inferred from electronic annotation /// 0031333 // negative regulation of protein complex assembly // not recorded /// 0031532 // actin cytoskeleton reorganization // inferred from mutant phenotype /// 0031584 // activation of phospholipase D activity // inferred from mutant phenotype /// 0032148 // activation of protein kinase B activity // inferred from mutant phenotype /// 0032869 // cellular response to insulin stimulus // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0046326 // positive regulation of glucose import // inferred from mutant phenotype /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from electronic annotation /// 0046627 // negative regulation of insulin receptor signaling pathway // not recorded /// 0047496 // vesicle transport along microtubule // inferred from mutant phenotype /// 0050732 // negative regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050732 // negative regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050806 // positive regulation of synaptic transmission // inferred from mutant phenotype /// 0051222 // positive regulation of protein transport // inferred from mutant phenotype /// 0051291 // protein heterooligomerization // inferred from physical interaction /// 0051346 // negative regulation of hydrolase activity // inferred from direct assay /// 0051899 // membrane depolarization // inferred from mutant phenotype /// 0060081 // membrane hyperpolarization // inferred from mutant phenotype 0005625 // soluble fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005923 // tight junction // inferred from electronic annotation /// 0005923 // tight junction // not recorded /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0031941 // filamentous actin // inferred from direct assay /// 0043234 // protein complex // not recorded /// 0045121 // membrane raft // inferred from direct assay /// 0045179 // apical cortex // inferred from electronic annotation /// 0045179 // apical cortex // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // traceable author statement /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0015459 // potassium channel regulator activity // inferred from mutant phenotype /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0043274 // phospholipase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1370198_at AJ243304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ243304.2 /DB_XREF=gi:12188750 /GEN=trisk 95 /FEA=FLmRNA /CNT=11 /TID=Rn.41863.1 /TIER=Stack /STK=7 /UG=Rn.41863 /LL=59299 /DEF=Rattus norvegicus mRNA for triadin 95 kDa (TRISK 95). /PROD=triadin 95kDa (TRISK 95) /FL=gb:NM_021666.1 AJ243304 triadin Trdn 59299 NM_021666 0006874 // cellular calcium ion homeostasis // inferred from mutant phenotype /// 0006874 // cellular calcium ion homeostasis // non-traceable author statement /// 0010880 // regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014902 // myotube differentiation // inferred from expression pattern /// 0032235 // negative regulation of calcium ion transport via store-operated calcium channel activity // inferred from mutant phenotype 0005737 // cytoplasm // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0014701 // junctional sarcoplasmic reticulum membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // traceable author statement 1370199_at Z36277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Z36277.1 /DB_XREF=gi:530336 /FEA=FLmRNA /CNT=83 /TID=Rn.1492.1 /TIER=Stack /STK=6 /UG=Rn.1492 /LL=84595 /UG_GENE=Nucb /DEF=R.norvegicus mRNA for calcium-binding protein. /PROD=Calcium binding protein /FL=gb:AF336828.1 gb:NM_053463.1 Z36277 nucleobindin 1 Nucb1 84595 NM_053463 0005737 // cytoplasm // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1370200_at BI284411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284411 /DB_XREF=gi:14937064 /DB_XREF=UI-R-CX0s-cco-g-09-0-UI.s1 /CLONE=UI-R-CX0s-cco-g-09-0-UI /FEA=FLmRNA /CNT=68 /TID=Rn.55106.1 /TIER=ConsEnd /STK=3 /UG=Rn.55106 /LL=24399 /UG_GENE=Glud1 /UG_TITLE=Glutamate dehydrogenase /FL=gb:NM_012570.1 BI284411 glutamate dehydrogenase 1 Glud1 24399 NM_012570 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006537 // glutamate biosynthetic process // not recorded /// 0006538 // glutamate catabolic process // not recorded /// 0006538 // glutamate catabolic process // traceable author statement /// 0007616 // long-term memory // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0019459 // glutamate deamidation // not recorded /// 0032024 // positive regulation of insulin secretion // inferred from electronic annotation /// 0032024 // positive regulation of insulin secretion // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004352 // glutamate dehydrogenase activity // inferred from direct assay /// 0004352 // glutamate dehydrogenase activity // not recorded /// 0004353 // glutamate dehydrogenase [NAD(P)+] activity // inferred from electronic annotation /// 0004353 // glutamate dehydrogenase [NAD(P)+] activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0043531 // ADP binding // not recorded /// 0070403 // NAD binding // not recorded /// 0070728 // leucine binding // not recorded 1370201_at X04280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X04280.1 /DB_XREF=gi:57300 /FEA=FLmRNA /CNT=27 /TID=Rn.3908.1 /TIER=Stack /STK=6 /UG=Rn.3908 /LL=83839 /UG_GENE=Calb1 /UG_TITLE=cerebellar Ca-binding protein, spot 35 protein /DEF=Rat mRNA for cerebellar Ca-binding protein, spot 35 protein. /FL=gb:NM_031984.1 gb:M31178.1 X04280 calbindin 1 Calb1 83839 NM_031984 0001657 // ureteric bud development // not recorded /// 0007611 // learning or memory // inferred from expression pattern /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0042359 // vitamin D metabolic process // traceable author statement /// 0048167 // regulation of synaptic plasticity // inferred from mutant phenotype 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005499 // vitamin D binding // inferred from electronic annotation /// 0005509 // calcium ion binding // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation 1370202_at BG378637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378637 /DB_XREF=gi:13303109 /DB_XREF=UI-R-CV1-bvr-g-10-0-UI.s1 /CLONE=UI-R-CV1-bvr-g-10-0-UI /FEA=FLmRNA /CNT=14 /TID=Rn.11377.1 /TIER=Stack /STK=6 /UG=Rn.11377 /LL=24913 /UG_GENE=Hrev107 /UG_TITLE=Hras-revertant gene 107 /FL=gb:NM_017060.1 BG378637 phospholipase A2, group XVI Pla2g16 24913 NM_017060 0016042 // lipid catabolic process // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // inferred from mutant phenotype 0005737 // cytoplasm // inferred from mutant phenotype /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004623 // phospholipase A2 activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1370203_at AI408972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408972 /DB_XREF=gi:4252476 /DB_XREF=EST237263 /CLONE=RKIEK33 /FEA=FLmRNA /CNT=23 /TID=Rn.4391.1 /TIER=Stack /STK=6 /UG=Rn.4391 /LL=116675 /UG_GENE=Frag1 /UG_TITLE=FGF receptor activating protein 1 /FL=gb:NM_053895.1 gb:U57715.1 AI408972 1370204_at BG373817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373817 /DB_XREF=gi:13270354 /DB_XREF=UI-R-CV1-bsk-c-05-0-UI.s1 /CLONE=UI-R-CV1-bsk-c-05-0-UI /FEA=FLmRNA /CNT=23 /TID=Rn.4391.1 /TIER=Stack /STK=6 /UG=Rn.4391 /LL=116675 /UG_GENE=Frag1 /UG_TITLE=FGF receptor activating protein 1 /FL=gb:NM_053895.1 gb:U57715.1 BG373817 post-GPI attachment to proteins 2 Pgap2 116675 NM_053895 0006506 // GPI anchor biosynthetic process // inferred from mutant phenotype /// 0006506 // GPI anchor biosynthetic process // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0042770 // signal transduction in response to DNA damage // inferred from electronic annotation /// 0042770 // signal transduction in response to DNA damage // not recorded 0000139 // Golgi membrane // inferred from direct assay /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from mutant phenotype 1370205_at BE118954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118954 /DB_XREF=gi:8511059 /DB_XREF=UI-R-BS1-azw-g-01-0-UI.s1 /CLONE=UI-R-BS1-azw-g-01-0-UI /FEA=FLmRNA /CNT=11 /TID=Rn.45744.1 /TIER=Stack /STK=6 /UG=Rn.45744 /LL=84511 /UG_GENE=Slc21a14 /UG_TITLE=solute carrier family 21 (organic anion transporter), member 14 /FL=gb:AF306546.1 gb:NM_053441.1 BE118954 solute carrier organic anion transporter family, member 1c1 Slco1c1 84511 NM_053441 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015721 // bile acid and bile salt transport // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0015125 // bile acid transmembrane transporter activity // inferred from direct assay 1370206_at BM386997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386997 /DB_XREF=gi:18187050 /DB_XREF=UI-R-CN1-cji-k-03-0-UI.s1 /CLONE=UI-R-CN1-cji-k-03-0-UI /FEA=FLmRNA /CNT=10 /TID=Rn.44831.1 /TIER=Stack /STK=6 /UG=Rn.44831 /LL=63882 /UG_GENE=Asic4 /UG_TITLE=SPASIC protein /FL=gb:NM_022234.1 BM386997 amiloride-sensitive cation channel 4, pituitary Accn4 63882 NM_022234 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // inferred from electronic annotation 1370207_at AI170772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170772 /DB_XREF=gi:3710812 /DB_XREF=EST216711 /CLONE=RMUBB32 /FEA=FLmRNA /CNT=105 /TID=Rn.29258.1 /TIER=Stack /STK=39 /UG=Rn.29258 /LL=171082 /UG_GENE=Atp5g2 /UG_TITLE=ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 2 /FL=gb:D13124.1 gb:NM_133556.1 AI170772 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9) Atp5g2 171082 NM_133556 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from expression pattern 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0033177 // proton-transporting two-sector ATPase complex, proton-transporting domain // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation 0008289 // lipid binding // inferred from electronic annotation /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0046933 // hydrogen ion transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation 1370208_at AI169222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169222 /DB_XREF=gi:3705530 /DB_XREF=EST215057 /CLONE=RKIBP01 /FEA=FLmRNA /CNT=51 /TID=Rn.786.1 /TIER=Stack /STK=32 /UG=Rn.786 /LL=58851 /UG_GENE=Nr1h2 /UG_TITLE=nuclear receptor subfamily 1, group H, member 2 /FL=gb:U20389.1 gb:U14533.1 gb:NM_031626.1 AI169222 nuclear receptor subfamily 1, group H, member 2 Nr1h2 58851 NM_031626 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0007165 // signal transduction // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0010629 // negative regulation of gene expression // inferred from direct assay /// 0010867 // positive regulation of triglyceride biosynthetic process // inferred from electronic annotation /// 0010867 // positive regulation of triglyceride biosynthetic process // not recorded /// 0010875 // positive regulation of cholesterol efflux // inferred from electronic annotation /// 0010875 // positive regulation of cholesterol efflux // not recorded /// 0010884 // positive regulation of lipid storage // inferred from electronic annotation /// 0010884 // positive regulation of lipid storage // not recorded /// 0010887 // negative regulation of cholesterol storage // inferred from electronic annotation /// 0010887 // negative regulation of cholesterol storage // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0032270 // positive regulation of cellular protein metabolic process // inferred from electronic annotation /// 0032270 // positive regulation of cellular protein metabolic process // not recorded /// 0032369 // negative regulation of lipid transport // inferred from electronic annotation /// 0032369 // negative regulation of lipid transport // not recorded /// 0032376 // positive regulation of cholesterol transport // not recorded /// 0032376 // positive regulation of cholesterol transport // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0044255 // cellular lipid metabolic process // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045723 // positive regulation of fatty acid biosynthetic process // inferred from electronic annotation /// 0045723 // positive regulation of fatty acid biosynthetic process // not recorded /// 0045861 // negative regulation of proteolysis // inferred from electronic annotation /// 0045861 // negative regulation of proteolysis // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 0048384 // retinoic acid receptor signaling pathway // inferred from direct assay /// 0048550 // negative regulation of pinocytosis // inferred from electronic annotation /// 0048550 // negative regulation of pinocytosis // not recorded /// 0051006 // positive regulation of lipoprotein lipase activity // inferred from electronic annotation /// 0051006 // positive regulation of lipoprotein lipase activity // not recorded /// 0055088 // lipid homeostasis // inferred from electronic annotation /// 0055088 // lipid homeostasis // not recorded /// 0090108 // positive regulation of high-density lipoprotein particle assembly // inferred from electronic annotation /// 0090108 // positive regulation of high-density lipoprotein particle assembly // not recorded /// 0090187 // positive regulation of pancreatic juice secretion // inferred from electronic annotation /// 0090187 // positive regulation of pancreatic juice secretion // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // not recorded /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // inferred from direct assay /// 0046965 // retinoid X receptor binding // inferred from physical interaction /// 0046965 // retinoid X receptor binding // not recorded /// 0046965 // retinoid X receptor binding // inferred from electronic annotation 1370209_at BE101336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101336 /DB_XREF=gi:8493249 /DB_XREF=UI-R-BJ1-aui-h-01-0-UI.s1 /CLONE=UI-R-BJ1-aui-h-01-0-UI /FEA=FLmRNA /CNT=42 /TID=Rn.19481.1 /TIER=Stack /STK=8 /UG=Rn.19481 /LL=117560 /UG_GENE=Klf9 /UG_TITLE=Kruppel-like factor 9 /FL=gb:D12769.1 gb:NM_057211.1 BE101336 Kruppel-like factor 9 Klf9 117560 NM_057211 0006350 // transcription // inferred from electronic annotation /// 0007566 // embryo implantation // inferred from electronic annotation /// 0007566 // embryo implantation // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0050847 // progesterone receptor signaling pathway // inferred from electronic annotation /// 0050847 // progesterone receptor signaling pathway // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1370210_at BF414025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414025 /DB_XREF=gi:11402014 /DB_XREF=UI-R-BJ2-bol-e-08-0-UI.s1 /CLONE=UI-R-BJ2-bol-e-08-0-UI /FEA=FLmRNA /CNT=21 /TID=Rn.22425.1 /TIER=Stack /STK=16 /UG=Rn.22425 /LL=117582 /UG_GENE=LOC117582 /UG_TITLE=brain specific binding protein /FL=gb:AB028891.1 gb:NM_057212.1 BF414025 transmembrane protein 158 Tmem158 117582 NM_057212 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042277 // peptide binding // inferred from mutant phenotype 1370211_at BE106940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106940 /DB_XREF=gi:8499042 /DB_XREF=UI-R-BT1-asu-h-12-0-UI.s1 /CLONE=UI-R-BT1-asu-h-12-0-UI /FEA=FLmRNA /CNT=32 /TID=Rn.11236.1 /TIER=Stack /STK=15 /UG=Rn.11236 /LL=64356 /UG_GENE=Nrgn /UG_TITLE=neurogranin (protein kinase C substrate, RC3) /FL=gb:L09119.1 gb:NM_024140.2 BE106940 neurogranin Nrgn 64356 NM_024140 0005737 // cytoplasm // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005516 // calmodulin binding // inferred from electronic annotation 1370212_at AW253366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253366 /DB_XREF=gi:6596957 /DB_XREF=UI-R-BJ0-aen-b-01-0-UI.s1 /CLONE=UI-R-BJ0-aen-b-01-0-UI /FEA=FLmRNA /CNT=22 /TID=Rn.55092.1 /TIER=Stack /STK=15 /UG=Rn.55092 /LL=29548 /UG_GENE=Homer3 /UG_TITLE=homer, neuronal immediate early gene, 3 /FL=gb:AB020879.2 gb:NM_053310.1 AW253366 homer homolog 3 (Drosophila) Homer3 29548 NM_053310 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded 1370213_at BI282111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282111 /DB_XREF=gi:14932531 /DB_XREF=UI-R-CU0s-cbw-f-09-0-UI.s1 /CLONE=UI-R-CU0s-cbw-f-09-0-UI /FEA=FLmRNA /CNT=67 /TID=Rn.3181.1 /TIER=Stack /STK=12 /UG=Rn.3181 /LL=29206 /UG_GENE=Nsep1 /UG_TITLE=nuclease sensitive element binding protein 1 /FL=gb:NM_031563.1 gb:M57299.1 gb:M69138.1 BI282111 Y box binding protein 1 Ybx1 500538 NM_031563 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001701 // in utero embryonic development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008380 // RNA splicing // not recorded /// 0008380 // RNA splicing // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from mutant phenotype /// 0070934 // CRD-mediated mRNA stabilization // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0010494 // stress granule // not recorded /// 0010494 // stress granule // inferred from sequence or structural similarity /// 0030425 // dendrite // inferred from direct assay /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0070937 // CRD-mediated mRNA stability complex // not recorded /// 0071204 // histone pre-mRNA 3'end processing complex // not recorded /// 0071204 // histone pre-mRNA 3'end processing complex // inferred from sequence or structural similarity 0002039 // p53 binding // inferred from mutant phenotype /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003697 // single-stranded DNA binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay 1370214_at AI175539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175539 /DB_XREF=gi:3726177 /DB_XREF=EST219094 /CLONE=RMUCO74 /FEA=FLmRNA /CNT=38 /TID=Rn.2005.1 /TIER=Stack /STK=12 /UG=Rn.2005 /LL=25269 /UG_GENE=Pvalb /UG_TITLE=Parvalbumin (calcium binding protein) /FL=gb:NM_022499.1 AI175539 parvalbumin Pvalb 25269 NM_022499 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370215_at AW434057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434057 /DB_XREF=gi:6965364 /DB_XREF=UI-R-BJ0p-afo-g-04-0-UI.s1 /CLONE=UI-R-BJ0p-afo-g-04-0-UI /FEA=FLmRNA /CNT=22 /TID=Rn.6702.1 /TIER=Stack /STK=12 /UG=Rn.6702 /LL=29687 /UG_GENE=C1qb /UG_TITLE=complement component 1, q subcomponent, beta polypeptide /FL=gb:NM_019262.1 AW434057 complement component 1, q subcomponent, B chain C1qb 29687 NM_019262 0006955 // immune response // traceable author statement /// 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0045087 // innate immune response // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005602 // complement component C1 complex // inferred from direct assay 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1370216_at BE112590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112590 /DB_XREF=gi:8504695 /DB_XREF=UI-R-BJ1-avn-d-10-0-UI.s1 /CLONE=UI-R-BJ1-avn-d-10-0-UI /FEA=FLmRNA /CNT=17 /TID=Rn.7807.1 /TIER=Stack /STK=12 /UG=Rn.7807 /LL=25678 /UG_GENE=Ddr1 /UG_TITLE=Discoidin domain receptor (neurotrophic tyrosine kinase, receptor, type 4 (cell adhesion kinase)) /FL=gb:NM_013137.1 BE112590 discoidin domain receptor tyrosine kinase 1 Ddr1 25678 NM_001166022 /// NM_013137 0001558 // regulation of cell growth // inferred from electronic annotation /// 0001558 // regulation of cell growth // not recorded /// 0001952 // regulation of cell-matrix adhesion // inferred from electronic annotation /// 0001952 // regulation of cell-matrix adhesion // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007566 // embryo implantation // inferred from electronic annotation /// 0007566 // embryo implantation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0043583 // ear development // inferred from electronic annotation /// 0043583 // ear development // not recorded /// 0043588 // skin development // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060444 // branching involved in mammary gland duct morphogenesis // not recorded /// 0060749 // mammary gland alveolus development // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1370217_at L26525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L26525.1 /DB_XREF=gi:432480 /GEN=Ptk-3 /FEA=FLmRNA /CNT=17 /TID=Rn.7807.1 /TIER=ConsEnd /STK=0 /UG=Rn.7807 /LL=25678 /DEF=Rattus norvegicus tyrosine kinase receptor (Ptk-3) gene, complete cds. /PROD=tyrosine kinase receptor /FL=gb:NM_013137.1 L26525 discoidin domain receptor tyrosine kinase 1 Ddr1 25678 NM_001166022 /// NM_013137 0001558 // regulation of cell growth // inferred from electronic annotation /// 0001558 // regulation of cell growth // not recorded /// 0001952 // regulation of cell-matrix adhesion // inferred from electronic annotation /// 0001952 // regulation of cell-matrix adhesion // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007566 // embryo implantation // inferred from electronic annotation /// 0007566 // embryo implantation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0043583 // ear development // inferred from electronic annotation /// 0043583 // ear development // not recorded /// 0043588 // skin development // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060444 // branching involved in mammary gland duct morphogenesis // not recorded /// 0060749 // mammary gland alveolus development // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1370218_at AA848319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848319 /DB_XREF=gi:2935859 /DB_XREF=EST191079 /CLONE=RHEAL40 /FEA=FLmRNA /CNT=89 /TID=Rn.1785.1 /TIER=Stack /STK=11 /UG=Rn.1785 /LL=24534 /UG_GENE=Ldhb /UG_TITLE=Lactate dehydrogenease B /FL=gb:U07181.1 gb:NM_012595.1 AA848319 lactate dehydrogenase B Ldhb 24534 NM_012595 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006089 // lactate metabolic process // inferred from direct assay /// 0006096 // glycolysis // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0019674 // NAD metabolic process // inferred from direct assay /// 0044262 // cellular carbohydrate metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004457 // lactate dehydrogenase activity // inferred from direct assay /// 0004459 // L-lactate dehydrogenase activity // inferred from direct assay /// 0004459 // L-lactate dehydrogenase activity // not recorded /// 0004459 // L-lactate dehydrogenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay /// 0051287 // NAD or NADH binding // inferred from direct assay 1370219_at AI232788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232788 /DB_XREF=gi:3816668 /DB_XREF=EST229476 /CLONE=RKICG56 /FEA=FLmRNA /CNT=30 /TID=Rn.5856.1 /TIER=Stack /STK=11 /UG=Rn.5856 /LL=79129 /UG_GENE=Cyba /UG_TITLE=cytochrome b558 alpha-subunit /FL=gb:NM_024160.1 gb:U18729.1 AI232788 cytochrome b-245, alpha polypeptide Cyba 79129 NM_024160 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0003106 // regulation of glomerular filtration by angiotensin // inferred from mutant phenotype /// 0006800 // oxygen and reactive oxygen species metabolic process // traceable author statement /// 0006801 // superoxide metabolic process // inferred from direct assay /// 0006801 // superoxide metabolic process // inferred from mutant phenotype /// 0006801 // superoxide metabolic process // not recorded /// 0006801 // superoxide metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0008217 // regulation of blood pressure // inferred from mutant phenotype /// 0014895 // smooth muscle hypertrophy // inferred from mutant phenotype /// 0017004 // cytochrome complex assembly // inferred from electronic annotation /// 0017004 // cytochrome complex assembly // not recorded /// 0022900 // electron transport chain // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0042554 // superoxide anion generation // inferred from mutant phenotype /// 0042554 // superoxide anion generation // not recorded /// 0042554 // superoxide anion generation // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation /// 0045087 // innate immune response // not recorded /// 0045730 // respiratory burst // inferred from electronic annotation /// 0045730 // respiratory burst // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0050665 // hydrogen peroxide biosynthetic process // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from mutant phenotype /// 0055114 // oxidation reduction // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0070555 // response to interleukin-1 // inferred from expression pattern /// 0071230 // cellular response to amino acid stimulus // inferred from expression pattern /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern /// 0071310 // cellular response to organic substance // inferred from direct assay /// 0071333 // cellular response to glucose stimulus // inferred from expression pattern /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern /// 0071407 // cellular response to organic cyclic substance // inferred from expression pattern /// 0071480 // cellular response to gamma radiation // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043020 // NADPH oxidase complex // inferred from direct assay /// 0043020 // NADPH oxidase complex // inferred from mutant phenotype /// 0043020 // NADPH oxidase complex // not recorded /// 0043020 // NADPH oxidase complex // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0009055 // electron carrier activity // not recorded /// 0016175 // superoxide-generating NADPH oxidase activity // inferred from mutant phenotype /// 0016175 // superoxide-generating NADPH oxidase activity // not recorded /// 0016175 // superoxide-generating NADPH oxidase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1370220_at BI283159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283159 /DB_XREF=gi:14934628 /DB_XREF=UI-R-CU0s-cca-g-06-0-UI.s1 /CLONE=UI-R-CU0s-cca-g-06-0-UI /FEA=FLmRNA /CNT=24 /TID=Rn.2108.1 /TIER=Stack /STK=11 /UG=Rn.2108 /UG_TITLE=Rattus norvegicus retinoid-inducible serine carboxypeptidase precursor (Risc) mRNA, complete cds /FL=gb:NM_133383.1 gb:AF330051.1 BI283159 serine carboxypeptidase 1 Scpep1 114861 NM_133383 0006508 // proteolysis // inferred from electronic annotation /// 0042573 // retinoic acid metabolic process // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004185 // serine-type carboxypeptidase activity // inferred from electronic annotation /// 0004185 // serine-type carboxypeptidase activity // traceable author statement /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1370221_at BF419320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419320 /DB_XREF=gi:11407309 /DB_XREF=UI-R-BJ2-bqq-c-02-0-UI.s1 /CLONE=UI-R-BJ2-bqq-c-02-0-UI /FEA=FLmRNA /CNT=14 /TID=Rn.63486.1 /TIER=Stack /STK=11 /UG=Rn.63486 /LL=65154 /UG_GENE=Wisp1 /UG_TITLE=WNT1 inducible signaling pathway protein 1 /FL=gb:NM_031716.1 gb:AF228049.1 BF419320 WNT1 inducible signaling pathway protein 1 Wisp1 65154 NM_031716 0001558 // regulation of cell growth // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation 1370222_at AI145840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145840 /DB_XREF=gi:3667639 /DB_XREF=UI-R-BT0-pz-c-05-0-UI.s1 /CLONE=UI-R-BT0-pz-c-05-0-UI /FEA=FLmRNA /CNT=14 /TID=Rn.22092.1 /TIER=Stack /STK=11 /UG=Rn.22092 /LL=29609 /UG_GENE=Pitx3 /UG_TITLE=paired-like homeodomain transcription factor 3 /FL=gb:NM_019247.1 AI145840 paired-like homeodomain 3 Pitx3 29609 NM_019247 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0030901 // midbrain development // inferred from electronic annotation /// 0030901 // midbrain development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048666 // neuron development // inferred from electronic annotation /// 0048666 // neuron development // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1370223_at AI170798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170798 /DB_XREF=gi:3710838 /DB_XREF=EST216737 /CLONE=RMUBB63 /FEA=FLmRNA /CNT=20 /TID=Rn.10973.1 /TIER=Stack /STK=10 /UG=Rn.10973 /LL=117051 /UG_GENE=Arfrp1 /UG_TITLE=ADP-ribosylation factor related protein 1 /FL=gb:NM_053980.1 AI170798 ADP-ribosylation factor related protein 1 Arfrp1 117051 NM_053980 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007369 // gastrulation // inferred from electronic annotation /// 0007369 // gastrulation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1370224_at BE113920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113920 /DB_XREF=gi:8506025 /DB_XREF=UI-R-BJ1-awi-a-05-0-UI.s1 /CLONE=UI-R-BJ1-awi-a-05-0-UI /FEA=FLmRNA /CNT=19 /TID=Rn.10247.1 /TIER=Stack /STK=10 /UG=Rn.10247 /LL=25125 /UG_GENE=Stat3 /UG_TITLE=Signal transducer and activator of transcription 3 /FL=gb:NM_012747.1 BE113920 signal transducer and activator of transcription 3 Stat3 25125 NM_012747 0001659 // temperature homeostasis // not recorded /// 0001659 // temperature homeostasis // inferred from sequence or structural similarity /// 0001659 // temperature homeostasis // inferred from electronic annotation /// 0001754 // eye photoreceptor cell differentiation // not recorded /// 0001754 // eye photoreceptor cell differentiation // inferred from sequence or structural similarity /// 0001754 // eye photoreceptor cell differentiation // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006953 // acute-phase response // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0007259 // JAK-STAT cascade // traceable author statement /// 0010033 // response to organic substance // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019953 // sexual reproduction // not recorded /// 0019953 // sexual reproduction // inferred from sequence or structural similarity /// 0019953 // sexual reproduction // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032355 // response to estradiol stimulus // not recorded /// 0032355 // response to estradiol stimulus // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // not recorded /// 0034097 // response to cytokine stimulus // inferred from direct assay /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042593 // glucose homeostasis // not recorded /// 0042593 // glucose homeostasis // inferred from sequence or structural similarity /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042755 // eating behavior // not recorded /// 0042755 // eating behavior // inferred from sequence or structural similarity /// 0042755 // eating behavior // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from expression pattern /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060397 // JAK-STAT cascade involved in growth hormone signaling pathway // not recorded /// 0060397 // JAK-STAT cascade involved in growth hormone signaling pathway // inferred from sequence or structural similarity /// 0060397 // JAK-STAT cascade involved in growth hormone signaling pathway // inferred from electronic annotation /// 0070102 // interleukin-6-mediated signaling pathway // inferred from electronic annotation /// 0070102 // interleukin-6-mediated signaling pathway // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // not recorded /// 0046983 // protein dimerization activity // inferred from sequence or structural similarity /// 0046983 // protein dimerization activity // inferred from electronic annotation 1370225_at AI556378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556378 /DB_XREF=gi:4488741 /DB_XREF=UI-R-C2p-rg-g-11-0-UI.s1 /CLONE=UI-R-C2p-rg-g-11-0-UI /FEA=FLmRNA /CNT=14 /TID=Rn.40380.1 /TIER=Stack /STK=10 /UG=Rn.40380 /LL=114491 /UG_GENE=Cited4 /UG_TITLE=Cbpp300-interacting transactivator, with GluAsp-rich carboxy-terminal domain, 4 /FL=gb:AF361477.1 gb:NM_053699.1 AI556378 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4 Cited4 114491 NM_053699 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003713 // transcription coactivator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1370226_at AI409867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409867 /DB_XREF=gi:4253371 /DB_XREF=EST238160 /CLONE=RPLDM26 /FEA=FLmRNA /CNT=96 /TID=Rn.1233.1 /TIER=Stack /STK=9 /UG=Rn.1233 /LL=25308 /UG_GENE=Cstb /UG_TITLE=Cystatin beta /FL=gb:NM_012838.1 AI409867 cystatin B (stefin B) Cstb 25308 NM_012838 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0010466 // negative regulation of peptidase activity // not recorded /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0042981 // regulation of apoptosis // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0002020 // protease binding // inferred from electronic annotation /// 0002020 // protease binding // not recorded /// 0004866 // endopeptidase inhibitor activity // inferred from electronic annotation /// 0004869 // cysteine-type endopeptidase inhibitor activity // not recorded /// 0004869 // cysteine-type endopeptidase inhibitor activity // traceable author statement /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1370227_at AI013851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013851 /DB_XREF=gi:3227907 /DB_XREF=EST208526 /CLONE=RSPBV63 /FEA=FLmRNA /CNT=74 /TID=Rn.1928.1 /TIER=Stack /STK=9 /UG=Rn.1928 /LL=64368 /UG_GENE=Prlpd /UG_TITLE=prolactin-like protein D /FL=gb:NM_022537.1 gb:AB000107.1 AI013851 prolactin family 8, subfamily a, member 7 Prl8a7 64368 NM_022537 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation 1370228_at AA945178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945178 /DB_XREF=gi:3105094 /DB_XREF=EST200677 /CLONE=RLIAH54 /FEA=FLmRNA /CNT=36 /TID=Rn.2514.1 /TIER=Stack /STK=9 /UG=Rn.2514 /LL=24825 /UG_GENE=Tf /UG_TITLE=Transferrin /FL=gb:D38380.1 gb:NM_017055.1 AA945178 transferrin Tf 24825 NM_001013110 0001666 // response to hypoxia // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006826 // iron ion transport // inferred from electronic annotation /// 0006826 // iron ion transport // not recorded /// 0006826 // iron ion transport // traceable author statement /// 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0006953 // acute-phase response // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0015682 // ferric iron transport // inferred from direct assay /// 0031643 // positive regulation of myelination // inferred from direct assay /// 0060395 // SMAD protein signal transduction // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005604 // basement membrane // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005770 // late endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0005905 // coated pit // not recorded /// 0009925 // basal plasma membrane // inferred from electronic annotation /// 0009925 // basal plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0030139 // endocytic vesicle // not recorded /// 0030141 // stored secretory granule // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0045178 // basal part of cell // not recorded /// 0045178 // basal part of cell // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0055037 // recycling endosome // inferred from electronic annotation /// 0055037 // recycling endosome // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0008199 // ferric iron binding // inferred from direct assay /// 0008199 // ferric iron binding // inferred from electronic annotation /// 0015091 // ferric iron transmembrane transporter activity // inferred from direct assay /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1370229_at BG666709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666709 /DB_XREF=gi:13888631 /DB_XREF=DRABTD02 /CLONE=DRABTD02 /FEA=FLmRNA /CNT=66 /TID=Rn.81250.1 /TIER=Stack /STK=8 /UG=Rn.81250 /LL=64457 /UG_GENE=AF045564 /UG_TITLE=development-related protein /FL=gb:NM_031967.1 gb:AF045564.1 BG666709 N-myc downstream regulated gene 4 Ndrg4 64457 NM_031967 0007275 // multicellular organismal development // inferred from electronic annotation 1370230_at BG666602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666602 /DB_XREF=gi:13888524 /DB_XREF=DRABPD10 /CLONE=DRABPD10 /FEA=FLmRNA /CNT=43 /TID=Rn.5790.1 /TIER=Stack /STK=8 /UG=Rn.5790 /LL=94271 /UG_GENE=Atp5j /UG_TITLE=ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6 /FL=gb:M73030.1 gb:NM_053602.1 BG666602 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6 Atp5j 94271 NM_053602 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0046034 // ATP metabolic process // inferred from direct assay 0000276 // mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) // inferred from direct assay /// 0000276 // mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005753 // mitochondrial proton-transporting ATP synthase complex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded 1370231_at AI234022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234022 /DB_XREF=gi:3817902 /DB_XREF=EST230710 /CLONE=RLUCU21 /FEA=FLmRNA /CNT=28 /TID=Rn.11288.1 /TIER=Stack /STK=8 /UG=Rn.11288 /LL=171063 /UG_GENE=Gtf3c1 /UG_TITLE=general transcription factor III C 1 /FL=gb:NM_133541.1 gb:L28801.1 AI234022 general transcription factor IIIC, polypeptide 1, alpha Gtf3c1 171063 NM_133541 0006350 // transcription // inferred from electronic annotation 0000127 // transcription factor TFIIIC complex // inferred from direct assay /// 0000127 // transcription factor TFIIIC complex // not recorded /// 0000127 // transcription factor TFIIIC complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003709 // RNA polymerase III transcription factor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370232_at AI102838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102838 /DB_XREF=gi:3704763 /DB_XREF=EST212127 /CLONE=REMBT53 /FEA=FLmRNA /CNT=34 /TID=Rn.147.1 /TIER=Stack /STK=8 /UG=Rn.147 /LL=24513 /UG_GENE=Ivd /UG_TITLE=Isovaleryl Coenzyme A dehydrogenase /FL=gb:NM_012592.1 gb:J05031.1 AI102838 isovaleryl coenzyme A dehydrogenase Ivd 24513 NM_012592 0006551 // leucine metabolic process // traceable author statement /// 0006552 // leucine catabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0033539 // fatty acid beta-oxidation using acyl-CoA dehydrogenase // inferred by curator /// 0051260 // protein homooligomerization // traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from direct assay 0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0008470 // isovaleryl-CoA dehydrogenase activity // inferred from direct assay /// 0008470 // isovaleryl-CoA dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1370233_at AW252096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252096 /DB_XREF=gi:6595687 /DB_XREF=UI-R-BJ0-aee-b-06-0-UI.s1 /CLONE=UI-R-BJ0-aee-b-06-0-UI /FEA=FLmRNA /CNT=12 /TID=Rn.45965.1 /TIER=Stack /STK=8 /UG=Rn.45965 /LL=170630 /UG_GENE=Fgf12 /UG_TITLE=fibroblast growth factor 12 /FL=gb:AB079374.1 gb:NM_130814.1 gb:AF348446.1 AW252096 fibroblast growth factor 12 Fgf12 170630 NM_130814 0007254 // JNK cascade // inferred from electronic annotation /// 0007254 // JNK cascade // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005104 // fibroblast growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded 1370234_at AA893484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893484 /DB_XREF=gi:3020363 /DB_XREF=EST197287 /CLONE=RLIAD05 /FEA=FLmRNA /CNT=91 /TID=Rn.1604.1 /TIER=Stack /STK=7 /UG=Rn.1604 /LL=25661 /UG_GENE=Fn1 /UG_TITLE=Fibronectin 1 /FL=gb:NM_019143.1 AA893484 fibronectin 1 Fn1 25661 NM_019143 0001503 // ossification // traceable author statement /// 0001525 // angiogenesis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0006953 // acute-phase response // inferred from electronic annotation /// 0007044 // cell-substrate junction assembly // inferred from electronic annotation /// 0007044 // cell-substrate junction assembly // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0007160 // cell-matrix adhesion // inferred from mutant phenotype /// 0007160 // cell-matrix adhesion // not recorded /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0010952 // positive regulation of peptidase activity // not recorded /// 0018149 // peptide cross-linking // not recorded /// 0030198 // extracellular matrix organization // inferred from mutant phenotype /// 0034446 // substrate adhesion-dependent cell spreading // not recorded /// 0042060 // wound healing // inferred from electronic annotation /// 0042060 // wound healing // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005577 // fibrinogen complex // not recorded /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005578 // proteinaceous extracellular matrix // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from direct assay /// 0005604 // basement membrane // not recorded /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // not recorded 0002020 // protease binding // inferred from physical interaction /// 0005201 // extracellular matrix structural constituent // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008201 // heparin binding // inferred from electronic annotation /// 0016504 // peptidase activator activity // inferred from electronic annotation /// 0016504 // peptidase activator activity // not recorded /// 0045340 // mercury ion binding // inferred from direct assay 1370235_at AI175009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175009 /DB_XREF=gi:3725647 /DB_XREF=EST218524 /CLONE=RMUCA81 /FEA=FLmRNA /CNT=46 /TID=Rn.3285.1 /TIER=Stack /STK=7 /UG=Rn.3285 /LL=25045 /UG_GENE=Dbi /UG_TITLE=Diazepam binding inhibitor (GABA receptor modulator, acyl-Coenxyme A binding protein) /FL=gb:M20268.1 gb:NM_031853.1 AI175009 diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) Dbi 25045 NM_031853 0006637 // acyl-CoA metabolic process // traceable author statement /// 0006694 // steroid biosynthetic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0014009 // glial cell proliferation // inferred from direct assay /// 0030157 // pancreatic juice secretion // inferred from expression pattern /// 0031670 // cellular response to nutrient // inferred from expression pattern /// 0031999 // negative regulation of fatty acid beta-oxidation // inferred from direct assay /// 0046889 // positive regulation of lipid biosynthetic process // inferred from direct assay /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from mutant phenotype 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0043292 // contractile fiber // inferred from direct assay 0000062 // acyl-CoA binding // inferred from physical interaction /// 0000062 // acyl-CoA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0030156 // benzodiazepine receptor binding // inferred from direct assay 1370236_at AI234353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234353 /DB_XREF=gi:3818233 /DB_XREF=EST231041 /CLONE=RLUCZ95 /FEA=FLmRNA /CNT=40 /TID=Rn.1574.1 /TIER=Stack /STK=7 /UG=Rn.1574 /LL=29411 /UG_GENE=Ppt /UG_TITLE=palmitoyl-protein thioesterase /FL=gb:L34262.1 gb:NM_022502.1 AI234353 palmitoyl-protein thioesterase 1 Ppt1 29411 NM_022502 0002084 // protein depalmitoylation // not recorded /// 0002084 // protein depalmitoylation // inferred from sequence or structural similarity /// 0002084 // protein depalmitoylation // inferred from electronic annotation /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // not recorded /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // inferred from sequence or structural similarity /// 0006464 // protein modification process // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // not recorded /// 0006907 // pinocytosis // not recorded /// 0007040 // lysosome organization // not recorded /// 0007040 // lysosome organization // inferred from electronic annotation /// 0007042 // lysosomal lumen acidification // not recorded /// 0007042 // lysosomal lumen acidification // inferred from sequence or structural similarity /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // not recorded /// 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from sequence or structural similarity /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from sequence or structural similarity /// 0007601 // visual perception // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0007625 // grooming behavior // inferred from electronic annotation /// 0007625 // grooming behavior // not recorded /// 0008152 // metabolic process // not recorded /// 0008306 // associative learning // inferred from electronic annotation /// 0008306 // associative learning // not recorded /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0015031 // protein transport // not recorded /// 0015031 // protein transport // inferred from sequence or structural similarity /// 0016042 // lipid catabolic process // not recorded /// 0016042 // lipid catabolic process // inferred from sequence or structural similarity /// 0030308 // negative regulation of cell growth // not recorded /// 0030308 // negative regulation of cell growth // inferred from sequence or structural similarity /// 0031579 // membrane raft organization // not recorded /// 0031579 // membrane raft organization // inferred from sequence or structural similarity /// 0032429 // regulation of phospholipase A2 activity // inferred from electronic annotation /// 0032429 // regulation of phospholipase A2 activity // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from sequence or structural similarity /// 0044257 // cellular protein catabolic process // inferred from electronic annotation /// 0044257 // cellular protein catabolic process // not recorded /// 0044265 // cellular macromolecule catabolic process // not recorded /// 0044265 // cellular macromolecule catabolic process // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // traceable author statement /// 0048260 // positive regulation of receptor-mediated endocytosis // not recorded /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from sequence or structural similarity /// 0048549 // positive regulation of pinocytosis // not recorded /// 0048549 // positive regulation of pinocytosis // inferred from sequence or structural similarity /// 0051181 // cofactor transport // not recorded /// 0051181 // cofactor transport // inferred from sequence or structural similarity /// 0051186 // cofactor metabolic process // not recorded /// 0051186 // cofactor metabolic process // inferred from sequence or structural similarity 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from sequence or structural similarity /// 0005764 // lysosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0008021 // synaptic vesicle // inferred from direct assay /// 0008021 // synaptic vesicle // not recorded /// 0008021 // synaptic vesicle // inferred from sequence or structural similarity /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from sequence or structural similarity /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043025 // neuronal cell body // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from sequence or structural similarity /// 0045202 // synapse // inferred from direct assay 0008474 // palmitoyl-(protein) hydrolase activity // inferred from electronic annotation /// 0008474 // palmitoyl-(protein) hydrolase activity // not recorded /// 0008474 // palmitoyl-(protein) hydrolase activity // inferred from sequence or structural similarity /// 0016290 // palmitoyl-CoA hydrolase activity // not recorded /// 0016290 // palmitoyl-CoA hydrolase activity // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation 1370237_at AA799574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799574 /DB_XREF=gi:2862529 /DB_XREF=EST189071 /CLONE=RHEAC70 /FEA=FLmRNA /CNT=31 /TID=Rn.17172.1 /TIER=Stack /STK=7 /UG=Rn.17172 /LL=113965 /UG_GENE=Hadhsc /UG_TITLE=hydroxylacyl-Coenzyme A dehydrogenase, short chain /FL=gb:NM_057186.1 gb:AF095449.1 AA799574 hydroxyacyl-Coenzyme A dehydrogenase Hadh 113965 NM_057186 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from mutant phenotype /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0014823 // response to activity // inferred from direct assay /// 0032868 // response to insulin stimulus // inferred from direct assay /// 0042493 // response to drug // inferred from direct assay /// 0046676 // negative regulation of insulin secretion // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // inferred from mutant phenotype /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // not recorded /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation /// 0070403 // NAD binding // inferred from electronic annotation 1370238_at AA891707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891707 /DB_XREF=gi:3018586 /DB_XREF=EST195510 /CLONE=RKIAF79 /FEA=FLmRNA /CNT=21 /TID=Rn.4281.1 /TIER=Stack /STK=7 /UG=Rn.4281 /LL=171069 /UG_GENE=LOC171069 /UG_TITLE=dapit /FL=gb:NM_133544.1 AA891707 up-regulated during skeletal muscle growth 5 homolog (mouse) Usmg5 171069 NM_133544 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 1370239_at AI179404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179404 /DB_XREF=gi:3730042 /DB_XREF=EST223108 /CLONE=RSPCG80 /FEA=FLmRNA /CNT=653 /TID=Rn.11229.1 /TIER=Stack /STK=6 /UG=Rn.11229 /LL=25632 /UG_GENE=Hba1 /UG_TITLE=Hemoglobin, alpha 1 /FL=gb:NM_013096.1 gb:M17083.1 AI179404 hemoglobin alpha, adult chain 2 /// hemoglobin alpha 2 chain Hba-a2 /// LOC360504 25632 /// 360504 NM_001007722 /// NM_013096 0001701 // in utero embryonic development // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0015671 // oxygen transport // inferred from electronic annotation /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0048821 // erythrocyte development // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051930 // regulation of sensory perception of pain // inferred from mutant phenotype 0005625 // soluble fraction // inferred from direct assay /// 0005833 // hemoglobin complex // inferred from direct assay /// 0005833 // hemoglobin complex // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // not recorded 0001540 // beta-amyloid binding // inferred from direct assay /// 0005344 // oxygen transporter activity // inferred by curator /// 0005344 // oxygen transporter activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0019825 // oxygen binding // inferred from direct assay /// 0019825 // oxygen binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from direct assay /// 0020037 // heme binding // inferred from electronic annotation /// 0043177 // organic acid binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1370240_x_at AI179404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179404 /DB_XREF=gi:3730042 /DB_XREF=EST223108 /CLONE=RSPCG80 /FEA=FLmRNA /CNT=653 /TID=Rn.11229.1 /TIER=Stack /STK=6 /UG=Rn.11229 /LL=25632 /UG_GENE=Hba1 /UG_TITLE=Hemoglobin, alpha 1 /FL=gb:NM_013096.1 gb:M17083.1 AI179404 hemoglobin alpha, adult chain 2 /// hemoglobin alpha 2 chain Hba-a2 /// LOC360504 25632 /// 360504 NM_001007722 /// NM_013096 0001701 // in utero embryonic development // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0015671 // oxygen transport // inferred from electronic annotation /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0048821 // erythrocyte development // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051930 // regulation of sensory perception of pain // inferred from mutant phenotype 0005625 // soluble fraction // inferred from direct assay /// 0005833 // hemoglobin complex // inferred from direct assay /// 0005833 // hemoglobin complex // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // not recorded 0001540 // beta-amyloid binding // inferred from direct assay /// 0005344 // oxygen transporter activity // inferred by curator /// 0005344 // oxygen transporter activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0019825 // oxygen binding // inferred from direct assay /// 0019825 // oxygen binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from direct assay /// 0020037 // heme binding // inferred from electronic annotation /// 0043177 // organic acid binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1370241_at AA800502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800502 /DB_XREF=gi:2863457 /DB_XREF=EST189999 /CLONE=RLIAA95 /FEA=FLmRNA /CNT=92 /TID=Rn.1247.1 /TIER=Stack /STK=6 /UG=Rn.1247 /LL=29298 /UG_GENE=Cyp2c39 /UG_TITLE=cytochrome P450, 2c39 /FL=gb:NM_017158.1 gb:M18335.1 AA800502 cytochrome P450, family 2, subfamily c, polypeptide 7 /// cytochrome P450 2C7-like Cyp2c7 /// LOC100361347 100361347 /// 29298 NM_017158 /// XM_002728882 0007584 // response to nutrient // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1370242_at AA848284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848284 /DB_XREF=gi:2935824 /DB_XREF=EST191044 /CLONE=RHEAC82 /FEA=FLmRNA /CNT=70 /TID=Rn.2139.1 /TIER=Stack /STK=6 /UG=Rn.2139 /LL=124323 /UG_GENE=Rps23 /UG_TITLE=ribosomal protein S23 /FL=gb:NM_078617.1 AA848284 ribosomal protein S23 Rps23 124323 NM_078617 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // non-traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0045182 // translation regulator activity // non-traceable author statement 1370243_a_at AI178772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178772 /DB_XREF=gi:3729410 /DB_XREF=EST222454 /CLONE=RSPBK87 /FEA=FLmRNA /CNT=87 /TID=Rn.817.1 /TIER=Stack /STK=6 /UG=Rn.817 /LL=29222 /UG_GENE=Ptma /UG_TITLE=prothymosin alpha /FL=gb:M86564.1 gb:NM_021740.1 AI178772 prothymosin alpha Ptma 29222 NM_021740 0006916 // anti-apoptosis // inferred from direct assay /// 0008283 // cell proliferation // traceable author statement /// 0030154 // cell differentiation // traceable author statement /// 0043154 // negative regulation of caspase activity // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation 1370244_at AI176595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176595 /DB_XREF=gi:3727233 /DB_XREF=EST220183 /CLONE=ROVBU30 /FEA=FLmRNA /CNT=90 /TID=Rn.1294.1 /TIER=Stack /STK=6 /UG=Rn.1294 /LL=25697 /UG_GENE=Ctsl /UG_TITLE=Cathepsin L /FL=gb:NM_013156.1 AI176595 cathepsin L1 Ctsl1 25697 NM_013156 0006508 // proteolysis // inferred from expression pattern /// 0006508 // proteolysis // inferred from electronic annotation /// 0007154 // cell communication // inferred from direct assay /// 0007283 // spermatogenesis // inferred from expression pattern /// 0008584 // male gonad development // inferred from expression pattern /// 0009267 // cellular response to starvation // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010259 // multicellular organismal aging // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0021675 // nerve development // inferred from expression pattern /// 0034698 // response to gonadotropin stimulus // inferred from expression pattern /// 0046697 // decidualization // inferred from expression pattern /// 0048102 // autophagic cell death // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0060008 // Sertoli cell differentiation // inferred from expression pattern /// 0060441 // epithelial tube branching involved in lung morphogenesis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation /// 0005773 // vacuole // inferred from direct assay /// 0005902 // microvillus // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0045177 // apical part of cell // inferred from direct assay 0004177 // aminopeptidase activity // inferred from direct assay /// 0004197 // cysteine-type endopeptidase activity // inferred from direct assay /// 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030984 // kininogen binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction /// 0042277 // peptide binding // inferred from direct assay 1370245_at AI232474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232474 /DB_XREF=gi:3816354 /DB_XREF=EST229162 /CLONE=RKICC11 /FEA=FLmRNA /CNT=90 /TID=Rn.1294.1 /TIER=ConsEnd /STK=2 /UG=Rn.1294 /LL=25697 /UG_GENE=Ctsl /UG_TITLE=Cathepsin L /FL=gb:NM_013156.1 AI232474 1370246_at AA943837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943837 /DB_XREF=gi:3103753 /DB_XREF=EST199336 /CLONE=RBRAQ31 /FEA=FLmRNA /CNT=75 /TID=Rn.5968.1 /TIER=Stack /STK=6 /UG=Rn.5968 /LL=50663 /UG_GENE=Calm2 /UG_TITLE=calmodulin /FL=gb:NM_017326.1 gb:M17069.1 gb:M19312.1 AA943837 calmodulin 2 Calm2 50663 NM_017326 0006936 // muscle contraction // not recorded /// 0007049 // cell cycle // not recorded /// 0032465 // regulation of cytokinesis // inferred from electronic annotation /// 0032465 // regulation of cytokinesis // not recorded /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded 0000922 // spindle pole // inferred from electronic annotation /// 0000922 // spindle pole // not recorded /// 0005576 // extracellular region // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded 0005246 // calcium channel regulator activity // non-traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0031432 // titin binding // inferred from electronic annotation /// 0031432 // titin binding // not recorded /// 0031996 // thioesterase binding // not recorded /// 0031997 // N-terminal myristoylation domain binding // inferred from electronic annotation /// 0031997 // N-terminal myristoylation domain binding // not recorded /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction /// 0048306 // calcium-dependent protein binding // inferred from physical interaction 1370247_a_at AA943163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943163 /DB_XREF=gi:3103079 /DB_XREF=EST198662 /CLONE=RBRAF92 /FEA=FLmRNA /CNT=56 /TID=Rn.1476.1 /TIER=Stack /STK=6 /UG=Rn.1476 /LL=24660 /UG_GENE=Pmp22 /UG_TITLE=Peripheral myelin protein /FL=gb:NM_017037.1 AA943163 peripheral myelin protein 22 Pmp22 24660 NM_017037 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0030154 // cell differentiation // inferred from direct assay /// 0032288 // myelin assembly // inferred from electronic annotation /// 0032288 // myelin assembly // not recorded /// 0042552 // myelination // inferred from direct assay /// 0042552 // myelination // inferred from mutant phenotype 0005923 // tight junction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043218 // compact myelin // inferred from mutant phenotype 1370248_at AA851939 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851939 /DB_XREF=gi:2939479 /DB_XREF=EST194708 /CLONE=RSPAO60 /FEA=FLmRNA /CNT=57 /TID=Rn.839.1 /TIER=Stack /STK=6 /UG=Rn.839 /LL=63847 /UG_GENE=Fxyd6 /UG_TITLE=FXYD domain-containing ion transport regulator 6 /FL=gb:NM_022005.1 gb:AB030908.1 gb:AF142439.1 AA851939 FXYD domain-containing ion transport regulator 6 Fxyd6 63847 NM_022005 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation 1370249_at AI008680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008680 /DB_XREF=gi:3222512 /DB_XREF=EST203131 /CLONE=REMBB57 /FEA=FLmRNA /CNT=43 /TID=Rn.1820.1 /TIER=Stack /STK=6 /UG=Rn.1820 /LL=24230 /UG_GENE=Bzrp /UG_TITLE=Benzodiazepin receptor (peripheral) /FL=gb:J05122.1 gb:NM_012515.1 AI008680 translocator protein Tspo 24230 NM_012515 0006694 // steroid biosynthetic process // inferred from mutant phenotype /// 0006811 // ion transport // inferred from direct assay /// 0006821 // chloride transport // inferred from direct assay /// 0006950 // response to stress // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008347 // glial cell migration // inferred from direct assay /// 0010042 // response to manganese ion // inferred from expression pattern /// 0010266 // response to vitamin B1 // inferred from expression pattern /// 0010670 // positive regulation of oxygen and reactive oxygen species metabolic process // inferred from direct assay /// 0010940 // positive regulation of necrotic cell death // inferred from mutant phenotype /// 0014012 // peripheral nervous system axon regeneration // inferred from expression pattern /// 0030325 // adrenal gland development // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0032720 // negative regulation of tumor necrosis factor production // inferred from direct assay /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0045019 // negative regulation of nitric oxide biosynthetic process // inferred from direct assay /// 0048265 // response to pain // inferred from expression pattern /// 0048266 // behavioral response to pain // inferred from mutant phenotype /// 0048678 // response to axon injury // inferred from expression pattern /// 0050810 // regulation of steroid biosynthetic process // inferred from mutant phenotype /// 0051901 // positive regulation of mitochondrial depolarization // inferred from direct assay /// 0051928 // positive regulation of calcium ion transport // inferred from mutant phenotype /// 0060242 // contact inhibition // inferred from direct assay /// 0060252 // positive regulation of glial cell proliferation // inferred from direct assay /// 0060253 // negative regulation of glial cell proliferation // inferred from direct assay /// 0071222 // cellular response to lipopolysaccharide // inferred from expression pattern /// 0071294 // cellular response to zinc ion // inferred from expression pattern /// 0071476 // cellular hypotonic response // inferred from expression pattern 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005497 // androgen binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008503 // benzodiazepine receptor activity // inferred from direct assay 1370250_at AA799453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799453 /DB_XREF=gi:2862408 /DB_XREF=EST188950 /CLONE=RHEAB23 /FEA=FLmRNA /CNT=48 /TID=Rn.2274.1 /TIER=Stack /STK=6 /UG=Rn.2274 /LL=25573 /UG_GENE=Ube2i /UG_TITLE=Ubiquitin conjugating enzyme E2I /FL=gb:NM_013050.1 gb:U54632.1 AA799453 ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) Ube2i 25573 NM_013050 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0010469 // regulation of receptor activity // inferred from direct assay /// 0016925 // protein sumoylation // inferred from direct assay /// 0033145 // positive regulation of steroid hormone receptor signaling pathway // inferred from direct assay /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0051091 // positive regulation of transcription factor activity // inferred from direct assay /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0001650 // fibrillar center // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016604 // nuclear body // inferred from direct assay /// 0016605 // PML body // not recorded /// 0030425 // dendrite // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation /// 0019789 // SUMO ligase activity // inferred from direct assay /// 0019899 // enzyme binding // not recorded /// 0043398 // HLH domain binding // inferred from electronic annotation /// 0043398 // HLH domain binding // not recorded /// 0043425 // bHLH transcription factor binding // inferred from physical interaction 1370251_at AI010260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010260 /DB_XREF=gi:4133211 /DB_XREF=EST204711 /CLONE=RLUBW04 /FEA=FLmRNA /CNT=40 /TID=Rn.13633.1 /TIER=Stack /STK=6 /UG=Rn.13633 /UG_TITLE=Rattus norvegicus mRNA for Esau protein (esu gene) /FL=gb:NM_134373.1 AI010260 arginine vasopressin-induced 1 Avpi1 171386 NM_134373 0000187 // activation of MAPK activity // not recorded /// 0007049 // cell cycle // inferred from electronic annotation 1370252_at BI282724 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282724 /DB_XREF=gi:14933776 /DB_XREF=UI-R-CW0s-cce-d-11-0-UI.s1 /CLONE=UI-R-CW0s-cce-d-11-0-UI /FEA=FLmRNA /CNT=40 /TID=Rn.13633.1 /TIER=ConsEnd /STK=4 /UG=Rn.13633 /UG_TITLE=Rattus norvegicus mRNA for Esau protein (esu gene) /FL=gb:NM_134373.1 BI282724 arginine vasopressin-induced 1 /// similar to arginine vasopressin-induced 1 Avpi1 /// LOC689723 171386 /// 689723 NM_134373 /// XM_001071784 0000187 // activation of MAPK activity // not recorded /// 0007049 // cell cycle // inferred from electronic annotation 1370253_at AI228150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228150 /DB_XREF=gi:3812037 /DB_XREF=EST224845 /CLONE=RBRCR06 /FEA=FLmRNA /CNT=29 /TID=Rn.4206.1 /TIER=Stack /STK=6 /UG=Rn.4206 /LL=81768 /UG_GENE=Rpl22 /UG_TITLE=ribosomal protein L22 /FL=gb:NM_031104.1 AI228150 ribosomal protein L22 Rpl22 81768 NM_031104 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0046632 // alpha-beta T cell differentiation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded 1370254_at AI172153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172153 /DB_XREF=gi:3712193 /DB_XREF=EST218148 /CLONE=RMUBV61 /FEA=FLmRNA /CNT=26 /TID=Rn.1838.1 /TIER=Stack /STK=6 /UG=Rn.1838 /LL=94272 /UG_GENE=Clic5 /UG_TITLE=chloride intracellular channel 5 /FL=gb:AF323174.1 gb:NM_053603.1 AI172153 chloride intracellular channel 5 Clic5 94272 NM_053603 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // not recorded /// 0006821 // chloride transport // inferred from electronic annotation /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0060088 // auditory receptor cell stereocilium organization // inferred from electronic annotation /// 0060088 // auditory receptor cell stereocilium organization // not recorded 0005626 // insoluble fraction // not recorded /// 0005626 // insoluble fraction // inferred from sequence or structural similarity /// 0005626 // insoluble fraction // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0015629 // actin cytoskeleton // inferred from sequence or structural similarity /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032420 // stereocilium // inferred from electronic annotation /// 0032420 // stereocilium // not recorded /// 0032421 // stereocilium bundle // inferred from direct assay /// 0034707 // chloride channel complex // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005247 // voltage-gated chloride channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from direct assay /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370255_at AI009659 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009659 /DB_XREF=gi:3223491 /DB_XREF=EST204110 /CLONE=RLUBG89 /FEA=FLmRNA /CNT=22 /TID=Rn.3926.1 /TIER=Stack /STK=6 /UG=Rn.3926 /LL=50683 /UG_GENE=Sftpc /UG_TITLE=Surfactant, pulmonary-associated protein C /FL=gb:NM_017342.1 AI009659 surfactant protein C Sftpc 50683 NM_017342 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0033189 // response to vitamin A // inferred from expression pattern /// 0050828 // regulation of liquid surface tension // traceable author statement /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern /// 0055093 // response to hyperoxia // inferred from expression pattern /// 0070741 // response to interleukin-6 // inferred from expression pattern /// 0070848 // response to growth factor stimulus // inferred from expression pattern /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern /// 0071732 // cellular response to nitric oxide // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005771 // multivesicular body // inferred from direct assay /// 0042599 // lamellar body // inferred from direct assay 0042803 // protein homodimerization activity // inferred from direct assay 1370256_at AA944349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944349 /DB_XREF=gi:3104265 /DB_XREF=EST199848 /CLONE=REMAF75 /FEA=FLmRNA /CNT=19 /TID=Rn.6575.1 /TIER=Stack /STK=6 /UG=Rn.6575 /LL=58868 /UG_GENE=Fzd1 /UG_TITLE=Drosophila polarity gene (frizzled) homologue /FL=gb:NM_021266.1 gb:L02529.1 AA944349 frizzled homolog 1 (Drosophila) Fzd1 58868 NM_021266 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from direct assay /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0035414 // negative regulation of catenin protein nuclear translocation // not recorded /// 0035425 // autocrine signaling // not recorded /// 0042493 // response to drug // not recorded /// 0045667 // regulation of osteoblast differentiation // inferred from expression pattern /// 0048286 // lung alveolus development // inferred from expression pattern /// 0051091 // positive regulation of transcription factor activity // inferred from direct assay /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // inferred from direct assay /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0071305 // cellular response to vitamin D // inferred from expression pattern /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern /// 0071375 // cellular response to peptide hormone stimulus // inferred from expression pattern /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017147 // Wnt-protein binding // inferred from electronic annotation /// 0017147 // Wnt-protein binding // not recorded /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0042813 // Wnt receptor activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1370257_at AI234860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234860 /DB_XREF=gi:3828366 /DB_XREF=EST231422 /CLONE=ROVCI73 /FEA=FLmRNA /CNT=14 /TID=Rn.4283.1 /TIER=Stack /STK=6 /UG=Rn.4283 /LL=29526 /UG_GENE=Pla2g1b /UG_TITLE=phospholipase A2, group IB, pancreas /FL=gb:D00036.1 gb:NM_031585.1 AI234860 phospholipase A2, group IB, pancreas Pla2g1b 29526 NM_031585 0006633 // fatty acid biosynthetic process // inferred from direct assay /// 0006633 // fatty acid biosynthetic process // not recorded /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // inferred from direct assay /// 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0015758 // glucose transport // inferred from sequence or structural similarity /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from sequence or structural similarity /// 0044240 // multicellular organismal lipid catabolic process // inferred from electronic annotation /// 0044240 // multicellular organismal lipid catabolic process // not recorded /// 0045740 // positive regulation of DNA replication // inferred from direct assay /// 0045740 // positive regulation of DNA replication // not recorded /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0046470 // phosphatidylcholine metabolic process // inferred from electronic annotation /// 0046470 // phosphatidylcholine metabolic process // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0030141 // stored secretory granule // inferred from direct assay 0004623 // phospholipase A2 activity // inferred from direct assay /// 0004623 // phospholipase A2 activity // not recorded /// 0004623 // phospholipase A2 activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from direct assay /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0043498 // cell surface binding // inferred from direct assay /// 0043498 // cell surface binding // not recorded /// 0043498 // cell surface binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047498 // calcium-dependent phospholipase A2 activity // inferred from direct assay /// 0047498 // calcium-dependent phospholipase A2 activity // not recorded /// 0047498 // calcium-dependent phospholipase A2 activity // inferred from electronic annotation 1370258_at BI303268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303268 /DB_XREF=gi:14979548 /DB_XREF=UI-R-DQ0-ciz-j-23-0-UI.s1 /CLONE=UI-R-DQ0-ciz-j-23-0-UI /FEA=FLmRNA /CNT=27 /TID=Rn.13196.1 /TIER=Stack /STK=6 /UG=Rn.13196 /LL=171439 /UG_GENE=Hfb2 /UG_TITLE=Hfb2 protein /FL=gb:AF031483.1 gb:NM_134402.1 BI303268 basic leucine zipper and W2 domains 2 Bzw2 171439 NM_134402 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0016070 // RNA metabolic process // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370259_a_at BE101119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101119 /DB_XREF=gi:8493027 /DB_XREF=UI-R-BJ1-auh-c-12-0-UI.s1 /CLONE=UI-R-BJ1-auh-c-12-0-UI /FEA=FLmRNA /CNT=14 /TID=Rn.48025.1 /TIER=Stack /STK=6 /UG=Rn.48025 /LL=56813 /UG_GENE=LOC56813 /UG_TITLE=parathyroid hormone receptor /FL=gb:L19475.1 gb:NM_020073.1 gb:M77184.1 BE101119 parathyroid hormone 1 receptor Pth1r 56813 NM_020073 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001503 // ossification // not recorded /// 0001503 // ossification // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // not recorded /// 0002076 // osteoblast development // inferred from electronic annotation /// 0002076 // osteoblast development // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007568 // aging // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0030282 // bone mineralization // inferred from electronic annotation /// 0030282 // bone mineralization // not recorded /// 0045453 // bone resorption // inferred from electronic annotation /// 0045453 // bone resorption // not recorded /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0031526 // brush border membrane // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004991 // parathyroid hormone receptor activity // inferred from direct assay /// 0004991 // parathyroid hormone receptor activity // not recorded /// 0004991 // parathyroid hormone receptor activity // inferred from electronic annotation 1370260_at AI407835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407835 /DB_XREF=gi:4251339 /DB_XREF=EST236125 /CLONE=ROVEC16 /FEA=FLmRNA /CNT=21 /TID=Rn.2375.1 /TIER=Stack /STK=6 /UG=Rn.2375 /LL=25230 /UG_GENE=Add3 /UG_TITLE=Adducin 3, gamma /FL=gb:U35775.1 gb:NM_031552.1 AI407835 adducin 3 (gamma) Add3 25230 NM_001164103 /// NM_031552 0042493 // response to drug // inferred from direct assay 0000794 // condensed nuclear chromosome // inferred from electronic annotation /// 0000794 // condensed nuclear chromosome // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from direct assay /// 0005856 // cytoskeleton // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005080 // protein kinase C binding // inferred from direct assay /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005198 // structural molecule activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370261_at BI285433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285433 /DB_XREF=gi:14939066 /DB_XREF=UI-R-DD0-caa-a-08-0-UI.s1 /CLONE=UI-R-DD0-caa-a-08-0-UI /FEA=FLmRNA /CNT=19 /TID=Rn.34915.1 /TIER=Stack /STK=6 /UG=Rn.34915 /LL=81771 /UG_GENE=Rps6ka1 /UG_TITLE=S6 protein kinase (Rsk-1) /FL=gb:NM_031107.1 gb:M99169.1 BI285433 ribosomal protein S6 kinase polypeptide 1 Rps6ka1 81771 NM_031107 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from direct assay 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded /// 0005819 // spindle // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004711 // ribosomal protein S6 kinase activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from direct assay /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1370262_at AI706785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI706785 /DB_XREF=gi:4994685 /DB_XREF=UI-R-AA1-aab-g-05-0-UI.s1 /CLONE=UI-R-AA1-aab-g-05-0-UI /FEA=FLmRNA /CNT=16 /TID=Rn.6864.1 /TIER=Stack /STK=6 /UG=Rn.6864 /UG_TITLE=Rattus norvegicus LYRIC (Lyric), mRNA /FL=gb:NM_133398.1 gb:AF100421.2 AI706785 metadherin Mtdh 170910 NM_133398 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0070830 // tight junction assembly // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from direct assay /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded /// 0046581 // intercellular canaliculus // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051059 // NF-kappaB binding // not recorded /// 0051059 // NF-kappaB binding // inferred from sequence or structural similarity /// 0051059 // NF-kappaB binding // inferred from electronic annotation 1370263_at BE107343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107343 /DB_XREF=gi:8499448 /DB_XREF=UI-R-BS1-ays-f-07-0-UI.s1 /CLONE=UI-R-BS1-ays-f-07-0-UI /FEA=FLmRNA /CNT=12 /TID=Rn.23105.1 /TIER=Stack /STK=6 /UG=Rn.23105 /LL=114125 /UG_GENE=Dll3 /UG_TITLE=delta (Drosophila)-like 3 /FL=gb:AF084576.1 gb:NM_053666.1 BE107343 delta-like 3 (Drosophila) Dll3 114125 NM_053666 0001501 // skeletal system development // not recorded /// 0001501 // skeletal system development // inferred from sequence or structural similarity /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001709 // cell fate determination // traceable author statement /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001756 // somitogenesis // not recorded /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007386 // compartment pattern formation // inferred from electronic annotation /// 0007386 // compartment pattern formation // not recorded /// 0007417 // central nervous system development // inferred from expression pattern /// 0009888 // tissue development // inferred from electronic annotation /// 0009888 // tissue development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045746 // negative regulation of Notch signaling pathway // inferred from direct assay /// 0048339 // paraxial mesoderm development // inferred from electronic annotation /// 0048339 // paraxial mesoderm development // not recorded /// 0048712 // negative regulation of astrocyte differentiation // inferred from direct assay /// 0050768 // negative regulation of neurogenesis // inferred from electronic annotation /// 0050768 // negative regulation of neurogenesis // not recorded /// 0050769 // positive regulation of neurogenesis // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005112 // Notch binding // inferred from physical interaction /// 0005112 // Notch binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370264_at BI288556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288556 /DB_XREF=gi:14945259 /DB_XREF=UI-R-DK0-cdg-c-07-0-UI.s1 /CLONE=UI-R-DK0-cdg-c-07-0-UI /FEA=FLmRNA /CNT=11 /TID=Rn.33511.1 /TIER=Stack /STK=6 /UG=Rn.33511 /UG_TITLE=Rattus norvegicus nesprin-1 mRNA, complete cds /FL=gb:AF452647.1 gb:NM_134381.1 BI288556 spectrin repeat containing, nuclear envelope 1 Syne1 499010 NM_001029909 0007030 // Golgi organization // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0009416 // response to light stimulus // inferred from expression pattern /// 0040023 // establishment of nucleus localization // not recorded /// 0042692 // muscle cell differentiation // not recorded /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from mutant phenotype /// 0048814 // regulation of dendrite morphogenesis // inferred from mutant phenotype /// 0090286 // cytoskeletal anchoring at nuclear membrane // not recorded /// 0090292 // nuclear matrix anchoring at nuclear membrane // not recorded 0005635 // nuclear envelope // inferred from direct assay /// 0005635 // nuclear envelope // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005819 // spindle // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0030017 // sarcomere // not recorded /// 0030496 // midbody // inferred from direct assay /// 0034993 // SUN-KASH complex // not recorded /// 0043197 // dendritic spine // inferred from direct assay /// 0045211 // postsynaptic membrane // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005198 // structural molecule activity // traceable author statement /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005521 // lamin binding // not recorded 1370265_at BF285345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285345 /DB_XREF=gi:11216415 /DB_XREF=EST449936 /CLONE=RGIFD87 /FEA=FLmRNA /CNT=14 /TID=Rn.32973.1 /TIER=ConsEnd /STK=5 /UG=Rn.32973 /LL=25388 /UG_GENE=Arrb2 /UG_TITLE=Arrestin, beta 2 /FL=gb:M91590.1 gb:NM_012911.1 BF285345 arrestin, beta 2 Arrb2 25388 NM_012911 0001932 // regulation of protein phosphorylation // not recorded /// 0002031 // G-protein coupled receptor internalization // not recorded /// 0002032 // desensitization of G-protein coupled receptor protein signaling pathway by arrestin // not recorded /// 0002032 // desensitization of G-protein coupled receptor protein signaling pathway by arrestin // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007600 // sensory perception // inferred from electronic annotation /// 0007628 // adult walking behavior // not recorded /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // not recorded /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded /// 0030817 // regulation of cAMP biosynthetic process // traceable author statement /// 0030820 // regulation of cAMP catabolic process // traceable author statement /// 0031397 // negative regulation of protein ubiquitination // not recorded /// 0031623 // receptor internalization // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0032226 // positive regulation of synaptic transmission, dopaminergic // not recorded /// 0032691 // negative regulation of interleukin-1 beta production // not recorded /// 0032695 // negative regulation of interleukin-12 production // not recorded /// 0032715 // negative regulation of interleukin-6 production // not recorded /// 0032720 // negative regulation of tumor necrosis factor production // not recorded /// 0034122 // negative regulation of toll-like receptor signaling pathway // not recorded /// 0042699 // follicle-stimulating hormone signaling pathway // inferred from direct assay /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0045953 // negative regulation of natural killer cell mediated cytotoxicity // not recorded /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded /// 0060326 // cell chemotaxis // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0031410 // cytoplasmic vesicle // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from direct assay 0001664 // G-protein-coupled receptor binding // not recorded /// 0001664 // G-protein-coupled receptor binding // traceable author statement /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030276 // clathrin binding // traceable author statement /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0031701 // angiotensin receptor binding // not recorded /// 0031762 // follicle-stimulating hormone receptor binding // inferred from physical interaction /// 0043422 // protein kinase B binding // not recorded 1370266_at BE115857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115857 /DB_XREF=gi:8508002 /DB_XREF=UI-R-BS1-axx-b-08-0-UI.s1 /CLONE=UI-R-BS1-axx-b-08-0-UI /FEA=FLmRNA /CNT=14 /TID=Rn.41556.1 /TIER=ConsEnd /STK=2 /UG=Rn.41556 /LL=57341 /UG_GENE=LOC57341 /UG_TITLE=actopaxin /FL=gb:NM_020656.2 gb:AF264765.2 BE115857 1370267_at BF287444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287444 /DB_XREF=gi:11218514 /DB_XREF=EST452035 /CLONE=RGIGG24 /FEA=FLmRNA /CNT=9 /TID=Rn.10426.1 /TIER=ConsEnd /STK=1 /UG=Rn.10426 /LL=84027 /UG_GENE=Gsk3b /UG_TITLE=glycogen synthase kinase 3 beta /FL=gb:NM_032080.1 BF287444 glycogen synthase kinase 3 beta Gsk3b 84027 NM_032080 0000320 // re-entry into mitotic cell cycle // not recorded /// 0001837 // epithelial to mesenchymal transition // inferred from sequence or structural similarity /// 0001954 // positive regulation of cell-matrix adhesion // not recorded /// 0005977 // glycogen metabolic process // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006611 // protein export from nucleus // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from direct assay /// 0006917 // induction of apoptosis // traceable author statement /// 0006950 // response to stress // not recorded /// 0006983 // ER overload response // not recorded /// 0007163 // establishment or maintenance of cell polarity // inferred from direct assay /// 0007520 // myoblast fusion // not recorded /// 0009887 // organ morphogenesis // not recorded /// 0010226 // response to lithium ion // inferred from expression pattern /// 0010800 // positive regulation of peptidyl-threonine phosphorylation // not recorded /// 0014902 // myotube differentiation // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016310 // phosphorylation // not recorded /// 0016477 // cell migration // not recorded /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0023034 // intracellular signaling pathway // not recorded /// 0030010 // establishment of cell polarity // inferred from direct assay /// 0031334 // positive regulation of protein complex assembly // not recorded /// 0032091 // negative regulation of protein binding // not recorded /// 0032855 // positive regulation of Rac GTPase activity // not recorded /// 0033138 // positive regulation of peptidyl-serine phosphorylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043407 // negative regulation of MAP kinase activity // inferred from mutant phenotype /// 0045444 // fat cell differentiation // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from direct assay /// 0046827 // positive regulation of protein export from nucleus // not recorded /// 0048168 // regulation of neuronal synaptic plasticity // inferred from mutant phenotype /// 0050774 // negative regulation of dendrite morphogenesis // inferred from mutant phenotype /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0030426 // growth cone // not recorded /// 0030877 // beta-catenin destruction complex // inferred from direct assay /// 0030877 // beta-catenin destruction complex // not recorded /// 0034747 // Axin-APC-beta-catenin-GSK3B complex // inferred from direct assay /// 0034747 // Axin-APC-beta-catenin-GSK3B complex // not recorded /// 0043025 // neuronal cell body // not recorded /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // not recorded /// 0043227 // membrane-bounded organelle // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0002039 // p53 binding // not recorded /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from physical interaction /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0016301 // kinase activity // inferred from sequence or structural similarity /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0034236 // protein kinase A catalytic subunit binding // not recorded /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction /// 0048156 // tau protein binding // inferred from direct assay /// 0050321 // tau-protein kinase activity // inferred from direct assay /// 0050321 // tau-protein kinase activity // not recorded /// 0050321 // tau-protein kinase activity // inferred from electronic annotation /// 0051059 // NF-kappaB binding // not recorded 1370268_at BM388694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388694 /DB_XREF=gi:18188747 /DB_XREF=UI-R-DZ0-ckm-f-10-0-UI.s1 /CLONE=UI-R-DZ0-ckm-f-10-0-UI /FEA=FLmRNA /CNT=9 /TID=Rn.44291.1 /TIER=ConsEnd /STK=1 /UG=Rn.44291 /LL=25470 /UG_GENE=Kcna5 /UG_TITLE=Potassium (K+) channel protein alpha 5 /FL=gb:NM_012972.1 BM388694 potassium voltage-gated channel, shaker-related subfamily, member 5 Kcna5 25470 NM_012972 0001666 // response to hypoxia // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from mutant phenotype /// 0006813 // potassium ion transport // not recorded /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0034765 // regulation of ion transmembrane transport // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043267 // negative regulation of potassium ion transport // inferred from electronic annotation /// 0043267 // negative regulation of potassium ion transport // not recorded /// 0051259 // protein oligomerization // inferred from mutant phenotype /// 0051481 // reduction of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0055075 // potassium ion homeostasis // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0008076 // voltage-gated potassium channel complex // inferred from mutant phenotype /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // not recorded /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0015271 // outward rectifier potassium channel activity // inferred from mutant phenotype /// 0019870 // potassium channel inhibitor activity // inferred from electronic annotation /// 0019870 // potassium channel inhibitor activity // not recorded 1370269_at X00469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X00469.1 /DB_XREF=gi:56043 /FEA=FLmRNA /CNT=5 /TID=Rn.10352.1 /TIER=ConsEnd /STK=1 /UG=Rn.10352 /LL=24296 /UG_GENE=Cyp1a1 /UG_TITLE=Cytochrome P450, subfamily I (aromatic compound-inducible), member A1 (C6, form c) /DEF=Rat mRNA for 3-methylcholanthrene-induced rat cytochrome P-450MC. /FL=gb:NM_012540.1 X00469 cytochrome P450, family 1, subfamily a, polypeptide 1 Cyp1a1 24296 NM_012540 0001666 // response to hypoxia // inferred from expression pattern /// 0001889 // liver development // inferred from expression pattern /// 0006778 // porphyrin metabolic process // inferred from direct assay /// 0006950 // response to stress // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008283 // cell proliferation // inferred from expression pattern /// 0009308 // amine metabolic process // inferred from electronic annotation /// 0009308 // amine metabolic process // not recorded /// 0009404 // toxin metabolic process // not recorded /// 0009404 // toxin metabolic process // inferred from electronic annotation /// 0009611 // response to wounding // inferred from expression pattern /// 0009615 // response to virus // inferred from expression pattern /// 0009624 // response to nematode // inferred from expression pattern /// 0009635 // response to herbicide // inferred from expression pattern /// 0009792 // embryo development ending in birth or egg hatching // inferred from expression pattern /// 0009804 // coumarin metabolic process // inferred from direct assay /// 0009812 // flavonoid metabolic process // inferred from direct assay /// 0010033 // response to organic substance // inferred from expression pattern /// 0010041 // response to iron(III) ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0017143 // insecticide metabolic process // inferred from direct assay /// 0017144 // drug metabolic process // inferred from electronic annotation /// 0017144 // drug metabolic process // not recorded /// 0018894 // dibenzo-p-dioxin metabolic process // inferred from direct assay /// 0018894 // dibenzo-p-dioxin metabolic process // not recorded /// 0019341 // dibenzo-p-dioxin catabolic process // inferred from direct assay /// 0019341 // dibenzo-p-dioxin catabolic process // inferred from mutant phenotype /// 0032094 // response to food // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032502 // developmental process // inferred from expression pattern /// 0033189 // response to vitamin A // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042904 // 9-cis-retinoic acid biosynthetic process // inferred from direct assay /// 0043010 // camera-type eye development // inferred from expression pattern /// 0045750 // positive regulation of S phase of mitotic cell cycle // inferred from direct assay /// 0046483 // heterocycle metabolic process // not recorded /// 0046483 // heterocycle metabolic process // inferred from electronic annotation /// 0046677 // response to antibiotic // inferred from expression pattern /// 0046685 // response to arsenic // inferred from expression pattern /// 0048565 // digestive tract development // inferred from expression pattern /// 0050665 // hydrogen peroxide biosynthetic process // inferred from electronic annotation /// 0050665 // hydrogen peroxide biosynthetic process // not recorded /// 0055093 // response to hyperoxia // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded /// 0060137 // maternal process involved in parturition // inferred from expression pattern /// 0070365 // hepatocyte differentiation // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from direct assay /// 0004497 // monooxygenase activity // inferred from direct assay /// 0004497 // monooxygenase activity // not recorded /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008395 // steroid hydroxylase activity // inferred from direct assay /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from direct assay /// 0016491 // oxidoreductase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016679 // oxidoreductase activity, acting on diphenols and related substances as donors // inferred from direct assay /// 0016711 // flavonoid 3'-monooxygenase activity // inferred from direct assay /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // not recorded /// 0019899 // enzyme binding // inferred from direct assay /// 0019899 // enzyme binding // inferred from physical interaction /// 0020037 // heme binding // inferred from electronic annotation /// 0032451 // demethylase activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation /// 0070576 // vitamin D 24-hydroxylase activity // inferred from electronic annotation /// 0070576 // vitamin D 24-hydroxylase activity // not recorded 1370270_at AB015749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB015749 /DB_XREF=gi:4579739 /FEA=FLmRNA /CNT=3 /TID=Rn.42872.1 /TIER=ConsEnd /STK=1 /UG=Rn.42872 /LL=59305 /UG_GENE=Tcam1 /UG_TITLE=testicular cell adhesion molecule 1 /DEF=Rattus norvegicus gene for testicular cell adhesion molecule 1 (TCAM1), complete cds /FL=gb:NM_021673.1 AB015749 testicular cell adhesion molecule 1 Tcam1 59305 NM_021673 0016337 // cell-cell adhesion // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 1370271_a_at M17703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M17703.2 /DB_XREF=gi:13542340 /GEN=CRP /FEA=FLmRNA /CNT=264 /TID=Rn.10942.1 /TIER=FL+Stack /STK=262 /UG=Rn.10942 /DEF=Rat contiguous repeat polypeptide (CRP) mRNA, complete cds. /PROD=contiguous repeat polypeptide /FL=gb:M17703.2 gb:M58653.1 M17703 glutamine/glutamic acid-rich protein A /// glutamine/glutamic acid-rich protein A /// rCG29588-like Grpca /// Grpcb /// LOC100360165 100360165 /// 192266 /// 360395 NM_181440 /// NM_203332 /// XM_002729435 0031214 // biomineral tissue development // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0046848 // hydroxyapatite binding // inferred from direct assay 1370272_x_at M17703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M17703.2 /DB_XREF=gi:13542340 /GEN=CRP /FEA=FLmRNA /CNT=264 /TID=Rn.10942.1 /TIER=FL+Stack /STK=262 /UG=Rn.10942 /DEF=Rat contiguous repeat polypeptide (CRP) mRNA, complete cds. /PROD=contiguous repeat polypeptide /FL=gb:M17703.2 gb:M58653.1 M17703 glutamine/glutamic acid-rich protein A /// rCG29588-like Grpca /// LOC100360165 100360165 /// 192266 NM_181440 /// XM_002729435 0031214 // biomineral tissue development // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0046848 // hydroxyapatite binding // inferred from direct assay 1370273_at M58654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M58654.1 /DB_XREF=gi:204483 /GEN=GRP-Cb /FEA=FLmRNA /CNT=209 /TID=Rn.10942.2 /TIER=FL+Stack /STK=206 /UG=Rn.10942 /DEF=Rat glutamineglutamic acid-rich protein isoform Cb (GRP-Cb) mRNA, complete cds. /PROD=glutamineglutamic acid-rich protein /FL=gb:M58654.1 M58654 glutamine/glutamic acid-rich protein A /// glutamine/glutamic acid-rich protein A /// rCG29588-like Grpca /// Grpcb /// LOC100360165 100360165 /// 192266 /// 360395 NM_181440 /// NM_203332 /// XM_002729435 0031214 // biomineral tissue development // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0046848 // hydroxyapatite binding // inferred from direct assay 1370274_at D16554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D16554.1 /DB_XREF=gi:471155 /FEA=FLmRNA /CNT=170 /TID=Rn.1253.1 /TIER=FL+Stack /STK=108 /UG=Rn.1253 /DEF=Rat mRNA for polyubiquitin (four repetitive ubiquitins in tandem), complete cds. /PROD=polyubiquitin /FL=gb:D16554.1 D16554 ubiquitin B Ubb 192255 NM_138895 1370275_at M19044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M19044.1 /DB_XREF=gi:205539 /FEA=FLmRNA /CNT=109 /TID=Rn.55007.1 /TIER=FL+Stack /STK=77 /UG=Rn.55007 /LL=171374 /UG_GENE=Atp5b /DEF=Rat mitochondrial ATP synthase beta subunit mRNA, complete cds. /PROD=ATP synthase beta subunit /FL=gb:M19044.1 M19044 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide Atp5b 171374 NM_134364 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0006172 // ADP biosynthetic process // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // not recorded /// 0006754 // ATP biosynthetic process // not recorded /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from direct assay /// 0006933 // negative regulation of cell adhesion involved in substrate-bound cell migration // inferred from electronic annotation /// 0006933 // negative regulation of cell adhesion involved in substrate-bound cell migration // not recorded /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0015992 // proton transport // not recorded /// 0046034 // ATP metabolic process // inferred from direct assay /// 0046034 // ATP metabolic process // inferred from electronic annotation /// 0051453 // regulation of intracellular pH // inferred from electronic annotation /// 0051453 // regulation of intracellular pH // not recorded 0000275 // mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005753 // mitochondrial proton-transporting ATP synthase complex // not recorded /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016469 // proton-transporting two-sector ATPase complex // inferred from electronic annotation /// 0031966 // mitochondrial membrane // not recorded /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0033178 // proton-transporting two-sector ATPase complex, catalytic domain // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded /// 0045261 // proton-transporting ATP synthase complex, catalytic core F(1) // inferred from direct assay /// 0045261 // proton-transporting ATP synthase complex, catalytic core F(1) // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from electronic annotation /// 0008553 // hydrogen-exporting ATPase activity, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0016887 // ATPase activity // inferred from mutant phenotype /// 0016887 // ATPase activity // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0030228 // lipoprotein receptor activity // inferred from direct assay /// 0042288 // MHC class I protein binding // inferred from electronic annotation /// 0042288 // MHC class I protein binding // not recorded /// 0043499 // eukaryotic cell surface binding // inferred from electronic annotation /// 0043499 // eukaryotic cell surface binding // not recorded /// 0046933 // hydrogen ion transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // not recorded 1370276_at D13127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D13127.1 /DB_XREF=gi:286245 /FEA=FLmRNA /CNT=68 /TID=Rn.1817.1 /TIER=FL+Stack /STK=50 /UG=Rn.1817 /DEF=Rattus norvegicus mRNA for oligomycin sensitivity conferring protein, complete cds. /PROD=oligomycin sensitivity conferring proteinprecursor /FL=gb:D13127.1 D13127 ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit Atp5o 192241 NM_138883 0006200 // ATP catabolic process // not recorded /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0042776 // mitochondrial ATP synthesis coupled proton transport // not recorded /// 0046034 // ATP metabolic process // inferred from direct assay 0000276 // mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005753 // mitochondrial proton-transporting ATP synthase complex // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0045261 // proton-transporting ATP synthase complex, catalytic core F(1) // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // traceable author statement 0005496 // steroid binding // inferred from direct assay /// 0008144 // drug binding // not recorded /// 0016887 // ATPase activity // not recorded /// 0032403 // protein complex binding // inferred from direct assay /// 0046933 // hydrogen ion transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation 1370277_at M23984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M23984.1 /DB_XREF=gi:205518 /FEA=FLmRNA /CNT=52 /TID=Rn.3606.1 /TIER=FL+Stack /STK=43 /UG=Rn.3606 /UG_TITLE=Rat mitochondrial protonphosphate symporter mRNA, complete cds /DEF=Rat mitochondrial protonphosphate symporter mRNA, complete cds. /FL=gb:M23984.1 M23984 solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3 Slc25a3 245959 NM_139100 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0015317 // phosphate:hydrogen symporter activity // non-traceable author statement 1370278_at U00926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U00926.1 /DB_XREF=gi:457928 /FEA=FLmRNA /CNT=50 /TID=Rn.3879.1 /TIER=FL+Stack /STK=38 /UG=Rn.3879 /DEF=Rattus norvegicus delta subunit of F1F0 ATPase gene, complete cds. /PROD=delta subunit of F1F0 ATPase /FL=gb:U00926.1 U00926 ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit Atp5d 245965 NM_139106 0006172 // ADP biosynthetic process // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006754 // ATP biosynthetic process // traceable author statement /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // traceable author statement /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0046034 // ATP metabolic process // inferred from direct assay 0000275 // mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005753 // mitochondrial proton-transporting ATP synthase complex // not recorded /// 0005759 // mitochondrial matrix // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0045259 // proton-transporting ATP synthase complex // traceable author statement /// 0045261 // proton-transporting ATP synthase complex, catalytic core F(1) // inferred from direct assay /// 0045261 // proton-transporting ATP synthase complex, catalytic core F(1) // inferred from electronic annotation 0016887 // ATPase activity // inferred from mutant phenotype /// 0016887 // ATPase activity // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0046933 // hydrogen ion transporting ATP synthase activity, rotational mechanism // traceable author statement /// 0046933 // hydrogen ion transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 1370279_at U47922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U47922.1 /DB_XREF=gi:1245161 /FEA=FLmRNA /CNT=42 /TID=Rn.44585.1 /TIER=FL+Stack /STK=37 /UG=Rn.44585 /LL=24273 /UG_GENE=Cryaa /DEF=Rattus norvegicus alpha A-crystallin mRNA, complete cds. /PROD=alpha A-crystallin /FL=gb:U47922.1 U47922 crystallin, alpha A Cryaa 24273 NM_012534 0000072 // M phase specific microtubule process // not recorded /// 0001666 // response to hypoxia // not recorded /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0002088 // lens development in camera-type eye // inferred from expression pattern /// 0002088 // lens development in camera-type eye // not recorded /// 0002089 // lens morphogenesis in camera-type eye // not recorded /// 0006457 // protein folding // inferred from direct assay /// 0006915 // apoptosis // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0007005 // mitochondrion organization // not recorded /// 0007015 // actin filament organization // not recorded /// 0007021 // tubulin complex assembly // not recorded /// 0007601 // visual perception // not recorded /// 0009408 // response to heat // inferred from electronic annotation /// 0010288 // response to lead ion // inferred from expression pattern /// 0010629 // negative regulation of gene expression // not recorded /// 0030307 // positive regulation of cell growth // not recorded /// 0032387 // negative regulation of intracellular transport // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from direct assay /// 0042542 // response to hydrogen peroxide // not recorded /// 0043010 // camera-type eye development // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043154 // negative regulation of caspase activity // not recorded /// 0048596 // embryonic camera-type eye morphogenesis // not recorded /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051260 // protein homooligomerization // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0060561 // apoptosis involved in morphogenesis // not recorded /// 0070141 // response to UV-A // not recorded /// 0070309 // lens fiber cell morphogenesis // not recorded 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0005212 // structural constituent of eye lens // traceable author statement /// 0005212 // structural constituent of eye lens // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // inferred from direct assay /// 0051082 // unfolded protein binding // not recorded 1370280_at M86443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M86443.1 /DB_XREF=gi:204660 /GEN=hypoxanthine-guanine phosporibosyltransferase /FEA=FLmRNA /CNT=51 /TID=Rn.47.1 /TIER=FL+Stack /STK=33 /UG=Rn.47 /LL=24465 /DEF=Rat hypoxanthine-guanine phosporibosyltransferase mRNA, complete cds. /PROD=hypoxanthine-guanine phosporibosyltransferase /FL=gb:M63983.1 gb:M86443.1 M86443 hypoxanthine phosphoribosyltransferase 1 Hprt1 24465 NM_012583 0001975 // response to amphetamine // inferred from electronic annotation /// 0001975 // response to amphetamine // not recorded /// 0006164 // purine nucleotide biosynthetic process // not recorded /// 0006166 // purine ribonucleoside salvage // inferred from electronic annotation /// 0006166 // purine ribonucleoside salvage // not recorded /// 0006168 // adenine salvage // inferred from electronic annotation /// 0006168 // adenine salvage // not recorded /// 0006178 // guanine salvage // inferred from electronic annotation /// 0006178 // guanine salvage // not recorded /// 0007283 // spermatogenesis // inferred from expression pattern /// 0007610 // behavior // not recorded /// 0007610 // behavior // inferred from electronic annotation /// 0007625 // grooming behavior // inferred from electronic annotation /// 0007625 // grooming behavior // not recorded /// 0008152 // metabolic process // not recorded /// 0009116 // nucleoside metabolic process // inferred from electronic annotation /// 0019835 // cytolysis // inferred from electronic annotation /// 0019835 // cytolysis // not recorded /// 0021756 // striatum development // inferred from electronic annotation /// 0021756 // striatum development // not recorded /// 0021895 // cerebral cortex neuron differentiation // inferred from electronic annotation /// 0021895 // cerebral cortex neuron differentiation // not recorded /// 0021954 // central nervous system neuron development // inferred from electronic annotation /// 0021954 // central nervous system neuron development // not recorded /// 0042417 // dopamine metabolic process // not recorded /// 0042417 // dopamine metabolic process // inferred from electronic annotation /// 0045964 // positive regulation of dopamine metabolic process // inferred from electronic annotation /// 0045964 // positive regulation of dopamine metabolic process // not recorded /// 0046083 // adenine metabolic process // inferred from electronic annotation /// 0046083 // adenine metabolic process // not recorded /// 0046100 // hypoxanthine metabolic process // inferred from direct assay /// 0046100 // hypoxanthine metabolic process // not recorded /// 0046651 // lymphocyte proliferation // inferred from electronic annotation /// 0046651 // lymphocyte proliferation // not recorded /// 0048813 // dendrite morphogenesis // inferred from electronic annotation /// 0048813 // dendrite morphogenesis // not recorded /// 0051289 // protein homotetramerization // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0000287 // magnesium ion binding // not recorded /// 0004422 // hypoxanthine phosphoribosyltransferase activity // inferred from direct assay /// 0004422 // hypoxanthine phosphoribosyltransferase activity // not recorded /// 0004422 // hypoxanthine phosphoribosyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1370281_at U13253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U13253.1 /DB_XREF=gi:533123 /FEA=FLmRNA /CNT=46 /TID=Rn.5811.1 /TIER=FL+Stack /STK=32 /UG=Rn.5811 /DEF=Rattus norvegicus Sprague-Dawley lipid-binding protein mRNA, complete cds. /PROD=lipid-binding protein /FL=gb:U13253.1 U13253 fatty acid binding protein 5, epidermal Fabp5 140868 NM_145878 0006006 // glucose metabolic process // not recorded /// 0006629 // lipid metabolic process // not recorded /// 0006656 // phosphatidylcholine biosynthetic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0009611 // response to wounding // inferred from expression pattern /// 0015758 // glucose transport // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005504 // fatty acid binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation 1370282_at U44948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U44948.1 /DB_XREF=gi:1314350 /GEN=SmLIM /FEA=FLmRNA /CNT=34 /TID=Rn.4267.2 /TIER=FL+Stack /STK=27 /UG=Rn.4267 /LL=29317 /DEF=Rattus norvegicus smooth muscle cell LIM protein (SmLIM) mRNA, complete cds. /PROD=smooth muscle cell LIM protein /FL=gb:U44948.1 U44948 cysteine and glycine-rich protein 2 Csrp2 29317 NM_177425 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045445 // myoblast differentiation // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370283_at M14050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M14050.1 /DB_XREF=gi:203150 /FEA=FLmRNA /CNT=53 /TID=Rn.11088.1 /TIER=FL+Stack /STK=26 /UG=Rn.11088 /LL=25617 /UG_GENE=Hspa5 /UG_TITLE=Heat shock 70kD protein 5 /DEF=Rat immunoglobulin heavy chain binding protein (BiP) mRNA, complete cds. /FL=gb:M14050.1 M14050 heat shock protein 5 Hspa5 25617 NM_013083 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006983 // ER overload response // inferred from electronic annotation /// 0006983 // ER overload response // not recorded /// 0006987 // activation of signaling protein activity involved in unfolded protein response // inferred from electronic annotation /// 0006987 // activation of signaling protein activity involved in unfolded protein response // not recorded /// 0021589 // cerebellum structural organization // inferred from electronic annotation /// 0021589 // cerebellum structural organization // not recorded /// 0021680 // cerebellar Purkinje cell layer development // inferred from electronic annotation /// 0021680 // cerebellar Purkinje cell layer development // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0031398 // positive regulation of protein ubiquitination // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0042149 // cellular response to glucose starvation // inferred from electronic annotation /// 0042149 // cellular response to glucose starvation // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043154 // negative regulation of caspase activity // inferred from electronic annotation /// 0043154 // negative regulation of caspase activity // not recorded /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation /// 0051603 // proteolysis involved in cellular protein catabolic process // not recorded 0005576 // extracellular region // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // not recorded /// 0005793 // ER-Golgi intermediate compartment // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0008303 // caspase complex // inferred from electronic annotation /// 0008303 // caspase complex // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded /// 0042470 // melanosome // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0043022 // ribosome binding // inferred from electronic annotation /// 0043022 // ribosome binding // not recorded /// 0043027 // caspase inhibitor activity // inferred from electronic annotation /// 0043027 // caspase inhibitor activity // not recorded /// 0051082 // unfolded protein binding // inferred from physical interaction /// 0051787 // misfolded protein binding // inferred from electronic annotation /// 0051787 // misfolded protein binding // not recorded 1370284_at AF010323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF010323.1 /DB_XREF=gi:2281590 /FEA=FLmRNA /CNT=29 /TID=Rn.3454.1 /TIER=FL+Stack /STK=26 /UG=Rn.3454 /DEF=Rattus norvegicus F1-ATPase epsilon subunit mRNA, nuclear gene encoding mitochondrial protein, complete cds. /PROD=F1-ATPase epsilon subunit /FL=gb:AF010323.1 AF010323 ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit Atp5e 245958 NM_139099 0006172 // ADP biosynthetic process // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0046034 // ATP metabolic process // inferred from direct assay 0000275 // mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) // inferred from direct assay /// 0000275 // mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005753 // mitochondrial proton-transporting ATP synthase complex // not recorded /// 0005759 // mitochondrial matrix // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0045261 // proton-transporting ATP synthase complex, catalytic core F(1) // inferred from direct assay /// 0045261 // proton-transporting ATP synthase complex, catalytic core F(1) // inferred from electronic annotation 0016887 // ATPase activity // inferred from mutant phenotype /// 0016887 // ATPase activity // not recorded /// 0046933 // hydrogen ion transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 1370285_at AY078385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY078385.1 /DB_XREF=gi:19335719 /FEA=FLmRNA /CNT=27 /TID=Rn.8293.1 /TIER=FL+Stack /STK=25 /UG=Rn.8293 /DEF=Rattus norvegicus KIAA1536 protein mRNA, complete cds. /PROD=KIAA1536 protein /FL=gb:AY078385.1 AY078385 calcium binding and coiled coil domain 1 Calcoco1 246047 NM_139190 0006350 // transcription // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030518 // steroid hormone receptor signaling pathway // inferred from electronic annotation /// 0030518 // steroid hormone receptor signaling pathway // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0000790 // nuclear chromatin // inferred from electronic annotation /// 0000790 // nuclear chromatin // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003712 // transcription cofactor activity // not recorded /// 0003712 // transcription cofactor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from electronic annotation /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0044212 // transcription regulatory region DNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // not recorded /// 0070016 // armadillo repeat domain binding // inferred from electronic annotation /// 0070016 // armadillo repeat domain binding // not recorded 1370286_at AF249673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF249673.1 /DB_XREF=gi:8248426 /GEN=ATA2 /FEA=FLmRNA /CNT=44 /TID=Rn.16393.1 /TIER=FL+Stack /STK=23 /UG=Rn.16393 /LL=170836 /DEF=Rattus norvegicus amino acid transporter system A (ATA2) mRNA, complete cds. /PROD=amino acid transporter system A /FL=gb:AF249673.1 gb:AF173682.2 gb:AF273024.1 AF249673 solute carrier family 38, member 2 Slc38a2 29642 NM_181090 0003333 // amino acid transmembrane transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015171 // amino acid transmembrane transporter activity // not recorded /// 0015293 // symporter activity // inferred from electronic annotation 1370287_a_at M23764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M23764.1 /DB_XREF=gi:207511 /FEA=FLmRNA /CNT=2 /TID=Rn.1033.5 /TIER=FL /STK=1 /UG=Rn.1033 /LL=24851 /UG_GENE=Tpm1 /UG_TITLE=Tropomyosin 1 (alpha) /DEF=Rat smooth muscle alpha-tropomyosin mRNA, complete cds. /FL=gb:M23764.1 M23764 tropomyosin 1, alpha Tpm1 24851 NM_001034068 /// NM_001034069 /// NM_001034070 /// NM_001034071 /// NM_001034072 /// NM_001034073 /// NM_001034074 /// NM_001034075 /// NM_019131 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006936 // muscle contraction // traceable author statement /// 0009790 // embryo development // inferred from electronic annotation /// 0030049 // muscle filament sliding // inferred from direct assay /// 0030336 // negative regulation of cell migration // inferred from genetic interaction /// 0031529 // ruffle organization // inferred from genetic interaction /// 0032781 // positive regulation of ATPase activity // inferred from mutant phenotype /// 0032781 // positive regulation of ATPase activity // inferred from direct assay /// 0042060 // wound healing // inferred from genetic interaction /// 0045785 // positive regulation of cell adhesion // inferred from genetic interaction /// 0051496 // positive regulation of stress fiber assembly // inferred from genetic interaction /// 0051693 // actin filament capping // inferred from direct assay /// 0060048 // cardiac muscle contraction // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030016 // myofibril // inferred from electronic annotation /// 0030018 // Z disc // inferred from mutant phenotype /// 0031941 // filamentous actin // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003779 // actin binding // inferred from mutant phenotype /// 0003779 // actin binding // traceable author statement /// 0003779 // actin binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from direct assay /// 0051015 // actin filament binding // inferred from mutant phenotype 1370288_a_at AF372216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF372216.1 /DB_XREF=gi:14134103 /FEA=FLmRNA /CNT=28 /TID=Rn.1033.2 /TIER=FL /STK=1 /UG=Rn.1033 /LL=24851 /UG_GENE=Tpm1 /DEF=Rattus norvegicus myogenic cell tropomyosin alpha isoform mRNA, complete cds, alternatively spliced. /PROD=tropomyosin alpha isoform /FL=gb:M60667.1 gb:M60666.1 gb:AF372216.1 AF372216 tropomyosin 1, alpha Tpm1 24851 NM_001034068 /// NM_001034069 /// NM_001034070 /// NM_001034071 /// NM_001034072 /// NM_001034073 /// NM_001034074 /// NM_001034075 /// NM_019131 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006936 // muscle contraction // traceable author statement /// 0009790 // embryo development // inferred from electronic annotation /// 0030049 // muscle filament sliding // inferred from direct assay /// 0030336 // negative regulation of cell migration // inferred from genetic interaction /// 0031529 // ruffle organization // inferred from genetic interaction /// 0032781 // positive regulation of ATPase activity // inferred from mutant phenotype /// 0032781 // positive regulation of ATPase activity // inferred from direct assay /// 0042060 // wound healing // inferred from genetic interaction /// 0045785 // positive regulation of cell adhesion // inferred from genetic interaction /// 0051496 // positive regulation of stress fiber assembly // inferred from genetic interaction /// 0051693 // actin filament capping // inferred from direct assay /// 0060048 // cardiac muscle contraction // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030016 // myofibril // inferred from electronic annotation /// 0030018 // Z disc // inferred from mutant phenotype /// 0031941 // filamentous actin // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003779 // actin binding // inferred from mutant phenotype /// 0003779 // actin binding // traceable author statement /// 0003779 // actin binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from direct assay /// 0051015 // actin filament binding // inferred from mutant phenotype 1370289_x_at M11566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M11566.1 /DB_XREF=gi:205035 /FEA=FLmRNA /CNT=22 /TID=Rn.34527.1 /TIER=FL+Stack /STK=22 /UG=Rn.34527 /UG_TITLE=Rat submaxillary gland S3 kallikrein mRNA, complete cds /DEF=Rat submaxillary gland S3 kallikrein mRNA, complete cds. /FL=gb:M11566.1 M11566 kallikrein, submaxillary gland S3 Klks3 292868 NM_175759 0006508 // proteolysis // inferred from electronic annotation /// 0045907 // positive regulation of vasoconstriction // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1370290_at AB011679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB011679.1 /DB_XREF=gi:3551053 /FEA=FLmRNA /CNT=130 /TID=Rn.2458.1 /TIER=FL+Stack /STK=21 /UG=Rn.2458 /DEF=Rattus norvegicus mRNA for class I beta-tubulin, complete cds. /PROD=class I beta-tubulin /FL=gb:AB011679.1 AB011679 tubulin, beta 5 Tubb5 29214 NM_173102 0001764 // neuron migration // inferred from electronic annotation /// 0007017 // microtubule-based process // not recorded /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007067 // mitosis // inferred from mutant phenotype /// 0007411 // axon guidance // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from mutant phenotype /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0032720 // negative regulation of tumor necrosis factor production // inferred from electronic annotation /// 0051225 // spindle assembly // inferred from electronic annotation /// 0051225 // spindle assembly // not recorded /// 0051258 // protein polymerization // inferred from electronic annotation /// 0070914 // UV-damage excision repair // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0005874 // microtubule // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0004980 // melanocyte-stimulating hormone receptor activity // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // not recorded /// 0005200 // structural constituent of cytoskeleton // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0042277 // peptide binding // inferred from physical interaction /// 0042288 // MHC class I protein binding // inferred from electronic annotation /// 0042288 // MHC class I protein binding // not recorded 1370291_at AF002281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF002281.1 /DB_XREF=gi:3138921 /FEA=FLmRNA /CNT=22 /TID=Rn.13361.1 /TIER=FL+Stack /STK=21 /UG=Rn.13361 /LL=114108 /UG_GENE=Pdlim3 /DEF=Rattus norvegicus alpha-actinin-2 associated LIM protein mRNA, complete cds. /PROD=alpha-actinin-2 associated LIM protein /FL=gb:AF002281.1 AF002281 PDZ and LIM domain 3 Pdlim3 114108 NM_053650 0007015 // actin filament organization // not recorded /// 0007507 // heart development // not recorded /// 0007519 // skeletal muscle tissue development // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0015629 // actin cytoskeleton // not recorded /// 0030018 // Z disc // inferred from direct assay /// 0030018 // Z disc // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008307 // structural constituent of muscle // not recorded /// 0042805 // actinin binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1370292_a_at J00717 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J00717.1 /DB_XREF=gi:203632 /FEA=FLmRNA /CNT=22 /TID=Rn.33531.1 /TIER=FL+Stack /STK=20 /UG=Rn.33531 /LL=24277 /UG_GENE=Crygc /UG_TITLE=Crystallin, gamma polypeptide 3 /DEF=Rat lens gamma-C-crystallin (gamma 2-1) mRNA, complete cds. /FL=gb:J00717.1 J00717 crystallin, gamma C Crygc 24277 NM_001081660 /// NM_033483 0001654 // eye development // not recorded /// 0001654 // eye development // inferred from electronic annotation /// 0002088 // lens development in camera-type eye // inferred from expression pattern /// 0007601 // visual perception // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0043010 // camera-type eye development // not recorded /// 0043010 // camera-type eye development // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005212 // structural constituent of eye lens // traceable author statement /// 0005212 // structural constituent of eye lens // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370293_at AI234969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234969 /DB_XREF=gi:3828475 /DB_XREF=EST231531 /CLONE=ROVCK87 /FEA=FLmRNA /CNT=67 /TID=Rn.26251.1 /TIER=Stack /STK=43 /UG=Rn.26251 /LL=54254 /UG_GENE=Gata4 /UG_TITLE=GATA-binding protein 4 /FL=gb:L22761.1 AI234969 GATA binding protein 4 Gata4 54254 NM_144730 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0007275 // multicellular organismal development // traceable author statement /// 0007507 // heart development // not recorded /// 0007507 // heart development // traceable author statement /// 0007507 // heart development // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0030513 // positive regulation of BMP signaling pathway // inferred from direct assay /// 0035050 // embryonic heart tube development // not recorded /// 0035050 // embryonic heart tube development // inferred from electronic annotation /// 0035054 // embryonic heart tube anterior/posterior pattern formation // inferred from electronic annotation /// 0035054 // embryonic heart tube anterior/posterior pattern formation // not recorded /// 0043627 // response to estrogen stimulus // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048557 // embryonic digestive tract morphogenesis // not recorded /// 0048598 // embryonic morphogenesis // not recorded /// 0048598 // embryonic morphogenesis // inferred from electronic annotation /// 0048617 // embryonic foregut morphogenesis // inferred from electronic annotation /// 0048617 // embryonic foregut morphogenesis // not recorded /// 0060043 // regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060043 // regulation of cardiac muscle cell proliferation // not recorded /// 0060395 // SMAD protein signal transduction // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // not recorded /// 0060413 // atrial septum morphogenesis // inferred from electronic annotation /// 0060413 // atrial septum morphogenesis // not recorded /// 0060575 // intestinal epithelial cell differentiation // inferred from electronic annotation /// 0060575 // intestinal epithelial cell differentiation // not recorded /// 0071371 // cellular response to gonadotropin stimulus // not recorded /// 0071371 // cellular response to gonadotropin stimulus // inferred from electronic annotation /// 0071372 // cellular response to follicle-stimulating hormone stimulus // inferred from electronic annotation /// 0071372 // cellular response to follicle-stimulating hormone stimulus // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003704 // specific RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003704 // specific RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from direct assay /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // traceable author statement /// 0010843 // promoter binding // inferred from direct assay /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0033613 // transcription activator binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from mutant phenotype /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1370294_a_at U05341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U05341.1 /DB_XREF=gi:468033 /FEA=FLmRNA /CNT=22 /TID=Rn.9262.1 /TIER=FL+Stack /STK=19 /UG=Rn.9262 /LL=64515 /UG_GENE=Cdc20 /DEF=Rattus norvegicus p55CDC mRNA, complete cds. /PROD=p55CDC /FL=gb:U05341.1 U05341 cell division cycle 20 homolog (S. cerevisiae) Cdc20 64515 NM_171993 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0050773 // regulation of dendrite development // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0005654 // nucleoplasm // not recorded /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0019899 // enzyme binding // not recorded 1370295_at D13374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D13374.1 /DB_XREF=gi:286231 /FEA=FLmRNA /CNT=21 /TID=Rn.6236.1 /TIER=FL+Stack /STK=19 /UG=Rn.6236 /DEF=Rat mRNA for nucleoside diphosphate kinase beta isoform, complete cds. /PROD=nucleoside diphosphate kinase beta isoform /FL=gb:D13374.1 D13374 non-metastatic cells 1, protein (NM23A) expressed in Nme1 191575 NM_138548 0002762 // negative regulation of myeloid leukocyte differentiation // inferred from direct assay /// 0006165 // nucleoside diphosphate phosphorylation // inferred from direct assay /// 0006183 // GTP biosynthetic process // inferred from electronic annotation /// 0006228 // UTP biosynthetic process // inferred from electronic annotation /// 0006241 // CTP biosynthetic process // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007595 // lactation // inferred from electronic annotation /// 0007595 // lactation // not recorded /// 0009117 // nucleotide metabolic process // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030879 // mammary gland development // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0043388 // positive regulation of DNA binding // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0051591 // response to cAMP // inferred from expression pattern 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005882 // intermediate filament // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004536 // deoxyribonuclease activity // not recorded /// 0004550 // nucleoside diphosphate kinase activity // inferred from direct assay /// 0004550 // nucleoside diphosphate kinase activity // not recorded /// 0004550 // nucleoside diphosphate kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005525 // GTP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0043015 // gamma-tubulin binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1370296_at M34728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M34728.1 /DB_XREF=gi:206871 /FEA=FLmRNA /CNT=40 /TID=Rn.31887.1 /TIER=FL+Stack /STK=18 /UG=Rn.31887 /LL=25541 /UG_GENE=Scp2 /UG_TITLE=Sterol carrier protein 2, liver /DEF=Rat sterol carrier protein-2 (SCP-2) mRNA, complete cds. /FL=gb:M62763.1 gb:M34728.1 M34728 podocan /// sterol carrier protein 2 Podn /// Scp2 25541 /// 313483 NM_138508 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0007031 // peroxisome organization // not recorded /// 0008152 // metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation /// 0032934 // sterol binding // inferred from electronic annotation /// 0033814 // propanoyl-CoA C-acyltransferase activity // inferred from electronic annotation 1370297_at U10188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U10188.1 /DB_XREF=gi:497993 /GEN=plk /FEA=FLmRNA /CNT=25 /TID=Rn.11034.1 /TIER=FL+Stack /STK=18 /UG=Rn.11034 /LL=25515 /DEF=Rattus norvegicus polo like kinase (plk) mRNA, complete cds. /PROD=polo like kinase /FL=gb:U10188.1 U10188 polo-like kinase 1 (Drosophila) Plk1 25515 NM_017100 0000236 // mitotic prometaphase // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // not recorded /// 0007067 // mitosis // inferred from sequence or structural similarity /// 0007067 // mitosis // inferred from electronic annotation /// 0007346 // regulation of mitotic cell cycle // not recorded /// 0031572 // G2/M transition DNA damage checkpoint // not recorded /// 0031572 // G2/M transition DNA damage checkpoint // inferred from sequence or structural similarity /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0040038 // polar body extrusion after meiotic divisions // inferred from mutant phenotype /// 0046677 // response to antibiotic // inferred from expression pattern /// 0051301 // cell division // inferred from electronic annotation /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051443 // positive regulation of ubiquitin-protein ligase activity // not recorded /// 0051443 // positive regulation of ubiquitin-protein ligase activity // inferred from sequence or structural similarity 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // not recorded /// 0000776 // kinetochore // inferred from sequence or structural similarity /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0000922 // spindle pole // inferred from direct assay /// 0000942 // condensed nuclear chromosome outer kinetochore // inferred from electronic annotation /// 0000942 // condensed nuclear chromosome outer kinetochore // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005813 // centrosome // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0051233 // spindle midzone // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0010997 // anaphase-promoting complex binding // not recorded /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0042801 // polo kinase kinase activity // inferred from electronic annotation /// 0042801 // polo kinase kinase activity // not recorded 1370298_at AF052042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF052042.1 /DB_XREF=gi:3916123 /GEN=RLZF-Y /FEA=FLmRNA /CNT=24 /TID=Rn.32253.1 /TIER=FL+Stack /STK=18 /UG=Rn.32253 /DEF=Rattus norvegicus zinc finger protein Y1 (RLZF-Y) mRNA, complete cds. /PROD=zinc finger protein Y1 /FL=gb:AF052042.1 AF052042 coiled-coil domain containing 56 Ccdc56 498000 NM_001109047 0005739 // mitochondrion // not recorded 1370299_at M10149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M10149.1 /DB_XREF=gi:202839 /FEA=FLmRNA /CNT=26 /TID=Rn.10592.1 /TIER=FL+Stack /STK=17 /UG=Rn.10592 /LL=24190 /UG_GENE=Aldob /UG_TITLE=Aldolase B, fructose-biphosphate /DEF=Rat liver aldolase B mRNA, complete cds. /FL=gb:M10149.1 M10149 aldolase B, fructose-bisphosphate Aldob 24190 NM_012496 0001889 // liver development // inferred from expression pattern /// 0006000 // fructose metabolic process // not recorded /// 0006000 // fructose metabolic process // inferred from electronic annotation /// 0006096 // glycolysis // inferred from direct assay /// 0006096 // glycolysis // not recorded /// 0006096 // glycolysis // inferred from electronic annotation /// 0006116 // NADH oxidation // inferred from electronic annotation /// 0006116 // NADH oxidation // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009743 // response to carbohydrate stimulus // inferred from expression pattern /// 0009750 // response to fructose stimulus // inferred from expression pattern /// 0010043 // response to zinc ion // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030388 // fructose 1,6-bisphosphate metabolic process // inferred from electronic annotation /// 0030388 // fructose 1,6-bisphosphate metabolic process // not recorded /// 0031668 // cellular response to extracellular stimulus // inferred from expression pattern /// 0032781 // positive regulation of ATPase activity // inferred from electronic annotation /// 0032781 // positive regulation of ATPase activity // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0042221 // response to chemical stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042594 // response to starvation // inferred from expression pattern /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0046688 // response to copper ion // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0070072 // vacuolar proton-transporting V-type ATPase complex assembly // inferred from electronic annotation /// 0070072 // vacuolar proton-transporting V-type ATPase complex assembly // not recorded /// 0070741 // response to interleukin-6 // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005815 // microtubule organizing center // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0030867 // rough endoplasmic reticulum membrane // inferred from direct assay /// 0030868 // smooth endoplasmic reticulum membrane // inferred from direct assay /// 0034451 // centriolar satellite // inferred from electronic annotation /// 0034451 // centriolar satellite // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004332 // fructose-bisphosphate aldolase activity // inferred from direct assay /// 0004332 // fructose-bisphosphate aldolase activity // not recorded /// 0004332 // fructose-bisphosphate aldolase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // not recorded /// 0016829 // lyase activity // inferred from electronic annotation /// 0031210 // phosphatidylcholine binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0051117 // ATPase binding // inferred from electronic annotation /// 0051117 // ATPase binding // not recorded /// 0070061 // fructose binding // inferred from electronic annotation /// 0070061 // fructose binding // not recorded 1370300_at AF061817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF061817.1 /DB_XREF=gi:4726072 /GEN=Preb /FEA=FLmRNA /CNT=21 /TID=Rn.8131.1 /TIER=FL+Stack /STK=17 /UG=Rn.8131 /LL=58842 /DEF=Rattus norvegicus DNA-binding protein PREB (Preb) mRNA, complete cds. /PROD=DNA-binding protein PREB /FL=gb:AF061817.1 AF061817 prolactin regulatory element binding Preb 58842 NM_001170708 /// XM_002726713 /// XM_002729612 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // inferred from direct assay 1370301_at U65656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U65656.1 /DB_XREF=gi:1813502 /FEA=FLmRNA /CNT=21 /TID=Rn.6422.1 /TIER=FL+Stack /STK=16 /UG=Rn.6422 /DEF=Rattus norvegicus gelatinase A mRNA, complete cds. /PROD=gelatinase A /FL=gb:U65656.1 U65656 matrix metallopeptidase 2 Mmp2 81686 NM_031054 0001525 // angiogenesis // inferred from expression pattern /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001541 // ovarian follicle development // inferred from direct assay /// 0001542 // ovulation from ovarian follicle // inferred from expression pattern /// 0001666 // response to hypoxia // inferred from direct assay /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001955 // blood vessel maturation // not recorded /// 0001955 // blood vessel maturation // inferred from electronic annotation /// 0001957 // intramembranous ossification // not recorded /// 0001957 // intramembranous ossification // inferred from electronic annotation /// 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from direct assay /// 0007162 // negative regulation of cell adhesion // inferred from direct assay /// 0007565 // female pregnancy // inferred from expression pattern /// 0007567 // parturition // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0009314 // response to radiation // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from direct assay /// 0014012 // peripheral nervous system axon regeneration // inferred from direct assay /// 0014823 // response to activity // inferred from expression pattern /// 0016049 // cell growth // inferred from expression pattern /// 0016477 // cell migration // inferred from mutant phenotype /// 0030574 // collagen catabolic process // inferred from electronic annotation /// 0030574 // collagen catabolic process // not recorded /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0035094 // response to nicotine // inferred from expression pattern /// 0042493 // response to drug // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from direct assay /// 0043065 // positive regulation of apoptosis // inferred from direct assay /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0045906 // negative regulation of vasoconstriction // inferred from direct assay /// 0048705 // skeletal system morphogenesis // not recorded /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0048771 // tissue remodeling // inferred from direct assay /// 0051602 // response to electrical stimulus // inferred from expression pattern /// 0060033 // anatomical structure regression // inferred from expression pattern /// 0060325 // face morphogenesis // not recorded /// 0060325 // face morphogenesis // inferred from electronic annotation /// 0060346 // bone trabecula formation // not recorded /// 0060346 // bone trabecula formation // inferred from electronic annotation /// 0060740 // prostate gland epithelium morphogenesis // inferred from mutant phenotype /// 0071345 // cellular response to cytokine stimulus // inferred from expression pattern /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071392 // cellular response to estradiol stimulus // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030017 // sarcomere // not recorded /// 0030017 // sarcomere // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0001968 // fibronectin binding // inferred from physical interaction /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // traceable author statement /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370302_at AF348365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF348365.1 /DB_XREF=gi:13195583 /FEA=FLmRNA /CNT=18 /TID=Rn.16033.1 /TIER=FL+Stack /STK=16 /UG=Rn.16033 /DEF=Rattus norvegicus thyroid hormone-response protein-1 mRNA, complete cds. /PROD=thyroid hormone-response protein-1 /FL=gb:AF348365.1 AF348365 shroom family member 2 Shroom2 317435 NM_001047893 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016477 // cell migration // inferred from sequence or structural similarity /// 0030835 // negative regulation of actin filament depolymerization // not recorded /// 0032438 // melanosome organization // not recorded /// 0032438 // melanosome organization // inferred from sequence or structural similarity /// 0045217 // cell-cell junction maintenance // not recorded /// 0051017 // actin filament bundle assembly // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // not recorded /// 0005856 // cytoskeleton // inferred from sequence or structural similarity /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0005913 // cell-cell adherens junction // not recorded /// 0005923 // tight junction // not recorded /// 0005923 // tight junction // inferred from sequence or structural similarity /// 0005923 // tight junction // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // not recorded /// 0031941 // filamentous actin // not recorded /// 0043025 // neuronal cell body // not recorded /// 0043296 // apical junction complex // not recorded 0003779 // actin binding // not recorded /// 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008013 // beta-catenin binding // not recorded /// 0019904 // protein domain specific binding // not recorded /// 0051015 // actin filament binding // not recorded 1370303_at AF406814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF406814.1 /DB_XREF=gi:15384272 /FEA=FLmRNA /CNT=18 /TID=Rn.15468.1 /TIER=FL+Stack /STK=16 /UG=Rn.15468 /DEF=Rattus norvegicus clone PLRR-4 polymorphic leucine-rich repeat protein mRNA, complete cds. /PROD=polymorphic leucine-rich repeat protein /FL=gb:AF406814.1 AF406814 solute carrier family 35, member A4 Slc35a4 257647 NM_147140 0006810 // transport // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0015780 // nucleotide-sugar transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005338 // nucleotide-sugar transmembrane transporter activity // inferred from electronic annotation /// 0005351 // sugar:hydrogen symporter activity // inferred from electronic annotation 1370304_at AB006450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB006450.1 /DB_XREF=gi:2335036 /FEA=FLmRNA /CNT=23 /TID=Rn.22514.1 /TIER=FL+Stack /STK=15 /UG=Rn.22514 /LL=54311 /UG_GENE=Timm17a /DEF=Rattus norvegicus mRNA for Tim17, complete cds. /PROD=Tim17 /FL=gb:AB006450.1 AB006450 translocase of inner mitochondrial membrane 17 homolog A (yeast) Timm17a 54311 NM_019351 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005744 // mitochondrial inner membrane presequence translocase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction 1370305_at U96490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U96490.1 /DB_XREF=gi:2352085 /FEA=FLmRNA /CNT=23 /TID=Rn.7355.1 /TIER=FL+Stack /STK=15 /UG=Rn.7355 /LL=171441 /UG_GENE=LOC171441 /DEF=Rattus norvegicus liver mRNA, complete cds. /PROD=unknown /FL=gb:U96490.1 U96490 Yip1 interacting factor homolog (S. cerevisiae) Yif1 171441 NM_172017 1370306_at AB017544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB017544.1 /DB_XREF=gi:4126961 /GEN=Pex14 /FEA=FLmRNA /CNT=21 /TID=Rn.7844.1 /TIER=FL+Stack /STK=15 /UG=Rn.7844 /LL=64460 /DEF=Rattus norvegicus Pex14 mRNA for peroxisomal membrane anchor protein, complete cds. /PROD=peroxisomal membrane anchor protein /FL=gb:AB017544.1 AB017544 peroxisomal biogenesis factor 14 Pex14 64460 NM_172063 0006810 // transport // inferred from electronic annotation /// 0007031 // peroxisome organization // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0016558 // protein import into peroxisome matrix // inferred from electronic annotation /// 0016558 // protein import into peroxisome matrix // not recorded /// 0032582 // negative regulation of gene-specific transcription // inferred from electronic annotation /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0043433 // negative regulation of transcription factor activity // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // not recorded /// 0005777 // peroxisome // inferred from sequence or structural similarity /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // not recorded /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1370307_at M64780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M64780.1 /DB_XREF=gi:202798 /GEN=agrin /FEA=FLmRNA /CNT=20 /TID=Rn.2163.1 /TIER=FL+Stack /STK=15 /UG=Rn.2163 /DEF=Rat agrin mRNA, complete cds. /PROD=agrin /FL=gb:M64780.1 M64780 agrin Agrn 25592 NM_175754 0007009 // plasma membrane organization // inferred from electronic annotation /// 0007009 // plasma membrane organization // not recorded /// 0007213 // muscarinic acetylcholine receptor signaling pathway // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from mutant phenotype /// 0007268 // synaptic transmission // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007416 // synapse assembly // inferred from mutant phenotype /// 0007528 // neuromuscular junction development // not recorded /// 0007528 // neuromuscular junction development // traceable author statement /// 0007528 // neuromuscular junction development // inferred from electronic annotation /// 0008582 // regulation of synaptic growth at neuromuscular junction // inferred from electronic annotation /// 0008582 // regulation of synaptic growth at neuromuscular junction // not recorded /// 0010469 // regulation of receptor activity // not recorded /// 0043113 // receptor clustering // inferred from direct assay /// 0043113 // receptor clustering // inferred from electronic annotation /// 0043113 // receptor clustering // not recorded /// 0043113 // receptor clustering // inferred from sequence or structural similarity /// 0045213 // neurotransmitter receptor metabolic process // inferred from electronic annotation /// 0045213 // neurotransmitter receptor metabolic process // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from direct assay /// 0005604 // basement membrane // not recorded /// 0005604 // basement membrane // inferred from electronic annotation /// 0005605 // basal lamina // inferred from electronic annotation /// 0005605 // basal lamina // not recorded /// 0005605 // basal lamina // inferred from sequence or structural similarity /// 0005615 // extracellular space // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0031012 // extracellular matrix // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030548 // acetylcholine receptor regulator activity // inferred from electronic annotation /// 0030548 // acetylcholine receptor regulator activity // not recorded /// 0043236 // laminin binding // inferred from electronic annotation 1370308_at AY029335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY029335.1 /DB_XREF=gi:13752751 /FEA=FLmRNA /CNT=18 /TID=Rn.8733.1 /TIER=FL+Stack /STK=15 /UG=Rn.8733 /DEF=Rattus norvegicus RS21-C6 protein mRNA, complete cds. /PROD=RS21-C6 protein /FL=gb:AF331839.1 gb:AY029335.1 AY029335 dCTP pyrophosphatase 1 Dctpp1 192252 NM_138892 0009143 // nucleoside triphosphate catabolic process // not recorded /// 0009143 // nucleoside triphosphate catabolic process // inferred from sequence or structural similarity /// 0051289 // protein homotetramerization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0016462 // pyrophosphatase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0032556 // pyrimidine deoxyribonucleotide binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047429 // nucleoside-triphosphate diphosphatase activity // not recorded /// 0047429 // nucleoside-triphosphate diphosphatase activity // inferred from sequence or structural similarity /// 0047840 // dCTP diphosphatase activity // inferred from electronic annotation 1370309_a_at AJ238854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ238854.1 /DB_XREF=gi:6562844 /FEA=mRNA /CNT=1 /TID=Rn.1427.4 /TIER=ConsEnd /STK=0 /UG=Rn.1427 /LL=83498 /UG_GENE=Hnrpab /DEF=Rattus norvegicus mRNA for type AB hnRNP protein p40. /PROD=heterogeneous nuclear ribonucleoprotein AJ238854 heterogeneous nuclear ribonucleoprotein A/B Hnrnpab 83498 NM_031330 0001837 // epithelial to mesenchymal transition // not recorded /// 0001837 // epithelial to mesenchymal transition // inferred from sequence or structural similarity /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from direct assay 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003688 // DNA replication origin binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity 1370310_at M33648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M33648.1 /DB_XREF=gi:204618 /FEA=FLmRNA /CNT=19 /TID=Rn.29594.1 /TIER=FL+Stack /STK=14 /UG=Rn.29594 /UG_TITLE=Rat mitochondrial 3-hydroxy-3-methylglutaryl-CoA synthase mRNA, complete cds /DEF=Rat mitochondrial 3-hydroxy-3-methylglutaryl-CoA synthase mRNA, complete cds. /FL=gb:M33648.1 M33648 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2 (mitochondrial) Hmgcs2 24450 NM_173094 0001822 // kidney development // inferred from expression pattern /// 0001889 // liver development // inferred from expression pattern /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0007494 // midgut development // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0009266 // response to temperature stimulus // inferred from expression pattern /// 0009617 // response to bacterium // inferred from expression pattern /// 0010038 // response to metal ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0030324 // lung development // inferred from expression pattern /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0033555 // multicellular organismal response to stress // inferred from expression pattern /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0033762 // response to glucagon stimulus // inferred from expression pattern /// 0034014 // response to triglyceride // inferred from expression pattern /// 0034284 // response to monosaccharide stimulus // inferred from expression pattern /// 0034696 // response to prostaglandin F stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042594 // response to starvation // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0046951 // ketone body biosynthetic process // inferred from expression pattern /// 0046951 // ketone body biosynthetic process // traceable author statement /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern /// 0060416 // response to growth hormone stimulus // inferred from expression pattern /// 0060612 // adipose tissue development // inferred from expression pattern /// 0070542 // response to fatty acid // inferred from expression pattern /// 0070543 // response to linoleic acid // inferred from expression pattern /// 0071222 // cellular response to lipopolysaccharide // inferred from expression pattern /// 0071230 // cellular response to amino acid stimulus // inferred from expression pattern /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern /// 0071398 // cellular response to fatty acid // inferred from expression pattern /// 0071407 // cellular response to organic cyclic substance // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004421 // hydroxymethylglutaryl-CoA synthase activity // inferred from direct assay /// 0004421 // hydroxymethylglutaryl-CoA synthase activity // not recorded /// 0004421 // hydroxymethylglutaryl-CoA synthase activity // traceable author statement /// 0004421 // hydroxymethylglutaryl-CoA synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1370311_at U05821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U05821.1 /DB_XREF=gi:623032 /GEN=eIF-2a /FEA=FLmRNA /CNT=19 /TID=Rn.9181.1 /TIER=FL+Stack /STK=14 /UG=Rn.9181 /LL=64514 /DEF=Rattus norvegicus translation initiation factor eIF-2B alpha-subunit (eIF-2a) mRNA, complete cds. /PROD=translation initiation factor eIF-2Balpha-subunit /FL=gb:U05821.1 U05821 eukaryotic translation initiation factor 2B, subunit 1 alpha Eif2b1 64514 NM_172029 0006412 // translation // inferred from direct assay /// 0006412 // translation // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from direct assay /// 0006413 // translational initiation // not recorded /// 0006413 // translational initiation // inferred from sequence or structural similarity /// 0006413 // translational initiation // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from mutant phenotype /// 0009408 // response to heat // inferred from direct assay /// 0009749 // response to glucose stimulus // inferred from direct assay /// 0014003 // oligodendrocyte development // not recorded /// 0014003 // oligodendrocyte development // inferred from sequence or structural similarity /// 0014003 // oligodendrocyte development // inferred from electronic annotation /// 0032057 // negative regulation of translational initiation in response to stress // inferred from mutant phenotype /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0044237 // cellular metabolic process // inferred from electronic annotation /// 0051716 // cellular response to stimulus // not recorded /// 0051716 // cellular response to stimulus // inferred from sequence or structural similarity /// 0051716 // cellular response to stimulus // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005850 // eukaryotic translation initiation factor 2 complex // inferred from direct assay /// 0005850 // eukaryotic translation initiation factor 2 complex // traceable author statement /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from physical interaction /// 0005851 // eukaryotic translation initiation factor 2B complex // not recorded /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from sequence or structural similarity /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0003743 // translation initiation factor activity // inferred from direct assay /// 0003743 // translation initiation factor activity // not recorded /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // translation initiation factor activity // traceable author statement /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from genetic interaction /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from mutant phenotype /// 0019003 // GDP binding // inferred from direct assay /// 0030234 // enzyme regulator activity // inferred from mutant phenotype 1370312_at M88469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M88469.1 /DB_XREF=gi:204176 /GEN=f-spondin /FEA=FLmRNA /CNT=20 /TID=Rn.7546.1 /TIER=FL+Stack /STK=14 /UG=Rn.7546 /LL=64456 /DEF=Rattus norvegicus f-spondin mRNA, complete cds. /PROD=f-spondin /FL=gb:M88469.1 M88469 spondin 1, extracellular matrix protein Spon1 64456 NM_172067 0007155 // cell adhesion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1370313_at D88891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D88891.1 /DB_XREF=gi:1944429 /GEN=rLACH1 /FEA=FLmRNA /CNT=17 /TID=Rn.6024.1 /TIER=FL+Stack /STK=14 /UG=Rn.6024 /LL=26759 /DEF=Rattus norvegicus mRNA for acyl-CoA hydrolase, complete cds. /PROD=acyl-CoA hydrolase /FL=gb:D88891.1 D88891 acyl-CoA thioesterase 7 Acot7 26759 NM_001146061 /// NM_013214 0006685 // sphingomyelin catabolic process // inferred from electronic annotation /// 0009062 // fatty acid catabolic process // inferred from electronic annotation /// 0009062 // fatty acid catabolic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016290 // palmitoyl-CoA hydrolase activity // inferred from electronic annotation /// 0016290 // palmitoyl-CoA hydrolase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0047617 // acyl-CoA hydrolase activity // inferred from direct assay /// 0050290 // sphingomyelin phosphodiesterase D activity // inferred from electronic annotation 1370314_at AB000489 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB000489.1 /DB_XREF=gi:9695267 /FEA=FLmRNA /CNT=18 /TID=Rn.8759.1 /TIER=FL+Stack /STK=14 /UG=Rn.8759 /LL=81826 /UG_GENE=Slc20a1 /DEF=Rattus norvegicus mRNA for RPHO-1, complete cds. /PROD=RPHO-1 /FL=gb:AB000489.1 AB000489 solute carrier family 20 (phosphate transporter), member 1 Slc20a1 81826 NM_031148 0006810 // transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006817 // phosphate transport // inferred from direct assay /// 0006817 // phosphate transport // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005315 // inorganic phosphate transmembrane transporter activity // inferred from electronic annotation /// 0005316 // high affinity inorganic phosphate:sodium symporter activity // inferred from direct assay /// 0015293 // symporter activity // inferred from electronic annotation 1370315_a_at AF026530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF026530.1 /DB_XREF=gi:4003298 /FEA=FLmRNA /CNT=2 /TID=Rn.5658.2 /TIER=FL /STK=1 /UG=Rn.5658 /LL=79423 /UG_GENE=Rb3 /DEF=Rattus norvegicus stathmin-like-protein splice variant RB3 mRNA, complete cds. /PROD=stathmin-like-protein splice variant RB3 /FL=gb:AF026530.1 AF026530 stathmin-like 4 Stmn4 79423 NM_019176 0023034 // intracellular signaling pathway // inferred from electronic annotation 1370316_at AF187860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF187860.1 /DB_XREF=gi:7025330 /FEA=FLmRNA /CNT=20 /TID=Rn.4297.1 /TIER=FL+Stack /STK=13 /UG=Rn.4297 /DEF=Rattus norvegicus Hsp70 binding protein HspBP mRNA, complete cds. /PROD=Hsp70 binding protein HspBP /FL=gb:AF187860.1 AF187860 HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1 Hspbp1 246146 NM_139261 0031398 // positive regulation of protein ubiquitination // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370317_at U78090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U78090.1 /DB_XREF=gi:3513450 /FEA=FLmRNA /CNT=19 /TID=Rn.3635.1 /TIER=FL+Stack /STK=13 /UG=Rn.3635 /DEF=Rattus norvegicus potassium channel regulator 1 mRNA, complete cds. /PROD=potassium channel regulator 1 /FL=gb:U78090.1 U78090 asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe) Alg10 245960 NM_139101 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0015459 // potassium channel regulator activity // inferred from mutant phenotype /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1370318_at U39572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U39572.1 /DB_XREF=gi:4096761 /FEA=FLmRNA /CNT=22 /TID=Rn.11015.1 /TIER=FL+Stack /STK=13 /UG=Rn.11015 /LL=64161 /UG_GENE=Pik4ca /DEF=Rattus norvegicus phosphatidylinositol 4-kinase mRNA, complete cds. /PROD=phosphatidylinositol 4-kinase /FL=gb:D83538.1 gb:U39572.1 U39572 phosphatidylinositol 4-kinase, catalytic, alpha Pi4ka 64161 NM_022301 0046854 // phosphoinositide phosphorylation // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation 0030660 // Golgi-associated vesicle membrane // inferred from direct assay 0004428 // inositol or phosphatidylinositol kinase activity // inferred from electronic annotation /// 0004430 // 1-phosphatidylinositol 4-kinase activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1370319_at U68544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U68544.1 /DB_XREF=gi:1549270 /FEA=FLmRNA /CNT=17 /TID=Rn.2923.1 /TIER=FL+Stack /STK=13 /UG=Rn.2923 /DEF=Rattus norvegicus cyclophilin D mRNA, nuclear gene encoding mitochondrial protein, complete cds. /PROD=cyclophilin D /FL=gb:U68544.1 U68544 peptidylprolyl isomerase F Ppif 282819 NM_172243 0006457 // protein folding // inferred from electronic annotation /// 0042981 // regulation of apoptosis // inferred from direct assay /// 0046902 // regulation of mitochondrial membrane permeability // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from direct assay /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016018 // cyclosporin A binding // inferred from direct assay /// 0016853 // isomerase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0042277 // peptide binding // inferred from electronic annotation 1370320_at AY083160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY083160.1 /DB_XREF=gi:19743769 /FEA=FLmRNA /CNT=17 /TID=Rn.2417.1 /TIER=FL+Stack /STK=12 /UG=Rn.2417 /DEF=Rattus norvegicus MAWDBP mRNA, complete cds. /PROD=MAWDBP /FL=gb:AY083160.1 AY083160 phenazine biosynthesis-like protein domain containing Pbld 171564 NM_138530 0009058 // biosynthetic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1370321_at AF262320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF262320.1 /DB_XREF=gi:14279175 /FEA=FLmRNA /CNT=15 /TID=Rn.8124.1 /TIER=FL+Stack /STK=12 /UG=Rn.8124 /LL=83533 /UG_GENE=Pdcd8 /DEF=Rattus norvegicus apoptosis-inducing factor mRNA, complete cds. /PROD=apoptosis-inducing factor /FL=gb:AF262320.1 gb:AB041723.1 AF262320 apoptosis-inducing factor, mitochondrion-associated 1 Aifm1 83533 NM_031356 0006309 // DNA fragmentation involved in apoptotic nuclear change // inferred from electronic annotation /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006919 // activation of caspase activity // inferred from sequence or structural similarity /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0051402 // neuron apoptosis // inferred from electronic annotation /// 0051402 // neuron apoptosis // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // inferred from sequence or structural similarity /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005829 // cytosol // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1370322_at D86220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D86220.1 /DB_XREF=gi:10640951 /FEA=FLmRNA /CNT=17 /TID=Rn.13308.1 /TIER=FL+Stack /STK=12 /UG=Rn.13308 /DEF=Rattus norvegicus mRNA for F52, complete cds. /PROD=F52 /FL=gb:D86220.1 D86220 serine/threonine kinase 16 Stk16 286927 NM_173142 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation 1370323_at M61142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M61142.1 /DB_XREF=gi:205373 /GEN=metalloendopeptidase /FEA=FLmRNA /CNT=14 /TID=Rn.9490.1 /TIER=FL+Stack /STK=12 /UG=Rn.9490 /LL=64517 /DEF=Rat metalloendopeptidase mRNA, complete cds. /PROD=metalloendopeptidase /FL=gb:M61142.1 M61142 thimet oligopeptidase 1 Thop1 64517 NM_172075 0006508 // proteolysis // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006518 // peptide metabolic process // inferred from electronic annotation /// 0006518 // peptide metabolic process // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0004222 // metalloendopeptidase activity // not recorded /// 0004222 // metalloendopeptidase activity // traceable author statement /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1370324_at AF120492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF120492.1 /DB_XREF=gi:4322309 /GEN=PINA5.1 /FEA=FLmRNA /CNT=12 /TID=Rn.10025.2 /TIER=FL+Stack /STK=12 /UG=Rn.10025 /LL=24218 /DEF=Rattus norvegicus night-specific ATPase (PINA5.1) mRNA, complete cds. /PROD=night-specific ATPase /FL=gb:AF120492.1 AF120492 ATPase, Cu++ transporting, beta polypeptide Atp7b 24218 NM_012511 0006200 // ATP catabolic process // not recorded /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // not recorded /// 0006878 // cellular copper ion homeostasis // not recorded /// 0006882 // cellular zinc ion homeostasis // not recorded /// 0007595 // lactation // inferred from expression pattern /// 0007595 // lactation // not recorded /// 0007623 // circadian rhythm // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0010043 // response to zinc ion // inferred from expression pattern /// 0015674 // di-, tri-valent inorganic cation transport // not recorded /// 0015677 // copper ion import // not recorded /// 0015680 // intracellular copper ion transport // not recorded /// 0030001 // metal ion transport // inferred from electronic annotation /// 0035434 // copper ion transmembrane transport // not recorded /// 0046688 // response to copper ion // inferred from expression pattern /// 0046688 // response to copper ion // not recorded /// 0048511 // rhythmic process // inferred from electronic annotation /// 0051208 // sequestering of calcium ion // not recorded /// 0051591 // response to cAMP // inferred from expression pattern /// 0060003 // copper ion export // not recorded 0005624 // membrane fraction // not recorded /// 0005770 // late endosome // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005802 // trans-Golgi network // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005923 // tight junction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0016323 // basolateral plasma membrane // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004008 // copper-exporting ATPase activity // inferred from electronic annotation /// 0004008 // copper-exporting ATPase activity // not recorded /// 0004008 // copper-exporting ATPase activity // traceable author statement /// 0005375 // copper ion transmembrane transporter activity // inferred from direct assay /// 0005507 // copper ion binding // inferred from direct assay /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005507 // copper ion binding // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008270 // zinc ion binding // inferred from direct assay /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0043682 // copper-transporting ATPase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046873 // metal ion transmembrane transporter activity // inferred from electronic annotation 1370325_at AF110267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF110267.1 /DB_XREF=gi:5901571 /FEA=FLmRNA /CNT=33 /TID=Rn.11512.1 /TIER=FL+Stack /STK=11 /UG=Rn.11512 /DEF=Rattus norvegicus golgi stacking protein homolog GRASP55 mRNA, complete cds. /PROD=golgi stacking protein homolog GRASP55 /FL=gb:AF110267.1 AF110267 golgi reassembly stacking protein 2 Gorasp2 113961 NM_001007720 0007030 // Golgi organization // inferred from direct assay 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005797 // Golgi medial cisterna // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation 1370326_at U36444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U36444.1 /DB_XREF=gi:1040966 /FEA=FLmRNA /CNT=31 /TID=Rn.16871.1 /TIER=FL+Stack /STK=11 /UG=Rn.16871 /LL=81741 /UG_GENE=Pctk1 /DEF=Rattus norvegicus PCTAIRE-1 protein kinase mRNA, alternatively spliced, complete cds. /PROD=PCTAIRE-1a protein kinase /FL=gb:U36444.1 U36444 PCTAIRE protein kinase 1 Pctk1 81741 NM_001004132 /// NM_031077 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1370327_at AF290194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF290194.1 /DB_XREF=gi:9964284 /FEA=FLmRNA /CNT=22 /TID=Rn.24747.1 /TIER=FL+Stack /STK=11 /UG=Rn.24747 /DEF=Rattus norvegicus hypertension-related calcium-regulated gene mRNA, complete cds. /PROD=unknown /FL=gb:AF290194.1 AF290194 COMM domain containing 5 Commd5 245974 NM_139108 0001558 // regulation of cell growth // non-traceable author statement /// 0007050 // cell cycle arrest // inferred from direct assay /// 0045595 // regulation of cell differentiation // non-traceable author statement 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370328_at AF245040 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF245040.1 /DB_XREF=gi:10303606 /FEA=FLmRNA /CNT=24 /TID=Rn.12516.1 /TIER=FL+Stack /STK=11 /UG=Rn.12516 /LL=171548 /UG_GENE=Dkk3 /DEF=Rattus norvegicus substrate binding subunit of type II 5-deiodinase D2p29 mRNA, complete cds. /PROD=substrate binding subunit of type II5-deiodinase D2p29 /FL=gb:AF245040.1 AF245040 dickkopf homolog 3 (Xenopus laevis) Dkk3 171548 NM_138519 0007275 // multicellular organismal development // inferred from electronic annotation /// 0010894 // negative regulation of steroid biosynthetic process // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030325 // adrenal gland development // not recorded /// 0032348 // negative regulation of aldosterone biosynthetic process // not recorded 0005576 // extracellular region // inferred from electronic annotation 0016564 // transcription repressor activity // not recorded 1370329_at U48219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U48219.1 /DB_XREF=gi:1200515 /FEA=FLmRNA /CNT=19 /TID=Rn.26060.1 /TIER=FL+Stack /STK=11 /UG=Rn.26060 /LL=171522 /UG_GENE=Cyp2d18 /DEF=Rattus norvegicus cytochrome P450 2D18 mRNA, complete cds. /PROD=cytochrome P450 2D18 /FL=gb:M22331.1 gb:U48220.1 gb:AB008425.1 gb:U48219.1 U48219 cytochrome P450, family 2, subfamily d, polypeptide 4 Cyp2d4 171522 NM_138515 0008202 // steroid metabolic process // not recorded /// 0009804 // coumarin metabolic process // not recorded /// 0009820 // alkaloid metabolic process // not recorded /// 0009822 // alkaloid catabolic process // not recorded /// 0009892 // negative regulation of metabolic process // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0016098 // monoterpenoid metabolic process // not recorded /// 0017144 // drug metabolic process // inferred from direct assay /// 0017144 // drug metabolic process // not recorded /// 0019369 // arachidonic acid metabolic process // inferred from direct assay /// 0033076 // isoquinoline alkaloid metabolic process // not recorded /// 0042417 // dopamine metabolic process // inferred from direct assay /// 0042737 // drug catabolic process // not recorded /// 0046483 // heterocycle metabolic process // not recorded /// 0051100 // negative regulation of binding // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded /// 0070989 // oxidative demethylation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from direct assay /// 0004497 // monooxygenase activity // not recorded /// 0004497 // monooxygenase activity // traceable author statement /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004509 // steroid 21-monooxygenase activity // inferred from mutant phenotype /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008144 // drug binding // not recorded /// 0008391 // arachidonic acid monooxygenase activity // inferred from direct assay /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0020037 // heme binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1370330_at AF026504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF026504.1 /DB_XREF=gi:2555182 /FEA=FLmRNA /CNT=14 /TID=Rn.10835.1 /TIER=FL+Stack /STK=11 /UG=Rn.10835 /DEF=Rattus norvegicus SPA-1 like protein p1294 mRNA, complete cds. /PROD=SPA-1 like protein p1294 /FL=gb:AF026504.1 AF026504 signal-induced proliferation-associated 1 like 1 Sipa1l1 246212 NM_139330 0031532 // actin cytoskeleton reorganization // inferred from direct assay /// 0032861 // activation of Rap GTPase activity // inferred from direct assay /// 0048167 // regulation of synaptic plasticity // inferred from mutant phenotype /// 0048814 // regulation of dendrite morphogenesis // inferred from mutant phenotype /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation /// 0061001 // regulation of dendritic spine morphogenesis // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005096 // GTPase activator activity // traceable author statement /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from direct assay 1370331_at AF347936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF347936.1 /DB_XREF=gi:13549074 /FEA=FLmRNA /CNT=12 /TID=Rn.29849.1 /TIER=FL+Stack /STK=11 /UG=Rn.29849 /DEF=Rattus norvegicus interleukin 11 receptor alpha chain precursor, mRNA, complete cds. /PROD=interleukin 11 receptor alpha chain precursor /FL=gb:AF347936.1 AF347936 interleukin 11 receptor, alpha chain 1 Il11ra1 245983 NM_139116 0001779 // natural killer cell differentiation // not recorded /// 0001890 // placenta development // not recorded /// 0007566 // embryo implantation // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0046697 // decidualization // not recorded /// 0060135 // maternal process involved in female pregnancy // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004921 // interleukin-11 receptor activity // not recorded /// 0004921 // interleukin-11 receptor activity // traceable author statement /// 0019970 // interleukin-11 binding // not recorded /// 0019970 // interleukin-11 binding // traceable author statement /// 0046982 // protein heterodimerization activity // traceable author statement 1370332_at AF159356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF159356.1 /DB_XREF=gi:5524666 /GEN=Munc13-4 /FEA=FLmRNA /CNT=11 /TID=Rn.22086.1 /TIER=FL+Stack /STK=11 /UG=Rn.22086 /DEF=Rattus norvegicus Munc13-4 protein (Munc13-4) mRNA, complete cds. /PROD=Munc13-4 protein /FL=gb:AF159356.1 AF159356 unc-13 homolog D (C. elegans) Unc13d 192177 NM_138844 0002432 // granuloma formation // inferred from electronic annotation /// 0002432 // granuloma formation // not recorded /// 0002467 // germinal center formation // inferred from electronic annotation /// 0002467 // germinal center formation // not recorded /// 0006887 // exocytosis // inferred from electronic annotation /// 0006909 // phagocytosis // inferred from electronic annotation /// 0006909 // phagocytosis // not recorded /// 0043304 // regulation of mast cell degranulation // inferred from electronic annotation /// 0043304 // regulation of mast cell degranulation // not recorded /// 0043320 // natural killer cell degranulation // inferred from electronic annotation /// 0043320 // natural killer cell degranulation // not recorded /// 0045921 // positive regulation of exocytosis // inferred from electronic annotation /// 0045921 // positive regulation of exocytosis // not recorded /// 0046903 // secretion // inferred from expression pattern /// 0051607 // defense response to virus // inferred from electronic annotation /// 0051607 // defense response to virus // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from electronic annotation /// 0070382 // exocytic vesicle // inferred from electronic annotation /// 0070382 // exocytic vesicle // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370333_a_at M15481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M15481.1 /DB_XREF=gi:204753 /FEA=FLmRNA /CNT=23 /TID=Rn.6282.1 /TIER=FL+Stack /STK=10 /UG=Rn.6282 /UG_TITLE=Rat mRNA for insulin-like growth factor1 (IGF-1) /DEF=Rat insulin-like growth factor I (IGF-I) mRNA, complete cds. /FL=gb:M15481.1 M15481 insulin-like growth factor 1 Igf1 24482 NM_001082477 /// NM_001082478 /// NM_001082479 /// NM_178866 0001649 // osteoblast differentiation // not recorded /// 0001974 // blood vessel remodeling // not recorded /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from mutant phenotype /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from expression pattern /// 0007613 // memory // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0010001 // glial cell differentiation // not recorded /// 0010001 // glial cell differentiation // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from expression pattern /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014823 // response to activity // inferred from expression pattern /// 0014834 // satellite cell maintenance involved in skeletal muscle regeneration // not recorded /// 0014834 // satellite cell maintenance involved in skeletal muscle regeneration // inferred from electronic annotation /// 0014896 // muscle hypertrophy // not recorded /// 0014896 // muscle hypertrophy // inferred from electronic annotation /// 0014904 // myotube cell development // not recorded /// 0014904 // myotube cell development // inferred from electronic annotation /// 0014911 // positive regulation of smooth muscle cell migration // not recorded /// 0014911 // positive regulation of smooth muscle cell migration // inferred from electronic annotation /// 0021940 // positive regulation of granule cell precursor proliferation // not recorded /// 0021940 // positive regulation of granule cell precursor proliferation // inferred from electronic annotation /// 0030104 // water homeostasis // not recorded /// 0030104 // water homeostasis // inferred from electronic annotation /// 0030166 // proteoglycan biosynthetic process // not recorded /// 0030307 // positive regulation of cell growth // inferred from direct assay /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030879 // mammary gland development // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0031017 // exocrine pancreas development // not recorded /// 0031017 // exocrine pancreas development // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032878 // regulation of establishment or maintenance of cell polarity // not recorded /// 0032878 // regulation of establishment or maintenance of cell polarity // inferred from electronic annotation /// 0034392 // negative regulation of smooth muscle cell apoptosis // not recorded /// 0034392 // negative regulation of smooth muscle cell apoptosis // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from direct assay /// 0042523 // positive regulation of tyrosine phosphorylation of Stat5 protein // not recorded /// 0042523 // positive regulation of tyrosine phosphorylation of Stat5 protein // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0043568 // positive regulation of insulin-like growth factor receptor signaling pathway // not recorded /// 0043568 // positive regulation of insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0045445 // myoblast differentiation // not recorded /// 0045445 // myoblast differentiation // inferred from electronic annotation /// 0045600 // positive regulation of fat cell differentiation // inferred from direct assay /// 0045669 // positive regulation of osteoblast differentiation // inferred from direct assay /// 0045740 // positive regulation of DNA replication // not recorded /// 0045768 // positive regulation of anti-apoptosis // inferred from direct assay /// 0045821 // positive regulation of glycolysis // not recorded /// 0045821 // positive regulation of glycolysis // inferred from electronic annotation /// 0045840 // positive regulation of mitosis // not recorded /// 0045840 // positive regulation of mitosis // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from direct assay /// 0048009 // insulin-like growth factor receptor signaling pathway // not recorded /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // not recorded /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048286 // lung alveolus development // not recorded /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048468 // cell development // not recorded /// 0048468 // cell development // inferred from electronic annotation /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0048661 // positive regulation of smooth muscle cell proliferation // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0050650 // chondroitin sulfate proteoglycan biosynthetic process // not recorded /// 0050650 // chondroitin sulfate proteoglycan biosynthetic process // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // not recorded /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051450 // myoblast proliferation // not recorded /// 0051450 // myoblast proliferation // inferred from electronic annotation /// 0051929 // positive regulation of calcium ion transport via voltage-gated calcium channel activity // inferred from direct assay /// 0060426 // lung vasculature development // not recorded /// 0060426 // lung vasculature development // inferred from electronic annotation /// 0060463 // lung lobe morphogenesis // not recorded /// 0060463 // lung lobe morphogenesis // inferred from electronic annotation /// 0060509 // Type I pneumocyte differentiation // not recorded /// 0060509 // Type I pneumocyte differentiation // inferred from electronic annotation /// 0060510 // Type II pneumocyte differentiation // not recorded /// 0060510 // Type II pneumocyte differentiation // inferred from electronic annotation /// 0060527 // prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis // not recorded /// 0060527 // prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis // inferred from electronic annotation /// 0060736 // prostate gland growth // not recorded /// 0060736 // prostate gland growth // inferred from electronic annotation /// 0060740 // prostate gland epithelium morphogenesis // not recorded /// 0060740 // prostate gland epithelium morphogenesis // inferred from electronic annotation /// 0060741 // prostate gland stromal morphogenesis // not recorded /// 0060741 // prostate gland stromal morphogenesis // inferred from electronic annotation /// 0060766 // negative regulation of androgen receptor signaling pathway // not recorded /// 0060766 // negative regulation of androgen receptor signaling pathway // inferred from electronic annotation /// 0070373 // negative regulation of ERK1 and ERK2 cascade // not recorded /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005614 // interstitial matrix // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0031093 // platelet alpha granule lumen // not recorded 0005158 // insulin receptor binding // not recorded /// 0005158 // insulin receptor binding // inferred from electronic annotation /// 0005159 // insulin-like growth factor receptor binding // inferred from direct assay /// 0005159 // insulin-like growth factor receptor binding // not recorded /// 0005159 // insulin-like growth factor receptor binding // inferred from electronic annotation /// 0005179 // hormone activity // inferred from direct assay /// 0005179 // hormone activity // inferred from electronic annotation /// 0005179 // hormone activity // not recorded /// 0005496 // steroid binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // traceable author statement 1370334_at AF081582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF081582.1 /DB_XREF=gi:6650280 /GEN=Kpl1 /FEA=FLmRNA /CNT=17 /TID=Rn.8415.1 /TIER=FL+Stack /STK=10 /UG=Rn.8415 /LL=64471 /DEF=Rattus norvegicus KPL1 (Kpl1) mRNA, complete cds. /PROD=KPL1 /FL=gb:AF118562.1 gb:AF081582.1 AF081582 pleckstrin homology domain containing, family B (evectins) member 1 Plekhb1 64471 NM_172033 0045595 // regulation of cell differentiation // inferred from expression pattern 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1370335_at AF236130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF236130.1 /DB_XREF=gi:15277524 /FEA=FLmRNA /CNT=14 /TID=Rn.14323.1 /TIER=FL+Stack /STK=10 /UG=Rn.14323 /DEF=Rattus norvegicus DOC2DAB2 interactive protein mRNA, complete cds. /PROD=DOC2DAB2 interactive protein /FL=gb:AF236130.1 AF236130 DAB2 interacting protein Dab2ip 192126 NM_138710 0007165 // signal transduction // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0046580 // negative regulation of Ras protein signal transduction // inferred from direct assay /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005099 // Ras GTPase activator activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction 1370336_at AY081218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY081218.1 /DB_XREF=gi:19697887 /FEA=FLmRNA /CNT=12 /TID=Rn.15599.1 /TIER=FL+Stack /STK=10 /UG=Rn.15599 /DEF=Rattus norvegicus pregnancy-induced growth inhibitor OKL38 mRNA, complete cds. /PROD=pregnancy-induced growth inhibitor OKL38 /FL=gb:AY081218.1 AY081218 oxidative stress induced growth inhibitor 1 Osgin1 171493 NM_138504 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded 1370337_at AF133731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF133731.2 /DB_XREF=gi:5670339 /GEN=CTCF /FEA=FLmRNA /CNT=15 /TID=Rn.18612.1 /TIER=FL+Stack /STK=10 /UG=Rn.18612 /LL=83726 /DEF=Rattus norvegicus 11-zinc finger protein (CTCF) mRNA, complete cds. /PROD=11-zinc finger protein /FL=gb:AF133731.2 AF133731 CCCTC-binding factor (zinc finger protein) Ctcf 83726 NM_031824 0006306 // DNA methylation // not recorded /// 0006306 // DNA methylation // inferred from electronic annotation /// 0006349 // regulation of gene expression by genetic imprinting // inferred from electronic annotation /// 0006349 // regulation of gene expression by genetic imprinting // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0010216 // maintenance of DNA methylation // inferred from electronic annotation /// 0010216 // maintenance of DNA methylation // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0010629 // negative regulation of gene expression // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016584 // nucleosome positioning // inferred from electronic annotation /// 0016584 // nucleosome positioning // not recorded /// 0031060 // regulation of histone methylation // not recorded /// 0035065 // regulation of histone acetylation // not recorded /// 0040029 // regulation of gene expression, epigenetic // not recorded /// 0040029 // regulation of gene expression, epigenetic // inferred from electronic annotation /// 0040030 // regulation of molecular function, epigenetic // inferred from electronic annotation /// 0040030 // regulation of molecular function, epigenetic // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000775 // chromosome, centromeric region // not recorded /// 0000793 // condensed chromosome // inferred from electronic annotation /// 0000793 // condensed chromosome // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043035 // chromatin insulator sequence binding // inferred from electronic annotation /// 0043035 // chromatin insulator sequence binding // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370338_at AF387884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF387884.1 /DB_XREF=gi:14626732 /FEA=FLmRNA /CNT=10 /TID=Rn.81032.1 /TIER=FL+Stack /STK=10 /UG=Rn.81032 /DEF=Rattus norvegicus strain LeR histamine receptor H1 mRNA, complete cds. /PROD=histamine receptor H1 /FL=gb:AF387883.1 gb:AF387887.1 gb:AF387882.1 gb:AF387886.1 gb:AF387889.1 gb:AF387881.1 gb:AF387885.1 gb:AF387880.1 gb:AF387888.1 gb:AF387884.1 AF387884 histamine receptor H 1 Hrh1 24448 NM_017018 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007199 // G-protein signaling, coupled to cGMP nucleotide second messenger // traceable author statement /// 0007268 // synaptic transmission // inferred from direct assay /// 0009629 // response to gravity // inferred from expression pattern /// 0010894 // negative regulation of steroid biosynthetic process // inferred from mutant phenotype /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from direct assay /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004969 // histamine receptor activity // traceable author statement /// 0004969 // histamine receptor activity // inferred from electronic annotation /// 0051381 // histamine binding // inferred from mutant phenotype 1370339_at L24775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L24775.1 /DB_XREF=gi:438877 /GEN=TPM-gamma /FEA=FLmRNA /CNT=32 /TID=Rn.24727.1 /TIER=FL+Stack /STK=9 /UG=Rn.24727 /DEF=Rattus norvegicus tropomyosin non-muscle isoform NM1 (TPM-gamma) mRNA, complete cds. /PROD=tropomyosin /FL=gb:L24775.1 L24775 tropomyosin 3, gamma Tpm3 117557 NM_057208 /// NM_173111 0007420 // brain development // inferred from expression pattern 0002102 // podosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1370340_x_at BI295970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295970 /DB_XREF=gi:14959948 /DB_XREF=UI-R-DK0-cfc-h-06-0-UI.s1 /CLONE=UI-R-DK0-cfc-h-06-0-UI /FEA=FLmRNA /CNT=32 /TID=Rn.24727.1 /TIER=Stack /STK=11 /UG=Rn.24727 /UG_TITLE=R.norvegicus mRNA for tropomyosin isoform 6 /FL=gb:L24775.1 BI295970 tropomyosin 3, gamma Tpm3 117557 NM_057208 /// NM_173111 0007420 // brain development // inferred from expression pattern 0002102 // podosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1370341_at AF019973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF019973.1 /DB_XREF=gi:2465395 /GEN=NSE /FEA=FLmRNA /CNT=28 /TID=Rn.10828.1 /TIER=FL+Stack /STK=9 /UG=Rn.10828 /DEF=Rattus norvegicus neuron-specific enolase (NSE) mRNA, complete cds. /PROD=neuron-specific enolase /FL=gb:AF019973.1 gb:M11931.1 AF019973 enolase 2, gamma, neuronal Eno2 24334 NM_139325 0006094 // gluconeogenesis // inferred from direct assay /// 0006096 // glycolysis // inferred from direct assay /// 0006096 // glycolysis // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern 0000015 // phosphopyruvate hydratase complex // inferred from electronic annotation /// 0001917 // photoreceptor inner segment // inferred from electronic annotation /// 0001917 // photoreceptor inner segment // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0043025 // neuronal cell body // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043204 // perikaryon // inferred from electronic annotation /// 0043204 // perikaryon // not recorded 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004634 // phosphopyruvate hydratase activity // inferred from direct assay /// 0004634 // phosphopyruvate hydratase activity // inferred from electronic annotation /// 0004634 // phosphopyruvate hydratase activity // traceable author statement /// 0016829 // lyase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay 1370342_at AF385402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF385402.1 /DB_XREF=gi:19716295 /FEA=FLmRNA /CNT=17 /TID=Rn.74262.1 /TIER=FL+Stack /STK=9 /UG=Rn.74262 /DEF=Rattus norvegicus tandem pore domain potassium channel TREK-1 mRNA, complete cds. /PROD=tandem pore domain potassium channel TREK-1 /FL=gb:AF325671.1 gb:AF385402.1 AF385402 potassium channel, subfamily K, member 2 Kcnk2 170899 NM_172041 /// NM_172042 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0034765 // regulation of ion transmembrane transport // not recorded 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // not recorded /// 0005267 // potassium channel activity // inferred from electronic annotation 1370343_at AF277899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF277899.1 /DB_XREF=gi:12483897 /FEA=FLmRNA /CNT=13 /TID=Rn.24921.1 /TIER=FL+Stack /STK=9 /UG=Rn.24921 /DEF=Rattus norvegicus adapter protein ATH-55 mRNA, complete cds. /PROD=adapter protein ATH-55 /FL=gb:AF277899.1 AF277899 XPA binding protein 2 Xab2 245976 NM_139109 0001824 // blastocyst development // inferred from electronic annotation /// 0001824 // blastocyst development // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006283 // transcription-coupled nucleotide-excision repair // not recorded /// 0006283 // transcription-coupled nucleotide-excision repair // inferred from sequence or structural similarity /// 0006283 // transcription-coupled nucleotide-excision repair // inferred from electronic annotation /// 0006350 // transcription // not recorded /// 0006350 // transcription // inferred from sequence or structural similarity /// 0006350 // transcription // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370344_at AF077354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF077354.1 /DB_XREF=gi:3360520 /GEN=irp94 /FEA=FLmRNA /CNT=20 /TID=Rn.29989.1 /TIER=FL+Stack /STK=9 /UG=Rn.29989 /DEF=Rattus norvegicus ischemia responsive 94 kDa protein (irp94) mRNA, complete cds. /PROD=ischemia responsive 94 kDa protein /FL=gb:AF077354.1 AF077354 heat shock protein 4 Hspa4 266759 NM_153629 0006950 // response to stress // inferred from electronic annotation /// 0009408 // response to heat // inferred from direct assay /// 0034619 // cellular chaperone-mediated protein complex assembly // inferred from electronic annotation /// 0034619 // cellular chaperone-mediated protein complex assembly // not recorded /// 0070096 // mitochondrial outer membrane translocase complex assembly // inferred from electronic annotation /// 0070096 // mitochondrial outer membrane translocase complex assembly // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1370345_at L11995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L11995.1 /DB_XREF=gi:2828516 /FEA=FLmRNA /CNT=16 /TID=Rn.9232.1 /TIER=FL+Stack /STK=9 /UG=Rn.9232 /LL=25203 /UG_GENE=Ccnb1 /DEF=Rattus norvegicus cyclin B mRNA, complete cds. /PROD=cyclin B /FL=gb:L11995.1 L11995 cyclin B1 Ccnb1 25203 NM_171991 0000236 // mitotic prometaphase // inferred from electronic annotation /// 0000236 // mitotic prometaphase // not recorded /// 0000278 // mitotic cell cycle // inferred from expression pattern /// 0001556 // oocyte maturation // inferred from mutant phenotype /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001933 // negative regulation of protein phosphorylation // inferred from mutant phenotype /// 0006461 // protein complex assembly // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007080 // mitotic metaphase plate congression // inferred from electronic annotation /// 0007080 // mitotic metaphase plate congression // not recorded /// 0007283 // spermatogenesis // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009636 // response to toxin // inferred from expression pattern /// 0010629 // negative regulation of gene expression // inferred from mutant phenotype /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0031442 // positive regulation of mRNA 3'-end processing // inferred from mutant phenotype /// 0033129 // positive regulation of histone phosphorylation // inferred from mutant phenotype /// 0042246 // tissue regeneration // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043148 // mitotic spindle stabilization // inferred from electronic annotation /// 0043148 // mitotic spindle stabilization // not recorded /// 0045931 // positive regulation of mitotic cell cycle // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // not recorded /// 0046680 // response to DDT // inferred from expression pattern /// 0048565 // digestive tract development // inferred from expression pattern /// 0051301 // cell division // inferred from electronic annotation /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051726 // regulation of cell cycle // inferred from expression pattern /// 0051987 // positive regulation of attachment of spindle microtubules to kinetochore // inferred from electronic annotation /// 0051987 // positive regulation of attachment of spindle microtubules to kinetochore // not recorded /// 0055015 // ventricular cardiac muscle cell development // inferred from expression pattern /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from direct assay /// 0060623 // regulation of chromosome condensation // inferred from mutant phenotype /// 0071174 // mitotic cell cycle spindle checkpoint // inferred from electronic annotation /// 0071174 // mitotic cell cycle spindle checkpoint // not recorded /// 0071283 // cellular response to iron(III) ion // inferred from expression pattern /// 0071398 // cellular response to fatty acid // inferred from expression pattern /// 0071407 // cellular response to organic cyclic substance // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from expression pattern 0000922 // spindle pole // inferred from electronic annotation /// 0000922 // spindle pole // not recorded /// 0000942 // condensed nuclear chromosome outer kinetochore // inferred from electronic annotation /// 0000942 // condensed nuclear chromosome outer kinetochore // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction /// 0035173 // histone kinase activity // inferred from direct assay 1370346_at X64589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X64589.1 /DB_XREF=gi:313807 /FEA=FLmRNA /CNT=16 /TID=Rn.9232.1 /TIER=ConsEnd /STK=0 /UG=Rn.9232 /LL=25203 /UG_GENE=Ccnb1 /DEF=R.norvegicus mRNA for cyclin B. /PROD=cyclin B /FL=gb:L11995.1 X64589 cyclin B1 Ccnb1 25203 NM_171991 0000236 // mitotic prometaphase // inferred from electronic annotation /// 0000236 // mitotic prometaphase // not recorded /// 0000278 // mitotic cell cycle // inferred from expression pattern /// 0001556 // oocyte maturation // inferred from mutant phenotype /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001933 // negative regulation of protein phosphorylation // inferred from mutant phenotype /// 0006461 // protein complex assembly // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007080 // mitotic metaphase plate congression // inferred from electronic annotation /// 0007080 // mitotic metaphase plate congression // not recorded /// 0007283 // spermatogenesis // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009636 // response to toxin // inferred from expression pattern /// 0010629 // negative regulation of gene expression // inferred from mutant phenotype /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0031442 // positive regulation of mRNA 3'-end processing // inferred from mutant phenotype /// 0033129 // positive regulation of histone phosphorylation // inferred from mutant phenotype /// 0042246 // tissue regeneration // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043148 // mitotic spindle stabilization // inferred from electronic annotation /// 0043148 // mitotic spindle stabilization // not recorded /// 0045931 // positive regulation of mitotic cell cycle // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // not recorded /// 0046680 // response to DDT // inferred from expression pattern /// 0048565 // digestive tract development // inferred from expression pattern /// 0051301 // cell division // inferred from electronic annotation /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051726 // regulation of cell cycle // inferred from expression pattern /// 0051987 // positive regulation of attachment of spindle microtubules to kinetochore // inferred from electronic annotation /// 0051987 // positive regulation of attachment of spindle microtubules to kinetochore // not recorded /// 0055015 // ventricular cardiac muscle cell development // inferred from expression pattern /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from direct assay /// 0060623 // regulation of chromosome condensation // inferred from mutant phenotype /// 0071174 // mitotic cell cycle spindle checkpoint // inferred from electronic annotation /// 0071174 // mitotic cell cycle spindle checkpoint // not recorded /// 0071283 // cellular response to iron(III) ion // inferred from expression pattern /// 0071398 // cellular response to fatty acid // inferred from expression pattern /// 0071407 // cellular response to organic cyclic substance // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from expression pattern 0000922 // spindle pole // inferred from electronic annotation /// 0000922 // spindle pole // not recorded /// 0000942 // condensed nuclear chromosome outer kinetochore // inferred from electronic annotation /// 0000942 // condensed nuclear chromosome outer kinetochore // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction /// 0035173 // histone kinase activity // inferred from direct assay 1370347_at AF095585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF095585.1 /DB_XREF=gi:4235388 /FEA=FLmRNA /CNT=17 /TID=Rn.7274.1 /TIER=FL+Stack /STK=9 /UG=Rn.7274 /DEF=Rattus norvegicus LIM-domain protein LMP-1 mRNA, complete cds. /PROD=LIM-domain protein LMP-1 /FL=gb:AF095585.1 AF095585 PDZ and LIM domain 7 Pdlim7 286908 NM_173125 0001503 // ossification // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // inferred from direct assay 0001725 // stress fiber // inferred from electronic annotation /// 0001725 // stress fiber // not recorded /// 0001726 // ruffle // inferred from electronic annotation /// 0001726 // ruffle // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030054 // cell junction // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370348_at U72660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U72660.1 /DB_XREF=gi:1644365 /FEA=FLmRNA /CNT=14 /TID=Rn.11245.1 /TIER=FL+Stack /STK=9 /UG=Rn.11245 /LL=25338 /UG_GENE=Ninj1 /DEF=Rattus norvegicus ninjurin1 mRNA, complete cds. /PROD=ninjurin1 /FL=gb:U72660.1 U72660 ninjurin 1 Ninj1 25338 NM_012867 0007155 // cell adhesion // inferred from electronic annotation /// 0042246 // tissue regeneration // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1370349_a_at AF368860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF368860.1 /DB_XREF=gi:14388972 /FEA=FLmRNA /CNT=10 /TID=Rn.1658.3 /TIER=FL+Stack /STK=9 /UG=Rn.1658 /LL=25392 /UG_GENE=Atpi /DEF=Rattus norvegicus 3 non-translated beta-F1-ATPase mRNA-binding protein mRNA, complete cds. /PROD=3 non-translated beta-F1-ATPase mRNA-bindingprotein /FL=gb:AF368860.1 AF368860 similar to Urinary protein 3 precursor (RUP-3) /// urinary protein 2 LOC680367 /// Rup2 619560 /// 680367 NM_001034950 /// XM_001056871 0005576 // extracellular region // inferred from electronic annotation 1370350_x_at AF368860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF368860.1 /DB_XREF=gi:14388972 /FEA=FLmRNA /CNT=10 /TID=Rn.1658.3 /TIER=FL+Stack /STK=9 /UG=Rn.1658 /LL=25392 /UG_GENE=Atpi /DEF=Rattus norvegicus 3 non-translated beta-F1-ATPase mRNA-binding protein mRNA, complete cds. /PROD=3 non-translated beta-F1-ATPase mRNA-bindingprotein /FL=gb:AF368860.1 AF368860 similar to Urinary protein 3 precursor (RUP-3) /// similar to Urinary protein 2 precursor (RUP-2) LOC680367 /// LOC680406 680367 /// 680406 XM_001056871 /// XM_001057058 /// XM_002727314 0005576 // extracellular region // inferred from electronic annotation 1370351_at AB030644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB030644.1 /DB_XREF=gi:5689374 /GEN=Trap /FEA=FLmRNA /CNT=16 /TID=Rn.16138.1 /TIER=FL+Stack /STK=9 /UG=Rn.16138 /LL=85425 /DEF=Rattus norvegicus Trap mRNA for tudor repeat associator with PCTAIRE 2, complete cds. /PROD=tudor repeat associator with PCTAIRE 2 /FL=gb:AB030644.1 AB030644 tudor domain containing 7 Tdrd7 85425 NM_138871 0007281 // germ cell development // inferred from electronic annotation /// 0007281 // germ cell development // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0033391 // chromatoid body // inferred from electronic annotation /// 0033391 // chromatoid body // not recorded /// 0043186 // P granule // inferred from electronic annotation /// 0043186 // P granule // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from direct assay 1370352_at AB023630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB023630.1 /DB_XREF=gi:14331128 /GEN=CESrRL1 /FEA=FLmRNA /CNT=9 /TID=Rn.82692.2 /TIER=FL+Stack /STK=9 /UG=Rn.82692 /LL=29225 /DEF=Rattus norvegicus CESrRL1 mRNA for carboxylesterase RL1, complete cds. /PROD=carboxylesterase RL1 /FL=gb:U10698.1 gb:U10697.1 gb:AB023630.1 AB023630 carboxylesterase-like 1 /// carboxylesterase ES-4 Cesl1 /// LOC100125372 100125372 /// 501232 NM_001024365 /// NM_001103359 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0004091 // carboxylesterase activity // traceable author statement /// 0016290 // palmitoyl-CoA hydrolase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation 1370353_at AF223951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF223951.1 /DB_XREF=gi:6760456 /GEN=Tim22 /FEA=FLmRNA /CNT=20 /TID=Rn.18509.1 /TIER=FL+Stack /STK=8 /UG=Rn.18509 /LL=79463 /DEF=Rattus norvegicus TIM22 preprotein translocase (Tim22) mRNA, complete cds; nuclear gene for mitochondrial product. /PROD=TIM22 preprotein translocase /FL=gb:AF223951.1 AF223951 translocase of inner mitochondrial membrane 22 homolog (yeast) Timm22 79463 XM_001080619 /// XM_340856 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation 1370354_at AB019366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB019366.1 /DB_XREF=gi:6518479 /GEN=Parg /FEA=FLmRNA /CNT=12 /TID=Rn.13634.1 /TIER=FL+Stack /STK=8 /UG=Rn.13634 /LL=83507 /DEF=Rattus norvegicus Parg mRNA for poly(ADP-ribose) glycohydrolase, complete cds. /PROD=poly(ADP-ribose) glycohydrolase /FL=gb:AB019366.1 AB019366 poly (ADP-ribose) glycohydrolase Parg 83507 NM_031339 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0008152 // metabolic process // not recorded /// 0016045 // detection of bacterium // inferred from electronic annotation /// 0016045 // detection of bacterium // not recorded /// 0045739 // positive regulation of DNA repair // inferred from mutant phenotype 0000785 // chromatin // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003682 // chromatin binding // inferred from direct assay /// 0004649 // poly(ADP-ribose) glycohydrolase activity // inferred from direct assay /// 0004649 // poly(ADP-ribose) glycohydrolase activity // not recorded /// 0004649 // poly(ADP-ribose) glycohydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1370355_at J02585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J02585.1 /DB_XREF=gi:206859 /FEA=FLmRNA /CNT=16 /TID=Rn.1023.1 /TIER=FL+Stack /STK=8 /UG=Rn.1023 /UG_TITLE=Rat liver stearyl-CoA desaturase mRNA, complete cds /DEF=Rat liver stearyl-CoA desaturase mRNA, complete cds. /FL=gb:J02585.1 J02585 stearoyl-Coenzyme A desaturase 1 Scd1 246074 NM_139192 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // not recorded /// 0006633 // fatty acid biosynthetic process // traceable author statement /// 0008610 // lipid biosynthetic process // inferred from expression pattern /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0034435 // cholesterol esterification // not recorded /// 0044130 // negative regulation of growth of symbiont in host // not recorded /// 0050830 // defense response to Gram-positive bacterium // not recorded /// 0050872 // white fat cell differentiation // not recorded /// 0050873 // brown fat cell differentiation // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // traceable author statement 0004768 // stearoyl-CoA 9-desaturase activity // inferred from direct assay /// 0004768 // stearoyl-CoA 9-desaturase activity // inferred from electronic annotation /// 0004768 // stearoyl-CoA 9-desaturase activity // traceable author statement /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016717 // oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water // inferred from electronic annotation 1370356_at D83948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D83948.1 /DB_XREF=gi:1865639 /FEA=FLmRNA /CNT=13 /TID=Rn.8822.1 /TIER=FL+Stack /STK=8 /UG=Rn.8822 /DEF=Rat adult liver mRNA for S1-1 protein, complete cds. /PROD=S1-1 protein /FL=gb:D83948.1 D83948 RNA binding motif protein 10 Rbm10 64510 NM_152861 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016585 // chromatin remodeling complex // not recorded /// 0016585 // chromatin remodeling complex // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370357_at Y16774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y16774.1 /DB_XREF=gi:2951685 /GEN=Dri 27ZnT4 /FEA=FLmRNA /CNT=12 /TID=Rn.8391.1 /TIER=FL+Stack /STK=8 /UG=Rn.8391 /LL=64469 /UG_TITLE=Dri 27ZnT4 protein /DEF=Rattus norvegicus mRNA for Dri 27ZnT4 protein, complete CDS. /FL=gb:Y16774.1 Y16774 solute carrier family 30 (zinc transporter), member 4 Slc30a4 64469 NM_172066 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006829 // zinc ion transport // inferred from expression pattern /// 0006829 // zinc ion transport // inferred from electronic annotation /// 0007595 // lactation // inferred from expression pattern /// 0009636 // response to toxin // inferred from electronic annotation /// 0009636 // response to toxin // not recorded /// 0010043 // response to zinc ion // inferred from expression pattern /// 0033189 // response to vitamin A // inferred from expression pattern /// 0055069 // zinc ion homeostasis // inferred from electronic annotation /// 0055069 // zinc ion homeostasis // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0061088 // regulation of sequestering of zinc ion // inferred from electronic annotation /// 0061088 // regulation of sequestering of zinc ion // not recorded 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0044444 // cytoplasmic part // not recorded /// 0044444 // cytoplasmic part // inferred from electronic annotation 0005385 // zinc ion transmembrane transporter activity // inferred from direct assay /// 0008324 // cation transmembrane transporter activity // inferred from electronic annotation 1370358_at AB018253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB018253.1 /DB_XREF=gi:4586962 /FEA=FLmRNA /CNT=9 /TID=Rn.24484.1 /TIER=FL+Stack /STK=8 /UG=Rn.24484 /DEF=Rattus norvegicus mRNA for voltage-gated ca channel, complete cds. /PROD=voltage-gated ca channel /FL=gb:AB018253.1 AB018253 two pore segment channel 1 Tpcn1 246215 NM_139332 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation 1370359_at AB057450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB057450.1 /DB_XREF=gi:13374187 /GEN=Amy1 /FEA=FLmRNA /CNT=9 /TID=Rn.67070.2 /TIER=FL+Stack /STK=8 /UG=Rn.67070 /LL=24203 /DEF=Rattus norvegicus Amy1 mRNA for alpha-amylase, complete cds. /PROD=alpha-amylase /FL=gb:AB057450.1 AB057450 amylase, alpha 1A (salivary) Amy1a 24203 NM_001010970 0005975 // carbohydrate metabolic process // inferred from expression pattern /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004556 // alpha-amylase activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0016160 // amylase activity // not recorded /// 0016160 // amylase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation 1370360_at AF146738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF146738.1 /DB_XREF=gi:5823145 /FEA=FLmRNA /CNT=14 /TID=Rn.22281.1 /TIER=FL+Stack /STK=8 /UG=Rn.22281 /DEF=Rattus norvegicus testis specific protein mRNA, complete cds. /PROD=testis specific protein /FL=gb:AF146738.1 AF146738 similar to RIKEN cDNA 1500031L02 RGD621352 192229 NM_138865 1370361_at U66470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U66470.1 /DB_XREF=gi:1724074 /FEA=FLmRNA /CNT=11 /TID=Rn.31842.1 /TIER=FL+Stack /STK=8 /UG=Rn.31842 /DEF=Rattus norvegicus cell growth regulator rCGR11 mRNA, complete cds. /PROD=cell growth regulator rCGR11 /FL=gb:U66470.1 U66470 cell growth regulator with EF hand domain 1 Cgref1 245918 NM_139087 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1370362_at D45414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D45414.1 /DB_XREF=gi:644893 /FEA=FLmRNA /CNT=133 /TID=Rn.11097.1 /TIER=FL+Stack /STK=7 /UG=Rn.11097 /LL=116660 /UG_GENE=Ptprn /DEF=Rat mRNA for brain-enriched membrane-associated protein tyrosine phosphatase (BEM)-3, complete cds. /PROD=brain-enriched membrane-associated proteintyrosine phosphatase (BEM)-3 /FL=gb:D45414.1 D45414 protein tyrosine phosphatase, receptor type, N Ptprn 116660 NM_053881 0000302 // response to reactive oxygen species // not recorded /// 0000302 // response to reactive oxygen species // inferred from sequence or structural similarity /// 0000302 // response to reactive oxygen species // inferred from electronic annotation /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from direct assay /// 0019932 // second-messenger-mediated signaling // traceable author statement /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern 0005624 // membrane fraction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0051020 // GTPase binding // inferred from physical interaction 1370363_at L46791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L46791.1 /DB_XREF=gi:1162963 /FEA=FLmRNA /CNT=16 /TID=Rn.34885.1 /TIER=FL+Stack /STK=7 /UG=Rn.34885 /LL=113902 /UG_GENE=Ces3 /DEF=Rattus norvegicus cholesterol esterase mRNA, complete cds. /PROD=cholesterol esterase /FL=gb:L81144.1 gb:L46791.1 L46791 carboxylesterase 3 Ces3 113902 NM_133295 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // non-traceable author statement /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005792 // microsome // traceable author statement 0004091 // carboxylesterase activity // inferred from mutant phenotype /// 0004091 // carboxylesterase activity // traceable author statement /// 0004091 // carboxylesterase activity // inferred from direct assay /// 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030339 // fatty-acyl-ethyl-ester synthase activity // inferred from electronic annotation 1370364_at U35776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U35776.1 /DB_XREF=gi:1130493 /FEA=FLmRNA /CNT=12 /TID=Rn.11219.1 /TIER=FL+Stack /STK=7 /UG=Rn.11219 /DEF=Rattus norvegicus ADP-ribosylation factor-directed GTPase activating protein mRNA, complete cds. /PROD=ADP-ribosylation factor 1-directed GTPaseactivating protein /FL=gb:U35776.1 U35776 ADP-ribosylation factor GTPase activating protein 1 Arfgap1 246310 NM_145090 0006810 // transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation /// 0048205 // COPI coating of Golgi vesicle // not recorded 0000139 // Golgi membrane // inferred from direct assay /// 0000139 // Golgi membrane // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation 0005096 // GTPase activator activity // traceable author statement /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370365_at L38615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L38615.1 /DB_XREF=gi:755063 /FEA=FLmRNA /CNT=12 /TID=Rn.1692.1 /TIER=FL+Stack /STK=7 /UG=Rn.1692 /LL=25458 /UG_GENE=Gss /DEF=Rattus norvegicus glutathione synthetase mRNA, complete cds. /PROD=glutathione synthetase /FL=gb:L38615.1 L38615 glutathione synthetase Gss 25458 NM_012962 0006750 // glutathione biosynthetic process // inferred from direct assay /// 0006750 // glutathione biosynthetic process // not recorded /// 0006750 // glutathione biosynthetic process // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0009410 // response to xenobiotic stimulus // inferred from expression pattern /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0034612 // response to tumor necrosis factor // inferred from expression pattern /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0046686 // response to cadmium ion // inferred from electronic annotation /// 0046686 // response to cadmium ion // not recorded 0005625 // soluble fraction // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004363 // glutathione synthase activity // inferred from direct assay /// 0004363 // glutathione synthase activity // not recorded /// 0004363 // glutathione synthase activity // non-traceable author statement /// 0004363 // glutathione synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0016594 // glycine binding // inferred from direct assay /// 0016874 // ligase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0043295 // glutathione binding // inferred from direct assay /// 0043295 // glutathione binding // not recorded /// 0043295 // glutathione binding // inferred from sequence or structural similarity /// 0043295 // glutathione binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370366_at AF150091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF150091.1 /DB_XREF=gi:5107169 /GEN=TIM10 /FEA=FLmRNA /CNT=10 /TID=Rn.8106.1 /TIER=FL+Stack /STK=7 /UG=Rn.8106 /LL=64464 /DEF=Rattus norvegicus small zinc finger-like protein (TIM10) mRNA, complete cds. /PROD=small zinc finger-like protein /FL=gb:AF150091.1 AF150091 translocase of inner mitochondrial membrane 10 homolog (yeast) Timm10 64464 NM_172074 0006626 // protein targeting to mitochondrion // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0045039 // protein import into mitochondrial inner membrane // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0042719 // mitochondrial intermembrane space protein transporter complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370367_at D63772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D63772.1 /DB_XREF=gi:961490 /FEA=FLmRNA /CNT=16 /TID=Rn.6384.1 /TIER=FL+Stack /STK=7 /UG=Rn.6384 /LL=25550 /UG_GENE=Slc1a1 /DEF=Rat mRNA for neuronal high affinity glutamate transporter, complete cds. /PROD=neuronal high affinity glutamate transporter /FL=gb:U39555.1 gb:D63772.1 gb:U21104.1 D63772 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 Slc1a1 25550 NM_013032 0003333 // amino acid transmembrane transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006835 // dicarboxylic acid transport // inferred from electronic annotation /// 0015807 // L-amino acid transport // not recorded /// 0015813 // L-glutamate transport // inferred from direct assay /// 0015813 // L-glutamate transport // not recorded /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051938 // L-glutamate import // inferred from electronic annotation /// 0051938 // L-glutamate import // not recorded /// 0070779 // D-aspartate import // inferred from electronic annotation /// 0070779 // D-aspartate import // not recorded /// 0071436 // sodium ion export // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005313 // L-glutamate transmembrane transporter activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0015293 // symporter activity // inferred from electronic annotation /// 0015501 // glutamate:sodium symporter activity // inferred from direct assay /// 0015501 // glutamate:sodium symporter activity // not recorded /// 0015501 // glutamate:sodium symporter activity // inferred from electronic annotation /// 0016595 // glutamate binding // inferred from direct assay /// 0017153 // sodium:dicarboxylate symporter activity // inferred from electronic annotation 1370368_at AF061947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF061947.1 /DB_XREF=gi:3323606 /FEA=FLmRNA /CNT=12 /TID=Rn.4.1 /TIER=FL+Stack /STK=7 /UG=Rn.4 /LL=94165 /UG_GENE=Cain /DEF=Rattus norvegicus cain mRNA, complete cds. /PROD=cain /FL=gb:AF061947.1 AF061947 calcineurin binding protein 1 Cabin1 94165 NM_053575 0006916 // anti-apoptosis // traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004864 // phosphoprotein phosphatase inhibitor activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // traceable author statement /// 0030346 // protein phosphatase 2B binding // inferred from direct assay 1370369_at L05175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L05175.1 /DB_XREF=gi:206691 /FEA=FLmRNA /CNT=10 /TID=Rn.9838.1 /TIER=FL+Stack /STK=7 /UG=Rn.9838 /LL=29252 /UG_GENE=Gzmm /DEF=Rattus norvegicus serine protease mRNA, complete cds. /PROD=serine protease /FL=gb:L05175.1 L05175 granzyme M (lymphocyte met-ase 1) Gzmm 29252 NM_057183 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0019835 // cytolysis // inferred from electronic annotation /// 0019835 // cytolysis // not recorded 0005576 // extracellular region // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004175 // endopeptidase activity // not recorded /// 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from direct assay /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1370370_at AF034218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF034218.1 /DB_XREF=gi:4104235 /GEN=Hyal2 /FEA=FLmRNA /CNT=11 /TID=Rn.8278.1 /TIER=FL+Stack /STK=7 /UG=Rn.8278 /LL=64468 /DEF=Rattus norvegicus hyaluronidase (Hyal2) mRNA, complete cds. /PROD=hyaluronidase /FL=gb:AF034218.1 AF034218 hyaluronoglucosaminidase 2 Hyal2 64468 NM_172040 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0030214 // hyaluronan catabolic process // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004415 // hyalurononglucosaminidase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation 1370371_a_at U23056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U23056.1 /DB_XREF=gi:1353245 /FEA=FLmRNA /CNT=10 /TID=Rn.2382.2 /TIER=FL+Stack /STK=7 /UG=Rn.2382 /LL=81613 /UG_GENE=Ceacam1 /DEF=Rattus norvegicus C-CAM4 mRNA, complete cds. /PROD=C-CAM4 /FL=gb:U23056.1 U23056 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) /// carcinoembryonic antigen-related cell adhesion molecule 10 Ceacam1 /// Ceacam10 287009 /// 81613 NM_001033860 /// NM_001033861 /// NM_001033862 /// NM_031755 /// NM_173339 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // inferred from direct assay /// 0043406 // positive regulation of MAP kinase activity // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0019901 // protein kinase binding // inferred from physical interaction 1370372_at AF134409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF134409.1 /DB_XREF=gi:5059121 /FEA=FLmRNA /CNT=13 /TID=Rn.34097.1 /TIER=FL+Stack /STK=7 /UG=Rn.34097 /LL=171099 /UG_GENE=Rasd2 /DEF=Rattus norvegicus Rhes protein mRNA, complete cds. /PROD=Rhes protein /FL=gb:AF134409.1 AF134409 RASD family, member 2 Rasd2 171099 NM_133568 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0007626 // locomotory behavior // inferred from sequence or structural similarity /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0031397 // negative regulation of protein ubiquitination // inferred from direct assay /// 0033235 // positive regulation of protein sumoylation // inferred from direct assay /// 0043949 // regulation of cAMP-mediated signaling // inferred from direct assay /// 0051897 // positive regulation of protein kinase B signaling cascade // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation /// 0031624 // ubiquitin conjugating enzyme binding // inferred from physical interaction /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction 1370373_at BF404624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404624 /DB_XREF=gi:11392599 /DB_XREF=UI-R-CA1-bih-f-12-0-UI.s1 /CLONE=UI-R-CA1-bih-f-12-0-UI /FEA=FLmRNA /CNT=13 /TID=Rn.34097.1 /TIER=Stack /STK=6 /UG=Rn.34097 /LL=171099 /UG_GENE=Rasd2 /UG_TITLE=RASD family, member 2 /FL=gb:AF134409.1 BF404624 RASD family, member 2 Rasd2 171099 NM_133568 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0007626 // locomotory behavior // inferred from sequence or structural similarity /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0031397 // negative regulation of protein ubiquitination // inferred from direct assay /// 0033235 // positive regulation of protein sumoylation // inferred from direct assay /// 0043949 // regulation of cAMP-mediated signaling // inferred from direct assay /// 0051897 // positive regulation of protein kinase B signaling cascade // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation /// 0031624 // ubiquitin conjugating enzyme binding // inferred from physical interaction /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction 1370374_at AF335281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF335281.1 /DB_XREF=gi:12642828 /FEA=FLmRNA /CNT=13 /TID=Rn.16304.1 /TIER=FL+Stack /STK=7 /UG=Rn.16304 /LL=170824 /UG_GENE=LOC170824 /DEF=Rattus norvegicus tumor suppressor pHyde mRNA, complete cds. /PROD=tumor suppressor pHyde /FL=gb:AF238865.1 gb:AF335281.1 AF335281 STEAP family member 3 Steap3 170824 NM_133314 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006826 // iron ion transport // inferred from electronic annotation /// 0006826 // iron ion transport // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009306 // protein secretion // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005771 // multivesicular body // not recorded /// 0005886 // plasma membrane // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000293 // ferric-chelate reductase activity // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1370375_at J05499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J05499.1 /DB_XREF=gi:1196813 /FEA=FLmRNA /CNT=12 /TID=Rn.10202.1 /TIER=FL+Stack /STK=7 /UG=Rn.10202 /DEF=Rattus norvegicus L-glutamine amidohydrolase mRNA, complete cds. /PROD=L-glutamine amidohydrolase /FL=gb:J05499.1 J05499 glutaminase 2 (liver, mitochondrial) Gls2 192268 NM_138904 0006541 // glutamine metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // traceable author statement 0004359 // glutaminase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1370376_a_at AA866458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866458 /DB_XREF=gi:4229985 /DB_XREF=UI-R-E0-br-e-12-0-UI.s1 /CLONE=UI-R-E0-br-e-12-0-UI /FEA=FLmRNA /CNT=20 /TID=Rn.3306.2 /TIER=Stack /STK=6 /UG=Rn.3306 /LL=83807 /UG_GENE=YB2 /UG_TITLE=muscle Y-box protein YB2 /FL=gb:U22893.1 AA866458 cold shock domain protein A Csda 83807 NM_031979 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0007283 // spermatogenesis // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0009566 // fertilization // inferred from electronic annotation /// 0009566 // fertilization // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0046622 // positive regulation of organ growth // inferred from electronic annotation /// 0046622 // positive regulation of organ growth // not recorded /// 0048642 // negative regulation of skeletal muscle tissue development // inferred from electronic annotation /// 0048642 // negative regulation of skeletal muscle tissue development // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005844 // polysome // inferred from electronic annotation /// 0005844 // polysome // not recorded /// 0005921 // gap junction // inferred from direct assay /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003697 // single-stranded DNA binding // not recorded /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // inferred from mutant phenotype 1370377_at M25143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M25143.1 /DB_XREF=gi:203775 /FEA=FLmRNA /CNT=7 /TID=Rn.10842.1 /TIER=FL+Stack /STK=7 /UG=Rn.10842 /UG_TITLE=Rat cytochrome P450CMF1b mRNA, complete cds /DEF=Rat cytochrome P450CMF1b mRNA, complete cds. /FL=gb:M25143.1 gb:J02867.1 gb:M22329.1 gb:AB008422.1 gb:J02869.1 gb:M22328.1 gb:M16654.1 M25143 cytochrome P450, family 2, subfamily d, polypeptide 1 /// cytochrome P450, family 2, subfamily d, polypeptide 5 Cyp2d1 /// Cyp2d5 266684 /// 286963 NM_153313 /// NM_173304 0010033 // response to organic substance // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0042493 // response to drug // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from direct assay /// 0004497 // monooxygenase activity // traceable author statement /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1370378_at J05266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J05266.1 /DB_XREF=gi:203054 /FEA=FLmRNA /CNT=53 /TID=Rn.40255.1 /TIER=FL+Stack /STK=6 /UG=Rn.40255 /LL=65262 /UG_GENE=Atp5a1 /UG_TITLE=mitochondrial H+-ATP synthase alpha subunit /DEF=Rat mitochondrial H+-ATP synthase alpha subunit mRNA, complete cds. /FL=gb:J05266.1 J05266 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle Atp5a1 65262 NM_023093 0001937 // negative regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0006172 // ADP biosynthetic process // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // not recorded /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0015992 // proton transport // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0046034 // ATP metabolic process // inferred from direct assay /// 0046034 // ATP metabolic process // inferred from electronic annotation 0000275 // mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005753 // mitochondrial proton-transporting ATP synthase complex // not recorded /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016469 // proton-transporting two-sector ATPase complex // inferred from electronic annotation /// 0033178 // proton-transporting two-sector ATPase complex, catalytic domain // inferred from electronic annotation /// 0045261 // proton-transporting ATP synthase complex, catalytic core F(1) // inferred from direct assay /// 0045261 // proton-transporting ATP synthase complex, catalytic core F(1) // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from mutant phenotype /// 0016887 // ATPase activity // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0042288 // MHC class I protein binding // inferred from electronic annotation /// 0042288 // MHC class I protein binding // not recorded /// 0043499 // eukaryotic cell surface binding // inferred from electronic annotation /// 0043499 // eukaryotic cell surface binding // not recorded /// 0043531 // ADP binding // inferred from direct assay /// 0046933 // hydrogen ion transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation /// 0046933 // hydrogen ion transporting ATP synthase activity, rotational mechanism // not recorded /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 1370379_at AF202076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF202076.1 /DB_XREF=gi:11181572 /FEA=FLmRNA /CNT=19 /TID=Rn.24211.1 /TIER=FL+Stack /STK=6 /UG=Rn.24211 /DEF=Rattus norvegicus prostasin mRNA, complete cds. /PROD=prostasin /FL=gb:AB017638.1 gb:AF202076.1 AF202076 protease, serine, 8 Prss8 192107 NM_138836 0001942 // hair follicle development // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0010765 // positive regulation of sodium ion transport // inferred from electronic annotation /// 0010765 // positive regulation of sodium ion transport // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0051385 // response to mineralocorticoid stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from mutant phenotype /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017080 // sodium channel regulator activity // inferred from mutant phenotype 1370380_s_at AA997437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997437 /DB_XREF=gi:4283561 /DB_XREF=UI-R-C0-hr-h-02-0-UI.s1 /CLONE=UI-R-C0-hr-h-02-0-UI /FEA=FLmRNA /CNT=21 /TID=Rn.25840.1 /TIER=Stack /STK=11 /UG=Rn.25840 /UG_TITLE=Rattus norvegicus ovalbumin upstream promoter gamma nuclear receptor rCOUPg mRNA, complete cds /FL=gb:AF003926.1 AA997437 nuclear receptor subfamily 2, group F, member 6 Nr2f6 245980 NM_139113 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0043153 // entrainment of circadian clock by photoperiod // inferred from electronic annotation /// 0043153 // entrainment of circadian clock by photoperiod // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048666 // neuron development // inferred from electronic annotation /// 0048666 // neuron development // not recorded /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // inferred from electronic annotation /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370381_at U61729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U61729.1 /DB_XREF=gi:1408276 /FEA=FLmRNA /CNT=18 /TID=Rn.10967.1 /TIER=FL+Stack /STK=6 /UG=Rn.10967 /DEF=Rattus norvegicus proline rich protein mRNA, complete cds. /PROD=proline rich protein /FL=gb:U61729.1 U61729 proline-rich nuclear receptor coactivator 1 Pnrc1 286988 NM_173322 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // not recorded 1370382_at BI279526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279526 /DB_XREF=gi:14927424 /DB_XREF=UI-R-DA0-byo-e-11-0-UI.s1 /CLONE=UI-R-DA0-byo-e-11-0-UI /FEA=mRNA /CNT=12 /TID=Rn.33311.1 /TIER=ConsEnd /STK=5 /UG=Rn.33311 /UG_TITLE=Rat mRNA for RT1.D beta chain BI279526 RT1 class II, locus Db1 RT1-Db1 294270 NM_001008884 0002504 // antigen processing and presentation of peptide or polysaccharide antigen via MHC class II // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042613 // MHC class II protein complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370383_s_at BI279526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279526 /DB_XREF=gi:14927424 /DB_XREF=UI-R-DA0-byo-e-11-0-UI.s1 /CLONE=UI-R-DA0-byo-e-11-0-UI /FEA=mRNA /CNT=12 /TID=Rn.33311.1 /TIER=ConsEnd /STK=5 /UG=Rn.33311 /UG_TITLE=Rat mRNA for RT1.D beta chain BI279526 RT1 class II, locus Db1 RT1-Db1 294270 NM_001008884 0002504 // antigen processing and presentation of peptide or polysaccharide antigen via MHC class II // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042613 // MHC class II protein complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370384_a_at M57668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M57668.1 /DB_XREF=gi:206366 /GEN=PRL receptor /FEA=FLmRNA /CNT=8 /TID=Rn.9757.2 /TIER=FL+Stack /STK=6 /UG=Rn.9757 /LL=24684 /DEF=Rat prolactin receptor (ovarian form) mRNA, complete cds. /PROD=prolactin receptor /FL=gb:M34083.1 gb:M57668.1 M57668 prolactin receptor Prlr 24684 NM_001034111 /// NM_012630 0007171 // activation of transmembrane receptor protein tyrosine kinase activity // not recorded /// 0007259 // JAK-STAT cascade // not recorded /// 0007595 // lactation // not recorded /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0030155 // regulation of cell adhesion // not recorded /// 0030856 // regulation of epithelial cell differentiation // not recorded /// 0060644 // mammary gland epithelial cell differentiation // not recorded /// 0060736 // prostate gland growth // not recorded /// 0060749 // mammary gland alveolus development // not recorded 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004925 // prolactin receptor activity // inferred from mutant phenotype /// 0004925 // prolactin receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0017046 // peptide hormone binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1370385_at U51898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U51898.1 /DB_XREF=gi:1743845 /FEA=FLmRNA /CNT=10 /TID=Rn.44692.1 /TIER=FL+Stack /STK=6 /UG=Rn.44692 /LL=116672 /UG_GENE=Pla2g6 /DEF=Rattus norvegicus Ca2+-independent phospholipase A2 mRNA, complete cds. /PROD=Ca2+-independent phospholipase A2 /FL=gb:U51898.1 U51898 phospholipase A2, group VI (cytosolic, calcium-independent) Pla2g6 360426 NM_001005560 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0032049 // cardiolipin biosynthetic process // inferred from electronic annotation /// 0032049 // cardiolipin biosynthetic process // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded 0004623 // phospholipase A2 activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0047499 // calcium-independent phospholipase A2 activity // inferred from direct assay 1370386_at AB002406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB002406.1 /DB_XREF=gi:2225876 /FEA=FLmRNA /CNT=9 /TID=Rn.37500.2 /TIER=FL+Stack /STK=6 /UG=Rn.37500 /LL=65137 /UG_GENE=Ruvbl1 /DEF=Rattus norvegicus mRNA for TIP49, complete cds. /PROD=TIP49 /FL=gb:AB002406.1 gb:AB001581.1 AB002406 RuvB-like 1 (E. coli) Ruvbl1 65137 NM_147177 0006310 // DNA recombination // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0040008 // regulation of growth // inferred from electronic annotation /// 0043967 // histone H4 acetylation // not recorded /// 0043967 // histone H4 acetylation // inferred from sequence or structural similarity /// 0043968 // histone H2A acetylation // not recorded /// 0043968 // histone H2A acetylation // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded /// 0035267 // NuA4 histone acetyltransferase complex // not recorded /// 0035267 // NuA4 histone acetyltransferase complex // inferred from sequence or structural similarity /// 0043234 // protein complex // inferred from direct assay /// 0071339 // MLL1 complex // not recorded /// 0071339 // MLL1 complex // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003678 // DNA helicase activity // inferred from electronic annotation /// 0003678 // DNA helicase activity // not recorded /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1370387_at U46118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U46118.1 /DB_XREF=gi:1276917 /FEA=FLmRNA /CNT=7 /TID=Rn.10489.1 /TIER=FL+Stack /STK=6 /UG=Rn.10489 /DEF=Rattus norvegicus cytochrome P450 3A9 mRNA, complete cds. /PROD=cytochrome P450 3A9 /FL=gb:U60085.1 gb:U46118.1 U46118 cytochrome P450, family 3, subfamily a, polypeptide 9 Cyp3a9 171352 NM_147206 0007608 // sensory perception of smell // inferred from electronic annotation /// 0009822 // alkaloid catabolic process // not recorded /// 0042737 // drug catabolic process // not recorded /// 0050896 // response to stimulus // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0070989 // oxidative demethylation // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from sequence or structural similarity /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008395 // steroid hydroxylase activity // traceable author statement /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0019825 // oxygen binding // not recorded /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1370388_at AF100172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF100172.1 /DB_XREF=gi:4323548 /FEA=FLmRNA /CNT=11 /TID=Rn.24105.1 /TIER=FL+Stack /STK=6 /UG=Rn.24105 /DEF=Rattus norvegicus sodiumhydrogen exchanger 5 mRNA, complete cds. /PROD=sodiumhydrogen exchanger 5 /FL=gb:AF100172.1 AF100172 solute carrier family 9 (sodium/hydrogen exchanger), member 5 Slc9a5 192215 NM_138858 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006885 // regulation of pH // inferred from electronic annotation /// 0015992 // proton transport // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0015297 // antiporter activity // inferred from electronic annotation /// 0015299 // solute:hydrogen antiporter activity // inferred from electronic annotation /// 0015385 // sodium:hydrogen antiporter activity // inferred from direct assay /// 0015385 // sodium:hydrogen antiporter activity // inferred from electronic annotation 1370389_at AB036421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB036421.1 /DB_XREF=gi:8926936 /GEN=rhombex-29 /FEA=FLmRNA /CNT=9 /TID=Rn.8057.1 /TIER=FL+Stack /STK=6 /UG=Rn.8057 /DEF=Rattus norvegicus mRNA for Rhombex-29, complete cds. /PROD=Rhombex-29 /FL=gb:AB036421.1 AB036421 glycoprotein m6b Gpm6b 192179 NM_138846 1370390_at AF140359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF140359.1 /DB_XREF=gi:15430627 /FEA=FLmRNA /CNT=8 /TID=Rn.28432.1 /TIER=FL+Stack /STK=6 /UG=Rn.28432 /DEF=Rattus norvegicus coronin relative protein mRNA, complete cds. /PROD=coronin relative protein /FL=gb:AF140359.1 AF140359 coronin 6 Coro6 245982 NM_139115 1370391_at U23407 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U23407.1 /DB_XREF=gi:727432 /GEN=CRABP II /FEA=FLmRNA /CNT=7 /TID=Rn.11333.1 /TIER=FL+Stack /STK=6 /UG=Rn.11333 /LL=29563 /DEF=Rattus norvegicus cellular retinoic acid-binding protein II (CRABP II) mRNA, complete cds. /PROD=cellular retinoic acid-binding protein II /FL=gb:U23407.1 U23407 cellular retinoic acid binding protein 2 Crabp2 29563 NM_017244 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // non-traceable author statement /// 0035115 // embryonic forelimb morphogenesis // inferred from electronic annotation /// 0035115 // embryonic forelimb morphogenesis // not recorded /// 0042573 // retinoic acid metabolic process // not recorded /// 0042573 // retinoic acid metabolic process // non-traceable author statement /// 0042573 // retinoic acid metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0001972 // retinoic acid binding // inferred from electronic annotation /// 0001972 // retinoic acid binding // not recorded /// 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008289 // lipid binding // traceable author statement /// 0008289 // lipid binding // inferred from electronic annotation /// 0016918 // retinal binding // inferred from electronic annotation /// 0019841 // retinol binding // inferred from electronic annotation 1370392_at AB040807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB040807.1 /DB_XREF=gi:10566460 /GEN=MLS2s /FEA=FLmRNA /CNT=6 /TID=Rn.25258.1 /TIER=FL+Stack /STK=6 /UG=Rn.25258 /LL=171143 /DEF=Rattus norvegicus MLS2s mRNA for melastatin like 2, complete cds. /PROD=melastatin like 2 /FL=gb:AB040807.1 AB040807 transient receptor potential cation channel, subfamily M, member 4 Trpm4 171143 NM_001136229 0002407 // dendritic cell chemotaxis // inferred from sequence or structural similarity /// 0002724 // regulation of T cell cytokine production // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0016925 // protein sumoylation // inferred from sequence or structural similarity /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // not recorded /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // inferred from sequence or structural similarity 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005227 // calcium activated cation channel activity // inferred from direct assay /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1370393_at BF418951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418951 /DB_XREF=gi:11406940 /DB_XREF=UI-R-BJ2-bqk-g-10-0-UI.s1 /CLONE=UI-R-BJ2-bqk-g-10-0-UI /FEA=FLmRNA /CNT=21 /TID=Rn.29736.1 /TIER=Stack /STK=9 /UG=Rn.29736 /UG_TITLE=Rattus norvegicus unknown mRNA, complete cds /FL=gb:AF092207.1 BF418951 HAUS augmin-like complex, subunit 1 Haus1 192228 NM_138864 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0051225 // spindle assembly // inferred from electronic annotation /// 0051225 // spindle assembly // not recorded /// 0051225 // spindle assembly // inferred from sequence or structural similarity /// 0051297 // centrosome organization // inferred from electronic annotation /// 0051297 // centrosome organization // not recorded /// 0051297 // centrosome organization // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation 0000922 // spindle pole // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0070652 // HAUS complex // inferred from electronic annotation /// 0070652 // HAUS complex // not recorded /// 0070652 // HAUS complex // inferred from sequence or structural similarity 1370394_at L22654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L22654.1 /DB_XREF=gi:1220485 /FEA=FLmRNA /CNT=10 /TID=Rn.2255.1 /TIER=FL /STK=5 /UG=Rn.2255 /DEF=Rat anti-acetylcholine receptor antibody gene, rearranged Ig gamma-2a chain, VDJC region, complete cds. /PROD=gamma-2a immunoglobulin heavy chain /FL=gb:L22652.1 gb:L22654.1 L22654 gamma-2a immunoglobulin heavy chain /// hypothetical protein LOC100363671 IgG-2a /// LOC100363671 100363671 /// 367586 XM_002726773 0003823 // antigen binding // inferred from electronic annotation 1370395_at U18650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U18650.1 /DB_XREF=gi:841189 /FEA=FLmRNA /CNT=13 /TID=Rn.11193.1 /TIER=FL /STK=5 /UG=Rn.11193 /LL=29424 /UG_GENE=Hdh /UG_TITLE=Huntington disease gene homolog /DEF=Rattus norvegicus Huntington gene product mRNA, complete cds. /FL=gb:U18650.1 U18650 huntingtin Htt 29424 NM_024357 0000050 // urea cycle // inferred from electronic annotation /// 0000050 // urea cycle // not recorded /// 0000052 // citrulline metabolic process // inferred from electronic annotation /// 0000052 // citrulline metabolic process // not recorded /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006606 // protein import into nucleus // not recorded /// 0006839 // mitochondrial transport // not recorded /// 0006839 // mitochondrial transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0007029 // endoplasmic reticulum organization // inferred from electronic annotation /// 0007029 // endoplasmic reticulum organization // not recorded /// 0007212 // dopamine receptor signaling pathway // inferred from electronic annotation /// 0007212 // dopamine receptor signaling pathway // not recorded /// 0007275 // multicellular organismal development // traceable author statement /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007369 // gastrulation // inferred from electronic annotation /// 0007369 // gastrulation // not recorded /// 0007417 // central nervous system development // not recorded /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007569 // cell aging // inferred from electronic annotation /// 0007569 // cell aging // not recorded /// 0007610 // behavior // not recorded /// 0007610 // behavior // inferred from electronic annotation /// 0007611 // learning or memory // not recorded /// 0007611 // learning or memory // inferred from electronic annotation /// 0007612 // learning // not recorded /// 0007612 // learning // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008088 // axon cargo transport // inferred from electronic annotation /// 0008088 // axon cargo transport // not recorded /// 0008219 // cell death // traceable author statement /// 0008306 // associative learning // not recorded /// 0008306 // associative learning // inferred from electronic annotation /// 0008340 // determination of adult lifespan // inferred from electronic annotation /// 0008340 // determination of adult lifespan // not recorded /// 0008542 // visual learning // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0009653 // anatomical structure morphogenesis // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0016197 // endosome transport // inferred from electronic annotation /// 0016197 // endosome transport // not recorded /// 0019244 // lactate biosynthetic process from pyruvate // inferred from electronic annotation /// 0019244 // lactate biosynthetic process from pyruvate // not recorded /// 0019805 // quinolinate biosynthetic process // inferred from electronic annotation /// 0019805 // quinolinate biosynthetic process // not recorded /// 0021756 // striatum development // inferred from electronic annotation /// 0021756 // striatum development // not recorded /// 0021988 // olfactory lobe development // inferred from electronic annotation /// 0021988 // olfactory lobe development // not recorded /// 0021990 // neural plate formation // inferred from electronic annotation /// 0021990 // neural plate formation // not recorded /// 0022008 // neurogenesis // inferred from electronic annotation /// 0022008 // neurogenesis // not recorded /// 0030072 // peptide hormone secretion // not recorded /// 0030072 // peptide hormone secretion // inferred from electronic annotation /// 0030073 // insulin secretion // inferred from electronic annotation /// 0030073 // insulin secretion // not recorded /// 0035176 // social behavior // inferred from electronic annotation /// 0035176 // social behavior // not recorded /// 0042445 // hormone metabolic process // inferred from electronic annotation /// 0042445 // hormone metabolic process // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0046902 // regulation of mitochondrial membrane permeability // inferred from electronic annotation /// 0046902 // regulation of mitochondrial membrane permeability // not recorded /// 0047496 // vesicle transport along microtubule // inferred from electronic annotation /// 0047496 // vesicle transport along microtubule // not recorded /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // not recorded /// 0048341 // paraxial mesoderm formation // inferred from electronic annotation /// 0048341 // paraxial mesoderm formation // not recorded /// 0048666 // neuron development // inferred from electronic annotation /// 0048666 // neuron development // not recorded /// 0051402 // neuron apoptosis // not recorded /// 0051402 // neuron apoptosis // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded /// 0051881 // regulation of mitochondrial membrane potential // inferred from electronic annotation /// 0051881 // regulation of mitochondrial membrane potential // not recorded /// 0051938 // L-glutamate import // inferred from electronic annotation /// 0051938 // L-glutamate import // not recorded /// 0055072 // iron ion homeostasis // inferred from electronic annotation /// 0055072 // iron ion homeostasis // not recorded 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0016234 // inclusion body // inferred from electronic annotation /// 0016234 // inclusion body // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0034399 // nuclear periphery // inferred from electronic annotation /// 0034399 // nuclear periphery // not recorded 0005246 // calcium channel regulator activity // inferred from mutant phenotype /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0050809 // diazepam binding // inferred from electronic annotation /// 0050809 // diazepam binding // not recorded 1370396_x_at AF198441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF198441.1 /DB_XREF=gi:6537315 /FEA=FLmRNA /CNT=9 /TID=Rn.1658.4 /TIER=FL /STK=5 /UG=Rn.1658 /LL=25392 /UG_GENE=Atpi /DEF=Rattus norvegicus urinary protein 2 precursor, mRNA, complete cds. /PROD=urinary protein 2 precursor /FL=gb:AF198441.1 AF198441 urinary protein 2 Rup2 619560 NM_001034950 0005576 // extracellular region // inferred from electronic annotation 1370397_at M33936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M33936.1 /DB_XREF=gi:204989 /FEA=FLmRNA /CNT=8 /TID=Rn.33492.1 /TIER=FL /STK=5 /UG=Rn.33492 /UG_TITLE=Rat Cyp4a locus, encoding cytochrome P450 (IVA3) mRNA, complete cds /DEF=Rat Cyp4a locus, encoding cytochrome P450 (IVA3) mRNA, complete cds. /FL=gb:M33936.1 M33936 cytochrome P450, family 4, subfamily a, polypeptide 3 Cyp4a3 298423 NM_175760 0001822 // kidney development // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0019369 // arachidonic acid metabolic process // inferred from mutant phenotype /// 0019369 // arachidonic acid metabolic process // traceable author statement /// 0042493 // response to drug // inferred from expression pattern /// 0043651 // linoleic acid metabolic process // inferred from direct assay /// 0046456 // icosanoid biosynthetic process // inferred from mutant phenotype /// 0048252 // lauric acid metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005504 // fatty acid binding // inferred from direct assay /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008391 // arachidonic acid monooxygenase activity // inferred from mutant phenotype /// 0008405 // arachidonic acid 11,12-epoxygenase activity // traceable author statement /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0018685 // alkane 1-monooxygenase activity // inferred from mutant phenotype /// 0018685 // alkane 1-monooxygenase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050544 // arachidonic acid binding // inferred from direct assay 1370398_at AF094609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF094609.1 /DB_XREF=gi:6018184 /FEA=FLmRNA /CNT=8 /TID=Rn.16241.1 /TIER=FL /STK=5 /UG=Rn.16241 /DEF=Rattus norvegicus fertility related protein WMP1 mRNA, complete cds. /PROD=fertility related protein WMP1 /FL=gb:AF094609.1 AF094609 spermatogenesis associated 7 Spata7 192225 NM_138862 0007283 // spermatogenesis // inferred from expression pattern 1370399_at M29853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M29853.1 /DB_XREF=gi:205911 /FEA=FLmRNA /CNT=8 /TID=Rn.5721.2 /TIER=FL /STK=5 /UG=Rn.5721 /LL=24307 /UG_GENE=Cyp4b1 /UG_TITLE=Cytochrome P450, subfamily IVB, polypeptide 1 /DEF=Rat cytochrome P-450 isozyme 5 (P450 IVB2) mRNA, complete cds. /FL=gb:M29853.1 M29853 cytochrome P450, family 4, subfamily b, polypeptide 1 Cyp4b1 24307 NM_016999 0006725 // cellular aromatic compound metabolic process // inferred from direct assay /// 0006725 // cellular aromatic compound metabolic process // inferred from mutant phenotype /// 0018879 // biphenyl metabolic process // inferred from mutant phenotype /// 0018917 // fluorene metabolic process // inferred from direct assay /// 0042738 // exogenous drug catabolic process // inferred from direct assay /// 0042738 // exogenous drug catabolic process // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from direct assay /// 0004497 // monooxygenase activity // inferred from mutant phenotype /// 0004497 // monooxygenase activity // traceable author statement /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0008144 // drug binding // inferred from mutant phenotype /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0018585 // fluorene oxygenase activity // inferred from direct assay /// 0019825 // oxygen binding // not recorded /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1370400_at L23128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L23128.1 /DB_XREF=gi:393218 /FEA=FLmRNA /CNT=7 /TID=Rn.80836.1 /TIER=FL /STK=5 /UG=Rn.80836 /UG_TITLE=Rattus norvegicus MHC class I mRNA, complete cds /DEF=Rattus norvegicus MHC class I mRNA, complete cds. /FL=gb:L23128.1 L23128 RT1 class Ib, locus N3 RT1-N3 24750 NM_001008855 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 1370401_at M30689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M30689.1 /DB_XREF=gi:205247 /FEA=FLmRNA /CNT=8 /TID=Rn.39703.1 /TIER=FL /STK=5 /UG=Rn.39703 /UG_TITLE=Rat Ly6-B antigen mRNA, complete cds /DEF=Rat Ly6-B antigen mRNA, complete cds. /FL=gb:M30689.1 M30689 lymphocyte antigen 6 complex, locus B Ly6b 246138 NM_139257 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 1370402_at AF223678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF223678.1 /DB_XREF=gi:7021450 /GEN=CBL20 /FEA=FLmRNA /CNT=6 /TID=Rn.3712.1 /TIER=FL /STK=5 /UG=Rn.3712 /DEF=Rattus norvegicus CBL20 (CBL20) mRNA, complete cds. /PROD=CBL20 /FL=gb:AF223678.1 AF223678 EGF-like-domain, multiple 7 Egfl7 245963 NM_139104 0001525 // angiogenesis // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001568 // blood vessel development // inferred from sequence or structural similarity /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001570 // vasculogenesis // inferred from sequence or structural similarity /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // not recorded 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005509 // calcium ion binding // inferred from electronic annotation 1370403_at AF234635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF234635.1 /DB_XREF=gi:7211780 /FEA=FLmRNA /CNT=6 /TID=Rn.19300.1 /TIER=FL /STK=5 /UG=Rn.19300 /DEF=Rattus norvegicus prolactin-like protein K mRNA, complete cds. /PROD=prolactin-like protein K /FL=gb:AF234635.1 gb:AB022882.1 AF234635 Prolactin family 2, subfamily b, member 1 Prl2b1 192224 NM_138861 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // traceable author statement /// 0005179 // hormone activity // inferred from electronic annotation 1370404_at AF440736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF440736.1 /DB_XREF=gi:16904365 /FEA=FLmRNA /CNT=6 /TID=Rn.58124.1 /TIER=FL /STK=5 /UG=Rn.58124 /DEF=Rattus norvegicus cystatin TE-1 mRNA, complete cds. /PROD=cystatin TE-1 /FL=gb:AF440736.1 AF440736 cystatin 12 Cst12 266776 NM_153734 0005576 // extracellular region // inferred from electronic annotation 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1370405_at U67915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U67915.1 /DB_XREF=gi:1698709 /GEN=RMCP-1 /FEA=FLmRNA /CNT=6 /TID=Rn.10701.2 /TIER=FL /STK=5 /UG=Rn.10701 /LL=29265 /DEF=Rattus norvegicus mast cell protease 1 precursor (RMCP-1) mRNA, complete cds. /PROD=mast cell protease 1 precursor /FL=gb:U67915.1 U67915 mast cell protease 1 Mcpt1 29265 NM_017145 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // non-traceable author statement /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1370406_a_at AB026903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB026903.1 /DB_XREF=gi:6683024 /FEA=FLmRNA /CNT=44 /TID=Rn.18841.1 /TIER=FL /STK=4 /UG=Rn.18841 /LL=64036 /UG_GENE=Daf /DEF=Rattus norvegicus mRNA for decay accelerating factor (GPI-form), complete cds, strain:Sprague Dawley. /PROD=decay accelerating factor (GPI-form) /FL=gb:AF039583.1 gb:AB026903.1 gb:AB026901.1 AB026903 Cd55 molecule Cd55 64036 NM_022269 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007283 // spermatogenesis // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045916 // negative regulation of complement activation // inferred from direct assay /// 0060137 // maternal process involved in parturition // inferred from expression pattern 0009897 // external side of plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from direct assay /// 0045121 // membrane raft // not recorded 0004857 // enzyme inhibitor activity // inferred from direct assay 1370407_at AF332142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF332142.1 /DB_XREF=gi:13242074 /GEN=Clp55 /FEA=FLmRNA /CNT=26 /TID=Rn.34505.1 /TIER=FL /STK=4 /UG=Rn.34505 /DEF=Rattus norvegicus chloride ion pump-associated 55 kDa protein (Clp55) mRNA, complete cds. /PROD=chloride ion pump-associated 55 kDa protein /FL=gb:AF332142.1 AF332142 prenylcysteine oxidase 1 Pcyox1 246302 NM_145085 0006821 // chloride transport // inferred from mutant phenotype /// 0030327 // prenylated protein catabolic process // inferred from electronic annotation /// 0030327 // prenylated protein catabolic process // not recorded /// 0030328 // prenylcysteine catabolic process // inferred from electronic annotation /// 0030328 // prenylcysteine catabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0034361 // very-low-density lipoprotein particle // inferred from electronic annotation /// 0034361 // very-low-density lipoprotein particle // not recorded 0001735 // prenylcysteine oxidase activity // inferred from electronic annotation /// 0001735 // prenylcysteine oxidase activity // not recorded /// 0008555 // chloride-transporting ATPase activity // inferred from mutant phenotype /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016670 // oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor // inferred from electronic annotation 1370408_at AF313411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF313411.1 /DB_XREF=gi:12484081 /FEA=FLmRNA /CNT=9 /TID=Rn.8865.1 /TIER=FL /STK=4 /UG=Rn.8865 /DEF=Rattus norvegicus putative small membrane protein NID67 mRNA, complete cds. /PROD=putative small membrane protein NID67 /FL=gb:AF313411.1 AF313411 putative small membrane protein NID67 Nid67 286910 NM_173126 0007399 // nervous system development // non-traceable author statement 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1370409_at AF075704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF075704.1 /DB_XREF=gi:6978015 /FEA=FLmRNA /CNT=9 /TID=Rn.20034.1 /TIER=FL /STK=4 /UG=Rn.20034 /LL=170567 /UG_GENE=Ata1 /DEF=Rattus norvegicus neuronal glutamine transporter mRNA, complete cds. /PROD=neuronal glutamine transporter /FL=gb:AF075704.1 AF075704 solute carrier family 38, member 1 Slc38a1 170567 NM_138832 0003333 // amino acid transmembrane transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded /// 0006868 // glutamine transport // not recorded /// 0006868 // glutamine transport // inferred from electronic annotation /// 0015807 // L-amino acid transport // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded 0015171 // amino acid transmembrane transporter activity // not recorded /// 0015179 // L-amino acid transmembrane transporter activity // not recorded /// 0015186 // L-glutamine transmembrane transporter activity // inferred from electronic annotation /// 0015186 // L-glutamine transmembrane transporter activity // not recorded /// 0015293 // symporter activity // inferred from electronic annotation 1370410_at AF322216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF322216.1 /DB_XREF=gi:13810897 /FEA=FLmRNA /CNT=12 /TID=Rn.23738.1 /TIER=FL /STK=4 /UG=Rn.23738 /DEF=Rattus norvegicus inhibin binding protein long isoform mRNA, complete cds; alternatively spliced. /PROD=inhibin binding protein long isoform /FL=gb:AF322216.1 AF322216 immunoglobulin superfamily, member 1 Igsf1 302822 NM_175763 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015026 // coreceptor activity // inferred from direct assay /// 0048186 // inhibin beta-A binding // inferred from electronic annotation /// 0048186 // inhibin beta-A binding // not recorded /// 0048187 // inhibin beta-B binding // inferred from electronic annotation /// 0048187 // inhibin beta-B binding // not recorded 1370411_at AF061266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF061266.1 /DB_XREF=gi:3786395 /FEA=FLmRNA /CNT=9 /TID=Rn.22963.1 /TIER=FL /STK=4 /UG=Rn.22963 /LL=89821 /UG_GENE=Trrp1 /DEF=Rattus norvegicus trp1 beta variant mRNA, complete cds. /PROD=trp1 beta variant /FL=gb:AF061266.1 AF061266 transient receptor potential cation channel, subfamily C, member 1 Trpc1 89821 NM_053558 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0046541 // saliva secretion // inferred from electronic annotation /// 0046541 // saliva secretion // not recorded /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from electronic annotation /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // not recorded /// 0051480 // cytosolic calcium ion homeostasis // inferred from electronic annotation /// 0051480 // cytosolic calcium ion homeostasis // not recorded /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0030017 // sarcomere // inferred from electronic annotation /// 0030017 // sarcomere // not recorded /// 0043034 // costamere // inferred from electronic annotation /// 0043034 // costamere // not recorded /// 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015279 // store-operated calcium channel activity // inferred from electronic annotation /// 0015279 // store-operated calcium channel activity // not recorded 1370412_at AF399874 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF399874.1 /DB_XREF=gi:15277843 /GEN=Fang2 /FEA=FLmRNA /CNT=6 /TID=Rn.13846.1 /TIER=FL /STK=4 /UG=Rn.13846 /DEF=Rattus norvegicus FANG2 (Fang2) mRNA, complete cds. /PROD=FANG2 /FL=gb:AF399874.1 AF399874 troponin T type 1 (skeletal, slow) Tnnt1 171409 NM_134388 0003009 // skeletal muscle contraction // inferred from electronic annotation /// 0003009 // skeletal muscle contraction // not recorded /// 0006937 // regulation of muscle contraction // inferred from direct assay /// 0031444 // slow-twitch skeletal muscle fiber contraction // inferred from direct assay /// 0045932 // negative regulation of muscle contraction // inferred from electronic annotation /// 0045932 // negative regulation of muscle contraction // not recorded 0005861 // troponin complex // inferred from direct assay /// 0005861 // troponin complex // not recorded /// 0005861 // troponin complex // inferred from electronic annotation 0005523 // tropomyosin binding // inferred from electronic annotation /// 0005523 // tropomyosin binding // not recorded /// 0031014 // troponin T binding // inferred from direct assay 1370413_at L26398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L26398.1 /DB_XREF=gi:16905399 /GEN=TR2 /FEA=FLmRNA /CNT=8 /TID=Rn.45271.1 /TIER=FL /STK=4 /UG=Rn.45271 /DEF=Rattus norvegicus orphan receptor (TR2) mRNA, complete cds. /PROD=orphan receptor /FL=gb:L26398.1 L26398 nuclear receptor subfamily 2, group C, member 1 Nr2c1 252924 NM_145780 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370414_at M94043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M94043.1 /DB_XREF=gi:206542 /FEA=FLmRNA /CNT=7 /TID=Rn.9824.1 /TIER=FL /STK=4 /UG=Rn.9824 /DEF=Rattus norvegicus rab-related GTP-binding protein mRNA, complete cds. /PROD=rab-related GTP-binding protein /FL=gb:M94043.1 M94043 RAB38, member RAS oncogene family Rab38 252916 NM_145774 0006996 // organelle organization // inferred from mutant phenotype /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // non-traceable author statement /// 0060155 // platelet dense granule organization // inferred from mutant phenotype 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0042598 // vesicular fraction // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred by curator /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // inferred by curator 1370415_at AF002251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF002251.1 /DB_XREF=gi:2459832 /FEA=FLmRNA /CNT=6 /TID=Rn.36106.1 /TIER=FL /STK=4 /UG=Rn.36106 /LL=54355 /UG_GENE=Maxp1 /DEF=Rattus norvegicus Maxp1 mRNA, complete cds. /PROD=Maxp1 /FL=gb:AF002251.1 AF002251 Ras association (RalGDS/AF-6) domain family member 5 Rassf5 54355 NM_019365 0006915 // apoptosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1370416_at U45986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U45986.1 /DB_XREF=gi:1209875 /FEA=FLmRNA /CNT=5 /TID=Rn.10214.1 /TIER=FL /STK=4 /UG=Rn.10214 /DEF=Rattus norvegicus Myx mRNA, complete cds. /PROD=Myx /FL=gb:U45986.1 U45986 Max dimerization protein 3 Mxd3 252915 NM_145773 0006350 // transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1370417_at M15527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M15527.1 /DB_XREF=gi:206910 /GEN=GnRH /FEA=FLmRNA /CNT=5 /TID=Rn.37410.1 /TIER=FL /STK=4 /UG=Rn.37410 /DEF=Rat SH-4 protein gene encoded opposite gonadotropin-releasing hormone (GnRH), complete cds. /PROD=gonadotropin-releasing hormone /FL=gb:M15527.1 M15527 gonadotropin-releasing hormone 1 (luteinizing-releasing hormone) Gnrh1 25194 NM_012767 0006916 // anti-apoptosis // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007275 // multicellular organismal development // not recorded /// 0007565 // female pregnancy // inferred from expression pattern /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0030728 // ovulation // traceable author statement /// 0031960 // response to corticosteroid stimulus // inferred from expression pattern /// 0042698 // ovulation cycle // inferred from expression pattern /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045471 // response to ethanol // not recorded /// 0048545 // response to steroid hormone stimulus // not recorded /// 0048545 // response to steroid hormone stimulus // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay 0005179 // hormone activity // inferred from electronic annotation /// 0005183 // gonadotropin hormone-releasing hormone activity // inferred from electronic annotation 1370418_s_at U30831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U30831.1 /DB_XREF=gi:1006784 /FEA=FLmRNA /CNT=7 /TID=Rn.31973.1 /TIER=FL /STK=4 /UG=Rn.31973 /DEF=Rattus norvegicus BK protein mRNA, complete cds. /PROD=BK protein /FL=gb:U30831.1 U30831 synaptotagmin XVII Syt17 192189 NM_138849 0006810 // transport // inferred from electronic annotation 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1370419_a_at AF230520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF230520.1 /DB_XREF=gi:7230619 /GEN=SETA /FEA=mRNA /CNT=1 /TID=Rn.24200.6 /TIER=ConsEnd /STK=0 /UG=Rn.24200 /LL=84357 /DEF=Rattus norvegicus SH3 domain-containing adapter protein isoform SETA-1x23 (SETA) mRNA, partial cds. /PROD=SH3 domain-containing adapter protein isoformSETA-1x23 AF230520 SH3-domain kinase binding protein 1 Sh3kbp1 84357 NM_053360 0006897 // endocytosis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation 1370420_at J05035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J05035.1 /DB_XREF=gi:206837 /FEA=FLmRNA /CNT=6 /TID=Rn.4620.1 /TIER=FL /STK=4 /UG=Rn.4620 /LL=24950 /UG_GENE=Srd5a1 /UG_TITLE=Steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1) /DEF=Rat steroid 5 alpha-reductase mRNA, complete cds. /FL=gb:J05035.1 J05035 steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1) Srd5a1 24950 NM_017070 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from direct assay /// 0006702 // androgen biosynthetic process // inferred from electronic annotation /// 0006702 // androgen biosynthetic process // not recorded /// 0007548 // sex differentiation // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042493 // response to drug // inferred from mutant phenotype /// 0046661 // male sex differentiation // traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // traceable author statement /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003865 // 3-oxo-5-alpha-steroid 4-dehydrogenase activity // inferred from direct assay /// 0003865 // 3-oxo-5-alpha-steroid 4-dehydrogenase activity // inferred from mutant phenotype /// 0003865 // 3-oxo-5-alpha-steroid 4-dehydrogenase activity // not recorded /// 0003865 // 3-oxo-5-alpha-steroid 4-dehydrogenase activity // inferred from sequence or structural similarity /// 0003865 // 3-oxo-5-alpha-steroid 4-dehydrogenase activity // traceable author statement /// 0003865 // 3-oxo-5-alpha-steroid 4-dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation 1370421_a_at AB029342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB029342.1 /DB_XREF=gi:5811586 /GEN=tip120b /FEA=FLmRNA /CNT=5 /TID=Rn.22139.1 /TIER=FL /STK=4 /UG=Rn.22139 /DEF=Rattus norvegicus mRNA for TIP120-family protein TIP120B, short form, complete cds. /PROD=TIP120-family protein TIP120B, short form /FL=gb:AB029342.1 AB029342 cullin-associated and neddylation-dissociated 2 (putative) Cand2 192226 NM_181362 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017025 // TATA-binding protein binding // inferred from direct assay /// 0017025 // TATA-binding protein binding // not recorded /// 0017025 // TATA-binding protein binding // inferred from electronic annotation 1370422_at AF036537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF036537.2 /DB_XREF=gi:14161747 /FEA=FLmRNA /CNT=5 /TID=Rn.7110.1 /TIER=FL /STK=4 /UG=Rn.7110 /DEF=Rattus norvegicus homocysteine respondent protein HCYP2 mRNA, complete cds. /PROD=homocysteine respondent protein HCYP2 /FL=gb:AF036537.2 AF036537 receptor-interacting serine-threonine kinase 3 Ripk3 246240 NM_139342 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0007249 // I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded /// 0016310 // phosphorylation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004704 // NF-kappaB-inducing kinase activity // inferred from electronic annotation /// 0004704 // NF-kappaB-inducing kinase activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1370423_at AB015308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB015308.1 /DB_XREF=gi:3219264 /FEA=FLmRNA /CNT=5 /TID=Rn.3574.1 /TIER=FL /STK=4 /UG=Rn.3574 /LL=89788 /UG_GENE=Gna15 /DEF=Rattus norvegicus mRNA for GTP binding protein alpha 15, complete cds. /PROD=GTP binding protein alpha 15 /FL=gb:AB015308.1 AB015308 guanine nucleotide binding protein, alpha 15 Gna15 89788 NM_053542 0006471 // protein ADP-ribosylation // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from direct assay /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // not recorded /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded 0005834 // heterotrimeric G-protein complex // traceable author statement /// 0005886 // plasma membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0004871 // signal transducer activity // inferred from expression pattern /// 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation 1370424_at L17318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L17318.1 /DB_XREF=gi:310199 /GEN=PRPG2 /FEA=FLmRNA /CNT=4 /TID=Rn.29950.1 /TIER=FL /STK=4 /UG=Rn.29950 /DEF=Rattus norvegicus proline-rich proteoglycan (PRPG2) mRNA, complete cds. /PROD=proline-rich proteoglycan /FL=gb:L17318.1 L17318 proline-rich protein BstNI subfamily 1 Prb1 257651 NM_172065 0005576 // extracellular region // inferred from electronic annotation 1370425_at AB039823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB039823.1 /DB_XREF=gi:8307685 /FEA=FLmRNA /CNT=11 /TID=Rn.33965.2 /TIER=FL /STK=4 /UG=Rn.33965 /LL=25687 /UG_GENE=Cald1 /DEF=Rattus norvegicus mRNA for alpha-2u globulin, complete cds, clone:PGCL2. /PROD=alpha-2u globulin /FL=gb:M26835.1 gb:AB039829.1 gb:AB039824.1 gb:M26838.1 gb:AB039823.1 gb:M26837.1 gb:AB039822.1 gb:M26836.1 gb:U31287.1 AB039823 alpha-2u globulin PGCL1 LOC259246 259246 NM_147214 0006810 // transport // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005550 // pheromone binding // inferred from electronic annotation 1370426_a_at AI175492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175492 /DB_XREF=gi:3726130 /DB_XREF=EST219044 /CLONE=RMUCO17 /FEA=FLmRNA /CNT=52 /TID=Rn.2305.3 /TIER=Stack /STK=13 /UG=Rn.2305 /LL=29693 /UG_GENE=Atp2a2 /UG_TITLE=ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 /FL=gb:J04024.1 AI175492 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 Atp2a2 29693 NM_001110139 /// NM_001110823 /// NR_027839 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002026 // regulation of the force of heart contraction // not recorded /// 0006200 // ATP catabolic process // not recorded /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006937 // regulation of muscle contraction // traceable author statement /// 0006984 // ER-nucleus signaling pathway // inferred from electronic annotation /// 0006984 // ER-nucleus signaling pathway // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0045822 // negative regulation of heart contraction // inferred from electronic annotation /// 0045822 // negative regulation of heart contraction // not recorded /// 0070588 // calcium ion transmembrane transport // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // not recorded /// 0016529 // sarcoplasmic reticulum // traceable author statement /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0033017 // sarcoplasmic reticulum membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // inferred from direct assay /// 0005388 // calcium-transporting ATPase activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // not recorded /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0031775 // lutropin-choriogonadotropic hormone receptor binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048155 // S100 alpha binding // inferred from electronic annotation /// 0048155 // S100 alpha binding // not recorded 1370427_at L06238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L06238.1 /DB_XREF=gi:206349 /FEA=FLmRNA /CNT=15 /TID=Rn.10999.1 /TIER=FL /STK=3 /UG=Rn.10999 /DEF=Rat platelet-derived growth factor A chain mRNA, complete cds. /PROD=platelet-derived growth factor A chain /FL=gb:L06894.1 gb:L06238.1 L06238 platelet-derived growth factor alpha polypeptide Pdgfa 25266 NM_012801 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001942 // hair follicle development // inferred from electronic annotation /// 0001942 // hair follicle development // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0009611 // response to wounding // not recorded /// 0009611 // response to wounding // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010512 // negative regulation of phosphatidylinositol biosynthetic process // inferred from electronic annotation /// 0010512 // negative regulation of phosphatidylinositol biosynthetic process // not recorded /// 0010544 // negative regulation of platelet activation // inferred from electronic annotation /// 0010544 // negative regulation of platelet activation // not recorded /// 0014910 // regulation of smooth muscle cell migration // inferred from electronic annotation /// 0014910 // regulation of smooth muscle cell migration // not recorded /// 0030031 // cell projection assembly // inferred from electronic annotation /// 0030031 // cell projection assembly // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0042060 // wound healing // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043588 // skin development // inferred from electronic annotation /// 0043588 // skin development // not recorded /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // not recorded /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0048008 // platelet-derived growth factor receptor signaling pathway // not recorded /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048286 // lung alveolus development // not recorded /// 0048839 // inner ear development // inferred from expression pattern /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050919 // negative chemotaxis // inferred from electronic annotation /// 0050919 // negative chemotaxis // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0060683 // regulation of branching involved in salivary gland morphogenesis by epithelial-mesenchymal signaling // inferred from electronic annotation /// 0060683 // regulation of branching involved in salivary gland morphogenesis by epithelial-mesenchymal signaling // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005902 // microvillus // inferred from electronic annotation /// 0005902 // microvillus // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // not recorded 0005161 // platelet-derived growth factor receptor binding // inferred from electronic annotation /// 0005161 // platelet-derived growth factor receptor binding // not recorded /// 0005518 // collagen binding // inferred from electronic annotation /// 0005518 // collagen binding // not recorded /// 0008083 // growth factor activity // traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043498 // cell surface binding // inferred from electronic annotation /// 0043498 // cell surface binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0048407 // platelet-derived growth factor binding // inferred from electronic annotation /// 0048407 // platelet-derived growth factor binding // not recorded 1370428_x_at AJ249701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ249701.1 /DB_XREF=gi:5912581 /GEN=RT1-A2q /FEA=mRNA /CNT=4 /TID=Rn.39743.8 /TIER=ConsEnd /STK=0 /UG=Rn.39743 /LL=24737 /DEF=Rattus norvegicus partial mRNA for MHC class Ia A2q antigen (RT1-A2q gene). /PROD=A2q AJ249701 RT1 class Ia, locus A2 /// RT1 class I, locus A3 /// RT1 class Ib, locus EC2 RT1-A2 /// RT1-A3 /// RT1-EC2 24737 /// 24974 /// 309627 NM_001008829 /// NM_001008830 /// NM_012645 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from direct assay /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0002517 // T cell tolerance induction // inferred from mutant phenotype /// 0002657 // positive regulation of tolerance induction to nonself antigen // inferred from mutant phenotype /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0045953 // negative regulation of natural killer cell mediated cytotoxicity // inferred from mutant phenotype 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0030881 // beta-2-microglobulin binding // inferred from physical interaction /// 0042277 // peptide binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1370429_at L40362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L40362.1 /DB_XREF=gi:992571 /FEA=FLmRNA /CNT=7 /TID=Rn.81121.1 /TIER=FL /STK=3 /UG=Rn.81121 /DEF=Rattus norvegicus MHC class I RT1.C-type protein mRNA, complete cds. /PROD=MHC class I RT1.C-type protein /FL=gb:L40362.1 L40362 RT1 class Ib, locus EC2 RT1-EC2 24737 NM_012645 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 1370430_at AF353304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF353304.1 /DB_XREF=gi:13569714 /FEA=FLmRNA /CNT=8 /TID=Rn.25503.1 /TIER=FL /STK=3 /UG=Rn.25503 /DEF=Rattus norvegicus neuronal specific transcription factor DAT1 mRNA, complete cds. /PROD=neuronal specific transcription factor DAT1 /FL=gb:AF353304.1 AF353304 similar to LIM domain only 3 RGD1561357 497798 XR_086241 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370431_at M27925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M27925.1 /DB_XREF=gi:206833 /GEN=synapsin 2a /FEA=FLmRNA /CNT=10 /TID=Rn.506.2 /TIER=FL /STK=3 /UG=Rn.506 /LL=29179 /DEF=Rat synapsin 2a mRNA, complete cds. /PROD=synapsin 2a /FL=gb:M27925.1 M27925 synapsin II Syn2 29179 NM_001034020 /// NM_019159 0007269 // neurotransmitter secretion // not recorded /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0046928 // regulation of neurotransmitter secretion // traceable author statement 0008021 // synaptic vesicle // inferred from direct assay /// 0008021 // synaptic vesicle // traceable author statement /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // traceable author statement 1370432_at M72711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M72711.1 /DB_XREF=gi:206866 /GEN=SCIP /FEA=FLmRNA /CNT=7 /TID=Rn.11354.1 /TIER=FL /STK=3 /UG=Rn.11354 /LL=29588 /UG_TITLE=POU domain, class 3, transcription factor 2 /DEF=Rat transcriptional repressor of myelin-specific genes (SCIP) mRNA, complete cds. /FL=gb:M72711.1 M72711 POU class 3 homeobox 1 Pou3f1 192110 NM_138838 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008544 // epidermis development // not recorded /// 0010001 // glial cell differentiation // inferred from direct assay /// 0010628 // positive regulation of gene expression // not recorded /// 0010628 // positive regulation of gene expression // inferred from sequence or structural similarity /// 0014044 // Schwann cell development // not recorded /// 0022011 // myelination in peripheral nervous system // not recorded /// 0030216 // keratinocyte differentiation // not recorded /// 0030900 // forebrain development // not recorded /// 0042552 // myelination // not recorded /// 0045449 // regulation of transcription // traceable author statement /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from direct assay /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from direct assay /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1370433_at AB000199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB000199.1 /DB_XREF=gi:2563998 /GEN=cca2 /FEA=FLmRNA /CNT=6 /TID=Rn.11380.1 /TIER=FL /STK=3 /UG=Rn.11380 /DEF=Rattus norvegicus cca2 mRNA, complete cds. /PROD=CCA2 protein /FL=gb:AB000199.1 AB000199 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 Hsd3b7 246211 NM_139329 0001558 // regulation of cell growth // inferred from direct assay /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008206 // bile acid metabolic process // traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003854 // 3-beta-hydroxy-delta5-steroid dehydrogenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0047016 // cholest-5-ene-3-beta,7-alpha-diol 3-beta-dehydrogenase activity // inferred from direct assay /// 0047016 // cholest-5-ene-3-beta,7-alpha-diol 3-beta-dehydrogenase activity // inferred from electronic annotation 1370434_a_at X89638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X89638.1 /DB_XREF=gi:1177325 /GEN=MOBP-99 /FEA=mRNA /CNT=1 /TID=Rn.7619.6 /TIER=ConsEnd /STK=0 /UG=Rn.7619 /LL=25037 /DEF=R.norvegicus mRNA for Myelin-associatedOligodendrocytic Basic Protein-99. /PROD=Myelin-associatedOligodendrocytic BasicProtein X89638 myelin-associated oligodendrocyte basic protein Mobp 25037 NM_012720 0007399 // nervous system development // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0019911 // structural constituent of myelin sheath // inferred from direct assay /// 0019911 // structural constituent of myelin sheath // not recorded /// 0019911 // structural constituent of myelin sheath // inferred from electronic annotation 1370435_a_at U58289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U58289.1 /DB_XREF=gi:1518634 /FEA=FLmRNA /CNT=5 /TID=Rn.31808.2 /TIER=FL /STK=3 /UG=Rn.31808 /LL=54250 /UG_GENE=Fgf2 /DEF=Rattus norvegicus antisense basic fibroblast growth factor GFG mRNA, complete cds. /PROD=antisense basic fibroblast growth factor GFG /FL=gb:U58289.1 U58289 nudix (nucleoside diphosphate linked moiety X)-type motif 6 Nudt6 207120 NM_181363 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation 1370436_at AF062389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF062389.1 /DB_XREF=gi:3127192 /GEN=KS /FEA=FLmRNA /CNT=7 /TID=Rn.14875.1 /TIER=FL /STK=3 /UG=Rn.14875 /DEF=Rattus norvegicus kidney-specific protein (KS) mRNA, complete cds. /PROD=kidney-specific protein /FL=gb:AF062389.1 AF062389 acyl-CoA synthetase medium-chain family member 2 Acsm2 246263 NM_144748 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047760 // butyrate-CoA ligase activity // inferred from electronic annotation 1370437_at U63839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U63839.1 /DB_XREF=gi:1537067 /FEA=FLmRNA /CNT=6 /TID=Rn.11099.1 /TIER=FL /STK=3 /UG=Rn.11099 /DEF=Rattus norvegicus nucleoporin p58 mRNA, complete cds. /PROD=nucleoporin p58 /FL=gb:U63839.1 U63839 nucleoporin like 1 Nupl1 245922 NM_139091 0006810 // transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005643 // nuclear pore // inferred from direct assay /// 0005643 // nuclear pore // non-traceable author statement /// 0005643 // nuclear pore // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0005487 // nucleocytoplasmic transporter activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1370438_at AF037071 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF037071.1 /DB_XREF=gi:2961528 /FEA=FLmRNA /CNT=6 /TID=Rn.9903.1 /TIER=FL /STK=3 /UG=Rn.9903 /DEF=Rattus norvegicus carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase mRNA, complete cds. /PROD=carboxyl-terminal PDZ ligand of neuronal nitricoxide synthase /FL=gb:AF037071.1 AF037071 nitric oxide synthase 1 (neuronal) adaptor protein Nos1ap 192363 NM_138922 0007269 // neurotransmitter secretion // non-traceable author statement /// 0050999 // regulation of nitric-oxide synthase activity // inferred by curator 0005737 // cytoplasm // non-traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0030165 // PDZ domain binding // inferred from direct assay /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0050998 // nitric-oxide synthase binding // inferred from direct assay /// 0050998 // nitric-oxide synthase binding // inferred from physical interaction 1370439_a_at M34052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M34052.1 /DB_XREF=gi:206913 /GEN=KShIIIa /FEA=FLmRNA /CNT=4 /TID=Rn.9733.1 /TIER=FL /STK=3 /UG=Rn.9733 /DEF=Rat K+ channel protein (KShIIIA) mRNA, complete cds. /PROD=K+ channel protein /FL=gb:M34052.1 M34052 potassium voltage gated channel, Shaw-related subfamily, member 2 Kcnc2 246153 NM_139216 /// NM_139217 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1370440_at AB000280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB000280.1 /DB_XREF=gi:2208838 /GEN=PHT1 /FEA=FLmRNA /CNT=4 /TID=Rn.10770.1 /TIER=FL /STK=3 /UG=Rn.10770 /DEF=Rattus norvegicus mRNA for peptidehistidine transporter, complete cds. /PROD=peptidehistidine transporter /FL=gb:AB000280.1 AB000280 solute carrier family 15, member 4 Slc15a4 246280 NM_144758 0006810 // transport // inferred from electronic annotation /// 0006857 // oligopeptide transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0015817 // histidine transport // inferred from mutant phenotype /// 0015833 // peptide transport // inferred from electronic annotation 0005765 // lysosomal membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005290 // L-histidine transmembrane transporter activity // inferred from mutant phenotype /// 0015293 // symporter activity // inferred from electronic annotation /// 0015333 // peptide:hydrogen symporter activity // not recorded 1370441_at AB019791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB019791.1 /DB_XREF=gi:5821226 /GEN=PLP-H /FEA=FLmRNA /CNT=4 /TID=Rn.22898.1 /TIER=FL /STK=3 /UG=Rn.22898 /DEF=Rattus norvegicus PLP-H mRNA for prolactin-like protein H, complete cds. /PROD=prolactin-like protein H /FL=gb:AB019791.1 AB019791 Prolactin family 3, subfamily a, member 1 Prl3a1 266782 NM_153736 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation 1370442_at U25684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U25684.1 /DB_XREF=gi:1695769 /FEA=FLmRNA /CNT=4 /TID=Rn.10627.1 /TIER=FL /STK=3 /UG=Rn.10627 /UG_TITLE=Rattus norvegicus thymosin beta-like protein mRNA, complete cds /DEF=Rattus norvegicus thymosin beta-like protein mRNA, complete cds. /FL=gb:U25684.1 U25684 thymosin beta-like protein 1 Tmsbl1 286978 NM_173313 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0042989 // sequestering of actin monomers // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation 1370443_at AF178975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF178975.1 /DB_XREF=gi:6470132 /FEA=FLmRNA /CNT=5 /TID=Rn.9509.1 /TIER=FL /STK=3 /UG=Rn.9509 /LL=171575 /UG_GENE=Dnase2 /DEF=Rattus norvegicus deoxyribonuclease II mRNA, complete cds. /PROD=deoxyribonuclease II /FL=gb:AF178975.1 AF178975 deoxyribonuclease II alpha Dnase2a 171575 NM_138539 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006308 // DNA catabolic process // inferred from electronic annotation /// 0006308 // DNA catabolic process // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // not recorded 0005764 // lysosome // inferred from electronic annotation 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004520 // endodeoxyribonuclease activity // inferred from direct assay /// 0004531 // deoxyribonuclease II activity // inferred from electronic annotation /// 0004531 // deoxyribonuclease II activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1370444_at AF055477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF055477.1 /DB_XREF=gi:3403206 /FEA=FLmRNA /CNT=4 /TID=Rn.30066.2 /TIER=FL /STK=3 /UG=Rn.30066 /LL=29716 /UG_GENE=Cacna1d /DEF=Rattus norvegicus pore-forming calcium channel alpha-1B subunit variant a mRNA, alternatively spliced product, complete cds. /PROD=pore-forming calcium channel alpha-1B subunitvariant a /FL=gb:AF055477.1 gb:M92905.1 AF055477 calcium channel, voltage-dependent, N type, alpha 1B subunit Cacna1b 257648 NM_001195199 /// NM_147141 0001956 // positive regulation of neurotransmitter secretion // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from mutant phenotype /// 0006816 // calcium ion transport // not recorded /// 0007269 // neurotransmitter secretion // not recorded /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0008016 // regulation of heart contraction // not recorded /// 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0008217 // regulation of blood pressure // not recorded /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0033574 // response to testosterone stimulus // inferred from mutant phenotype /// 0045471 // response to ethanol // inferred from expression pattern /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // not recorded 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005891 // voltage-gated calcium channel complex // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030425 // dendrite // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043025 // neuronal cell body // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043198 // dendritic shaft // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from mutant phenotype /// 0005245 // voltage-gated calcium channel activity // not recorded /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded 1370445_at D88666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D88666.1 /DB_XREF=gi:1817555 /FEA=FLmRNA /CNT=4 /TID=Rn.10696.1 /TIER=FL /STK=3 /UG=Rn.10696 /DEF=Rattus norvegicus mRNA for PS-PLA1, complete cds. /PROD=PS-PLA1 /FL=gb:D88666.1 D88666 phospholipase A1 member A Pla1a 85311 NM_138882 0006629 // lipid metabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1370446_at AF202049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF202049.1 /DB_XREF=gi:6644104 /GEN=Nm23-R7 /FEA=FLmRNA /CNT=4 /TID=Rn.82718.1 /TIER=FL /STK=3 /UG=Rn.82718 /LL=171566 /DEF=Rattus norvegicus NM23-R7 (Nm23-R7) mRNA, complete cds. /PROD=NM23-R7 /FL=gb:AF202049.1 AF202049 non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase) Nme7 171566 NM_138532 0006183 // GTP biosynthetic process // inferred from electronic annotation /// 0006228 // UTP biosynthetic process // inferred from electronic annotation /// 0006241 // CTP biosynthetic process // inferred from electronic annotation /// 0009117 // nucleotide metabolic process // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004550 // nucleoside diphosphate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370447_at D63648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D63648.1 /DB_XREF=gi:2696235 /FEA=FLmRNA /CNT=3 /TID=Rn.10866.1 /TIER=FL /STK=3 /UG=Rn.10866 /DEF=Rattus norvegicus mRNA for phospholipase B, complete cds. /PROD=phospholipase B /FL=gb:D63648.1 D63648 phospholipase B1 Plb1 192259 NM_138898 0006629 // lipid metabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation 0004622 // lysophospholipase activity // inferred from electronic annotation /// 0004623 // phospholipase A2 activity // inferred from electronic annotation /// 0016298 // lipase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation 1370448_at L20468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L20468.1 /DB_XREF=gi:440126 /FEA=FLmRNA /CNT=3 /TID=Rn.10764.1 /TIER=FL /STK=3 /UG=Rn.10764 /LL=171517 /UG_GENE=Gpc2 /DEF=Rattus norvegicus cerebroglycan mRNA, complete cds. /PROD=cerebroglycan /FL=gb:L20468.1 L20468 glypican 2 Gpc2 171517 NM_138511 0030182 // neuron differentiation // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0043395 // heparan sulfate proteoglycan binding // inferred from electronic annotation 1370449_at U76206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U76206.1 /DB_XREF=gi:2459584 /FEA=FLmRNA /CNT=3 /TID=Rn.25760.1 /TIER=FL /STK=3 /UG=Rn.25760 /LL=171108 /UG_GENE=LOC171108 /DEF=Rattus norvegicus VTR 15-20 receptor mRNA, complete cds. /PROD=VTR 15-20 receptor /FL=gb:U76206.1 U76206 purinergic receptor P2Y, G-protein coupled, 14 P2ry14 171108 NM_133577 0006955 // immune response // inferred from mutant phenotype /// 0006955 // immune response // non-traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // non-traceable author statement /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0045028 // purinergic nucleotide receptor activity, G-protein coupled // inferred from electronic annotation 1370450_at L24777 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L24777.1 /DB_XREF=gi:438881 /GEN=TPM-gamma /FEA=FLmRNA /CNT=3 /TID=Rn.37575.2 /TIER=FL /STK=3 /UG=Rn.37575 /LL=117557 /DEF=Rattus norvegicus tropomyosin non-muscle isoform NM4 (TPM-gamma) mRNA, complete cds. /PROD=tropomyosin /FL=gb:L24777.1 L24777 tropomyosin 3, gamma Tpm3 117557 NM_057208 /// NM_173111 0007420 // brain development // inferred from expression pattern 0002102 // podosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1370451_a_at AF394940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF394940.1 /DB_XREF=gi:17864839 /FEA=FLmRNA /CNT=5 /TID=Rn.9827.1 /TIER=FL /STK=3 /UG=Rn.9827 /LL=24239 /UG_GENE=Cacna1c /DEF=Rattus norvegicus clone 12 L-type calcium channel alpha-1c subunit mRNA, complete cds, alternatively spliced. /PROD=L-type calcium channel alpha-1c subunit /FL=gb:M59786.1 gb:AF394939.1 gb:AF394938.1 gb:AF394940.1 AF394940 calcium channel, voltage-dependent, L type, alpha 1C subunit Cacna1c 24239 NM_012517 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from mutant phenotype /// 0006816 // calcium ion transport // not recorded /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006939 // smooth muscle contraction // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007268 // synaptic transmission // not recorded /// 0007628 // adult walking behavior // not recorded /// 0008217 // regulation of blood pressure // not recorded /// 0008542 // visual learning // not recorded /// 0017156 // calcium ion-dependent exocytosis // not recorded /// 0019229 // regulation of vasoconstriction // not recorded /// 0030073 // insulin secretion // not recorded /// 0030252 // growth hormone secretion // not recorded /// 0042593 // glucose homeostasis // not recorded /// 0046620 // regulation of organ growth // not recorded /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060083 // smooth muscle contraction involved in micturition // not recorded /// 0070588 // calcium ion transmembrane transport // not recorded 0002095 // caveolar macromolecular signaling complex // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // inferred from direct assay /// 0005891 // voltage-gated calcium channel complex // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // not recorded /// 0005891 // voltage-gated calcium channel complex // traceable author statement /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // not recorded /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0030018 // Z disc // inferred from direct assay /// 0030315 // T-tubule // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0042383 // sarcolemma // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043025 // neuronal cell body // not recorded /// 0043198 // dendritic shaft // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from direct assay /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from mutant phenotype /// 0005245 // voltage-gated calcium channel activity // not recorded /// 0005245 // voltage-gated calcium channel activity // traceable author statement /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0051721 // protein phosphatase 2A binding // inferred from physical interaction 1370452_at M59786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M59786.1 /DB_XREF=gi:1162965 /FEA=FLmRNA /CNT=5 /TID=Rn.9827.1 /TIER=FL /STK=2 /UG=Rn.9827 /LL=24239 /UG_GENE=Cacna1c /DEF=Rat dihydropryridine-sensitive calcium channel alpha-1 subunit gene, complete cds. /PROD=dihydropryridine-sensitive calcium channelalpha-1 subunit /FL=gb:M59786.1 gb:AF394939.1 gb:AF394938.1 gb:AF394940.1 M59786 calcium channel, voltage-dependent, L type, alpha 1C subunit Cacna1c 24239 NM_012517 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from mutant phenotype /// 0006816 // calcium ion transport // not recorded /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006939 // smooth muscle contraction // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007268 // synaptic transmission // not recorded /// 0007628 // adult walking behavior // not recorded /// 0008217 // regulation of blood pressure // not recorded /// 0008542 // visual learning // not recorded /// 0017156 // calcium ion-dependent exocytosis // not recorded /// 0019229 // regulation of vasoconstriction // not recorded /// 0030073 // insulin secretion // not recorded /// 0030252 // growth hormone secretion // not recorded /// 0042593 // glucose homeostasis // not recorded /// 0046620 // regulation of organ growth // not recorded /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060083 // smooth muscle contraction involved in micturition // not recorded /// 0070588 // calcium ion transmembrane transport // not recorded 0002095 // caveolar macromolecular signaling complex // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // inferred from direct assay /// 0005891 // voltage-gated calcium channel complex // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // not recorded /// 0005891 // voltage-gated calcium channel complex // traceable author statement /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // not recorded /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0030018 // Z disc // inferred from direct assay /// 0030315 // T-tubule // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0042383 // sarcolemma // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043025 // neuronal cell body // not recorded /// 0043198 // dendritic shaft // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from direct assay /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from mutant phenotype /// 0005245 // voltage-gated calcium channel activity // not recorded /// 0005245 // voltage-gated calcium channel activity // traceable author statement /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0051721 // protein phosphatase 2A binding // inferred from physical interaction 1370453_at AF347056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF347056.1 /DB_XREF=gi:14289366 /FEA=FLmRNA /CNT=4 /TID=Rn.27161.1 /TIER=FL /STK=3 /UG=Rn.27161 /DEF=Rattus norvegicus glycoprotein TEC-21 mRNA, complete cds. /PROD=glycoprotein TEC-21 /FL=gb:AF347056.1 AF347056 testis expressed 101 Tex101 207113 NM_139037 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from mutant phenotype 1370454_at AB003726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB003726.1 /DB_XREF=gi:2516236 /GEN=vesl /FEA=FLmRNA /CNT=4 /TID=Rn.37500.3 /TIER=FL /STK=3 /UG=Rn.37500 /LL=65137 /DEF=Rattus norvegicus mRNA for Vesl, complete cds. /PROD=Vesl /FL=gb:AB003726.1 gb:U92079.1 AB003726 homer homolog 1 (Drosophila) Homer1 29546 NM_031707 0003009 // skeletal muscle contraction // not recorded /// 0006950 // response to stress // inferred from expression pattern /// 0007216 // metabotropic glutamate receptor signaling pathway // inferred from direct assay /// 0007623 // circadian rhythm // inferred from expression pattern /// 0032236 // positive regulation of calcium ion transport via store-operated calcium channel activity // not recorded /// 0035094 // response to nicotine // inferred from expression pattern /// 0042220 // response to cocaine // inferred from expression pattern /// 0048741 // skeletal muscle fiber development // not recorded 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030018 // Z disc // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043034 // costamere // not recorded /// 0043198 // dendritic shaft // inferred from direct assay /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0060076 // excitatory synapse // inferred from direct assay 0005102 // receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0031802 // type 5 metabotropic glutamate receptor binding // inferred from physical interaction /// 0035256 // metabotropic glutamate receptor binding // inferred from physical interaction 1370455_a_at AF442822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF442822.1 /DB_XREF=gi:19386925 /FEA=FLmRNA /CNT=4 /TID=Rn.27711.1 /TIER=FL /STK=3 /UG=Rn.27711 /DEF=Rattus norvegicus optimedin form B mRNA, complete cds; alternatively spliced. /PROD=optimedin form B /FL=gb:AF442822.1 AF442822 olfactomedin 3 Olfm3 252920 NM_145777 0042462 // eye photoreceptor cell development // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370456_at AB076401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB076401.1 /DB_XREF=gi:19773542 /GEN=fat3 /FEA=FLmRNA /CNT=3 /TID=Rn.59156.1 /TIER=FL /STK=3 /UG=Rn.59156 /DEF=Rattus norvegicus mRNA for fat3, complete cds. /PROD=fat3 /FL=gb:AB076401.1 AB076401 FAT tumor suppressor homolog 3 (Drosophila) Fat3 191571 NM_138544 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1370457_at U16858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U16858.1 /DB_XREF=gi:577429 /FEA=FLmRNA /CNT=3 /TID=Rn.10029.1 /TIER=FL /STK=3 /UG=Rn.10029 /DEF=Rattus norvegicus testin mRNA, complete cds. /PROD=testin /FL=gb:U16858.1 U16858 testin gene Testin 286916 NM_173132 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0030054 // cell junction // inferred from direct assay 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation 1370458_at AF389347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF389347.1 /DB_XREF=gi:14718637 /GEN=Hrp3 /FEA=FLmRNA /CNT=27 /TID=Rn.17383.1 /TIER=FL /STK=2 /UG=Rn.17383 /DEF=Rattus norvegicus HRP3 (Hrp3) mRNA, complete cds. /PROD=HRP3 /FL=gb:AF389347.1 AF389347 hepatoma-derived growth factor, related protein 3 Hdgfrp3 252941 NM_145785 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0008083 // growth factor activity // inferred from electronic annotation 1370459_at AY007690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY007690.1 /DB_XREF=gi:15822514 /FEA=FLmRNA /CNT=13 /TID=Rn.38451.1 /TIER=FL /STK=2 /UG=Rn.38451 /DEF=Rattus norvegicus A5D3 protein mRNA, complete cds. /PROD=A5D3 protein /FL=gb:AY007690.1 AY007690 alanine and arginine rich domain containing protein Aard 246323 NM_145093 0030324 // lung development // inferred from expression pattern 1370460_at AF106657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF106657.1 /DB_XREF=gi:6492121 /GEN=ubp109 /FEA=FLmRNA /CNT=15 /TID=Rn.17325.1 /TIER=FL /STK=2 /UG=Rn.17325 /DEF=Rattus norvegicus deubiquitinating enzyme Ubp109 (ubp109) mRNA, complete cds. /PROD=deubiquitinating enzyme Ubp109 /FL=gb:AF106657.1 AF106657 ubiquitin specific peptidase 15 Usp15 171329 NM_145184 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0016579 // protein deubiquitination // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0004843 // ubiquitin-specific protease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1370461_at AF336825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF336825.1 /DB_XREF=gi:13398479 /FEA=FLmRNA /CNT=13 /TID=Rn.64571.1 /TIER=FL /STK=2 /UG=Rn.64571 /LL=25460 /UG_GENE=Hmmr /DEF=Rattus norvegicus hyaluronan receptor RHAMM mRNA, complete cds. /PROD=hyaluronan receptor RHAMM /FL=gb:AF133037.1 gb:AF336825.1 AF336825 hyaluronan mediated motility receptor (RHAMM) Hmmr 25460 NM_012964 0007010 // cytoskeleton organization // non-traceable author statement /// 0007267 // cell-cell signaling // non-traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // traceable author statement /// 0005540 // hyaluronic acid binding // inferred from electronic annotation 1370462_at AI171185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171185 /DB_XREF=gi:3711225 /DB_XREF=EST217137 /CLONE=RMUBH29 /FEA=FLmRNA /CNT=13 /TID=Rn.64571.1 /TIER=ConsEnd /STK=1 /UG=Rn.64571 /LL=25460 /UG_GENE=Hmmr /UG_TITLE=Hyaluronan mediated motility receptor (RHAMM) /FL=gb:AF133037.1 gb:AF336825.1 AI171185 hyaluronan mediated motility receptor (RHAMM) Hmmr 25460 NM_012964 0007010 // cytoskeleton organization // non-traceable author statement /// 0007267 // cell-cell signaling // non-traceable author statement 0004872 // receptor activity // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // traceable author statement 1370463_x_at U50449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U50449.1 /DB_XREF=gi:1794200 /GEN=RT1.A(n) /FEA=FLmRNA /CNT=10 /TID=Rn.29434.2 /TIER=FL /STK=2 /UG=Rn.29434 /LL=58983 /DEF=Rattus norvegicus clone 109 class I MHC heavy chain RT1.A(n) antigen precursor (RT1.A(n)) mRNA, complete cds. /PROD=class I MHC heavy chain RT1.A(n) antigenprecursor /FL=gb:U50449.1 U50449 RT1 class I, locus CE16 RT1-CE16 414819 NM_001008839 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 1370464_at AF286167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF286167.1 /DB_XREF=gi:15077003 /GEN=Mdr1a /FEA=FLmRNA /CNT=7 /TID=Rn.54380.1 /TIER=FL /STK=2 /UG=Rn.54380 /LL=170913 /DEF=Rattus norvegicus P-glycoprotein (Mdr1a) mRNA, complete cds. /PROD=P-glycoprotein /FL=gb:AF257746.1 gb:AF286167.1 AF286167 ATP-binding cassette, sub-family B (MDR/TAP), member 1A Abcb1a 170913 NM_133401 0006200 // ATP catabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006855 // drug transmembrane transport // inferred from direct assay /// 0007595 // lactation // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0015893 // drug transport // not recorded /// 0033280 // response to vitamin D // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0055085 // transmembrane transport // inferred from electronic annotation 0009986 // cell surface // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0046581 // intercellular canaliculus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042623 // ATPase activity, coupled // not recorded /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 1370465_at AF257746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF257746.1 /DB_XREF=gi:7739772 /GEN=Pgy1 /FEA=FLmRNA /CNT=7 /TID=Rn.54380.1 /TIER=FL /STK=1 /UG=Rn.54380 /LL=170913 /DEF=Rattus norvegicus multidrug resistance protein 1a (Pgy1) mRNA, complete cds. /PROD=multidrug resistance protein 1a /FL=gb:AF257746.1 gb:AF286167.1 AF257746 ATP-binding cassette, sub-family B (MDR/TAP), member 1A Abcb1a 170913 NM_133401 0006200 // ATP catabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006855 // drug transmembrane transport // inferred from direct assay /// 0007595 // lactation // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0015893 // drug transport // not recorded /// 0033280 // response to vitamin D // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0055085 // transmembrane transport // inferred from electronic annotation 0009986 // cell surface // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0046581 // intercellular canaliculus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042623 // ATPase activity, coupled // not recorded /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 1370466_at L35572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L35572.1 /DB_XREF=gi:531219 /GEN=lim-2 /FEA=FLmRNA /CNT=7 /TID=Rn.54653.1 /TIER=FL /STK=2 /UG=Rn.54653 /UG_TITLE=Rattus norvegicus (clone 1.9kB) lim-2 mRNA, complete cds /DEF=Rattus norvegicus (clone 1.9kB) lim-2 mRNA, complete cds. /FL=gb:L35572.1 L35572 LIM homeobox 5 Lhx5 124451 NM_139036 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0021549 // cerebellum development // inferred from electronic annotation /// 0021549 // cerebellum development // not recorded /// 0021702 // cerebellar Purkinje cell differentiation // inferred from electronic annotation /// 0021702 // cerebellar Purkinje cell differentiation // not recorded /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0021846 // cell proliferation in forebrain // inferred from electronic annotation /// 0021846 // cell proliferation in forebrain // not recorded /// 0021879 // forebrain neuron differentiation // inferred from electronic annotation /// 0021879 // forebrain neuron differentiation // not recorded /// 0021937 // cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation // inferred from electronic annotation /// 0021937 // cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370467_at L19102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L19102.1 /DB_XREF=gi:310182 /FEA=FLmRNA /CNT=10 /TID=Rn.9699.1 /TIER=FL /STK=2 /UG=Rn.9699 /LL=58980 /UG_GENE=Slc13a1 /DEF=Rat sodium dependent sulfate transporter mRNA, complete cds. /PROD=sodium dependent sulfate transporter /FL=gb:L19102.1 L19102 solute carrier family 13 (sodium/sulfate symporters), member 1 Slc13a1 58980 NM_031651 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0008272 // sulfate transport // inferred from direct assay /// 0008272 // sulfate transport // not recorded /// 0008272 // sulfate transport // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0008271 // secondary active sulfate transmembrane transporter activity // not recorded /// 0008271 // secondary active sulfate transmembrane transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0015382 // sodium:sulfate symporter activity // inferred from direct assay /// 0015382 // sodium:sulfate symporter activity // not recorded 1370468_at AI454619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454619 /DB_XREF=gi:4294993 /DB_XREF=UI-R-A0-ar-e-04-0-UI.s1 /CLONE=UI-R-A0-ar-e-04-0-UI /FEA=FLmRNA /CNT=10 /TID=Rn.9699.1 /TIER=ConsEnd /STK=0 /UG=Rn.9699 /LL=58980 /UG_GENE=Slc13a1 /UG_TITLE=solute carrier family 13 (sodiumsulphate symporters), member 1 /FL=gb:L19102.1 AI454619 solute carrier family 13 (sodium/sulfate symporters), member 1 Slc13a1 58980 NM_031651 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0008272 // sulfate transport // inferred from direct assay /// 0008272 // sulfate transport // not recorded /// 0008272 // sulfate transport // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0008271 // secondary active sulfate transmembrane transporter activity // not recorded /// 0008271 // secondary active sulfate transmembrane transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0015382 // sodium:sulfate symporter activity // inferred from direct assay /// 0015382 // sodium:sulfate symporter activity // not recorded 1370469_at U28356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U28356.1 /DB_XREF=gi:886816 /FEA=FLmRNA /CNT=5 /TID=Rn.10160.1 /TIER=FL /STK=2 /UG=Rn.10160 /DEF=Rattus norvegicus cytosolic protein tyrosine phosphatase HePTPLC-PTP mRNA, complete cds. /PROD=cytosolic protein tyrosine phosphatase /FL=gb:U28356.1 U28356 protein tyrosine phosphatase, non-receptor type 7 Ptpn7 246781 NM_145683 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1370470_at U16684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U16684.1 /DB_XREF=gi:1041806 /FEA=FLmRNA /CNT=5 /TID=Rn.10222.1 /TIER=FL /STK=2 /UG=Rn.10222 /DEF=Rattus norvegicus defensin RatNP-4 precursor mRNA, complete cds. /PROD=defensin RatNP-4 precursor /FL=gb:U16684.1 U16684 defensin NP-4 precursor Np4 286958 NM_173299 0006952 // defense response // traceable author statement /// 0006952 // defense response // inferred from electronic annotation /// 0031640 // killing of cells of another organism // inferred from electronic annotation /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0050832 // defense response to fungus // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement 1370471_at M31155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M31155.1 /DB_XREF=gi:206234 /FEA=FLmRNA /CNT=5 /TID=Rn.54426.1 /TIER=FL /STK=2 /UG=Rn.54426 /LL=24657 /UG_GENE=Prlpb /UG_TITLE=Prolactin-like protein B /DEF=Rat prolactin-like protein B mRNA, complete cds. /FL=gb:M31155.1 M31155 prolactin family 6, subfamily a, member 1 Prl6a1 24657 NM_022176 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation 1370472_a_at AF135265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF135265.1 /DB_XREF=gi:4972781 /GEN=slo /FEA=FLmRNA /CNT=5 /TID=Rn.10280.2 /TIER=FL /STK=2 /UG=Rn.10280 /LL=83731 /DEF=Rattus norvegicus large-conductance calcium-activated potassium channel (slo) mRNA, complete cds. /PROD=large-conductance calcium-activated potassiumchannel /FL=gb:AF135265.1 AF135265 potassium large conductance calcium-activated channel, subfamily M, alpha member 1 Kcnma1 83731 NM_031828 0001666 // response to hypoxia // inferred from direct assay /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // not recorded /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006970 // response to osmotic stress // not recorded /// 0006970 // response to osmotic stress // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007623 // circadian rhythm // not recorded /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0007628 // adult walking behavior // not recorded /// 0007628 // adult walking behavior // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009268 // response to pH // inferred from direct assay /// 0019228 // regulation of action potential in neuron // not recorded /// 0019228 // regulation of action potential in neuron // inferred from electronic annotation /// 0030007 // cellular potassium ion homeostasis // not recorded /// 0030007 // cellular potassium ion homeostasis // inferred from electronic annotation /// 0031960 // response to corticosteroid stimulus // inferred from direct assay /// 0032344 // regulation of aldosterone metabolic process // not recorded /// 0032344 // regulation of aldosterone metabolic process // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0034465 // response to carbon monoxide // not recorded /// 0034465 // response to carbon monoxide // inferred from electronic annotation /// 0034765 // regulation of ion transmembrane transport // not recorded /// 0042311 // vasodilation // not recorded /// 0042311 // vasodilation // inferred from electronic annotation /// 0042312 // regulation of vasodilation // inferred from direct assay /// 0042391 // regulation of membrane potential // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042491 // auditory receptor cell differentiation // not recorded /// 0042491 // auditory receptor cell differentiation // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0045475 // locomotor rhythm // not recorded /// 0045475 // locomotor rhythm // inferred from electronic annotation /// 0045794 // negative regulation of cell volume // not recorded /// 0045794 // negative regulation of cell volume // inferred from electronic annotation /// 0046541 // saliva secretion // not recorded /// 0046541 // saliva secretion // inferred from electronic annotation /// 0048469 // cell maturation // not recorded /// 0048469 // cell maturation // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from direct assay /// 0051592 // response to calcium ion // not recorded /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060073 // micturition // not recorded /// 0060073 // micturition // inferred from electronic annotation /// 0060082 // eye blink reflex // not recorded /// 0060082 // eye blink reflex // inferred from electronic annotation /// 0060083 // smooth muscle contraction involved in micturition // not recorded /// 0060083 // smooth muscle contraction involved in micturition // inferred from electronic annotation /// 0060087 // relaxation of vascular smooth muscle // not recorded /// 0060087 // relaxation of vascular smooth muscle // inferred from electronic annotation 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0005901 // caveola // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // not recorded /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0043195 // terminal button // not recorded /// 0043195 // terminal button // inferred from electronic annotation /// 0044444 // cytoplasmic part // not recorded /// 0044444 // cytoplasmic part // inferred from electronic annotation /// 0045211 // postsynaptic membrane // not recorded /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048787 // presynaptic active zone membrane // inferred from direct assay 0003779 // actin binding // not recorded /// 0003779 // actin binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // not recorded /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // not recorded /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0015269 // calcium-activated potassium channel activity // inferred from direct assay /// 0015269 // calcium-activated potassium channel activity // not recorded /// 0015269 // calcium-activated potassium channel activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0060072 // large conductance calcium-activated potassium channel activity // not recorded /// 0060072 // large conductance calcium-activated potassium channel activity // inferred from electronic annotation 1370473_a_at AF077000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF077000.1 /DB_XREF=gi:3598973 /GEN=PTP-TD14 /FEA=FLmRNA /CNT=4 /TID=Rn.54442.1 /TIER=FL /STK=2 /UG=Rn.54442 /LL=117552 /DEF=Rattus norvegicus protein tyrosine phosphatase TD14 (PTP-TD14) mRNA, complete cds. /PROD=protein tyrosine phosphatase TD14 /FL=gb:AF077000.1 AF077000 protein tyrosine phosphatase, non-receptor type 23 Ptpn23 117552 NM_057204 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1370474_at J03819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J03819.1 /DB_XREF=gi:623566 /GEN=erb62 /FEA=FLmRNA /CNT=4 /TID=Rn.10018.1 /TIER=FL /STK=2 /UG=Rn.10018 /LL=24831 /DEF=Rattus norvegicus (clone erb62) thyroid (T3) hormone receptor mRNA, complete cds. /PROD=thyroid hormone receptor /FL=gb:J03933.1 gb:J03819.1 J03819 thyroid hormone receptor beta Thrb 24831 NM_012672 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007621 // negative regulation of female receptivity // not recorded /// 0007621 // negative regulation of female receptivity // inferred from electronic annotation /// 0008016 // regulation of heart contraction // not recorded /// 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0008050 // female courtship behavior // not recorded /// 0008050 // female courtship behavior // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0019216 // regulation of lipid metabolic process // inferred from direct assay /// 0032332 // positive regulation of chondrocyte differentiation // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045778 // positive regulation of ossification // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048568 // embryonic organ development // inferred from expression pattern /// 0090181 // regulation of cholesterol metabolic process // inferred from mutant phenotype /// 0090207 // regulation of triglyceride metabolic process // inferred from mutant phenotype 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // traceable author statement /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0004887 // thyroid hormone receptor activity // inferred from direct assay /// 0004887 // thyroid hormone receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370475_at M20406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M20406.1 /DB_XREF=gi:203683 /FEA=FLmRNA /CNT=4 /TID=Rn.4845.1 /TIER=FL /STK=2 /UG=Rn.4845 /UG_TITLE=Rat cytochrome P450IIB3 (P450IIB subfamily) mRNA, complete cds /DEF=Rat cytochrome P450IIB3 (P450IIB subfamily) mRNA, complete cds. /FL=gb:M20406.1 M20406 cytochrome P450, family 2, subfamily b, polypeptide 3 Cyp2b3 286953 NM_173294 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // traceable author statement /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1370476_at AY083159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY083159.1 /DB_XREF=gi:19743767 /FEA=FLmRNA /CNT=4 /TID=Rn.14662.1 /TIER=FL /STK=2 /UG=Rn.14662 /DEF=Rattus norvegicus AMSH mRNA, complete cds. /PROD=AMSH /FL=gb:AY083159.1 AY083159 Stam binding protein Stambp 171565 NM_138531 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370477_at J02705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J02705.1 /DB_XREF=gi:205847 /FEA=FLmRNA /CNT=3 /TID=Rn.9719.1 /TIER=FL /STK=2 /UG=Rn.9719 /LL=25503 /UG_GENE=Ocm /UG_TITLE=Oncomodulin /DEF=Rat oncomodulin mRNA, complete cds. /FL=gb:J02705.1 J02705 oncomodulin Ocm 25503 NM_012995 0005509 // calcium ion binding // inferred from electronic annotation 1370478_at AY004215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY004215.1 /DB_XREF=gi:10863772 /FEA=FLmRNA /CNT=3 /TID=Rn.48756.1 /TIER=FL /STK=2 /UG=Rn.48756 /DEF=Rattus norvegicus myosin heavy chain Myr 8b mRNA, complete cds. /PROD=myosin heavy chain Myr 8b /FL=gb:AY004215.1 AY004215 myosin XVI Myo16 192253 NM_138893 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0021549 // cerebellum development // inferred from expression pattern /// 0045749 // negative regulation of S phase of mitotic cell cycle // inferred from direct assay 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016459 // myosin complex // inferred from direct assay /// 0016459 // myosin complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction /// 0051015 // actin filament binding // inferred from direct assay 1370479_x_at J00738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J00738.1 /DB_XREF=gi:204262 /FEA=FLmRNA /CNT=3 /TID=Rn.81155.2 /TIER=FL /STK=2 /UG=Rn.81155 /LL=117104 /UG_GENE=Ppp2r2a /DEF=Rattus norvegicus submaxillary gland alpha-2u globulin mRNA, complete cds. /PROD=alpha-2u globulin /FL=gb:J00738.1 J00738 alpha-2u globulin PGCL4 Obp3 259247 NM_001033958 /// NM_001033959 /// NM_147215 0006810 // transport // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005549 // odorant binding // inferred from direct assay /// 0005550 // pheromone binding // inferred from electronic annotation 1370480_at AF226607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF226607.1 /DB_XREF=gi:9622995 /FEA=FLmRNA /CNT=5 /TID=Rn.18140.1 /TIER=FL /STK=2 /UG=Rn.18140 /LL=171556 /UG_GENE=Prlpl /DEF=Rattus norvegicus prolactin-like protein L mRNA, complete cds. /PROD=prolactin-like protein L /FL=gb:AB022883.1 gb:AF226607.1 AF226607 prolactin family 5, subfamily a, member 1 Prl5a1 171556 NM_138527 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation /// 0005179 // hormone activity // traceable author statement 1370481_at X77933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X77933.1 /DB_XREF=gi:458849 /GEN=rENaC /FEA=FLmRNA /CNT=5 /TID=Rn.10360.1 /TIER=ConsEnd /STK=0 /UG=Rn.10360 /LL=24768 /DEF=R.norvegicus mRNA for sodium channel, gamma subunit. /PROD=epithelial sodium channel, gamma subunit /FL=gb:U37540.1 gb:U37539.1 X77933 sodium channel, nonvoltage-gated 1, gamma Scnn1g 24768 NM_017046 0001666 // response to hypoxia // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from mutant phenotype /// 0006814 // sodium ion transport // not recorded /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0035313 // wound healing, spreading of epidermal cells // inferred from mutant phenotype /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from mutant phenotype /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0034706 // sodium channel complex // inferred from electronic annotation /// 0034706 // sodium channel complex // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // not recorded /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0015280 // ligand-gated sodium channel activity // inferred from direct assay /// 0015280 // ligand-gated sodium channel activity // inferred from mutant phenotype /// 0015280 // ligand-gated sodium channel activity // not recorded /// 0015280 // ligand-gated sodium channel activity // inferred from electronic annotation /// 0050699 // WW domain binding // inferred from physical interaction /// 0050699 // WW domain binding // not recorded /// 0050699 // WW domain binding // inferred from electronic annotation 1370482_at U35174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U35174.1 /DB_XREF=gi:2148909 /GEN=rEnac /FEA=FLmRNA /CNT=3 /TID=Rn.9807.1 /TIER=FL /STK=2 /UG=Rn.9807 /LL=24767 /DEF=Rattus norvegicus WKY-1HD epithelial sodium channel, beta subunit (rEnac) mRNA, complete cds. /PROD=epithelial sodium channel, beta subunit /FL=gb:U35175.1 gb:U35174.1 U35174 sodium channel, nonvoltage-gated 1, beta Scnn1b 24767 NM_012648 0001666 // response to hypoxia // inferred from expression pattern /// 0002028 // regulation of sodium ion transport // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from mutant phenotype /// 0006814 // sodium ion transport // not recorded /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0035313 // wound healing, spreading of epidermal cells // inferred from mutant phenotype /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from mutant phenotype /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0034706 // sodium channel complex // inferred from electronic annotation /// 0034706 // sodium channel complex // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // not recorded /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0015280 // ligand-gated sodium channel activity // inferred from direct assay /// 0015280 // ligand-gated sodium channel activity // inferred from mutant phenotype /// 0015280 // ligand-gated sodium channel activity // not recorded /// 0015280 // ligand-gated sodium channel activity // inferred from electronic annotation /// 0050699 // WW domain binding // inferred from direct assay /// 0050699 // WW domain binding // inferred from physical interaction /// 0050699 // WW domain binding // not recorded /// 0050699 // WW domain binding // inferred from electronic annotation 1370483_at AF209406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF209406.1 /DB_XREF=gi:11494111 /FEA=FLmRNA /CNT=3 /TID=Rn.53994.2 /TIER=FL /STK=2 /UG=Rn.53994 /LL=64025 /UG_GENE=Nmrk /DEF=Rattus norvegicus NK cell receptor 2B4 mRNA, complete cds. /PROD=NK cell receptor 2B4 /FL=gb:AF209406.1 AF209406 Cd244 molecule, natural killer cell receptor 2B4 /// similar to transmembrane NK cell receptor 2B4 /// similar to transmembrane NK cell receptor 2B4 Cd244 /// LOC679046 /// LOC685808 64025 /// 679046 /// 685808 NM_022259 /// XM_001054449 /// XM_001062692 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370484_at M64392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M64392.1 /DB_XREF=gi:205845 /FEA=FLmRNA /CNT=3 /TID=Rn.44385.2 /TIER=FL /STK=2 /UG=Rn.44385 /LL=65140 /UG_GENE=Olfr41 /DEF=Rat olfactory protein mRNA, complete cds. /PROD=olfactory protein /FL=gb:M64388.1 gb:M64392.1 M64392 olfactory receptor 1466 /// olfactory receptor 1467 /// olfactory receptor 1468 /// olfactory receptor Olr1469 /// olfactory receptor 1470 /// olfactory receptor 1481 /// olfactory receptor 1482 Olr1466 /// Olr1467 /// Olr1468 /// Olr1469 /// Olr1470 /// Olr1481 /// Olr1482 287480 /// 287481 /// 287484 /// 363639 /// 404975 /// 404976 /// 404977 NM_001000024 /// NM_001000025 /// NM_001000026 /// NM_001000527 /// NM_001000723 /// NM_001000724 /// NM_212527 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from reviewed computational analysis /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050911 // detection of chemical stimulus involved in sensory perception of smell // inferred from reviewed computational analysis 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from reviewed computational analysis 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from reviewed computational analysis 1370485_a_at AF279286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF279286.1 /DB_XREF=gi:8896160 /FEA=FLmRNA /CNT=3 /TID=Rn.10323.2 /TIER=FL /STK=2 /UG=Rn.10323 /LL=24888 /UG_GENE=Bcl2l /DEF=Rattus norvegicus bcl-x short form mRNA, complete cds. /PROD=bcl-x short form /FL=gb:AF136230.1 gb:AF279286.1 AF279286 Bcl2-like 1 Bcl2l1 24888 NM_001033670 /// NM_001033671 /// NM_001033672 /// NM_031535 0001541 // ovarian follicle development // inferred from mutant phenotype /// 0001541 // ovarian follicle development // not recorded /// 0001541 // ovarian follicle development // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // not recorded /// 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0006915 // apoptosis // inferred from expression pattern /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from direct assay /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006950 // response to stress // inferred from expression pattern /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0007281 // germ cell development // not recorded /// 0007281 // germ cell development // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0008584 // male gonad development // inferred from electronic annotation /// 0009314 // response to radiation // not recorded /// 0009314 // response to radiation // inferred from electronic annotation /// 0009566 // fertilization // not recorded /// 0009566 // fertilization // inferred from electronic annotation /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010288 // response to lead ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0034097 // response to cytokine stimulus // not recorded /// 0034097 // response to cytokine stimulus // inferred from electronic annotation /// 0040007 // growth // not recorded /// 0040007 // growth // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0042981 // regulation of apoptosis // inferred from direct assay /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0045768 // positive regulation of anti-apoptosis // not recorded /// 0045768 // positive regulation of anti-apoptosis // inferred from electronic annotation /// 0046898 // response to cycloheximide // not recorded /// 0046898 // response to cycloheximide // inferred from electronic annotation /// 0046902 // regulation of mitochondrial membrane permeability // not recorded /// 0046902 // regulation of mitochondrial membrane permeability // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051881 // regulation of mitochondrial membrane potential // not recorded /// 0051881 // regulation of mitochondrial membrane potential // inferred from electronic annotation 0000299 // integral to membrane of membrane fraction // traceable author statement /// 0005622 // intracellular // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005740 // mitochondrial envelope // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005741 // mitochondrial outer membrane // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // not recorded /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0044429 // mitochondrial part // not recorded /// 0044429 // mitochondrial part // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0043027 // caspase inhibitor activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0051400 // BH domain binding // inferred from physical interaction /// 0070215 // MDM2 binding // inferred from physical interaction 1370486_a_at AY032665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY032665.1 /DB_XREF=gi:15192148 /FEA=FLmRNA /CNT=3 /TID=Rn.45119.1 /TIER=FL /STK=2 /UG=Rn.45119 /DEF=Rattus norvegicus IIIG9 long form mRNA, complete cds. /PROD=IIIG9 long form /FL=gb:AY032665.1 AY032665 IIIG9 protein Iiig9 252958 NM_145786 1370487_a_at U88156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U88156.1 /DB_XREF=gi:2317895 /FEA=FLmRNA /CNT=2 /TID=Rn.10709.2 /TIER=FL /STK=2 /UG=Rn.10709 /LL=84009 /UG_GENE=Hapip /DEF=Rattus norvegicus PAM COOH-terminal interactor protein 10b mRNA, complete cds. /PROD=PAM COOH-terminal interactor protein 10b /FL=gb:U88157.1 gb:U88156.1 U88156 kalirin, RhoGEF kinase Kalrn 84009 NM_032062 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007399 // nervous system development // inferred from direct assay /// 0007409 // axonogenesis // inferred from direct assay /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0016192 // vesicle-mediated transport // inferred from direct assay /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0050773 // regulation of dendrite development // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // traceable author statement /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370488_a_at L19181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L19181.1 /DB_XREF=gi:558131 /FEA=FLmRNA /CNT=2 /TID=Rn.25722.3 /TIER=FL /STK=2 /UG=Rn.25722 /LL=25529 /UG_GENE=Ptprd /DEF=Rat receptor-linked protein tyrosine phosphatase (PTP-PS) mRNA, complete cds. /PROD=receptor-linked protein tyrosine phosphatase /FL=gb:L19181.1 L19181 protein tyrosine phosphatase, receptor type, S Ptprs 25529 NM_019140 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1370489_a_at U57836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U57836.1 /DB_XREF=gi:4097343 /FEA=FLmRNA /CNT=2 /TID=Rn.6155.2 /TIER=FL /STK=2 /UG=Rn.6155 /LL=25031 /UG_GENE=Plcb4 /DEF=Rattus norvegicus brain phospholipase C-b4 splice variant PLC-b4b mRNA, complete cds. /PROD=PLC-b4b /FL=gb:AF031370.1 gb:U57836.1 U57836 phospholipase C, beta 4 Plcb4 25031 NM_024353 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007602 // phototransduction // non-traceable author statement /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0043267 // negative regulation of potassium ion transport // inferred from mutant phenotype 0005626 // insoluble fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005790 // smooth endoplasmic reticulum // not recorded /// 0005792 // microsome // not recorded /// 0005829 // cytosol // not recorded /// 0014069 // postsynaptic density // not recorded /// 0030425 // dendrite // not recorded 0004435 // phosphoinositide phospholipase C activity // inferred from electronic annotation /// 0004629 // phospholipase C activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0051019 // mitogen-activated protein kinase binding // inferred from physical interaction 1370490_at L43592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L43592.1 /DB_XREF=gi:1161229 /GEN=pcdh3 /FEA=FLmRNA /CNT=2 /TID=Rn.10166.1 /TIER=FL /STK=2 /UG=Rn.10166 /DEF=Rattus norvegicus protocadherin-3 (pcdh3) mRNA, complete cds. /PROD=protocadherin-3 /FL=gb:L43592.1 L43592 protocadherin beta 12 Pcdhb12 25133 NM_173099 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1370491_a_at M38759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M38759.1 /DB_XREF=gi:202629 /GEN=ABP /FEA=FLmRNA /CNT=2 /TID=Rn.48653.1 /TIER=FL /STK=2 /UG=Rn.48653 /LL=24443 /DEF=Rat androgen binding protein (ABP) mRNA, complete cds. /PROD=androgen binding protein /FL=gb:M38759.1 M38759 histidine decarboxylase Hdc 24443 NM_017016 0001692 // histamine metabolic process // inferred from direct assay /// 0006519 // cellular amino acid and derivative metabolic process // inferred from electronic annotation /// 0006547 // histidine metabolic process // inferred from direct assay /// 0006548 // histidine catabolic process // inferred from electronic annotation /// 0006548 // histidine catabolic process // not recorded /// 0007285 // primary spermatocyte growth // inferred from mutant phenotype /// 0019752 // carboxylic acid metabolic process // inferred from electronic annotation /// 0042423 // catecholamine biosynthetic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004398 // histidine decarboxylase activity // inferred from direct assay /// 0004398 // histidine decarboxylase activity // not recorded /// 0004398 // histidine decarboxylase activity // inferred from electronic annotation /// 0005496 // steroid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from direct assay /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from direct assay /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from reviewed computational analysis 1370492_a_at AF157595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF157595.1 /DB_XREF=gi:8886040 /FEA=FLmRNA /CNT=2 /TID=Rn.10239.2 /TIER=FL /STK=2 /UG=Rn.10239 /LL=54251 /UG_GENE=Flt1 /DEF=Rattus norvegicus soluble FLT-1 mRNA, complete cds. /PROD=soluble FLT-1 /FL=gb:AF157595.1 AF157595 fms-related tyrosine kinase 1 Flt1 54251 NM_019306 0000186 // activation of MAPKK activity // inferred from mutant phenotype /// 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001666 // response to hypoxia // inferred from direct assay /// 0002040 // sprouting angiogenesis // inferred from electronic annotation /// 0002040 // sprouting angiogenesis // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006940 // regulation of smooth muscle contraction // inferred from direct assay /// 0007165 // signal transduction // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // traceable author statement /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from expression pattern /// 0016310 // phosphorylation // not recorded /// 0016477 // cell migration // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030522 // intracellular receptor mediated signaling pathway // inferred from mutant phenotype /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0048010 // vascular endothelial growth factor receptor signaling pathway // not recorded /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // inferred from direct assay /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from direct assay /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004716 // receptor signaling protein tyrosine kinase activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0005021 // vascular endothelial growth factor receptor activity // inferred from mutant phenotype /// 0005021 // vascular endothelial growth factor receptor activity // not recorded /// 0005021 // vascular endothelial growth factor receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from physical interaction /// 0019838 // growth factor binding // not recorded /// 0019838 // growth factor binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1370493_a_at AF169637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF169637.1 /DB_XREF=gi:5758942 /GEN=Pir-A1 /FEA=FLmRNA /CNT=2 /TID=Rn.48719.1 /TIER=FL /STK=2 /UG=Rn.48719 /DEF=Rattus norvegicus paired Ig-like receptor-A1 (Pir-A1) mRNA, complete cds. /PROD=paired Ig-like receptor-A1 /FL=gb:AF169638.1 gb:AF169637.1 AF169637 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3-like /// similar to paired-Ig-like receptor B /// similar to paired-Ig-like receptor A11 Lilrb3l /// LOC683463 /// LOC690948 361493 /// 683463 /// 690948 NM_001037357 /// XM_001066042 /// XM_001076276 /// XM_002725500 /// XM_002725501 /// XM_002725502 1370494_at AF031642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF031642.1 /DB_XREF=gi:4104092 /GEN=UT4 /FEA=FLmRNA /CNT=2 /TID=Rn.81195.1 /TIER=FL /STK=2 /UG=Rn.81195 /LL=170564 /DEF=Rattus norvegicus kidney urea transporter (UT4) mRNA, complete cds. /PROD=urea transporter UT4 /FL=gb:AF041788.1 gb:AF031642.1 AF031642 solute carrier family 14 (urea transporter), member 2 Slc14a2 54302 NM_001110270 /// NM_019347 /// NM_177962 0006810 // transport // inferred from electronic annotation /// 0009414 // response to water deprivation // inferred from expression pattern /// 0015840 // urea transport // inferred from electronic annotation /// 0015840 // urea transport // not recorded /// 0015840 // urea transport // non-traceable author statement /// 0055085 // transmembrane transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0015204 // urea transmembrane transporter activity // inferred from electronic annotation /// 0015204 // urea transmembrane transporter activity // not recorded /// 0015204 // urea transmembrane transporter activity // non-traceable author statement 1370495_s_at J02861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J02861.1 /DB_XREF=gi:205934 /FEA=FLmRNA /CNT=2 /TID=Rn.32070.1 /TIER=FL /STK=2 /UG=Rn.32070 /LL=29297 /UG_GENE=Cyp2c38 /UG_TITLE=cytochrome P450, 2c38 /DEF=Rat polymorphic, male-specific cytochrome P-450g mRNA, complete cds. /FL=gb:M33994.1 gb:J02861.1 J02861 cytochrome P450, family 2, subfamily c, polypeptide 13 Cyp2c13 171521 NM_138514 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // traceable author statement /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1370496_at AB008424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB008424.1 /DB_XREF=gi:2575860 /GEN=CYP2D3 /FEA=FLmRNA /CNT=2 /TID=Rn.32106.1 /TIER=FL /STK=2 /UG=Rn.32106 /DEF=Rattus norvegicus mRNA for CYP2D3, complete cds. /PROD=CYP2D3 /FL=gb:J02868.1 gb:AB008424.1 AB008424 cytochrome P450, family 2, subfamily d, polypeptide 3 Cyp2d3 24303 NM_173093 0001889 // liver development // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from direct assay /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1370497_at U17082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U17082.1 /DB_XREF=gi:806755 /GEN=CYP11B3 /FEA=FLmRNA /CNT=2 /TID=Rn.54545.1 /TIER=FL /STK=2 /UG=Rn.54545 /DEF=Rattus norvegicus cytochrome P450c11B3 (CYP11B3) mRNA, complete cds. /PROD=cytochrome P450c11B3 /FL=gb:U14907.1 gb:U17082.1 U17082 cytochrome P450, family 11, subfamily b, polypeptide 3 Cyp11b3 353498 NM_181824 0001991 // regulation of systemic arterial blood pressure by circulatory renin-angiotensin // inferred from electronic annotation /// 0002017 // regulation of blood volume by renal aldosterone // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from mutant phenotype /// 0032342 // aldosterone biosynthetic process // inferred from electronic annotation /// 0042756 // drinking behavior // inferred from electronic annotation /// 0050801 // ion homeostasis // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004507 // steroid 11-beta-monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008395 // steroid hydroxylase activity // inferred from mutant phenotype /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047783 // corticosterone 18-monooxygenase activity // inferred from electronic annotation 1370498_at AF296762 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF296762.1 /DB_XREF=gi:19773585 /FEA=FLmRNA /CNT=2 /TID=Rn.82698.1 /TIER=FL /STK=2 /UG=Rn.82698 /DEF=Rattus norvegicus putative blood group A transferase T2 mRNA, complete cds. /PROD=putative blood group A transferase T2 /FL=gb:AF296762.1 gb:AF469946.1 AF296762 ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) Abo 65270 NM_023094 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0042742 // defense response to bacterium // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0004380 // glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity // inferred from direct assay /// 0004380 // glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0004381 // fucosylgalactoside 3-alpha-galactosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370499_at M62891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M62891.1 /DB_XREF=gi:205722 /FEA=FLmRNA /CNT=2 /TID=Rn.11304.1 /TIER=FL /STK=2 /UG=Rn.11304 /DEF=R.norvegicus 3.2.3 antigen protein mRNA, complete cds. /PROD=3.2.3 antigen protein /FL=gb:M62891.1 M62891 killer cell lectin-like receptor subfamily B, member 1A Klrb1a 362443 NM_001010964 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1370500_a_at D28110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D28110.1 /DB_XREF=gi:644501 /FEA=FLmRNA /CNT=2 /TID=Rn.7619.3 /TIER=FL /STK=2 /UG=Rn.7619 /LL=25037 /UG_GENE=Mobp /DEF=Rattus norvegicus mRNA for MOBP (myelin-associated oligodendrocytic basic protein), complete cds, clone rOPRP1. /PROD=MOBP /FL=gb:D28110.1 D28110 myelin-associated oligodendrocyte basic protein Mobp 25037 NM_012720 0007399 // nervous system development // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0019911 // structural constituent of myelin sheath // inferred from direct assay /// 0019911 // structural constituent of myelin sheath // not recorded /// 0019911 // structural constituent of myelin sheath // inferred from electronic annotation 1370501_at AF099093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF099093.1 /DB_XREF=gi:3818631 /FEA=FLmRNA /CNT=34 /TID=Rn.8202.1 /TIER=FL /STK=1 /UG=Rn.8202 /LL=64631 /UG_GENE=Ubc7 /DEF=Rattus norvegicus ubiquitin-conjugating enzyme UBC7 mRNA, complete cds. /PROD=ubiquitin-conjugating enzyme UBC7 /FL=gb:AF099093.1 AF099093 ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, yeast) Ube2g1 64631 NM_022690 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0016567 // protein ubiquitination // traceable author statement /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070534 // protein K63-linked ubiquitination // not recorded /// 0070534 // protein K63-linked ubiquitination // inferred from sequence or structural similarity /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0070936 // protein K48-linked ubiquitination // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1370502_at AW534339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534339 /DB_XREF=gi:7176753 /DB_XREF=UI-R-C4-alo-c-04-0-UI.s1 /CLONE=UI-R-C4-alo-c-04-0-UI /FEA=FLmRNA /CNT=23 /TID=Rn.1121.2 /TIER=Stack /STK=20 /UG=Rn.1121 /LL=25508 /UG_GENE=Pam /UG_TITLE=Peptidylglycine alpha-amidating monooxygenase /FL=gb:M25719.1 AW534339 peptidylglycine alpha-amidating monooxygenase Pam 25508 NM_013000 0001666 // response to hypoxia // inferred from expression pattern /// 0006518 // peptide metabolic process // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from expression pattern /// 0007507 // heart development // inferred from expression pattern /// 0007595 // lactation // inferred from expression pattern /// 0009268 // response to pH // inferred from direct assay /// 0009987 // cellular process // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from direct assay /// 0046688 // response to copper ion // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060173 // limb development // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005624 // membrane fraction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay /// 0030658 // transport vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043204 // perikaryon // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004504 // peptidylglycine monooxygenase activity // inferred from direct assay /// 0004504 // peptidylglycine monooxygenase activity // inferred from electronic annotation /// 0004598 // peptidylamidoglycolate lyase activity // inferred from direct assay /// 0004598 // peptidylamidoglycolate lyase activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from direct assay /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370503_s_at AB032828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB032828.1 /DB_XREF=gi:6978965 /FEA=FLmRNA /CNT=18 /TID=Rn.8686.1 /TIER=FL /STK=1 /UG=Rn.8686 /DEF=Rattus norvegicus mRNA for type II brain 4.1 minor isoform, complete cds. /PROD=type II brain 4.1 minor isoform /FL=gb:AB032828.1 AB032828 erythrocyte protein band 4.1-like 3 Epb4.1l3 116724 NM_053927 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0005911 // cell-cell junction // inferred from sequence or structural similarity /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0019898 // extrinsic to membrane // inferred from electronic annotation /// 0033270 // paranode region of axon // inferred from electronic annotation /// 0033270 // paranode region of axon // not recorded /// 0044224 // juxtaparanode region of axon // inferred from electronic annotation /// 0044224 // juxtaparanode region of axon // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 1370504_a_at AW252810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252810 /DB_XREF=gi:6596401 /DB_XREF=UI-R-BJ0-ael-a-03-0-UI.s1 /CLONE=UI-R-BJ0-ael-a-03-0-UI /FEA=FLmRNA /CNT=15 /TID=Rn.1476.2 /TIER=Stack /STK=6 /UG=Rn.1476 /LL=24660 /UG_GENE=Pmp22 /UG_TITLE=Peripheral myelin protein /FL=gb:M69139.1 AW252810 peripheral myelin protein 22 Pmp22 24660 NM_017037 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0030154 // cell differentiation // inferred from direct assay /// 0032288 // myelin assembly // inferred from electronic annotation /// 0032288 // myelin assembly // not recorded /// 0042552 // myelination // inferred from direct assay /// 0042552 // myelination // inferred from mutant phenotype 0005923 // tight junction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043218 // compact myelin // inferred from mutant phenotype 1370505_at M86341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M86341.1 /DB_XREF=gi:202758 /FEA=FLmRNA /CNT=15 /TID=Rn.13315.1 /TIER=FL /STK=1 /UG=Rn.13315 /DEF=Rattus norvegicus ADP-ribosylarginine hydrolase mRNA, complete cds. /PROD=ADP-ribosylarginine hydrolase /FL=gb:M86341.1 M86341 ADP-ribosylarginine hydrolase Adprh 25371 NM_183325 0006464 // protein modification process // inferred from mutant phenotype /// 0006464 // protein modification process // not recorded /// 0006464 // protein modification process // inferred from electronic annotation /// 0051725 // protein de-ADP-ribosylation // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003875 // ADP-ribosylarginine hydrolase activity // inferred from direct assay /// 0003875 // ADP-ribosylarginine hydrolase activity // inferred from mutant phenotype /// 0003875 // ADP-ribosylarginine hydrolase activity // not recorded /// 0003875 // ADP-ribosylarginine hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1370506_at U46149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U46149.1 /DB_XREF=gi:1932724 /GEN=COQ7 /FEA=FLmRNA /CNT=16 /TID=Rn.6981.1 /TIER=FL /STK=1 /UG=Rn.6981 /LL=25249 /DEF=Rattus norvegicus COQ7 mRNA, complete cds. /PROD=COQ7 /FL=gb:U46149.1 U46149 coenzyme Q7 homolog, ubiquinone (yeast) Coq7 25249 NM_012785 0001306 // age-dependent response to oxidative stress // inferred from electronic annotation /// 0001306 // age-dependent response to oxidative stress // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001841 // neural tube formation // inferred from electronic annotation /// 0001841 // neural tube formation // not recorded /// 0006744 // ubiquinone biosynthetic process // inferred from genetic interaction /// 0006744 // ubiquinone biosynthetic process // not recorded /// 0006744 // ubiquinone biosynthetic process // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0008340 // determination of adult lifespan // inferred from electronic annotation /// 0008340 // determination of adult lifespan // not recorded /// 0019538 // protein metabolic process // inferred from electronic annotation /// 0022008 // neurogenesis // inferred from electronic annotation /// 0022008 // neurogenesis // not recorded /// 0022904 // respiratory electron transport chain // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // not recorded /// 0034599 // cellular response to oxidative stress // inferred from electronic annotation /// 0034599 // cellular response to oxidative stress // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042775 // mitochondrial ATP synthesis coupled electron transport // inferred from electronic annotation /// 0042775 // mitochondrial ATP synthesis coupled electron transport // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0070584 // mitochondrion morphogenesis // inferred from electronic annotation /// 0070584 // mitochondrion morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046914 // transition metal ion binding // inferred from electronic annotation 1370507_at U67140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U67140.1 /DB_XREF=gi:1864092 /FEA=FLmRNA /CNT=14 /TID=Rn.11279.1 /TIER=FL /STK=1 /UG=Rn.11279 /DEF=Rattus norvegicus PSD-95SAP90-associated protein-4 mRNA, complete cds. /PROD=PSD-95SAP90-associated protein-4 /FL=gb:U67140.1 U67140 discs, large homolog-associated protein 4 (Drosophila) Dlgap4 286930 NM_173145 0007267 // cell-cell signaling // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from direct assay 1370508_a_at AF290212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF290212.2 /DB_XREF=gi:11422003 /FEA=FLmRNA /CNT=2 /TID=Rn.23698.3 /TIER=FL /STK=1 /UG=Rn.23698 /LL=29717 /UG_GENE=Cacna1g /DEF=Rattus norvegicus calcium channel alpha-1-G subunit mRNA, complete cds. /PROD=calcium channel alpha-1-G subunit /FL=gb:AF027984.1 gb:AF290212.2 AF290212 calcium channel, voltage-dependent, T type, alpha 1G subunit Cacna1g 29717 NM_031601 0002027 // regulation of heart rate // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0010045 // response to nickel ion // not recorded /// 0014824 // artery smooth muscle contraction // inferred from mutant phenotype /// 0045956 // positive regulation of calcium ion-dependent exocytosis // inferred from mutant phenotype /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0051929 // positive regulation of calcium ion transport via voltage-gated calcium channel activity // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060371 // regulation of atrial cardiomyocyte membrane depolarization // not recorded /// 0070588 // calcium ion transmembrane transport // not recorded /// 0071549 // cellular response to dexamethasone stimulus // inferred from expression pattern 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005891 // voltage-gated calcium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // not recorded /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0008332 // low voltage-gated calcium channel activity // inferred from direct assay /// 0008332 // low voltage-gated calcium channel activity // not recorded 1370509_at AF062741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF062741.1 /DB_XREF=gi:3298608 /FEA=FLmRNA /CNT=11 /TID=Rn.30021.1 /TIER=FL /STK=1 /UG=Rn.30021 /DEF=Rattus norvegicus pyruvate dehydrogenase phosphatase isoenzyme 2 mRNA, complete cds. /PROD=pyruvate dehydrogenase phosphatase isoenzyme 2 /FL=gb:AF062741.1 AF062741 pyruvate dehyrogenase phosphatase catalytic subunit 2 Pdp2 246311 NM_145091 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0009758 // carbohydrate utilization // traceable author statement /// 0010510 // regulation of acetyl-CoA biosynthetic process from pyruvate // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from expression pattern /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation /// 0019910 // mitochondrial pyruvate dehydrogenase (lipoamide) phosphatase complex // traceable author statement 0000287 // magnesium ion binding // inferred by curator /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0004724 // magnesium-dependent protein serine/threonine phosphatase activity // inferred from direct assay /// 0004741 // [pyruvate dehydrogenase (lipoamide)] phosphatase activity // inferred from direct assay /// 0004741 // [pyruvate dehydrogenase (lipoamide)] phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370510_a_at AB012600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB012600.1 /DB_XREF=gi:3668182 /GEN=BMAL1b /FEA=FLmRNA /CNT=10 /TID=Rn.14532.1 /TIER=FL /STK=1 /UG=Rn.14532 /LL=29657 /DEF=Rattus norvegicus mRNA for BMAL1b, complete cds. /PROD=BMAL1b /FL=gb:AB012600.1 AB012600 aryl hydrocarbon receptor nuclear translocator-like Arntl 29657 NM_024362 0000060 // protein import into nucleus, translocation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from expression pattern /// 0007623 // circadian rhythm // not recorded /// 0042176 // regulation of protein catabolic process // not recorded /// 0042752 // regulation of circadian rhythm // non-traceable author statement /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048511 // rhythmic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017162 // aryl hydrocarbon receptor binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0051879 // Hsp90 protein binding // not recorded 1370511_at U05675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U05675.1 /DB_XREF=gi:455104 /FEA=FLmRNA /CNT=10 /TID=Rn.11416.1 /TIER=FL /STK=1 /UG=Rn.11416 /DEF=Rattus norvegicus Sprague-Dawley fibrinogen B beta chain mRNA, complete cds. /PROD=fibrinogen B beta chain /FL=gb:U05675.1 U05675 fibrinogen beta chain Fgb 24366 NM_020071 0007165 // signal transduction // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation /// 0030168 // platelet activation // inferred from electronic annotation /// 0042060 // wound healing // traceable author statement /// 0051258 // protein polymerization // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005577 // fibrinogen complex // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005938 // cell cortex // not recorded /// 0009897 // external side of plasma membrane // not recorded /// 0031091 // platelet alpha granule // not recorded /// 0031093 // platelet alpha granule lumen // not recorded 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030674 // protein binding, bridging // inferred from electronic annotation /// 0043499 // eukaryotic cell surface binding // not recorded /// 0051087 // chaperone binding // not recorded 1370512_at AF275151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF275151.1 /DB_XREF=gi:9295519 /FEA=FLmRNA /CNT=11 /TID=Rn.17120.1 /TIER=FL /STK=1 /UG=Rn.17120 /DEF=Rattus norvegicus androgen receptor-related apoptosis-associated protein CBL27 mRNA, complete cds. /PROD=androgen receptor-related apoptosis-associatedprotein CBL27 /FL=gb:AF275151.1 AF275151 trinucleotide repeat containing 6B Tnrc6b 192178 NM_138845 0000166 // nucleotide binding // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation 1370513_at M34135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M34135.1 /DB_XREF=gi:207354 /FEA=FLmRNA /CNT=11 /TID=Rn.1033.4 /TIER=FL /STK=1 /UG=Rn.1033 /LL=24851 /UG_GENE=Tpm1 /UG_TITLE=Tropomyosin 1 (alpha) /DEF=Rat brain alpha-tropomyosin (TMBr-1) mRNA, complete cds. /FL=gb:M34135.1 M34135 tropomyosin 1, alpha Tpm1 24851 NM_001034068 /// NM_001034069 /// NM_001034070 /// NM_001034071 /// NM_001034072 /// NM_001034073 /// NM_001034074 /// NM_001034075 /// NM_019131 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006936 // muscle contraction // traceable author statement /// 0009790 // embryo development // inferred from electronic annotation /// 0030049 // muscle filament sliding // inferred from direct assay /// 0030336 // negative regulation of cell migration // inferred from genetic interaction /// 0031529 // ruffle organization // inferred from genetic interaction /// 0032781 // positive regulation of ATPase activity // inferred from mutant phenotype /// 0032781 // positive regulation of ATPase activity // inferred from direct assay /// 0042060 // wound healing // inferred from genetic interaction /// 0045785 // positive regulation of cell adhesion // inferred from genetic interaction /// 0051496 // positive regulation of stress fiber assembly // inferred from genetic interaction /// 0051693 // actin filament capping // inferred from direct assay /// 0060048 // cardiac muscle contraction // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030016 // myofibril // inferred from electronic annotation /// 0030018 // Z disc // inferred from mutant phenotype /// 0031941 // filamentous actin // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003779 // actin binding // inferred from mutant phenotype /// 0003779 // actin binding // traceable author statement /// 0003779 // actin binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from direct assay /// 0051015 // actin filament binding // inferred from mutant phenotype 1370514_a_at AI713274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI713274 /DB_XREF=gi:5017074 /DB_XREF=UI-R-AB1-ys-a-05-0-UI.s2 /CLONE=UI-R-AB1-ys-a-05-0-UI /FEA=FLmRNA /CNT=11 /TID=Rn.41132.2 /TIER=Stack /STK=7 /UG=Rn.41132 /LL=59267 /UG_GENE=Syt7 /UG_TITLE=synaptotagmin 7 /FL=gb:AF336852.1 AI713274 synaptotagmin VII Syt7 59267 NM_021659 0001778 // plasma membrane repair // inferred from electronic annotation /// 0001778 // plasma membrane repair // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0017158 // regulation of calcium ion-dependent exocytosis // inferred from mutant phenotype /// 0050796 // regulation of insulin secretion // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from mutant phenotype 1370515_x_at AI713274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI713274 /DB_XREF=gi:5017074 /DB_XREF=UI-R-AB1-ys-a-05-0-UI.s2 /CLONE=UI-R-AB1-ys-a-05-0-UI /FEA=FLmRNA /CNT=11 /TID=Rn.41132.2 /TIER=Stack /STK=7 /UG=Rn.41132 /LL=59267 /UG_GENE=Syt7 /UG_TITLE=synaptotagmin 7 /FL=gb:AF336852.1 AI713274 synaptotagmin VII Syt7 59267 NM_021659 0001778 // plasma membrane repair // inferred from electronic annotation /// 0001778 // plasma membrane repair // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0017158 // regulation of calcium ion-dependent exocytosis // inferred from mutant phenotype /// 0050796 // regulation of insulin secretion // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from mutant phenotype 1370516_at AB026665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB026665.1 /DB_XREF=gi:13810436 /GEN=rPHT2 /FEA=FLmRNA /CNT=10 /TID=Rn.17317.1 /TIER=FL /STK=1 /UG=Rn.17317 /DEF=Rattus norvegicus mRNA for peptide histidine transporter 1 homolog rPHT2, complete cds. /PROD=peptide histidine transporter 1 homolog rPHT2 /FL=gb:AB026665.1 AB026665 solute carrier family 15, member 3 Slc15a3 246239 NM_139341 0006810 // transport // inferred from electronic annotation /// 0006857 // oligopeptide transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0015833 // peptide transport // inferred from electronic annotation /// 0030163 // protein catabolic process // non-traceable author statement 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005765 // lysosomal membrane // not recorded /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005427 // proton-dependent oligopeptide secondary active transmembrane transporter activity // traceable author statement /// 0015293 // symporter activity // inferred from electronic annotation /// 0015333 // peptide:hydrogen symporter activity // not recorded 1370517_at U18772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U18772.1 /DB_XREF=gi:687653 /FEA=FLmRNA /CNT=14 /TID=Rn.54707.1 /TIER=FL /STK=1 /UG=Rn.54707 /DEF=Rattus norvegicus neuronal pentraxin precursor mRNA, complete cds. /PROD=neuronal pentraxin precursor /FL=gb:U18772.1 U18772 neuronal pentraxin 1 Nptx1 266777 NM_153735 0030133 // transport vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0046872 // metal ion binding // inferred from electronic annotation 1370518_a_at U06069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U06069.1 /DB_XREF=gi:458341 /FEA=FLmRNA /CNT=11 /TID=Rn.80843.1 /TIER=FL /STK=1 /UG=Rn.80843 /LL=25558 /UG_GENE=Stxbp1 /DEF=Rattus norvegicus Sec1 homolog mRNA, complete cds. /PROD=Sec1 homolog /FL=gb:L26264.1 gb:U06069.1 U06069 syntaxin binding protein 1 Stxbp1 25558 NM_013038 0002576 // platelet degranulation // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // not recorded /// 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation /// 0006904 // vesicle docking involved in exocytosis // not recorded /// 0007269 // neurotransmitter secretion // not recorded /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0007412 // axon target recognition // not recorded /// 0010807 // regulation of synaptic vesicle priming // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016188 // synaptic vesicle maturation // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0032229 // negative regulation of synaptic transmission, GABAergic // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0050821 // protein stabilization // inferred from direct assay /// 0060292 // long term synaptic depression // not recorded /// 0070527 // platelet aggregation // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031091 // platelet alpha granule // not recorded /// 0043234 // protein complex // inferred from direct assay 0000149 // SNARE binding // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0017075 // syntaxin-1 binding // inferred from direct assay /// 0017075 // syntaxin-1 binding // not recorded /// 0019904 // protein domain specific binding // inferred from direct assay /// 0019905 // syntaxin binding // inferred from direct assay /// 0030347 // syntaxin-2 binding // not recorded /// 0042802 // identical protein binding // inferred from physical interaction /// 0047485 // protein N-terminus binding // inferred from direct assay 1370519_at U06069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U06069.1 /DB_XREF=gi:458341 /FEA=FLmRNA /CNT=11 /TID=Rn.80843.1 /TIER=FL /STK=1 /UG=Rn.80843 /LL=25558 /UG_GENE=Stxbp1 /DEF=Rattus norvegicus Sec1 homolog mRNA, complete cds. /PROD=Sec1 homolog /FL=gb:L26264.1 gb:U06069.1 U06069 syntaxin binding protein 1 Stxbp1 25558 NM_013038 0002576 // platelet degranulation // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // not recorded /// 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation /// 0006904 // vesicle docking involved in exocytosis // not recorded /// 0007269 // neurotransmitter secretion // not recorded /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0007412 // axon target recognition // not recorded /// 0010807 // regulation of synaptic vesicle priming // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016188 // synaptic vesicle maturation // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0032229 // negative regulation of synaptic transmission, GABAergic // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0050821 // protein stabilization // inferred from direct assay /// 0060292 // long term synaptic depression // not recorded /// 0070527 // platelet aggregation // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031091 // platelet alpha granule // not recorded /// 0043234 // protein complex // inferred from direct assay 0000149 // SNARE binding // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0017075 // syntaxin-1 binding // inferred from direct assay /// 0017075 // syntaxin-1 binding // not recorded /// 0019904 // protein domain specific binding // inferred from direct assay /// 0019905 // syntaxin binding // inferred from direct assay /// 0030347 // syntaxin-2 binding // not recorded /// 0042802 // identical protein binding // inferred from physical interaction /// 0047485 // protein N-terminus binding // inferred from direct assay 1370520_at AF260582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF260582.1 /DB_XREF=gi:13925619 /FEA=FLmRNA /CNT=9 /TID=Rn.48921.1 /TIER=FL /STK=1 /UG=Rn.48921 /DEF=Rattus norvegicus hippyragranin mRNA, complete cds. /PROD=hippyragranin /FL=gb:AF260582.1 AF260582 hippyragranin LOC257650 257650 NM_147142 1370521_at U35245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U35245.1 /DB_XREF=gi:1477469 /FEA=FLmRNA /CNT=8 /TID=Rn.10661.1 /TIER=FL /STK=1 /UG=Rn.10661 /LL=64060 /UG_GENE=Vps33b /DEF=Rat vacuolar protein sorting homolog r-vps33b mRNA, complete cds. /PROD=vacuolar protein sorting homolog r-vps33b /FL=gb:U35245.1 U35245 vacuolar protein sorting 33 homolog B (yeast) Vps33b 64060 NM_022286 0006810 // transport // inferred from electronic annotation /// 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation /// 0006944 // cellular membrane fusion // inferred from electronic annotation /// 0006944 // cellular membrane fusion // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0015031 // protein transport // not recorded /// 0016192 // vesicle-mediated transport // not recorded /// 0016192 // vesicle-mediated transport // non-traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0032400 // melanosome localization // inferred from electronic annotation /// 0032400 // melanosome localization // not recorded /// 0032418 // lysosome localization // inferred from electronic annotation /// 0032418 // lysosome localization // not recorded /// 0070889 // platelet alpha granule organization // inferred from electronic annotation /// 0070889 // platelet alpha granule organization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005770 // late endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030897 // HOPS complex // inferred from electronic annotation /// 0030897 // HOPS complex // not recorded /// 0031091 // platelet alpha granule // inferred from electronic annotation /// 0031091 // platelet alpha granule // not recorded /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030347 // syntaxin-2 binding // inferred from direct assay /// 0030348 // syntaxin-3 binding // inferred from direct assay 1370522_at L04796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L04796.1 /DB_XREF=gi:457613 /FEA=FLmRNA /CNT=8 /TID=Rn.11225.1 /TIER=FL /STK=1 /UG=Rn.11225 /LL=24953 /UG_GENE=Gcgr /DEF=Rattus norvegicus glucagon receptor mRNA, complete cds. /PROD=glucagon receptor /FL=gb:M96674.1 gb:L04796.1 L04796 glucagon receptor Gcgr 24953 NM_172091 /// NM_172092 0006887 // exocytosis // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from mutant phenotype /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from direct assay /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // traceable author statement /// 0009755 // hormone-mediated signaling pathway // inferred from direct assay /// 0009755 // hormone-mediated signaling pathway // inferred from mutant phenotype /// 0009755 // hormone-mediated signaling pathway // not recorded 0005768 // endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004967 // glucagon receptor activity // inferred from direct assay /// 0004967 // glucagon receptor activity // inferred from mutant phenotype /// 0004967 // glucagon receptor activity // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred from direct assay /// 0017046 // peptide hormone binding // inferred from mutant phenotype 1370523_a_at AW142720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142720 /DB_XREF=gi:6162619 /DB_XREF=EST292972 /CLONE=RGIAT32 /FEA=EST /CNT=23 /TID=Rn.7390.2 /TIER=Stack /STK=18 /UG=Rn.7390 /UG_TITLE=Rattus norvegicus clone ubc2e ubiquitin conjugating enzyme (E217kB) mRNA, complete cds AW142720 ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast) Ube2d2 641452 NM_001037292 0016567 // protein ubiquitination // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0070936 // protein K48-linked ubiquitination // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1370524_at AW142720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142720 /DB_XREF=gi:6162619 /DB_XREF=EST292972 /CLONE=RGIAT32 /FEA=EST /CNT=23 /TID=Rn.7390.2 /TIER=Stack /STK=18 /UG=Rn.7390 /UG_TITLE=Rattus norvegicus clone ubc2e ubiquitin conjugating enzyme (E217kB) mRNA, complete cds AW142720 ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast) Ube2d2 641452 NM_001037292 0016567 // protein ubiquitination // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0070936 // protein K48-linked ubiquitination // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1370525_at U13176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U13176.1 /DB_XREF=gi:595667 /GEN=E217kB /FEA=FLmRNA /CNT=8 /TID=Rn.7390.1 /TIER=FL /STK=1 /UG=Rn.7390 /DEF=Rattus norvegicus clone ubc2e ubiquitin conjugating enzyme (E217kB) mRNA, complete cds. /PROD=ubiquitin conjugating enzyme /FL=gb:U13176.1 U13176 ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast) Ube2d2 641452 NM_001037292 0016567 // protein ubiquitination // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0070936 // protein K48-linked ubiquitination // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1370526_at AF020045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF020045.1 /DB_XREF=gi:3236341 /FEA=FLmRNA /CNT=7 /TID=Rn.29975.1 /TIER=FL /STK=1 /UG=Rn.29975 /LL=83577 /UG_GENE=Itgae /DEF=Rattus norvegicus integrin alpha E1 mRNA, complete cds. /PROD=integrin alpha E1 /FL=gb:AF020045.1 AF020045 integrin, alpha E Itgae 83577 NM_031768 0007155 // cell adhesion // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation 0008305 // integrin complex // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1370527_a_at L07578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L07578.1 /DB_XREF=gi:294524 /FEA=FLmRNA /CNT=7 /TID=Rn.8046.1 /TIER=FL /STK=1 /UG=Rn.8046 /LL=64462 /UG_GENE=Csnk1d /DEF=Rat casein kinase I delta mRNA, complete cds. /PROD=casein kinase I delta /FL=gb:L07578.1 L07578 casein kinase 1, delta Csnk1d 64462 NM_139060 0000278 // mitotic cell cycle // traceable author statement /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0032922 // circadian regulation of gene expression // not recorded /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0042752 // regulation of circadian rhythm // not recorded /// 0042752 // regulation of circadian rhythm // inferred from sequence or structural similarity /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // traceable author statement /// 0005819 // spindle // traceable author statement /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // inferred from direct assay /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0051219 // phosphoprotein binding // inferred from direct assay 1370528_at L07578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L07578.1 /DB_XREF=gi:294524 /FEA=FLmRNA /CNT=7 /TID=Rn.8046.1 /TIER=FL /STK=1 /UG=Rn.8046 /LL=64462 /UG_GENE=Csnk1d /DEF=Rat casein kinase I delta mRNA, complete cds. /PROD=casein kinase I delta /FL=gb:L07578.1 L07578 casein kinase 1, delta Csnk1d 64462 NM_139060 0000278 // mitotic cell cycle // traceable author statement /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0032922 // circadian regulation of gene expression // not recorded /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0042752 // regulation of circadian rhythm // not recorded /// 0042752 // regulation of circadian rhythm // inferred from sequence or structural similarity /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // traceable author statement /// 0005819 // spindle // traceable author statement /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // inferred from direct assay /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0051219 // phosphoprotein binding // inferred from direct assay 1370529_a_at AB003171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB003171.1 /DB_XREF=gi:2723383 /FEA=FLmRNA /CNT=10 /TID=Rn.11130.1 /TIER=FL /STK=1 /UG=Rn.11130 /LL=25096 /UG_GENE=Pld1 /DEF=Rattus norvegicus mRNA for phospholipase D1b, complete cds. /PROD=phospholipase D1b /FL=gb:AB003171.1 gb:U69550.1 gb:AB000779.1 AB003171 phospholipase D1 Pld1 25096 NM_030992 0006654 // phosphatidic acid biosynthetic process // inferred from mutant phenotype /// 0007154 // cell communication // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from mutant phenotype /// 0009395 // phospholipid catabolic process // inferred from mutant phenotype /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0043434 // response to peptide hormone stimulus // inferred from mutant phenotype /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from direct assay /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0031985 // Golgi cisterna // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004630 // phospholipase D activity // inferred from direct assay /// 0004630 // phospholipase D activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation /// 0070290 // NAPE-specific phospholipase D activity // inferred from electronic annotation 1370530_a_at AB000779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB000779.1 /DB_XREF=gi:2828351 /FEA=FLmRNA /CNT=10 /TID=Rn.11130.1 /TIER=FL /STK=1 /UG=Rn.11130 /LL=25096 /UG_GENE=Pld1 /DEF=Rattus norvegicus mRNA for phospholipase D, complete cds. /PROD=phospholipase D /FL=gb:AB003171.1 gb:U69550.1 gb:AB000779.1 AB000779 phospholipase D1 Pld1 25096 NM_030992 0006654 // phosphatidic acid biosynthetic process // inferred from mutant phenotype /// 0007154 // cell communication // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from mutant phenotype /// 0009395 // phospholipid catabolic process // inferred from mutant phenotype /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0043434 // response to peptide hormone stimulus // inferred from mutant phenotype /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from direct assay /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0031985 // Golgi cisterna // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004630 // phospholipase D activity // inferred from direct assay /// 0004630 // phospholipase D activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation /// 0070290 // NAPE-specific phospholipase D activity // inferred from electronic annotation 1370531_a_at U69550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U69550.1 /DB_XREF=gi:2627322 /GEN=rPLD1 /FEA=FLmRNA /CNT=10 /TID=Rn.11130.1 /TIER=FL /STK=1 /UG=Rn.11130 /LL=25096 /DEF=Rattus norvegicus phospholipase D (rPLD1) mRNA, complete cds. /PROD=phospholipase D /FL=gb:AB003171.1 gb:U69550.1 gb:AB000779.1 U69550 phospholipase D1 Pld1 25096 NM_030992 0006654 // phosphatidic acid biosynthetic process // inferred from mutant phenotype /// 0007154 // cell communication // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from mutant phenotype /// 0009395 // phospholipid catabolic process // inferred from mutant phenotype /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0043434 // response to peptide hormone stimulus // inferred from mutant phenotype /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from direct assay /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0031985 // Golgi cisterna // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004630 // phospholipase D activity // inferred from direct assay /// 0004630 // phospholipase D activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation /// 0070290 // NAPE-specific phospholipase D activity // inferred from electronic annotation 1370532_at U69550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U69550.1 /DB_XREF=gi:2627322 /GEN=rPLD1 /FEA=FLmRNA /CNT=10 /TID=Rn.11130.1 /TIER=FL /STK=1 /UG=Rn.11130 /LL=25096 /DEF=Rattus norvegicus phospholipase D (rPLD1) mRNA, complete cds. /PROD=phospholipase D /FL=gb:AB003171.1 gb:U69550.1 gb:AB000779.1 U69550 phospholipase D1 Pld1 25096 NM_030992 0006654 // phosphatidic acid biosynthetic process // inferred from mutant phenotype /// 0007154 // cell communication // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from mutant phenotype /// 0009395 // phospholipid catabolic process // inferred from mutant phenotype /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0043434 // response to peptide hormone stimulus // inferred from mutant phenotype /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from direct assay /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0031985 // Golgi cisterna // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004630 // phospholipase D activity // inferred from direct assay /// 0004630 // phospholipase D activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation /// 0070290 // NAPE-specific phospholipase D activity // inferred from electronic annotation 1370533_at U67139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U67139.1 /DB_XREF=gi:1864090 /FEA=FLmRNA /CNT=8 /TID=Rn.22954.1 /TIER=FL /STK=1 /UG=Rn.22954 /DEF=Rattus norvegicus PSD-95SAP90-associated protein-3 mRNA, complete CDS. /PROD=PSD-95SAP90-associated protein-3 /FL=gb:U67139.1 U67139 discs, large (Drosophila) homolog-associated protein 3 Dlgap3 286923 NM_173138 0007267 // cell-cell signaling // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0001540 // beta-amyloid binding // inferred from electronic annotation /// 0001540 // beta-amyloid binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from direct assay 1370534_at U35025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U35025.1 /DB_XREF=gi:1556456 /GEN=ALK7 /FEA=FLmRNA /CNT=8 /TID=Rn.10580.1 /TIER=FL /STK=1 /UG=Rn.10580 /DEF=Rattus norvegicus activin receptor-like kinase 7 (ALK7) mRNA, complete cds. /PROD=activin receptor-like kinase 7 /FL=gb:U69702.1 gb:U35025.1 U35025 activin A receptor, type IC Acvr1c 245921 NM_139090 0001541 // ovarian follicle development // inferred from expression pattern /// 0001701 // in utero embryonic development // not recorded /// 0002021 // response to dietary excess // not recorded /// 0006468 // protein phosphorylation // inferred by curator /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0007181 // transforming growth factor beta receptor complex assembly // inferred from direct assay /// 0007368 // determination of left/right symmetry // not recorded /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0009749 // response to glucose stimulus // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019915 // lipid storage // not recorded /// 0021549 // cerebellum development // inferred from expression pattern /// 0021766 // hippocampus development // inferred from expression pattern /// 0030154 // cell differentiation // inferred from direct assay /// 0030154 // cell differentiation // not recorded /// 0030901 // midbrain development // inferred from expression pattern /// 0032868 // response to insulin stimulus // not recorded /// 0033993 // response to lipid // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042981 // regulation of apoptosis // inferred from direct assay /// 0042981 // regulation of apoptosis // not recorded /// 0046676 // negative regulation of insulin secretion // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048179 // activin receptor complex // inferred from direct assay /// 0048179 // activin receptor complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta receptor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016361 // activin receptor activity, type I // inferred from direct assay /// 0016361 // activin receptor activity, type I // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0046332 // SMAD binding // inferred from direct assay /// 0046872 // metal ion binding // inferred by curator /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048185 // activin binding // inferred from direct assay /// 0070700 // BMP receptor binding // inferred from direct assay 1370535_at U48809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U48809.1 /DB_XREF=gi:1511631 /GEN=NZF-1 /FEA=FLmRNA /CNT=7 /TID=Rn.10559.1 /TIER=FL /STK=1 /UG=Rn.10559 /LL=116668 /DEF=Rattus norvegicus neural zinc finger factor-1 (NZF-1) mRNA, complete cds. /PROD=neural zinc finger factor-1 /FL=gb:U48809.1 gb:U67081.1 U48809 myelin transcription factor 1-like Myt1l 116668 NM_053888 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1370536_at AF059530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF059530.1 /DB_XREF=gi:3088572 /GEN=PRMT3 /FEA=FLmRNA /CNT=7 /TID=Rn.33389.1 /TIER=FL /STK=1 /UG=Rn.33389 /LL=89820 /DEF=Rattus norvegicus protein arginine N-methyltransferase 3 (PRMT3) mRNA, complete cds. /PROD=protein arginine N-methyltransferase 3 /FL=gb:AF059530.1 AF059530 protein arginine methyltransferase 3 Prmt3 89820 NM_053557 0006479 // protein methylation // not recorded /// 0006479 // protein methylation // inferred from electronic annotation /// 0019919 // peptidyl-arginine methylation, to asymmetrical-dimethyl arginine // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0005840 // ribosome // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008276 // protein methyltransferase activity // inferred from electronic annotation /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // traceable author statement /// 0016274 // protein-arginine N-methyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0035242 // protein-arginine omega-N asymmetric methyltransferase activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1370537_at AB066102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB066102.1 /DB_XREF=gi:18181881 /GEN=G22p1 /FEA=FLmRNA /CNT=7 /TID=Rn.27023.1 /TIER=FL /STK=1 /UG=Rn.27023 /DEF=Rattus norvegicus mRNA for G22p1, complete cds. /PROD=G22p1 /FL=gb:AB066102.1 AB066102 X-ray repair complementing defective repair in Chinese hamster cells 6 Xrcc6 25019 NM_139080 0006302 // double-strand break repair // not recorded /// 0006302 // double-strand break repair // traceable author statement /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006303 // double-strand break repair via nonhomologous end joining // inferred from electronic annotation /// 0006303 // double-strand break repair via nonhomologous end joining // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0010212 // response to ionizing radiation // inferred from electronic annotation /// 0010212 // response to ionizing radiation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0019047 // provirus integration // not recorded /// 0019059 // initiation of viral infection // not recorded /// 0033151 // V(D)J recombination // inferred from electronic annotation /// 0033151 // V(D)J recombination // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0050769 // positive regulation of neurogenesis // inferred from electronic annotation /// 0050769 // positive regulation of neurogenesis // not recorded /// 0071475 // cellular hyperosmotic salinity response // inferred from direct assay /// 0071481 // cellular response to X-ray // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005958 // DNA-dependent protein kinase-DNA ligase 4 complex // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0043564 // Ku70:Ku80 complex // inferred from electronic annotation /// 0043564 // Ku70:Ku80 complex // not recorded /// 0070419 // nonhomologous end joining complex // not recorded /// 0070419 // nonhomologous end joining complex // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003691 // double-stranded telomeric DNA binding // inferred from electronic annotation /// 0003691 // double-stranded telomeric DNA binding // not recorded /// 0004003 // ATP-dependent DNA helicase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0051575 // 5'-deoxyribose-5-phosphate lyase activity // inferred from electronic annotation /// 0051575 // 5'-deoxyribose-5-phosphate lyase activity // not recorded 1370538_at U61261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U61261.1 /DB_XREF=gi:1620509 /FEA=FLmRNA /CNT=6 /TID=Rn.10597.1 /TIER=FL /STK=1 /UG=Rn.10597 /DEF=Rattus norvegicus laminin-5 alpha 3 chain mRNA, complete cds. /PROD=laminin-5 alpha 3 chain /FL=gb:U61261.1 U61261 laminin, alpha 3 Lama3 307582 NM_173306 0007155 // cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // inferred from mutant phenotype /// 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0031581 // hemidesmosome assembly // inferred from mutant phenotype /// 0031581 // hemidesmosome assembly // not recorded /// 0045995 // regulation of embryonic development // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005606 // laminin-1 complex // inferred from electronic annotation /// 0005608 // laminin-3 complex // inferred from direct assay /// 0005610 // laminin-5 complex // not recorded /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0030056 // hemidesmosome // inferred from direct assay 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1370539_at U53475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U53475.1 /DB_XREF=gi:1314636 /GEN=Rab8b /FEA=FLmRNA /CNT=6 /TID=Rn.10995.1 /TIER=FL /STK=1 /UG=Rn.10995 /DEF=Rattus norvegicus GTPase Rab8b (Rab8b) mRNA, complete cds. /PROD=GTPase Rab8b /FL=gb:U53475.1 U53475 RAB8B, member RAS oncogene family Rab8b 266688 NM_153317 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0031346 // positive regulation of cell projection organization // inferred from direct assay /// 0051461 // positive regulation of adrenocorticotropin secretion // inferred from direct assay 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0051286 // cell tip // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0030911 // TPR domain binding // inferred from physical interaction 1370540_at U15660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U15660.1 /DB_XREF=gi:758417 /GEN=HZF-2 /FEA=FLmRNA /CNT=9 /TID=Rn.10055.1 /TIER=FL /STK=1 /UG=Rn.10055 /DEF=Rattus norvegicus orphan nuclear receptor HZF-2 (HZF-2) mRNA, complete cds. /PROD=orphan nuclear receptor HZF-2 /FL=gb:U15660.1 U15660 nuclear receptor subfamily 1, group D, member 2 Nr1d2 259241 NM_147210 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0004887 // thyroid hormone receptor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370541_at U20796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U20796.1 /DB_XREF=gi:687734 /FEA=FLmRNA /CNT=9 /TID=Rn.10055.1 /TIER=ConsEnd /STK=1 /UG=Rn.10055 /DEF=Rattus norvegicus nuclear receptor Rev-ErbA-beta mRNA, partial cds. /PROD=Rev-ErbA-beta /FL=gb:U15660.1 U20796 nuclear receptor subfamily 1, group D, member 2 Nr1d2 259241 NM_147210 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0004887 // thyroid hormone receptor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370542_a_at AB030216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB030216.1 /DB_XREF=gi:11995008 /GEN=elf-1 /FEA=FLmRNA /CNT=1 /TID=Rn.7728.2 /TIER=FL /STK=1 /UG=Rn.7728 /LL=85424 /DEF=Rattus norvegicus mRNA for transcription factor Elf-1, complete cds. /PROD=transcription factor Elf-1 /FL=gb:AB030216.1 AB030216 E74-like factor 1 Elf1 85424 NM_053520 0001817 // regulation of cytokine production // inferred from electronic annotation /// 0001817 // regulation of cytokine production // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0050860 // negative regulation of T cell receptor signaling pathway // inferred from electronic annotation /// 0050860 // negative regulation of T cell receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // inferred from mutant phenotype /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1370543_at U76557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U76557.1 /DB_XREF=gi:1931578 /GEN=OGT /FEA=FLmRNA /CNT=7 /TID=Rn.82705.1 /TIER=FL /STK=1 /UG=Rn.82705 /LL=26295 /DEF=Rattus norvegicus O-GlcNAc transferase, p110 subunit (OGT) mRNA, complete cds. /PROD=O-GlcNAc transferase, p110 subunit /FL=gb:U76557.1 U76557 O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) Ogt 26295 NM_017107 0006493 // protein O-linked glycosylation // inferred from direct assay /// 0070207 // protein homotrimerization // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0070688 // MLL5-L complex // inferred from electronic annotation /// 0070688 // MLL5-L complex // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008375 // acetylglucosaminyltransferase activity // not recorded /// 0008375 // acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0016262 // protein N-acetylglucosaminyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0048029 // monosaccharide binding // inferred from direct assay 1370544_at AF335571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF335571.1 /DB_XREF=gi:17016931 /FEA=FLmRNA /CNT=7 /TID=Rn.76362.1 /TIER=FL /STK=1 /UG=Rn.76362 /DEF=Rattus norvegicus microtubule-associated protein EMAP mRNA, complete cds. /PROD=microtubule-associated protein EMAP /FL=gb:AF335571.1 AF335571 echinoderm microtubule associated protein like 2 Eml2 192360 NM_138921 0005737 // cytoplasm // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from direct assay 1370545_at M26161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M26161.1 /DB_XREF=gi:206490 /GEN=potassium channel /FEA=FLmRNA /CNT=7 /TID=Rn.9769.1 /TIER=FL /STK=1 /UG=Rn.9769 /DEF=Rattus norvegicus potassium channel protein mRNA, complete cds. /PROD=potassium channel protein /FL=gb:M26161.1 M26161 potassium voltage-gated channel, shaker-related subfamily, member 1 Kcna1 24520 NM_173095 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from mutant phenotype /// 0044224 // juxtaparanode region of axon // inferred from electronic annotation /// 0044224 // juxtaparanode region of axon // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005251 // delayed rectifier potassium channel activity // inferred from mutant phenotype /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation 1370546_at U75361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U75361.1 /DB_XREF=gi:1763305 /FEA=FLmRNA /CNT=6 /TID=Rn.11278.1 /TIER=FL /STK=1 /UG=Rn.11278 /DEF=Rattus norvegicus Munc13-3 mRNA, complete cds. /PROD=Munc13-3 /FL=gb:U75361.1 U75361 unc-13 homolog C (C. elegans) Unc13c 286931 NM_173146 0006887 // exocytosis // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0046928 // regulation of neurotransmitter secretion // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0046872 // metal ion binding // inferred from electronic annotation 1370547_at M84000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M84000.1 /DB_XREF=gi:205383 /GEN=alpha-1-macrogloculin /FEA=FLmRNA /CNT=6 /TID=Rn.11295.1 /TIER=FL /STK=1 /UG=Rn.11295 /DEF=Rat alpha-1-macrogloculin mRNA, complete cds. /PROD=alpha-1-macroglobulin /FL=gb:M77183.1 gb:M84000.1 M84000 pregnancy-zone protein Pzp 252922 NM_145779 0010951 // negative regulation of endopeptidase activity // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0004866 // endopeptidase inhibitor activity // not recorded /// 0004866 // endopeptidase inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1370548_at AB047324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB047324.1 /DB_XREF=gi:14090277 /GEN=TAT1 /FEA=FLmRNA /CNT=6 /TID=Rn.21992.1 /TIER=FL /STK=1 /UG=Rn.21992 /LL=170566 /UG_TITLE=T-type amino acid transporter 1 /DEF=Rattus norvegicus TAT1 mRNA, complete cds. /FL=gb:AB047324.1 AB047324 solute carrier family 16 (monocarboxylic acid transporters), member 10 Slc16a10 170566 NM_138831 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation 1370549_at U81160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U81160.1 /DB_XREF=gi:2047325 /FEA=FLmRNA /CNT=6 /TID=Rn.9316.1 /TIER=FL /STK=1 /UG=Rn.9316 /LL=64516 /UG_GENE=Vsp45a /DEF=Rattus norvegicus vesicular transport protein rvps45 mRNA, complete cds. /PROD=rvps45 /FL=gb:U81160.1 U81160 vacuolar protein sorting 45 homolog (S. cerevisiae) Vps45 64516 NM_172072 0006810 // transport // inferred from electronic annotation /// 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0000139 // Golgi membrane // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0010008 // endosome membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1370550_at U31554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U31554.1 /DB_XREF=gi:951175 /FEA=FLmRNA /CNT=6 /TID=Rn.10176.1 /TIER=FL /STK=1 /UG=Rn.10176 /LL=29561 /UG_GENE=Lsamp /DEF=Rattus norvegicus limbic system-associated membrane protein mRNA, complete cds. /PROD=limbic system-associated membrane protein /FL=gb:U31554.1 U31554 limbic system-associated membrane protein Lsamp 29561 NM_017242 0007155 // cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 1370551_a_at AB000817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB000817.2 /DB_XREF=gi:4521273 /FEA=FLmRNA /CNT=5 /TID=Rn.22449.1 /TIER=FL /STK=1 /UG=Rn.22449 /LL=29744 /UG_GENE=Sema6c /DEF=Rattus norvegicus mRNA for semaphorin Y, complete cds. /PROD=semaphorin Y /FL=gb:AB000817.2 AB000817 sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C Sema6c 29744 NM_017308 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0030215 // semaphorin receptor binding // not recorded 1370552_at AB023634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB023634.1 /DB_XREF=gi:5478792 /FEA=FLmRNA /CNT=5 /TID=Rn.35515.1 /TIER=FL /STK=1 /UG=Rn.35515 /DEF=Rattus norvegicus mRNA for Cacalmodulin-dependent protein kinase phosphatase, complete cds. /PROD=Cacalmodulin-dependent protein kinasephosphatase /FL=gb:AB023634.1 AB023634 protein phosphatase 1F (PP2C domain containing) Ppm1f 287931 NM_175755 0006470 // protein dephosphorylation // traceable author statement /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // traceable author statement /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370553_at L20823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L20823.1 /DB_XREF=gi:349312 /FEA=FLmRNA /CNT=5 /TID=Rn.10623.1 /TIER=FL /STK=1 /UG=Rn.10623 /LL=25130 /UG_GENE=Epim /DEF=Rattus norvegicus syntaxin 2 mRNA, complete cds. /PROD=syntaxin 2 /FL=gb:L20823.1 gb:L20889.1 gb:L20888.1 L20823 syntaxin 2 Stx2 25130 NM_012748 0000910 // cytokinesis // inferred from direct assay /// 0000920 // cytokinetic cell separation // inferred from mutant phenotype /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006903 // vesicle targeting // traceable author statement /// 0006906 // vesicle fusion // traceable author statement /// 0007340 // acrosome reaction // inferred from electronic annotation /// 0007340 // acrosome reaction // not recorded /// 0016192 // vesicle-mediated transport // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0030033 // microvillus assembly // inferred from direct assay /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // inferred from mutant phenotype /// 0045026 // plasma membrane fusion // inferred from mutant phenotype /// 0046907 // intracellular transport // traceable author statement /// 0048546 // digestive tract morphogenesis // inferred from mutant phenotype 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0030133 // transport vesicle // inferred from direct assay /// 0030496 // midbody // inferred from direct assay /// 0031201 // SNARE complex // traceable author statement 0000149 // SNARE binding // inferred from mutant phenotype /// 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded 1370554_at AB043959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB043959.1 /DB_XREF=gi:13928522 /GEN=uchl3 /FEA=FLmRNA /CNT=5 /TID=Rn.46952.1 /TIER=FL /STK=1 /UG=Rn.46952 /LL=114094 /DEF=Rattus norvegicus uchl3 mRNA for ubiqutin carboxyl-terminal hydrolase l3, complete cds. /PROD=ubiqutin carboxyl-terminal hydrolase l3 /FL=gb:AB043959.1 AB043959 ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) Uchl3 498560 NM_001110165 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1370555_at AF078779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF078779.1 /DB_XREF=gi:3800829 /FEA=FLmRNA /CNT=7 /TID=Rn.18624.1 /TIER=FL /STK=1 /UG=Rn.18624 /DEF=Rattus norvegicus putative four repeat ion channel mRNA, complete cds. /PROD=putative four repeat ion channel /FL=gb:AF078779.1 AF078779 sodium leak channel, non-selective Nalcn 266760 NM_153630 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // inferred from electronic annotation 1370556_at M24104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M24104.1 /DB_XREF=gi:207628 /FEA=FLmRNA /CNT=7 /TID=Rn.31977.2 /TIER=FL /STK=1 /UG=Rn.31977 /LL=24803 /UG_GENE=Vamp2 /UG_TITLE=Vesicle-associated membrane protein (synaptobrevin 2) /DEF=Rat vesicle associated membrane protein (VAMP-1) mRNA, complete cds. /FL=gb:M24104.1 M24104 vesicle-associated membrane protein 1 Vamp1 25624 NM_013090 0006886 // intracellular protein transport // traceable author statement /// 0016192 // vesicle-mediated transport // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // not recorded 1370557_a_at M84203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M84203.1 /DB_XREF=gi:206916 /GEN=KSHIIIA3 /FEA=FLmRNA /CNT=6 /TID=Rn.9733.2 /TIER=FL /STK=1 /UG=Rn.9733 /DEF=Rattus norvegicus K+ channel protein (KSHIIIA3) mRNA, complete cds. /PROD=K+ channel protein /FL=gb:M84203.1 M84203 potassium voltage gated channel, Shaw-related subfamily, member 2 Kcnc2 246153 NM_139216 /// NM_139217 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1370558_a_at BF400847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400847 /DB_XREF=gi:11388787 /DB_XREF=UI-R-CA0-bhf-h-08-0-UI.s1 /CLONE=UI-R-CA0-bhf-h-08-0-UI /FEA=FLmRNA /CNT=6 /TID=Rn.9733.2 /TIER=ConsEnd /STK=3 /UG=Rn.9733 /UG_TITLE=Rattus norvegicus K+ channel protein (KSHIIIA3) mRNA, complete cds /FL=gb:M84203.1 BF400847 potassium voltage gated channel, Shaw-related subfamily, member 2 Kcnc2 246153 NM_139216 /// NM_139217 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1370559_at BF400847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400847 /DB_XREF=gi:11388787 /DB_XREF=UI-R-CA0-bhf-h-08-0-UI.s1 /CLONE=UI-R-CA0-bhf-h-08-0-UI /FEA=FLmRNA /CNT=6 /TID=Rn.9733.2 /TIER=ConsEnd /STK=3 /UG=Rn.9733 /UG_TITLE=Rattus norvegicus K+ channel protein (KSHIIIA3) mRNA, complete cds /FL=gb:M84203.1 BF400847 potassium voltage gated channel, Shaw-related subfamily, member 2 Kcnc2 246153 NM_139216 /// NM_139217 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1370560_at AF277902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF277902.1 /DB_XREF=gi:12483903 /FEA=FLmRNA /CNT=5 /TID=Rn.41926.1 /TIER=FL /STK=1 /UG=Rn.41926 /DEF=Rattus norvegicus zinc finger protein HIT-39 mRNA, complete cds. /PROD=zinc finger protein HIT-39 /FL=gb:AF277902.1 AF277902 zinc finger protein 689 Znf689 286996 NM_173330 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370561_at AF248543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF248543.1 /DB_XREF=gi:9082159 /FEA=FLmRNA /CNT=5 /TID=Rn.37737.1 /TIER=FL /STK=1 /UG=Rn.37737 /LL=171553 /UG_GENE=LOC171553 /DEF=Rattus norvegicus iGb3 synthase mRNA, complete cds. /PROD=iGb3 synthase /FL=gb:AF248543.1 AF248543 alpha 1,3-galactosyltransferase 2 A3galt2 171553 NM_138524 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006688 // glycosphingolipid biosynthetic process // inferred from direct assay 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from direct assay /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047276 // N-acetyllactosaminide 3-alpha-galactosyltransferase activity // inferred from electronic annotation 1370562_at M11596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M11596.1 /DB_XREF=gi:203232 /FEA=FLmRNA /CNT=5 /TID=Rn.10741.1 /TIER=FL /STK=1 /UG=Rn.10741 /LL=171519 /UG_GENE=Calcb /UG_TITLE=calcitonin-related polypeptide, beta /DEF=Rat beta-type calcitonin gene-related peptide mRNA, complete cds. /FL=gb:M11596.1 M11596 calcitonin-related polypeptide, beta Calcb 171519 NM_138513 0042311 // vasodilation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation 1370563_at D17310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D17310.1 /DB_XREF=gi:450472 /FEA=FLmRNA /CNT=4 /TID=Rn.10021.1 /TIER=FL /STK=1 /UG=Rn.10021 /DEF=Rattus norvegicus mRNA for steroid 3-alpha-dehydrogenase, complete cds. /PROD=steroid 3-alpha-dehydrogenase /FL=gb:M64393.1 gb:D17310.1 D17310 aldo-keto reductase family 1, member C14 Akr1c14 191574 NM_138547 0008152 // metabolic process // not recorded /// 0008202 // steroid metabolic process // traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0016229 // steroid dehydrogenase activity // inferred from mutant phenotype /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0047023 // 3(or 17)-alpha-hydroxysteroid dehydrogenase activity // inferred from electronic annotation /// 0047023 // 3(or 17)-alpha-hydroxysteroid dehydrogenase activity // not recorded /// 0047026 // 3-alpha-hydroxysteroid dehydrogenase (A-specific) activity // inferred from electronic annotation 1370564_at L12407 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L12407.1 /DB_XREF=gi:294539 /FEA=FLmRNA /CNT=4 /TID=Rn.10912.1 /TIER=FL /STK=1 /UG=Rn.10912 /LL=25699 /UG_GENE=Dbh /DEF=Rattus norvegicus dopamine beta-hydroxylase mRNA, complete cds. /PROD=dopamine beta-hydroxylase /FL=gb:L12407.1 L12407 dopamine beta-hydroxylase (dopamine beta-monooxygenase) Dbh 25699 NM_013158 0001816 // cytokine production // inferred from electronic annotation /// 0001816 // cytokine production // not recorded /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0001974 // blood vessel remodeling // not recorded /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0001975 // response to amphetamine // not recorded /// 0002443 // leukocyte mediated immunity // inferred from electronic annotation /// 0002443 // leukocyte mediated immunity // not recorded /// 0006548 // histidine catabolic process // inferred from electronic annotation /// 0006584 // catecholamine metabolic process // inferred by curator /// 0006584 // catecholamine metabolic process // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from expression pattern /// 0007613 // memory // inferred from electronic annotation /// 0007613 // memory // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008306 // associative learning // not recorded /// 0008306 // associative learning // inferred from electronic annotation /// 0008542 // visual learning // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0009987 // cellular process // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042309 // homoiothermy // inferred from electronic annotation /// 0042309 // homoiothermy // not recorded /// 0042420 // dopamine catabolic process // inferred from electronic annotation /// 0042420 // dopamine catabolic process // not recorded /// 0042421 // norepinephrine biosynthetic process // inferred from mutant phenotype /// 0042421 // norepinephrine biosynthetic process // not recorded /// 0042421 // norepinephrine biosynthetic process // traceable author statement /// 0042421 // norepinephrine biosynthetic process // inferred from electronic annotation /// 0042423 // catecholamine biosynthetic process // inferred from electronic annotation /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042593 // glucose homeostasis // not recorded /// 0042596 // fear response // inferred from electronic annotation /// 0042596 // fear response // not recorded /// 0042711 // maternal behavior // inferred from electronic annotation /// 0042711 // maternal behavior // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0045907 // positive regulation of vasoconstriction // inferred from electronic annotation /// 0045907 // positive regulation of vasoconstriction // not recorded /// 0046333 // octopamine metabolic process // inferred from mutant phenotype /// 0048149 // behavioral response to ethanol // inferred from electronic annotation /// 0048149 // behavioral response to ethanol // not recorded /// 0048265 // response to pain // inferred from electronic annotation /// 0048265 // response to pain // not recorded /// 0050900 // leukocyte migration // inferred from electronic annotation /// 0050900 // leukocyte migration // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030658 // transport vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0034466 // chromaffin granule lumen // inferred from electronic annotation /// 0042584 // chromaffin granule membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004500 // dopamine beta-monooxygenase activity // inferred from direct assay /// 0004500 // dopamine beta-monooxygenase activity // inferred from mutant phenotype /// 0004500 // dopamine beta-monooxygenase activity // traceable author statement /// 0004500 // dopamine beta-monooxygenase activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from mutant phenotype /// 0005507 // copper ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370565_at AF057564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF057564.1 /DB_XREF=gi:3063656 /FEA=FLmRNA /CNT=4 /TID=Rn.23540.1 /TIER=FL /STK=1 /UG=Rn.23540 /DEF=Rattus norvegicus putative retrovirus-related gag protein mRNA, complete cds. /PROD=putative retrovirus-related gag protein /FL=gb:AF057564.1 AF057564 0019028 // viral capsid // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 1370566_at U33500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U33500.1 /DB_XREF=gi:1072045 /FEA=FLmRNA /CNT=4 /TID=Rn.37873.1 /TIER=FL /STK=1 /UG=Rn.37873 /DEF=Rattus norvegicus retinol dehydrogenase type II mRNA, complete cds. /PROD=retinol dehydrogenase type II /FL=gb:U33500.1 U33500 retinol dehydrogenase 2 Rdh2 299511 NM_199208 0001523 // retinoid metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // not recorded /// 0042572 // retinol metabolic process // inferred from direct assay /// 0042573 // retinoic acid metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004745 // retinol dehydrogenase activity // inferred from direct assay /// 0004745 // retinol dehydrogenase activity // not recorded /// 0004745 // retinol dehydrogenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016229 // steroid dehydrogenase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1370567_at M32061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M32061.1 /DB_XREF=gi:202589 /GEN=RNG-alpha-2 /FEA=FLmRNA /CNT=6 /TID=Rn.10296.1 /TIER=FL /STK=1 /UG=Rn.10296 /LL=24174 /DEF=Rat alpha-2B-adrenergic receptor (RNG-alpha-2) mRNA, complete cds. /PROD=alpha-2B-adrenergic receptor /FL=gb:M32061.1 M32061 adrenergic, alpha-2B-, receptor Adra2b 24174 NM_138505 0000165 // MAPKKK cascade // not recorded /// 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000187 // activation of MAPK activity // inferred from mutant phenotype /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0003056 // regulation of vascular smooth muscle contraction // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0032148 // activation of protein kinase B activity // not recorded /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045777 // positive regulation of blood pressure // inferred from mutant phenotype /// 0070474 // positive regulation of uterine smooth muscle contraction // inferred from mutant phenotype 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004935 // adrenergic receptor activity // inferred from electronic annotation /// 0004935 // adrenergic receptor activity // not recorded /// 0004938 // alpha2-adrenergic receptor activity // inferred from direct assay /// 0004938 // alpha2-adrenergic receptor activity // not recorded /// 0004938 // alpha2-adrenergic receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051379 // epinephrine binding // not recorded 1370568_at M58316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M58316.1 /DB_XREF=gi:202585 /FEA=FLmRNA /CNT=6 /TID=Rn.10297.1 /TIER=FL /STK=1 /UG=Rn.10297 /LL=24175 /UG_GENE=Adra2c /DEF=Rat alpha-2B-adrenergic receptor mRNA, complete cds. /PROD=alpha-2B-adrenergic receptor /FL=gb:M58316.1 M58316 adrenergic, alpha-2C-, receptor Adra2c 24175 NM_138506 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0032148 // activation of protein kinase B activity // not recorded /// 0043406 // positive regulation of MAP kinase activity // not recorded /// 0045666 // positive regulation of neuron differentiation // not recorded 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // not recorded /// 0004935 // adrenergic receptor activity // inferred from electronic annotation /// 0004938 // alpha2-adrenergic receptor activity // inferred from mutant phenotype /// 0004938 // alpha2-adrenergic receptor activity // not recorded /// 0004938 // alpha2-adrenergic receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0031694 // alpha-2A adrenergic receptor binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded /// 0051379 // epinephrine binding // not recorded 1370569_at BF565001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565001 /DB_XREF=gi:11674731 /DB_XREF=UI-R-BS0-amq-g-02-0-UI.r1 /CLONE=UI-R-BS0-amq-g-02-0-UI /FEA=FLmRNA /CNT=5 /TID=Rn.10004.2 /TIER=ConsEnd /STK=0 /UG=Rn.10004 /LL=24627 /UG_GENE=Pde4d /UG_TITLE=Phosphodiesterase 4D, cAMP-specific (dunce (Drosophila)-homolog phosphodiesterase E3) /FL=gb:U09455.1 BF565001 phosphodiesterase 4D, cAMP-specific (phosphodiesterase E3 dunce homolog, Drosophila) Pde4d 24627 NM_001113328 /// NM_001113329 /// NM_001113332 /// NM_001113334 /// NM_017032 0006198 // cAMP catabolic process // inferred from direct assay /// 0006198 // cAMP catabolic process // inferred from mutant phenotype /// 0006198 // cAMP catabolic process // not recorded /// 0006939 // smooth muscle contraction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007613 // memory // inferred from expression pattern /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0010738 // regulation of protein kinase A signaling cascade // inferred from mutant phenotype /// 0043623 // cellular protein complex assembly // inferred from direct assay 0000267 // cell fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030016 // myofibril // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004112 // cyclic-nucleotide phosphodiesterase activity // inferred from direct assay /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from direct assay /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from mutant phenotype /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030552 // cAMP binding // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation 1370570_at AF016296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF016296.1 /DB_XREF=gi:2367638 /FEA=FLmRNA /CNT=4 /TID=Rn.10815.1 /TIER=FL /STK=1 /UG=Rn.10815 /DEF=Rattus norvegicus neuropilin mRNA, complete cds. /PROD=neuropilin /FL=gb:AF018957.1 gb:AF016296.1 AF016296 neuropilin 1 Nrp1 246331 NM_145098 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // non-traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // inferred from mutant phenotype /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0007413 // axonal fasciculation // inferred from electronic annotation /// 0007413 // axonal fasciculation // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0009611 // response to wounding // inferred from expression pattern /// 0016358 // dendrite development // inferred from electronic annotation /// 0016358 // dendrite development // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030517 // negative regulation of axon extension // not recorded /// 0030517 // negative regulation of axon extension // inferred from electronic annotation /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from mutant phenotype /// 0048010 // vascular endothelial growth factor receptor signaling pathway // not recorded /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0048843 // negative regulation of axon extension involved in axon guidance // inferred from mutant phenotype /// 0048843 // negative regulation of axon extension involved in axon guidance // not recorded /// 0048843 // negative regulation of axon extension involved in axon guidance // inferred from electronic annotation /// 0060666 // dichotomous subdivision of terminal units involved in salivary gland branching // inferred from electronic annotation /// 0060666 // dichotomous subdivision of terminal units involved in salivary gland branching // not recorded 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0030426 // growth cone // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005021 // vascular endothelial growth factor receptor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017154 // semaphorin receptor activity // inferred from mutant phenotype /// 0017154 // semaphorin receptor activity // not recorded /// 0017154 // semaphorin receptor activity // traceable author statement /// 0017154 // semaphorin receptor activity // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1370571_at AF239219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF239219.1 /DB_XREF=gi:13183122 /GEN=Pgt2 /FEA=FLmRNA /CNT=4 /TID=Rn.67076.1 /TIER=FL /STK=1 /UG=Rn.67076 /DEF=Rattus norvegicus prostaglandin transporter subtype 2 (Pgt2) mRNA, complete cds. /PROD=prostaglandin transporter subtype 2 /FL=gb:AF239219.1 AF239219 solute carrier organic anion transporter family, member 3a1 Slco3a1 140915 NM_177481 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015732 // prostaglandin transport // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1370572_at AY030276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY030276.1 /DB_XREF=gi:14029134 /GEN=Ieda /FEA=FLmRNA /CNT=3 /TID=Rn.12958.1 /TIER=FL /STK=1 /UG=Rn.12958 /DEF=Rattus norvegicus orphan seven transmembrane receptor (Ieda) mRNA, complete cds. /PROD=orphan seven transmembrane receptor /FL=gb:AY030276.1 AY030276 G protein-coupled receptor 149 Gpr149 192251 NM_138891 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1370573_at AF067650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF067650.1 /DB_XREF=gi:3283372 /GEN=SarDH /FEA=FLmRNA /CNT=3 /TID=Rn.37484.1 /TIER=FL /STK=1 /UG=Rn.37484 /LL=114123 /DEF=Rattus norvegicus sarcosine dehydrogenase (SarDH) mRNA, complete cds. /PROD=sarcosine dehydrogenase /FL=gb:AF067650.1 AF067650 sarcosine dehydrogenase Sardh 114123 NM_053664 0006545 // glycine biosynthetic process // traceable author statement /// 0006546 // glycine catabolic process // inferred from electronic annotation /// 0042426 // choline catabolic process // non-traceable author statement /// 0042426 // choline catabolic process // traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0004047 // aminomethyltransferase activity // inferred from electronic annotation /// 0008480 // sarcosine dehydrogenase activity // traceable author statement /// 0008480 // sarcosine dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // non-traceable author statement /// 0050660 // FAD or FADH2 binding // inferred from direct assay 1370574_a_at D38468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D38468.1 /DB_XREF=gi:2190165 /FEA=FLmRNA /CNT=3 /TID=Rn.53971.2 /TIER=FL /STK=1 /UG=Rn.53971 /LL=25528 /UG_GENE=Ptpns1 /DEF=Rattus norvegicus mRNA for BIT, complete cds. /PROD=BIT /FL=gb:D38468.1 D38468 signal-regulatory protein alpha Sirpa 25528 NM_013016 0006910 // phagocytosis, recognition // inferred from electronic annotation /// 0006910 // phagocytosis, recognition // not recorded /// 0006911 // phagocytosis, engulfment // inferred from electronic annotation /// 0006911 // phagocytosis, engulfment // not recorded /// 0006928 // cellular component movement // inferred from electronic annotation /// 0006928 // cellular component movement // not recorded /// 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0007010 // cytoskeleton organization // not recorded /// 0007015 // actin filament organization // inferred from electronic annotation /// 0007015 // actin filament organization // not recorded /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0016477 // cell migration // inferred from direct assay /// 0050766 // positive regulation of phagocytosis // inferred from electronic annotation /// 0050766 // positive regulation of phagocytosis // not recorded 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0045309 // protein phosphorylated amino acid binding // not recorded 1370575_a_at D50734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D50734.1 /DB_XREF=gi:1228066 /FEA=FLmRNA /CNT=3 /TID=Rn.6290.2 /TIER=FL /STK=1 /UG=Rn.6290 /LL=58961 /UG_GENE=Oazi /DEF=Rat mRNA of antizyme inhibitor, complete cds. /PROD=antizyme inhibitor /FL=gb:D50734.1 D50734 antizyme inhibitor 1 Azin1 58961 NM_022585 0006596 // polyamine biosynthetic process // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008073 // ornithine decarboxylase inhibitor activity // inferred from direct assay /// 0042978 // ornithine decarboxylase activator activity // inferred from electronic annotation /// 0042978 // ornithine decarboxylase activator activity // not recorded 1370576_at AF181992 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF181992.1 /DB_XREF=gi:6651426 /FEA=FLmRNA /CNT=3 /TID=Rn.2064.1 /TIER=FL /STK=1 /UG=Rn.2064 /DEF=Rattus norvegicus dynein light intermediate chain 1 mRNA, complete cds. /PROD=dynein light intermediate chain 1 /FL=gb:AF181992.1 AF181992 dynein cytoplasmic 1 light intermediate chain 1 Dync1li1 252902 NM_145772 0006810 // transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007052 // mitotic spindle organization // traceable author statement /// 0046605 // regulation of centrosome cycle // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation /// 0090267 // positive regulation of mitotic cell cycle spindle assembly checkpoint // not recorded /// 0090267 // positive regulation of mitotic cell cycle spindle assembly checkpoint // inferred from sequence or structural similarity /// 0090267 // positive regulation of mitotic cell cycle spindle assembly checkpoint // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // not recorded /// 0000776 // kinetochore // inferred from sequence or structural similarity /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0000922 // spindle pole // not recorded /// 0000922 // spindle pole // inferred from sequence or structural similarity /// 0000922 // spindle pole // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005868 // cytoplasmic dynein complex // not recorded /// 0005868 // cytoplasmic dynein complex // inferred from sequence or structural similarity /// 0005868 // cytoplasmic dynein complex // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0030286 // dynein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from electronic annotation 1370577_at U67083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U67083.1 /DB_XREF=gi:1531650 /FEA=FLmRNA /CNT=3 /TID=Rn.10664.1 /TIER=FL /STK=1 /UG=Rn.10664 /DEF=Rattus norvegicus KRAB-zinc finger protein KZF-2 mRNA, complete cds. /PROD=KRAB-zinc finger protein KZF-2 /FL=gb:U67083.1 U67083 zinc finger protein 455 Zfp455 286979 NM_173314 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007530 // sex determination // not recorded /// 0016481 // negative regulation of transcription // not recorded 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370578_at U92010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U92010.1 /DB_XREF=gi:1928885 /GEN=lin-10 /FEA=FLmRNA /CNT=3 /TID=Rn.9778.1 /TIER=FL /STK=1 /UG=Rn.9778 /DEF=Rattus norvegicus lin-10 protein homolog (lin-10) mRNA, complete cds. /PROD=lin-10 protein homolog /FL=gb:U92010.1 U92010 similar to RIKEN cDNA D230025D16Rik RGD621098 207123 NM_139040 0043001 // Golgi to plasma membrane protein transport // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030672 // synaptic vesicle membrane // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035254 // glutamate receptor binding // inferred from direct assay 1370579_at U53513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U53513.1 /DB_XREF=gi:1289335 /FEA=FLmRNA /CNT=3 /TID=Rn.34880.1 /TIER=FL /STK=1 /UG=Rn.34880 /DEF=Rattus norvegicus glycine-, glutamate-, thienylcyclohexylpiperidine-binding protein mRNA, complete cds. /PROD=glycine-, glutamate-,thienylcyclohexylpiperidine-binding protein /FL=gb:U53513.1 U53513 glycine-, glutamate-, thienylcyclohexylpiperidine-binding protein LOC246295 246295 NM_145082 /// XM_001076921 /// XM_575968 0005488 // binding // inferred from electronic annotation /// 0016594 // glycine binding // inferred from mutant phenotype /// 0016595 // glutamate binding // inferred from mutant phenotype /// 0016596 // thienylcyclohexylpiperidine binding // inferred from mutant phenotype 1370580_a_at M18336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M18336.1 /DB_XREF=gi:203781 /FEA=FLmRNA /CNT=7 /TID=Rn.7245.1 /TIER=FL /STK=1 /UG=Rn.7245 /LL=29296 /UG_GENE=Cyp2c37 /UG_TITLE=cytochrome P450, 2c37 /DEF=Rat cytochrome P450 processed pseudogene mRNA, complete cds. /FL=gb:M18336.1 M18336 cytochrome P450, family 2, subfamily c, polypeptide 6 /// cytochrome P450-like Cyp2c6 /// LOC293989 246070 /// 293989 NM_001013904 /// XM_001066767 0008202 // steroid metabolic process // not recorded /// 0016098 // monoterpenoid metabolic process // not recorded /// 0017144 // drug metabolic process // non-traceable author statement /// 0017144 // drug metabolic process // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042738 // exogenous drug catabolic process // not recorded /// 0046483 // heterocycle metabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004497 // monooxygenase activity // non-traceable author statement /// 0004497 // monooxygenase activity // not recorded /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008395 // steroid hydroxylase activity // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0019825 // oxygen binding // not recorded /// 0019899 // enzyme binding // not recorded /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1370581_at AF348523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF348523.1 /DB_XREF=gi:19070524 /FEA=FLmRNA /CNT=6 /TID=Rn.44476.2 /TIER=ConsEnd /STK=0 /UG=Rn.44476 /LL=63851 /UG_GENE=Fgf14 /DEF=Rattus norvegicus fibroblast growth factor-like factor 4D mRNA, partial cds. /PROD=fibroblast growth factor-like factor-4D /FL=gb:AB008908.1 AF348523 fibroblast growth factor 14 Fgf14 63851 NM_022223 0007254 // JNK cascade // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation 0005104 // fibroblast growth factor receptor binding // not recorded /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008201 // heparin binding // not recorded 1370582_a_at U51195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U51195.1 /DB_XREF=gi:1256431 /FEA=FLmRNA /CNT=5 /TID=Rn.11368.3 /TIER=FL /STK=1 /UG=Rn.11368 /LL=29160 /UG_GENE=Amel /DEF=Rattus norvegicus tooth enamel amelogenin mRNA, complete cds. /PROD=amelogenin /FL=gb:U51195.1 U51195 amelogenin X chromosome Amelx 29160 NM_019154 0007155 // cell adhesion // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from expression pattern /// 0008283 // cell proliferation // not recorded /// 0031214 // biomineral tissue development // inferred from electronic annotation /// 0034505 // tooth mineralization // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from expression pattern /// 0070166 // enamel mineralization // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005604 // basement membrane // not recorded /// 0005604 // basement membrane // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0030139 // endocytic vesicle // inferred from expression pattern /// 0031012 // extracellular matrix // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0030345 // structural constituent of tooth enamel // inferred from direct assay /// 0030345 // structural constituent of tooth enamel // not recorded /// 0030345 // structural constituent of tooth enamel // traceable author statement /// 0042802 // identical protein binding // inferred from direct assay /// 0042802 // identical protein binding // not recorded /// 0043498 // cell surface binding // not recorded /// 0046848 // hydroxyapatite binding // not recorded 1370583_s_at AY082609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY082609.1 /DB_XREF=gi:19743729 /FEA=FLmRNA /CNT=4 /TID=Rn.82691.1 /TIER=FL /STK=1 /UG=Rn.82691 /LL=24646 /UG_GENE=Abcb1 /DEF=Rattus norvegicus ATP-binding cassette protein B1b mRNA, complete cds. /PROD=ATP-binding cassette protein B1b /FL=gb:AY082609.1 AY082609 ATP-binding cassette, sub-family B (MDR/TAP), member 1A /// ATP-binding cassette, sub-family B (MDR/TAP), member 1B Abcb1a /// Abcb1b 170913 /// 24646 NM_012623 /// NM_133401 0006200 // ATP catabolic process // not recorded /// 0006810 // transport // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006855 // drug transmembrane transport // inferred from direct assay /// 0007595 // lactation // inferred from expression pattern /// 0010212 // response to ionizing radiation // inferred from expression pattern /// 0014045 // establishment of endothelial blood-brain barrier // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0015893 // drug transport // inferred from mutant phenotype /// 0015893 // drug transport // not recorded /// 0033280 // response to vitamin D // inferred from expression pattern /// 0042493 // response to drug // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0046685 // response to arsenic // inferred from expression pattern /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0055085 // transmembrane transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0046581 // intercellular canaliculus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008559 // xenobiotic-transporting ATPase activity // inferred from electronic annotation /// 0015238 // drug transmembrane transporter activity // inferred from mutant phenotype /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042623 // ATPase activity, coupled // not recorded /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 1370584_a_at M69045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M69045.1 /DB_XREF=gi:202567 /FEA=FLmRNA /CNT=4 /TID=Rn.32078.2 /TIER=FL /STK=1 /UG=Rn.32078 /LL=29290 /UG_GENE=Adora1 /DEF=Rat A1-adenosine receptor mRNA, complete cds. /PROD=A1 adenosine receptor /FL=gb:M64299.1 gb:M69045.1 gb:AF042079.1 gb:AB001089.1 M69045 adenosine A1 receptor Adora1 29290 NM_017155 0000186 // activation of MAPKK activity // inferred from direct assay /// 0001659 // temperature homeostasis // inferred from mutant phenotype /// 0002087 // regulation of respiratory gaseous exchange by neurological system process // inferred from mutant phenotype /// 0002686 // negative regulation of leukocyte migration // inferred from electronic annotation /// 0002686 // negative regulation of leukocyte migration // not recorded /// 0002793 // positive regulation of peptide secretion // inferred from mutant phenotype /// 0003093 // regulation of glomerular filtration // inferred from electronic annotation /// 0003093 // regulation of glomerular filtration // not recorded /// 0006612 // protein targeting to membrane // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0014050 // negative regulation of glutamate secretion // inferred from direct assay /// 0016042 // lipid catabolic process // inferred from mutant phenotype /// 0030147 // natriuresis // inferred from mutant phenotype /// 0032229 // negative regulation of synaptic transmission, GABAergic // inferred from direct assay /// 0032229 // negative regulation of synaptic transmission, GABAergic // inferred from mutant phenotype /// 0032244 // positive regulation of nucleoside transport // inferred from direct assay /// 0032900 // negative regulation of neurotrophin production // inferred from mutant phenotype /// 0035307 // positive regulation of protein dephosphorylation // inferred from direct assay /// 0042312 // regulation of vasodilation // inferred from direct assay /// 0042321 // negative regulation of circadian sleep/wake cycle, sleep // inferred from direct assay /// 0042323 // negative regulation of circadian sleep/wake cycle, non-REM sleep // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0043268 // positive regulation of potassium ion transport // inferred from direct assay /// 0045741 // positive regulation of epidermal growth factor receptor activity // inferred from mutant phenotype /// 0045777 // positive regulation of blood pressure // inferred from direct assay /// 0045822 // negative regulation of heart contraction // inferred from mutant phenotype /// 0045908 // negative regulation of vasodilation // inferred from direct assay /// 0046888 // negative regulation of hormone secretion // inferred from mutant phenotype /// 0048167 // regulation of synaptic plasticity // inferred from mutant phenotype /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // not recorded /// 0050890 // cognition // inferred from mutant phenotype /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // inferred from mutant phenotype /// 0050995 // negative regulation of lipid catabolic process // inferred from direct assay /// 0051967 // negative regulation of synaptic transmission, glutamatergic // inferred from direct assay /// 0055117 // regulation of cardiac muscle contraction // inferred from mutant phenotype /// 0055118 // negative regulation of cardiac muscle contraction // inferred from mutant phenotype /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from mutant phenotype /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060087 // relaxation of vascular smooth muscle // inferred from mutant phenotype /// 0070256 // negative regulation of mucus secretion // inferred from electronic annotation /// 0070256 // negative regulation of mucus secretion // not recorded 0005783 // endoplasmic reticulum // inferred from mutant phenotype /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030673 // axolemma // inferred from direct assay /// 0032279 // asymmetric synapse // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0044297 // cell body // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0048786 // presynaptic active zone // inferred from direct assay 0001609 // adenosine receptor activity, G-protein coupled // inferred from direct assay /// 0001609 // adenosine receptor activity, G-protein coupled // traceable author statement /// 0001609 // adenosine receptor activity, G-protein coupled // inferred from electronic annotation /// 0001664 // G-protein-coupled receptor binding // inferred from physical interaction /// 0001883 // purine nucleoside binding // inferred from physical interaction /// 0004629 // phospholipase C activity // inferred from mutant phenotype /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031683 // G-protein beta/gamma-subunit binding // inferred from direct assay /// 0032795 // heterotrimeric G-protein binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1370585_a_at X04440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X04440.1 /DB_XREF=gi:56960 /FEA=FLmRNA /CNT=4 /TID=Rn.9745.2 /TIER=ConsEnd /STK=0 /UG=Rn.9745 /LL=25023 /UG_GENE=Prkcb1 /UG_TITLE=Protein kinase C beta /DEF=Rat mRNA for protein kinase C type II. /FL=gb:M13706.1 X04440 protein kinase C, beta Prkcb 25023 NM_001172305 /// NM_012713 0006350 // transcription // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006816 // calcium ion transport // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0014059 // regulation of dopamine secretion // inferred from mutant phenotype /// 0016568 // chromatin modification // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // non-traceable author statement /// 0033280 // response to vitamin D // inferred from expression pattern /// 0034339 // regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor // not recorded /// 0034339 // regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor // inferred from sequence or structural similarity /// 0035408 // histone H3-T6 phosphorylation // not recorded /// 0035408 // histone H3-T6 phosphorylation // inferred from sequence or structural similarity /// 0040008 // regulation of growth // inferred from mutant phenotype /// 0042113 // B cell activation // not recorded /// 0042113 // B cell activation // inferred from sequence or structural similarity /// 0042113 // B cell activation // inferred from electronic annotation /// 0042488 // positive regulation of odontogenesis of dentine-containing tooth // inferred from expression pattern /// 0042493 // response to drug // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from sequence or structural similarity /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from expression pattern /// 0050853 // B cell receptor signaling pathway // not recorded /// 0050853 // B cell receptor signaling pathway // inferred from sequence or structural similarity /// 0050853 // B cell receptor signaling pathway // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004697 // protein kinase C activity // inferred from direct assay /// 0004697 // protein kinase C activity // not recorded /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0005080 // protein kinase C binding // not recorded /// 0005246 // calcium channel regulator activity // not recorded /// 0005246 // calcium channel regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from sequence or structural similarity /// 0035403 // histone kinase activity (H3-T6 specific) // not recorded /// 0035403 // histone kinase activity (H3-T6 specific) // inferred from sequence or structural similarity /// 0042393 // histone binding // not recorded /// 0042393 // histone binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // not recorded /// 0050681 // androgen receptor binding // inferred from sequence or structural similarity 1370586_a_at AY029412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY029412.1 /DB_XREF=gi:14578562 /GEN=CaV2.3 /FEA=FLmRNA /CNT=3 /TID=Rn.10742.1 /TIER=FL /STK=1 /UG=Rn.10742 /LL=54234 /DEF=Rattus norvegicus calcium channel isoform alpha1E7 (CaV2.3) mRNA, complete cds. /PROD=calcium channel isoform alpha1E7 /FL=gb:AY029412.1 AY029412 calcium channel, voltage-dependent, R type, alpha 1E subunit Cacna1e 54234 NM_019294 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0042593 // glucose homeostasis // not recorded /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // not recorded 0005886 // plasma membrane // not recorded /// 0005891 // voltage-gated calcium channel complex // traceable author statement /// 0005891 // voltage-gated calcium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043204 // perikaryon // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // not recorded /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0008332 // low voltage-gated calcium channel activity // traceable author statement 1370587_at M83552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M83552.1 /DB_XREF=gi:3935133 /GEN=GluR7 /FEA=FLmRNA /CNT=3 /TID=Rn.74042.2 /TIER=FL /STK=1 /UG=Rn.74042 /LL=24407 /DEF=Rattus norvegicus glutamate receptor subunit kainate subtype (GluR7) mRNA, complete cds. /PROD=glutamate receptor subunit kainate subtype /FL=gb:M83552.1 gb:AF027331.1 M83552 glutamate receptor, ionotropic, kainate 3 Grik3 298521 NM_001112716 /// NM_181373 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007215 // glutamate signaling pathway // not recorded /// 0007215 // glutamate signaling pathway // inferred from electronic annotation /// 0007216 // metabotropic glutamate receptor signaling pathway // inferred from electronic annotation /// 0007216 // metabotropic glutamate receptor signaling pathway // not recorded /// 0007268 // synaptic transmission // non-traceable author statement /// 0042391 // regulation of membrane potential // inferred from direct assay /// 0042391 // regulation of membrane potential // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0051967 // negative regulation of synaptic transmission, glutamatergic // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0032839 // dendrite cytoplasm // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0001640 // adenylate cyclase inhibiting metabotropic glutamate receptor activity // inferred from electronic annotation /// 0001640 // adenylate cyclase inhibiting metabotropic glutamate receptor activity // not recorded /// 0001664 // G-protein-coupled receptor binding // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from direct assay /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // not recorded /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008066 // glutamate receptor activity // inferred from direct assay /// 0015277 // kainate selective glutamate receptor activity // inferred from electronic annotation /// 0015277 // kainate selective glutamate receptor activity // not recorded 1370588_a_at U04933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U04933.1 /DB_XREF=gi:451571 /FEA=FLmRNA /CNT=3 /TID=Rn.10419.1 /TIER=FL /STK=1 /UG=Rn.10419 /LL=29715 /UG_GENE=Slc8a1 /DEF=Rattus norvegicus Sprague-Dawley (CD-1) Na-Ca exchanger isoform NACA7 mRNA, complete cds. /PROD=Na-Ca exchanger isoform NACA7 /FL=gb:AF109164.1 gb:AY033398.1 gb:U04933.1 U04933 solute carrier family 8 (sodium/calcium exchanger), member 1 Slc8a1 29715 NM_019268 0001666 // response to hypoxia // inferred from direct assay /// 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002026 // regulation of the force of heart contraction // not recorded /// 0002028 // regulation of sodium ion transport // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // not recorded /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006816 // calcium ion transport // traceable author statement /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from mutant phenotype /// 0006950 // response to stress // inferred from expression pattern /// 0007154 // cell communication // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0007584 // response to nutrient // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0021537 // telencephalon development // inferred from expression pattern /// 0033198 // response to ATP // inferred from direct assay /// 0034220 // ion transmembrane transport // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0051924 // regulation of calcium ion transport // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060402 // calcium ion transport into cytosol // inferred from direct assay /// 0071320 // cellular response to cAMP // inferred from direct assay 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030315 // T-tubule // inferred from direct assay /// 0030315 // T-tubule // not recorded /// 0030315 // T-tubule // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from direct assay /// 0042383 // sarcolemma // not recorded /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042995 // cell projection // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0005432 // calcium:sodium antiporter activity // inferred from direct assay /// 0005432 // calcium:sodium antiporter activity // inferred from mutant phenotype /// 0005432 // calcium:sodium antiporter activity // not recorded /// 0005432 // calcium:sodium antiporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation 1370589_at AF277903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF277903.1 /DB_XREF=gi:12483905 /FEA=FLmRNA /CNT=3 /TID=Rn.64643.1 /TIER=FL /STK=1 /UG=Rn.64643 /DEF=Rattus norvegicus zinc finger protein HIT-40 mRNA, complete cds. /PROD=zinc finger protein HIT-40 /FL=gb:AF277903.1 AF277903 zinc finger protein 709 Zfp709 266773 NM_153731 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370590_at AF107723 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF107723.1 /DB_XREF=gi:6448791 /GEN=AGS3 /FEA=FLmRNA /CNT=3 /TID=Rn.53933.1 /TIER=FL /STK=1 /UG=Rn.53933 /DEF=Rattus norvegicus activator of G-protein signaling 3 (AGS3) mRNA, complete cds. /PROD=activator of G-protein signaling 3 /FL=gb:AF107723.1 AF107723 G-protein signaling modulator 1 (AGS3-like, C. elegans) Gpsm1 246254 NM_001145469 /// NM_144745 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0030154 // cell differentiation // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction 1370591_at AF059678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF059678.1 /DB_XREF=gi:3342381 /FEA=FLmRNA /CNT=3 /TID=Rn.30022.1 /TIER=FL /STK=1 /UG=Rn.30022 /DEF=Rattus norvegicus VIP-receptor-gene repressor protein mRNA, complete cds. /PROD=VIP-receptor-gene repressor protein /FL=gb:AF059678.1 AF059678 replication factor C (activator 1) 1 Rfc1 89809 NM_053547 0006260 // DNA replication // inferred from electronic annotation /// 0006297 // nucleotide-excision repair, DNA gap filling // not recorded /// 0016481 // negative regulation of transcription // inferred from mutant phenotype /// 0045941 // positive regulation of transcription // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005663 // DNA replication factor C complex // inferred from electronic annotation /// 0005663 // DNA replication factor C complex // not recorded /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003689 // DNA clamp loader activity // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // inferred from direct assay /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay 1370592_at AB019693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB019693.1 /DB_XREF=gi:3882123 /GEN=HP33 /FEA=FLmRNA /CNT=3 /TID=Rn.22745.1 /TIER=FL /STK=1 /UG=Rn.22745 /LL=171179 /UG_TITLE=HP33 /DEF=Rattus norvegicus HP33 mRNA, complete cds. /FL=gb:AB019693.1 AB019693 kidney expressed gene 1 Keg1 171179 NM_134330 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005813 // centrosome // non-traceable author statement /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0043015 // gamma-tubulin binding // non-traceable author statement /// 0047961 // glycine N-acyltransferase activity // inferred from electronic annotation 1370593_at U09742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U09742.1 /DB_XREF=gi:498863 /GEN=CYP3A2 /FEA=FLmRNA /CNT=3 /TID=Rn.37424.1 /TIER=FL /STK=1 /UG=Rn.37424 /DEF=Rattus norvegicus Sprague Dawley testosterone 6-beta-hydroxylase, cytochrome P4506-beta-A, (CYP3A2) mRNA, complete cds. /PROD=testosterone 6-beta-hydroxylase /FL=gb:U09742.1 gb:M13646.1 U09742 cytochrome P450, family 3, subfamily a, polypeptide 2 Cyp3a2 266682 NM_153312 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050649 // testosterone 6-beta-hydroxylase activity // inferred from mutant phenotype /// 0070330 // aromatase activity // inferred from electronic annotation 1370594_at AF322217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF322217.1 /DB_XREF=gi:13810899 /FEA=FLmRNA /CNT=3 /TID=Rn.21042.1 /TIER=FL /STK=1 /UG=Rn.21042 /DEF=Rattus norvegicus inhibin binding protein short isoform mRNA, complete cds; alternatively spliced. /PROD=inhibin binding protein short isoform /FL=gb:AF322217.1 AF322217 immunoglobulin superfamily, member 1 Igsf1 302822 NM_175763 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015026 // coreceptor activity // inferred from direct assay /// 0048186 // inhibin beta-A binding // inferred from electronic annotation /// 0048186 // inhibin beta-A binding // not recorded /// 0048187 // inhibin beta-B binding // inferred from electronic annotation /// 0048187 // inhibin beta-B binding // not recorded 1370595_a_at AF345444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF345444.1 /DB_XREF=gi:13492649 /FEA=FLmRNA /CNT=3 /TID=Rn.67079.1 /TIER=FL /STK=1 /UG=Rn.67079 /DEF=Rattus norvegicus potassium channel beta subunit KChIP4 mRNA, complete cds. /PROD=potassium channel beta subunit KChIP4 /FL=gb:AF345444.1 gb:AF453245.1 AF345444 Kv channel interacting protein 4 Kcnip4 259243 NM_181365 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1370596_a_at U31159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U31159.1 /DB_XREF=gi:4096359 /GEN=CR16 /FEA=FLmRNA /CNT=3 /TID=Rn.11272.1 /TIER=FL /STK=1 /UG=Rn.11272 /DEF=Rattus norvegicus SH3 domain binding protein (CR16) mRNA, alternatively spliced, complete cds. /PROD=CR16 /FL=gb:U31159.1 U31159 WAS/WASL interacting protein family, member 3 Wipf3 259242 NM_147211 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from mutant phenotype 1370597_at AF115435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF115435.1 /DB_XREF=gi:4206160 /FEA=FLmRNA /CNT=3 /TID=Rn.28533.1 /TIER=FL /STK=1 /UG=Rn.28533 /DEF=Rattus norvegicus syntaxin 17 mRNA, complete cds. /PROD=syntaxin 17 /FL=gb:AF115435.1 AF115435 syntaxin 17 Stx17 252853 NM_145723 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1370598_a_at AB073755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB073755.1 /DB_XREF=gi:18765771 /GEN=GIRK2-3 /FEA=FLmRNA /CNT=2 /TID=Rn.10185.2 /TIER=FL /STK=1 /UG=Rn.10185 /LL=25743 /DEF=Rattus norvegicus GIRK2-3 gene for GIRK2, complete cds. /PROD=GIRK2 /FL=gb:AB073755.1 gb:AB073754.1 AB073755 potassium inwardly-rectifying channel, subfamily J, member 6 Kcnj6 25743 NM_013192 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // not recorded /// 0034765 // regulation of ion transmembrane transport // not recorded /// 0042403 // thyroid hormone metabolic process // not recorded /// 0051602 // response to electrical stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0032809 // neuronal cell body membrane // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0015467 // G-protein activated inward rectifier potassium channel activity // inferred from electronic annotation /// 0015467 // G-protein activated inward rectifier potassium channel activity // not recorded 1370599_a_at L19933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L19933.1 /DB_XREF=gi:310242 /FEA=FLmRNA /CNT=2 /TID=Rn.25722.4 /TIER=FL /STK=1 /UG=Rn.25722 /LL=25529 /UG_GENE=Ptprd /DEF=Rattus norvegicus protein tyrosine phosphatase mRNA, complete cds. /PROD=protein tyrosine phosphatase /FL=gb:L12329.1 gb:L19933.1 L19933 protein tyrosine phosphatase, receptor type, S Ptprs 25529 NM_019140 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1370600_at AF038388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF038388.1 /DB_XREF=gi:3342245 /FEA=FLmRNA /CNT=2 /TID=Rn.29988.1 /TIER=FL /STK=1 /UG=Rn.29988 /DEF=Rattus norvegicus actin-filament binding protein Frabin mRNA, complete cds. /PROD=actin-filament binding protein Frabin /FL=gb:AF038388.1 AF038388 FYVE, RhoGEF and PH domain containing 4 Fgd4 246174 NM_139263 0006915 // apoptosis // not recorded /// 0007257 // activation of JUN kinase activity // inferred from direct assay /// 0007257 // activation of JUN kinase activity // inferred from mutant phenotype /// 0008360 // regulation of cell shape // inferred from mutant phenotype /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0030032 // lamellipodium assembly // inferred from electronic annotation /// 0030032 // lamellipodium assembly // not recorded /// 0030035 // microspike assembly // inferred from electronic annotation /// 0030035 // microspike assembly // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030175 // filopodium // inferred from electronic annotation /// 0030175 // filopodium // not recorded /// 0042995 // cell projection // inferred from electronic annotation 0003779 // actin binding // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from mutant phenotype 1370601_a_at AF073379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF073379.1 /DB_XREF=gi:5305434 /GEN=NR3A /FEA=FLmRNA /CNT=2 /TID=Rn.10169.1 /TIER=FL /STK=1 /UG=Rn.10169 /DEF=Rattus norvegicus N-methyl-D-aspartate receptor splice variant NR3A-2 (NR3A) mRNA, complete cds. /PROD=N-methyl-D-aspartate receptor splice variantNR3A-2 /FL=gb:AF073379.1 AF073379 glutamate receptor, ionotropic, N-methyl-D-aspartate 3A Grin3a 191573 NM_001198583 /// NM_138546 /// XM_002726524 /// XM_002726525 /// XM_002729483 /// XM_002729484 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0016358 // dendrite development // inferred from electronic annotation /// 0016358 // dendrite development // not recorded /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from direct assay /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045471 // response to ethanol // not recorded /// 0048511 // rhythmic process // inferred from direct assay /// 0060134 // prepulse inhibition // inferred from electronic annotation /// 0060134 // prepulse inhibition // not recorded /// 0070588 // calcium ion transmembrane transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // inferred from direct assay /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // not recorded /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030288 // outer membrane-bounded periplasmic space // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0045211 // postsynaptic membrane // not recorded /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from direct assay /// 0004970 // ionotropic glutamate receptor activity // traceable author statement /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from direct assay /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // not recorded /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // traceable author statement /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016594 // glycine binding // inferred from direct assay /// 0016594 // glycine binding // not recorded /// 0016594 // glycine binding // inferred from electronic annotation /// 0042165 // neurotransmitter binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0051721 // protein phosphatase 2A binding // inferred from direct assay 1370602_at U15408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U15408.1 /DB_XREF=gi:606965 /FEA=FLmRNA /CNT=2 /TID=Rn.9986.1 /TIER=FL /STK=1 /UG=Rn.9986 /DEF=Rattus norvegicus plasma membrane Ca2+-ATPase isoform 4 mRNA, complete cds and alternatively spliced variations. /PROD=plasma membrane Ca2+-ATPase isoform 4 /FL=gb:U15408.1 U15408 ATPase, Ca++ transporting, plasma membrane 4 Atp2b4 29600 NM_001005871 0003407 // neural retina development // inferred from expression pattern /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // inferred from direct assay /// 0005388 // calcium-transporting ATPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015085 // calcium ion transmembrane transporter activity // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0030165 // PDZ domain binding // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 1370603_a_at M10072 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M10072.1 /DB_XREF=gi:205140 /GEN=L-CA /FEA=FLmRNA /CNT=2 /TID=Rn.10480.1 /TIER=FL /STK=1 /UG=Rn.10480 /LL=24699 /DEF=Rat leukocyte common antigen (L-CA) mRNA, complete cds. /PROD=leukocyte common antigen /FL=gb:M10072.1 M10072 protein tyrosine phosphatase, receptor type, C Ptprc 24699 NM_001109887 /// NM_001109888 /// NM_001109889 /// NM_001109890 /// NM_138507 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0001915 // negative regulation of T cell mediated cytotoxicity // not recorded /// 0001915 // negative regulation of T cell mediated cytotoxicity // inferred from sequence or structural similarity /// 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0001916 // positive regulation of T cell mediated cytotoxicity // not recorded /// 0001960 // negative regulation of cytokine-mediated signaling pathway // not recorded /// 0001960 // negative regulation of cytokine-mediated signaling pathway // inferred from sequence or structural similarity /// 0002378 // immunoglobulin biosynthetic process // inferred from electronic annotation /// 0002378 // immunoglobulin biosynthetic process // not recorded /// 0002711 // positive regulation of T cell mediated immunity // not recorded /// 0002711 // positive regulation of T cell mediated immunity // inferred from electronic annotation /// 0002923 // regulation of humoral immune response mediated by circulating immunoglobulin // not recorded /// 0002923 // regulation of humoral immune response mediated by circulating immunoglobulin // inferred from electronic annotation /// 0002925 // positive regulation of humoral immune response mediated by circulating immunoglobulin // inferred from electronic annotation /// 0002925 // positive regulation of humoral immune response mediated by circulating immunoglobulin // not recorded /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from sequence or structural similarity /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0006470 // protein dephosphorylation // inferred from sequence or structural similarity /// 0006470 // protein dephosphorylation // traceable author statement /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007159 // leukocyte cell-cell adhesion // inferred from electronic annotation /// 0007159 // leukocyte cell-cell adhesion // not recorded /// 0010332 // response to gamma radiation // inferred from direct assay /// 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from sequence or structural similarity /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030183 // B cell differentiation // not recorded /// 0030183 // B cell differentiation // inferred from electronic annotation /// 0030217 // T cell differentiation // not recorded /// 0030217 // T cell differentiation // inferred from sequence or structural similarity /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // not recorded /// 0031953 // negative regulation of protein autophosphorylation // inferred from electronic annotation /// 0031953 // negative regulation of protein autophosphorylation // not recorded /// 0033261 // regulation of S phase // inferred from electronic annotation /// 0033261 // regulation of S phase // not recorded /// 0034113 // heterotypic cell-cell adhesion // inferred from electronic annotation /// 0034113 // heterotypic cell-cell adhesion // not recorded /// 0042098 // T cell proliferation // not recorded /// 0042098 // T cell proliferation // inferred from electronic annotation /// 0042100 // B cell proliferation // not recorded /// 0042100 // B cell proliferation // inferred from sequence or structural similarity /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from sequence or structural similarity /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0045059 // positive thymic T cell selection // inferred from electronic annotation /// 0045059 // positive thymic T cell selection // not recorded /// 0045060 // negative thymic T cell selection // inferred from electronic annotation /// 0045060 // negative thymic T cell selection // not recorded /// 0045577 // regulation of B cell differentiation // inferred from electronic annotation /// 0045577 // regulation of B cell differentiation // not recorded /// 0045582 // positive regulation of T cell differentiation // not recorded /// 0045582 // positive regulation of T cell differentiation // inferred from electronic annotation /// 0045588 // positive regulation of gamma-delta T cell differentiation // inferred from electronic annotation /// 0045588 // positive regulation of gamma-delta T cell differentiation // not recorded /// 0046641 // positive regulation of alpha-beta T cell proliferation // inferred from electronic annotation /// 0046641 // positive regulation of alpha-beta T cell proliferation // not recorded /// 0048304 // positive regulation of isotype switching to IgG isotypes // inferred from electronic annotation /// 0048304 // positive regulation of isotype switching to IgG isotypes // not recorded /// 0050732 // negative regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050732 // negative regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050852 // T cell receptor signaling pathway // not recorded /// 0050852 // T cell receptor signaling pathway // inferred from sequence or structural similarity /// 0050852 // T cell receptor signaling pathway // inferred from electronic annotation /// 0050853 // B cell receptor signaling pathway // not recorded /// 0050853 // B cell receptor signaling pathway // inferred from sequence or structural similarity /// 0050853 // B cell receptor signaling pathway // inferred from electronic annotation /// 0050855 // regulation of B cell receptor signaling pathway // inferred from electronic annotation /// 0050855 // regulation of B cell receptor signaling pathway // not recorded /// 0050857 // positive regulation of antigen receptor-mediated signaling pathway // not recorded /// 0050857 // positive regulation of antigen receptor-mediated signaling pathway // inferred from sequence or structural similarity /// 0051209 // release of sequestered calcium ion into cytosol // not recorded /// 0051209 // release of sequestered calcium ion into cytosol // inferred from sequence or structural similarity /// 0051607 // defense response to virus // not recorded /// 0051607 // defense response to virus // inferred from sequence or structural similarity /// 0051726 // regulation of cell cycle // not recorded /// 0051726 // regulation of cell cycle // inferred from sequence or structural similarity 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // inferred from sequence or structural similarity /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009898 // internal side of plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // inferred from sequence or structural similarity /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005001 // transmembrane receptor protein tyrosine phosphatase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0019887 // protein kinase regulator activity // traceable author statement /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0043395 // heparan sulfate proteoglycan binding // inferred from electronic annotation /// 0043395 // heparan sulfate proteoglycan binding // not recorded 1370604_at U53144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U53144.1 /DB_XREF=gi:1395212 /GEN=rOb-R /FEA=FLmRNA /CNT=2 /TID=Rn.9891.2 /TIER=FL /STK=1 /UG=Rn.9891 /LL=24536 /DEF=Rattus norvegicus leptin receptor (rOb-R) mRNA, complete cds. /PROD=leptin receptor /FL=gb:U53144.1 U53144 leptin receptor Lepr 24536 NM_012596 0001525 // angiogenesis // inferred from mutant phenotype /// 0001542 // ovulation from ovarian follicle // inferred from expression pattern /// 0006091 // generation of precursor metabolites and energy // non-traceable author statement /// 0007565 // female pregnancy // inferred from expression pattern /// 0008203 // cholesterol metabolic process // not recorded /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0031669 // cellular response to nutrient levels // inferred from expression pattern /// 0033210 // leptin-mediated signaling pathway // inferred from direct assay /// 0035094 // response to nicotine // inferred from expression pattern /// 0042221 // response to chemical stimulus // inferred from expression pattern /// 0042755 // eating behavior // inferred from mutant phenotype /// 0043410 // positive regulation of MAPKKK cascade // inferred from direct assay /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0051346 // negative regulation of hydrolase activity // not recorded /// 0051346 // negative regulation of hydrolase activity // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016500 // protein-hormone receptor activity // inferred from direct assay /// 0016500 // protein-hormone receptor activity // inferred from mutant phenotype /// 0017046 // peptide hormone binding // inferred from direct assay /// 0017046 // peptide hormone binding // inferred from mutant phenotype 1370605_s_at U53144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U53144.1 /DB_XREF=gi:1395212 /GEN=rOb-R /FEA=FLmRNA /CNT=2 /TID=Rn.9891.2 /TIER=FL /STK=1 /UG=Rn.9891 /LL=24536 /DEF=Rattus norvegicus leptin receptor (rOb-R) mRNA, complete cds. /PROD=leptin receptor /FL=gb:U53144.1 U53144 leptin receptor Lepr 24536 NM_012596 0001525 // angiogenesis // inferred from mutant phenotype /// 0001542 // ovulation from ovarian follicle // inferred from expression pattern /// 0006091 // generation of precursor metabolites and energy // non-traceable author statement /// 0007565 // female pregnancy // inferred from expression pattern /// 0008203 // cholesterol metabolic process // not recorded /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0031669 // cellular response to nutrient levels // inferred from expression pattern /// 0033210 // leptin-mediated signaling pathway // inferred from direct assay /// 0035094 // response to nicotine // inferred from expression pattern /// 0042221 // response to chemical stimulus // inferred from expression pattern /// 0042755 // eating behavior // inferred from mutant phenotype /// 0043410 // positive regulation of MAPKKK cascade // inferred from direct assay /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0051346 // negative regulation of hydrolase activity // not recorded /// 0051346 // negative regulation of hydrolase activity // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016500 // protein-hormone receptor activity // inferred from direct assay /// 0016500 // protein-hormone receptor activity // inferred from mutant phenotype /// 0017046 // peptide hormone binding // inferred from direct assay /// 0017046 // peptide hormone binding // inferred from mutant phenotype 1370606_at U22830 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U22830.1 /DB_XREF=gi:767872 /FEA=FLmRNA /CNT=2 /TID=Rn.10217.1 /TIER=FL /STK=1 /UG=Rn.10217 /LL=25265 /UG_GENE=P2ry1 /DEF=Rattus norvegicus P2Y purinoceptor mRNA, complete cds. /PROD=P2Y purinoceptor /FL=gb:U22830.1 U22830 purinergic receptor P2Y, G-protein coupled, 1 P2ry1 25265 NM_012800 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0007420 // brain development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from mutant phenotype /// 0010469 // regulation of receptor activity // inferred from direct assay /// 0010700 // negative regulation of norepinephrine secretion // inferred from direct assay /// 0019233 // sensory perception of pain // inferred from direct assay /// 0032962 // positive regulation of inositol trisphosphate biosynthetic process // inferred from direct assay /// 0042060 // wound healing // inferred from expression pattern /// 0042312 // regulation of vasodilation // inferred from mutant phenotype /// 0042755 // eating behavior // inferred from mutant phenotype /// 0043270 // positive regulation of ion transport // inferred from electronic annotation /// 0043270 // positive regulation of ion transport // not recorded /// 0046887 // positive regulation of hormone secretion // inferred from direct assay /// 0051100 // negative regulation of binding // inferred from direct assay /// 0060406 // positive regulation of penile erection // inferred from direct assay /// 0070848 // response to growth factor stimulus // inferred from expression pattern 0005739 // mitochondrion // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0044297 // cell body // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0031686 // A1 adenosine receptor binding // inferred from physical interaction /// 0043531 // ADP binding // inferred from direct assay /// 0045028 // purinergic nucleotide receptor activity, G-protein coupled // inferred from direct assay /// 0045028 // purinergic nucleotide receptor activity, G-protein coupled // traceable author statement /// 0045028 // purinergic nucleotide receptor activity, G-protein coupled // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1370607_a_at U02323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U02323.1 /DB_XREF=gi:408396 /FEA=FLmRNA /CNT=2 /TID=Rn.37438.2 /TIER=FL /STK=1 /UG=Rn.37438 /LL=112400 /UG_GENE=Nrg1 /DEF=Rattus norvegicus clone ndf42b neu differentiation factor mRNA, complete cds. /PROD=neu differentiation factor /FL=gb:U02319.1 gb:U02323.1 U02323 neuregulin 1 Nrg1 112400 NM_031588 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000165 // MAPKKK cascade // not recorded /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007171 // activation of transmembrane receptor protein tyrosine kinase activity // not recorded /// 0007219 // Notch signaling pathway // not recorded /// 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007416 // synapse assembly // inferred from electronic annotation /// 0007416 // synapse assembly // not recorded /// 0007422 // peripheral nervous system development // inferred from electronic annotation /// 0007422 // peripheral nervous system development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007517 // muscle organ development // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008217 // regulation of blood pressure // inferred from expression pattern /// 0008283 // cell proliferation // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0010001 // glial cell differentiation // inferred from electronic annotation /// 0010001 // glial cell differentiation // not recorded /// 0010667 // negative regulation of cardiac muscle cell apoptosis // not recorded /// 0015758 // glucose transport // inferred from mutant phenotype /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030307 // positive regulation of cell growth // not recorded /// 0042060 // wound healing // not recorded /// 0042552 // myelination // inferred from expression pattern /// 0043497 // regulation of protein heterodimerization activity // not recorded /// 0043624 // cellular protein complex disassembly // not recorded /// 0045213 // neurotransmitter receptor metabolic process // inferred from electronic annotation /// 0045213 // neurotransmitter receptor metabolic process // not recorded /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // not recorded /// 0045785 // positive regulation of cell adhesion // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0051048 // negative regulation of secretion // not recorded /// 0051155 // positive regulation of striated muscle cell differentiation // not recorded /// 0055007 // cardiac muscle cell differentiation // not recorded /// 0055012 // ventricular cardiac muscle cell differentiation // not recorded /// 0060045 // positive regulation of cardiac muscle cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0003712 // transcription cofactor activity // not recorded /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005176 // ErbB-2 class receptor binding // inferred from electronic annotation /// 0005176 // ErbB-2 class receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0030296 // protein tyrosine kinase activator activity // not recorded /// 0043125 // ErbB-3 class receptor binding // inferred from mutant phenotype /// 0043125 // ErbB-3 class receptor binding // not recorded 1370608_at AF058787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF058787.1 /DB_XREF=gi:3063688 /GEN=HO-3 /FEA=FLmRNA /CNT=2 /TID=Rn.14538.1 /TIER=FL /STK=1 /UG=Rn.14538 /DEF=Rattus norvegicus heme oxygenase-3 (HO-3) mRNA, complete cds. /PROD=heme oxygenase-3 /FL=gb:AF058787.1 AF058787 heme oxygenase (decycling) 3 Hmox3 365909 NM_001077436 0006788 // heme oxidation // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation 0004392 // heme oxygenase (decyclizing) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370609_a_at X97445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X97445.1 /DB_XREF=gi:1486417 /FEA=mRNA /CNT=2 /TID=Rn.10524.2 /TIER=ConsEnd /STK=0 /UG=Rn.10524 /LL=29735 /UG_GENE=Slc16a7 /DEF=R.norvegicus mRNA for monocarboxylate transporter MCT2. /PROD=monocarboxylate transporter MCT2 X97445 solute carrier family 16, member 7 (monocarboxylic acid transporter 2) Slc16a7 29735 NM_017302 0006810 // transport // inferred from electronic annotation /// 0015711 // organic anion transport // inferred from electronic annotation /// 0015718 // monocarboxylic acid transport // traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008028 // monocarboxylic acid transmembrane transporter activity // traceable author statement /// 0015293 // symporter activity // inferred from electronic annotation /// 0015355 // secondary active monocarboxylate transmembrane transporter activity // inferred from electronic annotation 1370610_at AB013453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB013453.1 /DB_XREF=gi:3868785 /GEN=NaPi-2 /FEA=FLmRNA /CNT=2 /TID=Rn.56092.1 /TIER=FL /STK=1 /UG=Rn.56092 /DEF=Rattus norvegicus mRNA for NaPi-2 alpha, complete cds. /PROD=NaPi-2 alpha /FL=gb:AB013453.1 AB013453 solute carrier family 34 (sodium phosphate), member 1 Slc34a1 25548 NM_013030 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006817 // phosphate transport // inferred from electronic annotation /// 0006817 // phosphate transport // inferred from mutant phenotype /// 0006817 // phosphate transport // not recorded /// 0010288 // response to lead ion // inferred from electronic annotation /// 0010288 // response to lead ion // not recorded /// 0032026 // response to magnesium ion // inferred from expression pattern /// 0046686 // response to cadmium ion // inferred from electronic annotation /// 0046686 // response to cadmium ion // not recorded /// 0046689 // response to mercury ion // inferred from electronic annotation /// 0046689 // response to mercury ion // not recorded /// 0046849 // bone remodeling // inferred from electronic annotation /// 0046849 // bone remodeling // not recorded /// 0055062 // phosphate ion homeostasis // inferred from electronic annotation /// 0055062 // phosphate ion homeostasis // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from direct assay 0005515 // protein binding // not recorded /// 0015293 // symporter activity // inferred from electronic annotation /// 0015321 // sodium-dependent phosphate transmembrane transporter activity // inferred from electronic annotation /// 0015321 // sodium-dependent phosphate transmembrane transporter activity // inferred from mutant phenotype /// 0015321 // sodium-dependent phosphate transmembrane transporter activity // not recorded 1370611_at U61405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U61405.1 /DB_XREF=gi:1408267 /GEN=ARNT2 /FEA=FLmRNA /CNT=2 /TID=Rn.10518.1 /TIER=FL /STK=1 /UG=Rn.10518 /LL=25243 /DEF=Rattus norvegicus aryl hydrocarbon receptor nuclear translocator 2 (ARNT2) mRNA, complete cds. /PROD=aryl hydrocarbon receptor nuclear translocator2 /FL=gb:U61405.1 U61405 aryl hydrocarbon receptor nuclear translocator 2 Arnt2 25243 NM_012781 0001666 // response to hypoxia // inferred from expression pattern /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0042221 // response to chemical stimulus // traceable author statement /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0017162 // aryl hydrocarbon receptor binding // inferred from electronic annotation /// 0017162 // aryl hydrocarbon receptor binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 1370612_at M74449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M74449.1 /DB_XREF=gi:206548 /GEN=RAK /FEA=FLmRNA /CNT=2 /TID=Rn.10298.1 /TIER=FL /STK=1 /UG=Rn.10298 /LL=25468 /DEF=Rat cardiac delayed rectifier potassium channel protein (RAK) mRNA, complete cds. /PROD=cardiac delayed rectifier potassium channelprotein /FL=gb:J04731.1 gb:M74449.1 M74449 potassium voltage-gated channel, shaker-related subfamily, member 2 Kcna2 25468 NM_012970 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0051259 // protein oligomerization // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from mutant phenotype /// 0008076 // voltage-gated potassium channel complex // not recorded /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0044224 // juxtaparanode region of axon // inferred from direct assay /// 0044224 // juxtaparanode region of axon // not recorded /// 0044224 // juxtaparanode region of axon // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0015271 // outward rectifier potassium channel activity // inferred from mutant phenotype 1370613_s_at AF461738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF461738.1 /DB_XREF=gi:18308175 /FEA=FLmRNA /CNT=1 /TID=Rn.26489.4 /TIER=FL /STK=1 /UG=Rn.26489 /LL=113992 /UG_GENE=Ugt1a6 /DEF=Rattus norvegicus UDP-glucuronosyltransferase 1A7 mRNA, complete cds. /PROD=UDP-glucuronosyltransferase 1A7 /FL=gb:AF461738.1 AF461738 UDP glucuronosyltransferase 1 family, polypeptide A1 /// UDP glucuronosyltransferase 1 family, polypeptide A2 /// UDP glycosyltransferase 1 family, polypeptide A3 /// UDP glucuronosyltransferase 1 family, polypeptide A5 /// UDP glucuronosyltransferase 1 family, polypeptide A6 /// UDP glucuronosyltransferase 1 family, polypeptide A7C /// UDP glycosyltransferase 1 family, polypeptide A8 /// UDP glucuronosyltransferase 1 family, polypeptide A9 Ugt1a1 /// Ugt1a2 /// Ugt1a3 /// Ugt1a5 /// Ugt1a6 /// Ugt1a7c /// Ugt1a8 /// Ugt1a9 113992 /// 154516 /// 24861 /// 301595 /// 396527 /// 396551 /// 396552 /// 574523 NM_001039549 /// NM_001039691 /// NM_012683 /// NM_057105 /// NM_130407 /// NM_175846 /// NM_201423 /// NM_201424 /// NM_201425 0001889 // liver development // inferred from expression pattern /// 0006711 // estrogen catabolic process // inferred from direct assay /// 0006789 // bilirubin conjugation // traceable author statement /// 0006805 // xenobiotic metabolic process // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0009812 // flavonoid metabolic process // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0010033 // response to organic substance // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0017144 // drug metabolic process // not recorded /// 0018411 // protein glucuronidation // traceable author statement /// 0018880 // 4-chlorobiphenyl metabolic process // inferred from direct assay /// 0019439 // aromatic compound catabolic process // inferred from direct assay /// 0019585 // glucuronate metabolic process // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042594 // response to starvation // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0045922 // negative regulation of fatty acid metabolic process // not recorded /// 0046226 // coumarin catabolic process // inferred from direct assay /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051552 // flavone metabolic process // not recorded /// 0070980 // biphenyl catabolic process // inferred from direct assay /// 0071361 // cellular response to ethanol // inferred from expression pattern /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern /// 0071385 // cellular response to glucocorticoid stimulus // inferred from direct assay /// 0071407 // cellular response to organic cyclic substance // inferred from expression pattern 0005624 // membrane fraction // inferred from direct assay /// 0005743 // mitochondrial inner membrane // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001972 // retinoic acid binding // not recorded /// 0004857 // enzyme inhibitor activity // not recorded /// 0005496 // steroid binding // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0015020 // glucuronosyltransferase activity // inferred from direct assay /// 0015020 // glucuronosyltransferase activity // inferred from electronic annotation /// 0015020 // glucuronosyltransferase activity // not recorded /// 0015020 // glucuronosyltransferase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1370614_s_at AF068261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF068261.1 /DB_XREF=gi:3219364 /FEA=FLmRNA /CNT=2 /TID=Rn.82713.1 /TIER=FL /STK=1 /UG=Rn.82713 /LL=171368 /UG_GENE=Stk39 /DEF=Rattus norvegicus pancreatic serine threonine kinase mRNA, complete cds. /PROD=pancreatic serine threonine kinase /FL=gb:AF068261.1 AF068261 serine/threonine kinase 39, STE20/SPS1 homolog (yeast) Stk39 54348 NM_019362 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0043268 // positive regulation of potassium ion transport // inferred from mutant phenotype 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from direct assay /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1370615_at U27518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U27518.1 /DB_XREF=gi:1177817 /FEA=FLmRNA /CNT=2 /TID=Rn.11131.1 /TIER=FL /STK=1 /UG=Rn.11131 /DEF=Rattus norvegicus UDP-glucuronosyltransferase mRNA, complete cds. /PROD=UDP-glucuronosyltransferase /FL=gb:U27518.1 U27518 UDP glucuronosyltransferase 2 family, polypeptide B7 Ugt2b7 286989 NM_173323 0008152 // metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001972 // retinoic acid binding // not recorded /// 0015020 // glucuronosyltransferase activity // inferred from electronic annotation /// 0015020 // glucuronosyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1370616_at U02324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U02324.1 /DB_XREF=gi:408398 /FEA=FLmRNA /CNT=2 /TID=Rn.37438.5 /TIER=FL /STK=1 /UG=Rn.37438 /LL=112400 /UG_GENE=Nrg1 /DEF=Rattus norvegicus clone ndf44 neu differentiation factor mRNA, complete cds. /PROD=neu differentiation factor /FL=gb:U02324.1 U02324 neuregulin 1 Nrg1 112400 NM_031588 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000165 // MAPKKK cascade // not recorded /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007171 // activation of transmembrane receptor protein tyrosine kinase activity // not recorded /// 0007219 // Notch signaling pathway // not recorded /// 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007416 // synapse assembly // inferred from electronic annotation /// 0007416 // synapse assembly // not recorded /// 0007422 // peripheral nervous system development // inferred from electronic annotation /// 0007422 // peripheral nervous system development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007517 // muscle organ development // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008217 // regulation of blood pressure // inferred from expression pattern /// 0008283 // cell proliferation // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0010001 // glial cell differentiation // inferred from electronic annotation /// 0010001 // glial cell differentiation // not recorded /// 0010667 // negative regulation of cardiac muscle cell apoptosis // not recorded /// 0015758 // glucose transport // inferred from mutant phenotype /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030307 // positive regulation of cell growth // not recorded /// 0042060 // wound healing // not recorded /// 0042552 // myelination // inferred from expression pattern /// 0043497 // regulation of protein heterodimerization activity // not recorded /// 0043624 // cellular protein complex disassembly // not recorded /// 0045213 // neurotransmitter receptor metabolic process // inferred from electronic annotation /// 0045213 // neurotransmitter receptor metabolic process // not recorded /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // not recorded /// 0045785 // positive regulation of cell adhesion // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0051048 // negative regulation of secretion // not recorded /// 0051155 // positive regulation of striated muscle cell differentiation // not recorded /// 0055007 // cardiac muscle cell differentiation // not recorded /// 0055012 // ventricular cardiac muscle cell differentiation // not recorded /// 0060045 // positive regulation of cardiac muscle cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0003712 // transcription cofactor activity // not recorded /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005176 // ErbB-2 class receptor binding // inferred from electronic annotation /// 0005176 // ErbB-2 class receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0030296 // protein tyrosine kinase activator activity // not recorded /// 0043125 // ErbB-3 class receptor binding // inferred from mutant phenotype /// 0043125 // ErbB-3 class receptor binding // not recorded 1370617_at D49847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D49847.1 /DB_XREF=gi:914960 /FEA=FLmRNA /CNT=2 /TID=Rn.37468.1 /TIER=FL /STK=1 /UG=Rn.37468 /DEF=Rat mRNA for Ash-s, complete cds. /PROD=Ash-s /FL=gb:D49847.1 D49847 growth factor receptor bound protein 2 Grb2 81504 NM_030846 0007165 // signal transduction // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0007265 // Ras protein signal transduction // traceable author statement /// 0007568 // aging // inferred from physical interaction /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0031623 // receptor internalization // inferred from electronic annotation /// 0031623 // receptor internalization // not recorded /// 0043408 // regulation of MAPKKK cascade // inferred from electronic annotation /// 0043408 // regulation of MAPKKK cascade // not recorded /// 0048646 // anatomical structure formation involved in morphogenesis // inferred from electronic annotation /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0060670 // branching involved in embryonic placenta morphogenesis // inferred from electronic annotation /// 0060670 // branching involved in embryonic placenta morphogenesis // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0012506 // vesicle membrane // inferred from electronic annotation /// 0012506 // vesicle membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0043234 // protein complex // inferred from direct assay 0001784 // phosphotyrosine binding // inferred from physical interaction /// 0005070 // SH3/SH2 adaptor activity // inferred from electronic annotation /// 0005070 // SH3/SH2 adaptor activity // not recorded /// 0005154 // epidermal growth factor receptor binding // not recorded /// 0005154 // epidermal growth factor receptor binding // inferred from sequence or structural similarity /// 0005154 // epidermal growth factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0019904 // protein domain specific binding // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0043560 // insulin receptor substrate binding // inferred from physical interaction /// 0043560 // insulin receptor substrate binding // not recorded /// 0043560 // insulin receptor substrate binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // inferred from physical interaction 1370618_at AB069907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB069907.1 /DB_XREF=gi:18652918 /FEA=FLmRNA /CNT=2 /TID=Rn.69006.1 /TIER=FL /STK=1 /UG=Rn.69006 /DEF=Rattus norvegicus mRNA for FIP-2 like protein, complete cds. /PROD=FIP-2 like protein /FL=gb:AB069907.1 AB069907 optineurin Optn 246294 NM_145081 0000042 // protein targeting to Golgi // inferred from electronic annotation /// 0000042 // protein targeting to Golgi // not recorded /// 0007030 // Golgi organization // inferred from mutant phenotype /// 0007030 // Golgi organization // not recorded /// 0007030 // Golgi organization // inferred from electronic annotation /// 0034613 // cellular protein localization // inferred from electronic annotation /// 0034613 // cellular protein localization // not recorded /// 0043001 // Golgi to plasma membrane protein transport // inferred from electronic annotation /// 0043001 // Golgi to plasma membrane protein transport // not recorded /// 0090161 // Golgi ribbon formation // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from sequence or structural similarity /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded 1370619_at AF432871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF432871.1 /DB_XREF=gi:16903083 /GEN=MDC /FEA=FLmRNA /CNT=2 /TID=Rn.48727.1 /TIER=FL /STK=1 /UG=Rn.48727 /LL=117551 /DEF=Rattus norvegicus LEW macrophage-derived chemokine CCL22 (MDC) mRNA, complete cds. /PROD=macrophage-derived chemokine CCL22 /FL=gb:AF432871.1 AF432871 chemokine (C-C motif) ligand 22 Ccl22 117551 NM_057203 0006955 // immune response // inferred from electronic annotation /// 0016477 // cell migration // inferred from expression pattern 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from direct assay /// 0008009 // chemokine activity // inferred from electronic annotation 1370620_at AF163477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF163477.1 /DB_XREF=gi:5911366 /FEA=FLmRNA /CNT=2 /TID=Rn.48727.1 /TIER=ConsEnd /STK=0 /UG=Rn.48727 /LL=117551 /UG_GENE=Scya22 /DEF=Rattus norvegicus macrophage-derived chemokine mRNA, partial cds. /PROD=macrophage-derived chemokine /FL=gb:AF432871.1 AF163477 chemokine (C-C motif) ligand 22 Ccl22 117551 NM_057203 0006955 // immune response // inferred from electronic annotation /// 0016477 // cell migration // inferred from expression pattern 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from direct assay /// 0008009 // chemokine activity // inferred from electronic annotation 1370621_at D13555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D13555.1 /DB_XREF=gi:467532 /FEA=FLmRNA /CNT=2 /TID=Rn.9997.1 /TIER=FL /STK=1 /UG=Rn.9997 /LL=25300 /UG_GENE=Cd3z /DEF=Rattus norvegicus mRNA for T cell receptor zeta chain, complete cds. /PROD=T cell receptor zeta chain /FL=gb:L08447.1 gb:D13555.1 D13555 Cd247 molecule Cd247 25300 NM_170789 0007166 // cell surface receptor linked signaling pathway // inferred from direct assay /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0042101 // T cell receptor complex // inferred from direct assay /// 0042101 // T cell receptor complex // not recorded /// 0042101 // T cell receptor complex // inferred from electronic annotation /// 0042105 // alpha-beta T cell receptor complex // inferred from electronic annotation /// 0042105 // alpha-beta T cell receptor complex // not recorded 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1370622_at U67863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U67863.1 /DB_XREF=gi:1565664 /FEA=FLmRNA /CNT=2 /TID=Rn.10620.1 /TIER=FL /STK=1 /UG=Rn.10620 /LL=25635 /UG_GENE=Mc4r /DEF=Rattus norvegicus melanocortin-4 receptor mRNA, complete cds. /PROD=melanocortin-4 receptor /FL=gb:U67863.1 U67863 melanocortin 4 receptor Mc4r 25635 NM_013099 0002024 // diet induced thermogenesis // inferred from direct assay /// 0006112 // energy reserve metabolic process // inferred from direct assay /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007631 // feeding behavior // inferred from direct assay /// 0007631 // feeding behavior // not recorded /// 0007631 // feeding behavior // inferred from electronic annotation /// 0019222 // regulation of metabolic process // inferred from electronic annotation /// 0019222 // regulation of metabolic process // not recorded /// 0030073 // insulin secretion // inferred from electronic annotation /// 0030073 // insulin secretion // not recorded /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // not recorded /// 0032868 // response to insulin stimulus // inferred from electronic annotation /// 0032868 // response to insulin stimulus // not recorded /// 0045780 // positive regulation of bone resorption // inferred from electronic annotation /// 0045780 // positive regulation of bone resorption // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004977 // melanocortin receptor activity // inferred from direct assay /// 0004977 // melanocortin receptor activity // inferred from mutant phenotype /// 0004977 // melanocortin receptor activity // not recorded /// 0004977 // melanocortin receptor activity // inferred from electronic annotation /// 0004980 // melanocyte-stimulating hormone receptor activity // inferred from electronic annotation /// 0004980 // melanocyte-stimulating hormone receptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017046 // peptide hormone binding // inferred from direct assay /// 0017046 // peptide hormone binding // inferred from mutant phenotype /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0042923 // neuropeptide binding // not recorded 1370623_at AF323608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF323608.2 /DB_XREF=gi:15243086 /FEA=FLmRNA /CNT=2 /TID=Rn.64635.1 /TIER=FL /STK=1 /UG=Rn.64635 /LL=84586 /UG_GENE=Fgl2 /DEF=Rattus norvegicus prothrombinase FGL2 mRNA, complete cds. /PROD=prothrombinase FGL2 /FL=gb:AF323608.2 AF323608 fibrinogen-like 2 Fgl2 84586 NM_053455 0007165 // signal transduction // inferred from electronic annotation /// 0007567 // parturition // traceable author statement 0005615 // extracellular space // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0008233 // peptidase activity // traceable author statement 1370624_at AF310076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF310076.1 /DB_XREF=gi:16588398 /FEA=FLmRNA /CNT=2 /TID=Rn.81080.1 /TIER=FL /STK=1 /UG=Rn.81080 /DEF=Rattus norvegicus protease activated receptor 3 mRNA, complete cds. /PROD=protease activated receptor 3 /FL=gb:AF310076.1 AF310076 coagulation factor II (thrombin) receptor-like 2 F2rl2 29636 NM_053313 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation /// 0009611 // response to wounding // inferred from expression pattern 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // not recorded /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0015057 // thrombin receptor activity // inferred from electronic annotation 1370625_at AF044201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF044201.1 /DB_XREF=gi:3426267 /FEA=FLmRNA /CNT=2 /TID=Rn.44942.1 /TIER=FL /STK=1 /UG=Rn.44942 /DEF=Rattus norvegicus neural membrane protein 35 mRNA, complete cds. /PROD=neural membrane protein 35 /FL=gb:AF044201.1 AF044201 Fas apoptotic inhibitory molecule 2 Faim2 246274 NM_144756 0006915 // apoptosis // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 1370626_at AF074880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF074880.1 /DB_XREF=gi:5381280 /FEA=FLmRNA /CNT=2 /TID=Rn.9905.1 /TIER=FL /STK=1 /UG=Rn.9905 /LL=25223 /UG_GENE=Tspy /DEF=Rattus norvegicus testis specific protein TSPY mRNA, complete cds. /PROD=testis specific protein TSPY /FL=gb:AF074880.1 AF074880 testis specific protein, Y-linked 1 Tspy1 25223 NM_022923 0006334 // nucleosome assembly // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007506 // gonadal mesoderm development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0042393 // histone binding // inferred from direct assay /// 0042802 // identical protein binding // not recorded 1370627_at AF097887 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF097887.1 /DB_XREF=gi:3806121 /FEA=FLmRNA /CNT=2 /TID=Rn.30047.1 /TIER=FL /STK=1 /UG=Rn.30047 /LL=171581 /UG_GENE=Chp /DEF=Rattus norvegicus Chp mRNA, complete cds. /PROD=Chp /FL=gb:AF097887.1 AF097887 ras homolog gene family, member V Rhov 171581 NM_138542 0007165 // signal transduction // inferred from direct assay /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370628_at M34097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M34097.1 /DB_XREF=gi:206689 /FEA=FLmRNA /CNT=2 /TID=Rn.9837.1 /TIER=FL /STK=1 /UG=Rn.9837 /UG_TITLE=Rat natural killer (NK) cell protease 1 (RNKP-1) mRNA, complete cds /DEF=Rat natural killer (NK) cell protease 1 (RNKP-1) mRNA, complete cds. /FL=gb:M34097.1 M34097 granzyme B Gzmb 171528 NM_138517 0006508 // proteolysis // inferred from electronic annotation /// 0010942 // positive regulation of cell death // inferred from mutant phenotype /// 0019835 // cytolysis // inferred from electronic annotation /// 0060555 // induction of necroptosis by extracellular signals // inferred from mutant phenotype 0005769 // early endosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1370629_at M85193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M85193.1 /DB_XREF=gi:206805 /GEN=RT6b /FEA=FLmRNA /CNT=2 /TID=Rn.9847.1 /TIER=FL /STK=1 /UG=Rn.9847 /DEF=R.norvegicus RT6.2 mRNA, complete cds. /PROD=RT6.2 /FL=gb:M85193.1 M85193 ADP-ribosyltransferase 2b Art2b 293152 NM_198735 0006471 // protein ADP-ribosylation // inferred from electronic annotation /// 0018120 // peptidyl-arginine ADP-ribosylation // inferred from electronic annotation /// 0018120 // peptidyl-arginine ADP-ribosylation // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from direct assay /// 0003956 // NAD(P)+-protein-arginine ADP-ribosyltransferase activity // inferred from electronic annotation /// 0003956 // NAD(P)+-protein-arginine ADP-ribosyltransferase activity // inferred from mutant phenotype /// 0003956 // NAD(P)+-protein-arginine ADP-ribosyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1370630_a_at L19104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L19104.1 /DB_XREF=gi:310134 /FEA=mRNA /CNT=3 /TID=Rn.12732.3 /TIER=ConsEnd /STK=0 /UG=Rn.12732 /LL=25022 /UG_GENE=Fgfr2 /DEF=Rat (clone R2(A3B)) heparin-binding fibroblast growth factor receptor 2 (extracellular domain) mRNA, partial cds. /PROD=heparin-binding fibroblast growth factorreceptor 2 L19104 fibroblast growth factor receptor 2 Fgfr2 25022 NM_001109892 /// NM_001109893 /// NM_001109894 /// NM_001109895 /// NM_001109896 /// NM_012712 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001837 // epithelial to mesenchymal transition // inferred from direct assay /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0003148 // outflow tract septum morphogenesis // not recorded /// 0003148 // outflow tract septum morphogenesis // inferred from electronic annotation /// 0003149 // membranous septum morphogenesis // not recorded /// 0003149 // membranous septum morphogenesis // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from mutant phenotype /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0008589 // regulation of smoothened signaling pathway // not recorded /// 0008589 // regulation of smoothened signaling pathway // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009880 // embryonic pattern specification // not recorded /// 0009880 // embryonic pattern specification // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010453 // regulation of cell fate commitment // not recorded /// 0010453 // regulation of cell fate commitment // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // not recorded /// 0016331 // morphogenesis of embryonic epithelium // inferred from electronic annotation /// 0022612 // gland morphogenesis // not recorded /// 0022612 // gland morphogenesis // inferred from electronic annotation /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0030177 // positive regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030282 // bone mineralization // not recorded /// 0030282 // bone mineralization // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030901 // midbrain development // not recorded /// 0030901 // midbrain development // inferred from electronic annotation /// 0030916 // otic vesicle formation // not recorded /// 0030916 // otic vesicle formation // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // not recorded /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0032808 // lacrimal gland development // not recorded /// 0032808 // lacrimal gland development // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035265 // organ growth // not recorded /// 0035265 // organ growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040036 // regulation of fibroblast growth factor receptor signaling pathway // not recorded /// 0040036 // regulation of fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042476 // odontogenesis // not recorded /// 0042476 // odontogenesis // inferred from electronic annotation /// 0045165 // cell fate commitment // not recorded /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0048286 // lung alveolus development // not recorded /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048333 // mesodermal cell differentiation // inferred from expression pattern /// 0048557 // embryonic digestive tract morphogenesis // not recorded /// 0048557 // embryonic digestive tract morphogenesis // inferred from electronic annotation /// 0048562 // embryonic organ morphogenesis // not recorded /// 0048562 // embryonic organ morphogenesis // inferred from electronic annotation /// 0048565 // digestive tract development // not recorded /// 0048565 // digestive tract development // inferred from electronic annotation /// 0048568 // embryonic organ development // not recorded /// 0048568 // embryonic organ development // inferred from electronic annotation /// 0048608 // reproductive structure development // not recorded /// 0048608 // reproductive structure development // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0048730 // epidermis morphogenesis // not recorded /// 0048730 // epidermis morphogenesis // inferred from electronic annotation /// 0048755 // branching morphogenesis of a nerve // not recorded /// 0048755 // branching morphogenesis of a nerve // inferred from electronic annotation /// 0048762 // mesenchymal cell differentiation // not recorded /// 0048762 // mesenchymal cell differentiation // inferred from electronic annotation /// 0050673 // epithelial cell proliferation // not recorded /// 0050673 // epithelial cell proliferation // inferred from electronic annotation /// 0050678 // regulation of epithelial cell proliferation // not recorded /// 0050678 // regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // inferred from direct assay /// 0051150 // regulation of smooth muscle cell differentiation // not recorded /// 0051150 // regulation of smooth muscle cell differentiation // inferred from electronic annotation /// 0051781 // positive regulation of cell division // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0060045 // positive regulation of cardiac muscle cell proliferation // not recorded /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060174 // limb bud formation // not recorded /// 0060174 // limb bud formation // inferred from electronic annotation /// 0060348 // bone development // not recorded /// 0060348 // bone development // inferred from electronic annotation /// 0060349 // bone morphogenesis // not recorded /// 0060349 // bone morphogenesis // inferred from electronic annotation /// 0060442 // branching involved in prostate gland morphogenesis // not recorded /// 0060442 // branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // not recorded /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060449 // bud elongation involved in lung branching // not recorded /// 0060449 // bud elongation involved in lung branching // inferred from electronic annotation /// 0060463 // lung lobe morphogenesis // not recorded /// 0060463 // lung lobe morphogenesis // inferred from electronic annotation /// 0060484 // lung-associated mesenchyme development // not recorded /// 0060484 // lung-associated mesenchyme development // inferred from electronic annotation /// 0060501 // positive regulation of epithelial cell proliferation involved in lung morphogenesis // not recorded /// 0060501 // positive regulation of epithelial cell proliferation involved in lung morphogenesis // inferred from electronic annotation /// 0060512 // prostate gland morphogenesis // not recorded /// 0060512 // prostate gland morphogenesis // inferred from electronic annotation /// 0060523 // prostate epithelial cord elongation // not recorded /// 0060523 // prostate epithelial cord elongation // inferred from electronic annotation /// 0060527 // prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis // not recorded /// 0060527 // prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis // inferred from electronic annotation /// 0060529 // squamous basal epithelial stem cell differentiation involved in prostate gland acinus development // not recorded /// 0060529 // squamous basal epithelial stem cell differentiation involved in prostate gland acinus development // inferred from electronic annotation /// 0060595 // fibroblast growth factor receptor signaling pathway involved in mammary gland specification // not recorded /// 0060595 // fibroblast growth factor receptor signaling pathway involved in mammary gland specification // inferred from electronic annotation /// 0060601 // lateral sprouting from an epithelium // not recorded /// 0060601 // lateral sprouting from an epithelium // inferred from electronic annotation /// 0060615 // mammary gland bud formation // not recorded /// 0060615 // mammary gland bud formation // inferred from electronic annotation /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // not recorded /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060667 // branch elongation involved in salivary gland morphogenesis // not recorded /// 0060667 // branch elongation involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060670 // branching involved in embryonic placenta morphogenesis // not recorded /// 0060670 // branching involved in embryonic placenta morphogenesis // inferred from electronic annotation /// 0060687 // regulation of branching involved in prostate gland morphogenesis // not recorded /// 0060687 // regulation of branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0060688 // regulation of morphogenesis of a branching structure // not recorded /// 0060688 // regulation of morphogenesis of a branching structure // inferred from electronic annotation /// 0060915 // mesenchymal cell differentiation involved in lung development // not recorded /// 0060915 // mesenchymal cell differentiation involved in lung development // inferred from electronic annotation /// 0060916 // mesenchymal cell proliferation involved in lung development // not recorded /// 0060916 // mesenchymal cell proliferation involved in lung development // inferred from electronic annotation /// 0070372 // regulation of ERK1 and ERK2 cascade // not recorded /// 0070372 // regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0071445 // cellular response to protein stimulus // not recorded /// 0071445 // cellular response to protein stimulus // inferred from electronic annotation /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0005938 // cell cortex // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005007 // fibroblast growth factor receptor activity // inferred from electronic annotation /// 0005007 // fibroblast growth factor receptor activity // inferred from physical interaction /// 0005007 // fibroblast growth factor receptor activity // not recorded /// 0005007 // fibroblast growth factor receptor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // inferred from physical interaction /// 0017134 // fibroblast growth factor binding // not recorded /// 0017134 // fibroblast growth factor binding // inferred from electronic annotation /// 0048602 // fibroblast growth factor 1 binding // inferred from physical interaction 1370631_at L20869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L20869.1 /DB_XREF=gi:463279 /GEN=PAPIII0 /FEA=FLmRNA /CNT=2 /TID=Rn.9729.1 /TIER=FL /STK=1 /UG=Rn.9729 /DEF=Rattus norvegicus pancreatitis associated protein III (PAPIII0) mRNA, complete cds. /PROD=pancreatitis associated protein III /FL=gb:L20869.1 L20869 regenerating islet-derived 3 gamma Reg3g 24620 NM_173097 0006953 // acute-phase response // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1370632_at M76734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M76734.1 /DB_XREF=gi:207550 /GEN=RY2G12 /FEA=FLmRNA /CNT=2 /TID=Rn.11371.1 /TIER=FL /STK=1 /UG=Rn.11371 /DEF=Rat odorant-binding protein (RY2G12) mRNA, complete cds. /PROD=odorant-binding protein /FL=gb:M76734.1 M76734 odorant binding protein 2B Obp2b 286933 NM_173148 0006810 // transport // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1370633_at D87927 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D87927.1 /DB_XREF=gi:9967140 /FEA=FLmRNA /CNT=1 /TID=Rn.10525.2 /TIER=FL /STK=1 /UG=Rn.10525 /LL=171551 /UG_GENE=Cinc2 /DEF=Rattus norvegicus mRNA for CINC-2 alpha, complete cds. /PROD=CINC-2 alpha /FL=gb:D87927.1 D87927 chemokine (C-X-C motif) ligand 3 Cxcl3 171551 NM_138522 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from mutant phenotype /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // inferred from direct assay /// 0030593 // neutrophil chemotaxis // not recorded /// 0030593 // neutrophil chemotaxis // non-traceable author statement /// 0030593 // neutrophil chemotaxis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008009 // chemokine activity // inferred from direct assay /// 0008009 // chemokine activity // not recorded /// 0008009 // chemokine activity // inferred from electronic annotation 1370634_x_at D87927 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D87927.1 /DB_XREF=gi:9967140 /FEA=FLmRNA /CNT=1 /TID=Rn.10525.2 /TIER=FL /STK=1 /UG=Rn.10525 /LL=171551 /UG_GENE=Cinc2 /DEF=Rattus norvegicus mRNA for CINC-2 alpha, complete cds. /PROD=CINC-2 alpha /FL=gb:D87927.1 D87927 chemokine (C-X-C motif) ligand 3 Cxcl3 171551 NM_138522 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from mutant phenotype /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // inferred from direct assay /// 0030593 // neutrophil chemotaxis // not recorded /// 0030593 // neutrophil chemotaxis // non-traceable author statement /// 0030593 // neutrophil chemotaxis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008009 // chemokine activity // inferred from direct assay /// 0008009 // chemokine activity // not recorded /// 0008009 // chemokine activity // inferred from electronic annotation 1370635_at AF329091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF329091.1 /DB_XREF=gi:13774327 /FEA=FLmRNA /CNT=2 /TID=Rn.67074.1 /TIER=FL /STK=1 /UG=Rn.67074 /LL=171412 /UG_GENE=LOC171412 /DEF=Rattus norvegicus E-3 epididymal fluid protein mRNA, complete cds. /PROD=E-3 epididymal fluid protein /FL=gb:AF329091.1 AF329091 defensin beta 22 Defb22 171412 NM_134391 0006952 // defense response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 1370636_at AF349115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF349115.1 /DB_XREF=gi:13560702 /GEN=Rtck1 /FEA=FLmRNA /CNT=2 /TID=Rn.67082.1 /TIER=FL /STK=1 /UG=Rn.67082 /DEF=Rattus norvegicus CXC chemokine RTCK1 (Rtck1) mRNA, complete cds. /PROD=CXC chemokine RTCK1 /FL=gb:AF349115.1 AF349115 pro-platelet basic protein (chemokine (C-X-C motif) ligand 7) Ppbp 246358 NM_153721 0006955 // immune response // inferred from electronic annotation /// 0030168 // platelet activation // traceable author statement /// 0030220 // platelet formation // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annotation 1370637_at M57682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M57682.1 /DB_XREF=gi:206573 /FEA=FLmRNA /CNT=1 /TID=Rn.30066.4 /TIER=FL /STK=1 /UG=Rn.30066 /LL=29716 /UG_GENE=Cacna1d /DEF=Rat brain calcium channel alpha-1 subunit mRNA, complete cds. /PROD=calcium channel alpha-1 subunit /FL=gb:M57682.1 M57682 calcium channel, voltage-dependent, L type, alpha 1D subunit Cacna1d 29716 NM_017298 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // not recorded /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007613 // memory // inferred from expression pattern /// 0019722 // calcium-mediated signaling // inferred from direct assay /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // not recorded 0005886 // plasma membrane // not recorded /// 0005891 // voltage-gated calcium channel complex // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // not recorded /// 0005891 // voltage-gated calcium channel complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from direct assay /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // not recorded /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008331 // high voltage-gated calcium channel activity // not recorded /// 0008331 // high voltage-gated calcium channel activity // inferred from electronic annotation 1370638_at AF069525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF069525.1 /DB_XREF=gi:3202045 /FEA=FLmRNA /CNT=1 /TID=Rn.52763.1 /TIER=FL /STK=1 /UG=Rn.52763 /LL=83682 /UG_GENE=Ank3 /DEF=Rattus norvegicus 190 kDa ankyrin isoform mRNA, complete cds. /PROD=190 kDa ankyrin isoform /FL=gb:AF069525.1 AF069525 ankyrin 3, epithelial Ank3 361833 NM_001033984 /// NM_031805 0007165 // signal transduction // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // non-traceable author statement /// 0045184 // establishment of protein localization // not recorded /// 0045184 // establishment of protein localization // inferred from electronic annotation /// 0050808 // synapse organization // not recorded /// 0050808 // synapse organization // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0045202 // synapse // inferred from electronic annotation 0005200 // structural constituent of cytoskeleton // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // non-traceable author statement 1370639_at U17837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U17837.1 /DB_XREF=gi:949995 /FEA=FLmRNA /CNT=1 /TID=Affx.1.39 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus sp. zinc finger protein RIZ mRNA, complete cds. /PROD=zinc finger protein RIZ /FL=gb:U17837.1 U17837 PR domain containing 2, with ZNF domain Prdm2 313678 NM_001077648 0006350 // transcription // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370640_a_at AF370009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF370009.1 /DB_XREF=gi:14718595 /FEA=FLmRNA /CNT=1 /TID=Rn.30066.5 /TIER=FL /STK=1 /UG=Rn.30066 /LL=29716 /UG_GENE=Cacna1d /DEF=Rattus norvegicus voltage-gated calcium channel pore forming subunit CaV1.3alpha1 mRNA, complete cds, alternatively spliced. /PROD=voltage-gated calcium channel pore formingsubunit CaV1.3alpha1 /FL=gb:AF370009.1 AF370009 calcium channel, voltage-dependent, L type, alpha 1D subunit Cacna1d 29716 NM_017298 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // not recorded /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007613 // memory // inferred from expression pattern /// 0019722 // calcium-mediated signaling // inferred from direct assay /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // not recorded 0005886 // plasma membrane // not recorded /// 0005891 // voltage-gated calcium channel complex // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // not recorded /// 0005891 // voltage-gated calcium channel complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from direct assay /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // not recorded /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008331 // high voltage-gated calcium channel activity // not recorded /// 0008331 // high voltage-gated calcium channel activity // inferred from electronic annotation 1370641_s_at AF290214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF290214.1 /DB_XREF=gi:11415019 /FEA=FLmRNA /CNT=1 /TID=Rn.23698.4 /TIER=FL /STK=1 /UG=Rn.23698 /LL=29717 /UG_GENE=Cacna1g /DEF=Rattus norvegicus calcium channel alpha-1-I subunit mRNA, complete cds. /PROD=calcium channel alpha-1-I subunit /FL=gb:AF290214.1 AF290214 calcium channel, voltage-dependent, T type, alpha 1I subunit Cacna1i 56827 NM_020084 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005891 // voltage-gated calcium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370642_s_at BM389426 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389426 /DB_XREF=gi:18189479 /DB_XREF=UI-R-CN1-cjk-o-13-0-UI.s1 /CLONE=UI-R-CN1-cjk-o-13-0-UI /FEA=EST /CNT=8 /TID=Rn.39277.1 /TIER=Stack /STK=8 /UG=Rn.39277 /UG_TITLE=ESTs BM389426 platelet derived growth factor receptor, beta polypeptide Pdgfrb 24629 NM_031525 0001701 // in utero embryonic development // not recorded /// 0001822 // kidney development // not recorded /// 0001894 // tissue homeostasis // not recorded /// 0006024 // glycosaminoglycan biosynthetic process // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006807 // nitrogen compound metabolic process // not recorded /// 0007165 // signal transduction // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0007243 // intracellular protein kinase cascade // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0009636 // response to toxin // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0030325 // adrenal gland development // not recorded /// 0030335 // positive regulation of cell migration // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032967 // positive regulation of collagen biosynthetic process // inferred from mutant phenotype /// 0033993 // response to lipid // inferred from expression pattern /// 0034405 // response to fluid shear stress // inferred from expression pattern /// 0042060 // wound healing // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // not recorded /// 0048008 // platelet-derived growth factor receptor signaling pathway // not recorded /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // not recorded /// 0048745 // smooth muscle tissue development // not recorded /// 0048839 // inner ear development // inferred from expression pattern /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0055093 // response to hyperoxia // inferred from expression pattern /// 0060326 // cell chemotaxis // not recorded 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005017 // platelet-derived growth factor receptor activity // inferred from direct assay /// 0005017 // platelet-derived growth factor receptor activity // traceable author statement /// 0005019 // platelet-derived growth factor beta-receptor activity // not recorded /// 0005021 // vascular endothelial growth factor receptor activity // inferred from electronic annotation /// 0005161 // platelet-derived growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction /// 0048407 // platelet-derived growth factor binding // inferred from electronic annotation /// 0048407 // platelet-derived growth factor binding // not recorded 1370643_a_at AF230644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF230644.1 /DB_XREF=gi:7767544 /GEN=Kalirin /FEA=FLmRNA /CNT=1 /TID=Rn.10709.3 /TIER=FL /STK=1 /UG=Rn.10709 /LL=84009 /DEF=Rattus norvegicus Kalirin-7c isoform (Kalirin) mRNA, complete cds, alternatively spliced. /PROD=Kalirin-7c isoform /FL=gb:AF230644.1 AF230644 kalirin, RhoGEF kinase Kalrn 84009 NM_032062 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007399 // nervous system development // inferred from direct assay /// 0007409 // axonogenesis // inferred from direct assay /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0016192 // vesicle-mediated transport // inferred from direct assay /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0050773 // regulation of dendrite development // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // traceable author statement /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370644_at AB032019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB032019.1 /DB_XREF=gi:9186903 /GEN=ECaC /FEA=FLmRNA /CNT=1 /TID=Rn.12948.2 /TIER=FL /STK=1 /UG=Rn.12948 /LL=116469 /DEF=Rattus norvegicus ECaC mRNA for epithelial calcium channel, complete cds. /PROD=epithelial calcium channel /FL=gb:AB032019.1 AB032019 transient receptor potential cation channel, subfamily V, member 5 Trpv5 116469 NM_053787 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // not recorded /// 0006816 // calcium ion transport // inferred from sequence or structural similarity /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0051262 // protein tetramerization // not recorded /// 0051262 // protein tetramerization // inferred from sequence or structural similarity /// 0051262 // protein tetramerization // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from direct assay /// 0005262 // calcium channel activity // not recorded /// 0005262 // calcium channel activity // inferred from sequence or structural similarity /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370645_at AF016181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF016181.1 /DB_XREF=gi:2367610 /GEN=Go-VN4 /FEA=FLmRNA /CNT=1 /TID=Rn.10809.1 /TIER=FL /STK=1 /UG=Rn.10809 /DEF=Rattus norvegicus putative pheromone receptor (Go-VN4) mRNA, complete cds. /PROD=putative pheromone receptor /FL=gb:AF016181.1 AF016181 vomeronasal 2 receptor, 18 Vom2r18 286984 NM_173318 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1370646_at AF308611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF308611.1 /DB_XREF=gi:17979836 /FEA=FLmRNA /CNT=1 /TID=Rn.81216.1 /TIER=FL /STK=1 /UG=Rn.81216 /DEF=Rattus norvegicus mammary cancer associated protein RMT-1 mRNA, complete cds. /PROD=mammary cancer associated protein RMT-1 /FL=gb:AF308611.1 AF308611 mammary cancer associated protein RMT-1 Rmt1 246306 NM_145088 1370647_at U76717 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U76717.1 /DB_XREF=gi:1667596 /GEN=PG10.2 /FEA=FLmRNA /CNT=1 /TID=Rn.10612.1 /TIER=FL /STK=1 /UG=Rn.10612 /UG_TITLE=Rattus norvegicus PG10.2 mRNA, complete cds /DEF=Rattus norvegicus PG10.2 mRNA, complete cds. /FL=gb:U76717.1 U76717 interphotoreceptor matrix proteoglycan 2 Impg2 245919 NM_139088 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005540 // hyaluronic acid binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // not recorded /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded 1370648_a_at U25281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U25281.1 /DB_XREF=gi:1185396 /GEN=CR16 /FEA=FLmRNA /CNT=1 /TID=Rn.11272.2 /TIER=FL /STK=1 /UG=Rn.11272 /DEF=Rattus norvegicus SH3 domain binding protein (CR16) mRNA, complete cds. /PROD=SH3 domain binding protein /FL=gb:U25281.1 U25281 WAS/WASL interacting protein family, member 3 Wipf3 259242 NM_147211 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from mutant phenotype 1370649_at M59967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M59967.1 /DB_XREF=gi:456682 /FEA=FLmRNA /CNT=1 /TID=Affx.1.43 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus B2 bradykinin receptor mRNA, complete cds. /PROD=B2 bradykinin receptor /FL=gb:M59967.1 M59967 bradykinin receptor B2 Bdkrb2 25245 NM_173100 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0009651 // response to salt stress // inferred from electronic annotation /// 0009651 // response to salt stress // not recorded /// 0019233 // sensory perception of pain // traceable author statement /// 0033137 // negative regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033137 // negative regulation of peptidyl-serine phosphorylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0050482 // arachidonic acid secretion // inferred from electronic annotation /// 0050482 // arachidonic acid secretion // not recorded 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0002020 // protease binding // inferred from electronic annotation /// 0002020 // protease binding // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004947 // bradykinin receptor activity // inferred from direct assay /// 0004947 // bradykinin receptor activity // not recorded /// 0004947 // bradykinin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0031702 // type 1 angiotensin receptor binding // inferred from electronic annotation /// 0031702 // type 1 angiotensin receptor binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1370650_s_at BF408558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408558 /DB_XREF=gi:11396533 /DB_XREF=UI-R-BJ2-brf-b-12-0-UI.s1 /CLONE=UI-R-BJ2-brf-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.54699.1 /TIER=ConsEnd /STK=2 /UG=Rn.54699 /UG_TITLE=ESTs BF408558 bradykinin receptor B2 Bdkrb2 25245 NM_173100 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0009651 // response to salt stress // inferred from electronic annotation /// 0009651 // response to salt stress // not recorded /// 0019233 // sensory perception of pain // traceable author statement /// 0033137 // negative regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033137 // negative regulation of peptidyl-serine phosphorylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0050482 // arachidonic acid secretion // inferred from electronic annotation /// 0050482 // arachidonic acid secretion // not recorded 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0002020 // protease binding // inferred from electronic annotation /// 0002020 // protease binding // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004947 // bradykinin receptor activity // inferred from direct assay /// 0004947 // bradykinin receptor activity // not recorded /// 0004947 // bradykinin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0031702 // type 1 angiotensin receptor binding // inferred from electronic annotation /// 0031702 // type 1 angiotensin receptor binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1370651_a_at AB011439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB011439.1 /DB_XREF=gi:5263146 /GEN=SHIP-2 /FEA=FLmRNA /CNT=1 /TID=Rn.42902.2 /TIER=FL /STK=1 /UG=Rn.42902 /LL=65038 /DEF=Rattus norvegicus mRNA for SHIP-2, complete cds. /PROD=SHIP-2 /FL=gb:AB011439.1 AB011439 inositol polyphosphate phosphatase-like 1 Inppl1 65038 NM_022944 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006897 // endocytosis // inferred from electronic annotation /// 0006897 // endocytosis // not recorded /// 0007015 // actin filament organization // inferred from electronic annotation /// 0007015 // actin filament organization // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0008156 // negative regulation of DNA replication // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // not recorded /// 0010642 // negative regulation of platelet-derived growth factor receptor signaling pathway // inferred from mutant phenotype /// 0010977 // negative regulation of neuron projection development // inferred from mutant phenotype /// 0032868 // response to insulin stimulus // inferred from electronic annotation /// 0032868 // response to insulin stimulus // not recorded /// 0032957 // inositol trisphosphate metabolic process // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0043407 // negative regulation of MAP kinase activity // inferred from mutant phenotype /// 0043569 // negative regulation of insulin-like growth factor receptor signaling pathway // inferred from mutant phenotype /// 0044255 // cellular lipid metabolic process // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // not recorded /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from direct assay /// 0030479 // actin cortical patch // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0004445 // inositol-polyphosphate 5-phosphatase activity // inferred from direct assay /// 0004445 // inositol-polyphosphate 5-phosphatase activity // traceable author statement /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0042169 // SH2 domain binding // inferred from electronic annotation /// 0042169 // SH2 domain binding // not recorded 1370652_at M55293 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M55293.1 /DB_XREF=gi:207477 /GEN=trkB /FEA=FLmRNA /CNT=1 /TID=Rn.11246.2 /TIER=FL /STK=1 /UG=Rn.11246 /LL=25054 /DEF=Rat neural receptor protein-tyrosine kinase (trkB) mRNA, complete cds. /PROD=neural receptor protein-tyrosine kinase /FL=gb:M55293.1 M55293 neurotrophic tyrosine kinase, receptor, type 2 Ntrk2 25054 NM_001163168 /// NM_001163169 /// NM_012731 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007190 // activation of adenylate cyclase activity // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007631 // feeding behavior // inferred from electronic annotation /// 0007631 // feeding behavior // not recorded /// 0014047 // glutamate secretion // inferred from electronic annotation /// 0014047 // glutamate secretion // not recorded /// 0019222 // regulation of metabolic process // inferred from electronic annotation /// 0019222 // regulation of metabolic process // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031547 // brain-derived neurotrophic factor receptor signaling pathway // inferred from mutant phenotype /// 0042490 // mechanoreceptor differentiation // inferred from electronic annotation /// 0042490 // mechanoreceptor differentiation // not recorded /// 0046548 // retinal rod cell development // inferred from electronic annotation /// 0046548 // retinal rod cell development // not recorded /// 0046777 // protein autophosphorylation // inferred from mutant phenotype /// 0046928 // regulation of neurotransmitter secretion // inferred from direct assay /// 0050773 // regulation of dendrite development // inferred from mutant phenotype /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype 0000139 // Golgi membrane // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from electronic annotation /// 0043195 // terminal button // not recorded /// 0043197 // dendritic spine // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay /// 0048786 // presynaptic active zone // inferred from direct assay /// 0060076 // excitatory synapse // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from mutant phenotype /// 0004872 // receptor activity // inferred from electronic annotation /// 0005030 // neurotrophin receptor activity // inferred from direct assay /// 0005030 // neurotrophin receptor activity // inferred from electronic annotation /// 0005030 // neurotrophin receptor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0048403 // brain-derived neurotrophic factor binding // inferred from direct assay /// 0048403 // brain-derived neurotrophic factor binding // inferred from mutant phenotype 1370653_at AF016184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF016184.1 /DB_XREF=gi:2367616 /GEN=Go-VN7 /FEA=FLmRNA /CNT=1 /TID=Rn.10812.1 /TIER=FL /STK=1 /UG=Rn.10812 /DEF=Rattus norvegicus putative pheromone receptor (Go-VN7) mRNA, complete cds. /PROD=putative pheromone receptor /FL=gb:AF016184.1 AF016184 vomeronasal 2 receptor, 31 Vom2r31 286985 NM_173319 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1370654_at L06434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L06434.1 /DB_XREF=gi:205672 /FEA=FLmRNA /CNT=1 /TID=Affx.1.44 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus sp. clone ntt4r neurotransmitter transporter mRNA, complete cds. /PROD=neurotransmitter transporter /FL=gb:L06434.1 L06434 solute carrier family 6 (neurotransmitter transporter), member 17 Slc6a17 613226 NM_001033079 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation 1370655_a_at AF156981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF156981.1 /DB_XREF=gi:6693833 /FEA=FLmRNA /CNT=1 /TID=Rn.48762.2 /TIER=FL /STK=1 /UG=Rn.48762 /LL=56029 /UG_GENE=SNIP /DEF=Rattus norvegicus SNIP-a mRNA, complete cds. /PROD=SNIP-a /FL=gb:AF156981.1 AF156981 SNAP25-interacting protein Snip 56029 NM_019378 0006887 // exocytosis // inferred from electronic annotation /// 0007162 // negative regulation of cell adhesion // not recorded /// 0030334 // regulation of cell migration // not recorded /// 0030334 // regulation of cell migration // inferred from sequence or structural similarity /// 0034446 // substrate adhesion-dependent cell spreading // not recorded /// 0034446 // substrate adhesion-dependent cell spreading // inferred from sequence or structural similarity /// 0051046 // regulation of secretion // non-traceable author statement /// 0061001 // regulation of dendritic spine morphogenesis // not recorded /// 0061001 // regulation of dendritic spine morphogenesis // inferred from sequence or structural similarity /// 0061098 // positive regulation of protein tyrosine kinase activity // not recorded /// 0061098 // positive regulation of protein tyrosine kinase activity // inferred from sequence or structural similarity /// 0061099 // negative regulation of protein tyrosine kinase activity // not recorded /// 0061099 // negative regulation of protein tyrosine kinase activity // inferred from sequence or structural similarity 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0015629 // actin cytoskeleton // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from sequence or structural similarity 1370656_a_at AF093267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF093267.1 /DB_XREF=gi:3834624 /FEA=FLmRNA /CNT=1 /TID=Rn.37500.5 /TIER=FL /STK=1 /UG=Rn.37500 /LL=65137 /UG_GENE=Ruvbl1 /DEF=Rattus norvegicus homer-1b mRNA, complete cds. /PROD=homer-1b /FL=gb:AF093267.1 AF093267 homer homolog 1 (Drosophila) Homer1 29546 NM_031707 0003009 // skeletal muscle contraction // not recorded /// 0006950 // response to stress // inferred from expression pattern /// 0007216 // metabotropic glutamate receptor signaling pathway // inferred from direct assay /// 0007623 // circadian rhythm // inferred from expression pattern /// 0032236 // positive regulation of calcium ion transport via store-operated calcium channel activity // not recorded /// 0035094 // response to nicotine // inferred from expression pattern /// 0042220 // response to cocaine // inferred from expression pattern /// 0048741 // skeletal muscle fiber development // not recorded 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030018 // Z disc // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043034 // costamere // not recorded /// 0043198 // dendritic shaft // inferred from direct assay /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0060076 // excitatory synapse // inferred from direct assay 0005102 // receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0031802 // type 5 metabotropic glutamate receptor binding // inferred from physical interaction /// 0035256 // metabotropic glutamate receptor binding // inferred from physical interaction 1370657_at D25290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D25290.1 /DB_XREF=gi:435460 /GEN=KCAD /FEA=FLmRNA /CNT=1 /TID=Rn.10390.1 /TIER=FL /STK=1 /UG=Rn.10390 /LL=25409 /DEF=Rat mRNA for K-cadherin, complete cds. /PROD=K-cadherin /FL=gb:D25290.1 D25290 cadherin 6 Cdh6 25409 NM_012927 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0008585 // female gonad development // inferred from expression pattern /// 0016339 // calcium-dependent cell-cell adhesion // traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // traceable author statement 1370658_a_at AF031942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF031942.1 /DB_XREF=gi:2914750 /FEA=FLmRNA /CNT=1 /TID=Rn.10662.2 /TIER=FL /STK=1 /UG=Rn.10662 /DEF=Rattus norvegicus neural zinc finger factor 3 mRNA, complete cds. /PROD=neural zinc finger factor 3 /FL=gb:AF031942.1 AF031942 suppression of tumorigenicity 18 St18 266680 NM_153310 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation 1370659_at AF016179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF016179.1 /DB_XREF=gi:2367606 /GEN=Go-VN2 /FEA=FLmRNA /CNT=1 /TID=Rn.10807.1 /TIER=FL /STK=1 /UG=Rn.10807 /DEF=Rattus norvegicus putative pheromone receptor (Go-VN2) mRNA, complete cds. /PROD=putative pheromone receptor /FL=gb:AF016179.1 AF016179 vomeronasal 2 receptor, 32 Vom2r32 286981 NM_173315 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1370660_at AF016180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF016180.1 /DB_XREF=gi:2367608 /GEN=Go-VN3 /FEA=FLmRNA /CNT=1 /TID=Rn.10808.1 /TIER=FL /STK=1 /UG=Rn.10808 /DEF=Rattus norvegicus putative pheromone receptor (Go-VN3) mRNA, complete cds. /PROD=putative pheromone receptor /FL=gb:AF016180.1 AF016180 vomeronasal 2 receptor, 40 Vom2r40 286983 NM_173317 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1370661_a_at AF024622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF024622.1 /DB_XREF=gi:2833641 /GEN=GC-G /FEA=FLmRNA /CNT=1 /TID=Rn.10198.1 /TIER=FL /STK=1 /UG=Rn.10198 /DEF=Rattus norvegicus guanylyl cyclase-G (GC-G) mRNA, complete cds. /PROD=guanylyl cyclase-G /FL=gb:AF024622.1 AF024622 guanylate cyclase 2G Gucy2g 245708 NM_139042 0006182 // cGMP biosynthetic process // not recorded /// 0006182 // cGMP biosynthetic process // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // not recorded /// 0004383 // guanylate cyclase activity // traceable author statement /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008528 // peptide receptor activity, G-protein coupled // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation 1370662_a_at M34176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M34176.1 /DB_XREF=gi:203086 /FEA=FLmRNA /CNT=1 /TID=Rn.56138.2 /TIER=FL /STK=1 /UG=Rn.56138 /LL=140670 /UG_GENE=Ap2b1 /UG_TITLE=adaptor-related protein complex 2, beta 1 subunit /DEF=Rat beta adaptin mRNA, complete cds. /FL=gb:M34176.1 M34176 adaptor-related protein complex 2, beta 1 subunit Ap2b1 140670 NM_080583 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from mutant phenotype /// 0007269 // neurotransmitter secretion // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0048268 // clathrin coat assembly // inferred from direct assay /// 0048268 // clathrin coat assembly // inferred from mutant phenotype /// 0048488 // synaptic vesicle endocytosis // inferred from mutant phenotype /// 0050690 // regulation of defense response to virus by virus // not recorded 0005802 // trans-Golgi network // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030118 // clathrin coat // inferred from direct assay /// 0030119 // AP-type membrane coat adaptor complex // traceable author statement /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0030276 // clathrin binding // inferred from direct assay /// 0030276 // clathrin binding // not recorded /// 0032403 // protein complex binding // inferred from mutant phenotype /// 0032403 // protein complex binding // inferred from physical interaction 1370663_at D31838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D31838.1 /DB_XREF=gi:500609 /GEN=wee1 /FEA=FLmRNA /CNT=1 /TID=Affx.1.46 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rat mRNA for wee1 tyrosine kinase, complete cds. /PROD=wee1 tyrosine kinase /FL=gb:D31838.1 D31838 wee 1 homolog (S. pombe) Wee1 308937 NM_001012742 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370664_a_at AF016185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF016185.1 /DB_XREF=gi:2367618 /GEN=Go-VN13C /FEA=FLmRNA /CNT=1 /TID=Rn.10813.1 /TIER=FL /STK=1 /UG=Rn.10813 /DEF=Rattus norvegicus putative pheromone receptor (Go-VN13C) mRNA, complete cds. /PROD=putative pheromone receptor /FL=gb:AF016185.1 AF016185 putative pheromone receptor (Go-VN13B) /// vomeronasal 2 receptor, 75 LOC286980 /// Vom2r75 286980 /// 286986 NM_173320 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1370665_at U41853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U41853.1 /DB_XREF=gi:1480452 /GEN=ORP150 /FEA=FLmRNA /CNT=1 /TID=Rn.10542.1 /TIER=FL /STK=1 /UG=Rn.10542 /DEF=Rattus norvegicus 150 kDa oxygen regulated protein (ORP150) mRNA, complete cds. /PROD=150 kDa oxygen regulated protein /FL=gb:U41853.1 U41853 hypoxia up-regulated 1 Hyou1 192235 NM_001034028 /// NM_138867 0001666 // response to hypoxia // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1370666_at AF201839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF201839.1 /DB_XREF=gi:6409114 /FEA=FLmRNA /CNT=1 /TID=Rn.11191.1 /TIER=FL /STK=1 /UG=Rn.11191 /LL=171574 /UG_GENE=LOC171574 /DEF=Rattus norvegicus dynamin IIIbb isoform mRNA, complete cds. /PROD=dynamin IIIbb isoform /FL=gb:AF201839.1 AF201839 dynamin 3 Dnm3 171574 NM_138538 0006897 // endocytosis // inferred from mutant phenotype /// 0006897 // endocytosis // inferred from electronic annotation /// 0007416 // synapse assembly // inferred from direct assay /// 0042713 // sperm ejaculation // non-traceable author statement /// 0046847 // filopodium assembly // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // non-traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from mutant phenotype /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1370667_at M85301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M85301.1 /DB_XREF=gi:205708 /GEN=NHE-4 /FEA=FLmRNA /CNT=1 /TID=Rn.9707.1 /TIER=FL /STK=1 /UG=Rn.9707 /DEF=Rat sodium-hydrogen exchange protein-isoform 4 (NHE-4) mRNA, complete cds. /PROD=sodium-hydrogen exchange protein-isoform 4 /FL=gb:M85301.1 M85301 solute carrier family 9 (sodium/hydrogen exchanger), member 4 Slc9a4 24785 NM_173098 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006885 // regulation of pH // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation 0015297 // antiporter activity // inferred from electronic annotation /// 0015299 // solute:hydrogen antiporter activity // inferred from electronic annotation /// 0015385 // sodium:hydrogen antiporter activity // inferred from electronic annotation 1370668_a_at AF102853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF102853.1 /DB_XREF=gi:4151804 /FEA=FLmRNA /CNT=1 /TID=Rn.42893.2 /TIER=FL /STK=1 /UG=Rn.42893 /LL=59322 /UG_GENE=LOC59322 /DEF=Rattus norvegicus membrane-associated guanylate kinase-interacting protein 1 Maguin-1 mRNA, complete cds. /PROD=membrane-associated guanylate kinase-interactingprotein 1 Maguin-1 /FL=gb:AF102853.1 AF102853 connector enhancer of kinase suppressor of Ras 2 Cnksr2 59322 NM_001113366 /// NM_021686 0009966 // regulation of signal transduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0045211 // postsynaptic membrane // traceable author statement 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement 1370669_a_at AB027156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB027156.1 /DB_XREF=gi:6683034 /GEN=PDE10A /FEA=FLmRNA /CNT=1 /TID=Rn.44869.2 /TIER=FL /STK=1 /UG=Rn.44869 /LL=63885 /DEF=Rattus norvegicus mRNA for PDE10A3, complete cds. /PROD=PDE10A3 /FL=gb:AB027156.1 AB027156 phosphodiesterase 10A Pde10a 63885 NM_022236 0006198 // cAMP catabolic process // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0046069 // cGMP catabolic process // inferred from direct assay 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004112 // cyclic-nucleotide phosphodiesterase activity // inferred from direct assay /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // not recorded /// 0008144 // drug binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030552 // cAMP binding // inferred from direct assay /// 0030552 // cAMP binding // inferred from electronic annotation /// 0030553 // cGMP binding // inferred from direct assay /// 0030553 // cGMP binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047555 // 3',5'-cyclic-GMP phosphodiesterase activity // inferred from electronic annotation 1370670_at AF072439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF072439.1 /DB_XREF=gi:3264772 /FEA=FLmRNA /CNT=1 /TID=Rn.29978.1 /TIER=FL /STK=1 /UG=Rn.29978 /LL=115768 /UG_GENE=Zfp37 /DEF=Rattus norvegicus zinc-finger protein-37 mRNA, complete cds. /PROD=zinc-finger protein-37 /FL=gb:AF072439.1 AF072439 zinc finger protein 37 Zfp37 115768 NM_058209 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from expression pattern /// 0030154 // cell differentiation // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370671_at U33847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U33847.1 /DB_XREF=gi:1166527 /FEA=FLmRNA /CNT=1 /TID=Rn.10198.2 /TIER=FL /STK=1 /UG=Rn.10198 /DEF=Rattus norvegicus ksGC mRNA, complete cds. /PROD=ksGC /FL=gb:U33847.1 U33847 guanylate cyclase 2G Gucy2g 245708 NM_139042 0006182 // cGMP biosynthetic process // not recorded /// 0006182 // cGMP biosynthetic process // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // not recorded /// 0004383 // guanylate cyclase activity // traceable author statement /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008528 // peptide receptor activity, G-protein coupled // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation 1370672_a_at D14076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D14076.1 /DB_XREF=gi:391871 /FEA=FLmRNA /CNT=1 /TID=Rn.11191.2 /TIER=FL /STK=1 /UG=Rn.11191 /LL=171574 /UG_GENE=LOC171574 /DEF=Rat mRNA for testicular dynamin, complete cds. /PROD=testicular dynamin /FL=gb:D14076.1 D14076 dynamin 3 Dnm3 171574 NM_138538 0006897 // endocytosis // inferred from mutant phenotype /// 0006897 // endocytosis // inferred from electronic annotation /// 0007416 // synapse assembly // inferred from direct assay /// 0042713 // sperm ejaculation // non-traceable author statement /// 0046847 // filopodium assembly // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // non-traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from mutant phenotype /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1370673_at U56732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U56732.1 /DB_XREF=gi:1389740 /GEN=KS1 /FEA=FLmRNA /CNT=1 /TID=Rn.11374.1 /TIER=FL /STK=1 /UG=Rn.11374 /DEF=Rattus norvegicus KRABzinc finger suppressor protein 1 (KS1) mRNA, complete cds. /PROD=KRABzinc finger suppressor protein 1 /FL=gb:U56732.1 U56732 zinc finger protein 382 Zfp382 246264 NM_144749 0001558 // regulation of cell growth // non-traceable author statement /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016481 // negative regulation of transcription // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation 1370674_at AF016178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF016178.1 /DB_XREF=gi:2367604 /GEN=Go-VN1 /FEA=FLmRNA /CNT=1 /TID=Rn.10806.1 /TIER=FL /STK=1 /UG=Rn.10806 /DEF=Rattus norvegicus putative pheromone receptor (Go-VN1) mRNA, complete cds. /PROD=putative pheromone receptor /FL=gb:AF016178.1 AF016178 vomeronasal 2 receptor, 53 Vom2r53 286915 NM_173131 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1370675_at AF158248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF158248.2 /DB_XREF=gi:15010529 /FEA=FLmRNA /CNT=1 /TID=Rn.3073.2 /TIER=FL /STK=1 /UG=Rn.3073 /LL=83810 /UG_GENE=VR1L1 /DEF=Rattus norvegicus vanilloid receptor splice variant mRNA, complete cds. /PROD=vanilloid receptor splice variant /FL=gb:AF158248.2 AF158248 transient receptor potential cation channel, subfamily V, member 1 Trpv1 83810 NM_031982 0001659 // temperature homeostasis // inferred from electronic annotation /// 0001659 // temperature homeostasis // not recorded /// 0001660 // fever // inferred from electronic annotation /// 0001660 // fever // not recorded /// 0001774 // microglial cell activation // inferred from mutant phenotype /// 0002024 // diet induced thermogenesis // inferred from electronic annotation /// 0002024 // diet induced thermogenesis // not recorded /// 0002790 // peptide secretion // inferred from electronic annotation /// 0002790 // peptide secretion // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0009268 // response to pH // inferred from direct assay /// 0009268 // response to pH // inferred from expression pattern /// 0009268 // response to pH // not recorded /// 0009268 // response to pH // inferred from electronic annotation /// 0009408 // response to heat // inferred from direct assay /// 0009408 // response to heat // not recorded /// 0009408 // response to heat // inferred from electronic annotation /// 0014047 // glutamate secretion // inferred from direct assay /// 0014832 // urinary bladder smooth muscle contraction // not recorded /// 0014832 // urinary bladder smooth muscle contraction // inferred from electronic annotation /// 0019233 // sensory perception of pain // not recorded /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0042221 // response to chemical stimulus // inferred from electronic annotation /// 0042221 // response to chemical stimulus // not recorded /// 0042637 // catagen // inferred from electronic annotation /// 0042637 // catagen // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from mutant phenotype /// 0048265 // response to pain // not recorded /// 0048265 // response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // not recorded /// 0050954 // sensory perception of mechanical stimulus // inferred from electronic annotation /// 0050954 // sensory perception of mechanical stimulus // not recorded /// 0050955 // thermoception // not recorded /// 0050968 // detection of chemical stimulus involved in sensory perception of pain // inferred from electronic annotation /// 0050968 // detection of chemical stimulus involved in sensory perception of pain // not recorded /// 0060083 // smooth muscle contraction involved in micturition // inferred from electronic annotation /// 0060083 // smooth muscle contraction involved in micturition // not recorded /// 0060454 // positive regulation of gastric acid secretion // inferred from mutant phenotype /// 0070588 // calcium ion transmembrane transport // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern /// 0071502 // cellular response to temperature stimulus // inferred from expression pattern /// 0090212 // negative regulation of establishment of blood-brain barrier // inferred from mutant phenotype 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0030425 // dendrite // inferred from direct assay /// 0043005 // neuron projection // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // not recorded /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // inferred from direct assay /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008324 // cation transmembrane transporter activity // inferred from direct assay /// 0017081 // chloride channel regulator activity // inferred from direct assay 1370676_at AF436847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF436847.1 /DB_XREF=gi:16551387 /FEA=FLmRNA /CNT=1 /TID=Rn.16599.1 /TIER=FL /STK=1 /UG=Rn.16599 /DEF=Rattus norvegicus complement factor H-related protein mRNA, complete cds. /PROD=complement factor H-related protein /FL=gb:AF436847.1 AF436847 similar to complement factor H-related protein RGD1564614 498241 NM_001134792 1370677_at U80076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U80076.1 /DB_XREF=gi:1724121 /FEA=FLmRNA /CNT=1 /TID=Rn.16006.1 /TIER=FL /STK=1 /UG=Rn.16006 /DEF=Rattus norvegicus RIN1 mRNA, complete cds. /PROD=RIN1 /FL=gb:U80076.1 U80076 Ras and Rab interactor 1 Rin1 207119 NM_139038 0006897 // endocytosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370678_s_at D00688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D00688.1 /DB_XREF=gi:220809 /FEA=FLmRNA /CNT=1 /TID=Affx.1.47 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rat monoamine oxidase A gene, complete cds. /PROD=monoamine oxidase /FL=gb:D00688.1 D00688 monoamine oxidase A Maoa 29253 NM_033653 0006584 // catecholamine metabolic process // inferred from electronic annotation /// 0042135 // neurotransmitter catabolic process // inferred from electronic annotation /// 0042420 // dopamine catabolic process // not recorded /// 0042424 // catecholamine catabolic process // non-traceable author statement /// 0042428 // serotonin metabolic process // inferred from direct assay /// 0042428 // serotonin metabolic process // inferred from mutant phenotype /// 0042443 // phenylethylamine metabolic process // inferred from direct assay /// 0042443 // phenylethylamine metabolic process // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005741 // mitochondrial outer membrane // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008131 // primary amine oxidase activity // inferred from direct assay /// 0008131 // primary amine oxidase activity // inferred from mutant phenotype /// 0008131 // primary amine oxidase activity // not recorded /// 0008131 // primary amine oxidase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from direct assay /// 0050660 // FAD or FADH2 binding // inferred from mutant phenotype /// 0051378 // serotonin binding // inferred from direct assay /// 0051378 // serotonin binding // inferred from mutant phenotype 1370679_at AF017251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF017251.1 /DB_XREF=gi:4102868 /GEN=PLDs /FEA=FLmRNA /CNT=1 /TID=Rn.11130.3 /TIER=FL /STK=1 /UG=Rn.11130 /LL=25096 /DEF=Rattus norvegicus phospholipase D (PLDs) mRNA, complete cds. /PROD=phospholipase D /FL=gb:AF017251.1 AF017251 phospholipase D1 Pld1 25096 NM_030992 0006654 // phosphatidic acid biosynthetic process // inferred from mutant phenotype /// 0007154 // cell communication // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from mutant phenotype /// 0009395 // phospholipid catabolic process // inferred from mutant phenotype /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0043434 // response to peptide hormone stimulus // inferred from mutant phenotype /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from direct assay /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0031985 // Golgi cisterna // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004630 // phospholipase D activity // inferred from direct assay /// 0004630 // phospholipase D activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation /// 0070290 // NAPE-specific phospholipase D activity // inferred from electronic annotation 1370680_at AF483620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF483620.1 /DB_XREF=gi:19526443 /GEN=Stau /FEA=FLmRNA /CNT=1 /TID=Rn.73714.2 /TIER=FL /STK=1 /UG=Rn.73714 /DEF=Rattus norvegicus RNA-binding protein staufen splice form A (Stau) mRNA, complete cds; alternatively spliced. /PROD=RNA-binding protein staufen splice form A /FL=gb:AF483620.1 AF483620 staufen, RNA binding protein, homolog 2 (Drosophila) Stau2 171500 NM_001007149 /// NM_001007150 /// NM_134466 0006810 // transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation 1370681_at AF076184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF076184.1 /DB_XREF=gi:3347954 /GEN=PACS-1 /FEA=FLmRNA /CNT=1 /TID=Rn.17883.2 /TIER=FL /STK=1 /UG=Rn.17883 /LL=171444 /DEF=Rattus norvegicus cytosolic sorting protein PACS-1b (PACS-1) mRNA, complete cds. /PROD=cytosolic sorting protein PACS-1b /FL=gb:AF076184.1 AF076184 phosphofurin acidic cluster sorting protein 1 Pacs1 171444 NM_134406 0000042 // protein targeting to Golgi // inferred from electronic annotation /// 0000042 // protein targeting to Golgi // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0030137 // COPI-coated vesicle // inferred from electronic annotation /// 0030137 // COPI-coated vesicle // not recorded 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1370682_at AF169636 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF169636.1 /DB_XREF=gi:5758930 /GEN=Pirb /FEA=FLmRNA /CNT=1 /TID=Rn.48719.2 /TIER=FL /STK=1 /UG=Rn.48719 /DEF=Rattus norvegicus paired Ig-like receptor-B (Pirb) mRNA, complete cds. /PROD=paired Ig-like receptor-B /FL=gb:AF169636.1 AF169636 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3-like Lilrb3l 361493 NM_001037357 1370683_at AF467250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF467250.1 /DB_XREF=gi:18652257 /FEA=FLmRNA /CNT=1 /TID=Rn.19019.1 /TIER=FL /STK=1 /UG=Rn.19019 /DEF=Rattus norvegicus tandem pore potassium channel mRNA, complete cds. /PROD=tandem pore potassium channel /FL=gb:AF467250.1 AF467250 potassium channel, subfamily K, member 15 Kcnk15 156873 NM_130813 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // not recorded /// 0005267 // potassium channel activity // inferred from electronic annotation 1370684_s_at U08214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U08214.1 /DB_XREF=gi:475515 /GEN=URE-B1 /FEA=FLmRNA /CNT=1 /TID=Affx.1.48 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus sp. DNA binding protein (URE-B1) mRNA, complete cds. /FL=gb:U08214.1 U08214 hypothetical protein LOC501546 LOC501546 501546 XR_005443 /// XR_009642 0000209 // protein polyubiquitination // inferred from sequence or structural similarity /// 0006464 // protein modification process // inferred from electronic annotation /// 0016574 // histone ubiquitination // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0005488 // binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1370685_at AB015231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB015231.3 /DB_XREF=gi:6070337 /FEA=FLmRNA /CNT=1 /TID=Rn.3073.3 /TIER=FL /STK=1 /UG=Rn.3073 /LL=83810 /UG_GENE=VR1L1 /DEF=Rattus norvegicus mRNA for stretch-inhibitable nonselective channel (SIC), complete cds. /PROD=stretch-inhibitable nonselective channel (SIC) /FL=gb:AB015231.3 AB015231 transient receptor potential cation channel, subfamily V, member 1 Trpv1 83810 NM_031982 0001659 // temperature homeostasis // inferred from electronic annotation /// 0001659 // temperature homeostasis // not recorded /// 0001660 // fever // inferred from electronic annotation /// 0001660 // fever // not recorded /// 0001774 // microglial cell activation // inferred from mutant phenotype /// 0002024 // diet induced thermogenesis // inferred from electronic annotation /// 0002024 // diet induced thermogenesis // not recorded /// 0002790 // peptide secretion // inferred from electronic annotation /// 0002790 // peptide secretion // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0009268 // response to pH // inferred from direct assay /// 0009268 // response to pH // inferred from expression pattern /// 0009268 // response to pH // not recorded /// 0009268 // response to pH // inferred from electronic annotation /// 0009408 // response to heat // inferred from direct assay /// 0009408 // response to heat // not recorded /// 0009408 // response to heat // inferred from electronic annotation /// 0014047 // glutamate secretion // inferred from direct assay /// 0014832 // urinary bladder smooth muscle contraction // not recorded /// 0014832 // urinary bladder smooth muscle contraction // inferred from electronic annotation /// 0019233 // sensory perception of pain // not recorded /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0042221 // response to chemical stimulus // inferred from electronic annotation /// 0042221 // response to chemical stimulus // not recorded /// 0042637 // catagen // inferred from electronic annotation /// 0042637 // catagen // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from mutant phenotype /// 0048265 // response to pain // not recorded /// 0048265 // response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // not recorded /// 0050954 // sensory perception of mechanical stimulus // inferred from electronic annotation /// 0050954 // sensory perception of mechanical stimulus // not recorded /// 0050955 // thermoception // not recorded /// 0050968 // detection of chemical stimulus involved in sensory perception of pain // inferred from electronic annotation /// 0050968 // detection of chemical stimulus involved in sensory perception of pain // not recorded /// 0060083 // smooth muscle contraction involved in micturition // inferred from electronic annotation /// 0060083 // smooth muscle contraction involved in micturition // not recorded /// 0060454 // positive regulation of gastric acid secretion // inferred from mutant phenotype /// 0070588 // calcium ion transmembrane transport // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern /// 0071502 // cellular response to temperature stimulus // inferred from expression pattern /// 0090212 // negative regulation of establishment of blood-brain barrier // inferred from mutant phenotype 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0030425 // dendrite // inferred from direct assay /// 0043005 // neuron projection // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // not recorded /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // inferred from direct assay /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008324 // cation transmembrane transporter activity // inferred from direct assay /// 0017081 // chloride channel regulator activity // inferred from direct assay 1370686_at U32575 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U32575.1 /DB_XREF=gi:1163173 /GEN=rsec6 /FEA=FLmRNA /CNT=1 /TID=Affx.1.49 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus (rsec6) mRNA, complete cds. /FL=gb:U32575.1 U32575 exocyst complex component 3 Exoc3 252881 NM_001024964 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 1370687_a_at M55292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M55292.1 /DB_XREF=gi:207475 /GEN=trkB /FEA=FLmRNA /CNT=1 /TID=Rn.11246.3 /TIER=FL /STK=1 /UG=Rn.11246 /LL=25054 /DEF=Rat neural receptor protein-tyrosine kinase (trkB) mRNA, complete cds. /PROD=neural receptor protein-tyrosine kinase /FL=gb:M55292.1 M55292 neurotrophic tyrosine kinase, receptor, type 2 Ntrk2 25054 NM_001163168 /// NM_001163169 /// NM_012731 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007190 // activation of adenylate cyclase activity // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007631 // feeding behavior // inferred from electronic annotation /// 0007631 // feeding behavior // not recorded /// 0014047 // glutamate secretion // inferred from electronic annotation /// 0014047 // glutamate secretion // not recorded /// 0019222 // regulation of metabolic process // inferred from electronic annotation /// 0019222 // regulation of metabolic process // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031547 // brain-derived neurotrophic factor receptor signaling pathway // inferred from mutant phenotype /// 0042490 // mechanoreceptor differentiation // inferred from electronic annotation /// 0042490 // mechanoreceptor differentiation // not recorded /// 0046548 // retinal rod cell development // inferred from electronic annotation /// 0046548 // retinal rod cell development // not recorded /// 0046777 // protein autophosphorylation // inferred from mutant phenotype /// 0046928 // regulation of neurotransmitter secretion // inferred from direct assay /// 0050773 // regulation of dendrite development // inferred from mutant phenotype /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype 0000139 // Golgi membrane // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from electronic annotation /// 0043195 // terminal button // not recorded /// 0043197 // dendritic spine // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay /// 0048786 // presynaptic active zone // inferred from direct assay /// 0060076 // excitatory synapse // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from mutant phenotype /// 0004872 // receptor activity // inferred from electronic annotation /// 0005030 // neurotrophin receptor activity // inferred from direct assay /// 0005030 // neurotrophin receptor activity // inferred from electronic annotation /// 0005030 // neurotrophin receptor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0048403 // brain-derived neurotrophic factor binding // inferred from direct assay /// 0048403 // brain-derived neurotrophic factor binding // inferred from mutant phenotype 1370688_at J05181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J05181.1 /DB_XREF=gi:204281 /FEA=FLmRNA /CNT=1 /TID=Rn.10934.1 /TIER=FL /STK=1 /UG=Rn.10934 /LL=25283 /UG_GENE=Gclc /UG_TITLE=Glutamylcysteine gamma synthetase light chain /DEF=Rat gamma-glutamylcysteine synthetase mRNA, complete cds. /FL=gb:J05181.1 J05181 glutamate-cysteine ligase, catalytic subunit Gclc 25283 NM_012815 0006534 // cysteine metabolic process // not recorded /// 0006534 // cysteine metabolic process // inferred from sequence or structural similarity /// 0006534 // cysteine metabolic process // inferred from electronic annotation /// 0006536 // glutamate metabolic process // not recorded /// 0006536 // glutamate metabolic process // inferred from sequence or structural similarity /// 0006536 // glutamate metabolic process // inferred from electronic annotation /// 0006749 // glutathione metabolic process // not recorded /// 0006749 // glutathione metabolic process // inferred from electronic annotation /// 0006750 // glutathione biosynthetic process // inferred from mutant phenotype /// 0006750 // glutathione biosynthetic process // not recorded /// 0006750 // glutathione biosynthetic process // inferred from sequence or structural similarity /// 0006750 // glutathione biosynthetic process // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from sequence or structural similarity /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from mutant phenotype /// 0006979 // response to oxidative stress // not recorded /// 0006979 // response to oxidative stress // inferred from sequence or structural similarity /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0009408 // response to heat // not recorded /// 0009408 // response to heat // inferred from sequence or structural similarity /// 0009408 // response to heat // inferred from electronic annotation /// 0009410 // response to xenobiotic stimulus // inferred from electronic annotation /// 0009410 // response to xenobiotic stimulus // not recorded /// 0009725 // response to hormone stimulus // not recorded /// 0009725 // response to hormone stimulus // inferred from sequence or structural similarity /// 0009725 // response to hormone stimulus // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0019852 // L-ascorbic acid metabolic process // inferred from electronic annotation /// 0019852 // L-ascorbic acid metabolic process // not recorded /// 0031397 // negative regulation of protein ubiquitination // inferred from electronic annotation /// 0031397 // negative regulation of protein ubiquitination // not recorded /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // inferred from mutant phenotype /// 0045454 // cell redox homeostasis // not recorded /// 0045454 // cell redox homeostasis // inferred from sequence or structural similarity /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0046685 // response to arsenic // inferred from electronic annotation /// 0046685 // response to arsenic // not recorded /// 0050880 // regulation of blood vessel size // not recorded /// 0050880 // regulation of blood vessel size // inferred from sequence or structural similarity /// 0050880 // regulation of blood vessel size // inferred from electronic annotation /// 0051409 // response to nitrosative stress // inferred from mutant phenotype /// 0051900 // regulation of mitochondrial depolarization // inferred from electronic annotation /// 0051900 // regulation of mitochondrial depolarization // not recorded 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0017109 // glutamate-cysteine ligase complex // inferred from direct assay /// 0017109 // glutamate-cysteine ligase complex // not recorded /// 0017109 // glutamate-cysteine ligase complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004357 // glutamate-cysteine ligase activity // inferred from mutant phenotype /// 0004357 // glutamate-cysteine ligase activity // not recorded /// 0004357 // glutamate-cysteine ligase activity // inferred from sequence or structural similarity /// 0004357 // glutamate-cysteine ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016595 // glutamate binding // not recorded /// 0016595 // glutamate binding // inferred from sequence or structural similarity /// 0016595 // glutamate binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0043531 // ADP binding // not recorded /// 0043531 // ADP binding // inferred from sequence or structural similarity /// 0043531 // ADP binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0050662 // coenzyme binding // not recorded /// 0050662 // coenzyme binding // inferred from sequence or structural similarity /// 0050662 // coenzyme binding // inferred from electronic annotation 1370689_at M82845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M82845.1 /DB_XREF=gi:205985 /GEN=PAM /FEA=FLmRNA /CNT=1 /TID=Rn.1121.3 /TIER=FL /STK=1 /UG=Rn.1121 /LL=25508 /DEF=Rattus norvegicus peptidylglycine alpha-amidating monooxygenase-5 (PAM) mRNA, complete cds. /PROD=peptidylglycine alpha-amidating monooxygenase-5 /FL=gb:M82845.1 M82845 peptidylglycine alpha-amidating monooxygenase Pam 25508 NM_013000 0001666 // response to hypoxia // inferred from expression pattern /// 0006518 // peptide metabolic process // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from expression pattern /// 0007507 // heart development // inferred from expression pattern /// 0007595 // lactation // inferred from expression pattern /// 0009268 // response to pH // inferred from direct assay /// 0009987 // cellular process // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from direct assay /// 0046688 // response to copper ion // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060173 // limb development // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005624 // membrane fraction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay /// 0030658 // transport vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043204 // perikaryon // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004504 // peptidylglycine monooxygenase activity // inferred from direct assay /// 0004504 // peptidylglycine monooxygenase activity // inferred from electronic annotation /// 0004598 // peptidylamidoglycolate lyase activity // inferred from direct assay /// 0004598 // peptidylamidoglycolate lyase activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from direct assay /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370690_at S75280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:S75280.1 /DB_XREF=gi:896231 /GEN=pre-mtHSP70 /FEA=FLmRNA /CNT=1 /TID=Affx.1.52 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus sp. pre-mtHSP70 mRNA, complete cds; nuclear gene for mitochondrial product. /PROD=pre-mtHSP70 /FL=gb:S75280.1 S75280 heat shock protein 9 Hspa9 291671 NM_001100658 0006457 // protein folding // inferred from electronic annotation /// 0006611 // protein export from nucleus // inferred from electronic annotation /// 0006611 // protein export from nucleus // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0051082 // unfolded protein binding // inferred from electronic annotation 1370691_a_at M18028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M18028.1 /DB_XREF=gi:207300 /FEA=FLmRNA /CNT=1 /TID=Rn.11307.2 /TIER=FL /STK=1 /UG=Rn.11307 /LL=81812 /UG_GENE=Thra1 /UG_TITLE=thyroid hormone receptor alpha /DEF=Rat thyroid hormone receptor mRNA, complete cds. /FL=gb:M18028.1 M18028 thyroid hormone receptor alpha Thra 81812 NM_001017960 /// NM_031134 0001502 // cartilage condensation // not recorded /// 0001502 // cartilage condensation // inferred from electronic annotation /// 0001503 // ossification // not recorded /// 0001503 // ossification // inferred from electronic annotation /// 0001822 // kidney development // inferred from expression pattern /// 0001889 // liver development // inferred from expression pattern /// 0002155 // regulation of thyroid hormone mediated signaling pathway // not recorded /// 0002155 // regulation of thyroid hormone mediated signaling pathway // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006950 // response to stress // inferred from expression pattern /// 0007165 // signal transduction // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0007611 // learning or memory // not recorded /// 0007611 // learning or memory // inferred from electronic annotation /// 0008016 // regulation of heart contraction // not recorded /// 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0008050 // female courtship behavior // not recorded /// 0008050 // female courtship behavior // inferred from electronic annotation /// 0009409 // response to cold // not recorded /// 0009409 // response to cold // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0009755 // hormone-mediated signaling pathway // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010831 // positive regulation of myotube differentiation // not recorded /// 0010831 // positive regulation of myotube differentiation // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0017055 // negative regulation of RNA polymerase II transcriptional preinitiation complex assembly // not recorded /// 0017055 // negative regulation of RNA polymerase II transcriptional preinitiation complex assembly // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // not recorded /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030324 // lung development // inferred from expression pattern /// 0030325 // adrenal gland development // inferred from expression pattern /// 0030878 // thyroid gland development // not recorded /// 0030878 // thyroid gland development // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0033032 // regulation of myeloid cell apoptosis // not recorded /// 0033032 // regulation of myeloid cell apoptosis // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042994 // cytoplasmic sequestering of transcription factor // not recorded /// 0042994 // cytoplasmic sequestering of transcription factor // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045925 // positive regulation of female receptivity // not recorded /// 0045925 // positive regulation of female receptivity // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048565 // digestive tract development // inferred from expression pattern /// 0048568 // embryonic organ development // inferred from expression pattern /// 0050994 // regulation of lipid catabolic process // not recorded /// 0050994 // regulation of lipid catabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0002153 // steroid receptor RNA activator RNA binding // not recorded /// 0002153 // steroid receptor RNA activator RNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0003727 // single-stranded RNA binding // inferred from direct assay /// 0003727 // single-stranded RNA binding // not recorded /// 0003727 // single-stranded RNA binding // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // not recorded /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0004887 // thyroid hormone receptor activity // inferred from direct assay /// 0004887 // thyroid hormone receptor activity // not recorded /// 0004887 // thyroid hormone receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016988 // transcription initiation factor antagonist activity // not recorded /// 0016988 // transcription initiation factor antagonist activity // inferred from electronic annotation /// 0017025 // TATA-binding protein binding // not recorded /// 0017025 // TATA-binding protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0044213 // intronic transcription regulatory region DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0070324 // thyroid hormone binding // not recorded /// 0070324 // thyroid hormone binding // inferred from electronic annotation 1370692_at U04317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U04317.1 /DB_XREF=gi:488275 /GEN=Fit-1 /FEA=FLmRNA /CNT=1 /TID=Rn.10072.2 /TIER=FL /STK=1 /UG=Rn.10072 /LL=25556 /DEF=Rattus norvegicus Fit-1M (Fit-1) mRNA, complete cds. /PROD=Fit-1M /FL=gb:U04317.1 U04317 interleukin 1 receptor-like 1 Il1rl1 25556 NM_001127689 /// NM_013037 0007165 // signal transduction // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0045087 // innate immune response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // inferred from mutant phenotype /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031224 // intrinsic to membrane // inferred from electronic annotation 0002113 // interleukin-33 binding // not recorded /// 0002113 // interleukin-33 binding // inferred from electronic annotation /// 0002114 // interleukin-33 receptor activity // inferred from electronic annotation /// 0002114 // interleukin-33 receptor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004908 // interleukin-1 receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370693_a_at M18630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M18630.1 /DB_XREF=gi:203492 /FEA=FLmRNA /CNT=1 /TID=Rn.31762.2 /TIER=FL /STK=1 /UG=Rn.31762 /LL=25275 /UG_GENE=Cnp /UG_TITLE=2,3- Cyclic nucleotide 3-phosphodiesterase /DEF=Rat CNS 2,3-cyclic nucleotide 3-phosphodiesterase (CNPI) mRNA, complete cds. /FL=gb:M18630.1 M18630 2',3'-cyclic nucleotide 3' phosphodiesterase Cnp 25275 NM_012809 0000226 // microtubule cytoskeleton organization // inferred from mutant phenotype /// 0001906 // cell killing // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0008152 // metabolic process // not recorded /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0009214 // cyclic nucleotide catabolic process // inferred from electronic annotation /// 0016070 // RNA metabolic process // inferred from electronic annotation 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031224 // intrinsic to membrane // inferred from mutant phenotype /// 0042470 // melanosome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004113 // 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity // not recorded /// 0004113 // 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity // traceable author statement /// 0004113 // 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1370694_at AB020967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB020967.1 /DB_XREF=gi:4827158 /GEN=NIPK /FEA=FLmRNA /CNT=1 /TID=Affx.1.53 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus sp. mRNA for kinase, complete cds. /PROD=kinase /FL=gb:AB020967.1 AB020967 tribbles homolog 3 (Drosophila) Trib3 246273 NM_144755 0006350 // transcription // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from sequence or structural similarity /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006915 // apoptosis // non-traceable author statement /// 0006915 // apoptosis // inferred from electronic annotation /// 0010827 // regulation of glucose transport // inferred from electronic annotation /// 0010827 // regulation of glucose transport // not recorded /// 0012501 // programmed cell death // non-traceable author statement /// 0016481 // negative regulation of transcription // not recorded /// 0032092 // positive regulation of protein binding // inferred from electronic annotation /// 0032092 // positive regulation of protein binding // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // not recorded /// 0043405 // regulation of MAP kinase activity // not recorded /// 0043405 // regulation of MAP kinase activity // inferred from sequence or structural similarity /// 0043405 // regulation of MAP kinase activity // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // not recorded /// 0045717 // negative regulation of fatty acid biosynthetic process // inferred from electronic annotation /// 0045717 // negative regulation of fatty acid biosynthetic process // not recorded /// 0051443 // positive regulation of ubiquitin-protein ligase activity // inferred from electronic annotation /// 0051443 // positive regulation of ubiquitin-protein ligase activity // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003714 // transcription corepressor activity // not recorded /// 0003714 // transcription corepressor activity // inferred from sequence or structural similarity /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from sequence or structural similarity /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0055106 // ubiquitin-protein ligase regulator activity // inferred from electronic annotation /// 0055106 // ubiquitin-protein ligase regulator activity // not recorded 1370695_s_at AB020967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB020967.1 /DB_XREF=gi:4827158 /GEN=NIPK /FEA=FLmRNA /CNT=1 /TID=Affx.1.53 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus sp. mRNA for kinase, complete cds. /PROD=kinase /FL=gb:AB020967.1 AB020967 tribbles homolog 3 (Drosophila) Trib3 246273 NM_144755 0006350 // transcription // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from sequence or structural similarity /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006915 // apoptosis // non-traceable author statement /// 0006915 // apoptosis // inferred from electronic annotation /// 0010827 // regulation of glucose transport // inferred from electronic annotation /// 0010827 // regulation of glucose transport // not recorded /// 0012501 // programmed cell death // non-traceable author statement /// 0016481 // negative regulation of transcription // not recorded /// 0032092 // positive regulation of protein binding // inferred from electronic annotation /// 0032092 // positive regulation of protein binding // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // not recorded /// 0043405 // regulation of MAP kinase activity // not recorded /// 0043405 // regulation of MAP kinase activity // inferred from sequence or structural similarity /// 0043405 // regulation of MAP kinase activity // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // not recorded /// 0045717 // negative regulation of fatty acid biosynthetic process // inferred from electronic annotation /// 0045717 // negative regulation of fatty acid biosynthetic process // not recorded /// 0051443 // positive regulation of ubiquitin-protein ligase activity // inferred from electronic annotation /// 0051443 // positive regulation of ubiquitin-protein ligase activity // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003714 // transcription corepressor activity // not recorded /// 0003714 // transcription corepressor activity // inferred from sequence or structural similarity /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from sequence or structural similarity /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0055106 // ubiquitin-protein ligase regulator activity // inferred from electronic annotation /// 0055106 // ubiquitin-protein ligase regulator activity // not recorded 1370696_at U15425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U15425.1 /DB_XREF=gi:562083 /FEA=FLmRNA /CNT=1 /TID=Rn.36116.1 /TIER=FL /STK=1 /UG=Rn.36116 /DEF=Rattus norvegicus membrane- and microfilament-associated protein p58 mRNA, complete cds. /PROD=p58 /FL=gb:U15425.1 U15425 0007016 // cytoskeletal anchoring at plasma membrane // traceable author statement /// 0016032 // viral reproduction // inferred from electronic annotation /// 0019068 // virion assembly // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from mutant phenotype 0005902 // microvillus // inferred from direct assay /// 0009898 // internal side of plasma membrane // inferred from direct assay /// 0019028 // viral capsid // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 1370697_a_at AF056034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF056034.1 /DB_XREF=gi:4003518 /FEA=FLmRNA /CNT=1 /TID=Rn.12358.1 /TIER=FL /STK=1 /UG=Rn.12358 /DEF=Rattus norvegicus F-actin binding protein b-Nexilin mRNA, complete cds. /PROD=F-actin binding protein b-Nexilin /FL=gb:AF056034.1 AF056034 nexilin (F actin binding protein) Nexn 246172 NM_139230 /// NM_139231 0030334 // regulation of cell migration // not recorded /// 0030334 // regulation of cell migration // inferred from sequence or structural similarity /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0051493 // regulation of cytoskeleton organization // not recorded /// 0051493 // regulation of cytoskeleton organization // inferred from sequence or structural similarity /// 0051493 // regulation of cytoskeleton organization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005912 // adherens junction // inferred from electronic annotation /// 0005924 // cell-substrate adherens junction // inferred from direct assay /// 0005924 // cell-substrate adherens junction // inferred from physical interaction /// 0030018 // Z disc // inferred from direct assay /// 0030018 // Z disc // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0008307 // structural constituent of muscle // inferred from sequence or structural similarity /// 0051015 // actin filament binding // inferred from direct assay /// 0051015 // actin filament binding // not recorded /// 0051015 // actin filament binding // inferred from electronic annotation 1370698_at M13506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M13506.1 /DB_XREF=gi:207580 /FEA=FLmRNA /CNT=1 /TID=Rn.9969.1 /TIER=FL /STK=1 /UG=Rn.9969 /UG_TITLE=Rat liver UDP-glucuronosyltransferase, phenobarbital-inducible form mRNA, complete cds /DEF=Rat liver UDP-glucuronosyltransferase, phenobarbital-inducible form mRNA, complete cds. /FL=gb:M13506.1 M13506 UDP glucuronosyltransferase 2 family, polypeptide B1 Ugt2b1 286954 NM_173295 0006711 // estrogen catabolic process // not recorded /// 0006805 // xenobiotic metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0017144 // drug metabolic process // traceable author statement /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0070980 // biphenyl catabolic process // inferred from direct assay /// 0071361 // cellular response to ethanol // inferred from expression pattern /// 0071378 // cellular response to growth hormone stimulus // inferred from expression pattern /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern /// 0071394 // cellular response to testosterone stimulus // inferred from expression pattern 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001972 // retinoic acid binding // not recorded /// 0015020 // glucuronosyltransferase activity // inferred from direct assay /// 0015020 // glucuronosyltransferase activity // inferred from mutant phenotype /// 0015020 // glucuronosyltransferase activity // not recorded /// 0015020 // glucuronosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1370699_a_at AF187818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF187818.2 /DB_XREF=gi:14043049 /GEN=Errp /FEA=FLmRNA /CNT=1 /TID=Rn.37227.1 /TIER=FL /STK=1 /UG=Rn.37227 /LL=24329 /DEF=Rattus norvegicus epidermal growth factor receptor related protein (Errp) mRNA, complete cds. /PROD=epidermal growth factor receptor relatedprotein /FL=gb:AF187818.2 AF187818 epidermal growth factor receptor /// peptidase D Egfr /// Pepd 24329 /// 292808 NM_001009641 /// NM_031507 0000186 // activation of MAPKK activity // inferred from mutant phenotype /// 0000902 // cell morphogenesis // not recorded /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0001892 // embryonic placenta development // not recorded /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0001942 // hair follicle development // not recorded /// 0001942 // hair follicle development // inferred from electronic annotation /// 0006412 // translation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006970 // response to osmotic stress // inferred from expression pattern /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0007165 // signal transduction // inferred from direct assay /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from direct assay /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from mutant phenotype /// 0007173 // epidermal growth factor receptor signaling pathway // not recorded /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from direct assay /// 0007435 // salivary gland morphogenesis // not recorded /// 0007435 // salivary gland morphogenesis // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008544 // epidermis development // not recorded /// 0008544 // epidermis development // inferred from electronic annotation /// 0009987 // cellular process // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0021795 // cerebral cortex cell migration // not recorded /// 0021795 // cerebral cortex cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030574 // collagen catabolic process // inferred from electronic annotation /// 0031659 // positive regulation of cyclin-dependent protein kinase activity involved in G1/S // not recorded /// 0031659 // positive regulation of cyclin-dependent protein kinase activity involved in G1/S // inferred from electronic annotation /// 0033993 // response to lipid // inferred from expression pattern /// 0035413 // positive regulation of catenin protein nuclear translocation // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042327 // positive regulation of phosphorylation // not recorded /// 0042327 // positive regulation of phosphorylation // inferred from electronic annotation /// 0042698 // ovulation cycle // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0043406 // positive regulation of MAP kinase activity // not recorded /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0043586 // tongue development // inferred from expression pattern /// 0045429 // positive regulation of nitric oxide biosynthetic process // not recorded /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045930 // negative regulation of mitotic cell cycle // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0048143 // astrocyte activation // inferred from mutant phenotype /// 0048546 // digestive tract morphogenesis // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0048812 // neuron projection morphogenesis // inferred from mutant phenotype /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050999 // regulation of nitric-oxide synthase activity // not recorded /// 0050999 // regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from mutant phenotype /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype /// 0060571 // morphogenesis of an epithelial fold // not recorded /// 0060571 // morphogenesis of an epithelial fold // inferred from electronic annotation /// 0070141 // response to UV-A // not recorded /// 0070141 // response to UV-A // inferred from electronic annotation 0005622 // intracellular // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030139 // endocytic vesicle // inferred from direct assay /// 0030139 // endocytic vesicle // not recorded /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0070435 // Shc-EGFR complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004716 // receptor signaling protein tyrosine kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // not recorded /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005006 // epidermal growth factor receptor activity // inferred from direct assay /// 0005006 // epidermal growth factor receptor activity // inferred from mutant phenotype /// 0005006 // epidermal growth factor receptor activity // not recorded /// 0005006 // epidermal growth factor receptor activity // traceable author statement /// 0005006 // epidermal growth factor receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008235 // metalloexopeptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016805 // dipeptidase activity // inferred from electronic annotation /// 0019903 // protein phosphatase binding // not recorded /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0030235 // nitric-oxide synthase regulator activity // not recorded /// 0030235 // nitric-oxide synthase regulator activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0048408 // epidermal growth factor binding // inferred from mutant phenotype /// 0051015 // actin filament binding // not recorded /// 0051015 // actin filament binding // inferred from electronic annotation 1370700_at AF190256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF190256.1 /DB_XREF=gi:6164926 /FEA=FLmRNA /CNT=1 /TID=Rn.48742.1 /TIER=FL /STK=1 /UG=Rn.48742 /DEF=Rattus norvegicus CTP:phosphocholine cytidylyltransferase mRNA, complete cds. /PROD=CTP:phosphocholine cytidylyltransferase /FL=gb:AF190256.1 AF190256 phosphate cytidylyltransferase 1, choline, beta Pcyt1b 286936 NM_173151 0001541 // ovarian follicle development // inferred from electronic annotation /// 0001541 // ovarian follicle development // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004105 // choline-phosphate cytidylyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1370701_at AF419333 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF419333.1 /DB_XREF=gi:16225669 /FEA=FLmRNA /CNT=1 /TID=Rn.81067.1 /TIER=FL /STK=1 /UG=Rn.81067 /DEF=Rattus norvegicus GABA theta subunit mRNA, complete cds. /PROD=GABA theta subunit /FL=gb:AF419333.1 AF419333 gamma-aminobutyric acid (GABA) receptor, theta Gabrq 65187 NM_031733 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004890 // GABA-A receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation 1370702_at D50671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D50671.1 /DB_XREF=gi:1060974 /FEA=FLmRNA /CNT=1 /TID=Rn.10670.1 /TIER=FL /STK=1 /UG=Rn.10670 /DEF=Rat mRNA for GABA receptor rho-3 subunit, complete cds. /PROD=GABA receptor rho-3 subunit precursor /FL=gb:D50671.1 D50671 gamma-aminobutyric acid (GABA) receptor, rho 3 Gabrr3 192258 NM_138897 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay 1370703_at M35297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M35297.1 /DB_XREF=gi:206809 /GEN=RTA /FEA=FLmRNA /CNT=1 /TID=Rn.9848.1 /TIER=FL /STK=1 /UG=Rn.9848 /DEF=Rat pot. G protein coupled receptor (RTA) mRNA, complete cds. /PROD=G-protein coupled receptor /FL=gb:M35297.1 M35297 MAS-related GPR, member F Mrgprf 266762 NM_153722 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1370704_at AB073756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB073756.1 /DB_XREF=gi:18765773 /GEN=GIRK2B-2 /FEA=FLmRNA /CNT=1 /TID=Rn.10185.3 /TIER=FL /STK=1 /UG=Rn.10185 /LL=25743 /DEF=Rattus norvegicus GIRK2B-2 gene for GIRK2B, complete cds. /PROD=GIRK2B /FL=gb:AB073756.1 AB073756 potassium inwardly-rectifying channel, subfamily J, member 6 Kcnj6 25743 NM_013192 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // not recorded /// 0034765 // regulation of ion transmembrane transport // not recorded /// 0042403 // thyroid hormone metabolic process // not recorded /// 0051602 // response to electrical stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0032809 // neuronal cell body membrane // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0015467 // G-protein activated inward rectifier potassium channel activity // inferred from electronic annotation /// 0015467 // G-protein activated inward rectifier potassium channel activity // not recorded 1370705_at AF277900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF277900.1 /DB_XREF=gi:12483899 /FEA=FLmRNA /CNT=1 /TID=Rn.64641.1 /TIER=FL /STK=1 /UG=Rn.64641 /DEF=Rattus norvegicus zinc finger protein HIT-4 mRNA, complete cds. /PROD=zinc finger protein HIT-4 /FL=gb:AF277900.1 AF277900 zinc finger protein 597 Znf597 266774 NM_153732 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370706_a_at U39943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U39943.1 /DB_XREF=gi:1173849 /GEN=CYP2J3 /FEA=FLmRNA /CNT=1 /TID=Rn.37480.1 /TIER=FL /STK=1 /UG=Rn.37480 /DEF=Rattus norvegicus cytochrome P450 monooxygenase (CYP2J3) mRNA, complete cds. /PROD=cytochrome P450 monooxygenase /FL=gb:U39943.1 U39943 cytochrome P450, family 2, subfamily j, polypeptide 3 Cyp2j3 313375 NM_175766 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1370707_at U91679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U91679.1 /DB_XREF=gi:3033418 /FEA=FLmRNA /CNT=1 /TID=Rn.9775.2 /TIER=FL /STK=1 /UG=Rn.9775 /DEF=Rattus norvegicus ETS domain transcription factor Pet-1 mRNA, complete cds. /PROD=ETS domain transcription factor PET-1 /FL=gb:U91679.1 U91679 FEV (ETS oncogene family) Fev 246271 NM_144753 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1370708_a_at M61937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M61937.1 /DB_XREF=gi:203917 /FEA=FLmRNA /CNT=1 /TID=Rn.10021.2 /TIER=FL /STK=1 /UG=Rn.10021 /DEF=R.norvegicus dihydrodiol dehydrogenase mRNA, complete cds. /PROD=dihydrodiol dehydrogenase /FL=gb:M61937.1 M61937 aldo-keto reductase family 1, member C14 Akr1c14 191574 NM_138547 0008152 // metabolic process // not recorded /// 0008202 // steroid metabolic process // traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0016229 // steroid dehydrogenase activity // inferred from mutant phenotype /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0047023 // 3(or 17)-alpha-hydroxysteroid dehydrogenase activity // inferred from electronic annotation /// 0047023 // 3(or 17)-alpha-hydroxysteroid dehydrogenase activity // not recorded /// 0047026 // 3-alpha-hydroxysteroid dehydrogenase (A-specific) activity // inferred from electronic annotation 1370709_at AB071036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB071036.1 /DB_XREF=gi:18565265 /GEN=rLib /FEA=FLmRNA /CNT=1 /TID=Rn.81228.1 /TIER=FL /STK=1 /UG=Rn.81228 /DEF=Rattus norvegicus rLib mRNA for Lib, complete cds. /PROD=Lib /FL=gb:AB071036.1 AB071036 leucine rich repeat containing 15 Lrrc15 246296 NM_145083 0007154 // cell communication // traceable author statement 0005622 // intracellular // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1370710_at L78306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L78306.1 /DB_XREF=gi:2160222 /FEA=FLmRNA /CNT=1 /TID=Rn.10768.1 /TIER=FL /STK=1 /UG=Rn.10768 /DEF=Rattus norvegicus hydroxyindole-O-methyltransferase mRNA, complete cds. /PROD=hydroxyindole-O-methyltransferase /FL=gb:L78306.1 L78306 acetylserotonin O-methyltransferase Asmt 246281 NM_144759 0030187 // melatonin biosynthetic process // inferred from direct assay 0005829 // cytosol // not recorded 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008171 // O-methyltransferase activity // inferred from electronic annotation /// 0008172 // S-methyltransferase activity // not recorded /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0017096 // acetylserotonin O-methyltransferase activity // inferred from direct assay /// 0017096 // acetylserotonin O-methyltransferase activity // inferred from electronic annotation 1370711_a_at AF000900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF000900.1 /DB_XREF=gi:3941276 /GEN=p58p45 /FEA=FLmRNA /CNT=1 /TID=Rn.11099.2 /TIER=FL /STK=1 /UG=Rn.11099 /DEF=Rattus norvegicus nucleoporin p45 (p58p45) mRNA, complete cds. /PROD=p45 /FL=gb:AF000900.1 AF000900 nucleoporin like 1 Nupl1 245922 NM_139091 0006810 // transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005643 // nuclear pore // inferred from direct assay /// 0005643 // nuclear pore // non-traceable author statement /// 0005643 // nuclear pore // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0005487 // nucleocytoplasmic transporter activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1370712_at U36899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U36899.1 /DB_XREF=gi:1055255 /FEA=FLmRNA /CNT=1 /TID=Rn.10145.1 /TIER=FL /STK=1 /UG=Rn.10145 /DEF=Rattus norvegicus putative pheromone receptor VN2 mRNA, complete cds. /PROD=pheromone receptor VN2 /FL=gb:U36899.1 U36899 vomeronasal 1 receptor, 102 Vom1r102 286957 NM_173298 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0019236 // response to pheromone // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0016503 // pheromone receptor activity // inferred from electronic annotation 1370713_at L24388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L24388.1 /DB_XREF=gi:1129064 /GEN=GTA /FEA=FLmRNA /CNT=1 /TID=Rn.10204.1 /TIER=FL /STK=1 /UG=Rn.10204 /DEF=Rattus norvegicus galactosyltransferase associated kinase (GTA) mRNA, complete cds. /PROD=galactosyltransferase-associated kinase /FL=gb:L24388.1 L24388 cell division cycle 2 homolog (S.pombe)-like 1 Cdc2l1 252879 NM_145766 0005975 // carbohydrate metabolic process // inferred from direct assay /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006002 // fructose 6-phosphate metabolic process // inferred from direct assay /// 0006094 // gluconeogenesis // inferred from direct assay /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042132 // fructose 1,6-bisphosphate 1-phosphatase activity // inferred from direct assay /// 0042132 // fructose 1,6-bisphosphate 1-phosphatase activity // inferred from electronic annotation /// 0042132 // fructose 1,6-bisphosphate 1-phosphatase activity // traceable author statement /// 0042578 // phosphoric ester hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048029 // monosaccharide binding // inferred from direct assay 1370714_a_at M18769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M18769.1 /DB_XREF=gi:204254 /FEA=FLmRNA /CNT=1 /TID=Rn.54567.1 /TIER=FL /STK=1 /UG=Rn.54567 /UG_TITLE=Rat beta-galactoside-alpha 2,6-sialyltransferase mRNA /DEF=Rat liver beta-galactoside alpha 2,6-sialyltransferase mRNA, complete cds. /FL=gb:M18769.1 M18769 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 St6gal1 25197 NM_001113344 /// NM_147205 0006486 // protein glycosylation // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0003835 // beta-galactoside alpha-2,6-sialyltransferase activity // inferred from electronic annotation /// 0008373 // sialyltransferase activity // inferred from electronic annotation /// 0008373 // sialyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1370715_at AF064856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF064856.1 /DB_XREF=gi:3169625 /FEA=FLmRNA /CNT=1 /TID=Affx.1.56 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus sp. 7acomp protein mRNA, complete cds. /PROD=7acomp protein /FL=gb:AF064856.1 AF064856 similar to mKIAA0998 protein RGD1563583 299208 XR_007629 /// XR_086285 0006464 // protein modification process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004835 // tubulin-tyrosine ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1370716_at AF012347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF012347.1 /DB_XREF=gi:2689628 /FEA=FLmRNA /CNT=1 /TID=Rn.10862.1 /TIER=FL /STK=1 /UG=Rn.10862 /LL=85435 /UG_GENE=Madh9 /DEF=Rattus norvegicus Smad8 mRNA, complete cds. /PROD=Smad8 /FL=gb:AF012347.1 AF012347 SMAD family member 9 Smad9 85435 NM_138872 0001657 // ureteric bud development // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001880 // Mullerian duct regression // inferred from mutant phenotype /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030509 // BMP signaling pathway // not recorded /// 0030901 // midbrain development // inferred from electronic annotation /// 0030901 // midbrain development // not recorded /// 0030902 // hindbrain development // inferred from electronic annotation /// 0030902 // hindbrain development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // inferred from direct assay /// 0045941 // positive regulation of transcription // inferred from direct assay /// 0071407 // cellular response to organic cyclic substance // inferred from electronic annotation /// 0071407 // cellular response to organic cyclic substance // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1370717_at AF169549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF169549.1 /DB_XREF=gi:5733727 /FEA=FLmRNA /CNT=1 /TID=Affx.1.57 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus gamma-synergin mRNA, complete cds. /PROD=gamma-synergin /FL=gb:AF169549.1 AF169549 synergin, gamma Synrg 84479 NM_053419 0006810 // transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030130 // clathrin coat of trans-Golgi network vesicle // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation 1370718_at AF375463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF375463.1 /DB_XREF=gi:14210267 /FEA=FLmRNA /CNT=1 /TID=Rn.74259.1 /TIER=FL /STK=1 /UG=Rn.74259 /LL=60567 /UG_GENE=Syt10 /DEF=Rattus norvegicus synaptotagmin 10 mRNA, complete cds. /PROD=synaptotagmin 10 /FL=gb:AF375463.1 AF375463 synaptotagmin X Syt10 60567 NM_031666 0006810 // transport // inferred from electronic annotation /// 0006950 // response to stress // inferred from expression pattern /// 0050803 // regulation of synapse structure and activity // non-traceable author statement 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370719_a_at AB052921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB052921.1 /DB_XREF=gi:17736807 /GEN=rMCLC-5 /FEA=FLmRNA /CNT=1 /TID=Rn.26586.4 /TIER=FL /STK=1 /UG=Rn.26586 /LL=170927 /DEF=Rattus norvegicus rMCLC-5 mRNA for Mid-1-related chloride channel 5, complete cds. /PROD=Mid-1-related chloride channel 5 /FL=gb:AB052921.1 AB052921 chloride channel CLIC-like 1 Clcc1 170927 NM_133414 0006821 // chloride transport // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // non-traceable author statement /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from mutant phenotype /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005792 // microsome // inferred from mutant phenotype /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from mutant phenotype /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005254 // chloride channel activity // inferred from direct assay /// 0005254 // chloride channel activity // inferred from mutant phenotype 1370720_at U36898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U36898.1 /DB_XREF=gi:1055253 /FEA=FLmRNA /CNT=1 /TID=Rn.3796.1 /TIER=FL /STK=1 /UG=Rn.3796 /DEF=Rattus norvegicus putative pheromone receptor VN6 mRNA, complete cds. /PROD=pheromone receptor VN6 /FL=gb:U36898.1 U36898 vomeronasal 1 receptor, 90 Vom1r90 266771 NM_153729 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0019236 // response to pheromone // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0016503 // pheromone receptor activity // inferred from electronic annotation 1370721_a_at AJ224680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ224680.1 /DB_XREF=gi:2924368 /GEN=GARP /FEA=FLmRNA /CNT=1 /TID=Rn.10733.3 /TIER=FL /STK=1 /UG=Rn.10733 /LL=83686 /DEF=Rattus norvegicus mRNA for glutamic-acid rich protein, complete CDS. /PROD=glutamic-acid rich protein /FL=gb:AJ224680.1 AJ224680 cyclic nucleotide gated channel beta 1 Cngb1 83686 NM_031809 0007601 // visual perception // traceable author statement /// 0007602 // phototransduction // not recorded /// 0007602 // phototransduction // inferred from electronic annotation /// 0007608 // sensory perception of smell // traceable author statement /// 0045494 // photoreceptor cell maintenance // not recorded /// 0045494 // photoreceptor cell maintenance // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation 0005221 // intracellular cyclic nucleotide activated cation channel activity // traceable author statement 1370722_at AJ224680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ224680.1 /DB_XREF=gi:2924368 /GEN=GARP /FEA=FLmRNA /CNT=1 /TID=Rn.10733.3 /TIER=FL /STK=1 /UG=Rn.10733 /LL=83686 /DEF=Rattus norvegicus mRNA for glutamic-acid rich protein, complete CDS. /PROD=glutamic-acid rich protein /FL=gb:AJ224680.1 AJ224680 cyclic nucleotide gated channel beta 1 Cngb1 83686 NM_031809 0007601 // visual perception // traceable author statement /// 0007602 // phototransduction // not recorded /// 0007602 // phototransduction // inferred from electronic annotation /// 0007608 // sensory perception of smell // traceable author statement /// 0045494 // photoreceptor cell maintenance // not recorded /// 0045494 // photoreceptor cell maintenance // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation 0005221 // intracellular cyclic nucleotide activated cation channel activity // traceable author statement 1370723_at AF374272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF374272.1 /DB_XREF=gi:19386918 /FEA=FLmRNA /CNT=1 /TID=Rn.52189.1 /TIER=FL /STK=1 /UG=Rn.52189 /DEF=Rattus norvegicus tamalin mRNA, complete cds. /PROD=tamalin /FL=gb:AF374272.1 AF374272 GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein Grasp 192254 NM_138894 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0008104 // protein localization // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030165 // PDZ domain binding // inferred from direct assay /// 0030306 // ADP-ribosylation factor binding // inferred from direct assay 1370724_a_at D78019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D78019.1 /DB_XREF=gi:1041035 /GEN=NFI-A /FEA=FLmRNA /CNT=1 /TID=Rn.10550.4 /TIER=FL /STK=1 /UG=Rn.10550 /LL=25492 /DEF=Rat mRNA for NFI-A3, complete cds. /PROD=NFI-A3 /FL=gb:D78019.1 D78019 nuclear factor I/A Nfia 25492 NM_012988 0006260 // DNA replication // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded 1370725_a_at U07993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U07993.1 /DB_XREF=gi:508225 /FEA=FLmRNA /CNT=1 /TID=Rn.10992.2 /TIER=FL /STK=1 /UG=Rn.10992 /LL=25634 /UG_GENE=G6pc /DEF=Rattus norvegicus Sprague-Dawley glucose-6-phosphatase mRNA, complete cds. /PROD=glucose-6-phosphatase /FL=gb:U07993.1 U07993 glucose-6-phosphatase, catalytic subunit G6pc 25634 NM_013098 0005977 // glycogen metabolic process // not recorded /// 0005980 // glycogen catabolic process // not recorded /// 0006094 // gluconeogenesis // inferred from direct assay /// 0006094 // gluconeogenesis // not recorded /// 0006094 // gluconeogenesis // traceable author statement /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // not recorded /// 0006796 // phosphate metabolic process // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0008202 // steroid metabolic process // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0015760 // glucose-6-phosphate transport // not recorded /// 0016311 // dephosphorylation // not recorded /// 0032094 // response to food // inferred from expression pattern /// 0035264 // multicellular organism growth // not recorded /// 0042593 // glucose homeostasis // inferred from mutant phenotype /// 0042593 // glucose homeostasis // not recorded /// 0042632 // cholesterol homeostasis // not recorded /// 0046415 // urate metabolic process // not recorded /// 0046838 // phosphorylated carbohydrate dephosphorylation // inferred from direct assay /// 0051156 // glucose 6-phosphate metabolic process // inferred from direct assay /// 0051156 // glucose 6-phosphate metabolic process // not recorded /// 0055088 // lipid homeostasis // inferred from mutant phenotype 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004346 // glucose-6-phosphatase activity // inferred from direct assay /// 0004346 // glucose-6-phosphatase activity // not recorded /// 0004346 // glucose-6-phosphatase activity // traceable author statement /// 0004346 // glucose-6-phosphatase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042301 // phosphate binding // not recorded 1370726_at U36785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U36785.1 /DB_XREF=gi:1039469 /FEA=FLmRNA /CNT=1 /TID=Rn.10226.1 /TIER=FL /STK=1 /UG=Rn.10226 /DEF=Rattus norvegicus putative pheromone receptor VN1 mRNA, complete cds. /PROD=pheromone receptor VN1 /FL=gb:U36785.1 U36785 vomeronasal 1 receptor, 105 Vom1r105 286893 NM_173113 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0019236 // response to pheromone // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0016503 // pheromone receptor activity // inferred from electronic annotation 1370727_at AB052170 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB052170.1 /DB_XREF=gi:11610600 /GEN=rSCDGF-B /FEA=FLmRNA /CNT=1 /TID=Rn.64493.1 /TIER=FL /STK=1 /UG=Rn.64493 /LL=66018 /DEF=Rattus norvegicus rSCDGF-B mRNA for spinal-cord derived growth factor-B, complete cds. /PROD=spinal-cord derived growth factor-B /FL=gb:AB052170.1 AB052170 platelet-derived growth factor, D polypeptide Pdgfd 66018 NM_023962 0050730 // regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0051781 // positive regulation of cell division // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0008083 // growth factor activity // inferred from electronic annotation 1370728_at AY044251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY044251.1 /DB_XREF=gi:18175300 /FEA=FLmRNA /CNT=1 /TID=Rn.81210.1 /TIER=FL /STK=1 /UG=Rn.81210 /DEF=Rattus norvegicus IL-13 receptor alpha 1 mRNA, complete cds. /PROD=IL-13 receptor alpha 1 /FL=gb:AY044251.1 AY044251 interleukin 13 receptor, alpha 1 Il13ra1 252963 NM_145789 0002639 // positive regulation of immunoglobulin production // inferred from direct assay /// 0030890 // positive regulation of B cell proliferation // inferred from direct assay 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // traceable author statement /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016515 // interleukin-13 receptor activity // inferred from physical interaction 1370729_at AY034073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY034073.1 /DB_XREF=gi:14516832 /FEA=FLmRNA /CNT=1 /TID=Rn.81037.1 /TIER=FL /STK=1 /UG=Rn.81037 /DEF=Rattus norvegicus calcium-responsive transcription coactivator mRNA, complete cds. /PROD=calcium-responsive transcription coactivator /FL=gb:AY034073.1 AY034073 synovial sarcoma translocation gene on chromosome 18-like 1 Ss18l1 192352 NM_138918 0006350 // transcription // inferred from electronic annotation /// 0016358 // dendrite development // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0050773 // regulation of dendrite development // inferred from direct assay 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0000780 // condensed nuclear chromosome, centromeric region // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0016604 // nuclear body // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0016563 // transcription activator activity // inferred from direct assay 1370730_a_at AF409106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF409106.1 /DB_XREF=gi:15426023 /FEA=FLmRNA /CNT=1 /TID=Rn.10936.3 /TIER=FL /STK=1 /UG=Rn.10936 /LL=25321 /UG_GENE=Ghrhr /DEF=Rattus norvegicus putative growth hormone-releasing hormone receptor-related protein precursor, mRNA, complete cds, alternatively spliced. /PROD=putative growth hormone-releasing hormonereceptor-related protein precursor /FL=gb:AF409106.1 AF409106 growth hormone releasing hormone receptor Ghrhr 25321 NM_012850 0007165 // signal transduction // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from direct assay /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from direct assay /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007190 // activation of adenylate cyclase activity // inferred from direct assay /// 0007595 // lactation // inferred from electronic annotation /// 0007595 // lactation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008340 // determination of adult lifespan // inferred from electronic annotation /// 0008340 // determination of adult lifespan // not recorded /// 0019933 // cAMP-mediated signaling // not recorded /// 0019933 // cAMP-mediated signaling // inferred from electronic annotation /// 0021984 // adenohypophysis development // inferred from electronic annotation /// 0021984 // adenohypophysis development // not recorded /// 0030104 // water homeostasis // inferred from electronic annotation /// 0030104 // water homeostasis // not recorded /// 0030252 // growth hormone secretion // not recorded /// 0030252 // growth hormone secretion // inferred from electronic annotation /// 0030816 // positive regulation of cAMP metabolic process // inferred from direct assay /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // not recorded /// 0030879 // mammary gland development // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0032868 // response to insulin stimulus // not recorded /// 0032868 // response to insulin stimulus // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // not recorded /// 0033143 // regulation of steroid hormone receptor signaling pathway // inferred from electronic annotation /// 0033143 // regulation of steroid hormone receptor signaling pathway // not recorded /// 0040008 // regulation of growth // traceable author statement /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0042445 // hormone metabolic process // inferred from electronic annotation /// 0042445 // hormone metabolic process // not recorded /// 0043567 // regulation of insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0043567 // regulation of insulin-like growth factor receptor signaling pathway // not recorded /// 0043627 // response to estrogen stimulus // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // not recorded /// 0046887 // positive regulation of hormone secretion // inferred from electronic annotation /// 0046887 // positive regulation of hormone secretion // not recorded /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // not recorded /// 0060124 // positive regulation of growth hormone secretion // inferred from electronic annotation /// 0060124 // positive regulation of growth hormone secretion // not recorded /// 0060133 // somatotropin secreting cell development // inferred from electronic annotation /// 0060133 // somatotropin secreting cell development // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005637 // nuclear inner membrane // not recorded /// 0005640 // nuclear outer membrane // inferred from electronic annotation /// 0005640 // nuclear outer membrane // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded /// 0030141 // stored secretory granule // inferred from electronic annotation /// 0030141 // stored secretory granule // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016520 // growth hormone-releasing hormone receptor activity // inferred from direct assay /// 0016520 // growth hormone-releasing hormone receptor activity // not recorded /// 0016520 // growth hormone-releasing hormone receptor activity // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred from direct assay /// 0017046 // peptide hormone binding // not recorded /// 0017046 // peptide hormone binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded 1370731_at L08134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L08134.1 /DB_XREF=gi:986942 /GEN=sgp158 /FEA=FLmRNA /CNT=1 /TID=Rn.10110.1 /TIER=FL /STK=1 /UG=Rn.10110 /DEF=Rat proline-rich glycoprotein (sgp158) gene, complete cds. /PROD=glycoprotein /FL=gb:L08134.1 L08134 proline-rich glycoprotein (sgp158) Sgp158 245985 NM_139184 1370732_at U36895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U36895.1 /DB_XREF=gi:1055247 /FEA=FLmRNA /CNT=1 /TID=Rn.10141.1 /TIER=FL /STK=1 /UG=Rn.10141 /DEF=Rattus norvegicus putative pheromone receptor VN3 mRNA, complete cds. /PROD=pheromone receptor VN3 /FL=gb:U36895.1 U36895 vomeronasal 1 receptor, 100 Vom1r100 297439 NM_173296 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0019236 // response to pheromone // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0016503 // pheromone receptor activity // inferred from electronic annotation 1370733_at AY057076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY057076.1 /DB_XREF=gi:16508156 /FEA=FLmRNA /CNT=1 /TID=Rn.81081.1 /TIER=FL /STK=1 /UG=Rn.81081 /DEF=Rattus norvegicus lipogenin mRNA, complete cds. /PROD=lipogenin /FL=gb:AY057076.1 AY057076 Lipogenin Lipogenin 252964 NM_145790 1370734_a_at U63111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U63111.1 /DB_XREF=gi:1522690 /FEA=FLmRNA /CNT=1 /TID=Rn.21392.3 /TIER=FL /STK=1 /UG=Rn.21392 /LL=25254 /UG_GENE=Dspp /DEF=Rattus norvegicus dentin phosphoprotein precursor mRNA, complete cds. /PROD=dentin phosphoprotein precursor /FL=gb:U63111.1 U63111 dentin sialophosphoprotein Dspp 25254 NM_012790 0030154 // cell differentiation // inferred from expression pattern /// 0031214 // biomineral tissue development // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // inferred from expression pattern /// 0042476 // odontogenesis // inferred from expression pattern /// 0071460 // cellular response to cell-matrix adhesion // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay 1370735_at AF010293 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF010293.1 /DB_XREF=gi:2317703 /GEN=U131 /FEA=FLmRNA /CNT=1 /TID=Rn.10792.1 /TIER=FL /STK=1 /UG=Rn.10792 /DEF=Rattus norvegicus olfactory receptor (U131) mRNA, complete cds. /PROD=olfactory receptor /FL=gb:AF010293.1 AF010293 olfactory receptor 1278 Olr1278 286913 NM_173129 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from reviewed computational analysis /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0050911 // detection of chemical stimulus involved in sensory perception of smell // inferred from reviewed computational analysis 0016021 // integral to membrane // inferred from reviewed computational analysis /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from reviewed computational analysis /// 0004984 // olfactory receptor activity // inferred from electronic annotation 1370736_s_at S69160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:S69160.1 /DB_XREF=gi:545492 /GEN=TRH-R /FEA=FLmRNA /CNT=1 /TID=Affx.1.58 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus sp. thyrotropin-releasing hormone receptor (TRH-R) mRNA, complete cds. /PROD=thyrotropin-releasing hormone receptor /FL=gb:S69160.1 S69160 thyrotropin releasing hormone receptor Trhr 25570 NM_013047 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0090073 // positive regulation of protein homodimerization activity // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004997 // thyrotropin-releasing hormone receptor activity // inferred from direct assay /// 0004997 // thyrotropin-releasing hormone receptor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay 1370737_at AF293333 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF293333.1 /DB_XREF=gi:15419562 /FEA=FLmRNA /CNT=1 /TID=Rn.81022.1 /TIER=FL /STK=1 /UG=Rn.81022 /DEF=Rattus norvegicus caspase-9 short form mRNA, complete cds. /PROD=caspase-9 short form /FL=gb:AF293333.1 AF293333 caspase 9, apoptosis-related cysteine peptidase Casp9 58918 NM_031632 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from mutant phenotype /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // traceable author statement /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from mutant phenotype /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0009411 // response to UV // inferred from electronic annotation /// 0009411 // response to UV // not recorded /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0032025 // response to cobalt ion // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0034349 // glial cell apoptosis // inferred from expression pattern /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043525 // positive regulation of neuron apoptosis // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptosis // not recorded /// 0046677 // response to antibiotic // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008234 // cysteine-type peptidase activity // inferred from direct assay /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay 1370738_a_at AF220558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF220558.1 /DB_XREF=gi:6851386 /FEA=FLmRNA /CNT=1 /TID=Rn.41863.2 /TIER=FL /STK=1 /UG=Rn.41863 /LL=59299 /UG_GENE=Trdn /DEF=Rattus norvegicus triadin 1 mRNA, complete cds. /PROD=triadin 1 /FL=gb:AF220558.1 AF220558 triadin Trdn 59299 NM_021666 0006874 // cellular calcium ion homeostasis // inferred from mutant phenotype /// 0006874 // cellular calcium ion homeostasis // non-traceable author statement /// 0010880 // regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014902 // myotube differentiation // inferred from expression pattern /// 0032235 // negative regulation of calcium ion transport via store-operated calcium channel activity // inferred from mutant phenotype 0005737 // cytoplasm // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0014701 // junctional sarcoplasmic reticulum membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // traceable author statement 1370739_x_at AF220558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF220558.1 /DB_XREF=gi:6851386 /FEA=FLmRNA /CNT=1 /TID=Rn.41863.2 /TIER=FL /STK=1 /UG=Rn.41863 /LL=59299 /UG_GENE=Trdn /DEF=Rattus norvegicus triadin 1 mRNA, complete cds. /PROD=triadin 1 /FL=gb:AF220558.1 AF220558 triadin Trdn 59299 NM_021666 0006874 // cellular calcium ion homeostasis // inferred from mutant phenotype /// 0006874 // cellular calcium ion homeostasis // non-traceable author statement /// 0010880 // regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014902 // myotube differentiation // inferred from expression pattern /// 0032235 // negative regulation of calcium ion transport via store-operated calcium channel activity // inferred from mutant phenotype 0005737 // cytoplasm // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0014701 // junctional sarcoplasmic reticulum membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // traceable author statement 1370740_at U56863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U56863.1 /DB_XREF=gi:1354759 /FEA=FLmRNA /CNT=1 /TID=Rn.37467.1 /TIER=FL /STK=1 /UG=Rn.37467 /DEF=Rattus norvegicus Ly-49.9 antigen mRNA, complete cds. /PROD=Ly-49.9 antigen /FL=gb:U56863.1 U56863 killer cell lectin-like receptor, subfamily A, member 5 Klra5 297666 NM_198746 0030101 // natural killer cell activation // inferred from mutant phenotype 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1370741_at AF034896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF034896.1 /DB_XREF=gi:4104322 /GEN=SCR D-8 /FEA=FLmRNA /CNT=1 /TID=Rn.14520.1 /TIER=FL /STK=1 /UG=Rn.14520 /DEF=Rattus norvegicus olfactory receptor-like protein (SCR D-8) mRNA, complete cds. /PROD=olfactory receptor-like protein /FL=gb:AF034896.1 AF034896 olfactory receptor 1696 Olr1696 294158 NM_206850 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from reviewed computational analysis /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0050911 // detection of chemical stimulus involved in sensory perception of smell // inferred from reviewed computational analysis 0016021 // integral to membrane // inferred from reviewed computational analysis /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from reviewed computational analysis /// 0004984 // olfactory receptor activity // inferred from electronic annotation 1370742_at AF271155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF271155.1 /DB_XREF=gi:8515812 /FEA=FLmRNA /CNT=1 /TID=Rn.54001.1 /TIER=FL /STK=1 /UG=Rn.54001 /LL=64029 /UG_GENE=Rsd6 /DEF=Rattus norvegicus RSD-6 mRNA, complete cds. /PROD=RSD-6 /FL=gb:AF271155.1 AF271155 casein-like phosphoprotein Clph 64029 NM_022263 0007283 // spermatogenesis // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from direct assay 1370743_a_at AY079189 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY079189.1 /DB_XREF=gi:19386561 /FEA=FLmRNA /CNT=1 /TID=Rn.10614.3 /TIER=FL /STK=1 /UG=Rn.10614 /LL=171105 /UG_GENE=Vp165 /DEF=Rattus norvegicus vesicular protein vp-165 short isoform mRNA, complete cds. /PROD=vesicular protein vp-165 short isoform /FL=gb:AY079189.1 AY079189 leucyl/cystinyl aminopeptidase Lnpep 171105 NM_001113403 /// NM_133574 0006508 // proteolysis // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from direct assay /// 0010813 // neuropeptide catabolic process // inferred from mutant phenotype /// 0030147 // natriuresis // inferred from direct assay /// 0030163 // protein catabolic process // not recorded /// 0043171 // peptide catabolic process // inferred from direct assay /// 0043171 // peptide catabolic process // inferred from mutant phenotype /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from mutant phenotype 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0032593 // insulin-responsive compartment // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043229 // intracellular organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded 0001595 // angiotensin receptor activity // inferred from mutant phenotype /// 0004177 // aminopeptidase activity // inferred from direct assay /// 0004177 // aminopeptidase activity // inferred from mutant phenotype /// 0004177 // aminopeptidase activity // not recorded /// 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation 1370744_at AF208288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF208288.1 /DB_XREF=gi:6644327 /GEN=GPR26 /FEA=FLmRNA /CNT=1 /TID=Rn.48779.1 /TIER=FL /STK=1 /UG=Rn.48779 /DEF=Rattus norvegicus orphan G protein-coupled receptor GPR26 (GPR26) mRNA, complete cds. /PROD=orphan G protein-coupled receptor GPR26 /FL=gb:AF208288.1 AF208288 G protein-coupled receptor 26 Gpr26 192153 NM_138841 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from sequence or structural similarity 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // not recorded /// 0004930 // G-protein coupled receptor activity // inferred from sequence or structural similarity /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1370745_at AB013454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB013454.1 /DB_XREF=gi:3868787 /GEN=NaPi-2 /FEA=FLmRNA /CNT=1 /TID=Rn.34429.1 /TIER=FL /STK=1 /UG=Rn.34429 /DEF=Rattus norvegicus mRNA for NaPi-2 beta, complete cds. /PROD=NaPi-2 beta /FL=gb:AB013454.1 AB013454 solute carrier family 34 (sodium phosphate), member 1 Slc34a1 25548 NM_013030 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006817 // phosphate transport // inferred from electronic annotation /// 0006817 // phosphate transport // inferred from mutant phenotype /// 0006817 // phosphate transport // not recorded /// 0010288 // response to lead ion // inferred from electronic annotation /// 0010288 // response to lead ion // not recorded /// 0032026 // response to magnesium ion // inferred from expression pattern /// 0046686 // response to cadmium ion // inferred from electronic annotation /// 0046686 // response to cadmium ion // not recorded /// 0046689 // response to mercury ion // inferred from electronic annotation /// 0046689 // response to mercury ion // not recorded /// 0046849 // bone remodeling // inferred from electronic annotation /// 0046849 // bone remodeling // not recorded /// 0055062 // phosphate ion homeostasis // inferred from electronic annotation /// 0055062 // phosphate ion homeostasis // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from direct assay 0005515 // protein binding // not recorded /// 0015293 // symporter activity // inferred from electronic annotation /// 0015321 // sodium-dependent phosphate transmembrane transporter activity // inferred from electronic annotation /// 0015321 // sodium-dependent phosphate transmembrane transporter activity // inferred from mutant phenotype /// 0015321 // sodium-dependent phosphate transmembrane transporter activity // not recorded 1370746_at D10770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D10770.1 /DB_XREF=gi:220703 /FEA=FLmRNA /CNT=1 /TID=Affx.1.61 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rat mRNA for beta isoform of catalytic subunit of cAMP-dependent protein kinase, complete cds. /PROD=cAMP-dependent protein kinase catalyticsubunit-beta /FL=gb:D10770.1 D10770 protein kinase, cAMP dependent, catalytic, beta Prkacb 293508 NM_001077645 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0007243 // intracellular protein kinase cascade // not recorded /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0016310 // phosphorylation // not recorded /// 0034199 // activation of protein kinase A activity // not recorded /// 0051447 // negative regulation of meiotic cell cycle // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005952 // cAMP-dependent protein kinase complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004691 // cAMP-dependent protein kinase activity // inferred from direct assay /// 0004691 // cAMP-dependent protein kinase activity // not recorded /// 0004691 // cAMP-dependent protein kinase activity // inferred from sequence or structural similarity /// 0004691 // cAMP-dependent protein kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0034237 // protein kinase A regulatory subunit binding // inferred by curator 1370747_at D14839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D14839.1 /DB_XREF=gi:391852 /FEA=FLmRNA /CNT=1 /TID=Rn.25174.1 /TIER=FL /STK=1 /UG=Rn.25174 /LL=25444 /UG_GENE=Fgf9 /DEF=Rat mRNA for FGF-9, complete cds. /PROD=rat FGF-9 /FL=gb:D14839.1 D14839 fibroblast growth factor 9 Fgf9 25444 NM_012952 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // not recorded /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006606 // protein import into nucleus // not recorded /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from direct assay /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030238 // male sex determination // inferred from electronic annotation /// 0030238 // male sex determination // not recorded /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from genetic interaction /// 0045880 // positive regulation of smoothened signaling pathway // inferred from electronic annotation /// 0045880 // positive regulation of smoothened signaling pathway // not recorded /// 0048505 // regulation of timing of cell differentiation // inferred from electronic annotation /// 0048505 // regulation of timing of cell differentiation // not recorded /// 0048566 // embryonic digestive tract development // inferred from electronic annotation /// 0048566 // embryonic digestive tract development // not recorded /// 0048706 // embryonic skeletal system development // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060045 // positive regulation of cardiac muscle cell proliferation // not recorded /// 0060484 // lung-associated mesenchyme development // inferred from electronic annotation /// 0060484 // lung-associated mesenchyme development // not recorded /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005604 // basement membrane // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from direct assay 0005104 // fibroblast growth factor receptor binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation 1370748_at AF093625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF093625.1 /DB_XREF=gi:3978494 /FEA=FLmRNA /CNT=1 /TID=Rn.30065.1 /TIER=FL /STK=1 /UG=Rn.30065 /DEF=Rattus norvegicus uterine luminal fluid ULF-250 protein mRNA, complete cds. /PROD=ULF-250 protein /FL=gb:AF093625.1 AF093625 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1370749_at U36786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U36786.1 /DB_XREF=gi:1039471 /FEA=FLmRNA /CNT=1 /TID=Rn.10227.1 /TIER=FL /STK=1 /UG=Rn.10227 /DEF=Rattus norvegicus putative pheromone receptor VN7 mRNA, complete cds. /PROD=pheromone receptor VN7 /FL=gb:U36786.1 U36786 vomeronasal 1 receptor, 101 Vom1r101 286892 NM_173112 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0019236 // response to pheromone // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0016503 // pheromone receptor activity // inferred from electronic annotation 1370750_a_at U14010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U14010.1 /DB_XREF=gi:555888 /FEA=FLmRNA /CNT=1 /TID=Rn.9758.2 /TIER=FL /STK=1 /UG=Rn.9758 /LL=25663 /UG_GENE=Il1r1 /DEF=Rattus norvegicus soluble IL-1 receptor type I mRNA, complete cds. /PROD=soluble IL-1 receptor type I /FL=gb:U14010.1 U14010 interleukin 1 receptor, type I Il1r1 25663 NM_013123 0007165 // signal transduction // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0030728 // ovulation // inferred from expression pattern /// 0045087 // innate immune response // inferred from electronic annotation /// 0070498 // interleukin-1-mediated signaling pathway // not recorded /// 0070498 // interleukin-1-mediated signaling pathway // inferred from electronic annotation /// 0070555 // response to interleukin-1 // inferred from expression pattern /// 0070555 // response to interleukin-1 // not recorded /// 0070555 // response to interleukin-1 // inferred from electronic annotation /// 0071731 // response to nitric oxide // inferred from expression pattern 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031224 // intrinsic to membrane // inferred from electronic annotation 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004908 // interleukin-1 receptor activity // not recorded /// 0004908 // interleukin-1 receptor activity // inferred from electronic annotation /// 0004909 // interleukin-1, Type I, activating receptor activity // inferred from electronic annotation /// 0005161 // platelet-derived growth factor receptor binding // not recorded /// 0005161 // platelet-derived growth factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1370751_at U77931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U77931.1 /DB_XREF=gi:4165021 /FEA=FLmRNA /CNT=1 /TID=Affx.1.62 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus rRNA promoter binding protein mRNA, complete cds. /PROD=rRNA promoter binding protein /FL=gb:U77931.1 U77931 rRNA promoter binding protein LOC257642 257642 NM_147136 0008283 // cell proliferation // inferred from direct assay /// 0009303 // rRNA transcription // inferred from direct assay 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0008134 // transcription factor binding // inferred from direct assay 1370752_a_at AY009504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY009504.1 /DB_XREF=gi:11528485 /GEN=p53 /FEA=FLmRNA /CNT=1 /TID=Rn.54443.3 /TIER=FL /STK=1 /UG=Rn.54443 /LL=24842 /DEF=Rattus norvegicus mutant p53 (p53) mRNA, complete cds. /PROD=mutant p53 /FL=gb:AY009504.1 AY009504 tumor protein p53 Tp53 24842 NM_030989 0000060 // protein import into nucleus, translocation // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0001756 // somitogenesis // not recorded /// 0001836 // release of cytochrome c from mitochondria // not recorded /// 0002309 // T cell proliferation involved in immune response // not recorded /// 0002326 // B cell lineage commitment // not recorded /// 0002347 // response to tumor cell // inferred from electronic annotation /// 0002360 // T cell lineage commitment // not recorded /// 0002687 // positive regulation of leukocyte migration // inferred from mutant phenotype /// 0006289 // nucleotide-excision repair // not recorded /// 0006289 // nucleotide-excision repair // inferred from sequence or structural similarity /// 0006302 // double-strand break repair // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006461 // protein complex assembly // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from sequence or structural similarity /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // not recorded /// 0006978 // DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator // not recorded /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0006983 // ER overload response // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0007275 // multicellular organismal development // not recorded /// 0007275 // multicellular organismal development // inferred from sequence or structural similarity /// 0007369 // gastrulation // not recorded /// 0007406 // negative regulation of neuroblast proliferation // not recorded /// 0007417 // central nervous system development // not recorded /// 0007568 // aging // inferred from expression pattern /// 0007569 // cell aging // not recorded /// 0007569 // cell aging // inferred from sequence or structural similarity /// 0008104 // protein localization // not recorded /// 0008156 // negative regulation of DNA replication // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008635 // activation of caspase activity by cytochrome c // not recorded /// 0008635 // activation of caspase activity by cytochrome c // inferred from sequence or structural similarity /// 0009303 // rRNA transcription // not recorded /// 0009411 // response to UV // inferred from expression pattern /// 0009411 // response to UV // not recorded /// 0009651 // response to salt stress // not recorded /// 0009792 // embryo development ending in birth or egg hatching // not recorded /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010038 // response to metal ion // inferred from expression pattern /// 0010165 // response to X-ray // inferred from expression pattern /// 0010165 // response to X-ray // not recorded /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010332 // response to gamma radiation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from direct assay /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0030308 // negative regulation of cell growth // inferred from sequence or structural similarity /// 0030308 // negative regulation of cell growth // traceable author statement /// 0030330 // DNA damage response, signal transduction by p53 class mediator // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0031000 // response to caffeine // inferred from expression pattern /// 0031065 // positive regulation of histone deacetylation // not recorded /// 0031571 // mitotic cell cycle G1/S DNA damage checkpoint // not recorded /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0033077 // T cell differentiation in thymus // not recorded /// 0033552 // response to vitamin B3 // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0034644 // cellular response to UV // not recorded /// 0035264 // multicellular organism growth // not recorded /// 0042060 // wound healing // inferred from expression pattern /// 0042127 // regulation of cell proliferation // not recorded /// 0042149 // cellular response to glucose starvation // not recorded /// 0042221 // response to chemical stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // not recorded /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043523 // regulation of neuron apoptosis // not recorded /// 0043525 // positive regulation of neuron apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045787 // positive regulation of cell cycle // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046902 // regulation of mitochondrial membrane permeability // not recorded /// 0048147 // negative regulation of fibroblast proliferation // not recorded /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0050790 // regulation of catalytic activity // not recorded /// 0051276 // chromosome organization // not recorded /// 0051453 // regulation of intracellular pH // inferred from mutant phenotype /// 0051726 // regulation of cell cycle // not recorded /// 0055093 // response to hyperoxia // inferred from expression pattern 0000785 // chromatin // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // not recorded /// 0005657 // replication fork // not recorded /// 0005667 // transcription factor complex // inferred from direct assay /// 0005669 // transcription factor TFIID complex // not recorded /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from mutant phenotype /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0016363 // nuclear matrix // not recorded /// 0016604 // nuclear body // not recorded /// 0016605 // PML body // not recorded /// 0043234 // protein complex // not recorded 0000739 // DNA strand annealing activity // not recorded /// 0000739 // DNA strand annealing activity // inferred from sequence or structural similarity /// 0002020 // protease binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003702 // RNA polymerase II transcription factor activity // traceable author statement /// 0005507 // copper ion binding // not recorded /// 0005507 // copper ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // inferred from direct assay /// 0019899 // enzyme binding // not recorded /// 0019901 // protein kinase binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0035033 // histone deacetylase regulator activity // not recorded /// 0035035 // histone acetyltransferase binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0047485 // protein N-terminus binding // not recorded /// 0051087 // chaperone binding // not recorded /// 0051721 // protein phosphatase 2A binding // not recorded 1370753_at M64376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M64376.1 /DB_XREF=gi:205813 /FEA=FLmRNA /CNT=1 /TID=Rn.44380.1 /TIER=FL /STK=1 /UG=Rn.44380 /DEF=Rat olfactory protein mRNA, complete cds. /PROD=olfactory protein /FL=gb:M64376.1 M64376 olfactory receptor 1078 Olr1078 299593 NM_207597 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from reviewed computational analysis /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050911 // detection of chemical stimulus involved in sensory perception of smell // inferred from reviewed computational analysis 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from reviewed computational analysis /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from reviewed computational analysis /// 0004984 // olfactory receptor activity // inferred from electronic annotation 1370754_at AF240765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF240765.1 /DB_XREF=gi:7288869 /FEA=FLmRNA /CNT=1 /TID=Rn.48792.1 /TIER=FL /STK=1 /UG=Rn.48792 /DEF=Rattus norvegicus taste receptor rT2R2 mRNA, complete cds. /PROD=taste receptor rT2R2 /FL=gb:AF240765.1 AF240765 taste receptor, type 2, member 123 Tas2r123 287003 NM_173336 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0008527 // taste receptor activity // traceable author statement 1370755_at AF361341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF361341.1 /DB_XREF=gi:17974515 /GEN=Cacng4 /FEA=FLmRNA /CNT=1 /TID=Rn.81220.1 /TIER=FL /STK=1 /UG=Rn.81220 /DEF=Rattus norvegicus voltage-dependent calcium channel gamma-4 subunit (Cacng4) mRNA, complete cds. /PROD=voltage-dependent calcium channel gamma-4subunit /FL=gb:AF361341.1 AF361341 calcium channel, voltage-dependent, gamma subunit 4 Cacng4 140725 NM_080692 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0019226 // transmission of nerve impulse // inferred from electronic annotation /// 0019226 // transmission of nerve impulse // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation 1370756_at M64381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M64381.1 /DB_XREF=gi:205823 /FEA=FLmRNA /CNT=1 /TID=Rn.44383.1 /TIER=FL /STK=1 /UG=Rn.44383 /DEF=Rat olfactory protein mRNA, complete cds. /PROD=olfactory protein /FL=gb:M64381.1 M64381 olfactory receptor 1082 Olr1082 287002 NM_173335 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from reviewed computational analysis /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007608 // sensory perception of smell // inferred from sequence or structural similarity /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050911 // detection of chemical stimulus involved in sensory perception of smell // inferred from reviewed computational analysis 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from reviewed computational analysis /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from reviewed computational analysis /// 0004984 // olfactory receptor activity // inferred from electronic annotation /// 0005549 // odorant binding // inferred from sequence or structural similarity 1370757_at AF361340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF361340.1 /DB_XREF=gi:17974513 /GEN=Cacng3 /FEA=FLmRNA /CNT=1 /TID=Rn.81221.1 /TIER=FL /STK=1 /UG=Rn.81221 /DEF=Rattus norvegicus voltage-dependent calcium channel gamma-3 subunit (Cacng3) mRNA, complete cds. /PROD=voltage-dependent calcium channel gamma-3subunit /FL=gb:AF361340.1 AF361340 calcium channel, voltage-dependent, gamma subunit 3 Cacng3 140724 NM_080691 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation 1370758_at M83679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M83679.1 /DB_XREF=gi:206536 /GEN=RAB15 /FEA=FLmRNA /CNT=1 /TID=Affx.1.63 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Sprague-Dawley (clone LRB9) RAB15 mRNA, complete cds. /PROD=RAB15 /FL=gb:M83679.1 M83679 RAB15, member RAS oncogene family Rab15 299156 NM_198749 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation 1370759_at U39571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U39571.1 /DB_XREF=gi:4096759 /FEA=FLmRNA /CNT=1 /TID=Affx.1.64 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus phosphatidylinositol 4-kinase, complete cds. /PROD=phosphatidylinositol 4-kinase /FL=gb:U39571.1 U39571 0046854 // phosphoinositide phosphorylation // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation 0004428 // inositol or phosphatidylinositol kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1370760_a_at M38350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M38350.1 /DB_XREF=gi:204231 /FEA=FLmRNA /CNT=1 /TID=Rn.10370.2 /TIER=FL /STK=1 /UG=Rn.10370 /LL=24379 /UG_GENE=Gad1 /DEF=Rat embryonic glutamate decarboxylase mRNA, complete cds. /PROD=glutamate decarboxylase /FL=gb:M38350.1 M38350 glutamate decarboxylase 1 Gad1 24379 NM_017007 0019752 // carboxylic acid metabolic process // inferred from electronic annotation /// 0042136 // neurotransmitter biosynthetic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005622 // intracellular // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004351 // glutamate decarboxylase activity // inferred from direct assay /// 0004351 // glutamate decarboxylase activity // not recorded /// 0004351 // glutamate decarboxylase activity // inferred from sequence or structural similarity /// 0004351 // glutamate decarboxylase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1370761_at M64377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M64377.1 /DB_XREF=gi:205815 /FEA=FLmRNA /CNT=1 /TID=Rn.44381.1 /TIER=FL /STK=1 /UG=Rn.44381 /DEF=Rat olfactory protein mRNA, complete cds. /PROD=olfactory protein /FL=gb:M64377.1 M64377 olfactory receptor 1361 Olr1361 287000 NM_173333 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from reviewed computational analysis /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007608 // sensory perception of smell // inferred from sequence or structural similarity /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050911 // detection of chemical stimulus involved in sensory perception of smell // inferred from reviewed computational analysis 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from reviewed computational analysis /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from sequence or structural similarity /// 0004984 // olfactory receptor activity // inferred from reviewed computational analysis /// 0004984 // olfactory receptor activity // inferred from electronic annotation 1370762_at M64378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M64378.1 /DB_XREF=gi:205817 /FEA=FLmRNA /CNT=1 /TID=Rn.44382.1 /TIER=FL /STK=1 /UG=Rn.44382 /DEF=Rat olfactory protein mRNA, complete cds. /PROD=olfactory protein /FL=gb:M64378.1 M64378 olfactory receptor 287 Olr287 287001 NM_173334 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from electronic annotation /// 0005549 // odorant binding // inferred from sequence or structural similarity 1370763_at M64385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M64385.1 /DB_XREF=gi:205831 /FEA=FLmRNA /CNT=1 /TID=Rn.44385.5 /TIER=FL /STK=1 /UG=Rn.44385 /LL=65140 /UG_GENE=Olfr41 /DEF=Rat olfactory protein mRNA, complete cds. /PROD=olfactory protein /FL=gb:M64385.1 M64385 olfactory receptor 1496 Olr1496 404968 NM_001000716 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from reviewed computational analysis /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050911 // detection of chemical stimulus involved in sensory perception of smell // inferred from reviewed computational analysis 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from reviewed computational analysis /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from reviewed computational analysis /// 0004984 // olfactory receptor activity // inferred from electronic annotation 1370764_a_at M35965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M35965.1 /DB_XREF=gi:206813 /FEA=FLmRNA /CNT=1 /TID=Rn.10429.2 /TIER=FL /STK=1 /UG=Rn.10429 /LL=24826 /UG_GENE=Tg /UG_TITLE=Thyroglobulin /DEF=Rat thyroglobulin (rTg-2) mRNA, complete cds. /FL=gb:M35965.1 M35965 thyroglobulin Tg 24826 NM_030988 0006590 // thyroid hormone generation // inferred from direct assay /// 0006590 // thyroid hormone generation // traceable author statement /// 0009268 // response to pH // inferred from direct assay /// 0015705 // iodide transport // inferred from electronic annotation /// 0015705 // iodide transport // not recorded /// 0031641 // regulation of myelination // inferred from electronic annotation /// 0031641 // regulation of myelination // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0042403 // thyroid hormone metabolic process // not recorded /// 0042403 // thyroid hormone metabolic process // inferred from electronic annotation /// 0042446 // hormone biosynthetic process // inferred from electronic annotation /// 0045056 // transcytosis // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005179 // hormone activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction /// 0051087 // chaperone binding // inferred from physical interaction 1370765_at U57063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U57063.1 /DB_XREF=gi:1470063 /GEN=RNKP-7 /FEA=FLmRNA /CNT=1 /TID=Rn.10534.1 /TIER=FL /STK=1 /UG=Rn.10534 /DEF=Rattus norvegicus natural killer cell protease 7 (RNKP-7) mRNA, complete cds. /PROD=natural killer cell protease 7 /FL=gb:U57063.1 U57063 granzyme F Gzmf 266704 NM_153466 0006508 // proteolysis // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1370766_at AF035822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF035822.1 /DB_XREF=gi:3851468 /GEN=GS32 /FEA=FLmRNA /CNT=1 /TID=Rn.82714.1 /TIER=FL /STK=1 /UG=Rn.82714 /LL=171448 /DEF=Rattus norvegicus GS32 (GS32) mRNA, complete cds. /PROD=GS32 /FL=gb:AF035822.1 AF035822 synaptosomal-associated protein 29 Snap29 116500 NM_053810 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 1370767_at M20183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M20183.1 /DB_XREF=gi:203711 /FEA=FLmRNA /CNT=1 /TID=Rn.10885.1 /TIER=FL /STK=1 /UG=Rn.10885 /UG_TITLE=Rat cytochrome c oxidase subunit VIc (COX-VIc-1) mRNA, complete cds /DEF=Rat cytochrome c oxidase subunit VIc (COX-VIc-1) mRNA, complete cds. /FL=gb:M20183.1 M20183 cytochrome c oxidase subunit VIc-1 Cox6c1 286962 NM_173303 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation 1370768_at AF012282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF012282.1 /DB_XREF=gi:3366639 /GEN=rs14 /FEA=FLmRNA /CNT=1 /TID=Rn.29990.1 /TIER=FL /STK=1 /UG=Rn.29990 /DEF=Rattus norvegicus peptide HP (rs14) mRNA, complete cds. /PROD=peptide HP /FL=gb:AF012282.1 AF012282 peptide HP (rs14) LOC286992 286992 NM_173326 1370769_a_at AB023133 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB023133.1 /DB_XREF=gi:5360714 /FEA=FLmRNA /CNT=1 /TID=Rn.42901.2 /TIER=FL /STK=1 /UG=Rn.42901 /LL=64545 /UG_GENE=Ailim /DEF=Rattus norvegicus mRNA for activation-inducible lymphocyte immunomediatory molecule AILIM, complete cds. /PROD=activation-inducible lymphocyte immunomediatorymolecule AILIM /FL=gb:AB023133.1 AB023133 inducible T-cell co-stimulator Icos 64545 NM_022610 0002517 // T cell tolerance induction // inferred from mutant phenotype /// 0016337 // cell-cell adhesion // inferred from direct assay /// 0031295 // T cell costimulation // inferred from direct assay 0005887 // integral to plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1370770_s_at AF071205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF071205.1 /DB_XREF=gi:4106385 /FEA=FLmRNA /CNT=1 /TID=Rn.55171.1 /TIER=FL /STK=1 /UG=Rn.55171 /LL=60428 /UG_GENE=LOC60428 /DEF=Rattus norvegicus stem cell factor KL-2 precursor, mRNA, complete cds. /PROD=stem cell factor KL-2 precursor /FL=gb:AF071205.1 AF071205 KIT ligand Kitlg 60427 NM_021843 /// NM_021844 0001541 // ovarian follicle development // inferred from direct assay /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0002763 // positive regulation of myeloid leukocyte differentiation // inferred from electronic annotation /// 0002763 // positive regulation of myeloid leukocyte differentiation // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0033026 // negative regulation of mast cell apoptosis // inferred from electronic annotation /// 0033026 // negative regulation of mast cell apoptosis // not recorded /// 0035234 // germ cell programmed cell death // inferred from electronic annotation /// 0035234 // germ cell programmed cell death // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // not recorded /// 0045636 // positive regulation of melanocyte differentiation // inferred from electronic annotation /// 0045636 // positive regulation of melanocyte differentiation // not recorded /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0070668 // positive regulation of mast cell proliferation // inferred from electronic annotation /// 0070668 // positive regulation of mast cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005173 // stem cell factor receptor binding // inferred from electronic annotation /// 0005173 // stem cell factor receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1370771_at AF361345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF361345.1 /DB_XREF=gi:17974523 /GEN=Cacng7 /FEA=FLmRNA /CNT=1 /TID=Rn.81218.1 /TIER=FL /STK=1 /UG=Rn.81218 /DEF=Rattus norvegicus voltage-dependent calcium channel gamma-7 subunit (Cacng7) mRNA, complete cds. /PROD=voltage-dependent calcium channel gamma-7subunit /FL=gb:AF361345.1 AF361345 calcium channel, voltage-dependent, gamma subunit 7 Cacng7 140728 NM_080695 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation 1370772_a_at AF176534 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF176534.1 /DB_XREF=gi:5734362 /FEA=FLmRNA /CNT=1 /TID=Rn.42931.1 /TIER=FL /STK=1 /UG=Rn.42931 /LL=29199 /UG_GENE=Hfe /DEF=Rattus norvegicus hemochromatosis gene product HFE splice variant delE2 mRNA, complete cds. /PROD=hemochromatosis gene product HFE splice variantdelE2 /FL=gb:AF176534.1 AF176534 hemochromatosis Hfe 29199 NM_001173434 /// NM_001173435 /// NM_053301 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from expression pattern /// 0010106 // cellular response to iron ion starvation // inferred from expression pattern /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0042446 // hormone biosynthetic process // inferred from electronic annotation /// 0042446 // hormone biosynthetic process // not recorded /// 0055072 // iron ion homeostasis // not recorded /// 0055072 // iron ion homeostasis // inferred from electronic annotation /// 0060586 // multicellular organismal iron ion homeostasis // inferred from electronic annotation /// 0060586 // multicellular organismal iron ion homeostasis // not recorded 0005769 // early endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0031528 // microvillus membrane // inferred from direct assay /// 0042612 // MHC class I protein complex // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from direct assay /// 0045177 // apical part of cell // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045178 // basal part of cell // inferred from electronic annotation /// 0045178 // basal part of cell // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0055037 // recycling endosome // inferred from electronic annotation /// 0055037 // recycling endosome // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370773_a_at AF269283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF269283.1 /DB_XREF=gi:8926236 /FEA=FLmRNA /CNT=1 /TID=Rn.54469.1 /TIER=FL /STK=1 /UG=Rn.54469 /DEF=Rattus norvegicus potassium channel auxiliary subunit KCHIP2a mRNA, complete cds. /PROD=potassium channel auxiliary subunit KCHIP2a /FL=gb:AF269283.1 AF269283 Kv channel-interacting protein 2 Kcnip2 56817 NM_001033961 /// NM_020094 /// NM_020095 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0045163 // clustering of voltage-gated potassium channels // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0047485 // protein N-terminus binding // not recorded 1370774_at AF412817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF412817.1 /DB_XREF=gi:15724385 /FEA=FLmRNA /CNT=1 /TID=Rn.81019.1 /TIER=FL /STK=1 /UG=Rn.81019 /DEF=Rattus norvegicus DCM5 protein mRNA, complete cds. /PROD=DCM5 protein /FL=gb:AF412817.1 AF412817 Dcm5 protein Dcm5 257653 NR_033150 1370775_a_at M11597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M11597.1 /DB_XREF=gi:203226 /FEA=FLmRNA /CNT=1 /TID=Rn.48810.2 /TIER=FL /STK=1 /UG=Rn.48810 /LL=24241 /UG_GENE=Calca /UG_TITLE=Calcitonincalcitonin-related polypeptide, alpha /DEF=Rat alpha-type calcitonin gene-related peptide mRNA, complete cds. /FL=gb:M11597.1 M11597 calcitonin-related polypeptide alpha Calca 24241 NM_001033955 /// NM_001033956 /// NM_017338 0001935 // endothelial cell proliferation // not recorded /// 0001944 // vasculature development // not recorded /// 0001976 // neurological system process involved in regulation of systemic arterial blood pressure // not recorded /// 0001984 // vasodilation of artery involved in baroreceptor response to increased systemic arterial blood pressure // inferred from electronic annotation /// 0001984 // vasodilation of artery involved in baroreceptor response to increased systemic arterial blood pressure // not recorded /// 0002027 // regulation of heart rate // inferred from electronic annotation /// 0002027 // regulation of heart rate // not recorded /// 0002548 // monocyte chemotaxis // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006954 // inflammatory response // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007159 // leukocyte cell-cell adhesion // not recorded /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007190 // activation of adenylate cyclase activity // not recorded /// 0007190 // activation of adenylate cyclase activity // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007528 // neuromuscular junction development // not recorded /// 0007566 // embryo implantation // not recorded /// 0007568 // aging // inferred from expression pattern /// 0007631 // feeding behavior // inferred from electronic annotation /// 0007631 // feeding behavior // not recorded /// 0008016 // regulation of heart contraction // inferred from direct assay /// 0008217 // regulation of blood pressure // not recorded /// 0009408 // response to heat // inferred from electronic annotation /// 0009408 // response to heat // not recorded /// 0010523 // negative regulation of calcium ion transport into cytosol // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030279 // negative regulation of ossification // inferred from electronic annotation /// 0030279 // negative regulation of ossification // not recorded /// 0031645 // negative regulation of neurological system process // inferred from electronic annotation /// 0031645 // negative regulation of neurological system process // not recorded /// 0032147 // activation of protein kinase activity // not recorded /// 0032730 // positive regulation of interleukin-1 alpha production // not recorded /// 0032757 // positive regulation of interleukin-8 production // not recorded /// 0042311 // vasodilation // inferred from direct assay /// 0043542 // endothelial cell migration // not recorded /// 0045651 // positive regulation of macrophage differentiation // not recorded /// 0045671 // negative regulation of osteoclast differentiation // not recorded /// 0045762 // positive regulation of adenylate cyclase activity // not recorded /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0045776 // negative regulation of blood pressure // not recorded /// 0045776 // negative regulation of blood pressure // inferred from electronic annotation /// 0045778 // positive regulation of ossification // inferred from electronic annotation /// 0045778 // positive regulation of ossification // not recorded /// 0045779 // negative regulation of bone resorption // not recorded /// 0045785 // positive regulation of cell adhesion // not recorded /// 0045909 // positive regulation of vasodilation // not recorded /// 0045986 // negative regulation of smooth muscle contraction // inferred from mutant phenotype /// 0045986 // negative regulation of smooth muscle contraction // not recorded /// 0045986 // negative regulation of smooth muscle contraction // inferred from electronic annotation /// 0048265 // response to pain // inferred from electronic annotation /// 0048265 // response to pain // not recorded /// 0050727 // regulation of inflammatory response // inferred from mutant phenotype /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // inferred from electronic annotation /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // not recorded /// 0051480 // cytosolic calcium ion homeostasis // not recorded /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043195 // terminal button // inferred from electronic annotation /// 0043195 // terminal button // not recorded 0005102 // receptor binding // not recorded /// 0005179 // hormone activity // inferred from electronic annotation /// 0005184 // neuropeptide hormone activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0031716 // calcitonin receptor binding // inferred from mutant phenotype /// 0031716 // calcitonin receptor binding // not recorded /// 0031716 // calcitonin receptor binding // traceable author statement /// 0031716 // calcitonin receptor binding // inferred from electronic annotation 1370776_a_at AF281305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF281305.1 /DB_XREF=gi:9971950 /FEA=FLmRNA /CNT=1 /TID=Rn.43365.2 /TIER=FL /STK=1 /UG=Rn.43365 /LL=116491 /UG_GENE=Kcnk6 /DEF=Rattus norvegicus 2P domain K+ channel TWIK-2 mRNA, complete cds, alternatively spliced. /PROD=2P domain K+ channel TWIK-2 /FL=gb:AF281305.1 AF281305 potassium channel, subfamily K, member 6 Kcnk6 116491 NM_053806 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from direct assay /// 0005267 // potassium channel activity // inferred from electronic annotation 1370777_at D88586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D88586.1 /DB_XREF=gi:1669582 /FEA=FLmRNA /CNT=1 /TID=Rn.10626.1 /TIER=FL /STK=1 /UG=Rn.10626 /DEF=Rat mRNA for eosinophil cationic protein, complete cds. /PROD=eosinophil cationic protein /FL=gb:D88586.1 D88586 eosinophil-associated, ribonuclease A family, member 11 Ear11 192264 NM_138902 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004522 // pancreatic ribonuclease activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1370778_at AB039828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB039828.1 /DB_XREF=gi:8307695 /FEA=FLmRNA /CNT=1 /TID=Rn.53983.2 /TIER=FL /STK=1 /UG=Rn.53983 /DEF=Rattus norvegicus mRNA for alpha-2u globulin, complete cds, clone:PGCL7. /PROD=alpha-2u globulin /FL=gb:AB039828.1 AB039828 similar to major urinary protein 5 /// major urinary protein 5 LOC685577 /// Mup5 298107 /// 685577 NM_203325 /// XR_006055 0006810 // transport // inferred from electronic annotation 0004866 // endopeptidase inhibitor activity // non-traceable author statement /// 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005550 // pheromone binding // inferred from electronic annotation 1370779_x_at AB039828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB039828.1 /DB_XREF=gi:8307695 /FEA=FLmRNA /CNT=1 /TID=Rn.53983.2 /TIER=FL /STK=1 /UG=Rn.53983 /DEF=Rattus norvegicus mRNA for alpha-2u globulin, complete cds, clone:PGCL7. /PROD=alpha-2u globulin /FL=gb:AB039828.1 AB039828 major urinary protein 5 Mup5 298107 NM_203325 0006810 // transport // inferred from electronic annotation 0004866 // endopeptidase inhibitor activity // non-traceable author statement /// 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005550 // pheromone binding // inferred from electronic annotation 1370780_at AF254800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF254800.1 /DB_XREF=gi:7689358 /FEA=FLmRNA /CNT=1 /TID=Rn.53989.1 /TIER=FL /STK=1 /UG=Rn.53989 /DEF=Rattus norvegicus GTP-binding protein Rab0 mRNA, complete cds. /PROD=GTP-binding protein Rab0 /FL=gb:AF254800.1 AF254800 RAB31, member RAS oncogene family Rab31 246324 NM_145094 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0048193 // Golgi vesicle transport // inferred from mutant phenotype 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1370781_a_at AY082657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY082657.1 /DB_XREF=gi:19743735 /FEA=FLmRNA /CNT=1 /TID=Rn.82701.1 /TIER=FL /STK=1 /UG=Rn.82701 /DEF=Rattus norvegicus potassium channel auxiliary subunit KChIP1a mRNA, complete cds. /PROD=potassium channel auxiliary subunit KChIP1a /FL=gb:AY082657.1 AY082657 Kv channel-interacting protein 1 Kcnip1 65023 NM_022929 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0045760 // positive regulation of action potential // inferred from direct assay 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0015459 // potassium channel regulator activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from physical interaction 1370782_a_at L17317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L17317.1 /DB_XREF=gi:310197 /GEN=PRPG1 /FEA=FLmRNA /CNT=1 /TID=Rn.20733.2 /TIER=FL /STK=1 /UG=Rn.20733 /DEF=Rattus norvegicus proline-rich proteoglycan (PRPG1) mRNA, complete cds. /PROD=proline-rich proteoglycan /FL=gb:L17317.1 L17317 proline-rich proteoglycan 1 Prpg1 257652 NM_172064 0005576 // extracellular region // inferred from electronic annotation 1370783_a_at M22924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M22924.1 /DB_XREF=gi:204118 /FEA=FLmRNA /CNT=1 /TID=Rn.10922.2 /TIER=FL /STK=1 /UG=Rn.10922 /LL=25316 /UG_GENE=Fcer1b /UG_TITLE=membrane-spanning 4-domains, subfamily A, member 1 /DEF=Rat IgE Fc receptor deleted beta-subunit mRNA, complete cds. /FL=gb:M22924.1 M22924 membrane-spanning 4-domains, subfamily A, member 2 (Fc fragment of IgE, high affinity I, receptor for; beta polypeptide) Ms4a2 25316 NM_012845 0006954 // inflammatory response // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007202 // activation of phospholipase C activity // inferred from direct assay /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0043306 // positive regulation of mast cell degranulation // inferred from mutant phenotype /// 0050663 // cytokine secretion // inferred from genetic interaction /// 0051279 // regulation of release of sequestered calcium ion into cytosol // inferred from genetic interaction 0005768 // endosome // inferred from direct assay /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032998 // Fc-epsilon receptor I complex // inferred from electronic annotation /// 0032998 // Fc-epsilon receptor I complex // not recorded /// 0045121 // membrane raft // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0019767 // IgE receptor activity // inferred from direct assay /// 0019863 // IgE binding // not recorded /// 0019863 // IgE binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0042169 // SH2 domain binding // inferred from direct assay /// 0051219 // phosphoprotein binding // inferred from physical interaction 1370784_a_at AF361344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF361344.1 /DB_XREF=gi:17974521 /GEN=Cacng6 /FEA=FLmRNA /CNT=1 /TID=Rn.50025.1 /TIER=FL /STK=1 /UG=Rn.50025 /DEF=Rattus norvegicus voltage-dependent calcium channel gamma-6 subunit short isoform (Cacng6) mRNA, complete cds. /PROD=voltage-dependent calcium channel gamma-6subunit short isoform /FL=gb:AF361344.1 AF361344 calcium channel, voltage-dependent, gamma subunit 6 Cacng6 140727 NM_080694 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation 1370785_s_at D63411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D63411.1 /DB_XREF=gi:1838934 /FEA=FLmRNA /CNT=1 /TID=Affx.1.66 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rat mRNA for mitochondrial precursor receptor, complete cds. /PROD=mitochondrial precursor receptor /FL=gb:D63411.1 D63411 translocase of outer mitochondrial membrane 20 homolog (yeast) Tomm20 266601 NM_152935 0006605 // protein targeting // inferred from electronic annotation /// 0006626 // protein targeting to mitochondrion // not recorded /// 0006626 // protein targeting to mitochondrion // inferred from sequence or structural similarity /// 0006626 // protein targeting to mitochondrion // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005740 // mitochondrial envelope // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005742 // mitochondrial outer membrane translocase complex // non-traceable author statement /// 0005742 // mitochondrial outer membrane translocase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // not recorded /// 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // traceable author statement /// 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from direct assay /// 0051082 // unfolded protein binding // not recorded /// 0051082 // unfolded protein binding // inferred from electronic annotation 1370786_at AF442205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF442205.1 /DB_XREF=gi:17066669 /FEA=FLmRNA /CNT=1 /TID=Rn.48222.1 /TIER=FL /STK=1 /UG=Rn.48222 /DEF=Rattus norvegicus cystatin SC mRNA, complete cds. /PROD=cystatin SC /FL=gb:AF442205.1 AF442205 cystatin SC LOC257643 257643 NM_147137 0005576 // extracellular region // inferred from electronic annotation 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1370787_at AF065433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF065433.1 /DB_XREF=gi:3228569 /FEA=FLmRNA /CNT=1 /TID=Rn.82709.1 /TIER=FL /STK=1 /UG=Rn.82709 /LL=171346 /UG_GENE=Bcl2l11 /DEF=Rattus norvegicus Bcl-2 related ovarian death gene product BOD-L mRNA, complete cds. /PROD=Bcl-2 related ovarian death gene product BOD-L /FL=gb:AF065433.1 AF065433 BCL2-like 11 (apoptosis facilitator) Bcl2l11 64547 NM_022612 /// NM_171988 /// NM_171989 0001701 // in utero embryonic development // not recorded /// 0001776 // leukocyte homeostasis // not recorded /// 0001782 // B cell homeostasis // not recorded /// 0001783 // B cell apoptosis // not recorded /// 0001822 // kidney development // not recorded /// 0002260 // lymphocyte homeostasis // not recorded /// 0002262 // myeloid cell homeostasis // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from direct assay /// 0006917 // induction of apoptosis // traceable author statement /// 0007160 // cell-matrix adhesion // not recorded /// 0007283 // spermatogenesis // not recorded /// 0008584 // male gonad development // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0009791 // post-embryonic development // not recorded /// 0030879 // mammary gland development // not recorded /// 0035148 // tube formation // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0043029 // T cell homeostasis // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043583 // ear development // not recorded /// 0046620 // regulation of organ growth // not recorded /// 0048066 // developmental pigmentation // not recorded /// 0048070 // regulation of developmental pigmentation // not recorded /// 0048536 // spleen development // not recorded /// 0048538 // thymus development // not recorded /// 0048563 // post-embryonic organ morphogenesis // not recorded 0000300 // peripheral to membrane of membrane fraction // not recorded /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from direct assay 1370788_at AB079673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB079673.1 /DB_XREF=gi:18652946 /GEN=FGF4 /FEA=FLmRNA /CNT=1 /TID=Rn.81223.1 /TIER=FL /STK=1 /UG=Rn.81223 /DEF=Rattus norvegicus FGF4 mRNA for fibroblast growth factor, complete cds. /PROD=fibroblast growth factor /FL=gb:AB079673.1 AB079673 fibroblast growth factor 4 Fgf4 116499 NM_053809 0001502 // cartilage condensation // not recorded /// 0001502 // cartilage condensation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0010463 // mesenchymal cell proliferation // not recorded /// 0010463 // mesenchymal cell proliferation // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0019827 // stem cell maintenance // not recorded /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0060363 // cranial suture morphogenesis // not recorded /// 0060363 // cranial suture morphogenesis // inferred from electronic annotation /// 0060591 // chondroblast differentiation // not recorded /// 0060591 // chondroblast differentiation // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0005625 // soluble fraction // not recorded /// 0005625 // soluble fraction // inferred from electronic annotation 0005104 // fibroblast growth factor receptor binding // not recorded /// 0005104 // fibroblast growth factor receptor binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation 1370789_a_at L48060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L48060.1 /DB_XREF=gi:1019650 /FEA=FLmRNA /CNT=1 /TID=Rn.9757.4 /TIER=FL /STK=1 /UG=Rn.9757 /LL=24684 /UG_GENE=Prlr /DEF=Rat (clone R3A) lactogen receptor mRNA, complete cds. /PROD=lactogen receptor /FL=gb:L48060.1 L48060 prolactin receptor Prlr 24684 NM_001034111 /// NM_012630 0007171 // activation of transmembrane receptor protein tyrosine kinase activity // not recorded /// 0007259 // JAK-STAT cascade // not recorded /// 0007595 // lactation // not recorded /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0030155 // regulation of cell adhesion // not recorded /// 0030856 // regulation of epithelial cell differentiation // not recorded /// 0060644 // mammary gland epithelial cell differentiation // not recorded /// 0060736 // prostate gland growth // not recorded /// 0060749 // mammary gland alveolus development // not recorded 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004925 // prolactin receptor activity // inferred from mutant phenotype /// 0004925 // prolactin receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0017046 // peptide hormone binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1370790_at AF010466 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF010466.1 /DB_XREF=gi:2317783 /GEN=IFN-gamma /FEA=FLmRNA /CNT=1 /TID=Rn.10795.1 /TIER=FL /STK=1 /UG=Rn.10795 /DEF=Rattus norvegicus interferon gamma (IFN-gamma) mRNA, complete cds. /PROD=interferon gamma /FL=gb:AF010466.1 AF010466 interferon gamma Ifng 25712 NM_138880 0000060 // protein import into nucleus, translocation // inferred from electronic annotation /// 0000060 // protein import into nucleus, translocation // not recorded /// 0001781 // neutrophil apoptosis // inferred from electronic annotation /// 0001781 // neutrophil apoptosis // not recorded /// 0002026 // regulation of the force of heart contraction // inferred from direct assay /// 0006925 // inflammatory cell apoptosis // inferred from electronic annotation /// 0006925 // inflammatory cell apoptosis // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0009615 // response to virus // inferred from electronic annotation /// 0009615 // response to virus // not recorded /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0019882 // antigen processing and presentation // not recorded /// 0030593 // neutrophil chemotaxis // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // not recorded /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // not recorded /// 0031642 // negative regulation of myelination // inferred from electronic annotation /// 0031642 // negative regulation of myelination // not recorded /// 0032224 // positive regulation of synaptic transmission, cholinergic // inferred from direct assay /// 0032735 // positive regulation of interleukin-12 production // inferred from electronic annotation /// 0032735 // positive regulation of interleukin-12 production // not recorded /// 0033141 // positive regulation of peptidyl-serine phosphorylation of STAT protein // inferred from electronic annotation /// 0033141 // positive regulation of peptidyl-serine phosphorylation of STAT protein // not recorded /// 0034393 // positive regulation of smooth muscle cell apoptosis // inferred from electronic annotation /// 0034393 // positive regulation of smooth muscle cell apoptosis // not recorded /// 0040008 // regulation of growth // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042508 // tyrosine phosphorylation of Stat1 protein // not recorded /// 0042508 // tyrosine phosphorylation of Stat1 protein // inferred from electronic annotation /// 0042511 // positive regulation of tyrosine phosphorylation of Stat1 protein // inferred from electronic annotation /// 0042511 // positive regulation of tyrosine phosphorylation of Stat1 protein // not recorded /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0042742 // defense response to bacterium // not recorded /// 0042832 // defense response to protozoan // inferred from electronic annotation /// 0042832 // defense response to protozoan // not recorded /// 0044130 // negative regulation of growth of symbiont in host // inferred from electronic annotation /// 0044130 // negative regulation of growth of symbiont in host // not recorded /// 0044146 // negative regulation of growth of symbiont involved in interaction with host // not recorded /// 0044146 // negative regulation of growth of symbiont involved in interaction with host // inferred from electronic annotation /// 0045080 // positive regulation of chemokine biosynthetic process // inferred from electronic annotation /// 0045080 // positive regulation of chemokine biosynthetic process // not recorded /// 0045084 // positive regulation of interleukin-12 biosynthetic process // inferred from electronic annotation /// 0045084 // positive regulation of interleukin-12 biosynthetic process // not recorded /// 0045348 // positive regulation of MHC class II biosynthetic process // inferred from electronic annotation /// 0045348 // positive regulation of MHC class II biosynthetic process // not recorded /// 0045410 // positive regulation of interleukin-6 biosynthetic process // inferred from electronic annotation /// 0045410 // positive regulation of interleukin-6 biosynthetic process // not recorded /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045429 // positive regulation of nitric oxide biosynthetic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045666 // positive regulation of neuron differentiation // inferred from direct assay /// 0045785 // positive regulation of cell adhesion // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0048304 // positive regulation of isotype switching to IgG isotypes // inferred from electronic annotation /// 0048304 // positive regulation of isotype switching to IgG isotypes // not recorded /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048662 // negative regulation of smooth muscle cell proliferation // not recorded /// 0050718 // positive regulation of interleukin-1 beta secretion // inferred from electronic annotation /// 0050718 // positive regulation of interleukin-1 beta secretion // not recorded /// 0050776 // regulation of immune response // inferred from electronic annotation /// 0050776 // regulation of immune response // not recorded /// 0050796 // regulation of insulin secretion // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // not recorded /// 0051044 // positive regulation of membrane protein ectodomain proteolysis // inferred from electronic annotation /// 0051044 // positive regulation of membrane protein ectodomain proteolysis // not recorded /// 0051712 // positive regulation of killing of cells of another organism // inferred from electronic annotation /// 0051712 // positive regulation of killing of cells of another organism // not recorded /// 0060550 // positive regulation of fructose 1,6-bisphosphate 1-phosphatase activity // inferred from electronic annotation /// 0060550 // positive regulation of fructose 1,6-bisphosphate 1-phosphatase activity // not recorded /// 0060552 // positive regulation of fructose 1,6-bisphosphate metabolic process // inferred from electronic annotation /// 0060552 // positive regulation of fructose 1,6-bisphosphate metabolic process // not recorded /// 0060557 // positive regulation of vitamin D biosynthetic process // inferred from electronic annotation /// 0060557 // positive regulation of vitamin D biosynthetic process // not recorded /// 0060559 // positive regulation of calcidiol 1-monooxygenase activity // inferred from electronic annotation /// 0060559 // positive regulation of calcidiol 1-monooxygenase activity // not recorded 0005576 // extracellular region // inferred from mutant phenotype /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005622 // intracellular // not recorded 0005125 // cytokine activity // not recorded /// 0005125 // cytokine activity // traceable author statement /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005133 // interferon-gamma receptor binding // inferred from electronic annotation 1370791_at U16683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U16683.1 /DB_XREF=gi:1041804 /FEA=FLmRNA /CNT=1 /TID=Rn.10221.1 /TIER=FL /STK=1 /UG=Rn.10221 /DEF=Rattus norvegicus defensin RatNP-3 precursor mRNA, complete cds. /PROD=defensin RatNP-3 precursor /FL=gb:U16683.1 U16683 defensin RatNP-3 precursor RatNP-3b 498659 NM_001079898 0006952 // defense response // inferred from electronic annotation /// 0031640 // killing of cells of another organism // inferred from electronic annotation /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0050832 // defense response to fungus // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 1370792_at U75920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U75920.1 /DB_XREF=gi:2565033 /FEA=FLmRNA /CNT=1 /TID=Rn.81038.1 /TIER=FL /STK=1 /UG=Rn.81038 /LL=114764 /UG_GENE=Mapre1 /DEF=Rattus norvegicus APC binding protein EB1 mRNA, complete cds. /PROD=APC binding protein EB1 /FL=gb:U75920.1 U75920 microtubule-associated protein, RP/EB family, member 1 Mapre1 114764 NM_138509 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0031115 // negative regulation of microtubule polymerization // not recorded /// 0035372 // protein localization to microtubule // not recorded /// 0035372 // protein localization to microtubule // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // not recorded /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005874 // microtubule // not recorded /// 0005881 // cytoplasmic microtubule // not recorded /// 0030981 // cortical microtubule cytoskeleton // not recorded /// 0031253 // cell projection membrane // not recorded /// 0042995 // cell projection // not recorded 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // inferred from electronic annotation /// 0051010 // microtubule plus-end binding // inferred from direct assay /// 0051010 // microtubule plus-end binding // not recorded 1370793_at D89965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D89965.1 /DB_XREF=gi:1772461 /FEA=FLmRNA /CNT=1 /TID=Affx.1.67 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus mRNA for RSS, complete cds. /PROD=RSS /FL=gb:D89965.1 D89965 0006508 // proteolysis // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0009408 // response to heat // inferred from expression pattern /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005839 // proteasome core complex // inferred from electronic annotation /// 0009376 // HslUV protease complex // inferred from electronic annotation 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370794_at AF217088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF217088.1 /DB_XREF=gi:18026822 /GEN=Bin-1b /FEA=FLmRNA /CNT=1 /TID=Rn.81215.1 /TIER=FL /STK=1 /UG=Rn.81215 /DEF=Rattus norvegicus anti-microbial-like protein BIN-1B (Bin-1b) mRNA, complete cds. /PROD=anti-microbial-like protein BIN-1B /FL=gb:AF217088.1 AF217088 sperm associated antigen 11B Spag11b 246305 NM_145087 0006952 // defense response // inferred from electronic annotation /// 0042742 // defense response to bacterium // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 1370795_at L13193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L13193.1 /DB_XREF=gi:310156 /FEA=FLmRNA /CNT=1 /TID=Affx.1.69 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus brain factor-3 (HFH-BF-3) mRNA, complete cds. /PROD=brain factor-3 /FL=gb:L13193.1 L13193 forkhead box C2 Foxc2 171356 NM_001101680 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1370796_at L13205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L13205.1 /DB_XREF=gi:310158 /FEA=FLmRNA /CNT=1 /TID=Affx.1.70 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus HNF-3fork-head homolog-5 (HFH-5) mRNA, complete cds. /PROD=HNF-3fork-head homolog-5 /FL=gb:L13205.1 L13205 forkhead box I2 Foxi2 246073 XM_001056035 /// XM_341949 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1370797_at L13207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L13207.1 /DB_XREF=gi:310162 /FEA=FLmRNA /CNT=1 /TID=Affx.1.71 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus HNF-3fork-head homolog-7 (HFH-7) mRNA, complete cds. /PROD=HNF-3fork-head homolog-7 /FL=gb:L13207.1 L13207 forkhead box E3 Foxe3 171302 XM_001069443 /// XM_233428 0001654 // eye development // inferred from electronic annotation /// 0001654 // eye development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048468 // cell development // inferred from electronic annotation /// 0048468 // cell development // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1370798_a_at AB056656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB056656.1 /DB_XREF=gi:13365560 /GEN=NGB-2 /FEA=FLmRNA /CNT=1 /TID=Rn.64645.2 /TIER=FL /STK=1 /UG=Rn.64645 /LL=85382 /DEF=Rattus norvegicus NGB-2 mRNA for neuroglobin-2, complete cds. /PROD=neuroglobin-2 /FL=gb:AB056656.1 AB056656 neuroglobin Ngb 85382 NM_033359 0006810 // transport // inferred from electronic annotation /// 0015671 // oxygen transport // inferred from electronic annotation /// 0015671 // oxygen transport // not recorded 0005344 // oxygen transporter activity // not recorded /// 0005344 // oxygen transporter activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0019825 // oxygen binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370799_at AF462063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF462063.1 /DB_XREF=gi:19716319 /GEN=Nhe /FEA=FLmRNA /CNT=1 /TID=Rn.5025.2 /TIER=FL /STK=1 /UG=Rn.5025 /LL=24782 /DEF=Rattus norvegicus chloride-dependent sodiumhydrogen exchanger (Nhe) mRNA, complete cds. /PROD=chloride-dependent sodiumhydrogen exchanger /FL=gb:AF462063.1 AF462063 Solute carrier family 9 (sodium/hydrogen exchanger), member 1 Slc9a1 24782 NM_012652 0001101 // response to acid // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006814 // sodium ion transport // not recorded /// 0006814 // sodium ion transport // traceable author statement /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006885 // regulation of pH // not recorded /// 0006885 // regulation of pH // traceable author statement /// 0006885 // regulation of pH // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from mutant phenotype /// 0010447 // response to acidity // not recorded /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0015992 // proton transport // not recorded /// 0016049 // cell growth // inferred from expression pattern /// 0030154 // cell differentiation // inferred from expression pattern /// 0034220 // ion transmembrane transport // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from direct assay /// 0015297 // antiporter activity // inferred from electronic annotation /// 0015299 // solute:hydrogen antiporter activity // inferred from electronic annotation /// 0015385 // sodium:hydrogen antiporter activity // inferred from mutant phenotype /// 0015385 // sodium:hydrogen antiporter activity // not recorded /// 0015385 // sodium:hydrogen antiporter activity // traceable author statement /// 0015385 // sodium:hydrogen antiporter activity // inferred from electronic annotation 1370800_at AF462063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF462063.1 /DB_XREF=gi:19716319 /GEN=Nhe /FEA=FLmRNA /CNT=1 /TID=Rn.5025.2 /TIER=ConsEnd /STK=0 /UG=Rn.5025 /LL=24782 /DEF=Rattus norvegicus chloride-dependent sodiumhydrogen exchanger (Nhe) mRNA, complete cds. /PROD=chloride-dependent sodiumhydrogen exchanger /FL=gb:AF462063.1 AF462063 Solute carrier family 9 (sodium/hydrogen exchanger), member 1 Slc9a1 24782 NM_012652 0001101 // response to acid // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006814 // sodium ion transport // not recorded /// 0006814 // sodium ion transport // traceable author statement /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006885 // regulation of pH // not recorded /// 0006885 // regulation of pH // traceable author statement /// 0006885 // regulation of pH // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from mutant phenotype /// 0010447 // response to acidity // not recorded /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0015992 // proton transport // not recorded /// 0016049 // cell growth // inferred from expression pattern /// 0030154 // cell differentiation // inferred from expression pattern /// 0034220 // ion transmembrane transport // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from direct assay /// 0015297 // antiporter activity // inferred from electronic annotation /// 0015299 // solute:hydrogen antiporter activity // inferred from electronic annotation /// 0015385 // sodium:hydrogen antiporter activity // inferred from mutant phenotype /// 0015385 // sodium:hydrogen antiporter activity // not recorded /// 0015385 // sodium:hydrogen antiporter activity // traceable author statement /// 0015385 // sodium:hydrogen antiporter activity // inferred from electronic annotation 1370801_at AF336872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF336872.1 /DB_XREF=gi:17066512 /FEA=FLmRNA /CNT=1 /TID=Rn.16988.1 /TIER=FL /STK=1 /UG=Rn.16988 /DEF=Rattus norvegicus V1-type AVP membrane receptor mRNA, complete cds. /PROD=V1-type AVP membrane receptor /FL=gb:AF336872.1 AF336872 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1370802_at AF336872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF336872.1 /DB_XREF=gi:17066512 /FEA=FLmRNA /CNT=1 /TID=Rn.16988.1 /TIER=ConsEnd /STK=0 /UG=Rn.16988 /DEF=Rattus norvegicus V1-type AVP membrane receptor mRNA, complete cds. /PROD=V1-type AVP membrane receptor /FL=gb:AF336872.1 AF336872 integrin, beta 5 Itgb5 257645 NM_147139 0006936 // muscle contraction // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0005925 // focal adhesion // not recorded /// 0008305 // integrin complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031252 // cell leading edge // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1370803_at AF439397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF439397.1 /DB_XREF=gi:17063944 /GEN=Sip30 /FEA=FLmRNA /CNT=92 /TID=Rn.7624.1 /TIER=FL+Stack /STK=41 /UG=Rn.7624 /DEF=Rattus norvegicus SNAP25 interacting protein 30 (Sip30) mRNA, complete cds. /PROD=SNAP25 interacting protein 30 /FL=gb:AF439397.1 AF439397 ZW10 interactor Zwint 257644 NM_147138 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0019717 // synaptosome // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 1370804_at AF161588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF161588.1 /DB_XREF=gi:5712777 /GEN=Gabarap /FEA=FLmRNA /CNT=32 /TID=Rn.8411.1 /TIER=FL+Stack /STK=23 /UG=Rn.8411 /LL=58974 /DEF=Rattus norvegicus GABA-A receptor-associated protein (Gabarap) mRNA, complete cds. /PROD=GABA-A receptor-associated protein /FL=gb:AF161588.1 AF161588 GABA(A) receptor-associated protein Gabarap 58974 NM_172036 0000226 // microtubule cytoskeleton organization // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0000421 // autophagic vacuole membrane // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005790 // smooth endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // not recorded /// 0005886 // plasma membrane // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // not recorded /// 0048487 // beta-tubulin binding // not recorded /// 0050811 // GABA receptor binding // not recorded 1370805_at AF104399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF104399.1 /DB_XREF=gi:4063710 /GEN=msg1 /FEA=FLmRNA /CNT=28 /TID=Rn.8163.1 /TIER=FL+Stack /STK=20 /UG=Rn.8163 /LL=64466 /DEF=Rattus norvegicus melanocyte-specific gene 1 protein (msg1) mRNA, complete cds. /PROD=melanocyte-specific gene 1 protein /FL=gb:AF104399.1 AF104399 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 Cited1 64466 NM_172055 0000578 // embryonic axis specification // inferred from direct assay /// 0001570 // vasculogenesis // not recorded /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from mutant phenotype /// 0001822 // kidney development // not recorded /// 0001890 // placenta development // not recorded /// 0001890 // placenta development // inferred from electronic annotation /// 0001890 // placenta development // inferred from sequence or structural similarity /// 0002009 // morphogenesis of an epithelium // not recorded /// 0003340 // negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis // inferred from mutant phenotype /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from direct assay /// 0030318 // melanocyte differentiation // not recorded /// 0030318 // melanocyte differentiation // inferred from electronic annotation /// 0030318 // melanocyte differentiation // inferred from sequence or structural similarity /// 0032496 // response to lipopolysaccharide // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from sequence or structural similarity /// 0032868 // response to insulin stimulus // not recorded /// 0032868 // response to insulin stimulus // inferred from electronic annotation /// 0032868 // response to insulin stimulus // inferred from sequence or structural similarity /// 0034097 // response to cytokine stimulus // not recorded /// 0034097 // response to cytokine stimulus // inferred from electronic annotation /// 0034097 // response to cytokine stimulus // inferred from sequence or structural similarity /// 0034341 // response to interferon-gamma // not recorded /// 0034341 // response to interferon-gamma // inferred from electronic annotation /// 0034341 // response to interferon-gamma // inferred from sequence or structural similarity /// 0042438 // melanin biosynthetic process // not recorded /// 0042438 // melanin biosynthetic process // inferred from electronic annotation /// 0042438 // melanin biosynthetic process // inferred from sequence or structural similarity /// 0043473 // pigmentation // not recorded /// 0043473 // pigmentation // inferred from electronic annotation /// 0043473 // pigmentation // inferred from sequence or structural similarity /// 0043627 // response to estrogen stimulus // not recorded /// 0043627 // response to estrogen stimulus // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045668 // negative regulation of osteoblast differentiation // not recorded /// 0045668 // negative regulation of osteoblast differentiation // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from direct assay /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0051591 // response to cAMP // not recorded /// 0051591 // response to cAMP // inferred from electronic annotation /// 0051591 // response to cAMP // inferred from sequence or structural similarity /// 0060395 // SMAD protein signal transduction // not recorded /// 0060395 // SMAD protein signal transduction // inferred from electronic annotation /// 0060711 // labyrinthine layer development // not recorded /// 0060711 // labyrinthine layer development // inferred from electronic annotation /// 0060712 // spongiotrophoblast layer development // not recorded /// 0060712 // spongiotrophoblast layer development // inferred from electronic annotation /// 0070555 // response to interleukin-1 // not recorded /// 0070555 // response to interleukin-1 // inferred from electronic annotation /// 0070555 // response to interleukin-1 // inferred from sequence or structural similarity /// 0070669 // response to interleukin-2 // not recorded /// 0070669 // response to interleukin-2 // inferred from electronic annotation /// 0070669 // response to interleukin-2 // inferred from sequence or structural similarity /// 0070670 // response to interleukin-4 // not recorded /// 0070670 // response to interleukin-4 // inferred from electronic annotation /// 0070670 // response to interleukin-4 // inferred from sequence or structural similarity /// 0070741 // response to interleukin-6 // not recorded /// 0070741 // response to interleukin-6 // inferred from electronic annotation /// 0070741 // response to interleukin-6 // inferred from sequence or structural similarity /// 0071104 // response to interleukin-9 // not recorded /// 0071104 // response to interleukin-9 // inferred from electronic annotation /// 0071104 // response to interleukin-9 // inferred from sequence or structural similarity /// 0071105 // response to interleukin-11 // not recorded /// 0071105 // response to interleukin-11 // inferred from electronic annotation /// 0071105 // response to interleukin-11 // inferred from sequence or structural similarity /// 0071107 // response to parathyroid hormone stimulus // not recorded /// 0071107 // response to parathyroid hormone stimulus // inferred from electronic annotation /// 0071107 // response to parathyroid hormone stimulus // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity 0003713 // transcription coactivator activity // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from direct assay /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from direct assay /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0050693 // LBD domain binding // not recorded /// 0050693 // LBD domain binding // inferred from electronic annotation /// 0070410 // co-SMAD binding // not recorded /// 0070410 // co-SMAD binding // inferred from electronic annotation 1370806_at AF465614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF465614.1 /DB_XREF=gi:18481638 /FEA=FLmRNA /CNT=27 /TID=Rn.55275.1 /TIER=FL+Stack /STK=19 /UG=Rn.55275 /DEF=Rattus norvegicus hypothetical protein RMT-7 mRNA, complete cds. /PROD=hypothetical protein RMT-7 /FL=gb:AF465614.1 AF465614 retinol saturase (all trans retinol 13,14 reductase) Retsat 246298 NM_145084 0042572 // retinol metabolic process // not recorded /// 0042572 // retinol metabolic process // inferred from sequence or structural similarity /// 0042572 // retinol metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded /// 0055114 // oxidation reduction // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred from electronic annotation 0005640 // nuclear outer membrane // not recorded /// 0005640 // nuclear outer membrane // inferred from sequence or structural similarity /// 0005640 // nuclear outer membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded /// 0031965 // nuclear membrane // inferred from sequence or structural similarity /// 0031965 // nuclear membrane // inferred from electronic annotation 0016491 // oxidoreductase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from sequence or structural similarity /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0051786 // all-trans-retinol 13,14-reductase activity // not recorded /// 0051786 // all-trans-retinol 13,14-reductase activity // inferred from sequence or structural similarity /// 0051786 // all-trans-retinol 13,14-reductase activity // inferred from electronic annotation 1370807_at AF411216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF411216.1 /DB_XREF=gi:15705882 /FEA=FLmRNA /CNT=23 /TID=Rn.840.1 /TIER=FL+Stack /STK=18 /UG=Rn.840 /DEF=Rattus norvegicus vacuole membrane protein 1 mRNA, complete cds. /PROD=vacuole membrane protein 1 /FL=gb:AF411216.1 AF411216 transmembrane protein 49 Tmem49 192129 NM_138839 0005783 // endoplasmic reticulum // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0033116 // ER-Golgi intermediate compartment membrane // inferred from electronic annotation 1370808_at J03867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J03867.1 /DB_XREF=gi:203696 /FEA=FLmRNA /CNT=26 /TID=Rn.35994.1 /TIER=FL+Stack /STK=17 /UG=Rn.35994 /UG_TITLE=Rat NADH-cytochrome b-5 reductase mRNA, complete cds /DEF=Rat NADH-cytochrome b-5 reductase mRNA, complete cds. /FL=gb:J03867.1 J03867 cytochrome b5 reductase 3 Cyb5r3 25035 NM_138877 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004128 // cytochrome-b5 reductase activity // traceable author statement /// 0004128 // cytochrome-b5 reductase activity // inferred from electronic annotation /// 0016208 // AMP binding // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0043531 // ADP binding // inferred from direct assay /// 0050660 // FAD or FADH2 binding // inferred from direct assay /// 0051287 // NAD or NADH binding // inferred from direct assay 1370809_at AB015946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB015946.1 /DB_XREF=gi:4115723 /FEA=FLmRNA /CNT=20 /TID=Rn.8218.1 /TIER=FL+Stack /STK=16 /UG=Rn.8218 /DEF=Rattus norvegicus mRNA for tubulin, complete cds. /PROD=tubulin /FL=gb:AB015946.1 AB015946 tubulin, gamma 1 Tubg1 252921 NM_145778 0000212 // meiotic spindle organization // not recorded /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0007020 // microtubule nucleation // traceable author statement /// 0051258 // protein polymerization // inferred from electronic annotation 0000242 // pericentriolar material // inferred from electronic annotation /// 0000242 // pericentriolar material // not recorded /// 0000794 // condensed nuclear chromosome // not recorded /// 0000930 // gamma-tubulin complex // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005813 // centrosome // inferred from electronic annotation /// 0005814 // centriole // inferred from electronic annotation /// 0005814 // centriole // not recorded /// 0005815 // microtubule organizing center // traceable author statement /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005827 // polar microtubule // not recorded /// 0005827 // polar microtubule // inferred from sequence or structural similarity /// 0005827 // polar microtubule // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded /// 0005876 // spindle microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // not recorded /// 0031252 // cell leading edge // inferred from electronic annotation /// 0031252 // cell leading edge // not recorded /// 0043234 // protein complex // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1370810_at L09752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L09752.1 /DB_XREF=gi:203703 /GEN=VIN1 /FEA=FLmRNA /CNT=25 /TID=Rn.25764.1 /TIER=FL+Stack /STK=15 /UG=Rn.25764 /LL=64033 /DEF=Rat cyclin D2 (VIN1) mRNA, complete cds. /PROD=cyclin D2 /FL=gb:L09752.1 L09752 cyclin D2 Ccnd2 64033 NM_022267 0000082 // G1/S transition of mitotic cell cycle // inferred from expression pattern /// 0000082 // G1/S transition of mitotic cell cycle // inferred from mutant phenotype /// 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0001541 // ovarian follicle development // inferred from expression pattern /// 0001889 // liver development // inferred from expression pattern /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0045664 // regulation of neuron differentiation // inferred from expression pattern /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation /// 0051591 // response to cAMP // inferred from expression pattern /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded 0000307 // cyclin-dependent protein kinase holoenzyme complex // inferred from electronic annotation /// 0000307 // cyclin-dependent protein kinase holoenzyme complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019901 // protein kinase binding // inferred from direct assay /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from electronic annotation 1370811_at D50564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D50564.1 /DB_XREF=gi:1741863 /FEA=FLmRNA /CNT=19 /TID=Rn.32263.1 /TIER=FL+Stack /STK=15 /UG=Rn.32263 /DEF=Rattus norvegicus mRNA for mercaptopyruvate sulfurtransferase, complete cds. /PROD=mercaptopyruvate sulfurtransferase /FL=gb:D50564.1 D50564 mercaptopyruvate sulfurtransferase Mpst 192172 NM_138843 0008272 // sulfate transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded 0004792 // thiosulfate sulfurtransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016784 // 3-mercaptopyruvate sulfurtransferase activity // inferred from electronic annotation 1370812_at U72350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U72350.1 /DB_XREF=gi:1622936 /FEA=FLmRNA /CNT=23 /TID=Rn.10323.3 /TIER=FL+Stack /STK=14 /UG=Rn.10323 /LL=24888 /UG_GENE=Bcl2l /DEF=Rattus norvegicus Bcl-xalpha mRNA, complete cds. /PROD=Bcl-xalpha /FL=gb:U34963.1 gb:U72350.1 U72350 Bcl2-like 1 Bcl2l1 24888 NM_001033670 /// NM_001033671 /// NM_001033672 /// NM_031535 0001541 // ovarian follicle development // inferred from mutant phenotype /// 0001541 // ovarian follicle development // not recorded /// 0001541 // ovarian follicle development // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // not recorded /// 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0006915 // apoptosis // inferred from expression pattern /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from direct assay /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006950 // response to stress // inferred from expression pattern /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0007281 // germ cell development // not recorded /// 0007281 // germ cell development // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0008584 // male gonad development // inferred from electronic annotation /// 0009314 // response to radiation // not recorded /// 0009314 // response to radiation // inferred from electronic annotation /// 0009566 // fertilization // not recorded /// 0009566 // fertilization // inferred from electronic annotation /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010288 // response to lead ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0034097 // response to cytokine stimulus // not recorded /// 0034097 // response to cytokine stimulus // inferred from electronic annotation /// 0040007 // growth // not recorded /// 0040007 // growth // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0042981 // regulation of apoptosis // inferred from direct assay /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0045768 // positive regulation of anti-apoptosis // not recorded /// 0045768 // positive regulation of anti-apoptosis // inferred from electronic annotation /// 0046898 // response to cycloheximide // not recorded /// 0046898 // response to cycloheximide // inferred from electronic annotation /// 0046902 // regulation of mitochondrial membrane permeability // not recorded /// 0046902 // regulation of mitochondrial membrane permeability // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051881 // regulation of mitochondrial membrane potential // not recorded /// 0051881 // regulation of mitochondrial membrane potential // inferred from electronic annotation 0000299 // integral to membrane of membrane fraction // traceable author statement /// 0005622 // intracellular // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005740 // mitochondrial envelope // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005741 // mitochondrial outer membrane // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // not recorded /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0044429 // mitochondrial part // not recorded /// 0044429 // mitochondrial part // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0043027 // caspase inhibitor activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0051400 // BH domain binding // inferred from physical interaction /// 0070215 // MDM2 binding // inferred from physical interaction 1370813_at U86635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U86635.1 /DB_XREF=gi:4099364 /FEA=FLmRNA /CNT=16 /TID=Rn.9158.1 /TIER=FL+Stack /STK=13 /UG=Rn.9158 /LL=64352 /UG_GENE=Gstm5 /DEF=Rattus norvegicus glutathione s-transferase M5 mRNA, complete cds. /PROD=glutathione s-transferase M5 /FL=gb:U86635.1 U86635 glutathione S-transferase, mu 5 Gstm5 64352 NM_172038 0008152 // metabolic process // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0004364 // glutathione transferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation 1370814_at AB062758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB062758.1 /DB_XREF=gi:17298120 /FEA=FLmRNA /CNT=16 /TID=Rn.12783.1 /TIER=FL+Stack /STK=11 /UG=Rn.12783 /DEF=Rattus norvegicus mRNA for carbonyl reductaseNADP-retinol dehydrogenase, complete cds. /PROD=carbonyl reductaseNADP-retinol dehydrogenase /FL=gb:AB062758.1 AB062758 dehydrogenase/reductase (SDR family) member 4 Dhrs4 266686 NM_153315 0008152 // metabolic process // inferred from electronic annotation /// 0042574 // retinal metabolic process // inferred from electronic annotation /// 0042574 // retinal metabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005777 // peroxisome // inferred from mutant phenotype /// 0005777 // peroxisome // not recorded /// 0005777 // peroxisome // inferred from electronic annotation 0001758 // retinal dehydrogenase activity // inferred from electronic annotation /// 0001758 // retinal dehydrogenase activity // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004090 // carbonyl reductase (NADPH) activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1370815_at AF031879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF031879.1 /DB_XREF=gi:2642597 /GEN=NF-H /FEA=FLmRNA /CNT=58 /TID=Rn.1429.1 /TIER=FL+Stack /STK=10 /UG=Rn.1429 /LL=24587 /DEF=Rattus norvegicus high molecular-weight neurofilament (NF-H) mRNA, complete cds. /PROD=high molecular-weight neurofilament /FL=gb:AF031879.1 AF031879 neurofilament, heavy polypeptide Nefh 24587 NM_012607 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0000226 // microtubule cytoskeleton organization // not recorded /// 0045104 // intermediate filament cytoskeleton organization // not recorded /// 0045104 // intermediate filament cytoskeleton organization // inferred from electronic annotation /// 0045110 // intermediate filament bundle assembly // inferred from electronic annotation /// 0045110 // intermediate filament bundle assembly // not recorded /// 0060052 // neurofilament cytoskeleton organization // inferred from electronic annotation /// 0060052 // neurofilament cytoskeleton organization // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005882 // intermediate filament // inferred from electronic annotation /// 0005883 // neurofilament // inferred from electronic annotation /// 0005883 // neurofilament // not recorded 0005515 // protein binding // inferred from direct assay 1370816_at M25804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M25804.1 /DB_XREF=gi:514963 /FEA=FLmRNA /CNT=17 /TID=Rn.29848.1 /TIER=FL+Stack /STK=10 /UG=Rn.29848 /DEF=Rat Rev-ErbA-alpha protein mRNA, complete cds. /PROD=Rev-erbA-alpha protein /FL=gb:M25804.1 M25804 nuclear receptor subfamily 1, group D, member 1 Nr1d1 252917 NM_001113422 /// NM_145775 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0007623 // circadian rhythm // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370817_at AB022714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB022714.2 /DB_XREF=gi:4586673 /FEA=FLmRNA /CNT=13 /TID=Rn.16883.1 /TIER=FL+Stack /STK=10 /UG=Rn.16883 /DEF=Rattus norvegicus mRNA for signal peptidase 21kDa subunit, complete cds. /PROD=signal peptidase 21kDa subunit /FL=gb:AB022714.2 AB022714 SEC11 homolog C (S. cerevisiae) Sec11c 266758 NM_153628 0006465 // signal peptide processing // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1370818_at AF044574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF044574.1 /DB_XREF=gi:4105268 /GEN=DCR-AKL /FEA=FLmRNA /CNT=15 /TID=Rn.7879.1 /TIER=FL+Stack /STK=9 /UG=Rn.7879 /LL=64461 /DEF=Rattus norvegicus putative peroxisomal 2,4-dienoyl-CoA reductase (DCR-AKL) mRNA, complete cds. /PROD=putative peroxisomal 2,4-dienoyl-CoA reductase /FL=gb:AF044574.1 AF044574 2,4-dienoyl CoA reductase 2, peroxisomal Decr2 64461 NM_171996 0006183 // GTP biosynthetic process // inferred from electronic annotation /// 0006228 // UTP biosynthetic process // inferred from electronic annotation /// 0006241 // CTP biosynthetic process // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004550 // nucleoside diphosphate kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008670 // 2,4-dienoyl-CoA reductase (NADPH) activity // inferred from direct assay /// 0008670 // 2,4-dienoyl-CoA reductase (NADPH) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1370819_at AB063114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB063114.1 /DB_XREF=gi:14422450 /FEA=FLmRNA /CNT=16 /TID=Rn.8046.2 /TIER=FL+Stack /STK=9 /UG=Rn.8046 /LL=64462 /UG_GENE=Csnk1d /DEF=Rattus norvegicus mRNA for casein kinase 1 delta, complete cds. /PROD=casein kinase 1 delta /FL=gb:AB063114.1 AB063114 casein kinase 1, delta Csnk1d 64462 NM_139060 0000278 // mitotic cell cycle // traceable author statement /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0032922 // circadian regulation of gene expression // not recorded /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0042752 // regulation of circadian rhythm // not recorded /// 0042752 // regulation of circadian rhythm // inferred from sequence or structural similarity /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // traceable author statement /// 0005819 // spindle // traceable author statement /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // inferred from direct assay /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0051219 // phosphoprotein binding // inferred from direct assay 1370820_at AF393484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF393484.1 /DB_XREF=gi:14595687 /GEN=Fbg2 /FEA=FLmRNA /CNT=22 /TID=Rn.3601.1 /TIER=FL+Stack /STK=8 /UG=Rn.3601 /DEF=Rattus norvegicus F-box protein FBG2 (Fbg2) mRNA, complete cds. /PROD=F-box protein FBG2 /FL=gb:AF393484.1 AF393484 F-box protein 6 Fbxo6 192351 NM_138917 0006281 // DNA repair // inferred from electronic annotation /// 0006516 // glycoprotein catabolic process // inferred from electronic annotation /// 0006516 // glycoprotein catabolic process // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0030433 // ER-associated protein catabolic process // not recorded /// 0030433 // ER-associated protein catabolic process // inferred from sequence or structural similarity /// 0030433 // ER-associated protein catabolic process // inferred from electronic annotation /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0019005 // SCF ubiquitin ligase complex // not recorded /// 0019005 // SCF ubiquitin ligase complex // inferred from sequence or structural similarity /// 0019005 // SCF ubiquitin ligase complex // inferred from electronic annotation 0001948 // glycoprotein binding // not recorded /// 0001948 // glycoprotein binding // inferred from sequence or structural similarity /// 0001948 // glycoprotein binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0030246 // carbohydrate binding // not recorded 1370821_at AF120100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF120100.1 /DB_XREF=gi:4325176 /GEN=tpmt /FEA=FLmRNA /CNT=14 /TID=Rn.31429.2 /TIER=FL+Stack /STK=8 /UG=Rn.31429 /LL=83497 /DEF=Rattus norvegicus thiopurine S-methyltransferase (tpmt) mRNA, complete cds. /PROD=thiopurine S-methyltransferase /FL=gb:AF120100.1 AF120100 thiopurine S-methyltransferase Tpmt 690050 NM_001079531 0008152 // metabolic process // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0032259 // methylation // not recorded /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0046498 // S-adenosylhomocysteine metabolic process // inferred from direct assay /// 0046500 // S-adenosylmethionine metabolic process // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005923 // tight junction // non-traceable author statement 0008119 // thiopurine S-methyltransferase activity // not recorded /// 0008119 // thiopurine S-methyltransferase activity // inferred from direct assay /// 0008119 // thiopurine S-methyltransferase activity // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation 1370822_at AF307302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF307302.1 /DB_XREF=gi:18369834 /FEA=FLmRNA /CNT=13 /TID=Rn.25717.1 /TIER=FL+Stack /STK=8 /UG=Rn.25717 /LL=116505 /UG_GENE=Btnl2 /DEF=Rattus norvegicus activated B cell RT1Bl alpha chain mRNA, complete cds. /PROD=activated B cell RT1Bl alpha chain /FL=gb:AF307302.1 AF307302 RT1 class II, locus Ba RT1-Ba 309621 NM_001008831 0002504 // antigen processing and presentation of peptide or polysaccharide antigen via MHC class II // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // not recorded /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // not recorded /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // inferred from electronic annotation /// 0045582 // positive regulation of T cell differentiation // not recorded /// 0045582 // positive regulation of T cell differentiation // inferred from electronic annotation /// 0048002 // antigen processing and presentation of peptide antigen // not recorded /// 0048002 // antigen processing and presentation of peptide antigen // inferred from electronic annotation 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042613 // MHC class II protein complex // inferred from electronic annotation /// 0042613 // MHC class II protein complex // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042605 // peptide antigen binding // not recorded /// 0042605 // peptide antigen binding // inferred from electronic annotation 1370823_at AF387513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF387513.1 /DB_XREF=gi:14572042 /FEA=FLmRNA /CNT=11 /TID=Rn.25267.1 /TIER=FL+Stack /STK=8 /UG=Rn.25267 /DEF=Rattus norvegicus kinase-deficient TGFbeta superfamily receptor subunit mRNA, complete cds. /PROD=kinase-deficient TGFbeta superfamily receptorsubunit /FL=gb:AF387513.1 AF387513 BMP and activin membrane-bound inhibitor, homolog (Xenopus laevis) Bambi 83837 NM_139082 0007179 // transforming growth factor beta receptor signaling pathway // inferred from expression pattern /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from electronic annotation /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1370824_at AF273025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF273025.1 /DB_XREF=gi:8926331 /FEA=FLmRNA /CNT=11 /TID=Rn.32067.1 /TIER=FL+Stack /STK=8 /UG=Rn.32067 /DEF=Rattus norvegicus amino acid system N transporter mRNA, complete cds. /PROD=amino acid system N transporter /FL=gb:AF273025.1 AF273025 solute carrier family 38, member 3 Slc38a3 252919 NM_145776 0003333 // amino acid transmembrane transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded /// 0006867 // asparagine transport // inferred from direct assay /// 0006867 // asparagine transport // not recorded /// 0006868 // glutamine transport // inferred from direct assay /// 0006868 // glutamine transport // not recorded /// 0006868 // glutamine transport // inferred from electronic annotation /// 0015807 // L-amino acid transport // not recorded /// 0015808 // L-alanine transport // not recorded /// 0015817 // histidine transport // inferred from direct assay /// 0015817 // histidine transport // not recorded /// 0015817 // histidine transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005290 // L-histidine transmembrane transporter activity // inferred from direct assay /// 0005290 // L-histidine transmembrane transporter activity // not recorded /// 0005290 // L-histidine transmembrane transporter activity // inferred from electronic annotation /// 0015180 // L-alanine transmembrane transporter activity // not recorded /// 0015182 // L-asparagine transmembrane transporter activity // inferred from direct assay /// 0015182 // L-asparagine transmembrane transporter activity // not recorded /// 0015186 // L-glutamine transmembrane transporter activity // inferred from direct assay /// 0015186 // L-glutamine transmembrane transporter activity // not recorded /// 0015186 // L-glutamine transmembrane transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation 1370825_a_at AA925473 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925473 /DB_XREF=gi:4236664 /DB_XREF=UI-R-A1-ep-a-02-0-UI.s1 /CLONE=UI-R-A1-ep-a-02-0-UI /FEA=EST /CNT=10 /TID=Rn.8112.2 /TIER=Stack /STK=9 /UG=Rn.8112 /LL=64465 /UG_GENE=Cdc42 /UG_TITLE=cell division cycle 42 AA925473 cell division cycle 42 (GTP binding protein) Cdc42 64465 NM_171994 0001934 // positive regulation of protein phosphorylation // not recorded /// 0003334 // keratinocyte development // not recorded /// 0006184 // GTP catabolic process // not recorded /// 0007088 // regulation of mitosis // inferred from electronic annotation /// 0007088 // regulation of mitosis // not recorded /// 0007097 // nuclear migration // inferred from electronic annotation /// 0007097 // nuclear migration // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0009749 // response to glucose stimulus // traceable author statement /// 0010628 // positive regulation of gene expression // not recorded /// 0010629 // negative regulation of gene expression // not recorded /// 0016337 // cell-cell adhesion // not recorded /// 0017157 // regulation of exocytosis // traceable author statement /// 0030010 // establishment of cell polarity // traceable author statement /// 0030036 // actin cytoskeleton organization // not recorded /// 0031069 // hair follicle morphogenesis // not recorded /// 0031274 // positive regulation of pseudopodium assembly // not recorded /// 0031333 // negative regulation of protein complex assembly // not recorded /// 0031424 // keratinization // not recorded /// 0031647 // regulation of protein stability // not recorded /// 0033138 // positive regulation of peptidyl-serine phosphorylation // not recorded /// 0034332 // adherens junction organization // inferred from electronic annotation /// 0034332 // adherens junction organization // not recorded /// 0034613 // cellular protein localization // inferred from electronic annotation /// 0034613 // cellular protein localization // not recorded /// 0035088 // establishment or maintenance of apical/basal cell polarity // inferred from electronic annotation /// 0035088 // establishment or maintenance of apical/basal cell polarity // not recorded /// 0035264 // multicellular organism growth // not recorded /// 0042176 // regulation of protein catabolic process // not recorded /// 0043552 // positive regulation of phosphoinositide 3-kinase activity // inferred from electronic annotation /// 0043552 // positive regulation of phosphoinositide 3-kinase activity // not recorded /// 0045740 // positive regulation of DNA replication // inferred from mutant phenotype /// 0045859 // regulation of protein kinase activity // not recorded /// 0046330 // positive regulation of JNK cascade // inferred from direct assay /// 0046847 // filopodium assembly // inferred from electronic annotation /// 0046847 // filopodium assembly // not recorded /// 0048664 // neuron fate determination // inferred from electronic annotation /// 0048664 // neuron fate determination // not recorded /// 0048730 // epidermis morphogenesis // not recorded /// 0051017 // actin filament bundle assembly // not recorded /// 0051246 // regulation of protein metabolic process // not recorded /// 0051647 // nucleus localization // inferred from electronic annotation /// 0051647 // nucleus localization // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060684 // epithelial-mesenchymal cell signaling // not recorded /// 0060789 // hair follicle placode formation // not recorded /// 0071338 // positive regulation of hair follicle cell proliferation // not recorded /// 0090136 // epithelial cell-cell adhesion // not recorded 0000139 // Golgi membrane // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay /// 0030175 // filopodium // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0042995 // cell projection // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // traceable author statement /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation /// 0030742 // GTP-dependent protein binding // inferred from electronic annotation /// 0030742 // GTP-dependent protein binding // not recorded /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from physical interaction /// 0031996 // thioesterase binding // not recorded 1370826_at AF062594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF062594.1 /DB_XREF=gi:3786397 /FEA=FLmRNA /CNT=30 /TID=Rn.18480.1 /TIER=FL+Stack /STK=6 /UG=Rn.18480 /LL=89825 /UG_GENE=Nap1l1 /DEF=Rattus norvegicus nucleosome assembly protein mRNA, complete cds. /PROD=nucleosome assembly protein /FL=gb:AF062594.1 AF062594 nucleosome assembly protein 1-like 1 Nap1l1 89825 NM_053561 0006334 // nucleosome assembly // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0005515 // protein binding // not recorded 1370827_at AF307840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF307840.1 /DB_XREF=gi:12007116 /FEA=FLmRNA /CNT=13 /TID=Rn.3334.1 /TIER=FL+Stack /STK=6 /UG=Rn.3334 /LL=171015 /UG_GENE=b5&b5R /DEF=Rattus norvegicus hemoflavoprotein b5b5r mRNA, complete cds. /PROD=hemoflavoprotein b5b5r /FL=gb:AF307840.1 AF307840 cytochrome b5 reductase 4 Cyb5r4 171015 NM_133427 0006091 // generation of precursor metabolites and energy // not recorded /// 0006739 // NADP metabolic process // inferred from direct assay /// 0006801 // superoxide metabolic process // not recorded /// 0008152 // metabolic process // not recorded /// 0030073 // insulin secretion // not recorded /// 0042593 // glucose homeostasis // not recorded /// 0046677 // response to antibiotic // not recorded /// 0048468 // cell development // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0003958 // NADPH-hemoprotein reductase activity // inferred from direct assay /// 0004128 // cytochrome-b5 reductase activity // inferred from electronic annotation /// 0004128 // cytochrome-b5 reductase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016174 // NAD(P)H oxidase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016653 // oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor // not recorded /// 0020037 // heme binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from direct assay 1370828_at AF228917 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF228917.1 /DB_XREF=gi:7230611 /GEN=srec /FEA=FLmRNA /CNT=10 /TID=Rn.17310.1 /TIER=FL+Stack /STK=6 /UG=Rn.17310 /DEF=Rattus norvegicus small rec (srec) mRNA, complete cds. /PROD=small rec /FL=gb:AF228917.1 AF228917 zinc finger, DHHC-type containing 2 Zdhhc2 246326 NM_145096 0018345 // protein palmitoylation // inferred from electronic annotation /// 0018345 // protein palmitoylation // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016409 // palmitoyltransferase activity // inferred from electronic annotation /// 0016409 // palmitoyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370829_at M69056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M69056.1 /DB_XREF=gi:204185 /FEA=FLmRNA /CNT=12 /TID=Rn.8873.1 /TIER=FL+Stack /STK=6 /UG=Rn.8873 /LL=64511 /UG_GENE=Fntb /DEF=Rat farnesyltransferase beta subunit mRNA, complete cds. /PROD=farnesyl-protein transferase beta-subunit /FL=gb:M69056.1 M69056 farnesyltransferase, CAAX box, beta Fntb 64511 NM_172034 0008152 // metabolic process // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010035 // response to inorganic substance // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from mutant phenotype /// 0018343 // protein farnesylation // not recorded /// 0034097 // response to cytokine stimulus // inferred from mutant phenotype /// 0042060 // wound healing // not recorded /// 0045787 // positive regulation of cell cycle // inferred from mutant phenotype /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0051773 // positive regulation of nitric-oxide synthase 2 biosynthetic process // inferred from mutant phenotype 0005875 // microtubule associated complex // not recorded /// 0043234 // protein complex // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004311 // farnesyltranstransferase activity // not recorded /// 0004659 // prenyltransferase activity // inferred from electronic annotation /// 0004660 // protein farnesyltransferase activity // inferred from direct assay /// 0004660 // protein farnesyltransferase activity // not recorded /// 0004660 // protein farnesyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008144 // drug binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0019840 // isoprenoid binding // inferred from direct assay /// 0042277 // peptide binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1370830_at M37394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M37394.2 /DB_XREF=gi:6478867 /GEN=Egfr /FEA=FLmRNA /CNT=8 /TID=Rn.37227.2 /TIER=FL+Stack /STK=6 /UG=Rn.37227 /LL=24329 /DEF=Rattus norvegicus epidermal growth factor receptor (Egfr) mRNA, complete cds. /PROD=epidermal growth factor receptor /FL=gb:M37394.2 M37394 epidermal growth factor receptor Egfr 24329 NM_031507 0000186 // activation of MAPKK activity // inferred from mutant phenotype /// 0000902 // cell morphogenesis // not recorded /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0001892 // embryonic placenta development // not recorded /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0001942 // hair follicle development // not recorded /// 0001942 // hair follicle development // inferred from electronic annotation /// 0006412 // translation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006970 // response to osmotic stress // inferred from expression pattern /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0007165 // signal transduction // inferred from direct assay /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from direct assay /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from mutant phenotype /// 0007173 // epidermal growth factor receptor signaling pathway // not recorded /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from direct assay /// 0007435 // salivary gland morphogenesis // not recorded /// 0007435 // salivary gland morphogenesis // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008544 // epidermis development // not recorded /// 0008544 // epidermis development // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0021795 // cerebral cortex cell migration // not recorded /// 0021795 // cerebral cortex cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0031659 // positive regulation of cyclin-dependent protein kinase activity involved in G1/S // not recorded /// 0031659 // positive regulation of cyclin-dependent protein kinase activity involved in G1/S // inferred from electronic annotation /// 0033993 // response to lipid // inferred from expression pattern /// 0035413 // positive regulation of catenin protein nuclear translocation // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042327 // positive regulation of phosphorylation // not recorded /// 0042327 // positive regulation of phosphorylation // inferred from electronic annotation /// 0042698 // ovulation cycle // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0043406 // positive regulation of MAP kinase activity // not recorded /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0043586 // tongue development // inferred from expression pattern /// 0045429 // positive regulation of nitric oxide biosynthetic process // not recorded /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045930 // negative regulation of mitotic cell cycle // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0048143 // astrocyte activation // inferred from mutant phenotype /// 0048546 // digestive tract morphogenesis // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0048812 // neuron projection morphogenesis // inferred from mutant phenotype /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050999 // regulation of nitric-oxide synthase activity // not recorded /// 0050999 // regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from mutant phenotype /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype /// 0060571 // morphogenesis of an epithelial fold // not recorded /// 0060571 // morphogenesis of an epithelial fold // inferred from electronic annotation /// 0070141 // response to UV-A // not recorded /// 0070141 // response to UV-A // inferred from electronic annotation 0005622 // intracellular // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030139 // endocytic vesicle // inferred from direct assay /// 0030139 // endocytic vesicle // not recorded /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0070435 // Shc-EGFR complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004716 // receptor signaling protein tyrosine kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // not recorded /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005006 // epidermal growth factor receptor activity // inferred from direct assay /// 0005006 // epidermal growth factor receptor activity // inferred from mutant phenotype /// 0005006 // epidermal growth factor receptor activity // not recorded /// 0005006 // epidermal growth factor receptor activity // traceable author statement /// 0005006 // epidermal growth factor receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019903 // protein phosphatase binding // not recorded /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0030235 // nitric-oxide synthase regulator activity // not recorded /// 0030235 // nitric-oxide synthase regulator activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0048408 // epidermal growth factor binding // inferred from mutant phenotype /// 0051015 // actin filament binding // not recorded /// 0051015 // actin filament binding // inferred from electronic annotation 1370831_at AY081195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY081195.1 /DB_XREF=gi:19697885 /GEN=Mgl2 /FEA=FLmRNA /CNT=11 /TID=Rn.22922.1 /TIER=FL /STK=3 /UG=Rn.22922 /DEF=Rattus norvegicus monoglyceride lipase (Mgl2) mRNA, complete cds. /PROD=monoglyceride lipase /FL=gb:AY081195.1 AY081195 monoglyceride lipase Mgll 29254 NM_138502 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0019369 // arachidonic acid metabolic process // inferred from sequence or structural similarity /// 0035466 // regulation of signaling pathway // inferred from sequence or structural similarity /// 0046464 // acylglycerol catabolic process // inferred from sequence or structural similarity /// 0050727 // regulation of inflammatory response // inferred from sequence or structural similarity /// 0051930 // regulation of sensory perception of pain // inferred from sequence or structural similarity 0045202 // synapse // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0008289 // lipid binding // inferred from mutant phenotype /// 0016787 // hydrolase activity // inferred from direct assay /// 0016787 // hydrolase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0047372 // acylglycerol lipase activity // inferred from sequence or structural similarity /// 0047372 // acylglycerol lipase activity // inferred from electronic annotation 1370832_at U06434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U06434.1 /DB_XREF=gi:459147 /GEN=MIP-1 beta /FEA=FLmRNA /CNT=5 /TID=Rn.37880.1 /TIER=FL /STK=3 /UG=Rn.37880 /LL=116637 /DEF=Rattus norvegicus macrophage inflammatory protein-1 beta (MIP-1 beta) mRNA, complete cds. /PROD=macrophage inflammatory protein-1 beta /FL=gb:U06434.1 U06434 chemokine (C-C motif) ligand 4 Ccl4 116637 NM_053858 0006935 // chemotaxis // inferred from direct assay /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from direct assay /// 0006954 // inflammatory response // inferred from expression pattern /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0043114 // regulation of vascular permeability // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008009 // chemokine activity // inferred from direct assay /// 0008009 // chemokine activity // inferred from electronic annotation 1370833_at AF324454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF324454.1 /DB_XREF=gi:13751760 /FEA=FLmRNA /CNT=6 /TID=Rn.51337.1 /TIER=FL /STK=2 /UG=Rn.51337 /DEF=Rattus norvegicus TPR-containing Rab8b-interacting protein mRNA, complete cds. /PROD=TPR-containing Rab8b-interacting protein /FL=gb:AF324454.1 AF324454 peroxisomal biogenesis factor 5-like Pex5l 286937 NM_173152 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded /// 0043949 // regulation of cAMP-mediated signaling // inferred from direct assay /// 0043949 // regulation of cAMP-mediated signaling // inferred from sequence or structural similarity /// 0045055 // regulated secretory pathway // inferred from direct assay /// 0045185 // maintenance of protein location // inferred from electronic annotation /// 0045185 // maintenance of protein location // not recorded /// 0051461 // positive regulation of adrenocorticotropin secretion // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0017071 // intracellular cyclic nucleotide activated cation channel complex // inferred from direct assay /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0051286 // cell tip // inferred from direct assay 0005221 // intracellular cyclic nucleotide activated cation channel activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017137 // Rab GTPase binding // inferred from physical interaction 1370834_at AF177430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF177430.1 /DB_XREF=gi:9957243 /FEA=FLmRNA /CNT=7 /TID=Rn.17364.1 /TIER=FL /STK=1 /UG=Rn.17364 /LL=84406 /UG_GENE=Hs3st1 /DEF=Rattus norvegicus 3-O-sulfotransferase mRNA, complete cds. /PROD=3-O-sulfotransferase /FL=gb:AF177430.1 AF177430 heparan sulfate (glucosamine) 3-O-sulfotransferase 1 Hs3st1 84406 NM_053391 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005796 // Golgi lumen // inferred from electronic annotation 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0008467 // [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity // non-traceable author statement /// 0008467 // [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1370835_at AF267197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF267197.1 /DB_XREF=gi:12656265 /FEA=FLmRNA /CNT=9 /TID=Rn.24521.1 /TIER=FL /STK=1 /UG=Rn.24521 /DEF=Rattus norvegicus epidermal Langerhans cell protein LCP1 mRNA, complete cds. /PROD=epidermal Langerhans cell protein LCP1 /FL=gb:AF267197.1 AF267197 TOX high mobility group box family member 4 Tox4 286990 NM_173324 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0003677 // DNA binding // inferred from electronic annotation 1370836_at U51017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U51017.1 /DB_XREF=gi:1762151 /FEA=FLmRNA /CNT=2 /TID=Rn.11152.1 /TIER=FL /STK=1 /UG=Rn.11152 /DEF=Rattus norvegicus kallistatin mRNA, complete cds. /PROD=kallistatin /FL=gb:U51017.1 U51017 serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4 Serpina4 246328 NM_145097 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation 1370837_at AF008197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF008197.1 /DB_XREF=gi:2258436 /FEA=FLmRNA /CNT=8 /TID=Rn.11220.1 /TIER=FL /STK=0 /UG=Rn.11220 /DEF=Rattus norvegicus syncollin mRNA, complete cds. /PROD=syncollin /FL=gb:AF008197.1 AF008197 syncollin Sycn 245917 NM_139086 0006887 // exocytosis // inferred from electronic annotation /// 0017158 // regulation of calcium ion-dependent exocytosis // traceable author statement 0016020 // membrane // inferred from electronic annotation /// 0030658 // transport vesicle membrane // inferred from electronic annotation /// 0030667 // secretory granule membrane // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 1370838_s_at BM387423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387423 /DB_XREF=gi:18187476 /DB_XREF=UI-R-CN1-cjj-a-10-0-UI.s1 /CLONE=UI-R-CN1-cjj-a-10-0-UI /FEA=mRNA /CNT=32 /TID=Rn.82716.1 /TIER=Stack /STK=24 /UG=Rn.82716 /LL=64159 /UG_GENE=Spna2 /UG_TITLE=noerythroid alpha-spectrin 2 BM387423 alpha-spectrin 2 Spna2 64159 NM_171983 0031532 // actin cytoskeleton reorganization // inferred from mutant phenotype /// 0051693 // actin filament capping // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005916 // fascia adherens // not recorded /// 0005916 // fascia adherens // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0008091 // spectrin // traceable author statement /// 0015630 // microtubule cytoskeleton // not recorded /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // not recorded /// 0016328 // lateral plasma membrane // inferred from electronic annotation /// 0030018 // Z disc // not recorded /// 0030018 // Z disc // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // not recorded /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0032437 // cuticular plate // not recorded /// 0032437 // cuticular plate // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0019905 // syntaxin binding // inferred from physical interaction /// 0030507 // spectrin binding // not recorded /// 0030507 // spectrin binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction 1370839_at AF013598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF013598.1 /DB_XREF=gi:2352948 /FEA=FLmRNA /CNT=7 /TID=Rn.24225.1 /TIER=FL /STK=0 /UG=Rn.24225 /DEF=Rattus norvegicus proton gated cation channel DRASIC mRNA, complete cds. /PROD=proton gated cation channel DRASIC /FL=gb:AF013598.1 AF013598 amiloride-sensitive cation channel 3 Accn3 286920 NM_173135 0001101 // response to acid // inferred from direct assay /// 0001101 // response to acid // inferred from electronic annotation /// 0001101 // response to acid // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from mutant phenotype /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0009408 // response to heat // inferred from electronic annotation /// 0009408 // response to heat // not recorded /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0050907 // detection of chemical stimulus involved in sensory perception // not recorded /// 0050907 // detection of chemical stimulus involved in sensory perception // inferred from electronic annotation /// 0050961 // detection of temperature stimulus involved in sensory perception // not recorded /// 0050961 // detection of temperature stimulus involved in sensory perception // inferred from electronic annotation /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // inferred from electronic annotation /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // not recorded /// 0050966 // detection of mechanical stimulus involved in sensory perception of pain // inferred from electronic annotation /// 0050966 // detection of mechanical stimulus involved in sensory perception of pain // not recorded /// 0050968 // detection of chemical stimulus involved in sensory perception of pain // inferred from electronic annotation /// 0050968 // detection of chemical stimulus involved in sensory perception of pain // not recorded /// 0050974 // detection of mechanical stimulus involved in sensory perception // not recorded /// 0050974 // detection of mechanical stimulus involved in sensory perception // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // not recorded /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0015280 // ligand-gated sodium channel activity // inferred from direct assay /// 0015280 // ligand-gated sodium channel activity // inferred from mutant phenotype /// 0015280 // ligand-gated sodium channel activity // inferred from electronic annotation 1370840_at U21116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U21116.1 /DB_XREF=gi:755492 /FEA=FLmRNA /CNT=3 /TID=Rn.80843.2 /TIER=FL /STK=0 /UG=Rn.80843 /LL=25558 /UG_GENE=Stxbp1 /DEF=Rattus norvegicus rbSec1B mRNA, complete cds. /PROD=rbSec1B /FL=gb:U21116.1 U21116 syntaxin binding protein 1 Stxbp1 25558 NM_013038 0002576 // platelet degranulation // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // not recorded /// 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation /// 0006904 // vesicle docking involved in exocytosis // not recorded /// 0007269 // neurotransmitter secretion // not recorded /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0007412 // axon target recognition // not recorded /// 0010807 // regulation of synaptic vesicle priming // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016188 // synaptic vesicle maturation // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0032229 // negative regulation of synaptic transmission, GABAergic // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0050821 // protein stabilization // inferred from direct assay /// 0060292 // long term synaptic depression // not recorded /// 0070527 // platelet aggregation // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031091 // platelet alpha granule // not recorded /// 0043234 // protein complex // inferred from direct assay 0000149 // SNARE binding // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0017075 // syntaxin-1 binding // inferred from direct assay /// 0017075 // syntaxin-1 binding // not recorded /// 0019904 // protein domain specific binding // inferred from direct assay /// 0019905 // syntaxin binding // inferred from direct assay /// 0030347 // syntaxin-2 binding // not recorded /// 0042802 // identical protein binding // inferred from physical interaction /// 0047485 // protein N-terminus binding // inferred from direct assay 1370841_a_at V01238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:V01238 /DB_XREF=gi:56320 /FEA=DNA /CNT=1 /TID=Rn.10268.5 /TIER=ConsEnd /STK=0 /UG=Rn.10268 /LL=81668 /UG_GENE=Gnrhr /UG_TITLE=gonadotropin-releasing hormone receptor /DEF=Rat gene for growth hormone (presomatotropin) V01238 growth hormone 1 Gh1 24391 NM_001034848 0002092 // positive regulation of receptor internalization // not recorded /// 0007165 // signal transduction // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007259 // JAK-STAT cascade // not recorded /// 0007405 // neuroblast proliferation // inferred from direct assay /// 0007565 // female pregnancy // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0009416 // response to light stimulus // inferred from direct assay /// 0010535 // positive regulation of activation of JAK2 kinase activity // not recorded /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0015758 // glucose transport // not recorded /// 0032094 // response to food // inferred from electronic annotation /// 0032094 // response to food // not recorded /// 0032355 // response to estradiol stimulus // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // not recorded /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0040008 // regulation of growth // traceable author statement /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // not recorded /// 0042523 // positive regulation of tyrosine phosphorylation of Stat5 protein // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0043526 // neuroprotection // inferred from direct assay /// 0043568 // positive regulation of insulin-like growth factor receptor signaling pathway // not recorded /// 0045597 // positive regulation of cell differentiation // traceable author statement /// 0045927 // positive regulation of growth // inferred from mutant phenotype /// 0046427 // positive regulation of JAK-STAT cascade // not recorded /// 0048286 // lung alveolus development // inferred from mutant phenotype /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050769 // positive regulation of neurogenesis // inferred from direct assay /// 0060396 // growth hormone receptor signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay /// 0030141 // stored secretory granule // not recorded /// 0030141 // stored secretory granule // inferred from electronic annotation 0005131 // growth hormone receptor binding // inferred from direct assay /// 0005131 // growth hormone receptor binding // not recorded /// 0005131 // growth hormone receptor binding // traceable author statement /// 0005131 // growth hormone receptor binding // inferred from electronic annotation /// 0005148 // prolactin receptor binding // not recorded /// 0005179 // hormone activity // inferred from direct assay /// 0005179 // hormone activity // traceable author statement /// 0005179 // hormone activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // not recorded /// 0016520 // growth hormone-releasing hormone receptor activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1370842_at BI277527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277527 /DB_XREF=gi:14923488 /DB_XREF=UI-R-CY0-bxs-c-05-0-UI.s1 /CLONE=UI-R-CY0-bxs-c-05-0-UI /FEA=FLmRNA /CNT=18 /TID=Rn.31976.1 /TIER=Stack /STK=12 /UG=Rn.31976 /LL=29603 /UG_GENE=Bckdk /UG_TITLE=branched chain keto acid dehydrogenase kinase /FL=gb:M93271.1 BI277527 branched chain ketoacid dehydrogenase kinase Bckdk 29603 NM_019244 0007165 // signal transduction // inferred from electronic annotation /// 0009083 // branched chain family amino acid catabolic process // inferred from direct assay /// 0009083 // branched chain family amino acid catabolic process // traceable author statement /// 0016310 // phosphorylation // inferred from direct assay /// 0016310 // phosphorylation // not recorded /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018106 // peptidyl-histidine phosphorylation // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005947 // mitochondrial alpha-ketoglutarate dehydrogenase complex // inferred from direct assay 0000155 // two-component sensor activity // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004673 // protein histidine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0047323 // [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase activity // inferred from mutant phenotype /// 0047323 // [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase activity // traceable author statement /// 0047323 // [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase activity // inferred from electronic annotation 1370843_at BM391912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391912 /DB_XREF=gi:18191965 /DB_XREF=UI-R-DM1-ckc-d-23-0-UI.s2 /CLONE=UI-R-DM1-ckc-d-23-0-UI /FEA=FLmRNA /CNT=12 /TID=Rn.11233.1 /TIER=Stack /STK=10 /UG=Rn.11233 /UG_TITLE=Rattus norvegicus GTP-binding protein gamma subunit (Ggamma8) mRNA, complete cds /FL=gb:L35921.1 BM391912 guanine nucleotide binding protein (G protein), gamma 8 Gng8 245986 NM_139185 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007399 // nervous system development // inferred from expression pattern /// 0009755 // hormone-mediated signaling pathway // not recorded 0005834 // heterotrimeric G-protein complex // traceable author statement /// 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation 1370844_at BM387425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387425 /DB_XREF=gi:18187478 /DB_XREF=UI-R-CN1-cjj-a-14-0-UI.s1 /CLONE=UI-R-CN1-cjj-a-14-0-UI /FEA=FLmRNA /CNT=48 /TID=Rn.864.1 /TIER=Stack /STK=9 /UG=Rn.864 /LL=64200 /UG_GENE=Hnrpf /UG_TITLE=ribonucleoprotein F /FL=gb:AB022209.1 BM387425 heterogeneous nuclear ribonucleoprotein F Hnrnpf 64200 NM_001037285 /// NM_001037286 /// NM_001037287 /// NM_022397 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0008380 // RNA splicing // inferred from electronic annotation /// 0043484 // regulation of RNA splicing // not recorded /// 0043484 // regulation of RNA splicing // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003727 // single-stranded RNA binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0017025 // TATA-binding protein binding // inferred from physical interaction 1370845_at BI288690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288690 /DB_XREF=gi:14945522 /DB_XREF=UI-R-DK0-cdd-g-09-0-UI.s1 /CLONE=UI-R-DK0-cdd-g-09-0-UI /FEA=FLmRNA /CNT=13 /TID=Rn.8276.1 /TIER=Stack /STK=9 /UG=Rn.8276 /LL=64467 /UG_GENE=Entpd2 /UG_TITLE=ectonucleoside triphosphate diphosphohydrolase 2 /FL=gb:AF276940.1 BI288690 ectonucleoside triphosphate diphosphohydrolase 2 Entpd2 64467 NM_172030 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0009181 // purine ribonucleoside diphosphate catabolic process // not recorded /// 0009181 // purine ribonucleoside diphosphate catabolic process // inferred from electronic annotation /// 0030168 // platelet activation // not recorded /// 0030168 // platelet activation // inferred from electronic annotation 0005605 // basal lamina // not recorded /// 0005605 // basal lamina // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017110 // nucleoside-diphosphatase activity // not recorded /// 0017110 // nucleoside-diphosphatase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // not recorded /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1370846_at BI285266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285266 /DB_XREF=gi:14938729 /DB_XREF=UI-R-DB0-byy-a-12-0-UI.s1 /CLONE=UI-R-DB0-byy-a-12-0-UI /FEA=FLmRNA /CNT=45 /TID=Rn.10041.1 /TIER=Stack /STK=8 /UG=Rn.10041 /UG_TITLE=Rat prostatic 22-kD glycoprotein mRNA, complete cds /FL=gb:M58169.1 BI285266 cystatin related protein 2 P22k15 296229 NM_199266 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1370847_at AA801238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA801238 /DB_XREF=gi:2864193 /DB_XREF=EST190735 /CLONE=RPLAB42 /FEA=FLmRNA /CNT=13 /TID=Rn.6699.1 /TIER=Stack /STK=8 /UG=Rn.6699 /LL=171569 /UG_GENE=LOC171569 /UG_TITLE=F-spondin /FL=gb:AF155196.1 AA801238 spondin 2, extracellular matrix protein Spon2 171569 NM_138533 0007155 // cell adhesion // inferred from direct assay /// 0007155 // cell adhesion // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // traceable author statement 0005102 // receptor binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1370848_at BI284218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284218 /DB_XREF=gi:14936701 /DB_XREF=UI-R-CX0s-ccn-f-02-0-UI.s1 /CLONE=UI-R-CX0s-ccn-f-02-0-UI /FEA=FLmRNA /CNT=31 /TID=Rn.3205.1 /TIER=Stack /STK=6 /UG=Rn.3205 /UG_TITLE=Rat brain glucose-transporter protein mRNA, complete cds /FL=gb:M13979.1 BI284218 solute carrier family 2 (facilitated glucose transporter), member 1 Slc2a1 24778 NM_138827 0006810 // transport // inferred from electronic annotation /// 0006970 // response to osmotic stress // inferred from expression pattern /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0015758 // glucose transport // inferred from direct assay /// 0015758 // glucose transport // not recorded /// 0015758 // glucose transport // traceable author statement /// 0035428 // hexose transmembrane transport // not recorded /// 0042908 // xenobiotic transport // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055085 // transmembrane transport // not recorded /// 0070837 // dehydroascorbic acid transport // inferred from direct assay /// 0070837 // dehydroascorbic acid transport // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0005911 // cell-cell junction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0042470 // melanosome // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005351 // sugar:hydrogen symporter activity // traceable author statement /// 0005355 // glucose transmembrane transporter activity // inferred from direct assay /// 0005355 // glucose transmembrane transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019900 // kinase binding // inferred from physical interaction /// 0022891 // substrate-specific transmembrane transporter activity // inferred from electronic annotation /// 0033300 // dehydroascorbic acid transporter activity // inferred from direct assay /// 0033300 // dehydroascorbic acid transporter activity // not recorded /// 0042910 // xenobiotic transporter activity // inferred from direct assay /// 0055056 // D-glucose transmembrane transporter activity // inferred from direct assay /// 0055056 // D-glucose transmembrane transporter activity // not recorded 1370849_at AI145465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145465 /DB_XREF=gi:3667264 /DB_XREF=UI-R-BT0-pv-h-08-0-UI.s1 /CLONE=UI-R-BT0-pv-h-08-0-UI /FEA=FLmRNA /CNT=18 /TID=Rn.22198.1 /TIER=Stack /STK=16 /UG=Rn.22198 /LL=64057 /UG_GENE=Bral1 /UG_TITLE=brain link protein 1 /FL=gb:AB049056.1 AI145465 hyaluronan and proteoglycan link protein 2 Hapln2 64057 NM_022285 0007155 // cell adhesion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // inferred from electronic annotation 1370850_at AA685184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA685184 /DB_XREF=gi:2671782 /DB_XREF=EST106496 /CLONE=RPCBD28 /FEA=FLmRNA /CNT=41 /TID=Rn.3402.1 /TIER=Stack /STK=9 /UG=Rn.3402 /UG_TITLE=Rattus norvegicus sodium channel beta 3 subunit (Scnb3) mRNA, complete cds /FL=gb:AF378093.1 AA685184 sodium channel, voltage-gated, type III, beta Scn3b 245956 NM_139097 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0007399 // nervous system development // inferred from expression pattern /// 0019233 // sensory perception of pain // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // inferred from electronic annotation 1370851_a_at AI639313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639313 /DB_XREF=gi:4700347 /DB_XREF=rx04777s /CLONE=rx04777 /FEA=FLmRNA /CNT=10 /TID=Rn.10709.5 /TIER=Stack /STK=8 /UG=Rn.10709 /LL=84009 /UG_GENE=Hapip /UG_TITLE=huntingtin-associated protein interacting protein (duo) /FL=gb:AF232668.1 AI639313 kalirin, RhoGEF kinase Kalrn 84009 NM_032062 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007399 // nervous system development // inferred from direct assay /// 0007409 // axonogenesis // inferred from direct assay /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0016192 // vesicle-mediated transport // inferred from direct assay /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0050773 // regulation of dendrite development // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // traceable author statement /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370852_at AA851958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851958 /DB_XREF=gi:2939498 /DB_XREF=EST194727 /CLONE=RSPAO81 /FEA=FLmRNA /CNT=11 /TID=Rn.8438.1 /TIER=Stack /STK=7 /UG=Rn.8438 /LL=171573 /UG_GENE=LOC171573 /UG_TITLE=spleen protein 1 precursor /FL=gb:AF198442.1 AA851958 spleen protein 1 precursor LOC171573 171573 NM_138537 0005576 // extracellular region // inferred from electronic annotation 1370853_at AA858621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858621 /DB_XREF=gi:4229952 /DB_XREF=UI-R-E0-bq-b-10-0-UI.s1 /CLONE=UI-R-E0-bq-b-10-0-UI /FEA=FLmRNA /CNT=10 /TID=Rn.81198.1 /TIER=Stack /STK=6 /UG=Rn.81198 /UG_TITLE=Rattus norvegicus CaM-kinase II inhibitor alpha mRNA, complete cds /FL=gb:AF271156.1 AA858621 calcium/calmodulin-dependent protein kinase II inhibitor 1 Camk2n1 287005 NM_173337 0007268 // synaptic transmission // inferred by curator /// 0042326 // negative regulation of phosphorylation // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0014069 // postsynaptic density // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004860 // protein kinase inhibitor activity // not recorded /// 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0008427 // calcium-dependent protein kinase inhibitor activity // inferred from direct assay /// 0019901 // protein kinase binding // inferred from direct assay /// 0019901 // protein kinase binding // inferred from physical interaction 1370854_at AA799423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799423 /DB_XREF=gi:2862378 /DB_XREF=EST188920 /CLONE=RHEAA88 /FEA=FLmRNA /CNT=28 /TID=Rn.12358.2 /TIER=ConsEnd /STK=5 /UG=Rn.12358 /UG_TITLE=Rattus norvegicus F-actin binding protein b-Nexilin mRNA, complete cds /FL=gb:AF056035.1 AA799423 nexilin (F actin binding protein) Nexn 246172 NM_139230 /// NM_139231 0030334 // regulation of cell migration // not recorded /// 0030334 // regulation of cell migration // inferred from sequence or structural similarity /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0051493 // regulation of cytoskeleton organization // not recorded /// 0051493 // regulation of cytoskeleton organization // inferred from sequence or structural similarity /// 0051493 // regulation of cytoskeleton organization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005912 // adherens junction // inferred from electronic annotation /// 0005924 // cell-substrate adherens junction // inferred from direct assay /// 0005924 // cell-substrate adherens junction // inferred from physical interaction /// 0030018 // Z disc // inferred from direct assay /// 0030018 // Z disc // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0008307 // structural constituent of muscle // inferred from sequence or structural similarity /// 0051015 // actin filament binding // inferred from direct assay /// 0051015 // actin filament binding // not recorded /// 0051015 // actin filament binding // inferred from electronic annotation 1370855_at BG666933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666933 /DB_XREF=gi:13888855 /DB_XREF=DRACRE01 /CLONE=DRACRE01 /FEA=mRNA /CNT=201 /TID=Rn.956.1 /TIER=Stack /STK=145 /UG=Rn.956 /LL=25307 /UG_GENE=Cst3 /UG_TITLE=Cystatin C (cysteine proteinase inhibitor) BG666933 cystatin C Cst3 25307 NM_012837 0001654 // eye development // inferred from expression pattern /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001775 // cell activation // inferred from expression pattern /// 0006915 // apoptosis // inferred from expression pattern /// 0006952 // defense response // not recorded /// 0006979 // response to oxidative stress // inferred from mutant phenotype /// 0007420 // brain development // inferred from expression pattern /// 0007431 // salivary gland development // inferred from expression pattern /// 0007566 // embryo implantation // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008584 // male gonad development // inferred from expression pattern /// 0009636 // response to toxin // inferred from expression pattern /// 0009743 // response to carbohydrate stimulus // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010466 // negative regulation of peptidase activity // not recorded /// 0010711 // negative regulation of collagen catabolic process // not recorded /// 0010716 // negative regulation of extracellular matrix disassembly // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0034103 // regulation of tissue remodeling // not recorded /// 0034599 // cellular response to oxidative stress // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042747 // circadian sleep/wake cycle, REM sleep // inferred from expression pattern /// 0043067 // regulation of programmed cell death // inferred from mutant phenotype /// 0043206 // fibril organization // not recorded /// 0045740 // positive regulation of DNA replication // inferred from direct assay /// 0048678 // response to axon injury // inferred from expression pattern /// 0050896 // response to stimulus // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0060009 // Sertoli cell development // inferred from expression pattern /// 0060311 // negative regulation of elastin catabolic process // not recorded /// 0060313 // negative regulation of blood vessel remodeling // not recorded /// 0060548 // negative regulation of cell death // inferred from mutant phenotype /// 0070301 // cellular response to hydrogen peroxide // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005604 // basement membrane // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005771 // multivesicular body // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay /// 0031982 // vesicle // inferred from direct assay /// 0033267 // axon part // inferred from direct assay /// 0042995 // cell projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043292 // contractile fiber // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0001540 // beta-amyloid binding // not recorded /// 0002020 // protease binding // inferred from direct assay /// 0002020 // protease binding // not recorded /// 0004869 // cysteine-type endopeptidase inhibitor activity // not recorded /// 0004869 // cysteine-type endopeptidase inhibitor activity // traceable author statement /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0030414 // peptidase inhibitor activity // inferred from direct assay /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1370856_at AA800705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800705 /DB_XREF=gi:4131533 /DB_XREF=EST190202 /CLONE=RLUAK48 /FEA=mRNA /CNT=137 /TID=Rn.3114.1 /TIER=Stack /STK=131 /UG=Rn.3114 /LL=29275 /UG_GENE=Actc1 /UG_TITLE=Actin, alpha, cardiac AA800705 actin, alpha, cardiac muscle 1 Actc1 29275 NM_019183 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006936 // muscle contraction // inferred from direct assay /// 0030048 // actin filament-based movement // inferred from electronic annotation /// 0030048 // actin filament-based movement // not recorded /// 0030240 // skeletal muscle thin filament assembly // inferred from electronic annotation /// 0030240 // skeletal muscle thin filament assembly // not recorded /// 0031032 // actomyosin structure organization // inferred from electronic annotation /// 0031032 // actomyosin structure organization // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0055003 // cardiac myofibril assembly // inferred from electronic annotation /// 0055003 // cardiac myofibril assembly // not recorded /// 0055008 // cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055008 // cardiac muscle tissue morphogenesis // not recorded /// 0060047 // heart contraction // not recorded /// 0060047 // heart contraction // inferred from electronic annotation /// 0060048 // cardiac muscle contraction // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // not recorded /// 0005884 // actin filament // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0030017 // sarcomere // not recorded /// 0030017 // sarcomere // inferred from electronic annotation /// 0031674 // I band // inferred from electronic annotation /// 0031674 // I band // not recorded /// 0042643 // actomyosin, actin part // inferred from electronic annotation /// 0042643 // actomyosin, actin part // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0017022 // myosin binding // inferred from electronic annotation /// 0017022 // myosin binding // not recorded 1370857_at BI282702 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282702 /DB_XREF=gi:14933735 /DB_XREF=UI-R-CW0s-cce-b-11-0-UI.s1 /CLONE=UI-R-CW0s-cce-b-11-0-UI /FEA=mRNA /CNT=104 /TID=Rn.6321.1 /TIER=Stack /STK=60 /UG=Rn.6321 /LL=81633 /UG_GENE=Acta2 /UG_TITLE=smooth muscle alpha-actin BI282702 smooth muscle alpha-actin Acta2 81633 NM_031004 0006915 // apoptosis // inferred from electronic annotation /// 0006936 // muscle contraction // inferred from direct assay /// 0030048 // actin filament-based movement // inferred from electronic annotation /// 0030240 // skeletal muscle thin filament assembly // inferred from electronic annotation /// 0031032 // actomyosin structure organization // inferred from electronic annotation /// 0055003 // cardiac myofibril assembly // inferred from electronic annotation /// 0055008 // cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0060047 // heart contraction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0030017 // sarcomere // inferred from electronic annotation /// 0031674 // I band // inferred from electronic annotation /// 0042643 // actomyosin, actin part // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017022 // myosin binding // inferred from electronic annotation 1370858_at BI285057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285057 /DB_XREF=gi:14938322 /DB_XREF=UI-R-DB0-byv-f-12-0-UI.s1 /CLONE=UI-R-DB0-byv-f-12-0-UI /FEA=mRNA /CNT=64 /TID=Rn.10393.1 /TIER=Stack /STK=47 /UG=Rn.10393 /UG_TITLE=Rat messenger RNA for prostatic steroid binding protein (subunit C1) BI285057 prostatic steroid binding protein C1 Psbpc1 309203 NM_177482 0005576 // extracellular region // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005496 // steroid binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation 1370859_at BI284965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284965 /DB_XREF=gi:14938138 /DB_XREF=UI-R-DB0-byu-f-04-0-UI.s1 /CLONE=UI-R-DB0-byu-f-04-0-UI /FEA=mRNA /CNT=59 /TID=Rn.2685.1 /TIER=Stack /STK=47 /UG=Rn.2685 /UG_TITLE=R.norvegicus (Wistar) CaBP1 mRNA BI284965 protein disulfide isomerase family A, member 6 Pdia6 286906 NM_001004442 0006457 // protein folding // traceable author statement /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0005793 // ER-Golgi intermediate compartment // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0003756 // protein disulfide isomerase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // traceable author statement /// 0005515 // protein binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation 1370860_at BI280607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280607 /DB_XREF=gi:14929558 /DB_XREF=UI-R-DC0-bzm-d-12-0-UI.s1 /CLONE=UI-R-DC0-bzm-d-12-0-UI /FEA=mRNA /CNT=44 /TID=Rn.56148.1 /TIER=Stack /STK=43 /UG=Rn.56148 /UG_TITLE=Rattus norvegicus androgen-responsive mRNA, clone:pSv-2 BI280607 seminal vesicle secretory protein 1 Svs1 297081 NM_199095 0009308 // amine metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005507 // copper ion binding // inferred from electronic annotation /// 0008131 // primary amine oxidase activity // inferred from electronic annotation /// 0048038 // quinone binding // inferred from electronic annotation 1370861_at BI282326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282326 /DB_XREF=gi:14932983 /DB_XREF=UI-R-CU0s-cbz-c-09-0-UI.s1 /CLONE=UI-R-CU0s-cbz-c-09-0-UI /FEA=mRNA /CNT=57 /TID=Rn.880.1 /TIER=Stack /STK=34 /UG=Rn.880 /LL=25282 /UG_GENE=Cox6a1 /UG_TITLE=Cytochrome c oxidase subunit VIa (liver) BI282326 cytochrome c oxidase, subunit VIa, polypeptide 1 Cox6a1 25282 NM_012814 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005751 // mitochondrial respiratory chain complex IV // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation 1370862_at J02582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J02582 /DB_XREF=gi:202957 /FEA=mRNA /CNT=49 /TID=Rn.32351.1 /TIER=Stack /STK=33 /UG=Rn.32351 /UG_TITLE=Rat apolipoprotein e mrna /DEF=Rat apolipoprotein E gene, complete cds J02582 apolipoprotein E Apoe 25728 NM_138828 0001937 // negative regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0002021 // response to dietary excess // inferred from electronic annotation /// 0002021 // response to dietary excess // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // not recorded /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // not recorded /// 0006707 // cholesterol catabolic process // inferred from electronic annotation /// 0006707 // cholesterol catabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from direct assay /// 0006869 // lipid transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from sequence or structural similarity /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007263 // nitric oxide mediated signal transduction // inferred from electronic annotation /// 0007263 // nitric oxide mediated signal transduction // not recorded /// 0007568 // aging // inferred from direct assay /// 0008104 // protein localization // not recorded /// 0008203 // cholesterol metabolic process // not recorded /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0010544 // negative regulation of platelet activation // inferred from electronic annotation /// 0010544 // negative regulation of platelet activation // not recorded /// 0010873 // positive regulation of cholesterol esterification // inferred from electronic annotation /// 0010873 // positive regulation of cholesterol esterification // not recorded /// 0010875 // positive regulation of cholesterol efflux // inferred from electronic annotation /// 0010875 // positive regulation of cholesterol efflux // not recorded /// 0014012 // peripheral nervous system axon regeneration // inferred from expression pattern /// 0019934 // cGMP-mediated signaling // inferred from electronic annotation /// 0019934 // cGMP-mediated signaling // not recorded /// 0030195 // negative regulation of blood coagulation // not recorded /// 0030195 // negative regulation of blood coagulation // inferred from electronic annotation /// 0030828 // positive regulation of cGMP biosynthetic process // inferred from electronic annotation /// 0030828 // positive regulation of cGMP biosynthetic process // not recorded /// 0031102 // neuron projection regeneration // traceable author statement /// 0031103 // axon regeneration // not recorded /// 0032488 // Cdc42 protein signal transduction // inferred from electronic annotation /// 0032488 // Cdc42 protein signal transduction // not recorded /// 0032805 // positive regulation of low-density lipoprotein receptor catabolic process // inferred from electronic annotation /// 0032805 // positive regulation of low-density lipoprotein receptor catabolic process // not recorded /// 0033344 // cholesterol efflux // not recorded /// 0033344 // cholesterol efflux // inferred from electronic annotation /// 0033700 // phospholipid efflux // inferred from electronic annotation /// 0033700 // phospholipid efflux // not recorded /// 0034372 // very-low-density lipoprotein particle remodeling // inferred from electronic annotation /// 0034372 // very-low-density lipoprotein particle remodeling // not recorded /// 0034374 // low-density lipoprotein particle remodeling // inferred from electronic annotation /// 0034374 // low-density lipoprotein particle remodeling // not recorded /// 0034375 // high-density lipoprotein particle remodeling // inferred from electronic annotation /// 0034375 // high-density lipoprotein particle remodeling // not recorded /// 0034380 // high-density lipoprotein particle assembly // inferred from electronic annotation /// 0034380 // high-density lipoprotein particle assembly // not recorded /// 0034382 // chylomicron remnant clearance // inferred from electronic annotation /// 0034382 // chylomicron remnant clearance // not recorded /// 0034384 // high-density lipoprotein particle clearance // inferred from electronic annotation /// 0034384 // high-density lipoprotein particle clearance // not recorded /// 0034447 // very-low-density lipoprotein particle clearance // inferred from electronic annotation /// 0034447 // very-low-density lipoprotein particle clearance // not recorded /// 0042157 // lipoprotein metabolic process // inferred from direct assay /// 0042157 // lipoprotein metabolic process // not recorded /// 0042157 // lipoprotein metabolic process // inferred from electronic annotation /// 0042158 // lipoprotein biosynthetic process // inferred from electronic annotation /// 0042158 // lipoprotein biosynthetic process // not recorded /// 0042159 // lipoprotein catabolic process // inferred from electronic annotation /// 0042159 // lipoprotein catabolic process // not recorded /// 0042311 // vasodilation // inferred from electronic annotation /// 0042311 // vasodilation // not recorded /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0043407 // negative regulation of MAP kinase activity // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // not recorded /// 0043537 // negative regulation of blood vessel endothelial cell migration // inferred from electronic annotation /// 0043537 // negative regulation of blood vessel endothelial cell migration // not recorded /// 0043691 // reverse cholesterol transport // inferred from electronic annotation /// 0043691 // reverse cholesterol transport // not recorded /// 0045471 // response to ethanol // inferred from direct assay /// 0045541 // negative regulation of cholesterol biosynthetic process // inferred from electronic annotation /// 0045541 // negative regulation of cholesterol biosynthetic process // not recorded /// 0048844 // artery morphogenesis // inferred from electronic annotation /// 0048844 // artery morphogenesis // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0051000 // positive regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051000 // positive regulation of nitric-oxide synthase activity // not recorded /// 0051044 // positive regulation of membrane protein ectodomain proteolysis // inferred from electronic annotation /// 0051044 // positive regulation of membrane protein ectodomain proteolysis // not recorded /// 0051651 // maintenance of location in cell // inferred from electronic annotation /// 0051651 // maintenance of location in cell // not recorded /// 0055088 // lipid homeostasis // inferred from electronic annotation /// 0055088 // lipid homeostasis // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0030425 // dendrite // inferred from direct assay /// 0031232 // extrinsic to external side of plasma membrane // inferred from direct assay /// 0034361 // very-low-density lipoprotein particle // inferred from electronic annotation /// 0034361 // very-low-density lipoprotein particle // not recorded /// 0034362 // low-density lipoprotein particle // inferred from electronic annotation /// 0034362 // low-density lipoprotein particle // not recorded /// 0034363 // intermediate-density lipoprotein particle // inferred from electronic annotation /// 0034363 // intermediate-density lipoprotein particle // not recorded /// 0034364 // high-density lipoprotein particle // inferred from electronic annotation /// 0034364 // high-density lipoprotein particle // not recorded /// 0042627 // chylomicron // inferred from electronic annotation /// 0042627 // chylomicron // not recorded /// 0043025 // neuronal cell body // inferred from direct assay 0001540 // beta-amyloid binding // inferred from electronic annotation /// 0001540 // beta-amyloid binding // not recorded /// 0001540 // beta-amyloid binding // inferred from sequence or structural similarity /// 0005319 // lipid transporter activity // inferred from direct assay /// 0005319 // lipid transporter activity // not recorded /// 0005319 // lipid transporter activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from direct assay /// 0005543 // phospholipid binding // not recorded /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded /// 0008289 // lipid binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0016209 // antioxidant activity // inferred from electronic annotation /// 0016209 // antioxidant activity // not recorded /// 0017127 // cholesterol transporter activity // inferred from electronic annotation /// 0017127 // cholesterol transporter activity // not recorded /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046911 // metal chelating activity // inferred from electronic annotation /// 0046911 // metal chelating activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0048156 // tau protein binding // inferred from electronic annotation /// 0048156 // tau protein binding // not recorded /// 0050750 // low-density lipoprotein receptor binding // inferred from electronic annotation /// 0050750 // low-density lipoprotein receptor binding // not recorded /// 0060228 // phosphatidylcholine-sterol O-acyltransferase activator activity // inferred from electronic annotation /// 0060228 // phosphatidylcholine-sterol O-acyltransferase activator activity // not recorded /// 0070326 // very-low-density lipoprotein receptor binding // inferred from electronic annotation /// 0070326 // very-low-density lipoprotein receptor binding // not recorded 1370863_at BF283692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283692 /DB_XREF=gi:11214762 /DB_XREF=EST448283 /CLONE=RGIEF54 /FEA=mRNA /CNT=37 /TID=Rn.6681.1 /TIER=Stack /STK=33 /UG=Rn.6681 /UG_TITLE=Rat keratin (K5) mRNA, 3 end BF283692 keratin 5 Krt5 369017 NM_183333 0031581 // hemidesmosome assembly // not recorded 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded /// 0005882 // intermediate filament // inferred from electronic annotation /// 0045095 // keratin filament // inferred from direct assay /// 0045095 // keratin filament // not recorded /// 0045095 // keratin filament // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370864_at Z78279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Z78279.1 /DB_XREF=gi:2894105 /FEA=mRNA /CNT=159 /TID=Rn.2953.1 /TIER=Stack /STK=32 /UG=Rn.2953 /LL=29393 /UG_GENE=Col1a1 /DEF=R.norvegicus mRNA for collagen alpha1 type I. /PROD=Collagen alpha1 Z78279 collagen, type I, alpha 1 Col1a1 29393 NM_053304 0001501 // skeletal system development // not recorded /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001503 // ossification // inferred from expression pattern /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0001957 // intramembranous ossification // inferred from electronic annotation /// 0001957 // intramembranous ossification // not recorded /// 0001958 // endochondral ossification // inferred from electronic annotation /// 0001958 // endochondral ossification // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0007601 // visual perception // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010812 // negative regulation of cell-substrate adhesion // inferred from electronic annotation /// 0010812 // negative regulation of cell-substrate adhesion // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0015031 // protein transport // not recorded /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0030199 // collagen fibril organization // not recorded /// 0031960 // response to corticosteroid stimulus // inferred from expression pattern /// 0032964 // collagen biosynthetic process // inferred from electronic annotation /// 0032964 // collagen biosynthetic process // not recorded /// 0034505 // tooth mineralization // inferred from electronic annotation /// 0034505 // tooth mineralization // not recorded /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0043588 // skin development // not recorded /// 0043588 // skin development // inferred from electronic annotation /// 0043589 // skin morphogenesis // inferred from electronic annotation /// 0043589 // skin morphogenesis // not recorded /// 0048705 // skeletal system morphogenesis // not recorded /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // not recorded /// 0051591 // response to cAMP // inferred from expression pattern /// 0060325 // face morphogenesis // inferred from electronic annotation /// 0060325 // face morphogenesis // not recorded /// 0060346 // bone trabecula formation // inferred from electronic annotation /// 0060346 // bone trabecula formation // not recorded /// 0060351 // cartilage development involved in endochondral bone morphogenesis // inferred from electronic annotation /// 0060351 // cartilage development involved in endochondral bone morphogenesis // not recorded /// 0070208 // protein heterotrimerization // inferred from electronic annotation /// 0070208 // protein heterotrimerization // not recorded /// 0071300 // cellular response to retinoic acid // inferred from expression pattern /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen // inferred from electronic annotation /// 0005581 // collagen // not recorded /// 0005584 // collagen type I // inferred from electronic annotation /// 0005584 // collagen type I // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0048407 // platelet-derived growth factor binding // inferred from electronic annotation /// 0048407 // platelet-derived growth factor binding // not recorded 1370865_at BI277627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277627 /DB_XREF=gi:14923683 /DB_XREF=UI-R-CY0-bxt-e-04-0-UI.s1 /CLONE=UI-R-CY0-bxt-e-04-0-UI /FEA=mRNA /CNT=46 /TID=Rn.2837.1 /TIER=Stack /STK=32 /UG=Rn.2837 /LL=25179 /UG_GENE=Idh3g /UG_TITLE=NAD (H)-specific isocitrate dehydrogenase gamma subunit BI277627 isocitrate dehydrogenase 3 (NAD), gamma Idh3g 25179 NM_031551 0006099 // tricarboxylic acid cycle // inferred from direct assay /// 0006099 // tricarboxylic acid cycle // traceable author statement /// 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006102 // isocitrate metabolic process // inferred from direct assay /// 0006102 // isocitrate metabolic process // inferred from sequence or structural similarity /// 0006103 // 2-oxoglutarate metabolic process // inferred from direct assay /// 0006734 // NADH metabolic process // inferred from direct assay /// 0045926 // negative regulation of growth // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005962 // mitochondrial isocitrate dehydrogenase complex (NAD+) // inferred by curator 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004449 // isocitrate dehydrogenase (NAD+) activity // inferred from direct assay /// 0004449 // isocitrate dehydrogenase (NAD+) activity // inferred from sequence or structural similarity /// 0004449 // isocitrate dehydrogenase (NAD+) activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation 1370866_at AA944073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944073 /DB_XREF=gi:4132391 /DB_XREF=EST199572 /CLONE=REMAA79 /FEA=mRNA /CNT=51 /TID=Rn.2833.1 /TIER=Stack /STK=31 /UG=Rn.2833 /UG_TITLE=R.norvegicus mRNA for ribosomal protein L41 AA944073 ribosomal protein L41 Rpl41 124440 NM_139083 0006412 // translation // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370867_at BM384381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384381 /DB_XREF=gi:18184434 /DB_XREF=UI-R-CN1-cjn-a-18-0-UI.s1 /CLONE=UI-R-CN1-cjn-a-18-0-UI /FEA=mRNA /CNT=36 /TID=Rn.1155.1 /TIER=Stack /STK=30 /UG=Rn.1155 /LL=81667 /UG_GENE=Gnb2 /UG_TITLE=guanine nucleotide binding protein beta 2 subunit BM384381 guanine nucleotide binding protein (G protein), beta polypeptide 2 Gnb2 81667 NM_031037 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // traceable author statement /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0008283 // cell proliferation // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0050909 // sensory perception of taste // inferred from electronic annotation 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0005834 // heterotrimeric G-protein complex // inferred from mutant phenotype /// 0005834 // heterotrimeric G-protein complex // traceable author statement /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0001664 // G-protein-coupled receptor binding // inferred from mutant phenotype /// 0003924 // GTPase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005246 // calcium channel regulator activity // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0031702 // type 1 angiotensin receptor binding // inferred from mutant phenotype 1370868_at X54806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X54806.1 /DB_XREF=gi:55955 /FEA=mRNA /CNT=29 /TID=Rn.31789.1 /TIER=Stack /STK=25 /UG=Rn.31789 /DEF=R.norvegicus mRNA for cytokeratin type I (3 end). /PROD=cytokeratin type I X54806 keratin 1 Krt1 300250 NM_001008802 0001867 // complement activation, lectin pathway // inferred from electronic annotation /// 0001867 // complement activation, lectin pathway // not recorded 0005882 // intermediate filament // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0045095 // keratin filament // inferred from electronic annotation /// 0045095 // keratin filament // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from electronic annotation /// 0005529 // sugar binding // not recorded 1370869_at AI102790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102790 /DB_XREF=gi:3707474 /DB_XREF=EST212079 /CLONE=REMBS66 /FEA=mRNA /CNT=33 /TID=Rn.8273.2 /TIER=Stack /STK=24 /UG=Rn.8273 /LL=29592 /UG_GENE=Bcat1 /UG_TITLE=branched chain aminotransferase 1, cytosolic AI102790 branched chain aminotransferase 1, cytosolic Bcat1 29592 NM_017253 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009081 // branched chain family amino acid metabolic process // inferred from electronic annotation /// 0009082 // branched chain family amino acid biosynthetic process // inferred from electronic annotation /// 0009083 // branched chain family amino acid catabolic process // inferred from electronic annotation /// 0009083 // branched chain family amino acid catabolic process // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004084 // branched-chain-amino-acid transaminase activity // inferred from direct assay /// 0004084 // branched-chain-amino-acid transaminase activity // not recorded /// 0004084 // branched-chain-amino-acid transaminase activity // traceable author statement /// 0004084 // branched-chain-amino-acid transaminase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay 1370870_at M30596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M30596.1 /DB_XREF=gi:205295 /FEA=mRNA /CNT=30 /TID=Rn.3519.1 /TIER=Stack /STK=24 /UG=Rn.3519 /UG_TITLE=Rat cytosolic malic enzyme mRNA, 3 flank /DEF=Rat cytosolic malic enzyme mRNA, 3 flank. M30596 malic enzyme 1, NADP(+)-dependent, cytosolic Me1 24552 NM_012600 0006108 // malate metabolic process // not recorded /// 0006108 // malate metabolic process // inferred from sequence or structural similarity /// 0006108 // malate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from direct assay /// 0051262 // protein tetramerization // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004470 // malic enzyme activity // inferred from direct assay /// 0004470 // malic enzyme activity // not recorded /// 0004470 // malic enzyme activity // inferred from sequence or structural similarity /// 0004470 // malic enzyme activity // inferred from electronic annotation /// 0004473 // malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity // inferred from direct assay /// 0004473 // malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity // not recorded /// 0004473 // malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity // inferred from sequence or structural similarity /// 0004473 // malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0030145 // manganese ion binding // not recorded /// 0030145 // manganese ion binding // inferred from sequence or structural similarity /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from direct assay /// 0051287 // NAD or NADH binding // inferred from electronic annotation 1370871_at BM384165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384165 /DB_XREF=gi:18184218 /DB_XREF=UI-R-DZ0-cks-d-18-0-UI.s1 /CLONE=UI-R-DZ0-cks-d-18-0-UI /FEA=mRNA /CNT=88 /TID=Rn.54869.1 /TIER=Stack /STK=23 /UG=Rn.54869 /UG_TITLE=Rattus norvegicus mRNA for hnRNP protein, partial BM384165 heterogeneous nuclear ribonucleoprotein A3 Hnrnpa3 362152 NM_001111294 /// NM_001111295 /// NM_198132 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0051028 // mRNA transport // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from mutant phenotype /// 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030530 // heterogeneous nuclear ribonucleoprotein complex // inferred from mutant phenotype 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0051033 // RNA transmembrane transporter activity // inferred from mutant phenotype 1370872_at BF288095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288095 /DB_XREF=gi:11219165 /DB_XREF=EST452686 /CLONE=RGIGP46 /FEA=mRNA /CNT=88 /TID=Rn.54869.1 /TIER=Stack /STK=7 /UG=Rn.54869 /UG_TITLE=Rattus norvegicus mRNA for hnRNP protein, partial BF288095 heterogeneous nuclear ribonucleoprotein A3 Hnrnpa3 362152 NM_001111294 /// NM_001111295 /// NM_198132 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0051028 // mRNA transport // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from mutant phenotype /// 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030530 // heterogeneous nuclear ribonucleoprotein complex // inferred from mutant phenotype 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0051033 // RNA transmembrane transporter activity // inferred from mutant phenotype 1370873_at AI411316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411316 /DB_XREF=gi:4254820 /DB_XREF=EST239610 /CLONE=RKIEU27 /FEA=mRNA /CNT=30 /TID=Rn.2892.1 /TIER=Stack /STK=23 /UG=Rn.2892 /UG_TITLE=Rattus norvegicus calmodulin III (Calm3) mRNA, 3 untranslated region AI411316 calmodulin 3 Calm3 24244 NM_012518 0006936 // muscle contraction // not recorded /// 0007049 // cell cycle // not recorded /// 0032465 // regulation of cytokinesis // inferred from electronic annotation /// 0032465 // regulation of cytokinesis // not recorded /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded 0000922 // spindle pole // inferred from electronic annotation /// 0000922 // spindle pole // not recorded /// 0005576 // extracellular region // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded 0005246 // calcium channel regulator activity // non-traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0031432 // titin binding // inferred from electronic annotation /// 0031432 // titin binding // not recorded /// 0031996 // thioesterase binding // not recorded /// 0031997 // N-terminal myristoylation domain binding // inferred from electronic annotation /// 0031997 // N-terminal myristoylation domain binding // not recorded /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction /// 0048306 // calcium-dependent protein binding // inferred from physical interaction 1370874_at BI283832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283832 /DB_XREF=gi:14935963 /DB_XREF=UI-R-CX0s-ccx-c-02-0-UI.s1 /CLONE=UI-R-CX0s-ccx-c-02-0-UI /FEA=mRNA /CNT=24 /TID=Rn.9749.1 /TIER=Stack /STK=21 /UG=Rn.9749 /LL=24283 /UG_GENE=Csh2 /UG_TITLE=Chorionic somatomammotropin hormone 2; Placental lactogen-2 BI283832 Prolactin family 3, subfamily b, member 1 Prl3b1 24283 NM_012535 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation 1370875_at AA851304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851304 /DB_XREF=gi:4131924 /DB_XREF=EST194072 /CLONE=RPLAF03 /FEA=mRNA /CNT=34 /TID=Rn.773.1 /TIER=Stack /STK=20 /UG=Rn.773 /LL=54319 /UG_GENE=Vil2 /UG_TITLE=villin 2 AA851304 ezrin Ezr 54319 NM_019357 0007159 // leukocyte cell-cell adhesion // inferred from electronic annotation /// 0007159 // leukocyte cell-cell adhesion // not recorded /// 0008104 // protein localization // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0022614 // membrane to membrane docking // inferred from electronic annotation /// 0022614 // membrane to membrane docking // not recorded /// 0030855 // epithelial cell differentiation // inferred from expression pattern /// 0035088 // establishment or maintenance of apical/basal cell polarity // inferred from electronic annotation /// 0035088 // establishment or maintenance of apical/basal cell polarity // not recorded /// 0051017 // actin filament bundle assembly // not recorded /// 0051017 // actin filament bundle assembly // inferred from sequence or structural similarity /// 0051017 // actin filament bundle assembly // inferred from electronic annotation 0001726 // ruffle // not recorded /// 0001726 // ruffle // inferred from electronic annotation /// 0001931 // uropod // inferred from electronic annotation /// 0001931 // uropod // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // not recorded /// 0005884 // actin filament // inferred from sequence or structural similarity /// 0005884 // actin filament // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005902 // microvillus // not recorded /// 0005902 // microvillus // inferred from electronic annotation /// 0005932 // microtubule basal body // inferred from electronic annotation /// 0005932 // microtubule basal body // not recorded /// 0005938 // cell cortex // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0015629 // actin cytoskeleton // inferred from sequence or structural similarity /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0019898 // extrinsic to membrane // inferred from electronic annotation /// 0019898 // extrinsic to membrane // not recorded /// 0019898 // extrinsic to membrane // inferred from sequence or structural similarity /// 0030175 // filopodium // inferred from electronic annotation /// 0030175 // filopodium // not recorded /// 0031528 // microvillus membrane // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0005198 // structural molecule activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0050839 // cell adhesion molecule binding // not recorded /// 0050839 // cell adhesion molecule binding // inferred from sequence or structural similarity /// 0050839 // cell adhesion molecule binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded /// 0051015 // actin filament binding // inferred from sequence or structural similarity /// 0051015 // actin filament binding // inferred from electronic annotation 1370876_at BI285436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285436 /DB_XREF=gi:14939072 /DB_XREF=UI-R-DD0-caa-b-01-0-UI.s1 /CLONE=UI-R-DD0-caa-b-01-0-UI /FEA=mRNA /CNT=24 /TID=Rn.3048.1 /TIER=Stack /STK=20 /UG=Rn.3048 /LL=116690 /UG_GENE=Nfasc /UG_TITLE=neurofascin BI285436 MAP7 domain containing 1 Map7d1 681287 NM_001109438 1370877_at L11002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L11002.1 /DB_XREF=gi:202922 /FEA=mRNA /CNT=24 /TID=Rn.3048.1 /TIER=ConsEnd /STK=0 /UG=Rn.3048 /LL=116690 /UG_GENE=Nfasc /UG_TITLE=neurofascin /DEF=Rat ankyrin binding glycoprotein-1 related mRNA sequence. L11002 neurofascin Nfasc 116690 NM_001160313 /// NM_001160314 /// NM_001160315 /// NM_053909 0007155 // cell adhesion // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007422 // peripheral nervous system development // inferred from expression pattern /// 0042552 // myelination // inferred from expression pattern /// 0050808 // synapse organization // inferred from electronic annotation /// 0050808 // synapse organization // not recorded 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0033268 // node of Ranvier // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370878_at Y00350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y00350.1 /DB_XREF=gi:57464 /FEA=mRNA /CNT=29 /TID=Rn.4214.1 /TIER=Stack /STK=19 /UG=Rn.4214 /LL=29421 /UG_GENE=Urod /DEF=Rat mRNA for uroporphyrinogen decarboxylase (URO-D; EC 4.1.1.31). /PROD=uroporphyrinogen decarboxylase Y00350 uroporphyrinogen decarboxylase Urod 29421 NM_019209 0001889 // liver development // inferred from expression pattern /// 0006779 // porphyrin biosynthetic process // inferred from direct assay /// 0006779 // porphyrin biosynthetic process // inferred from electronic annotation /// 0006783 // heme biosynthetic process // inferred by curator /// 0006783 // heme biosynthetic process // not recorded /// 0006783 // heme biosynthetic process // non-traceable author statement /// 0006783 // heme biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0010039 // response to iron ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014075 // response to amine stimulus // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0042168 // heme metabolic process // not recorded /// 0042168 // heme metabolic process // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from expression pattern /// 0046502 // uroporphyrinogen III metabolic process // inferred from direct assay /// 0046689 // response to mercury ion // inferred from expression pattern /// 0051597 // response to methylmercury // inferred from expression pattern /// 0060992 // response to fungicide // inferred from expression pattern /// 0071243 // cellular response to arsenic // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0004853 // uroporphyrinogen decarboxylase activity // inferred from direct assay /// 0004853 // uroporphyrinogen decarboxylase activity // not recorded /// 0004853 // uroporphyrinogen decarboxylase activity // non-traceable author statement /// 0004853 // uroporphyrinogen decarboxylase activity // inferred from electronic annotation /// 0008198 // ferrous iron binding // inferred from direct assay /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation 1370879_at D90401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D90401.1 /DB_XREF=gi:220658 /FEA=mRNA /CNT=33 /TID=Rn.58.3 /TIER=Stack /STK=19 /UG=Rn.58 /LL=26955 /UG_GENE=AF-6 /UG_TITLE=afadin /DEF=Rattus norvegicus mRNA for dihydrolipoamide succinyltransferase. D90401 dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) Dlst 299201 NM_001006981 0006099 // tricarboxylic acid cycle // inferred by curator /// 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006103 // 2-oxoglutarate metabolic process // inferred from direct assay /// 0006734 // NADH metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0045252 // oxoglutarate dehydrogenase complex // inferred from direct assay /// 0045252 // oxoglutarate dehydrogenase complex // inferred from electronic annotation 0004149 // dihydrolipoyllysine-residue succinyltransferase activity // inferred from direct assay /// 0004149 // dihydrolipoyllysine-residue succinyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from physical interaction /// 0051087 // chaperone binding // inferred from physical interaction 1370880_at X62528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X62528.1 /DB_XREF=gi:57670 /FEA=mRNA /CNT=30 /TID=Rn.3756.1 /TIER=Stack /STK=19 /UG=Rn.3756 /DEF=R.rattus mRNA for ribonuclease inhibitor. /PROD=ribonuclease inhibitor X62528 ribonuclease inhibitor-like /// ribonuclease/angiogenin inhibitor 1 LOC100360501 /// Rnh1 100360501 /// 245964 NM_139105 /// XM_002728839 /// XM_002728840 /// XM_002728841 0045765 // regulation of angiogenesis // inferred from electronic annotation /// 0045765 // regulation of angiogenesis // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0032311 // angiogenin-PRI complex // inferred from electronic annotation /// 0032311 // angiogenin-PRI complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008428 // ribonuclease inhibitor activity // inferred from electronic annotation /// 0008428 // ribonuclease inhibitor activity // not recorded 1370881_at AI411117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411117 /DB_XREF=gi:4254621 /DB_XREF=EST239411 /CLONE=RKIET47 /FEA=mRNA /CNT=21 /TID=Rn.6360.1 /TIER=Stack /STK=18 /UG=Rn.6360 /LL=25274 /UG_GENE=Tst /UG_TITLE=Thiosulfate sulphurtransferase (rhodanese) AI411117 thiosulfate sulfurtransferase Tst 25274 NM_012808 0008272 // sulfate transport // inferred from electronic annotation /// 0016226 // iron-sulfur cluster assembly // non-traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0004792 // thiosulfate sulfurtransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1370882_at AI171966 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171966 /DB_XREF=gi:3712006 /DB_XREF=EST217960 /CLONE=RMUBT25 /FEA=mRNA /CNT=20 /TID=Rn.5892.1 /TIER=Stack /STK=16 /UG=Rn.5892 /UG_TITLE=R.norvegicus mRNA for RT1.Mb AI171966 RT1 class II, locus DMb RT1-DMb 294273 NM_198740 0002504 // antigen processing and presentation of peptide or polysaccharide antigen via MHC class II // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // not recorded /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // not recorded /// 0051085 // chaperone mediated protein folding requiring cofactor // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042613 // MHC class II protein complex // inferred from electronic annotation 1370883_at Y00480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y00480.1 /DB_XREF=gi:57163 /FEA=mRNA /CNT=30 /TID=Rn.4200.1 /TIER=Stack /STK=15 /UG=Rn.4200 /UG_TITLE=Rat (diabetic BB) MHC class II alpha chain RT1.D alpha (u) /DEF=Rat (diabetic BB) MHC class II alpha chain RT1.D alpha (u). Y00480 RT1 class II, locus Da RT1-Da 294269 NM_001008847 0002504 // antigen processing and presentation of peptide or polysaccharide antigen via MHC class II // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0005764 // lysosome // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042613 // MHC class II protein complex // inferred from electronic annotation 1370884_at M36410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M36410.1 /DB_XREF=gi:206895 /FEA=mRNA /CNT=22 /TID=Rn.6658.1 /TIER=Stack /STK=15 /UG=Rn.6658 /LL=29270 /UG_GENE=Spr /UG_TITLE=sepiapterin reductase /DEF=Rat sepiapterin reductase mRNA, partial cds. M36410 sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) Spr 29270 NM_019181 0006558 // L-phenylalanine metabolic process // not recorded /// 0006729 // tetrahydrobiopterin biosynthetic process // inferred from mutant phenotype /// 0006729 // tetrahydrobiopterin biosynthetic process // traceable author statement /// 0006729 // tetrahydrobiopterin biosynthetic process // inferred from electronic annotation /// 0006809 // nitric oxide biosynthetic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from mutant phenotype /// 0016265 // death // not recorded /// 0019889 // pteridine metabolic process // not recorded /// 0040014 // regulation of multicellular organism growth // not recorded /// 0042415 // norepinephrine metabolic process // not recorded /// 0042417 // dopamine metabolic process // not recorded /// 0042428 // serotonin metabolic process // not recorded /// 0046146 // tetrahydrobiopterin metabolic process // not recorded /// 0048667 // cell morphogenesis involved in neuron differentiation // not recorded /// 0050882 // voluntary musculoskeletal movement // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004757 // sepiapterin reductase activity // inferred from direct assay /// 0004757 // sepiapterin reductase activity // inferred from mutant phenotype /// 0004757 // sepiapterin reductase activity // traceable author statement /// 0004757 // sepiapterin reductase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1370885_at AA849399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849399 /DB_XREF=gi:2936939 /DB_XREF=EST192166 /CLONE=RMUAE33 /FEA=mRNA /CNT=20 /TID=Rn.1475.1 /TIER=Stack /STK=15 /UG=Rn.1475 /UG_TITLE=Rattus norvegicus mRNA for cathepsin Y, partial cds AA849399 cathepsin Z Ctsz 252929 NM_183330 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // traceable author statement /// 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1370886_a_at AA944723 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944723 /DB_XREF=gi:3104639 /DB_XREF=EST200222 /CLONE=REMAO36 /FEA=mRNA /CNT=42 /TID=Rn.6013.1 /TIER=Stack /STK=14 /UG=Rn.6013 /LL=171041 /UG_GENE=Klc1 /UG_TITLE=kinesin light chain 1 AA944723 kinesin light chain 1 Klc1 171041 NM_001081972 /// NM_001081973 /// NM_001081974 0008088 // axon cargo transport // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005871 // kinesin complex // inferred from direct assay /// 0005871 // kinesin complex // inferred from electronic annotation /// 0005871 // kinesin complex // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0031410 // cytoplasmic vesicle // not recorded /// 0035253 // ciliary rootlet // not recorded /// 0043005 // neuron projection // not recorded /// 0043227 // membrane-bounded organelle // not recorded 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1370887_at BI279862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279862 /DB_XREF=gi:14928084 /DB_XREF=UI-R-CU0s-cbr-g-10-0-UI.s1 /CLONE=UI-R-CU0s-cbr-g-10-0-UI /FEA=mRNA /CNT=20 /TID=Rn.23203.1 /TIER=Stack /STK=14 /UG=Rn.23203 /LL=84574 /UG_GENE=Tgfb1i1 /UG_TITLE=transforming growth factor beta 1 induced transcript 1 BI279862 transforming growth factor beta 1 induced transcript 1 Tgfb1i1 84574 NM_001191840 /// XM_001079262 /// XM_341934 0009408 // response to heat // inferred from direct assay /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0030579 // ubiquitin-dependent SMAD protein catabolic process // not recorded /// 0030855 // epithelial cell differentiation // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045599 // negative regulation of fat cell differentiation // not recorded /// 0045941 // positive regulation of transcription // not recorded 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // traceable author statement /// 0005925 // focal adhesion // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0003713 // transcription coactivator activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048495 // Roundabout binding // not recorded /// 0050681 // androgen receptor binding // not recorded /// 0070411 // I-SMAD binding // inferred from physical interaction /// 0070411 // I-SMAD binding // not recorded 1370888_at X15030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X15030.1 /DB_XREF=gi:55970 /FEA=mRNA /CNT=18 /TID=Rn.11077.1 /TIER=Stack /STK=14 /UG=Rn.11077 /DEF=Rat CoxVa mRNA for mitochondrial cytochrome c oxidase subunit Va. /PROD=cytochrome c oxidase subunit Va preprotein X15030 cytochrome c oxidase, subunit Va Cox5a 252934 NM_145783 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from direct assay /// 0004129 // cytochrome-c oxidase activity // traceable author statement /// 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370889_at AF311886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF311886.1 /DB_XREF=gi:11345408 /FEA=mRNA /CNT=17 /TID=Rn.8023.1 /TIER=ConsEnd /STK=0 /UG=Rn.8023 /DEF=Rattus norvegicus cytochrome P450-like protein mRNA, partial cds. /PROD=cytochrome P450-like protein AF311886 cytochrome P450, family 4, subfamily v, polypeptide 3 Cyp4v3 266761 NM_001135600 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370890_at AI012420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012420 /DB_XREF=gi:3226252 /DB_XREF=EST206871 /CLONE=RPLAX04 /FEA=mRNA /CNT=46 /TID=Rn.8252.1 /TIER=Stack /STK=13 /UG=Rn.8252 /LL=81732 /UG_GENE=Actr3 /UG_TITLE=actin-related protein 3 AI012420 ARP3 actin-related protein 3 homolog (yeast) Actr3 81732 NM_031068 0009743 // response to carbohydrate stimulus // inferred from expression pattern /// 0010592 // positive regulation of lamellipodium assembly // inferred from mutant phenotype /// 0030833 // regulation of actin filament polymerization // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // inferred from mutant phenotype /// 0043519 // regulation of myosin II filament assembly or disassembly // inferred from mutant phenotype /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0046677 // response to antibiotic // inferred from expression pattern /// 0050775 // positive regulation of dendrite morphogenesis // inferred from mutant phenotype /// 0051491 // positive regulation of filopodium assembly // inferred from mutant phenotype /// 0051789 // response to protein stimulus // inferred from expression pattern 0000139 // Golgi membrane // inferred from direct assay /// 0002102 // podosome // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // inferred from direct assay /// 0030027 // lamellipodium // inferred from direct assay /// 0030027 // lamellipodium // not recorded /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030056 // hemidesmosome // inferred from direct assay /// 0031252 // cell leading edge // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0060076 // excitatory synapse // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1370891_at X13016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X13016.1 /DB_XREF=gi:56804 /FEA=mRNA /CNT=24 /TID=Rn.3705.1 /TIER=Stack /STK=13 /UG=Rn.3705 /DEF=Rat mRNA for MRC OX-45 surface antigen. /PROD=OX-45 antigen preprotein (AA -22 to 218) X13016 Cd48 molecule Cd48 245962 NM_139103 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0042110 // T cell activation // inferred from electronic annotation /// 0042110 // T cell activation // not recorded /// 0045576 // mast cell activation // inferred from mutant phenotype /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded /// 0046658 // anchored to plasma membrane // inferred from direct assay 0003823 // antigen binding // inferred from mutant phenotype /// 0003823 // antigen binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043499 // eukaryotic cell surface binding // inferred from electronic annotation /// 0043499 // eukaryotic cell surface binding // not recorded 1370892_at BI285347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285347 /DB_XREF=gi:14938889 /DB_XREF=UI-R-DB0-byz-a-05-0-UI.s1 /CLONE=UI-R-DB0-byz-a-05-0-UI /FEA=mRNA /CNT=16 /TID=Rn.30176.1 /TIER=Stack /STK=13 /UG=Rn.30176 /LL=24233 /UG_GENE=C4a /UG_TITLE=Complement component 4 BI285347 complement component 4, gene 2 /// complement component 4B (Chido blood group) C4-2 /// C4b 24233 /// 406161 NM_001002805 /// NM_031504 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // non-traceable author statement /// 0006956 // complement activation // not recorded /// 0006956 // complement activation // traceable author statement /// 0006956 // complement activation // inferred from electronic annotation /// 0006958 // complement activation, classical pathway // non-traceable author statement /// 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0016064 // immunoglobulin mediated immune response // not recorded /// 0045087 // innate immune response // inferred from electronic annotation /// 0045987 // positive regulation of smooth muscle contraction // non-traceable author statement 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay 0004866 // endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1370893_at BI296153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296153 /DB_XREF=gi:14960308 /DB_XREF=UI-R-DK0-cew-h-12-0-UI.s1 /CLONE=UI-R-DK0-cew-h-12-0-UI /FEA=mRNA /CNT=16 /TID=Rn.15516.1 /TIER=Stack /STK=13 /UG=Rn.15516 /UG_TITLE=Rat mRNA for acetyl-coenzyme A carboxylase (EC 6.4.1.2.) 3 untranslated region BI296153 acetyl-coenzyme A carboxylase alpha Acaca 60581 NM_022193 0001894 // tissue homeostasis // inferred from electronic annotation /// 0001894 // tissue homeostasis // not recorded /// 0006084 // acetyl-CoA metabolic process // inferred from direct assay /// 0006629 // lipid metabolic process // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from direct assay /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0044268 // multicellular organismal protein metabolic process // inferred from electronic annotation /// 0044268 // multicellular organismal protein metabolic process // not recorded /// 0055088 // lipid homeostasis // inferred from electronic annotation /// 0055088 // lipid homeostasis // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003989 // acetyl-CoA carboxylase activity // inferred from direct assay /// 0003989 // acetyl-CoA carboxylase activity // inferred from electronic annotation /// 0003989 // acetyl-CoA carboxylase activity // inferred from mutant phenotype /// 0003989 // acetyl-CoA carboxylase activity // not recorded /// 0004075 // biotin carboxylase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0009374 // biotin binding // inferred from electronic annotation /// 0009374 // biotin binding // inferred from mutant phenotype /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370894_at AJ011811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ011811.1 /DB_XREF=gi:4138434 /GEN=CLDN7 /FEA=mRNA /CNT=15 /TID=Rn.32259.1 /TIER=Stack /STK=13 /UG=Rn.32259 /LL=65132 /DEF=Rattus norvegicus mRNA for claudin-7, clone RPCCB40, partial. /PROD=claudin-7 AJ011811 claudin 7 Cldn7 65132 NM_031702 0016338 // calcium-independent cell-cell adhesion // inferred from sequence or structural similarity 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // not recorded /// 0005923 // tight junction // inferred from sequence or structural similarity /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from sequence or structural similarity 1370895_at AI179399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179399 /DB_XREF=gi:3730037 /DB_XREF=EST223101 /CLONE=RSPCG71 /FEA=mRNA /CNT=19 /TID=Rn.2875.1 /TIER=Stack /STK=12 /UG=Rn.2875 /LL=85250 /UG_GENE=Col5a2 /UG_TITLE=collagen type V, alpha 2 AI179399 collagen, type V, alpha 2 Col5a2 85250 NM_053488 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001503 // ossification // inferred from expression pattern /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0030199 // collagen fibril organization // not recorded /// 0043588 // skin development // inferred from electronic annotation /// 0043588 // skin development // not recorded /// 0048592 // eye morphogenesis // inferred from electronic annotation /// 0048592 // eye morphogenesis // not recorded 0005581 // collagen // inferred from electronic annotation /// 0005581 // collagen // not recorded /// 0005588 // collagen type V // not recorded /// 0005588 // collagen type V // traceable author statement /// 0005588 // collagen type V // inferred from electronic annotation 0005201 // extracellular matrix structural constituent // traceable author statement /// 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046332 // SMAD binding // not recorded 1370896_a_at X16262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X16262.1 /DB_XREF=gi:56650 /FEA=mRNA /CNT=15 /TID=Rn.1239.2 /TIER=Stack /STK=12 /UG=Rn.1239 /LL=24582 /UG_GENE=Myh11 /DEF=Rat mRNA for alternatively spliced smooth muscle myosin heavy chain (clone RAMHC21). /PROD=myosin heavy chain 21 (AA 621) X16262 myosin, heavy chain 11, smooth muscle Myh11 24582 NM_001170600 /// XM_001053471 /// XM_573030 0006936 // muscle contraction // not recorded /// 0006939 // smooth muscle contraction // not recorded /// 0006939 // smooth muscle contraction // non-traceable author statement /// 0006939 // smooth muscle contraction // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0048251 // elastic fiber assembly // not recorded /// 0048739 // cardiac muscle fiber development // not recorded 0001725 // stress fiber // not recorded /// 0001725 // stress fiber // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005859 // muscle myosin complex // not recorded /// 0005859 // muscle myosin complex // non-traceable author statement /// 0005859 // muscle myosin complex // inferred from electronic annotation /// 0016459 // myosin complex // inferred from electronic annotation /// 0016459 // myosin complex // not recorded /// 0030016 // myofibril // inferred from electronic annotation /// 0030485 // smooth muscle contractile fiber // not recorded /// 0030485 // smooth muscle contractile fiber // inferred from electronic annotation /// 0032982 // myosin filament // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003774 // motor activity // not recorded /// 0003779 // actin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008307 // structural constituent of muscle // not recorded /// 0008307 // structural constituent of muscle // non-traceable author statement 1370897_at J02827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J02827.1 /DB_XREF=gi:203120 /FEA=mRNA /CNT=13 /TID=Rn.3489.1 /TIER=Stack /STK=12 /UG=Rn.3489 /LL=25244 /UG_GENE=Bckdha /UG_TITLE=Branched chain alpha-ketoacid dehydrogenase subunit E1 alpha /DEF=Rat branched chain alpha-ketoacid dehydrogenase E1-alpha subunit mRNA, 3 end. J02827 branched chain ketoacid dehydrogenase E1, alpha polypeptide Bckdha 25244 NM_012782 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0009083 // branched chain family amino acid catabolic process // not recorded /// 0009083 // branched chain family amino acid catabolic process // traceable author statement /// 0009083 // branched chain family amino acid catabolic process // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005947 // mitochondrial alpha-ketoglutarate dehydrogenase complex // not recorded /// 0005947 // mitochondrial alpha-ketoglutarate dehydrogenase complex // inferred from sequence or structural similarity 0003826 // alpha-ketoacid dehydrogenase activity // not recorded /// 0003826 // alpha-ketoacid dehydrogenase activity // traceable author statement /// 0003826 // alpha-ketoacid dehydrogenase activity // inferred from sequence or structural similarity /// 0003863 // 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016536 // cyclin-dependent protein kinase 5 activator regulator activity // inferred from electronic annotation /// 0016624 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047101 // 2-oxoisovalerate dehydrogenase (acylating) activity // traceable author statement 1370898_at BF288101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288101 /DB_XREF=gi:11219171 /DB_XREF=EST452692 /CLONE=RGIGP54 /FEA=mRNA /CNT=22 /TID=Rn.6147.1 /TIER=Stack /STK=11 /UG=Rn.6147 /LL=29140 /UG_GENE=Snn /UG_TITLE=stannin BF288101 stannin Snn 29140 NM_001034083 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1370899_at AI599699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599699 /DB_XREF=gi:4608747 /DB_XREF=EST251402 /CLONE=REMEG20 /FEA=mRNA /CNT=35 /TID=Rn.54645.1 /TIER=Stack /STK=6 /UG=Rn.54645 /UG_TITLE=Rattus norvegicus NonOp54nrb homolog mRNA, partial cds AI599699 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) Sfpq 252855 NM_001025271 0000380 // alternative nuclear mRNA splicing, via spliceosome // inferred from electronic annotation /// 0000380 // alternative nuclear mRNA splicing, via spliceosome // not recorded 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded /// 0042382 // paraspeckles // inferred from electronic annotation /// 0042382 // paraspeckles // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1370900_at BM391169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391169 /DB_XREF=gi:18191222 /DB_XREF=UI-R-DY0-ckq-e-03-0-UI.s1 /CLONE=UI-R-DY0-ckq-e-03-0-UI /FEA=mRNA /CNT=13 /TID=Rn.1072.1 /TIER=Stack /STK=11 /UG=Rn.1072 /UG_TITLE=Rattus norvegicus myosin heavy chain mRNA, 3 end BM391169 myosin, heavy chain 2, skeletal muscle, adult /// myosin, heavy chain 4, skeletal muscle Myh2 /// Myh4 360543 /// 691644 NM_001135157 /// NM_019325 0001778 // plasma membrane repair // not recorded /// 0006936 // muscle contraction // not recorded /// 0006936 // muscle contraction // inferred from electronic annotation /// 0006936 // muscle contraction // inferred from direct assay /// 0006941 // striated muscle contraction // traceable author statement /// 0014823 // response to activity // not recorded /// 0031034 // myosin filament assembly // traceable author statement 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005826 // actomyosin contractile ring // not recorded /// 0005859 // muscle myosin complex // inferred from direct assay /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0016459 // myosin complex // inferred from electronic annotation /// 0030016 // myofibril // inferred from electronic annotation /// 0030016 // myofibril // not recorded /// 0031672 // A band // not recorded /// 0032982 // myosin filament // inferred from electronic annotation /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from electronic annotation 0000146 // microfilament motor activity // traceable author statement /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // traceable author statement 1370901_at AI407120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407120 /DB_XREF=gi:4250624 /DB_XREF=EST235408 /CLONE=ROVDT67 /FEA=mRNA /CNT=15 /TID=Rn.6477.1 /TIER=Stack /STK=11 /UG=Rn.6477 /UG_TITLE=Rattus norvegicus Tclone4 mRNA AI407120 similar to hypothetical protein MGC36831 RGD1306215 296565 NM_001106556 1370902_at AI233740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233740 /DB_XREF=gi:3817620 /DB_XREF=EST230428 /CLONE=RKIDJ50 /FEA=mRNA /CNT=15 /TID=Rn.23676.1 /TIER=Stack /STK=11 /UG=Rn.23676 /UG_TITLE=Rattus norvegicus mRNA for aldose reductase-like protein AI233740 aldo-keto reductase family 1, member B8 Akr1b8 286921 NM_173136 0055114 // oxidation reduction // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation 1370903_a_at AI146115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146115 /DB_XREF=gi:3667914 /DB_XREF=UI-R-BT0-qh-b-06-0-UI.s1 /CLONE=UI-R-BT0-qh-b-06-0-UI /FEA=mRNA /CNT=14 /TID=Rn.46606.1 /TIER=Stack /STK=11 /UG=Rn.46606 /LL=24338 /UG_GENE=Ephb2 /UG_TITLE=Eph receptor B2 (ELK-related protein tyrosine kinase) AI146115 similar to N-myc downstream regulated gene 3 /// N-myc downstream regulated gene 3 LOC679885 /// Ndrg3 296318 /// 679885 NM_001013923 /// XR_086215 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0021545 // cranial nerve development // inferred from electronic annotation /// 0021631 // optic nerve morphogenesis // inferred from electronic annotation /// 0021952 // central nervous system projection neuron axonogenesis // inferred from electronic annotation /// 0031290 // retinal ganglion cell axon guidance // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from mutant phenotype /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005003 // ephrin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008046 // axon guidance receptor activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1370904_at BI301490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301490 /DB_XREF=gi:14977770 /DB_XREF=UI-R-DN0-cit-m-01-0-UI.s1 /CLONE=UI-R-DN0-cit-m-01-0-UI /FEA=mRNA /CNT=12 /TID=Rn.35809.1 /TIER=Stack /STK=11 /UG=Rn.35809 /UG_TITLE=R.norvegicus mRNA for RT1.Ma BI301490 RT1 class II, locus DMa RT1-DMa 294274 NM_198741 0002504 // antigen processing and presentation of peptide or polysaccharide antigen via MHC class II // inferred from electronic annotation /// 0006461 // protein complex assembly // inferred from electronic annotation /// 0006461 // protein complex assembly // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0015031 // protein transport // not recorded /// 0016064 // immunoglobulin mediated immune response // inferred from electronic annotation /// 0016064 // immunoglobulin mediated immune response // not recorded /// 0019882 // antigen processing and presentation // not recorded /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // not recorded /// 0045059 // positive thymic T cell selection // inferred from electronic annotation /// 0045059 // positive thymic T cell selection // not recorded /// 0045582 // positive regulation of T cell differentiation // inferred from electronic annotation /// 0045582 // positive regulation of T cell differentiation // not recorded /// 0050778 // positive regulation of immune response // inferred from electronic annotation /// 0050778 // positive regulation of immune response // not recorded /// 0051085 // chaperone mediated protein folding requiring cofactor // inferred from electronic annotation /// 0051085 // chaperone mediated protein folding requiring cofactor // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005765 // lysosomal membrane // not recorded /// 0005770 // late endosome // not recorded /// 0005770 // late endosome // inferred from electronic annotation /// 0005771 // multivesicular body // inferred from electronic annotation /// 0005771 // multivesicular body // not recorded /// 0005886 // plasma membrane // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0010008 // endosome membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042613 // MHC class II protein complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370905_at BI291229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291229 /DB_XREF=gi:14950574 /DB_XREF=UI-R-CV2-cgm-g-08-0-UI.s1 /CLONE=UI-R-CV2-cgm-g-08-0-UI /FEA=mRNA /CNT=17 /TID=Rn.10431.1 /TIER=Stack /STK=10 /UG=Rn.10431 /UG_TITLE=R.norvegicus trg mRNA BI291229 dedicator of cytokinesis 9 Dock9 259237 NM_001105759 0050790 // regulation of catalytic activity // not recorded 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0017048 // Rho GTPase binding // not recorded /// 0051020 // GTPase binding // inferred from electronic annotation 1370906_at BM385109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385109 /DB_XREF=gi:18185162 /DB_XREF=UI-R-CN1-cjm-b-16-0-UI.s2 /CLONE=UI-R-CN1-cjm-b-16-0-UI /FEA=mRNA /CNT=13 /TID=Rn.15623.1 /TIER=Stack /STK=10 /UG=Rn.15623 /LL=29711 /UG_GENE=Bckdhb /UG_TITLE=branched chain keto acid dehydrogenase E1, beta polypeptide BM385109 branched chain keto acid dehydrogenase E1, beta polypeptide Bckdhb 29711 NM_019267 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009083 // branched chain family amino acid catabolic process // not recorded /// 0009083 // branched chain family amino acid catabolic process // inferred from electronic annotation /// 0009083 // branched chain family amino acid catabolic process // inferred from sequence or structural similarity /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005947 // mitochondrial alpha-ketoglutarate dehydrogenase complex // not recorded /// 0005947 // mitochondrial alpha-ketoglutarate dehydrogenase complex // inferred from electronic annotation /// 0005947 // mitochondrial alpha-ketoglutarate dehydrogenase complex // inferred from sequence or structural similarity 0003824 // catalytic activity // inferred from electronic annotation /// 0003826 // alpha-ketoacid dehydrogenase activity // not recorded /// 0003826 // alpha-ketoacid dehydrogenase activity // inferred from electronic annotation /// 0003863 // 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1370907_at M83143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M83143.1 /DB_XREF=gi:203146 /FEA=mRNA /CNT=12 /TID=Rn.54567.2 /TIER=Stack /STK=10 /UG=Rn.54567 /DEF=Rat beta-galactoside-alpha 2,6-sialyltransferase mRNA. /PROD=beta-galactoside-alpha 2,6-sialyltransferase M83143 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 St6gal1 25197 NM_001113344 /// NM_147205 0006486 // protein glycosylation // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0003835 // beta-galactoside alpha-2,6-sialyltransferase activity // inferred from electronic annotation /// 0008373 // sialyltransferase activity // inferred from electronic annotation /// 0008373 // sialyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1370908_at AA892297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892297 /DB_XREF=gi:3019176 /DB_XREF=EST196100 /CLONE=RKIAO73 /FEA=mRNA /CNT=18 /TID=Rn.1797.1 /TIER=Stack /STK=9 /UG=Rn.1797 /LL=84577 /UG_GENE=Hdac2 /UG_TITLE=histone deacetylase 2 AA892297 histone deacetylase 2 Hdac2 84577 NM_053447 0006344 // maintenance of chromatin silencing // not recorded /// 0006344 // maintenance of chromatin silencing // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010870 // positive regulation of receptor biosynthetic process // not recorded /// 0010870 // positive regulation of receptor biosynthetic process // inferred from electronic annotation /// 0010977 // negative regulation of neuron projection development // inferred from mutant phenotype /// 0016481 // negative regulation of transcription // inferred from mutant phenotype /// 0016575 // histone deacetylation // not recorded /// 0016575 // histone deacetylation // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0021766 // hippocampus development // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0034605 // cellular response to heat // inferred from expression pattern /// 0042220 // response to cocaine // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0043433 // negative regulation of transcription factor activity // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045786 // negative regulation of cell cycle // not recorded /// 0045862 // positive regulation of proteolysis // not recorded /// 0045862 // positive regulation of proteolysis // inferred from electronic annotation 0000785 // chromatin // inferred from direct assay /// 0000792 // heterochromatin // not recorded /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005657 // replication fork // not recorded /// 0005657 // replication fork // inferred from electronic annotation /// 0016580 // Sin3 complex // not recorded /// 0016580 // Sin3 complex // inferred from electronic annotation /// 0016581 // NuRD complex // not recorded /// 0016581 // NuRD complex // inferred from electronic annotation /// 0035098 // ESC/E(Z) complex // not recorded /// 0035098 // ESC/E(Z) complex // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004407 // histone deacetylase activity // not recorded /// 0004407 // histone deacetylase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // not recorded /// 0016566 // specific transcriptional repressor activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from direct assay /// 0033558 // protein deacetylase activity // not recorded /// 0033558 // protein deacetylase activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1370909_at BI286040 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286040 /DB_XREF=gi:14940293 /DB_XREF=UI-R-CX0s-ccu-g-08-0-UI.s1 /CLONE=UI-R-CX0s-ccu-g-08-0-UI /FEA=mRNA /CNT=16 /TID=Rn.54450.1 /TIER=Stack /STK=9 /UG=Rn.54450 /LL=65274 /UG_GENE=Nup62 /UG_TITLE=nuclear pore glycoprotein 62 BI286040 nucleoporin 62 Nup62 65274 NM_023098 0006810 // transport // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from sequence or structural similarity /// 0007569 // cell aging // not recorded /// 0008219 // cell death // not recorded /// 0008219 // cell death // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0043069 // negative regulation of programmed cell death // not recorded /// 0043069 // negative regulation of programmed cell death // inferred from sequence or structural similarity /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from sequence or structural similarity /// 0043407 // negative regulation of MAP kinase activity // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0046580 // negative regulation of Ras protein signal transduction // not recorded /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0000922 // spindle pole // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005635 // nuclear envelope // not recorded /// 0005643 // nuclear pore // not recorded /// 0005643 // nuclear pore // inferred from sequence or structural similarity /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded /// 0031965 // nuclear membrane // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0017056 // structural constituent of nuclear pore // inferred from electronic annotation /// 0030159 // receptor signaling complex scaffold activity // not recorded /// 0030159 // receptor signaling complex scaffold activity // inferred from sequence or structural similarity /// 0030528 // transcription regulator activity // not recorded /// 0030528 // transcription regulator activity // inferred from sequence or structural similarity /// 0042169 // SH2 domain binding // not recorded /// 0042169 // SH2 domain binding // inferred from sequence or structural similarity /// 0043130 // ubiquitin binding // not recorded /// 0043130 // ubiquitin binding // inferred from sequence or structural similarity /// 0046966 // thyroid hormone receptor binding // not recorded /// 0046966 // thyroid hormone receptor binding // inferred from sequence or structural similarity /// 0051425 // PTB domain binding // not recorded 1370910_at BF283113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283113 /DB_XREF=gi:11214183 /DB_XREF=EST447704 /CLONE=RGIDX69 /FEA=mRNA /CNT=13 /TID=Rn.22905.1 /TIER=Stack /STK=9 /UG=Rn.22905 /LL=116468 /UG_GENE=Rfc2 /UG_TITLE=replication factor C (activator 1) 2 (40kD) BF283113 replication factor C (activator 1) 2 Rfc2 116468 NM_053786 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded /// 0006297 // nucleotide-excision repair, DNA gap filling // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005663 // DNA replication factor C complex // inferred from electronic annotation /// 0005663 // DNA replication factor C complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003689 // DNA clamp loader activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1370911_at U01914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U01914.1 /DB_XREF=gi:1254983 /FEA=mRNA /CNT=17 /TID=Rn.10248.1 /TIER=Stack /STK=9 /UG=Rn.10248 /LL=116633 /UG_GENE=Akap8 /DEF=Rattus norvegicus AKAP95 mRNA, partial cds. /PROD=AKAP95 U01914 A kinase (PRKA) anchor protein 8 Akap8 116633 NM_053855 0007076 // mitotic chromosome condensation // not recorded /// 0007076 // mitotic chromosome condensation // inferred from electronic annotation 0000793 // condensed chromosome // not recorded /// 0000793 // condensed chromosome // inferred from electronic annotation /// 0001939 // female pronucleus // not recorded /// 0001939 // female pronucleus // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016363 // nuclear matrix // inferred from direct assay /// 0016363 // nuclear matrix // not recorded /// 0016363 // nuclear matrix // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0034237 // protein kinase A regulatory subunit binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1370912_at BI278231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278231 /DB_XREF=gi:14924874 /DB_XREF=UI-R-CY0-bxr-a-08-0-UI.s1 /CLONE=UI-R-CY0-bxr-a-08-0-UI /FEA=mRNA /CNT=11 /TID=Rn.81083.1 /TIER=Stack /STK=9 /UG=Rn.81083 /UG_TITLE=R.norvegicus hsp70.2 mRNA for heat shock protein 70 BI278231 heat shock 70kD protein 1A Hspa1a 24472 NM_031971 0000723 // telomere maintenance // not recorded /// 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from direct assay /// 0006281 // DNA repair // not recorded /// 0006402 // mRNA catabolic process // not recorded /// 0006402 // mRNA catabolic process // inferred from sequence or structural similarity /// 0006916 // anti-apoptosis // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0006952 // defense response // inferred from direct assay /// 0006986 // response to unfolded protein // inferred from mutant phenotype /// 0006986 // response to unfolded protein // not recorded /// 0006986 // response to unfolded protein // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0009408 // response to heat // not recorded /// 0030308 // negative regulation of cell growth // not recorded /// 0030308 // negative regulation of cell growth // inferred from sequence or structural similarity /// 0033033 // negative regulation of myeloid cell apoptosis // inferred from direct assay /// 0042026 // protein refolding // not recorded /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0043154 // negative regulation of caspase activity // inferred from direct assay /// 0043154 // negative regulation of caspase activity // not recorded /// 0045906 // negative regulation of vasoconstriction // inferred from mutant phenotype /// 0090084 // negative regulation of inclusion body assembly // not recorded 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0016234 // inclusion body // not recorded /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016607 // nuclear speck // not recorded /// 0016607 // nuclear speck // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0002020 // protease binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0044183 // protein binding involved in protein folding // not recorded /// 0047485 // protein N-terminus binding // not recorded /// 0051059 // NF-kappaB binding // inferred from physical interaction 1370913_at AI409634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409634 /DB_XREF=gi:4253138 /DB_XREF=EST237926 /CLONE=ROVEN80 /FEA=mRNA /CNT=13 /TID=Rn.14882.1 /TIER=Stack /STK=9 /UG=Rn.14882 /UG_TITLE=Rattus norvegicus mRNA Best5 protein AI409634 radical S-adenosyl methionine domain containing 2 Rsad2 65190 NM_138881 0001503 // ossification // inferred from direct assay /// 0009615 // response to virus // inferred from electronic annotation /// 0030278 // regulation of ossification // inferred from direct assay /// 0051607 // defense response to virus // not recorded /// 0051607 // defense response to virus // inferred from sequence or structural similarity /// 0051607 // defense response to virus // inferred from electronic annotation 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation 1370914_at BM384112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384112 /DB_XREF=gi:18184160 /DB_XREF=UI-R-DZ0-cks-f-19-0-UI.s1 /CLONE=UI-R-DZ0-cks-f-19-0-UI /FEA=mRNA /CNT=10 /TID=Rn.33136.1 /TIER=Stack /STK=9 /UG=Rn.33136 /UG_TITLE=Rattus norvegicus unknown mRNA BM384112 deoxynucleotidyltransferase, terminal, interacting protein 1 Dnttip1 171437 NM_134400 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1370915_s_at BM384112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384112 /DB_XREF=gi:18184160 /DB_XREF=UI-R-DZ0-cks-f-19-0-UI.s1 /CLONE=UI-R-DZ0-cks-f-19-0-UI /FEA=mRNA /CNT=10 /TID=Rn.33136.1 /TIER=Stack /STK=9 /UG=Rn.33136 /UG_TITLE=Rattus norvegicus unknown mRNA BM384112 deoxynucleotidyltransferase, terminal, interacting protein 1 Dnttip1 171437 NM_134400 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1370916_at AI406496 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406496 /DB_XREF=gi:4250000 /DB_XREF=EST234782 /CLONE=RBRDL54 /FEA=mRNA /CNT=18 /TID=Rn.11797.1 /TIER=Stack /STK=8 /UG=Rn.11797 /LL=84492 /UG_GENE=Tec /UG_TITLE=tec protein tyrosine kinase AI406496 tec protein tyrosine kinase Tec 84492 NM_053432 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0042246 // tissue regeneration // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1370917_at AI172496 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172496 /DB_XREF=gi:3712536 /DB_XREF=EST218509 /CLONE=RMUCA55 /FEA=mRNA /CNT=17 /TID=Rn.20418.1 /TIER=Stack /STK=8 /UG=Rn.20418 /LL=79245 /UG_GENE=Hsf1 /UG_TITLE=heat shock transcription factor 1 AI172496 heat shock transcription factor 1 Hsf1 79245 NM_024393 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0001892 // embryonic placenta development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0006952 // defense response // inferred from direct assay /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009408 // response to heat // inferred from electronic annotation /// 0009408 // response to heat // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0032720 // negative regulation of tumor necrosis factor production // inferred from electronic annotation /// 0032720 // negative regulation of tumor necrosis factor production // not recorded /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0060136 // embryonic process involved in female pregnancy // inferred from electronic annotation /// 0060136 // embryonic process involved in female pregnancy // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded /// 0045120 // pronucleus // inferred from electronic annotation /// 0045120 // pronucleus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1370918_a_at BI275939 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275939 /DB_XREF=gi:14920363 /DB_XREF=UI-R-CX0-bxi-c-05-0-UI.s1 /CLONE=UI-R-CX0-bxi-c-05-0-UI /FEA=mRNA /CNT=14 /TID=Rn.9723.1 /TIER=Stack /STK=8 /UG=Rn.9723 /LL=116550 /UG_GENE=Atp5c1 /UG_TITLE=ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 BI275939 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 Atp5c1 116550 NM_053825 0006119 // oxidative phosphorylation // non-traceable author statement /// 0006172 // ADP biosynthetic process // inferred from direct assay /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0046034 // ATP metabolic process // inferred from direct assay 0000275 // mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005740 // mitochondrial envelope // non-traceable author statement /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005753 // mitochondrial proton-transporting ATP synthase complex // not recorded /// 0005759 // mitochondrial matrix // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0045261 // proton-transporting ATP synthase complex, catalytic core F(1) // inferred from direct assay /// 0045261 // proton-transporting ATP synthase complex, catalytic core F(1) // inferred from electronic annotation 0016887 // ATPase activity // inferred from mutant phenotype /// 0016887 // ATPase activity // not recorded /// 0046933 // hydrogen ion transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 1370919_at AI103467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103467 /DB_XREF=gi:3708008 /DB_XREF=EST212756 /CLONE=REMCC36 /FEA=mRNA /CNT=12 /TID=Rn.10156.1 /TIER=Stack /STK=8 /UG=Rn.10156 /UG_TITLE=Rattus norvegicus M4 protein mRNA, partial cds AI103467 heterogeneous nuclear ribonucleoprotein M Hnrpm 116655 NM_001109911 /// NM_053876 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0003823 // antigen binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction 1370920_at AI102055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102055 /DB_XREF=gi:3706890 /DB_XREF=EST211344 /CLONE=RBRBY39 /FEA=mRNA /CNT=15 /TID=Rn.17723.1 /TIER=Stack /STK=8 /UG=Rn.17723 /UG_TITLE=Rattus norvegicus clone ZG52 mRNA sequence AI102055 SFRS protein kinase 2 Srpk2 296753 NM_001106575 0000245 // spliceosome assembly // inferred from electronic annotation /// 0000245 // spliceosome assembly // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1370921_at BI281156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281156 /DB_XREF=gi:14930608 /DB_XREF=UI-R-CT0s-cat-a-03-0-UI.s1 /CLONE=UI-R-CT0s-cat-a-03-0-UI /FEA=mRNA /CNT=13 /TID=Rn.9151.1 /TIER=Stack /STK=8 /UG=Rn.9151 /LL=65169 /UG_GENE=Scamp3 /UG_TITLE=secretory carrier membrane protein 3 BI281156 secretory carrier membrane protein 3 Scamp3 65169 NM_031724 0006468 // protein phosphorylation // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0032526 // response to retinoic acid // not recorded /// 0042221 // response to chemical stimulus // not recorded 0000139 // Golgi membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1370922_at L15011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L15011.1 /DB_XREF=gi:294534 /FEA=mRNA /CNT=11 /TID=Rn.9131.1 /TIER=Stack /STK=8 /UG=Rn.9131 /LL=29145 /UG_GENE=Ctxn /UG_TITLE=cortexin /DEF=Rattus norvegicus neuron-specific cortexin mRNA. L15011 cortexin 1 Ctxn1 29145 NM_001109935 0007417 // central nervous system development // non-traceable author statement 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031224 // intrinsic to membrane // inferred from electronic annotation 1370923_at AI014074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI014074 /DB_XREF=gi:3227010 /DB_XREF=EST207629 /CLONE=RSPBE41 /FEA=mRNA /CNT=11 /TID=Rn.36170.1 /TIER=Stack /STK=8 /UG=Rn.36170 /LL=54370 /UG_GENE=Nm23-R6 /UG_TITLE=nucleoside diphosphate kinase type 6 AI014074 non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase) Nme6 58964 NM_001191884 /// XM_001076342 /// XM_343488 0006183 // GTP biosynthetic process // inferred from electronic annotation /// 0006228 // UTP biosynthetic process // inferred from electronic annotation /// 0006241 // CTP biosynthetic process // inferred from electronic annotation /// 0009117 // nucleotide metabolic process // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0045839 // negative regulation of mitosis // not recorded 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004550 // nucleoside diphosphate kinase activity // inferred from electronic annotation /// 0004550 // nucleoside diphosphate kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370924_at BG378607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378607 /DB_XREF=gi:13303079 /DB_XREF=UI-R-CV1-bvr-e-03-0-UI.s1 /CLONE=UI-R-CV1-bvr-e-03-0-UI /FEA=mRNA /CNT=9 /TID=Rn.34871.1 /TIER=Stack /STK=8 /UG=Rn.34871 /UG_TITLE=Rat T-cell receptor active beta-chain C-region mRNA, partial cds, clone TRB4 BG378607 T-cell receptor beta chain Tcrb 24820 0006968 // cellular defense response // inferred from expression pattern 1370925_at BG380816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380816 /DB_XREF=gi:13305288 /DB_XREF=UI-R-CT0-bub-g-04-0-UI.s1 /CLONE=UI-R-CT0-bub-g-04-0-UI /FEA=mRNA /CNT=15 /TID=Rn.11016.1 /TIER=Stack /STK=8 /UG=Rn.11016 /LL=84011 /UG_GENE=Atp9a /UG_TITLE=ATPase, Class II, type 9A BG380816 ATPase, class II, type 9A /// ATPase, class II, type 9B Atp9a /// Atp9b 291411 /// 84011 NM_001106130 /// XM_002726282 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0015914 // phospholipid transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004012 // phospholipid-translocating ATPase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation 1370926_at BM391100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391100 /DB_XREF=gi:18191153 /DB_XREF=UI-R-CN1-cjr-h-18-0-UI.s1 /CLONE=UI-R-CN1-cjr-h-18-0-UI /FEA=mRNA /CNT=9 /TID=Rn.24930.1 /TIER=Stack /STK=8 /UG=Rn.24930 /LL=171578 /UG_GENE=Muc4 /UG_TITLE=mucin 4 BM391100 mucin 4, cell surface associated Muc4 303887 XM_001072593 /// XM_221384 0001953 // negative regulation of cell-matrix adhesion // inferred from direct assay /// 0002853 // negative regulation of T cell mediated cytotoxicity directed against tumor cell target // inferred from direct assay /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007595 // lactation // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0010469 // regulation of receptor activity // inferred from direct assay /// 0022408 // negative regulation of cell-cell adhesion // inferred from direct assay /// 0030879 // mammary gland development // inferred from expression pattern /// 0031077 // post-embryonic camera-type eye development // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0033189 // response to vitamin A // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0046677 // response to antibiotic // inferred from expression pattern /// 0048565 // digestive tract development // inferred from expression pattern /// 0060206 // estrous cycle phase // inferred from expression pattern /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0031528 // microvillus membrane // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005176 // ErbB-2 class receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from direct assay 1370927_at BE108345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108345 /DB_XREF=gi:8500450 /DB_XREF=UI-R-BS1-ayv-b-12-0-UI.s1 /CLONE=UI-R-BS1-ayv-b-12-0-UI /FEA=mRNA /CNT=8 /TID=Rn.11218.1 /TIER=Stack /STK=8 /UG=Rn.11218 /LL=25683 /UG_GENE=Col12a1 /UG_TITLE=Procollagen type XII alpha 1 BE108345 collagen, type XII, alpha 1 Col12a1 25683 XM_001060689 /// XM_243912 0007155 // cell adhesion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005595 // collagen type XII // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // traceable author statement 1370928_at BI284739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284739 /DB_XREF=gi:14937683 /DB_XREF=UI-R-DE0-cad-f-06-0-UI.s1 /CLONE=UI-R-DE0-cad-f-06-0-UI /FEA=mRNA /CNT=27 /TID=Rn.6940.1 /TIER=Stack /STK=7 /UG=Rn.6940 /LL=56723 /UG_GENE=Pig7 /UG_TITLE=LPS-induced TNF-alpha factor BI284739 lipopolysaccharide-induced TNF factor Litaf 65161 NM_001105735 0006350 // transcription // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005813 // centrosome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0050699 // WW domain binding // not recorded /// 0050699 // WW domain binding // inferred from sequence or structural similarity 1370929_at AI170333 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170333 /DB_XREF=gi:3710373 /DB_XREF=EST216259 /CLONE=RLUCH06 /FEA=mRNA /CNT=33 /TID=Rn.10293.1 /TIER=Stack /STK=7 /UG=Rn.10293 /LL=116565 /UG_GENE=Lrpap1 /UG_TITLE=low density lipoprotein receptor-related protein associated protein 1 AI170333 low density lipoprotein receptor-related protein associated protein 1 Lrpap1 116565 NM_001169113 0010916 // negative regulation of very-low-density lipoprotein particle clearance // inferred from electronic annotation /// 0010916 // negative regulation of very-low-density lipoprotein particle clearance // not recorded /// 0032091 // negative regulation of protein binding // inferred from electronic annotation /// 0032091 // negative regulation of protein binding // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0048237 // rough endoplasmic reticulum lumen // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0008201 // heparin binding // inferred from electronic annotation /// 0048019 // receptor antagonist activity // inferred from electronic annotation /// 0048019 // receptor antagonist activity // not recorded /// 0050750 // low-density lipoprotein receptor binding // inferred from electronic annotation /// 0050750 // low-density lipoprotein receptor binding // not recorded /// 0070326 // very-low-density lipoprotein receptor binding // inferred from electronic annotation /// 0070326 // very-low-density lipoprotein receptor binding // not recorded 1370930_at BF417285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417285 /DB_XREF=gi:11405274 /DB_XREF=UI-R-CN0-bky-c-05-0-UI.s1 /CLONE=UI-R-CN0-bky-c-05-0-UI /FEA=mRNA /CNT=33 /TID=Rn.15980.1 /TIER=Stack /STK=7 /UG=Rn.15980 /UG_TITLE=Rattus norvegicus mRNA for a novel kinesin-related protein, KIF1D BF417285 1370931_at AA893188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893188 /DB_XREF=gi:3020067 /DB_XREF=EST196991 /CLONE=RKIBD31 /FEA=mRNA /CNT=13 /TID=Rn.3585.1 /TIER=Stack /STK=7 /UG=Rn.3585 /UG_TITLE=Rattus norvegicus mRNA for Xrcc5, partial cds AA893188 X-ray repair complementing defective repair in Chinese hamster cells 5 Xrcc5 363247 NM_177419 0006302 // double-strand break repair // not recorded /// 0006302 // double-strand break repair // non-traceable author statement /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006303 // double-strand break repair via nonhomologous end joining // not recorded /// 0006303 // double-strand break repair via nonhomologous end joining // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0019047 // provirus integration // not recorded /// 0019059 // initiation of viral infection // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0050769 // positive regulation of neurogenesis // not recorded /// 0050769 // positive regulation of neurogenesis // inferred from electronic annotation /// 0060218 // hemopoietic stem cell differentiation // not recorded /// 0060218 // hemopoietic stem cell differentiation // inferred from electronic annotation /// 0071398 // cellular response to fatty acid // inferred from expression pattern /// 0071475 // cellular hyperosmotic salinity response // inferred from direct assay /// 0071481 // cellular response to X-ray // inferred from direct assay 0000784 // nuclear chromosome, telomeric region // not recorded /// 0000784 // nuclear chromosome, telomeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005958 // DNA-dependent protein kinase-DNA ligase 4 complex // traceable author statement /// 0043234 // protein complex // inferred from direct assay /// 0043564 // Ku70:Ku80 complex // not recorded /// 0043564 // Ku70:Ku80 complex // inferred from electronic annotation /// 0070419 // nonhomologous end joining complex // not recorded /// 0070419 // nonhomologous end joining complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003691 // double-stranded telomeric DNA binding // not recorded /// 0003691 // double-stranded telomeric DNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0042162 // telomeric DNA binding // not recorded /// 0042162 // telomeric DNA binding // inferred from electronic annotation /// 0051575 // 5'-deoxyribose-5-phosphate lyase activity // not recorded /// 0051575 // 5'-deoxyribose-5-phosphate lyase activity // inferred from electronic annotation 1370932_at AI070976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070976 /DB_XREF=gi:3397227 /DB_XREF=UI-R-C2-na-e-08-0-UI.s1 /CLONE=UI-R-C2-na-e-08-0-UI /FEA=mRNA /CNT=11 /TID=Rn.21381.1 /TIER=Stack /STK=7 /UG=Rn.21381 /LL=83469 /UG_GENE=Lrp4 /UG_TITLE=low density lipoprotein receptor-related protein 4 AI070976 low density lipoprotein receptor-related protein 4 Lrp4 83469 NM_031322 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0001942 // hair follicle development // inferred from electronic annotation /// 0001942 // hair follicle development // not recorded /// 0006897 // endocytosis // inferred from electronic annotation /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0009954 // proximal/distal pattern formation // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // not recorded /// 0043113 // receptor clustering // inferred from electronic annotation /// 0043113 // receptor clustering // not recorded /// 0048856 // anatomical structure development // inferred from electronic annotation /// 0048856 // anatomical structure development // not recorded /// 0051124 // synaptic growth at neuromuscular junction // inferred from electronic annotation /// 0051124 // synaptic growth at neuromuscular junction // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370933_at BI275813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275813 /DB_XREF=gi:14920104 /DB_XREF=UI-R-CX0-bxg-h-06-0-UI.s1 /CLONE=UI-R-CX0-bxg-h-06-0-UI /FEA=mRNA /CNT=20 /TID=Rn.8737.1 /TIER=Stack /STK=7 /UG=Rn.8737 /UG_TITLE=R.norvegicus myr3 mRNA for myosin I heavy chain BI275813 myosin IE Myo1e 25484 NM_173101 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0006807 // nitrogen compound metabolic process // inferred from electronic annotation /// 0006807 // nitrogen compound metabolic process // not recorded /// 0030097 // hemopoiesis // not recorded /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0035166 // post-embryonic hemopoiesis // inferred from electronic annotation /// 0035166 // post-embryonic hemopoiesis // not recorded /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0048008 // platelet-derived growth factor receptor signaling pathway // not recorded 0016459 // myosin complex // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay 1370934_at L06821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L06821.1 /DB_XREF=gi:205795 /FEA=mRNA /CNT=13 /TID=Rn.1347.1 /TIER=Stack /STK=7 /UG=Rn.1347 /LL=25281 /UG_GENE=Nup153 /UG_TITLE=Nuclear pore complex protein /DEF=Rat nuclear pore complex protein mRNA sequence. L06821 nucleoporin 153 Nup153 25281 NM_001100470 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370935_at AI105205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105205 /DB_XREF=gi:3705151 /DB_XREF=EST214494 /CLONE=RKIBG91 /FEA=mRNA /CNT=12 /TID=Rn.25519.2 /TIER=Stack /STK=7 /UG=Rn.25519 /LL=85254 /UG_GENE=Ctl1 /UG_TITLE=transporter-like protein AI105205 solute carrier family 44, member 1 Slc44a1 85254 NM_001033852 /// NM_053492 0006810 // transport // inferred from electronic annotation /// 0015871 // choline transport // not recorded /// 0055085 // transmembrane transport // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0015220 // choline transmembrane transporter activity // not recorded 1370936_at AA892345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892345 /DB_XREF=gi:3019224 /DB_XREF=EST196148 /CLONE=RKIAP33 /FEA=mRNA /CNT=11 /TID=Rn.3646.1 /TIER=Stack /STK=7 /UG=Rn.3646 /UG_TITLE=Rat mRNA for dimethylglycine dehydrogenase (EC number 1.5.99.2) AA892345 dimethylglycine dehydrogenase Dmgdh 245961 NM_139102 0006544 // glycine metabolic process // not recorded /// 0006544 // glycine metabolic process // inferred from electronic annotation /// 0006546 // glycine catabolic process // inferred from electronic annotation /// 0019695 // choline metabolic process // traceable author statement /// 0042426 // choline catabolic process // traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation 0004047 // aminomethyltransferase activity // inferred from electronic annotation /// 0005542 // folic acid binding // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0047865 // dimethylglycine dehydrogenase activity // inferred from direct assay /// 0047865 // dimethylglycine dehydrogenase activity // not recorded /// 0047865 // dimethylglycine dehydrogenase activity // traceable author statement /// 0047865 // dimethylglycine dehydrogenase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from direct assay /// 0050660 // FAD or FADH2 binding // traceable author statement 1370937_a_at X74293 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X74293.1 /DB_XREF=gi:437910 /GEN=alpha 7 integrin /FEA=mRNA /CNT=1 /TID=Rn.54492.3 /TIER=ConsEnd /STK=0 /UG=Rn.54492 /LL=81008 /DEF=R.norvegicus mRNA for alpha 7A integrin. /PROD=alpha 7A integrin X74293 integrin, alpha 7 Itga7 81008 NM_030842 0007155 // cell adhesion // inferred from direct assay /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from mutant phenotype /// 0007229 // integrin-mediated signaling pathway // inferred from direct assay /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // not recorded 0005737 // cytoplasm // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0008305 // integrin complex // inferred from electronic annotation /// 0008305 // integrin complex // inferred from mutant phenotype /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0043236 // laminin binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from mutant phenotype /// 0050839 // cell adhesion molecule binding // inferred from direct assay 1370938_at AI535144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535144 /DB_XREF=gi:4449279 /DB_XREF=UI-R-C3-sp-g-07-0-UI.s1 /CLONE=UI-R-C3-sp-g-07-0-UI /FEA=mRNA /CNT=9 /TID=Rn.34753.1 /TIER=Stack /STK=7 /UG=Rn.34753 /UG_TITLE=Rattus norvegicus reg I binding protein I (Rbp1) mRNA, partial cds AI535144 pyridoxal (pyridoxine, vitamin B6) phosphatase Pdxp 727679 NM_001135819 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0033883 // pyridoxal phosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370939_at D90109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D90109.1 /DB_XREF=gi:220717 /FEA=mRNA /CNT=42 /TID=Rn.6215.1 /TIER=Stack /STK=6 /UG=Rn.6215 /LL=25288 /UG_GENE=Facl2 /UG_TITLE=fatty acid Coenzyme A ligase, long chain 2 /DEF=Rat mRNA for long-chain acyl-CoA synthetase (EC 6.2.1.3). D90109 acyl-CoA synthetase long-chain family member 1 Acsl1 25288 NM_012820 0006629 // lipid metabolic process // traceable author statement /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from mutant phenotype /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from genetic interaction /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0015908 // fatty acid transport // inferred from genetic interaction /// 0034201 // response to oleic acid // inferred from expression pattern /// 0042178 // xenobiotic catabolic process // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0046320 // regulation of fatty acid oxidation // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003987 // acetate-CoA ligase activity // traceable author statement /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from direct assay /// 0004467 // long-chain fatty acid-CoA ligase activity // not recorded /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1370940_at BG378746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378746 /DB_XREF=gi:13303218 /DB_XREF=UI-R-CV1-bvs-d-05-0-UI.s1 /CLONE=UI-R-CV1-bvs-d-05-0-UI /FEA=mRNA /CNT=21 /TID=Rn.10965.1 /TIER=Stack /STK=6 /UG=Rn.10965 /LL=115769 /UG_GENE=Tjp2 /UG_TITLE=tight junction protein 2 BG378746 tight junction protein 2 Tjp2 115769 NM_053773 0010033 // response to organic substance // inferred from expression pattern 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005921 // gap junction // inferred from direct assay /// 0005923 // tight junction // inferred from direct assay /// 0005923 // tight junction // inferred from electronic annotation /// 0030054 // cell junction // not recorded /// 0030054 // cell junction // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction 1370941_at AI232379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232379 /DB_XREF=gi:3816259 /DB_XREF=EST229067 /CLONE=RKICA94 /FEA=mRNA /CNT=32 /TID=Rn.55127.1 /TIER=Stack /STK=6 /UG=Rn.55127 /LL=25267 /UG_GENE=Pdgfra /UG_TITLE=Platelet-derived growth factor receptor alpha AI232379 platelet derived growth factor receptor, alpha polypeptide Pdgfra 25267 NM_012802 0001553 // luteinization // inferred from electronic annotation /// 0001553 // luteinization // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0008210 // estrogen metabolic process // inferred from electronic annotation /// 0008210 // estrogen metabolic process // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008585 // female gonad development // not recorded /// 0008585 // female gonad development // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // not recorded /// 0009653 // anatomical structure morphogenesis // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030325 // adrenal gland development // inferred from electronic annotation /// 0030325 // adrenal gland development // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0030539 // male genitalia development // inferred from electronic annotation /// 0030539 // male genitalia development // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0033327 // Leydig cell differentiation // inferred from electronic annotation /// 0033327 // Leydig cell differentiation // not recorded /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042060 // wound healing // inferred from expression pattern /// 0042063 // gliogenesis // inferred from expression pattern /// 0042063 // gliogenesis // non-traceable author statement /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // not recorded /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0048008 // platelet-derived growth factor receptor signaling pathway // not recorded /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // not recorded /// 0048839 // inner ear development // inferred from expression pattern /// 0055093 // response to hyperoxia // inferred from expression pattern /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded /// 0060325 // face morphogenesis // inferred from electronic annotation /// 0060325 // face morphogenesis // not recorded 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005018 // platelet-derived growth factor alpha-receptor activity // inferred from direct assay /// 0005018 // platelet-derived growth factor alpha-receptor activity // not recorded /// 0005018 // platelet-derived growth factor alpha-receptor activity // traceable author statement /// 0005018 // platelet-derived growth factor alpha-receptor activity // inferred from electronic annotation /// 0005021 // vascular endothelial growth factor receptor activity // inferred from electronic annotation /// 0005021 // vascular endothelial growth factor receptor activity // not recorded /// 0005161 // platelet-derived growth factor receptor binding // inferred from electronic annotation /// 0005161 // platelet-derived growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded /// 0019838 // growth factor binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction /// 0046983 // protein dimerization activity // non-traceable author statement /// 0048407 // platelet-derived growth factor binding // inferred from electronic annotation /// 0048407 // platelet-derived growth factor binding // not recorded 1370942_at AI170661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170661 /DB_XREF=gi:3710701 /DB_XREF=EST216596 /CLONE=RMUAZ60 /FEA=mRNA /CNT=10 /TID=Rn.23055.1 /TIER=Stack /STK=6 /UG=Rn.23055 /LL=29372 /UG_GENE=Rasa3 /UG_TITLE=RAS p21 protein activator 3 AI170661 RAS p21 protein activator 3 Rasa3 29372 NM_031574 0007165 // signal transduction // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0031235 // intrinsic to internal side of plasma membrane // not recorded 0005096 // GTPase activator activity // inferred from electronic annotation /// 0015278 // calcium-release channel activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1370943_at AI168953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI168953 /DB_XREF=gi:3705261 /DB_XREF=EST214781 /CLONE=RKIBL14 /FEA=mRNA /CNT=14 /TID=Rn.22471.1 /TIER=Stack /STK=6 /UG=Rn.22471 /UG_TITLE=Rattus norvegicus mRNA for Sulfotransferase K2 AI168953 sulfotransferase family, cytosolic, 1C, member 2 /// sulfotransferase family, cytosolic, 1C, member 2a Sult1c2 /// Sult1c2a 171072 /// 316153 NM_001013177 /// NM_133547 0051923 // sulfation // not recorded 0005764 // lysosome // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0008146 // sulfotransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation 1370944_at AI230238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230238 /DB_XREF=gi:4135527 /DB_XREF=EST226933 /CLONE=REMCU02 /FEA=mRNA /CNT=13 /TID=Rn.20579.1 /TIER=Stack /STK=6 /UG=Rn.20579 /LL=25681 /UG_GENE=Col10a1 /UG_TITLE=Collagen type X alpha 1 AI230238 collagen, type X, alpha 1 Col10a1 25681 XM_001053056 /// XM_002725875 0001958 // endochondral ossification // inferred from mutant phenotype /// 0051216 // cartilage development // inferred from mutant phenotype 0005578 // proteinaceous extracellular matrix // inferred from direct assay /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005938 // cell cortex // not recorded 0005201 // extracellular matrix structural constituent // traceable author statement 1370945_at BF282728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282728 /DB_XREF=gi:11213798 /DB_XREF=EST447319 /CLONE=RGIDS24 /FEA=mRNA /CNT=8 /TID=Rn.12041.1 /TIER=Stack /STK=6 /UG=Rn.12041 /LL=114089 /UG_GENE=Inpp5e /UG_TITLE=inositol polyphosphate 5-phosphatase BF282728 SEC16 homolog A (S. cerevisiae) Sec16a 114089 XM_002726072 /// XM_002729145 0006629 // lipid metabolic process // inferred from electronic annotation /// 0010976 // positive regulation of neuron projection development // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005929 // cilium // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0035085 // cilium axoneme // inferred from sequence or structural similarity /// 0035085 // cilium axoneme // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0004439 // phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity // inferred from electronic annotation /// 0004445 // inositol-polyphosphate 5-phosphatase activity // inferred from mutant phenotype /// 0016787 // hydrolase activity // inferred from electronic annotation 1370946_at BF420722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420722 /DB_XREF=gi:11408711 /DB_XREF=UI-R-BJ2-bpz-c-11-0-UI.s1 /CLONE=UI-R-BJ2-bpz-c-11-0-UI /FEA=mRNA /CNT=9 /TID=Rn.9647.1 /TIER=Stack /STK=6 /UG=Rn.9647 /LL=81524 /UG_GENE=Nfix /UG_TITLE=NF1-X1 protein BF420722 nuclear factor I/X (CCAAT-binding transcription factor) Nfix 81524 NM_030866 0006260 // DNA replication // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation 1370947_at AI228197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228197 /DB_XREF=gi:3812084 /DB_XREF=EST224892 /CLONE=RBRCR71 /FEA=mRNA /CNT=6 /TID=Rn.24842.1 /TIER=Stack /STK=6 /UG=Rn.24842 /UG_TITLE=Rattus norvegicus hypothetical protein RDA279 mRNA, partial cds AI228197 SET domain containing 4 Setd4 245975 NM_001113747 1370948_a_at M59859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M59859.1 /DB_XREF=gi:205068 /FEA=mRNA /CNT=111 /TID=Rn.9560.1 /TIER=ConsEnd /STK=1 /UG=Rn.9560 /LL=25603 /UG_GENE=Macs /UG_TITLE=Myristoylated alanine-rich protein kinase C substrate /DEF=Rat mRNA. M59859 myristoylated alanine rich protein kinase C substrate Marcks 25603 XM_002728965 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0042585 // germinal vesicle // inferred from electronic annotation /// 0042585 // germinal vesicle // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005080 // protein kinase C binding // inferred from electronic annotation /// 0005080 // protein kinase C binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation 1370949_at M59859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M59859.1 /DB_XREF=gi:205068 /FEA=mRNA /CNT=111 /TID=Rn.9560.1 /TIER=ConsEnd /STK=1 /UG=Rn.9560 /LL=25603 /UG_GENE=Macs /UG_TITLE=Myristoylated alanine-rich protein kinase C substrate /DEF=Rat mRNA. M59859 myristoylated alanine rich protein kinase C substrate Marcks 25603 XM_002728965 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0042585 // germinal vesicle // inferred from electronic annotation /// 0042585 // germinal vesicle // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005080 // protein kinase C binding // inferred from electronic annotation /// 0005080 // protein kinase C binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation 1370950_at AW253995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253995 /DB_XREF=gi:6597586 /DB_XREF=UI-R-BJ0-aed-h-07-0-UI.s1 /CLONE=UI-R-BJ0-aed-h-07-0-UI /FEA=mRNA /CNT=22 /TID=Rn.34354.1 /TIER=Stack /STK=19 /UG=Rn.34354 /UG_TITLE=R.norvegicus mRNA for ER transmembrane protein AW253995 phosphatidic acid phosphatase type 2B Ppap2b 192270 NM_138905 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // not recorded /// 0001933 // negative regulation of protein phosphorylation // not recorded /// 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // not recorded /// 0016311 // dephosphorylation // not recorded /// 0030111 // regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030111 // regulation of Wnt receptor signaling pathway // not recorded /// 0034109 // homotypic cell-cell adhesion // not recorded /// 0050821 // protein stabilization // not recorded /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008195 // phosphatidate phosphatase activity // inferred from electronic annotation /// 0008195 // phosphatidate phosphatase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042392 // sphingosine-1-phosphate phosphatase activity // not recorded /// 0042577 // lipid phosphatase activity // inferred from electronic annotation /// 0042577 // lipid phosphatase activity // not recorded 1370951_at Y07783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y07783.1 /DB_XREF=gi:1684744 /GEN=Dri 42 /FEA=mRNA /CNT=22 /TID=Rn.34354.1 /TIER=ConsEnd /STK=0 /UG=Rn.34354 /DEF=R.norvegicus mRNA for ER transmembrane protein. /PROD=ER transmembrane protein Y07783 phosphatidic acid phosphatase type 2B Ppap2b 192270 NM_138905 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // not recorded /// 0001933 // negative regulation of protein phosphorylation // not recorded /// 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // not recorded /// 0016311 // dephosphorylation // not recorded /// 0030111 // regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030111 // regulation of Wnt receptor signaling pathway // not recorded /// 0034109 // homotypic cell-cell adhesion // not recorded /// 0050821 // protein stabilization // not recorded /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008195 // phosphatidate phosphatase activity // inferred from electronic annotation /// 0008195 // phosphatidate phosphatase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042392 // sphingosine-1-phosphate phosphatase activity // not recorded /// 0042577 // lipid phosphatase activity // inferred from electronic annotation /// 0042577 // lipid phosphatase activity // not recorded 1370952_at AI169331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169331 /DB_XREF=gi:4134387 /DB_XREF=EST215167 /CLONE=RKIBQ36 /FEA=mRNA /CNT=48 /TID=Rn.625.2 /TIER=Stack /STK=11 /UG=Rn.625 /LL=24424 /UG_GENE=Gstm2 /UG_TITLE=Glutathione-S-transferase, mu type 2 (Yb2) AI169331 glutathione S-transferase mu 2 Gstm2 24424 NM_177426 0006805 // xenobiotic metabolic process // traceable author statement /// 0007568 // aging // inferred from expression pattern /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0050896 // response to stimulus // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay 0004364 // glutathione transferase activity // inferred from electronic annotation /// 0004364 // glutathione transferase activity // inferred from mutant phenotype /// 0004364 // glutathione transferase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation 1370953_at BE113639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113639 /DB_XREF=gi:8505744 /DB_XREF=UI-R-BJ1-awg-f-04-0-UI.s1 /CLONE=UI-R-BJ1-awg-f-04-0-UI /FEA=mRNA /CNT=15 /TID=Rn.38769.1 /TIER=Stack /STK=11 /UG=Rn.38769 /LL=60380 /UG_GENE=LOC60380 /UG_TITLE=growth and transformation-dependent protein BE113639 coiled-coil domain containing 58 Ccdc58 288065 NM_001105875 0005739 // mitochondrion // not recorded 1370954_at BI274401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274401 /DB_XREF=gi:14885280 /DB_XREF=UI-R-CW0-bwi-e-04-0-UI.s1 /CLONE=UI-R-CW0-bwi-e-04-0-UI /FEA=mRNA /CNT=28 /TID=Rn.8531.1 /TIER=Stack /STK=9 /UG=Rn.8531 /LL=64475 /UG_GENE=P4ha1 /UG_TITLE=prolyl 4-hydroxylase alpha subunit BI274401 prolyl 4-hydroxylase, alpha polypeptide I P4ha1 64475 NM_172062 0008152 // metabolic process // not recorded /// 0018401 // peptidyl-proline hydroxylation to 4-hydroxy-L-proline // not recorded /// 0018401 // peptidyl-proline hydroxylation to 4-hydroxy-L-proline // traceable author statement /// 0030199 // collagen fibril organization // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 0004656 // procollagen-proline 4-dioxygenase activity // not recorded /// 0004656 // procollagen-proline 4-dioxygenase activity // traceable author statement /// 0004656 // procollagen-proline 4-dioxygenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370955_at BI300565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300565 /DB_XREF=gi:14976845 /DB_XREF=UI-R-CV2-cim-e-01-0-UI.s1 /CLONE=UI-R-CV2-cim-e-01-0-UI /FEA=mRNA /CNT=11 /TID=Rn.42924.1 /TIER=Stack /STK=9 /UG=Rn.42924 /LL=29650 /UG_GENE=Adam10 /UG_TITLE=A disintegrin and metalloprotease domain (ADAM) 10 BI300565 ADAM metallopeptidase domain 10 Adam10 29650 XM_001054737 /// XM_217197 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006508 // proteolysis // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0006509 // membrane protein ectodomain proteolysis // inferred from sequence or structural similarity /// 0007162 // negative regulation of cell adhesion // not recorded /// 0007162 // negative regulation of cell adhesion // inferred from sequence or structural similarity /// 0007219 // Notch signaling pathway // not recorded /// 0007219 // Notch signaling pathway // inferred from sequence or structural similarity /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0010820 // positive regulation of T cell chemotaxis // not recorded /// 0030307 // positive regulation of cell growth // not recorded /// 0030335 // positive regulation of cell migration // not recorded /// 0034612 // response to tumor necrosis factor // not recorded /// 0042117 // monocyte activation // not recorded /// 0043526 // neuroprotection // inferred from expression pattern /// 0045670 // regulation of osteoclast differentiation // non-traceable author statement /// 0051088 // PMA-inducible membrane protein ectodomain proteolysis // not recorded /// 0051089 // constitutive protein ectodomain proteolysis // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005798 // Golgi-associated vesicle // not recorded /// 0005798 // Golgi-associated vesicle // inferred from sequence or structural similarity /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0014069 // postsynaptic density // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004175 // endopeptidase activity // not recorded /// 0004222 // metalloendopeptidase activity // inferred from direct assay /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // not recorded /// 0008237 // metallopeptidase activity // inferred from sequence or structural similarity /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1370956_at BM390253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390253 /DB_XREF=gi:18190306 /DB_XREF=UI-R-CN1-cjq-m-09-0-UI.s1 /CLONE=UI-R-CN1-cjq-m-09-0-UI /FEA=mRNA /CNT=63 /TID=Rn.3819.1 /TIER=Stack /STK=8 /UG=Rn.3819 /LL=29139 /UG_GENE=Dcn /UG_TITLE=decorin BM390253 decorin Dcn 29139 NM_024129 0001822 // kidney development // inferred from expression pattern /// 0001890 // placenta development // inferred from expression pattern /// 0007519 // skeletal muscle tissue development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0019800 // peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan // inferred from electronic annotation /// 0019800 // peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0042060 // wound healing // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from direct assay /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005589 // collagen type VI // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005518 // collagen binding // inferred from direct assay /// 0005539 // glycosaminoglycan binding // inferred from electronic annotation /// 0005539 // glycosaminoglycan binding // not recorded /// 0047485 // protein N-terminus binding // inferred from direct assay /// 0050840 // extracellular matrix binding // inferred from electronic annotation /// 0050840 // extracellular matrix binding // not recorded 1370957_at BM383427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383427 /DB_XREF=gi:18183480 /DB_XREF=UI-R-DM1-ckb-h-16-0-UI.s1 /CLONE=UI-R-DM1-ckb-h-16-0-UI /FEA=mRNA /CNT=14 /TID=Rn.12138.1 /TIER=Stack /STK=7 /UG=Rn.12138 /LL=25205 /UG_GENE=Il6st /UG_TITLE=Interleukin 6 signal transducer BM383427 interleukin 6 signal transducer Il6st 25205 NM_001008725 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // not recorded /// 0006642 // triglyceride mobilization // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007259 // JAK-STAT cascade // inferred from mutant phenotype /// 0007584 // response to nutrient // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008593 // regulation of Notch signaling pathway // inferred from electronic annotation /// 0008593 // regulation of Notch signaling pathway // not recorded /// 0014911 // positive regulation of smooth muscle cell migration // inferred from mutant phenotype /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // traceable author statement /// 0034097 // response to cytokine stimulus // inferred from electronic annotation /// 0034097 // response to cytokine stimulus // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0042511 // positive regulation of tyrosine phosphorylation of Stat1 protein // inferred from electronic annotation /// 0042511 // positive regulation of tyrosine phosphorylation of Stat1 protein // not recorded /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // inferred from electronic annotation /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0046883 // regulation of hormone secretion // traceable author statement /// 0048711 // positive regulation of astrocyte differentiation // inferred from electronic annotation /// 0048711 // positive regulation of astrocyte differentiation // not recorded /// 0048861 // leukemia inhibitory factor signaling pathway // inferred from electronic annotation /// 0048861 // leukemia inhibitory factor signaling pathway // not recorded /// 0051481 // reduction of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0070104 // negative regulation of interleukin-6-mediated signaling pathway // inferred from electronic annotation /// 0070104 // negative regulation of interleukin-6-mediated signaling pathway // not recorded /// 0070106 // interleukin-27-mediated signaling pathway // inferred from electronic annotation /// 0070106 // interleukin-27-mediated signaling pathway // not recorded /// 0070120 // ciliary neurotrophic factor-mediated signaling pathway // inferred from electronic annotation /// 0070120 // ciliary neurotrophic factor-mediated signaling pathway // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005896 // interleukin-6 receptor complex // inferred from electronic annotation /// 0005896 // interleukin-6 receptor complex // not recorded /// 0005900 // oncostatin-M receptor complex // inferred from electronic annotation /// 0005900 // oncostatin-M receptor complex // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0070110 // ciliary neurotrophic factor receptor complex // inferred from electronic annotation /// 0070110 // ciliary neurotrophic factor receptor complex // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004897 // ciliary neurotrophic factor receptor activity // not recorded /// 0004897 // ciliary neurotrophic factor receptor activity // inferred from electronic annotation /// 0004915 // interleukin-6 receptor activity // inferred from electronic annotation /// 0004915 // interleukin-6 receptor activity // not recorded /// 0004921 // interleukin-11 receptor activity // inferred from electronic annotation /// 0004921 // interleukin-11 receptor activity // not recorded /// 0004923 // leukemia inhibitory factor receptor activity // inferred from electronic annotation /// 0004923 // leukemia inhibitory factor receptor activity // not recorded /// 0004924 // oncostatin-M receptor activity // inferred from electronic annotation /// 0004924 // oncostatin-M receptor activity // not recorded /// 0005125 // cytokine activity // traceable author statement /// 0005127 // ciliary neurotrophic factor receptor binding // inferred from electronic annotation /// 0005127 // ciliary neurotrophic factor receptor binding // not recorded /// 0005138 // interleukin-6 receptor binding // inferred from electronic annotation /// 0005138 // interleukin-6 receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded /// 0019838 // growth factor binding // inferred from electronic annotation /// 0019970 // interleukin-11 binding // not recorded /// 0019970 // interleukin-11 binding // inferred from electronic annotation /// 0019981 // interleukin-6 binding // not recorded /// 0019981 // interleukin-6 binding // inferred from electronic annotation 1370958_at M84210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M84210.1 /DB_XREF=gi:205044 /FEA=mRNA /CNT=8 /TID=Rn.9885.2 /TIER=ConsEnd /STK=0 /UG=Rn.9885 /LL=117101 /UG_GENE=Kcnc3 /UG_TITLE=potassium voltage gated channel, Shaw-related subfamily, member 3 /DEF=Rattus norvegicus mRNA sequence. M84210 potassium voltage gated channel, Shaw-related subfamily, member 3 Kcnc3 117101 NM_053997 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1370959_at BI275716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275716 /DB_XREF=gi:14919912 /DB_XREF=UI-R-CW0-bwm-h-05-0-UI.s1 /CLONE=UI-R-CW0-bwm-h-05-0-UI /FEA=mRNA /CNT=70 /TID=Rn.3247.1 /TIER=Stack /STK=6 /UG=Rn.3247 /LL=84032 /UG_GENE=Col3a1 /UG_TITLE=procollagen, type III, alpha 1 BI275716 collagen, type III, alpha 1 Col3a1 84032 NM_032085 0001501 // skeletal system development // inferred from expression pattern /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0009314 // response to radiation // inferred from electronic annotation /// 0009314 // response to radiation // not recorded /// 0018149 // peptide cross-linking // inferred from electronic annotation /// 0018149 // peptide cross-linking // not recorded /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0030199 // collagen fibril organization // not recorded /// 0032964 // collagen biosynthetic process // inferred from electronic annotation /// 0032964 // collagen biosynthetic process // not recorded /// 0034097 // response to cytokine stimulus // inferred from electronic annotation /// 0034097 // response to cytokine stimulus // not recorded /// 0042060 // wound healing // not recorded /// 0043206 // fibril organization // inferred from electronic annotation /// 0043206 // fibril organization // not recorded /// 0043588 // skin development // inferred from electronic annotation /// 0043588 // skin development // not recorded /// 0048565 // digestive tract development // inferred from electronic annotation /// 0048565 // digestive tract development // not recorded /// 0050777 // negative regulation of immune response // inferred from electronic annotation /// 0050777 // negative regulation of immune response // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen // inferred from electronic annotation /// 0005581 // collagen // not recorded /// 0005586 // collagen type III // not recorded /// 0005586 // collagen type III // traceable author statement /// 0005586 // collagen type III // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation 0005178 // integrin binding // not recorded /// 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046332 // SMAD binding // not recorded /// 0048407 // platelet-derived growth factor binding // inferred from electronic annotation /// 0048407 // platelet-derived growth factor binding // not recorded 1370960_at BE104060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104060 /DB_XREF=gi:8496160 /DB_XREF=UI-R-BX0-ark-c-06-0-UI.s1 /CLONE=UI-R-BX0-ark-c-06-0-UI /FEA=mRNA /CNT=45 /TID=Rn.1593.1 /TIER=Stack /STK=6 /UG=Rn.1593 /UG_TITLE=Rattus norvegicus insulin-like growth factor binding protein 5 mRNA, 3 prime UTR BE104060 insulin-like growth factor binding protein 5 Igfbp5 25285 NM_012817 0001558 // regulation of cell growth // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0014912 // negative regulation of smooth muscle cell migration // inferred from electronic annotation /// 0014912 // negative regulation of smooth muscle cell migration // not recorded /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0017148 // negative regulation of translation // not recorded /// 0023034 // intracellular signaling pathway // inferred from expression pattern /// 0030336 // negative regulation of cell migration // not recorded /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0043569 // negative regulation of insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0043569 // negative regulation of insulin-like growth factor receptor signaling pathway // not recorded /// 0048630 // skeletal muscle tissue growth // inferred from expression pattern /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048662 // negative regulation of smooth muscle cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005520 // insulin-like growth factor binding // inferred from direct assay /// 0005520 // insulin-like growth factor binding // not recorded /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation /// 0031994 // insulin-like growth factor I binding // inferred from electronic annotation /// 0031994 // insulin-like growth factor I binding // not recorded 1370961_at BI282349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282349 /DB_XREF=gi:14933028 /DB_XREF=UI-R-CU0s-cbz-e-10-0-UI.s1 /CLONE=UI-R-CU0s-cbz-e-10-0-UI /FEA=mRNA /CNT=9 /TID=Rn.80835.1 /TIER=Stack /STK=6 /UG=Rn.80835 /UG_TITLE=Rat mRNA for delta3, delta2-enoyl-CoA isomerase BI282349 dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenzyme A isomerase) Dci 29740 NM_017306 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // not recorded /// 0006635 // fatty acid beta-oxidation // traceable author statement /// 0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004165 // dodecenoyl-CoA delta-isomerase activity // inferred from direct assay /// 0004165 // dodecenoyl-CoA delta-isomerase activity // not recorded /// 0004165 // dodecenoyl-CoA delta-isomerase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay 1370962_at AI136555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136555 /DB_XREF=gi:3637332 /DB_XREF=UI-R-C2p-nw-c-05-0-UI.s1 /CLONE=UI-R-C2p-nw-c-05-0-UI /FEA=mRNA /CNT=8 /TID=Rn.21667.1 /TIER=Stack /STK=6 /UG=Rn.21667 /UG_TITLE=Rattus norvegicus mRNA for Castration Induced Prostatic Apoptosis Related protein-1 (CIPAR-1) AI136555 prostate androgen-regulated mucin-like protein 1 Parm1 286894 NM_173114 0006915 // apoptosis // non-traceable author statement /// 0051973 // positive regulation of telomerase activity // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from sequence or structural similarity /// 0005769 // early endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005770 // late endosome // inferred from sequence or structural similarity /// 0005770 // late endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1370963_at AJ131902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ131902.1 /DB_XREF=gi:4090268 /GEN=gas-7 /FEA=mRNA /CNT=22 /TID=Rn.17160.1 /TIER=ConsEnd /STK=5 /UG=Rn.17160 /LL=85246 /DEF=Rattus norvegicus mRNA for GAS-7 protein. /PROD=GAS-7 protein AJ131902 growth arrest specific 7 Gas7 85246 NM_053484 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0030041 // actin filament polymerization // inferred from electronic annotation /// 0030041 // actin filament polymerization // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0048812 // neuron projection morphogenesis // inferred from electronic annotation /// 0048812 // neuron projection morphogenesis // not recorded /// 0051017 // actin filament bundle assembly // inferred from electronic annotation /// 0051017 // actin filament bundle assembly // not recorded 0001726 // ruffle // inferred from electronic annotation /// 0001726 // ruffle // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005884 // actin filament // inferred from electronic annotation /// 0005884 // actin filament // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1370964_at BF283456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283456 /DB_XREF=gi:11214526 /DB_XREF=EST448047 /CLONE=RGIEC25 /FEA=mRNA /CNT=14 /TID=Rn.5078.1 /TIER=ConsEnd /STK=5 /UG=Rn.5078 /LL=25698 /UG_GENE=Ass /UG_TITLE=Arginosuccinate synthetase 1 BF283456 argininosuccinate synthetase 1 Ass1 25698 NM_013157 0000050 // urea cycle // inferred from direct assay /// 0000050 // urea cycle // inferred from electronic annotation /// 0000053 // argininosuccinate metabolic process // inferred from direct assay /// 0001101 // response to acid // inferred from expression pattern /// 0001822 // kidney development // inferred from expression pattern /// 0001889 // liver development // inferred from expression pattern /// 0006526 // arginine biosynthetic process // inferred from direct assay /// 0006526 // arginine biosynthetic process // inferred from electronic annotation /// 0006953 // acute-phase response // inferred from expression pattern /// 0007494 // midgut development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009607 // response to biotic stimulus // inferred from direct assay /// 0010043 // response to zinc ion // inferred from direct assay /// 0010046 // response to mycotoxin // inferred from expression pattern /// 0014075 // response to amine stimulus // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from direct assay /// 0060416 // response to growth hormone stimulus // inferred from expression pattern /// 0060539 // diaphragm development // inferred from expression pattern /// 0070542 // response to fatty acid // inferred from expression pattern /// 0071222 // cellular response to lipopolysaccharide // inferred from expression pattern /// 0071230 // cellular response to amino acid stimulus // inferred from expression pattern /// 0071242 // cellular response to ammonium ion // inferred from expression pattern /// 0071320 // cellular response to cAMP // inferred from expression pattern /// 0071346 // cellular response to interferon-gamma // inferred from expression pattern /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern /// 0071377 // cellular response to glucagon stimulus // inferred from expression pattern /// 0071400 // cellular response to oleic acid // inferred from expression pattern /// 0071418 // cellular response to amine stimulus // inferred from expression pattern /// 0071549 // cellular response to dexamethasone stimulus // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0070852 // cell body fiber // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004055 // argininosuccinate synthase activity // inferred from direct assay /// 0004055 // argininosuccinate synthase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0015643 // toxin binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation 1370965_at BG381660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381660 /DB_XREF=gi:13306132 /DB_XREF=UI-R-CT0-bud-h-07-0-UI.s1 /CLONE=UI-R-CT0-bud-h-07-0-UI /FEA=mRNA /CNT=8 /TID=Rn.10600.1 /TIER=ConsEnd /STK=5 /UG=Rn.10600 /LL=25705 /UG_GENE=Tcf8 /UG_TITLE=Transcription factor 8 BG381660 zinc finger E-box binding homeobox 1 Zeb1 25705 NM_013164 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010464 // regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0010464 // regulation of mesenchymal cell proliferation // not recorded /// 0014823 // response to activity // inferred from expression pattern /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0030857 // negative regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030857 // negative regulation of epithelial cell differentiation // not recorded /// 0030900 // forebrain development // inferred from expression pattern /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0033081 // regulation of T cell differentiation in thymus // inferred from electronic annotation /// 0033081 // regulation of T cell differentiation in thymus // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048596 // embryonic camera-type eye morphogenesis // inferred from electronic annotation /// 0048596 // embryonic camera-type eye morphogenesis // not recorded /// 0048598 // embryonic morphogenesis // inferred from electronic annotation /// 0048598 // embryonic morphogenesis // not recorded /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0051150 // regulation of smooth muscle cell differentiation // inferred from electronic annotation /// 0051150 // regulation of smooth muscle cell differentiation // not recorded /// 0051216 // cartilage development // inferred from electronic annotation /// 0051216 // cartilage development // not recorded /// 0071560 // cellular response to transforming growth factor beta stimulus // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from mutant phenotype /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370966_at AW532988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532988 /DB_XREF=gi:7175402 /DB_XREF=UI-R-BU0-amy-e-05-0-UI.s1 /CLONE=UI-R-BU0-amy-e-05-0-UI /FEA=mRNA /CNT=7 /TID=Rn.23602.1 /TIER=ConsEnd /STK=5 /UG=Rn.23602 /LL=114244 /UG_GENE=Hcn2 /UG_TITLE=hyperpolarization activated cyclic nucleotide-gated potassium channel 2 AW532988 hyperpolarization activated cyclic nucleotide-gated potassium channel 2 Hcn2 114244 NM_053684 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045823 // positive regulation of heart contraction // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0030552 // cAMP binding // inferred from electronic annotation /// 0032947 // protein complex scaffold // inferred from direct assay 1370967_at BG374683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374683 /DB_XREF=gi:13299155 /DB_XREF=UI-R-CV1-bsq-c-01-0-UI.s1 /CLONE=UI-R-CV1-bsq-c-01-0-UI /FEA=mRNA /CNT=11 /TID=Rn.129.1 /TIER=ConsEnd /STK=4 /UG=Rn.129 /UG_TITLE=Rat Ig active lambda2-like chain mRNA, 3 end BG374683 similar to immunoglobulin light chain variable region RGD1564318 363828 0003823 // antigen binding // inferred from electronic annotation 1370968_at AA858801 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858801 /DB_XREF=gi:4228994 /DB_XREF=UI-R-A0-bn-f-11-0-UI.s1 /CLONE=UI-R-A0-bn-f-11-0-UI /FEA=mRNA /CNT=12 /TID=Rn.2411.1 /TIER=ConsEnd /STK=4 /UG=Rn.2411 /LL=81736 /UG_GENE=Nfkb1 /UG_TITLE=nuclear factor kappa B p105 subunit AA858801 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 Nfkb1 81736 XM_001075876 /// XM_342346 0001818 // negative regulation of cytokine production // inferred from electronic annotation /// 0001818 // negative regulation of cytokine production // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0006916 // anti-apoptosis // not recorded /// 0006979 // response to oxidative stress // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0009617 // response to bacterium // inferred from expression pattern /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010956 // negative regulation of calcidiol 1-monooxygenase activity // not recorded /// 0031293 // membrane protein intracellular domain proteolysis // not recorded /// 0045083 // negative regulation of interleukin-12 biosynthetic process // inferred from electronic annotation /// 0045083 // negative regulation of interleukin-12 biosynthetic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046688 // response to copper ion // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from direct assay /// 0016566 // specific transcriptional repressor activity // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // not recorded /// 0031072 // heat shock protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046983 // protein dimerization activity // inferred from direct assay 1370969_at BE107303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107303 /DB_XREF=gi:8499408 /DB_XREF=UI-R-BS1-ays-b-12-0-UI.s1 /CLONE=UI-R-BS1-ays-b-12-0-UI /FEA=mRNA /CNT=12 /TID=Rn.8465.1 /TIER=ConsEnd /STK=4 /UG=Rn.8465 /LL=79241 /UG_GENE=Hoxa5 /UG_TITLE=homeo box A5 BE107303 homeo box A5 Hoxa5 79241 XM_001059031 /// XM_001064984 0001501 // skeletal system development // not recorded /// 0001501 // skeletal system development // inferred from electronic annotation /// 0002009 // morphogenesis of an epithelium // inferred from electronic annotation /// 0002009 // morphogenesis of an epithelium // not recorded /// 0003016 // respiratory system process // inferred from electronic annotation /// 0003016 // respiratory system process // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007389 // pattern specification process // traceable author statement /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // not recorded /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0010870 // positive regulation of receptor biosynthetic process // inferred from electronic annotation /// 0010870 // positive regulation of receptor biosynthetic process // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016525 // negative regulation of angiogenesis // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // not recorded /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030878 // thyroid gland development // inferred from electronic annotation /// 0030878 // thyroid gland development // not recorded /// 0033599 // regulation of mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0033599 // regulation of mammary gland epithelial cell proliferation // not recorded /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045639 // positive regulation of myeloid cell differentiation // inferred from electronic annotation /// 0045639 // positive regulation of myeloid cell differentiation // not recorded /// 0045647 // negative regulation of erythrocyte differentiation // inferred from electronic annotation /// 0045647 // negative regulation of erythrocyte differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048286 // lung alveolus development // not recorded /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048706 // embryonic skeletal system development // not recorded /// 0048706 // embryonic skeletal system development // inferred from electronic annotation /// 0060435 // bronchiole development // inferred from electronic annotation /// 0060435 // bronchiole development // not recorded /// 0060439 // trachea morphogenesis // not recorded /// 0060439 // trachea morphogenesis // inferred from electronic annotation /// 0060441 // epithelial tube branching involved in lung morphogenesis // inferred from electronic annotation /// 0060441 // epithelial tube branching involved in lung morphogenesis // not recorded /// 0060480 // lung goblet cell differentiation // inferred from electronic annotation /// 0060480 // lung goblet cell differentiation // not recorded /// 0060481 // lobar bronchus epithelium development // not recorded /// 0060481 // lobar bronchus epithelium development // inferred from electronic annotation /// 0060484 // lung-associated mesenchyme development // inferred from electronic annotation /// 0060484 // lung-associated mesenchyme development // not recorded /// 0060535 // trachea cartilage morphogenesis // inferred from electronic annotation /// 0060535 // trachea cartilage morphogenesis // not recorded /// 0060536 // cartilage morphogenesis // not recorded /// 0060536 // cartilage morphogenesis // inferred from electronic annotation /// 0060574 // intestinal epithelial cell maturation // inferred from electronic annotation /// 0060574 // intestinal epithelial cell maturation // not recorded /// 0060638 // mesenchymal-epithelial cell signaling // inferred from electronic annotation /// 0060638 // mesenchymal-epithelial cell signaling // not recorded /// 0060644 // mammary gland epithelial cell differentiation // inferred from electronic annotation /// 0060644 // mammary gland epithelial cell differentiation // not recorded /// 0060749 // mammary gland alveolus development // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // not recorded /// 0060764 // cell-cell signaling involved in mammary gland development // inferred from electronic annotation /// 0060764 // cell-cell signaling involved in mammary gland development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1370970_at AI717104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717104 /DB_XREF=gi:5034360 /DB_XREF=UI-R-Y0-abe-a-08-0-UI.s1 /CLONE=UI-R-Y0-abe-a-08-0-UI /FEA=mRNA /CNT=6 /TID=Rn.14528.1 /TIER=ConsEnd /STK=4 /UG=Rn.14528 /UG_TITLE=Rattus norvegicus mRNA for Kir2.4, inwardly rectifying potassium channel AI717104 potassium inwardly-rectifying channel, subfamily J, member 14 Kcnj14 276720 NM_170718 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from direct assay /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation 1370971_at BI277545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277545 /DB_XREF=gi:14923522 /DB_XREF=UI-R-CY0-bxs-e-02-0-UI.s1 /CLONE=UI-R-CY0-bxs-e-02-0-UI /FEA=mRNA /CNT=6 /TID=Rn.40497.1 /TIER=ConsEnd /STK=4 /UG=Rn.40497 /UG_TITLE=Rattus norvegicus type 2X myosin heavy chain (MYHC) mRNA, partial cds BI277545 myosin, heavy polypeptide 1, skeletal muscle, adult /// myosin, heavy chain 2, skeletal muscle, adult Myh1 /// Myh2 287408 /// 691644 NM_001135157 /// NM_001135158 0001778 // plasma membrane repair // not recorded /// 0006936 // muscle contraction // inferred from direct assay /// 0006936 // muscle contraction // not recorded /// 0006936 // muscle contraction // inferred from electronic annotation /// 0006941 // striated muscle contraction // traceable author statement /// 0014823 // response to activity // not recorded /// 0031034 // myosin filament assembly // traceable author statement 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005826 // actomyosin contractile ring // not recorded /// 0005859 // muscle myosin complex // inferred from direct assay /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0016459 // myosin complex // inferred from electronic annotation /// 0030016 // myofibril // not recorded /// 0030016 // myofibril // inferred from electronic annotation /// 0031672 // A band // not recorded /// 0032982 // myosin filament // inferred from electronic annotation /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from electronic annotation 0000146 // microfilament motor activity // traceable author statement /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // traceable author statement 1370972_x_at BI300597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300597 /DB_XREF=gi:14976877 /DB_XREF=UI-R-CV2-cim-h-08-0-UI.s1 /CLONE=UI-R-CV2-cim-h-08-0-UI /FEA=mRNA /CNT=5 /TID=Rn.82697.1 /TIER=ConsEnd /STK=4 /UG=Rn.82697 /LL=25005 /UG_GENE=RTS /UG_TITLE=RT1 class I gene BI300597 RT1 class I, locus CE5 RT1-CE5 309607 NM_001008843 /// NM_001033986 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 1370973_at BF285019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285019 /DB_XREF=gi:11216089 /DB_XREF=EST449610 /CLONE=RGIEY67 /FEA=mRNA /CNT=28 /TID=Rn.54541.1 /TIER=ConsEnd /STK=3 /UG=Rn.54541 /LL=64155 /UG_GENE=Scn6a /UG_TITLE=sodium channel, voltage-gated, type VI, alpha polypeptide BF285019 sodium channel, voltage-gated, type VII, alpha Scn7a 64155 NM_031686 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation 0001518 // voltage-gated sodium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005248 // voltage-gated sodium channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // traceable author statement /// 0005272 // sodium channel activity // inferred from electronic annotation 1370974_at AJ010392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ010392.3 /DB_XREF=gi:14475526 /GEN=Vps54l /FEA=mRNA /CNT=18 /TID=Rn.15950.1 /TIER=ConsEnd /STK=3 /UG=Rn.15950 /DEF=Rattus norvegicus mRNA for Vps54-like protein. /PROD=Vps54l-like protein AJ010392 vacuolar protein sorting 54 homolog (S. cerevisiae) Vps54 286932 NM_173147 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0040007 // growth // inferred from electronic annotation /// 0040007 // growth // not recorded /// 0042147 // retrograde transport, endosome to Golgi // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // not recorded /// 0050881 // musculoskeletal movement // inferred from electronic annotation /// 0050881 // musculoskeletal movement // not recorded /// 0060052 // neurofilament cytoskeleton organization // inferred from electronic annotation /// 0060052 // neurofilament cytoskeleton organization // not recorded 0005515 // protein binding // inferred from electronic annotation 1370975_at AI172079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172079 /DB_XREF=gi:3712119 /DB_XREF=EST218074 /CLONE=RMUBU65 /FEA=mRNA /CNT=13 /TID=Rn.10541.1 /TIER=ConsEnd /STK=3 /UG=Rn.10541 /UG_TITLE=R.norvegicus mRNA for putative zinc finger protein AI172079 lysine (K)-specific demethylase 3A Kdm3a 312440 NM_175764 0006350 // transcription // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // not recorded /// 0033169 // histone H3-K9 demethylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0046293 // formaldehyde biosynthetic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0005506 // iron ion binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // not recorded 1370976_at BE118966 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118966 /DB_XREF=gi:8511071 /DB_XREF=UI-R-BS1-azw-h-05-0-UI.s1 /CLONE=UI-R-BS1-azw-h-05-0-UI /FEA=mRNA /CNT=13 /TID=Rn.22872.1 /TIER=ConsEnd /STK=3 /UG=Rn.22872 /LL=171092 /UG_GENE=G3bp /UG_TITLE=Ras-GTPase-activating protein SH3-domain binding protein BE118966 GTPase activating protein (SH3 domain) binding protein 1 G3bp1 171092 NM_133565 0006810 // transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1370977_at X66022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X66022.1 /DB_XREF=gi:56742 /FEA=mRNA /CNT=12 /TID=Rn.42906.1 /TIER=ConsEnd /STK=3 /UG=Rn.42906 /LL=50545 /UG_GENE=Neud4 /UG_TITLE=neuro-d4 /DEF=R.norvegicus mRNA for neuro-D4 protein. X66022 D4, zinc and double PHD fingers family 1 Dpf1 50545 NM_001105729 0006350 // transcription // inferred from electronic annotation /// 0007399 // nervous system development // inferred from direct assay /// 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from sequence or structural similarity /// 0007399 // nervous system development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0071565 // nBAF complex // not recorded /// 0071565 // nBAF complex // inferred from sequence or structural similarity 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370978_at BM387205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387205 /DB_XREF=gi:18187258 /DB_XREF=UI-R-CN1-cjh-a-05-0-UI.s1 /CLONE=UI-R-CN1-cjh-a-05-0-UI /FEA=mRNA /CNT=9 /TID=Rn.20374.1 /TIER=ConsEnd /STK=3 /UG=Rn.20374 /LL=29521 /UG_GENE=Scamp1 /UG_TITLE=secretory carrier membrane protein 1 BM387205 secretory carrier membrane protein 1 Scamp1 29521 NM_001100636 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0006887 // exocytosis // not recorded /// 0006897 // endocytosis // inferred from direct assay /// 0015031 // protein transport // not recorded /// 0015031 // protein transport // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005802 // trans-Golgi network // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // not recorded /// 0042589 // zymogen granule membrane // inferred from electronic annotation /// 0042589 // zymogen granule membrane // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0055038 // recycling endosome membrane // not recorded /// 0055038 // recycling endosome membrane // inferred from sequence or structural similarity /// 0055038 // recycling endosome membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from direct assay 1370979_at BF282783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282783 /DB_XREF=gi:11213853 /DB_XREF=EST447374 /CLONE=RGIDT04 /FEA=mRNA /CNT=7 /TID=Rn.16096.1 /TIER=ConsEnd /STK=3 /UG=Rn.16096 /LL=84473 /UG_GENE=Ddx20 /UG_TITLE=DEADH (Asp-Glu-Ala-AspHis) box polypeptide 20, 103kD BF282783 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 Ddx20 84473 NM_001191711 /// XM_001066705 /// XM_227558 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000387 // spliceosomal snRNP assembly // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0016481 // negative regulation of transcription // inferred from direct assay /// 0016481 // negative regulation of transcription // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0017053 // transcriptional repressor complex // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from direct assay /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0019904 // protein domain specific binding // not recorded 1370980_at X14778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X14778.1 /DB_XREF=gi:57284 /FEA=mRNA /CNT=6 /TID=Rn.1952.1 /TIER=ConsEnd /STK=3 /UG=Rn.1952 /DEF=Rat mRNA for pulmonary surfactant-associated protein SP-B. /PROD=pulmonary surfactant-associated protein SP-B,precursor X14778 surfactant protein B Sftpb 192155 NM_138842 0001666 // response to hypoxia // inferred from expression pattern /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033189 // response to vitamin A // inferred from expression pattern /// 0050828 // regulation of liquid surface tension // traceable author statement /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0055093 // response to hyperoxia // inferred from expression pattern /// 0070741 // response to interleukin-6 // inferred from expression pattern /// 0070848 // response to growth factor stimulus // inferred from expression pattern /// 0070849 // response to epidermal growth factor stimulus // inferred from expression pattern /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern /// 0071732 // cellular response to nitric oxide // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005771 // multivesicular body // inferred from direct assay /// 0042599 // lamellar body // inferred from direct assay 1370981_at BE118450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118450 /DB_XREF=gi:8510555 /DB_XREF=UI-R-BJ1-azp-g-04-0-UI.s1 /CLONE=UI-R-BJ1-azp-g-04-0-UI /FEA=mRNA /CNT=6 /TID=Rn.8808.1 /TIER=ConsEnd /STK=3 /UG=Rn.8808 /LL=83574 /UG_GENE=Rxrg /UG_TITLE=retinoid X receptor gamma ( BE118450 retinoid X receptor gamma Rxrg 83574 NM_031765 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007422 // peripheral nervous system development // inferred from expression pattern /// 0007507 // heart development // inferred from expression pattern /// 0007519 // skeletal muscle tissue development // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030182 // neuron differentiation // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048384 // retinoic acid receptor signaling pathway // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0004886 // retinoid-X receptor activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370982_at BI275633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275633 /DB_XREF=gi:14919736 /DB_XREF=UI-R-CW0-bwk-g-12-0-UI.s1 /CLONE=UI-R-CW0-bwk-g-12-0-UI /FEA=mRNA /CNT=5 /TID=Rn.11238.1 /TIER=ConsEnd /STK=3 /UG=Rn.11238 /UG_TITLE=Rat mRNA 3-fragment for glycogen phosphorylase (aa 760-840) BI275633 phosphorylase, glycogen, muscle Pygm 24701 NM_012638 0001666 // response to hypoxia // inferred from direct assay /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from direct assay /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005980 // glycogen catabolic process // inferred from direct assay /// 0005980 // glycogen catabolic process // not recorded /// 0005980 // glycogen catabolic process // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from direct assay /// 0010033 // response to organic substance // inferred from direct assay /// 0051591 // response to cAMP // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0016529 // sarcoplasmic reticulum // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004645 // phosphorylase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from direct assay /// 0008144 // drug binding // inferred from direct assay /// 0008184 // glycogen phosphorylase activity // inferred from direct assay /// 0008184 // glycogen phosphorylase activity // not recorded /// 0008184 // glycogen phosphorylase activity // traceable author statement /// 0008184 // glycogen phosphorylase activity // inferred from electronic annotation /// 0016208 // AMP binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from direct assay /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred by curator 1370983_at AW523687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523687 /DB_XREF=gi:7166072 /DB_XREF=UI-R-BO0-aih-a-06-0-UI.s1 /CLONE=UI-R-BO0-aih-a-06-0-UI /FEA=mRNA /CNT=5 /TID=Rn.44845.1 /TIER=ConsEnd /STK=3 /UG=Rn.44845 /LL=116545 /UG_GENE=Pou6f1 /UG_TITLE=POU domain, class 6, transcription factor 1 AW523687 POU class 6 homeobox 1 Pou6f1 116545 NM_001105746 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1370984_at AF151710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF151710.1 /DB_XREF=gi:4973440 /FEA=mRNA /CNT=4 /TID=Rn.74243.1 /TIER=ConsEnd /STK=3 /UG=Rn.74243 /UG_TITLE=Rattus norvegicus zinc finger protein (pMLZ-4) mRNA, 3 untranslated region /DEF=Rattus norvegicus zinc finger protein (pMLZ-4) mRNA, 3 untranslated region. AF151710 zinc finger protein 46 Zfp46 298558 NM_001106691 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1370985_at AJ005424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ005424.1 /DB_XREF=gi:3426115 /GEN=BMK1ERK5 /FEA=mRNA /CNT=4 /TID=Rn.20765.1 /TIER=ConsEnd /STK=3 /UG=Rn.20765 /LL=114509 /UG_TITLE=mitogen-activated protein kinase 7 /DEF=Rattus norvegicus mRNA for BMK1ERK5 protein, partial. AJ005424 mitogen-activated protein kinase 7 Mapk7 114509 NM_001191547 /// XM_002724501 /// XM_002727717 0000165 // MAPKKK cascade // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045765 // regulation of angiogenesis // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0070375 // BMK cascade // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004707 // MAP kinase activity // inferred from direct assay /// 0004707 // MAP kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1370986_s_at AW535280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535280 /DB_XREF=gi:7177694 /DB_XREF=UI-R-C4-alv-c-10-0-UI.s1 /CLONE=UI-R-C4-alv-c-10-0-UI /FEA=mRNA /CNT=10 /TID=Rn.54043.1 /TIER=ConsEnd /STK=2 /UG=Rn.54043 /UG_TITLE=Rat VL30 element mRNA AW535280 1370987_at BF550890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550890 /DB_XREF=gi:11660620 /DB_XREF=UI-R-C1-jz-c-05-0-UI.r1 /CLONE=UI-R-C1-jz-c-05-0-UI /FEA=mRNA /CNT=9 /TID=Rn.11144.1 /TIER=ConsEnd /STK=2 /UG=Rn.11144 /LL=24796 /UG_GENE=Spn /UG_TITLE=Sialophorin (gpL115, leukosianin, CD43) BF550890 sialophorin Spn 24796 XM_001080140 /// XM_344964 0001562 // response to protozoan // not recorded /// 0001808 // negative regulation of type IV hypersensitivity // not recorded /// 0002544 // chronic inflammatory response // inferred from expression pattern /// 0007162 // negative regulation of cell adhesion // not recorded /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0031295 // T cell costimulation // not recorded /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0042117 // monocyte activation // inferred from expression pattern /// 0042130 // negative regulation of T cell proliferation // not recorded /// 0042535 // positive regulation of tumor necrosis factor biosynthetic process // not recorded /// 0042742 // defense response to bacterium // not recorded /// 0045060 // negative thymic T cell selection // not recorded /// 0050688 // regulation of defense response to virus // not recorded /// 0050776 // regulation of immune response // not recorded /// 0050868 // negative regulation of T cell activation // not recorded /// 0071594 // thymocyte aggregation // inferred from mutant phenotype 0001931 // uropod // not recorded /// 0005604 // basement membrane // not recorded /// 0005615 // extracellular space // not recorded /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // not recorded /// 0005902 // microvillus // inferred from direct assay /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from direct assay 0005515 // protein binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0051635 // bacterial cell surface binding // not recorded 1370988_at BE349751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE349751 /DB_XREF=gi:9261604 /DB_XREF=hq42e07.x1 /CLONE=IMAGE:3122052 /FEA=mRNA /CNT=11 /TID=Rn.65184.1 /TIER=ConsEnd /STK=2 /UG=Rn.65184 /UG_TITLE=Rat VL30 element mRNA BE349751 1370989_at AI639318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639318 /DB_XREF=gi:4700352 /DB_XREF=rx04977s /CLONE=rx04977 /FEA=mRNA /CNT=10 /TID=Rn.44178.1 /TIER=ConsEnd /STK=2 /UG=Rn.44178 /LL=24716 /UG_GENE=Ret /UG_TITLE=Ret proto-oncogene (multiple endocrine neoplasia MEN2A, MEN2B and medullary thyroid carcinoma 1, Hirschsprung disease) AI639318 ret proto-oncogene Ret 24716 NM_001110099 /// NM_012643 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000165 // MAPKKK cascade // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0001838 // embryonic epithelial tube formation // inferred from electronic annotation /// 0001838 // embryonic epithelial tube formation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0014042 // positive regulation of neuron maturation // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0042551 // neuron maturation // not recorded /// 0042551 // neuron maturation // inferred from electronic annotation /// 0048484 // enteric nervous system development // inferred from electronic annotation /// 0048484 // enteric nervous system development // not recorded /// 0060041 // retina development in camera-type eye // inferred from expression pattern /// 0060384 // innervation // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1370990_at AI178339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178339 /DB_XREF=gi:3728977 /DB_XREF=EST222007 /CLONE=RPLCP29 /FEA=mRNA /CNT=7 /TID=Rn.24178.1 /TIER=ConsEnd /STK=2 /UG=Rn.24178 /LL=54395 /UG_GENE=Cytor4 /UG_TITLE=similar to cytokine receptor related protein 4 AI178339 cytokine receptor-like factor 3 Crlf3 54395 NM_001168612 1370991_at AF187814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF187814.1 /DB_XREF=gi:6651447 /GEN=Cml3 /FEA=mRNA /CNT=7 /TID=Rn.43582.1 /TIER=ConsEnd /STK=2 /UG=Rn.43582 /LL=113892 /DEF=Rattus norvegicus putative N-acetyltransferase CML3 (Cml3) mRNA, partial cds. /PROD=putative N-acetyltransferase CML3 AF187814 camello-like 3 Cml3 113892 XM_001074100 /// XM_575585 0001702 // gastrulation with mouth forming second // non-traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007369 // gastrulation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0008080 // N-acetyltransferase activity // non-traceable author statement /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1370992_a_at AI072045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072045 /DB_XREF=gi:3398239 /DB_XREF=UI-R-C2-nd-g-11-0-UI.s1 /CLONE=UI-R-C2-nd-g-11-0-UI /FEA=mRNA /CNT=5 /TID=Rn.5500.1 /TIER=ConsEnd /STK=2 /UG=Rn.5500 /LL=24365 /UG_GENE=Fga /UG_TITLE=Fibrinogen, A alpha polypeptide AI072045 fibrinogen alpha chain Fga 361969 NM_001008724 /// NM_052797 0007165 // signal transduction // inferred from electronic annotation /// 0007596 // blood coagulation // not recorded /// 0007596 // blood coagulation // traceable author statement /// 0007596 // blood coagulation // inferred from electronic annotation /// 0030168 // platelet activation // inferred from electronic annotation /// 0042246 // tissue regeneration // inferred from expression pattern /// 0051258 // protein polymerization // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005577 // fibrinogen complex // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005938 // cell cortex // not recorded /// 0009897 // external side of plasma membrane // not recorded /// 0031091 // platelet alpha granule // not recorded /// 0031093 // platelet alpha granule lumen // not recorded 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030674 // protein binding, bridging // inferred from electronic annotation /// 0043499 // eukaryotic cell surface binding // not recorded 1370993_at AA997129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997129 /DB_XREF=gi:4281721 /DB_XREF=UI-R-C0-hq-b-04-0-UI.s1 /CLONE=UI-R-C0-hq-b-04-0-UI /FEA=mRNA /CNT=10 /TID=Rn.7145.1 /TIER=ConsEnd /STK=2 /UG=Rn.7145 /LL=117036 /UG_GENE=Lamc1 /UG_TITLE=laminin, gamma 1 AA997129 laminin, gamma 1 Lamc1 117036 NM_053966 0006461 // protein complex assembly // inferred from electronic annotation /// 0006461 // protein complex assembly // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0022617 // extracellular matrix disassembly // inferred from electronic annotation /// 0022617 // extracellular matrix disassembly // not recorded /// 0031175 // neuron projection development // inferred from electronic annotation /// 0031175 // neuron projection development // not recorded /// 0031581 // hemidesmosome assembly // inferred from electronic annotation /// 0031581 // hemidesmosome assembly // not recorded /// 0034446 // substrate adhesion-dependent cell spreading // inferred from electronic annotation /// 0034446 // substrate adhesion-dependent cell spreading // not recorded 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from direct assay /// 0005604 // basement membrane // not recorded /// 0005604 // basement membrane // inferred from electronic annotation /// 0005605 // basal lamina // inferred from electronic annotation /// 0005605 // basal lamina // not recorded /// 0005606 // laminin-1 complex // inferred from direct assay /// 0031012 // extracellular matrix // not recorded /// 0043259 // laminin-10 complex // inferred from electronic annotation /// 0043259 // laminin-10 complex // not recorded 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043208 // glycosphingolipid binding // inferred from electronic annotation /// 0043208 // glycosphingolipid binding // not recorded 1370994_at BG381386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381386 /DB_XREF=gi:13305858 /DB_XREF=UI-R-CS0-btt-f-07-0-UI.s1 /CLONE=UI-R-CS0-btt-f-07-0-UI /FEA=mRNA /CNT=5 /TID=Rn.40639.1 /TIER=ConsEnd /STK=2 /UG=Rn.40639 /LL=81917 /UG_GENE=Hip1r /UG_TITLE=huntingtin interacting protein 1 related BG381386 huntingtin interacting protein 1 related Hip1r 81917 NM_001134763 /// NM_031234 0006898 // receptor-mediated endocytosis // not recorded /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005856 // cytoskeleton // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005905 // coated pit // not recorded /// 0005905 // coated pit // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // not recorded /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1370995_at AW528459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528459 /DB_XREF=gi:7170873 /DB_XREF=UI-R-BO1-ajl-f-04-0-UI.s1 /CLONE=UI-R-BO1-ajl-f-04-0-UI /FEA=mRNA /CNT=5 /TID=Rn.9992.1 /TIER=ConsEnd /STK=2 /UG=Rn.9992 /UG_TITLE=Rattus norvegicus transcription factor Oct1 (Oct1) mRNA, partial cds AW528459 POU domain, class 2, transcription factor 1 Pou2f1 171068 NM_001100639 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0030910 // olfactory placode formation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060235 // lens induction in camera-type eye // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0030528 // transcription regulator activity // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1370996_at AI577569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577569 /DB_XREF=gi:4561945 /DB_XREF=UI-R-Y0-vk-d-08-0-UI.s1 /CLONE=UI-R-Y0-vk-d-08-0-UI /FEA=mRNA /CNT=4 /TID=Rn.31767.1 /TIER=ConsEnd /STK=2 /UG=Rn.31767 /UG_TITLE=Rattus norvegicus strain Wistar RAS guanine nucleotide-releasing factor 1 (Rasgrf1) mRNA, partial cds AI577569 RAS protein-specific guanine nucleotide-releasing factor 1 Rasgrf1 192213 NM_001105753 /// NM_001170531 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from sequence or structural similarity /// 0031175 // neuron projection development // inferred from electronic annotation /// 0032320 // positive regulation of Ras GTPase activity // inferred from sequence or structural similarity /// 0032320 // positive regulation of Ras GTPase activity // inferred from electronic annotation /// 0032863 // activation of Rac GTPase activity // inferred from sequence or structural similarity /// 0032863 // activation of Rac GTPase activity // inferred from electronic annotation /// 0035020 // regulation of Rac protein signal transduction // inferred from sequence or structural similarity /// 0035020 // regulation of Rac protein signal transduction // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0046578 // regulation of Ras protein signal transduction // inferred from sequence or structural similarity /// 0046578 // regulation of Ras protein signal transduction // inferred from electronic annotation /// 0048168 // regulation of neuronal synaptic plasticity // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0030426 // growth cone // inferred from sequence or structural similarity /// 0030426 // growth cone // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005099 // Ras GTPase activator activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0035254 // glutamate receptor binding // inferred from electronic annotation 1370997_at AF030088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF030088.2 /DB_XREF=gi:5670322 /FEA=mRNA /CNT=5 /TID=Rn.37500.6 /TIER=ConsEnd /STK=2 /UG=Rn.37500 /LL=65137 /UG_GENE=Ruvbl1 /UG_TITLE=RuvB-like protein 1 /DEF=Rattus norvegicus activity and neurotransmitter-induced early gene 3 (ania-3) mRNA, 3UTR. AF030088 homer homolog 1 (Drosophila) Homer1 29546 NM_031707 0003009 // skeletal muscle contraction // not recorded /// 0006950 // response to stress // inferred from expression pattern /// 0007216 // metabotropic glutamate receptor signaling pathway // inferred from direct assay /// 0007623 // circadian rhythm // inferred from expression pattern /// 0032236 // positive regulation of calcium ion transport via store-operated calcium channel activity // not recorded /// 0035094 // response to nicotine // inferred from expression pattern /// 0042220 // response to cocaine // inferred from expression pattern /// 0048741 // skeletal muscle fiber development // not recorded 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030018 // Z disc // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043034 // costamere // not recorded /// 0043198 // dendritic shaft // inferred from direct assay /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0060076 // excitatory synapse // inferred from direct assay 0005102 // receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0031802 // type 5 metabotropic glutamate receptor binding // inferred from physical interaction /// 0035256 // metabotropic glutamate receptor binding // inferred from physical interaction 1370998_at M92075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M92075.1 /DB_XREF=gi:205402 /FEA=mRNA /CNT=4 /TID=Rn.9681.1 /TIER=ConsEnd /STK=2 /UG=Rn.9681 /LL=24415 /UG_GENE=Grm2 /UG_TITLE=Glutamate receptor, metabotropic 2 /DEF=Rat metabotropic glutamate receptor 2 mRNA, primary transcript. M92075 glutamate receptor, metabotropic 2 Grm2 24415 NM_001105711 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007196 // inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway // not recorded /// 0007268 // synaptic transmission // not recorded /// 0007269 // neurotransmitter secretion // not recorded /// 0008344 // adult locomotory behavior // not recorded /// 0014047 // glutamate secretion // inferred from direct assay /// 0035249 // synaptic transmission, glutamatergic // not recorded /// 0046928 // regulation of neurotransmitter secretion // non-traceable author statement /// 0048148 // behavioral response to cocaine // not recorded /// 0051966 // regulation of synaptic transmission, glutamatergic // non-traceable author statement 0005622 // intracellular // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from direct assay 0001641 // group II metabotropic glutamate receptor activity // inferred from mutant phenotype /// 0001641 // group II metabotropic glutamate receptor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005246 // calcium channel regulator activity // not recorded 1370999_at AF111111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF111111.1 /DB_XREF=gi:6650615 /FEA=mRNA /CNT=4 /TID=Rn.46014.1 /TIER=ConsEnd /STK=2 /UG=Rn.46014 /DEF=Rattus norvegicus sperm tail protein Spag5 mRNA, partial cds. /PROD=sperm tail protein Spag5 AF111111 sperm associated antigen 5 Spag5 252918 NM_001044224 0005876 // spindle microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded 0005515 // protein binding // not recorded 1371000_at AI454679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454679 /DB_XREF=gi:4295411 /DB_XREF=UI-R-BT0-qk-c-05-0-UI.s1 /CLONE=UI-R-BT0-qk-c-05-0-UI /FEA=mRNA /CNT=3 /TID=Rn.10738.1 /TIER=ConsEnd /STK=2 /UG=Rn.10738 /LL=116652 /UG_GENE=Cacna1s /UG_TITLE=calcium channel, voltage-dependent, L type, alpha 1S subunit AI454679 calcium channel, voltage-dependent, L type, alpha 1S subunit Cacna1s 682930 NM_053873 0001503 // ossification // non-traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005891 // voltage-gated calcium channel complex // inferred from direct assay /// 0005891 // voltage-gated calcium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from direct assay /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation 1371001_at AI237038 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237038 /DB_XREF=gi:3830544 /DB_XREF=EST233600 /CLONE=ROVDN88 /FEA=mRNA /CNT=3 /TID=Rn.65877.1 /TIER=ConsEnd /STK=2 /UG=Rn.65877 /UG_TITLE=R.norvegicus H1SHR mRNA AI237038 1371002_at AI704628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI704628 /DB_XREF=gi:4992528 /DB_XREF=UI-R-AB1-yw-d-02-0-UI.s1 /CLONE=UI-R-AB1-yw-d-02-0-UI /FEA=mRNA /CNT=25 /TID=Rn.6959.1 /TIER=ConsEnd /STK=1 /UG=Rn.6959 /LL=58934 /UG_GENE=Pdcd2 /UG_TITLE=programmed cell death 2 AI704628 programmed cell death 2 Pdcd2 58934 NM_031638 0006915 // apoptosis // inferred from electronic annotation /// 0012501 // programmed cell death // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371003_at BG378086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378086 /DB_XREF=gi:13302558 /DB_XREF=UI-R-CT0-bvn-g-03-0-UI.s1 /CLONE=UI-R-CT0-bvn-g-03-0-UI /FEA=mRNA /CNT=29 /TID=Rn.19032.1 /TIER=ConsEnd /STK=1 /UG=Rn.19032 /LL=29456 /UG_GENE=Map1b /UG_TITLE=microtubule-associated protein 5 BG378086 microtubule-associated protein 1B Map1b 29456 NM_019217 0001578 // microtubule bundle formation // inferred from direct assay /// 0001578 // microtubule bundle formation // not recorded /// 0001578 // microtubule bundle formation // inferred from electronic annotation /// 0007026 // negative regulation of microtubule depolymerization // inferred from direct assay /// 0007399 // nervous system development // inferred from expression pattern /// 0007416 // synapse assembly // inferred from expression pattern /// 0007417 // central nervous system development // inferred from expression pattern /// 0009611 // response to wounding // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009743 // response to carbohydrate stimulus // inferred from expression pattern /// 0009790 // embryo development // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0014012 // peripheral nervous system axon regeneration // inferred from expression pattern /// 0016358 // dendrite development // inferred from electronic annotation /// 0016358 // dendrite development // not recorded /// 0017085 // response to insecticide // inferred from expression pattern /// 0021700 // developmental maturation // inferred from expression pattern /// 0031116 // positive regulation of microtubule polymerization // inferred from direct assay /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0033189 // response to vitamin A // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0045773 // positive regulation of axon extension // inferred from mutant phenotype /// 0048666 // neuron development // inferred from expression pattern /// 0048678 // response to axon injury // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0051915 // induction of synaptic plasticity by chemical substance // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003779 // actin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from mutant phenotype /// 0032403 // protein complex binding // inferred from direct assay 1371004_at AI070124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070124 /DB_XREF=gi:3396375 /DB_XREF=UI-R-Y0-lu-d-08-0-UI.s1 /CLONE=UI-R-Y0-lu-d-08-0-UI /FEA=mRNA /CNT=13 /TID=Rn.11286.1 /TIER=ConsEnd /STK=1 /UG=Rn.11286 /LL=83576 /UG_GENE=Sort1 /UG_TITLE=sortilin 1 AI070124 sortilin 1 Sort1 83576 NM_031767 0001503 // ossification // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // non-traceable author statement /// 0006895 // Golgi to endosome transport // not recorded /// 0006897 // endocytosis // inferred from electronic annotation /// 0006897 // endocytosis // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008333 // endosome to lysosome transport // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0014902 // myotube differentiation // not recorded /// 0016050 // vesicle organization // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0032509 // endosome transport via multivesicular body sorting pathway // not recorded /// 0032868 // response to insulin stimulus // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0046323 // glucose import // not recorded /// 0048011 // nerve growth factor receptor signaling pathway // not recorded /// 0048227 // plasma membrane to endosome transport // not recorded /// 0051005 // negative regulation of lipoprotein lipase activity // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // not recorded /// 0009986 // cell surface // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0030136 // clathrin-coated vesicle // not recorded /// 0030140 // trans-Golgi network transport vesicle // not recorded /// 0030425 // dendrite // inferred from direct assay /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0010465 // nerve growth factor receptor activity // not recorded /// 0016492 // neurotensin receptor activity, G-protein coupled // traceable author statement /// 0019899 // enzyme binding // not recorded /// 0030379 // neurotensin receptor activity, non-G-protein coupled // not recorded /// 0048406 // nerve growth factor binding // not recorded 1371005_at AI059506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059506 /DB_XREF=gi:3333283 /DB_XREF=UI-R-C1-kw-a-04-0-UI.s1 /CLONE=UI-R-C1-kw-a-04-0-UI /FEA=mRNA /CNT=12 /TID=Rn.10495.1 /TIER=ConsEnd /STK=1 /UG=Rn.10495 /LL=24565 /UG_GENE=Abcc1 /UG_TITLE=ATP-binding cassette, sub-family C (CFTRMRP), member 1 (multiple drug resistance-associated protein) AI059506 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 Abcc1 24565 NM_022281 0006810 // transport // inferred from electronic annotation /// 0006855 // drug transmembrane transport // inferred from direct assay /// 0006855 // drug transmembrane transport // inferred from mutant phenotype /// 0006979 // response to oxidative stress // inferred from mutant phenotype /// 0015911 // plasma membrane long-chain fatty acid transport // inferred from direct assay /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0033700 // phospholipid efflux // inferred from mutant phenotype /// 0034775 // glutathione transmembrane transport // inferred from mutant phenotype /// 0042493 // response to drug // inferred from direct assay /// 0042908 // xenobiotic transport // inferred from mutant phenotype /// 0043215 // daunorubicin transport // inferred by curator /// 0043215 // daunorubicin transport // inferred from mutant phenotype /// 0043526 // neuroprotection // inferred from mutant phenotype /// 0046618 // drug export // inferred from direct assay /// 0046618 // drug export // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060326 // cell chemotaxis // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005324 // long-chain fatty acid transporter activity // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008559 // xenobiotic-transporting ATPase activity // inferred from direct assay /// 0008559 // xenobiotic-transporting ATPase activity // inferred from mutant phenotype /// 0015238 // drug transmembrane transporter activity // inferred from direct assay /// 0015238 // drug transmembrane transporter activity // inferred from mutant phenotype /// 0015431 // glutathione S-conjugate-exporting ATPase activity // inferred from mutant phenotype /// 0015562 // efflux transmembrane transporter activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0034040 // lipid-transporting ATPase activity // inferred from direct assay /// 0034634 // glutathione transmembrane transporter activity // inferred from mutant phenotype /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // not recorded /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation /// 0046624 // sphingolipid transporter activity // inferred from mutant phenotype 1371006_at BI274746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274746 /DB_XREF=gi:14885960 /DB_XREF=UI-R-CX0-bxd-e-06-0-UI.s1 /CLONE=UI-R-CX0-bxd-e-06-0-UI /FEA=mRNA /CNT=10 /TID=Rn.22459.1 /TIER=ConsEnd /STK=1 /UG=Rn.22459 /LL=29147 /UG_GENE=Jag2 /UG_TITLE=jagged 2 BI274746 jagged 2 Jag2 29147 XM_001073124 /// XM_002729728 /// XM_343119 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001709 // cell fate determination // non-traceable author statement /// 0003016 // respiratory system process // inferred from electronic annotation /// 0003016 // respiratory system process // not recorded /// 0007154 // cell communication // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007219 // Notch signaling pathway // non-traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0007283 // spermatogenesis // inferred from mutant phenotype /// 0007283 // spermatogenesis // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0008584 // male gonad development // inferred from expression pattern /// 0009912 // auditory receptor cell fate commitment // not recorded /// 0009912 // auditory receptor cell fate commitment // inferred from sequence or structural similarity /// 0016331 // morphogenesis of embryonic epithelium // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // not recorded /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // non-traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0030155 // regulation of cell adhesion // not recorded /// 0030217 // T cell differentiation // inferred from electronic annotation /// 0030217 // T cell differentiation // not recorded /// 0030217 // T cell differentiation // inferred from sequence or structural similarity /// 0030326 // embryonic limb morphogenesis // non-traceable author statement /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from sequence or structural similarity /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042492 // gamma-delta T cell differentiation // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0045061 // thymic T cell selection // inferred from electronic annotation /// 0045061 // thymic T cell selection // not recorded /// 0045061 // thymic T cell selection // inferred from sequence or structural similarity /// 0045595 // regulation of cell differentiation // traceable author statement 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005112 // Notch binding // not recorded /// 0005112 // Notch binding // non-traceable author statement /// 0005112 // Notch binding // traceable author statement /// 0005112 // Notch binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0008083 // growth factor activity // inferred from sequence or structural similarity 1371007_at BF416432 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416432 /DB_XREF=gi:11404421 /DB_XREF=UI-R-CA0-bks-e-08-0-UI.s1 /CLONE=UI-R-CA0-bks-e-08-0-UI /FEA=mRNA /CNT=7 /TID=Rn.24569.1 /TIER=ConsEnd /STK=1 /UG=Rn.24569 /LL=79208 /UG_GENE=Els1 /UG_TITLE=eck-like sequence 1 BF416432 EphA5 Epha5 79208 NM_001169137 /// NM_024367 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005003 // ephrin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1371008_at BE099971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099971 /DB_XREF=gi:8491855 /DB_XREF=UI-R-BJ1-atr-c-03-0-UI.s1 /CLONE=UI-R-BJ1-atr-c-03-0-UI /FEA=mRNA /CNT=7 /TID=Rn.11175.1 /TIER=ConsEnd /STK=1 /UG=Rn.11175 /UG_TITLE=Rat general mitochondrial matrix processing protease (MPP) mRNA, 3 end BE099971 peptidase (mitochondrial processing) alpha Pmpca 296588 NM_001003673 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // traceable author statement /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004175 // endopeptidase activity // inferred from direct assay /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371009_at U83139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U83139.1 /DB_XREF=gi:2315984 /GEN=MUC5AC /FEA=mRNA /CNT=6 /TID=Rn.10789.1 /TIER=ConsEnd /STK=1 /UG=Rn.10789 /LL=65188 /DEF=Rattus norvegicus mucin (MUC5AC) mRNA, partial cds. /PROD=mucin U83139 mucin 5AC, oligomeric mucus/gel-forming Muc5ac 682837 XM_001063331 0010193 // response to ozone // inferred from expression pattern /// 0010477 // response to sulfur dioxide // inferred from expression pattern /// 0030855 // epithelial cell differentiation // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033189 // response to vitamin A // inferred from expression pattern /// 0043206 // fibril organization // not recorded /// 0071300 // cellular response to retinoic acid // inferred from expression pattern /// 0071364 // cellular response to epidermal growth factor stimulus // inferred from expression pattern /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0043205 // fibril // not recorded /// 0044464 // cell part // not recorded 0005515 // protein binding // not recorded 1371010_at BF389361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389361 /DB_XREF=gi:11374191 /DB_XREF=UI-R-BS2-bdm-h-08-0-UI.s1 /CLONE=UI-R-BS2-bdm-h-08-0-UI /FEA=mRNA /CNT=5 /TID=Rn.34265.1 /TIER=ConsEnd /STK=1 /UG=Rn.34265 /LL=25628 /UG_GENE=Titf1 /UG_TITLE=Thyroid transcription factor 1 TTF-1 NK-2 (Drosophila) homolog A (thyroid nuclear factor) BF389361 NK2 homeobox 1 Nkx2-1 25628 NM_013093 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0002016 // regulation of blood volume by renin-angiotensin // inferred from direct assay /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // not recorded /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007492 // endoderm development // inferred from electronic annotation /// 0007492 // endoderm development // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0007631 // feeding behavior // inferred from mutant phenotype /// 0009725 // response to hormone stimulus // inferred from electronic annotation /// 0009725 // response to hormone stimulus // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0010719 // negative regulation of epithelial to mesenchymal transition // inferred from electronic annotation /// 0010719 // negative regulation of epithelial to mesenchymal transition // not recorded /// 0021537 // telencephalon development // not recorded /// 0021537 // telencephalon development // inferred from electronic annotation /// 0021759 // globus pallidus development // inferred from electronic annotation /// 0021759 // globus pallidus development // not recorded /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0021795 // cerebral cortex cell migration // inferred from electronic annotation /// 0021795 // cerebral cortex cell migration // not recorded /// 0021798 // forebrain dorsal/ventral pattern formation // inferred from electronic annotation /// 0021798 // forebrain dorsal/ventral pattern formation // not recorded /// 0021877 // forebrain neuron fate commitment // inferred from electronic annotation /// 0021877 // forebrain neuron fate commitment // not recorded /// 0021879 // forebrain neuron differentiation // not recorded /// 0021879 // forebrain neuron differentiation // inferred from electronic annotation /// 0021892 // cerebral cortex GABAergic interneuron differentiation // inferred from electronic annotation /// 0021892 // cerebral cortex GABAergic interneuron differentiation // not recorded /// 0021895 // cerebral cortex neuron differentiation // not recorded /// 0021895 // cerebral cortex neuron differentiation // inferred from electronic annotation /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0021983 // pituitary gland development // not recorded /// 0022029 // telencephalon cell migration // not recorded /// 0022029 // telencephalon cell migration // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0030878 // thyroid gland development // inferred from electronic annotation /// 0030878 // thyroid gland development // not recorded /// 0031128 // developmental induction // inferred from electronic annotation /// 0031128 // developmental induction // not recorded /// 0032496 // response to lipopolysaccharide // inferred from direct assay /// 0033327 // Leydig cell differentiation // inferred from electronic annotation /// 0033327 // Leydig cell differentiation // not recorded /// 0042538 // hyperosmotic salinity response // inferred from direct assay /// 0042696 // menarche // inferred from electronic annotation /// 0042696 // menarche // not recorded /// 0045449 // regulation of transcription // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from expression pattern /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046545 // development of primary female sexual characteristics // inferred from expression pattern /// 0048646 // anatomical structure formation involved in morphogenesis // inferred from electronic annotation /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded /// 0048663 // neuron fate commitment // not recorded /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048709 // oligodendrocyte differentiation // inferred from electronic annotation /// 0048709 // oligodendrocyte differentiation // not recorded /// 0060430 // lung saccule development // inferred from electronic annotation /// 0060430 // lung saccule development // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // inferred from electronic annotation /// 0060441 // epithelial tube branching involved in lung morphogenesis // not recorded /// 0060486 // Clara cell differentiation // inferred from electronic annotation /// 0060486 // Clara cell differentiation // not recorded /// 0060510 // Type II pneumocyte differentiation // inferred from electronic annotation /// 0060510 // Type II pneumocyte differentiation // not recorded 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from direct assay /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003704 // specific RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003704 // specific RNA polymerase II transcription factor activity // not recorded /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from direct assay /// 0030528 // transcription regulator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1371011_at AW920487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920487 /DB_XREF=gi:8086298 /DB_XREF=EST351791 /CLONE=RGIGX25 /FEA=mRNA /CNT=5 /TID=Rn.54531.1 /TIER=ConsEnd /STK=1 /UG=Rn.54531 /UG_TITLE=Rattus norvegicus tissue-type vomeronasal neurons putative pheromone receptor V2R2 mRNA, partial cds AW920487 vomeronasal 2 receptor 44 /// vomeronasal 2 receptor, 45 /// vomeronasal 2 receptor, 47 Vom2r44 /// Vom2r45 /// Vom2r47 266778 /// 295090 /// 365807 NM_001099498 /// NM_001099506 /// XM_001059752 /// XM_215580 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0016503 // pheromone receptor activity // non-traceable author statement 1371012_at AJ245707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ245707.1 /DB_XREF=gi:9663809 /FEA=mRNA /CNT=5 /TID=Rn.21425.1 /TIER=ConsEnd /STK=1 /UG=Rn.21425 /LL=85255 /UG_GENE=Hpcl2 /DEF=Rattus norvegicus partial mRNA for 2-hydroxyphytanoyl-CoA lyase. /PROD=2-hydroxyphytanoyl-CoA lyase AJ245707 2-hydroxyacyl-CoA lyase 1 Hacl1 85255 NM_053493 0001561 // fatty acid alpha-oxidation // inferred from direct assay /// 0001561 // fatty acid alpha-oxidation // not recorded /// 0001561 // fatty acid alpha-oxidation // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // not recorded 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // not recorded /// 0005777 // peroxisome // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016829 // lyase activity // not recorded /// 0016830 // carbon-carbon lyase activity // inferred from direct assay /// 0016830 // carbon-carbon lyase activity // not recorded /// 0016830 // carbon-carbon lyase activity // inferred from electronic annotation /// 0030976 // thiamin pyrophosphate binding // inferred from direct assay /// 0030976 // thiamin pyrophosphate binding // inferred from electronic annotation /// 0030976 // thiamin pyrophosphate binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1371013_at BG376217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376217 /DB_XREF=gi:13300689 /DB_XREF=UI-R-CT0-bun-h-03-0-UI.s1 /CLONE=UI-R-CT0-bun-h-03-0-UI /FEA=mRNA /CNT=6 /TID=Rn.29971.1 /TIER=ConsEnd /STK=1 /UG=Rn.29971 /LL=50592 /UG_GENE=Gria1 /UG_TITLE=glutamate receptor, ionotropic, AMPA1 (alpha 1) BG376217 glutamate receptor, ionotropic, AMPA 1 Gria1 50592 NM_031608 0001919 // regulation of receptor recycling // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007616 // long-term memory // inferred from mutant phenotype /// 0009636 // response to toxin // inferred from mutant phenotype /// 0010226 // response to lithium ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019228 // regulation of action potential in neuron // inferred from mutant phenotype /// 0021510 // spinal cord development // inferred from expression pattern /// 0031623 // receptor internalization // inferred from direct assay /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0035249 // synaptic transmission, glutamatergic // non-traceable author statement /// 0042220 // response to cocaine // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045838 // positive regulation of membrane potential // inferred from mutant phenotype /// 0046685 // response to arsenic // inferred from expression pattern /// 0048167 // regulation of synaptic plasticity // inferred from mutant phenotype /// 0048167 // regulation of synaptic plasticity // non-traceable author statement /// 0050804 // regulation of synaptic transmission // inferred from direct assay /// 0050806 // positive regulation of synaptic transmission // inferred from mutant phenotype /// 0051602 // response to electrical stimulus // inferred from expression pattern /// 0060992 // response to fungicide // inferred from expression pattern /// 0071230 // cellular response to amino acid stimulus // inferred from expression pattern /// 0071359 // cellular response to dsRNA // inferred from expression pattern /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern /// 0071375 // cellular response to peptide hormone stimulus // inferred from expression pattern /// 0071407 // cellular response to organic cyclic substance // inferred from expression pattern /// 0071418 // cellular response to amine stimulus // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern 0005624 // membrane fraction // not recorded /// 0005769 // early endosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008328 // ionotropic glutamate receptor complex // traceable author statement /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // not recorded /// 0031594 // neuromuscular junction // inferred from direct assay /// 0032279 // asymmetric synapse // inferred from direct assay /// 0032281 // alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex // not recorded /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0044309 // neuron spine // inferred from direct assay /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from mutant phenotype /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0001965 // G-protein alpha-subunit binding // inferred from physical interaction /// 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from direct assay /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008179 // adenylate cyclase binding // inferred from direct assay /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0031267 // small GTPase binding // inferred from physical interaction /// 0031489 // myosin V binding // inferred from physical interaction /// 0031681 // G-protein beta-subunit binding // inferred from direct assay /// 0031698 // beta-2 adrenergic receptor binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // traceable author statement /// 0051018 // protein kinase A binding // inferred from direct assay 1371014_at BE097028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097028 /DB_XREF=gi:8487959 /DB_XREF=UI-R-BO1-apw-b-08-0-UI.s1 /CLONE=UI-R-BO1-apw-b-08-0-UI /FEA=mRNA /CNT=6 /TID=Rn.45523.1 /TIER=ConsEnd /STK=1 /UG=Rn.45523 /LL=24654 /UG_GENE=Plcb1 /UG_TITLE=Phospholipase C-beta1 BE097028 phospholipase C, beta 1 (phosphoinositide-specific) Plcb1 24654 NM_001077641 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006800 // oxygen and reactive oxygen species metabolic process // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0007612 // learning // inferred from expression pattern /// 0007613 // memory // inferred from expression pattern /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030384 // phosphoinositide metabolic process // inferred from expression pattern 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004435 // phosphoinositide phospholipase C activity // inferred from direct assay /// 0004435 // phosphoinositide phospholipase C activity // inferred from electronic annotation /// 0004629 // phospholipase C activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay 1371015_at X52711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X52711.1 /DB_XREF=gi:56720 /FEA=mRNA /CNT=4 /TID=Rn.10373.1 /TIER=ConsEnd /STK=1 /UG=Rn.10373 /UG_TITLE=Rat mRNA for Mx1 protein /DEF=Rat mRNA for Mx1 protein. X52711 myxovirus (influenza virus) resistance 1 Mx1 24575 NM_173096 0009615 // response to virus // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1371016_at BM386010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386010 /DB_XREF=gi:18186063 /DB_XREF=UI-R-DN1-ckf-l-11-0-UI.s1 /CLONE=UI-R-DN1-ckf-l-11-0-UI /FEA=mRNA /CNT=4 /TID=Rn.9949.1 /TIER=ConsEnd /STK=1 /UG=Rn.9949 /UG_TITLE=Rat T-cell receptor active alpha-chain C-region mRNA, partial cds, clone TRA29 BM386010 similar to RIKEN cDNA A430107P09 gene-like /// similar to RIKEN cDNA A430107P09 gene LOC100364854 /// LOC290071 100364854 /// 290071 XM_002725101 0004872 // receptor activity // inferred from electronic annotation 1371017_at Z27087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Z27087.1 /DB_XREF=gi:558686 /FEA=mRNA /CNT=3 /TID=Rn.10427.1 /TIER=ConsEnd /STK=1 /UG=Rn.10427 /UG_TITLE=R.norvegicus (F344Crj)rearranged mRNA for T-cell receptor gamma chain (1483bp) /DEF=R.norvegicus (F344Crj)rearranged mRNA for T-cell receptor gamma chain (1483bp). Z27087 1371018_at BF411765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411765 /DB_XREF=gi:11399754 /DB_XREF=UI-R-BT1-bmq-g-12-0-UI.s1 /CLONE=UI-R-BT1-bmq-g-12-0-UI /FEA=mRNA /CNT=4 /TID=Rn.48666.1 /TIER=ConsEnd /STK=1 /UG=Rn.48666 /LL=83465 /UG_GENE=Celsr2 /UG_TITLE=cadherin EGF LAG seven-pas G-type receptor 2 BF411765 cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila) Celsr2 83465 NM_001191110 /// XM_001070611 /// XM_001076220 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0021999 // neural plate anterior/posterior regionalization // inferred from electronic annotation /// 0021999 // neural plate anterior/posterior regionalization // not recorded /// 0022407 // regulation of cell-cell adhesion // inferred from mutant phenotype /// 0032583 // regulation of gene-specific transcription // inferred from electronic annotation /// 0032583 // regulation of gene-specific transcription // not recorded /// 0048813 // dendrite morphogenesis // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371019_at BM387324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387324 /DB_XREF=gi:18187377 /DB_XREF=UI-R-CN1-cjh-p-21-0-UI.s1 /CLONE=UI-R-CN1-cjh-p-21-0-UI /FEA=mRNA /CNT=3 /TID=Rn.64574.1 /TIER=ConsEnd /STK=1 /UG=Rn.64574 /LL=78969 /UG_GENE=Gig2 /UG_TITLE=G-protein-coupled receptor induced protein GIG2 BM387324 tribbles homolog 1 (Drosophila) Trib1 78969 NM_023985 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0007254 // JNK cascade // inferred from electronic annotation /// 0007254 // JNK cascade // not recorded /// 0014912 // negative regulation of smooth muscle cell migration // inferred from electronic annotation /// 0014912 // negative regulation of smooth muscle cell migration // not recorded /// 0031665 // negative regulation of lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0031665 // negative regulation of lipopolysaccharide-mediated signaling pathway // not recorded /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0043405 // regulation of MAP kinase activity // inferred from electronic annotation /// 0043405 // regulation of MAP kinase activity // not recorded /// 0043433 // negative regulation of transcription factor activity // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048662 // negative regulation of smooth muscle cell proliferation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004672 // protein kinase activity // inferred from electronic annotation /// 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0004860 // protein kinase inhibitor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0031434 // mitogen-activated protein kinase kinase binding // inferred from electronic annotation /// 0031434 // mitogen-activated protein kinase kinase binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0055106 // ubiquitin-protein ligase regulator activity // inferred from electronic annotation /// 0055106 // ubiquitin-protein ligase regulator activity // not recorded 1371020_at BE102826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102826 /DB_XREF=gi:8494925 /DB_XREF=UI-R-BT1-aqt-g-03-0-UI.s1 /CLONE=UI-R-BT1-aqt-g-03-0-UI /FEA=mRNA /CNT=3 /TID=Rn.54192.1 /TIER=ConsEnd /STK=1 /UG=Rn.54192 /UG_TITLE=Rattus norvegicus RIM binding protein 2 (Rbp2) mRNA, partial cds BE102826 RIMS binding protein 2 Rimbp2 266780 NM_001100488 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 1371021_at AW917073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917073 /DB_XREF=gi:8082814 /DB_XREF=EST348377 /CLONE=RGIDY94 /FEA=mRNA /CNT=11 /TID=Rn.10687.1 /TIER=ConsEnd /STK=0 /UG=Rn.10687 /LL=25227 /UG_GENE=Arsb /UG_TITLE=Arylsulfatase B (MPS VI) AW917073 arylsulfatase B Arsb 25227 NM_033443 0006914 // autophagy // inferred from direct assay /// 0007417 // central nervous system development // inferred from direct assay /// 0007584 // response to nutrient // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009268 // response to pH // inferred from direct assay /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0051597 // response to methylmercury // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0003943 // N-acetylgalactosamine-4-sulfatase activity // inferred from electronic annotation /// 0004065 // arylsulfatase activity // not recorded /// 0004065 // arylsulfatase activity // traceable author statement /// 0004065 // arylsulfatase activity // inferred from electronic annotation /// 0008484 // sulfuric ester hydrolase activity // inferred from direct assay /// 0008484 // sulfuric ester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371022_a_at M32725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M32725.1 /DB_XREF=gi:203965 /FEA=mRNA /CNT=9 /TID=Rn.9964.2 /TIER=ConsEnd /STK=0 /UG=Rn.9964 /LL=64679 /UG_GENE=Dp1 /UG_TITLE=dorsal protein 1 /DEF=Rat dorsal protein 1 mRNA, 3 end. M32725 transglutaminase 4 (prostate) Tgm4 64679 NM_022713 0018149 // peptide cross-linking // inferred from electronic annotation /// 0042628 // mating plug formation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0003810 // protein-glutamine gamma-glutamyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371023_at AW524873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524873 /DB_XREF=gi:7167258 /DB_XREF=UI-R-BO0-aid-c-07-0-UI.s1 /CLONE=UI-R-BO0-aid-c-07-0-UI /FEA=mRNA /CNT=12 /TID=Rn.12045.1 /TIER=ConsEnd /STK=0 /UG=Rn.12045 /LL=114029 /UG_GENE=Egfl4 /UG_TITLE=EGF-like-domain, multiple 4 AW524873 multiple EGF-like-domains 8 Megf8 114029 XM_001077319 /// XM_341803 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1371024_at AW527515 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527515 /DB_XREF=gi:7169929 /DB_XREF=UI-R-BO1-ajv-b-09-0-UI.s1 /CLONE=UI-R-BO1-ajv-b-09-0-UI /FEA=mRNA /CNT=9 /TID=Rn.10455.1 /TIER=ConsEnd /STK=0 /UG=Rn.10455 /LL=116639 /UG_GENE=Cutl1 /UG_TITLE=cut (Drosophila)-like 1 AW527515 cut-like homeobox 1 Cux1 116639 XM_001070410 /// XM_347163 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000301 // retrograde transport, vesicle recycling within Golgi // inferred from mutant phenotype /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0042491 // auditory receptor cell differentiation // inferred from electronic annotation /// 0042491 // auditory receptor cell differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0000139 // Golgi membrane // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030674 // protein binding, bridging // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1371025_at Y18566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y18566.1 /DB_XREF=gi:6689088 /GEN=MASP-2 /FEA=mRNA /CNT=8 /TID=Rn.7839.1 /TIER=ConsEnd /STK=0 /UG=Rn.7839 /LL=64459 /DEF=Rattus Norvegicus mRNA for MASP-2 protein, partial, clone prl-3. /PROD=MASP-2 protein Y18566 mannan-binding lectin serine peptidase 2 Masp2 64459 NM_172043 0001867 // complement activation, lectin pathway // not recorded /// 0001867 // complement activation, lectin pathway // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006956 // complement activation // non-traceable author statement /// 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation 1371026_at AY057064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY057064.1 /DB_XREF=gi:16555337 /FEA=mRNA /CNT=7 /TID=Rn.42366.1 /TIER=ConsEnd /STK=0 /UG=Rn.42366 /DEF=Rattus norvegicus liprin alpha 4 mRNA, partial cds. /PROD=liprin alpha 4 AY057064 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 Ppfia4 140592 NM_080409 0005737 // cytoplasm // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation 0005515 // protein binding // not recorded 1371027_at BF556820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556820 /DB_XREF=gi:11666550 /DB_XREF=UI-R-E1-fg-e-06-0-UI.r1 /CLONE=UI-R-E1-fg-e-06-0-UI /FEA=mRNA /CNT=7 /TID=Rn.21799.1 /TIER=ConsEnd /STK=0 /UG=Rn.21799 /LL=171136 /UG_GENE=Cblb /UG_TITLE=Cas-Br-M (murine) ectropic retroviral transforming sequence b BF556820 Cas-Br-M (murine) ecotropic retroviral transforming sequence b Cblb 171136 NM_133601 0002669 // positive regulation of T cell anergy // not recorded /// 0006955 // immune response // not recorded /// 0007165 // signal transduction // inferred from direct assay /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0009629 // response to gravity // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0023034 // intracellular signaling pathway // not recorded /// 0042110 // T cell activation // not recorded /// 0045732 // positive regulation of protein catabolic process // not recorded /// 0046642 // negative regulation of alpha-beta T cell proliferation // not recorded /// 0050860 // negative regulation of T cell receptor signaling pathway // not recorded /// 0051789 // response to protein stimulus // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1371028_at AW917192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917192 /DB_XREF=gi:8082937 /DB_XREF=EST348496 /CLONE=RGIEA44 /FEA=mRNA /CNT=13 /TID=Rn.11349.1 /TIER=ConsEnd /STK=0 /UG=Rn.11349 /UG_TITLE=Rat mRNA for trans-Golgi network integral membrane protein TGN38 AW917192 trans-golgi network protein Tgoln1 192152 NM_138840 0006895 // Golgi to endosome transport // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1371029_at AW916437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916437 /DB_XREF=gi:8082162 /DB_XREF=EST347741 /CLONE=RGIDQ14 /FEA=mRNA /CNT=9 /TID=Rn.64559.1 /TIER=ConsEnd /STK=0 /UG=Rn.64559 /LL=24650 /UG_GENE=Pkd1 /UG_TITLE=Polycystic kidney disease 1 AW916437 polycystic kidney disease 1 homolog (human) Pkd1 24650 XM_002724589 /// XM_002727753 /// XM_002727754 0001502 // cartilage condensation // inferred from electronic annotation /// 0001502 // cartilage condensation // not recorded /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006812 // cation transport // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007259 // JAK-STAT cascade // inferred from electronic annotation /// 0007259 // JAK-STAT cascade // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0016337 // cell-cell adhesion // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0050982 // detection of mechanical stimulus // inferred from electronic annotation /// 0050982 // detection of mechanical stimulus // not recorded 0002133 // polycystin complex // inferred from electronic annotation /// 0002133 // polycystin complex // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005794 // Golgi apparatus // inferred from mutant phenotype /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005929 // cilium // not recorded /// 0005929 // cilium // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // inferred from direct assay /// 0031512 // motile primary cilium // inferred from electronic annotation /// 0031512 // motile primary cilium // not recorded 0005261 // cation channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1371030_at BI291181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291181 /DB_XREF=gi:14950483 /DB_XREF=UI-R-DK0-cgh-f-04-0-UI.s1 /CLONE=UI-R-DK0-cgh-f-04-0-UI /FEA=mRNA /CNT=9 /TID=Rn.84.1 /TIER=ConsEnd /STK=0 /UG=Rn.84 /LL=94168 /UG_GENE=LOC94168 /UG_TITLE=spp-24 precursor BI291181 secreted phosphoprotein 2 Spp2 94168 NM_053577 0006461 // protein complex assembly // inferred from physical interaction /// 0046849 // bone remodeling // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 1371031_at AI454484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454484 /DB_XREF=gi:4294050 /DB_XREF=UI-R-A0-bn-f-01-0-UI.s1 /CLONE=UI-R-A0-bn-f-01-0-UI /FEA=mRNA /CNT=8 /TID=Rn.10418.1 /TIER=ConsEnd /STK=0 /UG=Rn.10418 /LL=25331 /UG_GENE=Mat1a /UG_TITLE=S - adenosylmethionine synthetase AI454484 methionine adenosyltransferase I, alpha Mat1a 25331 NM_012860 0006556 // S-adenosylmethionine biosynthetic process // inferred from direct assay /// 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051289 // protein homotetramerization // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0004478 // methionine adenosyltransferase activity // inferred from direct assay /// 0004478 // methionine adenosyltransferase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043531 // ADP binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1371032_at BG372942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372942 /DB_XREF=gi:13269479 /DB_XREF=UI-R-CV1-bru-g-02-0-UI.s1 /CLONE=UI-R-CV1-bru-g-02-0-UI /FEA=mRNA /CNT=6 /TID=Rn.15494.1 /TIER=ConsEnd /STK=0 /UG=Rn.15494 /LL=25494 /UG_GENE=Nid /UG_TITLE=Nidogen (entactin) BG372942 nidogen 1 Nid1 25494 XM_001054079 /// XM_213954 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0008218 // bioluminescence // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // not recorded /// 0018298 // protein-chromophore linkage // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0032836 // glomerular basement membrane development // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005518 // collagen binding // not recorded /// 0043237 // laminin-1 binding // not recorded /// 0050840 // extracellular matrix binding // not recorded 1371033_at AI715202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715202 /DB_XREF=gi:5032455 /DB_XREF=UI-R-Y0-abn-e-07-0-UI.s1 /CLONE=UI-R-Y0-abn-e-07-0-UI /FEA=mRNA /CNT=8 /TID=Rn.20089.1 /TIER=ConsEnd /STK=0 /UG=Rn.20089 /UG_TITLE=Rat mRNA for MHC class II antigen RT1.B-1 beta-chain AI715202 RT1 class II, locus Bb RT1-Bb 309622 NM_001004084 0002504 // antigen processing and presentation of peptide or polysaccharide antigen via MHC class II // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0006955 // immune response // not recorded /// 0019882 // antigen processing and presentation // not recorded /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // not recorded /// 0048002 // antigen processing and presentation of peptide antigen // inferred from electronic annotation /// 0048002 // antigen processing and presentation of peptide antigen // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005769 // early endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005771 // multivesicular body // inferred from electronic annotation /// 0005771 // multivesicular body // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0042613 // MHC class II protein complex // inferred from electronic annotation /// 0042613 // MHC class II protein complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042605 // peptide antigen binding // inferred from electronic annotation /// 0042605 // peptide antigen binding // not recorded 1371034_at BF396189 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396189 /DB_XREF=gi:11381201 /DB_XREF=UI-R-BS2-bdv-g-06-0-UI.s1 /CLONE=UI-R-BS2-bdv-g-06-0-UI /FEA=mRNA /CNT=7 /TID=Rn.48812.2 /TIER=ConsEnd /STK=0 /UG=Rn.48812 /LL=25231 /UG_GENE=Hnf6 /UG_TITLE=Hepatocyte nuclear factor 6 BF396189 one cut homeobox 1 Onecut1 25231 NM_022671 0001889 // liver development // not recorded /// 0001952 // regulation of cell-matrix adhesion // not recorded /// 0002064 // epithelial cell development // not recorded /// 0006006 // glucose metabolic process // inferred from mutant phenotype /// 0006006 // glucose metabolic process // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0007492 // endoderm development // not recorded /// 0009653 // anatomical structure morphogenesis // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0030154 // cell differentiation // not recorded /// 0030183 // B cell differentiation // not recorded /// 0030335 // positive regulation of cell migration // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0031016 // pancreas development // not recorded /// 0031018 // endocrine pancreas development // not recorded /// 0042384 // cilium assembly // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048536 // spleen development // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from mutant phenotype /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1371035_at BE098763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098763 /DB_XREF=gi:8490632 /DB_XREF=UI-R-BJ1-atd-f-03-0-UI.s1 /CLONE=UI-R-BJ1-atd-f-03-0-UI /FEA=mRNA /CNT=7 /TID=Rn.39968.1 /TIER=ConsEnd /STK=0 /UG=Rn.39968 /UG_TITLE=Rattus norvegicus transcription factor IIIA mRNA, partial cds BE098763 general transcription factor III A Gtf3a 246299 NM_001113570 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371036_at BG671431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671431 /DB_XREF=gi:13893530 /DB_XREF=DRNBRD01 /CLONE=DRNBRD01 /FEA=mRNA /CNT=6 /TID=Rn.10691.1 /TIER=ConsEnd /STK=0 /UG=Rn.10691 /LL=25691 /UG_GENE=Nrcam /UG_TITLE=Neuron-glia-CAM-related cell adhesion molecule BG671431 neuronal cell adhesion molecule Nrcam 497815 NM_013150 0007155 // cell adhesion // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0019227 // neuronal action potential propagation // inferred from electronic annotation /// 0019227 // neuronal action potential propagation // not recorded /// 0045162 // clustering of voltage-gated sodium channels // not recorded /// 0045162 // clustering of voltage-gated sodium channels // inferred from sequence or structural similarity 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030506 // ankyrin binding // not recorded /// 0030506 // ankyrin binding // inferred from sequence or structural similarity /// 0030506 // ankyrin binding // traceable author statement 1371037_at U06230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U06230.1 /DB_XREF=gi:497116 /FEA=mRNA /CNT=6 /TID=Rn.2888.1 /TIER=ConsEnd /STK=0 /UG=Rn.2888 /LL=81750 /UG_GENE=Pros1 /DEF=Rattus norvegicus protein S mRNA, partial cds. /PROD=protein S U06230 protein S (alpha) Pros1 81750 NM_031086 0007596 // blood coagulation // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0050766 // positive regulation of phagocytosis // inferred from direct assay /// 0050819 // negative regulation of coagulation // inferred from direct assay /// 0050819 // negative regulation of coagulation // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay 1371038_at X64403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X64403.1 /DB_XREF=gi:55927 /GEN=cebp gamma /FEA=mRNA /CNT=6 /TID=Rn.10332.1 /TIER=ConsEnd /STK=0 /UG=Rn.10332 /LL=25301 /DEF=R.norvegicus cebp gamma mRNA. /PROD=CCAAT enhancer binding protein gamma X64403 CCAAT/enhancer binding protein (C/EBP), gamma Cebpg 25301 NM_012831 0001889 // liver development // inferred from expression pattern /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from expression pattern /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006955 // immune response // not recorded /// 0006955 // immune response // inferred from sequence or structural similarity /// 0006955 // immune response // inferred from electronic annotation /// 0016071 // mRNA metabolic process // inferred from electronic annotation /// 0016071 // mRNA metabolic process // not recorded /// 0030183 // B cell differentiation // not recorded /// 0030183 // B cell differentiation // inferred from sequence or structural similarity /// 0030183 // B cell differentiation // inferred from electronic annotation /// 0042267 // natural killer cell mediated cytotoxicity // not recorded /// 0042267 // natural killer cell mediated cytotoxicity // inferred from sequence or structural similarity /// 0042267 // natural killer cell mediated cytotoxicity // inferred from electronic annotation /// 0043353 // enucleate erythrocyte differentiation // not recorded /// 0043353 // enucleate erythrocyte differentiation // inferred from sequence or structural similarity /// 0043353 // enucleate erythrocyte differentiation // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0043433 // negative regulation of transcription factor activity // inferred from sequence or structural similarity /// 0043433 // negative regulation of transcription factor activity // inferred from electronic annotation /// 0045078 // positive regulation of interferon-gamma biosynthetic process // not recorded /// 0045078 // positive regulation of interferon-gamma biosynthetic process // inferred from sequence or structural similarity /// 0045078 // positive regulation of interferon-gamma biosynthetic process // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045739 // positive regulation of DNA repair // not recorded /// 0045739 // positive regulation of DNA repair // inferred from sequence or structural similarity /// 0045739 // positive regulation of DNA repair // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from sequence or structural similarity /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016563 // transcription activator activity // traceable author statement /// 0016564 // transcription repressor activity // traceable author statement /// 0042803 // protein homodimerization activity // traceable author statement /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // traceable author statement /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1371039_at L02315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L02315.1 /DB_XREF=gi:203126 /FEA=mRNA /CNT=5 /TID=Rn.9863.1 /TIER=ConsEnd /STK=0 /UG=Rn.9863 /LL=58942 /UG_GENE=Cacnb4 /UG_TITLE=calcium channel beta 4 subunit /DEF=Rattus norvegicus cDNA sequence, complete 5 and 3 prime UTRs. L02315 calcium channel, voltage-dependent, beta 4 subunit Cacnb4 58942 NM_001105733 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from mutant phenotype /// 0006816 // calcium ion transport // not recorded /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0007214 // gamma-aminobutyric acid signaling pathway // not recorded /// 0007528 // neuromuscular junction development // not recorded /// 0007628 // adult walking behavior // not recorded /// 0014051 // gamma-aminobutyric acid secretion // not recorded /// 0019227 // neuronal action potential propagation // not recorded /// 0030217 // T cell differentiation // not recorded /// 0035249 // synaptic transmission, glutamatergic // not recorded /// 0042391 // regulation of membrane potential // not recorded /// 0046058 // cAMP metabolic process // not recorded /// 0048536 // spleen development // not recorded /// 0048538 // thymus development // not recorded /// 0048541 // Peyer's patch development // not recorded /// 0048747 // muscle fiber development // not recorded /// 0050852 // T cell receptor signaling pathway // not recorded /// 0050877 // neurological system process // not recorded /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0051932 // synaptic transmission, GABAergic // not recorded /// 0070588 // calcium ion transmembrane transport // not recorded 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005891 // voltage-gated calcium channel complex // inferred from mutant phenotype /// 0005891 // voltage-gated calcium channel complex // not recorded /// 0045202 // synapse // not recorded 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from mutant phenotype /// 0005245 // voltage-gated calcium channel activity // not recorded /// 0005515 // protein binding // not recorded /// 0008331 // high voltage-gated calcium channel activity // not recorded 1371040_at BG372334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372334 /DB_XREF=gi:13268871 /DB_XREF=UI-R-CV0-brr-e-03-0-UI.s1 /CLONE=UI-R-CV0-brr-e-03-0-UI /FEA=mRNA /CNT=5 /TID=Rn.28965.1 /TIER=ConsEnd /STK=0 /UG=Rn.28965 /UG_TITLE=Rattus norvegicus mRNA for sodium-dependent neutral amino acid transporter, ASCT2 BG372334 solute carrier family 1 (neutral amino acid transporter), member 5 Slc1a5 292657 NM_175758 0003333 // amino acid transmembrane transport // not recorded /// 0006835 // dicarboxylic acid transport // inferred from electronic annotation /// 0006860 // extracellular amino acid transport // inferred from mutant phenotype /// 0006865 // amino acid transport // not recorded /// 0015804 // neutral amino acid transport // not recorded /// 0015825 // L-serine transport // inferred from direct assay 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0015171 // amino acid transmembrane transporter activity // inferred from mutant phenotype /// 0015171 // amino acid transmembrane transporter activity // not recorded /// 0015175 // neutral amino acid transmembrane transporter activity // not recorded /// 0015194 // L-serine transmembrane transporter activity // inferred from direct assay /// 0016595 // glutamate binding // traceable author statement /// 0017153 // sodium:dicarboxylate symporter activity // inferred from electronic annotation 1371041_at M22756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M22756.1 /DB_XREF=gi:205627 /FEA=mRNA /CNT=5 /TID=Rn.11092.1 /TIER=ConsEnd /STK=0 /UG=Rn.11092 /LL=81728 /UG_GENE=Ndufv2 /UG_TITLE=24-kDa subunit of mitochondrial NADH dehydrogenase /DEF=Rat 24-kDa subunit of mitochondrial NADH dehydrogenase mRNA, 3 end. M22756 NADH dehydrogenase (ubiquinone) flavoprotein 2 Ndufv2 81728 NM_031064 0006120 // mitochondrial electron transport, NADH to ubiquinone // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0022900 // electron transport chain // inferred from electronic annotation /// 0048738 // cardiac muscle tissue development // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0003954 // NADH dehydrogenase activity // inferred from electronic annotation /// 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from electronic annotation /// 0008137 // NADH dehydrogenase (ubiquinone) activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation 1371042_at BG664160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664160 /DB_XREF=gi:13886082 /DB_XREF=DRABAB05 /CLONE=DRABAB05 /FEA=mRNA /CNT=7 /TID=Rn.25016.1 /TIER=ConsEnd /STK=0 /UG=Rn.25016 /LL=170920 /UG_GENE=Map4k3 /UG_TITLE=mitogen-activated protein kinase kinase kinase kinase 3 BG664160 mitogen-activated protein kinase kinase kinase kinase 3 Map4k3 170920 NM_133407 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006950 // response to stress // not recorded /// 0006950 // response to stress // inferred from sequence or structural similarity /// 0007243 // intracellular protein kinase cascade // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1371043_a_at BE107327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107327 /DB_XREF=gi:8499432 /DB_XREF=UI-R-BS1-ays-e-02-0-UI.s1 /CLONE=UI-R-BS1-ays-e-02-0-UI /FEA=EST /CNT=8 /TID=Rn.11354.5 /TIER=Stack /STK=7 /UG=Rn.11354 /LL=29588 /UG_GENE=Pou3f2 /UG_TITLE=POU domain, class 3, transcription factor 2 BE107327 POU class 3 homeobox 3 Pou3f3 192109 NM_138837 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // non-traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0010628 // positive regulation of gene expression // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0021799 // cerebral cortex radially oriented cell migration // inferred from electronic annotation /// 0021799 // cerebral cortex radially oriented cell migration // not recorded /// 0021869 // forebrain ventricular zone progenitor cell division // inferred from electronic annotation /// 0021869 // forebrain ventricular zone progenitor cell division // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0072218 // metanephric ascending thin limb development // inferred from sequence or structural similarity /// 0072227 // metanephric macula densa development // not recorded /// 0072227 // metanephric macula densa development // inferred from sequence or structural similarity /// 0072233 // metanephric thick ascending limb development // not recorded /// 0072233 // metanephric thick ascending limb development // inferred from sequence or structural similarity /// 0072236 // metanephric loop of Henle development // not recorded /// 0072236 // metanephric loop of Henle development // inferred from sequence or structural similarity /// 0072240 // metanephric DCT cell differentiation // not recorded /// 0072240 // metanephric DCT cell differentiation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // inferred from direct assay /// 0016563 // transcription activator activity // inferred from genetic interaction /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1371044_at BF410284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410284 /DB_XREF=gi:11398259 /DB_XREF=UI-R-CA1-bjv-f-12-0-UI.s1 /CLONE=UI-R-CA1-bjv-f-12-0-UI /FEA=mRNA /CNT=6 /TID=Rn.39142.1 /TIER=ConsEnd /STK=0 /UG=Rn.39142 /LL=81744 /UG_GENE=Pde7a /UG_TITLE=rolipram-insensitive phosphodiesterase type 7 BF410284 phosphodiesterase 7A Pde7a 81744 NM_031080 0007165 // signal transduction // inferred from electronic annotation /// 0019933 // cAMP-mediated signaling // inferred from expression pattern 0003824 // catalytic activity // inferred from electronic annotation /// 0004112 // cyclic-nucleotide phosphodiesterase activity // inferred from mutant phenotype /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // not recorded /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // traceable author statement /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371045_at AJ309926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ309926.1 /DB_XREF=gi:14799388 /GEN=asic 1b /FEA=mRNA /CNT=5 /TID=Rn.37385.3 /TIER=ConsEnd /STK=0 /UG=Rn.37385 /LL=79123 /DEF=Rattus norvegicus mRNA for ion channel (asic 1b gene). /PROD=ion channel AJ309926 amiloride-sensitive cation channel 2, neuronal Accn2 79123 NM_024154 0001101 // response to acid // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0007613 // memory // not recorded /// 0008306 // associative learning // not recorded /// 0019233 // sensory perception of pain // non-traceable author statement /// 0034220 // ion transmembrane transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // not recorded 0005216 // ion channel activity // inferred from direct assay /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // not recorded /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015280 // ligand-gated sodium channel activity // inferred from electronic annotation 1371046_at AW920849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920849 /DB_XREF=gi:8086665 /DB_XREF=EST352153 /CLONE=RGIHD91 /FEA=mRNA /CNT=5 /TID=Rn.21558.1 /TIER=ConsEnd /STK=0 /UG=Rn.21558 /UG_TITLE=Rattus norvegicus beta II spectrin-short isoform mRNA, partial cds AW920849 spectrin, beta, non-erythrocytic 1 Sptbn1 305614 NM_001013130 0007182 // common-partner SMAD protein phosphorylation // not recorded /// 0007182 // common-partner SMAD protein phosphorylation // inferred from electronic annotation /// 0007184 // SMAD protein nuclear translocation // not recorded /// 0007184 // SMAD protein nuclear translocation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008091 // spectrin // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // not recorded /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0032437 // cuticular plate // not recorded /// 0032437 // cuticular plate // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1371047_at L21672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L21672.1 /DB_XREF=gi:310125 /FEA=mRNA /CNT=4 /TID=Rn.34566.1 /TIER=ConsEnd /STK=0 /UG=Rn.34566 /LL=171148 /UG_GENE=Slc6a5 /UG_TITLE=solute carrier family 6 (neurotransmitter transporter, glycine), member 5 /DEF=Rat mRNA sequence. L21672 solute carrier family 6 (neurotransmitter transporter, glycine), member 5 Slc6a5 171148 NM_203334 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0015816 // glycine transport // inferred from direct assay 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0015187 // glycine transmembrane transporter activity // inferred from direct assay /// 0015293 // symporter activity // inferred from electronic annotation 1371048_at Y11321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y11321.1 /DB_XREF=gi:2105084 /GEN=ttf-2 /FEA=mRNA /CNT=4 /TID=Rn.26546.1 /TIER=ConsEnd /STK=0 /UG=Rn.26546 /DEF=R.norvegicus mRNA for fork head protein TTF-2. /PROD=TTF-2 protein Y11321 forkhead box E1 (thyroid transcription factor 2) Foxe1 192274 NM_138909 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006590 // thyroid hormone generation // inferred from electronic annotation /// 0006590 // thyroid hormone generation // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0030878 // thyroid gland development // inferred from electronic annotation /// 0030878 // thyroid gland development // not recorded /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0048562 // embryonic organ morphogenesis // inferred from electronic annotation /// 0048562 // embryonic organ morphogenesis // not recorded /// 0060022 // hard palate development // inferred from electronic annotation /// 0060022 // hard palate development // not recorded /// 0060023 // soft palate development // inferred from electronic annotation /// 0060023 // soft palate development // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from mutant phenotype /// 0016564 // transcription repressor activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1371049_at BF413467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413467 /DB_XREF=gi:11401456 /DB_XREF=UI-R-BT1-bob-e-06-0-UI.s1 /CLONE=UI-R-BT1-bob-e-06-0-UI /FEA=mRNA /CNT=4 /TID=Rn.10503.1 /TIER=ConsEnd /STK=0 /UG=Rn.10503 /LL=25417 /UG_GENE=Crmp3 /UG_TITLE=Collapsin response mediator protein 3 BF413467 dihydropyrimidinase-like 4 Dpysl4 25417 NM_012933 0048666 // neuron development // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation 1371050_at AI717733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717733 /DB_XREF=gi:5034989 /DB_XREF=UI-R-Y0-acq-h-05-0-UI.s1 /CLONE=UI-R-Y0-acq-h-05-0-UI /FEA=mRNA /CNT=4 /TID=Rn.20732.1 /TIER=ConsEnd /STK=0 /UG=Rn.20732 /LL=84024 /UG_GENE=Pon1 /UG_TITLE=paraoxonase 1 AI717733 paraoxonase 1 Pon1 84024 NM_032077 0006629 // lipid metabolic process // inferred from expression pattern /// 0008203 // cholesterol metabolic process // not recorded /// 0009636 // response to toxin // inferred from electronic annotation /// 0009636 // response to toxin // not recorded /// 0010875 // positive regulation of cholesterol efflux // inferred from electronic annotation /// 0010875 // positive regulation of cholesterol efflux // not recorded /// 0019439 // aromatic compound catabolic process // inferred from electronic annotation /// 0019439 // aromatic compound catabolic process // not recorded /// 0032411 // positive regulation of transporter activity // inferred from electronic annotation /// 0032411 // positive regulation of transporter activity // not recorded /// 0034445 // negative regulation of plasma lipoprotein oxidation // not recorded /// 0046395 // carboxylic acid catabolic process // inferred from electronic annotation /// 0046395 // carboxylic acid catabolic process // not recorded /// 0046434 // organophosphate catabolic process // inferred from electronic annotation /// 0046434 // organophosphate catabolic process // not recorded /// 0046470 // phosphatidylcholine metabolic process // inferred from electronic annotation /// 0046470 // phosphatidylcholine metabolic process // not recorded /// 0051099 // positive regulation of binding // inferred from electronic annotation /// 0051099 // positive regulation of binding // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0034364 // high-density lipoprotein particle // not recorded /// 0034364 // high-density lipoprotein particle // inferred from electronic annotation /// 0034366 // spherical high-density lipoprotein particle // inferred from electronic annotation /// 0034366 // spherical high-density lipoprotein particle // not recorded 0004063 // aryldialkylphosphatase activity // inferred from direct assay /// 0004063 // aryldialkylphosphatase activity // not recorded /// 0004063 // aryldialkylphosphatase activity // inferred from sequence or structural similarity /// 0004063 // aryldialkylphosphatase activity // inferred from electronic annotation /// 0004064 // arylesterase activity // not recorded /// 0004064 // arylesterase activity // inferred from sequence or structural similarity /// 0004064 // arylesterase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005543 // phospholipid binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1371051_at BG664035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664035 /DB_XREF=gi:13885957 /DB_XREF=DRAACB07 /CLONE=DRAACB07 /FEA=mRNA /CNT=4 /TID=Rn.3796.2 /TIER=ConsEnd /STK=0 /UG=Rn.3796 /UG_TITLE=Rattus norvegicus putative ionotropic glutamate receptor GLURR-F11694B (Glurr) mRNA, partial cds BG664035 glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A Grinl1a 192147 NM_183402 0006350 // transcription // inferred from electronic annotation /// 0051685 // maintenance of ER location // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0043025 // neuronal cell body // not recorded 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation 1371052_at AA859752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859752 /DB_XREF=gi:4230295 /DB_XREF=UI-R-E0-bx-c-07-0-UI.s1 /CLONE=UI-R-E0-bx-c-07-0-UI /FEA=mRNA /CNT=4 /TID=Rn.10154.1 /TIER=ConsEnd /STK=0 /UG=Rn.10154 /LL=25495 /UG_GENE=Nog /UG_TITLE=Noggin AA859752 noggin Nog 25495 NM_012990 0001501 // skeletal system development // not recorded /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0001649 // osteoblast differentiation // inferred from sequence or structural similarity /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001655 // urogenital system development // inferred from electronic annotation /// 0001655 // urogenital system development // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001837 // epithelial to mesenchymal transition // not recorded /// 0001837 // epithelial to mesenchymal transition // inferred from sequence or structural similarity /// 0001837 // epithelial to mesenchymal transition // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007417 // central nervous system development // not recorded /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0021915 // neural tube development // inferred from electronic annotation /// 0021915 // neural tube development // not recorded /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0021983 // pituitary gland development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030509 // BMP signaling pathway // not recorded /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030510 // regulation of BMP signaling pathway // not recorded /// 0030510 // regulation of BMP signaling pathway // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0030514 // negative regulation of BMP signaling pathway // inferred from sequence or structural similarity /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation /// 0030900 // forebrain development // inferred from expression pattern /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0035019 // somatic stem cell maintenance // not recorded /// 0042060 // wound healing // not recorded /// 0042060 // wound healing // inferred from sequence or structural similarity /// 0042060 // wound healing // inferred from electronic annotation /// 0042474 // middle ear morphogenesis // inferred from electronic annotation /// 0042474 // middle ear morphogenesis // not recorded /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // not recorded /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045664 // regulation of neuron differentiation // inferred from mutant phenotype /// 0048570 // notochord morphogenesis // inferred from electronic annotation /// 0048570 // notochord morphogenesis // not recorded /// 0048646 // anatomical structure formation involved in morphogenesis // inferred from electronic annotation /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded /// 0048706 // embryonic skeletal system development // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // not recorded /// 0048712 // negative regulation of astrocyte differentiation // inferred from mutant phenotype /// 0048712 // negative regulation of astrocyte differentiation // not recorded /// 0048712 // negative regulation of astrocyte differentiation // inferred from sequence or structural similarity /// 0048712 // negative regulation of astrocyte differentiation // inferred from electronic annotation /// 0048762 // mesenchymal cell differentiation // inferred from electronic annotation /// 0048762 // mesenchymal cell differentiation // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0051216 // cartilage development // inferred from electronic annotation /// 0060044 // negative regulation of cardiac muscle cell proliferation // not recorded /// 0060044 // negative regulation of cardiac muscle cell proliferation // inferred from sequence or structural similarity /// 0060044 // negative regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060173 // limb development // inferred from electronic annotation /// 0060173 // limb development // not recorded /// 0060272 // embryonic skeletal joint morphogenesis // inferred from electronic annotation /// 0060272 // embryonic skeletal joint morphogenesis // not recorded /// 0060302 // negative regulation of cytokine activity // inferred from electronic annotation /// 0060302 // negative regulation of cytokine activity // not recorded /// 0060513 // prostatic bud formation // inferred from electronic annotation /// 0060513 // prostatic bud formation // not recorded /// 0060676 // ureteric bud formation // inferred from electronic annotation /// 0060676 // ureteric bud formation // not recorded /// 0061037 // negative regulation of cartilage development // inferred from electronic annotation /// 0061037 // negative regulation of cartilage development // not recorded /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // not recorded /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from sequence or structural similarity /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0090193 // positive regulation of glomerulus development // not recorded /// 0090193 // positive regulation of glomerulus development // inferred from sequence or structural similarity /// 0090193 // positive regulation of glomerulus development // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019955 // cytokine binding // inferred from electronic annotation /// 0019955 // cytokine binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1371053_at BI274412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274412 /DB_XREF=gi:14885299 /DB_XREF=UI-R-CW0-bwi-f-03-0-UI.s1 /CLONE=UI-R-CW0-bwi-f-03-0-UI /FEA=mRNA /CNT=4 /TID=Rn.34868.1 /TIER=ConsEnd /STK=0 /UG=Rn.34868 /UG_TITLE=Rat embryonic myosin heavy chain gene, partial 5 region, mRNA BI274412 myosin, heavy chain 8, skeletal muscle, perinatal Myh8 252942 NM_001100485 /// XM_001078064 /// XM_001080186 0005737 // cytoplasm // inferred from electronic annotation /// 0016459 // myosin complex // inferred from electronic annotation /// 0016459 // myosin complex // not recorded /// 0030016 // myofibril // inferred from electronic annotation /// 0032982 // myosin filament // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1371054_at BF408734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408734 /DB_XREF=gi:11396709 /DB_XREF=UI-R-BT1-bnf-e-09-0-UI.s1 /CLONE=UI-R-BT1-bnf-e-09-0-UI /FEA=mRNA /CNT=4 /TID=Rn.10219.1 /TIER=ConsEnd /STK=0 /UG=Rn.10219 /LL=24661 /UG_GENE=Pnmt /UG_TITLE=Phenylethanolamine N-methyltransferase BF408734 phenylethanolamine-N-methyltransferase Pnmt 24661 NM_031526 0042415 // norepinephrine metabolic process // inferred by curator /// 0042418 // epinephrine biosynthetic process // inferred by curator /// 0042418 // epinephrine biosynthetic process // inferred from direct assay /// 0042418 // epinephrine biosynthetic process // traceable author statement /// 0042423 // catecholamine biosynthetic process // inferred from electronic annotation /// 0046498 // S-adenosylhomocysteine metabolic process // traceable author statement /// 0046500 // S-adenosylmethionine metabolic process // traceable author statement 0005625 // soluble fraction // inferred from direct assay /// 0005829 // cytosol // not recorded 0004603 // phenylethanolamine N-methyltransferase activity // inferred from direct assay /// 0004603 // phenylethanolamine N-methyltransferase activity // not recorded /// 0004603 // phenylethanolamine N-methyltransferase activity // traceable author statement /// 0004603 // phenylethanolamine N-methyltransferase activity // inferred from electronic annotation /// 0008168 // methyltransferase activity // traceable author statement /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // traceable author statement /// 0016740 // transferase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation 1371055_at M83676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M83676.1 /DB_XREF=gi:206530 /GEN=RAB12 /FEA=mRNA /CNT=4 /TID=Rn.11021.1 /TIER=ConsEnd /STK=0 /UG=Rn.11021 /LL=25530 /UG_TITLE=RAB12, member RAS oncogene family /DEF=Sprague-Dawley (clone LRB6) RAB12 mRNA, 3end. M83676 RAB12, member RAS oncogene family Rab12 25530 NM_013017 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation 1371056_at U68726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U68726.1 /DB_XREF=gi:1785998 /FEA=mRNA /CNT=5 /TID=Rn.10667.1 /TIER=ConsEnd /STK=0 /UG=Rn.10667 /LL=81735 /UG_GENE=Neo1 /DEF=Rattus norvegicus neogenin mRNA, partial cds. /PROD=neogenin U68726 neogenin homolog 1 (chicken) Neo1 81735 NM_001191881 /// XM_001074913 /// XM_343402 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007520 // myoblast fusion // not recorded /// 0045449 // regulation of transcription // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // not recorded /// 0045296 // cadherin binding // not recorded 1371057_at AW520967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520967 /DB_XREF=gi:7163345 /DB_XREF=UI-R-BO0-agq-e-03-0-UI.s1 /CLONE=UI-R-BO0-agq-e-03-0-UI /FEA=mRNA /CNT=5 /TID=Rn.10368.1 /TIER=ConsEnd /STK=0 /UG=Rn.10368 /LL=29707 /UG_GENE=Gabra5 /UG_TITLE=gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 5 AW520967 gamma-aminobutyric acid (GABA) A receptor, alpha 5 Gabra5 29707 NM_017295 0001662 // behavioral fear response // inferred from electronic annotation /// 0001662 // behavioral fear response // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from expression pattern /// 0007268 // synaptic transmission // inferred from mutant phenotype /// 0007420 // brain development // inferred from expression pattern /// 0008306 // associative learning // inferred from electronic annotation /// 0008306 // associative learning // not recorded 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from expression pattern /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004890 // GABA-A receptor activity // inferred from direct assay /// 0004890 // GABA-A receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // traceable author statement /// 0005254 // chloride channel activity // inferred from electronic annotation 1371058_at X97477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X97477.1 /DB_XREF=gi:1289277 /FEA=mRNA /CNT=5 /TID=Rn.22823.1 /TIER=ConsEnd /STK=0 /UG=Rn.22823 /DEF=R.norvegicus mRNA for NKR-P1B protein. /PROD=NKR-P1B protein X97477 similar to Nkrp1f protein LOC689809 689809 XM_002729411 1371059_at AW919085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919085 /DB_XREF=gi:8084875 /DB_XREF=EST350389 /CLONE=RGIFC55 /FEA=mRNA /CNT=5 /TID=Rn.9742.1 /TIER=ConsEnd /STK=0 /UG=Rn.9742 /LL=29699 /UG_GENE=Prkar2a /UG_TITLE=protein kinase, cAMP dependent regulatory, type II alpha AW919085 protein kinase, cAMP dependent regulatory, type II alpha Prkar2a 29699 NM_019264 0001932 // regulation of protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0034199 // activation of protein kinase A activity // not recorded /// 0045859 // regulation of protein kinase activity // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from direct assay 0000267 // cell fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005952 // cAMP-dependent protein kinase complex // inferred from direct assay /// 0005952 // cAMP-dependent protein kinase complex // inferred from electronic annotation /// 0030315 // T-tubule // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from direct assay /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from mutant phenotype /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030552 // cAMP binding // inferred from direct assay /// 0030552 // cAMP binding // inferred from electronic annotation /// 0034236 // protein kinase A catalytic subunit binding // inferred by curator /// 0042803 // protein homodimerization activity // inferred from direct assay 1371060_at L04760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L04760.1 /DB_XREF=gi:294565 /FEA=mRNA /CNT=4 /TID=Rn.47373.1 /TIER=ConsEnd /STK=0 /UG=Rn.47373 /DEF=Rattus norvegicus nucleotide binding protein ARD 1 mRNA, partial cds. /PROD=nucleotide binding protein ARD 1 L04760 tripartite motif-containing 23 Trim23 81002 NM_001100637 /// XM_001064069 /// XM_342183 0006471 // protein ADP-ribosylation // inferred from direct assay /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from sequence or structural similarity /// 0016567 // protein ubiquitination // inferred from electronic annotation 0000139 // Golgi membrane // not recorded /// 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // not recorded /// 0005765 // lysosomal membrane // inferred from sequence or structural similarity /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0003924 // GTPase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019003 // GDP binding // not recorded /// 0019003 // GDP binding // inferred from sequence or structural similarity /// 0019003 // GDP binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371061_at BG380993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380993 /DB_XREF=gi:13305465 /DB_XREF=UI-R-CT0-bul-h-06-0-UI.s1 /CLONE=UI-R-CT0-bul-h-06-0-UI /FEA=mRNA /CNT=4 /TID=Rn.11354.3 /TIER=ConsEnd /STK=0 /UG=Rn.11354 /LL=29588 /UG_GENE=Pou3f2 /UG_TITLE=POU domain, class 3, transcription factor 2 BG380993 POU class 3 homeobox 2 Pou3f2 29588 NM_172085 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008544 // epidermis development // inferred from electronic annotation /// 0008544 // epidermis development // not recorded /// 0014002 // astrocyte development // inferred from electronic annotation /// 0014002 // astrocyte development // not recorded /// 0014044 // Schwann cell development // not recorded /// 0014044 // Schwann cell development // inferred from electronic annotation /// 0021799 // cerebral cortex radially oriented cell migration // inferred from electronic annotation /// 0021799 // cerebral cortex radially oriented cell migration // not recorded /// 0021869 // forebrain ventricular zone progenitor cell division // inferred from electronic annotation /// 0021869 // forebrain ventricular zone progenitor cell division // not recorded /// 0021979 // hypothalamus cell differentiation // inferred from electronic annotation /// 0021979 // hypothalamus cell differentiation // not recorded /// 0021985 // neurohypophysis development // inferred from electronic annotation /// 0021985 // neurohypophysis development // not recorded /// 0022011 // myelination in peripheral nervous system // inferred from electronic annotation /// 0022011 // myelination in peripheral nervous system // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0050770 // regulation of axonogenesis // inferred from electronic annotation /// 0050770 // regulation of axonogenesis // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1371062_at L34821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L34821.1 /DB_XREF=gi:556394 /GEN=SSADH /FEA=mRNA /CNT=4 /TID=Rn.10070.1 /TIER=ConsEnd /STK=0 /UG=Rn.10070 /LL=29505 /DEF=Rat succinate-semialdehyde dehydrogenase (SSADH) mRNA, 3 end. /PROD=succinate semialdehyde dehydrogenase L34821 aldehyde dehydrogenase 5 family, member A1 Aldh5a1 291133 XM_001062926 /// XM_214478 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006083 // acetate metabolic process // inferred from electronic annotation /// 0006083 // acetate metabolic process // not recorded /// 0006105 // succinate metabolic process // inferred from direct assay /// 0006105 // succinate metabolic process // not recorded /// 0006105 // succinate metabolic process // inferred from electronic annotation /// 0006536 // glutamate metabolic process // inferred from electronic annotation /// 0006536 // glutamate metabolic process // not recorded /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0006541 // glutamine metabolic process // not recorded /// 0006650 // glycerophospholipid metabolic process // inferred from electronic annotation /// 0006650 // glycerophospholipid metabolic process // not recorded /// 0006678 // glucosylceramide metabolic process // inferred from electronic annotation /// 0006678 // glucosylceramide metabolic process // not recorded /// 0006681 // galactosylceramide metabolic process // inferred from electronic annotation /// 0006681 // galactosylceramide metabolic process // not recorded /// 0006749 // glutathione metabolic process // inferred from electronic annotation /// 0006749 // glutathione metabolic process // not recorded /// 0007417 // central nervous system development // not recorded /// 0007417 // central nervous system development // inferred from sequence or structural similarity /// 0007417 // central nervous system development // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009448 // gamma-aminobutyric acid metabolic process // not recorded /// 0009448 // gamma-aminobutyric acid metabolic process // inferred from electronic annotation /// 0009450 // gamma-aminobutyric acid catabolic process // not recorded /// 0009450 // gamma-aminobutyric acid catabolic process // inferred from sequence or structural similarity /// 0009450 // gamma-aminobutyric acid catabolic process // traceable author statement /// 0009450 // gamma-aminobutyric acid catabolic process // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0022904 // respiratory electron transport chain // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // not recorded /// 0042135 // neurotransmitter catabolic process // inferred from electronic annotation /// 0042135 // neurotransmitter catabolic process // not recorded /// 0046459 // short-chain fatty acid metabolic process // inferred from electronic annotation /// 0046459 // short-chain fatty acid metabolic process // not recorded /// 0051289 // protein homotetramerization // not recorded /// 0055114 // oxidation reduction // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005625 // soluble fraction // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation 0004777 // succinate-semialdehyde dehydrogenase activity // inferred from direct assay /// 0004777 // succinate-semialdehyde dehydrogenase activity // not recorded /// 0004777 // succinate-semialdehyde dehydrogenase activity // inferred from sequence or structural similarity /// 0004777 // succinate-semialdehyde dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016620 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0031406 // carboxylic acid binding // inferred from physical interaction /// 0051287 // NAD or NADH binding // inferred from direct assay 1371063_at AF009603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF009603.1 /DB_XREF=gi:2293467 /FEA=mRNA /CNT=4 /TID=Rn.10787.1 /TIER=ConsEnd /STK=0 /UG=Rn.10787 /LL=116743 /UG_GENE=Sh3d2a /DEF=Rattus norvegicus SH3p4 mRNA, partial cds. /PROD=SH3p4 AF009603 SH3-domain GRB2-like 2 Sh3gl2 116743 XM_001070855 /// XM_342857 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0006897 // endocytosis // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1371064_at U95920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U95920.1 /DB_XREF=gi:2078540 /GEN=PCM-1 /FEA=mRNA /CNT=4 /TID=Rn.19376.1 /TIER=ConsEnd /STK=0 /UG=Rn.19376 /LL=81740 /DEF=Rattus norvegicus pericentriolar material PCM-1 (PCM-1) mRNA, partial cds. /PROD=PCM-1 U95920 pericentriolar material 1 Pcm1 81740 NM_031076 0022027 // interkinetic nuclear migration // inferred from electronic annotation /// 0022027 // interkinetic nuclear migration // not recorded /// 0034453 // microtubule anchoring // inferred from electronic annotation /// 0034453 // microtubule anchoring // not recorded /// 0042384 // cilium assembly // inferred from electronic annotation /// 0042384 // cilium assembly // not recorded /// 0050768 // negative regulation of neurogenesis // inferred from electronic annotation /// 0050768 // negative regulation of neurogenesis // not recorded /// 0051297 // centrosome organization // inferred from electronic annotation /// 0051297 // centrosome organization // not recorded /// 0071539 // protein localization to centrosome // inferred from electronic annotation /// 0071539 // protein localization to centrosome // not recorded 0000242 // pericentriolar material // inferred from electronic annotation /// 0000242 // pericentriolar material // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0031513 // nonmotile primary cilium // not recorded /// 0034451 // centriolar satellite // inferred from electronic annotation /// 0034451 // centriolar satellite // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371065_at BM389513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389513 /DB_XREF=gi:18189566 /DB_XREF=UI-R-CN1-cjn-p-13-0-UI.s1 /CLONE=UI-R-CN1-cjn-p-13-0-UI /FEA=mRNA /CNT=4 /TID=Rn.34895.1 /TIER=ConsEnd /STK=0 /UG=Rn.34895 /UG_TITLE=Rattus norvegicus MHC class II antigen RT1.B beta chain mRNA, partial cds BM389513 similar to RT1 class II histocompatibility antigen, B-1 beta chain precursor (RT1.B-beta(1)) /// RT1 class II, locus Bb LOC688090 /// RT1-Bb 309622 /// 688090 NM_001004084 /// NM_001101017 0002504 // antigen processing and presentation of peptide or polysaccharide antigen via MHC class II // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0006955 // immune response // not recorded /// 0019882 // antigen processing and presentation // not recorded /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // not recorded /// 0048002 // antigen processing and presentation of peptide antigen // inferred from electronic annotation /// 0048002 // antigen processing and presentation of peptide antigen // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005769 // early endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005771 // multivesicular body // inferred from electronic annotation /// 0005771 // multivesicular body // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0042613 // MHC class II protein complex // inferred from electronic annotation /// 0042613 // MHC class II protein complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042605 // peptide antigen binding // inferred from electronic annotation /// 0042605 // peptide antigen binding // not recorded 1371066_at X89383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X89383.1 /DB_XREF=gi:1213223 /GEN=snrk /FEA=mRNA /CNT=3 /TID=Rn.10245.1 /TIER=ConsEnd /STK=0 /UG=Rn.10245 /LL=170837 /DEF=R.norvegicus mRNA for SNF1-related kinase. /PROD=SNF1-related kinase X89383 SNF related kinase Snrk 170837 NM_138833 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0043523 // regulation of neuron apoptosis // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371067_at Y09111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y09111.1 /DB_XREF=gi:1657401 /GEN=tMDC IV /FEA=mRNA /CNT=3 /TID=Rn.24189.1 /TIER=ConsEnd /STK=0 /UG=Rn.24189 /UG_TITLE=R.norvegicus mRNA for tMDC IV protein /DEF=R.norvegicus mRNA for tMDC IV protein. Y09111 a disintegrin and metallopeptidase domain 6 Adam6 192271 NM_138906 0006508 // proteolysis // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1371068_at AW524833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524833 /DB_XREF=gi:7167218 /DB_XREF=UI-R-BO0-ahy-g-11-0-UI.s1 /CLONE=UI-R-BO0-ahy-g-11-0-UI /FEA=mRNA /CNT=3 /TID=Rn.53941.1 /TIER=ConsEnd /STK=0 /UG=Rn.53941 /UG_TITLE=Rattus norvegicus cnr5 mRNA for cadherin-related neuronal receptor 5, partial cds AW524833 protocadherin alpha 13 Pcdha13 116742 NM_053934 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0042476 // odontogenesis // non-traceable author statement 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1371069_at AF184921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF184921.1 /DB_XREF=gi:6010762 /GEN=NRITP /FEA=mRNA /CNT=3 /TID=Rn.48738.1 /TIER=ConsEnd /STK=0 /UG=Rn.48738 /LL=64559 /DEF=Rattus norvegicus ion transporter protein (NRITP) mRNA, partial cds. /PROD=ion transporter protein AF184921 solute carrier family 22, member 23 Slc22a23 64559 NM_022624 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1371070_at AJ302054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ302054.1 /DB_XREF=gi:18076498 /GEN=Dlm-1 /FEA=mRNA /CNT=3 /TID=Rn.67419.1 /TIER=ConsEnd /STK=0 /UG=Rn.67419 /DEF=Rattus norvegicus partial mRNA for putative tumor stroma and activated macrophage protein DLM-1, (Dlm-1 gene). /PROD=putative tumor stroma and activated macrophageprotein DLM-1 AJ302054 Z-DNA binding protein 1 Zbp1 171091 XM_001054526 /// XM_342594 0003677 // DNA binding // inferred from electronic annotation /// 0003692 // left-handed Z-DNA binding // inferred from electronic annotation /// 0003692 // left-handed Z-DNA binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0003726 // double-stranded RNA adenosine deaminase activity // inferred from electronic annotation 1371071_at BI284800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284800 /DB_XREF=gi:14937803 /DB_XREF=UI-R-CX0s-ccs-d-02-0-UI.s1 /CLONE=UI-R-CX0s-ccs-d-02-0-UI /FEA=mRNA /CNT=3 /TID=Rn.10844.1 /TIER=ConsEnd /STK=0 /UG=Rn.10844 /UG_TITLE=Rattus norvegicus guanine nucleotide binding protein beta 4 subunit mRNA, partial cds BI284800 guanine nucleotide binding protein (G protein), beta polypeptide 4 Gnb4 294962 NM_001013910 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0050909 // sensory perception of taste // inferred from electronic annotation 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation 0003924 // GTPase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation 1371072_at AF228043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF228043.1 /DB_XREF=gi:8568072 /FEA=mRNA /CNT=3 /TID=Rn.54003.1 /TIER=ConsEnd /STK=0 /UG=Rn.54003 /DEF=Rattus norvegicus nuclear hormone receptor co-regulatorco-activator mRNA, partial cds. /PROD=nuclear hormone receptorco-regulatorco-activator AF228043 nuclear receptor coactivator 6 Ncoa6 116464 XM_001064189 /// XM_342552 0006350 // transcription // inferred from electronic annotation /// 0006352 // transcription initiation // not recorded /// 0006352 // transcription initiation // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0030099 // myeloid cell differentiation // not recorded /// 0030099 // myeloid cell differentiation // inferred from sequence or structural similarity /// 0030099 // myeloid cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060716 // labyrinthine layer blood vessel development // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // not recorded /// 0035097 // histone methyltransferase complex // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003713 // transcription coactivator activity // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from direct assay /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from electronic annotation /// 0046966 // thyroid hormone receptor binding // not recorded /// 0046966 // thyroid hormone receptor binding // inferred from sequence or structural similarity /// 0046966 // thyroid hormone receptor binding // inferred from electronic annotation 1371073_at BI286141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286141 /DB_XREF=gi:14940493 /DB_XREF=UI-R-DE0-cah-b-12-0-UI.s1 /CLONE=UI-R-DE0-cah-b-12-0-UI /FEA=mRNA /CNT=5 /TID=Rn.22321.1 /TIER=ConsEnd /STK=0 /UG=Rn.22321 /LL=24390 /UG_GENE=B4galt1 /UG_TITLE=Glycoprotein-4-beta-galactosyltransferase 2 BI286141 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 B4galt1 24390 NM_053287 0002064 // epithelial cell development // inferred from electronic annotation /// 0002064 // epithelial cell development // not recorded /// 0002526 // acute inflammatory response // inferred from electronic annotation /// 0002526 // acute inflammatory response // not recorded /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005989 // lactose biosynthetic process // inferred from electronic annotation /// 0005989 // lactose biosynthetic process // not recorded /// 0006012 // galactose metabolic process // inferred from electronic annotation /// 0006012 // galactose metabolic process // not recorded /// 0006496 // protein amino acid terminal N-glycosylation // inferred from electronic annotation /// 0006496 // protein amino acid terminal N-glycosylation // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation /// 0007339 // binding of sperm to zona pellucida // not recorded /// 0007341 // penetration of zona pellucida // inferred from electronic annotation /// 0007341 // penetration of zona pellucida // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009101 // glycoprotein biosynthetic process // inferred from electronic annotation /// 0009101 // glycoprotein biosynthetic process // not recorded /// 0009312 // oligosaccharide biosynthetic process // not recorded /// 0009312 // oligosaccharide biosynthetic process // traceable author statement /// 0009312 // oligosaccharide biosynthetic process // inferred from electronic annotation /// 0009611 // response to wounding // inferred from expression pattern /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0030879 // mammary gland development // not recorded /// 0042060 // wound healing // not recorded /// 0042060 // wound healing // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0045136 // development of secondary sexual characteristics // inferred from electronic annotation /// 0045136 // development of secondary sexual characteristics // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // not recorded /// 0050900 // leukocyte migration // inferred from electronic annotation /// 0050900 // leukocyte migration // not recorded /// 0051270 // regulation of cellular component movement // inferred from electronic annotation /// 0051270 // regulation of cellular component movement // not recorded /// 0060046 // regulation of acrosome reaction // inferred from electronic annotation /// 0060046 // regulation of acrosome reaction // not recorded /// 0060054 // positive regulation of epithelial cell proliferation involved in wound healing // inferred from electronic annotation /// 0060054 // positive regulation of epithelial cell proliferation involved in wound healing // not recorded /// 0060055 // angiogenesis involved in wound healing // inferred from electronic annotation /// 0060055 // angiogenesis involved in wound healing // not recorded /// 0060058 // positive regulation of apoptosis involved in mammary gland involution // inferred from electronic annotation /// 0060058 // positive regulation of apoptosis involved in mammary gland involution // not recorded 0000138 // Golgi trans cisterna // inferred from electronic annotation /// 0000138 // Golgi trans cisterna // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0030057 // desmosome // inferred from electronic annotation /// 0030057 // desmosome // not recorded /// 0030112 // glycocalyx // inferred from electronic annotation /// 0030112 // glycocalyx // not recorded /// 0031526 // brush border membrane // inferred from electronic annotation /// 0031526 // brush border membrane // not recorded /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0003831 // beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity // inferred from electronic annotation /// 0003831 // beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity // not recorded /// 0003945 // N-acetyllactosamine synthase activity // inferred from electronic annotation /// 0003945 // N-acetyllactosamine synthase activity // not recorded /// 0004461 // lactose synthase activity // inferred from electronic annotation /// 0004461 // lactose synthase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // not recorded /// 0008378 // galactosyltransferase activity // not recorded /// 0008378 // galactosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0035250 // UDP-galactosyltransferase activity // not recorded /// 0035250 // UDP-galactosyltransferase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043014 // alpha-tubulin binding // inferred from electronic annotation /// 0043014 // alpha-tubulin binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // not recorded 1371074_a_at U17565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U17565.1 /DB_XREF=gi:3169698 /FEA=mRNA /CNT=3 /TID=Rn.33226.1 /TIER=ConsEnd /STK=0 /UG=Rn.33226 /LL=29685 /UG_GENE=Mcmd6 /DEF=Rattus norvegicus intestinal DNA replication protein mRNA, partial cds. /PROD=intestinal DNA replication protein U17565 minichromosome maintenance complex component 6 Mcm6 29685 NM_017287 0006260 // DNA replication // not recorded /// 0006260 // DNA replication // inferred from electronic annotation /// 0006268 // DNA unwinding involved in replication // not recorded /// 0006268 // DNA unwinding involved in replication // inferred from electronic annotation /// 0006270 // DNA-dependent DNA replication initiation // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003678 // DNA helicase activity // not recorded /// 0003678 // DNA helicase activity // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // not recorded /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation 1371075_at AF075250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF075250.1 /DB_XREF=gi:3978263 /GEN=MHCEO /FEA=mRNA /CNT=5 /TID=Rn.34319.1 /TIER=ConsEnd /STK=3 /UG=Rn.34319 /LL=29605 /DEF=Rattus norvegicus myosin heavy chain (MHCEO) mRNA, partial cds. /PROD=myosin heavy chain AF075250 myosin, heavy chain 13, skeletal muscle Myh13 29605 XM_001078857 /// XM_001080189 0016459 // myosin complex // inferred from electronic annotation 0003774 // motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1371076_at AI454613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454613 /DB_XREF=gi:4294951 /DB_XREF=UI-R-A0-aq-h-01-0-UI.s1 /CLONE=UI-R-A0-aq-h-01-0-UI /FEA=mRNA /CNT=11 /TID=Rn.2287.2 /TIER=ConsEnd /STK=2 /UG=Rn.2287 /LL=29295 /UG_GENE=Cyp2b15 /UG_TITLE=cytochrome P450, 2b19 AI454613 cytochrome P450, family 2, subfamily b, polypeptide 1 /// cytochrome P450, family 2, subfamily b, polypeptide 2 Cyp2b1 /// Cyp2b2 24300 /// 361523 NM_001134844 /// NM_001198676 /// XM_001062335 /// XM_001070953 0007568 // aging // inferred from expression pattern /// 0008202 // steroid metabolic process // not recorded /// 0010038 // response to metal ion // inferred from expression pattern /// 0010477 // response to sulfur dioxide // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0017144 // drug metabolic process // inferred from direct assay /// 0017144 // drug metabolic process // not recorded /// 0017144 // drug metabolic process // traceable author statement /// 0018933 // nicotine metabolic process // inferred from expression pattern /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0042180 // cellular ketone metabolic process // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042738 // exogenous drug catabolic process // not recorded /// 0051592 // response to calcium ion // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004497 // monooxygenase activity // not recorded /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008395 // steroid hydroxylase activity // inferred from direct assay /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0019825 // oxygen binding // not recorded /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1371077_at AI575989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575989 /DB_XREF=gi:4560365 /DB_XREF=UI-R-G0-ur-c-10-0-UI.s2 /CLONE=UI-R-G0-ur-c-10-0-UI /FEA=mRNA /CNT=4 /TID=Rn.54002.2 /TIER=ConsEnd /STK=2 /UG=Rn.54002 /LL=58963 /UG_GENE=Htr3b /UG_TITLE=5-hydroxytryptamine (serotonin) receptor 3B AI575989 5-hydroxytryptamine (serotonin) receptor 3b Htr3b 58963 NM_022189 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0007165 // signal transduction // not recorded /// 0007210 // serotonin receptor signaling pathway // inferred from electronic annotation /// 0007210 // serotonin receptor signaling pathway // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // inferred from direct assay /// 0004993 // serotonin receptor activity // not recorded /// 0004993 // serotonin receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005232 // serotonin-activated cation-selective channel activity // inferred from electronic annotation /// 0005232 // serotonin-activated cation-selective channel activity // not recorded 1371078_at AI500830 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI500830 /DB_XREF=gi:4398681 /DB_XREF=UI-R-C2p-rq-g-01-0-UI.s1 /CLONE=UI-R-C2p-rq-g-01-0-UI /FEA=mRNA /CNT=3 /TID=Rn.81064.1 /TIER=ConsEnd /STK=2 /UG=Rn.81064 /UG_TITLE=R.norvegicus 113R mRNA for class I MHC molecule AI500830 RT1 class Ib, locus EC2 RT1-EC2 24737 NM_012645 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 1371079_at X73371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X73371.1 /DB_XREF=gi:397576 /FEA=mRNA /CNT=3 /TID=Rn.33323.1 /TIER=ConsEnd /STK=2 /UG=Rn.33323 /DEF=R.norvegicus mRNA for Fc gamma receptor. /PROD=Fc gamma receptor type 2 X73371 Fc fragment of IgG, low affinity IIa, receptor (CD32) /// Fc fragment of IgG, low affinity IIb, receptor (CD32) Fcgr2a /// Fcgr2b 116591 /// 289211 NM_053843 /// NM_175756 0001788 // antibody-dependent cellular cytotoxicity // not recorded /// 0001798 // positive regulation of type IIa hypersensitivity // not recorded /// 0001805 // positive regulation of type III hypersensitivity // not recorded /// 0001811 // negative regulation of type I hypersensitivity // not recorded /// 0001812 // positive regulation of type I hypersensitivity // not recorded /// 0001820 // serotonin secretion // not recorded /// 0002638 // negative regulation of immunoglobulin production // not recorded /// 0002862 // negative regulation of inflammatory response to antigenic stimulus // not recorded /// 0002865 // negative regulation of acute inflammatory response to antigenic stimulus // not recorded /// 0002924 // negative regulation of humoral immune response mediated by circulating immunoglobulin // not recorded /// 0006910 // phagocytosis, recognition // not recorded /// 0006911 // phagocytosis, engulfment // not recorded /// 0006952 // defense response // not recorded /// 0006955 // immune response // not recorded /// 0007165 // signal transduction // not recorded /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0009617 // response to bacterium // not recorded /// 0016064 // immunoglobulin mediated immune response // not recorded /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // not recorded /// 0021675 // nerve development // inferred from expression pattern /// 0030593 // neutrophil chemotaxis // not recorded /// 0030889 // negative regulation of B cell proliferation // not recorded /// 0032693 // negative regulation of interleukin-10 production // not recorded /// 0042535 // positive regulation of tumor necrosis factor biosynthetic process // not recorded /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // not recorded /// 0045576 // mast cell activation // not recorded /// 0050765 // negative regulation of phagocytosis // not recorded /// 0050766 // positive regulation of phagocytosis // not recorded /// 0050776 // regulation of immune response // not recorded /// 0050777 // negative regulation of immune response // not recorded /// 0071219 // cellular response to molecule of bacterial origin // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019770 // IgG receptor activity // inferred from direct assay /// 0019770 // IgG receptor activity // not recorded /// 0019864 // IgG binding // not recorded /// 0019864 // IgG binding // inferred from electronic annotation 1371080_at AI169562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169562 /DB_XREF=gi:3709602 /DB_XREF=EST215440 /CLONE=RKIBU50 /FEA=mRNA /CNT=3 /TID=Rn.21391.1 /TIER=ConsEnd /STK=2 /UG=Rn.21391 /UG_TITLE=Rattus norvegicus (clone K-32) kallikrein mRNA, 3 end AI169562 T-kininogenase Klk1c10 292858 NM_001135173 0006508 // proteolysis // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1371081_at U78517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U78517.1 /DB_XREF=gi:4115910 /GEN=cAMP-GEFII /FEA=mRNA /CNT=3 /TID=Rn.42890.1 /TIER=ConsEnd /STK=2 /UG=Rn.42890 /DEF=Rattus norvegicus cAMP-regulated guanine nucleotide exchange factor II (cAMP-GEFII) mRNA, partial cds. /PROD=cAMP-regulated guanine nucleotide exchangefactor II U78517 Rap guanine nucleotide exchange factor (GEF) 4 Rapgef4 252857 XM_001060956 /// XM_002726175 /// XM_002729173 /// XM_215985 0001932 // regulation of protein phosphorylation // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007507 // heart development // inferred from expression pattern /// 0014911 // positive regulation of smooth muscle cell migration // inferred from direct assay /// 0017156 // calcium ion-dependent exocytosis // inferred from electronic annotation /// 0017156 // calcium ion-dependent exocytosis // not recorded /// 0017157 // regulation of exocytosis // inferred from electronic annotation /// 0017157 // regulation of exocytosis // not recorded /// 0019933 // cAMP-mediated signaling // inferred from electronic annotation /// 0019933 // cAMP-mediated signaling // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030073 // insulin secretion // inferred from electronic annotation /// 0030073 // insulin secretion // not recorded /// 0050773 // regulation of dendrite development // inferred from mutant phenotype /// 0050790 // regulation of catalytic activity // not recorded /// 0050805 // negative regulation of synaptic transmission // inferred from direct assay /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0001750 // photoreceptor outer segment // inferred from direct assay /// 0001917 // photoreceptor inner segment // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005952 // cAMP-dependent protein kinase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0060076 // excitatory synapse // inferred from direct assay 0005085 // guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005088 // Ras guanyl-nucleotide exchange factor activity // not recorded /// 0005088 // Ras guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0005088 // Ras guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from electronic annotation /// 0017016 // Ras GTPase binding // not recorded /// 0017016 // Ras GTPase binding // inferred from sequence or structural similarity /// 0017016 // Ras GTPase binding // inferred from electronic annotation /// 0030552 // cAMP binding // inferred from direct assay /// 0030552 // cAMP binding // not recorded /// 0030552 // cAMP binding // inferred from sequence or structural similarity /// 0030552 // cAMP binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay 1371082_at AI112106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112106 /DB_XREF=gi:3512055 /DB_XREF=UI-R-Y0-mo-f-03-0-UI.s1 /CLONE=UI-R-Y0-mo-f-03-0-UI /FEA=mRNA /CNT=2 /TID=Rn.26718.1 /TIER=ConsEnd /STK=2 /UG=Rn.26718 /LL=171107 /UG_GENE=Arr3 /UG_TITLE=arrestin 3, retinal (X-arrestin) AI112106 arrestin 3, retinal (X-arrestin) Arr3 171107 NM_001190993 /// XM_001053467 /// XM_001069667 /// XM_002727576 /// XM_002730255 0001932 // regulation of protein phosphorylation // inferred from electronic annotation /// 0001932 // regulation of protein phosphorylation // not recorded /// 0006897 // endocytosis // inferred from electronic annotation /// 0006897 // endocytosis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007600 // sensory perception // inferred from electronic annotation /// 0007601 // visual perception // inferred from expression pattern /// 0007601 // visual perception // inferred from electronic annotation /// 0009968 // negative regulation of signal transduction // traceable author statement /// 0050896 // response to stimulus // inferred from electronic annotation 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0001750 // photoreceptor outer segment // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0002046 // opsin binding // inferred from electronic annotation /// 0002046 // opsin binding // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0051219 // phosphoprotein binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // not recorded 1371083_at D00752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D00752.1 /DB_XREF=gi:220699 /FEA=mRNA /CNT=6 /TID=Rn.34396.3 /TIER=ConsEnd /STK=1 /UG=Rn.34396 /LL=24794 /UG_GENE=Spin2b /DEF=Rat mRNA for contrapsin-like protease inhibitor related protein (CPi-23). /PROD=contrapsin-like protease inhibitor relatedprotein (CPi-23) D00752 Serine protease inhibitor LOC299282 299282 NM_182474 0005576 // extracellular region // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1371084_at BI279353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279353 /DB_XREF=gi:14927088 /DB_XREF=UI-R-DA0-byn-d-05-0-UI.s1 /CLONE=UI-R-DA0-byn-d-05-0-UI /FEA=mRNA /CNT=4 /TID=Rn.32042.1 /TIER=ConsEnd /STK=1 /UG=Rn.32042 /UG_TITLE=Rattus norvegicus (clone RSKG50) kallikrein mRNA, 3 end BI279353 kallikrein 1-related peptidase c10-like 2 Klk1c10l2 292872 XM_002725575 /// XM_002728758 0006508 // proteolysis // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1371085_at AB046449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB046449.1 /DB_XREF=gi:18249652 /GEN=sgn-1 /FEA=mRNA /CNT=3 /TID=Rn.19594.1 /TIER=ConsEnd /STK=1 /UG=Rn.19594 /DEF=Rattus norvegicus mRNA for putative bHLH transcription factor, partial cds. /PROD=putative bHLH transcription factor AB046449 achaete-scute complex homolog 3 (Drosophila) Ascl3 246301 XM_344947 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded 1371086_at BE096879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096879 /DB_XREF=gi:8487810 /DB_XREF=UI-R-BO1-app-g-05-0-UI.s1 /CLONE=UI-R-BO1-app-g-05-0-UI /FEA=mRNA /CNT=2 /TID=Rn.11354.4 /TIER=ConsEnd /STK=1 /UG=Rn.11354 /LL=29588 /UG_GENE=Pou3f2 /UG_TITLE=POU domain, class 3, transcription factor 2 BE096879 protein tyrosine phosphatase, receptor type, F Ptprf 360406 NM_019249 0001960 // negative regulation of cytokine-mediated signaling pathway // inferred from mutant phenotype /// 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from direct assay /// 0007399 // nervous system development // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0031345 // negative regulation of cell projection organization // inferred from mutant phenotype /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // inferred from direct assay /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from mutant phenotype /// 0050775 // positive regulation of dendrite morphogenesis // inferred from mutant phenotype /// 0050803 // regulation of synapse structure and activity // inferred from mutant phenotype /// 0051387 // negative regulation of nerve growth factor receptor signaling pathway // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030426 // growth cone // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0060076 // excitatory synapse // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // inferred from sequence or structural similarity /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005001 // transmembrane receptor protein tyrosine phosphatase activity // inferred from direct assay /// 0005158 // insulin receptor binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0030971 // receptor tyrosine kinase binding // inferred from physical interaction /// 0042301 // phosphate binding // inferred from direct assay 1371087_a_at AJ002556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ002556.1 /DB_XREF=gi:3287264 /FEA=mRNA /CNT=2 /TID=Rn.37490.2 /TIER=ConsEnd /STK=1 /UG=Rn.37490 /LL=29457 /UG_GENE=Mtap6 /DEF=Rattus norvegicus mRNA for STOP protein. /PROD=E-STOP protein AJ002556 microtubule-associated protein 6 Map6 29457 NM_017204 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0005516 // calmodulin binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded 1371088_at AI716980 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716980 /DB_XREF=gi:5034236 /DB_XREF=UI-R-Y0-acl-e-06-0-UI.s1 /CLONE=UI-R-Y0-acl-e-06-0-UI /FEA=mRNA /CNT=2 /TID=Rn.10804.1 /TIER=ConsEnd /STK=1 /UG=Rn.10804 /LL=116694 /UG_GENE=Capn9 /UG_TITLE=calpain 9 (nCL-4) AI716980 calpain 9 Capn9 116694 XM_001054278 /// XM_002728605 /// XM_341719 0006508 // proteolysis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // traceable author statement /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1371089_at AA945082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945082 /DB_XREF=gi:3104998 /DB_XREF=EST200581 /CLONE=RLIAG27 /FEA=mRNA /CNT=2 /TID=Rn.40574.2 /TIER=ConsEnd /STK=1 /UG=Rn.40574 /LL=24422 /UG_GENE=Gsta2 /UG_TITLE=Glutathione-S-transferase, alpha type (Yc?) AA945082 glutathione S-transferase Yc2 subunit Gsta5 494500 NM_001009920 /// NM_001159739 0001657 // ureteric bud development // not recorded /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0042178 // xenobiotic catabolic process // inferred from direct assay /// 0042493 // response to drug // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005640 // nuclear outer membrane // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0004364 // glutathione transferase activity // inferred from direct assay /// 0004364 // glutathione transferase activity // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0043295 // glutathione binding // inferred from direct assay 1371090_at BM387006 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387006 /DB_XREF=gi:18187059 /DB_XREF=UI-R-CN1-cji-k-21-0-UI.s1 /CLONE=UI-R-CN1-cji-k-21-0-UI /FEA=mRNA /CNT=2 /TID=Rn.64509.1 /TIER=ConsEnd /STK=1 /UG=Rn.64509 /LL=65168 /UG_GENE=Scamp2 /UG_TITLE=secretory carrier membrane protein 2 BM387006 secretory carrier membrane protein 2 Scamp2 65168 NM_023955 0006886 // intracellular protein transport // traceable author statement /// 0006897 // endocytosis // traceable author statement /// 0015031 // protein transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation 0005794 // Golgi apparatus // not recorded /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from direct assay /// 0032588 // trans-Golgi network membrane // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0055038 // recycling endosome membrane // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008565 // protein transporter activity // traceable author statement 1371091_at BE118080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118080 /DB_XREF=gi:8510185 /DB_XREF=UI-R-BS1-azn-d-12-0-UI.s1 /CLONE=UI-R-BS1-azn-d-12-0-UI /FEA=mRNA /CNT=2 /TID=Rn.10718.1 /TIER=ConsEnd /STK=1 /UG=Rn.10718 /UG_TITLE=Rattus norvegicus unknown protein mRNA, partial cds BE118080 insulin receptor substrate 2 Irs2 29376 NM_001168633 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002903 // negative regulation of B cell apoptosis // not recorded /// 0002903 // negative regulation of B cell apoptosis // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // inferred from direct assay /// 0008286 // insulin receptor signaling pathway // inferred from mutant phenotype /// 0008286 // insulin receptor signaling pathway // not recorded /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0009749 // response to glucose stimulus // not recorded /// 0009749 // response to glucose stimulus // inferred from electronic annotation /// 0010748 // negative regulation of plasma membrane long-chain fatty acid transport // not recorded /// 0010748 // negative regulation of plasma membrane long-chain fatty acid transport // inferred from electronic annotation /// 0010907 // positive regulation of glucose metabolic process // not recorded /// 0010907 // positive regulation of glucose metabolic process // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030879 // mammary gland development // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // not recorded /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0032000 // positive regulation of fatty acid beta-oxidation // not recorded /// 0032000 // positive regulation of fatty acid beta-oxidation // inferred from electronic annotation /// 0032024 // positive regulation of insulin secretion // not recorded /// 0032024 // positive regulation of insulin secretion // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0033673 // negative regulation of kinase activity // not recorded /// 0033673 // negative regulation of kinase activity // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0045725 // positive regulation of glycogen biosynthetic process // not recorded /// 0045725 // positive regulation of glycogen biosynthetic process // inferred from electronic annotation /// 0046326 // positive regulation of glucose import // not recorded /// 0046326 // positive regulation of glucose import // inferred from electronic annotation 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005158 // insulin receptor binding // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0043548 // phosphoinositide 3-kinase binding // inferred from mutant phenotype /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction 1371092_at X15679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X15679.1 /DB_XREF=gi:56813 /FEA=mRNA /CNT=2 /TID=Rn.10387.1 /TIER=ConsEnd /STK=1 /UG=Rn.10387 /DEF=Rat mRNA for preprotrypsinogen IV (EC 3.4.21.4). /PROD=preprotrypsinogen IV (AA -15 to 232) X15679 preprotrypsinogen IV LOC286960 286960 NM_173301 0006508 // proteolysis // inferred from electronic annotation /// 0007586 // digestion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371093_at BF405311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405311 /DB_XREF=gi:11393286 /DB_XREF=UI-R-CA1-biw-k-11-0-UI.s1 /CLONE=UI-R-CA1-biw-k-11-0-UI /FEA=mRNA /CNT=2 /TID=Rn.71317.1 /TIER=ConsEnd /STK=1 /UG=Rn.71317 /LL=117521 /UG_GENE=Znf291 /UG_TITLE=zinc finger protein 291 BF405311 S-phase cyclin A-associated protein in the ER Scaper 117521 XM_001070332 /// XM_343394 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1371094_at L06804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L06804.1 /DB_XREF=gi:205170 /FEA=mRNA /CNT=1 /TID=Rn.81063.1 /TIER=ConsEnd /STK=1 /UG=Rn.81063 /LL=117555 /UG_GENE=Lhx2 /UG_TITLE=LIM homeobox protein 2 /DEF=Rattus norvegicus LIM homeodomain protein (LH-2) mRNA sequence. L06804 LIM homeobox 2 Lhx2 296706 NM_001106571 0001843 // neural tube closure // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007498 // mesoderm development // inferred from electronic annotation /// 0007498 // mesoderm development // not recorded /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0021537 // telencephalon development // not recorded /// 0021537 // telencephalon development // inferred from electronic annotation /// 0021978 // telencephalon regionalization // inferred from electronic annotation /// 0021978 // telencephalon regionalization // not recorded /// 0030182 // neuron differentiation // inferred from expression pattern /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048646 // anatomical structure formation involved in morphogenesis // inferred from electronic annotation /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1371095_at AY035403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY035403.1 /DB_XREF=gi:19352208 /GEN=Krp3b /FEA=mRNA /CNT=1 /TID=Rn.82703.1 /TIER=ConsEnd /STK=1 /UG=Rn.82703 /DEF=Rattus norvegicus kinesin-related protein 3B (Krp3b) mRNA, partial cds. /PROD=kinesin-related protein 3B AY035403 kinesin family member 6 Kif6 171291 XM_001062736 /// XM_343524 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007286 // spermatid development // traceable author statement 0001673 // male germ cell nucleus // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1371096_at L24389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L24389.1 /DB_XREF=gi:1129066 /FEA=mRNA /CNT=1 /TID=Rn.10205.1 /TIER=ConsEnd /STK=1 /UG=Rn.10205 /UG_TITLE=Rattus norvegicus galactosyltransferase associated kinase (GTA) mRNA, 3UTR /DEF=Rattus norvegicus galactosyltransferase associated kinase (GTA) mRNA, 3UTR. L24389 1371097_at AF053092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF053092.1 /DB_XREF=gi:3366791 /FEA=mRNA /CNT=1 /TID=Rn.29992.1 /TIER=ConsEnd /STK=1 /UG=Rn.29992 /DEF=Rattus norvegicus polo-like kinase isoform mRNA, partial cds. /PROD=polo-like kinase isoform AF053092 0006468 // protein phosphorylation // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0042801 // polo kinase kinase activity // inferred from electronic annotation 1371098_a_at AA996755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996755 /DB_XREF=gi:4280519 /DB_XREF=UI-R-C0-hg-e-10-0-UI.s1 /CLONE=UI-R-C0-hg-e-10-0-UI /FEA=mRNA /CNT=5 /TID=Rn.7839.2 /TIER=ConsEnd /STK=0 /UG=Rn.7839 /LL=64459 /UG_GENE=Masp2 /UG_TITLE=MASP-2 protein AA996755 mannan-binding lectin serine peptidase 2 Masp2 64459 NM_172043 0001867 // complement activation, lectin pathway // not recorded /// 0001867 // complement activation, lectin pathway // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006956 // complement activation // non-traceable author statement /// 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation 1371099_at U07886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U07886.1 /DB_XREF=gi:469480 /FEA=mRNA /CNT=5 /TID=Rn.54456.1 /TIER=ConsEnd /STK=0 /UG=Rn.54456 /UG_TITLE=Rat mRNA for polymeric immunoglobulin receptor /DEF=Rattus norvegicus clone 15 polymeric immunoglobulin receptor mRNA, 3UTR microsatellite repeats. U07886 1371100_at AA859049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859049 /DB_XREF=gi:4229317 /DB_XREF=UI-R-A0-ak-d-11-0-UI.s2 /CLONE=UI-R-A0-ak-d-11-0-UI /FEA=mRNA /CNT=4 /TID=Rn.2549.1 /TIER=ConsEnd /STK=0 /UG=Rn.2549 /LL=24346 /UG_GENE=Es2 /UG_TITLE=Esterase 2 AA859049 esterase 1 /// microsomal carboxyesterase E1-like Es1 /// LOC100365275 100365275 /// 24346 NM_017004 /// XM_002725379 0008152 // metabolic process // not recorded 0005615 // extracellular space // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005792 // microsome // traceable author statement 0004091 // carboxylesterase activity // inferred from direct assay /// 0004091 // carboxylesterase activity // not recorded /// 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // not recorded 1371101_at AB073721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB073721.1 /DB_XREF=gi:16555902 /GEN=ryk /FEA=mRNA /CNT=4 /TID=Rn.11796.1 /TIER=ConsEnd /STK=0 /UG=Rn.11796 /DEF=Rattus norvegicus ryk mRNA for tyrosine kinase-related protein, partial cds. /PROD=tyrosine kinase-related protein AB073721 receptor-like tyrosine kinase Ryk 140585 NM_080402 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // not recorded /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0048843 // negative regulation of axon extension involved in axon guidance // not recorded /// 0048843 // negative regulation of axon extension involved in axon guidance // inferred from electronic annotation /// 0050919 // negative chemotaxis // not recorded /// 0050919 // negative chemotaxis // inferred from electronic annotation /// 0071679 // commissural neuron axon guidance // not recorded /// 0071679 // commissural neuron axon guidance // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0017147 // Wnt-protein binding // not recorded /// 0017147 // Wnt-protein binding // inferred from electronic annotation /// 0042813 // Wnt receptor activity // not recorded /// 0042813 // Wnt receptor activity // inferred from electronic annotation 1371102_x_at X05080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X05080.1 /DB_XREF=gi:56255 /FEA=mRNA /CNT=4 /TID=Rn.36966.2 /TIER=ConsEnd /STK=0 /UG=Rn.36966 /LL=24440 /UG_GENE=Hbb /UG_TITLE=Hemoglobin, beta /DEF=Rat mRNA for beta-globin. X05080 beta globin minor gene /// beta-globin LOC100134871 /// LOC689064 100134871 /// 689064 NM_001111269 /// NM_001113223 0006749 // glutathione metabolic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0015671 // oxygen transport // inferred from direct assay /// 0015671 // oxygen transport // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from direct assay 0005833 // hemoglobin complex // inferred from direct assay /// 0005833 // hemoglobin complex // inferred from electronic annotation 0005344 // oxygen transporter activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0019825 // oxygen binding // inferred from direct assay /// 0019825 // oxygen binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0031721 // hemoglobin alpha binding // inferred from direct assay /// 0031722 // hemoglobin beta binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1371103_at AA686757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA686757 /DB_XREF=gi:2673355 /DB_XREF=EST111238 /CLONE=RPNBS80 /FEA=mRNA /CNT=4 /TID=Rn.48781.1 /TIER=ConsEnd /STK=0 /UG=Rn.48781 /LL=84379 /UG_GENE=Rab6 /UG_TITLE=RAB6, member RAS oncogene family AA686757 RAB6A, member RAS oncogene family Rab6a 84379 NM_053366 0000042 // protein targeting to Golgi // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0018125 // peptidyl-cysteine methylation // not recorded /// 0032482 // Rab protein signal transduction // inferred by curator /// 0048193 // Golgi vesicle transport // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0001671 // ATPase activator activity // inferred from direct assay /// 0001671 // ATPase activator activity // inferred from mutant phenotype /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0051117 // ATPase binding // inferred from physical interaction 1371104_at AF286470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF286470.2 /DB_XREF=gi:12249194 /GEN=Srebf1 /FEA=mRNA /CNT=3 /TID=Rn.64572.1 /TIER=ConsEnd /STK=0 /UG=Rn.64572 /DEF=Rattus norvegicus strain SHROla ADD1SREBP-1c (Srebf1) mRNA, partial cds. /PROD=ADD1SREBP-1c AF286470 sterol regulatory element binding transcription factor 1 Srebf1 78968 XM_001075680 /// XM_213329 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0003062 // regulation of heart rate by chemical signal // inferred from electronic annotation /// 0003062 // regulation of heart rate by chemical signal // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from mutant phenotype /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // not recorded /// 0008610 // lipid biosynthetic process // traceable author statement /// 0009267 // cellular response to starvation // inferred from direct assay /// 0009267 // cellular response to starvation // not recorded /// 0009267 // cellular response to starvation // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from electronic annotation /// 0009749 // response to glucose stimulus // not recorded /// 0010867 // positive regulation of triglyceride biosynthetic process // inferred from electronic annotation /// 0010867 // positive regulation of triglyceride biosynthetic process // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019217 // regulation of fatty acid metabolic process // inferred from electronic annotation /// 0019217 // regulation of fatty acid metabolic process // not recorded /// 0030324 // lung development // inferred from expression pattern /// 0031065 // positive regulation of histone deacetylation // inferred from electronic annotation /// 0031065 // positive regulation of histone deacetylation // not recorded /// 0032094 // response to food // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0032868 // response to insulin stimulus // traceable author statement /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0033762 // response to glucagon stimulus // inferred from expression pattern /// 0033993 // response to lipid // inferred from expression pattern /// 0035104 // positive regulation of transcription via sterol regulatory element binding // inferred from electronic annotation /// 0035104 // positive regulation of transcription via sterol regulatory element binding // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045542 // positive regulation of cholesterol biosynthetic process // inferred from electronic annotation /// 0045542 // positive regulation of cholesterol biosynthetic process // not recorded /// 0045941 // positive regulation of transcription // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046676 // negative regulation of insulin secretion // inferred from electronic annotation /// 0046676 // negative regulation of insulin secretion // not recorded /// 0050796 // regulation of insulin secretion // not recorded /// 0050796 // regulation of insulin secretion // inferred from electronic annotation /// 0051591 // response to cAMP // inferred from expression pattern /// 0070542 // response to fatty acid // inferred from expression pattern 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0012507 // ER to Golgi transport vesicle membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003704 // specific RNA polymerase II transcription factor activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0032810 // sterol response element binding // not recorded /// 0032810 // sterol response element binding // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from direct assay 1371105_at BF564277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564277 /DB_XREF=gi:11674007 /DB_XREF=UI-R-C4-alm-a-09-0-UI.r1 /CLONE=UI-R-C4-alm-a-09-0-UI /FEA=mRNA /CNT=3 /TID=Rn.74263.1 /TIER=ConsEnd /STK=0 /UG=Rn.74263 /LL=114005 /UG_GENE=Epm2a /UG_TITLE=epilepsy, progressive myoclonic epilepsy, type 2 gene alpha BF564277 1371106_at AF003598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF003598.1 /DB_XREF=gi:2196783 /FEA=mRNA /CNT=3 /TID=Rn.10767.1 /TIER=ConsEnd /STK=0 /UG=Rn.10767 /LL=25713 /UG_GENE=Itgb7 /DEF=Rattus norvegicus integrin beta-7 subunit mRNA, partial cds. /PROD=integrin beta-7 subunit AF003598 integrin, beta 7 Itgb7 25713 NM_013171 0007155 // cell adhesion // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // traceable author statement /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation 0005615 // extracellular space // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0008305 // integrin complex // traceable author statement /// 0008305 // integrin complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0050839 // cell adhesion molecule binding // traceable author statement 1371107_a_at AJ277449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ277449.1 /DB_XREF=gi:13751178 /GEN=p63 /FEA=mRNA /CNT=3 /TID=Rn.42907.2 /TIER=ConsEnd /STK=0 /UG=Rn.42907 /LL=29472 /DEF=Rattus norvegicus mRNA for TA2 KET gamma protein (p63 gene). /PROD=TA2 KET gamma protein AJ277449 tumor protein p63 Tp63 246334 NM_001127339 /// NM_001127341 /// NM_001127342 /// NM_001127343 /// NM_001127344 /// NM_019221 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001302 // replicative cell aging // inferred from mutant phenotype /// 0001501 // skeletal system development // not recorded /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001736 // establishment of planar polarity // not recorded /// 0001736 // establishment of planar polarity // inferred from electronic annotation /// 0001738 // morphogenesis of a polarized epithelium // not recorded /// 0001738 // morphogenesis of a polarized epithelium // inferred from electronic annotation /// 0001942 // hair follicle development // not recorded /// 0001942 // hair follicle development // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002064 // epithelial cell development // not recorded /// 0002064 // epithelial cell development // inferred from electronic annotation /// 0002347 // response to tumor cell // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0007389 // pattern specification process // not recorded /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007499 // ectoderm and mesoderm interaction // not recorded /// 0007499 // ectoderm and mesoderm interaction // inferred from electronic annotation /// 0007569 // cell aging // not recorded /// 0007569 // cell aging // inferred from electronic annotation /// 0008544 // epidermis development // not recorded /// 0008544 // epidermis development // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // not recorded /// 0009954 // proximal/distal pattern formation // inferred from electronic annotation /// 0010259 // multicellular organismal aging // not recorded /// 0010259 // multicellular organismal aging // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // not recorded /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030850 // prostate gland development // not recorded /// 0030850 // prostate gland development // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030859 // polarized epithelial cell differentiation // not recorded /// 0030859 // polarized epithelial cell differentiation // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // not recorded /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0035121 // tail morphogenesis // not recorded /// 0035121 // tail morphogenesis // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043589 // skin morphogenesis // not recorded /// 0043589 // skin morphogenesis // inferred from electronic annotation /// 0043616 // keratinocyte proliferation // not recorded /// 0043616 // keratinocyte proliferation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045617 // negative regulation of keratinocyte differentiation // not recorded /// 0045617 // negative regulation of keratinocyte differentiation // inferred from electronic annotation /// 0045747 // positive regulation of Notch signaling pathway // not recorded /// 0045747 // positive regulation of Notch signaling pathway // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048485 // sympathetic nervous system development // not recorded /// 0048485 // sympathetic nervous system development // inferred from electronic annotation /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded /// 0048646 // anatomical structure formation involved in morphogenesis // inferred from electronic annotation /// 0048745 // smooth muscle tissue development // not recorded /// 0048745 // smooth muscle tissue development // inferred from electronic annotation /// 0048807 // female genitalia morphogenesis // not recorded /// 0048807 // female genitalia morphogenesis // inferred from electronic annotation /// 0051289 // protein homotetramerization // not recorded /// 0051289 // protein homotetramerization // inferred from electronic annotation /// 0051402 // neuron apoptosis // not recorded /// 0051402 // neuron apoptosis // inferred from electronic annotation /// 0060157 // urinary bladder development // not recorded /// 0060157 // urinary bladder development // inferred from electronic annotation /// 0060197 // cloacal septation // not recorded /// 0060197 // cloacal septation // inferred from electronic annotation /// 0060513 // prostatic bud formation // not recorded /// 0060513 // prostatic bud formation // inferred from electronic annotation /// 0060529 // squamous basal epithelial stem cell differentiation involved in prostate gland acinus development // not recorded /// 0060529 // squamous basal epithelial stem cell differentiation involved in prostate gland acinus development // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0019718 // rough microsome // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // not recorded /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371108_a_at M74494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M74494.1 /DB_XREF=gi:205629 /FEA=mRNA /CNT=3 /TID=Rn.2992.3 /TIER=ConsEnd /STK=0 /UG=Rn.2992 /LL=24211 /UG_GENE=Atp1a1 /DEF=Rat sodiumpotassium ATPase alpha-1 subunit truncated isoform mRNA, 3 end. /PROD=Na,K-ATPase alpha-1 subunit M74494 ATPase, Na+/K+ transporting, alpha 1 polypeptide Atp1a1 24211 NM_012504 0002026 // regulation of the force of heart contraction // not recorded /// 0006200 // ATP catabolic process // not recorded /// 0006200 // ATP catabolic process // traceable author statement /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from direct assay /// 0006813 // potassium ion transport // not recorded /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008217 // regulation of blood pressure // not recorded /// 0010107 // potassium ion import // inferred from direct assay /// 0015672 // monovalent inorganic cation transport // inferred from electronic annotation /// 0015988 // energy coupled proton transport, against electrochemical gradient // traceable author statement /// 0016311 // dephosphorylation // not recorded /// 0031947 // negative regulation of glucocorticoid biosynthetic process // not recorded /// 0042493 // response to drug // not recorded /// 0045822 // negative regulation of heart contraction // not recorded /// 0045823 // positive regulation of heart contraction // not recorded /// 0045989 // positive regulation of striated muscle contraction // not recorded /// 0071436 // sodium ion export // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005886 // plasma membrane // not recorded /// 0005890 // sodium:potassium-exchanging ATPase complex // inferred from direct assay /// 0005890 // sodium:potassium-exchanging ATPase complex // non-traceable author statement /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0042383 // sarcolemma // not recorded /// 0042470 // melanosome // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003869 // 4-nitrophenylphosphatase activity // not recorded /// 0005391 // sodium:potassium-exchanging ATPase activity // inferred from direct assay /// 0005391 // sodium:potassium-exchanging ATPase activity // not recorded /// 0005391 // sodium:potassium-exchanging ATPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0015077 // monovalent inorganic cation transmembrane transporter activity // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030955 // potassium ion binding // inferred from direct assay /// 0031402 // sodium ion binding // inferred from direct assay /// 0043531 // ADP binding // inferred from direct assay /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1371109_at AA819870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819870 /DB_XREF=gi:4228123 /DB_XREF=UI-R-A0-aq-a-05-0-UI.s1 /CLONE=UI-R-A0-aq-a-05-0-UI /FEA=mRNA /CNT=3 /TID=Rn.10152.1 /TIER=ConsEnd /STK=0 /UG=Rn.10152 /UG_TITLE=Rattus norvegicus complement C8 beta (C8b) mRNA, partial cds AA819870 complement component 8, beta polypeptide C8b 313421 NM_001191759 /// XM_001058539 /// XM_233250 0006957 // complement activation, alternative pathway // inferred from electronic annotation /// 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0019835 // cytolysis // inferred from direct assay /// 0019835 // cytolysis // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005579 // membrane attack complex // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay 0032403 // protein complex binding // inferred from direct assay 1371110_at AY035343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY035343.1 /DB_XREF=gi:14581684 /FEA=mRNA /CNT=2 /TID=Rn.69588.1 /TIER=ConsEnd /STK=0 /UG=Rn.69588 /UG_TITLE=Rattus norvegicus Mg1 mRNA, complete sequence /DEF=Rattus norvegicus Mg1 mRNA, complete sequence. AY035343 Mg1 protein LOC287004 287004 1371111_at X82669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X82669.1 /DB_XREF=gi:2909331 /GEN=RT1.Alu /FEA=mRNA /CNT=2 /TID=Rn.39743.9 /TIER=ConsEnd /STK=0 /UG=Rn.39743 /LL=24737 /DEF=R.norvegicus RT1.Au gene. /PROD=major histocompatibility complex class I X82669 RT1 class Ib, locus EC2 RT1-EC2 24737 NM_012645 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 1371112_at AJ299017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ299017.1 /DB_XREF=gi:10638069 /GEN=Ret /FEA=mRNA /CNT=2 /TID=Rn.44178.2 /TIER=ConsEnd /STK=0 /UG=Rn.44178 /LL=24716 /DEF=Rattus norvegicus mRNA for receptor tyrosine kinase (Ret gene), isoform RET9. /PROD=receptor tyrosine kinase AJ299017 ret proto-oncogene Ret 24716 NM_001110099 /// NM_012643 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000165 // MAPKKK cascade // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0001838 // embryonic epithelial tube formation // inferred from electronic annotation /// 0001838 // embryonic epithelial tube formation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0014042 // positive regulation of neuron maturation // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0042551 // neuron maturation // not recorded /// 0042551 // neuron maturation // inferred from electronic annotation /// 0048484 // enteric nervous system development // inferred from electronic annotation /// 0048484 // enteric nervous system development // not recorded /// 0060041 // retina development in camera-type eye // inferred from expression pattern /// 0060384 // innervation // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1371113_a_at M58040 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M58040.1 /DB_XREF=gi:207463 /GEN=transferrin receptor /FEA=mRNA /CNT=2 /TID=Rn.13151.1 /TIER=ConsEnd /STK=0 /UG=Rn.13151 /LL=64678 /DEF=Rat transferrin receptor mRNA, 3 end. /PROD=transferrin receptor M58040 transferrin receptor Tfrc 64678 NM_022712 0001666 // response to hypoxia // inferred from expression pattern /// 0006508 // proteolysis // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // not recorded /// 0006897 // endocytosis // inferred from electronic annotation /// 0006953 // acute-phase response // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010039 // response to iron ion // inferred from expression pattern /// 0010042 // response to manganese ion // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0046688 // response to copper ion // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0005905 // coated pit // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0042470 // melanosome // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070062 // extracellular vesicular exosome // not recorded /// 0070062 // extracellular vesicular exosome // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004998 // transferrin receptor activity // inferred from direct assay /// 0004998 // transferrin receptor activity // traceable author statement /// 0008233 // peptidase activity // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // inferred from physical interaction /// 0051087 // chaperone binding // inferred from physical interaction 1371114_at X87635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X87635.1 /DB_XREF=gi:854418 /GEN=rIRK3 /FEA=mRNA /CNT=2 /TID=Rn.10197.2 /TIER=ConsEnd /STK=0 /UG=Rn.10197 /LL=116649 /DEF=R.norvegicus mRNA for inwardly rectifying potassium channel. /PROD=inwardly rectifying potassium channel X87635 potassium inwardly-rectifying channel, subfamily J, member 4 Kcnj4 116649 NM_053870 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation 1371115_at D78610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D78610.1 /DB_XREF=gi:1228945 /FEA=mRNA /CNT=2 /TID=Rn.10766.1 /TIER=ConsEnd /STK=0 /UG=Rn.10766 /LL=114767 /UG_GENE=Ptpre /DEF=Rat mRNA for protein tyrosine phosphatase epsilon C, partial cds. /PROD=protein tyrosine phosphatase epsilon C D78610 protein tyrosine phosphatase, receptor type, E Ptpre 114767 NM_053767 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007185 // transmembrane receptor protein tyrosine phosphatase signaling pathway // inferred from electronic annotation /// 0007185 // transmembrane receptor protein tyrosine phosphatase signaling pathway // not recorded /// 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0033003 // regulation of mast cell activation // inferred from electronic annotation /// 0033003 // regulation of mast cell activation // not recorded /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from direct assay /// 0046627 // negative regulation of insulin receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // non-traceable author statement /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1371116_at AJ277423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ277423.1 /DB_XREF=gi:7688072 /GEN=masp-1 /FEA=mRNA /CNT=2 /TID=Rn.53988.1 /TIER=ConsEnd /STK=0 /UG=Rn.53988 /LL=64023 /DEF=Rattus norvegicus partial mRNA for mannose-binding protein associated serine protease-1 (masp-1 gene). /PROD=mannose-binding protein associated serineprotease-1 AJ277423 mannan-binding lectin serine peptidase 1 Masp1 64023 NM_022257 0001867 // complement activation, lectin pathway // not recorded /// 0001867 // complement activation, lectin pathway // inferred from sequence or structural similarity /// 0001867 // complement activation, lectin pathway // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006956 // complement activation // non-traceable author statement /// 0008152 // metabolic process // not recorded /// 0045087 // innate immune response // inferred from electronic annotation /// 0045916 // negative regulation of complement activation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from direct assay /// 0004252 // serine-type endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from physical interaction /// 0048306 // calcium-dependent protein binding // not recorded 1371117_at AJ131563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ131563.1 /DB_XREF=gi:11691852 /FEA=mRNA /CNT=2 /TID=Rn.50490.1 /TIER=ConsEnd /STK=0 /UG=Rn.50490 /DEF=Rattus norvegicus mRNA for metalloproteasedisintegrin, partial. /PROD=metalloproteasedisintegrin AJ131563 ADAM metallopeptidase domain 32 Adam32 361170 NM_001170582 /// XM_001060880 /// XM_001072010 0006508 // proteolysis // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1371118_a_at K02901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:K02901 /DB_XREF=gi:204692 /FEA=DNA_2 /CNT=1 /TID=Rn.10955.2 /TIER=ConsEnd /STK=0 /UG=Rn.10955 /LL=24487 /UG_GENE=Ighe /UG_TITLE=immunoglobulin heavy chain (epsilon polypeptide) /DEF=Rat Ig germline epsilon H-chain gene C-region, 3 end K02901 immunoglobulin heavy chain (epsilon polypeptide) Ighe 299351 0003823 // antigen binding // inferred from electronic annotation 1371119_at L40364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L40364.1 /DB_XREF=gi:992568 /FEA=mRNA /CNT=2 /TID=Rn.39743.10 /TIER=ConsEnd /STK=0 /UG=Rn.39743 /LL=24737 /UG_GENE=RT1Aw2 /UG_TITLE=RT1 class Ib gene /DEF=Rattus norvegicus MHC class I RT1.O type -149 processed pseudogene mRNA. L40364 MHC class I RT1.O type 149 processed pseudogene LOC360231 360231 NR_002597 1371120_s_at X69681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X69681.1 /DB_XREF=gi:288760 /GEN=BK-2 /FEA=mRNA /CNT=2 /TID=Rn.9845.1 /TIER=ConsEnd /STK=0 /UG=Rn.9845 /DEF=R.norvegicus mRNA for bradykinin receptor. /PROD=B2 Bradykinin receptor X69681 bradykinin receptor B2 Bdkrb2 25245 NM_173100 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0009651 // response to salt stress // inferred from electronic annotation /// 0009651 // response to salt stress // not recorded /// 0019233 // sensory perception of pain // traceable author statement /// 0033137 // negative regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033137 // negative regulation of peptidyl-serine phosphorylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0050482 // arachidonic acid secretion // inferred from electronic annotation /// 0050482 // arachidonic acid secretion // not recorded 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0002020 // protease binding // inferred from electronic annotation /// 0002020 // protease binding // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004947 // bradykinin receptor activity // inferred from direct assay /// 0004947 // bradykinin receptor activity // not recorded /// 0004947 // bradykinin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0031702 // type 1 angiotensin receptor binding // inferred from electronic annotation /// 0031702 // type 1 angiotensin receptor binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1371121_at AF077195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF077195.1 /DB_XREF=gi:3342173 /GEN=SERT-1 /FEA=mRNA /CNT=2 /TID=Rn.31754.1 /TIER=ConsEnd /STK=0 /UG=Rn.31754 /DEF=Rattus norvegicus Sertoli cell protein (SERT-1) mRNA, partial cds. /PROD=Sertoli cell protein AF077195 Sertoli cell protein 1 Sert1 246151 1371122_at AW140505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW140505 /DB_XREF=gi:6160251 /DB_XREF=EST290491 /CLONE=RGIAK02 /FEA=mRNA /CNT=2 /TID=Rn.32324.1 /TIER=ConsEnd /STK=0 /UG=Rn.32324 /UG_TITLE=Rattus norvegicus mRNA for TANK protein AW140505 TRAF family member-associated NFKB activator Tank 252961 NM_001164073 /// NM_145788 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1371123_x_at AJ243973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ243973.1 /DB_XREF=gi:5640120 /GEN=BM1 /FEA=mRNA /CNT=2 /TID=Rn.40130.3 /TIER=ConsEnd /STK=0 /UG=Rn.40130 /DEF=Rattus norvegicus partial mRNA for BM1k MHC class Ib antigen, strain SHR. /PROD=BM1k AJ243973 RT1 class Ib, locus S3 RT1-S3 294228 NM_001008886 0001916 // positive regulation of T cell mediated cytotoxicity // not recorded /// 0002489 // antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 1371124_a_at M11884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M11884.1 /DB_XREF=gi:205076 /FEA=mRNA /CNT=2 /TID=Rn.44576.2 /TIER=ConsEnd /STK=0 /UG=Rn.44576 /LL=25087 /UG_GENE=Kngk /UG_TITLE=K-kininogen, differential splicing leads to HMW Kngk /DEF=Rat low molecular weight (LMW) K-kininogen mRNA, partial cds. M11884 kininogen 2 Kng2 25087 NM_001102418 /// NM_012741 0001938 // positive regulation of endothelial cell proliferation // inferred from direct assay /// 0006953 // acute-phase response // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation /// 0042130 // negative regulation of T cell proliferation // inferred from direct assay /// 0042311 // vasodilation // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // inferred from direct assay /// 0043410 // positive regulation of MAPKKK cascade // inferred from direct assay /// 0045861 // negative regulation of proteolysis // inferred from direct assay /// 0048146 // positive regulation of fibroblast proliferation // inferred from direct assay /// 0050672 // negative regulation of lymphocyte proliferation // inferred from direct assay /// 0050880 // regulation of blood vessel size // inferred from electronic annotation /// 0052548 // regulation of endopeptidase activity // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from direct assay /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1371125_at BF564995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564995 /DB_XREF=gi:11674725 /DB_XREF=UI-R-BS0-amq-c-12-0-UI.r1 /CLONE=UI-R-BS0-amq-c-12-0-UI /FEA=mRNA /CNT=2 /TID=Rn.48704.1 /TIER=ConsEnd /STK=0 /UG=Rn.48704 /LL=84391 /UG_GENE=Kif2 /UG_TITLE=kinesin heavy chain member 2 BF564995 kinesin family member 2A Kif2a 84391 XM_001065116 /// XM_001065173 /// XM_002729004 /// XM_345150 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007052 // mitotic spindle organization // not recorded /// 0007052 // mitotic spindle organization // inferred from sequence or structural similarity /// 0007067 // mitosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000922 // spindle pole // not recorded /// 0000922 // spindle pole // inferred from sequence or structural similarity /// 0000922 // spindle pole // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded /// 0005876 // spindle microtubule // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1371126_x_at X66693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X66693.1 /DB_XREF=gi:296177 /FEA=mRNA /CNT=2 /TID=Rn.21395.1 /TIER=ConsEnd /STK=0 /UG=Rn.21395 /LL=171528 /UG_GENE=Gzmb /DEF=R.norvegicus mRNA for granzyme-like protein I. /PROD=granzyme-like protein I X66693 granzyme B /// rCG23560-like Gzmb /// LOC100361261 100361261 /// 171528 NM_138517 /// XM_002725086 /// XM_002728285 0006508 // proteolysis // inferred from electronic annotation /// 0010942 // positive regulation of cell death // inferred from mutant phenotype /// 0019835 // cytolysis // inferred from electronic annotation /// 0060555 // induction of necroptosis by extracellular signals // inferred from mutant phenotype 0005769 // early endosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1371127_at AB012139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB012139.1 /DB_XREF=gi:4519514 /FEA=mRNA /CNT=2 /TID=Rn.21363.1 /TIER=ConsEnd /STK=0 /UG=Rn.21363 /LL=83470 /UG_GENE=Bmp1 /DEF=Rattus norvegicus mRNA for procollagen C-proteinase 3, partial cds. /PROD=procollagen C-proteinase 3 AB012139 bone morphogenetic protein 1 Bmp1 83470 NM_031323 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0061036 // positive regulation of cartilage development // not recorded /// 0061036 // positive regulation of cartilage development // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0031988 // membrane-bounded vesicle // inferred from direct assay 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1371128_at X16058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X16058.2 /DB_XREF=gi:11140160 /GEN=IL-4 /FEA=mRNA /CNT=2 /TID=Rn.44213.1 /TIER=ConsEnd /STK=0 /UG=Rn.44213 /DEF=Rattus norvegicus mRNA for interleukin 4 (IL-4 gene). /PROD=interleukin 4 X16058 interleukin 4 Il4 287287 NM_201270 0002674 // negative regulation of acute inflammatory response // inferred from direct assay /// 0002677 // negative regulation of chronic inflammatory response // inferred from direct assay /// 0006954 // inflammatory response // non-traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0010155 // regulation of proton transport // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // not recorded /// 0032733 // positive regulation of interleukin-10 production // inferred from direct assay /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042104 // positive regulation of activated T cell proliferation // inferred from electronic annotation /// 0042104 // positive regulation of activated T cell proliferation // not recorded /// 0042113 // B cell activation // inferred from electronic annotation /// 0042325 // regulation of phosphorylation // inferred from electronic annotation /// 0042325 // regulation of phosphorylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042523 // positive regulation of tyrosine phosphorylation of Stat5 protein // inferred from electronic annotation /// 0042523 // positive regulation of tyrosine phosphorylation of Stat5 protein // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from direct assay /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0045019 // negative regulation of nitric oxide biosynthetic process // inferred from direct assay /// 0045348 // positive regulation of MHC class II biosynthetic process // inferred from electronic annotation /// 0045348 // positive regulation of MHC class II biosynthetic process // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0045671 // negative regulation of osteoclast differentiation // inferred from electronic annotation /// 0045671 // negative regulation of osteoclast differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048295 // positive regulation of isotype switching to IgE isotypes // inferred from electronic annotation /// 0048295 // positive regulation of isotype switching to IgE isotypes // not recorded /// 0048304 // positive regulation of isotype switching to IgG isotypes // inferred from electronic annotation /// 0048304 // positive regulation of isotype switching to IgG isotypes // not recorded /// 0050727 // regulation of inflammatory response // inferred from direct assay /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050776 // regulation of immune response // inferred from electronic annotation /// 0050776 // regulation of immune response // not recorded /// 0050871 // positive regulation of B cell activation // not recorded /// 0050871 // positive regulation of B cell activation // inferred from electronic annotation /// 0051091 // positive regulation of transcription factor activity // inferred from electronic annotation /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0071288 // cellular response to mercury ion // inferred from expression pattern 0005576 // extracellular region // traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // not recorded /// 0005125 // cytokine activity // traceable author statement /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005126 // cytokine receptor binding // inferred from electronic annotation /// 0005136 // interleukin-4 receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation 1371129_at X73292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X73292.1 /DB_XREF=gi:313805 /GEN=cpg1 /FEA=mRNA /CNT=1 /TID=Rn.10347.1 /TIER=ConsEnd /STK=0 /UG=Rn.10347 /DEF=R.norvegicus cpg1 mRNA. /PROD=CPG1 X73292 candidate plasticity gene 1 Cpg1 299247 NM_178104 0048168 // regulation of neuronal synaptic plasticity // inferred from direct assay 1371130_at X63744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X63744.1 /DB_XREF=gi:56268 /FEA=mRNA /CNT=1 /TID=Rn.34134.3 /TIER=ConsEnd /STK=0 /UG=Rn.34134 /LL=29483 /UG_GENE=Slc1a3 /DEF=R.norvegicus mRNA for glutamateaspartate transporter protein. /PROD=glutamateaspartate transporter X63744 solute carrier family 1 (glial high affinity glutamate transporter), member 3 Slc1a3 29483 NM_019225 0003333 // amino acid transmembrane transport // not recorded /// 0006536 // glutamate metabolic process // not recorded /// 0006536 // glutamate metabolic process // inferred from electronic annotation /// 0006537 // glutamate biosynthetic process // inferred from electronic annotation /// 0006537 // glutamate biosynthetic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006835 // dicarboxylic acid transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // traceable author statement /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0009416 // response to light stimulus // inferred from electronic annotation /// 0009416 // response to light stimulus // not recorded /// 0009449 // gamma-aminobutyric acid biosynthetic process // inferred from electronic annotation /// 0009449 // gamma-aminobutyric acid biosynthetic process // not recorded /// 0009611 // response to wounding // inferred from electronic annotation /// 0009611 // response to wounding // not recorded /// 0010035 // response to inorganic substance // inferred from direct assay /// 0015807 // L-amino acid transport // not recorded /// 0015813 // L-glutamate transport // inferred from direct assay /// 0015813 // L-glutamate transport // inferred from mutant phenotype /// 0015813 // L-glutamate transport // not recorded /// 0015813 // L-glutamate transport // inferred from electronic annotation /// 0021545 // cranial nerve development // inferred from electronic annotation /// 0021545 // cranial nerve development // not recorded /// 0031223 // auditory behavior // inferred from electronic annotation /// 0031223 // auditory behavior // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0043490 // malate-aspartate shuttle // inferred from direct assay /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0046677 // response to antibiotic // not recorded /// 0048667 // cell morphogenesis involved in neuron differentiation // inferred from electronic annotation /// 0048667 // cell morphogenesis involved in neuron differentiation // not recorded /// 0050806 // positive regulation of synaptic transmission // inferred from electronic annotation /// 0050806 // positive regulation of synaptic transmission // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0051938 // L-glutamate import // inferred from electronic annotation /// 0051938 // L-glutamate import // not recorded /// 0070779 // D-aspartate import // inferred from electronic annotation /// 0070779 // D-aspartate import // not recorded /// 0071436 // sodium ion export // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0042995 // cell projection // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043197 // dendritic spine // inferred from direct assay /// 0043205 // fibril // inferred from electronic annotation /// 0043205 // fibril // not recorded /// 0045202 // synapse // inferred from direct assay 0005313 // L-glutamate transmembrane transporter activity // inferred from direct assay /// 0005313 // L-glutamate transmembrane transporter activity // traceable author statement /// 0005314 // high-affinity glutamate transmembrane transporter activity // inferred from mutant phenotype /// 0005314 // high-affinity glutamate transmembrane transporter activity // not recorded /// 0005314 // high-affinity glutamate transmembrane transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015293 // symporter activity // inferred from electronic annotation /// 0016595 // glutamate binding // inferred from electronic annotation /// 0016595 // glutamate binding // not recorded /// 0016597 // amino acid binding // not recorded /// 0016597 // amino acid binding // inferred from electronic annotation /// 0017153 // sodium:dicarboxylate symporter activity // inferred from electronic annotation 1371131_a_at U30789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U30789.1 /DB_XREF=gi:1216375 /FEA=mRNA /CNT=1 /TID=Rn.2758.1 /TIER=ConsEnd /STK=0 /UG=Rn.2758 /LL=117514 /UG_GENE=Vdup1 /UG_TITLE=upregulated by 1,25-dihydroxyvitamin D-3 /DEF=Rattus norvegicus clone N27 mRNA. U30789 thioredoxin interacting protein Txnip 117514 NM_001008767 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006606 // protein import into nucleus // not recorded /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0042127 // regulation of cell proliferation // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0048008 // platelet-derived growth factor receptor signaling pathway // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0051592 // response to calcium ion // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // inferred from direct assay 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0004857 // enzyme inhibitor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0031625 // ubiquitin protein ligase binding // not recorded 1371132_a_at AJ428573 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ428573.1 /DB_XREF=gi:18376634 /GEN=ank3 /FEA=mRNA /CNT=1 /TID=Rn.52763.2 /TIER=ConsEnd /STK=0 /UG=Rn.52763 /LL=83682 /DEF=Rattus norvegicus mRNA for ankyrin G107 (ank3 gene). /PROD=ankyrin G107 AJ428573 ankyrin 3, epithelial Ank3 361833 NM_001033984 /// NM_031805 0007165 // signal transduction // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // non-traceable author statement /// 0045184 // establishment of protein localization // not recorded /// 0045184 // establishment of protein localization // inferred from electronic annotation /// 0050808 // synapse organization // not recorded /// 0050808 // synapse organization // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0045202 // synapse // inferred from electronic annotation 0005200 // structural constituent of cytoskeleton // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // non-traceable author statement 1371133_a_at M12492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M12492.1 /DB_XREF=gi:206670 /FEA=mRNA /CNT=1 /TID=Rn.4075.1 /TIER=ConsEnd /STK=0 /UG=Rn.4075 /UG_TITLE=Rat type II cAMP-dependent protein kinase regulatory subunit mRNA, 3 end /DEF=Rat type II cAMP-dependent protein kinase regulatory subunit mRNA, 3 end. M12492 protein kinase, cAMP dependent regulatory, type II beta Prkar2b 24679 NM_001030020 0001932 // regulation of protein phosphorylation // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007612 // learning // inferred from electronic annotation /// 0007612 // learning // not recorded /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0034199 // activation of protein kinase A activity // not recorded /// 0042325 // regulation of phosphorylation // not recorded /// 0045859 // regulation of protein kinase activity // inferred from direct assay /// 0050790 // regulation of catalytic activity // not recorded 0000267 // cell fraction // inferred from direct assay /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005952 // cAMP-dependent protein kinase complex // inferred from direct assay /// 0005952 // cAMP-dependent protein kinase complex // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from direct assay /// 0008603 // cAMP-dependent protein kinase regulator activity // not recorded /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from mutant phenotype /// 0030552 // cAMP binding // inferred from direct assay /// 0030552 // cAMP binding // inferred from electronic annotation /// 0034236 // protein kinase A catalytic subunit binding // inferred by curator 1371134_at M93018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M93018.1 /DB_XREF=gi:202863 /FEA=mRNA /CNT=1 /TID=Rn.5805.2 /TIER=ConsEnd /STK=0 /UG=Rn.5805 /LL=170699 /UG_GENE=Atp2c1 /UG_TITLE=ATPase, Ca++-sequestering /DEF=Rat alternatively spliced mRNA. M93018 ATPase, Ca++ transporting, type 2C, member 1 Atp2c1 170699 NM_131907 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from mutant phenotype /// 0006816 // calcium ion transport // not recorded /// 0006816 // calcium ion transport // inferred from sequence or structural similarity /// 0006828 // manganese ion transport // not recorded /// 0006828 // manganese ion transport // inferred from sequence or structural similarity /// 0006874 // cellular calcium ion homeostasis // inferred from mutant phenotype /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0008544 // epidermis development // not recorded /// 0008544 // epidermis development // inferred from sequence or structural similarity /// 0016339 // calcium-dependent cell-cell adhesion // not recorded /// 0016339 // calcium-dependent cell-cell adhesion // inferred from sequence or structural similarity /// 0030026 // cellular manganese ion homeostasis // not recorded /// 0030026 // cellular manganese ion homeostasis // inferred from sequence or structural similarity /// 0031532 // actin cytoskeleton reorganization // not recorded /// 0031532 // actin cytoskeleton reorganization // inferred from sequence or structural similarity /// 0032468 // Golgi calcium ion homeostasis // not recorded /// 0032468 // Golgi calcium ion homeostasis // inferred from sequence or structural similarity /// 0032472 // Golgi calcium ion transport // not recorded /// 0032472 // Golgi calcium ion transport // inferred from sequence or structural similarity /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from sequence or structural similarity 0000139 // Golgi membrane // not recorded /// 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005802 // trans-Golgi network // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // inferred from sequence or structural similarity /// 0005388 // calcium-transporting ATPase activity // inferred from direct assay /// 0005388 // calcium-transporting ATPase activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // not recorded /// 0005388 // calcium-transporting ATPase activity // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0015410 // manganese-transporting ATPase activity // not recorded /// 0015410 // manganese-transporting ATPase activity // inferred from sequence or structural similarity /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0030145 // manganese ion binding // not recorded /// 0030145 // manganese ion binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1371135_at AJ295748 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ295748.1 /DB_XREF=gi:11322488 /GEN=XT-I /FEA=mRNA /CNT=1 /TID=Rn.64484.1 /TIER=ConsEnd /STK=0 /UG=Rn.64484 /LL=64133 /DEF=Rattus norvegicus partial mRNA for xylosyltransferase I (XT-I gene). /PROD=xylosyltransferase I AJ295748 xylosyltransferase 1 Xylt1 64133 XM_001078643 /// XM_341912 0030166 // proteoglycan biosynthetic process // inferred from mutant phenotype /// 0034605 // cellular response to heat // inferred from electronic annotation /// 0034605 // cellular response to heat // not recorded /// 0048681 // negative regulation of axon regeneration // inferred from mutant phenotype /// 0070555 // response to interleukin-1 // inferred from expression pattern 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0008375 // acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030158 // protein xylosyltransferase activity // inferred from electronic annotation 1371136_at AJ271834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ271834.1 /DB_XREF=gi:12666520 /GEN=ppm1b2 /FEA=mRNA /CNT=1 /TID=Rn.4143.2 /TIER=ConsEnd /STK=0 /UG=Rn.4143 /LL=24667 /DEF=Rattus norvegicus mRNA for protein phosphatase 1B2 (ppm1b2 gene). /PROD=protein phosphatase 1B2 53 kDa isoform AJ271834 protein phosphatase 1B, magnesium dependent, beta isoform Ppm1b 24667 NM_033096 0006470 // protein dephosphorylation // inferred from electronic annotation 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371137_at X95189 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X95189.1 /DB_XREF=gi:1684746 /GEN=THCOX /FEA=mRNA /CNT=1 /TID=Rn.10622.1 /TIER=ConsEnd /STK=0 /UG=Rn.10622 /DEF=R.norvegicus mRNA for Trihydroxycoprostanoyl-CoA Oxidase. /PROD=trihydroxycoprostanoyl-CoA oxidase X95189 acyl-Coenzyme A oxidase 2, branched chain Acox2 252898 NM_145770 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from expression pattern /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from direct assay /// 0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation 0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0003997 // acyl-CoA oxidase activity // inferred from electronic annotation /// 0005504 // fatty acid binding // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation /// 0033791 // 3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA 24-hydroxylase activity // inferred from direct assay /// 0033791 // 3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA 24-hydroxylase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from direct assay /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1371138_at AJ243303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ243303.1 /DB_XREF=gi:6646849 /GEN=trisk51 /FEA=mRNA /CNT=1 /TID=Rn.41863.3 /TIER=ConsEnd /STK=0 /UG=Rn.41863 /LL=59299 /DEF=Rattus norvegicus mRNA for triadin 51 kDa (TRISK 51). /PROD=triadin 51 kDa (TRISK 51) AJ243303 triadin Trdn 59299 NM_021666 0006874 // cellular calcium ion homeostasis // inferred from mutant phenotype /// 0006874 // cellular calcium ion homeostasis // non-traceable author statement /// 0010880 // regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014902 // myotube differentiation // inferred from expression pattern /// 0032235 // negative regulation of calcium ion transport via store-operated calcium channel activity // inferred from mutant phenotype 0005737 // cytoplasm // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0014701 // junctional sarcoplasmic reticulum membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // traceable author statement 1371139_at X70706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X70706.1 /DB_XREF=gi:57380 /FEA=mRNA /CNT=1 /TID=Rn.32103.1 /TIER=ConsEnd /STK=0 /UG=Rn.32103 /LL=81748 /UG_GENE=Pls3 /DEF=R.norvegicus mRNA for T-plastin. /PROD=T-plastin X70706 plastin 3 (T-isoform) Pls3 81748 NM_031084 0042491 // auditory receptor cell differentiation // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0032420 // stereocilium // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371140_a_at Y14635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y14635.1 /DB_XREF=gi:2815276 /FEA=mRNA /CNT=1 /TID=Rn.37523.2 /TIER=ConsEnd /STK=0 /UG=Rn.37523 /LL=25364 /UG_GENE=Accn1 /DEF=Rattus norvegicus mRNA for proton-gated cation channels modulatory subunit. /PROD=proton-gated cation channels modulatory subunitMDEG2 Y14635 amiloride-sensitive cation channel 1, neuronal Accn1 25364 NM_001034014 /// NM_012892 0001101 // response to acid // inferred from mutant phenotype /// 0001101 // response to acid // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006812 // cation transport // traceable author statement /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // not recorded /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0007602 // phototransduction // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0009612 // response to mechanical stimulus // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0050915 // sensory perception of sour taste // traceable author statement /// 0050974 // detection of mechanical stimulus involved in sensory perception // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0043005 // neuron projection // not recorded /// 0043025 // neuronal cell body // not recorded 0005216 // ion channel activity // inferred from direct assay /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005248 // voltage-gated sodium channel activity // inferred from direct assay /// 0005261 // cation channel activity // not recorded /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015280 // ligand-gated sodium channel activity // inferred from mutant phenotype /// 0015280 // ligand-gated sodium channel activity // not recorded /// 0015280 // ligand-gated sodium channel activity // inferred from electronic annotation 1371141_at AJ300164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ300164.1 /DB_XREF=gi:12055543 /GEN=Ucp-4 /FEA=mRNA /CNT=1 /TID=Rn.64630.3 /TIER=ConsEnd /STK=0 /UG=Rn.64630 /LL=85262 /DEF=Rattus norvegicus mRNA for uncoupling protein UCP-4 (Ucp-4 gene) isoform c. /PROD=uncoupling protein UCP-4, isoform c AJ300164 solute carrier family 25, member 27 Slc25a27 85262 NM_053500 0006810 // transport // inferred from electronic annotation /// 0046902 // regulation of mitochondrial membrane permeability // non-traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1371142_at M33296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M33296.2 /DB_XREF=gi:19924181 /FEA=mRNA /CNT=1 /TID=Rn.10909.1 /TIER=ConsEnd /STK=0 /UG=Rn.10909 /DEF=Rattus norvegicus olfactory-specific cytochrome P-450 (P-450olf1) mRNA, partial cds. /PROD=olfactory-specific cytochrome P-450 (P-450olf1) M33296 cytochrome P450, family 2, subfamily g, polypeptide 1 Cyp2g1 25251 NM_012787 0007608 // sensory perception of smell // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // traceable author statement /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1371143_at M63991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M63991.1 /DB_XREF=gi:207159 /GEN=TBG /FEA=mRNA /CNT=1 /TID=Rn.9948.1 /TIER=ConsEnd /STK=0 /UG=Rn.9948 /LL=81806 /DEF=Rat thyroxine-binding globulin (TBG) mRNA, 3 end. /PROD=thyroxine-binding globulin M63991 serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7 Serpina7 81806 XM_001054915 /// XM_343823 0007568 // aging // inferred from expression pattern /// 0009791 // post-embryonic development // inferred from direct assay /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0033189 // response to vitamin A // inferred from direct assay /// 0034695 // response to prostaglandin E stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from direct assay /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0051412 // response to corticosterone stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // traceable author statement 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0015349 // thyroid hormone transmembrane transporter activity // traceable author statement /// 0042562 // hormone binding // inferred from direct assay 1371144_at AF038043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF038043.1 /DB_XREF=gi:3098349 /FEA=mRNA /CNT=1 /TID=Rn.14546.1 /TIER=ConsEnd /STK=0 /UG=Rn.14546 /LL=60576 /UG_GENE=Treh /DEF=Rattus norvegicus alpha,alpha-trehalase mRNA, partial cds. /PROD=alpha,alpha-trehalase AF038043 trehalase (brush-border membrane glycoprotein) Treh 60576 NM_001136141 0005991 // trehalose metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004555 // alpha,alpha-trehalase activity // inferred from electronic annotation /// 0004555 // alpha,alpha-trehalase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation 1371145_at Z11995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Z11995.1 /DB_XREF=gi:55551 /FEA=mRNA /CNT=1 /TID=Rn.10293.2 /TIER=ConsEnd /STK=0 /UG=Rn.10293 /LL=116565 /UG_GENE=Lrpap1 /DEF=R.norvegicus mRNA encoding 45kDa protein which binds to heymann nephritis antigen gp330. /PROD=45kDa protein Z11995 0010916 // negative regulation of very-low-density lipoprotein particle clearance // inferred from electronic annotation /// 0032091 // negative regulation of protein binding // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0048237 // rough endoplasmic reticulum lumen // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0008201 // heparin binding // inferred from electronic annotation /// 0048019 // receptor antagonist activity // inferred from electronic annotation /// 0050750 // low-density lipoprotein receptor binding // inferred from electronic annotation /// 0070326 // very-low-density lipoprotein receptor binding // inferred from electronic annotation 1371146_at L08812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L08812.1 /DB_XREF=gi:349724 /GEN=TFEC /FEA=mRNA /CNT=1 /TID=Rn.9659.1 /TIER=ConsEnd /STK=0 /UG=Rn.9659 /LL=26296 /DEF=Rat leucine zipper protein (TFEC) mRNA, partial cds. /PROD=leucine zipper L08812 transcription factor EC Tfec 26296 NM_022379 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0034605 // cellular response to heat // inferred from electronic annotation /// 0034605 // cellular response to heat // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1371147_at X69834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X69834.1 /DB_XREF=gi:57295 /FEA=mRNA /CNT=1 /TID=Rn.10424.1 /TIER=ConsEnd /STK=0 /UG=Rn.10424 /DEF=R.norvegicus mRNA for serine protease inhibitor 2.4. /PROD=serine protease inhibitor 2.4 X69834 serine (or cysteine) proteinase inhibitor, clade A, member 3M Serpina3m 299276 XM_001067511 /// XM_216782 0034097 // response to cytokine stimulus // not recorded /// 0043434 // response to peptide hormone stimulus // not recorded 0005576 // extracellular region // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1371148_s_at X52017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X52017.1 /DB_XREF=gi:55621 /GEN=alpha-1.6 /FEA=mRNA /CNT=1 /TID=Rn.82712.1 /TIER=ConsEnd /STK=0 /UG=Rn.82712 /LL=171367 /DEF=R.norvegicus mRNA for alpha-internexin. /PROD=alpha-internexin X52017 internexin neuronal intermediate filament protein, alpha Ina 24503 NM_019128 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042246 // tissue regeneration // inferred from expression pattern /// 0045104 // intermediate filament cytoskeleton organization // not recorded /// 0045104 // intermediate filament cytoskeleton organization // inferred from electronic annotation /// 0060052 // neurofilament cytoskeleton organization // inferred from electronic annotation /// 0060052 // neurofilament cytoskeleton organization // not recorded 0005882 // intermediate filament // inferred from electronic annotation /// 0005883 // neurofilament // inferred from electronic annotation /// 0005883 // neurofilament // not recorded 0005198 // structural molecule activity // inferred from electronic annotation 1371149_at Y11490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y11490.1 /DB_XREF=gi:1885329 /FEA=mRNA /CNT=1 /TID=Rn.42923.1 /TIER=ConsEnd /STK=0 /UG=Rn.42923 /LL=57029 /UG_GENE=Adam18 /DEF=R.norvegicus mRNA for tMDC III protein, partial. /PROD=tMDC III Y11490 ADAM metallopeptidase domain 18 Adam18 57029 XM_001072121 /// XM_341456 0006508 // proteolysis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1371150_at X75207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X75207.1 /DB_XREF=gi:473122 /GEN=CCND1 /FEA=mRNA /CNT=1 /TID=Rn.9471.1 /TIER=ConsEnd /STK=0 /UG=Rn.9471 /LL=58919 /DEF=R.norvegicus CCND1 mRNA for cyclin D1. /PROD=CYCLIN D1 X75207 cyclin D1 Ccnd1 58919 NM_171992 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0000082 // G1/S transition of mitotic cell cycle // inferred from sequence or structural similarity /// 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000320 // re-entry into mitotic cell cycle // inferred from electronic annotation /// 0000320 // re-entry into mitotic cell cycle // not recorded /// 0001889 // liver development // inferred from expression pattern /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from sequence or structural similarity /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007595 // lactation // inferred from electronic annotation /// 0007595 // lactation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0010033 // response to organic substance // inferred from expression pattern /// 0010039 // response to iron ion // inferred from expression pattern /// 0010165 // response to X-ray // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030857 // negative regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030857 // negative regulation of epithelial cell differentiation // not recorded /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0031571 // mitotic cell cycle G1/S DNA damage checkpoint // not recorded /// 0031571 // mitotic cell cycle G1/S DNA damage checkpoint // inferred from sequence or structural similarity /// 0031571 // mitotic cell cycle G1/S DNA damage checkpoint // inferred from electronic annotation /// 0032026 // response to magnesium ion // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0033197 // response to vitamin E // inferred from expression pattern /// 0033327 // Leydig cell differentiation // inferred from mutant phenotype /// 0033598 // mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0033598 // mammary gland epithelial cell proliferation // not recorded /// 0042325 // regulation of phosphorylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045444 // fat cell differentiation // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // not recorded /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0050790 // regulation of catalytic activity // not recorded /// 0051301 // cell division // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from expression pattern /// 0051726 // regulation of cell cycle // not recorded /// 0051726 // regulation of cell cycle // traceable author statement /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060749 // mammary gland alveolus development // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // not recorded /// 0070141 // response to UV-A // inferred from electronic annotation /// 0070141 // response to UV-A // not recorded /// 0071445 // cellular response to protein stimulus // not recorded 0000307 // cyclin-dependent protein kinase holoenzyme complex // inferred from electronic annotation /// 0000307 // cyclin-dependent protein kinase holoenzyme complex // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded 0004672 // protein kinase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016538 // cyclin-dependent protein kinase regulator activity // inferred from electronic annotation /// 0016538 // cyclin-dependent protein kinase regulator activity // not recorded /// 0019899 // enzyme binding // not recorded /// 0019901 // protein kinase binding // inferred from direct assay /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1371151_at U67914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U67914.1 /DB_XREF=gi:1698707 /GEN=R-CPA /FEA=mRNA /CNT=1 /TID=Rn.10700.1 /TIER=ConsEnd /STK=0 /UG=Rn.10700 /LL=54242 /DEF=Rattus norvegicus mast cell carboxypeptidase A precursor (R-CPA) mRNA, partial cds. /PROD=mast cell carboxypeptidase A precursor U67914 carboxypeptidase A3, mast cell Cpa3 54242 NM_019300 0006508 // proteolysis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0030133 // transport vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371152_a_at Z18877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Z18877.1 /DB_XREF=gi:56789 /FEA=mRNA /CNT=1 /TID=Rn.10383.1 /TIER=ConsEnd /STK=0 /UG=Rn.10383 /DEF=R.norvegicus mRNA for 25 oligoadenylate synthetase. /PROD=25 oligoadenylate synthetase Z18877 2'-5' oligoadenylate synthetase 1A Oas1a 192281 NM_138913 0006955 // immune response // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0009615 // response to virus // traceable author statement /// 0048525 // negative regulation of viral reproduction // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0001730 // 2'-5'-oligoadenylate synthetase activity // inferred from direct assay /// 0001730 // 2'-5'-oligoadenylate synthetase activity // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1371153_a_at AJ310837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ310837.1 /DB_XREF=gi:13548660 /FEA=mRNA /CNT=1 /TID=Rn.10379.3 /TIER=ConsEnd /STK=0 /UG=Rn.10379 /LL=24397 /UG_GENE=Glra2 /DEF=Rattus norvegicus mRNA for glycine receptor alpha 2 precursor. /PROD=glycine receptor alpha 2 precursor AJ310837 glycine receptor, alpha 2 Glra2 24397 NM_012568 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006811 // ion transport // not recorded /// 0006821 // chloride transport // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007416 // synapse assembly // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0016594 // glycine binding // inferred from electronic annotation /// 0016594 // glycine binding // not recorded /// 0016934 // extracellular-glycine-gated chloride channel activity // inferred from electronic annotation /// 0016934 // extracellular-glycine-gated chloride channel activity // not recorded /// 0016934 // extracellular-glycine-gated chloride channel activity // traceable author statement /// 0022824 // transmitter-gated ion channel activity // inferred from electronic annotation 1371154_a_at L23862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L23862.1 /DB_XREF=gi:393220 /FEA=mRNA /CNT=1 /TID=Rn.81060.2 /TIER=ConsEnd /STK=0 /UG=Rn.81060 /LL=116544 /UG_GENE=Pou2f3 /UG_TITLE=POU domain, class 2, transcription factor 3 /DEF=Rat Skn-1a mRNA. L23862 POU class 2 homeobox 3 Pou2f3 116544 NM_001105745 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0008544 // epidermis development // inferred from direct assay /// 0008544 // epidermis development // not recorded /// 0008544 // epidermis development // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // not recorded /// 0042060 // wound healing // inferred from electronic annotation /// 0042060 // wound healing // not recorded /// 0043922 // negative regulation by host of viral transcription // inferred from electronic annotation /// 0043922 // negative regulation by host of viral transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // not recorded 1371155_at AF021350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF021350.1 /DB_XREF=gi:2921745 /GEN=NKG2A /FEA=mRNA /CNT=1 /TID=Rn.9895.1 /TIER=ConsEnd /STK=0 /UG=Rn.9895 /LL=29683 /DEF=Rattus norvegicus natural killer cell protein group 2-A (NKG2A) mRNA, partial cds. /PROD=natural killer cell protein group 2-A AF021350 killer cell lectin-like receptor subfamily C, member 1 Klrc1 29683 NM_001037441 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded 0005488 // binding // inferred from electronic annotation 1371156_a_at AJ310836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ310836.1 /DB_XREF=gi:13548658 /FEA=mRNA /CNT=1 /TID=Rn.10109.2 /TIER=ConsEnd /STK=0 /UG=Rn.10109 /LL=25674 /UG_GENE=Glra1 /DEF=Rattus norvegicus mRNA for glycine receptor alpha 1 precursor (truncated), deletion transcript. /PROD=glycine alpha 1 precursor, truncated AJ310836 glycine receptor, alpha 1 Glra1 25674 NM_013133 0001508 // regulation of action potential // not recorded /// 0001508 // regulation of action potential // inferred from electronic annotation /// 0001964 // startle response // not recorded /// 0001964 // startle response // inferred from sequence or structural similarity /// 0001964 // startle response // inferred from electronic annotation /// 0002087 // regulation of respiratory gaseous exchange by neurological system process // not recorded /// 0002087 // regulation of respiratory gaseous exchange by neurological system process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // not recorded /// 0006811 // ion transport // inferred from sequence or structural similarity /// 0006811 // ion transport // inferred from electronic annotation /// 0006820 // anion transport // inferred from direct assay /// 0006821 // chloride transport // inferred from direct assay /// 0006821 // chloride transport // not recorded /// 0006821 // chloride transport // inferred from sequence or structural similarity /// 0006821 // chloride transport // inferred from electronic annotation /// 0006936 // muscle contraction // not recorded /// 0006936 // muscle contraction // inferred from sequence or structural similarity /// 0006936 // muscle contraction // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007218 // neuropeptide signaling pathway // inferred from sequence or structural similarity /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007340 // acrosome reaction // not recorded /// 0007340 // acrosome reaction // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0007601 // visual perception // inferred from electronic annotation /// 0007628 // adult walking behavior // not recorded /// 0007628 // adult walking behavior // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0042391 // regulation of membrane potential // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0043576 // regulation of respiratory gaseous exchange // not recorded /// 0043576 // regulation of respiratory gaseous exchange // inferred from electronic annotation /// 0050884 // neuromuscular process controlling posture // not recorded /// 0050884 // neuromuscular process controlling posture // inferred from electronic annotation /// 0050905 // neuromuscular process // not recorded /// 0050905 // neuromuscular process // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051970 // negative regulation of transmission of nerve impulse // not recorded /// 0051970 // negative regulation of transmission of nerve impulse // inferred from sequence or structural similarity /// 0051970 // negative regulation of transmission of nerve impulse // inferred from electronic annotation /// 0060012 // synaptic transmission, glycinergic // inferred from direct assay /// 0060012 // synaptic transmission, glycinergic // not recorded /// 0060012 // synaptic transmission, glycinergic // inferred from electronic annotation /// 0060013 // righting reflex // not recorded /// 0060013 // righting reflex // inferred from electronic annotation /// 0060080 // regulation of inhibitory postsynaptic membrane potential // not recorded /// 0060080 // regulation of inhibitory postsynaptic membrane potential // inferred from electronic annotation 0005622 // intracellular // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from sequence or structural similarity /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0045211 // postsynaptic membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016594 // glycine binding // inferred from direct assay /// 0016594 // glycine binding // not recorded /// 0016594 // glycine binding // inferred from sequence or structural similarity /// 0016594 // glycine binding // inferred from electronic annotation /// 0016933 // extracellular-glycine-gated ion channel activity // inferred from direct assay /// 0016934 // extracellular-glycine-gated chloride channel activity // inferred from direct assay /// 0016934 // extracellular-glycine-gated chloride channel activity // not recorded /// 0016934 // extracellular-glycine-gated chloride channel activity // inferred from sequence or structural similarity /// 0016934 // extracellular-glycine-gated chloride channel activity // inferred from electronic annotation /// 0022824 // transmitter-gated ion channel activity // inferred from electronic annotation /// 0030977 // taurine binding // not recorded /// 0030977 // taurine binding // inferred from sequence or structural similarity /// 0030977 // taurine binding // inferred from electronic annotation 1371157_at M14952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M14952.1 /DB_XREF=gi:202951 /FEA=mRNA /CNT=1 /TID=Rn.33815.2 /TIER=ConsEnd /STK=0 /UG=Rn.33815 /LL=54225 /UG_GENE=Apob /UG_TITLE=Apolipoprotein B /DEF=Rat apolipoprotein B (apoB) mRNA, partial cds. M14952 apolipoprotein B Apob 54225 NM_019287 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006629 // lipid metabolic process // inferred from direct assay /// 0006629 // lipid metabolic process // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006642 // triglyceride mobilization // inferred from electronic annotation /// 0006642 // triglyceride mobilization // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0009566 // fertilization // inferred from electronic annotation /// 0009566 // fertilization // not recorded /// 0009615 // response to virus // inferred from electronic annotation /// 0009615 // response to virus // not recorded /// 0009743 // response to carbohydrate stimulus // inferred from direct assay /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0010269 // response to selenium ion // inferred from expression pattern /// 0010744 // positive regulation of macrophage derived foam cell differentiation // inferred from electronic annotation /// 0010744 // positive regulation of macrophage derived foam cell differentiation // not recorded /// 0010884 // positive regulation of lipid storage // not recorded /// 0010884 // positive regulation of lipid storage // inferred from electronic annotation /// 0010886 // positive regulation of cholesterol storage // inferred from electronic annotation /// 0010886 // positive regulation of cholesterol storage // not recorded /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // not recorded /// 0019433 // triglyceride catabolic process // inferred from mutant phenotype /// 0019433 // triglyceride catabolic process // not recorded /// 0019433 // triglyceride catabolic process // inferred from electronic annotation /// 0030301 // cholesterol transport // not recorded /// 0030301 // cholesterol transport // inferred from electronic annotation /// 0030317 // sperm motility // inferred from electronic annotation /// 0030317 // sperm motility // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0034374 // low-density lipoprotein particle remodeling // inferred from electronic annotation /// 0034374 // low-density lipoprotein particle remodeling // not recorded /// 0034383 // low-density lipoprotein particle clearance // inferred from electronic annotation /// 0034383 // low-density lipoprotein particle clearance // not recorded /// 0042157 // lipoprotein metabolic process // not recorded /// 0042157 // lipoprotein metabolic process // inferred from electronic annotation /// 0042158 // lipoprotein biosynthetic process // inferred from electronic annotation /// 0042158 // lipoprotein biosynthetic process // not recorded /// 0042159 // lipoprotein catabolic process // inferred from electronic annotation /// 0042159 // lipoprotein catabolic process // not recorded /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0042953 // lipoprotein transport // inferred from electronic annotation /// 0042953 // lipoprotein transport // not recorded /// 0045540 // regulation of cholesterol biosynthetic process // inferred from electronic annotation /// 0045540 // regulation of cholesterol biosynthetic process // not recorded /// 0048844 // artery morphogenesis // inferred from electronic annotation /// 0048844 // artery morphogenesis // not recorded /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern /// 0071379 // cellular response to prostaglandin stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005788 // endoplasmic reticulum lumen // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0010008 // endosome membrane // not recorded /// 0012506 // vesicle membrane // inferred from direct assay /// 0030669 // clathrin-coated endocytic vesicle membrane // not recorded /// 0031904 // endosome lumen // not recorded /// 0031983 // vesicle lumen // inferred from direct assay /// 0034359 // mature chylomicron // inferred from electronic annotation /// 0034359 // mature chylomicron // not recorded /// 0034361 // very-low-density lipoprotein particle // inferred from direct assay /// 0034361 // very-low-density lipoprotein particle // not recorded /// 0034361 // very-low-density lipoprotein particle // inferred from electronic annotation /// 0034362 // low-density lipoprotein particle // inferred from electronic annotation /// 0034362 // low-density lipoprotein particle // not recorded /// 0034363 // intermediate-density lipoprotein particle // inferred from electronic annotation /// 0034363 // intermediate-density lipoprotein particle // not recorded /// 0042627 // chylomicron // not recorded /// 0042627 // chylomicron // inferred from electronic annotation 0005319 // lipid transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005543 // phospholipid binding // not recorded /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded /// 0008289 // lipid binding // inferred from mutant phenotype /// 0017127 // cholesterol transporter activity // inferred from electronic annotation /// 0017127 // cholesterol transporter activity // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0050750 // low-density lipoprotein receptor binding // inferred from electronic annotation /// 0050750 // low-density lipoprotein receptor binding // not recorded 1371158_at X59290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X59290.1 /DB_XREF=gi:56077 /GEN=eek /FEA=mRNA /CNT=1 /TID=Rn.44414.1 /TIER=ConsEnd /STK=0 /UG=Rn.44414 /LL=60589 /DEF=Rat eek mRNA for eph and elk-related kinase. /PROD=eph and elk-related kinase X59290 Eph receptor A8 Epha8 60589 NM_001191870 /// XM_001069777 /// XM_342952 0006468 // protein phosphorylation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1371159_a_at X79208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X79208.1 /DB_XREF=gi:558357 /FEA=mRNA /CNT=1 /TID=Rn.10324.2 /TIER=ConsEnd /STK=0 /UG=Rn.10324 /LL=25706 /UG_GENE=Cckbr /UG_TITLE=Cholecystokinin B receptor /DEF=R.norvegicus cckb mRNA, truncated. X79208 cholecystokinin B receptor Cckbr 25706 NM_013165 0001821 // histamine secretion // inferred from mutant phenotype /// 0002209 // behavioral defense response // inferred from mutant phenotype /// 0006915 // apoptosis // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from sequence or structural similarity /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007586 // digestion // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0032230 // positive regulation of synaptic transmission, GABAergic // inferred from mutant phenotype /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0050806 // positive regulation of synaptic transmission // inferred from mutant phenotype /// 0051930 // regulation of sensory perception of pain // inferred from mutant phenotype /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype /// 0060206 // estrous cycle phase // inferred from direct assay /// 0070371 // ERK1 and ERK2 cascade // inferred from mutant phenotype /// 0090274 // positive regulation of somatostatin secretion // inferred from mutant phenotype 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015054 // gastrin receptor activity // inferred from mutant phenotype /// 0015054 // gastrin receptor activity // not recorded /// 0015054 // gastrin receptor activity // inferred from sequence or structural similarity /// 0015054 // gastrin receptor activity // inferred from electronic annotation 1371160_at AJ133104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ133104.1 /DB_XREF=gi:4894187 /GEN=vamp2 /FEA=mRNA /CNT=1 /TID=Rn.31977.3 /TIER=ConsEnd /STK=0 /UG=Rn.31977 /LL=24803 /DEF=Rattus norvegicus mRNA for vesicle associated membrane protein 2B. /PROD=vesicle associated membrane protein 2B AJ133104 vesicle-associated membrane protein 2 Vamp2 24803 NM_012663 0006461 // protein complex assembly // inferred from direct assay /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0006944 // cellular membrane fusion // not recorded /// 0009749 // response to glucose stimulus // inferred from direct assay /// 0015031 // protein transport // inferred from mutant phenotype /// 0016044 // cellular membrane organization // not recorded /// 0016079 // synaptic vesicle exocytosis // not recorded /// 0016192 // vesicle-mediated transport // inferred from mutant phenotype /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0017156 // calcium ion-dependent exocytosis // not recorded /// 0017157 // regulation of exocytosis // inferred from mutant phenotype /// 0017157 // regulation of exocytosis // not recorded /// 0017157 // regulation of exocytosis // traceable author statement 0005792 // microsome // inferred from direct assay /// 0005802 // trans-Golgi network // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0008021 // synaptic vesicle // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // not recorded /// 0030141 // stored secretory granule // inferred from direct assay /// 0030141 // stored secretory granule // not recorded /// 0030667 // secretory granule membrane // not recorded /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // not recorded /// 0031201 // SNARE complex // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0042589 // zymogen granule membrane // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0060203 // clathrin sculpted glutamate transport vesicle membrane // not recorded /// 0070032 // synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex // inferred from direct assay /// 0070044 // synaptobrevin 2-SNAP-25-syntaxin-1a complex // inferred from direct assay 0000149 // SNARE binding // inferred from direct assay /// 0000149 // SNARE binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // not recorded /// 0005543 // phospholipid binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0017022 // myosin binding // inferred from physical interaction /// 0017075 // syntaxin-1 binding // inferred from direct assay /// 0017075 // syntaxin-1 binding // inferred from physical interaction /// 0019905 // syntaxin binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction 1371161_at Y18208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y18208.1 /DB_XREF=gi:3805820 /GEN=PPP1R4 /FEA=mRNA /CNT=1 /TID=Rn.30046.1 /TIER=ConsEnd /STK=0 /UG=Rn.30046 /DEF=Rattus norvegicus mRNA for protein phosphatase 1 (GL-subunit). /PROD=serine-threonine specific protein phosphatase,glycogen-binding (GL) subunit Y18208 protein phosphatase 1, regulatory (inhibitor) subunit 3B Ppp1r3b 192280 NM_138912 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005979 // regulation of glycogen biosynthetic process // inferred from direct assay /// 0005981 // regulation of glycogen catabolic process // inferred from direct assay 0000164 // protein phosphatase type 1 complex // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0042587 // glycogen granule // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0019888 // protein phosphatase regulator activity // inferred from direct assay /// 0019899 // enzyme binding // inferred from direct assay /// 0019899 // enzyme binding // inferred from mutant phenotype /// 0019899 // enzyme binding // inferred from physical interaction 1371162_at AJ311952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ311952.1 /DB_XREF=gi:16075338 /GEN=rc 56.1.3 /FEA=mRNA /CNT=1 /TID=Rn.81069.1 /TIER=ConsEnd /STK=0 /UG=Rn.81069 /DEF=Rattus norvegicus mRNA for G-protein coupled receptor (rc 56.1.3 gene). /PROD=G-protein coupled receptor AJ311952 MAS-related GPR, member X3 Mrgprx3 252960 NM_145787 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement 1371163_at Y17327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y17327.1 /DB_XREF=gi:5931742 /GEN=CDK107 /FEA=mRNA /CNT=1 /TID=Rn.80831.1 /TIER=ConsEnd /STK=0 /UG=Rn.80831 /LL=65273 /UG_TITLE=CDK107 /DEF=Rattus norvegicus CDK107 mRNA. Y17327 schlafen 3 Slfn3 114247 NM_053687 0005524 // ATP binding // inferred from electronic annotation 1371164_at X68657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X68657.1 /DB_XREF=gi:296175 /FEA=mRNA /CNT=1 /TID=Rn.48655.1 /TIER=ConsEnd /STK=0 /UG=Rn.48655 /LL=54269 /UG_GENE=Mcpt10 /DEF=R.norvegicus mRNA for granzyme-like protein II. /PROD=granzyme-like protein II X68657 mast cell protease 10 Mcpt10 54269 NM_017146 0006508 // proteolysis // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1371165_a_at AF458230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF458230.1 /DB_XREF=gi:18766343 /GEN=Atp2a3 /FEA=mRNA /CNT=1 /TID=Rn.9920.2 /TIER=ConsEnd /STK=0 /UG=Rn.9920 /LL=25391 /DEF=Rattus norvegicus sarcoendoplasmic reticulum Ca2+ ATPase isoform 3bc (Atp2a3) mRNA, partial cds. /PROD=sarcoendoplasmic reticulum Ca2+ ATPase isoform3bc AF458230 ATPase, Ca++ transporting, ubiquitous Atp2a3 25391 NM_012914 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // not recorded /// 0031965 // nuclear membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // inferred from direct assay /// 0005388 // calcium-transporting ATPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371166_at AJ011116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ011116.1 /DB_XREF=gi:3676237 /GEN=nos3 /FEA=mRNA /CNT=1 /TID=Rn.44265.1 /TIER=ConsEnd /STK=0 /UG=Rn.44265 /LL=24600 /DEF=Rattus norvegicus mRNA for endothelial nitric oxide synthase, 3 region, partial. /PROD=endothelial nitric oxide synthase AJ011116 nitric oxide synthase 3, endothelial cell Nos3 24600 NM_021838 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001542 // ovulation from ovarian follicle // inferred from electronic annotation /// 0001542 // ovulation from ovarian follicle // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0001974 // blood vessel remodeling // not recorded /// 0002028 // regulation of sodium ion transport // inferred from electronic annotation /// 0002028 // regulation of sodium ion transport // not recorded /// 0003100 // regulation of systemic arterial blood pressure by endothelin // inferred from electronic annotation /// 0003100 // regulation of systemic arterial blood pressure by endothelin // not recorded /// 0006527 // arginine catabolic process // inferred from electronic annotation /// 0006527 // arginine catabolic process // not recorded /// 0006809 // nitric oxide biosynthetic process // inferred from mutant phenotype /// 0006809 // nitric oxide biosynthetic process // not recorded /// 0006809 // nitric oxide biosynthetic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from mutant phenotype /// 0007568 // aging // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0010288 // response to lead ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014740 // negative regulation of muscle hyperplasia // inferred from electronic annotation /// 0014740 // negative regulation of muscle hyperplasia // not recorded /// 0014806 // smooth muscle hyperplasia // inferred from electronic annotation /// 0014806 // smooth muscle hyperplasia // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0031284 // positive regulation of guanylate cyclase activity // inferred from electronic annotation /// 0031284 // positive regulation of guanylate cyclase activity // not recorded /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0031663 // lipopolysaccharide-mediated signaling pathway // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0034405 // response to fluid shear stress // inferred from electronic annotation /// 0034405 // response to fluid shear stress // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043267 // negative regulation of potassium ion transport // inferred from electronic annotation /// 0043267 // negative regulation of potassium ion transport // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0043542 // endothelial cell migration // inferred from electronic annotation /// 0043542 // endothelial cell migration // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0050880 // regulation of blood vessel size // inferred from electronic annotation /// 0050880 // regulation of blood vessel size // not recorded /// 0051346 // negative regulation of hydrolase activity // inferred from electronic annotation /// 0051346 // negative regulation of hydrolase activity // not recorded /// 0051926 // negative regulation of calcium ion transport // inferred from electronic annotation /// 0051926 // negative regulation of calcium ion transport // not recorded /// 0055093 // response to hyperoxia // inferred from expression pattern /// 0055094 // response to lipoprotein stimulus // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0000139 // Golgi membrane // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from direct assay 0003785 // actin monomer binding // inferred from electronic annotation /// 0003785 // actin monomer binding // not recorded /// 0004517 // nitric-oxide synthase activity // inferred from direct assay /// 0004517 // nitric-oxide synthase activity // inferred from mutant phenotype /// 0004517 // nitric-oxide synthase activity // not recorded /// 0004517 // nitric-oxide synthase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0010181 // FMN binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0020037 // heme binding // not recorded /// 0034617 // tetrahydrobiopterin binding // inferred from electronic annotation /// 0034617 // tetrahydrobiopterin binding // not recorded /// 0034618 // arginine binding // inferred from electronic annotation /// 0034618 // arginine binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from electronic annotation 1371167_at AF087697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF087697.1 /DB_XREF=gi:3687906 /FEA=mRNA /CNT=1 /TID=Rn.44272.1 /TIER=ConsEnd /STK=0 /UG=Rn.44272 /LL=114202 /UG_GENE=Mpp3 /DEF=Rattus norvegicus dlg 3 mRNA, partial cds. /PROD=dlg 3 AF087697 membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3) Mpp3 114202 XM_001081482 /// XM_340911 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction 1371168_at AF087696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF087696.1 /DB_XREF=gi:3687904 /FEA=mRNA /CNT=1 /TID=Rn.44271.1 /TIER=ConsEnd /STK=0 /UG=Rn.44271 /LL=85275 /UG_GENE=Mpp2 /DEF=Rattus norvegicus dlg 2 mRNA, partial cds. /PROD=dlg 2 AF087696 membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2) Mpp2 85275 NM_053513 0009986 // cell surface // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030165 // PDZ domain binding // inferred from physical interaction 1371169_at X77815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X77815.1 /DB_XREF=gi:1563744 /GEN=VCS-alpha2 /FEA=mRNA /CNT=1 /TID=Rn.10590.1 /TIER=ConsEnd /STK=0 /UG=Rn.10590 /DEF=R.norvegicus VCS-alpha2 mRNA for SMR1-alpha2. /PROD=SMR1-alpha2 X77815 variable coding sequence A2 Vcsa2 289526 NM_198729 1371170_a_at AJ245643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ245643.1 /DB_XREF=gi:9844630 /GEN=IL-1 alpha /FEA=mRNA /CNT=1 /TID=Rn.12300.2 /TIER=ConsEnd /STK=0 /UG=Rn.12300 /LL=24493 /DEF=Rattus norvegicus mRNA for interleukin 1 alpha, splice variant (IL-1 alpha gene). /PROD=24 proIl-1 alpha AJ245643 interleukin 1 alpha Il1a 24493 NM_017019 0001660 // fever // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from expression pattern /// 0006954 // inflammatory response // non-traceable author statement /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009408 // response to heat // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0010193 // response to ozone // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010332 // response to gamma radiation // inferred from expression pattern /// 0010575 // positive regulation vascular endothelial growth factor production // inferred from electronic annotation /// 0010575 // positive regulation vascular endothelial growth factor production // not recorded /// 0010893 // positive regulation of steroid biosynthetic process // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0031424 // keratinization // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032755 // positive regulation of interleukin-6 production // inferred from mutant phenotype /// 0032874 // positive regulation of stress-activated MAPK cascade // inferred from direct assay /// 0033591 // response to L-ascorbic acid // inferred from expression pattern /// 0034605 // cellular response to heat // not recorded /// 0034605 // cellular response to heat // inferred from sequence or structural similarity /// 0034605 // cellular response to heat // inferred from electronic annotation /// 0042060 // wound healing // inferred from expression pattern /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from direct assay /// 0045086 // positive regulation of interleukin-2 biosynthetic process // inferred from electronic annotation /// 0045086 // positive regulation of interleukin-2 biosynthetic process // not recorded /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0045840 // positive regulation of mitosis // inferred from electronic annotation /// 0045840 // positive regulation of mitosis // not recorded /// 0046330 // positive regulation of JNK cascade // inferred from direct assay /// 0046688 // response to copper ion // not recorded /// 0046688 // response to copper ion // inferred from sequence or structural similarity /// 0046688 // response to copper ion // inferred from electronic annotation /// 0050715 // positive regulation of cytokine secretion // inferred from electronic annotation /// 0050715 // positive regulation of cytokine secretion // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0051930 // regulation of sensory perception of pain // inferred from direct assay /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay 0005125 // cytokine activity // inferred from mutant phenotype /// 0005125 // cytokine activity // not recorded /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005149 // interleukin-1 receptor binding // inferred from electronic annotation /// 0005150 // interleukin-1, Type I receptor binding // non-traceable author statement /// 0005507 // copper ion binding // not recorded /// 0005507 // copper ion binding // inferred from sequence or structural similarity /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371171_at M10094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M10094.1 /DB_XREF=gi:205412 /FEA=mRNA /CNT=1 /TID=Rn.39743.17 /TIER=ConsEnd /STK=0 /UG=Rn.39743 /LL=24737 /UG_GENE=RT1Aw2 /UG_TITLE=RT1 class Ib gene /DEF=Rat MHC class I truncated cell surface antigen mRNA. M10094 RT1 class Ib, locus EC2 RT1-EC2 24737 NM_012645 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from direct assay /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0002517 // T cell tolerance induction // inferred from mutant phenotype /// 0002657 // positive regulation of tolerance induction to nonself antigen // inferred from mutant phenotype /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0045953 // negative regulation of natural killer cell mediated cytotoxicity // inferred from mutant phenotype 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0030881 // beta-2-microglobulin binding // inferred from physical interaction /// 0042277 // peptide binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1371172_at M96626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M96626.1 /DB_XREF=gi:203212 /GEN=CA2+-ATPase /FEA=mRNA /CNT=1 /TID=Rn.11053.1 /TIER=ConsEnd /STK=0 /UG=Rn.11053 /LL=29599 /DEF=RAT plasma membrane CA2+-ATPase isoform 3 mRNA, partial cds. /PROD=CA2+-ATPase isoform 3 M96626 ATPase, Ca++ transporting, plasma membrane 3 Atp2b3 29599 NM_133288 0003407 // neural retina development // inferred from expression pattern /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015085 // calcium ion transmembrane transporter activity // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1371173_a_at Y13591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y13591.1 /DB_XREF=gi:2765345 /GEN=CAST /FEA=mRNA /CNT=1 /TID=Rn.10882.4 /TIER=ConsEnd /STK=0 /UG=Rn.10882 /LL=25403 /DEF=Rattus norvegicus mRNA for calpastatin, clone RNCAST23. /PROD=calpastatin Y13591 calpastatin Cast 25403 NM_001033715 /// NM_001033716 /// NM_053295 0007520 // myoblast fusion // inferred from expression pattern /// 0042176 // regulation of protein catabolic process // traceable author statement /// 0043086 // negative regulation of catalytic activity // inferred from direct assay 0002020 // protease binding // inferred by curator /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0010859 // calcium-dependent cysteine-type endopeptidase inhibitor activity // inferred from direct assay /// 0010859 // calcium-dependent cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1371174_s_at X98234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X98234.1 /DB_XREF=gi:2143329 /FEA=mRNA /CNT=1 /TID=Rn.74041.1 /TIER=ConsEnd /STK=0 /UG=Rn.74041 /LL=29329 /UG_GENE=Smstr2 /DEF=R.norvegicus mRNA for somatostatin receptor. /PROD=somatostatin sst2B receptor X98234 somatostatin receptor 2 Sstr2 54305 NM_019348 0006937 // regulation of muscle contraction // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007268 // synaptic transmission // not recorded /// 0007283 // spermatogenesis // inferred from expression pattern /// 0021549 // cerebellum development // inferred from expression pattern /// 0030432 // peristalsis // inferred from mutant phenotype /// 0030900 // forebrain development // inferred from expression pattern /// 0042594 // response to starvation // inferred from expression pattern /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern /// 0071392 // cellular response to estradiol stimulus // inferred from expression pattern 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004994 // somatostatin receptor activity // inferred from direct assay /// 0004994 // somatostatin receptor activity // not recorded /// 0004994 // somatostatin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0030165 // PDZ domain binding // not recorded /// 0030165 // PDZ domain binding // inferred from electronic annotation 1371175_a_at AF389419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF389419.1 /DB_XREF=gi:14626722 /FEA=mRNA /CNT=1 /TID=Rn.30066.6 /TIER=ConsEnd /STK=0 /UG=Rn.30066 /LL=29716 /UG_GENE=Cacna1d /DEF=Rattus norvegicus N-type calcium channel pore-forming subunit alpha 1B mRNA, partial cds, alternatively spliced. /PROD=N-type calcium channel pore-forming subunitalpha 1B AF389419 calcium channel, voltage-dependent, N type, alpha 1B subunit Cacna1b 257648 NM_001195199 /// NM_147141 0001956 // positive regulation of neurotransmitter secretion // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from mutant phenotype /// 0006816 // calcium ion transport // not recorded /// 0007269 // neurotransmitter secretion // not recorded /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0008016 // regulation of heart contraction // not recorded /// 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0008217 // regulation of blood pressure // not recorded /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0033574 // response to testosterone stimulus // inferred from mutant phenotype /// 0045471 // response to ethanol // inferred from expression pattern /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // not recorded 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005891 // voltage-gated calcium channel complex // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030425 // dendrite // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043025 // neuronal cell body // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043198 // dendritic shaft // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from mutant phenotype /// 0005245 // voltage-gated calcium channel activity // not recorded /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded 1371176_at AB012233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB012233.1 /DB_XREF=gi:2982733 /GEN=NF1-C /FEA=mRNA /CNT=1 /TID=Rn.9646.1 /TIER=ConsEnd /STK=0 /UG=Rn.9646 /LL=29228 /DEF=Rattus norvegicus mRNA for NF1-C2, partial cds. /PROD=NF1-C2 AB012233 nuclear factor I/C Nfic 29228 NM_031567 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006260 // DNA replication // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007608 // sensory perception of smell // non-traceable author statement /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016481 // negative regulation of transcription // inferred from direct assay /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0010843 // promoter binding // inferred from direct assay /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded 1371177_a_at Y08769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y08769.1 /DB_XREF=gi:2292989 /GEN=mdg2 /FEA=mRNA /CNT=1 /TID=Rn.72627.2 /TIER=ConsEnd /STK=0 /UG=Rn.72627 /LL=29647 /DEF=R.norvegicus mRNA for microvascular endothelial differentiation gene 2. /PROD=microvascular endothelial differentiation gene2 Y08769 calcium/calmodulin-dependent serine protein kinase (MAGUK family) Cask 29647 NM_022184 0006461 // protein complex assembly // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0019717 // synaptosome // not recorded /// 0030425 // dendrite // inferred from direct assay /// 0043005 // neuron projection // inferred from physical interaction /// 0043234 // protein complex // inferred from direct assay /// 0045202 // synapse // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // traceable author statement /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // traceable author statement /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from mutant phenotype /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction /// 0042043 // neurexin binding // inferred from physical interaction /// 0045028 // purinergic nucleotide receptor activity, G-protein coupled // inferred from electronic annotation 1371178_at AJ011299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ011299.1 /DB_XREF=gi:4160562 /GEN=IL-5 /FEA=mRNA /CNT=1 /TID=Rn.44227.1 /TIER=ConsEnd /STK=0 /UG=Rn.44227 /LL=24497 /DEF=Rattus norvegicus mRNA for interleukin-5. /PROD=interleukin-5 AJ011299 interleukin 5 Il5 24497 NM_021834 0006954 // inflammatory response // inferred from expression pattern /// 0006955 // immune response // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0019221 // cytokine-mediated signaling pathway // inferred from direct assay /// 0019221 // cytokine-mediated signaling pathway // inferred from mutant phenotype /// 0030890 // positive regulation of B cell proliferation // inferred from direct assay /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0045645 // positive regulation of eosinophil differentiation // inferred from direct assay /// 0046427 // positive regulation of JAK-STAT cascade // inferred from mutant phenotype /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0051091 // positive regulation of transcription factor activity // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005625 // soluble fraction // inferred from direct assay 0005125 // cytokine activity // inferred from direct assay /// 0005125 // cytokine activity // inferred from mutant phenotype /// 0005125 // cytokine activity // not recorded /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005137 // interleukin-5 receptor binding // inferred from direct assay /// 0005137 // interleukin-5 receptor binding // inferred from mutant phenotype /// 0005137 // interleukin-5 receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation 1371179_a_at AJ312745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ312745.1 /DB_XREF=gi:13810296 /GEN=sKGF-R /FEA=mRNA /CNT=1 /TID=Rn.12732.5 /TIER=ConsEnd /STK=0 /UG=Rn.12732 /LL=25022 /DEF=Rattus norvegicus partial mRNA for soluble fibroblast growth factor receptor IIIb (sKGF-R gene). /PROD=soluble fibroblast growth factor receptor IIIb AJ312745 fibroblast growth factor receptor 2 Fgfr2 25022 NM_001109892 /// NM_001109893 /// NM_001109894 /// NM_001109895 /// NM_001109896 /// NM_012712 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001837 // epithelial to mesenchymal transition // inferred from direct assay /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0003148 // outflow tract septum morphogenesis // not recorded /// 0003148 // outflow tract septum morphogenesis // inferred from electronic annotation /// 0003149 // membranous septum morphogenesis // not recorded /// 0003149 // membranous septum morphogenesis // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from mutant phenotype /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0008589 // regulation of smoothened signaling pathway // not recorded /// 0008589 // regulation of smoothened signaling pathway // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009880 // embryonic pattern specification // not recorded /// 0009880 // embryonic pattern specification // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010453 // regulation of cell fate commitment // not recorded /// 0010453 // regulation of cell fate commitment // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // not recorded /// 0016331 // morphogenesis of embryonic epithelium // inferred from electronic annotation /// 0022612 // gland morphogenesis // not recorded /// 0022612 // gland morphogenesis // inferred from electronic annotation /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0030177 // positive regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030282 // bone mineralization // not recorded /// 0030282 // bone mineralization // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030901 // midbrain development // not recorded /// 0030901 // midbrain development // inferred from electronic annotation /// 0030916 // otic vesicle formation // not recorded /// 0030916 // otic vesicle formation // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // not recorded /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0032808 // lacrimal gland development // not recorded /// 0032808 // lacrimal gland development // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035265 // organ growth // not recorded /// 0035265 // organ growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040036 // regulation of fibroblast growth factor receptor signaling pathway // not recorded /// 0040036 // regulation of fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042476 // odontogenesis // not recorded /// 0042476 // odontogenesis // inferred from electronic annotation /// 0045165 // cell fate commitment // not recorded /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0048286 // lung alveolus development // not recorded /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048333 // mesodermal cell differentiation // inferred from expression pattern /// 0048557 // embryonic digestive tract morphogenesis // not recorded /// 0048557 // embryonic digestive tract morphogenesis // inferred from electronic annotation /// 0048562 // embryonic organ morphogenesis // not recorded /// 0048562 // embryonic organ morphogenesis // inferred from electronic annotation /// 0048565 // digestive tract development // not recorded /// 0048565 // digestive tract development // inferred from electronic annotation /// 0048568 // embryonic organ development // not recorded /// 0048568 // embryonic organ development // inferred from electronic annotation /// 0048608 // reproductive structure development // not recorded /// 0048608 // reproductive structure development // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0048730 // epidermis morphogenesis // not recorded /// 0048730 // epidermis morphogenesis // inferred from electronic annotation /// 0048755 // branching morphogenesis of a nerve // not recorded /// 0048755 // branching morphogenesis of a nerve // inferred from electronic annotation /// 0048762 // mesenchymal cell differentiation // not recorded /// 0048762 // mesenchymal cell differentiation // inferred from electronic annotation /// 0050673 // epithelial cell proliferation // not recorded /// 0050673 // epithelial cell proliferation // inferred from electronic annotation /// 0050678 // regulation of epithelial cell proliferation // not recorded /// 0050678 // regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // inferred from direct assay /// 0051150 // regulation of smooth muscle cell differentiation // not recorded /// 0051150 // regulation of smooth muscle cell differentiation // inferred from electronic annotation /// 0051781 // positive regulation of cell division // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0060045 // positive regulation of cardiac muscle cell proliferation // not recorded /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060174 // limb bud formation // not recorded /// 0060174 // limb bud formation // inferred from electronic annotation /// 0060348 // bone development // not recorded /// 0060348 // bone development // inferred from electronic annotation /// 0060349 // bone morphogenesis // not recorded /// 0060349 // bone morphogenesis // inferred from electronic annotation /// 0060442 // branching involved in prostate gland morphogenesis // not recorded /// 0060442 // branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // not recorded /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060449 // bud elongation involved in lung branching // not recorded /// 0060449 // bud elongation involved in lung branching // inferred from electronic annotation /// 0060463 // lung lobe morphogenesis // not recorded /// 0060463 // lung lobe morphogenesis // inferred from electronic annotation /// 0060484 // lung-associated mesenchyme development // not recorded /// 0060484 // lung-associated mesenchyme development // inferred from electronic annotation /// 0060501 // positive regulation of epithelial cell proliferation involved in lung morphogenesis // not recorded /// 0060501 // positive regulation of epithelial cell proliferation involved in lung morphogenesis // inferred from electronic annotation /// 0060512 // prostate gland morphogenesis // not recorded /// 0060512 // prostate gland morphogenesis // inferred from electronic annotation /// 0060523 // prostate epithelial cord elongation // not recorded /// 0060523 // prostate epithelial cord elongation // inferred from electronic annotation /// 0060527 // prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis // not recorded /// 0060527 // prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis // inferred from electronic annotation /// 0060529 // squamous basal epithelial stem cell differentiation involved in prostate gland acinus development // not recorded /// 0060529 // squamous basal epithelial stem cell differentiation involved in prostate gland acinus development // inferred from electronic annotation /// 0060595 // fibroblast growth factor receptor signaling pathway involved in mammary gland specification // not recorded /// 0060595 // fibroblast growth factor receptor signaling pathway involved in mammary gland specification // inferred from electronic annotation /// 0060601 // lateral sprouting from an epithelium // not recorded /// 0060601 // lateral sprouting from an epithelium // inferred from electronic annotation /// 0060615 // mammary gland bud formation // not recorded /// 0060615 // mammary gland bud formation // inferred from electronic annotation /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // not recorded /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060667 // branch elongation involved in salivary gland morphogenesis // not recorded /// 0060667 // branch elongation involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060670 // branching involved in embryonic placenta morphogenesis // not recorded /// 0060670 // branching involved in embryonic placenta morphogenesis // inferred from electronic annotation /// 0060687 // regulation of branching involved in prostate gland morphogenesis // not recorded /// 0060687 // regulation of branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0060688 // regulation of morphogenesis of a branching structure // not recorded /// 0060688 // regulation of morphogenesis of a branching structure // inferred from electronic annotation /// 0060915 // mesenchymal cell differentiation involved in lung development // not recorded /// 0060915 // mesenchymal cell differentiation involved in lung development // inferred from electronic annotation /// 0060916 // mesenchymal cell proliferation involved in lung development // not recorded /// 0060916 // mesenchymal cell proliferation involved in lung development // inferred from electronic annotation /// 0070372 // regulation of ERK1 and ERK2 cascade // not recorded /// 0070372 // regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0071445 // cellular response to protein stimulus // not recorded /// 0071445 // cellular response to protein stimulus // inferred from electronic annotation /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0005938 // cell cortex // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005007 // fibroblast growth factor receptor activity // inferred from electronic annotation /// 0005007 // fibroblast growth factor receptor activity // inferred from physical interaction /// 0005007 // fibroblast growth factor receptor activity // not recorded /// 0005007 // fibroblast growth factor receptor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // inferred from physical interaction /// 0017134 // fibroblast growth factor binding // not recorded /// 0017134 // fibroblast growth factor binding // inferred from electronic annotation /// 0048602 // fibroblast growth factor 1 binding // inferred from physical interaction 1371180_a_at Y18810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y18810.1 /DB_XREF=gi:5531394 /GEN=mGluR1b /FEA=mRNA /CNT=1 /TID=Rn.10261.2 /TIER=ConsEnd /STK=0 /UG=Rn.10261 /LL=24414 /DEF=Rattus norvegicus mRNA for metabotropic glutamate receptor type 1 (mGluR1b), partial. /PROD=metabotropic glutamate receptor type 1 Y18810 glutamate receptor, metabotropic 1 Grm1 24414 NM_001114330 /// NM_017011 0000186 // activation of MAPKK activity // inferred from electronic annotation /// 0000186 // activation of MAPKK activity // not recorded /// 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007206 // activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway // traceable author statement /// 0007268 // synaptic transmission // inferred from expression pattern /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0014048 // regulation of glutamate secretion // traceable author statement /// 0019233 // sensory perception of pain // inferred from expression pattern /// 0019233 // sensory perception of pain // not recorded /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from direct assay /// 0043408 // regulation of MAPKKK cascade // inferred from electronic annotation /// 0043408 // regulation of MAPKKK cascade // not recorded /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // traceable author statement /// 0051899 // membrane depolarization // traceable author statement /// 0051930 // regulation of sensory perception of pain // inferred from electronic annotation /// 0051930 // regulation of sensory perception of pain // not recorded /// 0051932 // synaptic transmission, GABAergic // traceable author statement /// 0051966 // regulation of synaptic transmission, glutamatergic // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // not recorded /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0001639 // PLC activating metabotropic glutamate receptor activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008066 // glutamate receptor activity // traceable author statement 1371181_x_at Y18810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y18810.1 /DB_XREF=gi:5531394 /GEN=mGluR1b /FEA=mRNA /CNT=1 /TID=Rn.10261.2 /TIER=ConsEnd /STK=0 /UG=Rn.10261 /LL=24414 /DEF=Rattus norvegicus mRNA for metabotropic glutamate receptor type 1 (mGluR1b), partial. /PROD=metabotropic glutamate receptor type 1 Y18810 glutamate receptor, metabotropic 1 Grm1 24414 NM_001114330 /// NM_017011 0000186 // activation of MAPKK activity // inferred from electronic annotation /// 0000186 // activation of MAPKK activity // not recorded /// 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007206 // activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway // traceable author statement /// 0007268 // synaptic transmission // inferred from expression pattern /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0014048 // regulation of glutamate secretion // traceable author statement /// 0019233 // sensory perception of pain // inferred from expression pattern /// 0019233 // sensory perception of pain // not recorded /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from direct assay /// 0043408 // regulation of MAPKKK cascade // inferred from electronic annotation /// 0043408 // regulation of MAPKKK cascade // not recorded /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // traceable author statement /// 0051899 // membrane depolarization // traceable author statement /// 0051930 // regulation of sensory perception of pain // inferred from electronic annotation /// 0051930 // regulation of sensory perception of pain // not recorded /// 0051932 // synaptic transmission, GABAergic // traceable author statement /// 0051966 // regulation of synaptic transmission, glutamatergic // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // not recorded /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0001639 // PLC activating metabotropic glutamate receptor activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008066 // glutamate receptor activity // traceable author statement 1371182_at M57705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M57705.1 /DB_XREF=gi:207325 /GEN=thyroid peroxidase /FEA=mRNA /CNT=1 /TID=Rn.37412.1 /TIER=ConsEnd /STK=0 /UG=Rn.37412 /DEF=Rat truncated thyroid peroxidase mRNA, 3 end. /PROD=truncated thyroid peroxidase M57705 Thyroid peroxidase Tpo 54314 NM_019353 0006590 // thyroid hormone generation // traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0042446 // hormone biosynthetic process // inferred from electronic annotation /// 0042744 // hydrogen peroxide catabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004447 // iodide peroxidase activity // traceable author statement /// 0004447 // iodide peroxidase activity // inferred from electronic annotation /// 0004601 // peroxidase activity // not recorded /// 0004601 // peroxidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371183_a_at U77090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U77090.1 /DB_XREF=gi:1710180 /GEN=SAP90 /FEA=mRNA /CNT=1 /TID=Rn.9765.2 /TIER=ConsEnd /STK=0 /UG=Rn.9765 /LL=29495 /DEF=Rattus norvegicus synapse-associated protein SAP90 mRNA, form 2, partial cds. /PROD=synapse-associated protein SAP90, form 2 U77090 discs, large homolog 4 (Drosophila) Dlg4 29495 NM_019621 0006950 // response to stress // non-traceable author statement /// 0016188 // synaptic vesicle maturation // inferred from electronic annotation /// 0016188 // synaptic vesicle maturation // not recorded /// 0045161 // neuronal ion channel clustering // traceable author statement /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0014069 // postsynaptic density // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0019717 // synaptosome // not recorded /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // not recorded /// 0030863 // cortical cytoskeleton // not recorded /// 0031234 // extrinsic to internal side of plasma membrane // inferred from electronic annotation /// 0031234 // extrinsic to internal side of plasma membrane // not recorded /// 0032281 // alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex // inferred from electronic annotation /// 0032281 // alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex // not recorded /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0045211 // postsynaptic membrane // not recorded /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // not recorded /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction 1371184_x_at AF053359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF053359.1 /DB_XREF=gi:3335509 /GEN=Tpm5 /FEA=mRNA /CNT=1 /TID=Rn.80155.1 /TIER=ConsEnd /STK=0 /UG=Rn.80155 /DEF=Rattus norvegicus nonmuscle tropomyosin 5 (Tpm5) isoforms NM 5 and NM 6 mRNA, partial cds. /PROD=nonmuscle tropomyosin 5 AF053359 tropomyosin 3, gamma Tpm3 117557 NM_057208 /// NM_173111 0007420 // brain development // inferred from expression pattern 0002102 // podosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1371185_at BF420621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420621 /DB_XREF=gi:11408610 /DB_XREF=UI-R-BJ2-bpy-b-10-0-UI.s1 /CLONE=UI-R-BJ2-bpy-b-10-0-UI /FEA=mRNA /CNT=4 /TID=Rn.62628.1 /TIER=ConsEnd /STK=0 /UG=Rn.62628 /LL=114517 /UG_GENE=Itga6 /UG_TITLE=integrin, alpha 6 BF420621 integrin, alpha 6 Itga6 114517 XM_001059353 /// XM_001059408 /// XM_002729169 /// XM_215984 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // inferred from mutant phenotype /// 0016337 // cell-cell adhesion // inferred from mutant phenotype /// 0022409 // positive regulation of cell-cell adhesion // inferred from electronic annotation /// 0022409 // positive regulation of cell-cell adhesion // not recorded /// 0031581 // hemidesmosome assembly // not recorded /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0031668 // cellular response to extracellular stimulus // not recorded /// 0033627 // cell adhesion mediated by integrin // inferred from electronic annotation /// 0033627 // cell adhesion mediated by integrin // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0046847 // filopodium assembly // inferred from electronic annotation /// 0046847 // filopodium assembly // not recorded /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded /// 0050900 // leukocyte migration // inferred from electronic annotation /// 0050900 // leukocyte migration // not recorded /// 0071407 // cellular response to organic cyclic substance // inferred from expression pattern 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0008305 // integrin complex // inferred from electronic annotation /// 0008305 // integrin complex // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0030175 // filopodium // inferred from direct assay /// 0034676 // alpha6-beta4 integrin complex // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0043236 // laminin binding // inferred from physical interaction 1371186_at AA955091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955091 /DB_XREF=gi:4238721 /DB_XREF=UI-R-A1-ez-f-06-0-UI.s2 /CLONE=UI-R-A1-ez-f-06-0-UI /FEA=mRNA /CNT=4 /TID=Rn.62628.1 /TIER=ConsEnd /STK=0 /UG=Rn.62628 /LL=114517 /UG_GENE=Itga6 /UG_TITLE=integrin, alpha 6 AA955091 integrin, alpha 6 Itga6 114517 XM_001059353 /// XM_001059408 /// XM_002729169 /// XM_215984 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // inferred from mutant phenotype /// 0016337 // cell-cell adhesion // inferred from mutant phenotype /// 0022409 // positive regulation of cell-cell adhesion // inferred from electronic annotation /// 0022409 // positive regulation of cell-cell adhesion // not recorded /// 0031581 // hemidesmosome assembly // not recorded /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0031668 // cellular response to extracellular stimulus // not recorded /// 0033627 // cell adhesion mediated by integrin // inferred from electronic annotation /// 0033627 // cell adhesion mediated by integrin // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0046847 // filopodium assembly // inferred from electronic annotation /// 0046847 // filopodium assembly // not recorded /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded /// 0050900 // leukocyte migration // inferred from electronic annotation /// 0050900 // leukocyte migration // not recorded /// 0071407 // cellular response to organic cyclic substance // inferred from expression pattern 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0008305 // integrin complex // inferred from electronic annotation /// 0008305 // integrin complex // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0030175 // filopodium // inferred from direct assay /// 0034676 // alpha6-beta4 integrin complex // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0043236 // laminin binding // inferred from physical interaction 1371187_a_at M61726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M61726.1 /DB_XREF=gi:207552 /FEA=mRNA /CNT=3 /TID=Rn.43231.1 /TIER=ConsEnd /STK=0 /UG=Rn.43231 /LL=25574 /UG_GENE=Ubtf /UG_TITLE=Transcription factor UBF /DEF=Rat transcription factor UBF1 mRNA. M61726 upstream binding transcription factor, RNA polymerase I Ubtf 25574 NM_001105723 /// NM_001127690 0000183 // chromatin silencing at rDNA // inferred from electronic annotation /// 0000183 // chromatin silencing at rDNA // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045943 // positive regulation of transcription from RNA polymerase I promoter // not recorded /// 0045943 // positive regulation of transcription from RNA polymerase I promoter // inferred from sequence or structural similarity /// 0045943 // positive regulation of transcription from RNA polymerase I promoter // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371188_a_at AI407688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407688 /DB_XREF=gi:4251192 /DB_XREF=EST235978 /CLONE=ROVEB07 /FEA=mRNA /CNT=3 /TID=Rn.43231.1 /TIER=ConsEnd /STK=0 /UG=Rn.43231 /LL=25574 /UG_GENE=Ubtf /UG_TITLE=Transcription factor UBF AI407688 upstream binding transcription factor, RNA polymerase I Ubtf 25574 NM_001105723 /// NM_001127690 0000183 // chromatin silencing at rDNA // inferred from electronic annotation /// 0000183 // chromatin silencing at rDNA // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045943 // positive regulation of transcription from RNA polymerase I promoter // not recorded /// 0045943 // positive regulation of transcription from RNA polymerase I promoter // inferred from sequence or structural similarity /// 0045943 // positive regulation of transcription from RNA polymerase I promoter // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371189_x_at BG153272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG153272 /DB_XREF=gi:12665302 /DB_XREF=nag11c07.x1 /CLONE=IMAGE:4175988 /FEA=mRNA /CNT=2 /TID=Rn.80101.1 /TIER=ConsEnd /STK=1 /UG=Rn.80101 /UG_TITLE=Rat laminin receptor mRNA, 3 end BG153272 ribosomal protein SA Rpsa 29236 NM_017138 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0016337 // cell-cell adhesion // inferred from direct assay /// 0030855 // epithelial cell differentiation // inferred from expression pattern 0005604 // basement membrane // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005055 // laminin receptor activity // traceable author statement /// 0005198 // structural molecule activity // inferred by curator /// 0043022 // ribosome binding // not recorded /// 0043236 // laminin binding // not recorded 1371190_at BG153272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG153272 /DB_XREF=gi:12665302 /DB_XREF=nag11c07.x1 /CLONE=IMAGE:4175988 /FEA=mRNA /CNT=2 /TID=Rn.80101.1 /TIER=ConsEnd /STK=0 /UG=Rn.80101 /UG_TITLE=Rat laminin receptor mRNA, 3 end BG153272 1371191_at U61772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U61772.1 /DB_XREF=gi:1432159 /GEN=NF2 /FEA=mRNA /CNT=2 /TID=Rn.10523.1 /TIER=ConsEnd /STK=0 /UG=Rn.10523 /LL=25744 /DEF=Rattus norvegicus merlin (NF2) mRNA, partial cds. /PROD=merlin U61772 neurofibromin 2 (merlin) Nf2 25744 NM_013193 0001707 // mesoderm formation // not recorded /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0007398 // ectoderm development // not recorded /// 0007398 // ectoderm development // inferred from electronic annotation /// 0008156 // negative regulation of DNA replication // not recorded /// 0008156 // negative regulation of DNA replication // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0014010 // Schwann cell proliferation // not recorded /// 0014010 // Schwann cell proliferation // inferred from electronic annotation /// 0022408 // negative regulation of cell-cell adhesion // not recorded /// 0022408 // negative regulation of cell-cell adhesion // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0030308 // negative regulation of cell growth // non-traceable author statement /// 0035330 // regulation of hippo signaling cascade // not recorded /// 0035330 // regulation of hippo signaling cascade // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042518 // negative regulation of tyrosine phosphorylation of Stat3 protein // not recorded /// 0042518 // negative regulation of tyrosine phosphorylation of Stat3 protein // inferred from electronic annotation /// 0042524 // negative regulation of tyrosine phosphorylation of Stat5 protein // not recorded /// 0042524 // negative regulation of tyrosine phosphorylation of Stat5 protein // inferred from electronic annotation /// 0043409 // negative regulation of MAPKKK cascade // not recorded /// 0043409 // negative regulation of MAPKKK cascade // inferred from electronic annotation /// 0045216 // cell-cell junction organization // not recorded /// 0045216 // cell-cell junction organization // inferred from electronic annotation /// 0046426 // negative regulation of JAK-STAT cascade // not recorded /// 0046426 // negative regulation of JAK-STAT cascade // inferred from electronic annotation /// 0051496 // positive regulation of stress fiber assembly // not recorded /// 0051496 // positive regulation of stress fiber assembly // inferred from electronic annotation /// 0070306 // lens fiber cell differentiation // not recorded /// 0070306 // lens fiber cell differentiation // inferred from electronic annotation 0001726 // ruffle // not recorded /// 0001726 // ruffle // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic to membrane // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030175 // filopodium // not recorded /// 0030175 // filopodium // inferred from electronic annotation /// 0032154 // cleavage furrow // not recorded /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045202 // synapse // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005178 // integrin binding // inferred from physical interaction /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction 1371192_at BF566236 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF566236 /DB_XREF=gi:11675966 /DB_XREF=UI-R-BT1-akb-c-03-0-UI.r1 /CLONE=UI-R-BT1-akb-c-03-0-UI /FEA=mRNA /CNT=2 /TID=Rn.10523.1 /TIER=ConsEnd /STK=0 /UG=Rn.10523 /LL=25744 /UG_GENE=Nf2 /UG_TITLE=Neurofibromatosis 2 BF566236 neurofibromin 2 (merlin) Nf2 25744 NM_013193 0001707 // mesoderm formation // not recorded /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0007398 // ectoderm development // not recorded /// 0007398 // ectoderm development // inferred from electronic annotation /// 0008156 // negative regulation of DNA replication // not recorded /// 0008156 // negative regulation of DNA replication // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0014010 // Schwann cell proliferation // not recorded /// 0014010 // Schwann cell proliferation // inferred from electronic annotation /// 0022408 // negative regulation of cell-cell adhesion // not recorded /// 0022408 // negative regulation of cell-cell adhesion // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0030308 // negative regulation of cell growth // non-traceable author statement /// 0035330 // regulation of hippo signaling cascade // not recorded /// 0035330 // regulation of hippo signaling cascade // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042518 // negative regulation of tyrosine phosphorylation of Stat3 protein // not recorded /// 0042518 // negative regulation of tyrosine phosphorylation of Stat3 protein // inferred from electronic annotation /// 0042524 // negative regulation of tyrosine phosphorylation of Stat5 protein // not recorded /// 0042524 // negative regulation of tyrosine phosphorylation of Stat5 protein // inferred from electronic annotation /// 0043409 // negative regulation of MAPKKK cascade // not recorded /// 0043409 // negative regulation of MAPKKK cascade // inferred from electronic annotation /// 0045216 // cell-cell junction organization // not recorded /// 0045216 // cell-cell junction organization // inferred from electronic annotation /// 0046426 // negative regulation of JAK-STAT cascade // not recorded /// 0046426 // negative regulation of JAK-STAT cascade // inferred from electronic annotation /// 0051496 // positive regulation of stress fiber assembly // not recorded /// 0051496 // positive regulation of stress fiber assembly // inferred from electronic annotation /// 0070306 // lens fiber cell differentiation // not recorded /// 0070306 // lens fiber cell differentiation // inferred from electronic annotation 0001726 // ruffle // not recorded /// 0001726 // ruffle // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic to membrane // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030175 // filopodium // not recorded /// 0030175 // filopodium // inferred from electronic annotation /// 0032154 // cleavage furrow // not recorded /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045202 // synapse // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005178 // integrin binding // inferred from physical interaction /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction 1371193_at BG664660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664660 /DB_XREF=gi:13886582 /DB_XREF=DRABGH03 /CLONE=DRABGH03 /FEA=mRNA /CNT=2 /TID=Rn.29885.1 /TIER=ConsEnd /STK=0 /UG=Rn.29885 /LL=84397 /UG_GENE=Tnfip6 /UG_TITLE=tumor necrosis factor induced protein 6 BG664660 tumor necrosis factor alpha induced protein 6 Tnfaip6 84397 NM_053382 0007155 // cell adhesion // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // inferred from electronic annotation 1371194_at AF159103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF159103.1 /DB_XREF=gi:5929901 /FEA=mRNA /CNT=2 /TID=Rn.29885.1 /TIER=ConsEnd /STK=0 /UG=Rn.29885 /LL=84397 /UG_GENE=Tnfip6 /DEF=Rattus norvegicus TNF-stimulated gene 6 protein mRNA, partial cds. /PROD=TNF-stimulated gene 6 protein AF159103 tumor necrosis factor alpha induced protein 6 Tnfaip6 84397 NM_053382 0007155 // cell adhesion // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // inferred from electronic annotation 1371195_at M23890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M23890.1 /DB_XREF=gi:207211 /FEA=mRNA /CNT=2 /TID=Rn.9951.1 /TIER=ConsEnd /STK=0 /UG=Rn.9951 /UG_TITLE=Rat T-cell receptor unproductive beta-chain mRNA V-region (V-D-J-C), clone CRTB320 /DEF=Rat T-cell receptor unproductive beta-chain mRNA V-region (V-D-J-C), clone CRTB320. M23890 1371196_at M23890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M23890.1 /DB_XREF=gi:207211 /FEA=mRNA /CNT=2 /TID=Rn.9951.1 /TIER=ConsEnd /STK=0 /UG=Rn.9951 /UG_TITLE=Rat T-cell receptor unproductive beta-chain mRNA V-region (V-D-J-C), clone CRTB320 /DEF=Rat T-cell receptor unproductive beta-chain mRNA V-region (V-D-J-C), clone CRTB320. M23890 1371197_at U48828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U48828.1 /DB_XREF=gi:1213335 /FEA=mRNA /CNT=1 /TID=Rn.25151.1 /TIER=ConsEnd /STK=0 /UG=Rn.25151 /UG_TITLE=Rattus norvegicus retroviral-like ovarian specific transcript 30-1 mRNA /DEF=Rattus norvegicus retroviral-like ovarian specific transcript 30-1 mRNA. U48828 1371198_at L26293 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L26293.1 /DB_XREF=gi:425470 /FEA=mRNA /CNT=1 /TID=Rn.10415.1 /TIER=ConsEnd /STK=0 /UG=Rn.10415 /UG_TITLE=Rattus norvegicus (clone 180) FSH-regulated protein mRNA /DEF=Rattus norvegicus (clone 180) FSH-regulated protein mRNA. L26293 1371199_at AJ249986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ249986.1 /DB_XREF=gi:6119708 /GEN=c3g /FEA=mRNA /CNT=1 /TID=Rn.49226.1 /TIER=ConsEnd /STK=0 /UG=Rn.49226 /LL=63881 /DEF=Rattus norvegicus partial mRNA for C3G protein (c3g gene). /PROD=C3G protein AJ249986 Rap guanine nucleotide exchange factor (GEF) 1 Rapgef1 63881 XM_001079347 /// XM_216018 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1371200_at M84202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M84202.1 /DB_XREF=gi:206915 /FEA=mRNA /CNT=1 /TID=Rn.9733.4 /TIER=ConsEnd /STK=0 /UG=Rn.9733 /UG_TITLE=Rattus norvegicus K+ channel protein (KSHIIIA3) mRNA, complete cds /DEF=Rattus norvegicus K+ channel protein (KSHIIIA2) mRNA, 3 end. M84202 potassium voltage gated channel, Shaw-related subfamily, member 2 Kcnc2 246153 NM_139216 /// NM_139217 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1371201_at L02915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L02915.1 /DB_XREF=gi:207013 /FEA=mRNA /CNT=1 /TID=Rn.42915.2 /TIER=ConsEnd /STK=0 /UG=Rn.42915 /LL=25033 /UG_GENE=Sstr1 /UG_TITLE=Somatostatin receptor subtype 1 /DEF=Rattus norvegicus mRNA fragment. L02915 somatostatin receptor 1 Sstr1 25033 NM_012719 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007215 // glutamate signaling pathway // not recorded /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007268 // synaptic transmission // not recorded /// 0007283 // spermatogenesis // inferred from expression pattern /// 0021549 // cerebellum development // inferred from expression pattern /// 0030217 // T cell differentiation // non-traceable author statement /// 0030900 // forebrain development // inferred from expression pattern /// 0042594 // response to starvation // inferred from expression pattern /// 0071392 // cellular response to estradiol stimulus // inferred from expression pattern 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004994 // somatostatin receptor activity // inferred from mutant phenotype /// 0004994 // somatostatin receptor activity // not recorded /// 0004994 // somatostatin receptor activity // inferred from electronic annotation 1371202_a_at AB012232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB012232.1 /DB_XREF=gi:2982731 /GEN=NF1-B /FEA=mRNA /CNT=1 /TID=Rn.9909.2 /TIER=ConsEnd /STK=0 /UG=Rn.9909 /LL=29227 /DEF=Rattus norvegicus mRNA for NF1-B3, partial cds. /PROD=NF1-B3 AB012232 nuclear factor I/B Nfib 29227 NM_031566 0006260 // DNA replication // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007608 // sensory perception of smell // non-traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016481 // negative regulation of transcription // traceable author statement /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0030902 // hindbrain development // inferred from electronic annotation /// 0030902 // hindbrain development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded 1371203_at AB020615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB020615.1 /DB_XREF=gi:4996215 /GEN=PKC lambda /FEA=mRNA /CNT=1 /TID=Rn.42887.1 /TIER=ConsEnd /STK=0 /UG=Rn.42887 /LL=84006 /UG_TITLE=protein kinase C, lambda /DEF=Rattus norvegicus PKC lambda mRNA, partial cds. AB020615 protein kinase C, iota Prkci 84006 NM_032059 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0007015 // actin filament organization // not recorded /// 0007015 // actin filament organization // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from mutant phenotype /// 0032869 // cellular response to insulin stimulus // not recorded /// 0035089 // establishment of apical/basal cell polarity // not recorded /// 0035089 // establishment of apical/basal cell polarity // inferred from electronic annotation /// 0042462 // eye photoreceptor cell development // not recorded /// 0042462 // eye photoreceptor cell development // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0045216 // cell-cell junction organization // not recorded /// 0046326 // positive regulation of glucose import // not recorded /// 0046326 // positive regulation of glucose import // inferred from electronic annotation /// 0048194 // Golgi vesicle budding // inferred from direct assay /// 0070555 // response to interleukin-1 // inferred from mutant phenotype /// 0090004 // positive regulation of establishment of protein localization in plasma membrane // not recorded /// 0090004 // positive regulation of establishment of protein localization in plasma membrane // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005923 // tight junction // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004697 // protein kinase C activity // not recorded /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005543 // phospholipid binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371204_at AF230638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF230638.1 /DB_XREF=gi:11228610 /FEA=mRNA /CNT=1 /TID=Rn.64623.1 /TIER=ConsEnd /STK=0 /UG=Rn.64623 /UG_TITLE=Rattus norvegicus UT-A urea transporter mRNA, 3 untranslated region, alternatively spliced /DEF=Rattus norvegicus UT-A urea transporter mRNA, 3 untranslated region, alternatively spliced. AF230638 Solute carrier family 14 (urea transporter), member 2 Slc14a2 54302 NM_001110270 /// NM_019347 /// NM_177962 0006810 // transport // inferred from electronic annotation /// 0009414 // response to water deprivation // inferred from expression pattern /// 0015840 // urea transport // inferred from electronic annotation /// 0015840 // urea transport // not recorded /// 0015840 // urea transport // non-traceable author statement /// 0055085 // transmembrane transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0015204 // urea transmembrane transporter activity // inferred from electronic annotation /// 0015204 // urea transmembrane transporter activity // not recorded /// 0015204 // urea transmembrane transporter activity // non-traceable author statement 1371205_at AF230638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF230638.1 /DB_XREF=gi:11228610 /FEA=mRNA /CNT=1 /TID=Rn.64623.1 /TIER=ConsEnd /STK=0 /UG=Rn.64623 /UG_TITLE=Rattus norvegicus UT-A urea transporter mRNA, 3 untranslated region, alternatively spliced /DEF=Rattus norvegicus UT-A urea transporter mRNA, 3 untranslated region, alternatively spliced. AF230638 Solute carrier family 14 (urea transporter), member 2 Slc14a2 54302 NM_001110270 /// NM_019347 /// NM_177962 0006810 // transport // inferred from electronic annotation /// 0009414 // response to water deprivation // inferred from expression pattern /// 0015840 // urea transport // inferred from electronic annotation /// 0015840 // urea transport // not recorded /// 0015840 // urea transport // non-traceable author statement /// 0055085 // transmembrane transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0015204 // urea transmembrane transporter activity // inferred from electronic annotation /// 0015204 // urea transmembrane transporter activity // not recorded /// 0015204 // urea transmembrane transporter activity // non-traceable author statement 1371206_a_at M17960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M17960.1 /DB_XREF=gi:204768 /FEA=mRNA /CNT=1 /TID=Rn.964.4 /TIER=ConsEnd /STK=0 /UG=Rn.964 /LL=24483 /UG_GENE=Igf2 /UG_TITLE=Insulin-like growth factor II (somatomedin A) /DEF=Rat insulin-like growth factor II (IGFII) mRNA, 5 flanking region. M17960 insulin-like growth factor 2 Igf2 24483 NM_001190162 /// NM_001190163 /// NM_031511 0001503 // ossification // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0009314 // response to radiation // inferred from expression pattern /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0031017 // exocrine pancreas development // inferred from electronic annotation /// 0031017 // exocrine pancreas development // not recorded /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0035094 // response to nicotine // inferred from expression pattern /// 0042493 // response to drug // inferred from direct assay /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0045840 // positive regulation of mitosis // inferred from electronic annotation /// 0045840 // positive regulation of mitosis // not recorded /// 0046628 // positive regulation of insulin receptor signaling pathway // inferred from electronic annotation /// 0046628 // positive regulation of insulin receptor signaling pathway // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling cascade // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation 0005158 // insulin receptor binding // inferred from electronic annotation /// 0005158 // insulin receptor binding // not recorded /// 0005159 // insulin-like growth factor receptor binding // inferred from electronic annotation /// 0005159 // insulin-like growth factor receptor binding // not recorded /// 0005179 // hormone activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // not recorded /// 0008083 // growth factor activity // traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation 1371207_at AF000898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF000898.1 /DB_XREF=gi:3941280 /GEN=p58p45 /FEA=mRNA /CNT=1 /TID=Rn.11099.4 /TIER=ConsEnd /STK=0 /UG=Rn.11099 /DEF=Rattus norvegicus p58p45 mRNA, alternatively spliced form, clone H6, partial cds. /PROD=p58p45 AF000898 nucleoporin like 1 Nupl1 245922 NM_139091 0006810 // transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005643 // nuclear pore // inferred from direct assay /// 0005643 // nuclear pore // non-traceable author statement /// 0005643 // nuclear pore // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0005487 // nucleocytoplasmic transporter activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1371208_at AF000898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF000898.1 /DB_XREF=gi:3941280 /GEN=p58p45 /FEA=mRNA /CNT=1 /TID=Rn.11099.4 /TIER=ConsEnd /STK=0 /UG=Rn.11099 /DEF=Rattus norvegicus p58p45 mRNA, alternatively spliced form, clone H6, partial cds. /PROD=p58p45 AF000898 nucleoporin like 1 Nupl1 245922 NM_139091 0006810 // transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005643 // nuclear pore // inferred from direct assay /// 0005643 // nuclear pore // non-traceable author statement /// 0005643 // nuclear pore // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0005487 // nucleocytoplasmic transporter activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1371209_at AJ243338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ243338.1 /DB_XREF=gi:5305187 /GEN=rt1-Eg /FEA=mRNA /CNT=1 /TID=Rn.39743.18 /TIER=ConsEnd /STK=0 /UG=Rn.39743 /LL=24737 /DEF=Rattus norvegicus mRNA for MHC class Ib molecule RT1-Eg (rt1-Eg gene). /PROD=RT1-Eg protein AJ243338 RT1 class I, locus CE5 RT1-CE5 309607 NM_001008843 /// NM_001033986 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 1371210_s_at AJ276126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ276126.3 /DB_XREF=gi:15626331 /GEN=rt1-El /FEA=mRNA /CNT=1 /TID=Rn.39743.20 /TIER=ConsEnd /STK=0 /UG=Rn.39743 /LL=24737 /DEF=Rattus norvegicus partial mRNA for RT1-El protein. /PROD=RT1-El protein AJ276126 RT1 class I, locus CE5 /// RT1 class Ib, locus EC2 RT1-CE5 /// RT1-EC2 24737 /// 309607 NM_001008843 /// NM_001033986 /// NM_012645 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from direct assay /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0002517 // T cell tolerance induction // inferred from mutant phenotype /// 0002657 // positive regulation of tolerance induction to nonself antigen // inferred from mutant phenotype /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0045953 // negative regulation of natural killer cell mediated cytotoxicity // inferred from mutant phenotype 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0030881 // beta-2-microglobulin binding // inferred from physical interaction /// 0042277 // peptide binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1371211_a_at U02315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U02315.1 /DB_XREF=gi:408380 /FEA=mRNA /CNT=1 /TID=Rn.37438.8 /TIER=ConsEnd /STK=0 /UG=Rn.37438 /LL=112400 /UG_GENE=Nrg1 /DEF=Rattus norvegicus clone ndf04 neu differentiation factor mRNA, partial cds. /PROD=neu differentiation factor U02315 neuregulin 1 Nrg1 112400 NM_031588 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000165 // MAPKKK cascade // not recorded /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007171 // activation of transmembrane receptor protein tyrosine kinase activity // not recorded /// 0007219 // Notch signaling pathway // not recorded /// 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007416 // synapse assembly // inferred from electronic annotation /// 0007416 // synapse assembly // not recorded /// 0007422 // peripheral nervous system development // inferred from electronic annotation /// 0007422 // peripheral nervous system development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007517 // muscle organ development // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008217 // regulation of blood pressure // inferred from expression pattern /// 0008283 // cell proliferation // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0010001 // glial cell differentiation // inferred from electronic annotation /// 0010001 // glial cell differentiation // not recorded /// 0010667 // negative regulation of cardiac muscle cell apoptosis // not recorded /// 0015758 // glucose transport // inferred from mutant phenotype /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030307 // positive regulation of cell growth // not recorded /// 0042060 // wound healing // not recorded /// 0042552 // myelination // inferred from expression pattern /// 0043497 // regulation of protein heterodimerization activity // not recorded /// 0043624 // cellular protein complex disassembly // not recorded /// 0045213 // neurotransmitter receptor metabolic process // inferred from electronic annotation /// 0045213 // neurotransmitter receptor metabolic process // not recorded /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // not recorded /// 0045785 // positive regulation of cell adhesion // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0051048 // negative regulation of secretion // not recorded /// 0051155 // positive regulation of striated muscle cell differentiation // not recorded /// 0055007 // cardiac muscle cell differentiation // not recorded /// 0055012 // ventricular cardiac muscle cell differentiation // not recorded /// 0060045 // positive regulation of cardiac muscle cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0003712 // transcription cofactor activity // not recorded /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005176 // ErbB-2 class receptor binding // inferred from electronic annotation /// 0005176 // ErbB-2 class receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0030296 // protein tyrosine kinase activator activity // not recorded /// 0043125 // ErbB-3 class receptor binding // inferred from mutant phenotype /// 0043125 // ErbB-3 class receptor binding // not recorded 1371212_at U02315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U02315.1 /DB_XREF=gi:408380 /FEA=mRNA /CNT=1 /TID=Rn.37438.8 /TIER=ConsEnd /STK=0 /UG=Rn.37438 /LL=112400 /UG_GENE=Nrg1 /DEF=Rattus norvegicus clone ndf04 neu differentiation factor mRNA, partial cds. /PROD=neu differentiation factor U02315 neuregulin 1 Nrg1 112400 NM_031588 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000165 // MAPKKK cascade // not recorded /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007171 // activation of transmembrane receptor protein tyrosine kinase activity // not recorded /// 0007219 // Notch signaling pathway // not recorded /// 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007416 // synapse assembly // inferred from electronic annotation /// 0007416 // synapse assembly // not recorded /// 0007422 // peripheral nervous system development // inferred from electronic annotation /// 0007422 // peripheral nervous system development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007517 // muscle organ development // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008217 // regulation of blood pressure // inferred from expression pattern /// 0008283 // cell proliferation // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0010001 // glial cell differentiation // inferred from electronic annotation /// 0010001 // glial cell differentiation // not recorded /// 0010667 // negative regulation of cardiac muscle cell apoptosis // not recorded /// 0015758 // glucose transport // inferred from mutant phenotype /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030307 // positive regulation of cell growth // not recorded /// 0042060 // wound healing // not recorded /// 0042552 // myelination // inferred from expression pattern /// 0043497 // regulation of protein heterodimerization activity // not recorded /// 0043624 // cellular protein complex disassembly // not recorded /// 0045213 // neurotransmitter receptor metabolic process // inferred from electronic annotation /// 0045213 // neurotransmitter receptor metabolic process // not recorded /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // not recorded /// 0045785 // positive regulation of cell adhesion // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0051048 // negative regulation of secretion // not recorded /// 0051155 // positive regulation of striated muscle cell differentiation // not recorded /// 0055007 // cardiac muscle cell differentiation // not recorded /// 0055012 // ventricular cardiac muscle cell differentiation // not recorded /// 0060045 // positive regulation of cardiac muscle cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0003712 // transcription cofactor activity // not recorded /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005176 // ErbB-2 class receptor binding // inferred from electronic annotation /// 0005176 // ErbB-2 class receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0030296 // protein tyrosine kinase activator activity // not recorded /// 0043125 // ErbB-3 class receptor binding // inferred from mutant phenotype /// 0043125 // ErbB-3 class receptor binding // not recorded 1371213_at AJ005023 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ005023.1 /DB_XREF=gi:3006073 /FEA=mRNA /CNT=1 /TID=Rn.39743.19 /TIER=ConsEnd /STK=0 /UG=Rn.39743 /LL=24737 /UG_GENE=RT1Aw2 /DEF=Rattus norvegicus mRNA for mature MHC class Ib alpha chain, clone cc9. /PROD=MHC class Ib alpha chain AJ005023 RT1 class I, locus A3 RT1-A3 309627 NM_001008830 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 1371214_at X74293 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X74293.1 /DB_XREF=gi:437910 /GEN=alpha 7 integrin /FEA=mRNA /CNT=1 /TID=Rn.54492.3 /TIER=ConsEnd /STK=0 /UG=Rn.54492 /LL=81008 /DEF=R.norvegicus mRNA for alpha 7A integrin. /PROD=alpha 7A integrin X74293 1371215_at L26010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L26010.1 /DB_XREF=gi:414816 /GEN=Futb /FEA=mRNA /CNT=1 /TID=Rn.74054.2 /TIER=ConsEnd /STK=0 /UG=Rn.74054 /LL=57299 /DEF=Rat alpha-1,2-fucosyltransferase (Futb) mRNA, 3 end. /PROD=alpha-1,2-fucosyltransferase L26010 fucosyltransferase 2 (secretor status included) Fut2 58924 NM_031635 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0006486 // protein glycosylation // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0008107 // galactoside 2-alpha-L-fucosyltransferase activity // inferred from direct assay /// 0008107 // galactoside 2-alpha-L-fucosyltransferase activity // not recorded /// 0008107 // galactoside 2-alpha-L-fucosyltransferase activity // inferred from electronic annotation /// 0008417 // fucosyltransferase activity // inferred from electronic annotation /// 0008417 // fucosyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1371216_s_at L26010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L26010.1 /DB_XREF=gi:414816 /GEN=Futb /FEA=mRNA /CNT=1 /TID=Rn.74054.2 /TIER=ConsEnd /STK=0 /UG=Rn.74054 /LL=57299 /DEF=Rat alpha-1,2-fucosyltransferase (Futb) mRNA, 3 end. /PROD=alpha-1,2-fucosyltransferase L26010 fucosyltransferase 2 (secretor status included) Fut2 58924 NM_031635 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0006486 // protein glycosylation // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0008107 // galactoside 2-alpha-L-fucosyltransferase activity // inferred from direct assay /// 0008107 // galactoside 2-alpha-L-fucosyltransferase activity // not recorded /// 0008107 // galactoside 2-alpha-L-fucosyltransferase activity // inferred from electronic annotation /// 0008417 // fucosyltransferase activity // inferred from electronic annotation /// 0008417 // fucosyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1371217_at AF311054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF311054.1 /DB_XREF=gi:12247525 /GEN=Apex /FEA=mRNA /CNT=1 /TID=Rn.5949.2 /TIER=ConsEnd /STK=0 /UG=Rn.5949 /LL=79116 /DEF=Rattus norvegicus APEX (Apex) mRNA, partial cds, alternatively spliced. /PROD=APEX AF311054 APEX nuclease (multifunctional DNA repair enzyme) 1 Apex1 79116 NM_024148 0006281 // DNA repair // non-traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007568 // aging // inferred from direct assay /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014912 // negative regulation of smooth muscle cell migration // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0045454 // cell redox homeostasis // not recorded /// 0045454 // cell redox homeostasis // non-traceable author statement /// 0045750 // positive regulation of S phase of mitotic cell cycle // inferred from mutant phenotype /// 0051101 // regulation of DNA binding // not recorded /// 0051591 // response to cAMP // inferred from expression pattern /// 0070301 // cellular response to hydrogen peroxide // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005813 // centrosome // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0003713 // transcription coactivator activity // inferred from sequence or structural similarity /// 0003906 // DNA-(apurinic or apyrimidinic site) lyase activity // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // not recorded /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004521 // endoribonuclease activity // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008081 // phosphoric diester hydrolase activity // not recorded /// 0016491 // oxidoreductase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from sequence or structural similarity /// 0016829 // lyase activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // traceable author statement /// 0032403 // protein complex binding // inferred from physical interaction /// 0046872 // metal ion binding // not recorded /// 0046872 // metal ion binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1371218_a_at AF194443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF194443.1 /DB_XREF=gi:11066047 /GEN=Nrg1 /FEA=mRNA /CNT=1 /TID=Rn.37438.9 /TIER=ConsEnd /STK=0 /UG=Rn.37438 /LL=112400 /DEF=Rattus norvegicus SMDF neuregulin beta 3 (Nrg1) mRNA, partial cds, alternatively spliced. /PROD=SMDF neuregulin beta 3 AF194443 neuregulin 1 Nrg1 112400 NM_031588 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000165 // MAPKKK cascade // not recorded /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007171 // activation of transmembrane receptor protein tyrosine kinase activity // not recorded /// 0007219 // Notch signaling pathway // not recorded /// 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007416 // synapse assembly // inferred from electronic annotation /// 0007416 // synapse assembly // not recorded /// 0007422 // peripheral nervous system development // inferred from electronic annotation /// 0007422 // peripheral nervous system development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007517 // muscle organ development // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008217 // regulation of blood pressure // inferred from expression pattern /// 0008283 // cell proliferation // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0010001 // glial cell differentiation // inferred from electronic annotation /// 0010001 // glial cell differentiation // not recorded /// 0010667 // negative regulation of cardiac muscle cell apoptosis // not recorded /// 0015758 // glucose transport // inferred from mutant phenotype /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030307 // positive regulation of cell growth // not recorded /// 0042060 // wound healing // not recorded /// 0042552 // myelination // inferred from expression pattern /// 0043497 // regulation of protein heterodimerization activity // not recorded /// 0043624 // cellular protein complex disassembly // not recorded /// 0045213 // neurotransmitter receptor metabolic process // inferred from electronic annotation /// 0045213 // neurotransmitter receptor metabolic process // not recorded /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // not recorded /// 0045785 // positive regulation of cell adhesion // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0051048 // negative regulation of secretion // not recorded /// 0051155 // positive regulation of striated muscle cell differentiation // not recorded /// 0055007 // cardiac muscle cell differentiation // not recorded /// 0055012 // ventricular cardiac muscle cell differentiation // not recorded /// 0060045 // positive regulation of cardiac muscle cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0003712 // transcription cofactor activity // not recorded /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005176 // ErbB-2 class receptor binding // inferred from electronic annotation /// 0005176 // ErbB-2 class receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0030296 // protein tyrosine kinase activator activity // not recorded /// 0043125 // ErbB-3 class receptor binding // inferred from mutant phenotype /// 0043125 // ErbB-3 class receptor binding // not recorded 1371219_a_at AF328797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF328797.1 /DB_XREF=gi:13604196 /GEN=PDE1C /FEA=mRNA /CNT=1 /TID=Rn.10289.3 /TIER=ConsEnd /STK=0 /UG=Rn.10289 /LL=81742 /DEF=Rattus norvegicus clone 9 phosphodiesterase 1C (PDE1C) mRNA, partial cds. /PROD=phosphodiesterase 1C AF328797 1371220_at AF053095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF053095.1 /DB_XREF=gi:3366796 /FEA=mRNA /CNT=1 /TID=Rn.29994.1 /TIER=ConsEnd /STK=0 /UG=Rn.29994 /LL=58933 /UG_GENE=Osi /DEF=Rattus norvegicus induced oxidative stress-like protein mRNA, partial cds. /PROD=induced oxidative stress-like protein AF053095 sequestosome 1 Sqstm1 113894 NM_175843 /// NM_181550 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0016236 // macroautophagy // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0043122 // regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043122 // regulation of I-kappaB kinase/NF-kappaB cascade // inferred from sequence or structural similarity /// 0051291 // protein heterooligomerization // inferred from physical interaction 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005080 // protein kinase C binding // inferred from direct assay /// 0005080 // protein kinase C binding // not recorded /// 0005080 // protein kinase C binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0042169 // SH2 domain binding // not recorded /// 0042169 // SH2 domain binding // inferred from sequence or structural similarity /// 0043130 // ubiquitin binding // not recorded /// 0043130 // ubiquitin binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1371221_at AF053095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF053095.1 /DB_XREF=gi:3366796 /FEA=mRNA /CNT=1 /TID=Rn.29994.1 /TIER=ConsEnd /STK=0 /UG=Rn.29994 /LL=58933 /UG_GENE=Osi /DEF=Rattus norvegicus induced oxidative stress-like protein mRNA, partial cds. /PROD=induced oxidative stress-like protein AF053095 sequestosome 1 Sqstm1 113894 NM_175843 /// NM_181550 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0016236 // macroautophagy // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0043122 // regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043122 // regulation of I-kappaB kinase/NF-kappaB cascade // inferred from sequence or structural similarity /// 0051291 // protein heterooligomerization // inferred from physical interaction 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005080 // protein kinase C binding // inferred from direct assay /// 0005080 // protein kinase C binding // not recorded /// 0005080 // protein kinase C binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0042169 // SH2 domain binding // not recorded /// 0042169 // SH2 domain binding // inferred from sequence or structural similarity /// 0043130 // ubiquitin binding // not recorded /// 0043130 // ubiquitin binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1371222_at AF304191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF304191.1 /DB_XREF=gi:10764822 /FEA=mRNA /CNT=1 /TID=Rn.9891.4 /TIER=ConsEnd /STK=0 /UG=Rn.9891 /LL=24536 /UG_GENE=Lepr /DEF=Rattus norvegicus leptin receptor OB-Ra mRNA, partial cds. /PROD=leptin receptor OB-Ra AF304191 leptin receptor Lepr 24536 NM_012596 0001525 // angiogenesis // inferred from mutant phenotype /// 0001542 // ovulation from ovarian follicle // inferred from expression pattern /// 0006091 // generation of precursor metabolites and energy // non-traceable author statement /// 0007565 // female pregnancy // inferred from expression pattern /// 0008203 // cholesterol metabolic process // not recorded /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0031669 // cellular response to nutrient levels // inferred from expression pattern /// 0033210 // leptin-mediated signaling pathway // inferred from direct assay /// 0035094 // response to nicotine // inferred from expression pattern /// 0042221 // response to chemical stimulus // inferred from expression pattern /// 0042755 // eating behavior // inferred from mutant phenotype /// 0043410 // positive regulation of MAPKKK cascade // inferred from direct assay /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0051346 // negative regulation of hydrolase activity // not recorded /// 0051346 // negative regulation of hydrolase activity // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016500 // protein-hormone receptor activity // inferred from direct assay /// 0016500 // protein-hormone receptor activity // inferred from mutant phenotype /// 0017046 // peptide hormone binding // inferred from direct assay /// 0017046 // peptide hormone binding // inferred from mutant phenotype 1371223_a_at AF304191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF304191.1 /DB_XREF=gi:10764822 /FEA=mRNA /CNT=1 /TID=Rn.9891.4 /TIER=ConsEnd /STK=0 /UG=Rn.9891 /LL=24536 /UG_GENE=Lepr /DEF=Rattus norvegicus leptin receptor OB-Ra mRNA, partial cds. /PROD=leptin receptor OB-Ra AF304191 leptin receptor Lepr 24536 NM_012596 0001525 // angiogenesis // inferred from mutant phenotype /// 0001542 // ovulation from ovarian follicle // inferred from expression pattern /// 0006091 // generation of precursor metabolites and energy // non-traceable author statement /// 0007565 // female pregnancy // inferred from expression pattern /// 0008203 // cholesterol metabolic process // not recorded /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0031669 // cellular response to nutrient levels // inferred from expression pattern /// 0033210 // leptin-mediated signaling pathway // inferred from direct assay /// 0035094 // response to nicotine // inferred from expression pattern /// 0042221 // response to chemical stimulus // inferred from expression pattern /// 0042755 // eating behavior // inferred from mutant phenotype /// 0043410 // positive regulation of MAPKKK cascade // inferred from direct assay /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0051346 // negative regulation of hydrolase activity // not recorded /// 0051346 // negative regulation of hydrolase activity // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016500 // protein-hormone receptor activity // inferred from direct assay /// 0016500 // protein-hormone receptor activity // inferred from mutant phenotype /// 0017046 // peptide hormone binding // inferred from direct assay /// 0017046 // peptide hormone binding // inferred from mutant phenotype 1371224_a_at AF195789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF195789.1 /DB_XREF=gi:11066168 /GEN=Drp2 /FEA=mRNA /CNT=1 /TID=Rn.64510.3 /TIER=ConsEnd /STK=0 /UG=Rn.64510 /LL=66027 /DEF=Rattus norvegicus dystrophin-related protein 2 splice variant (Drp2) mRNA, partial cds. /PROD=dystrophin-related protein 2 splice variant AF195789 dystrophin related protein 2 Drp2 66027 NM_023971 0050808 // synapse organization // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0030425 // dendrite // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371225_at AF195789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF195789.1 /DB_XREF=gi:11066168 /GEN=Drp2 /FEA=mRNA /CNT=1 /TID=Rn.64510.3 /TIER=ConsEnd /STK=0 /UG=Rn.64510 /LL=66027 /DEF=Rattus norvegicus dystrophin-related protein 2 splice variant (Drp2) mRNA, partial cds. /PROD=dystrophin-related protein 2 splice variant AF195789 dystrophin related protein 2 Drp2 66027 NM_023971 0050808 // synapse organization // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0030425 // dendrite // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371226_at AF305418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF305418.1 /DB_XREF=gi:10444515 /FEA=mRNA /CNT=1 /TID=Rn.10124.2 /TIER=ConsEnd /STK=0 /UG=Rn.10124 /LL=25412 /UG_GENE=Col2a1 /DEF=Rattus norvegicus type II collagen mRNA, partial cds. /PROD=type II collagen AF305418 collagen, type II, alpha 1 Col2a1 25412 NM_012929 0001501 // skeletal system development // not recorded /// 0001502 // cartilage condensation // not recorded /// 0001894 // tissue homeostasis // not recorded /// 0001958 // endochondral ossification // not recorded /// 0002062 // chondrocyte differentiation // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0006029 // proteoglycan metabolic process // not recorded /// 0007601 // visual perception // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0030199 // collagen fibril organization // not recorded /// 0035108 // limb morphogenesis // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0048705 // skeletal system morphogenesis // not recorded /// 0048839 // inner ear development // not recorded /// 0051216 // cartilage development // inferred from expression pattern /// 0051216 // cartilage development // not recorded /// 0060021 // palate development // not recorded /// 0060272 // embryonic skeletal joint morphogenesis // not recorded /// 0060348 // bone development // not recorded /// 0060351 // cartilage development involved in endochondral bone morphogenesis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005581 // collagen // inferred from electronic annotation /// 0005581 // collagen // not recorded /// 0005585 // collagen type II // not recorded /// 0005585 // collagen type II // traceable author statement /// 0005604 // basement membrane // not recorded /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // not recorded /// 0031012 // extracellular matrix // not recorded 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // traceable author statement /// 0048407 // platelet-derived growth factor binding // not recorded 1371227_at U00620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U00620.1 /DB_XREF=gi:392779 /FEA=mRNA /CNT=1 /TID=Rn.44285.1 /TIER=ConsEnd /STK=0 /UG=Rn.44285 /LL=116630 /UG_GENE=Csf2 /DEF=Rattus norvegicus granulocyte-macrophage colony stimulating factor (GM-CSF) mRNA, partial cds. /PROD=granulocyte-macrophage colony stimulatingfactor U00620 colony stimulating factor 2 (granulocyte-macrophage) Csf2 116630 XM_001074265 /// XM_340799 0001892 // embryonic placenta development // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010744 // positive regulation of macrophage derived foam cell differentiation // inferred from electronic annotation /// 0010744 // positive regulation of macrophage derived foam cell differentiation // not recorded /// 0042045 // epithelial fluid transport // inferred from direct assay /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042523 // positive regulation of tyrosine phosphorylation of Stat5 protein // inferred from electronic annotation /// 0042523 // positive regulation of tyrosine phosphorylation of Stat5 protein // not recorded /// 0043011 // myeloid dendritic cell differentiation // inferred from electronic annotation /// 0043011 // myeloid dendritic cell differentiation // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045651 // positive regulation of macrophage differentiation // traceable author statement /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // not recorded /// 0045885 // positive regulation of survival gene product expression // inferred from electronic annotation /// 0045885 // positive regulation of survival gene product expression // not recorded /// 0045918 // negative regulation of cytolysis // inferred from electronic annotation /// 0045918 // negative regulation of cytolysis // not recorded /// 0050673 // epithelial cell proliferation // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005129 // granulocyte macrophage colony-stimulating factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation 1371228_at U00620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U00620.1 /DB_XREF=gi:392779 /FEA=mRNA /CNT=1 /TID=Rn.44285.1 /TIER=ConsEnd /STK=0 /UG=Rn.44285 /LL=116630 /UG_GENE=Csf2 /DEF=Rattus norvegicus granulocyte-macrophage colony stimulating factor (GM-CSF) mRNA, partial cds. /PROD=granulocyte-macrophage colony stimulatingfactor U00620 colony stimulating factor 2 (granulocyte-macrophage) Csf2 116630 XM_001074265 /// XM_340799 0001892 // embryonic placenta development // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010744 // positive regulation of macrophage derived foam cell differentiation // inferred from electronic annotation /// 0010744 // positive regulation of macrophage derived foam cell differentiation // not recorded /// 0042045 // epithelial fluid transport // inferred from direct assay /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042523 // positive regulation of tyrosine phosphorylation of Stat5 protein // inferred from electronic annotation /// 0042523 // positive regulation of tyrosine phosphorylation of Stat5 protein // not recorded /// 0043011 // myeloid dendritic cell differentiation // inferred from electronic annotation /// 0043011 // myeloid dendritic cell differentiation // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045651 // positive regulation of macrophage differentiation // traceable author statement /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // not recorded /// 0045885 // positive regulation of survival gene product expression // inferred from electronic annotation /// 0045885 // positive regulation of survival gene product expression // not recorded /// 0045918 // negative regulation of cytolysis // inferred from electronic annotation /// 0045918 // negative regulation of cytolysis // not recorded /// 0050673 // epithelial cell proliferation // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005129 // granulocyte macrophage colony-stimulating factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation 1371229_at M35300 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M35300.1 /DB_XREF=gi:206470 /FEA=mRNA /CNT=1 /TID=Rn.9767.2 /TIER=ConsEnd /STK=0 /UG=Rn.9767 /LL=24833 /UG_GENE=Spink1 /UG_TITLE=Serine protease inhibitor, kanzal type 1 Trypsin inhibitor-like protein, pancreatic /DEF=Rat pancreatic secretory trypsin inhibitor-like protein (PSTI) mRNA, 3 end. M35300 ATPase inhibitory factor 1 Atpif1 25392 NM_012915 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0001937 // negative regulation of endothelial cell proliferation // inferred from sequence or structural similarity /// 0045861 // negative regulation of proteolysis // inferred from mutant phenotype /// 0045980 // negative regulation of nucleotide metabolic process // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from sequence or structural similarity /// 0051289 // protein homotetramerization // inferred from sequence or structural similarity /// 0051346 // negative regulation of hydrolase activity // not recorded /// 0051346 // negative regulation of hydrolase activity // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005753 // mitochondrial proton-transporting ATP synthase complex // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from sequence or structural similarity 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from sequence or structural similarity /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0042030 // ATPase inhibitor activity // inferred from direct assay /// 0042030 // ATPase inhibitor activity // not recorded /// 0042030 // ATPase inhibitor activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0043532 // angiostatin binding // not recorded /// 0043532 // angiostatin binding // inferred from sequence or structural similarity /// 0051117 // ATPase binding // not recorded /// 0051117 // ATPase binding // inferred from sequence or structural similarity 1371230_x_at M35300 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M35300.1 /DB_XREF=gi:206470 /FEA=mRNA /CNT=1 /TID=Rn.9767.2 /TIER=ConsEnd /STK=0 /UG=Rn.9767 /LL=24833 /UG_GENE=Spink1 /UG_TITLE=Serine protease inhibitor, kanzal type 1 Trypsin inhibitor-like protein, pancreatic /DEF=Rat pancreatic secretory trypsin inhibitor-like protein (PSTI) mRNA, 3 end. M35300 ATPase inhibitory factor 1 Atpif1 25392 NM_012915 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0001937 // negative regulation of endothelial cell proliferation // inferred from sequence or structural similarity /// 0045861 // negative regulation of proteolysis // inferred from mutant phenotype /// 0045980 // negative regulation of nucleotide metabolic process // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from sequence or structural similarity /// 0051289 // protein homotetramerization // inferred from sequence or structural similarity /// 0051346 // negative regulation of hydrolase activity // not recorded /// 0051346 // negative regulation of hydrolase activity // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005753 // mitochondrial proton-transporting ATP synthase complex // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from sequence or structural similarity 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from sequence or structural similarity /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0042030 // ATPase inhibitor activity // inferred from direct assay /// 0042030 // ATPase inhibitor activity // not recorded /// 0042030 // ATPase inhibitor activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0043532 // angiostatin binding // not recorded /// 0043532 // angiostatin binding // inferred from sequence or structural similarity /// 0051117 // ATPase binding // not recorded /// 0051117 // ATPase binding // inferred from sequence or structural similarity 1371231_at AJ242018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ242018.1 /DB_XREF=gi:4808330 /GEN=sptbn1 /FEA=mRNA /CNT=1 /TID=Rn.42873.1 /TIER=ConsEnd /STK=0 /UG=Rn.42873 /LL=59306 /DEF=Rattus norvegicus mRNA for short form of beta II spectrin, partial. /PROD=beta II spectrin AJ242018 spectrin, beta, non-erythrocytic 1 Sptbn1 305614 NM_001013130 0007182 // common-partner SMAD protein phosphorylation // not recorded /// 0007182 // common-partner SMAD protein phosphorylation // inferred from electronic annotation /// 0007184 // SMAD protein nuclear translocation // not recorded /// 0007184 // SMAD protein nuclear translocation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008091 // spectrin // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // not recorded /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0032437 // cuticular plate // not recorded /// 0032437 // cuticular plate // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1371232_a_at AF084544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF084544.1 /DB_XREF=gi:5730396 /FEA=mRNA /CNT=1 /TID=Rn.35666.3 /TIER=ConsEnd /STK=0 /UG=Rn.35666 /LL=114122 /UG_GENE=Cspg2 /DEF=Rattus norvegicus versican Vint isoform, mRNA, partial cds. /PROD=versican Vint isoform AF084544 versican Vcan 114122 NM_001170558 /// NM_001170559 /// NM_001170560 /// NM_053663 /// XM_001058357 /// XM_215451 0001657 // ureteric bud development // not recorded /// 0006928 // cellular component movement // traceable author statement /// 0007155 // cell adhesion // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0008347 // glial cell migration // inferred from electronic annotation /// 0008347 // glial cell migration // not recorded /// 0009611 // response to wounding // inferred from expression pattern /// 0031103 // axon regeneration // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // traceable author statement 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // traceable author statement /// 0005540 // hyaluronic acid binding // inferred from electronic annotation /// 0030169 // low-density lipoprotein binding // traceable author statement 1371233_at AF084544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF084544.1 /DB_XREF=gi:5730396 /FEA=mRNA /CNT=1 /TID=Rn.35666.3 /TIER=ConsEnd /STK=0 /UG=Rn.35666 /LL=114122 /UG_GENE=Cspg2 /DEF=Rattus norvegicus versican Vint isoform, mRNA, partial cds. /PROD=versican Vint isoform AF084544 versican Vcan 114122 NM_001170558 /// NM_001170559 /// NM_001170560 /// NM_053663 /// XM_001058357 /// XM_215451 0001657 // ureteric bud development // not recorded /// 0006928 // cellular component movement // traceable author statement /// 0007155 // cell adhesion // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0008347 // glial cell migration // inferred from electronic annotation /// 0008347 // glial cell migration // not recorded /// 0009611 // response to wounding // inferred from expression pattern /// 0031103 // axon regeneration // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // traceable author statement 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // traceable author statement /// 0005540 // hyaluronic acid binding // inferred from electronic annotation /// 0030169 // low-density lipoprotein binding // traceable author statement 1371234_at M35602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M35602.1 /DB_XREF=gi:204141 /FEA=mRNA /CNT=1 /TID=Rn.10923.1 /TIER=ConsEnd /STK=0 /UG=Rn.10923 /LL=24366 /UG_GENE=Fgb /UG_TITLE=Fibrinogen, B beta polypeptide /DEF=Rat beta-fibrinogen mRNA, 3 end. M35602 fibrinogen beta chain Fgb 24366 NM_020071 0007165 // signal transduction // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation /// 0030168 // platelet activation // inferred from electronic annotation /// 0042060 // wound healing // traceable author statement /// 0051258 // protein polymerization // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005577 // fibrinogen complex // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005938 // cell cortex // not recorded /// 0009897 // external side of plasma membrane // not recorded /// 0031091 // platelet alpha granule // not recorded /// 0031093 // platelet alpha granule lumen // not recorded 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030674 // protein binding, bridging // inferred from electronic annotation /// 0043499 // eukaryotic cell surface binding // not recorded /// 0051087 // chaperone binding // not recorded 1371235_at AJ245718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ245718.1 /DB_XREF=gi:9650873 /GEN=mglur6 /FEA=mRNA /CNT=1 /TID=Rn.44615.2 /TIER=ConsEnd /STK=0 /UG=Rn.44615 /LL=24419 /DEF=Rattus norvegicus partial mRNA for putative truncated metabotropic glutamate receptor type 6 (mglur6 gene). /PROD=putative truncated metabotropic glutamatereceptor type 6 AJ245718 glutamate receptor, metabotropic 6 Grm6 24419 NM_022920 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007196 // inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway // inferred from direct assay /// 0007268 // synaptic transmission // inferred from expression pattern /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050953 // sensory perception of light stimulus // inferred from electronic annotation /// 0050953 // sensory perception of light stimulus // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0001640 // adenylate cyclase inhibiting metabotropic glutamate receptor activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1371236_at AJ245718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ245718.1 /DB_XREF=gi:9650873 /GEN=mglur6 /FEA=mRNA /CNT=1 /TID=Rn.44615.2 /TIER=ConsEnd /STK=0 /UG=Rn.44615 /LL=24419 /DEF=Rattus norvegicus partial mRNA for putative truncated metabotropic glutamate receptor type 6 (mglur6 gene). /PROD=putative truncated metabotropic glutamatereceptor type 6 AJ245718 glutamate receptor, metabotropic 6 Grm6 24419 NM_022920 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007196 // inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway // inferred from direct assay /// 0007268 // synaptic transmission // inferred from expression pattern /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050953 // sensory perception of light stimulus // inferred from electronic annotation /// 0050953 // sensory perception of light stimulus // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0001640 // adenylate cyclase inhibiting metabotropic glutamate receptor activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1371237_a_at AF411318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF411318.1 /DB_XREF=gi:15705886 /FEA=mRNA /CNT=1 /TID=Rn.54397.1 /TIER=ConsEnd /STK=0 /UG=Rn.54397 /DEF=Rattus norvegicus metallothionein 1 mRNA, partial cds. /PROD=metallothionein 1 AF411318 metallothionein 1a Mt1a 24567 NM_138826 0006875 // cellular metal ion homeostasis // not recorded /// 0006882 // cellular zinc ion homeostasis // not recorded /// 0007263 // nitric oxide mediated signal transduction // not recorded /// 0010273 // detoxification of copper ion // not recorded 0005764 // lysosome // not recorded /// 0005829 // cytosol // not recorded 0005507 // copper ion binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // not recorded 1371238_at Y18809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y18809.1 /DB_XREF=gi:5531392 /GEN=mGluR1d /FEA=mRNA /CNT=1 /TID=Rn.10261.4 /TIER=ConsEnd /STK=0 /UG=Rn.10261 /LL=24414 /DEF=Rattus norvegicus mRNA for metabotropic glutamate receptor type 1 (mGluR1d), partial. /PROD=metabotropic glutamate receptor type 1 Y18809 glutamate receptor, metabotropic 1 Grm1 24414 NM_001114330 /// NM_017011 0000186 // activation of MAPKK activity // inferred from electronic annotation /// 0000186 // activation of MAPKK activity // not recorded /// 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007206 // activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway // traceable author statement /// 0007268 // synaptic transmission // inferred from expression pattern /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0014048 // regulation of glutamate secretion // traceable author statement /// 0019233 // sensory perception of pain // inferred from expression pattern /// 0019233 // sensory perception of pain // not recorded /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from direct assay /// 0043408 // regulation of MAPKKK cascade // inferred from electronic annotation /// 0043408 // regulation of MAPKKK cascade // not recorded /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // traceable author statement /// 0051899 // membrane depolarization // traceable author statement /// 0051930 // regulation of sensory perception of pain // inferred from electronic annotation /// 0051930 // regulation of sensory perception of pain // not recorded /// 0051932 // synaptic transmission, GABAergic // traceable author statement /// 0051966 // regulation of synaptic transmission, glutamatergic // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // not recorded /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0001639 // PLC activating metabotropic glutamate receptor activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008066 // glutamate receptor activity // traceable author statement 1371239_s_at AF053361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF053361.1 /DB_XREF=gi:3335513 /GEN=Tpm5 /FEA=mRNA /CNT=1 /TID=Rn.37575.3 /TIER=ConsEnd /STK=0 /UG=Rn.37575 /LL=117557 /DEF=Rattus norvegicus nonmuscle tropomyosin 5 (Tpm5) isoform NM 10 mRNA, partial cds. /PROD=nonmuscle tropomyosin 5 AF053361 tropomyosin 3, gamma Tpm3 117557 NM_057208 /// NM_173111 0007420 // brain development // inferred from expression pattern 0002102 // podosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1371240_at AF370889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF370889.1 /DB_XREF=gi:14134066 /FEA=mRNA /CNT=1 /TID=Rn.1033.8 /TIER=ConsEnd /STK=0 /UG=Rn.1033 /LL=24851 /UG_GENE=Tpm1 /DEF=Rattus norvegicus tropomyosin-alpha mRNA, partial cds; alternatively spliced. /PROD=tropomyosin-alpha AF370889 Tropomyosin 1, alpha Tpm1 24851 NM_001034068 /// NM_001034069 /// NM_001034070 /// NM_001034071 /// NM_001034072 /// NM_001034073 /// NM_001034074 /// NM_001034075 /// NM_019131 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006936 // muscle contraction // traceable author statement /// 0009790 // embryo development // inferred from electronic annotation /// 0030049 // muscle filament sliding // inferred from direct assay /// 0030336 // negative regulation of cell migration // inferred from genetic interaction /// 0031529 // ruffle organization // inferred from genetic interaction /// 0032781 // positive regulation of ATPase activity // inferred from mutant phenotype /// 0032781 // positive regulation of ATPase activity // inferred from direct assay /// 0042060 // wound healing // inferred from genetic interaction /// 0045785 // positive regulation of cell adhesion // inferred from genetic interaction /// 0051496 // positive regulation of stress fiber assembly // inferred from genetic interaction /// 0051693 // actin filament capping // inferred from direct assay /// 0060048 // cardiac muscle contraction // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030016 // myofibril // inferred from electronic annotation /// 0030018 // Z disc // inferred from mutant phenotype /// 0031941 // filamentous actin // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003779 // actin binding // inferred from mutant phenotype /// 0003779 // actin binding // traceable author statement /// 0003779 // actin binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from direct assay /// 0051015 // actin filament binding // inferred from mutant phenotype 1371241_x_at AF370889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF370889.1 /DB_XREF=gi:14134066 /FEA=mRNA /CNT=1 /TID=Rn.1033.8 /TIER=ConsEnd /STK=0 /UG=Rn.1033 /LL=24851 /UG_GENE=Tpm1 /DEF=Rattus norvegicus tropomyosin-alpha mRNA, partial cds; alternatively spliced. /PROD=tropomyosin-alpha AF370889 Tropomyosin 1, alpha Tpm1 24851 NM_001034068 /// NM_001034069 /// NM_001034070 /// NM_001034071 /// NM_001034072 /// NM_001034073 /// NM_001034074 /// NM_001034075 /// NM_019131 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006936 // muscle contraction // traceable author statement /// 0009790 // embryo development // inferred from electronic annotation /// 0030049 // muscle filament sliding // inferred from direct assay /// 0030336 // negative regulation of cell migration // inferred from genetic interaction /// 0031529 // ruffle organization // inferred from genetic interaction /// 0032781 // positive regulation of ATPase activity // inferred from mutant phenotype /// 0032781 // positive regulation of ATPase activity // inferred from direct assay /// 0042060 // wound healing // inferred from genetic interaction /// 0045785 // positive regulation of cell adhesion // inferred from genetic interaction /// 0051496 // positive regulation of stress fiber assembly // inferred from genetic interaction /// 0051693 // actin filament capping // inferred from direct assay /// 0060048 // cardiac muscle contraction // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030016 // myofibril // inferred from electronic annotation /// 0030018 // Z disc // inferred from mutant phenotype /// 0031941 // filamentous actin // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003779 // actin binding // inferred from mutant phenotype /// 0003779 // actin binding // traceable author statement /// 0003779 // actin binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from direct assay /// 0051015 // actin filament binding // inferred from mutant phenotype 1371242_at Y11153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y11153.1 /DB_XREF=gi:1841483 /GEN=mGluR8 /FEA=mRNA /CNT=1 /TID=Rn.42864.1 /TIER=ConsEnd /STK=0 /UG=Rn.42864 /DEF=R.norvegicus mRNA for metabotropic glutamate receptor subtype 8b, splice insertion. /PROD=metabotropic glutamate receptor subtype 8 Y11153 glutamate receptor, metabotropic 8 Grm8 60590 NM_022202 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007196 // inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway // not recorded /// 0007196 // inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway // traceable author statement /// 0007268 // synaptic transmission // inferred from direct assay /// 0007268 // synaptic transmission // non-traceable author statement /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0019233 // sensory perception of pain // traceable author statement /// 0030818 // negative regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0030818 // negative regulation of cAMP biosynthetic process // not recorded /// 0035249 // synaptic transmission, glutamatergic // inferred from direct assay /// 0043526 // neuroprotection // traceable author statement /// 0046928 // regulation of neurotransmitter secretion // inferred from direct assay /// 0050896 // response to stimulus // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045211 // postsynaptic membrane // traceable author statement 0001642 // group III metabotropic glutamate receptor activity // inferred from direct assay /// 0001642 // group III metabotropic glutamate receptor activity // not recorded /// 0001642 // group III metabotropic glutamate receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1371243_at Y11153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y11153.1 /DB_XREF=gi:1841483 /GEN=mGluR8 /FEA=mRNA /CNT=1 /TID=Rn.42864.1 /TIER=ConsEnd /STK=0 /UG=Rn.42864 /DEF=R.norvegicus mRNA for metabotropic glutamate receptor subtype 8b, splice insertion. /PROD=metabotropic glutamate receptor subtype 8 Y11153 glutamate receptor, metabotropic 8 Grm8 60590 NM_022202 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007196 // inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway // not recorded /// 0007196 // inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway // traceable author statement /// 0007268 // synaptic transmission // inferred from direct assay /// 0007268 // synaptic transmission // non-traceable author statement /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0019233 // sensory perception of pain // traceable author statement /// 0030818 // negative regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0030818 // negative regulation of cAMP biosynthetic process // not recorded /// 0035249 // synaptic transmission, glutamatergic // inferred from direct assay /// 0043526 // neuroprotection // traceable author statement /// 0046928 // regulation of neurotransmitter secretion // inferred from direct assay /// 0050896 // response to stimulus // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045211 // postsynaptic membrane // traceable author statement 0001642 // group III metabotropic glutamate receptor activity // inferred from direct assay /// 0001642 // group III metabotropic glutamate receptor activity // not recorded /// 0001642 // group III metabotropic glutamate receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1371244_at AI412934 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412934 /DB_XREF=gi:4256438 /DB_XREF=EST241234 /CLONE=RKIEG52 /FEA=DNA /CNT=38 /TID=Rn.2498.1 /TIER=Stack /STK=31 /UG=Rn.2498 /UG_TITLE=Rat adenine phosphoribosyltransferase (APRT) gene, complete cds AI412934 adenine phosphoribosyl transferase Aprt 292072 NM_001013061 0006166 // purine ribonucleoside salvage // inferred from electronic annotation /// 0006166 // purine ribonucleoside salvage // not recorded /// 0006168 // adenine salvage // inferred from electronic annotation /// 0006168 // adenine salvage // not recorded /// 0007595 // lactation // inferred from direct assay /// 0007625 // grooming behavior // not recorded /// 0008152 // metabolic process // not recorded /// 0009116 // nucleoside metabolic process // inferred from electronic annotation /// 0046083 // adenine metabolic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0002055 // adenine binding // not recorded /// 0003999 // adenine phosphoribosyltransferase activity // inferred from electronic annotation /// 0003999 // adenine phosphoribosyltransferase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016208 // AMP binding // inferred from direct assay /// 0016208 // AMP binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1371245_a_at BI287300 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287300 /DB_XREF=gi:14942782 /DB_XREF=UI-R-CS0s-cbn-c-05-0-UI.s1 /CLONE=UI-R-CS0s-cbn-c-05-0-UI /FEA=DNA /CNT=36 /TID=Rn.36966.3 /TIER=Stack /STK=27 /UG=Rn.36966 /LL=24440 /UG_GENE=Hbb /UG_TITLE=Hemoglobin, beta BI287300 beta-globin LOC689064 689064 NM_001111269 0006749 // glutathione metabolic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0015671 // oxygen transport // inferred from direct assay /// 0015671 // oxygen transport // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from direct assay 0005833 // hemoglobin complex // inferred from direct assay /// 0005833 // hemoglobin complex // inferred from electronic annotation 0005344 // oxygen transporter activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0019825 // oxygen binding // inferred from direct assay /// 0019825 // oxygen binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0031721 // hemoglobin alpha binding // inferred from direct assay /// 0031722 // hemoglobin beta binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1371246_at BE109988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109988 /DB_XREF=gi:8502093 /DB_XREF=UI-R-BJ1-aum-f-12-0-UI.s1 /CLONE=UI-R-BJ1-aum-f-12-0-UI /FEA=DNA /CNT=21 /TID=Rn.7345.1 /TIER=Stack /STK=11 /UG=Rn.7345 /UG_TITLE=R.norvegicus NTF2 gene BE109988 nuclear transport factor 2 Nutf2 291981 NM_001007629 0006606 // protein import into nucleus // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // not recorded 1371247_at BF521859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF521859 /DB_XREF=gi:11629826 /DB_XREF=UI-R-C2p-nq-h-04-0-UI.r1 /CLONE=UI-R-C2p-nq-h-04-0-UI /FEA=DNA_2 /CNT=56 /TID=Rn.22504.1 /TIER=Stack /STK=10 /UG=Rn.22504 /UG_TITLE=Rat fast skeletal TnT gene encoding troponin T isoforms, complete cds BF521859 troponin T type 3 (skeletal, fast) Tnnt3 24838 NM_031532 0003009 // skeletal muscle contraction // not recorded /// 0006936 // muscle contraction // traceable author statement /// 0006937 // regulation of muscle contraction // inferred from direct assay /// 0006942 // regulation of striated muscle contraction // inferred from mutant phenotype /// 0006942 // regulation of striated muscle contraction // not recorded /// 0043462 // regulation of ATPase activity // not recorded 0005861 // troponin complex // inferred from direct assay /// 0005861 // troponin complex // not recorded /// 0005861 // troponin complex // traceable author statement 0003779 // actin binding // not recorded /// 0005523 // tropomyosin binding // not recorded /// 0030172 // troponin C binding // not recorded /// 0030899 // calcium-dependent ATPase activity // not recorded /// 0031013 // troponin I binding // not recorded /// 0031014 // troponin T binding // non-traceable author statement /// 0048306 // calcium-dependent protein binding // not recorded 1371248_at BI286387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286387 /DB_XREF=gi:14940983 /DB_XREF=UI-R-DE0-cak-d-04-0-UI.s1 /CLONE=UI-R-DE0-cak-d-04-0-UI /FEA=DNA /CNT=13 /TID=Rn.14720.1 /TIER=Stack /STK=10 /UG=Rn.14720 /LL=60461 /UG_GENE=Sprr /UG_TITLE=small proline-rich protein gene BI286387 small proline-rich protein 1A-like Sprr1al 499660 XM_001056859 /// XM_574984 1371249_at BF417262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417262 /DB_XREF=gi:11405251 /DB_XREF=UI-R-CN0-blc-h-11-0-UI.s1 /CLONE=UI-R-CN0-blc-h-11-0-UI /FEA=DNA /CNT=23 /TID=Rn.13157.1 /TIER=Stack /STK=9 /UG=Rn.13157 /UG_TITLE=Rattus norvegicus gene for hepatocarcinogenesis-related transcription factor (HTF), complete cds BF417262 X-box binding protein 1 Xbp1 289754 NM_001004210 0002070 // epithelial cell maturation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from direct assay /// 0031017 // exocrine pancreas development // not recorded /// 0042493 // response to drug // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051602 // response to electrical stimulus // inferred from direct assay /// 0060096 // serotonin secretion, neurotransmission // inferred from direct assay /// 0060691 // epithelial cell maturation involved in salivary gland development // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1371250_at AI169104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169104 /DB_XREF=gi:3705412 /DB_XREF=EST214935 /CLONE=RKIBN18 /FEA=DNA /CNT=10 /TID=Rn.6800.1 /TIER=Stack /STK=7 /UG=Rn.6800 /UG_TITLE=Rat platelet factor 4 (PF4) gene AI169104 platelet factor 4 Pf4 360918 NM_001007729 0006461 // protein complex assembly // inferred from physical interaction /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006955 // immune response // inferred from direct assay /// 0006955 // immune response // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0010744 // positive regulation of macrophage derived foam cell differentiation // not recorded /// 0016525 // negative regulation of angiogenesis // not recorded /// 0016525 // negative regulation of angiogenesis // inferred from sequence or structural similarity /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from sequence or structural similarity /// 0030168 // platelet activation // not recorded /// 0030168 // platelet activation // inferred from sequence or structural similarity /// 0030595 // leukocyte chemotaxis // not recorded /// 0030595 // leukocyte chemotaxis // inferred from sequence or structural similarity /// 0032760 // positive regulation of tumor necrosis factor production // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0045347 // negative regulation of MHC class II biosynthetic process // not recorded /// 0045651 // positive regulation of macrophage differentiation // not recorded /// 0045653 // negative regulation of megakaryocyte differentiation // not recorded /// 0045653 // negative regulation of megakaryocyte differentiation // inferred from sequence or structural similarity /// 0045918 // negative regulation of cytolysis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0031091 // platelet alpha granule // inferred from direct assay /// 0031093 // platelet alpha granule lumen // not recorded /// 0031982 // vesicle // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annotation /// 0008201 // heparin binding // not recorded /// 0008201 // heparin binding // inferred from sequence or structural similarity /// 0008201 // heparin binding // inferred from electronic annotation 1371251_at L05541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L05541 /DB_XREF=gi:294559 /FEA=DNA /CNT=10 /TID=Rn.2832.1 /TIER=Stack /STK=6 /UG=Rn.2832 /UG_TITLE=Rattus norvegicus galactose-1-phosphate uridyltransferase gene, complete cds /DEF=Rattus norvegicus galactose-1-phosphate uridyltransferase gene, complete cds L05541 galactose-1-phosphate uridylyltransferase Galt 298003 NM_001013089 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006012 // galactose metabolic process // inferred from direct assay /// 0006012 // galactose metabolic process // not recorded /// 0006012 // galactose metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0019691 // UDP-glucose conversion // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005534 // galactose binding // inferred by curator /// 0005536 // glucose binding // inferred by curator /// 0008108 // UDP-glucose:hexose-1-phosphate uridylyltransferase activity // inferred from direct assay /// 0008108 // UDP-glucose:hexose-1-phosphate uridylyltransferase activity // not recorded /// 0008108 // UDP-glucose:hexose-1-phosphate uridylyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371252_at BE100794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100794 /DB_XREF=gi:8492692 /DB_XREF=UI-R-BJ1-auf-d-10-0-UI.s1 /CLONE=UI-R-BJ1-auf-d-10-0-UI /FEA=DNA /CNT=15 /TID=Rn.54782.1 /TIER=Stack /STK=8 /UG=Rn.54782 /UG_TITLE=Rattus norvegicus socs-1 gene for suppressor of cytokine signalling 1 BE100794 suppressor of cytokine signaling 1 Socs1 252971 NM_145879 0001932 // regulation of protein phosphorylation // inferred from electronic annotation /// 0001932 // regulation of protein phosphorylation // not recorded /// 0007259 // JAK-STAT cascade // not recorded /// 0007259 // JAK-STAT cascade // inferred from electronic annotation /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0040008 // regulation of growth // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042518 // negative regulation of tyrosine phosphorylation of Stat3 protein // inferred from electronic annotation /// 0042518 // negative regulation of tyrosine phosphorylation of Stat3 protein // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045444 // fat cell differentiation // not recorded /// 0046426 // negative regulation of JAK-STAT cascade // inferred from electronic annotation /// 0046426 // negative regulation of JAK-STAT cascade // not recorded /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from electronic annotation /// 0046627 // negative regulation of insulin receptor signaling pathway // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005159 // insulin-like growth factor receptor binding // inferred from electronic annotation /// 0005159 // insulin-like growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019210 // kinase inhibitor activity // inferred from electronic annotation /// 0019210 // kinase inhibitor activity // not recorded /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded 1371253_at AA942749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA942749 /DB_XREF=gi:3102665 /DB_XREF=EST198248 /CLONE=RBRAA61 /FEA=DNA /CNT=62 /TID=Rn.32496.1 /TIER=Stack /STK=7 /UG=Rn.32496 /UG_TITLE=Rat electron transfer flavoprotein (ETF) alpha-subunit DNA, 3 end AA942749 electron-transfer-flavoprotein, alpha polypeptide Etfa 300726 NM_001009668 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0009055 // electron carrier activity // not recorded /// 0009055 // electron carrier activity // non-traceable author statement /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // not recorded /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // not recorded 1371254_at AI179382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179382 /DB_XREF=gi:3730020 /DB_XREF=EST223082 /CLONE=RSPCG47 /FEA=DNA /CNT=102 /TID=Rn.2603.1 /TIER=Stack /STK=6 /UG=Rn.2603 /UG_TITLE=Rat Rieske iron-sulfur protein mRNA, complete cds AI179382 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 Uqcrfs1 291103 NM_001008888 0006810 // transport // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0022900 // electron transport chain // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0046677 // response to antibiotic // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005750 // mitochondrial respiratory chain complex III // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0045275 // respiratory chain complex III // traceable author statement /// 0070469 // respiratory chain // inferred from electronic annotation 0008121 // ubiquinol-cytochrome-c reductase activity // traceable author statement /// 0008121 // ubiquinol-cytochrome-c reductase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016679 // oxidoreductase activity, acting on diphenols and related substances as donors // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation 1371255_at BG379941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379941 /DB_XREF=gi:13304413 /DB_XREF=UI-R-CS0-bto-a-11-0-UI.s1 /CLONE=UI-R-CS0-bto-a-11-0-UI /FEA=DNA /CNT=7 /TID=Rn.34318.1 /TIER=ConsEnd /STK=5 /UG=Rn.34318 /UG_TITLE=Rat c-ras-H-1 gene, complete cds BG379941 Harvey rat sarcoma virus oncogene Hras 293621 NM_001098241 /// NM_001130441 0006897 // endocytosis // not recorded /// 0006915 // apoptosis // inferred from mutant phenotype /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // inferred from mutant phenotype /// 0007265 // Ras protein signal transduction // not recorded /// 0007569 // cell aging // not recorded /// 0008283 // cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0031575 // mitotic cell cycle G1/S transition checkpoint // inferred from electronic annotation /// 0031575 // mitotic cell cycle G1/S transition checkpoint // not recorded /// 0035176 // social behavior // inferred from expression pattern /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045740 // positive regulation of DNA replication // inferred from mutant phenotype /// 0045740 // positive regulation of DNA replication // not recorded /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // not recorded /// 0051291 // protein heterooligomerization // inferred from physical interaction /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded 1371256_at BM386565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386565 /DB_XREF=gi:18186618 /DB_XREF=UI-R-CN1-cjg-i-06-0-UI.s1 /CLONE=UI-R-CN1-cjg-i-06-0-UI /FEA=DNA /CNT=4 /TID=Rn.18651.1 /TIER=ConsEnd /STK=1 /UG=Rn.18651 /UG_TITLE=Rattus norvegicus protein tyrosine phosphatase 20 mRNA, complete cds BM386565 protein tyrosine phosphatase, non-receptor type 18 Ptpn18 301333 NM_001013111 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004726 // non-membrane spanning protein tyrosine phosphatase activity // not recorded /// 0004726 // non-membrane spanning protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1371257_at BF386897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386897 /DB_XREF=gi:11371721 /DB_XREF=UI-R-CA1-bbo-h-01-0-UI.s1 /CLONE=UI-R-CA1-bbo-h-01-0-UI /FEA=DNA /CNT=3 /TID=Rn.9853.1 /TIER=ConsEnd /STK=1 /UG=Rn.9853 /UG_TITLE=Rat transcription factor RZR-beta gene, 3 end of cds BF386897 RAR-related orphan receptor B Rorb 309288 XM_001079696 /// XM_002725710 /// XM_002728869 /// XM_219749 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0007601 // visual perception // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0042462 // eye photoreceptor cell development // not recorded /// 0042462 // eye photoreceptor cell development // inferred from sequence or structural similarity /// 0042462 // eye photoreceptor cell development // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from sequence or structural similarity /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008502 // melatonin receptor activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371258_at AA875097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875097 /DB_XREF=gi:4230978 /DB_XREF=UI-R-E0-cf-g-09-0-UI.s1 /CLONE=UI-R-E0-cf-g-09-0-UI /FEA=DNA_2 /CNT=9 /TID=Rn.5500.2 /TIER=ConsEnd /STK=0 /UG=Rn.5500 /LL=24365 /UG_GENE=Fga /UG_TITLE=Fibrinogen, A alpha polypeptide AA875097 fibrinogen alpha chain Fga 361969 NM_001008724 /// NM_052797 0007165 // signal transduction // inferred from electronic annotation /// 0007596 // blood coagulation // not recorded /// 0007596 // blood coagulation // traceable author statement /// 0007596 // blood coagulation // inferred from electronic annotation /// 0030168 // platelet activation // inferred from electronic annotation /// 0042246 // tissue regeneration // inferred from expression pattern /// 0051258 // protein polymerization // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005577 // fibrinogen complex // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005938 // cell cortex // not recorded /// 0009897 // external side of plasma membrane // not recorded /// 0031091 // platelet alpha granule // not recorded /// 0031093 // platelet alpha granule lumen // not recorded 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030674 // protein binding, bridging // inferred from electronic annotation /// 0043499 // eukaryotic cell surface binding // not recorded 1371259_at BM388972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388972 /DB_XREF=gi:18189025 /DB_XREF=UI-R-DZ0-ckn-d-20-0-UI.s1 /CLONE=UI-R-DZ0-ckn-d-20-0-UI /FEA=DNA /CNT=5 /TID=Rn.22168.1 /TIER=ConsEnd /STK=0 /UG=Rn.22168 /UG_TITLE=Rat beta-nerve growth factor gene, last exon BM388972 nerve growth factor (beta polypeptide) Ngf 310738 XM_001067130 /// XM_227525 0006915 // apoptosis // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0006954 // inflammatory response // inferred from expression pattern /// 0007165 // signal transduction // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0007422 // peripheral nervous system development // inferred from electronic annotation /// 0007422 // peripheral nervous system development // not recorded /// 0007613 // memory // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008344 // adult locomotory behavior // inferred from mutant phenotype /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0009314 // response to radiation // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0019233 // sensory perception of pain // not recorded /// 0030307 // positive regulation of cell growth // inferred from direct assay /// 0031175 // neuron projection development // inferred from direct assay /// 0032455 // nerve growth factor processing // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045664 // regulation of neuron differentiation // inferred from electronic annotation /// 0045664 // regulation of neuron differentiation // not recorded /// 0045773 // positive regulation of axon extension // inferred from electronic annotation /// 0045773 // positive regulation of axon extension // not recorded /// 0045786 // negative regulation of cell cycle // not recorded /// 0046928 // regulation of neurotransmitter secretion // inferred from electronic annotation /// 0046928 // regulation of neurotransmitter secretion // not recorded /// 0050770 // regulation of axonogenesis // not recorded /// 0050772 // positive regulation of axonogenesis // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051602 // response to electrical stimulus // inferred from expression pattern 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005768 // endosome // not recorded /// 0005788 // endoplasmic reticulum lumen // not recorded /// 0005796 // Golgi lumen // not recorded 0005057 // receptor signaling protein activity // inferred from electronic annotation /// 0005057 // receptor signaling protein activity // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005163 // nerve growth factor receptor binding // inferred from electronic annotation /// 0005163 // nerve growth factor receptor binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation 1371260_at AA957923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957923 /DB_XREF=gi:4277813 /DB_XREF=UI-R-E1-fv-c-11-0-UI.s1 /CLONE=UI-R-E1-fv-c-11-0-UI /FEA=DNA /CNT=4 /TID=Rn.9443.1 /TIER=ConsEnd /STK=0 /UG=Rn.9443 /LL=29266 /UG_GENE=Mcpt2 /UG_TITLE=mast cell protease 2 AA957923 mast cell protease 2 Mcpt2 29266 NM_172044 0006508 // proteolysis // inferred from electronic annotation 0005622 // intracellular // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1371261_at X92747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X92747 /DB_XREF=gi:1054838 /FEA=DNA /CNT=3 /TID=Rn.33497.2 /TIER=ConsEnd /STK=0 /UG=Rn.33497 /LL=117063 /UG_GENE=Ptpn2 /UG_TITLE=protein tyrosine phosphatase, non-receptor type 2 /DEF=R.norvegicus PTP-S gene X92747 protein tyrosine phosphatase, non-receptor type 2 Ptpn2 117063 NM_053990 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004726 // non-membrane spanning protein tyrosine phosphatase activity // inferred from direct assay /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1371262_at AJ391299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ391299 /DB_XREF=gi:6900877 /FEA=DNA /CNT=3 /TID=Rn.44840.1 /TIER=ConsEnd /STK=0 /UG=Rn.44840 /UG_TITLE=Rattus norvegicus partial IGHV gene for immunoglobulin heavy chain, clone M31-1 /DEF=Rattus norvegicus partial IGHV gene for immunoglobulin heavy chain, clone F32JH22 AJ391299 gamma-2a immunoglobulin heavy chain /// immunoglobulin heavy chain, alpha /// rCG21044-like /// hypothetical protein LOC100360329 /// hypothetical protein LOC100360822 /// rCG21035-like /// rCG21044-like /// mCG18165-like /// similar to Immunoglobulin heavy chain (gamma polypeptide) IgG-2a /// Igha /// LOC100360169 /// LOC100360329 /// LOC100360822 /// LOC100362271 /// LOC678969 /// LOC686380 /// RGD1565478 100360169 /// 100360329 /// 100360822 /// 100362271 /// 314487 /// 367586 /// 678969 /// 686380 /// 691714 XM_002726794 /// XM_002726796 /// XM_002727305 /// XM_002727307 /// XM_002727329 /// XM_002727371 /// XM_002729671 /// XM_002729676 /// XM_002729678 /// XM_002730140 /// XM_002730141 0003823 // antigen binding // inferred from electronic annotation 1371263_a_at X77194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X77194 /DB_XREF=gi:450927 /FEA=DNA /CNT=2 /TID=Rn.122.2 /TIER=ConsEnd /STK=0 /UG=Rn.122 /LL=24246 /UG_GENE=Camk2d /UG_TITLE=Ca++calmodulin-dependent protein kinase II, delta subunit /DEF=Rattus norvegicus CaM kinase II gene subtype delta 5 X77194 calcium/calmodulin-dependent protein kinase II delta Camk2d 24246 NM_012519 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0010389 // regulation of G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 0030007 // cellular potassium ion homeostasis // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0060048 // cardiac muscle contraction // not recorded /// 0060048 // cardiac muscle contraction // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005954 // calcium- and calmodulin-dependent protein kinase complex // traceable author statement /// 0030315 // T-tubule // not recorded /// 0030315 // T-tubule // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // not recorded /// 0031594 // neuromuscular junction // not recorded /// 0031594 // neuromuscular junction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from direct assay /// 0004683 // calmodulin-dependent protein kinase activity // inferred from mutant phenotype /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1371264_at X56327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X56327 /DB_XREF=gi:3367725 /FEA=DNA /CNT=2 /TID=Rn.44482.1 /TIER=ConsEnd /STK=0 /UG=Rn.44482 /UG_TITLE=R.norvegicus beta-hO-r gene for beta-globin chain /DEF=Rattus norvegicus epsilon 2 globin gene X56327 hemoglobin, epsilon 2 Hbe2 502359 NM_001024805 0006810 // transport // inferred from electronic annotation /// 0015671 // oxygen transport // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from direct assay 0005833 // hemoglobin complex // inferred from direct assay /// 0005833 // hemoglobin complex // inferred from electronic annotation 0005344 // oxygen transporter activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0019825 // oxygen binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from direct assay /// 0020037 // heme binding // inferred from electronic annotation /// 0031721 // hemoglobin alpha binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1371265_at X83264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X83264 /DB_XREF=gi:1477442 /FEA=DNA_1 /CNT=2 /TID=Rn.10535.1 /TIER=ConsEnd /STK=0 /UG=Rn.10535 /UG_TITLE=R.norvegicus vasopressin V2 receptor gene, promoter /DEF=R.norvegicus vasopressin V2 receptor gene, promoter X83264 1371266_at X76456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X76456 /DB_XREF=gi:456358 /FEA=DNA /CNT=1 /TID=Rn.32082.1 /TIER=ConsEnd /STK=0 /UG=Rn.32082 /UG_TITLE=R.norvegicus (Sprague Dawley) alpha albumin gene /DEF=R.norvegicus (Sprague Dawley) alpha albumin gene X76456 afamin Afm 282708 NM_172320 0006810 // transport // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation 1371267_at M64795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M64795 /DB_XREF=gi:205441 /FEA=DNA /CNT=1 /TID=Rn.44573.1 /TIER=ConsEnd /STK=0 /UG=Rn.44573 /LL=24735 /UG_GENE=RT1@ /UG_TITLE=Major histocompatibility locus /DEF=Rat MHC class I antigen gene (RT1-u haplotype), complete cds M64795 RT1 class I, locus CE11-like /// MHC class Ib alpha chain-like /// similar to RT1 class I, CE11 /// RT1 class Ia, locus A1 /// RT1 class I, locus A3 /// RT1 class I, locus1 /// RT1 class I, locus CE2 /// RT1 class I, locus CE3 /// RT1 class Ib, locus Cl /// RT1 class Ib, locus EC2 /// MHC class I RT1.Aa alpha-chain LOC100364500 /// LOC100364956 /// LOC683761 /// RT1-A1 /// RT1-A3 /// RT1-CE1 /// RT1-CE2 /// RT1-CE3 /// RT1-Cl /// RT1-EC2 /// Rt1.aa 100188935 /// 100364500 /// 100364956 /// 24737 /// 24973 /// 24977 /// 309603 /// 309627 /// 414779 /// 414793 /// 683761 NM_001008827 /// NM_001008830 /// NM_001008832 /// NM_001008840 /// NM_001008841 /// NM_001134701 /// NM_012645 /// NM_206848 /// XM_001053482 /// XM_002727379 /// XM_002727426 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from direct assay /// 0001916 // positive regulation of T cell mediated cytotoxicity // not recorded /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0002485 // antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent // not recorded /// 0002517 // T cell tolerance induction // inferred from mutant phenotype /// 0002657 // positive regulation of tolerance induction to nonself antigen // inferred from mutant phenotype /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // not recorded /// 0042742 // defense response to bacterium // not recorded /// 0045953 // negative regulation of natural killer cell mediated cytotoxicity // inferred from mutant phenotype 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0030881 // beta-2-microglobulin binding // inferred from physical interaction /// 0042277 // peptide binding // inferred from direct assay /// 0042605 // peptide antigen binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1371268_at U50949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U50949 /DB_XREF=gi:1256392 /FEA=DNA /CNT=1 /TID=Rn.44494.1 /TIER=ConsEnd /STK=0 /UG=Rn.44494 /UG_TITLE=Rattus norvegicus taste bud receptor protein TB 641 (TB 641) gene, complete cds /DEF=Rattus norvegicus taste bud receptor protein TB 641 (TB 641) gene, complete cds U50949 olfactory receptor 1641 Olr1641 290050 NM_001000100 0007186 // G-protein coupled receptor protein signaling pathway // inferred from reviewed computational analysis /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0050911 // detection of chemical stimulus involved in sensory perception of smell // inferred from reviewed computational analysis 0016021 // integral to membrane // inferred from reviewed computational analysis /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from reviewed computational analysis /// 0004984 // olfactory receptor activity // inferred from electronic annotation 1371269_at AF029357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF029357 /DB_XREF=gi:2570934 /FEA=DNA /CNT=1 /TID=Rn.44457.1 /TIER=ConsEnd /STK=0 /UG=Rn.44457 /UG_TITLE=Rattus norvegicus olfactory receptor-like protein gene, complete cds /DEF=Rattus norvegicus olfactory receptor-like protein gene, complete cds AF029357 olfactory receptor 857 Olr857 366456 NM_001000583 0007186 // G-protein coupled receptor protein signaling pathway // inferred from reviewed computational analysis /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0050911 // detection of chemical stimulus involved in sensory perception of smell // inferred from reviewed computational analysis 0016021 // integral to membrane // inferred from reviewed computational analysis /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from reviewed computational analysis /// 0004984 // olfactory receptor activity // inferred from electronic annotation 1371270_at U50948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U50948 /DB_XREF=gi:1256390 /FEA=DNA /CNT=1 /TID=Rn.44493.1 /TIER=ConsEnd /STK=0 /UG=Rn.44493 /UG_TITLE=Rattus norvegicus taste bud receptor protein TB 567 (TB 567) gene, complete cds /DEF=Rattus norvegicus taste bud receptor protein TB 567 (TB 567) gene, complete cds U50948 olfactory receptor 442 Olr442 295713 NM_001000284 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from reviewed computational analysis /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0050911 // detection of chemical stimulus involved in sensory perception of smell // inferred from reviewed computational analysis 0016021 // integral to membrane // inferred from reviewed computational analysis /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from reviewed computational analysis /// 0004984 // olfactory receptor activity // inferred from electronic annotation 1371271_at U50947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U50947 /DB_XREF=gi:1256388 /FEA=DNA /CNT=1 /TID=Rn.44492.1 /TIER=ConsEnd /STK=0 /UG=Rn.44492 /UG_TITLE=Rattus norvegicus taste bud receptor protein TB 334 (TB 334) gene, complete cds /DEF=Rattus norvegicus taste bud receptor protein TB 334 (TB 334) gene, complete cds U50947 olfactory receptor 416 Olr416 296678 NM_001000387 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from reviewed computational analysis /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0050911 // detection of chemical stimulus involved in sensory perception of smell // inferred from reviewed computational analysis 0016021 // integral to membrane // inferred from reviewed computational analysis /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from reviewed computational analysis /// 0004984 // olfactory receptor activity // inferred from electronic annotation 1371272_at U56824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U56824 /DB_XREF=gi:1354757 /FEA=DNA /CNT=1 /TID=Rn.10565.1 /TIER=ConsEnd /STK=0 /UG=Rn.10565 /UG_TITLE=Rattus norvegicus Ly-49.29 antigen mRNA, complete cds /DEF=Rattus norvegicus Ly-49.29 antigen mRNA, complete cds U56824 Ly49 stimulatory receptor 7 Ly49s7 494203 NM_001009494 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1371273_at D13556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D13556 /DB_XREF=gi:436580 /FEA=DNA /CNT=1 /TID=Rn.48664.1 /TIER=ConsEnd /STK=0 /UG=Rn.48664 /LL=56815 /UG_GENE=LOC56815 /UG_TITLE=gene for T cell receptor eta chain /DEF=Rattus norvegicus gene for T cell receptor eta chain, partial cds D13556 1371274_at M75281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M75281 /DB_XREF=gi:294537 /FEA=DNA /CNT=1 /TID=Rn.10908.1 /TIER=ConsEnd /STK=0 /UG=Rn.10908 /UG_TITLE=Rat cystatin S (CysS) gene, complete cds /DEF=Rat cystatin S (CysS) gene, complete cds M75281 cystatin S Cyss 296234 NM_198685 0001562 // response to protozoan // inferred from expression pattern /// 0001906 // cell killing // inferred from direct assay /// 0007431 // salivary gland development // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0009611 // response to wounding // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0010466 // negative regulation of peptidase activity // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0046677 // response to antibiotic // inferred from expression pattern /// 0046687 // response to chromate // inferred from expression pattern /// 0048468 // cell development // inferred from expression pattern /// 0048678 // response to axon injury // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay 0002020 // protease binding // inferred from direct assay /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from direct assay /// 0004869 // cysteine-type endopeptidase inhibitor activity // traceable author statement /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1371275_at X77818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X77818 /DB_XREF=gi:1563748 /FEA=DNA /CNT=1 /TID=Rn.10591.1 /TIER=ConsEnd /STK=0 /UG=Rn.10591 /UG_TITLE=R.norvegicus VCS-alpha3 gene /DEF=R.norvegicus VCS-alpha3 gene X77818 1371276_at U50356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U50356 /DB_XREF=gi:4090429 /FEA=DNA /CNT=1 /TID=Rn.42877.1 /TIER=ConsEnd /STK=0 /UG=Rn.42877 /UG_TITLE=Rattus norvegicus neutrophil defensin pseudogene, partial cds /DEF=Rattus norvegicus neutrophil defensin pseudogene, partial cds U50356 defensin alpha 7 Defa7 613222 NM_001033075 0006952 // defense response // inferred from electronic annotation /// 0042742 // defense response to bacterium // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 1371277_at M91450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M91450 /DB_XREF=gi:203399 /FEA=DNA /CNT=1 /TID=Rn.10751.1 /TIER=ConsEnd /STK=0 /UG=Rn.10751 /LL=171042 /UG_GENE=Cdx1 /UG_TITLE=caudal type homeo box 1 /DEF=Rattus norvegicus CDX1 homeoprotein (Cdx1) gene, complete cds M91450 caudal type homeo box 1 Cdx1 364883 XM_001062129 /// XM_344691 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060349 // bone morphogenesis // inferred from electronic annotation /// 0060349 // bone morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1371278_at L38482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L38482 /DB_XREF=gi:1020080 /FEA=DNA /CNT=1 /TID=Rn.2427.1 /TIER=ConsEnd /STK=0 /UG=Rn.2427 /UG_TITLE=Rattus norvegicus serine protease gene, complete cds /DEF=Rattus norvegicus serine protease gene, complete cds L38482 cell division cycle 34 homolog (S. cerevisiae) Cdc34 299602 NM_001013103 0000209 // protein polyubiquitination // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0043951 // negative regulation of cAMP-mediated signaling // not recorded /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070848 // response to growth factor stimulus // inferred from expression pattern /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0090261 // positive regulation of inclusion body assembly // inferred from mutant phenotype 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1371279_at U95113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U95113 /DB_XREF=gi:2072003 /FEA=DNA /CNT=1 /TID=Rn.44354.1 /TIER=ConsEnd /STK=0 /UG=Rn.44354 /UG_TITLE=Rattus norvegicus histone H2a gene, complete cds /DEF=Rattus norvegicus histone H2a gene, complete cds U95113 Histone H2a RGD1564767 498753 NM_001024282 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded 1371280_at AB003753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB003753 /DB_XREF=gi:3046870 /FEA=DNA_2 /CNT=1 /TID=Rn.44357.1 /TIER=ConsEnd /STK=0 /UG=Rn.44357 /UG_TITLE=Rattus norvegicus genes for high sulfur protein B2E and high sulfur protein B2F, complete cds /DEF=Rattus norvegicus genes for high sulfur protein B2E and high sulfur protein B2F, complete cds AB003753 keratin associated protein 1-5 Krtap1-5 497995 NM_001025135 0005882 // intermediate filament // inferred from electronic annotation /// 0045095 // keratin filament // inferred from electronic annotation 1371281_at M37568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M37568 /DB_XREF=gi:204636 /FEA=DNA /CNT=1 /TID=Rn.44375.1 /TIER=ConsEnd /STK=0 /UG=Rn.44375 /UG_TITLE=Rat homeobox protein R4 gene, complete cds /DEF=Rat homeobox protein R4 gene, complete cds M37568 homeo box C8 Hoxc8 24460 NM_001177326 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007625 // grooming behavior // inferred from electronic annotation /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0021516 // dorsal spinal cord development // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation 1371282_at Z46939 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Z46939 /DB_XREF=gi:1359527 /FEA=DNA_4 /CNT=1 /TID=Rn.44496.1 /TIER=ConsEnd /STK=0 /UG=Rn.44496 /UG_TITLE=R.norvegicus PRM1, PRM2, PRM3 and TNP2 genes /DEF=R.norvegicus PRM1, PRM2, PRM3 and TNP2 genes Z46939 protamine 3 Prm3 442921 NM_001002855 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030261 // chromosome condensation // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation 1371283_at M34001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M34001 /DB_XREF=gi:207684 /FEA=DNA /CNT=1 /TID=Rn.21067.1 /TIER=ConsEnd /STK=0 /UG=Rn.21067 /LL=24371 /UG_GENE=Fos /UG_TITLE=FBJ murine osteosarcoma viral (v-fos) oncogene homolog /DEF=Rat wb-Fos protein gene, 5 end M34001 0001661 // conditioned taste aversion // inferred from expression pattern /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006950 // response to stress // inferred from expression pattern /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0009409 // response to cold // inferred from expression pattern /// 0009416 // response to light stimulus // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009629 // response to gravity // inferred from expression pattern /// 0009636 // response to toxin // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030431 // sleep // inferred from expression pattern /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0034614 // cellular response to reactive oxygen species // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred by curator /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0070412 // R-SMAD binding // inferred from electronic annotation 1371284_at AJ391310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ391310 /DB_XREF=gi:6900993 /FEA=DNA /CNT=1 /TID=Rn.44841.1 /TIER=ConsEnd /STK=0 /UG=Rn.44841 /UG_TITLE=Rattus norvegicus partial IGHV gene for immunoglobulin heavy chain, clone MZ31JH23 /DEF=Rattus norvegicus partial IGHV gene for immunoglobulin heavy chain, clone MZ31JH23 AJ391310 immunoglobulin heavy chain, alpha Igha 314487 1371285_at M37567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M37567 /DB_XREF=gi:204634 /FEA=DNA /CNT=1 /TID=Rn.44374.1 /TIER=ConsEnd /STK=0 /UG=Rn.44374 /UG_TITLE=Rat homeobox protein R3 gene, complete cds /DEF=Rat homeobox protein R3 gene, complete cds M37567 homeo box C4 Hoxc4 24459 NM_001109884 0001501 // skeletal system development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048562 // embryonic organ morphogenesis // not recorded /// 0051216 // cartilage development // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1371286_at X76129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X76129 /DB_XREF=gi:458851 /FEA=DNA /CNT=1 /TID=Rn.44229.1 /TIER=ConsEnd /STK=0 /UG=Rn.44229 /LL=57304 /UG_GENE=uPAR-3 /UG_TITLE=urinary plasminogen activator receptor 3 /DEF=Rattus norvegicus uPAR-3 gene, partial CDS X76129 0043403 // skeletal muscle tissue regeneration // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0046658 // anchored to plasma membrane // traceable author statement 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // traceable author statement /// 0019899 // enzyme binding // inferred from electronic annotation /// 0030377 // U-plasminogen activator receptor activity // inferred from mutant phenotype /// 0030377 // U-plasminogen activator receptor activity // traceable author statement 1371287_at M88356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M88356 /DB_XREF=gi:204244 /FEA=DNA /CNT=1 /TID=Rn.10928.2 /TIER=ConsEnd /STK=0 /UG=Rn.10928 /LL=29423 /UG_GENE=Gap43 /UG_TITLE=growth accentuating protein 43 /DEF=Rattus norvegicus GAP-43 protein gene, complete cds M88356 growth associated protein 43 Gap43 29423 NM_017195 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from expression pattern /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0010001 // glial cell differentiation // inferred from electronic annotation /// 0010001 // glial cell differentiation // not recorded /// 0016198 // axon choice point recognition // inferred from electronic annotation /// 0016198 // axon choice point recognition // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0040008 // regulation of growth // inferred from electronic annotation /// 0042246 // tissue regeneration // inferred from expression pattern /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045165 // cell fate commitment // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0030426 // growth cone // traceable author statement /// 0032584 // growth cone membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation 1371288_at J02582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J02582 /DB_XREF=gi:202957 /FEA=DNA_2 /CNT=1 /TID=Rn.64667.1 /TIER=ConsEnd /STK=0 /UG=Rn.64667 /UG_TITLE=Rat apolipoprotein E gene, complete cds /DEF=Rat apolipoprotein E gene, complete cds J02582 0001937 // negative regulation of endothelial cell proliferation // inferred from electronic annotation /// 0002021 // response to dietary excess // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006707 // cholesterol catabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from direct assay /// 0006869 // lipid transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from sequence or structural similarity /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007263 // nitric oxide mediated signal transduction // inferred from electronic annotation /// 0007568 // aging // inferred from direct assay /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010544 // negative regulation of platelet activation // inferred from electronic annotation /// 0010873 // positive regulation of cholesterol esterification // inferred from electronic annotation /// 0010875 // positive regulation of cholesterol efflux // inferred from electronic annotation /// 0014012 // peripheral nervous system axon regeneration // inferred from expression pattern /// 0019934 // cGMP-mediated signaling // inferred from electronic annotation /// 0030195 // negative regulation of blood coagulation // inferred from electronic annotation /// 0030828 // positive regulation of cGMP biosynthetic process // inferred from electronic annotation /// 0031102 // neuron projection regeneration // traceable author statement /// 0032488 // Cdc42 protein signal transduction // inferred from electronic annotation /// 0032805 // positive regulation of low-density lipoprotein receptor catabolic process // inferred from electronic annotation /// 0033344 // cholesterol efflux // inferred from electronic annotation /// 0033700 // phospholipid efflux // inferred from electronic annotation /// 0034372 // very-low-density lipoprotein particle remodeling // inferred from electronic annotation /// 0034374 // low-density lipoprotein particle remodeling // inferred from electronic annotation /// 0034375 // high-density lipoprotein particle remodeling // inferred from electronic annotation /// 0034380 // high-density lipoprotein particle assembly // inferred from electronic annotation /// 0034382 // chylomicron remnant clearance // inferred from electronic annotation /// 0034384 // high-density lipoprotein particle clearance // inferred from electronic annotation /// 0034447 // very-low-density lipoprotein particle clearance // inferred from electronic annotation /// 0042157 // lipoprotein metabolic process // inferred from direct assay /// 0042157 // lipoprotein metabolic process // inferred from electronic annotation /// 0042158 // lipoprotein biosynthetic process // inferred from electronic annotation /// 0042159 // lipoprotein catabolic process // inferred from electronic annotation /// 0042311 // vasodilation // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // inferred from electronic annotation /// 0043537 // negative regulation of blood vessel endothelial cell migration // inferred from electronic annotation /// 0043691 // reverse cholesterol transport // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from direct assay /// 0045541 // negative regulation of cholesterol biosynthetic process // inferred from electronic annotation /// 0048844 // artery morphogenesis // inferred from electronic annotation /// 0051000 // positive regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051044 // positive regulation of membrane protein ectodomain proteolysis // inferred from electronic annotation /// 0051651 // maintenance of location in cell // inferred from electronic annotation /// 0055088 // lipid homeostasis // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005874 // microtubule // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0031232 // extrinsic to external side of plasma membrane // inferred from direct assay /// 0034361 // very-low-density lipoprotein particle // inferred from electronic annotation /// 0034362 // low-density lipoprotein particle // inferred from electronic annotation /// 0034363 // intermediate-density lipoprotein particle // inferred from electronic annotation /// 0034364 // high-density lipoprotein particle // inferred from electronic annotation /// 0042627 // chylomicron // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay 0001540 // beta-amyloid binding // inferred from electronic annotation /// 0001540 // beta-amyloid binding // inferred from sequence or structural similarity /// 0005319 // lipid transporter activity // inferred from direct assay /// 0005319 // lipid transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from direct assay /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0016209 // antioxidant activity // inferred from electronic annotation /// 0017127 // cholesterol transporter activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046911 // metal chelating activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0048156 // tau protein binding // inferred from electronic annotation /// 0050750 // low-density lipoprotein receptor binding // inferred from electronic annotation /// 0060228 // phosphatidylcholine-sterol O-acyltransferase activator activity // inferred from electronic annotation /// 0070326 // very-low-density lipoprotein receptor binding // inferred from electronic annotation 1371289_at U16359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U16359 /DB_XREF=gi:854726 /FEA=DNA /CNT=1 /TID=Rn.10400.2 /TIER=ConsEnd /STK=0 /UG=Rn.10400 /LL=24599 /UG_GENE=Nos2a /UG_TITLE=Nitric oxide synthase 2, inducible /DEF=Rattus norvegicus nitric oxide synthase gene, complete cds U16359 0001935 // endothelial cell proliferation // inferred from expression pattern /// 0001974 // blood vessel remodeling // inferred from mutant phenotype /// 0006809 // nitric oxide biosynthetic process // inferred from direct assay /// 0007165 // signal transduction // inferred from direct assay /// 0007199 // G-protein signaling, coupled to cGMP nucleotide second messenger // inferred from direct assay /// 0007243 // intracellular protein kinase cascade // inferred from mutant phenotype /// 0007568 // aging // inferred from expression pattern /// 0008016 // regulation of heart contraction // inferred from mutant phenotype /// 0008217 // regulation of blood pressure // inferred from mutant phenotype /// 0019934 // cGMP-mediated signaling // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0048384 // retinoic acid receptor signaling pathway // inferred from expression pattern /// 0050829 // defense response to Gram-negative bacterium // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005777 // peroxisome // inferred from direct assay 0004517 // nitric-oxide synthase activity // inferred from direct assay /// 0004517 // nitric-oxide synthase activity // traceable author statement /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from direct assay /// 0010181 // FMN binding // traceable author statement /// 0016597 // amino acid binding // traceable author statement /// 0020037 // heme binding // traceable author statement /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0050660 // FAD or FADH2 binding // traceable author statement /// 0050661 // NADP or NADPH binding // traceable author statement 1371290_a_at U68491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U68491 /DB_XREF=gi:1857140 /FEA=DNA /CNT=1 /TID=Rn.32096.4 /TIER=ConsEnd /STK=0 /UG=Rn.32096 /LL=65032 /UG_GENE=Htr7 /UG_TITLE=high affinity serotonin receptor (5HT7) gene /DEF=Rattus norvegicus 5-hydroxytryptamine7 receptor gene, partial cds U68491 5-hydroxytryptamine (serotonin) receptor 7 Htr7 65032 NM_022938 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007187 // G-protein signaling, coupled to cyclic nucleotide second messenger // traceable author statement /// 0007192 // activation of adenylate cyclase activity by serotonin receptor signaling pathway // inferred from direct assay /// 0007210 // serotonin receptor signaling pathway // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030594 // neurotransmitter receptor activity // inferred from direct assay 1371291_at X69029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X69029 /DB_XREF=gi:5805069 /FEA=DNA /CNT=1 /TID=Rn.44630.1 /TIER=ConsEnd /STK=0 /UG=Rn.44630 /UG_TITLE=Rattus norvegicus CREB gene 3 end /DEF=Rattus norvegicus CREB gene 3 end X69029 cAMP responsive element binding protein 1 Creb1 81646 NM_031017 /// NM_134443 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007595 // lactation // inferred from electronic annotation /// 0007595 // lactation // not recorded /// 0008361 // regulation of cell size // inferred from electronic annotation /// 0008361 // regulation of cell size // not recorded /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010033 // response to organic substance // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0021983 // pituitary gland development // not recorded /// 0030879 // mammary gland development // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0032916 // positive regulation of transforming growth factor-beta3 production // inferred from mutant phenotype /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0042752 // regulation of circadian rhythm // inferred from mutant phenotype /// 0042981 // regulation of apoptosis // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046887 // positive regulation of hormone secretion // inferred from electronic annotation /// 0046887 // positive regulation of hormone secretion // not recorded 0000785 // chromatin // inferred from direct assay /// 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from direct assay /// 0005667 // transcription factor complex // inferred from mutant phenotype /// 0005667 // transcription factor complex // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003704 // specific RNA polymerase II transcription factor activity // inferred from mutant phenotype /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1371292_at BF410343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410343 /DB_XREF=gi:11398318 /DB_XREF=UI-R-CA1-bjw-d-04-0-UI.s1 /CLONE=UI-R-CA1-bjw-d-04-0-UI /FEA=mRNA /CNT=4 /TID=Rn.10414.2 /TIER=ConsEnd /STK=3 /UG=Rn.10414 /LL=25483 /UG_GENE=Msx2 /UG_TITLE=Msh (Drosophila) homeo box homolog BF410343 msh homeobox 2 Msx2 25483 NM_012982 0001503 // ossification // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0001649 // osteoblast differentiation // inferred from sequence or structural similarity /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030509 // BMP signaling pathway // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // not recorded /// 0071392 // cellular response to estradiol stimulus // inferred from electronic annotation /// 0071392 // cellular response to estradiol stimulus // not recorded /// 0071445 // cellular response to protein stimulus // inferred from electronic annotation /// 0071445 // cellular response to protein stimulus // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from sequence or structural similarity /// 0010843 // promoter binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1371293_at AI103218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103218 /DB_XREF=gi:3707784 /DB_XREF=EST212507 /CLONE=REMBY58 /FEA=EST /CNT=173 /TID=Rn.23925.1 /TIER=Stack /STK=164 /UG=Rn.23925 /UG_TITLE=ESTs, Highly similar to MYOSIN LIGHT CHAIN 1, ATRIAL ISOFORM (R.norvegicus) AI103218 similar to Myosin light polypeptide 4 (Myosin light chain 1, atrial isoform) LOC688228 688228 NM_001109495 0016459 // myosin complex // inferred from electronic annotation 0003774 // motor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1371294_at AW535341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535341 /DB_XREF=gi:7177755 /DB_XREF=UI-R-BS0-aoe-a-05-0-UI.s1 /CLONE=UI-R-BS0-aoe-a-05-0-UI /FEA=EST /CNT=150 /TID=Rn.2703.1 /TIER=Stack /STK=145 /UG=Rn.2703 /UG_TITLE=ESTs, Highly similar to 2206405A hemoglobin:SUBUNIT=zeta (R.norvegicus) AW535341 hemoglobin, zeta Hbz 287168 NM_001172845 /// XM_002724665 /// XM_002727757 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015671 // oxygen transport // inferred from electronic annotation /// 0043249 // erythrocyte maturation // inferred from electronic annotation 0005344 // oxygen transporter activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0019825 // oxygen binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation 1371295_at AW914097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW914097 /DB_XREF=gi:8079757 /DB_XREF=EST345388 /CLONE=RGIAA32 /FEA=EST /CNT=165 /TID=Rn.1931.1 /TIER=Stack /STK=119 /UG=Rn.1931 /UG_TITLE=ESTs, Highly similar to 40S RIBOSOMAL PROTEIN S20 (R.norvegicus) AW914097 ribosomal protein S20 Rps20 122772 NM_001007603 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // not recorded /// 0005515 // protein binding // not recorded 1371296_at AI410703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410703 /DB_XREF=gi:4254207 /DB_XREF=EST238996 /CLONE=RHECU48 /FEA=EST /CNT=112 /TID=Rn.3040.1 /TIER=Stack /STK=14 /UG=Rn.3040 /UG_TITLE=ESTs, Moderately similar to DHSD_HUMAN SUCCINATE DEHYDROGENASE (H.sapiens) AI410703 succinate dehydrogenase complex, subunit D, integral membrane protein Sdhd 363061 NM_198788 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006099 // tricarboxylic acid cycle // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005740 // mitochondrial envelope // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005749 // mitochondrial respiratory chain complex II // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000104 // succinate dehydrogenase activity // not recorded /// 0005506 // iron ion binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048039 // ubiquinone binding // inferred from sequence or structural similarity 1371297_at BI281697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281697 /DB_XREF=gi:14931699 /DB_XREF=UI-R-CT0s-cav-d-07-0-UI.s1 /CLONE=UI-R-CT0s-cav-d-07-0-UI /FEA=EST /CNT=102 /TID=Rn.4192.1 /TIER=Stack /STK=75 /UG=Rn.4192 /UG_TITLE=ESTs, Highly similar to RL7A_HUMAN 60S RIBOSOMAL PROTEIN L7A (R.norvegicus) BI281697 ribosomal protein L7a Rpl7a 296596 NM_001114391 0042254 // ribosome biogenesis // inferred from electronic annotation 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 1371298_at BF284168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284168 /DB_XREF=gi:11215238 /DB_XREF=EST448759 /CLONE=RGIEL78 /FEA=EST /CNT=87 /TID=Rn.3968.1 /TIER=Stack /STK=73 /UG=Rn.3968 /UG_TITLE=ESTs, Highly similar to T46486 chromosomal protein CAPC homolog DKFZp434F205.1 (H.sapiens) BF284168 H19, imprinted maternally expressed transcript H19 309122 NR_027324 0001701 // in utero embryonic development // inferred from mutant phenotype /// 0001889 // liver development // inferred from expression pattern /// 0007519 // skeletal muscle tissue development // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009611 // response to wounding // inferred from expression pattern /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0033993 // response to lipid // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0060231 // mesenchymal to epithelial transition // inferred from expression pattern 1371299_at BG665124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665124 /DB_XREF=gi:13887046 /DB_XREF=DRABYG09 /CLONE=DRABYG09 /FEA=EST /CNT=108 /TID=Rn.2171.1 /TIER=Stack /STK=70 /UG=Rn.2171 /UG_TITLE=ESTs, Highly similar to RS3 MOUSE 40S RIBOSOMAL PROTEIN S3 (R.norvegicus) BG665124 ribosomal protein S3 Rps3 140654 NM_001009239 0006412 // translation // inferred by curator /// 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0006919 // activation of caspase activity // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0045738 // negative regulation of DNA repair // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from direct assay /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030425 // dendrite // inferred from direct assay /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0032587 // ruffle membrane // not recorded 0003684 // damaged DNA binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0003735 // structural constituent of ribosome // inferred by curator /// 0003735 // structural constituent of ribosome // not recorded /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003906 // DNA-(apurinic or apyrimidinic site) lyase activity // not recorded /// 0004519 // endonuclease activity // not recorded /// 0005515 // protein binding // not recorded /// 0019901 // protein kinase binding // not recorded /// 0051059 // NF-kappaB binding // not recorded 1371300_at AA892367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892367 /DB_XREF=gi:3019246 /DB_XREF=EST196170 /CLONE=RKIAP58 /FEA=EST /CNT=73 /TID=Rn.2424.1 /TIER=Stack /STK=68 /UG=Rn.2424 /UG_TITLE=ESTs, Highly similar to RL3 RAT 60S RIBOSOMAL PROTEIN L3 (R.norvegicus) AA892367 ribosomal protein L3 Rpl3 300079 NM_198753 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371301_at BG666892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666892 /DB_XREF=gi:13888814 /DB_XREF=DRACPG04 /CLONE=DRACPG04 /FEA=EST /CNT=86 /TID=Rn.3779.1 /TIER=Stack /STK=66 /UG=Rn.3779 /UG_TITLE=ESTs, Highly similar to RL9 RAT 60S RIBOSOMAL PROTEIN L9 (R.norvegicus) BG666892 ribosomal protein L9 Rpl9 29257 NM_001007598 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0019843 // rRNA binding // inferred from electronic annotation 1371302_at AI406651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406651 /DB_XREF=gi:4250155 /DB_XREF=EST234938 /CLONE=ROVDV35 /FEA=EST /CNT=73 /TID=Rn.2242.1 /TIER=Stack /STK=65 /UG=Rn.2242 /UG_TITLE=ESTs, Highly similar to small EDRK-rich factor 2 (M.musculus) AI406651 small EDRK-rich factor 2 Serf2 502663 NM_001098782 1371303_at AI013458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013458 /DB_XREF=gi:4133870 /DB_XREF=EST208133 /CLONE=RSPBL79 /FEA=EST /CNT=64 /TID=Rn.18003.1 /TIER=Stack /STK=63 /UG=Rn.18003 /UG_TITLE=ESTs, Weakly similar to F08F3.4.p (Caenorhabditis elegans) (C.elegans) AI013458 L-threonine dehydrogenase Tdh 290315 NM_001106044 0008152 // metabolic process // inferred from electronic annotation /// 0044237 // cellular metabolic process // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation 1371304_a_at BI285502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285502 /DB_XREF=gi:14939209 /DB_XREF=UI-R-DD0-caa-h-05-0-UI.s1 /CLONE=UI-R-DD0-caa-h-05-0-UI /FEA=EST /CNT=85 /TID=Rn.969.1 /TIER=Stack /STK=58 /UG=Rn.969 /UG_TITLE=ESTs, Highly similar to MLES RAT MYOSIN LIGHT CHAIN ALKALI, SMOOTH-MUSCLE ISOFORM (R.norvegicus) BI285502 myosin, light chain 6, alkali, smooth muscle and non-muscle /// myosin, light chain 6B, alkali, smooth muscle and non-muscle /// myosin, light polypeptide 6, alkali, smooth muscle and non-muscle-like Myl6 /// Myl6b /// Myl6l 362816 /// 685867 /// 685883 NM_001100983 /// NM_001109484 /// NM_001109486 /// XM_001053789 /// XM_001065619 /// XM_001070858 /// XM_343144 0006936 // muscle contraction // traceable author statement /// 0006936 // muscle contraction // not recorded /// 0007519 // skeletal muscle tissue development // traceable author statement /// 0030049 // muscle filament sliding // traceable author statement 0016459 // myosin complex // traceable author statement /// 0016459 // myosin complex // inferred from electronic annotation /// 0016461 // unconventional myosin complex // traceable author statement /// 0016461 // unconventional myosin complex // inferred from electronic annotation /// 0016461 // unconventional myosin complex // not recorded 0003774 // motor activity // traceable author statement /// 0003774 // motor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008307 // structural constituent of muscle // inferred from sequence or structural similarity /// 0008307 // structural constituent of muscle // traceable author statement /// 0008307 // structural constituent of muscle // not recorded /// 0030898 // actin-dependent ATPase activity // inferred from sequence or structural similarity 1371305_at AI409193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409193 /DB_XREF=gi:4252697 /DB_XREF=EST237485 /CLONE=RKIDO14 /FEA=EST /CNT=75 /TID=Rn.3031.1 /TIER=Stack /STK=58 /UG=Rn.3031 /UG_TITLE=ESTs, Highly similar to RL8_HUMAN 60S RIBOSOMAL PROTEIN L (R.norvegicus) AI409193 ribosomal protein L8 Rpl8 26962 NM_001034916 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0019843 // rRNA binding // inferred from electronic annotation 1371306_at AW533257 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533257 /DB_XREF=gi:7175671 /DB_XREF=UI-R-BU0-ana-f-11-0-UI.s1 /CLONE=UI-R-BU0-ana-f-11-0-UI /FEA=EST /CNT=59 /TID=Rn.20355.1 /TIER=Stack /STK=57 /UG=Rn.20355 /UG_TITLE=ESTs, Moderately similar to GBGB_HUMAN GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)G(S)G(O) GAMMA-11 SUBUNIT (R.norvegicus) AW533257 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 Gngt1 680149 NM_001135777 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007602 // phototransduction // not recorded /// 0008104 // protein localization // not recorded /// 0042462 // eye photoreceptor cell development // not recorded 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation 1371307_at AW914090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW914090 /DB_XREF=gi:8079749 /DB_XREF=EST345381 /CLONE=RGIAA24 /FEA=EST /CNT=92 /TID=Rn.973.1 /TIER=Stack /STK=56 /UG=Rn.973 /UG_TITLE=ESTs, Highly similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 (R.norvegicus) AW914090 ribosomal protein, large, P1 Rplp1 140661 NM_001007604 0006414 // translational elongation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371308_at AA799501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799501 /DB_XREF=gi:2862456 /DB_XREF=EST188998 /CLONE=RHEAB79 /FEA=EST /CNT=87 /TID=Rn.29882.2 /TIER=Stack /STK=55 /UG=Rn.29882 /LL=25488 /UG_GENE=Ndufa5 /UG_TITLE=NADH ubiquinone oxidoreductase subunit B13 AA799501 ribosomal protein S4, X-linked Rps4x 29426 NM_001007600 0006412 // translation // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007275 // multicellular organismal development // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0045727 // positive regulation of translation // inferred from electronic annotation /// 0045727 // positive regulation of translation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // not recorded /// 0005840 // ribosome // inferred from sequence or structural similarity /// 0005840 // ribosome // inferred from electronic annotation /// 0005844 // polysome // inferred from electronic annotation /// 0005844 // polysome // not recorded /// 0015935 // small ribosomal subunit // not recorded /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // not recorded /// 0019843 // rRNA binding // inferred from electronic annotation 1371309_at BI276999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276999 /DB_XREF=gi:14922452 /DB_XREF=UI-R-CY0-bxp-a-06-0-UI.s1 /CLONE=UI-R-CY0-bxp-a-06-0-UI /FEA=EST /CNT=55 /TID=Rn.98.3 /TIER=Stack /STK=50 /UG=Rn.98 /LL=24822 /UG_GENE=Tegt /UG_TITLE=Testis enhanced gene transcript BI276999 transmembrane BAX inhibitor motif containing 6 Tmbim6 24822 NM_019381 0006915 // apoptosis // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0030324 // lung development // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1371310_s_at BI285495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285495 /DB_XREF=gi:14939192 /DB_XREF=UI-R-DD0-caa-g-10-0-UI.s1 /CLONE=UI-R-DD0-caa-g-10-0-UI /FEA=EST /CNT=54 /TID=Rn.32111.1 /TIER=Stack /STK=50 /UG=Rn.32111 /UG_TITLE=ESTs BI285495 serine (or cysteine) peptidase inhibitor, clade H, member 1 Serpinh1 29345 NM_017173 0006950 // response to stress // inferred from electronic annotation /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0030199 // collagen fibril organization // not recorded /// 0032964 // collagen biosynthetic process // inferred from electronic annotation /// 0032964 // collagen biosynthetic process // not recorded /// 0051604 // protein maturation // inferred from electronic annotation /// 0051604 // protein maturation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // not recorded 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005518 // collagen binding // traceable author statement /// 0051082 // unfolded protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // not recorded 1371311_at AI009817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009817 /DB_XREF=gi:3223649 /DB_XREF=EST204268 /CLONE=RLUBO82 /FEA=EST /CNT=61 /TID=Rn.1698.1 /TIER=Stack /STK=49 /UG=Rn.1698 /UG_TITLE=ESTs, Moderately similar to C560_HUMAN SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT, MITOCHONDRIAL PRECURSOR (H.sapiens) AI009817 succinate dehydrogenase complex, subunit C, integral membrane protein Sdhc 289217 NM_001005534 0006099 // tricarboxylic acid cycle // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0045282 // plasma membrane succinate dehydrogenase complex // inferred from electronic annotation 0000104 // succinate dehydrogenase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation 1371312_at AA799736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799736 /DB_XREF=gi:2862691 /DB_XREF=EST189233 /CLONE=RHEAE64 /FEA=EST /CNT=53 /TID=Rn.1023.2 /TIER=Stack /STK=49 /UG=Rn.1023 /UG_TITLE=Rat liver stearyl-CoA desaturase mRNA, complete cds AA799736 coiled-coil-helix-coiled-coil-helix domain containing 2 Chchd2 316643 NM_001015019 0005739 // mitochondrion // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation 1371313_at AI172199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172199 /DB_XREF=gi:3712239 /DB_XREF=EST218196 /CLONE=RMUBW18 /FEA=EST /CNT=70 /TID=Rn.6018.1 /TIER=Stack /STK=48 /UG=Rn.6018 /UG_TITLE=ESTs, Highly similar to 60S RIBOSOMAL PROTEIN L23A (R.norvegicus) AI172199 ribosomal protein L23a Rpl23a 360572 NM_001108283 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019843 // rRNA binding // inferred from electronic annotation 1371314_at BM389736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389736 /DB_XREF=gi:18189789 /DB_XREF=UI-R-CN1-cjp-k-04-0-UI.s1 /CLONE=UI-R-CN1-cjp-k-04-0-UI /FEA=EST /CNT=63 /TID=Rn.3169.1 /TIER=Stack /STK=47 /UG=Rn.3169 /UG_TITLE=ESTs BM389736 neural precursor cell expressed, developmentally down-regulated 4 Nedd4 25489 NM_012986 0006464 // protein modification process // inferred from electronic annotation /// 0006622 // protein targeting to lysosome // not recorded /// 0006955 // immune response // inferred from expression pattern /// 0007041 // lysosomal transport // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0010766 // negative regulation of sodium ion transport // not recorded /// 0010768 // negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage // not recorded /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0019089 // transmission of virus // not recorded /// 0030948 // negative regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0030948 // negative regulation of vascular endothelial growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0031175 // neuron projection development // not recorded /// 0031623 // receptor internalization // not recorded /// 0032801 // receptor catabolic process // not recorded /// 0034644 // cellular response to UV // not recorded /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0042921 // glucocorticoid receptor signaling pathway // not recorded /// 0044111 // development involved in symbiotic interaction // not recorded /// 0045732 // positive regulation of protein catabolic process // not recorded /// 0046824 // positive regulation of nucleocytoplasmic transport // not recorded /// 0048814 // regulation of dendrite morphogenesis // inferred from direct assay /// 0050847 // progesterone receptor signaling pathway // not recorded /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay 0000151 // ubiquitin ligase complex // not recorded /// 0000785 // chromatin // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005902 // microvillus // inferred from direct assay /// 0005938 // cell cortex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from direct assay /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019871 // sodium channel inhibitor activity // not recorded /// 0019904 // protein domain specific binding // not recorded /// 0031698 // beta-2 adrenergic receptor binding // not recorded /// 0043130 // ubiquitin binding // not recorded /// 0050815 // phosphoserine binding // not recorded /// 0050816 // phosphothreonine binding // not recorded /// 0070063 // RNA polymerase binding // not recorded /// 0070064 // proline-rich region binding // not recorded 1371315_at AA891242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891242 /DB_XREF=gi:3018121 /DB_XREF=EST195045 /CLONE=RHEAQ93 /FEA=EST /CNT=44 /TID=Rn.3843.1 /TIER=Stack /STK=44 /UG=Rn.3843 /UG_TITLE=ESTs, Weakly similar to MLRV RAT MYOSIN REGULATORY LIGHT CHAIN 2, VENTRICULARCARDIAC MUSCLE ISOFORM (R.norvegicus) AA891242 myosin, light chain 7, regulatory Myl7 289759 NM_001106017 0031672 // A band // not recorded /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043197 // dendritic spine // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371316_at AI177362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177362 /DB_XREF=gi:4134977 /DB_XREF=EST220980 /CLONE=RPLBY13 /FEA=EST /CNT=59 /TID=Rn.5998.1 /TIER=Stack /STK=43 /UG=Rn.5998 /UG_TITLE=ESTs, Highly similar to ubiquitin-like protein ribosomal protein S30 (R.norvegicus) AI177362 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed Fau 29752 NM_001012739 /// NM_001160231 /// NM_001160232 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // not recorded /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // not recorded /// 0005515 // protein binding // not recorded 1371317_at BI296590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296590 /DB_XREF=gi:14961166 /DB_XREF=UI-R-CV2-cgt-a-04-0-UI.s1 /CLONE=UI-R-CV2-cgt-a-04-0-UI /FEA=EST /CNT=49 /TID=Rn.1707.1 /TIER=Stack /STK=43 /UG=Rn.1707 /UG_TITLE=ESTs, Highly similar to Ldb1a (M.musculus) BI296590 LIM domain binding 1 Ldb1 309447 NM_001107601 0001702 // gastrulation with mouth forming second // not recorded /// 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009948 // anterior/posterior axis specification // not recorded /// 0009948 // anterior/posterior axis specification // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0021549 // cerebellum development // not recorded /// 0021549 // cerebellum development // inferred from electronic annotation /// 0021702 // cerebellar Purkinje cell differentiation // not recorded /// 0021702 // cerebellar Purkinje cell differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0045647 // negative regulation of erythrocyte differentiation // not recorded /// 0045647 // negative regulation of erythrocyte differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003712 // transcription cofactor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0030274 // LIM domain binding // not recorded /// 0030274 // LIM domain binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation 1371318_at BG666872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666872 /DB_XREF=gi:13888794 /DB_XREF=DRACOH12 /CLONE=DRACOH12 /FEA=EST /CNT=80 /TID=Rn.29791.1 /TIER=Stack /STK=42 /UG=Rn.29791 /UG_TITLE=ESTs, Highly similar to 40S RIBOSOMAL PROTEIN S16 (R.norvegicus) BG666872 ribosomal protein S16 Rps16 140655 NM_001169146 /// XM_001078234 /// XM_341815 0006364 // rRNA processing // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006414 // translational elongation // not recorded /// 0042274 // ribosomal small subunit biogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // not recorded /// 0015935 // small ribosomal subunit // inferred from sequence or structural similarity /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371319_at BI278308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278308 /DB_XREF=gi:14925026 /DB_XREF=UI-R-CY0-bxr-h-10-0-UI.s1 /CLONE=UI-R-CY0-bxr-h-10-0-UI /FEA=EST /CNT=105 /TID=Rn.3387.1 /TIER=Stack /STK=42 /UG=Rn.3387 /UG_TITLE=ESTs, Highly similar to ITMB MOUSE INTEGRAL MEMBRANE PROTEIN 2B (M.musculus) BI278308 integral membrane protein 2B Itm2b 290364 NM_001006963 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001540 // beta-amyloid binding // inferred from electronic annotation /// 0001540 // beta-amyloid binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded 1371320_at BF282337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282337 /DB_XREF=gi:11213508 /DB_XREF=EST447029 /CLONE=RGIDN37 /FEA=EST /CNT=105 /TID=Rn.3387.1 /TIER=Stack /STK=12 /UG=Rn.3387 /UG_TITLE=ESTs, Highly similar to ITMB MOUSE INTEGRAL MEMBRANE PROTEIN 2B (M.musculus) BF282337 integral membrane protein 2B Itm2b 290364 NM_001006963 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001540 // beta-amyloid binding // inferred from electronic annotation /// 0001540 // beta-amyloid binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded 1371321_at AI230604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230604 /DB_XREF=gi:3814491 /DB_XREF=EST227299 /CLONE=REMCY88 /FEA=EST /CNT=57 /TID=Rn.6009.1 /TIER=Stack /STK=42 /UG=Rn.6009 /UG_TITLE=ESTs, Highly similar to COXG MOUSE CYTOCHROME C OXIDASE POLYPEPTIDE VIB (M.musculus) AI230604 similar to cytochrome c oxidase, subunit VIb polypeptide 1 LOC688869 688869 NM_001145273 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation 1371322_at BI275624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275624 /DB_XREF=gi:14919718 /DB_XREF=UI-R-CW0-bwk-f-12-0-UI.s1 /CLONE=UI-R-CW0-bwk-f-12-0-UI /FEA=EST /CNT=54 /TID=Rn.7145.2 /TIER=Stack /STK=42 /UG=Rn.7145 /LL=117036 /UG_GENE=Lamc1 /UG_TITLE=laminin, gamma 1 BI275624 laminin, gamma 1 Lamc1 117036 NM_053966 0006461 // protein complex assembly // inferred from electronic annotation /// 0006461 // protein complex assembly // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0022617 // extracellular matrix disassembly // inferred from electronic annotation /// 0022617 // extracellular matrix disassembly // not recorded /// 0031175 // neuron projection development // inferred from electronic annotation /// 0031175 // neuron projection development // not recorded /// 0031581 // hemidesmosome assembly // inferred from electronic annotation /// 0031581 // hemidesmosome assembly // not recorded /// 0034446 // substrate adhesion-dependent cell spreading // inferred from electronic annotation /// 0034446 // substrate adhesion-dependent cell spreading // not recorded 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from direct assay /// 0005604 // basement membrane // not recorded /// 0005604 // basement membrane // inferred from electronic annotation /// 0005605 // basal lamina // inferred from electronic annotation /// 0005605 // basal lamina // not recorded /// 0005606 // laminin-1 complex // inferred from direct assay /// 0031012 // extracellular matrix // not recorded /// 0043259 // laminin-10 complex // inferred from electronic annotation /// 0043259 // laminin-10 complex // not recorded 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043208 // glycosphingolipid binding // inferred from electronic annotation /// 0043208 // glycosphingolipid binding // not recorded 1371323_at BG666002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666002 /DB_XREF=gi:13887924 /DB_XREF=DRACMA02 /CLONE=DRACMA02 /FEA=EST /CNT=61 /TID=Rn.793.2 /TIER=Stack /STK=41 /UG=Rn.793 /LL=83615 /UG_GENE=Atp6s1 /UG_TITLE=ATPase, H+ transporting, lysosomal (vacuolar proton pump), subunit 1 BG666002 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4 Ndufa4 681024 NM_001127684 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005747 // mitochondrial respiratory chain complex I // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded 1371324_at BG673668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG673668 /DB_XREF=gi:13895767 /DB_XREF=DRNBWA02 /CLONE=DRNBWA02 /FEA=EST /CNT=52 /TID=Rn.2083.1 /TIER=Stack /STK=41 /UG=Rn.2083 /UG_TITLE=ESTs BG673668 splicing factor 3b, subunit 5 Sf3b5 680891 NM_001126092 0008380 // RNA splicing // not recorded 0005634 // nucleus // not recorded 1371325_at BM389083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389083 /DB_XREF=gi:18189136 /DB_XREF=UI-R-DZ0-cko-n-17-0-UI.s1 /CLONE=UI-R-DZ0-cko-n-17-0-UI /FEA=EST /CNT=49 /TID=Rn.3940.1 /TIER=Stack /STK=41 /UG=Rn.3940 /UG_TITLE=ESTs, Moderately similar to PRTP MOUSE LYSOSOMAL PROTECTIVE PROTEIN PRECURSOR (M.musculus) BM389083 cathepsin A Ctsa 296370 NM_001011959 0006508 // proteolysis // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0004185 // serine-type carboxypeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371326_at BI276957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276957 /DB_XREF=gi:14922368 /DB_XREF=UI-R-CW0-bxo-d-12-0-UI.s1 /CLONE=UI-R-CW0-bxo-d-12-0-UI /FEA=EST /CNT=45 /TID=Rn.22243.1 /TIER=Stack /STK=41 /UG=Rn.22243 /UG_TITLE=ESTs, Moderately similar to CASEIN KINASE II, ALPHA CHAIN (R.norvegicus) BI276957 casein kinase 2, alpha prime polypeptide Csnk2a2 307641 NM_001107409 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0051726 // regulation of cell cycle // not recorded /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation 1371327_a_at BG666668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666668 /DB_XREF=gi:13888590 /DB_XREF=DRABSB05 /CLONE=DRABSB05 /FEA=EST /CNT=20 /TID=Rn.40305.2 /TIER=Stack /STK=12 /UG=Rn.40305 /UG_TITLE=ESTs, Highly similar to ACTB_HUMAN ACTIN, CYTOPLASMIC 1 (R.norvegicus) BG666668 actin, gamma 1 Actg1 287876 NM_001127449 0007409 // axonogenesis // inferred from direct assay /// 0045214 // sarcomere organization // not recorded /// 0051592 // response to calcium ion // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0030016 // myofibril // not recorded /// 0030424 // axon // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0031941 // filamentous actin // not recorded /// 0035267 // NuA4 histone acetyltransferase complex // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0070688 // MLL5-L complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0050998 // nitric-oxide synthase binding // inferred from electronic annotation 1371328_at BM986552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM986552 /DB_XREF=gi:19705941 /DB_XREF=EST594146 /CLONE=RGOAD14 /FEA=EST /CNT=55 /TID=Rn.1043.1 /TIER=Stack /STK=40 /UG=Rn.1043 /UG_TITLE=ESTs BM986552 1371329_at BI283681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283681 /DB_XREF=gi:14935671 /DB_XREF=UI-R-CW0s-ccg-e-03-0-UI.s1 /CLONE=UI-R-CW0s-ccg-e-03-0-UI /FEA=EST /CNT=57 /TID=Rn.3184.1 /TIER=Stack /STK=40 /UG=Rn.3184 /UG_TITLE=ESTs, Weakly similar to CAG7 RAT ALPHA-N-ACETYLGALACTOSAMINIDE ALPHA-2,6-SIALYLTRANSFERASE (R.norvegicus) BI283681 eukaryotic translation initiation factor 5A Eif5a 287444 NM_001033681 0006406 // mRNA export from nucleus // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006452 // translational frameshifting // inferred from electronic annotation /// 0006611 // protein export from nucleus // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // not recorded /// 0006915 // apoptosis // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0007568 // aging // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008612 // peptidyl-lysine modification to hypusine // inferred from electronic annotation /// 0008612 // peptidyl-lysine modification to hypusine // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0045901 // positive regulation of translational elongation // inferred from electronic annotation /// 0045905 // positive regulation of translational termination // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0051149 // positive regulation of muscle cell differentiation // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005642 // annulate lamellae // not recorded /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005643 // nuclear pore // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017070 // U6 snRNA binding // not recorded /// 0043022 // ribosome binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1371330_at BI284252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284252 /DB_XREF=gi:14936764 /DB_XREF=UI-R-CX0s-ccn-h-12-0-UI.s1 /CLONE=UI-R-CX0s-ccn-h-12-0-UI /FEA=EST /CNT=53 /TID=Rn.14687.1 /TIER=Stack /STK=40 /UG=Rn.14687 /UG_TITLE=ESTs, Highly similar to RL11_HUMAN 60S RIBOSOMAL PROTEIN L11 (R.norvegicus) BI284252 ribosomal protein L11 Rpl11 362631 NM_001025739 0006364 // rRNA processing // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0006605 // protein targeting // not recorded /// 0042273 // ribosomal large subunit biogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019843 // rRNA binding // inferred from electronic annotation 1371331_at BG665037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665037 /DB_XREF=gi:13886959 /DB_XREF=DRABXE03 /CLONE=DRABXE03 /FEA=EST /CNT=57 /TID=Rn.805.1 /TIER=Stack /STK=40 /UG=Rn.805 /UG_TITLE=ESTs BG665037 1371332_at AA848821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848821 /DB_XREF=gi:4131676 /DB_XREF=EST191582 /CLONE=RLUAG80 /FEA=EST /CNT=43 /TID=Rn.3987.1 /TIER=Stack /STK=40 /UG=Rn.3987 /UG_TITLE=ESTs AA848821 1371333_at AI180251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180251 /DB_XREF=gi:3730889 /DB_XREF=EST223994 /CLONE=RSPCS46 /FEA=EST /CNT=43 /TID=Rn.13829.1 /TIER=Stack /STK=39 /UG=Rn.13829 /UG_TITLE=ESTs AI180251 1371334_at BG668228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668228 /DB_XREF=gi:19432143 /DB_XREF=DRACNE01 /CLONE=DRACNE01 /FEA=EST /CNT=45 /TID=Rn.8450.1 /TIER=Stack /STK=39 /UG=Rn.8450 /UG_TITLE=ESTs BG668228 integral membrane protein 2C Itm2c 301575 NM_001009674 0010977 // negative regulation of neuron projection development // not recorded /// 0012502 // induction of programmed cell death // not recorded /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from sequence or structural similarity 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from sequence or structural similarity /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0001540 // beta-amyloid binding // inferred from electronic annotation /// 0001540 // beta-amyloid binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded 1371335_at AA944393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944393 /DB_XREF=gi:3104309 /DB_XREF=EST199892 /CLONE=REMAG49 /FEA=EST /CNT=60 /TID=Rn.2462.1 /TIER=Stack /STK=38 /UG=Rn.2462 /UG_TITLE=ESTs, Moderately similar to T08727 probable H+-transporting ATP synthase (H.sapiens) AA944393 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G Atp5l 300677 NM_212516 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0046034 // ATP metabolic process // inferred from direct assay 0000276 // mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) // inferred from direct assay /// 0000276 // mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0005753 // mitochondrial proton-transporting ATP synthase complex // not recorded 0005515 // protein binding // not recorded /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded 1371336_at AA942716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA942716 /DB_XREF=gi:3102632 /DB_XREF=EST198215 /CLONE=RBRAA40 /FEA=EST /CNT=52 /TID=Rn.1650.1 /TIER=Stack /STK=38 /UG=Rn.1650 /UG_TITLE=ESTs, Moderately similar to AF177862 1 HN1 protein (H.sapiens) AA942716 hematological and neurological expressed 1 Hn1 287828 NM_001005876 0005634 // nucleus // inferred from electronic annotation 1371337_at BG378939 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378939 /DB_XREF=gi:13303411 /DB_XREF=UI-R-CV1-bvu-h-03-0-UI.s1 /CLONE=UI-R-CV1-bvu-h-03-0-UI /FEA=EST /CNT=52 /TID=Rn.3907.1 /TIER=Stack /STK=38 /UG=Rn.3907 /UG_TITLE=ESTs, Weakly similar to COXJ RAT CYTOCHROME C OXIDASE POLYPEPTIDE VIIA-LIVERHEART, MITOCHONDRIAL PRECURSOR (R.norvegicus) BG378939 cytochrome c oxidase subunit VIIa polypeptide 2 like Cox7a2l 298762 NM_001106704 0005739 // mitochondrion // not recorded /// 0005746 // mitochondrial respiratory chain // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation 1371338_at AI232272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232272 /DB_XREF=gi:3816152 /DB_XREF=EST228960 /CLONE=RKIBZ56 /FEA=EST /CNT=41 /TID=Rn.1240.1 /TIER=Stack /STK=38 /UG=Rn.1240 /UG_TITLE=ESTs, Weakly similar to T25417 hypothetical protein T28D6.9 - Caenorhabditis elegans (C.elegans) AI232272 presenilin enhancer 2 homolog (C. elegans) Psenen 292788 NM_001008764 0006509 // membrane protein ectodomain proteolysis // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0006915 // apoptosis // not recorded /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0016485 // protein processing // inferred from electronic annotation /// 0016485 // protein processing // not recorded /// 0031293 // membrane protein intracellular domain proteolysis // not recorded /// 0043085 // positive regulation of catalytic activity // inferred from electronic annotation /// 0043085 // positive regulation of catalytic activity // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004175 // endopeptidase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // not recorded 1371339_at AI599017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599017 /DB_XREF=gi:4608065 /DB_XREF=EST250720 /CLONE=REMEA40 /FEA=EST /CNT=40 /TID=Rn.11675.2 /TIER=Stack /STK=38 /UG=Rn.11675 /LL=29271 /UG_GENE=Cfl1 /UG_TITLE=cofilin 1, non-muscle AI599017 1371340_at AW919054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919054 /DB_XREF=gi:8084843 /DB_XREF=EST350358 /CLONE=RGIFC21 /FEA=EST /CNT=61 /TID=Rn.976.1 /TIER=Stack /STK=37 /UG=Rn.976 /UG_TITLE=ESTs, Highly similar to 60S ACIDIC RIBOSOMAL PROTEIN P2 (R.norvegicus) AW919054 ribosomal protein P2-like /// ribosomal protein P2-like /// similar to 60S acidic ribosomal protein P2 /// ribosomal protein, large P2 LOC100362751 /// LOC100363838 /// LOC498555 /// Rplp2 100362751 /// 100363838 /// 140662 /// 498555 NM_001030021 /// XM_001075110 /// XM_002724968 /// XM_002728106 /// XM_002728107 /// XM_573831 0006414 // translational elongation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1371341_at BG372885 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372885 /DB_XREF=gi:13269422 /DB_XREF=UI-R-CV1-bsa-h-06-0-UI.s1 /CLONE=UI-R-CV1-bsa-h-06-0-UI /FEA=EST /CNT=49 /TID=Rn.3250.1 /TIER=Stack /STK=37 /UG=Rn.3250 /UG_TITLE=ESTs, Highly similar to B Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human Snrnp Core Domain (H.sapiens) BG372885 small nuclear ribonucleoprotein D2 polypeptide Snrpd2 680309 NM_001109399 0000387 // spliceosomal snRNP assembly // not recorded /// 0008380 // RNA splicing // not recorded 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371342_at BI277021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277021 /DB_XREF=gi:14922495 /DB_XREF=UI-R-CY0-bxp-c-06-0-UI.s1 /CLONE=UI-R-CY0-bxp-c-06-0-UI /FEA=EST /CNT=55 /TID=Rn.1413.1 /TIER=Stack /STK=37 /UG=Rn.1413 /UG_TITLE=ESTs, Highly similar to CY1_HUMAN CYTOCHROME C1, HEME PROTEIN PRECURSOR (H.sapiens) BI277021 cytochrome c-1 Cyc1 300047 NM_001130491 0033762 // response to glucagon stimulus // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation 1371343_at BM391232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391232 /DB_XREF=gi:18191285 /DB_XREF=UI-R-DY0-ckq-g-06-0-UI.s1 /CLONE=UI-R-DY0-ckq-g-06-0-UI /FEA=EST /CNT=45 /TID=Rn.1111.1 /TIER=Stack /STK=37 /UG=Rn.1111 /UG_TITLE=ESTs, Highly similar to A29440 signal recognition particle receptor (H.sapiens) BM391232 signal recognition particle receptor ('docking protein') Srpr 315548 NM_001034150 0006614 // SRP-dependent cotranslational protein targeting to membrane // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation 0005785 // signal recognition particle receptor complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005047 // signal recognition particle binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1371344_at AI177054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177054 /DB_XREF=gi:3727692 /DB_XREF=EST220661 /CLONE=ROVCA26 /FEA=EST /CNT=57 /TID=Rn.2722.2 /TIER=Stack /STK=36 /UG=Rn.2722 /LL=81757 /UG_GENE=Rala /UG_TITLE=-ral simian leukemia viral oncogene homolog A (ras related) AI177054 ribosomal protein L27a Rpl27a 293418 NM_001106290 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1371345_at AI008699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008699 /DB_XREF=gi:3222531 /DB_XREF=EST203150 /CLONE=REMBB80 /FEA=EST /CNT=38 /TID=Rn.1737.1 /TIER=Stack /STK=36 /UG=Rn.1737 /UG_TITLE=ESTs, Moderately similar to methyl-CpG binding domain-containing protein MBD3 (M.musculus) AI008699 methyl-CpG binding domain protein 3 Mbd3 362834 NM_001108735 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006346 // methylation-dependent chromatin silencing // inferred from electronic annotation /// 0009888 // tissue development // inferred from electronic annotation /// 0016573 // histone acetylation // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016581 // NuRD complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1371346_at AI104528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104528 /DB_XREF=gi:3708870 /DB_XREF=EST213817 /CLONE=RHECE67 /FEA=EST /CNT=48 /TID=Rn.3911.1 /TIER=Stack /STK=35 /UG=Rn.3911 /UG_TITLE=ESTs, Weakly similar to NADH:ubiquinone oxidoreductase B17 subunit (H.sapiens) AI104528 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6 Ndufb6 297990 NM_001106646 0005739 // mitochondrion // not recorded /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0031966 // mitochondrial membrane // not recorded 1371347_at BI279371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279371 /DB_XREF=gi:14927122 /DB_XREF=UI-R-DA0-byn-f-04-0-UI.s1 /CLONE=UI-R-DA0-byn-f-04-0-UI /FEA=EST /CNT=45 /TID=Rn.992.1 /TIER=Stack /STK=35 /UG=Rn.992 /UG_TITLE=ESTs BI279371 transmembrane protein 50B Tmem50b 360698 NM_001025014 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 1371348_at BI285627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285627 /DB_XREF=gi:14939468 /DB_XREF=UI-R-CW0-bvv-h-08-0-UI.s2 /CLONE=UI-R-CW0-bvv-h-08-0-UI /FEA=EST /CNT=39 /TID=Rn.2.1 /TIER=Stack /STK=35 /UG=Rn.2 /UG_TITLE=ESTs, Highly similar to PRCE RAT PROTEASOME EPSILON CHAIN PRECURSOR (R.norvegicus) BI285627 proteasome (prosome, macropain) subunit, beta type 5 Psmb5 29425 NM_001105727 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005839 // proteasome core complex // inferred from electronic annotation /// 0005839 // proteasome core complex // not recorded 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1371349_at AI598402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598402 /DB_XREF=gi:4607450 /DB_XREF=EST250105 /CLONE=REMDQ70 /FEA=EST /CNT=40 /TID=Rn.40577.1 /TIER=Stack /STK=35 /UG=Rn.40577 /UG_TITLE=ESTs, Highly similar to COLLAGEN ALPHA 1(VI) CHAIN PRECURSOR (M.musculus) AI598402 1371350_at AI412159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412159 /DB_XREF=gi:4255663 /DB_XREF=EST240453 /CLONE=RKIEG76 /FEA=EST /CNT=41 /TID=Rn.3511.1 /TIER=Stack /STK=35 /UG=Rn.3511 /UG_TITLE=ESTs AI412159 methionine adenosyltransferase II, alpha Mat2a 171347 NM_134351 0006556 // S-adenosylmethionine biosynthetic process // not recorded /// 0006556 // S-adenosylmethionine biosynthetic process // traceable author statement /// 0006556 // S-adenosylmethionine biosynthetic process // inferred from electronic annotation /// 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from direct assay /// 0009416 // response to light stimulus // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from direct assay /// 0042493 // response to drug // inferred from direct assay /// 0051591 // response to cAMP // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004478 // methionine adenosyltransferase activity // not recorded /// 0004478 // methionine adenosyltransferase activity // traceable author statement /// 0004478 // methionine adenosyltransferase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371351_at AI233192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233192 /DB_XREF=gi:3817072 /DB_XREF=EST229880 /CLONE=RKIDC04 /FEA=EST /CNT=35 /TID=Rn.8305.1 /TIER=Stack /STK=35 /UG=Rn.8305 /UG_TITLE=ESTs AI233192 RNA polymerase 1-3 Rpo1-3 360762 NM_001037787 0006350 // transcription // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1371352_at BM391736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391736 /DB_XREF=gi:18191789 /DB_XREF=UI-R-DZ0-cks-e-06-0-UI.s1 /CLONE=UI-R-DZ0-cks-e-06-0-UI /FEA=EST /CNT=48 /TID=Rn.3517.1 /TIER=Stack /STK=34 /UG=Rn.3517 /UG_TITLE=ESTs, Highly similar to HG17 RAT NONHISTONE CHROMOSOMAL PROTEIN HMG-17 (R.norvegicus) BM391736 high mobility group nucleosomal binding domain 2 Hmgn2 114637 NM_001025624 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005694 // chromosome // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371353_at BG663093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663093 /DB_XREF=gi:13885015 /DB_XREF=DRA08B08 /CLONE=DRA08B08 /FEA=EST /CNT=40 /TID=Rn.3432.1 /TIER=Stack /STK=34 /UG=Rn.3432 /UG_TITLE=ESTs, Moderately similar to JC4978 oxidative stress protein A170 - mouse (M.musculus) BG663093 sequestosome 1 Sqstm1 113894 NM_175843 /// NM_181550 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0016236 // macroautophagy // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0043122 // regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043122 // regulation of I-kappaB kinase/NF-kappaB cascade // inferred from sequence or structural similarity /// 0051291 // protein heterooligomerization // inferred from physical interaction 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005080 // protein kinase C binding // inferred from direct assay /// 0005080 // protein kinase C binding // not recorded /// 0005080 // protein kinase C binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0042169 // SH2 domain binding // not recorded /// 0042169 // SH2 domain binding // inferred from sequence or structural similarity /// 0043130 // ubiquitin binding // not recorded /// 0043130 // ubiquitin binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1371354_at AI710682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI710682 /DB_XREF=gi:5000458 /DB_XREF=UI-R-AC0-yh-b-03-0-UI.s1 /CLONE=UI-R-AC0-yh-b-03-0-UI /FEA=EST /CNT=39 /TID=Rn.15460.1 /TIER=Stack /STK=34 /UG=Rn.15460 /UG_TITLE=ESTs, Weakly similar to CALM_HUMAN CALMODULIN (R.norvegicus) AI710682 troponin C type 1 (slow) Tnnc1 290561 NM_001034105 0002086 // diaphragm contraction // inferred from direct assay /// 0006937 // regulation of muscle contraction // inferred from electronic annotation /// 0006937 // regulation of muscle contraction // not recorded /// 0010038 // response to metal ion // inferred from direct assay /// 0032972 // regulation of muscle filament sliding speed // inferred from electronic annotation /// 0032972 // regulation of muscle filament sliding speed // not recorded /// 0043462 // regulation of ATPase activity // inferred from electronic annotation /// 0043462 // regulation of ATPase activity // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0060048 // cardiac muscle contraction // inferred from mutant phenotype /// 0060048 // cardiac muscle contraction // not recorded /// 0060048 // cardiac muscle contraction // inferred from electronic annotation 0005861 // troponin complex // inferred from electronic annotation /// 0005861 // troponin complex // not recorded /// 0043292 // contractile fiber // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0031013 // troponin I binding // inferred from electronic annotation /// 0031013 // troponin I binding // not recorded /// 0031014 // troponin T binding // inferred from electronic annotation /// 0031014 // troponin T binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded /// 0051015 // actin filament binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1371355_at BI280270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280270 /DB_XREF=gi:14928885 /DB_XREF=UI-R-DE0-cag-a-03-0-UI.s1 /CLONE=UI-R-DE0-cag-a-03-0-UI /FEA=EST /CNT=37 /TID=Rn.1128.1 /TIER=Stack /STK=34 /UG=Rn.1128 /UG_TITLE=ESTs, Moderately similar to NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8 (19kD, PGIV) (Homo sapiens) (H.sapiens) BI280270 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8 Ndufa8 296658 NM_001047862 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005747 // mitochondrial respiratory chain complex I // not recorded 1371356_at BI294836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294836 /DB_XREF=gi:14957678 /DB_XREF=UI-R-DK0-cec-g-03-0-UI.s1 /CLONE=UI-R-DK0-cec-g-03-0-UI /FEA=EST /CNT=35 /TID=Rn.1913.1 /TIER=Stack /STK=34 /UG=Rn.1913 /UG_TITLE=ESTs, Highly similar to T46500 hypothetical protein DKFZp434D098.1 (H.sapiens) BI294836 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371357_at AI233246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233246 /DB_XREF=gi:3817126 /DB_XREF=EST229934 /CLONE=RKIDC67 /FEA=EST /CNT=44 /TID=Rn.1620.1 /TIER=Stack /STK=33 /UG=Rn.1620 /UG_TITLE=ESTs, Weakly similar to RNA polymerase I (127 kDa subunit) (Rattus norvegicus) (R.norvegicus) AI233246 insulin-like growth factor binding protein 7 Igfbp7 289560 NM_001013048 0001558 // regulation of cell growth // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0007566 // embryo implantation // inferred from expression pattern /// 0009408 // response to heat // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0050810 // regulation of steroid biosynthetic process // inferred from mutant phenotype /// 0051414 // response to cortisol stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation 1371358_at BI282960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282960 /DB_XREF=gi:14934242 /DB_XREF=UI-R-CW0s-ccf-d-01-0-UI.s1 /CLONE=UI-R-CW0s-ccf-d-01-0-UI /FEA=EST /CNT=43 /TID=Rn.3380.1 /TIER=Stack /STK=33 /UG=Rn.3380 /UG_TITLE=ESTs, Highly similar to T50638 synaptic glycoprotein SC2 (H.sapiens) BI282960 trans-2,3-enoyl-CoA reductase Tecr 191576 NM_138549 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation 1371359_at BG381670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381670 /DB_XREF=gi:13306142 /DB_XREF=UI-R-CT0-bue-a-07-0-UI.s1 /CLONE=UI-R-CT0-bue-a-07-0-UI /FEA=EST /CNT=39 /TID=Rn.3678.1 /TIER=Stack /STK=33 /UG=Rn.3678 /UG_TITLE=ESTs, Moderately similar to myelodysplasiamyeloid leukemia factor 2 (H.sapiens) BG381670 myeloid leukemia factor 2 Mlf2 312709 NM_001107889 0006952 // defense response // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005925 // focal adhesion // not recorded 0005515 // protein binding // not recorded 1371360_at BM384099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384099 /DB_XREF=gi:18184152 /DB_XREF=UI-R-DZ0-cks-d-17-0-UI.s1 /CLONE=UI-R-DZ0-cks-d-17-0-UI /FEA=EST /CNT=40 /TID=Rn.4024.1 /TIER=Stack /STK=33 /UG=Rn.4024 /UG_TITLE=ESTs BM384099 N-myc downstream regulated gene 1 Ndrg1 299923 NM_001011991 0045576 // mast cell activation // inferred from electronic annotation /// 0045576 // mast cell activation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371361_at BI278826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278826 /DB_XREF=gi:14926052 /DB_XREF=UI-R-CX0-bwx-d-02-0-UI.s1 /CLONE=UI-R-CX0-bwx-d-02-0-UI /FEA=EST /CNT=38 /TID=Rn.4086.1 /TIER=Stack /STK=33 /UG=Rn.4086 /UG_TITLE=ESTs BI278826 1371362_at BI285402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285402 /DB_XREF=gi:14939003 /DB_XREF=UI-R-DB0-byz-f-08-0-UI.s1 /CLONE=UI-R-DB0-byz-f-08-0-UI /FEA=EST /CNT=36 /TID=Rn.1733.1 /TIER=Stack /STK=33 /UG=Rn.1733 /UG_TITLE=ESTs BI285402 DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 Ddx17 315133 NM_001015018 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1371363_at BI277042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277042 /DB_XREF=gi:14922537 /DB_XREF=UI-R-CY0-bxp-g-07-0-UI.s1 /CLONE=UI-R-CY0-bxp-g-07-0-UI /FEA=EST /CNT=36 /TID=Rn.1354.1 /TIER=Stack /STK=33 /UG=Rn.1354 /UG_TITLE=ESTs BI277042 glycerol-3-phosphate dehydrogenase 1 (soluble) Gpd1 60666 NM_022215 0005975 // carbohydrate metabolic process // inferred from direct assay /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006072 // glycerol-3-phosphate metabolic process // inferred from direct assay /// 0006072 // glycerol-3-phosphate metabolic process // not recorded /// 0006072 // glycerol-3-phosphate metabolic process // inferred from electronic annotation /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006094 // gluconeogenesis // not recorded /// 0006116 // NADH oxidation // inferred from direct assay /// 0006734 // NADH metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0046168 // glycerol-3-phosphate catabolic process // inferred from electronic annotation /// 0046486 // glycerolipid metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0009331 // glycerol-3-phosphate dehydrogenase complex // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004367 // glycerol-3-phosphate dehydrogenase [NAD+] activity // inferred from direct assay /// 0004367 // glycerol-3-phosphate dehydrogenase [NAD+] activity // not recorded /// 0004367 // glycerol-3-phosphate dehydrogenase [NAD+] activity // traceable author statement /// 0004367 // glycerol-3-phosphate dehydrogenase [NAD+] activity // inferred from electronic annotation /// 0004368 // glycerol-3-phosphate dehydrogenase activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016614 // oxidoreductase activity, acting on CH-OH group of donors // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from direct assay /// 0051287 // NAD or NADH binding // inferred from electronic annotation 1371364_a_at BI285417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285417 /DB_XREF=gi:14939034 /DB_XREF=UI-R-DB0-byz-h-01-0-UI.s1 /CLONE=UI-R-DB0-byz-h-01-0-UI /FEA=EST /CNT=33 /TID=Rn.9977.2 /TIER=Stack /STK=33 /UG=Rn.9977 /LL=25030 /UG_GENE=Andpro /UG_TITLE=Androgen regulated 20 kDa protein BI285417 androgen regulated 20 kDa protein Andpro 25030 NM_012718 0030521 // androgen receptor signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1371365_at BI279788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279788 /DB_XREF=gi:14927941 /DB_XREF=UI-R-CU0s-cbq-h-05-0-UI.s1 /CLONE=UI-R-CU0s-cbq-h-05-0-UI /FEA=EST /CNT=46 /TID=Rn.3460.1 /TIER=Stack /STK=32 /UG=Rn.3460 /UG_TITLE=ESTs, Weakly similar to UBIQUITIN-CONJUGATING ENZYME E2-17 KD 2 (R.norvegicus) BI279788 ubiquitin-conjugating enzyme E2S Ube2s 292588 NM_001106224 0007049 // cell cycle // inferred from electronic annotation /// 0010458 // exit from mitosis // inferred from sequence or structural similarity /// 0010458 // exit from mitosis // inferred from electronic annotation /// 0010994 // free ubiquitin chain polymerization // inferred from sequence or structural similarity /// 0010994 // free ubiquitin chain polymerization // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0035519 // protein K29-linked ubiquitination // inferred from sequence or structural similarity /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0044314 // protein K27-linked ubiquitination // inferred from sequence or structural similarity /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051488 // activation of anaphase-promoting complex activity // inferred from sequence or structural similarity /// 0051488 // activation of anaphase-promoting complex activity // inferred from electronic annotation /// 0070534 // protein K63-linked ubiquitination // inferred from sequence or structural similarity /// 0070979 // protein K11-linked ubiquitination // inferred from sequence or structural similarity /// 0070979 // protein K11-linked ubiquitination // inferred from electronic annotation /// 0085020 // protein K6-linked ubiquitination // inferred from sequence or structural similarity 0005680 // anaphase-promoting complex // inferred from sequence or structural similarity /// 0005680 // anaphase-promoting complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1371366_at AI408677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408677 /DB_XREF=gi:4252181 /DB_XREF=EST236968 /CLONE=ROVEQ92 /FEA=EST /CNT=40 /TID=Rn.1801.1 /TIER=Stack /STK=32 /UG=Rn.1801 /UG_TITLE=ESTs AI408677 Rho GDP dissociation inhibitor (GDI) alpha Arhgdia 360678 NM_001007005 0007266 // Rho protein signal transduction // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // not recorded /// 0032880 // regulation of protein localization // inferred from electronic annotation /// 0032880 // regulation of protein localization // not recorded /// 0050770 // regulation of axonogenesis // not recorded /// 0050771 // negative regulation of axonogenesis // not recorded /// 0050772 // positive regulation of axonogenesis // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0001772 // immunological synapse // inferred from electronic annotation /// 0001772 // immunological synapse // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005094 // Rho GDP-dissociation inhibitor activity // inferred from electronic annotation /// 0005094 // Rho GDP-dissociation inhibitor activity // not recorded /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1371367_at BE107459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107459 /DB_XREF=gi:8499564 /DB_XREF=UI-R-BS1-ayt-h-08-0-UI.s1 /CLONE=UI-R-BS1-ayt-h-08-0-UI /FEA=EST /CNT=38 /TID=Rn.8463.1 /TIER=Stack /STK=32 /UG=Rn.8463 /UG_TITLE=ESTs BE107459 TAR DNA binding protein Tardbp 298648 NM_001011979 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1371368_at BI279499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279499 /DB_XREF=gi:14927370 /DB_XREF=UI-R-DA0-byo-c-06-0-UI.s1 /CLONE=UI-R-DA0-byo-c-06-0-UI /FEA=EST /CNT=37 /TID=Rn.7109.1 /TIER=Stack /STK=32 /UG=Rn.7109 /UG_TITLE=ESTs, Highly similar to S61A RAT PROTEIN TRANSPORT PROTEIN SEC61 ALPHA SUBUNIT (R.norvegicus) BI279499 Sec61 alpha 1 subunit (S. cerevisiae) Sec61a1 80843 NM_199256 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0034341 // response to interferon-gamma // inferred from expression pattern /// 0055085 // transmembrane transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019718 // rough microsome // inferred from direct assay 0005515 // protein binding // not recorded /// 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from electronic annotation /// 0043022 // ribosome binding // inferred from electronic annotation /// 0043022 // ribosome binding // not recorded 1371369_at BI287851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287851 /DB_XREF=gi:14943871 /DB_XREF=UI-R-CW0s-ccm-a-03-0-UI.s1 /CLONE=UI-R-CW0s-ccm-a-03-0-UI /FEA=EST /CNT=38 /TID=Rn.11889.1 /TIER=Stack /STK=32 /UG=Rn.11889 /UG_TITLE=ESTs, Highly similar to S32604 collagen alpha 2(VI) chain - mouse (M.musculus) BI287851 collagen, type VI, alpha 2 Col6a2 361821 NM_001100741 0009749 // response to glucose stimulus // inferred from expression pattern 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042383 // sarcolemma // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371370_a_at BI284578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284578 /DB_XREF=gi:14937377 /DB_XREF=UI-R-DC0-bzn-g-04-0-UI.s1 /CLONE=UI-R-DC0-bzn-g-04-0-UI /FEA=EST /CNT=9 /TID=Rn.1780.5 /TIER=Stack /STK=9 /UG=Rn.1780 /LL=24854 /UG_GENE=Clu /UG_TITLE=Clusterin BI284578 seminal vesicle secretory protein 6 Svs6 362267 NM_001102403 0006915 // apoptosis // traceable author statement /// 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0006950 // response to stress // inferred from expression pattern /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0008219 // cell death // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0009611 // response to wounding // inferred from expression pattern /// 0031018 // endocrine pancreas development // inferred from mutant phenotype /// 0045597 // positive regulation of cell differentiation // inferred from mutant phenotype /// 0048812 // neuron projection morphogenesis // inferred from mutant phenotype 0016235 // aggresome // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from direct assay 1371371_at AW434041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434041 /DB_XREF=gi:6965348 /DB_XREF=UI-R-BJ0p-afo-e-11-0-UI.s1 /CLONE=UI-R-BJ0p-afo-e-11-0-UI /FEA=EST /CNT=42 /TID=Rn.842.1 /TIER=Stack /STK=31 /UG=Rn.842 /UG_TITLE=ESTs, Moderately similar to JE0383 NADH dehydrogenase (H.sapiens) AW434041 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4 Ndufb4 288088 NM_001037338 0005739 // mitochondrion // inferred from electronic annotation 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from electronic annotation 1371372_at AA944161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944161 /DB_XREF=gi:3104077 /DB_XREF=EST199660 /CLONE=REMAD11 /FEA=EST /CNT=37 /TID=Rn.2344.1 /TIER=Stack /STK=31 /UG=Rn.2344 /UG_TITLE=ESTs AA944161 prostaglandin E synthase 3 (cytosolic) Ptges3 362809 NM_001130989 0001516 // prostaglandin biosynthetic process // inferred from sequence or structural similarity /// 0001516 // prostaglandin biosynthetic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0016853 // isomerase activity // inferred from electronic annotation /// 0050220 // prostaglandin-E synthase activity // inferred from sequence or structural similarity /// 0050220 // prostaglandin-E synthase activity // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from sequence or structural similarity 1371373_at AI010460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010460 /DB_XREF=gi:3224292 /DB_XREF=EST204911 /CLONE=RLUBZ72 /FEA=EST /CNT=34 /TID=Rn.4055.2 /TIER=Stack /STK=31 /UG=Rn.4055 /UG_TITLE=Rattus norvegicus TM6P1 (TM6P1) mRNA, complete cds AI010460 ring finger protein 181 Rnf181 297337 NM_001007647 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371374_at AI172177 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172177 /DB_XREF=gi:3712217 /DB_XREF=EST218172 /CLONE=RMUBV88 /FEA=EST /CNT=34 /TID=Rn.1113.1 /TIER=Stack /STK=31 /UG=Rn.1113 /UG_TITLE=ESTs AI172177 MAF1 homolog (S. cerevisiae) Maf1 315093 NM_001014085 0006350 // transcription // inferred from electronic annotation /// 0016480 // negative regulation of transcription from RNA polymerase III promoter // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0030528 // transcription regulator activity // inferred from electronic annotation 1371375_at BI285599 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285599 /DB_XREF=gi:14939419 /DB_XREF=UI-R-CW0-bvv-b-03-0-UI.s2 /CLONE=UI-R-CW0-bvv-b-03-0-UI /FEA=EST /CNT=34 /TID=Rn.16116.1 /TIER=Stack /STK=31 /UG=Rn.16116 /UG_TITLE=ESTs, Moderately similar to I Chain I, Beta-Galactosidase (Chains I-P) (E.coli) BI285599 destrin Dstn 502674 NM_001033666 0005622 // intracellular // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation 1371376_at AI072448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072448 /DB_XREF=gi:3398642 /DB_XREF=UI-R-C2-nk-e-06-0-UI.s1 /CLONE=UI-R-C2-nk-e-06-0-UI /FEA=EST /CNT=33 /TID=Rn.2931.1 /TIER=Stack /STK=31 /UG=Rn.2931 /UG_TITLE=ESTs, Weakly similar to JH0159 histone H1d - rat (R.norvegicus) AI072448 H1 histone family, member X H1fx 500252 XM_001075299 /// XM_575600 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1371377_at BG668512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668512 /DB_XREF=gi:13890434 /DB_XREF=DRACKA02 /CLONE=DRACKA02 /FEA=EST /CNT=56 /TID=Rn.6055.1 /TIER=Stack /STK=30 /UG=Rn.6055 /UG_TITLE=ESTs, Highly similar to 40S RIBOSOMAL PROTEIN S19 (R.norvegicus) BG668512 ribosomal protein S19 Rps19 29287 NM_001037346 0006364 // rRNA processing // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0015669 // gas transport // not recorded /// 0015669 // gas transport // inferred from sequence or structural similarity /// 0030218 // erythrocyte differentiation // not recorded /// 0030218 // erythrocyte differentiation // inferred from sequence or structural similarity /// 0042274 // ribosomal small subunit biogenesis // not recorded /// 0048856 // anatomical structure development // not recorded /// 0048856 // anatomical structure development // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0022627 // cytosolic small ribosomal subunit // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from direct assay /// 0003735 // structural constituent of ribosome // not recorded /// 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1371378_at BM389078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389078 /DB_XREF=gi:18189131 /DB_XREF=UI-R-DZ0-cko-n-07-0-UI.s1 /CLONE=UI-R-DZ0-cko-n-07-0-UI /FEA=EST /CNT=98 /TID=Rn.4113.1 /TIER=Stack /STK=30 /UG=Rn.4113 /UG_TITLE=ESTs, Highly similar to SUI1 MOUSE PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG (M.musculus) BM389078 eukaryotic translation initiation factor 1 Eif1 287703 NM_001105837 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred from electronic annotation 1371379_at AI011738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011738 /DB_XREF=gi:4133484 /DB_XREF=EST206189 /CLONE=ROVAZ52 /FEA=EST /CNT=50 /TID=Rn.2487.1 /TIER=Stack /STK=30 /UG=Rn.2487 /UG_TITLE=ESTs, Highly similar to P044 RAT 0-44 PROTEIN (R.norvegicus) AI011738 similar to Brain protein 44 RGD1563422 289182 NM_001077643 1371380_at AI411413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411413 /DB_XREF=gi:4254917 /DB_XREF=EST239707 /CLONE=RKIES88 /FEA=EST /CNT=39 /TID=Rn.3655.1 /TIER=Stack /STK=30 /UG=Rn.3655 /UG_TITLE=ESTs AI411413 pyruvate dehydrogenase (lipoamide) alpha 1 Pdha1 29554 NM_001004072 0006086 // acetyl-CoA biosynthetic process from pyruvate // inferred from direct assay /// 0006096 // glycolysis // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0010510 // regulation of acetyl-CoA biosynthetic process from pyruvate // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005967 // mitochondrial pyruvate dehydrogenase complex // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0045254 // pyruvate dehydrogenase complex // inferred from direct assay 0004738 // pyruvate dehydrogenase activity // not recorded /// 0004739 // pyruvate dehydrogenase (acetyl-transferring) activity // inferred from direct assay /// 0004739 // pyruvate dehydrogenase (acetyl-transferring) activity // traceable author statement /// 0004739 // pyruvate dehydrogenase (acetyl-transferring) activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016624 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor // inferred from electronic annotation 1371381_at AI007981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI007981 /DB_XREF=gi:3221813 /DB_XREF=EST202432 /CLONE=REMAI03 /FEA=EST /CNT=39 /TID=Rn.35208.1 /TIER=Stack /STK=30 /UG=Rn.35208 /UG_TITLE=ESTs, Moderately similar to UCRX_HUMAN UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.2 KDA PROTEIN (H.sapiens) AI007981 similar to ubiquinol-cytochrome c reductase complex 7.2kDa protein isoform b LOC685322 685322 NM_001170465 0006122 // mitochondrial electron transport, ubiquinol to cytochrome c // inferred from electronic annotation 0005740 // mitochondrial envelope // inferred from electronic annotation 0008121 // ubiquinol-cytochrome-c reductase activity // inferred from electronic annotation 1371382_at BI283060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283060 /DB_XREF=gi:14934432 /DB_XREF=UI-R-DB0-byr-e-07-0-UI.s1 /CLONE=UI-R-DB0-byr-e-07-0-UI /FEA=EST /CNT=36 /TID=Rn.4213.1 /TIER=Stack /STK=30 /UG=Rn.4213 /UG_TITLE=ESTs, Moderately similar to A37098 gelation factor ABP-280, long form (H.sapiens) BI283060 filamin A, alpha Flna 293860 NM_001134599 0007195 // inhibition of adenylate cyclase activity by dopamine receptor signaling pathway // not recorded /// 0031532 // actin cytoskeleton reorganization // not recorded /// 0034394 // protein localization at cell surface // not recorded /// 0042177 // negative regulation of protein catabolic process // not recorded /// 0042993 // positive regulation of transcription factor import into nucleus // not recorded /// 0043113 // receptor clustering // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0045022 // early endosome to late endosome transport // not recorded /// 0045184 // establishment of protein localization // not recorded /// 0050821 // protein stabilization // not recorded /// 0051220 // cytoplasmic sequestering of protein // not recorded /// 0051764 // actin crosslink formation // not recorded 0005576 // extracellular region // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005802 // trans-Golgi network // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0015629 // actin cytoskeleton // not recorded 0001948 // glycoprotein binding // not recorded /// 0003779 // actin binding // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0005080 // protein kinase C binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0017048 // Rho GTPase binding // not recorded /// 0031267 // small GTPase binding // not recorded /// 0034988 // Fc-gamma receptor I complex binding // not recorded /// 0034989 // GTP-Ral binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0048365 // Rac GTPase binding // not recorded /// 0051015 // actin filament binding // not recorded 1371383_at BI296428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296428 /DB_XREF=gi:14960842 /DB_XREF=UI-R-CV2-cgr-b-01-0-UI.s1 /CLONE=UI-R-CV2-cgr-b-01-0-UI /FEA=EST /CNT=37 /TID=Rn.7237.1 /TIER=Stack /STK=30 /UG=Rn.7237 /UG_TITLE=ESTs, Moderately similar to DR1-associated protein 1; negative cofactor 2 alpha; DR1-associated corepressor (Homo sapiens) (H.sapiens) BI296428 Dr1 associated protein 1 (negative cofactor 2 alpha) Drap1 293674 NM_001077668 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1371384_at BG666659 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666659 /DB_XREF=gi:13888581 /DB_XREF=DRABRH08 /CLONE=DRABRH08 /FEA=EST /CNT=43 /TID=Rn.1858.1 /TIER=Stack /STK=30 /UG=Rn.1858 /UG_TITLE=ESTs, Highly similar to BTF3 MOUSE TRANSCRIPTION FACTOR BTF3 (M.musculus) BG666659 basic transcription factor 3 Btf3 294680 NM_001008309 1371385_at BF407158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407158 /DB_XREF=gi:11395133 /DB_XREF=UI-R-BJ2-bqw-d-02-0-UI.s1 /CLONE=UI-R-BJ2-bqw-d-02-0-UI /FEA=EST /CNT=32 /TID=Rn.3827.1 /TIER=Stack /STK=30 /UG=Rn.3827 /UG_TITLE=ESTs, Moderately similar to JC7279 Down syndrome critical region gene-2 (DSCR2) protein - mouse (M.musculus) BF407158 proteasome (prosome, macropain) assembly chaperone 1 Psmg1 288236 NM_001105891 0043248 // proteasome assembly // not recorded 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // not recorded 0005515 // protein binding // not recorded 1371386_at AI407975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407975 /DB_XREF=gi:4251479 /DB_XREF=EST236265 /CLONE=RPLDJ24 /FEA=EST /CNT=41 /TID=Rn.222.1 /TIER=Stack /STK=30 /UG=Rn.222 /UG_TITLE=ESTs, Highly similar to C910_HUMAN PROTEIN C9ORF10 (H.sapiens) AI407975 family with sequence similarity 120A Fam120a 291019 NM_001191816 /// XM_002725241 /// XM_237998 1371387_at AA866477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866477 /DB_XREF=gi:4230003 /DB_XREF=UI-R-E0-br-h-03-0-UI.s1 /CLONE=UI-R-E0-br-h-03-0-UI /FEA=EST /CNT=42 /TID=Rn.2026.1 /TIER=Stack /STK=29 /UG=Rn.2026 /UG_TITLE=ESTs, Moderately similar to COXM MOUSE CYTOCHROME C OXIDASE POLYPEPTIDE VIIB PRECURSOR (M.musculus) AA866477 cytochrome c oxidase subunit VIIb Cox7b 303393 NM_182819 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005746 // mitochondrial respiratory chain // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation 1371388_at BM389223 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389223 /DB_XREF=gi:18189276 /DB_XREF=UI-R-DZ0-cko-i-06-0-UI.s1 /CLONE=UI-R-DZ0-cko-i-06-0-UI /FEA=EST /CNT=50 /TID=Rn.2273.1 /TIER=Stack /STK=29 /UG=Rn.2273 /UG_TITLE=ESTs, Highly similar to PYRUVATE DEHYDROGENASE E1 COMPONENT, BETA SUBUNIT PRECURSOR (R.norvegicus) BM389223 pyruvate dehydrogenase (lipoamide) beta Pdhb 289950 NM_001007620 0006086 // acetyl-CoA biosynthetic process from pyruvate // inferred from direct assay /// 0006096 // glycolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010510 // regulation of acetyl-CoA biosynthetic process from pyruvate // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0045254 // pyruvate dehydrogenase complex // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004739 // pyruvate dehydrogenase (acetyl-transferring) activity // inferred from direct assay /// 0004739 // pyruvate dehydrogenase (acetyl-transferring) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1371389_at AI170668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170668 /DB_XREF=gi:3710708 /DB_XREF=EST216604 /CLONE=RMUAZ68 /FEA=EST /CNT=37 /TID=Rn.3808.1 /TIER=Stack /STK=29 /UG=Rn.3808 /UG_TITLE=ESTs AI170668 hypothetical LOC306766 LOC306766 306766 NM_001014007 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371390_at AA892044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892044 /DB_XREF=gi:3018923 /DB_XREF=EST195847 /CLONE=RKIAL15 /FEA=EST /CNT=37 /TID=Rn.3823.1 /TIER=Stack /STK=29 /UG=Rn.3823 /UG_TITLE=ESTs, Moderately similar to TBB1 RAT TUBULIN BETA CHAIN (R.norvegicus) AA892044 tubulin, beta 2c Tubb2c 296554 NM_199094 0007017 // microtubule-based process // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation 0005829 // cytosol // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1371391_at BM390196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390196 /DB_XREF=gi:18190249 /DB_XREF=UI-R-CN1-cjq-a-23-0-UI.s1 /CLONE=UI-R-CN1-cjq-a-23-0-UI /FEA=EST /CNT=34 /TID=Rn.40247.1 /TIER=Stack /STK=29 /UG=Rn.40247 /UG_TITLE=ESTs BM390196 1371392_at BI283882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283882 /DB_XREF=gi:14936063 /DB_XREF=UI-R-CX0s-ccx-g-08-0-UI.s1 /CLONE=UI-R-CX0s-ccx-g-08-0-UI /FEA=EST /CNT=44 /TID=Rn.7694.1 /TIER=Stack /STK=29 /UG=Rn.7694 /UG_TITLE=ESTs, Highly similar to G6PI MOUSE GLUCOSE-6-PHOSPHATE ISOMERASE (M.musculus) BI283882 glucose phosphate isomerase Gpi 292804 NM_207592 0001525 // angiogenesis // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // inferred from direct assay /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006096 // glycolysis // inferred from electronic annotation /// 0007611 // learning or memory // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0019242 // methylglyoxal biosynthetic process // inferred from mutant phenotype /// 0043154 // negative regulation of caspase activity // inferred from mutant phenotype /// 0043524 // negative regulation of neuron apoptosis // inferred from mutant phenotype /// 0046185 // aldehyde catabolic process // inferred from mutant phenotype /// 0051156 // glucose 6-phosphate metabolic process // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0019717 // synaptosome // inferred from direct assay 0004347 // glucose-6-phosphate isomerase activity // inferred from direct assay /// 0004347 // glucose-6-phosphate isomerase activity // inferred from electronic annotation /// 0004347 // glucose-6-phosphate isomerase activity // not recorded /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0016866 // intramolecular transferase activity // inferred from mutant phenotype /// 0048029 // monosaccharide binding // inferred from physical interaction 1371393_at AA851222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851222 /DB_XREF=gi:2938762 /DB_XREF=EST193990 /CLONE=RPLAE06 /FEA=EST /CNT=30 /TID=Rn.32355.1 /TIER=Stack /STK=29 /UG=Rn.32355 /UG_TITLE=ESTs AA851222 calsyntenin 1 Clstn1 313717 XM_001075647 /// XM_243040 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0045211 // postsynaptic membrane // not recorded 0005509 // calcium ion binding // inferred from electronic annotation 1371394_x_at BG664827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664827 /DB_XREF=gi:13886749 /DB_XREF=DRABLH09 /CLONE=DRABLH09 /FEA=EST /CNT=36 /TID=Rn.37537.1 /TIER=Stack /STK=28 /UG=Rn.37537 /UG_TITLE=ESTs, Weakly similar to POL3 MOUSE RETROVIRUS-RELATED POL POLYPROTEIN (M.musculus) BG664827 1371395_at AA851329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851329 /DB_XREF=gi:2938869 /DB_XREF=EST194097 /CLONE=RPLAF30 /FEA=EST /CNT=40 /TID=Rn.4175.1 /TIER=Stack /STK=28 /UG=Rn.4175 /UG_TITLE=ESTs, Highly similar to HETEROCHROMATIN PROTEIN 1 HOMOLOG GAMMA (M.musculus) AA851329 chromobox homolog 3 (HP1 gamma homolog, Drosophila) Cbx3 297093 NM_001008313 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0000785 // chromatin // inferred from electronic annotation /// 0000785 // chromatin // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005719 // nuclear euchromatin // not recorded /// 0005720 // nuclear heterochromatin // not recorded /// 0005819 // spindle // not recorded /// 0010369 // chromocenter // not recorded 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016565 // general transcriptional repressor activity // not recorded /// 0019899 // enzyme binding // not recorded /// 0019904 // protein domain specific binding // not recorded 1371396_at AI600035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600035 /DB_XREF=gi:4609083 /DB_XREF=EST251738 /CLONE=REMDO69 /FEA=EST /CNT=34 /TID=Rn.2643.1 /TIER=Stack /STK=28 /UG=Rn.2643 /UG_TITLE=ESTs, Highly similar to CGB0_HUMAN HYPOTHETICAL PROTEIN CGI-110 (PROTEIN HSPC175) (H.sapiens) AI600035 1371397_at AI104068 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104068 /DB_XREF=gi:3704919 /DB_XREF=EST213357 /CLONE=RHEBW86 /FEA=EST /CNT=29 /TID=Rn.23856.1 /TIER=Stack /STK=28 /UG=Rn.23856 /UG_TITLE=ESTs, Weakly similar to R05G6.4.p (Caenorhabditis elegans) (C.elegans) AI104068 nitric oxide synthase interacting protein Nosip 292894 NM_001106260 0043086 // negative regulation of catalytic activity // not recorded /// 0051001 // negative regulation of nitric-oxide synthase activity // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded 1371398_at BF281400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281400 /DB_XREF=gi:11212470 /DB_XREF=EST445991 /CLONE=RGIAE29 /FEA=EST /CNT=44 /TID=Rn.3543.1 /TIER=Stack /STK=27 /UG=Rn.3543 /UG_TITLE=ESTs, Highly similar to ATPK MOUSE ATP SYNTHASE F CHAIN, MITOCHONDRIAL (M.musculus) BF281400 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2 Atp5j2 690441 XM_001074466 /// XM_002724790 0046034 // ATP metabolic process // inferred from direct assay 0000276 // mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0005753 // mitochondrial proton-transporting ATP synthase complex // not recorded 0016887 // ATPase activity // not recorded 1371399_at AA818196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818196 /DB_XREF=gi:4198709 /DB_XREF=UI-R-A0-ai-g-08-0-UI.s1 /CLONE=UI-R-A0-ai-g-08-0-UI /FEA=EST /CNT=40 /TID=Rn.1327.1 /TIER=Stack /STK=27 /UG=Rn.1327 /UG_TITLE=ESTs AA818196 translocase of outer mitochondrial membrane 6 homolog (yeast) Tomm6 681123 XM_001060392 /// XM_002727162 0005739 // mitochondrion // not recorded 1371400_at AI169092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169092 /DB_XREF=gi:3705400 /DB_XREF=EST214923 /CLONE=RKIBM96 /FEA=EST /CNT=39 /TID=Rn.81140.2 /TIER=Stack /STK=27 /UG=Rn.81140 /LL=24927 /UG_GENE=Lpgp /UG_TITLE=Lipogenic protein S14 AI169092 thyroid hormone responsive Thrsp 25357 NM_012703 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371401_at BI278836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278836 /DB_XREF=gi:14926070 /DB_XREF=UI-R-CX0-bwx-e-01-0-UI.s1 /CLONE=UI-R-CX0-bwx-e-01-0-UI /FEA=EST /CNT=34 /TID=Rn.3652.1 /TIER=Stack /STK=27 /UG=Rn.3652 /UG_TITLE=ESTs, Highly similar to T09063 hypothetical protein - mouse (M.musculus) BI278836 ring finger protein 5 Rnf5 407784 NM_001109025 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371402_at BM390600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390600 /DB_XREF=gi:18190653 /DB_XREF=UI-R-CN1-cjr-o-11-0-UI.s1 /CLONE=UI-R-CN1-cjr-o-11-0-UI /FEA=EST /CNT=36 /TID=Rn.8109.1 /TIER=Stack /STK=27 /UG=Rn.8109 /UG_TITLE=ESTs BM390600 ATPase, H transporting, lysosomal V1 subunit B2 Atp6v1b2 117596 NM_057213 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007035 // vacuolar acidification // traceable author statement /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0030641 // regulation of cellular pH // traceable author statement /// 0046034 // ATP metabolic process // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016469 // proton-transporting two-sector ATPase complex // inferred from electronic annotation /// 0033178 // proton-transporting two-sector ATPase complex, catalytic domain // inferred from electronic annotation /// 0033180 // proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0046933 // hydrogen ion transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 1371403_at AA799545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799545 /DB_XREF=gi:2862500 /DB_XREF=EST189042 /CLONE=RHEAC38 /FEA=EST /CNT=36 /TID=Rn.6017.1 /TIER=Stack /STK=27 /UG=Rn.6017 /UG_TITLE=ESTs, Weakly similar to TCPA RAT T-COMPLEX PROTEIN 1, ALPHA SUBUNIT (R.norvegicus) AA799545 chaperonin containing Tcp1, subunit 3 (gamma) Cct3 295230 NM_199091 0006457 // protein folding // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005832 // chaperonin-containing T-complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1371404_at AI172206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172206 /DB_XREF=gi:4134721 /DB_XREF=EST218203 /CLONE=RMUBW26 /FEA=EST /CNT=34 /TID=Rn.4002.1 /TIER=Stack /STK=27 /UG=Rn.4002 /UG_TITLE=ESTs AI172206 eukaryotic translation initiation factor 4B Eif4b 300253 NM_001008324 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation 1371405_at BE109143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109143 /DB_XREF=gi:8501248 /DB_XREF=UI-R-BS1-azb-d-10-0-UI.s1 /CLONE=UI-R-BS1-azb-d-10-0-UI /FEA=EST /CNT=33 /TID=Rn.3412.1 /TIER=Stack /STK=27 /UG=Rn.3412 /UG_TITLE=ESTs BE109143 similar to hypothetical protein MGC52110 RGD1565095 503252 NM_001195488 /// XM_001057297 /// XM_578786 0005739 // mitochondrion // not recorded 1371406_at BG664147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664147 /DB_XREF=gi:13886069 /DB_XREF=DRAAEH06 /CLONE=DRAAEH06 /FEA=EST /CNT=30 /TID=Rn.2983.1 /TIER=Stack /STK=27 /UG=Rn.2983 /UG_TITLE=ESTs BG664147 1371407_at AI178285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178285 /DB_XREF=gi:3728923 /DB_XREF=EST221953 /CLONE=RPLCO53 /FEA=EST /CNT=30 /TID=Rn.2611.1 /TIER=Stack /STK=27 /UG=Rn.2611 /UG_TITLE=ESTs, Moderately similar to A53542 brefeldin A-sensitive Golgi protein LDLC (H.sapiens) AI178285 NCK-associated protein 1 Nckap1 58823 NM_031618 0001701 // in utero embryonic development // not recorded /// 0001756 // somitogenesis // not recorded /// 0001843 // neural tube closure // not recorded /// 0007354 // zygotic determination of anterior/posterior axis, embryo // not recorded /// 0007492 // endoderm development // not recorded /// 0008078 // mesodermal cell migration // not recorded /// 0010172 // embryonic body morphogenesis // not recorded /// 0030032 // lamellipodium assembly // not recorded /// 0030903 // notochord development // not recorded /// 0030950 // establishment or maintenance of actin cytoskeleton polarity // not recorded /// 0032880 // regulation of protein localization // not recorded /// 0035050 // embryonic heart tube development // not recorded /// 0042074 // cell migration involved in gastrulation // not recorded /// 0045175 // basal protein localization // not recorded /// 0045176 // apical protein localization // not recorded /// 0048339 // paraxial mesoderm development // not recorded /// 0048340 // paraxial mesoderm morphogenesis // not recorded /// 0048570 // notochord morphogenesis // not recorded /// 0048617 // embryonic foregut morphogenesis // not recorded /// 0050821 // protein stabilization // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0031258 // lamellipodium membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded 1371408_at AI576446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576446 /DB_XREF=gi:4560822 /DB_XREF=UI-R-Y0-vm-h-11-0-UI.s1 /CLONE=UI-R-Y0-vm-h-11-0-UI /FEA=EST /CNT=29 /TID=Rn.20326.1 /TIER=Stack /STK=27 /UG=Rn.20326 /UG_TITLE=ESTs, Highly similar to CRBA RAT BETA CRYSTALLIN A1 (R.norvegicus) AI576446 crystallin, beta A1 Cryba1 25583 XM_001080813 /// XM_340846 0002088 // lens development in camera-type eye // inferred from expression pattern /// 0007601 // visual perception // not recorded /// 0043010 // camera-type eye development // not recorded /// 0043010 // camera-type eye development // inferred from electronic annotation 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0005212 // structural constituent of eye lens // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1371409_at AI231196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231196 /DB_XREF=gi:3815076 /DB_XREF=EST227884 /CLONE=REMDH04 /FEA=EST /CNT=36 /TID=Rn.3311.1 /TIER=Stack /STK=27 /UG=Rn.3311 /UG_TITLE=ESTs AI231196 similar to cDNA sequence BC031181 RGD1562987 498886 NM_001173472 /// XM_001054334 /// XM_574174 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded 1371410_at AI599071 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599071 /DB_XREF=gi:4608119 /DB_XREF=EST250774 /CLONE=REMEB14 /FEA=EST /CNT=32 /TID=Rn.22278.1 /TIER=Stack /STK=27 /UG=Rn.22278 /UG_TITLE=ESTs, Highly similar to CGE0_HUMAN PROTEIN CGI-140 (PROTEIN PTD008) (H.sapiens) AI599071 similar to cDNA sequence BC056474 RGD1564058 288925 NM_001105947 1371411_at BG380275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380275 /DB_XREF=gi:13304747 /DB_XREF=UI-R-CS0-btv-b-08-0-UI.s1 /CLONE=UI-R-CS0-btv-b-08-0-UI /FEA=EST /CNT=30 /TID=Rn.22051.1 /TIER=Stack /STK=27 /UG=Rn.22051 /UG_TITLE=ESTs, Weakly similar to JC4975 plexin 2 precursor - mouse (M.musculus) BG380275 plexin B2 Plxnb2 315217 NM_001108106 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0050772 // positive regulation of axonogenesis // not recorded /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371412_a_at BE107450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107450 /DB_XREF=gi:8499555 /DB_XREF=UI-R-BS1-ayt-g-11-0-UI.s1 /CLONE=UI-R-BS1-ayt-g-11-0-UI /FEA=EST /CNT=28 /TID=Rn.8180.1 /TIER=Stack /STK=27 /UG=Rn.8180 /UG_TITLE=ESTs, Moderately similar to NEURONAL PROTEIN 3.1 (M.musculus) BE107450 1371413_x_at BG371900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371900 /DB_XREF=gi:13268437 /DB_XREF=UI-R-CV0-brj-f-12-0-UI.s1 /CLONE=UI-R-CV0-brj-f-12-0-UI /FEA=EST /CNT=27 /TID=Rn.81097.1 /TIER=Stack /STK=27 /UG=Rn.81097 /UG_TITLE=ESTs, Highly similar to GAMMA CRYSTALLIN B (R.norvegicus) BG371900 crystallin, gamma B Crygb 301468 NM_001109875 0001654 // eye development // inferred from electronic annotation /// 0001654 // eye development // not recorded /// 0002088 // lens development in camera-type eye // inferred from expression pattern /// 0002088 // lens development in camera-type eye // not recorded /// 0002088 // lens development in camera-type eye // inferred from electronic annotation /// 0006457 // protein folding // inferred from direct assay /// 0009408 // response to heat // inferred from electronic annotation /// 0010288 // response to lead ion // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from direct assay /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0070307 // lens fiber cell development // not recorded /// 0070307 // lens fiber cell development // inferred from electronic annotation /// 0070309 // lens fiber cell morphogenesis // inferred from electronic annotation /// 0070309 // lens fiber cell morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay 0005212 // structural constituent of eye lens // inferred from electronic annotation /// 0005212 // structural constituent of eye lens // not recorded /// 0005212 // structural constituent of eye lens // traceable author statement /// 0042802 // identical protein binding // inferred from direct assay 1371414_at BI285576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285576 /DB_XREF=gi:14939374 /DB_XREF=UI-R-CW0s-ccb-g-06-0-UI.s1 /CLONE=UI-R-CW0s-ccb-g-06-0-UI /FEA=EST /CNT=27 /TID=Rn.2883.1 /TIER=Stack /STK=27 /UG=Rn.2883 /UG_TITLE=ESTs, Highly similar to GELS MOUSE GELSOLIN (M.musculus) BI285576 gelsolin Gsn 296654 NM_001004080 0006915 // apoptosis // inferred from direct assay /// 0007568 // aging // inferred from expression pattern /// 0008154 // actin polymerization or depolymerization // inferred from direct assay /// 0014003 // oligodendrocyte development // inferred from expression pattern /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // not recorded /// 0030041 // actin filament polymerization // not recorded /// 0030041 // actin filament polymerization // inferred from sequence or structural similarity /// 0030041 // actin filament polymerization // inferred from electronic annotation /// 0030155 // regulation of cell adhesion // inferred from mutant phenotype /// 0042060 // wound healing // inferred from expression pattern /// 0042246 // tissue regeneration // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0046686 // response to cadmium ion // inferred from direct assay /// 0048015 // phosphoinositide-mediated signaling // inferred from mutant phenotype /// 0051014 // actin filament severing // inferred from mutant phenotype /// 0051014 // actin filament severing // not recorded /// 0051014 // actin filament severing // inferred from sequence or structural similarity /// 0051014 // actin filament severing // inferred from electronic annotation /// 0051593 // response to folic acid // inferred from expression pattern /// 0051693 // actin filament capping // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1371415_at BI279016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279016 /DB_XREF=gi:14926426 /DB_XREF=UI-R-CZ0-byi-b-03-0-UI.s1 /CLONE=UI-R-CZ0-byi-b-03-0-UI /FEA=EST /CNT=38 /TID=Rn.7401.1 /TIER=Stack /STK=26 /UG=Rn.7401 /UG_TITLE=ESTs, Moderately similar to UCRH_HUMAN UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 11 KDA PROTEIN PRECURSOR (H.sapiens) BI279016 ubiquinol-cytochrome c reductase hinge protein Uqcrh 366448 NM_001009480 0006122 // mitochondrial electron transport, ubiquinol to cytochrome c // inferred by curator /// 0006122 // mitochondrial electron transport, ubiquinol to cytochrome c // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from direct assay 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005750 // mitochondrial respiratory chain complex III // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0008121 // ubiquinol-cytochrome-c reductase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay 1371416_at AI231746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231746 /DB_XREF=gi:3815626 /DB_XREF=EST228434 /CLONE=RHECG30 /FEA=EST /CNT=32 /TID=Rn.3159.1 /TIER=Stack /STK=26 /UG=Rn.3159 /UG_TITLE=ESTs, Highly similar to JE0092 NADH dehydrogenase (H.sapiens) AI231746 NADH dehydrogenase (ubiquinone) flavoprotein 1 Ndufv1 293655 NM_001006972 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005747 // mitochondrial respiratory chain complex I // not recorded 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from electronic annotation /// 0010181 // FMN binding // inferred from electronic annotation /// 0016651 // oxidoreductase activity, acting on NADH or NADPH // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 1371417_at AI233054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233054 /DB_XREF=gi:3816934 /DB_XREF=EST229742 /CLONE=RKICK27 /FEA=EST /CNT=32 /TID=Rn.3472.1 /TIER=Stack /STK=26 /UG=Rn.3472 /UG_TITLE=ESTs, Weakly similar to UCRQ_HUMAN UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C (H.sapiens) AI233054 ubiquinol-cytochrome c reductase, complex III subunit VII Uqcrq 497902 NM_001025134 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0008121 // ubiquinol-cytochrome-c reductase activity // inferred from electronic annotation 1371418_at BG665035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665035 /DB_XREF=gi:13886957 /DB_XREF=DRABXE01 /CLONE=DRABXE01 /FEA=EST /CNT=35 /TID=Rn.2392.1 /TIER=Stack /STK=26 /UG=Rn.2392 /UG_TITLE=ESTs, Weakly similar to TCPA RAT T-COMPLEX PROTEIN 1, ALPHA SUBUNIT (R.norvegicus) BG665035 chaperonin containing TCP1, subunit 2 (beta) Cct2 299809 NM_001005905 0006457 // protein folding // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005832 // chaperonin-containing T-complex // inferred from electronic annotation /// 0005832 // chaperonin-containing T-complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1371419_at AW918614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918614 /DB_XREF=gi:8084394 /DB_XREF=EST349918 /CLONE=RGIEV42 /FEA=EST /CNT=31 /TID=Rn.7493.1 /TIER=Stack /STK=26 /UG=Rn.7493 /UG_TITLE=ESTs AW918614 spectrin, beta, non-erythrocytic 1 Sptbn1 305614 NM_001013130 0007182 // common-partner SMAD protein phosphorylation // not recorded /// 0007182 // common-partner SMAD protein phosphorylation // inferred from electronic annotation /// 0007184 // SMAD protein nuclear translocation // not recorded /// 0007184 // SMAD protein nuclear translocation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008091 // spectrin // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // not recorded /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0032437 // cuticular plate // not recorded /// 0032437 // cuticular plate // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1371420_at AI412054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412054 /DB_XREF=gi:4255558 /DB_XREF=EST240348 /CLONE=RKIEH71 /FEA=EST /CNT=30 /TID=Rn.7342.1 /TIER=Stack /STK=26 /UG=Rn.7342 /UG_TITLE=ESTs AI412054 92Aa-Protein LOC494529 494529 NM_001009974 1371421_at BM391873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391873 /DB_XREF=gi:18191926 /DB_XREF=UI-R-DO1-cmk-l-18-0-UI.s1 /CLONE=UI-R-DO1-cmk-l-18-0-UI /FEA=EST /CNT=36 /TID=Rn.3784.1 /TIER=Stack /STK=26 /UG=Rn.3784 /UG_TITLE=ESTs, Highly similar to SCOT_HUMAN SUCCINYL-COA:3-KETOACID-COENZYME A TRANSFERASE PRECURSOR (H.sapiens) BM391873 3-oxoacid CoA transferase 1 Oxct1 690163 NM_001127580 0007420 // brain development // inferred from expression pattern /// 0007507 // heart development // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0014823 // response to activity // inferred from expression pattern /// 0032024 // positive regulation of insulin secretion // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0042594 // response to starvation // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0046950 // cellular ketone body metabolic process // inferred from expression pattern /// 0046950 // cellular ketone body metabolic process // not recorded /// 0046950 // cellular ketone body metabolic process // inferred from electronic annotation /// 0046952 // ketone body catabolic process // inferred from electronic annotation /// 0060612 // adipose tissue development // inferred from expression pattern /// 0071229 // cellular response to acid // inferred from mutant phenotype /// 0071333 // cellular response to glucose stimulus // inferred from mutant phenotype 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded 0008260 // 3-oxoacid CoA-transferase activity // inferred from direct assay /// 0008260 // 3-oxoacid CoA-transferase activity // not recorded /// 0008260 // 3-oxoacid CoA-transferase activity // inferred from electronic annotation /// 0008410 // CoA-transferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay 1371422_at BM392210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392210 /DB_XREF=gi:18192263 /DB_XREF=UI-R-DO1-ckp-b-03-0-UI.s1 /CLONE=UI-R-DO1-ckp-b-03-0-UI /FEA=EST /CNT=33 /TID=Rn.6961.1 /TIER=Stack /STK=26 /UG=Rn.6961 /UG_TITLE=ESTs, Highly similar to MRGX_HUMAN TRANSCRIPTION FACTOR-LIKE PROTEIN MRGX (H.sapiens) BM392210 mortality factor 4 like 2 Morf4l2 317413 NM_001007714 0006281 // DNA repair // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0040008 // regulation of growth // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0051155 // positive regulation of striated muscle cell differentiation // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0005515 // protein binding // not recorded 1371423_at AA800010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800010 /DB_XREF=gi:2862965 /DB_XREF=EST189507 /CLONE=RHEAI29 /FEA=EST /CNT=32 /TID=Rn.4245.1 /TIER=Stack /STK=26 /UG=Rn.4245 /UG_TITLE=ESTs, Weakly similar to T25460 hypothetical protein B0432.3 - Caenorhabditis elegans (C.elegans) AA800010 mitochondrial ribosomal protein L41 Mrpl41 296551 NM_001013426 0006412 // translation // not recorded /// 0006412 // translation // inferred from sequence or structural similarity /// 0006915 // apoptosis // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005762 // mitochondrial large ribosomal subunit // not recorded /// 0005762 // mitochondrial large ribosomal subunit // inferred from sequence or structural similarity /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // not recorded /// 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity 1371424_at BG378621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378621 /DB_XREF=gi:13303093 /DB_XREF=UI-R-CV1-bvr-f-05-0-UI.s1 /CLONE=UI-R-CV1-bvr-f-05-0-UI /FEA=EST /CNT=28 /TID=Rn.22093.1 /TIER=Stack /STK=26 /UG=Rn.22093 /UG_TITLE=ESTs BG378621 jumonji domain containing 5 Jmjd5 308976 NM_001037196 0000086 // G2/M transition of mitotic cell cycle // inferred from sequence or structural similarity /// 0006350 // transcription // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0070544 // histone H3-K36 demethylation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051864 // histone demethylase activity (H3-K36 specific) // inferred from sequence or structural similarity 1371425_at BF396399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396399 /DB_XREF=gi:11381371 /DB_XREF=UI-R-BS2-bdx-f-08-0-UI.s1 /CLONE=UI-R-BS2-bdx-f-08-0-UI /FEA=EST /CNT=29 /TID=Rn.1125.1 /TIER=Stack /STK=26 /UG=Rn.1125 /UG_TITLE=ESTs BF396399 serine/arginine repetitive matrix 1 Srrm1 313620 NM_001107986 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005681 // spliceosomal complex // not recorded 0005515 // protein binding // not recorded 1371426_at BI298508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298508 /DB_XREF=gi:14974788 /DB_XREF=UI-R-CV2-chk-c-06-0-UI.s1 /CLONE=UI-R-CV2-chk-c-06-0-UI /FEA=EST /CNT=26 /TID=Rn.66170.1 /TIER=Stack /STK=26 /UG=Rn.66170 /UG_TITLE=ESTs BI298508 1371427_at BG380709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380709 /DB_XREF=gi:13305181 /DB_XREF=UI-R-CT0-bua-e-06-0-UI.s1 /CLONE=UI-R-CT0-bua-e-06-0-UI /FEA=EST /CNT=45 /TID=Rn.3781.1 /TIER=Stack /STK=25 /UG=Rn.3781 /UG_TITLE=ESTs, Highly similar to 2208369A signal peptidase:SUBUNIT=12kD (H.sapiens) BG380709 signal peptidase complex subunit 1 homolog (S. cerevisiae) Spcs1 290555 NM_001131006 0006465 // signal peptide processing // inferred from electronic annotation 0005787 // signal peptidase complex // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008233 // peptidase activity // inferred from electronic annotation 1371428_at AI170002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170002 /DB_XREF=gi:3710042 /DB_XREF=EST215918 /CLONE=RLIAY40 /FEA=EST /CNT=34 /TID=Rn.1965.2 /TIER=Stack /STK=25 /UG=Rn.1965 /LL=64053 /UG_GENE=Dlg2 /UG_TITLE=discs, large (Drosophila) homolog 2 (chapsyn-110) AI170002 SEC61, gamma subunit Sec61g 689134 NM_001135020 0006605 // protein targeting // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from electronic annotation 1371429_at BF281192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281192 /DB_XREF=gi:11212346 /DB_XREF=EST445867 /CLONE=RGIAC57 /FEA=EST /CNT=49 /TID=Rn.2065.1 /TIER=Stack /STK=25 /UG=Rn.2065 /UG_TITLE=ESTs BF281192 1371430_at AW251326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251326 /DB_XREF=gi:6594917 /DB_XREF=UI-R-BJ0-adg-h-03-0-UI.s1 /CLONE=UI-R-BJ0-adg-h-03-0-UI /FEA=EST /CNT=49 /TID=Rn.2065.1 /TIER=Stack /STK=8 /UG=Rn.2065 /UG_TITLE=ESTs AW251326 1371431_at BI296577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296577 /DB_XREF=gi:14961129 /DB_XREF=UI-R-CV2-cgs-g-07-0-UI.s1 /CLONE=UI-R-CV2-cgs-g-07-0-UI /FEA=EST /CNT=30 /TID=Rn.14316.1 /TIER=Stack /STK=25 /UG=Rn.14316 /UG_TITLE=ESTs BI296577 peroxisomal biogenesis factor 5 Pex5 312703 NM_001170584 /// XM_001062081 /// XM_232343 0000038 // very long-chain fatty acid metabolic process // inferred from electronic annotation /// 0000038 // very long-chain fatty acid metabolic process // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0006625 // protein targeting to peroxisome // inferred from electronic annotation /// 0006625 // protein targeting to peroxisome // not recorded /// 0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007006 // mitochondrial membrane organization // inferred from electronic annotation /// 0007006 // mitochondrial membrane organization // not recorded /// 0007029 // endoplasmic reticulum organization // inferred from electronic annotation /// 0007029 // endoplasmic reticulum organization // not recorded /// 0007031 // peroxisome organization // not recorded /// 0007031 // peroxisome organization // inferred from electronic annotation /// 0008299 // isoprenoid biosynthetic process // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016561 // protein import into peroxisome matrix, translocation // inferred from electronic annotation /// 0016561 // protein import into peroxisome matrix, translocation // not recorded /// 0021795 // cerebral cortex cell migration // inferred from electronic annotation /// 0021795 // cerebral cortex cell migration // not recorded /// 0021895 // cerebral cortex neuron differentiation // inferred from electronic annotation /// 0021895 // cerebral cortex neuron differentiation // not recorded /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0044255 // cellular lipid metabolic process // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // not recorded /// 0048468 // cell development // inferred from electronic annotation /// 0048468 // cell development // not recorded /// 0050905 // neuromuscular process // inferred from electronic annotation /// 0050905 // neuromuscular process // not recorded /// 0051262 // protein tetramerization // inferred from electronic annotation /// 0051262 // protein tetramerization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // not recorded /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0005782 // peroxisomal matrix // inferred from electronic annotation /// 0005782 // peroxisomal matrix // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0005052 // peroxisome matrix targeting signal-1 binding // inferred from electronic annotation /// 0005052 // peroxisome matrix targeting signal-1 binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1371432_at BI284849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284849 /DB_XREF=gi:14937900 /DB_XREF=UI-R-CX0s-ccs-h-12-0-UI.s1 /CLONE=UI-R-CX0s-ccs-h-12-0-UI /FEA=EST /CNT=30 /TID=Rn.9118.1 /TIER=Stack /STK=25 /UG=Rn.9118 /UG_TITLE=ESTs BI284849 vesicle amine transport protein 1 homolog (T californica) Vat1 287721 NM_001033683 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1371433_at BM384999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384999 /DB_XREF=gi:18185052 /DB_XREF=UI-R-CN1-cjm-e-06-0-UI.s2 /CLONE=UI-R-CN1-cjm-e-06-0-UI /FEA=EST /CNT=29 /TID=Rn.8377.1 /TIER=Stack /STK=25 /UG=Rn.8377 /UG_TITLE=ESTs BM384999 1371434_at AI172362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172362 /DB_XREF=gi:3712402 /DB_XREF=EST218366 /CLONE=RMUBY36 /FEA=EST /CNT=29 /TID=Rn.2176.1 /TIER=Stack /STK=25 /UG=Rn.2176 /UG_TITLE=ESTs AI172362 hypothetical protein LOC691807 LOC691807 691807 XM_001079712 /// XM_002726037 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1371435_at BI279561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279561 /DB_XREF=gi:14927494 /DB_XREF=UI-R-DE0-cae-a-02-0-UI.s1 /CLONE=UI-R-DE0-cae-a-02-0-UI /FEA=EST /CNT=48 /TID=Rn.16510.1 /TIER=Stack /STK=25 /UG=Rn.16510 /UG_TITLE=ESTs, Highly similar to T30827 nascent polypeptide-associated complex alpha chain, non-muscle splice form - mouse (M.musculus) BI279561 nascent polypeptide-associated complex alpha subunit Naca 288770 NM_001105939 /// NM_001198562 /// NM_001198580 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003713 // transcription coactivator activity // not recorded /// 0017025 // TATA-binding protein binding // not recorded 1371436_at AI176924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176924 /DB_XREF=gi:3727562 /DB_XREF=EST220530 /CLONE=ROVBY63 /FEA=EST /CNT=29 /TID=Rn.34.1 /TIER=Stack /STK=25 /UG=Rn.34 /UG_TITLE=ESTs, Weakly similar to NG,NG dimethylarginine dimethylaminohydrolase (Rattus norvegicus) (R.norvegicus) AI176924 dimethylarginine dimethylaminohydrolase 2 Ddah2 294239 NM_001165936 /// NM_212532 0000052 // citrulline metabolic process // not recorded /// 0000052 // citrulline metabolic process // inferred from sequence or structural similarity /// 0006525 // arginine metabolic process // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016403 // dimethylargininase activity // inferred from direct assay /// 0016403 // dimethylargininase activity // not recorded /// 0016403 // dimethylargininase activity // inferred from sequence or structural similarity /// 0016403 // dimethylargininase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016813 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines // inferred from electronic annotation 1371437_at BM986228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM986228 /DB_XREF=gi:19705617 /DB_XREF=EST531682 /CLONE=RGIAB07 /FEA=EST /CNT=28 /TID=Rn.1553.1 /TIER=Stack /STK=25 /UG=Rn.1553 /UG_TITLE=ESTs, Highly similar to SC13_HUMAN SEC13-RELATED PROTEIN (H.sapiens) BM986228 SEC13 homolog (S. cerevisiae) Sec13 297522 NM_001006978 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from direct assay /// 0006888 // ER to Golgi vesicle-mediated transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded 0000776 // kinetochore // not recorded /// 0005635 // nuclear envelope // not recorded /// 0031080 // Nup107-160 complex // not recorded /// 0031080 // Nup107-160 complex // inferred from sequence or structural similarity 0005515 // protein binding // not recorded 1371438_at BE113144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113144 /DB_XREF=gi:8505249 /DB_XREF=UI-R-BJ1-awc-a-08-0-UI.s1 /CLONE=UI-R-BJ1-awc-a-08-0-UI /FEA=EST /CNT=28 /TID=Rn.1929.1 /TIER=Stack /STK=25 /UG=Rn.1929 /UG_TITLE=ESTs BE113144 similar to mKIAA0226 protein RGD1305422 303885 XM_001065343 /// XM_002724728 /// XM_002727897 /// XM_221382 0010507 // negative regulation of autophagy // not recorded /// 0045806 // negative regulation of endocytosis // not recorded 0005769 // early endosome // not recorded /// 0005770 // late endosome // not recorded /// 0005794 // Golgi apparatus // not recorded 0005515 // protein binding // not recorded 1371439_at AA894008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894008 /DB_XREF=gi:3020887 /DB_XREF=EST197811 /CLONE=RPLAO52 /FEA=EST /CNT=27 /TID=Rn.11537.1 /TIER=Stack /STK=25 /UG=Rn.11537 /UG_TITLE=ESTs AA894008 Erythrocyte membrane protein band 4.1 Epb4.1 313052 XM_001063302 /// XM_232771 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation /// 0032092 // positive regulation of protein binding // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0019898 // extrinsic to membrane // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // not recorded /// 0043234 // protein complex // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005545 // phosphatidylinositol binding // not recorded 1371440_at AW916647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916647 /DB_XREF=gi:8082377 /DB_XREF=EST347951 /CLONE=RGIDS84 /FEA=EST /CNT=46 /TID=Rn.2199.1 /TIER=Stack /STK=24 /UG=Rn.2199 /UG_TITLE=ESTs AW916647 1371441_at BG662875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG662875 /DB_XREF=gi:13884797 /DB_XREF=DRA04G01 /CLONE=DRA04G01 /FEA=EST /CNT=44 /TID=Rn.2945.1 /TIER=Stack /STK=24 /UG=Rn.2945 /UG_TITLE=ESTs, Weakly similar to mammary transforming protein (M.musculus) BG662875 phosphoprotein enriched in astrocytes 15A Pea15a 364052 NM_001013231 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0043278 // response to morphine // inferred from expression pattern /// 0046325 // negative regulation of glucose import // inferred from electronic annotation /// 0046325 // negative regulation of glucose import // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371442_at BI282904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282904 /DB_XREF=gi:14934132 /DB_XREF=UI-R-CW0s-ccc-g-02-0-UI.s1 /CLONE=UI-R-CW0s-ccc-g-02-0-UI /FEA=EST /CNT=33 /TID=Rn.983.1 /TIER=Stack /STK=24 /UG=Rn.983 /UG_TITLE=ESTs BI282904 hypoxia up-regulated 1 Hyou1 192235 NM_001034028 /// NM_138867 0001666 // response to hypoxia // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1371443_at AI409584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409584 /DB_XREF=gi:4253088 /DB_XREF=EST237876 /CLONE=RKIDU19 /FEA=EST /CNT=30 /TID=Rn.4079.1 /TIER=Stack /STK=24 /UG=Rn.4079 /UG_TITLE=ESTs AI409584 similar to RIKEN cDNA A430005L14 RGD1304567 362671 NM_001009711 1371444_at BI284504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284504 /DB_XREF=gi:14937251 /DB_XREF=UI-R-CX0s-ccr-h-02-0-UI.s1 /CLONE=UI-R-CX0s-ccr-h-02-0-UI /FEA=EST /CNT=29 /TID=Rn.1448.1 /TIER=Stack /STK=24 /UG=Rn.1448 /UG_TITLE=ESTs, Moderately similar to T17453 ERG-associated protein ESET - mouse (M.musculus) BI284504 LAG1 homolog, ceramide synthase 2 Lass2 310667 NM_001033700 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0030148 // sphingolipid biosynthetic process // inferred from electronic annotation /// 0030148 // sphingolipid biosynthetic process // not recorded /// 0046513 // ceramide biosynthetic process // inferred from electronic annotation /// 0046513 // ceramide biosynthetic process // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0050291 // sphingosine N-acyltransferase activity // inferred from electronic annotation /// 0050291 // sphingosine N-acyltransferase activity // not recorded 1371445_at BF285649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285649 /DB_XREF=gi:11216719 /DB_XREF=EST450240 /CLONE=RGIFI04 /FEA=EST /CNT=29 /TID=Rn.2783.1 /TIER=Stack /STK=24 /UG=Rn.2783 /UG_TITLE=ESTs BF285649 leucine rich repeat containing 59 Lrrc59 287633 NM_001008280 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371446_at BI283703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283703 /DB_XREF=gi:14935710 /DB_XREF=UI-R-CW0s-ccg-g-04-0-UI.s1 /CLONE=UI-R-CW0s-ccg-g-04-0-UI /FEA=EST /CNT=28 /TID=Rn.6276.1 /TIER=Stack /STK=24 /UG=Rn.6276 /UG_TITLE=ESTs, Weakly similar to CALCIUMCALMODULIN-DEPENDENT PROTEIN KINASE TYPE II DELTA CHAIN (R.norvegicus) BI283703 mitogen-activated protein kinase-activated protein kinase 2 Mapkapk2 289014 NM_178102 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded /// 0048255 // mRNA stabilization // inferred from electronic annotation /// 0048255 // mRNA stabilization // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1371447_at BG378630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378630 /DB_XREF=gi:13303102 /DB_XREF=UI-R-CV1-bvr-g-03-0-UI.s1 /CLONE=UI-R-CV1-bvr-g-03-0-UI /FEA=EST /CNT=28 /TID=Rn.2649.1 /TIER=Stack /STK=24 /UG=Rn.2649 /UG_TITLE=ESTs BG378630 placenta-specific 8 Plac8 360914 NM_001108353 1371448_at AI599295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599295 /DB_XREF=gi:4608343 /DB_XREF=EST250998 /CLONE=REMEQ51 /FEA=EST /CNT=27 /TID=Rn.11514.1 /TIER=Stack /STK=24 /UG=Rn.11514 /UG_TITLE=ESTs AI599295 1371449_at BM388765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388765 /DB_XREF=gi:18188818 /DB_XREF=UI-R-DZ0-ckn-e-03-0-UI.s1 /CLONE=UI-R-DZ0-ckn-e-03-0-UI /FEA=EST /CNT=27 /TID=Rn.6291.1 /TIER=Stack /STK=24 /UG=Rn.6291 /UG_TITLE=ESTs, Highly similar to JC7136 peptidylprolyl isomerase (EC 5.2.1.8) - mouse (M.musculus) BM388765 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 Pin1 298696 NM_001106701 0006457 // protein folding // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0051443 // positive regulation of ubiquitin-protein ligase activity // not recorded /// 0051443 // positive regulation of ubiquitin-protein ligase activity // inferred from electronic annotation /// 0060393 // regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0060393 // regulation of pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation /// 0050815 // phosphoserine binding // not recorded /// 0050815 // phosphoserine binding // inferred from electronic annotation /// 0050816 // phosphothreonine binding // not recorded /// 0050816 // phosphothreonine binding // inferred from electronic annotation 1371450_at BE117330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117330 /DB_XREF=gi:8509435 /DB_XREF=UI-R-BS1-ayn-e-05-0-UI.s1 /CLONE=UI-R-BS1-ayn-e-05-0-UI /FEA=EST /CNT=26 /TID=Rn.19036.1 /TIER=Stack /STK=24 /UG=Rn.19036 /UG_TITLE=ESTs BE117330 1371451_at AI010940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010940 /DB_XREF=gi:3224772 /DB_XREF=EST205391 /CLONE=RMUAU54 /FEA=EST /CNT=26 /TID=Rn.3693.1 /TIER=Stack /STK=24 /UG=Rn.3693 /UG_TITLE=ESTs, Moderately similar to RNHL_HUMAN RIBONUCLEASE HI LARGE SUBUNIT (H.sapiens) AI010940 ribonuclease H2, subunit A Rnaseh2a 364974 NM_001013234 0016070 // RNA metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004523 // ribonuclease H activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371452_at BE110662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110662 /DB_XREF=gi:8502767 /DB_XREF=UI-R-BJ1-avu-e-10-0-UI.s1 /CLONE=UI-R-BJ1-avu-e-10-0-UI /FEA=EST /CNT=26 /TID=Rn.17661.1 /TIER=Stack /STK=24 /UG=Rn.17661 /UG_TITLE=ESTs, Highly similar to L-arginine: glycine amidinotransferase (Rattus norvegicus) (R.norvegicus) BE110662 ubiquitin-like 7 (bone marrow stromal cell-derived) Ubl7 300744 NM_001004247 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371453_at BE113146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113146 /DB_XREF=gi:8505251 /DB_XREF=UI-R-BJ1-awc-a-10-0-UI.s1 /CLONE=UI-R-BJ1-awc-a-10-0-UI /FEA=EST /CNT=30 /TID=Rn.17054.1 /TIER=Stack /STK=24 /UG=Rn.17054 /UG_TITLE=ESTs, Highly similar to SYFB_MOUSE PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN (PHENYLALANINE--TRNA LIGASE BETA CHAIN) (PHERS) (M.musculus) BE113146 phenylalanyl-tRNA synthetase, beta subunit Farsb 301544 NM_001004252 0006412 // translation // inferred from electronic annotation /// 0006432 // phenylalanyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004826 // phenylalanine-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1371454_at BI285673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285673 /DB_XREF=gi:14939555 /DB_XREF=UI-R-CT0s-cas-b-09-0-UI.s1 /CLONE=UI-R-CT0s-cas-b-09-0-UI /FEA=EST /CNT=27 /TID=Rn.258.1 /TIER=Stack /STK=24 /UG=Rn.258 /UG_TITLE=ESTs BI285673 transmembrane protein 93 Tmem93 287477 NM_001105806 0016021 // integral to membrane // inferred from electronic annotation 1371455_at AI411429 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411429 /DB_XREF=gi:4254933 /DB_XREF=EST239723 /CLONE=RKIES37 /FEA=EST /CNT=25 /TID=Rn.2969.1 /TIER=Stack /STK=24 /UG=Rn.2969 /UG_TITLE=ESTs, Highly similar to PMM1_MOUSE PHOSPHOMANNOMUTASE 1 (PMM 1) (M.musculus) AI411429 phosphomannomutase 1 Pmm1 300089 NM_001008323 0008152 // metabolic process // inferred from electronic annotation /// 0019307 // mannose biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004615 // phosphomannomutase activity // inferred from electronic annotation 1371456_at BI281218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281218 /DB_XREF=gi:14930730 /DB_XREF=UI-R-CT0s-cat-g-07-0-UI.s1 /CLONE=UI-R-CT0s-cat-g-07-0-UI /FEA=EST /CNT=25 /TID=Rn.9387.1 /TIER=Stack /STK=24 /UG=Rn.9387 /UG_TITLE=ESTs, Weakly similar to ATP-binding cassette, sub-family F, member 2 (Homo sapiens) (H.sapiens) BI281218 ATP-binding cassette, sub-family F (GCN20), member 3 Abcf3 287982 NM_001011896 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1371457_at BI291468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291468 /DB_XREF=gi:14951039 /DB_XREF=UI-R-CV2-cgq-f-07-0-UI.s1 /CLONE=UI-R-CV2-cgq-f-07-0-UI /FEA=EST /CNT=24 /TID=Rn.66203.1 /TIER=Stack /STK=24 /UG=Rn.66203 /UG_TITLE=ESTs BI291468 1371458_at BF392740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392740 /DB_XREF=gi:11377602 /DB_XREF=UI-R-CA0-bfm-g-05-0-UI.s1 /CLONE=UI-R-CA0-bfm-g-05-0-UI /FEA=EST /CNT=24 /TID=Rn.63638.1 /TIER=Stack /STK=24 /UG=Rn.63638 /UG_TITLE=ESTs BF392740 1371459_at BF409956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409956 /DB_XREF=gi:11397931 /DB_XREF=UI-R-CA1-bjy-g-07-0-UI.s1 /CLONE=UI-R-CA1-bjy-g-07-0-UI /FEA=EST /CNT=24 /TID=Rn.63657.1 /TIER=Stack /STK=24 /UG=Rn.63657 /UG_TITLE=ESTs BF409956 1371460_at AA859261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859261 /DB_XREF=gi:4229615 /DB_XREF=UI-R-E0-cj-f-05-0-UI.s1 /CLONE=UI-R-E0-cj-f-05-0-UI /FEA=EST /CNT=43 /TID=Rn.2650.1 /TIER=Stack /STK=23 /UG=Rn.2650 /UG_TITLE=ESTs AA859261 hypothetical protein LOC681219 LOC681219 681219 XM_001060794 /// XM_002726973 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1371461_at BF414239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414239 /DB_XREF=gi:11402228 /DB_XREF=UI-R-BJ2-boo-a-10-0-UI.s1 /CLONE=UI-R-BJ2-boo-a-10-0-UI /FEA=EST /CNT=30 /TID=Rn.4186.1 /TIER=Stack /STK=23 /UG=Rn.4186 /UG_TITLE=ESTs BF414239 family with sequence similarity 54, member B Fam54b 298549 NM_001013935 1371462_at BE108969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108969 /DB_XREF=gi:8501074 /DB_XREF=UI-R-BS1-aza-e-04-0-UI.s1 /CLONE=UI-R-BS1-aza-e-04-0-UI /FEA=EST /CNT=30 /TID=Rn.3572.1 /TIER=Stack /STK=23 /UG=Rn.3572 /UG_TITLE=ESTs, Highly similar to 2008109A set gene (R.norvegicus) BE108969 insulin-like growth factor binding protein 4 Igfbp4 360622 NM_001004274 0001558 // regulation of cell growth // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from expression pattern /// 0023034 // intracellular signaling pathway // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005520 // insulin-like growth factor binding // not recorded /// 0005520 // insulin-like growth factor binding // traceable author statement /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation 1371463_at AI233239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233239 /DB_XREF=gi:3817119 /DB_XREF=EST229927 /CLONE=RKIDC59 /FEA=EST /CNT=31 /TID=Rn.9116.1 /TIER=Stack /STK=23 /UG=Rn.9116 /UG_TITLE=ESTs, Highly similar to U123_HUMAN HYPOTHETICAL 12.4 KDA PROTEIN BK223H9.2 (H.sapiens) AI233239 PHD finger protein 5A Phf5a 192246 NM_138888 0000398 // nuclear mRNA splicing, via spliceosome // not recorded /// 0000398 // nuclear mRNA splicing, via spliceosome // inferred from sequence or structural similarity /// 0000398 // nuclear mRNA splicing, via spliceosome // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from direct assay /// 0045941 // positive regulation of transcription // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005686 // U2 snRNP // not recorded /// 0005686 // U2 snRNP // inferred from sequence or structural similarity /// 0005686 // U2 snRNP // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded /// 0016607 // nuclear speck // inferred from sequence or structural similarity /// 0016607 // nuclear speck // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay 1371464_at BI295799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295799 /DB_XREF=gi:14959608 /DB_XREF=UI-R-DK0-cfa-g-06-0-UI.s1 /CLONE=UI-R-DK0-cfa-g-06-0-UI /FEA=EST /CNT=30 /TID=Rn.2902.1 /TIER=Stack /STK=23 /UG=Rn.2902 /UG_TITLE=ESTs BI295799 zinc finger, AN1-type domain 6 Zfand6 293067 NM_001007630 0007165 // signal transduction // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371465_at BM390681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390681 /DB_XREF=gi:18190734 /DB_XREF=UI-R-CN1-cjr-m-14-0-UI.s1 /CLONE=UI-R-CN1-cjr-m-14-0-UI /FEA=EST /CNT=30 /TID=Rn.4094.3 /TIER=Stack /STK=23 /UG=Rn.4094 /LL=60465 /UG_GENE=Cttnb /UG_TITLE=cortactin isoform B BM390681 cortactin Cttn 60465 NM_021868 0006898 // receptor-mediated endocytosis // inferred from direct assay 0001726 // ruffle // not recorded /// 0005737 // cytoplasm // not recorded /// 0005938 // cell cortex // not recorded /// 0030027 // lamellipodium // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1371466_at AI177397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177397 /DB_XREF=gi:3728035 /DB_XREF=EST221017 /CLONE=RPLBY59 /FEA=EST /CNT=36 /TID=Rn.8274.1 /TIER=Stack /STK=23 /UG=Rn.8274 /UG_TITLE=ESTs, Weakly similar to W05H7.3.p (Caenorhabditis elegans) (C.elegans) AI177397 trafficking protein particle complex 2 Trappc2 501550 NM_001024965 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0030008 // TRAPP complex // not recorded 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded 1371467_at AA891221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891221 /DB_XREF=gi:3018100 /DB_XREF=EST195024 /CLONE=RHEAQ70 /FEA=EST /CNT=29 /TID=Rn.1978.1 /TIER=Stack /STK=23 /UG=Rn.1978 /UG_TITLE=ESTs, Weakly similar to T32619 hypothetical protein F42A6.6 - Caenorhabditis elegans (C.elegans) AA891221 similar to RIKEN cDNA 0610007P06 LOC293103 293103 NM_001013897 0007030 // Golgi organization // inferred from electronic annotation /// 0007030 // Golgi organization // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1371468_at BI296378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296378 /DB_XREF=gi:14960743 /DB_XREF=UI-R-DK0-cez-f-09-0-UI.s1 /CLONE=UI-R-DK0-cez-f-09-0-UI /FEA=EST /CNT=26 /TID=Rn.3496.1 /TIER=Stack /STK=23 /UG=Rn.3496 /UG_TITLE=ESTs BI296378 similar to RAB11 family interacting protein 5 (class I) isoform 1 LOC312502 312502 XR_005948 /// XR_085818 1371469_at BM958511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM958511 /DB_XREF=gi:19541941 /DB_XREF=EST /FEA=EST /CNT=26 /TID=Rn.4078.1 /TIER=Stack /STK=23 /UG=Rn.4078 /UG_TITLE=ESTs BM958511 calcium binding protein p22 Chp 64152 NM_024139 0017156 // calcium ion-dependent exocytosis // inferred from direct assay /// 0019722 // calcium-mediated signaling // traceable author statement /// 0045056 // transcytosis // inferred from genetic interaction 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1371470_at AI411895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411895 /DB_XREF=gi:4255399 /DB_XREF=EST240189 /CLONE=RKIEK01 /FEA=EST /CNT=25 /TID=Rn.3157.1 /TIER=Stack /STK=23 /UG=Rn.3157 /UG_TITLE=ESTs, Highly similar to ADHX RAT ALCOHOL DEHYDROGENASE CLASS III (R.norvegicus) AI411895 alcohol dehydrogenase 5 Adh5 100145871 NM_001126120 0001523 // retinoid metabolic process // not recorded /// 0001523 // retinoid metabolic process // inferred from electronic annotation /// 0003016 // respiratory system process // not recorded /// 0003016 // respiratory system process // inferred from electronic annotation /// 0006069 // ethanol oxidation // inferred from electronic annotation /// 0006069 // ethanol oxidation // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0018119 // peptidyl-cysteine S-nitrosylation // not recorded /// 0018119 // peptidyl-cysteine S-nitrosylation // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0042698 // ovulation cycle // inferred from expression pattern /// 0045777 // positive regulation of blood pressure // not recorded /// 0045777 // positive regulation of blood pressure // inferred from electronic annotation /// 0046294 // formaldehyde catabolic process // not recorded /// 0046294 // formaldehyde catabolic process // inferred from electronic annotation /// 0051409 // response to nitrosative stress // not recorded /// 0051409 // response to nitrosative stress // inferred from electronic annotation /// 0051775 // response to redox state // not recorded /// 0051775 // response to redox state // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004022 // alcohol dehydrogenase (NAD) activity // inferred from electronic annotation /// 0004022 // alcohol dehydrogenase (NAD) activity // not recorded /// 0004022 // alcohol dehydrogenase (NAD) activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005504 // fatty acid binding // not recorded /// 0005504 // fatty acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0018467 // formaldehyde dehydrogenase activity // not recorded /// 0018467 // formaldehyde dehydrogenase activity // inferred from electronic annotation /// 0035276 // ethanol binding // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from direct assay /// 0051903 // S-(hydroxymethyl)glutathione dehydrogenase activity // inferred from electronic annotation /// 0051903 // S-(hydroxymethyl)glutathione dehydrogenase activity // not recorded 1371471_at BF281741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281741 /DB_XREF=gi:11212811 /DB_XREF=EST446332 /CLONE=RGIAQ27 /FEA=EST /CNT=25 /TID=Rn.8075.1 /TIER=Stack /STK=23 /UG=Rn.8075 /UG_TITLE=ESTs, Moderately similar to T34536 hypothetical protein DKFZp434C031.1 (H.sapiens) BF281741 glioma tumor suppressor candidate region gene 2 Gltscr2 292624 NM_207591 1371472_at BG380581 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380581 /DB_XREF=gi:13305053 /DB_XREF=UI-R-CT0-btz-a-05-0-UI.s1 /CLONE=UI-R-CT0-btz-a-05-0-UI /FEA=EST /CNT=25 /TID=Rn.19113.1 /TIER=Stack /STK=23 /UG=Rn.19113 /UG_TITLE=ESTs BG380581 1371473_at BI284472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284472 /DB_XREF=gi:14937183 /DB_XREF=UI-R-CX0s-ccr-e-02-0-UI.s1 /CLONE=UI-R-CX0s-ccr-e-02-0-UI /FEA=EST /CNT=28 /TID=Rn.8842.1 /TIER=Stack /STK=23 /UG=Rn.8842 /UG_TITLE=ESTs, Weakly similar to T24228 hypothetical protein R166.2 - Caenorhabditis elegans (C.elegans) BI284472 cleft lip and palate associated transmembrane protein 1 Clptm1 292696 NM_001106232 0033081 // regulation of T cell differentiation in thymus // inferred from electronic annotation /// 0033081 // regulation of T cell differentiation in thymus // not recorded 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 1371474_at BG665132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665132 /DB_XREF=gi:13887054 /DB_XREF=DRABYH07 /CLONE=DRABYH07 /FEA=EST /CNT=26 /TID=Rn.6426.1 /TIER=Stack /STK=23 /UG=Rn.6426 /UG_TITLE=ESTs, Highly similar to mitochondrial carrier homolog 1 (M.musculus) BG665132 mitochondrial carrier homolog 1 (C. elegans) Mtch1 294313 NM_001100833 0006810 // transport // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371475_at BI284831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284831 /DB_XREF=gi:14937865 /DB_XREF=UI-R-CX0s-ccs-g-04-0-UI.s1 /CLONE=UI-R-CX0s-ccs-g-04-0-UI /FEA=EST /CNT=25 /TID=Rn.1742.1 /TIER=Stack /STK=23 /UG=Rn.1742 /UG_TITLE=ESTs BI284831 ribonuclease, RNase A family 4 Rnase4 56759 NM_020082 0001525 // angiogenesis // inferred from sequence or structural similarity /// 0001666 // response to hypoxia // inferred from sequence or structural similarity /// 0001889 // liver development // inferred from expression pattern /// 0001938 // positive regulation of endothelial cell proliferation // inferred from sequence or structural similarity /// 0006651 // diacylglycerol biosynthetic process // inferred from sequence or structural similarity /// 0007202 // activation of phospholipase C activity // inferred from direct assay /// 0007202 // activation of phospholipase C activity // inferred from sequence or structural similarity /// 0009303 // rRNA transcription // inferred from sequence or structural similarity /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0030041 // actin filament polymerization // inferred from sequence or structural similarity /// 0032431 // activation of phospholipase A2 activity // inferred from sequence or structural similarity /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from sequence or structural similarity /// 0050714 // positive regulation of protein secretion // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005605 // basal lamina // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from direct assay /// 0032311 // angiogenin-PRI complex // inferred from sequence or structural similarity /// 0033178 // proton-transporting two-sector ATPase complex, catalytic domain // inferred from electronic annotation /// 0033180 // proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from sequence or structural similarity /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004522 // pancreatic ribonuclease activity // inferred from electronic annotation /// 0004540 // ribonuclease activity // inferred from sequence or structural similarity /// 0005102 // receptor binding // inferred from sequence or structural similarity /// 0005507 // copper ion binding // inferred from sequence or structural similarity /// 0008201 // heparin binding // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046933 // hydrogen ion transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 1371476_at AI411531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411531 /DB_XREF=gi:4255035 /DB_XREF=EST239825 /CLONE=RKIEK52 /FEA=EST /CNT=24 /TID=Rn.7506.1 /TIER=Stack /STK=23 /UG=Rn.7506 /UG_TITLE=ESTs AI411531 COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis) Cops4 360915 NM_001004275 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0008180 // signalosome // inferred from electronic annotation /// 0008180 // signalosome // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371477_at BG380735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380735 /DB_XREF=gi:13305207 /DB_XREF=UI-R-CT0-bua-g-11-0-UI.s1 /CLONE=UI-R-CT0-bua-g-11-0-UI /FEA=EST /CNT=23 /TID=Rn.18132.1 /TIER=Stack /STK=23 /UG=Rn.18132 /UG_TITLE=ESTs BG380735 1371478_at AI409756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409756 /DB_XREF=gi:4253260 /DB_XREF=EST238049 /CLONE=RPLDI65 /FEA=EST /CNT=23 /TID=Rn.11832.1 /TIER=Stack /STK=23 /UG=Rn.11832 /UG_TITLE=ESTs, Weakly similar to T31718 hypothetical protein F44E7.9 - Caenorhabditis elegans (C.elegans) AI409756 similar to RIKEN cDNA 1110008F13 RGD1307752 296315 NM_001013922 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // not recorded 1371479_at AA946026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946026 /DB_XREF=gi:3105942 /DB_XREF=EST201525 /CLONE=RLUBA30 /FEA=EST /CNT=43 /TID=Rn.3341.1 /TIER=Stack /STK=22 /UG=Rn.3341 /UG_TITLE=ESTs, Moderately similar to T08785 hypothetical protein DKFZp586A0522.1 (H.sapiens) AA946026 methyltransferase like 7A Mettl7a 315306 NM_001037355 0008152 // metabolic process // inferred from electronic annotation 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1371480_at AI407985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407985 /DB_XREF=gi:4251489 /DB_XREF=EST236275 /CLONE=RPLDJ19 /FEA=EST /CNT=32 /TID=Rn.91.1 /TIER=Stack /STK=22 /UG=Rn.91 /UG_TITLE=ESTs, Highly similar to CDC28 protein kinase 1; cyclin-dependent kinase regulatory subunit 1 (Mus musculus) (M.musculus) AI407985 CDC28 protein kinase regulatory subunit 1B Cks1b 499655 NM_001135749 0007049 // cell cycle // inferred from electronic annotation 0005654 // nucleoplasm // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016538 // cyclin-dependent protein kinase regulator activity // inferred from electronic annotation 1371481_at BI274372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274372 /DB_XREF=gi:14885236 /DB_XREF=UI-R-CW0-bwi-b-08-0-UI.s1 /CLONE=UI-R-CW0-bwi-b-08-0-UI /FEA=EST /CNT=33 /TID=Rn.40477.1 /TIER=Stack /STK=22 /UG=Rn.40477 /UG_TITLE=ESTs, Highly similar to POLYPOSIS LOCUS PROTEIN 1 HOMOLOG (M.musculus) BI274372 receptor accessory protein 5 Reep5 364838 NM_001108888 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371482_at AA851675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851675 /DB_XREF=gi:2939215 /DB_XREF=EST194443 /CLONE=RPLAL35 /FEA=EST /CNT=34 /TID=Rn.4045.1 /TIER=Stack /STK=22 /UG=Rn.4045 /UG_TITLE=ESTs, Highly similar to NUCM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNIT PRECURSOR (H.sapiens) AA851675 NADH dehydrogenase (ubiquinone) Fe-S protein 2 Ndufs2 289218 NM_001011907 0006810 // transport // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0022900 // electron transport chain // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0003954 // NADH dehydrogenase activity // inferred from electronic annotation /// 0003954 // NADH dehydrogenase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016651 // oxidoreductase activity, acting on NADH or NADPH // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048038 // quinone binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 1371483_at AA891872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891872 /DB_XREF=gi:3018751 /DB_XREF=EST195675 /CLONE=RKIAH93 /FEA=EST /CNT=33 /TID=Rn.3128.1 /TIER=Stack /STK=22 /UG=Rn.3128 /UG_TITLE=ESTs, Highly similar to NNTM MOUSE NAD(P) TRANSHYDROGENASE, MITOCHONDRIAL PRECURSOR (M.musculus) AA891872 nicotinamide nucleotide transhydrogenase Nnt 310378 NM_001013157 0008152 // metabolic process // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008746 // NAD(P)+ transhydrogenase activity // inferred from electronic annotation /// 0008750 // NAD(P)+ transhydrogenase (AB-specific) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // not recorded 1371484_at BM390252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390252 /DB_XREF=gi:18190305 /DB_XREF=UI-R-CN1-cjq-m-07-0-UI.s1 /CLONE=UI-R-CN1-cjq-m-07-0-UI /FEA=EST /CNT=28 /TID=Rn.1686.1 /TIER=Stack /STK=22 /UG=Rn.1686 /UG_TITLE=ESTs BM390252 hypothetical protein LOC690349 LOC690349 690349 NM_001109581 1371485_at BI283695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283695 /DB_XREF=gi:14935695 /DB_XREF=UI-R-CW0s-ccg-f-06-0-UI.s1 /CLONE=UI-R-CW0s-ccg-f-06-0-UI /FEA=EST /CNT=27 /TID=Rn.2686.1 /TIER=Stack /STK=22 /UG=Rn.2686 /UG_TITLE=ESTs, Highly similar to T00056 hypothetical protein KIAA0418 (H.sapiens) BI283695 1371486_at BG380657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380657 /DB_XREF=gi:13305129 /DB_XREF=UI-R-CT0-btz-h-05-0-UI.s1 /CLONE=UI-R-CT0-btz-h-05-0-UI /FEA=EST /CNT=28 /TID=Rn.2786.1 /TIER=Stack /STK=22 /UG=Rn.2786 /UG_TITLE=ESTs, Highly similar to RU1C MOUSE U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C (M.musculus) BG380657 small nuclear ribonucleoprotein polypeptide C Snrpc 361808 XM_001078182 /// XM_002725843 /// XM_002728920 /// XM_342101 0000387 // spliceosomal snRNP assembly // not recorded /// 0000398 // nuclear mRNA splicing, via spliceosome // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005685 // U1 snRNP // inferred from electronic annotation /// 0005685 // U1 snRNP // not recorded /// 0015030 // Cajal body // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003727 // single-stranded RNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0030619 // U1 snRNA binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1371487_at BG666075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666075 /DB_XREF=gi:13887997 /DB_XREF=DRACNB01 /CLONE=DRACNB01 /FEA=EST /CNT=27 /TID=Rn.18564.1 /TIER=Stack /STK=22 /UG=Rn.18564 /UG_TITLE=ESTs, Weakly similar to SH3B_MOUSE SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH PROTEIN (SH3BGR PROTEIN) (M.musculus) BG666075 SH3 domain binding glutamic acid-rich protein-like 3 Sh3bgrl3 298544 NM_001106688 0045454 // cell redox homeostasis // inferred from electronic annotation 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation 1371488_at AW915978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915978 /DB_XREF=gi:8081692 /DB_XREF=EST347282 /CLONE=RGIDE46 /FEA=EST /CNT=29 /TID=Rn.3527.1 /TIER=Stack /STK=22 /UG=Rn.3527 /UG_TITLE=ESTs, Weakly similar to T30021 hypothetical protein K08F11.4 - Caenorhabditis elegans (C.elegans) AW915978 RGD1562079 RGD1562079 499125 NM_001177687 /// XM_002725563 /// XM_579917 0034553 // mitochondrial respiratory chain complex II assembly // not recorded /// 0034553 // mitochondrial respiratory chain complex II assembly // inferred from electronic annotation /// 0034553 // mitochondrial respiratory chain complex II assembly // inferred from sequence or structural similarity 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005759 // mitochondrial matrix // inferred from electronic annotation 1371489_at AI011748 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011748 /DB_XREF=gi:3225580 /DB_XREF=EST206199 /CLONE=ROVAZ63 /FEA=EST /CNT=26 /TID=Rn.17423.1 /TIER=Stack /STK=22 /UG=Rn.17423 /UG_TITLE=ESTs AI011748 1371490_at BG666149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666149 /DB_XREF=gi:13888071 /DB_XREF=DRACQD05 /CLONE=DRACQD05 /FEA=EST /CNT=30 /TID=Rn.2578.1 /TIER=Stack /STK=22 /UG=Rn.2578 /UG_TITLE=ESTs, Moderately similar to heat shock factor binding protein 1 HSBP1 (H.sapiens) BG666149 heat shock factor binding protein 1 Hsbp1 286899 NM_173119 0006936 // muscle contraction // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from direct assay 1371491_at BM390614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390614 /DB_XREF=gi:18190667 /DB_XREF=UI-R-CN1-cjr-a-16-0-UI.s1 /CLONE=UI-R-CN1-cjr-a-16-0-UI /FEA=EST /CNT=27 /TID=Rn.25046.1 /TIER=Stack /STK=22 /UG=Rn.25046 /UG_TITLE=ESTs BM390614 Notch homolog 1, translocation-associated (Drosophila) Notch1 25496 NM_001105721 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001708 // cell fate specification // inferred from electronic annotation /// 0001708 // cell fate specification // not recorded /// 0001837 // epithelial to mesenchymal transition // inferred from electronic annotation /// 0001837 // epithelial to mesenchymal transition // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0002040 // sprouting angiogenesis // inferred from electronic annotation /// 0002040 // sprouting angiogenesis // not recorded /// 0002052 // positive regulation of neuroblast proliferation // inferred from mutant phenotype /// 0003160 // endocardium morphogenesis // inferred from electronic annotation /// 0003160 // endocardium morphogenesis // not recorded /// 0003180 // aortic valve morphogenesis // inferred from electronic annotation /// 0003180 // aortic valve morphogenesis // not recorded /// 0003264 // regulation of cardioblast proliferation // inferred from mutant phenotype /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from mutant phenotype /// 0007221 // positive regulation of transcription of Notch receptor target // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from mutant phenotype /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // not recorded /// 0007386 // compartment pattern formation // inferred from electronic annotation /// 0007386 // compartment pattern formation // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007440 // foregut morphogenesis // inferred from electronic annotation /// 0007440 // foregut morphogenesis // not recorded /// 0007492 // endoderm development // inferred from electronic annotation /// 0007492 // endoderm development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008544 // epidermis development // inferred from electronic annotation /// 0008544 // epidermis development // not recorded /// 0009790 // embryo development // inferred from direct assay /// 0010001 // glial cell differentiation // not recorded /// 0010001 // glial cell differentiation // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010812 // negative regulation of cell-substrate adhesion // not recorded /// 0014807 // regulation of somitogenesis // inferred from electronic annotation /// 0014807 // regulation of somitogenesis // not recorded /// 0021515 // cell differentiation in spinal cord // inferred from expression pattern /// 0021915 // neural tube development // inferred from electronic annotation /// 0021915 // neural tube development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // not recorded /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0031960 // response to corticosteroid stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032582 // negative regulation of gene-specific transcription // inferred from electronic annotation /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0042127 // regulation of cell proliferation // inferred from mutant phenotype /// 0042246 // tissue regeneration // inferred from expression pattern /// 0042640 // anagen // inferred from electronic annotation /// 0042640 // anagen // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045603 // positive regulation of endothelial cell differentiation // inferred from mutant phenotype /// 0045618 // positive regulation of keratinocyte differentiation // inferred from electronic annotation /// 0045618 // positive regulation of keratinocyte differentiation // not recorded /// 0045662 // negative regulation of myoblast differentiation // inferred from electronic annotation /// 0045662 // negative regulation of myoblast differentiation // not recorded /// 0045665 // negative regulation of neuron differentiation // inferred from mutant phenotype /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045668 // negative regulation of osteoblast differentiation // inferred from electronic annotation /// 0045668 // negative regulation of osteoblast differentiation // not recorded /// 0045687 // positive regulation of glial cell differentiation // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046533 // negative regulation of photoreceptor cell differentiation // inferred from electronic annotation /// 0046533 // negative regulation of photoreceptor cell differentiation // not recorded /// 0048103 // somatic stem cell division // inferred from electronic annotation /// 0048103 // somatic stem cell division // not recorded /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0048708 // astrocyte differentiation // inferred from direct assay /// 0048709 // oligodendrocyte differentiation // inferred from expression pattern /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // not recorded /// 0050678 // regulation of epithelial cell proliferation // not recorded /// 0050678 // regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050767 // regulation of neurogenesis // inferred from electronic annotation /// 0050767 // regulation of neurogenesis // not recorded /// 0050793 // regulation of developmental process // inferred from electronic annotation /// 0060528 // secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development // inferred from electronic annotation /// 0060528 // secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development // not recorded /// 0060548 // negative regulation of cell death // inferred from electronic annotation /// 0060548 // negative regulation of cell death // not recorded /// 0060740 // prostate gland epithelium morphogenesis // inferred from electronic annotation /// 0060740 // prostate gland epithelium morphogenesis // not recorded /// 0060768 // regulation of epithelial cell proliferation involved in prostate gland development // inferred from electronic annotation /// 0060768 // regulation of epithelial cell proliferation involved in prostate gland development // not recorded 0001669 // acrosomal vesicle // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0031490 // chromatin DNA binding // inferred from electronic annotation /// 0031490 // chromatin DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1371492_at BF285350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285350 /DB_XREF=gi:11216420 /DB_XREF=EST449941 /CLONE=RGIFD94 /FEA=EST /CNT=26 /TID=Rn.8489.1 /TIER=Stack /STK=22 /UG=Rn.8489 /UG_TITLE=ESTs, Weakly similar to APOLIPOPROTEIN B MRNA EDITING PROTEIN (R.norvegicus) BF285350 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2 Apobec2 301226 NM_001106883 0016556 // mRNA modification // inferred from electronic annotation /// 0016556 // mRNA modification // not recorded 0008270 // zinc ion binding // inferred from electronic annotation /// 0016814 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines // inferred from electronic annotation 1371493_at BI285640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285640 /DB_XREF=gi:14939491 /DB_XREF=UI-R-DD0-bzv-d-02-0-UI.s1 /CLONE=UI-R-DD0-bzv-d-02-0-UI /FEA=EST /CNT=24 /TID=Rn.37686.1 /TIER=Stack /STK=22 /UG=Rn.37686 /UG_TITLE=ESTs, Moderately similar to ALPHA-ADAPTIN C (R.norvegicus) BI285640 Adaptor-related protein complex 2, alpha 2 subunit Ap2a2 81637 NM_031008 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0050690 // regulation of defense response to virus by virus // not recorded 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030117 // membrane coat // not recorded /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 1371494_at BE110614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110614 /DB_XREF=gi:8502719 /DB_XREF=UI-R-BJ1-avu-a-07-0-UI.s1 /CLONE=UI-R-BJ1-avu-a-07-0-UI /FEA=EST /CNT=24 /TID=Rn.14639.1 /TIER=Stack /STK=22 /UG=Rn.14639 /UG_TITLE=ESTs BE110614 1371495_at AA943990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943990 /DB_XREF=gi:4132383 /DB_XREF=EST199489 /CLONE=REMAA16 /FEA=EST /CNT=29 /TID=Rn.4133.1 /TIER=Stack /STK=22 /UG=Rn.4133 /UG_TITLE=ESTs AA943990 mannose-6-phosphate receptor, cation dependent M6pr 312689 NM_001007700 0006810 // transport // inferred from electronic annotation /// 0015761 // mannose transport // inferred from electronic annotation 0000323 // lytic vacuole // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005770 // late endosome // not recorded /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005537 // mannose binding // inferred from electronic annotation /// 0015578 // mannose transmembrane transporter activity // inferred from electronic annotation 1371496_at AI178804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178804 /DB_XREF=gi:3729442 /DB_XREF=EST222486 /CLONE=RSPBM81 /FEA=EST /CNT=23 /TID=Rn.13458.1 /TIER=Stack /STK=22 /UG=Rn.13458 /UG_TITLE=ESTs AI178804 rCG29408-like LOC100366121 100366121 XM_002726871 1371497_at BF393085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393085 /DB_XREF=gi:11377945 /DB_XREF=UI-R-CA0-bgu-d-02-0-UI.s1 /CLONE=UI-R-CA0-bgu-d-02-0-UI /FEA=EST /CNT=23 /TID=Rn.34544.1 /TIER=Stack /STK=22 /UG=Rn.34544 /UG_TITLE=ESTs BF393085 ankyrin repeat and SOCS box-containing 6 Asb6 296627 NM_001011963 0023034 // intracellular signaling pathway // inferred from electronic annotation 1371498_at AI412685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412685 /DB_XREF=gi:4256189 /DB_XREF=EST240984 /CLONE=RBRDK17 /FEA=EST /CNT=23 /TID=Rn.3333.1 /TIER=Stack /STK=22 /UG=Rn.3333 /UG_TITLE=ESTs, Moderately similar to JTV1; hypothetical protein PRO0992 (Homo sapiens) (H.sapiens) AI412685 aminoacyl tRNA synthetase complex-interacting multifunctional protein 2 Aimp2 288480 NM_001037348 0006412 // translation // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371499_at AI227627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227627 /DB_XREF=gi:3811514 /DB_XREF=EST224322 /CLONE=RBRCJ45 /FEA=EST /CNT=27 /TID=Rn.2091.1 /TIER=Stack /STK=22 /UG=Rn.2091 /UG_TITLE=ESTs, Highly similar to CD9 ANTIGEN (R.norvegicus) AI227627 CD9 molecule Cd9 24936 NM_053018 0006928 // cellular component movement // not recorded /// 0006928 // cellular component movement // inferred from sequence or structural similarity /// 0007155 // cell adhesion // not recorded /// 0007155 // cell adhesion // inferred from sequence or structural similarity /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007338 // single fertilization // inferred from electronic annotation /// 0007342 // fusion of sperm to egg plasma membrane // not recorded /// 0007342 // fusion of sperm to egg plasma membrane // inferred from sequence or structural similarity /// 0007342 // fusion of sperm to egg plasma membrane // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009414 // response to water deprivation // inferred from expression pattern /// 0014003 // oligodendrocyte development // inferred from expression pattern /// 0030913 // paranodal junction assembly // not recorded /// 0030913 // paranodal junction assembly // inferred from sequence or structural similarity /// 0030913 // paranodal junction assembly // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0031092 // platelet alpha granule membrane // not recorded 0005178 // integrin binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1371500_at BG375362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375362 /DB_XREF=gi:13299834 /DB_XREF=UI-R-CV1-bsz-e-06-0-UI.s1 /CLONE=UI-R-CV1-bsz-e-06-0-UI /FEA=EST /CNT=26 /TID=Rn.7961.1 /TIER=Stack /STK=22 /UG=Rn.7961 /UG_TITLE=ESTs, Weakly similar to transforming growth factor-beta (TGF-beta) masking protein large subunit (Rattus norvegicus) (R.norvegicus) BG375362 latent transforming growth factor beta binding protein 4 Ltbp4 292734 NM_001170336 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0030162 // regulation of proteolysis // not recorded /// 0046879 // hormone secretion // not recorded 0005578 // proteinaceous extracellular matrix // not recorded /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0050431 // transforming growth factor beta binding // not recorded 1371501_at BI291351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291351 /DB_XREF=gi:14950800 /DB_XREF=UI-R-CV2-cgp-a-03-0-UI.s1 /CLONE=UI-R-CV2-cgp-a-03-0-UI /FEA=EST /CNT=22 /TID=Rn.66558.1 /TIER=Stack /STK=22 /UG=Rn.66558 /UG_TITLE=ESTs BI291351 1371502_at AI103666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103666 /DB_XREF=gi:3708192 /DB_XREF=EST212955 /CLONE=REMCE90 /FEA=EST /CNT=22 /TID=Rn.17083.1 /TIER=Stack /STK=22 /UG=Rn.17083 /UG_TITLE=ESTs, Weakly similar to cold inducible RNA-binding protein (Rattus norvegicus) (R.norvegicus) AI103666 RNA binding motif protein 42 Rbm42 361545 NM_001014159 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1371503_at BI289647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289647 /DB_XREF=gi:14947430 /DB_XREF=UI-R-DK0-cfi-d-12-0-UI.s1 /CLONE=UI-R-DK0-cfi-d-12-0-UI /FEA=EST /CNT=22 /TID=Rn.1758.1 /TIER=Stack /STK=22 /UG=Rn.1758 /UG_TITLE=ESTs, Moderately similar to NBP_HUMAN NUCLEOTIDE-BINDING PROTEIN (H.sapiens) BI289647 nucleotide binding protein 1 Nubp1 287042 NM_001009619 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // not recorded /// 0016049 // cell growth // inferred from electronic annotation /// 0016049 // cell growth // not recorded /// 0016226 // iron-sulfur cluster assembly // not recorded /// 0016226 // iron-sulfur cluster assembly // inferred from sequence or structural similarity /// 0016226 // iron-sulfur cluster assembly // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // not recorded /// 0051536 // iron-sulfur cluster binding // inferred from sequence or structural similarity /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 1371504_at BF281215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281215 /DB_XREF=gi:11212201 /DB_XREF=EST445722 /CLONE=RGIAA37 /FEA=EST /CNT=49 /TID=Rn.991.1 /TIER=Stack /STK=21 /UG=Rn.991 /UG_TITLE=ESTs, Highly similar to 60S RIBOSOMAL PROTEIN L37A (R.norvegicus) BF281215 similar to 60S ribosomal protein L37a /// ribosomal protein L37a LOC679823 /// Rpl37a 363248 /// 679823 NM_001100994 /// NM_001108801 /// XM_001054789 /// XM_002724480 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371505_at BG381750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381750 /DB_XREF=gi:13306222 /DB_XREF=UI-R-CT0-buf-a-09-0-UI.s1 /CLONE=UI-R-CT0-buf-a-09-0-UI /FEA=EST /CNT=47 /TID=Rn.69.2 /TIER=Stack /STK=21 /UG=Rn.69 /LL=81822 /UG_GENE=Actx /UG_TITLE=cytoplasmic beta-actin BG381750 heterogeneous nuclear ribonucleoprotein C (C1/C2) Hnrnpc 290046 NM_001025633 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded /// 0005681 // spliceosomal complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0045120 // pronucleus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1371506_at AA891207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891207 /DB_XREF=gi:3018086 /DB_XREF=EST195010 /CLONE=RHEAQ52 /FEA=EST /CNT=31 /TID=Rn.3957.1 /TIER=Stack /STK=21 /UG=Rn.3957 /UG_TITLE=ESTs AA891207 1371507_at BM384151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384151 /DB_XREF=gi:18184204 /DB_XREF=UI-R-DZ0-cks-p-15-0-UI.s1 /CLONE=UI-R-DZ0-cks-p-15-0-UI /FEA=EST /CNT=33 /TID=Rn.17118.1 /TIER=Stack /STK=21 /UG=Rn.17118 /UG_TITLE=ESTs BM384151 1371508_at AI412098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412098 /DB_XREF=gi:4255602 /DB_XREF=EST240392 /CLONE=RKIEJ68 /FEA=EST /CNT=28 /TID=Rn.1072.2 /TIER=Stack /STK=21 /UG=Rn.1072 /UG_TITLE=Rattus norvegicus myosin heavy chain mRNA, 3 end AI412098 1371509_at BG666773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666773 /DB_XREF=gi:13888695 /DB_XREF=DRABWC12 /CLONE=DRABWC12 /FEA=EST /CNT=32 /TID=Rn.127.1 /TIER=Stack /STK=21 /UG=Rn.127 /UG_TITLE=ESTs, Weakly similar to T03454 ALR protein (H.sapiens) BG666773 transforming growth factor beta regulator 1 Tbrg1 300521 NM_001009344 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0032066 // nucleolus to nucleoplasm transport // inferred from electronic annotation /// 0032066 // nucleolus to nucleoplasm transport // not recorded /// 0050821 // protein stabilization // inferred from electronic annotation /// 0050821 // protein stabilization // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371510_at AA944494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944494 /DB_XREF=gi:4132413 /DB_XREF=EST199993 /CLONE=REMAK09 /FEA=EST /CNT=30 /TID=Rn.1003.1 /TIER=Stack /STK=21 /UG=Rn.1003 /UG_TITLE=ESTs AA944494 host cell factor C1 regulator 1 (XPO1-dependent) Hcfc1r1 287097 NM_001100492 /// NM_001185047 /// XM_001055621 /// XM_002724660 /// XM_002724661 /// XM_573052 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 1371511_at AI009775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009775 /DB_XREF=gi:3223607 /DB_XREF=EST204226 /CLONE=RLUBO31 /FEA=EST /CNT=28 /TID=Rn.7952.1 /TIER=Stack /STK=21 /UG=Rn.7952 /UG_TITLE=ESTs, Highly similar to AR34_HUMAN ARP23 COMPLEX 34 KD SUBUNIT (H.sapiens) AI009775 actin related protein 2/3 complex, subunit 2 Arpc2 301511 NM_001106919 0030833 // regulation of actin filament polymerization // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0031252 // cell leading edge // inferred from electronic annotation /// 0031252 // cell leading edge // not recorded /// 0042995 // cell projection // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371512_at AA818692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818692 /DB_XREF=gi:4225844 /DB_XREF=UI-R-A0-az-b-10-0-UI.s1 /CLONE=UI-R-A0-az-b-10-0-UI /FEA=EST /CNT=26 /TID=Rn.1432.1 /TIER=Stack /STK=21 /UG=Rn.1432 /UG_TITLE=ESTs, Moderately similar to ribosomal protein L33-like protein (H.sapiens) AA818692 mitochondrial ribosomal protein L33-like LOC100363539 100363539 XM_002726702 /// XM_002729600 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1371513_at BG378743 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378743 /DB_XREF=gi:13303215 /DB_XREF=UI-R-CV1-bvs-c-12-0-UI.s1 /CLONE=UI-R-CV1-bvs-c-12-0-UI /FEA=EST /CNT=27 /TID=Rn.7217.1 /TIER=Stack /STK=21 /UG=Rn.7217 /UG_TITLE=ESTs BG378743 1371514_at BI278612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278612 /DB_XREF=gi:14925631 /DB_XREF=UI-R-CW0-bxn-g-04-0-UI.s1 /CLONE=UI-R-CW0-bxn-g-04-0-UI /FEA=EST /CNT=27 /TID=Rn.1819.1 /TIER=Stack /STK=21 /UG=Rn.1819 /UG_TITLE=ESTs, Highly similar to S13293 KDEL receptor (H.sapiens) BI278612 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 Kdelr1 361577 NM_001017385 0006621 // protein retention in ER lumen // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046923 // ER retention sequence binding // inferred from electronic annotation 1371515_at AI100773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI100773 /DB_XREF=gi:4133951 /DB_XREF=EST210062 /CLONE=RBRBA09 /FEA=EST /CNT=25 /TID=Rn.814.1 /TIER=Stack /STK=21 /UG=Rn.814 /UG_TITLE=ESTs, Weakly similar to T27174 hypothetical protein Y54G11A.11 - Caenorhabditis elegans (C.elegans) AI100773 elongation factor 1 homolog (S. cerevisiae) Elof1 691193 NM_001126098 1371516_at BM391834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391834 /DB_XREF=gi:18191887 /DB_XREF=UI-R-DO1-cmk-f-06-0-UI.s1 /CLONE=UI-R-DO1-cmk-f-06-0-UI /FEA=EST /CNT=32 /TID=Rn.32535.1 /TIER=Stack /STK=21 /UG=Rn.32535 /UG_TITLE=ESTs, Highly similar to RAN binding protein 16 (Mus musculus) (M.musculus) BM391834 exportin 7 Xpo7 361070 NM_001108386 0006611 // protein export from nucleus // not recorded /// 0006886 // intracellular protein transport // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005643 // nuclear pore // not recorded /// 0005737 // cytoplasm // not recorded 0005049 // nuclear export signal receptor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation 1371517_at BF283627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283627 /DB_XREF=gi:11214697 /DB_XREF=EST448218 /CLONE=RGIEE76 /FEA=EST /CNT=29 /TID=Rn.3751.1 /TIER=Stack /STK=21 /UG=Rn.3751 /UG_TITLE=ESTs BF283627 growth factor receptor bound protein 10 Grb10 498416 NM_001109093 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from sequence or structural similarity /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0042326 // negative regulation of phosphorylation // not recorded /// 0046325 // negative regulation of glucose import // not recorded /// 0046627 // negative regulation of insulin receptor signaling pathway // not recorded /// 0048009 // insulin-like growth factor receptor signaling pathway // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0005070 // SH3/SH2 adaptor activity // not recorded /// 0005158 // insulin receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371518_at AI235948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235948 /DB_XREF=gi:4136139 /DB_XREF=EST232510 /CLONE=ROVCZ11 /FEA=EST /CNT=24 /TID=Rn.7991.1 /TIER=Stack /STK=21 /UG=Rn.7991 /UG_TITLE=ESTs, Highly similar to NIDO RAT NIDOGEN (R.norvegicus) AI235948 Nidogen 1 Nid1 25494 XM_001054079 /// XM_213954 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0008218 // bioluminescence // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // not recorded /// 0018298 // protein-chromophore linkage // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0032836 // glomerular basement membrane development // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005518 // collagen binding // not recorded /// 0043237 // laminin-1 binding // not recorded /// 0050840 // extracellular matrix binding // not recorded 1371519_at AA851258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851258 /DB_XREF=gi:2938798 /DB_XREF=EST194026 /CLONE=RPLAE49 /FEA=EST /CNT=27 /TID=Rn.37277.1 /TIER=Stack /STK=21 /UG=Rn.37277 /UG_TITLE=ESTs, Highly similar to S41115 probable flavoprotein-ubiquinone oxidoreductase (H.sapiens) AA851258 electron-transferring-flavoprotein dehydrogenase Etfdh 295143 NM_198742 0006810 // transport // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0006979 // response to oxidative stress // inferred from sequence or structural similarity /// 0022900 // electron transport chain // inferred from electronic annotation /// 0022900 // electron transport chain // not recorded /// 0033539 // fatty acid beta-oxidation using acyl-CoA dehydrogenase // inferred from electronic annotation /// 0033539 // fatty acid beta-oxidation using acyl-CoA dehydrogenase // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031305 // integral to mitochondrial inner membrane // inferred from electronic annotation /// 0031305 // integral to mitochondrial inner membrane // not recorded /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0031966 // mitochondrial membrane // not recorded /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0004174 // electron-transferring-flavoprotein dehydrogenase activity // inferred from electronic annotation /// 0004174 // electron-transferring-flavoprotein dehydrogenase activity // not recorded /// 0009055 // electron carrier activity // inferred from direct assay /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0009055 // electron carrier activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048038 // quinone binding // not recorded /// 0048038 // quinone binding // inferred from electronic annotation /// 0048039 // ubiquinone binding // inferred from electronic annotation /// 0048039 // ubiquinone binding // not recorded /// 0051536 // iron-sulfur cluster binding // inferred from direct assay /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // not recorded 1371520_at BI296732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296732 /DB_XREF=gi:14961453 /DB_XREF=UI-R-CV2-cgv-f-08-0-UI.s1 /CLONE=UI-R-CV2-cgv-f-08-0-UI /FEA=EST /CNT=25 /TID=Rn.40658.1 /TIER=Stack /STK=21 /UG=Rn.40658 /UG_TITLE=ESTs, Highly similar to T46314 hypothetical protein DKFZp434M1511.1 (H.sapiens) BI296732 S-phase cyclin A-associated protein in the ER Scaper 117521 XM_001070332 /// XM_343394 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1371521_at BI284797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284797 /DB_XREF=gi:14937797 /DB_XREF=UI-R-CX0s-ccs-c-11-0-UI.s1 /CLONE=UI-R-CX0s-ccs-c-11-0-UI /FEA=EST /CNT=24 /TID=Rn.11126.2 /TIER=Stack /STK=21 /UG=Rn.11126 /LL=117098 /UG_GENE=Pdhal /UG_TITLE=pyruvate dehydrogenase E1 alpha-like BI284797 SIN3 homolog B, transcription regulator (yeast) Sin3b 683381 NM_001115038 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1371522_at BI295010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295010 /DB_XREF=gi:14958026 /DB_XREF=UI-R-DK0-cee-g-02-0-UI.s1 /CLONE=UI-R-DK0-cee-g-02-0-UI /FEA=EST /CNT=23 /TID=Rn.6925.1 /TIER=Stack /STK=21 /UG=Rn.6925 /UG_TITLE=ESTs BI295010 bromo adjacent homology domain containing 1 Bahd1 362194 XM_001080776 /// XM_347035 0031507 // heterochromatin formation // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005677 // chromatin silencing complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0005515 // protein binding // not recorded 1371523_at AI104261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104261 /DB_XREF=gi:3708646 /DB_XREF=EST213550 /CLONE=RHEBZ47 /FEA=EST /CNT=23 /TID=Rn.1634.1 /TIER=Stack /STK=21 /UG=Rn.1634 /UG_TITLE=ESTs AI104261 copper metabolism (Murr1) domain containing 1 Commd1 289831 NM_001115022 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation 1371524_at AI009608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009608 /DB_XREF=gi:3223440 /DB_XREF=EST204059 /CLONE=RLUBG27 /FEA=EST /CNT=24 /TID=Rn.6708.1 /TIER=Stack /STK=21 /UG=Rn.6708 /UG_TITLE=ESTs AI009608 gene trap locus 3 Gtl3 307642 NM_001037978 1371525_at BI277550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277550 /DB_XREF=gi:14923532 /DB_XREF=UI-R-CY0-bxs-e-08-0-UI.s1 /CLONE=UI-R-CY0-bxs-e-08-0-UI /FEA=EST /CNT=23 /TID=Rn.6967.1 /TIER=Stack /STK=21 /UG=Rn.6967 /UG_TITLE=ESTs, Moderately similar to T31432 K-Cl cotransport protein 2, furosemide-sensitive - rat (R.norvegicus) BI277550 solute carrier family 12 (potassium/chloride transporters), member 7 Slc12a7 308069 XM_001060536 /// XM_001071999 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from electronic annotation /// 0006884 // cell volume homeostasis // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0015377 // cation:chloride symporter activity // inferred from electronic annotation /// 0015379 // potassium:chloride symporter activity // traceable author statement 1371526_at BG371468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371468 /DB_XREF=gi:13268005 /DB_XREF=UI-R-CW0-bvv-e-05-0-UI.s1 /CLONE=UI-R-CW0-bvv-e-05-0-UI /FEA=EST /CNT=23 /TID=Rn.11656.1 /TIER=Stack /STK=21 /UG=Rn.11656 /UG_TITLE=ESTs BG371468 ring finger protein 10 Rnf10 288710 NM_001011904 0006350 // transcription // inferred from electronic annotation /// 0010626 // negative regulation of Schwann cell proliferation // inferred from direct assay /// 0031643 // positive regulation of myelination // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1371527_at BI275741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275741 /DB_XREF=gi:14919952 /DB_XREF=UI-R-CX0-bxg-b-05-0-UI.s1 /CLONE=UI-R-CX0-bxg-b-05-0-UI /FEA=EST /CNT=22 /TID=Rn.19723.1 /TIER=Stack /STK=21 /UG=Rn.19723 /UG_TITLE=ESTs BI275741 epithelial membrane protein 1 Emp1 25314 NM_012843 0016049 // cell growth // inferred from electronic annotation 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 1371528_at BI274519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274519 /DB_XREF=gi:14885500 /DB_XREF=UI-R-CW0-bwj-g-09-0-UI.s1 /CLONE=UI-R-CW0-bwj-g-09-0-UI /FEA=EST /CNT=22 /TID=Rn.6898.1 /TIER=Stack /STK=21 /UG=Rn.6898 /UG_TITLE=ESTs, Highly similar to FK38_HUMAN 38 KDA FK-506 BINDING PROTEIN HOMOLOG (H.sapiens) BI274519 FK506 binding protein 8 Fkbp8 290652 NM_001037180 0001708 // cell fate specification // inferred from electronic annotation /// 0001708 // cell fate specification // not recorded /// 0006457 // protein folding // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // not recorded /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0021904 // dorsal/ventral neural tube patterning // inferred from electronic annotation /// 0021904 // dorsal/ventral neural tube patterning // not recorded /// 0021915 // neural tube development // inferred from electronic annotation /// 0021915 // neural tube development // not recorded /// 0030510 // regulation of BMP signaling pathway // not recorded /// 0030510 // regulation of BMP signaling pathway // inferred from electronic annotation /// 0030513 // positive regulation of BMP signaling pathway // inferred from electronic annotation /// 0030513 // positive regulation of BMP signaling pathway // not recorded /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded /// 0043010 // camera-type eye development // inferred from electronic annotation /// 0043010 // camera-type eye development // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005740 // mitochondrial envelope // not recorded /// 0005740 // mitochondrial envelope // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1371529_at BF289001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289001 /DB_XREF=gi:11220071 /DB_XREF=EST453592 /CLONE=RGIHA10 /FEA=EST /CNT=22 /TID=Rn.7572.1 /TIER=Stack /STK=21 /UG=Rn.7572 /UG_TITLE=ESTs, Weakly similar to PROTEASOME THETA CHAIN (R.norvegicus) BF289001 receptor (TNFRSF)-interacting serine-threonine kinase 1 Ripk1 306886 NM_001107350 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0010940 // positive regulation of necrotic cell death // not recorded /// 0034612 // response to tumor necrosis factor // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0046777 // protein autophosphorylation // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051291 // protein heterooligomerization // inferred from physical interaction /// 0060555 // induction of necroptosis by extracellular signals // not recorded /// 0070926 // regulation of ATP:ADP antiporter activity // not recorded 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded /// 0031264 // death-inducing signaling complex // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0043235 // receptor complex // not recorded /// 0045121 // membrane raft // inferred from direct assay 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005123 // death receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0070513 // death domain binding // not recorded 1371530_at BF281337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281337 /DB_XREF=gi:11212407 /DB_XREF=EST445928 /CLONE=RGIAD41 /FEA=EST /CNT=26 /TID=Rn.11083.1 /TIER=Stack /STK=21 /UG=Rn.11083 /UG_TITLE=ESTs, Highly similar to K2C8 RAT KERATIN, TYPE II CYTOSKELETAL 8 (R.norvegicus) BF281337 keratin 8 Krt8 25626 NM_199370 0006915 // apoptosis // not recorded /// 0033209 // tumor necrosis factor-mediated signaling pathway // not recorded /// 0045214 // sarcomere organization // inferred from direct assay /// 0051599 // response to hydrostatic pressure // inferred from direct assay /// 0051707 // response to other organism // not recorded /// 0060706 // cell differentiation involved in embryonic placenta development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005882 // intermediate filament // not recorded /// 0005882 // intermediate filament // inferred from electronic annotation /// 0016010 // dystrophin-associated glycoprotein complex // inferred from direct assay /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0030018 // Z disc // inferred from direct assay /// 0030018 // Z disc // not recorded /// 0042383 // sarcolemma // inferred from direct assay /// 0042383 // sarcolemma // not recorded /// 0043034 // costamere // inferred from direct assay /// 0045095 // keratin filament // inferred from direct assay /// 0045095 // keratin filament // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1371531_at AI012962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012962 /DB_XREF=gi:3226794 /DB_XREF=EST207413 /CLONE=RSPBA38 /FEA=EST /CNT=22 /TID=Rn.12183.1 /TIER=Stack /STK=21 /UG=Rn.12183 /UG_TITLE=ESTs, Weakly similar to putative prenylated protein (H.sapiens) AI012962 similar to mammalian retrotransposon derived 8b LOC678880 678880 XM_001053139 1371532_at BF404505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404505 /DB_XREF=gi:11392520 /DB_XREF=UI-R-CA1-big-g-02-0-UI.s1 /CLONE=UI-R-CA1-big-g-02-0-UI /FEA=EST /CNT=21 /TID=Rn.63522.1 /TIER=Stack /STK=21 /UG=Rn.63522 /UG_TITLE=ESTs BF404505 1371533_at BI282273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282273 /DB_XREF=gi:14932877 /DB_XREF=UI-R-CU0s-cby-f-05-0-UI.s1 /CLONE=UI-R-CU0s-cby-f-05-0-UI /FEA=EST /CNT=21 /TID=Rn.3642.1 /TIER=Stack /STK=21 /UG=Rn.3642 /UG_TITLE=ESTs, Moderately similar to WS3_HUMAN WS-3 PROTEIN (H.sapiens) BI282273 dynactin 6 Dctn6 290798 NM_001106085 0005869 // dynactin complex // not recorded 0016740 // transferase activity // inferred from electronic annotation /// 0045502 // dynein binding // not recorded 1371534_at AI407908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407908 /DB_XREF=gi:4251412 /DB_XREF=EST236198 /CLONE=ROVEE87 /FEA=EST /CNT=21 /TID=Rn.2959.1 /TIER=Stack /STK=21 /UG=Rn.2959 /UG_TITLE=ESTs, Highly similar to vesicle-associated calmodulin-binding protein (Rattus norvegicus) (R.norvegicus) AI407908 solute carrier family 25 (mitochondrial carrier, glutamate), member 22 Slc25a22 309111 NM_001014027 0006810 // transport // inferred from electronic annotation /// 0015813 // L-glutamate transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005313 // L-glutamate transmembrane transporter activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371535_at AI411161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411161 /DB_XREF=gi:4254665 /DB_XREF=EST239455 /CLONE=RKIET75 /FEA=EST /CNT=21 /TID=Rn.9265.1 /TIER=Stack /STK=21 /UG=Rn.9265 /UG_TITLE=ESTs AI411161 phosphomannomutase 2 Pmm2 302915 NM_001106973 0008152 // metabolic process // inferred from electronic annotation /// 0019307 // mannose biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004615 // phosphomannomutase activity // inferred from electronic annotation 1371536_at AI233208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233208 /DB_XREF=gi:3817088 /DB_XREF=EST229896 /CLONE=RKIDC22 /FEA=EST /CNT=33 /TID=Rn.2653.1 /TIER=Stack /STK=20 /UG=Rn.2653 /UG_TITLE=ESTs, Weakly similar to RNA-binding protein PIPPin (R.norvegicus) AI233208 calcium regulated heat stable protein 1 Carhsp1 260416 NM_152790 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // non-traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement 1371537_at AI179422 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179422 /DB_XREF=gi:3730060 /DB_XREF=EST223130 /CLONE=RSPCH13 /FEA=EST /CNT=28 /TID=Rn.2594.1 /TIER=Stack /STK=20 /UG=Rn.2594 /UG_TITLE=ESTs AI179422 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5 B4galt5 362275 NM_001108608 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1371538_at BF407786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407786 /DB_XREF=gi:11395761 /DB_XREF=UI-R-BJ2-brd-e-06-0-UI.s1 /CLONE=UI-R-BJ2-brd-e-06-0-UI /FEA=EST /CNT=26 /TID=Rn.41058.1 /TIER=Stack /STK=20 /UG=Rn.41058 /UG_TITLE=ESTs BF407786 BR serine/threonine kinase 1 Brsk1 499073 NM_001127337 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0009411 // response to UV // inferred from electronic annotation /// 0009411 // response to UV // not recorded /// 0010212 // response to ionizing radiation // not recorded /// 0030010 // establishment of cell polarity // inferred from electronic annotation /// 0030010 // establishment of cell polarity // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0031572 // G2/M transition DNA damage checkpoint // inferred from electronic annotation /// 0031572 // G2/M transition DNA damage checkpoint // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030054 // cell junction // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1371539_at AW921151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921151 /DB_XREF=gi:8086972 /DB_XREF=EST352455 /CLONE=RGIHP03 /FEA=EST /CNT=28 /TID=Rn.4216.1 /TIER=Stack /STK=20 /UG=Rn.4216 /UG_TITLE=ESTs, Weakly similar to NHPX RAT NHP2RS6 FAMILY PROTEIN YEL026W HOMOLOG (R.norvegicus) AW921151 NHP2 ribonucleoprotein homolog (yeast) Nhp2 287273 NM_001105779 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1371540_at AI102711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102711 /DB_XREF=gi:3707410 /DB_XREF=EST212000 /CLONE=REMBR53 /FEA=EST /CNT=26 /TID=Rn.4230.1 /TIER=Stack /STK=20 /UG=Rn.4230 /UG_TITLE=ESTs, Moderately similar to RL3 RAT 60S RIBOSOMAL PROTEIN L3 (R.norvegicus) AI102711 keratinocyte associated protein 2 Krtcap2 295243 NM_001106444 0008250 // oligosaccharyltransferase complex // inferred from electronic annotation /// 0008250 // oligosaccharyltransferase complex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1371541_at AI177055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177055 /DB_XREF=gi:3727693 /DB_XREF=EST220662 /CLONE=ROVCA27 /FEA=EST /CNT=25 /TID=Rn.1365.1 /TIER=Stack /STK=20 /UG=Rn.1365 /UG_TITLE=ESTs AI177055 myosin light chain kinase Mylk 288057 NM_001105874 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006936 // muscle contraction // not recorded 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1371542_at BI284599 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284599 /DB_XREF=gi:14937413 /DB_XREF=UI-R-DE0-cac-a-03-0-UI.s1 /CLONE=UI-R-DE0-cac-a-03-0-UI /FEA=EST /CNT=32 /TID=Rn.6673.1 /TIER=Stack /STK=20 /UG=Rn.6673 /UG_TITLE=ESTs, Highly similar to 0812252A tubulin alpha (R.norvegicus) BI284599 tubulin, alpha 4A Tuba4a 316531 NM_001007004 0007017 // microtubule-based process // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0005829 // cytosol // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1371543_at AI170047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170047 /DB_XREF=gi:3710087 /DB_XREF=EST215963 /CLONE=RLUBY06 /FEA=EST /CNT=29 /TID=Rn.6511.1 /TIER=Stack /STK=20 /UG=Rn.6511 /UG_TITLE=ESTs, Weakly similar to MTR1_MOUSE MYOTUBULARIN-RELATED PROTEIN 1 (M.musculus) AI170047 myotubularin related protein 2 Mtmr2 315422 NM_001108123 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0051262 // protein tetramerization // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005774 // vacuolar membrane // not recorded 0004437 // inositol or phosphatidylinositol phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1371544_at BE109666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109666 /DB_XREF=gi:8501771 /DB_XREF=UI-R-BJ1-avq-g-05-0-UI.s1 /CLONE=UI-R-BJ1-avq-g-05-0-UI /FEA=EST /CNT=25 /TID=Rn.257.1 /TIER=Stack /STK=20 /UG=Rn.257 /UG_TITLE=ESTs, Highly similar to ERH_HUMAN ENHANCER OF RUDIMENTARY HOMOLOG (M.musculus) BE109666 enhancer of rudimentary homolog (Drosophila) Erh 681415 NM_001109442 0007049 // cell cycle // inferred from electronic annotation 0005515 // protein binding // not recorded 1371545_at AI010414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010414 /DB_XREF=gi:3224246 /DB_XREF=EST204865 /CLONE=RLUBZ19 /FEA=EST /CNT=25 /TID=Rn.1878.1 /TIER=Stack /STK=20 /UG=Rn.1878 /UG_TITLE=ESTs AI010414 platelet/endothelial cell adhesion molecule 1 Pecam1 29583 NM_031591 0002687 // positive regulation of leukocyte migration // inferred from mutant phenotype /// 0006909 // phagocytosis // not recorded /// 0006928 // cellular component movement // inferred from direct assay /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // not recorded /// 0030334 // regulation of cell migration // not recorded /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042060 // wound healing // not recorded /// 0050904 // diapedesis // not recorded 0005615 // extracellular space // not recorded /// 0005625 // soluble fraction // not recorded /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030485 // smooth muscle contractile fiber // not recorded /// 0031092 // platelet alpha granule membrane // not recorded /// 0045121 // membrane raft // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1371546_at BI284988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284988 /DB_XREF=gi:14938184 /DB_XREF=UI-R-DB0-byu-h-06-0-UI.s1 /CLONE=UI-R-DB0-byu-h-06-0-UI /FEA=EST /CNT=26 /TID=Rn.3320.1 /TIER=Stack /STK=20 /UG=Rn.3320 /UG_TITLE=ESTs, Weakly similar to V-1 protein (Rattus norvegicus) (R.norvegicus) BI284988 similar to TR4 orphan receptor associated protein TRA16 LOC361128 361128 NM_001047104 0007155 // cell adhesion // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1371547_at BI282112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282112 /DB_XREF=gi:14932533 /DB_XREF=UI-R-CU0s-cbw-f-10-0-UI.s1 /CLONE=UI-R-CU0s-cbw-f-10-0-UI /FEA=EST /CNT=26 /TID=Rn.1223.1 /TIER=Stack /STK=20 /UG=Rn.1223 /UG_TITLE=ESTs, Highly similar to C10 MOUSE PUTATIVE C10 PROTEIN (M.musculus) BI282112 C10 protein LOC100362005 100362005 NM_001198725 /// XM_002726446 /// XM_002729427 1371548_at BI289416 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289416 /DB_XREF=gi:14946965 /DB_XREF=UI-R-DK0-cfg-g-02-0-UI.s1 /CLONE=UI-R-DK0-cfg-g-02-0-UI /FEA=EST /CNT=24 /TID=Rn.3814.1 /TIER=Stack /STK=20 /UG=Rn.3814 /UG_TITLE=ESTs, Highly similar to RT25_MOUSE Mitochondrial 28S ribosomal protein S25 (MRP-S25) (M.musculus) BI289416 mitochondrial ribosomal protein S25 Mrps25 297459 NM_001025408 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371549_at AI228630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228630 /DB_XREF=gi:3812517 /DB_XREF=EST225325 /CLONE=RBRCX40 /FEA=EST /CNT=24 /TID=Rn.16542.1 /TIER=Stack /STK=20 /UG=Rn.16542 /UG_TITLE=ESTs, Weakly similar to T20360 hypothetical protein D2030.9b - Caenorhabditis elegans (C.elegans) AI228630 DDB1 and CUL4 associated factor 11 Dcaf11 305895 NM_001009686 0080008 // CUL4 RING ubiquitin ligase complex // not recorded /// 0080008 // CUL4 RING ubiquitin ligase complex // inferred from sequence or structural similarity /// 0080008 // CUL4 RING ubiquitin ligase complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371550_at AW533431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533431 /DB_XREF=gi:7175845 /DB_XREF=UI-R-BU0-anb-h-01-0-UI.s1 /CLONE=UI-R-BU0-anb-h-01-0-UI /FEA=EST /CNT=23 /TID=Rn.2973.1 /TIER=Stack /STK=20 /UG=Rn.2973 /UG_TITLE=ESTs AW533431 TSC22 domain family, member 4 Tsc22d4 684980 NM_001044284 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1371551_at BM383323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383323 /DB_XREF=gi:18183376 /DB_XREF=UI-R-CV2-cig-c-04-0-UI.s2 /CLONE=UI-R-CV2-cig-c-04-0-UI /FEA=EST /CNT=22 /TID=Rn.3219.1 /TIER=Stack /STK=20 /UG=Rn.3219 /UG_TITLE=ESTs BM383323 Tnf receptor associated factor 4 Traf4 303285 NM_001107017 0007165 // signal transduction // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030323 // respiratory tube development // inferred from electronic annotation /// 0030323 // respiratory tube development // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0046330 // positive regulation of JNK cascade // not recorded /// 0090073 // positive regulation of protein homodimerization activity // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050699 // WW domain binding // not recorded 1371552_at BF400684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400684 /DB_XREF=gi:11388659 /DB_XREF=UI-R-CA0-bhe-c-06-0-UI.s1 /CLONE=UI-R-CA0-bhe-c-06-0-UI /FEA=EST /CNT=22 /TID=Rn.41520.1 /TIER=Stack /STK=20 /UG=Rn.41520 /UG_TITLE=ESTs BF400684 1371553_at BF288120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288120 /DB_XREF=gi:11219190 /DB_XREF=EST452711 /CLONE=RGIGP76 /FEA=EST /CNT=22 /TID=Rn.7601.1 /TIER=Stack /STK=20 /UG=Rn.7601 /UG_TITLE=ESTs, Weakly similar to S72254 ribosomal protein L36, mitochondrial - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BF288120 mitochondrial ribosomal protein L36 Mrpl36 364656 NM_001108879 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005762 // mitochondrial large ribosomal subunit // inferred from electronic annotation /// 0005762 // mitochondrial large ribosomal subunit // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1371554_at AA799471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799471 /DB_XREF=gi:2862426 /DB_XREF=EST188968 /CLONE=RHEAB42 /FEA=EST /CNT=22 /TID=Rn.4012.1 /TIER=Stack /STK=20 /UG=Rn.4012 /UG_TITLE=ESTs, Highly similar to TELT MOUSE TELETHONIN (M.musculus) AA799471 1371555_at AI599411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599411 /DB_XREF=gi:4608459 /DB_XREF=EST251114 /CLONE=REMEO76 /FEA=EST /CNT=23 /TID=Rn.2280.1 /TIER=Stack /STK=20 /UG=Rn.2280 /UG_TITLE=ESTs, Highly similar to SNXC_MOUSE SORTING NEXIN 12 (SDP8 PROTEIN) (M.musculus) AI599411 sorting nexin 12 Snx12 363478 NM_001108817 0007154 // cell communication // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1371556_at BE108748 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108748 /DB_XREF=gi:8500853 /DB_XREF=UI-R-BS1-ayy-a-06-0-UI.s1 /CLONE=UI-R-BS1-ayy-a-06-0-UI /FEA=EST /CNT=23 /TID=Rn.12810.1 /TIER=Stack /STK=20 /UG=Rn.12810 /UG_TITLE=ESTs BE108748 protein inhibitor of activated STAT, 4 Pias4 362827 NM_001100757 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016925 // protein sumoylation // not recorded /// 0016925 // protein sumoylation // inferred from electronic annotation /// 0033235 // positive regulation of protein sumoylation // not recorded /// 0033235 // positive regulation of protein sumoylation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0016363 // nuclear matrix // not recorded /// 0016363 // nuclear matrix // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0019789 // SUMO ligase activity // not recorded /// 0019789 // SUMO ligase activity // inferred from electronic annotation 1371557_at BI275281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275281 /DB_XREF=gi:14886979 /DB_XREF=UI-R-CX0-bwr-f-08-0-UI.s1 /CLONE=UI-R-CX0-bwr-f-08-0-UI /FEA=EST /CNT=22 /TID=Rn.13958.1 /TIER=Stack /STK=20 /UG=Rn.13958 /UG_TITLE=ESTs, Weakly similar to T28H10.2.p (Caenorhabditis elegans) (C.elegans) BI275281 THAP domain containing 4 Thap4 363291 NM_001005564 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371558_at BI282284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282284 /DB_XREF=gi:14932900 /DB_XREF=UI-R-CU0s-cby-g-05-0-UI.s1 /CLONE=UI-R-CU0s-cby-g-05-0-UI /FEA=EST /CNT=21 /TID=Rn.25973.1 /TIER=Stack /STK=20 /UG=Rn.25973 /UG_TITLE=ESTs, Highly similar to T17230 hypothetical protein DKFZp434E066.1 (H.sapiens) BI282284 nischarin Nisch 306255 XM_001057307 /// XM_001058707 /// XM_001058760 /// XM_240330 0006006 // glucose metabolic process // inferred from mutant phenotype /// 0006915 // apoptosis // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0008217 // regulation of blood pressure // inferred from mutant phenotype /// 0016601 // Rac protein signal transduction // not recorded /// 0030036 // actin cytoskeleton organization // not recorded /// 0030336 // negative regulation of cell migration // not recorded /// 0032228 // regulation of synaptic transmission, GABAergic // inferred from mutant phenotype /// 0048243 // norepinephrine secretion // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008227 // G-protein coupled amine receptor activity // inferred from direct assay /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1371559_at AI103384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103384 /DB_XREF=gi:3707934 /DB_XREF=EST212673 /CLONE=REMCB34 /FEA=EST /CNT=21 /TID=Rn.760.1 /TIER=Stack /STK=20 /UG=Rn.760 /UG_TITLE=ESTs AI103384 NAD kinase Nadk 100125370 NM_001109678 0008152 // metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003951 // NAD+ kinase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371560_at AA893384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893384 /DB_XREF=gi:3020263 /DB_XREF=EST197187 /CLONE=RKIBF74 /FEA=EST /CNT=21 /TID=Rn.1499.1 /TIER=Stack /STK=20 /UG=Rn.1499 /UG_TITLE=ESTs, Moderately similar to IRF3 MOUSE INTERFERON REGULATORY FACTOR 3 (M.musculus) AA893384 interferon regulatory factor 3 Irf3 292892 NM_001006969 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded /// 0009617 // response to bacterium // inferred from electronic annotation /// 0009617 // response to bacterium // not recorded /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0031663 // lipopolysaccharide-mediated signaling pathway // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0043330 // response to exogenous dsRNA // inferred from electronic annotation /// 0043330 // response to exogenous dsRNA // not recorded /// 0045351 // type I interferon biosynthetic process // inferred from electronic annotation /// 0045351 // type I interferon biosynthetic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0010008 // endosome membrane // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1371561_at AA849522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849522 /DB_XREF=gi:2937062 /DB_XREF=EST192289 /CLONE=RMUAF83 /FEA=EST /CNT=21 /TID=Rn.1106.1 /TIER=Stack /STK=20 /UG=Rn.1106 /UG_TITLE=ESTs, Weakly similar to G6PT RAT GLUCOSE-6-PHOSPHATASE (R.norvegicus) AA849522 glucose 6 phosphatase, catalytic, 3 G6pc3 303565 NM_176077 0006094 // gluconeogenesis // inferred from direct assay /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006796 // phosphate metabolic process // inferred from direct assay /// 0015760 // glucose-6-phosphate transport // inferred from electronic annotation /// 0015760 // glucose-6-phosphate transport // not recorded /// 0016311 // dephosphorylation // not recorded /// 0051156 // glucose 6-phosphate metabolic process // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004346 // glucose-6-phosphatase activity // inferred from direct assay /// 0004346 // glucose-6-phosphatase activity // not recorded /// 0004346 // glucose-6-phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1371562_at BI296640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296640 /DB_XREF=gi:14961266 /DB_XREF=UI-R-CV2-cgt-f-01-0-UI.s1 /CLONE=UI-R-CV2-cgt-f-01-0-UI /FEA=EST /CNT=22 /TID=Rn.25139.1 /TIER=Stack /STK=20 /UG=Rn.25139 /UG_TITLE=ESTs BI296640 epsin 2 Epn2 60443 NM_001033914 /// NM_021852 0006897 // endocytosis // inferred from electronic annotation /// 0030100 // regulation of endocytosis // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0030128 // clathrin coat of endocytic vesicle // inferred from direct assay 0008289 // lipid binding // inferred from electronic annotation 1371563_at BE109154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109154 /DB_XREF=gi:8501259 /DB_XREF=UI-R-BS1-azb-e-09-0-UI.s1 /CLONE=UI-R-BS1-azb-e-09-0-UI /FEA=EST /CNT=22 /TID=Rn.40170.1 /TIER=Stack /STK=20 /UG=Rn.40170 /UG_TITLE=ESTs, Highly similar to T50630 hypothetical protein DKFZp762N0610.1 (H.sapiens) BE109154 regulator of chromosome condensation 2 Rcc2 298594 XM_001072061 /// XM_216557 1371564_at AI169159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169159 /DB_XREF=gi:3705467 /DB_XREF=EST214993 /CLONE=RKIBO27 /FEA=EST /CNT=22 /TID=Rn.37263.1 /TIER=Stack /STK=20 /UG=Rn.37263 /UG_TITLE=ESTs, Moderately similar to VATE MOUSE VACUOLAR ATP SYNTHASE SUBUNIT E (M.musculus) AI169159 ATPase, H+ transporting, lysosomal V1 subunit E1 Atp6v1e1 297566 NM_198745 0006200 // ATP catabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015991 // ATP hydrolysis coupled proton transport // not recorded /// 0015992 // proton transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from sequence or structural similarity /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from sequence or structural similarity /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0033178 // proton-transporting two-sector ATPase complex, catalytic domain // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008553 // hydrogen-exporting ATPase activity, phosphorylative mechanism // inferred from electronic annotation /// 0008553 // hydrogen-exporting ATPase activity, phosphorylative mechanism // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 1371565_at BM390478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390478 /DB_XREF=gi:18190531 /DB_XREF=UI-R-CN1-cjq-j-12-0-UI.s1 /CLONE=UI-R-CN1-cjq-j-12-0-UI /FEA=EST /CNT=21 /TID=Rn.6630.1 /TIER=Stack /STK=20 /UG=Rn.6630 /UG_TITLE=ESTs, Weakly similar to KT12_YEAST KTI12 PROTEIN (S.cerevisiae) BM390478 KTI12 homolog, chromatin associated (S. cerevisiae) Kti12 685656 NM_001044288 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1371566_at BI296437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296437 /DB_XREF=gi:14960860 /DB_XREF=UI-R-CV2-cgr-b-10-0-UI.s1 /CLONE=UI-R-CV2-cgr-b-10-0-UI /FEA=EST /CNT=21 /TID=Rn.15764.1 /TIER=Stack /STK=20 /UG=Rn.15764 /UG_TITLE=ESTs, Weakly similar to T08680 hypothetical protein DKFZp564P0622.1 (H.sapiens) BI296437 F-box and leucine-rich repeat protein 22 Fbxl22 363083 NM_001108769 1371567_at AI411279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411279 /DB_XREF=gi:4254783 /DB_XREF=EST239573 /CLONE=RKIEO55 /FEA=EST /CNT=21 /TID=Rn.7330.1 /TIER=Stack /STK=20 /UG=Rn.7330 /UG_TITLE=ESTs, Highly similar to B54676 antiquitin - rat (R.norvegicus) AI411279 aldehyde dehydrogenase 7 family, member A1 Aldh7a1 291450 XM_001059375 /// XM_214535 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0004029 // aldehyde dehydrogenase (NAD) activity // inferred from electronic annotation /// 0004043 // L-aminoadipate-semialdehyde dehydrogenase activity // inferred from electronic annotation /// 0008802 // betaine-aldehyde dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1371568_at AI145381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145381 /DB_XREF=gi:3667180 /DB_XREF=UI-R-BT0-qe-d-04-0-UI.s1 /CLONE=UI-R-BT0-qe-d-04-0-UI /FEA=EST /CNT=21 /TID=Rn.20352.2 /TIER=Stack /STK=20 /UG=Rn.20352 /UG_TITLE=Rattus norvegicus synuclein, beta (Sncb), mRNA AI145381 synuclein, beta Sncb 113893 NM_080777 0042417 // dopamine metabolic process // inferred from electronic annotation /// 0042417 // dopamine metabolic process // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0019717 // synaptosome // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0043195 // terminal button // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay 0005509 // calcium ion binding // not recorded 1371569_at BI294976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294976 /DB_XREF=gi:14957958 /DB_XREF=UI-R-DK0-cee-c-12-0-UI.s1 /CLONE=UI-R-DK0-cee-c-12-0-UI /FEA=EST /CNT=20 /TID=Rn.22097.1 /TIER=Stack /STK=20 /UG=Rn.22097 /UG_TITLE=ESTs BI294976 1371570_at AI406266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406266 /DB_XREF=gi:4249770 /DB_XREF=EST234552 /CLONE=RBRDL89 /FEA=EST /CNT=20 /TID=Rn.9529.1 /TIER=Stack /STK=20 /UG=Rn.9529 /UG_TITLE=ESTs, Moderately similar to T31067 BIR repeat containing ubiquitin-conjugating enzyme BRUCE - mouse (M.musculus) AI406266 1371571_at BG671677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671677 /DB_XREF=gi:13893776 /DB_XREF=DRNBWD09 /CLONE=DRNBWD09 /FEA=EST /CNT=81 /TID=Rn.2104.1 /TIER=Stack /STK=19 /UG=Rn.2104 /UG_TITLE=ESTs, Moderately similar to A4 RAT ALZHEIMERS DISEASE AMYLOID A4 PROTEIN HOMOLOG PRECURSOR (R.norvegicus) BG671677 amyloid beta (A4) precursor protein App 54226 NM_019288 0000085 // G2 phase of mitotic cell cycle // not recorded /// 0000085 // G2 phase of mitotic cell cycle // inferred from sequence or structural similarity /// 0000085 // G2 phase of mitotic cell cycle // inferred from electronic annotation /// 0001967 // suckling behavior // inferred from electronic annotation /// 0001967 // suckling behavior // not recorded /// 0006378 // mRNA polyadenylation // not recorded /// 0006378 // mRNA polyadenylation // inferred from sequence or structural similarity /// 0006378 // mRNA polyadenylation // inferred from electronic annotation /// 0006417 // regulation of translation // not recorded /// 0006417 // regulation of translation // inferred from sequence or structural similarity /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006878 // cellular copper ion homeostasis // not recorded /// 0006878 // cellular copper ion homeostasis // inferred from sequence or structural similarity /// 0006878 // cellular copper ion homeostasis // inferred from electronic annotation /// 0006897 // endocytosis // not recorded /// 0006897 // endocytosis // inferred from sequence or structural similarity /// 0006897 // endocytosis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from direct assay /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007176 // regulation of epidermal growth factor receptor activity // not recorded /// 0007176 // regulation of epidermal growth factor receptor activity // inferred from sequence or structural similarity /// 0007176 // regulation of epidermal growth factor receptor activity // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from sequence or structural similarity /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007617 // mating behavior // not recorded /// 0007617 // mating behavior // inferred from sequence or structural similarity /// 0007617 // mating behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0007626 // locomotory behavior // inferred from sequence or structural similarity /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0008088 // axon cargo transport // not recorded /// 0008088 // axon cargo transport // inferred from sequence or structural similarity /// 0008088 // axon cargo transport // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0008344 // adult locomotory behavior // inferred from sequence or structural similarity /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0008542 // visual learning // inferred from sequence or structural similarity /// 0008542 // visual learning // inferred from electronic annotation /// 0016199 // axon midline choice point recognition // not recorded /// 0016199 // axon midline choice point recognition // inferred from sequence or structural similarity /// 0016199 // axon midline choice point recognition // inferred from electronic annotation /// 0016322 // neuron remodeling // not recorded /// 0016322 // neuron remodeling // inferred from sequence or structural similarity /// 0016322 // neuron remodeling // inferred from electronic annotation /// 0016358 // dendrite development // not recorded /// 0016358 // dendrite development // inferred from sequence or structural similarity /// 0016358 // dendrite development // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030198 // extracellular matrix organization // inferred from sequence or structural similarity /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0031175 // neuron projection development // not recorded /// 0031175 // neuron projection development // inferred from sequence or structural similarity /// 0031175 // neuron projection development // inferred from electronic annotation /// 0035235 // ionotropic glutamate receptor signaling pathway // not recorded /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from sequence or structural similarity /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from sequence or structural similarity /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // not recorded /// 0045931 // positive regulation of mitotic cell cycle // inferred from sequence or structural similarity /// 0045931 // positive regulation of mitotic cell cycle // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048669 // collateral sprouting in absence of injury // not recorded /// 0048669 // collateral sprouting in absence of injury // inferred from sequence or structural similarity /// 0048669 // collateral sprouting in absence of injury // inferred from electronic annotation /// 0050803 // regulation of synapse structure and activity // not recorded /// 0050803 // regulation of synapse structure and activity // inferred from sequence or structural similarity /// 0050803 // regulation of synapse structure and activity // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0051124 // synaptic growth at neuromuscular junction // inferred from electronic annotation /// 0051124 // synaptic growth at neuromuscular junction // not recorded /// 0051402 // neuron apoptosis // inferred from electronic annotation /// 0051402 // neuron apoptosis // not recorded /// 0051563 // smooth endoplasmic reticulum calcium ion homeostasis // inferred from electronic annotation /// 0051563 // smooth endoplasmic reticulum calcium ion homeostasis // not recorded 0005576 // extracellular region // not recorded /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from sequence or structural similarity /// 0030424 // axon // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0031594 // neuromuscular junction // not recorded /// 0035253 // ciliary rootlet // inferred from electronic annotation /// 0035253 // ciliary rootlet // not recorded /// 0043005 // neuron projection // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043197 // dendritic spine // not recorded /// 0043198 // dendritic shaft // inferred from electronic annotation /// 0043198 // dendritic shaft // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded /// 0045202 // synapse // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0051233 // spindle midzone // inferred from electronic annotation /// 0051233 // spindle midzone // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // not recorded /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0016504 // peptidase activator activity // inferred from direct assay /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0033130 // acetylcholine receptor binding // inferred from electronic annotation /// 0033130 // acetylcholine receptor binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1371572_at BM986220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM986220 /DB_XREF=gi:19705609 /DB_XREF=EST531674 /CLONE=RGIAA35 /FEA=EST /CNT=81 /TID=Rn.2104.1 /TIER=Stack /STK=12 /UG=Rn.2104 /UG_TITLE=ESTs, Moderately similar to A4 RAT ALZHEIMERS DISEASE AMYLOID A4 PROTEIN HOMOLOG PRECURSOR (R.norvegicus) BM986220 amyloid beta (A4) precursor protein App 54226 NM_019288 0000085 // G2 phase of mitotic cell cycle // not recorded /// 0000085 // G2 phase of mitotic cell cycle // inferred from sequence or structural similarity /// 0000085 // G2 phase of mitotic cell cycle // inferred from electronic annotation /// 0001967 // suckling behavior // inferred from electronic annotation /// 0001967 // suckling behavior // not recorded /// 0006378 // mRNA polyadenylation // not recorded /// 0006378 // mRNA polyadenylation // inferred from sequence or structural similarity /// 0006378 // mRNA polyadenylation // inferred from electronic annotation /// 0006417 // regulation of translation // not recorded /// 0006417 // regulation of translation // inferred from sequence or structural similarity /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006878 // cellular copper ion homeostasis // not recorded /// 0006878 // cellular copper ion homeostasis // inferred from sequence or structural similarity /// 0006878 // cellular copper ion homeostasis // inferred from electronic annotation /// 0006897 // endocytosis // not recorded /// 0006897 // endocytosis // inferred from sequence or structural similarity /// 0006897 // endocytosis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from direct assay /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007176 // regulation of epidermal growth factor receptor activity // not recorded /// 0007176 // regulation of epidermal growth factor receptor activity // inferred from sequence or structural similarity /// 0007176 // regulation of epidermal growth factor receptor activity // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from sequence or structural similarity /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007617 // mating behavior // not recorded /// 0007617 // mating behavior // inferred from sequence or structural similarity /// 0007617 // mating behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0007626 // locomotory behavior // inferred from sequence or structural similarity /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0008088 // axon cargo transport // not recorded /// 0008088 // axon cargo transport // inferred from sequence or structural similarity /// 0008088 // axon cargo transport // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0008344 // adult locomotory behavior // inferred from sequence or structural similarity /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0008542 // visual learning // inferred from sequence or structural similarity /// 0008542 // visual learning // inferred from electronic annotation /// 0016199 // axon midline choice point recognition // not recorded /// 0016199 // axon midline choice point recognition // inferred from sequence or structural similarity /// 0016199 // axon midline choice point recognition // inferred from electronic annotation /// 0016322 // neuron remodeling // not recorded /// 0016322 // neuron remodeling // inferred from sequence or structural similarity /// 0016322 // neuron remodeling // inferred from electronic annotation /// 0016358 // dendrite development // not recorded /// 0016358 // dendrite development // inferred from sequence or structural similarity /// 0016358 // dendrite development // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030198 // extracellular matrix organization // inferred from sequence or structural similarity /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0031175 // neuron projection development // not recorded /// 0031175 // neuron projection development // inferred from sequence or structural similarity /// 0031175 // neuron projection development // inferred from electronic annotation /// 0035235 // ionotropic glutamate receptor signaling pathway // not recorded /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from sequence or structural similarity /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from sequence or structural similarity /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // not recorded /// 0045931 // positive regulation of mitotic cell cycle // inferred from sequence or structural similarity /// 0045931 // positive regulation of mitotic cell cycle // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048669 // collateral sprouting in absence of injury // not recorded /// 0048669 // collateral sprouting in absence of injury // inferred from sequence or structural similarity /// 0048669 // collateral sprouting in absence of injury // inferred from electronic annotation /// 0050803 // regulation of synapse structure and activity // not recorded /// 0050803 // regulation of synapse structure and activity // inferred from sequence or structural similarity /// 0050803 // regulation of synapse structure and activity // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0051124 // synaptic growth at neuromuscular junction // inferred from electronic annotation /// 0051124 // synaptic growth at neuromuscular junction // not recorded /// 0051402 // neuron apoptosis // inferred from electronic annotation /// 0051402 // neuron apoptosis // not recorded /// 0051563 // smooth endoplasmic reticulum calcium ion homeostasis // inferred from electronic annotation /// 0051563 // smooth endoplasmic reticulum calcium ion homeostasis // not recorded 0005576 // extracellular region // not recorded /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from sequence or structural similarity /// 0030424 // axon // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0031594 // neuromuscular junction // not recorded /// 0035253 // ciliary rootlet // inferred from electronic annotation /// 0035253 // ciliary rootlet // not recorded /// 0043005 // neuron projection // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043197 // dendritic spine // not recorded /// 0043198 // dendritic shaft // inferred from electronic annotation /// 0043198 // dendritic shaft // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded /// 0045202 // synapse // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0051233 // spindle midzone // inferred from electronic annotation /// 0051233 // spindle midzone // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // not recorded /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0016504 // peptidase activator activity // inferred from direct assay /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0033130 // acetylcholine receptor binding // inferred from electronic annotation /// 0033130 // acetylcholine receptor binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1371573_at AW142090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142090 /DB_XREF=gi:6161962 /DB_XREF=EST292309 /CLONE=RGIAG27 /FEA=EST /CNT=32 /TID=Rn.28.2 /TIER=Stack /STK=19 /UG=Rn.28 /LL=56611 /UG_GENE=Anxa2 /UG_TITLE=calpactin I heavy chain AW142090 ribosomal protein L36a Rpl36a 292964 NM_001128065 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1371574_at BF284759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284759 /DB_XREF=gi:11215829 /DB_XREF=EST449350 /CLONE=RGIEV94 /FEA=EST /CNT=33 /TID=Rn.1421.2 /TIER=Stack /STK=19 /UG=Rn.1421 /UG_TITLE=ESTs, Highly similar to S22655 translation elongation factor eEF-1 gamma chain (H.sapiens) BF284759 growth hormone inducible transmembrane protein Ghitm 290596 NM_001005908 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1371575_at BF281185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281185 /DB_XREF=gi:11212339 /DB_XREF=EST445860 /CLONE=RGIAC38 /FEA=EST /CNT=31 /TID=Rn.2762.1 /TIER=Stack /STK=19 /UG=Rn.2762 /UG_TITLE=ESTs BF281185 1371576_at AW142276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142276 /DB_XREF=gi:6162165 /DB_XREF=EST292512 /CLONE=RGIAR03 /FEA=EST /CNT=32 /TID=Rn.3406.1 /TIER=Stack /STK=19 /UG=Rn.3406 /UG_TITLE=ESTs AW142276 mitochondrial ribosomal protein S36 Mrps36 294696 NM_001191605 /// XM_001071159 /// XM_215468 0005739 // mitochondrion // not recorded /// 0005763 // mitochondrial small ribosomal subunit // not recorded 1371577_at AI171362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171362 /DB_XREF=gi:3711402 /DB_XREF=EST217318 /CLONE=RMUBJ72 /FEA=EST /CNT=32 /TID=Rn.1467.1 /TIER=Stack /STK=19 /UG=Rn.1467 /UG_TITLE=ESTs, Moderately similar to S17854 NADH dehydrogenase (H.sapiens) AI171362 NADH dehydrogenase (ubiquinone) Fe-S protein 1 Ndufs1 301458 NM_001005550 0006800 // oxygen and reactive oxygen species metabolic process // not recorded /// 0006800 // oxygen and reactive oxygen species metabolic process // inferred from sequence or structural similarity /// 0006800 // oxygen and reactive oxygen species metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from sequence or structural similarity /// 0006915 // apoptosis // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0042773 // ATP synthesis coupled electron transport // inferred from electronic annotation /// 0045333 // cellular respiration // not recorded /// 0045333 // cellular respiration // inferred from sequence or structural similarity /// 0045333 // cellular respiration // inferred from electronic annotation /// 0046034 // ATP metabolic process // not recorded /// 0046034 // ATP metabolic process // inferred from sequence or structural similarity /// 0046034 // ATP metabolic process // inferred from electronic annotation /// 0051881 // regulation of mitochondrial membrane potential // not recorded /// 0051881 // regulation of mitochondrial membrane potential // inferred from sequence or structural similarity /// 0051881 // regulation of mitochondrial membrane potential // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0005747 // mitochondrial respiratory chain complex I // inferred from sequence or structural similarity /// 0005747 // mitochondrial respiratory chain complex I // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // not recorded /// 0005758 // mitochondrial intermembrane space // inferred from sequence or structural similarity /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0003954 // NADH dehydrogenase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008137 // NADH dehydrogenase (ubiquinone) activity // not recorded /// 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from sequence or structural similarity /// 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016651 // oxidoreductase activity, acting on NADH or NADPH // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 1371578_at AW915101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915101 /DB_XREF=gi:8080774 /DB_XREF=EST346392 /CLONE=RGICJ32 /FEA=EST /CNT=28 /TID=Rn.20.1 /TIER=Stack /STK=19 /UG=Rn.20 /UG_TITLE=ESTs AW915101 protein kinase, cAMP-dependent, catalytic, alpha Prkaca 25636 NM_001100922 0001707 // mesoderm formation // inferred from electronic annotation /// 0001707 // mesoderm formation // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007243 // intracellular protein kinase cascade // not recorded /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0016310 // phosphorylation // not recorded /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0034199 // activation of protein kinase A activity // not recorded /// 0043457 // regulation of cellular respiration // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // not recorded /// 0046827 // positive regulation of protein export from nucleus // inferred from electronic annotation /// 0046827 // positive regulation of protein export from nucleus // not recorded /// 0050804 // regulation of synaptic transmission // not recorded /// 0050804 // regulation of synaptic transmission // inferred from electronic annotation /// 0051447 // negative regulation of meiotic cell cycle // inferred from direct assay /// 0051966 // regulation of synaptic transmission, glutamatergic // inferred from direct assay /// 0071374 // cellular response to parathyroid hormone stimulus // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005952 // cAMP-dependent protein kinase complex // inferred from direct assay /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0031594 // neuromuscular junction // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004691 // cAMP-dependent protein kinase activity // not recorded /// 0004691 // cAMP-dependent protein kinase activity // inferred from direct assay /// 0004691 // cAMP-dependent protein kinase activity // inferred from electronic annotation /// 0004862 // cAMP-dependent protein kinase inhibitor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0034237 // protein kinase A regulatory subunit binding // inferred by curator 1371579_at AI012456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012456 /DB_XREF=gi:3226288 /DB_XREF=EST206907 /CLONE=RPLAX47 /FEA=EST /CNT=26 /TID=Rn.29528.1 /TIER=Stack /STK=19 /UG=Rn.29528 /UG_TITLE=ESTs AI012456 Similar to signal peptidase complex subunit 3 homolog LOC680782 680782 NM_001191073 /// XM_001058844 /// XM_002725190 0006465 // signal peptide processing // inferred from electronic annotation 0005783 // endoplasmic reticulum // not recorded /// 0005787 // signal peptidase complex // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008233 // peptidase activity // inferred from electronic annotation 1371580_at AI102725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102725 /DB_XREF=gi:3707423 /DB_XREF=EST212014 /CLONE=REMBR75 /FEA=EST /CNT=26 /TID=Rn.36741.1 /TIER=Stack /STK=19 /UG=Rn.36741 /UG_TITLE=ESTs AI102725 ER lipid raft associated 1 Erlin1 293939 NM_001106353 0030433 // ER-associated protein catabolic process // inferred from electronic annotation /// 0030433 // ER-associated protein catabolic process // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371581_at BM388899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388899 /DB_XREF=gi:18188952 /DB_XREF=UI-R-DZ0-ckn-b-23-0-UI.s1 /CLONE=UI-R-DZ0-ckn-b-23-0-UI /FEA=EST /CNT=33 /TID=Rn.2018.1 /TIER=Stack /STK=19 /UG=Rn.2018 /UG_TITLE=ESTs BM388899 splicing factor, arginine/serine-rich 1 Sfrs1 689890 NM_001109552 0001701 // in utero embryonic development // not recorded /// 0008380 // RNA splicing // not recorded /// 0060048 // cardiac muscle contraction // not recorded 0005634 // nucleus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0050733 // RS domain binding // not recorded 1371582_at BM389129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389129 /DB_XREF=gi:18189182 /DB_XREF=UI-R-DZ0-cko-g-03-0-UI.s1 /CLONE=UI-R-DZ0-cko-g-03-0-UI /FEA=EST /CNT=31 /TID=Rn.898.1 /TIER=Stack /STK=19 /UG=Rn.898 /UG_TITLE=ESTs, Weakly similar to A57284 spermatid perinuclear RNA-binding protein Spnr - mouse (M.musculus) BM389129 interleukin enhancer binding factor 2 Ilf2 310612 NM_001047886 0006350 // transcription // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from sequence or structural similarity /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from sequence or structural similarity /// 0030528 // transcription regulator activity // inferred from electronic annotation 1371583_at AI598399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598399 /DB_XREF=gi:4607447 /DB_XREF=EST250102 /CLONE=REMDQ69 /FEA=EST /CNT=27 /TID=Rn.18057.1 /TIER=Stack /STK=19 /UG=Rn.18057 /UG_TITLE=ESTs, Weakly similar to cold inducible RNA-binding protein (Rattus norvegicus) (R.norvegicus) AI598399 RNA binding motif (RNP1, RRM) protein 3 Rbm3 114488 NM_053696 0006412 // translation // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006417 // regulation of translation // not recorded /// 0006417 // regulation of translation // inferred from sequence or structural similarity /// 0006950 // response to stress // inferred from electronic annotation /// 0009409 // response to cold // inferred from electronic annotation /// 0009409 // response to cold // not recorded /// 0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from electronic annotation /// 0035196 // production of miRNAs involved in gene silencing by miRNA // not recorded /// 0045727 // positive regulation of translation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0015934 // large ribosomal subunit // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0043023 // ribosomal large subunit binding // inferred from electronic annotation /// 0043023 // ribosomal large subunit binding // not recorded 1371584_at BM390843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390843 /DB_XREF=gi:18190896 /DB_XREF=UI-R-CN1-cjo-n-08-0-UI.s1 /CLONE=UI-R-CN1-cjo-n-08-0-UI /FEA=EST /CNT=26 /TID=Rn.17856.1 /TIER=Stack /STK=19 /UG=Rn.17856 /UG_TITLE=ESTs, Highly similar to T17263 hypothetical protein DKFZp727M231.1 (H.sapiens) BM390843 transient receptor potential cation channel, subfamily C, member 4 associated protein Trpc4ap 362247 NM_001100748 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0016567 // protein ubiquitination // not recorded 0031464 // Cul4A-RING ubiquitin ligase complex // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371585_at BE108192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108192 /DB_XREF=gi:8500262 /DB_XREF=UI-R-BS1-ayw-b-02-0-UI.s1 /CLONE=UI-R-BS1-ayw-b-02-0-UI /FEA=EST /CNT=25 /TID=Rn.88.1 /TIER=Stack /STK=19 /UG=Rn.88 /UG_TITLE=ESTs, Weakly similar to ELONGATION FACTOR 1-ALPHA 1 (R.norvegicus) BE108192 G1 to S phase transition 1 Gspt1 24420 NM_001003978 0006412 // translation // traceable author statement /// 0006479 // protein methylation // not recorded /// 0006479 // protein methylation // inferred from electronic annotation /// 0006919 // activation of caspase activity // inferred from mutant phenotype /// 0016567 // protein ubiquitination // inferred from mutant phenotype /// 0042981 // regulation of apoptosis // inferred from mutant phenotype 0000166 // nucleotide binding // inferred from electronic annotation /// 0003747 // translation release factor activity // not recorded /// 0003747 // translation release factor activity // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1371586_at AF209972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF209972 /DB_XREF=gi:6724329 /DB_XREF=AF209972 /CLONE=A19-1 /FEA=EST /CNT=25 /TID=Rn.30778.1 /TIER=Stack /STK=19 /UG=Rn.30778 /UG_TITLE=ESTs, Moderately similar to CGI-118 protein (H.sapiens) AF209972 mitochondrial ribosomal protein L48 Mrpl48 293149 NM_001106282 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1371587_at AA817829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817829 /DB_XREF=gi:4198355 /DB_XREF=UI-R-A0-ae-e-03-0-UI.s1 /CLONE=UI-R-A0-ae-e-03-0-UI /FEA=EST /CNT=29 /TID=Rn.1123.1 /TIER=Stack /STK=19 /UG=Rn.1123 /UG_TITLE=ESTs AA817829 mitogen-activated protein kinase kinase 1 interacting protein 1 Map2k1ip1 362045 NM_001008375 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1371588_at AA686007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA686007 /DB_XREF=gi:2672605 /DB_XREF=EST108925 /CLONE=RPNAI64 /FEA=EST /CNT=25 /TID=Rn.2214.1 /TIER=Stack /STK=19 /UG=Rn.2214 /UG_TITLE=ESTs AA686007 1371589_at BM386159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386159 /DB_XREF=gi:18186212 /DB_XREF=UI-R-CN1-cjf-i-19-0-UI.s1 /CLONE=UI-R-CN1-cjf-i-19-0-UI /FEA=EST /CNT=24 /TID=Rn.2209.1 /TIER=Stack /STK=19 /UG=Rn.2209 /UG_TITLE=ESTs, Moderately similar to T25763 hypothetical protein F46F11.4 - Caenorhabditis elegans (C.elegans) BM386159 ubiquitin-like 5 Ubl5 500954 NM_001048243 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1371590_s_at BM386159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386159 /DB_XREF=gi:18186212 /DB_XREF=UI-R-CN1-cjf-i-19-0-UI.s1 /CLONE=UI-R-CN1-cjf-i-19-0-UI /FEA=EST /CNT=24 /TID=Rn.2209.1 /TIER=Stack /STK=19 /UG=Rn.2209 /UG_TITLE=ESTs, Moderately similar to T25763 hypothetical protein F46F11.4 - Caenorhabditis elegans (C.elegans) BM386159 ubiquitin-like 5 Ubl5 500954 NM_001048243 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1371591_at AA858667 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858667 /DB_XREF=gi:4228860 /DB_XREF=UI-R-A0-be-e-09-0-UI.s1 /CLONE=UI-R-A0-be-e-09-0-UI /FEA=EST /CNT=25 /TID=Rn.16872.1 /TIER=Stack /STK=19 /UG=Rn.16872 /UG_TITLE=ESTs AA858667 mitochondrial ribosomal protein S18A Mrps18a 301249 NM_198756 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005763 // mitochondrial small ribosomal subunit // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1371592_at AI600236 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600236 /DB_XREF=gi:4609284 /DB_XREF=EST251939 /CLONE=REMEN62 /FEA=EST /CNT=25 /TID=Rn.2759.1 /TIER=Stack /STK=19 /UG=Rn.2759 /UG_TITLE=ESTs, Highly similar to TYROSINE-PROTEIN KINASE CSK (R.norvegicus) AI600236 c-src tyrosine kinase Csk 315707 NM_001030039 0006468 // protein phosphorylation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1371593_at BI296121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296121 /DB_XREF=gi:14960245 /DB_XREF=UI-R-DK0-cew-e-12-0-UI.s1 /CLONE=UI-R-DK0-cew-e-12-0-UI /FEA=EST /CNT=24 /TID=Rn.8378.1 /TIER=Stack /STK=19 /UG=Rn.8378 /UG_TITLE=ESTs BI296121 1371594_at AA892378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892378 /DB_XREF=gi:3019257 /DB_XREF=EST196181 /CLONE=RKIAP70 /FEA=EST /CNT=24 /TID=Rn.1298.1 /TIER=Stack /STK=19 /UG=Rn.1298 /UG_TITLE=ESTs, Weakly similar to F13B9.8.p (Caenorhabditis elegans) (C.elegans) AA892378 fission 1 (mitochondrial outer membrane) homolog (S. cerevisiae) Fis1 288584 NM_001105919 0000266 // mitochondrial fission // not recorded /// 0000266 // mitochondrial fission // inferred from sequence or structural similarity /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from sequence or structural similarity /// 0006915 // apoptosis // inferred from electronic annotation /// 0016559 // peroxisome fission // not recorded /// 0016559 // peroxisome fission // inferred from sequence or structural similarity 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0005779 // integral to peroxisomal membrane // not recorded /// 0005779 // integral to peroxisomal membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031307 // integral to mitochondrial outer membrane // not recorded /// 0031307 // integral to mitochondrial outer membrane // inferred from sequence or structural similarity 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371595_at BM384301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384301 /DB_XREF=gi:18184354 /DB_XREF=UI-R-DY0-ckr-f-06-0-UI.s1 /CLONE=UI-R-DY0-ckr-f-06-0-UI /FEA=EST /CNT=24 /TID=Rn.8145.1 /TIER=Stack /STK=19 /UG=Rn.8145 /UG_TITLE=ESTs BM384301 1371596_at AI008971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008971 /DB_XREF=gi:3222803 /DB_XREF=EST203422 /CLONE=REMBG43 /FEA=EST /CNT=23 /TID=Rn.7235.1 /TIER=Stack /STK=19 /UG=Rn.7235 /UG_TITLE=ESTs AI008971 ribonucleic acid binding protein S1 Rnps1 287113 NM_001011890 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371597_at BI281621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281621 /DB_XREF=gi:14931535 /DB_XREF=UI-R-CT0s-cau-e-07-0-UI.s1 /CLONE=UI-R-CT0s-cau-e-07-0-UI /FEA=EST /CNT=25 /TID=Rn.6929.1 /TIER=Stack /STK=19 /UG=Rn.6929 /UG_TITLE=ESTs, Highly similar to AR21_HUMAN ARP23 COMPLEX 21 KD SUBUNIT (H.sapiens) BI281621 ring finger protein 187 Rnf187 360533 NM_001164264 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1371598_at BI278598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278598 /DB_XREF=gi:14925603 /DB_XREF=UI-R-CW0-bxn-f-02-0-UI.s1 /CLONE=UI-R-CW0-bxn-f-02-0-UI /FEA=EST /CNT=23 /TID=Rn.94.1 /TIER=Stack /STK=19 /UG=Rn.94 /UG_TITLE=ESTs BI278598 1371599_at AI228587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228587 /DB_XREF=gi:3812474 /DB_XREF=EST225282 /CLONE=RBRCW81 /FEA=EST /CNT=23 /TID=Rn.1420.1 /TIER=Stack /STK=19 /UG=Rn.1420 /UG_TITLE=ESTs, Weakly similar to next to the Brca1 (Mus musculus) (M.musculus) AI228587 similar to chromosome 6 open reading frame 106 isoform a LOC294154 294154 NM_001039607 1371600_at AA943815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943815 /DB_XREF=gi:3103731 /DB_XREF=EST199314 /CLONE=RBRAQ05 /FEA=EST /CNT=23 /TID=Rn.7648.1 /TIER=Stack /STK=19 /UG=Rn.7648 /UG_TITLE=ESTs, Highly similar to IPKG MOUSE CAMP-DEPENDENT PROTEIN KINASE INHIBITOR, GAMMA FORM (M.musculus) AA943815 protein kinase inhibitor, gamma Pkig 266709 NM_153469 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0007165 // signal transduction // inferred from mutant phenotype /// 0042308 // negative regulation of protein import into nucleus // inferred from electronic annotation /// 0042308 // negative regulation of protein import into nucleus // not recorded /// 0042326 // negative regulation of phosphorylation // not recorded 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // traceable author statement 0004862 // cAMP-dependent protein kinase inhibitor activity // inferred from mutant phenotype /// 0004862 // cAMP-dependent protein kinase inhibitor activity // not recorded /// 0004862 // cAMP-dependent protein kinase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1371601_at BE107520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107520 /DB_XREF=gi:8499625 /DB_XREF=UI-R-BS1-ayu-f-08-0-UI.s1 /CLONE=UI-R-BS1-ayu-f-08-0-UI /FEA=EST /CNT=23 /TID=Rn.7940.1 /TIER=Stack /STK=19 /UG=Rn.7940 /UG_TITLE=ESTs BE107520 mannosidase, alpha, class 1B, member 1 Man1b1 499751 XM_001077558 /// XM_575086 0008152 // metabolic process // inferred from electronic annotation /// 0030433 // ER-associated protein catabolic process // inferred from electronic annotation /// 0030433 // ER-associated protein catabolic process // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004571 // mannosyl-oligosaccharide 1,2-alpha-mannosidase activity // inferred from electronic annotation /// 0004571 // mannosyl-oligosaccharide 1,2-alpha-mannosidase activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation 1371602_at BI274110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274110 /DB_XREF=gi:14884723 /DB_XREF=UI-R-CW0-bwf-a-12-0-UI.s1 /CLONE=UI-R-CW0-bwf-a-12-0-UI /FEA=EST /CNT=22 /TID=Rn.16430.1 /TIER=Stack /STK=19 /UG=Rn.16430 /UG_TITLE=ESTs BI274110 tetraspanin 9 Tspan9 312728 NM_001107890 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1371603_at BI291379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291379 /DB_XREF=gi:14950867 /DB_XREF=UI-R-CV2-cgp-d-06-0-UI.s1 /CLONE=UI-R-CV2-cgp-d-06-0-UI /FEA=EST /CNT=22 /TID=Rn.18038.1 /TIER=Stack /STK=19 /UG=Rn.18038 /UG_TITLE=ESTs BI291379 proline rich 3 Prr3 361788 NM_212544 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371604_at AA858969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858969 /DB_XREF=gi:4229243 /DB_XREF=UI-R-A0-aj-d-05-0-UI.s3 /CLONE=UI-R-A0-aj-d-05-0-UI /FEA=EST /CNT=22 /TID=Rn.2509.1 /TIER=Stack /STK=19 /UG=Rn.2509 /UG_TITLE=ESTs, Moderately similar to I56526 interleukin 1 receptor type I - rat (R.norvegicus) AA858969 mitochondrial ribosomal protein L34 Mrpl34 290632 NM_001006965 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005762 // mitochondrial large ribosomal subunit // inferred from electronic annotation /// 0005762 // mitochondrial large ribosomal subunit // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1371605_at AI710281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI710281 /DB_XREF=gi:5000057 /DB_XREF=UI-R-AB1-yt-f-03-0-UI.s1 /CLONE=UI-R-AB1-yt-f-03-0-UI /FEA=EST /CNT=22 /TID=Rn.8298.1 /TIER=Stack /STK=19 /UG=Rn.8298 /UG_TITLE=ESTs, Highly similar to 13kDa differentiation-associated protein; NADH: ubiquinone oxidoreductase (Homo sapiens) (H.sapiens) AI710281 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 Ndufa12 299739 NM_001106781 0006979 // response to oxidative stress // not recorded 0005739 // mitochondrion // not recorded /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0016020 // membrane // inferred from electronic annotation 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation 1371606_at AA819633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819633 /DB_XREF=gi:4227970 /DB_XREF=UI-R-A0-an-e-10-0-UI.s1 /CLONE=UI-R-A0-an-e-10-0-UI /FEA=EST /CNT=22 /TID=Rn.16646.1 /TIER=Stack /STK=19 /UG=Rn.16646 /UG_TITLE=ESTs AA819633 WD and tetratricopeptide repeats 1 Wdtc1 313020 NM_001107908 0001701 // in utero embryonic development // not recorded /// 0006006 // glucose metabolic process // not recorded /// 0008361 // regulation of cell size // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0032869 // cellular response to insulin stimulus // not recorded /// 0035264 // multicellular organism growth // not recorded /// 0045717 // negative regulation of fatty acid biosynthetic process // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0055082 // cellular chemical homeostasis // not recorded 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded 0004857 // enzyme inhibitor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0042393 // histone binding // not recorded /// 0042826 // histone deacetylase binding // not recorded 1371607_at AI230787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230787 /DB_XREF=gi:3814674 /DB_XREF=EST227482 /CLONE=REMDB26 /FEA=EST /CNT=22 /TID=Rn.16056.1 /TIER=Stack /STK=19 /UG=Rn.16056 /UG_TITLE=ESTs, Moderately similar to MICROTUBULE-ASSOCIATED PROTEIN 4 (M.musculus) AI230787 microtubule-associated protein 4 Map4 367171 NM_001024278 0007026 // negative regulation of microtubule depolymerization // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0005515 // protein binding // not recorded 1371608_at BI275958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275958 /DB_XREF=gi:14920396 /DB_XREF=UI-R-CX0-bxi-e-02-0-UI.s1 /CLONE=UI-R-CX0-bxi-e-02-0-UI /FEA=EST /CNT=24 /TID=Rn.11777.1 /TIER=Stack /STK=19 /UG=Rn.11777 /UG_TITLE=ESTs, Weakly similar to M88.2.p (Caenorhabditis elegans) (C.elegans) BI275958 mitochondrial ribosomal protein S34 Mrps34 287126 NM_001105771 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0005515 // protein binding // not recorded 1371609_at AI232270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232270 /DB_XREF=gi:3816150 /DB_XREF=EST228958 /CLONE=RKIBZ51 /FEA=EST /CNT=23 /TID=Rn.11498.1 /TIER=Stack /STK=19 /UG=Rn.11498 /UG_TITLE=ESTs, Weakly similar to JC4914 anti-sigma cross-reacting protein homolog I beta precursor (H.sapiens) AI232270 homolog of zebrafish ES1 RGD1303003 294326 NM_001004225 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005814 // centriole // inferred from electronic annotation /// 0005814 // centriole // not recorded 1371610_at AI411017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411017 /DB_XREF=gi:4254521 /DB_XREF=EST239311 /CLONE=RKIEG08 /FEA=EST /CNT=23 /TID=Rn.3410.1 /TIER=Stack /STK=19 /UG=Rn.3410 /UG_TITLE=ESTs AI411017 1371611_at BM387363 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387363 /DB_XREF=gi:18187416 /DB_XREF=UI-R-CN1-cjj-g-05-0-UI.s1 /CLONE=UI-R-CN1-cjj-g-05-0-UI /FEA=EST /CNT=23 /TID=Rn.2878.1 /TIER=Stack /STK=19 /UG=Rn.2878 /UG_TITLE=ESTs, Highly similar to EXT2 MOUSE EXOSTOSIN-2 (M.musculus) BM387363 exostoses (multiple) 2 Ext2 311215 NM_001107751 0001503 // ossification // inferred from electronic annotation /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0006024 // glycosaminoglycan biosynthetic process // inferred from electronic annotation /// 0015012 // heparan sulfate proteoglycan biosynthetic process // inferred from electronic annotation /// 0015014 // heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0033692 // cellular polysaccharide biosynthetic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031227 // intrinsic to endoplasmic reticulum membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008375 // acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0015020 // glucuronosyltransferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 1371612_at AI177656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177656 /DB_XREF=gi:3728294 /DB_XREF=EST221294 /CLONE=RPLCD71 /FEA=EST /CNT=22 /TID=Rn.1591.1 /TIER=Stack /STK=19 /UG=Rn.1591 /UG_TITLE=ESTs, Weakly similar to S40903 FUN4 protein - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AI177656 tRNA splicing endonuclease 34 homolog (S. cerevisiae) Tsen34 292534 NM_001006968 0000379 // tRNA-type intron splice site recognition and cleavage // inferred from electronic annotation /// 0006388 // tRNA splicing, via endonucleolytic cleavage and ligation // inferred from electronic annotation 0000214 // tRNA-intron endonuclease complex // inferred from electronic annotation 0000213 // tRNA-intron endonuclease activity // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371613_at BM386781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386781 /DB_XREF=gi:18186834 /DB_XREF=UI-R-CN1-cjh-a-04-0-UI.s1 /CLONE=UI-R-CN1-cjh-a-04-0-UI /FEA=EST /CNT=21 /TID=Rn.2097.1 /TIER=Stack /STK=19 /UG=Rn.2097 /UG_TITLE=ESTs BM386781 engulfment and cell motility 2 Elmo2 362271 NM_001134955 0006909 // phagocytosis // inferred from electronic annotation 0005856 // cytoskeleton // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1371614_at AI169001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169001 /DB_XREF=gi:3705309 /DB_XREF=EST214829 /CLONE=RKIBL71 /FEA=EST /CNT=21 /TID=Rn.6224.1 /TIER=Stack /STK=19 /UG=Rn.6224 /UG_TITLE=ESTs AI169001 ATG12 autophagy related 12 homolog (S. cerevisiae) Atg12 361321 NM_001038495 0000045 // autophagic vacuole assembly // inferred from electronic annotation /// 0000045 // autophagic vacuole assembly // not recorded /// 0006914 // autophagy // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0034045 // pre-autophagosomal structure membrane // inferred from electronic annotation /// 0034045 // pre-autophagosomal structure membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371615_at BI279069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279069 /DB_XREF=gi:14926531 /DB_XREF=UI-R-CZ0-byi-g-11-0-UI.s1 /CLONE=UI-R-CZ0-byi-g-11-0-UI /FEA=EST /CNT=21 /TID=Rn.9523.1 /TIER=Stack /STK=19 /UG=Rn.9523 /UG_TITLE=ESTs, Weakly similar to T15251 hypothetical protein K07B1.4 - Caenorhabditis elegans (C.elegans) BI279069 diacylglycerol O-acyltransferase homolog 2 (mouse) Dgat2 252900 NM_001012345 0006071 // glycerol metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0019432 // triglyceride biosynthetic process // inferred from electronic annotation /// 0019432 // triglyceride biosynthetic process // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0003846 // 2-acylglycerol O-acyltransferase activity // inferred from electronic annotation /// 0003846 // 2-acylglycerol O-acyltransferase activity // not recorded /// 0004144 // diacylglycerol O-acyltransferase activity // inferred from direct assay /// 0004144 // diacylglycerol O-acyltransferase activity // not recorded /// 0004144 // diacylglycerol O-acyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation 1371616_at AW524495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524495 /DB_XREF=gi:7166880 /DB_XREF=UI-R-BO0-ahz-b-03-0-UI.s1 /CLONE=UI-R-BO0-ahz-b-03-0-UI /FEA=EST /CNT=21 /TID=Rn.23024.1 /TIER=Stack /STK=19 /UG=Rn.23024 /UG_TITLE=ESTs AW524495 1371617_at AI599711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599711 /DB_XREF=gi:4608759 /DB_XREF=EST251414 /CLONE=REMEG59 /FEA=EST /CNT=21 /TID=Rn.16918.1 /TIER=Stack /STK=19 /UG=Rn.16918 /UG_TITLE=ESTs, Weakly similar to T06D8.8.p (Caenorhabditis elegans) (C.elegans) AI599711 proteasome (prosome, macropain) 26S subunit, non-ATPase, 13 Psmd13 365388 NM_001108925 0007127 // meiosis I // inferred from electronic annotation /// 0007127 // meiosis I // not recorded /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation /// 0005838 // proteasome regulatory particle // inferred from electronic annotation /// 0005838 // proteasome regulatory particle // not recorded 0005515 // protein binding // not recorded 1371618_s_at AI229029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229029 /DB_XREF=gi:3812916 /DB_XREF=EST225724 /CLONE=RBRDD15 /FEA=EST /CNT=25 /TID=Rn.8216.1 /TIER=Stack /STK=19 /UG=Rn.8216 /UG_TITLE=ESTs, Highly similar to TBB1 RAT TUBULIN BETA CHAIN (R.norvegicus) AI229029 tubulin, beta 3 Tubb3 246118 NM_139254 0001764 // neuron migration // inferred from electronic annotation /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007067 // mitosis // inferred from mutant phenotype /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from sequence or structural similarity /// 0030182 // neuron differentiation // inferred from mutant phenotype /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0032720 // negative regulation of tumor necrosis factor production // inferred from electronic annotation /// 0051225 // spindle assembly // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation /// 0070914 // UV-damage excision repair // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0004980 // melanocyte-stimulating hormone receptor activity // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // non-traceable author statement /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0042277 // peptide binding // inferred from physical interaction /// 0042288 // MHC class I protein binding // inferred from electronic annotation 1371619_at BI296718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296718 /DB_XREF=gi:14961425 /DB_XREF=UI-R-CV2-cgv-e-06-0-UI.s1 /CLONE=UI-R-CV2-cgv-e-06-0-UI /FEA=EST /CNT=21 /TID=Rn.8689.1 /TIER=Stack /STK=19 /UG=Rn.8689 /UG_TITLE=ESTs BI296718 similar to HTGN29 protein; keratinocytes associated transmembrane protein 2 RGD1310352 303122 NM_001106999 0016021 // integral to membrane // inferred from electronic annotation 1371620_at BI279855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279855 /DB_XREF=gi:14928070 /DB_XREF=UI-R-CU0s-cbr-g-03-0-UI.s1 /CLONE=UI-R-CU0s-cbr-g-03-0-UI /FEA=EST /CNT=21 /TID=Rn.6867.1 /TIER=Stack /STK=19 /UG=Rn.6867 /UG_TITLE=ESTs BI279855 PRELI domain containing 1 Prelid1 290995 NM_001009636 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1371621_at BF419441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419441 /DB_XREF=gi:11407430 /DB_XREF=UI-R-CA1-bnr-f-12-0-UI.s1 /CLONE=UI-R-CA1-bnr-f-12-0-UI /FEA=EST /CNT=20 /TID=Rn.63551.1 /TIER=Stack /STK=19 /UG=Rn.63551 /UG_TITLE=ESTs BF419441 1371622_at AA943541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943541 /DB_XREF=gi:3103457 /DB_XREF=EST199040 /CLONE=RBRAL26 /FEA=EST /CNT=20 /TID=Rn.7589.1 /TIER=Stack /STK=19 /UG=Rn.7589 /UG_TITLE=ESTs, Weakly similar to dihydrofolate reductase like (Caenorhabditis elegans) (C.elegans) AA943541 DPH1 homolog (S. cerevisiae) /// candidate tumor suppressor in ovarian cancer 2 Dph1 /// Ovca2 287523 /// 497954 NM_001105809 /// NM_001109036 0008283 // cell proliferation // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0032526 // response to retinoic acid // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371623_at AI411896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411896 /DB_XREF=gi:4255400 /DB_XREF=EST240190 /CLONE=RKIEK05 /FEA=EST /CNT=20 /TID=Rn.8371.1 /TIER=Stack /STK=19 /UG=Rn.8371 /UG_TITLE=ESTs AI411896 hypothetical protein LOC685888 LOC685888 685888 XR_085909 /// XR_086335 0005739 // mitochondrion // not recorded 1371624_at BI279282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279282 /DB_XREF=gi:14926948 /DB_XREF=UI-R-DA0-bym-e-01-0-UI.s1 /CLONE=UI-R-DA0-bym-e-01-0-UI /FEA=EST /CNT=33 /TID=Rn.7550.1 /TIER=Stack /STK=19 /UG=Rn.7550 /UG_TITLE=ESTs, Weakly similar to T46397 hypothetical protein DKFZp434K0920.1 (H.sapiens) BI279282 zinc finger CCCH-type containing 7B Zc3h7b 315158 NM_001130695 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371625_at AA800190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800190 /DB_XREF=gi:4131475 /DB_XREF=EST189687 /CLONE=RHEAM27 /FEA=EST /CNT=23 /TID=Rn.1518.1 /TIER=Stack /STK=19 /UG=Rn.1518 /UG_TITLE=ESTs, Highly similar to S37300 glycogen phosphorylase (R.norvegicus) AA800190 phosphorylase, glycogen; brain Pygb 25739 NM_013188 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from direct assay /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005980 // glycogen catabolic process // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030424 // axon // inferred from direct assay 0004645 // phosphorylase activity // inferred from electronic annotation /// 0005529 // sugar binding // inferred from direct assay /// 0008144 // drug binding // inferred from direct assay /// 0008184 // glycogen phosphorylase activity // inferred from direct assay /// 0008184 // glycogen phosphorylase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred by curator /// 0042803 // protein homodimerization activity // inferred from direct assay 1371626_at BI296671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296671 /DB_XREF=gi:14961331 /DB_XREF=UI-R-CV2-cgv-a-02-0-UI.s1 /CLONE=UI-R-CV2-cgv-a-02-0-UI /FEA=EST /CNT=23 /TID=Rn.68.1 /TIER=Stack /STK=19 /UG=Rn.68 /UG_TITLE=ESTs, Moderately similar to SR68_HUMAN SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN (SRP68) (H.sapiens) BI296671 signal recognition particle 68 Srp68 363707 NM_001108840 0042493 // response to drug // not recorded /// 0042493 // response to drug // inferred from electronic annotation 0005786 // signal recognition particle, endoplasmic reticulum targeting // not recorded /// 0005786 // signal recognition particle, endoplasmic reticulum targeting // inferred from electronic annotation 0005047 // signal recognition particle binding // not recorded /// 0005047 // signal recognition particle binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1371627_at BI277433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277433 /DB_XREF=gi:14923308 /DB_XREF=UI-R-CY0-bxq-a-02-0-UI.s1 /CLONE=UI-R-CY0-bxq-a-02-0-UI /FEA=EST /CNT=21 /TID=Rn.24081.1 /TIER=Stack /STK=19 /UG=Rn.24081 /UG_TITLE=ESTs BI277433 1371628_at BI284359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284359 /DB_XREF=gi:14936965 /DB_XREF=UI-R-CX0s-cco-c-03-0-UI.s1 /CLONE=UI-R-CX0s-cco-c-03-0-UI /FEA=EST /CNT=20 /TID=Rn.44241.1 /TIER=Stack /STK=19 /UG=Rn.44241 /UG_TITLE=ESTs, Weakly similar to A35364 carcinoembryonic antigen-related protein (R.norvegicus) BI284359 carcinoembryonic antigen-related cell adhesion molecule 11 Ceacam11 292668 NM_001025404 0007565 // female pregnancy // inferred from electronic annotation 1371629_at AI105444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105444 /DB_XREF=gi:3705206 /DB_XREF=EST214733 /CLONE=RKIBK44 /FEA=EST /CNT=20 /TID=Rn.272.1 /TIER=Stack /STK=19 /UG=Rn.272 /UG_TITLE=ESTs AI105444 CXXC finger 5 Cxxc5 291670 NM_001007628 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371630_at BI291429 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291429 /DB_XREF=gi:14950958 /DB_XREF=UI-R-CV2-cgq-b-10-0-UI.s1 /CLONE=UI-R-CV2-cgq-b-10-0-UI /FEA=EST /CNT=19 /TID=Rn.76502.1 /TIER=Stack /STK=19 /UG=Rn.76502 /UG_TITLE=ESTs BI291429 1371631_at BF420639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420639 /DB_XREF=gi:11408628 /DB_XREF=UI-R-BJ2-bpy-d-04-0-UI.s1 /CLONE=UI-R-BJ2-bpy-d-04-0-UI /FEA=EST /CNT=19 /TID=Rn.4163.1 /TIER=Stack /STK=19 /UG=Rn.4163 /UG_TITLE=ESTs, Weakly similar to ZK856.11.p (Caenorhabditis elegans) (C.elegans) BF420639 eukaryotic translation initiation factor 1A domain containing Eif1ad 293673 NM_001008305 0006413 // translational initiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation 1371632_at AI231166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231166 /DB_XREF=gi:3815046 /DB_XREF=EST227854 /CLONE=REMDG60 /FEA=EST /CNT=19 /TID=Rn.24553.1 /TIER=Stack /STK=19 /UG=Rn.24553 /UG_TITLE=ESTs, Moderately similar to CO1B_RAT CORONIN 1B (CORONIN 2) (R.norvegicus) AI231166 coronin, actin binding protein 1C Coro1c 501841 NM_001109327 1371633_at BI285669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285669 /DB_XREF=gi:14939547 /DB_XREF=UI-R-CT0s-cas-b-05-0-UI.s1 /CLONE=UI-R-CT0s-cas-b-05-0-UI /FEA=EST /CNT=19 /TID=Rn.18960.1 /TIER=Stack /STK=19 /UG=Rn.18960 /UG_TITLE=ESTs, Weakly similar to M01E11.2.p (Caenorhabditis elegans) (C.elegans) BI285669 catenin, beta like 1 Ctnnbl1 296320 NM_001024870 0006915 // apoptosis // inferred from electronic annotation /// 0016445 // somatic diversification of immunoglobulins // inferred from electronic annotation /// 0016445 // somatic diversification of immunoglobulins // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded 1371634_at BE107851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107851 /DB_XREF=gi:8499956 /DB_XREF=UI-R-CA0-awx-f-01-0-UI.s1 /CLONE=UI-R-CA0-awx-f-01-0-UI /FEA=EST /CNT=31 /TID=Rn.3524.1 /TIER=Stack /STK=18 /UG=Rn.3524 /UG_TITLE=ESTs BE107851 transmembrane protein 126A Tmem126a 293113 NM_001011557 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1371635_at AI599069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599069 /DB_XREF=gi:4608117 /DB_XREF=EST250772 /CLONE=REMEB15 /FEA=EST /CNT=30 /TID=Rn.3566.1 /TIER=Stack /STK=18 /UG=Rn.3566 /UG_TITLE=ESTs, Weakly similar to T20292 hypothetical protein D1046.5 - Caenorhabditis elegans (C.elegans) AI599069 transmembrane protein, adipocyte asscociated 1 Tpra1 85494 NM_053534 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1371636_at BE104321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104321 /DB_XREF=gi:8496421 /DB_XREF=UI-R-BX0-arn-d-08-0-UI.s1 /CLONE=UI-R-BX0-arn-d-08-0-UI /FEA=EST /CNT=30 /TID=Rn.4196.1 /TIER=Stack /STK=18 /UG=Rn.4196 /UG_TITLE=ESTs BE104321 ankyrin repeat domain 13C Ankrd13c 685374 NM_001191570 /// XM_001062165 /// XM_002726058 /// XM_002729125 0005783 // endoplasmic reticulum // not recorded 1371637_at AI411691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411691 /DB_XREF=gi:4255195 /DB_XREF=EST239985 /CLONE=ROVEM08 /FEA=EST /CNT=26 /TID=Rn.1586.1 /TIER=Stack /STK=18 /UG=Rn.1586 /UG_TITLE=ESTs AI411691 heterochromatin protein 1, binding protein 3 Hp1bp3 313647 NM_199108 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1371638_at AA858518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858518 /DB_XREF=gi:4229851 /DB_XREF=UI-R-E0-bt-e-04-0-UI.s1 /CLONE=UI-R-E0-bt-e-04-0-UI /FEA=EST /CNT=26 /TID=Rn.2768.1 /TIER=Stack /STK=18 /UG=Rn.2768 /UG_TITLE=ESTs, Weakly similar to T51146 ring-box protein 1 (H.sapiens) AA858518 ring finger protein 7 Rnf7 300948 NM_001106848 0006916 // anti-apoptosis // not recorded /// 0006919 // activation of caspase activity // not recorded /// 0008631 // induction of apoptosis by oxidative stress // not recorded /// 0008637 // apoptotic mitochondrial changes // not recorded /// 0045116 // protein neddylation // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019788 // NEDD8 ligase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1371639_at BF291006 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291006 /DB_XREF=gi:11222076 /DB_XREF=EST455597 /CLONE=RGIIH44 /FEA=EST /CNT=25 /TID=Rn.2547.1 /TIER=Stack /STK=18 /UG=Rn.2547 /UG_TITLE=ESTs, Weakly similar to T27697 hypothetical protein ZK1128.8 - Caenorhabditis elegans (C.elegans) BF291006 vacuolar protein sorting 29 homolog (S. cerevisiae) Vps29 288666 NM_001105932 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004647 // phosphoserine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371640_at BF289183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289183 /DB_XREF=gi:11220253 /DB_XREF=EST453774 /CLONE=RGIHC06 /FEA=EST /CNT=25 /TID=Rn.40403.1 /TIER=Stack /STK=18 /UG=Rn.40403 /UG_TITLE=ESTs, Weakly similar to C01F6.9.p (Caenorhabditis elegans) (C.elegans) BF289183 zinc finger protein 706 Zfp706 500855 NM_001126087 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1371641_at BM388827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388827 /DB_XREF=gi:18188880 /DB_XREF=UI-R-DZ0-ckn-c-06-0-UI.s1 /CLONE=UI-R-DZ0-ckn-c-06-0-UI /FEA=EST /CNT=24 /TID=Rn.37029.1 /TIER=Stack /STK=18 /UG=Rn.37029 /UG_TITLE=ESTs, Weakly similar to T-COMPLEX PROTEIN 1, ALPHA SUBUNIT (R.norvegicus) BM388827 chaperonin containing Tcp1, subunit 7 (eta) Cct7 297406 NM_001106603 0006457 // protein folding // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded /// 0005832 // chaperonin-containing T-complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0051082 // unfolded protein binding // inferred from electronic annotation 1371642_at AI169170 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169170 /DB_XREF=gi:3705478 /DB_XREF=EST215004 /CLONE=RKIBO39 /FEA=EST /CNT=24 /TID=Rn.8390.1 /TIER=Stack /STK=18 /UG=Rn.8390 /UG_TITLE=ESTs, Highly similar to EUKARYOTIC INITIATION FACTOR 4A-II (M.musculus) AI169170 eukaryotic translation initiation factor 4A2 Eif4a2 303831 NM_001008335 0006412 // translation // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1371643_at AW143798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143798 /DB_XREF=gi:6163697 /DB_XREF=EST294094 /CLONE=RGICA41 /FEA=EST /CNT=24 /TID=Rn.22279.1 /TIER=Stack /STK=18 /UG=Rn.22279 /UG_TITLE=ESTs AW143798 cyclin D1 Ccnd1 58919 NM_171992 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0000082 // G1/S transition of mitotic cell cycle // inferred from sequence or structural similarity /// 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000320 // re-entry into mitotic cell cycle // inferred from electronic annotation /// 0000320 // re-entry into mitotic cell cycle // not recorded /// 0001889 // liver development // inferred from expression pattern /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from sequence or structural similarity /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007595 // lactation // inferred from electronic annotation /// 0007595 // lactation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0010033 // response to organic substance // inferred from expression pattern /// 0010039 // response to iron ion // inferred from expression pattern /// 0010165 // response to X-ray // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030857 // negative regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030857 // negative regulation of epithelial cell differentiation // not recorded /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0031571 // mitotic cell cycle G1/S DNA damage checkpoint // not recorded /// 0031571 // mitotic cell cycle G1/S DNA damage checkpoint // inferred from sequence or structural similarity /// 0031571 // mitotic cell cycle G1/S DNA damage checkpoint // inferred from electronic annotation /// 0032026 // response to magnesium ion // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0033197 // response to vitamin E // inferred from expression pattern /// 0033327 // Leydig cell differentiation // inferred from mutant phenotype /// 0033598 // mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0033598 // mammary gland epithelial cell proliferation // not recorded /// 0042325 // regulation of phosphorylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045444 // fat cell differentiation // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // not recorded /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0050790 // regulation of catalytic activity // not recorded /// 0051301 // cell division // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from expression pattern /// 0051726 // regulation of cell cycle // not recorded /// 0051726 // regulation of cell cycle // traceable author statement /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060749 // mammary gland alveolus development // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // not recorded /// 0070141 // response to UV-A // inferred from electronic annotation /// 0070141 // response to UV-A // not recorded /// 0071445 // cellular response to protein stimulus // not recorded 0000307 // cyclin-dependent protein kinase holoenzyme complex // inferred from electronic annotation /// 0000307 // cyclin-dependent protein kinase holoenzyme complex // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded 0004672 // protein kinase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016538 // cyclin-dependent protein kinase regulator activity // inferred from electronic annotation /// 0016538 // cyclin-dependent protein kinase regulator activity // not recorded /// 0019899 // enzyme binding // not recorded /// 0019901 // protein kinase binding // inferred from direct assay /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1371644_at BF283086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283086 /DB_XREF=gi:11214156 /DB_XREF=EST447677 /CLONE=RGIDX31 /FEA=EST /CNT=23 /TID=Rn.3616.1 /TIER=Stack /STK=18 /UG=Rn.3616 /UG_TITLE=ESTs BF283086 twinfilin, actin-binding protein, homolog 1 (Drosophila) Twf1 315265 NM_001008521 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0016310 // phosphorylation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded 1371645_at BI284339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284339 /DB_XREF=gi:14936925 /DB_XREF=UI-R-CX0s-cco-a-05-0-UI.s1 /CLONE=UI-R-CX0s-cco-a-05-0-UI /FEA=EST /CNT=27 /TID=Rn.3965.1 /TIER=Stack /STK=18 /UG=Rn.3965 /UG_TITLE=ESTs, Highly similar to JC5105 stromal cell-derived factor 2 - mouse (M.musculus) BI284339 stromal cell derived factor 2 Sdf2 287470 NM_001105803 0016020 // membrane // inferred from electronic annotation 1371646_at AI008441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008441 /DB_XREF=gi:3222273 /DB_XREF=EST202892 /CLONE=REMAX36 /FEA=EST /CNT=25 /TID=Rn.915.1 /TIER=Stack /STK=18 /UG=Rn.915 /UG_TITLE=ESTs, Highly similar to G01922 phosphogluconate dehydrogenase (H.sapiens) AI008441 6-phosphogluconate dehydrogenase, decarboxylating-like LOC100363662 100363662 XM_002726659 1371647_at AA963367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963367 /DB_XREF=gi:4278291 /DB_XREF=UI-R-E1-ga-g-12-0-UI.s1 /CLONE=UI-R-E1-ga-g-12-0-UI /FEA=EST /CNT=24 /TID=Rn.6760.1 /TIER=Stack /STK=18 /UG=Rn.6760 /UG_TITLE=ESTs AA963367 transmembrane 9 superfamily member 3 Tm9sf3 309475 XM_002725800 /// XM_220013 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // not recorded 1371648_at BF284000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284000 /DB_XREF=gi:11215070 /DB_XREF=EST448591 /CLONE=RGIEJ71 /FEA=EST /CNT=23 /TID=Rn.8402.2 /TIER=Stack /STK=18 /UG=Rn.8402 /LL=64470 /UG_GENE=Ddb1 /UG_TITLE=damage-specific DNA binding protein 1 BF284000 damage-specific DNA binding protein 1 Ddb1 64470 XM_002725785 /// XM_002728866 0000075 // cell cycle checkpoint // inferred from electronic annotation /// 0000075 // cell cycle checkpoint // not recorded /// 0000718 // nucleotide-excision repair, DNA damage removal // not recorded /// 0006281 // DNA repair // traceable author statement /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0019005 // SCF ubiquitin ligase complex // inferred from electronic annotation /// 0031464 // Cul4A-RING ubiquitin ligase complex // not recorded /// 0031464 // Cul4A-RING ubiquitin ligase complex // inferred from sequence or structural similarity /// 0031465 // Cul4B-RING ubiquitin ligase complex // not recorded /// 0031465 // Cul4B-RING ubiquitin ligase complex // inferred from sequence or structural similarity 0003684 // damaged DNA binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371649_at BI289411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289411 /DB_XREF=gi:14946954 /DB_XREF=UI-R-DK0-cfg-f-06-0-UI.s1 /CLONE=UI-R-DK0-cfg-f-06-0-UI /FEA=EST /CNT=22 /TID=Rn.1914.1 /TIER=Stack /STK=18 /UG=Rn.1914 /UG_TITLE=ESTs BI289411 mitochondrial ribosomal protein S24 Mrps24 498406 NM_001077659 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371650_at BI275947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275947 /DB_XREF=gi:14920376 /DB_XREF=UI-R-CX0-bxi-d-02-0-UI.s1 /CLONE=UI-R-CX0-bxi-d-02-0-UI /FEA=EST /CNT=22 /TID=Rn.3339.1 /TIER=Stack /STK=18 /UG=Rn.3339 /UG_TITLE=ESTs, Highly similar to T08759 conserved hypothetical protein DKFZp586K0919.1 (H.sapiens) BI275947 Sumo1/sentrin/SMT3 specific peptidase 3 Senp3 303245 NM_001013116 0006508 // proteolysis // inferred from electronic annotation /// 0019538 // protein metabolic process // not recorded /// 0019538 // protein metabolic process // inferred from electronic annotation 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0071339 // MLL1 complex // not recorded /// 0071339 // MLL1 complex // inferred from electronic annotation 0004843 // ubiquitin-specific protease activity // not recorded /// 0004843 // ubiquitin-specific protease activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation 1371651_at BI295882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295882 /DB_XREF=gi:14959773 /DB_XREF=UI-R-DK0-cfb-g-10-0-UI.s1 /CLONE=UI-R-DK0-cfb-g-10-0-UI /FEA=EST /CNT=22 /TID=Rn.6985.1 /TIER=Stack /STK=18 /UG=Rn.6985 /UG_TITLE=ESTs BI295882 vacuolar protein sorting 25 homolog (S. cerevisiae) Vps25 681059 NM_001173451 /// XM_001060127 0006350 // transcription // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation 1371652_at BF550566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550566 /DB_XREF=gi:11660296 /DB_XREF=UI-R-C0-jl-a-08-0-UI.r1 /CLONE=UI-R-C0-jl-a-08-0-UI /FEA=EST /CNT=21 /TID=Rn.14503.1 /TIER=Stack /STK=18 /UG=Rn.14503 /UG_TITLE=ESTs BF550566 1371653_at BI281955 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281955 /DB_XREF=gi:14932226 /DB_XREF=UI-R-CU0s-cbu-f-04-0-UI.s1 /CLONE=UI-R-CU0s-cbu-f-04-0-UI /FEA=EST /CNT=26 /TID=Rn.3923.1 /TIER=Stack /STK=18 /UG=Rn.3923 /UG_TITLE=ESTs BI281955 1371654_at BF417252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417252 /DB_XREF=gi:11405241 /DB_XREF=UI-R-CN0-blc-h-01-0-UI.s1 /CLONE=UI-R-CN0-blc-h-01-0-UI /FEA=EST /CNT=22 /TID=Rn.1775.1 /TIER=Stack /STK=18 /UG=Rn.1775 /UG_TITLE=ESTs BF417252 similar to RIKEN cDNA 2510039O18 RGD1305350 313699 NM_001135781 1371655_at BI281806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281806 /DB_XREF=gi:14931926 /DB_XREF=UI-R-CU0s-cbs-g-04-0-UI.s1 /CLONE=UI-R-CU0s-cbs-g-04-0-UI /FEA=EST /CNT=22 /TID=Rn.8967.1 /TIER=Stack /STK=18 /UG=Rn.8967 /UG_TITLE=ESTs, Highly similar to MPU1_MOUSE MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 PROTEIN (SUPPRESSOR OF LEC15 AND LEC35 GLYCOSYLATION MUTATION HOMOLOG) (SL15) (M.musculus) BI281806 mannose-P-dolichol utilization defect 1 Mpdu1 303244 NM_001107011 0009312 // oligosaccharide biosynthetic process // not recorded 0005783 // endoplasmic reticulum // not recorded 0005515 // protein binding // not recorded 1371656_at BI283657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283657 /DB_XREF=gi:14935624 /DB_XREF=UI-R-CW0s-ccg-b-09-0-UI.s1 /CLONE=UI-R-CW0s-ccg-b-09-0-UI /FEA=EST /CNT=21 /TID=Rn.37539.2 /TIER=Stack /STK=18 /UG=Rn.37539 /LL=25622 /UG_GENE=Ptpn11 /UG_TITLE=SH-PTP2 protein tyrosine phosphatase, non-receptor type 11 BI283657 chaperonin containing Tcp1, subunit 4 (delta) Cct4 29374 NM_182814 0006457 // protein folding // traceable author statement /// 0006457 // protein folding // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // inferred from electronic annotation /// 0051085 // chaperone mediated protein folding requiring cofactor // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005832 // chaperonin-containing T-complex // inferred from electronic annotation /// 0005832 // chaperonin-containing T-complex // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // traceable author statement /// 0051082 // unfolded protein binding // inferred from electronic annotation 1371657_at AA799692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799692 /DB_XREF=gi:2862647 /DB_XREF=EST189189 /CLONE=RHEAE12 /FEA=EST /CNT=20 /TID=Rn.6223.1 /TIER=Stack /STK=18 /UG=Rn.6223 /UG_TITLE=ESTs, Weakly similar to KPCN_HUMAN PROTEIN KINASE C, NU TYPE (NPKC-NU) (PROTEIN KINASE EPK2) (H.sapiens) AA799692 ubiquitin-like modifier activating enzyme 2 Uba2 308508 NM_001100579 0006464 // protein modification process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016925 // protein sumoylation // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008641 // small protein activating enzyme activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019948 // SUMO activating enzyme activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1371658_at BM389065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389065 /DB_XREF=gi:18189118 /DB_XREF=UI-R-DZ0-cko-j-19-0-UI.s1 /CLONE=UI-R-DZ0-cko-j-19-0-UI /FEA=EST /CNT=20 /TID=Rn.6292.1 /TIER=Stack /STK=18 /UG=Rn.6292 /UG_TITLE=ESTs, Highly similar to hypothetical protein COX4AL (M.musculus) BM389065 COX4 neighbor Cox4nb 361425 NM_001012165 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1371659_at AA891940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891940 /DB_XREF=gi:3018819 /DB_XREF=EST195743 /CLONE=RKIAI82 /FEA=EST /CNT=20 /TID=Rn.3508.1 /TIER=Stack /STK=18 /UG=Rn.3508 /UG_TITLE=ESTs, Highly similar to RHOC MOUSE TRANSFORMING PROTEIN RHOC (M.musculus) AA891940 ras homolog gene family, member C Rhoc 295342 NM_001106461 0001666 // response to hypoxia // inferred from expression pattern /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008064 // regulation of actin polymerization or depolymerization // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0030036 // actin cytoskeleton organization // traceable author statement /// 0030307 // positive regulation of cell growth // inferred from expression pattern /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0030335 // positive regulation of cell migration // inferred from expression pattern /// 0030838 // positive regulation of actin filament polymerization // inferred from mutant phenotype /// 0031098 // stress-activated protein kinase signaling cascade // inferred from mutant phenotype /// 0042493 // response to drug // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from sequence or structural similarity /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB cascade // inferred from mutant phenotype /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043280 // positive regulation of caspase activity // inferred from mutant phenotype /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0045471 // response to ethanol // inferred from expression pattern /// 0045665 // negative regulation of neuron differentiation // inferred from mutant phenotype /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0045727 // positive regulation of translation // inferred from expression pattern /// 0045785 // positive regulation of cell adhesion // inferred from expression pattern /// 0045907 // positive regulation of vasoconstriction // inferred from expression pattern /// 0048812 // neuron projection morphogenesis // inferred from expression pattern /// 0050773 // regulation of dendrite development // inferred from mutant phenotype /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051496 // positive regulation of stress fiber assembly // inferred from electronic annotation /// 0051927 // negative regulation of calcium ion transport via voltage-gated calcium channel activity // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // non-traceable author statement /// 0003924 // GTPase activity // traceable author statement /// 0004871 // signal transducer activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // traceable author statement /// 0017022 // myosin binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction 1371660_at AA945153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945153 /DB_XREF=gi:3105069 /DB_XREF=EST200652 /CLONE=RLIAH26 /FEA=EST /CNT=24 /TID=Rn.2168.1 /TIER=Stack /STK=18 /UG=Rn.2168 /UG_TITLE=ESTs, Weakly similar to CD4.7.p (Caenorhabditis elegans) (C.elegans) AA945153 zinc finger, HIT domain containing 1 LOC100360077 100360077 XM_002727957 1371661_at AI411153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411153 /DB_XREF=gi:4254657 /DB_XREF=EST239447 /CLONE=RKIET78 /FEA=EST /CNT=22 /TID=Rn.15018.1 /TIER=Stack /STK=18 /UG=Rn.15018 /UG_TITLE=ESTs, Moderately similar to YCD8_HUMAN HYPOTHETICAL PROTEIN CGI-138 (H.sapiens) AI411153 mitochondrial ribosomal protein S23 Mrps23 360594 NM_001108289 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 1371662_at AA892250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892250 /DB_XREF=gi:3019129 /DB_XREF=EST196053 /CLONE=RKIAO20 /FEA=EST /CNT=22 /TID=Rn.8160.1 /TIER=Stack /STK=18 /UG=Rn.8160 /UG_TITLE=ESTs, Highly similar to SYK_HUMAN LYSYL-TRNA SYNTHETASE (H.sapiens) AA892250 lysyl-tRNA synthetase Kars 292028 NM_001006967 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006430 // lysyl-tRNA aminoacylation // inferred from direct assay /// 0006430 // lysyl-tRNA aminoacylation // not recorded /// 0006430 // lysyl-tRNA aminoacylation // inferred from electronic annotation /// 0015966 // diadenosine tetraphosphate biosynthetic process // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // not recorded /// 0005829 // cytosol // not recorded /// 0017101 // aminoacyl-tRNA synthetase multienzyme complex // inferred from direct assay 0000049 // tRNA binding // inferred from direct assay /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004824 // lysine-tRNA ligase activity // inferred from direct assay /// 0004824 // lysine-tRNA ligase activity // not recorded /// 0004824 // lysine-tRNA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from direct assay /// 0016874 // ligase activity // inferred from electronic annotation 1371663_at AI232361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232361 /DB_XREF=gi:3816241 /DB_XREF=EST229049 /CLONE=RKICA69 /FEA=EST /CNT=21 /TID=Rn.17060.1 /TIER=Stack /STK=18 /UG=Rn.17060 /UG_TITLE=ESTs AI232361 major facilitator superfamily domain containing 5 Mfsd5 315329 NM_001126282 1371664_at BG673589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG673589 /DB_XREF=gi:13895688 /DB_XREF=DRN06G12 /CLONE=DRN06G12 /FEA=EST /CNT=20 /TID=Rn.75.1 /TIER=Stack /STK=18 /UG=Rn.75 /UG_TITLE=ESTs BG673589 paxillin Pxn 360820 NM_001012147 0000187 // activation of MAPK activity // not recorded /// 0006928 // cellular component movement // not recorded /// 0006936 // muscle contraction // not recorded /// 0007010 // cytoskeleton organization // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0030032 // lamellipodium assembly // not recorded /// 0034614 // cellular response to reactive oxygen species // not recorded /// 0048041 // focal adhesion assembly // not recorded /// 0048754 // branching morphogenesis of a tube // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005925 // focal adhesion // inferred from direct assay /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0031252 // cell leading edge // not recorded 0005178 // integrin binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008013 // beta-catenin binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017166 // vinculin binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051435 // BH4 domain binding // not recorded 1371665_at BG380496 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380496 /DB_XREF=gi:13304968 /DB_XREF=UI-R-CT0-btx-h-10-0-UI.s1 /CLONE=UI-R-CT0-btx-h-10-0-UI /FEA=EST /CNT=20 /TID=Rn.20043.1 /TIER=Stack /STK=18 /UG=Rn.20043 /UG_TITLE=ESTs, Moderately similar to JC6508 brahma related gene associated factor BAF60 b protein - rat (R.norvegicus) BG380496 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 Smarcd3 296732 NM_001011966 0003007 // heart morphogenesis // not recorded /// 0042692 // muscle cell differentiation // not recorded /// 0043393 // regulation of protein binding // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // not recorded /// 0071564 // npBAF complex // not recorded /// 0071565 // nBAF complex // not recorded 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0030528 // transcription regulator activity // not recorded /// 0035257 // nuclear hormone receptor binding // not recorded 1371666_at BM385852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385852 /DB_XREF=gi:18185905 /DB_XREF=UI-R-DM1-cke-o-14-0-UI.s1 /CLONE=UI-R-DM1-cke-o-14-0-UI /FEA=EST /CNT=20 /TID=Rn.771.1 /TIER=Stack /STK=18 /UG=Rn.771 /UG_TITLE=ESTs BM385852 1371667_at BG380728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380728 /DB_XREF=gi:13305200 /DB_XREF=UI-R-CT0-bua-g-04-0-UI.s1 /CLONE=UI-R-CT0-bua-g-04-0-UI /FEA=EST /CNT=19 /TID=Rn.18613.1 /TIER=Stack /STK=18 /UG=Rn.18613 /UG_TITLE=ESTs BG380728 family with sequence similarity 20, member B Fam20b 304885 NM_001107187 0005794 // Golgi apparatus // not recorded 0016773 // phosphotransferase activity, alcohol group as acceptor // not recorded 1371668_at BI285959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285959 /DB_XREF=gi:14940130 /DB_XREF=UI-R-CX0s-ccp-g-11-0-UI.s1 /CLONE=UI-R-CX0s-ccp-g-11-0-UI /FEA=EST /CNT=19 /TID=Rn.8121.1 /TIER=Stack /STK=18 /UG=Rn.8121 /UG_TITLE=ESTs, Highly similar to RXRA RAT RETINOIC ACID RECEPTOR RXR-ALPHA (R.norvegicus) BI285959 Retinoid X receptor alpha Rxra 25271 NM_012805 0001889 // liver development // inferred from expression pattern /// 0001890 // placenta development // inferred from expression pattern /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from expression pattern /// 0007165 // signal transduction // not recorded /// 0007494 // midgut development // inferred from expression pattern /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007565 // female pregnancy // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0010269 // response to selenium ion // inferred from expression pattern /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0031103 // axon regeneration // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032526 // response to retinoic acid // not recorded /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0033189 // response to vitamin A // inferred from expression pattern /// 0033280 // response to vitamin D // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from expression pattern /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048384 // retinoic acid receptor signaling pathway // inferred from electronic annotation /// 0048384 // retinoic acid receptor signaling pathway // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from mutant phenotype /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0055012 // ventricular cardiac muscle cell differentiation // inferred from electronic annotation /// 0055012 // ventricular cardiac muscle cell differentiation // not recorded /// 0060038 // cardiac muscle cell proliferation // inferred from electronic annotation /// 0060038 // cardiac muscle cell proliferation // not recorded /// 0060528 // secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development // inferred from electronic annotation /// 0060528 // secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development // not recorded /// 0060687 // regulation of branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0060687 // regulation of branching involved in prostate gland morphogenesis // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003706 // ligand-regulated transcription factor activity // inferred from electronic annotation /// 0003706 // ligand-regulated transcription factor activity // not recorded /// 0003707 // steroid hormone receptor activity // traceable author statement /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // not recorded /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0004886 // retinoid-X receptor activity // inferred from electronic annotation /// 0004886 // retinoid-X receptor activity // not recorded /// 0005496 // steroid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0042809 // vitamin D receptor binding // inferred from electronic annotation /// 0042809 // vitamin D receptor binding // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0070644 // vitamin D response element binding // inferred from electronic annotation /// 0070644 // vitamin D response element binding // not recorded 1371669_at BF401626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401626 /DB_XREF=gi:11389601 /DB_XREF=UI-R-CA0-bgm-g-08-0-UI.s1 /CLONE=UI-R-CA0-bgm-g-08-0-UI /FEA=EST /CNT=19 /TID=Rn.35093.1 /TIER=Stack /STK=18 /UG=Rn.35093 /UG_TITLE=ESTs, Highly similar to PR16_HUMAN PRE-MRNA SPLICING FACTOR ATP-DEPENDENT RNA HELICASE PRP16 (H.sapiens) BF401626 DEAH (Asp-Glu-Ala-His) box polypeptide 38 Dhx38 292007 NM_001106185 0000398 // nuclear mRNA splicing, via spliceosome // not recorded /// 0008380 // RNA splicing // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1371670_at BF407149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407149 /DB_XREF=gi:11395124 /DB_XREF=UI-R-BJ2-bqw-c-04-0-UI.s1 /CLONE=UI-R-BJ2-bqw-c-04-0-UI /FEA=EST /CNT=19 /TID=Rn.28481.1 /TIER=Stack /STK=18 /UG=Rn.28481 /UG_TITLE=ESTs, Highly similar to RR41_HUMAN Exosome complex exonuclease RRP41 (Ribosomal RNA processing protein 41) (H.sapiens) BF407149 exosome component 4 Exosc4 300045 NM_001134860 0006396 // RNA processing // inferred from electronic annotation /// 0071044 // histone mRNA catabolic process // not recorded 0000175 // 3'-5'-exoribonuclease activity // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371671_at AI228513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228513 /DB_XREF=gi:3812400 /DB_XREF=EST225208 /CLONE=RBRCV85 /FEA=EST /CNT=19 /TID=Rn.15338.1 /TIER=Stack /STK=18 /UG=Rn.15338 /UG_TITLE=ESTs AI228513 G protein-coupled receptor, family C, group 5, member B Gprc5b 293546 NM_001106304 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1371672_at AI406275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406275 /DB_XREF=gi:4249779 /DB_XREF=EST234561 /CLONE=RBRDL77 /FEA=EST /CNT=19 /TID=Rn.12512.1 /TIER=Stack /STK=18 /UG=Rn.12512 /UG_TITLE=ESTs AI406275 chromobox homolog 7 Cbx7 362962 NM_199117 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003682 // chromatin binding // inferred from electronic annotation 1371673_at AI413005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI413005 /DB_XREF=gi:4256509 /DB_XREF=EST241306 /CLONE=RBREC53 /FEA=EST /CNT=19 /TID=Rn.1986.1 /TIER=Stack /STK=18 /UG=Rn.1986 /UG_TITLE=ESTs, Highly similar to YL-1 PROTEIN (M.musculus) AI413005 vacuolar protein sorting 72 homolog (S. cerevisiae) Vps72 310661 NM_001107695 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1371674_at AA894104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894104 /DB_XREF=gi:3020983 /DB_XREF=EST197907 /CLONE=RSPAQ82 /FEA=EST /CNT=19 /TID=Rn.3260.1 /TIER=Stack /STK=18 /UG=Rn.3260 /UG_TITLE=ESTs, Weakly similar to T20253 hypothetical protein F53E4.1 - Caenorhabditis elegans (C.elegans) AA894104 kelch domain containing 3 Klhdc3 363192 NM_001012203 0007126 // meiosis // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from electronic annotation /// 0000790 // nuclear chromatin // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003682 // chromatin binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371675_at AA893193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893193 /DB_XREF=gi:4132259 /DB_XREF=EST196996 /CLONE=RKIBD37 /FEA=EST /CNT=19 /TID=Rn.1779.1 /TIER=Stack /STK=18 /UG=Rn.1779 /UG_TITLE=ESTs AA893193 Chromodomain helicase DNA binding protein 2 Chd2 308738 NM_001107523 0006333 // chromatin assembly or disassembly // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1371676_at BG380464 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380464 /DB_XREF=gi:13304936 /DB_XREF=UI-R-CT0-btx-e-10-0-UI.s1 /CLONE=UI-R-CT0-btx-e-10-0-UI /FEA=EST /CNT=20 /TID=Rn.20650.1 /TIER=Stack /STK=18 /UG=Rn.20650 /UG_TITLE=ESTs BG380464 LAG1 homolog, ceramide synthase 5 Lass5 366984 NM_001108993 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0030148 // sphingolipid biosynthetic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0046513 // ceramide biosynthetic process // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0050291 // sphingosine N-acyltransferase activity // not recorded 1371677_at BE113200 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113200 /DB_XREF=gi:8505305 /DB_XREF=UI-R-BJ1-awc-f-12-0-UI.s1 /CLONE=UI-R-BJ1-awc-f-12-0-UI /FEA=EST /CNT=19 /TID=Rn.3817.1 /TIER=Stack /STK=18 /UG=Rn.3817 /UG_TITLE=ESTs, Weakly similar to I52196 homeobox transcription factor Hox 1.11 - rat (R.norvegicus) BE113200 serine peptidase inhibitor, Kazal type 8 Spink8 301016 NM_001106860 1371678_at BM391872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391872 /DB_XREF=gi:18191925 /DB_XREF=UI-R-DO1-cmk-l-16-0-UI.s1 /CLONE=UI-R-DO1-cmk-l-16-0-UI /FEA=EST /CNT=18 /TID=Rn.6516.1 /TIER=Stack /STK=18 /UG=Rn.6516 /UG_TITLE=ESTs, Weakly similar to YIA8_YEAST HYPOTHETICAL 11.0 KD PROTEIN IN FAA3-MAS3 INTERGENIC REGION (S.cerevisiae) BM391872 ubiquitin related modifier 1 homolog (S. cerevisiae) Urm1 311840 NM_001137562 0002098 // tRNA wobble uridine modification // not recorded /// 0008033 // tRNA processing // inferred from electronic annotation /// 0034227 // tRNA thio-modification // inferred from electronic annotation /// 0034227 // tRNA thio-modification // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0016783 // sulfurtransferase activity // not recorded 1371679_at BE113393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113393 /DB_XREF=gi:8505498 /DB_XREF=UI-R-BJ1-awe-g-12-0-UI.s1 /CLONE=UI-R-BJ1-awe-g-12-0-UI /FEA=EST /CNT=18 /TID=Rn.7078.1 /TIER=Stack /STK=18 /UG=Rn.7078 /UG_TITLE=ESTs BE113393 1371680_at BI303631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303631 /DB_XREF=gi:14979911 /DB_XREF=UI-R-DQ0-cja-j-02-0-UI.s1 /CLONE=UI-R-DQ0-cja-j-02-0-UI /FEA=EST /CNT=18 /TID=Rn.36100.1 /TIER=Stack /STK=18 /UG=Rn.36100 /UG_TITLE=ESTs, Weakly similar to ganglioside expression factor 2 (Rattus norvegicus) (R.norvegicus) BI303631 GABA(A) receptor-associated protein like 1 Gabarapl1 689161 NM_001044294 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005776 // autophagic vacuole // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1371681_at AI145556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145556 /DB_XREF=gi:3667355 /DB_XREF=UI-R-BT0-qi-b-03-0-UI.s1 /CLONE=UI-R-BT0-qi-b-03-0-UI /FEA=EST /CNT=18 /TID=Rn.22195.1 /TIER=Stack /STK=18 /UG=Rn.22195 /UG_TITLE=ESTs AI145556 TOX high mobility group box family member 4 Tox4 286990 NM_173324 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0003677 // DNA binding // inferred from electronic annotation 1371682_at AI177372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177372 /DB_XREF=gi:3728010 /DB_XREF=EST220992 /CLONE=RPLBY30 /FEA=EST /CNT=18 /TID=Rn.3135.1 /TIER=Stack /STK=18 /UG=Rn.3135 /UG_TITLE=ESTs, Moderately similar to MPL3 RAT MICROTUBULE-ASSOCIATED PROTEINS 1A1B LIGHT CHAIN 3 (R.norvegicus) AI177372 microtubule-associated protein 1 light chain 3 alpha Map1lc3a 362245 NM_199500 0000045 // autophagic vacuole assembly // inferred from direct assay /// 0006914 // autophagy // inferred from direct assay /// 0006914 // autophagy // inferred from expression pattern /// 0006914 // autophagy // inferred from electronic annotation 0000421 // autophagic vacuole membrane // inferred from direct assay /// 0000421 // autophagic vacuole membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005776 // autophagic vacuole // inferred from direct assay /// 0005776 // autophagic vacuole // not recorded /// 0005829 // cytosol // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from direct assay /// 0031090 // organelle membrane // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005543 // phospholipid binding // not recorded /// 0008429 // phosphatidylethanolamine binding // not recorded 1371683_at AI103250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103250 /DB_XREF=gi:3707813 /DB_XREF=EST212539 /CLONE=REMBZ06 /FEA=EST /CNT=18 /TID=Rn.12031.1 /TIER=Stack /STK=18 /UG=Rn.12031 /UG_TITLE=ESTs, Highly similar to LSM4_MOUSE U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM4 (M.musculus) AI103250 LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) Lsm4 290647 NM_001106073 0005515 // protein binding // not recorded 1371684_at AA799330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799330 /DB_XREF=gi:2862285 /DB_XREF=EST188827 /CLONE=RHEAA35 /FEA=EST /CNT=18 /TID=Rn.3842.1 /TIER=Stack /STK=18 /UG=Rn.3842 /UG_TITLE=ESTs, Weakly similar to T47122 cell division protein pelota (imported) - fruit fly (Drosophila melanogaster) (D.melanogaster) AA799330 pelota homolog (Drosophila) Pelo 294754 NM_001007634 0006412 // translation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0051276 // chromosome organization // inferred from electronic annotation /// 0051276 // chromosome organization // not recorded /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371685_at AI178043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178043 /DB_XREF=gi:4135044 /DB_XREF=EST221702 /CLONE=RPLCK40 /FEA=EST /CNT=18 /TID=Rn.1688.1 /TIER=Stack /STK=18 /UG=Rn.1688 /UG_TITLE=ESTs AI178043 kelch repeat and BTB (POZ) domain containing 2 Kbtbd2 312372 NM_001107861 0005515 // protein binding // inferred from electronic annotation 1371686_at AA946205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946205 /DB_XREF=gi:4132713 /DB_XREF=EST201704 /CLONE=RLUBC35 /FEA=EST /CNT=67 /TID=Rn.1762.1 /TIER=Stack /STK=8 /UG=Rn.1762 /UG_TITLE=ESTs, Moderately similar to CALNEXIN PRECURSOR (R.norvegicus) AA946205 calnexin Canx 29144 NM_172008 0006457 // protein folding // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005840 // ribosome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0030424 // axon // inferred from direct assay /// 0032839 // dendrite cytoplasm // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1371687_at BI297860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297860 /DB_XREF=gi:14974140 /DB_XREF=UI-R-CV2-chb-e-05-0-UI.s1 /CLONE=UI-R-CV2-chb-e-05-0-UI /FEA=EST /CNT=67 /TID=Rn.1762.1 /TIER=Stack /STK=6 /UG=Rn.1762 /UG_TITLE=ESTs, Moderately similar to CALNEXIN PRECURSOR (R.norvegicus) BI297860 calnexin Canx 29144 NM_172008 0006457 // protein folding // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005840 // ribosome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0030424 // axon // inferred from direct assay /// 0032839 // dendrite cytoplasm // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1371688_at AI178493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178493 /DB_XREF=gi:3729131 /DB_XREF=EST222167 /CLONE=RPLCR73 /FEA=EST /CNT=30 /TID=Rn.3476.1 /TIER=Stack /STK=17 /UG=Rn.3476 /UG_TITLE=ESTs, Highly similar to S30034 translocating chain-associating membrane protein (H.sapiens) AI178493 translocation associated membrane protein 1 Tram1 312903 NM_001007701 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1371689_at BE107334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107334 /DB_XREF=gi:8499439 /DB_XREF=UI-R-BS1-ays-e-09-0-UI.s1 /CLONE=UI-R-BS1-ays-e-09-0-UI /FEA=EST /CNT=37 /TID=Rn.3283.1 /TIER=Stack /STK=17 /UG=Rn.3283 /UG_TITLE=ESTs BE107334 1371690_at AA849825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849825 /DB_XREF=gi:2937365 /DB_XREF=EST192592 /CLONE=RMUAJ44 /FEA=EST /CNT=27 /TID=Rn.3065.2 /TIER=Stack /STK=17 /UG=Rn.3065 /LL=64187 /UG_GENE=Arl1 /UG_TITLE=ADP-ribosylation factor-like 1 AA849825 ADP-ribosylation factor-like 1 Arl1 64187 NM_022385 0006412 // translation // inferred from electronic annotation /// 0007030 // Golgi organization // inferred from mutant phenotype /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0048193 // Golgi vesicle transport // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371691_at BI282993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282993 /DB_XREF=gi:14934308 /DB_XREF=UI-R-CW0s-ccf-g-04-0-UI.s1 /CLONE=UI-R-CW0s-ccf-g-04-0-UI /FEA=EST /CNT=25 /TID=Rn.6725.1 /TIER=Stack /STK=17 /UG=Rn.6725 /UG_TITLE=ESTs, Weakly similar to tazarotene-induced gene 2 (H.sapiens) BI282993 retinoic acid receptor responder (tazarotene induced) 2 Rarres2 297073 NM_001013427 0001523 // retinoid metabolic process // not recorded /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded 0004872 // receptor activity // inferred from electronic annotation 1371692_at AI009661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009661 /DB_XREF=gi:4133087 /DB_XREF=EST204112 /CLONE=RLUBG91 /FEA=EST /CNT=37 /TID=Rn.3180.1 /TIER=Stack /STK=17 /UG=Rn.3180 /UG_TITLE=ESTs, Moderately similar to AF1Q MOUSE PROTEIN AF1Q (M.musculus) AI009661 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11 Mllt11 295264 NM_001013912 1371693_at AA849757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849757 /DB_XREF=gi:4131765 /DB_XREF=EST192524 /CLONE=RMUAI51 /FEA=EST /CNT=24 /TID=Rn.3553.1 /TIER=Stack /STK=17 /UG=Rn.3553 /UG_TITLE=ESTs, Highly similar to C143_HUMAN PROTEIN C14ORF3 (PROTEIN HSPC322) (H.sapiens) AA849757 similar to AHA1, activator of heat shock 90kDa protein ATPase homolog 1 LOC681996 681996 NM_001115034 0006950 // response to stress // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0001671 // ATPase activator activity // inferred from electronic annotation /// 0051087 // chaperone binding // inferred from electronic annotation 1371694_at AI317805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI317805 /DB_XREF=gi:4033072 /DB_XREF=EST234476 /CLONE=RPPAA07 /FEA=EST /CNT=41 /TID=Rn.2889.1 /TIER=Stack /STK=17 /UG=Rn.2889 /UG_TITLE=ESTs, Moderately similar to S15785 heat-stable antigen-related hypothetical protein HSA-C - mouse (M.musculus) AI317805 dihydropyrimidinase-like 2 Dpysl2 25416 NM_001105717 0001975 // response to amphetamine // inferred from expression pattern /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0014049 // positive regulation of glutamate secretion // inferred from direct assay /// 0021510 // spinal cord development // inferred from expression pattern /// 0021772 // olfactory bulb development // inferred from expression pattern /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030516 // regulation of axon extension // non-traceable author statement /// 0042220 // response to cocaine // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0045664 // regulation of neuron differentiation // inferred from mutant phenotype /// 0048489 // synaptic vesicle transport // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded /// 0019717 // synaptosome // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0030425 // dendrite // inferred from direct assay /// 0030425 // dendrite // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0030426 // growth cone // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043025 // neuronal cell body // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043195 // terminal button // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation 1371695_at AI230732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230732 /DB_XREF=gi:3814619 /DB_XREF=EST227427 /CLONE=REMDA55 /FEA=EST /CNT=25 /TID=Rn.7928.1 /TIER=Stack /STK=17 /UG=Rn.7928 /UG_TITLE=ESTs, Highly similar to TPR_HUMAN NUCLEOPROTEIN TPR (H.sapiens) AI230732 translocated promoter region Tpr 304862 NM_001107185 0006412 // translation // inferred from electronic annotation /// 0006434 // seryl-tRNA aminoacylation // inferred from electronic annotation /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0007094 // mitotic cell cycle spindle assembly checkpoint // not recorded 0000776 // kinetochore // not recorded /// 0005635 // nuclear envelope // not recorded /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005643 // nuclear pore // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004828 // serine-tRNA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1371696_at AI412938 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412938 /DB_XREF=gi:4256442 /DB_XREF=EST241238 /CLONE=RKIEG66 /FEA=EST /CNT=24 /TID=Rn.1677.1 /TIER=Stack /STK=17 /UG=Rn.1677 /UG_TITLE=ESTs AI412938 G protein-coupled receptor 56 Gpr56 260326 NM_152242 0007155 // cell adhesion // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1371697_at BI278288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278288 /DB_XREF=gi:14924986 /DB_XREF=UI-R-CY0-bxr-f-11-0-UI.s1 /CLONE=UI-R-CY0-bxr-f-11-0-UI /FEA=EST /CNT=24 /TID=Rn.19196.1 /TIER=Stack /STK=17 /UG=Rn.19196 /UG_TITLE=ESTs BI278288 patatin-like phospholipase domain containing 2 Pnpla2 361676 NM_001108509 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010891 // negative regulation of sequestering of triglyceride // not recorded /// 0010891 // negative regulation of sequestering of triglyceride // inferred from sequence or structural similarity /// 0010891 // negative regulation of sequestering of triglyceride // inferred from electronic annotation /// 0010898 // positive regulation of triglyceride catabolic process // not recorded /// 0010898 // positive regulation of triglyceride catabolic process // inferred from sequence or structural similarity /// 0010898 // positive regulation of triglyceride catabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0019433 // triglyceride catabolic process // not recorded /// 0019433 // triglyceride catabolic process // inferred from electronic annotation 0005811 // lipid particle // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004806 // triglyceride lipase activity // not recorded /// 0004806 // triglyceride lipase activity // inferred from sequence or structural similarity /// 0004806 // triglyceride lipase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1371698_at BF282614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282614 /DB_XREF=gi:11213684 /DB_XREF=EST447205 /CLONE=RGIDQ78 /FEA=EST /CNT=26 /TID=Rn.3258.1 /TIER=Stack /STK=17 /UG=Rn.3258 /UG_TITLE=ESTs, Weakly similar to EF2 RAT ELONGATION FACTOR 2 (R.norvegicus) BF282614 elongation factor Tu GTP binding domain containing 2 Eftud2 287739 XM_001081526 /// XM_213492 0008380 // RNA splicing // not recorded 0005634 // nucleus // not recorded /// 0015030 // Cajal body // inferred from electronic annotation /// 0015030 // Cajal body // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1371699_at BI295739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295739 /DB_XREF=gi:14959488 /DB_XREF=UI-R-DK0-cfa-a-08-0-UI.s1 /CLONE=UI-R-DK0-cfa-a-08-0-UI /FEA=EST /CNT=23 /TID=Rn.8461.1 /TIER=Stack /STK=17 /UG=Rn.8461 /UG_TITLE=ESTs BI295739 1371700_at AI177059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177059 /DB_XREF=gi:3727697 /DB_XREF=EST220666 /CLONE=ROVCA31 /FEA=EST /CNT=22 /TID=Rn.12328.1 /TIER=Stack /STK=17 /UG=Rn.12328 /UG_TITLE=ESTs AI177059 microfibrillar-associated protein 4 Mfap4 287382 NM_001034124 0007165 // signal transduction // inferred from electronic annotation 0031012 // extracellular matrix // not recorded 0005102 // receptor binding // inferred from electronic annotation 1371701_at BG666921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666921 /DB_XREF=gi:13888843 /DB_XREF=DRACQF04 /CLONE=DRACQF04 /FEA=EST /CNT=24 /TID=Rn.22045.1 /TIER=Stack /STK=17 /UG=Rn.22045 /UG_TITLE=ESTs, Moderately similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 (22kD, B22) (Homo sapiens) (H.sapiens) BG666921 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 Ndufb9 299954 NM_001127294 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005747 // mitochondrial respiratory chain complex I // not recorded 1371702_at AI234044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234044 /DB_XREF=gi:4135949 /DB_XREF=EST230732 /CLONE=RLUCU47 /FEA=EST /CNT=23 /TID=Rn.13685.1 /TIER=Stack /STK=17 /UG=Rn.13685 /UG_TITLE=ESTs AI234044 tetraspanin 7 Tspan7 363447 NM_001108815 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1371703_at AI407114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407114 /DB_XREF=gi:4250618 /DB_XREF=EST235402 /CLONE=ROVDT66 /FEA=EST /CNT=23 /TID=Rn.29513.1 /TIER=Stack /STK=17 /UG=Rn.29513 /UG_TITLE=ESTs AI407114 AHNAK nucleoprotein Ahnak 191572 NM_001191951 /// XM_001078032 /// XM_574618 0005515 // protein binding // inferred from electronic annotation 1371704_at BI274402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274402 /DB_XREF=gi:14885281 /DB_XREF=UI-R-CW0-bwi-e-05-0-UI.s1 /CLONE=UI-R-CW0-bwi-e-05-0-UI /FEA=EST /CNT=22 /TID=Rn.2319.1 /TIER=Stack /STK=17 /UG=Rn.2319 /UG_TITLE=ESTs, Weakly similar to DDX4 RAT DEAD BOX PROTEIN 4 (R.norvegicus) BI274402 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 Ddx23 300208 NM_001106793 0008380 // RNA splicing // not recorded 0005682 // U5 snRNP // inferred from electronic annotation /// 0005682 // U5 snRNP // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1371705_at BI285508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285508 /DB_XREF=gi:14939222 /DB_XREF=UI-R-DD0-caa-h-12-0-UI.s1 /CLONE=UI-R-DD0-caa-h-12-0-UI /FEA=EST /CNT=22 /TID=Rn.3673.1 /TIER=Stack /STK=17 /UG=Rn.3673 /UG_TITLE=ESTs BI285508 1371706_at AI101371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101371 /DB_XREF=gi:3706281 /DB_XREF=EST210660 /CLONE=RBRBM70 /FEA=EST /CNT=21 /TID=Rn.54139.1 /TIER=Stack /STK=17 /UG=Rn.54139 /UG_TITLE=ESTs AI101371 serologically defined colon cancer antigen 3 Sdccag3 306322 NM_001013135 1371707_at AI235431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235431 /DB_XREF=gi:3828937 /DB_XREF=EST231993 /CLONE=ROVCR72 /FEA=EST /CNT=21 /TID=Rn.8631.1 /TIER=Stack /STK=17 /UG=Rn.8631 /UG_TITLE=ESTs AI235431 transportin 2 (importin 3, karyopherin beta 2b) Tnpo2 304670 NM_001107166 0006886 // intracellular protein transport // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation 1371708_at BI279097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279097 /DB_XREF=gi:14926584 /DB_XREF=UI-R-DA0-byj-b-12-0-UI.s1 /CLONE=UI-R-DA0-byj-b-12-0-UI /FEA=EST /CNT=21 /TID=Rn.43383.1 /TIER=Stack /STK=17 /UG=Rn.43383 /UG_TITLE=ESTs, Moderately similar to CAH6 MOUSE CARBONIC ANHYDRASE VI PRECURSOR (M.musculus) BI279097 carbonic anhydrase 6 Car6 298657 NM_001134841 0006730 // one-carbon metabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0004089 // carbonate dehydratase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1371709_at BI279024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279024 /DB_XREF=gi:14926442 /DB_XREF=UI-R-CZ0-byi-c-02-0-UI.s1 /CLONE=UI-R-CZ0-byi-c-02-0-UI /FEA=EST /CNT=24 /TID=Rn.6950.1 /TIER=Stack /STK=17 /UG=Rn.6950 /UG_TITLE=ESTs, Highly similar to RM03 RAT MITOCHONDRIAL 60S RIBOSOMAL PROTEIN L3 (R.norvegicus) BI279024 mitochondrial ribosomal protein L3 Mrpl3 300974 NM_001106852 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005762 // mitochondrial large ribosomal subunit // not recorded /// 0005762 // mitochondrial large ribosomal subunit // inferred from sequence or structural similarity /// 0005762 // mitochondrial large ribosomal subunit // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1371710_at BM391283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391283 /DB_XREF=gi:18191336 /DB_XREF=UI-R-DY0-ckq-d-11-0-UI.s1 /CLONE=UI-R-DY0-ckq-d-11-0-UI /FEA=EST /CNT=24 /TID=Rn.7630.1 /TIER=Stack /STK=17 /UG=Rn.7630 /UG_TITLE=ESTs, Highly similar to PM5P_HUMAN PROTEIN PM5 PRECURSOR (H.sapiens) BM391283 ethanolamine kinase 1 Etnk1 312828 NM_001107894 0006646 // phosphatidylethanolamine biosynthetic process // not recorded 0004305 // ethanolamine kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1371711_at AA800689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800689 /DB_XREF=gi:2863644 /DB_XREF=EST190186 /CLONE=RLUAK32 /FEA=EST /CNT=23 /TID=Rn.1982.1 /TIER=Stack /STK=17 /UG=Rn.1982 /UG_TITLE=ESTs AA800689 receptor accessory protein 5 Reep5 364838 NM_001108888 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371712_at AI176503 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176503 /DB_XREF=gi:3727141 /DB_XREF=EST220088 /CLONE=ROVBS71 /FEA=EST /CNT=23 /TID=Rn.37193.1 /TIER=Stack /STK=17 /UG=Rn.37193 /UG_TITLE=ESTs, Weakly similar to LSM4_MOUSE U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM4 (M.musculus) AI176503 LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) Lsm2 684148 NM_001004073 /// NM_001165922 1371713_at BF408884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408884 /DB_XREF=gi:11396859 /DB_XREF=UI-R-BS2-bet-e-04-0-UI.s1 /CLONE=UI-R-BS2-bet-e-04-0-UI /FEA=EST /CNT=20 /TID=Rn.3105.1 /TIER=Stack /STK=17 /UG=Rn.3105 /UG_TITLE=ESTs BF408884 c-abl oncogene 1, receptor tyrosine kinase Abl1 311860 NM_001100850 /// XM_001067860 /// XM_001079831 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0051353 // positive regulation of oxidoreductase activity // not recorded /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0030145 // manganese ion binding // not recorded /// 0070064 // proline-rich region binding // not recorded 1371714_at BG378760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378760 /DB_XREF=gi:13303232 /DB_XREF=UI-R-CV1-bvs-e-08-0-UI.s1 /CLONE=UI-R-CV1-bvs-e-08-0-UI /FEA=EST /CNT=20 /TID=Rn.2688.1 /TIER=Stack /STK=17 /UG=Rn.2688 /UG_TITLE=ESTs BG378760 SFRS protein kinase 1 Srpk1 361811 NM_001025726 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007059 // chromosome segregation // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0050684 // regulation of mRNA processing // inferred from electronic annotation /// 0050684 // regulation of mRNA processing // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1371715_at AI012212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012212 /DB_XREF=gi:3226044 /DB_XREF=EST206663 /CLONE=RPLAU05 /FEA=EST /CNT=20 /TID=Rn.2644.1 /TIER=Stack /STK=17 /UG=Rn.2644 /UG_TITLE=ESTs, Weakly similar to T15628 hypothetical protein C25H3.9 - Caenorhabditis elegans (C.elegans) AI012212 LOC500651 MGC112883 500651 NM_001047743 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0017059 // serine C-palmitoyltransferase complex // not recorded /// 0017059 // serine C-palmitoyltransferase complex // inferred from sequence or structural similarity /// 0017059 // serine C-palmitoyltransferase complex // inferred from electronic annotation 0004758 // serine C-palmitoyltransferase activity // not recorded /// 0004758 // serine C-palmitoyltransferase activity // inferred from sequence or structural similarity /// 0004758 // serine C-palmitoyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371716_at BE107610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107610 /DB_XREF=gi:8499715 /DB_XREF=UI-R-CA0-awv-f-10-0-UI.s1 /CLONE=UI-R-CA0-awv-f-10-0-UI /FEA=EST /CNT=20 /TID=Rn.20004.1 /TIER=Stack /STK=17 /UG=Rn.20004 /UG_TITLE=ESTs BE107610 similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin c2 LOC685179 685179 XM_001055673 /// XM_001055738 /// XM_001055795 /// XM_002726856 /// XM_002729767 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006338 // chromatin remodeling // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0000785 // chromatin // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0016514 // SWI/SNF complex // not recorded /// 0017053 // transcriptional repressor complex // not recorded /// 0071564 // npBAF complex // not recorded /// 0071565 // nBAF complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371717_at AA943135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943135 /DB_XREF=gi:3103051 /DB_XREF=EST198634 /CLONE=RBRAF48 /FEA=EST /CNT=23 /TID=Rn.19981.1 /TIER=Stack /STK=17 /UG=Rn.19981 /UG_TITLE=ESTs, Weakly similar to T46498 hypothetical protein DKFZp434P237.1 (H.sapiens) AA943135 mitofusin 1 Mfn1 192647 NM_138976 0008053 // mitochondrial fusion // inferred from electronic annotation /// 0008053 // mitochondrial fusion // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1371718_at BI283124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283124 /DB_XREF=gi:14934558 /DB_XREF=UI-R-CU0s-cca-c-07-0-UI.s1 /CLONE=UI-R-CU0s-cca-c-07-0-UI /FEA=EST /CNT=22 /TID=Rn.29904.1 /TIER=Stack /STK=17 /UG=Rn.29904 /UG_TITLE=ESTs BI283124 steroid receptor RNA activator 1 Sra1 252891 NM_183329 0006350 // transcription // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from sequence or structural similarity /// 0006915 // apoptosis // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from sequence or structural similarity /// 0008283 // cell proliferation // inferred from electronic annotation /// 0010469 // regulation of receptor activity // not recorded /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0031252 // cell leading edge // inferred from electronic annotation /// 0031252 // cell leading edge // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0003713 // transcription coactivator activity // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0010861 // thyroid hormone receptor activator activity // inferred from electronic annotation /// 0010861 // thyroid hormone receptor activator activity // not recorded /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from electronic annotation /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded 1371719_at AA946361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946361 /DB_XREF=gi:3106277 /DB_XREF=EST201860 /CLONE=RLUBH22 /FEA=EST /CNT=21 /TID=Rn.37842.1 /TIER=Stack /STK=17 /UG=Rn.37842 /UG_TITLE=ESTs, Weakly similar to CBP MOUSE CREB-BINDING PROTEIN (M.musculus) AA946361 bromodomain containing 2 Brd2 294276 NM_212495 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 1371720_at AI599839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599839 /DB_XREF=gi:4608887 /DB_XREF=EST251542 /CLONE=REMEM05 /FEA=EST /CNT=21 /TID=Rn.2913.1 /TIER=Stack /STK=17 /UG=Rn.2913 /UG_TITLE=ESTs, Weakly similar to RL20_ECOLI 50S ribosomal protein L20 (E.coli) AI599839 mitochondrial ribosomal protein L20 Mrpl20 680747 NM_001109428 0006412 // translation // inferred from electronic annotation /// 0006412 // translation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005762 // mitochondrial large ribosomal subunit // inferred from electronic annotation /// 0005762 // mitochondrial large ribosomal subunit // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // not recorded /// 0019843 // rRNA binding // inferred from electronic annotation 1371721_at BI281103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281103 /DB_XREF=gi:14930508 /DB_XREF=UI-R-DD0-bzr-c-07-0-UI.s1 /CLONE=UI-R-DD0-bzr-c-07-0-UI /FEA=EST /CNT=20 /TID=Rn.4241.3 /TIER=Stack /STK=17 /UG=Rn.4241 /LL=64157 /UG_GENE=Ddah1 /UG_TITLE=NG,NG dimethylarginine dimethylaminohydrolase BI281103 Hypothetical LOC500532 LOC500532 500532 XR_006877 /// XR_008784 1371722_at BI274676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274676 /DB_XREF=gi:14885814 /DB_XREF=UI-R-CX0-bws-f-09-0-UI.s1 /CLONE=UI-R-CX0-bws-f-09-0-UI /FEA=EST /CNT=20 /TID=Rn.4204.1 /TIER=Stack /STK=17 /UG=Rn.4204 /UG_TITLE=ESTs BI274676 ribosomal RNA processing 7 homolog A (S. cerevisiae) Rrp7a 362967 NM_001130568 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation 1371723_at BE110635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110635 /DB_XREF=gi:8502740 /DB_XREF=UI-R-BJ1-avu-c-05-0-UI.s1 /CLONE=UI-R-BJ1-avu-c-05-0-UI /FEA=EST /CNT=19 /TID=Rn.6455.1 /TIER=Stack /STK=17 /UG=Rn.6455 /UG_TITLE=ESTs BE110635 Ras-related GTP binding C Rragc 298514 NM_001048184 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0019003 // GDP binding // inferred from electronic annotation /// 0019003 // GDP binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1371724_at AA799631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799631 /DB_XREF=gi:4131420 /DB_XREF=EST189128 /CLONE=RHEAD38 /FEA=EST /CNT=19 /TID=Rn.11496.1 /TIER=Stack /STK=17 /UG=Rn.11496 /UG_TITLE=ESTs, Highly similar to ORN_HUMAN OLIGORIBONUCLEASE, MITOCHONDRIAL PRECURSOR (SMALL FRAGMENT NUCLEASE) (CGI-114) (H.sapiens) AA799631 REX2, RNA exonuclease 2 homolog (S. cerevisiae) Rexo2 300689 NM_001008326 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0008408 // 3'-5' exonuclease activity // inferred from electronic annotation /// 0008408 // 3'-5' exonuclease activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1371725_at BM392410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392410 /DB_XREF=gi:18192463 /DB_XREF=UI-R-EB1-clf-k-08-0-UI.s1 /CLONE=UI-R-EB1-clf-k-08-0-UI /FEA=EST /CNT=19 /TID=Rn.7812.1 /TIER=Stack /STK=17 /UG=Rn.7812 /UG_TITLE=ESTs BM392410 Myosin, heavy chain 9, non-muscle Myh9 25745 NM_013194 0000212 // meiotic spindle organization // inferred from electronic annotation /// 0000212 // meiotic spindle organization // not recorded /// 0000904 // cell morphogenesis involved in differentiation // inferred from electronic annotation /// 0000904 // cell morphogenesis involved in differentiation // not recorded /// 0000910 // cytokinesis // not recorded /// 0000910 // cytokinesis // inferred from sequence or structural similarity /// 0000910 // cytokinesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from sequence or structural similarity /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001768 // establishment of T cell polarity // inferred from electronic annotation /// 0001768 // establishment of T cell polarity // not recorded /// 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0006509 // membrane protein ectodomain proteolysis // inferred from sequence or structural similarity /// 0006509 // membrane protein ectodomain proteolysis // inferred from electronic annotation /// 0006928 // cellular component movement // inferred from electronic annotation /// 0006928 // cellular component movement // not recorded /// 0007132 // meiotic metaphase I // inferred from electronic annotation /// 0007132 // meiotic metaphase I // not recorded /// 0007155 // cell adhesion // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007520 // myoblast fusion // inferred from electronic annotation /// 0007520 // myoblast fusion // not recorded /// 0008360 // regulation of cell shape // not recorded /// 0008360 // regulation of cell shape // inferred from sequence or structural similarity /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0015031 // protein transport // not recorded /// 0015031 // protein transport // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0030048 // actin filament-based movement // not recorded /// 0030048 // actin filament-based movement // inferred from sequence or structural similarity /// 0030048 // actin filament-based movement // inferred from electronic annotation /// 0030220 // platelet formation // not recorded /// 0030220 // platelet formation // inferred from sequence or structural similarity /// 0030220 // platelet formation // inferred from electronic annotation /// 0030224 // monocyte differentiation // not recorded /// 0030224 // monocyte differentiation // inferred from sequence or structural similarity /// 0030224 // monocyte differentiation // inferred from electronic annotation /// 0031532 // actin cytoskeleton reorganization // not recorded /// 0031532 // actin cytoskeleton reorganization // inferred from sequence or structural similarity /// 0031532 // actin cytoskeleton reorganization // inferred from electronic annotation /// 0032796 // uropod organization // inferred from electronic annotation /// 0032796 // uropod organization // not recorded /// 0043534 // blood vessel endothelial cell migration // not recorded /// 0043534 // blood vessel endothelial cell migration // inferred from sequence or structural similarity /// 0043534 // blood vessel endothelial cell migration // inferred from electronic annotation /// 0051295 // establishment of meiotic spindle localization // inferred from electronic annotation /// 0051295 // establishment of meiotic spindle localization // not recorded 0001725 // stress fiber // not recorded /// 0001725 // stress fiber // inferred from sequence or structural similarity /// 0001725 // stress fiber // inferred from electronic annotation /// 0001726 // ruffle // not recorded /// 0001726 // ruffle // inferred from sequence or structural similarity /// 0001726 // ruffle // inferred from electronic annotation /// 0001772 // immunological synapse // inferred from electronic annotation /// 0001772 // immunological synapse // not recorded /// 0001931 // uropod // inferred from electronic annotation /// 0001931 // uropod // not recorded /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005819 // spindle // not recorded /// 0005826 // actomyosin contractile ring // not recorded /// 0005826 // actomyosin contractile ring // inferred from sequence or structural similarity /// 0005826 // actomyosin contractile ring // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // not recorded /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0008305 // integrin complex // not recorded /// 0008305 // integrin complex // inferred from sequence or structural similarity /// 0008305 // integrin complex // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0015629 // actin cytoskeleton // inferred from sequence or structural similarity /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016459 // myosin complex // inferred from electronic annotation /// 0016459 // myosin complex // not recorded /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // not recorded /// 0031252 // cell leading edge // not recorded /// 0031252 // cell leading edge // inferred from sequence or structural similarity /// 0031252 // cell leading edge // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0031594 // neuromuscular junction // not recorded /// 0032154 // cleavage furrow // not recorded /// 0032154 // cleavage furrow // inferred from sequence or structural similarity /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from sequence or structural similarity /// 0043234 // protein complex // inferred from electronic annotation 0000146 // microfilament motor activity // not recorded /// 0000146 // microfilament motor activity // inferred from sequence or structural similarity /// 0000146 // microfilament motor activity // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0003779 // actin binding // inferred from electronic annotation /// 0005391 // sodium:potassium-exchanging ATPase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016887 // ATPase activity // not recorded /// 0016887 // ATPase activity // inferred from sequence or structural similarity /// 0016887 // ATPase activity // inferred from electronic annotation /// 0030898 // actin-dependent ATPase activity // inferred from electronic annotation /// 0030898 // actin-dependent ATPase activity // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0043495 // protein anchor // not recorded /// 0043495 // protein anchor // inferred from sequence or structural similarity /// 0043495 // protein anchor // inferred from electronic annotation /// 0043531 // ADP binding // inferred from electronic annotation /// 0043531 // ADP binding // not recorded /// 0051015 // actin filament binding // not recorded /// 0051015 // actin filament binding // inferred from sequence or structural similarity /// 0051015 // actin filament binding // inferred from electronic annotation 1371726_at AW433870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433870 /DB_XREF=gi:6965177 /DB_XREF=UI-R-BJ0p-afm-f-01-0-UI.s1 /CLONE=UI-R-BJ0p-afm-f-01-0-UI /FEA=EST /CNT=19 /TID=Rn.3000.1 /TIER=Stack /STK=17 /UG=Rn.3000 /UG_TITLE=ESTs AW433870 1371727_at AA893350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893350 /DB_XREF=gi:3020229 /DB_XREF=EST197153 /CLONE=RKIBF37 /FEA=EST /CNT=19 /TID=Rn.4187.1 /TIER=Stack /STK=17 /UG=Rn.4187 /UG_TITLE=ESTs, Highly similar to BGAL MOUSE BETA-GALACTOSIDASE PRECURSOR (M.musculus) AA893350 galactosidase, beta 1 Glb1 316033 NM_001108192 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0019388 // galactose catabolic process // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004565 // beta-galactosidase activity // inferred from direct assay /// 0004565 // beta-galactosidase activity // inferred from electronic annotation /// 0004565 // beta-galactosidase activity // inferred from mutant phenotype /// 0004565 // beta-galactosidase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0016936 // galactoside binding // inferred from direct assay /// 0043169 // cation binding // inferred from electronic annotation 1371728_at BF281133 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281133 /DB_XREF=gi:11212287 /DB_XREF=EST445808 /CLONE=RGIAB51 /FEA=EST /CNT=19 /TID=Rn.2513.1 /TIER=Stack /STK=17 /UG=Rn.2513 /UG_TITLE=ESTs BF281133 similar to ubiquitin protein ligase E3B LOC687633 687633 NM_001143894 0006464 // protein modification process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1371729_at AI169150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169150 /DB_XREF=gi:3705458 /DB_XREF=EST214984 /CLONE=RKIBO15 /FEA=EST /CNT=19 /TID=Rn.1136.1 /TIER=Stack /STK=17 /UG=Rn.1136 /UG_TITLE=ESTs, Highly similar to T50836 Yippee protein (H.sapiens) AI169150 yippee-like 5 (Drosophila) Ypel5 298792 NM_001035221 0055114 // oxidation reduction // inferred from electronic annotation 0008113 // peptide-methionine-(S)-S-oxide reductase activity // inferred from electronic annotation 1371730_at BF418786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418786 /DB_XREF=gi:11406775 /DB_XREF=UI-R-BJ2-bqj-a-02-0-UI.s1 /CLONE=UI-R-BJ2-bqj-a-02-0-UI /FEA=EST /CNT=19 /TID=Rn.3328.1 /TIER=Stack /STK=17 /UG=Rn.3328 /UG_TITLE=ESTs, Weakly similar to LONN_HUMAN MITOCHONDRIAL LON PROTEASE HOMOLOG PRECURSOR (H.sapiens) BF418786 lon peptidase 2, peroxisomal Lonp2 291922 NM_001033689 0006465 // signal peptide processing // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016485 // protein processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // not recorded /// 0005777 // peroxisome // inferred from electronic annotation /// 0005782 // peroxisomal matrix // inferred from direct assay /// 0005782 // peroxisomal matrix // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004176 // ATP-dependent peptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded 1371731_at AI408151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408151 /DB_XREF=gi:4251655 /DB_XREF=EST236441 /CLONE=ROVEH22 /FEA=EST /CNT=22 /TID=Rn.16607.2 /TIER=Stack /STK=17 /UG=Rn.16607 /LL=25741 /UG_GENE=Pfkl /UG_TITLE=Phosphofructokinase, liver, B-type AI408151 Similar to Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP) RGD1566215 301742 NM_001106929 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0030117 // membrane coat // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1371732_at BI285485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285485 /DB_XREF=gi:14939172 /DB_XREF=UI-R-DD0-caa-f-11-0-UI.s1 /CLONE=UI-R-DD0-caa-f-11-0-UI /FEA=EST /CNT=21 /TID=Rn.20274.1 /TIER=Stack /STK=17 /UG=Rn.20274 /UG_TITLE=ESTs BI285485 dermatopontin Dpt 289178 NM_001105965 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0030199 // collagen fibril organization // not recorded /// 0030199 // collagen fibril organization // inferred from electronic annotation 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 1371733_at BG667965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667965 /DB_XREF=gi:13889887 /DB_XREF=DRABRF11 /CLONE=DRABRF11 /FEA=EST /CNT=21 /TID=Rn.9383.1 /TIER=Stack /STK=17 /UG=Rn.9383 /UG_TITLE=ESTs, Highly similar to T27225 ADP-ribosylation factor Y57G11C.13 (similarity) - Caenorhabditis elegans (C.elegans) BG667965 ADP-ribosylation factor-like 8A Arl8a 498234 NM_001109071 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030496 // midbody // not recorded /// 0051233 // spindle midzone // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded 1371734_at BI282245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282245 /DB_XREF=gi:14932823 /DB_XREF=UI-R-CU0s-cby-c-12-0-UI.s1 /CLONE=UI-R-CU0s-cby-c-12-0-UI /FEA=EST /CNT=19 /TID=Rn.2197.1 /TIER=Stack /STK=17 /UG=Rn.2197 /UG_TITLE=ESTs BI282245 macrophage erythroblast attacher Maea 298982 NM_001008319 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0007010 // cytoskeleton organization // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0033033 // negative regulation of myeloid cell apoptosis // not recorded /// 0043249 // erythrocyte maturation // inferred from electronic annotation /// 0048821 // erythrocyte development // not recorded /// 0048821 // erythrocyte development // inferred from electronic annotation /// 0048822 // enucleate erythrocyte development // inferred from electronic annotation /// 0048822 // enucleate erythrocyte development // not recorded /// 0051301 // cell division // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // not recorded /// 0005826 // actomyosin contractile ring // not recorded /// 0005856 // cytoskeleton // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded 1371735_at AI105202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105202 /DB_XREF=gi:3709343 /DB_XREF=EST214491 /CLONE=RKIBG87 /FEA=EST /CNT=19 /TID=Rn.1532.1 /TIER=Stack /STK=17 /UG=Rn.1532 /UG_TITLE=ESTs AI105202 1371736_at AI411283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411283 /DB_XREF=gi:4254787 /DB_XREF=EST239577 /CLONE=RKIEO51 /FEA=EST /CNT=19 /TID=Rn.3288.1 /TIER=Stack /STK=17 /UG=Rn.3288 /UG_TITLE=ESTs AI411283 similar to 1810013D10Rik protein RGD1565192 501923 NM_001134639 1371737_at BI281720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281720 /DB_XREF=gi:14931750 /DB_XREF=UI-R-CT0s-cav-f-09-0-UI.s1 /CLONE=UI-R-CT0s-cav-f-09-0-UI /FEA=EST /CNT=18 /TID=Rn.8393.1 /TIER=Stack /STK=17 /UG=Rn.8393 /UG_TITLE=ESTs, Weakly similar to JE0343 terf protein - rat (R.norvegicus) BI281720 tripartite motif-containing 27 Trim27 291171 NM_001106115 /// NM_001134974 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045814 // negative regulation of gene expression, epigenetic // not recorded /// 0045814 // negative regulation of gene expression, epigenetic // inferred from electronic annotation /// 0070206 // protein trimerization // not recorded /// 0070206 // protein trimerization // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded /// 0031965 // nuclear membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371738_at BI287983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287983 /DB_XREF=gi:14944121 /DB_XREF=UI-R-CX0s-ccw-f-04-0-UI.s1 /CLONE=UI-R-CX0s-ccw-f-04-0-UI /FEA=EST /CNT=18 /TID=Rn.29789.1 /TIER=Stack /STK=17 /UG=Rn.29789 /UG_TITLE=ESTs, Weakly similar to T22762 hypothetical protein F56A8.1 - Caenorhabditis elegans (C.elegans) BI287983 anoctamin 10 Ano10 301111 XM_001078269 /// XM_236774 1371739_at AI104605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104605 /DB_XREF=gi:4134272 /DB_XREF=EST213894 /CLONE=RHECF91 /FEA=EST /CNT=18 /TID=Rn.22461.1 /TIER=Stack /STK=17 /UG=Rn.22461 /UG_TITLE=ESTs AI104605 1371740_at AI178732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178732 /DB_XREF=gi:3729370 /DB_XREF=EST222413 /CLONE=RPLCU87 /FEA=EST /CNT=18 /TID=Rn.9125.1 /TIER=Stack /STK=17 /UG=Rn.9125 /UG_TITLE=ESTs AI178732 suppressor of IKK epsilon Sike 362007 NM_001012182 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded 1371741_at AI409891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409891 /DB_XREF=gi:4253395 /DB_XREF=EST238184 /CLONE=RPLDM72 /FEA=EST /CNT=18 /TID=Rn.32312.1 /TIER=Stack /STK=17 /UG=Rn.32312 /UG_TITLE=ESTs AI409891 ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) Actr1a 294010 NM_001106364 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1371742_at BE102265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102265 /DB_XREF=gi:8494364 /DB_XREF=UI-R-BT1-aqk-d-12-0-UI.s1 /CLONE=UI-R-BT1-aqk-d-12-0-UI /FEA=EST /CNT=18 /TID=Rn.7278.1 /TIER=Stack /STK=17 /UG=Rn.7278 /UG_TITLE=ESTs, Weakly similar to splicing factor, arginineserine-rich (transformer 2 Drosophila homolog) 10 (Rattus norvegicus) (R.norvegicus) BE102265 small nuclear ribonucleoprotein 70 (U1) Snrnp70 361574 NM_001108483 0000398 // nuclear mRNA splicing, via spliceosome // not recorded /// 0000398 // nuclear mRNA splicing, via spliceosome // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0043484 // regulation of RNA splicing // not recorded /// 0043484 // regulation of RNA splicing // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1371743_at AA800291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800291 /DB_XREF=gi:2863246 /DB_XREF=EST189788 /CLONE=RHEAN46 /FEA=EST /CNT=18 /TID=Rn.4071.1 /TIER=Stack /STK=17 /UG=Rn.4071 /UG_TITLE=ESTs, Moderately similar to KGUA MOUSE GUANYLATE KINASE (M.musculus) AA800291 guanylate kinase 1 Guk1 303179 NM_001013115 0006163 // purine nucleotide metabolic process // inferred from electronic annotation /// 0006163 // purine nucleotide metabolic process // not recorded /// 0046939 // nucleotide phosphorylation // not recorded 0004385 // guanylate kinase activity // inferred from electronic annotation /// 0004385 // guanylate kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1371744_at BF282993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282993 /DB_XREF=gi:11214063 /DB_XREF=EST447584 /CLONE=RGIDW06 /FEA=EST /CNT=18 /TID=Rn.15931.1 /TIER=Stack /STK=17 /UG=Rn.15931 /UG_TITLE=ESTs BF282993 similar to Negative elongation factor D (NELF-D) (TH1-like protein) LOC679203 679203 XM_001055035 0016481 // negative regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1371745_at AI179388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179388 /DB_XREF=gi:3730026 /DB_XREF=EST223089 /CLONE=RSPCG54 /FEA=EST /CNT=21 /TID=Rn.4318.1 /TIER=Stack /STK=17 /UG=Rn.4318 /UG_TITLE=ESTs, Weakly similar to T10C6.5.p (Caenorhabditis elegans) (C.elegans) AI179388 CWC15 spliceosome-associated protein homolog (S. cerevisiae) Cwc15 300361 NM_001024987 0000398 // nuclear mRNA splicing, via spliceosome // inferred from sequence or structural similarity /// 0000398 // nuclear mRNA splicing, via spliceosome // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from sequence or structural similarity /// 0005681 // spliceosomal complex // inferred from electronic annotation 0003723 // RNA binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded 1371746_at AW525288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525288 /DB_XREF=gi:7167638 /DB_XREF=UI-R-BJ0p-aip-e-10-0-UI.s1 /CLONE=UI-R-BJ0p-aip-e-10-0-UI /FEA=EST /CNT=20 /TID=Rn.13646.1 /TIER=Stack /STK=17 /UG=Rn.13646 /UG_TITLE=ESTs AW525288 1371747_at AI406304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406304 /DB_XREF=gi:4249808 /DB_XREF=EST234590 /CLONE=RBRDM68 /FEA=EST /CNT=18 /TID=Rn.1389.1 /TIER=Stack /STK=17 /UG=Rn.1389 /UG_TITLE=ESTs AI406304 pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish) Ppdpf 296470 NM_001009316 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 1371748_at BI284306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284306 /DB_XREF=gi:14936863 /DB_XREF=UI-R-CX0s-ccq-f-02-0-UI.s1 /CLONE=UI-R-CX0s-ccq-f-02-0-UI /FEA=EST /CNT=18 /TID=Rn.20209.1 /TIER=Stack /STK=17 /UG=Rn.20209 /UG_TITLE=ESTs BI284306 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) Agpat1 406165 NM_212458 0001819 // positive regulation of cytokine production // not recorded /// 0006654 // phosphatidic acid biosynthetic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // not recorded /// 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // inferred from sequence or structural similarity /// 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046027 // phospholipid:diacylglycerol acyltransferase activity // not recorded 1371749_at AI169439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169439 /DB_XREF=gi:4134403 /DB_XREF=EST215291 /CLONE=RKIBS40 /FEA=EST /CNT=18 /TID=Rn.3452.1 /TIER=Stack /STK=17 /UG=Rn.3452 /UG_TITLE=ESTs, Weakly similar to D2089.3.p (Caenorhabditis elegans) (C.elegans) AI169439 similar to 2210021J22Rik protein RGD1306001 362975 NM_001130696 1371750_at BF418087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418087 /DB_XREF=gi:11406076 /DB_XREF=UI-R-CA0-blz-c-09-0-UI.s1 /CLONE=UI-R-CA0-blz-c-09-0-UI /FEA=EST /CNT=17 /TID=Rn.53871.1 /TIER=Stack /STK=17 /UG=Rn.53871 /UG_TITLE=ESTs BF418087 1371751_at BF409807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409807 /DB_XREF=gi:11397782 /DB_XREF=UI-R-CA1-bjr-a-06-0-UI.s1 /CLONE=UI-R-CA1-bjr-a-06-0-UI /FEA=EST /CNT=17 /TID=Rn.63071.1 /TIER=Stack /STK=17 /UG=Rn.63071 /UG_TITLE=ESTs BF409807 1371752_at AI105088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105088 /DB_XREF=gi:3709261 /DB_XREF=EST214377 /CLONE=RHECN50 /FEA=EST /CNT=17 /TID=Rn.9054.1 /TIER=Stack /STK=17 /UG=Rn.9054 /UG_TITLE=ESTs AI105088 RAN guanine nucleotide release factor Rangrf 287419 NM_001105790 1371753_at BI285082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285082 /DB_XREF=gi:14938372 /DB_XREF=UI-R-DB0-byw-a-02-0-UI.s1 /CLONE=UI-R-DB0-byw-a-02-0-UI /FEA=EST /CNT=17 /TID=Rn.79319.1 /TIER=Stack /STK=17 /UG=Rn.79319 /UG_TITLE=ESTs, Weakly similar to CYTS RAT CYSTATIN S PRECURSOR (R.norvegicus) BI285082 similar to Cystatin S precursor (LM protein) LOC296235 296235 NM_001037350 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation 1371754_at AI177358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177358 /DB_XREF=gi:3727996 /DB_XREF=EST220976 /CLONE=RPLBY04 /FEA=EST /CNT=17 /TID=Rn.17644.1 /TIER=Stack /STK=17 /UG=Rn.17644 /UG_TITLE=ESTs AI177358 solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 Slc25a25 246771 NM_145677 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1371755_at AA799607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799607 /DB_XREF=gi:2862562 /DB_XREF=EST189104 /CLONE=RHEAD10 /FEA=EST /CNT=17 /TID=Rn.3327.1 /TIER=Stack /STK=17 /UG=Rn.3327 /UG_TITLE=ESTs AA799607 1371756_at BI286411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286411 /DB_XREF=gi:14941030 /DB_XREF=UI-R-DE0-cak-f-06-0-UI.s1 /CLONE=UI-R-DE0-cak-f-06-0-UI /FEA=EST /CNT=17 /TID=Rn.23538.1 /TIER=Stack /STK=17 /UG=Rn.23538 /UG_TITLE=ESTs BI286411 1371757_s_at BI286411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286411 /DB_XREF=gi:14941030 /DB_XREF=UI-R-DE0-cak-f-06-0-UI.s1 /CLONE=UI-R-DE0-cak-f-06-0-UI /FEA=EST /CNT=17 /TID=Rn.23538.1 /TIER=Stack /STK=17 /UG=Rn.23538 /UG_TITLE=ESTs BI286411 similar to keratin complex 2, basic, gene 6a Krt6a 683313 NM_001101007 0005882 // intermediate filament // inferred from electronic annotation /// 0045095 // keratin filament // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 1371758_at BM986259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM986259 /DB_XREF=gi:19705648 /DB_XREF=EST531713 /CLONE=RGIAC84 /FEA=EST /CNT=17 /TID=Rn.3064.1 /TIER=Stack /STK=17 /UG=Rn.3064 /UG_TITLE=ESTs, Highly similar to YCC6_HUMAN HYPOTHETICAL PROTEIN CGI-126 (H.sapiens) BM986259 ubiquitin-fold modifier conjugating enzyme 1 Ufc1 445268 NM_001003709 0071569 // protein ufmylation // inferred from electronic annotation /// 0071569 // protein ufmylation // not recorded /// 0071569 // protein ufmylation // inferred from sequence or structural similarity 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0071568 // UFM1 conjugating enzyme activity // inferred from electronic annotation /// 0071568 // UFM1 conjugating enzyme activity // not recorded /// 0071568 // UFM1 conjugating enzyme activity // inferred from sequence or structural similarity 1371759_at BI299533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299533 /DB_XREF=gi:14975818 /DB_XREF=UI-R-CV2-cgu-d-04-0-UI.s1 /CLONE=UI-R-CV2-cgu-d-04-0-UI /FEA=EST /CNT=17 /TID=Rn.73441.1 /TIER=Stack /STK=17 /UG=Rn.73441 /UG_TITLE=ESTs BI299533 1371760_at BI291206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291206 /DB_XREF=gi:14950528 /DB_XREF=UI-R-CV2-cgm-b-03-0-UI.s1 /CLONE=UI-R-CV2-cgm-b-03-0-UI /FEA=EST /CNT=17 /TID=Rn.73452.1 /TIER=Stack /STK=17 /UG=Rn.73452 /UG_TITLE=ESTs BI291206 1371761_at AI013910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013910 /DB_XREF=gi:3227966 /DB_XREF=EST208585 /CLONE=RSPBZ37 /FEA=EST /CNT=32 /TID=Rn.2028.1 /TIER=Stack /STK=16 /UG=Rn.2028 /UG_TITLE=ESTs, Moderately similar to RL34 RAT 60S RIBOSOMAL PROTEIN L34 (R.norvegicus) AI013910 ribosomal protein L34 Rpl34 362041 NM_001108567 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1371762_at AA858962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858962 /DB_XREF=gi:4229236 /DB_XREF=UI-R-A0-aj-c-09-0-UI.s3 /CLONE=UI-R-A0-aj-c-09-0-UI /FEA=EST /CNT=26 /TID=Rn.35762.1 /TIER=Stack /STK=16 /UG=Rn.35762 /UG_TITLE=ESTs, Highly similar to PLASMA RETINOL-BINDING PROTEIN PRECURSOR (R.norvegicus) AA858962 retinol binding protein 4, plasma Rbp4 25703 NM_013162 0001654 // eye development // inferred from electronic annotation /// 0001654 // eye development // not recorded /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006094 // gluconeogenesis // not recorded /// 0006810 // transport // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007284 // spermatogonial cell division // inferred from electronic annotation /// 0007284 // spermatogonial cell division // not recorded /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0030277 // maintenance of gastrointestinal epithelium // inferred from electronic annotation /// 0030277 // maintenance of gastrointestinal epithelium // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0032024 // positive regulation of insulin secretion // inferred from electronic annotation /// 0032024 // positive regulation of insulin secretion // not recorded /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032526 // response to retinoic acid // not recorded /// 0032868 // response to insulin stimulus // inferred from electronic annotation /// 0032868 // response to insulin stimulus // not recorded /// 0034633 // retinol transport // not recorded /// 0034633 // retinol transport // inferred from electronic annotation /// 0042572 // retinol metabolic process // inferred from electronic annotation /// 0042572 // retinol metabolic process // not recorded /// 0042574 // retinal metabolic process // inferred from electronic annotation /// 0042574 // retinal metabolic process // not recorded /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042593 // glucose homeostasis // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0048562 // embryonic organ morphogenesis // inferred from electronic annotation /// 0048562 // embryonic organ morphogenesis // not recorded /// 0048706 // embryonic skeletal system development // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // not recorded /// 0048738 // cardiac muscle tissue development // inferred from electronic annotation /// 0048738 // cardiac muscle tissue development // not recorded /// 0048807 // female genitalia morphogenesis // inferred from electronic annotation /// 0048807 // female genitalia morphogenesis // not recorded /// 0050908 // detection of light stimulus involved in visual perception // inferred from electronic annotation /// 0050908 // detection of light stimulus involved in visual perception // not recorded /// 0051024 // positive regulation of immunoglobulin secretion // inferred from electronic annotation /// 0051024 // positive regulation of immunoglobulin secretion // not recorded /// 0055085 // transmembrane transport // not recorded /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // not recorded /// 0060044 // negative regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060044 // negative regulation of cardiac muscle cell proliferation // not recorded /// 0060059 // embryonic retina morphogenesis in camera-type eye // inferred from electronic annotation /// 0060059 // embryonic retina morphogenesis in camera-type eye // not recorded /// 0060065 // uterus development // inferred from electronic annotation /// 0060065 // uterus development // not recorded /// 0060068 // vagina development // inferred from electronic annotation /// 0060068 // vagina development // not recorded /// 0060157 // urinary bladder development // inferred from electronic annotation /// 0060157 // urinary bladder development // not recorded /// 0060347 // heart trabecula formation // inferred from electronic annotation /// 0060347 // heart trabecula formation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation 0005215 // transporter activity // traceable author statement /// 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005501 // retinoid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016918 // retinal binding // inferred from electronic annotation /// 0019841 // retinol binding // not recorded /// 0019841 // retinol binding // traceable author statement /// 0019841 // retinol binding // inferred from electronic annotation /// 0034632 // retinol transporter activity // inferred from electronic annotation /// 0034632 // retinol transporter activity // not recorded 1371763_at BI274533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274533 /DB_XREF=gi:14885523 /DB_XREF=UI-R-CW0-bwj-h-11-0-UI.s1 /CLONE=UI-R-CW0-bwj-h-11-0-UI /FEA=EST /CNT=27 /TID=Rn.3085.1 /TIER=Stack /STK=16 /UG=Rn.3085 /UG_TITLE=ESTs BI274533 similar to RIKEN cDNA 4931406C07 RGD1309534 363016 NM_001014206 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371764_at AI411771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411771 /DB_XREF=gi:4255275 /DB_XREF=EST240065 /CLONE=RPLDJ60 /FEA=EST /CNT=24 /TID=Rn.2183.1 /TIER=Stack /STK=16 /UG=Rn.2183 /UG_TITLE=ESTs, Weakly similar to T34195 hypothetical protein D1022.1 - Caenorhabditis elegans (C.elegans) AI411771 ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast) Ube2j2 298689 NM_001007655 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // not recorded 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1371765_at AA850895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850895 /DB_XREF=gi:2938435 /DB_XREF=EST193663 /CLONE=ROVAO14 /FEA=EST /CNT=23 /TID=Rn.7722.1 /TIER=Stack /STK=16 /UG=Rn.7722 /UG_TITLE=ESTs, Highly similar to H2A1 RAT HISTONE H2A.1 (R.norvegicus) AA850895 histone cluster 3, H2a Hist3h2a 64646 NM_021840 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1371766_at BE113242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113242 /DB_XREF=gi:8505347 /DB_XREF=UI-R-BJ1-awd-b-10-0-UI.s1 /CLONE=UI-R-BJ1-awd-b-10-0-UI /FEA=EST /CNT=24 /TID=Rn.4018.1 /TIER=Stack /STK=16 /UG=Rn.4018 /UG_TITLE=ESTs BE113242 1371767_at BG380270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380270 /DB_XREF=gi:13304742 /DB_XREF=UI-R-CS0-btv-a-11-0-UI.s1 /CLONE=UI-R-CS0-btv-a-11-0-UI /FEA=EST /CNT=23 /TID=Rn.6893.1 /TIER=Stack /STK=16 /UG=Rn.6893 /UG_TITLE=ESTs BG380270 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 Smarcd1 363002 NM_001108752 0006338 // chromatin remodeling // not recorded /// 0048096 // chromatin-mediated maintenance of transcription // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0016514 // SWI/SNF complex // not recorded /// 0016585 // chromatin remodeling complex // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0071564 // npBAF complex // not recorded /// 0071565 // nBAF complex // not recorded 0005515 // protein binding // not recorded /// 0032947 // protein complex scaffold // not recorded 1371768_at BM391850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391850 /DB_XREF=gi:18191903 /DB_XREF=UI-R-DO1-cmk-h-14-0-UI.s1 /CLONE=UI-R-DO1-cmk-h-14-0-UI /FEA=EST /CNT=26 /TID=Rn.9200.1 /TIER=Stack /STK=16 /UG=Rn.9200 /UG_TITLE=ESTs, Weakly similar to T16860 hypothetical protein T13C2.4 - Caenorhabditis elegans (C.elegans) BM391850 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) Ssu72 298681 NM_001025657 0006397 // mRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1371769_at BI279666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279666 /DB_XREF=gi:14927699 /DB_XREF=UI-R-DE0-caf-c-03-0-UI.s1 /CLONE=UI-R-DE0-caf-c-03-0-UI /FEA=EST /CNT=23 /TID=Rn.3752.1 /TIER=Stack /STK=16 /UG=Rn.3752 /UG_TITLE=ESTs BI279666 secretory carrier membrane protein 2 Scamp2 65168 NM_023955 0006886 // intracellular protein transport // traceable author statement /// 0006897 // endocytosis // traceable author statement /// 0015031 // protein transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation 0005794 // Golgi apparatus // not recorded /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from direct assay /// 0032588 // trans-Golgi network membrane // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0055038 // recycling endosome membrane // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008565 // protein transporter activity // traceable author statement 1371770_at AW434268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434268 /DB_XREF=gi:6965575 /DB_XREF=UI-R-BJ0p-afw-c-01-0-UI.s1 /CLONE=UI-R-BJ0p-afw-c-01-0-UI /FEA=EST /CNT=23 /TID=Rn.109.1 /TIER=Stack /STK=16 /UG=Rn.109 /UG_TITLE=ESTs, Highly similar to KE2 MOUSE PROTEIN KE2 (M.musculus) AW434268 prefoldin subunit 6 Pfdn6 309629 NM_001164718 /// NM_212506 0006457 // protein folding // inferred from electronic annotation /// 0051131 // chaperone-mediated protein complex assembly // inferred from electronic annotation /// 0051131 // chaperone-mediated protein complex assembly // not recorded 0016272 // prefoldin complex // inferred from electronic annotation /// 0016272 // prefoldin complex // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation /// 0051087 // chaperone binding // inferred from electronic annotation /// 0051087 // chaperone binding // not recorded 1371771_at BI274094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274094 /DB_XREF=gi:14884692 /DB_XREF=UI-R-CW0-bwc-g-11-0-UI.s1 /CLONE=UI-R-CW0-bwc-g-11-0-UI /FEA=EST /CNT=23 /TID=Rn.12602.1 /TIER=Stack /STK=16 /UG=Rn.12602 /UG_TITLE=ESTs, Weakly similar to AGRIN PRECURSOR (R.norvegicus) BI274094 Perlecan LOC313641 313641 XR_005454 /// XR_009630 1371772_at AI410425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410425 /DB_XREF=gi:4253929 /DB_XREF=EST238718 /CLONE=RHECS48 /FEA=EST /CNT=22 /TID=Rn.30490.1 /TIER=Stack /STK=16 /UG=Rn.30490 /UG_TITLE=ESTs AI410425 alkB, alkylation repair homolog 3 (E. coli) Alkbh3 362169 NM_001014180 0006281 // DNA repair // not recorded /// 0006281 // DNA repair // inferred from sequence or structural similarity /// 0006281 // DNA repair // inferred from electronic annotation /// 0006307 // DNA dealkylation involved in DNA repair // not recorded /// 0006307 // DNA dealkylation involved in DNA repair // inferred from sequence or structural similarity /// 0006307 // DNA dealkylation involved in DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0035552 // oxidative single-stranded DNA demethylation // not recorded /// 0035552 // oxidative single-stranded DNA demethylation // inferred from sequence or structural similarity /// 0035552 // oxidative single-stranded DNA demethylation // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0080111 // DNA demethylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003684 // damaged DNA binding // not recorded /// 0004519 // endonuclease activity // not recorded /// 0004527 // exonuclease activity // not recorded /// 0008198 // ferrous iron binding // not recorded /// 0008198 // ferrous iron binding // inferred from sequence or structural similarity /// 0008198 // ferrous iron binding // inferred from electronic annotation /// 0010302 // 2-oxoglutarate-dependent dioxygenase activity // inferred from electronic annotation /// 0010302 // 2-oxoglutarate-dependent dioxygenase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0043734 // DNA-N1-methyladenine dioxygenase activity // not recorded /// 0043734 // DNA-N1-methyladenine dioxygenase activity // inferred from sequence or structural similarity /// 0043734 // DNA-N1-methyladenine dioxygenase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051747 // cytosine C-5 DNA demethylase activity // inferred from electronic annotation /// 0051747 // cytosine C-5 DNA demethylase activity // not recorded 1371773_at AI179413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179413 /DB_XREF=gi:3730051 /DB_XREF=EST223117 /CLONE=RSPCG95 /FEA=EST /CNT=21 /TID=Rn.22153.1 /TIER=Stack /STK=16 /UG=Rn.22153 /UG_TITLE=ESTs AI179413 1371774_at AA893220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893220 /DB_XREF=gi:4132263 /DB_XREF=EST197023 /CLONE=RKIBD68 /FEA=EST /CNT=21 /TID=Rn.2604.1 /TIER=Stack /STK=16 /UG=Rn.2604 /UG_TITLE=ESTs, Highly similar to DIAMINE ACETYLTRANSFERASE (M.musculus) AA893220 spermidine/spermine N1-acetyl transferase 1 Sat1 302642 NM_001007667 0006595 // polyamine metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded 0005622 // intracellular // not recorded /// 0005625 // soluble fraction // inferred from direct assay 0005515 // protein binding // not recorded /// 0008080 // N-acetyltransferase activity // inferred from direct assay /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019809 // spermidine binding // inferred from direct assay 1371775_at AI172057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172057 /DB_XREF=gi:3712097 /DB_XREF=EST218052 /CLONE=RMUBU40 /FEA=EST /CNT=20 /TID=Rn.22085.1 /TIER=Stack /STK=16 /UG=Rn.22085 /UG_TITLE=ESTs AI172057 1371776_at AA819268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819268 /DB_XREF=gi:4227927 /DB_XREF=UI-R-A0-al-d-12-0-UI.s2 /CLONE=UI-R-A0-al-d-12-0-UI /FEA=EST /CNT=20 /TID=Rn.2676.1 /TIER=Stack /STK=16 /UG=Rn.2676 /UG_TITLE=ESTs AA819268 1371777_at BM383696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383696 /DB_XREF=gi:18183749 /DB_XREF=UI-R-DM1-ckb-e-07-0-UI.s1 /CLONE=UI-R-DM1-ckb-e-07-0-UI /FEA=EST /CNT=20 /TID=Rn.2995.1 /TIER=Stack /STK=16 /UG=Rn.2995 /UG_TITLE=ESTs, Weakly similar to PAB1 MOUSE POLYADENYLATE-BINDING PROTEIN 1 (M.musculus) BM383696 poly(A) binding protein, cytoplasmic 4 Pabpc4 298510 NM_001100538 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008143 // poly(A) RNA binding // not recorded /// 0008266 // poly(U) RNA binding // not recorded /// 0017130 // poly(C) RNA binding // not recorded 1371778_at BI296773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296773 /DB_XREF=gi:14961533 /DB_XREF=UI-R-DK0-cfz-b-06-0-UI.s1 /CLONE=UI-R-DK0-cfz-b-06-0-UI /FEA=EST /CNT=20 /TID=Rn.16849.1 /TIER=Stack /STK=16 /UG=Rn.16849 /UG_TITLE=ESTs, Weakly similar to T20254 hypothetical protein C55A6.1 - Caenorhabditis elegans (C.elegans) BI296773 ring finger protein 146 Rnf146 308051 NM_001012060 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371779_at AI408852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408852 /DB_XREF=gi:4252356 /DB_XREF=EST237143 /CLONE=RKIDP61 /FEA=EST /CNT=26 /TID=Rn.3602.1 /TIER=Stack /STK=16 /UG=Rn.3602 /UG_TITLE=ESTs, Highly similar to SNX6_HUMAN SORTING NEXIN 6 (H.sapiens) AI408852 sorting nexin 6 Snx6 362738 NM_001108711 0007154 // cell communication // inferred from electronic annotation /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1371780_at AA850164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850164 /DB_XREF=gi:2937704 /DB_XREF=EST192931 /CLONE=ROVAD34 /FEA=EST /CNT=25 /TID=Rn.4066.1 /TIER=Stack /STK=16 /UG=Rn.4066 /UG_TITLE=ESTs AA850164 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 Kdelr2 304290 NM_001013122 0006621 // protein retention in ER lumen // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046923 // ER retention sequence binding // inferred from electronic annotation 1371781_at BI285863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285863 /DB_XREF=gi:14939936 /DB_XREF=UI-R-CX0s-ccv-g-04-0-UI.s1 /CLONE=UI-R-CX0s-ccv-g-04-0-UI /FEA=EST /CNT=21 /TID=Rn.9445.1 /TIER=Stack /STK=16 /UG=Rn.9445 /UG_TITLE=ESTs BI285863 signal transducer and activator of transcription 3 Stat3 25125 NM_012747 0001659 // temperature homeostasis // not recorded /// 0001659 // temperature homeostasis // inferred from sequence or structural similarity /// 0001659 // temperature homeostasis // inferred from electronic annotation /// 0001754 // eye photoreceptor cell differentiation // not recorded /// 0001754 // eye photoreceptor cell differentiation // inferred from sequence or structural similarity /// 0001754 // eye photoreceptor cell differentiation // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006953 // acute-phase response // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0007259 // JAK-STAT cascade // traceable author statement /// 0010033 // response to organic substance // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019953 // sexual reproduction // not recorded /// 0019953 // sexual reproduction // inferred from sequence or structural similarity /// 0019953 // sexual reproduction // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032355 // response to estradiol stimulus // not recorded /// 0032355 // response to estradiol stimulus // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // not recorded /// 0034097 // response to cytokine stimulus // inferred from direct assay /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042593 // glucose homeostasis // not recorded /// 0042593 // glucose homeostasis // inferred from sequence or structural similarity /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042755 // eating behavior // not recorded /// 0042755 // eating behavior // inferred from sequence or structural similarity /// 0042755 // eating behavior // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from expression pattern /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060397 // JAK-STAT cascade involved in growth hormone signaling pathway // not recorded /// 0060397 // JAK-STAT cascade involved in growth hormone signaling pathway // inferred from sequence or structural similarity /// 0060397 // JAK-STAT cascade involved in growth hormone signaling pathway // inferred from electronic annotation /// 0070102 // interleukin-6-mediated signaling pathway // inferred from electronic annotation /// 0070102 // interleukin-6-mediated signaling pathway // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // not recorded /// 0046983 // protein dimerization activity // inferred from sequence or structural similarity /// 0046983 // protein dimerization activity // inferred from electronic annotation 1371782_at BF283798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283798 /DB_XREF=gi:11214868 /DB_XREF=EST448389 /CLONE=RGIEG91 /FEA=EST /CNT=20 /TID=Rn.8287.1 /TIER=Stack /STK=16 /UG=Rn.8287 /UG_TITLE=ESTs, Moderately similar to T17302 hypothetical protein DKFZp564D177.1 (H.sapiens) BF283798 nipsnap homolog 3B (C. elegans) Nipsnap3b 313211 NM_001009422 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1371783_at AI009936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009936 /DB_XREF=gi:3223768 /DB_XREF=EST204387 /CLONE=RLUBR05 /FEA=EST /CNT=20 /TID=Rn.8837.1 /TIER=Stack /STK=16 /UG=Rn.8837 /UG_TITLE=ESTs, Highly similar to HC30_HUMAN PROTEIN HSPC030 (H.sapiens) AI009936 selenoprotein K Selk 290549 NM_207589 0006979 // response to oxidative stress // not recorded 0005783 // endoplasmic reticulum // not recorded 1371784_at BI285682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285682 /DB_XREF=gi:14939573 /DB_XREF=UI-R-CT0s-cas-c-09-0-UI.s1 /CLONE=UI-R-CT0s-cas-c-09-0-UI /FEA=EST /CNT=20 /TID=Rn.15373.1 /TIER=Stack /STK=16 /UG=Rn.15373 /UG_TITLE=ESTs, Weakly similar to DnaJ-like protein (Rattus norvegicus) (R.norvegicus) BI285682 DnaJ (Hsp40) homolog, subfamily C, member 7 Dnajc7 303536 NM_213625 0070389 // chaperone cofactor-dependent protein refolding // inferred from electronic annotation /// 0070389 // chaperone cofactor-dependent protein refolding // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005488 // binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // not recorded 1371785_at BI303379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303379 /DB_XREF=gi:14979659 /DB_XREF=UI-R-DQ0-cja-c-13-0-UI.s1 /CLONE=UI-R-DQ0-cja-c-13-0-UI /FEA=EST /CNT=20 /TID=Rn.8543.1 /TIER=Stack /STK=16 /UG=Rn.8543 /UG_TITLE=ESTs BI303379 tumor necrosis factor receptor superfamily, member 12a Tnfrsf12a 302965 NM_181086 0006931 // substrate-dependent cell migration, cell attachment to substrate // inferred from electronic annotation /// 0006931 // substrate-dependent cell migration, cell attachment to substrate // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0008219 // cell death // inferred from electronic annotation /// 0008219 // cell death // not recorded /// 0045773 // positive regulation of axon extension // inferred from electronic annotation /// 0045773 // positive regulation of axon extension // not recorded 0001726 // ruffle // inferred from electronic annotation /// 0001726 // ruffle // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371786_at BE111791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111791 /DB_XREF=gi:8503896 /DB_XREF=UI-R-BJ1-avx-h-02-0-UI.s1 /CLONE=UI-R-BJ1-avx-h-02-0-UI /FEA=EST /CNT=19 /TID=Rn.3303.1 /TIER=Stack /STK=16 /UG=Rn.3303 /UG_TITLE=ESTs, Weakly similar to S37583 RING finger protein rfp - mouse (M.musculus) BE111791 tripartite motif-containing 35 Trim35 498538 NM_001025142 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0045930 // negative regulation of mitotic cell cycle // inferred from electronic annotation /// 0045930 // negative regulation of mitotic cell cycle // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371787_at AI231686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231686 /DB_XREF=gi:3815566 /DB_XREF=EST228374 /CLONE=REMDN58 /FEA=EST /CNT=19 /TID=Rn.1444.1 /TIER=Stack /STK=16 /UG=Rn.1444 /UG_TITLE=ESTs AI231686 1371788_at AI230061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230061 /DB_XREF=gi:3813948 /DB_XREF=EST226756 /CLONE=REMCQ46 /FEA=EST /CNT=19 /TID=Rn.3249.1 /TIER=Stack /STK=16 /UG=Rn.3249 /UG_TITLE=ESTs, Highly similar to AC004882 4 match to human (H.sapiens) AI230061 zinc finger, matrin type 5 Zmat5 501926 XM_001067336 /// XM_577351 0005634 // nucleus // not recorded /// 0005689 // U12-type spliceosomal complex // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0008270 // zinc ion binding // inferred from electronic annotation 1371789_at AI411601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411601 /DB_XREF=gi:4255105 /DB_XREF=EST239895 /CLONE=ROVET20 /FEA=EST /CNT=19 /TID=Rn.12681.1 /TIER=Stack /STK=16 /UG=Rn.12681 /UG_TITLE=ESTs, Highly similar to CLPP MOUSE PUTATIVE ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT, MITOCHONDRIAL PRECURSOR (M.musculus) AI411601 1371790_at BI277658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277658 /DB_XREF=gi:14923745 /DB_XREF=UI-R-CY0-bxt-h-06-0-UI.s1 /CLONE=UI-R-CY0-bxt-h-06-0-UI /FEA=EST /CNT=22 /TID=Rn.12817.1 /TIER=Stack /STK=16 /UG=Rn.12817 /UG_TITLE=ESTs BI277658 mitochondrial ribosomal protein L45 Mrpl45 287656 NM_001105834 0006886 // intracellular protein transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005744 // mitochondrial inner membrane presequence translocase complex // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from electronic annotation 1371791_at AI227937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227937 /DB_XREF=gi:4135297 /DB_XREF=EST224632 /CLONE=RBRCN81 /FEA=EST /CNT=20 /TID=Rn.33769.1 /TIER=Stack /STK=16 /UG=Rn.33769 /UG_TITLE=ESTs, Moderately similar to SUR2 MOUSE SURFEIT LOCUS PROTEIN 2 (M.musculus) AI227937 surfeit 4 Surf4 619346 NM_001033868 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371792_at AI102045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102045 /DB_XREF=gi:3706880 /DB_XREF=EST211334 /CLONE=RBRBY29 /FEA=EST /CNT=20 /TID=Rn.2628.1 /TIER=Stack /STK=16 /UG=Rn.2628 /UG_TITLE=ESTs, Moderately similar to NIF1_MOUSE Nuclear LIM interactor-interacting factor 1 (NLI-interacting factor 1) (NIF-like protein) (M.musculus) AI102045 nuclear LIM interactor-interacting factor 2-like LOC100365370 100365370 XM_002726958 0016791 // phosphatase activity // inferred from electronic annotation 1371793_at AI008697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008697 /DB_XREF=gi:3222529 /DB_XREF=EST203148 /CLONE=REMBB77 /FEA=EST /CNT=20 /TID=Rn.13571.1 /TIER=Stack /STK=16 /UG=Rn.13571 /UG_TITLE=ESTs, Highly similar to ACES RAT ACETYLCHOLINESTERASE PRECURSOR (R.norvegicus) AI008697 1371794_at BM391449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391449 /DB_XREF=gi:18191502 /DB_XREF=UI-R-DY0-ckr-i-01-0-UI.s1 /CLONE=UI-R-DY0-ckr-i-01-0-UI /FEA=EST /CNT=19 /TID=Rn.6467.1 /TIER=Stack /STK=16 /UG=Rn.6467 /UG_TITLE=ESTs, Moderately similar to T14273 zinc finger protein 106 - mouse (M.musculus) BM391449 1371795_at AA848795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848795 /DB_XREF=gi:2936335 /DB_XREF=EST191556 /CLONE=RLUAG53 /FEA=EST /CNT=18 /TID=Rn.2523.1 /TIER=Stack /STK=16 /UG=Rn.2523 /UG_TITLE=ESTs AA848795 1371796_at AA799476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799476 /DB_XREF=gi:2862431 /DB_XREF=EST188973 /CLONE=RHEAB47 /FEA=EST /CNT=18 /TID=Rn.3027.1 /TIER=Stack /STK=16 /UG=Rn.3027 /UG_TITLE=ESTs AA799476 Thioredoxin-related transmembrane protein 2 Tmx2 295701 NM_001007643 0045454 // cell redox homeostasis // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1371797_at BM391890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391890 /DB_XREF=gi:18191943 /DB_XREF=UI-R-DO1-cmk-p-06-0-UI.s1 /CLONE=UI-R-DO1-cmk-p-06-0-UI /FEA=EST /CNT=18 /TID=Rn.19416.1 /TIER=Stack /STK=16 /UG=Rn.19416 /UG_TITLE=ESTs, Highly similar to PYR1_HUMAN CAD PROTEIN (H.sapiens) BM391890 carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase Cad 24240 NM_001105710 0006207 // 'de novo' pyrimidine base biosynthetic process // inferred from electronic annotation /// 0006221 // pyrimidine nucleotide biosynthetic process // inferred from electronic annotation /// 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0006807 // nitrogen compound metabolic process // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0009790 // embryo development // inferred from expression pattern /// 0014075 // response to amine stimulus // inferred from expression pattern /// 0017144 // drug metabolic process // inferred from mutant phenotype /// 0031000 // response to caffeine // inferred from expression pattern /// 0031100 // organ regeneration // inferred from expression pattern /// 0033574 // response to testosterone stimulus // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded /// 0016363 // nuclear matrix // not recorded /// 0043234 // protein complex // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004070 // aspartate carbamoyltransferase activity // inferred from direct assay /// 0004070 // aspartate carbamoyltransferase activity // inferred from electronic annotation /// 0004086 // carbamoyl-phosphate synthase activity // inferred from electronic annotation /// 0004088 // carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity // inferred from direct assay /// 0004151 // dihydroorotase activity // inferred from direct assay /// 0004151 // dihydroorotase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016743 // carboxyl- or carbamoyltransferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation /// 0016812 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0042802 // identical protein binding // inferred from direct assay 1371798_at AI013011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013011 /DB_XREF=gi:4133726 /DB_XREF=EST207462 /CLONE=RSPBB51 /FEA=EST /CNT=18 /TID=Rn.8367.1 /TIER=Stack /STK=16 /UG=Rn.8367 /UG_TITLE=ESTs AI013011 1371799_at AI175438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175438 /DB_XREF=gi:3726076 /DB_XREF=EST218984 /CLONE=RMUCN47 /FEA=EST /CNT=18 /TID=Rn.1112.1 /TIER=Stack /STK=16 /UG=Rn.1112 /UG_TITLE=ESTs, Weakly similar to A36690 sucrose alpha-glucosidase (R.norvegicus) AI175438 glucosidase, alpha, acid Gaa 367562 NM_199118 0001525 // angiogenesis // inferred from electronic annotation /// 0002026 // regulation of the force of heart contraction // not recorded /// 0002086 // diaphragm contraction // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // not recorded /// 0005980 // glycogen catabolic process // inferred from direct assay /// 0005980 // glycogen catabolic process // inferred from mutant phenotype /// 0005980 // glycogen catabolic process // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006436 // tryptophanyl-tRNA aminoacylation // inferred from electronic annotation /// 0006941 // striated muscle contraction // not recorded /// 0007040 // lysosome organization // not recorded /// 0007517 // muscle organ development // not recorded /// 0007626 // locomotory behavior // not recorded /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009888 // tissue development // not recorded /// 0043181 // vacuolar sequestering // not recorded /// 0043587 // tongue morphogenesis // not recorded /// 0046716 // muscle cell homeostasis // not recorded /// 0050884 // neuromuscular process controlling posture // not recorded /// 0050885 // neuromuscular process controlling balance // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0060048 // cardiac muscle contraction // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004558 // alpha-glucosidase activity // inferred from direct assay /// 0004558 // alpha-glucosidase activity // inferred from mutant phenotype /// 0004558 // alpha-glucosidase activity // not recorded /// 0004558 // alpha-glucosidase activity // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004830 // tryptophan-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation 1371800_at AI230538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230538 /DB_XREF=gi:3814440 /DB_XREF=EST227248 /CLONE=REMCY04 /FEA=EST /CNT=18 /TID=Rn.2428.1 /TIER=Stack /STK=16 /UG=Rn.2428 /UG_TITLE=ESTs, Weakly similar to PHP DROME POLYHOMEOTIC-PROXIMAL CHROMATIN PROTEIN (D.melanogaster) AI230538 polyhomeotic homolog 2 (Drosophila) Phc2 313038 NM_001013169 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0031519 // PcG protein complex // not recorded 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1371801_at AI104354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104354 /DB_XREF=gi:3708725 /DB_XREF=EST213643 /CLONE=RHECC23 /FEA=EST /CNT=18 /TID=Rn.12931.1 /TIER=Stack /STK=16 /UG=Rn.12931 /UG_TITLE=ESTs AI104354 myozenin 2 Myoz2 295426 NM_001106469 0015629 // actin cytoskeleton // not recorded /// 0030018 // Z disc // not recorded 0005515 // protein binding // not recorded 1371802_at AA891472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891472 /DB_XREF=gi:3018351 /DB_XREF=EST195275 /CLONE=RHEAU80 /FEA=EST /CNT=18 /TID=Rn.3416.1 /TIER=Stack /STK=16 /UG=Rn.3416 /UG_TITLE=ESTs, Highly similar to COPE MOUSE COATOMER EPSILON SUBUNIT (M.musculus) AA891472 coatomer protein complex, subunit epsilon Cope 290659 NM_001106076 0006890 // retrograde vesicle-mediated transport, Golgi to ER // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // not recorded /// 0016044 // cellular membrane organization // not recorded /// 0048205 // COPI coating of Golgi vesicle // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // not recorded /// 0030126 // COPI vesicle coat // inferred from electronic annotation /// 0030137 // COPI-coated vesicle // inferred from electronic annotation /// 0030137 // COPI-coated vesicle // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1371803_at AI717483 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717483 /DB_XREF=gi:5034739 /DB_XREF=UI-R-Y0-acb-f-11-0-UI.s1 /CLONE=UI-R-Y0-acb-f-11-0-UI /FEA=EST /CNT=18 /TID=Rn.11732.1 /TIER=Stack /STK=16 /UG=Rn.11732 /UG_TITLE=ESTs, Highly similar to SAP3 MOUSE GANGLIOSIDE GM2 ACTIVATOR PRECURSOR (M.musculus) AI717483 GM2 ganglioside activator Gm2a 282838 NM_172335 0001573 // ganglioside metabolic process // inferred from direct assay /// 0006689 // ganglioside catabolic process // not recorded /// 0006689 // ganglioside catabolic process // inferred from electronic annotation /// 0006869 // lipid transport // inferred from direct assay /// 0006944 // cellular membrane fusion // inferred from direct assay /// 0007611 // learning or memory // not recorded /// 0007611 // learning or memory // inferred from electronic annotation /// 0009313 // oligosaccharide catabolic process // not recorded /// 0009313 // oligosaccharide catabolic process // inferred from electronic annotation /// 0019915 // lipid storage // not recorded /// 0019915 // lipid storage // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded /// 0050877 // neurological system process // not recorded /// 0050877 // neurological system process // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0051345 // positive regulation of hydrolase activity // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005764 // lysosome // inferred from direct assay /// 0005889 // hydrogen:potassium-exchanging ATPase complex // inferred from direct assay /// 0009898 // internal side of plasma membrane // inferred from direct assay /// 0045179 // apical cortex // inferred from direct assay 0004563 // beta-N-acetylhexosaminidase activity // not recorded /// 0004563 // beta-N-acetylhexosaminidase activity // inferred from electronic annotation /// 0005319 // lipid transporter activity // inferred from direct assay /// 0008047 // enzyme activator activity // not recorded /// 0008047 // enzyme activator activity // inferred from electronic annotation /// 0008289 // lipid binding // inferred by curator /// 0016004 // phospholipase activator activity // inferred from direct assay /// 0032428 // beta-N-acetylgalactosaminidase activity // inferred from direct assay 1371804_at AI172266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172266 /DB_XREF=gi:4134730 /DB_XREF=EST218267 /CLONE=RMUBX13 /FEA=EST /CNT=18 /TID=Rn.4031.1 /TIER=Stack /STK=16 /UG=Rn.4031 /UG_TITLE=ESTs AI172266 cytidine and dCMP deaminase domain containing 1 Cdadc1 361052 NM_001012156 0003824 // catalytic activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1371805_at AI406508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406508 /DB_XREF=gi:4250012 /DB_XREF=EST234794 /CLONE=RBRDL68 /FEA=EST /CNT=26 /TID=Rn.11978.1 /TIER=Stack /STK=16 /UG=Rn.11978 /UG_TITLE=ESTs, Weakly similar to S68418 protein phosphatase 1M chain M110 isoform - rat (R.norvegicus) AI406508 ankyrin repeat domain 46 Ankrd46 299982 NM_001013948 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1371806_at BI283794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283794 /DB_XREF=gi:14935888 /DB_XREF=UI-R-CW0s-cch-g-07-0-UI.s1 /CLONE=UI-R-CW0s-cch-g-07-0-UI /FEA=EST /CNT=26 /TID=Rn.17134.1 /TIER=Stack /STK=16 /UG=Rn.17134 /UG_TITLE=ESTs BI283794 DiGeorge syndrome critical region gene 8 Dgcr8 287954 NM_001105865 0031053 // primary microRNA processing // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371807_at BE110607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110607 /DB_XREF=gi:8502712 /DB_XREF=UI-R-BJ1-avt-h-12-0-UI.s1 /CLONE=UI-R-BJ1-avt-h-12-0-UI /FEA=EST /CNT=23 /TID=Rn.3206.1 /TIER=Stack /STK=16 /UG=Rn.3206 /UG_TITLE=ESTs BE110607 similar to apoptosis related protein APR-3; p18 protein RGD1311605 298841 NM_001127526 1371808_at AI012747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012747 /DB_XREF=gi:3226579 /DB_XREF=EST207198 /CLONE=RPLBB18 /FEA=EST /CNT=21 /TID=Rn.4278.1 /TIER=Stack /STK=16 /UG=Rn.4278 /UG_TITLE=ESTs, Highly similar to BLMH RAT BLEOMYCIN HYDROLASE (R.norvegicus) AI012747 bleomycin hydrolase Blmh 287552 NM_001034163 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0009636 // response to toxin // inferred from electronic annotation /// 0009636 // response to toxin // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1371809_at BM389296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389296 /DB_XREF=gi:18189349 /DB_XREF=UI-R-DZ0-cko-h-08-0-UI.s1 /CLONE=UI-R-DZ0-cko-h-08-0-UI /FEA=EST /CNT=19 /TID=Rn.114.1 /TIER=Stack /STK=16 /UG=Rn.114 /UG_TITLE=ESTs, Weakly similar to T13H5.5.p (Caenorhabditis elegans) (C.elegans) BM389296 mitochondrial ribosomal protein S18B Mrps18b 294230 NM_212534 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1371810_at BF284093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284093 /DB_XREF=gi:11215163 /DB_XREF=EST448684 /CLONE=RGIEK88 /FEA=EST /CNT=19 /TID=Rn.36822.1 /TIER=Stack /STK=16 /UG=Rn.36822 /UG_TITLE=ESTs BF284093 Coatomer protein complex, subunit gamma Copg 297428 NM_001031822 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0048205 // COPI coating of Golgi vesicle // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005798 // Golgi-associated vesicle // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030126 // COPI vesicle coat // inferred from electronic annotation /// 0030663 // COPI coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371811_at BI278232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278232 /DB_XREF=gi:14924876 /DB_XREF=UI-R-CY0-bxr-a-09-0-UI.s1 /CLONE=UI-R-CY0-bxr-a-09-0-UI /FEA=EST /CNT=18 /TID=Rn.1392.1 /TIER=Stack /STK=16 /UG=Rn.1392 /UG_TITLE=ESTs, Weakly similar to T33304 hypothetical protein R01B10.5 - Caenorhabditis elegans (C.elegans) BI278232 Bernardinelli-Seip congenital lipodystrophy 2 homolog (human) Bscl2 361722 NM_001012171 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded /// 0030176 // integral to endoplasmic reticulum membrane // inferred from sequence or structural similarity 1371812_at BI284223 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284223 /DB_XREF=gi:14936711 /DB_XREF=UI-R-CX0s-ccn-f-07-0-UI.s1 /CLONE=UI-R-CX0s-ccn-f-07-0-UI /FEA=EST /CNT=17 /TID=Rn.11875.1 /TIER=Stack /STK=16 /UG=Rn.11875 /UG_TITLE=ESTs, Highly similar to T46344 hypothetical protein DKFZp434I1614.1 (H.sapiens) BI284223 P55 LOC362855 362855 NM_207614 0017166 // vinculin binding // inferred from electronic annotation /// 0017166 // vinculin binding // not recorded 1371813_at BI275598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275598 /DB_XREF=gi:14919666 /DB_XREF=UI-R-CW0-bwk-c-09-0-UI.s1 /CLONE=UI-R-CW0-bwk-c-09-0-UI /FEA=EST /CNT=17 /TID=Rn.12594.1 /TIER=Stack /STK=16 /UG=Rn.12594 /UG_TITLE=ESTs BI275598 HIRA interacting protein 3 Hirip3 361650 NM_001025725 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371814_at BI282191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282191 /DB_XREF=gi:14932706 /DB_XREF=UI-R-CU0s-cbx-f-10-0-UI.s1 /CLONE=UI-R-CU0s-cbx-f-10-0-UI /FEA=EST /CNT=17 /TID=Rn.37644.2 /TIER=Stack /STK=16 /UG=Rn.37644 /UG_TITLE=ESTs BI282191 ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast) Ube2g2 294331 NM_001106380 0030433 // ER-associated protein catabolic process // inferred from electronic annotation /// 0030433 // ER-associated protein catabolic process // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1371815_at BM386326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386326 /DB_XREF=gi:18186379 /DB_XREF=UI-R-CN1-cjf-l-03-0-UI.s1 /CLONE=UI-R-CN1-cjf-l-03-0-UI /FEA=EST /CNT=17 /TID=Rn.17012.1 /TIER=Stack /STK=16 /UG=Rn.17012 /UG_TITLE=ESTs, Highly similar to MICROFIBRIL-ASSOCIATED GLYCOPROTEIN PRECURSOR (M.musculus) BM386326 microfibrillar-associated protein 2 Mfap2 313662 NM_001107989 0001527 // microfibril // inferred from electronic annotation 1371816_at AI407560 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407560 /DB_XREF=gi:4251064 /DB_XREF=EST235850 /CLONE=ROVDZ12 /FEA=EST /CNT=17 /TID=Rn.6568.1 /TIER=Stack /STK=16 /UG=Rn.6568 /UG_TITLE=ESTs AI407560 zinc finger, CCHC domain containing 3 Zcchc3 690005 XM_001072887 /// XM_002726251 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371817_at BI285489 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285489 /DB_XREF=gi:14939180 /DB_XREF=UI-R-DD0-caa-g-03-0-UI.s1 /CLONE=UI-R-DD0-caa-g-03-0-UI /FEA=EST /CNT=17 /TID=Rn.37601.1 /TIER=Stack /STK=16 /UG=Rn.37601 /UG_TITLE=ESTs, Moderately similar to T46317 hypothetical protein DKFZp434A0612.1 (H.sapiens) BI285489 inositol-3-phosphate synthase 1 Isyna1 290651 NM_001013880 0006021 // inositol biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004512 // inositol-3-phosphate synthase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1371818_at AW251204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251204 /DB_XREF=gi:6594795 /DB_XREF=UI-R-BJ0-adf-d-06-0-UI.s1 /CLONE=UI-R-BJ0-adf-d-06-0-UI /FEA=EST /CNT=17 /TID=Rn.2238.1 /TIER=Stack /STK=16 /UG=Rn.2238 /UG_TITLE=ESTs AW251204 Exportin, tRNA (nuclear export receptor for tRNAs) Xpot 314879 NM_001108102 0006409 // tRNA export from nucleus // not recorded /// 0006886 // intracellular protein transport // inferred from electronic annotation 0005643 // nuclear pore // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded 0000049 // tRNA binding // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 1371819_at BF403027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403027 /DB_XREF=gi:11391002 /DB_XREF=UI-R-CA0-bhl-f-07-0-UI.s1 /CLONE=UI-R-CA0-bhl-f-07-0-UI /FEA=EST /CNT=17 /TID=Rn.18452.1 /TIER=Stack /STK=16 /UG=Rn.18452 /UG_TITLE=ESTs, Highly similar to HDA5_MOUSE HISTONE DEACETYLASE 5 (HD5) (HISTONE DEACETYLASE MHDA1) (M.musculus) BF403027 histone deacetylase 5 Hdac5 84580 NM_053450 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0002076 // osteoblast development // inferred from electronic annotation /// 0006325 // chromatin organization // traceable author statement /// 0006950 // response to stress // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016575 // histone deacetylation // non-traceable author statement /// 0042220 // response to cocaine // inferred from electronic annotation /// 0042493 // response to drug // inferred from direct assay /// 0045668 // negative regulation of osteoblast differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0048742 // regulation of skeletal muscle fiber development // inferred from electronic annotation /// 0051153 // regulation of striated muscle cell differentiation // inferred from electronic annotation /// 0071445 // cellular response to protein stimulus // inferred from expression pattern 0000118 // histone deacetylase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0016604 // nuclear body // inferred from electronic annotation 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0004407 // histone deacetylase activity // inferred from electronic annotation /// 0004407 // histone deacetylase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1371820_at BI282064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282064 /DB_XREF=gi:14932438 /DB_XREF=UI-R-CU0s-cbw-b-01-0-UI.s1 /CLONE=UI-R-CU0s-cbw-b-01-0-UI /FEA=EST /CNT=20 /TID=Rn.13022.1 /TIER=Stack /STK=16 /UG=Rn.13022 /UG_TITLE=ESTs BI282064 mesoderm development candidate 2 Mesdc2 308796 NM_001008345 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation 1371821_at BM391330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391330 /DB_XREF=gi:18191383 /DB_XREF=UI-R-DY0-ckq-p-15-0-UI.s1 /CLONE=UI-R-DY0-ckq-p-15-0-UI /FEA=EST /CNT=17 /TID=Rn.3856.1 /TIER=Stack /STK=16 /UG=Rn.3856 /UG_TITLE=ESTs BM391330 1371822_at BI275831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275831 /DB_XREF=gi:14920142 /DB_XREF=UI-R-CX0-bxh-b-01-0-UI.s1 /CLONE=UI-R-CX0-bxh-b-01-0-UI /FEA=EST /CNT=16 /TID=Rn.16896.1 /TIER=Stack /STK=16 /UG=Rn.16896 /UG_TITLE=ESTs BI275831 polymerase (RNA) III (DNA directed) polypeptide D Polr3d 306012 NM_001031653 0006383 // transcription from RNA polymerase III promoter // inferred from electronic annotation /// 0032728 // positive regulation of interferon-beta production // inferred from electronic annotation /// 0032728 // positive regulation of interferon-beta production // not recorded /// 0045089 // positive regulation of innate immune response // inferred from electronic annotation /// 0045089 // positive regulation of innate immune response // not recorded 0005666 // DNA-directed RNA polymerase III complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation 1371823_at BM392158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392158 /DB_XREF=gi:18192211 /DB_XREF=UI-R-DO1-ckp-g-06-0-UI.s1 /CLONE=UI-R-DO1-ckp-g-06-0-UI /FEA=EST /CNT=16 /TID=Rn.13676.1 /TIER=Stack /STK=16 /UG=Rn.13676 /UG_TITLE=ESTs BM392158 stromal antigen 2 Stag2 313304 NM_001173507 /// XM_001059059 /// XM_002727666 /// XM_002727667 /// XM_002730173 /// XM_002730174 /// XM_233108 0007062 // sister chromatid cohesion // not recorded /// 0032876 // negative regulation of DNA endoreduplication // not recorded 0000785 // chromatin // not recorded /// 0005634 // nucleus // not recorded /// 0015629 // actin cytoskeleton // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371824_at AA891949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891949 /DB_XREF=gi:3018828 /DB_XREF=EST195752 /CLONE=RKIAI92 /FEA=EST /CNT=16 /TID=Rn.1086.1 /TIER=Stack /STK=16 /UG=Rn.1086 /UG_TITLE=ESTs AA891949 adenylate kinase 3-like 1 Ak3l1 29223 NM_017135 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004017 // adenylate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016776 // phosphotransferase activity, phosphate group as acceptor // inferred from electronic annotation /// 0019201 // nucleotide kinase activity // inferred from electronic annotation /// 0019205 // nucleobase, nucleoside, nucleotide kinase activity // inferred from electronic annotation 1371825_at AI177058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177058 /DB_XREF=gi:3727696 /DB_XREF=EST220665 /CLONE=ROVCA30 /FEA=EST /CNT=16 /TID=Rn.16207.1 /TIER=Stack /STK=16 /UG=Rn.16207 /UG_TITLE=ESTs, Weakly similar to 2203399B proximal sequence element-binding transcription factor:ISOTYPE=delta (H.sapiens) AI177058 small nuclear RNA activating complex, polypeptide 2 Snapc2 304204 NM_001013121 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1371826_at BM390536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390536 /DB_XREF=gi:18190589 /DB_XREF=UI-R-CN1-cjr-c-13-0-UI.s1 /CLONE=UI-R-CN1-cjr-c-13-0-UI /FEA=EST /CNT=16 /TID=Rn.15171.1 /TIER=Stack /STK=16 /UG=Rn.15171 /UG_TITLE=ESTs BM390536 1371827_at AA946430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946430 /DB_XREF=gi:4132784 /DB_XREF=EST201929 /CLONE=ROVAR08 /FEA=EST /CNT=16 /TID=Rn.12612.1 /TIER=Stack /STK=16 /UG=Rn.12612 /UG_TITLE=ESTs AA946430 synovial apoptosis inhibitor 1, synoviolin Syvn1 361712 NM_001100739 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0030433 // ER-associated protein catabolic process // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005783 // endoplasmic reticulum // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1371828_at BM386571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386571 /DB_XREF=gi:18186624 /DB_XREF=UI-R-CN1-cjg-i-18-0-UI.s1 /CLONE=UI-R-CN1-cjg-i-18-0-UI /FEA=EST /CNT=16 /TID=Rn.7302.1 /TIER=Stack /STK=16 /UG=Rn.7302 /UG_TITLE=ESTs BM386571 similar to RIKEN cDNA 1500011H22 RGD1310861 288667 NM_001008290 1371829_at BG371822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371822 /DB_XREF=gi:13268359 /DB_XREF=UI-R-CV0-bri-g-02-0-UI.s1 /CLONE=UI-R-CV0-bri-g-02-0-UI /FEA=EST /CNT=16 /TID=Rn.19691.1 /TIER=Stack /STK=16 /UG=Rn.19691 /UG_TITLE=ESTs BG371822 neural retina leucine zipper Nrl 290221 NM_001106036 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007468 // regulation of rhodopsin gene expression // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045872 // positive regulation of rhodopsin gene expression // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046548 // retinal rod cell development // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1371830_at BM986263 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM986263 /DB_XREF=gi:19705652 /DB_XREF=EST531717 /CLONE=RGIAD12 /FEA=EST /CNT=16 /TID=Rn.9014.1 /TIER=Stack /STK=16 /UG=Rn.9014 /UG_TITLE=ESTs, Highly similar to similar to human Sua1 (M.musculus) BM986263 SUMO1 activating enzyme subunit 1 Sae1 308384 NM_001012063 0006464 // protein modification process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016925 // protein sumoylation // not recorded /// 0016925 // protein sumoylation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008641 // small protein activating enzyme activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019948 // SUMO activating enzyme activity // not recorded /// 0019948 // SUMO activating enzyme activity // inferred from sequence or structural similarity /// 0043008 // ATP-dependent protein binding // inferred from electronic annotation /// 0043008 // ATP-dependent protein binding // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1371831_at BI300358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300358 /DB_XREF=gi:14976638 /DB_XREF=UI-R-CV2-cie-a-09-0-UI.s1 /CLONE=UI-R-CV2-cie-a-09-0-UI /FEA=EST /CNT=16 /TID=Rn.66182.1 /TIER=Stack /STK=16 /UG=Rn.66182 /UG_TITLE=ESTs BI300358 1371832_at AW526333 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526333 /DB_XREF=gi:7168718 /DB_XREF=UI-R-BO1-ajb-a-01-0-UI.s1 /CLONE=UI-R-BO1-ajb-a-01-0-UI /FEA=EST /CNT=16 /TID=Rn.43195.1 /TIER=Stack /STK=16 /UG=Rn.43195 /UG_TITLE=ESTs AW526333 Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) Leo1 300837 NM_001005548 0006350 // transcription // inferred from electronic annotation /// 0010390 // histone monoubiquitination // inferred from electronic annotation /// 0010390 // histone monoubiquitination // not recorded /// 0033523 // histone H2B ubiquitination // inferred from electronic annotation /// 0033523 // histone H2B ubiquitination // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0016593 // Cdc73/Paf1 complex // inferred from electronic annotation /// 0016593 // Cdc73/Paf1 complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371833_at AI230753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230753 /DB_XREF=gi:3814640 /DB_XREF=EST227448 /CLONE=REMDA79 /FEA=EST /CNT=32 /TID=Rn.7700.1 /TIER=Stack /STK=15 /UG=Rn.7700 /UG_TITLE=ESTs, Highly similar to BI3 MOUSE BRAIN PROTEIN I3 (M.musculus) AI230753 brain protein I3 Bri3 304284 NM_001009604 0006164 // purine nucleotide biosynthetic process // inferred from electronic annotation /// 0009113 // purine base biosynthetic process // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from direct assay /// 0010035 // response to inorganic substance // inferred from direct assay /// 0048513 // organ development // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004637 // phosphoribosylamine-glycine ligase activity // inferred from electronic annotation /// 0004644 // phosphoribosylglycinamide formyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1371834_at BF283695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283695 /DB_XREF=gi:11214765 /DB_XREF=EST448286 /CLONE=RGIEF57 /FEA=EST /CNT=32 /TID=Rn.2571.1 /TIER=Stack /STK=15 /UG=Rn.2571 /UG_TITLE=ESTs, Highly similar to DYNC_HUMAN DYNACTIN, 50 KD ISOFORM (H.sapiens) BF283695 dynactin 2 Dctn2 299850 NM_001004239 0007017 // microtubule-based process // inferred from electronic annotation /// 0007052 // mitotic spindle organization // inferred from direct assay /// 0007067 // mitosis // inferred from direct assay /// 0007067 // mitosis // not recorded /// 0007067 // mitosis // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded 0000776 // kinetochore // inferred from direct assay /// 0000776 // kinetochore // not recorded /// 0000776 // kinetochore // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005869 // dynactin complex // inferred from direct assay /// 0005869 // dynactin complex // not recorded /// 0005869 // dynactin complex // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030286 // dynein complex // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0030426 // growth cone // not recorded 0003774 // motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371835_at AI411907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411907 /DB_XREF=gi:4255411 /DB_XREF=EST240201 /CLONE=RKIER06 /FEA=EST /CNT=30 /TID=Rn.3502.1 /TIER=Stack /STK=15 /UG=Rn.3502 /UG_TITLE=ESTs AI411907 1371836_at H35233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H35233 /DB_XREF=gi:980650 /DB_XREF=EST109051 /CLONE=RPNAK36 /FEA=EST /CNT=31 /TID=Rn.3548.1 /TIER=Stack /STK=15 /UG=Rn.3548 /UG_TITLE=ESTs, Weakly similar to GTPase Rab14 (Rattus norvegicus) (R.norvegicus) H35233 RAB5C, member RAS oncogene family Rab5c 287709 NM_001105840 0007032 // endosome organization // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0030100 // regulation of endocytosis // not recorded 0030139 // endocytic vesicle // not recorded /// 0031410 // cytoplasmic vesicle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1371837_at AA851926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851926 /DB_XREF=gi:2939466 /DB_XREF=EST194695 /CLONE=RSPAO44 /FEA=EST /CNT=30 /TID=Rn.2437.1 /TIER=Stack /STK=15 /UG=Rn.2437 /UG_TITLE=ESTs, Weakly similar to A57514 RNA helicase HEL117 - rat (R.norvegicus) AA851926 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 Ddx5 287765 NM_001007613 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003712 // transcription cofactor activity // inferred from electronic annotation /// 0003712 // transcription cofactor activity // not recorded /// 0003724 // RNA helicase activity // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation 1371838_at AI411155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411155 /DB_XREF=gi:4254659 /DB_XREF=EST239449 /CLONE=RKIET90 /FEA=EST /CNT=35 /TID=Rn.2951.1 /TIER=Stack /STK=15 /UG=Rn.2951 /UG_TITLE=ESTs, Highly similar to SFR2_MOUSE Splicing factor, arginineserine-rich 2 (Splicing factor SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (M.musculus) AI411155 splicing factor, arginine/serine-rich 2 Sfrs2 494445 NM_001009720 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005681 // spliceosomal complex // not recorded /// 0016605 // PML body // not recorded /// 0016607 // nuclear speck // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371839_at AA819369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819369 /DB_XREF=gi:4228507 /DB_XREF=UI-R-A0-bk-f-09-0-UI.s1 /CLONE=UI-R-A0-bk-f-09-0-UI /FEA=EST /CNT=35 /TID=Rn.2951.1 /TIER=Stack /STK=6 /UG=Rn.2951 /UG_TITLE=ESTs, Highly similar to SFR2_MOUSE Splicing factor, arginineserine-rich 2 (Splicing factor SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (M.musculus) AA819369 splicing factor, arginine/serine-rich 2 Sfrs2 494445 NM_001009720 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005681 // spliceosomal complex // not recorded /// 0016605 // PML body // not recorded /// 0016607 // nuclear speck // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371840_at BI295971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295971 /DB_XREF=gi:14959950 /DB_XREF=UI-R-DK0-cfc-h-07-0-UI.s1 /CLONE=UI-R-DK0-cfc-h-07-0-UI /FEA=EST /CNT=28 /TID=Rn.4102.2 /TIER=Stack /STK=15 /UG=Rn.4102 /LL=29733 /UG_GENE=Edg1 /UG_TITLE=endothelial differentiation sphingolipid G-protein-coupled receptor 1 BI295971 sphingosine-1-phosphate receptor 1 S1pr1 29733 NM_017301 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // traceable author statement /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // inferred from mutant phenotype /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0019226 // transmission of nerve impulse // inferred from expression pattern /// 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0030155 // regulation of cell adhesion // not recorded /// 0030182 // neuron differentiation // inferred from expression pattern /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0032320 // positive regulation of Ras GTPase activity // inferred from direct assay /// 0045446 // endothelial cell differentiation // inferred from expression pattern /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from direct assay /// 0050927 // positive regulation of positive chemotaxis // inferred from direct assay /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // inferred from mutant phenotype /// 0051497 // negative regulation of stress fiber assembly // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001619 // lysosphingolipid and lysophosphatidic acid receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from mutant phenotype /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0046625 // sphingolipid binding // inferred from direct assay 1371841_at AI228667 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228667 /DB_XREF=gi:3812554 /DB_XREF=EST225362 /CLONE=RBRCX83 /FEA=EST /CNT=25 /TID=Rn.3239.1 /TIER=Stack /STK=15 /UG=Rn.3239 /UG_TITLE=ESTs, Moderately similar to V1P MOUSE MYOTROPHIN (R.norvegicus) AI228667 myotrophin Mtpn 79215 NM_024374 0006584 // catecholamine metabolic process // inferred from expression pattern /// 0021707 // cerebellar granule cell differentiation // inferred from expression pattern /// 0030182 // neuron differentiation // non-traceable author statement /// 0043403 // skeletal muscle tissue regeneration // inferred from expression pattern /// 0051146 // striated muscle cell differentiation // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1371842_at AI227747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227747 /DB_XREF=gi:3811634 /DB_XREF=EST224442 /CLONE=RBRCK94 /FEA=EST /CNT=29 /TID=Rn.25134.1 /TIER=Stack /STK=15 /UG=Rn.25134 /UG_TITLE=ESTs AI227747 zinc finger, matrin type 2 Zmat2 679898 NM_001135582 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1371843_at AI234128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234128 /DB_XREF=gi:3818008 /DB_XREF=EST230816 /CLONE=RLUCV54 /FEA=EST /CNT=22 /TID=Rn.7575.1 /TIER=Stack /STK=15 /UG=Rn.7575 /UG_TITLE=ESTs AI234128 Yip1 domain family, member 5 Yipf5 361315 NM_001014150 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030134 // ER to Golgi transport vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0042175 // nuclear membrane-endoplasmic reticulum network // not recorded 1371844_at AW144530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144530 /DB_XREF=gi:6164429 /DB_XREF=EST294907 /CLONE=RGIAU11 /FEA=EST /CNT=26 /TID=Rn.17493.1 /TIER=Stack /STK=15 /UG=Rn.17493 /UG_TITLE=ESTs, Highly similar to SAH2_HUMAN PUTATIVE ADENOSYLHOMOCYSTEINASE (H.sapiens) AW144530 adenosylhomocysteinase-like 1 Ahcyl1 362013 NM_001108561 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004013 // adenosylhomocysteinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1371845_at BF287209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287209 /DB_XREF=gi:11218265 /DB_XREF=EST451786 /CLONE=RGIFZ94 /FEA=EST /CNT=24 /TID=Rn.3013.1 /TIER=Stack /STK=15 /UG=Rn.3013 /UG_TITLE=ESTs, Moderately similar to RP29_HUMAN RIBONUCLEASE P PROTEIN SUBUNIT P29 (H.sapiens) BF287209 processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae) Pop4 292831 NM_001009642 0006364 // rRNA processing // inferred from electronic annotation /// 0006379 // mRNA cleavage // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation 0000172 // ribonuclease MRP complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005655 // nucleolar ribonuclease P complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0030677 // ribonuclease P complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0004526 // ribonuclease P activity // inferred from electronic annotation /// 0004540 // ribonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1371846_at BM391894 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391894 /DB_XREF=gi:18191947 /DB_XREF=UI-R-DO1-cmk-p-14-0-UI.s1 /CLONE=UI-R-DO1-cmk-p-14-0-UI /FEA=EST /CNT=21 /TID=Rn.2539.1 /TIER=Stack /STK=15 /UG=Rn.2539 /UG_TITLE=ESTs BM391894 UBA domain containing 2 Ubac2 361094 NM_001034937 1371847_at BI274357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274357 /DB_XREF=gi:14885212 /DB_XREF=UI-R-CW0-bwh-h-12-0-UI.s1 /CLONE=UI-R-CW0-bwh-h-12-0-UI /FEA=EST /CNT=21 /TID=Rn.37819.1 /TIER=Stack /STK=15 /UG=Rn.37819 /UG_TITLE=ESTs, Moderately similar to FINC RAT FIBRONECTIN PRECURSOR (R.norvegicus) BI274357 cartilage associated protein Crtap 363158 NM_001108785 0007283 // spermatogenesis // not recorded 0005488 // binding // inferred from electronic annotation 1371848_at AA799526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799526 /DB_XREF=gi:2862481 /DB_XREF=EST189023 /CLONE=RHEAC15 /FEA=EST /CNT=24 /TID=Rn.6351.1 /TIER=Stack /STK=15 /UG=Rn.6351 /UG_TITLE=ESTs, Highly similar to RIKEN cDNA 1700043E15 (Mus musculus) (M.musculus) AA799526 similar to small nuclear ribonucleoprotein D3 LOC687711 687711 XM_001079870 1371849_at BI285551 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285551 /DB_XREF=gi:14939311 /DB_XREF=UI-R-CW0s-ccb-d-12-0-UI.s1 /CLONE=UI-R-CW0s-ccb-d-12-0-UI /FEA=EST /CNT=23 /TID=Rn.2956.1 /TIER=Stack /STK=15 /UG=Rn.2956 /UG_TITLE=ESTs, Highly similar to Unknown (H.sapiens) BI285551 5'-nucleotidase domain containing 2 Nt5dc2 290558 NM_001009271 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371850_at AA892829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892829 /DB_XREF=gi:3019708 /DB_XREF=EST196632 /CLONE=RKIAX76 /FEA=EST /CNT=23 /TID=Rn.3507.1 /TIER=Stack /STK=15 /UG=Rn.3507 /UG_TITLE=ESTs, Highly similar to ATP sulfurylaseAPS kinase (M.musculus) AA892829 3'-phosphoadenosine 5'-phosphosulfate synthase 1 Papss1 295443 NM_001106471 0000103 // sulfate assimilation // inferred from electronic annotation 0004020 // adenylylsulfate kinase activity // inferred from electronic annotation /// 0004781 // sulfate adenylyltransferase (ATP) activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation 1371851_at BM383811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383811 /DB_XREF=gi:18183864 /DB_XREF=UI-R-DM1-ckb-l-15-0-UI.s1 /CLONE=UI-R-DM1-ckb-l-15-0-UI /FEA=EST /CNT=21 /TID=Rn.12411.1 /TIER=Stack /STK=15 /UG=Rn.12411 /UG_TITLE=ESTs, Weakly similar to G PROTEIN PATHWAY SUPPRESSOR 1 (R.norvegicus) BM383811 proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 Psmd6 289924 NM_198730 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation 0005515 // protein binding // not recorded 1371852_at BF284744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284744 /DB_XREF=gi:11215814 /DB_XREF=EST449335 /CLONE=RGIEV67 /FEA=EST /CNT=20 /TID=Rn.36116.2 /TIER=Stack /STK=15 /UG=Rn.36116 /UG_TITLE=Rattus norvegicus membrane- and microfilament-associated protein p58 mRNA, complete cds BF284744 1371853_at AI176602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176602 /DB_XREF=gi:3727240 /DB_XREF=EST220191 /CLONE=ROVBU40 /FEA=EST /CNT=20 /TID=Rn.11.1 /TIER=Stack /STK=15 /UG=Rn.11 /UG_TITLE=ESTs, Moderately similar to PTD007 (H.sapiens) AI176602 mitochondrial ribosomal protein L42 Mrpl42 299743 NM_001106782 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005763 // mitochondrial small ribosomal subunit // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 1371854_at BG374451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374451 /DB_XREF=gi:13298923 /DB_XREF=UI-R-CV1-bsp-e-10-0-UI.s1 /CLONE=UI-R-CV1-bsp-e-10-0-UI /FEA=EST /CNT=20 /TID=Rn.8506.1 /TIER=Stack /STK=15 /UG=Rn.8506 /UG_TITLE=ESTs BG374451 1371855_at BM390254 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390254 /DB_XREF=gi:18190307 /DB_XREF=UI-R-CN1-cjq-m-11-0-UI.s1 /CLONE=UI-R-CN1-cjq-m-11-0-UI /FEA=EST /CNT=23 /TID=Rn.11958.1 /TIER=Stack /STK=15 /UG=Rn.11958 /UG_TITLE=ESTs BM390254 1371856_at AI408941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408941 /DB_XREF=gi:4252445 /DB_XREF=EST237232 /CLONE=RKIDR54 /FEA=EST /CNT=22 /TID=Rn.3995.1 /TIER=Stack /STK=15 /UG=Rn.3995 /UG_TITLE=ESTs AI408941 proline-rich nuclear receptor coactivator 2 Pnrc2 100125373 NM_001103360 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from sequence or structural similarity /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0000932 // cytoplasmic mRNA processing body // inferred from sequence or structural similarity /// 0000932 // cytoplasmic mRNA processing body // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 1371857_at AI010108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010108 /DB_XREF=gi:4133164 /DB_XREF=EST204559 /CLONE=RLUBT83 /FEA=EST /CNT=22 /TID=Rn.31075.1 /TIER=Stack /STK=15 /UG=Rn.31075 /UG_TITLE=ESTs AI010108 potassium channel tetramerization domain containing 10 Kctd10 494521 NM_001009973 0006813 // potassium ion transport // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from sequence or structural similarity /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031463 // Cul3-RING ubiquitin ligase complex // inferred from sequence or structural similarity 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1371858_at BM385719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385719 /DB_XREF=gi:18185772 /DB_XREF=UI-R-CN1-clx-k-08-0-UI.s1 /CLONE=UI-R-CN1-clx-k-08-0-UI /FEA=EST /CNT=22 /TID=Rn.11795.1 /TIER=Stack /STK=15 /UG=Rn.11795 /UG_TITLE=ESTs BM385719 adaptor-related protein complex 1, sigma 1 subunit Ap1s1 360785 NM_001108331 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0009615 // response to virus // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005829 // cytosol // not recorded /// 0030117 // membrane coat // inferred from electronic annotation /// 0030130 // clathrin coat of trans-Golgi network vesicle // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation 1371859_at D86655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D86655 /DB_XREF=gi:1549159 /DB_XREF=D86655 /FEA=EST /CNT=21 /TID=Rn.3893.1 /TIER=Stack /STK=15 /UG=Rn.3893 /UG_TITLE=ESTs D86655 polymerase (DNA-directed), delta interacting protein 3 Poldip3 315170 NM_001130506 0045727 // positive regulation of translation // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded /// 0035145 // exon-exon junction complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371860_at AA944016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944016 /DB_XREF=gi:3103932 /DB_XREF=EST199515 /CLONE=REMAA37 /FEA=EST /CNT=20 /TID=Rn.1896.1 /TIER=Stack /STK=15 /UG=Rn.1896 /UG_TITLE=ESTs AA944016 Vps20-associated 1 homolog (S. cerevisiae) Vta1 292640 NM_001025640 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded 1371861_at BE117558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117558 /DB_XREF=gi:8509663 /DB_XREF=UI-R-BS1-ayk-c-05-0-UI.s1 /CLONE=UI-R-BS1-ayk-c-05-0-UI /FEA=EST /CNT=20 /TID=Rn.19802.1 /TIER=Stack /STK=15 /UG=Rn.19802 /UG_TITLE=ESTs, Moderately similar to T13963 formin related protein, lymphocyte specific - mouse (M.musculus) BE117558 1371862_at AI412015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412015 /DB_XREF=gi:4255519 /DB_XREF=EST240309 /CLONE=RKIEJ47 /FEA=EST /CNT=19 /TID=Rn.22094.1 /TIER=Stack /STK=15 /UG=Rn.22094 /UG_TITLE=ESTs, Highly similar to A24050 ribonucleoside-diphosphate reductase (M.musculus) AI412015 ribonucleotide reductase M1 Rrm1 685579 NM_001013236 0006260 // DNA replication // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005971 // ribonucleoside-diphosphate reductase complex // inferred from electronic annotation 0004748 // ribonucleoside-diphosphate reductase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1371863_at BM387059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387059 /DB_XREF=gi:18187112 /DB_XREF=UI-R-CN1-cji-e-16-0-UI.s1 /CLONE=UI-R-CN1-cji-e-16-0-UI /FEA=EST /CNT=19 /TID=Rn.16553.1 /TIER=Stack /STK=15 /UG=Rn.16553 /UG_TITLE=ESTs, Moderately similar to T34558 hypothetical protein DKFZp434H2450.1 (H.sapiens) BM387059 phosphatidylglycerophosphate synthase 1 Pgs1 303698 XM_001081747 /// XM_221142 0008152 // metabolic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0016780 // phosphotransferase activity, for other substituted phosphate groups // inferred from electronic annotation 1371864_at AW524563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524563 /DB_XREF=gi:7166948 /DB_XREF=UI-R-BO0-ahz-h-04-0-UI.s1 /CLONE=UI-R-BO0-ahz-h-04-0-UI /FEA=EST /CNT=19 /TID=Rn.8199.1 /TIER=Stack /STK=15 /UG=Rn.8199 /UG_TITLE=ESTs AW524563 1371865_at BI283821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283821 /DB_XREF=gi:14935941 /DB_XREF=UI-R-CX0s-ccx-b-01-0-UI.s1 /CLONE=UI-R-CX0s-ccx-b-01-0-UI /FEA=EST /CNT=19 /TID=Rn.2282.1 /TIER=Stack /STK=15 /UG=Rn.2282 /UG_TITLE=ESTs BI283821 transmembrane protein 111 Tmem111 312640 NM_001008355 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1371866_at BM389317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389317 /DB_XREF=gi:18189370 /DB_XREF=UI-R-DZ0-cko-l-06-0-UI.s1 /CLONE=UI-R-DZ0-cko-l-06-0-UI /FEA=EST /CNT=19 /TID=Rn.920.1 /TIER=Stack /STK=15 /UG=Rn.920 /UG_TITLE=ESTs BM389317 similar to myosin XVIIIa LOC360570 360570 NM_001172137 /// XM_001080824 /// XM_002724521 /// XM_002727778 0016459 // myosin complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1371867_at BE120836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120836 /DB_XREF=gi:8512941 /DB_XREF=UI-R-BS1-azt-a-11-0-UI.s1 /CLONE=UI-R-BS1-azt-a-11-0-UI /FEA=EST /CNT=19 /TID=Rn.2914.1 /TIER=Stack /STK=15 /UG=Rn.2914 /UG_TITLE=ESTs BE120836 1371868_at AA851386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851386 /DB_XREF=gi:2938926 /DB_XREF=EST194154 /CLONE=RPLAF96 /FEA=EST /CNT=19 /TID=Rn.1225.1 /TIER=Stack /STK=15 /UG=Rn.1225 /UG_TITLE=ESTs, Weakly similar to T12A2.7.p (Caenorhabditis elegans) (C.elegans) AA851386 breast carcinoma amplified sequence 2 Bcas2 295334 NM_001106458 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371869_at BF282262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282262 /DB_XREF=gi:11213433 /DB_XREF=EST446954 /CLONE=RGIDM62 /FEA=EST /CNT=31 /TID=Rn.19891.1 /TIER=Stack /STK=15 /UG=Rn.19891 /UG_TITLE=ESTs, Highly similar to PROTEASOME SUBUNIT RC6-1 (R.norvegicus) BF282262 proteasome (prosome, macropain) subunit, alpha type 7 Psma7 29674 NM_001008217 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005839 // proteasome core complex // inferred from electronic annotation /// 0019773 // proteasome core complex, alpha-subunit complex // inferred from electronic annotation 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1371870_at AI169493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169493 /DB_XREF=gi:3705801 /DB_XREF=EST215352 /CLONE=RKIBT13 /FEA=EST /CNT=24 /TID=Rn.7782.1 /TIER=Stack /STK=15 /UG=Rn.7782 /UG_TITLE=ESTs, Moderately similar to KBRT beta-casein precursor - rat (R.norvegicus) AI169493 1371871_at AI409731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409731 /DB_XREF=gi:4253235 /DB_XREF=EST238023 /CLONE=RPLDJ05 /FEA=EST /CNT=23 /TID=Rn.9593.1 /TIER=Stack /STK=15 /UG=Rn.9593 /UG_TITLE=ESTs AI409731 RAB12, member RAS oncogene family Rab12 25530 NM_013017 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation 1371872_at BE108905 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108905 /DB_XREF=gi:8501010 /DB_XREF=UI-R-BS1-ayz-g-04-0-UI.s1 /CLONE=UI-R-BS1-ayz-g-04-0-UI /FEA=EST /CNT=20 /TID=Rn.818.1 /TIER=Stack /STK=15 /UG=Rn.818 /UG_TITLE=ESTs BE108905 Nucleosome assembly protein 1-like 1 Nap1l1 89825 NM_053561 0006334 // nucleosome assembly // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0005515 // protein binding // not recorded 1371873_at AA850735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850735 /DB_XREF=gi:4131880 /DB_XREF=EST193503 /CLONE=ROVAK18 /FEA=EST /CNT=20 /TID=Rn.4268.1 /TIER=Stack /STK=15 /UG=Rn.4268 /UG_TITLE=ESTs AA850735 Acidic (leucine-rich) nuclear phosphoprotein 32 family, member E Anp32e 361999 NM_001013200 0050790 // regulation of catalytic activity // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0019212 // phosphatase inhibitor activity // not recorded 1371874_at AI175026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175026 /DB_XREF=gi:3725664 /DB_XREF=EST218544 /CLONE=RMUCB23 /FEA=EST /CNT=20 /TID=Rn.3854.1 /TIER=Stack /STK=15 /UG=Rn.3854 /UG_TITLE=ESTs, Weakly similar to UBP4 MOUSE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4 (M.musculus) AI175026 ubiquitin specific peptidase 19 Usp19 361190 NM_001001516 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371875_at BM388852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388852 /DB_XREF=gi:18188905 /DB_XREF=UI-R-DZ0-ckn-g-22-0-UI.s1 /CLONE=UI-R-DZ0-ckn-g-22-0-UI /FEA=EST /CNT=18 /TID=Rn.7317.1 /TIER=Stack /STK=15 /UG=Rn.7317 /UG_TITLE=ESTs BM388852 mannosidase, beta A, lysosomal Manba 310864 NM_001031655 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006516 // glycoprotein catabolic process // inferred from electronic annotation /// 0006516 // glycoprotein catabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004567 // beta-mannosidase activity // inferred from direct assay /// 0004567 // beta-mannosidase activity // not recorded /// 0004567 // beta-mannosidase activity // inferred from electronic annotation /// 0005537 // mannose binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation 1371876_at BM387084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387084 /DB_XREF=gi:18187137 /DB_XREF=UI-R-CN1-cji-i-22-0-UI.s1 /CLONE=UI-R-CN1-cji-i-22-0-UI /FEA=EST /CNT=18 /TID=Rn.12660.1 /TIER=Stack /STK=15 /UG=Rn.12660 /UG_TITLE=ESTs BM387084 proteasome (prosome, macropain) assembly chaperone 2 Psmg2 291539 NM_001106138 0006915 // apoptosis // not recorded /// 0007094 // mitotic cell cycle spindle assembly checkpoint // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0043248 // proteasome assembly // not recorded /// 0051726 // regulation of cell cycle // not recorded 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1371877_at BM391502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391502 /DB_XREF=gi:18191555 /DB_XREF=UI-R-DY0-ckr-e-08-0-UI.s1 /CLONE=UI-R-DY0-ckr-e-08-0-UI /FEA=EST /CNT=18 /TID=Rn.15447.1 /TIER=Stack /STK=15 /UG=Rn.15447 /UG_TITLE=ESTs BM391502 dexamethasone-induced transcript Dexi 497857 NM_001109026 1371878_at BI294787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294787 /DB_XREF=gi:14957582 /DB_XREF=UI-R-DK0-cec-b-06-0-UI.s1 /CLONE=UI-R-DK0-cec-b-06-0-UI /FEA=EST /CNT=18 /TID=Rn.2394.1 /TIER=Stack /STK=15 /UG=Rn.2394 /UG_TITLE=ESTs BI294787 mastermind like 1 (Drosophila) Maml1 303101 NM_001106997 0007219 // Notch signaling pathway // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded 0003713 // transcription coactivator activity // not recorded /// 0005515 // protein binding // not recorded /// 0019901 // protein kinase binding // not recorded /// 0042605 // peptide antigen binding // not recorded 1371879_at BE110542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110542 /DB_XREF=gi:8502647 /DB_XREF=UI-R-BJ1-avt-c-03-0-UI.s1 /CLONE=UI-R-BJ1-avt-c-03-0-UI /FEA=EST /CNT=18 /TID=Rn.8675.1 /TIER=Stack /STK=15 /UG=Rn.8675 /UG_TITLE=ESTs BE110542 leucine rich repeat containing 42 Lrrc42 298309 NM_001025653 1371880_at AI179662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179662 /DB_XREF=gi:3730300 /DB_XREF=EST223387 /CLONE=RSPCK18 /FEA=EST /CNT=18 /TID=Rn.12366.1 /TIER=Stack /STK=15 /UG=Rn.12366 /UG_TITLE=ESTs, Highly similar to S25287 Sp1 protein - rat (R.norvegicus) AI179662 Sp1 transcription factor Sp1 24790 NM_012655 0001503 // ossification // inferred from electronic annotation /// 0001503 // ossification // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001829 // trophectodermal cell differentiation // inferred from electronic annotation /// 0001829 // trophectodermal cell differentiation // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0001892 // embryonic placenta development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0030219 // megakaryocyte differentiation // inferred from electronic annotation /// 0030219 // megakaryocyte differentiation // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0043353 // enucleate erythrocyte differentiation // inferred from electronic annotation /// 0043353 // enucleate erythrocyte differentiation // not recorded /// 0043923 // positive regulation by host of viral transcription // inferred from electronic annotation /// 0043923 // positive regulation by host of viral transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045817 // positive regulation of transcription from RNA polymerase II promoter, global // inferred from electronic annotation /// 0045817 // positive regulation of transcription from RNA polymerase II promoter, global // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048596 // embryonic camera-type eye morphogenesis // inferred from electronic annotation /// 0048596 // embryonic camera-type eye morphogenesis // not recorded /// 0048706 // embryonic skeletal system development // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // not recorded /// 0060136 // embryonic process involved in female pregnancy // inferred from electronic annotation /// 0060136 // embryonic process involved in female pregnancy // not recorded /// 0060216 // definitive hemopoiesis // inferred from electronic annotation /// 0060216 // definitive hemopoiesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0032993 // protein-DNA complex // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // not recorded /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0035035 // histone acetyltransferase binding // inferred from physical interaction /// 0035326 // enhancer binding // inferred from electronic annotation /// 0035326 // enhancer binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371881_at AI229455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229455 /DB_XREF=gi:3813342 /DB_XREF=EST226150 /CLONE=REMCG59 /FEA=EST /CNT=18 /TID=Rn.18470.1 /TIER=Stack /STK=15 /UG=Rn.18470 /UG_TITLE=ESTs AI229455 zinc finger, HIT type 2 Znhit2 309177 NM_001107574 1371882_a_at AI104139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104139 /DB_XREF=gi:3708544 /DB_XREF=EST213428 /CLONE=RHEBX72 /FEA=EST /CNT=18 /TID=Rn.11069.3 /TIER=Stack /STK=15 /UG=Rn.11069 /LL=89817 /UG_GENE=Sh2bpsm1 /UG_TITLE=SH2-B PH domain containing signaling mediator 1 AI104139 SH2-B PH domain containing signaling mediator 1 Sh2bpsm1 89817 NM_001048180 /// NM_134456 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation 1371883_at BG376037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376037 /DB_XREF=gi:13300509 /DB_XREF=UI-R-CS0-bts-g-02-0-UI.s1 /CLONE=UI-R-CS0-bts-g-02-0-UI /FEA=EST /CNT=24 /TID=Rn.34134.4 /TIER=Stack /STK=15 /UG=Rn.34134 /LL=29483 /UG_GENE=Slc1a3 /UG_TITLE=solute carrier family 1, member 3 BG376037 monocyte to macrophage differentiation-associated Mmd 303439 NM_001007673 0019835 // cytolysis // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1371884_at AI009909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009909 /DB_XREF=gi:3223741 /DB_XREF=EST204360 /CLONE=RLUBQ62 /FEA=EST /CNT=24 /TID=Rn.17501.1 /TIER=Stack /STK=15 /UG=Rn.17501 /UG_TITLE=ESTs AI009909 tetratricopeptide repeat domain 3 Ttc3 360702 NM_001108315 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0010771 // negative regulation of cell morphogenesis involved in differentiation // not recorded /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0051789 // response to protein stimulus // not recorded /// 0070936 // protein K48-linked ubiquitination // not recorded 0005634 // nucleus // not recorded /// 0005773 // vacuole // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371885_at BI282366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282366 /DB_XREF=gi:14933062 /DB_XREF=UI-R-CU0s-cbz-g-12-0-UI.s1 /CLONE=UI-R-CU0s-cbz-g-12-0-UI /FEA=EST /CNT=22 /TID=Rn.9550.1 /TIER=Stack /STK=15 /UG=Rn.9550 /UG_TITLE=ESTs, Weakly similar to dynactin 1 (Rattus norvegicus) (R.norvegicus) BI282366 tubulin folding cofactor B Tbcb 292777 NM_001040180 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1371886_at AI411979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411979 /DB_XREF=gi:4255483 /DB_XREF=EST240273 /CLONE=RKIEJ12 /FEA=EST /CNT=21 /TID=Rn.6249.1 /TIER=Stack /STK=15 /UG=Rn.6249 /UG_TITLE=ESTs, Weakly similar to CHOLINE O-ACETYLTRANSFERASE (R.norvegicus) AI411979 carnitine acetyltransferase Crat 311849 NM_001004085 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from direct assay /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0033540 // fatty acid beta-oxidation using acyl-CoA oxidase // not recorded 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005777 // peroxisome // traceable author statement /// 0005777 // peroxisome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004092 // carnitine O-acetyltransferase activity // inferred from direct assay /// 0004092 // carnitine O-acetyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1371887_at BF398549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398549 /DB_XREF=gi:11383542 /DB_XREF=UI-R-BS2-beq-b-03-0-UI.s1 /CLONE=UI-R-BS2-beq-b-03-0-UI /FEA=EST /CNT=20 /TID=Rn.13669.1 /TIER=Stack /STK=15 /UG=Rn.13669 /UG_TITLE=ESTs BF398549 high mobility group box 3 Hmgb3 305373 NM_001173341 /// XM_001067329 /// XM_002727293 /// XM_002730310 /// XM_223440 0045578 // negative regulation of B cell differentiation // not recorded /// 0045638 // negative regulation of myeloid cell differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation 1371888_at AA892843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892843 /DB_XREF=gi:3019722 /DB_XREF=EST196646 /CLONE=RKIAX91 /FEA=EST /CNT=20 /TID=Rn.3728.1 /TIER=Stack /STK=15 /UG=Rn.3728 /UG_TITLE=ESTs, Weakly similar to F59A3.3.p (Caenorhabditis elegans) (C.elegans) AA892843 mitochondrial ribosomal protein L24 mrpl24 295224 NM_001007637 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1371889_at AW915448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915448 /DB_XREF=gi:8081144 /DB_XREF=EST346752 /CLONE=RGICV52 /FEA=EST /CNT=20 /TID=Rn.7312.1 /TIER=Stack /STK=15 /UG=Rn.7312 /UG_TITLE=ESTs AW915448 solute carrier family 22, member 17 Slc22a17 305886 NM_177421 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006826 // iron ion transport // inferred from electronic annotation /// 0015892 // siderophore-iron transport // not recorded /// 0015892 // siderophore-iron transport // inferred from sequence or structural similarity /// 0055085 // transmembrane transport // inferred from electronic annotation 0005773 // vacuole // inferred from electronic annotation /// 0005774 // vacuolar membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031301 // integral to organelle membrane // not recorded /// 0031301 // integral to organelle membrane // inferred from sequence or structural similarity 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // not recorded /// 0004888 // transmembrane receptor activity // inferred from sequence or structural similarity /// 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371890_at AI172033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172033 /DB_XREF=gi:4134695 /DB_XREF=EST218028 /CLONE=RMUBU12 /FEA=EST /CNT=19 /TID=Rn.22301.1 /TIER=Stack /STK=15 /UG=Rn.22301 /UG_TITLE=ESTs AI172033 arginine-glutamic acid dipeptide (RE) repeats Rere 116665 NM_053885 0006338 // chromatin remodeling // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0000118 // histone deacetylase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371891_at BG371476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371476 /DB_XREF=gi:13268013 /DB_XREF=UI-R-CW0-bvv-f-06-0-UI.s1 /CLONE=UI-R-CW0-bvv-f-06-0-UI /FEA=EST /CNT=19 /TID=Rn.2583.1 /TIER=Stack /STK=15 /UG=Rn.2583 /UG_TITLE=ESTs BG371476 similar to 1700123O20Rik protein RGD1308430 361038 NM_001108376 1371892_at BI274263 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274263 /DB_XREF=gi:14885023 /DB_XREF=UI-R-CW0-bwg-h-04-0-UI.s1 /CLONE=UI-R-CW0-bwg-h-04-0-UI /FEA=EST /CNT=18 /TID=Rn.2167.1 /TIER=Stack /STK=15 /UG=Rn.2167 /UG_TITLE=ESTs, Weakly similar to Y116A8C.27.p (Caenorhabditis elegans) (C.elegans) BI274263 ATP synthase mitochondrial F1 complex assembly factor 2 Atpaf2 303190 NM_001107006 0043461 // proton-transporting ATP synthase complex assembly // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0016607 // nuclear speck // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371893_at BE111640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111640 /DB_XREF=gi:8503745 /DB_XREF=UI-R-BJ1-avv-b-05-0-UI.s1 /CLONE=UI-R-BJ1-avv-b-05-0-UI /FEA=EST /CNT=18 /TID=Rn.7805.1 /TIER=Stack /STK=15 /UG=Rn.7805 /UG_TITLE=ESTs BE111640 collagen, type IV, alpha 3 (Goodpasture antigen) binding protein Col4a3bp 365652 NM_001108935 0000902 // cell morphogenesis // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0006672 // ceramide metabolic process // not recorded /// 0006936 // muscle contraction // not recorded /// 0007029 // endoplasmic reticulum organization // not recorded /// 0007165 // signal transduction // not recorded /// 0008283 // cell proliferation // not recorded /// 0016310 // phosphorylation // not recorded /// 0034976 // response to endoplasmic reticulum stress // not recorded /// 0055088 // lipid homeostasis // not recorded /// 0070584 // mitochondrion morphogenesis // not recorded 0005739 // mitochondrion // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005829 // cytosol // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0016301 // kinase activity // not recorded 1371894_at AI409037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409037 /DB_XREF=gi:4252541 /DB_XREF=EST237328 /CLONE=RKIDO83 /FEA=EST /CNT=18 /TID=Rn.3038.1 /TIER=Stack /STK=15 /UG=Rn.3038 /UG_TITLE=ESTs AI409037 Glucosamine (N-acetyl)-6-sulfatase Gns 299825 NM_001011989 0008152 // metabolic process // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // inferred from electronic annotation /// 0042340 // keratan sulfate catabolic process // inferred from direct assay 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005539 // glycosaminoglycan binding // inferred from physical interaction /// 0008449 // N-acetylglucosamine-6-sulfatase activity // inferred from direct assay /// 0008449 // N-acetylglucosamine-6-sulfatase activity // inferred from electronic annotation /// 0008484 // sulfuric ester hydrolase activity // not recorded /// 0008484 // sulfuric ester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0043199 // sulfate binding // inferred from physical interaction 1371895_at BI279646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279646 /DB_XREF=gi:14927660 /DB_XREF=UI-R-DE0-caf-a-04-0-UI.s1 /CLONE=UI-R-DE0-caf-a-04-0-UI /FEA=EST /CNT=18 /TID=Rn.41153.1 /TIER=Stack /STK=15 /UG=Rn.41153 /UG_TITLE=ESTs, Weakly similar to KERATIN, TYPE I CYTOSKELETAL 21 (R.norvegicus) BI279646 keratin 14 Krt14 287701 NM_001008751 0010043 // response to zinc ion // inferred from expression pattern /// 0010212 // response to ionizing radiation // inferred from expression pattern /// 0030855 // epithelial cell differentiation // inferred from direct assay /// 0031581 // hemidesmosome assembly // not recorded /// 0045110 // intermediate filament bundle assembly // not recorded /// 0045110 // intermediate filament bundle assembly // inferred from sequence or structural similarity /// 0045110 // intermediate filament bundle assembly // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005882 // intermediate filament // inferred from electronic annotation /// 0045095 // keratin filament // inferred from direct assay /// 0045095 // keratin filament // not recorded /// 0045095 // keratin filament // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371896_at AI411436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411436 /DB_XREF=gi:4254940 /DB_XREF=EST239730 /CLONE=RKIEV68 /FEA=EST /CNT=18 /TID=Rn.3777.1 /TIER=Stack /STK=15 /UG=Rn.3777 /UG_TITLE=ESTs AI411436 growth arrest and DNA-damage-inducible, gamma interacting protein 1 Gadd45gip1 288916 NM_001100504 0007049 // cell cycle // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371897_at AI175375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175375 /DB_XREF=gi:3726013 /DB_XREF=EST218916 /CLONE=RMUCM72 /FEA=EST /CNT=17 /TID=Rn.24087.1 /TIER=Stack /STK=15 /UG=Rn.24087 /UG_TITLE=ESTs AI175375 phosphatidic acid phosphatase type 2 domain containing 3 Ppapdc3 296635 NM_001012349 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1371898_at BI287946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287946 /DB_XREF=gi:14944047 /DB_XREF=UI-R-CX0s-ccw-b-09-0-UI.s1 /CLONE=UI-R-CX0s-ccw-b-09-0-UI /FEA=EST /CNT=17 /TID=Rn.23969.1 /TIER=Stack /STK=15 /UG=Rn.23969 /UG_TITLE=ESTs BI287946 potassium channel, subfamily K, member 5 Kcnk5 364241 NM_001039516 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation 1371899_at AI102009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102009 /DB_XREF=gi:3706844 /DB_XREF=EST211298 /CLONE=RBRBX88 /FEA=EST /CNT=17 /TID=Rn.3217.1 /TIER=Stack /STK=15 /UG=Rn.3217 /UG_TITLE=ESTs, Weakly similar to TRBP MOUSE PROTAMINE-1 RNA BINDING PROTEIN (M.musculus) AI102009 protein kinase, interferon inducible double stranded RNA dependent activator Prkra 311130 NM_001024780 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0006950 // response to stress // not recorded /// 0030422 // production of siRNA involved in RNA interference // not recorded /// 0030422 // production of siRNA involved in RNA interference // inferred from sequence or structural similarity /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0042473 // outer ear morphogenesis // inferred from electronic annotation /// 0042473 // outer ear morphogenesis // not recorded /// 0042474 // middle ear morphogenesis // inferred from electronic annotation /// 0042474 // middle ear morphogenesis // not recorded /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1371900_at BF408840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408840 /DB_XREF=gi:11396815 /DB_XREF=UI-R-BS2-bet-a-08-0-UI.s1 /CLONE=UI-R-BS2-bet-a-08-0-UI /FEA=EST /CNT=17 /TID=Rn.4183.1 /TIER=Stack /STK=15 /UG=Rn.4183 /UG_TITLE=ESTs, Weakly similar to HUD RAT PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD HOMOLOG (R.norvegicus) BF408840 1371901_at AI176646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176646 /DB_XREF=gi:3727284 /DB_XREF=EST220238 /CLONE=ROVBV08 /FEA=EST /CNT=21 /TID=Rn.3633.1 /TIER=Stack /STK=15 /UG=Rn.3633 /UG_TITLE=ESTs AI176646 1371902_at AI227832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227832 /DB_XREF=gi:3811719 /DB_XREF=EST224527 /CLONE=RBRCM31 /FEA=EST /CNT=20 /TID=Rn.6337.1 /TIER=Stack /STK=15 /UG=Rn.6337 /UG_TITLE=ESTs AI227832 synaptonemal complex central element protein 1 like-like LOC100361431 100361431 XM_002728608 1371903_at BM384012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384012 /DB_XREF=gi:18184065 /DB_XREF=UI-R-DM1-ckb-e-18-0-UI.s1 /CLONE=UI-R-DM1-ckb-e-18-0-UI /FEA=EST /CNT=18 /TID=Rn.9122.1 /TIER=Stack /STK=15 /UG=Rn.9122 /UG_TITLE=ESTs BM384012 1371904_at BI294698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294698 /DB_XREF=gi:14957406 /DB_XREF=UI-R-DK0-ceb-a-07-0-UI.s1 /CLONE=UI-R-DK0-ceb-a-07-0-UI /FEA=EST /CNT=18 /TID=Rn.7052.1 /TIER=Stack /STK=15 /UG=Rn.7052 /UG_TITLE=ESTs, Weakly similar to skm-BOP2 (M.musculus) BI294698 SET and MYND domain containing 2 Smyd2 289372 NM_206851 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371905_at BM384949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384949 /DB_XREF=gi:18185002 /DB_XREF=UI-R-CN1-cjl-h-22-0-UI.s2 /CLONE=UI-R-CN1-cjl-h-22-0-UI /FEA=EST /CNT=18 /TID=Rn.19438.1 /TIER=Stack /STK=15 /UG=Rn.19438 /UG_TITLE=ESTs BM384949 similar to 0610007L01Rik protein MGC94190 288616 NM_001004204 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1371906_at BF288092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288092 /DB_XREF=gi:11219162 /DB_XREF=EST452683 /CLONE=RGIGP42 /FEA=EST /CNT=17 /TID=Rn.16881.1 /TIER=Stack /STK=15 /UG=Rn.16881 /UG_TITLE=ESTs BF288092 1371907_at BE101624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101624 /DB_XREF=gi:8493722 /DB_XREF=UI-R-BT1-aqg-b-11-0-UI.s1 /CLONE=UI-R-BT1-aqg-b-11-0-UI /FEA=EST /CNT=17 /TID=Rn.3772.1 /TIER=Stack /STK=15 /UG=Rn.3772 /UG_TITLE=ESTs, Highly similar to JC7219 nuclear protein SR-25 - mouse (M.musculus) BE101624 ADP-ribosylation-like factor 6 interacting protein 4 Arl6ip4 288656 NM_001025630 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371908_at AA891920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891920 /DB_XREF=gi:3018799 /DB_XREF=EST195723 /CLONE=RKIAI62 /FEA=EST /CNT=17 /TID=Rn.8541.1 /TIER=Stack /STK=15 /UG=Rn.8541 /UG_TITLE=ESTs, Highly similar to A Chain A, Structural Basis For The Recognition Of A Nucleoporin Fg- Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Nuclear Export Factor (H.sapiens) AA891920 NTF2-like export factor 1 Nxt1 296219 NM_001106521 0006405 // RNA export from nucleus // inferred from electronic annotation /// 0006405 // RNA export from nucleus // not recorded /// 0006611 // protein export from nucleus // inferred from electronic annotation /// 0006611 // protein export from nucleus // not recorded /// 0006810 // transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005643 // nuclear pore // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008536 // Ran GTPase binding // inferred from electronic annotation /// 0008536 // Ran GTPase binding // not recorded 1371909_at AA850406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850406 /DB_XREF=gi:2937946 /DB_XREF=EST193173 /CLONE=ROVAF28 /FEA=EST /CNT=16 /TID=Rn.6604.1 /TIER=Stack /STK=15 /UG=Rn.6604 /UG_TITLE=ESTs AA850406 mediator complex subunit 23 Med23 309565 XM_001053256 /// XM_002725463 /// XM_002728640 /// XM_220093 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // not recorded 1371910_at BF397823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397823 /DB_XREF=gi:11382807 /DB_XREF=UI-R-BS2-bec-a-10-0-UI.s1 /CLONE=UI-R-BS2-bec-a-10-0-UI /FEA=EST /CNT=16 /TID=Rn.18190.1 /TIER=Stack /STK=15 /UG=Rn.18190 /UG_TITLE=ESTs BF397823 1371911_at BM390023 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390023 /DB_XREF=gi:18190076 /DB_XREF=UI-R-CN1-cjo-o-10-0-UI.s1 /CLONE=UI-R-CN1-cjo-o-10-0-UI /FEA=EST /CNT=16 /TID=Rn.18199.1 /TIER=Stack /STK=15 /UG=Rn.18199 /UG_TITLE=ESTs, Highly similar to A41784 tumor necrosis factor-alpha-induced protein B12 (H.sapiens) BM390023 tumor necrosis factor, alpha-induced protein 1 (endothelial) Tnfaip1 287543 NM_182950 0006260 // DNA replication // inferred from direct assay /// 0006281 // DNA repair // traceable author statement /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006955 // immune response // not recorded /// 0006955 // immune response // inferred from sequence or structural similarity /// 0006955 // immune response // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0009790 // embryo development // inferred from sequence or structural similarity /// 0009790 // embryo development // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016477 // cell migration // inferred from sequence or structural similarity /// 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from sequence or structural similarity /// 0030036 // actin cytoskeleton organization // traceable author statement /// 0035024 // negative regulation of Rho protein signal transduction // not recorded /// 0035024 // negative regulation of Rho protein signal transduction // inferred from sequence or structural similarity /// 0043149 // stress fiber assembly // not recorded /// 0043149 // stress fiber assembly // inferred from sequence or structural similarity /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // traceable author statement /// 0045740 // positive regulation of DNA replication // inferred from direct assay /// 0051260 // protein homooligomerization // traceable author statement /// 0051291 // protein heterooligomerization // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from sequence or structural similarity /// 0005768 // endosome // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031463 // Cul3-RING ubiquitin ligase complex // not recorded /// 0031463 // Cul3-RING ubiquitin ligase complex // inferred from sequence or structural similarity 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017049 // GTP-Rho binding // not recorded /// 0017049 // GTP-Rho binding // inferred from sequence or structural similarity /// 0019904 // protein domain specific binding // inferred from physical interaction 1371912_at AI231358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231358 /DB_XREF=gi:3815238 /DB_XREF=EST228046 /CLONE=REMDJ10 /FEA=EST /CNT=16 /TID=Rn.2855.1 /TIER=Stack /STK=15 /UG=Rn.2855 /UG_TITLE=ESTs, Highly similar to NUKM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUNIT PRECURSOR (H.sapiens) AI231358 NADH dehydrogenase (ubiquinone) Fe-S protein 7 Ndufs7 362837 NM_001008525 0019684 // photosynthesis, light reaction // inferred from electronic annotation /// 0032981 // mitochondrial respiratory chain complex I assembly // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0005747 // mitochondrial respiratory chain complex I // not recorded 0003954 // NADH dehydrogenase activity // not recorded /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016651 // oxidoreductase activity, acting on NADH or NADPH // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048038 // quinone binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 1371913_at BG379319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379319 /DB_XREF=gi:13303791 /DB_XREF=UI-R-CS0-btu-d-06-0-UI.s1 /CLONE=UI-R-CS0-btu-d-06-0-UI /FEA=EST /CNT=16 /TID=Rn.1046.1 /TIER=Stack /STK=15 /UG=Rn.1046 /UG_TITLE=ESTs BG379319 transforming growth factor, beta induced Tgfbi 116487 NM_053802 0002062 // chondrocyte differentiation // inferred from expression pattern 0005578 // proteinaceous extracellular matrix // traceable author statement /// 0005604 // basement membrane // inferred from direct assay 1371914_at AI406553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406553 /DB_XREF=gi:4250057 /DB_XREF=EST234839 /CLONE=RKIDZ08 /FEA=EST /CNT=16 /TID=Rn.37843.1 /TIER=Stack /STK=15 /UG=Rn.37843 /UG_TITLE=ESTs, Highly similar to SWISNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1; integrase interactor 1 (Mus musculus) (M.musculus) AI406553 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 Smarcb1 361825 NM_001025728 0001824 // blastocyst development // not recorded /// 0001824 // blastocyst development // inferred from electronic annotation /// 0001835 // blastocyst hatching // inferred from electronic annotation /// 0001835 // blastocyst hatching // not recorded /// 0006338 // chromatin remodeling // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0045090 // retroviral genome replication // not recorded /// 0051091 // positive regulation of transcription factor activity // not recorded 0000228 // nuclear chromosome // inferred from electronic annotation /// 0001741 // XY body // inferred from electronic annotation /// 0001741 // XY body // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0016514 // SWI/SNF complex // not recorded /// 0071564 // npBAF complex // inferred from electronic annotation /// 0071564 // npBAF complex // not recorded /// 0071565 // nBAF complex // inferred from electronic annotation /// 0071565 // nBAF complex // not recorded 0002039 // p53 binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1371915_at AW523679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523679 /DB_XREF=gi:7166064 /DB_XREF=UI-R-BO0-aic-h-09-0-UI.s1 /CLONE=UI-R-BO0-aic-h-09-0-UI /FEA=EST /CNT=16 /TID=Rn.2683.1 /TIER=Stack /STK=15 /UG=Rn.2683 /UG_TITLE=ESTs AW523679 poly(rC) binding protein 4 Pcbp4 363133 NM_001191883 /// XM_001071111 /// XM_343468 0003723 // RNA binding // inferred from electronic annotation 1371916_at AI409380 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409380 /DB_XREF=gi:4252884 /DB_XREF=EST237672 /CLONE=RKIDX63 /FEA=EST /CNT=16 /TID=Rn.11960.1 /TIER=Stack /STK=15 /UG=Rn.11960 /UG_TITLE=ESTs AI409380 selenoprotein X, 1 Sepx1 685059 NM_001044285 0030091 // protein repair // inferred from electronic annotation /// 0030091 // protein repair // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000318 // protein-methionine-R-oxide reductase activity // inferred from electronic annotation /// 0000318 // protein-methionine-R-oxide reductase activity // not recorded /// 0008113 // peptide-methionine-(S)-S-oxide reductase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371917_at AI411119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411119 /DB_XREF=gi:4254623 /DB_XREF=EST239413 /CLONE=RKIET57 /FEA=EST /CNT=16 /TID=Rn.40588.1 /TIER=Stack /STK=15 /UG=Rn.40588 /UG_TITLE=ESTs, Moderately similar to TRMU_HUMAN PROBABLE TRNA (H.sapiens) AI411119 tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase Trmu 362976 NM_001135876 0006400 // tRNA modification // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000049 // tRNA binding // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1371918_at AI235284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235284 /DB_XREF=gi:4136070 /DB_XREF=EST231846 /CLONE=ROVCP80 /FEA=EST /CNT=16 /TID=Rn.25312.1 /TIER=Stack /STK=15 /UG=Rn.25312 /UG_TITLE=ESTs, Weakly similar to MIC2_HUMAN T-CELL SURFACE GLYCOPROTEIN E2 PRECURSOR (H.sapiens) AI235284 CD99 antigen Cd99 652929 NM_001100804 1371919_at BF414021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414021 /DB_XREF=gi:11402010 /DB_XREF=UI-R-BJ2-bol-e-03-0-UI.s1 /CLONE=UI-R-BJ2-bol-e-03-0-UI /FEA=EST /CNT=16 /TID=Rn.2820.1 /TIER=Stack /STK=15 /UG=Rn.2820 /UG_TITLE=ESTs, Moderately similar to RP2 MOUSE TESTOSTERONE-REGULATED RP2 PROTEIN (M.musculus) BF414021 nudix (nucleoside diphosphate linked moiety X)-type motif 19 Nudt19 308518 NM_001004258 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371920_at AA851255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851255 /DB_XREF=gi:2938795 /DB_XREF=EST194023 /CLONE=RPLAE45 /FEA=EST /CNT=21 /TID=Rn.1344.1 /TIER=Stack /STK=15 /UG=Rn.1344 /UG_TITLE=ESTs, Highly similar to T14743 hypothetical protein DKFZp586F1524.1 (H.sapiens) AA851255 polymerase (DNA-directed), delta interacting protein 2 Poldip2 287544 NM_001105816 0070584 // mitochondrion morphogenesis // inferred from electronic annotation /// 0070584 // mitochondrion morphogenesis // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0042645 // mitochondrial nucleoid // not recorded 1371921_at BM986272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM986272 /DB_XREF=gi:19705661 /DB_XREF=EST531726 /CLONE=RGIAD74 /FEA=EST /CNT=18 /TID=Rn.11862.1 /TIER=Stack /STK=15 /UG=Rn.11862 /UG_TITLE=ESTs, Highly similar to CTN1 MOUSE ALPHA-1 CATENIN (M.musculus) BM986272 catenin (cadherin associated protein), alpha 1 Ctnna1 307505 NM_001007145 0001541 // ovarian follicle development // inferred from expression pattern /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007163 // establishment or maintenance of cell polarity // inferred from electronic annotation /// 0007163 // establishment or maintenance of cell polarity // not recorded /// 0007406 // negative regulation of neuroblast proliferation // inferred from electronic annotation /// 0007406 // negative regulation of neuroblast proliferation // not recorded /// 0007568 // aging // inferred from expression pattern /// 0008584 // male gonad development // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016264 // gap junction assembly // inferred from mutant phenotype /// 0031103 // axon regeneration // inferred from expression pattern /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043297 // apical junction assembly // inferred from electronic annotation /// 0043297 // apical junction assembly // not recorded /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045880 // positive regulation of smoothened signaling pathway // inferred from electronic annotation /// 0045880 // positive regulation of smoothened signaling pathway // not recorded /// 0051291 // protein heterooligomerization // inferred from physical interaction /// 0071681 // cellular response to indole-3-methanol // not recorded 0001669 // acrosomal vesicle // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // inferred from direct assay /// 0005911 // cell-cell junction // not recorded /// 0005912 // adherens junction // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0005913 // cell-cell adherens junction // not recorded /// 0005915 // zonula adherens // inferred from electronic annotation /// 0005915 // zonula adherens // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016342 // catenin complex // not recorded /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0017166 // vinculin binding // not recorded /// 0045295 // gamma-catenin binding // not recorded /// 0045296 // cadherin binding // inferred from electronic annotation /// 0045296 // cadherin binding // not recorded /// 0051015 // actin filament binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1371922_at AI169140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169140 /DB_XREF=gi:4134369 /DB_XREF=EST214974 /CLONE=RKIBO03 /FEA=EST /CNT=17 /TID=Rn.18638.1 /TIER=Stack /STK=15 /UG=Rn.18638 /UG_TITLE=ESTs AI169140 Carbonic anyhydrase 12 Car12 363085 NM_001080756 0006730 // one-carbon metabolic process // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0004089 // carbonate dehydratase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371923_at BG380281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380281 /DB_XREF=gi:13304753 /DB_XREF=UI-R-CS0-btv-c-03-0-UI.s1 /CLONE=UI-R-CS0-btv-c-03-0-UI /FEA=EST /CNT=16 /TID=Rn.16547.1 /TIER=Stack /STK=15 /UG=Rn.16547 /UG_TITLE=ESTs BG380281 lysophosphatidylcholine acyltransferase 1 Lpcat1 361467 NM_001100735 0008152 // metabolic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // not recorded /// 0008654 // phospholipid biosynthetic process // inferred from sequence or structural similarity /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0047184 // 1-acylglycerophosphocholine O-acyltransferase activity // not recorded /// 0047184 // 1-acylglycerophosphocholine O-acyltransferase activity // inferred from sequence or structural similarity /// 0047184 // 1-acylglycerophosphocholine O-acyltransferase activity // inferred from electronic annotation /// 0047192 // 1-alkylglycerophosphocholine O-acetyltransferase activity // inferred from electronic annotation 1371924_at BI274355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274355 /DB_XREF=gi:14885208 /DB_XREF=UI-R-CW0-bwh-h-10-0-UI.s1 /CLONE=UI-R-CW0-bwh-h-10-0-UI /FEA=EST /CNT=16 /TID=Rn.37141.1 /TIER=Stack /STK=15 /UG=Rn.37141 /UG_TITLE=ESTs, Weakly similar to NOMR RAT NEURONAL OLFACTOMEDIN-RELATED ER LOCALIZED PROTEIN PRECURSOR (R.norvegicus) BI274355 olfactomedin-like 3 Olfml3 310743 NM_001107708 0007275 // multicellular organismal development // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 1371925_at AA893621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893621 /DB_XREF=gi:3020500 /DB_XREF=EST197424 /CLONE=RPLAC68 /FEA=EST /CNT=16 /TID=Rn.3697.1 /TIER=Stack /STK=15 /UG=Rn.3697 /UG_TITLE=ESTs, Weakly similar to E1-E2 ATPase (Caenorhabditis elegans) (C.elegans) AA893621 ATPase type 13A1 Atp13a1 290673 NM_001106079 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation 1371926_at AI171807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171807 /DB_XREF=gi:3711847 /DB_XREF=EST217789 /CLONE=RMUBQ94 /FEA=EST /CNT=16 /TID=Rn.22485.1 /TIER=Stack /STK=15 /UG=Rn.22485 /UG_TITLE=ESTs AI171807 interleukin 6 signal transducer Il6st 25205 NM_001008725 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // not recorded /// 0006642 // triglyceride mobilization // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007259 // JAK-STAT cascade // inferred from mutant phenotype /// 0007584 // response to nutrient // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008593 // regulation of Notch signaling pathway // inferred from electronic annotation /// 0008593 // regulation of Notch signaling pathway // not recorded /// 0014911 // positive regulation of smooth muscle cell migration // inferred from mutant phenotype /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // traceable author statement /// 0034097 // response to cytokine stimulus // inferred from electronic annotation /// 0034097 // response to cytokine stimulus // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0042511 // positive regulation of tyrosine phosphorylation of Stat1 protein // inferred from electronic annotation /// 0042511 // positive regulation of tyrosine phosphorylation of Stat1 protein // not recorded /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // inferred from electronic annotation /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0046883 // regulation of hormone secretion // traceable author statement /// 0048711 // positive regulation of astrocyte differentiation // inferred from electronic annotation /// 0048711 // positive regulation of astrocyte differentiation // not recorded /// 0048861 // leukemia inhibitory factor signaling pathway // inferred from electronic annotation /// 0048861 // leukemia inhibitory factor signaling pathway // not recorded /// 0051481 // reduction of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0070104 // negative regulation of interleukin-6-mediated signaling pathway // inferred from electronic annotation /// 0070104 // negative regulation of interleukin-6-mediated signaling pathway // not recorded /// 0070106 // interleukin-27-mediated signaling pathway // inferred from electronic annotation /// 0070106 // interleukin-27-mediated signaling pathway // not recorded /// 0070120 // ciliary neurotrophic factor-mediated signaling pathway // inferred from electronic annotation /// 0070120 // ciliary neurotrophic factor-mediated signaling pathway // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005896 // interleukin-6 receptor complex // inferred from electronic annotation /// 0005896 // interleukin-6 receptor complex // not recorded /// 0005900 // oncostatin-M receptor complex // inferred from electronic annotation /// 0005900 // oncostatin-M receptor complex // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0070110 // ciliary neurotrophic factor receptor complex // inferred from electronic annotation /// 0070110 // ciliary neurotrophic factor receptor complex // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004897 // ciliary neurotrophic factor receptor activity // not recorded /// 0004897 // ciliary neurotrophic factor receptor activity // inferred from electronic annotation /// 0004915 // interleukin-6 receptor activity // inferred from electronic annotation /// 0004915 // interleukin-6 receptor activity // not recorded /// 0004921 // interleukin-11 receptor activity // inferred from electronic annotation /// 0004921 // interleukin-11 receptor activity // not recorded /// 0004923 // leukemia inhibitory factor receptor activity // inferred from electronic annotation /// 0004923 // leukemia inhibitory factor receptor activity // not recorded /// 0004924 // oncostatin-M receptor activity // inferred from electronic annotation /// 0004924 // oncostatin-M receptor activity // not recorded /// 0005125 // cytokine activity // traceable author statement /// 0005127 // ciliary neurotrophic factor receptor binding // inferred from electronic annotation /// 0005127 // ciliary neurotrophic factor receptor binding // not recorded /// 0005138 // interleukin-6 receptor binding // inferred from electronic annotation /// 0005138 // interleukin-6 receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded /// 0019838 // growth factor binding // inferred from electronic annotation /// 0019970 // interleukin-11 binding // not recorded /// 0019970 // interleukin-11 binding // inferred from electronic annotation /// 0019981 // interleukin-6 binding // not recorded /// 0019981 // interleukin-6 binding // inferred from electronic annotation 1371927_at BM386334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386334 /DB_XREF=gi:18186387 /DB_XREF=UI-R-CN1-cjf-l-21-0-UI.s1 /CLONE=UI-R-CN1-cjf-l-21-0-UI /FEA=EST /CNT=15 /TID=Rn.19689.1 /TIER=Stack /STK=15 /UG=Rn.19689 /UG_TITLE=ESTs BM386334 ankyrin repeat domain 23 Ankrd23 316330 NM_001108211 0006631 // fatty acid metabolic process // not recorded /// 0009612 // response to mechanical stimulus // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0014704 // intercalated disc // inferred from direct assay /// 0030016 // myofibril // inferred from direct assay /// 0031674 // I band // not recorded 1371928_at BG380355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380355 /DB_XREF=gi:13304827 /DB_XREF=UI-R-CT0-btw-b-09-0-UI.s1 /CLONE=UI-R-CT0-btw-b-09-0-UI /FEA=EST /CNT=15 /TID=Rn.14970.1 /TIER=Stack /STK=15 /UG=Rn.14970 /UG_TITLE=ESTs BG380355 cell division cycle associated 8 Cdca8 500545 NM_001025050 0000089 // mitotic metaphase // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0051276 // chromosome organization // not recorded /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000775 // chromosome, centromeric region // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0032133 // chromosome passenger complex // not recorded /// 0032133 // chromosome passenger complex // inferred from sequence or structural similarity /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from sequence or structural similarity 0005515 // protein binding // not recorded 1371929_at BI278563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278563 /DB_XREF=gi:14925532 /DB_XREF=UI-R-CW0-bxn-c-02-0-UI.s1 /CLONE=UI-R-CW0-bxn-c-02-0-UI /FEA=EST /CNT=15 /TID=Rn.16914.2 /TIER=Stack /STK=15 /UG=Rn.16914 /UG_TITLE=Rattus norvegicus nuclear receptor coactivator GT198 mRNA, complete cds BI278563 MAX-like protein X Mlx 360631 NM_001034112 0006913 // nucleocytoplasmic transport // not recorded /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 1371930_at BG380882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380882 /DB_XREF=gi:13305354 /DB_XREF=UI-R-CT0-buc-e-04-0-UI.s1 /CLONE=UI-R-CT0-buc-e-04-0-UI /FEA=EST /CNT=15 /TID=Rn.1575.1 /TIER=Stack /STK=15 /UG=Rn.1575 /UG_TITLE=ESTs, Moderately similar to SYQ_HUMAN GLUTAMINYL-TRNA SYNTHETASE (H.sapiens) BG380882 glutaminyl-tRNA synthetase /// similar to glutaminyl-tRNA synthetase Qars /// RGD1562301 290868 /// 501055 NM_001007624 /// XM_576470 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006425 // glutaminyl-tRNA aminoacylation // inferred from electronic annotation /// 0043039 // tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004819 // glutamine-tRNA ligase activity // inferred from electronic annotation /// 0004819 // glutamine-tRNA ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016876 // ligase activity, forming aminoacyl-tRNA and related compounds // inferred from electronic annotation 1371931_at BI274753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274753 /DB_XREF=gi:14885975 /DB_XREF=UI-R-CX0-bxd-f-05-0-UI.s1 /CLONE=UI-R-CX0-bxd-f-05-0-UI /FEA=EST /CNT=15 /TID=Rn.19685.1 /TIER=Stack /STK=15 /UG=Rn.19685 /UG_TITLE=ESTs BI274753 general transcription factor II I Gtf2i 353256 NM_001001512 0006350 // transcription // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051481 // reduction of cytosolic calcium ion concentration // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0042995 // cell projection // not recorded /// 0043025 // neuronal cell body // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051019 // mitogen-activated protein kinase binding // not recorded 1371932_at AI232287 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232287 /DB_XREF=gi:3816167 /DB_XREF=EST228975 /CLONE=RKIBZ77 /FEA=EST /CNT=15 /TID=Rn.5808.1 /TIER=Stack /STK=15 /UG=Rn.5808 /UG_TITLE=ESTs AI232287 transmembrane protein 192 Tmem192 361137 NM_001014141 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1371933_at AI228039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228039 /DB_XREF=gi:3811926 /DB_XREF=EST224734 /CLONE=RBRCP27 /FEA=EST /CNT=15 /TID=Rn.16575.1 /TIER=Stack /STK=15 /UG=Rn.16575 /UG_TITLE=ESTs, Moderately similar to T00069 hypothetical protein KIAA0454 (H.sapiens) AI228039 1371934_at AI406487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406487 /DB_XREF=gi:4249991 /DB_XREF=EST234773 /CLONE=RBRDL59 /FEA=EST /CNT=15 /TID=Rn.8050.1 /TIER=Stack /STK=15 /UG=Rn.8050 /UG_TITLE=ESTs, Highly similar to UBPN_MOUSE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 23 (UBIQUITIN THIOLESTERASE 23) (UBIQUITIN-SPECIFIC PROCESSING PROTEASE 23) (DEUBIQUITINATING ENZYME 23) (M.musculus) AI406487 ubiquitin specific peptidase 21 Usp21 688466 NM_001127638 0006350 // transcription // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016578 // histone deubiquitination // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation 0003713 // transcription coactivator activity // inferred from sequence or structural similarity /// 0004221 // ubiquitin thiolesterase activity // inferred from sequence or structural similarity /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific protease activity // inferred from sequence or structural similarity /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from sequence or structural similarity /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019784 // NEDD8-specific protease activity // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1371935_at AA943122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943122 /DB_XREF=gi:3103038 /DB_XREF=EST198621 /CLONE=RBRAF33 /FEA=EST /CNT=15 /TID=Rn.2747.1 /TIER=Stack /STK=15 /UG=Rn.2747 /UG_TITLE=ESTs AA943122 transmembrane protein 9 Tmem9 289046 NM_001105953 0005764 // lysosome // not recorded /// 0005770 // late endosome // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 1371936_at BI284436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284436 /DB_XREF=gi:14937114 /DB_XREF=UI-R-CX0s-ccr-a-12-0-UI.s1 /CLONE=UI-R-CX0s-ccr-a-12-0-UI /FEA=EST /CNT=51 /TID=Rn.1342.1 /TIER=Stack /STK=14 /UG=Rn.1342 /UG_TITLE=ESTs, Weakly similar to HE47 RAT PROBABLE ATP-DEPENDENT RNA HELICASE P47 (R.norvegicus) BI284436 eukaryotic translation initiation factor 4A1 Eif4a1 287436 NM_199372 0031100 // organ regeneration // inferred from expression pattern 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1371937_at BG381652 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381652 /DB_XREF=gi:13306124 /DB_XREF=UI-R-CT0-bud-g-11-0-UI.s1 /CLONE=UI-R-CT0-bud-g-11-0-UI /FEA=EST /CNT=38 /TID=Rn.231.1 /TIER=Stack /STK=14 /UG=Rn.231 /UG_TITLE=ESTs BG381652 similar to RIKEN cDNA 6030419C18 gene RGD1562618 501007 NM_001113791 1371938_at BM390336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390336 /DB_XREF=gi:18190389 /DB_XREF=UI-R-CN1-cjq-m-06-0-UI.s1 /CLONE=UI-R-CN1-cjq-m-06-0-UI /FEA=EST /CNT=48 /TID=Rn.3758.1 /TIER=Stack /STK=14 /UG=Rn.3758 /UG_TITLE=ESTs, Highly similar to S16788 probable reverse transcriptase - rat (R.norvegicus) BM390336 Cell cycle associated protein 1 Caprin1 362173 NM_001012185 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // not recorded 1371939_at AI171369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171369 /DB_XREF=gi:3711409 /DB_XREF=EST217325 /CLONE=RMUBJ81 /FEA=EST /CNT=48 /TID=Rn.3758.1 /TIER=Stack /STK=8 /UG=Rn.3758 /UG_TITLE=ESTs, Highly similar to S16788 probable reverse transcriptase - rat (R.norvegicus) AI171369 cell cycle associated protein 1 Caprin1 362173 NM_001012185 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // not recorded 1371940_at AW920000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920000 /DB_XREF=gi:8085806 /DB_XREF=EST351304 /CLONE=RGIGP51 /FEA=EST /CNT=41 /TID=Rn.4320.1 /TIER=Stack /STK=14 /UG=Rn.4320 /UG_TITLE=ESTs, Highly similar to ACF7_MOUSE ACTIN CROSS-LINKING FAMILY PROTEIN 7 (MICROTUBULE ACTIN CROSSLINKING FACTOR) (MACF) (M.musculus) AW920000 microtubule-actin crosslinking factor 1 Macf1 362587 NM_001135758 0007050 // cell cycle arrest // inferred from electronic annotation 0005856 // cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1371941_at AI411390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411390 /DB_XREF=gi:4254894 /DB_XREF=EST239684 /CLONE=RKIES74 /FEA=EST /CNT=43 /TID=Rn.3294.1 /TIER=Stack /STK=14 /UG=Rn.3294 /UG_TITLE=ESTs AI411390 similar to RIKEN cDNA 5230400G24 RGD1310230 301563 NM_001039015 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1371942_at BM390378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390378 /DB_XREF=gi:18190431 /DB_XREF=UI-R-CN1-cjq-f-21-0-UI.s1 /CLONE=UI-R-CN1-cjq-f-21-0-UI /FEA=EST /CNT=28 /TID=Rn.903.1 /TIER=Stack /STK=14 /UG=Rn.903 /UG_TITLE=ESTs, Moderately similar to GLUTATHIONE S-TRANSFERASE 5 (R.norvegicus) BM390378 glutathione S-transferase, theta 3 Gstt3 499422 NM_001137643 0006749 // glutathione metabolic process // not recorded 0004364 // glutathione transferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation 1371943_at BF420075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420075 /DB_XREF=gi:11408064 /DB_XREF=UI-R-BJ2-bpm-f-06-0-UI.s1 /CLONE=UI-R-BJ2-bpm-f-06-0-UI /FEA=EST /CNT=25 /TID=Rn.4052.1 /TIER=Stack /STK=14 /UG=Rn.4052 /UG_TITLE=ESTs BF420075 serine/threonine kinase 40 Stk40 360230 NM_183056 0006468 // protein phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1371944_at BF282658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282658 /DB_XREF=gi:11213728 /DB_XREF=EST447249 /CLONE=RGIDR35 /FEA=EST /CNT=60 /TID=Rn.54778.1 /TIER=Stack /STK=14 /UG=Rn.54778 /UG_TITLE=ESTs, Weakly similar to ubiquitin-conjugating enzyme E2D 2 (Rattus norvegicus) (R.norvegicus) BF282658 ubiquitin-conjugating enzyme E2L 3 Ube2l3 363836 NM_001108847 0000209 // protein polyubiquitination // not recorded /// 0007090 // regulation of S phase of mitotic cell cycle // not recorded /// 0008283 // cell proliferation // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0032583 // regulation of gene-specific transcription // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070979 // protein K11-linked ubiquitination // not recorded /// 0071383 // cellular response to steroid hormone stimulus // not recorded /// 0071385 // cellular response to glucocorticoid stimulus // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003713 // transcription coactivator activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1371945_at AI407788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407788 /DB_XREF=gi:4251292 /DB_XREF=EST236078 /CLONE=ROVEC43 /FEA=EST /CNT=60 /TID=Rn.54778.1 /TIER=Stack /STK=9 /UG=Rn.54778 /UG_TITLE=ESTs, Weakly similar to ubiquitin-conjugating enzyme E2D 2 (Rattus norvegicus) (R.norvegicus) AI407788 ubiquitin-conjugating enzyme E2L 3 Ube2l3 363836 NM_001108847 0000209 // protein polyubiquitination // not recorded /// 0007090 // regulation of S phase of mitotic cell cycle // not recorded /// 0008283 // cell proliferation // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0032583 // regulation of gene-specific transcription // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070979 // protein K11-linked ubiquitination // not recorded /// 0071383 // cellular response to steroid hormone stimulus // not recorded /// 0071385 // cellular response to glucocorticoid stimulus // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003713 // transcription coactivator activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1371946_at BG373288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373288 /DB_XREF=gi:13269825 /DB_XREF=UI-R-CV1-brx-a-04-0-UI.s1 /CLONE=UI-R-CV1-brx-a-04-0-UI /FEA=EST /CNT=23 /TID=Rn.3466.1 /TIER=Stack /STK=14 /UG=Rn.3466 /UG_TITLE=ESTs BG373288 kidney predominant protein NCU-G1 RGD1303130 295231 NM_001004226 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from sequence or structural similarity /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from electronic annotation 1371947_at BG671865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671865 /DB_XREF=gi:13893964 /DB_XREF=DRNBYH11 /CLONE=DRNBYH11 /FEA=EST /CNT=22 /TID=Rn.3096.1 /TIER=Stack /STK=14 /UG=Rn.3096 /UG_TITLE=ESTs, Highly similar to NECDIN (M.musculus) BG671865 necdin homolog (mouse) Ndn 308690 NM_001008558 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007413 // axonal fasciculation // inferred from electronic annotation /// 0007413 // axonal fasciculation // not recorded /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // not recorded /// 0008347 // glial cell migration // inferred from electronic annotation /// 0008347 // glial cell migration // not recorded /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0019233 // sensory perception of pain // not recorded /// 0048011 // nerve growth factor receptor signaling pathway // not recorded /// 0048011 // nerve growth factor receptor signaling pathway // non-traceable author statement /// 0048011 // nerve growth factor receptor signaling pathway // inferred from electronic annotation /// 0048666 // neuron development // inferred from electronic annotation /// 0048666 // neuron development // not recorded /// 0048676 // axon extension involved in development // inferred from electronic annotation /// 0048676 // axon extension involved in development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0043015 // gamma-tubulin binding // inferred from electronic annotation /// 0043015 // gamma-tubulin binding // not recorded 1371948_at BF415030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415030 /DB_XREF=gi:11403019 /DB_XREF=UI-R-BJ2-boy-h-02-0-UI.s1 /CLONE=UI-R-BJ2-boy-h-02-0-UI /FEA=EST /CNT=22 /TID=Rn.8122.1 /TIER=Stack /STK=14 /UG=Rn.8122 /UG_TITLE=ESTs, Highly similar to JC7301 Down syndrome critical region protein 5 alpha (H.sapiens) BF415030 phosphatidylinositol glycan anchor biosynthesis, class P Pigp 288238 NM_001099758 0016254 // preassembly of GPI anchor in ER membrane // not recorded 1371949_at BM390332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390332 /DB_XREF=gi:18190385 /DB_XREF=UI-R-CN1-cjq-k-20-0-UI.s1 /CLONE=UI-R-CN1-cjq-k-20-0-UI /FEA=EST /CNT=47 /TID=Rn.17784.1 /TIER=Stack /STK=14 /UG=Rn.17784 /UG_TITLE=ESTs BM390332 basic leucine zipper and W2 domains 1 Bzw1 363232 NM_198789 0006350 // transcription // inferred from electronic annotation /// 0016070 // RNA metabolic process // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005737 // cytoplasm // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371950_at AI008961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008961 /DB_XREF=gi:3222793 /DB_XREF=EST203412 /CLONE=REMBG18 /FEA=EST /CNT=25 /TID=Rn.3541.1 /TIER=Stack /STK=14 /UG=Rn.3541 /UG_TITLE=ESTs, Weakly similar to SP93 RAT CHANNEL ASSOCIATED PROTEIN OF SYNAPSE-110 (R.norvegicus) AI008961 PDZ domain containing 11 Pdzd11 302422 NM_001106945 0005829 // cytosol // not recorded /// 0016323 // basolateral plasma membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded 1371951_at AA800031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800031 /DB_XREF=gi:2862986 /DB_XREF=EST189528 /CLONE=RHEAI59 /FEA=EST /CNT=22 /TID=Rn.3849.2 /TIER=Stack /STK=14 /UG=Rn.3849 /LL=63839 /UG_GENE=Fhl2 /UG_TITLE=four and a half LIM domains 2 AA800031 four and a half LIM domains 2 Fhl2 63839 NM_031677 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0009725 // response to hormone stimulus // inferred from electronic annotation /// 0009725 // response to hormone stimulus // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0055014 // atrial cardiac muscle cell development // inferred from electronic annotation /// 0055014 // atrial cardiac muscle cell development // not recorded /// 0055015 // ventricular cardiac muscle cell development // inferred from electronic annotation /// 0055015 // ventricular cardiac muscle cell development // not recorded /// 0060347 // heart trabecula formation // inferred from electronic annotation /// 0060347 // heart trabecula formation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0030018 // Z disc // inferred from direct assay /// 0031430 // M band // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1371952_at AI010954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010954 /DB_XREF=gi:4133339 /DB_XREF=EST205405 /CLONE=RMUAU71 /FEA=EST /CNT=21 /TID=Rn.2745.1 /TIER=Stack /STK=14 /UG=Rn.2745 /UG_TITLE=ESTs AI010954 RNA binding motif protein 18 Rbm18 311902 NM_001107838 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1371953_at AI408309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408309 /DB_XREF=gi:4251813 /DB_XREF=EST236599 /CLONE=ROVEN16 /FEA=EST /CNT=20 /TID=Rn.3989.1 /TIER=Stack /STK=14 /UG=Rn.3989 /UG_TITLE=ESTs AI408309 cyclin G2 Ccng2 29157 NM_001105725 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded 1371954_at BF290193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290193 /DB_XREF=gi:11221263 /DB_XREF=EST454784 /CLONE=RGIHT58 /FEA=EST /CNT=20 /TID=Rn.3793.1 /TIER=Stack /STK=14 /UG=Rn.3793 /UG_TITLE=ESTs BF290193 Tensin 1 Tns1 301509 NM_001191810 /// XM_002727232 /// XM_237286 0005515 // protein binding // inferred from electronic annotation 1371955_at BF408394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408394 /DB_XREF=gi:11396369 /DB_XREF=UI-R-BJ2-brc-c-05-0-UI.s1 /CLONE=UI-R-BJ2-brc-c-05-0-UI /FEA=EST /CNT=28 /TID=Rn.7108.1 /TIER=Stack /STK=14 /UG=Rn.7108 /UG_TITLE=ESTs, Highly similar to T46390 hypothetical protein DKFZp434C1920.1 (H.sapiens) BF408394 mitochondrial ribosomal protein L35 Mrpl35 297334 NM_001106596 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1371956_at BG372686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372686 /DB_XREF=gi:13269223 /DB_XREF=UI-R-CV1-brz-d-03-0-UI.s1 /CLONE=UI-R-CV1-brz-d-03-0-UI /FEA=EST /CNT=26 /TID=Rn.3523.1 /TIER=Stack /STK=14 /UG=Rn.3523 /UG_TITLE=ESTs, Moderately similar to neurodegeneration-associated protein 1 (R.norvegicus) BG372686 similar to praja1, RING-H2 motif containing LOC683077 683077 NM_001101006 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371957_at BM388851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388851 /DB_XREF=gi:18188904 /DB_XREF=UI-R-DZ0-ckn-g-20-0-UI.s1 /CLONE=UI-R-DZ0-ckn-g-20-0-UI /FEA=EST /CNT=21 /TID=Rn.6698.1 /TIER=Stack /STK=14 /UG=Rn.6698 /UG_TITLE=ESTs, Weakly similar to T50616 hypothetical protein DKFZp761G0415.1 (H.sapiens) BM388851 IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) Imp4 316317 NM_001009700 0006364 // rRNA processing // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1371958_at BM392148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392148 /DB_XREF=gi:18192201 /DB_XREF=UI-R-DO1-ckp-e-04-0-UI.s1 /CLONE=UI-R-DO1-ckp-e-04-0-UI /FEA=EST /CNT=21 /TID=Rn.39199.1 /TIER=Stack /STK=14 /UG=Rn.39199 /UG_TITLE=ESTs BM392148 poly(A) binding protein, nuclear 1 Pabpn1 116697 NM_001135008 0008380 // RNA splicing // not recorded /// 0016973 // poly(A)+ mRNA export from nucleus // inferred from electronic annotation /// 0016973 // poly(A)+ mRNA export from nucleus // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371959_at AI235236 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235236 /DB_XREF=gi:3828742 /DB_XREF=EST231798 /CLONE=ROVCP24 /FEA=EST /CNT=21 /TID=Rn.8353.2 /TIER=Stack /STK=14 /UG=Rn.8353 /LL=24828 /UG_GENE=Th2a /UG_TITLE=Testis-specific histone 2a AI235236 histone cluster 2, H2aa3 Hist2h2aa3 365877 XM_001062079 /// XM_345255 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1371960_at AI230548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230548 /DB_XREF=gi:3814450 /DB_XREF=EST227258 /CLONE=REMCY16 /FEA=EST /CNT=21 /TID=Rn.6931.1 /TIER=Stack /STK=14 /UG=Rn.6931 /UG_TITLE=ESTs AI230548 1371961_at BF287282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287282 /DB_XREF=gi:11218338 /DB_XREF=EST451859 /CLONE=RGIGD82 /FEA=EST /CNT=20 /TID=Rn.25142.1 /TIER=Stack /STK=14 /UG=Rn.25142 /UG_TITLE=ESTs, Weakly similar to F09G2.8.p (Caenorhabditis elegans) (C.elegans) BF287282 phospholipase D family, member 3 Pld3 361527 NM_001012167 0008152 // metabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004630 // phospholipase D activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0070290 // NAPE-specific phospholipase D activity // inferred from electronic annotation 1371962_at AI412102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412102 /DB_XREF=gi:4255606 /DB_XREF=EST240396 /CLONE=RKIEJ74 /FEA=EST /CNT=20 /TID=Rn.1660.1 /TIER=Stack /STK=14 /UG=Rn.1660 /UG_TITLE=ESTs, Highly similar to EFTU_HUMAN ELONGATION FACTOR TU, MITOCHONDRIAL PRECURSOR (H.sapiens) AI412102 Tu translation elongation factor, mitochondrial Tufm 293481 NM_001106295 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0006414 // translational elongation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0042645 // mitochondrial nucleoid // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0003746 // translation elongation factor activity // not recorded /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1371963_at BF395042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395042 /DB_XREF=gi:11380003 /DB_XREF=UI-R-CM0-bji-a-05-0-UI.s1 /CLONE=UI-R-CM0-bji-a-05-0-UI /FEA=EST /CNT=19 /TID=Rn.6033.1 /TIER=Stack /STK=14 /UG=Rn.6033 /UG_TITLE=ESTs, Moderately similar to alpha-propionyl-CoA carboxylase (R.norvegicus) BF395042 propionyl-coenzyme A carboxylase, alpha polypeptide Pcca 687008 NM_019330 0008152 // metabolic process // inferred from electronic annotation /// 0009062 // fatty acid catabolic process // traceable author statement /// 0009063 // cellular amino acid catabolic process // traceable author statement 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004658 // propionyl-CoA carboxylase activity // traceable author statement /// 0004658 // propionyl-CoA carboxylase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0009374 // biotin binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1371964_at BM385050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385050 /DB_XREF=gi:18185103 /DB_XREF=UI-R-CN1-cjm-d-15-0-UI.s9 /CLONE=UI-R-CN1-cjm-d-15-0-UI /FEA=EST /CNT=19 /TID=Rn.7328.1 /TIER=Stack /STK=14 /UG=Rn.7328 /UG_TITLE=ESTs BM385050 G-rich RNA sequence binding factor 1 Grsf1 305256 NM_001100890 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0016331 // morphogenesis of embryonic epithelium // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1371965_at BF283269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283269 /DB_XREF=gi:11214339 /DB_XREF=EST447860 /CLONE=RGIDZ58 /FEA=EST /CNT=19 /TID=Rn.3269.1 /TIER=Stack /STK=14 /UG=Rn.3269 /UG_TITLE=ESTs, Highly similar to Unknown (H.sapiens) BF283269 methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria Mmadhc 362134 NM_001004280 0005739 // mitochondrion // inferred from electronic annotation 1371966_at BM392375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392375 /DB_XREF=gi:18192428 /DB_XREF=UI-R-EB1-clf-a-04-0-UI.s1 /CLONE=UI-R-EB1-clf-a-04-0-UI /FEA=EST /CNT=36 /TID=Rn.76652.2 /TIER=Stack /STK=14 /UG=Rn.76652 /LL=25604 /UG_GENE=Pcmt1 /UG_TITLE=Protein-L-isoaspartate (D-aspartate) O-methyltransferase BM392375 protein-L-isoaspartate (D-aspartate) O-methyltransferase 1 Pcmt1 25604 NM_013073 0006464 // protein modification process // inferred from electronic annotation /// 0006479 // protein methylation // not recorded /// 0046498 // S-adenosylhomocysteine metabolic process // inferred from direct assay /// 0046500 // S-adenosylmethionine metabolic process // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004719 // protein-L-isoaspartate (D-aspartate) O-methyltransferase activity // inferred from direct assay /// 0004719 // protein-L-isoaspartate (D-aspartate) O-methyltransferase activity // not recorded /// 0004719 // protein-L-isoaspartate (D-aspartate) O-methyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1371967_at AI410349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410349 /DB_XREF=gi:4253853 /DB_XREF=EST238642 /CLONE=RKIDN41 /FEA=EST /CNT=24 /TID=Rn.7460.1 /TIER=Stack /STK=14 /UG=Rn.7460 /UG_TITLE=ESTs, Weakly similar to T12688 hypothetical protein 63B12.2 - fruit fly (D.melanogaster) AI410349 mitochondrial ribosomal protein L16 Mrpl16 293754 NM_001009647 0006412 // translation // inferred from electronic annotation /// 0006412 // translation // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005762 // mitochondrial large ribosomal subunit // inferred from electronic annotation /// 0005762 // mitochondrial large ribosomal subunit // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // not recorded /// 0019843 // rRNA binding // inferred from electronic annotation 1371968_at AI013781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013781 /DB_XREF=gi:3227837 /DB_XREF=EST208456 /CLONE=RSPBS76 /FEA=EST /CNT=22 /TID=Rn.9480.1 /TIER=Stack /STK=14 /UG=Rn.9480 /UG_TITLE=ESTs, Weakly similar to S19586 N-methyl-D-aspartate receptor glutamate-binding chain - rat (R.norvegicus) AI013781 transmembrane BAX inhibitor motif containing 4 Tmbim4 362884 NM_199116 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1371969_at BI291848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291848 /DB_XREF=gi:14951790 /DB_XREF=UI-R-DN0-cit-p-10-0-UI.s1 /CLONE=UI-R-DN0-cit-p-10-0-UI /FEA=EST /CNT=19 /TID=Rn.6899.1 /TIER=Stack /STK=14 /UG=Rn.6899 /UG_TITLE=ESTs BI291848 1371970_at AA799328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799328 /DB_XREF=gi:2862283 /DB_XREF=EST188825 /CLONE=RHEAA34 /FEA=EST /CNT=19 /TID=Rn.757.1 /TIER=Stack /STK=14 /UG=Rn.757 /UG_TITLE=ESTs AA799328 family with sequence similarity 111, member A Fam111a 499322 NM_001109163 0003824 // catalytic activity // inferred from electronic annotation 1371971_at AI599676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599676 /DB_XREF=gi:4608724 /DB_XREF=EST251379 /CLONE=REMEN28 /FEA=EST /CNT=19 /TID=Rn.17311.1 /TIER=Stack /STK=14 /UG=Rn.17311 /UG_TITLE=ESTs, Highly similar to dim1 (S. pombe) (Mus musculus) (M.musculus) AI599676 similar to DNA segment, Chr 18, Wayne State University 98, expressed RGD1560212 498890 NM_001077676 0007067 // mitosis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005681 // spliceosomal complex // inferred from electronic annotation 0008080 // N-acetyltransferase activity // inferred from electronic annotation 1371972_at BM388888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388888 /DB_XREF=gi:18188941 /DB_XREF=UI-R-DZ0-ckn-o-18-0-UI.s1 /CLONE=UI-R-DZ0-ckn-o-18-0-UI /FEA=EST /CNT=19 /TID=Rn.2240.1 /TIER=Stack /STK=14 /UG=Rn.2240 /UG_TITLE=ESTs BM388888 1371973_at AI237620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237620 /DB_XREF=gi:3831126 /DB_XREF=EST234182 /CLONE=RPLDB54 /FEA=EST /CNT=19 /TID=Rn.12994.1 /TIER=Stack /STK=14 /UG=Rn.12994 /UG_TITLE=ESTs, Highly similar to IF36_HUMAN EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 6 (M.musculus) AI237620 eukaryotic translation initiation factor 3, subunit E Eif3e 299872 NM_001011990 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // not recorded /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from sequence or structural similarity /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // not recorded /// 0006413 // translational initiation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from sequence or structural similarity /// 0016605 // PML body // not recorded 0003743 // translation initiation factor activity // not recorded /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0047485 // protein N-terminus binding // not recorded 1371974_at BI275763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275763 /DB_XREF=gi:14919995 /DB_XREF=UI-R-CX0-bxg-d-03-0-UI.s1 /CLONE=UI-R-CX0-bxg-d-03-0-UI /FEA=EST /CNT=19 /TID=Rn.32623.1 /TIER=Stack /STK=14 /UG=Rn.32623 /UG_TITLE=ESTs, Weakly similar to NFC2 MOUSE NUCLEAR FACTOR OF ACTIVATED T-CELLS, CYTOPLASMIC 2 (M.musculus) BI275763 phytanoyl-CoA dioxygenase domain containing 1 Phyhd1 296621 NM_001013081 0055114 // oxidation reduction // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1371975_at BG377343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377343 /DB_XREF=gi:13301815 /DB_XREF=UI-R-CU0-bvc-d-04-0-UI.s1 /CLONE=UI-R-CU0-bvc-d-04-0-UI /FEA=EST /CNT=18 /TID=Rn.11607.1 /TIER=Stack /STK=14 /UG=Rn.11607 /UG_TITLE=ESTs BG377343 1371976_at AI102758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102758 /DB_XREF=gi:3707447 /DB_XREF=EST212047 /CLONE=REMBS14 /FEA=EST /CNT=18 /TID=Rn.8558.1 /TIER=Stack /STK=14 /UG=Rn.8558 /UG_TITLE=ESTs AI102758 similar to RIKEN cDNA 9530058B02 RGD1311273 685545 NM_001109475 1371977_at BG381477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381477 /DB_XREF=gi:13305949 /DB_XREF=UI-R-CT0-buj-g-08-0-UI.s1 /CLONE=UI-R-CT0-buj-g-08-0-UI /FEA=EST /CNT=18 /TID=Rn.4233.1 /TIER=Stack /STK=14 /UG=Rn.4233 /UG_TITLE=ESTs, Highly similar to AR21_HUMAN ARP23 COMPLEX 21 KD SUBUNIT (H.sapiens) BG381477 actin related protein 2/3 complex, subunit 3 Arpc3 288669 NM_001105933 0030833 // regulation of actin filament polymerization // inferred from electronic annotation 0005856 // cytoskeleton // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371978_at AI406375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406375 /DB_XREF=gi:4249879 /DB_XREF=EST234661 /CLONE=RBRDM89 /FEA=EST /CNT=27 /TID=Rn.3535.1 /TIER=Stack /STK=14 /UG=Rn.3535 /UG_TITLE=ESTs, Weakly similar to T34029 hypothetical protein C32F10.1 - Caenorhabditis elegans (C.elegans) AI406375 oxysterol binding protein-like 9 Osbpl9 298369 NM_001044234 0008202 // steroid metabolic process // inferred from electronic annotation 1371979_at AI170663 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170663 /DB_XREF=gi:3710703 /DB_XREF=EST216598 /CLONE=RMUAZ62 /FEA=EST /CNT=20 /TID=Rn.2846.1 /TIER=Stack /STK=14 /UG=Rn.2846 /UG_TITLE=ESTs, Weakly similar to A48085 transcription factor ADD1 - rat (R.norvegicus) AI170663 sterol regulatory element binding transcription factor 2 Srebf2 300095 NM_001033694 0006350 // transcription // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // traceable author statement /// 0009725 // response to hormone stimulus // inferred from mutant phenotype /// 0010288 // response to lead ion // inferred from expression pattern /// 0033993 // response to lipid // inferred from expression pattern /// 0035104 // positive regulation of transcription via sterol regulatory element binding // inferred from electronic annotation /// 0035104 // positive regulation of transcription via sterol regulatory element binding // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0012507 // ER to Golgi transport vesicle membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032937 // SREBP-SCAP-Insig complex // inferred from electronic annotation /// 0032937 // SREBP-SCAP-Insig complex // not recorded 0000247 // C-8 sterol isomerase activity // not recorded /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003704 // specific RNA polymerase II transcription factor activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay 1371980_at BI277552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277552 /DB_XREF=gi:14923536 /DB_XREF=UI-R-CY0-bxs-e-10-0-UI.s1 /CLONE=UI-R-CY0-bxs-e-10-0-UI /FEA=EST /CNT=19 /TID=Rn.17450.1 /TIER=Stack /STK=14 /UG=Rn.17450 /UG_TITLE=ESTs, Weakly similar to T22612 hypothetical protein F54B3.3 - Caenorhabditis elegans (C.elegans) BI277552 ATPase family, AAA domain containing 3A Atad3a 298682 NM_001034922 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1371981_at BI294700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294700 /DB_XREF=gi:14957410 /DB_XREF=UI-R-DK0-ceb-a-09-0-UI.s1 /CLONE=UI-R-DK0-ceb-a-09-0-UI /FEA=EST /CNT=19 /TID=Rn.19717.1 /TIER=Stack /STK=14 /UG=Rn.19717 /UG_TITLE=ESTs, Highly similar to JC5699 Down syndrome critical protein A - mouse (M.musculus) BI294700 Down syndrome critical region gene 3 Dscr3 360703 NM_001108316 0007034 // vacuolar transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0030904 // retromer complex // inferred from electronic annotation 1371982_at AI411960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411960 /DB_XREF=gi:4255464 /DB_XREF=EST240254 /CLONE=RKIER72 /FEA=EST /CNT=19 /TID=Rn.3297.1 /TIER=Stack /STK=14 /UG=Rn.3297 /UG_TITLE=ESTs, Highly similar to DP30_MOUSE Dpy-30-like protein (M.musculus) AI411960 dpy-30 homolog (C. elegans) Dpy30 286897 NM_001170545 /// NM_173117 0006350 // transcription // inferred from electronic annotation /// 0016197 // endosome transport // not recorded /// 0016197 // endosome transport // inferred from sequence or structural similarity /// 0016568 // chromatin modification // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051568 // histone H3-K4 methylation // not recorded /// 0051568 // histone H3-K4 methylation // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005802 // trans-Golgi network // inferred from sequence or structural similarity /// 0035097 // histone methyltransferase complex // not recorded /// 0035097 // histone methyltransferase complex // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1371983_at AA945181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945181 /DB_XREF=gi:4132514 /DB_XREF=EST200680 /CLONE=RLIAH57 /FEA=EST /CNT=18 /TID=Rn.2495.1 /TIER=Stack /STK=14 /UG=Rn.2495 /UG_TITLE=ESTs AA945181 Josephin domain containing 1 Josd1 315134 NM_001025009 1371984_at AI598442 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598442 /DB_XREF=gi:4607490 /DB_XREF=EST250145 /CLONE=REMDP62 /FEA=EST /CNT=18 /TID=Rn.768.1 /TIER=Stack /STK=14 /UG=Rn.768 /UG_TITLE=ESTs AI598442 1371985_a_at BE097389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097389 /DB_XREF=gi:8488320 /DB_XREF=UI-R-BO1-apq-h-07-0-UI.s1 /CLONE=UI-R-BO1-apq-h-07-0-UI /FEA=EST /CNT=18 /TID=Rn.25187.1 /TIER=Stack /STK=14 /UG=Rn.25187 /UG_TITLE=ESTs BE097389 HLA-B associated transcript 5 Bat5 361796 NM_212531 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371986_at AI576652 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576652 /DB_XREF=gi:4561028 /DB_XREF=UI-R-Y0-ve-b-03-0-UI.s2 /CLONE=UI-R-Y0-ve-b-03-0-UI /FEA=EST /CNT=17 /TID=Rn.1876.1 /TIER=Stack /STK=14 /UG=Rn.1876 /UG_TITLE=ESTs AI576652 1371987_at BI274697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274697 /DB_XREF=gi:14885854 /DB_XREF=UI-R-CX0-bws-h-08-0-UI.s1 /CLONE=UI-R-CX0-bws-h-08-0-UI /FEA=EST /CNT=17 /TID=Rn.22710.1 /TIER=Stack /STK=14 /UG=Rn.22710 /UG_TITLE=ESTs BI274697 polymerase (DNA directed) sigma Pols 306672 NM_001107333 0042493 // response to drug // not recorded 0005634 // nucleus // not recorded 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1371988_at AA892549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892549 /DB_XREF=gi:3019428 /DB_XREF=EST196352 /CLONE=RKIAS74 /FEA=EST /CNT=17 /TID=Rn.3576.1 /TIER=Stack /STK=14 /UG=Rn.3576 /UG_TITLE=ESTs AA892549 mannosidase, alpha, class 1A, member 1 Man1a1 294410 NM_001033656 0000139 // Golgi membrane // not recorded /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0005793 // ER-Golgi intermediate compartment // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004571 // mannosyl-oligosaccharide 1,2-alpha-mannosidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1371989_at BM386357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386357 /DB_XREF=gi:18186410 /DB_XREF=UI-R-CN1-cjf-b-10-0-UI.s1 /CLONE=UI-R-CN1-cjf-b-10-0-UI /FEA=EST /CNT=17 /TID=Rn.89.1 /TIER=Stack /STK=14 /UG=Rn.89 /UG_TITLE=ESTs, Weakly similar to S11349 nonhistone chromosomal protein HMG-17 - rat (R.norvegicus) BM386357 high mobility group nucleosomal binding domain 3 Hmgn3 113990 NM_001007020 0016568 // chromatin modification // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1371990_at AI012242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012242 /DB_XREF=gi:3226074 /DB_XREF=EST206693 /CLONE=RPLAU36 /FEA=EST /CNT=17 /TID=Rn.9023.1 /TIER=Stack /STK=14 /UG=Rn.9023 /UG_TITLE=ESTs AI012242 MPN domain containing Mpnd 681944 NM_001085406 1371991_at AA894318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894318 /DB_XREF=gi:3021197 /DB_XREF=EST198121 /CLONE=RSPAW53 /FEA=EST /CNT=17 /TID=Rn.4127.1 /TIER=Stack /STK=14 /UG=Rn.4127 /UG_TITLE=ESTs AA894318 1371992_at BG378110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378110 /DB_XREF=gi:13302582 /DB_XREF=UI-R-CV1-bvo-a-12-0-UI.s1 /CLONE=UI-R-CV1-bvo-a-12-0-UI /FEA=EST /CNT=17 /TID=Rn.7270.1 /TIER=Stack /STK=14 /UG=Rn.7270 /UG_TITLE=ESTs BG378110 similar to RIKEN cDNA 5430437P03 MGC94542 290631 NM_001006964 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // not recorded /// 0006302 // double-strand break repair // inferred from sequence or structural similarity /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010212 // response to ionizing radiation // not recorded /// 0010212 // response to ionizing radiation // inferred from sequence or structural similarity /// 0016568 // chromatin modification // inferred from electronic annotation /// 0031572 // G2/M transition DNA damage checkpoint // not recorded /// 0031572 // G2/M transition DNA damage checkpoint // inferred from sequence or structural similarity /// 0045739 // positive regulation of DNA repair // not recorded /// 0045739 // positive regulation of DNA repair // inferred from sequence or structural similarity /// 0070536 // protein K63-linked deubiquitination // not recorded /// 0070536 // protein K63-linked deubiquitination // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0070531 // BRCA1-A complex // not recorded /// 0070531 // BRCA1-A complex // inferred from sequence or structural similarity /// 0070552 // BRISC complex // not recorded /// 0070552 // BRISC complex // inferred from sequence or structural similarity 0005515 // protein binding // not recorded 1371993_at AI237636 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237636 /DB_XREF=gi:3831142 /DB_XREF=EST234198 /CLONE=RPLDB72 /FEA=EST /CNT=27 /TID=Rn.4034.1 /TIER=Stack /STK=14 /UG=Rn.4034 /UG_TITLE=ESTs, Weakly similar to CNE6_MOUSE COPINE VI (NEURONAL-COPINE) (N-COPINE) (M.musculus) AI237636 1371994_at AI412316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412316 /DB_XREF=gi:4255820 /DB_XREF=EST240614 /CLONE=RBRDV17 /FEA=EST /CNT=20 /TID=Rn.1972.1 /TIER=Stack /STK=14 /UG=Rn.1972 /UG_TITLE=ESTs AI412316 Rho GTPase activating protein 1 Arhgap1 311193 NM_001107747 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0043087 // regulation of GTPase activity // not recorded 0001726 // ruffle // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005886 // plasma membrane // not recorded /// 0031252 // cell leading edge // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005100 // Rho GTPase activator activity // not recorded /// 0005515 // protein binding // not recorded /// 0030675 // Rac GTPase activator activity // not recorded 1371995_at AI599225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599225 /DB_XREF=gi:4608273 /DB_XREF=EST250928 /CLONE=REMEC63 /FEA=EST /CNT=19 /TID=Rn.20232.1 /TIER=Stack /STK=14 /UG=Rn.20232 /UG_TITLE=ESTs AI599225 kelch-like 21 (Drosophila) Klhl21 313743 NM_001107996 0000910 // cytokinesis // not recorded /// 0000910 // cytokinesis // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation /// 0051322 // anaphase // not recorded /// 0051322 // anaphase // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005827 // polar microtubule // not recorded /// 0005827 // polar microtubule // inferred from sequence or structural similarity /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0031463 // Cul3-RING ubiquitin ligase complex // not recorded /// 0031463 // Cul3-RING ubiquitin ligase complex // inferred from sequence or structural similarity 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation 1371996_at AI232384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232384 /DB_XREF=gi:4135753 /DB_XREF=EST229072 /CLONE=RKICB05 /FEA=EST /CNT=18 /TID=Rn.1477.1 /TIER=Stack /STK=14 /UG=Rn.1477 /UG_TITLE=ESTs AI232384 1371997_at BM390833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390833 /DB_XREF=gi:18190886 /DB_XREF=UI-R-CN1-cjo-l-08-0-UI.s1 /CLONE=UI-R-CN1-cjo-l-08-0-UI /FEA=EST /CNT=18 /TID=Rn.4326.1 /TIER=Stack /STK=14 /UG=Rn.4326 /UG_TITLE=ESTs, Weakly similar to ALDOSE REDUCTASE (R.norvegicus) BM390833 aldo-keto reductase family 1, member C-like 2 Akr1cl2 307091 NM_001008342 0055114 // oxidation reduction // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050571 // 1,5-anhydro-D-fructose reductase activity // inferred from electronic annotation 1371998_at AI176611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176611 /DB_XREF=gi:3727249 /DB_XREF=EST220200 /CLONE=ROVBU51 /FEA=EST /CNT=17 /TID=Rn.24123.1 /TIER=Stack /STK=14 /UG=Rn.24123 /UG_TITLE=ESTs AI176611 MOB1, Mps One Binder kinase activator-like 1B (yeast) Mobkl1b 297387 NM_001033891 0035329 // hippo signaling cascade // inferred from electronic annotation /// 0035329 // hippo signaling cascade // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1371999_at BI303641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303641 /DB_XREF=gi:14979921 /DB_XREF=UI-R-DQ0-cja-l-02-0-UI.s1 /CLONE=UI-R-DQ0-cja-l-02-0-UI /FEA=EST /CNT=17 /TID=Rn.22812.1 /TIER=Stack /STK=14 /UG=Rn.22812 /UG_TITLE=ESTs BI303641 splicing factor, arginine/serine-rich 6 Sfrs6 362264 NM_001014185 0008380 // RNA splicing // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372000_at AI180187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180187 /DB_XREF=gi:4135222 /DB_XREF=EST223928 /CLONE=RSPCR63 /FEA=EST /CNT=17 /TID=Rn.3889.1 /TIER=Stack /STK=14 /UG=Rn.3889 /UG_TITLE=ESTs AI180187 neuroepithelial cell transforming 1 Net1 307098 NM_001039023 0006915 // apoptosis // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1372001_at BF554893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554893 /DB_XREF=gi:11664623 /DB_XREF=UI-R-E0-cd-b-02-0-UI.r1 /CLONE=UI-R-E0-cd-b-02-0-UI /FEA=EST /CNT=17 /TID=Rn.2631.1 /TIER=Stack /STK=14 /UG=Rn.2631 /UG_TITLE=ESTs, Weakly similar to T22242 hypothetical protein F45G2.10 - Caenorhabditis elegans (C.elegans) BF554893 family with sequence similarity 96, member B Fam96b 680987 NM_001144854 0005515 // protein binding // not recorded 1372002_at AI411352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411352 /DB_XREF=gi:4254856 /DB_XREF=EST239646 /CLONE=RKIEU84 /FEA=EST /CNT=17 /TID=Rn.2731.1 /TIER=Stack /STK=14 /UG=Rn.2731 /UG_TITLE=ESTs AI411352 gap junction protein, alpha 1 Gja1 24392 NM_012567 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0001947 // heart looping // inferred from electronic annotation /// 0001947 // heart looping // not recorded /// 0002070 // epithelial cell maturation // inferred from electronic annotation /// 0002070 // epithelial cell maturation // not recorded /// 0006915 // apoptosis // inferred from mutant phenotype /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007154 // cell communication // inferred from mutant phenotype /// 0007154 // cell communication // inferred from electronic annotation /// 0007267 // cell-cell signaling // inferred from direct assay /// 0007267 // cell-cell signaling // inferred from mutant phenotype /// 0007267 // cell-cell signaling // not recorded /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007512 // adult heart development // inferred from electronic annotation /// 0007512 // adult heart development // not recorded /// 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0008016 // regulation of heart contraction // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0009268 // response to pH // inferred from direct assay /// 0010232 // vascular transport // inferred from mutant phenotype /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // not recorded /// 0015867 // ATP transport // inferred from mutant phenotype /// 0016264 // gap junction assembly // traceable author statement /// 0035050 // embryonic heart tube development // inferred from electronic annotation /// 0035050 // embryonic heart tube development // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043403 // skeletal muscle tissue regeneration // inferred from electronic annotation /// 0043403 // skeletal muscle tissue regeneration // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045732 // positive regulation of protein catabolic process // inferred from direct assay /// 0045844 // positive regulation of striated muscle tissue development // inferred from electronic annotation /// 0045844 // positive regulation of striated muscle tissue development // not recorded /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // not recorded /// 0048812 // neuron projection morphogenesis // inferred from mutant phenotype /// 0051259 // protein oligomerization // inferred from direct assay /// 0051924 // regulation of calcium ion transport // inferred from mutant phenotype /// 0055085 // transmembrane transport // not recorded /// 0060174 // limb bud formation // inferred from electronic annotation /// 0060174 // limb bud formation // not recorded 0000139 // Golgi membrane // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0005771 // multivesicular body // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from mutant phenotype /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0005911 // cell-cell junction // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005916 // fascia adherens // inferred from direct assay /// 0005921 // gap junction // inferred from direct assay /// 0005921 // gap junction // not recorded /// 0005921 // gap junction // inferred from electronic annotation /// 0005922 // connexon complex // inferred from direct assay /// 0005922 // connexon complex // traceable author statement /// 0005922 // connexon complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030660 // Golgi-associated vesicle membrane // not recorded /// 0045121 // membrane raft // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005243 // gap junction channel activity // inferred from direct assay /// 0005243 // gap junction channel activity // not recorded /// 0005243 // gap junction channel activity // traceable author statement /// 0005243 // gap junction channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from direct assay /// 0022857 // transmembrane transporter activity // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction 1372003_at BI296755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296755 /DB_XREF=gi:14961499 /DB_XREF=UI-R-CV2-cgv-h-10-0-UI.s1 /CLONE=UI-R-CV2-cgv-h-10-0-UI /FEA=EST /CNT=17 /TID=Rn.17235.1 /TIER=Stack /STK=14 /UG=Rn.17235 /UG_TITLE=ESTs BI296755 transmembrane protein 87A Tmem87a 366170 XM_001075817 /// XM_002726163 /// XM_345422 0016021 // integral to membrane // inferred from electronic annotation 1372004_at AI102065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102065 /DB_XREF=gi:3706899 /DB_XREF=EST211354 /CLONE=RBRBY49 /FEA=EST /CNT=17 /TID=Rn.6886.1 /TIER=Stack /STK=14 /UG=Rn.6886 /UG_TITLE=ESTs AI102065 heme binding protein 1 Hebp1 362454 NM_001108651 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0020037 // heme binding // inferred from electronic annotation /// 0020037 // heme binding // not recorded 1372005_at BI294361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294361 /DB_XREF=gi:14956748 /DB_XREF=UI-R-DK0-ceh-h-08-0-UI.s1 /CLONE=UI-R-DK0-ceh-h-08-0-UI /FEA=EST /CNT=17 /TID=Rn.14959.1 /TIER=Stack /STK=14 /UG=Rn.14959 /UG_TITLE=ESTs BI294361 SRY (sex determining region Y)-box 12 Sox12 689988 NM_001168650 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1372006_at BM391274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391274 /DB_XREF=gi:18191327 /DB_XREF=UI-R-DY0-ckq-b-09-0-UI.s1 /CLONE=UI-R-DY0-ckq-b-09-0-UI /FEA=EST /CNT=16 /TID=Rn.954.1 /TIER=Stack /STK=14 /UG=Rn.954 /UG_TITLE=ESTs BM391274 1372007_at BE099064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099064 /DB_XREF=gi:8490940 /DB_XREF=UI-R-BJ1-atf-h-09-0-UI.s1 /CLONE=UI-R-BJ1-atf-h-09-0-UI /FEA=EST /CNT=16 /TID=Rn.8660.1 /TIER=Stack /STK=14 /UG=Rn.8660 /UG_TITLE=ESTs BE099064 lysine (K)-specific demethylase 1 Kdm1 500569 NM_001130098 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016577 // histone demethylation // inferred from electronic annotation /// 0021983 // pituitary gland development // not recorded /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0033169 // histone H3-K9 demethylation // not recorded /// 0034339 // regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor // not recorded /// 0034720 // histone H3-K4 demethylation // not recorded /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046886 // positive regulation of hormone biosynthetic process // not recorded /// 0046886 // positive regulation of hormone biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded /// 0032452 // histone demethylase activity // not recorded /// 0032453 // histone demethylase activity (H3-K4 specific) // not recorded /// 0032454 // histone demethylase activity (H3-K9 specific) // not recorded /// 0034648 // histone demethylase activity (H3-dimethyl-K4 specific) // not recorded /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // not recorded /// 0050681 // androgen receptor binding // not recorded 1372008_at BM385175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385175 /DB_XREF=gi:18185228 /DB_XREF=UI-R-CN1-cjm-p-02-0-UI.s2 /CLONE=UI-R-CN1-cjm-p-02-0-UI /FEA=EST /CNT=16 /TID=Rn.7267.1 /TIER=Stack /STK=14 /UG=Rn.7267 /UG_TITLE=ESTs BM385175 tafazzin Taz 363521 NM_001025748 0001933 // negative regulation of protein phosphorylation // not recorded /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006936 // muscle contraction // not recorded /// 0007507 // heart development // not recorded /// 0007519 // skeletal muscle tissue development // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded /// 0032049 // cardiolipin biosynthetic process // not recorded /// 0032981 // mitochondrial respiratory chain complex I assembly // not recorded /// 0035329 // hippo signaling cascade // not recorded /// 0035414 // negative regulation of catenin protein nuclear translocation // not recorded /// 0042407 // cristae formation // not recorded /// 0042775 // mitochondrial ATP synthesis coupled electron transport // not recorded /// 0048738 // cardiac muscle tissue development // not recorded /// 0060048 // cardiac muscle contraction // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0047184 // 1-acylglycerophosphocholine O-acyltransferase activity // not recorded 1372009_at AI407490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407490 /DB_XREF=gi:4250994 /DB_XREF=EST235779 /CLONE=ROVDU13 /FEA=EST /CNT=16 /TID=Rn.17197.1 /TIER=Stack /STK=14 /UG=Rn.17197 /UG_TITLE=ESTs AI407490 tyrosyl-tRNA synthetase Yars 313047 NM_001025696 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006437 // tyrosyl-tRNA aminoacylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000049 // tRNA binding // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004831 // tyrosine-tRNA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1372010_at BF283797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283797 /DB_XREF=gi:11214867 /DB_XREF=EST448388 /CLONE=RGIEG89 /FEA=EST /CNT=16 /TID=Rn.17463.1 /TIER=Stack /STK=14 /UG=Rn.17463 /UG_TITLE=ESTs, Weakly similar to CALCIUMCALMODULIN-DEPENDENT PROTEIN KINASE TYPE I (R.norvegicus) BF283797 mitogen-activated protein kinase-activated protein kinase 5 Mapkapk5 498183 NM_001025761 /// NM_001164043 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1372011_at BI292028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292028 /DB_XREF=gi:14952131 /DB_XREF=UI-R-DN0-ciu-e-04-0-UI.s1 /CLONE=UI-R-DN0-ciu-e-04-0-UI /FEA=EST /CNT=16 /TID=Rn.9477.1 /TIER=Stack /STK=14 /UG=Rn.9477 /UG_TITLE=ESTs BI292028 1372012_at BF417479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417479 /DB_XREF=gi:11405468 /DB_XREF=UI-R-CN0-blg-f-03-0-UI.s1 /CLONE=UI-R-CN0-blg-f-03-0-UI /FEA=EST /CNT=16 /TID=Rn.9470.1 /TIER=Stack /STK=14 /UG=Rn.9470 /UG_TITLE=ESTs BF417479 24-dehydrocholesterol reductase Dhcr24 298298 NM_001080148 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // not recorded /// 0006695 // cholesterol biosynthetic process // inferred from sequence or structural similarity /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from sequence or structural similarity /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0006979 // response to oxidative stress // inferred from sequence or structural similarity /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // inferred from mutant phenotype /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0008202 // steroid metabolic process // inferred from mutant phenotype /// 0008203 // cholesterol metabolic process // not recorded /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0009888 // tissue development // not recorded /// 0009888 // tissue development // inferred from sequence or structural similarity /// 0009888 // tissue development // inferred from electronic annotation /// 0016044 // cellular membrane organization // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016125 // sterol metabolic process // not recorded /// 0016125 // sterol metabolic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0030539 // male genitalia development // inferred from electronic annotation /// 0030539 // male genitalia development // not recorded /// 0031639 // plasminogen activation // inferred from electronic annotation /// 0031639 // plasminogen activation // not recorded /// 0042987 // amyloid precursor protein catabolic process // inferred from electronic annotation /// 0042987 // amyloid precursor protein catabolic process // not recorded /// 0043154 // negative regulation of caspase activity // not recorded /// 0043154 // negative regulation of caspase activity // inferred from sequence or structural similarity /// 0043154 // negative regulation of caspase activity // inferred from electronic annotation /// 0043588 // skin development // inferred from sequence or structural similarity /// 0043588 // skin development // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005856 // cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // non-traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016628 // oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor // not recorded /// 0016628 // oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from sequence or structural similarity /// 0019899 // enzyme binding // inferred from electronic annotation /// 0042605 // peptide antigen binding // not recorded /// 0042605 // peptide antigen binding // inferred from sequence or structural similarity /// 0042605 // peptide antigen binding // inferred from electronic annotation /// 0050614 // delta24-sterol reductase activity // inferred by curator /// 0050614 // delta24-sterol reductase activity // not recorded /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1372013_at BG380285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380285 /DB_XREF=gi:13304757 /DB_XREF=UI-R-CS0-btv-c-08-0-UI.s1 /CLONE=UI-R-CS0-btv-c-08-0-UI /FEA=EST /CNT=16 /TID=Rn.22087.1 /TIER=Stack /STK=14 /UG=Rn.22087 /UG_TITLE=ESTs, Moderately similar to JC1241 beta-interferon-induced protein - rat (R.norvegicus) BG380285 interferon induced transmembrane protein 1 Ifitm1 293618 NM_001106314 0009607 // response to biotic stimulus // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 1372014_at BM392138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392138 /DB_XREF=gi:18192191 /DB_XREF=UI-R-DO1-ckp-c-08-0-UI.s1 /CLONE=UI-R-DO1-ckp-c-08-0-UI /FEA=EST /CNT=16 /TID=Rn.3979.2 /TIER=Stack /STK=14 /UG=Rn.3979 /LL=114106 /UG_GENE=Bcdo /UG_TITLE=beta-carotene 15, 15-dioxygenase BM392138 mediator complex subunit 27 Med27 296612 NM_001106565 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded 1372015_at AI008689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008689 /DB_XREF=gi:3222521 /DB_XREF=EST203140 /CLONE=REMBB67 /FEA=EST /CNT=24 /TID=Rn.2309.1 /TIER=Stack /STK=14 /UG=Rn.2309 /UG_TITLE=ESTs, Weakly similar to TAC1_HUMAN TRANSFORMING ACIDIC COILED-COIL-CONTAINING PROTEIN 1 (H.sapiens) AI008689 transforming, acidic coiled-coil containing protein 1 Tacc1 306562 NM_001004107 0000226 // microtubule cytoskeleton organization // not recorded /// 0008283 // cell proliferation // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0022008 // neurogenesis // not recorded /// 0022027 // interkinetic nuclear migration // not recorded /// 0032886 // regulation of microtubule-based process // not recorded 0005515 // protein binding // not recorded /// 0019904 // protein domain specific binding // not recorded 1372016_at BI287978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287978 /DB_XREF=gi:14944111 /DB_XREF=UI-R-CX0s-ccw-e-10-0-UI.s1 /CLONE=UI-R-CX0s-ccw-e-10-0-UI /FEA=EST /CNT=19 /TID=Rn.35886.1 /TIER=Stack /STK=14 /UG=Rn.35886 /UG_TITLE=ESTs, Weakly similar to 2104282A Gadd45 gene (R.norvegicus) BI287978 growth arrest and DNA-damage-inducible, beta Gadd45b 299626 NM_001008321 0000186 // activation of MAPKK activity // inferred from electronic annotation /// 0000186 // activation of MAPKK activity // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372017_at BE110572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110572 /DB_XREF=gi:8502677 /DB_XREF=UI-R-BJ1-avt-e-10-0-UI.s1 /CLONE=UI-R-BJ1-avt-e-10-0-UI /FEA=EST /CNT=18 /TID=Rn.9090.1 /TIER=Stack /STK=14 /UG=Rn.9090 /UG_TITLE=ESTs, Moderately similar to A Chain A, Crystal Structure Of SmacDIABLO (H.sapiens) BE110572 diablo homolog (Drosophila) Diablo 288753 NM_001008292 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0008631 // induction of apoptosis by oxidative stress // not recorded /// 0043065 // positive regulation of apoptosis // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372018_at BM392107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392107 /DB_XREF=gi:18192160 /DB_XREF=UI-R-DO1-ckp-m-13-0-UI.s1 /CLONE=UI-R-DO1-ckp-m-13-0-UI /FEA=EST /CNT=17 /TID=Rn.1443.1 /TIER=Stack /STK=14 /UG=Rn.1443 /UG_TITLE=ESTs BM392107 CDC42 binding protein kinase beta (DMPK-like) Cdc42bpb 113960 NM_053620 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from mutant phenotype /// 0031532 // actin cytoskeleton reorganization // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from sequence or structural similarity /// 0031252 // cell leading edge // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1372019_at AI231789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231789 /DB_XREF=gi:3815669 /DB_XREF=EST228477 /CLONE=RHECO30 /FEA=EST /CNT=17 /TID=Rn.1773.1 /TIER=Stack /STK=14 /UG=Rn.1773 /UG_TITLE=ESTs, Weakly similar to T24720 hypothetical protein T09A5.6 - Caenorhabditis elegans (C.elegans) AI231789 mediator complex subunit 10 Med10 290939 NM_001106097 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0016592 // mediator complex // inferred from electronic annotation 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation 1372020_at BI285561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285561 /DB_XREF=gi:14939337 /DB_XREF=UI-R-CW0s-ccb-f-01-0-UI.s1 /CLONE=UI-R-CW0s-ccb-f-01-0-UI /FEA=EST /CNT=17 /TID=Rn.2976.1 /TIER=Stack /STK=14 /UG=Rn.2976 /UG_TITLE=ESTs, Moderately similar to B Chain B, Vhs Domain Of Tom1 Protein From H. Sapien (H.sapiens) BI285561 target of myb1 homolog (chicken) Tom1 361370 NM_001008365 0006886 // intracellular protein transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005769 // early endosome // not recorded /// 0005813 // centrosome // not recorded /// 0005829 // cytosol // not recorded /// 0016020 // membrane // not recorded 0005515 // protein binding // not recorded 1372021_at AI102685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102685 /DB_XREF=gi:3707396 /DB_XREF=EST211974 /CLONE=REMBR06 /FEA=EST /CNT=16 /TID=Rn.11918.1 /TIER=Stack /STK=14 /UG=Rn.11918 /UG_TITLE=ESTs AI102685 nucleoporin 188 Nup188 366016 XM_001077334 /// XM_345335 0005635 // nuclear envelope // not recorded 0005515 // protein binding // not recorded 1372022_at BI283822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283822 /DB_XREF=gi:14935943 /DB_XREF=UI-R-CX0s-ccx-b-02-0-UI.s1 /CLONE=UI-R-CX0s-ccx-b-02-0-UI /FEA=EST /CNT=16 /TID=Rn.9105.1 /TIER=Stack /STK=14 /UG=Rn.9105 /UG_TITLE=ESTs, Weakly similar to T08696 hypothetical protein DKFZp564A043.1 (H.sapiens) BI283822 1372023_at BI279581 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279581 /DB_XREF=gi:14927534 /DB_XREF=UI-R-DE0-cae-c-04-0-UI.s1 /CLONE=UI-R-DE0-cae-c-04-0-UI /FEA=EST /CNT=16 /TID=Rn.7314.1 /TIER=Stack /STK=14 /UG=Rn.7314 /UG_TITLE=ESTs BI279581 hypothetical protein LOC100361542 LOC100361542 100361542 XM_002728442 1372024_at AI104846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104846 /DB_XREF=gi:3709106 /DB_XREF=EST214135 /CLONE=RHECK31 /FEA=EST /CNT=16 /TID=Rn.23401.1 /TIER=Stack /STK=14 /UG=Rn.23401 /UG_TITLE=ESTs AI104846 1372025_at BI296467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296467 /DB_XREF=gi:14960918 /DB_XREF=UI-R-CV2-cgr-e-08-0-UI.s1 /CLONE=UI-R-CV2-cgr-e-08-0-UI /FEA=EST /CNT=16 /TID=Rn.19473.1 /TIER=Stack /STK=14 /UG=Rn.19473 /UG_TITLE=ESTs BI296467 1372026_at BI282651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282651 /DB_XREF=gi:14933632 /DB_XREF=UI-R-CW0s-ccd-e-08-0-UI.s1 /CLONE=UI-R-CW0s-ccd-e-08-0-UI /FEA=EST /CNT=16 /TID=Rn.4038.1 /TIER=Stack /STK=14 /UG=Rn.4038 /UG_TITLE=ESTs BI282651 similar to RIKEN cDNA 9430023L20 RGD1359310 300240 NM_001007659 0000045 // autophagic vacuole assembly // inferred from electronic annotation /// 0000045 // autophagic vacuole assembly // not recorded /// 0006914 // autophagy // inferred from electronic annotation 0000407 // pre-autophagosomal structure // inferred from electronic annotation /// 0000407 // pre-autophagosomal structure // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0032403 // protein complex binding // inferred from electronic annotation /// 0032403 // protein complex binding // not recorded 1372027_at AI009713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009713 /DB_XREF=gi:3223545 /DB_XREF=EST204164 /CLONE=RLUBN59 /FEA=EST /CNT=16 /TID=Rn.7760.1 /TIER=Stack /STK=14 /UG=Rn.7760 /UG_TITLE=ESTs AI009713 1372028_at AA893215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893215 /DB_XREF=gi:3020094 /DB_XREF=EST197018 /CLONE=RKIBD63 /FEA=EST /CNT=15 /TID=Rn.6090.1 /TIER=Stack /STK=14 /UG=Rn.6090 /UG_TITLE=ESTs, Moderately similar to YCB7_HUMAN HYPOTHETICAL PROTEIN CGI-117 (H.sapiens) AA893215 NOP16 nucleolar protein homolog (yeast) Nop16 306768 NM_001047095 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 1372029_at BI281957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281957 /DB_XREF=gi:14932230 /DB_XREF=UI-R-CU0s-cbu-f-07-0-UI.s1 /CLONE=UI-R-CU0s-cbu-f-07-0-UI /FEA=EST /CNT=15 /TID=Rn.9506.1 /TIER=Stack /STK=14 /UG=Rn.9506 /UG_TITLE=ESTs, Moderately similar to cargo selection protein TIP47 (H.sapiens) BI281957 1372030_at BI283114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283114 /DB_XREF=gi:14934538 /DB_XREF=UI-R-CU0s-cca-b-08-0-UI.s1 /CLONE=UI-R-CU0s-cca-b-08-0-UI /FEA=EST /CNT=15 /TID=Rn.2468.1 /TIER=Stack /STK=14 /UG=Rn.2468 /UG_TITLE=ESTs, Weakly similar to FYV1 MOUSE FYVE FINGER-CONTAINING PHOSPHOINOSITIDE KINASE (M.musculus) BI283114 zinc finger, FYVE domain containing 21 Zfyve21 362789 NM_001108725 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372031_at AI407821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407821 /DB_XREF=gi:4251325 /DB_XREF=EST236111 /CLONE=ROVDY53 /FEA=EST /CNT=15 /TID=Rn.2548.1 /TIER=Stack /STK=14 /UG=Rn.2548 /UG_TITLE=ESTs AI407821 1372032_at AA851914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851914 /DB_XREF=gi:4131986 /DB_XREF=EST194683 /CLONE=RSPAO30 /FEA=EST /CNT=15 /TID=Rn.1908.1 /TIER=Stack /STK=14 /UG=Rn.1908 /UG_TITLE=ESTs AA851914 1372033_at BM385414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385414 /DB_XREF=gi:18185467 /DB_XREF=UI-R-CN1-clv-n-17-0-UI.s1 /CLONE=UI-R-CN1-clv-n-17-0-UI /FEA=EST /CNT=15 /TID=Rn.3411.1 /TIER=Stack /STK=14 /UG=Rn.3411 /UG_TITLE=ESTs, Weakly similar to E.coli YCAC like (Caenorhabditis elegans) (C.elegans) BM385414 isochorismatase domain containing 2b Isoc2b 361501 NM_001008367 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation 1372034_at BF284106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284106 /DB_XREF=gi:11215176 /DB_XREF=EST448697 /CLONE=RGIEL08 /FEA=EST /CNT=15 /TID=Rn.17745.1 /TIER=Stack /STK=14 /UG=Rn.17745 /UG_TITLE=ESTs BF284106 poly (ADP-ribose) polymerase family, member 14 Parp14 303903 NM_001191659 /// XM_001071334 /// XM_221401 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // not recorded 1372035_at BG381014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381014 /DB_XREF=gi:13305486 /DB_XREF=UI-R-CT0-bug-b-05-0-UI.s1 /CLONE=UI-R-CT0-bug-b-05-0-UI /FEA=EST /CNT=15 /TID=Rn.36626.1 /TIER=Stack /STK=14 /UG=Rn.36626 /UG_TITLE=ESTs BG381014 intraflagellar transport 52 homolog (Chlamydomonas) Ift52 362265 NM_001177685 /// XM_002726291 /// XM_002729251 1372036_at BG378032 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378032 /DB_XREF=gi:13302504 /DB_XREF=UI-R-CT0-bvn-a-10-0-UI.s1 /CLONE=UI-R-CT0-bvn-a-10-0-UI /FEA=EST /CNT=15 /TID=Rn.14633.1 /TIER=Stack /STK=14 /UG=Rn.14633 /UG_TITLE=ESTs BG378032 Cd2 (cytoplasmic tail) binding protein 2 Cd2bp2 293505 NM_001106297 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005682 // U5 snRNP // inferred from electronic annotation /// 0005682 // U5 snRNP // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded /// 0046540 // U4/U6 x U5 tri-snRNP complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043021 // ribonucleoprotein binding // inferred from electronic annotation /// 0043021 // ribonucleoprotein binding // not recorded 1372037_at AI104117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104117 /DB_XREF=gi:4134229 /DB_XREF=EST213406 /CLONE=RHEBX49 /FEA=EST /CNT=15 /TID=Rn.7274.2 /TIER=Stack /STK=14 /UG=Rn.7274 /UG_TITLE=Rattus norvegicus LIM-domain protein LMP-1 mRNA, complete cds AI104117 PDZ and LIM domain 7 Pdlim7 286908 NM_173125 0001503 // ossification // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // inferred from direct assay 0001725 // stress fiber // inferred from electronic annotation /// 0001725 // stress fiber // not recorded /// 0001726 // ruffle // inferred from electronic annotation /// 0001726 // ruffle // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030054 // cell junction // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372038_at BM383395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383395 /DB_XREF=gi:18183448 /DB_XREF=UI-R-DM1-cka-o-21-0-UI.s1 /CLONE=UI-R-DM1-cka-o-21-0-UI /FEA=EST /CNT=21 /TID=Rn.6769.1 /TIER=Stack /STK=14 /UG=Rn.6769 /UG_TITLE=ESTs BM383395 MAP kinase-interacting serine/threonine kinase 2 Mknk2 299618 NM_001011985 0006417 // regulation of translation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372039_at AI406810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406810 /DB_XREF=gi:4250314 /DB_XREF=EST235097 /CLONE=RBRDJ04 /FEA=EST /CNT=16 /TID=Rn.15038.1 /TIER=Stack /STK=14 /UG=Rn.15038 /UG_TITLE=ESTs AI406810 NFKB inhibitor interacting Ras-like 2 Nkiras2 287707 NM_001105839 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1372040_at BI296029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296029 /DB_XREF=gi:14960062 /DB_XREF=UI-R-DK0-cfd-e-09-0-UI.s1 /CLONE=UI-R-DK0-cfd-e-09-0-UI /FEA=EST /CNT=16 /TID=Rn.13745.1 /TIER=Stack /STK=14 /UG=Rn.13745 /UG_TITLE=ESTs BI296029 calmodulin binding transcription activator 2 Camta2 287462 NM_001105801 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0014898 // cardiac muscle hypertrophy in response to stress // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003682 // chromatin binding // not recorded /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded 1372041_at BI290059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290059 /DB_XREF=gi:14948271 /DB_XREF=UI-R-DK0-cfr-d-03-0-UI.s1 /CLONE=UI-R-DK0-cfr-d-03-0-UI /FEA=EST /CNT=16 /TID=Rn.10238.3 /TIER=Stack /STK=14 /UG=Rn.10238 /LL=58948 /UG_GENE=Dlgh3 /UG_TITLE=discs, large homolog 3 (Drosophila) BI290059 1372042_at BI294844 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294844 /DB_XREF=gi:14957694 /DB_XREF=UI-R-DK0-cec-g-11-0-UI.s1 /CLONE=UI-R-DK0-cec-g-11-0-UI /FEA=EST /CNT=16 /TID=Rn.15332.1 /TIER=Stack /STK=14 /UG=Rn.15332 /UG_TITLE=ESTs BI294844 CKLF-like MARVEL transmembrane domain containing 3 Cmtm3 291813 NM_001106164 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1372043_at BI282363 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282363 /DB_XREF=gi:14933056 /DB_XREF=UI-R-CU0s-cbz-g-04-0-UI.s1 /CLONE=UI-R-CU0s-cbz-g-04-0-UI /FEA=EST /CNT=16 /TID=Rn.24892.1 /TIER=Stack /STK=14 /UG=Rn.24892 /UG_TITLE=ESTs, Weakly similar to F10E7.5.p (Caenorhabditis elegans) (C.elegans) BI282363 mRNA turnover 4 homolog (S. cerevisiae) Mrto4 298586 NM_001106697 0042254 // ribosome biogenesis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 1372044_at AI410321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410321 /DB_XREF=gi:4253825 /DB_XREF=EST238614 /CLONE=RKIDM17 /FEA=EST /CNT=15 /TID=Rn.36719.1 /TIER=Stack /STK=14 /UG=Rn.36719 /UG_TITLE=ESTs, Highly similar to SERTHR-RICH PROTEIN T10 IN DGCR REGION (M.musculus) AI410321 similar to Ser/Thr-rich protein T10 in DGCR region RGD1310348 360738 NM_001108323 1372045_at BE112941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112941 /DB_XREF=gi:8505046 /DB_XREF=UI-R-BJ1-awa-f-04-0-UI.s1 /CLONE=UI-R-BJ1-awa-f-04-0-UI /FEA=EST /CNT=15 /TID=Rn.13976.1 /TIER=Stack /STK=14 /UG=Rn.13976 /UG_TITLE=ESTs BE112941 adaptor-related protein complex 1, mu 1 subunit Ap1m1 306332 NM_001044239 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0030665 // clathrin coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372046_at BG378725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378725 /DB_XREF=gi:13303197 /DB_XREF=UI-R-CV1-bvs-b-03-0-UI.s1 /CLONE=UI-R-CV1-bvs-b-03-0-UI /FEA=EST /CNT=15 /TID=Rn.6721.1 /TIER=Stack /STK=14 /UG=Rn.6721 /UG_TITLE=ESTs, Moderately similar to T46268 hypothetical protein DKFZp761E129.1 (H.sapiens) BG378725 general transcription factor IIIC, polypeptide 3 Gtf3c3 316810 NM_001108239 0000127 // transcription factor TFIIIC complex // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372047_at BI285146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285146 /DB_XREF=gi:14938492 /DB_XREF=UI-R-DB0-byw-f-10-0-UI.s1 /CLONE=UI-R-DB0-byw-f-10-0-UI /FEA=EST /CNT=14 /TID=Rn.79267.1 /TIER=Stack /STK=14 /UG=Rn.79267 /UG_TITLE=ESTs, Moderately similar to 22P2 RAT CYSTATIN RELATED PROTEIN 2 PRECURSOR (R.norvegicus) BI285146 similar to Cystatin-related protein 2 precursor (Prostatic 22 kDa glycoprotein P22K15) RGD1563136 296230 XM_001057954 /// XM_215875 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation 1372048_at BI276946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276946 /DB_XREF=gi:14922346 /DB_XREF=UI-R-CW0-bxo-c-11-0-UI.s1 /CLONE=UI-R-CW0-bxo-c-11-0-UI /FEA=EST /CNT=14 /TID=Rn.11964.1 /TIER=Stack /STK=14 /UG=Rn.11964 /UG_TITLE=ESTs BI276946 podocalyxin-like 2 Podxl2 297433 NM_001106607 1372049_at BM385462 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385462 /DB_XREF=gi:18185515 /DB_XREF=UI-R-CN1-clv-n-20-0-UI.s1 /CLONE=UI-R-CN1-clv-n-20-0-UI /FEA=EST /CNT=14 /TID=Rn.9606.1 /TIER=Stack /STK=14 /UG=Rn.9606 /UG_TITLE=ESTs BM385462 rhomboid domain containing 3 Rhbdd3 289753 NM_001013875 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004252 // serine-type endopeptidase activity // inferred from electronic annotation 1372050_at BI279577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279577 /DB_XREF=gi:14927526 /DB_XREF=UI-R-DE0-cae-b-12-0-UI.s1 /CLONE=UI-R-DE0-cae-b-12-0-UI /FEA=EST /CNT=14 /TID=Rn.39168.1 /TIER=Stack /STK=14 /UG=Rn.39168 /UG_TITLE=ESTs BI279577 glycosyltransferase 25 domain containing 1 Glt25d1 290637 NM_001106067 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation 1372051_at BI294778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294778 /DB_XREF=gi:14957564 /DB_XREF=UI-R-DK0-cec-a-08-0-UI.s1 /CLONE=UI-R-DK0-cec-a-08-0-UI /FEA=EST /CNT=14 /TID=Rn.20670.2 /TIER=Stack /STK=14 /UG=Rn.20670 /UG_TITLE=Rattus norvegicus brain-enriched SH3-domain protein mRNA, complete cds BI294778 1372052_at BI275918 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275918 /DB_XREF=gi:14920324 /DB_XREF=UI-R-CX0-bxi-a-08-0-UI.s1 /CLONE=UI-R-CX0-bxi-a-08-0-UI /FEA=EST /CNT=14 /TID=Rn.6897.1 /TIER=Stack /STK=14 /UG=Rn.6897 /UG_TITLE=ESTs, Highly similar to budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae) (Mus musculus) (M.musculus) BI275918 budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae) Bub3 361662 NM_001047906 0000070 // mitotic sister chromatid segregation // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0008608 // attachment of spindle microtubules to kinetochore // inferred from electronic annotation /// 0051983 // regulation of chromosome segregation // inferred from electronic annotation /// 0071173 // spindle assembly checkpoint // inferred from electronic annotation 0000776 // kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1372053_at BG372577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372577 /DB_XREF=gi:13269114 /DB_XREF=UI-R-CV1-brv-g-08-0-UI.s1 /CLONE=UI-R-CV1-brv-g-08-0-UI /FEA=EST /CNT=14 /TID=Rn.26591.1 /TIER=Stack /STK=14 /UG=Rn.26591 /UG_TITLE=ESTs BG372577 1372054_at BG380399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380399 /DB_XREF=gi:13304871 /DB_XREF=UI-R-CT0-btw-g-04-0-UI.s1 /CLONE=UI-R-CT0-btw-g-04-0-UI /FEA=EST /CNT=14 /TID=Rn.33378.1 /TIER=Stack /STK=14 /UG=Rn.33378 /UG_TITLE=ESTs, Weakly similar to FEM1_CAEEL SEX-DETERMINING PROTEIN FEM-1 (C.elegans) BG380399 1372055_at AI060225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060225 /DB_XREF=gi:3334002 /DB_XREF=UI-R-C1-lm-f-03-0-UI.s1 /CLONE=UI-R-C1-lm-f-03-0-UI /FEA=EST /CNT=14 /TID=Rn.14163.1 /TIER=Stack /STK=14 /UG=Rn.14163 /UG_TITLE=ESTs AI060225 1372056_at AI406687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406687 /DB_XREF=gi:4250191 /DB_XREF=EST234974 /CLONE=ROVDV70 /FEA=EST /CNT=14 /TID=Rn.2418.1 /TIER=Stack /STK=14 /UG=Rn.2418 /UG_TITLE=ESTs AI406687 CKLF-like MARVEL transmembrane domain containing 6 Cmtm6 316035 NM_001007802 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1372057_at AA800232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800232 /DB_XREF=gi:2863187 /DB_XREF=EST189729 /CLONE=RHEAM72 /FEA=EST /CNT=14 /TID=Rn.6301.1 /TIER=Stack /STK=14 /UG=Rn.6301 /UG_TITLE=ESTs AA800232 nuclear receptor binding protein Nrbp 619579 NM_001034997 0006468 // protein phosphorylation // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1372058_at AI177914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177914 /DB_XREF=gi:3728552 /DB_XREF=EST221565 /CLONE=RPLCI45 /FEA=EST /CNT=14 /TID=Rn.15000.1 /TIER=Stack /STK=14 /UG=Rn.15000 /UG_TITLE=ESTs AI177914 1372059_at AA891759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891759 /DB_XREF=gi:3018638 /DB_XREF=EST195562 /CLONE=RKIAG44 /FEA=EST /CNT=14 /TID=Rn.3487.1 /TIER=Stack /STK=14 /UG=Rn.3487 /UG_TITLE=ESTs AA891759 similar to RIKEN cDNA 2610528E23 RGD1309437 288176 NM_001013866 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation 1372060_at AI010668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010668 /DB_XREF=gi:3224500 /DB_XREF=EST205119 /CLONE=RMUAP74 /FEA=EST /CNT=14 /TID=Rn.14054.1 /TIER=Stack /STK=14 /UG=Rn.14054 /UG_TITLE=ESTs AI010668 1372061_at BG381287 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381287 /DB_XREF=gi:13305759 /DB_XREF=UI-R-CT0-bui-d-09-0-UI.s1 /CLONE=UI-R-CT0-bui-d-09-0-UI /FEA=EST /CNT=14 /TID=Rn.39139.1 /TIER=Stack /STK=14 /UG=Rn.39139 /UG_TITLE=ESTs, Weakly similar to A56088 host cell factor C1 precursor (H.sapiens) BG381287 Rab9 effector protein with kelch motifs Rabepk 296649 NM_001024871 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1372062_at BF394161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394161 /DB_XREF=gi:11379025 /DB_XREF=UI-R-CA0-bha-g-01-0-UI.s1 /CLONE=UI-R-CA0-bha-g-01-0-UI /FEA=EST /CNT=14 /TID=Rn.1799.1 /TIER=Stack /STK=14 /UG=Rn.1799 /UG_TITLE=ESTs, Moderately similar to ERHUAH coatomer complex alpha chain homolog (H.sapiens) BF394161 cyclin-dependent kinase 2-interacting protein Cinp 299334 NM_001106758 0016301 // kinase activity // inferred from electronic annotation 1372063_at BG377807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377807 /DB_XREF=gi:13302279 /DB_XREF=UI-R-CU0-bvf-d-06-0-UI.s1 /CLONE=UI-R-CU0-bvf-d-06-0-UI /FEA=EST /CNT=14 /TID=Rn.29851.1 /TIER=Stack /STK=14 /UG=Rn.29851 /UG_TITLE=ESTs BG377807 1372064_at BI296385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296385 /DB_XREF=gi:14960757 /DB_XREF=UI-R-DK0-cez-g-05-0-UI.s1 /CLONE=UI-R-DK0-cez-g-05-0-UI /FEA=EST /CNT=24 /TID=Rn.7070.1 /TIER=Stack /STK=13 /UG=Rn.7070 /UG_TITLE=ESTs BI296385 chemokine (C-X-C motif) ligand 16 Cxcl16 497942 NM_001017478 0006935 // chemotaxis // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0030307 // positive regulation of cell growth // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0034097 // response to cytokine stimulus // not recorded /// 0034097 // response to cytokine stimulus // inferred from electronic annotation /// 0034341 // response to interferon-gamma // inferred from electronic annotation /// 0034341 // response to interferon-gamma // not recorded /// 0034612 // response to tumor necrosis factor // inferred from electronic annotation /// 0034612 // response to tumor necrosis factor // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005041 // low-density lipoprotein receptor activity // not recorded /// 0005044 // scavenger receptor activity // not recorded /// 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // not recorded 1372065_at AI104393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104393 /DB_XREF=gi:3708761 /DB_XREF=EST213682 /CLONE=RHECC71 /FEA=EST /CNT=23 /TID=Rn.4077.1 /TIER=Stack /STK=13 /UG=Rn.4077 /UG_TITLE=ESTs, Weakly similar to T-CELL ECTO-ADP-RIBOSYLTRANSFERASE 2 PRECURSOR (R.norvegicus) AI104393 ADP-ribosyltransferase 3 Art3 305235 NM_001012034 0006471 // protein ADP-ribosylation // inferred from electronic annotation 0003956 // NAD(P)+-protein-arginine ADP-ribosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1372066_at AI170703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170703 /DB_XREF=gi:3710743 /DB_XREF=EST216639 /CLONE=RMUBA20 /FEA=EST /CNT=25 /TID=Rn.4307.1 /TIER=Stack /STK=13 /UG=Rn.4307 /UG_TITLE=ESTs AI170703 family with sequence similarity 103, member A1 Fam103a1 293058 NM_001127451 1372067_at AI179567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179567 /DB_XREF=gi:3730205 /DB_XREF=EST223289 /CLONE=RSPCJ06 /FEA=EST /CNT=30 /TID=Rn.1822.1 /TIER=Stack /STK=13 /UG=Rn.1822 /UG_TITLE=ESTs AI179567 thioredoxin-related transmembrane protein 1 Tmx1 362751 NM_001024800 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded 0015036 // disulfide oxidoreductase activity // inferred from electronic annotation /// 0015036 // disulfide oxidoreductase activity // not recorded 1372068_at BI289543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289543 /DB_XREF=gi:14947222 /DB_XREF=UI-R-DK0-cff-c-09-0-UI.s1 /CLONE=UI-R-DK0-cff-c-09-0-UI /FEA=EST /CNT=29 /TID=Rn.1855.1 /TIER=Stack /STK=13 /UG=Rn.1855 /UG_TITLE=ESTs BI289543 zinc finger, MYND domain containing 11 Zmynd11 291259 NM_203366 /// NM_203367 /// NM_203368 /// NM_203369 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372069_at BF284716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284716 /DB_XREF=gi:11215786 /DB_XREF=EST449307 /CLONE=RGIEV31 /FEA=EST /CNT=25 /TID=Rn.2191.1 /TIER=Stack /STK=13 /UG=Rn.2191 /UG_TITLE=ESTs BF284716 KN motif and ankyrin repeat domains 1 Kank1 309429 NM_001037197 0030837 // negative regulation of actin filament polymerization // not recorded 1372070_at BM389261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389261 /DB_XREF=gi:18189314 /DB_XREF=UI-R-DZ0-cko-o-20-0-UI.s1 /CLONE=UI-R-DZ0-cko-o-20-0-UI /FEA=EST /CNT=24 /TID=Rn.3370.1 /TIER=Stack /STK=13 /UG=Rn.3370 /UG_TITLE=ESTs, Moderately similar to GILT_HUMAN GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE PRECURSOR (GAMMA-INTERFERON-INDUCIBLE PROTEIN IP-30) (H.sapiens) BM389261 interferon gamma inducible protein 30 Ifi30 290644 NM_001030026 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // not recorded /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // inferred from electronic annotation /// 0048147 // negative regulation of fibroblast proliferation // not recorded /// 0048147 // negative regulation of fibroblast proliferation // inferred from electronic annotation /// 0050821 // protein stabilization // not recorded /// 0050821 // protein stabilization // inferred from electronic annotation 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation 1372071_at AI102320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102320 /DB_XREF=gi:3707114 /DB_XREF=EST211609 /CLONE=RBRCC07 /FEA=EST /CNT=26 /TID=Rn.797.1 /TIER=Stack /STK=13 /UG=Rn.797 /UG_TITLE=ESTs, Weakly similar to LDVR RAT VERY LOW-DENSITY LIPOPROTEIN RECEPTOR PRECURSOR (R.norvegicus) AI102320 CD320 molecule /// CD320 antigen-like Cd320 /// LOC100365110 100365110 /// 362851 NM_001014201 /// XM_002727489 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008083 // growth factor activity // inferred from electronic annotation 1372072_at BI282268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282268 /DB_XREF=gi:14932867 /DB_XREF=UI-R-CU0s-cby-e-12-0-UI.s1 /CLONE=UI-R-CU0s-cby-e-12-0-UI /FEA=EST /CNT=26 /TID=Rn.4254.1 /TIER=Stack /STK=13 /UG=Rn.4254 /UG_TITLE=ESTs, Weakly similar to T25806 hypothetical protein K08B12.3 - Caenorhabditis elegans (C.elegans) BI282268 haloacid dehalogenase-like hydrolase domain containing 2 Hdhd2 361351 NM_001014151 0008152 // metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1372073_at AI008814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008814 /DB_XREF=gi:3222646 /DB_XREF=EST203265 /CLONE=REMBD65 /FEA=EST /CNT=23 /TID=Rn.8522.1 /TIER=Stack /STK=13 /UG=Rn.8522 /UG_TITLE=ESTs AI008814 GATA zinc finger domain containing 2A Gatad2a 290669 NM_001013881 0001568 // blood vessel development // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0001842 // neural fold formation // not recorded /// 0010172 // embryonic body morphogenesis // not recorded /// 0012501 // programmed cell death // not recorded /// 0021506 // anterior neuropore closure // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0016581 // NuRD complex // not recorded 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0030674 // protein binding, bridging // not recorded 1372074_at BI276000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276000 /DB_XREF=gi:14920481 /DB_XREF=UI-R-CX0-bxi-h-11-0-UI.s1 /CLONE=UI-R-CX0-bxi-h-11-0-UI /FEA=EST /CNT=22 /TID=Rn.7415.1 /TIER=Stack /STK=13 /UG=Rn.7415 /UG_TITLE=ESTs BI276000 nudix (nucleoside diphosphate linked moiety X)-type motif 3 Nudt3 294292 NM_001024243 0071544 // diphosphoinositol polyphosphate catabolic process // not recorded /// 0071544 // diphosphoinositol polyphosphate catabolic process // inferred from sequence or structural similarity /// 0071544 // diphosphoinositol polyphosphate catabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // not recorded /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // inferred from sequence or structural similarity /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372075_at AI177866 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177866 /DB_XREF=gi:3728504 /DB_XREF=EST221515 /CLONE=RPLCH60 /FEA=EST /CNT=22 /TID=Rn.3175.1 /TIER=Stack /STK=13 /UG=Rn.3175 /UG_TITLE=ESTs, Moderately similar to splicing factor, arginineserine-rich 6 (Homo sapiens) (H.sapiens) AI177866 splicing factor, arginine/serine-rich 6 Sfrs6 362264 NM_001014185 0008380 // RNA splicing // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372076_at BI294704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294704 /DB_XREF=gi:14957417 /DB_XREF=UI-R-DK0-ceb-b-03-0-UI.s1 /CLONE=UI-R-DK0-ceb-b-03-0-UI /FEA=EST /CNT=22 /TID=Rn.3763.1 /TIER=Stack /STK=13 /UG=Rn.3763 /UG_TITLE=ESTs, Highly similar to hepatitis B virus x-interacting protein; HBx-interacting protein; hepatitis B virus x-interacting protein (9.6kD) (Homo sapiens) (H.sapiens) BI294704 hepatitis B virus x interacting protein Hbxip 295357 NM_001106462 0006916 // anti-apoptosis // not recorded /// 0043154 // negative regulation of caspase activity // not recorded 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded 1372077_at AI009198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009198 /DB_XREF=gi:3223030 /DB_XREF=EST203649 /CLONE=REMBK79 /FEA=EST /CNT=36 /TID=Rn.8126.1 /TIER=Stack /STK=13 /UG=Rn.8126 /UG_TITLE=ESTs, Highly similar to UNRI_MOUSE UNR-INTERACTING PROTEIN (SERINE-THREONINE KINASE RECEPTOR-ASSOCIATED PROTEIN) (M.musculus) AI009198 serine/threonine kinase receptor associated protein Strap 297699 NM_001011969 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1372078_at AA891681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891681 /DB_XREF=gi:3018560 /DB_XREF=EST195484 /CLONE=RKIAF47 /FEA=EST /CNT=36 /TID=Rn.8126.1 /TIER=Stack /STK=9 /UG=Rn.8126 /UG_TITLE=ESTs, Highly similar to UNRI_MOUSE UNR-INTERACTING PROTEIN (SERINE-THREONINE KINASE RECEPTOR-ASSOCIATED PROTEIN) (M.musculus) AA891681 serine/threonine kinase receptor associated protein Strap 297699 NM_001011969 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1372079_at AI410099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410099 /DB_XREF=gi:4253603 /DB_XREF=EST238392 /CLONE=RKIEA25 /FEA=EST /CNT=22 /TID=Rn.6784.1 /TIER=Stack /STK=13 /UG=Rn.6784 /UG_TITLE=ESTs AI410099 1372080_at BI287936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287936 /DB_XREF=gi:14944027 /DB_XREF=UI-R-CX0s-ccw-a-07-0-UI.s1 /CLONE=UI-R-CX0s-ccw-a-07-0-UI /FEA=EST /CNT=21 /TID=Rn.22322.1 /TIER=Stack /STK=13 /UG=Rn.22322 /UG_TITLE=ESTs, Highly similar to 2016304A motor protein (H.sapiens) BI287936 inner membrane protein, mitochondrial Immt 312444 NM_001034928 0009409 // response to cold // inferred from expression pattern 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031305 // integral to mitochondrial inner membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1372081_at BI299305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299305 /DB_XREF=gi:14975585 /DB_XREF=UI-R-CV2-cht-f-02-0-UI.s1 /CLONE=UI-R-CV2-cht-f-02-0-UI /FEA=EST /CNT=21 /TID=Rn.18074.1 /TIER=Stack /STK=13 /UG=Rn.18074 /UG_TITLE=ESTs BI299305 1372082_at BM391772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391772 /DB_XREF=gi:18191825 /DB_XREF=UI-R-DO1-cmk-e-13-0-UI.s1 /CLONE=UI-R-DO1-cmk-e-13-0-UI /FEA=EST /CNT=20 /TID=Rn.7218.1 /TIER=Stack /STK=13 /UG=Rn.7218 /UG_TITLE=ESTs BM391772 NECAP endocytosis associated 2 Necap2 298598 NM_199096 0006810 // transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from sequence or structural similarity /// 0006897 // endocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005622 // intracellular // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0030125 // clathrin vesicle coat // not recorded /// 0030125 // clathrin vesicle coat // inferred from sequence or structural similarity /// 0030125 // clathrin vesicle coat // inferred from electronic annotation /// 0030665 // clathrin coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 1372083_at BI289658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289658 /DB_XREF=gi:14947446 /DB_XREF=UI-R-DK0-cfi-f-02-0-UI.s1 /CLONE=UI-R-DK0-cfi-f-02-0-UI /FEA=EST /CNT=20 /TID=Rn.1620.2 /TIER=Stack /STK=13 /UG=Rn.1620 /UG_TITLE=ESTs, Weakly similar to RNA polymerase I (127 kDa subunit) (Rattus norvegicus) (R.norvegicus) BI289658 polymerase (RNA) II (DNA directed) polypeptide B Polr2b 289561 NM_001106002 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005665 // DNA-directed RNA polymerase II, core complex // not recorded /// 0005665 // DNA-directed RNA polymerase II, core complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032549 // ribonucleoside binding // inferred from electronic annotation 1372084_at AI104546 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104546 /DB_XREF=gi:4134265 /DB_XREF=EST213835 /CLONE=RHECE91 /FEA=EST /CNT=20 /TID=Rn.1234.1 /TIER=Stack /STK=13 /UG=Rn.1234 /UG_TITLE=ESTs, Highly similar to protein tyrosine phosphatase 4a3 (Mus musculus) (M.musculus) AI104546 protein tyrosine phosphatase 4a3 Ptp4a3 362930 NM_001114405 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1372085_at AI237657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237657 /DB_XREF=gi:3831163 /DB_XREF=EST234219 /CLONE=RPLDB96 /FEA=EST /CNT=19 /TID=Rn.2818.1 /TIER=Stack /STK=13 /UG=Rn.2818 /UG_TITLE=ESTs AI237657 atlastin GTPase 2 Atl2 298757 NM_001100671 0006888 // ER to Golgi vesicle-mediated transport // not recorded /// 0007029 // endoplasmic reticulum organization // inferred from electronic annotation /// 0007029 // endoplasmic reticulum organization // not recorded /// 0007030 // Golgi organization // inferred from electronic annotation /// 0007030 // Golgi organization // not recorded /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1372086_at BM387251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387251 /DB_XREF=gi:18187304 /DB_XREF=UI-R-CN1-cjh-k-11-0-UI.s1 /CLONE=UI-R-CN1-cjh-k-11-0-UI /FEA=EST /CNT=19 /TID=Rn.4218.1 /TIER=Stack /STK=13 /UG=Rn.4218 /UG_TITLE=ESTs BM387251 FH2 domain containing 1 Fhdc1 295161 NM_001106437 0016043 // cellular component organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation 1372087_at BG666916 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666916 /DB_XREF=gi:13888838 /DB_XREF=DRACQE01 /CLONE=DRACQE01 /FEA=EST /CNT=20 /TID=Rn.8209.1 /TIER=Stack /STK=13 /UG=Rn.8209 /UG_TITLE=ESTs, Weakly similar to S49911 hypothetical protein YOR126c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BG666916 isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) Iah1 298917 NM_001100540 0006629 // lipid metabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation 1372088_at AI012434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012434 /DB_XREF=gi:3226266 /DB_XREF=EST206885 /CLONE=RPLAX22 /FEA=EST /CNT=20 /TID=Rn.7916.1 /TIER=Stack /STK=13 /UG=Rn.7916 /UG_TITLE=ESTs AI012434 PTPRF interacting protein, binding protein 1 (liprin beta 1) Ppfibp1 312855 NM_001107896 0005515 // protein binding // not recorded 1372089_at AI171222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171222 /DB_XREF=gi:3711262 /DB_XREF=EST217176 /CLONE=RMUBH75 /FEA=EST /CNT=20 /TID=Rn.8103.1 /TIER=Stack /STK=13 /UG=Rn.8103 /UG_TITLE=ESTs, Moderately similar to ML51_HUMAN MLN 51 PROTEIN (H.sapiens) AI171222 1372090_at AI231566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231566 /DB_XREF=gi:3815446 /DB_XREF=EST228254 /CLONE=REMDM14 /FEA=EST /CNT=19 /TID=Rn.4210.1 /TIER=Stack /STK=13 /UG=Rn.4210 /UG_TITLE=ESTs, Highly similar to MAX RAT MAX PROTEIN (R.norvegicus) AI231566 MYC associated factor X Max 60661 NM_022210 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 0006461 // protein complex assembly // inferred from direct assay /// 0009267 // cellular response to starvation // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010629 // negative regulation of gene expression // inferred from direct assay /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048678 // response to axon injury // inferred from expression pattern /// 0051402 // neuron apoptosis // inferred from expression pattern /// 0060041 // retina development in camera-type eye // inferred from expression pattern /// 0071375 // cellular response to peptide hormone stimulus // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016605 // PML body // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0071339 // MLL1 complex // not recorded /// 0071339 // MLL1 complex // inferred from sequence or structural similarity /// 0071339 // MLL1 complex // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1372091_at BI275959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275959 /DB_XREF=gi:14920398 /DB_XREF=UI-R-CX0-bxi-e-03-0-UI.s1 /CLONE=UI-R-CX0-bxi-e-03-0-UI /FEA=EST /CNT=19 /TID=Rn.8267.1 /TIER=Stack /STK=13 /UG=Rn.8267 /UG_TITLE=ESTs BI275959 MID1 interacting protein 1 (gastrulation specific G12 homolog (zebrafish)) Mid1ip1 404280 NM_206950 0007026 // negative regulation of microtubule depolymerization // not recorded /// 0007026 // negative regulation of microtubule depolymerization // inferred from sequence or structural similarity /// 0007026 // negative regulation of microtubule depolymerization // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded /// 0015630 // microtubule cytoskeleton // inferred from sequence or structural similarity /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded 1372092_at BI278968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278968 /DB_XREF=gi:14926331 /DB_XREF=UI-R-DB0-byt-c-11-0-UI.s1 /CLONE=UI-R-DB0-byt-c-11-0-UI /FEA=EST /CNT=19 /TID=Rn.17993.1 /TIER=Stack /STK=13 /UG=Rn.17993 /UG_TITLE=ESTs BI278968 trafficking protein, kinesin binding 2 Trak2 171086 NM_133560 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006493 // protein O-linked glycosylation // inferred from direct assay /// 0006605 // protein targeting // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0050811 // GABA receptor binding // inferred from direct assay /// 0050811 // GABA receptor binding // inferred from mutant phenotype 1372093_at AI409308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409308 /DB_XREF=gi:4252812 /DB_XREF=EST237600 /CLONE=RKIDM41 /FEA=EST /CNT=19 /TID=Rn.1297.1 /TIER=Stack /STK=13 /UG=Rn.1297 /UG_TITLE=ESTs, Moderately similar to MXI1 RAT MAX INTERACTING PROTEIN 1 (R.norvegicus) AI409308 Max interactor 1-like /// MAX interactor 1 LOC100360898 /// Mxi1 100360898 /// 25701 NM_013160 /// XM_002728898 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // traceable author statement /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1372094_at BG380556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380556 /DB_XREF=gi:13305028 /DB_XREF=UI-R-CT0-bty-f-12-0-UI.s1 /CLONE=UI-R-CT0-bty-f-12-0-UI /FEA=EST /CNT=19 /TID=Rn.16879.1 /TIER=Stack /STK=13 /UG=Rn.16879 /UG_TITLE=ESTs, Highly similar to T42204 chromatin structural protein homolog Supt5hp - mouse (M.musculus) BG380556 suppressor of Ty 5 homolog (S. cerevisiae) Supt5h 308472 NM_001107497 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006354 // RNA elongation // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0032968 // positive regulation of RNA elongation from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded 0003711 // transcription elongation regulator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008148 // negative transcription elongation factor activity // not recorded /// 0008159 // positive transcription elongation factor activity // not recorded /// 0019899 // enzyme binding // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1372095_at BF281867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281867 /DB_XREF=gi:11212937 /DB_XREF=EST446458 /CLONE=RGIBH43 /FEA=EST /CNT=18 /TID=Rn.13742.1 /TIER=Stack /STK=13 /UG=Rn.13742 /UG_TITLE=ESTs BF281867 1372096_at BI296062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296062 /DB_XREF=gi:14960129 /DB_XREF=UI-R-DK0-cfd-h-07-0-UI.s1 /CLONE=UI-R-DK0-cfd-h-07-0-UI /FEA=EST /CNT=18 /TID=Rn.17167.1 /TIER=Stack /STK=13 /UG=Rn.17167 /UG_TITLE=ESTs BI296062 oxidative-stress responsive 1 Oxsr1 316064 NM_001108194 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006979 // response to oxidative stress // not recorded /// 0007243 // intracellular protein kinase cascade // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0042802 // identical protein binding // not recorded 1372097_at BF284262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284262 /DB_XREF=gi:11215332 /DB_XREF=EST448853 /CLONE=RGIEN55 /FEA=EST /CNT=18 /TID=Rn.3765.1 /TIER=Stack /STK=13 /UG=Rn.3765 /UG_TITLE=ESTs, Highly similar to ICSB MOUSE INTERFERON CONSENSUS SEQUENCE BINDING PROTEIN (M.musculus) BF284262 1372098_at AI172092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172092 /DB_XREF=gi:3712132 /DB_XREF=EST218087 /CLONE=RMUBU82 /FEA=EST /CNT=18 /TID=Rn.7447.1 /TIER=Stack /STK=13 /UG=Rn.7447 /UG_TITLE=ESTs AI172092 transmembrane protein 141 Tmem141 499755 NM_001109197 1372099_at BI303661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303661 /DB_XREF=gi:14979941 /DB_XREF=UI-R-DQ0-cja-p-16-0-UI.s1 /CLONE=UI-R-DQ0-cja-p-16-0-UI /FEA=EST /CNT=18 /TID=Rn.4152.1 /TIER=Stack /STK=13 /UG=Rn.4152 /UG_TITLE=ESTs, Moderately similar to T12501 hypothetical protein DKFZp434O171.1 (H.sapiens) BI303661 family with sequence similarity 21, member C Fam21c 297530 NM_199207 0006810 // transport // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // not recorded /// 0042147 // retrograde transport, endosome to Golgi // inferred from sequence or structural similarity 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0071203 // WASH complex // not recorded /// 0071203 // WASH complex // inferred from sequence or structural similarity 0005515 // protein binding // not recorded 1372100_at BI283746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283746 /DB_XREF=gi:14935803 /DB_XREF=UI-R-CW0s-cch-c-09-0-UI.s1 /CLONE=UI-R-CW0s-cch-c-09-0-UI /FEA=EST /CNT=18 /TID=Rn.957.1 /TIER=Stack /STK=13 /UG=Rn.957 /UG_TITLE=ESTs, Moderately similar to SMP1_HUMAN SMALL MEMBRANE PROTEIN 1 (H.sapiens) BI283746 transmembrane protein 50A Tmem50a 298552 NM_001127525 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded 1372101_at AI177031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177031 /DB_XREF=gi:3727669 /DB_XREF=EST220638 /CLONE=ROVCA02 /FEA=EST /CNT=18 /TID=Rn.12038.1 /TIER=Stack /STK=13 /UG=Rn.12038 /UG_TITLE=ESTs AI177031 phosphatidic acid phosphatase type 2B Ppap2b 192270 NM_138905 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // not recorded /// 0001933 // negative regulation of protein phosphorylation // not recorded /// 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // not recorded /// 0016311 // dephosphorylation // not recorded /// 0030111 // regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030111 // regulation of Wnt receptor signaling pathway // not recorded /// 0034109 // homotypic cell-cell adhesion // not recorded /// 0050821 // protein stabilization // not recorded /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008195 // phosphatidate phosphatase activity // inferred from electronic annotation /// 0008195 // phosphatidate phosphatase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042392 // sphingosine-1-phosphate phosphatase activity // not recorded /// 0042577 // lipid phosphatase activity // inferred from electronic annotation /// 0042577 // lipid phosphatase activity // not recorded 1372102_at BF390024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390024 /DB_XREF=gi:11374866 /DB_XREF=UI-R-BS2-bdr-d-07-0-UI.s1 /CLONE=UI-R-BS2-bdr-d-07-0-UI /FEA=EST /CNT=35 /TID=Rn.22385.1 /TIER=Stack /STK=9 /UG=Rn.22385 /UG_TITLE=ESTs, Highly similar to NCR1_RAT NUCLEAR RECEPTOR CO-REPRESSOR 1 (N-COR1) (N-COR) (R.norvegicus) BF390024 nuclear receptor co-repressor 1 Ncor1 54299 XM_001077495 /// XM_577103 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0002361 // CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation // inferred from electronic annotation /// 0002361 // CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0014067 // negative regulation of phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014067 // negative regulation of phosphoinositide 3-kinase cascade // not recorded /// 0016481 // negative regulation of transcription // inferred from mutant phenotype /// 0016481 // negative regulation of transcription // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0021549 // cerebellum development // inferred from expression pattern /// 0021794 // thalamus development // inferred from electronic annotation /// 0021794 // thalamus development // not recorded /// 0031065 // positive regulation of histone deacetylation // inferred from electronic annotation /// 0031065 // positive regulation of histone deacetylation // not recorded /// 0032922 // circadian regulation of gene expression // inferred from electronic annotation /// 0032922 // circadian regulation of gene expression // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0051225 // spindle assembly // not recorded /// 0060318 // definitive erythrocyte differentiation // inferred from electronic annotation /// 0060318 // definitive erythrocyte differentiation // not recorded 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded /// 0017053 // transcriptional repressor complex // not recorded /// 0044428 // nuclear part // inferred from electronic annotation /// 0044428 // nuclear part // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0035033 // histone deacetylase regulator activity // inferred from electronic annotation /// 0035033 // histone deacetylase regulator activity // not recorded /// 0042826 // histone deacetylase binding // not recorded /// 0042974 // retinoic acid receptor binding // not recorded /// 0042974 // retinoic acid receptor binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // not recorded /// 0046966 // thyroid hormone receptor binding // inferred from electronic annotation /// 0046966 // thyroid hormone receptor binding // not recorded 1372103_at BM386931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386931 /DB_XREF=gi:18186984 /DB_XREF=UI-R-CN1-cjh-p-02-0-UI.s1 /CLONE=UI-R-CN1-cjh-p-02-0-UI /FEA=EST /CNT=32 /TID=Rn.27927.1 /TIER=Stack /STK=10 /UG=Rn.27927 /UG_TITLE=ESTs BM386931 DnaJ (Hsp40) homolog, subfamily A, member 4 Dnaja4 300721 NM_001025411 0006457 // protein folding // inferred from electronic annotation /// 0009408 // response to heat // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1372104_at BF289002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289002 /DB_XREF=gi:11220072 /DB_XREF=EST453593 /CLONE=RGIHA11 /FEA=EST /CNT=19 /TID=Rn.2555.1 /TIER=Stack /STK=13 /UG=Rn.2555 /UG_TITLE=ESTs BF289002 1372105_at BF284932 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284932 /DB_XREF=gi:11216002 /DB_XREF=EST449523 /CLONE=RGIEX85 /FEA=EST /CNT=19 /TID=Rn.6022.1 /TIER=Stack /STK=13 /UG=Rn.6022 /UG_TITLE=ESTs BF284932 EF-hand domain family, member A1 Efha1 171433 NM_134396 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005509 // calcium ion binding // inferred from electronic annotation 1372106_at BI284307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284307 /DB_XREF=gi:14936864 /DB_XREF=UI-R-CX0s-ccq-f-03-0-UI.s1 /CLONE=UI-R-CX0s-ccq-f-03-0-UI /FEA=EST /CNT=18 /TID=Rn.7379.1 /TIER=Stack /STK=13 /UG=Rn.7379 /UG_TITLE=ESTs BI284307 EH-domain containing 4 Ehd4 192204 NM_139324 0006907 // pinocytosis // inferred from mutant phenotype /// 0030100 // regulation of endocytosis // inferred from mutant phenotype 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded 0003924 // GTPase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1372107_at BG673187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG673187 /DB_XREF=gi:13895286 /DB_XREF=DRNBPC05 /CLONE=DRNBPC05 /FEA=EST /CNT=18 /TID=Rn.17164.1 /TIER=Stack /STK=13 /UG=Rn.17164 /UG_TITLE=ESTs BG673187 four and a half LIM domains 1 Fhl1 25177 NM_001033926 /// NM_145669 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372108_at BE098359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098359 /DB_XREF=gi:8490222 /DB_XREF=UI-R-BJ1-asy-g-04-0-UI.s1 /CLONE=UI-R-BJ1-asy-g-04-0-UI /FEA=EST /CNT=18 /TID=Rn.3598.1 /TIER=Stack /STK=13 /UG=Rn.3598 /UG_TITLE=ESTs BE098359 Pentatricopeptide repeat domain 3 Ptcd3 500199 NM_001134718 0005739 // mitochondrion // not recorded 0005515 // protein binding // not recorded 1372109_at AI102715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102715 /DB_XREF=gi:3707413 /DB_XREF=EST212004 /CLONE=REMBR61 /FEA=EST /CNT=18 /TID=Rn.7347.1 /TIER=Stack /STK=13 /UG=Rn.7347 /UG_TITLE=ESTs, Moderately similar to T12479 hypothetical protein DKFZp564N1362.1 (H.sapiens) AI102715 paroxysmal nonkinesiogenic dyskinesia Pnkd 100188944 NM_001134750 /// NM_001134751 /// NM_001134753 0004416 // hydroxyacylglutathione hydrolase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1372110_at BE113148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113148 /DB_XREF=gi:8505253 /DB_XREF=UI-R-BJ1-awc-b-01-0-UI.s1 /CLONE=UI-R-BJ1-awc-b-01-0-UI /FEA=EST /CNT=17 /TID=Rn.9179.1 /TIER=Stack /STK=13 /UG=Rn.9179 /UG_TITLE=ESTs BE113148 1372111_at BI285449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285449 /DB_XREF=gi:14939098 /DB_XREF=UI-R-DD0-caa-c-04-0-UI.s1 /CLONE=UI-R-DD0-caa-c-04-0-UI /FEA=EST /CNT=17 /TID=Rn.22518.1 /TIER=Stack /STK=13 /UG=Rn.22518 /UG_TITLE=ESTs BI285449 caveolin 1, caveolae protein Cav1 25404 NM_031556 /// NM_133651 0000165 // MAPKKK cascade // not recorded /// 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000188 // inactivation of MAPK activity // inferred from electronic annotation /// 0000188 // inactivation of MAPK activity // not recorded /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0001937 // negative regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0001937 // negative regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001960 // negative regulation of cytokine-mediated signaling pathway // inferred from electronic annotation /// 0001960 // negative regulation of cytokine-mediated signaling pathway // not recorded /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from mutant phenotype /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006940 // regulation of smooth muscle contraction // inferred from electronic annotation /// 0006940 // regulation of smooth muscle contraction // not recorded /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0007595 // lactation // inferred from electronic annotation /// 0007595 // lactation // not recorded /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009267 // cellular response to starvation // inferred from electronic annotation /// 0009267 // cellular response to starvation // not recorded /// 0009612 // response to mechanical stimulus // inferred from mutant phenotype /// 0009967 // positive regulation of signal transduction // inferred from mutant phenotype /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0009968 // negative regulation of signal transduction // not recorded /// 0010332 // response to gamma radiation // inferred from expression pattern /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from electronic annotation /// 0010524 // positive regulation of calcium ion transport into cytosol // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0010952 // positive regulation of peptidase activity // not recorded /// 0016050 // vesicle organization // inferred from electronic annotation /// 0016050 // vesicle organization // not recorded /// 0019217 // regulation of fatty acid metabolic process // inferred from electronic annotation /// 0019217 // regulation of fatty acid metabolic process // not recorded /// 0019915 // lipid storage // inferred from electronic annotation /// 0019915 // lipid storage // not recorded /// 0030193 // regulation of blood coagulation // inferred from electronic annotation /// 0030193 // regulation of blood coagulation // not recorded /// 0030301 // cholesterol transport // traceable author statement /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0030857 // negative regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030857 // negative regulation of epithelial cell differentiation // not recorded /// 0030879 // mammary gland development // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0031116 // positive regulation of microtubule polymerization // inferred from mutant phenotype /// 0031295 // T cell costimulation // not recorded /// 0031295 // T cell costimulation // inferred from sequence or structural similarity /// 0031295 // T cell costimulation // inferred from electronic annotation /// 0031623 // receptor internalization // not recorded /// 0032091 // negative regulation of protein binding // not recorded /// 0032507 // maintenance of protein location in cell // inferred from mutant phenotype /// 0032570 // response to progesterone stimulus // inferred from electronic annotation /// 0032570 // response to progesterone stimulus // not recorded /// 0033137 // negative regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033137 // negative regulation of peptidyl-serine phosphorylation // not recorded /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033138 // positive regulation of peptidyl-serine phosphorylation // not recorded /// 0033344 // cholesterol efflux // inferred from mutant phenotype /// 0033484 // nitric oxide homeostasis // inferred from electronic annotation /// 0033484 // nitric oxide homeostasis // not recorded /// 0042310 // vasoconstriction // not recorded /// 0042310 // vasoconstriction // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042524 // negative regulation of tyrosine phosphorylation of Stat5 protein // inferred from electronic annotation /// 0042524 // negative regulation of tyrosine phosphorylation of Stat5 protein // not recorded /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0043407 // negative regulation of MAP kinase activity // not recorded /// 0043407 // negative regulation of MAP kinase activity // inferred from electronic annotation /// 0043409 // negative regulation of MAPKKK cascade // inferred from electronic annotation /// 0043409 // negative regulation of MAPKKK cascade // not recorded /// 0043627 // response to estrogen stimulus // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // not recorded /// 0045019 // negative regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045019 // negative regulation of nitric oxide biosynthetic process // not recorded /// 0045056 // transcytosis // traceable author statement /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0045807 // positive regulation of endocytosis // inferred from mutant phenotype /// 0045907 // positive regulation of vasoconstriction // inferred from electronic annotation /// 0045907 // positive regulation of vasoconstriction // not recorded /// 0046426 // negative regulation of JAK-STAT cascade // inferred from electronic annotation /// 0046426 // negative regulation of JAK-STAT cascade // not recorded /// 0046785 // microtubule polymerization // inferred from mutant phenotype /// 0048554 // positive regulation of metalloenzyme activity // inferred from electronic annotation /// 0048554 // positive regulation of metalloenzyme activity // not recorded /// 0051259 // protein oligomerization // not recorded /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051480 // cytosolic calcium ion homeostasis // inferred from electronic annotation /// 0051480 // cytosolic calcium ion homeostasis // not recorded /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded /// 0051899 // membrane depolarization // inferred from electronic annotation /// 0051899 // membrane depolarization // not recorded /// 0052547 // regulation of peptidase activity // inferred from electronic annotation /// 0052547 // regulation of peptidase activity // not recorded /// 0055074 // calcium ion homeostasis // not recorded /// 0055074 // calcium ion homeostasis // inferred from electronic annotation /// 0060056 // mammary gland involution // inferred from electronic annotation /// 0060056 // mammary gland involution // not recorded /// 0070836 // caveola assembly // inferred from electronic annotation /// 0070836 // caveola assembly // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // inferred from sequence or structural similarity /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded 0000139 // Golgi membrane // not recorded /// 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0000299 // integral to membrane of membrane fraction // inferred from electronic annotation /// 0000299 // integral to membrane of membrane fraction // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay /// 0005811 // lipid particle // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005901 // caveola // inferred from direct assay /// 0005901 // caveola // not recorded /// 0005901 // caveola // inferred from sequence or structural similarity /// 0005901 // caveola // traceable author statement /// 0005901 // caveola // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0009925 // basal plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded /// 0045121 // membrane raft // inferred from direct assay /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0000149 // SNARE binding // inferred from mutant phenotype /// 0005102 // receptor binding // not recorded /// 0005198 // structural molecule activity // not recorded /// 0005198 // structural molecule activity // inferred from sequence or structural similarity /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016504 // peptidase activator activity // inferred from electronic annotation /// 0016504 // peptidase activator activity // not recorded /// 0019900 // kinase binding // inferred from physical interaction /// 0019905 // syntaxin binding // inferred from mutant phenotype /// 0050998 // nitric-oxide synthase binding // inferred from physical interaction /// 0050998 // nitric-oxide synthase binding // not recorded /// 0050998 // nitric-oxide synthase binding // inferred from electronic annotation 1372112_at AA945761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945761 /DB_XREF=gi:4132602 /DB_XREF=EST201260 /CLONE=RLUAS90 /FEA=EST /CNT=17 /TID=Rn.12117.1 /TIER=Stack /STK=13 /UG=Rn.12117 /UG_TITLE=ESTs AA945761 tripartite motif-containing 5 Trim5 308906 NM_001014023 0070206 // protein trimerization // inferred from electronic annotation /// 0070206 // protein trimerization // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1372113_at AA850662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850662 /DB_XREF=gi:2938202 /DB_XREF=EST193430 /CLONE=ROVAJ23 /FEA=EST /CNT=17 /TID=Rn.3721.1 /TIER=Stack /STK=13 /UG=Rn.3721 /LL=54265 /UG_GENE=Llglh /UG_TITLE=Lethal giant larvae (Drosophila) homolog 1 AA850662 flightless I homolog (Drosophila) Flii 287375 NM_001008279 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007275 // multicellular organismal development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372114_at BE099433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099433 /DB_XREF=gi:8491349 /DB_XREF=UI-R-BJ1-atw-g-09-0-UI.s1 /CLONE=UI-R-BJ1-atw-g-09-0-UI /FEA=EST /CNT=17 /TID=Rn.2044.1 /TIER=Stack /STK=13 /UG=Rn.2044 /UG_TITLE=ESTs BE099433 Similar to family 53, member C protein LOC685405 685405 XM_001062862 /// XM_002725325 1372115_at AI408477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408477 /DB_XREF=gi:4251981 /DB_XREF=EST236767 /CLONE=ROVEO74 /FEA=EST /CNT=17 /TID=Rn.1947.1 /TIER=Stack /STK=13 /UG=Rn.1947 /UG_TITLE=ESTs AI408477 similar to ubiquitin protein ligase E3 component n-recognin 2 LOC363188 363188 NM_001178071 /// XM_001061882 /// XM_002730019 0030163 // protein catabolic process // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1372116_at AI008955 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008955 /DB_XREF=gi:4132969 /DB_XREF=EST203406 /CLONE=REMBG04 /FEA=EST /CNT=17 /TID=Rn.7348.1 /TIER=Stack /STK=13 /UG=Rn.7348 /UG_TITLE=ESTs AI008955 mitochondrial ribosomal protein S2 Mrps2 362094 NM_001108576 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1372117_at BE329026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329026 /DB_XREF=gi:9202802 /DB_XREF=hq32g09.x1 /CLONE=IMAGE:3121120 /FEA=EST /CNT=17 /TID=Rn.3510.1 /TIER=Stack /STK=13 /UG=Rn.3510 /UG_TITLE=ESTs BE329026 myotubularin related protein 10 Mtmr10 309255 NM_001100846 /// XM_001058490 /// XM_219705 0016311 // dephosphorylation // inferred from electronic annotation 0016791 // phosphatase activity // inferred from electronic annotation 1372118_at BI281674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281674 /DB_XREF=gi:14931649 /DB_XREF=UI-R-CT0s-cav-b-08-0-UI.s1 /CLONE=UI-R-CT0s-cav-b-08-0-UI /FEA=EST /CNT=28 /TID=Rn.14657.1 /TIER=Stack /STK=13 /UG=Rn.14657 /UG_TITLE=ESTs BI281674 neuron specific gene family member 2 Nsg2 497878 NM_001034152 0007212 // dopamine receptor signaling pathway // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0050780 // dopamine receptor binding // inferred from electronic annotation 1372119_at BM389270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389270 /DB_XREF=gi:18189323 /DB_XREF=UI-R-DZ0-cko-b-22-0-UI.s1 /CLONE=UI-R-DZ0-cko-b-22-0-UI /FEA=EST /CNT=23 /TID=Rn.18210.1 /TIER=Stack /STK=13 /UG=Rn.18210 /UG_TITLE=ESTs, Weakly similar to T03F1.1.p (Caenorhabditis elegans) (C.elegans) BM389270 ubiquitin-like modifier activating enzyme 5 Uba5 300968 NM_001009669 0008152 // metabolic process // inferred from electronic annotation /// 0071569 // protein ufmylation // not recorded /// 0071569 // protein ufmylation // inferred from sequence or structural similarity /// 0071569 // protein ufmylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation /// 0071566 // UFM1 activating enzyme activity // not recorded /// 0071566 // UFM1 activating enzyme activity // inferred from sequence or structural similarity /// 0071566 // UFM1 activating enzyme activity // inferred from electronic annotation 1372120_at AI408025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408025 /DB_XREF=gi:4251529 /DB_XREF=EST236315 /CLONE=ROVDY26 /FEA=EST /CNT=23 /TID=Rn.18210.1 /TIER=Stack /STK=6 /UG=Rn.18210 /UG_TITLE=ESTs, Weakly similar to T03F1.1.p (Caenorhabditis elegans) (C.elegans) AI408025 ubiquitin-like modifier activating enzyme 5 Uba5 300968 NM_001009669 0008152 // metabolic process // inferred from electronic annotation /// 0071569 // protein ufmylation // not recorded /// 0071569 // protein ufmylation // inferred from sequence or structural similarity /// 0071569 // protein ufmylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation /// 0071566 // UFM1 activating enzyme activity // not recorded /// 0071566 // UFM1 activating enzyme activity // inferred from sequence or structural similarity /// 0071566 // UFM1 activating enzyme activity // inferred from electronic annotation 1372121_at BF284408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284408 /DB_XREF=gi:11215478 /DB_XREF=EST448999 /CLONE=RGIEP48 /FEA=EST /CNT=21 /TID=Rn.7273.1 /TIER=Stack /STK=13 /UG=Rn.7273 /UG_TITLE=ESTs BF284408 ubiquitin specific peptidase 9, X-linked Usp9x 363445 NM_001135893 /// NM_001135923 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0016579 // protein deubiquitination // not recorded /// 0030509 // BMP signaling pathway // not recorded 0005737 // cytoplasm // not recorded 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0070410 // co-SMAD binding // not recorded 1372122_at AI234654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234654 /DB_XREF=gi:3828160 /DB_XREF=EST231216 /CLONE=RLUDC95 /FEA=EST /CNT=20 /TID=Rn.7410.1 /TIER=Stack /STK=13 /UG=Rn.7410 /UG_TITLE=ESTs, Highly similar to tumor susceptibility gene 101 protein (Mus musculus) (M.musculus) AI234654 tumor susceptibility gene 101 Tsg101 292925 NM_181628 0001558 // regulation of cell growth // inferred from electronic annotation /// 0001558 // regulation of cell growth // not recorded /// 0006464 // protein modification process // inferred from electronic annotation /// 0006513 // protein monoubiquitination // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // not recorded /// 0040008 // regulation of growth // inferred from electronic annotation /// 0043162 // ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway // inferred from electronic annotation /// 0043162 // ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0046755 // non-lytic virus budding // not recorded /// 0046755 // non-lytic virus budding // inferred from sequence or structural similarity /// 0046755 // non-lytic virus budding // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005770 // late endosome // not recorded /// 0005770 // late endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from direct assay /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded 1372123_at AI172320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172320 /DB_XREF=gi:4134738 /DB_XREF=EST218321 /CLONE=RMUBX76 /FEA=EST /CNT=20 /TID=Rn.3902.1 /TIER=Stack /STK=13 /UG=Rn.3902 /UG_TITLE=ESTs, Highly similar to SUCCINATE DEHYDROGENASE (R.norvegicus) AI172320 succinate dehydrogenase complex, subunit B, iron sulfur (Ip) Sdhb 298596 NM_001100539 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006105 // succinate metabolic process // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005749 // mitochondrial respiratory chain complex II // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008177 // succinate dehydrogenase (ubiquinone) activity // inferred from mutant phenotype /// 0008177 // succinate dehydrogenase (ubiquinone) activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048039 // ubiquinone binding // inferred from sequence or structural similarity /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from sequence or structural similarity /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051538 // 3 iron, 4 sulfur cluster binding // inferred from sequence or structural similarity /// 0051538 // 3 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from sequence or structural similarity /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 1372124_at BI278814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278814 /DB_XREF=gi:14926029 /DB_XREF=UI-R-CX0-bwx-c-02-0-UI.s1 /CLONE=UI-R-CX0-bwx-c-02-0-UI /FEA=EST /CNT=19 /TID=Rn.8724.1 /TIER=Stack /STK=13 /UG=Rn.8724 /UG_TITLE=ESTs, Moderately similar to IF4B_HUMAN EUKARYOTIC TRANSLATION INITIATION FACTOR 4B (H.sapiens) BI278814 eukaryotic translation initiation factor 4B Eif4b 300253 NM_001008324 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation 1372125_at BF408445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408445 /DB_XREF=gi:11396420 /DB_XREF=UI-R-BJ2-brc-g-12-0-UI.s1 /CLONE=UI-R-BJ2-brc-g-12-0-UI /FEA=EST /CNT=19 /TID=Rn.4130.1 /TIER=Stack /STK=13 /UG=Rn.4130 /UG_TITLE=ESTs, Weakly similar to GSHH_RAT Phospholipid hydroperoxide glutathione peroxidase, mitochondrial precursor (PHGPx) (GPX-4) (R.norvegicus) BF408445 glutathione peroxidase 7 Gpx7 298376 NM_001106673 0006979 // response to oxidative stress // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0004601 // peroxidase activity // inferred from electronic annotation /// 0004602 // glutathione peroxidase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1372126_at BI288075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288075 /DB_XREF=gi:14944301 /DB_XREF=UI-R-CS0s-cbk-a-10-0-UI.s2 /CLONE=UI-R-CS0s-cbk-a-10-0-UI /FEA=EST /CNT=19 /TID=Rn.17074.1 /TIER=Stack /STK=13 /UG=Rn.17074 /UG_TITLE=ESTs BI288075 1372127_at BI275824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275824 /DB_XREF=gi:14920127 /DB_XREF=UI-R-CX0-bxh-a-05-0-UI.s1 /CLONE=UI-R-CX0-bxh-a-05-0-UI /FEA=EST /CNT=19 /TID=Rn.7333.1 /TIER=Stack /STK=13 /UG=Rn.7333 /UG_TITLE=ESTs BI275824 ubiquitin-associated protein 2 Ubap2 313169 NM_001107928 1372128_at BI294944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294944 /DB_XREF=gi:14957894 /DB_XREF=UI-R-DK0-ced-h-10-0-UI.s1 /CLONE=UI-R-DK0-ced-h-10-0-UI /FEA=EST /CNT=19 /TID=Rn.8526.1 /TIER=Stack /STK=13 /UG=Rn.8526 /UG_TITLE=ESTs, Weakly similar to ribosomal protein S23 (Rattus norvegicus) (R.norvegicus) BI294944 mitochondrial ribosomal protein S12 Mrps12 292758 NM_001106239 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372129_at BG378054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378054 /DB_XREF=gi:13302526 /DB_XREF=UI-R-CT0-bvn-c-10-0-UI.s1 /CLONE=UI-R-CT0-bvn-c-10-0-UI /FEA=EST /CNT=18 /TID=Rn.12494.1 /TIER=Stack /STK=13 /UG=Rn.12494 /UG_TITLE=ESTs BG378054 TBC1 domain family, member 9B Tbc1d9b 360520 NM_001108274 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1372130_at AI408249 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408249 /DB_XREF=gi:4251753 /DB_XREF=EST236539 /CLONE=ROVET50 /FEA=EST /CNT=18 /TID=Rn.6834.1 /TIER=Stack /STK=13 /UG=Rn.6834 /UG_TITLE=ESTs AI408249 1372131_at BF398140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398140 /DB_XREF=gi:11383126 /DB_XREF=UI-R-BS2-bem-h-02-0-UI.s1 /CLONE=UI-R-BS2-bem-h-02-0-UI /FEA=EST /CNT=18 /TID=Rn.23446.1 /TIER=Stack /STK=13 /UG=Rn.23446 /UG_TITLE=ESTs BF398140 ubiquilin 2 Ubqln2 317396 NM_001108251 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded 0005488 // binding // inferred from electronic annotation 1372132_at BI279729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279729 /DB_XREF=gi:14927822 /DB_XREF=UI-R-CU0s-cbq-a-07-0-UI.s1 /CLONE=UI-R-CU0s-cbq-a-07-0-UI /FEA=EST /CNT=17 /TID=Rn.3894.1 /TIER=Stack /STK=13 /UG=Rn.3894 /UG_TITLE=ESTs, Weakly similar to Yeast hypothetical 52.9 KD protein like (Caenorhabditis elegans) (C.elegans) BI279729 CNDP dipeptidase 2 (metallopeptidase M20 family) Cndp2 291394 NM_001010920 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0008152 // metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016805 // dipeptidase activity // inferred from electronic annotation /// 0016805 // dipeptidase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1372133_at AA955287 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955287 /DB_XREF=gi:4237649 /DB_XREF=UI-R-A1-ej-c-10-0-UI.s1 /CLONE=UI-R-A1-ej-c-10-0-UI /FEA=EST /CNT=17 /TID=Rn.3271.1 /TIER=Stack /STK=13 /UG=Rn.3271 /UG_TITLE=ESTs AA955287 related RAS viral (r-ras) oncogene homolog 2 Rras2 365355 NM_001013434 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded /// 0009987 // cellular process // inferred from electronic annotation /// 0009987 // cellular process // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1372134_at AW918650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918650 /DB_XREF=gi:8084432 /DB_XREF=EST349954 /CLONE=RGIEV92 /FEA=EST /CNT=17 /TID=Rn.6212.1 /TIER=Stack /STK=13 /UG=Rn.6212 /UG_TITLE=ESTs AW918650 coiled-coil-helix-coiled-coil-helix domain containing 6 Chchd6 297436 NM_001106608 1372135_at AI171452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171452 /DB_XREF=gi:3711492 /DB_XREF=EST217414 /CLONE=RMUBL13 /FEA=EST /CNT=16 /TID=Rn.2450.1 /TIER=Stack /STK=13 /UG=Rn.2450 /UG_TITLE=ESTs, Highly similar to T46362 probable tyrosine kinase DKFZp434O0516.1 (H.sapiens) AI171452 similar to twinfilin-like protein LOC684352 684352 NM_001135238 0005622 // intracellular // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1372136_at AA848776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848776 /DB_XREF=gi:4131670 /DB_XREF=EST191537 /CLONE=RLUAF82 /FEA=EST /CNT=16 /TID=Rn.37770.1 /TIER=Stack /STK=13 /UG=Rn.37770 /UG_TITLE=ESTs AA848776 Tetraspanin 14 Tspan14 306324 NM_001169127 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1372137_at BI279854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279854 /DB_XREF=gi:14928068 /DB_XREF=UI-R-CU0s-cbr-g-01-0-UI.s1 /CLONE=UI-R-CU0s-cbr-g-01-0-UI /FEA=EST /CNT=16 /TID=Rn.9623.1 /TIER=Stack /STK=13 /UG=Rn.9623 /UG_TITLE=ESTs, Highly similar to GC5L MOUSE GCN5-LIKE PROTEIN 1 (M.musculus) BI279854 biogenesis of lysosomal organelles complex-1, subunit 1 Bloc1s1 288785 NM_001105941 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0016044 // cellular membrane organization // not recorded 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded /// 0031083 // BLOC-1 complex // not recorded 0005515 // protein binding // not recorded 1372138_at BM390477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390477 /DB_XREF=gi:18190530 /DB_XREF=UI-R-CN1-cjq-j-10-0-UI.s1 /CLONE=UI-R-CN1-cjq-j-10-0-UI /FEA=EST /CNT=16 /TID=Rn.22284.1 /TIER=Stack /STK=13 /UG=Rn.22284 /UG_TITLE=ESTs BM390477 cut-like homeobox 1 Cux1 116639 XM_001070410 /// XM_347163 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000301 // retrograde transport, vesicle recycling within Golgi // inferred from mutant phenotype /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006891 // intra-Golgi vesicle-mediated transport // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0042491 // auditory receptor cell differentiation // inferred from electronic annotation /// 0042491 // auditory receptor cell differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0000139 // Golgi membrane // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0030173 // integral to Golgi membrane // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030674 // protein binding, bridging // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1372139_at BI289656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289656 /DB_XREF=gi:14947442 /DB_XREF=UI-R-DK0-cfi-e-12-0-UI.s1 /CLONE=UI-R-DK0-cfi-e-12-0-UI /FEA=EST /CNT=16 /TID=Rn.1118.1 /TIER=Stack /STK=13 /UG=Rn.1118 /UG_TITLE=ESTs BI289656 transmembrane protein 80 Tmem80 309109 NM_001017455 0016021 // integral to membrane // inferred from electronic annotation 1372140_at BI295141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295141 /DB_XREF=gi:14958289 /DB_XREF=UI-R-DK0-ceg-c-08-0-UI.s1 /CLONE=UI-R-DK0-ceg-c-08-0-UI /FEA=EST /CNT=16 /TID=Rn.11855.1 /TIER=Stack /STK=13 /UG=Rn.11855 /UG_TITLE=ESTs, Moderately similar to T08802 hypothetical protein DKFZp586D0623.1 (H.sapiens) BI295141 coiled-coil domain containing 28A Ccdc28a 361454 NM_001037789 1372141_at BI289500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289500 /DB_XREF=gi:14947135 /DB_XREF=UI-R-DK0-cfh-g-09-0-UI.s1 /CLONE=UI-R-DK0-cfh-g-09-0-UI /FEA=EST /CNT=16 /TID=Rn.3423.1 /TIER=Stack /STK=13 /UG=Rn.3423 /UG_TITLE=ESTs, Highly similar to PFD2_MOUSE PREFOLDIN SUBUNIT 2 (M.musculus) BI289500 prefoldin subunit 2 Pfdn2 685607 NM_001109476 0006457 // protein folding // inferred from electronic annotation /// 0006457 // protein folding // not recorded 0016272 // prefoldin complex // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1372142_at AI406558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406558 /DB_XREF=gi:4250062 /DB_XREF=EST234844 /CLONE=RKIDY90 /FEA=EST /CNT=16 /TID=Rn.7354.1 /TIER=Stack /STK=13 /UG=Rn.7354 /UG_TITLE=ESTs, Highly similar to arsA (bacterial) arsenite transporter, ATP-binding, homolog 1; arsenite-translocating ATPase (Mus musculus) (M.musculus) AI406558 arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) Asna1 288919 NM_001100505 0006875 // cellular metal ion homeostasis // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1372143_at AA849958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849958 /DB_XREF=gi:4131778 /DB_XREF=EST192725 /CLONE=RMUAL09 /FEA=EST /CNT=16 /TID=Rn.3933.1 /TIER=Stack /STK=13 /UG=Rn.3933 /UG_TITLE=ESTs AA849958 ubiquitin-conjugating enzyme E2 variant 2 Ube2v2 287927 NM_183052 0000729 // DNA double-strand break processing // inferred from electronic annotation /// 0000729 // DNA double-strand break processing // not recorded /// 0010976 // positive regulation of neuron projection development // inferred from mutant phenotype /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0043524 // negative regulation of neuron apoptosis // inferred from mutant phenotype /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0045739 // positive regulation of DNA repair // inferred from mutant phenotype /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051965 // positive regulation of synaptogenesis // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0031372 // UBC13-MMS2 complex // inferred from electronic annotation /// 0031372 // UBC13-MMS2 complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1372144_at BM386741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386741 /DB_XREF=gi:18186794 /DB_XREF=UI-R-CN1-cjg-j-08-0-UI.s1 /CLONE=UI-R-CN1-cjg-j-08-0-UI /FEA=EST /CNT=16 /TID=Rn.4189.1 /TIER=Stack /STK=13 /UG=Rn.4189 /UG_TITLE=ESTs BM386741 DnaJ (Hsp40) homolog, subfamily B, member 5 Dnajb5 313811 NM_001108004 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006457 // protein folding // inferred from electronic annotation /// 0006986 // response to unfolded protein // not recorded /// 0006986 // response to unfolded protein // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1372145_at BI289683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289683 /DB_XREF=gi:14947517 /DB_XREF=UI-R-DK0-cfi-h-07-0-UI.s1 /CLONE=UI-R-DK0-cfi-h-07-0-UI /FEA=EST /CNT=16 /TID=Rn.22757.1 /TIER=Stack /STK=13 /UG=Rn.22757 /UG_TITLE=ESTs, Moderately similar to SYTC_HUMAN THREONYL-TRNA SYNTHETASE, CYTOPLASMIC (H.sapiens) BI289683 threonyl-tRNA synthetase Tars 294810 NM_001006976 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006435 // threonyl-tRNA aminoacylation // inferred from electronic annotation /// 0043039 // tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004829 // threonine-tRNA ligase activity // inferred from electronic annotation /// 0004829 // threonine-tRNA ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016876 // ligase activity, forming aminoacyl-tRNA and related compounds // inferred from electronic annotation 1372146_at AA851264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851264 /DB_XREF=gi:2938804 /DB_XREF=EST194032 /CLONE=RPLAE55 /FEA=EST /CNT=24 /TID=Rn.3581.1 /TIER=Stack /STK=13 /UG=Rn.3581 /UG_TITLE=ESTs AA851264 1372147_at BM387802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387802 /DB_XREF=gi:18187855 /DB_XREF=UI-R-CN1-cjk-i-24-0-UI.s1 /CLONE=UI-R-CN1-cjk-i-24-0-UI /FEA=EST /CNT=21 /TID=Rn.6543.1 /TIER=Stack /STK=13 /UG=Rn.6543 /UG_TITLE=ESTs, Highly similar to NUYM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE 18 KD SUBUNIT PRECURSOR (H.sapiens) BM387802 NADH dehydrogenase (ubiquinone) Fe-S protein 4 Ndufs4 499529 NM_001025146 0001932 // regulation of protein phosphorylation // inferred from electronic annotation /// 0001932 // regulation of protein phosphorylation // not recorded /// 0006800 // oxygen and reactive oxygen species metabolic process // inferred from electronic annotation /// 0006800 // oxygen and reactive oxygen species metabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0008152 // metabolic process // not recorded /// 0019933 // cAMP-mediated signaling // inferred from electronic annotation /// 0019933 // cAMP-mediated signaling // not recorded /// 0022900 // electron transport chain // inferred from electronic annotation /// 0032981 // mitochondrial respiratory chain complex I assembly // inferred from electronic annotation /// 0032981 // mitochondrial respiratory chain complex I assembly // not recorded /// 0045333 // cellular respiration // inferred from electronic annotation /// 0045333 // cellular respiration // not recorded /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0051591 // response to cAMP // inferred from electronic annotation /// 0051591 // response to cAMP // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0045271 // respiratory chain complex I // inferred from direct assay /// 0070469 // respiratory chain // inferred from electronic annotation 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from mutant phenotype /// 0008137 // NADH dehydrogenase (ubiquinone) activity // not recorded /// 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from electronic annotation /// 0016651 // oxidoreductase activity, acting on NADH or NADPH // inferred from electronic annotation 1372148_at BI281210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281210 /DB_XREF=gi:14930714 /DB_XREF=UI-R-CT0s-cat-f-07-0-UI.s1 /CLONE=UI-R-CT0s-cat-f-07-0-UI /FEA=EST /CNT=18 /TID=Rn.4168.1 /TIER=Stack /STK=13 /UG=Rn.4168 /UG_TITLE=ESTs BI281210 COMM domain containing 2 Commd2 688478 NM_001109503 0005515 // protein binding // not recorded 1372149_at BM389502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389502 /DB_XREF=gi:18189555 /DB_XREF=UI-R-CN1-cjn-n-15-0-UI.s1 /CLONE=UI-R-CN1-cjn-n-15-0-UI /FEA=EST /CNT=17 /TID=Rn.50.1 /TIER=Stack /STK=13 /UG=Rn.50 /UG_TITLE=ESTs, Weakly similar to I37195 AU-specific RNA-binding protein enoyl-CoA hydratase homolog (H.sapiens) BM389502 AU RNA binding protein/enoyl-coenzyme A hydratase Auh 361215 NM_001108407 0006402 // mRNA catabolic process // not recorded /// 0008152 // metabolic process // not recorded 0005739 // mitochondrion // not recorded 0003723 // RNA binding // not recorded /// 0003730 // mRNA 3'-UTR binding // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004300 // enoyl-CoA hydratase activity // not recorded 1372150_at AI229488 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229488 /DB_XREF=gi:3813375 /DB_XREF=EST226183 /CLONE=REMCH08 /FEA=EST /CNT=17 /TID=Rn.2678.1 /TIER=Stack /STK=13 /UG=Rn.2678 /UG_TITLE=ESTs, Highly similar to UBPA MOUSE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 (M.musculus) AI229488 ubiquitin specific peptidase 10 Usp10 307905 NM_001034146 0006281 // DNA repair // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0016579 // protein deubiquitination // not recorded /// 0016579 // protein deubiquitination // inferred from sequence or structural similarity /// 0016579 // protein deubiquitination // inferred from electronic annotation /// 0030330 // DNA damage response, signal transduction by p53 class mediator // not recorded /// 0030330 // DNA damage response, signal transduction by p53 class mediator // inferred from sequence or structural similarity /// 0030330 // DNA damage response, signal transduction by p53 class mediator // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from sequence or structural similarity /// 0005769 // early endosome // inferred from electronic annotation 0002039 // p53 binding // not recorded /// 0002039 // p53 binding // inferred from sequence or structural similarity /// 0002039 // p53 binding // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0004221 // ubiquitin thiolesterase activity // inferred from sequence or structural similarity /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0004843 // ubiquitin-specific protease activity // inferred from sequence or structural similarity /// 0004843 // ubiquitin-specific protease activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042980 // cystic fibrosis transmembrane conductance regulator binding // not recorded /// 0042980 // cystic fibrosis transmembrane conductance regulator binding // inferred from sequence or structural similarity /// 0042980 // cystic fibrosis transmembrane conductance regulator binding // inferred from electronic annotation 1372151_at AI317851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI317851 /DB_XREF=gi:4033118 /DB_XREF=EST234522 /CLONE=RPPAA64 /FEA=EST /CNT=16 /TID=Rn.18770.1 /TIER=Stack /STK=13 /UG=Rn.18770 /UG_TITLE=ESTs AI317851 transcription elongation regulator 1 Tcerg1 307474 NM_001107390 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372152_at BI275874 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275874 /DB_XREF=gi:14920232 /DB_XREF=UI-R-CX0-bxh-e-11-0-UI.s1 /CLONE=UI-R-CX0-bxh-e-11-0-UI /FEA=EST /CNT=16 /TID=Rn.11659.1 /TIER=Stack /STK=13 /UG=Rn.11659 /UG_TITLE=ESTs BI275874 asparagine-linked glycosylation 14 homolog (S. cerevisiae) Alg14 362031 NM_001014176 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1372153_at BM385502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385502 /DB_XREF=gi:18185555 /DB_XREF=UI-R-DM1-cke-o-01-0-UI.s1 /CLONE=UI-R-DM1-cke-o-01-0-UI /FEA=EST /CNT=15 /TID=Rn.41812.1 /TIER=Stack /STK=13 /UG=Rn.41812 /UG_TITLE=ESTs, Weakly similar to KERATIN, TYPE I CYTOSKELETAL 21 (R.norvegicus) BM385502 keratin 15 Krt15 287700 NM_001004022 0045103 // intermediate filament-based process // traceable author statement 0005882 // intermediate filament // traceable author statement /// 0005882 // intermediate filament // inferred from electronic annotation /// 0045095 // keratin filament // traceable author statement 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372154_at AW521019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521019 /DB_XREF=gi:7163397 /DB_XREF=UI-R-BJ0p-agi-b-05-0-UI.s1 /CLONE=UI-R-BJ0p-agi-b-05-0-UI /FEA=EST /CNT=15 /TID=Rn.9525.1 /TIER=Stack /STK=13 /UG=Rn.9525 /UG_TITLE=ESTs AW521019 similar to 2010321M09Rik protein RGD1359616 300782 NM_001007663 1372155_at BI283697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283697 /DB_XREF=gi:14935698 /DB_XREF=UI-R-CW0s-ccg-f-09-0-UI.s1 /CLONE=UI-R-CW0s-ccg-f-09-0-UI /FEA=EST /CNT=15 /TID=Rn.6823.1 /TIER=Stack /STK=13 /UG=Rn.6823 /UG_TITLE=ESTs, Highly similar to TF1B MOUSE TRANSCRIPTION INTERMEDIARY FACTOR 1-BETA (M.musculus) BI283697 tripartite motif-containing 28 Trim28 116698 NM_053916 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0001837 // epithelial to mesenchymal transition // not recorded /// 0001837 // epithelial to mesenchymal transition // inferred from sequence or structural similarity /// 0006350 // transcription // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0046777 // protein autophosphorylation // not recorded 0000785 // chromatin // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005719 // nuclear euchromatin // not recorded /// 0005720 // nuclear heterochromatin // not recorded /// 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003713 // transcription coactivator activity // not recorded /// 0004672 // protein kinase activity // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // traceable author statement /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070087 // chromo shadow domain binding // not recorded 1372156_at BF414018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414018 /DB_XREF=gi:11402007 /DB_XREF=UI-R-BJ2-bol-d-12-0-UI.s1 /CLONE=UI-R-BJ2-bol-d-12-0-UI /FEA=EST /CNT=15 /TID=Rn.20057.1 /TIER=Stack /STK=13 /UG=Rn.20057 /UG_TITLE=ESTs BF414018 transmembrane protein 97 Tmem97 303330 NM_001008334 0042632 // cholesterol homeostasis // not recorded /// 0042632 // cholesterol homeostasis // inferred from sequence or structural similarity /// 0042632 // cholesterol homeostasis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from sequence or structural similarity /// 0005764 // lysosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // not recorded /// 0005791 // rough endoplasmic reticulum // inferred from sequence or structural similarity /// 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded /// 0031965 // nuclear membrane // inferred from sequence or structural similarity /// 0031965 // nuclear membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372157_at AI232807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232807 /DB_XREF=gi:3816687 /DB_XREF=EST229495 /CLONE=RKICG84 /FEA=EST /CNT=15 /TID=Rn.13864.1 /TIER=Stack /STK=13 /UG=Rn.13864 /UG_TITLE=ESTs, Moderately similar to CGI-143 protein (Homo sapiens) (H.sapiens) AI232807 bolA homolog 1 (E. coli) Bola1 365875 NM_001071776 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372158_at BI295768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295768 /DB_XREF=gi:14959546 /DB_XREF=UI-R-DK0-cfa-d-07-0-UI.s1 /CLONE=UI-R-DK0-cfa-d-07-0-UI /FEA=EST /CNT=15 /TID=Rn.2314.1 /TIER=Stack /STK=13 /UG=Rn.2314 /UG_TITLE=ESTs, Weakly similar to viral non-structural protein like (Caenorhabditis elegans) (C.elegans) BI295768 MACRO domain containing 1 Macrod1 246233 NM_139337 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1372159_at BI285456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285456 /DB_XREF=gi:14939112 /DB_XREF=UI-R-DD0-caa-d-02-0-UI.s1 /CLONE=UI-R-DD0-caa-d-02-0-UI /FEA=EST /CNT=15 /TID=Rn.6206.1 /TIER=Stack /STK=13 /UG=Rn.6206 /UG_TITLE=ESTs BI285456 1372160_at BM389738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389738 /DB_XREF=gi:18189791 /DB_XREF=UI-R-CN1-cjp-k-08-0-UI.s1 /CLONE=UI-R-CN1-cjp-k-08-0-UI /FEA=EST /CNT=15 /TID=Rn.20611.1 /TIER=Stack /STK=13 /UG=Rn.20611 /UG_TITLE=ESTs BM389738 bladder cancer associated protein homolog (human) Blcap 171113 NM_133582 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007049 // cell cycle // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1372161_at BE112719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112719 /DB_XREF=gi:8504824 /DB_XREF=UI-R-BJ1-avo-a-08-0-UI.s1 /CLONE=UI-R-BJ1-avo-a-08-0-UI /FEA=EST /CNT=15 /TID=Rn.3167.1 /TIER=Stack /STK=13 /UG=Rn.3167 /UG_TITLE=ESTs BE112719 similar to Emu2 LOC686428 686428 XM_001069996 1372162_at AI176565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176565 /DB_XREF=gi:3727203 /DB_XREF=EST220152 /CLONE=ROVBT89 /FEA=EST /CNT=15 /TID=Rn.3528.1 /TIER=Stack /STK=13 /UG=Rn.3528 /UG_TITLE=ESTs, Weakly similar to T19768 hypothetical protein C36A4.9 - Caenorhabditis elegans (C.elegans) AI176565 acyl-CoA synthetase short-chain family member 1 Acss1 296259 NM_001106524 0006085 // acetyl-CoA biosynthetic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0019413 // acetate biosynthetic process // inferred from direct assay /// 0019542 // propionate biosynthetic process // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0003987 // acetate-CoA ligase activity // inferred from direct assay /// 0003987 // acetate-CoA ligase activity // inferred from electronic annotation /// 0003987 // acetate-CoA ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016208 // AMP binding // inferred from electronic annotation 1372163_at BG670246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670246 /DB_XREF=gi:13892345 /DB_XREF=DRNACB11 /CLONE=DRNACB11 /FEA=EST /CNT=15 /TID=Rn.8715.1 /TIER=Stack /STK=13 /UG=Rn.8715 /UG_TITLE=ESTs BG670246 1372164_at AI600255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600255 /DB_XREF=gi:4609303 /DB_XREF=EST251958 /CLONE=REMEQ33 /FEA=EST /CNT=15 /TID=Rn.7803.1 /TIER=Stack /STK=13 /UG=Rn.7803 /UG_TITLE=ESTs AI600255 similar to hypothetical protein FLJ20154 RGD1305793 309456 NM_001127484 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1372165_at BF393140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393140 /DB_XREF=gi:11378000 /DB_XREF=UI-R-CA0-bfp-c-01-0-UI.s1 /CLONE=UI-R-CA0-bfp-c-01-0-UI /FEA=EST /CNT=15 /TID=Rn.62950.1 /TIER=Stack /STK=13 /UG=Rn.62950 /UG_TITLE=ESTs BF393140 1372166_at AI169146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169146 /DB_XREF=gi:3705454 /DB_XREF=EST214980 /CLONE=RKIBO11 /FEA=EST /CNT=15 /TID=Rn.17281.1 /TIER=Stack /STK=13 /UG=Rn.17281 /UG_TITLE=ESTs AI169146 D4, zinc and double PHD fingers family 2 Dpf2 361711 NM_001108516 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372167_at AW525656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525656 /DB_XREF=gi:7168041 /DB_XREF=UI-R-BJ0p-aiu-c-08-0-UI.s1 /CLONE=UI-R-BJ0p-aiu-c-08-0-UI /FEA=EST /CNT=15 /TID=Rn.8527.1 /TIER=Stack /STK=13 /UG=Rn.8527 /UG_TITLE=ESTs, Highly similar to RUXG_HUMAN SMALL NUCLEAR RIBONUCLEOPROTEIN G (H.sapiens) AW525656 small nuclear ribonucleoprotein polypeptide G Snrpg 681031 NM_001135085 0000387 // spliceosomal snRNP assembly // not recorded /// 0008380 // RNA splicing // not recorded 0005654 // nucleoplasm // not recorded /// 0005683 // U7 snRNP // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded 1372168_s_at BG673588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG673588 /DB_XREF=gi:13895687 /DB_XREF=DRN06G10 /CLONE=DRN06G10 /FEA=EST /CNT=15 /TID=Rn.6431.1 /TIER=Stack /STK=13 /UG=Rn.6431 /UG_TITLE=ESTs, Highly similar to IBP6 RAT INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN 6 PRECURSOR (R.norvegicus) BG673588 insulin-like growth factor binding protein 6 Igfbp6 25641 NM_013104 0001558 // regulation of cell growth // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation /// 0031994 // insulin-like growth factor I binding // inferred from physical interaction /// 0031995 // insulin-like growth factor II binding // inferred from physical interaction /// 0031995 // insulin-like growth factor II binding // traceable author statement 1372169_at BE108809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108809 /DB_XREF=gi:8500914 /DB_XREF=UI-R-BS1-ayy-f-08-0-UI.s1 /CLONE=UI-R-BS1-ayy-f-08-0-UI /FEA=EST /CNT=18 /TID=Rn.6209.1 /TIER=Stack /STK=13 /UG=Rn.6209 /UG_TITLE=ESTs BE108809 1372170_at AI411530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411530 /DB_XREF=gi:4255034 /DB_XREF=EST239824 /CLONE=RKIEK50 /FEA=EST /CNT=17 /TID=Rn.3679.1 /TIER=Stack /STK=13 /UG=Rn.3679 /UG_TITLE=ESTs, Moderately similar to A47488 aminoacylase (H.sapiens) AI411530 aminoacylase 1 Acy1 300981 NM_001005383 0006508 // proteolysis // inferred from electronic annotation /// 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0030163 // protein catabolic process // traceable author statement 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0004046 // aminoacylase activity // inferred from direct assay /// 0004046 // aminoacylase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372171_at BE111559 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111559 /DB_XREF=gi:8503664 /DB_XREF=UI-R-BJ1-avc-b-12-0-UI.s1 /CLONE=UI-R-BJ1-avc-b-12-0-UI /FEA=EST /CNT=17 /TID=Rn.22320.1 /TIER=Stack /STK=13 /UG=Rn.22320 /UG_TITLE=ESTs, Weakly similar to POLYHOMEOTIC-PROXIMAL CHROMATIN PROTEIN (D.melanogaster) BE111559 polyhomeotic-like 1 (Drosophila) Phc1 312690 NM_001107886 0001739 // sex chromatin // not recorded /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0016604 // nuclear body // not recorded 0003682 // chromatin binding // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1372172_at BM386289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386289 /DB_XREF=gi:18186342 /DB_XREF=UI-R-CN1-cjf-d-13-0-UI.s1 /CLONE=UI-R-CN1-cjf-d-13-0-UI /FEA=EST /CNT=16 /TID=Rn.23621.1 /TIER=Stack /STK=13 /UG=Rn.23621 /UG_TITLE=ESTs, Moderately similar to T08855 nephrocystin (H.sapiens) BM386289 nephronophthisis 1 (juvenile) homolog (human) Nphp1 296136 NM_001106506 0030030 // cell projection organization // not recorded /// 0048515 // spermatid differentiation // not recorded /// 0060041 // retina development in camera-type eye // not recorded 0031514 // motile secondary cilium // not recorded /// 0032391 // photoreceptor connecting cilium // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1372173_at AI407945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407945 /DB_XREF=gi:4251449 /DB_XREF=EST236235 /CLONE=RPLDJ52 /FEA=EST /CNT=16 /TID=Rn.15351.1 /TIER=Stack /STK=13 /UG=Rn.15351 /UG_TITLE=ESTs, Weakly similar to LIS1 MOUSE PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB ALPHA SUBUNIT (R.norvegicus) AI407945 small nuclear ribonucleoprotein 40 (U5) Snrnp40 313056 NM_001134556 0008380 // RNA splicing // not recorded 0005515 // protein binding // not recorded 1372174_at AI009656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009656 /DB_XREF=gi:3223488 /DB_XREF=EST204107 /CLONE=RLUBG85 /FEA=EST /CNT=16 /TID=Rn.8992.1 /TIER=Stack /STK=13 /UG=Rn.8992 /UG_TITLE=ESTs AI009656 penta-EF hand domain containing 1 Pef1 297900 NM_001007651 0051592 // response to calcium ion // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046982 // protein heterodimerization activity // not recorded /// 0046983 // protein dimerization activity // not recorded 1372175_at BE112899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112899 /DB_XREF=gi:8505004 /DB_XREF=UI-R-BJ1-awa-b-06-0-UI.s1 /CLONE=UI-R-BJ1-awa-b-06-0-UI /FEA=EST /CNT=15 /TID=Rn.1132.1 /TIER=Stack /STK=13 /UG=Rn.1132 /UG_TITLE=ESTs BE112899 1372176_at BF415343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415343 /DB_XREF=gi:11403332 /DB_XREF=UI-R-CA0-bpc-g-08-0-UI.s1 /CLONE=UI-R-CA0-bpc-g-08-0-UI /FEA=EST /CNT=15 /TID=Rn.51380.1 /TIER=Stack /STK=13 /UG=Rn.51380 /UG_TITLE=ESTs BF415343 protein kinase C, alpha Prkca 24680 NM_001105713 0000188 // inactivation of MAPK activity // inferred from electronic annotation /// 0000188 // inactivation of MAPK activity // not recorded /// 0000302 // response to reactive oxygen species // inferred from mutant phenotype /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // not recorded /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002026 // regulation of the force of heart contraction // not recorded /// 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006937 // regulation of muscle contraction // inferred from electronic annotation /// 0006937 // regulation of muscle contraction // not recorded /// 0007568 // aging // inferred from expression pattern /// 0007611 // learning or memory // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008629 // induction of apoptosis by intracellular signals // inferred from electronic annotation /// 0008629 // induction of apoptosis by intracellular signals // not recorded /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009636 // response to toxin // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0017148 // negative regulation of translation // inferred from mutant phenotype /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0018107 // peptidyl-threonine phosphorylation // inferred from direct assay /// 0021955 // central nervous system neuron axonogenesis // inferred from mutant phenotype /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // not recorded /// 0032355 // response to estradiol stimulus // inferred from mutant phenotype /// 0035408 // histone H3-T6 phosphorylation // not recorded /// 0035408 // histone H3-T6 phosphorylation // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045184 // establishment of protein localization // traceable author statement /// 0045471 // response to ethanol // inferred from mutant phenotype /// 0045822 // negative regulation of heart contraction // inferred from mutant phenotype /// 0045921 // positive regulation of exocytosis // inferred from mutant phenotype /// 0046325 // negative regulation of glucose import // inferred from electronic annotation /// 0046325 // negative regulation of glucose import // not recorded /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from electronic annotation /// 0046627 // negative regulation of insulin receptor signaling pathway // not recorded /// 0046677 // response to antibiotic // inferred from expression pattern /// 0048259 // regulation of receptor-mediated endocytosis // inferred from mutant phenotype /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0050729 // positive regulation of inflammatory response // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // not recorded /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050930 // induction of positive chemotaxis // inferred from electronic annotation /// 0050930 // induction of positive chemotaxis // not recorded /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0051965 // positive regulation of synaptogenesis // inferred from mutant phenotype /// 0070555 // response to interleukin-1 // inferred from electronic annotation /// 0070555 // response to interleukin-1 // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004697 // protein kinase C activity // inferred from direct assay /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0004697 // protein kinase C activity // not recorded /// 0004698 // calcium-dependent protein kinase C activity // inferred from direct assay /// 0004698 // calcium-dependent protein kinase C activity // not recorded /// 0004698 // calcium-dependent protein kinase C activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0035403 // histone kinase activity (H3-T6 specific) // inferred from electronic annotation /// 0035403 // histone kinase activity (H3-T6 specific) // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1372177_at AI180033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180033 /DB_XREF=gi:4135210 /DB_XREF=EST223766 /CLONE=RSPCP14 /FEA=EST /CNT=15 /TID=Rn.13568.1 /TIER=Stack /STK=13 /UG=Rn.13568 /UG_TITLE=ESTs, Weakly similar to T27A3.6.p (Caenorhabditis elegans) (C.elegans) AI180033 molybdenum cofactor synthesis 2 Mocs2 294753 NM_001007633 /// NM_001162413 0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from electronic annotation /// 0006777 // Mo-molybdopterin cofactor biosynthetic process // not recorded /// 0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from sequence or structural similarity /// 0006790 // sulfur compound metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0019008 // molybdopterin synthase complex // inferred from electronic annotation /// 0019008 // molybdopterin synthase complex // not recorded 0016740 // transferase activity // inferred from electronic annotation /// 0030366 // Mo-molybdopterin synthase activity // not recorded /// 0030366 // Mo-molybdopterin synthase activity // inferred from sequence or structural similarity /// 0030366 // Mo-molybdopterin synthase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1372178_at BM385981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385981 /DB_XREF=gi:18186034 /DB_XREF=UI-R-DN1-ckg-k-20-0-UI.s1 /CLONE=UI-R-DN1-ckg-k-20-0-UI /FEA=EST /CNT=15 /TID=Rn.13791.1 /TIER=Stack /STK=13 /UG=Rn.13791 /UG_TITLE=ESTs, Moderately similar to JC5975 aurora-related kinase 1 (M.musculus) BM385981 1372179_at BM389406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389406 /DB_XREF=gi:18189459 /DB_XREF=UI-R-CN1-cjk-k-17-0-UI.s1 /CLONE=UI-R-CN1-cjk-k-17-0-UI /FEA=EST /CNT=15 /TID=Rn.11449.1 /TIER=Stack /STK=13 /UG=Rn.11449 /UG_TITLE=ESTs BM389406 hippocalcin-like 1 Hpcal1 50871 NM_017356 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372180_at AI112985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112985 /DB_XREF=gi:3512934 /DB_XREF=UI-R-C0-gv-f-08-0-UI.s1 /CLONE=UI-R-C0-gv-f-08-0-UI /FEA=EST /CNT=15 /TID=Rn.11695.1 /TIER=Stack /STK=13 /UG=Rn.11695 /UG_TITLE=ESTs AI112985 syndecan 3 Sdc3 116673 NM_053893 0007155 // cell adhesion // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 1372181_at BM392229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392229 /DB_XREF=gi:18192282 /DB_XREF=UI-R-DO1-ckp-f-03-0-UI.s1 /CLONE=UI-R-DO1-ckp-f-03-0-UI /FEA=EST /CNT=14 /TID=Rn.14841.1 /TIER=Stack /STK=13 /UG=Rn.14841 /UG_TITLE=ESTs, Highly similar to RFA1_HUMAN REPLICATION PROTEIN A 70 KD DNA-BINDING SUBUNIT (H.sapiens) BM392229 1372182_at BM389769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389769 /DB_XREF=gi:18189822 /DB_XREF=UI-R-CN1-cjp-b-01-0-UI.s1 /CLONE=UI-R-CN1-cjp-b-01-0-UI /FEA=EST /CNT=14 /TID=Rn.2278.1 /TIER=Stack /STK=13 /UG=Rn.2278 /UG_TITLE=ESTs, Highly similar to A53047 6-phosphofructokinase (R.norvegicus) BM389769 phosphofructokinase, platelet Pfkp 60416 NM_206847 0006002 // fructose 6-phosphate metabolic process // inferred from direct assay /// 0006096 // glycolysis // inferred from direct assay /// 0006096 // glycolysis // inferred from electronic annotation /// 0030388 // fructose 1,6-bisphosphate metabolic process // inferred from direct assay /// 0051289 // protein homotetramerization // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005945 // 6-phosphofructokinase complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003872 // 6-phosphofructokinase activity // inferred from direct assay /// 0003872 // 6-phosphofructokinase activity // inferred from electronic annotation /// 0003872 // 6-phosphofructokinase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070095 // fructose-6-phosphate binding // inferred from direct assay 1372183_at AI230596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230596 /DB_XREF=gi:3814483 /DB_XREF=EST227291 /CLONE=REMCY75 /FEA=EST /CNT=14 /TID=Rn.6272.1 /TIER=Stack /STK=13 /UG=Rn.6272 /UG_TITLE=ESTs AI230596 Karyopherin alpha 1 Kpna1 288064 NM_198726 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation 1372184_at BM392213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392213 /DB_XREF=gi:18192266 /DB_XREF=UI-R-DO1-ckp-b-13-0-UI.s1 /CLONE=UI-R-DO1-ckp-b-13-0-UI /FEA=EST /CNT=14 /TID=Rn.4026.1 /TIER=Stack /STK=13 /UG=Rn.4026 /UG_TITLE=ESTs BM392213 similar to hypothetical protein BC011833 RGD1309188 315463 NM_001108129 1372185_at BF557934 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557934 /DB_XREF=gi:11667622 /DB_XREF=UI-R-C0-he-c-03-0-UI.r1 /CLONE=UI-R-C0-he-c-03-0-UI /FEA=EST /CNT=14 /TID=Rn.12306.1 /TIER=Stack /STK=13 /UG=Rn.12306 /UG_TITLE=ESTs, Highly similar to CLN3 MOUSE CLN3 PROTEIN (M.musculus) BF557934 methyltransferase like 11A Mettl11a 362103 NM_001025019 0007051 // spindle organization // inferred from sequence or structural similarity /// 0007059 // chromosome segregation // inferred from sequence or structural similarity /// 0018016 // N-terminal peptidyl-proline dimethylation // inferred from sequence or structural similarity /// 0035572 // N-terminal peptidyl-serine dimethylation // inferred from sequence or structural similarity /// 0035573 // N-terminal peptidyl-serine trimethylation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008276 // protein methyltransferase activity // inferred from sequence or structural similarity /// 0016740 // transferase activity // inferred from electronic annotation 1372186_a_at BM385445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385445 /DB_XREF=gi:18185504 /DB_XREF=UI-R-CN1-clv-l-22-0-UI.s1 /CLONE=UI-R-CN1-clv-l-22-0-UI /FEA=EST /CNT=14 /TID=Rn.55119.2 /TIER=Stack /STK=13 /UG=Rn.55119 /LL=29390 /UG_GENE=Top2a /UG_TITLE=topoisomerase (DNA) II alpha BM385445 topoisomerase (DNA) II alpha Top2a 360243 NM_022183 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006265 // DNA topological change // inferred from direct assay /// 0006265 // DNA topological change // inferred from electronic annotation /// 0006265 // DNA topological change // not recorded /// 0006266 // DNA ligation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007059 // chromosome segregation // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0021702 // cerebellar Purkinje cell differentiation // inferred from expression pattern /// 0021707 // cerebellar granule cell differentiation // inferred from expression pattern /// 0030261 // chromosome condensation // inferred from electronic annotation /// 0030261 // chromosome condensation // not recorded /// 0030263 // apoptotic chromosome condensation // not recorded /// 0040016 // embryonic cleavage // inferred from electronic annotation /// 0040016 // embryonic cleavage // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // not recorded /// 0045070 // positive regulation of viral genome replication // not recorded /// 0045870 // positive regulation of retroviral genome replication // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0071107 // response to parathyroid hormone stimulus // inferred from expression pattern 0000228 // nuclear chromosome // not recorded /// 0000793 // condensed chromosome // inferred from electronic annotation /// 0000793 // condensed chromosome // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005814 // centriole // not recorded /// 0009330 // DNA topoisomerase complex (ATP-hydrolyzing) // inferred from direct assay /// 0009330 // DNA topoisomerase complex (ATP-hydrolyzing) // not recorded /// 0043234 // protein complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // traceable author statement /// 0003682 // chromatin binding // inferred from direct assay /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003916 // DNA topoisomerase activity // inferred from direct assay /// 0003916 // DNA topoisomerase activity // inferred from electronic annotation /// 0003918 // DNA topoisomerase (ATP-hydrolyzing) activity // inferred from direct assay /// 0003918 // DNA topoisomerase (ATP-hydrolyzing) activity // inferred from electronic annotation /// 0003918 // DNA topoisomerase (ATP-hydrolyzing) activity // not recorded /// 0005080 // protein kinase C binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // traceable author statement /// 0008022 // protein C-terminus binding // not recorded /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0008144 // drug binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0042826 // histone deacetylase binding // not recorded /// 0043130 // ubiquitin binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043566 // structure-specific DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // not recorded 1372187_at AA945751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945751 /DB_XREF=gi:3105667 /DB_XREF=EST201250 /CLONE=RLUAS78 /FEA=EST /CNT=14 /TID=Rn.3990.1 /TIER=Stack /STK=13 /UG=Rn.3990 /UG_TITLE=ESTs AA945751 protein kinase D3 Prkd3 313834 NM_001024263 0006468 // protein phosphorylation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372188_at BM392171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392171 /DB_XREF=gi:18192224 /DB_XREF=UI-R-DO1-ckp-i-14-0-UI.s1 /CLONE=UI-R-DO1-ckp-i-14-0-UI /FEA=EST /CNT=14 /TID=Rn.4227.1 /TIER=Stack /STK=13 /UG=Rn.4227 /UG_TITLE=ESTs, Moderately similar to SCO2_HUMAN SCO2 PROTEIN HOMOLOG PRECURSOR (H.sapiens) BM392171 Non-SMC condensin II complex, subunit H2 Ncaph2 300149 NM_001024877 0030261 // chromosome condensation // inferred from electronic annotation /// 0033077 // T cell differentiation in thymus // not recorded 0005634 // nucleus // inferred from electronic annotation 1372189_at AI411144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411144 /DB_XREF=gi:4254648 /DB_XREF=EST239438 /CLONE=RKIER90 /FEA=EST /CNT=14 /TID=Rn.36397.1 /TIER=Stack /STK=13 /UG=Rn.36397 /UG_TITLE=ESTs, Moderately similar to T00361 hypothetical protein KIAA0678 (H.sapiens) AI411144 0005488 // binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation 1372190_at AI235942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235942 /DB_XREF=gi:3829448 /DB_XREF=EST232504 /CLONE=ROVCY91 /FEA=EST /CNT=14 /TID=Rn.36859.1 /TIER=Stack /STK=13 /UG=Rn.36859 /UG_TITLE=ESTs AI235942 aquaporin 4 Aqp4 25293 NM_001142366 /// NM_012825 0006810 // transport // inferred from electronic annotation /// 0006833 // water transport // inferred from direct assay /// 0006833 // water transport // not recorded /// 0006833 // water transport // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0015670 // carbon dioxide transport // inferred from direct assay /// 0030104 // water homeostasis // not recorded /// 0030104 // water homeostasis // inferred from electronic annotation /// 0042538 // hyperosmotic salinity response // inferred from expression pattern /// 0050891 // multicellular organismal water homeostasis // not recorded /// 0050891 // multicellular organismal water homeostasis // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055085 // transmembrane transport // not recorded /// 0070295 // renal water absorption // not recorded /// 0070295 // renal water absorption // inferred from electronic annotation /// 0071346 // cellular response to interferon-gamma // not recorded /// 0071346 // cellular response to interferon-gamma // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0005911 // cell-cell junction // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0015250 // water channel activity // inferred from direct assay /// 0015250 // water channel activity // not recorded /// 0015250 // water channel activity // inferred from electronic annotation /// 0015288 // porin activity // inferred from direct assay 1372191_at BI303656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303656 /DB_XREF=gi:14979936 /DB_XREF=UI-R-DQ0-cja-p-04-0-UI.s1 /CLONE=UI-R-DQ0-cja-p-04-0-UI /FEA=EST /CNT=14 /TID=Rn.18421.1 /TIER=Stack /STK=13 /UG=Rn.18421 /UG_TITLE=ESTs BI303656 1372192_at AI145385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145385 /DB_XREF=gi:3667184 /DB_XREF=UI-R-BT0-qe-d-08-0-UI.s1 /CLONE=UI-R-BT0-qe-d-08-0-UI /FEA=EST /CNT=14 /TID=Rn.3580.1 /TIER=Stack /STK=13 /UG=Rn.3580 /UG_TITLE=ESTs AI145385 1372193_at AI408713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408713 /DB_XREF=gi:4252217 /DB_XREF=EST237004 /CLONE=ROVEG22 /FEA=EST /CNT=14 /TID=Rn.13866.1 /TIER=Stack /STK=13 /UG=Rn.13866 /UG_TITLE=ESTs AI408713 imprinted and ancient Impact 497198 NM_001012235 0006417 // regulation of translation // inferred from electronic annotation 1372194_at AI172035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172035 /DB_XREF=gi:3712075 /DB_XREF=EST218030 /CLONE=RMUBU15 /FEA=EST /CNT=14 /TID=Rn.22334.1 /TIER=Stack /STK=13 /UG=Rn.22334 /UG_TITLE=ESTs AI172035 A kinase (PRKA) anchor protein 10 Akap10 360540 NM_001114606 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0004871 // signal transducer activity // inferred from electronic annotation 1372195_at BG663128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663128 /DB_XREF=gi:13885050 /DB_XREF=DRA08F03 /CLONE=DRA08F03 /FEA=EST /CNT=14 /TID=Rn.43529.1 /TIER=Stack /STK=13 /UG=Rn.43529 /UG_TITLE=ESTs, Weakly similar to CALM_HUMAN CALMODULIN (R.norvegicus) BG663128 troponin C type 2 (fast) Tnnc2 296369 NM_001037351 0003009 // skeletal muscle contraction // inferred from electronic annotation /// 0003009 // skeletal muscle contraction // not recorded 0005861 // troponin complex // inferred from electronic annotation /// 0005861 // troponin complex // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation 1372196_at BI284203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284203 /DB_XREF=gi:14936671 /DB_XREF=UI-R-CX0s-ccn-d-10-0-UI.s1 /CLONE=UI-R-CX0s-ccn-d-10-0-UI /FEA=EST /CNT=14 /TID=Rn.19009.1 /TIER=Stack /STK=13 /UG=Rn.19009 /UG_TITLE=ESTs BI284203 nuclear receptor co-repressor 2 Ncor2 360801 NM_001108334 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0021537 // telencephalon development // not recorded /// 0021846 // cell proliferation in forebrain // not recorded /// 0030900 // forebrain development // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0042593 // glucose homeostasis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0050872 // white fat cell differentiation // not recorded /// 0060206 // estrous cycle phase // inferred from expression pattern 0000118 // histone deacetylase complex // not recorded /// 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0016604 // nuclear body // not recorded /// 0017053 // transcriptional repressor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005112 // Notch binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0042826 // histone deacetylase binding // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0047485 // protein N-terminus binding // not recorded 1372197_at BI299775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299775 /DB_XREF=gi:14976055 /DB_XREF=UI-R-CV2-chx-b-02-0-UI.s1 /CLONE=UI-R-CV2-chx-b-02-0-UI /FEA=EST /CNT=14 /TID=Rn.12956.1 /TIER=Stack /STK=13 /UG=Rn.12956 /UG_TITLE=ESTs BI299775 1372198_at BG376471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376471 /DB_XREF=gi:13300943 /DB_XREF=UI-R-CU0-but-h-07-0-UI.s1 /CLONE=UI-R-CU0-but-h-07-0-UI /FEA=EST /CNT=14 /TID=Rn.8409.1 /TIER=Stack /STK=13 /UG=Rn.8409 /UG_TITLE=ESTs BG376471 methylphosphate capping enzyme Mepce 304361 NM_001100678 0006479 // protein methylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008276 // protein methyltransferase activity // inferred from electronic annotation 1372199_at AI233191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233191 /DB_XREF=gi:3817071 /DB_XREF=EST229879 /CLONE=RKIDC02 /FEA=EST /CNT=14 /TID=Rn.7298.1 /TIER=Stack /STK=13 /UG=Rn.7298 /UG_TITLE=ESTs, Weakly similar to YQO9_CAEEL Hypothetical 141.2 kDa protein EEED8.9 in chromosome II (C.elegans) AI233191 1372200_at BI273727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI273727 /DB_XREF=gi:14883968 /DB_XREF=UI-R-CW0-bvy-d-02-0-UI.s1 /CLONE=UI-R-CW0-bvy-d-02-0-UI /FEA=EST /CNT=14 /TID=Rn.7475.1 /TIER=Stack /STK=13 /UG=Rn.7475 /UG_TITLE=ESTs BI273727 G-protein signaling modulator 3 (AGS3-like, C. elegans) Gpsm3 406163 NM_001003974 0006955 // immune response // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372201_at AI233698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233698 /DB_XREF=gi:3817578 /DB_XREF=EST230386 /CLONE=RKIDJ06 /FEA=EST /CNT=14 /TID=Rn.11452.1 /TIER=Stack /STK=13 /UG=Rn.11452 /UG_TITLE=ESTs AI233698 gametogenetin binding protein 2 Ggnbp2 360584 NM_001004273 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // not recorded 1372202_at BF284058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284058 /DB_XREF=gi:11215128 /DB_XREF=EST448649 /CLONE=RGIEK45 /FEA=EST /CNT=14 /TID=Rn.12996.1 /TIER=Stack /STK=13 /UG=Rn.12996 /UG_TITLE=ESTs BF284058 similar to expressed sequence AI597479 RGD1310553 301374 NM_001008517 1372203_at AI101286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101286 /DB_XREF=gi:3704623 /DB_XREF=EST210575 /CLONE=RBRBK79 /FEA=EST /CNT=14 /TID=Rn.7581.1 /TIER=Stack /STK=13 /UG=Rn.7581 /UG_TITLE=ESTs AI101286 sorting nexin family member 27 Snx27 260323 NM_001110151 /// NM_152847 0006810 // transport // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007399 // nervous system development // non-traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1372204_at BM391843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391843 /DB_XREF=gi:18191896 /DB_XREF=UI-R-DO1-cmk-f-24-0-UI.s1 /CLONE=UI-R-DO1-cmk-f-24-0-UI /FEA=EST /CNT=14 /TID=Rn.20118.1 /TIER=Stack /STK=13 /UG=Rn.20118 /UG_TITLE=ESTs BM391843 ELK4, member of ETS oncogene family Elk4 304786 NM_001107173 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1372205_at AI713121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI713121 /DB_XREF=gi:5016921 /DB_XREF=UI-R-Y0-aba-e-05-0-UI.s1 /CLONE=UI-R-Y0-aba-e-05-0-UI /FEA=EST /CNT=14 /TID=Rn.23603.1 /TIER=Stack /STK=13 /UG=Rn.23603 /UG_TITLE=ESTs AI713121 zinc finger protein 278 Zfp278 305471 NM_001107231 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372206_at AI412469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412469 /DB_XREF=gi:4255973 /DB_XREF=EST240768 /CLONE=RBRDO88 /FEA=EST /CNT=14 /TID=Rn.37250.1 /TIER=Stack /STK=13 /UG=Rn.37250 /UG_TITLE=ESTs, Moderately similar to T50621 hypothetical protein DKFZp762O076.1 (H.sapiens) AI412469 transmembrane protein 55B Tmem55b 364298 NM_001014233 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation 1372207_at AI549477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549477 /DB_XREF=gi:4466965 /DB_XREF=UI-R-C3-tu-c-09-0-UI.s1 /CLONE=UI-R-C3-tu-c-09-0-UI /FEA=EST /CNT=14 /TID=Rn.8076.1 /TIER=Stack /STK=13 /UG=Rn.8076 /UG_TITLE=ESTs, Moderately similar to S68142 probable transcription factor SMAP (H.sapiens) AI549477 bromodomain containing 8 Brd8 291691 NM_001008509 0043967 // histone H4 acetylation // inferred from electronic annotation /// 0043967 // histone H4 acetylation // not recorded /// 0043968 // histone H2A acetylation // inferred from electronic annotation /// 0043968 // histone H2A acetylation // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0035267 // NuA4 histone acetyltransferase complex // inferred from electronic annotation /// 0035267 // NuA4 histone acetyltransferase complex // not recorded 0004872 // receptor activity // inferred from electronic annotation 1372208_at AA942959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA942959 /DB_XREF=gi:3102875 /DB_XREF=EST198458 /CLONE=RBRAC58 /FEA=EST /CNT=14 /TID=Rn.36206.1 /TIER=Stack /STK=13 /UG=Rn.36206 /UG_TITLE=ESTs AA942959 protein phosphatase 1, regulatory (inhibitor) subunit 1B Ppp1r1b 360616 NM_138521 0006350 // transcription // inferred from electronic annotation /// 0006350 // transcription // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007621 // negative regulation of female receptivity // inferred from electronic annotation /// 0007621 // negative regulation of female receptivity // not recorded /// 0023034 // intracellular signaling pathway // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0004864 // phosphoprotein phosphatase inhibitor activity // traceable author statement /// 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction 1372209_at AI105072 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105072 /DB_XREF=gi:3709251 /DB_XREF=EST214361 /CLONE=RHECN29 /FEA=EST /CNT=21 /TID=Rn.2243.1 /TIER=Stack /STK=13 /UG=Rn.2243 /UG_TITLE=ESTs, Highly similar to S71820 JUN-activation-domain-binding protein 1 (H.sapiens) AI105072 COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis) Cops5 312916 NM_001025695 0000338 // protein deneddylation // inferred from electronic annotation /// 0000338 // protein deneddylation // not recorded /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0008180 // signalosome // inferred from electronic annotation /// 0008180 // signalosome // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // not recorded 1372210_at BM388609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388609 /DB_XREF=gi:18188662 /DB_XREF=UI-R-DZ0-ckm-d-13-0-UI.s1 /CLONE=UI-R-DZ0-ckm-d-13-0-UI /FEA=EST /CNT=15 /TID=Rn.16636.1 /TIER=Stack /STK=13 /UG=Rn.16636 /UG_TITLE=ESTs, Moderately similar to ORF3,splicevariant a (H.sapiens) BM388609 motile sperm domain containing 3 Mospd3 288557 NM_001025629 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372211_at BI284461 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284461 /DB_XREF=gi:14937161 /DB_XREF=UI-R-CX0s-ccr-d-01-0-UI.s1 /CLONE=UI-R-CX0s-ccr-d-01-0-UI /FEA=EST /CNT=15 /TID=Rn.3818.1 /TIER=Stack /STK=13 /UG=Rn.3818 /UG_TITLE=ESTs BI284461 v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian) Mafk 246760 NM_145673 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007399 // nervous system development // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1372212_at BI285445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285445 /DB_XREF=gi:14939090 /DB_XREF=UI-R-DD0-caa-b-10-0-UI.s1 /CLONE=UI-R-DD0-caa-b-10-0-UI /FEA=EST /CNT=15 /TID=Rn.20253.1 /TIER=Stack /STK=13 /UG=Rn.20253 /UG_TITLE=ESTs, Weakly similar to T47142 hypothetical protein DKFZp761P0724.1 (H.sapiens) BI285445 putative GTP-binding protein LOC293589 293589 NM_001106311 0006598 // polyamine catabolic process // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0046592 // polyamine oxidase activity // not recorded 1372213_at BM390487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390487 /DB_XREF=gi:18190540 /DB_XREF=UI-R-CN1-cjq-l-08-0-UI.s1 /CLONE=UI-R-CN1-cjq-l-08-0-UI /FEA=EST /CNT=15 /TID=Rn.22047.1 /TIER=Stack /STK=13 /UG=Rn.22047 /UG_TITLE=ESTs, Moderately similar to T46271 hypothetical protein DKFZp564P1263.1 (H.sapiens) BM390487 similar to hypothetical protein MGC6835 LOC500300 500300 NM_001024334 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1372214_at AI104277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104277 /DB_XREF=gi:3704951 /DB_XREF=EST213566 /CLONE=RHEBZ69 /FEA=EST /CNT=15 /TID=Rn.2350.1 /TIER=Stack /STK=13 /UG=Rn.2350 /UG_TITLE=ESTs, Moderately similar to AF151897 1 CGI-139 protein (H.sapiens) AI104277 mitochondrial ribosomal protein S33 Mrps33 296995 NM_001047863 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 1372215_at AA859788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859788 /DB_XREF=gi:4230329 /DB_XREF=UI-R-E0-bu-f-11-0-UI.s1 /CLONE=UI-R-E0-bu-f-11-0-UI /FEA=EST /CNT=14 /TID=Rn.759.1 /TIER=Stack /STK=13 /UG=Rn.759 /UG_TITLE=ESTs, Weakly similar to mitochondrial ribosomal protein S11 like (Caenorhabditis elegans) (C.elegans) AA859788 mitochondrial ribosomal protein S11 Mrps11 499185 NM_001109148 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1372216_at AI010259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010259 /DB_XREF=gi:3224091 /DB_XREF=EST204710 /CLONE=RLUBW03 /FEA=EST /CNT=14 /TID=Rn.17547.1 /TIER=Stack /STK=13 /UG=Rn.17547 /UG_TITLE=ESTs AI010259 cytochrome b-561 domain containing 1 Cyb561d1 362017 NM_001108562 0016021 // integral to membrane // inferred from electronic annotation 1372217_at BM385348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385348 /DB_XREF=gi:18185401 /DB_XREF=UI-R-CN1-clv-i-16-0-UI.s1 /CLONE=UI-R-CN1-clv-i-16-0-UI /FEA=EST /CNT=14 /TID=Rn.12665.1 /TIER=Stack /STK=13 /UG=Rn.12665 /UG_TITLE=ESTs BM385348 transmembrane protein 199 Tmem199 303332 NM_001024992 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1372218_at BM384448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384448 /DB_XREF=gi:18184501 /DB_XREF=UI-R-CN1-cjn-m-16-0-UI.s1 /CLONE=UI-R-CN1-cjn-m-16-0-UI /FEA=EST /CNT=14 /TID=Rn.8578.1 /TIER=Stack /STK=13 /UG=Rn.8578 /UG_TITLE=ESTs, Weakly similar to retinoblastoma binding protein 7 (Rattus norvegicus) (R.norvegicus) BM384448 WD repeat domain 12 Wdr12 363237 NM_199410 0000463 // maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // not recorded /// 0000463 // maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // inferred from sequence or structural similarity /// 0000463 // maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // inferred from electronic annotation /// 0000466 // maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // not recorded /// 0000466 // maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // inferred from sequence or structural similarity /// 0000466 // maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007219 // Notch signaling pathway // not recorded /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from sequence or structural similarity /// 0008283 // cell proliferation // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005654 // nucleoplasm // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from electronic annotation /// 0030687 // preribosome, large subunit precursor // not recorded /// 0030687 // preribosome, large subunit precursor // inferred from sequence or structural similarity /// 0030687 // preribosome, large subunit precursor // inferred from electronic annotation /// 0070545 // PeBoW complex // not recorded /// 0070545 // PeBoW complex // inferred from sequence or structural similarity /// 0070545 // PeBoW complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372219_at AA012755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA012755 /DB_XREF=gi:1473817 /DB_XREF=RPU1801GC /FEA=EST /CNT=14 /TID=Rn.17580.1 /TIER=Stack /STK=13 /UG=Rn.17580 /UG_TITLE=ESTs, Highly similar to TPM1 RAT TROPOMYOSIN, FIBROBLAST ISOFORM 1 (R.norvegicus) AA012755 tropomyosin 2, beta Tpm2 500450 NM_001024345 0006936 // muscle contraction // not recorded /// 0043462 // regulation of ATPase activity // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005515 // protein binding // not recorded 1372220_at BI278846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278846 /DB_XREF=gi:14926087 /DB_XREF=UI-R-CX0-bwx-f-02-0-UI.s1 /CLONE=UI-R-CX0-bwx-f-02-0-UI /FEA=EST /CNT=13 /TID=Rn.8959.1 /TIER=Stack /STK=13 /UG=Rn.8959 /UG_TITLE=ESTs BI278846 1372221_at BM389079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389079 /DB_XREF=gi:18189132 /DB_XREF=UI-R-DZ0-cko-n-09-0-UI.s1 /CLONE=UI-R-DZ0-cko-n-09-0-UI /FEA=EST /CNT=13 /TID=Rn.3323.1 /TIER=Stack /STK=13 /UG=Rn.3323 /UG_TITLE=ESTs BM389079 ubiquitin-conjugating enzyme E2H Ube2h 296956 NM_001172127 1372222_at BI285621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285621 /DB_XREF=gi:14939457 /DB_XREF=UI-R-CW0-bvv-g-09-0-UI.s2 /CLONE=UI-R-CW0-bvv-g-09-0-UI /FEA=EST /CNT=13 /TID=Rn.38302.1 /TIER=Stack /STK=13 /UG=Rn.38302 /UG_TITLE=ESTs, Highly similar to Y258_HUMAN HYPOTHETICAL PROTEIN KIAA0258 (H.sapiens) BI285621 RGP1 retrograde golgi transport homolog (S. cerevisiae) Rgp1 313493 XM_001063666 /// XM_233379 1372223_at BG374299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374299 /DB_XREF=gi:13298771 /DB_XREF=UI-R-CV1-bsn-g-03-0-UI.s1 /CLONE=UI-R-CV1-bsn-g-03-0-UI /FEA=EST /CNT=13 /TID=Rn.18066.1 /TIER=Stack /STK=13 /UG=Rn.18066 /UG_TITLE=ESTs BG374299 1372224_at BE119694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119694 /DB_XREF=gi:8511799 /DB_XREF=UI-R-CA0-baz-h-01-0-UI.s1 /CLONE=UI-R-CA0-baz-h-01-0-UI /FEA=EST /CNT=13 /TID=Rn.20127.1 /TIER=Stack /STK=13 /UG=Rn.20127 /UG_TITLE=ESTs BE119694 CHMP family, member 7 Chmp7 364419 NM_001108872 0015031 // protein transport // inferred from electronic annotation /// 0045324 // late endosome to vacuole transport // not recorded 0000815 // ESCRT III complex // not recorded 0008565 // protein transporter activity // not recorded 1372225_at BE119802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119802 /DB_XREF=gi:8511907 /DB_XREF=UI-R-CA0-ban-b-11-0-UI.s1 /CLONE=UI-R-CA0-ban-b-11-0-UI /FEA=EST /CNT=13 /TID=Rn.8780.1 /TIER=Stack /STK=13 /UG=Rn.8780 /UG_TITLE=ESTs BE119802 1372226_at AI599349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599349 /DB_XREF=gi:4608397 /DB_XREF=EST251052 /CLONE=REMEQ73 /FEA=EST /CNT=13 /TID=Rn.24476.1 /TIER=Stack /STK=13 /UG=Rn.24476 /UG_TITLE=ESTs, Highly similar to Y411_HUMAN HYPOTHETICAL PROTEIN KIAA0411 (H.sapiens) AI599349 1372227_at AI177863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177863 /DB_XREF=gi:3728501 /DB_XREF=EST221512 /CLONE=RPLCH57 /FEA=EST /CNT=13 /TID=Rn.1373.1 /TIER=Stack /STK=13 /UG=Rn.1373 /UG_TITLE=ESTs AI177863 muted homolog (mouse) Muted 306868 NM_001107347 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // not recorded /// 0032474 // otolith morphogenesis // inferred from electronic annotation /// 0032474 // otolith morphogenesis // not recorded /// 0048066 // developmental pigmentation // inferred from electronic annotation /// 0048066 // developmental pigmentation // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372228_at BF420745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420745 /DB_XREF=gi:11408734 /DB_XREF=UI-R-BJ2-bpz-f-08-0-UI.s1 /CLONE=UI-R-BJ2-bpz-f-08-0-UI /FEA=EST /CNT=13 /TID=Rn.8135.1 /TIER=Stack /STK=13 /UG=Rn.8135 /UG_TITLE=ESTs, Weakly similar to T20235 hypothetical protein C54G4.6 - Caenorhabditis elegans (C.elegans) BF420745 acetylserotonin O-methyltransferase-like Asmtl 288527 NM_001105915 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1372229_at AI179119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179119 /DB_XREF=gi:3729757 /DB_XREF=EST222803 /CLONE=RSPCC11 /FEA=EST /CNT=13 /TID=Rn.18101.1 /TIER=Stack /STK=13 /UG=Rn.18101 /UG_TITLE=ESTs AI179119 pyruvate dehydrogenase kinase, isozyme 3 Pdk3 296849 NM_001106581 0007165 // signal transduction // inferred from electronic annotation /// 0010510 // regulation of acetyl-CoA biosynthetic process from pyruvate // not recorded /// 0018106 // peptidyl-histidine phosphorylation // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000155 // two-component sensor activity // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004673 // protein histidine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1372230_at AI105430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105430 /DB_XREF=gi:3709512 /DB_XREF=EST214719 /CLONE=RKIBK22 /FEA=EST /CNT=13 /TID=Rn.7115.1 /TIER=Stack /STK=13 /UG=Rn.7115 /UG_TITLE=ESTs, Weakly similar to T27851 hypothetical protein ZK418.5 - Caenorhabditis elegans (C.elegans) AI105430 transmembrane protein 147 Tmem147 292792 NM_001038494 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372231_at AA893532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893532 /DB_XREF=gi:3020411 /DB_XREF=EST197335 /CLONE=RLIAD60 /FEA=EST /CNT=13 /TID=Rn.12953.1 /TIER=Stack /STK=13 /UG=Rn.12953 /UG_TITLE=ESTs AA893532 transforming growth factor, beta receptor associated protein 1 Tgfbrap1 301373 NM_001106907 0007165 // signal transduction // not recorded /// 0045449 // regulation of transcription // not recorded 0016020 // membrane // not recorded 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005160 // transforming growth factor beta receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0046332 // SMAD binding // not recorded 1372232_at AI170808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170808 /DB_XREF=gi:3710848 /DB_XREF=EST216747 /CLONE=RMUBB74 /FEA=EST /CNT=13 /TID=Rn.35966.1 /TIER=Stack /STK=13 /UG=Rn.35966 /UG_TITLE=ESTs AI170808 WW domain binding protein 1 Wbp1 297381 NM_001106600 0005515 // protein binding // not recorded /// 0050699 // WW domain binding // not recorded 1372233_at AI228649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228649 /DB_XREF=gi:3812536 /DB_XREF=EST225344 /CLONE=RBRCX61 /FEA=EST /CNT=13 /TID=Rn.22956.1 /TIER=Stack /STK=13 /UG=Rn.22956 /UG_TITLE=ESTs, Weakly similar to Yeast YAE2 hypothetical protein (Caenorhabditis elegans) (C.elegans) AI228649 ERGIC and golgi 3 Ergic3 296306 NM_001106533 0005515 // protein binding // not recorded 1372234_at AA800950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800950 /DB_XREF=gi:2863905 /DB_XREF=EST190447 /CLONE=RLUAN46 /FEA=EST /CNT=13 /TID=Rn.3632.1 /TIER=Stack /STK=13 /UG=Rn.3632 /UG_TITLE=ESTs AA800950 Lix1 homolog (mouse)-like Lix1l 499677 NM_001024303 1372235_at BE104709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104709 /DB_XREF=gi:8496809 /DB_XREF=UI-R-BX0-ars-f-03-0-UI.s1 /CLONE=UI-R-BX0-ars-f-03-0-UI /FEA=EST /CNT=13 /TID=Rn.23814.1 /TIER=Stack /STK=13 /UG=Rn.23814 /UG_TITLE=ESTs BE104709 1372236_at BI279079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279079 /DB_XREF=gi:14926551 /DB_XREF=UI-R-DA0-byj-a-03-0-UI.s1 /CLONE=UI-R-DA0-byj-a-03-0-UI /FEA=EST /CNT=13 /TID=Rn.53929.1 /TIER=Stack /STK=13 /UG=Rn.53929 /UG_TITLE=ESTs BI279079 nucleotide-binding oligomerization domain containing 1 Nod1 500133 NM_001109236 0006917 // induction of apoptosis // not recorded /// 0006919 // activation of caspase activity // not recorded /// 0016045 // detection of bacterium // not recorded /// 0023034 // intracellular signaling pathway // not recorded /// 0032755 // positive regulation of interleukin-6 production // not recorded /// 0032760 // positive regulation of tumor necrosis factor production // not recorded /// 0032874 // positive regulation of stress-activated MAPK cascade // not recorded /// 0042228 // interleukin-8 biosynthetic process // not recorded /// 0042742 // defense response to bacterium // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0046330 // positive regulation of JNK cascade // not recorded /// 0050830 // defense response to Gram-positive bacterium // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016323 // basolateral plasma membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0050700 // CARD domain binding // not recorded 1372237_at BI298306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298306 /DB_XREF=gi:14974581 /DB_XREF=UI-R-CV2-chh-f-11-0-UI.s1 /CLONE=UI-R-CV2-chh-f-11-0-UI /FEA=EST /CNT=13 /TID=Rn.39045.1 /TIER=Stack /STK=13 /UG=Rn.39045 /UG_TITLE=ESTs BI298306 1372238_at BG375258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375258 /DB_XREF=gi:13299730 /DB_XREF=UI-R-CV1-bsy-c-04-0-UI.s1 /CLONE=UI-R-CV1-bsy-c-04-0-UI /FEA=EST /CNT=13 /TID=Rn.76409.1 /TIER=Stack /STK=13 /UG=Rn.76409 /UG_TITLE=ESTs BG375258 1372239_at AW527228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527228 /DB_XREF=gi:7169642 /DB_XREF=UI-R-BO1-ajm-h-11-0-UI.s1 /CLONE=UI-R-BO1-ajm-h-11-0-UI /FEA=EST /CNT=13 /TID=Rn.46460.1 /TIER=Stack /STK=13 /UG=Rn.46460 /UG_TITLE=ESTs AW527228 1372240_at BG378841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378841 /DB_XREF=gi:13303313 /DB_XREF=UI-R-CV1-bvt-e-04-0-UI.s1 /CLONE=UI-R-CV1-bvt-e-04-0-UI /FEA=EST /CNT=13 /TID=Rn.23558.1 /TIER=Stack /STK=13 /UG=Rn.23558 /UG_TITLE=ESTs, Highly similar to JC5556 adhalin - mouse (M.musculus) BG378841 sarcoglycan, alpha (dystrophin-associated glycoprotein) Sgca 303468 NM_001107039 0016012 // sarcoglycan complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0042383 // sarcolemma // not recorded /// 0045121 // membrane raft // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1372241_at AI411388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411388 /DB_XREF=gi:4254892 /DB_XREF=EST239682 /CLONE=RKIES64 /FEA=EST /CNT=78 /TID=Rn.266.1 /TIER=Stack /STK=12 /UG=Rn.266 /UG_TITLE=ESTs, Highly similar to OAZ RAT ORNITHINE DECARBOXYLASE ANTIZYME (R.norvegicus) AI411388 ornithine decarboxylase antizyme 1 Oaz1 25502 NM_139081 0050790 // regulation of catalytic activity // not recorded 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008073 // ornithine decarboxylase inhibitor activity // inferred from electronic annotation /// 0008073 // ornithine decarboxylase inhibitor activity // not recorded 1372242_at AI169598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169598 /DB_XREF=gi:3709638 /DB_XREF=EST215483 /CLONE=RKIBV07 /FEA=EST /CNT=31 /TID=Rn.2404.1 /TIER=Stack /STK=12 /UG=Rn.2404 /UG_TITLE=ESTs AI169598 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked Ddx3x 317335 NM_001108246 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1372243_at BE112280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112280 /DB_XREF=gi:8504385 /DB_XREF=UI-R-BJ1-avl-g-10-0-UI.s1 /CLONE=UI-R-BJ1-avl-g-10-0-UI /FEA=EST /CNT=61 /TID=Rn.4011.1 /TIER=Stack /STK=12 /UG=Rn.4011 /UG_TITLE=ESTs, Highly similar to MO25 MOUSE MO25 PROTEIN (M.musculus) BE112280 calcium binding protein 39 Cab39 301574 NM_001106924 0046320 // regulation of fatty acid oxidation // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay 0043234 // protein complex // inferred from direct assay 0004674 // protein serine/threonine kinase activity // inferred from mutant phenotype /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372244_at BI285336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285336 /DB_XREF=gi:14938866 /DB_XREF=UI-R-DB0-byy-h-04-0-UI.s1 /CLONE=UI-R-DB0-byy-h-04-0-UI /FEA=EST /CNT=61 /TID=Rn.4011.1 /TIER=Stack /STK=10 /UG=Rn.4011 /UG_TITLE=ESTs, Highly similar to MO25 MOUSE MO25 PROTEIN (M.musculus) BI285336 calcium binding protein 39 Cab39 301574 NM_001106924 0046320 // regulation of fatty acid oxidation // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay 0043234 // protein complex // inferred from direct assay 0004674 // protein serine/threonine kinase activity // inferred from mutant phenotype /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372245_at AA894272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894272 /DB_XREF=gi:4132376 /DB_XREF=EST198075 /CLONE=RSPAU41 /FEA=EST /CNT=23 /TID=Rn.28195.2 /TIER=Stack /STK=12 /UG=Rn.28195 /LL=29244 /UG_GENE=Gch /UG_TITLE=GTP cyclohydrolase 1 AA894272 cytosolic iron-sulfur protein assembly 1 homolog (S. cerevisiae) Ciao1 29231 NM_001008766 0016226 // iron-sulfur cluster assembly // not recorded /// 0016226 // iron-sulfur cluster assembly // inferred from sequence or structural similarity /// 0016226 // iron-sulfur cluster assembly // inferred from electronic annotation 0071817 // MMXD complex // inferred from sequence or structural similarity 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372246_at BI294750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294750 /DB_XREF=gi:14957508 /DB_XREF=UI-R-DK0-ceb-f-08-0-UI.s1 /CLONE=UI-R-DK0-ceb-f-08-0-UI /FEA=EST /CNT=26 /TID=Rn.1912.1 /TIER=Stack /STK=12 /UG=Rn.1912 /UG_TITLE=ESTs, Weakly similar to BRCA1-associated RING domain protein 1 (Rattus norvegicus) (R.norvegicus) BI294750 osteoclast stimulating factor 1 Ostf1 259275 NM_148892 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1372247_at BF282907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282907 /DB_XREF=gi:11213977 /DB_XREF=EST447498 /CLONE=RGIDU82 /FEA=EST /CNT=39 /TID=Rn.4221.1 /TIER=Stack /STK=12 /UG=Rn.4221 /UG_TITLE=ESTs, Highly similar to S66254 dolichyl-diphosphooligosaccharide--protein glycotransferase (H.sapiens) BF282907 dolichyl-diphosphooligosaccharide-protein glycosyltransferase Ddost 313648 NM_001012104 0006496 // protein amino acid terminal N-glycosylation // not recorded /// 0018279 // protein N-linked glycosylation via asparagine // inferred from electronic annotation /// 0034097 // response to cytokine stimulus // not recorded /// 0042110 // T cell activation // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0004579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from electronic annotation /// 0004579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation 1372248_at AI411742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411742 /DB_XREF=gi:4255246 /DB_XREF=EST240036 /CLONE=RPLDJ90 /FEA=EST /CNT=20 /TID=Rn.17204.1 /TIER=Stack /STK=12 /UG=Rn.17204 /UG_TITLE=ESTs AI411742 sestrin 1 Sesn1 294518 NM_001106396 0007050 // cell cycle arrest // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1372249_at BE108148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108148 /DB_XREF=gi:8500253 /DB_XREF=UI-R-BS1-ayw-a-03-0-UI.s1 /CLONE=UI-R-BS1-ayw-a-03-0-UI /FEA=EST /CNT=35 /TID=Rn.1292.2 /TIER=Stack /STK=12 /UG=Rn.1292 /LL=25578 /UG_GENE=Ywhaz /UG_TITLE=Tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, zeta polypeptide BE108148 1372250_at BI294932 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294932 /DB_XREF=gi:14957870 /DB_XREF=UI-R-DK0-ced-g-09-0-UI.s1 /CLONE=UI-R-DK0-ced-g-09-0-UI /FEA=EST /CNT=21 /TID=Rn.1536.1 /TIER=Stack /STK=12 /UG=Rn.1536 /UG_TITLE=ESTs BI294932 dysbindin (dystrobrevin binding protein 1) domain containing 2 Dbndd2 499941 NM_001047111 0006469 // negative regulation of protein kinase activity // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372251_at BI282892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282892 /DB_XREF=gi:14934108 /DB_XREF=UI-R-CW0s-ccc-f-02-0-UI.s1 /CLONE=UI-R-CW0s-ccc-f-02-0-UI /FEA=EST /CNT=19 /TID=Rn.17033.1 /TIER=Stack /STK=12 /UG=Rn.17033 /UG_TITLE=ESTs, Weakly similar to RBMA_RAT RNA-BINDING PROTEIN 10 (RNA BINDING MOTIF PROTEIN 10) (S1-1 PROTEIN) (R.norvegicus) BI282892 RNA binding motif protein 5 Rbm5 300996 NM_001100548 0000245 // spliceosome assembly // not recorded /// 0000245 // spliceosome assembly // inferred from sequence or structural similarity /// 0000245 // spliceosome assembly // inferred from electronic annotation /// 0000381 // regulation of alternative nuclear mRNA splicing, via spliceosome // not recorded /// 0000381 // regulation of alternative nuclear mRNA splicing, via spliceosome // inferred from sequence or structural similarity /// 0000381 // regulation of alternative nuclear mRNA splicing, via spliceosome // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0003729 // mRNA binding // inferred from sequence or structural similarity /// 0003729 // mRNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372252_at BE112892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112892 /DB_XREF=gi:8504997 /DB_XREF=UI-R-BJ1-awa-a-10-0-UI.s1 /CLONE=UI-R-BJ1-awa-a-10-0-UI /FEA=EST /CNT=19 /TID=Rn.2918.1 /TIER=Stack /STK=12 /UG=Rn.2918 /UG_TITLE=ESTs, Highly similar to AF129332 1 MUM2 (H.sapiens) BE112892 trafficking protein particle complex 1 Trappc1 287427 NM_001039378 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005801 // cis-Golgi network // inferred from electronic annotation /// 0030008 // TRAPP complex // inferred from electronic annotation /// 0030008 // TRAPP complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372253_at AI408162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408162 /DB_XREF=gi:4251666 /DB_XREF=EST236452 /CLONE=ROVEI79 /FEA=EST /CNT=19 /TID=Rn.7239.1 /TIER=Stack /STK=12 /UG=Rn.7239 /UG_TITLE=ESTs, Moderately similar to CAF1 MOUSE CCR4-ASSOCIATED FACTOR 1 (M.musculus) AI408162 CCR4-NOT transcription complex, subunit 8 Cnot8 363603 NM_001008382 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372254_at AW915763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915763 /DB_XREF=gi:8081470 /DB_XREF=EST347067 /CLONE=RGIDA42 /FEA=EST /CNT=18 /TID=Rn.947.1 /TIER=Stack /STK=12 /UG=Rn.947 /UG_TITLE=ESTs, Moderately similar to IC1_MOUSE PLASMA PROTEASE C1 INHIBITOR PRECURSOR (C1 INH) (C1INH) (M.musculus) AW915763 serine (or cysteine) peptidase inhibitor, clade G, member 1 Serping1 295703 NM_199093 0001869 // negative regulation of complement activation, lectin pathway // not recorded /// 0001869 // negative regulation of complement activation, lectin pathway // inferred from sequence or structural similarity /// 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // not recorded /// 0045087 // innate immune response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0031093 // platelet alpha granule lumen // not recorded 0001848 // complement binding // not recorded /// 0004867 // serine-type endopeptidase inhibitor activity // not recorded /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from sequence or structural similarity /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1372255_at BF283284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283284 /DB_XREF=gi:11214354 /DB_XREF=EST447875 /CLONE=RGIDZ78 /FEA=EST /CNT=18 /TID=Rn.18711.1 /TIER=Stack /STK=12 /UG=Rn.18711 /UG_TITLE=ESTs, Highly similar to SYR_HUMAN ARGINYL-TRNA SYNTHETASE (H.sapiens) BF283284 arginyl-tRNA synthetase Rars 287191 NM_001105777 0006420 // arginyl-tRNA aminoacylation // inferred from direct assay 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded /// 0017101 // aminoacyl-tRNA synthetase multienzyme complex // inferred from direct assay 0000049 // tRNA binding // inferred from direct assay /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0004814 // arginine-tRNA ligase activity // inferred from direct assay /// 0004814 // arginine-tRNA ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0016874 // ligase activity // inferred from electronic annotation /// 0034618 // arginine binding // inferred from direct assay 1372256_at BF550246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550246 /DB_XREF=gi:11659934 /DB_XREF=UI-R-E0-cx-g-02-0-UI.r1 /CLONE=UI-R-E0-cx-g-02-0-UI /FEA=EST /CNT=18 /TID=Rn.8405.1 /TIER=Stack /STK=12 /UG=Rn.8405 /UG_TITLE=ESTs, Highly similar to CYSTEINE-RICH INTESTINAL PROTEIN (R.norvegicus) BF550246 cysteine-rich intestinal protein Crip 691657 NM_001134933 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 1372257_at BG662579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG662579 /DB_XREF=gi:13884501 /DB_XREF=DRAAJA04 /CLONE=DRAAJA04 /FEA=EST /CNT=19 /TID=Rn.7356.1 /TIER=Stack /STK=12 /UG=Rn.7356 /UG_TITLE=ESTs BG662579 1372258_at AI102935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102935 /DB_XREF=gi:3707569 /DB_XREF=EST212224 /CLONE=REMBV14 /FEA=EST /CNT=18 /TID=Rn.6644.1 /TIER=Stack /STK=12 /UG=Rn.6644 /UG_TITLE=ESTs AI102935 hypothetical protein LOC100192313 LOC100192313 100192313 NM_001136261 1372259_at BI295054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295054 /DB_XREF=gi:14958114 /DB_XREF=UI-R-DK0-cef-c-09-0-UI.s1 /CLONE=UI-R-DK0-cef-c-09-0-UI /FEA=EST /CNT=18 /TID=Rn.17161.1 /TIER=Stack /STK=12 /UG=Rn.17161 /UG_TITLE=ESTs BI295054 DEK oncogene Dek 306817 NM_001004255 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0042393 // histone binding // inferred from electronic annotation /// 0042393 // histone binding // not recorded 1372260_at BI296304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296304 /DB_XREF=gi:14960614 /DB_XREF=UI-R-DK0-cey-g-11-0-UI.s1 /CLONE=UI-R-DK0-cey-g-11-0-UI /FEA=EST /CNT=18 /TID=Rn.995.1 /TIER=Stack /STK=12 /UG=Rn.995 /UG_TITLE=ESTs BI296304 rogdi homolog (Drosophila) Rogdi 287061 NM_001024864 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 1372261_at AI409067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409067 /DB_XREF=gi:4252571 /DB_XREF=EST237359 /CLONE=RKIDO56 /FEA=EST /CNT=17 /TID=Rn.3650.1 /TIER=Stack /STK=12 /UG=Rn.3650 /UG_TITLE=ESTs AI409067 1372262_at BI285626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285626 /DB_XREF=gi:14939466 /DB_XREF=UI-R-CW0-bvv-h-07-0-UI.s2 /CLONE=UI-R-CW0-bvv-h-07-0-UI /FEA=EST /CNT=17 /TID=Rn.1750.1 /TIER=Stack /STK=12 /UG=Rn.1750 /UG_TITLE=ESTs BI285626 hypothetical protein LOC100360120 LOC100360120 100360120 XM_002726470 /// XM_002729434 1372263_at BF396485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396485 /DB_XREF=gi:11381459 /DB_XREF=UI-R-BS2-bdy-f-12-0-UI.s1 /CLONE=UI-R-BS2-bdy-f-12-0-UI /FEA=EST /CNT=17 /TID=Rn.8094.1 /TIER=Stack /STK=12 /UG=Rn.8094 /UG_TITLE=ESTs BF396485 1372264_at BI277460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277460 /DB_XREF=gi:14923362 /DB_XREF=UI-R-CY0-bxq-d-05-0-UI.s1 /CLONE=UI-R-CY0-bxq-d-05-0-UI /FEA=EST /CNT=17 /TID=Rn.33785.1 /TIER=Stack /STK=12 /UG=Rn.33785 /UG_TITLE=ESTs, Highly similar to PHOSPHOENOLPYRUVATE CARBOXYKINASE, CYTOSOLIC (R.norvegicus) BI277460 phosphoenolpyruvate carboxykinase 1 (soluble) Pck1 362282 NM_198780 0006006 // glucose metabolic process // inferred from mutant phenotype /// 0006006 // glucose metabolic process // not recorded /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006094 // gluconeogenesis // inferred from direct assay /// 0006094 // gluconeogenesis // not recorded /// 0006094 // gluconeogenesis // traceable author statement /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006107 // oxaloacetate metabolic process // inferred from direct assay /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // not recorded /// 0014823 // response to activity // inferred from expression pattern /// 0032868 // response to insulin stimulus // not recorded /// 0032868 // response to insulin stimulus // inferred from sequence or structural similarity /// 0032868 // response to insulin stimulus // inferred from electronic annotation /// 0042593 // glucose homeostasis // inferred from direct assay /// 0046327 // glycerol biosynthetic process from pyruvate // inferred from direct assay /// 0046327 // glycerol biosynthetic process from pyruvate // not recorded /// 0046327 // glycerol biosynthetic process from pyruvate // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004611 // phosphoenolpyruvate carboxykinase activity // inferred from direct assay /// 0004611 // phosphoenolpyruvate carboxykinase activity // not recorded /// 0004611 // phosphoenolpyruvate carboxykinase activity // inferred from electronic annotation /// 0004613 // phosphoenolpyruvate carboxykinase (GTP) activity // inferred from direct assay /// 0004613 // phosphoenolpyruvate carboxykinase (GTP) activity // not recorded /// 0004613 // phosphoenolpyruvate carboxykinase (GTP) activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation /// 0017076 // purine nucleotide binding // inferred from electronic annotation /// 0019003 // GDP binding // inferred from direct assay /// 0030145 // manganese ion binding // inferred from direct assay /// 0030145 // manganese ion binding // not recorded /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0031406 // carboxylic acid binding // inferred from direct assay /// 0031406 // carboxylic acid binding // not recorded /// 0031406 // carboxylic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372265_at AI172218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172218 /DB_XREF=gi:3712258 /DB_XREF=EST218216 /CLONE=RMUBW39 /FEA=EST /CNT=17 /TID=Rn.3813.1 /TIER=Stack /STK=12 /UG=Rn.3813 /UG_TITLE=ESTs, Weakly similar to T45042 hypothetical protein Y39B6B.p (imported) - Caenorhabditis elegans (C.elegans) AI172218 similar to RIKEN cDNA 2810002N01 RGD1304719 299341 NM_001037769 0008629 // induction of apoptosis by intracellular signals // inferred from electronic annotation /// 0008629 // induction of apoptosis by intracellular signals // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1372266_at BI281607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281607 /DB_XREF=gi:14931507 /DB_XREF=UI-R-CT0s-cau-d-01-0-UI.s1 /CLONE=UI-R-CT0s-cau-d-01-0-UI /FEA=EST /CNT=20 /TID=Rn.8189.1 /TIER=Stack /STK=12 /UG=Rn.8189 /UG_TITLE=ESTs, Highly similar to DPOZ_MOUSE DNA polymerase zeta catalytic subunit (Seizure related protein 4) (M.musculus) BI281607 REV3-like, catalytic subunit of DNA polymerase zeta (yeast) Rev3l 309812 NM_001083966 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006260 // DNA replication // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006281 // DNA repair // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation 1372267_at AI233729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233729 /DB_XREF=gi:3817609 /DB_XREF=EST230417 /CLONE=RKIDJ39 /FEA=EST /CNT=20 /TID=Rn.13415.1 /TIER=Stack /STK=12 /UG=Rn.13415 /UG_TITLE=ESTs, Moderately similar to PSD5_HUMAN 26S PROTEASOME SUBUNIT S5B (H.sapiens) AI233729 proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 Psmd5 296651 NM_001106569 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation /// 0008540 // proteasome regulatory particle, base subcomplex // not recorded /// 0008540 // proteasome regulatory particle, base subcomplex // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1372268_at BI294852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294852 /DB_XREF=gi:14957710 /DB_XREF=UI-R-DK0-cec-h-07-0-UI.s1 /CLONE=UI-R-DK0-cec-h-07-0-UI /FEA=EST /CNT=19 /TID=Rn.3081.1 /TIER=Stack /STK=12 /UG=Rn.3081 /UG_TITLE=ESTs BI294852 1372269_at AI229534 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229534 /DB_XREF=gi:3813421 /DB_XREF=EST226229 /CLONE=REMCH86 /FEA=EST /CNT=19 /TID=Rn.12960.1 /TIER=Stack /STK=12 /UG=Rn.12960 /UG_TITLE=ESTs, Weakly similar to T37473 transcription regulation mediator c-MED6 - Caenorhabditis elegans (C.elegans) AI229534 mediator complex subunit 6 Med6 299180 NM_001106742 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016592 // mediator complex // inferred from electronic annotation /// 0016592 // mediator complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003713 // transcription coactivator activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation 1372270_at BM391270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391270 /DB_XREF=gi:18191323 /DB_XREF=UI-R-DY0-ckq-o-22-0-UI.s1 /CLONE=UI-R-DY0-ckq-o-22-0-UI /FEA=EST /CNT=18 /TID=Rn.11868.1 /TIER=Stack /STK=12 /UG=Rn.11868 /UG_TITLE=ESTs, Highly similar to UDP-N-ACETYLGLUCOSAMINE--DOLICHYL-PHOSPHATE N-ACETYLGLUCOSAMINEPHOSPHOTRANSFERASE (M.musculus) BM391270 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) Dpagt1 300668 NM_199388 0006047 // UDP-N-acetylglucosamine metabolic process // inferred from direct assay /// 0006487 // protein N-linked glycosylation // not recorded /// 0006487 // protein N-linked glycosylation // inferred from electronic annotation /// 0006488 // dolichol-linked oligosaccharide biosynthetic process // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0019348 // dolichol metabolic process // inferred from direct assay /// 0019408 // dolichol biosynthetic process // inferred from electronic annotation /// 0019408 // dolichol biosynthetic process // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003975 // UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity // inferred from direct assay /// 0003975 // UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity // not recorded /// 0003975 // UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity // non-traceable author statement /// 0003975 // UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity // inferred from electronic annotation /// 0008963 // phospho-N-acetylmuramoyl-pentapeptide-transferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1372271_at AI172263 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172263 /DB_XREF=gi:3712303 /DB_XREF=EST218264 /CLONE=RMUBX10 /FEA=EST /CNT=18 /TID=Rn.17628.1 /TIER=Stack /STK=12 /UG=Rn.17628 /UG_TITLE=ESTs AI172263 RNA binding motif protein 38 Rbm38 366262 NM_001108965 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // not recorded /// 0006978 // DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0043484 // regulation of RNA splicing // not recorded /// 0070935 // 3'-UTR-mediated mRNA stabilization // not recorded 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0003730 // mRNA 3'-UTR binding // not recorded 1372272_at BF394074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394074 /DB_XREF=gi:11378938 /DB_XREF=UI-R-CA0-bgy-g-05-0-UI.s1 /CLONE=UI-R-CA0-bgy-g-05-0-UI /FEA=EST /CNT=17 /TID=Rn.17306.1 /TIER=Stack /STK=12 /UG=Rn.17306 /UG_TITLE=ESTs BF394074 Hypothetical protein LOC692032 LOC692032 692032 XM_001081273 1372273_at AA944212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944212 /DB_XREF=gi:3104128 /DB_XREF=EST199711 /CLONE=REMAD70 /FEA=EST /CNT=17 /TID=Rn.7693.1 /TIER=Stack /STK=12 /UG=Rn.7693 /UG_TITLE=ESTs AA944212 glycophorin C (Gerbich blood group) Gypc 364837 NM_001013233 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372274_at AI009727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009727 /DB_XREF=gi:3223559 /DB_XREF=EST204178 /CLONE=RLUBN73 /FEA=EST /CNT=17 /TID=Rn.7403.1 /TIER=Stack /STK=12 /UG=Rn.7403 /UG_TITLE=ESTs AI009727 1372275_at BI296757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296757 /DB_XREF=gi:14961503 /DB_XREF=UI-R-CV2-cgv-h-12-0-UI.s1 /CLONE=UI-R-CV2-cgv-h-12-0-UI /FEA=EST /CNT=17 /TID=Rn.11436.1 /TIER=Stack /STK=12 /UG=Rn.11436 /UG_TITLE=ESTs BI296757 1372276_at BG378613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378613 /DB_XREF=gi:13303085 /DB_XREF=UI-R-CV1-bvr-e-09-0-UI.s1 /CLONE=UI-R-CV1-bvr-e-09-0-UI /FEA=EST /CNT=16 /TID=Rn.7332.1 /TIER=Stack /STK=12 /UG=Rn.7332 /UG_TITLE=ESTs BG378613 1-acylglycerol-3-phosphate O-acyltransferase 3 Agpat3 294324 NM_001106378 0008152 // metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0008415 // acyltransferase activity // inferred from electronic annotation /// 0046027 // phospholipid:diacylglycerol acyltransferase activity // not recorded 1372277_at BI274673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274673 /DB_XREF=gi:14885808 /DB_XREF=UI-R-CX0-bws-f-06-0-UI.s1 /CLONE=UI-R-CX0-bws-f-06-0-UI /FEA=EST /CNT=16 /TID=Rn.13582.1 /TIER=Stack /STK=12 /UG=Rn.13582 /UG_TITLE=ESTs BI274673 similar to aldehyde dehydrogenase 4 family, member A1 LOC641316 641316 NM_001134698 0006560 // proline metabolic process // inferred from electronic annotation /// 0006561 // proline biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0003842 // 1-pyrroline-5-carboxylate dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1372278_at BF404480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404480 /DB_XREF=gi:11392455 /DB_XREF=UI-R-CA1-bif-h-02-0-UI.s1 /CLONE=UI-R-CA1-bif-h-02-0-UI /FEA=EST /CNT=16 /TID=Rn.63414.1 /TIER=Stack /STK=12 /UG=Rn.63414 /UG_TITLE=ESTs BF404480 1372279_at AA892271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892271 /DB_XREF=gi:3019150 /DB_XREF=EST196074 /CLONE=RKIAO45 /FEA=EST /CNT=16 /TID=Rn.3767.1 /TIER=Stack /STK=12 /UG=Rn.3767 /UG_TITLE=ESTs AA892271 BCL2-like 13 (apoptosis facilitator) Bcl2l13 312682 NM_001107885 0042981 // regulation of apoptosis // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0016021 // integral to membrane // not recorded 1372280_at BI295982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295982 /DB_XREF=gi:14959971 /DB_XREF=UI-R-DK0-cfd-a-08-0-UI.s1 /CLONE=UI-R-DK0-cfd-a-08-0-UI /FEA=EST /CNT=16 /TID=Rn.3439.1 /TIER=Stack /STK=12 /UG=Rn.3439 /UG_TITLE=ESTs, Weakly similar to S68418 protein phosphatase 1M chain M110 isoform - rat (R.norvegicus) BI295982 ankyrin repeat and SOCS box-containing 2 Asb2 299266 NM_001011984 0023034 // intracellular signaling pathway // inferred from electronic annotation 1372281_at AA819059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819059 /DB_XREF=gi:4227724 /DB_XREF=UI-R-A0-ba-h-04-0-UI.s1 /CLONE=UI-R-A0-ba-h-04-0-UI /FEA=EST /CNT=16 /TID=Rn.1612.1 /TIER=Stack /STK=12 /UG=Rn.1612 /UG_TITLE=ESTs, Weakly similar to B Chain B, Crystal Structure Of The Human Acyl Protein Thioesterase 1 At 1.5 A Resolutio (H.sapiens) AA819059 lysophospholipase-like 1 Lyplal1 289357 NM_001105986 0016787 // hydrolase activity // inferred from electronic annotation 1372282_at BF283238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283238 /DB_XREF=gi:11214308 /DB_XREF=EST447829 /CLONE=RGIDZ22 /FEA=EST /CNT=16 /TID=Rn.17558.1 /TIER=Stack /STK=12 /UG=Rn.17558 /UG_TITLE=ESTs, Weakly similar to GSHH RAT PHOSPHOLIPID HYDROPEROXIDE GLUTATHIONE PEROXIDASE (R.norvegicus) BF283238 glutathione peroxidase 8 Gpx8 294744 NM_001106411 0006979 // response to oxidative stress // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0004601 // peroxidase activity // inferred from electronic annotation /// 0004602 // glutathione peroxidase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1372283_at AA800622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800622 /DB_XREF=gi:2863577 /DB_XREF=EST190119 /CLONE=RLUAB76 /FEA=EST /CNT=22 /TID=Rn.22788.1 /TIER=Stack /STK=12 /UG=Rn.22788 /UG_TITLE=ESTs, Weakly similar to K08H10.9.p (Caenorhabditis elegans) (C.elegans) AA800622 trafficking protein particle complex 6B Trappc6b 299075 NM_001106733 0006182 // cGMP biosynthetic process // inferred from electronic annotation 0004383 // guanylate cyclase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation 1372284_at AI104319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104319 /DB_XREF=gi:3704959 /DB_XREF=EST213608 /CLONE=RHECA30 /FEA=EST /CNT=18 /TID=Rn.925.1 /TIER=Stack /STK=12 /UG=Rn.925 /UG_TITLE=ESTs, Weakly similar to S40928 hypothetical protein ZK1098.5 - Caenorhabditis elegans (C.elegans) AI104319 trafficking protein particle complex 3 Trappc3 362599 NM_001008376 0006182 // cGMP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0000139 // Golgi membrane // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0030008 // TRAPP complex // inferred from electronic annotation /// 0030008 // TRAPP complex // not recorded 0004383 // guanylate cyclase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0020037 // heme binding // inferred from electronic annotation 1372285_at BM389061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389061 /DB_XREF=gi:18189114 /DB_XREF=UI-R-DZ0-cko-j-11-0-UI.s1 /CLONE=UI-R-DZ0-cko-j-11-0-UI /FEA=EST /CNT=17 /TID=Rn.12133.1 /TIER=Stack /STK=12 /UG=Rn.12133 /UG_TITLE=ESTs, Weakly similar to T01D3.5.p (Caenorhabditis elegans) (C.elegans) BM389061 1372286_at BI295929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295929 /DB_XREF=gi:14959866 /DB_XREF=UI-R-DK0-cfc-d-08-0-UI.s1 /CLONE=UI-R-DK0-cfc-d-08-0-UI /FEA=EST /CNT=17 /TID=Rn.20318.1 /TIER=Stack /STK=12 /UG=Rn.20318 /UG_TITLE=ESTs, Weakly similar to CD63 RAT CD63 ANTIGEN (R.norvegicus) BI295929 tetraspanin 6 Tspan6 302313 NM_001100672 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation 1372287_at AI236780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236780 /DB_XREF=gi:4136243 /DB_XREF=EST233342 /CLONE=ROVDK43 /FEA=EST /CNT=17 /TID=Rn.11877.1 /TIER=Stack /STK=12 /UG=Rn.11877 /UG_TITLE=ESTs AI236780 myotubularin related protein 6 Mtmr6 305935 NM_001107268 0016311 // dephosphorylation // inferred from electronic annotation 0005737 // cytoplasm // not recorded 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0015269 // calcium-activated potassium channel activity // not recorded /// 0016791 // phosphatase activity // inferred from electronic annotation 1372288_at BE109521 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109521 /DB_XREF=gi:8501626 /DB_XREF=UI-R-BJ1-avp-b-06-0-UI.s1 /CLONE=UI-R-BJ1-avp-b-06-0-UI /FEA=EST /CNT=17 /TID=Rn.6378.1 /TIER=Stack /STK=12 /UG=Rn.6378 /UG_TITLE=ESTs BE109521 zinc finger, MIZ-type containing 2 Zmiz2 289783 NM_001100507 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0043596 // nuclear replication fork // inferred from electronic annotation /// 0043596 // nuclear replication fork // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from electronic annotation /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded 1372289_at AI170792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170792 /DB_XREF=gi:3710832 /DB_XREF=EST216731 /CLONE=RMUBB57 /FEA=EST /CNT=16 /TID=Rn.19224.1 /TIER=Stack /STK=12 /UG=Rn.19224 /UG_TITLE=ESTs, Weakly similar to solute carrier family 25 (carnitineacylcarnitine translocase), member 20 (Rattus norvegicus) (R.norvegicus) AI170792 solute carrier family 25 (mitochondrial carrier, Aralar), member 12 Slc25a12 362145 XM_002726186 /// XM_342445 0055085 // transmembrane transport // inferred from electronic annotation 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1372290_at BI275979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275979 /DB_XREF=gi:14920435 /DB_XREF=UI-R-CX0-bxi-f-12-0-UI.s1 /CLONE=UI-R-CX0-bxi-f-12-0-UI /FEA=EST /CNT=16 /TID=Rn.16164.1 /TIER=Stack /STK=12 /UG=Rn.16164 /UG_TITLE=ESTs, Highly similar to RDP MOUSE RD PROTEIN (M.musculus) BI275979 RD RNA-binding protein Rdbp 294258 NM_001165901 /// NM_212548 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372291_at BI274517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274517 /DB_XREF=gi:14885496 /DB_XREF=UI-R-CW0-bwj-g-07-0-UI.s1 /CLONE=UI-R-CW0-bwj-g-07-0-UI /FEA=EST /CNT=15 /TID=Rn.4321.1 /TIER=Stack /STK=12 /UG=Rn.4321 /UG_TITLE=ESTs, Moderately similar to OXA1_HUMAN Cytochrome oxidase biogenesis protein OXA1, mitochondrial precursor (OXA1-like protein) (OXA1Hs) (H.sapiens) BI274517 oxidase assembly 1-like Oxa1l 691393 NM_001168583 0009060 // aerobic respiration // not recorded /// 0032780 // negative regulation of ATPase activity // not recorded /// 0032981 // mitochondrial respiratory chain complex I assembly // not recorded /// 0033615 // mitochondrial proton-transporting ATP synthase complex assembly // not recorded /// 0051205 // protein insertion into membrane // inferred from electronic annotation /// 0051354 // negative regulation of oxidoreductase activity // not recorded 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032592 // integral to mitochondrial membrane // not recorded /// 0043234 // protein complex // not recorded 1372292_at AI009732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009732 /DB_XREF=gi:3223564 /DB_XREF=EST204183 /CLONE=RLUBN79 /FEA=EST /CNT=15 /TID=Rn.6430.1 /TIER=Stack /STK=12 /UG=Rn.6430 /UG_TITLE=ESTs AI009732 Serine/threonine kinase 24 (STE20 homolog, yeast) Stk24 361092 NM_001127494 0006468 // protein phosphorylation // inferred from electronic annotation /// 0048680 // positive regulation of axon regeneration // inferred from mutant phenotype 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1372293_at AF023090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF023090 /DB_XREF=gi:2583029 /DB_XREF=AF023090 /CLONE=ovulation.G3-128 /FEA=EST /CNT=15 /TID=Rn.3007.1 /TIER=Stack /STK=12 /UG=Rn.3007 /UG_TITLE=ESTs, Weakly similar to env polyprotein, retrovirus-related (M.musculus) AF023090 1372294_at BI278571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278571 /DB_XREF=gi:14925548 /DB_XREF=UI-R-CW0-bxn-c-11-0-UI.s1 /CLONE=UI-R-CW0-bxn-c-11-0-UI /FEA=EST /CNT=15 /TID=Rn.8933.1 /TIER=Stack /STK=12 /UG=Rn.8933 /UG_TITLE=ESTs BI278571 peroxidasin homolog (Drosophila) Pxdn 554172 XM_001053103 /// XM_002726729 0006979 // response to oxidative stress // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0042744 // hydrogen peroxide catabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded 0005615 // extracellular space // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0031012 // extracellular matrix // not recorded 0004601 // peroxidase activity // inferred from electronic annotation /// 0004601 // peroxidase activity // not recorded /// 0005201 // extracellular matrix structural constituent // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0020037 // heme binding // not recorded 1372295_at BF551356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551356 /DB_XREF=gi:11661086 /DB_XREF=UI-R-C0-in-e-04-0-UI.r1 /CLONE=UI-R-C0-in-e-04-0-UI /FEA=EST /CNT=15 /TID=Rn.28396.2 /TIER=Stack /STK=12 /UG=Rn.28396 /UG_TITLE=ESTs, Highly similar to 40S RIBOSOMAL PROTEIN S25 (R.norvegicus) BF551356 nuclear prelamin A recognition factor Narf 360681 NM_001039207 0005634 // nucleus // inferred from electronic annotation /// 0005638 // lamin filament // not recorded /// 0031981 // nuclear lumen // not recorded 0005521 // lamin binding // not recorded 1372296_at AA800892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800892 /DB_XREF=gi:2863847 /DB_XREF=EST190389 /CLONE=RLUAM71 /FEA=EST /CNT=15 /TID=Rn.4128.1 /TIER=Stack /STK=12 /UG=Rn.4128 /UG_TITLE=ESTs AA800892 SH3 domain binding glutamic acid-rich protein Sh3bgr 498066 NM_001127682 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation 1372297_at AI234527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234527 /DB_XREF=gi:3828033 /DB_XREF=EST231089 /CLONE=RLUDA82 /FEA=EST /CNT=15 /TID=Rn.33438.1 /TIER=Stack /STK=12 /UG=Rn.33438 /UG_TITLE=ESTs, Highly similar to GLUTATHIONE S-TRANSFERASE 8 (R.norvegicus) AI234527 glutathione S-transferase alpha 4 Gsta4 300850 NM_001106840 0006805 // xenobiotic metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004364 // glutathione transferase activity // inferred from direct assay /// 0004364 // glutathione transferase activity // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0043295 // glutathione binding // inferred from direct assay 1372298_at BE098766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098766 /DB_XREF=gi:8490635 /DB_XREF=UI-R-BJ1-atd-f-06-0-UI.s1 /CLONE=UI-R-BJ1-atd-f-06-0-UI /FEA=EST /CNT=15 /TID=Rn.2459.1 /TIER=Stack /STK=12 /UG=Rn.2459 /UG_TITLE=ESTs, Weakly similar to T25574 hypothetical protein C30H7.2 - Caenorhabditis elegans (C.elegans) BE098766 endoplasmic reticulum protein 44 Erp44 298066 NM_001008317 0006457 // protein folding // inferred from electronic annotation /// 0006457 // protein folding // not recorded /// 0006950 // response to stress // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from electronic annotation /// 0006986 // response to unfolded protein // not recorded /// 0009100 // glycoprotein metabolic process // inferred from electronic annotation /// 0009100 // glycoprotein metabolic process // not recorded /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005793 // ER-Golgi intermediate compartment // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // not recorded 0003756 // protein disulfide isomerase activity // inferred from electronic annotation /// 0003756 // protein disulfide isomerase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372299_at AI013919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013919 /DB_XREF=gi:4133944 /DB_XREF=EST208594 /CLONE=RSPBZ47 /FEA=EST /CNT=27 /TID=Rn.12256.1 /TIER=Stack /STK=12 /UG=Rn.12256 /UG_TITLE=ESTs, Moderately similar to CDNC MOUSE CYCLIN-DEPENDENT KINASE INHIBITOR 1C (M.musculus) AI013919 cyclin-dependent kinase inhibitor 1C Cdkn1c 246060 NM_001033757 /// NM_001033758 /// NM_182735 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0032582 // negative regulation of gene-specific transcription // inferred from electronic annotation /// 0033673 // negative regulation of kinase activity // not recorded /// 0033673 // negative regulation of kinase activity // inferred from electronic annotation /// 0042326 // negative regulation of phosphorylation // not recorded /// 0042326 // negative regulation of phosphorylation // inferred from electronic annotation /// 0042551 // neuron maturation // not recorded /// 0042551 // neuron maturation // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0004861 // cyclin-dependent protein kinase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation 1372300_at BI288838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288838 /DB_XREF=gi:14945808 /DB_XREF=UI-R-DK0-cdf-e-02-0-UI.s1 /CLONE=UI-R-DK0-cdf-e-02-0-UI /FEA=EST /CNT=18 /TID=Rn.41454.1 /TIER=Stack /STK=12 /UG=Rn.41454 /UG_TITLE=ESTs BI288838 1372301_at BI278482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278482 /DB_XREF=gi:14925368 /DB_XREF=UI-R-CZ0-byh-b-10-0-UI.s1 /CLONE=UI-R-CZ0-byh-b-10-0-UI /FEA=EST /CNT=17 /TID=Rn.37157.1 /TIER=Stack /STK=12 /UG=Rn.37157 /UG_TITLE=ESTs, Weakly similar to carboxypeptidase E (Rattus norvegicus) (R.norvegicus) BI278482 AE binding protein 1 Aebp1 305494 NM_001100970 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0004180 // carboxypeptidase activity // not recorded /// 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1372302_at BF284897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284897 /DB_XREF=gi:11215967 /DB_XREF=EST449488 /CLONE=RGIEX54 /FEA=EST /CNT=16 /TID=Rn.18772.1 /TIER=Stack /STK=12 /UG=Rn.18772 /UG_TITLE=ESTs, Weakly similar to C27H6.4.p (Caenorhabditis elegans) (C.elegans) BF284897 family with sequence similarity 82, member A2 Fam82a2 311328 NM_001014046 0006915 // apoptosis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0000922 // spindle pole // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372303_at BE110633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110633 /DB_XREF=gi:8502738 /DB_XREF=UI-R-BJ1-avu-c-03-0-UI.s1 /CLONE=UI-R-BJ1-avu-c-03-0-UI /FEA=EST /CNT=16 /TID=Rn.6664.1 /TIER=Stack /STK=12 /UG=Rn.6664 /UG_TITLE=ESTs, Weakly similar to R07G3.8.p (Caenorhabditis elegans) (C.elegans) BE110633 family with sequence similarity 49, member B Fam49b 299909 NM_001126267 1372304_at BG378042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378042 /DB_XREF=gi:13302514 /DB_XREF=UI-R-CT0-bvn-b-09-0-UI.s1 /CLONE=UI-R-CT0-bvn-b-09-0-UI /FEA=EST /CNT=16 /TID=Rn.17650.1 /TIER=Stack /STK=12 /UG=Rn.17650 /UG_TITLE=ESTs BG378042 COMM domain containing 4 Commd4 363068 NM_001108762 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded 1372305_at AA893634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893634 /DB_XREF=gi:3020513 /DB_XREF=EST197437 /CLONE=RPLAC82 /FEA=EST /CNT=16 /TID=Rn.4257.1 /TIER=Stack /STK=12 /UG=Rn.4257 /UG_TITLE=ESTs, Moderately similar to coatomer protein complex, subunit zeta 1; nonclathrin coat protein zeta1-COP (Mus musculus) (M.musculus) AA893634 coatomer protein complex, subunit zeta 2 Copz2 360611 NM_001108294 0006810 // transport // inferred from electronic annotation 1372306_at BM384018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384018 /DB_XREF=gi:18184071 /DB_XREF=UI-R-DM1-ckb-g-10-0-UI.s1 /CLONE=UI-R-DM1-ckb-g-10-0-UI /FEA=EST /CNT=15 /TID=Rn.14691.1 /TIER=Stack /STK=12 /UG=Rn.14691 /UG_TITLE=ESTs, Weakly similar to hydroxyacyl glutathione hydrolase; glyoxalase II; round spermatid protein RSP29 (Rattus norvegicus) (R.norvegicus) BM384018 ethylmalonic encephalopathy 1 Ethe1 292710 NM_001106234 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0016787 // hydrolase activity // inferred from electronic annotation 1372307_at BI275234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275234 /DB_XREF=gi:14886880 /DB_XREF=UI-R-CX0-bwr-b-07-0-UI.s1 /CLONE=UI-R-CX0-bwr-b-07-0-UI /FEA=EST /CNT=15 /TID=Rn.6554.1 /TIER=Stack /STK=12 /UG=Rn.6554 /UG_TITLE=ESTs BI275234 1372308_at BM386869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386869 /DB_XREF=gi:18186922 /DB_XREF=UI-R-CN1-cjh-b-24-0-UI.s1 /CLONE=UI-R-CN1-cjh-b-24-0-UI /FEA=EST /CNT=15 /TID=Rn.8110.1 /TIER=Stack /STK=12 /UG=Rn.8110 /UG_TITLE=ESTs BM386869 1372309_at BI296558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296558 /DB_XREF=gi:14961099 /DB_XREF=UI-R-CV2-cgs-f-03-0-UI.s1 /CLONE=UI-R-CV2-cgs-f-03-0-UI /FEA=EST /CNT=15 /TID=Rn.30526.1 /TIER=Stack /STK=12 /UG=Rn.30526 /UG_TITLE=ESTs BI296558 1372310_at AI227941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227941 /DB_XREF=gi:4135298 /DB_XREF=EST224636 /CLONE=RBRCN87 /FEA=EST /CNT=15 /TID=Rn.1166.1 /TIER=Stack /STK=12 /UG=Rn.1166 /UG_TITLE=ESTs AI227941 isochorismatase domain containing 1 Isoc1 364879 NM_001014242 0008152 // metabolic process // inferred from electronic annotation 0005777 // peroxisome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation 1372311_at BG380795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380795 /DB_XREF=gi:13305267 /DB_XREF=UI-R-CT0-bub-e-04-0-UI.s1 /CLONE=UI-R-CT0-bub-e-04-0-UI /FEA=EST /CNT=15 /TID=Rn.8100.1 /TIER=Stack /STK=12 /UG=Rn.8100 /UG_TITLE=ESTs BG380795 glucosamine-6-phosphate deaminase 1 Gnpda1 683570 NM_001134995 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006044 // N-acetylglucosamine metabolic process // inferred from electronic annotation 0004342 // glucosamine-6-phosphate deaminase activity // inferred from electronic annotation 1372312_at AI176212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176212 /DB_XREF=gi:4134862 /DB_XREF=EST219793 /CLONE=ROVBO52 /FEA=EST /CNT=15 /TID=Rn.7361.1 /TIER=Stack /STK=12 /UG=Rn.7361 /UG_TITLE=ESTs, Weakly similar to T23D8.3.p (Caenorhabditis elegans) (C.elegans) AI176212 LTV1 homolog (S. cerevisiae) Ltv1 361452 NM_001014157 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // inferred from electronic annotation 0005853 // eukaryotic translation elongation factor 1 complex // inferred from electronic annotation 0003746 // translation elongation factor activity // inferred from electronic annotation 1372313_at BI275972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275972 /DB_XREF=gi:14920421 /DB_XREF=UI-R-CX0-bxi-f-04-0-UI.s1 /CLONE=UI-R-CX0-bxi-f-04-0-UI /FEA=EST /CNT=15 /TID=Rn.19842.1 /TIER=Stack /STK=12 /UG=Rn.19842 /UG_TITLE=ESTs, Moderately similar to T27415 hypothetical protein Y75B8A.16 - Caenorhabditis elegans (C.elegans) BI275972 G protein-coupled receptor 89 Gpr89 362003 NM_001139486 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0051452 // intracellular pH reduction // not recorded 0030660 // Golgi-associated vesicle membrane // not recorded /// 0032580 // Golgi cisterna membrane // not recorded 0004871 // signal transducer activity // not recorded /// 0008308 // voltage-gated anion channel activity // not recorded 1372314_at AI179677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179677 /DB_XREF=gi:3730315 /DB_XREF=EST223402 /CLONE=RSPCK33 /FEA=EST /CNT=15 /TID=Rn.18138.1 /TIER=Stack /STK=12 /UG=Rn.18138 /UG_TITLE=ESTs AI179677 WD repeat domain 26 Wdr26 498301 NM_001109081 0005737 // cytoplasm // not recorded 1372315_at AI716022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716022 /DB_XREF=gi:5033275 /DB_XREF=UI-R-Y0-acd-b-03-0-UI.s1 /CLONE=UI-R-Y0-acd-b-03-0-UI /FEA=EST /CNT=14 /TID=Rn.20340.1 /TIER=Stack /STK=12 /UG=Rn.20340 /UG_TITLE=ESTs AI716022 1372316_at BM384131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384131 /DB_XREF=gi:18184184 /DB_XREF=UI-R-DZ0-cks-l-07-0-UI.s1 /CLONE=UI-R-DZ0-cks-l-07-0-UI /FEA=EST /CNT=14 /TID=Rn.27.1 /TIER=Stack /STK=12 /UG=Rn.27 /UG_TITLE=ESTs BM384131 protein kinase-like protein SgK493 Sgk493 313860 NM_001108007 0016310 // phosphorylation // not recorded /// 0030501 // positive regulation of bone mineralization // not recorded /// 0030501 // positive regulation of bone mineralization // inferred from sequence or structural similarity /// 0030501 // positive regulation of bone mineralization // inferred from electronic annotation /// 0032332 // positive regulation of chondrocyte differentiation // not recorded /// 0032332 // positive regulation of chondrocyte differentiation // inferred from sequence or structural similarity /// 0032332 // positive regulation of chondrocyte differentiation // inferred from electronic annotation /// 0042997 // negative regulation of Golgi to plasma membrane protein transport // not recorded /// 0042997 // negative regulation of Golgi to plasma membrane protein transport // inferred from sequence or structural similarity /// 0042997 // negative regulation of Golgi to plasma membrane protein transport // inferred from electronic annotation /// 0048286 // lung alveolus development // not recorded /// 0048286 // lung alveolus development // inferred from sequence or structural similarity /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048566 // embryonic digestive tract development // not recorded /// 0048566 // embryonic digestive tract development // inferred from sequence or structural similarity /// 0048566 // embryonic digestive tract development // inferred from electronic annotation /// 0060021 // palate development // not recorded /// 0060021 // palate development // inferred from sequence or structural similarity /// 0060021 // palate development // inferred from electronic annotation 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1372317_at AI177867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177867 /DB_XREF=gi:3728505 /DB_XREF=EST221516 /CLONE=RPLCH61 /FEA=EST /CNT=14 /TID=Rn.25098.1 /TIER=Stack /STK=12 /UG=Rn.25098 /UG_TITLE=ESTs, Weakly similar to EPIDERMAL GROWTH FACTOR RECEPTOR SUBSTRATE SUBSTRATE 15 (M.musculus) AI177867 EH-domain containing 1 Ehd1 293692 NM_001011939 0006897 // endocytosis // inferred from electronic annotation /// 0006897 // endocytosis // not recorded /// 0010886 // positive regulation of cholesterol storage // inferred from electronic annotation /// 0016197 // endosome transport // inferred from electronic annotation /// 0016197 // endosome transport // not recorded /// 0034383 // low-density lipoprotein particle clearance // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // inferred from electronic annotation 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from electronic annotation /// 0005811 // lipid particle // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0030139 // endocytic vesicle // not recorded /// 0031095 // platelet dense tubular network membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0055038 // recycling endosome membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1372318_at AI235528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235528 /DB_XREF=gi:3829034 /DB_XREF=EST232090 /CLONE=ROVCT11 /FEA=EST /CNT=14 /TID=Rn.7416.1 /TIER=Stack /STK=12 /UG=Rn.7416 /UG_TITLE=ESTs, Weakly similar to synuclein, gamma (Rattus norvegicus) (R.norvegicus) AI235528 1372319_at BF282811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282811 /DB_XREF=gi:11213881 /DB_XREF=EST447402 /CLONE=RGIDT49 /FEA=EST /CNT=14 /TID=Rn.8221.1 /TIER=Stack /STK=12 /UG=Rn.8221 /UG_TITLE=ESTs, Weakly similar to JC4863 homeobox protein zhx-1 - mouse (M.musculus) BF282811 1372320_at BE103894 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103894 /DB_XREF=gi:8495994 /DB_XREF=UI-R-BX0-arj-b-06-0-UI.s1 /CLONE=UI-R-BX0-arj-b-06-0-UI /FEA=EST /CNT=14 /TID=Rn.7258.1 /TIER=Stack /STK=12 /UG=Rn.7258 /UG_TITLE=ESTs, Highly similar to T08795 hypothetical protein DKFZp586J1822.1 (H.sapiens) BE103894 male-specific lethal 3 homolog (Drosophila) Msl3 317464 NM_001014111 0006333 // chromatin assembly or disassembly // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003682 // chromatin binding // inferred from electronic annotation 1372321_at BE111805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111805 /DB_XREF=gi:8503910 /DB_XREF=UI-R-BJ1-avz-a-04-0-UI.s1 /CLONE=UI-R-BJ1-avz-a-04-0-UI /FEA=EST /CNT=14 /TID=Rn.17352.1 /TIER=Stack /STK=12 /UG=Rn.17352 /UG_TITLE=ESTs, Weakly similar to dHand protein (Rattus norvegicus) (R.norvegicus) BE111805 protein lyl-1-like /// lymphoblastic leukemia derived sequence 1 LOC100365743 /// Lyl1 100365743 /// 304663 NM_001007677 /// XR_085683 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1372322_at BF398016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398016 /DB_XREF=gi:11383001 /DB_XREF=UI-R-BS2-beg-d-01-0-UI.s1 /CLONE=UI-R-BS2-beg-d-01-0-UI /FEA=EST /CNT=14 /TID=Rn.14982.1 /TIER=Stack /STK=12 /UG=Rn.14982 /UG_TITLE=ESTs, Moderately similar to SGT1_MOUSE SGT1 protein homolog (M.musculus) BF398016 similar to Suppressor of S. cerevisiae gcr2 RGD1565023 305671 XM_001055900 1372323_at AI103641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103641 /DB_XREF=gi:3708168 /DB_XREF=EST212930 /CLONE=REMCE60 /FEA=EST /CNT=14 /TID=Rn.12219.1 /TIER=Stack /STK=12 /UG=Rn.12219 /UG_TITLE=ESTs AI103641 sarcosine dehydrogenase Sardh 114123 NM_053664 0006545 // glycine biosynthetic process // traceable author statement /// 0006546 // glycine catabolic process // inferred from electronic annotation /// 0042426 // choline catabolic process // non-traceable author statement /// 0042426 // choline catabolic process // traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0004047 // aminomethyltransferase activity // inferred from electronic annotation /// 0008480 // sarcosine dehydrogenase activity // traceable author statement /// 0008480 // sarcosine dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // non-traceable author statement /// 0050660 // FAD or FADH2 binding // inferred from direct assay 1372324_at AW253391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253391 /DB_XREF=gi:6596982 /DB_XREF=UI-R-BJ0-aen-d-03-0-UI.s1 /CLONE=UI-R-BJ0-aen-d-03-0-UI /FEA=EST /CNT=14 /TID=Rn.17552.1 /TIER=Stack /STK=12 /UG=Rn.17552 /UG_TITLE=ESTs, Moderately similar to TRI3_HUMAN THYROID RECEPTOR INTERACTING PROTEIN 3 (H.sapiens) AW253391 zinc finger, HIT type 3 Znhit3 497975 XM_001081104 /// XM_573169 0004872 // receptor activity // inferred from electronic annotation 1372325_at BI303596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303596 /DB_XREF=gi:14979876 /DB_XREF=UI-R-DQ0-cja-b-12-0-UI.s1 /CLONE=UI-R-DQ0-cja-b-12-0-UI /FEA=EST /CNT=14 /TID=Rn.23983.1 /TIER=Stack /STK=12 /UG=Rn.23983 /UG_TITLE=ESTs, Weakly similar to 1917150A collagen:SUBUNIT=alpha1:ISOTYPE=VIII (R.norvegicus) BI303596 elastin microfibril interfacer 1 Emilin1 298845 NM_001106710 0010811 // positive regulation of cell-substrate adhesion // not recorded /// 0030198 // extracellular matrix organization // not recorded 0005578 // proteinaceous extracellular matrix // not recorded /// 0031012 // extracellular matrix // not recorded 0005515 // protein binding // not recorded /// 0030023 // extracellular matrix constituent conferring elasticity // not recorded /// 0042802 // identical protein binding // not recorded 1372326_at AA901341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901341 /DB_XREF=gi:4233842 /DB_XREF=UI-R-A1-dw-b-04-0-UI.s1 /CLONE=UI-R-A1-dw-b-04-0-UI /FEA=EST /CNT=14 /TID=Rn.3398.1 /TIER=Stack /STK=12 /UG=Rn.3398 /UG_TITLE=ESTs, Highly similar to alpha-2,6-sialyltransferase (M.musculus) AA901341 Solute carrier family 2 (facilitated glucose transporter), member 3 Slc2a3 25551 NM_017102 0006810 // transport // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0015749 // monosaccharide transport // inferred from direct assay /// 0015758 // glucose transport // inferred from direct assay /// 0015758 // glucose transport // not recorded /// 0015758 // glucose transport // traceable author statement /// 0015758 // glucose transport // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0046323 // glucose import // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070837 // dehydroascorbic acid transport // inferred from direct assay /// 0070837 // dehydroascorbic acid transport // not recorded /// 0070837 // dehydroascorbic acid transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0005355 // glucose transmembrane transporter activity // traceable author statement /// 0005355 // glucose transmembrane transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005536 // glucose binding // inferred from direct assay /// 0015145 // monosaccharide transmembrane transporter activity // inferred from direct assay /// 0016936 // galactoside binding // inferred from direct assay /// 0019900 // kinase binding // inferred from physical interaction /// 0022891 // substrate-specific transmembrane transporter activity // inferred from electronic annotation /// 0033222 // xylose binding // inferred from direct assay /// 0033300 // dehydroascorbic acid transporter activity // inferred from direct assay /// 0033300 // dehydroascorbic acid transporter activity // not recorded /// 0033300 // dehydroascorbic acid transporter activity // inferred from electronic annotation /// 0055056 // D-glucose transmembrane transporter activity // inferred from direct assay /// 0055056 // D-glucose transmembrane transporter activity // not recorded /// 0055056 // D-glucose transmembrane transporter activity // inferred from electronic annotation 1372327_at BF552877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552877 /DB_XREF=gi:11662607 /DB_XREF=UI-R-C2-nn-e-12-0-UI.r1 /CLONE=UI-R-C2-nn-e-12-0-UI /FEA=EST /CNT=14 /TID=Rn.3231.1 /TIER=Stack /STK=12 /UG=Rn.3231 /UG_TITLE=ESTs, Highly similar to A56704 regulatory protein Myef-2 - mouse (M.musculus) BF552877 myelin expression factor 2 Myef2 679712 NM_001013205 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005794 // Golgi apparatus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1372328_at BM386079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386079 /DB_XREF=gi:18186132 /DB_XREF=UI-R-DN1-ckg-k-09-0-UI.s1 /CLONE=UI-R-DN1-ckg-k-09-0-UI /FEA=EST /CNT=14 /TID=Rn.16800.1 /TIER=Stack /STK=12 /UG=Rn.16800 /UG_TITLE=ESTs, Highly similar to RIKEN cDNA 1200014P03 (Mus musculus) (M.musculus) BM386079 kinesin light chain 4 Klc4 316226 NM_001009601 0005871 // kinesin complex // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372329_at BM389011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389011 /DB_XREF=gi:18189064 /DB_XREF=UI-R-DZ0-ckn-n-24-0-UI.s1 /CLONE=UI-R-DZ0-ckn-n-24-0-UI /FEA=EST /CNT=14 /TID=Rn.1713.1 /TIER=Stack /STK=12 /UG=Rn.1713 /UG_TITLE=ESTs BM389011 adaptor-related protein complex 1 associated regulatory protein Ap1ar 362037 NM_001191850 /// XM_001076285 /// XM_002726039 /// XM_002726040 /// XM_002729109 /// XM_002729110 /// XM_342338 0030133 // transport vesicle // inferred from electronic annotation /// 0030133 // transport vesicle // not recorded 1372330_at BM391371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391371 /DB_XREF=gi:18191424 /DB_XREF=UI-R-DY0-ckq-h-22-0-UI.s1 /CLONE=UI-R-DY0-ckq-h-22-0-UI /FEA=EST /CNT=14 /TID=Rn.17620.1 /TIER=Stack /STK=12 /UG=Rn.17620 /UG_TITLE=ESTs, Weakly similar to neurodegeneration-associated protein 1 (R.norvegicus) BM391371 goliath LOC652955 652955 NM_001037658 0006915 // apoptosis // inferred from electronic annotation /// 0012501 // programmed cell death // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372331_at BM386033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386033 /DB_XREF=gi:18186086 /DB_XREF=UI-R-DN1-ckf-p-13-0-UI.s1 /CLONE=UI-R-DN1-ckf-p-13-0-UI /FEA=EST /CNT=14 /TID=Rn.1321.1 /TIER=Stack /STK=12 /UG=Rn.1321 /UG_TITLE=ESTs, Moderately similar to A34168 nucleolar phosphoprotein B23.2 - rat (R.norvegicus) BM386033 eukaryotic translation initiation factor 1A, Y-linked Eif1ay 302697 NM_001106963 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation 1372332_at AI170687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170687 /DB_XREF=gi:3710727 /DB_XREF=EST216623 /CLONE=RMUAZ96 /FEA=EST /CNT=14 /TID=Rn.13655.1 /TIER=Stack /STK=12 /UG=Rn.13655 /UG_TITLE=ESTs AI170687 1372333_at BF555033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555033 /DB_XREF=gi:11664763 /DB_XREF=UI-R-E0-cf-h-03-0-UI.r1 /CLONE=UI-R-E0-cf-h-03-0-UI /FEA=EST /CNT=14 /TID=Rn.3243.1 /TIER=Stack /STK=12 /UG=Rn.3243 /UG_TITLE=ESTs, Highly similar to RUXE_HUMAN SMALL NUCLEAR RIBONUCLEOPROTEIN E (M.musculus) BF555033 small nuclear ribonucleoprotein polypeptide E-like /// small nuclear ribonucleoprotein polypeptide E /// small nuclear ribonucleoprotein E-like LOC100365464 /// Snrpe /// Snrpel 100365464 /// 360844 /// 685587 XM_001064438 /// XM_001065908 /// XM_002727145 /// XM_341120 /// XR_085661 0000387 // spliceosomal snRNP assembly // not recorded /// 0008380 // RNA splicing // not recorded 0005654 // nucleoplasm // not recorded /// 0005683 // U7 snRNP // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded 1372334_at AW144821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144821 /DB_XREF=gi:6161684 /DB_XREF=EST291940 /CLONE=RGICJ09 /FEA=EST /CNT=14 /TID=Rn.4285.1 /TIER=Stack /STK=12 /UG=Rn.4285 /UG_TITLE=ESTs AW144821 1372335_at BE114641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114641 /DB_XREF=gi:8506746 /DB_XREF=UI-R-BJ1-awn-e-06-0-UI.s1 /CLONE=UI-R-BJ1-awn-e-06-0-UI /FEA=EST /CNT=14 /TID=Rn.3017.1 /TIER=Stack /STK=12 /UG=Rn.3017 /UG_TITLE=ESTs BE114641 similar to receptor expression enhancing protein 2 LOC682105 682105 NM_001048047 0004872 // receptor activity // inferred from electronic annotation 1372336_at BE115454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115454 /DB_XREF=gi:8507559 /DB_XREF=UI-R-BS1-axw-a-08-0-UI.s1 /CLONE=UI-R-BS1-axw-a-08-0-UI /FEA=EST /CNT=14 /TID=Rn.52985.1 /TIER=Stack /STK=12 /UG=Rn.52985 /UG_TITLE=ESTs BE115454 1372337_at AA800242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800242 /DB_XREF=gi:2863197 /DB_XREF=EST189739 /CLONE=RHEAM85 /FEA=EST /CNT=80 /TID=Rn.34416.2 /TIER=Stack /STK=16 /UG=Rn.34416 /UG_TITLE=ESTs AA800242 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4 LOC100188932 100188932 NM_001134690 /// NM_001134691 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1372338_at AI599079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599079 /DB_XREF=gi:4608127 /DB_XREF=EST250782 /CLONE=REMEB56 /FEA=EST /CNT=14 /TID=Rn.6180.1 /TIER=Stack /STK=12 /UG=Rn.6180 /UG_TITLE=ESTs, Weakly similar to C24H11.6.p (Caenorhabditis elegans) (C.elegans) AI599079 similar to CG9240-PA LOC687395 687395 XM_001073720 /// XM_002726239 0006508 // proteolysis // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0008236 // serine-type peptidase activity // inferred from electronic annotation 1372339_at AA866438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866438 /DB_XREF=gi:4230657 /DB_XREF=UI-R-E0-ch-f-06-0-UI.s1 /CLONE=UI-R-E0-ch-f-06-0-UI /FEA=EST /CNT=31 /TID=Rn.9274.1 /TIER=Stack /STK=7 /UG=Rn.9274 /UG_TITLE=ESTs AA866438 cell division cycle 26 Cdc26 366381 NM_001013240 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070979 // protein K11-linked ubiquitination // not recorded /// 0070979 // protein K11-linked ubiquitination // inferred from sequence or structural similarity /// 0070979 // protein K11-linked ubiquitination // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005680 // anaphase-promoting complex // not recorded /// 0005680 // anaphase-promoting complex // inferred from sequence or structural similarity /// 0005680 // anaphase-promoting complex // inferred from electronic annotation /// 0005829 // cytosol // not recorded 1372340_at BM386355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386355 /DB_XREF=gi:18186408 /DB_XREF=UI-R-CN1-cjf-b-06-0-UI.s1 /CLONE=UI-R-CN1-cjf-b-06-0-UI /FEA=EST /CNT=19 /TID=Rn.1752.1 /TIER=Stack /STK=12 /UG=Rn.1752 /UG_TITLE=ESTs BM386355 methionine adenosyltransferase II, beta Mat2b 683630 NM_001044282 0006556 // S-adenosylmethionine biosynthetic process // not recorded /// 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0045226 // extracellular polysaccharide biosynthetic process // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005739 // mitochondrion // not recorded /// 0048269 // methionine adenosyltransferase complex // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008831 // dTDP-4-dehydrorhamnose reductase activity // inferred from electronic annotation /// 0048270 // methionine adenosyltransferase regulator activity // not recorded 1372341_at AI233213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233213 /DB_XREF=gi:3817093 /DB_XREF=EST229901 /CLONE=RKIDC27 /FEA=EST /CNT=16 /TID=Rn.17305.1 /TIER=Stack /STK=12 /UG=Rn.17305 /UG_TITLE=ESTs AI233213 solute carrier family 25, member 36 Slc25a36 501039 XM_001065705 /// XM_576451 0032355 // response to estradiol stimulus // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1372342_at AI176583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176583 /DB_XREF=gi:3727221 /DB_XREF=EST220171 /CLONE=ROVBU17 /FEA=EST /CNT=16 /TID=Rn.1215.1 /TIER=Stack /STK=12 /UG=Rn.1215 /UG_TITLE=ESTs AI176583 MARVEL domain containing 1 Marveld1 309375 NM_001107590 1372343_at BM384065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384065 /DB_XREF=gi:18184118 /DB_XREF=UI-R-DZ0-cks-i-20-0-UI.s1 /CLONE=UI-R-DZ0-cks-i-20-0-UI /FEA=EST /CNT=16 /TID=Rn.13177.1 /TIER=Stack /STK=12 /UG=Rn.13177 /UG_TITLE=ESTs, Weakly similar to PMC1_MOUSE POLYMYOSITISSCLERODERMA AUTOANTIGEN 1 (AUTOANTIGEN PMSCL 1) (POLYMYOSITISSCLERODERMA AUTOANTIGEN 75 KDA) (PMSCL-75) (P75 POLYMYOSITIS-SCLERODERMA OVERLAP SYNDROME ASSOCIATED AUTOANTIGEN) (M.musculus) BM384065 exosome component 8 Exosc8 295050 NM_001106432 0006396 // RNA processing // inferred from electronic annotation 0000175 // 3'-5'-exoribonuclease activity // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1372344_at AI175760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175760 /DB_XREF=gi:3726398 /DB_XREF=EST219327 /CLONE=ROVBE90 /FEA=EST /CNT=16 /TID=Rn.2852.1 /TIER=Stack /STK=12 /UG=Rn.2852 /UG_TITLE=ESTs, Weakly similar to EF12 MOUSE ELONGATION FACTOR 1-ALPHA 2 (R.norvegicus) AI175760 Hbs1-like (S. cerevisiae) Hbs1l 293408 NM_001011934 0006412 // translation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1372345_at AA894210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894210 /DB_XREF=gi:4132366 /DB_XREF=EST198013 /CLONE=RSPAS86 /FEA=EST /CNT=16 /TID=Rn.17126.1 /TIER=Stack /STK=12 /UG=Rn.17126 /UG_TITLE=ESTs AA894210 1372346_at AI230729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230729 /DB_XREF=gi:3814616 /DB_XREF=EST227424 /CLONE=REMDA52 /FEA=EST /CNT=15 /TID=Rn.15926.1 /TIER=Stack /STK=12 /UG=Rn.15926 /UG_TITLE=ESTs, Weakly similar to RENAL TRANSCRIPTION FACTOR KID-1 (R.norvegicus) AI230729 zinc finger protein 513 Znf513 313913 NM_001012110 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372347_at BI289462 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289462 /DB_XREF=gi:14947058 /DB_XREF=UI-R-DK0-cfh-c-12-0-UI.s1 /CLONE=UI-R-DK0-cfh-c-12-0-UI /FEA=EST /CNT=15 /TID=Rn.18885.1 /TIER=Stack /STK=12 /UG=Rn.18885 /UG_TITLE=ESTs BI289462 1372348_at AI104502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104502 /DB_XREF=gi:3708847 /DB_XREF=EST213791 /CLONE=RHECE34 /FEA=EST /CNT=15 /TID=Rn.22456.1 /TIER=Stack /STK=12 /UG=Rn.22456 /UG_TITLE=ESTs AI104502 AP2 associated kinase 1 Aak1 500244 NM_001173450 /// XM_001070331 /// XM_575594 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005905 // coated pit // inferred from electronic annotation /// 0071439 // clathrin complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1372349_at AI703543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI703543 /DB_XREF=gi:4991443 /DB_XREF=UI-R-AC0-yk-e-01-0-UI.s1 /CLONE=UI-R-AC0-yk-e-01-0-UI /FEA=EST /CNT=15 /TID=Rn.17090.1 /TIER=Stack /STK=12 /UG=Rn.17090 /UG_TITLE=ESTs, Moderately similar to T34551 hypothetical protein DKFZp434G1735.1 (H.sapiens) AI703543 HAUS augmin-like complex, subunit 7 Haus7 293844 NM_001110488 0051225 // spindle assembly // not recorded /// 0051297 // centrosome organization // not recorded 0070652 // HAUS complex // not recorded 0005515 // protein binding // not recorded /// 0031996 // thioesterase binding // not recorded 1372350_at BI297676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297676 /DB_XREF=gi:14973956 /DB_XREF=UI-R-CV2-cgz-a-10-0-UI.s1 /CLONE=UI-R-CV2-cgz-a-10-0-UI /FEA=EST /CNT=15 /TID=Rn.19830.1 /TIER=Stack /STK=12 /UG=Rn.19830 /UG_TITLE=ESTs, Weakly similar to ATP-dependent RNA helicase (Caenorhabditis elegans) (C.elegans) BI297676 suppressor of var1, 3-like 1 (S. cerevisiae) Supv3l1 294385 NM_001012462 0032508 // DNA duplex unwinding // not recorded /// 0032508 // DNA duplex unwinding // inferred from sequence or structural similarity /// 0032508 // DNA duplex unwinding // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // not recorded /// 0005759 // mitochondrial matrix // inferred from sequence or structural similarity /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003678 // DNA helicase activity // not recorded /// 0003678 // DNA helicase activity // inferred from sequence or structural similarity /// 0003678 // DNA helicase activity // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1372351_at AI229448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229448 /DB_XREF=gi:3813335 /DB_XREF=EST226143 /CLONE=REMCG48 /FEA=EST /CNT=15 /TID=Rn.9365.1 /TIER=Stack /STK=12 /UG=Rn.9365 /UG_TITLE=ESTs AI229448 bromodomain containing 4 Brd4 362844 NM_001100903 0006468 // protein phosphorylation // not recorded /// 0043388 // positive regulation of DNA binding // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded 1372352_at AI170666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170666 /DB_XREF=gi:3710706 /DB_XREF=EST216602 /CLONE=RMUAZ66 /FEA=EST /CNT=15 /TID=Rn.12213.1 /TIER=Stack /STK=12 /UG=Rn.12213 /UG_TITLE=ESTs, Highly similar to ARGR_HUMAN ARGININE-RICH PROTEI (H.sapiens) AI170666 mesencephalic astrocyte-derived neurotrophic factor Manf 315989 NM_001108183 0006986 // response to unfolded protein // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0008083 // growth factor activity // inferred from electronic annotation 1372353_at BE096387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096387 /DB_XREF=gi:8487318 /DB_XREF=UI-R-BU0-apf-e-03-0-UI.s1 /CLONE=UI-R-BU0-apf-e-03-0-UI /FEA=EST /CNT=15 /TID=Rn.24876.1 /TIER=Stack /STK=12 /UG=Rn.24876 /UG_TITLE=ESTs BE096387 A kinase (PRKA) anchor protein 17A Akap17a 288526 NM_001127246 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1372354_at BM389898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389898 /DB_XREF=gi:18189951 /DB_XREF=UI-R-CN1-cji-h-18-0-UI.s1 /CLONE=UI-R-CN1-cji-h-18-0-UI /FEA=EST /CNT=14 /TID=Rn.6369.1 /TIER=Stack /STK=12 /UG=Rn.6369 /UG_TITLE=ESTs BM389898 dual specificity phosphatase 16 Dusp16 297682 NM_001106624 0000188 // inactivation of MAPK activity // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // not recorded /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation 1372355_at BE109242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109242 /DB_XREF=gi:8501347 /DB_XREF=UI-R-BS1-azd-e-09-0-UI.s1 /CLONE=UI-R-BS1-azd-e-09-0-UI /FEA=EST /CNT=14 /TID=Rn.24443.1 /TIER=Stack /STK=12 /UG=Rn.24443 /UG_TITLE=ESTs BE109242 1372356_at BI285307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285307 /DB_XREF=gi:14938809 /DB_XREF=UI-R-DB0-byy-e-08-0-UI.s1 /CLONE=UI-R-DB0-byy-e-08-0-UI /FEA=EST /CNT=14 /TID=Rn.36288.1 /TIER=Stack /STK=12 /UG=Rn.36288 /UG_TITLE=ESTs BI285307 ubiquitin specific peptidase 54 Usp54 408223 NM_001008863 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372357_at BI281833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281833 /DB_XREF=gi:14931979 /DB_XREF=UI-R-CU0s-cbt-b-01-0-UI.s1 /CLONE=UI-R-CU0s-cbt-b-01-0-UI /FEA=EST /CNT=14 /TID=Rn.1185.1 /TIER=Stack /STK=12 /UG=Rn.1185 /UG_TITLE=ESTs BI281833 1372358_at AI012613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012613 /DB_XREF=gi:4133672 /DB_XREF=EST207064 /CLONE=RPLAZ54 /FEA=EST /CNT=14 /TID=Rn.19826.1 /TIER=Stack /STK=12 /UG=Rn.19826 /UG_TITLE=ESTs AI012613 similar to IQ motif and Sec7 domain 1 LOC686590 686590 XM_001073009 0032012 // regulation of ARF protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005086 // ARF guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1372359_at BI291423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291423 /DB_XREF=gi:14950947 /DB_XREF=UI-R-CV2-cgq-b-01-0-UI.s1 /CLONE=UI-R-CV2-cgq-b-01-0-UI /FEA=EST /CNT=14 /TID=Rn.22231.1 /TIER=Stack /STK=12 /UG=Rn.22231 /UG_TITLE=ESTs BI291423 dual specificity phosphatase 26 (putative) Dusp26 306527 NM_001012352 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1372360_at AA817862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817862 /DB_XREF=gi:4198386 /DB_XREF=UI-R-A0-ae-h-08-0-UI.s1 /CLONE=UI-R-A0-ae-h-08-0-UI /FEA=EST /CNT=14 /TID=Rn.1139.1 /TIER=Stack /STK=12 /UG=Rn.1139 /UG_TITLE=ESTs AA817862 abl-interactor 1 Abi1 79249 NM_024397 0001756 // somitogenesis // not recorded /// 0001756 // somitogenesis // inferred from electronic annotation /// 0006928 // cellular component movement // not recorded /// 0009987 // cellular process // not recorded /// 0009987 // cellular process // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0042327 // positive regulation of phosphorylation // not recorded /// 0061098 // positive regulation of protein tyrosine kinase activity // not recorded 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030175 // filopodium // inferred from electronic annotation /// 0030175 // filopodium // not recorded /// 0030426 // growth cone // inferred from electronic annotation /// 0031252 // cell leading edge // not recorded /// 0031252 // cell leading edge // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030296 // protein tyrosine kinase activator activity // not recorded /// 0030296 // protein tyrosine kinase activator activity // inferred from electronic annotation 1372361_at AW529931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529931 /DB_XREF=gi:7172345 /DB_XREF=UI-R-BO1-ajq-h-08-0-UI.s1 /CLONE=UI-R-BO1-ajq-h-08-0-UI /FEA=EST /CNT=13 /TID=Rn.38478.1 /TIER=Stack /STK=12 /UG=Rn.38478 /UG_TITLE=ESTs AW529931 coiled-coil domain containing 22 Ccdc22 317381 NM_001135837 1372362_at BE329241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329241 /DB_XREF=gi:9203017 /DB_XREF=hq38g07.x1 /CLONE=IMAGE:3121692 /FEA=EST /CNT=13 /TID=Rn.2937.1 /TIER=Stack /STK=12 /UG=Rn.2937 /UG_TITLE=ESTs, Weakly similar to GAL1_MOUSE GALACTOKINASE (GALACTOSE KINASE) (M.musculus) BE329241 galactokinase 2 Galk2 296117 NM_001013919 0006012 // galactose metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0046835 // carbohydrate phosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004335 // galactokinase activity // inferred from electronic annotation /// 0004335 // galactokinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0033858 // N-acetylgalactosamine kinase activity // inferred from electronic annotation 1372363_at BF404414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404414 /DB_XREF=gi:11392389 /DB_XREF=UI-R-CA1-bif-a-04-0-UI.s1 /CLONE=UI-R-CA1-bif-a-04-0-UI /FEA=EST /CNT=13 /TID=Rn.15027.1 /TIER=Stack /STK=12 /UG=Rn.15027 /UG_TITLE=ESTs, Highly similar to S55370 RNA polymerase II chain hRPB17 (H.sapiens) BF404414 polymerase (RNA) II (DNA directed) polypeptide H Polr2h 498109 NM_001134789 0006350 // transcription // inferred from electronic annotation 1372364_a_at AA894101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894101 /DB_XREF=gi:3020980 /DB_XREF=EST197904 /CLONE=RSPAQ79 /FEA=EST /CNT=12 /TID=Rn.1273.2 /TIER=Stack /STK=7 /UG=Rn.1273 /UG_TITLE=ESTs, Moderately similar to PNAD MOUSE PROTEIN N-TERMINAL ASPARAGINE AMIDOHYDROLASE (M.musculus) AA894101 N-terminal asparagine amidase Ntan1 360462 NM_001025124 0007613 // memory // not recorded /// 0008152 // metabolic process // not recorded /// 0008344 // adult locomotory behavior // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0008418 // protein N-terminal asparagine amidohydrolase activity // not recorded 1372365_at BM392293 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392293 /DB_XREF=gi:18192346 /DB_XREF=UI-R-DO1-ckp-b-08-0-UI.s1 /CLONE=UI-R-DO1-ckp-b-08-0-UI /FEA=EST /CNT=13 /TID=Rn.34193.1 /TIER=Stack /STK=12 /UG=Rn.34193 /UG_TITLE=ESTs BM392293 Ras and Rab interactor 2 Rin2 311494 NM_001107786 0007165 // signal transduction // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1372366_at BI285597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285597 /DB_XREF=gi:14939415 /DB_XREF=UI-R-CW0-bvv-a-10-0-UI.s2 /CLONE=UI-R-CW0-bvv-a-10-0-UI /FEA=EST /CNT=13 /TID=Rn.6629.1 /TIER=Stack /STK=12 /UG=Rn.6629 /UG_TITLE=ESTs, Highly similar to TI60_HUMAN 60 KDA TAT INTERACTIVE PROTEIN (H.sapiens) BI285597 K(lysine) acetyltransferase 5 Kat5 192218 NM_001005872 0006302 // double-strand break repair // not recorded /// 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006978 // DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator // not recorded /// 0006978 // DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator // inferred from sequence or structural similarity /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016573 // histone acetylation // inferred from mutant phenotype /// 0016573 // histone acetylation // not recorded /// 0032703 // negative regulation of interleukin-2 production // not recorded /// 0043967 // histone H4 acetylation // non-traceable author statement /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0000123 // histone acetyltransferase complex // traceable author statement /// 0000785 // chromatin // inferred from direct assay /// 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0032777 // Piccolo NuA4 histone acetyltransferase complex // not recorded /// 0032777 // Piccolo NuA4 histone acetyltransferase complex // inferred from sequence or structural similarity /// 0035267 // NuA4 histone acetyltransferase complex // not recorded /// 0035267 // NuA4 histone acetyltransferase complex // inferred from sequence or structural similarity /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003682 // chromatin binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0003713 // transcription coactivator activity // inferred from sequence or structural similarity /// 0004402 // histone acetyltransferase activity // not recorded /// 0004402 // histone acetyltransferase activity // inferred from sequence or structural similarity /// 0004402 // histone acetyltransferase activity // non-traceable author statement /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // inferred from direct assay /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070491 // transcription repressor binding // not recorded 1372367_at BF414035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414035 /DB_XREF=gi:11402024 /DB_XREF=UI-R-BJ2-bol-f-06-0-UI.s1 /CLONE=UI-R-BJ2-bol-f-06-0-UI /FEA=EST /CNT=13 /TID=Rn.16508.1 /TIER=Stack /STK=12 /UG=Rn.16508 /UG_TITLE=ESTs BF414035 0006350 // transcription // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1372368_at AI230431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230431 /DB_XREF=gi:3814318 /DB_XREF=EST227126 /CLONE=REMCW43 /FEA=EST /CNT=13 /TID=Rn.1400.1 /TIER=Stack /STK=12 /UG=Rn.1400 /UG_TITLE=ESTs AI230431 1372369_at AI172075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172075 /DB_XREF=gi:3712115 /DB_XREF=EST218070 /CLONE=RMUBU59 /FEA=EST /CNT=13 /TID=Rn.1105.1 /TIER=Stack /STK=12 /UG=Rn.1105 /UG_TITLE=ESTs AI172075 transmembrane protein 109 Tmem109 361732 NM_001007736 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005640 // nuclear outer membrane // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0033017 // sarcoplasmic reticulum membrane // inferred from electronic annotation 1372370_at AI233741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233741 /DB_XREF=gi:3817621 /DB_XREF=EST230429 /CLONE=RKIDJ51 /FEA=EST /CNT=13 /TID=Rn.20060.1 /TIER=Stack /STK=12 /UG=Rn.20060 /UG_TITLE=ESTs AI233741 RNA pseudouridylate synthase domain containing 4 Rpusd4 315550 NM_001025284 0001522 // pseudouridine synthesis // inferred from electronic annotation /// 0009451 // RNA modification // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0009982 // pseudouridine synthase activity // inferred from electronic annotation 1372371_at BI303031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303031 /DB_XREF=gi:14979311 /DB_XREF=UI-R-DO0-ciy-h-10-0-UI.s1 /CLONE=UI-R-DO0-ciy-h-10-0-UI /FEA=EST /CNT=13 /TID=Rn.11680.1 /TIER=Stack /STK=12 /UG=Rn.11680 /UG_TITLE=ESTs BI303031 1372372_at BG372437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372437 /DB_XREF=gi:13268974 /DB_XREF=UI-R-CV1-bsc-g-03-0-UI.s1 /CLONE=UI-R-CV1-bsc-g-03-0-UI /FEA=EST /CNT=13 /TID=Rn.12364.1 /TIER=Stack /STK=12 /UG=Rn.12364 /UG_TITLE=ESTs BG372437 carboxymethylenebutenolidase homolog (Pseudomonas) Cmbl 310201 NM_001008770 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1372373_at AI713206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI713206 /DB_XREF=gi:5017006 /DB_XREF=UI-R-Y0-aaz-d-12-0-UI.s1 /CLONE=UI-R-Y0-aaz-d-12-0-UI /FEA=EST /CNT=13 /TID=Rn.15141.1 /TIER=Stack /STK=12 /UG=Rn.15141 /UG_TITLE=ESTs AI713206 WD repeat domain 13 Wdr13 317370 NM_001108247 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 1372374_at BM383006 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383006 /DB_XREF=gi:18183059 /DB_XREF=UI-R-DS0-cje-e-01-0-UI.s1 /CLONE=UI-R-DS0-cje-e-01-0-UI /FEA=EST /CNT=13 /TID=Rn.6854.1 /TIER=Stack /STK=12 /UG=Rn.6854 /UG_TITLE=ESTs, Weakly similar to A Chain A, Crystal Structure Of S-Glutathiolated Carbonic Anhydrase Iii (R.norvegicus) BM383006 carbonic anhydrase 1 Car1 310218 NM_001107660 0006730 // one-carbon metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004089 // carbonate dehydratase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372375_at BF395615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395615 /DB_XREF=gi:11380585 /DB_XREF=UI-R-CM0-bjp-b-03-0-UI.s1 /CLONE=UI-R-CM0-bjp-b-03-0-UI /FEA=EST /CNT=13 /TID=Rn.8130.1 /TIER=Stack /STK=12 /UG=Rn.8130 /UG_TITLE=ESTs BF395615 ATG16 autophagy related 16-like 1 (S. cerevisiae) Atg16l1 363278 NM_001108809 0005776 // autophagic vacuole // not recorded 0005515 // protein binding // not recorded 1372376_at BF408879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408879 /DB_XREF=gi:11396854 /DB_XREF=UI-R-BS2-bet-d-11-0-UI.s1 /CLONE=UI-R-BS2-bet-d-11-0-UI /FEA=EST /CNT=13 /TID=Rn.39298.1 /TIER=Stack /STK=12 /UG=Rn.39298 /UG_TITLE=ESTs BF408879 SET domain containing 2 Setd2 316013 NM_001108189 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0010452 // histone H3-K36 methylation // not recorded /// 0018023 // peptidyl-lysine trimethylation // not recorded /// 0051789 // response to protein stimulus // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005694 // chromosome // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0046914 // transition metal ion binding // inferred from electronic annotation 1372377_at BM389310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389310 /DB_XREF=gi:18189363 /DB_XREF=UI-R-DZ0-cko-j-16-0-UI.s1 /CLONE=UI-R-DZ0-cko-j-16-0-UI /FEA=EST /CNT=13 /TID=Rn.18415.1 /TIER=Stack /STK=12 /UG=Rn.18415 /UG_TITLE=ESTs, Weakly similar to DEAD BOX PROTEIN 4 (R.norvegicus) BM389310 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 Ddx41 314336 NM_001108046 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372378_at BE111729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111729 /DB_XREF=gi:8503834 /DB_XREF=UI-R-BJ1-avx-b-04-0-UI.s1 /CLONE=UI-R-BJ1-avx-b-04-0-UI /FEA=EST /CNT=13 /TID=Rn.2940.1 /TIER=Stack /STK=12 /UG=Rn.2940 /UG_TITLE=ESTs BE111729 DIS3 mitotic control homolog (S. cerevisiae)-like 2 Dis3l2 367307 NM_001109007 /// NM_001172159 0003723 // RNA binding // inferred from electronic annotation /// 0004540 // ribonuclease activity // inferred from electronic annotation 1372379_at AI177706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177706 /DB_XREF=gi:3728344 /DB_XREF=EST221348 /CLONE=RPLCE82 /FEA=EST /CNT=13 /TID=Rn.20397.1 /TIER=Stack /STK=12 /UG=Rn.20397 /UG_TITLE=ESTs AI177706 1372380_at AI231308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231308 /DB_XREF=gi:3815188 /DB_XREF=EST227996 /CLONE=REMDI42 /FEA=EST /CNT=13 /TID=Rn.8565.1 /TIER=Stack /STK=12 /UG=Rn.8565 /UG_TITLE=ESTs, Highly similar to JC6127 RNA-binding protein type 1 (H.sapiens) AI231308 similar to RNA binding protein gene with multiple splicing RGD1561067 498642 XM_001059526 /// XM_573923 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1372381_at BM383457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383457 /DB_XREF=gi:18183510 /DB_XREF=UI-R-DM1-ckb-n-18-0-UI.s1 /CLONE=UI-R-DM1-ckb-n-18-0-UI /FEA=EST /CNT=13 /TID=Rn.16382.1 /TIER=Stack /STK=12 /UG=Rn.16382 /UG_TITLE=ESTs BM383457 1372382_at AW527165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527165 /DB_XREF=gi:7169579 /DB_XREF=UI-R-BO1-ajm-c-06-0-UI.s1 /CLONE=UI-R-BO1-ajm-c-06-0-UI /FEA=EST /CNT=13 /TID=Rn.40485.1 /TIER=Stack /STK=12 /UG=Rn.40485 /UG_TITLE=ESTs AW527165 1372383_at AW435429 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435429 /DB_XREF=gi:6966736 /DB_XREF=UI-R-BJ0p-afu-d-05-0-UI.s1 /CLONE=UI-R-BJ0p-afu-d-05-0-UI /FEA=EST /CNT=13 /TID=Rn.16355.1 /TIER=Stack /STK=12 /UG=Rn.16355 /UG_TITLE=ESTs AW435429 G-protein signaling modulator 1 (AGS3-like, C. elegans) Gpsm1 246254 NM_001145469 /// NM_144745 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0030154 // cell differentiation // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction 1372384_at BM383306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383306 /DB_XREF=gi:18183359 /DB_XREF=UI-R-DK0-cfm-c-04-0-UI.s2 /CLONE=UI-R-DK0-cfm-c-04-0-UI /FEA=EST /CNT=13 /TID=Rn.16721.1 /TIER=Stack /STK=12 /UG=Rn.16721 /UG_TITLE=ESTs BM383306 zinc finger protein 609 Znf609 363412 NM_001173371 /// XM_001076726 /// XM_343738 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1372385_at AA957292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957292 /DB_XREF=gi:4277182 /DB_XREF=UI-R-E1-fq-h-06-0-UI.s1 /CLONE=UI-R-E1-fq-h-06-0-UI /FEA=EST /CNT=13 /TID=Rn.9237.1 /TIER=Stack /STK=12 /UG=Rn.9237 /UG_TITLE=ESTs AA957292 hypothetical protein LOC100360845 LOC100360845 100360845 XM_002728821 1372386_at AW530777 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530777 /DB_XREF=gi:7173191 /DB_XREF=UI-R-C4-alb-d-04-0-UI.s1 /CLONE=UI-R-C4-alb-d-04-0-UI /FEA=EST /CNT=13 /TID=Rn.9367.1 /TIER=Stack /STK=12 /UG=Rn.9367 /UG_TITLE=ESTs AW530777 1372387_at BF416240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416240 /DB_XREF=gi:11404229 /DB_XREF=UI-R-CA0-bkr-b-07-0-UI.s1 /CLONE=UI-R-CA0-bkr-b-07-0-UI /FEA=EST /CNT=13 /TID=Rn.26559.1 /TIER=Stack /STK=12 /UG=Rn.26559 /UG_TITLE=ESTs BF416240 hypothetical LOC300751 RGD1311874 300751 NM_001106825 1372388_at AI227930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227930 /DB_XREF=gi:3811817 /DB_XREF=EST224625 /CLONE=RBRCN72 /FEA=EST /CNT=13 /TID=Rn.40313.1 /TIER=Stack /STK=12 /UG=Rn.40313 /UG_TITLE=ESTs, Weakly similar to T21810 hypothetical protein F35G12.4b - Caenorhabditis elegans (C.elegans) AI227930 WD repeat domain 48 Wdr48 363164 NM_001135895 0016579 // protein deubiquitination // not recorded 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1372389_at BF420059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420059 /DB_XREF=gi:11408048 /DB_XREF=UI-R-BJ2-bpm-e-01-0-UI.s1 /CLONE=UI-R-BJ2-bpm-e-01-0-UI /FEA=EST /CNT=13 /TID=Rn.4298.1 /TIER=Stack /STK=12 /UG=Rn.4298 /UG_TITLE=ESTs BF420059 immediate early response 2 Ier2 494344 NM_001009541 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1372390_at AI710604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI710604 /DB_XREF=gi:5000380 /DB_XREF=UI-R-AG1-aam-b-02-0-UI.s1 /CLONE=UI-R-AG1-aam-b-02-0-UI /FEA=EST /CNT=13 /TID=Rn.22874.1 /TIER=Stack /STK=12 /UG=Rn.22874 /UG_TITLE=ESTs AI710604 rCG32052-like LOC100363005 100363005 XM_002725510 /// XM_002728663 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1372391_at AI598937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598937 /DB_XREF=gi:4607985 /DB_XREF=EST250640 /CLONE=REMDY25 /FEA=EST /CNT=13 /TID=Rn.53957.1 /TIER=Stack /STK=12 /UG=Rn.53957 /UG_TITLE=ESTs, Weakly similar to RL7 RAT 60S RIBOSOMAL PROTEIN L7 (R.norvegicus) AI598937 1372392_at AI599125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599125 /DB_XREF=gi:4608173 /DB_XREF=EST250828 /CLONE=REMEB83 /FEA=EST /CNT=13 /TID=Rn.15997.1 /TIER=Stack /STK=12 /UG=Rn.15997 /UG_TITLE=ESTs AI599125 1372393_at AI409506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409506 /DB_XREF=gi:4253010 /DB_XREF=EST237798 /CLONE=ROVEN41 /FEA=EST /CNT=13 /TID=Rn.6923.1 /TIER=Stack /STK=12 /UG=Rn.6923 /UG_TITLE=ESTs, Highly similar to T42669 hypothetical protein DKFZp434C1717.1 (H.sapiens) AI409506 F-box only protein 18 Fbxo18 291293 NM_001106119 0006281 // DNA repair // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1372394_at AI175474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175474 /DB_XREF=gi:3726112 /DB_XREF=EST219024 /CLONE=RMUCN90 /FEA=EST /CNT=13 /TID=Rn.36797.1 /TIER=Stack /STK=12 /UG=Rn.36797 /UG_TITLE=ESTs AI175474 HECT domain containing 1 Hectd1 362736 XM_001078686 /// XM_343060 0001843 // neural tube closure // not recorded /// 0006464 // protein modification process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372395_at AA850978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850978 /DB_XREF=gi:2938518 /DB_XREF=EST193746 /CLONE=ROVAP15 /FEA=EST /CNT=13 /TID=Rn.2039.1 /TIER=Stack /STK=12 /UG=Rn.2039 /UG_TITLE=ESTs AA850978 Membrane-associated ring finger (C3HC4) 6 March6 294862 XM_001065952 /// XM_215517 0008270 // zinc ion binding // inferred from electronic annotation 1372396_at BE113316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113316 /DB_XREF=gi:8505386 /DB_XREF=UI-R-BJ1-awd-f-03-0-UI.s1 /CLONE=UI-R-BJ1-awd-f-03-0-UI /FEA=EST /CNT=13 /TID=Rn.21057.1 /TIER=Stack /STK=12 /UG=Rn.21057 /UG_TITLE=ESTs BE113316 similar to 2310047B19Rik protein RGD1308026 363029 NM_001108755 1372397_at BE349744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE349744 /DB_XREF=gi:9261597 /DB_XREF=hq42d11.x1 /CLONE=IMAGE:3122037 /FEA=EST /CNT=13 /TID=Rn.37945.2 /TIER=Stack /STK=12 /UG=Rn.37945 /LL=24883 /UG_GENE=Wt1 /UG_TITLE=Wilms tumor 1 BE349744 TIP41, TOR signaling pathway regulator-like (S. cerevisiae) Tiprl 360869 NM_001109667 0000077 // DNA damage checkpoint // inferred from electronic annotation /// 0000077 // DNA damage checkpoint // not recorded /// 0034048 // negative regulation of protein phosphatase type 2A activity // inferred from electronic annotation /// 0034048 // negative regulation of protein phosphatase type 2A activity // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372398_at BG373314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373314 /DB_XREF=gi:13269851 /DB_XREF=UI-R-CV1-brx-c-09-0-UI.s1 /CLONE=UI-R-CV1-brx-c-09-0-UI /FEA=EST /CNT=13 /TID=Rn.23171.1 /TIER=Stack /STK=12 /UG=Rn.23171 /UG_TITLE=ESTs BG373314 potassium channel tetramerisation domain containing 15 Kctd15 499129 NM_001109141 0006813 // potassium ion transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1372399_at BM392127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392127 /DB_XREF=gi:18192180 /DB_XREF=UI-R-DO1-ckp-a-06-0-UI.s1 /CLONE=UI-R-DO1-ckp-a-06-0-UI /FEA=EST /CNT=13 /TID=Rn.8119.1 /TIER=Stack /STK=12 /UG=Rn.8119 /UG_TITLE=ESTs, Highly similar to T08747 hypothetical protein DKFZp586B0519.1 (H.sapiens) BM392127 cofactor of BRCA1 Cobra1 311796 NM_001107817 0016481 // negative regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372400_at AI180403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180403 /DB_XREF=gi:4135241 /DB_XREF=EST224148 /CLONE=RSPCX26 /FEA=EST /CNT=13 /TID=Rn.1987.1 /TIER=Stack /STK=12 /UG=Rn.1987 /UG_TITLE=ESTs, Highly similar to cullin 4A (Homo sapiens) (H.sapiens) AI180403 Similar to cullin 4A RGD1563853 361181 NM_001127301 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0045750 // positive regulation of S phase of mitotic cell cycle // not recorded /// 0051246 // regulation of protein metabolic process // not recorded /// 0071445 // cellular response to protein stimulus // not recorded 0019005 // SCF ubiquitin ligase complex // inferred from electronic annotation /// 0031461 // cullin-RING ubiquitin ligase complex // inferred from electronic annotation /// 0031464 // Cul4A-RING ubiquitin ligase complex // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation 1372401_at AA859401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859401 /DB_XREF=gi:4229748 /DB_XREF=UI-R-E0-bt-d-01-0-UI.s1 /CLONE=UI-R-E0-bt-d-01-0-UI /FEA=EST /CNT=23 /TID=Rn.17006.1 /TIER=Stack /STK=12 /UG=Rn.17006 /UG_TITLE=ESTs, Highly similar to JC7321 N-acetylneuraminic acid 9-phosphate synthase (EC 4.1.3.-) - mouse (M.musculus) AA859401 N-acetylneuraminic acid synthase Nans 298071 NM_001106655 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0016051 // carbohydrate biosynthetic process // inferred from electronic annotation 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0047444 // N-acylneuraminate-9-phosphate synthase activity // inferred from electronic annotation /// 0047444 // N-acylneuraminate-9-phosphate synthase activity // not recorded 1372402_at AW435213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435213 /DB_XREF=gi:6966520 /DB_XREF=UI-R-BJ0p-afj-g-11-0-UI.s1 /CLONE=UI-R-BJ0p-afj-g-11-0-UI /FEA=EST /CNT=23 /TID=Rn.17006.1 /TIER=Stack /STK=7 /UG=Rn.17006 /UG_TITLE=ESTs, Highly similar to JC7321 N-acetylneuraminic acid 9-phosphate synthase (EC 4.1.3.-) - mouse (M.musculus) AW435213 N-acetylneuraminic acid synthase Nans 298071 NM_001106655 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0016051 // carbohydrate biosynthetic process // inferred from electronic annotation 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0047444 // N-acylneuraminate-9-phosphate synthase activity // inferred from electronic annotation /// 0047444 // N-acylneuraminate-9-phosphate synthase activity // not recorded 1372403_at BI276339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276339 /DB_XREF=gi:14921133 /DB_XREF=UI-R-CW0-bwp-a-05-0-UI.s1 /CLONE=UI-R-CW0-bwp-a-05-0-UI /FEA=EST /CNT=16 /TID=Rn.14679.1 /TIER=Stack /STK=12 /UG=Rn.14679 /UG_TITLE=ESTs, Weakly similar to T08700 hypothetical protein DKFZp564G013.1 (H.sapiens) BI276339 similar to Nuclear membrane binding protein NUCLING RGD1560011 315732 NM_001195564 /// XR_085898 /// XR_086324 1372404_at AI010476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010476 /DB_XREF=gi:3224308 /DB_XREF=EST204927 /CLONE=RLUBZ92 /FEA=EST /CNT=15 /TID=Rn.2863.1 /TIER=Stack /STK=12 /UG=Rn.2863 /UG_TITLE=ESTs, Weakly similar to PC4266 GTP-binding protein rhoA - rat (fragment) (R.norvegicus) AI010476 ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) Rac2 366957 NM_001008384 0006184 // GTP catabolic process // not recorded /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006935 // chemotaxis // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0030031 // cell projection assembly // inferred from electronic annotation /// 0030031 // cell projection assembly // not recorded /// 0030036 // actin cytoskeleton organization // inferred from direct assay /// 0030036 // actin cytoskeleton organization // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0045453 // bone resorption // inferred from direct assay /// 0060263 // regulation of respiratory burst // inferred from electronic annotation /// 0060263 // regulation of respiratory burst // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1372405_at BE107128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107128 /DB_XREF=gi:8499233 /DB_XREF=UI-R-BS1-ayq-b-09-0-UI.s1 /CLONE=UI-R-BS1-ayq-b-09-0-UI /FEA=EST /CNT=14 /TID=Rn.7032.1 /TIER=Stack /STK=12 /UG=Rn.7032 /UG_TITLE=ESTs BE107128 leucine rich repeat containing 68 Lrrc68 308398 NM_001107482 1372406_at BM383428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383428 /DB_XREF=gi:18183481 /DB_XREF=UI-R-DM1-ckb-h-18-0-UI.s1 /CLONE=UI-R-DM1-ckb-h-18-0-UI /FEA=EST /CNT=14 /TID=Rn.12916.1 /TIER=Stack /STK=12 /UG=Rn.12916 /UG_TITLE=ESTs, Moderately similar to S22804 replication licensing factor MCM3 - mouse (M.musculus) BM383428 minichromosome maintenance complex component 3 Mcm3 316273 NM_001191805 /// XM_001070728 /// XM_236988 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded /// 0006270 // DNA-dependent DNA replication initiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1372407_at BI289527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289527 /DB_XREF=gi:14947191 /DB_XREF=UI-R-DK0-cff-b-04-0-UI.s1 /CLONE=UI-R-DK0-cff-b-04-0-UI /FEA=EST /CNT=13 /TID=Rn.22474.1 /TIER=Stack /STK=12 /UG=Rn.22474 /UG_TITLE=ESTs, Weakly similar to TMOD MOUSE TROPOMODULIN (M.musculus) BI289527 tropomodulin 4 Tmod4 295261 NM_001106449 0005856 // cytoskeleton // inferred from electronic annotation 0005523 // tropomyosin binding // inferred from electronic annotation 1372408_at BI278620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278620 /DB_XREF=gi:14925647 /DB_XREF=UI-R-CW0-bxn-h-02-0-UI.s1 /CLONE=UI-R-CW0-bxn-h-02-0-UI /FEA=EST /CNT=13 /TID=Rn.18248.1 /TIER=Stack /STK=12 /UG=Rn.18248 /UG_TITLE=ESTs, Highly similar to T00744 KIAA0154 protein homolog A-735G6.4 (H.sapiens) BI278620 golgi associated, gamma adaptin ear containing, ARF binding protein 2 Gga2 293455 NM_001100519 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0030117 // membrane coat // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // not recorded /// 0044431 // Golgi apparatus part // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030306 // ADP-ribosylation factor binding // inferred from electronic annotation /// 0030306 // ADP-ribosylation factor binding // not recorded 1372409_at BI286562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286562 /DB_XREF=gi:14941327 /DB_XREF=UI-R-CT0s-cao-g-07-0-UI.s1 /CLONE=UI-R-CT0s-cao-g-07-0-UI /FEA=EST /CNT=13 /TID=Rn.9596.1 /TIER=Stack /STK=12 /UG=Rn.9596 /UG_TITLE=ESTs, Moderately similar to Y110_HUMAN HYPOTHETICAL PROTEIN KIAA0110 (H.sapiens) BI286562 MAD2L1 binding protein Mad2l1bp 316237 NM_001009699 0007093 // mitotic cell cycle checkpoint // not recorded /// 0007096 // regulation of exit from mitosis // inferred from electronic annotation /// 0007096 // regulation of exit from mitosis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372410_at AW251360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251360 /DB_XREF=gi:6594951 /DB_XREF=UI-R-BJ0-adh-c-02-0-UI.s1 /CLONE=UI-R-BJ0-adh-c-02-0-UI /FEA=EST /CNT=13 /TID=Rn.17708.1 /TIER=Stack /STK=12 /UG=Rn.17708 /UG_TITLE=ESTs AW251360 C1q and tumor necrosis factor related protein 6 C1qtnf6 315114 NM_001034932 0005576 // extracellular region // inferred from electronic annotation 1372411_at BE110638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110638 /DB_XREF=gi:8502743 /DB_XREF=UI-R-BJ1-avu-c-08-0-UI.s1 /CLONE=UI-R-BJ1-avu-c-08-0-UI /FEA=EST /CNT=13 /TID=Rn.31499.1 /TIER=Stack /STK=12 /UG=Rn.31499 /UG_TITLE=ESTs, Highly similar to zinc-finger protein MCG4 (H.sapiens) BE110638 1372412_at AA943723 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943723 /DB_XREF=gi:3103639 /DB_XREF=EST199222 /CLONE=RBRAO44 /FEA=EST /CNT=13 /TID=Rn.14849.1 /TIER=Stack /STK=12 /UG=Rn.14849 /UG_TITLE=ESTs AA943723 THAP domain containing, apoptosis associated protein 3 Thap3 362667 NM_001108695 0003676 // nucleic acid binding // inferred from electronic annotation 1372413_at BI278800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278800 /DB_XREF=gi:14926004 /DB_XREF=UI-R-CX0-bwx-a-06-0-UI.s1 /CLONE=UI-R-CX0-bwx-a-06-0-UI /FEA=EST /CNT=12 /TID=Rn.2727.1 /TIER=Stack /STK=12 /UG=Rn.2727 /UG_TITLE=ESTs, Highly similar to cell cycle-regulated factor p78 (H.sapiens) BI278800 microspherule protein 1 Mcrs1 300222 NM_001013106 0071339 // MLL1 complex // not recorded 0005515 // protein binding // not recorded 1372414_at BI281979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281979 /DB_XREF=gi:14932274 /DB_XREF=UI-R-CU0s-cbv-a-02-0-UI.s1 /CLONE=UI-R-CU0s-cbv-a-02-0-UI /FEA=EST /CNT=12 /TID=Rn.9407.1 /TIER=Stack /STK=12 /UG=Rn.9407 /UG_TITLE=ESTs BI281979 1372415_at BM385649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385649 /DB_XREF=gi:18185702 /DB_XREF=UI-R-DM1-ckd-l-24-0-UI.s1 /CLONE=UI-R-DM1-ckd-l-24-0-UI /FEA=EST /CNT=12 /TID=Rn.9533.1 /TIER=Stack /STK=12 /UG=Rn.9533 /UG_TITLE=ESTs BM385649 general transcription factor IIH, polypeptide 3 Gtf2h3 288651 NM_001024236 0000718 // nucleotide-excision repair, DNA damage removal // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0000439 // core TFIIH complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005675 // holo TFIIH complex // not recorded /// 0005675 // holo TFIIH complex // inferred from sequence or structural similarity /// 0005675 // holo TFIIH complex // inferred from electronic annotation 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0008094 // DNA-dependent ATPase activity // inferred from sequence or structural similarity /// 0008094 // DNA-dependent ATPase activity // inferred from electronic annotation /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // not recorded /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from sequence or structural similarity /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from electronic annotation /// 0016251 // general RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1372416_at BI291300 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291300 /DB_XREF=gi:14950710 /DB_XREF=UI-R-CV2-cgo-b-06-0-UI.s1 /CLONE=UI-R-CV2-cgo-b-06-0-UI /FEA=EST /CNT=12 /TID=Rn.79894.1 /TIER=Stack /STK=12 /UG=Rn.79894 /UG_TITLE=ESTs, Highly similar to B36738 orphan receptor TR2, splice form TR2-11 (H.sapiens) BI291300 nuclear receptor subfamily 2, group C, member 1 Nr2c1 252924 NM_145780 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372417_at AA945069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945069 /DB_XREF=gi:3104985 /DB_XREF=EST200568 /CLONE=RLIAG11 /FEA=EST /CNT=12 /TID=Rn.7934.1 /TIER=Stack /STK=12 /UG=Rn.7934 /UG_TITLE=ESTs AA945069 SERTA domain containing 1 Sertad1 361526 NM_001007735 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded 1372418_at BI285443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285443 /DB_XREF=gi:14939086 /DB_XREF=UI-R-DD0-caa-b-08-0-UI.s1 /CLONE=UI-R-DD0-caa-b-08-0-UI /FEA=EST /CNT=12 /TID=Rn.45763.1 /TIER=Stack /STK=12 /UG=Rn.45763 /UG_TITLE=ESTs BI285443 similar to 2300003P22Rik protein RGD1560859 500243 XR_008965 /// XR_086234 1372419_at BG380296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380296 /DB_XREF=gi:13304768 /DB_XREF=UI-R-CS0-btv-d-10-0-UI.s1 /CLONE=UI-R-CS0-btv-d-10-0-UI /FEA=EST /CNT=12 /TID=Rn.6570.1 /TIER=Stack /STK=12 /UG=Rn.6570 /UG_TITLE=ESTs, Weakly similar to casein kinase 1 gamma 1 (Rattus norvegicus) (R.norvegicus) BG380296 vaccinia related kinase 3 Vrk3 361565 NM_001005561 0006468 // protein phosphorylation // inferred from electronic annotation /// 0032516 // positive regulation of phosphoprotein phosphatase activity // inferred from electronic annotation /// 0032516 // positive regulation of phosphoprotein phosphatase activity // not recorded /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070373 // negative regulation of ERK1 and ERK2 cascade // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0004672 // protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // not recorded 1372420_at AI408084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408084 /DB_XREF=gi:4251588 /DB_XREF=EST236374 /CLONE=ROVEF02 /FEA=EST /CNT=12 /TID=Rn.3559.1 /TIER=Stack /STK=12 /UG=Rn.3559 /UG_TITLE=ESTs, Weakly similar to PMP2 RAT 22 KD PEROXISOMAL MEMBRANE PROTEIN (R.norvegicus) AI408084 MPV17 mitochondrial membrane protein-like 2 Mpv17l2 290645 NM_001106072 0005739 // mitochondrion // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 1372421_at AA943766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943766 /DB_XREF=gi:3103682 /DB_XREF=EST199265 /CLONE=RBRAP44 /FEA=EST /CNT=12 /TID=Rn.7635.1 /TIER=Stack /STK=12 /UG=Rn.7635 /UG_TITLE=ESTs, Moderately similar to ASPG MOUSE N4-(BETA-N-ACETYLGLUCOSAMINYL)-L-ASPARAGINASE PRECURSOR (M.musculus) AA943766 aspartylglucosaminidase Aga 290923 NM_001031641 0006517 // protein deglycosylation // inferred from electronic annotation /// 0006517 // protein deglycosylation // not recorded /// 0051604 // protein maturation // inferred from electronic annotation /// 0051604 // protein maturation // not recorded 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded 0003948 // N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity // inferred from direct assay /// 0003948 // N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity // not recorded /// 0003948 // N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0043621 // protein self-association // inferred from direct assay 1372422_at AI175506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175506 /DB_XREF=gi:3726144 /DB_XREF=EST219058 /CLONE=RMUCO33 /FEA=EST /CNT=12 /TID=Rn.3117.2 /TIER=Stack /STK=12 /UG=Rn.3117 /LL=83513 /UG_GENE=Mmp24 /UG_TITLE=matrix metalloproteinase 24 (membrane-inserted) AI175506 1372423_at BI286396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286396 /DB_XREF=gi:14941001 /DB_XREF=UI-R-DE0-cak-e-02-0-UI.s1 /CLONE=UI-R-DE0-cak-e-02-0-UI /FEA=EST /CNT=12 /TID=Rn.8546.1 /TIER=Stack /STK=12 /UG=Rn.8546 /UG_TITLE=ESTs BI286396 PERP, TP53 apoptosis effector Perp 292949 NM_001106265 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1372424_at BF393937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393937 /DB_XREF=gi:11378801 /DB_XREF=UI-R-CA0-bgw-h-02-0-UI.s1 /CLONE=UI-R-CA0-bgw-h-02-0-UI /FEA=EST /CNT=12 /TID=Rn.62709.1 /TIER=Stack /STK=12 /UG=Rn.62709 /UG_TITLE=ESTs BF393937 1372425_at BF403896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403896 /DB_XREF=gi:11391871 /DB_XREF=UI-R-CA1-bjd-d-07-0-UI.s1 /CLONE=UI-R-CA1-bjd-d-07-0-UI /FEA=EST /CNT=12 /TID=Rn.53586.1 /TIER=Stack /STK=12 /UG=Rn.53586 /UG_TITLE=ESTs BF403896 1372426_at AI411997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411997 /DB_XREF=gi:4255501 /DB_XREF=EST240291 /CLONE=RKIEJ17 /FEA=EST /CNT=12 /TID=Rn.2446.1 /TIER=Stack /STK=12 /UG=Rn.2446 /UG_TITLE=ESTs AI411997 ADAMTS-like 4 Adamtsl4 310670 NM_001034012 0006915 // apoptosis // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005614 // interstitial matrix // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0002020 // protease binding // not recorded /// 0002020 // protease binding // inferred from sequence or structural similarity /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation 1372427_at AI170542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170542 /DB_XREF=gi:3710582 /DB_XREF=EST216470 /CLONE=RLUCQ08 /FEA=EST /CNT=12 /TID=Rn.7806.1 /TIER=Stack /STK=12 /UG=Rn.7806 /UG_TITLE=ESTs AI170542 ribonucleoprotein, PTB-binding 1 Raver1 298705 NM_001013939 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372428_at BG380252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380252 /DB_XREF=gi:13304724 /DB_XREF=UI-R-CS0-btq-g-10-0-UI.s1 /CLONE=UI-R-CS0-btq-g-10-0-UI /FEA=EST /CNT=12 /TID=Rn.20233.1 /TIER=Stack /STK=12 /UG=Rn.20233 /UG_TITLE=ESTs, Highly similar to heat shock 40kD protein 2; multiple endocrine neoplasia type 1 candidate protein 18 (Mus musculus) (M.musculus) BG380252 DnaJ (Hsp40) homolog, subfamily C, member 4 Dnajc4 361717 NM_001013196 0006457 // protein folding // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // inferred from electronic annotation /// 0006680 // glucosylceramide catabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008206 // bile acid metabolic process // inferred from sequence or structural similarity /// 0016142 // O-glycoside catabolic process // inferred from sequence or structural similarity 0005739 // mitochondrion // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence or structural similarity 0003824 // catalytic activity // inferred from electronic annotation /// 0004348 // glucosylceramidase activity // inferred from electronic annotation /// 0008422 // beta-glucosidase activity // inferred from electronic annotation /// 0008422 // beta-glucosidase activity // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1372429_at BF419113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419113 /DB_XREF=gi:11407102 /DB_XREF=UI-R-BJ2-bqn-f-10-0-UI.s1 /CLONE=UI-R-BJ2-bqn-f-10-0-UI /FEA=EST /CNT=12 /TID=Rn.8611.1 /TIER=Stack /STK=12 /UG=Rn.8611 /UG_TITLE=ESTs BF419113 adrenocortical dysplasia homolog (mouse) Acd 307798 NM_001037193 0000723 // telomere maintenance // not recorded /// 0000723 // telomere maintenance // inferred from electronic annotation /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001655 // urogenital system development // inferred from electronic annotation /// 0001655 // urogenital system development // not recorded /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0016233 // telomere capping // not recorded /// 0016233 // telomere capping // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0031848 // protection from non-homologous end joining at telomere // inferred from electronic annotation /// 0031848 // protection from non-homologous end joining at telomere // not recorded /// 0032202 // telomere assembly // inferred from electronic annotation /// 0032202 // telomere assembly // not recorded /// 0032211 // negative regulation of telomere maintenance via telomerase // inferred from electronic annotation /// 0032211 // negative regulation of telomere maintenance via telomerase // not recorded /// 0035282 // segmentation // inferred from electronic annotation /// 0035282 // segmentation // not recorded /// 0051973 // positive regulation of telomerase activity // inferred from electronic annotation /// 0051973 // positive regulation of telomerase activity // not recorded /// 0060381 // positive regulation of single-stranded telomeric DNA binding // inferred from electronic annotation /// 0060381 // positive regulation of single-stranded telomeric DNA binding // not recorded /// 0070198 // protein localization to chromosome, telomeric region // inferred from electronic annotation /// 0070198 // protein localization to chromosome, telomeric region // not recorded 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0000781 // chromosome, telomeric region // not recorded /// 0000783 // nuclear telomere cap complex // inferred from electronic annotation /// 0000783 // nuclear telomere cap complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0070182 // DNA polymerase binding // inferred from electronic annotation /// 0070182 // DNA polymerase binding // not recorded 1372430_at H31887 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31887 /DB_XREF=gi:977304 /DB_XREF=EST106421 /CLONE=RPCBC38 /FEA=EST /CNT=12 /TID=Rn.14601.1 /TIER=Stack /STK=12 /UG=Rn.14601 /UG_TITLE=ESTs H31887 similar to RIKEN cDNA 1700037H04 RGD1311739 311428 NM_001025691 1372431_at AI575434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575434 /DB_XREF=gi:4559810 /DB_XREF=UI-R-Y0-vg-c-11-0-UI.s1 /CLONE=UI-R-Y0-vg-c-11-0-UI /FEA=EST /CNT=12 /TID=Rn.21191.1 /TIER=Stack /STK=12 /UG=Rn.21191 /LL=56283 /UG_GENE=Rpm12 /UG_TITLE=ribosomal protein, mitochondrial, L12 AI575434 mitochondrial ribosomal protein L12 Mrpl12 303746 NM_001029900 0006390 // transcription from mitochondrial promoter // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005762 // mitochondrial large ribosomal subunit // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372432_at BF395125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395125 /DB_XREF=gi:11380051 /DB_XREF=UI-R-CM0-bji-f-06-0-UI.s1 /CLONE=UI-R-CM0-bji-f-06-0-UI /FEA=EST /CNT=12 /TID=Rn.20400.1 /TIER=Stack /STK=12 /UG=Rn.20400 /UG_TITLE=ESTs, Highly similar to T50839 U4U6 small nuclear ribonucleoprotein hPrp3 (H.sapiens) BF395125 PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae) Prpf3 361995 NM_001108559 0006397 // mRNA processing // inferred from electronic annotation 0015030 // Cajal body // not recorded 0005515 // protein binding // not recorded 1372433_at AI104715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104715 /DB_XREF=gi:3709012 /DB_XREF=EST214004 /CLONE=RHECI13 /FEA=EST /CNT=12 /TID=Rn.19377.1 /TIER=Stack /STK=12 /UG=Rn.19377 /UG_TITLE=ESTs, Highly similar to T08694 hypothetical protein DKFZp564O092.1 (H.sapiens) AI104715 neuroguidin, EIF4E binding protein Ngdn 305887 NM_001107263 1372434_at BE098114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098114 /DB_XREF=gi:8489977 /DB_XREF=UI-R-BJ1-ata-a-09-0-UI.s1 /CLONE=UI-R-BJ1-ata-a-09-0-UI /FEA=EST /CNT=12 /TID=Rn.19866.1 /TIER=Stack /STK=12 /UG=Rn.19866 /UG_TITLE=ESTs, Highly similar to T14765 hypothetical protein DKFZp434N014.1 (H.sapiens) BE098114 CASK-interacting protein CIP98 Cip98 313255 NM_181088 0001895 // retina homeostasis // inferred from electronic annotation /// 0001895 // retina homeostasis // not recorded /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0050953 // sensory perception of light stimulus // inferred from electronic annotation /// 0050953 // sensory perception of light stimulus // not recorded /// 0060122 // inner ear receptor stereocilium organization // not recorded /// 0060122 // inner ear receptor stereocilium organization // inferred from sequence or structural similarity /// 0060122 // inner ear receptor stereocilium organization // inferred from electronic annotation 0001917 // photoreceptor inner segment // inferred from direct assay /// 0002142 // stereocilia ankle link complex // inferred from electronic annotation /// 0002142 // stereocilia ankle link complex // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005884 // actin filament // inferred from electronic annotation /// 0005884 // actin filament // not recorded /// 0005929 // cilium // inferred from electronic annotation /// 0005929 // cilium // not recorded /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from electronic annotation /// 0032391 // photoreceptor connecting cilium // inferred from direct assay /// 0032420 // stereocilium // inferred from direct assay /// 0032420 // stereocilium // not recorded /// 0032420 // stereocilium // inferred from sequence or structural similarity /// 0032420 // stereocilium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction 1372435_at BI297507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297507 /DB_XREF=gi:14962942 /DB_XREF=UI-R-CV2-cgl-a-10-0-UI.s1 /CLONE=UI-R-CV2-cgl-a-10-0-UI /FEA=EST /CNT=12 /TID=Rn.66226.1 /TIER=Stack /STK=12 /UG=Rn.66226 /UG_TITLE=ESTs BI297507 1372436_at BG668434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668434 /DB_XREF=gi:13890356 /DB_XREF=DRABXA01 /CLONE=DRABXA01 /FEA=EST /CNT=12 /TID=Rn.23937.1 /TIER=Stack /STK=12 /UG=Rn.23937 /UG_TITLE=ESTs, Weakly similar to TD53_MOUSE TUMOR PROTEIN D53 (MD53) (D52-LIKE 1) (M.musculus) BG668434 tumor protein D52-like 2 Tpd52l2 296480 NM_198744 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1372437_at BM390921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390921 /DB_XREF=gi:18190974 /DB_XREF=UI-R-CN1-cjp-m-13-0-UI.s1 /CLONE=UI-R-CN1-cjp-m-13-0-UI /FEA=EST /CNT=81 /TID=Rn.3477.1 /TIER=Stack /STK=11 /UG=Rn.3477 /UG_TITLE=ESTs, Highly similar to 2120310B RNA polymerase II elongation factor (M.musculus) BM390921 S-phase kinase-associated protein 1 Skp1 287280 NM_001007608 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0019005 // SCF ubiquitin ligase complex // not recorded /// 0019005 // SCF ubiquitin ligase complex // inferred from sequence or structural similarity /// 0019005 // SCF ubiquitin ligase complex // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372438_at AI411100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411100 /DB_XREF=gi:4254604 /DB_XREF=EST239394 /CLONE=RKIET39 /FEA=EST /CNT=34 /TID=Rn.3368.1 /TIER=Stack /STK=11 /UG=Rn.3368 /UG_TITLE=ESTs, Weakly similar to T43198 nitrilaseFhit protein - Caenorhabditis elegans (C.elegans) AI411100 nitrilase family, member 2 Nit2 288174 NM_001034126 0006807 // nitrogen compound metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0016787 // hydrolase activity // inferred from electronic annotation /// 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation /// 0050152 // omega-amidase activity // inferred from electronic annotation 1372439_at AI176393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176393 /DB_XREF=gi:3727031 /DB_XREF=EST219977 /CLONE=ROVBR22 /FEA=EST /CNT=30 /TID=Rn.4064.1 /TIER=Stack /STK=11 /UG=Rn.4064 /UG_TITLE=ESTs AI176393 collagen, type IV, alpha 1 Col4a1 290905 NM_001135009 0030855 // epithelial cell differentiation // inferred from expression pattern 0005581 // collagen // inferred from electronic annotation /// 0005587 // collagen type IV // inferred from electronic annotation /// 0005587 // collagen type IV // not recorded /// 0005604 // basement membrane // not recorded /// 0005604 // basement membrane // inferred from electronic annotation 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0048407 // platelet-derived growth factor binding // inferred from electronic annotation /// 0048407 // platelet-derived growth factor binding // not recorded 1372440_at BI275818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275818 /DB_XREF=gi:14920114 /DB_XREF=UI-R-CX0-bxg-h-11-0-UI.s1 /CLONE=UI-R-CX0-bxg-h-11-0-UI /FEA=EST /CNT=26 /TID=Rn.2271.1 /TIER=Stack /STK=11 /UG=Rn.2271 /UG_TITLE=ESTs, Highly similar to GLIA DERIVED NEXIN PRECURSOR (R.norvegicus) BI275818 serine (or cysteine) peptidase inhibitor, clade E, member 2 Serpine2 29366 NM_019197 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007566 // embryo implantation // inferred from expression pattern /// 0007596 // blood coagulation // not recorded /// 0007596 // blood coagulation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009314 // response to radiation // inferred from expression pattern /// 0009611 // response to wounding // inferred from electronic annotation /// 0009611 // response to wounding // not recorded /// 0010466 // negative regulation of peptidase activity // not recorded /// 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010544 // negative regulation of platelet activation // inferred from electronic annotation /// 0010544 // negative regulation of platelet activation // not recorded /// 0010757 // negative regulation of plasminogen activation // inferred from electronic annotation /// 0010757 // negative regulation of plasminogen activation // not recorded /// 0010766 // negative regulation of sodium ion transport // inferred from electronic annotation /// 0010766 // negative regulation of sodium ion transport // not recorded /// 0010951 // negative regulation of endopeptidase activity // not recorded /// 0010976 // positive regulation of neuron projection development // inferred from direct assay /// 0014067 // negative regulation of phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014067 // negative regulation of phosphoinositide 3-kinase cascade // not recorded /// 0021683 // cerebellar granular layer morphogenesis // inferred from electronic annotation /// 0021683 // cerebellar granular layer morphogenesis // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030195 // negative regulation of blood coagulation // inferred from direct assay /// 0030195 // negative regulation of blood coagulation // not recorded /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0032940 // secretion by cell // inferred from electronic annotation /// 0032940 // secretion by cell // not recorded /// 0032940 // secretion by cell // inferred from direct assay /// 0033363 // secretory granule organization // inferred from direct assay /// 0033363 // secretory granule organization // not recorded /// 0033363 // secretory granule organization // inferred from electronic annotation /// 0042177 // negative regulation of protein catabolic process // inferred from electronic annotation /// 0042177 // negative regulation of protein catabolic process // not recorded /// 0042177 // negative regulation of protein catabolic process // inferred from direct assay /// 0042628 // mating plug formation // inferred from electronic annotation /// 0042628 // mating plug formation // not recorded /// 0045861 // negative regulation of proteolysis // inferred from direct assay /// 0045861 // negative regulation of proteolysis // not recorded /// 0045879 // negative regulation of smoothened signaling pathway // inferred from electronic annotation /// 0045879 // negative regulation of smoothened signaling pathway // not recorded /// 0048505 // regulation of timing of cell differentiation // inferred from electronic annotation /// 0048505 // regulation of timing of cell differentiation // not recorded /// 0048711 // positive regulation of astrocyte differentiation // not recorded /// 0050974 // detection of mechanical stimulus involved in sensory perception // inferred from electronic annotation /// 0050974 // detection of mechanical stimulus involved in sensory perception // not recorded /// 0051966 // regulation of synaptic transmission, glutamatergic // inferred from electronic annotation /// 0051966 // regulation of synaptic transmission, glutamatergic // not recorded /// 0060291 // long-term synaptic potentiation // inferred from electronic annotation /// 0060291 // long-term synaptic potentiation // not recorded /// 0060384 // innervation // inferred from electronic annotation /// 0060384 // innervation // not recorded /// 0061108 // seminal vesicle epithelium development // inferred from electronic annotation /// 0061108 // seminal vesicle epithelium development // not recorded /// 0061110 // dense core granule biogenesis // inferred from direct assay /// 0090331 // negative regulation of platelet aggregation // inferred from electronic annotation /// 0090331 // negative regulation of platelet aggregation // not recorded 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0031012 // extracellular matrix // not recorded /// 0031091 // platelet alpha granule // not recorded /// 0031232 // extrinsic to external side of plasma membrane // not recorded /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0031594 // neuromuscular junction // not recorded /// 0043025 // neuronal cell body // inferred from direct assay /// 0044421 // extracellular region part // not recorded /// 0044421 // extracellular region part // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from direct assay /// 0004867 // serine-type endopeptidase inhibitor activity // not recorded /// 0004867 // serine-type endopeptidase inhibitor activity // traceable author statement /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005539 // glycosaminoglycan binding // not recorded /// 0008201 // heparin binding // inferred from direct assay /// 0008201 // heparin binding // not recorded /// 0008201 // heparin binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1372441_at BE107091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107091 /DB_XREF=gi:8499196 /DB_XREF=UI-R-BS1-ayp-g-03-0-UI.s1 /CLONE=UI-R-BS1-ayp-g-03-0-UI /FEA=EST /CNT=28 /TID=Rn.9079.1 /TIER=Stack /STK=11 /UG=Rn.9079 /UG_TITLE=ESTs, Highly similar to CHD4_HUMAN CHROMODOMAIN HELICASE-DNA-BINDING PROTEIN 4 (H.sapiens) BE107091 chromodomain helicase DNA binding protein 4 Chd4 117535 XM_001063352 /// XM_232354 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0007231 // osmosensory signaling pathway // non-traceable author statement /// 0045449 // regulation of transcription // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0016581 // NuRD complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation 1372442_at BG673216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG673216 /DB_XREF=gi:13895315 /DB_XREF=DRNBPH11 /CLONE=DRNBPH11 /FEA=EST /CNT=29 /TID=Rn.3887.1 /TIER=Stack /STK=11 /UG=Rn.3887 /UG_TITLE=ESTs BG673216 1372443_at AI409038 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409038 /DB_XREF=gi:4252542 /DB_XREF=EST237329 /CLONE=RKIDO93 /FEA=EST /CNT=24 /TID=Rn.54164.1 /TIER=Stack /STK=11 /UG=Rn.54164 /UG_TITLE=ESTs AI409038 low density lipoprotein receptor-related protein 11 Lrp11 292462 NM_001106217 1372444_at AW918352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918352 /DB_XREF=gi:8084127 /DB_XREF=EST349656 /CLONE=RGIER12 /FEA=EST /CNT=35 /TID=Rn.4046.1 /TIER=Stack /STK=11 /UG=Rn.4046 /UG_TITLE=ESTs AW918352 1372445_at AI171783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171783 /DB_XREF=gi:3711823 /DB_XREF=EST217765 /CLONE=RMUBQ66 /FEA=EST /CNT=29 /TID=Rn.7477.1 /TIER=Stack /STK=11 /UG=Rn.7477 /UG_TITLE=ESTs, Highly similar to S57500 signal recognition particle - mouse (M.musculus) AI171783 signal recognition particle 9 Srp9 690345 NM_001126095 0006614 // SRP-dependent cotranslational protein targeting to membrane // inferred from electronic annotation /// 0045900 // negative regulation of translational elongation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005786 // signal recognition particle, endoplasmic reticulum targeting // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0048500 // signal recognition particle // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008312 // 7S RNA binding // inferred from electronic annotation 1372446_at AI172276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172276 /DB_XREF=gi:3712316 /DB_XREF=EST218277 /CLONE=RMUBX23 /FEA=EST /CNT=21 /TID=Rn.4016.1 /TIER=Stack /STK=11 /UG=Rn.4016 /UG_TITLE=ESTs AI172276 protein phosphatase 1, regulatory (inhibitor) subunit 2 Ppp1r2 192361 NM_138823 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0009966 // regulation of signal transduction // inferred from electronic annotation /// 0043666 // regulation of phosphoprotein phosphatase activity // inferred from electronic annotation 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from electronic annotation 1372447_at BI275155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275155 /DB_XREF=gi:14886727 /DB_XREF=UI-R-CX0-bxc-c-02-0-UI.s1 /CLONE=UI-R-CX0-bxc-c-02-0-UI /FEA=EST /CNT=19 /TID=Rn.15098.1 /TIER=Stack /STK=11 /UG=Rn.15098 /UG_TITLE=ESTs BI275155 1372448_at D86711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D86711 /DB_XREF=gi:1549215 /DB_XREF=D86711 /FEA=EST /CNT=22 /TID=Rn.4240.1 /TIER=Stack /STK=11 /UG=Rn.4240 /UG_TITLE=ESTs D86711 1372449_at AW253616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253616 /DB_XREF=gi:6597207 /DB_XREF=UI-R-BJ0-aer-b-05-0-UI.s1 /CLONE=UI-R-BJ0-aer-b-05-0-UI /FEA=EST /CNT=20 /TID=Rn.935.1 /TIER=Stack /STK=11 /UG=Rn.935 /UG_TITLE=ESTs AW253616 1372450_at AW916609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916609 /DB_XREF=gi:8082338 /DB_XREF=EST347913 /CLONE=RGIDS36 /FEA=EST /CNT=20 /TID=Rn.7246.1 /TIER=Stack /STK=11 /UG=Rn.7246 /UG_TITLE=ESTs AW916609 rCG51296-like LOC100363376 100363376 XM_002725419 /// XM_002725420 /// XM_002728617 /// XM_002728618 1372451_at AI598346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598346 /DB_XREF=gi:4607394 /DB_XREF=EST250049 /CLONE=REMDO53 /FEA=EST /CNT=19 /TID=Rn.17148.1 /TIER=Stack /STK=11 /UG=Rn.17148 /UG_TITLE=ESTs AI598346 Trf-proximal protein homolog-like /// mediator complex subunit 20 LOC100360472 /// Med20 100360472 /// 316209 NM_001013178 /// XM_002730018 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0016592 // mediator complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation 1372452_at BG666882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666882 /DB_XREF=gi:13888804 /DB_XREF=DRACPD08 /CLONE=DRACPD08 /FEA=EST /CNT=18 /TID=Rn.8234.1 /TIER=Stack /STK=11 /UG=Rn.8234 /UG_TITLE=ESTs BG666882 1372453_at AI012637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012637 /DB_XREF=gi:3226469 /DB_XREF=EST207088 /CLONE=RPLAZ83 /FEA=EST /CNT=18 /TID=Rn.6666.1 /TIER=Stack /STK=11 /UG=Rn.6666 /UG_TITLE=ESTs AI012637 down-regulator of transcription 1 Dr1 289881 NM_001011914 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1372454_at BG378568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378568 /DB_XREF=gi:13303040 /DB_XREF=UI-R-CV1-bvr-a-07-0-UI.s1 /CLONE=UI-R-CV1-bvr-a-07-0-UI /FEA=EST /CNT=25 /TID=Rn.4029.1 /TIER=Stack /STK=11 /UG=Rn.4029 /UG_TITLE=ESTs BG378568 similar to RIKEN cDNA 2210016L21 gene RGD1311899 288704 NM_001009630 1372455_at AI410264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410264 /DB_XREF=gi:4253768 /DB_XREF=EST238557 /CLONE=RKIDX08 /FEA=EST /CNT=21 /TID=Rn.2146.1 /TIER=Stack /STK=11 /UG=Rn.2146 /UG_TITLE=ESTs, Highly similar to TNE2_HUMAN TETRASPAN NET-2 (H.sapiens) AI410264 tetraspanin 12 Tspan12 362326 NM_001015026 0001525 // angiogenesis // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from sequence or structural similarity /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0010842 // retina layer formation // not recorded /// 0010842 // retina layer formation // inferred from sequence or structural similarity /// 0010842 // retina layer formation // inferred from electronic annotation /// 0045765 // regulation of angiogenesis // not recorded /// 0045765 // regulation of angiogenesis // inferred from sequence or structural similarity /// 0045765 // regulation of angiogenesis // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0042813 // Wnt receptor activity // not recorded /// 0042813 // Wnt receptor activity // inferred from sequence or structural similarity 1372456_at AI171229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171229 /DB_XREF=gi:3711269 /DB_XREF=EST217184 /CLONE=RMUBH85 /FEA=EST /CNT=19 /TID=Rn.22173.1 /TIER=Stack /STK=11 /UG=Rn.22173 /UG_TITLE=ESTs AI171229 mitochondrial ribosomal protein S31 Mrps31 290850 NM_001106091 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded 1372457_at BF284182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284182 /DB_XREF=gi:11215252 /DB_XREF=EST448773 /CLONE=RGIEM14 /FEA=EST /CNT=18 /TID=Rn.24538.1 /TIER=Stack /STK=11 /UG=Rn.24538 /UG_TITLE=ESTs BF284182 mitochondrial tumor suppressor 1 Mtus1 306487 NM_178093 0007049 // cell cycle // inferred from electronic annotation /// 0071375 // cellular response to peptide hormone stimulus // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1372458_at AI235220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235220 /DB_XREF=gi:4136064 /DB_XREF=EST231782 /CLONE=ROVCP07 /FEA=EST /CNT=18 /TID=Rn.13296.1 /TIER=Stack /STK=11 /UG=Rn.13296 /UG_TITLE=ESTs, Weakly similar to All-1 protein +GTE form (M.musculus) AI235220 SET domain containing (lysine methyltransferase) 8 /// SET domain containing (lysine methyltransferase) 8, pseudogene 1 Setd8 /// Setd8-ps1 498178 /// 689820 XM_001072149 /// XM_002724818 /// XM_573394 0016481 // negative regulation of transcription // not recorded 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded 1372459_at AW520792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520792 /DB_XREF=gi:7163170 /DB_XREF=UI-R-BJ0p-agh-e-08-0-UI.s1 /CLONE=UI-R-BJ0p-agh-e-08-0-UI /FEA=EST /CNT=17 /TID=Rn.1036.1 /TIER=Stack /STK=11 /UG=Rn.1036 /UG_TITLE=ESTs AW520792 vasodilator-stimulated phosphoprotein Vasp 361517 NM_001108475 0001843 // neural tube closure // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030175 // filopodium // inferred from electronic annotation /// 0030175 // filopodium // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005522 // profilin binding // not recorded 1372460_at AI172405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172405 /DB_XREF=gi:3712445 /DB_XREF=EST218412 /CLONE=RMUBZ10 /FEA=EST /CNT=40 /TID=Rn.3572.2 /TIER=Stack /STK=11 /UG=Rn.3572 /UG_TITLE=ESTs, Highly similar to 2008109A set gene (R.norvegicus) AI172405 1372461_at BG381708 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381708 /DB_XREF=gi:13306180 /DB_XREF=UI-R-CT0-bue-e-05-0-UI.s1 /CLONE=UI-R-CT0-bue-e-05-0-UI /FEA=EST /CNT=40 /TID=Rn.3572.2 /TIER=Stack /STK=8 /UG=Rn.3572 /UG_TITLE=ESTs, Highly similar to 2008109A set gene (R.norvegicus) BG381708 SET nuclear oncogene Set 307947 NM_001012504 0006334 // nucleosome assembly // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372462_at AI412322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412322 /DB_XREF=gi:4255826 /DB_XREF=EST240620 /CLONE=RBRDV39 /FEA=EST /CNT=22 /TID=Rn.7102.2 /TIER=Stack /STK=11 /UG=Rn.7102 /LL=24818 /UG_GENE=Tcp1 /UG_TITLE=T-complex 1 AI412322 acetyl-Coenzyme A acetyltransferase 2 Acat2 308100 NM_001006995 0001889 // liver development // inferred from expression pattern /// 0007420 // brain development // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0031670 // cellular response to nutrient // inferred from expression pattern /// 0046952 // ketone body catabolic process // inferred from expression pattern /// 0071398 // cellular response to fatty acid // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0003985 // acetyl-CoA C-acetyltransferase activity // inferred from direct assay /// 0003985 // acetyl-CoA C-acetyltransferase activity // not recorded /// 0003985 // acetyl-CoA C-acetyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation 1372463_at AI010084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010084 /DB_XREF=gi:4133155 /DB_XREF=EST204535 /CLONE=RLUBT53 /FEA=EST /CNT=21 /TID=Rn.4001.1 /TIER=Stack /STK=11 /UG=Rn.4001 /UG_TITLE=ESTs AI010084 FCH domain only 2 Fcho2 309129 NM_001191632 /// XM_002728999 /// XM_219503 1372464_at BE109050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109050 /DB_XREF=gi:8501155 /DB_XREF=UI-R-BS1-azc-d-06-0-UI.s1 /CLONE=UI-R-BS1-azc-d-06-0-UI /FEA=EST /CNT=20 /TID=Rn.7764.1 /TIER=Stack /STK=11 /UG=Rn.7764 /UG_TITLE=ESTs, Moderately similar to COG2_MOUSE Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP) (M.musculus) BE109050 coatomer protein complex, subunit gamma Copg 297428 NM_001031822 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0048205 // COPI coating of Golgi vesicle // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005798 // Golgi-associated vesicle // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030126 // COPI vesicle coat // inferred from electronic annotation /// 0030663 // COPI coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372465_at AI409184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409184 /DB_XREF=gi:4252688 /DB_XREF=EST237476 /CLONE=RKIDO21 /FEA=EST /CNT=19 /TID=Rn.25072.1 /TIER=Stack /STK=11 /UG=Rn.25072 /UG_TITLE=ESTs, Weakly similar to T20358 hypothetical protein D2030.8 - Caenorhabditis elegans (C.elegans) AI409184 nucleolar protein family 6 (RNA-associated) Nol6 313167 NM_001107927 0000794 // condensed nuclear chromosome // not recorded /// 0000794 // condensed nuclear chromosome // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation 1372466_at AI408571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408571 /DB_XREF=gi:4252075 /DB_XREF=EST236861 /CLONE=ROVEQ56 /FEA=EST /CNT=18 /TID=Rn.2705.1 /TIER=Stack /STK=11 /UG=Rn.2705 /UG_TITLE=ESTs AI408571 1372467_at AA943794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943794 /DB_XREF=gi:3103710 /DB_XREF=EST199293 /CLONE=RBRAP76 /FEA=EST /CNT=18 /TID=Rn.4264.1 /TIER=Stack /STK=11 /UG=Rn.4264 /UG_TITLE=ESTs AA943794 heparan sulfate 6-O-sulfotransferase 1 Hs6st1 316325 NM_001108210 0001525 // angiogenesis // not recorded /// 0015012 // heparan sulfate proteoglycan biosynthetic process // not recorded /// 0016051 // carbohydrate biosynthetic process // inferred from electronic annotation /// 0048286 // lung alveolus development // not recorded /// 0060716 // labyrinthine layer blood vessel development // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0008146 // sulfotransferase activity // inferred from electronic annotation 1372468_at BI296525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296525 /DB_XREF=gi:14961035 /DB_XREF=UI-R-CV2-cgs-c-04-0-UI.s1 /CLONE=UI-R-CV2-cgs-c-04-0-UI /FEA=EST /CNT=18 /TID=Rn.7386.1 /TIER=Stack /STK=11 /UG=Rn.7386 /UG_TITLE=ESTs, Highly similar to CD97 protein (M.musculus) BI296525 CD97 molecule Cd97 361383 NM_001012164 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372469_at AI178901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178901 /DB_XREF=gi:3729539 /DB_XREF=EST222583 /CLONE=RSPBT01 /FEA=EST /CNT=18 /TID=Rn.7677.1 /TIER=Stack /STK=11 /UG=Rn.7677 /UG_TITLE=ESTs AI178901 1372470_at BI294809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294809 /DB_XREF=gi:14957624 /DB_XREF=UI-R-DK0-cec-d-07-0-UI.s1 /CLONE=UI-R-DK0-cec-d-07-0-UI /FEA=EST /CNT=17 /TID=Rn.9442.1 /TIER=Stack /STK=11 /UG=Rn.9442 /UG_TITLE=ESTs, Moderately similar to ARVC_HUMAN ARMADILLO REPEAT PROTEIN DELETED IN VELO-CARDIO-FACIAL SYNDROME (H.sapiens) BI294809 armadillo repeat gene deleted in velo-cardio-facial syndrome Arvcf 303798 NM_001131013 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1372471_at BI283728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283728 /DB_XREF=gi:14935757 /DB_XREF=UI-R-CW0s-cch-a-08-0-UI.s1 /CLONE=UI-R-CW0s-cch-a-08-0-UI /FEA=EST /CNT=17 /TID=Rn.13004.1 /TIER=Stack /STK=11 /UG=Rn.13004 /UG_TITLE=ESTs BI283728 1372472_at AA859614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859614 /DB_XREF=gi:4230160 /DB_XREF=UI-R-E0-bs-g-02-0-UI.s1 /CLONE=UI-R-E0-bs-g-02-0-UI /FEA=EST /CNT=17 /TID=Rn.16.1 /TIER=Stack /STK=11 /UG=Rn.16 /UG_TITLE=ESTs AA859614 similar to Microtubule-associated protein RP/EB family member 2 (APC-binding protein EB2) (End-binding protein 2) (EB2) LOC679221 679221 NM_001101000 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0008017 // microtubule binding // inferred from electronic annotation 1372473_at AW434048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434048 /DB_XREF=gi:6965355 /DB_XREF=UI-R-BJ0p-afo-f-07-0-UI.s1 /CLONE=UI-R-BJ0p-afo-f-07-0-UI /FEA=EST /CNT=17 /TID=Rn.12180.1 /TIER=Stack /STK=11 /UG=Rn.12180 /UG_TITLE=ESTs AW434048 tight junction protein 1 Tjp1 292994 NM_001106266 0001825 // blastocyst formation // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043116 // negative regulation of vascular permeability // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0071000 // response to magnetism // inferred from expression pattern /// 0071333 // cellular response to glucose stimulus // inferred from expression pattern 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // not recorded /// 0005912 // adherens junction // not recorded /// 0005913 // cell-cell adherens junction // not recorded /// 0005923 // tight junction // inferred from direct assay /// 0005923 // tight junction // inferred from electronic annotation /// 0005923 // tight junction // not recorded /// 0016020 // membrane // not recorded /// 0016323 // basolateral plasma membrane // not recorded /// 0030054 // cell junction // not recorded /// 0043296 // apical junction complex // not recorded /// 0046581 // intercellular canaliculus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0019904 // protein domain specific binding // not recorded 1372474_at AI172184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172184 /DB_XREF=gi:4134715 /DB_XREF=EST218179 /CLONE=RMUBV96 /FEA=EST /CNT=16 /TID=Rn.17193.1 /TIER=Stack /STK=11 /UG=Rn.17193 /UG_TITLE=ESTs, Weakly similar to SYPH RAT SYNAPTOPHYSIN (R.norvegicus) AI172184 Synaptophysin-like 1 Sypl1 366595 NM_001014263 0006810 // transport // inferred from electronic annotation 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from electronic annotation /// 0030141 // stored secretory granule // not recorded 0005215 // transporter activity // inferred from electronic annotation 1372475_at AI410877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410877 /DB_XREF=gi:4254381 /DB_XREF=EST239170 /CLONE=RHECY64 /FEA=EST /CNT=25 /TID=Rn.7298.2 /TIER=Stack /STK=11 /UG=Rn.7298 /UG_TITLE=ESTs, Weakly similar to YQO9_CAEEL Hypothetical 141.2 kDa protein EEED8.9 in chromosome II (C.elegans) AI410877 PTEN induced putative kinase 1 Pink1 298575 NM_001106694 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006950 // response to stress // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0018105 // peptidyl-serine phosphorylation // inferred from electronic annotation /// 0031396 // regulation of protein ubiquitination // not recorded /// 0031396 // regulation of protein ubiquitination // inferred from electronic annotation /// 0032226 // positive regulation of synaptic transmission, dopaminergic // not recorded /// 0032226 // positive regulation of synaptic transmission, dopaminergic // inferred from electronic annotation /// 0033603 // positive regulation of dopamine secretion // not recorded /// 0033603 // positive regulation of dopamine secretion // inferred from electronic annotation /// 0033605 // positive regulation of catecholamine secretion // not recorded /// 0033605 // positive regulation of catecholamine secretion // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043254 // regulation of protein complex assembly // not recorded /// 0043254 // regulation of protein complex assembly // inferred from electronic annotation /// 0090200 // positive regulation of release of cytochrome c from mitochondria // not recorded /// 0090200 // positive regulation of release of cytochrome c from mitochondria // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0010857 // calcium-dependent protein kinase activity // not recorded /// 0010857 // calcium-dependent protein kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0055131 // C3HC4-type RING finger domain binding // not recorded /// 0055131 // C3HC4-type RING finger domain binding // inferred from electronic annotation 1372476_at AW533321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533321 /DB_XREF=gi:7175735 /DB_XREF=UI-R-BU0-anf-e-04-0-UI.s1 /CLONE=UI-R-BU0-anf-e-04-0-UI /FEA=EST /CNT=21 /TID=Rn.23099.1 /TIER=Stack /STK=11 /UG=Rn.23099 /UG_TITLE=ESTs, Moderately similar to delta-6 fatty acid desaturase (Rattus norvegicus) (R.norvegicus) AW533321 fatty acid desaturase 3 Fads3 286922 NM_173137 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016717 // oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation 1372477_at BG373744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373744 /DB_XREF=gi:13270281 /DB_XREF=UI-R-CV1-bsh-d-06-0-UI.s1 /CLONE=UI-R-CV1-bsh-d-06-0-UI /FEA=EST /CNT=20 /TID=Rn.22068.1 /TIER=Stack /STK=11 /UG=Rn.22068 /UG_TITLE=ESTs BG373744 protein phosphatase 1, regulatory (inhibitor) subunit 11 Ppp1r11 294207 NM_212542 0050790 // regulation of catalytic activity // not recorded 0004864 // phosphoprotein phosphatase inhibitor activity // not recorded /// 0004864 // phosphoprotein phosphatase inhibitor activity // traceable author statement /// 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372478_at AI137605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137605 /DB_XREF=gi:3638382 /DB_XREF=UI-R-C0-ho-g-12-0-UI.s1 /CLONE=UI-R-C0-ho-g-12-0-UI /FEA=EST /CNT=20 /TID=Rn.12081.1 /TIER=Stack /STK=11 /UG=Rn.12081 /UG_TITLE=ESTs, Highly similar to T17338 hypothetical protein DKFZp434O125.1 (H.sapiens) AI137605 CKLF-like MARVEL transmembrane domain containing 7 Cmtm7 501065 NM_001109300 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1372479_at AI175666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175666 /DB_XREF=gi:3726304 /DB_XREF=EST219226 /CLONE=ROVBD47 /FEA=EST /CNT=19 /TID=Rn.8739.1 /TIER=Stack /STK=11 /UG=Rn.8739 /UG_TITLE=ESTs AI175666 1372480_at BE117893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117893 /DB_XREF=gi:8509998 /DB_XREF=UI-R-BS1-azm-c-02-0-UI.s1 /CLONE=UI-R-BS1-azm-c-02-0-UI /FEA=EST /CNT=19 /TID=Rn.23557.1 /TIER=Stack /STK=11 /UG=Rn.23557 /UG_TITLE=ESTs BE117893 zinc finger protein 462 Zfp462 362522 XM_002726534 /// XM_342840 0043392 // negative regulation of DNA binding // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1372481_at AI102873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102873 /DB_XREF=gi:3707528 /DB_XREF=EST212162 /CLONE=REMBT96 /FEA=EST /CNT=17 /TID=Rn.2721.1 /TIER=Stack /STK=11 /UG=Rn.2721 /UG_TITLE=ESTs, Moderately similar to CD34 MOUSE HEMATOPOIETIC PROGENITOR CELL ANTIGEN CD34 PRECURSOR (M.musculus) AI102873 1372482_at AI600216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600216 /DB_XREF=gi:4609264 /DB_XREF=EST251919 /CLONE=REMED49 /FEA=EST /CNT=17 /TID=Rn.17295.1 /TIER=Stack /STK=11 /UG=Rn.17295 /UG_TITLE=ESTs AI600216 solute carrier family 39 (zinc transporter), member 13 Slc39a13 295928 NM_001039196 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006829 // zinc ion transport // inferred from electronic annotation /// 0030001 // metal ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0046873 // metal ion transmembrane transporter activity // inferred from electronic annotation 1372483_at AI230979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230979 /DB_XREF=gi:3814859 /DB_XREF=EST227667 /CLONE=REMDD73 /FEA=EST /CNT=17 /TID=Rn.23449.1 /TIER=Stack /STK=11 /UG=Rn.23449 /UG_TITLE=ESTs AI230979 zinc finger protein 469 Zfp469 304302 NM_001107123 0003677 // DNA binding // inferred from electronic annotation 1372484_at AI176231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176231 /DB_XREF=gi:3726869 /DB_XREF=EST219812 /CLONE=ROVBO88 /FEA=EST /CNT=17 /TID=Rn.11548.1 /TIER=Stack /STK=11 /UG=Rn.11548 /UG_TITLE=ESTs AI176231 1372485_at BF281220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281220 /DB_XREF=gi:11212206 /DB_XREF=EST445727 /CLONE=RGIAA43 /FEA=EST /CNT=16 /TID=Rn.81180.1 /TIER=Stack /STK=11 /UG=Rn.81180 /UG_TITLE=ESTs, Highly similar to PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE (R.norvegicus) BF281220 pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha Pcbd1 29700 NM_001007601 0006350 // transcription // inferred from electronic annotation /// 0006558 // L-phenylalanine metabolic process // traceable author statement /// 0006729 // tetrahydrobiopterin biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0043496 // regulation of protein homodimerization activity // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0051289 // protein homotetramerization // inferred from electronic annotation /// 0051289 // protein homotetramerization // not recorded /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0051291 // protein heterooligomerization // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0004505 // phenylalanine 4-monooxygenase activity // inferred from electronic annotation /// 0004505 // phenylalanine 4-monooxygenase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008124 // 4-alpha-hydroxytetrahydrobiopterin dehydratase activity // inferred from electronic annotation /// 0008124 // 4-alpha-hydroxytetrahydrobiopterin dehydratase activity // traceable author statement /// 0016829 // lyase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1372486_at AI236691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236691 /DB_XREF=gi:4136228 /DB_XREF=EST233253 /CLONE=ROVDJ37 /FEA=EST /CNT=16 /TID=Rn.8369.1 /TIER=Stack /STK=11 /UG=Rn.8369 /UG_TITLE=ESTs AI236691 1372487_at BI296006 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296006 /DB_XREF=gi:14960019 /DB_XREF=UI-R-DK0-cfd-c-09-0-UI.s1 /CLONE=UI-R-DK0-cfd-c-09-0-UI /FEA=EST /CNT=16 /TID=Rn.3874.1 /TIER=Stack /STK=11 /UG=Rn.3874 /UG_TITLE=ESTs BI296006 family with sequence similarity 104, member A Fam104a 619573 NM_001034958 1372488_at BM386249 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386249 /DB_XREF=gi:18186302 /DB_XREF=UI-R-CN1-cjf-k-18-0-UI.s1 /CLONE=UI-R-CN1-cjf-k-18-0-UI /FEA=EST /CNT=16 /TID=Rn.2777.1 /TIER=Stack /STK=11 /UG=Rn.2777 /UG_TITLE=ESTs, Weakly similar to E-1 enzyme (Caenorhabditis elegans) (C.elegans) BM386249 enolase-phosphatase 1 Enoph1 305177 NM_001009391 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009086 // methionine biosynthetic process // inferred from electronic annotation /// 0019509 // L-methionine salvage from methylthioadenosine // not recorded /// 0019509 // L-methionine salvage from methylthioadenosine // inferred from sequence or structural similarity /// 0019509 // L-methionine salvage from methylthioadenosine // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008967 // phosphoglycolate phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0043874 // acireductone synthase activity // not recorded /// 0043874 // acireductone synthase activity // inferred from sequence or structural similarity /// 0043874 // acireductone synthase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372489_at AI172498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172498 /DB_XREF=gi:4134757 /DB_XREF=EST218511 /CLONE=RMUCA57 /FEA=EST /CNT=16 /TID=Rn.3704.1 /TIER=Stack /STK=11 /UG=Rn.3704 /UG_TITLE=ESTs AI172498 sarcolemma associated protein Slmap 290533 NM_001106060 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0042383 // sarcolemma // inferred from electronic annotation 1372490_at BF283759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283759 /DB_XREF=gi:11214829 /DB_XREF=EST448350 /CLONE=RGIEG51 /FEA=EST /CNT=16 /TID=Rn.19992.1 /TIER=Stack /STK=11 /UG=Rn.19992 /UG_TITLE=ESTs BF283759 1372491_at AI229647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229647 /DB_XREF=gi:3813534 /DB_XREF=EST226342 /CLONE=REMCJ89 /FEA=EST /CNT=15 /TID=Rn.8311.1 /TIER=Stack /STK=11 /UG=Rn.8311 /UG_TITLE=ESTs AI229647 similar to Ski protein RGD1565591 313757 XM_001077382 /// XM_233731 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1372492_at AI412937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412937 /DB_XREF=gi:4256441 /DB_XREF=EST241237 /CLONE=RKIEG64 /FEA=EST /CNT=15 /TID=Rn.12397.1 /TIER=Stack /STK=11 /UG=Rn.12397 /UG_TITLE=ESTs, Weakly similar to CLD7 RAT CLAUDIN-7 (R.norvegicus) AI412937 claudin 10 Cldn10 290485 NM_001106058 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 1372493_at AI102862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102862 /DB_XREF=gi:3707520 /DB_XREF=EST212151 /CLONE=REMBT83 /FEA=EST /CNT=15 /TID=Rn.2954.1 /TIER=Stack /STK=11 /UG=Rn.2954 /UG_TITLE=ESTs AI102862 coiled-coil domain containing 23 Ccdc23 362578 NM_001038992 /// NM_001038994 1372494_a_at BM384171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384171 /DB_XREF=gi:18184224 /DB_XREF=UI-R-DZ0-cks-f-08-0-UI.s1 /CLONE=UI-R-DZ0-cks-f-08-0-UI /FEA=EST /CNT=15 /TID=Rn.12892.1 /TIER=Stack /STK=11 /UG=Rn.12892 /UG_TITLE=ESTs BM384171 high mobility group 20 B Hmg20b 362825 NM_001108731 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372495_at BI274679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274679 /DB_XREF=gi:14885820 /DB_XREF=UI-R-CX0-bws-g-01-0-UI.s1 /CLONE=UI-R-CX0-bws-g-01-0-UI /FEA=EST /CNT=15 /TID=Rn.18619.1 /TIER=Stack /STK=11 /UG=Rn.18619 /UG_TITLE=ESTs BI274679 similar to chromosome 16 open reading frame 7 RGD1565149 307923 NM_001107440 /// XM_001077968 /// XM_226551 1372496_at BG371538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371538 /DB_XREF=gi:13268075 /DB_XREF=UI-R-CW0-bvw-e-11-0-UI.s1 /CLONE=UI-R-CW0-bvw-e-11-0-UI /FEA=EST /CNT=15 /TID=Rn.15041.1 /TIER=Stack /STK=11 /UG=Rn.15041 /UG_TITLE=ESTs, Weakly similar to JC4538 adrenodoxin precursor - rat (R.norvegicus) BG371538 ferredoxin 1-like Fdx1l 313786 NM_001108002 0005739 // mitochondrion // not recorded 0009055 // electron carrier activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation 1372497_at AI104094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104094 /DB_XREF=gi:3708509 /DB_XREF=EST213383 /CLONE=RHEBX20 /FEA=EST /CNT=15 /TID=Rn.7811.1 /TIER=Stack /STK=11 /UG=Rn.7811 /UG_TITLE=ESTs AI104094 neighbor of Brca1 gene 1 Nbr1 303554 NM_001024765 0016236 // macroautophagy // not recorded /// 0016236 // macroautophagy // inferred from sequence or structural similarity /// 0051259 // protein oligomerization // not recorded /// 0051259 // protein oligomerization // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005770 // late endosome // inferred from sequence or structural similarity /// 0005776 // autophagic vacuole // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031430 // M band // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043130 // ubiquitin binding // not recorded /// 0043130 // ubiquitin binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1372498_at BF285068 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285068 /DB_XREF=gi:11216138 /DB_XREF=EST449659 /CLONE=RGIFA09 /FEA=EST /CNT=15 /TID=Rn.1274.1 /TIER=Stack /STK=11 /UG=Rn.1274 /UG_TITLE=ESTs, Moderately similar to Unknown gene product (H.sapiens) BF285068 cytokine induced apoptosis inhibitor 1 Ciapin1 307649 NM_001007689 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1372499_at BI296329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296329 /DB_XREF=gi:14960659 /DB_XREF=UI-R-DK0-cez-b-04-0-UI.s1 /CLONE=UI-R-DK0-cez-b-04-0-UI /FEA=EST /CNT=15 /TID=Rn.4291.1 /TIER=Stack /STK=11 /UG=Rn.4291 /UG_TITLE=ESTs, Weakly similar to T08700 hypothetical protein DKFZp564G013.1 (H.sapiens) BI296329 ankyrin repeat domain 24 Ankrd24 299639 NM_001106771 0005515 // protein binding // not recorded 1372500_at BG378269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378269 /DB_XREF=gi:13302741 /DB_XREF=UI-R-CV1-bvq-a-11-0-UI.s1 /CLONE=UI-R-CV1-bvq-a-11-0-UI /FEA=EST /CNT=15 /TID=Rn.26214.1 /TIER=Stack /STK=11 /UG=Rn.26214 /UG_TITLE=ESTs, Weakly similar to TMOD MOUSE TROPOMODULIN (M.musculus) BG378269 tropomodulin 3 Tmod3 300838 NM_001011997 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded 0005523 // tropomyosin binding // inferred from electronic annotation 1372501_at BI285007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285007 /DB_XREF=gi:14938222 /DB_XREF=UI-R-DB0-byv-b-05-0-UI.s1 /CLONE=UI-R-DB0-byv-b-05-0-UI /FEA=EST /CNT=15 /TID=Rn.7554.1 /TIER=Stack /STK=11 /UG=Rn.7554 /UG_TITLE=ESTs, Highly similar to splicing factor 3b, subunit 3, 130kD; spliceosome-associated protein 130 (Homo sapiens) (H.sapiens) BI285007 splicing factor 3b, subunit 3 Sf3b3 292019 NM_001106187 /// XM_001077410 /// XM_214697 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372502_at AI579645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI579645 /DB_XREF=gi:4564021 /DB_XREF=UI-R-AA0-ws-a-05-0-UI.s1 /CLONE=UI-R-AA0-ws-a-05-0-UI /FEA=EST /CNT=15 /TID=Rn.7773.1 /TIER=Stack /STK=11 /UG=Rn.7773 /UG_TITLE=ESTs AI579645 neurofibromin 2 (merlin) Nf2 25744 NM_013193 0001707 // mesoderm formation // not recorded /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0007398 // ectoderm development // not recorded /// 0007398 // ectoderm development // inferred from electronic annotation /// 0008156 // negative regulation of DNA replication // not recorded /// 0008156 // negative regulation of DNA replication // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0014010 // Schwann cell proliferation // not recorded /// 0014010 // Schwann cell proliferation // inferred from electronic annotation /// 0022408 // negative regulation of cell-cell adhesion // not recorded /// 0022408 // negative regulation of cell-cell adhesion // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0030308 // negative regulation of cell growth // non-traceable author statement /// 0035330 // regulation of hippo signaling cascade // not recorded /// 0035330 // regulation of hippo signaling cascade // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042518 // negative regulation of tyrosine phosphorylation of Stat3 protein // not recorded /// 0042518 // negative regulation of tyrosine phosphorylation of Stat3 protein // inferred from electronic annotation /// 0042524 // negative regulation of tyrosine phosphorylation of Stat5 protein // not recorded /// 0042524 // negative regulation of tyrosine phosphorylation of Stat5 protein // inferred from electronic annotation /// 0043409 // negative regulation of MAPKKK cascade // not recorded /// 0043409 // negative regulation of MAPKKK cascade // inferred from electronic annotation /// 0045216 // cell-cell junction organization // not recorded /// 0045216 // cell-cell junction organization // inferred from electronic annotation /// 0046426 // negative regulation of JAK-STAT cascade // not recorded /// 0046426 // negative regulation of JAK-STAT cascade // inferred from electronic annotation /// 0051496 // positive regulation of stress fiber assembly // not recorded /// 0051496 // positive regulation of stress fiber assembly // inferred from electronic annotation /// 0070306 // lens fiber cell differentiation // not recorded /// 0070306 // lens fiber cell differentiation // inferred from electronic annotation 0001726 // ruffle // not recorded /// 0001726 // ruffle // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic to membrane // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030175 // filopodium // not recorded /// 0030175 // filopodium // inferred from electronic annotation /// 0032154 // cleavage furrow // not recorded /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045202 // synapse // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005178 // integrin binding // inferred from physical interaction /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction 1372503_at BF283688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283688 /DB_XREF=gi:11214758 /DB_XREF=EST448279 /CLONE=RGIEF49 /FEA=EST /CNT=15 /TID=Rn.3211.1 /TIER=Stack /STK=11 /UG=Rn.3211 /UG_TITLE=ESTs BF283688 tumor necrosis factor ligand superfamily member 12 Tnfsf12 360548 NM_001001513 0006955 // immune response // inferred from electronic annotation /// 0008219 // cell death // not recorded 0005576 // extracellular region // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1372504_at AI179780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179780 /DB_XREF=gi:3730418 /DB_XREF=EST223509 /CLONE=RSPCL69 /FEA=EST /CNT=15 /TID=Rn.20619.1 /TIER=Stack /STK=11 /UG=Rn.20619 /UG_TITLE=ESTs AI179780 dolichyl-phosphate mannosyltransferase polypeptide 3 Dpm3 502017 NM_001109331 0006506 // GPI anchor biosynthetic process // not recorded /// 0031647 // regulation of protein stability // not recorded 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0030176 // integral to endoplasmic reticulum membrane // not recorded /// 0033185 // dolichol-phosphate-mannose synthase complex // not recorded 0004582 // dolichyl-phosphate beta-D-mannosyltransferase activity // not recorded /// 0005515 // protein binding // not recorded 1372505_at BM391393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391393 /DB_XREF=gi:18191446 /DB_XREF=UI-R-DY0-ckq-l-18-0-UI.s1 /CLONE=UI-R-DY0-ckq-l-18-0-UI /FEA=EST /CNT=17 /TID=Rn.6525.1 /TIER=Stack /STK=11 /UG=Rn.6525 /UG_TITLE=ESTs BM391393 YKT6 v-SNARE homolog (S. cerevisiae) Ykt6 64351 NM_031692 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // not recorded /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from sequence or structural similarity /// 0006903 // vesicle targeting // not recorded /// 0006903 // vesicle targeting // inferred from sequence or structural similarity /// 0006904 // vesicle docking involved in exocytosis // not recorded /// 0006904 // vesicle docking involved in exocytosis // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031201 // SNARE complex // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005484 // SNAP receptor activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0019706 // protein-cysteine S-palmitoleyltransferase activity // not recorded /// 0019706 // protein-cysteine S-palmitoleyltransferase activity // inferred from sequence or structural similarity 1372506_at AI233766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233766 /DB_XREF=gi:3817646 /DB_XREF=EST230454 /CLONE=RKIDJ81 /FEA=EST /CNT=17 /TID=Rn.19738.1 /TIER=Stack /STK=11 /UG=Rn.19738 /UG_TITLE=ESTs, Weakly similar to PSE1_MOUSE Proteasome activator complex subunit 1 (Proteasome activator 28-alpha subunit) (PA28alpha) (PA28a) (Activator of multicatalytic protease subunit 1) (11S regulator complex alpha subunit) (REG-alpha) (M.musculus) AI233766 proteasome (prosome, macropain) activator subunit 3 Psme3 287716 NM_001011894 0002523 // leukocyte migration involved in inflammatory response // inferred from mutant phenotype /// 0002675 // positive regulation of acute inflammatory response // inferred from mutant phenotype /// 0002687 // positive regulation of leukocyte migration // inferred from mutant phenotype /// 0006094 // gluconeogenesis // inferred from direct assay /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006094 // gluconeogenesis // traceable author statement /// 0006796 // phosphate metabolic process // inferred from direct assay /// 0006950 // response to stress // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from sequence or structural similarity /// 0007568 // aging // inferred from expression pattern /// 0008217 // regulation of blood pressure // inferred from mutant phenotype /// 0009308 // amine metabolic process // inferred from electronic annotation /// 0009308 // amine metabolic process // inferred from sequence or structural similarity /// 0010828 // positive regulation of glucose transport // inferred from direct assay /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0032094 // response to food // inferred from expression pattern /// 0042593 // glucose homeostasis // inferred from mutant phenotype /// 0042755 // eating behavior // inferred from mutant phenotype /// 0042981 // regulation of apoptosis // not recorded /// 0046838 // phosphorylated carbohydrate dephosphorylation // inferred from direct assay /// 0051156 // glucose 6-phosphate metabolic process // inferred from direct assay /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0055088 // lipid homeostasis // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0061136 // regulation of proteasomal protein catabolic process // not recorded 0000502 // proteasome complex // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0008537 // proteasome activator complex // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence or structural similarity 0002039 // p53 binding // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004346 // glucose-6-phosphatase activity // inferred from direct assay /// 0004346 // glucose-6-phosphatase activity // inferred from electronic annotation /// 0004346 // glucose-6-phosphatase activity // traceable author statement /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008131 // primary amine oxidase activity // inferred from electronic annotation /// 0008131 // primary amine oxidase activity // inferred from direct assay /// 0008131 // primary amine oxidase activity // inferred from sequence or structural similarity /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048038 // quinone binding // inferred from electronic annotation /// 0048038 // quinone binding // inferred from sequence or structural similarity /// 0061133 // endopeptidase activator activity // not recorded /// 0070215 // MDM2 binding // not recorded 1372507_at AA901093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901093 /DB_XREF=gi:4233592 /DB_XREF=UI-R-A1-do-b-12-0-UI.s1 /CLONE=UI-R-A1-do-b-12-0-UI /FEA=EST /CNT=17 /TID=Rn.2916.1 /TIER=Stack /STK=11 /UG=Rn.2916 /UG_TITLE=ESTs AA901093 T-cell leukemia translocation altered gene Tcta 306587 NM_001014005 1372508_at BE113266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113266 /DB_XREF=gi:8505371 /DB_XREF=UI-R-BJ1-awd-d-11-0-UI.s1 /CLONE=UI-R-BJ1-awd-d-11-0-UI /FEA=EST /CNT=16 /TID=Rn.6839.1 /TIER=Stack /STK=11 /UG=Rn.6839 /UG_TITLE=ESTs BE113266 trinucleotide repeat containing 6a Tnrc6a 308971 NM_001107549 0009267 // cellular response to starvation // not recorded /// 0035278 // negative regulation of translation involved in gene silencing by miRNA // not recorded 0035068 // micro-ribonucleoprotein complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1372509_at AI172024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172024 /DB_XREF=gi:4134693 /DB_XREF=EST218019 /CLONE=RMUBU02 /FEA=EST /CNT=16 /TID=Rn.22487.1 /TIER=Stack /STK=11 /UG=Rn.22487 /UG_TITLE=ESTs AI172024 1372510_at AI172302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172302 /DB_XREF=gi:3712342 /DB_XREF=EST218303 /CLONE=RMUBX56 /FEA=EST /CNT=16 /TID=Rn.2835.1 /TIER=Stack /STK=11 /UG=Rn.2835 /UG_TITLE=ESTs, Weakly similar to S43056 hypothetical protein - mouse (M.musculus) AI172302 sulfiredoxin 1 homolog (S. cerevisiae) Srxn1 296271 NM_001047858 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0008152 // metabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0016667 // oxidoreductase activity, acting on a sulfur group of donors // inferred from electronic annotation /// 0016667 // oxidoreductase activity, acting on a sulfur group of donors // not recorded /// 0032542 // sulfiredoxin activity // inferred from electronic annotation 1372511_at AI102612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102612 /DB_XREF=gi:3707338 /DB_XREF=EST211901 /CLONE=REMBP94 /FEA=EST /CNT=16 /TID=Rn.2920.1 /TIER=Stack /STK=11 /UG=Rn.2920 /UG_TITLE=ESTs AI102612 DAZ associated protein 2 Dazap2 300235 NM_001013107 0005515 // protein binding // inferred from electronic annotation 1372512_at BE113340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113340 /DB_XREF=gi:8505410 /DB_XREF=UI-R-BJ1-awd-h-04-0-UI.s1 /CLONE=UI-R-BJ1-awd-h-04-0-UI /FEA=EST /CNT=16 /TID=Rn.16521.1 /TIER=Stack /STK=11 /UG=Rn.16521 /UG_TITLE=ESTs, Highly similar to STXH_HUMAN Syntaxin 18 (H.sapiens) BE113340 syntaxin 18 Stx18 360953 NM_001012151 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1372513_at AI103616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103616 /DB_XREF=gi:3708143 /DB_XREF=EST212905 /CLONE=REMCE21 /FEA=EST /CNT=15 /TID=Rn.11488.1 /TIER=Stack /STK=11 /UG=Rn.11488 /UG_TITLE=ESTs, Weakly similar to plysia ras-related homolog A2 (Rattus norvegicus) (R.norvegicus) AI103616 ras-related C3 botulinum toxin substrate 1 Rac1 363875 NM_134366 0006184 // GTP catabolic process // not recorded /// 0006897 // endocytosis // not recorded /// 0006915 // apoptosis // not recorded /// 0006928 // cellular component movement // inferred from mutant phenotype /// 0006935 // chemotaxis // inferred from mutant phenotype /// 0006972 // hyperosmotic response // not recorded /// 0007010 // cytoskeleton organization // not recorded /// 0007155 // cell adhesion // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0007411 // axon guidance // not recorded /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0010592 // positive regulation of lamellipodium assembly // not recorded /// 0016358 // dendrite development // not recorded /// 0016477 // cell migration // not recorded /// 0016601 // Rac protein signal transduction // traceable author statement /// 0021799 // cerebral cortex radially oriented cell migration // not recorded /// 0021831 // embryonic olfactory bulb interneuron precursor migration // not recorded /// 0030032 // lamellipodium assembly // not recorded /// 0030036 // actin cytoskeleton organization // inferred from direct assay /// 0030334 // regulation of cell migration // not recorded /// 0030838 // positive regulation of actin filament polymerization // not recorded /// 0031529 // ruffle organization // not recorded /// 0034446 // substrate adhesion-dependent cell spreading // not recorded /// 0043552 // positive regulation of phosphoinositide 3-kinase activity // not recorded /// 0045453 // bone resorption // inferred from direct assay /// 0045740 // positive regulation of DNA replication // inferred from mutant phenotype /// 0051668 // localization within membrane // not recorded /// 0060071 // Wnt receptor signaling pathway, planar cell polarity pathway // not recorded /// 0060263 // regulation of respiratory burst // not recorded /// 0071542 // dopaminergic neuron differentiation // not recorded 0000139 // Golgi membrane // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0019897 // extrinsic to plasma membrane // not recorded /// 0030027 // lamellipodium // not recorded /// 0042470 // melanosome // inferred from electronic annotation /// 0042995 // cell projection // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0003924 // GTPase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0030742 // GTP-dependent protein binding // not recorded /// 0031996 // thioesterase binding // not recorded 1372514_s_at AA892303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892303 /DB_XREF=gi:4132148 /DB_XREF=EST196106 /CLONE=RKIAO80 /FEA=EST /CNT=15 /TID=Rn.3257.1 /TIER=Stack /STK=11 /UG=Rn.3257 /UG_TITLE=ESTs, Weakly similar to JC5533 scavenger receptor class B type I precursor - rat (R.norvegicus) AA892303 dynein, axonemal, light chain 4 Dnal4 300078 NM_001009666 0007017 // microtubule-based process // inferred from electronic annotation 0005813 // centrosome // not recorded /// 0005875 // microtubule associated complex // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0003777 // microtubule motor activity // not recorded /// 0003777 // microtubule motor activity // inferred from electronic annotation 1372515_at BI281177 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281177 /DB_XREF=gi:14930650 /DB_XREF=UI-R-CT0s-cat-c-05-0-UI.s1 /CLONE=UI-R-CT0s-cat-c-05-0-UI /FEA=EST /CNT=15 /TID=Rn.9403.1 /TIER=Stack /STK=11 /UG=Rn.9403 /UG_TITLE=ESTs BI281177 1372516_at AI317842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI317842 /DB_XREF=gi:4033109 /DB_XREF=EST234513 /CLONE=RPPAA55 /FEA=EST /CNT=15 /TID=Rn.8601.1 /TIER=Stack /STK=11 /UG=Rn.8601 /UG_TITLE=ESTs, Weakly similar to S62328 kinesin-like DNA binding protein KID (H.sapiens) AI317842 kinesin family member 22 Kif22 293502 NM_001009645 0006281 // DNA repair // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006855 // drug transmembrane transport // inferred from direct assay /// 0006855 // drug transmembrane transport // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0015695 // organic cation transport // inferred from direct assay /// 0015893 // drug transport // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0000785 // chromatin // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005819 // spindle // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005451 // monovalent cation:hydrogen antiporter activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0015238 // drug transmembrane transporter activity // inferred from direct assay /// 0015238 // drug transmembrane transporter activity // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation 1372517_at BI283851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283851 /DB_XREF=gi:14936001 /DB_XREF=UI-R-CX0s-ccx-e-01-0-UI.s1 /CLONE=UI-R-CX0s-ccx-e-01-0-UI /FEA=EST /CNT=15 /TID=Rn.2196.1 /TIER=Stack /STK=11 /UG=Rn.2196 /UG_TITLE=ESTs BI283851 peptidylprolyl isomerase (cyclophilin)-like 1 Ppil1 309651 NM_001034188 0006457 // protein folding // inferred from electronic annotation 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1372518_at AI176918 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176918 /DB_XREF=gi:3727556 /DB_XREF=EST220524 /CLONE=ROVBY57 /FEA=EST /CNT=15 /TID=Rn.9375.1 /TIER=Stack /STK=11 /UG=Rn.9375 /UG_TITLE=ESTs, Weakly similar to FBL5_RAT FIBULIN-5 PRECURSOR (FIBL-5) (DEVELOPMENTAL ARTERIES AND NEURAL CREST EGF-LIKE PROTEIN) (DANCE) (EMBRYONIC VASCULAR EGF REPEAT-CONTAINING PROTEIN) (EVEC) (R.norvegicus) AI176918 fibulin 1 Fbln1 315191 NM_001127547 0007566 // embryo implantation // inferred from expression pattern /// 0010952 // positive regulation of peptidase activity // not recorded /// 0030198 // extracellular matrix organization // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016504 // peptidase activator activity // not recorded 1372519_at AI169375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169375 /DB_XREF=gi:3705683 /DB_XREF=EST215219 /CLONE=RKIBR45 /FEA=EST /CNT=15 /TID=Rn.24203.1 /TIER=Stack /STK=11 /UG=Rn.24203 /UG_TITLE=ESTs AI169375 nucleoporin 93 Nup93 291874 NM_001011925 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005643 // nuclear pore // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372520_at AI172056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172056 /DB_XREF=gi:4134696 /DB_XREF=EST218051 /CLONE=RMUBU39 /FEA=EST /CNT=15 /TID=Rn.4067.1 /TIER=Stack /STK=11 /UG=Rn.4067 /UG_TITLE=ESTs AI172056 myeloid cell leukemia sequence 1 Mcl1 60430 NM_021846 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0034097 // response to cytokine stimulus // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046982 // protein heterodimerization activity // not recorded /// 0046983 // protein dimerization activity // inferred from physical interaction /// 0051400 // BH domain binding // inferred from physical interaction 1372521_at AI136709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136709 /DB_XREF=gi:3637486 /DB_XREF=UI-R-C2p-nw-a-09-0-UI.s1 /CLONE=UI-R-C2p-nw-a-09-0-UI /FEA=EST /CNT=15 /TID=Rn.22162.1 /TIER=Stack /STK=11 /UG=Rn.22162 /UG_TITLE=ESTs AI136709 Rho family GTPase 2 Rnd2 303553 NM_001010953 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005769 // early endosome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction 1372522_at AI556235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556235 /DB_XREF=gi:4488598 /DB_XREF=UI-R-C2p-rb-g-11-0-UI.s1 /CLONE=UI-R-C2p-rb-g-11-0-UI /FEA=EST /CNT=14 /TID=Rn.3951.1 /TIER=Stack /STK=11 /UG=Rn.3951 /UG_TITLE=ESTs AI556235 arginine and glutamate rich 1 Arglu1 290912 NM_001024972 1372523_at AA892770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892770 /DB_XREF=gi:3019649 /DB_XREF=EST196573 /CLONE=RKIAX13 /FEA=EST /CNT=14 /TID=Rn.8365.1 /TIER=Stack /STK=11 /UG=Rn.8365 /UG_TITLE=ESTs AA892770 glutamate-cysteine ligase, catalytic subunit Gclc 25283 NM_012815 0006534 // cysteine metabolic process // not recorded /// 0006534 // cysteine metabolic process // inferred from sequence or structural similarity /// 0006534 // cysteine metabolic process // inferred from electronic annotation /// 0006536 // glutamate metabolic process // not recorded /// 0006536 // glutamate metabolic process // inferred from sequence or structural similarity /// 0006536 // glutamate metabolic process // inferred from electronic annotation /// 0006749 // glutathione metabolic process // not recorded /// 0006749 // glutathione metabolic process // inferred from electronic annotation /// 0006750 // glutathione biosynthetic process // inferred from mutant phenotype /// 0006750 // glutathione biosynthetic process // not recorded /// 0006750 // glutathione biosynthetic process // inferred from sequence or structural similarity /// 0006750 // glutathione biosynthetic process // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from sequence or structural similarity /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from mutant phenotype /// 0006979 // response to oxidative stress // not recorded /// 0006979 // response to oxidative stress // inferred from sequence or structural similarity /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0009408 // response to heat // not recorded /// 0009408 // response to heat // inferred from sequence or structural similarity /// 0009408 // response to heat // inferred from electronic annotation /// 0009410 // response to xenobiotic stimulus // inferred from electronic annotation /// 0009410 // response to xenobiotic stimulus // not recorded /// 0009725 // response to hormone stimulus // not recorded /// 0009725 // response to hormone stimulus // inferred from sequence or structural similarity /// 0009725 // response to hormone stimulus // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0019852 // L-ascorbic acid metabolic process // inferred from electronic annotation /// 0019852 // L-ascorbic acid metabolic process // not recorded /// 0031397 // negative regulation of protein ubiquitination // inferred from electronic annotation /// 0031397 // negative regulation of protein ubiquitination // not recorded /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // inferred from mutant phenotype /// 0045454 // cell redox homeostasis // not recorded /// 0045454 // cell redox homeostasis // inferred from sequence or structural similarity /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0046685 // response to arsenic // inferred from electronic annotation /// 0046685 // response to arsenic // not recorded /// 0050880 // regulation of blood vessel size // not recorded /// 0050880 // regulation of blood vessel size // inferred from sequence or structural similarity /// 0050880 // regulation of blood vessel size // inferred from electronic annotation /// 0051409 // response to nitrosative stress // inferred from mutant phenotype /// 0051900 // regulation of mitochondrial depolarization // inferred from electronic annotation /// 0051900 // regulation of mitochondrial depolarization // not recorded 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0017109 // glutamate-cysteine ligase complex // inferred from direct assay /// 0017109 // glutamate-cysteine ligase complex // not recorded /// 0017109 // glutamate-cysteine ligase complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004357 // glutamate-cysteine ligase activity // inferred from mutant phenotype /// 0004357 // glutamate-cysteine ligase activity // not recorded /// 0004357 // glutamate-cysteine ligase activity // inferred from sequence or structural similarity /// 0004357 // glutamate-cysteine ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016595 // glutamate binding // not recorded /// 0016595 // glutamate binding // inferred from sequence or structural similarity /// 0016595 // glutamate binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0043531 // ADP binding // not recorded /// 0043531 // ADP binding // inferred from sequence or structural similarity /// 0043531 // ADP binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0050662 // coenzyme binding // not recorded /// 0050662 // coenzyme binding // inferred from sequence or structural similarity /// 0050662 // coenzyme binding // inferred from electronic annotation 1372524_at BG378238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378238 /DB_XREF=gi:13302710 /DB_XREF=UI-R-CV1-bvp-f-09-0-UI.s1 /CLONE=UI-R-CV1-bvp-f-09-0-UI /FEA=EST /CNT=14 /TID=Rn.11506.1 /TIER=Stack /STK=11 /UG=Rn.11506 /UG_TITLE=ESTs BG378238 1372525_at AI227721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227721 /DB_XREF=gi:3811608 /DB_XREF=EST224416 /CLONE=RBRCK62 /FEA=EST /CNT=14 /TID=Rn.19960.1 /TIER=Stack /STK=11 /UG=Rn.19960 /UG_TITLE=ESTs AI227721 FK506 binding protein 14 Fkbp14 362366 NM_001013210 0006457 // protein folding // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1372526_at BI278582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278582 /DB_XREF=gi:14925571 /DB_XREF=UI-R-CW0-bxn-d-10-0-UI.s1 /CLONE=UI-R-CW0-bxn-d-10-0-UI /FEA=EST /CNT=14 /TID=Rn.12799.1 /TIER=Stack /STK=11 /UG=Rn.12799 /UG_TITLE=ESTs BI278582 folliculin Flcn 303185 NM_199390 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372527_at BG380684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380684 /DB_XREF=gi:13305156 /DB_XREF=UI-R-CT0-bua-c-03-0-UI.s1 /CLONE=UI-R-CT0-bua-c-03-0-UI /FEA=EST /CNT=14 /TID=Rn.3210.1 /TIER=Stack /STK=11 /UG=Rn.3210 /UG_TITLE=ESTs, Weakly similar to RTN1_RAT RETICULON 1 (NEUROENDOCRINE-SPECIFIC PROTEIN) (S-REX) (R.norvegicus) BG380684 reticulon 2 Rtn2 308410 NM_201562 0005783 // endoplasmic reticulum // inferred from electronic annotation 1372528_at AI102069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102069 /DB_XREF=gi:3706903 /DB_XREF=EST211358 /CLONE=RBRBY54 /FEA=EST /CNT=14 /TID=Rn.13345.1 /TIER=Stack /STK=11 /UG=Rn.13345 /UG_TITLE=ESTs AI102069 1372529_at BE116914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116914 /DB_XREF=gi:8509059 /DB_XREF=UI-R-BS1-ayl-b-08-0-UI.s1 /CLONE=UI-R-BS1-ayl-b-08-0-UI /FEA=EST /CNT=14 /TID=Rn.12839.1 /TIER=Stack /STK=11 /UG=Rn.12839 /UG_TITLE=ESTs BE116914 1372530_at AA944190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944190 /DB_XREF=gi:3104106 /DB_XREF=EST199689 /CLONE=REMAD45 /FEA=EST /CNT=14 /TID=Rn.108.1 /TIER=Stack /STK=11 /UG=Rn.108 /UG_TITLE=ESTs AA944190 host cell factor C1 Hcfc1 363519 NM_001139507 0043254 // regulation of protein complex assembly // not recorded /// 0045449 // regulation of transcription // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0070688 // MLL5-L complex // not recorded /// 0071339 // MLL1 complex // not recorded 0003713 // transcription coactivator activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1372531_at BE106488 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106488 /DB_XREF=gi:8498590 /DB_XREF=UI-R-BO1-aso-e-12-0-UI.s1 /CLONE=UI-R-BO1-aso-e-12-0-UI /FEA=EST /CNT=14 /TID=Rn.2971.1 /TIER=Stack /STK=11 /UG=Rn.2971 /UG_TITLE=ESTs, Weakly similar to S55553 LAR-interacting protein LIP1b (H.sapiens) BE106488 PTPRF interacting protein, binding protein 2 (liprin beta 2) Ppfibp2 308918 NM_001100582 0015074 // DNA integration // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008907 // integrase activity // inferred from electronic annotation 1372532_at BI289477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289477 /DB_XREF=gi:14947088 /DB_XREF=UI-R-DK0-cfh-e-06-0-UI.s1 /CLONE=UI-R-DK0-cfh-e-06-0-UI /FEA=EST /CNT=14 /TID=Rn.19419.1 /TIER=Stack /STK=11 /UG=Rn.19419 /UG_TITLE=ESTs BI289477 phosphatidylinositol transfer protein, membrane-associated 2 Pitpnm2 304474 NM_001107139 0006810 // transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005625 // soluble fraction // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0046872 // metal ion binding // inferred from electronic annotation 1372533_at AI175790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175790 /DB_XREF=gi:4134818 /DB_XREF=EST219359 /CLONE=ROVBF45 /FEA=EST /CNT=14 /TID=Rn.8162.1 /TIER=Stack /STK=11 /UG=Rn.8162 /UG_TITLE=ESTs AI175790 ER degradation enhancer, mannosidase alpha-like 1 Edem1 297504 XM_001075943 /// XM_238366 0030433 // ER-associated protein catabolic process // not recorded 0016020 // membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded 0004559 // alpha-mannosidase activity // not recorded /// 0004571 // mannosyl-oligosaccharide 1,2-alpha-mannosidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051787 // misfolded protein binding // not recorded 1372534_at AW434092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434092 /DB_XREF=gi:6965399 /DB_XREF=UI-R-BJ0p-afd-b-09-0-UI.s1 /CLONE=UI-R-BJ0p-afd-b-09-0-UI /FEA=EST /CNT=14 /TID=Rn.3540.1 /TIER=Stack /STK=11 /UG=Rn.3540 /UG_TITLE=ESTs, Highly similar to RPCX MOUSE DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.0 KD POLYPEPTIDE (M.musculus) AW434092 mCG145114-like LOC100361574 100361574 XR_085879 /// XR_086296 0006350 // transcription // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation 1372535_at AI410203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410203 /DB_XREF=gi:4253707 /DB_XREF=EST238496 /CLONE=RKIDZ66 /FEA=EST /CNT=14 /TID=Rn.17312.1 /TIER=Stack /STK=11 /UG=Rn.17312 /UG_TITLE=ESTs AI410203 similar to RIKEN cDNA 2210012G02 LOC366431 366431 NM_001014260 0006350 // transcription // inferred from electronic annotation /// 0006354 // RNA elongation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1372536_at AI105042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105042 /DB_XREF=gi:4134317 /DB_XREF=EST214331 /CLONE=RHECM87 /FEA=EST /CNT=14 /TID=Rn.40456.1 /TIER=Stack /STK=11 /UG=Rn.40456 /UG_TITLE=ESTs, Weakly similar to YLC4_CAEEL HYPOTHETICAL 81.0 KD PROTEIN C35D10.4 IN CHROMOSOME III (C.elegans) AI105042 chaperone, ABC1 activity of bc1 complex homolog (S. pombe) Cabc1 360887 NM_001013185 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1372537_at BI289642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289642 /DB_XREF=gi:14947420 /DB_XREF=UI-R-DK0-cfi-d-06-0-UI.s1 /CLONE=UI-R-DK0-cfi-d-06-0-UI /FEA=EST /CNT=14 /TID=Rn.21773.1 /TIER=Stack /STK=11 /UG=Rn.21773 /UG_TITLE=ESTs BI289642 1372538_at BM389148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389148 /DB_XREF=gi:18189201 /DB_XREF=UI-R-DZ0-cko-k-01-0-UI.s1 /CLONE=UI-R-DZ0-cko-k-01-0-UI /FEA=EST /CNT=14 /TID=Rn.3737.1 /TIER=Stack /STK=11 /UG=Rn.3737 /UG_TITLE=ESTs BM389148 solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17 Slc25a17 300083 NM_001126269 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0005778 // peroxisomal membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372539_at AA801220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA801220 /DB_XREF=gi:2864175 /DB_XREF=EST190717 /CLONE=RPLAB30 /FEA=EST /CNT=22 /TID=Rn.3291.1 /TIER=Stack /STK=11 /UG=Rn.3291 /UG_TITLE=ESTs AA801220 1372540_at BG671872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671872 /DB_XREF=gi:13893971 /DB_XREF=DRNBZA06 /CLONE=DRNBZA06 /FEA=EST /CNT=18 /TID=Rn.34113.1 /TIER=Stack /STK=11 /UG=Rn.34113 /UG_TITLE=ESTs BG671872 ubiquitin-like domain containing CTD phosphatase 1 Ublcp1 360514 NM_001014117 0005634 // nucleus // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1372541_at BG374849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374849 /DB_XREF=gi:13299321 /DB_XREF=UI-R-CV1-bss-c-01-0-UI.s1 /CLONE=UI-R-CV1-bss-c-01-0-UI /FEA=EST /CNT=17 /TID=Rn.15198.1 /TIER=Stack /STK=11 /UG=Rn.15198 /UG_TITLE=ESTs BG374849 transmembrane protein 138 Tmem138 361728 NM_198777 0016021 // integral to membrane // inferred from electronic annotation 1372542_at BE113281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113281 /DB_XREF=gi:8505426 /DB_XREF=UI-R-BJ1-awe-a-08-0-UI.s1 /CLONE=UI-R-BJ1-awe-a-08-0-UI /FEA=EST /CNT=17 /TID=Rn.6495.1 /TIER=Stack /STK=11 /UG=Rn.6495 /UG_TITLE=ESTs BE113281 1372543_at BI282107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282107 /DB_XREF=gi:14932523 /DB_XREF=UI-R-CU0s-cbw-f-05-0-UI.s1 /CLONE=UI-R-CU0s-cbw-f-05-0-UI /FEA=EST /CNT=17 /TID=Rn.12007.1 /TIER=Stack /STK=11 /UG=Rn.12007 /UG_TITLE=ESTs, Weakly similar to Y54E5A.5.p (Caenorhabditis elegans) (C.elegans) BI282107 similar to RIKEN cDNA 2610029G23 RGD1562502 363485 NM_001108818 1372544_at AI410305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410305 /DB_XREF=gi:4253809 /DB_XREF=EST238598 /CLONE=RKIDK54 /FEA=EST /CNT=16 /TID=Rn.8301.1 /TIER=Stack /STK=11 /UG=Rn.8301 /UG_TITLE=ESTs AI410305 1372545_at AI411021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411021 /DB_XREF=gi:4254525 /DB_XREF=EST239315 /CLONE=RKIEG15 /FEA=EST /CNT=16 /TID=Rn.8150.1 /TIER=Stack /STK=11 /UG=Rn.8150 /UG_TITLE=ESTs AI411021 1372546_at BM390276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390276 /DB_XREF=gi:18190329 /DB_XREF=UI-R-CN1-cjq-a-16-0-UI.s1 /CLONE=UI-R-CN1-cjq-a-16-0-UI /FEA=EST /CNT=16 /TID=Rn.8789.1 /TIER=Stack /STK=11 /UG=Rn.8789 /UG_TITLE=ESTs, Moderately similar to S78100 MAPK-activated protein kinase (EC 2.7.1.-) 2 - mouse (fragment) (M.musculus) BM390276 mitogen-activated protein kinase-activated protein kinase 3 Mapkapk3 315994 NM_001012127 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1372547_at AI175034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175034 /DB_XREF=gi:4134761 /DB_XREF=EST218552 /CLONE=RMUCB34 /FEA=EST /CNT=15 /TID=Rn.15285.1 /TIER=Stack /STK=11 /UG=Rn.15285 /UG_TITLE=ESTs, Weakly similar to C56C10.7.p (Caenorhabditis elegans) (C.elegans) AI175034 similar to RIKEN cDNA 2410002O22 gene RGD1306583 294709 NM_001013908 1372548_at AI412018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412018 /DB_XREF=gi:4255522 /DB_XREF=EST240312 /CLONE=RKIEH17 /FEA=EST /CNT=14 /TID=Rn.21150.1 /TIER=Stack /STK=11 /UG=Rn.21150 /UG_TITLE=ESTs AI412018 cryptochrome 2 (photolyase-like) Cry2 170917 NM_133405 0006281 // DNA repair // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006606 // protein import into nucleus // not recorded /// 0007623 // circadian rhythm // inferred from expression pattern /// 0007623 // circadian rhythm // not recorded /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0018298 // protein-chromophore linkage // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003913 // DNA photolyase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0009881 // photoreceptor activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation 1372549_at AI409460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409460 /DB_XREF=gi:4252964 /DB_XREF=EST237752 /CLONE=RKIDV68 /FEA=EST /CNT=14 /TID=Rn.11718.1 /TIER=Stack /STK=11 /UG=Rn.11718 /UG_TITLE=ESTs AI409460 transmembrane protein 88 Tmem88 497936 NM_001128155 0016021 // integral to membrane // inferred from electronic annotation 1372550_at AI169278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169278 /DB_XREF=gi:3705586 /DB_XREF=EST215113 /CLONE=RKIBP64 /FEA=EST /CNT=14 /TID=Rn.11505.1 /TIER=Stack /STK=11 /UG=Rn.11505 /UG_TITLE=ESTs AI169278 1372551_at AI227743 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227743 /DB_XREF=gi:3811630 /DB_XREF=EST224438 /CLONE=RBRCK90 /FEA=EST /CNT=14 /TID=Rn.7680.1 /TIER=Stack /STK=11 /UG=Rn.7680 /UG_TITLE=ESTs, Highly similar to Fas-activated serinethreonine kinase (Mus musculus) (M.musculus) AI227743 Fas-activated serine/threonine kinase Fastk 296741 NM_001011967 0006915 // apoptosis // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0004672 // protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1372552_at AI102273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102273 /DB_XREF=gi:3707072 /DB_XREF=EST211562 /CLONE=RBRCB45 /FEA=EST /CNT=14 /TID=Rn.24424.1 /TIER=Stack /STK=11 /UG=Rn.24424 /UG_TITLE=ESTs AI102273 acyl-Coenzyme A binding domain containing 3 Acbd3 289312 NM_182843 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000062 // acyl-CoA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372553_at AI233205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233205 /DB_XREF=gi:3817085 /DB_XREF=EST229893 /CLONE=RKIDC19 /FEA=EST /CNT=14 /TID=Rn.7569.1 /TIER=Stack /STK=11 /UG=Rn.7569 /UG_TITLE=ESTs AI233205 similar to RIKEN cDNA 2610301B20; EST AI428449 MGC94199 362483 NM_001007746 1372554_at AA943110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943110 /DB_XREF=gi:3103026 /DB_XREF=EST198609 /CLONE=RBRAF21 /FEA=EST /CNT=14 /TID=Rn.7337.1 /TIER=Stack /STK=11 /UG=Rn.7337 /UG_TITLE=ESTs AA943110 1372555_at AI171778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171778 /DB_XREF=gi:4134659 /DB_XREF=EST217760 /CLONE=RMUBQ58 /FEA=EST /CNT=14 /TID=Rn.15371.1 /TIER=Stack /STK=11 /UG=Rn.15371 /UG_TITLE=ESTs AI171778 FLYWCH-type zinc finger 1 Flywch1 360488 XM_001056224 /// XM_340760 1372556_at AA924509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924509 /DB_XREF=gi:4235700 /DB_XREF=UI-R-A1-ed-b-10-0-UI.s1 /CLONE=UI-R-A1-ed-b-10-0-UI /FEA=EST /CNT=14 /TID=Rn.30672.1 /TIER=Stack /STK=11 /UG=Rn.30672 /UG_TITLE=ESTs, Highly similar to S53015 DNA-directed RNA polymerase (H.sapiens) AA924509 polymerase (RNA) II (DNA directed) polypeptide L Polr2l 502374 NM_001143911 0006351 // transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1372557_at AI409182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409182 /DB_XREF=gi:4252686 /DB_XREF=EST237474 /CLONE=RKIDO26 /FEA=EST /CNT=13 /TID=Rn.22421.1 /TIER=Stack /STK=11 /UG=Rn.22421 /UG_TITLE=ESTs, Weakly similar to ARF3_HUMAN ADP-RIBOSYLATION FACTOR (R.norvegicus) AI409182 ADP-ribosylation factor-like 6 Arl6 363760 NM_001108842 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016020 // membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1372558_at AI177404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177404 /DB_XREF=gi:3728042 /DB_XREF=EST221024 /CLONE=RPLBY70 /FEA=EST /CNT=13 /TID=Rn.12587.1 /TIER=Stack /STK=11 /UG=Rn.12587 /UG_TITLE=ESTs AI177404 NMDA receptor regulated 1 Narg1 310399 NM_001107674 0006474 // N-terminal protein amino acid acetylation // not recorded /// 0008152 // metabolic process // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008080 // N-acetyltransferase activity // not recorded /// 0016407 // acetyltransferase activity // not recorded /// 0043022 // ribosome binding // not recorded 1372559_at AI103527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103527 /DB_XREF=gi:3708061 /DB_XREF=EST212816 /CLONE=REMCD10 /FEA=EST /CNT=13 /TID=Rn.8915.1 /TIER=Stack /STK=11 /UG=Rn.8915 /UG_TITLE=ESTs, Highly similar to SL56_RAT SODIUM-DEPENDENT MULTIVITAMIN TRANSPORTER (NA(+)-DEPENDENT MULTIVITAMIN TRANSPORTER) (R.norvegicus) AI103527 Ng23 protein Ng23 406170 NM_001004069 1372560_at AW522495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522495 /DB_XREF=gi:7164880 /DB_XREF=UI-R-BO0-aha-a-12-0-UI.s1 /CLONE=UI-R-BO0-aha-a-12-0-UI /FEA=EST /CNT=13 /TID=Rn.27177.1 /TIER=Stack /STK=11 /UG=Rn.27177 /UG_TITLE=ESTs AW522495 1372561_at AI234095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234095 /DB_XREF=gi:3817975 /DB_XREF=EST230783 /CLONE=RLUCV15 /FEA=EST /CNT=13 /TID=Rn.12727.1 /TIER=Stack /STK=11 /UG=Rn.12727 /UG_TITLE=ESTs AI234095 small ArfGAP2 Smap2 298500 NM_001100669 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1372562_at AI236816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236816 /DB_XREF=gi:4136249 /DB_XREF=EST233378 /CLONE=ROVDK87 /FEA=EST /CNT=13 /TID=Rn.17865.1 /TIER=Stack /STK=11 /UG=Rn.17865 /UG_TITLE=ESTs AI236816 similar to RIKEN cDNA C030006K11 MGC94207 362946 NM_001007751 0005739 // mitochondrion // not recorded 1372563_at AA799488 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799488 /DB_XREF=gi:2862443 /DB_XREF=EST188985 /CLONE=RHEAB64 /FEA=EST /CNT=13 /TID=Rn.22211.1 /TIER=Stack /STK=11 /UG=Rn.22211 /UG_TITLE=ESTs AA799488 similar to D330021B20 protein RGD1308143 316685 1372564_at AI411375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411375 /DB_XREF=gi:4254879 /DB_XREF=EST239669 /CLONE=RKIES58 /FEA=EST /CNT=13 /TID=Rn.6783.1 /TIER=Stack /STK=11 /UG=Rn.6783 /UG_TITLE=ESTs AI411375 1372565_at BI274192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274192 /DB_XREF=gi:14884879 /DB_XREF=UI-R-CW0-bwg-a-12-0-UI.s1 /CLONE=UI-R-CW0-bwg-a-12-0-UI /FEA=EST /CNT=13 /TID=Rn.15228.1 /TIER=Stack /STK=11 /UG=Rn.15228 /UG_TITLE=ESTs, Highly similar to toll-associated serine protease (Mus musculus) (M.musculus) BI274192 HtrA serine peptidase 3 Htra3 360959 XM_001058037 /// XM_341237 0001558 // regulation of cell growth // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation 1372566_at AI412014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412014 /DB_XREF=gi:4255518 /DB_XREF=EST240308 /CLONE=RKIEJ45 /FEA=EST /CNT=13 /TID=Rn.1076.1 /TIER=Stack /STK=11 /UG=Rn.1076 /UG_TITLE=ESTs AI412014 mitochondrial carrier homolog 2 (C. elegans) Mtch2 295922 NM_001106488 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1372567_at BI274544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274544 /DB_XREF=gi:14885545 /DB_XREF=UI-R-CW0-bwl-a-11-0-UI.s1 /CLONE=UI-R-CW0-bwl-a-11-0-UI /FEA=EST /CNT=13 /TID=Rn.30496.1 /TIER=Stack /STK=11 /UG=Rn.30496 /UG_TITLE=ESTs, Moderately similar to T08701 hypothetical protein DKFZp564N123.1 (H.sapiens) BI274544 R3H domain and coiled-coil containing 1 R3hcc1 361064 XM_001069252 /// XM_341347 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1372568_at AI411270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411270 /DB_XREF=gi:4254774 /DB_XREF=EST239564 /CLONE=RKIEO81 /FEA=EST /CNT=13 /TID=Rn.2561.1 /TIER=Stack /STK=11 /UG=Rn.2561 /UG_TITLE=ESTs AI411270 1372569_at AI171676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171676 /DB_XREF=gi:3711716 /DB_XREF=EST217651 /CLONE=RMUBO20 /FEA=EST /CNT=13 /TID=Rn.6423.1 /TIER=Stack /STK=11 /UG=Rn.6423 /UG_TITLE=ESTs AI171676 four and a half LIM domains 3 Fhl3 313582 NM_001107979 0030036 // actin cytoskeleton organization // not recorded 0001725 // stress fiber // not recorded /// 0005634 // nucleus // not recorded /// 0030018 // Z disc // not recorded 0003779 // actin binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372570_at AI145892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145892 /DB_XREF=gi:3667691 /DB_XREF=UI-R-BT0-qg-e-01-0-UI.s1 /CLONE=UI-R-BT0-qg-e-01-0-UI /FEA=EST /CNT=13 /TID=Rn.23402.1 /TIER=Stack /STK=11 /UG=Rn.23402 /UG_TITLE=ESTs AI145892 ubiquitin specific peptidase 30 Usp30 304579 NM_001107153 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1372571_at AW143187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143187 /DB_XREF=gi:6163086 /DB_XREF=EST293483 /CLONE=RGIBF19 /FEA=EST /CNT=13 /TID=Rn.17581.1 /TIER=Stack /STK=11 /UG=Rn.17581 /UG_TITLE=ESTs, Weakly similar to T00268 hypothetical protein KIAA0597 (H.sapiens) AW143187 membrane-associated ring finger (C3HC4) 2 March2 362849 NM_001034108 0006897 // endocytosis // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372572_at AI009124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009124 /DB_XREF=gi:3222956 /DB_XREF=EST203575 /CLONE=REMBJ01 /FEA=EST /CNT=13 /TID=Rn.13335.1 /TIER=Stack /STK=11 /UG=Rn.13335 /UG_TITLE=ESTs AI009124 sialyltransferase 7F Siat7F 407765 NM_001015036 0006486 // protein glycosylation // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation 0008373 // sialyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1372573_at BI300206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300206 /DB_XREF=gi:14976486 /DB_XREF=UI-R-CV2-cic-b-08-0-UI.s1 /CLONE=UI-R-CV2-cic-b-08-0-UI /FEA=EST /CNT=13 /TID=Rn.66179.1 /TIER=Stack /STK=11 /UG=Rn.66179 /UG_TITLE=ESTs BI300206 1372574_at AW142018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142018 /DB_XREF=gi:6161877 /DB_XREF=EST292133 /CLONE=RGICT72 /FEA=EST /CNT=13 /TID=Rn.7120.1 /TIER=Stack /STK=11 /UG=Rn.7120 /UG_TITLE=ESTs AW142018 TEA domain family member 2 Tead2 308582 NM_001107512 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0035329 // hippo signaling cascade // not recorded /// 0035329 // hippo signaling cascade // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation 1372575_at AA892364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892364 /DB_XREF=gi:3019243 /DB_XREF=EST196167 /CLONE=RKIAP55 /FEA=EST /CNT=13 /TID=Rn.7741.1 /TIER=Stack /STK=11 /UG=Rn.7741 /UG_TITLE=ESTs AA892364 WW domain binding protein 11 Wbp11 297695 NM_001009661 0006364 // rRNA processing // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016607 // nuclear speck // not recorded 0005515 // protein binding // not recorded /// 0008599 // protein phosphatase type 1 regulator activity // not recorded /// 0050699 // WW domain binding // not recorded 1372576_at AI232347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232347 /DB_XREF=gi:3816227 /DB_XREF=EST229035 /CLONE=RKICA51 /FEA=EST /CNT=13 /TID=Rn.102.1 /TIER=Stack /STK=11 /UG=Rn.102 /UG_TITLE=ESTs AI232347 exonuclease 3'-5' domain containing 2 Exd2 362759 NM_001108715 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0008408 // 3'-5' exonuclease activity // inferred from electronic annotation 1372577_at AI411582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411582 /DB_XREF=gi:4255086 /DB_XREF=EST239876 /CLONE=ROVET08 /FEA=EST /CNT=13 /TID=Rn.7588.2 /TIER=Stack /STK=11 /UG=Rn.7588 /LL=114636 /UG_GENE=Zyx /UG_TITLE=zyxin AI411582 actin related protein 2/3 complex, subunit 4 Arpc4 297518 NM_001106615 0030041 // actin filament polymerization // inferred from electronic annotation 0005856 // cytoskeleton // inferred from electronic annotation /// 0005885 // Arp2/3 protein complex // not recorded 0005515 // protein binding // not recorded /// 0030674 // protein binding, bridging // not recorded 1372578_at AI704469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI704469 /DB_XREF=gi:4992369 /DB_XREF=UI-R-AC0-yo-c-11-0-UI.s1 /CLONE=UI-R-AC0-yo-c-11-0-UI /FEA=EST /CNT=13 /TID=Rn.12314.1 /TIER=Stack /STK=11 /UG=Rn.12314 /UG_TITLE=ESTs, Highly similar to SYV2_MOUSE VALYL-TRNA SYNTHETASE 2 (VALINE--TRNA LIGASE 2) (VALRS 2) (M.musculus) AI704469 valyl-tRNA synthetase Vars 25009 NM_053292 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006438 // valyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004832 // valine-tRNA ligase activity // inferred from direct assay /// 0004832 // valine-tRNA ligase activity // not recorded /// 0004832 // valine-tRNA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1372579_at BF288089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288089 /DB_XREF=gi:11219159 /DB_XREF=EST452680 /CLONE=RGIGP39 /FEA=EST /CNT=13 /TID=Rn.12225.1 /TIER=Stack /STK=11 /UG=Rn.12225 /UG_TITLE=ESTs BF288089 endoglin Eng 497010 NM_001010968 0001300 // chronological cell aging // not recorded /// 0001525 // angiogenesis // not recorded /// 0001569 // patterning of blood vessels // not recorded /// 0001570 // vasculogenesis // not recorded /// 0001666 // response to hypoxia // not recorded /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0001947 // heart looping // not recorded /// 0003084 // positive regulation of systemic arterial blood pressure // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from sequence or structural similarity /// 0007507 // heart development // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0016477 // cell migration // not recorded /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0022009 // central nervous system vasculogenesis // not recorded /// 0022617 // extracellular matrix disassembly // not recorded /// 0030513 // positive regulation of BMP signaling pathway // not recorded /// 0031953 // negative regulation of protein autophosphorylation // not recorded /// 0031960 // response to corticosteroid stimulus // inferred from expression pattern /// 0042060 // wound healing // not recorded /// 0045449 // regulation of transcription // not recorded /// 0048745 // smooth muscle tissue development // not recorded /// 0048844 // artery morphogenesis // not recorded /// 0048845 // venous blood vessel morphogenesis // not recorded /// 0048870 // cell motility // not recorded /// 0051001 // negative regulation of nitric-oxide synthase activity // not recorded /// 0060326 // cell chemotaxis // not recorded /// 0060394 // negative regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0070278 // extracellular matrix constituent secretion // inferred from mutant phenotype /// 0070483 // detection of hypoxia // not recorded 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005624 // membrane fraction // not recorded /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0016021 // integral to membrane // non-traceable author statement 0005024 // transforming growth factor beta receptor activity // not recorded /// 0005024 // transforming growth factor beta receptor activity // non-traceable author statement /// 0005072 // transforming growth factor beta receptor, cytoplasmic mediator activity // not recorded /// 0005114 // type II transforming growth factor beta receptor binding // not recorded /// 0005114 // type II transforming growth factor beta receptor binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0005534 // galactose binding // not recorded /// 0005539 // glycosaminoglycan binding // not recorded /// 0005539 // glycosaminoglycan binding // inferred from sequence or structural similarity /// 0034713 // type I transforming growth factor beta receptor binding // not recorded /// 0034713 // type I transforming growth factor beta receptor binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // not recorded /// 0050431 // transforming growth factor beta binding // not recorded 1372580_at BF283599 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283599 /DB_XREF=gi:11214669 /DB_XREF=EST448190 /CLONE=RGIEE44 /FEA=EST /CNT=13 /TID=Rn.6406.2 /TIER=Stack /STK=11 /UG=Rn.6406 /LL=94193 /UG_GENE=Madd /UG_TITLE=MAP-kinase activating death domain BF283599 MAP-kinase activating death domain Madd 94193 NM_053585 0000187 // activation of MAPK activity // not recorded /// 0000187 // activation of MAPK activity // inferred from sequence or structural similarity /// 0006915 // apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from sequence or structural similarity /// 0051726 // regulation of cell cycle // not recorded /// 0051726 // regulation of cell cycle // inferred from sequence or structural similarity 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017112 // Rab guanyl-nucleotide exchange factor activity // not recorded /// 0017112 // Rab guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity 1372581_at BF282487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282487 /DB_XREF=gi:11213557 /DB_XREF=EST447078 /CLONE=RGIDN94 /FEA=EST /CNT=17 /TID=Rn.54596.2 /TIER=Stack /STK=11 /UG=Rn.54596 /LL=84469 /UG_GENE=Maged1 /UG_TITLE=melanoma antigen, family D, 1 BF282487 SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) Snf8 287645 NM_001007804 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded 1372582_at AI407847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407847 /DB_XREF=gi:4251351 /DB_XREF=EST236137 /CLONE=ROVEC89 /FEA=EST /CNT=16 /TID=Rn.15589.1 /TIER=Stack /STK=11 /UG=Rn.15589 /UG_TITLE=ESTs AI407847 casein kinase 1, gamma 3 Csnk1g3 64823 NM_022855 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0001948 // glycoprotein binding // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0051219 // phosphoprotein binding // inferred from direct assay 1372583_at AI009094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009094 /DB_XREF=gi:3222926 /DB_XREF=EST203545 /CLONE=REMBI53 /FEA=EST /CNT=15 /TID=Rn.13877.1 /TIER=Stack /STK=11 /UG=Rn.13877 /UG_TITLE=ESTs AI009094 1372584_at BG672517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672517 /DB_XREF=gi:13894616 /DB_XREF=DRNCJG09 /CLONE=DRNCJG09 /FEA=EST /CNT=15 /TID=Rn.8173.1 /TIER=Stack /STK=11 /UG=Rn.8173 /UG_TITLE=ESTs BG672517 cannabinoid receptor interacting protein 1 Cnrip1 364208 NM_001014232 0005515 // protein binding // not recorded 1372585_at BM388445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388445 /DB_XREF=gi:18188498 /DB_XREF=UI-R-DZ0-ckm-c-09-0-UI.s1 /CLONE=UI-R-DZ0-ckm-c-09-0-UI /FEA=EST /CNT=15 /TID=Rn.12486.1 /TIER=Stack /STK=11 /UG=Rn.12486 /UG_TITLE=ESTs BM388445 1372586_at AI411995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411995 /DB_XREF=gi:4255499 /DB_XREF=EST240289 /CLONE=RKIEJ15 /FEA=EST /CNT=14 /TID=Rn.2339.1 /TIER=Stack /STK=11 /UG=Rn.2339 /UG_TITLE=ESTs AI411995 1372587_at AI172271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172271 /DB_XREF=gi:4134732 /DB_XREF=EST218272 /CLONE=RMUBX18 /FEA=EST /CNT=14 /TID=Rn.8542.1 /TIER=Stack /STK=11 /UG=Rn.8542 /UG_TITLE=ESTs AI172271 endomucin Emcn 295490 NM_001004228 0001525 // angiogenesis // inferred from sequence or structural similarity /// 0016337 // cell-cell adhesion // inferred from sequence or structural similarity /// 0030155 // regulation of cell adhesion // inferred from sequence or structural similarity 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0030246 // carbohydrate binding // inferred from sequence or structural similarity 1372588_at AA944403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944403 /DB_XREF=gi:3104319 /DB_XREF=EST199902 /CLONE=REMAG64 /FEA=EST /CNT=14 /TID=Rn.7405.1 /TIER=Stack /STK=11 /UG=Rn.7405 /UG_TITLE=ESTs AA944403 basophilic leukemia expressed protein BLES03 Bles03 266609 NM_001024233 /// NR_024190 0006413 // translational initiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation 1372589_at AI177689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177689 /DB_XREF=gi:3728327 /DB_XREF=EST221330 /CLONE=RPLCE59 /FEA=EST /CNT=14 /TID=Rn.12221.1 /TIER=Stack /STK=11 /UG=Rn.12221 /UG_TITLE=ESTs, Weakly similar to C35D10.5.p (Caenorhabditis elegans) (C.elegans) AI177689 similar to Basic FGF-repressed Zic-binding protein (mbFZb) LOC683512 683512 NM_001109446 1372590_at BM386449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386449 /DB_XREF=gi:18186502 /DB_XREF=UI-R-CN1-cjg-c-03-0-UI.s1 /CLONE=UI-R-CN1-cjg-c-03-0-UI /FEA=EST /CNT=14 /TID=Rn.3396.1 /TIER=Stack /STK=11 /UG=Rn.3396 /UG_TITLE=ESTs BM386449 1372591_at AI410700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410700 /DB_XREF=gi:4254204 /DB_XREF=EST238993 /CLONE=RHECS94 /FEA=EST /CNT=13 /TID=Rn.12974.1 /TIER=Stack /STK=11 /UG=Rn.12974 /UG_TITLE=ESTs, Highly similar to PM1_HUMAN PROTEIN PM (H.sapiens) AI410700 transmembrane protein 11 Tmem11 303196 NM_001164543 /// NM_001166165 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1372592_at AI411391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411391 /DB_XREF=gi:4254895 /DB_XREF=EST239685 /CLONE=RKIES76 /FEA=EST /CNT=13 /TID=Rn.13453.1 /TIER=Stack /STK=11 /UG=Rn.13453 /UG_TITLE=ESTs, Highly similar to T13964 probable histone deacetylase (EC 3.5.1.-) HDA2 - mouse (M.musculus) AI411391 histone deacetylase 6 Hdac6 84581 XM_001057931 /// XM_228753 0000209 // protein polyubiquitination // inferred from electronic annotation /// 0000209 // protein polyubiquitination // not recorded /// 0006476 // protein deacetylation // not recorded /// 0006476 // protein deacetylation // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006515 // misfolded or incompletely synthesized protein catabolic process // inferred from electronic annotation /// 0006515 // misfolded or incompletely synthesized protein catabolic process // not recorded /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0007026 // negative regulation of microtubule depolymerization // inferred from electronic annotation /// 0007026 // negative regulation of microtubule depolymerization // not recorded /// 0009636 // response to toxin // inferred from electronic annotation /// 0009636 // response to toxin // not recorded /// 0009967 // positive regulation of signal transduction // inferred from electronic annotation /// 0009967 // positive regulation of signal transduction // not recorded /// 0010033 // response to organic substance // not recorded /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010469 // regulation of receptor activity // inferred from electronic annotation /// 0010469 // regulation of receptor activity // not recorded /// 0010634 // positive regulation of epithelial cell migration // inferred from electronic annotation /// 0010634 // positive regulation of epithelial cell migration // not recorded /// 0010870 // positive regulation of receptor biosynthetic process // inferred from electronic annotation /// 0010870 // positive regulation of receptor biosynthetic process // not recorded /// 0016236 // macroautophagy // inferred from electronic annotation /// 0016236 // macroautophagy // not recorded /// 0016575 // histone deacetylation // inferred from electronic annotation /// 0016575 // histone deacetylation // not recorded /// 0032418 // lysosome localization // inferred from electronic annotation /// 0032418 // lysosome localization // not recorded /// 0034983 // peptidyl-lysine deacetylation // inferred from electronic annotation /// 0034983 // peptidyl-lysine deacetylation // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043162 // ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway // inferred from electronic annotation /// 0043162 // ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway // not recorded /// 0043241 // protein complex disassembly // not recorded /// 0043241 // protein complex disassembly // inferred from electronic annotation /// 0043242 // negative regulation of protein complex disassembly // not recorded /// 0043242 // negative regulation of protein complex disassembly // inferred from electronic annotation /// 0045861 // negative regulation of proteolysis // inferred from electronic annotation /// 0045861 // negative regulation of proteolysis // not recorded /// 0051788 // response to misfolded protein // not recorded /// 0051788 // response to misfolded protein // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0070301 // cellular response to hydrogen peroxide // inferred from electronic annotation /// 0070301 // cellular response to hydrogen peroxide // not recorded /// 0070842 // aggresome assembly // inferred from electronic annotation /// 0070842 // aggresome assembly // not recorded /// 0070845 // polyubiquitinated misfolded protein transport // inferred from electronic annotation /// 0070845 // polyubiquitinated misfolded protein transport // not recorded /// 0070846 // Hsp90 deacetylation // inferred from electronic annotation /// 0070846 // Hsp90 deacetylation // not recorded /// 0070848 // response to growth factor stimulus // inferred from electronic annotation /// 0070848 // response to growth factor stimulus // not recorded /// 0071218 // cellular response to misfolded protein // inferred from electronic annotation /// 0071218 // cellular response to misfolded protein // not recorded /// 0090035 // positive regulation of cellular chaperone-mediated protein complex assembly // inferred from electronic annotation /// 0090035 // positive regulation of cellular chaperone-mediated protein complex assembly // not recorded /// 0090042 // tubulin deacetylation // inferred from electronic annotation /// 0090042 // tubulin deacetylation // not recorded 0000118 // histone deacetylase complex // inferred from electronic annotation /// 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005874 // microtubule // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // not recorded /// 0005875 // microtubule associated complex // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // not recorded /// 0005901 // caveola // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0016234 // inclusion body // not recorded /// 0016234 // inclusion body // inferred from electronic annotation /// 0016235 // aggresome // inferred from electronic annotation /// 0016235 // aggresome // not recorded /// 0030286 // dynein complex // inferred from electronic annotation /// 0030286 // dynein complex // not recorded /// 0031252 // cell leading edge // inferred from electronic annotation /// 0031252 // cell leading edge // not recorded /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0004407 // histone deacetylase activity // inferred from electronic annotation /// 0004407 // histone deacetylase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0031593 // polyubiquitin binding // inferred from electronic annotation /// 0031593 // polyubiquitin binding // not recorded /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded /// 0042903 // tubulin deacetylase activity // inferred from electronic annotation /// 0042903 // tubulin deacetylase activity // not recorded /// 0043014 // alpha-tubulin binding // inferred from electronic annotation /// 0043014 // alpha-tubulin binding // not recorded /// 0043130 // ubiquitin binding // not recorded /// 0043130 // ubiquitin binding // inferred from electronic annotation /// 0048156 // tau protein binding // inferred from electronic annotation /// 0048156 // tau protein binding // not recorded /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // not recorded /// 0051879 // Hsp90 protein binding // inferred from electronic annotation /// 0051879 // Hsp90 protein binding // not recorded /// 0070840 // dynein complex binding // inferred from electronic annotation /// 0070840 // dynein complex binding // not recorded 1372593_at AI137283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137283 /DB_XREF=gi:3638060 /DB_XREF=UI-R-C2p-ol-a-02-0-UI.s1 /CLONE=UI-R-C2p-ol-a-02-0-UI /FEA=EST /CNT=13 /TID=Rn.19775.1 /TIER=Stack /STK=11 /UG=Rn.19775 /UG_TITLE=ESTs, Weakly similar to TC17 RAT TRANSCRIPTION FACTOR 17 (R.norvegicus) AI137283 zinc finger protein 110 Zfp110 308362 NM_001024775 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372594_at AI233721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233721 /DB_XREF=gi:3817601 /DB_XREF=EST230409 /CLONE=RKIDJ31 /FEA=EST /CNT=13 /TID=Rn.3336.1 /TIER=Stack /STK=11 /UG=Rn.3336 /UG_TITLE=ESTs AI233721 Sumo1/sentrin/SMT3 specific peptidase 5 Senp5 303874 XM_002724729 /// XM_221369 0006508 // proteolysis // inferred from electronic annotation 0008234 // cysteine-type peptidase activity // inferred from electronic annotation 1372595_at BF284889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284889 /DB_XREF=gi:11215959 /DB_XREF=EST449480 /CLONE=RGIEX47 /FEA=EST /CNT=13 /TID=Rn.3970.1 /TIER=Stack /STK=11 /UG=Rn.3970 /UG_TITLE=ESTs, Moderately similar to JC7186 alpha-actinin-4 - rat (R.norvegicus) BF284889 actinin alpha 2 Actn2 291245 NM_001170325 0006936 // muscle contraction // not recorded /// 0010469 // regulation of receptor activity // not recorded /// 0030035 // microspike assembly // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0048041 // focal adhesion assembly // not recorded /// 0051289 // protein homotetramerization // not recorded 0005730 // nucleolus // not recorded /// 0005829 // cytosol // not recorded /// 0005925 // focal adhesion // not recorded /// 0015629 // actin cytoskeleton // not recorded /// 0030018 // Z disc // not recorded /// 0030175 // filopodium // not recorded /// 0030864 // cortical actin cytoskeleton // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded /// 0030375 // thyroid hormone receptor coactivator activity // not recorded /// 0031432 // titin binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0046983 // protein dimerization activity // not recorded /// 0051015 // actin filament binding // not recorded /// 0051370 // ZASP binding // not recorded /// 0051374 // FATZ 1 binding // not recorded /// 0070080 // titin Z domain binding // not recorded 1372596_at BI284774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284774 /DB_XREF=gi:14937753 /DB_XREF=UI-R-CX0s-ccs-a-10-0-UI.s1 /CLONE=UI-R-CX0s-ccs-a-10-0-UI /FEA=EST /CNT=13 /TID=Rn.100.1 /TIER=Stack /STK=11 /UG=Rn.100 /UG_TITLE=ESTs, Highly similar to T42648 hypothetical protein DKFZp434C1415.1 (H.sapiens) BI284774 similar to RIKEN cDNA 1110007L15 RGD1311660 288518 NM_001163320 0005515 // protein binding // not recorded 1372597_at BE113348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113348 /DB_XREF=gi:8505418 /DB_XREF=UI-R-BJ1-awd-h-12-0-UI.s1 /CLONE=UI-R-BJ1-awd-h-12-0-UI /FEA=EST /CNT=13 /TID=Rn.3154.1 /TIER=Stack /STK=11 /UG=Rn.3154 /UG_TITLE=ESTs, Highly similar to S78418 ribosomal protein L32, mitochondrial - rat (R.norvegicus) BE113348 mitochondrial ribosomal protein L14 Mrpl14 301250 NM_001106890 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1372598_at BE112738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112738 /DB_XREF=gi:8504843 /DB_XREF=UI-R-BJ1-avo-c-05-0-UI.s1 /CLONE=UI-R-BJ1-avo-c-05-0-UI /FEA=EST /CNT=13 /TID=Rn.23379.1 /TIER=Stack /STK=11 /UG=Rn.23379 /UG_TITLE=ESTs BE112738 similar to 1190005I06Rik protein RGD1309651 361424 XM_001078912 /// XM_341702 1372599_at BI290559 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290559 /DB_XREF=gi:14949242 /DB_XREF=UI-R-DK0-cgd-f-08-0-UI.s1 /CLONE=UI-R-DK0-cgd-f-08-0-UI /FEA=EST /CNT=13 /TID=Rn.7854.1 /TIER=Stack /STK=11 /UG=Rn.7854 /UG_TITLE=ESTs, Weakly similar to FLAP RAT 5-LIPOXYGENASE ACTIVATING PROTEIN (R.norvegicus) BI290559 microsomal glutathione S-transferase 2 Mgst2 295037 NM_001106430 0006691 // leukotriene metabolic process // inferred from electronic annotation /// 0006750 // glutathione biosynthetic process // not recorded /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0019370 // leukotriene biosynthetic process // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005886 // plasma membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0004364 // glutathione transferase activity // inferred from direct assay /// 0004364 // glutathione transferase activity // not recorded /// 0004464 // leukotriene-C4 synthase activity // inferred from direct assay /// 0004464 // leukotriene-C4 synthase activity // not recorded /// 0004602 // glutathione peroxidase activity // inferred from direct assay /// 0008047 // enzyme activator activity // inferred from electronic annotation 1372600_at BI289613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289613 /DB_XREF=gi:14947366 /DB_XREF=UI-R-DK0-cfi-a-10-0-UI.s1 /CLONE=UI-R-DK0-cfi-a-10-0-UI /FEA=EST /CNT=13 /TID=Rn.11793.1 /TIER=Stack /STK=11 /UG=Rn.11793 /UG_TITLE=ESTs, Moderately similar to T17239 hypothetical protein DKFZp434B027.1 (H.sapiens) BI289613 F-box protein 31 Fbxo31 498959 NM_001044259 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from sequence or structural similarity /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0008054 // cyclin catabolic process // not recorded /// 0008054 // cyclin catabolic process // inferred from sequence or structural similarity /// 0008054 // cyclin catabolic process // inferred from electronic annotation /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0031571 // mitotic cell cycle G1/S DNA damage checkpoint // not recorded /// 0031571 // mitotic cell cycle G1/S DNA damage checkpoint // inferred from sequence or structural similarity /// 0031571 // mitotic cell cycle G1/S DNA damage checkpoint // inferred from electronic annotation 0019005 // SCF ubiquitin ligase complex // not recorded /// 0019005 // SCF ubiquitin ligase complex // inferred from sequence or structural similarity /// 0019005 // SCF ubiquitin ligase complex // inferred from electronic annotation 0030332 // cyclin binding // inferred from electronic annotation /// 0030332 // cyclin binding // not recorded 1372601_at BM391471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391471 /DB_XREF=gi:18191524 /DB_XREF=UI-R-DY0-ckr-m-23-0-UI.s1 /CLONE=UI-R-DY0-ckr-m-23-0-UI /FEA=EST /CNT=12 /TID=Rn.30491.1 /TIER=Stack /STK=11 /UG=Rn.30491 /UG_TITLE=ESTs, Highly similar to ATF5_MOUSE Cyclic-AMP-dependent transcription factor ATF-5 (Activating transcription factor 5) (Transcription factor ATFx) (Transcription factor-like protein ODA-10) (M.musculus) BM391471 activating transcription factor 5 Atf5 282840 NM_172336 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048712 // negative regulation of astrocyte differentiation // inferred from mutant phenotype /// 0050768 // negative regulation of neurogenesis // inferred from direct assay /// 0051726 // regulation of cell cycle // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1372602_at BI295979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295979 /DB_XREF=gi:14959965 /DB_XREF=UI-R-DK0-cfd-a-04-0-UI.s1 /CLONE=UI-R-DK0-cfd-a-04-0-UI /FEA=EST /CNT=12 /TID=Rn.1935.1 /TIER=Stack /STK=11 /UG=Rn.1935 /UG_TITLE=ESTs BI295979 starch binding domain 1 Stbd1 305234 NM_001013988 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation 1372603_at BM386692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386692 /DB_XREF=gi:18186745 /DB_XREF=UI-R-CN1-cjg-p-23-0-UI.s1 /CLONE=UI-R-CN1-cjg-p-23-0-UI /FEA=EST /CNT=12 /TID=Rn.15416.1 /TIER=Stack /STK=11 /UG=Rn.15416 /UG_TITLE=ESTs, Weakly similar to S55024 nebulin, skeletal muscle (H.sapiens) BM386692 protein kinase C and casein kinase substrate in neurons 3 Pacsin3 311187 NM_001009966 0045806 // negative regulation of endocytosis // not recorded /// 0051044 // positive regulation of membrane protein ectodomain proteolysis // not recorded 0005737 // cytoplasm // not recorded /// 0005802 // trans-Golgi network // not recorded 0005515 // protein binding // not recorded /// 0008092 // cytoskeletal protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1372604_at BI289459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289459 /DB_XREF=gi:14947052 /DB_XREF=UI-R-DK0-cfh-c-09-0-UI.s1 /CLONE=UI-R-DK0-cfh-c-09-0-UI /FEA=EST /CNT=12 /TID=Rn.2438.1 /TIER=Stack /STK=11 /UG=Rn.2438 /UG_TITLE=ESTs BI289459 0006869 // lipid transport // inferred from electronic annotation /// 0042157 // lipoprotein metabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0008289 // lipid binding // inferred from electronic annotation 1372605_at AA925258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925258 /DB_XREF=gi:4236449 /DB_XREF=UI-R-A1-ee-e-08-0-UI.s1 /CLONE=UI-R-A1-ee-e-08-0-UI /FEA=EST /CNT=12 /TID=Rn.7892.1 /TIER=Stack /STK=11 /UG=Rn.7892 /UG_TITLE=ESTs AA925258 GATA zinc finger domain containing 1 Gatad1 500005 XM_001068512 /// XM_575359 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1372606_at BM390528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390528 /DB_XREF=gi:18190581 /DB_XREF=UI-R-CN1-cjr-a-21-0-UI.s1 /CLONE=UI-R-CN1-cjr-a-21-0-UI /FEA=EST /CNT=12 /TID=Rn.16408.1 /TIER=Stack /STK=11 /UG=Rn.16408 /UG_TITLE=ESTs BM390528 1372607_at BM384157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384157 /DB_XREF=gi:18184210 /DB_XREF=UI-R-DZ0-cks-b-18-0-UI.s1 /CLONE=UI-R-DZ0-cks-b-18-0-UI /FEA=EST /CNT=12 /TID=Rn.9591.1 /TIER=Stack /STK=11 /UG=Rn.9591 /UG_TITLE=ESTs, Highly similar to NUB2_MOUSE Nucleotide binding protein 2 (NBP 2) (M.musculus) BM384157 nucleotide binding protein 2 Nubp2 287125 NM_001011891 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 1372608_at BM388814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388814 /DB_XREF=gi:18188867 /DB_XREF=UI-R-DZ0-ckn-o-19-0-UI.s1 /CLONE=UI-R-DZ0-ckn-o-19-0-UI /FEA=EST /CNT=12 /TID=Rn.1877.1 /TIER=Stack /STK=11 /UG=Rn.1877 /UG_TITLE=ESTs, Highly similar to polymyositisscleroderma autoantigen 2 (Mus musculus) (M.musculus) BM388814 rCG30986-like LOC100366273 100366273 XM_002726656 /// XM_002726657 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0044237 // cellular metabolic process // inferred from electronic annotation 0000176 // nuclear exosome (RNase complex) // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0008408 // 3'-5' exonuclease activity // inferred from electronic annotation 1372609_at AI236198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236198 /DB_XREF=gi:3829704 /DB_XREF=EST232760 /CLONE=ROVDC58 /FEA=EST /CNT=12 /TID=Rn.783.3 /TIER=Stack /STK=11 /UG=Rn.783 /LL=25181 /UG_GENE=Bgn /UG_TITLE=Small proteoglycan I (biglycan), bone (BSPG1) (bonecartilage proteclycan 1 precursor) AI236198 protein phosphatase 2, regulatory subunit B', delta isoform Ppp2r5d 363193 XM_001062510 /// XM_001065844 0007165 // signal transduction // inferred from electronic annotation 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008601 // protein phosphatase type 2A regulator activity // inferred from electronic annotation 1372610_at BI274349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274349 /DB_XREF=gi:14885196 /DB_XREF=UI-R-CW0-bwh-h-04-0-UI.s1 /CLONE=UI-R-CW0-bwh-h-04-0-UI /FEA=EST /CNT=12 /TID=Rn.17244.1 /TIER=Stack /STK=11 /UG=Rn.17244 /UG_TITLE=ESTs, Weakly similar to PROLYL 4-HYDROXYLASE ALPHA SUBUNIT PRECURSOR (R.norvegicus) BI274349 prolyl 4-hydroxylase, alpha polypeptide II P4ha2 360526 NM_001108275 0018401 // peptidyl-proline hydroxylation to 4-hydroxy-L-proline // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation 0004656 // procollagen-proline 4-dioxygenase activity // inferred from electronic annotation /// 0004656 // procollagen-proline 4-dioxygenase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation 1372611_at BM384497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384497 /DB_XREF=gi:18184550 /DB_XREF=UI-R-CN1-cjs-o-09-0-UI.s2 /CLONE=UI-R-CN1-cjs-o-09-0-UI /FEA=EST /CNT=12 /TID=Rn.21005.1 /TIER=Stack /STK=11 /UG=Rn.21005 /UG_TITLE=ESTs, Weakly similar to T27773 hypothetical protein ZK20.4 - Caenorhabditis elegans (C.elegans) BM384497 similar to RIKEN cDNA 2010305A19 RGD1305274 298377 NM_001106674 0005488 // binding // inferred from electronic annotation 1372612_at BG372973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372973 /DB_XREF=gi:13269510 /DB_XREF=UI-R-CV1-bsb-a-11-0-UI.s1 /CLONE=UI-R-CV1-bsb-a-11-0-UI /FEA=EST /CNT=12 /TID=Rn.16758.1 /TIER=Stack /STK=11 /UG=Rn.16758 /UG_TITLE=ESTs BG372973 dynein light chain LC8-type 2 Dynll2 140734 NM_080697 0006810 // transport // inferred from electronic annotation /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0008039 // synaptic target recognition // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016459 // myosin complex // inferred from electronic annotation /// 0016459 // myosin complex // not recorded /// 0030286 // dynein complex // inferred from electronic annotation 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from direct assay 1372613_at AI232784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232784 /DB_XREF=gi:3816664 /DB_XREF=EST229472 /CLONE=RKICG51 /FEA=EST /CNT=12 /TID=Rn.3651.1 /TIER=Stack /STK=11 /UG=Rn.3651 /UG_TITLE=ESTs, Weakly similar to S11021 2,4-dienoyl-CoA reductase (R.norvegicus) AI232784 3-hydroxybutyrate dehydrogenase, type 2 Bdh2 295458 NM_001106473 0006635 // fatty acid beta-oxidation // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0019290 // siderophore biosynthetic process // not recorded /// 0019290 // siderophore biosynthetic process // inferred from sequence or structural similarity /// 0042168 // heme metabolic process // inferred from sequence or structural similarity /// 0055072 // iron ion homeostasis // not recorded /// 0055072 // iron ion homeostasis // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0003858 // 3-hydroxybutyrate dehydrogenase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016628 // oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor // not recorded /// 0016628 // oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor // inferred from sequence or structural similarity /// 0051287 // NAD or NADH binding // not recorded 1372614_at BF390044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390044 /DB_XREF=gi:11374886 /DB_XREF=UI-R-BS2-bdr-f-05-0-UI.s1 /CLONE=UI-R-BS2-bdr-f-05-0-UI /FEA=EST /CNT=12 /TID=Rn.17957.1 /TIER=Stack /STK=11 /UG=Rn.17957 /UG_TITLE=ESTs BF390044 similar to mKIAA1797 protein RGD1311849 313346 XM_001053590 /// XM_233144 0005488 // binding // inferred from electronic annotation 1372615_at AI070137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070137 /DB_XREF=gi:3396388 /DB_XREF=UI-R-Y0-lu-f-09-0-UI.s1 /CLONE=UI-R-Y0-lu-f-09-0-UI /FEA=EST /CNT=12 /TID=Rn.19962.1 /TIER=Stack /STK=11 /UG=Rn.19962 /UG_TITLE=ESTs AI070137 amine oxidase, copper containing 3 (vascular adhesion protein 1) Aoc3 29473 NM_031582 0002523 // leukocyte migration involved in inflammatory response // inferred from mutant phenotype /// 0002675 // positive regulation of acute inflammatory response // inferred from mutant phenotype /// 0002687 // positive regulation of leukocyte migration // inferred from mutant phenotype /// 0006950 // response to stress // inferred from mutant phenotype /// 0007155 // cell adhesion // not recorded /// 0007155 // cell adhesion // inferred from sequence or structural similarity /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0008217 // regulation of blood pressure // inferred from mutant phenotype /// 0009308 // amine metabolic process // inferred from electronic annotation /// 0009308 // amine metabolic process // not recorded /// 0009308 // amine metabolic process // inferred from sequence or structural similarity /// 0010828 // positive regulation of glucose transport // inferred from direct assay /// 0042755 // eating behavior // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from electronic annotation 0005507 // copper ion binding // inferred from electronic annotation /// 0008131 // primary amine oxidase activity // inferred from direct assay /// 0008131 // primary amine oxidase activity // inferred from electronic annotation /// 0008131 // primary amine oxidase activity // not recorded /// 0008131 // primary amine oxidase activity // inferred from sequence or structural similarity /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048038 // quinone binding // inferred from electronic annotation /// 0048038 // quinone binding // not recorded /// 0048038 // quinone binding // inferred from sequence or structural similarity 1372616_at AI144796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144796 /DB_XREF=gi:3666595 /DB_XREF=UI-R-BT0-pr-h-03-0-UI.s1 /CLONE=UI-R-BT0-pr-h-03-0-UI /FEA=EST /CNT=12 /TID=Rn.27687.1 /TIER=Stack /STK=11 /UG=Rn.27687 /UG_TITLE=ESTs AI144796 1372617_at BM385989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385989 /DB_XREF=gi:18186042 /DB_XREF=UI-R-DN1-ckg-o-02-0-UI.s1 /CLONE=UI-R-DN1-ckg-o-02-0-UI /FEA=EST /CNT=12 /TID=Rn.24354.1 /TIER=Stack /STK=11 /UG=Rn.24354 /UG_TITLE=ESTs BM385989 BTB (POZ) domain containing 2 Btbd2 500793 XM_001076264 /// XM_576181 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372618_at AI407147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407147 /DB_XREF=gi:4250651 /DB_XREF=EST235435 /CLONE=ROVDS68 /FEA=EST /CNT=12 /TID=Rn.17709.1 /TIER=Stack /STK=11 /UG=Rn.17709 /UG_TITLE=ESTs AI407147 similar to hypothetical protein FLJ13045 RGD1307615 362084 NM_001108573 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1372619_at AI172185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172185 /DB_XREF=gi:3712225 /DB_XREF=EST218180 /CLONE=RMUBW01 /FEA=EST /CNT=12 /TID=Rn.22268.1 /TIER=Stack /STK=11 /UG=Rn.22268 /UG_TITLE=ESTs, Highly similar to NOF1 (H.sapiens) AI172185 mitochondrial ribosomal protein L49 Mrpl49 309176 NM_001047883 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1372620_at AI008642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008642 /DB_XREF=gi:4132917 /DB_XREF=EST203093 /CLONE=REMBB13 /FEA=EST /CNT=12 /TID=Rn.13833.1 /TIER=Stack /STK=11 /UG=Rn.13833 /UG_TITLE=ESTs, Weakly similar to LANP RAT LEUCINE-RICH ACIDIC NUCLEAR PROTEIN (R.norvegicus) AI008642 acidic (leucine-rich) nuclear phosphoprotein 32 family, member E Anp32e 361999 NM_001013200 0050790 // regulation of catalytic activity // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0019212 // phosphatase inhibitor activity // not recorded 1372621_at AI179588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179588 /DB_XREF=gi:3730226 /DB_XREF=EST223310 /CLONE=RSPCJ29 /FEA=EST /CNT=12 /TID=Rn.22919.1 /TIER=Stack /STK=11 /UG=Rn.22919 /UG_TITLE=ESTs AI179588 family with sequence similarity 176, member B Fam176b 362597 NM_001108679 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1372622_at AW520770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520770 /DB_XREF=gi:7163148 /DB_XREF=UI-R-BJ0p-agh-c-10-0-UI.s1 /CLONE=UI-R-BJ0p-agh-c-10-0-UI /FEA=EST /CNT=12 /TID=Rn.35964.1 /TIER=Stack /STK=11 /UG=Rn.35964 /UG_TITLE=ESTs AW520770 similar to RIKEN cDNA 6530418L21 RGD1560778 316001 NM_001108187 1372623_at BE101435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101435 /DB_XREF=gi:8493350 /DB_XREF=UI-R-BJ1-auj-a-02-0-UI.s1 /CLONE=UI-R-BJ1-auj-a-02-0-UI /FEA=EST /CNT=12 /TID=Rn.35645.1 /TIER=Stack /STK=11 /UG=Rn.35645 /UG_TITLE=ESTs BE101435 1372624_at BF551377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551377 /DB_XREF=gi:11661107 /DB_XREF=UI-R-C0-io-d-02-0-UI.r1 /CLONE=UI-R-C0-io-d-02-0-UI /FEA=EST /CNT=12 /TID=Rn.3350.1 /TIER=Stack /STK=11 /UG=Rn.3350 /UG_TITLE=ESTs BF551377 anoctamin 6 Ano6 315272 NM_001108108 1372625_at AA851663 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851663 /DB_XREF=gi:2939203 /DB_XREF=EST194431 /CLONE=RPLAL17 /FEA=EST /CNT=12 /TID=Rn.12844.1 /TIER=Stack /STK=11 /UG=Rn.12844 /UG_TITLE=ESTs AA851663 protein phosphatase 1, regulatory (inhibitor) subunit 12C Ppp1r12c 499076 NM_001191946 /// XM_001071078 /// XM_574359 1372626_at AI231999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231999 /DB_XREF=gi:3815879 /DB_XREF=EST228687 /CLONE=RHECR12 /FEA=EST /CNT=12 /TID=Rn.24825.1 /TIER=Stack /STK=11 /UG=Rn.24825 /UG_TITLE=ESTs, Weakly similar to TD53_MOUSE TUMOR PROTEIN D53 (MD53) (D52-LIKE 1) (M.musculus) AI231999 tumor protein D52-like 1 Tpd52l1 689256 NM_001044295 0000086 // G2/M transition of mitotic cell cycle // inferred from electronic annotation /// 0000086 // G2/M transition of mitotic cell cycle // not recorded /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // inferred from electronic annotation /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // not recorded /// 0046330 // positive regulation of JNK cascade // inferred from electronic annotation /// 0046330 // positive regulation of JNK cascade // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008656 // caspase activator activity // inferred from electronic annotation /// 0008656 // caspase activator activity // not recorded /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1372627_at BI299197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299197 /DB_XREF=gi:14975477 /DB_XREF=UI-R-CV2-chs-d-03-0-UI.s1 /CLONE=UI-R-CV2-chs-d-03-0-UI /FEA=EST /CNT=12 /TID=Rn.3433.1 /TIER=Stack /STK=11 /UG=Rn.3433 /UG_TITLE=ESTs, Moderately similar to suppressor of G2 allele of skp1 homolog (H.sapiens) BI299197 SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) Sugt1 290408 NM_001013051 0005488 // binding // inferred from electronic annotation 1372628_at AA800277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800277 /DB_XREF=gi:2863232 /DB_XREF=EST189774 /CLONE=RHEAN32 /FEA=EST /CNT=12 /TID=Rn.6307.1 /TIER=Stack /STK=11 /UG=Rn.6307 /UG_TITLE=ESTs, Weakly similar to CLATHRIN COAT ASSEMBLY PROTEIN AP17 (R.norvegicus) AA800277 adaptor-related protein complex AP-4, sigma 1 Ap4s1 366618 NM_001130999 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 1372629_at BF285818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285818 /DB_XREF=gi:11216888 /DB_XREF=EST450409 /CLONE=RGIFK37 /FEA=EST /CNT=12 /TID=Rn.8477.1 /TIER=Stack /STK=11 /UG=Rn.8477 /UG_TITLE=ESTs BF285818 coronin, actin binding protein, 2B Coro2b 300768 XM_001074062 /// XM_217183 1372630_at AA891828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891828 /DB_XREF=gi:3018707 /DB_XREF=EST195631 /CLONE=RKIAH33 /FEA=EST /CNT=12 /TID=Rn.16629.2 /TIER=Stack /STK=11 /UG=Rn.16629 /LL=84352 /UG_GENE=Col1a2 /UG_TITLE=procollagen, type I, alpha 2 AA891828 RAD23 homolog A (S. cerevisiae) Rad23a 361381 NM_001013190 0006289 // nucleotide-excision repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003684 // damaged DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372631_at AI170596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170596 /DB_XREF=gi:3710636 /DB_XREF=EST216530 /CLONE=RMUAY57 /FEA=EST /CNT=12 /TID=Rn.14940.1 /TIER=Stack /STK=11 /UG=Rn.14940 /UG_TITLE=ESTs AI170596 thymidine kinase 1, soluble Tk1 24834 NM_052800 0001889 // liver development // inferred from expression pattern /// 0006260 // DNA replication // inferred from electronic annotation /// 0009636 // response to toxin // inferred from expression pattern /// 0014856 // skeletal muscle cell proliferation // inferred from expression pattern /// 0016310 // phosphorylation // not recorded /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0046104 // thymidine metabolic process // inferred from direct assay /// 0046688 // response to copper ion // inferred from expression pattern /// 0048565 // digestive tract development // inferred from expression pattern /// 0051414 // response to cortisol stimulus // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0060138 // fetal process involved in parturition // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004797 // thymidine kinase activity // inferred from electronic annotation /// 0004797 // thymidine kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1372632_at BF418703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418703 /DB_XREF=gi:11406692 /DB_XREF=UI-R-BJ2-bql-a-06-0-UI.s1 /CLONE=UI-R-BJ2-bql-a-06-0-UI /FEA=EST /CNT=12 /TID=Rn.63781.1 /TIER=Stack /STK=11 /UG=Rn.63781 /UG_TITLE=ESTs BF418703 membrane-associated ring finger (C3HC4) 9 March9 679272 NM_001100601 0008270 // zinc ion binding // inferred from electronic annotation 1372633_at AI178531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178531 /DB_XREF=gi:3729169 /DB_XREF=EST222207 /CLONE=RPLCS32 /FEA=EST /CNT=12 /TID=Rn.7964.1 /TIER=Stack /STK=11 /UG=Rn.7964 /UG_TITLE=ESTs AI178531 spastic paraplegia 20 (Troyer syndrome) homolog (human) Spg20 295053 NM_001106433 0005737 // cytoplasm // not recorded 0031625 // ubiquitin protein ligase binding // not recorded 1372634_at AI009334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009334 /DB_XREF=gi:3223166 /DB_XREF=EST203785 /CLONE=RHEBD54 /FEA=EST /CNT=12 /TID=Rn.1834.1 /TIER=Stack /STK=11 /UG=Rn.1834 /UG_TITLE=ESTs AI009334 ADP-ribosylhydrolase like 2 Adprhl2 362600 NM_001108680 0016787 // hydrolase activity // inferred from electronic annotation 1372635_at BF282163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282163 /DB_XREF=gi:11213233 /DB_XREF=EST446754 /CLONE=RGIDF06 /FEA=EST /CNT=12 /TID=Rn.25201.1 /TIER=Stack /STK=11 /UG=Rn.25201 /UG_TITLE=ESTs BF282163 GTPase activating protein (SH3 domain) binding protein 1 G3bp1 171092 NM_133565 0006810 // transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372636_at AI007924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI007924 /DB_XREF=gi:3221756 /DB_XREF=EST202375 /CLONE=RBRAZ15 /FEA=EST /CNT=12 /TID=Rn.2496.1 /TIER=Stack /STK=11 /UG=Rn.2496 /UG_TITLE=ESTs AI007924 Rab40c, member RAS oncogene family Rab40c 359728 NM_182675 0001881 // receptor recycling // non-traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0042552 // myelination // non-traceable author statement 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // inferred from direct assay 1372637_at AI169241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169241 /DB_XREF=gi:3705549 /DB_XREF=EST215076 /CLONE=RKIBP21 /FEA=EST /CNT=12 /TID=Rn.14890.1 /TIER=Stack /STK=11 /UG=Rn.14890 /UG_TITLE=ESTs, Weakly similar to PN0109 keratin-like protein - rat (R.norvegicus) AI169241 similar to trophinin isoform 1 LOC683751 683751 XM_001067331 1372638_at BG371454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371454 /DB_XREF=gi:13267991 /DB_XREF=UI-R-CW0-bvv-c-12-0-UI.s1 /CLONE=UI-R-CW0-bvv-c-12-0-UI /FEA=EST /CNT=12 /TID=Rn.268.1 /TIER=Stack /STK=11 /UG=Rn.268 /UG_TITLE=ESTs BG371454 Rho guanine nucleotide exchange factor (GEF7) Arhgef7 114559 NM_001113521 /// NM_001113522 /// NM_053740 0006915 // apoptosis // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from direct assay /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from sequence or structural similarity /// 0043615 // astrocyte cell migration // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005925 // focal adhesion // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // traceable author statement /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1372639_at AA800245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800245 /DB_XREF=gi:2863200 /DB_XREF=EST189742 /CLONE=RHEAM89 /FEA=EST /CNT=12 /TID=Rn.6303.1 /TIER=Stack /STK=11 /UG=Rn.6303 /UG_TITLE=ESTs, Weakly similar to T09013 RING finger protein Fxy - mouse (M.musculus) AA800245 tripartite motif-containing 54 Trim54 362708 NM_001013217 0007026 // negative regulation of microtubule depolymerization // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // not recorded /// 0030018 // Z disc // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372640_at BI277758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277758 /DB_XREF=gi:14923940 /DB_XREF=UI-R-CZ0-byb-b-09-0-UI.s1 /CLONE=UI-R-CZ0-byb-b-09-0-UI /FEA=EST /CNT=12 /TID=Rn.9448.1 /TIER=Stack /STK=11 /UG=Rn.9448 /UG_TITLE=ESTs BI277758 peptidase inhibitor 16 Pi16 294312 NM_001170481 0005576 // extracellular region // inferred from electronic annotation 1372641_at AW434261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434261 /DB_XREF=gi:6965568 /DB_XREF=UI-R-BJ0p-afw-b-06-0-UI.s1 /CLONE=UI-R-BJ0p-afw-b-06-0-UI /FEA=EST /CNT=12 /TID=Rn.23649.1 /TIER=Stack /STK=11 /UG=Rn.23649 /UG_TITLE=ESTs AW434261 Alpha-kinase 3 Alpk3 365298 NM_001191895 /// XM_001066959 /// XM_344916 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007507 // heart development // not recorded 0005634 // nucleus // not recorded 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1372642_at BE113397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113397 /DB_XREF=gi:8505502 /DB_XREF=UI-R-BJ1-awe-h-04-0-UI.s1 /CLONE=UI-R-BJ1-awe-h-04-0-UI /FEA=EST /CNT=12 /TID=Rn.13357.1 /TIER=Stack /STK=11 /UG=Rn.13357 /UG_TITLE=ESTs BE113397 1372643_at BE110569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110569 /DB_XREF=gi:8502674 /DB_XREF=UI-R-BJ1-avt-e-07-0-UI.s1 /CLONE=UI-R-BJ1-avt-e-07-0-UI /FEA=EST /CNT=16 /TID=Rn.1362.1 /TIER=Stack /STK=11 /UG=Rn.1362 /UG_TITLE=ESTs, Moderately similar to PROTEIN 4.1 (M.musculus) BE110569 erythrocyte membrane protein band 4.1-like 2 Epb4.1l2 309557 XM_001053351 /// XM_220117 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0019898 // extrinsic to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0030507 // spectrin binding // not recorded /// 0042731 // PH domain binding // not recorded 1372644_at BI282137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282137 /DB_XREF=gi:14932583 /DB_XREF=UI-R-CU0s-cbx-a-06-0-UI.s1 /CLONE=UI-R-CU0s-cbx-a-06-0-UI /FEA=EST /CNT=15 /TID=Rn.2859.1 /TIER=Stack /STK=11 /UG=Rn.2859 /UG_TITLE=ESTs BI282137 similar to CG14286-PA LOC686765 686765 XM_001075602 1372645_at AI233095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233095 /DB_XREF=gi:3816975 /DB_XREF=EST229783 /CLONE=RKICK73 /FEA=EST /CNT=15 /TID=Rn.7053.1 /TIER=Stack /STK=11 /UG=Rn.7053 /UG_TITLE=ESTs, Weakly similar to YG2Q_YEAST HYPOTHETICAL 38.8 KD PROTEIN IN MIC1-SRB5 INTERGENIC REGION (S.cerevisiae) AI233095 presenilin associated, rhomboid-like Parl 287979 NM_001035249 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1372646_at BF418649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418649 /DB_XREF=gi:11406638 /DB_XREF=UI-R-BJ2-bqi-d-04-0-UI.s1 /CLONE=UI-R-BJ2-bqi-d-04-0-UI /FEA=EST /CNT=14 /TID=Rn.16593.1 /TIER=Stack /STK=11 /UG=Rn.16593 /UG_TITLE=ESTs BF418649 similar to RIKEN cDNA 1500015O10 RGD1305645 363225 XM_001060972 /// XM_343562 0005634 // nucleus // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 1372647_at BM388957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388957 /DB_XREF=gi:18189010 /DB_XREF=UI-R-DZ0-ckn-b-06-0-UI.s1 /CLONE=UI-R-DZ0-ckn-b-06-0-UI /FEA=EST /CNT=13 /TID=Rn.65510.1 /TIER=Stack /STK=11 /UG=Rn.65510 /UG_TITLE=ESTs, Highly similar to PARG_HUMAN PROLARGIN PRECURSOR (H.sapiens) BM388957 proline arginine-rich end leucine-rich repeat protein-like LOC100363743 100363743 XM_002724867 0005515 // protein binding // inferred from electronic annotation 1372648_at BI291338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291338 /DB_XREF=gi:14950784 /DB_XREF=UI-R-CV2-cgo-g-06-0-UI.s1 /CLONE=UI-R-CV2-cgo-g-06-0-UI /FEA=EST /CNT=13 /TID=Rn.25008.1 /TIER=Stack /STK=11 /UG=Rn.25008 /UG_TITLE=ESTs BI291338 1372649_at BM390305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390305 /DB_XREF=gi:18190358 /DB_XREF=UI-R-CN1-cjq-g-04-0-UI.s1 /CLONE=UI-R-CN1-cjq-g-04-0-UI /FEA=EST /CNT=13 /TID=Rn.11594.1 /TIER=Stack /STK=11 /UG=Rn.11594 /UG_TITLE=ESTs BM390305 heat shock protein family, member 7 (cardiovascular) Hspb7 50565 NM_031607 0006950 // response to stress // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0009408 // response to heat // inferred from direct assay /// 0009408 // response to heat // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0015030 // Cajal body // inferred from electronic annotation 0005515 // protein binding // not recorded 1372650_at BI296334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296334 /DB_XREF=gi:14960667 /DB_XREF=UI-R-DK0-cez-b-09-0-UI.s1 /CLONE=UI-R-DK0-cez-b-09-0-UI /FEA=EST /CNT=13 /TID=Rn.11811.1 /TIER=Stack /STK=11 /UG=Rn.11811 /UG_TITLE=ESTs BI296334 1372651_at AI144726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144726 /DB_XREF=gi:3666525 /DB_XREF=UI-R-BT0-po-c-02-0-UI.s1 /CLONE=UI-R-BT0-po-c-02-0-UI /FEA=EST /CNT=13 /TID=Rn.3034.1 /TIER=Stack /STK=11 /UG=Rn.3034 /UG_TITLE=ESTs AI144726 1372652_at BM386443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386443 /DB_XREF=gi:18186496 /DB_XREF=UI-R-CN1-cjg-a-13-0-UI.s1 /CLONE=UI-R-CN1-cjg-a-13-0-UI /FEA=EST /CNT=13 /TID=Rn.19646.1 /TIER=Stack /STK=11 /UG=Rn.19646 /UG_TITLE=ESTs BM386443 forkhead box O4 Foxo4 302415 NM_001106943 0000080 // G1 phase of mitotic cell cycle // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0007095 // mitotic cell cycle G2/M transition DNA damage checkpoint // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008286 // insulin receptor signaling pathway // not recorded /// 0016525 // negative regulation of angiogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0051151 // negative regulation of smooth muscle cell differentiation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0019899 // enzyme binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1372653_at BI276210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276210 /DB_XREF=gi:14920904 /DB_XREF=UI-R-CX0-bxf-d-05-0-UI.s1 /CLONE=UI-R-CX0-bxf-d-05-0-UI /FEA=EST /CNT=13 /TID=Rn.3241.1 /TIER=Stack /STK=11 /UG=Rn.3241 /UG_TITLE=ESTs, Highly similar to ARF3_HUMAN ADP-RIBOSYLATION FACTOR (R.norvegicus) BI276210 FK506 binding protein 11 Fkbp11 300211 NM_001013105 0006457 // protein folding // inferred from electronic annotation 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1372654_at BI285918 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285918 /DB_XREF=gi:14940048 /DB_XREF=UI-R-CX0s-ccp-d-02-0-UI.s1 /CLONE=UI-R-CX0s-ccp-d-02-0-UI /FEA=EST /CNT=12 /TID=Rn.13824.1 /TIER=Stack /STK=11 /UG=Rn.13824 /UG_TITLE=ESTs BI285918 EPS8-like 2 Eps8l2 361674 NM_001108508 1372655_at BG380323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380323 /DB_XREF=gi:13304795 /DB_XREF=UI-R-CS0-btv-g-05-0-UI.s1 /CLONE=UI-R-CS0-btv-g-05-0-UI /FEA=EST /CNT=12 /TID=Rn.14791.1 /TIER=Stack /STK=11 /UG=Rn.14791 /UG_TITLE=ESTs BG380323 1372656_at BI282899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282899 /DB_XREF=gi:14934122 /DB_XREF=UI-R-CW0s-ccc-f-09-0-UI.s1 /CLONE=UI-R-CW0s-ccc-f-09-0-UI /FEA=EST /CNT=12 /TID=Rn.16995.1 /TIER=Stack /STK=11 /UG=Rn.16995 /UG_TITLE=ESTs, Moderately similar to SNXF_HUMAN SORTING NEXIN 15 (H.sapiens) BI282899 sorting nexin 15 Snx15 293691 NM_001024752 0006810 // transport // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1372657_at BM391494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391494 /DB_XREF=gi:18191547 /DB_XREF=UI-R-DY0-ckr-c-06-0-UI.s1 /CLONE=UI-R-DY0-ckr-c-06-0-UI /FEA=EST /CNT=12 /TID=Rn.41520.2 /TIER=Stack /STK=11 /UG=Rn.41520 /UG_TITLE=ESTs BM391494 transmembrane protein 106C Tmem106c 315286 NM_001008358 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1372658_at BG373779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373779 /DB_XREF=gi:13270316 /DB_XREF=UI-R-CV1-bsh-g-08-0-UI.s1 /CLONE=UI-R-CV1-bsh-g-08-0-UI /FEA=EST /CNT=12 /TID=Rn.46362.1 /TIER=Stack /STK=11 /UG=Rn.46362 /UG_TITLE=ESTs BG373779 synemin, intermediate filament protein Synm 308709 NM_001134858 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005882 // intermediate filament // inferred from direct assay /// 0005882 // intermediate filament // not recorded /// 0005882 // intermediate filament // inferred from electronic annotation /// 0005912 // adherens junction // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0043034 // costamere // inferred from electronic annotation /// 0043034 // costamere // not recorded /// 0060053 // neurofilament cytoskeleton // inferred from electronic annotation /// 0060053 // neurofilament cytoskeleton // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008307 // structural constituent of muscle // inferred from electronic annotation /// 0008307 // structural constituent of muscle // not recorded /// 0017166 // vinculin binding // inferred from electronic annotation /// 0017166 // vinculin binding // not recorded /// 0019215 // intermediate filament binding // inferred from electronic annotation /// 0019215 // intermediate filament binding // not recorded 1372659_at BE113269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113269 /DB_XREF=gi:8505374 /DB_XREF=UI-R-BJ1-awd-e-03-0-UI.s1 /CLONE=UI-R-BJ1-awd-e-03-0-UI /FEA=EST /CNT=12 /TID=Rn.1104.1 /TIER=Stack /STK=11 /UG=Rn.1104 /UG_TITLE=ESTs, Highly similar to T34540 hypothetical protein DKFZp434L1021.1 (H.sapiens) BE113269 similar to potassium channel modulatory factor 1 LOC684322 684322 NM_001128192 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1372660_at AI180420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180420 /DB_XREF=gi:3731058 /DB_XREF=EST224166 /CLONE=RSPCX48 /FEA=EST /CNT=12 /TID=Rn.9430.1 /TIER=Stack /STK=11 /UG=Rn.9430 /UG_TITLE=ESTs AI180420 tubulin, gamma complex associated protein 3 Tubgcp3 306599 NM_001107323 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0007020 // microtubule nucleation // inferred from electronic annotation 0000922 // spindle pole // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005814 // centriole // inferred from electronic annotation /// 0005814 // centriole // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005827 // polar microtubule // inferred from electronic annotation /// 0005827 // polar microtubule // not recorded /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043015 // gamma-tubulin binding // inferred from electronic annotation /// 0043015 // gamma-tubulin binding // not recorded 1372661_at AI406314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406314 /DB_XREF=gi:4249818 /DB_XREF=EST234600 /CLONE=RBRDM53 /FEA=EST /CNT=12 /TID=Rn.32013.1 /TIER=Stack /STK=11 /UG=Rn.32013 /UG_TITLE=ESTs, Weakly similar to T43493 hypothetical protein DKFZp434C119.1 (H.sapiens) AI406314 transducin (beta)-like 3 Tbl3 287120 NM_001008277 0006364 // rRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0032040 // small-subunit processome // inferred from electronic annotation 1372662_at AI176698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176698 /DB_XREF=gi:3727336 /DB_XREF=EST220291 /CLONE=ROVBV67 /FEA=EST /CNT=12 /TID=Rn.7800.1 /TIER=Stack /STK=11 /UG=Rn.7800 /UG_TITLE=ESTs AI176698 F-box protein 34 Fbxo34 305830 NM_001107257 1372663_at BI289419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289419 /DB_XREF=gi:14946971 /DB_XREF=UI-R-DK0-cfg-g-05-0-UI.s1 /CLONE=UI-R-DK0-cfg-g-05-0-UI /FEA=EST /CNT=12 /TID=Rn.22009.1 /TIER=Stack /STK=11 /UG=Rn.22009 /UG_TITLE=ESTs, Weakly similar to PSS1_HUMAN PHOSPHATIDYLSERINE SYNTHASE I (H.sapiens) BI289419 phosphatidylserine synthase 2 Ptdss2 293620 NM_001106316 0006659 // phosphatidylserine biosynthetic process // inferred from electronic annotation /// 0006659 // phosphatidylserine biosynthetic process // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 0003882 // CDP-diacylglycerol-serine O-phosphatidyltransferase activity // inferred from electronic annotation /// 0003882 // CDP-diacylglycerol-serine O-phosphatidyltransferase activity // not recorded 1372664_at BM384229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384229 /DB_XREF=gi:18184282 /DB_XREF=UI-R-DZ0-cks-c-03-0-UI.s1 /CLONE=UI-R-DZ0-cks-c-03-0-UI /FEA=EST /CNT=12 /TID=Rn.14615.1 /TIER=Stack /STK=11 /UG=Rn.14615 /UG_TITLE=ESTs, Highly similar to TRA2 MOUSE TNF RECEPTOR ASSOCIATED FACTOR 2 (M.musculus) BM384229 Tnf receptor-associated factor 2 Traf2 311786 NM_001107815 0002726 // positive regulation of T cell cytokine production // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007250 // activation of NF-kappaB-inducing kinase activity // not recorded /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0030163 // protein catabolic process // not recorded /// 0032743 // positive regulation of interleukin-2 production // not recorded /// 0033209 // tumor necrosis factor-mediated signaling pathway // inferred from mutant phenotype /// 0033209 // tumor necrosis factor-mediated signaling pathway // not recorded /// 0034351 // negative regulation of glial cell apoptosis // inferred from mutant phenotype /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043507 // positive regulation of JUN kinase activity // not recorded /// 0046328 // regulation of JNK cascade // not recorded /// 0051023 // regulation of immunoglobulin secretion // not recorded /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051291 // protein heterooligomerization // inferred from physical interaction /// 0051865 // protein autoubiquitination // not recorded /// 0070207 // protein homotrimerization // not recorded /// 0070534 // protein K63-linked ubiquitination // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005938 // cell cortex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction /// 0046625 // sphingolipid binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1372665_at AI230228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230228 /DB_XREF=gi:3814115 /DB_XREF=EST226923 /CLONE=REMCT87 /FEA=EST /CNT=12 /TID=Rn.30218.1 /TIER=Stack /STK=11 /UG=Rn.30218 /UG_TITLE=ESTs, Weakly similar to SERC_HUMAN PHOSPHOSERINE AMINOTRANSFERASE (H.sapiens) AI230228 phosphoserine aminotransferase 1 Psat1 293820 NM_198738 0006564 // L-serine biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004648 // O-phospho-L-serine:2-oxoglutarate aminotransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1372666_at BI284861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284861 /DB_XREF=gi:14937925 /DB_XREF=UI-R-CX0s-cct-b-05-0-UI.s1 /CLONE=UI-R-CX0s-cct-b-05-0-UI /FEA=EST /CNT=11 /TID=Rn.1873.1 /TIER=Stack /STK=11 /UG=Rn.1873 /UG_TITLE=ESTs BI284861 transmembrane anterior posterior transformation 1 Tapt1 305386 XM_001059604 /// XM_223500 0001701 // in utero embryonic development // not recorded /// 0009791 // post-embryonic development // not recorded /// 0048706 // embryonic skeletal system development // not recorded 1372667_at AI170752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170752 /DB_XREF=gi:3710792 /DB_XREF=EST216691 /CLONE=RMUBB04 /FEA=EST /CNT=11 /TID=Rn.16571.1 /TIER=Stack /STK=11 /UG=Rn.16571 /UG_TITLE=ESTs AI170752 similar to RIKEN cDNA 1110059E24 RGD1359158 361740 NM_001007737 1372668_at BI289676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289676 /DB_XREF=gi:14947503 /DB_XREF=UI-R-DK0-cfi-g-09-0-UI.s1 /CLONE=UI-R-DK0-cfi-g-09-0-UI /FEA=EST /CNT=11 /TID=Rn.3966.1 /TIER=Stack /STK=11 /UG=Rn.3966 /UG_TITLE=ESTs BI289676 LIM domains containing 1 Limd1 316101 NM_001112737 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1372669_at BF404426 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404426 /DB_XREF=gi:11392401 /DB_XREF=UI-R-CA1-bif-b-08-0-UI.s1 /CLONE=UI-R-CA1-bif-b-08-0-UI /FEA=EST /CNT=11 /TID=Rn.63325.1 /TIER=Stack /STK=11 /UG=Rn.63325 /UG_TITLE=ESTs BF404426 1372670_at BI281686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281686 /DB_XREF=gi:14931675 /DB_XREF=UI-R-CT0s-cav-c-08-0-UI.s1 /CLONE=UI-R-CT0s-cav-c-08-0-UI /FEA=EST /CNT=11 /TID=Rn.13688.1 /TIER=Stack /STK=11 /UG=Rn.13688 /UG_TITLE=ESTs BI281686 similar to hypothetical protein FLJ21827 RGD1307682 300675 NM_001024760 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0005932 // microtubule basal body // inferred from electronic annotation /// 0031512 // motile primary cilium // inferred from electronic annotation /// 0031512 // motile primary cilium // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372671_at BI284293 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284293 /DB_XREF=gi:14936837 /DB_XREF=UI-R-CX0s-ccq-d-11-0-UI.s1 /CLONE=UI-R-CX0s-ccq-d-11-0-UI /FEA=EST /CNT=11 /TID=Rn.790.1 /TIER=Stack /STK=11 /UG=Rn.790 /UG_TITLE=ESTs BI284293 riboflavin kinase Rfk 499328 NM_001014106 0009231 // riboflavin biosynthetic process // inferred from electronic annotation 0008531 // riboflavin kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1372672_at AI407095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407095 /DB_XREF=gi:4250599 /DB_XREF=EST235383 /CLONE=ROVDT15 /FEA=EST /CNT=11 /TID=Rn.9220.1 /TIER=Stack /STK=11 /UG=Rn.9220 /UG_TITLE=ESTs, Moderately similar to T46864 nicotinate-nucleotide pyrophosphorylase (H.sapiens) AI407095 quinolinate phosphoribosyltransferase Qprt 293504 NM_001009646 0008152 // metabolic process // inferred from electronic annotation /// 0009435 // NAD biosynthetic process // inferred from direct assay /// 0009435 // NAD biosynthetic process // inferred from electronic annotation /// 0019363 // pyridine nucleotide biosynthetic process // inferred from electronic annotation /// 0019674 // NAD metabolic process // not recorded /// 0034213 // quinolinate catabolic process // inferred from electronic annotation /// 0034213 // quinolinate catabolic process // not recorded /// 0046874 // quinolinate metabolic process // inferred from direct assay /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0051259 // protein oligomerization // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004514 // nicotinate-nucleotide diphosphorylase (carboxylating) activity // inferred from direct assay /// 0004514 // nicotinate-nucleotide diphosphorylase (carboxylating) activity // not recorded /// 0004514 // nicotinate-nucleotide diphosphorylase (carboxylating) activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1372673_at AW433528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433528 /DB_XREF=gi:6964800 /DB_XREF=UI-R-BJ0p-aey-b-07-0-UI.s1 /CLONE=UI-R-BJ0p-aey-b-07-0-UI /FEA=EST /CNT=11 /TID=Rn.9418.1 /TIER=Stack /STK=11 /UG=Rn.9418 /UG_TITLE=ESTs AW433528 1372674_at BE107155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107155 /DB_XREF=gi:8499260 /DB_XREF=UI-R-BS1-ayq-e-03-0-UI.s1 /CLONE=UI-R-BS1-ayq-e-03-0-UI /FEA=EST /CNT=11 /TID=Rn.8266.1 /TIER=Stack /STK=11 /UG=Rn.8266 /UG_TITLE=ESTs BE107155 RING1 and YY1 binding protein Rybp 312603 NM_001107879 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded 1372675_at BI291418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291418 /DB_XREF=gi:14950937 /DB_XREF=UI-R-CV2-cgq-a-08-0-UI.s1 /CLONE=UI-R-CV2-cgq-a-08-0-UI /FEA=EST /CNT=11 /TID=Rn.24386.1 /TIER=Stack /STK=11 /UG=Rn.24386 /UG_TITLE=ESTs, Highly similar to C259_HUMAN PROTEIN C21ORF59 (H.sapiens) BI291418 similar to RIKEN cDNA 1110004E09 RGD1306954 288269 NM_001008288 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded 1372676_at BI275774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275774 /DB_XREF=gi:14920017 /DB_XREF=UI-R-CX0-bxg-e-02-0-UI.s1 /CLONE=UI-R-CX0-bxg-e-02-0-UI /FEA=EST /CNT=11 /TID=Rn.3918.1 /TIER=Stack /STK=11 /UG=Rn.3918 /UG_TITLE=ESTs BI275774 fumarylacetoacetate hydrolase domain containing 1 Fahd1 302980 NM_001024991 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372677_at BM392053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392053 /DB_XREF=gi:18192106 /DB_XREF=UI-R-DO1-ckp-c-07-0-UI.s1 /CLONE=UI-R-DO1-ckp-c-07-0-UI /FEA=EST /CNT=11 /TID=Rn.38296.1 /TIER=Stack /STK=11 /UG=Rn.38296 /UG_TITLE=ESTs BM392053 deoxyhypusine hydroxylase/monooxygenase Dohh 314644 NM_001025006 0008612 // peptidyl-lysine modification to hypusine // not recorded /// 0008612 // peptidyl-lysine modification to hypusine // inferred from sequence or structural similarity /// 0008612 // peptidyl-lysine modification to hypusine // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0019135 // deoxyhypusine monooxygenase activity // not recorded /// 0019135 // deoxyhypusine monooxygenase activity // inferred from sequence or structural similarity /// 0019135 // deoxyhypusine monooxygenase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372678_at AA800044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800044 /DB_XREF=gi:2862999 /DB_XREF=EST189541 /CLONE=RHEAI75 /FEA=EST /CNT=11 /TID=Rn.3851.1 /TIER=Stack /STK=11 /UG=Rn.3851 /UG_TITLE=ESTs AA800044 zinc finger protein 828 Zfp828 306647 NM_001107329 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1372679_at BI296209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296209 /DB_XREF=gi:14960422 /DB_XREF=UI-R-DK0-cex-f-04-0-UI.s1 /CLONE=UI-R-DK0-cex-f-04-0-UI /FEA=EST /CNT=11 /TID=Rn.8798.1 /TIER=Stack /STK=11 /UG=Rn.8798 /UG_TITLE=ESTs, Weakly similar to T32493 unc-45 protein - Caenorhabditis elegans (C.elegans) BI296209 unc-45 homolog A (C. elegans) Unc45a 308759 NM_001037647 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372680_at AI406310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406310 /DB_XREF=gi:4249814 /DB_XREF=EST234596 /CLONE=RBRDM66 /FEA=EST /CNT=11 /TID=Rn.11543.1 /TIER=Stack /STK=11 /UG=Rn.11543 /UG_TITLE=ESTs, Weakly similar to T20899 hypothetical protein F14F3.3 - Caenorhabditis elegans (C.elegans) AI406310 leukocyte receptor cluster (LRC) member 4 Leng4 308309 NM_001134978 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1372681_at BI294716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294716 /DB_XREF=gi:14957442 /DB_XREF=UI-R-DK0-ceb-c-05-0-UI.s1 /CLONE=UI-R-DK0-ceb-c-05-0-UI /FEA=EST /CNT=11 /TID=Rn.11962.1 /TIER=Stack /STK=11 /UG=Rn.11962 /UG_TITLE=ESTs BI294716 1372682_at BI289460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289460 /DB_XREF=gi:14947054 /DB_XREF=UI-R-DK0-cfh-c-10-0-UI.s1 /CLONE=UI-R-DK0-cfh-c-10-0-UI /FEA=EST /CNT=11 /TID=Rn.46123.1 /TIER=Stack /STK=11 /UG=Rn.46123 /UG_TITLE=ESTs BI289460 similar to RIKEN cDNA 2810432L12 RGD1307218 362518 NM_001014190 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1372683_at BI291252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291252 /DB_XREF=gi:14950619 /DB_XREF=UI-R-CV2-cgn-d-01-0-UI.s1 /CLONE=UI-R-CV2-cgn-d-01-0-UI /FEA=EST /CNT=11 /TID=Rn.51875.1 /TIER=Stack /STK=11 /UG=Rn.51875 /UG_TITLE=ESTs, Weakly similar to F53E10.1.p (Caenorhabditis elegans) (C.elegans) BI291252 molybdenum cofactor sulfurase Mocos 361300 NM_001108425 0008152 // metabolic process // inferred from electronic annotation /// 0043545 // molybdopterin cofactor metabolic process // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0008265 // Mo-molybdopterin cofactor sulfurase activity // not recorded /// 0030151 // molybdenum ion binding // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1372684_at AW435036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435036 /DB_XREF=gi:6966343 /DB_XREF=UI-R-BJ0p-afv-h-04-0-UI.s1 /CLONE=UI-R-BJ0p-afv-h-04-0-UI /FEA=EST /CNT=11 /TID=Rn.43475.1 /TIER=Stack /STK=11 /UG=Rn.43475 /UG_TITLE=ESTs, Weakly similar to JC7186 alpha-actinin-4 - rat (R.norvegicus) AW435036 smoothelin Smtn 289734 NM_001013049 1372685_at BE113362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113362 /DB_XREF=gi:8505467 /DB_XREF=UI-R-BJ1-awe-e-01-0-UI.s1 /CLONE=UI-R-BJ1-awe-e-01-0-UI /FEA=EST /CNT=11 /TID=Rn.25026.1 /TIER=Stack /STK=11 /UG=Rn.25026 /UG_TITLE=ESTs, Moderately similar to cyclin-dependent kinase inhibitor 3; CDK2-associated dual specificity phophatase; cyclin-dependent kinase interacting protein 2; kinase-associated phosphatase; cyclin-dependent kinase interactor 1 (Homo sapiens) (H.sapiens) BE113362 cyclin-dependent kinase inhibitor 3 Cdkn3 289993 NM_001106028 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1372686_at BE113476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113476 /DB_XREF=gi:8505581 /DB_XREF=UI-R-BJ1-awl-g-06-0-UI.s1 /CLONE=UI-R-BJ1-awl-g-06-0-UI /FEA=EST /CNT=11 /TID=Rn.16672.1 /TIER=Stack /STK=11 /UG=Rn.16672 /UG_TITLE=ESTs BE113476 proteasome (prosome, macropain) assembly chaperone 4 Psmg4 689623 NM_001129879 1372687_at BI278186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278186 /DB_XREF=gi:14924785 /DB_XREF=UI-R-CZ0-bye-e-01-0-UI.s1 /CLONE=UI-R-CZ0-bye-e-01-0-UI /FEA=EST /CNT=11 /TID=Rn.24766.1 /TIER=Stack /STK=11 /UG=Rn.24766 /UG_TITLE=ESTs, Moderately similar to NIC1_HUMAN NICE-1 PROTEIN (H.sapiens) BI278186 cysteine-rich C-terminal 1 Crct1 688401 XM_001066782 1372688_at BI296190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296190 /DB_XREF=gi:14960383 /DB_XREF=UI-R-DK0-cex-d-06-0-UI.s1 /CLONE=UI-R-DK0-cex-d-06-0-UI /FEA=EST /CNT=11 /TID=Rn.45886.1 /TIER=Stack /STK=11 /UG=Rn.45886 /UG_TITLE=ESTs, Weakly similar to F31D4.1.p (Caenorhabditis elegans) (C.elegans) BI296190 exosome component 7 Exosc7 316098 NM_001100725 0006396 // RNA processing // inferred from electronic annotation 0000175 // 3'-5'-exoribonuclease activity // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372689_at BG381479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381479 /DB_XREF=gi:13305951 /DB_XREF=UI-R-CT0-buj-g-10-0-UI.s1 /CLONE=UI-R-CT0-buj-g-10-0-UI /FEA=EST /CNT=11 /TID=Rn.36164.1 /TIER=Stack /STK=11 /UG=Rn.36164 /UG_TITLE=ESTs BG381479 transmembrane protein 103 Tmem103 363150 NM_001108782 1372690_at AI137471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137471 /DB_XREF=gi:3638248 /DB_XREF=UI-R-C2p-ol-d-12-0-UI.s1 /CLONE=UI-R-C2p-ol-d-12-0-UI /FEA=EST /CNT=11 /TID=Rn.22361.1 /TIER=Stack /STK=11 /UG=Rn.22361 /UG_TITLE=ESTs AI137471 reticulon 4 receptor-like 1 Rtn4rl1 303311 NM_181377 0007166 // cell surface receptor linked signaling pathway // non-traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0046658 // anchored to plasma membrane // inferred from direct assay /// 0046658 // anchored to plasma membrane // not recorded /// 0046658 // anchored to plasma membrane // inferred from sequence or structural similarity /// 0046658 // anchored to plasma membrane // inferred from electronic annotation 0004872 // receptor activity // not recorded /// 0004872 // receptor activity // inferred from sequence or structural similarity /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1372691_at BI292558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292558 /DB_XREF=gi:14953172 /DB_XREF=UI-R-DO0-ciw-e-02-0-UI.s1 /CLONE=UI-R-DO0-ciw-e-02-0-UI /FEA=EST /CNT=11 /TID=Rn.23590.1 /TIER=Stack /STK=11 /UG=Rn.23590 /UG_TITLE=ESTs, Highly similar to URIDINE PHOSPHORYLASE (M.musculus) BI292558 uridine phosphorylase 1 Upp1 289801 NM_001030025 0006220 // pyrimidine nucleotide metabolic process // inferred from electronic annotation /// 0006220 // pyrimidine nucleotide metabolic process // not recorded /// 0008152 // metabolic process // not recorded /// 0009116 // nucleoside metabolic process // inferred from electronic annotation /// 0009166 // nucleotide catabolic process // inferred from electronic annotation /// 0046108 // uridine metabolic process // inferred from electronic annotation /// 0046108 // uridine metabolic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004850 // uridine phosphorylase activity // inferred from electronic annotation /// 0004850 // uridine phosphorylase activity // not recorded /// 0016763 // transferase activity, transferring pentosyl groups // inferred from electronic annotation 1372692_at AI406490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406490 /DB_XREF=gi:4249994 /DB_XREF=EST234776 /CLONE=RBRDL71 /FEA=EST /CNT=11 /TID=Rn.7212.1 /TIER=Stack /STK=11 /UG=Rn.7212 /UG_TITLE=ESTs, Moderately similar to 1914275A non-receptor Tyr kinase (H.sapiens) AI406490 tyrosine kinase, non-receptor, 2 Tnk2 303882 NM_001008336 0006468 // protein phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005912 // adherens junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0030425 // dendrite // not recorded /// 0030426 // growth cone // not recorded /// 0043025 // neuronal cell body // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372693_at AI408833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408833 /DB_XREF=gi:4252337 /DB_XREF=EST237124 /CLONE=RKIDP39 /FEA=EST /CNT=11 /TID=Rn.25771.1 /TIER=Stack /STK=11 /UG=Rn.25771 /UG_TITLE=ESTs, Highly similar to DDRT helix-destabilizing protein - rat (R.norvegicus) AI408833 heterogeneous nuclear ribonucleoprotein A1 Hnrnpa1 29578 NM_017248 0000380 // alternative nuclear mRNA splicing, via spliceosome // not recorded /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0016070 // RNA metabolic process // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation /// 0051168 // nuclear export // not recorded /// 0051168 // nuclear export // inferred from sequence or structural similarity /// 0051170 // nuclear import // not recorded /// 0051170 // nuclear import // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005654 // nucleoplasm // inferred from sequence or structural similarity /// 0005681 // spliceosomal complex // not recorded /// 0005681 // spliceosomal complex // inferred from sequence or structural similarity /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // not recorded /// 0003697 // single-stranded DNA binding // inferred from sequence or structural similarity /// 0003697 // single-stranded DNA binding // traceable author statement /// 0003723 // RNA binding // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372694_at AI407148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407148 /DB_XREF=gi:4250652 /DB_XREF=EST235436 /CLONE=ROVDS70 /FEA=EST /CNT=11 /TID=Rn.66965.1 /TIER=Stack /STK=11 /UG=Rn.66965 /UG_TITLE=ESTs AI407148 1372695_at AI172165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172165 /DB_XREF=gi:3712205 /DB_XREF=EST218160 /CLONE=RMUBV74 /FEA=EST /CNT=11 /TID=Rn.18757.1 /TIER=Stack /STK=11 /UG=Rn.18757 /UG_TITLE=ESTs AI172165 1372696_at AA893807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893807 /DB_XREF=gi:4132336 /DB_XREF=EST197610 /CLONE=RPLAK82 /FEA=EST /CNT=11 /TID=Rn.22756.1 /TIER=Stack /STK=11 /UG=Rn.22756 /UG_TITLE=ESTs AA893807 1372697_at AW254612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254612 /DB_XREF=gi:6598203 /DB_XREF=UI-R-BJ0-aep-d-12-0-UI.s1 /CLONE=UI-R-BJ0-aep-d-12-0-UI /FEA=EST /CNT=11 /TID=Rn.12127.1 /TIER=Stack /STK=11 /UG=Rn.12127 /UG_TITLE=ESTs, Moderately similar to RT15_MOUSE 28S RIBOSOMAL PROTEIN S15, MITOCHONDRIAL PRECURSOR (MPR-S15) (DC37) (M.musculus) AW254612 mitochondrial ribosomal protein S15 Mrps15 298517 NM_001007653 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005763 // mitochondrial small ribosomal subunit // inferred from electronic annotation /// 0005763 // mitochondrial small ribosomal subunit // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1372698_at BI275970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275970 /DB_XREF=gi:14920417 /DB_XREF=UI-R-CX0-bxi-f-02-0-UI.s1 /CLONE=UI-R-CX0-bxi-f-02-0-UI /FEA=EST /CNT=11 /TID=Rn.7717.1 /TIER=Stack /STK=11 /UG=Rn.7717 /UG_TITLE=ESTs BI275970 1372699_at AI112403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112403 /DB_XREF=gi:3512352 /DB_XREF=UI-R-Y0-mm-a-10-0-UI.s1 /CLONE=UI-R-Y0-mm-a-10-0-UI /FEA=EST /CNT=11 /TID=Rn.22174.1 /TIER=Stack /STK=11 /UG=Rn.22174 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) AI112403 zinc finger protein 775 Znf775 312309 NM_001107859 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1372700_at BI297236 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297236 /DB_XREF=gi:14962425 /DB_XREF=UI-R-CV2-cgw-a-10-0-UI.s1 /CLONE=UI-R-CV2-cgw-a-10-0-UI /FEA=EST /CNT=11 /TID=Rn.66199.1 /TIER=Stack /STK=11 /UG=Rn.66199 /UG_TITLE=ESTs BI297236 1372701_at AI237597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237597 /DB_XREF=gi:3831103 /DB_XREF=EST234159 /CLONE=RPLDB27 /FEA=EST /CNT=130 /TID=Rn.3277.1 /TIER=Stack /STK=7 /UG=Rn.3277 /UG_TITLE=ESTs, Moderately similar to HS9B RAT HEAT SHOCK PROTEIN HSP 90-BETA (R.norvegicus) AI237597 heat shock protein 90, alpha (cytosolic), class A member 1 Hsp90aa1 299331 NM_175761 0001764 // neuron migration // inferred from mutant phenotype /// 0006457 // protein folding // traceable author statement /// 0006457 // protein folding // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0009408 // response to heat // inferred from expression pattern /// 0009651 // response to salt stress // inferred from expression pattern /// 0010592 // positive regulation of lamellipodium assembly // inferred from mutant phenotype /// 0034619 // cellular chaperone-mediated protein complex assembly // not recorded /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045429 // positive regulation of nitric oxide biosynthetic process // not recorded /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from sequence or structural similarity /// 0050790 // regulation of catalytic activity // not recorded /// 0070096 // mitochondrial outer membrane translocase complex assembly // not recorded 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0030235 // nitric-oxide synthase regulator activity // not recorded /// 0030235 // nitric-oxide synthase regulator activity // inferred from sequence or structural similarity /// 0030911 // TPR domain binding // not recorded /// 0030911 // TPR domain binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // not recorded /// 0051082 // unfolded protein binding // traceable author statement /// 0051082 // unfolded protein binding // inferred from electronic annotation 1372702_at BI284972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284972 /DB_XREF=gi:14938152 /DB_XREF=UI-R-DB0-byu-f-12-0-UI.s1 /CLONE=UI-R-DB0-byu-f-12-0-UI /FEA=EST /CNT=35 /TID=Rn.43060.1 /TIER=Stack /STK=10 /UG=Rn.43060 /UG_TITLE=ESTs BI284972 proline rich protein 2-like 1 Prp2l1 287750 XM_001081550 /// XM_002727827 0005515 // protein binding // inferred from electronic annotation 1372703_at BG380680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380680 /DB_XREF=gi:13305152 /DB_XREF=UI-R-CT0-bua-b-11-0-UI.s1 /CLONE=UI-R-CT0-bua-b-11-0-UI /FEA=EST /CNT=33 /TID=Rn.5935.1 /TIER=Stack /STK=10 /UG=Rn.5935 /UG_TITLE=ESTs, Weakly similar to UBC3_HUMAN UBIQUITIN-CONJUGATING ENZYME E2-32 KD COMPLEMENTING (H.sapiens) BG380680 similar to ubiquitin-conjugating enzyme E2R 2 LOC689226 689226 NM_001127573 0006513 // protein monoubiquitination // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1372704_at BE098941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098941 /DB_XREF=gi:8490815 /DB_XREF=UI-R-BJ1-atg-e-12-0-UI.s1 /CLONE=UI-R-BJ1-atg-e-12-0-UI /FEA=EST /CNT=24 /TID=Rn.1889.1 /TIER=Stack /STK=10 /UG=Rn.1889 /UG_TITLE=ESTs BE098941 oligosaccharyltransferase complex subunit Ostc 362040 NM_001108566 0008250 // oligosaccharyltransferase complex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1372705_at BG376747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376747 /DB_XREF=gi:13301219 /DB_XREF=UI-R-CU0-buv-e-03-0-UI.s1 /CLONE=UI-R-CU0-buv-e-03-0-UI /FEA=EST /CNT=24 /TID=Rn.6978.1 /TIER=Stack /STK=10 /UG=Rn.6978 /UG_TITLE=ESTs BG376747 calcium homeostasis endoplasmic reticulum protein Cherp 290614 NM_001106064 0006396 // RNA processing // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1372706_at AA892845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892845 /DB_XREF=gi:3019724 /DB_XREF=EST196648 /CLONE=RKIAX94 /FEA=EST /CNT=22 /TID=Rn.3021.1 /TIER=Stack /STK=10 /UG=Rn.3021 /UG_TITLE=ESTs, Moderately similar to BETA-HEXOSAMINIDASE BETA CHAIN PRECURSOR (M.musculus) AA892845 hexosaminidase B Hexb 294673 NM_001011946 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006044 // N-acetylglucosamine metabolic process // inferred from direct assay /// 0006687 // glycosphingolipid metabolic process // inferred from electronic annotation /// 0006687 // glycosphingolipid metabolic process // not recorded /// 0006689 // ganglioside catabolic process // inferred from electronic annotation /// 0006689 // ganglioside catabolic process // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0007040 // lysosome organization // inferred from electronic annotation /// 0007040 // lysosome organization // not recorded /// 0007338 // single fertilization // not recorded /// 0007338 // single fertilization // inferred from electronic annotation /// 0007341 // penetration of zona pellucida // inferred from electronic annotation /// 0007341 // penetration of zona pellucida // not recorded /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008049 // male courtship behavior // inferred from electronic annotation /// 0008049 // male courtship behavior // not recorded /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // not recorded /// 0009313 // oligosaccharide catabolic process // inferred from electronic annotation /// 0009313 // oligosaccharide catabolic process // not recorded /// 0019915 // lipid storage // inferred from electronic annotation /// 0019915 // lipid storage // not recorded /// 0019953 // sexual reproduction // inferred from electronic annotation /// 0019953 // sexual reproduction // not recorded /// 0030203 // glycosaminoglycan metabolic process // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // not recorded /// 0031323 // regulation of cellular metabolic process // inferred from electronic annotation /// 0031323 // regulation of cellular metabolic process // not recorded /// 0042552 // myelination // inferred from electronic annotation /// 0042552 // myelination // not recorded /// 0044267 // cellular protein metabolic process // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // not recorded /// 0048477 // oogenesis // inferred from electronic annotation /// 0048477 // oogenesis // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0050905 // neuromuscular process // not recorded /// 0050905 // neuromuscular process // inferred from electronic annotation 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0001669 // acrosomal vesicle // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004563 // beta-N-acetylhexosaminidase activity // not recorded /// 0004563 // beta-N-acetylhexosaminidase activity // inferred from electronic annotation /// 0005529 // sugar binding // inferred from direct assay /// 0015929 // hexosaminidase activity // inferred from direct assay /// 0016231 // beta-N-acetylglucosaminidase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 1372707_at AI412961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412961 /DB_XREF=gi:4256465 /DB_XREF=EST241261 /CLONE=RBRED30 /FEA=EST /CNT=39 /TID=Rn.1695.1 /TIER=Stack /STK=10 /UG=Rn.1695 /UG_TITLE=ESTs AI412961 RAB6A, member RAS oncogene family Rab6a 84379 NM_053366 0000042 // protein targeting to Golgi // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0018125 // peptidyl-cysteine methylation // not recorded /// 0032482 // Rab protein signal transduction // inferred by curator /// 0048193 // Golgi vesicle transport // traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0001671 // ATPase activator activity // inferred from direct assay /// 0001671 // ATPase activator activity // inferred from mutant phenotype /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0051117 // ATPase binding // inferred from physical interaction 1372708_at BI296544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296544 /DB_XREF=gi:14961072 /DB_XREF=UI-R-CV2-cgs-d-12-0-UI.s1 /CLONE=UI-R-CV2-cgs-d-12-0-UI /FEA=EST /CNT=21 /TID=Rn.17216.1 /TIER=Stack /STK=10 /UG=Rn.17216 /UG_TITLE=ESTs BI296544 1372709_at AI172204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172204 /DB_XREF=gi:3712244 /DB_XREF=EST218201 /CLONE=RMUBW24 /FEA=EST /CNT=20 /TID=Rn.19451.1 /TIER=Stack /STK=10 /UG=Rn.19451 /UG_TITLE=ESTs AI172204 B-cell receptor-associated protein 29 Bcap29 298943 NM_001006980 0006886 // intracellular protein transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1372710_at AI175027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175027 /DB_XREF=gi:3725665 /DB_XREF=EST218545 /CLONE=RMUCB25 /FEA=EST /CNT=19 /TID=Rn.3953.1 /TIER=Stack /STK=10 /UG=Rn.3953 /UG_TITLE=ESTs AI175027 blocked early in transport 1 homolog (S. cerevisiae) Bet1 29631 NM_019251 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0000139 // Golgi membrane // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005801 // cis-Golgi network // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031201 // SNARE complex // traceable author statement /// 0031985 // Golgi cisterna // inferred from direct assay 0005515 // protein binding // not recorded 1372711_at AI409292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409292 /DB_XREF=gi:4252796 /DB_XREF=EST237584 /CLONE=RKIDL85 /FEA=EST /CNT=33 /TID=Rn.3696.1 /TIER=Stack /STK=10 /UG=Rn.3696 /UG_TITLE=ESTs AI409292 similar to cDNA sequence BC005537 LOC498750 498750 NM_001017510 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 1372712_at BG380294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380294 /DB_XREF=gi:13304766 /DB_XREF=UI-R-CS0-btv-d-08-0-UI.s1 /CLONE=UI-R-CS0-btv-d-08-0-UI /FEA=EST /CNT=19 /TID=Rn.8836.1 /TIER=Stack /STK=10 /UG=Rn.8836 /UG_TITLE=ESTs, Weakly similar to JC7111 tetratricopeptide repeat-containing protein - mouse (M.musculus) BG380294 tetratricopeptide repeat domain 1 Ttc1 287208 NM_001005529 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1372713_at BE109614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109614 /DB_XREF=gi:8501719 /DB_XREF=UI-R-BJ1-avq-b-08-0-UI.s1 /CLONE=UI-R-BJ1-avq-b-08-0-UI /FEA=EST /CNT=19 /TID=Rn.7951.1 /TIER=Stack /STK=10 /UG=Rn.7951 /UG_TITLE=ESTs BE109614 SET domain containing 3 Setd3 299295 XM_002726774 /// XM_002726775 /// XM_216781 1372714_at BG668449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668449 /DB_XREF=gi:13890371 /DB_XREF=DRABZH09 /CLONE=DRABZH09 /FEA=EST /CNT=18 /TID=Rn.7056.1 /TIER=Stack /STK=10 /UG=Rn.7056 /UG_TITLE=ESTs BG668449 transmembrane protein 168 Tmem168 312135 NM_001014054 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from electronic annotation /// 0030133 // transport vesicle // not recorded 1372715_at AA819349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819349 /DB_XREF=gi:4228487 /DB_XREF=UI-R-A0-bc-d-11-0-UI.s1 /CLONE=UI-R-A0-bc-d-11-0-UI /FEA=EST /CNT=18 /TID=Rn.2009.1 /TIER=Stack /STK=10 /UG=Rn.2009 /UG_TITLE=ESTs, Weakly similar to T19996 hypothetical protein C47D12.3 - Caenorhabditis elegans (C.elegans) AA819349 1372716_at BF284207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284207 /DB_XREF=gi:11215277 /DB_XREF=EST448798 /CLONE=RGIEM57 /FEA=EST /CNT=18 /TID=Rn.17195.1 /TIER=Stack /STK=10 /UG=Rn.17195 /UG_TITLE=ESTs BF284207 1372717_at BI296012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296012 /DB_XREF=gi:14960030 /DB_XREF=UI-R-DK0-cfd-d-04-0-UI.s1 /CLONE=UI-R-DK0-cfd-d-04-0-UI /FEA=EST /CNT=17 /TID=Rn.8417.1 /TIER=Stack /STK=10 /UG=Rn.8417 /UG_TITLE=ESTs BI296012 1372718_at AA799572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799572 /DB_XREF=gi:2862527 /DB_XREF=EST189069 /CLONE=RHEAC68 /FEA=EST /CNT=17 /TID=Rn.11602.1 /TIER=Stack /STK=10 /UG=Rn.11602 /UG_TITLE=ESTs, Weakly similar to T13576 hypothetical protein EG:52C10.5 - fruit fly (D.melanogaster) AA799572 anaphase promoting complex subunit 13 Anapc13 685029 NM_001173983 /// XM_001060533 /// XM_001060592 /// XM_002727130 /// XM_002727131 0070979 // protein K11-linked ubiquitination // not recorded 0005680 // anaphase-promoting complex // not recorded 1372719_at BF283702 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283702 /DB_XREF=gi:11214772 /DB_XREF=EST448293 /CLONE=RGIEF65 /FEA=EST /CNT=17 /TID=Rn.7891.1 /TIER=Stack /STK=10 /UG=Rn.7891 /UG_TITLE=ESTs BF283702 1372720_at AA848449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848449 /DB_XREF=gi:4131644 /DB_XREF=EST191209 /CLONE=RKIAC42 /FEA=EST /CNT=26 /TID=Rn.6364.1 /TIER=Stack /STK=10 /UG=Rn.6364 /UG_TITLE=ESTs AA848449 BTB (POZ) domain containing 1 Btbd1 293060 NM_001011932 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372721_at AI175447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175447 /DB_XREF=gi:3726085 /DB_XREF=EST218994 /CLONE=RMUCN59 /FEA=EST /CNT=22 /TID=Rn.9196.1 /TIER=Stack /STK=10 /UG=Rn.9196 /UG_TITLE=ESTs, Weakly similar to T23419 hypothetical protein K07F5.14 - Caenorhabditis elegans (C.elegans) AI175447 1372722_at AI175031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175031 /DB_XREF=gi:3725669 /DB_XREF=EST218549 /CLONE=RMUCB30 /FEA=EST /CNT=18 /TID=Rn.13387.1 /TIER=Stack /STK=10 /UG=Rn.13387 /UG_TITLE=ESTs, Weakly similar to HS41 MOUSE HEAT SHOCK 40 KDA PROTEIN 1 (M.musculus) AI175031 1372723_at BF396318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396318 /DB_XREF=gi:11381290 /DB_XREF=UI-R-BS2-bdw-g-06-0-UI.s1 /CLONE=UI-R-BS2-bdw-g-06-0-UI /FEA=EST /CNT=17 /TID=Rn.19707.1 /TIER=Stack /STK=10 /UG=Rn.19707 /UG_TITLE=ESTs BF396318 Importin 9 Ipo9 304817 NM_001107180 0006606 // protein import into nucleus // not recorded /// 0006886 // intracellular protein transport // inferred from electronic annotation 0005737 // cytoplasm // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0008565 // protein transporter activity // not recorded /// 0042393 // histone binding // not recorded 1372724_at BI284904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284904 /DB_XREF=gi:14938011 /DB_XREF=UI-R-CX0s-cct-f-06-0-UI.s1 /CLONE=UI-R-CX0s-cct-f-06-0-UI /FEA=EST /CNT=17 /TID=Rn.5898.1 /TIER=Stack /STK=10 /UG=Rn.5898 /UG_TITLE=ESTs, Moderately similar to S19586 N-methyl-D-aspartate receptor glutamate-binding chain - rat (R.norvegicus) BI284904 glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding) Grina 266668 NM_153308 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005261 // cation channel activity // non-traceable author statement 1372725_at AI411594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411594 /DB_XREF=gi:4255098 /DB_XREF=EST239888 /CLONE=ROVET29 /FEA=EST /CNT=17 /TID=Rn.1169.1 /TIER=Stack /STK=10 /UG=Rn.1169 /UG_TITLE=ESTs, Moderately similar to PLS1_RAT Phospholipid scramblase 1 (PL scramblase 1) (Ca2+ dependent phospholipid scramblase 1) (R.norvegicus) AI411594 phospholipid scramblase 2 Plscr2 315883 NM_001014094 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372726_at AI176792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176792 /DB_XREF=gi:3727430 /DB_XREF=EST220388 /CLONE=ROVBW84 /FEA=EST /CNT=17 /TID=Rn.3919.1 /TIER=Stack /STK=10 /UG=Rn.3919 /UG_TITLE=ESTs AI176792 histone cluster 1, H4b Hist1h4b 64627 NM_022686 0001503 // ossification // inferred from electronic annotation /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045653 // negative regulation of megakaryocyte differentiation // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1372727_at BM384088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384088 /DB_XREF=gi:18184141 /DB_XREF=UI-R-DZ0-cks-o-20-0-UI.s1 /CLONE=UI-R-DZ0-cks-o-20-0-UI /FEA=EST /CNT=16 /TID=Rn.15045.1 /TIER=Stack /STK=10 /UG=Rn.15045 /UG_TITLE=ESTs BM384088 1372728_at BE103745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103745 /DB_XREF=gi:8495845 /DB_XREF=UI-R-BX0-arp-b-06-0-UI.s1 /CLONE=UI-R-BX0-arp-b-06-0-UI /FEA=EST /CNT=16 /TID=Rn.18004.1 /TIER=Stack /STK=10 /UG=Rn.18004 /UG_TITLE=ESTs, Moderately similar to SORT RAT SORTILIN (R.norvegicus) BE103745 sortilin 1 Sort1 83576 NM_031767 0001503 // ossification // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // non-traceable author statement /// 0006895 // Golgi to endosome transport // not recorded /// 0006897 // endocytosis // inferred from electronic annotation /// 0006897 // endocytosis // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008333 // endosome to lysosome transport // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0014902 // myotube differentiation // not recorded /// 0016050 // vesicle organization // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0032509 // endosome transport via multivesicular body sorting pathway // not recorded /// 0032868 // response to insulin stimulus // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0046323 // glucose import // not recorded /// 0048011 // nerve growth factor receptor signaling pathway // not recorded /// 0048227 // plasma membrane to endosome transport // not recorded /// 0051005 // negative regulation of lipoprotein lipase activity // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // not recorded /// 0009986 // cell surface // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0030136 // clathrin-coated vesicle // not recorded /// 0030140 // trans-Golgi network transport vesicle // not recorded /// 0030425 // dendrite // inferred from direct assay /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0010465 // nerve growth factor receptor activity // not recorded /// 0016492 // neurotensin receptor activity, G-protein coupled // traceable author statement /// 0019899 // enzyme binding // not recorded /// 0030379 // neurotensin receptor activity, non-G-protein coupled // not recorded /// 0048406 // nerve growth factor binding // not recorded 1372729_at AI137406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137406 /DB_XREF=gi:3638183 /DB_XREF=UI-R-C2p-ok-a-09-0-UI.s1 /CLONE=UI-R-C2p-ok-a-09-0-UI /FEA=EST /CNT=16 /TID=Rn.20035.1 /TIER=Stack /STK=10 /UG=Rn.20035 /UG_TITLE=ESTs, Moderately similar to A55945 endothelial cell protein C receptor precursor - mouse (M.musculus) AI137406 protein C receptor, endothelial Procr 362248 NM_001025733 0006955 // immune response // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1372730_at BF282327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282327 /DB_XREF=gi:11213498 /DB_XREF=EST447019 /CLONE=RGIDN27 /FEA=EST /CNT=16 /TID=Rn.13075.1 /TIER=Stack /STK=10 /UG=Rn.13075 /UG_TITLE=ESTs, Highly similar to PD22_MOUSE PUTATIVE PROTEIN PRED22 HOMOLOG (M.musculus) BF282327 1372731_at AI228628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228628 /DB_XREF=gi:3812515 /DB_XREF=EST225323 /CLONE=RBRCX37 /FEA=EST /CNT=18 /TID=Rn.7462.1 /TIER=Stack /STK=10 /UG=Rn.7462 /UG_TITLE=ESTs AI228628 ras homolog gene family, member T1 /// ring finger protein 135 Rhot1 /// Rnf135 303350 /// 303351 NM_001012010 /// NM_001107026 0006270 // DNA-dependent DNA replication initiation // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from sequence or structural similarity /// 0019725 // cellular homeostasis // not recorded /// 0032728 // positive regulation of interferon-beta production // not recorded /// 0032728 // positive regulation of interferon-beta production // inferred from sequence or structural similarity /// 0045087 // innate immune response // inferred from electronic annotation /// 0045088 // regulation of innate immune response // not recorded /// 0045088 // regulation of innate immune response // inferred from sequence or structural similarity /// 0047497 // mitochondrion transport along microtubule // inferred from electronic annotation /// 0047497 // mitochondrion transport along microtubule // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0031307 // integral to mitochondrial outer membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0043021 // ribonucleoprotein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1372732_at BM386917 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386917 /DB_XREF=gi:18186970 /DB_XREF=UI-R-CN1-cjh-l-20-0-UI.s1 /CLONE=UI-R-CN1-cjh-l-20-0-UI /FEA=EST /CNT=18 /TID=Rn.22367.1 /TIER=Stack /STK=10 /UG=Rn.22367 /UG_TITLE=ESTs, Weakly similar to T27537 hypothetical protein ZC395.7 - Caenorhabditis elegans (C.elegans) BM386917 inosine triphosphatase (nucleoside triphosphate pyrophosphatase) Itpa 311422 NM_001107774 0008152 // metabolic process // not recorded 0016787 // hydrolase activity // inferred from electronic annotation /// 0047429 // nucleoside-triphosphate diphosphatase activity // not recorded 1372733_at BM391852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391852 /DB_XREF=gi:18191905 /DB_XREF=UI-R-DO1-cmk-h-18-0-UI.s1 /CLONE=UI-R-DO1-cmk-h-18-0-UI /FEA=EST /CNT=17 /TID=Rn.7917.1 /TIER=Stack /STK=10 /UG=Rn.7917 /UG_TITLE=ESTs BM391852 1372734_at AI408095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408095 /DB_XREF=gi:4251599 /DB_XREF=EST236385 /CLONE=ROVEF05 /FEA=EST /CNT=16 /TID=Rn.8604.1 /TIER=Stack /STK=10 /UG=Rn.8604 /UG_TITLE=ESTs AI408095 small trans-membrane and glycosylated protein Smagp 300236 NM_182817 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 1372735_at BI283109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283109 /DB_XREF=gi:14934528 /DB_XREF=UI-R-CU0s-cca-b-03-0-UI.s1 /CLONE=UI-R-CU0s-cca-b-03-0-UI /FEA=EST /CNT=15 /TID=Rn.1706.1 /TIER=Stack /STK=10 /UG=Rn.1706 /UG_TITLE=ESTs, Highly similar to PTD001 (H.sapiens) BI283109 eukaryotic translation initiation factor 3, subunit K Eif3k 292762 NM_001106242 0006413 // translational initiation // not recorded /// 0006413 // translational initiation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003743 // translation initiation factor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043022 // ribosome binding // inferred from electronic annotation 1372736_at BG374196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374196 /DB_XREF=gi:13298668 /DB_XREF=UI-R-CV1-bsm-e-06-0-UI.s1 /CLONE=UI-R-CV1-bsm-e-06-0-UI /FEA=EST /CNT=15 /TID=Rn.15222.1 /TIER=Stack /STK=10 /UG=Rn.15222 /UG_TITLE=ESTs BG374196 amylo-1,6-glucosidase, 4-alpha-glucanotransferase Agl 362029 NM_001108564 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // not recorded /// 0005978 // glycogen biosynthetic process // inferred from electronic annotation /// 0005980 // glycogen catabolic process // inferred from direct assay /// 0005980 // glycogen catabolic process // inferred from mutant phenotype /// 0007584 // response to nutrient // inferred from direct assay /// 0009725 // response to hormone stimulus // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0016234 // inclusion body // not recorded /// 0016529 // sarcoplasmic reticulum // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004133 // glycogen debranching enzyme activity // not recorded /// 0004134 // 4-alpha-glucanotransferase activity // inferred from direct assay /// 0004134 // 4-alpha-glucanotransferase activity // inferred from electronic annotation /// 0004134 // 4-alpha-glucanotransferase activity // inferred from mutant phenotype /// 0004135 // amylo-alpha-1,6-glucosidase activity // inferred from direct assay /// 0004135 // amylo-alpha-1,6-glucosidase activity // inferred from electronic annotation /// 0004135 // amylo-alpha-1,6-glucosidase activity // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0030247 // polysaccharide binding // not recorded /// 0031593 // polyubiquitin binding // not recorded /// 0043169 // cation binding // inferred from electronic annotation 1372737_at BF395095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395095 /DB_XREF=gi:11380103 /DB_XREF=UI-R-CM0-bjj-c-07-0-UI.s1 /CLONE=UI-R-CM0-bjj-c-07-0-UI /FEA=EST /CNT=15 /TID=Rn.22171.1 /TIER=Stack /STK=10 /UG=Rn.22171 /UG_TITLE=ESTs BF395095 LIM domain binding 3 Ldb3 498587 NM_001110490 0005856 // cytoskeleton // not recorded /// 0030018 // Z disc // not recorded 0005080 // protein kinase C binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1372738_at BE109600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109600 /DB_XREF=gi:8501705 /DB_XREF=UI-R-BJ1-avq-a-06-0-UI.s1 /CLONE=UI-R-BJ1-avq-a-06-0-UI /FEA=EST /CNT=15 /TID=Rn.12613.1 /TIER=Stack /STK=10 /UG=Rn.12613 /UG_TITLE=ESTs BE109600 REX1, RNA exonuclease 1 homolog (S. cerevisiae) Rexo1 314630 NM_001012114 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation 1372739_at AA818865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818865 /DB_XREF=gi:4227537 /DB_XREF=UI-R-A0-av-a-06-0-UI.s1 /CLONE=UI-R-A0-av-a-06-0-UI /FEA=EST /CNT=15 /TID=Rn.2256.1 /TIER=Stack /STK=10 /UG=Rn.2256 /UG_TITLE=ESTs, Highly similar to SAS_HUMAN SARCOMA AMPLIFIED SEQUENC (H.sapiens) AA818865 tetraspanin 31 Tspan31 362890 NM_001008378 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1372740_at AA925557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925557 /DB_XREF=gi:4236748 /DB_XREF=UI-R-A1-er-e-01-0-UI.s1 /CLONE=UI-R-A1-er-e-01-0-UI /FEA=EST /CNT=15 /TID=Rn.32511.1 /TIER=Stack /STK=10 /UG=Rn.32511 /UG_TITLE=ESTs AA925557 misshapen-like kinase 1 (zebrafish) Mink1 303259 XM_001079459 /// XM_002724512 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0006950 // response to stress // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007275 // multicellular organismal development // not recorded /// 0045060 // negative thymic T cell selection // inferred from electronic annotation /// 0045060 // negative thymic T cell selection // not recorded 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded 1372741_at AI412013 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412013 /DB_XREF=gi:4255517 /DB_XREF=EST240307 /CLONE=RKIEJ43 /FEA=EST /CNT=25 /TID=Rn.4274.1 /TIER=Stack /STK=10 /UG=Rn.4274 /UG_TITLE=ESTs, Weakly similar to F22F7.1.p (Caenorhabditis elegans) (C.elegans) AI412013 saccharopine dehydrogenase (putative) Sccpdh 305021 NM_001013985 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0047131 // saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity // inferred from electronic annotation 1372742_at AI410058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410058 /DB_XREF=gi:4253562 /DB_XREF=EST238351 /CLONE=RPLDH70 /FEA=EST /CNT=19 /TID=Rn.17274.1 /TIER=Stack /STK=10 /UG=Rn.17274 /UG_TITLE=ESTs AI410058 ankyrin repeat and MYND domain containing 2 Ankmy2 314046 NM_001108019 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372743_at AI409727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409727 /DB_XREF=gi:4253231 /DB_XREF=EST238019 /CLONE=RPLDJ04 /FEA=EST /CNT=18 /TID=Rn.1065.1 /TIER=Stack /STK=10 /UG=Rn.1065 /UG_TITLE=ESTs, Highly similar to SNX5_HUMAN SORTING NEXIN 5 (H.sapiens) AI409727 sorting nexin 5 Snx5 296199 NM_001106518 0007154 // cell communication // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1372744_at BE113437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113437 /DB_XREF=gi:8505542 /DB_XREF=UI-R-BJ1-awl-c-12-0-UI.s1 /CLONE=UI-R-BJ1-awl-c-12-0-UI /FEA=EST /CNT=17 /TID=Rn.32322.1 /TIER=Stack /STK=10 /UG=Rn.32322 /UG_TITLE=ESTs, Weakly similar to T42209 neural plakophilin related arm-repeat protein NPRAP - mouse (M.musculus) BE113437 0005488 // binding // inferred from electronic annotation 1372745_at BE112453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112453 /DB_XREF=gi:8504558 /DB_XREF=UI-R-BJ1-avm-h-03-0-UI.s1 /CLONE=UI-R-BJ1-avm-h-03-0-UI /FEA=EST /CNT=17 /TID=Rn.7292.1 /TIER=Stack /STK=10 /UG=Rn.7292 /UG_TITLE=ESTs BE112453 PDZ and LIM domain 5 Pdlim5 64353 NM_053326 0007507 // heart development // non-traceable author statement /// 0051963 // regulation of synaptogenesis // inferred from direct assay /// 0061001 // regulation of dendritic spine morphogenesis // inferred from direct assay 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0030018 // Z disc // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0003779 // actin binding // inferred from direct assay /// 0005080 // protein kinase C binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030159 // receptor signaling complex scaffold activity // non-traceable author statement /// 0042805 // actinin binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from mutant phenotype 1372746_at BI295800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295800 /DB_XREF=gi:14959610 /DB_XREF=UI-R-DK0-cfa-g-08-0-UI.s1 /CLONE=UI-R-DK0-cfa-g-08-0-UI /FEA=EST /CNT=17 /TID=Rn.17965.1 /TIER=Stack /STK=10 /UG=Rn.17965 /UG_TITLE=ESTs BI295800 similar to RIKEN cDNA 2810428I15 RGD1566239 306348 NM_001107305 0005515 // protein binding // not recorded 1372747_at AI409899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409899 /DB_XREF=gi:4253403 /DB_XREF=EST238192 /CLONE=RPLDN02 /FEA=EST /CNT=16 /TID=Rn.13642.1 /TIER=Stack /STK=10 /UG=Rn.13642 /UG_TITLE=ESTs AI409899 solute carrier family 20 (phosphate transporter), member 2 Slc20a2 29502 NM_017223 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006817 // phosphate transport // inferred from electronic annotation /// 0044419 // interspecies interaction between organisms // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005315 // inorganic phosphate transmembrane transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation 1372748_at BE113335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113335 /DB_XREF=gi:8505405 /DB_XREF=UI-R-BJ1-awd-g-11-0-UI.s1 /CLONE=UI-R-BJ1-awd-g-11-0-UI /FEA=EST /CNT=16 /TID=Rn.1821.1 /TIER=Stack /STK=10 /UG=Rn.1821 /UG_TITLE=ESTs BE113335 TBC1 domain family, member 2B Tbc1d2b 315880 NM_001108175 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1372749_at AI009786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009786 /DB_XREF=gi:3223618 /DB_XREF=EST204237 /CLONE=RLUBO43 /FEA=EST /CNT=16 /TID=Rn.2833.2 /TIER=Stack /STK=10 /UG=Rn.2833 /UG_TITLE=R.norvegicus mRNA for ribosomal protein L41 AI009786 1372750_at AI102517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102517 /DB_XREF=gi:3704673 /DB_XREF=EST211806 /CLONE=REMBO67 /FEA=EST /CNT=16 /TID=Rn.2743.1 /TIER=Stack /STK=10 /UG=Rn.2743 /UG_TITLE=ESTs AI102517 1372751_at BM390320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390320 /DB_XREF=gi:18190373 /DB_XREF=UI-R-CN1-cjq-i-14-0-UI.s1 /CLONE=UI-R-CN1-cjq-i-14-0-UI /FEA=EST /CNT=15 /TID=Rn.3476.3 /TIER=Stack /STK=10 /UG=Rn.3476 /UG_TITLE=ESTs, Highly similar to S30034 translocating chain-associating membrane protein (H.sapiens) BM390320 1372752_at BF282632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282632 /DB_XREF=gi:11213702 /DB_XREF=EST447223 /CLONE=RGIDR08 /FEA=EST /CNT=15 /TID=Rn.11531.1 /TIER=Stack /STK=10 /UG=Rn.11531 /UG_TITLE=ESTs, Weakly similar to CD53 RAT LEUKOCYTE SURFACE ANTIGEN CD53 (R.norvegicus) BF282632 tetraspanin 4 Tspan4 293627 NM_001013070 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372753_at BI285643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285643 /DB_XREF=gi:14939497 /DB_XREF=UI-R-DD0-bzv-d-07-0-UI.s1 /CLONE=UI-R-DD0-bzv-d-07-0-UI /FEA=EST /CNT=15 /TID=Rn.9283.1 /TIER=Stack /STK=10 /UG=Rn.9283 /UG_TITLE=ESTs, Moderately similar to COQ6_HUMAN PUTATIVE UBIQUINONE BIOSYNTHESIS MONOOXGENASE COQ6 (H.sapiens) BI285643 coenzyme Q6 homolog (S. cerevisiae) Coq6 299195 NM_001011983 0006744 // ubiquinone biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0004497 // monooxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016709 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1372754_at BG666424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666424 /DB_XREF=gi:13888346 /DB_XREF=DRACNC03 /CLONE=DRACNC03 /FEA=EST /CNT=15 /TID=Rn.7015.1 /TIER=Stack /STK=10 /UG=Rn.7015 /UG_TITLE=ESTs BG666424 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2 Appl2 362860 NM_001108741 0008283 // cell proliferation // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0010008 // endosome membrane // not recorded /// 0016581 // NuRD complex // inferred from electronic annotation /// 0016581 // NuRD complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372755_at AI102073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102073 /DB_XREF=gi:3706907 /DB_XREF=EST211362 /CLONE=RBRBY58 /FEA=EST /CNT=15 /TID=Rn.3942.1 /TIER=Stack /STK=10 /UG=Rn.3942 /UG_TITLE=ESTs AI102073 mal, T-cell differentiation protein 2 Mal2 362911 NM_198786 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372756_at BG378166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378166 /DB_XREF=gi:13302638 /DB_XREF=UI-R-CV1-bvo-g-06-0-UI.s1 /CLONE=UI-R-CV1-bvo-g-06-0-UI /FEA=EST /CNT=15 /TID=Rn.18710.1 /TIER=Stack /STK=10 /UG=Rn.18710 /UG_TITLE=ESTs BG378166 1372757_at BM386875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386875 /DB_XREF=gi:18186928 /DB_XREF=UI-R-CN1-cjh-d-16-0-UI.s1 /CLONE=UI-R-CN1-cjh-d-16-0-UI /FEA=EST /CNT=15 /TID=Rn.33229.1 /TIER=Stack /STK=10 /UG=Rn.33229 /UG_TITLE=ESTs BM386875 signal transducer and activator of transcription 1 /// signal transducer and activator of transcription 4 Stat1 /// Stat4 25124 /// 367264 NM_001012226 /// NM_001034164 /// NM_032612 0006350 // transcription // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006917 // induction of apoptosis // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007259 // JAK-STAT cascade // inferred from mutant phenotype /// 0007259 // JAK-STAT cascade // traceable author statement /// 0007584 // response to nutrient // inferred from direct assay /// 0008015 // blood circulation // inferred from mutant phenotype /// 0008283 // cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0009612 // response to mechanical stimulus // inferred from direct assay /// 0009617 // response to bacterium // not recorded /// 0009617 // response to bacterium // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0031663 // lipopolysaccharide-mediated signaling pathway // not recorded /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from direct assay /// 0034097 // response to cytokine stimulus // inferred from direct assay /// 0042493 // response to drug // inferred from direct assay /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043330 // response to exogenous dsRNA // not recorded /// 0043330 // response to exogenous dsRNA // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0051591 // response to cAMP // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded 1372758_at BI282978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282978 /DB_XREF=gi:14934278 /DB_XREF=UI-R-CW0s-ccf-e-09-0-UI.s1 /CLONE=UI-R-CW0s-ccf-e-09-0-UI /FEA=EST /CNT=15 /TID=Rn.988.1 /TIER=Stack /STK=10 /UG=Rn.988 /UG_TITLE=ESTs BI282978 1372759_at H31766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31766 /DB_XREF=gi:977183 /DB_XREF=EST106135 /CLONE=RPCAX58 /FEA=EST /CNT=15 /TID=Rn.14064.1 /TIER=Stack /STK=10 /UG=Rn.14064 /UG_TITLE=ESTs, Highly similar to CDK9_HUMAN CELL DIVISION PROTEIN KINASE 9 (H.sapiens) H31766 cyclin-dependent kinase 9 Cdk9 362110 NM_001007743 0006350 // transcription // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from electronic annotation /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017069 // snRNA binding // inferred from electronic annotation /// 0017069 // snRNA binding // not recorded 1372760_at AI176579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176579 /DB_XREF=gi:3727217 /DB_XREF=EST220167 /CLONE=ROVBU12 /FEA=EST /CNT=14 /TID=Rn.22509.1 /TIER=Stack /STK=10 /UG=Rn.22509 /UG_TITLE=ESTs, Weakly similar to PA73_HUMAN PROTEIN PRO1073PRO2853 (H.sapiens) AI176579 1372761_at AI228076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228076 /DB_XREF=gi:4135309 /DB_XREF=EST224771 /CLONE=RBRCP87 /FEA=EST /CNT=14 /TID=Rn.22957.1 /TIER=Stack /STK=10 /UG=Rn.22957 /UG_TITLE=ESTs AI228076 1372762_at AA849729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849729 /DB_XREF=gi:4131758 /DB_XREF=EST192496 /CLONE=RMUAI20 /FEA=EST /CNT=14 /TID=Rn.17508.1 /TIER=Stack /STK=10 /UG=Rn.17508 /UG_TITLE=ESTs, Weakly similar to guanosine-3,5-bis(diphosphate)-pyrophosphohydrolase like (Caenorhabditis elegans) (C.elegans) AA849729 HD domain containing 3 Hddc3 308758 NM_001107528 0003824 // catalytic activity // inferred from electronic annotation 1372763_at AI407545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407545 /DB_XREF=gi:4251049 /DB_XREF=EST235835 /CLONE=ROVDZ20 /FEA=EST /CNT=14 /TID=Rn.4259.1 /TIER=Stack /STK=10 /UG=Rn.4259 /UG_TITLE=ESTs AI407545 nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) Nus1 294400 NM_001164157 0016765 // transferase activity, transferring alkyl or aryl (other than methyl) groups // inferred from electronic annotation 1372764_at BI276261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276261 /DB_XREF=gi:14920994 /DB_XREF=UI-R-CX0-bxf-h-11-0-UI.s1 /CLONE=UI-R-CX0-bxf-h-11-0-UI /FEA=EST /CNT=14 /TID=Rn.23237.1 /TIER=Stack /STK=10 /UG=Rn.23237 /UG_TITLE=ESTs, Highly similar to RIKEN cDNA 1500003K04 (Mus musculus) (M.musculus) BI276261 similar to density-regulated protein LOC687565 687565 NM_001115046 0006413 // translational initiation // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred from electronic annotation 1372765_a_at BM390774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390774 /DB_XREF=gi:18190827 /DB_XREF=UI-R-CN1-cjr-p-01-0-UI.s1 /CLONE=UI-R-CN1-cjr-p-01-0-UI /FEA=EST /CNT=14 /TID=Rn.3194.1 /TIER=Stack /STK=10 /UG=Rn.3194 /UG_TITLE=ESTs, Weakly similar to F Chain F, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 (R.norvegicus) BM390774 peroxisomal D3,D2-enoyl-CoA isomerase /// similar to RIKEN cDNA 1810022C23 Peci /// RGD1310224 291075 /// 291076 NM_001006966 /// NM_001009275 0006635 // fatty acid beta-oxidation // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // not recorded /// 0005777 // peroxisome // inferred from electronic annotation /// 0005782 // peroxisomal matrix // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded 0000062 // acyl-CoA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004165 // dodecenoyl-CoA delta-isomerase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0016863 // intramolecular oxidoreductase activity, transposing C=C bonds // inferred from direct assay 1372766_at BI293061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293061 /DB_XREF=gi:14954195 /DB_XREF=UI-R-DK0-cdj-h-10-0-UI.s1 /CLONE=UI-R-DK0-cdj-h-10-0-UI /FEA=EST /CNT=14 /TID=Rn.21919.1 /TIER=Stack /STK=10 /UG=Rn.21919 /UG_TITLE=ESTs, Highly similar to CNRA MOUSE ROD CGMP-SPECIFIC 3,5-CYCLIC PHOSPHODIESTERASE ALPHA-SUBUNIT (M.musculus) BI293061 copine V Cpne5 309650 NM_001107616 0043005 // neuron projection // not recorded /// 0043025 // neuronal cell body // not recorded 1372767_at AI231284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231284 /DB_XREF=gi:3815164 /DB_XREF=EST227972 /CLONE=REMDI15 /FEA=EST /CNT=14 /TID=Rn.9501.1 /TIER=Stack /STK=10 /UG=Rn.9501 /UG_TITLE=ESTs AI231284 family with sequence similarity 168, member B /// similar to Protein KIAA0280 Fam168b /// LOC503175 503175 /// 690188 XM_001073605 /// XM_002727216 /// XM_578699 1372768_at AW251331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251331 /DB_XREF=gi:6594922 /DB_XREF=UI-R-BJ0-adg-h-09-0-UI.s1 /CLONE=UI-R-BJ0-adg-h-09-0-UI /FEA=EST /CNT=14 /TID=Rn.22240.1 /TIER=Stack /STK=10 /UG=Rn.22240 /UG_TITLE=ESTs AW251331 1372769_at AI105290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105290 /DB_XREF=gi:3709406 /DB_XREF=EST214579 /CLONE=RKIBI40 /FEA=EST /CNT=14 /TID=Rn.7911.1 /TIER=Stack /STK=10 /UG=Rn.7911 /UG_TITLE=ESTs, Highly similar to LIGA_MOUSE Ligatin (M.musculus) AI105290 ligatin Lgtn 498225 NM_001017489 0006413 // translational initiation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372770_at BF281357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281357 /DB_XREF=gi:11212427 /DB_XREF=EST445948 /CLONE=RGIAD63 /FEA=EST /CNT=20 /TID=Rn.12946.1 /TIER=Stack /STK=10 /UG=Rn.12946 /UG_TITLE=ESTs, Weakly similar to CALCIUM-DEPENDENT PROTEASE, SMALL (R.norvegicus) BF281357 similar to sorcin LOC683667 683667 NM_001128190 0005509 // calcium ion binding // inferred from electronic annotation 1372771_at BI279659 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279659 /DB_XREF=gi:14927686 /DB_XREF=UI-R-DE0-caf-b-07-0-UI.s1 /CLONE=UI-R-DE0-caf-b-07-0-UI /FEA=EST /CNT=17 /TID=Rn.3109.1 /TIER=Stack /STK=10 /UG=Rn.3109 /UG_TITLE=ESTs BI279659 1372772_at BM385098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385098 /DB_XREF=gi:18185151 /DB_XREF=UI-R-CN1-cjm-p-15-0-UI.s9 /CLONE=UI-R-CN1-cjm-p-15-0-UI /FEA=EST /CNT=17 /TID=Rn.16108.1 /TIER=Stack /STK=10 /UG=Rn.16108 /UG_TITLE=ESTs BM385098 nuclear factor of activated T-cells 5 Nfat5 307820 NM_001107425 0001816 // cytokine production // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1372773_at BM389728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389728 /DB_XREF=gi:18189781 /DB_XREF=UI-R-CN1-cjp-i-12-0-UI.s1 /CLONE=UI-R-CN1-cjp-i-12-0-UI /FEA=EST /CNT=16 /TID=Rn.5802.1 /TIER=Stack /STK=10 /UG=Rn.5802 /UG_TITLE=ESTs, Highly similar to NPDC-1 PROTEIN PRECURSOR (M.musculus) BM389728 neural proliferation, differentiation and control, 1 Npdc1 296562 NM_001004231 0016021 // integral to membrane // inferred from electronic annotation 1372774_at AI170570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170570 /DB_XREF=gi:3710610 /DB_XREF=EST216503 /CLONE=RMUAY08 /FEA=EST /CNT=16 /TID=Rn.9283.2 /TIER=Stack /STK=10 /UG=Rn.9283 /UG_TITLE=ESTs, Moderately similar to COQ6_HUMAN PUTATIVE UBIQUINONE BIOSYNTHESIS MONOOXGENASE COQ6 (H.sapiens) AI170570 Coenzyme Q6 homolog (yeast) Coq6 299195 NM_001011983 0006744 // ubiquinone biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0004497 // monooxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016709 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1372775_at AI172375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172375 /DB_XREF=gi:3712415 /DB_XREF=EST218380 /CLONE=RMUBY55 /FEA=EST /CNT=15 /TID=Rn.16796.1 /TIER=Stack /STK=10 /UG=Rn.16796 /UG_TITLE=ESTs, Highly similar to BRD3_HUMAN BROMODOMAIN-CONTAINING PROTEIN 3 (RING3-LIKE PROTEIN) (H.sapiens) AI172375 bromodomain containing 3 Brd3 362092 NM_001108575 0005515 // protein binding // not recorded 1372776_at BM392017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392017 /DB_XREF=gi:18192070 /DB_XREF=UI-R-DO1-cmk-k-08-0-UI.s1 /CLONE=UI-R-DO1-cmk-k-08-0-UI /FEA=EST /CNT=15 /TID=Rn.8259.1 /TIER=Stack /STK=10 /UG=Rn.8259 /UG_TITLE=ESTs BM392017 F-box and leucine-rich repeat protein 5 Fbxl5 305424 NM_001107222 0016567 // protein ubiquitination // not recorded /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0055072 // iron ion homeostasis // not recorded 0019005 // SCF ubiquitin ligase complex // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0005506 // iron ion binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372777_at BM385774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385774 /DB_XREF=gi:18185827 /DB_XREF=UI-R-CN1-clx-n-17-0-UI.s1 /CLONE=UI-R-CN1-clx-n-17-0-UI /FEA=EST /CNT=15 /TID=Rn.33820.1 /TIER=Stack /STK=10 /UG=Rn.33820 /UG_TITLE=ESTs BM385774 1372778_at AA799420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799420 /DB_XREF=gi:2862375 /DB_XREF=EST188917 /CLONE=RHEAA86 /FEA=EST /CNT=15 /TID=Rn.43952.1 /TIER=Stack /STK=10 /UG=Rn.43952 /UG_TITLE=ESTs AA799420 solute carrier family 39 (zinc transporter), member 1 Slc39a1 361986 NM_001134577 0006829 // zinc ion transport // inferred from electronic annotation /// 0006829 // zinc ion transport // not recorded /// 0015674 // di-, tri-valent inorganic cation transport // not recorded /// 0030001 // metal ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0071577 // zinc ion transmembrane transport // not recorded 0016020 // membrane // inferred from electronic annotation 0005102 // receptor binding // inferred from physical interaction /// 0005385 // zinc ion transmembrane transporter activity // inferred from electronic annotation /// 0005385 // zinc ion transmembrane transporter activity // not recorded /// 0046873 // metal ion transmembrane transporter activity // inferred from electronic annotation 1372779_at BG373352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373352 /DB_XREF=gi:13269889 /DB_XREF=UI-R-CV1-brx-g-06-0-UI.s1 /CLONE=UI-R-CV1-brx-g-06-0-UI /FEA=EST /CNT=14 /TID=Rn.1970.1 /TIER=Stack /STK=10 /UG=Rn.1970 /UG_TITLE=ESTs BG373352 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 B3gnt2 305571 NM_001107240 0006486 // protein glycosylation // inferred from electronic annotation /// 0006486 // protein glycosylation // not recorded /// 0007411 // axon guidance // not recorded /// 0007608 // sensory perception of smell // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008378 // galactosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1372780_at BM391310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391310 /DB_XREF=gi:18191363 /DB_XREF=UI-R-DY0-ckq-j-23-0-UI.s1 /CLONE=UI-R-DY0-ckq-j-23-0-UI /FEA=EST /CNT=14 /TID=Rn.8133.1 /TIER=Stack /STK=10 /UG=Rn.8133 /UG_TITLE=ESTs, Weakly similar to T10B11.6.p (Caenorhabditis elegans) (C.elegans) BM391310 transmembrane protein 53 Tmem53 313529 NM_001107964 0016021 // integral to membrane // inferred from electronic annotation 1372781_at BG378912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378912 /DB_XREF=gi:13303384 /DB_XREF=UI-R-CV1-bvu-d-08-0-UI.s1 /CLONE=UI-R-CV1-bvu-d-08-0-UI /FEA=EST /CNT=14 /TID=Rn.18637.1 /TIER=Stack /STK=10 /UG=Rn.18637 /UG_TITLE=ESTs BG378912 WD repeat domain 47 Wdr47 310785 NM_001100702 1372782_a_at BE111787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111787 /DB_XREF=gi:8503892 /DB_XREF=UI-R-BJ1-avx-g-10-0-UI.s1 /CLONE=UI-R-BJ1-avx-g-10-0-UI /FEA=EST /CNT=14 /TID=Rn.19218.1 /TIER=Stack /STK=10 /UG=Rn.19218 /UG_TITLE=ESTs, Highly similar to AMP DEAMINASE 2 (R.norvegicus) BE111787 adenosine monophosphate deaminase 2 (isoform L) Ampd2 362015 NM_001101681 0006144 // purine base metabolic process // inferred from electronic annotation /// 0009117 // nucleotide metabolic process // inferred from electronic annotation /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // inferred from electronic annotation 0003876 // AMP deaminase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016814 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines // inferred from electronic annotation /// 0019239 // deaminase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372783_at BM387109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387109 /DB_XREF=gi:18187162 /DB_XREF=UI-R-CN1-cji-o-06-0-UI.s1 /CLONE=UI-R-CN1-cji-o-06-0-UI /FEA=EST /CNT=14 /TID=Rn.11463.1 /TIER=Stack /STK=10 /UG=Rn.11463 /UG_TITLE=ESTs BM387109 La ribonucleoprotein domain family, member 5 Larp5 307070 NM_001107361 0003676 // nucleic acid binding // inferred from electronic annotation 1372784_at BM386669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386669 /DB_XREF=gi:18186722 /DB_XREF=UI-R-CN1-cjg-l-17-0-UI.s1 /CLONE=UI-R-CN1-cjg-l-17-0-UI /FEA=EST /CNT=14 /TID=Rn.1938.1 /TIER=Stack /STK=10 /UG=Rn.1938 /UG_TITLE=ESTs, Weakly similar to S52797 muf1 protein (H.sapiens) BM386669 leucine rich repeat containing 41 Lrrc41 362566 NM_001009710 1372785_at BG671790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671790 /DB_XREF=gi:13893889 /DB_XREF=DRNBYA06 /CLONE=DRNBYA06 /FEA=EST /CNT=14 /TID=Rn.3979.3 /TIER=Stack /STK=10 /UG=Rn.3979 /LL=114106 /UG_GENE=Bcdo /UG_TITLE=beta-carotene 15, 15-dioxygenase BG671790 ash1 (absent, small, or homeotic)-like (Drosophila) Ash1l 310638 NM_001107689 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372786_at BF284299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284299 /DB_XREF=gi:11215369 /DB_XREF=EST448890 /CLONE=RGIEO08 /FEA=EST /CNT=13 /TID=Rn.12863.1 /TIER=Stack /STK=10 /UG=Rn.12863 /UG_TITLE=ESTs, Weakly similar to Y39A1A.21.p (Caenorhabditis elegans) (C.elegans) BF284299 family with sequence similarity 173, member A Fam173a 287150 NM_001127447 1372787_at BE106508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106508 /DB_XREF=gi:8498610 /DB_XREF=UI-R-BO1-aso-g-11-0-UI.s1 /CLONE=UI-R-BO1-aso-g-11-0-UI /FEA=EST /CNT=13 /TID=Rn.23516.1 /TIER=Stack /STK=10 /UG=Rn.23516 /UG_TITLE=ESTs, Weakly similar to T24273 hypothetical protein T01B7.5 - Caenorhabditis elegans (C.elegans) BE106508 UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae) Utp3 305258 NM_001012036 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from sequence or structural similarity /// 0007420 // brain development // inferred from electronic annotation /// 0016458 // gene silencing // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372788_at AI144725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144725 /DB_XREF=gi:3666524 /DB_XREF=UI-R-BT0-po-c-01-0-UI.s1 /CLONE=UI-R-BT0-po-c-01-0-UI /FEA=EST /CNT=13 /TID=Rn.19034.1 /TIER=Stack /STK=10 /UG=Rn.19034 /UG_TITLE=ESTs AI144725 1372789_at BF397881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397881 /DB_XREF=gi:11382866 /DB_XREF=UI-R-BS2-bec-g-02-0-UI.s1 /CLONE=UI-R-BS2-bec-g-02-0-UI /FEA=EST /CNT=13 /TID=Rn.765.1 /TIER=Stack /STK=10 /UG=Rn.765 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) BF397881 zinc finger protein 637 Zfp637 362425 NM_001134908 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1372790_at BG671530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671530 /DB_XREF=gi:13893629 /DB_XREF=DRNBTG07 /CLONE=DRNBTG07 /FEA=EST /CNT=13 /TID=Rn.13492.1 /TIER=Stack /STK=10 /UG=Rn.13492 /UG_TITLE=ESTs BG671530 1372791_at AI235474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235474 /DB_XREF=gi:3828980 /DB_XREF=EST232036 /CLONE=ROVCS28 /FEA=EST /CNT=13 /TID=Rn.4164.1 /TIER=Stack /STK=10 /UG=Rn.4164 /UG_TITLE=ESTs AI235474 WNK lysine deficient protein kinase 1 Wnk1 116477 NM_001002823 /// NM_053794 0003084 // positive regulation of systemic arterial blood pressure // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006811 // ion transport // inferred from sequence or structural similarity /// 0007243 // intracellular protein kinase cascade // inferred from direct assay /// 0007243 // intracellular protein kinase cascade // not recorded /// 0033673 // negative regulation of kinase activity // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0050794 // regulation of cellular process // inferred from sequence or structural similarity 0005625 // soluble fraction // not recorded /// 0005626 // insoluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0042598 // vesicular fraction // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from mutant phenotype /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019870 // potassium channel inhibitor activity // inferred from direct assay /// 0030291 // protein serine/threonine kinase inhibitor activity // inferred from direct assay 1372792_at BI279648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279648 /DB_XREF=gi:14927664 /DB_XREF=UI-R-DE0-caf-a-07-0-UI.s1 /CLONE=UI-R-DE0-caf-a-07-0-UI /FEA=EST /CNT=13 /TID=Rn.34142.1 /TIER=Stack /STK=10 /UG=Rn.34142 /UG_TITLE=ESTs BI279648 alkB, alkylation repair homolog 6 (E. coli) Alkbh6 292780 NM_001127450 0010302 // 2-oxoglutarate-dependent dioxygenase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1372793_at BE108903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108903 /DB_XREF=gi:8501008 /DB_XREF=UI-R-BS1-ayz-g-02-0-UI.s1 /CLONE=UI-R-BS1-ayz-g-02-0-UI /FEA=EST /CNT=13 /TID=Rn.12937.1 /TIER=Stack /STK=10 /UG=Rn.12937 /UG_TITLE=ESTs, Highly similar to SSB RAT SINGLE-STRANDED DNA-BINDING PROTEIN, MITOCHONDRIAL PRECURSOR (R.norvegicus) BE108903 single-stranded DNA binding protein 1 Ssbp1 54304 NM_183328 0006260 // DNA replication // inferred from electronic annotation /// 0051096 // positive regulation of helicase activity // not recorded /// 0070584 // mitochondrion morphogenesis // not recorded 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // non-traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // non-traceable author statement 1372794_at BM392203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392203 /DB_XREF=gi:18192256 /DB_XREF=UI-R-DO1-ckp-o-14-0-UI.s1 /CLONE=UI-R-DO1-ckp-o-14-0-UI /FEA=EST /CNT=13 /TID=Rn.1231.2 /TIER=Stack /STK=10 /UG=Rn.1231 /LL=25407 /UG_GENE=Cd59 /UG_TITLE=CD59 antigen BM392203 death-associated kinase 2 Dapk2 300799 NM_001013109 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation 1372795_at BF285089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285089 /DB_XREF=gi:11216159 /DB_XREF=EST449680 /CLONE=RGIFA31 /FEA=EST /CNT=13 /TID=Rn.7305.1 /TIER=Stack /STK=10 /UG=Rn.7305 /UG_TITLE=ESTs BF285089 thioredoxin-like 4B Txnl4b 292008 NM_001013891 0007067 // mitosis // inferred from electronic annotation 0005681 // spliceosomal complex // inferred from electronic annotation 1372796_at AA894188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894188 /DB_XREF=gi:3021067 /DB_XREF=EST197991 /CLONE=RSPAS34 /FEA=EST /CNT=13 /TID=Rn.7339.1 /TIER=Stack /STK=10 /UG=Rn.7339 /UG_TITLE=ESTs AA894188 1372797_at BM383862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383862 /DB_XREF=gi:18183915 /DB_XREF=UI-R-DM1-ckc-e-16-0-UI.s1 /CLONE=UI-R-DM1-ckc-e-16-0-UI /FEA=EST /CNT=13 /TID=Rn.11769.1 /TIER=Stack /STK=10 /UG=Rn.11769 /UG_TITLE=ESTs, Weakly similar to T28709 hypothetical protein T21D12.3 - Caenorhabditis elegans (C.elegans) BM383862 polyglutamine binding protein 1 Pqbp1 302557 NM_001013957 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation 1372798_at BF282715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282715 /DB_XREF=gi:11213785 /DB_XREF=EST447306 /CLONE=RGIDS08 /FEA=EST /CNT=13 /TID=Rn.22088.1 /TIER=Stack /STK=10 /UG=Rn.22088 /UG_TITLE=ESTs BF282715 zinc finger, DHHC-type containing 16 Zdhhc16 654495 NM_001039346 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372799_at BF285179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285179 /DB_XREF=gi:11216249 /DB_XREF=EST449770 /CLONE=RGIFB43 /FEA=EST /CNT=13 /TID=Rn.6770.1 /TIER=Stack /STK=10 /UG=Rn.6770 /UG_TITLE=ESTs, Weakly similar to deoxycytidine kinase (Rattus norvegicus) (R.norvegicus) BF285179 deoxyguanosine kinase Dguok 297389 NM_001106602 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0010977 // negative regulation of neuron projection development // inferred from mutant phenotype /// 0046070 // dGTP metabolic process // not recorded 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded 0004138 // deoxyguanosine kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1372800_at BF416139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416139 /DB_XREF=gi:11404128 /DB_XREF=UI-R-CA0-bkq-f-10-0-UI.s1 /CLONE=UI-R-CA0-bkq-f-10-0-UI /FEA=EST /CNT=13 /TID=Rn.56086.1 /TIER=Stack /STK=10 /UG=Rn.56086 /UG_TITLE=ESTs BF416139 Meis homeobox 3 Meis3 361514 NM_001108472 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1372801_at AI171256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171256 /DB_XREF=gi:4134600 /DB_XREF=EST217211 /CLONE=RMUBI20 /FEA=EST /CNT=13 /TID=Rn.3499.1 /TIER=Stack /STK=10 /UG=Rn.3499 /UG_TITLE=ESTs AI171256 COMM domain containing 10 Commd10 361323 NM_001004276 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372802_at AI172500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172500 /DB_XREF=gi:3712540 /DB_XREF=EST218513 /CLONE=RMUCA60 /FEA=EST /CNT=13 /TID=Rn.22370.1 /TIER=Stack /STK=10 /UG=Rn.22370 /UG_TITLE=ESTs AI172500 zinc finger protein 512 Znf512 313906 XM_001068079 /// XM_233885 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1372803_at BF281969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281969 /DB_XREF=gi:11213039 /DB_XREF=EST446560 /CLONE=RGIDA21 /FEA=EST /CNT=13 /TID=Rn.35882.1 /TIER=Stack /STK=10 /UG=Rn.35882 /UG_TITLE=ESTs, Weakly similar to T16188 hypothetical protein F27D9.6 - Caenorhabditis elegans (C.elegans) BF281969 similar to DNA segment, Chr 14, ERATO Doi 449, expressed RGD1305689 290529 NM_001008297 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1372804_at AI175555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175555 /DB_XREF=gi:3726193 /DB_XREF=EST219110 /CLONE=RMUCO92 /FEA=EST /CNT=13 /TID=Rn.13090.1 /TIER=Stack /STK=10 /UG=Rn.13090 /UG_TITLE=ESTs, Weakly similar to T27023 hypothetical protein Y48E1B.2a - Caenorhabditis elegans (C.elegans) AI175555 MMR_HSR1 domain containing protein RGD1359460 RGD1359460 289562 NM_001006959 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded 1372805_at BE328984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE328984 /DB_XREF=gi:9202760 /DB_XREF=hq35g01.x1 /CLONE=IMAGE:3121392 /FEA=EST /CNT=24 /TID=Rn.3106.1 /TIER=Stack /STK=10 /UG=Rn.3106 /UG_TITLE=ESTs BE328984 1372806_at AA955295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955295 /DB_XREF=gi:4237657 /DB_XREF=UI-R-A1-ej-d-07-0-UI.s1 /CLONE=UI-R-A1-ej-d-07-0-UI /FEA=EST /CNT=19 /TID=Rn.8419.1 /TIER=Stack /STK=10 /UG=Rn.8419 /UG_TITLE=ESTs, Weakly similar to T34314 hypothetical protein F59G1.3 - Caenorhabditis elegans (C.elegans) AA955295 vacuolar protein sorting 35 homolog (S. cerevisiae) Vps35 25479 NM_001105718 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372807_at BF402462 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402462 /DB_XREF=gi:11390437 /DB_XREF=UI-R-CA0-bhp-e-09-0-UI.s1 /CLONE=UI-R-CA0-bhp-e-09-0-UI /FEA=EST /CNT=17 /TID=Rn.11073.2 /TIER=Stack /STK=10 /UG=Rn.11073 /LL=29232 /UG_GENE=Clcn2 /UG_TITLE=chloride channel 2 BF402462 rCG36585-like LOC100364604 100364604 XM_002724744 1372808_at AW251324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251324 /DB_XREF=gi:6594915 /DB_XREF=UI-R-BJ0-adg-g-12-0-UI.s1 /CLONE=UI-R-BJ0-adg-g-12-0-UI /FEA=EST /CNT=16 /TID=Rn.11744.1 /TIER=Stack /STK=10 /UG=Rn.11744 /UG_TITLE=ESTs, Highly similar to NAD-DEPENDENT METHYLENETETRAHYDROFOLATE DEHYDROGENASE METHENYLTETRAHYDROFOLATE CYCLOHYDROLASE MITOCHONDRIAL PRECURSOR (M.musculus) AW251324 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase Mthfd2 680308 NM_001109398 0008152 // metabolic process // inferred from electronic annotation /// 0009396 // folic acid and derivative biosynthetic process // inferred from electronic annotation /// 0009408 // response to heat // inferred from expression pattern /// 0046653 // tetrahydrofolate metabolic process // not recorded 0005739 // mitochondrion // not recorded 0000287 // magnesium ion binding // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004477 // methenyltetrahydrofolate cyclohydrolase activity // inferred from electronic annotation /// 0004487 // methylenetetrahydrofolate dehydrogenase (NAD+) activity // not recorded /// 0004488 // methylenetetrahydrofolate dehydrogenase (NADP+) activity // inferred from electronic annotation /// 0004488 // methylenetetrahydrofolate dehydrogenase (NADP+) activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042301 // phosphate binding // not recorded 1372809_at AI716200 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716200 /DB_XREF=gi:5033453 /DB_XREF=UI-R-Y0-abl-g-11-0-UI.s2 /CLONE=UI-R-Y0-abl-g-11-0-UI /FEA=EST /CNT=16 /TID=Rn.9572.1 /TIER=Stack /STK=10 /UG=Rn.9572 /UG_TITLE=ESTs, Weakly similar to ABD4 MOUSE ATP-BINDING CASSETTE, SUB-FAMILY D, MEMBER 4 (M.musculus) AI716200 hypothetical gene supported by AF152002 LOC290595 290595 NM_001106063 1372810_at BF281256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281256 /DB_XREF=gi:11212242 /DB_XREF=EST445763 /CLONE=RGIAA91 /FEA=EST /CNT=15 /TID=Rn.16833.1 /TIER=Stack /STK=10 /UG=Rn.16833 /UG_TITLE=ESTs, Weakly similar to HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN C (R.norvegicus) BF281256 heterogeneous nuclear ribonucleoprotein D-like Hnrpdl 305178 NM_001033696 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372811_at BI289779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289779 /DB_XREF=gi:14947710 /DB_XREF=UI-R-DK0-cfo-b-03-0-UI.s1 /CLONE=UI-R-DK0-cfo-b-03-0-UI /FEA=EST /CNT=15 /TID=Rn.23689.1 /TIER=Stack /STK=10 /UG=Rn.23689 /UG_TITLE=ESTs, Moderately similar to S32763 kinectin 1 (H.sapiens) BI289779 kinectin 1 Ktn1 361029 XM_001073656 /// XM_341305 1372812_at H33148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33148 /DB_XREF=gi:978565 /DB_XREF=EST108861 /CLONE=RPNAI10 /FEA=EST /CNT=15 /TID=Rn.12921.1 /TIER=Stack /STK=10 /UG=Rn.12921 /UG_TITLE=ESTs, Moderately similar to Y256_HUMAN HYPOTHETICAL PROTEIN KIAA0256 (H.sapiens) H33148 SECIS binding protein 2-like Secisbp2l 296115 NM_001168527 1372813_at AA858862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858862 /DB_XREF=gi:4229055 /DB_XREF=UI-R-A0-bd-a-03-0-UI.s1 /CLONE=UI-R-A0-bd-a-03-0-UI /FEA=EST /CNT=15 /TID=Rn.2443.1 /TIER=Stack /STK=10 /UG=Rn.2443 /UG_TITLE=ESTs AA858862 similar to RIKEN cDNA 1810046J19 RGD1306682 360617 NM_001108296 0045454 // cell redox homeostasis // inferred from electronic annotation 0008430 // selenium binding // inferred from electronic annotation 1372814_at BF283084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283084 /DB_XREF=gi:11214154 /DB_XREF=EST447675 /CLONE=RGIDX28 /FEA=EST /CNT=15 /TID=Rn.8424.1 /TIER=Stack /STK=10 /UG=Rn.8424 /UG_TITLE=ESTs BF283084 SFT2 domain containing 2 Sft2d2 360868 NM_001034011 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1372815_at BG673028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG673028 /DB_XREF=gi:13895127 /DB_XREF=DRNBHF09 /CLONE=DRNBHF09 /FEA=EST /CNT=14 /TID=Rn.8332.1 /TIER=Stack /STK=10 /UG=Rn.8332 /UG_TITLE=ESTs, Highly similar to MGN_HUMAN MAGO NASHI PROTEIN HOMOLOG (M.musculus) BG673028 mago-nashi homolog, proliferation-associated (Drosophila) Magoh 298385 NM_001100536 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation /// 0035145 // exon-exon junction complex // inferred from electronic annotation /// 0035145 // exon-exon junction complex // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372816_at BE107319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107319 /DB_XREF=gi:8499424 /DB_XREF=UI-R-BS1-ays-d-06-0-UI.s1 /CLONE=UI-R-BS1-ays-d-06-0-UI /FEA=EST /CNT=13 /TID=Rn.49278.1 /TIER=Stack /STK=10 /UG=Rn.49278 /UG_TITLE=ESTs BE107319 1372817_at BI291616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291616 /DB_XREF=gi:14951328 /DB_XREF=UI-R-DN0-ciu-f-15-0-UI.s1 /CLONE=UI-R-DN0-ciu-f-15-0-UI /FEA=EST /CNT=13 /TID=Rn.6701.1 /TIER=Stack /STK=10 /UG=Rn.6701 /UG_TITLE=ESTs BI291616 zinc finger protein 260 Zfp260 53982 NM_017364 0006350 // transcription // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372818_at BI284441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284441 /DB_XREF=gi:14937123 /DB_XREF=UI-R-CX0s-ccr-b-05-0-UI.s1 /CLONE=UI-R-CX0s-ccr-b-05-0-UI /FEA=EST /CNT=13 /TID=Rn.31273.1 /TIER=Stack /STK=10 /UG=Rn.31273 /UG_TITLE=ESTs, Weakly similar to KUCR RAT KUPFFER CELL RECEPTOR (R.norvegicus) BI284441 collectin sub-family member 12 Colec12 361289 NM_001025721 0006910 // phagocytosis, recognition // not recorded /// 0006910 // phagocytosis, recognition // inferred from sequence or structural similarity /// 0006910 // phagocytosis, recognition // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0006955 // immune response // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0008329 // pattern recognition receptor activity // not recorded /// 0008329 // pattern recognition receptor activity // inferred from sequence or structural similarity /// 0008329 // pattern recognition receptor activity // inferred from electronic annotation /// 0030169 // low-density lipoprotein binding // not recorded /// 0030169 // low-density lipoprotein binding // inferred from sequence or structural similarity /// 0030169 // low-density lipoprotein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372819_at BM382870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM382870 /DB_XREF=gi:18182923 /DB_XREF=UI-R-BT1-bko-g-08-0-UI.s1 /CLONE=UI-R-BT1-bko-g-08-0-UI /FEA=EST /CNT=13 /TID=Rn.9370.1 /TIER=Stack /STK=10 /UG=Rn.9370 /UG_TITLE=ESTs, Highly similar to T08750 hypothetical protein DKFZp586E1519.1 (H.sapiens) BM382870 component of oligomeric golgi complex 4 Cog4 361407 NM_001108449 0006890 // retrograde vesicle-mediated transport, Golgi to ER // not recorded /// 0007030 // Golgi organization // not recorded /// 0048213 // Golgi vesicle prefusion complex stabilization // not recorded 0017119 // Golgi transport complex // not recorded 0005515 // protein binding // not recorded 1372820_at BE109102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109102 /DB_XREF=gi:8501207 /DB_XREF=UI-R-BS1-azb-a-05-0-UI.s1 /CLONE=UI-R-BS1-azb-a-05-0-UI /FEA=EST /CNT=13 /TID=Rn.3225.1 /TIER=Stack /STK=10 /UG=Rn.3225 /UG_TITLE=ESTs BE109102 1372821_at AI236621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236621 /DB_XREF=gi:3830127 /DB_XREF=EST233183 /CLONE=ROVDI43 /FEA=EST /CNT=13 /TID=Rn.17533.1 /TIER=Stack /STK=10 /UG=Rn.17533 /UG_TITLE=ESTs AI236621 Cyclin Y Ccny 361261 NM_001191833 /// XM_001065252 /// XM_341545 0000086 // G2/M transition of mitotic cell cycle // not recorded /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // not recorded /// 0060828 // regulation of canonical Wnt receptor signaling pathway // not recorded 0000308 // cytoplasmic cyclin-dependent protein kinase holoenzyme complex // not recorded /// 0005634 // nucleus // not recorded /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // not recorded /// 0016538 // cyclin-dependent protein kinase regulator activity // not recorded 1372822_at BI287226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287226 /DB_XREF=gi:14942637 /DB_XREF=UI-R-CW0s-ccl-d-08-0-UI.s1 /CLONE=UI-R-CW0s-ccl-d-08-0-UI /FEA=EST /CNT=13 /TID=Rn.8697.1 /TIER=Stack /STK=10 /UG=Rn.8697 /UG_TITLE=ESTs BI287226 1372823_at BE117126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117126 /DB_XREF=gi:8509231 /DB_XREF=UI-R-BS1-aym-b-05-0-UI.s1 /CLONE=UI-R-BS1-aym-b-05-0-UI /FEA=EST /CNT=13 /TID=Rn.11699.1 /TIER=Stack /STK=10 /UG=Rn.11699 /UG_TITLE=ESTs, Weakly similar to l(3)S12 protein (D.melanogaster) BE117126 1372824_at AI103367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103367 /DB_XREF=gi:3707918 /DB_XREF=EST212656 /CLONE=REMCB15 /FEA=EST /CNT=13 /TID=Rn.11991.1 /TIER=Stack /STK=10 /UG=Rn.11991 /UG_TITLE=ESTs AI103367 pleckstrin homology domain containing, family F (with FYVE domain) member 2 Plekhf2 362484 NM_001108655 0030133 // transport vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372825_at BI290551 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290551 /DB_XREF=gi:14949226 /DB_XREF=UI-R-DK0-cgd-e-11-0-UI.s1 /CLONE=UI-R-DK0-cgd-e-11-0-UI /FEA=EST /CNT=13 /TID=Rn.17181.1 /TIER=Stack /STK=10 /UG=Rn.17181 /UG_TITLE=ESTs BI290551 Formin binding protein 1 Fnbp1 192348 NM_138914 0006897 // endocytosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from direct assay /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1372826_at BI285718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285718 /DB_XREF=gi:14939643 /DB_XREF=UI-R-CT0s-cas-g-10-0-UI.s1 /CLONE=UI-R-CT0s-cas-g-10-0-UI /FEA=EST /CNT=12 /TID=Rn.4237.1 /TIER=Stack /STK=10 /UG=Rn.4237 /UG_TITLE=ESTs, Weakly similar to T46904 hypothetical protein DKFZp761D081.1 (H.sapiens) BI285718 similar to zinc ring finger protein 1 LOC690769 690769 XM_001075556 /// XM_002725417 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372827_at AA957342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957342 /DB_XREF=gi:4277232 /DB_XREF=UI-R-E1-fu-h-10-0-UI.s1 /CLONE=UI-R-E1-fu-h-10-0-UI /FEA=EST /CNT=12 /TID=Rn.7995.1 /TIER=Stack /STK=10 /UG=Rn.7995 /UG_TITLE=ESTs, Weakly similar to S14529 transition protein 2 - mouse (M.musculus) AA957342 peptidylprolyl isomerase D (cyclophilin D) Ppid 361967 NM_001004279 0006457 // protein folding // traceable author statement /// 0006457 // protein folding // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0006916 // anti-apoptosis // traceable author statement /// 0006979 // response to oxidative stress // inferred from mutant phenotype /// 0051881 // regulation of mitochondrial membrane potential // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from mutant phenotype 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from direct assay /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // traceable author statement /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from electronic annotation 1372828_at BM389609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389609 /DB_XREF=gi:18189662 /DB_XREF=UI-R-CN1-cjo-c-09-0-UI.s1 /CLONE=UI-R-CN1-cjo-c-09-0-UI /FEA=EST /CNT=12 /TID=Rn.23802.1 /TIER=Stack /STK=10 /UG=Rn.23802 /UG_TITLE=ESTs, Moderately similar to YCD1_HUMAN HYPOTHETICAL PROTEIN CGI-131 (H.sapiens) BM389609 methionine sulfoxide reductase B2 Msrb2 361286 NM_001031660 0030091 // protein repair // inferred from electronic annotation /// 0030091 // protein repair // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000318 // protein-methionine-R-oxide reductase activity // inferred from electronic annotation /// 0000318 // protein-methionine-R-oxide reductase activity // not recorded /// 0008113 // peptide-methionine-(S)-S-oxide reductase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372829_at BE113079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113079 /DB_XREF=gi:8505184 /DB_XREF=UI-R-BJ1-awb-b-12-0-UI.s1 /CLONE=UI-R-BJ1-awb-b-12-0-UI /FEA=EST /CNT=12 /TID=Rn.37716.1 /TIER=Stack /STK=10 /UG=Rn.37716 /UG_TITLE=ESTs, Weakly similar to NUCL RAT NUCLEOLIN (R.norvegicus) BE113079 RNA binding motif protein 8A Rbm8a 295284 XM_001059872 /// XM_215637 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation /// 0035145 // exon-exon junction complex // inferred from electronic annotation /// 0035145 // exon-exon junction complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372830_at BM384116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384116 /DB_XREF=gi:18184169 /DB_XREF=UI-R-DZ0-cks-h-17-0-UI.s1 /CLONE=UI-R-DZ0-cks-h-17-0-UI /FEA=EST /CNT=12 /TID=Rn.22276.1 /TIER=Stack /STK=10 /UG=Rn.22276 /UG_TITLE=ESTs BM384116 ADP-ribosylation factor-like 6 interacting protein 1 Arl6ip1 293551 NM_198737 0006613 // cotranslational protein targeting to membrane // inferred from electronic annotation /// 0006613 // cotranslational protein targeting to membrane // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005784 // Sec61 translocon complex // inferred from electronic annotation /// 0005784 // Sec61 translocon complex // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372831_at BE349838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE349838 /DB_XREF=gi:9261691 /DB_XREF=hq43g09.x1 /CLONE=IMAGE:3122176 /FEA=EST /CNT=12 /TID=Rn.20180.1 /TIER=Stack /STK=10 /UG=Rn.20180 /UG_TITLE=ESTs BE349838 1372832_at BI278868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278868 /DB_XREF=gi:14926131 /DB_XREF=UI-R-CX0-bwx-h-04-0-UI.s1 /CLONE=UI-R-CX0-bwx-h-04-0-UI /FEA=EST /CNT=12 /TID=Rn.19769.1 /TIER=Stack /STK=10 /UG=Rn.19769 /UG_TITLE=ESTs BI278868 1372833_at AW521376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521376 /DB_XREF=gi:7163754 /DB_XREF=UI-R-BO0-agl-g-08-0-UI.s1 /CLONE=UI-R-BO0-agl-g-08-0-UI /FEA=EST /CNT=12 /TID=Rn.14625.1 /TIER=Stack /STK=10 /UG=Rn.14625 /UG_TITLE=ESTs AW521376 1372834_at BI304063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI304063 /DB_XREF=gi:14980343 /DB_XREF=UI-R-DR0-cjc-m-24-0-UI.s1 /CLONE=UI-R-DR0-cjc-m-24-0-UI /FEA=EST /CNT=12 /TID=Rn.25893.1 /TIER=Stack /STK=10 /UG=Rn.25893 /UG_TITLE=ESTs BI304063 vacuolar protein sorting 4 homolog B (S. cerevisiae) Vps4b 360834 NM_001025716 0006200 // ATP catabolic process // not recorded /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // not recorded /// 0007032 // endosome organization // inferred from electronic annotation /// 0007032 // endosome organization // not recorded /// 0016197 // endosome transport // inferred from electronic annotation /// 0016197 // endosome transport // not recorded /// 0030301 // cholesterol transport // not recorded /// 0030301 // cholesterol transport // inferred from electronic annotation /// 0032367 // intracellular cholesterol transport // inferred from electronic annotation /// 0032367 // intracellular cholesterol transport // not recorded /// 0032510 // endosome to lysosome transport via multivesicular body sorting pathway // inferred from electronic annotation /// 0032510 // endosome to lysosome transport via multivesicular body sorting pathway // not recorded /// 0033993 // response to lipid // inferred from electronic annotation /// 0033993 // response to lipid // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005770 // late endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005774 // vacuolar membrane // inferred from electronic annotation /// 0005774 // vacuolar membrane // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0010008 // endosome membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1372835_at BM389644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389644 /DB_XREF=gi:18189697 /DB_XREF=UI-R-CN1-cjo-k-01-0-UI.s1 /CLONE=UI-R-CN1-cjo-k-01-0-UI /FEA=EST /CNT=12 /TID=Rn.6890.1 /TIER=Stack /STK=10 /UG=Rn.6890 /UG_TITLE=ESTs BM389644 ras homolog gene family, member J Rhoj 299145 NM_001008320 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // not recorded /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1372836_at AI170399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170399 /DB_XREF=gi:3710439 /DB_XREF=EST216325 /CLONE=RLUCH81 /FEA=EST /CNT=12 /TID=Rn.9547.1 /TIER=Stack /STK=10 /UG=Rn.9547 /UG_TITLE=ESTs AI170399 1372837_at BI277033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277033 /DB_XREF=gi:14922519 /DB_XREF=UI-R-CY0-bxp-d-09-0-UI.s1 /CLONE=UI-R-CY0-bxp-d-09-0-UI /FEA=EST /CNT=12 /TID=Rn.40475.1 /TIER=Stack /STK=10 /UG=Rn.40475 /UG_TITLE=ESTs BI277033 WD repeat and FYVE domain containing 2 Wdfy2 305956 NM_001107269 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372838_at AI227902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227902 /DB_XREF=gi:3811789 /DB_XREF=EST224597 /CLONE=RBRCN37 /FEA=EST /CNT=12 /TID=Rn.12742.1 /TIER=Stack /STK=10 /UG=Rn.12742 /UG_TITLE=ESTs AI227902 1372839_at BG379352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379352 /DB_XREF=gi:13303824 /DB_XREF=UI-R-CS0-btu-g-11-0-UI.s1 /CLONE=UI-R-CS0-btu-g-11-0-UI /FEA=EST /CNT=12 /TID=Rn.8870.1 /TIER=Stack /STK=10 /UG=Rn.8870 /UG_TITLE=ESTs BG379352 mitochondrial ribosomal protein S35 Mrps35 297727 NM_001106628 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 1372840_at AI170289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170289 /DB_XREF=gi:4134487 /DB_XREF=EST216215 /CLONE=RLUCG54 /FEA=EST /CNT=12 /TID=Rn.3708.1 /TIER=Stack /STK=10 /UG=Rn.3708 /UG_TITLE=ESTs AI170289 zinc finger, BED-type containing 4 Zbed4 315211 NM_001134800 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1372841_at BG376982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376982 /DB_XREF=gi:13301454 /DB_XREF=UI-R-CU0-bvl-g-12-0-UI.s1 /CLONE=UI-R-CU0-bvl-g-12-0-UI /FEA=EST /CNT=12 /TID=Rn.9353.1 /TIER=Stack /STK=10 /UG=Rn.9353 /UG_TITLE=ESTs BG376982 receptor accessory protein 6 Reep6 362835 NM_001013218 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1372842_at BI285898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285898 /DB_XREF=gi:14940006 /DB_XREF=UI-R-CX0s-ccp-b-05-0-UI.s1 /CLONE=UI-R-CX0s-ccp-b-05-0-UI /FEA=EST /CNT=12 /TID=Rn.18029.1 /TIER=Stack /STK=10 /UG=Rn.18029 /UG_TITLE=ESTs BI285898 pregnancy-specific beta 1-glycoprotein Psgb1 59313 NM_021677 0007565 // female pregnancy // inferred from electronic annotation 1372843_at BG377188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377188 /DB_XREF=gi:13301660 /DB_XREF=UI-R-CU0-bvb-e-08-0-UI.s1 /CLONE=UI-R-CU0-bvb-e-08-0-UI /FEA=EST /CNT=12 /TID=Rn.24677.1 /TIER=Stack /STK=10 /UG=Rn.24677 /UG_TITLE=ESTs BG377188 LOC363020 RGD1309410 363020 NM_001134584 1372844_at AW531877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531877 /DB_XREF=gi:7174291 /DB_XREF=UI-R-BS0-amj-c-12-0-UI.s1 /CLONE=UI-R-BS0-amj-c-12-0-UI /FEA=EST /CNT=12 /TID=Rn.8427.2 /TIER=Stack /STK=10 /UG=Rn.8427 /LL=94268 /UG_GENE=Efna1 /UG_TITLE=ephrin A1 AW531877 ephrin A1 Efna1 94268 NM_053599 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0001525 // angiogenesis // non-traceable author statement /// 0001525 // angiogenesis // inferred from electronic annotation /// 0014028 // notochord formation // inferred from electronic annotation /// 0014028 // notochord formation // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0043535 // regulation of blood vessel endothelial cell migration // inferred from electronic annotation /// 0043535 // regulation of blood vessel endothelial cell migration // not recorded /// 0045765 // regulation of angiogenesis // inferred from electronic annotation /// 0045765 // regulation of angiogenesis // not recorded /// 0048013 // ephrin receptor signaling pathway // inferred from electronic annotation /// 0048013 // ephrin receptor signaling pathway // not recorded /// 0050770 // regulation of axonogenesis // inferred from electronic annotation /// 0050770 // regulation of axonogenesis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0046658 // anchored to plasma membrane // inferred from electronic annotation /// 0046658 // anchored to plasma membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046875 // ephrin receptor binding // traceable author statement 1372845_at BG380782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380782 /DB_XREF=gi:13305254 /DB_XREF=UI-R-CT0-bub-d-03-0-UI.s1 /CLONE=UI-R-CT0-bub-d-03-0-UI /FEA=EST /CNT=12 /TID=Rn.3720.1 /TIER=Stack /STK=10 /UG=Rn.3720 /UG_TITLE=ESTs BG380782 ribonuclease P 21 subunit (human) Rpp21 406230 NM_001002831 0042493 // response to drug // not recorded 0005515 // protein binding // not recorded 1372846_at AI179227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179227 /DB_XREF=gi:3729865 /DB_XREF=EST222918 /CLONE=RSPCE01 /FEA=EST /CNT=12 /TID=Rn.13816.1 /TIER=Stack /STK=10 /UG=Rn.13816 /UG_TITLE=ESTs AI179227 cytochrome b, ascorbate dependent 3 Cybasc3 361729 NM_001014164 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372847_at AW524458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524458 /DB_XREF=gi:7166843 /DB_XREF=UI-R-BO0-ahx-f-07-0-UI.s1 /CLONE=UI-R-BO0-ahx-f-07-0-UI /FEA=EST /CNT=12 /TID=Rn.806.1 /TIER=Stack /STK=10 /UG=Rn.806 /UG_TITLE=ESTs, Moderately similar to UBPI_MOUSE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 18 (UBIQUITIN THIOLESTERASE 18) (UBIQUITIN-SPECIFIC PROCESSING PROTEASE 18) (DEUBIQUITINATING ENZYME 18) (43 KDA UBIQUITIN-SPECIFIC PROTEASE) (M.musculus) AW524458 ACN9 homolog (S. cerevisiae) Acn9 362323 NM_001047914 0005739 // mitochondrion // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // inferred from sequence or structural similarity 1372848_at BI296915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296915 /DB_XREF=gi:14961814 /DB_XREF=UI-R-DK0-cgj-a-09-0-UI.s1 /CLONE=UI-R-DK0-cgj-a-09-0-UI /FEA=EST /CNT=12 /TID=Rn.22400.1 /TIER=Stack /STK=10 /UG=Rn.22400 /UG_TITLE=ESTs BI296915 hypothetical LOC314472 RGD1310269 314472 NM_001126280 1372849_at AI229183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229183 /DB_XREF=gi:3813070 /DB_XREF=EST225878 /CLONE=RBRDF18 /FEA=EST /CNT=12 /TID=Rn.791.1 /TIER=Stack /STK=10 /UG=Rn.791 /UG_TITLE=ESTs AI229183 1372850_at AA799464 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799464 /DB_XREF=gi:2862419 /DB_XREF=EST188961 /CLONE=RHEAB35 /FEA=EST /CNT=12 /TID=Rn.3792.1 /TIER=Stack /STK=10 /UG=Rn.3792 /UG_TITLE=ESTs AA799464 hypothetical LOC100151767 LOC100151767 100151767 NM_001127503 1372851_at AI412931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412931 /DB_XREF=gi:4256435 /DB_XREF=EST241231 /CLONE=RKIEG59 /FEA=EST /CNT=12 /TID=Rn.8676.1 /TIER=Stack /STK=10 /UG=Rn.8676 /UG_TITLE=ESTs AI412931 1372852_at BF417048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417048 /DB_XREF=gi:11405037 /DB_XREF=UI-R-CN0-blb-c-12-0-UI.s1 /CLONE=UI-R-CN0-blb-c-12-0-UI /FEA=EST /CNT=12 /TID=Rn.4188.1 /TIER=Stack /STK=10 /UG=Rn.4188 /UG_TITLE=ESTs, Weakly similar to KS6 RAT RIBOSOMAL PROTEIN S6 KINASE I (R.norvegicus) BF417048 protein tyrosine phosphatase, receptor type, C-associated protein Ptprcap 499300 NM_001024289 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation 1372853_at BF283772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283772 /DB_XREF=gi:11214842 /DB_XREF=EST448363 /CLONE=RGIEG64 /FEA=EST /CNT=12 /TID=Rn.19480.1 /TIER=Stack /STK=10 /UG=Rn.19480 /UG_TITLE=ESTs BF283772 v-rel reticuloendotheliosis viral oncogene homolog A (avian) Rela 309165 NM_199267 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0001942 // hair follicle development // inferred from electronic annotation /// 0001942 // hair follicle development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006950 // response to stress // inferred from expression pattern /// 0006952 // defense response // not recorded /// 0006952 // defense response // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0007568 // aging // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009617 // response to bacterium // inferred from electronic annotation /// 0009617 // response to bacterium // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0010033 // response to organic substance // not recorded /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010224 // response to UV-B // inferred from electronic annotation /// 0010224 // response to UV-B // not recorded /// 0014040 // positive regulation of Schwann cell differentiation // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0031293 // membrane protein intracellular domain proteolysis // not recorded /// 0032332 // positive regulation of chondrocyte differentiation // inferred from mutant phenotype /// 0032495 // response to muramyl dipeptide // inferred from electronic annotation /// 0032495 // response to muramyl dipeptide // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0032582 // negative regulation of gene-specific transcription // inferred from electronic annotation /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0033590 // response to cobalamin // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042177 // negative regulation of protein catabolic process // inferred from electronic annotation /// 0042177 // negative regulation of protein catabolic process // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043278 // response to morphine // inferred from expression pattern /// 0045084 // positive regulation of interleukin-12 biosynthetic process // inferred from electronic annotation /// 0045084 // positive regulation of interleukin-12 biosynthetic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051591 // response to cAMP // inferred from expression pattern /// 0070431 // nucleotide-binding oligomerization domain containing 2 signaling pathway // inferred from electronic annotation /// 0070431 // nucleotide-binding oligomerization domain containing 2 signaling pathway // not recorded /// 0070555 // response to interleukin-1 // inferred from electronic annotation /// 0070555 // response to interleukin-1 // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // inferred by curator /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction /// 0033613 // transcription activator binding // inferred from electronic annotation /// 0033613 // transcription activator binding // not recorded /// 0042301 // phosphate binding // inferred from electronic annotation /// 0042301 // phosphate binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded /// 0051059 // NF-kappaB binding // inferred from electronic annotation /// 0051059 // NF-kappaB binding // not recorded /// 0070491 // transcription repressor binding // inferred from electronic annotation /// 0070491 // transcription repressor binding // not recorded 1372854_at AI229046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229046 /DB_XREF=gi:3812933 /DB_XREF=EST225741 /CLONE=RBRDD33 /FEA=EST /CNT=12 /TID=Rn.22152.1 /TIER=Stack /STK=10 /UG=Rn.22152 /UG_TITLE=ESTs AI229046 tetratricopeptide repeat domain 17 Ttc17 311224 NM_001107752 0005488 // binding // inferred from electronic annotation 1372855_at BF287135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287135 /DB_XREF=gi:11218205 /DB_XREF=EST451726 /CLONE=RGIFZ39 /FEA=EST /CNT=12 /TID=Rn.52383.1 /TIER=Stack /STK=10 /UG=Rn.52383 /UG_TITLE=ESTs BF287135 bromodomain containing 4 Brd4 362844 NM_001100903 0006468 // protein phosphorylation // not recorded /// 0043388 // positive regulation of DNA binding // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded 1372856_at AI171219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171219 /DB_XREF=gi:3711259 /DB_XREF=EST217173 /CLONE=RMUBH71 /FEA=EST /CNT=12 /TID=Rn.29462.1 /TIER=Stack /STK=10 /UG=Rn.29462 /UG_TITLE=ESTs AI171219 similar to plasma membrane associated protein, S3-12 LOC363331 363331 XM_002727158 /// XM_002730091 1372857_at AI407930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407930 /DB_XREF=gi:4251434 /DB_XREF=EST236220 /CLONE=ROVEE46 /FEA=EST /CNT=12 /TID=Rn.17106.1 /TIER=Stack /STK=10 /UG=Rn.17106 /UG_TITLE=ESTs AI407930 protein kinase C and casein kinase substrate in neurons 2 Pacsin2 124461 NM_130740 0006897 // endocytosis // inferred from electronic annotation /// 0045806 // negative regulation of endocytosis // not recorded 0005737 // cytoplasm // not recorded /// 0005802 // trans-Golgi network // not recorded /// 0005829 // cytosol // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008092 // cytoskeletal protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1372858_at AA900367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900367 /DB_XREF=gi:4232859 /DB_XREF=UI-R-E0-cm-e-08-0-UI.s2 /CLONE=UI-R-E0-cm-e-08-0-UI /FEA=EST /CNT=12 /TID=Rn.8441.1 /TIER=Stack /STK=10 /UG=Rn.8441 /UG_TITLE=ESTs AA900367 1372859_at AI598958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598958 /DB_XREF=gi:4608006 /DB_XREF=EST250661 /CLONE=REMDZ38 /FEA=EST /CNT=12 /TID=Rn.7577.1 /TIER=Stack /STK=10 /UG=Rn.7577 /UG_TITLE=ESTs, Weakly similar to guanyltransferase (Caenorhabditis elegans) (C.elegans) AI598958 GDP-mannose pyrophosphorylase A Gmppa 501167 NM_001025056 0009058 // biosynthetic process // inferred from electronic annotation 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004475 // mannose-1-phosphate guanylyltransferase activity // not recorded /// 0004475 // mannose-1-phosphate guanylyltransferase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1372860_at BE112971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112971 /DB_XREF=gi:8505076 /DB_XREF=UI-R-BJ1-awa-h-11-0-UI.s1 /CLONE=UI-R-BJ1-awa-h-11-0-UI /FEA=EST /CNT=12 /TID=Rn.15275.1 /TIER=Stack /STK=10 /UG=Rn.15275 /UG_TITLE=ESTs, Weakly similar to T19236 hypothetical protein C13C4.4 - Caenorhabditis elegans (C.elegans) BE112971 phospholysine phosphohistidine inorganic pyrophosphate phosphatase Lhpp 361663 NM_001009706 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004427 // inorganic diphosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1372861_at BG380713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380713 /DB_XREF=gi:13305185 /DB_XREF=UI-R-CT0-bua-e-10-0-UI.s1 /CLONE=UI-R-CT0-bua-e-10-0-UI /FEA=EST /CNT=17 /TID=Rn.2928.1 /TIER=Stack /STK=10 /UG=Rn.2928 /UG_TITLE=ESTs, Moderately similar to MFGM RAT LACTADHERIN PRECURSOR (R.norvegicus) BG380713 phosphatidylinositol-4-phosphate 5-kinase, type I, gamma Pip5k1c 314641 NM_001009967 /// NM_001033970 0007409 // axonogenesis // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0046488 // phosphatidylinositol metabolic process // inferred from electronic annotation /// 0046488 // phosphatidylinositol metabolic process // not recorded /// 0046854 // phosphoinositide phosphorylation // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016307 // phosphatidylinositol phosphate kinase activity // inferred from electronic annotation /// 0016308 // 1-phosphatidylinositol-4-phosphate 5-kinase activity // inferred from electronic annotation /// 0016308 // 1-phosphatidylinositol-4-phosphate 5-kinase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation 1372862_at BM390237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390237 /DB_XREF=gi:18190290 /DB_XREF=UI-R-CN1-cjq-i-19-0-UI.s1 /CLONE=UI-R-CN1-cjq-i-19-0-UI /FEA=EST /CNT=14 /TID=Rn.37799.1 /TIER=Stack /STK=10 /UG=Rn.37799 /UG_TITLE=ESTs BM390237 RAB22A, member RAS oncogene family Rab22a 366265 NM_001108966 0006184 // GTP catabolic process // not recorded /// 0006897 // endocytosis // not recorded /// 0006897 // endocytosis // inferred from electronic annotation /// 0007032 // endosome organization // not recorded /// 0007032 // endosome organization // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded 1372863_at BF409872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409872 /DB_XREF=gi:11397847 /DB_XREF=UI-R-CA1-bjr-g-08-0-UI.s1 /CLONE=UI-R-CA1-bjr-g-08-0-UI /FEA=EST /CNT=14 /TID=Rn.27831.1 /TIER=Stack /STK=10 /UG=Rn.27831 /UG_TITLE=ESTs, Weakly similar to C01B7.6.p (Caenorhabditis elegans) (C.elegans) BF409872 MYC binding protein 2 Mycbp2 290447 NM_001106055 0008045 // motor axon guidance // not recorded /// 0021785 // branchiomotor neuron axon guidance // not recorded /// 0021952 // central nervous system projection neuron axonogenesis // not recorded /// 0030071 // regulation of mitotic metaphase/anaphase transition // inferred from electronic annotation /// 0032880 // regulation of protein localization // not recorded /// 0048667 // cell morphogenesis involved in neuron differentiation // not recorded /// 0051493 // regulation of cytoskeleton organization // not recorded 0005680 // anaphase-promoting complex // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded /// 0030424 // axon // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1372864_at AI008095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008095 /DB_XREF=gi:3221927 /DB_XREF=EST202546 /CLONE=REMAS83 /FEA=EST /CNT=14 /TID=Rn.13780.1 /TIER=Stack /STK=10 /UG=Rn.13780 /UG_TITLE=ESTs AI008095 1372865_at AI171206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171206 /DB_XREF=gi:3711246 /DB_XREF=EST217160 /CLONE=RMUBH55 /FEA=EST /CNT=14 /TID=Rn.36809.1 /TIER=Stack /STK=10 /UG=Rn.36809 /UG_TITLE=ESTs, Weakly similar to neurodegeneration-associated protein 1 (R.norvegicus) AI171206 zinc finger protein 364 Zfp364 362002 NM_001108560 0051865 // protein autoubiquitination // not recorded 0005829 // cytosol // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372866_at BM386202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386202 /DB_XREF=gi:18186255 /DB_XREF=UI-R-CN1-cjf-a-16-0-UI.s1 /CLONE=UI-R-CN1-cjf-a-16-0-UI /FEA=EST /CNT=13 /TID=Rn.21048.1 /TIER=Stack /STK=10 /UG=Rn.21048 /UG_TITLE=ESTs, Weakly similar to S67662 hypothetical protein YDL119c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BM386202 solute carrier family 25, member 38 Slc25a38 301067 NM_001030032 0006810 // transport // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // not recorded /// 0030218 // erythrocyte differentiation // inferred from sequence or structural similarity /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1372867_at AI177333 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177333 /DB_XREF=gi:3727971 /DB_XREF=EST220951 /CLONE=RPLBX66 /FEA=EST /CNT=13 /TID=Rn.20192.1 /TIER=Stack /STK=10 /UG=Rn.20192 /UG_TITLE=ESTs AI177333 RNA (guanine-7-) methyltransferase Rnmt 291534 NM_001008299 0006370 // mRNA capping // inferred from electronic annotation /// 0006370 // mRNA capping // not recorded /// 0006370 // mRNA capping // inferred from sequence or structural similarity /// 0006397 // mRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from sequence or structural similarity /// 0004482 // mRNA (guanine-N7-)-methyltransferase activity // not recorded /// 0004482 // mRNA (guanine-N7-)-methyltransferase activity // inferred from sequence or structural similarity /// 0004482 // mRNA (guanine-N7-)-methyltransferase activity // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1372868_at BF284295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284295 /DB_XREF=gi:11215365 /DB_XREF=EST448886 /CLONE=RGIEO04 /FEA=EST /CNT=13 /TID=Rn.2164.1 /TIER=Stack /STK=10 /UG=Rn.2164 /UG_TITLE=ESTs, Weakly similar to TO1B_MOUSE Torsin B precursor (M.musculus) BF284295 torsin family 3, member A Tor3a 304884 NM_001009683 0051085 // chaperone mediated protein folding requiring cofactor // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003855 // 3-dehydroquinate dehydratase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1372869_at BE109202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109202 /DB_XREF=gi:8501307 /DB_XREF=UI-R-BS1-azd-b-02-0-UI.s1 /CLONE=UI-R-BS1-azd-b-02-0-UI /FEA=EST /CNT=13 /TID=Rn.8867.2 /TIER=Stack /STK=10 /UG=Rn.8867 /LL=114300 /UG_GENE=Crfg /UG_TITLE=G protein-binding protein CRFG BE109202 similar to GTP-binding protein NGB RGD1563564 498786 XM_002728505 0005525 // GTP binding // inferred from electronic annotation 1372870_at BM391302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391302 /DB_XREF=gi:18191355 /DB_XREF=UI-R-DY0-ckq-h-21-0-UI.s1 /CLONE=UI-R-DY0-ckq-h-21-0-UI /FEA=EST /CNT=13 /TID=Rn.16696.1 /TIER=Stack /STK=10 /UG=Rn.16696 /UG_TITLE=ESTs, Highly similar to ER23_HUMAN ER LUMEN PROTEIN RETAINING RECEPTOR 3 (H.sapiens) BM391302 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 Kdelr3 315131 NM_001127546 0006621 // protein retention in ER lumen // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0046923 // ER retention sequence binding // inferred from electronic annotation 1372871_at AA891821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891821 /DB_XREF=gi:3018700 /DB_XREF=EST195624 /CLONE=RKIAH25 /FEA=EST /CNT=13 /TID=Rn.8111.1 /TIER=Stack /STK=10 /UG=Rn.8111 /UG_TITLE=ESTs AA891821 hypothetical protein MGC:72616 RGD735175 316530 NM_199112 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1372872_at BI291271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291271 /DB_XREF=gi:14950656 /DB_XREF=UI-R-CV2-cgn-e-10-0-UI.s1 /CLONE=UI-R-CV2-cgn-e-10-0-UI /FEA=EST /CNT=12 /TID=Rn.16021.1 /TIER=Stack /STK=10 /UG=Rn.16021 /UG_TITLE=ESTs BI291271 1372873_at BM385705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385705 /DB_XREF=gi:18185758 /DB_XREF=UI-R-CN1-clx-o-23-0-UI.s1 /CLONE=UI-R-CN1-clx-o-23-0-UI /FEA=EST /CNT=12 /TID=Rn.13347.1 /TIER=Stack /STK=10 /UG=Rn.13347 /UG_TITLE=ESTs BM385705 1372874_at BI299261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299261 /DB_XREF=gi:14975541 /DB_XREF=UI-R-CV2-cht-b-03-0-UI.s1 /CLONE=UI-R-CV2-cht-b-03-0-UI /FEA=EST /CNT=12 /TID=Rn.20383.1 /TIER=Stack /STK=10 /UG=Rn.20383 /UG_TITLE=ESTs BI299261 1372875_at AI408520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408520 /DB_XREF=gi:4252024 /DB_XREF=EST236810 /CLONE=ROVEQ22 /FEA=EST /CNT=12 /TID=Rn.8905.1 /TIER=Stack /STK=10 /UG=Rn.8905 /UG_TITLE=ESTs AI408520 1372876_at AA799700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799700 /DB_XREF=gi:4131429 /DB_XREF=EST189197 /CLONE=RHEAE21 /FEA=EST /CNT=12 /TID=Rn.11447.1 /TIER=Stack /STK=10 /UG=Rn.11447 /UG_TITLE=ESTs, Highly similar to SPS2 MOUSE SELENIDE,WATER DIKINASE 2 (M.musculus) AA799700 selenophosphate synthetase 2 Sephs2 308993 NM_001079889 0003824 // catalytic activity // inferred from electronic annotation /// 0004756 // selenide, water dikinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1372877_at BI304070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI304070 /DB_XREF=gi:14980350 /DB_XREF=UI-R-DR0-cjc-o-16-0-UI.s1 /CLONE=UI-R-DR0-cjc-o-16-0-UI /FEA=EST /CNT=12 /TID=Rn.8137.1 /TIER=Stack /STK=10 /UG=Rn.8137 /UG_TITLE=ESTs, Weakly similar to PLO1 RAT PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE 1 PRECURSOR (R.norvegicus) BI304070 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 Plod3 288583 NM_178101 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030867 // rough endoplasmic reticulum membrane // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008475 // procollagen-lysine 5-dioxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372878_at BG668247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668247 /DB_XREF=gi:13890169 /DB_XREF=DRACNH12 /CLONE=DRACNH12 /FEA=EST /CNT=12 /TID=Rn.11634.1 /TIER=Stack /STK=10 /UG=Rn.11634 /UG_TITLE=ESTs BG668247 zinc finger RNA binding protein Zfr 365703 XM_001056210 /// XM_345169 0007275 // multicellular organismal development // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1372879_at BI283873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283873 /DB_XREF=gi:14936045 /DB_XREF=UI-R-CX0s-ccx-f-11-0-UI.s1 /CLONE=UI-R-CX0s-ccx-f-11-0-UI /FEA=EST /CNT=12 /TID=Rn.3855.1 /TIER=Stack /STK=10 /UG=Rn.3855 /UG_TITLE=ESTs BI283873 AKT1 substrate 1 (proline-rich) Akt1s1 292887 NM_001106259 0006469 // negative regulation of protein kinase activity // not recorded /// 0032007 // negative regulation of TOR signaling cascade // not recorded /// 0043526 // neuroprotection // not recorded /// 0045792 // negative regulation of cell size // not recorded /// 0045884 // regulation of survival gene product expression // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0031931 // TORC1 complex // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0044445 // cytosolic part // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1372880_at BF285118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285118 /DB_XREF=gi:11216188 /DB_XREF=EST449709 /CLONE=RGIFA68 /FEA=EST /CNT=12 /TID=Rn.15582.1 /TIER=Stack /STK=10 /UG=Rn.15582 /UG_TITLE=ESTs, Highly similar to S59069 Z13 protein - mouse (M.musculus) BF285118 zinc finger and BTB domain containing 17 Zbtb17 313666 NM_001012105 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // not recorded /// 0007398 // ectoderm development // inferred from electronic annotation /// 0007398 // ectoderm development // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372881_at AI229064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229064 /DB_XREF=gi:4135405 /DB_XREF=EST225759 /CLONE=RBRDD54 /FEA=EST /CNT=12 /TID=Rn.24396.1 /TIER=Stack /STK=10 /UG=Rn.24396 /UG_TITLE=ESTs AI229064 1372882_at BG379301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379301 /DB_XREF=gi:13303773 /DB_XREF=UI-R-CS0-btu-b-02-0-UI.s1 /CLONE=UI-R-CS0-btu-b-02-0-UI /FEA=EST /CNT=12 /TID=Rn.22412.1 /TIER=Stack /STK=10 /UG=Rn.22412 /UG_TITLE=ESTs, Weakly similar to S51301 hypothetical protein YNL310c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BG379301 DNL-type zinc finger Dnlz 296587 NM_001130990 /// NR_024073 0005739 // mitochondrion // not recorded 1372883_at BE109061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109061 /DB_XREF=gi:8501166 /DB_XREF=UI-R-BS1-azc-e-07-0-UI.s1 /CLONE=UI-R-BS1-azc-e-07-0-UI /FEA=EST /CNT=12 /TID=Rn.33056.1 /TIER=Stack /STK=10 /UG=Rn.33056 /UG_TITLE=ESTs, Moderately similar to CENB MOUSE MAJOR CENTROMERE AUTOANTIGEN B (M.musculus) BE109061 centromere protein B Cenpb 362217 XM_001081194 /// XM_342521 0045449 // regulation of transcription // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000775 // chromosome, centromeric region // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation 1372884_at BG381486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381486 /DB_XREF=gi:13305958 /DB_XREF=UI-R-CT0-buj-h-06-0-UI.s1 /CLONE=UI-R-CT0-buj-h-06-0-UI /FEA=EST /CNT=12 /TID=Rn.24338.1 /TIER=Stack /STK=10 /UG=Rn.24338 /UG_TITLE=ESTs BG381486 like-glycosyltransferase Large 361368 NM_001108439 0046716 // muscle cell homeostasis // not recorded 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1372885_at AI230467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230467 /DB_XREF=gi:3814354 /DB_XREF=EST227162 /CLONE=REMCW83 /FEA=EST /CNT=12 /TID=Rn.1356.1 /TIER=Stack /STK=10 /UG=Rn.1356 /UG_TITLE=ESTs AI230467 CCAAT/enhancer binding protein (C/EBP), gamma Cebpg 25301 NM_012831 0001889 // liver development // inferred from expression pattern /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from expression pattern /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006955 // immune response // not recorded /// 0006955 // immune response // inferred from sequence or structural similarity /// 0006955 // immune response // inferred from electronic annotation /// 0016071 // mRNA metabolic process // inferred from electronic annotation /// 0016071 // mRNA metabolic process // not recorded /// 0030183 // B cell differentiation // not recorded /// 0030183 // B cell differentiation // inferred from sequence or structural similarity /// 0030183 // B cell differentiation // inferred from electronic annotation /// 0042267 // natural killer cell mediated cytotoxicity // not recorded /// 0042267 // natural killer cell mediated cytotoxicity // inferred from sequence or structural similarity /// 0042267 // natural killer cell mediated cytotoxicity // inferred from electronic annotation /// 0043353 // enucleate erythrocyte differentiation // not recorded /// 0043353 // enucleate erythrocyte differentiation // inferred from sequence or structural similarity /// 0043353 // enucleate erythrocyte differentiation // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0043433 // negative regulation of transcription factor activity // inferred from sequence or structural similarity /// 0043433 // negative regulation of transcription factor activity // inferred from electronic annotation /// 0045078 // positive regulation of interferon-gamma biosynthetic process // not recorded /// 0045078 // positive regulation of interferon-gamma biosynthetic process // inferred from sequence or structural similarity /// 0045078 // positive regulation of interferon-gamma biosynthetic process // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045739 // positive regulation of DNA repair // not recorded /// 0045739 // positive regulation of DNA repair // inferred from sequence or structural similarity /// 0045739 // positive regulation of DNA repair // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from sequence or structural similarity /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016563 // transcription activator activity // traceable author statement /// 0016564 // transcription repressor activity // traceable author statement /// 0042803 // protein homodimerization activity // traceable author statement /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // traceable author statement /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1372886_at AI556917 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556917 /DB_XREF=gi:4489280 /DB_XREF=UI-R-C2p-rp-e-03-0-UI.s1 /CLONE=UI-R-C2p-rp-e-03-0-UI /FEA=EST /CNT=12 /TID=Rn.39396.1 /TIER=Stack /STK=10 /UG=Rn.39396 /UG_TITLE=ESTs, Moderately similar to TAC3_MOUSE TRANSFORMING ACIDIC COILED-COIL CONTAINING PROTEIN 3 (ARNT INTERACTING PROTEIN) (M.musculus) AI556917 transforming, acidic coiled-coil containing protein 3 Tacc3 360962 NM_001004424 0000226 // microtubule cytoskeleton organization // not recorded /// 0006950 // response to stress // not recorded /// 0008283 // cell proliferation // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0022008 // neurogenesis // not recorded /// 0022027 // interkinetic nuclear migration // not recorded /// 0030097 // hemopoiesis // not recorded /// 0030953 // spindle astral microtubule organization // not recorded /// 0032886 // regulation of microtubule-based process // not recorded /// 0042994 // cytoplasmic sequestering of transcription factor // not recorded /// 0051726 // regulation of cell cycle // not recorded 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // not recorded 0019904 // protein domain specific binding // not recorded 1372887_at BM391741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391741 /DB_XREF=gi:18191794 /DB_XREF=UI-R-DZ0-cks-g-02-0-UI.s1 /CLONE=UI-R-DZ0-cks-g-02-0-UI /FEA=EST /CNT=11 /TID=Rn.23193.1 /TIER=Stack /STK=10 /UG=Rn.23193 /UG_TITLE=ESTs BM391741 scavenger receptor class F, member 2 Scarf2 287949 NM_001105864 0007157 // heterophilic cell-cell adhesion // not recorded /// 0007165 // signal transduction // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005044 // scavenger receptor activity // not recorded /// 0005515 // protein binding // not recorded 1372888_at BI294856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294856 /DB_XREF=gi:14957718 /DB_XREF=UI-R-DK0-cec-h-11-0-UI.s1 /CLONE=UI-R-DK0-cec-h-11-0-UI /FEA=EST /CNT=11 /TID=Rn.15640.1 /TIER=Stack /STK=10 /UG=Rn.15640 /UG_TITLE=ESTs BI294856 ubiquitination factor E4A (UFD2 homolog, yeast) Ube4a 315608 NM_207610 0000209 // protein polyubiquitination // inferred from electronic annotation /// 0000209 // protein polyubiquitination // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0034450 // ubiquitin-ubiquitin ligase activity // inferred from electronic annotation /// 0034450 // ubiquitin-ubiquitin ligase activity // not recorded 1372889_at AI407489 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407489 /DB_XREF=gi:4250993 /DB_XREF=EST235778 /CLONE=ROVDT86 /FEA=EST /CNT=11 /TID=Rn.4119.1 /TIER=Stack /STK=10 /UG=Rn.4119 /UG_TITLE=ESTs AI407489 1372890_at BM389696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389696 /DB_XREF=gi:18189749 /DB_XREF=UI-R-CN1-cjp-c-18-0-UI.s1 /CLONE=UI-R-CN1-cjp-c-18-0-UI /FEA=EST /CNT=11 /TID=Rn.11930.1 /TIER=Stack /STK=10 /UG=Rn.11930 /UG_TITLE=ESTs BM389696 1372891_at BF408856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408856 /DB_XREF=gi:11396831 /DB_XREF=UI-R-BS2-bet-b-12-0-UI.s1 /CLONE=UI-R-BS2-bet-b-12-0-UI /FEA=EST /CNT=11 /TID=Rn.34998.1 /TIER=Stack /STK=10 /UG=Rn.34998 /UG_TITLE=ESTs, Weakly similar to S78727 protein YLL018c-a - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BF408856 COX19 cytochrome c oxidase assembly homolog (S. cerevisiae) Cox19 304330 NM_001107126 1372892_at BE109668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109668 /DB_XREF=gi:8501773 /DB_XREF=UI-R-BJ1-avq-g-07-0-UI.s1 /CLONE=UI-R-BJ1-avq-g-07-0-UI /FEA=EST /CNT=11 /TID=Rn.23338.1 /TIER=Stack /STK=10 /UG=Rn.23338 /UG_TITLE=ESTs, Weakly similar to Z213_HUMAN ZINC FINGER PROTEIN 213 (PUTATIVE TRANSCRIPTION FACTOR CR53) (H.sapiens) BE109668 Zinc finger protein 213 Znf213 287094 NM_001105764 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372893_at BI284198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284198 /DB_XREF=gi:14936662 /DB_XREF=UI-R-CX0s-ccn-d-05-0-UI.s1 /CLONE=UI-R-CX0s-ccn-d-05-0-UI /FEA=EST /CNT=11 /TID=Rn.17324.1 /TIER=Stack /STK=10 /UG=Rn.17324 /UG_TITLE=ESTs, Weakly similar to Y25C1A.7b.p (Caenorhabditis elegans) (C.elegans) BI284198 Yip1 domain family, member 1 Yipf1 298312 NM_199383 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from electronic annotation /// 0030133 // transport vesicle // not recorded 1372894_at BI284179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284179 /DB_XREF=gi:14936624 /DB_XREF=UI-R-CX0s-ccn-b-06-0-UI.s1 /CLONE=UI-R-CX0s-ccn-b-06-0-UI /FEA=EST /CNT=11 /TID=Rn.7749.1 /TIER=Stack /STK=10 /UG=Rn.7749 /UG_TITLE=ESTs, Highly similar to G01430 PL6 protein (H.sapiens) BI284179 transmembrane protein 115 Tmem115 363136 NM_001108779 0001302 // replicative cell aging // inferred from expression pattern 0005634 // nucleus // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 1372895_at AI169367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169367 /DB_XREF=gi:3705675 /DB_XREF=EST215211 /CLONE=RKIBR37 /FEA=EST /CNT=11 /TID=Rn.13520.1 /TIER=Stack /STK=10 /UG=Rn.13520 /UG_TITLE=ESTs AI169367 similar to RIKEN cDNA 5730469M10 RGD1309676 361118 NM_001014140 0005576 // extracellular region // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0016209 // antioxidant activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1372896_at BM390440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390440 /DB_XREF=gi:18190493 /DB_XREF=UI-R-CN1-cjq-b-16-0-UI.s1 /CLONE=UI-R-CN1-cjq-b-16-0-UI /FEA=EST /CNT=11 /TID=Rn.16961.1 /TIER=Stack /STK=10 /UG=Rn.16961 /UG_TITLE=ESTs BM390440 1372897_at BI279641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279641 /DB_XREF=gi:14927650 /DB_XREF=UI-R-DE0-cae-h-11-0-UI.s1 /CLONE=UI-R-DE0-cae-h-11-0-UI /FEA=EST /CNT=11 /TID=Rn.12945.1 /TIER=Stack /STK=10 /UG=Rn.12945 /UG_TITLE=ESTs BI279641 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 Plod2 300901 NM_001142915 /// NM_175869 0001666 // response to hypoxia // inferred from expression pattern /// 0001666 // response to hypoxia // not recorded /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030867 // rough endoplasmic reticulum membrane // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008475 // procollagen-lysine 5-dioxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372898_at BI291248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291248 /DB_XREF=gi:14950611 /DB_XREF=UI-R-CV2-cgn-c-07-0-UI.s1 /CLONE=UI-R-CV2-cgn-c-07-0-UI /FEA=EST /CNT=11 /TID=Rn.41119.1 /TIER=Stack /STK=10 /UG=Rn.41119 /UG_TITLE=ESTs, Weakly similar to T13481 hypothetical protein EG:34F3.4 - fruit fly (D.melanogaster) BI291248 HEAT repeat containing 6 Heatr6 497972 NM_001079897 0005488 // binding // inferred from electronic annotation 1372899_at AI104683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104683 /DB_XREF=gi:3708989 /DB_XREF=EST213972 /CLONE=RHECH61 /FEA=EST /CNT=11 /TID=Rn.6853.1 /TIER=Stack /STK=10 /UG=Rn.6853 /UG_TITLE=ESTs AI104683 1372900_at BI274156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274156 /DB_XREF=gi:14884813 /DB_XREF=UI-R-CW0-bwf-f-07-0-UI.s1 /CLONE=UI-R-CW0-bwf-f-07-0-UI /FEA=EST /CNT=11 /TID=Rn.6001.1 /TIER=Stack /STK=10 /UG=Rn.6001 /UG_TITLE=ESTs, Weakly similar to S46687 hypothetical protein YHR188c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BI274156 phosphatidylinositol glycan anchor biosynthesis, class T Pigt 296360 NM_001106540 0016255 // attachment of GPI anchor to protein // not recorded /// 0030182 // neuron differentiation // not recorded /// 0051402 // neuron apoptosis // not recorded 0005737 // cytoplasm // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0042765 // GPI-anchor transamidase complex // inferred from electronic annotation /// 0042765 // GPI-anchor transamidase complex // not recorded 0003923 // GPI-anchor transamidase activity // not recorded /// 0005515 // protein binding // not recorded 1372901_at BM386850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386850 /DB_XREF=gi:18186903 /DB_XREF=UI-R-CN1-cjh-m-24-0-UI.s1 /CLONE=UI-R-CN1-cjh-m-24-0-UI /FEA=EST /CNT=11 /TID=Rn.11681.1 /TIER=Stack /STK=10 /UG=Rn.11681 /UG_TITLE=ESTs BM386850 NHL repeat containing 3 Nhlrc3 310416 XM_001054658 /// XM_227139 1372902_at BI289064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289064 /DB_XREF=gi:14946271 /DB_XREF=UI-R-DK0-cfe-b-12-0-UI.s1 /CLONE=UI-R-DK0-cfe-b-12-0-UI /FEA=EST /CNT=11 /TID=Rn.30142.1 /TIER=Stack /STK=10 /UG=Rn.30142 /UG_TITLE=ESTs BI289064 asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase) Alg12 315212 NM_001108104 0006506 // GPI anchor biosynthetic process // inferred from electronic annotation 0031227 // intrinsic to endoplasmic reticulum membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1372903_at AI410054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410054 /DB_XREF=gi:4253558 /DB_XREF=EST238347 /CLONE=RPLDH62 /FEA=EST /CNT=11 /TID=Rn.12616.1 /TIER=Stack /STK=10 /UG=Rn.12616 /UG_TITLE=ESTs AI410054 kinesin family member 18B /// kinesin-like protein KIF18B-like Kif18b /// LOC100363850 100363850 /// 303575 NM_001039019 /// XM_002724569 0007018 // microtubule-based movement // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1372904_at BI285628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285628 /DB_XREF=gi:14939470 /DB_XREF=UI-R-CW0-bvv-h-09-0-UI.s2 /CLONE=UI-R-CW0-bvv-h-09-0-UI /FEA=EST /CNT=11 /TID=Rn.9147.1 /TIER=Stack /STK=10 /UG=Rn.9147 /UG_TITLE=ESTs BI285628 MOB1, Mps One Binder kinase activator-like 2A (yeast) Mobkl2a 362833 NM_001108734 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1372905_at AW433888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433888 /DB_XREF=gi:6965195 /DB_XREF=UI-R-BJ0p-afm-g-07-0-UI.s1 /CLONE=UI-R-BJ0p-afm-g-07-0-UI /FEA=EST /CNT=11 /TID=Rn.13776.1 /TIER=Stack /STK=10 /UG=Rn.13776 /UG_TITLE=ESTs AW433888 vinculin Vcl 305679 NM_001107248 0002009 // morphogenesis of an epithelium // not recorded /// 0006936 // muscle contraction // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0030032 // lamellipodium assembly // inferred from electronic annotation /// 0030032 // lamellipodium assembly // not recorded /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0030334 // regulation of cell migration // not recorded /// 0034333 // adherens junction assembly // not recorded /// 0034394 // protein localization at cell surface // not recorded /// 0043297 // apical junction assembly // inferred from electronic annotation /// 0043297 // apical junction assembly // not recorded /// 0090136 // epithelial cell-cell adhesion // not recorded 0001725 // stress fiber // inferred from direct assay /// 0005576 // extracellular region // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0005913 // cell-cell adherens junction // not recorded /// 0005916 // fascia adherens // inferred from electronic annotation /// 0005916 // fascia adherens // not recorded /// 0005925 // focal adhesion // inferred from direct assay /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0043034 // costamere // inferred from electronic annotation /// 0043034 // costamere // not recorded /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from electronic annotation 0002166 // beta-dystroglycan binding // inferred from electronic annotation /// 0002166 // beta-dystroglycan binding // not recorded /// 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from physical interaction /// 0045294 // alpha-catenin binding // inferred from electronic annotation /// 0045294 // alpha-catenin binding // not recorded 1372906_at AI008796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008796 /DB_XREF=gi:4132948 /DB_XREF=EST203247 /CLONE=REMBD35 /FEA=EST /CNT=11 /TID=Rn.235.1 /TIER=Stack /STK=10 /UG=Rn.235 /UG_TITLE=ESTs AI008796 similar to hypothetical protein MGC40841; similar to hypothetical protein MGC4707 RGD1309540 295930 NM_001013918 1372907_at BI285242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285242 /DB_XREF=gi:14938681 /DB_XREF=UI-R-DB0-byx-g-08-0-UI.s1 /CLONE=UI-R-DB0-byx-g-08-0-UI /FEA=EST /CNT=11 /TID=Rn.11803.1 /TIER=Stack /STK=10 /UG=Rn.11803 /UG_TITLE=ESTs BI285242 ATPase, H+ transporting V0 subunit e2 Atp6v0e2 436582 NM_001002253 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0016049 // cell growth // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0033179 // proton-transporting V-type ATPase, V0 domain // inferred from electronic annotation 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1372908_at BM384449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384449 /DB_XREF=gi:18184502 /DB_XREF=UI-R-CN1-cjn-m-18-0-UI.s1 /CLONE=UI-R-CN1-cjn-m-18-0-UI /FEA=EST /CNT=11 /TID=Rn.20038.1 /TIER=Stack /STK=10 /UG=Rn.20038 /UG_TITLE=ESTs BM384449 splA/ryanodine receptor domain and SOCS box containing 3 Spsb3 302981 NM_001106988 0023034 // intracellular signaling pathway // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1372909_at BE112384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112384 /DB_XREF=gi:8504489 /DB_XREF=UI-R-BJ1-avm-a-08-0-UI.s1 /CLONE=UI-R-BJ1-avm-a-08-0-UI /FEA=EST /CNT=11 /TID=Rn.8510.1 /TIER=Stack /STK=10 /UG=Rn.8510 /UG_TITLE=ESTs BE112384 centrosomal protein 120kDa Cep120 307302 NM_001191697 /// XM_001055603 /// XM_225760 0000226 // microtubule cytoskeleton organization // not recorded /// 0008283 // cell proliferation // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0022008 // neurogenesis // not recorded /// 0022027 // interkinetic nuclear migration // not recorded /// 0030953 // spindle astral microtubule organization // not recorded /// 0032880 // regulation of protein localization // not recorded /// 0032886 // regulation of microtubule-based process // not recorded 0005813 // centrosome // not recorded 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded 1372910_at AI408770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408770 /DB_XREF=gi:4252274 /DB_XREF=EST237061 /CLONE=ROVEG94 /FEA=EST /CNT=11 /TID=Rn.12954.1 /TIER=Stack /STK=10 /UG=Rn.12954 /UG_TITLE=ESTs AI408770 1372911_at BI281950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281950 /DB_XREF=gi:14932216 /DB_XREF=UI-R-CU0s-cbu-e-11-0-UI.s1 /CLONE=UI-R-CU0s-cbu-e-11-0-UI /FEA=EST /CNT=11 /TID=Rn.27185.1 /TIER=Stack /STK=10 /UG=Rn.27185 /UG_TITLE=ESTs BI281950 1372912_at AA851280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851280 /DB_XREF=gi:2938820 /DB_XREF=EST194048 /CLONE=RPLAE74 /FEA=EST /CNT=11 /TID=Rn.17231.1 /TIER=Stack /STK=10 /UG=Rn.17231 /UG_TITLE=ESTs AA851280 mitogen-activated protein kinase kinase kinase 7 interacting protein 1 Map3k7ip1 315139 NM_001109976 0043234 // protein complex // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1372913_at AA849734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849734 /DB_XREF=gi:2937274 /DB_XREF=EST192501 /CLONE=RMUAI27 /FEA=EST /CNT=11 /TID=Rn.6506.1 /TIER=Stack /STK=10 /UG=Rn.6506 /UG_TITLE=ESTs AA849734 NEFA-interacting nuclear protein NIP30 Nip30 307652 NM_001014014 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 1372914_at AI705656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI705656 /DB_XREF=gi:4993556 /DB_XREF=UI-R-AD1-zp-d-06-0-UI.s1 /CLONE=UI-R-AD1-zp-d-06-0-UI /FEA=EST /CNT=11 /TID=Rn.19329.1 /TIER=Stack /STK=10 /UG=Rn.19329 /UG_TITLE=ESTs, Weakly similar to LYMPHOTOXIN-BETA RECEPTOR PRECURSOR (M.musculus) AI705656 lymphotoxin beta receptor (TNFR superfamily, member 3) Ltbr 297604 NM_001008315 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372915_at BG375484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375484 /DB_XREF=gi:13299956 /DB_XREF=UI-R-CV1-btb-h-04-0-UI.s1 /CLONE=UI-R-CV1-btb-h-04-0-UI /FEA=EST /CNT=11 /TID=Rn.20332.1 /TIER=Stack /STK=10 /UG=Rn.20332 /UG_TITLE=ESTs BG375484 1372916_at BI295139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295139 /DB_XREF=gi:14958285 /DB_XREF=UI-R-DK0-ceg-c-06-0-UI.s1 /CLONE=UI-R-DK0-ceg-c-06-0-UI /FEA=EST /CNT=11 /TID=Rn.6619.1 /TIER=Stack /STK=10 /UG=Rn.6619 /UG_TITLE=ESTs BI295139 1372917_at AI111992 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111992 /DB_XREF=gi:3511941 /DB_XREF=UI-R-Y0-mo-h-11-0-UI.s1 /CLONE=UI-R-Y0-mo-h-11-0-UI /FEA=EST /CNT=11 /TID=Rn.22076.1 /TIER=Stack /STK=10 /UG=Rn.22076 /UG_TITLE=ESTs AI111992 peptidyl-tRNA hydrolase 2 Ptrh2 287593 NM_001013860 0006412 // translation // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0004045 // aminoacyl-tRNA hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1372918_at BM385785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385785 /DB_XREF=gi:18185838 /DB_XREF=UI-R-CN1-clx-p-19-0-UI.s1 /CLONE=UI-R-CN1-clx-p-19-0-UI /FEA=EST /CNT=11 /TID=Rn.18836.1 /TIER=Stack /STK=10 /UG=Rn.18836 /UG_TITLE=ESTs BM385785 hypothetical LOC100174909 LOC100174909 100174909 NM_001131000 1372919_at AA851904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851904 /DB_XREF=gi:2939444 /DB_XREF=EST194673 /CLONE=RSPAO17 /FEA=EST /CNT=11 /TID=Rn.6835.1 /TIER=Stack /STK=10 /UG=Rn.6835 /UG_TITLE=ESTs AA851904 1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta) Agpat6 290843 NM_001047849 0002071 // glandular epithelial cell maturation // not recorded /// 0002071 // glandular epithelial cell maturation // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // not recorded /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006637 // acyl-CoA metabolic process // not recorded /// 0006637 // acyl-CoA metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // not recorded /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006656 // phosphatidylcholine biosynthetic process // not recorded /// 0006656 // phosphatidylcholine biosynthetic process // inferred from electronic annotation /// 0007595 // lactation // not recorded /// 0007595 // lactation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0019432 // triglyceride biosynthetic process // not recorded /// 0019432 // triglyceride biosynthetic process // inferred from electronic annotation /// 0030879 // mammary gland development // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0046339 // diacylglycerol metabolic process // not recorded /// 0046339 // diacylglycerol metabolic process // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // not recorded /// 0004366 // glycerol-3-phosphate O-acyltransferase activity // not recorded /// 0004366 // glycerol-3-phosphate O-acyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1372920_at AI411345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411345 /DB_XREF=gi:4254849 /DB_XREF=EST239639 /CLONE=RKIEU86 /FEA=EST /CNT=11 /TID=Rn.41672.1 /TIER=Stack /STK=10 /UG=Rn.41672 /UG_TITLE=ESTs, Highly similar to PROD MOUSE PROLINE OXIDASE, MITOCHONDRIAL PRECURSOR (M.musculus) AI411345 proline dehydrogenase Prodh 680409 NM_001135778 0006537 // glutamate biosynthetic process // inferred from electronic annotation /// 0006562 // proline catabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation 0004657 // proline dehydrogenase activity // inferred from mutant phenotype /// 0004657 // proline dehydrogenase activity // not recorded /// 0004657 // proline dehydrogenase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from mutant phenotype 1372921_at AI073219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073219 /DB_XREF=gi:3399413 /DB_XREF=UI-R-Y0-lx-d-07-0-UI.s1 /CLONE=UI-R-Y0-lx-d-07-0-UI /FEA=EST /CNT=11 /TID=Rn.21860.1 /TIER=Stack /STK=10 /UG=Rn.21860 /UG_TITLE=ESTs AI073219 1372922_at BI292045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292045 /DB_XREF=gi:14952164 /DB_XREF=UI-R-DN0-ciu-g-22-0-UI.s1 /CLONE=UI-R-DN0-ciu-g-22-0-UI /FEA=EST /CNT=11 /TID=Rn.15352.1 /TIER=Stack /STK=10 /UG=Rn.15352 /UG_TITLE=ESTs BI292045 hypothetical protein LOC691259 LOC691259 691259 NM_001109632 1372923_at BG377340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377340 /DB_XREF=gi:13301812 /DB_XREF=UI-R-CU0-bvc-c-12-0-UI.s1 /CLONE=UI-R-CU0-bvc-c-12-0-UI /FEA=EST /CNT=11 /TID=Rn.24248.1 /TIER=Stack /STK=10 /UG=Rn.24248 /UG_TITLE=ESTs, Highly similar to JE0326 peroxin Pex11p isoform, Pex11pbeta (H.sapiens) BG377340 Peroxisomal biogenesis factor 11 beta Pex11b 310682 NM_001025684 0016559 // peroxisome fission // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005777 // peroxisome // inferred from electronic annotation /// 0005777 // peroxisome // not recorded /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372924_at AA891479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891479 /DB_XREF=gi:3018358 /DB_XREF=EST195282 /CLONE=RHEAU93 /FEA=EST /CNT=11 /TID=Rn.1743.1 /TIER=Stack /STK=10 /UG=Rn.1743 /UG_TITLE=ESTs AA891479 similar to Mediator of RNA polymerase II transcription, subunit 9 homolog RGD1563669 497914 NM_001127302 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0016592 // mediator complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation 1372925_at AI233135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233135 /DB_XREF=gi:3817015 /DB_XREF=EST229823 /CLONE=RKICL28 /FEA=EST /CNT=11 /TID=Rn.24698.1 /TIER=Stack /STK=10 /UG=Rn.24698 /UG_TITLE=ESTs, Weakly similar to A Chain A, Human Sirt2 Histone Deacetylase (H.sapiens) AI233135 sirtuin (silent mating type information regulation 2 homolog) 3 (S. cerevisiae) Sirt3 293615 NM_001106313 0006342 // chromatin silencing // inferred from electronic annotation /// 0006476 // protein deacetylation // inferred from electronic annotation /// 0006476 // protein deacetylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016811 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation /// 0070403 // NAD binding // inferred from electronic annotation 1372926_at AI009159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009159 /DB_XREF=gi:3222991 /DB_XREF=EST203610 /CLONE=REMBJ69 /FEA=EST /CNT=11 /TID=Rn.3467.2 /TIER=Stack /STK=10 /UG=Rn.3467 /LL=25358 /UG_GENE=Timp3 /UG_TITLE=Tissue inhibitor of metalloproteinase 3 AI009159 TIMP metallopeptidase inhibitor 3 Timp3 25358 NM_012886 0006917 // induction of apoptosis // traceable author statement /// 0007417 // central nervous system development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0042246 // tissue regeneration // inferred from expression pattern /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045861 // negative regulation of proteolysis // inferred from mutant phenotype /// 0051045 // negative regulation of membrane protein ectodomain proteolysis // inferred from electronic annotation /// 0051045 // negative regulation of membrane protein ectodomain proteolysis // not recorded /// 0051593 // response to folic acid // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0031012 // extracellular matrix // not recorded 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008191 // metalloendopeptidase inhibitor activity // traceable author statement /// 0008191 // metalloendopeptidase inhibitor activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372927_at AA891839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891839 /DB_XREF=gi:3018718 /DB_XREF=EST195642 /CLONE=RKIAH45 /FEA=EST /CNT=11 /TID=Rn.1787.1 /TIER=Stack /STK=10 /UG=Rn.1787 /UG_TITLE=ESTs AA891839 mitochondrial ribosomal protein L50 Mrpl50 362517 NM_001108665 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 1372928_at AI169749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169749 /DB_XREF=gi:3709789 /DB_XREF=EST215648 /CLONE=RLIAS78 /FEA=EST /CNT=11 /TID=Rn.17878.1 /TIER=Stack /STK=10 /UG=Rn.17878 /UG_TITLE=ESTs AI169749 1372929_at AI010839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010839 /DB_XREF=gi:4133312 /DB_XREF=EST205290 /CLONE=RMUAT18 /FEA=EST /CNT=11 /TID=Rn.30616.1 /TIER=Stack /STK=10 /UG=Rn.30616 /UG_TITLE=ESTs AI010839 potassium large conductance calcium-activated channel, subfamily M, alpha member 1 Kcnma1 83731 NM_031828 0001666 // response to hypoxia // inferred from direct assay /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // not recorded /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006970 // response to osmotic stress // not recorded /// 0006970 // response to osmotic stress // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007623 // circadian rhythm // not recorded /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0007628 // adult walking behavior // not recorded /// 0007628 // adult walking behavior // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009268 // response to pH // inferred from direct assay /// 0019228 // regulation of action potential in neuron // not recorded /// 0019228 // regulation of action potential in neuron // inferred from electronic annotation /// 0030007 // cellular potassium ion homeostasis // not recorded /// 0030007 // cellular potassium ion homeostasis // inferred from electronic annotation /// 0031960 // response to corticosteroid stimulus // inferred from direct assay /// 0032344 // regulation of aldosterone metabolic process // not recorded /// 0032344 // regulation of aldosterone metabolic process // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0034465 // response to carbon monoxide // not recorded /// 0034465 // response to carbon monoxide // inferred from electronic annotation /// 0034765 // regulation of ion transmembrane transport // not recorded /// 0042311 // vasodilation // not recorded /// 0042311 // vasodilation // inferred from electronic annotation /// 0042312 // regulation of vasodilation // inferred from direct assay /// 0042391 // regulation of membrane potential // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042491 // auditory receptor cell differentiation // not recorded /// 0042491 // auditory receptor cell differentiation // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0045475 // locomotor rhythm // not recorded /// 0045475 // locomotor rhythm // inferred from electronic annotation /// 0045794 // negative regulation of cell volume // not recorded /// 0045794 // negative regulation of cell volume // inferred from electronic annotation /// 0046541 // saliva secretion // not recorded /// 0046541 // saliva secretion // inferred from electronic annotation /// 0048469 // cell maturation // not recorded /// 0048469 // cell maturation // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from direct assay /// 0051592 // response to calcium ion // not recorded /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060073 // micturition // not recorded /// 0060073 // micturition // inferred from electronic annotation /// 0060082 // eye blink reflex // not recorded /// 0060082 // eye blink reflex // inferred from electronic annotation /// 0060083 // smooth muscle contraction involved in micturition // not recorded /// 0060083 // smooth muscle contraction involved in micturition // inferred from electronic annotation /// 0060087 // relaxation of vascular smooth muscle // not recorded /// 0060087 // relaxation of vascular smooth muscle // inferred from electronic annotation 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0005901 // caveola // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // not recorded /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0043195 // terminal button // not recorded /// 0043195 // terminal button // inferred from electronic annotation /// 0044444 // cytoplasmic part // not recorded /// 0044444 // cytoplasmic part // inferred from electronic annotation /// 0045211 // postsynaptic membrane // not recorded /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048787 // presynaptic active zone membrane // inferred from direct assay 0003779 // actin binding // not recorded /// 0003779 // actin binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // not recorded /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // not recorded /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0015269 // calcium-activated potassium channel activity // inferred from direct assay /// 0015269 // calcium-activated potassium channel activity // not recorded /// 0015269 // calcium-activated potassium channel activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0060072 // large conductance calcium-activated potassium channel activity // not recorded /// 0060072 // large conductance calcium-activated potassium channel activity // inferred from electronic annotation 1372930_at AI411381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411381 /DB_XREF=gi:4254885 /DB_XREF=EST239675 /CLONE=RKIES70 /FEA=EST /CNT=11 /TID=Rn.6459.1 /TIER=Stack /STK=10 /UG=Rn.6459 /UG_TITLE=ESTs, Weakly similar to SP10_MOUSE NUCLEAR AUTOANTIGEN SP-100 (SPECKLED 100 KDA) (NUCLEAR DOT-ASSOCIATED SP100 PROTEIN) (M.musculus) AI411381 SP110 nuclear body protein Sp110 301570 NM_001034137 0006350 // transcription // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0009617 // response to bacterium // not recorded /// 0045087 // innate immune response // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1372931_at AI178741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178741 /DB_XREF=gi:3729379 /DB_XREF=EST222422 /CLONE=RSPBK50 /FEA=EST /CNT=11 /TID=Rn.6226.1 /TIER=Stack /STK=10 /UG=Rn.6226 /UG_TITLE=ESTs AI178741 PRA1 domain family, member 2 Praf2 367743 NM_001109013 1372932_at BI302258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302258 /DB_XREF=gi:14978543 /DB_XREF=UI-R-DM0-ciq-c-23-0-UI.s1 /CLONE=UI-R-DM0-ciq-c-23-0-UI /FEA=EST /CNT=11 /TID=Rn.14680.1 /TIER=Stack /STK=10 /UG=Rn.14680 /UG_TITLE=ESTs BI302258 ribosomal RNA processing 1 homolog (S. cerevisiae) Rrp1 309674 NM_001012073 0006364 // rRNA processing // inferred from electronic annotation 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0030688 // preribosome, small subunit precursor // inferred from electronic annotation 1372933_at AA892780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892780 /DB_XREF=gi:3019659 /DB_XREF=EST196583 /CLONE=RKIAX23 /FEA=EST /CNT=11 /TID=Rn.14793.1 /TIER=Stack /STK=10 /UG=Rn.14793 /UG_TITLE=ESTs AA892780 sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae) Sirt7 303745 NM_001107073 0006342 // chromatin silencing // inferred from electronic annotation /// 0006476 // protein deacetylation // inferred from electronic annotation /// 0007072 // positive regulation of transcription on exit from mitosis // inferred from electronic annotation /// 0009303 // rRNA transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005730 // nucleolus // inferred from electronic annotation /// 0005731 // nucleolus organizer region // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016811 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides // inferred from electronic annotation /// 0070403 // NAD binding // inferred from electronic annotation 1372934_at AI104146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104146 /DB_XREF=gi:3704934 /DB_XREF=EST213435 /CLONE=RHEBX81 /FEA=EST /CNT=11 /TID=Rn.25150.1 /TIER=Stack /STK=10 /UG=Rn.25150 /UG_TITLE=ESTs AI104146 similar to 1700019E19Rik protein RGD1307392 299209 NM_001134525 1372935_at AI598550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598550 /DB_XREF=gi:4607584 /DB_XREF=EST250239 /CLONE=REMDS49 /FEA=EST /CNT=11 /TID=Rn.19102.1 /TIER=Stack /STK=10 /UG=Rn.19102 /UG_TITLE=ESTs AI598550 transmembrane protein 119 Tmem119 304581 NM_001107155 0016021 // integral to membrane // inferred from electronic annotation 1372936_at BF395833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395833 /DB_XREF=gi:11380804 /DB_XREF=UI-R-BT1-bkc-g-08-0-UI.s1 /CLONE=UI-R-BT1-bkc-g-08-0-UI /FEA=EST /CNT=11 /TID=Rn.38906.1 /TIER=Stack /STK=10 /UG=Rn.38906 /UG_TITLE=ESTs, Highly similar to PURKINJE CELL PROTEIN 2 (M.musculus) BF395833 Purkinje cell protein 2 Pcp2 304195 NM_001107116 0007165 // signal transduction // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005096 // GTPase activator activity // inferred from electronic annotation 1372937_at AI012601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012601 /DB_XREF=gi:3226433 /DB_XREF=EST207052 /CLONE=RPLAZ42 /FEA=EST /CNT=11 /TID=Rn.8082.1 /TIER=Stack /STK=10 /UG=Rn.8082 /UG_TITLE=ESTs AI012601 1372938_at AI575671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575671 /DB_XREF=gi:4560047 /DB_XREF=UI-R-Y0-vi-h-04-0-UI.s1 /CLONE=UI-R-Y0-vi-h-04-0-UI /FEA=EST /CNT=11 /TID=Rn.8513.1 /TIER=Stack /STK=10 /UG=Rn.8513 /UG_TITLE=ESTs AI575671 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 Smarce1 303518 NM_001024993 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0016514 // SWI/SNF complex // not recorded /// 0017053 // transcriptional repressor complex // not recorded /// 0071564 // npBAF complex // not recorded /// 0071565 // nBAF complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008080 // N-acetyltransferase activity // not recorded /// 0047485 // protein N-terminus binding // not recorded 1372939_at AI010173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010173 /DB_XREF=gi:3224005 /DB_XREF=EST204624 /CLONE=RLUBU67 /FEA=EST /CNT=11 /TID=Rn.3419.1 /TIER=Stack /STK=10 /UG=Rn.3419 /UG_TITLE=ESTs AI010173 NudC domain containing 2 Nudcd2 287199 NM_001009621 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 1372940_at BM389329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389329 /DB_XREF=gi:18189382 /DB_XREF=UI-R-DZ0-cko-n-10-0-UI.s1 /CLONE=UI-R-DZ0-cko-n-10-0-UI /FEA=EST /CNT=26 /TID=Rn.31760.1 /TIER=Stack /STK=10 /UG=Rn.31760 /UG_TITLE=ESTs BM389329 RGD1562339 RGD1562339 498107 XM_001058431 /// XM_579785 1372941_at BI273897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI273897 /DB_XREF=gi:14884309 /DB_XREF=UI-R-CW0-bwa-c-03-0-UI.s1 /CLONE=UI-R-CW0-bwa-c-03-0-UI /FEA=EST /CNT=22 /TID=Rn.9940.2 /TIER=Stack /STK=10 /UG=Rn.9940 /LL=117556 /UG_GENE=Sv2b /UG_TITLE=synaptic vesicle glycoprotein 2 b BI273897 p53 and DNA damage regulated 1 Pdrg1 296278 NM_001014762 0006457 // protein folding // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016272 // prefoldin complex // inferred from electronic annotation 0051082 // unfolded protein binding // inferred from electronic annotation 1372942_at AA943578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943578 /DB_XREF=gi:3103494 /DB_XREF=EST199077 /CLONE=RBRAL70 /FEA=EST /CNT=15 /TID=Rn.7400.1 /TIER=Stack /STK=10 /UG=Rn.7400 /UG_TITLE=ESTs, Moderately similar to RR46_HUMAN Exosome complex exonuclease RRP46 (Ribosomal RNA processing protein 46) (H.sapiens) AA943578 exosome component 5 Exosc5 308441 NM_001107493 0006396 // RNA processing // inferred from electronic annotation 0000175 // 3'-5'-exoribonuclease activity // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372943_at AI072985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072985 /DB_XREF=gi:3399179 /DB_XREF=UI-R-Y0-ly-h-07-0-UI.s1 /CLONE=UI-R-Y0-ly-h-07-0-UI /FEA=EST /CNT=14 /TID=Rn.20321.1 /TIER=Stack /STK=10 /UG=Rn.20321 /UG_TITLE=ESTs, Highly similar to Y144_HUMAN HYPOTHETICAL PROTEIN KIAA0144 (H.sapiens) AI072985 similar to Ubiquitin-associated protein 2-like LOC497952 497952 XR_005763 /// XR_085561 1372944_at BI275710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275710 /DB_XREF=gi:14919891 /DB_XREF=UI-R-CW0-bwm-g-06-0-UI.s1 /CLONE=UI-R-CW0-bwm-g-06-0-UI /FEA=EST /CNT=14 /TID=Rn.3095.1 /TIER=Stack /STK=10 /UG=Rn.3095 /UG_TITLE=ESTs, Highly similar to DRG2 MOUSE DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN 2 (M.musculus) BI275710 developmentally regulated GTP binding protein 2 Drg2 497915 XM_001076012 /// XM_573102 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1372945_at BI296751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296751 /DB_XREF=gi:14961491 /DB_XREF=UI-R-CV2-cgv-h-04-0-UI.s1 /CLONE=UI-R-CV2-cgv-h-04-0-UI /FEA=EST /CNT=13 /TID=Rn.52988.1 /TIER=Stack /STK=10 /UG=Rn.52988 /UG_TITLE=ESTs, Weakly similar to T27095 hypothetical protein Y51H1A.4 - Caenorhabditis elegans (C.elegans) BI296751 inhibitor of growth family, member 3 Ing3 312154 NM_001034107 0006350 // transcription // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0040008 // regulation of growth // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043967 // histone H4 acetylation // not recorded /// 0043967 // histone H4 acetylation // inferred from sequence or structural similarity /// 0043967 // histone H4 acetylation // inferred from electronic annotation /// 0043968 // histone H2A acetylation // not recorded /// 0043968 // histone H2A acetylation // inferred from sequence or structural similarity /// 0043968 // histone H2A acetylation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0032777 // Piccolo NuA4 histone acetyltransferase complex // not recorded /// 0032777 // Piccolo NuA4 histone acetyltransferase complex // inferred from sequence or structural similarity /// 0032777 // Piccolo NuA4 histone acetyltransferase complex // inferred from electronic annotation /// 0035267 // NuA4 histone acetyltransferase complex // not recorded /// 0035267 // NuA4 histone acetyltransferase complex // inferred from sequence or structural similarity /// 0035267 // NuA4 histone acetyltransferase complex // inferred from electronic annotation 0004402 // histone acetyltransferase activity // not recorded /// 0004402 // histone acetyltransferase activity // inferred from sequence or structural similarity /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372946_at AI411957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411957 /DB_XREF=gi:4255461 /DB_XREF=EST240251 /CLONE=RKIES12 /FEA=EST /CNT=13 /TID=Rn.13658.1 /TIER=Stack /STK=10 /UG=Rn.13658 /UG_TITLE=ESTs AI411957 similar to RIKEN cDNA 1110012L19 RGD1562747 292328 NM_001106212 1372947_at BG672591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672591 /DB_XREF=gi:13894690 /DB_XREF=DRNCLH08 /CLONE=DRNCLH08 /FEA=EST /CNT=13 /TID=Rn.23626.1 /TIER=Stack /STK=10 /UG=Rn.23626 /UG_TITLE=ESTs BG672591 plastin 3 (T-isoform) Pls3 81748 NM_031084 0042491 // auditory receptor cell differentiation // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0032420 // stereocilium // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372948_at BG376761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376761 /DB_XREF=gi:13301233 /DB_XREF=UI-R-CU0-buv-f-06-0-UI.s1 /CLONE=UI-R-CU0-buv-f-06-0-UI /FEA=EST /CNT=13 /TID=Rn.22630.1 /TIER=Stack /STK=10 /UG=Rn.22630 /UG_TITLE=ESTs BG376761 mitochondrial ribosomal protein 63 Mrp63 691814 NM_001109649 0006412 // translation // not recorded 0005739 // mitochondrion // not recorded /// 0005761 // mitochondrial ribosome // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // not recorded 1372949_at BG663067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663067 /DB_XREF=gi:13884989 /DB_XREF=DRA07G07 /CLONE=DRA07G07 /FEA=EST /CNT=12 /TID=Rn.24860.1 /TIER=Stack /STK=10 /UG=Rn.24860 /UG_TITLE=ESTs BG663067 Septin 11 Sept11 305227 NM_001107208 0007049 // cell cycle // inferred from electronic annotation /// 0051291 // protein heterooligomerization // not recorded /// 0051301 // cell division // inferred from electronic annotation 0001725 // stress fiber // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0031105 // septin complex // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1372950_at AI600006 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600006 /DB_XREF=gi:4609054 /DB_XREF=EST251709 /CLONE=REMEK82 /FEA=EST /CNT=12 /TID=Rn.3352.1 /TIER=Stack /STK=10 /UG=Rn.3352 /UG_TITLE=ESTs AI600006 blocked early in transport 1 homolog (S. cerevisiae) like Bet1l 54400 NM_019368 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // not recorded 0000139 // Golgi membrane // inferred from direct assay /// 0000139 // Golgi membrane // not recorded /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from direct assay 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005484 // SNAP receptor activity // not recorded 1372951_at BI274172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274172 /DB_XREF=gi:14884841 /DB_XREF=UI-R-CW0-bwf-g-12-0-UI.s1 /CLONE=UI-R-CW0-bwf-g-12-0-UI /FEA=EST /CNT=11 /TID=Rn.21828.1 /TIER=Stack /STK=10 /UG=Rn.21828 /UG_TITLE=ESTs BI274172 Cdk5 and Abl enzyme substrate 2 Cables2 311703 XM_001059501 /// XM_230952 0051302 // regulation of cell division // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0016538 // cyclin-dependent protein kinase regulator activity // inferred from electronic annotation 1372952_at BI291286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291286 /DB_XREF=gi:14950682 /DB_XREF=UI-R-CV2-cgn-g-11-0-UI.s1 /CLONE=UI-R-CV2-cgn-g-11-0-UI /FEA=EST /CNT=11 /TID=Rn.20640.1 /TIER=Stack /STK=10 /UG=Rn.20640 /UG_TITLE=ESTs BI291286 cytosolic thiouridylase subunit 2 homolog (S. pombe) Ctu2 292069 NM_001037094 0002098 // tRNA wobble uridine modification // inferred from sequence or structural similarity /// 0008033 // tRNA processing // inferred from electronic annotation /// 0034227 // tRNA thio-modification // inferred from sequence or structural similarity 0005625 // soluble fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0043234 // protein complex // not recorded 0000049 // tRNA binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded 1372953_at AI101330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101330 /DB_XREF=gi:3706248 /DB_XREF=EST210619 /CLONE=RBRBL55 /FEA=EST /CNT=11 /TID=Rn.13744.1 /TIER=Stack /STK=10 /UG=Rn.13744 /UG_TITLE=ESTs AI101330 neurocalcin delta Ncald 553106 NM_001024371 0005622 // intracellular // not recorded /// 0005829 // cytosol // not recorded 0003779 // actin binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0015631 // tubulin binding // not recorded /// 0030276 // clathrin binding // not recorded 1372954_at BF404393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404393 /DB_XREF=gi:11392368 /DB_XREF=UI-R-CA1-bie-f-11-0-UI.s1 /CLONE=UI-R-CA1-bie-f-11-0-UI /FEA=EST /CNT=11 /TID=Rn.18889.1 /TIER=Stack /STK=10 /UG=Rn.18889 /UG_TITLE=ESTs BF404393 1372955_at BI282720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282720 /DB_XREF=gi:14933768 /DB_XREF=UI-R-CW0s-cce-d-07-0-UI.s1 /CLONE=UI-R-CW0s-cce-d-07-0-UI /FEA=EST /CNT=11 /TID=Rn.6791.1 /TIER=Stack /STK=10 /UG=Rn.6791 /UG_TITLE=ESTs BI282720 serine/threonine kinase 38 like Stk38l 691337 NM_001083336 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1372956_at BF420425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420425 /DB_XREF=gi:11408454 /DB_XREF=UI-R-BJ2-bpw-d-02-0-UI.s1 /CLONE=UI-R-BJ2-bpw-d-02-0-UI /FEA=EST /CNT=11 /TID=Rn.24089.1 /TIER=Stack /STK=10 /UG=Rn.24089 /UG_TITLE=ESTs, Weakly similar to T27753 hypothetical protein ZK1320.7 - Caenorhabditis elegans (C.elegans) BF420425 HLA-B associated transcript 4 Bat4 415064 NM_001034157 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372957_at BE101323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101323 /DB_XREF=gi:8493235 /DB_XREF=UI-R-BJ1-aui-f-10-0-UI.s1 /CLONE=UI-R-BJ1-aui-f-10-0-UI /FEA=EST /CNT=11 /TID=Rn.24230.1 /TIER=Stack /STK=10 /UG=Rn.24230 /UG_TITLE=ESTs BE101323 1372958_at BE111986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111986 /DB_XREF=gi:8504091 /DB_XREF=UI-R-BJ1-ave-d-03-0-UI.s1 /CLONE=UI-R-BJ1-ave-d-03-0-UI /FEA=EST /CNT=11 /TID=Rn.35476.1 /TIER=Stack /STK=10 /UG=Rn.35476 /UG_TITLE=ESTs BE111986 OTU domain, ubiquitin aldehyde binding 1 Otub1 293705 NM_001106332 0019538 // protein metabolic process // inferred from electronic annotation /// 0071108 // protein K48-linked deubiquitination // not recorded /// 0071108 // protein K48-linked deubiquitination // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation 0004843 // ubiquitin-specific protease activity // not recorded /// 0004843 // ubiquitin-specific protease activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008242 // omega peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019784 // NEDD8-specific protease activity // not recorded /// 0019784 // NEDD8-specific protease activity // inferred from sequence or structural similarity /// 0043130 // ubiquitin binding // not recorded /// 0043130 // ubiquitin binding // inferred from sequence or structural similarity 1372959_at BI289467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289467 /DB_XREF=gi:14947068 /DB_XREF=UI-R-DK0-cfh-d-06-0-UI.s1 /CLONE=UI-R-DK0-cfh-d-06-0-UI /FEA=EST /CNT=11 /TID=Rn.6965.1 /TIER=Stack /STK=10 /UG=Rn.6965 /UG_TITLE=ESTs, Weakly similar to NUCLEOSIDE DIPHOSPHATE KINASE B (R.norvegicus) BI289467 non-metastatic cells 4, protein expressed in Nme4 685679 NM_001109478 0006183 // GTP biosynthetic process // inferred from electronic annotation /// 0006228 // UTP biosynthetic process // inferred from electronic annotation /// 0006241 // CTP biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004550 // nucleoside diphosphate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1372960_a_at AA892497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892497 /DB_XREF=gi:3019376 /DB_XREF=EST196300 /CLONE=RKIAS18 /FEA=EST /CNT=11 /TID=Rn.22727.2 /TIER=Stack /STK=10 /UG=Rn.22727 /LL=64134 /UG_GENE=Xylt2 /UG_TITLE=xylosyltransferase 2 AA892497 xylosyltransferase II Xylt2 64134 NM_022296 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008375 // acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030158 // protein xylosyltransferase activity // inferred from electronic annotation 1372961_at BE101165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101165 /DB_XREF=gi:8493075 /DB_XREF=UI-R-BJ1-auh-g-12-0-UI.s1 /CLONE=UI-R-BJ1-auh-g-12-0-UI /FEA=EST /CNT=11 /TID=Rn.2737.1 /TIER=Stack /STK=10 /UG=Rn.2737 /UG_TITLE=ESTs BE101165 transmembrane and ubiquitin-like domain containing 1 Tmub1 362301 NM_001080153 /// NM_198781 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1372962_at AI599123 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599123 /DB_XREF=gi:4608171 /DB_XREF=EST250826 /CLONE=REMEB69 /FEA=EST /CNT=11 /TID=Rn.17227.1 /TIER=Stack /STK=10 /UG=Rn.17227 /UG_TITLE=ESTs, Highly similar to TRBP MOUSE PROTAMINE-1 RNA BINDING PROTEIN (M.musculus) AI599123 TAR (HIV-1) RNA binding protein 2 Tarbp2 363006 NM_001034941 0006417 // regulation of translation // inferred from electronic annotation /// 0030422 // production of siRNA involved in RNA interference // not recorded /// 0030422 // production of siRNA involved in RNA interference // inferred from sequence or structural similarity /// 0030422 // production of siRNA involved in RNA interference // inferred from electronic annotation /// 0030423 // targeting of mRNA for destruction involved in RNA interference // not recorded /// 0030423 // targeting of mRNA for destruction involved in RNA interference // inferred from sequence or structural similarity /// 0030423 // targeting of mRNA for destruction involved in RNA interference // inferred from electronic annotation /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0031054 // pre-microRNA processing // not recorded /// 0031054 // pre-microRNA processing // inferred from sequence or structural similarity /// 0031054 // pre-microRNA processing // inferred from electronic annotation /// 0035280 // miRNA loading onto RISC involved in gene silencing by miRNA // inferred from electronic annotation /// 0035280 // miRNA loading onto RISC involved in gene silencing by miRNA // not recorded /// 0045070 // positive regulation of viral genome replication // not recorded /// 0045070 // positive regulation of viral genome replication // inferred from sequence or structural similarity /// 0045070 // positive regulation of viral genome replication // inferred from electronic annotation /// 0046782 // regulation of viral transcription // not recorded /// 0046782 // regulation of viral transcription // inferred from sequence or structural similarity /// 0046782 // regulation of viral transcription // inferred from electronic annotation /// 0050689 // negative regulation of defense response to virus by host // not recorded /// 0050689 // negative regulation of defense response to virus by host // inferred from sequence or structural similarity /// 0050689 // negative regulation of defense response to virus by host // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016442 // RNA-induced silencing complex // not recorded /// 0016442 // RNA-induced silencing complex // inferred from sequence or structural similarity /// 0016442 // RNA-induced silencing complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035197 // siRNA binding // not recorded /// 0035197 // siRNA binding // inferred from sequence or structural similarity /// 0035197 // siRNA binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1372963_at BG378723 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378723 /DB_XREF=gi:13303195 /DB_XREF=UI-R-CV1-bvs-a-12-0-UI.s1 /CLONE=UI-R-CV1-bvs-a-12-0-UI /FEA=EST /CNT=10 /TID=Rn.66597.1 /TIER=Stack /STK=10 /UG=Rn.66597 /UG_TITLE=ESTs BG378723 1372964_at BI294751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294751 /DB_XREF=gi:14957510 /DB_XREF=UI-R-DK0-ceb-f-09-0-UI.s1 /CLONE=UI-R-DK0-ceb-f-09-0-UI /FEA=EST /CNT=10 /TID=Rn.65864.3 /TIER=Stack /STK=10 /UG=Rn.65864 /LL=85383 /UG_GENE=LOC85383 /UG_TITLE=unknown Glu-Pro dipeptide repeat protein BI294751 1372965_at BI296595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296595 /DB_XREF=gi:14961176 /DB_XREF=UI-R-CV2-cgt-a-11-0-UI.s1 /CLONE=UI-R-CV2-cgt-a-11-0-UI /FEA=EST /CNT=10 /TID=Rn.67005.1 /TIER=Stack /STK=10 /UG=Rn.67005 /UG_TITLE=ESTs BI296595 1372966_at AI178784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178784 /DB_XREF=gi:3729422 /DB_XREF=EST222466 /CLONE=RSPBM56 /FEA=EST /CNT=10 /TID=Rn.20566.1 /TIER=Stack /STK=10 /UG=Rn.20566 /UG_TITLE=ESTs AI178784 major facilitator superfamily domain containing 2 Mfsd2 298504 NM_001106683 0055085 // transmembrane transport // inferred from electronic annotation 1372967_at BI280323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280323 /DB_XREF=gi:14928993 /DB_XREF=UI-R-DE0-cag-f-02-0-UI.s1 /CLONE=UI-R-DE0-cag-f-02-0-UI /FEA=EST /CNT=10 /TID=Rn.23685.1 /TIER=Stack /STK=10 /UG=Rn.23685 /UG_TITLE=ESTs BI280323 RhoA/RAC/CDC42 exchange factor Geft 314904 NM_199395 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030016 // myofibril // not recorded /// 0030016 // myofibril // inferred from sequence or structural similarity /// 0030017 // sarcomere // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372968_at BM385950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385950 /DB_XREF=gi:18186003 /DB_XREF=UI-R-DN1-ckf-k-10-0-UI.s1 /CLONE=UI-R-DN1-ckf-k-10-0-UI /FEA=EST /CNT=10 /TID=Rn.43462.1 /TIER=Stack /STK=10 /UG=Rn.43462 /UG_TITLE=ESTs BM385950 SET binding factor 1 Sbf1 300147 XM_001054780 /// XM_217021 0007283 // spermatogenesis // not recorded 0016791 // phosphatase activity // inferred from electronic annotation 1372969_at BI289651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289651 /DB_XREF=gi:14947435 /DB_XREF=UI-R-DK0-cfi-e-06-0-UI.s1 /CLONE=UI-R-DK0-cfi-e-06-0-UI /FEA=EST /CNT=10 /TID=Rn.6837.1 /TIER=Stack /STK=10 /UG=Rn.6837 /UG_TITLE=ESTs BI289651 F-box and leucine-rich repeat protein 3 Fbxl3 306129 NM_001100568 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372970_at BM389664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389664 /DB_XREF=gi:18189717 /DB_XREF=UI-R-CN1-cjo-m-21-0-UI.s1 /CLONE=UI-R-CN1-cjo-m-21-0-UI /FEA=EST /CNT=10 /TID=Rn.16376.1 /TIER=Stack /STK=10 /UG=Rn.16376 /UG_TITLE=ESTs BM389664 Sh3kbp1 binding protein 1 Shkbp1 292735 XM_214873 0006813 // potassium ion transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1372971_at BI291301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291301 /DB_XREF=gi:14950712 /DB_XREF=UI-R-CV2-cgo-b-07-0-UI.s1 /CLONE=UI-R-CV2-cgo-b-07-0-UI /FEA=EST /CNT=10 /TID=Rn.7108.2 /TIER=Stack /STK=10 /UG=Rn.7108 /UG_TITLE=ESTs, Highly similar to T46390 hypothetical protein DKFZp434C1920.1 (H.sapiens) BI291301 similar to Hypothetical protein MGC11690 RGD1305178 311855 NM_001025003 1372972_at BI291264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291264 /DB_XREF=gi:14950643 /DB_XREF=UI-R-CV2-cgn-e-03-0-UI.s1 /CLONE=UI-R-CV2-cgn-e-03-0-UI /FEA=EST /CNT=10 /TID=Rn.53267.1 /TIER=Stack /STK=10 /UG=Rn.53267 /UG_TITLE=ESTs BI291264 1372973_at BM390574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390574 /DB_XREF=gi:18190627 /DB_XREF=UI-R-CN1-cjr-k-03-0-UI.s1 /CLONE=UI-R-CN1-cjr-k-03-0-UI /FEA=EST /CNT=10 /TID=Rn.20271.1 /TIER=Stack /STK=10 /UG=Rn.20271 /UG_TITLE=ESTs BM390574 Lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) Lss 81681 NM_031049 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from direct assay /// 0006695 // cholesterol biosynthetic process // inferred from mutant phenotype /// 0006695 // cholesterol biosynthetic process // not recorded /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0016125 // sterol metabolic process // inferred from mutant phenotype 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000250 // lanosterol synthase activity // inferred from direct assay /// 0000250 // lanosterol synthase activity // inferred from mutant phenotype /// 0000250 // lanosterol synthase activity // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0016866 // intramolecular transferase activity // inferred from electronic annotation 1372974_at BM384605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384605 /DB_XREF=gi:18184658 /DB_XREF=UI-R-DY0-ckl-m-07-0-UI.s1 /CLONE=UI-R-DY0-ckl-m-07-0-UI /FEA=EST /CNT=10 /TID=Rn.44131.1 /TIER=Stack /STK=10 /UG=Rn.44131 /UG_TITLE=ESTs BM384605 1372975_at BI278083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278083 /DB_XREF=gi:14924583 /DB_XREF=UI-R-CZ0-byd-b-03-0-UI.s1 /CLONE=UI-R-CZ0-byd-b-03-0-UI /FEA=EST /CNT=10 /TID=Rn.79348.1 /TIER=Stack /STK=10 /UG=Rn.79348 /UG_TITLE=ESTs, Highly similar to LORICRIN (M.musculus) BI278083 loricrin Lor 502541 XM_001057506 /// XM_580253 0018149 // peptide cross-linking // not recorded /// 0030216 // keratinocyte differentiation // not recorded 0001533 // cornified envelope // not recorded /// 0009898 // internal side of plasma membrane // not recorded 0005198 // structural molecule activity // not recorded /// 0005200 // structural constituent of cytoskeleton // not recorded /// 0005515 // protein binding // not recorded /// 0030280 // structural constituent of epidermis // not recorded /// 0030674 // protein binding, bridging // not recorded 1372976_at BI294842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294842 /DB_XREF=gi:14957690 /DB_XREF=UI-R-DK0-cec-g-09-0-UI.s1 /CLONE=UI-R-DK0-cec-g-09-0-UI /FEA=EST /CNT=10 /TID=Rn.7454.1 /TIER=Stack /STK=10 /UG=Rn.7454 /UG_TITLE=ESTs, Weakly similar to T08702 hypothetical protein DKFZp564O243.1 (H.sapiens) BI294842 abhydrolase domain containing 14A Abhd14a 300982 NM_001009670 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation 1372977_at BI291366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291366 /DB_XREF=gi:14950841 /DB_XREF=UI-R-CV2-cgp-c-05-0-UI.s1 /CLONE=UI-R-CV2-cgp-c-05-0-UI /FEA=EST /CNT=10 /TID=Rn.66324.1 /TIER=Stack /STK=10 /UG=Rn.66324 /UG_TITLE=ESTs, Weakly similar to A53714 protein kinase (H.sapiens) BI291366 mitogen-activated protein kinase kinase kinase kinase 5 Map4k5 503027 NM_001192016 /// XM_001076790 /// XM_002726748 /// XM_002729632 /// XM_578547 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006950 // response to stress // not recorded /// 0007243 // intracellular protein kinase cascade // not recorded 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded 1372978_at BI291218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291218 /DB_XREF=gi:14950552 /DB_XREF=UI-R-CV2-cgm-e-05-0-UI.s1 /CLONE=UI-R-CV2-cgm-e-05-0-UI /FEA=EST /CNT=10 /TID=Rn.33902.1 /TIER=Stack /STK=10 /UG=Rn.33902 /UG_TITLE=ESTs BI291218 1372979_at BI295828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295828 /DB_XREF=gi:14959666 /DB_XREF=UI-R-DK0-cfb-b-05-0-UI.s1 /CLONE=UI-R-DK0-cfb-b-05-0-UI /FEA=EST /CNT=10 /TID=Rn.9334.1 /TIER=Stack /STK=10 /UG=Rn.9334 /UG_TITLE=ESTs BI295828 1372980_at AA819250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819250 /DB_XREF=gi:4227910 /DB_XREF=UI-R-A0-al-c-04-0-UI.s2 /CLONE=UI-R-A0-al-c-04-0-UI /FEA=EST /CNT=10 /TID=Rn.1696.1 /TIER=Stack /STK=10 /UG=Rn.1696 /UG_TITLE=ESTs AA819250 tetraspanin 33 Tspan33 500065 NM_001109227 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1372981_at BI294885 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294885 /DB_XREF=gi:14957776 /DB_XREF=UI-R-DK0-ced-c-08-0-UI.s1 /CLONE=UI-R-DK0-ced-c-08-0-UI /FEA=EST /CNT=10 /TID=Rn.41415.1 /TIER=Stack /STK=10 /UG=Rn.41415 /UG_TITLE=ESTs, Moderately similar to C270_MOUSE Protein C21orf70 homolog (M.musculus) BI294885 similar to C21orf70 protein RGD1311257 294333 NM_001008307 1372982_at BF387153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387153 /DB_XREF=gi:11371977 /DB_XREF=UI-R-CA1-bbq-b-09-0-UI.s1 /CLONE=UI-R-CA1-bbq-b-09-0-UI /FEA=EST /CNT=10 /TID=Rn.43455.1 /TIER=Stack /STK=10 /UG=Rn.43455 /UG_TITLE=ESTs BF387153 protein phosphatase 3, regulatory subunit B, alpha isoform Ppp3r1 29748 NM_017309 0001837 // epithelial to mesenchymal transition // not recorded /// 0006470 // protein dephosphorylation // inferred from direct assay /// 0007507 // heart development // not recorded /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0034504 // protein localization in nucleus // not recorded /// 0060487 // lung epithelial cell differentiation // not recorded 0005829 // cytosol // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1372983_at BF398986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398986 /DB_XREF=gi:11383990 /DB_XREF=UI-R-CA1-biz-i-02-0-UI.s1 /CLONE=UI-R-CA1-biz-i-02-0-UI /FEA=EST /CNT=10 /TID=Rn.61779.1 /TIER=Stack /STK=10 /UG=Rn.61779 /UG_TITLE=ESTs BF398986 1372984_at BI291204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291204 /DB_XREF=gi:14950525 /DB_XREF=UI-R-CV2-cgm-a-10-0-UI.s1 /CLONE=UI-R-CV2-cgm-a-10-0-UI /FEA=EST /CNT=10 /TID=Rn.66948.1 /TIER=Stack /STK=10 /UG=Rn.66948 /UG_TITLE=ESTs BI291204 1372985_at BG378167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378167 /DB_XREF=gi:13302639 /DB_XREF=UI-R-CV1-bvo-g-07-0-UI.s1 /CLONE=UI-R-CV1-bvo-g-07-0-UI /FEA=EST /CNT=10 /TID=Rn.13602.1 /TIER=Stack /STK=10 /UG=Rn.13602 /UG_TITLE=ESTs BG378167 zinc finger protein 444 Zfp444 292569 NM_001169143 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372986_at BF394170 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394170 /DB_XREF=gi:11379034 /DB_XREF=UI-R-CA0-bha-h-05-0-UI.s1 /CLONE=UI-R-CA0-bha-h-05-0-UI /FEA=EST /CNT=10 /TID=Rn.26699.1 /TIER=Stack /STK=10 /UG=Rn.26699 /UG_TITLE=ESTs BF394170 Jun dimerization protein 2 Jdp2 116674 NM_053894 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046983 // protein dimerization activity // inferred from electronic annotation 1372987_at BF393934 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393934 /DB_XREF=gi:11378798 /DB_XREF=UI-R-CA0-bgw-g-10-0-UI.s1 /CLONE=UI-R-CA0-bgw-g-10-0-UI /FEA=EST /CNT=10 /TID=Rn.38688.1 /TIER=Stack /STK=10 /UG=Rn.38688 /UG_TITLE=ESTs, Weakly similar to TYK2_HUMAN NON-RECEPTOR TYROSINE-PROTEIN KINASE TYK2 (H.sapiens) BF393934 1372988_at BF397012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397012 /DB_XREF=gi:11381995 /DB_XREF=UI-R-BS2-beb-g-11-0-UI.s1 /CLONE=UI-R-BS2-beb-g-11-0-UI /FEA=EST /CNT=10 /TID=Rn.6804.1 /TIER=Stack /STK=10 /UG=Rn.6804 /UG_TITLE=ESTs, Moderately similar to T17337 hypothetical protein DKFZp434K115.1 (H.sapiens) BF397012 CCR4-NOT transcription complex, subunit 10 Cnot10 316034 NM_001007003 0006457 // protein folding // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation 1372989_at BI296586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296586 /DB_XREF=gi:14961158 /DB_XREF=UI-R-CV2-cgs-h-10-0-UI.s1 /CLONE=UI-R-CV2-cgs-h-10-0-UI /FEA=EST /CNT=10 /TID=Rn.18327.1 /TIER=Stack /STK=10 /UG=Rn.18327 /UG_TITLE=ESTs BI296586 zinc finger, DHHC-type containing 14 Zdhhc14 499014 NM_001039343 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372990_at AI179264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179264 /DB_XREF=gi:3729902 /DB_XREF=EST222957 /CLONE=RSPCE47 /FEA=EST /CNT=10 /TID=Rn.23880.1 /TIER=Stack /STK=10 /UG=Rn.23880 /UG_TITLE=ESTs, Moderately similar to LZIP-1 and LZIP-2 (M.musculus) AI179264 cAMP responsive element binding protein 3 Creb3 298400 NM_001013092 0006350 // transcription // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0050930 // induction of positive chemotaxis // not recorded /// 0051928 // positive regulation of calcium ion transport // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // not recorded /// 0016021 // integral to membrane // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008140 // cAMP response element binding protein binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0031726 // CCR1 chemokine receptor binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1372991_at BG375344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375344 /DB_XREF=gi:13299816 /DB_XREF=UI-R-CV1-bsz-c-11-0-UI.s1 /CLONE=UI-R-CV1-bsz-c-11-0-UI /FEA=EST /CNT=10 /TID=Rn.66304.1 /TIER=Stack /STK=10 /UG=Rn.66304 /UG_TITLE=ESTs BG375344 1372992_at BI298809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298809 /DB_XREF=gi:14975089 /DB_XREF=UI-R-CV2-chn-h-07-0-UI.s1 /CLONE=UI-R-CV2-chn-h-07-0-UI /FEA=EST /CNT=10 /TID=Rn.73455.1 /TIER=Stack /STK=10 /UG=Rn.73455 /UG_TITLE=ESTs BI298809 1372993_at BI299621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299621 /DB_XREF=gi:14975901 /DB_XREF=UI-R-CV2-chj-d-03-0-UI.s1 /CLONE=UI-R-CV2-chj-d-03-0-UI /FEA=EST /CNT=10 /TID=Rn.46516.1 /TIER=Stack /STK=10 /UG=Rn.46516 /UG_TITLE=ESTs, Weakly similar to E-selectin ligand-1 protein (M.musculus) BI299621 1372994_at AA875278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875278 /DB_XREF=gi:4231157 /DB_XREF=UI-R-E0-ce-c-09-0-UI.s1 /CLONE=UI-R-E0-ce-c-09-0-UI /FEA=EST /CNT=10 /TID=Rn.2861.1 /TIER=Stack /STK=10 /UG=Rn.2861 /UG_TITLE=ESTs AA875278 Fanconi anemia, complementation group E Fance 309643 NM_001191718 /// XM_001078335 /// XM_228032 0005515 // protein binding // not recorded 1372995_at AI703715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI703715 /DB_XREF=gi:4991615 /DB_XREF=UI-R-AB1-yx-c-02-0-UI.s1 /CLONE=UI-R-AB1-yx-c-02-0-UI /FEA=EST /CNT=10 /TID=Rn.15035.1 /TIER=Stack /STK=10 /UG=Rn.15035 /UG_TITLE=ESTs AI703715 protein kinase D2 Prkd2 292658 NM_001013895 0006468 // protein phosphorylation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1372996_at AI411245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411245 /DB_XREF=gi:4254749 /DB_XREF=EST239539 /CLONE=RKIEO14 /FEA=EST /CNT=10 /TID=Rn.1804.1 /TIER=Stack /STK=10 /UG=Rn.1804 /UG_TITLE=ESTs, Weakly similar to E.coli YCAC like (Caenorhabditis elegans) (C.elegans) AI411245 similar to isochorismatase domain containing 2 LOC684270 684270 XM_001059344 0003824 // catalytic activity // inferred from electronic annotation 1372997_at AI105243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105243 /DB_XREF=gi:3709370 /DB_XREF=EST214532 /CLONE=RKIBH68 /FEA=EST /CNT=10 /TID=Rn.11624.1 /TIER=Stack /STK=10 /UG=Rn.11624 /UG_TITLE=ESTs AI105243 similar to Protein C22orf13 homolog LOC687713 687713 NM_001134997 1372998_at BG381555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381555 /DB_XREF=gi:13306027 /DB_XREF=UI-R-CT0-buk-f-06-0-UI.s1 /CLONE=UI-R-CT0-buk-f-06-0-UI /FEA=EST /CNT=10 /TID=Rn.26822.1 /TIER=Stack /STK=10 /UG=Rn.26822 /UG_TITLE=ESTs BG381555 1372999_at AI171216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171216 /DB_XREF=gi:3711256 /DB_XREF=EST217170 /CLONE=RMUBH67 /FEA=EST /CNT=10 /TID=Rn.18152.1 /TIER=Stack /STK=10 /UG=Rn.18152 /UG_TITLE=ESTs, Weakly similar to T23140 hypothetical protein H38K22.2b - Caenorhabditis elegans (C.elegans) AI171216 DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae) Dcun1d5 315405 NM_001009696 1373000_at AA818334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818334 /DB_XREF=gi:4198375 /DB_XREF=UI-R-A0-ae-g-05-0-UI.s1 /CLONE=UI-R-A0-ae-g-05-0-UI /FEA=EST /CNT=10 /TID=Rn.33831.1 /TIER=Stack /STK=10 /UG=Rn.33831 /UG_TITLE=ESTs, Weakly similar to down-regulated by v-src gene (Rattus norvegicus) (R.norvegicus) AA818334 sushi-repeat-containing protein, X-linked 2 Srpx2 317181 NM_001108243 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0042325 // regulation of phosphorylation // inferred from electronic annotation /// 0042325 // regulation of phosphorylation // not recorded /// 0048870 // cell motility // inferred from electronic annotation /// 0048870 // cell motility // not recorded /// 0090050 // positive regulation of cell migration involved in sprouting angiogenesis // inferred from electronic annotation /// 0090050 // positive regulation of cell migration involved in sprouting angiogenesis // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1373001_at AA817990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817990 /DB_XREF=gi:4198513 /DB_XREF=UI-R-A0-ah-a-10-0-UI.s1 /CLONE=UI-R-A0-ah-a-10-0-UI /FEA=EST /CNT=10 /TID=Rn.16427.1 /TIER=Stack /STK=10 /UG=Rn.16427 /UG_TITLE=ESTs AA817990 coiled-coil-helix-coiled-coil-helix domain containing 4 Chchd4 312559 NM_001013431 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation 1373002_at AI009481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009481 /DB_XREF=gi:3223313 /DB_XREF=EST203932 /CLONE=RHEBK63 /FEA=EST /CNT=10 /TID=Rn.13913.1 /TIER=Stack /STK=10 /UG=Rn.13913 /UG_TITLE=ESTs, Weakly similar to YLS3_CAEEL Hypothetical 70.7 kDa protein F09G8.3 in chromosome III (C.elegans) AI009481 mitochondrial ribosomal protein S9 Mrps9 301371 NM_001100549 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1373003_at BF414266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414266 /DB_XREF=gi:11402255 /DB_XREF=UI-R-BJ2-boo-d-05-0-UI.s1 /CLONE=UI-R-BJ2-boo-d-05-0-UI /FEA=EST /CNT=10 /TID=Rn.6827.1 /TIER=Stack /STK=10 /UG=Rn.6827 /UG_TITLE=ESTs BF414266 squamous cell carcinoma antigen recognized by T-cells 3 Sart3 304582 NM_001107156 0006396 // RNA processing // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373004_at AA964764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964764 /DB_XREF=gi:4279638 /DB_XREF=UI-R-E1-gq-e-06-0-UI.s1 /CLONE=UI-R-E1-gq-e-06-0-UI /FEA=EST /CNT=10 /TID=Rn.11908.1 /TIER=Stack /STK=10 /UG=Rn.11908 /UG_TITLE=ESTs, Highly similar to A57591 Id-associated protein 1 - mouse (M.musculus) AA964764 DnaJ (Hsp40) homolog, subfamily C, member 2 Dnajc2 116456 NM_053776 0000085 // G2 phase of mitotic cell cycle // inferred from electronic annotation /// 0000085 // G2 phase of mitotic cell cycle // not recorded /// 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation 1373005_at BI282568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282568 /DB_XREF=gi:14933467 /DB_XREF=UI-R-DD0-bzy-e-09-0-UI.s1 /CLONE=UI-R-DD0-bzy-e-09-0-UI /FEA=EST /CNT=10 /TID=Rn.15442.1 /TIER=Stack /STK=10 /UG=Rn.15442 /UG_TITLE=ESTs BI282568 keratinocyte differentiation associated protein Krtdap 65186 0008544 // epidermis development // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 1373006_at AI230091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230091 /DB_XREF=gi:3813978 /DB_XREF=EST226786 /CLONE=REMCQ89 /FEA=EST /CNT=10 /TID=Rn.32121.1 /TIER=Stack /STK=10 /UG=Rn.32121 /UG_TITLE=ESTs AI230091 transmembrane protein 171 Tmem171 293634 NM_001013903 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1373007_at BF417885 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417885 /DB_XREF=gi:11405874 /DB_XREF=UI-R-CA1-blu-d-12-0-UI.s1 /CLONE=UI-R-CA1-blu-d-12-0-UI /FEA=EST /CNT=10 /TID=Rn.63324.1 /TIER=Stack /STK=10 /UG=Rn.63324 /UG_TITLE=ESTs BF417885 1373008_x_at BF386649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386649 /DB_XREF=gi:11371473 /DB_XREF=UI-R-CA1-bbf-h-05-0-UI.s1 /CLONE=UI-R-CA1-bbf-h-05-0-UI /FEA=EST /CNT=10 /TID=Rn.45686.2 /TIER=Stack /STK=10 /UG=Rn.45686 /LL=113912 /UG_GENE=Rtn4r /UG_TITLE=reticulon 4 receptor BF386649 reticulon 4 receptor Rtn4r 113912 NM_053613 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0050770 // regulation of axonogenesis // not recorded /// 0050771 // negative regulation of axonogenesis // not recorded /// 0050771 // negative regulation of axonogenesis // traceable author statement 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0004872 // receptor activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373009_at AI176734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176734 /DB_XREF=gi:3727372 /DB_XREF=EST220327 /CLONE=ROVBW17 /FEA=EST /CNT=10 /TID=Rn.8771.1 /TIER=Stack /STK=10 /UG=Rn.8771 /UG_TITLE=ESTs, Weakly similar to T22286 hypothetical protein F46B6.3 - Caenorhabditis elegans (C.elegans) AI176734 similar to RIKEN cDNA 0610037L13 RGD1559786 298384 NM_001034132 1373010_at BG372059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372059 /DB_XREF=gi:13268596 /DB_XREF=UI-R-CV0-brl-g-11-0-UI.s1 /CLONE=UI-R-CV0-brl-g-11-0-UI /FEA=EST /CNT=10 /TID=Rn.66890.1 /TIER=Stack /STK=10 /UG=Rn.66890 /UG_TITLE=ESTs, Moderately similar to K1CL MOUSE KERATIN, TYPE I CYTOSKELETAL 12 (M.musculus) BG372059 keratin 12 Krt12 360625 NM_001008761 0005882 // intermediate filament // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 1373011_at BE109520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109520 /DB_XREF=gi:8501625 /DB_XREF=UI-R-BJ1-avp-b-05-0-UI.s1 /CLONE=UI-R-BJ1-avp-b-05-0-UI /FEA=EST /CNT=19 /TID=Rn.1498.1 /TIER=Stack /STK=10 /UG=Rn.1498 /UG_TITLE=ESTs BE109520 family with sequence similarity 134, member B Fam134b 619558 NM_001034912 0019233 // sensory perception of pain // not recorded /// 0019233 // sensory perception of pain // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005801 // cis-Golgi network // not recorded /// 0005801 // cis-Golgi network // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373012_at BE109520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109520 /DB_XREF=gi:8501625 /DB_XREF=UI-R-BJ1-avp-b-05-0-UI.s1 /CLONE=UI-R-BJ1-avp-b-05-0-UI /FEA=EST /CNT=19 /TID=Rn.1498.1 /TIER=ConsEnd /STK=0 /UG=Rn.1498 /UG_TITLE=ESTs BE109520 Family with sequence similarity 134, member B Fam134b 619558 NM_001034912 0019233 // sensory perception of pain // not recorded /// 0019233 // sensory perception of pain // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005801 // cis-Golgi network // not recorded /// 0005801 // cis-Golgi network // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373013_at AI009693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009693 /DB_XREF=gi:3223525 /DB_XREF=EST204144 /CLONE=RLUBN35 /FEA=EST /CNT=62 /TID=Rn.1073.1 /TIER=Stack /STK=9 /UG=Rn.1073 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) AI009693 poly(A) binding protein interacting protein 2 Paip2 361309 NM_001014148 0006417 // regulation of translation // inferred from electronic annotation /// 0045947 // negative regulation of translational initiation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0030371 // translation repressor activity // not recorded 1373014_at BE111966 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111966 /DB_XREF=gi:8504071 /DB_XREF=UI-R-BJ1-ave-b-06-0-UI.s1 /CLONE=UI-R-BJ1-ave-b-06-0-UI /FEA=EST /CNT=23 /TID=Rn.2058.1 /TIER=Stack /STK=9 /UG=Rn.2058 /UG_TITLE=ESTs, Weakly similar to JG0163 glucuronyltransferase - rat (R.norvegicus) BE111966 beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I) B3gat3 293722 NM_001128184 0016020 // membrane // inferred from electronic annotation 0015018 // galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1373015_at BI280348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280348 /DB_XREF=gi:14929033 /DB_XREF=UI-R-DE0-cag-h-02-0-UI.s1 /CLONE=UI-R-DE0-cag-h-02-0-UI /FEA=EST /CNT=28 /TID=Rn.4084.1 /TIER=Stack /STK=9 /UG=Rn.4084 /UG_TITLE=ESTs, Weakly similar to RNFB_MOUSE RING FINGER PROTEIN 12 (LIM DOMAIN INTERACTING RING FINGER PROTEIN) (RING FINGER LIM DOMAIN-BINDING PROTEIN) (R-LIM) (M.musculus) BI280348 similar to RING finger protein 11 (NEDD4 WW domain-binding protein 2) (Sid 1669) LOC683844 683844 XM_001067720 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1373016_at AI410493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410493 /DB_XREF=gi:4253997 /DB_XREF=EST238786 /CLONE=RHECX10 /FEA=EST /CNT=33 /TID=Rn.2508.1 /TIER=Stack /STK=9 /UG=Rn.2508 /UG_TITLE=ESTs, Weakly similar to A Chain A, Mammalian Thioredoxin Reductase (R.norvegicus) AI410493 dihydrolipoamide dehydrogenase Dld 298942 NM_199385 0006086 // acetyl-CoA biosynthetic process from pyruvate // inferred from direct assay /// 0006103 // 2-oxoglutarate metabolic process // inferred from direct assay /// 0006120 // mitochondrial electron transport, NADH to ubiquinone // inferred from electronic annotation /// 0006120 // mitochondrial electron transport, NADH to ubiquinone // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0007369 // gastrulation // inferred from electronic annotation /// 0007369 // gastrulation // not recorded /// 0007568 // aging // inferred from expression pattern /// 0009106 // lipoate metabolic process // inferred from direct assay /// 0010510 // regulation of acetyl-CoA biosynthetic process from pyruvate // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0048240 // sperm capacitation // inferred from electronic annotation /// 0048240 // sperm capacitation // not recorded /// 0051068 // dihydrolipoamide metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0019861 // flagellum // inferred from electronic annotation /// 0019861 // flagellum // not recorded /// 0043159 // acrosomal matrix // inferred from electronic annotation /// 0043159 // acrosomal matrix // not recorded /// 0045252 // oxoglutarate dehydrogenase complex // inferred from direct assay /// 0045254 // pyruvate dehydrogenase complex // inferred from direct assay 0004148 // dihydrolipoyl dehydrogenase activity // inferred from direct assay /// 0004148 // dihydrolipoyl dehydrogenase activity // inferred from electronic annotation /// 0004148 // dihydrolipoyl dehydrogenase activity // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0043544 // lipoamide binding // inferred from direct assay /// 0050660 // FAD or FADH2 binding // inferred from direct assay /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from direct assay 1373017_at AI237518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237518 /DB_XREF=gi:3831024 /DB_XREF=EST234080 /CLONE=RPLDA10 /FEA=EST /CNT=23 /TID=Rn.4098.1 /TIER=Stack /STK=9 /UG=Rn.4098 /UG_TITLE=ESTs AI237518 succinate-CoA ligase, GDP-forming, beta subunit Suclg2 362404 NM_001100750 0006099 // tricarboxylic acid cycle // inferred from direct assay /// 0006104 // succinyl-CoA metabolic process // inferred from direct assay /// 0006105 // succinate metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0045244 // succinate-CoA ligase complex (GDP-forming) // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004776 // succinate-CoA ligase (GDP-forming) activity // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019003 // GDP binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay 1373018_at BM390695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390695 /DB_XREF=gi:18190748 /DB_XREF=UI-R-CN1-cjr-o-18-0-UI.s1 /CLONE=UI-R-CN1-cjr-o-18-0-UI /FEA=EST /CNT=21 /TID=Rn.9246.1 /TIER=Stack /STK=9 /UG=Rn.9246 /UG_TITLE=ESTs BM390695 SPRY domain containing 3 Spryd3 315327 NM_001191790 /// XM_001066532 /// XM_235711 1373019_at AI172468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172468 /DB_XREF=gi:3712508 /DB_XREF=EST218479 /CLONE=RMUCA23 /FEA=EST /CNT=19 /TID=Rn.22316.1 /TIER=Stack /STK=9 /UG=Rn.22316 /UG_TITLE=ESTs AI172468 1373020_at BG379323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379323 /DB_XREF=gi:13303795 /DB_XREF=UI-R-CS0-btu-d-10-0-UI.s1 /CLONE=UI-R-CS0-btu-d-10-0-UI /FEA=EST /CNT=19 /TID=Rn.2996.1 /TIER=Stack /STK=9 /UG=Rn.2996 /UG_TITLE=ESTs, Highly similar to YCD6_HUMAN HYPOTHETICAL PROTEIN CGI-136 (H.sapiens) BG379323 mitochondria-associated protein involved in granulocyte-macrophage colony-stimulating factor signal transduction Magmas 679907 NM_001100136 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded 1373021_at AI171823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171823 /DB_XREF=gi:3711863 /DB_XREF=EST217808 /CLONE=RMUBR21 /FEA=EST /CNT=18 /TID=Rn.9073.1 /TIER=Stack /STK=9 /UG=Rn.9073 /UG_TITLE=ESTs AI171823 1373022_at AI231860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231860 /DB_XREF=gi:4135679 /DB_XREF=EST228548 /CLONE=RHECP16 /FEA=EST /CNT=18 /TID=Rn.36087.1 /TIER=Stack /STK=9 /UG=Rn.36087 /UG_TITLE=ESTs AI231860 RAB1, member RAS oncogene family Rab1 81754 NM_031090 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from direct assay /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0032482 // Rab protein signal transduction // inferred by curator 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0043025 // neuronal cell body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation 1373023_at BF555947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555947 /DB_XREF=gi:11665677 /DB_XREF=UI-R-A1-dx-a-10-0-UI.r1 /CLONE=UI-R-A1-dx-a-10-0-UI /FEA=EST /CNT=31 /TID=Rn.3971.1 /TIER=Stack /STK=7 /UG=Rn.3971 /UG_TITLE=ESTs BF555947 1373024_at BI296511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296511 /DB_XREF=gi:14961006 /DB_XREF=UI-R-CV2-cgs-b-02-0-UI.s1 /CLONE=UI-R-CV2-cgs-b-02-0-UI /FEA=EST /CNT=24 /TID=Rn.3070.1 /TIER=Stack /STK=9 /UG=Rn.3070 /UG_TITLE=ESTs, Weakly similar to AP17 MOUSE CLATHRIN COAT ASSEMBLY PROTEIN AP17 (R.norvegicus) BI296511 adaptor-related protein complex 3, sigma 1 subunit Ap3s1 302290 NM_001106933 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0030117 // membrane coat // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 1373025_at AI411618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411618 /DB_XREF=gi:4255122 /DB_XREF=EST239912 /CLONE=ROVES37 /FEA=EST /CNT=18 /TID=Rn.2393.1 /TIER=Stack /STK=9 /UG=Rn.2393 /UG_TITLE=ESTs, Weakly similar to COMPLEMENT C1Q SUBCOMPONENT, B CHAIN PRECURSOR (R.norvegicus) AI411618 complement component 1, q subcomponent, C chain C1qc 362634 NM_001008524 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0030853 // negative regulation of granulocyte differentiation // inferred from electronic annotation /// 0030853 // negative regulation of granulocyte differentiation // not recorded /// 0045087 // innate immune response // inferred from electronic annotation /// 0045650 // negative regulation of macrophage differentiation // inferred from electronic annotation /// 0045650 // negative regulation of macrophage differentiation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 1373026_at BI303598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303598 /DB_XREF=gi:14979878 /DB_XREF=UI-R-DQ0-cja-b-20-0-UI.s1 /CLONE=UI-R-DQ0-cja-b-20-0-UI /FEA=EST /CNT=18 /TID=Rn.18387.1 /TIER=Stack /STK=9 /UG=Rn.18387 /UG_TITLE=ESTs BI303598 1373027_at AA944375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944375 /DB_XREF=gi:3104291 /DB_XREF=EST199874 /CLONE=REMAG18 /FEA=EST /CNT=17 /TID=Rn.1755.1 /TIER=Stack /STK=9 /UG=Rn.1755 /UG_TITLE=ESTs AA944375 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 Mllt4 26955 NM_013217 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005912 // adherens junction // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0005913 // cell-cell adherens junction // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030054 // cell junction // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030274 // LIM domain binding // inferred from physical interaction /// 0050839 // cell adhesion molecule binding // not recorded 1373028_at BE113287 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113287 /DB_XREF=gi:8505432 /DB_XREF=UI-R-BJ1-awe-b-02-0-UI.s1 /CLONE=UI-R-BJ1-awe-b-02-0-UI /FEA=EST /CNT=26 /TID=Rn.11796.2 /TIER=Stack /STK=9 /UG=Rn.11796 /UG_TITLE=Rattus norvegicus ryk mRNA for tyrosine kinase-related protein, partial cds BE113287 receptor-like tyrosine kinase Ryk 140585 NM_080402 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // not recorded /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0048843 // negative regulation of axon extension involved in axon guidance // not recorded /// 0048843 // negative regulation of axon extension involved in axon guidance // inferred from electronic annotation /// 0050919 // negative chemotaxis // not recorded /// 0050919 // negative chemotaxis // inferred from electronic annotation /// 0071679 // commissural neuron axon guidance // not recorded /// 0071679 // commissural neuron axon guidance // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0017147 // Wnt-protein binding // not recorded /// 0017147 // Wnt-protein binding // inferred from electronic annotation /// 0042813 // Wnt receptor activity // not recorded /// 0042813 // Wnt receptor activity // inferred from electronic annotation 1373029_at AI169377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169377 /DB_XREF=gi:3705685 /DB_XREF=EST215222 /CLONE=RKIBR49 /FEA=EST /CNT=23 /TID=Rn.19470.1 /TIER=Stack /STK=9 /UG=Rn.19470 /UG_TITLE=ESTs, Highly similar to SGN2_HUMAN SIGNALOSOME SUBUNIT 2 (SGN2) (COP9 COMPLEX SUBUNIT 2) (THYROID RECEPTOR INTERACTING PROTEIN 15) (TRIP15) (M.musculus) AI169377 COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis) Cops2 261736 NM_153297 0008283 // cell proliferation // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030182 // neuron differentiation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0008180 // signalosome // inferred from electronic annotation /// 0008180 // signalosome // not recorded 0003714 // transcription corepressor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // inferred from direct assay 1373030_at AJ225654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ225654 /DB_XREF=gi:4833483 /DB_XREF=RNJ225654 /CLONE=IRL901 /FEA=EST /CNT=19 /TID=Rn.13504.1 /TIER=Stack /STK=9 /UG=Rn.13504 /UG_TITLE=ESTs AJ225654 1373031_at BI275757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275757 /DB_XREF=gi:14919983 /DB_XREF=UI-R-CX0-bxg-c-09-0-UI.s1 /CLONE=UI-R-CX0-bxg-c-09-0-UI /FEA=EST /CNT=18 /TID=Rn.3965.2 /TIER=Stack /STK=9 /UG=Rn.3965 /UG_TITLE=ESTs, Highly similar to JC5105 stromal cell-derived factor 2 - mouse (M.musculus) BI275757 tripartite motif-containing 8 Trim8 688785 NM_001128083 0005634 // nucleus // not recorded /// 0016605 // PML body // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1373032_at AW251450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251450 /DB_XREF=gi:6595041 /DB_XREF=UI-R-BJ0-adm-d-01-0-UI.s1 /CLONE=UI-R-BJ0-adm-d-01-0-UI /FEA=EST /CNT=17 /TID=Rn.9453.1 /TIER=Stack /STK=9 /UG=Rn.9453 /UG_TITLE=ESTs AW251450 musculoskeletal, embryonic nuclear protein 1 Mustn1 290553 NM_181368 0030326 // embryonic limb morphogenesis // inferred from expression pattern /// 0042060 // wound healing // inferred from direct assay /// 0042246 // tissue regeneration // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from direct assay 1373033_at BI289505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289505 /DB_XREF=gi:14947147 /DB_XREF=UI-R-DK0-cfh-h-03-0-UI.s1 /CLONE=UI-R-DK0-cfh-h-03-0-UI /FEA=EST /CNT=16 /TID=Rn.15733.1 /TIER=Stack /STK=9 /UG=Rn.15733 /UG_TITLE=ESTs BI289505 SFT2 domain containing 1 Sft2d1 292305 NM_001008302 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1373034_at AI177128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177128 /DB_XREF=gi:3727766 /DB_XREF=EST220735 /CLONE=ROVCB23 /FEA=EST /CNT=21 /TID=Rn.12963.1 /TIER=Stack /STK=9 /UG=Rn.12963 /UG_TITLE=ESTs AI177128 tryptophan rich basic protein Wrb 288233 NM_199373 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1373035_at AI031032 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI031032 /DB_XREF=gi:3248858 /DB_XREF=UI-R-C0-jp-b-12-0-UI.s1 /CLONE=UI-R-C0-jp-b-12-0-UI /FEA=EST /CNT=19 /TID=Rn.3212.1 /TIER=Stack /STK=9 /UG=Rn.3212 /UG_TITLE=ESTs AI031032 1373036_at BF283621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283621 /DB_XREF=gi:11214691 /DB_XREF=EST448212 /CLONE=RGIEE69 /FEA=EST /CNT=18 /TID=Rn.3743.1 /TIER=Stack /STK=9 /UG=Rn.3743 /UG_TITLE=ESTs, Moderately similar to A54854 Ras GTPase activating protein-related protein (H.sapiens) BF283621 mCG114897-like LOC100363987 100363987 XR_085743 1373037_at BI279216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279216 /DB_XREF=gi:14926815 /DB_XREF=UI-R-DA0-byk-f-07-0-UI.s1 /CLONE=UI-R-DA0-byk-f-07-0-UI /FEA=EST /CNT=17 /TID=Rn.8609.1 /TIER=Stack /STK=9 /UG=Rn.8609 /UG_TITLE=ESTs, Weakly similar to UB5D RAT UBIQUITIN-CONJUGATING ENZYME E2-17 KD 4 (R.norvegicus) BI279216 ubiquitin-conjugating enzyme E2L 6 Ube2l6 295704 NM_001024755 0019941 // modification-dependent protein catabolic process // inferred from electronic annotation /// 0019941 // modification-dependent protein catabolic process // not recorded /// 0032020 // ISG15-protein conjugation // inferred from electronic annotation /// 0032020 // ISG15-protein conjugation // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // not recorded /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation /// 0042296 // ISG15 ligase activity // inferred from electronic annotation /// 0042296 // ISG15 ligase activity // not recorded 1373038_at AI145989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145989 /DB_XREF=gi:3667788 /DB_XREF=UI-R-BT0-pz-a-07-0-UI.s1 /CLONE=UI-R-BT0-pz-a-07-0-UI /FEA=EST /CNT=15 /TID=Rn.3620.1 /TIER=Stack /STK=9 /UG=Rn.3620 /UG_TITLE=ESTs AI145989 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 Mllt10 361285 NM_001012162 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1373039_at AI600081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600081 /DB_XREF=gi:4609129 /DB_XREF=EST251784 /CLONE=REMDQ91 /FEA=EST /CNT=15 /TID=Rn.7306.1 /TIER=Stack /STK=9 /UG=Rn.7306 /UG_TITLE=ESTs AI600081 1373040_at BI281752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281752 /DB_XREF=gi:14931823 /DB_XREF=UI-R-CU0s-cbs-b-02-0-UI.s1 /CLONE=UI-R-CU0s-cbs-b-02-0-UI /FEA=EST /CNT=15 /TID=Rn.1232.2 /TIER=Stack /STK=9 /UG=Rn.1232 /UG_TITLE=ESTs, Weakly similar to PRSC MOUSE 26S PROTEASOME REGULATORY SUBUNIT S12 (M.musculus) BI281752 eukaryotic translation initiation factor 3, subunit F Eif3f 293427 NM_001106292 0006413 // translational initiation // not recorded 0005829 // cytosol // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // not recorded 0003743 // translation initiation factor activity // not recorded /// 0005515 // protein binding // not recorded 1373041_at AI555535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555535 /DB_XREF=gi:4487898 /DB_XREF=UI-R-C2p-qr-a-05-0-UI.s1 /CLONE=UI-R-C2p-qr-a-05-0-UI /FEA=EST /CNT=15 /TID=Rn.17057.1 /TIER=Stack /STK=9 /UG=Rn.17057 /UG_TITLE=ESTs, Moderately similar to JC5822 NADH dehydrogenase (H.sapiens) AI555535 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3 Ndufb3 301427 NM_001106912 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0005747 // mitochondrial respiratory chain complex I // not recorded 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from electronic annotation 1373042_at AW434104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434104 /DB_XREF=gi:6965411 /DB_XREF=UI-R-BJ0p-afd-c-09-0-UI.s1 /CLONE=UI-R-BJ0p-afd-c-09-0-UI /FEA=EST /CNT=21 /TID=Rn.22589.1 /TIER=Stack /STK=9 /UG=Rn.22589 /UG_TITLE=ESTs, Weakly similar to T12468 hypothetical protein DKFZp564O123.1 (H.sapiens) AW434104 chromatin modifying protein 2A Chmp2a 365191 NM_001108906 0015031 // protein transport // inferred from electronic annotation 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded 1373043_at BI275923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275923 /DB_XREF=gi:14920334 /DB_XREF=UI-R-CX0-bxi-b-01-0-UI.s1 /CLONE=UI-R-CX0-bxi-b-01-0-UI /FEA=EST /CNT=19 /TID=Rn.1414.1 /TIER=Stack /STK=9 /UG=Rn.1414 /UG_TITLE=ESTs, Weakly similar to JC5105 stromal cell-derived factor 2 - mouse (M.musculus) BI275923 stromal cell-derived factor 2-like 1 Sdf2l1 680945 NM_001109433 0016020 // membrane // inferred from electronic annotation 1373044_at BI285403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285403 /DB_XREF=gi:14939005 /DB_XREF=UI-R-DB0-byz-f-09-0-UI.s1 /CLONE=UI-R-DB0-byz-f-09-0-UI /FEA=EST /CNT=16 /TID=Rn.3390.1 /TIER=Stack /STK=9 /UG=Rn.3390 /UG_TITLE=ESTs, Highly similar to GA17 protein (H.sapiens) BI285403 eukaryotic translation initiation factor 3, subunit M Eif3m 295975 NM_001168523 0005852 // eukaryotic translation initiation factor 3 complex // not recorded 0005515 // protein binding // not recorded 1373045_at AI235230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235230 /DB_XREF=gi:3828736 /DB_XREF=EST231792 /CLONE=ROVCP18 /FEA=EST /CNT=16 /TID=Rn.38930.1 /TIER=Stack /STK=9 /UG=Rn.38930 /UG_TITLE=ESTs, Moderately similar to TNP1_HUMAN TUMOR NECROSIS FACTOR, ALPHA-INDUCED PROTEIN 1, ENDOTHELIAL (H.sapiens) AI235230 potassium channel tetramerisation domain containing 13 Kctd13 293497 NM_198736 0006260 // DNA replication // inferred from direct assay /// 0006281 // DNA repair // traceable author statement /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0030036 // actin cytoskeleton organization // traceable author statement /// 0035024 // negative regulation of Rho protein signal transduction // not recorded /// 0043149 // stress fiber assembly // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0045449 // regulation of transcription // traceable author statement /// 0045740 // positive regulation of DNA replication // inferred from direct assay /// 0051260 // protein homooligomerization // traceable author statement /// 0051291 // protein heterooligomerization // traceable author statement 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031463 // Cul3-RING ubiquitin ligase complex // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0017049 // GTP-Rho binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1373046_at AW918273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918273 /DB_XREF=gi:8084045 /DB_XREF=EST349577 /CLONE=RGIEO82 /FEA=EST /CNT=16 /TID=Rn.16769.1 /TIER=Stack /STK=9 /UG=Rn.16769 /UG_TITLE=ESTs, Weakly similar to B39066 proline-rich protein 15 - rat (R.norvegicus) AW918273 DAZ associated protein 1 Dazap1 362836 NM_001025742 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005844 // polysome // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1373047_at BF284699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284699 /DB_XREF=gi:11215769 /DB_XREF=EST449290 /CLONE=RGIEV10 /FEA=EST /CNT=15 /TID=Rn.1388.1 /TIER=Stack /STK=9 /UG=Rn.1388 /UG_TITLE=ESTs BF284699 protein kinase C, iota Prkci 84006 NM_032059 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0007015 // actin filament organization // not recorded /// 0007015 // actin filament organization // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from mutant phenotype /// 0032869 // cellular response to insulin stimulus // not recorded /// 0035089 // establishment of apical/basal cell polarity // not recorded /// 0035089 // establishment of apical/basal cell polarity // inferred from electronic annotation /// 0042462 // eye photoreceptor cell development // not recorded /// 0042462 // eye photoreceptor cell development // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0045216 // cell-cell junction organization // not recorded /// 0046326 // positive regulation of glucose import // not recorded /// 0046326 // positive regulation of glucose import // inferred from electronic annotation /// 0048194 // Golgi vesicle budding // inferred from direct assay /// 0070555 // response to interleukin-1 // inferred from mutant phenotype /// 0090004 // positive regulation of establishment of protein localization in plasma membrane // not recorded /// 0090004 // positive regulation of establishment of protein localization in plasma membrane // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005923 // tight junction // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004697 // protein kinase C activity // not recorded /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005543 // phospholipid binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373048_at AI177051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177051 /DB_XREF=gi:3727689 /DB_XREF=EST220658 /CLONE=ROVCA23 /FEA=EST /CNT=15 /TID=Rn.3314.1 /TIER=Stack /STK=9 /UG=Rn.3314 /UG_TITLE=ESTs, Weakly similar to ACTB_HUMAN ACTIN, CYTOPLASMIC 1 (R.norvegicus) AI177051 actin-related protein 10 homolog (S. cerevisiae) Actr10 299121 NM_001009602 0007018 // microtubule-based movement // not recorded 0005869 // dynactin complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373049_at AI169619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169619 /DB_XREF=gi:3709659 /DB_XREF=EST215505 /CLONE=RKIBV32 /FEA=EST /CNT=15 /TID=Rn.17425.1 /TIER=Stack /STK=9 /UG=Rn.17425 /UG_TITLE=ESTs AI169619 similar to D1Ertd622e protein RGD1562136 501195 NM_001109086 1373050_at AW917731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917731 /DB_XREF=gi:8083489 /DB_XREF=EST349035 /CLONE=RGIEH33 /FEA=EST /CNT=15 /TID=Rn.24535.1 /TIER=Stack /STK=9 /UG=Rn.24535 /UG_TITLE=ESTs AW917731 1373051_at BM383988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383988 /DB_XREF=gi:18184041 /DB_XREF=UI-R-DM1-ckb-a-06-0-UI.s1 /CLONE=UI-R-DM1-ckb-a-06-0-UI /FEA=EST /CNT=14 /TID=Rn.7990.1 /TIER=Stack /STK=9 /UG=Rn.7990 /UG_TITLE=ESTs BM383988 LMBR1 domain containing 1 Lmbrd1 246046 NM_139189 0006810 // transport // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0031419 // cobalamin binding // inferred from electronic annotation 1373052_at BI275649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275649 /DB_XREF=gi:14919768 /DB_XREF=UI-R-CW0-bwm-a-09-0-UI.s1 /CLONE=UI-R-CW0-bwm-a-09-0-UI /FEA=EST /CNT=14 /TID=Rn.15024.1 /TIER=Stack /STK=9 /UG=Rn.15024 /UG_TITLE=ESTs, Weakly similar to A35422 phosducin, retinal (H.sapiens) BI275649 phosducin-like 3 Pdcl3 316348 NM_001025709 0006915 // apoptosis // inferred from electronic annotation /// 0044419 // interspecies interaction between organisms // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373053_at AI169620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169620 /DB_XREF=gi:3709660 /DB_XREF=EST215506 /CLONE=RKIBV33 /FEA=EST /CNT=14 /TID=Rn.25001.1 /TIER=Stack /STK=9 /UG=Rn.25001 /UG_TITLE=ESTs AI169620 1373054_at AA801076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA801076 /DB_XREF=gi:4131564 /DB_XREF=EST190573 /CLONE=ROVAA37 /FEA=EST /CNT=14 /TID=Rn.25182.1 /TIER=Stack /STK=9 /UG=Rn.25182 /UG_TITLE=ESTs AA801076 solute carrier family 44, member 1 Slc44a1 85254 NM_001033852 /// NM_053492 0006810 // transport // inferred from electronic annotation /// 0015871 // choline transport // not recorded /// 0055085 // transmembrane transport // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0015220 // choline transmembrane transporter activity // not recorded 1373055_at AI407547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407547 /DB_XREF=gi:4251051 /DB_XREF=EST235837 /CLONE=ROVDZ24 /FEA=EST /CNT=14 /TID=Rn.13039.1 /TIER=Stack /STK=9 /UG=Rn.13039 /UG_TITLE=ESTs AI407547 1373056_at AI409861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409861 /DB_XREF=gi:4253365 /DB_XREF=EST238154 /CLONE=RPLDM34 /FEA=EST /CNT=14 /TID=Rn.21479.1 /TIER=Stack /STK=9 /UG=Rn.21479 /UG_TITLE=ESTs AI409861 transmembrane emp24 protein transport domain containing 4 Tmed4 305502 NM_001107238 0006810 // transport // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded 1373057_at AI229142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229142 /DB_XREF=gi:3813029 /DB_XREF=EST225837 /CLONE=RBRDE64 /FEA=EST /CNT=14 /TID=Rn.7646.1 /TIER=Stack /STK=9 /UG=Rn.7646 /UG_TITLE=ESTs AI229142 1373058_at AI409051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409051 /DB_XREF=gi:4252555 /DB_XREF=EST237343 /CLONE=RKIDO89 /FEA=EST /CNT=23 /TID=Rn.17936.1 /TIER=Stack /STK=9 /UG=Rn.17936 /UG_TITLE=ESTs, Highly similar to T47140 hypothetical protein DKFZp761K1115.1 (H.sapiens) AI409051 transmembrane protein 30A Tmem30a 300857 NM_001004248 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1373059_at AA944355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944355 /DB_XREF=gi:3104271 /DB_XREF=EST199854 /CLONE=REMAF82 /FEA=EST /CNT=19 /TID=Rn.3722.1 /TIER=Stack /STK=9 /UG=Rn.3722 /UG_TITLE=ESTs AA944355 ankyrin repeat domain 13a Ankrd13a 360823 NM_001012148 1373060_at AI406281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406281 /DB_XREF=gi:4249785 /DB_XREF=EST234567 /CLONE=RBRDL88 /FEA=EST /CNT=17 /TID=Rn.4004.1 /TIER=Stack /STK=9 /UG=Rn.4004 /UG_TITLE=ESTs, Highly similar to T12468 hypothetical protein DKFZp564O123.1 (H.sapiens) AI406281 chromatin modifying protein 2B Chmp2b 363720 XM_001063932 /// XM_343995 0015031 // protein transport // inferred from electronic annotation 0005622 // intracellular // not recorded 0005515 // protein binding // not recorded /// 0019904 // protein domain specific binding // not recorded 1373061_at BE329329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329329 /DB_XREF=gi:9203105 /DB_XREF=hq39e05.x1 /CLONE=IMAGE:3121760 /FEA=EST /CNT=16 /TID=Rn.6998.1 /TIER=Stack /STK=9 /UG=Rn.6998 /UG_TITLE=ESTs, Highly similar to Y064_HUMAN HYPOTHETICAL PROTEIN KIAA0064 (H.sapiens) BE329329 sorting nexin 17 Snx17 298836 NM_001011981 0006810 // transport // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // not recorded /// 0007154 // cell communication // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation /// 0050750 // low-density lipoprotein receptor binding // inferred from electronic annotation /// 0050750 // low-density lipoprotein receptor binding // not recorded 1373062_at BM388650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388650 /DB_XREF=gi:18188703 /DB_XREF=UI-R-DZ0-ckm-l-19-0-UI.s1 /CLONE=UI-R-DZ0-ckm-l-19-0-UI /FEA=EST /CNT=16 /TID=Rn.20664.1 /TIER=Stack /STK=9 /UG=Rn.20664 /UG_TITLE=ESTs BM388650 1373063_at BI277000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277000 /DB_XREF=gi:14922454 /DB_XREF=UI-R-CY0-bxp-a-07-0-UI.s1 /CLONE=UI-R-CY0-bxp-a-07-0-UI /FEA=EST /CNT=16 /TID=Rn.8357.1 /TIER=Stack /STK=9 /UG=Rn.8357 /UG_TITLE=ESTs, Weakly similar to ubiquitin-conjugating enzyme E2D 2 (Rattus norvegicus) (R.norvegicus) BI277000 ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) Ube2k 289623 NM_001106006 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0034450 // ubiquitin-ubiquitin ligase activity // not recorded 1373064_at BM390416 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390416 /DB_XREF=gi:18190469 /DB_XREF=UI-R-CN1-cjq-n-11-0-UI.s1 /CLONE=UI-R-CN1-cjq-n-11-0-UI /FEA=EST /CNT=16 /TID=Rn.8092.1 /TIER=Stack /STK=9 /UG=Rn.8092 /UG_TITLE=ESTs, Weakly similar to T25890 hypothetical protein T19B4.4 - Caenorhabditis elegans (C.elegans) BM390416 DnaJ (Hsp40) homolog, subfamily C, member 15 Dnajc15 290370 NM_001106050 0005739 // mitochondrion // not recorded 0031072 // heat shock protein binding // inferred from electronic annotation 1373065_at AW916153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916153 /DB_XREF=gi:8081871 /DB_XREF=EST347457 /CLONE=RGIDI71 /FEA=EST /CNT=16 /TID=Rn.9310.1 /TIER=Stack /STK=9 /UG=Rn.9310 /UG_TITLE=ESTs AW916153 protein tyrosine phosphatase, non-receptor type 18 Ptpn18 301333 NM_001013111 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004726 // non-membrane spanning protein tyrosine phosphatase activity // not recorded /// 0004726 // non-membrane spanning protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1373066_at AI407797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407797 /DB_XREF=gi:4251301 /DB_XREF=EST236087 /CLONE=ROVEC49 /FEA=EST /CNT=15 /TID=Rn.40480.1 /TIER=Stack /STK=9 /UG=Rn.40480 /UG_TITLE=ESTs AI407797 1373067_at AI102738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102738 /DB_XREF=gi:3707434 /DB_XREF=EST212027 /CLONE=REMBR90 /FEA=EST /CNT=15 /TID=Rn.265.1 /TIER=Stack /STK=9 /UG=Rn.265 /UG_TITLE=ESTs AI102738 Catenin (cadherin associated protein), beta 1 Ctnnb1 84353 NM_053357 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000578 // embryonic axis specification // not recorded /// 0000904 // cell morphogenesis involved in differentiation // inferred from electronic annotation /// 0000904 // cell morphogenesis involved in differentiation // not recorded /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // not recorded /// 0001706 // endoderm formation // not recorded /// 0001706 // endoderm formation // inferred from electronic annotation /// 0001708 // cell fate specification // inferred from electronic annotation /// 0001708 // cell fate specification // not recorded /// 0001709 // cell fate determination // not recorded /// 0001709 // cell fate determination // inferred from electronic annotation /// 0001711 // endodermal cell fate commitment // inferred from electronic annotation /// 0001711 // endodermal cell fate commitment // not recorded /// 0001822 // kidney development // not recorded /// 0001889 // liver development // inferred from expression pattern /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0003337 // mesenchymal to epithelial transition involved in metanephros morphogenesis // not recorded /// 0003338 // metanephros morphogenesis // inferred from electronic annotation /// 0003338 // metanephros morphogenesis // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007398 // ectoderm development // inferred from electronic annotation /// 0007398 // ectoderm development // not recorded /// 0007403 // glial cell fate determination // inferred from electronic annotation /// 0007403 // glial cell fate determination // not recorded /// 0007494 // midgut development // inferred from expression pattern /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0009948 // anterior/posterior axis specification // inferred from electronic annotation /// 0009948 // anterior/posterior axis specification // not recorded /// 0009950 // dorsal/ventral axis specification // inferred from electronic annotation /// 0009950 // dorsal/ventral axis specification // not recorded /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // not recorded /// 0009987 // cellular process // inferred from electronic annotation /// 0009987 // cellular process // not recorded /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010628 // positive regulation of gene expression // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0010909 // positive regulation of heparan sulfate proteoglycan biosynthetic process // inferred from electronic annotation /// 0010909 // positive regulation of heparan sulfate proteoglycan biosynthetic process // not recorded /// 0014010 // Schwann cell proliferation // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // not recorded /// 0016337 // cell-cell adhesion // inferred from direct assay /// 0016337 // cell-cell adhesion // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // inferred from sequence or structural similarity /// 0022009 // central nervous system vasculogenesis // not recorded /// 0022405 // hair cycle process // not recorded /// 0022405 // hair cycle process // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030217 // T cell differentiation // not recorded /// 0030217 // T cell differentiation // inferred from electronic annotation /// 0030316 // osteoclast differentiation // not recorded /// 0030316 // osteoclast differentiation // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030539 // male genitalia development // not recorded /// 0030856 // regulation of epithelial cell differentiation // not recorded /// 0030856 // regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030858 // positive regulation of epithelial cell differentiation // not recorded /// 0030858 // positive regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0030997 // regulation of centriole-centriole cohesion // inferred from electronic annotation /// 0030997 // regulation of centriole-centriole cohesion // not recorded /// 0031016 // pancreas development // inferred from electronic annotation /// 0031016 // pancreas development // not recorded /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // not recorded /// 0032331 // negative regulation of chondrocyte differentiation // inferred from electronic annotation /// 0032331 // negative regulation of chondrocyte differentiation // not recorded /// 0032355 // response to estradiol stimulus // not recorded /// 0033077 // T cell differentiation in thymus // inferred from electronic annotation /// 0033077 // T cell differentiation in thymus // not recorded /// 0034097 // response to cytokine stimulus // inferred from direct assay /// 0034333 // adherens junction assembly // not recorded /// 0034394 // protein localization at cell surface // not recorded /// 0034613 // cellular protein localization // inferred from electronic annotation /// 0034613 // cellular protein localization // not recorded /// 0035050 // embryonic heart tube development // inferred from electronic annotation /// 0035050 // embryonic heart tube development // not recorded /// 0035112 // genitalia morphogenesis // inferred from electronic annotation /// 0035112 // genitalia morphogenesis // not recorded /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0035117 // embryonic arm morphogenesis // inferred from electronic annotation /// 0035117 // embryonic arm morphogenesis // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042129 // regulation of T cell proliferation // inferred from electronic annotation /// 0042129 // regulation of T cell proliferation // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from expression pattern /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0043587 // tongue morphogenesis // not recorded /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0045445 // myoblast differentiation // inferred from expression pattern /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045453 // bone resorption // inferred from electronic annotation /// 0045453 // bone resorption // not recorded /// 0045595 // regulation of cell differentiation // not recorded /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045603 // positive regulation of endothelial cell differentiation // inferred from electronic annotation /// 0045603 // positive regulation of endothelial cell differentiation // not recorded /// 0045667 // regulation of osteoblast differentiation // not recorded /// 0045667 // regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045670 // regulation of osteoclast differentiation // not recorded /// 0045670 // regulation of osteoclast differentiation // inferred from electronic annotation /// 0045671 // negative regulation of osteoclast differentiation // inferred from electronic annotation /// 0045671 // negative regulation of osteoclast differentiation // not recorded /// 0045743 // positive regulation of fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0045743 // positive regulation of fibroblast growth factor receptor signaling pathway // not recorded /// 0045768 // positive regulation of anti-apoptosis // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded /// 0048489 // synaptic vesicle transport // inferred from electronic annotation /// 0048489 // synaptic vesicle transport // not recorded /// 0048513 // organ development // not recorded /// 0048513 // organ development // inferred from electronic annotation /// 0048538 // thymus development // inferred from electronic annotation /// 0048538 // thymus development // not recorded /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // not recorded /// 0048599 // oocyte development // not recorded /// 0048617 // embryonic foregut morphogenesis // inferred from electronic annotation /// 0048617 // embryonic foregut morphogenesis // not recorded /// 0048660 // regulation of smooth muscle cell proliferation // not recorded /// 0050808 // synapse organization // inferred from electronic annotation /// 0050808 // synapse organization // not recorded /// 0050909 // sensory perception of taste // not recorded /// 0051145 // smooth muscle cell differentiation // not recorded /// 0051291 // protein heterooligomerization // inferred from physical interaction /// 0060066 // fallopian tube development // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060173 // limb development // not recorded /// 0060439 // trachea morphogenesis // not recorded /// 0060439 // trachea morphogenesis // inferred from electronic annotation /// 0060440 // trachea formation // inferred from electronic annotation /// 0060440 // trachea formation // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // inferred from electronic annotation /// 0060479 // lung cell differentiation // inferred from electronic annotation /// 0060479 // lung cell differentiation // not recorded /// 0060484 // lung-associated mesenchyme development // inferred from electronic annotation /// 0060484 // lung-associated mesenchyme development // not recorded /// 0060492 // lung induction // inferred from electronic annotation /// 0060492 // lung induction // not recorded /// 0060742 // epithelial cell differentiation involved in prostate gland development // inferred from electronic annotation /// 0060742 // epithelial cell differentiation involved in prostate gland development // not recorded /// 0060769 // positive regulation of epithelial cell proliferation involved in prostate gland development // inferred from electronic annotation /// 0060769 // positive regulation of epithelial cell proliferation involved in prostate gland development // not recorded /// 0060789 // hair follicle placode formation // inferred from electronic annotation /// 0060789 // hair follicle placode formation // not recorded /// 0060916 // mesenchymal cell proliferation involved in lung development // inferred from electronic annotation /// 0060916 // mesenchymal cell proliferation involved in lung development // not recorded /// 0061047 // positive regulation of branching involved in lung morphogenesis // inferred from electronic annotation /// 0061047 // positive regulation of branching involved in lung morphogenesis // not recorded /// 0061154 // endothelial tube morphogenesis // not recorded /// 0070602 // regulation of centromeric sister chromatid cohesion // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // not recorded /// 0071407 // cellular response to organic cyclic substance // not recorded /// 0071681 // cellular response to indole-3-methanol // inferred from electronic annotation /// 0071681 // cellular response to indole-3-methanol // not recorded /// 0072001 // renal system development // inferred from electronic annotation /// 0072001 // renal system development // not recorded /// 0072033 // renal vesicle formation // not recorded /// 0072053 // renal inner medulla development // inferred from electronic annotation /// 0072053 // renal inner medulla development // not recorded /// 0072054 // renal outer medulla development // inferred from electronic annotation /// 0072054 // renal outer medulla development // not recorded /// 0072079 // nephron tubule formation // not recorded /// 0090279 // regulation of calcium ion import // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0005913 // cell-cell adherens junction // not recorded /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005916 // fascia adherens // inferred from electronic annotation /// 0005916 // fascia adherens // not recorded /// 0005924 // cell-substrate adherens junction // not recorded /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016328 // lateral plasma membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // not recorded /// 0016342 // catenin complex // inferred from electronic annotation /// 0016342 // catenin complex // not recorded /// 0030018 // Z disc // inferred from electronic annotation /// 0030018 // Z disc // not recorded /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030054 // cell junction // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030877 // beta-catenin destruction complex // inferred from electronic annotation /// 0031253 // cell projection membrane // not recorded /// 0031253 // cell projection membrane // inferred from electronic annotation /// 0031528 // microvillus membrane // inferred from electronic annotation /// 0031528 // microvillus membrane // not recorded /// 0032993 // protein-DNA complex // inferred from electronic annotation /// 0032993 // protein-DNA complex // not recorded /// 0034747 // Axin-APC-beta-catenin-GSK3B complex // inferred from electronic annotation /// 0034747 // Axin-APC-beta-catenin-GSK3B complex // not recorded /// 0043005 // neuron projection // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0043296 // apical junction complex // inferred from electronic annotation /// 0043296 // apical junction complex // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded /// 0045202 // synapse // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0070369 // beta-catenin-TCF7L2 complex // inferred from electronic annotation /// 0070369 // beta-catenin-TCF7L2 complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003704 // specific RNA polymerase II transcription factor activity // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019900 // kinase binding // inferred from electronic annotation /// 0019900 // kinase binding // not recorded /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // not recorded /// 0030331 // estrogen receptor binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction /// 0035257 // nuclear hormone receptor binding // not recorded /// 0045294 // alpha-catenin binding // inferred from electronic annotation /// 0045294 // alpha-catenin binding // not recorded /// 0045296 // cadherin binding // inferred from direct assay /// 0045296 // cadherin binding // inferred from physical interaction /// 0045296 // cadherin binding // not recorded /// 0045296 // cadherin binding // inferred from electronic annotation /// 0046332 // SMAD binding // not recorded /// 0046332 // SMAD binding // inferred from electronic annotation /// 0070411 // I-SMAD binding // inferred from electronic annotation /// 0070411 // I-SMAD binding // not recorded /// 0070412 // R-SMAD binding // not recorded /// 0070491 // transcription repressor binding // inferred from electronic annotation /// 0070491 // transcription repressor binding // not recorded 1373068_at AI236977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236977 /DB_XREF=gi:3830483 /DB_XREF=EST233539 /CLONE=ROVDN16 /FEA=EST /CNT=14 /TID=Rn.8306.1 /TIER=Stack /STK=9 /UG=Rn.8306 /UG_TITLE=ESTs, Weakly similar to IFR1 RAT INTERFERON-RELATED DEVELOPMENTAL REGULATOR 1 (R.norvegicus) AI236977 interferon-related developmental regulator 2 Ifrd2 300994 NM_001047871 0005488 // binding // inferred from electronic annotation 1373069_at BG378230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378230 /DB_XREF=gi:13302702 /DB_XREF=UI-R-CV1-bvp-e-11-0-UI.s1 /CLONE=UI-R-CV1-bvp-e-11-0-UI /FEA=EST /CNT=14 /TID=Rn.9312.1 /TIER=Stack /STK=9 /UG=Rn.9312 /UG_TITLE=ESTs, Weakly similar to T33116 probable phosphoesterase (EC 3.1.-.-) B0511.8 - Caenorhabditis elegans (C.elegans) BG378230 mitochondrial ribosomal protein S30 Mrps30 294767 NM_001106412 0006412 // translation // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1373070_at AI406379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406379 /DB_XREF=gi:4249883 /DB_XREF=EST234665 /CLONE=RBRDP16 /FEA=EST /CNT=14 /TID=Rn.24966.1 /TIER=Stack /STK=9 /UG=Rn.24966 /UG_TITLE=ESTs AI406379 1373071_at AI103101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103101 /DB_XREF=gi:3707687 /DB_XREF=EST212390 /CLONE=REMBX28 /FEA=EST /CNT=14 /TID=Rn.8663.1 /TIER=Stack /STK=9 /UG=Rn.8663 /UG_TITLE=ESTs, Highly similar to T00702 hypothetical protein F25965_1 (H.sapiens) AI103101 lin-37 homolog (C. elegans) Lin37 292787 NM_001106245 0005515 // protein binding // not recorded 1373072_at AI170552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170552 /DB_XREF=gi:3710592 /DB_XREF=EST216483 /CLONE=RLUCQ61 /FEA=EST /CNT=14 /TID=Rn.1897.1 /TIER=Stack /STK=9 /UG=Rn.1897 /UG_TITLE=ESTs AI170552 1373073_at BF282816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282816 /DB_XREF=gi:11213886 /DB_XREF=EST447407 /CLONE=RGIDT55 /FEA=EST /CNT=13 /TID=Rn.19437.1 /TIER=Stack /STK=9 /UG=Rn.19437 /UG_TITLE=ESTs, Weakly similar to PGS1 RAT BONECARTILAGE PROTEOGLYCAN I PRECURSOR (R.norvegicus) BF282816 protein phosphatase 1, regulatory (inhibitor) subunit 7 Ppp1r7 301618 NM_001009825 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373074_at AI171367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171367 /DB_XREF=gi:3711407 /DB_XREF=EST217323 /CLONE=RMUBJ79 /FEA=EST /CNT=13 /TID=Rn.16742.1 /TIER=Stack /STK=9 /UG=Rn.16742 /UG_TITLE=ESTs AI171367 similar to RIKEN cDNA 2700002I20 RGD1307279 307210 NM_001008343 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 1373075_at BM390707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390707 /DB_XREF=gi:18190760 /DB_XREF=UI-R-CN1-cjr-d-03-0-UI.s1 /CLONE=UI-R-CN1-cjr-d-03-0-UI /FEA=EST /CNT=13 /TID=Rn.1331.1 /TIER=Stack /STK=9 /UG=Rn.1331 /UG_TITLE=ESTs BM390707 similar to Cell division protein kinase 8 (Protein kinase K35) RGD1560888 498140 NM_001109061 1373076_at AI411577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411577 /DB_XREF=gi:4255081 /DB_XREF=EST239871 /CLONE=ROVET21 /FEA=EST /CNT=13 /TID=Rn.9033.1 /TIER=Stack /STK=9 /UG=Rn.9033 /UG_TITLE=ESTs AI411577 1373077_at BI285902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285902 /DB_XREF=gi:14940015 /DB_XREF=UI-R-CX0s-ccp-b-10-0-UI.s1 /CLONE=UI-R-CX0s-ccp-b-10-0-UI /FEA=EST /CNT=13 /TID=Rn.4159.1 /TIER=Stack /STK=9 /UG=Rn.4159 /UG_TITLE=ESTs BI285902 CDKN2A interacting protein N-terminal like Cdkn2aipnl 287278 NM_001008278 1373078_at AI409271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409271 /DB_XREF=gi:4252775 /DB_XREF=EST237563 /CLONE=ROVEM38 /FEA=EST /CNT=13 /TID=Rn.8222.1 /TIER=Stack /STK=9 /UG=Rn.8222 /UG_TITLE=ESTs AI409271 adenosylhomocysteinase-like 2 Ahcyl2 312192 NM_001173510 /// XM_001062287 /// XM_231564 0006730 // one-carbon metabolic process // inferred from electronic annotation 0004013 // adenosylhomocysteinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1373079_at BI296427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296427 /DB_XREF=gi:14960840 /DB_XREF=UI-R-CV2-cgr-a-11-0-UI.s1 /CLONE=UI-R-CV2-cgr-a-11-0-UI /FEA=EST /CNT=13 /TID=Rn.8272.1 /TIER=Stack /STK=9 /UG=Rn.8272 /UG_TITLE=ESTs BI296427 1373080_at BI284422 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284422 /DB_XREF=gi:14937087 /DB_XREF=UI-R-CX0s-cco-h-10-0-UI.s1 /CLONE=UI-R-CX0s-cco-h-10-0-UI /FEA=EST /CNT=13 /TID=Rn.3455.1 /TIER=Stack /STK=9 /UG=Rn.3455 /UG_TITLE=ESTs, Highly similar to PAP_HUMAN Poly(A) polymerase alpha (PAP) (Polynucleotide adenylyltransferase alpha) (Fragment) (H.sapiens) BI284422 poly (A) polymerase alpha Papola 314417 NM_001108056 0006350 // transcription // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0031123 // RNA 3'-end processing // inferred from electronic annotation /// 0043631 // RNA polyadenylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0004652 // polynucleotide adenylyltransferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1373081_at AI105000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105000 /DB_XREF=gi:3709204 /DB_XREF=EST214289 /CLONE=RHECM31 /FEA=EST /CNT=13 /TID=Rn.13017.2 /TIER=Stack /STK=9 /UG=Rn.13017 /LL=117542 /UG_GENE=Baiap2 /UG_TITLE=brain-specific angiogenesis inhibitor 1-associated protein 2 AI105000 1373082_at AA893743 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893743 /DB_XREF=gi:3020622 /DB_XREF=EST197546 /CLONE=RPLAK14 /FEA=EST /CNT=13 /TID=Rn.8002.1 /TIER=Stack /STK=9 /UG=Rn.8002 /UG_TITLE=ESTs AA893743 1373083_at AW915681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915681 /DB_XREF=gi:8081386 /DB_XREF=EST346985 /CLONE=RGICZ34 /FEA=EST /CNT=13 /TID=Rn.7335.1 /TIER=Stack /STK=9 /UG=Rn.7335 /UG_TITLE=ESTs AW915681 phosphatidic acid phosphatase type 2 domain containing 2 Ppapdc2 619549 NM_001034854 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1373084_at BI300912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300912 /DB_XREF=gi:14977192 /DB_XREF=UI-R-CV2-cil-d-08-0-UI.s1 /CLONE=UI-R-CV2-cil-d-08-0-UI /FEA=EST /CNT=13 /TID=Rn.13842.1 /TIER=Stack /STK=9 /UG=Rn.13842 /UG_TITLE=ESTs BI300912 WD repeat domain 20a Wdr20a 314453 NM_001100894 1373085_at BI282197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282197 /DB_XREF=gi:14932722 /DB_XREF=UI-R-CU0s-cbx-g-07-0-UI.s1 /CLONE=UI-R-CU0s-cbx-g-07-0-UI /FEA=EST /CNT=13 /TID=Rn.8624.1 /TIER=Stack /STK=9 /UG=Rn.8624 /UG_TITLE=ESTs, Weakly similar to CARBONYL REDUCTASE (R.norvegicus) BI282197 carbonyl reductase 3 Cbr3 304078 NM_001107110 0008152 // metabolic process // inferred from electronic annotation /// 0042376 // phylloquinone catabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000253 // 3-keto sterol reductase activity // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004090 // carbonyl reductase (NADPH) activity // inferred from direct assay /// 0004090 // carbonyl reductase (NADPH) activity // not recorded /// 0004090 // carbonyl reductase (NADPH) activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0070402 // NADPH binding // inferred from electronic annotation /// 0070402 // NADPH binding // not recorded 1373086_at AI102818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102818 /DB_XREF=gi:4134120 /DB_XREF=EST212107 /CLONE=REMBT26 /FEA=EST /CNT=13 /TID=Rn.4193.1 /TIER=Stack /STK=9 /UG=Rn.4193 /UG_TITLE=ESTs AI102818 PDX1 C-terminal inhibiting factor 1 Pcif1 362269 NM_001108605 0005515 // protein binding // inferred from electronic annotation 1373087_at AI175452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175452 /DB_XREF=gi:4134796 /DB_XREF=EST219000 /CLONE=RMUCN65 /FEA=EST /CNT=13 /TID=Rn.7636.1 /TIER=Stack /STK=9 /UG=Rn.7636 /UG_TITLE=ESTs AI175452 1373088_at BI295811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295811 /DB_XREF=gi:14959632 /DB_XREF=UI-R-DK0-cfa-h-09-0-UI.s1 /CLONE=UI-R-DK0-cfa-h-09-0-UI /FEA=EST /CNT=13 /TID=Rn.4332.1 /TIER=Stack /STK=9 /UG=Rn.4332 /UG_TITLE=ESTs BI295811 1373089_at AI010270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010270 /DB_XREF=gi:4133213 /DB_XREF=EST204721 /CLONE=RLUBW21 /FEA=EST /CNT=13 /TID=Rn.18009.1 /TIER=Stack /STK=9 /UG=Rn.18009 /UG_TITLE=ESTs, Moderately similar to CAD1_RAT EPITHELIAL-CADHERIN PRECURSOR (E-CADHERIN) (UVOMORULIN) (CADHERIN-1) (R.norvegicus) AI010270 cadherin 3 Cdh3 116777 NM_053938 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0042060 // wound healing // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1373090_at AI230697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230697 /DB_XREF=gi:3814584 /DB_XREF=EST227392 /CLONE=REMDA13 /FEA=EST /CNT=27 /TID=Rn.25091.1 /TIER=Stack /STK=9 /UG=Rn.25091 /UG_TITLE=ESTs AI230697 signal sequence receptor, alpha Ssr1 361233 NM_001008891 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1373091_at AI102576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102576 /DB_XREF=gi:3707316 /DB_XREF=EST211865 /CLONE=REMBP47 /FEA=EST /CNT=19 /TID=Rn.7105.1 /TIER=Stack /STK=9 /UG=Rn.7105 /UG_TITLE=ESTs AI102576 pleiomorphic adenoma gene-like 2 Plagl2 296281 NM_001106528 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1373092_at BE109587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109587 /DB_XREF=gi:8501692 /DB_XREF=UI-R-BJ1-avp-h-04-0-UI.s1 /CLONE=UI-R-BJ1-avp-h-04-0-UI /FEA=EST /CNT=19 /TID=Rn.8191.1 /TIER=Stack /STK=9 /UG=Rn.8191 /UG_TITLE=ESTs BE109587 1373093_at AI169756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169756 /DB_XREF=gi:3709796 /DB_XREF=EST215655 /CLONE=RLIAS86 /FEA=EST /CNT=17 /TID=Rn.10581.1 /TIER=Stack /STK=9 /UG=Rn.10581 /UG_TITLE=ESTs, Highly similar to G33 RAT GENE 33 POLYPEPTIDE (R.norvegicus) AI169756 ERBB receptor feedback inhibitor 1 Errfi1 313729 NM_001014071 0007175 // negative regulation of epidermal growth factor receptor activity // inferred from direct assay /// 0007175 // negative regulation of epidermal growth factor receptor activity // not recorded /// 0007175 // negative regulation of epidermal growth factor receptor activity // inferred from sequence or structural similarity /// 0007175 // negative regulation of epidermal growth factor receptor activity // inferred from electronic annotation /// 0031953 // negative regulation of protein autophosphorylation // not recorded /// 0031953 // negative regulation of protein autophosphorylation // inferred from sequence or structural similarity /// 0031953 // negative regulation of protein autophosphorylation // inferred from electronic annotation /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // not recorded /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // inferred from electronic annotation /// 0043589 // skin morphogenesis // not recorded /// 0043589 // skin morphogenesis // inferred from sequence or structural similarity /// 0043589 // skin morphogenesis // inferred from electronic annotation /// 0045616 // regulation of keratinocyte differentiation // not recorded /// 0045616 // regulation of keratinocyte differentiation // inferred from sequence or structural similarity /// 0045616 // regulation of keratinocyte differentiation // inferred from electronic annotation /// 0048286 // lung alveolus development // not recorded /// 0048286 // lung alveolus development // inferred from sequence or structural similarity /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0050732 // negative regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050732 // negative regulation of peptidyl-tyrosine phosphorylation // inferred from sequence or structural similarity /// 0060426 // lung vasculature development // not recorded /// 0060426 // lung vasculature development // inferred from sequence or structural similarity /// 0060426 // lung vasculature development // inferred from electronic annotation /// 0060428 // lung epithelium development // not recorded /// 0060428 // lung epithelium development // inferred from sequence or structural similarity /// 0060428 // lung epithelium development // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031234 // extrinsic to internal side of plasma membrane // not recorded /// 0031234 // extrinsic to internal side of plasma membrane // inferred from sequence or structural similarity /// 0031234 // extrinsic to internal side of plasma membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019900 // kinase binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded 1373094_at AW917124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917124 /DB_XREF=gi:8082866 /DB_XREF=EST348428 /CLONE=RGIDZ54 /FEA=EST /CNT=17 /TID=Rn.2235.1 /TIER=Stack /STK=9 /UG=Rn.2235 /UG_TITLE=ESTs, Highly similar to S27958 transcription factor BTF2 62K chain (H.sapiens) AW917124 general transcription factor IIH, polypeptide 1 Gtf2h1 361580 NM_001108485 0000718 // nucleotide-excision repair, DNA damage removal // not recorded /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005675 // holo TFIIH complex // not recorded 0004672 // protein kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // not recorded 1373095_at AI408081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408081 /DB_XREF=gi:4251585 /DB_XREF=EST236371 /CLONE=ROVEF19 /FEA=EST /CNT=16 /TID=Rn.22239.1 /TIER=Stack /STK=9 /UG=Rn.22239 /UG_TITLE=ESTs AI408081 similar to mKIAA0317 protein RGD1307597 299197 NM_001106744 0006464 // protein modification process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1373096_at AI407406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407406 /DB_XREF=gi:4250910 /DB_XREF=EST235695 /CLONE=ROVED57 /FEA=EST /CNT=15 /TID=Rn.14756.1 /TIER=Stack /STK=9 /UG=Rn.14756 /UG_TITLE=ESTs, Weakly similar to S67026 probable membrane protein YOR141c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AI407406 0005515 // protein binding // inferred from electronic annotation 1373097_at BF282125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282125 /DB_XREF=gi:11213195 /DB_XREF=EST446716 /CLONE=RGIDC33 /FEA=EST /CNT=14 /TID=Rn.19370.1 /TIER=Stack /STK=9 /UG=Rn.19370 /UG_TITLE=ESTs BF282125 excision repair cross-complementing rodent repair deficiency, complementation group 6 Ercc6 306274 NM_001107296 0000303 // response to superoxide // not recorded /// 0006281 // DNA repair // not recorded /// 0006283 // transcription-coupled nucleotide-excision repair // not recorded /// 0006284 // base-excision repair // not recorded /// 0006290 // pyrimidine dimer repair // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0006979 // response to oxidative stress // not recorded /// 0007256 // activation of JNKK activity // not recorded /// 0007257 // activation of JUN kinase activity // not recorded /// 0008630 // DNA damage response, signal transduction resulting in induction of apoptosis // not recorded /// 0009411 // response to UV // not recorded /// 0009636 // response to toxin // not recorded /// 0010165 // response to X-ray // not recorded /// 0010224 // response to UV-B // not recorded /// 0010332 // response to gamma radiation // not recorded /// 0032786 // positive regulation of RNA elongation // not recorded /// 0045494 // photoreceptor cell maintenance // not recorded 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0008023 // transcription elongation factor complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003678 // DNA helicase activity // not recorded /// 0003682 // chromatin binding // not recorded /// 0003711 // transcription elongation regulator activity // not recorded /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0032403 // protein complex binding // not recorded /// 0047485 // protein N-terminus binding // not recorded 1373098_at BF394321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394321 /DB_XREF=gi:11379185 /DB_XREF=UI-R-CA0-bgr-e-09-0-UI.s1 /CLONE=UI-R-CA0-bgr-e-09-0-UI /FEA=EST /CNT=14 /TID=Rn.33742.1 /TIER=Stack /STK=9 /UG=Rn.33742 /UG_TITLE=ESTs, Moderately similar to BCAS_HUMAN BREAST CARCINOMA AMPLIFIED SEQUENCE 1 (NOVEL AMPLIFIED IN BREAST CANCER 1) (AMPLIFIED AND OVEREXPRESSED IN BREAST CANCER) (H.sapiens) BF394321 breast carcinoma amplified sequence 1 Bcas1 246755 NM_145670 0005737 // cytoplasm // inferred from electronic annotation /// 0019717 // synaptosome // inferred from expression pattern 0005515 // protein binding // not recorded 1373099_at BI284221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284221 /DB_XREF=gi:14936707 /DB_XREF=UI-R-CX0s-ccn-f-05-0-UI.s1 /CLONE=UI-R-CX0s-ccn-f-05-0-UI /FEA=EST /CNT=14 /TID=Rn.1520.1 /TIER=Stack /STK=9 /UG=Rn.1520 /UG_TITLE=ESTs BI284221 phosphatidylinositol glycan anchor biosynthesis, class S Pigs 303277 NM_001006602 0006506 // GPI anchor biosynthetic process // inferred from electronic annotation /// 0016255 // attachment of GPI anchor to protein // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003923 // GPI-anchor transamidase activity // inferred from electronic annotation /// 0003923 // GPI-anchor transamidase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373100_at BI288811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288811 /DB_XREF=gi:14945763 /DB_XREF=UI-R-DK0-cdf-c-03-0-UI.s1 /CLONE=UI-R-DK0-cdf-c-03-0-UI /FEA=EST /CNT=14 /TID=Rn.30992.1 /TIER=Stack /STK=9 /UG=Rn.30992 /UG_TITLE=ESTs BI288811 similar to RIKEN cDNA 2900010J23 LOC499779 499779 XM_001079909 /// XM_575112 1373101_at AI236743 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236743 /DB_XREF=gi:4136234 /DB_XREF=EST233305 /CLONE=ROVDK06 /FEA=EST /CNT=14 /TID=Rn.17350.1 /TIER=Stack /STK=9 /UG=Rn.17350 /UG_TITLE=ESTs, Weakly similar to T13411 hypothetical protein EG:133E12.3 - fruit fly (D.melanogaster) AI236743 phosphatidylinositol glycan anchor biosynthesis, class K Pigk 295543 NM_001011953 0006508 // proteolysis // inferred from electronic annotation /// 0016255 // attachment of GPI anchor to protein // not recorded 0042765 // GPI-anchor transamidase complex // not recorded /// 0042765 // GPI-anchor transamidase complex // inferred from sequence or structural similarity 0003923 // GPI-anchor transamidase activity // not recorded /// 0003923 // GPI-anchor transamidase activity // inferred from sequence or structural similarity /// 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373102_at BI282750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282750 /DB_XREF=gi:14933828 /DB_XREF=UI-R-CW0s-cce-g-04-0-UI.s1 /CLONE=UI-R-CW0s-cce-g-04-0-UI /FEA=EST /CNT=13 /TID=Rn.23806.1 /TIER=Stack /STK=9 /UG=Rn.23806 /UG_TITLE=ESTs BI282750 cadherin 13 Cdh13 192248 NM_138889 0000278 // mitotic cell cycle // inferred from expression pattern /// 0001558 // regulation of cell growth // inferred from mutant phenotype /// 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0001954 // positive regulation of cell-matrix adhesion // inferred from electronic annotation /// 0001954 // positive regulation of cell-matrix adhesion // not recorded /// 0002040 // sprouting angiogenesis // inferred from electronic annotation /// 0002040 // sprouting angiogenesis // not recorded /// 0007155 // cell adhesion // non-traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // not recorded /// 0007162 // negative regulation of cell adhesion // inferred from electronic annotation /// 0007162 // negative regulation of cell adhesion // not recorded /// 0007266 // Rho protein signal transduction // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0016337 // cell-cell adhesion // traceable author statement /// 0016339 // calcium-dependent cell-cell adhesion // inferred from electronic annotation /// 0016339 // calcium-dependent cell-cell adhesion // not recorded /// 0016601 // Rac protein signal transduction // inferred from electronic annotation /// 0016601 // Rac protein signal transduction // not recorded /// 0030032 // lamellipodium assembly // inferred from electronic annotation /// 0030032 // lamellipodium assembly // not recorded /// 0030100 // regulation of endocytosis // inferred from electronic annotation /// 0030100 // regulation of endocytosis // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0042058 // regulation of epidermal growth factor receptor signaling pathway // inferred from electronic annotation /// 0042058 // regulation of epidermal growth factor receptor signaling pathway // not recorded /// 0043542 // endothelial cell migration // inferred from electronic annotation /// 0043542 // endothelial cell migration // not recorded /// 0043616 // keratinocyte proliferation // inferred from electronic annotation /// 0043616 // keratinocyte proliferation // not recorded /// 0045885 // positive regulation of survival gene product expression // inferred from electronic annotation /// 0045885 // positive regulation of survival gene product expression // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // not recorded /// 0050850 // positive regulation of calcium-mediated signaling // inferred from electronic annotation /// 0050850 // positive regulation of calcium-mediated signaling // not recorded /// 0050927 // positive regulation of positive chemotaxis // inferred from electronic annotation /// 0050927 // positive regulation of positive chemotaxis // not recorded /// 0051668 // localization within membrane // inferred from electronic annotation /// 0051668 // localization within membrane // not recorded /// 0055096 // low-density lipoprotein mediated signaling // inferred from electronic annotation /// 0055096 // low-density lipoprotein mediated signaling // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030169 // low-density lipoprotein binding // inferred from electronic annotation /// 0030169 // low-density lipoprotein binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0045296 // cadherin binding // inferred from electronic annotation /// 0045296 // cadherin binding // not recorded /// 0055100 // adiponectin binding // inferred from electronic annotation /// 0055100 // adiponectin binding // not recorded 1373103_at BM386922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386922 /DB_XREF=gi:18186975 /DB_XREF=UI-R-CN1-cjh-n-06-0-UI.s1 /CLONE=UI-R-CN1-cjh-n-06-0-UI /FEA=EST /CNT=13 /TID=Rn.15251.1 /TIER=Stack /STK=9 /UG=Rn.15251 /UG_TITLE=ESTs, Weakly similar to metastasis associated 1 (Rattus norvegicus) (R.norvegicus) BM386922 metastasis associated 1 family, member 2 Mta2 361724 NM_001100740 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0000118 // histone deacetylase complex // not recorded /// 0000118 // histone deacetylase complex // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0016581 // NuRD complex // not recorded /// 0016581 // NuRD complex // inferred from electronic annotation /// 0016585 // chromatin remodeling complex // not recorded /// 0016585 // chromatin remodeling complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004407 // histone deacetylase activity // not recorded /// 0004407 // histone deacetylase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1373104_at BF281872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281872 /DB_XREF=gi:11212942 /DB_XREF=EST446463 /CLONE=RGIBH49 /FEA=EST /CNT=13 /TID=Rn.13765.1 /TIER=Stack /STK=9 /UG=Rn.13765 /UG_TITLE=ESTs BF281872 cytospin A Cytsa 361828 NM_001039455 0007049 // cell cycle // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 1373105_at BG375429 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375429 /DB_XREF=gi:13299901 /DB_XREF=UI-R-CV1-btb-c-08-0-UI.s1 /CLONE=UI-R-CV1-btb-c-08-0-UI /FEA=EST /CNT=13 /TID=Rn.36264.1 /TIER=Stack /STK=9 /UG=Rn.36264 /UG_TITLE=ESTs, Highly similar to putative T1ST2 receptor binding protein precursor (M.musculus) BG375429 transmembrane emp24 protein transport domain containing 1 Tmed1 315461 NM_001013432 0006810 // transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373106_at AI178069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178069 /DB_XREF=gi:3728707 /DB_XREF=EST221728 /CLONE=RPLCK88 /FEA=EST /CNT=13 /TID=Rn.35019.1 /TIER=Stack /STK=9 /UG=Rn.35019 /UG_TITLE=ESTs AI178069 zinc finger protein 36, C3H type-like 2 Zfp36l2 298765 NM_001036626 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // not recorded /// 0043488 // regulation of mRNA stability // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373107_at BF283792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283792 /DB_XREF=gi:11214862 /DB_XREF=EST448383 /CLONE=RGIEG82 /FEA=EST /CNT=13 /TID=Rn.8024.1 /TIER=Stack /STK=9 /UG=Rn.8024 /UG_TITLE=ESTs, Weakly similar to Beta-mannosyltransferase (Caenorhabditis elegans) (C.elegans) BF283792 asparagine-linked glycosylation 1, beta-1,4-mannosyltransferase homolog (S. cerevisiae) Alg1 360475 NM_001108264 0009058 // biosynthetic process // inferred from electronic annotation 1373108_at BM390827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390827 /DB_XREF=gi:18190880 /DB_XREF=UI-R-CN1-cjo-j-16-0-UI.s1 /CLONE=UI-R-CN1-cjo-j-16-0-UI /FEA=EST /CNT=13 /TID=Rn.1767.1 /TIER=Stack /STK=9 /UG=Rn.1767 /UG_TITLE=ESTs BM390827 protein phosphatase 1, regulatory (inhibitor) subunit 3C Ppp1r3c 309513 NM_001012072 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // not recorded /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005978 // glycogen biosynthetic process // not recorded /// 0005978 // glycogen biosynthetic process // inferred from electronic annotation /// 0005979 // regulation of glycogen biosynthetic process // inferred from direct assay /// 0005981 // regulation of glycogen catabolic process // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0042587 // glycogen granule // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from mutant phenotype 1373109_at BI294813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294813 /DB_XREF=gi:14957632 /DB_XREF=UI-R-DK0-cec-d-11-0-UI.s1 /CLONE=UI-R-DK0-cec-d-11-0-UI /FEA=EST /CNT=13 /TID=Rn.24888.1 /TIER=Stack /STK=9 /UG=Rn.24888 /UG_TITLE=ESTs BI294813 mitogen activated protein kinase kinase 7 Map2k7 363855 NM_001025425 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006950 // response to stress // inferred from direct assay /// 0006950 // response to stress // not recorded /// 0007254 // JNK cascade // inferred from direct assay /// 0007257 // activation of JUN kinase activity // inferred from direct assay /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0051403 // stress-activated MAPK cascade // inferred from direct assay /// 0051403 // stress-activated MAPK cascade // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004708 // MAP kinase kinase activity // inferred from direct assay /// 0004708 // MAP kinase kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008545 // JUN kinase kinase activity // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1373110_at AI407487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407487 /DB_XREF=gi:4250991 /DB_XREF=EST235776 /CLONE=ROVDU14 /FEA=EST /CNT=13 /TID=Rn.1452.1 /TIER=Stack /STK=9 /UG=Rn.1452 /UG_TITLE=ESTs AI407487 1373111_at AI169441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169441 /DB_XREF=gi:3705749 /DB_XREF=EST215293 /CLONE=RKIBS42 /FEA=EST /CNT=13 /TID=Rn.19458.1 /TIER=Stack /STK=9 /UG=Rn.19458 /UG_TITLE=ESTs AI169441 calpain 7 Capn7 306260 NM_001030037 0006508 // proteolysis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0004198 // calcium-dependent cysteine-type endopeptidase activity // inferred from electronic annotation 1373112_at BE110870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110870 /DB_XREF=gi:8502975 /DB_XREF=UI-R-BJ1-aus-h-10-0-UI.s1 /CLONE=UI-R-BJ1-aus-h-10-0-UI /FEA=EST /CNT=13 /TID=Rn.18702.1 /TIER=Stack /STK=9 /UG=Rn.18702 /UG_TITLE=ESTs, Weakly similar to T17271 hypothetical protein DKFZp434B0335.1 (H.sapiens) BE110870 Tectonin beta-propeller repeat containing 1 Tecpr1 304285 NM_001037191 0016021 // integral to membrane // inferred from electronic annotation 1373113_at AI231778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231778 /DB_XREF=gi:3815658 /DB_XREF=EST228466 /CLONE=RHECO18 /FEA=EST /CNT=12 /TID=Rn.3848.1 /TIER=Stack /STK=9 /UG=Rn.3848 /UG_TITLE=ESTs AI231778 membrane-associated ring finger (C3HC4) 8 March8 312656 NM_001107882 0008270 // zinc ion binding // inferred from electronic annotation 1373114_at AI408442 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408442 /DB_XREF=gi:4251946 /DB_XREF=EST236732 /CLONE=ROVEO36 /FEA=EST /CNT=12 /TID=Rn.18597.1 /TIER=Stack /STK=9 /UG=Rn.18597 /UG_TITLE=ESTs AI408442 1373115_at BI281909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281909 /DB_XREF=gi:14932129 /DB_XREF=UI-R-CU0s-cbu-a-08-0-UI.s1 /CLONE=UI-R-CU0s-cbu-a-08-0-UI /FEA=EST /CNT=12 /TID=Rn.17453.1 /TIER=Stack /STK=9 /UG=Rn.17453 /UG_TITLE=ESTs BI281909 coiled-coil domain containing 115 Ccdc115 363213 NM_001108793 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded 1373116_at AA945320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945320 /DB_XREF=gi:3105236 /DB_XREF=EST200819 /CLONE=RLIAK72 /FEA=EST /CNT=12 /TID=Rn.18504.1 /TIER=Stack /STK=9 /UG=Rn.18504 /UG_TITLE=ESTs, Highly similar to IMA3 MOUSE IMPORTIN ALPHA-3 SUBUNIT (M.musculus) AA945320 karyopherin alpha 3 Kpna3 361055 NM_001014792 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation 1373117_at BI275765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275765 /DB_XREF=gi:14919999 /DB_XREF=UI-R-CX0-bxg-d-05-0-UI.s1 /CLONE=UI-R-CX0-bxg-d-05-0-UI /FEA=EST /CNT=12 /TID=Rn.2173.1 /TIER=Stack /STK=9 /UG=Rn.2173 /UG_TITLE=ESTs BI275765 ubiquitin-like with PHD and ring finger domains 2 Uhrf2 309331 NM_001107585 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0008283 // cell proliferation // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0030154 // cell differentiation // not recorded /// 0051865 // protein autoubiquitination // not recorded 0005634 // nucleus // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373118_at BM387460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387460 /DB_XREF=gi:18187513 /DB_XREF=UI-R-CN1-cjj-g-20-0-UI.s1 /CLONE=UI-R-CN1-cjj-g-20-0-UI /FEA=EST /CNT=12 /TID=Rn.24684.1 /TIER=Stack /STK=9 /UG=Rn.24684 /UG_TITLE=ESTs, Weakly similar to T14744 hypothetical protein DKFZp586F0424.1 (H.sapiens) BM387460 similar to Protein KIAA1543 LOC689074 689074 NM_001144840 0034453 // microtubule anchoring // inferred from sequence or structural similarity /// 0045218 // zonula adherens maintenance // inferred from sequence or structural similarity /// 0070507 // regulation of microtubule cytoskeleton organization // inferred from sequence or structural similarity /// 0090136 // epithelial cell-cell adhesion // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005915 // zonula adherens // inferred from sequence or structural similarity 0051011 // microtubule minus-end binding // inferred from sequence or structural similarity 1373119_at BF407757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407757 /DB_XREF=gi:11395732 /DB_XREF=UI-R-BJ2-brd-b-12-0-UI.s1 /CLONE=UI-R-BJ2-brd-b-12-0-UI /FEA=EST /CNT=12 /TID=Rn.19263.1 /TIER=Stack /STK=9 /UG=Rn.19263 /UG_TITLE=ESTs BF407757 potassium channel tetramerisation domain containing 3 Kctd3 305055 NM_001107199 0006813 // potassium ion transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1373120_at BM389931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389931 /DB_XREF=gi:18189984 /DB_XREF=UI-R-CN1-cji-n-16-0-UI.s1 /CLONE=UI-R-CN1-cji-n-16-0-UI /FEA=EST /CNT=12 /TID=Rn.12563.2 /TIER=Stack /STK=9 /UG=Rn.12563 /LL=114210 /UG_GENE=Spata2 /UG_TITLE=spermatogenesis associated 2 BM389931 spermatogenesis associated 2 Spata2 114210 NM_053675 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1373121_at BE097240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097240 /DB_XREF=gi:8488171 /DB_XREF=UI-R-BO1-apv-a-03-0-UI.s1 /CLONE=UI-R-BO1-apv-a-03-0-UI /FEA=EST /CNT=12 /TID=Rn.12952.1 /TIER=Stack /STK=9 /UG=Rn.12952 /UG_TITLE=ESTs, Weakly similar to Y43F8C.8.p (Caenorhabditis elegans) (C.elegans) BE097240 mitochondrial ribosomal protein S28 Mrps28 689025 NM_001047909 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1373122_at BI284400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284400 /DB_XREF=gi:14937042 /DB_XREF=UI-R-CX0s-cco-f-10-0-UI.s1 /CLONE=UI-R-CX0s-cco-f-10-0-UI /FEA=EST /CNT=12 /TID=Rn.23658.1 /TIER=Stack /STK=9 /UG=Rn.23658 /UG_TITLE=ESTs BI284400 jub, ajuba homolog (Xenopus laevis) Jub 85265 NM_053503 0007049 // cell cycle // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0030032 // lamellipodium assembly // inferred from electronic annotation /// 0030032 // lamellipodium assembly // not recorded /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0030334 // regulation of cell migration // not recorded /// 0035313 // wound healing, spreading of epidermal cells // inferred from electronic annotation /// 0035313 // wound healing, spreading of epidermal cells // not recorded /// 0043087 // regulation of GTPase activity // inferred from electronic annotation /// 0043087 // regulation of GTPase activity // not recorded /// 0048041 // focal adhesion assembly // inferred from electronic annotation /// 0048041 // focal adhesion assembly // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030054 // cell junction // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373123_at BG372671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372671 /DB_XREF=gi:13269208 /DB_XREF=UI-R-CV1-brz-b-10-0-UI.s1 /CLONE=UI-R-CV1-brz-b-10-0-UI /FEA=EST /CNT=12 /TID=Rn.22107.1 /TIER=Stack /STK=9 /UG=Rn.22107 /UG_TITLE=ESTs BG372671 RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) Rmi1 306734 XM_001067170 /// XM_225150 1373124_at BI282912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282912 /DB_XREF=gi:14934148 /DB_XREF=UI-R-CW0s-ccc-g-10-0-UI.s1 /CLONE=UI-R-CW0s-ccc-g-10-0-UI /FEA=EST /CNT=12 /TID=Rn.2801.2 /TIER=Stack /STK=9 /UG=Rn.2801 /LL=83805 /UG_GENE=Src /UG_TITLE=tyrosine protein kinase pp60-c-src BI282912 V-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) Src 83805 NM_031977 0001101 // response to acid // inferred from expression pattern /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006950 // response to stress // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from expression pattern /// 0007243 // intracellular protein kinase cascade // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0008283 // cell proliferation // inferred from direct assay /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009615 // response to virus // inferred from expression pattern /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0010740 // positive regulation of intracellular protein kinase cascade // inferred from mutant phenotype /// 0010907 // positive regulation of glucose metabolic process // inferred from mutant phenotype /// 0014911 // positive regulation of smooth muscle cell migration // inferred from mutant phenotype /// 0016310 // phosphorylation // not recorded /// 0016337 // cell-cell adhesion // inferred from expression pattern /// 0016477 // cell migration // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0033146 // regulation of estrogen receptor signaling pathway // not recorded /// 0033146 // regulation of estrogen receptor signaling pathway // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from direct assay /// 0045056 // transcytosis // inferred from direct assay /// 0045785 // positive regulation of cell adhesion // inferred from direct assay /// 0046628 // positive regulation of insulin receptor signaling pathway // inferred from direct assay /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from expression pattern /// 0048011 // nerve growth factor receptor signaling pathway // inferred from direct assay /// 0048477 // oogenesis // not recorded /// 0048477 // oogenesis // inferred from electronic annotation /// 0050715 // positive regulation of cytokine secretion // inferred from mutant phenotype /// 0051222 // positive regulation of protein transport // inferred from mutant phenotype /// 0051385 // response to mineralocorticoid stimulus // inferred from expression pattern /// 0051602 // response to electrical stimulus // inferred from expression pattern /// 0060065 // uterus development // not recorded /// 0060065 // uterus development // inferred from electronic annotation /// 0060444 // branching involved in mammary gland duct morphogenesis // not recorded /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070542 // response to fatty acid // inferred from expression pattern /// 0070555 // response to interleukin-1 // not recorded /// 0071222 // cellular response to lipopolysaccharide // inferred from expression pattern /// 0071398 // cellular response to fatty acid // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from expression pattern 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005901 // caveola // inferred from direct assay /// 0005901 // caveola // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0019717 // synaptosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005080 // protein kinase C binding // inferred from physical interaction /// 0005102 // receptor binding // inferred from physical interaction /// 0005158 // insulin receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019904 // protein domain specific binding // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0042169 // SH2 domain binding // not recorded /// 0050839 // cell adhesion molecule binding // inferred from physical interaction 1373125_at AW915749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915749 /DB_XREF=gi:8081456 /DB_XREF=EST347053 /CLONE=RGIDA26 /FEA=EST /CNT=12 /TID=Rn.13031.1 /TIER=Stack /STK=9 /UG=Rn.13031 /UG_TITLE=ESTs, Moderately similar to A41539 kinesin light chain A - rat (R.norvegicus) AW915749 kinesin light chain 2 Klc2 309159 NM_001107571 0008088 // axon cargo transport // not recorded /// 0008088 // axon cargo transport // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005871 // kinesin complex // inferred from electronic annotation /// 0005871 // kinesin complex // not recorded /// 0035253 // ciliary rootlet // not recorded /// 0035253 // ciliary rootlet // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from electronic annotation 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1373126_at AW918188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918188 /DB_XREF=gi:8083958 /DB_XREF=EST349492 /CLONE=RGIEN61 /FEA=EST /CNT=12 /TID=Rn.1563.1 /TIER=Stack /STK=9 /UG=Rn.1563 /UG_TITLE=ESTs AW918188 1373127_at BM383645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383645 /DB_XREF=gi:18183698 /DB_XREF=UI-R-DM1-cka-j-20-0-UI.s1 /CLONE=UI-R-DM1-cka-j-20-0-UI /FEA=EST /CNT=12 /TID=Rn.13034.1 /TIER=Stack /STK=9 /UG=Rn.13034 /UG_TITLE=ESTs BM383645 1373128_at BI278379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278379 /DB_XREF=gi:14925174 /DB_XREF=UI-R-CW0-bwd-h-05-0-UI.s1 /CLONE=UI-R-CW0-bwd-h-05-0-UI /FEA=EST /CNT=12 /TID=Rn.2997.1 /TIER=Stack /STK=9 /UG=Rn.2997 /UG_TITLE=ESTs, Weakly similar to CALU MOUSE CALUMENIN PRECURSOR (M.musculus) BI278379 reticulocalbin 3, EF-hand calcium binding domain Rcn3 494125 NM_001008694 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373129_at BF388415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388415 /DB_XREF=gi:11373239 /DB_XREF=UI-R-BS2-bdc-c-01-0-UI.s1 /CLONE=UI-R-BS2-bdc-c-01-0-UI /FEA=EST /CNT=12 /TID=Rn.17131.1 /TIER=Stack /STK=9 /UG=Rn.17131 /UG_TITLE=ESTs BF388415 1373130_at AI407239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407239 /DB_XREF=gi:4250743 /DB_XREF=EST235527 /CLONE=ROVDX29 /FEA=EST /CNT=12 /TID=Rn.33916.1 /TIER=Stack /STK=9 /UG=Rn.33916 /UG_TITLE=ESTs, Moderately similar to S43529 165K protein, skeletal muscle (H.sapiens) AI407239 myomesin 2 Myom2 306616 NM_001169141 0006936 // muscle contraction // inferred from electronic annotation /// 0006936 // muscle contraction // not recorded 0008307 // structural constituent of muscle // traceable author statement 1373131_at AI175544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175544 /DB_XREF=gi:3726182 /DB_XREF=EST219099 /CLONE=RMUCO79 /FEA=EST /CNT=12 /TID=Rn.12135.1 /TIER=Stack /STK=9 /UG=Rn.12135 /UG_TITLE=ESTs AI175544 1373132_at AI178689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178689 /DB_XREF=gi:3729327 /DB_XREF=EST222370 /CLONE=RPLCU36 /FEA=EST /CNT=12 /TID=Rn.7518.1 /TIER=Stack /STK=9 /UG=Rn.7518 /UG_TITLE=ESTs AI178689 proline rich 14 Prr14 691898 XM_001080025 /// XM_002725688 1373133_at BF410786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410786 /DB_XREF=gi:11398761 /DB_XREF=UI-R-CN0-bml-a-05-0-UI.s1 /CLONE=UI-R-CN0-bml-a-05-0-UI /FEA=EST /CNT=12 /TID=Rn.6283.1 /TIER=Stack /STK=9 /UG=Rn.6283 /UG_TITLE=ESTs BF410786 ADP-ribosylation factor-like 8B Arl8b 500282 NM_001024332 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007059 // chromosome segregation // not recorded /// 0007067 // mitosis // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from electronic annotation /// 0030496 // midbody // not recorded /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0051233 // spindle midzone // inferred from electronic annotation /// 0051233 // spindle midzone // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0019003 // GDP binding // inferred from electronic annotation /// 0019003 // GDP binding // not recorded /// 0043014 // alpha-tubulin binding // inferred from electronic annotation /// 0043014 // alpha-tubulin binding // not recorded /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // not recorded 1373134_at BE329450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329450 /DB_XREF=gi:9203226 /DB_XREF=hq37e06.x1 /CLONE=IMAGE:3121570 /FEA=EST /CNT=12 /TID=Rn.7296.1 /TIER=Stack /STK=9 /UG=Rn.7296 /UG_TITLE=ESTs, Moderately similar to AF151863 1 CGI-105 protein (H.sapiens) BE329450 fumarylacetoacetate hydrolase domain containing 2A Fahd2a 296131 NM_001134834 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373135_at AW531123 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531123 /DB_XREF=gi:7173537 /DB_XREF=UI-R-BT1-akv-a-04-0-UI.s1 /CLONE=UI-R-BT1-akv-a-04-0-UI /FEA=EST /CNT=12 /TID=Rn.22262.1 /TIER=Stack /STK=9 /UG=Rn.22262 /UG_TITLE=ESTs AW531123 alanyl-tRNA synthetase domain containing 1 Aarsd1 619440 NM_001034109 0006412 // translation // inferred from electronic annotation /// 0006419 // alanyl-tRNA aminoacylation // inferred from electronic annotation /// 0043039 // tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004813 // alanine-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016876 // ligase activity, forming aminoacyl-tRNA and related compounds // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373136_at AI013609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013609 /DB_XREF=gi:3227665 /DB_XREF=EST208284 /CLONE=RSPBP45 /FEA=EST /CNT=17 /TID=Rn.3372.1 /TIER=Stack /STK=9 /UG=Rn.3372 /UG_TITLE=ESTs AI013609 zinc finger with UFM1-specific peptidase domain Zufsp 294390 NM_001008308 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373137_at BI284360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284360 /DB_XREF=gi:14936967 /DB_XREF=UI-R-CX0s-cco-c-04-0-UI.s1 /CLONE=UI-R-CX0s-cco-c-04-0-UI /FEA=EST /CNT=15 /TID=Rn.17212.1 /TIER=Stack /STK=9 /UG=Rn.17212 /UG_TITLE=ESTs BI284360 similar to CG11388-PA RGD1308154 363799 XM_002724673 /// XM_344027 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1373138_at AA858886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858886 /DB_XREF=gi:4229079 /DB_XREF=UI-R-A0-bd-c-04-0-UI.s1 /CLONE=UI-R-A0-bd-c-04-0-UI /FEA=EST /CNT=14 /TID=Rn.2456.1 /TIER=Stack /STK=9 /UG=Rn.2456 /UG_TITLE=ESTs, Weakly similar to W02G9.1.p (Caenorhabditis elegans) (C.elegans) AA858886 nudix (nucleoside diphosphate linked moiety X)-type motif 5 Nudt5 361274 NM_001007733 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // not recorded /// 0009191 // ribonucleoside diphosphate catabolic process // not recorded /// 0009191 // ribonucleoside diphosphate catabolic process // inferred from sequence or structural similarity 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017110 // nucleoside-diphosphatase activity // inferred from electronic annotation /// 0017110 // nucleoside-diphosphatase activity // not recorded /// 0019144 // ADP-sugar diphosphatase activity // not recorded /// 0019144 // ADP-sugar diphosphatase activity // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047631 // ADP-ribose diphosphatase activity // inferred from electronic annotation 1373139_at AI012608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012608 /DB_XREF=gi:3226440 /DB_XREF=EST207059 /CLONE=RPLAZ49 /FEA=EST /CNT=14 /TID=Rn.8692.1 /TIER=Stack /STK=9 /UG=Rn.8692 /UG_TITLE=ESTs AI012608 1373140_at AA851740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851740 /DB_XREF=gi:2939280 /DB_XREF=EST194508 /CLONE=RSPAJ24 /FEA=EST /CNT=14 /TID=Rn.3955.1 /TIER=Stack /STK=9 /UG=Rn.3955 /UG_TITLE=ESTs AA851740 interleukin 6 signal transducer Il6st 25205 NM_001008725 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // not recorded /// 0006642 // triglyceride mobilization // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007259 // JAK-STAT cascade // inferred from mutant phenotype /// 0007584 // response to nutrient // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008593 // regulation of Notch signaling pathway // inferred from electronic annotation /// 0008593 // regulation of Notch signaling pathway // not recorded /// 0014911 // positive regulation of smooth muscle cell migration // inferred from mutant phenotype /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // traceable author statement /// 0034097 // response to cytokine stimulus // inferred from electronic annotation /// 0034097 // response to cytokine stimulus // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0042511 // positive regulation of tyrosine phosphorylation of Stat1 protein // inferred from electronic annotation /// 0042511 // positive regulation of tyrosine phosphorylation of Stat1 protein // not recorded /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // inferred from electronic annotation /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0046883 // regulation of hormone secretion // traceable author statement /// 0048711 // positive regulation of astrocyte differentiation // inferred from electronic annotation /// 0048711 // positive regulation of astrocyte differentiation // not recorded /// 0048861 // leukemia inhibitory factor signaling pathway // inferred from electronic annotation /// 0048861 // leukemia inhibitory factor signaling pathway // not recorded /// 0051481 // reduction of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0070104 // negative regulation of interleukin-6-mediated signaling pathway // inferred from electronic annotation /// 0070104 // negative regulation of interleukin-6-mediated signaling pathway // not recorded /// 0070106 // interleukin-27-mediated signaling pathway // inferred from electronic annotation /// 0070106 // interleukin-27-mediated signaling pathway // not recorded /// 0070120 // ciliary neurotrophic factor-mediated signaling pathway // inferred from electronic annotation /// 0070120 // ciliary neurotrophic factor-mediated signaling pathway // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005896 // interleukin-6 receptor complex // inferred from electronic annotation /// 0005896 // interleukin-6 receptor complex // not recorded /// 0005900 // oncostatin-M receptor complex // inferred from electronic annotation /// 0005900 // oncostatin-M receptor complex // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0070110 // ciliary neurotrophic factor receptor complex // inferred from electronic annotation /// 0070110 // ciliary neurotrophic factor receptor complex // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004897 // ciliary neurotrophic factor receptor activity // not recorded /// 0004897 // ciliary neurotrophic factor receptor activity // inferred from electronic annotation /// 0004915 // interleukin-6 receptor activity // inferred from electronic annotation /// 0004915 // interleukin-6 receptor activity // not recorded /// 0004921 // interleukin-11 receptor activity // inferred from electronic annotation /// 0004921 // interleukin-11 receptor activity // not recorded /// 0004923 // leukemia inhibitory factor receptor activity // inferred from electronic annotation /// 0004923 // leukemia inhibitory factor receptor activity // not recorded /// 0004924 // oncostatin-M receptor activity // inferred from electronic annotation /// 0004924 // oncostatin-M receptor activity // not recorded /// 0005125 // cytokine activity // traceable author statement /// 0005127 // ciliary neurotrophic factor receptor binding // inferred from electronic annotation /// 0005127 // ciliary neurotrophic factor receptor binding // not recorded /// 0005138 // interleukin-6 receptor binding // inferred from electronic annotation /// 0005138 // interleukin-6 receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded /// 0019838 // growth factor binding // inferred from electronic annotation /// 0019970 // interleukin-11 binding // not recorded /// 0019970 // interleukin-11 binding // inferred from electronic annotation /// 0019981 // interleukin-6 binding // not recorded /// 0019981 // interleukin-6 binding // inferred from electronic annotation 1373141_at AI236683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236683 /DB_XREF=gi:3830189 /DB_XREF=EST233245 /CLONE=ROVDJ24 /FEA=EST /CNT=13 /TID=Rn.2409.1 /TIER=Stack /STK=9 /UG=Rn.2409 /UG_TITLE=ESTs, Moderately similar to RHG4_HUMAN RHO-GTPASE-ACTIVATING PROTEIN 4 (H.sapiens) AI236683 ariadne homolog 2 (Drosophila) Arih2 316005 NM_001012275 0000209 // protein polyubiquitination // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0048588 // developmental cell growth // not recorded /// 0070534 // protein K63-linked ubiquitination // not recorded /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0071425 // hemopoietic stem cell proliferation // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373142_at AA858928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858928 /DB_XREF=gi:4229202 /DB_XREF=UI-R-A0-bi-h-01-0-UI.s1 /CLONE=UI-R-A0-bi-h-01-0-UI /FEA=EST /CNT=13 /TID=Rn.65535.1 /TIER=Stack /STK=9 /UG=Rn.65535 /UG_TITLE=ESTs AA858928 1373143_at BM390131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390131 /DB_XREF=gi:18190184 /DB_XREF=UI-R-CN1-cjp-h-06-0-UI.s1 /CLONE=UI-R-CN1-cjp-h-06-0-UI /FEA=EST /CNT=13 /TID=Rn.15255.1 /TIER=Stack /STK=9 /UG=Rn.15255 /UG_TITLE=ESTs BM390131 similar to hypothetical protein FLJ10652 RGD1309621 316982 XM_001075984 /// XM_229579 1373144_at BM388977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388977 /DB_XREF=gi:18189030 /DB_XREF=UI-R-DZ0-ckn-f-12-0-UI.s1 /CLONE=UI-R-DZ0-ckn-f-12-0-UI /FEA=EST /CNT=13 /TID=Rn.2848.1 /TIER=Stack /STK=9 /UG=Rn.2848 /UG_TITLE=ESTs, Moderately similar to T12473 hypothetical protein DKFZp564G1762.1 (H.sapiens) BM388977 RUN and SH3 domain containing 1-like LOC100360417 100360417 XR_086175 1373145_at BI281884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281884 /DB_XREF=gi:14932080 /DB_XREF=UI-R-CU0s-cbt-g-01-0-UI.s1 /CLONE=UI-R-CU0s-cbt-g-01-0-UI /FEA=EST /CNT=13 /TID=Rn.6409.1 /TIER=Stack /STK=9 /UG=Rn.6409 /UG_TITLE=ESTs, Moderately similar to VP41_HUMAN VACUOLAR ASSEMBLY PROTEIN VPS41 HOMOLOG (H.sapiens) BI281884 similar to Vps41 protein RGD1560511 306991 NM_001107355 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1373146_at AI716240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716240 /DB_XREF=gi:5033493 /DB_XREF=UI-R-Y0-abr-d-12-0-UI.s1 /CLONE=UI-R-Y0-abr-d-12-0-UI /FEA=EST /CNT=13 /TID=Rn.21417.1 /TIER=Stack /STK=9 /UG=Rn.21417 /UG_TITLE=ESTs AI716240 synovial sarcoma, X breakpoint 2 interacting protein Ssx2ip 308023 NM_175597 0007155 // cell adhesion // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // non-traceable author statement 0005912 // adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030674 // protein binding, bridging // non-traceable author statement 1373147_at AI145387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145387 /DB_XREF=gi:3667186 /DB_XREF=UI-R-BT0-qe-d-10-0-UI.s1 /CLONE=UI-R-BT0-qe-d-10-0-UI /FEA=EST /CNT=12 /TID=Rn.14080.1 /TIER=Stack /STK=9 /UG=Rn.14080 /UG_TITLE=ESTs AI145387 F-box and leucine-rich repeat protein 3 Fbxl3 306129 NM_001100568 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373148_at BM384570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384570 /DB_XREF=gi:18184623 /DB_XREF=UI-R-DY0-ckl-e-05-0-UI.s1 /CLONE=UI-R-DY0-ckl-e-05-0-UI /FEA=EST /CNT=12 /TID=Rn.24920.1 /TIER=Stack /STK=9 /UG=Rn.24920 /UG_TITLE=ESTs BM384570 carboxypeptidase X (M14 family), member 2 Cpxm2 293566 NM_001106306 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0004180 // carboxypeptidase activity // not recorded /// 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1373149_at BF285344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285344 /DB_XREF=gi:11216414 /DB_XREF=EST449935 /CLONE=RGIFD85 /FEA=EST /CNT=12 /TID=Rn.38221.1 /TIER=Stack /STK=9 /UG=Rn.38221 /UG_TITLE=ESTs, Moderately similar to T50835 hypothetical protein (H.sapiens) BF285344 yippee-like 3 (Drosophila) Ypel3 293491 NM_001135698 1373150_at AW251225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251225 /DB_XREF=gi:6594816 /DB_XREF=UI-R-BJ0-adf-f-08-0-UI.s1 /CLONE=UI-R-BJ0-adf-f-08-0-UI /FEA=EST /CNT=12 /TID=Rn.7399.1 /TIER=Stack /STK=9 /UG=Rn.7399 /UG_TITLE=ESTs, Weakly similar to T26581 hypothetical protein Y32B12A.3 - Caenorhabditis elegans (C.elegans) AW251225 catechol-O-methyltransferase domain containing 1 Comtd1 305685 NM_001107249 0005739 // mitochondrion // not recorded 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008171 // O-methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1373151_at AW252169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252169 /DB_XREF=gi:6595760 /DB_XREF=UI-R-BJ0-ads-a-08-0-UI.s1 /CLONE=UI-R-BJ0-ads-a-08-0-UI /FEA=EST /CNT=12 /TID=Rn.6635.1 /TIER=Stack /STK=9 /UG=Rn.6635 /UG_TITLE=ESTs AW252169 lipoma HMGIC fusion partner Lhfp 499615 NM_001109183 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1373152_at AI177099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177099 /DB_XREF=gi:3727737 /DB_XREF=EST220706 /CLONE=ROVCA78 /FEA=EST /CNT=12 /TID=Rn.7422.1 /TIER=Stack /STK=9 /UG=Rn.7422 /UG_TITLE=ESTs AI177099 protease, serine, 23 Prss23 308807 NM_001007691 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1373153_at AI230720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230720 /DB_XREF=gi:4135585 /DB_XREF=EST227415 /CLONE=REMDA42 /FEA=EST /CNT=12 /TID=Rn.35572.1 /TIER=Stack /STK=9 /UG=Rn.35572 /UG_TITLE=ESTs, Moderately similar to myelin oligodendrocyte glycoprotein (Rattus norvegicus) (R.norvegicus) AI230720 1373154_at BI278842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278842 /DB_XREF=gi:14926080 /DB_XREF=UI-R-CX0-bwx-e-10-0-UI.s1 /CLONE=UI-R-CX0-bwx-e-10-0-UI /FEA=EST /CNT=12 /TID=Rn.2885.1 /TIER=Stack /STK=9 /UG=Rn.2885 /UG_TITLE=ESTs, Moderately similar to T43495 hypothetical protein DKFZp434E199.1 (H.sapiens) BI278842 Similar to mKIAA0998 protein RGD1563583 299208 XR_007629 /// XR_086285 1373155_at BI283167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283167 /DB_XREF=gi:14934644 /DB_XREF=UI-R-CU0s-cca-h-03-0-UI.s1 /CLONE=UI-R-CU0s-cca-h-03-0-UI /FEA=EST /CNT=12 /TID=Rn.22670.1 /TIER=Stack /STK=9 /UG=Rn.22670 /UG_TITLE=ESTs BI283167 mitochondrial ribosomal protein L46 Mrpl46 293054 NM_001013068 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation 1373156_at AI385330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385330 /DB_XREF=gi:4198112 /DB_XREF=UI-R-C2-mw-g-10-0-UI.s2 /CLONE=UI-R-C2-mw-g-10-0-UI /FEA=EST /CNT=12 /TID=Rn.15754.1 /TIER=Stack /STK=9 /UG=Rn.15754 /UG_TITLE=ESTs, Highly similar to T00084 hypothetical protein KIAA0512 (H.sapiens) AI385330 armadillo repeat containing, X-linked 2 Armcx2 367903 NM_001014274 0005488 // binding // inferred from electronic annotation 1373157_at AI407830 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407830 /DB_XREF=gi:4251334 /DB_XREF=EST236120 /CLONE=ROVEC37 /FEA=EST /CNT=11 /TID=Rn.44198.1 /TIER=Stack /STK=9 /UG=Rn.44198 /UG_TITLE=ESTs AI407830 ubiquitin specific peptidase 47 Usp47 308896 NM_001107542 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1373158_at AI170446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170446 /DB_XREF=gi:3710486 /DB_XREF=EST216373 /CLONE=RLUCN45 /FEA=EST /CNT=11 /TID=Rn.17812.1 /TIER=Stack /STK=9 /UG=Rn.17812 /UG_TITLE=ESTs AI170446 G protein-coupled receptor 146 Gpr146 498153 NM_001109062 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 1373159_at AI411370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411370 /DB_XREF=gi:4254874 /DB_XREF=EST239664 /CLONE=RKIES14 /FEA=EST /CNT=11 /TID=Rn.7530.1 /TIER=Stack /STK=9 /UG=Rn.7530 /UG_TITLE=ESTs AI411370 1373160_at BM388961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388961 /DB_XREF=gi:18189014 /DB_XREF=UI-R-DZ0-ckn-b-18-0-UI.s1 /CLONE=UI-R-DZ0-ckn-b-18-0-UI /FEA=EST /CNT=11 /TID=Rn.12866.1 /TIER=Stack /STK=9 /UG=Rn.12866 /UG_TITLE=ESTs BM388961 phosphatidic acid phosphatase type 2 domain containing 1B Ppapdc1b 680466 NM_001109411 0016020 // membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation 1373161_at BM386009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386009 /DB_XREF=gi:18186062 /DB_XREF=UI-R-DN1-ckf-l-03-0-UI.s1 /CLONE=UI-R-DN1-ckf-l-03-0-UI /FEA=EST /CNT=11 /TID=Rn.24570.1 /TIER=Stack /STK=9 /UG=Rn.24570 /UG_TITLE=ESTs, Highly similar to T17328 hypothetical protein DKFZp564K1964.1 (H.sapiens) BM386009 transmembrane protein 98 Tmem98 303356 NM_001007672 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1373162_at AI600085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600085 /DB_XREF=gi:4609133 /DB_XREF=EST251788 /CLONE=REMDQ80 /FEA=EST /CNT=11 /TID=Rn.11812.1 /TIER=Stack /STK=9 /UG=Rn.11812 /UG_TITLE=ESTs AI600085 similar to transmembrane protein 41a LOC681708 681708 NM_001100805 1373163_at BI287702 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287702 /DB_XREF=gi:14943587 /DB_XREF=UI-R-CW0s-cck-g-06-0-UI.s1 /CLONE=UI-R-CW0s-cck-g-06-0-UI /FEA=EST /CNT=11 /TID=Rn.6599.1 /TIER=Stack /STK=9 /UG=Rn.6599 /UG_TITLE=ESTs, Weakly similar to UBPP_MOUSE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 25 (UBIQUITIN THIOLESTERASE 25) (UBIQUITIN-SPECIFIC PROCESSING PROTEASE 25) (DEUBIQUITINATING ENZYME 25) (MUSP25) (M.musculus) BI287702 ubiquitin specific peptidase 28 Usp28 315639 NM_001108144 0000077 // DNA damage checkpoint // not recorded /// 0000077 // DNA damage checkpoint // inferred from sequence or structural similarity /// 0006281 // DNA repair // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from sequence or structural similarity /// 0010212 // response to ionizing radiation // not recorded /// 0010212 // response to ionizing radiation // inferred from sequence or structural similarity /// 0016579 // protein deubiquitination // not recorded /// 0016579 // protein deubiquitination // inferred from sequence or structural similarity /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005654 // nucleoplasm // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // not recorded /// 0004221 // ubiquitin thiolesterase activity // inferred from sequence or structural similarity /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0004843 // ubiquitin-specific protease activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1373164_at AI012590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012590 /DB_XREF=gi:3226422 /DB_XREF=EST207041 /CLONE=RPLAZ29 /FEA=EST /CNT=11 /TID=Rn.1300.1 /TIER=Stack /STK=9 /UG=Rn.1300 /UG_TITLE=ESTs AI012590 1373165_at BF404539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404539 /DB_XREF=gi:11392479 /DB_XREF=UI-R-CA1-big-b-12-0-UI.s1 /CLONE=UI-R-CA1-big-b-12-0-UI /FEA=EST /CNT=11 /TID=Rn.8351.1 /TIER=Stack /STK=9 /UG=Rn.8351 /UG_TITLE=ESTs BF404539 1373166_at BM391823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391823 /DB_XREF=gi:18191876 /DB_XREF=UI-R-DO1-cmk-d-02-0-UI.s1 /CLONE=UI-R-DO1-cmk-d-02-0-UI /FEA=EST /CNT=11 /TID=Rn.17832.1 /TIER=Stack /STK=9 /UG=Rn.17832 /UG_TITLE=ESTs BM391823 1373167_at BI295165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295165 /DB_XREF=gi:14958337 /DB_XREF=UI-R-DK0-ceg-e-09-0-UI.s1 /CLONE=UI-R-DK0-ceg-e-09-0-UI /FEA=EST /CNT=11 /TID=Rn.19243.1 /TIER=Stack /STK=9 /UG=Rn.19243 /UG_TITLE=ESTs BI295165 leucine rich repeat containing 20 Lrrc20 499430 NM_001109171 0005515 // protein binding // inferred from electronic annotation 1373168_at BG380214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380214 /DB_XREF=gi:13304686 /DB_XREF=UI-R-CS0-btq-d-03-0-UI.s1 /CLONE=UI-R-CS0-btq-d-03-0-UI /FEA=EST /CNT=11 /TID=Rn.14729.1 /TIER=Stack /STK=9 /UG=Rn.14729 /UG_TITLE=ESTs BG380214 Similar to LEYDIG CELL TUMOR 10 KD PROTEIN LOC288913 288913 NM_198728 1373169_at AI175416 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175416 /DB_XREF=gi:3726054 /DB_XREF=EST218960 /CLONE=RMUCN22 /FEA=EST /CNT=11 /TID=Rn.15556.1 /TIER=Stack /STK=9 /UG=Rn.15556 /UG_TITLE=ESTs AI175416 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon) Agpat5 306582 NM_001134744 0006639 // acylglycerol metabolic process // inferred from electronic annotation /// 0006639 // acylglycerol metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // inferred from electronic annotation /// 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0046027 // phospholipid:diacylglycerol acyltransferase activity // not recorded 1373170_at BI294756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294756 /DB_XREF=gi:14957520 /DB_XREF=UI-R-DK0-ceb-g-05-0-UI.s1 /CLONE=UI-R-DK0-ceb-g-05-0-UI /FEA=EST /CNT=11 /TID=Rn.74.1 /TIER=Stack /STK=9 /UG=Rn.74 /UG_TITLE=ESTs BI294756 neuralized homolog 4 (Drosophila) Neurl4 303248 NM_001107013 0005515 // protein binding // not recorded 1373171_at BI294854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294854 /DB_XREF=gi:14957714 /DB_XREF=UI-R-DK0-cec-h-09-0-UI.s1 /CLONE=UI-R-DK0-cec-h-09-0-UI /FEA=EST /CNT=11 /TID=Rn.20146.1 /TIER=Stack /STK=9 /UG=Rn.20146 /UG_TITLE=ESTs BI294854 coiled-coil domain containing 21 Ccdc21 362622 NM_001080151 1373172_at AA944483 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944483 /DB_XREF=gi:3104399 /DB_XREF=EST199982 /CLONE=REMAJ85 /FEA=EST /CNT=11 /TID=Rn.32516.1 /TIER=Stack /STK=9 /UG=Rn.32516 /UG_TITLE=ESTs AA944483 hypothetical protein LOC691777 LOC691777 691777 XM_001079602 /// XM_002724616 1373173_at BM390182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390182 /DB_XREF=gi:18190235 /DB_XREF=UI-R-CN1-cjp-p-16-0-UI.s1 /CLONE=UI-R-CN1-cjp-p-16-0-UI /FEA=EST /CNT=11 /TID=Rn.11919.1 /TIER=Stack /STK=9 /UG=Rn.11919 /UG_TITLE=ESTs BM390182 1373174_at AW915592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915592 /DB_XREF=gi:8081293 /DB_XREF=EST346896 /CLONE=RGICY14 /FEA=EST /CNT=11 /TID=Rn.9058.1 /TIER=Stack /STK=9 /UG=Rn.9058 /UG_TITLE=ESTs AW915592 nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1 Nudt16l1 497867 NM_001100782 0016787 // hydrolase activity // inferred from electronic annotation 1373175_at BI285951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285951 /DB_XREF=gi:14940114 /DB_XREF=UI-R-CX0s-ccp-g-01-0-UI.s1 /CLONE=UI-R-CX0s-ccp-g-01-0-UI /FEA=EST /CNT=11 /TID=Rn.3413.1 /TIER=Stack /STK=9 /UG=Rn.3413 /UG_TITLE=ESTs, Weakly similar to Y37D8A.2.p (Caenorhabditis elegans) (C.elegans) BI285951 phospholipase B domain containing 1 Plbd1 297694 NM_001013927 0016042 // lipid catabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation 1373176_at AA943208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943208 /DB_XREF=gi:3103124 /DB_XREF=EST198707 /CLONE=RBRAG46 /FEA=EST /CNT=11 /TID=Rn.824.1 /TIER=Stack /STK=9 /UG=Rn.824 /UG_TITLE=ESTs AA943208 1373177_x_at AI409900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409900 /DB_XREF=gi:4253404 /DB_XREF=EST238193 /CLONE=RPLDM91 /FEA=EST /CNT=11 /TID=Rn.31682.1 /TIER=Stack /STK=9 /UG=Rn.31682 /UG_TITLE=ESTs AI409900 rCG56785-like /// hypothetical LOC363363 /// hypothetical gene supported by BC082068 /// hypothetical protein LOC680682 /// hypothetical protein LOC685369 /// similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) /// hypothetical protein LOC691793 LOC100360189 /// LOC363363 /// LOC501476 /// LOC680682 /// LOC685369 /// LOC689362 /// LOC691793 100360189 /// 363363 /// 501476 /// 680682 /// 685369 /// 689362 /// 691793 XM_001056700 /// XM_001063513 /// XM_001070518 /// XM_001079655 /// XM_001080724 /// XM_002725429 /// XM_002727370 /// XM_002730162 /// XM_002730167 /// XM_343698 1373178_at AA945183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945183 /DB_XREF=gi:4132515 /DB_XREF=EST200682 /CLONE=RLIAH59 /FEA=EST /CNT=11 /TID=Rn.40381.1 /TIER=Stack /STK=9 /UG=Rn.40381 /UG_TITLE=ESTs AA945183 1373179_at BI300727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300727 /DB_XREF=gi:14977007 /DB_XREF=UI-R-CV2-cii-f-10-0-UI.s1 /CLONE=UI-R-CV2-cii-f-10-0-UI /FEA=EST /CNT=11 /TID=Rn.34800.1 /TIER=Stack /STK=9 /UG=Rn.34800 /UG_TITLE=ESTs BI300727 1373180_at AI227919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227919 /DB_XREF=gi:3811806 /DB_XREF=EST224614 /CLONE=RBRCN61 /FEA=EST /CNT=11 /TID=Rn.17029.1 /TIER=Stack /STK=9 /UG=Rn.17029 /UG_TITLE=ESTs AI227919 1373181_at BE101285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101285 /DB_XREF=gi:8493196 /DB_XREF=UI-R-BJ1-aui-c-05-0-UI.s1 /CLONE=UI-R-BJ1-aui-c-05-0-UI /FEA=EST /CNT=11 /TID=Rn.25074.1 /TIER=Stack /STK=9 /UG=Rn.25074 /UG_TITLE=ESTs BE101285 actin filament associated protein 1-like 1 Afap1l1 291565 NM_001106142 0005515 // protein binding // not recorded 1373182_at BF281899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281899 /DB_XREF=gi:11212969 /DB_XREF=EST446490 /CLONE=RGIBH79 /FEA=EST /CNT=11 /TID=Rn.18416.1 /TIER=Stack /STK=9 /UG=Rn.18416 /UG_TITLE=ESTs BF281899 claudin 12 Cldn12 500000 NM_001100813 0005923 // tight junction // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 1373183_at AI229780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229780 /DB_XREF=gi:3813667 /DB_XREF=EST226475 /CLONE=REMCL86 /FEA=EST /CNT=11 /TID=Rn.19806.1 /TIER=Stack /STK=9 /UG=Rn.19806 /UG_TITLE=ESTs AI229780 1373184_at BF410842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410842 /DB_XREF=gi:11398817 /DB_XREF=UI-R-CN0-bml-f-07-0-UI.s1 /CLONE=UI-R-CN0-bml-f-07-0-UI /FEA=EST /CNT=11 /TID=Rn.3853.1 /TIER=Stack /STK=9 /UG=Rn.3853 /UG_TITLE=ESTs BF410842 chondroitin sulfate N-acetylgalactosaminyltransferase 2 Csgalnact2 297554 NM_001106616 0030166 // proteoglycan biosynthetic process // not recorded /// 0050650 // chondroitin sulfate proteoglycan biosynthetic process // not recorded /// 0050651 // dermatan sulfate proteoglycan biosynthetic process // not recorded 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0008376 // acetylgalactosaminyltransferase activity // not recorded /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1373185_at BE329347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329347 /DB_XREF=gi:9203123 /DB_XREF=hq39g07.x1 /CLONE=IMAGE:3121788 /FEA=EST /CNT=11 /TID=Rn.17458.1 /TIER=Stack /STK=9 /UG=Rn.17458 /UG_TITLE=ESTs, Highly similar to SSRB_HUMAN TRANSLOCON-ASSOCIATED PROTEIN, BETA SUBUNIT PRECURSOR (H.sapiens) BE329347 signal sequence receptor, beta Ssr2 295235 NM_001106442 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1373186_at AI176617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176617 /DB_XREF=gi:3727255 /DB_XREF=EST220206 /CLONE=ROVBU58 /FEA=EST /CNT=11 /TID=Rn.23030.1 /TIER=Stack /STK=9 /UG=Rn.23030 /UG_TITLE=ESTs AI176617 SLAIN motif family, member 2 Slain2 305310 NM_001107214 1373187_at AT005533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AT005533 /DB_XREF=gi:13818397 /DB_XREF=AT005533 /CLONE=9-Ad-2 /FEA=EST /CNT=11 /TID=Rn.17903.1 /TIER=Stack /STK=9 /UG=Rn.17903 /UG_TITLE=ESTs AT005533 1373188_at AI137995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137995 /DB_XREF=gi:3638772 /DB_XREF=UI-R-C2p-oi-b-06-0-UI.s1 /CLONE=UI-R-C2p-oi-b-06-0-UI /FEA=EST /CNT=11 /TID=Rn.22230.1 /TIER=Stack /STK=9 /UG=Rn.22230 /UG_TITLE=ESTs AI137995 sodium channel, voltage-gated, type IV, beta Scn4b 315611 NM_001008880 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // not recorded /// 0006814 // sodium ion transport // inferred from electronic annotation 0001518 // voltage-gated sodium channel complex // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005248 // voltage-gated sodium channel activity // not recorded /// 0005272 // sodium channel activity // inferred from electronic annotation 1373189_at AW143154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143154 /DB_XREF=gi:6163053 /DB_XREF=EST293450 /CLONE=RGIBE63 /FEA=EST /CNT=11 /TID=Rn.17271.1 /TIER=Stack /STK=9 /UG=Rn.17271 /UG_TITLE=ESTs AW143154 megakaryoblastic leukemia (translocation) 1 Mkl1 315151 XM_001077101 /// XM_235497 0006350 // transcription // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006916 // anti-apoptosis // not recorded /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0003779 // actin binding // not recorded /// 0003785 // actin monomer binding // not recorded /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded 1373190_at AI101401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101401 /DB_XREF=gi:4134005 /DB_XREF=EST210690 /CLONE=RBRBN92 /FEA=EST /CNT=11 /TID=Rn.11615.1 /TIER=Stack /STK=9 /UG=Rn.11615 /UG_TITLE=ESTs AI101401 CCR4-NOT transcription complex, subunit 4 Cnot4 312227 NM_001037782 0051865 // protein autoubiquitination // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373191_at BG375890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375890 /DB_XREF=gi:13300326 /DB_XREF=UI-R-CT0-buf-d-10-0-UI.s1 /CLONE=UI-R-CT0-buf-d-10-0-UI /FEA=EST /CNT=11 /TID=Rn.32358.1 /TIER=Stack /STK=9 /UG=Rn.32358 /UG_TITLE=ESTs BG375890 0005488 // binding // inferred from electronic annotation 1373192_at BE102484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102484 /DB_XREF=gi:8494583 /DB_XREF=UI-R-BT1-aqn-b-10-0-UI.s1 /CLONE=UI-R-BT1-aqn-b-10-0-UI /FEA=EST /CNT=11 /TID=Rn.41144.1 /TIER=Stack /STK=9 /UG=Rn.41144 /UG_TITLE=ESTs BE102484 WD repeat domain 60 Wdr60 314523 NM_001191773 /// XM_001061189 /// XM_234706 1373193_at BE108670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108670 /DB_XREF=gi:8500775 /DB_XREF=UI-R-CA0-axh-a-06-0-UI.s1 /CLONE=UI-R-CA0-axh-a-06-0-UI /FEA=EST /CNT=11 /TID=Rn.13584.1 /TIER=Stack /STK=9 /UG=Rn.13584 /UG_TITLE=ESTs, Moderately similar to NINM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE MNLL SUBUNIT (H.sapiens) BE108670 1373194_at BF282281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282281 /DB_XREF=gi:11213439 /DB_XREF=EST446960 /CLONE=RGIDM66 /FEA=EST /CNT=11 /TID=Rn.8346.1 /TIER=Stack /STK=9 /UG=Rn.8346 /UG_TITLE=ESTs BF282281 LYR motif containing 2 Lyrm2 690354 NM_001126096 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1373195_at AW532485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532485 /DB_XREF=gi:7174899 /DB_XREF=UI-R-BS0-ami-c-04-0-UI.s1 /CLONE=UI-R-BS0-ami-c-04-0-UI /FEA=EST /CNT=11 /TID=Rn.12958.2 /TIER=Stack /STK=9 /UG=Rn.12958 /UG_TITLE=Rattus norvegicus orphan seven transmembrane receptor (Ieda) mRNA, complete cds AW532485 fusion (involved in t(12;16) in malignant liposarcoma) (human) Fus 317385 NM_001012137 0008380 // RNA splicing // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation 1373196_at BF404514 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404514 /DB_XREF=gi:11392529 /DB_XREF=UI-R-CA1-big-g-11-0-UI.s1 /CLONE=UI-R-CA1-big-g-11-0-UI /FEA=EST /CNT=11 /TID=Rn.23547.1 /TIER=Stack /STK=9 /UG=Rn.23547 /UG_TITLE=ESTs BF404514 EF hand domain family, member A2 Efha2 364601 NM_001191892 /// XM_001065080 /// XM_344525 0005509 // calcium ion binding // inferred from electronic annotation 1373197_at AI578263 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578263 /DB_XREF=gi:4562639 /DB_XREF=UI-R-G0-ui-f-06-0-UI.s2 /CLONE=UI-R-G0-ui-f-06-0-UI /FEA=EST /CNT=11 /TID=Rn.31947.1 /TIER=Stack /STK=9 /UG=Rn.31947 /UG_TITLE=ESTs AI578263 1373198_at BF283018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283018 /DB_XREF=gi:11214088 /DB_XREF=EST447609 /CLONE=RGIDW38 /FEA=EST /CNT=11 /TID=Rn.19564.1 /TIER=Stack /STK=9 /UG=Rn.19564 /UG_TITLE=ESTs, Weakly similar to DnaJ (Hsp40) homolog, subfamily B, member 3; heat shock protein, DNAJ-like 3 (Mus musculus) (M.musculus) BF283018 DnaJ (Hsp40) homolog, subfamily C, member 22 Dnajc22 362998 NM_001014204 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0031072 // heat shock protein binding // inferred from electronic annotation 1373199_at AA943573 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943573 /DB_XREF=gi:3103489 /DB_XREF=EST199072 /CLONE=RBRAL65 /FEA=EST /CNT=11 /TID=Rn.7597.1 /TIER=Stack /STK=9 /UG=Rn.7597 /UG_TITLE=ESTs AA943573 galactosidase, alpha Gla 363494 NM_001108820 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009311 // oligosaccharide metabolic process // not recorded /// 0030282 // bone mineralization // not recorded /// 0046477 // glycosylceramide catabolic process // not recorded 0005576 // extracellular region // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // not recorded /// 0005794 // Golgi apparatus // not recorded 0003824 // catalytic activity // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004557 // alpha-galactosidase activity // inferred from direct assay /// 0004557 // alpha-galactosidase activity // inferred from mutant phenotype /// 0004557 // alpha-galactosidase activity // not recorded /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0016936 // galactoside binding // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0043169 // cation binding // inferred from electronic annotation 1373200_at AI600237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600237 /DB_XREF=gi:4609285 /DB_XREF=EST251940 /CLONE=REMEN66 /FEA=EST /CNT=17 /TID=Rn.6668.1 /TIER=Stack /STK=9 /UG=Rn.6668 /UG_TITLE=ESTs, Moderately similar to MCA3_HUMAN Multisynthetase complex auxiliary component p18 (H.sapiens) AI600237 eukaryotic translation elongation factor 1 epsilon 1 Eef1e1 291057 NM_001106106 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043517 // positive regulation of DNA damage response, signal transduction by p53 class mediator // inferred from electronic annotation /// 0043517 // positive regulation of DNA damage response, signal transduction by p53 class mediator // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373201_at AI412898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412898 /DB_XREF=gi:4256402 /DB_XREF=EST241198 /CLONE=RKIEJ96 /FEA=EST /CNT=16 /TID=Rn.8820.1 /TIER=Stack /STK=9 /UG=Rn.8820 /UG_TITLE=ESTs AI412898 dihydrolipoamide branched chain transacylase E2 Dbt 29611 NM_053312 0008152 // metabolic process // inferred from electronic annotation /// 0046949 // fatty-acyl-CoA biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0043754 // dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation 1373202_at AI112577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112577 /DB_XREF=gi:3512526 /DB_XREF=UI-R-Y0-mn-h-12-0-UI.s1 /CLONE=UI-R-Y0-mn-h-12-0-UI /FEA=EST /CNT=16 /TID=Rn.7247.1 /TIER=Stack /STK=9 /UG=Rn.7247 /UG_TITLE=ESTs, Weakly similar to GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)G(S)G(O) GAMMA-9 SUBUNIT (R.norvegicus) AI112577 guanine nucleotide binding protein (G protein), gamma 3 Gng3 114117 NM_053658 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0009755 // hormone-mediated signaling pathway // not recorded 0005834 // heterotrimeric G-protein complex // inferred from mutant phenotype /// 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0001664 // G-protein-coupled receptor binding // inferred from mutant phenotype /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0031702 // type 1 angiotensin receptor binding // inferred from mutant phenotype 1373203_at AI236953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236953 /DB_XREF=gi:4136271 /DB_XREF=EST233515 /CLONE=ROVDM84 /FEA=EST /CNT=15 /TID=Rn.18996.1 /TIER=Stack /STK=9 /UG=Rn.18996 /UG_TITLE=ESTs, Highly similar to LCB1 MOUSE SERINE PALMITOYLTRANSFERASE 1 (M.musculus) AI236953 serine palmitoyltransferase, long chain base subunit 1 Sptlc1 361213 NM_001108406 0006686 // sphingomyelin biosynthetic process // not recorded /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0046511 // sphinganine biosynthetic process // not recorded /// 0046512 // sphingosine biosynthetic process // not recorded /// 0046513 // ceramide biosynthetic process // not recorded 0017059 // serine C-palmitoyltransferase complex // not recorded /// 0035339 // SPOTS complex // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004758 // serine C-palmitoyltransferase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1373204_at BM388911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388911 /DB_XREF=gi:18188964 /DB_XREF=UI-R-DZ0-ckn-f-19-0-UI.s1 /CLONE=UI-R-DZ0-ckn-f-19-0-UI /FEA=EST /CNT=15 /TID=Rn.17071.1 /TIER=Stack /STK=9 /UG=Rn.17071 /UG_TITLE=ESTs BM388911 transmembrane protein 176A Tmem176a 297077 NM_001039008 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1373205_at BM391897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391897 /DB_XREF=gi:18191950 /DB_XREF=UI-R-DO1-cmk-p-20-0-UI.s1 /CLONE=UI-R-DO1-cmk-p-20-0-UI /FEA=EST /CNT=15 /TID=Rn.6199.1 /TIER=Stack /STK=9 /UG=Rn.6199 /UG_TITLE=ESTs, Weakly similar to U2R2 MOUSE U2 SMALL NUCLEAR RIBONUCLEOPROTEIN AUXILIARY FACTOR 35 KD SUBUNIT RELATED-PROTEIN 2 (M.musculus) BM391897 U2 small nuclear RNA auxiliary factor 1-like 4 U2af1l4 361542 NM_001008775 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373206_at BI289093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289093 /DB_XREF=gi:14946308 /DB_XREF=UI-R-DK0-cfe-d-10-0-UI.s1 /CLONE=UI-R-DK0-cfe-d-10-0-UI /FEA=EST /CNT=12 /TID=Rn.8832.1 /TIER=Stack /STK=9 /UG=Rn.8832 /UG_TITLE=ESTs BI289093 Fibronectin type III domain containing 3B Fndc3b 294925 NM_001191704 /// XM_001057133 /// XM_226988 0045600 // positive regulation of fat cell differentiation // not recorded 0005783 // endoplasmic reticulum // not recorded 1373207_at AI235503 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235503 /DB_XREF=gi:3829009 /DB_XREF=EST232065 /CLONE=ROVCS67 /FEA=EST /CNT=12 /TID=Rn.8190.1 /TIER=Stack /STK=9 /UG=Rn.8190 /UG_TITLE=ESTs AI235503 1373208_at BE113371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113371 /DB_XREF=gi:8505476 /DB_XREF=UI-R-BJ1-awe-e-10-0-UI.s1 /CLONE=UI-R-BJ1-awe-e-10-0-UI /FEA=EST /CNT=12 /TID=Rn.9106.1 /TIER=Stack /STK=9 /UG=Rn.9106 /UG_TITLE=ESTs BE113371 1373209_at AI599284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599284 /DB_XREF=gi:4608332 /DB_XREF=EST250987 /CLONE=REMEQ46 /FEA=EST /CNT=12 /TID=Rn.16374.1 /TIER=Stack /STK=9 /UG=Rn.16374 /UG_TITLE=ESTs AI599284 similar to hypothetical protein MGC30618 RGD1305572 289315 NM_001024970 1373210_at BI296460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296460 /DB_XREF=gi:14960904 /DB_XREF=UI-R-CV2-cgr-e-01-0-UI.s1 /CLONE=UI-R-CV2-cgr-e-01-0-UI /FEA=EST /CNT=12 /TID=Rn.48387.1 /TIER=Stack /STK=9 /UG=Rn.48387 /UG_TITLE=ESTs, Highly similar to MMMSB1 laminin beta-1 chain precursor - mouse (M.musculus) BI296460 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation 1373211_at BF283421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283421 /DB_XREF=gi:11214491 /DB_XREF=EST448012 /CLONE=RGIEB79 /FEA=EST /CNT=11 /TID=Rn.12644.1 /TIER=Stack /STK=9 /UG=Rn.12644 /UG_TITLE=ESTs, Moderately similar to FBW4_MOUSE F-BOXWD-REPEAT PROTEIN 4 (HAGOROMO PROTEIN) (M.musculus) BF283421 F-box and WD repeat domain containing 4 Fbxw4 309444 NM_001107600 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0042733 // embryonic digit morphogenesis // not recorded /// 0051216 // cartilage development // not recorded /// 0060173 // limb development // not recorded 1373212_at BI296531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296531 /DB_XREF=gi:14961046 /DB_XREF=UI-R-CV2-cgs-c-10-0-UI.s1 /CLONE=UI-R-CV2-cgs-c-10-0-UI /FEA=EST /CNT=11 /TID=Rn.38426.1 /TIER=Stack /STK=9 /UG=Rn.38426 /UG_TITLE=ESTs BI296531 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s (factor B) Atp5s 362749 NM_001007749 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation 1373213_at BI274180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274180 /DB_XREF=gi:14884856 /DB_XREF=UI-R-CW0-bwf-h-10-0-UI.s1 /CLONE=UI-R-CW0-bwf-h-10-0-UI /FEA=EST /CNT=11 /TID=Rn.17902.1 /TIER=Stack /STK=9 /UG=Rn.17902 /UG_TITLE=ESTs BI274180 synaptosomal-associated protein 29 Snap29 116500 NM_053810 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 1373214_at AA945238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945238 /DB_XREF=gi:3105154 /DB_XREF=EST200737 /CLONE=RLIAI43 /FEA=EST /CNT=11 /TID=Rn.7848.1 /TIER=Stack /STK=9 /UG=Rn.7848 /UG_TITLE=ESTs AA945238 KDEL (Lys-Asp-Glu-Leu) containing 1 Kdelc1 316370 NM_001108217 0005783 // endoplasmic reticulum // inferred from electronic annotation 1373215_at BI282699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282699 /DB_XREF=gi:14933730 /DB_XREF=UI-R-CW0s-cce-b-08-0-UI.s1 /CLONE=UI-R-CW0s-cce-b-08-0-UI /FEA=EST /CNT=11 /TID=Rn.36566.1 /TIER=Stack /STK=9 /UG=Rn.36566 /UG_TITLE=ESTs BI282699 active BCR-related gene Abr 287537 NM_001105814 0006915 // apoptosis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373216_at AI236521 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236521 /DB_XREF=gi:3830027 /DB_XREF=EST233083 /CLONE=ROVDH19 /FEA=EST /CNT=11 /TID=Rn.23778.1 /TIER=Stack /STK=9 /UG=Rn.23778 /UG_TITLE=ESTs AI236521 hypothetical protein LOC691849 LOC691849 691849 NM_001198796 /// XM_001079851 /// XM_002727082 1373217_at AI010234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010234 /DB_XREF=gi:3224066 /DB_XREF=EST204685 /CLONE=RLUBV55 /FEA=EST /CNT=11 /TID=Rn.3740.1 /TIER=Stack /STK=9 /UG=Rn.3740 /UG_TITLE=ESTs AI010234 EH domain binding protein 1 Ehbp1 305556 XM_001056688 /// XM_001056760 /// XM_002725013 /// XM_002725014 /// XM_002725015 /// XM_223664 0005515 // protein binding // not recorded 1373218_at BG381051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381051 /DB_XREF=gi:13305523 /DB_XREF=UI-R-CT0-bug-f-06-0-UI.s1 /CLONE=UI-R-CT0-bug-f-06-0-UI /FEA=EST /CNT=11 /TID=Rn.23904.1 /TIER=Stack /STK=9 /UG=Rn.23904 /UG_TITLE=ESTs BG381051 1373219_at AA946199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946199 /DB_XREF=gi:3106115 /DB_XREF=EST201698 /CLONE=RLUBC29 /FEA=EST /CNT=11 /TID=Rn.8008.1 /TIER=Stack /STK=9 /UG=Rn.8008 /UG_TITLE=ESTs AA946199 snail homolog 1 (Drosophila) Snai1 116490 NM_053805 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001837 // epithelial to mesenchymal transition // traceable author statement /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // not recorded /// 0045786 // negative regulation of cell cycle // traceable author statement /// 0060707 // trophoblast giant cell differentiation // inferred from electronic annotation /// 0060707 // trophoblast giant cell differentiation // not recorded /// 0060806 // negative regulation of cell differentiation involved in embryonic placenta development // inferred from electronic annotation /// 0060806 // negative regulation of cell differentiation involved in embryonic placenta development // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1373220_at BI296489 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296489 /DB_XREF=gi:14960962 /DB_XREF=UI-R-CV2-cgr-g-06-0-UI.s1 /CLONE=UI-R-CV2-cgr-g-06-0-UI /FEA=EST /CNT=11 /TID=Rn.14707.1 /TIER=Stack /STK=9 /UG=Rn.14707 /UG_TITLE=ESTs BI296489 1373221_at BI278478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278478 /DB_XREF=gi:14925360 /DB_XREF=UI-R-CZ0-byh-b-05-0-UI.s1 /CLONE=UI-R-CZ0-byh-b-05-0-UI /FEA=EST /CNT=11 /TID=Rn.3004.1 /TIER=Stack /STK=9 /UG=Rn.3004 /UG_TITLE=ESTs BI278478 Diaphanous homolog 1 (Drosophila) Diaph1 307483 NM_001107393 0016043 // cellular component organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030041 // actin filament polymerization // not recorded /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded 1373222_at AI230271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230271 /DB_XREF=gi:3814158 /DB_XREF=EST226966 /CLONE=REMCU43 /FEA=EST /CNT=11 /TID=Rn.247.1 /TIER=Stack /STK=9 /UG=Rn.247 /UG_TITLE=ESTs, Highly similar to BETA-HEXOSAMINIDASE ALPHA CHAIN PRECURSOR (M.musculus) AI230271 hexosaminidase A Hexa 300757 NM_001004443 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006689 // ganglioside catabolic process // inferred from electronic annotation /// 0006689 // ganglioside catabolic process // not recorded /// 0007040 // lysosome organization // inferred from electronic annotation /// 0007040 // lysosome organization // not recorded /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0007628 // adult walking behavior // inferred from electronic annotation /// 0007628 // adult walking behavior // not recorded /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0019915 // lipid storage // inferred from electronic annotation /// 0019915 // lipid storage // not recorded /// 0019953 // sexual reproduction // inferred from electronic annotation /// 0019953 // sexual reproduction // not recorded /// 0030203 // glycosaminoglycan metabolic process // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // not recorded /// 0042552 // myelination // inferred from electronic annotation /// 0042552 // myelination // not recorded /// 0048667 // cell morphogenesis involved in neuron differentiation // not recorded /// 0050884 // neuromuscular process controlling posture // inferred from electronic annotation /// 0050884 // neuromuscular process controlling posture // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004563 // beta-N-acetylhexosaminidase activity // inferred from electronic annotation /// 0004563 // beta-N-acetylhexosaminidase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1373223_at AI101361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101361 /DB_XREF=gi:3706273 /DB_XREF=EST210650 /CLONE=RBRBM18 /FEA=EST /CNT=11 /TID=Rn.22383.1 /TIER=Stack /STK=9 /UG=Rn.22383 /UG_TITLE=ESTs AI101361 family with sequence similarity 171, member B Fam171b 499821 XM_001068767 /// XM_575160 1373224_at BI295550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295550 /DB_XREF=gi:14959110 /DB_XREF=UI-R-DK0-cev-f-11-0-UI.s1 /CLONE=UI-R-DK0-cev-f-11-0-UI /FEA=EST /CNT=11 /TID=Rn.24125.1 /TIER=Stack /STK=9 /UG=Rn.24125 /UG_TITLE=ESTs BI295550 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 St3gal4 363040 NM_203337 0006486 // protein glycosylation // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008373 // sialyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0047288 // monosialoganglioside sialyltransferase activity // inferred from direct assay 1373225_at AI102618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102618 /DB_XREF=gi:3704706 /DB_XREF=EST211907 /CLONE=REMBQ04 /FEA=EST /CNT=11 /TID=Rn.4067.2 /TIER=Stack /STK=9 /UG=Rn.4067 /UG_TITLE=ESTs AI102618 1373226_at BF400995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400995 /DB_XREF=gi:11388970 /DB_XREF=UI-R-CA0-bgi-c-11-0-UI.s1 /CLONE=UI-R-CA0-bgi-c-11-0-UI /FEA=EST /CNT=11 /TID=Rn.14609.1 /TIER=Stack /STK=9 /UG=Rn.14609 /UG_TITLE=ESTs BF400995 similar to hypothetical protein FLJ20245 RGD1308019 311795 NM_001107816 0051085 // chaperone mediated protein folding requiring cofactor // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1373227_at BE098851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098851 /DB_XREF=gi:8490721 /DB_XREF=UI-R-BJ1-ate-f-01-0-UI.s1 /CLONE=UI-R-BJ1-ate-f-01-0-UI /FEA=EST /CNT=11 /TID=Rn.2866.1 /TIER=Stack /STK=9 /UG=Rn.2866 /UG_TITLE=ESTs, Highly similar to JC7162 Golgi UDP-galactose transporter 1 - mouse (M.musculus) BE098851 solute carrier family 35, member A2 Slc35a2 100158233 NM_001127642 0006810 // transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0008643 // carbohydrate transport // not recorded /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0015780 // nucleotide-sugar transport // inferred from electronic annotation /// 0015785 // UDP-galactose transport // not recorded /// 0034219 // carbohydrate transmembrane transport // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0000139 // Golgi membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005338 // nucleotide-sugar transmembrane transporter activity // inferred from electronic annotation /// 0005351 // sugar:hydrogen symporter activity // inferred from electronic annotation /// 0005459 // UDP-galactose transmembrane transporter activity // not recorded 1373228_at BI288760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288760 /DB_XREF=gi:14945650 /DB_XREF=UI-R-DK0-cde-f-02-0-UI.s1 /CLONE=UI-R-DK0-cde-f-02-0-UI /FEA=EST /CNT=11 /TID=Rn.17086.1 /TIER=Stack /STK=9 /UG=Rn.17086 /UG_TITLE=ESTs BI288760 similar to D8Ertd354e protein RGD1560755 361165 XR_085644 /// XR_086050 1373229_at AI407946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407946 /DB_XREF=gi:4251450 /DB_XREF=EST236236 /CLONE=RPLDJ54 /FEA=EST /CNT=11 /TID=Rn.22053.1 /TIER=Stack /STK=9 /UG=Rn.22053 /UG_TITLE=ESTs AI407946 LSM12 homolog (S. cerevisiae) Lsm12 287731 NM_001105843 0005515 // protein binding // not recorded 1373230_at AI145851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145851 /DB_XREF=gi:3667650 /DB_XREF=UI-R-BT0-pz-e-04-0-UI.s1 /CLONE=UI-R-BT0-pz-e-04-0-UI /FEA=EST /CNT=10 /TID=Rn.28640.1 /TIER=Stack /STK=9 /UG=Rn.28640 /UG_TITLE=ESTs AI145851 nudix (nucleoside diphosphate linked moiety X)-type motif 18 Nudt18 361068 NM_001100732 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373231_at BG665102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665102 /DB_XREF=gi:13887024 /DB_XREF=DRABYD05 /CLONE=DRABYD05 /FEA=EST /CNT=10 /TID=Rn.23994.1 /TIER=Stack /STK=9 /UG=Rn.23994 /UG_TITLE=ESTs BG665102 OTU domain containing 5 Otud5 363452 NM_001037496 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1373232_at AI008975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008975 /DB_XREF=gi:4132974 /DB_XREF=EST203426 /CLONE=REMBG48 /FEA=EST /CNT=10 /TID=Rn.13869.1 /TIER=Stack /STK=9 /UG=Rn.13869 /UG_TITLE=ESTs, Weakly similar to NIDOGEN (R.norvegicus) AI008975 similar to nidogen 2 protein LOC302022 302022 NM_001127530 1373233_at AI013502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013502 /DB_XREF=gi:3227558 /DB_XREF=EST208177 /CLONE=RSPBM35 /FEA=EST /CNT=10 /TID=Rn.18012.1 /TIER=Stack /STK=9 /UG=Rn.18012 /UG_TITLE=ESTs AI013502 lipoma HMGIC fusion partner-like 2 Lhfpl2 294643 NM_001106402 1373234_at BI277492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277492 /DB_XREF=gi:14923420 /DB_XREF=UI-R-CY0-bxq-g-07-0-UI.s1 /CLONE=UI-R-CY0-bxq-g-07-0-UI /FEA=EST /CNT=10 /TID=Rn.34796.1 /TIER=Stack /STK=9 /UG=Rn.34796 /UG_TITLE=ESTs BI277492 1373235_at AA892370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892370 /DB_XREF=gi:4132155 /DB_XREF=EST196173 /CLONE=RKIAP62 /FEA=EST /CNT=10 /TID=Rn.4289.1 /TIER=Stack /STK=9 /UG=Rn.4289 /UG_TITLE=ESTs AA892370 Synapse associated protein 1 Syap1 302678 NM_001004253 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 1373236_at AI411422 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411422 /DB_XREF=gi:4254926 /DB_XREF=EST239716 /CLONE=RKIES46 /FEA=EST /CNT=10 /TID=Rn.16459.1 /TIER=Stack /STK=9 /UG=Rn.16459 /UG_TITLE=ESTs AI411422 phosphopantothenoylcysteine decarboxylase Ppcdc 363069 NM_001108763 0003824 // catalytic activity // inferred from electronic annotation 1373237_at BI281233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281233 /DB_XREF=gi:14930759 /DB_XREF=UI-R-CT0s-cat-h-11-0-UI.s1 /CLONE=UI-R-CT0s-cat-h-11-0-UI /FEA=EST /CNT=10 /TID=Rn.11730.1 /TIER=Stack /STK=9 /UG=Rn.11730 /UG_TITLE=ESTs BI281233 1373238_at AI234844 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234844 /DB_XREF=gi:3828350 /DB_XREF=EST231406 /CLONE=ROVCI54 /FEA=EST /CNT=10 /TID=Rn.23978.1 /TIER=Stack /STK=9 /UG=Rn.23978 /UG_TITLE=ESTs AI234844 transcriptional adaptor 1 (HFI1 homolog, yeast) like Tada1l 360874 NM_001037980 0006350 // transcription // inferred from electronic annotation /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0043966 // histone H3 acetylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0030914 // STAGA complex // inferred from electronic annotation /// 0030914 // STAGA complex // not recorded 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // not recorded 1373239_at BM390617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390617 /DB_XREF=gi:18190670 /DB_XREF=UI-R-CN1-cjr-a-22-0-UI.s1 /CLONE=UI-R-CN1-cjr-a-22-0-UI /FEA=EST /CNT=10 /TID=Rn.21976.1 /TIER=Stack /STK=9 /UG=Rn.21976 /UG_TITLE=ESTs BM390617 sorting nexin 33 Snx33 315696 NM_001127488 0007154 // cell communication // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1373240_at BI276935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276935 /DB_XREF=gi:14922324 /DB_XREF=UI-R-CW0-bxo-b-10-0-UI.s1 /CLONE=UI-R-CW0-bxo-b-10-0-UI /FEA=EST /CNT=10 /TID=Rn.12011.1 /TIER=Stack /STK=9 /UG=Rn.12011 /UG_TITLE=ESTs, Weakly similar to T24832 hypothetical protein T11F9.11 - Caenorhabditis elegans (C.elegans) BI276935 dehydrogenase/reductase (SDR family) member 3 Dhrs3 313689 NM_001037199 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1373241_at AW252569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252569 /DB_XREF=gi:6596160 /DB_XREF=UI-R-BJ0-add-a-10-0-UI.s1 /CLONE=UI-R-BJ0-add-a-10-0-UI /FEA=EST /CNT=10 /TID=Rn.22268.2 /TIER=Stack /STK=9 /UG=Rn.22268 /UG_TITLE=ESTs, Highly similar to NOF1 (H.sapiens) AW252569 1373242_at AW434020 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434020 /DB_XREF=gi:6965327 /DB_XREF=UI-R-BJ0p-afo-d-01-0-UI.s1 /CLONE=UI-R-BJ0p-afo-d-01-0-UI /FEA=EST /CNT=10 /TID=Rn.25148.1 /TIER=Stack /STK=9 /UG=Rn.25148 /UG_TITLE=ESTs, Highly similar to TLP1_MOUSE TATA BOX BINDING PROTEIN-LIKE PROTEIN 1 (TBP-LIKE PROTEIN 1) (21-KDA TBP-LIKE PROTEIN) (M.musculus) AW434020 TATA box binding protein-like 1 Tbpl1 689030 NM_001127201 0001675 // acrosome assembly // not recorded /// 0006235 // dTTP biosynthetic process // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007289 // spermatid nucleus differentiation // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373243_at BG378288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378288 /DB_XREF=gi:13302760 /DB_XREF=UI-R-CV1-bvq-c-10-0-UI.s1 /CLONE=UI-R-CV1-bvq-c-10-0-UI /FEA=EST /CNT=10 /TID=Rn.22202.1 /TIER=Stack /STK=9 /UG=Rn.22202 /UG_TITLE=ESTs, Moderately similar to PMVK_HUMAN PHOSPHOMEVALONATE KINASE (H.sapiens) BG378288 phosphomevalonate kinase Pmvk 310645 NM_001008352 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0008299 // isoprenoid biosynthetic process // inferred from direct assay /// 0016310 // phosphorylation // not recorded /// 0019287 // isopentenyl diphosphate biosynthetic process, mevalonate pathway // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0004631 // phosphomevalonate kinase activity // inferred from direct assay /// 0004631 // phosphomevalonate kinase activity // inferred from electronic annotation /// 0004631 // phosphomevalonate kinase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1373244_at AI412948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412948 /DB_XREF=gi:4256452 /DB_XREF=EST241248 /CLONE=RBRED31 /FEA=EST /CNT=10 /TID=Rn.20428.1 /TIER=Stack /STK=9 /UG=Rn.20428 /UG_TITLE=ESTs AI412948 transmembrane and ubiquitin-like domain containing 2 Tmub2 303567 NM_001031651 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1373245_at BE111752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111752 /DB_XREF=gi:8503857 /DB_XREF=UI-R-BJ1-avx-d-06-0-UI.s1 /CLONE=UI-R-BJ1-avx-d-06-0-UI /FEA=EST /CNT=10 /TID=Rn.11762.1 /TIER=Stack /STK=9 /UG=Rn.11762 /UG_TITLE=ESTs, Highly similar to PROCOLLAGEN ALPHA 1(IV) CHAIN PRECURSOR (M.musculus) BE111752 collagen, type IV, alpha 1 Col4a1 290905 NM_001135009 0030855 // epithelial cell differentiation // inferred from expression pattern 0005581 // collagen // inferred from electronic annotation /// 0005587 // collagen type IV // inferred from electronic annotation /// 0005587 // collagen type IV // not recorded /// 0005604 // basement membrane // not recorded /// 0005604 // basement membrane // inferred from electronic annotation 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0048407 // platelet-derived growth factor binding // inferred from electronic annotation /// 0048407 // platelet-derived growth factor binding // not recorded 1373246_at BF397920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397920 /DB_XREF=gi:11382905 /DB_XREF=UI-R-BS2-bef-b-12-0-UI.s1 /CLONE=UI-R-BS2-bef-b-12-0-UI /FEA=EST /CNT=10 /TID=Rn.22201.1 /TIER=Stack /STK=9 /UG=Rn.22201 /UG_TITLE=ESTs, Highly similar to RB6K MOUSE RABKINESIN-6 (M.musculus) BF397920 Kinesin family member 20A Kif20a 361308 NM_001108426 0007018 // microtubule-based movement // inferred from electronic annotation 0005654 // nucleoplasm // not recorded /// 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1373247_at AW435407 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435407 /DB_XREF=gi:6966714 /DB_XREF=UI-R-BJ0p-afu-b-04-0-UI.s1 /CLONE=UI-R-BJ0p-afu-b-04-0-UI /FEA=EST /CNT=10 /TID=Rn.12437.1 /TIER=Stack /STK=9 /UG=Rn.12437 /UG_TITLE=ESTs, Highly similar to BACE RAT BETA-SECRETASE PRECURSOR (R.norvegicus) AW435407 1373248_at BI292079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292079 /DB_XREF=gi:14952230 /DB_XREF=UI-R-DN0-ciu-o-22-0-UI.s1 /CLONE=UI-R-DN0-ciu-o-22-0-UI /FEA=EST /CNT=10 /TID=Rn.18507.1 /TIER=Stack /STK=9 /UG=Rn.18507 /UG_TITLE=ESTs BI292079 Similar to hypothetical protein FLJ20674 RGD1565800 304529 XM_001080115 /// XM_222215 1373249_at AA817861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817861 /DB_XREF=gi:4198385 /DB_XREF=UI-R-A0-ae-h-06-0-UI.s1 /CLONE=UI-R-A0-ae-h-06-0-UI /FEA=EST /CNT=10 /TID=Rn.1138.1 /TIER=Stack /STK=9 /UG=Rn.1138 /UG_TITLE=ESTs AA817861 ubiquitin-like 4 Ubl4 293864 NM_001106346 1373250_at AI229404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229404 /DB_XREF=gi:3813291 /DB_XREF=EST226099 /CLONE=RBRDH95 /FEA=EST /CNT=10 /TID=Rn.14943.1 /TIER=Stack /STK=9 /UG=Rn.14943 /UG_TITLE=ESTs AI229404 1373251_at BI289957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289957 /DB_XREF=gi:14948069 /DB_XREF=UI-R-DK0-cfq-b-12-0-UI.s1 /CLONE=UI-R-DK0-cfq-b-12-0-UI /FEA=EST /CNT=10 /TID=Rn.28848.1 /TIER=Stack /STK=9 /UG=Rn.28848 /UG_TITLE=ESTs BI289957 LysM, putative peptidoglycan-binding, domain containing 1 Lysmd1 499671 NM_001024302 0016998 // cell wall macromolecule catabolic process // inferred from electronic annotation 1373252_at AI411930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411930 /DB_XREF=gi:4255434 /DB_XREF=EST240224 /CLONE=RKIER51 /FEA=EST /CNT=10 /TID=Rn.19802.2 /TIER=Stack /STK=9 /UG=Rn.19802 /UG_TITLE=ESTs, Moderately similar to T13963 formin related protein, lymphocyte specific - mouse (M.musculus) AI411930 Similar to formin-like 3 protein LOC300225 300225 XR_005956 /// XR_085889 1373253_at BE111646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111646 /DB_XREF=gi:8503751 /DB_XREF=UI-R-BJ1-avv-b-11-0-UI.s1 /CLONE=UI-R-BJ1-avv-b-11-0-UI /FEA=EST /CNT=10 /TID=Rn.18284.1 /TIER=Stack /STK=9 /UG=Rn.18284 /UG_TITLE=ESTs, Weakly similar to ACBP RAT ACYL-COA-BINDING PROTEIN (R.norvegicus) BE111646 acyl-Coenzyme A binding domain containing 4 Acbd4 303577 NM_001012013 0000062 // acyl-CoA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1373254_at BI282479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282479 /DB_XREF=gi:14933287 /DB_XREF=UI-R-DD0-bzx-c-10-0-UI.s1 /CLONE=UI-R-DD0-bzx-c-10-0-UI /FEA=EST /CNT=10 /TID=Rn.12461.1 /TIER=Stack /STK=9 /UG=Rn.12461 /UG_TITLE=ESTs BI282479 keratin 10 Krt10 450225 NM_001008804 0005882 // intermediate filament // inferred from electronic annotation /// 0045095 // keratin filament // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373255_at BE097663 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097663 /DB_XREF=gi:8488594 /DB_XREF=UI-R-BO1-aqa-c-08-0-UI.s1 /CLONE=UI-R-BO1-aqa-c-08-0-UI /FEA=EST /CNT=10 /TID=Rn.8614.4 /TIER=Stack /STK=9 /UG=Rn.8614 /LL=79256 /UG_GENE=Hnrpd /UG_TITLE=RNA binding protein p45AUF1 BE097663 1373256_at BM391119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391119 /DB_XREF=gi:18191172 /DB_XREF=UI-R-CN1-cjr-l-14-0-UI.s1 /CLONE=UI-R-CN1-cjr-l-14-0-UI /FEA=EST /CNT=10 /TID=Rn.23678.1 /TIER=Stack /STK=9 /UG=Rn.23678 /UG_TITLE=ESTs, Moderately similar to CHD3 (H.sapiens) BM391119 chromodomain helicase DNA binding protein 3 Chd3 303241 XM_001079343 /// XM_220602 0006333 // chromatin assembly or disassembly // not recorded /// 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0016581 // NuRD complex // not recorded /// 0016585 // chromatin remodeling complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373257_at AI412969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412969 /DB_XREF=gi:4256473 /DB_XREF=EST241269 /CLONE=RBREC31 /FEA=EST /CNT=10 /TID=Rn.18891.1 /TIER=Stack /STK=9 /UG=Rn.18891 /UG_TITLE=ESTs, Moderately similar to 2007396B phosphoprotein ARPP-21 (H.sapiens) AI412969 cyclic AMP-regulated phosphoprotein Arpp-21 363153 NM_001135045 /// NM_001135046 0034605 // cellular response to heat // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation 1373258_at AI169359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169359 /DB_XREF=gi:3705667 /DB_XREF=EST215202 /CLONE=RKIBR28 /FEA=EST /CNT=10 /TID=Rn.25087.1 /TIER=Stack /STK=9 /UG=Rn.25087 /UG_TITLE=ESTs, Weakly similar to CATL RAT CATHEPSIN L PRECURSOR (R.norvegicus) AI169359 cathepsin F Ctsf 361704 NM_001034110 0006508 // proteolysis // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1373259_at BI300311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300311 /DB_XREF=gi:14976591 /DB_XREF=UI-R-CV2-cid-e-06-0-UI.s1 /CLONE=UI-R-CV2-cid-e-06-0-UI /FEA=EST /CNT=10 /TID=Rn.79831.1 /TIER=Stack /STK=9 /UG=Rn.79831 /UG_TITLE=ESTs BI300311 1373260_at AI412606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412606 /DB_XREF=gi:4256110 /DB_XREF=EST240905 /CLONE=RBRDK37 /FEA=EST /CNT=10 /TID=Rn.31284.1 /TIER=Stack /STK=9 /UG=Rn.31284 /UG_TITLE=ESTs, Weakly similar to CERL RAT CEREBELLIN-LIKE GLYCOPROTEIN (R.norvegicus) AI412606 similar to C1q domain containing 1 isoform 1 LOC686779 686779 XR_085828 1373261_at BF388657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388657 /DB_XREF=gi:11373481 /DB_XREF=UI-R-BS2-bdb-a-09-0-UI.s1 /CLONE=UI-R-BS2-bdb-a-09-0-UI /FEA=EST /CNT=10 /TID=Rn.63008.1 /TIER=Stack /STK=9 /UG=Rn.63008 /UG_TITLE=ESTs BF388657 1373262_at AI102745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102745 /DB_XREF=gi:3704735 /DB_XREF=EST212034 /CLONE=REMBS01 /FEA=EST /CNT=10 /TID=Rn.16324.1 /TIER=Stack /STK=9 /UG=Rn.16324 /UG_TITLE=ESTs AI102745 similar to 2310014H01Rik protein RGD1309543 361790 NM_001126287 1373263_at AW523737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523737 /DB_XREF=gi:7166122 /DB_XREF=UI-R-BO0-aih-e-09-0-UI.s1 /CLONE=UI-R-BO0-aih-e-09-0-UI /FEA=EST /CNT=10 /TID=Rn.14606.1 /TIER=Stack /STK=9 /UG=Rn.14606 /UG_TITLE=ESTs, Weakly similar to T24597 hypothetical protein T06E6.1 - Caenorhabditis elegans (C.elegans) AW523737 WD repeat domain 74 Wdr74 690229 NM_001109569 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation 1373264_at BE110658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110658 /DB_XREF=gi:8502763 /DB_XREF=UI-R-BJ1-avu-e-06-0-UI.s1 /CLONE=UI-R-BJ1-avu-e-06-0-UI /FEA=EST /CNT=10 /TID=Rn.12377.1 /TIER=Stack /STK=9 /UG=Rn.12377 /UG_TITLE=ESTs BE110658 zinc finger, BED-type containing 3 Zbed3 361881 NM_001025729 0003677 // DNA binding // inferred from electronic annotation 1373265_at BM383832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383832 /DB_XREF=gi:18183885 /DB_XREF=UI-R-DM1-ckb-p-15-0-UI.s1 /CLONE=UI-R-DM1-ckb-p-15-0-UI /FEA=EST /CNT=10 /TID=Rn.35034.1 /TIER=Stack /STK=9 /UG=Rn.35034 /UG_TITLE=ESTs BM383832 exocyst complex component 6B Exoc6b 500233 NM_001109246 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation 0000145 // exocyst // inferred from electronic annotation 1373266_at BG380826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380826 /DB_XREF=gi:13305298 /DB_XREF=UI-R-CT0-bub-h-03-0-UI.s1 /CLONE=UI-R-CT0-bub-h-03-0-UI /FEA=EST /CNT=10 /TID=Rn.1569.1 /TIER=Stack /STK=9 /UG=Rn.1569 /UG_TITLE=ESTs BG380826 family with sequence similarity 107, member A /// downregulated in renal cell carcinoma-like Fam107a /// LOC100364831 100364831 /// 361018 NM_001025129 /// XM_002725042 /// XM_002725043 0001558 // regulation of cell growth // inferred from electronic annotation /// 0001558 // regulation of cell growth // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373267_at AW527403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527403 /DB_XREF=gi:7169817 /DB_XREF=UI-R-BO1-ajt-a-03-0-UI.s1 /CLONE=UI-R-BO1-ajt-a-03-0-UI /FEA=EST /CNT=10 /TID=Rn.1163.1 /TIER=Stack /STK=9 /UG=Rn.1163 /UG_TITLE=ESTs, Weakly similar to S58653 hypothetical protein YFR024c-a - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AW527403 SH3 domain containing, Ysc84-like 1 (S. cerevisiae) Sh3yl1 362724 NM_001108705 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373268_at BM383953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383953 /DB_XREF=gi:18184006 /DB_XREF=UI-R-DM1-ckc-i-11-0-UI.s1 /CLONE=UI-R-DM1-ckc-i-11-0-UI /FEA=EST /CNT=10 /TID=Rn.37684.1 /TIER=Stack /STK=9 /UG=Rn.37684 /UG_TITLE=ESTs BM383953 microtubule-associated protein 4 Map4 367171 NM_001024278 0007026 // negative regulation of microtubule depolymerization // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0005515 // protein binding // not recorded 1373269_at AI407751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407751 /DB_XREF=gi:4251255 /DB_XREF=EST236041 /CLONE=ROVEA21 /FEA=EST /CNT=10 /TID=Rn.2560.1 /TIER=Stack /STK=9 /UG=Rn.2560 /UG_TITLE=ESTs AI407751 1373270_at AI233288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233288 /DB_XREF=gi:3817168 /DB_XREF=EST229976 /CLONE=RKIDD23 /FEA=EST /CNT=10 /TID=Rn.12436.1 /TIER=Stack /STK=9 /UG=Rn.12436 /UG_TITLE=ESTs AI233288 WD repeat domain, phosphoinositide interacting 1 Wipi1 303630 NM_001127297 0006914 // autophagy // inferred from electronic annotation /// 0006914 // autophagy // not recorded /// 0048203 // vesicle targeting, trans-Golgi to endosome // inferred from electronic annotation /// 0048203 // vesicle targeting, trans-Golgi to endosome // not recorded 0000407 // pre-autophagosomal structure // not recorded /// 0000407 // pre-autophagosomal structure // inferred from electronic annotation /// 0000421 // autophagic vacuole membrane // inferred from electronic annotation /// 0000421 // autophagic vacuole membrane // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0010008 // endosome membrane // not recorded /// 0034045 // pre-autophagosomal structure membrane // inferred from electronic annotation /// 0034045 // pre-autophagosomal structure membrane // not recorded 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0030331 // estrogen receptor binding // inferred from electronic annotation /// 0030331 // estrogen receptor binding // not recorded /// 0032266 // phosphatidylinositol-3-phosphate binding // inferred from electronic annotation /// 0032266 // phosphatidylinositol-3-phosphate binding // not recorded /// 0050681 // androgen receptor binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // not recorded 1373271_at AI104034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104034 /DB_XREF=gi:3704904 /DB_XREF=EST213323 /CLONE=RHEBW47 /FEA=EST /CNT=10 /TID=Rn.22264.1 /TIER=Stack /STK=9 /UG=Rn.22264 /UG_TITLE=ESTs, Weakly similar to T31636 hypothetical protein Y57A10A.n - Caenorhabditis elegans (C.elegans) AI104034 trafficking protein particle complex 5 Trappc5 363858 NM_001108850 0006182 // cGMP biosynthetic process // inferred from electronic annotation 0030008 // TRAPP complex // inferred from electronic annotation /// 0030008 // TRAPP complex // not recorded 0004383 // guanylate cyclase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0020037 // heme binding // inferred from electronic annotation 1373272_at AI009219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009219 /DB_XREF=gi:3223051 /DB_XREF=EST203670 /CLONE=REMBL26 /FEA=EST /CNT=10 /TID=Rn.8214.1 /TIER=Stack /STK=9 /UG=Rn.8214 /UG_TITLE=ESTs AI009219 pleckstrin homology domain containing, family A member 5 Plekha5 246237 XM_001073627 /// XM_342781 0005515 // protein binding // inferred from electronic annotation 1373273_at BM384975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384975 /DB_XREF=gi:18185028 /DB_XREF=UI-R-CN1-cjl-p-08-0-UI.s2 /CLONE=UI-R-CN1-cjl-p-08-0-UI /FEA=EST /CNT=10 /TID=Rn.18104.1 /TIER=Stack /STK=9 /UG=Rn.18104 /UG_TITLE=ESTs BM384975 PRP38 pre-mRNA processing factor 38 (yeast) domain containing A Prpf38a 298374 NM_001106672 1373274_at BI282039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282039 /DB_XREF=gi:14932391 /DB_XREF=UI-R-CU0s-cbv-g-06-0-UI.s1 /CLONE=UI-R-CU0s-cbv-g-06-0-UI /FEA=EST /CNT=10 /TID=Rn.48039.1 /TIER=Stack /STK=9 /UG=Rn.48039 /UG_TITLE=ESTs, Weakly similar to GLUTATHIONE REDUCTASE (M.musculus) BI282039 thioredoxin reductase 3 Txnrd3 297437 NM_001106609 /// NM_001184712 0006749 // glutathione metabolic process // not recorded /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005792 // microsome // not recorded 0004791 // thioredoxin-disulfide reductase activity // inferred from electronic annotation /// 0004791 // thioredoxin-disulfide reductase activity // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from electronic annotation 1373275_at BI299913 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299913 /DB_XREF=gi:14976193 /DB_XREF=UI-R-CV2-chy-g-04-0-UI.s1 /CLONE=UI-R-CV2-chy-g-04-0-UI /FEA=EST /CNT=10 /TID=Rn.66218.1 /TIER=Stack /STK=9 /UG=Rn.66218 /UG_TITLE=ESTs BI299913 1373276_at BM390162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390162 /DB_XREF=gi:18190215 /DB_XREF=UI-R-CN1-cjp-l-22-0-UI.s1 /CLONE=UI-R-CN1-cjp-l-22-0-UI /FEA=EST /CNT=10 /TID=Rn.973.2 /TIER=Stack /STK=9 /UG=Rn.973 /UG_TITLE=ESTs, Highly similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 (R.norvegicus) BM390162 similar to S100 calcium-binding protein, ventral prostate RGD1562234 499657 NM_001109187 0005509 // calcium ion binding // inferred from electronic annotation 1373277_at BG373457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373457 /DB_XREF=gi:13269959 /DB_XREF=UI-R-CV1-bry-f-01-0-UI.s1 /CLONE=UI-R-CV1-bry-f-01-0-UI /FEA=EST /CNT=10 /TID=Rn.15627.1 /TIER=Stack /STK=9 /UG=Rn.15627 /UG_TITLE=ESTs, Weakly similar to YJ05_CAEEL HYPOTHETICAL 85.1 KD NUCLEASE C41D11.5 (C.elegans) BG373457 TM2 domain containing 3 Tm2d3 292995 NM_001106267 1373278_at BM391303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391303 /DB_XREF=gi:18191356 /DB_XREF=UI-R-DY0-ckq-h-23-0-UI.s1 /CLONE=UI-R-DY0-ckq-h-23-0-UI /FEA=EST /CNT=19 /TID=Rn.18426.1 /TIER=Stack /STK=9 /UG=Rn.18426 /UG_TITLE=ESTs BM391303 1373279_at BI275726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275726 /DB_XREF=gi:14919922 /DB_XREF=UI-R-CW0-bwm-h-11-0-UI.s1 /CLONE=UI-R-CW0-bwm-h-11-0-UI /FEA=EST /CNT=12 /TID=Rn.36076.1 /TIER=Stack /STK=9 /UG=Rn.36076 /UG_TITLE=ESTs BI275726 catenin, beta-interacting protein 1 Ctnnbip1 503000 NM_001173388 /// XM_001075213 /// XM_001078135 /// XM_002729566 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0002528 // regulation of vascular permeability involved in acute inflammatory response // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0031333 // negative regulation of protein complex assembly // not recorded /// 0032091 // negative regulation of protein binding // not recorded /// 0043392 // negative regulation of DNA binding // not recorded /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0045657 // positive regulation of monocyte differentiation // not recorded /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0048662 // negative regulation of smooth muscle cell proliferation // not recorded /// 0060633 // negative regulation of transcription initiation from RNA polymerase II promoter // not recorded /// 0072201 // negative regulation of mesenchymal cell proliferation // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0034747 // Axin-APC-beta-catenin-GSK3B complex // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0070016 // armadillo repeat domain binding // not recorded 1373280_at AA848324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848324 /DB_XREF=gi:4131631 /DB_XREF=EST191084 /CLONE=RHEAL48 /FEA=EST /CNT=12 /TID=Rn.785.1 /TIER=Stack /STK=9 /UG=Rn.785 /UG_TITLE=ESTs, Weakly similar to JC5521 TATA-binding protein-interacting protein 49 - rat (R.norvegicus) AA848324 RuvB-like 2 (E. coli) Ruvbl2 292907 NM_001025405 0006281 // DNA repair // inferred from electronic annotation /// 0043967 // histone H4 acetylation // inferred from electronic annotation /// 0043967 // histone H4 acetylation // not recorded /// 0043968 // histone H2A acetylation // inferred from electronic annotation /// 0043968 // histone H2A acetylation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded /// 0035267 // NuA4 histone acetyltransferase complex // inferred from electronic annotation /// 0035267 // NuA4 histone acetyltransferase complex // not recorded /// 0071339 // MLL1 complex // inferred from electronic annotation /// 0071339 // MLL1 complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003678 // DNA helicase activity // inferred from electronic annotation /// 0003678 // DNA helicase activity // not recorded /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1373281_at BM386421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386421 /DB_XREF=gi:18186474 /DB_XREF=UI-R-CN1-cjf-n-14-0-UI.s1 /CLONE=UI-R-CN1-cjf-n-14-0-UI /FEA=EST /CNT=11 /TID=Rn.18534.1 /TIER=Stack /STK=9 /UG=Rn.18534 /UG_TITLE=ESTs, Weakly similar to T16621 hypothetical protein K11G12.6 - Caenorhabditis elegans (C.elegans) BM386421 lipase maturation factor 1 Lmf1 360495 XM_001060521 /// XM_340769 0009306 // protein secretion // not recorded 1373282_at AI406494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406494 /DB_XREF=gi:4249998 /DB_XREF=EST234780 /CLONE=RBRDL50 /FEA=EST /CNT=11 /TID=Rn.8763.1 /TIER=Stack /STK=9 /UG=Rn.8763 /UG_TITLE=ESTs, Weakly similar to TXTP RAT TRICARBOXYLATE TRANSPORT PROTEIN PRECURSOR (R.norvegicus) AI406494 similar to mitochondrial carrier protein MGC4399 LOC691431 691431 NM_001127574 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1373283_at BE113158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113158 /DB_XREF=gi:8505263 /DB_XREF=UI-R-BJ1-awc-b-11-0-UI.s1 /CLONE=UI-R-BJ1-awc-b-11-0-UI /FEA=EST /CNT=10 /TID=Rn.14096.1 /TIER=Stack /STK=9 /UG=Rn.14096 /UG_TITLE=ESTs BE113158 1373284_at AI176607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176607 /DB_XREF=gi:3727245 /DB_XREF=EST220196 /CLONE=ROVBU46 /FEA=EST /CNT=10 /TID=Rn.14087.1 /TIER=Stack /STK=9 /UG=Rn.14087 /UG_TITLE=ESTs AI176607 salvador homolog 1 (Drosophila) Sav1 299116 NM_001097581 0007165 // signal transduction // inferred from electronic annotation /// 0035329 // hippo signaling cascade // not recorded /// 0035329 // hippo signaling cascade // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1373285_at AI406624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406624 /DB_XREF=gi:4250128 /DB_XREF=EST234911 /CLONE=RBRDN62 /FEA=EST /CNT=10 /TID=Rn.1395.1 /TIER=Stack /STK=9 /UG=Rn.1395 /UG_TITLE=ESTs AI406624 1373286_at AA875261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875261 /DB_XREF=gi:4231139 /DB_XREF=UI-R-E0-ce-a-06-0-UI.s1 /CLONE=UI-R-E0-ce-a-06-0-UI /FEA=EST /CNT=10 /TID=Rn.2851.1 /TIER=Stack /STK=9 /UG=Rn.2851 /UG_TITLE=ESTs AA875261 filamin binding LIM protein 1 Fblim1 362650 NM_001007554 0006397 // mRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373287_at BE113298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113298 /DB_XREF=gi:8505443 /DB_XREF=UI-R-BJ1-awe-c-01-0-UI.s1 /CLONE=UI-R-BJ1-awe-c-01-0-UI /FEA=EST /CNT=10 /TID=Rn.18505.1 /TIER=Stack /STK=9 /UG=Rn.18505 /UG_TITLE=ESTs BE113298 atonal homolog 8 (Drosophila) Atoh8 500200 NM_001109241 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0030528 // transcription regulator activity // inferred from electronic annotation 1373288_at BG373023 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373023 /DB_XREF=gi:13269560 /DB_XREF=UI-R-CV1-bsb-f-06-0-UI.s1 /CLONE=UI-R-CV1-bsb-f-06-0-UI /FEA=EST /CNT=10 /TID=Rn.39696.1 /TIER=Stack /STK=9 /UG=Rn.39696 /UG_TITLE=ESTs BG373023 suppression of tumorigenicity 5 St5 308944 NM_001107547 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded 0005515 // protein binding // not recorded 1373289_at BI281935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281935 /DB_XREF=gi:14932179 /DB_XREF=UI-R-CU0s-cbu-d-06-0-UI.s1 /CLONE=UI-R-CU0s-cbu-d-06-0-UI /FEA=EST /CNT=10 /TID=Rn.19805.1 /TIER=Stack /STK=9 /UG=Rn.19805 /UG_TITLE=ESTs BI281935 ankyrin repeat and SOCS box-containing 8 Asb8 315287 NM_001108109 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1373290_at AI012781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012781 /DB_XREF=gi:3226613 /DB_XREF=EST207232 /CLONE=RPLBB55 /FEA=EST /CNT=10 /TID=Rn.9027.1 /TIER=Stack /STK=9 /UG=Rn.9027 /UG_TITLE=ESTs, Highly similar to EZH2 MOUSE ENHANCER OF ZESTE HOMOLOG 2 (M.musculus) AI012781 enhancer of zeste homolog 2 (Drosophila) Ezh2 312299 NM_001134979 0016571 // histone methylation // not recorded /// 0016571 // histone methylation // inferred from electronic annotation /// 0048387 // negative regulation of retinoic acid receptor signaling pathway // not recorded /// 0051154 // negative regulation of striated muscle cell differentiation // not recorded /// 0051154 // negative regulation of striated muscle cell differentiation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0035098 // ESC/E(Z) complex // not recorded /// 0035098 // ESC/E(Z) complex // inferred from electronic annotation /// 0045120 // pronucleus // not recorded /// 0045120 // pronucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0042054 // histone methyltransferase activity // not recorded /// 0042054 // histone methyltransferase activity // inferred from electronic annotation 1373291_at AI176713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176713 /DB_XREF=gi:3727351 /DB_XREF=EST220306 /CLONE=ROVBV83 /FEA=EST /CNT=10 /TID=Rn.7255.1 /TIER=Stack /STK=9 /UG=Rn.7255 /UG_TITLE=ESTs AI176713 1373292_at AI176553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176553 /DB_XREF=gi:3727191 /DB_XREF=EST220140 /CLONE=ROVBT71 /FEA=EST /CNT=10 /TID=Rn.18541.1 /TIER=Stack /STK=9 /UG=Rn.18541 /UG_TITLE=ESTs AI176553 similar to KIAA0339 protein RGD1311624 309001 XR_005469 /// XR_009622 0005634 // nucleus // inferred from electronic annotation /// 0035097 // histone methyltransferase complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1373293_at BM392010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392010 /DB_XREF=gi:18192063 /DB_XREF=UI-R-DO1-cmk-i-10-0-UI.s1 /CLONE=UI-R-DO1-cmk-i-10-0-UI /FEA=EST /CNT=10 /TID=Rn.41256.1 /TIER=Stack /STK=9 /UG=Rn.41256 /UG_TITLE=ESTs BM392010 large subunit GTPase 1 homolog (S. cerevisiae) Lsg1 288029 NM_001013421 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0051168 // nuclear export // not recorded /// 0051168 // nuclear export // inferred from sequence or structural similarity /// 0051168 // nuclear export // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0015030 // Cajal body // not recorded /// 0015030 // Cajal body // inferred from sequence or structural similarity /// 0015030 // Cajal body // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation 1373294_at AI234292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234292 /DB_XREF=gi:3818172 /DB_XREF=EST230980 /CLONE=RLUCZ19 /FEA=EST /CNT=10 /TID=Rn.24797.1 /TIER=Stack /STK=9 /UG=Rn.24797 /UG_TITLE=ESTs AI234292 COMM domain containing 8 Commd8 289603 NM_001106004 0005515 // protein binding // not recorded 1373295_at BI281889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281889 /DB_XREF=gi:14932089 /DB_XREF=UI-R-CU0s-cbt-g-06-0-UI.s1 /CLONE=UI-R-CU0s-cbt-g-06-0-UI /FEA=EST /CNT=10 /TID=Rn.15899.1 /TIER=Stack /STK=9 /UG=Rn.15899 /UG_TITLE=ESTs BI281889 oligonucleotide/oligosaccharide-binding fold containing 1 Obfc1 294025 NM_001011943 0000723 // telomere maintenance // not recorded /// 0000723 // telomere maintenance // inferred from sequence or structural similarity /// 0000723 // telomere maintenance // inferred from electronic annotation /// 0010833 // telomere maintenance via telomere lengthening // not recorded /// 0010833 // telomere maintenance via telomere lengthening // inferred from sequence or structural similarity /// 0010833 // telomere maintenance via telomere lengthening // inferred from electronic annotation 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0000784 // nuclear chromosome, telomeric region // not recorded /// 0000784 // nuclear chromosome, telomeric region // inferred from sequence or structural similarity /// 0000784 // nuclear chromosome, telomeric region // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0070188 // Stn1-Ten1 complex // inferred from electronic annotation /// 0070188 // Stn1-Ten1 complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // not recorded /// 0003697 // single-stranded DNA binding // inferred from sequence or structural similarity /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043047 // single-stranded telomeric DNA binding // not recorded /// 0043047 // single-stranded telomeric DNA binding // inferred from sequence or structural similarity /// 0043047 // single-stranded telomeric DNA binding // inferred from electronic annotation 1373296_a_at AA800001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800001 /DB_XREF=gi:2862956 /DB_XREF=EST189498 /CLONE=RHEAI15 /FEA=EST /CNT=9 /TID=Rn.6268.1 /TIER=Stack /STK=9 /UG=Rn.6268 /UG_TITLE=ESTs, Weakly similar to SPBP RAT PROSTATIC SPERMINE-BINDING PROTEIN PRECURSOR (R.norvegicus) AA800001 similar to RIKEN cDNA 3200002M19 RGD1311634 293155 NM_001170435 /// XM_001067917 /// XM_002725701 /// XM_002725702 /// XM_002725703 /// XM_002728798 /// XM_215003 1373297_at BI296690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296690 /DB_XREF=gi:14961369 /DB_XREF=UI-R-CV2-cgv-b-11-0-UI.s1 /CLONE=UI-R-CV2-cgv-b-11-0-UI /FEA=EST /CNT=9 /TID=Rn.33878.1 /TIER=Stack /STK=9 /UG=Rn.33878 /UG_TITLE=ESTs BI296690 1373298_at BI288011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288011 /DB_XREF=gi:14944174 /DB_XREF=UI-R-BT1-bni-a-01-0-UI.s2 /CLONE=UI-R-BT1-bni-a-01-0-UI /FEA=EST /CNT=9 /TID=Rn.29161.1 /TIER=Stack /STK=9 /UG=Rn.29161 /UG_TITLE=ESTs BI288011 1373299_at BI295816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295816 /DB_XREF=gi:14959642 /DB_XREF=UI-R-DK0-cfb-a-04-0-UI.s1 /CLONE=UI-R-DK0-cfb-a-04-0-UI /FEA=EST /CNT=9 /TID=Rn.2847.1 /TIER=Stack /STK=9 /UG=Rn.2847 /UG_TITLE=ESTs, Weakly similar to FAF1 MOUSE FAF1 PROTEIN (M.musculus) BI295816 UBX domain protein 1 Ubxn1 293719 NM_001034829 0031397 // negative regulation of protein ubiquitination // not recorded /// 0031397 // negative regulation of protein ubiquitination // inferred from sequence or structural similarity /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity 0000502 // proteasome complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0031593 // polyubiquitin binding // not recorded /// 0031593 // polyubiquitin binding // inferred from sequence or structural similarity /// 0051117 // ATPase binding // not recorded 1373300_at BI296249 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296249 /DB_XREF=gi:14960501 /DB_XREF=UI-R-DK0-cey-b-02-0-UI.s1 /CLONE=UI-R-DK0-cey-b-02-0-UI /FEA=EST /CNT=9 /TID=Rn.9152.1 /TIER=Stack /STK=9 /UG=Rn.9152 /UG_TITLE=ESTs BI296249 similar to hypothetical protein DKFZp761D0211 RGD1306151 362455 NM_001108652 1373301_at BE113133 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113133 /DB_XREF=gi:8505238 /DB_XREF=UI-R-BJ1-awb-h-08-0-UI.s1 /CLONE=UI-R-BJ1-awb-h-08-0-UI /FEA=EST /CNT=9 /TID=Rn.41373.1 /TIER=Stack /STK=9 /UG=Rn.41373 /UG_TITLE=ESTs BE113133 protein phosphatase 1, regulatory (inhibitor) subunit 13B Ppp1r13b 314465 NM_001108062 0006917 // induction of apoptosis // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded 1373302_at BM387041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387041 /DB_XREF=gi:18187094 /DB_XREF=UI-R-CN1-cji-c-04-0-UI.s1 /CLONE=UI-R-CN1-cji-c-04-0-UI /FEA=EST /CNT=9 /TID=Rn.6387.1 /TIER=Stack /STK=9 /UG=Rn.6387 /UG_TITLE=ESTs BM387041 alkaline ceramidase 2 Acer2 313339 NM_001107943 0001953 // negative regulation of cell-matrix adhesion // not recorded /// 0006672 // ceramide metabolic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0032526 // response to retinoic acid // not recorded /// 0033629 // negative regulation of cell adhesion mediated by integrin // not recorded /// 0046512 // sphingosine biosynthetic process // not recorded /// 0090285 // negative regulation of protein glycosylation in Golgi // not recorded 0000139 // Golgi membrane // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // not recorded 0016787 // hydrolase activity // inferred from electronic annotation /// 0016811 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides // inferred from electronic annotation /// 0017040 // ceramidase activity // not recorded 1373303_at BM383325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383325 /DB_XREF=gi:18183378 /DB_XREF=UI-R-CV2-cia-a-03-0-UI.s2 /CLONE=UI-R-CV2-cia-a-03-0-UI /FEA=EST /CNT=9 /TID=Rn.73034.1 /TIER=Stack /STK=9 /UG=Rn.73034 /UG_TITLE=ESTs, Weakly similar to SRrp129 (H.sapiens) BM383325 splicing factor, arginine/serine-rich 2, interacting protein Sfrs2ip 312030 XM_002726968 /// XM_231361 0000245 // spliceosome assembly // not recorded /// 0000375 // RNA splicing, via transesterification reactions // not recorded /// 0008380 // RNA splicing // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373304_at BM392002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392002 /DB_XREF=gi:18192055 /DB_XREF=UI-R-DO1-cmk-g-16-0-UI.s1 /CLONE=UI-R-DO1-cmk-g-16-0-UI /FEA=EST /CNT=9 /TID=Rn.36938.1 /TIER=Stack /STK=9 /UG=Rn.36938 /UG_TITLE=ESTs, Moderately similar to NBPX_MOUSE Nucleotide binding protein (NBP) (M.musculus) BM392002 Coenzyme A synthase Coasy 287711 NM_001006954 0008152 // metabolic process // not recorded /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0015937 // coenzyme A biosynthetic process // inferred from electronic annotation /// 0015937 // coenzyme A biosynthetic process // not recorded /// 0016310 // phosphorylation // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004140 // dephospho-CoA kinase activity // inferred from electronic annotation /// 0004140 // dephospho-CoA kinase activity // not recorded /// 0004595 // pantetheine-phosphate adenylyltransferase activity // inferred from electronic annotation /// 0004595 // pantetheine-phosphate adenylyltransferase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1373305_at BI280349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280349 /DB_XREF=gi:14929035 /DB_XREF=UI-R-DE0-cag-h-03-0-UI.s1 /CLONE=UI-R-DE0-cag-h-03-0-UI /FEA=EST /CNT=9 /TID=Rn.2645.1 /TIER=Stack /STK=9 /UG=Rn.2645 /UG_TITLE=ESTs, Highly similar to SNX4_HUMAN SORTING NEXIN 4 (H.sapiens) BI280349 sorting nexin 4 Snx4 360725 NM_001127550 0007154 // cell communication // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1373306_at BM386212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386212 /DB_XREF=gi:18186265 /DB_XREF=UI-R-CN1-cjf-c-12-0-UI.s1 /CLONE=UI-R-CN1-cjf-c-12-0-UI /FEA=EST /CNT=9 /TID=Rn.18145.1 /TIER=Stack /STK=9 /UG=Rn.18145 /UG_TITLE=ESTs BM386212 solute carrier family 25, member 44 Slc25a44 365841 NM_001108947 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1373307_at BE111711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111711 /DB_XREF=gi:8503816 /DB_XREF=UI-R-BJ1-avv-h-07-0-UI.s1 /CLONE=UI-R-BJ1-avv-h-07-0-UI /FEA=EST /CNT=9 /TID=Rn.25237.1 /TIER=Stack /STK=9 /UG=Rn.25237 /UG_TITLE=ESTs BE111711 MON1 homolog A (yeast) Mon1a 315999 NM_001126284 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // not recorded /// 0009306 // protein secretion // inferred from electronic annotation /// 0009306 // protein secretion // not recorded /// 0015031 // protein transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation 0005515 // protein binding // not recorded 1373308_at BI296563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296563 /DB_XREF=gi:14961110 /DB_XREF=UI-R-CV2-cgs-f-08-0-UI.s1 /CLONE=UI-R-CV2-cgs-f-08-0-UI /FEA=EST /CNT=9 /TID=Rn.73030.1 /TIER=Stack /STK=9 /UG=Rn.73030 /UG_TITLE=ESTs, Weakly similar to SH31_RAT SH3-CONTAINING GRB2-LIKE PROTEIN 1 (SH3 DOMAIN PROTEIN 2B) (SH3P8) (R.norvegicus) BI296563 small G protein signaling modulator 3 Sgsm3 362963 NM_198787 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// 0032483 // regulation of Rab protein signal transduction // not recorded /// 0032483 // regulation of Rab protein signal transduction // inferred from sequence or structural similarity /// 0032483 // regulation of Rab protein signal transduction // inferred from electronic annotation /// 0032486 // Rap protein signal transduction // not recorded /// 0032486 // Rap protein signal transduction // inferred from sequence or structural similarity /// 0032486 // Rap protein signal transduction // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005921 // gap junction // inferred from electronic annotation /// 0005921 // gap junction // not recorded 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017137 // Rab GTPase binding // not recorded /// 0017137 // Rab GTPase binding // inferred from sequence or structural similarity /// 0017137 // Rab GTPase binding // inferred from electronic annotation 1373309_at BI281129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281129 /DB_XREF=gi:14930553 /DB_XREF=UI-R-DD0-bzr-f-03-0-UI.s1 /CLONE=UI-R-DD0-bzr-f-03-0-UI /FEA=EST /CNT=9 /TID=Rn.35224.1 /TIER=Stack /STK=9 /UG=Rn.35224 /UG_TITLE=ESTs BI281129 transmembrane protein 86A Tmem86a 308602 NM_001135016 0016021 // integral to membrane // inferred from electronic annotation 1373310_at BF396512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396512 /DB_XREF=gi:11381486 /DB_XREF=UI-R-BS2-bdz-a-05-0-UI.s1 /CLONE=UI-R-BS2-bdz-a-05-0-UI /FEA=EST /CNT=9 /TID=Rn.33629.1 /TIER=Stack /STK=9 /UG=Rn.33629 /UG_TITLE=ESTs BF396512 1373311_at BF405581 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405581 /DB_XREF=gi:11393556 /DB_XREF=UI-R-CA1-bix-g-06-0-UI.s1 /CLONE=UI-R-CA1-bix-g-06-0-UI /FEA=EST /CNT=9 /TID=Rn.3080.1 /TIER=Stack /STK=9 /UG=Rn.3080 /UG_TITLE=ESTs BF405581 PHD finger protein 3 Phf3 363210 NM_001108791 0006350 // transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373312_at BI295064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295064 /DB_XREF=gi:14958134 /DB_XREF=UI-R-DK0-cef-d-07-0-UI.s1 /CLONE=UI-R-DK0-cef-d-07-0-UI /FEA=EST /CNT=9 /TID=Rn.29895.1 /TIER=Stack /STK=9 /UG=Rn.29895 /UG_TITLE=ESTs BI295064 paroxysmal nonkinesiogenic dyskinesia Pnkd 100188944 NM_001134750 /// NM_001134751 /// NM_001134753 0004416 // hydroxyacylglutathione hydrolase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1373313_at BM391570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391570 /DB_XREF=gi:18191623 /DB_XREF=UI-R-DY0-ckr-d-19-0-UI.s1 /CLONE=UI-R-DY0-ckr-d-19-0-UI /FEA=EST /CNT=9 /TID=Rn.808.1 /TIER=Stack /STK=9 /UG=Rn.808 /UG_TITLE=ESTs BM391570 Sel-1 suppressor of lin-12-like (C. elegans) Sel1l 314352 NM_177933 0007219 // Notch signaling pathway // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1373314_at BF399075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399075 /DB_XREF=gi:11384079 /DB_XREF=UI-R-CA1-bja-n-03-0-UI.s1 /CLONE=UI-R-CA1-bja-n-03-0-UI /FEA=EST /CNT=9 /TID=Rn.62812.1 /TIER=Stack /STK=9 /UG=Rn.62812 /UG_TITLE=ESTs BF399075 1373315_at AI176425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176425 /DB_XREF=gi:3727063 /DB_XREF=EST220009 /CLONE=ROVBR57 /FEA=EST /CNT=9 /TID=Rn.800.1 /TIER=Stack /STK=9 /UG=Rn.800 /UG_TITLE=ESTs AI176425 aryl hydrocarbon receptor nuclear translocator 2 Arnt2 25243 NM_012781 0001666 // response to hypoxia // inferred from expression pattern /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0042221 // response to chemical stimulus // traceable author statement /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0017162 // aryl hydrocarbon receptor binding // inferred from electronic annotation /// 0017162 // aryl hydrocarbon receptor binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 1373316_at BF409329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409329 /DB_XREF=gi:11397304 /DB_XREF=UI-R-CA1-ble-g-07-0-UI.s1 /CLONE=UI-R-CA1-ble-g-07-0-UI /FEA=EST /CNT=9 /TID=Rn.63571.1 /TIER=Stack /STK=9 /UG=Rn.63571 /UG_TITLE=ESTs BF409329 1373317_at BI278721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278721 /DB_XREF=gi:14925849 /DB_XREF=UI-R-CZ0-bzb-a-10-0-UI.s1 /CLONE=UI-R-CZ0-bzb-a-10-0-UI /FEA=EST /CNT=9 /TID=Rn.20349.1 /TIER=Stack /STK=9 /UG=Rn.20349 /UG_TITLE=ESTs, Weakly similar to CALM_HUMAN CALMODULIN (R.norvegicus) BI278721 calmodulin 4 Calm4 364774 XM_001062982 /// XM_002725300 /// XM_344627 0005625 // soluble fraction // not recorded /// 0005626 // insoluble fraction // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // not recorded 1373318_at BI300650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300650 /DB_XREF=gi:14976930 /DB_XREF=UI-R-CV2-cih-f-11-0-UI.s1 /CLONE=UI-R-CV2-cih-f-11-0-UI /FEA=EST /CNT=9 /TID=Rn.67002.1 /TIER=Stack /STK=9 /UG=Rn.67002 /UG_TITLE=ESTs BI300650 1373319_at BF419628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419628 /DB_XREF=gi:11407617 /DB_XREF=UI-R-CA0-bpe-d-07-0-UI.s1 /CLONE=UI-R-CA0-bpe-d-07-0-UI /FEA=EST /CNT=9 /TID=Rn.3014.1 /TIER=Stack /STK=9 /UG=Rn.3014 /UG_TITLE=ESTs, Highly similar to member of DEAD box protein family (H.sapiens) BF419628 DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 Ddx1 84474 NM_053414 0006302 // double-strand break repair // inferred from sequence or structural similarity /// 0006350 // transcription // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007275 // multicellular organismal development // not recorded /// 0032508 // DNA duplex unwinding // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0010494 // stress granule // inferred from electronic annotation /// 0010494 // stress granule // not recorded /// 0010494 // stress granule // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0003712 // transcription cofactor activity // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from sequence or structural similarity /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from sequence or structural similarity /// 0008143 // poly(A) RNA binding // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0033677 // DNA/RNA helicase activity // inferred from sequence or structural similarity 1373320_at BG373883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373883 /DB_XREF=gi:13298355 /DB_XREF=UI-R-CV1-bsk-h-12-0-UI.s1 /CLONE=UI-R-CV1-bsk-h-12-0-UI /FEA=EST /CNT=9 /TID=Rn.73020.1 /TIER=Stack /STK=9 /UG=Rn.73020 /UG_TITLE=ESTs BG373883 1373321_at BE111682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111682 /DB_XREF=gi:8503787 /DB_XREF=UI-R-BJ1-avv-f-01-0-UI.s1 /CLONE=UI-R-BJ1-avv-f-01-0-UI /FEA=EST /CNT=9 /TID=Rn.96.1 /TIER=Stack /STK=9 /UG=Rn.96 /UG_TITLE=ESTs BE111682 similar to KIAA0954 protein RGD1306622 293736 NM_001170487 /// XM_001074493 /// XM_215195 0014003 // oligodendrocyte development // not recorded /// 0022010 // central nervous system myelination // not recorded /// 0031643 // positive regulation of myelination // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1373322_at BF564703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564703 /DB_XREF=gi:11674433 /DB_XREF=UI-R-BU0-amv-g-06-0-UI.r1 /CLONE=UI-R-BU0-amv-g-06-0-UI /FEA=EST /CNT=9 /TID=Rn.47433.1 /TIER=Stack /STK=9 /UG=Rn.47433 /UG_TITLE=ESTs BF564703 1373323_at BF397730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397730 /DB_XREF=gi:11382714 /DB_XREF=UI-R-BS2-bed-h-11-0-UI.s1 /CLONE=UI-R-BS2-bed-h-11-0-UI /FEA=EST /CNT=9 /TID=Rn.20801.1 /TIER=Stack /STK=9 /UG=Rn.20801 /UG_TITLE=ESTs, Weakly similar to EPIDERMAL GROWTH FACTOR RECEPTOR SUBSTRATE SUBSTRATE 15 (M.musculus) BF397730 epidermal growth factor receptor pathway substrate 15-like 1 Eps15l1 361120 NM_001029921 0005886 // plasma membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373324_at AI236997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236997 /DB_XREF=gi:3830503 /DB_XREF=EST233559 /CLONE=ROVDN40 /FEA=EST /CNT=9 /TID=Rn.25406.1 /TIER=Stack /STK=9 /UG=Rn.25406 /UG_TITLE=ESTs AI236997 dual specificity phosphatase 14 Dusp14 360580 NM_001079893 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation 1373325_at BF413609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413609 /DB_XREF=gi:11401598 /DB_XREF=UI-R-CA0-bog-d-04-0-UI.s1 /CLONE=UI-R-CA0-bog-d-04-0-UI /FEA=EST /CNT=9 /TID=Rn.64397.1 /TIER=Stack /STK=9 /UG=Rn.64397 /UG_TITLE=ESTs, Weakly similar to 2006282A keratin 15 (M.musculus) BF413609 1373326_at AI716512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716512 /DB_XREF=gi:5033765 /DB_XREF=UI-R-Y0-ach-h-12-0-UI.s1 /CLONE=UI-R-Y0-ach-h-12-0-UI /FEA=EST /CNT=9 /TID=Rn.15193.1 /TIER=Stack /STK=9 /UG=Rn.15193 /UG_TITLE=ESTs AI716512 1373327_at BE112887 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112887 /DB_XREF=gi:8504992 /DB_XREF=UI-R-BJ1-awa-a-04-0-UI.s1 /CLONE=UI-R-BJ1-awa-a-04-0-UI /FEA=EST /CNT=9 /TID=Rn.22098.1 /TIER=Stack /STK=9 /UG=Rn.22098 /UG_TITLE=ESTs BE112887 transcription factor EB Tfeb 316214 NM_001025707 0001892 // embryonic placenta development // inferred from electronic annotation /// 0001892 // embryonic placenta development // not recorded /// 0006959 // humoral immune response // inferred from electronic annotation /// 0006959 // humoral immune response // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1373328_at AI009678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009678 /DB_XREF=gi:3223510 /DB_XREF=EST204129 /CLONE=RLUBN17 /FEA=EST /CNT=9 /TID=Rn.39381.1 /TIER=Stack /STK=9 /UG=Rn.39381 /UG_TITLE=ESTs AI009678 1373329_at AI412136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412136 /DB_XREF=gi:4255640 /DB_XREF=EST240430 /CLONE=RKIEH07 /FEA=EST /CNT=9 /TID=Rn.34835.1 /TIER=Stack /STK=9 /UG=Rn.34835 /UG_TITLE=ESTs AI412136 transmembrane protease, serine 2 Tmprss2 156435 NM_130424 0006508 // proteolysis // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1373330_at AI406704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406704 /DB_XREF=gi:4250208 /DB_XREF=EST234991 /CLONE=ROVDV62 /FEA=EST /CNT=9 /TID=Rn.53923.1 /TIER=Stack /STK=9 /UG=Rn.53923 /UG_TITLE=ESTs, Weakly similar to T42386 unconventional myosin 15 - mouse (M.musculus) AI406704 similar to mKIAA1783 protein RGD1560214 690323 XR_085573 /// XR_085975 0005856 // cytoskeleton // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1373331_at BM383310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383310 /DB_XREF=gi:18183363 /DB_XREF=UI-R-DK0-cfm-d-10-0-UI.s2 /CLONE=UI-R-DK0-cfm-d-10-0-UI /FEA=EST /CNT=9 /TID=Rn.38312.1 /TIER=Stack /STK=9 /UG=Rn.38312 /UG_TITLE=ESTs BM383310 leucine rich repeat and sterile alpha motif containing 1 Lrsam1 311866 NM_001107833 0000209 // protein polyubiquitination // not recorded /// 0030163 // protein catabolic process // not recorded /// 0045806 // negative regulation of endocytosis // not recorded /// 0046755 // non-lytic virus budding // not recorded /// 0051865 // protein autoubiquitination // not recorded /// 0070086 // ubiquitin-dependent endocytosis // not recorded 0005737 // cytoplasm // not recorded /// 0044425 // membrane part // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373332_at AA946432 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946432 /DB_XREF=gi:4132786 /DB_XREF=EST201931 /CLONE=ROVAR10 /FEA=EST /CNT=9 /TID=Rn.8046.3 /TIER=Stack /STK=9 /UG=Rn.8046 /LL=64462 /UG_GENE=Csnk1d /UG_TITLE=casein kinase I delta AA946432 casein kinase 1, delta Csnk1d 64462 NM_139060 0000278 // mitotic cell cycle // traceable author statement /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0032922 // circadian regulation of gene expression // not recorded /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0042752 // regulation of circadian rhythm // not recorded /// 0042752 // regulation of circadian rhythm // inferred from sequence or structural similarity /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // traceable author statement /// 0005819 // spindle // traceable author statement /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // inferred from direct assay /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0051219 // phosphoprotein binding // inferred from direct assay 1373333_at AI102732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102732 /DB_XREF=gi:3707430 /DB_XREF=EST212021 /CLONE=REMBR83 /FEA=EST /CNT=9 /TID=Rn.7539.1 /TIER=Stack /STK=9 /UG=Rn.7539 /UG_TITLE=ESTs AI102732 similar to Microsomal signal peptidase 23 kDa subunit (SPase 22 kDa subunit) (SPC22/23) MGC109340 317409 NM_001024267 0006465 // signal peptide processing // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005787 // signal peptidase complex // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1373334_at AI406609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406609 /DB_XREF=gi:4250113 /DB_XREF=EST234896 /CLONE=RBRDP45 /FEA=EST /CNT=9 /TID=Rn.20346.1 /TIER=Stack /STK=9 /UG=Rn.20346 /UG_TITLE=ESTs AI406609 transmembrane protein 129 Tmem129 305458 NM_001126274 1373335_at BE349808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE349808 /DB_XREF=gi:9261661 /DB_XREF=hq43d06.x1 /CLONE=IMAGE:3122123 /FEA=EST /CNT=9 /TID=Rn.15254.1 /TIER=Stack /STK=9 /UG=Rn.15254 /UG_TITLE=ESTs BE349808 zinc finger, DHHC-type containing 9 Zdhhc9 302808 NM_001039016 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373336_at AI411074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411074 /DB_XREF=gi:4254578 /DB_XREF=EST239368 /CLONE=RKIEP10 /FEA=EST /CNT=9 /TID=Rn.9999.3 /TIER=Stack /STK=9 /UG=Rn.9999 /LL=24294 /UG_GENE=Cyp11b2 /UG_TITLE=Cytochrome P450, subfamily XIB, polypeptide 2 (aldosterone synthase) AI411074 G protein-coupled receptor, family C, group 5, member B Gprc5b 293546 NM_001106304 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1373337_at AI412065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412065 /DB_XREF=gi:4255569 /DB_XREF=EST240359 /CLONE=RKIEH82 /FEA=EST /CNT=9 /TID=Rn.7815.1 /TIER=Stack /STK=9 /UG=Rn.7815 /UG_TITLE=ESTs, Weakly similar to 3-phosphoglycerate dehydrogenase (Rattus norvegicus) (R.norvegicus) AI412065 glyoxylate reductase/hydroxypyruvate reductase Grhpr 680021 NM_001113754 0007588 // excretion // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0043648 // dicarboxylic acid metabolic process // inferred from direct assay /// 0046487 // glyoxylate metabolic process // not recorded /// 0055114 // oxidation reduction // not recorded 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008465 // glycerate dehydrogenase activity // inferred from direct assay /// 0008465 // glycerate dehydrogenase activity // not recorded /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0016618 // hydroxypyruvate reductase activity // inferred from direct assay /// 0016618 // hydroxypyruvate reductase activity // not recorded /// 0030267 // glyoxylate reductase (NADP) activity // inferred from direct assay /// 0030267 // glyoxylate reductase (NADP) activity // not recorded /// 0031406 // carboxylic acid binding // inferred from physical interaction /// 0048037 // cofactor binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from direct assay /// 0051287 // NAD or NADH binding // inferred from direct assay /// 0051287 // NAD or NADH binding // inferred from electronic annotation 1373338_at AI175767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175767 /DB_XREF=gi:3726405 /DB_XREF=EST219335 /CLONE=ROVBF09 /FEA=EST /CNT=9 /TID=Rn.17955.1 /TIER=Stack /STK=9 /UG=Rn.17955 /UG_TITLE=ESTs AI175767 1373339_at AI599410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599410 /DB_XREF=gi:4608458 /DB_XREF=EST251113 /CLONE=REMEO84 /FEA=EST /CNT=9 /TID=Rn.20189.1 /TIER=Stack /STK=9 /UG=Rn.20189 /UG_TITLE=ESTs AI599410 LETM1 domain containing 1 Letmd1 681352 NM_001122781 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // not recorded 1373340_at AI179321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179321 /DB_XREF=gi:3729959 /DB_XREF=EST223016 /CLONE=RSPCF17 /FEA=EST /CNT=9 /TID=Rn.9342.1 /TIER=Stack /STK=9 /UG=Rn.9342 /UG_TITLE=ESTs, Moderately similar to DUAL SPECIFICITY PROTEIN PHOSPHATASE 6 (R.norvegicus) AI179321 dual specificity phosphatase 9 Dusp9 293847 NM_001037973 0000188 // inactivation of MAPK activity // inferred from electronic annotation /// 0000188 // inactivation of MAPK activity // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // not recorded 1373341_at AI231183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231183 /DB_XREF=gi:3815063 /DB_XREF=EST227871 /CLONE=REMDG86 /FEA=EST /CNT=9 /TID=Rn.19744.1 /TIER=Stack /STK=9 /UG=Rn.19744 /UG_TITLE=ESTs AI231183 family with sequence similarity 53, member A Fam53a 305461 NM_001107228 1373342_at AI013253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013253 /DB_XREF=gi:3227309 /DB_XREF=EST207928 /CLONE=RSPBI68 /FEA=EST /CNT=9 /TID=Rn.17980.1 /TIER=Stack /STK=9 /UG=Rn.17980 /UG_TITLE=ESTs, Weakly similar to A35364 carcinoembryonic antigen-related protein (R.norvegicus) AI013253 IGF-like family member 3 Igfl3 361516 NM_001108474 1373343_at AI175820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175820 /DB_XREF=gi:3726458 /DB_XREF=EST219391 /CLONE=ROVBF89 /FEA=EST /CNT=9 /TID=Rn.28934.1 /TIER=Stack /STK=9 /UG=Rn.28934 /UG_TITLE=ESTs AI175820 1373344_at AI412541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412541 /DB_XREF=gi:4256045 /DB_XREF=EST240840 /CLONE=RBRDT45 /FEA=EST /CNT=9 /TID=Rn.16693.1 /TIER=Stack /STK=9 /UG=Rn.16693 /UG_TITLE=ESTs, Weakly similar to A55183 GS2 protein (H.sapiens) AI412541 similar to GS2 gene RGD1562200 363471 XM_001058636 /// XM_343790 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation 1373345_at AW523747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523747 /DB_XREF=gi:7166132 /DB_XREF=UI-R-BO0-aih-f-07-0-UI.s1 /CLONE=UI-R-BO0-aih-f-07-0-UI /FEA=EST /CNT=9 /TID=Rn.41377.1 /TIER=Stack /STK=9 /UG=Rn.41377 /UG_TITLE=ESTs AW523747 adhesion molecule with Ig like domain 2 Amigo2 300186 NM_182816 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from physical interaction /// 0007157 // heterophilic cell-cell adhesion // inferred from physical interaction /// 0043069 // negative regulation of programmed cell death // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1373346_at AI009492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009492 /DB_XREF=gi:3223324 /DB_XREF=EST203943 /CLONE=RHEBK76 /FEA=EST /CNT=9 /TID=Rn.22179.1 /TIER=Stack /STK=9 /UG=Rn.22179 /UG_TITLE=ESTs, Highly similar to Unknown (H.sapiens) AI009492 endoplasmic reticulum lectin 1 Erlec1 289874 NM_001106023 0030433 // ER-associated protein catabolic process // not recorded 0005788 // endoplasmic reticulum lumen // not recorded 0001948 // glycoprotein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373347_at BF419134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419134 /DB_XREF=gi:11407164 /DB_XREF=UI-R-BJ2-bqo-e-04-0-UI.s1 /CLONE=UI-R-BJ2-bqo-e-04-0-UI /FEA=EST /CNT=9 /TID=Rn.33594.1 /TIER=Stack /STK=9 /UG=Rn.33594 /UG_TITLE=ESTs, Weakly similar to Y41E3.7.p (Caenorhabditis elegans) (C.elegans) BF419134 acyl-Coenzyme A binding domain containing 3 Acbd3 289312 NM_182843 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000062 // acyl-CoA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373348_at AI500940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI500940 /DB_XREF=gi:4398791 /DB_XREF=UI-R-C2p-rn-h-11-0-UI.s1 /CLONE=UI-R-C2p-rn-h-11-0-UI /FEA=EST /CNT=9 /TID=Rn.35218.1 /TIER=Stack /STK=9 /UG=Rn.35218 /UG_TITLE=ESTs AI500940 1373349_at AI764437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764437 /DB_XREF=gi:5210420 /DB_XREF=UI-R-Y0-abk-e-03-0-UI.s1 /CLONE=UI-R-Y0-abk-e-03-0-UI /FEA=EST /CNT=9 /TID=Rn.41473.1 /TIER=Stack /STK=9 /UG=Rn.41473 /UG_TITLE=ESTs AI764437 1373350_at H31668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31668 /DB_XREF=gi:977085 /DB_XREF=EST105955 /CLONE=RPCAV69 /FEA=EST /CNT=9 /TID=Rn.20587.1 /TIER=Stack /STK=9 /UG=Rn.20587 /UG_TITLE=ESTs H31668 PC4 and SFRS1 interacting protein 1 Psip1 313323 NM_175765 0006350 // transcription // inferred from electronic annotation /// 0019047 // provirus integration // not recorded /// 0019059 // initiation of viral infection // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded 0003677 // DNA binding // inferred from electronic annotation 1373351_at BI286775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286775 /DB_XREF=gi:14941745 /DB_XREF=UI-R-CT0s-car-f-09-0-UI.s1 /CLONE=UI-R-CT0s-car-f-09-0-UI /FEA=EST /CNT=9 /TID=Rn.26749.1 /TIER=Stack /STK=9 /UG=Rn.26749 /UG_TITLE=ESTs BI286775 Ankyrin 2, neuronal Ank2 362036 XM_001076082 /// XM_342337 0007165 // signal transduction // inferred from electronic annotation /// 0007399 // nervous system development // inferred from expression pattern /// 0030913 // paranodal junction assembly // inferred from expression pattern /// 0051597 // response to methylmercury // inferred from expression pattern 0005856 // cytoskeleton // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0019717 // synaptosome // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0005200 // structural constituent of cytoskeleton // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation 1373352_at BM387197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387197 /DB_XREF=gi:18187250 /DB_XREF=UI-R-CN1-cji-p-09-0-UI.s1 /CLONE=UI-R-CN1-cji-p-09-0-UI /FEA=EST /CNT=9 /TID=Rn.40640.1 /TIER=Stack /STK=9 /UG=Rn.40640 /UG_TITLE=ESTs, Weakly similar to S113 MOUSE S100 CALCIUM-BINDING PROTEIN A13 (M.musculus) BM387197 similar to S100 calcium binding protein A14 LOC685385 685385 XM_001063574 /// XM_002725995 0005509 // calcium ion binding // inferred from electronic annotation 1373353_at BE097309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097309 /DB_XREF=gi:8488240 /DB_XREF=UI-R-BO1-apv-g-12-0-UI.s1 /CLONE=UI-R-BO1-apv-g-12-0-UI /FEA=EST /CNT=9 /TID=Rn.46694.1 /TIER=Stack /STK=9 /UG=Rn.46694 /UG_TITLE=ESTs, Moderately similar to BR14_HUMAN PEREGRIN (H.sapiens) BE097309 bromodomain and PHD finger containing, 1 Brpf1 679713 NM_001191572 /// XM_001054156 /// XM_002726395 /// XM_002726396 /// XM_002726397 /// XM_002726398 /// XM_002729422 /// XM_002729423 /// XM_002729424 0043966 // histone H3 acetylation // not recorded /// 0045941 // positive regulation of transcription // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0070776 // MOZ/MORF histone acetyltransferase complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1373354_at BF418347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418347 /DB_XREF=gi:11406336 /DB_XREF=UI-R-CA0-bme-a-07-0-UI.s1 /CLONE=UI-R-CA0-bme-a-07-0-UI /FEA=EST /CNT=9 /TID=Rn.48532.1 /TIER=Stack /STK=9 /UG=Rn.48532 /UG_TITLE=ESTs BF418347 ring finger protein 165 Rnf165 307251 NM_001164505 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373355_at BI299014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299014 /DB_XREF=gi:14975294 /DB_XREF=UI-R-CV2-chq-b-10-0-UI.s1 /CLONE=UI-R-CV2-chq-b-10-0-UI /FEA=EST /CNT=9 /TID=Rn.12638.1 /TIER=Stack /STK=9 /UG=Rn.12638 /UG_TITLE=ESTs BI299014 rCG31761-like LOC100365715 100365715 XM_002726994 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373356_at BG378170 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378170 /DB_XREF=gi:13302642 /DB_XREF=UI-R-CV1-bvo-g-10-0-UI.s1 /CLONE=UI-R-CV1-bvo-g-10-0-UI /FEA=EST /CNT=9 /TID=Rn.66547.1 /TIER=Stack /STK=9 /UG=Rn.66547 /UG_TITLE=ESTs BG378170 1373357_at BI291467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291467 /DB_XREF=gi:14951037 /DB_XREF=UI-R-CV2-cgq-f-05-0-UI.s1 /CLONE=UI-R-CV2-cgq-f-05-0-UI /FEA=EST /CNT=9 /TID=Rn.67022.1 /TIER=Stack /STK=9 /UG=Rn.67022 /UG_TITLE=ESTs BI291467 1373358_at BG374246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374246 /DB_XREF=gi:13298718 /DB_XREF=UI-R-CV1-bsn-a-12-0-UI.s1 /CLONE=UI-R-CV1-bsn-a-12-0-UI /FEA=EST /CNT=9 /TID=Rn.73033.1 /TIER=Stack /STK=9 /UG=Rn.73033 /UG_TITLE=ESTs, Weakly similar to PROBABLE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE (H.sapiens) BG374246 ubiquitin specific peptidase 8 Usp8 296121 NM_001106502 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007032 // endosome organization // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0070536 // protein K63-linked deubiquitination // not recorded /// 0071108 // protein K48-linked deubiquitination // not recorded 0005622 // intracellular // not recorded /// 0005769 // early endosome // not recorded /// 0005829 // cytosol // not recorded /// 0019897 // extrinsic to plasma membrane // not recorded 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1373359_at BI298204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298204 /DB_XREF=gi:14974484 /DB_XREF=UI-R-CV2-chg-e-09-0-UI.s1 /CLONE=UI-R-CV2-chg-e-09-0-UI /FEA=EST /CNT=9 /TID=Rn.73218.1 /TIER=Stack /STK=9 /UG=Rn.73218 /UG_TITLE=ESTs BI298204 1373360_at BF398966 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398966 /DB_XREF=gi:11383969 /DB_XREF=UI-R-CA1-biz-e-06-0-UI.s1 /CLONE=UI-R-CA1-biz-e-06-0-UI /FEA=EST /CNT=9 /TID=Rn.57379.1 /TIER=Stack /STK=9 /UG=Rn.57379 /UG_TITLE=ESTs BF398966 1373361_at BF394144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394144 /DB_XREF=gi:11379008 /DB_XREF=UI-R-CA0-bha-c-02-0-UI.s1 /CLONE=UI-R-CA0-bha-c-02-0-UI /FEA=EST /CNT=9 /TID=Rn.62782.1 /TIER=Stack /STK=9 /UG=Rn.62782 /UG_TITLE=ESTs BF394144 1373362_at BI296109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296109 /DB_XREF=gi:14960221 /DB_XREF=UI-R-DK0-cew-d-12-0-UI.s1 /CLONE=UI-R-DK0-cew-d-12-0-UI /FEA=EST /CNT=49 /TID=Rn.2334.1 /TIER=Stack /STK=8 /UG=Rn.2334 /UG_TITLE=ESTs, Highly similar to UCR2 RAT UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 PRECURSOR (R.norvegicus) BI296109 ubiquinol cytochrome c reductase core protein 2 Uqcrc2 293448 NM_001006970 0006508 // proteolysis // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005750 // mitochondrial respiratory chain complex III // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1373363_at BI281702 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281702 /DB_XREF=gi:14931710 /DB_XREF=UI-R-CT0s-cav-d-12-0-UI.s1 /CLONE=UI-R-CT0s-cav-d-12-0-UI /FEA=EST /CNT=53 /TID=Rn.7481.2 /TIER=Stack /STK=8 /UG=Rn.7481 /LL=94266 /UG_GENE=Rps27 /UG_TITLE=ribosomal protein S27 BI281702 microtubule-associated protein 1B Map1b 29456 NM_019217 0001578 // microtubule bundle formation // inferred from direct assay /// 0001578 // microtubule bundle formation // not recorded /// 0001578 // microtubule bundle formation // inferred from electronic annotation /// 0007026 // negative regulation of microtubule depolymerization // inferred from direct assay /// 0007399 // nervous system development // inferred from expression pattern /// 0007416 // synapse assembly // inferred from expression pattern /// 0007417 // central nervous system development // inferred from expression pattern /// 0009611 // response to wounding // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009743 // response to carbohydrate stimulus // inferred from expression pattern /// 0009790 // embryo development // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0014012 // peripheral nervous system axon regeneration // inferred from expression pattern /// 0016358 // dendrite development // inferred from electronic annotation /// 0016358 // dendrite development // not recorded /// 0017085 // response to insecticide // inferred from expression pattern /// 0021700 // developmental maturation // inferred from expression pattern /// 0031116 // positive regulation of microtubule polymerization // inferred from direct assay /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0033189 // response to vitamin A // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0045773 // positive regulation of axon extension // inferred from mutant phenotype /// 0048666 // neuron development // inferred from expression pattern /// 0048678 // response to axon injury // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0051915 // induction of synaptic plasticity by chemical substance // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003779 // actin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from mutant phenotype /// 0032403 // protein complex binding // inferred from direct assay 1373364_at BI294767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294767 /DB_XREF=gi:14957542 /DB_XREF=UI-R-DK0-ceb-h-06-0-UI.s1 /CLONE=UI-R-DK0-ceb-h-06-0-UI /FEA=EST /CNT=37 /TID=Rn.1636.1 /TIER=Stack /STK=8 /UG=Rn.1636 /UG_TITLE=ESTs, Highly similar to S49172 translation initiation factor eIF-4 gamma (H.sapiens) BI294767 eukaryotic translation initiation factor 4 gamma, 3 Eif4g3 298573 NM_001106693 0016070 // RNA metabolic process // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373365_at AI100861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI100861 /DB_XREF=gi:3705889 /DB_XREF=EST210150 /CLONE=RBRBB67 /FEA=EST /CNT=21 /TID=Rn.7334.1 /TIER=Stack /STK=8 /UG=Rn.7334 /UG_TITLE=ESTs, Weakly similar to KAD4 RAT ADENYLATE KINASE ISOENZYME 4, MITOCHONDRIAL (R.norvegicus) AI100861 cytidine monophosphate (UMP-CMP) kinase 1 Cmpk1 298410 NM_001025655 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006221 // pyrimidine nucleotide biosynthetic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004127 // cytidylate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016776 // phosphotransferase activity, phosphate group as acceptor // inferred from electronic annotation /// 0019201 // nucleotide kinase activity // inferred from electronic annotation /// 0019205 // nucleobase, nucleoside, nucleotide kinase activity // inferred from electronic annotation 1373366_at BM389337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389337 /DB_XREF=gi:18189390 /DB_XREF=UI-R-DZ0-cko-p-04-0-UI.s1 /CLONE=UI-R-DZ0-cko-p-04-0-UI /FEA=EST /CNT=22 /TID=Rn.16694.1 /TIER=Stack /STK=8 /UG=Rn.16694 /UG_TITLE=ESTs BM389337 glucosidase, alpha; neutral AB Ganab 293721 NM_001106334 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0017177 // alpha-glucosidase II complex // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030246 // carbohydrate binding // inferred from electronic annotation 1373367_at AI556297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556297 /DB_XREF=gi:4488660 /DB_XREF=UI-R-C2p-rk-d-04-0-UI.s1 /CLONE=UI-R-C2p-rk-d-04-0-UI /FEA=EST /CNT=18 /TID=Rn.16869.1 /TIER=Stack /STK=8 /UG=Rn.16869 /UG_TITLE=ESTs AI556297 inositol monophosphatase domain containing 1 Impad1 312952 NM_001008772 /// XM_001069864 /// XM_575759 0001501 // skeletal system development // not recorded /// 0001958 // endochondral ossification // not recorded /// 0002063 // chondrocyte development // not recorded /// 0009791 // post-embryonic development // not recorded /// 0016311 // dephosphorylation // not recorded /// 0030204 // chondroitin sulfate metabolic process // not recorded /// 0042733 // embryonic digit morphogenesis // not recorded 0005794 // Golgi apparatus // not recorded 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0008254 // 3'-nucleotidase activity // not recorded 1373368_at BI279680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279680 /DB_XREF=gi:14927723 /DB_XREF=UI-R-DE0-caf-d-09-0-UI.s1 /CLONE=UI-R-DE0-caf-d-09-0-UI /FEA=EST /CNT=18 /TID=Rn.1800.1 /TIER=Stack /STK=8 /UG=Rn.1800 /UG_TITLE=ESTs, Weakly similar to PCO1 MOUSE PROCOLLAGEN C-PROTEINASE ENHANCER PROTEIN PRECURSOR (M.musculus) BI279680 procollagen C-endopeptidase enhancer 2 PCOLCE2 684050 NM_001127640 0005515 // protein binding // inferred from electronic annotation 1373369_at AI406500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406500 /DB_XREF=gi:4250004 /DB_XREF=EST234786 /CLONE=RBRDL62 /FEA=EST /CNT=21 /TID=Rn.1712.1 /TIER=Stack /STK=8 /UG=Rn.1712 /UG_TITLE=ESTs AI406500 zinc finger, MIZ-type containing 1 Zmiz1 361103 NM_001108393 0001570 // vasculogenesis // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0007296 // vitellogenesis // not recorded /// 0007569 // cell aging // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0048589 // developmental growth // not recorded /// 0048844 // artery morphogenesis // not recorded 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1373370_at AI407467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407467 /DB_XREF=gi:4250971 /DB_XREF=EST235756 /CLONE=ROVDT35 /FEA=EST /CNT=20 /TID=Rn.9628.1 /TIER=Stack /STK=8 /UG=Rn.9628 /UG_TITLE=ESTs AI407467 high mobility group 20A Hmg20a 315689 NM_001108150 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373371_a_at AA892572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892572 /DB_XREF=gi:3019451 /DB_XREF=EST196375 /CLONE=RKIAU05 /FEA=EST /CNT=17 /TID=Rn.65180.1 /TIER=Stack /STK=8 /UG=Rn.65180 /UG_TITLE=ESTs AA892572 formation of mitochondrial complexes 1 homolog (S. cerevisiae) Fmc1 500087 NM_001037795 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1373372_at BM389227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389227 /DB_XREF=gi:18189280 /DB_XREF=UI-R-DZ0-cko-i-16-0-UI.s1 /CLONE=UI-R-DZ0-cko-i-16-0-UI /FEA=EST /CNT=28 /TID=Rn.994.1 /TIER=Stack /STK=8 /UG=Rn.994 /UG_TITLE=ESTs BM389227 similar to lymphocyte antigen 6 complex, locus E ligand LOC501282 501282 XM_002727156 /// XM_576697 1373373_at BI295011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295011 /DB_XREF=gi:14958028 /DB_XREF=UI-R-DK0-cee-g-03-0-UI.s1 /CLONE=UI-R-DK0-cee-g-03-0-UI /FEA=EST /CNT=16 /TID=Rn.12948.3 /TIER=Stack /STK=8 /UG=Rn.12948 /LL=116469 /UG_GENE=Ecac1 /UG_TITLE=epithelial calcium channel 1 BI295011 1373374_at BM389691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389691 /DB_XREF=gi:18189744 /DB_XREF=UI-R-CN1-cjp-c-08-0-UI.s1 /CLONE=UI-R-CN1-cjp-c-08-0-UI /FEA=EST /CNT=16 /TID=Rn.2517.1 /TIER=Stack /STK=8 /UG=Rn.2517 /UG_TITLE=ESTs BM389691 LIM domain only 4 Lmo4 362051 NM_001009708 0001843 // neural tube closure // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373375_at BI275835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275835 /DB_XREF=gi:14920152 /DB_XREF=UI-R-CX0-bxh-b-06-0-UI.s1 /CLONE=UI-R-CX0-bxh-b-06-0-UI /FEA=EST /CNT=15 /TID=Rn.2010.1 /TIER=Stack /STK=8 /UG=Rn.2010 /UG_TITLE=ESTs, Highly similar to hypothetical protein (M.musculus) BI275835 DENN/MADD domain containing 5A Dennd5a 308942 NM_001107546 0050790 // regulation of catalytic activity // not recorded 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // not recorded /// 0017137 // Rab GTPase binding // inferred from electronic annotation 1373376_at BI285979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285979 /DB_XREF=gi:14940170 /DB_XREF=UI-R-CX0s-ccu-a-10-0-UI.s1 /CLONE=UI-R-CX0s-ccu-a-10-0-UI /FEA=EST /CNT=15 /TID=Rn.7702.1 /TIER=Stack /STK=8 /UG=Rn.7702 /UG_TITLE=ESTs BI285979 1373377_at BG376162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376162 /DB_XREF=gi:13300634 /DB_XREF=UI-R-CT0-bun-c-03-0-UI.s1 /CLONE=UI-R-CT0-bun-c-03-0-UI /FEA=EST /CNT=15 /TID=Rn.40268.1 /TIER=Stack /STK=8 /UG=Rn.40268 /UG_TITLE=ESTs BG376162 sodium channel modifier 1 Scnm1 310662 NM_001107696 0008380 // RNA splicing // not recorded 0005634 // nucleus // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373378_at BF410522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410522 /DB_XREF=gi:11398497 /DB_XREF=UI-R-CA0-bme-g-01-0-UI.s1 /CLONE=UI-R-CA0-bme-g-01-0-UI /FEA=EST /CNT=17 /TID=Rn.33035.1 /TIER=Stack /STK=8 /UG=Rn.33035 /UG_TITLE=ESTs, Weakly similar to F56H1.5.p (Caenorhabditis elegans) (C.elegans) BF410522 ATP/GTP binding protein 1 Agtpbp1 290986 NM_001106100 0006508 // proteolysis // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0021702 // cerebellar Purkinje cell differentiation // inferred from electronic annotation /// 0021702 // cerebellar Purkinje cell differentiation // not recorded /// 0042133 // neurotransmitter metabolic process // inferred from electronic annotation /// 0042133 // neurotransmitter metabolic process // not recorded /// 0050905 // neuromuscular process // inferred from electronic annotation /// 0050905 // neuromuscular process // not recorded 0000221 // vacuolar proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 1373379_at BF396350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396350 /DB_XREF=gi:11381322 /DB_XREF=UI-R-BS2-bdx-b-04-0-UI.s1 /CLONE=UI-R-BS2-bdx-b-04-0-UI /FEA=EST /CNT=16 /TID=Rn.22238.1 /TIER=Stack /STK=8 /UG=Rn.22238 /UG_TITLE=ESTs BF396350 interleukin-1 receptor-associated kinase 1 Irak1 363520 NM_001127555 0001959 // regulation of cytokine-mediated signaling pathway // not recorded /// 0002237 // response to molecule of bacterial origin // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded /// 0007250 // activation of NF-kappaB-inducing kinase activity // not recorded /// 0007254 // JNK cascade // inferred from mutant phenotype /// 0010874 // regulation of cholesterol efflux // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from mutant phenotype /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0031663 // lipopolysaccharide-mediated signaling pathway // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0032494 // response to peptidoglycan // not recorded /// 0032496 // response to lipopolysaccharide // not recorded /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0034134 // toll-like receptor 2 signaling pathway // not recorded /// 0034142 // toll-like receptor 4 signaling pathway // not recorded /// 0043406 // positive regulation of MAP kinase activity // not recorded /// 0043507 // positive regulation of JUN kinase activity // not recorded /// 0045087 // innate immune response // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051259 // protein oligomerization // not recorded /// 0070498 // interleukin-1-mediated signaling pathway // not recorded /// 0070555 // response to interleukin-1 // not recorded 0005624 // membrane fraction // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005149 // interleukin-1 receptor binding // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1373380_at AI169085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169085 /DB_XREF=gi:3705393 /DB_XREF=EST214915 /CLONE=RKIBM86 /FEA=EST /CNT=16 /TID=Rn.1230.1 /TIER=Stack /STK=8 /UG=Rn.1230 /UG_TITLE=ESTs AI169085 zinc finger CCCH-type containing 15 Zc3h15 362154 NM_001010963 0019221 // cytokine-mediated signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373381_at AI236889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236889 /DB_XREF=gi:3830395 /DB_XREF=EST233451 /CLONE=ROVDL82 /FEA=EST /CNT=15 /TID=Rn.18143.1 /TIER=Stack /STK=8 /UG=Rn.18143 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) AI236889 hect domain and RLD 4 Herc4 309758 NM_001012074 0006464 // protein modification process // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1373382_at AI408771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408771 /DB_XREF=gi:4252275 /DB_XREF=EST237062 /CLONE=ROVEG96 /FEA=EST /CNT=14 /TID=Rn.22344.1 /TIER=Stack /STK=8 /UG=Rn.22344 /UG_TITLE=ESTs, Highly similar to similar to S. cerevisiae RER1 (Homo sapiens) (H.sapiens) AI408771 RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae) Rer1 298675 NM_001039012 0006890 // retrograde vesicle-mediated transport, Golgi to ER // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // not recorded 1373383_at AA848807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848807 /DB_XREF=gi:4131674 /DB_XREF=EST191568 /CLONE=RLUAG66 /FEA=EST /CNT=14 /TID=Rn.3177.1 /TIER=Stack /STK=8 /UG=Rn.3177 /UG_TITLE=ESTs, Moderately similar to AF132946 1 CGI-12 protein (H.sapiens) AA848807 MTERF domain containing 1 Mterfd1 299514 NM_199387 0045892 // negative regulation of transcription, DNA-dependent // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation 0010843 // promoter binding // inferred from sequence or structural similarity 1373384_at BM391893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391893 /DB_XREF=gi:18191946 /DB_XREF=UI-R-DO1-cmk-p-12-0-UI.s1 /CLONE=UI-R-DO1-cmk-p-12-0-UI /FEA=EST /CNT=14 /TID=Rn.2153.1 /TIER=Stack /STK=8 /UG=Rn.2153 /UG_TITLE=ESTs BM391893 1373385_at BF550271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550271 /DB_XREF=gi:11659959 /DB_XREF=UI-R-A1-ec-f-09-0-UI.r1 /CLONE=UI-R-A1-ec-f-09-0-UI /FEA=EST /CNT=14 /TID=Rn.15530.1 /TIER=Stack /STK=8 /UG=Rn.15530 /UG_TITLE=ESTs BF550271 1373386_at AI179953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179953 /DB_XREF=gi:3730591 /DB_XREF=EST223684 /CLONE=RSPCO16 /FEA=EST /CNT=14 /TID=Rn.9230.1 /TIER=Stack /STK=8 /UG=Rn.9230 /UG_TITLE=ESTs, Highly similar to GAP JUNCTION BETA-2 PROTEIN (R.norvegicus) AI179953 gap junction protein, beta 2 Gjb2 394266 NM_001004099 0007154 // cell communication // inferred from electronic annotation /// 0007267 // cell-cell signaling // traceable author statement /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0030539 // male genitalia development // inferred from expression pattern 0000139 // Golgi membrane // not recorded /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005921 // gap junction // inferred from direct assay /// 0005921 // gap junction // not recorded /// 0005921 // gap junction // traceable author statement /// 0005921 // gap junction // inferred from electronic annotation /// 0005922 // connexon complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation 0005243 // gap junction channel activity // traceable author statement /// 0005243 // gap junction channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1373387_at BF558946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558946 /DB_XREF=gi:11668676 /DB_XREF=UI-R-A0-az-h-09-0-UI.r1 /CLONE=UI-R-A0-az-h-09-0-UI /FEA=EST /CNT=14 /TID=Rn.2233.1 /TIER=Stack /STK=8 /UG=Rn.2233 /UG_TITLE=ESTs, Weakly similar to CARG-BINDING FACTOR-A (M.musculus) BF558946 similar to CG33714-PB, isoform B LOC688717 688717 NM_001109507 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1373388_at BI279290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279290 /DB_XREF=gi:14926963 /DB_XREF=UI-R-DA0-bym-e-12-0-UI.s1 /CLONE=UI-R-DA0-bym-e-12-0-UI /FEA=EST /CNT=22 /TID=Rn.5977.1 /TIER=Stack /STK=8 /UG=Rn.5977 /UG_TITLE=ESTs BI279290 signal peptide peptidase 3 Sppl3 360822 XR_085589 /// XR_085997 0016021 // integral to membrane // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation 1373389_at BM391807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391807 /DB_XREF=gi:18191860 /DB_XREF=UI-R-DO1-cmk-o-07-0-UI.s1 /CLONE=UI-R-DO1-cmk-o-07-0-UI /FEA=EST /CNT=19 /TID=Rn.13649.1 /TIER=Stack /STK=8 /UG=Rn.13649 /UG_TITLE=ESTs, Weakly similar to ACDV RAT ACYL-COA DEHYDROGENASE, VERY-LONG-CHAIN SPECIFIC, MITOCHONDRIAL PRECURSOR (R.norvegicus) BM391807 acyl-Coenzyme A dehydrogenase family, member 9 Acad9 294973 NM_181768 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1373390_at AI178783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178783 /DB_XREF=gi:3729421 /DB_XREF=EST222465 /CLONE=RSPBM55 /FEA=EST /CNT=16 /TID=Rn.2939.1 /TIER=Stack /STK=8 /UG=Rn.2939 /UG_TITLE=ESTs AI178783 male-specific lethal 1 homolog (Drosophila) Msl1 303514 NM_001107048 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 1373391_at BM390343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390343 /DB_XREF=gi:18190396 /DB_XREF=UI-R-CN1-cjq-m-22-0-UI.s1 /CLONE=UI-R-CN1-cjq-m-22-0-UI /FEA=EST /CNT=16 /TID=Rn.16738.1 /TIER=Stack /STK=8 /UG=Rn.16738 /UG_TITLE=ESTs, Moderately similar to F22B5.10.p (Caenorhabditis elegans) (C.elegans) BM390343 transmembrane and coiled-coil domains 1 Tmco1 289196 NM_001009631 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1373392_at AW523924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523924 /DB_XREF=gi:7166309 /DB_XREF=UI-R-BO0-aie-e-12-0-UI.s1 /CLONE=UI-R-BO0-aie-e-12-0-UI /FEA=EST /CNT=15 /TID=Rn.2779.1 /TIER=Stack /STK=8 /UG=Rn.2779 /UG_TITLE=ESTs, Highly similar to PF27 MOUSE TRANSMEMBRANE PROTEIN PFT27 (M.musculus) AW523924 transmembrane protein 165 Tmem165 364137 NM_001024802 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1373393_at BM384468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384468 /DB_XREF=gi:18184516 /DB_XREF=UI-R-CN1-cjs-a-07-0-UI.s2 /CLONE=UI-R-CN1-cjs-a-07-0-UI /FEA=EST /CNT=15 /TID=Rn.35083.1 /TIER=Stack /STK=8 /UG=Rn.35083 /UG_TITLE=ESTs, Highly similar to EXT1 MOUSE EXOSTOSIN-1 (M.musculus) BM384468 exostoses (multiple) 1 Ext1 299907 NM_001130540 /// XM_001065900 /// XM_216920 0001503 // ossification // inferred from electronic annotation /// 0001503 // ossification // not recorded /// 0006024 // glycosaminoglycan biosynthetic process // inferred from electronic annotation /// 0006024 // glycosaminoglycan biosynthetic process // not recorded /// 0007369 // gastrulation // inferred from electronic annotation /// 0007369 // gastrulation // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007492 // endoderm development // inferred from electronic annotation /// 0007492 // endoderm development // not recorded /// 0007498 // mesoderm development // inferred from electronic annotation /// 0007498 // mesoderm development // not recorded /// 0015012 // heparan sulfate proteoglycan biosynthetic process // not recorded /// 0015012 // heparan sulfate proteoglycan biosynthetic process // inferred from electronic annotation /// 0015014 // heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process // inferred from electronic annotation /// 0015014 // heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process // not recorded /// 0021772 // olfactory bulb development // inferred from electronic annotation /// 0021772 // olfactory bulb development // not recorded /// 0033692 // cellular polysaccharide biosynthetic process // not recorded /// 0033692 // cellular polysaccharide biosynthetic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded /// 0031227 // intrinsic to endoplasmic reticulum membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008375 // acetylglucosaminyltransferase activity // not recorded /// 0008375 // acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0015020 // glucuronosyltransferase activity // not recorded /// 0015020 // glucuronosyltransferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // not recorded /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0050508 // glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0050508 // glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity // not recorded /// 0050509 // N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity // inferred from electronic annotation /// 0050509 // N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity // not recorded 1373394_at BM391986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391986 /DB_XREF=gi:18192039 /DB_XREF=UI-R-DO1-cmk-c-24-0-UI.s1 /CLONE=UI-R-DO1-cmk-c-24-0-UI /FEA=EST /CNT=15 /TID=Rn.34195.1 /TIER=Stack /STK=8 /UG=Rn.34195 /UG_TITLE=ESTs BM391986 sphingomyelin phosphodiesterase 4 Smpd4 303790 NM_001167806 0006685 // sphingomyelin catabolic process // inferred from electronic annotation /// 0006685 // sphingomyelin catabolic process // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0050290 // sphingomyelin phosphodiesterase D activity // inferred from electronic annotation /// 0050290 // sphingomyelin phosphodiesterase D activity // not recorded 1373395_at AI044721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044721 /DB_XREF=gi:3291582 /DB_XREF=UI-R-C1-ki-b-08-0-UI.s1 /CLONE=UI-R-C1-ki-b-08-0-UI /FEA=EST /CNT=15 /TID=Rn.13422.1 /TIER=Stack /STK=8 /UG=Rn.13422 /UG_TITLE=ESTs AI044721 tripartite motif-containing 41 Trim41 303088 NM_001134737 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1373396_at BF283617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283617 /DB_XREF=gi:11214687 /DB_XREF=EST448208 /CLONE=RGIEE63 /FEA=EST /CNT=15 /TID=Rn.4144.1 /TIER=Stack /STK=8 /UG=Rn.4144 /UG_TITLE=ESTs BF283617 regulation of nuclear pre-mRNA domain containing 1B Rprd1b 311591 NM_001098727 1373397_at AI180161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180161 /DB_XREF=gi:3730799 /DB_XREF=EST223900 /CLONE=RSPCR31 /FEA=EST /CNT=14 /TID=Rn.7652.1 /TIER=Stack /STK=8 /UG=Rn.7652 /UG_TITLE=ESTs, Highly similar to I52726 microtubule-associated protein EB1 (H.sapiens) AI180161 microtubule-associated protein, RP/EB family, member 1 Mapre1 114764 NM_138509 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0031115 // negative regulation of microtubule polymerization // not recorded /// 0035372 // protein localization to microtubule // not recorded /// 0035372 // protein localization to microtubule // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // not recorded /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005874 // microtubule // not recorded /// 0005881 // cytoplasmic microtubule // not recorded /// 0030981 // cortical microtubule cytoskeleton // not recorded /// 0031253 // cell projection membrane // not recorded /// 0042995 // cell projection // not recorded 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // inferred from electronic annotation /// 0051010 // microtubule plus-end binding // inferred from direct assay /// 0051010 // microtubule plus-end binding // not recorded 1373398_at BI275184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275184 /DB_XREF=gi:14886781 /DB_XREF=UI-R-CX0-bxc-e-08-0-UI.s1 /CLONE=UI-R-CX0-bxc-e-08-0-UI /FEA=EST /CNT=14 /TID=Rn.9335.1 /TIER=Stack /STK=8 /UG=Rn.9335 /UG_TITLE=ESTs BI275184 1373399_at BI291997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291997 /DB_XREF=gi:14952066 /DB_XREF=UI-R-DN0-civ-n-15-0-UI.s1 /CLONE=UI-R-DN0-civ-n-15-0-UI /FEA=EST /CNT=14 /TID=Rn.7395.1 /TIER=Stack /STK=8 /UG=Rn.7395 /UG_TITLE=ESTs, Moderately similar to T43496 hypothetical protein DKFZp434J039.1 (H.sapiens) BI291997 WD repeat domain 6 Wdr6 301007 NM_001006988 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // non-traceable author statement /// 0048009 // insulin-like growth factor receptor signaling pathway // non-traceable author statement 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0043560 // insulin receptor substrate binding // inferred from physical interaction 1373400_at AW918535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918535 /DB_XREF=gi:8084313 /DB_XREF=EST349839 /CLONE=RGIEU47 /FEA=EST /CNT=14 /TID=Rn.15487.1 /TIER=Stack /STK=8 /UG=Rn.15487 /UG_TITLE=ESTs, Highly similar to CAMP-DEPENDENT PROTEIN KINASE TYPE II-ALPHA REGULATORY CHAIN (R.norvegicus) AW918535 Protein kinase, cAMP dependent regulatory, type II alpha Prkar2a 29699 NM_019264 0001932 // regulation of protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0034199 // activation of protein kinase A activity // not recorded /// 0045859 // regulation of protein kinase activity // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from direct assay 0000267 // cell fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005952 // cAMP-dependent protein kinase complex // inferred from direct assay /// 0005952 // cAMP-dependent protein kinase complex // inferred from electronic annotation /// 0030315 // T-tubule // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from direct assay /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from mutant phenotype /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030552 // cAMP binding // inferred from direct assay /// 0030552 // cAMP binding // inferred from electronic annotation /// 0034236 // protein kinase A catalytic subunit binding // inferred by curator /// 0042803 // protein homodimerization activity // inferred from direct assay 1373401_at AI176034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176034 /DB_XREF=gi:3726672 /DB_XREF=EST219610 /CLONE=ROVBJ66 /FEA=EST /CNT=14 /TID=Rn.12723.1 /TIER=Stack /STK=8 /UG=Rn.12723 /UG_TITLE=ESTs AI176034 Tenascin C Tnc 116640 NM_053861 0007162 // negative regulation of cell adhesion // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation 0005578 // proteinaceous extracellular matrix // inferred from direct assay 0005102 // receptor binding // inferred from electronic annotation 1373402_at AA848980 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848980 /DB_XREF=gi:4131689 /DB_XREF=EST191742 /CLONE=RLUAI64 /FEA=EST /CNT=14 /TID=Rn.9427.1 /TIER=Stack /STK=8 /UG=Rn.9427 /UG_TITLE=ESTs AA848980 DnaJ (Hsp40) homolog, subfamily C, member 14 Dnajc14 114481 NM_053690 0006457 // protein folding // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001664 // G-protein-coupled receptor binding // inferred from direct assay /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0050780 // dopamine receptor binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from electronic annotation 1373403_at AI230625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230625 /DB_XREF=gi:3814512 /DB_XREF=EST227320 /CLONE=REMCZ18 /FEA=EST /CNT=14 /TID=Rn.24073.1 /TIER=Stack /STK=8 /UG=Rn.24073 /UG_TITLE=ESTs AI230625 similar to Protein C8orf4 (Thyroid cancer protein 1) (TC-1) LOC684871 684871 NM_001115043 1373404_at AI170354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170354 /DB_XREF=gi:3710394 /DB_XREF=EST216280 /CLONE=RLUCH29 /FEA=EST /CNT=14 /TID=Rn.33826.1 /TIER=Stack /STK=8 /UG=Rn.33826 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) AI170354 mitochondrial ribosomal protein L10 Mrpl10 691075 NM_001109620 0006412 // translation // inferred from sequence or structural similarity /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005762 // mitochondrial large ribosomal subunit // inferred from sequence or structural similarity /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity 1373405_at AI410762 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410762 /DB_XREF=gi:4254266 /DB_XREF=EST239055 /CLONE=RHECU70 /FEA=EST /CNT=13 /TID=Rn.23261.1 /TIER=Stack /STK=8 /UG=Rn.23261 /UG_TITLE=ESTs, Highly similar to T46486 chromosomal protein CAPC homolog DKFZp434F205.1 (H.sapiens) AI410762 1373406_at BM384991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384991 /DB_XREF=gi:18185044 /DB_XREF=UI-R-CN1-cjm-c-06-0-UI.s2 /CLONE=UI-R-CN1-cjm-c-06-0-UI /FEA=EST /CNT=13 /TID=Rn.6487.1 /TIER=Stack /STK=8 /UG=Rn.6487 /UG_TITLE=ESTs BM384991 torsin family 1, member B Tor1b 311854 NM_001039197 0051085 // chaperone mediated protein folding requiring cofactor // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1373407_at BM386604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386604 /DB_XREF=gi:18186657 /DB_XREF=UI-R-CN1-cjg-o-20-0-UI.s1 /CLONE=UI-R-CN1-cjg-o-20-0-UI /FEA=EST /CNT=13 /TID=Rn.22242.1 /TIER=Stack /STK=8 /UG=Rn.22242 /UG_TITLE=ESTs BM386604 1373408_at BI282062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282062 /DB_XREF=gi:14932434 /DB_XREF=UI-R-CU0s-cbw-a-10-0-UI.s1 /CLONE=UI-R-CU0s-cbw-a-10-0-UI /FEA=EST /CNT=13 /TID=Rn.1187.1 /TIER=Stack /STK=8 /UG=Rn.1187 /UG_TITLE=ESTs, Highly similar to TBCA MOUSE TUBULIN-SPECIFIC CHAPERONE A (M.musculus) BI282062 tubulin folding cofactor A Tbca 366995 NM_001013245 0007021 // tubulin complex assembly // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0051082 // unfolded protein binding // inferred from electronic annotation 1373409_at BI294738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294738 /DB_XREF=gi:14957484 /DB_XREF=UI-R-DK0-ceb-e-07-0-UI.s1 /CLONE=UI-R-DK0-ceb-e-07-0-UI /FEA=EST /CNT=24 /TID=Rn.9242.1 /TIER=Stack /STK=8 /UG=Rn.9242 /UG_TITLE=ESTs, Weakly similar to URB1 RAT DNA BINDING PROTEIN URE-B1 (R.norvegicus) BI294738 1373410_at BE104219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104219 /DB_XREF=gi:8496319 /DB_XREF=UI-R-BX0-arm-c-01-0-UI.s1 /CLONE=UI-R-BX0-arm-c-01-0-UI /FEA=EST /CNT=18 /TID=Rn.2477.1 /TIER=Stack /STK=8 /UG=Rn.2477 /UG_TITLE=ESTs BE104219 myocyte enhancer factor 2C Mef2c 499497 XM_001056692 /// XM_574821 0001568 // blood vessel development // not recorded /// 0001649 // osteoblast differentiation // not recorded /// 0001958 // endochondral ossification // not recorded /// 0001974 // blood vessel remodeling // not recorded /// 0002062 // chondrocyte differentiation // not recorded /// 0003151 // outflow tract morphogenesis // not recorded /// 0003211 // cardiac ventricle formation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007507 // heart development // not recorded /// 0007519 // skeletal muscle tissue development // not recorded /// 0007521 // muscle cell fate determination // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0035051 // cardiac cell differentiation // not recorded /// 0045885 // positive regulation of survival gene product expression // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0051145 // smooth muscle cell differentiation // not recorded /// 0090073 // positive regulation of protein homodimerization activity // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0016607 // nuclear speck // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0042826 // histone deacetylase binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1373411_at BE109655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109655 /DB_XREF=gi:8501760 /DB_XREF=UI-R-BJ1-avq-f-06-0-UI.s1 /CLONE=UI-R-BJ1-avq-f-06-0-UI /FEA=EST /CNT=17 /TID=Rn.65534.1 /TIER=Stack /STK=8 /UG=Rn.65534 /UG_TITLE=ESTs, Highly similar to PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG (M.musculus) BE109655 eukaryotic translation initiation factor 1B Eif1b 301068 NM_001106867 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373412_at AI409146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409146 /DB_XREF=gi:4252650 /DB_XREF=EST237438 /CLONE=ROVEO12 /FEA=EST /CNT=17 /TID=Rn.36789.1 /TIER=Stack /STK=8 /UG=Rn.36789 /UG_TITLE=ESTs, Weakly similar to YQT3_CAEEL HYPOTHETICAL 42.0 KD PROTEIN F25B5.3 IN CHROMOSOME III (C.elegans) AI409146 5'-nucleotidase, cytosolic III Nt5c3 312373 NM_001107862 0046085 // adenosine metabolic process // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // not recorded 0000287 // magnesium ion binding // inferred from electronic annotation /// 0008253 // 5'-nucleotidase activity // inferred from direct assay /// 0008253 // 5'-nucleotidase activity // inferred from electronic annotation /// 0008253 // 5'-nucleotidase activity // not recorded 1373413_at AW531093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531093 /DB_XREF=gi:7173507 /DB_XREF=UI-R-C4-alg-f-03-0-UI.s1 /CLONE=UI-R-C4-alg-f-03-0-UI /FEA=EST /CNT=14 /TID=Rn.41433.1 /TIER=Stack /STK=8 /UG=Rn.41433 /UG_TITLE=ESTs AW531093 transmembrane protein 128 Tmem128 360952 NM_001108362 0016021 // integral to membrane // inferred from electronic annotation 1373414_at BG380515 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380515 /DB_XREF=gi:13304987 /DB_XREF=UI-R-CT0-bty-b-12-0-UI.s1 /CLONE=UI-R-CT0-bty-b-12-0-UI /FEA=EST /CNT=14 /TID=Rn.22298.1 /TIER=Stack /STK=8 /UG=Rn.22298 /UG_TITLE=ESTs, Moderately similar to JC7110 brain-specific membrane anchor protein (H.sapiens) BG380515 transmembrane protein 59-like Tmem59l 306349 XM_001067996 /// XM_224729 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1373415_at AI407050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407050 /DB_XREF=gi:4250554 /DB_XREF=EST235338 /CLONE=ROVDR49 /FEA=EST /CNT=14 /TID=Rn.18217.1 /TIER=Stack /STK=8 /UG=Rn.18217 /UG_TITLE=ESTs AI407050 1373416_at AI176320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176320 /DB_XREF=gi:3726958 /DB_XREF=EST219903 /CLONE=ROVBQ06 /FEA=EST /CNT=13 /TID=Rn.24112.1 /TIER=Stack /STK=8 /UG=Rn.24112 /UG_TITLE=ESTs AI176320 Fibronectin type III domain containing 3B Fndc3b 294925 NM_001191704 /// XM_001057133 /// XM_226988 0045600 // positive regulation of fat cell differentiation // not recorded 0005783 // endoplasmic reticulum // not recorded 1373417_at BI285973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285973 /DB_XREF=gi:14940158 /DB_XREF=UI-R-CX0s-ccu-a-03-0-UI.s1 /CLONE=UI-R-CX0s-ccu-a-03-0-UI /FEA=EST /CNT=13 /TID=Rn.22784.1 /TIER=Stack /STK=8 /UG=Rn.22784 /UG_TITLE=ESTs, Weakly similar to PLS1_RAT Phospholipid scramblase 1 (PL scramblase 1) (Ca2+ dependent phospholipid scramblase 1) (R.norvegicus) BI285973 phospholipid scramblase 3 Plscr3 360549 NM_001012139 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042593 // glucose homeostasis // not recorded /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded 1373418_at BM388143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388143 /DB_XREF=gi:18188196 /DB_XREF=UI-R-DM1-cjz-p-23-0-UI.s1 /CLONE=UI-R-DM1-cjz-p-23-0-UI /FEA=EST /CNT=13 /TID=Rn.18230.1 /TIER=Stack /STK=8 /UG=Rn.18230 /UG_TITLE=ESTs, Moderately similar to SYEP_HUMAN MULTIFUNCTIONAL AMINOACYL-TRNA SYNTHETASE (H.sapiens) BM388143 glutamyl-prolyl-tRNA synthetase Eprs 289352 NM_001024238 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006424 // glutamyl-tRNA aminoacylation // inferred from electronic annotation /// 0006433 // prolyl-tRNA aminoacylation // inferred from electronic annotation /// 0043039 // tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004818 // glutamate-tRNA ligase activity // inferred from electronic annotation /// 0004818 // glutamate-tRNA ligase activity // not recorded /// 0004827 // proline-tRNA ligase activity // inferred from electronic annotation /// 0004827 // proline-tRNA ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016876 // ligase activity, forming aminoacyl-tRNA and related compounds // inferred from electronic annotation 1373419_at AI556884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556884 /DB_XREF=gi:4489247 /DB_XREF=UI-R-C2p-rp-b-03-0-UI.s1 /CLONE=UI-R-C2p-rp-b-03-0-UI /FEA=EST /CNT=13 /TID=Rn.18956.1 /TIER=Stack /STK=8 /UG=Rn.18956 /UG_TITLE=ESTs AI556884 Protein tyrosine phosphatase, receptor type, G Ptprg 171357 NM_134356 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0010977 // negative regulation of neuron projection development // inferred from direct assay /// 0016311 // dephosphorylation // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // non-traceable author statement /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation 1373420_at AI175479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175479 /DB_XREF=gi:3726117 /DB_XREF=EST219030 /CLONE=RMUCN96 /FEA=EST /CNT=13 /TID=Rn.8455.1 /TIER=Stack /STK=8 /UG=Rn.8455 /UG_TITLE=ESTs AI175479 ECSIT homolog (Drosophila) Ecsit 300447 NM_001006986 0001707 // mesoderm formation // inferred from electronic annotation /// 0001707 // mesoderm formation // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0007165 // signal transduction // not recorded /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // not recorded /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // inferred from electronic annotation /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030509 // BMP signaling pathway // not recorded /// 0045087 // innate immune response // inferred from electronic annotation /// 0051341 // regulation of oxidoreductase activity // not recorded /// 0051341 // regulation of oxidoreductase activity // inferred from sequence or structural similarity /// 0051341 // regulation of oxidoreductase activity // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016651 // oxidoreductase activity, acting on NADH or NADPH // not recorded /// 0016651 // oxidoreductase activity, acting on NADH or NADPH // inferred from sequence or structural similarity /// 0016651 // oxidoreductase activity, acting on NADH or NADPH // inferred from electronic annotation 1373421_at BM392224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392224 /DB_XREF=gi:18192277 /DB_XREF=UI-R-DO1-ckp-d-15-0-UI.s1 /CLONE=UI-R-DO1-ckp-d-15-0-UI /FEA=EST /CNT=13 /TID=Rn.4160.1 /TIER=Stack /STK=8 /UG=Rn.4160 /UG_TITLE=ESTs, Highly similar to TGIF MOUSE 5-TG-3 INTERACTING FACTOR (M.musculus) BM392224 TGFB-induced factor homeobox 1 Tgif1 316742 NM_001015020 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001843 // neural tube closure // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0010629 // negative regulation of gene expression // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0048387 // negative regulation of retinoic acid receptor signaling pathway // inferred from electronic annotation /// 0048387 // negative regulation of retinoic acid receptor signaling pathway // not recorded /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016566 // specific transcriptional repressor activity // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0070410 // co-SMAD binding // inferred from physical interaction 1373422_at BE108280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108280 /DB_XREF=gi:8500385 /DB_XREF=UI-R-BS1-ayx-d-11-0-UI.s1 /CLONE=UI-R-BS1-ayx-d-11-0-UI /FEA=EST /CNT=13 /TID=Rn.763.1 /TIER=Stack /STK=8 /UG=Rn.763 /UG_TITLE=ESTs BE108280 La ribonucleoprotein domain family, member 1 Larp1 303158 XM_001075150 /// XM_220446 0005515 // protein binding // not recorded 1373423_at AI170766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170766 /DB_XREF=gi:4134542 /DB_XREF=EST216705 /CLONE=RMUBB24 /FEA=EST /CNT=13 /TID=Rn.22350.1 /TIER=Stack /STK=8 /UG=Rn.22350 /UG_TITLE=ESTs AI170766 Vacuolar protein sorting 36 homolog (S. cerevisiae) Vps36 290851 NM_001106092 0006350 // transcription // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0016020 // membrane // inferred from electronic annotation 0008289 // lipid binding // inferred from electronic annotation /// 0043130 // ubiquitin binding // inferred from electronic annotation /// 0043130 // ubiquitin binding // not recorded 1373424_at BF284776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284776 /DB_XREF=gi:11215846 /DB_XREF=EST449367 /CLONE=RGIEW20 /FEA=EST /CNT=13 /TID=Rn.22467.1 /TIER=Stack /STK=8 /UG=Rn.22467 /UG_TITLE=ESTs, Moderately similar to DGC6 MOUSE DGCR6 PROTEIN (M.musculus) BF284776 DiGeorge syndrome critical region gene 6 Dgcr6 303794 NM_001107080 1373425_at BF284224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284224 /DB_XREF=gi:11215294 /DB_XREF=EST448815 /CLONE=RGIEN02 /FEA=EST /CNT=12 /TID=Rn.17201.1 /TIER=Stack /STK=8 /UG=Rn.17201 /UG_TITLE=ESTs, Weakly similar to CLK3 RAT PROTEIN KINASE CLK3 (R.norvegicus) BF284224 CDC-like kinase 2 /// secretory carrier membrane protein 3 Clk2 /// Scamp3 365842 /// 65169 NM_001014254 /// NM_031724 0006468 // protein phosphorylation // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0032526 // response to retinoic acid // not recorded /// 0042221 // response to chemical stimulus // not recorded /// 0046777 // protein autophosphorylation // not recorded 0000139 // Golgi membrane // not recorded /// 0005634 // nucleus // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1373426_at BI282894 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282894 /DB_XREF=gi:14934112 /DB_XREF=UI-R-CW0s-ccc-f-04-0-UI.s1 /CLONE=UI-R-CW0s-ccc-f-04-0-UI /FEA=EST /CNT=12 /TID=Rn.13651.1 /TIER=Stack /STK=8 /UG=Rn.13651 /UG_TITLE=ESTs, Highly similar to Coordinates Of Rat Map Kinase Erk2 With An Arginine Mutation At Position 52 (R.norvegicus) BI282894 mitogen activated protein kinase 1 Mapk1 116590 NM_053842 0000165 // MAPKKK cascade // inferred from mutant phenotype /// 0000165 // MAPKKK cascade // not recorded /// 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000189 // nuclear translocation of MAPK // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // traceable author statement /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // inferred from direct assay /// 0007165 // signal transduction // not recorded /// 0007243 // intracellular protein kinase cascade // traceable author statement /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from expression pattern /// 0009636 // response to toxin // inferred from direct assay /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0016310 // phosphorylation // not recorded /// 0019233 // sensory perception of pain // inferred from mutant phenotype /// 0019858 // cytosine metabolic process // inferred from electronic annotation /// 0019858 // cytosine metabolic process // not recorded /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0030335 // positive regulation of cell migration // inferred from expression pattern /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0031663 // lipopolysaccharide-mediated signaling pathway // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0042221 // response to chemical stimulus // inferred from direct assay /// 0043330 // response to exogenous dsRNA // inferred from electronic annotation /// 0043330 // response to exogenous dsRNA // not recorded /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045727 // positive regulation of translation // inferred from mutant phenotype /// 0045941 // positive regulation of transcription // inferred from expression pattern /// 0050852 // T cell receptor signaling pathway // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // not recorded /// 0050853 // B cell receptor signaling pathway // inferred from electronic annotation /// 0050853 // B cell receptor signaling pathway // not recorded /// 0060716 // labyrinthine layer blood vessel development // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded /// 0032839 // dendrite cytoplasm // inferred from direct assay /// 0033267 // axon part // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001784 // phosphotyrosine binding // inferred from electronic annotation /// 0001784 // phosphotyrosine binding // not recorded /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred by curator /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004707 // MAP kinase activity // inferred from direct assay /// 0004707 // MAP kinase activity // inferred from electronic annotation /// 0004707 // MAP kinase activity // not recorded /// 0004707 // MAP kinase activity // traceable author statement /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from electronic annotation /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // not recorded /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from physical interaction 1373427_at BI288816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288816 /DB_XREF=gi:14945753 /DB_XREF=UI-R-DK0-cdf-b-10-0-UI.s1 /CLONE=UI-R-DK0-cdf-b-10-0-UI /FEA=EST /CNT=12 /TID=Rn.23439.1 /TIER=Stack /STK=8 /UG=Rn.23439 /UG_TITLE=ESTs, Highly similar to T46254 hypothetical protein DKFZp761H171.1 (H.sapiens) BI288816 Ras-related GTP binding D Rragd 297960 NM_001106641 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1373428_at AA851241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851241 /DB_XREF=gi:4131919 /DB_XREF=EST194009 /CLONE=RPLAE27 /FEA=EST /CNT=12 /TID=Rn.2839.1 /TIER=Stack /STK=8 /UG=Rn.2839 /UG_TITLE=ESTs, Moderately similar to T08697 hypothetical protein DKFZp564A063.1 (H.sapiens) AA851241 breast cancer metastasis-suppressor 1 Brms1 293668 NM_001009605 0009987 // cellular process // inferred from electronic annotation /// 0009987 // cellular process // not recorded 0005515 // protein binding // not recorded 1373429_at BI295832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295832 /DB_XREF=gi:14959674 /DB_XREF=UI-R-DK0-cfb-b-09-0-UI.s1 /CLONE=UI-R-DK0-cfb-b-09-0-UI /FEA=EST /CNT=12 /TID=Rn.18179.1 /TIER=Stack /STK=8 /UG=Rn.18179 /UG_TITLE=ESTs, Weakly similar to T09069 probable cAMP-responsive element-binding transcription factor CREB-RP - mouse (M.musculus) BI295832 activating transcription factor 6 beta Atf6b 406169 NM_001002809 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1373430_at BG378867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378867 /DB_XREF=gi:13303339 /DB_XREF=UI-R-CV1-bvt-g-08-0-UI.s1 /CLONE=UI-R-CV1-bvt-g-08-0-UI /FEA=EST /CNT=12 /TID=Rn.31763.1 /TIER=Stack /STK=8 /UG=Rn.31763 /UG_TITLE=ESTs BG378867 1373431_at AI101427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101427 /DB_XREF=gi:3704643 /DB_XREF=EST210716 /CLONE=RBRBO55 /FEA=EST /CNT=12 /TID=Rn.7626.1 /TIER=Stack /STK=8 /UG=Rn.7626 /UG_TITLE=ESTs AI101427 leucine rich repeat containing 8 family, member D Lrrc8d 305131 NM_001008338 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373432_at BE111604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111604 /DB_XREF=gi:8503709 /DB_XREF=UI-R-BJ1-avc-g-01-0-UI.s1 /CLONE=UI-R-BJ1-avc-g-01-0-UI /FEA=EST /CNT=12 /TID=Rn.9560.2 /TIER=Stack /STK=8 /UG=Rn.9560 /LL=25603 /UG_GENE=Macs /UG_TITLE=Myristoylated alanine-rich protein kinase C substrate BE111604 myristoylated alanine rich protein kinase C substrate Marcks 25603 XM_002728965 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0042585 // germinal vesicle // inferred from electronic annotation /// 0042585 // germinal vesicle // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005080 // protein kinase C binding // inferred from electronic annotation /// 0005080 // protein kinase C binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation 1373433_at BE108745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108745 /DB_XREF=gi:8500850 /DB_XREF=UI-R-BS1-ayy-a-03-0-UI.s1 /CLONE=UI-R-BS1-ayy-a-03-0-UI /FEA=EST /CNT=12 /TID=Rn.6393.1 /TIER=Stack /STK=8 /UG=Rn.6393 /UG_TITLE=ESTs BE108745 nucleosomal binding protein 1 Nsbp1 681284 NM_001134706 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded 1373434_at AA944179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944179 /DB_XREF=gi:3104095 /DB_XREF=EST199678 /CLONE=REMAD33 /FEA=EST /CNT=12 /TID=Rn.7318.1 /TIER=Stack /STK=8 /UG=Rn.7318 /UG_TITLE=ESTs AA944179 1373435_at BG373419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373419 /DB_XREF=gi:13269996 /DB_XREF=UI-R-CS0-bsd-a-06-0-UI.s1 /CLONE=UI-R-CS0-bsd-a-06-0-UI /FEA=EST /CNT=12 /TID=Rn.22371.1 /TIER=Stack /STK=8 /UG=Rn.22371 /UG_TITLE=ESTs BG373419 fragile X mental retardation, autosomal homolog 2 Fxr2 287433 NM_001100647 0005737 // cytoplasm // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373436_at AI171288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171288 /DB_XREF=gi:3711328 /DB_XREF=EST217243 /CLONE=RMUBI58 /FEA=EST /CNT=12 /TID=Rn.22463.1 /TIER=Stack /STK=8 /UG=Rn.22463 /UG_TITLE=ESTs AI171288 similar to RIKEN cDNA 1700040L02 RGD1306739 361834 NM_001134576 1373437_at BI286565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286565 /DB_XREF=gi:14941333 /DB_XREF=UI-R-CT0s-cao-g-12-0-UI.s1 /CLONE=UI-R-CT0s-cao-g-12-0-UI /FEA=EST /CNT=12 /TID=Rn.16580.1 /TIER=Stack /STK=8 /UG=Rn.16580 /UG_TITLE=ESTs BI286565 protein phosphatase 1, regulatory (inhibitor) subunit 8 Ppp1r8 313030 NM_001107911 0008283 // cell proliferation // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0016607 // nuclear speck // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008599 // protein phosphatase type 1 regulator activity // inferred from electronic annotation /// 0008599 // protein phosphatase type 1 regulator activity // not recorded 1373438_at BE329352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329352 /DB_XREF=gi:9203128 /DB_XREF=hq39h01.x1 /CLONE=IMAGE:3121777 /FEA=EST /CNT=12 /TID=Rn.27770.1 /TIER=Stack /STK=8 /UG=Rn.27770 /UG_TITLE=ESTs BE329352 ubiquitin-conjugating enzyme E2O Ube2o 303689 XM_001081723 /// XM_221132 0043687 // post-translational protein modification // inferred from electronic annotation 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1373439_at AI178491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178491 /DB_XREF=gi:3729129 /DB_XREF=EST222165 /CLONE=RPLCR71 /FEA=EST /CNT=12 /TID=Rn.6499.1 /TIER=Stack /STK=8 /UG=Rn.6499 /UG_TITLE=ESTs AI178491 1373440_at AI175525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175525 /DB_XREF=gi:3726163 /DB_XREF=EST219079 /CLONE=RMUCO57 /FEA=EST /CNT=12 /TID=Rn.22183.1 /TIER=Stack /STK=8 /UG=Rn.22183 /UG_TITLE=ESTs AI175525 LYR motif containing 2 Lyrm2 690354 NM_001126096 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1373441_at BI296970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296970 /DB_XREF=gi:14961918 /DB_XREF=UI-R-DK0-cgj-f-12-0-UI.s1 /CLONE=UI-R-DK0-cgj-f-12-0-UI /FEA=EST /CNT=12 /TID=Rn.25812.1 /TIER=Stack /STK=8 /UG=Rn.25812 /UG_TITLE=ESTs BI296970 dynactin 5 Dctn5 308961 NM_001037778 0016740 // transferase activity // inferred from electronic annotation 1373442_at AI169058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169058 /DB_XREF=gi:3705366 /DB_XREF=EST214887 /CLONE=RKIBM50 /FEA=EST /CNT=12 /TID=Rn.1579.1 /TIER=Stack /STK=8 /UG=Rn.1579 /UG_TITLE=ESTs, Weakly similar to JC5889 OS-9 protein precursor (H.sapiens) AI169058 osteosarcoma amplified 9 Os9 362891 NM_001007265 0006457 // protein folding // inferred from electronic annotation /// 0006621 // protein retention in ER lumen // not recorded /// 0006621 // protein retention in ER lumen // inferred from sequence or structural similarity /// 0006621 // protein retention in ER lumen // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030433 // ER-associated protein catabolic process // not recorded /// 0030433 // ER-associated protein catabolic process // inferred from sequence or structural similarity /// 0030433 // ER-associated protein catabolic process // inferred from electronic annotation /// 0034976 // response to endoplasmic reticulum stress // inferred from electronic annotation /// 0034976 // response to endoplasmic reticulum stress // not recorded /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // not recorded /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 0001948 // glycoprotein binding // not recorded /// 0001948 // glycoprotein binding // inferred from sequence or structural similarity /// 0001948 // glycoprotein binding // inferred from electronic annotation /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1373443_a_at AI228292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228292 /DB_XREF=gi:4135336 /DB_XREF=EST224987 /CLONE=RBRCS85 /FEA=EST /CNT=15 /TID=Rn.11082.2 /TIER=Stack /STK=8 /UG=Rn.11082 /LL=25085 /UG_GENE=Th /UG_TITLE=Tyrosine hydroxylase AI228292 ankyrin repeat, family A (RFXANK-like), 2 Ankra2 294679 NM_207595 0001666 // response to hypoxia // inferred from direct assay /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001963 // synaptic transmission, dopaminergic // inferred from electronic annotation /// 0006585 // dopamine biosynthetic process from tyrosine // inferred from direct assay /// 0006585 // dopamine biosynthetic process from tyrosine // inferred from electronic annotation /// 0006585 // dopamine biosynthetic process from tyrosine // inferred from mutant phenotype /// 0006950 // response to stress // inferred from expression pattern /// 0007507 // heart development // inferred from electronic annotation /// 0007601 // visual perception // inferred from electronic annotation /// 0007612 // learning // inferred from electronic annotation /// 0007613 // memory // inferred from electronic annotation /// 0007617 // mating behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0009072 // aromatic amino acid family metabolic process // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0042136 // neurotransmitter biosynthetic process // inferred from electronic annotation /// 0042416 // dopamine biosynthetic process // inferred from electronic annotation /// 0042418 // epinephrine biosynthetic process // inferred from electronic annotation /// 0042421 // norepinephrine biosynthetic process // inferred from electronic annotation /// 0042423 // catecholamine biosynthetic process // inferred from direct assay /// 0042423 // catecholamine biosynthetic process // inferred from electronic annotation /// 0042423 // catecholamine biosynthetic process // traceable author statement /// 0042462 // eye photoreceptor cell development // inferred from electronic annotation /// 0042755 // eating behavior // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from electronic annotation /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0048596 // embryonic camera-type eye morphogenesis // inferred from electronic annotation /// 0051289 // protein homotetramerization // traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005790 // smooth endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from direct assay /// 0009898 // internal side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0019717 // synaptosome // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0033162 // melanosome membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043195 // terminal button // inferred from direct assay /// 0043204 // perikaryon // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from direct assay /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004511 // tyrosine 3-monooxygenase activity // inferred from direct assay /// 0004511 // tyrosine 3-monooxygenase activity // inferred from electronic annotation /// 0004511 // tyrosine 3-monooxygenase activity // traceable author statement /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008198 // ferrous iron binding // inferred from direct assay /// 0008199 // ferric iron binding // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from direct assay /// 0016597 // amino acid binding // inferred from physical interaction /// 0016714 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0019825 // oxygen binding // inferred from direct assay /// 0030169 // low-density lipoprotein binding // not recorded /// 0034617 // tetrahydrobiopterin binding // inferred from direct assay /// 0035240 // dopamine binding // inferred from physical interaction /// 0042826 // histone deacetylase binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1373444_at BF285926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285926 /DB_XREF=gi:11216996 /DB_XREF=EST450517 /CLONE=RGIFL14 /FEA=EST /CNT=14 /TID=Rn.54879.1 /TIER=Stack /STK=8 /UG=Rn.54879 /UG_TITLE=ESTs BF285926 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 Ppfia1 293645 NM_001106320 0005515 // protein binding // not recorded 1373445_at BI296198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296198 /DB_XREF=gi:14960399 /DB_XREF=UI-R-DK0-cex-e-04-0-UI.s1 /CLONE=UI-R-DK0-cex-e-04-0-UI /FEA=EST /CNT=13 /TID=Rn.20702.1 /TIER=Stack /STK=8 /UG=Rn.20702 /UG_TITLE=ESTs BI296198 nucleolar protein 8 Nol8 361221 NM_001108408 0006260 // DNA replication // not recorded /// 0030307 // positive regulation of cell growth // not recorded 0005730 // nucleolus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373446_at AI102512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102512 /DB_XREF=gi:3707275 /DB_XREF=EST211801 /CLONE=REMBO59 /FEA=EST /CNT=13 /TID=Rn.13782.1 /TIER=Stack /STK=8 /UG=Rn.13782 /UG_TITLE=ESTs AI102512 PHD finger protein 13 Phf13 313742 NM_001107995 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373447_at BF281350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281350 /DB_XREF=gi:11212420 /DB_XREF=EST445941 /CLONE=RGIAD57 /FEA=EST /CNT=13 /TID=Rn.19357.1 /TIER=Stack /STK=8 /UG=Rn.19357 /UG_TITLE=ESTs BF281350 hematological and neurological expressed 1-like Hn1l 360492 NM_001013182 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 1373448_at AI413052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI413052 /DB_XREF=gi:4256556 /DB_XREF=EST241353 /CLONE=RBREC08 /FEA=EST /CNT=13 /TID=Rn.3465.1 /TIER=Stack /STK=8 /UG=Rn.3465 /UG_TITLE=ESTs, Weakly similar to ACYLPHOSPHATASE, MUSCLE TYPE ISOZYME (R.norvegicus) AI413052 acylphosphatase 1, erythrocyte (common) type Acyp1 299203 NM_001106746 0003998 // acylphosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1373449_at BG375861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375861 /DB_XREF=gi:13300359 /DB_XREF=UI-R-CT0-buf-g-09-0-UI.s1 /CLONE=UI-R-CT0-buf-g-09-0-UI /FEA=EST /CNT=12 /TID=Rn.23853.1 /TIER=Stack /STK=8 /UG=Rn.23853 /UG_TITLE=ESTs BG375861 TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor Taf5l 307927 NM_001107442 0043966 // histone H3 acetylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0030914 // STAGA complex // not recorded /// 0033276 // transcription factor TFTC complex // not recorded 0003713 // transcription coactivator activity // not recorded /// 0004402 // histone acetyltransferase activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1373450_at AI409857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409857 /DB_XREF=gi:4253361 /DB_XREF=EST238150 /CLONE=RPLDM57 /FEA=EST /CNT=12 /TID=Rn.17881.1 /TIER=Stack /STK=8 /UG=Rn.17881 /UG_TITLE=ESTs AI409857 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1373451_at BG380780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380780 /DB_XREF=gi:13305252 /DB_XREF=UI-R-CT0-bub-d-01-0-UI.s1 /CLONE=UI-R-CT0-bub-d-01-0-UI /FEA=EST /CNT=12 /TID=Rn.16136.1 /TIER=Stack /STK=8 /UG=Rn.16136 /UG_TITLE=ESTs BG380780 ribonuclease H2, subunit B Rnaseh2b 361056 NM_001007007 0005634 // nucleus // inferred from electronic annotation 1373452_at AI232273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232273 /DB_XREF=gi:3816153 /DB_XREF=EST228961 /CLONE=RKIBZ57 /FEA=EST /CNT=12 /TID=Rn.22496.1 /TIER=Stack /STK=8 /UG=Rn.22496 /UG_TITLE=ESTs, Highly similar to RTC2_HUMAN PROBABLE RNA 3-TERMINAL PHOSPHATE CYCLASE 2 (H.sapiens) AI232273 RNA terminal phosphate cyclase-like 1 Rcl1 309301 NM_001013152 0006396 // RNA processing // inferred from electronic annotation 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003824 // catalytic activity // inferred from electronic annotation 1373453_at AA849756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849756 /DB_XREF=gi:2937296 /DB_XREF=EST192523 /CLONE=RMUAI50 /FEA=EST /CNT=12 /TID=Rn.6507.1 /TIER=Stack /STK=8 /UG=Rn.6507 /UG_TITLE=ESTs AA849756 WD repeat domain 26 Wdr26 498301 NM_001109081 0005737 // cytoplasm // not recorded 1373454_at AI230689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230689 /DB_XREF=gi:3814576 /DB_XREF=EST227384 /CLONE=REMDA04 /FEA=EST /CNT=12 /TID=Rn.3055.1 /TIER=Stack /STK=8 /UG=Rn.3055 /UG_TITLE=ESTs AI230689 similar to RIKEN cDNA 0610037P05 RGD1305823 360461 NM_001108261 0034453 // microtubule anchoring // inferred from electronic annotation 0005813 // centrosome // inferred from electronic annotation 1373455_at BE115648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115648 /DB_XREF=gi:8507753 /DB_XREF=UI-R-BJ1-avy-d-01-0-UI.s1 /CLONE=UI-R-BJ1-avy-d-01-0-UI /FEA=EST /CNT=12 /TID=Rn.7397.1 /TIER=Stack /STK=8 /UG=Rn.7397 /UG_TITLE=ESTs BE115648 Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) Paf1 361531 NM_001024898 0006350 // transcription // inferred from electronic annotation /// 0010390 // histone monoubiquitination // inferred from electronic annotation /// 0010390 // histone monoubiquitination // not recorded /// 0033523 // histone H2B ubiquitination // inferred from electronic annotation /// 0033523 // histone H2B ubiquitination // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0016593 // Cdc73/Paf1 complex // inferred from electronic annotation /// 0016593 // Cdc73/Paf1 complex // not recorded 0005515 // protein binding // not recorded 1373456_at BI300764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300764 /DB_XREF=gi:14977044 /DB_XREF=UI-R-CV2-cij-c-07-0-UI.s1 /CLONE=UI-R-CV2-cij-c-07-0-UI /FEA=EST /CNT=12 /TID=Rn.41578.1 /TIER=Stack /STK=8 /UG=Rn.41578 /UG_TITLE=ESTs BI300764 ring finger protein 111 Rnf111 300813 NM_001106836 0007389 // pattern specification process // not recorded /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046332 // SMAD binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1373457_at AI170649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170649 /DB_XREF=gi:3710689 /DB_XREF=EST216584 /CLONE=RMUAZ44 /FEA=EST /CNT=12 /TID=Rn.16754.1 /TIER=Stack /STK=8 /UG=Rn.16754 /UG_TITLE=ESTs AI170649 inhibitor of growth family, member 1 Ing1 306626 NM_001038591 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373458_at BI289546 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289546 /DB_XREF=gi:14947228 /DB_XREF=UI-R-DK0-cff-c-12-0-UI.s1 /CLONE=UI-R-DK0-cff-c-12-0-UI /FEA=EST /CNT=12 /TID=Rn.9287.1 /TIER=Stack /STK=8 /UG=Rn.9287 /UG_TITLE=ESTs, Weakly similar to C35826 hypothetical 13K protein A (H.sapiens) BI289546 brain expressed gene 4 Bex4 501624 NM_001037554 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 1373459_at AI103051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103051 /DB_XREF=gi:3707653 /DB_XREF=EST212340 /CLONE=REMBW55 /FEA=EST /CNT=12 /TID=Rn.17056.1 /TIER=Stack /STK=8 /UG=Rn.17056 /UG_TITLE=ESTs AI103051 serine/threonine kinase 11 interacting protein Stk11ip 301535 NM_001106922 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded 1373460_at AI178790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178790 /DB_XREF=gi:3729428 /DB_XREF=EST222472 /CLONE=RSPBM63 /FEA=EST /CNT=12 /TID=Rn.2265.1 /TIER=Stack /STK=8 /UG=Rn.2265 /UG_TITLE=ESTs, Weakly similar to T31809 hypothetical protein M03F8.2 - Caenorhabditis elegans (C.elegans) AI178790 solute carrier family 35, member B2 Slc35b2 501103 NM_001037215 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0046963 // 3'-phosphoadenosine 5'-phosphosulfate transport // not recorded /// 0046963 // 3'-phosphoadenosine 5'-phosphosulfate transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0046964 // 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity // inferred from electronic annotation /// 0046964 // 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity // not recorded 1373461_at AI412649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412649 /DB_XREF=gi:4256153 /DB_XREF=EST240948 /CLONE=RBRDK85 /FEA=EST /CNT=12 /TID=Rn.9041.1 /TIER=Stack /STK=8 /UG=Rn.9041 /UG_TITLE=ESTs AI412649 retinoic acid induced 12 Rai12 287446 NM_001001718 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373462_at AI170325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170325 /DB_XREF=gi:3710365 /DB_XREF=EST216251 /CLONE=RLUCG93 /FEA=EST /CNT=12 /TID=Rn.3939.1 /TIER=Stack /STK=8 /UG=Rn.3939 /UG_TITLE=ESTs, Weakly similar to esc-P1 (Drosophila melanogaster) (D.melanogaster) AI170325 embryonic ectoderm development Eed 293104 NM_001106278 0006349 // regulation of gene expression by genetic imprinting // inferred from electronic annotation /// 0006349 // regulation of gene expression by genetic imprinting // not recorded /// 0016571 // histone methylation // inferred from electronic annotation /// 0016571 // histone methylation // not recorded 0001739 // sex chromatin // inferred from electronic annotation /// 0001739 // sex chromatin // not recorded /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0035098 // ESC/E(Z) complex // inferred from electronic annotation /// 0035098 // ESC/E(Z) complex // not recorded /// 0045120 // pronucleus // inferred from electronic annotation /// 0045120 // pronucleus // not recorded 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042054 // histone methyltransferase activity // not recorded /// 0042802 // identical protein binding // not recorded 1373463_at AI172281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172281 /DB_XREF=gi:3712321 /DB_XREF=EST218282 /CLONE=RMUBX30 /FEA=EST /CNT=12 /TID=Rn.9503.1 /TIER=Stack /STK=8 /UG=Rn.9503 /UG_TITLE=ESTs AI172281 collagen, type V, alpha 2 Col5a2 85250 NM_053488 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001503 // ossification // inferred from expression pattern /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0030199 // collagen fibril organization // not recorded /// 0043588 // skin development // inferred from electronic annotation /// 0043588 // skin development // not recorded /// 0048592 // eye morphogenesis // inferred from electronic annotation /// 0048592 // eye morphogenesis // not recorded 0005581 // collagen // inferred from electronic annotation /// 0005581 // collagen // not recorded /// 0005588 // collagen type V // not recorded /// 0005588 // collagen type V // traceable author statement /// 0005588 // collagen type V // inferred from electronic annotation 0005201 // extracellular matrix structural constituent // traceable author statement /// 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046332 // SMAD binding // not recorded 1373464_at BF418962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418962 /DB_XREF=gi:11406951 /DB_XREF=UI-R-BJ2-bqk-h-09-0-UI.s1 /CLONE=UI-R-BJ2-bqk-h-09-0-UI /FEA=EST /CNT=12 /TID=Rn.7336.1 /TIER=Stack /STK=8 /UG=Rn.7336 /UG_TITLE=ESTs BF418962 similar to TBC1 domain family member 22A LOC689443 689443 XM_001070809 1373465_at AI228284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228284 /DB_XREF=gi:3812171 /DB_XREF=EST224979 /CLONE=RBRCS77 /FEA=EST /CNT=11 /TID=Rn.17290.1 /TIER=Stack /STK=8 /UG=Rn.17290 /UG_TITLE=ESTs AI228284 PQ loop repeat containing 1 Pqlc1 361352 NM_001013189 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1373466_at AA946474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946474 /DB_XREF=gi:4132811 /DB_XREF=EST201973 /CLONE=ROVAR54 /FEA=EST /CNT=11 /TID=Rn.17481.1 /TIER=Stack /STK=8 /UG=Rn.17481 /UG_TITLE=ESTs AA946474 calpastatin Cast 25403 NM_001033715 /// NM_001033716 /// NM_053295 0007520 // myoblast fusion // inferred from expression pattern /// 0042176 // regulation of protein catabolic process // traceable author statement /// 0043086 // negative regulation of catalytic activity // inferred from direct assay 0002020 // protease binding // inferred by curator /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0010859 // calcium-dependent cysteine-type endopeptidase inhibitor activity // inferred from direct assay /// 0010859 // calcium-dependent cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1373467_at BG374179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374179 /DB_XREF=gi:13298651 /DB_XREF=UI-R-CV1-bsm-d-01-0-UI.s1 /CLONE=UI-R-CV1-bsm-d-01-0-UI /FEA=EST /CNT=11 /TID=Rn.1237.1 /TIER=Stack /STK=8 /UG=Rn.1237 /UG_TITLE=ESTs BG374179 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, (Mot1 homolog, S. cerevisiae) Btaf1 368042 NM_001191917 /// XM_001080159 /// XM_347206 0003677 // DNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1373468_at BI295896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295896 /DB_XREF=gi:14959801 /DB_XREF=UI-R-DK0-cfc-a-06-0-UI.s1 /CLONE=UI-R-DK0-cfc-a-06-0-UI /FEA=EST /CNT=11 /TID=Rn.34053.1 /TIER=Stack /STK=8 /UG=Rn.34053 /UG_TITLE=ESTs BI295896 1373469_at BF408841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408841 /DB_XREF=gi:11396816 /DB_XREF=UI-R-BS2-bet-a-09-0-UI.s1 /CLONE=UI-R-BS2-bet-a-09-0-UI /FEA=EST /CNT=11 /TID=Rn.767.1 /TIER=Stack /STK=8 /UG=Rn.767 /UG_TITLE=ESTs BF408841 similar to Butyrate-induced transcript 1 RGD1565496 300783 NM_001106831 1373470_at BM388896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388896 /DB_XREF=gi:18188949 /DB_XREF=UI-R-DZ0-ckn-b-09-0-UI.s1 /CLONE=UI-R-DZ0-ckn-b-09-0-UI /FEA=EST /CNT=11 /TID=Rn.265.2 /TIER=Stack /STK=8 /UG=Rn.265 /UG_TITLE=ESTs BM388896 1373471_at AI548624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548624 /DB_XREF=gi:4466112 /DB_XREF=UI-R-C3-te-d-08-0-UI.s1 /CLONE=UI-R-C3-te-d-08-0-UI /FEA=EST /CNT=11 /TID=Rn.43927.1 /TIER=Stack /STK=8 /UG=Rn.43927 /UG_TITLE=ESTs AI548624 ring finger protein 166 Rnf166 365022 NM_001002279 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373472_at AI177008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177008 /DB_XREF=gi:3727646 /DB_XREF=EST220615 /CLONE=ROVBZ68 /FEA=EST /CNT=11 /TID=Rn.16356.1 /TIER=Stack /STK=8 /UG=Rn.16356 /UG_TITLE=ESTs, Weakly similar to ACTB_HUMAN ACTIN, CYTOPLASMIC 1 (R.norvegicus) AI177008 ARP6 actin-related protein 6 homolog (yeast) Actr6 314718 NM_001108081 0005515 // protein binding // inferred from electronic annotation 1373473_a_at BM386384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386384 /DB_XREF=gi:18186437 /DB_XREF=UI-R-CN1-cjf-f-22-0-UI.s1 /CLONE=UI-R-CN1-cjf-f-22-0-UI /FEA=EST /CNT=11 /TID=Rn.18480.2 /TIER=Stack /STK=8 /UG=Rn.18480 /LL=89825 /UG_GENE=Nap1l1 /UG_TITLE=nucleosome assembly protein 1-like 1 BM386384 nucleosome assembly protein 1-like 1 Nap1l1 89825 NM_053561 0006334 // nucleosome assembly // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0005515 // protein binding // not recorded 1373474_at BE115948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115948 /DB_XREF=gi:8508053 /DB_XREF=UI-R-BS1-axx-g-06-0-UI.s1 /CLONE=UI-R-BS1-axx-g-06-0-UI /FEA=EST /CNT=11 /TID=Rn.12210.1 /TIER=Stack /STK=8 /UG=Rn.12210 /UG_TITLE=ESTs BE115948 similar to RIKEN cDNA 2810403A07 RGD1565775 361980 XM_001070697 /// XM_342277 1373475_at BM390469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390469 /DB_XREF=gi:18190522 /DB_XREF=UI-R-CN1-cjq-h-18-0-UI.s1 /CLONE=UI-R-CN1-cjq-h-18-0-UI /FEA=EST /CNT=11 /TID=Rn.3592.1 /TIER=Stack /STK=8 /UG=Rn.3592 /UG_TITLE=ESTs BM390469 coiled-coil domain containing 58 Ccdc58 288065 NM_001105875 0005739 // mitochondrion // not recorded 1373476_at AI410833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410833 /DB_XREF=gi:4254337 /DB_XREF=EST239126 /CLONE=RHECZ72 /FEA=EST /CNT=11 /TID=Rn.24425.1 /TIER=Stack /STK=8 /UG=Rn.24425 /UG_TITLE=ESTs AI410833 hypothetical protein LOC500251 LOC500251 500251 NM_001025047 1373477_at BM390306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390306 /DB_XREF=gi:18190359 /DB_XREF=UI-R-CN1-cjq-g-06-0-UI.s1 /CLONE=UI-R-CN1-cjq-g-06-0-UI /FEA=EST /CNT=11 /TID=Rn.3438.1 /TIER=Stack /STK=8 /UG=Rn.3438 /LL=56285 /UG_GENE=Rpml15 /UG_TITLE=ribosomal protein, mitochondrial, L15 BM390306 mitochondrial ribosomal protein L19 Mrpl19 297372 NM_001029898 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded 0003735 // structural constituent of ribosome // inferred from electronic annotation 1373478_at AI408557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408557 /DB_XREF=gi:4252061 /DB_XREF=EST236847 /CLONE=ROVEQ71 /FEA=EST /CNT=11 /TID=Rn.23666.1 /TIER=Stack /STK=8 /UG=Rn.23666 /UG_TITLE=ESTs, Moderately similar to norvegicus myosin binding protein H (Rattus norvegicus) (R.norvegicus) AI408557 1373479_at BE113127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113127 /DB_XREF=gi:8505232 /DB_XREF=UI-R-BJ1-awb-h-02-0-UI.s1 /CLONE=UI-R-BJ1-awb-h-02-0-UI /FEA=EST /CNT=11 /TID=Rn.18679.1 /TIER=Stack /STK=8 /UG=Rn.18679 /UG_TITLE=ESTs BE113127 Protein phosphatase 3 (formerly 2B), catalytic subunit, alpha isoform Ppp3ca 24674 NM_017041 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0001975 // response to amphetamine // inferred from expression pattern /// 0006470 // protein dephosphorylation // inferred from direct assay /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006606 // protein import into nucleus // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0006950 // response to stress // not recorded /// 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0045955 // negative regulation of calcium ion-dependent exocytosis // inferred by curator /// 0046676 // negative regulation of insulin secretion // inferred from mutant phenotype /// 0048741 // skeletal muscle fiber development // inferred from electronic annotation /// 0048741 // skeletal muscle fiber development // not recorded /// 0050804 // regulation of synaptic transmission // inferred from electronic annotation /// 0050804 // regulation of synaptic transmission // not recorded /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded /// 0071333 // cellular response to glucose stimulus // inferred from mutant phenotype 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005955 // calcineurin complex // inferred from direct assay /// 0005955 // calcineurin complex // not recorded /// 0005955 // calcineurin complex // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030018 // Z disc // inferred from electronic annotation /// 0030018 // Z disc // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // not recorded /// 0004722 // protein serine/threonine phosphatase activity // inferred from direct assay /// 0004723 // calcium-dependent protein serine/threonine phosphatase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from direct assay /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay 1373480_at BG670210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670210 /DB_XREF=gi:13892309 /DB_XREF=DRNABD06 /CLONE=DRNABD06 /FEA=EST /CNT=11 /TID=Rn.18598.1 /TIER=Stack /STK=8 /UG=Rn.18598 /UG_TITLE=ESTs BG670210 heat shock 70kDa protein 12A Hspa12a 307997 NM_001107445 0006950 // response to stress // inferred from electronic annotation 1373481_at AI227908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227908 /DB_XREF=gi:3811795 /DB_XREF=EST224603 /CLONE=RBRCN47 /FEA=EST /CNT=11 /TID=Rn.799.1 /TIER=Stack /STK=8 /UG=Rn.799 /UG_TITLE=ESTs, Weakly similar to T42644 hypothetical protein DKFZp566N1047.1 (H.sapiens) AI227908 R3H domain containing 1 R3hdm1 304763 NM_001134867 0003676 // nucleic acid binding // inferred from electronic annotation 1373482_at BI303106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303106 /DB_XREF=gi:14979386 /DB_XREF=UI-R-DQ0-ciz-g-13-0-UI.s1 /CLONE=UI-R-DQ0-ciz-g-13-0-UI /FEA=EST /CNT=11 /TID=Rn.12033.1 /TIER=Stack /STK=8 /UG=Rn.12033 /UG_TITLE=ESTs BI303106 Tnf receptor-associated factor 3 Traf3 362788 NM_001108724 0007165 // signal transduction // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0042981 // regulation of apoptosis // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373483_at AA963764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963764 /DB_XREF=gi:4278706 /DB_XREF=UI-R-E1-gk-e-01-0-UI.s1 /CLONE=UI-R-E1-gk-e-01-0-UI /FEA=EST /CNT=11 /TID=Rn.2440.1 /TIER=Stack /STK=8 /UG=Rn.2440 /UG_TITLE=ESTs, Weakly similar to NTC1 RAT NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1 PRECURSOR (R.norvegicus) AA963764 KN motif and ankyrin repeat domains 3 Kank3 366848 NM_001108989 1373484_at AI179828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179828 /DB_XREF=gi:3730466 /DB_XREF=EST223558 /CLONE=RSPCM48 /FEA=EST /CNT=11 /TID=Rn.24229.1 /TIER=Stack /STK=8 /UG=Rn.24229 /UG_TITLE=ESTs AI179828 kelch-like 13 (Drosophila) Klhl13 313445 XM_001061200 /// XM_002727661 /// XM_002730180 /// XM_233297 0000910 // cytokinesis // not recorded /// 0016567 // protein ubiquitination // not recorded 0031463 // Cul3-RING ubiquitin ligase complex // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1373485_at BE101485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101485 /DB_XREF=gi:8493400 /DB_XREF=UI-R-BJ1-auj-e-07-0-UI.s1 /CLONE=UI-R-BJ1-auj-e-07-0-UI /FEA=EST /CNT=11 /TID=Rn.21162.1 /TIER=Stack /STK=8 /UG=Rn.21162 /UG_TITLE=ESTs, Weakly similar to RRM1_HUMAN PUTATIVE RIBOSOMAL RNA METHYLTRANSFERASE 1 (H.sapiens) BE101485 similar to ring finger protein 122 homolog RGD1561238 502091 XM_001069254 /// XM_577531 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1373486_at BG375421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375421 /DB_XREF=gi:13299893 /DB_XREF=UI-R-CV1-btb-b-12-0-UI.s1 /CLONE=UI-R-CV1-btb-b-12-0-UI /FEA=EST /CNT=11 /TID=Rn.40771.1 /TIER=Stack /STK=8 /UG=Rn.40771 /UG_TITLE=ESTs BG375421 shisa homolog 4 (Xenopus laevis) Shisa4 360848 NM_001077826 0016021 // integral to membrane // inferred from electronic annotation 1373487_at AI030552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030552 /DB_XREF=gi:3248378 /DB_XREF=UI-R-C0-ji-h-05-0-UI.s1 /CLONE=UI-R-C0-ji-h-05-0-UI /FEA=EST /CNT=11 /TID=Rn.6377.1 /TIER=Stack /STK=8 /UG=Rn.6377 /UG_TITLE=ESTs AI030552 1373488_at BF289154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289154 /DB_XREF=gi:11220224 /DB_XREF=EST453745 /CLONE=RGIHB70 /FEA=EST /CNT=11 /TID=Rn.41269.1 /TIER=Stack /STK=8 /UG=Rn.41269 /UG_TITLE=ESTs BF289154 1373489_at AI012664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012664 /DB_XREF=gi:3226496 /DB_XREF=EST207115 /CLONE=RPLBA23 /FEA=EST /CNT=11 /TID=Rn.12758.1 /TIER=Stack /STK=8 /UG=Rn.12758 /UG_TITLE=ESTs, Highly similar to CAFA_MOUSE Chromatin assembly factor 1 subunit A (CAF-1 subunit A) (Chromatin assembly factor I p150 subunit) (CAF-I 150 kDa subunit) (CAF-Ip150) (M.musculus) AI012664 chromatin assembly factor 1, subunit A (p150) Chaf1a 363333 XM_001061702 /// XM_343671 0070603 // SWI/SNF-type complex // not recorded 0005515 // protein binding // not recorded /// 0070087 // chromo shadow domain binding // not recorded 1373490_at BG666787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666787 /DB_XREF=gi:13888709 /DB_XREF=DRABWG04 /CLONE=DRABWG04 /FEA=EST /CNT=11 /TID=Rn.15333.1 /TIER=Stack /STK=8 /UG=Rn.15333 /UG_TITLE=ESTs, Highly similar to JC7218 glia maturation factor-gamma - rat (R.norvegicus) BG666787 glia maturation factor, gamma Gmfg 113940 NM_181091 0005622 // intracellular // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0019207 // kinase regulator activity // non-traceable author statement 1373491_at BI276464 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276464 /DB_XREF=gi:14921391 /DB_XREF=UI-R-CX0-bwq-f-06-0-UI.s1 /CLONE=UI-R-CX0-bwq-f-06-0-UI /FEA=EST /CNT=11 /TID=Rn.9148.1 /TIER=Stack /STK=8 /UG=Rn.9148 /UG_TITLE=ESTs, Moderately similar to MTXN MOUSE METAXIN (M.musculus) BI276464 glucosidase, beta, acid Gba 684536 NM_001127639 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // inferred from electronic annotation /// 0007040 // lysosome organization // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004348 // glucosylceramidase activity // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation 1373492_at AA964545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964545 /DB_XREF=gi:4279419 /DB_XREF=UI-R-E1-go-a-06-0-UI.s1 /CLONE=UI-R-E1-go-a-06-0-UI /FEA=EST /CNT=11 /TID=Rn.3529.1 /TIER=Stack /STK=8 /UG=Rn.3529 /UG_TITLE=ESTs AA964545 succinate dehydrogenase complex assembly factor 2 Sdhaf2 361726 NM_001008371 0006121 // mitochondrial electron transport, succinate to ubiquinone // not recorded /// 0006121 // mitochondrial electron transport, succinate to ubiquinone // inferred from sequence or structural similarity /// 0006121 // mitochondrial electron transport, succinate to ubiquinone // inferred from electronic annotation /// 0018293 // protein-FAD linkage // not recorded /// 0018293 // protein-FAD linkage // inferred from sequence or structural similarity /// 0018293 // protein-FAD linkage // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373493_at AI070123 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070123 /DB_XREF=gi:3396374 /DB_XREF=UI-R-Y0-lu-d-07-0-UI.s1 /CLONE=UI-R-Y0-lu-d-07-0-UI /FEA=EST /CNT=11 /TID=Rn.20329.1 /TIER=Stack /STK=8 /UG=Rn.20329 /UG_TITLE=ESTs, Moderately similar to A59031 ARS component B 81S protein precursor (H.sapiens) AI070123 secreted Ly6/Plaur domain containing 1 Slurp1 300016 NM_001130544 1373494_at BE120831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120831 /DB_XREF=gi:8512936 /DB_XREF=UI-R-BS1-azt-a-06-0-UI.s1 /CLONE=UI-R-BS1-azt-a-06-0-UI /FEA=EST /CNT=11 /TID=Rn.12782.1 /TIER=Stack /STK=8 /UG=Rn.12782 /UG_TITLE=ESTs, Weakly similar to chimerin (chimaerin) 1 (Rattus norvegicus) (R.norvegicus) BE120831 breakpoint cluster region Bcr 309696 XM_001079915 /// XM_228091 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from direct assay /// 0051726 // regulation of cell cycle // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay 1373495_at AW915822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915822 /DB_XREF=gi:8081531 /DB_XREF=EST347126 /CLONE=RGIDB21 /FEA=EST /CNT=11 /TID=Rn.18843.1 /TIER=Stack /STK=8 /UG=Rn.18843 /UG_TITLE=ESTs, Weakly similar to T34195 hypothetical protein D1022.1 - Caenorhabditis elegans (C.elegans) AW915822 ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast) Ube2j1 297961 NM_001106642 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1373496_at AI137294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137294 /DB_XREF=gi:3638071 /DB_XREF=UI-R-C2p-ol-c-04-0-UI.s1 /CLONE=UI-R-C2p-ol-c-04-0-UI /FEA=EST /CNT=11 /TID=Rn.18076.1 /TIER=Stack /STK=8 /UG=Rn.18076 /UG_TITLE=ESTs, Highly similar to MKR1_MOUSE Makorin 1 (M.musculus) AI137294 makorin ring finger protein 1 Mkrn1 296988 NM_001004233 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373497_at BE109208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109208 /DB_XREF=gi:8501313 /DB_XREF=UI-R-BS1-azd-b-09-0-UI.s1 /CLONE=UI-R-BS1-azd-b-09-0-UI /FEA=EST /CNT=11 /TID=Rn.8042.1 /TIER=Stack /STK=8 /UG=Rn.8042 /UG_TITLE=ESTs BE109208 Homeodomain interacting protein kinase 2 Hipk2 362342 NM_001108622 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006978 // DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007224 // smoothened signaling pathway // not recorded /// 0007628 // adult walking behavior // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008344 // adult locomotory behavior // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded /// 0043388 // positive regulation of DNA binding // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046330 // positive regulation of JNK cascade // not recorded /// 0050882 // voluntary musculoskeletal movement // not recorded /// 0060395 // SMAD protein signal transduction // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0016604 // nuclear body // not recorded /// 0016605 // PML body // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0046332 // SMAD binding // not recorded /// 0046790 // virion binding // not recorded 1373498_at BI295924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295924 /DB_XREF=gi:14959856 /DB_XREF=UI-R-DK0-cfc-d-01-0-UI.s1 /CLONE=UI-R-DK0-cfc-d-01-0-UI /FEA=EST /CNT=11 /TID=Rn.2637.1 /TIER=Stack /STK=8 /UG=Rn.2637 /UG_TITLE=ESTs BI295924 vacuolar protein sorting 11 homolog (S. cerevisiae) Vps11 315600 NM_001108138 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from electronic annotation /// 0005884 // actin filament // not recorded /// 0005884 // actin filament // inferred from electronic annotation /// 0030897 // HOPS complex // not recorded /// 0030897 // HOPS complex // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373499_at BF287008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287008 /DB_XREF=gi:11218078 /DB_XREF=EST451599 /CLONE=RGIFX84 /FEA=EST /CNT=11 /TID=Rn.14733.1 /TIER=Stack /STK=8 /UG=Rn.14733 /UG_TITLE=ESTs BF287008 growth arrest specific 5 Gas5 81714 NR_002704 1373500_at BI294727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294727 /DB_XREF=gi:14957464 /DB_XREF=UI-R-DK0-ceb-d-04-0-UI.s1 /CLONE=UI-R-DK0-ceb-d-04-0-UI /FEA=EST /CNT=11 /TID=Rn.22349.1 /TIER=Stack /STK=8 /UG=Rn.22349 /UG_TITLE=ESTs, Moderately similar to L130_HUMAN 130 KD LEUCINE-RICH PROTEIN (H.sapiens) BI294727 leucine-rich PPR-motif containing Lrpprc 313867 NM_001008519 0006350 // transcription // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0000794 // condensed nuclear chromosome // not recorded /// 0000794 // condensed nuclear chromosome // inferred from sequence or structural similarity /// 0000794 // condensed nuclear chromosome // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005640 // nuclear outer membrane // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005856 // cytoskeleton // not recorded /// 0005856 // cytoskeleton // inferred from sequence or structural similarity /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0048487 // beta-tubulin binding // not recorded /// 0048487 // beta-tubulin binding // inferred from sequence or structural similarity /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded /// 0051015 // actin filament binding // inferred from sequence or structural similarity 1373501_at AA955361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955361 /DB_XREF=gi:4237717 /DB_XREF=UI-R-A1-ey-c-01-0-UI.s1 /CLONE=UI-R-A1-ey-c-01-0-UI /FEA=EST /CNT=11 /TID=Rn.3649.1 /TIER=Stack /STK=8 /UG=Rn.3649 /UG_TITLE=ESTs AA955361 NIMA (never in mitosis gene a)-related kinase 7 Nek7 360850 NM_001108346 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1373502_at BM389188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389188 /DB_XREF=gi:18189241 /DB_XREF=UI-R-DZ0-cko-a-22-0-UI.s1 /CLONE=UI-R-DZ0-cko-a-22-0-UI /FEA=EST /CNT=11 /TID=Rn.11539.1 /TIER=Stack /STK=8 /UG=Rn.11539 /UG_TITLE=ESTs, Weakly similar to T19999 hypothetical protein C47D12.2 - Caenorhabditis elegans (C.elegans) BM389188 dymeclin Dym 291433 NM_001106133 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation 1373503_at AA892504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892504 /DB_XREF=gi:3019383 /DB_XREF=EST196307 /CLONE=RKIAS25 /FEA=EST /CNT=19 /TID=Rn.24664.1 /TIER=Stack /STK=8 /UG=Rn.24664 /UG_TITLE=ESTs AA892504 leucine-rich repeats and calponin homology (CH) domain containing 4 Lrch4 360779 NM_001127551 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016605 // PML body // inferred from electronic annotation /// 0016605 // PML body // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded 1373504_at BF287967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287967 /DB_XREF=gi:11219037 /DB_XREF=EST452558 /CLONE=RGIGN17 /FEA=EST /CNT=19 /TID=Rn.1203.1 /TIER=Stack /STK=8 /UG=Rn.1203 /UG_TITLE=ESTs, Weakly similar to JE0204 testicular protein Tpx-1 - rat (R.norvegicus) BF287967 GLI pathogenesis-related 1 Glipr1 299783 NM_001011987 0005576 // extracellular region // inferred from electronic annotation 1373505_at BI287800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287800 /DB_XREF=gi:14943781 /DB_XREF=UI-R-CS0s-cbm-c-06-0-UI.s1 /CLONE=UI-R-CS0s-cbm-c-06-0-UI /FEA=EST /CNT=16 /TID=Rn.3641.1 /TIER=Stack /STK=8 /UG=Rn.3641 /UG_TITLE=ESTs BI287800 similar to stromal membrane-associated protein 1 LOC684800 684800 XM_001071989 /// XM_002727177 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1373506_at AA944568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944568 /DB_XREF=gi:3104484 /DB_XREF=EST200067 /CLONE=REMAL21 /FEA=EST /CNT=14 /TID=Rn.7804.1 /TIER=Stack /STK=8 /UG=Rn.7804 /UG_TITLE=ESTs AA944568 1373507_at AI232810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232810 /DB_XREF=gi:3816690 /DB_XREF=EST229498 /CLONE=RKICG88 /FEA=EST /CNT=14 /TID=Rn.22072.1 /TIER=Stack /STK=8 /UG=Rn.22072 /UG_TITLE=ESTs AI232810 Acyl-Coenzyme A binding domain containing 5 Acbd5 307170 NM_001077635 0006810 // transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000062 // acyl-CoA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation 1373508_at AI180004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180004 /DB_XREF=gi:3730642 /DB_XREF=EST223735 /CLONE=RSPCO75 /FEA=EST /CNT=13 /TID=Rn.23092.1 /TIER=Stack /STK=8 /UG=Rn.23092 /UG_TITLE=ESTs, Highly similar to SELT_MOUSE Selenoprotein T (M.musculus) AI180004 selenoprotein T Selt 365802 NM_001014253 0045454 // cell redox homeostasis // inferred from electronic annotation 0008430 // selenium binding // inferred from electronic annotation 1373509_at BE113288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113288 /DB_XREF=gi:8505433 /DB_XREF=UI-R-BJ1-awe-b-03-0-UI.s1 /CLONE=UI-R-BJ1-awe-b-03-0-UI /FEA=EST /CNT=13 /TID=Rn.6297.1 /TIER=Stack /STK=8 /UG=Rn.6297 /UG_TITLE=ESTs BE113288 NOL1/NOP2/Sun domain family, member 4 Nsun4 298426 NM_001106678 1373510_at BF281373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281373 /DB_XREF=gi:11212443 /DB_XREF=EST445964 /CLONE=RGIAD88 /FEA=EST /CNT=12 /TID=Rn.37516.2 /TIER=Stack /STK=8 /UG=Rn.37516 /LL=25624 /UG_GENE=Vamp1 /UG_TITLE=Synaptobrevin 1 BF281373 vesicle-associated membrane protein 1 Vamp1 25624 NM_013090 0006886 // intracellular protein transport // traceable author statement /// 0016192 // vesicle-mediated transport // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // not recorded 1373511_at BI296596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296596 /DB_XREF=gi:14961178 /DB_XREF=UI-R-CV2-cgt-a-12-0-UI.s1 /CLONE=UI-R-CV2-cgt-a-12-0-UI /FEA=EST /CNT=12 /TID=Rn.20255.1 /TIER=Stack /STK=8 /UG=Rn.20255 /UG_TITLE=ESTs BI296596 1373512_at BI295737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295737 /DB_XREF=gi:14959484 /DB_XREF=UI-R-DK0-cfa-a-06-0-UI.s1 /CLONE=UI-R-DK0-cfa-a-06-0-UI /FEA=EST /CNT=12 /TID=Rn.9512.1 /TIER=Stack /STK=8 /UG=Rn.9512 /UG_TITLE=ESTs, Weakly similar to T33164 hypothetical protein T26C12.1 - Caenorhabditis elegans (C.elegans) BI295737 ilvB (bacterial acetolactate synthase)-like Ilvbl 362843 NM_001108738 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030976 // thiamin pyrophosphate binding // inferred from electronic annotation 1373513_at AI012419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012419 /DB_XREF=gi:3226251 /DB_XREF=EST206870 /CLONE=RPLAX03 /FEA=EST /CNT=12 /TID=Rn.2987.1 /TIER=Stack /STK=8 /UG=Rn.2987 /UG_TITLE=ESTs AI012419 1373514_at AA899109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899109 /DB_XREF=gi:4231609 /DB_XREF=UI-R-E0-cw-d-07-0-UI.s1 /CLONE=UI-R-E0-cw-d-07-0-UI /FEA=EST /CNT=12 /TID=Rn.13847.1 /TIER=Stack /STK=8 /UG=Rn.13847 /UG_TITLE=ESTs AA899109 ring finger protein 213 Rnf213 303735 XM_001081768 /// XM_221191 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1373515_at BI275737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275737 /DB_XREF=gi:14919944 /DB_XREF=UI-R-CX0-bxg-a-12-0-UI.s1 /CLONE=UI-R-CX0-bxg-a-12-0-UI /FEA=EST /CNT=11 /TID=Rn.17651.1 /TIER=Stack /STK=8 /UG=Rn.17651 /UG_TITLE=ESTs BI275737 galectin-related protein Hspc159 360983 NM_001134730 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 0005529 // sugar binding // inferred from electronic annotation 1373516_at BE099830 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099830 /DB_XREF=gi:8491711 /DB_XREF=UI-R-BJ1-atq-g-01-0-UI.s1 /CLONE=UI-R-BJ1-atq-g-01-0-UI /FEA=EST /CNT=11 /TID=Rn.1958.1 /TIER=Stack /STK=8 /UG=Rn.1958 /UG_TITLE=ESTs BE099830 1373517_at BG671501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671501 /DB_XREF=gi:13893600 /DB_XREF=DRNBTA09 /CLONE=DRNBTA09 /FEA=EST /CNT=11 /TID=Rn.23019.1 /TIER=Stack /STK=8 /UG=Rn.23019 /UG_TITLE=ESTs BG671501 conserved helix-loop-helix ubiquitous kinase Chuk 309361 NM_001107588 0001101 // response to acid // inferred from expression pattern /// 0002011 // morphogenesis of an epithelial sheet // not recorded /// 0002011 // morphogenesis of an epithelial sheet // inferred from electronic annotation /// 0003009 // skeletal muscle contraction // inferred from expression pattern /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // inferred from mutant phenotype /// 0007595 // lactation // not recorded /// 0007595 // lactation // inferred from electronic annotation /// 0009636 // response to toxin // inferred from expression pattern /// 0010033 // response to organic substance // inferred from direct assay /// 0016310 // phosphorylation // not recorded /// 0030316 // osteoclast differentiation // not recorded /// 0030316 // osteoclast differentiation // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from direct assay /// 0033194 // response to hydroperoxide // inferred from expression pattern /// 0033598 // mammary gland epithelial cell proliferation // not recorded /// 0033598 // mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0051146 // striated muscle cell differentiation // inferred from mutant phenotype /// 0060749 // mammary gland alveolus development // not recorded /// 0060749 // mammary gland alveolus development // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0008385 // IkappaB kinase complex // inferred from physical interaction /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008384 // IkappaB kinase activity // inferred from direct assay /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1373518_at AA866231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866231 /DB_XREF=gi:4229103 /DB_XREF=UI-R-A0-bg-f-06-0-UI.s1 /CLONE=UI-R-A0-bg-f-06-0-UI /FEA=EST /CNT=11 /TID=Rn.3006.1 /TIER=Stack /STK=8 /UG=Rn.3006 /UG_TITLE=ESTs AA866231 1373519_at AI412601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412601 /DB_XREF=gi:4256105 /DB_XREF=EST240900 /CLONE=RBRDK40 /FEA=EST /CNT=11 /TID=Rn.13474.1 /TIER=Stack /STK=8 /UG=Rn.13474 /UG_TITLE=ESTs AI412601 1373520_at BI285960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285960 /DB_XREF=gi:14940132 /DB_XREF=UI-R-CX0s-ccp-g-12-0-UI.s1 /CLONE=UI-R-CX0s-ccp-g-12-0-UI /FEA=EST /CNT=11 /TID=Rn.7344.1 /TIER=Stack /STK=8 /UG=Rn.7344 /UG_TITLE=ESTs BI285960 1373521_at BF283122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283122 /DB_XREF=gi:11214192 /DB_XREF=EST447713 /CLONE=RGIDX81 /FEA=EST /CNT=11 /TID=Rn.24687.1 /TIER=Stack /STK=8 /UG=Rn.24687 /UG_TITLE=ESTs BF283122 SH3 domain and tetratricopeptide repeats 2 Sh3tc2 307393 XM_001059165 /// XM_002725348 /// XM_002728559 /// XM_225887 0005488 // binding // inferred from electronic annotation 1373522_at BM385074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385074 /DB_XREF=gi:18185127 /DB_XREF=UI-R-CN1-cjm-l-01-0-UI.s9 /CLONE=UI-R-CN1-cjm-l-01-0-UI /FEA=EST /CNT=11 /TID=Rn.20312.1 /TIER=Stack /STK=8 /UG=Rn.20312 /UG_TITLE=ESTs BM385074 1373523_at AI011757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011757 /DB_XREF=gi:3225589 /DB_XREF=EST206208 /CLONE=ROVAZ74 /FEA=EST /CNT=11 /TID=Rn.23977.1 /TIER=Stack /STK=8 /UG=Rn.23977 /UG_TITLE=ESTs, Weakly similar to A35902 Fc gamma (R.norvegicus) AI011757 Fc fragment of IgG, low affinity IIIa, receptor Fcgr3a 304966 NM_207603 0001866 // NK T cell proliferation // inferred from direct assay /// 0006955 // immune response // traceable author statement /// 0042060 // wound healing // inferred from expression pattern 0005886 // plasma membrane // not recorded /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0019864 // IgG binding // traceable author statement 1373524_at AA946482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946482 /DB_XREF=gi:4132815 /DB_XREF=EST201981 /CLONE=ROVAR64 /FEA=EST /CNT=11 /TID=Rn.18636.1 /TIER=Stack /STK=8 /UG=Rn.18636 /UG_TITLE=ESTs AA946482 1373525_at AI113011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113011 /DB_XREF=gi:3512960 /DB_XREF=UI-R-C0-gt-e-05-0-UI.s1 /CLONE=UI-R-C0-gt-e-05-0-UI /FEA=EST /CNT=11 /TID=Rn.22096.1 /TIER=Stack /STK=8 /UG=Rn.22096 /UG_TITLE=ESTs AI113011 1373526_at AI105153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105153 /DB_XREF=gi:3709305 /DB_XREF=EST214442 /CLONE=RKIBG28 /FEA=EST /CNT=11 /TID=Rn.40171.1 /TIER=Stack /STK=8 /UG=Rn.40171 /UG_TITLE=ESTs AI105153 ATG5 autophagy related 5 homolog (S. cerevisiae) Atg5 365601 NM_001014250 0000045 // autophagic vacuole assembly // inferred from mutant phenotype /// 0000045 // autophagic vacuole assembly // not recorded /// 0000045 // autophagic vacuole assembly // inferred from electronic annotation /// 0001974 // blood vessel remodeling // not recorded /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0006914 // autophagy // not recorded /// 0031397 // negative regulation of protein ubiquitination // not recorded /// 0031397 // negative regulation of protein ubiquitination // inferred from electronic annotation /// 0042311 // vasodilation // not recorded /// 0042311 // vasodilation // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043687 // post-translational protein modification // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0055015 // ventricular cardiac muscle cell development // not recorded /// 0055015 // ventricular cardiac muscle cell development // inferred from electronic annotation /// 0060047 // heart contraction // not recorded /// 0060047 // heart contraction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005776 // autophagic vacuole // not recorded /// 0005776 // autophagic vacuole // inferred from electronic annotation /// 0034045 // pre-autophagosomal structure membrane // not recorded /// 0034045 // pre-autophagosomal structure membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1373527_at BI275677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275677 /DB_XREF=gi:14919825 /DB_XREF=UI-R-CW0-bwm-d-05-0-UI.s1 /CLONE=UI-R-CW0-bwm-d-05-0-UI /FEA=EST /CNT=11 /TID=Rn.11674.1 /TIER=Stack /STK=8 /UG=Rn.11674 /UG_TITLE=ESTs, Weakly similar to T12482 hypothetical protein DKFZp564P0662.1 (H.sapiens) BI275677 rCG48622-like LOC100362920 100362920 XM_002725783 /// XM_002728863 1373528_at AI407827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407827 /DB_XREF=gi:4251331 /DB_XREF=EST236117 /CLONE=ROVEC15 /FEA=EST /CNT=11 /TID=Rn.11530.1 /TIER=Stack /STK=8 /UG=Rn.11530 /UG_TITLE=ESTs AI407827 phosphoinositide-3-kinase, catalytic, delta polypeptide Pik3cd 366508 NM_001108978 0001782 // B cell homeostasis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0042113 // B cell activation // not recorded /// 0046854 // phosphoinositide phosphorylation // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation 0005942 // phosphoinositide 3-kinase complex // inferred from electronic annotation 0004428 // inositol or phosphatidylinositol kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0046934 // phosphatidylinositol-4,5-bisphosphate 3-kinase activity // inferred from electronic annotation 1373529_at BE117883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117883 /DB_XREF=gi:8509988 /DB_XREF=UI-R-BS1-azm-b-04-0-UI.s1 /CLONE=UI-R-BS1-azm-b-04-0-UI /FEA=EST /CNT=11 /TID=Rn.18405.1 /TIER=Stack /STK=8 /UG=Rn.18405 /UG_TITLE=ESTs BE117883 1373530_at AW913890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW913890 /DB_XREF=gi:8079603 /DB_XREF=EST292529 /CLONE=RGIAU96 /FEA=EST /CNT=11 /TID=Rn.15455.1 /TIER=Stack /STK=8 /UG=Rn.15455 /UG_TITLE=ESTs, Highly similar to CGE1 RAT G1S-SPECIFIC CYCLIN E1 (R.norvegicus) AW913890 cyclin E1 Ccne1 25729 NM_001100821 0001547 // antral ovarian follicle growth // inferred from expression pattern /// 0001889 // liver development // inferred from expression pattern /// 0006270 // DNA-dependent DNA replication initiation // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014074 // response to purine // inferred from expression pattern /// 0031100 // organ regeneration // inferred from expression pattern /// 0031670 // cellular response to nutrient // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0033197 // response to vitamin E // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042325 // regulation of phosphorylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0045597 // positive regulation of cell differentiation // inferred from direct assay /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0050790 // regulation of catalytic activity // not recorded /// 0051301 // cell division // inferred from electronic annotation /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0051597 // response to methylmercury // inferred from expression pattern /// 0051726 // regulation of cell cycle // not recorded 0000307 // cyclin-dependent protein kinase holoenzyme complex // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016538 // cyclin-dependent protein kinase regulator activity // not recorded /// 0032403 // protein complex binding // inferred from physical interaction 1373531_at AI600198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600198 /DB_XREF=gi:4609246 /DB_XREF=EST251901 /CLONE=REMEC81 /FEA=EST /CNT=11 /TID=Rn.40455.1 /TIER=Stack /STK=8 /UG=Rn.40455 /UG_TITLE=ESTs, Highly similar to cleavage and polyadenylation specificity factor 1; CPSF160 (Mus musculus) (M.musculus) AI600198 cleavage and polyadenylation specific factor 1 Cpsf1 366952 NM_001130571 0006378 // mRNA polyadenylation // not recorded /// 0006378 // mRNA polyadenylation // inferred from electronic annotation /// 0006379 // mRNA cleavage // not recorded /// 0006379 // mRNA cleavage // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005847 // mRNA cleavage and polyadenylation specificity factor complex // not recorded /// 0005847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // not recorded /// 0003730 // mRNA 3'-UTR binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1373532_at BI276934 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276934 /DB_XREF=gi:14922322 /DB_XREF=UI-R-CW0-bxo-b-09-0-UI.s1 /CLONE=UI-R-CW0-bxo-b-09-0-UI /FEA=EST /CNT=11 /TID=Rn.9380.1 /TIER=Stack /STK=8 /UG=Rn.9380 /UG_TITLE=ESTs BI276934 pleckstrin homology domain containing, family F (with FYVE domain) member 1 Plekhf1 308543 NM_001013148 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373533_at AI412460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412460 /DB_XREF=gi:4255964 /DB_XREF=EST240759 /CLONE=RBRDO52 /FEA=EST /CNT=11 /TID=Rn.18694.1 /TIER=Stack /STK=8 /UG=Rn.18694 /UG_TITLE=ESTs AI412460 1373534_at BE107209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107209 /DB_XREF=gi:8499314 /DB_XREF=UI-R-BS1-ayr-b-05-0-UI.s1 /CLONE=UI-R-BS1-ayr-b-05-0-UI /FEA=EST /CNT=10 /TID=Rn.13680.1 /TIER=Stack /STK=8 /UG=Rn.13680 /UG_TITLE=ESTs, Moderately similar to T12483 hypothetical protein DKFZp564B0769.1 (H.sapiens) BE107209 splicing factor, arginine/serine-rich 18 Sfrs18 297942 NM_001025274 1373535_at BF397848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397848 /DB_XREF=gi:11382832 /DB_XREF=UI-R-BS2-bec-d-02-0-UI.s1 /CLONE=UI-R-BS2-bec-d-02-0-UI /FEA=EST /CNT=10 /TID=Rn.8947.1 /TIER=Stack /STK=8 /UG=Rn.8947 /UG_TITLE=ESTs, Weakly similar to RNB6 (Rattus norvegicus) (R.norvegicus) BF397848 enabled homolog (Drosophila) Enah 360891 NM_001012150 0001843 // neural tube closure // not recorded /// 0006928 // cellular component movement // not recorded /// 0007015 // actin filament organization // not recorded /// 0007411 // axon guidance // not recorded /// 0008154 // actin polymerization or depolymerization // not recorded /// 0030036 // actin cytoskeleton organization // not recorded /// 0046907 // intracellular transport // inferred from electronic annotation 0001725 // stress fiber // not recorded /// 0005829 // cytosol // not recorded /// 0005925 // focal adhesion // not recorded /// 0030027 // lamellipodium // not recorded /// 0030175 // filopodium // not recorded 0005515 // protein binding // not recorded /// 0005522 // profilin binding // not recorded /// 0017124 // SH3 domain binding // not recorded /// 0050699 // WW domain binding // not recorded 1373536_at AW525196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525196 /DB_XREF=gi:7167581 /DB_XREF=UI-R-BJ0p-aio-h-09-0-UI.s1 /CLONE=UI-R-BJ0p-aio-h-09-0-UI /FEA=EST /CNT=10 /TID=Rn.15245.1 /TIER=Stack /STK=8 /UG=Rn.15245 /UG_TITLE=ESTs AW525196 1373537_at BE113175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113175 /DB_XREF=gi:8505280 /DB_XREF=UI-R-BJ1-awc-d-05-0-UI.s1 /CLONE=UI-R-BJ1-awc-d-05-0-UI /FEA=EST /CNT=10 /TID=Rn.20445.1 /TIER=Stack /STK=8 /UG=Rn.20445 /UG_TITLE=ESTs BE113175 1373538_at AW525342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525342 /DB_XREF=gi:7167727 /DB_XREF=UI-R-BJ0p-aiq-e-12-0-UI.s1 /CLONE=UI-R-BJ0p-aiq-e-12-0-UI /FEA=EST /CNT=10 /TID=Rn.20129.1 /TIER=Stack /STK=8 /UG=Rn.20129 /UG_TITLE=ESTs, Highly similar to T17277 hypothetical protein DKFZp434E0635.1 (H.sapiens) AW525342 ubiquitin specific peptidase 1 Usp1 313387 NM_001015015 0006281 // DNA repair // inferred from electronic annotation /// 0006282 // regulation of DNA repair // not recorded /// 0006282 // regulation of DNA repair // inferred from sequence or structural similarity /// 0006282 // regulation of DNA repair // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0009411 // response to UV // not recorded /// 0009411 // response to UV // inferred from sequence or structural similarity /// 0009411 // response to UV // inferred from electronic annotation /// 0016579 // protein deubiquitination // not recorded /// 0016579 // protein deubiquitination // inferred from sequence or structural similarity /// 0016579 // protein deubiquitination // inferred from electronic annotation /// 0035520 // monoubiquitinated protein deubiquitination // not recorded /// 0035520 // monoubiquitinated protein deubiquitination // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0004221 // ubiquitin thiolesterase activity // not recorded /// 0004221 // ubiquitin thiolesterase activity // inferred from sequence or structural similarity /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0004843 // ubiquitin-specific protease activity // inferred from sequence or structural similarity /// 0004843 // ubiquitin-specific protease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1373539_at BG380686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380686 /DB_XREF=gi:13305158 /DB_XREF=UI-R-CT0-bua-c-07-0-UI.s1 /CLONE=UI-R-CT0-bua-c-07-0-UI /FEA=EST /CNT=10 /TID=Rn.1552.1 /TIER=Stack /STK=8 /UG=Rn.1552 /UG_TITLE=ESTs BG380686 1373540_at AA848306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848306 /DB_XREF=gi:4131628 /DB_XREF=EST191066 /CLONE=RHEAL19 /FEA=EST /CNT=10 /TID=Rn.3624.1 /TIER=Stack /STK=8 /UG=Rn.3624 /UG_TITLE=ESTs, Highly similar to ROA2 MOUSE HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEINS A2B1 (M.musculus) AA848306 1373541_at BG377320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377320 /DB_XREF=gi:13301792 /DB_XREF=UI-R-CU0-bvc-a-12-0-UI.s1 /CLONE=UI-R-CU0-bvc-a-12-0-UI /FEA=EST /CNT=10 /TID=Rn.22808.1 /TIER=Stack /STK=8 /UG=Rn.22808 /UG_TITLE=ESTs BG377320 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1373542_at BM386306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386306 /DB_XREF=gi:18186359 /DB_XREF=UI-R-CN1-cjf-h-09-0-UI.s1 /CLONE=UI-R-CN1-cjf-h-09-0-UI /FEA=EST /CNT=10 /TID=Rn.37032.1 /TIER=Stack /STK=8 /UG=Rn.37032 /UG_TITLE=ESTs, Moderately similar to SPH2_MOUSE Sphingosine kinase 2 (SK 2) (SPK 2) (M.musculus) BM386306 sphingosine kinase 2 Sphk2 308589 NM_001012066 0001568 // blood vessel development // not recorded /// 0006670 // sphingosine metabolic process // not recorded /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007565 // female pregnancy // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // not recorded /// 0016310 // phosphorylation // not recorded 0005624 // membrane fraction // not recorded /// 0005829 // cytosol // not recorded 0004143 // diacylglycerol kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0017050 // D-erythro-sphingosine kinase activity // not recorded 1373543_at BI296461 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296461 /DB_XREF=gi:14960906 /DB_XREF=UI-R-CV2-cgr-e-02-0-UI.s1 /CLONE=UI-R-CV2-cgr-e-02-0-UI /FEA=EST /CNT=10 /TID=Rn.15116.1 /TIER=Stack /STK=8 /UG=Rn.15116 /UG_TITLE=ESTs BI296461 1373544_at AI170387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170387 /DB_XREF=gi:3710427 /DB_XREF=EST216313 /CLONE=RLUCH67 /FEA=EST /CNT=10 /TID=Rn.7391.1 /TIER=Stack /STK=8 /UG=Rn.7391 /UG_TITLE=ESTs AI170387 chemokine (C-X-C motif) ligand 9 Cxcl9 246759 NM_145672 0006955 // immune response // inferred from electronic annotation /// 0050930 // induction of positive chemotaxis // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded 0008009 // chemokine activity // traceable author statement /// 0008009 // chemokine activity // inferred from electronic annotation /// 0048248 // CXCR3 chemokine receptor binding // traceable author statement 1373545_at AI406964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406964 /DB_XREF=gi:4250468 /DB_XREF=EST235252 /CLONE=ROVDW93 /FEA=EST /CNT=10 /TID=Rn.22219.1 /TIER=Stack /STK=8 /UG=Rn.22219 /UG_TITLE=ESTs AI406964 1373546_at AI409922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409922 /DB_XREF=gi:4253426 /DB_XREF=EST238215 /CLONE=RPLDN38 /FEA=EST /CNT=10 /TID=Rn.23959.1 /TIER=Stack /STK=8 /UG=Rn.23959 /UG_TITLE=ESTs AI409922 ATPase, class VI, type 11A Atp11a 306600 NM_001107324 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0015914 // phospholipid transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004012 // phospholipid-translocating ATPase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation 1373547_at AA849782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849782 /DB_XREF=gi:2937322 /DB_XREF=EST192549 /CLONE=RMUAI78 /FEA=EST /CNT=10 /TID=Rn.6513.1 /TIER=Stack /STK=8 /UG=Rn.6513 /UG_TITLE=ESTs AA849782 similar to expressed sequence AW209491 RGD1308147 307008 NM_001014010 1373548_at BE107518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107518 /DB_XREF=gi:8499623 /DB_XREF=UI-R-BS1-ayu-f-06-0-UI.s1 /CLONE=UI-R-BS1-ayu-f-06-0-UI /FEA=EST /CNT=10 /TID=Rn.3104.1 /TIER=Stack /STK=8 /UG=Rn.3104 /UG_TITLE=ESTs BE107518 DDB1 and CUL4 associated factor 7 Dcaf7 303602 NM_001107057 0080008 // CUL4 RING ubiquitin ligase complex // inferred from electronic annotation /// 0080008 // CUL4 RING ubiquitin ligase complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373549_at BE105699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105699 /DB_XREF=gi:8497841 /DB_XREF=UI-R-BO1-asi-e-04-0-UI.s1 /CLONE=UI-R-BO1-asi-e-04-0-UI /FEA=EST /CNT=10 /TID=Rn.12705.1 /TIER=Stack /STK=8 /UG=Rn.12705 /UG_TITLE=ESTs, Moderately similar to 2210303A RNA helicase (H.sapiens) BE105699 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 Ddx10 300710 NM_001106820 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1373550_at BI280318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280318 /DB_XREF=gi:14928982 /DB_XREF=UI-R-DE0-cag-e-07-0-UI.s1 /CLONE=UI-R-DE0-cag-e-07-0-UI /FEA=EST /CNT=10 /TID=Rn.9308.1 /TIER=Stack /STK=8 /UG=Rn.9308 /UG_TITLE=ESTs BI280318 tripartite motif-containing 11 Trim11 360534 NM_001108276 0009615 // response to virus // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1373551_at AA817753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817753 /DB_XREF=gi:4198282 /DB_XREF=UI-R-A0-ad-a-08-0-UI.s1 /CLONE=UI-R-A0-ad-a-08-0-UI /FEA=EST /CNT=10 /TID=Rn.2635.1 /TIER=Stack /STK=8 /UG=Rn.2635 /UG_TITLE=ESTs AA817753 similar to KIAA0614 protein RGD1309762 304503 XM_001079719 /// XM_222205 0006464 // protein modification process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1373552_at AW531852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531852 /DB_XREF=gi:7174266 /DB_XREF=UI-R-BS0-amj-a-05-0-UI.s1 /CLONE=UI-R-BS0-amj-a-05-0-UI /FEA=EST /CNT=10 /TID=Rn.19974.1 /TIER=Stack /STK=8 /UG=Rn.19974 /UG_TITLE=ESTs, Weakly similar to dJ475B7.2 (H.sapiens) AW531852 LAS1-like (S. cerevisiae) Las1l 296865 NM_001170590 /// XM_001067427 /// XM_216095 0071339 // MLL1 complex // not recorded 0005515 // protein binding // not recorded 1373553_at AI233765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233765 /DB_XREF=gi:3817645 /DB_XREF=EST230453 /CLONE=RKIDJ78 /FEA=EST /CNT=10 /TID=Rn.23773.1 /TIER=Stack /STK=8 /UG=Rn.23773 /UG_TITLE=ESTs, Highly similar to TP3B MOUSE DNA TOPOISOMERASE III BETA-1 (M.musculus) AI233765 topoisomerase (DNA) III beta Top3b 287930 NM_001105861 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006265 // DNA topological change // inferred from electronic annotation /// 0006268 // DNA unwinding involved in replication // inferred from electronic annotation /// 0007059 // chromosome segregation // not recorded 0000793 // condensed chromosome // not recorded /// 0005694 // chromosome // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003916 // DNA topoisomerase activity // inferred from electronic annotation /// 0003917 // DNA topoisomerase type I activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation 1373554_at BE349698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE349698 /DB_XREF=gi:9261551 /DB_XREF=hq41g06.x1 /CLONE=IMAGE:3121978 /FEA=EST /CNT=10 /TID=Rn.8693.1 /TIER=Stack /STK=8 /UG=Rn.8693 /UG_TITLE=ESTs BE349698 1373555_at BM392315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392315 /DB_XREF=gi:18192368 /DB_XREF=UI-R-DO1-ckp-f-18-0-UI.s1 /CLONE=UI-R-DO1-ckp-f-18-0-UI /FEA=EST /CNT=10 /TID=Rn.23927.1 /TIER=Stack /STK=8 /UG=Rn.23927 /UG_TITLE=ESTs BM392315 1373556_at AI237593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237593 /DB_XREF=gi:4136341 /DB_XREF=EST234155 /CLONE=RPLDB23 /FEA=EST /CNT=10 /TID=Rn.8319.1 /TIER=Stack /STK=8 /UG=Rn.8319 /UG_TITLE=ESTs AI237593 similar to CG14903-PA RGD1561792 298861 NM_001134524 0006412 // translation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // inferred from electronic annotation 0004045 // aminoacyl-tRNA hydrolase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation 1373557_at AI145081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145081 /DB_XREF=gi:3666880 /DB_XREF=UI-R-BT0-pt-g-06-0-UI.s1 /CLONE=UI-R-BT0-pt-g-06-0-UI /FEA=EST /CNT=10 /TID=Rn.8341.1 /TIER=Stack /STK=8 /UG=Rn.8341 /UG_TITLE=ESTs, Highly similar to DNA REPLICATION LICENSING FACTOR MCM4 (M.musculus) AI145081 minichromosome maintenance complex component 4 Mcm4 29728 NM_033651 0006260 // DNA replication // not recorded /// 0006268 // DNA unwinding involved in replication // inferred from electronic annotation /// 0006268 // DNA unwinding involved in replication // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded 0003678 // DNA helicase activity // inferred from electronic annotation /// 0003678 // DNA helicase activity // not recorded /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373558_at BF396446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396446 /DB_XREF=gi:11381418 /DB_XREF=UI-R-BS2-bdy-c-05-0-UI.s1 /CLONE=UI-R-BS2-bdy-c-05-0-UI /FEA=EST /CNT=10 /TID=Rn.63680.1 /TIER=Stack /STK=8 /UG=Rn.63680 /UG_TITLE=ESTs BF396446 1373559_at AI228623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228623 /DB_XREF=gi:3812510 /DB_XREF=EST225318 /CLONE=RBRCX30 /FEA=EST /CNT=10 /TID=Rn.7464.1 /TIER=Stack /STK=8 /UG=Rn.7464 /UG_TITLE=ESTs AI228623 1373560_at AI233172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233172 /DB_XREF=gi:3817052 /DB_XREF=EST229860 /CLONE=RKICL75 /FEA=EST /CNT=10 /TID=Rn.24701.1 /TIER=Stack /STK=8 /UG=Rn.24701 /UG_TITLE=ESTs AI233172 mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B Mgat4b 303100 NM_001127533 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1373561_at AI012498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012498 /DB_XREF=gi:3226330 /DB_XREF=EST206949 /CLONE=RPLAY05 /FEA=EST /CNT=10 /TID=Rn.3794.1 /TIER=Stack /STK=8 /UG=Rn.3794 /UG_TITLE=ESTs AI012498 chondroitin polymerizing factor Chpf 316533 NM_001005906 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1373562_at BF416880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416880 /DB_XREF=gi:11404869 /DB_XREF=UI-R-CN0-bla-b-06-0-UI.s1 /CLONE=UI-R-CN0-bla-b-06-0-UI /FEA=EST /CNT=10 /TID=Rn.17962.1 /TIER=Stack /STK=8 /UG=Rn.17962 /UG_TITLE=ESTs BF416880 integrator complex subunit 5 Ints5 309200 NM_001107576 0016180 // snRNA processing // not recorded 0032039 // integrator complex // not recorded 0005515 // protein binding // not recorded 1373563_at H35156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H35156 /DB_XREF=gi:980573 /DB_XREF=EST106360 /CLONE=RPCAZ76 /FEA=EST /CNT=10 /TID=Rn.6767.1 /TIER=Stack /STK=8 /UG=Rn.6767 /UG_TITLE=ESTs, Highly similar to I38191 nucleic acid binding protein (H.sapiens) H35156 small nuclear ribonucleoprotein 27kDa (U4/U6.U5) Snrnp27 362392 NM_001108636 1373564_at AI410548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410548 /DB_XREF=gi:4254052 /DB_XREF=EST238841 /CLONE=RHECY11 /FEA=EST /CNT=10 /TID=Rn.7565.1 /TIER=Stack /STK=8 /UG=Rn.7565 /UG_TITLE=ESTs AI410548 3-hydroxyisobutyryl-Coenzyme A hydrolase Hibch 301384 NM_001013112 0008152 // metabolic process // inferred from electronic annotation /// 0009083 // branched chain family amino acid catabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0003860 // 3-hydroxyisobutyryl-CoA hydrolase activity // inferred from electronic annotation /// 0003860 // 3-hydroxyisobutyryl-CoA hydrolase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1373565_at BE329013 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329013 /DB_XREF=gi:9202789 /DB_XREF=hq32f06.x1 /CLONE=IMAGE:3121091 /FEA=EST /CNT=10 /TID=Rn.23417.1 /TIER=Stack /STK=8 /UG=Rn.23417 /UG_TITLE=ESTs, Highly similar to 2020285A BRG1 protein (M.musculus) BE329013 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 Smarca4 171379 NM_134368 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001832 // blastocyst growth // not recorded /// 0001832 // blastocyst growth // inferred from electronic annotation /// 0001835 // blastocyst hatching // not recorded /// 0001835 // blastocyst hatching // inferred from electronic annotation /// 0006337 // nucleosome disassembly // inferred from direct assay /// 0006338 // chromatin remodeling // not recorded /// 0006346 // methylation-dependent chromatin silencing // not recorded /// 0006346 // methylation-dependent chromatin silencing // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007403 // glial cell fate determination // not recorded /// 0007403 // glial cell fate determination // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // not recorded /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0030902 // hindbrain development // not recorded /// 0030902 // hindbrain development // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048730 // epidermis morphogenesis // not recorded /// 0048730 // epidermis morphogenesis // inferred from electronic annotation /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0060347 // heart trabecula formation // not recorded /// 0060347 // heart trabecula formation // inferred from electronic annotation 0000792 // heterochromatin // not recorded /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005719 // nuclear euchromatin // not recorded /// 0005719 // nuclear euchromatin // inferred from electronic annotation /// 0005726 // perichromatin fibrils // not recorded /// 0005726 // perichromatin fibrils // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0016514 // SWI/SNF complex // inferred from direct assay /// 0016514 // SWI/SNF complex // not recorded /// 0070603 // SWI/SNF-type complex // not recorded /// 0071564 // npBAF complex // not recorded /// 0071564 // npBAF complex // inferred from sequence or structural similarity /// 0071564 // npBAF complex // inferred from electronic annotation /// 0071565 // nBAF complex // not recorded /// 0071565 // nBAF complex // inferred from sequence or structural similarity /// 0071565 // nBAF complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0002039 // p53 binding // not recorded /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from sequence or structural similarity /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred by curator /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0047485 // protein N-terminus binding // not recorded /// 0070577 // histone acetyl-lysine binding // not recorded 1373566_at AI103026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103026 /DB_XREF=gi:4134134 /DB_XREF=EST212315 /CLONE=REMBW26 /FEA=EST /CNT=10 /TID=Rn.12253.1 /TIER=Stack /STK=8 /UG=Rn.12253 /UG_TITLE=ESTs, Moderately similar to T12543 hypothetical protein DKFZp434M154.1 (H.sapiens) AI103026 similar to interferon regulatory factor 2 binding protein 2 LOC679357 679357 XM_002725440 1373567_at BF418590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418590 /DB_XREF=gi:11406579 /DB_XREF=UI-R-BJ2-bqh-f-11-0-UI.s1 /CLONE=UI-R-BJ2-bqh-f-11-0-UI /FEA=EST /CNT=10 /TID=Rn.64476.1 /TIER=Stack /STK=8 /UG=Rn.64476 /UG_TITLE=ESTs, Weakly similar to TRANSDUCIN-LIKE ENHANCER PROTEIN 4 (R.norvegicus) BF418590 similar to Tle6 protein RGD1561530 299637 XR_009018 /// XR_086287 1373568_at AI172222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172222 /DB_XREF=gi:4134725 /DB_XREF=EST218220 /CLONE=RMUBW45 /FEA=EST /CNT=10 /TID=Rn.19047.1 /TIER=Stack /STK=8 /UG=Rn.19047 /UG_TITLE=ESTs AI172222 1373569_at AI013005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013005 /DB_XREF=gi:4133725 /DB_XREF=EST207456 /CLONE=RSPBA96 /FEA=EST /CNT=10 /TID=Rn.20126.1 /TIER=Stack /STK=8 /UG=Rn.20126 /UG_TITLE=ESTs AI013005 1373570_at AI411240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411240 /DB_XREF=gi:4254744 /DB_XREF=EST239534 /CLONE=RKIER14 /FEA=EST /CNT=10 /TID=Rn.8518.1 /TIER=Stack /STK=8 /UG=Rn.8518 /UG_TITLE=ESTs AI411240 aminopeptidase-like 1 Npepl1 311671 NM_001107806 0006508 // proteolysis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0008235 // metalloexopeptidase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from electronic annotation 1373571_at AI170276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170276 /DB_XREF=gi:3710316 /DB_XREF=EST216202 /CLONE=RLUCG39 /FEA=EST /CNT=10 /TID=Rn.37848.1 /TIER=Stack /STK=8 /UG=Rn.37848 /UG_TITLE=ESTs AI170276 reticulon 3 Rtn3 140945 NM_001009953 /// NM_080909 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1373572_at BF282247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282247 /DB_XREF=gi:11213317 /DB_XREF=EST446838 /CLONE=RGIDI25 /FEA=EST /CNT=10 /TID=Rn.17330.1 /TIER=Stack /STK=8 /UG=Rn.17330 /UG_TITLE=ESTs, Moderately similar to T17273 hypothetical protein DKFZp434C0935.1 (H.sapiens) BF282247 GTP binding protein 5 Gtpbp5 296462 NM_001013924 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1373573_at H31907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31907 /DB_XREF=gi:977324 /DB_XREF=EST106452 /CLONE=RPCBC73 /FEA=EST /CNT=10 /TID=Rn.16873.2 /TIER=Stack /STK=8 /UG=Rn.16873 /LL=117039 /UG_GENE=Gps1 /UG_TITLE=G protein pathway suppressor 1 H31907 PP3111 protein Pp3111 246185 NM_172018 0008033 // tRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0017150 // tRNA dihydrouridine synthase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1373574_at BI285607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285607 /DB_XREF=gi:14939433 /DB_XREF=UI-R-CW0-bvv-d-08-0-UI.s2 /CLONE=UI-R-CW0-bvv-d-08-0-UI /FEA=EST /CNT=10 /TID=Rn.6578.1 /TIER=Stack /STK=8 /UG=Rn.6578 /UG_TITLE=ESTs BI285607 canopy 4 homolog (zebrafish) Cnpy4 363886 NM_001108852 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded 1373575_at BE111722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111722 /DB_XREF=gi:8503827 /DB_XREF=UI-R-BJ1-avx-a-09-0-UI.s1 /CLONE=UI-R-BJ1-avx-a-09-0-UI /FEA=EST /CNT=10 /TID=Rn.9277.1 /TIER=Stack /STK=8 /UG=Rn.9277 /UG_TITLE=ESTs, Highly similar to FCEG RAT HIGH AFFINITY IMMUNOGLOBULIN EPSILON RECEPTOR GAMMA-SUBUNIT PRECURSOR (R.norvegicus) BE111722 Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide Fcer1g 25441 NM_001131001 0001798 // positive regulation of type IIa hypersensitivity // inferred from electronic annotation /// 0001798 // positive regulation of type IIa hypersensitivity // not recorded /// 0001805 // positive regulation of type III hypersensitivity // inferred from electronic annotation /// 0001805 // positive regulation of type III hypersensitivity // not recorded /// 0001812 // positive regulation of type I hypersensitivity // inferred from electronic annotation /// 0001812 // positive regulation of type I hypersensitivity // not recorded /// 0002431 // Fc receptor mediated stimulatory signaling pathway // inferred from electronic annotation /// 0002431 // Fc receptor mediated stimulatory signaling pathway // not recorded /// 0006911 // phagocytosis, engulfment // inferred from electronic annotation /// 0006911 // phagocytosis, engulfment // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0016064 // immunoglobulin mediated immune response // inferred from electronic annotation /// 0016064 // immunoglobulin mediated immune response // not recorded /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // not recorded /// 0030593 // neutrophil chemotaxis // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // not recorded /// 0032733 // positive regulation of interleukin-10 production // inferred from electronic annotation /// 0032733 // positive regulation of interleukin-10 production // not recorded /// 0032755 // positive regulation of interleukin-6 production // inferred from electronic annotation /// 0032755 // positive regulation of interleukin-6 production // not recorded /// 0032760 // positive regulation of tumor necrosis factor production // inferred from electronic annotation /// 0032760 // positive regulation of tumor necrosis factor production // not recorded /// 0032765 // positive regulation of mast cell cytokine production // inferred from electronic annotation /// 0032765 // positive regulation of mast cell cytokine production // not recorded /// 0033026 // negative regulation of mast cell apoptosis // inferred from electronic annotation /// 0033026 // negative regulation of mast cell apoptosis // not recorded /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // inferred from electronic annotation /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // not recorded /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0042742 // defense response to bacterium // not recorded /// 0043306 // positive regulation of mast cell degranulation // inferred from electronic annotation /// 0043306 // positive regulation of mast cell degranulation // not recorded /// 0045576 // mast cell activation // inferred from electronic annotation /// 0045576 // mast cell activation // not recorded /// 0050766 // positive regulation of phagocytosis // inferred from electronic annotation /// 0050766 // positive regulation of phagocytosis // not recorded /// 0050776 // regulation of immune response // not recorded /// 0050776 // regulation of immune response // inferred from electronic annotation /// 0050778 // positive regulation of immune response // inferred from electronic annotation /// 0050778 // positive regulation of immune response // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032998 // Fc-epsilon receptor I complex // inferred from electronic annotation /// 0032998 // Fc-epsilon receptor I complex // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019767 // IgE receptor activity // inferred from electronic annotation /// 0019767 // IgE receptor activity // not recorded /// 0019863 // IgE binding // not recorded /// 0019863 // IgE binding // inferred from electronic annotation /// 0019864 // IgG binding // inferred from electronic annotation /// 0019864 // IgG binding // not recorded 1373576_at BE107337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107337 /DB_XREF=gi:8499442 /DB_XREF=UI-R-BS1-ays-f-01-0-UI.s1 /CLONE=UI-R-BS1-ays-f-01-0-UI /FEA=EST /CNT=16 /TID=Rn.7856.1 /TIER=Stack /STK=8 /UG=Rn.7856 /UG_TITLE=ESTs, Weakly similar to T14740 hypothetical protein DKFZp564G1964.1 (H.sapiens) BE107337 1373577_at BE116566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116566 /DB_XREF=gi:8508671 /DB_XREF=UI-R-BS1-ayj-g-02-0-UI.s1 /CLONE=UI-R-BS1-ayj-g-02-0-UI /FEA=EST /CNT=15 /TID=Rn.12046.1 /TIER=Stack /STK=8 /UG=Rn.12046 /UG_TITLE=ESTs BE116566 1373578_at BM386413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386413 /DB_XREF=gi:18186466 /DB_XREF=UI-R-CN1-cjf-l-20-0-UI.s1 /CLONE=UI-R-CN1-cjf-l-20-0-UI /FEA=EST /CNT=14 /TID=Rn.16973.1 /TIER=Stack /STK=8 /UG=Rn.16973 /UG_TITLE=ESTs, Highly similar to NFM RAT NEUROFILAMENT TRIPLET M PROTEIN (R.norvegicus) BM386413 tripartite motif-containing 2 Trim2 361970 NM_001108552 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373579_at AA945758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945758 /DB_XREF=gi:3105674 /DB_XREF=EST201257 /CLONE=RLUAS87 /FEA=EST /CNT=13 /TID=Rn.7908.1 /TIER=Stack /STK=8 /UG=Rn.7908 /UG_TITLE=ESTs AA945758 retinoic acid receptor, alpha Rara 24705 NM_031528 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001889 // liver development // inferred from expression pattern /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006950 // response to stress // inferred from expression pattern /// 0007165 // signal transduction // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007565 // female pregnancy // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008584 // male gonad development // inferred from direct assay /// 0010628 // positive regulation of gene expression // not recorded /// 0010629 // negative regulation of gene expression // not recorded /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // inferred from mutant phenotype /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from direct assay /// 0021766 // hippocampus development // inferred from expression pattern /// 0030520 // estrogen receptor signaling pathway // not recorded /// 0030850 // prostate gland development // inferred from expression pattern /// 0030852 // regulation of granulocyte differentiation // inferred from electronic annotation /// 0030852 // regulation of granulocyte differentiation // not recorded /// 0030853 // negative regulation of granulocyte differentiation // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032355 // response to estradiol stimulus // not recorded /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032526 // response to retinoic acid // not recorded /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0032689 // negative regulation of interferon-gamma production // not recorded /// 0032720 // negative regulation of tumor necrosis factor production // not recorded /// 0032736 // positive regulation of interleukin-13 production // not recorded /// 0032753 // positive regulation of interleukin-4 production // not recorded /// 0032754 // positive regulation of interleukin-5 production // not recorded /// 0033189 // response to vitamin A // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043277 // apoptotic cell clearance // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from direct assay /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045630 // positive regulation of T-helper 2 cell differentiation // not recorded /// 0045666 // positive regulation of neuron differentiation // inferred from direct assay /// 0045767 // regulation of anti-apoptosis // inferred from direct assay /// 0045787 // positive regulation of cell cycle // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045947 // negative regulation of translational initiation // inferred from electronic annotation /// 0045947 // negative regulation of translational initiation // not recorded /// 0048167 // regulation of synaptic plasticity // inferred from direct assay /// 0048384 // retinoic acid receptor signaling pathway // not recorded /// 0051099 // positive regulation of binding // not recorded /// 0051897 // positive regulation of protein kinase B signaling cascade // inferred from mutant phenotype /// 0055012 // ventricular cardiac muscle cell differentiation // inferred from electronic annotation /// 0055012 // ventricular cardiac muscle cell differentiation // not recorded /// 0060591 // chondroblast differentiation // inferred from electronic annotation /// 0060591 // chondroblast differentiation // not recorded /// 0061037 // negative regulation of cartilage development // inferred from electronic annotation /// 0061037 // negative regulation of cartilage development // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from mutant phenotype /// 0071222 // cellular response to lipopolysaccharide // not recorded /// 0071300 // cellular response to retinoic acid // not recorded /// 0071391 // cellular response to estrogen stimulus // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030425 // dendrite // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000900 // translation repressor activity, nucleic acid binding // inferred from direct assay /// 0001972 // retinoic acid binding // not recorded /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0003708 // retinoic acid receptor activity // not recorded /// 0003708 // retinoic acid receptor activity // traceable author statement /// 0003708 // retinoic acid receptor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // not recorded /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0019899 // enzyme binding // not recorded /// 0019904 // protein domain specific binding // not recorded /// 0030528 // transcription regulator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0031490 // chromatin DNA binding // not recorded /// 0035014 // phosphoinositide 3-kinase regulator activity // inferred from mutant phenotype /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0048027 // mRNA 5'-UTR binding // inferred from direct assay 1373580_at BI289991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289991 /DB_XREF=gi:14948134 /DB_XREF=UI-R-DK0-cfq-e-11-0-UI.s1 /CLONE=UI-R-DK0-cfq-e-11-0-UI /FEA=EST /CNT=12 /TID=Rn.20373.1 /TIER=Stack /STK=8 /UG=Rn.20373 /UG_TITLE=ESTs BI289991 1373581_at BG380767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380767 /DB_XREF=gi:13305239 /DB_XREF=UI-R-CT0-bub-b-10-0-UI.s1 /CLONE=UI-R-CT0-bub-b-10-0-UI /FEA=EST /CNT=12 /TID=Rn.17471.1 /TIER=Stack /STK=8 /UG=Rn.17471 /UG_TITLE=ESTs BG380767 similar to KIAA0672 gene product RGD1305664 303222 XM_002724619 /// XM_002727747 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1373582_at BF418394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418394 /DB_XREF=gi:11406383 /DB_XREF=UI-R-BJ2-box-h-05-0-UI.s1 /CLONE=UI-R-BJ2-box-h-05-0-UI /FEA=EST /CNT=12 /TID=Rn.9962.2 /TIER=Stack /STK=8 /UG=Rn.9962 /LL=25570 /UG_GENE=Trhr /UG_TITLE=Thyrotropin releasing hormone receptor BF418394 1373583_at BF396317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396317 /DB_XREF=gi:11381289 /DB_XREF=UI-R-BS2-bdw-g-05-0-UI.s1 /CLONE=UI-R-BS2-bdw-g-05-0-UI /FEA=EST /CNT=12 /TID=Rn.9556.1 /TIER=Stack /STK=8 /UG=Rn.9556 /UG_TITLE=ESTs BF396317 1373584_at BE113205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113205 /DB_XREF=gi:8505310 /DB_XREF=UI-R-BJ1-awc-g-05-0-UI.s1 /CLONE=UI-R-BJ1-awc-g-05-0-UI /FEA=EST /CNT=11 /TID=Rn.11815.1 /TIER=Stack /STK=8 /UG=Rn.11815 /UG_TITLE=ESTs BE113205 similar to hypothetical protein A430031N04 RGD1559643 498100 NM_001109056 1373585_at BE116774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116774 /DB_XREF=gi:8508879 /DB_XREF=UI-R-BS1-ayf-b-05-0-UI.s1 /CLONE=UI-R-BS1-ayf-b-05-0-UI /FEA=EST /CNT=11 /TID=Rn.19779.1 /TIER=Stack /STK=8 /UG=Rn.19779 /UG_TITLE=ESTs BE116774 COX16 cytochrome c oxidase assembly homolog Cox16 100302447 NM_001163153 0031966 // mitochondrial membrane // inferred from electronic annotation 1373586_at AI411113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411113 /DB_XREF=gi:4254617 /DB_XREF=EST239407 /CLONE=RKIET64 /FEA=EST /CNT=11 /TID=Rn.15612.1 /TIER=Stack /STK=8 /UG=Rn.15612 /UG_TITLE=ESTs AI411113 1373587_at AI412496 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412496 /DB_XREF=gi:4256000 /DB_XREF=EST240795 /CLONE=RBRDT18 /FEA=EST /CNT=11 /TID=Rn.8781.1 /TIER=Stack /STK=8 /UG=Rn.8781 /UG_TITLE=ESTs AI412496 guanine nucleotide binding protein, alpha transducing 1 Gnat1 363143 NM_001108780 0001580 // detection of chemical stimulus involved in sensory perception of bitter taste // inferred from direct assay /// 0006184 // GTP catabolic process // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007601 // visual perception // not recorded /// 0007602 // phototransduction // not recorded /// 0007603 // phototransduction, visible light // not recorded /// 0008283 // cell proliferation // not recorded /// 0009586 // rhodopsin mediated phototransduction // inferred from mutant phenotype /// 0009642 // response to light intensity // inferred from direct assay /// 0042462 // eye photoreceptor cell development // not recorded /// 0050908 // detection of light stimulus involved in visual perception // not recorded /// 0050917 // sensory perception of umami taste // not recorded /// 0051343 // positive regulation of cyclic-nucleotide phosphodiesterase activity // inferred from direct assay 0001750 // photoreceptor outer segment // inferred from direct assay /// 0001750 // photoreceptor outer segment // not recorded /// 0001917 // photoreceptor inner segment // inferred from direct assay /// 0001917 // photoreceptor inner segment // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from direct assay /// 0032391 // photoreceptor connecting cilium // not recorded /// 0043025 // neuronal cell body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit binding // not recorded 1373588_at H33457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33457 /DB_XREF=gi:978874 /DB_XREF=EST109475 /CLONE=RPNAS04 /FEA=EST /CNT=11 /TID=Rn.1260.1 /TIER=Stack /STK=8 /UG=Rn.1260 /UG_TITLE=ESTs H33457 FERM domain containing 8 Frmd8 309172 NM_001008348 0005856 // cytoskeleton // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1373589_at BM385209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385209 /DB_XREF=gi:18185262 /DB_XREF=UI-R-CN1-cjs-j-10-0-UI.s2 /CLONE=UI-R-CN1-cjs-j-10-0-UI /FEA=EST /CNT=10 /TID=Rn.8338.1 /TIER=Stack /STK=8 /UG=Rn.8338 /UG_TITLE=ESTs, Weakly similar to T00375 hypothetical protein KIAA0647 (H.sapiens) BM385209 myotubularin related protein 3 Mtmr3 305482 NM_001012038 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373590_at BI295949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295949 /DB_XREF=gi:14959906 /DB_XREF=UI-R-DK0-cfc-f-06-0-UI.s1 /CLONE=UI-R-DK0-cfc-f-06-0-UI /FEA=EST /CNT=10 /TID=Rn.16958.1 /TIER=Stack /STK=8 /UG=Rn.16958 /UG_TITLE=ESTs, Highly similar to JC5221 stomatin - mouse (M.musculus) BI295949 stomatin Stom 296655 NM_001011965 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded 0005856 // cytoskeleton // inferred from electronic annotation /// 0005856 // cytoskeleton // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1373591_at BG375435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375435 /DB_XREF=gi:13299907 /DB_XREF=UI-R-CV1-btb-d-02-0-UI.s1 /CLONE=UI-R-CV1-btb-d-02-0-UI /FEA=EST /CNT=10 /TID=Rn.9597.1 /TIER=Stack /STK=8 /UG=Rn.9597 /UG_TITLE=ESTs, Highly similar to S71627 Rac1-interacting protein por1 (H.sapiens) BG375435 ADP-ribosylation factor interacting protein 2 Arfip2 293344 NM_001004222 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded 0001726 // ruffle // inferred from electronic annotation /// 0001726 // ruffle // not recorded /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0030742 // GTP-dependent protein binding // not recorded 1373592_at AI407094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407094 /DB_XREF=gi:4250598 /DB_XREF=EST235382 /CLONE=ROVDT30 /FEA=EST /CNT=10 /TID=Rn.2559.1 /TIER=Stack /STK=8 /UG=Rn.2559 /UG_TITLE=ESTs, Weakly similar to plasminogen activator inhibitor 2 type A (Rattus norvegicus) (R.norvegicus) AI407094 serine (or cysteine) peptidase inhibitor, clade B, member 9 Serpinb9 361241 NM_001007732 0001913 // T cell mediated cytotoxicity // inferred from electronic annotation /// 0001913 // T cell mediated cytotoxicity // not recorded /// 0002438 // acute inflammatory response to antigenic stimulus // inferred from electronic annotation /// 0002438 // acute inflammatory response to antigenic stimulus // not recorded /// 0002448 // mast cell mediated immunity // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006955 // immune response // not recorded /// 0010951 // negative regulation of endopeptidase activity // not recorded /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0042742 // defense response to bacterium // not recorded /// 0070233 // negative regulation of T cell apoptosis // inferred from electronic annotation /// 0070233 // negative regulation of T cell apoptosis // not recorded /// 0071391 // cellular response to estrogen stimulus // not recorded 0005615 // extracellular space // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0002020 // protease binding // not recorded /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043027 // caspase inhibitor activity // not recorded 1373593_at BM390974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390974 /DB_XREF=gi:18191027 /DB_XREF=UI-R-CN1-cjm-e-23-0-UI.s1 /CLONE=UI-R-CN1-cjm-e-23-0-UI /FEA=EST /CNT=10 /TID=Rn.13139.1 /TIER=Stack /STK=8 /UG=Rn.13139 /UG_TITLE=ESTs, Highly similar to RNH1_MOUSE Ribonuclease H1 (RNase H1) (M.musculus) BM390974 ribonuclease H1 Rnaseh1 298933 NM_001013097 0006264 // mitochondrial DNA replication // inferred from electronic annotation /// 0006264 // mitochondrial DNA replication // not recorded /// 0008152 // metabolic process // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004523 // ribonuclease H activity // inferred from electronic annotation /// 0004523 // ribonuclease H activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1373594_at BE097279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097279 /DB_XREF=gi:8488210 /DB_XREF=UI-R-BO1-apv-d-12-0-UI.s1 /CLONE=UI-R-BO1-apv-d-12-0-UI /FEA=EST /CNT=10 /TID=Rn.22692.1 /TIER=Stack /STK=8 /UG=Rn.22692 /UG_TITLE=ESTs BE097279 DnaJ (Hsp40) homolog, subfamily C, member 27 Dnajc27 298859 NM_206845 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation 1373595_at BM385463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385463 /DB_XREF=gi:18185516 /DB_XREF=UI-R-CN1-clv-n-22-0-UI.s1 /CLONE=UI-R-CN1-clv-n-22-0-UI /FEA=EST /CNT=10 /TID=Rn.15201.1 /TIER=Stack /STK=8 /UG=Rn.15201 /UG_TITLE=ESTs BM385463 transmembrane protein 43 Tmem43 362401 NM_001007745 0005634 // nucleus // inferred from electronic annotation /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1373596_at AI230766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230766 /DB_XREF=gi:3814653 /DB_XREF=EST227461 /CLONE=REMDA96 /FEA=EST /CNT=10 /TID=Rn.23137.1 /TIER=Stack /STK=8 /UG=Rn.23137 /UG_TITLE=ESTs AI230766 similar to hypothetical protein FLJ31737 RGD1310423 361112 NM_001029920 1373597_at AI102689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102689 /DB_XREF=gi:3704722 /DB_XREF=EST211978 /CLONE=REMBR10 /FEA=EST /CNT=10 /TID=Rn.16344.1 /TIER=Stack /STK=8 /UG=Rn.16344 /UG_TITLE=ESTs, Highly similar to POP7_HUMAN Ribonuclease P protein subunit p20 (RNaseP protein p20) (hPOP7) (H.sapiens) AI102689 processing of precursor 7, ribonuclease P/MRP subunit (S. cerevisiae) Pop7 288564 NM_001105918 0008033 // tRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0004526 // ribonuclease P activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373598_at BE116948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116948 /DB_XREF=gi:8509018 /DB_XREF=UI-R-BS1-azg-f-11-0-UI.s1 /CLONE=UI-R-BS1-azg-f-11-0-UI /FEA=EST /CNT=10 /TID=Rn.26845.1 /TIER=Stack /STK=8 /UG=Rn.26845 /UG_TITLE=ESTs BE116948 1373599_at AI599525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599525 /DB_XREF=gi:4608573 /DB_XREF=EST251228 /CLONE=REMEO66 /FEA=EST /CNT=10 /TID=Rn.13322.1 /TIER=Stack /STK=8 /UG=Rn.13322 /UG_TITLE=ESTs AI599525 G protein-coupled receptor 124 LOC100363275 100363275 XR_086049 /// XR_086656 1373600_at AI412518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412518 /DB_XREF=gi:4256022 /DB_XREF=EST240817 /CLONE=RBRDW62 /FEA=EST /CNT=10 /TID=Rn.14826.1 /TIER=Stack /STK=8 /UG=Rn.14826 /UG_TITLE=ESTs AI412518 glycosyltransferase 8 domain containing 3 Glt8d3 300173 NM_001100887 0016266 // O-glycan processing // not recorded /// 0016266 // O-glycan processing // inferred from sequence or structural similarity /// 0016266 // O-glycan processing // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016763 // transferase activity, transferring pentosyl groups // inferred from electronic annotation /// 0035252 // UDP-xylosyltransferase activity // not recorded /// 0035252 // UDP-xylosyltransferase activity // inferred from sequence or structural similarity /// 0035252 // UDP-xylosyltransferase activity // inferred from electronic annotation 1373601_at BI295167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295167 /DB_XREF=gi:14958341 /DB_XREF=UI-R-DK0-ceg-e-11-0-UI.s1 /CLONE=UI-R-DK0-ceg-e-11-0-UI /FEA=EST /CNT=10 /TID=Rn.34651.1 /TIER=Stack /STK=8 /UG=Rn.34651 /UG_TITLE=ESTs BI295167 1373602_at BE113234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113234 /DB_XREF=gi:8505339 /DB_XREF=UI-R-BJ1-awd-b-02-0-UI.s1 /CLONE=UI-R-BJ1-awd-b-02-0-UI /FEA=EST /CNT=10 /TID=Rn.19553.1 /TIER=Stack /STK=8 /UG=Rn.19553 /UG_TITLE=ESTs BE113234 1373603_at BG673166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG673166 /DB_XREF=gi:13895265 /DB_XREF=DRNBOG01 /CLONE=DRNBOG01 /FEA=EST /CNT=10 /TID=Rn.6491.1 /TIER=Stack /STK=8 /UG=Rn.6491 /UG_TITLE=ESTs, Weakly similar to T45061 hypothetical protein c316G12.2 (H.sapiens) BG673166 similar to RIKEN cDNA 0610007P22 RGD1565744 360494 NM_001108268 1373604_at BI288870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288870 /DB_XREF=gi:14945870 /DB_XREF=UI-R-DK0-cdf-h-03-0-UI.s1 /CLONE=UI-R-DK0-cdf-h-03-0-UI /FEA=EST /CNT=10 /TID=Rn.40201.1 /TIER=Stack /STK=8 /UG=Rn.40201 /UG_TITLE=ESTs BI288870 Hypothetical protein LOC680199 LOC680199 680199 XM_001056100 1373605_at AI176540 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176540 /DB_XREF=gi:3727178 /DB_XREF=EST220127 /CLONE=ROVBT32 /FEA=EST /CNT=10 /TID=Rn.3090.1 /TIER=Stack /STK=8 /UG=Rn.3090 /UG_TITLE=ESTs AI176540 trafficking protein, kinesin binding 1 Trak1 316085 NM_001134565 0008333 // endosome to lysosome transport // not recorded 0005739 // mitochondrion // not recorded /// 0005769 // early endosome // not recorded 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0050811 // GABA receptor binding // not recorded 1373606_at AI411964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411964 /DB_XREF=gi:4255468 /DB_XREF=EST240258 /CLONE=RKIER75 /FEA=EST /CNT=10 /TID=Rn.32162.1 /TIER=Stack /STK=8 /UG=Rn.32162 /UG_TITLE=ESTs AI411964 zinc finger, AN1 type domain 2B Zfand2b 363253 NM_001025745 0005783 // endoplasmic reticulum // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373607_at BF418530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418530 /DB_XREF=gi:11406519 /DB_XREF=UI-R-BJ2-bqh-a-04-0-UI.s1 /CLONE=UI-R-BJ2-bqh-a-04-0-UI /FEA=EST /CNT=10 /TID=Rn.33467.1 /TIER=Stack /STK=8 /UG=Rn.33467 /UG_TITLE=ESTs BF418530 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 St3gal3 64445 NM_031697 0006486 // protein glycosylation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0008118 // N-acetyllactosaminide alpha-2,3-sialyltransferase activity // traceable author statement /// 0008118 // N-acetyllactosaminide alpha-2,3-sialyltransferase activity // inferred from electronic annotation /// 0008373 // sialyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1373608_at AI639277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639277 /DB_XREF=gi:4700311 /DB_XREF=rx00638s /CLONE=rx00638 /FEA=EST /CNT=10 /TID=Rn.36163.1 /TIER=Stack /STK=8 /UG=Rn.36163 /UG_TITLE=ESTs AI639277 1373609_at AI232274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232274 /DB_XREF=gi:4135737 /DB_XREF=EST228962 /CLONE=RKIBZ58 /FEA=EST /CNT=10 /TID=Rn.8603.1 /TIER=Stack /STK=8 /UG=Rn.8603 /UG_TITLE=ESTs, Weakly similar to T29933 hypothetical protein F29B9.10 - Caenorhabditis elegans (C.elegans) AI232274 mitochondrial ribosomal protein S21 Mrps21 689432 NM_001126094 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1373610_at AI232694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232694 /DB_XREF=gi:3816574 /DB_XREF=EST229382 /CLONE=RKICF25 /FEA=EST /CNT=9 /TID=Rn.24238.1 /TIER=Stack /STK=8 /UG=Rn.24238 /UG_TITLE=ESTs, Weakly similar to Y079_HUMAN HYPOTHETICAL PROTEIN KIAA0079 (H.sapiens) AI232694 SEC24 family, member D (S. cerevisiae) Sec24d 310843 NM_001107723 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded 0030127 // COPII vesicle coat // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1373611_at BI279744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279744 /DB_XREF=gi:14927852 /DB_XREF=UI-R-CU0s-cbq-c-04-0-UI.s1 /CLONE=UI-R-CU0s-cbq-c-04-0-UI /FEA=EST /CNT=9 /TID=Rn.7097.1 /TIER=Stack /STK=8 /UG=Rn.7097 /UG_TITLE=ESTs BI279744 interleukin 17 receptor A Il17ra 312679 NM_001107883 0004872 // receptor activity // inferred from electronic annotation 1373612_at BM391810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391810 /DB_XREF=gi:18191863 /DB_XREF=UI-R-DO1-cmk-o-13-0-UI.s1 /CLONE=UI-R-DO1-cmk-o-13-0-UI /FEA=EST /CNT=9 /TID=Rn.15317.1 /TIER=Stack /STK=8 /UG=Rn.15317 /UG_TITLE=ESTs BM391810 1373613_at AI408827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408827 /DB_XREF=gi:4252331 /DB_XREF=EST237118 /CLONE=RKIDP12 /FEA=EST /CNT=9 /TID=Rn.32236.1 /TIER=Stack /STK=8 /UG=Rn.32236 /UG_TITLE=ESTs AI408827 solute carrier family 48 (heme transporter), member 1 Slc48a1 300191 NM_001127456 0006810 // transport // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1373614_at BI300548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300548 /DB_XREF=gi:14976828 /DB_XREF=UI-R-CV2-cim-c-07-0-UI.s1 /CLONE=UI-R-CV2-cim-c-07-0-UI /FEA=EST /CNT=9 /TID=Rn.45116.1 /TIER=Stack /STK=8 /UG=Rn.45116 /UG_TITLE=ESTs BI300548 choline acetyltransferase Chat 290567 NM_001170593 /// XM_001061520 /// XM_224626 0001547 // antral ovarian follicle growth // inferred from expression pattern /// 0001666 // response to hypoxia // inferred from expression pattern /// 0007268 // synaptic transmission // not recorded /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0007517 // muscle organ development // not recorded /// 0007529 // establishment of synaptic specificity at neuromuscular junction // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0007613 // memory // inferred from mutant phenotype /// 0007622 // rhythmic behavior // not recorded /// 0007628 // adult walking behavior // not recorded /// 0008152 // metabolic process // not recorded /// 0008292 // acetylcholine biosynthetic process // inferred from direct assay /// 0016358 // dendrite development // not recorded /// 0030182 // neuron differentiation // not recorded /// 0042136 // neurotransmitter biosynthetic process // traceable author statement /// 0042493 // response to drug // inferred from expression pattern /// 0043179 // rhythmic excitation // not recorded /// 0045471 // response to ethanol // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded /// 0019717 // synaptosome // inferred from direct assay /// 0043025 // neuronal cell body // not recorded 0004102 // choline O-acetyltransferase activity // inferred from direct assay /// 0004102 // choline O-acetyltransferase activity // not recorded /// 0004102 // choline O-acetyltransferase activity // traceable author statement /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0033265 // choline binding // inferred from direct assay 1373615_at BM391538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391538 /DB_XREF=gi:18191591 /DB_XREF=UI-R-DY0-ckr-m-02-0-UI.s1 /CLONE=UI-R-DY0-ckr-m-02-0-UI /FEA=EST /CNT=9 /TID=Rn.17567.1 /TIER=Stack /STK=8 /UG=Rn.17567 /UG_TITLE=ESTs, Highly similar to FRZB_MOUSE Frizzled-related protein precursor (Frzb-1) (Frezzled) (Fritz) (Secreted frizzled-related sequence protein 3) (sFRP-3) (M.musculus) BM391538 frizzled-related protein Frzb 295691 NM_001100527 0007275 // multicellular organismal development // inferred from electronic annotation /// 0010721 // negative regulation of cell development // not recorded /// 0010721 // negative regulation of cell development // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0060029 // convergent extension involved in organogenesis // not recorded /// 0060029 // convergent extension involved in organogenesis // inferred from electronic annotation /// 0061037 // negative regulation of cartilage development // not recorded /// 0061037 // negative regulation of cartilage development // inferred from electronic annotation /// 0070367 // negative regulation of hepatocyte differentiation // not recorded /// 0070367 // negative regulation of hepatocyte differentiation // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded /// 0090103 // cochlea morphogenesis // not recorded /// 0090103 // cochlea morphogenesis // inferred from electronic annotation 0005615 // extracellular space // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017147 // Wnt-protein binding // inferred from electronic annotation 1373616_at BM386276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386276 /DB_XREF=gi:18186329 /DB_XREF=UI-R-CN1-cjf-b-05-0-UI.s1 /CLONE=UI-R-CN1-cjf-b-05-0-UI /FEA=EST /CNT=9 /TID=Rn.15667.1 /TIER=Stack /STK=8 /UG=Rn.15667 /UG_TITLE=ESTs BM386276 STE20-like kinase (yeast) Slk 54308 NM_019349 0006289 // nucleotide-excision repair // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction 1373617_at AA818807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818807 /DB_XREF=gi:4227483 /DB_XREF=UI-R-A0-ar-c-03-0-UI.s1 /CLONE=UI-R-A0-ar-c-03-0-UI /FEA=EST /CNT=9 /TID=Rn.16415.1 /TIER=Stack /STK=8 /UG=Rn.16415 /UG_TITLE=ESTs AA818807 epithelial membrane protein 2 Emp2 360468 NM_001007721 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1373618_at BE113210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113210 /DB_XREF=gi:8505315 /DB_XREF=UI-R-BJ1-awc-h-01-0-UI.s1 /CLONE=UI-R-BJ1-awc-h-01-0-UI /FEA=EST /CNT=9 /TID=Rn.16361.1 /TIER=Stack /STK=8 /UG=Rn.16361 /UG_TITLE=ESTs BE113210 cAMP responsive element binding protein-like 2 Crebl2 362453 NM_001015027 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1373619_at AA894306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894306 /DB_XREF=gi:4132377 /DB_XREF=EST198109 /CLONE=RSPAW39 /FEA=EST /CNT=9 /TID=Rn.30154.1 /TIER=Stack /STK=8 /UG=Rn.30154 /UG_TITLE=ESTs AA894306 ankyrin repeat domain 10 Ankrd10 361183 XM_001075954 /// XM_341466 1373620_at AI102038 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102038 /DB_XREF=gi:3706873 /DB_XREF=EST211327 /CLONE=RBRBY22 /FEA=EST /CNT=9 /TID=Rn.9599.1 /TIER=Stack /STK=8 /UG=Rn.9599 /UG_TITLE=ESTs AI102038 nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) Nus1 294400 NM_001164157 0016765 // transferase activity, transferring alkyl or aryl (other than methyl) groups // inferred from electronic annotation 1373621_at BI285949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285949 /DB_XREF=gi:14940110 /DB_XREF=UI-R-CX0s-ccp-f-11-0-UI.s1 /CLONE=UI-R-CX0s-ccp-f-11-0-UI /FEA=EST /CNT=9 /TID=Rn.8703.1 /TIER=Stack /STK=8 /UG=Rn.8703 /UG_TITLE=ESTs, Moderately similar to guanosine monophosphate reductase (Rattus norvegicus) (R.norvegicus) BI285949 guanosine monophosphate reductase 2 Gmpr2 192357 NM_001013036 0008152 // metabolic process // inferred from electronic annotation /// 0009117 // nucleotide metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003920 // GMP reductase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1373622_at AI410886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410886 /DB_XREF=gi:4254390 /DB_XREF=EST239179 /CLONE=RHECY59 /FEA=EST /CNT=9 /TID=Rn.16811.1 /TIER=Stack /STK=8 /UG=Rn.16811 /UG_TITLE=ESTs AI410886 TBC1 domain family, member 22B Tbc1d22b 502414 NM_001025059 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1373623_at BI278809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278809 /DB_XREF=gi:14926020 /DB_XREF=UI-R-CX0-bwx-b-08-0-UI.s1 /CLONE=UI-R-CX0-bwx-b-08-0-UI /FEA=EST /CNT=9 /TID=Rn.27347.1 /TIER=Stack /STK=8 /UG=Rn.27347 /UG_TITLE=ESTs BI278809 inositol 1,4,5-trisphosphate 3-kinase C Itpkc 308451 NM_178094 0016310 // phosphorylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008440 // inositol trisphosphate 3-kinase activity // inferred from electronic annotation /// 0008440 // inositol trisphosphate 3-kinase activity // not recorded /// 0016301 // kinase activity // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1373624_at AA945713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945713 /DB_XREF=gi:3105629 /DB_XREF=EST201212 /CLONE=RLUAS27 /FEA=EST /CNT=9 /TID=Rn.7899.1 /TIER=Stack /STK=8 /UG=Rn.7899 /UG_TITLE=ESTs AA945713 1373625_at AI412012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412012 /DB_XREF=gi:4255516 /DB_XREF=EST240306 /CLONE=RKIEJ52 /FEA=EST /CNT=9 /TID=Rn.1595.1 /TIER=Stack /STK=8 /UG=Rn.1595 /UG_TITLE=ESTs, Highly similar to GLYC_MOUSE SERINE HYDROXYMETHYLTRANSFERASE, CYTOSOLIC (SERINE METHYLASE) (GLYCINE HYDROXYMETHYLTRANSFERASE) (SHMT) (M.musculus) AI412012 serine hydroxymethyltransferase 1 (soluble) Shmt1 287379 NM_001047842 0006544 // glycine metabolic process // inferred from direct assay /// 0006544 // glycine metabolic process // traceable author statement /// 0006544 // glycine metabolic process // inferred from electronic annotation /// 0006545 // glycine biosynthetic process // inferred from direct assay /// 0006563 // L-serine metabolic process // traceable author statement /// 0006563 // L-serine metabolic process // inferred from electronic annotation /// 0006565 // L-serine catabolic process // inferred from electronic annotation /// 0006565 // L-serine catabolic process // not recorded /// 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0009113 // purine base biosynthetic process // inferred from electronic annotation /// 0009113 // purine base biosynthetic process // not recorded /// 0019264 // glycine biosynthetic process from serine // inferred from direct assay /// 0046655 // folic acid metabolic process // inferred from electronic annotation /// 0046655 // folic acid metabolic process // not recorded /// 0051262 // protein tetramerization // not recorded /// 0051262 // protein tetramerization // inferred from electronic annotation /// 0051289 // protein homotetramerization // inferred from direct assay 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // traceable author statement /// 0005829 // cytosol // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004372 // glycine hydroxymethyltransferase activity // inferred from direct assay /// 0004372 // glycine hydroxymethyltransferase activity // not recorded /// 0004372 // glycine hydroxymethyltransferase activity // traceable author statement /// 0004372 // glycine hydroxymethyltransferase activity // inferred from electronic annotation /// 0008732 // L-allo-threonine aldolase activity // inferred from direct assay /// 0016597 // amino acid binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from direct assay /// 0030170 // pyridoxal phosphate binding // not recorded /// 0030170 // pyridoxal phosphate binding // traceable author statement /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1373626_at AI102507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102507 /DB_XREF=gi:3707271 /DB_XREF=EST211796 /CLONE=REMBO51 /FEA=EST /CNT=9 /TID=Rn.15465.1 /TIER=Stack /STK=8 /UG=Rn.15465 /UG_TITLE=ESTs AI102507 1373627_at BI289104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289104 /DB_XREF=gi:14946330 /DB_XREF=UI-R-DK0-cfe-e-09-0-UI.s1 /CLONE=UI-R-DK0-cfe-e-09-0-UI /FEA=EST /CNT=9 /TID=Rn.37642.1 /TIER=Stack /STK=8 /UG=Rn.37642 /UG_TITLE=ESTs BI289104 Inositol polyphosphate-5-phosphatase K Inpp5k 287533 NM_001013859 0001701 // in utero embryonic development // not recorded /// 0032868 // response to insulin stimulus // not recorded /// 0033137 // negative regulation of peptidyl-serine phosphorylation // not recorded /// 0042593 // glucose homeostasis // not recorded 0001726 // ruffle // not recorded /// 0005624 // membrane fraction // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005829 // cytosol // not recorded /// 0043005 // neuron projection // not recorded 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0004437 // inositol or phosphatidylinositol phosphatase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016312 // inositol bisphosphate phosphatase activity // not recorded /// 0046030 // inositol trisphosphate phosphatase activity // not recorded 1373628_at AA818342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818342 /DB_XREF=gi:4198169 /DB_XREF=UI-R-A0-ad-e-10-0-UI.s1 /CLONE=UI-R-A0-ad-e-10-0-UI /FEA=EST /CNT=9 /TID=Rn.1026.1 /TIER=Stack /STK=8 /UG=Rn.1026 /UG_TITLE=ESTs AA818342 1373629_at BE108272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108272 /DB_XREF=gi:8500377 /DB_XREF=UI-R-BS1-ayx-d-02-0-UI.s1 /CLONE=UI-R-BS1-ayx-d-02-0-UI /FEA=EST /CNT=9 /TID=Rn.8066.1 /TIER=Stack /STK=8 /UG=Rn.8066 /UG_TITLE=ESTs BE108272 solute carrier family 7 (cationic amino acid transporter, y+ system), member 6 Slc7a6 307811 NM_001107424 0006810 // transport // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation 1373630_at BG378832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378832 /DB_XREF=gi:13303304 /DB_XREF=UI-R-CV1-bvt-d-06-0-UI.s1 /CLONE=UI-R-CV1-bvt-d-06-0-UI /FEA=EST /CNT=9 /TID=Rn.23894.1 /TIER=Stack /STK=8 /UG=Rn.23894 /UG_TITLE=ESTs BG378832 intermediate filament family orphan 1 Iffo1 362437 NM_001108647 1373631_at BF284067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284067 /DB_XREF=gi:11215137 /DB_XREF=EST448658 /CLONE=RGIEK54 /FEA=EST /CNT=9 /TID=Rn.18036.1 /TIER=Stack /STK=8 /UG=Rn.18036 /UG_TITLE=ESTs BF284067 Rap1 GTPase-activating protein Rap1gap 313644 XM_001070178 /// XM_233609 0007165 // signal transduction // inferred from electronic annotation /// 0032318 // regulation of Ras GTPase activity // not recorded /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017016 // Ras GTPase binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1373632_at AI172041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172041 /DB_XREF=gi:3712081 /DB_XREF=EST218036 /CLONE=RMUBU21 /FEA=EST /CNT=9 /TID=Rn.8139.1 /TIER=Stack /STK=8 /UG=Rn.8139 /UG_TITLE=ESTs, Moderately similar to AD04_HUMAN ADRENAL GLAND PROTEIN AD-004 (H.sapiens) AI172041 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor Taf9 373541 NM_001012463 /// NM_001037310 /// NM_184048 0006350 // transcription // inferred from electronic annotation /// 0006352 // transcription initiation // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0030307 // positive regulation of cell growth // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // not recorded /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0043966 // histone H3 acetylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0060760 // positive regulation of response to cytokine stimulus // inferred from electronic annotation /// 0060760 // positive regulation of response to cytokine stimulus // not recorded /// 0070555 // response to interleukin-1 // inferred from electronic annotation /// 0070555 // response to interleukin-1 // not recorded 0000125 // PCAF complex // inferred from electronic annotation /// 0000125 // PCAF complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from sequence or structural similarity /// 0005669 // transcription factor TFIID complex // inferred from electronic annotation /// 0005669 // transcription factor TFIID complex // not recorded /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0015030 // Cajal body // not recorded /// 0015030 // Cajal body // inferred from electronic annotation /// 0015030 // Cajal body // inferred from sequence or structural similarity /// 0030914 // STAGA complex // inferred from electronic annotation /// 0030914 // STAGA complex // not recorded /// 0033276 // transcription factor TFTC complex // inferred from electronic annotation /// 0033276 // transcription factor TFTC complex // not recorded /// 0070761 // pre-snoRNP complex // inferred from electronic annotation /// 0070761 // pre-snoRNP complex // not recorded /// 0071339 // MLL1 complex // not recorded /// 0071339 // MLL1 complex // inferred from sequence or structural similarity /// 0071339 // MLL1 complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0002039 // p53 binding // inferred from electronic annotation /// 0002039 // p53 binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0004017 // adenylate kinase activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0033613 // transcription activator binding // inferred from electronic annotation /// 0033613 // transcription activator binding // not recorded /// 0070742 // C2H2 zinc finger domain binding // inferred from electronic annotation /// 0070742 // C2H2 zinc finger domain binding // not recorded 1373633_at BF399791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399791 /DB_XREF=gi:11384801 /DB_XREF=UI-R-CA0-bhy-f-10-0-UI.s2 /CLONE=UI-R-CA0-bhy-f-10-0-UI /FEA=EST /CNT=9 /TID=Rn.27327.1 /TIER=Stack /STK=8 /UG=Rn.27327 /UG_TITLE=ESTs BF399791 1373634_at AI177753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177753 /DB_XREF=gi:3728391 /DB_XREF=EST221396 /CLONE=RPLCF68 /FEA=EST /CNT=9 /TID=Rn.22433.1 /TIER=Stack /STK=8 /UG=Rn.22433 /UG_TITLE=ESTs AI177753 1373635_at BF393090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393090 /DB_XREF=gi:11377950 /DB_XREF=UI-R-CA0-bgu-d-07-0-UI.s1 /CLONE=UI-R-CA0-bgu-d-07-0-UI /FEA=EST /CNT=9 /TID=Rn.23662.1 /TIER=Stack /STK=8 /UG=Rn.23662 /UG_TITLE=ESTs BF393090 Myb-related transcription factor, partner of profilin Mypop 499090 NM_001109139 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1373636_at AI406342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406342 /DB_XREF=gi:4249846 /DB_XREF=EST234628 /CLONE=RBRDM40 /FEA=EST /CNT=9 /TID=Rn.44057.1 /TIER=Stack /STK=8 /UG=Rn.44057 /UG_TITLE=ESTs AI406342 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 Spock1 306759 XM_001067546 /// XM_225160 0007165 // signal transduction // inferred from electronic annotation 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1373637_at BG372823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372823 /DB_XREF=gi:13269360 /DB_XREF=UI-R-CV1-bsa-c-02-0-UI.s1 /CLONE=UI-R-CV1-bsa-c-02-0-UI /FEA=EST /CNT=9 /TID=Rn.23588.1 /TIER=Stack /STK=8 /UG=Rn.23588 /UG_TITLE=ESTs BG372823 1373638_at BG380827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380827 /DB_XREF=gi:13305299 /DB_XREF=UI-R-CT0-bub-h-04-0-UI.s1 /CLONE=UI-R-CT0-bub-h-04-0-UI /FEA=EST /CNT=9 /TID=Rn.19275.1 /TIER=Stack /STK=8 /UG=Rn.19275 /UG_TITLE=ESTs BG380827 1373639_at BE115570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115570 /DB_XREF=gi:8507675 /DB_XREF=UI-R-BJ1-avw-d-11-0-UI.s1 /CLONE=UI-R-BJ1-avw-d-11-0-UI /FEA=EST /CNT=9 /TID=Rn.24956.1 /TIER=Stack /STK=8 /UG=Rn.24956 /UG_TITLE=ESTs BE115570 similar to RIKEN cDNA 2410022L05 RGD1565675 290925 NM_001169121 0043985 // histone H4-R3 methylation // not recorded 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded /// 0042393 // histone binding // not recorded 1373640_at AW525211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525211 /DB_XREF=gi:7167596 /DB_XREF=UI-R-BJ0p-aip-b-02-0-UI.s1 /CLONE=UI-R-BJ0p-aip-b-02-0-UI /FEA=EST /CNT=9 /TID=Rn.19586.1 /TIER=Stack /STK=8 /UG=Rn.19586 /UG_TITLE=ESTs, Highly similar to PROC_HUMAN PYRROLINE-5-CARBOXYLATE REDUCTASE (H.sapiens) AW525211 pyrroline-5-carboxylate reductase family, member 2 Pycr2 364064 NM_001012208 0006561 // proline biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004735 // pyrroline-5-carboxylate reductase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1373641_at BI301187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301187 /DB_XREF=gi:14977467 /DB_XREF=UI-R-DK0-cdx-d-03-0-UI.s2 /CLONE=UI-R-DK0-cdx-d-03-0-UI /FEA=EST /CNT=9 /TID=Rn.17848.1 /TIER=Stack /STK=8 /UG=Rn.17848 /UG_TITLE=ESTs BI301187 1373642_at AI145380 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145380 /DB_XREF=gi:3667173 /DB_XREF=UI-R-BT0-qe-c-08-0-UI.s1 /CLONE=UI-R-BT0-qe-c-08-0-UI /FEA=EST /CNT=9 /TID=Rn.28451.1 /TIER=Stack /STK=8 /UG=Rn.28451 /UG_TITLE=ESTs AI145380 progestin and adipoQ receptor family member VI Paqr6 681021 NM_001191077 /// XM_001059976 /// XM_002725990 0016021 // integral to membrane // inferred from electronic annotation 1373643_at AI177028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177028 /DB_XREF=gi:3727666 /DB_XREF=EST220635 /CLONE=ROVBZ95 /FEA=EST /CNT=9 /TID=Rn.12848.1 /TIER=Stack /STK=8 /UG=Rn.12848 /UG_TITLE=ESTs AI177028 1373644_at AW253720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253720 /DB_XREF=gi:6597311 /DB_XREF=UI-R-BJ0-aes-e-08-0-UI.s1 /CLONE=UI-R-BJ0-aes-e-08-0-UI /FEA=EST /CNT=9 /TID=Rn.24805.1 /TIER=Stack /STK=8 /UG=Rn.24805 /UG_TITLE=ESTs AW253720 1373645_at BM386246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386246 /DB_XREF=gi:18186299 /DB_XREF=UI-R-CN1-cjf-k-10-0-UI.s1 /CLONE=UI-R-CN1-cjf-k-10-0-UI /FEA=EST /CNT=9 /TID=Rn.17605.1 /TIER=Stack /STK=8 /UG=Rn.17605 /UG_TITLE=ESTs BM386246 1373646_at BM384841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384841 /DB_XREF=gi:18184894 /DB_XREF=UI-R-DY0-ckl-m-22-0-UI.s1 /CLONE=UI-R-DY0-ckl-m-22-0-UI /FEA=EST /CNT=9 /TID=Rn.24234.1 /TIER=Stack /STK=8 /UG=Rn.24234 /UG_TITLE=ESTs BM384841 RAB15, member RAS oncogene family Rab15 299156 NM_198749 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation 1373647_at BM392399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392399 /DB_XREF=gi:18192452 /DB_XREF=UI-R-EB1-clf-i-04-0-UI.s1 /CLONE=UI-R-EB1-clf-i-04-0-UI /FEA=EST /CNT=9 /TID=Rn.11619.1 /TIER=Stack /STK=8 /UG=Rn.11619 /UG_TITLE=ESTs, Weakly similar to YB9M_YEAST 45.8 KD PROTEIN IN SHM1-MRPL37 INTERGENIC REGION (S.cerevisiae) BM392399 family with sequence similarity 134, member B /// zinc finger protein 622 Fam134b /// Znf622 294846 /// 619558 NM_001009652 /// NM_001034912 0019233 // sensory perception of pain // not recorded /// 0019233 // sensory perception of pain // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005801 // cis-Golgi network // not recorded /// 0005801 // cis-Golgi network // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373648_at AI102627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102627 /DB_XREF=gi:3707348 /DB_XREF=EST211916 /CLONE=REMBQ22 /FEA=EST /CNT=9 /TID=Rn.28176.1 /TIER=Stack /STK=8 /UG=Rn.28176 /UG_TITLE=ESTs, Highly similar to T42372 probable guanylate kinase (M.musculus) AI102627 similar to Protein C6orf142 homolog LOC681849 681849 XM_001058694 /// XM_002729912 1373649_at AI453889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI453889 /DB_XREF=gi:4289882 /DB_XREF=UI-R-BT0-pu-a-04-0-UI.s1 /CLONE=UI-R-BT0-pu-a-04-0-UI /FEA=EST /CNT=9 /TID=Rn.36639.1 /TIER=Stack /STK=8 /UG=Rn.36639 /UG_TITLE=ESTs, Moderately similar to COXX_HUMAN PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL PRECURSOR (H.sapiens) AI453889 similar to COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase /// similar to COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase LOC687381 /// LOC691853 687381 /// 691853 XM_001077717 /// XM_001079869 0048034 // heme O biosynthetic process // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0004659 // prenyltransferase activity // inferred from electronic annotation /// 0008495 // protoheme IX farnesyltransferase activity // inferred from electronic annotation 1373650_at AI172078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172078 /DB_XREF=gi:3712118 /DB_XREF=EST218073 /CLONE=RMUBU64 /FEA=EST /CNT=9 /TID=Rn.16352.1 /TIER=Stack /STK=8 /UG=Rn.16352 /UG_TITLE=ESTs AI172078 cytidine monophosphate N-acetylneuraminic acid synthetase Cmas 312826 NM_001009419 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0008781 // N-acylneuraminate cytidylyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1373651_at BE103440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103440 /DB_XREF=gi:8495539 /DB_XREF=UI-R-BX0-arc-b-03-0-UI.s1 /CLONE=UI-R-BX0-arc-b-03-0-UI /FEA=EST /CNT=9 /TID=Rn.45576.1 /TIER=Stack /STK=8 /UG=Rn.45576 /UG_TITLE=ESTs BE103440 1373652_at BG374986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374986 /DB_XREF=gi:13299458 /DB_XREF=UI-R-CV1-bsw-g-08-0-UI.s1 /CLONE=UI-R-CV1-bsw-g-08-0-UI /FEA=EST /CNT=9 /TID=Rn.23989.1 /TIER=Stack /STK=8 /UG=Rn.23989 /UG_TITLE=ESTs BG374986 consortin, connexin sorting protein Cnst 498297 XM_001060344 /// XM_573525 0042998 // positive regulation of Golgi to plasma membrane protein transport // not recorded 0005802 // trans-Golgi network // not recorded /// 0005886 // plasma membrane // not recorded /// 0030133 // transport vesicle // not recorded /// 0043234 // protein complex // not recorded 0005515 // protein binding // not recorded /// 0071253 // connexin binding // not recorded 1373653_at BF550883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550883 /DB_XREF=gi:11660613 /DB_XREF=UI-R-C1-jz-a-07-0-UI.r1 /CLONE=UI-R-C1-jz-a-07-0-UI /FEA=EST /CNT=9 /TID=Rn.16216.1 /TIER=Stack /STK=8 /UG=Rn.16216 /UG_TITLE=ESTs BF550883 mitochondrial poly(A) polymerase Mtpap 307050 NM_001107359 0071044 // histone mRNA catabolic process // not recorded 0005739 // mitochondrion // not recorded 1373654_at BM389254 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389254 /DB_XREF=gi:18189307 /DB_XREF=UI-R-DZ0-cko-o-04-0-UI.s1 /CLONE=UI-R-DZ0-cko-o-04-0-UI /FEA=EST /CNT=9 /TID=Rn.19975.1 /TIER=Stack /STK=8 /UG=Rn.19975 /UG_TITLE=ESTs BM389254 annexin A8 Anxa8 306283 NM_001031654 0007596 // blood coagulation // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation 1373655_at BG371863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371863 /DB_XREF=gi:13268400 /DB_XREF=UI-R-CV0-brj-c-04-0-UI.s1 /CLONE=UI-R-CV0-brj-c-04-0-UI /FEA=EST /CNT=9 /TID=Rn.32677.1 /TIER=Stack /STK=8 /UG=Rn.32677 /UG_TITLE=ESTs BG371863 similar to RIKEN cDNA 1500002O20 RGD1309888 365215 NM_001014243 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // not recorded /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from sequence or structural similarity /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373656_at AI713313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI713313 /DB_XREF=gi:5017113 /DB_XREF=UI-R-AB1-ys-g-06-0-UI.s2 /CLONE=UI-R-AB1-ys-g-06-0-UI /FEA=EST /CNT=9 /TID=Rn.41381.1 /TIER=Stack /STK=8 /UG=Rn.41381 /UG_TITLE=ESTs AI713313 protein phosphatase 1, regulatory subunit 3D Ppp1r3d 689995 NM_001109564 0005979 // regulation of glycogen biosynthetic process // inferred from direct assay /// 0005981 // regulation of glycogen catabolic process // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0042587 // glycogen granule // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0019899 // enzyme binding // inferred from mutant phenotype 1373657_at BF417391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417391 /DB_XREF=gi:11405380 /DB_XREF=UI-R-CN0-bld-f-04-0-UI.s1 /CLONE=UI-R-CN0-bld-f-04-0-UI /FEA=EST /CNT=9 /TID=Rn.15570.1 /TIER=Stack /STK=8 /UG=Rn.15570 /UG_TITLE=ESTs BF417391 solute carrier family 31 (copper transporters), member 2 Slc31a2 298091 NM_001033693 0006825 // copper ion transport // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0005375 // copper ion transmembrane transporter activity // inferred from electronic annotation 1373658_at AI409259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409259 /DB_XREF=gi:4252763 /DB_XREF=EST237551 /CLONE=ROVEM36 /FEA=EST /CNT=9 /TID=Rn.19950.1 /TIER=Stack /STK=8 /UG=Rn.19950 /UG_TITLE=ESTs AI409259 Rac GTPase-activating protein 1 Racgap1 315298 NM_001108112 0000910 // cytokinesis // inferred from electronic annotation /// 0000910 // cytokinesis // not recorded /// 0000915 // cytokinesis, actomyosin contractile ring assembly // inferred from electronic annotation /// 0000915 // cytokinesis, actomyosin contractile ring assembly // not recorded /// 0007108 // cytokinesis, initiation of separation // inferred from electronic annotation /// 0007108 // cytokinesis, initiation of separation // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007405 // neuroblast proliferation // inferred from electronic annotation /// 0007405 // neuroblast proliferation // not recorded /// 0008272 // sulfate transport // inferred from electronic annotation /// 0008272 // sulfate transport // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0030496 // midbody // inferred from electronic annotation /// 0030496 // midbody // not recorded 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0043014 // alpha-tubulin binding // inferred from electronic annotation /// 0043014 // alpha-tubulin binding // not recorded /// 0043015 // gamma-tubulin binding // inferred from electronic annotation /// 0043015 // gamma-tubulin binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // not recorded 1373659_at AI639350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639350 /DB_XREF=gi:4700384 /DB_XREF=rx05176s /CLONE=rx05176 /FEA=EST /CNT=9 /TID=Rn.65569.1 /TIER=Stack /STK=8 /UG=Rn.65569 /UG_TITLE=ESTs AI639350 hypothetical protein LOC689926 LOC689926 689926 NM_001163002 1373660_at BI280384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280384 /DB_XREF=gi:14929115 /DB_XREF=UI-R-CS0s-cbh-e-03-0-UI.s1 /CLONE=UI-R-CS0s-cbh-e-03-0-UI /FEA=EST /CNT=9 /TID=Rn.41449.1 /TIER=Stack /STK=8 /UG=Rn.41449 /UG_TITLE=ESTs, Moderately similar to AF32_HUMAN AFG3-like protein 2 (Paraplegin-like protein) (H.sapiens) BI280384 AFG3(ATPase family gene 3)-like 1 (S. cerevisiae) Afg3l1 361436 NM_001108456 0006508 // proteolysis // inferred from electronic annotation /// 0030163 // protein catabolic process // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1373661_a_at AA945737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945737 /DB_XREF=gi:4132591 /DB_XREF=EST201236 /CLONE=RLUAS64 /FEA=EST /CNT=9 /TID=Rn.44431.3 /TIER=Stack /STK=8 /UG=Rn.44431 /LL=60628 /UG_GENE=Cxcr4 /UG_TITLE=CXC chemokine receptor AA945737 chemokine (C-X-C motif) receptor 4 Cxcr4 60628 NM_022205 0001569 // patterning of blood vessels // not recorded /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0001667 // ameboidal cell migration // not recorded /// 0001667 // ameboidal cell migration // inferred from electronic annotation /// 0001764 // neuron migration // inferred from direct assay /// 0001764 // neuron migration // inferred from mutant phenotype /// 0001764 // neuron migration // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0002064 // epithelial cell development // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007281 // germ cell development // not recorded /// 0007281 // germ cell development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0008038 // neuron recognition // inferred from expression pattern /// 0008045 // motor axon guidance // not recorded /// 0008045 // motor axon guidance // inferred from electronic annotation /// 0008354 // germ cell migration // not recorded /// 0008354 // germ cell migration // inferred from electronic annotation /// 0016477 // cell migration // inferred from mutant phenotype /// 0019059 // initiation of viral infection // not recorded /// 0022029 // telencephalon cell migration // inferred from mutant phenotype /// 0030334 // regulation of cell migration // not recorded /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0042098 // T cell proliferation // not recorded /// 0042098 // T cell proliferation // inferred from electronic annotation /// 0043067 // regulation of programmed cell death // inferred from mutant phenotype /// 0050920 // regulation of chemotaxis // inferred from mutant phenotype /// 0050920 // regulation of chemotaxis // not recorded /// 0051924 // regulation of calcium ion transport // inferred from mutant phenotype /// 0060048 // cardiac muscle contraction // inferred from mutant phenotype 0005768 // endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0030426 // growth cone // not recorded /// 0030426 // growth cone // inferred from electronic annotation /// 0031252 // cell leading edge // not recorded /// 0031410 // cytoplasmic vesicle // not recorded 0003779 // actin binding // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016493 // C-C chemokine receptor activity // traceable author statement /// 0016493 // C-C chemokine receptor activity // inferred from electronic annotation /// 0016494 // C-X-C chemokine receptor activity // traceable author statement /// 0016494 // C-X-C chemokine receptor activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0032027 // myosin light chain binding // not recorded /// 0043130 // ubiquitin binding // not recorded 1373662_at AI178830 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178830 /DB_XREF=gi:3729468 /DB_XREF=EST222512 /CLONE=RSPBP82 /FEA=EST /CNT=9 /TID=Rn.13187.1 /TIER=Stack /STK=8 /UG=Rn.13187 /UG_TITLE=ESTs, Weakly similar to torsinB (H.sapiens) AI178830 torsin family 2, member A Tor2a 362112 NM_001007744 0006412 // translation // inferred from electronic annotation /// 0051085 // chaperone mediated protein folding requiring cofactor // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004045 // aminoacyl-tRNA hydrolase activity // inferred from electronic annotation /// 0005179 // hormone activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1373663_at AI102482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102482 /DB_XREF=gi:3704665 /DB_XREF=EST211771 /CLONE=REMBO14 /FEA=EST /CNT=9 /TID=Rn.12825.1 /TIER=Stack /STK=8 /UG=Rn.12825 /UG_TITLE=ESTs AI102482 dermokine Dmkn 361548 NM_001173357 /// XM_001079275 /// XM_341835 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 1373664_at AI228670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228670 /DB_XREF=gi:3812557 /DB_XREF=EST225365 /CLONE=RBRCX87 /FEA=EST /CNT=9 /TID=Rn.3171.1 /TIER=Stack /STK=8 /UG=Rn.3171 /UG_TITLE=ESTs, Highly similar to PIGC_HUMAN PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS, CLASS C PROTEIN (PIG-C) (H.sapiens) AI228670 phosphatidylinositol glycan anchor biosynthesis, class C Pigc 364032 NM_001012207 0006506 // GPI anchor biosynthetic process // inferred from electronic annotation /// 0016254 // preassembly of GPI anchor in ER membrane // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0017176 // phosphatidylinositol N-acetylglucosaminyltransferase activity // inferred from electronic annotation 1373665_at AI598689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598689 /DB_XREF=gi:4607737 /DB_XREF=EST250392 /CLONE=REMDT48 /FEA=EST /CNT=9 /TID=Rn.11557.1 /TIER=Stack /STK=8 /UG=Rn.11557 /UG_TITLE=ESTs AI598689 similar to novel protein RGD1563106 303238 NM_001107010 0000723 // telomere maintenance // not recorded 0000784 // nuclear chromosome, telomeric region // not recorded /// 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1373666_at AI102560 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102560 /DB_XREF=gi:3707304 /DB_XREF=EST211849 /CLONE=REMBP25 /FEA=EST /CNT=9 /TID=Rn.22381.1 /TIER=Stack /STK=8 /UG=Rn.22381 /UG_TITLE=ESTs AI102560 Rap guanine nucleotide exchange factor (GEF) 5 Rapgef5 362799 NM_001047915 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0017034 // Rap guanyl-nucleotide exchange factor activity // not recorded /// 0030742 // GTP-dependent protein binding // not recorded 1373667_at BF400674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400674 /DB_XREF=gi:11388649 /DB_XREF=UI-R-CA0-bhe-b-06-0-UI.s1 /CLONE=UI-R-CA0-bhe-b-06-0-UI /FEA=EST /CNT=9 /TID=Rn.7283.1 /TIER=Stack /STK=8 /UG=Rn.7283 /UG_TITLE=ESTs, Highly similar to S66270 kynurenine--oxoglutarate transaminase (R.norvegicus) BF400674 cysteine conjugate-beta lyase, cytoplasmic Ccbl1 311844 NM_001013164 0009058 // biosynthetic process // inferred from electronic annotation /// 0070189 // kynurenine metabolic process // not recorded /// 0070189 // kynurenine metabolic process // inferred from sequence or structural similarity /// 0070189 // kynurenine metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016212 // kynurenine-oxoglutarate transaminase activity // not recorded /// 0016212 // kynurenine-oxoglutarate transaminase activity // inferred from sequence or structural similarity /// 0016212 // kynurenine-oxoglutarate transaminase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016847 // 1-aminocyclopropane-1-carboxylate synthase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0047316 // glutamine-phenylpyruvate transaminase activity // inferred from electronic annotation /// 0047804 // cysteine-S-conjugate beta-lyase activity // inferred from electronic annotation 1373668_at BG373075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373075 /DB_XREF=gi:13269612 /DB_XREF=UI-R-CV1-bsf-c-01-0-UI.s1 /CLONE=UI-R-CV1-bsf-c-01-0-UI /FEA=EST /CNT=9 /TID=Rn.6227.1 /TIER=Stack /STK=8 /UG=Rn.6227 /UG_TITLE=ESTs, Highly similar to RPB9_HUMAN DNA-DIRECTED RNA POLYMERASE II 14.5 KD POLYPEPTIDE (H.sapiens) BG373075 polymerase (RNA) II (DNA directed) polypeptide I Polr2i 292778 NM_001106244 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0008380 // RNA splicing // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005665 // DNA-directed RNA polymerase II, core complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373669_at BG374650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374650 /DB_XREF=gi:13299127 /DB_XREF=UI-R-CV1-bta-h-04-0-UI.s1 /CLONE=UI-R-CV1-bta-h-04-0-UI /FEA=EST /CNT=9 /TID=Rn.12097.1 /TIER=Stack /STK=8 /UG=Rn.12097 /UG_TITLE=ESTs BG374650 glucosamine-6-phosphate deaminase 2 Gnpda2 289608 NM_001106005 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006044 // N-acetylglucosamine metabolic process // inferred from electronic annotation 0004342 // glucosamine-6-phosphate deaminase activity // inferred from electronic annotation 1373670_at AA799569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799569 /DB_XREF=gi:2862524 /DB_XREF=EST189066 /CLONE=RHEAC65 /FEA=EST /CNT=9 /TID=Rn.24237.1 /TIER=Stack /STK=8 /UG=Rn.24237 /UG_TITLE=ESTs AA799569 Signal transducer and activator of transcription 2 Stat2 288774 NM_001011905 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373671_at AA944790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944790 /DB_XREF=gi:3104706 /DB_XREF=EST200289 /CLONE=REMAP21 /FEA=EST /CNT=9 /TID=Rn.83.1 /TIER=Stack /STK=8 /UG=Rn.83 /UG_TITLE=ESTs AA944790 similar to CG14483-PA LOC688786 688786 NM_001195245 /// XM_001069626 /// XM_002724767 1373672_at BM384419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384419 /DB_XREF=gi:18184472 /DB_XREF=UI-R-CN1-cjn-i-04-0-UI.s1 /CLONE=UI-R-CN1-cjn-i-04-0-UI /FEA=EST /CNT=9 /TID=Rn.2559.2 /TIER=Stack /STK=8 /UG=Rn.2559 /UG_TITLE=ESTs, Weakly similar to plasminogen activator inhibitor 2 type A (Rattus norvegicus) (R.norvegicus) BM384419 1373673_at BF284593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284593 /DB_XREF=gi:11215663 /DB_XREF=EST449184 /CLONE=RGIES62 /FEA=EST /CNT=9 /TID=Rn.28805.1 /TIER=Stack /STK=8 /UG=Rn.28805 /UG_TITLE=ESTs BF284593 1373674_at BI283094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283094 /DB_XREF=gi:14934498 /DB_XREF=UI-R-DB0-byr-h-08-0-UI.s1 /CLONE=UI-R-DB0-byr-h-08-0-UI /FEA=EST /CNT=9 /TID=Rn.25217.1 /TIER=Stack /STK=8 /UG=Rn.25217 /UG_TITLE=ESTs, Weakly similar to MGP1 MOUSE MICROFIBRIL-ASSOCIATED GLYCOPROTEIN PRECURSOR (M.musculus) BI283094 microfibrillar associated protein 5 Mfap5 362429 NM_001108644 0001527 // microfibril // inferred from electronic annotation 1373675_at AW525635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525635 /DB_XREF=gi:7168020 /DB_XREF=UI-R-BJ0p-aiu-a-05-0-UI.s1 /CLONE=UI-R-BJ0p-aiu-a-05-0-UI /FEA=EST /CNT=9 /TID=Rn.17175.1 /TIER=Stack /STK=8 /UG=Rn.17175 /UG_TITLE=ESTs, Moderately similar to AF151891 1 CGI-133 protein (H.sapiens) AW525635 glutaredoxin 2 Glrx2 114022 NM_001013034 0006810 // transport // inferred from electronic annotation /// 0010033 // response to organic substance // not recorded /// 0022900 // electron transport chain // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // not recorded /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation 1373676_at AI712626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712626 /DB_XREF=gi:5016426 /DB_XREF=UI-R-AF1-aas-f-08-0-UI.s1 /CLONE=UI-R-AF1-aas-f-08-0-UI /FEA=EST /CNT=12 /TID=Rn.20033.1 /TIER=Stack /STK=8 /UG=Rn.20033 /UG_TITLE=ESTs AI712626 1373677_at AI598315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598315 /DB_XREF=gi:4607363 /DB_XREF=EST250018 /CLONE=REMDO19 /FEA=EST /CNT=11 /TID=Rn.24426.1 /TIER=Stack /STK=8 /UG=Rn.24426 /UG_TITLE=ESTs AI598315 0030001 // metal ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0046873 // metal ion transmembrane transporter activity // inferred from electronic annotation 1373678_at BE098848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098848 /DB_XREF=gi:8490718 /DB_XREF=UI-R-BJ1-ate-e-10-0-UI.s1 /CLONE=UI-R-BJ1-ate-e-10-0-UI /FEA=EST /CNT=11 /TID=Rn.18305.1 /TIER=Stack /STK=8 /UG=Rn.18305 /UG_TITLE=ESTs BE098848 1373679_at AA946467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946467 /DB_XREF=gi:3106383 /DB_XREF=EST201966 /CLONE=ROVAR47 /FEA=EST /CNT=11 /TID=Rn.35869.1 /TIER=Stack /STK=8 /UG=Rn.35869 /UG_TITLE=ESTs AA946467 1373680_at AA800708 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800708 /DB_XREF=gi:2863663 /DB_XREF=EST190205 /CLONE=RLUAK52 /FEA=EST /CNT=10 /TID=Rn.3886.1 /TIER=Stack /STK=8 /UG=Rn.3886 /UG_TITLE=ESTs AA800708 1373681_at AA799505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799505 /DB_XREF=gi:2862460 /DB_XREF=EST189002 /CLONE=RHEAB83 /FEA=EST /CNT=10 /TID=Rn.6195.1 /TIER=Stack /STK=8 /UG=Rn.6195 /UG_TITLE=ESTs, Moderately similar to 2006245A phosphomannose isomerase (H.sapiens) AA799505 mannose phosphate isomerase (mapped) Mpi 300741 NM_001004081 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0004476 // mannose-6-phosphate isomerase activity // inferred from electronic annotation /// 0004476 // mannose-6-phosphate isomerase activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373682_at BI290764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290764 /DB_XREF=gi:14949644 /DB_XREF=UI-R-DK0-cga-b-04-0-UI.s1 /CLONE=UI-R-DK0-cga-b-04-0-UI /FEA=EST /CNT=10 /TID=Rn.15921.1 /TIER=Stack /STK=8 /UG=Rn.15921 /UG_TITLE=ESTs BI290764 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 Ddx51 304570 NM_001107150 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1373683_at AI230396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230396 /DB_XREF=gi:3814283 /DB_XREF=EST227091 /CLONE=REMCW06 /FEA=EST /CNT=10 /TID=Rn.19361.1 /TIER=Stack /STK=8 /UG=Rn.19361 /UG_TITLE=ESTs, Highly similar to proto-oncogene FYN (R.norvegicus) AI230396 1373684_at AA818643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818643 /DB_XREF=gi:4200454 /DB_XREF=UI-R-A0-az-f-04-0-UI.s1 /CLONE=UI-R-A0-az-f-04-0-UI /FEA=EST /CNT=9 /TID=Rn.1412.1 /TIER=Stack /STK=8 /UG=Rn.1412 /UG_TITLE=ESTs AA818643 kelch-like 31 (Drosophila) Klhl31 315833 NM_001108170 0005515 // protein binding // inferred from electronic annotation 1373685_at BI291430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291430 /DB_XREF=gi:14950960 /DB_XREF=UI-R-CV2-cgq-b-11-0-UI.s1 /CLONE=UI-R-CV2-cgq-b-11-0-UI /FEA=EST /CNT=9 /TID=Rn.21120.1 /TIER=Stack /STK=8 /UG=Rn.21120 /UG_TITLE=ESTs BI291430 ankyrin repeat domain 37 Ankrd37 361149 NM_001108400 0004872 // receptor activity // inferred from electronic annotation 1373686_at AA893495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893495 /DB_XREF=gi:3020374 /DB_XREF=EST197298 /CLONE=RLIAD19 /FEA=EST /CNT=9 /TID=Rn.2374.1 /TIER=Stack /STK=8 /UG=Rn.2374 /UG_TITLE=ESTs, Highly similar to CORTICOSTEROID-BINDING GLOBULIN PRECURSOR (R.norvegicus) AA893495 serine (or cysteine) peptidase inhibitor, clade A, member 6 Serpina6 299270 NM_001009663 0006810 // transport // inferred from electronic annotation /// 0008211 // glucocorticoid metabolic process // inferred from electronic annotation /// 0008211 // glucocorticoid metabolic process // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005496 // steroid binding // inferred from electronic annotation /// 0005496 // steroid binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation 1373687_at BI284968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284968 /DB_XREF=gi:14938144 /DB_XREF=UI-R-DB0-byu-f-08-0-UI.s1 /CLONE=UI-R-DB0-byu-f-08-0-UI /FEA=EST /CNT=9 /TID=Rn.19209.1 /TIER=Stack /STK=8 /UG=Rn.19209 /UG_TITLE=ESTs, Moderately similar to T46252 hypothetical protein DKFZp761D051.1 (H.sapiens) BI284968 small G protein signaling modulator 3 Sgsm3 362963 NM_198787 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// 0032483 // regulation of Rab protein signal transduction // not recorded /// 0032483 // regulation of Rab protein signal transduction // inferred from sequence or structural similarity /// 0032483 // regulation of Rab protein signal transduction // inferred from electronic annotation /// 0032486 // Rap protein signal transduction // not recorded /// 0032486 // Rap protein signal transduction // inferred from sequence or structural similarity /// 0032486 // Rap protein signal transduction // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005921 // gap junction // inferred from electronic annotation /// 0005921 // gap junction // not recorded 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017137 // Rab GTPase binding // not recorded /// 0017137 // Rab GTPase binding // inferred from sequence or structural similarity /// 0017137 // Rab GTPase binding // inferred from electronic annotation 1373688_at AA849532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849532 /DB_XREF=gi:2937072 /DB_XREF=EST192299 /CLONE=RMUAF94 /FEA=EST /CNT=9 /TID=Rn.3988.1 /TIER=Stack /STK=8 /UG=Rn.3988 /UG_TITLE=ESTs AA849532 similar to RIKEN cDNA 2810453I06 LOC498145 498145 NM_001017485 0005634 // nucleus // inferred from electronic annotation 1373689_at BG379711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379711 /DB_XREF=gi:13304183 /DB_XREF=UI-R-CS0-btj-c-09-0-UI.s1 /CLONE=UI-R-CS0-btj-c-09-0-UI /FEA=EST /CNT=9 /TID=Rn.23611.1 /TIER=Stack /STK=8 /UG=Rn.23611 /UG_TITLE=ESTs BG379711 1373690_at BI290473 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290473 /DB_XREF=gi:14949083 /DB_XREF=UI-R-DK0-cfw-f-10-0-UI.s1 /CLONE=UI-R-DK0-cfw-f-10-0-UI /FEA=EST /CNT=9 /TID=Rn.19637.1 /TIER=Stack /STK=8 /UG=Rn.19637 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BI290473 1373691_at BM383052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383052 /DB_XREF=gi:18183105 /DB_XREF=UI-R-DS0-cje-o-07-0-UI.s1 /CLONE=UI-R-DS0-cje-o-07-0-UI /FEA=EST /CNT=9 /TID=Rn.35112.1 /TIER=Stack /STK=8 /UG=Rn.35112 /UG_TITLE=ESTs BM383052 1373692_at BM391907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391907 /DB_XREF=gi:18191960 /DB_XREF=UI-R-DM1-ckc-d-07-0-UI.s2 /CLONE=UI-R-DM1-ckc-d-07-0-UI /FEA=EST /CNT=9 /TID=Rn.35180.1 /TIER=Stack /STK=8 /UG=Rn.35180 /UG_TITLE=ESTs, Weakly similar to A55258 insulin-stimulated phosphoprotein PHAS-I - rat (R.norvegicus) BM391907 eukaryotic translation initiation factor 4E binding protein 3-like LOC100365872 100365872 XM_002725330 0045947 // negative regulation of translational initiation // inferred from electronic annotation 0008190 // eukaryotic initiation factor 4E binding // inferred from electronic annotation 1373693_at BF414143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414143 /DB_XREF=gi:11402132 /DB_XREF=UI-R-BJ2-bom-g-12-0-UI.s1 /CLONE=UI-R-BJ2-bom-g-12-0-UI /FEA=EST /CNT=9 /TID=Rn.3658.1 /TIER=Stack /STK=8 /UG=Rn.3658 /UG_TITLE=ESTs BF414143 G protein-coupled receptor, family C, group 5, member C Gprc5c 287805 NM_001191591 /// XM_001081657 /// XM_001081659 /// XM_002727830 /// XM_213518 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373694_at H33486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33486 /DB_XREF=gi:978903 /DB_XREF=EST109536 /CLONE=RPNAS60 /FEA=EST /CNT=9 /TID=Rn.23316.1 /TIER=Stack /STK=8 /UG=Rn.23316 /UG_TITLE=ESTs, Weakly similar to T2D4_HUMAN TRANSCRIPTION INITIATION FACTOR TFIID 100 KDA SUBUNIT (H.sapiens) H33486 WD repeat containing, antisense to TP53 Wrap53 287432 NM_001007610 0032203 // telomere formation via telomerase // not recorded /// 0032203 // telomere formation via telomerase // inferred from sequence or structural similarity /// 0032203 // telomere formation via telomerase // inferred from electronic annotation /// 0051973 // positive regulation of telomerase activity // not recorded /// 0051973 // positive regulation of telomerase activity // inferred from sequence or structural similarity /// 0051973 // positive regulation of telomerase activity // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005697 // telomerase holoenzyme complex // not recorded /// 0005697 // telomerase holoenzyme complex // inferred from sequence or structural similarity /// 0005697 // telomerase holoenzyme complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0015030 // Cajal body // not recorded /// 0015030 // Cajal body // inferred from sequence or structural similarity /// 0015030 // Cajal body // inferred from electronic annotation 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373695_at AI176675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176675 /DB_XREF=gi:3727313 /DB_XREF=EST220268 /CLONE=ROVBV42 /FEA=EST /CNT=9 /TID=Rn.2704.1 /TIER=Stack /STK=8 /UG=Rn.2704 /UG_TITLE=ESTs AI176675 1373696_at AI171656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171656 /DB_XREF=gi:3711696 /DB_XREF=EST217629 /CLONE=RMUBN90 /FEA=EST /CNT=8 /TID=Rn.7615.1 /TIER=Stack /STK=8 /UG=Rn.7615 /UG_TITLE=ESTs AI171656 1373697_at BG378588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378588 /DB_XREF=gi:13303060 /DB_XREF=UI-R-CV1-bvr-c-05-0-UI.s1 /CLONE=UI-R-CV1-bvr-c-05-0-UI /FEA=EST /CNT=8 /TID=Rn.27586.1 /TIER=Stack /STK=8 /UG=Rn.27586 /UG_TITLE=ESTs, Weakly similar to norvegicus myosin binding protein H (Rattus norvegicus) (R.norvegicus) BG378588 myosin binding protein C, fast-type Mybpc2 292879 NM_001106257 0006936 // muscle contraction // not recorded 1373698_at BI278681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278681 /DB_XREF=gi:14925770 /DB_XREF=UI-R-DB0-bza-e-11-0-UI.s1 /CLONE=UI-R-DB0-bza-e-11-0-UI /FEA=EST /CNT=8 /TID=Rn.54023.1 /TIER=Stack /STK=8 /UG=Rn.54023 /UG_TITLE=ESTs BI278681 S100 calcium-binding protein, ventral prostate S100vp 295176 NM_176076 0006874 // cellular calcium ion homeostasis // inferred from direct assay /// 0033574 // response to testosterone stimulus // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation 1373699_at BM391164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391164 /DB_XREF=gi:18191217 /DB_XREF=UI-R-DY0-ckq-c-15-0-UI.s1 /CLONE=UI-R-DY0-ckq-c-15-0-UI /FEA=EST /CNT=8 /TID=Rn.12818.1 /TIER=Stack /STK=8 /UG=Rn.12818 /UG_TITLE=ESTs BM391164 1373700_at BI291459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291459 /DB_XREF=gi:14951021 /DB_XREF=UI-R-CV2-cgq-e-09-0-UI.s1 /CLONE=UI-R-CV2-cgq-e-09-0-UI /FEA=EST /CNT=8 /TID=Rn.66301.1 /TIER=Stack /STK=8 /UG=Rn.66301 /UG_TITLE=ESTs BI291459 1373701_at BI275605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275605 /DB_XREF=gi:14919680 /DB_XREF=UI-R-CW0-bwk-d-07-0-UI.s1 /CLONE=UI-R-CW0-bwk-d-07-0-UI /FEA=EST /CNT=8 /TID=Rn.3163.1 /TIER=Stack /STK=8 /UG=Rn.3163 /UG_TITLE=ESTs BI275605 1373702_at AI171798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171798 /DB_XREF=gi:4134668 /DB_XREF=EST217780 /CLONE=RMUBQ85 /FEA=EST /CNT=8 /TID=Rn.17236.1 /TIER=Stack /STK=8 /UG=Rn.17236 /UG_TITLE=ESTs AI171798 l(3)mbt-like 2 (Drosophila) L3mbtl2 300320 NM_001033695 0006350 // transcription // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0008270 // zinc ion binding // inferred from electronic annotation /// 0035064 // methylated histone residue binding // not recorded /// 0035064 // methylated histone residue binding // inferred from sequence or structural similarity /// 0035064 // methylated histone residue binding // inferred from electronic annotation /// 0042393 // histone binding // not recorded /// 0042393 // histone binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373703_at BE113247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113247 /DB_XREF=gi:8505352 /DB_XREF=UI-R-BJ1-awd-c-03-0-UI.s1 /CLONE=UI-R-BJ1-awd-c-03-0-UI /FEA=EST /CNT=8 /TID=Rn.13320.1 /TIER=Stack /STK=8 /UG=Rn.13320 /UG_TITLE=ESTs BE113247 1373704_at BI294892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294892 /DB_XREF=gi:14957790 /DB_XREF=UI-R-DK0-ced-d-03-0-UI.s1 /CLONE=UI-R-DK0-ced-d-03-0-UI /FEA=EST /CNT=8 /TID=Rn.9431.1 /TIER=Stack /STK=8 /UG=Rn.9431 /UG_TITLE=ESTs, Highly similar to T00333 hypothetical protein KIAA0560 (H.sapiens) BI294892 aquarius homolog (mouse) Aqr 366163 NM_001100987 1373705_at AI235502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235502 /DB_XREF=gi:3829008 /DB_XREF=EST232064 /CLONE=ROVCS66 /FEA=EST /CNT=8 /TID=Rn.21890.1 /TIER=Stack /STK=8 /UG=Rn.21890 /UG_TITLE=ESTs, Moderately similar to 2115356A p15 protein (H.sapiens) AI235502 mitochondrial ribosomal protein L28 Mrpl28 497876 XM_001061401 /// XM_573060 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1373706_at BI281981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281981 /DB_XREF=gi:14932278 /DB_XREF=UI-R-CU0s-cbv-a-04-0-UI.s1 /CLONE=UI-R-CU0s-cbv-a-04-0-UI /FEA=EST /CNT=8 /TID=Rn.34679.1 /TIER=Stack /STK=8 /UG=Rn.34679 /UG_TITLE=ESTs, Weakly similar to JC4666 lymphocyte specific helicase - mouse (M.musculus) BI281981 Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 Smarcal1 316477 NM_001108222 0006200 // ATP catabolic process // not recorded /// 0006259 // DNA metabolic process // not recorded /// 0006259 // DNA metabolic process // inferred from sequence or structural similarity /// 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003678 // DNA helicase activity // not recorded /// 0003678 // DNA helicase activity // inferred from sequence or structural similarity /// 0003678 // DNA helicase activity // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0008094 // DNA-dependent ATPase activity // inferred from sequence or structural similarity /// 0008094 // DNA-dependent ATPase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation 1373707_at BM382865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM382865 /DB_XREF=gi:18182918 /DB_XREF=UI-R-BT1-bko-g-03-0-UI.s1 /CLONE=UI-R-BT1-bko-g-03-0-UI /FEA=EST /CNT=8 /TID=Rn.23917.1 /TIER=Stack /STK=8 /UG=Rn.23917 /UG_TITLE=ESTs BM382865 1373708_at BG378168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378168 /DB_XREF=gi:13302640 /DB_XREF=UI-R-CV1-bvo-g-08-0-UI.s1 /CLONE=UI-R-CV1-bvo-g-08-0-UI /FEA=EST /CNT=8 /TID=Rn.19605.1 /TIER=Stack /STK=8 /UG=Rn.19605 /UG_TITLE=ESTs BG378168 terminal uridylyl transferase 1, U6 snRNA-specific Tut1 499314 NM_001033901 0071044 // histone mRNA catabolic process // not recorded /// 0071044 // histone mRNA catabolic process // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0050265 // RNA uridylyltransferase activity // inferred from electronic annotation 1373709_at BI281706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281706 /DB_XREF=gi:14931718 /DB_XREF=UI-R-CT0s-cav-e-05-0-UI.s1 /CLONE=UI-R-CT0s-cav-e-05-0-UI /FEA=EST /CNT=8 /TID=Rn.28239.1 /TIER=Stack /STK=8 /UG=Rn.28239 /UG_TITLE=ESTs BI281706 family with sequence similarity 149, member B1 Fam149b1 289900 NM_001013878 1373710_at BI296600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296600 /DB_XREF=gi:14961186 /DB_XREF=UI-R-CV2-cgt-b-04-0-UI.s1 /CLONE=UI-R-CV2-cgt-b-04-0-UI /FEA=EST /CNT=8 /TID=Rn.73202.1 /TIER=Stack /STK=8 /UG=Rn.73202 /UG_TITLE=ESTs BI296600 1373711_at BI296681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296681 /DB_XREF=gi:14961351 /DB_XREF=UI-R-CV2-cgv-b-01-0-UI.s1 /CLONE=UI-R-CV2-cgv-b-01-0-UI /FEA=EST /CNT=8 /TID=Rn.67000.1 /TIER=Stack /STK=8 /UG=Rn.67000 /UG_TITLE=ESTs, Highly similar to origin recognition complex subunit 5 homolog (H.sapiens) BI296681 origin recognition complex, subunit 5-like (yeast) Orc5l 362304 NM_001014186 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded 0000808 // origin recognition complex // inferred from electronic annotation /// 0000808 // origin recognition complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1373712_at BI282710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282710 /DB_XREF=gi:14933750 /DB_XREF=UI-R-CW0s-cce-c-07-0-UI.s1 /CLONE=UI-R-CW0s-cce-c-07-0-UI /FEA=EST /CNT=8 /TID=Rn.12226.1 /TIER=Stack /STK=8 /UG=Rn.12226 /UG_TITLE=ESTs, Moderately similar to I38902 retinoblastoma binding protein RIZ (H.sapiens) BI282710 PR domain containing 2, with ZNF domain Prdm2 313678 NM_001077648 0006350 // transcription // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373713_at BF393948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393948 /DB_XREF=gi:11378853 /DB_XREF=UI-R-CA0-bgx-e-07-0-UI.s1 /CLONE=UI-R-CA0-bgx-e-07-0-UI /FEA=EST /CNT=8 /TID=Rn.46023.1 /TIER=Stack /STK=8 /UG=Rn.46023 /UG_TITLE=ESTs BF393948 1373714_at BF401566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401566 /DB_XREF=gi:11389541 /DB_XREF=UI-R-CA0-bgm-b-04-0-UI.s1 /CLONE=UI-R-CA0-bgm-b-04-0-UI /FEA=EST /CNT=8 /TID=Rn.60163.1 /TIER=Stack /STK=8 /UG=Rn.60163 /UG_TITLE=ESTs BF401566 1373715_at BI274516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274516 /DB_XREF=gi:14885494 /DB_XREF=UI-R-CW0-bwj-g-06-0-UI.s1 /CLONE=UI-R-CW0-bwj-g-06-0-UI /FEA=EST /CNT=8 /TID=Rn.14808.1 /TIER=Stack /STK=8 /UG=Rn.14808 /UG_TITLE=ESTs, Moderately similar to T42659 hypothetical protein DKFZp434K1815.1 (H.sapiens) BI274516 similar to hypothetical protein DKFZp434K1815 LOC304396 304396 NM_001013981 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay 1373716_at BM390404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390404 /DB_XREF=gi:18190457 /DB_XREF=UI-R-CN1-cjq-l-09-0-UI.s1 /CLONE=UI-R-CN1-cjq-l-09-0-UI /FEA=EST /CNT=8 /TID=Rn.15020.1 /TIER=Stack /STK=8 /UG=Rn.15020 /UG_TITLE=ESTs BM390404 armadillo repeat containing 5 Armc5 361653 NM_001009455 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1373717_at BF409265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409265 /DB_XREF=gi:11397240 /DB_XREF=UI-R-CA1-ble-a-06-0-UI.s1 /CLONE=UI-R-CA1-ble-a-06-0-UI /FEA=EST /CNT=8 /TID=Rn.61462.1 /TIER=Stack /STK=8 /UG=Rn.61462 /UG_TITLE=ESTs BF409265 1373718_at BM384071 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384071 /DB_XREF=gi:18184124 /DB_XREF=UI-R-DZ0-cks-k-20-0-UI.s1 /CLONE=UI-R-DZ0-cks-k-20-0-UI /FEA=EST /CNT=8 /TID=Rn.36759.1 /TIER=Stack /STK=8 /UG=Rn.36759 /UG_TITLE=ESTs, Highly similar to TBB1 RAT TUBULIN BETA CHAIN (R.norvegicus) BM384071 tubulin, beta 2a Tubb2a 498736 NM_001109119 0001764 // neuron migration // inferred from electronic annotation /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007067 // mitosis // inferred from mutant phenotype /// 0007411 // axon guidance // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from mutant phenotype /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0032720 // negative regulation of tumor necrosis factor production // inferred from electronic annotation /// 0051225 // spindle assembly // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation /// 0070914 // UV-damage excision repair // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0004980 // melanocyte-stimulating hormone receptor activity // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0042277 // peptide binding // inferred from physical interaction /// 0042288 // MHC class I protein binding // inferred from electronic annotation 1373719_at AA819812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819812 /DB_XREF=gi:4228067 /DB_XREF=UI-R-A0-aq-g-10-0-UI.s1 /CLONE=UI-R-A0-aq-g-10-0-UI /FEA=EST /CNT=8 /TID=Rn.16669.1 /TIER=Stack /STK=8 /UG=Rn.16669 /UG_TITLE=ESTs AA819812 mitogen-activated protein kinase kinase kinase kinase 3 Map4k3 170920 NM_133407 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006950 // response to stress // not recorded /// 0006950 // response to stress // inferred from sequence or structural similarity /// 0007243 // intracellular protein kinase cascade // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1373720_at BG372852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372852 /DB_XREF=gi:13269389 /DB_XREF=UI-R-CV1-bsa-e-08-0-UI.s1 /CLONE=UI-R-CV1-bsa-e-08-0-UI /FEA=EST /CNT=8 /TID=Rn.66963.1 /TIER=Stack /STK=8 /UG=Rn.66963 /UG_TITLE=ESTs BG372852 1373721_at BI291360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291360 /DB_XREF=gi:14950828 /DB_XREF=UI-R-CV2-cgp-b-08-0-UI.s1 /CLONE=UI-R-CV2-cgp-b-08-0-UI /FEA=EST /CNT=8 /TID=Rn.62183.1 /TIER=Stack /STK=8 /UG=Rn.62183 /UG_TITLE=ESTs BI291360 histidyl-tRNA synthetase 2-like Hars2l 307491 NM_001014012 0006412 // translation // inferred from electronic annotation /// 0006427 // histidyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004821 // histidine-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1373722_at BE111697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111697 /DB_XREF=gi:8503802 /DB_XREF=UI-R-BJ1-avv-g-04-0-UI.s1 /CLONE=UI-R-BJ1-avv-g-04-0-UI /FEA=EST /CNT=8 /TID=Rn.22201.2 /TIER=Stack /STK=8 /UG=Rn.22201 /UG_TITLE=ESTs, Highly similar to RB6K MOUSE RABKINESIN-6 (M.musculus) BE111697 kinesin family member 20A Kif20a 361308 NM_001108426 0007018 // microtubule-based movement // inferred from electronic annotation 0005654 // nucleoplasm // not recorded /// 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1373723_at BI278547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278547 /DB_XREF=gi:14925500 /DB_XREF=UI-R-CW0-bxn-a-09-0-UI.s1 /CLONE=UI-R-CW0-bxn-a-09-0-UI /FEA=EST /CNT=8 /TID=Rn.7294.1 /TIER=Stack /STK=8 /UG=Rn.7294 /UG_TITLE=ESTs BI278547 glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 Gpihbp1 300027 NM_001130547 0006869 // lipid transport // not recorded /// 0030301 // cholesterol transport // not recorded /// 0042632 // cholesterol homeostasis // not recorded /// 0050821 // protein stabilization // not recorded /// 0051006 // positive regulation of lipoprotein lipase activity // not recorded /// 0070328 // triglyceride homeostasis // not recorded /// 0071503 // response to heparin // not recorded /// 0090321 // positive regulation of chylomicron remnant clearance // not recorded 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0031362 // anchored to external side of plasma membrane // not recorded /// 0046658 // anchored to plasma membrane // not recorded 0008035 // high-density lipoprotein binding // not recorded /// 0034185 // apolipoprotein binding // not recorded /// 0035473 // lipase binding // not recorded /// 0035478 // chylomicron binding // not recorded 1373724_at BI274589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274589 /DB_XREF=gi:14885634 /DB_XREF=UI-R-CW0-bwl-f-08-0-UI.s1 /CLONE=UI-R-CW0-bwl-f-08-0-UI /FEA=EST /CNT=8 /TID=Rn.16837.1 /TIER=Stack /STK=8 /UG=Rn.16837 /UG_TITLE=ESTs, Highly similar to K2C4 MOUSE KERATIN, TYPE II CYTOSKELETAL 4 (M.musculus) BI274589 keratin 4 Krt4 315323 NM_001008806 0030855 // epithelial cell differentiation // not recorded /// 0030855 // epithelial cell differentiation // inferred from sequence or structural similarity /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // inferred from sequence or structural similarity /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation 0005882 // intermediate filament // inferred from electronic annotation /// 0045095 // keratin filament // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 1373725_at BE117010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117010 /DB_XREF=gi:8509115 /DB_XREF=UI-R-BS1-ayl-g-08-0-UI.s1 /CLONE=UI-R-BS1-ayl-g-08-0-UI /FEA=EST /CNT=8 /TID=Rn.900.1 /TIER=Stack /STK=8 /UG=Rn.900 /UG_TITLE=ESTs BE117010 1373726_at AI072251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072251 /DB_XREF=gi:3398445 /DB_XREF=UI-R-C2-mu-h-04-0-UI.s1 /CLONE=UI-R-C2-mu-h-04-0-UI /FEA=EST /CNT=8 /TID=Rn.7468.1 /TIER=Stack /STK=8 /UG=Rn.7468 /UG_TITLE=ESTs AI072251 1373727_at BI275179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275179 /DB_XREF=gi:14886771 /DB_XREF=UI-R-CX0-bxc-e-03-0-UI.s1 /CLONE=UI-R-CX0-bxc-e-03-0-UI /FEA=EST /CNT=8 /TID=Rn.43451.1 /TIER=Stack /STK=8 /UG=Rn.43451 /UG_TITLE=ESTs BI275179 fin bud initiation factor homolog (zebrafish) Fibin 499856 NM_001025042 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation 1373728_at BE111811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111811 /DB_XREF=gi:8503916 /DB_XREF=UI-R-BJ1-avz-a-10-0-UI.s1 /CLONE=UI-R-BJ1-avz-a-10-0-UI /FEA=EST /CNT=8 /TID=Rn.24486.1 /TIER=Stack /STK=8 /UG=Rn.24486 /UG_TITLE=ESTs BE111811 similar to RIKEN cDNA 1700088E04 RGD1359634 315126 NM_001007708 1373729_at BG376772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376772 /DB_XREF=gi:13301244 /DB_XREF=UI-R-CU0-buv-g-06-0-UI.s1 /CLONE=UI-R-CU0-buv-g-06-0-UI /FEA=EST /CNT=8 /TID=Rn.12551.1 /TIER=Stack /STK=8 /UG=Rn.12551 /UG_TITLE=ESTs BG376772 ATP synthase mitochondrial F1 complex assembly factor 1 Atpaf1 313510 NM_001107959 0006461 // protein complex assembly // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // not recorded 1373730_at BI282077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282077 /DB_XREF=gi:14932464 /DB_XREF=UI-R-CU0s-cbw-c-06-0-UI.s1 /CLONE=UI-R-CU0s-cbw-c-06-0-UI /FEA=EST /CNT=8 /TID=Rn.23554.1 /TIER=Stack /STK=8 /UG=Rn.23554 /UG_TITLE=ESTs BI282077 1373731_at AI409901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409901 /DB_XREF=gi:4253405 /DB_XREF=EST238194 /CLONE=RPLDN04 /FEA=EST /CNT=8 /TID=Rn.9483.1 /TIER=Stack /STK=8 /UG=Rn.9483 /UG_TITLE=ESTs AI409901 1373732_at BM386224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386224 /DB_XREF=gi:18186277 /DB_XREF=UI-R-CN1-cjf-e-12-0-UI.s1 /CLONE=UI-R-CN1-cjf-e-12-0-UI /FEA=EST /CNT=8 /TID=Rn.8329.1 /TIER=Stack /STK=8 /UG=Rn.8329 /UG_TITLE=ESTs, Weakly similar to Prostatic Acid Phosphatase (R.norvegicus) BM386224 acid phosphatase 6, lysophosphatidic Acp6 295305 NM_001031645 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003993 // acid phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373733_at AI227742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227742 /DB_XREF=gi:3811629 /DB_XREF=EST224437 /CLONE=RBRCK89 /FEA=EST /CNT=8 /TID=Rn.13800.1 /TIER=Stack /STK=8 /UG=Rn.13800 /UG_TITLE=ESTs AI227742 BCL2-related ovarian killer Bok 29884 NM_017312 0006915 // apoptosis // inferred from direct assay /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from direct assay 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046983 // protein dimerization activity // inferred from physical interaction /// 0051400 // BH domain binding // inferred from physical interaction 1373734_at AI101171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101171 /DB_XREF=gi:3704594 /DB_XREF=EST210460 /CLONE=RBRBG43 /FEA=EST /CNT=8 /TID=Rn.20527.1 /TIER=Stack /STK=8 /UG=Rn.20527 /UG_TITLE=ESTs AI101171 Solute carrier organic anion transporter family, member 3a1 Slco3a1 140915 NM_177481 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015732 // prostaglandin transport // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1373735_at BG372418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372418 /DB_XREF=gi:13268955 /DB_XREF=UI-R-CV1-bsc-e-04-0-UI.s1 /CLONE=UI-R-CV1-bsc-e-04-0-UI /FEA=EST /CNT=8 /TID=Rn.26639.1 /TIER=Stack /STK=8 /UG=Rn.26639 /UG_TITLE=ESTs BG372418 excision repair cross-complementing rodent repair deficiency, complementation group 2 Ercc2 308415 NM_001172809 0001666 // response to hypoxia // inferred from expression pattern /// 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006289 // nucleotide-excision repair // inferred from electronic annotation 0000441 // SSL2-core TFIIH complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation 1373736_at AI178446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178446 /DB_XREF=gi:3729084 /DB_XREF=EST222119 /CLONE=RPLCR15 /FEA=EST /CNT=8 /TID=Rn.13717.1 /TIER=Stack /STK=8 /UG=Rn.13717 /UG_TITLE=ESTs AI178446 1373737_at BG376997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376997 /DB_XREF=gi:13301469 /DB_XREF=UI-R-CS0-bvm-a-05-0-UI.s1 /CLONE=UI-R-CS0-bvm-a-05-0-UI /FEA=EST /CNT=8 /TID=Rn.15475.1 /TIER=Stack /STK=8 /UG=Rn.15475 /UG_TITLE=ESTs BG376997 WAS protein family homolog 2 Wash2 367328 NM_001127390 0006810 // transport // inferred from electronic annotation /// 0016197 // endosome transport // not recorded /// 0016197 // endosome transport // inferred from sequence or structural similarity /// 0034314 // Arp2/3 complex-mediated actin nucleation // not recorded /// 0034314 // Arp2/3 complex-mediated actin nucleation // inferred from sequence or structural similarity /// 0042147 // retrograde transport, endosome to Golgi // inferred from sequence or structural similarity 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0055037 // recycling endosome // not recorded /// 0055037 // recycling endosome // inferred from sequence or structural similarity /// 0055038 // recycling endosome membrane // inferred from electronic annotation /// 0071203 // WASH complex // inferred from sequence or structural similarity 0003779 // actin binding // inferred from electronic annotation /// 0043014 // alpha-tubulin binding // inferred from sequence or structural similarity 1373738_at BG379494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379494 /DB_XREF=gi:13303966 /DB_XREF=UI-R-CS0-bth-e-11-0-UI.s1 /CLONE=UI-R-CS0-bth-e-11-0-UI /FEA=EST /CNT=8 /TID=Rn.33234.1 /TIER=Stack /STK=8 /UG=Rn.33234 /UG_TITLE=ESTs BG379494 similar to M phase phosphoprotein 6 LOC686999 686999 NM_001129881 1373739_at BF415431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415431 /DB_XREF=gi:11403455 /DB_XREF=UI-R-CA1-bjz-b-11-0-UI.s1 /CLONE=UI-R-CA1-bjz-b-11-0-UI /FEA=EST /CNT=8 /TID=Rn.62919.1 /TIER=Stack /STK=8 /UG=Rn.62919 /UG_TITLE=ESTs BF415431 1373740_at AA851385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851385 /DB_XREF=gi:2938925 /DB_XREF=EST194153 /CLONE=RPLAF95 /FEA=EST /CNT=8 /TID=Rn.6737.1 /TIER=Stack /STK=8 /UG=Rn.6737 /UG_TITLE=ESTs AA851385 1373741_at BM386451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386451 /DB_XREF=gi:18186504 /DB_XREF=UI-R-CN1-cjg-c-07-0-UI.s1 /CLONE=UI-R-CN1-cjg-c-07-0-UI /FEA=EST /CNT=8 /TID=Rn.11475.1 /TIER=Stack /STK=8 /UG=Rn.11475 /UG_TITLE=ESTs, Highly similar to TRUA MOUSE TRNA PSEUDOURIDINE SYNTHASE A (M.musculus) BM386451 pseudouridylate synthase 1 Pus1 304567 NM_001025563 0001522 // pseudouridine synthesis // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0009451 // RNA modification // inferred from electronic annotation /// 0031119 // tRNA pseudouridine synthesis // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0009982 // pseudouridine synthase activity // inferred from electronic annotation /// 0009982 // pseudouridine synthase activity // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded 1373742_at AW526082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526082 /DB_XREF=gi:7168467 /DB_XREF=UI-R-BO1-aiz-a-06-0-UI.s1 /CLONE=UI-R-BO1-aiz-a-06-0-UI /FEA=EST /CNT=8 /TID=Rn.22063.1 /TIER=Stack /STK=8 /UG=Rn.22063 /UG_TITLE=ESTs AW526082 splA/ryanodine receptor domain and SOCS box containing 2 Spsb2 297592 NM_001009660 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded 1373743_at BI295567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295567 /DB_XREF=gi:14959144 /DB_XREF=UI-R-DK0-cev-h-07-0-UI.s1 /CLONE=UI-R-DK0-cev-h-07-0-UI /FEA=EST /CNT=8 /TID=Rn.48634.1 /TIER=Stack /STK=8 /UG=Rn.48634 /UG_TITLE=ESTs BI295567 RWD domain containing 2B Rwdd2b 304132 NM_001100559 1373744_at BF548006 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548006 /DB_XREF=gi:11639113 /DB_XREF=UI-R-E0-bs-e-03-0-UI.r1 /CLONE=UI-R-E0-bs-e-03-0-UI /FEA=EST /CNT=8 /TID=Rn.8.1 /TIER=Stack /STK=8 /UG=Rn.8 /UG_TITLE=ESTs, Highly similar to PROTEIN TSG24 (M.musculus) BF548006 anaphase promoting complex subunit 1 Anapc1 311412 NM_001107771 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070979 // protein K11-linked ubiquitination // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005680 // anaphase-promoting complex // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded 1373745_at BE098273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098273 /DB_XREF=gi:8490136 /DB_XREF=UI-R-BJ1-asz-g-08-0-UI.s1 /CLONE=UI-R-BJ1-asz-g-08-0-UI /FEA=EST /CNT=8 /TID=Rn.24471.1 /TIER=Stack /STK=8 /UG=Rn.24471 /UG_TITLE=ESTs, Highly similar to TFH4_HUMAN TFIIH basal transcription factor complex p52 subunit (Basic transcription factor 52 kDa subunit) (BTF2-p52) (General transcription factor IIH polypeptide 4) (H.sapiens) BE098273 general transcription factor II H, polypeptide 4 Gtf2h4 294236 NM_212501 0000718 // nucleotide-excision repair, DNA damage removal // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005675 // holo TFIIH complex // inferred from electronic annotation /// 0005675 // holo TFIIH complex // not recorded 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008094 // DNA-dependent ATPase activity // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from electronic annotation /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // not recorded 1373746_at BM390756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390756 /DB_XREF=gi:18190809 /DB_XREF=UI-R-CN1-cjr-l-11-0-UI.s1 /CLONE=UI-R-CN1-cjr-l-11-0-UI /FEA=EST /CNT=8 /TID=Rn.48631.1 /TIER=Stack /STK=8 /UG=Rn.48631 /UG_TITLE=ESTs BM390756 WD repeat domain 91 Wdr91 312225 NM_001127298 1373747_at BG381691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381691 /DB_XREF=gi:13306163 /DB_XREF=UI-R-CT0-bue-c-08-0-UI.s1 /CLONE=UI-R-CT0-bue-c-08-0-UI /FEA=EST /CNT=8 /TID=Rn.18785.1 /TIER=Stack /STK=8 /UG=Rn.18785 /UG_TITLE=ESTs BG381691 cornichon homolog 2 (Drosophila) Cnih2 361705 NM_001025132 0023034 // intracellular signaling pathway // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1373748_at AW532566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532566 /DB_XREF=gi:7175020 /DB_XREF=UI-R-BS0-amp-h-04-0-UI.s1 /CLONE=UI-R-BS0-amp-h-04-0-UI /FEA=EST /CNT=8 /TID=Rn.3111.1 /TIER=Stack /STK=8 /UG=Rn.3111 /UG_TITLE=ESTs AW532566 PDZ domain containing RING finger 3 Pdzrn3 312607 XM_001075473 /// XM_232226 0007528 // neuromuscular junction development // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from sequence or structural similarity 0031594 // neuromuscular junction // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373749_at BF395599 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395599 /DB_XREF=gi:11380569 /DB_XREF=UI-R-CM0-bjo-h-07-0-UI.s1 /CLONE=UI-R-CM0-bjo-h-07-0-UI /FEA=EST /CNT=8 /TID=Rn.11788.1 /TIER=Stack /STK=8 /UG=Rn.11788 /UG_TITLE=ESTs BF395599 syntrophin, acidic 1 Snta1 362242 NM_001100901 0007528 // neuromuscular junction development // inferred from electronic annotation /// 0007528 // neuromuscular junction development // not recorded 0042383 // sarcolemma // inferred from electronic annotation /// 0042383 // sarcolemma // not recorded /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0045211 // postsynaptic membrane // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction 1373750_at BF406832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406832 /DB_XREF=gi:11394807 /DB_XREF=UI-R-BJ2-bpp-f-04-0-UI.s1 /CLONE=UI-R-BJ2-bpp-f-04-0-UI /FEA=EST /CNT=8 /TID=Rn.15264.1 /TIER=Stack /STK=8 /UG=Rn.15264 /UG_TITLE=ESTs BF406832 leprecan-like 2 Leprel2 297595 NM_001106620 0055114 // oxidation reduction // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation 1373751_at BF396319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396319 /DB_XREF=gi:11381291 /DB_XREF=UI-R-BS2-bdw-g-07-0-UI.s1 /CLONE=UI-R-BS2-bdw-g-07-0-UI /FEA=EST /CNT=8 /TID=Rn.20626.1 /TIER=Stack /STK=8 /UG=Rn.20626 /UG_TITLE=ESTs BF396319 1373752_at BE108494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108494 /DB_XREF=gi:8500599 /DB_XREF=UI-R-CA0-axc-h-07-0-UI.s1 /CLONE=UI-R-CA0-axc-h-07-0-UI /FEA=EST /CNT=8 /TID=Rn.51496.1 /TIER=Stack /STK=8 /UG=Rn.51496 /UG_TITLE=ESTs BE108494 DEP domain containing 5 Depdc5 305464 NM_001107229 0023034 // intracellular signaling pathway // inferred from electronic annotation 1373753_at BF404406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404406 /DB_XREF=gi:11392381 /DB_XREF=UI-R-CA1-bie-h-04-0-UI.s1 /CLONE=UI-R-CA1-bie-h-04-0-UI /FEA=EST /CNT=8 /TID=Rn.62010.1 /TIER=Stack /STK=8 /UG=Rn.62010 /UG_TITLE=ESTs BF404406 1373754_at AI599232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599232 /DB_XREF=gi:4608280 /DB_XREF=EST250935 /CLONE=REMEC62 /FEA=EST /CNT=8 /TID=Rn.1545.1 /TIER=Stack /STK=8 /UG=Rn.1545 /UG_TITLE=ESTs AI599232 1373755_at AI717543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717543 /DB_XREF=gi:5034799 /DB_XREF=UI-R-Y0-acp-e-06-0-UI.s1 /CLONE=UI-R-Y0-acp-e-06-0-UI /FEA=EST /CNT=8 /TID=Rn.35825.1 /TIER=Stack /STK=8 /UG=Rn.35825 /UG_TITLE=ESTs, Weakly similar to densin-180 (Rattus norvegicus) (R.norvegicus) AI717543 leucine rich repeat containing 39 Lrrc39 691307 NM_001109637 0005515 // protein binding // inferred from electronic annotation 1373756_at BI298757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298757 /DB_XREF=gi:14975037 /DB_XREF=UI-R-CV2-chn-d-02-0-UI.s1 /CLONE=UI-R-CV2-chn-d-02-0-UI /FEA=EST /CNT=8 /TID=Rn.13257.1 /TIER=Stack /STK=8 /UG=Rn.13257 /UG_TITLE=ESTs BI298757 cell cycle exit and neuronal differentiation 1 Cend1 361675 NM_001014163 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1373757_at AW529298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529298 /DB_XREF=gi:7171712 /DB_XREF=UI-R-BT1-akm-d-01-0-UI.s1 /CLONE=UI-R-BT1-akm-d-01-0-UI /FEA=EST /CNT=8 /TID=Rn.16272.1 /TIER=Stack /STK=8 /UG=Rn.16272 /UG_TITLE=ESTs AW529298 TRAF type zinc finger domain containing 1 Trafd1 114635 NM_053760 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0045824 // negative regulation of innate immune response // not recorded /// 0045824 // negative regulation of innate immune response // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373758_at AI171855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171855 /DB_XREF=gi:3711895 /DB_XREF=EST217842 /CLONE=RMUBR59 /FEA=EST /CNT=8 /TID=Rn.22340.1 /TIER=Stack /STK=8 /UG=Rn.22340 /UG_TITLE=ESTs, Weakly similar to T24243 hypothetical protein R53.1 - Caenorhabditis elegans (C.elegans) AI171855 flavin adenine dinucleotide synthetase Flad1 751787 NM_001110138 0006747 // FAD biosynthetic process // inferred from electronic annotation /// 0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0003919 // FMN adenylyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1373759_at BF522317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522317 /DB_XREF=gi:11630284 /DB_XREF=UI-R-C2p-qn-h-10-0-UI.r1 /CLONE=UI-R-C2p-qn-h-10-0-UI /FEA=EST /CNT=8 /TID=Rn.32994.1 /TIER=Stack /STK=8 /UG=Rn.32994 /UG_TITLE=ESTs BF522317 1373760_at BE349725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE349725 /DB_XREF=gi:9261578 /DB_XREF=hq42b10.x1 /CLONE=IMAGE:3122011 /FEA=EST /CNT=8 /TID=Rn.44110.1 /TIER=Stack /STK=8 /UG=Rn.44110 /UG_TITLE=ESTs, Weakly similar to SYTC_HUMAN THREONYL-TRNA SYNTHETASE, CYTOPLASMIC (H.sapiens) BE349725 threonyl-tRNA synthetase 2, mitochondrial (putative) Tars2 310672 NM_001014040 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006435 // threonyl-tRNA aminoacylation // inferred from electronic annotation /// 0043039 // tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004829 // threonine-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016876 // ligase activity, forming aminoacyl-tRNA and related compounds // inferred from electronic annotation 1373761_at AI176129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176129 /DB_XREF=gi:3726767 /DB_XREF=EST219709 /CLONE=ROVBL08 /FEA=EST /CNT=8 /TID=Rn.9154.1 /TIER=Stack /STK=8 /UG=Rn.9154 /UG_TITLE=ESTs AI176129 family with sequence similarity 60, member A Fam60a 686611 NM_001134711 /// NM_001134712 1373762_a_at BF410953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410953 /DB_XREF=gi:11398928 /DB_XREF=UI-R-CN0-bmi-a-03-0-UI.s1 /CLONE=UI-R-CN0-bmi-a-03-0-UI /FEA=EST /CNT=8 /TID=Rn.61793.1 /TIER=Stack /STK=8 /UG=Rn.61793 /UG_TITLE=ESTs, Weakly similar to BORT1 prostatic steroid-binding protein chain C1 precursor - rat (R.norvegicus) BF410953 PBPC1BS-like LOC100362601 100362601 XM_002725736 /// XM_002728829 0005576 // extracellular region // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1373763_at AI013512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013512 /DB_XREF=gi:3227568 /DB_XREF=EST208187 /CLONE=RSPBN06 /FEA=EST /CNT=8 /TID=Rn.7867.1 /TIER=Stack /STK=8 /UG=Rn.7867 /UG_TITLE=ESTs AI013512 zinc finger and BTB domain containing 43 Zbtb43 311872 NM_001012094 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373764_at AI235272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235272 /DB_XREF=gi:3828778 /DB_XREF=EST231834 /CLONE=ROVCP66 /FEA=EST /CNT=8 /TID=Rn.15272.1 /TIER=Stack /STK=8 /UG=Rn.15272 /UG_TITLE=ESTs, Weakly similar to MATRIN 3 (R.norvegicus) AI235272 zinc finger, matrin-like Zfml 312491 NM_001107868 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1373765_at BG371708 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371708 /DB_XREF=gi:13268245 /DB_XREF=UI-R-CV0-brh-c-06-0-UI.s1 /CLONE=UI-R-CV0-brh-c-06-0-UI /FEA=EST /CNT=8 /TID=Rn.17913.1 /TIER=Stack /STK=8 /UG=Rn.17913 /UG_TITLE=ESTs BG371708 1373766_at BF405110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405110 /DB_XREF=gi:11393085 /DB_XREF=UI-R-CA1-bip-g-08-0-UI.s1 /CLONE=UI-R-CA1-bip-g-08-0-UI /FEA=EST /CNT=8 /TID=Rn.15233.1 /TIER=Stack /STK=8 /UG=Rn.15233 /UG_TITLE=ESTs BF405110 1373767_at AI406908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406908 /DB_XREF=gi:4250412 /DB_XREF=EST235196 /CLONE=ROVDU58 /FEA=EST /CNT=8 /TID=Rn.19157.1 /TIER=Stack /STK=8 /UG=Rn.19157 /UG_TITLE=ESTs AI406908 zinc finger, AN1-type domain 2A Zfand2a 360772 NM_001008363 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373768_at AI406390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406390 /DB_XREF=gi:4249894 /DB_XREF=EST234676 /CLONE=RBRDP63 /FEA=EST /CNT=8 /TID=Rn.41094.1 /TIER=Stack /STK=8 /UG=Rn.41094 /UG_TITLE=ESTs, Weakly similar to S65236 probable membrane protein YPL217c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AI406390 BMS1 homolog, ribosome assembly protein (yeast) Bms1 362426 NM_001100751 /// XM_001057343 /// XM_342746 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1373769_at AI176913 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176913 /DB_XREF=gi:3727551 /DB_XREF=EST220519 /CLONE=ROVBY50 /FEA=EST /CNT=8 /TID=Rn.8356.1 /TIER=Stack /STK=8 /UG=Rn.8356 /UG_TITLE=ESTs, Weakly similar to Phosphoglucomutase and phosphomannomutase phosphoserine (Caenorhabditis elegans) (C.elegans) AI176913 phosphoglucomutase 2 Pgm2 289632 NM_001106007 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0008152 // metabolic process // not recorded 0005829 // cytosol // not recorded 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004614 // phosphoglucomutase activity // inferred from electronic annotation /// 0004614 // phosphoglucomutase activity // not recorded /// 0016868 // intramolecular transferase activity, phosphotransferases // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373770_at AI105345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105345 /DB_XREF=gi:3709445 /DB_XREF=EST214634 /CLONE=RKIBJ14 /FEA=EST /CNT=8 /TID=Rn.13292.1 /TIER=Stack /STK=8 /UG=Rn.13292 /UG_TITLE=ESTs AI105345 1373771_at AI101164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101164 /DB_XREF=gi:3706123 /DB_XREF=EST210453 /CLONE=RBRBG35 /FEA=EST /CNT=8 /TID=Rn.28058.1 /TIER=Stack /STK=8 /UG=Rn.28058 /UG_TITLE=ESTs AI101164 1373772_at AI179516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179516 /DB_XREF=gi:3730154 /DB_XREF=EST223235 /CLONE=RSPCI42 /FEA=EST /CNT=8 /TID=Rn.6955.1 /TIER=Stack /STK=8 /UG=Rn.6955 /UG_TITLE=ESTs, Highly similar to JE0378 DNA (R.norvegicus) AI179516 DNA (cytosine-5-)-methyltransferase 1 Dnmt1 84350 NM_053354 0006306 // DNA methylation // inferred from electronic annotation /// 0006306 // DNA methylation // not recorded /// 0006306 // DNA methylation // traceable author statement /// 0006350 // transcription // inferred from electronic annotation /// 0010216 // maintenance of DNA methylation // inferred from direct assay /// 0010216 // maintenance of DNA methylation // not recorded /// 0010424 // DNA methylation on cytosine within a CG sequence // inferred from direct assay /// 0010468 // regulation of gene expression // not recorded /// 0010628 // positive regulation of gene expression // not recorded /// 0016458 // gene silencing // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0046498 // S-adenosylhomocysteine metabolic process // inferred from direct assay /// 0046499 // S-adenosylmethioninamine metabolic process // inferred from direct assay /// 0046500 // S-adenosylmethionine metabolic process // inferred from direct assay /// 0051571 // positive regulation of histone H3-K4 methylation // not recorded /// 0051573 // negative regulation of histone H3-K9 methylation // not recorded /// 0090116 // C-5 methylation of cytosine // not recorded 0000792 // heterochromatin // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005657 // replication fork // not recorded /// 0005721 // centromeric heterochromatin // not recorded /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003886 // DNA (cytosine-5-)-methyltransferase activity // inferred from direct assay /// 0003886 // DNA (cytosine-5-)-methyltransferase activity // inferred from electronic annotation /// 0003886 // DNA (cytosine-5-)-methyltransferase activity // inferred from genetic interaction /// 0003886 // DNA (cytosine-5-)-methyltransferase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0008327 // methyl-CpG binding // inferred from direct assay /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // traceable author statement /// 0009008 // DNA-methyltransferase activity // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0045322 // unmethylated CpG binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051718 // DNA (cytosine-5-)-methyltransferase activity, acting on CpG substrates // inferred from direct assay 1373773_at BF394166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394166 /DB_XREF=gi:11379030 /DB_XREF=UI-R-CA0-bha-h-01-0-UI.s1 /CLONE=UI-R-CA0-bha-h-01-0-UI /FEA=EST /CNT=8 /TID=Rn.34370.1 /TIER=Stack /STK=8 /UG=Rn.34370 /UG_TITLE=ESTs BF394166 glycoprotein m6a Gpm6a 306439 NM_178105 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded 0005262 // calcium channel activity // inferred from direct assay 1373774_at AI412619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412619 /DB_XREF=gi:4256123 /DB_XREF=EST240918 /CLONE=RBRDK48 /FEA=EST /CNT=8 /TID=Rn.40378.1 /TIER=Stack /STK=8 /UG=Rn.40378 /UG_TITLE=ESTs AI412619 Ras-like without CAAX 2 Rit2 291713 NM_001013060 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1373775_at AI232313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232313 /DB_XREF=gi:3816193 /DB_XREF=EST229001 /CLONE=RKICA10 /FEA=EST /CNT=8 /TID=Rn.7176.2 /TIER=Stack /STK=8 /UG=Rn.7176 /LL=29659 /UG_GENE=P2rx4 /UG_TITLE=purinergic receptor P2X, ligand-gated ion channel 4 AI232313 Negative regulator of ubiquitin-like proteins 1 Nub1 296731 NM_001013925 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0034341 // response to interferon-gamma // not recorded /// 0034612 // response to tumor necrosis factor // not recorded 0005515 // protein binding // not recorded 1373776_at AI406341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406341 /DB_XREF=gi:4249845 /DB_XREF=EST234627 /CLONE=RBRDM22 /FEA=EST /CNT=8 /TID=Rn.8740.1 /TIER=Stack /STK=8 /UG=Rn.8740 /UG_TITLE=ESTs AI406341 1373777_at BF391820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391820 /DB_XREF=gi:11376675 /DB_XREF=UI-R-CA1-bcy-a-04-0-UI.s1 /CLONE=UI-R-CA1-bcy-a-04-0-UI /FEA=EST /CNT=8 /TID=Rn.1141.1 /TIER=Stack /STK=8 /UG=Rn.1141 /UG_TITLE=ESTs BF391820 1373778_at BE349670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE349670 /DB_XREF=gi:9261523 /DB_XREF=hq41d09.x1 /CLONE=IMAGE:3121937 /FEA=EST /CNT=8 /TID=Rn.18425.1 /TIER=Stack /STK=8 /UG=Rn.18425 /UG_TITLE=ESTs BE349670 1373779_at AI011878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011878 /DB_XREF=gi:3225710 /DB_XREF=EST206329 /CLONE=RPLAP93 /FEA=EST /CNT=8 /TID=Rn.3279.1 /TIER=Stack /STK=8 /UG=Rn.3279 /UG_TITLE=ESTs AI011878 Max dimerization protein 4 Mxd4 360961 NM_001108364 0016481 // negative regulation of transcription // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1373780_at BE349699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE349699 /DB_XREF=gi:9261552 /DB_XREF=hq41g07.x1 /CLONE=IMAGE:3121980 /FEA=EST /CNT=8 /TID=Rn.33830.1 /TIER=Stack /STK=8 /UG=Rn.33830 /UG_TITLE=ESTs, Moderately similar to A59262 tetraspan TSPAN-1 (H.sapiens) BE349699 tetraspanin 1 Tspan1 298436 NM_001004236 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1373781_a_at AI555257 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555257 /DB_XREF=gi:4487620 /DB_XREF=UI-R-C2p-qv-e-10-0-UI.s1 /CLONE=UI-R-C2p-qv-e-10-0-UI /FEA=EST /CNT=8 /TID=Rn.8878.1 /TIER=Stack /STK=8 /UG=Rn.8878 /UG_TITLE=ESTs, Highly similar to G3PT MOUSE GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, TESTIS-SPECIFIC (M.musculus) AI555257 suprabasin Sbsn 292793 NM_001044231 /// NM_001198590 /// NM_001198591 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1373782_a_at AW253957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253957 /DB_XREF=gi:6597548 /DB_XREF=UI-R-BJ0-aed-d-03-0-UI.s1 /CLONE=UI-R-BJ0-aed-d-03-0-UI /FEA=EST /CNT=9 /TID=Rn.22119.2 /TIER=Stack /STK=7 /UG=Rn.22119 /UG_TITLE=ESTs, Highly similar to NUCG MOUSE ENDONUCLEASE G PRECURSOR (M.musculus) AW253957 similar to LOC495800 protein LOC499770 499770 NM_001047110 1373783_at AA943917 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943917 /DB_XREF=gi:3103833 /DB_XREF=EST199416 /CLONE=RBRAR31 /FEA=EST /CNT=8 /TID=Rn.7662.1 /TIER=Stack /STK=8 /UG=Rn.7662 /UG_TITLE=ESTs AA943917 1373784_at BF409759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409759 /DB_XREF=gi:11397734 /DB_XREF=UI-R-CA1-bls-e-02-0-UI.s1 /CLONE=UI-R-CA1-bls-e-02-0-UI /FEA=EST /CNT=8 /TID=Rn.18515.1 /TIER=Stack /STK=8 /UG=Rn.18515 /UG_TITLE=ESTs, Weakly similar to UBPW MOUSE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE DUB-1 (M.musculus) BF409759 chaperonin containing Tcp1, subunit 8 (theta) Cct8 288305 NM_001105897 0006457 // protein folding // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1373785_at AA848738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848738 /DB_XREF=gi:2936278 /DB_XREF=EST191498 /CLONE=RLUAE85 /FEA=EST /CNT=8 /TID=Rn.6379.1 /TIER=Stack /STK=8 /UG=Rn.6379 /UG_TITLE=ESTs AA848738 phospholipase D family, member 4 Pld4 362792 NM_001126288 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373786_at AA924756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924756 /DB_XREF=gi:4235947 /DB_XREF=UI-R-A1-ed-h-10-0-UI.s1 /CLONE=UI-R-A1-ed-h-10-0-UI /FEA=EST /CNT=8 /TID=Rn.15384.1 /TIER=Stack /STK=8 /UG=Rn.15384 /UG_TITLE=ESTs AA924756 zinc finger protein 703 Znf703 680717 NM_001109425 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1373787_at AA943735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943735 /DB_XREF=gi:3103651 /DB_XREF=EST199234 /CLONE=RBRAP04 /FEA=EST /CNT=8 /TID=Rn.32110.3 /TIER=Stack /STK=8 /UG=Rn.32110 /LL=116509 /UG_GENE=Glyt1 /UG_TITLE=glycine transporter 1 AA943735 solute carrier family 6 (neurotransmitter transporter, glycine), member 9 Slc6a9 116509 NM_053818 0003333 // amino acid transmembrane transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from electronic annotation /// 0015816 // glycine transport // not recorded 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005283 // sodium:amino acid symporter activity // inferred from electronic annotation /// 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0015187 // glycine transmembrane transporter activity // not recorded /// 0015187 // glycine transmembrane transporter activity // traceable author statement /// 0015293 // symporter activity // inferred from electronic annotation 1373788_at BE097533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097533 /DB_XREF=gi:8488464 /DB_XREF=UI-R-BO1-apy-f-04-0-UI.s1 /CLONE=UI-R-BO1-apy-f-04-0-UI /FEA=EST /CNT=8 /TID=Rn.12000.1 /TIER=Stack /STK=8 /UG=Rn.12000 /UG_TITLE=ESTs BE097533 solute carrier family 41, member 1 Slc41a1 363985 NM_001108855 0008324 // cation transmembrane transporter activity // inferred from electronic annotation 1373789_at AW254358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254358 /DB_XREF=gi:6597949 /DB_XREF=UI-R-BJ0-aew-h-08-0-UI.s1 /CLONE=UI-R-BJ0-aew-h-08-0-UI /FEA=EST /CNT=8 /TID=Rn.38705.1 /TIER=Stack /STK=8 /UG=Rn.38705 /UG_TITLE=ESTs AW254358 1373790_at AI045400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045400 /DB_XREF=gi:3292219 /DB_XREF=UI-R-C1-kg-b-11-0-UI.s1 /CLONE=UI-R-C1-kg-b-11-0-UI /FEA=EST /CNT=8 /TID=Rn.9408.1 /TIER=Stack /STK=8 /UG=Rn.9408 /UG_TITLE=ESTs AI045400 1373791_at BI289399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289399 /DB_XREF=gi:14946928 /DB_XREF=UI-R-DK0-cfg-e-04-0-UI.s1 /CLONE=UI-R-DK0-cfg-e-04-0-UI /FEA=EST /CNT=8 /TID=Rn.42122.1 /TIER=Stack /STK=8 /UG=Rn.42122 /UG_TITLE=ESTs, Moderately similar to T34521 hypothetical protein DKFZp566J2324.1 (H.sapiens) BI289399 similar to RIKEN cDNA 2310011J03 RGD1359127 299612 NM_001007657 0005515 // protein binding // not recorded 1373792_at AI228348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228348 /DB_XREF=gi:3812235 /DB_XREF=EST225043 /CLONE=RBRCT57 /FEA=EST /CNT=8 /TID=Rn.24317.1 /TIER=Stack /STK=8 /UG=Rn.24317 /UG_TITLE=ESTs AI228348 ARP1 actin-related protein 1 homolog B (yeast) Actr1b 316333 NM_001039028 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1373793_at BE097786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097786 /DB_XREF=gi:8488717 /DB_XREF=UI-R-BO1-aqb-g-01-0-UI.s1 /CLONE=UI-R-BO1-aqb-g-01-0-UI /FEA=EST /CNT=8 /TID=Rn.2340.1 /TIER=Stack /STK=8 /UG=Rn.2340 /UG_TITLE=ESTs, Weakly similar to FPRP RAT PROSTAGLANDIN F2-ALPHA RECEPTOR REGULATORY PROTEIN PRECURSOR (R.norvegicus) BE097786 immunoglobulin superfamily, member 8 Igsf8 304979 NM_001014787 0016021 // integral to membrane // not recorded 0005515 // protein binding // not recorded 1373794_at BE329050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329050 /DB_XREF=gi:9202826 /DB_XREF=hq36b05.x1 /CLONE=IMAGE:3121425 /FEA=EST /CNT=8 /TID=Rn.20248.1 /TIER=Stack /STK=8 /UG=Rn.20248 /UG_TITLE=ESTs, Moderately similar to A53770 growth factor-responsive protein, vascular smooth muscle - rat (R.norvegicus) BE329050 EGL nine homolog 2 (C. elegans) Egln2 308457 NM_001004083 0001666 // response to hypoxia // inferred from direct assay /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from sequence or structural similarity /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0045454 // cell redox homeostasis // not recorded /// 0045454 // cell redox homeostasis // inferred from sequence or structural similarity /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0016706 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors // not recorded /// 0016706 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors // inferred from sequence or structural similarity /// 0016706 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors // inferred from electronic annotation /// 0019826 // oxygen sensor activity // not recorded /// 0019826 // oxygen sensor activity // inferred from sequence or structural similarity /// 0019826 // oxygen sensor activity // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation 1373795_at BE106860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106860 /DB_XREF=gi:8498962 /DB_XREF=UI-R-BT1-asu-a-10-0-UI.s1 /CLONE=UI-R-BT1-asu-a-10-0-UI /FEA=EST /CNT=8 /TID=Rn.51062.1 /TIER=Stack /STK=8 /UG=Rn.51062 /UG_TITLE=ESTs BE106860 1373796_at BI297962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297962 /DB_XREF=gi:14974242 /DB_XREF=UI-R-CV2-chd-g-02-0-UI.s1 /CLONE=UI-R-CV2-chd-g-02-0-UI /FEA=EST /CNT=8 /TID=Rn.66327.1 /TIER=Stack /STK=8 /UG=Rn.66327 /UG_TITLE=ESTs BI297962 1373797_at BF417430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417430 /DB_XREF=gi:11405419 /DB_XREF=UI-R-CN0-blg-a-09-0-UI.s1 /CLONE=UI-R-CN0-blg-a-09-0-UI /FEA=EST /CNT=8 /TID=Rn.15884.1 /TIER=Stack /STK=8 /UG=Rn.15884 /UG_TITLE=ESTs BF417430 hyaluronoglucosaminidase 3 Hyal3 300993 NM_207599 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004415 // hyalurononglucosaminidase activity // inferred from electronic annotation /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation 1373798_at BF393439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393439 /DB_XREF=gi:11378300 /DB_XREF=UI-R-CA0-bgc-h-12-0-UI.s1 /CLONE=UI-R-CA0-bgc-h-12-0-UI /FEA=EST /CNT=8 /TID=Rn.62955.1 /TIER=Stack /STK=8 /UG=Rn.62955 /UG_TITLE=ESTs BF393439 similar to CG5435-PA RGD1309139 362020 NM_001134578 1373799_at BF415845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415845 /DB_XREF=gi:11403834 /DB_XREF=UI-R-CA1-bkf-f-06-0-UI.s1 /CLONE=UI-R-CA1-bkf-f-06-0-UI /FEA=EST /CNT=8 /TID=Rn.49093.1 /TIER=Stack /STK=8 /UG=Rn.49093 /UG_TITLE=ESTs BF415845 1373800_at BF394493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394493 /DB_XREF=gi:11379359 /DB_XREF=UI-R-CA0-bfw-e-05-0-UI.s1 /CLONE=UI-R-CA0-bfw-e-05-0-UI /FEA=EST /CNT=8 /TID=Rn.58292.1 /TIER=Stack /STK=8 /UG=Rn.58292 /UG_TITLE=ESTs BF394493 1373801_at BF404819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404819 /DB_XREF=gi:11392794 /DB_XREF=UI-R-CA1-bic-a-09-0-UI.s1 /CLONE=UI-R-CA1-bic-a-09-0-UI /FEA=EST /CNT=8 /TID=Rn.63570.1 /TIER=Stack /STK=8 /UG=Rn.63570 /UG_TITLE=ESTs BF404819 1373802_at BF392902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392902 /DB_XREF=gi:11377761 /DB_XREF=UI-R-CA0-bfq-e-11-0-UI.s1 /CLONE=UI-R-CA0-bfq-e-11-0-UI /FEA=EST /CNT=8 /TID=Rn.52283.1 /TIER=Stack /STK=8 /UG=Rn.52283 /UG_TITLE=ESTs BF392902 Choroideremia (Rab escort protein 1) Chm 24942 NM_017067 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0043087 // regulation of GTPase activity // inferred from electronic annotation 0005968 // Rab-protein geranylgeranyltransferase complex // inferred from electronic annotation 0004663 // Rab geranylgeranyltransferase activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017137 // Rab GTPase binding // inferred from direct assay 1373803_a_at AI170771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170771 /DB_XREF=gi:3710811 /DB_XREF=EST216710 /CLONE=RMUBB31 /FEA=EST /CNT=8 /TID=Rn.2178.2 /TIER=Stack /STK=8 /UG=Rn.2178 /LL=25235 /UG_GENE=Ghr /UG_TITLE=Growth hormone receptor AI170771 growth hormone receptor Ghr 25235 NM_017094 0000187 // activation of MAPK activity // inferred from direct assay /// 0000255 // allantoin metabolic process // inferred from electronic annotation /// 0000255 // allantoin metabolic process // not recorded /// 0006101 // citrate metabolic process // inferred from electronic annotation /// 0006101 // citrate metabolic process // not recorded /// 0006103 // 2-oxoglutarate metabolic process // inferred from electronic annotation /// 0006103 // 2-oxoglutarate metabolic process // not recorded /// 0006105 // succinate metabolic process // inferred from electronic annotation /// 0006105 // succinate metabolic process // not recorded /// 0006107 // oxaloacetate metabolic process // inferred from electronic annotation /// 0006107 // oxaloacetate metabolic process // not recorded /// 0006549 // isoleucine metabolic process // inferred from electronic annotation /// 0006549 // isoleucine metabolic process // not recorded /// 0006573 // valine metabolic process // inferred from electronic annotation /// 0006573 // valine metabolic process // not recorded /// 0006600 // creatine metabolic process // inferred from electronic annotation /// 0006600 // creatine metabolic process // not recorded /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // not recorded /// 0006897 // endocytosis // inferred from electronic annotation /// 0007259 // JAK-STAT cascade // inferred from direct assay /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0009755 // hormone-mediated signaling pathway // inferred from direct assay /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019530 // taurine metabolic process // inferred from electronic annotation /// 0019530 // taurine metabolic process // not recorded /// 0031623 // receptor internalization // inferred from electronic annotation /// 0031623 // receptor internalization // not recorded /// 0032094 // response to food // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // not recorded /// 0032870 // cellular response to hormone stimulus // inferred from electronic annotation /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0040014 // regulation of multicellular organism growth // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0042977 // activation of JAK2 kinase activity // inferred from direct assay /// 0043278 // response to morphine // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0043526 // neuroprotection // inferred from direct assay /// 0044236 // multicellular organismal metabolic process // inferred from electronic annotation /// 0044236 // multicellular organismal metabolic process // not recorded /// 0045597 // positive regulation of cell differentiation // inferred from expression pattern /// 0045597 // positive regulation of cell differentiation // traceable author statement /// 0046427 // positive regulation of JAK-STAT cascade // inferred from direct assay /// 0046427 // positive regulation of JAK-STAT cascade // inferred from mutant phenotype /// 0046449 // creatinine metabolic process // inferred from electronic annotation /// 0046449 // creatinine metabolic process // not recorded /// 0046898 // response to cycloheximide // inferred from electronic annotation /// 0046898 // response to cycloheximide // not recorded /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0048009 // insulin-like growth factor receptor signaling pathway // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0060351 // cartilage development involved in endochondral bone morphogenesis // inferred from expression pattern /// 0060396 // growth hormone receptor signaling pathway // inferred from direct assay /// 0060396 // growth hormone receptor signaling pathway // not recorded /// 0060396 // growth hormone receptor signaling pathway // inferred from electronic annotation /// 0070555 // response to interleukin-1 // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019898 // extrinsic to membrane // inferred from electronic annotation /// 0019898 // extrinsic to membrane // not recorded /// 0043025 // neuronal cell body // inferred from direct assay /// 0043235 // receptor complex // not recorded /// 0043235 // receptor complex // inferred from electronic annotation /// 0070195 // growth hormone receptor complex // inferred from electronic annotation /// 0070195 // growth hormone receptor complex // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004903 // growth hormone receptor activity // inferred from direct assay /// 0004903 // growth hormone receptor activity // not recorded /// 0004903 // growth hormone receptor activity // traceable author statement /// 0004903 // growth hormone receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred from direct assay /// 0017046 // peptide hormone binding // not recorded /// 0017046 // peptide hormone binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded /// 0019901 // protein kinase binding // inferred from direct assay /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019903 // protein phosphatase binding // inferred from mutant phenotype /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0042169 // SH2 domain binding // inferred from direct assay /// 0042169 // SH2 domain binding // inferred from mutant phenotype /// 0042169 // SH2 domain binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1373804_at AI230954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230954 /DB_XREF=gi:4135600 /DB_XREF=EST227642 /CLONE=REMDD38 /FEA=EST /CNT=8 /TID=Rn.13831.1 /TIER=Stack /STK=8 /UG=Rn.13831 /UG_TITLE=ESTs, Weakly similar to HEPATOCYTE NUCLEAR FACTOR 3 FORKHEAD HOMOLOG 4 (R.norvegicus) AI230954 forkhead box P1 Foxp1 297480 NM_001034131 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0002329 // pre-B cell differentiation // not recorded /// 0002639 // positive regulation of immunoglobulin production // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007519 // skeletal muscle tissue development // not recorded /// 0009790 // embryo development // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030324 // lung development // not recorded /// 0033152 // immunoglobulin V(D)J recombination // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048745 // smooth muscle tissue development // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0055007 // cardiac muscle cell differentiation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1373805_at BI285778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285778 /DB_XREF=gi:14939770 /DB_XREF=UI-R-CX0s-cct-g-07-0-UI.s1 /CLONE=UI-R-CX0s-cct-g-07-0-UI /FEA=EST /CNT=8 /TID=Rn.78420.1 /TIER=Stack /STK=8 /UG=Rn.78420 /UG_TITLE=ESTs, Moderately similar to JC7183 cathepsin Q (EC 3.4.22.-) precursor (accepted) - rat (R.norvegicus) BI285778 cathepsin R Ctsr 290975 NM_175581 0006508 // proteolysis // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation 1373806_at AI044859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044859 /DB_XREF=gi:3291678 /DB_XREF=UI-R-C1-kd-c-11-0-UI.s1 /CLONE=UI-R-C1-kd-c-11-0-UI /FEA=EST /CNT=32 /TID=Rn.4161.1 /TIER=Stack /STK=7 /UG=Rn.4161 /UG_TITLE=ESTs AI044859 coiled-coil domain containing 104 Ccdc104 289859 NM_001024866 1373807_at AI175732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175732 /DB_XREF=gi:3726370 /DB_XREF=EST219297 /CLONE=ROVBE53 /FEA=EST /CNT=29 /TID=Rn.8168.1 /TIER=Stack /STK=7 /UG=Rn.8168 /UG_TITLE=ESTs AI175732 vascular endothelial growth factor A Vegfa 83785 NM_001110333 /// NM_001110334 /// NM_001110335 /// NM_001110336 /// NM_031836 0001525 // angiogenesis // inferred from mutant phenotype /// 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // traceable author statement /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001541 // ovarian follicle development // inferred from electronic annotation /// 0001541 // ovarian follicle development // not recorded /// 0001568 // blood vessel development // not recorded /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001666 // response to hypoxia // inferred from direct assay /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0001944 // vasculature development // not recorded /// 0001944 // vasculature development // inferred from electronic annotation /// 0001974 // blood vessel remodeling // inferred from mutant phenotype /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0002575 // basophil chemotaxis // inferred from electronic annotation /// 0002575 // basophil chemotaxis // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from direct assay /// 0007399 // nervous system development // non-traceable author statement /// 0007498 // mesoderm development // inferred from electronic annotation /// 0007498 // mesoderm development // not recorded /// 0007595 // lactation // inferred from electronic annotation /// 0007595 // lactation // not recorded /// 0007610 // behavior // inferred from electronic annotation /// 0007610 // behavior // not recorded /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0009409 // response to cold // inferred from expression pattern /// 0009967 // positive regulation of signal transduction // inferred from direct assay /// 0010595 // positive regulation of endothelial cell migration // not recorded /// 0010595 // positive regulation of endothelial cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0031077 // post-embryonic camera-type eye development // inferred from electronic annotation /// 0031077 // post-embryonic camera-type eye development // not recorded /// 0040007 // growth // inferred from electronic annotation /// 0040007 // growth // not recorded /// 0042088 // T-helper 1 type immune response // inferred from direct assay /// 0042462 // eye photoreceptor cell development // inferred from electronic annotation /// 0042462 // eye photoreceptor cell development // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043069 // negative regulation of programmed cell death // inferred from mutant phenotype /// 0043117 // positive regulation of vascular permeability // inferred from mutant phenotype /// 0043117 // positive regulation of vascular permeability // not recorded /// 0043117 // positive regulation of vascular permeability // inferred from electronic annotation /// 0043129 // surfactant homeostasis // inferred from electronic annotation /// 0043129 // surfactant homeostasis // not recorded /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from electronic annotation /// 0043536 // positive regulation of blood vessel endothelial cell migration // not recorded /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0045779 // negative regulation of bone resorption // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0048008 // platelet-derived growth factor receptor signaling pathway // not recorded /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from mutant phenotype /// 0048010 // vascular endothelial growth factor receptor signaling pathway // not recorded /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0048255 // mRNA stabilization // inferred from direct assay /// 0048286 // lung alveolus development // inferred from mutant phenotype /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded /// 0048514 // blood vessel morphogenesis // not recorded /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0048739 // cardiac muscle fiber development // inferred from electronic annotation /// 0048739 // cardiac muscle fiber development // not recorded /// 0048754 // branching morphogenesis of a tube // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048844 // artery morphogenesis // inferred from electronic annotation /// 0048844 // artery morphogenesis // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050927 // positive regulation of positive chemotaxis // not recorded /// 0050927 // positive regulation of positive chemotaxis // inferred from electronic annotation /// 0050930 // induction of positive chemotaxis // inferred from electronic annotation /// 0050930 // induction of positive chemotaxis // not recorded /// 0051272 // positive regulation of cellular component movement // inferred from electronic annotation /// 0051272 // positive regulation of cellular component movement // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0060319 // primitive erythrocyte differentiation // inferred from electronic annotation /// 0060319 // primitive erythrocyte differentiation // not recorded /// 0060749 // mammary gland alveolus development // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // not recorded /// 0060754 // positive regulation of mast cell chemotaxis // inferred from electronic annotation /// 0060754 // positive regulation of mast cell chemotaxis // not recorded /// 0071456 // cellular response to hypoxia // inferred from electronic annotation /// 0071456 // cellular response to hypoxia // not recorded /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005604 // basement membrane // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from electronic annotation /// 0030141 // stored secretory granule // not recorded /// 0031093 // platelet alpha granule lumen // not recorded /// 0031988 // membrane-bounded vesicle // inferred from direct assay 0001968 // fibronectin binding // inferred from electronic annotation /// 0001968 // fibronectin binding // not recorded /// 0005161 // platelet-derived growth factor receptor binding // inferred from electronic annotation /// 0005161 // platelet-derived growth factor receptor binding // not recorded /// 0005172 // vascular endothelial growth factor receptor binding // not recorded /// 0005172 // vascular endothelial growth factor receptor binding // traceable author statement /// 0005172 // vascular endothelial growth factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded /// 0042056 // chemoattractant activity // inferred from electronic annotation /// 0042056 // chemoattractant activity // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043183 // vascular endothelial growth factor receptor 1 binding // inferred from electronic annotation /// 0043183 // vascular endothelial growth factor receptor 1 binding // not recorded /// 0043184 // vascular endothelial growth factor receptor 2 binding // inferred from electronic annotation /// 0043184 // vascular endothelial growth factor receptor 2 binding // inferred from mutant phenotype /// 0043184 // vascular endothelial growth factor receptor 2 binding // not recorded /// 0043498 // cell surface binding // inferred from electronic annotation /// 0043498 // cell surface binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1373808_at BF417211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417211 /DB_XREF=gi:11405200 /DB_XREF=UI-R-CN0-blc-d-05-0-UI.s1 /CLONE=UI-R-CN0-blc-d-05-0-UI /FEA=EST /CNT=36 /TID=Rn.13986.1 /TIER=Stack /STK=12 /UG=Rn.13986 /UG_TITLE=ESTs BF417211 1373809_at BI296325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296325 /DB_XREF=gi:14960651 /DB_XREF=UI-R-DK0-cez-a-12-0-UI.s1 /CLONE=UI-R-DK0-cez-a-12-0-UI /FEA=EST /CNT=23 /TID=Rn.7060.1 /TIER=Stack /STK=7 /UG=Rn.7060 /UG_TITLE=ESTs, Highly similar to T08798 hypothetical protein DKFZp586B0923.1 (H.sapiens) BI296325 hypothetical protein LOC606294 LOC606294 606294 NM_001031627 0006839 // mitochondrial transport // not recorded /// 0006839 // mitochondrial transport // inferred from sequence or structural similarity /// 0006839 // mitochondrial transport // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019894 // kinesin binding // inferred from electronic annotation /// 0019894 // kinesin binding // not recorded 1373810_at BF284175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284175 /DB_XREF=gi:11215245 /DB_XREF=EST448766 /CLONE=RGIEL87 /FEA=EST /CNT=30 /TID=Rn.225.1 /TIER=Stack /STK=7 /UG=Rn.225 /UG_TITLE=ESTs BF284175 phospholipase A2, group XIIA Pla2g12a 362039 NM_001108565 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0016042 // lipid catabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation 0004623 // phospholipase A2 activity // inferred from electronic annotation /// 0004623 // phospholipase A2 activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation 1373811_at AA942728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA942728 /DB_XREF=gi:3102644 /DB_XREF=EST198227 /CLONE=RBRAA47 /FEA=EST /CNT=20 /TID=Rn.22951.1 /TIER=Stack /STK=7 /UG=Rn.22951 /UG_TITLE=ESTs, Highly similar to GDS1_HUMAN RAP1 GTPASE-GDP DISSOCIATION STIMULATOR 1 (H.sapiens) AA942728 RAP1, GTP-GDP dissociation stimulator 1 Rap1gds1 310909 NM_001107728 0014829 // vascular smooth muscle contraction // inferred from mutant phenotype /// 0031034 // myosin filament assembly // inferred from mutant phenotype /// 0032321 // positive regulation of Rho GTPase activity // inferred from mutant phenotype 0005488 // binding // inferred from electronic annotation 1373812_at BE110915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110915 /DB_XREF=gi:8503020 /DB_XREF=UI-R-BJ1-aux-d-09-0-UI.s1 /CLONE=UI-R-BJ1-aux-d-09-0-UI /FEA=EST /CNT=28 /TID=Rn.29897.1 /TIER=Stack /STK=7 /UG=Rn.29897 /UG_TITLE=ESTs BE110915 cyclin-dependent kinase inhibitor 1B Cdkn1b 83571 NM_031762 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0006813 // potassium ion transport // not recorded /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006950 // response to stress // inferred from expression pattern /// 0007050 // cell cycle arrest // not recorded /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0008219 // cell death // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030308 // negative regulation of cell growth // not recorded /// 0031116 // positive regulation of microtubule polymerization // not recorded /// 0031116 // positive regulation of microtubule polymerization // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0033673 // negative regulation of kinase activity // not recorded /// 0042326 // negative regulation of phosphorylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // not recorded /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0048102 // autophagic cell death // not recorded /// 0048839 // inner ear development // not recorded /// 0048839 // inner ear development // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0051271 // negative regulation of cellular component movement // not recorded /// 0051271 // negative regulation of cellular component movement // inferred from electronic annotation /// 0060770 // negative regulation of epithelial cell proliferation involved in prostate gland development // not recorded /// 0060770 // negative regulation of epithelial cell proliferation involved in prostate gland development // inferred from electronic annotation /// 0071236 // cellular response to antibiotic // not recorded /// 0071285 // cellular response to lithium ion // not recorded /// 0071407 // cellular response to organic cyclic substance // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0004861 // cyclin-dependent protein kinase inhibitor activity // not recorded /// 0004861 // cyclin-dependent protein kinase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction /// 0051087 // chaperone binding // inferred from physical interaction 1373813_at BM388610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388610 /DB_XREF=gi:18188668 /DB_XREF=UI-R-DZ0-ckm-f-05-0-UI.s1 /CLONE=UI-R-DZ0-ckm-f-05-0-UI /FEA=EST /CNT=27 /TID=Rn.8642.1 /TIER=Stack /STK=7 /UG=Rn.8642 /UG_TITLE=ESTs, Highly similar to T46333 hypothetical protein DKFZp434J1813.1 (H.sapiens) BM388610 DnaJ (Hsp40) homolog, subfamily C, member 10 Dnajc10 295690 NM_001106486 0006457 // protein folding // inferred from electronic annotation /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1373814_at BI291270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291270 /DB_XREF=gi:14950655 /DB_XREF=UI-R-CV2-cgn-e-09-0-UI.s1 /CLONE=UI-R-CV2-cgn-e-09-0-UI /FEA=EST /CNT=21 /TID=Rn.22359.1 /TIER=Stack /STK=7 /UG=Rn.22359 /UG_TITLE=ESTs BI291270 R3H domain containing 2 R3hdm2 362894 NM_001130557 0003676 // nucleic acid binding // inferred from electronic annotation 1373815_at BI304064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI304064 /DB_XREF=gi:14980344 /DB_XREF=UI-R-DR0-cjc-o-02-0-UI.s1 /CLONE=UI-R-DR0-cjc-o-02-0-UI /FEA=EST /CNT=21 /TID=Rn.3863.1 /TIER=Stack /STK=7 /UG=Rn.3863 /UG_TITLE=ESTs, Weakly similar to p58 (R.norvegicus) BI304064 lectin, mannose-binding 2 Lman2 290994 NM_001115024 0005793 // ER-Golgi intermediate compartment // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0016020 // membrane // inferred from electronic annotation 1373816_at BM383443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383443 /DB_XREF=gi:18183496 /DB_XREF=UI-R-DM1-ckb-l-08-0-UI.s1 /CLONE=UI-R-DM1-ckb-l-08-0-UI /FEA=EST /CNT=19 /TID=Rn.9446.1 /TIER=Stack /STK=7 /UG=Rn.9446 /UG_TITLE=ESTs BM383443 adaptor-related protein complex 1, gamma 1 subunit Ap1g1 171494 NM_134460 0000226 // microtubule cytoskeleton organization // inferred from direct assay /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // not recorded /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0044431 // Golgi apparatus part // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005518 // collagen binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008565 // protein transporter activity // inferred from electronic annotation 1373817_at BM391761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391761 /DB_XREF=gi:18191814 /DB_XREF=UI-R-DO1-cmk-c-03-0-UI.s1 /CLONE=UI-R-DO1-cmk-c-03-0-UI /FEA=EST /CNT=19 /TID=Rn.4082.1 /TIER=Stack /STK=7 /UG=Rn.4082 /UG_TITLE=ESTs, Weakly similar to PHD-finger. (Caenorhabditis elegans) (C.elegans) BM391761 inhibitor of growth family, member 4 Ing4 297597 NM_001079887 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded /// 0006473 // protein acetylation // inferred from electronic annotation /// 0006473 // protein acetylation // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006978 // DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator // inferred from electronic annotation /// 0006978 // DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator // not recorded /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0043966 // histone H3 acetylation // not recorded /// 0043981 // histone H4-K5 acetylation // inferred from electronic annotation /// 0043981 // histone H4-K5 acetylation // not recorded /// 0043982 // histone H4-K8 acetylation // inferred from electronic annotation /// 0043982 // histone H4-K8 acetylation // not recorded /// 0043983 // histone H4-K12 acetylation // inferred from electronic annotation /// 0043983 // histone H4-K12 acetylation // not recorded /// 0043984 // histone H4-K16 acetylation // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045926 // negative regulation of growth // inferred from electronic annotation /// 0045926 // negative regulation of growth // not recorded 0000123 // histone acetyltransferase complex // inferred from electronic annotation /// 0000123 // histone acetyltransferase complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373818_at AI408351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408351 /DB_XREF=gi:4251855 /DB_XREF=EST236641 /CLONE=ROVES13 /FEA=EST /CNT=25 /TID=Rn.13832.1 /TIER=Stack /STK=7 /UG=Rn.13832 /UG_TITLE=ESTs AI408351 1373819_at AI232337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232337 /DB_XREF=gi:3816217 /DB_XREF=EST229025 /CLONE=RKICA39 /FEA=EST /CNT=22 /TID=Rn.3164.1 /TIER=Stack /STK=7 /UG=Rn.3164 /UG_TITLE=ESTs AI232337 1373820_at AI179107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179107 /DB_XREF=gi:3729745 /DB_XREF=EST222791 /CLONE=RSPCB86 /FEA=EST /CNT=20 /TID=Rn.8617.1 /TIER=Stack /STK=7 /UG=Rn.8617 /UG_TITLE=ESTs, Weakly similar to COP1 protein (M.musculus) AI179107 ring finger and WD repeat domain 2 Rfwd2 360860 NM_001025126 0000139 // Golgi membrane // inferred from direct assay 1373821_at BF418332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418332 /DB_XREF=gi:11406321 /DB_XREF=UI-R-CA0-bmd-g-12-0-UI.s1 /CLONE=UI-R-CA0-bmd-g-12-0-UI /FEA=EST /CNT=15 /TID=Rn.16711.1 /TIER=Stack /STK=7 /UG=Rn.16711 /UG_TITLE=ESTs BF418332 solute carrier family 30 (zinc transporter), member 5 Slc30a5 294698 NM_001106404 0006812 // cation transport // inferred from electronic annotation /// 0006824 // cobalt ion transport // not recorded /// 0006829 // zinc ion transport // not recorded /// 0006882 // cellular zinc ion homeostasis // not recorded /// 0010043 // response to zinc ion // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0030141 // stored secretory granule // not recorded /// 0030667 // secretory granule membrane // not recorded 0005385 // zinc ion transmembrane transporter activity // not recorded /// 0008324 // cation transmembrane transporter activity // inferred from electronic annotation 1373822_at BI275708 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275708 /DB_XREF=gi:14919887 /DB_XREF=UI-R-CW0-bwm-g-04-0-UI.s1 /CLONE=UI-R-CW0-bwm-g-04-0-UI /FEA=EST /CNT=15 /TID=Rn.12880.1 /TIER=Stack /STK=7 /UG=Rn.12880 /UG_TITLE=ESTs, Weakly similar to YCE3_HUMAN HYPOTHETICAL PROTEIN CGI-143 (H.sapiens) BI275708 similar to RIKEN cDNA 1110025L05 RGD1565363 502367 XM_001079962 /// XM_002728805 1373823_at AA944180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944180 /DB_XREF=gi:3104096 /DB_XREF=EST199679 /CLONE=REMAD35 /FEA=EST /CNT=15 /TID=Rn.6116.1 /TIER=Stack /STK=7 /UG=Rn.6116 /UG_TITLE=ESTs, Highly similar to CKS2 MOUSE CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT 2 (M.musculus) AA944180 CDC28 protein kinase regulatory subunit 2 Cks2 498709 NM_001126083 0007049 // cell cycle // inferred from electronic annotation /// 0007127 // meiosis I // not recorded 0016301 // kinase activity // inferred from electronic annotation /// 0016538 // cyclin-dependent protein kinase regulator activity // inferred from electronic annotation 1373824_at AW433973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433973 /DB_XREF=gi:6965280 /DB_XREF=UI-R-BJ0p-afn-g-06-0-UI.s1 /CLONE=UI-R-BJ0p-afn-g-06-0-UI /FEA=EST /CNT=15 /TID=Rn.8169.1 /TIER=Stack /STK=7 /UG=Rn.8169 /UG_TITLE=ESTs, Weakly similar to T21999 hypothetical protein F39H11.1 - Caenorhabditis elegans (C.elegans) AW433973 craniofacial development protein 1 Cfdp1 292027 NM_199378 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded 1373825_at BG373078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373078 /DB_XREF=gi:13269615 /DB_XREF=UI-R-CV1-bsf-c-04-0-UI.s1 /CLONE=UI-R-CV1-bsf-c-04-0-UI /FEA=EST /CNT=15 /TID=Rn.25441.1 /TIER=Stack /STK=7 /UG=Rn.25441 /UG_TITLE=ESTs BG373078 SCY1-like 2 (S. cerevisiae) Scyl2 314717 NM_001191780 /// XM_001076749 /// XM_235050 0006468 // protein phosphorylation // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1373826_at AI170754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170754 /DB_XREF=gi:4134539 /DB_XREF=EST216693 /CLONE=RMUBB06 /FEA=EST /CNT=14 /TID=Rn.1136.2 /TIER=Stack /STK=7 /UG=Rn.1136 /UG_TITLE=ESTs, Highly similar to T50836 Yippee protein (H.sapiens) AI170754 yippee-like 5 (Drosophila) Ypel5 298792 NM_001035221 0055114 // oxidation reduction // inferred from electronic annotation 0008113 // peptide-methionine-(S)-S-oxide reductase activity // inferred from electronic annotation 1373827_at AI179972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179972 /DB_XREF=gi:3730610 /DB_XREF=EST223703 /CLONE=RSPCO37 /FEA=EST /CNT=14 /TID=Rn.31448.1 /TIER=Stack /STK=7 /UG=Rn.31448 /UG_TITLE=ESTs, Weakly similar to 2018190A placental lactogen (R.norvegicus) AI179972 prolactin family 7, subfamily a, member 4 Prl7a4 306929 NM_001008341 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation 1373828_at AI412614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412614 /DB_XREF=gi:4256118 /DB_XREF=EST240913 /CLONE=RBRDK51 /FEA=EST /CNT=14 /TID=Rn.13599.1 /TIER=Stack /STK=7 /UG=Rn.13599 /UG_TITLE=ESTs AI412614 CREB regulated transcription coactivator 2 Crtc2 310615 NM_001033895 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373829_at AI412658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412658 /DB_XREF=gi:4256162 /DB_XREF=EST240957 /CLONE=RBRDK83 /FEA=EST /CNT=14 /TID=Rn.9186.1 /TIER=Stack /STK=7 /UG=Rn.9186 /UG_TITLE=ESTs, Highly similar to S51635 fibroblast growth factor receptor 2b, keratinocyte growth factor receptor - rat (R.norvegicus) AI412658 fibroblast growth factor receptor 2 Fgfr2 25022 NM_001109892 /// NM_001109893 /// NM_001109894 /// NM_001109895 /// NM_001109896 /// NM_012712 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001837 // epithelial to mesenchymal transition // inferred from direct assay /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0003148 // outflow tract septum morphogenesis // not recorded /// 0003148 // outflow tract septum morphogenesis // inferred from electronic annotation /// 0003149 // membranous septum morphogenesis // not recorded /// 0003149 // membranous septum morphogenesis // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from mutant phenotype /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0008589 // regulation of smoothened signaling pathway // not recorded /// 0008589 // regulation of smoothened signaling pathway // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009880 // embryonic pattern specification // not recorded /// 0009880 // embryonic pattern specification // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010453 // regulation of cell fate commitment // not recorded /// 0010453 // regulation of cell fate commitment // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // not recorded /// 0016331 // morphogenesis of embryonic epithelium // inferred from electronic annotation /// 0022612 // gland morphogenesis // not recorded /// 0022612 // gland morphogenesis // inferred from electronic annotation /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0030177 // positive regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030282 // bone mineralization // not recorded /// 0030282 // bone mineralization // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030901 // midbrain development // not recorded /// 0030901 // midbrain development // inferred from electronic annotation /// 0030916 // otic vesicle formation // not recorded /// 0030916 // otic vesicle formation // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // not recorded /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0032808 // lacrimal gland development // not recorded /// 0032808 // lacrimal gland development // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035265 // organ growth // not recorded /// 0035265 // organ growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040036 // regulation of fibroblast growth factor receptor signaling pathway // not recorded /// 0040036 // regulation of fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042476 // odontogenesis // not recorded /// 0042476 // odontogenesis // inferred from electronic annotation /// 0045165 // cell fate commitment // not recorded /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0048286 // lung alveolus development // not recorded /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048333 // mesodermal cell differentiation // inferred from expression pattern /// 0048557 // embryonic digestive tract morphogenesis // not recorded /// 0048557 // embryonic digestive tract morphogenesis // inferred from electronic annotation /// 0048562 // embryonic organ morphogenesis // not recorded /// 0048562 // embryonic organ morphogenesis // inferred from electronic annotation /// 0048565 // digestive tract development // not recorded /// 0048565 // digestive tract development // inferred from electronic annotation /// 0048568 // embryonic organ development // not recorded /// 0048568 // embryonic organ development // inferred from electronic annotation /// 0048608 // reproductive structure development // not recorded /// 0048608 // reproductive structure development // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0048730 // epidermis morphogenesis // not recorded /// 0048730 // epidermis morphogenesis // inferred from electronic annotation /// 0048755 // branching morphogenesis of a nerve // not recorded /// 0048755 // branching morphogenesis of a nerve // inferred from electronic annotation /// 0048762 // mesenchymal cell differentiation // not recorded /// 0048762 // mesenchymal cell differentiation // inferred from electronic annotation /// 0050673 // epithelial cell proliferation // not recorded /// 0050673 // epithelial cell proliferation // inferred from electronic annotation /// 0050678 // regulation of epithelial cell proliferation // not recorded /// 0050678 // regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // inferred from direct assay /// 0051150 // regulation of smooth muscle cell differentiation // not recorded /// 0051150 // regulation of smooth muscle cell differentiation // inferred from electronic annotation /// 0051781 // positive regulation of cell division // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0060045 // positive regulation of cardiac muscle cell proliferation // not recorded /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060174 // limb bud formation // not recorded /// 0060174 // limb bud formation // inferred from electronic annotation /// 0060348 // bone development // not recorded /// 0060348 // bone development // inferred from electronic annotation /// 0060349 // bone morphogenesis // not recorded /// 0060349 // bone morphogenesis // inferred from electronic annotation /// 0060442 // branching involved in prostate gland morphogenesis // not recorded /// 0060442 // branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // not recorded /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060449 // bud elongation involved in lung branching // not recorded /// 0060449 // bud elongation involved in lung branching // inferred from electronic annotation /// 0060463 // lung lobe morphogenesis // not recorded /// 0060463 // lung lobe morphogenesis // inferred from electronic annotation /// 0060484 // lung-associated mesenchyme development // not recorded /// 0060484 // lung-associated mesenchyme development // inferred from electronic annotation /// 0060501 // positive regulation of epithelial cell proliferation involved in lung morphogenesis // not recorded /// 0060501 // positive regulation of epithelial cell proliferation involved in lung morphogenesis // inferred from electronic annotation /// 0060512 // prostate gland morphogenesis // not recorded /// 0060512 // prostate gland morphogenesis // inferred from electronic annotation /// 0060523 // prostate epithelial cord elongation // not recorded /// 0060523 // prostate epithelial cord elongation // inferred from electronic annotation /// 0060527 // prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis // not recorded /// 0060527 // prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis // inferred from electronic annotation /// 0060529 // squamous basal epithelial stem cell differentiation involved in prostate gland acinus development // not recorded /// 0060529 // squamous basal epithelial stem cell differentiation involved in prostate gland acinus development // inferred from electronic annotation /// 0060595 // fibroblast growth factor receptor signaling pathway involved in mammary gland specification // not recorded /// 0060595 // fibroblast growth factor receptor signaling pathway involved in mammary gland specification // inferred from electronic annotation /// 0060601 // lateral sprouting from an epithelium // not recorded /// 0060601 // lateral sprouting from an epithelium // inferred from electronic annotation /// 0060615 // mammary gland bud formation // not recorded /// 0060615 // mammary gland bud formation // inferred from electronic annotation /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // not recorded /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060667 // branch elongation involved in salivary gland morphogenesis // not recorded /// 0060667 // branch elongation involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060670 // branching involved in embryonic placenta morphogenesis // not recorded /// 0060670 // branching involved in embryonic placenta morphogenesis // inferred from electronic annotation /// 0060687 // regulation of branching involved in prostate gland morphogenesis // not recorded /// 0060687 // regulation of branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0060688 // regulation of morphogenesis of a branching structure // not recorded /// 0060688 // regulation of morphogenesis of a branching structure // inferred from electronic annotation /// 0060915 // mesenchymal cell differentiation involved in lung development // not recorded /// 0060915 // mesenchymal cell differentiation involved in lung development // inferred from electronic annotation /// 0060916 // mesenchymal cell proliferation involved in lung development // not recorded /// 0060916 // mesenchymal cell proliferation involved in lung development // inferred from electronic annotation /// 0070372 // regulation of ERK1 and ERK2 cascade // not recorded /// 0070372 // regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0071445 // cellular response to protein stimulus // not recorded /// 0071445 // cellular response to protein stimulus // inferred from electronic annotation /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0005938 // cell cortex // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005007 // fibroblast growth factor receptor activity // inferred from electronic annotation /// 0005007 // fibroblast growth factor receptor activity // inferred from physical interaction /// 0005007 // fibroblast growth factor receptor activity // not recorded /// 0005007 // fibroblast growth factor receptor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // inferred from physical interaction /// 0017134 // fibroblast growth factor binding // not recorded /// 0017134 // fibroblast growth factor binding // inferred from electronic annotation /// 0048602 // fibroblast growth factor 1 binding // inferred from physical interaction 1373830_at AA893539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893539 /DB_XREF=gi:3020418 /DB_XREF=EST197342 /CLONE=RLIAD67 /FEA=EST /CNT=22 /TID=Rn.4179.1 /TIER=Stack /STK=7 /UG=Rn.4179 /UG_TITLE=ESTs AA893539 hypothetical protein LOC619574 LOC619574 619574 NM_001034959 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1373831_at AW920524 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920524 /DB_XREF=gi:8086335 /DB_XREF=EST351828 /CLONE=RGIGY14 /FEA=EST /CNT=22 /TID=Rn.4179.1 /TIER=Stack /STK=6 /UG=Rn.4179 /UG_TITLE=ESTs AW920524 hypothetical protein LOC619574 LOC619574 619574 NM_001034959 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1373832_at AI009949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009949 /DB_XREF=gi:3223781 /DB_XREF=EST204400 /CLONE=RLUBR22 /FEA=EST /CNT=18 /TID=Rn.8862.1 /TIER=Stack /STK=7 /UG=Rn.8862 /UG_TITLE=ESTs, Moderately similar to Y254_HUMAN HYPOTHETICAL PROTEIN KIAA0254 (H.sapiens) AI009949 sorting nexin 19 Snx19 315478 NM_001108131 0007154 // cell communication // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1373833_at BI288945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288945 /DB_XREF=gi:14946015 /DB_XREF=UI-R-DK0-cdi-d-11-0-UI.s1 /CLONE=UI-R-DK0-cdi-d-11-0-UI /FEA=EST /CNT=16 /TID=Rn.16913.1 /TIER=Stack /STK=7 /UG=Rn.16913 /UG_TITLE=ESTs BI288945 similar to RIKEN cDNA 3110040N11 RGD1305713 293059 NM_001024749 1373834_at AI233983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233983 /DB_XREF=gi:3817863 /DB_XREF=EST230671 /CLONE=RLUCT72 /FEA=EST /CNT=16 /TID=Rn.13060.1 /TIER=Stack /STK=7 /UG=Rn.13060 /UG_TITLE=ESTs, Weakly similar to K11B4.2.p (Caenorhabditis elegans) (C.elegans) AI233983 similar to K11B4.2 LOC688966 688966 NM_001145726 1373835_at AI009785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009785 /DB_XREF=gi:3223617 /DB_XREF=EST204236 /CLONE=RLUBO42 /FEA=EST /CNT=15 /TID=Rn.7607.1 /TIER=Stack /STK=7 /UG=Rn.7607 /UG_TITLE=ESTs, Highly similar to FBS_HUMAN F-boxSEC7 protein FBS (H.sapiens) AI009785 F-box protein 8 Fbxo8 306436 NM_001012050 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0032012 // regulation of ARF protein signal transduction // inferred from electronic annotation 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0000151 // ubiquitin ligase complex // not recorded /// 0005622 // intracellular // inferred from electronic annotation 0005086 // ARF guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1373836_at AI236582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236582 /DB_XREF=gi:3830088 /DB_XREF=EST233144 /CLONE=ROVDH95 /FEA=EST /CNT=15 /TID=Rn.13677.1 /TIER=Stack /STK=7 /UG=Rn.13677 /UG_TITLE=ESTs AI236582 forty-two-three domain containing 1 Fyttd1 360726 NM_001047899 0006406 // mRNA export from nucleus // not recorded /// 0006406 // mRNA export from nucleus // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005654 // nucleoplasm // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded /// 0016607 // nuclear speck // inferred from sequence or structural similarity /// 0016607 // nuclear speck // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0003729 // mRNA binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded 1373837_at BI296633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296633 /DB_XREF=gi:14961250 /DB_XREF=UI-R-CV2-cgt-e-06-0-UI.s1 /CLONE=UI-R-CV2-cgt-e-06-0-UI /FEA=EST /CNT=14 /TID=Rn.11020.2 /TIER=Stack /STK=7 /UG=Rn.11020 /LL=81758 /UG_GENE=Rb2 /UG_TITLE=Retinoblastoma-related gene BI296633 AKT interacting protein Aktip 291906 NM_001011926 0001934 // positive regulation of protein phosphorylation // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0007032 // endosome organization // not recorded /// 0007032 // endosome organization // inferred from sequence or structural similarity /// 0007040 // lysosome organization // not recorded /// 0007040 // lysosome organization // inferred from sequence or structural similarity /// 0008333 // endosome to lysosome transport // not recorded /// 0008333 // endosome to lysosome transport // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0032092 // positive regulation of protein binding // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0045022 // early endosome to late endosome transport // not recorded /// 0045022 // early endosome to late endosome transport // inferred from sequence or structural similarity /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030897 // HOPS complex // not recorded /// 0070695 // FHF complex // not recorded /// 0070695 // FHF complex // inferred from sequence or structural similarity 0005515 // protein binding // not recorded /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1373838_at AI237192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237192 /DB_XREF=gi:3830698 /DB_XREF=EST233754 /CLONE=ROVDP74 /FEA=EST /CNT=14 /TID=Rn.37309.1 /TIER=Stack /STK=7 /UG=Rn.37309 /UG_TITLE=ESTs AI237192 fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific) Fut4 60670 NM_022219 0006486 // protein glycosylation // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0008417 // fucosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046920 // alpha(1,3)-fucosyltransferase activity // inferred from direct assay 1373839_at BG372386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372386 /DB_XREF=gi:13268923 /DB_XREF=UI-R-CV1-bsc-b-07-0-UI.s1 /CLONE=UI-R-CV1-bsc-b-07-0-UI /FEA=EST /CNT=13 /TID=Rn.7944.1 /TIER=Stack /STK=7 /UG=Rn.7944 /UG_TITLE=ESTs BG372386 1373840_at BM384191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384191 /DB_XREF=gi:18184244 /DB_XREF=UI-R-DZ0-cks-j-18-0-UI.s1 /CLONE=UI-R-DZ0-cks-j-18-0-UI /FEA=EST /CNT=13 /TID=Rn.22103.1 /TIER=Stack /STK=7 /UG=Rn.22103 /UG_TITLE=ESTs, Weakly similar to TRP7_HUMAN TRANSIENT RECEPTOR POTENTIAL CHANNEL 7 (H.sapiens) BM384191 nudix (nucleoside diphosphate linked moiety X)-type motif 9 Nudt9 305149 NM_001006991 0046032 // ADP catabolic process // inferred from electronic annotation /// 0046032 // ADP catabolic process // not recorded /// 0046709 // IDP catabolic process // inferred from electronic annotation /// 0046709 // IDP catabolic process // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0016787 // hydrolase activity // inferred from electronic annotation /// 0017110 // nucleoside-diphosphatase activity // inferred from electronic annotation /// 0017110 // nucleoside-diphosphatase activity // not recorded /// 0047631 // ADP-ribose diphosphatase activity // inferred from electronic annotation 1373841_at AI177431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177431 /DB_XREF=gi:3728069 /DB_XREF=EST221054 /CLONE=RPLBZ23 /FEA=EST /CNT=13 /TID=Rn.3700.1 /TIER=Stack /STK=7 /UG=Rn.3700 /UG_TITLE=ESTs AI177431 1373842_at BM390718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390718 /DB_XREF=gi:18190771 /DB_XREF=UI-R-CN1-cjr-f-03-0-UI.s1 /CLONE=UI-R-CN1-cjr-f-03-0-UI /FEA=EST /CNT=13 /TID=Rn.4020.1 /TIER=Stack /STK=7 /UG=Rn.4020 /UG_TITLE=ESTs BM390718 Wiskott-Aldrich syndrome-like Wasl 682507 NM_001110365 0006461 // protein complex assembly // inferred from electronic annotation /// 0008154 // actin polymerization or depolymerization // inferred from electronic annotation /// 0009617 // response to bacterium // inferred from electronic annotation /// 0009617 // response to bacterium // not recorded /// 0030031 // cell projection assembly // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0000139 // Golgi membrane // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373843_at BE107419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107419 /DB_XREF=gi:8499524 /DB_XREF=UI-R-BS1-ayt-e-04-0-UI.s1 /CLONE=UI-R-BS1-ayt-e-04-0-UI /FEA=EST /CNT=13 /TID=Rn.15696.1 /TIER=Stack /STK=7 /UG=Rn.15696 /UG_TITLE=ESTs BE107419 1373844_at BE103921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103921 /DB_XREF=gi:8496021 /DB_XREF=UI-R-BX0-arj-d-11-0-UI.s1 /CLONE=UI-R-BX0-arj-d-11-0-UI /FEA=EST /CNT=15 /TID=Rn.7638.1 /TIER=Stack /STK=7 /UG=Rn.7638 /UG_TITLE=ESTs, Weakly similar to S46814 ribosomal protein YmS2, mitochondrial - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BE103921 protein phosphatase methylesterase 1 Ppme1 361613 NM_001191838 /// XM_001066863 /// XM_341891 0006482 // protein demethylation // inferred from electronic annotation /// 0006482 // protein demethylation // not recorded 0019903 // protein phosphatase binding // not recorded /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0051721 // protein phosphatase 2A binding // inferred from electronic annotation /// 0051721 // protein phosphatase 2A binding // not recorded /// 0051722 // protein C-terminal methylesterase activity // inferred from electronic annotation /// 0051722 // protein C-terminal methylesterase activity // not recorded 1373845_at AA944773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944773 /DB_XREF=gi:3104689 /DB_XREF=EST200272 /CLONE=REMAO94 /FEA=EST /CNT=15 /TID=Rn.24943.1 /TIER=Stack /STK=7 /UG=Rn.24943 /UG_TITLE=ESTs, Moderately similar to T14789 hypothetical protein DKFZp586L0724.1 (H.sapiens) AA944773 similar to Nucleolar protein 11 LOC688235 688235 XM_001081609 0005634 // nucleus // inferred from electronic annotation 1373846_at BF408064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408064 /DB_XREF=gi:11396039 /DB_XREF=UI-R-BJ2-bqz-c-09-0-UI.s1 /CLONE=UI-R-BJ2-bqz-c-09-0-UI /FEA=EST /CNT=14 /TID=Rn.3613.1 /TIER=Stack /STK=7 /UG=Rn.3613 /UG_TITLE=ESTs, Moderately similar to BTF3 MOUSE TRANSCRIPTION FACTOR BTF3 (M.musculus) BF408064 1373847_at AW435343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435343 /DB_XREF=gi:6966650 /DB_XREF=UI-R-BJ0p-afc-d-09-0-UI.s1 /CLONE=UI-R-BJ0p-afc-d-09-0-UI /FEA=EST /CNT=14 /TID=Rn.2884.1 /TIER=Stack /STK=7 /UG=Rn.2884 /UG_TITLE=ESTs, Highly similar to T4S1_MOUSE Transmembrane 4 superfamily, member 1 (Tumor-associated antigen L6) (Membrane component, surface marker 1) (M3S1) (M.musculus) AW435343 transmembrane 4 L six family member 1 Tm4sf1 295061 NM_001106434 0005887 // integral to plasma membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 1373848_at BM388575 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388575 /DB_XREF=gi:18188628 /DB_XREF=UI-R-DZ0-ckm-m-08-0-UI.s1 /CLONE=UI-R-DZ0-ckm-m-08-0-UI /FEA=EST /CNT=13 /TID=Rn.16131.1 /TIER=Stack /STK=7 /UG=Rn.16131 /UG_TITLE=ESTs, Moderately similar to ORC5_MOUSE Origin recognition complex subunit 5 (M.musculus) BM388575 tRNA splicing endonuclease 15 homolog (S. cerevisiae) Tsen15 289083 NM_001105958 0005515 // protein binding // not recorded 1373849_at AI102978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102978 /DB_XREF=gi:3707605 /DB_XREF=EST212267 /CLONE=REMBV69 /FEA=EST /CNT=13 /TID=Rn.19104.1 /TIER=Stack /STK=7 /UG=Rn.19104 /UG_TITLE=ESTs, Weakly similar to ACTB_HUMAN ACTIN, CYTOPLASMIC 1 (R.norvegicus) AI102978 actin-like 6A Actl6a 361925 NM_001039033 0006338 // chromatin remodeling // not recorded /// 0043967 // histone H4 acetylation // not recorded /// 0043968 // histone H2A acetylation // not recorded 0005634 // nucleus // not recorded /// 0005886 // plasma membrane // not recorded /// 0016514 // SWI/SNF complex // not recorded /// 0016585 // chromatin remodeling complex // not recorded /// 0035267 // NuA4 histone acetyltransferase complex // not recorded 0003682 // chromatin binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1373850_at AW251315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251315 /DB_XREF=gi:6594906 /DB_XREF=UI-R-BJ0-adg-g-02-0-UI.s1 /CLONE=UI-R-BJ0-adg-g-02-0-UI /FEA=EST /CNT=13 /TID=Rn.12679.1 /TIER=Stack /STK=7 /UG=Rn.12679 /UG_TITLE=ESTs, Weakly similar to S27393 sphingomyelin phosphodiesterase (EC 3.1.4.12), acidic, splice form 1 precursor - mouse (M.musculus) AW251315 sphingomyelin phosphodiesterase, acid-like 3B Smpdl3b 362619 NM_001025737 0006685 // sphingomyelin catabolic process // inferred from electronic annotation 0005615 // extracellular space // inferred from electronic annotation 0004767 // sphingomyelin phosphodiesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1373851_at AI171998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171998 /DB_XREF=gi:3712038 /DB_XREF=EST217993 /CLONE=RMUBT67 /FEA=EST /CNT=13 /TID=Rn.17213.1 /TIER=Stack /STK=7 /UG=Rn.17213 /UG_TITLE=ESTs AI171998 1373852_at AA859922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859922 /DB_XREF=gi:4230458 /DB_XREF=UI-R-E0-cg-c-04-0-UI.s1 /CLONE=UI-R-E0-cg-c-04-0-UI /FEA=EST /CNT=13 /TID=Rn.819.1 /TIER=Stack /STK=7 /UG=Rn.819 /UG_TITLE=ESTs AA859922 steroid 5 alpha-reductase 3 Srd5a3 305291 NM_001013990 0006488 // dolichol-linked oligosaccharide biosynthetic process // not recorded /// 0006488 // dolichol-linked oligosaccharide biosynthetic process // inferred from sequence or structural similarity /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0016095 // polyprenol catabolic process // not recorded /// 0016095 // polyprenol catabolic process // inferred from sequence or structural similarity /// 0019348 // dolichol metabolic process // not recorded /// 0019348 // dolichol metabolic process // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003865 // 3-oxo-5-alpha-steroid 4-dehydrogenase activity // not recorded /// 0003865 // 3-oxo-5-alpha-steroid 4-dehydrogenase activity // inferred from sequence or structural similarity /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation /// 0016628 // oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor // not recorded /// 0016628 // oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor // inferred from sequence or structural similarity 1373853_at AI705797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI705797 /DB_XREF=gi:4993697 /DB_XREF=UI-R-AD1-zq-h-12-0-UI.s1 /CLONE=UI-R-AD1-zq-h-12-0-UI /FEA=EST /CNT=12 /TID=Rn.32868.1 /TIER=Stack /STK=7 /UG=Rn.32868 /UG_TITLE=ESTs AI705797 zinc finger protein 414 Zfp414 299647 NM_001009664 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373854_at AI175795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175795 /DB_XREF=gi:3726433 /DB_XREF=EST219365 /CLONE=ROVBF52 /FEA=EST /CNT=12 /TID=Rn.3583.1 /TIER=Stack /STK=7 /UG=Rn.3583 /UG_TITLE=ESTs AI175795 1373855_at AI171776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171776 /DB_XREF=gi:4134658 /DB_XREF=EST217758 /CLONE=RMUBQ56 /FEA=EST /CNT=12 /TID=Rn.12498.1 /TIER=Stack /STK=7 /UG=Rn.12498 /UG_TITLE=ESTs AI171776 1373856_at AI104303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104303 /DB_XREF=gi:3708677 /DB_XREF=EST213592 /CLONE=RHECA04 /FEA=EST /CNT=12 /TID=Rn.22347.1 /TIER=Stack /STK=7 /UG=Rn.22347 /UG_TITLE=ESTs AI104303 hypothetical LOC314467 RGD1305627 314467 NM_001134560 1373857_at BM387116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387116 /DB_XREF=gi:18187169 /DB_XREF=UI-R-CN1-cji-o-20-0-UI.s1 /CLONE=UI-R-CN1-cji-o-20-0-UI /FEA=EST /CNT=12 /TID=Rn.3837.1 /TIER=Stack /STK=7 /UG=Rn.3837 /UG_TITLE=ESTs BM387116 1373858_at BE109064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109064 /DB_XREF=gi:8501169 /DB_XREF=UI-R-BS1-azc-e-10-0-UI.s1 /CLONE=UI-R-BS1-azc-e-10-0-UI /FEA=EST /CNT=12 /TID=Rn.3195.1 /TIER=Stack /STK=7 /UG=Rn.3195 /UG_TITLE=ESTs BE109064 1373859_at AA819884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819884 /DB_XREF=gi:4228136 /DB_XREF=UI-R-A0-aq-b-08-0-UI.s1 /CLONE=UI-R-A0-aq-b-08-0-UI /FEA=EST /CNT=12 /TID=Rn.2285.1 /TIER=Stack /STK=7 /UG=Rn.2285 /UG_TITLE=ESTs AA819884 1373860_at BI297183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297183 /DB_XREF=gi:14962329 /DB_XREF=UI-R-DK0-cgc-d-08-0-UI.s1 /CLONE=UI-R-DK0-cgc-d-08-0-UI /FEA=EST /CNT=12 /TID=Rn.15099.1 /TIER=Stack /STK=7 /UG=Rn.15099 /UG_TITLE=ESTs, Highly similar to S37303 sox-4 protein - mouse (M.musculus) BI297183 SRY (sex determining region Y)-box 4 Sox4 364712 XM_001068302 /// XM_344594 0001666 // response to hypoxia // inferred from direct assay /// 0002328 // pro-B cell differentiation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007507 // heart development // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0030217 // T cell differentiation // not recorded /// 0031017 // exocrine pancreas development // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0050821 // protein stabilization // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded 1373861_at AI228114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228114 /DB_XREF=gi:3812001 /DB_XREF=EST224809 /CLONE=RBRCQ46 /FEA=EST /CNT=12 /TID=Rn.6852.1 /TIER=Stack /STK=7 /UG=Rn.6852 /UG_TITLE=ESTs AI228114 Nedd4 family interacting protein 2 Ndfip2 361089 NM_001108390 0010629 // negative regulation of gene expression // not recorded /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0032410 // negative regulation of transporter activity // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0051224 // negative regulation of protein transport // not recorded 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0004871 // signal transducer activity // not recorded /// 0005515 // protein binding // not recorded /// 0050699 // WW domain binding // not recorded 1373862_at AI009673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009673 /DB_XREF=gi:4133090 /DB_XREF=EST204124 /CLONE=RLUBN11 /FEA=EST /CNT=12 /TID=Rn.8688.1 /TIER=Stack /STK=7 /UG=Rn.8688 /UG_TITLE=ESTs AI009673 transmembrane emp24 protein transport domain containing 7 Tmed7 252889 NM_001105758 0006810 // transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1373863_at BF398680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398680 /DB_XREF=gi:11383677 /DB_XREF=UI-R-BS2-ber-f-04-0-UI.s1 /CLONE=UI-R-BS2-ber-f-04-0-UI /FEA=EST /CNT=28 /TID=Rn.37874.1 /TIER=Stack /STK=7 /UG=Rn.37874 /UG_TITLE=ESTs, Highly similar to mitogen-activated protein kinase kinase kinase kinase 4; NCK interacting kinase; HPKGCK-like kinase (Mus musculus) (M.musculus) BF398680 mitogen-activated protein kinase kinase kinase kinase 4 Map4k4 301363 NM_001106904 0006468 // protein phosphorylation // inferred from electronic annotation 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1373864_at BM388810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388810 /DB_XREF=gi:18188863 /DB_XREF=UI-R-DZ0-ckn-o-01-0-UI.s1 /CLONE=UI-R-DZ0-ckn-o-01-0-UI /FEA=EST /CNT=28 /TID=Rn.37874.1 /TIER=Stack /STK=6 /UG=Rn.37874 /UG_TITLE=ESTs, Highly similar to mitogen-activated protein kinase kinase kinase kinase 4; NCK interacting kinase; HPKGCK-like kinase (Mus musculus) (M.musculus) BM388810 mitogen-activated protein kinase kinase kinase kinase 4 Map4k4 301363 NM_001106904 0006468 // protein phosphorylation // inferred from electronic annotation 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1373865_at BF281248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281248 /DB_XREF=gi:11212234 /DB_XREF=EST445755 /CLONE=RGIAA82 /FEA=EST /CNT=20 /TID=Rn.11022.3 /TIER=Stack /STK=7 /UG=Rn.11022 /LL=65178 /UG_GENE=Snap91 /UG_TITLE=synaptosomal-associated protein, 91 kDa BF281248 synaptosomal-associated protein 91 Snap91 65178 NM_031728 0007163 // establishment or maintenance of cell polarity // inferred from mutant phenotype /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // not recorded /// 0007409 // axonogenesis // inferred from mutant phenotype /// 0030100 // regulation of endocytosis // inferred from mutant phenotype /// 0048268 // clathrin coat assembly // inferred from electronic annotation /// 0048268 // clathrin coat assembly // not recorded /// 0051223 // regulation of protein transport // inferred from mutant phenotype 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030118 // clathrin coat // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from direct assay 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005545 // phosphatidylinositol binding // inferred from electronic annotation /// 0005545 // phosphatidylinositol binding // not recorded /// 0030276 // clathrin binding // inferred from electronic annotation /// 0032050 // clathrin heavy chain binding // inferred from electronic annotation /// 0032050 // clathrin heavy chain binding // not recorded 1373866_at AI228596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228596 /DB_XREF=gi:4135366 /DB_XREF=EST225291 /CLONE=RBRCW92 /FEA=EST /CNT=18 /TID=Rn.3143.1 /TIER=Stack /STK=7 /UG=Rn.3143 /UG_TITLE=ESTs, Weakly similar to T16757 hypothetical protein R144.3 - Caenorhabditis elegans (C.elegans) AI228596 coenzyme Q10 homolog B (S. cerevisiae) Coq10b 301416 NM_001009671 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1373867_at BI289360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289360 /DB_XREF=gi:14946842 /DB_XREF=UI-R-DK0-cfg-a-07-0-UI.s1 /CLONE=UI-R-DK0-cfg-a-07-0-UI /FEA=EST /CNT=15 /TID=Rn.17403.1 /TIER=Stack /STK=7 /UG=Rn.17403 /UG_TITLE=ESTs BI289360 1373868_at AI717547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717547 /DB_XREF=gi:5034803 /DB_XREF=UI-R-Y0-acp-e-11-0-UI.s1 /CLONE=UI-R-Y0-acp-e-11-0-UI /FEA=EST /CNT=15 /TID=Rn.15652.2 /TIER=Stack /STK=7 /UG=Rn.15652 /UG_TITLE=ESTs, Weakly similar to T12483 hypothetical protein DKFZp564B0769.1 (H.sapiens) AI717547 BCL2-associated transcription factor 1 Bclaf1 293017 NM_001047852 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded 1373869_at AI012418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012418 /DB_XREF=gi:3226250 /DB_XREF=EST206869 /CLONE=RPLAX02 /FEA=EST /CNT=14 /TID=Rn.13213.1 /TIER=Stack /STK=7 /UG=Rn.13213 /UG_TITLE=ESTs AI012418 sterol O-acyltransferase 1 Soat1 81782 NM_031118 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0008203 // cholesterol metabolic process // traceable author statement /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0010742 // macrophage derived foam cell differentiation // not recorded /// 0010878 // cholesterol storage // inferred from electronic annotation /// 0010878 // cholesterol storage // not recorded /// 0033344 // cholesterol efflux // inferred from electronic annotation /// 0033344 // cholesterol efflux // not recorded /// 0034379 // very-low-density lipoprotein particle assembly // inferred from electronic annotation /// 0034379 // very-low-density lipoprotein particle assembly // not recorded /// 0034435 // cholesterol esterification // inferred from electronic annotation /// 0034435 // cholesterol esterification // not recorded /// 0042986 // positive regulation of amyloid precursor protein biosynthetic process // inferred from electronic annotation /// 0042986 // positive regulation of amyloid precursor protein biosynthetic process // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // not recorded /// 0005792 // microsome // traceable author statement /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0000062 // acyl-CoA binding // inferred from electronic annotation /// 0000062 // acyl-CoA binding // not recorded /// 0004607 // phosphatidylcholine-sterol O-acyltransferase activity // inferred from expression pattern /// 0004772 // sterol O-acyltransferase activity // inferred from direct assay /// 0004772 // sterol O-acyltransferase activity // not recorded /// 0004772 // sterol O-acyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0015485 // cholesterol binding // inferred from electronic annotation /// 0015485 // cholesterol binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0034736 // cholesterol O-acyltransferase activity // inferred from electronic annotation /// 0034736 // cholesterol O-acyltransferase activity // not recorded /// 0034737 // ergosterol O-acyltransferase activity // inferred from electronic annotation /// 0034738 // lanosterol O-acyltransferase activity // inferred from electronic annotation 1373870_at BE110630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110630 /DB_XREF=gi:8502735 /DB_XREF=UI-R-BJ1-avu-b-12-0-UI.s1 /CLONE=UI-R-BJ1-avu-b-12-0-UI /FEA=EST /CNT=14 /TID=Rn.12770.1 /TIER=Stack /STK=7 /UG=Rn.12770 /UG_TITLE=ESTs, Highly similar to T08675 hypothetical protein DKFZp564F0522.1 (H.sapiens) BE110630 family with sequence similarity 98, member A Fam98a 313873 NM_001014073 1373871_at AW435481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435481 /DB_XREF=gi:6966788 /DB_XREF=UI-R-BJ0p-afu-h-12-0-UI.s1 /CLONE=UI-R-BJ0p-afu-h-12-0-UI /FEA=EST /CNT=14 /TID=Rn.11526.1 /TIER=Stack /STK=7 /UG=Rn.11526 /UG_TITLE=ESTs AW435481 suppressor of Ty 7 (S. cerevisiae)-like Supt7l 313905 NM_001108010 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0043966 // histone H3 acetylation // not recorded /// 0051457 // maintenance of protein location in nucleus // inferred from electronic annotation /// 0051457 // maintenance of protein location in nucleus // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0030914 // STAGA complex // inferred from electronic annotation /// 0030914 // STAGA complex // not recorded 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // not recorded 1373872_at BE096535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096535 /DB_XREF=gi:8487466 /DB_XREF=UI-R-BU0-aph-c-07-0-UI.s1 /CLONE=UI-R-BU0-aph-c-07-0-UI /FEA=EST /CNT=13 /TID=Rn.17906.1 /TIER=Stack /STK=7 /UG=Rn.17906 /UG_TITLE=ESTs BE096535 mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A Mgat4a 367252 NM_001012225 /// NM_001160155 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008454 // alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373873_at AI175346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175346 /DB_XREF=gi:3725984 /DB_XREF=EST218887 /CLONE=RMUCM36 /FEA=EST /CNT=13 /TID=Rn.14050.1 /TIER=Stack /STK=7 /UG=Rn.14050 /UG_TITLE=ESTs AI175346 1373874_at AI169638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169638 /DB_XREF=gi:3709678 /DB_XREF=EST215526 /CLONE=RKIBV54 /FEA=EST /CNT=13 /TID=Rn.8423.1 /TIER=Stack /STK=7 /UG=Rn.8423 /UG_TITLE=ESTs AI169638 Sphingosine-1-phosphate phosphatase 1 Sgpp1 81536 XM_001080791 /// XM_343081 0006665 // sphingolipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // not recorded /// 0006668 // sphinganine-1-phosphate metabolic process // inferred from electronic annotation /// 0006668 // sphinganine-1-phosphate metabolic process // not recorded /// 0006670 // sphingosine metabolic process // inferred from electronic annotation /// 0006670 // sphingosine metabolic process // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0016311 // dephosphorylation // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0015629 // actin cytoskeleton // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042392 // sphingosine-1-phosphate phosphatase activity // inferred from electronic annotation /// 0042392 // sphingosine-1-phosphate phosphatase activity // not recorded 1373875_at BG381541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381541 /DB_XREF=gi:13306013 /DB_XREF=UI-R-CT0-buk-e-04-0-UI.s1 /CLONE=UI-R-CT0-buk-e-04-0-UI /FEA=EST /CNT=13 /TID=Rn.9293.1 /TIER=Stack /STK=7 /UG=Rn.9293 /UG_TITLE=ESTs BG381541 similar to RIKEN cDNA 1190005P17 RGD1308261 299818 NM_001134464 1373876_at BI295945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295945 /DB_XREF=gi:14959898 /DB_XREF=UI-R-DK0-cfc-f-01-0-UI.s1 /CLONE=UI-R-DK0-cfc-f-01-0-UI /FEA=EST /CNT=13 /TID=Rn.11732.2 /TIER=Stack /STK=7 /UG=Rn.11732 /UG_TITLE=ESTs, Highly similar to SAP3 MOUSE GANGLIOSIDE GM2 ACTIVATOR PRECURSOR (M.musculus) BI295945 eukaryotic translation initiation factor 4E family member 2 Eif4e2 363275 NM_001108808 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005845 // mRNA cap binding complex // not recorded /// 0005845 // mRNA cap binding complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1373877_at BF401685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401685 /DB_XREF=gi:11389660 /DB_XREF=UI-R-CA0-bgn-e-01-0-UI.s1 /CLONE=UI-R-CA0-bgn-e-01-0-UI /FEA=EST /CNT=12 /TID=Rn.24871.1 /TIER=Stack /STK=7 /UG=Rn.24871 /UG_TITLE=ESTs BF401685 Phosphatidylinositol binding clathrin assembly protein Picalm 89816 NM_053554 0006897 // endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // not recorded /// 0006898 // receptor-mediated endocytosis // inferred from sequence or structural similarity /// 0007409 // axonogenesis // inferred from mutant phenotype /// 0007409 // axonogenesis // not recorded /// 0016192 // vesicle-mediated transport // inferred from mutant phenotype /// 0016197 // endosome transport // not recorded /// 0030097 // hemopoiesis // not recorded /// 0030100 // regulation of endocytosis // inferred from mutant phenotype /// 0030100 // regulation of endocytosis // not recorded /// 0031623 // receptor internalization // not recorded /// 0032880 // regulation of protein localization // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0048261 // negative regulation of receptor-mediated endocytosis // not recorded /// 0048268 // clathrin coat assembly // inferred from direct assay /// 0048268 // clathrin coat assembly // not recorded /// 0048268 // clathrin coat assembly // inferred from electronic annotation /// 0048813 // dendrite morphogenesis // inferred from mutant phenotype /// 0048813 // dendrite morphogenesis // not recorded /// 0051223 // regulation of protein transport // inferred from mutant phenotype 0005622 // intracellular // not recorded /// 0005634 // nucleus // not recorded /// 0005768 // endosome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005905 // coated pit // not recorded /// 0005905 // coated pit // inferred from sequence or structural similarity /// 0005905 // coated pit // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030118 // clathrin coat // inferred from electronic annotation /// 0030122 // AP-2 adaptor complex // not recorded /// 0030132 // clathrin coat of coated pit // not recorded /// 0030136 // clathrin-coated vesicle // inferred from direct assay /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0045202 // synapse // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005545 // phosphatidylinositol binding // inferred from direct assay /// 0005545 // phosphatidylinositol binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from direct assay /// 0030276 // clathrin binding // inferred from direct assay /// 0030276 // clathrin binding // not recorded /// 0030276 // clathrin binding // inferred from sequence or structural similarity /// 0030276 // clathrin binding // inferred from electronic annotation /// 0032050 // clathrin heavy chain binding // not recorded 1373878_at AI104213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104213 /DB_XREF=gi:3708610 /DB_XREF=EST213502 /CLONE=RHEBY86 /FEA=EST /CNT=12 /TID=Rn.22506.1 /TIER=Stack /STK=7 /UG=Rn.22506 /UG_TITLE=ESTs AI104213 1373879_at AI234961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234961 /DB_XREF=gi:3828467 /DB_XREF=EST231523 /CLONE=ROVCK71 /FEA=EST /CNT=12 /TID=Rn.24103.1 /TIER=Stack /STK=7 /UG=Rn.24103 /UG_TITLE=ESTs AI234961 1373880_at AI408513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408513 /DB_XREF=gi:4252017 /DB_XREF=EST236803 /CLONE=ROVEQ31 /FEA=EST /CNT=12 /TID=Rn.16384.1 /TIER=Stack /STK=7 /UG=Rn.16384 /UG_TITLE=ESTs AI408513 1373881_at BF285771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285771 /DB_XREF=gi:11216841 /DB_XREF=EST450362 /CLONE=RGIFI83 /FEA=EST /CNT=12 /TID=Rn.15842.1 /TIER=Stack /STK=7 /UG=Rn.15842 /UG_TITLE=ESTs, Highly similar to RHO GDP-DISSOCIATION INHIBITOR 2 (M.musculus) BF285771 Rho, GDP dissociation inhibitor (GDI) beta Arhgdib 362456 NM_001009600 0005737 // cytoplasm // inferred from electronic annotation 0005094 // Rho GDP-dissociation inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373882_at AI170324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170324 /DB_XREF=gi:3710364 /DB_XREF=EST216250 /CLONE=RLUCG92 /FEA=EST /CNT=12 /TID=Rn.4256.1 /TIER=Stack /STK=7 /UG=Rn.4256 /UG_TITLE=ESTs AI170324 c-fos induced growth factor Figf 360457 NM_031761 0001525 // angiogenesis // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from expression pattern /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030947 // regulation of vascular endothelial growth factor receptor signaling pathway // inferred from mutant phenotype /// 0032755 // positive regulation of interleukin-6 production // inferred from mutant phenotype /// 0045766 // positive regulation of angiogenesis // traceable author statement /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from mutant phenotype /// 0048010 // vascular endothelial growth factor receptor signaling pathway // not recorded /// 0050930 // induction of positive chemotaxis // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0060754 // positive regulation of mast cell chemotaxis // not recorded /// 0070555 // response to interleukin-1 // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // not recorded 0005172 // vascular endothelial growth factor receptor binding // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0008083 // growth factor activity // traceable author statement /// 0042056 // chemoattractant activity // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043184 // vascular endothelial growth factor receptor 2 binding // not recorded /// 0043185 // vascular endothelial growth factor receptor 3 binding // not recorded 1373883_at BE102485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102485 /DB_XREF=gi:8494584 /DB_XREF=UI-R-BT1-aqn-b-12-0-UI.s1 /CLONE=UI-R-BT1-aqn-b-12-0-UI /FEA=EST /CNT=12 /TID=Rn.19513.1 /TIER=Stack /STK=7 /UG=Rn.19513 /UG_TITLE=ESTs BE102485 1373884_at BI298657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298657 /DB_XREF=gi:14974937 /DB_XREF=UI-R-CV2-chm-c-03-0-UI.s1 /CLONE=UI-R-CV2-chm-c-03-0-UI /FEA=EST /CNT=11 /TID=Rn.11786.1 /TIER=Stack /STK=7 /UG=Rn.11786 /UG_TITLE=ESTs, Weakly similar to KEAP_RAT KELCH-LIKE ECH-ASSOCIATED PROTEIN 1 (CYTOSOLIC INHIBITOR OF NRF2) (INRF2) (R.norvegicus) BI298657 kelch-like 2, Mayven (Drosophila) Klhl2 290692 XM_001073589 /// XM_214331 0005515 // protein binding // inferred from electronic annotation 1373885_at BF398015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398015 /DB_XREF=gi:11383000 /DB_XREF=UI-R-BS2-beg-c-12-0-UI.s1 /CLONE=UI-R-BS2-beg-c-12-0-UI /FEA=EST /CNT=11 /TID=Rn.18377.1 /TIER=Stack /STK=7 /UG=Rn.18377 /UG_TITLE=ESTs, Highly similar to CBX5 MOUSE CHROMOBOX PROTEIN HOMOLOG 5 (M.musculus) BF398015 chromobox homolog 5 (HP1 alpha homolog, Drosophila) Cbx5 300266 NM_001106797 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0000118 // histone deacetylase complex // inferred from electronic annotation /// 0000118 // histone deacetylase complex // not recorded /// 0000776 // kinetochore // inferred from electronic annotation /// 0000776 // kinetochore // not recorded /// 0000785 // chromatin // inferred from electronic annotation /// 0000792 // heterochromatin // not recorded /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005720 // nuclear heterochromatin // inferred from electronic annotation /// 0005720 // nuclear heterochromatin // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0010369 // chromocenter // inferred from electronic annotation /// 0010369 // chromocenter // not recorded /// 0016605 // PML body // inferred from electronic annotation /// 0016605 // PML body // not recorded /// 0017053 // transcriptional repressor complex // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // not recorded /// 0035097 // histone methyltransferase complex // inferred from electronic annotation /// 0035097 // histone methyltransferase complex // not recorded 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016565 // general transcriptional repressor activity // inferred from electronic annotation /// 0016565 // general transcriptional repressor activity // not recorded /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0030674 // protein binding, bridging // inferred from electronic annotation /// 0030674 // protein binding, bridging // not recorded /// 0035064 // methylated histone residue binding // inferred from electronic annotation /// 0035064 // methylated histone residue binding // not recorded /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded /// 0070491 // transcription repressor binding // inferred from electronic annotation /// 0070491 // transcription repressor binding // not recorded 1373886_at BF284692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284692 /DB_XREF=gi:11215762 /DB_XREF=EST449283 /CLONE=RGIEV02 /FEA=EST /CNT=11 /TID=Rn.11891.1 /TIER=Stack /STK=7 /UG=Rn.11891 /UG_TITLE=ESTs BF284692 receptor accessory protein 1 Reep1 362384 NM_001108633 0051205 // protein insertion into membrane // not recorded 0005737 // cytoplasm // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0031849 // olfactory receptor binding // not recorded 1373887_at BF523561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523561 /DB_XREF=gi:11631528 /DB_XREF=UI-R-C0-jr-d-05-0-UI.r1 /CLONE=UI-R-C0-jr-d-05-0-UI /FEA=EST /CNT=11 /TID=Rn.17734.1 /TIER=Stack /STK=7 /UG=Rn.17734 /UG_TITLE=ESTs BF523561 1373888_at BE113312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113312 /DB_XREF=gi:8505382 /DB_XREF=UI-R-BJ1-awd-e-11-0-UI.s1 /CLONE=UI-R-BJ1-awd-e-11-0-UI /FEA=EST /CNT=11 /TID=Rn.11685.1 /TIER=Stack /STK=7 /UG=Rn.11685 /UG_TITLE=ESTs, Highly similar to A3B1_MOUSE Adapter-related protein complex 3 beta 1 subunit (Beta-adaptin 3A) (AP-3 complex beta-3A subunit) (Beta-3A-adaptin) (M.musculus) BE113312 adaptor-related protein complex 3, beta 1 subunit Ap3b1 309969 NM_001107646 0006622 // protein targeting to lysosome // not recorded /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0007596 // blood coagulation // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019882 // antigen processing and presentation // not recorded /// 0048007 // antigen processing and presentation, exogenous lipid antigen via MHC class Ib // not recorded /// 0051138 // positive regulation of NK T cell differentiation // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0019903 // protein phosphatase binding // not recorded 1373889_at BF387360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387360 /DB_XREF=gi:11372184 /DB_XREF=UI-R-CA1-bbr-e-07-0-UI.s1 /CLONE=UI-R-CA1-bbr-e-07-0-UI /FEA=EST /CNT=11 /TID=Rn.37643.1 /TIER=Stack /STK=7 /UG=Rn.37643 /UG_TITLE=ESTs, Weakly similar to CM35_HUMAN CMRF35 ANTIGEN PRECURSOR (H.sapiens) BF387360 immunoglobulin superfamily, member 7 /// similar to CLM3 /// similar to dendritic cell-derived immunoglobulin(Ig)-like receptor 1, DIgR1 - mouse Igsf7 /// LOC363715 /// RGD1561778 287813 /// 303666 /// 363715 NM_001168284 /// XM_340957 /// XR_009483 0004872 // receptor activity // inferred from electronic annotation 1373890_at AA924522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924522 /DB_XREF=gi:4235713 /DB_XREF=UI-R-A1-ed-d-01-0-UI.s1 /CLONE=UI-R-A1-ed-d-01-0-UI /FEA=EST /CNT=11 /TID=Rn.8658.1 /TIER=Stack /STK=7 /UG=Rn.8658 /UG_TITLE=ESTs AA924522 coiled-coil-helix-coiled-coil-helix domain containing 5 Chchd5 296147 NM_001106509 1373891_at AI101009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101009 /DB_XREF=gi:3704555 /DB_XREF=EST210298 /CLONE=RBRBE13 /FEA=EST /CNT=11 /TID=Rn.23849.1 /TIER=Stack /STK=7 /UG=Rn.23849 /UG_TITLE=ESTs AI101009 zinc finger, CCHC domain containing 12 Zcchc12 313436 NM_001014065 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373892_at AA945986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945986 /DB_XREF=gi:4132659 /DB_XREF=EST201485 /CLONE=RLUAZ76 /FEA=EST /CNT=11 /TID=Rn.7962.1 /TIER=Stack /STK=7 /UG=Rn.7962 /UG_TITLE=ESTs AA945986 1373893_at BI291309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291309 /DB_XREF=gi:14950727 /DB_XREF=UI-R-CV2-cgo-c-06-0-UI.s1 /CLONE=UI-R-CV2-cgo-c-06-0-UI /FEA=EST /CNT=11 /TID=Rn.20487.1 /TIER=Stack /STK=7 /UG=Rn.20487 /UG_TITLE=ESTs, Highly similar to T51168 anaphase-promoting complex subunit 8 (H.sapiens) BI291309 CDC23 (cell division cycle 23, yeast, homolog) Cdc23 291689 NM_001100659 0000080 // G1 phase of mitotic cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007080 // mitotic metaphase plate congression // inferred from electronic annotation /// 0030071 // regulation of mitotic metaphase/anaphase transition // inferred from electronic annotation /// 0070979 // protein K11-linked ubiquitination // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005680 // anaphase-promoting complex // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1373894_at BF410946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410946 /DB_XREF=gi:11398921 /DB_XREF=UI-R-CN0-bmf-h-08-0-UI.s1 /CLONE=UI-R-CN0-bmf-h-08-0-UI /FEA=EST /CNT=11 /TID=Rn.28921.1 /TIER=Stack /STK=7 /UG=Rn.28921 /UG_TITLE=ESTs BF410946 RAB31, member RAS oncogene family Rab31 246324 NM_145094 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0048193 // Golgi vesicle transport // inferred from mutant phenotype 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1373895_at BE118440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118440 /DB_XREF=gi:8510545 /DB_XREF=UI-R-BJ1-azp-f-05-0-UI.s1 /CLONE=UI-R-BJ1-azp-f-05-0-UI /FEA=EST /CNT=11 /TID=Rn.15869.1 /TIER=Stack /STK=7 /UG=Rn.15869 /UG_TITLE=ESTs BE118440 1373896_at AA943569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943569 /DB_XREF=gi:3103485 /DB_XREF=EST199068 /CLONE=RBRAL61 /FEA=EST /CNT=11 /TID=Rn.7596.1 /TIER=Stack /STK=7 /UG=Rn.7596 /UG_TITLE=ESTs AA943569 1373897_at AI103106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103106 /DB_XREF=gi:3704827 /DB_XREF=EST212395 /CLONE=REMBX33 /FEA=EST /CNT=11 /TID=Rn.13118.1 /TIER=Stack /STK=7 /UG=Rn.13118 /UG_TITLE=ESTs AI103106 Lamin B1 Lmnb1 116685 NM_053905 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005635 // nuclear envelope // not recorded /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005638 // lamin filament // inferred from electronic annotation /// 0005638 // lamin filament // not recorded /// 0005882 // intermediate filament // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from direct assay 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373898_at BM387873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387873 /DB_XREF=gi:18187926 /DB_XREF=UI-R-CN1-cjk-h-21-0-UI.s1 /CLONE=UI-R-CN1-cjk-h-21-0-UI /FEA=EST /CNT=11 /TID=Rn.22221.1 /TIER=Stack /STK=7 /UG=Rn.22221 /UG_TITLE=ESTs BM387873 PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae) Pan3 360760 XM_001068449 /// XM_002724789 /// XM_002727930 /// XM_346914 0006468 // protein phosphorylation // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1373899_at BI275244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275244 /DB_XREF=gi:14886898 /DB_XREF=UI-R-CX0-bwr-c-06-0-UI.s1 /CLONE=UI-R-CX0-bwr-c-06-0-UI /FEA=EST /CNT=11 /TID=Rn.44182.1 /TIER=Stack /STK=7 /UG=Rn.44182 /UG_TITLE=ESTs, Weakly similar to biotin biosynthesis; reaction prior to pimeloyl CoA (Escherichia coli K12) (E.coli) BI275244 similar to dJ842G6.1.1 (novel protein) RGD1309829 296190 NM_001126371 0008152 // metabolic process // inferred from electronic annotation /// 0032981 // mitochondrial respiratory chain complex I assembly // inferred from electronic annotation /// 0032981 // mitochondrial respiratory chain complex I assembly // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031314 // extrinsic to mitochondrial inner membrane // inferred from electronic annotation /// 0031314 // extrinsic to mitochondrial inner membrane // not recorded 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1373900_at BI284344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284344 /DB_XREF=gi:14936935 /DB_XREF=UI-R-CX0s-cco-a-11-0-UI.s1 /CLONE=UI-R-CX0s-cco-a-11-0-UI /FEA=EST /CNT=11 /TID=Rn.7913.1 /TIER=Stack /STK=7 /UG=Rn.7913 /UG_TITLE=ESTs, Weakly similar to K2C8 RAT KERATIN, TYPE II CYTOSKELETAL 8 (R.norvegicus) BI284344 keratin 7 Krt7 300242 NM_001047870 0006260 // DNA replication // not recorded /// 0006260 // DNA replication // inferred from sequence or structural similarity /// 0006260 // DNA replication // inferred from electronic annotation /// 0006417 // regulation of translation // not recorded /// 0006417 // regulation of translation // inferred from sequence or structural similarity /// 0006417 // regulation of translation // inferred from electronic annotation /// 0051325 // interphase // not recorded /// 0051325 // interphase // inferred from sequence or structural similarity /// 0051325 // interphase // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005882 // intermediate filament // inferred from electronic annotation /// 0045095 // keratin filament // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373901_at BI278570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278570 /DB_XREF=gi:14925546 /DB_XREF=UI-R-CW0-bxn-c-10-0-UI.s1 /CLONE=UI-R-CW0-bxn-c-10-0-UI /FEA=EST /CNT=17 /TID=Rn.20584.1 /TIER=Stack /STK=7 /UG=Rn.20584 /UG_TITLE=ESTs, Weakly similar to DOC1 MOUSE PUTATIVE ORAL CANCER SUPPRESSOR (M.musculus) BI278570 CDK2-associated protein 2 Cdk2ap2 688405 NM_001109498 1373902_at AI230054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230054 /DB_XREF=gi:4135507 /DB_XREF=EST226749 /CLONE=REMCQ37 /FEA=EST /CNT=13 /TID=Rn.11771.1 /TIER=Stack /STK=7 /UG=Rn.11771 /UG_TITLE=ESTs AI230054 ribosomal modification protein rimK-like family member B Rimklb 362428 XM_001060530 /// XM_342749 0006464 // protein modification process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1373903_at AI011920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011920 /DB_XREF=gi:3225752 /DB_XREF=EST206371 /CLONE=RPLAQ46 /FEA=EST /CNT=13 /TID=Rn.14510.1 /TIER=Stack /STK=7 /UG=Rn.14510 /UG_TITLE=ESTs, Moderately similar to WDR1_MOUSE WD-REPEAT PROTEIN 1 (ACTIN INTERACTING PROTEIN 1) (M.musculus) AI011920 RCSD domain containing 1 Rcsd1 360872 NM_001108349 1373904_at AI103948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103948 /DB_XREF=gi:3708411 /DB_XREF=EST213237 /CLONE=RHEBV49 /FEA=EST /CNT=13 /TID=Rn.7432.1 /TIER=Stack /STK=7 /UG=Rn.7432 /UG_TITLE=ESTs AI103948 LysM, putative peptidoglycan-binding, domain containing 2 Lysmd2 300839 NM_001106839 0016998 // cell wall macromolecule catabolic process // inferred from electronic annotation 1373905_at AI178441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178441 /DB_XREF=gi:4135073 /DB_XREF=EST222114 /CLONE=RPLCR08 /FEA=EST /CNT=13 /TID=Rn.14947.1 /TIER=Stack /STK=7 /UG=Rn.14947 /UG_TITLE=ESTs, Highly similar to ROR_HUMAN Heterogeneous nuclear ribonucleoprotein R (hnRNP R) (H.sapiens) AI178441 heterogeneous nuclear ribonucleoprotein R Hnrnpr 319110 NM_175603 0008380 // RNA splicing // not recorded 0005634 // nucleus // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373906_at AI104594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104594 /DB_XREF=gi:3704985 /DB_XREF=EST213883 /CLONE=RHECF75 /FEA=EST /CNT=13 /TID=Rn.30929.1 /TIER=Stack /STK=7 /UG=Rn.30929 /UG_TITLE=ESTs AI104594 family with sequence similarity 173, member B Fam173b 499561 NM_001109178 1373907_at BI288890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288890 /DB_XREF=gi:14945909 /DB_XREF=UI-R-CS0s-cbl-c-12-0-UI.s2 /CLONE=UI-R-CS0s-cbl-c-12-0-UI /FEA=EST /CNT=12 /TID=Rn.9580.1 /TIER=Stack /STK=7 /UG=Rn.9580 /UG_TITLE=ESTs, Highly similar to AF151862 1 CGI-104 protein (H.sapiens) BI288890 trafficking protein particle complex 4 Trappc4 367073 NM_001003708 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005801 // cis-Golgi network // inferred from electronic annotation /// 0030008 // TRAPP complex // inferred from electronic annotation /// 0030008 // TRAPP complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373908_at AI407002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407002 /DB_XREF=gi:4250506 /DB_XREF=EST235290 /CLONE=ROVDV15 /FEA=EST /CNT=12 /TID=Rn.41951.1 /TIER=Stack /STK=7 /UG=Rn.41951 /UG_TITLE=ESTs AI407002 1373909_at AI175507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175507 /DB_XREF=gi:3726145 /DB_XREF=EST219059 /CLONE=RMUCO35 /FEA=EST /CNT=12 /TID=Rn.3984.1 /TIER=Stack /STK=7 /UG=Rn.3984 /UG_TITLE=ESTs AI175507 1373910_at BG373576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373576 /DB_XREF=gi:13270113 /DB_XREF=UI-R-CV1-bse-d-09-0-UI.s1 /CLONE=UI-R-CV1-bse-d-09-0-UI /FEA=EST /CNT=12 /TID=Rn.18530.1 /TIER=Stack /STK=7 /UG=Rn.18530 /UG_TITLE=ESTs BG373576 protein arginine methyltransferase 6 Prmt6 295384 NM_001106466 0006479 // protein methylation // inferred from electronic annotation /// 0019919 // peptidyl-arginine methylation, to asymmetrical-dimethyl arginine // not recorded /// 0034970 // histone H3-R2 methylation // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008276 // protein methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0035241 // protein-arginine omega-N monomethyltransferase activity // not recorded /// 0035242 // protein-arginine omega-N asymmetric methyltransferase activity // not recorded /// 0042393 // histone binding // not recorded /// 0044020 // histone methyltransferase activity (H4-R3 specific) // not recorded /// 0070611 // histone methyltransferase activity (H3-R2 specific) // not recorded /// 0070612 // histone methyltransferase activity (H2A-R3 specific) // not recorded 1373911_at BM389026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389026 /DB_XREF=gi:18189079 /DB_XREF=UI-R-DZ0-cko-b-21-0-UI.s1 /CLONE=UI-R-DZ0-cko-b-21-0-UI /FEA=EST /CNT=12 /TID=Rn.30516.1 /TIER=Stack /STK=7 /UG=Rn.30516 /UG_TITLE=ESTs BM389026 periostin, osteoblast specific factor Postn 361945 NM_001108550 0007155 // cell adhesion // not recorded /// 0009888 // tissue development // not recorded /// 0030198 // extracellular matrix organization // not recorded 0005578 // proteinaceous extracellular matrix // not recorded /// 0031012 // extracellular matrix // not recorded 0008201 // heparin binding // not recorded 1373912_at AI170859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170859 /DB_XREF=gi:4134555 /DB_XREF=EST216800 /CLONE=RMUBC67 /FEA=EST /CNT=12 /TID=Rn.7802.1 /TIER=Stack /STK=7 /UG=Rn.7802 /UG_TITLE=ESTs AI170859 ectonucleotide pyrophosphatase/phosphodiesterase 4 Enpp4 301261 NM_001106892 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation 1373913_at BF282271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282271 /DB_XREF=gi:11213455 /DB_XREF=EST446976 /CLONE=RGIDM80 /FEA=EST /CNT=12 /TID=Rn.23118.1 /TIER=Stack /STK=7 /UG=Rn.23118 /UG_TITLE=ESTs, Highly similar to T50626 hypothetical protein DKFZp762K1914.1 (H.sapiens) BF282271 polyribonucleotide nucleotidyltransferase 1 Pnpt1 360992 NM_001142371 0006396 // RNA processing // inferred from electronic annotation /// 0006402 // mRNA catabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005758 // mitochondrial intermembrane space // not recorded /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation 0000175 // 3'-5'-exoribonuclease activity // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004654 // polyribonucleotide nucleotidyltransferase activity // inferred from electronic annotation 1373914_at BM389075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389075 /DB_XREF=gi:18189128 /DB_XREF=UI-R-DZ0-cko-l-23-0-UI.s1 /CLONE=UI-R-DZ0-cko-l-23-0-UI /FEA=EST /CNT=11 /TID=Rn.30828.1 /TIER=Stack /STK=7 /UG=Rn.30828 /UG_TITLE=ESTs BM389075 1373915_at AI044427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044427 /DB_XREF=gi:3291330 /DB_XREF=UI-R-C1-jw-b-09-0-UI.s1 /CLONE=UI-R-C1-jw-b-09-0-UI /FEA=EST /CNT=11 /TID=Rn.6550.1 /TIER=Stack /STK=7 /UG=Rn.6550 /UG_TITLE=ESTs, Highly similar to dystrophia myotonica kinase, B15 (Mus musculus) (M.musculus) AI044427 1373916_at AI237356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237356 /DB_XREF=gi:4136308 /DB_XREF=EST233918 /CLONE=RPLCY02 /FEA=EST /CNT=11 /TID=Rn.12447.1 /TIER=Stack /STK=7 /UG=Rn.12447 /UG_TITLE=ESTs, Weakly similar to CBP MOUSE CREB-BINDING PROTEIN (M.musculus) AI237356 E1A binding protein p300 Ep300 170915 XM_001076610 /// XM_576312 0001666 // response to hypoxia // inferred from expression pattern /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001756 // somitogenesis // not recorded /// 0001889 // liver development // inferred from expression pattern /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0009749 // response to glucose stimulus // inferred from mutant phenotype /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0010560 // positive regulation of glycoprotein biosynthetic process // inferred from mutant phenotype /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016573 // histone acetylation // inferred from electronic annotation /// 0018076 // N-terminal peptidyl-lysine acetylation // inferred from electronic annotation /// 0018076 // N-terminal peptidyl-lysine acetylation // not recorded /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0031324 // negative regulation of cellular metabolic process // inferred from mutant phenotype /// 0031325 // positive regulation of cellular metabolic process // inferred from mutant phenotype /// 0032025 // response to cobalt ion // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032967 // positive regulation of collagen biosynthetic process // inferred from mutant phenotype /// 0033160 // positive regulation of protein import into nucleus, translocation // inferred from mutant phenotype /// 0042493 // response to drug // inferred from mutant phenotype /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043388 // positive regulation of DNA binding // inferred from mutant phenotype /// 0043491 // protein kinase B signaling cascade // inferred from direct assay /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0043967 // histone H4 acetylation // inferred from electronic annotation /// 0043967 // histone H4 acetylation // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from expression pattern /// 0045727 // positive regulation of translation // inferred from mutant phenotype /// 0045773 // positive regulation of axon extension // inferred from mutant phenotype /// 0045793 // positive regulation of cell size // inferred from mutant phenotype /// 0045862 // positive regulation of proteolysis // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048565 // digestive tract development // inferred from expression pattern /// 0050714 // positive regulation of protein secretion // inferred from mutant phenotype /// 0051091 // positive regulation of transcription factor activity // inferred from electronic annotation /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from mutant phenotype /// 0051592 // response to calcium ion // inferred from mutant phenotype /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0060177 // regulation of angiotensin metabolic process // inferred from direct assay /// 0060298 // positive regulation of sarcomere organization // inferred from mutant phenotype /// 0065004 // protein-DNA complex assembly // inferred from direct assay /// 0070301 // cellular response to hydrogen peroxide // inferred from expression pattern /// 0070542 // response to fatty acid // inferred from expression pattern 0000123 // histone acetyltransferase complex // inferred from electronic annotation /// 0000123 // histone acetyltransferase complex // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred by curator /// 0005667 // transcription factor complex // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0032993 // protein-DNA complex // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003712 // transcription cofactor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0003823 // antigen binding // inferred from direct assay /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from mutant phenotype /// 0004402 // histone acetyltransferase activity // not recorded /// 0004468 // lysine N-acetyltransferase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0008134 // transcription factor binding // inferred from direct assay /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from direct assay /// 0016407 // acetyltransferase activity // inferred from electronic annotation /// 0016407 // acetyltransferase activity // not recorded /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from physical interaction /// 0035259 // glucocorticoid receptor binding // inferred from direct assay /// 0042975 // peroxisome proliferator activated receptor binding // inferred from direct assay /// 0043425 // bHLH transcription factor binding // inferred from physical interaction /// 0046332 // SMAD binding // inferred from physical interaction /// 0051019 // mitogen-activated protein kinase binding // inferred from physical interaction /// 0051059 // NF-kappaB binding // inferred from physical interaction 1373917_at BE100459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100459 /DB_XREF=gi:8492352 /DB_XREF=UI-R-BJ1-atv-f-12-0-UI.s1 /CLONE=UI-R-BJ1-atv-f-12-0-UI /FEA=EST /CNT=11 /TID=Rn.11779.1 /TIER=Stack /STK=7 /UG=Rn.11779 /UG_TITLE=ESTs BE100459 Eukaryotic translation termination factor 1 Etf1 307503 NM_001008344 0006412 // translation // inferred from electronic annotation /// 0006415 // translational termination // inferred from electronic annotation /// 0006479 // protein methylation // inferred from electronic annotation /// 0006479 // protein methylation // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016149 // translation release factor activity, codon specific // inferred from electronic annotation 1373918_at BG374035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374035 /DB_XREF=gi:13298507 /DB_XREF=UI-R-CV1-bsl-f-11-0-UI.s1 /CLONE=UI-R-CV1-bsl-f-11-0-UI /FEA=EST /CNT=11 /TID=Rn.24910.1 /TIER=Stack /STK=7 /UG=Rn.24910 /UG_TITLE=ESTs BG374035 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) Rdh11 362757 NM_001012193 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1373919_at AA943801 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943801 /DB_XREF=gi:3103717 /DB_XREF=EST199300 /CLONE=RBRAP83 /FEA=EST /CNT=11 /TID=Rn.21457.1 /TIER=Stack /STK=7 /UG=Rn.21457 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) AA943801 CDGSH iron sulfur domain 2 Cisd2 295457 NM_001191608 /// XM_001077768 /// XM_215704 0000422 // mitochondrion degradation // not recorded /// 0010259 // multicellular organismal aging // not recorded /// 0010506 // regulation of autophagy // not recorded 0005741 // mitochondrial outer membrane // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // not recorded 1373920_at AI175534 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175534 /DB_XREF=gi:3726172 /DB_XREF=EST219088 /CLONE=RMUCO68 /FEA=EST /CNT=11 /TID=Rn.17151.1 /TIER=Stack /STK=7 /UG=Rn.17151 /UG_TITLE=ESTs AI175534 1373921_at AI169007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169007 /DB_XREF=gi:3705315 /DB_XREF=EST214835 /CLONE=RKIBL78 /FEA=EST /CNT=11 /TID=Rn.7837.1 /TIER=Stack /STK=7 /UG=Rn.7837 /UG_TITLE=ESTs AI169007 enoyl Coenzyme A hydratase domain containing 3 Echdc3 684538 NM_001101010 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation 1373922_at BG377024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377024 /DB_XREF=gi:13301496 /DB_XREF=UI-R-CS0-bvm-d-12-0-UI.s1 /CLONE=UI-R-CS0-bvm-d-12-0-UI /FEA=EST /CNT=11 /TID=Rn.18449.1 /TIER=Stack /STK=7 /UG=Rn.18449 /UG_TITLE=ESTs BG377024 1373923_at BF283756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283756 /DB_XREF=gi:11214826 /DB_XREF=EST448347 /CLONE=RGIEG45 /FEA=EST /CNT=11 /TID=Rn.7406.1 /TIER=Stack /STK=7 /UG=Rn.7406 /UG_TITLE=ESTs BF283756 Retinol dehydrogenase 10 (all-trans) Rdh10 353252 NM_181478 0001656 // metanephros development // inferred from electronic annotation /// 0001656 // metanephros development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0002138 // retinoic acid biosynthetic process // inferred from electronic annotation /// 0002138 // retinoic acid biosynthetic process // not recorded /// 0007601 // visual perception // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008406 // gonad development // inferred from electronic annotation /// 0008406 // gonad development // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0014032 // neural crest cell development // inferred from electronic annotation /// 0014032 // neural crest cell development // not recorded /// 0031076 // embryonic camera-type eye development // inferred from electronic annotation /// 0031076 // embryonic camera-type eye development // not recorded /// 0035115 // embryonic forelimb morphogenesis // inferred from electronic annotation /// 0035115 // embryonic forelimb morphogenesis // not recorded /// 0042572 // retinol metabolic process // inferred from electronic annotation /// 0042572 // retinol metabolic process // not recorded /// 0042574 // retinal metabolic process // inferred from electronic annotation /// 0042574 // retinal metabolic process // not recorded /// 0043583 // ear development // inferred from electronic annotation /// 0043583 // ear development // not recorded /// 0043584 // nose development // inferred from electronic annotation /// 0043584 // nose development // not recorded /// 0048568 // embryonic organ development // not recorded /// 0048568 // embryonic organ development // inferred from electronic annotation /// 0048703 // embryonic viscerocranium morphogenesis // inferred from electronic annotation /// 0048703 // embryonic viscerocranium morphogenesis // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060431 // primary lung bud formation // inferred from electronic annotation /// 0060431 // primary lung bud formation // not recorded /// 0060449 // bud elongation involved in lung branching // inferred from electronic annotation /// 0060449 // bud elongation involved in lung branching // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004745 // retinol dehydrogenase activity // inferred from electronic annotation /// 0004745 // retinol dehydrogenase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1373924_at AI712686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712686 /DB_XREF=gi:5016486 /DB_XREF=UI-R-AF1-aau-c-12-0-UI.s1 /CLONE=UI-R-AF1-aau-c-12-0-UI /FEA=EST /CNT=11 /TID=Rn.8681.1 /TIER=Stack /STK=7 /UG=Rn.8681 /UG_TITLE=ESTs AI712686 calcineurin-like phosphoesterase domain containing 1 Cpped1 302890 NM_001013963 0055085 // transmembrane transport // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373925_at BE112950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112950 /DB_XREF=gi:8505055 /DB_XREF=UI-R-BJ1-awa-g-01-0-UI.s1 /CLONE=UI-R-BJ1-awa-g-01-0-UI /FEA=EST /CNT=10 /TID=Rn.19514.1 /TIER=Stack /STK=7 /UG=Rn.19514 /UG_TITLE=ESTs BE112950 acylglycerol kinase Agk 502749 NM_001127497 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0046513 // ceramide biosynthetic process // not recorded /// 0046834 // lipid phosphorylation // not recorded 0005739 // mitochondrion // not recorded /// 0016020 // membrane // not recorded 0001727 // lipid kinase activity // not recorded /// 0001729 // ceramide kinase activity // not recorded /// 0003951 // NAD+ kinase activity // inferred from electronic annotation /// 0004143 // diacylglycerol kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1373926_at BF282810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282810 /DB_XREF=gi:11213880 /DB_XREF=EST447401 /CLONE=RGIDT47 /FEA=EST /CNT=10 /TID=Rn.22494.1 /TIER=Stack /STK=7 /UG=Rn.22494 /UG_TITLE=ESTs BF282810 1373927_at BI283489 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283489 /DB_XREF=gi:14935283 /DB_XREF=UI-R-DE0-cab-h-08-0-UI.s1 /CLONE=UI-R-DE0-cab-h-08-0-UI /FEA=EST /CNT=10 /TID=Rn.2796.1 /TIER=Stack /STK=7 /UG=Rn.2796 /UG_TITLE=ESTs BI283489 HMG box domain containing 4 Hmgxb4 307667 NM_001107412 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1373928_at BM383766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383766 /DB_XREF=gi:18183819 /DB_XREF=UI-R-DM1-ckb-d-11-0-UI.s1 /CLONE=UI-R-DM1-ckb-d-11-0-UI /FEA=EST /CNT=10 /TID=Rn.17451.1 /TIER=Stack /STK=7 /UG=Rn.17451 /UG_TITLE=ESTs BM383766 interleukin 17 receptor E Il17re 362417 NM_001004091 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1373929_at BI279787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279787 /DB_XREF=gi:14927939 /DB_XREF=UI-R-CU0s-cbq-h-04-0-UI.s1 /CLONE=UI-R-CU0s-cbq-h-04-0-UI /FEA=EST /CNT=10 /TID=Rn.24879.1 /TIER=Stack /STK=7 /UG=Rn.24879 /UG_TITLE=ESTs, Moderately similar to JC7165 mitochondrial ribosomal protein S7 small chain precursor (H.sapiens) BI279787 mitochondrial ribosomal protein S7 Mrps7 113958 XM_001081692 /// XM_213513 0006412 // translation // inferred from sequence or structural similarity /// 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373930_at BM388963 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388963 /DB_XREF=gi:18189016 /DB_XREF=UI-R-DZ0-ckn-b-22-0-UI.s1 /CLONE=UI-R-DZ0-ckn-b-22-0-UI /FEA=EST /CNT=10 /TID=Rn.11954.1 /TIER=Stack /STK=7 /UG=Rn.11954 /UG_TITLE=ESTs, Weakly similar to KEND_HUMAN KENDRIN (H.sapiens) BM388963 similar to pericentrin LOC687681 687681 XM_002725837 1373931_at C07069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:C07069 /DB_XREF=gi:1503845 /DB_XREF=C07069 /FEA=EST /CNT=10 /TID=Rn.13411.1 /TIER=Stack /STK=7 /UG=Rn.13411 /UG_TITLE=ESTs C07069 similar to RIKEN cDNA C530028O21 gene RGD1304952 312711 NM_001014059 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1373932_at BE098739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098739 /DB_XREF=gi:8490608 /DB_XREF=UI-R-BJ1-atd-d-03-0-UI.s1 /CLONE=UI-R-BJ1-atd-d-03-0-UI /FEA=EST /CNT=10 /TID=Rn.13512.1 /TIER=Stack /STK=7 /UG=Rn.13512 /UG_TITLE=ESTs BE098739 1373933_at BF407276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407276 /DB_XREF=gi:11395251 /DB_XREF=UI-R-BJ2-bqc-g-04-0-UI.s1 /CLONE=UI-R-BJ2-bqc-g-04-0-UI /FEA=EST /CNT=10 /TID=Rn.23121.1 /TIER=Stack /STK=7 /UG=Rn.23121 /UG_TITLE=ESTs BF407276 Rap guanine nucleotide exchange factor (GEF) 2 Rapgef2 310533 NM_001107684 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // not recorded 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0017034 // Rap guanyl-nucleotide exchange factor activity // not recorded /// 0046582 // Rap GTPase activator activity // not recorded 1373934_at AI178214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178214 /DB_XREF=gi:3728852 /DB_XREF=EST221879 /CLONE=RPLCN61 /FEA=EST /CNT=10 /TID=Rn.3702.1 /TIER=Stack /STK=7 /UG=Rn.3702 /UG_TITLE=ESTs AI178214 Ras association (RalGDS/AF-6) domain family member 3 Rassf3 362886 NM_001108747 0007165 // signal transduction // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1373935_at AI102751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102751 /DB_XREF=gi:3704738 /DB_XREF=EST212040 /CLONE=REMBS07 /FEA=EST /CNT=10 /TID=Rn.22989.1 /TIER=Stack /STK=7 /UG=Rn.22989 /UG_TITLE=ESTs, Highly similar to DPD2 MOUSE DNA POLYMERASE DELTA SMALL SUBUNIT (M.musculus) AI102751 polymerase (DNA directed), delta 2, regulatory subunit Pold2 289758 NM_001013050 0006260 // DNA replication // inferred from electronic annotation /// 0006261 // DNA-dependent DNA replication // inferred from mutant phenotype /// 0006297 // nucleotide-excision repair, DNA gap filling // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0043625 // delta DNA polymerase complex // inferred by curator 0003677 // DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1373936_at AI407107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407107 /DB_XREF=gi:4250611 /DB_XREF=EST235395 /CLONE=ROVDT10 /FEA=EST /CNT=10 /TID=Rn.7935.1 /TIER=Stack /STK=7 /UG=Rn.7935 /UG_TITLE=ESTs AI407107 Ring finger protein 44 Rnf44 361212 NM_001024795 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373937_at AA799661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799661 /DB_XREF=gi:4131426 /DB_XREF=EST189158 /CLONE=RHEAD70 /FEA=EST /CNT=10 /TID=Rn.17744.1 /TIER=Stack /STK=7 /UG=Rn.17744 /UG_TITLE=ESTs AA799661 FYVE and coiled-coil domain containing 1 Fyco1 301085 NM_001106870 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373938_at BF284753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284753 /DB_XREF=gi:11215823 /DB_XREF=EST449344 /CLONE=RGIEV78 /FEA=EST /CNT=10 /TID=Rn.20330.1 /TIER=Stack /STK=7 /UG=Rn.20330 /UG_TITLE=ESTs, Weakly similar to S66835 probable membrane protein YOL138c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BF284753 WD repeat domain 24 Wdr24 360497 NM_001191084 /// XM_001061380 /// XM_001063483 1373939_at AI236719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236719 /DB_XREF=gi:3830225 /DB_XREF=EST233281 /CLONE=ROVDJ70 /FEA=EST /CNT=10 /TID=Rn.6225.1 /TIER=Stack /STK=7 /UG=Rn.6225 /UG_TITLE=ESTs, Weakly similar to T34482 hypothetical protein W06B4.2 - Caenorhabditis elegans (C.elegans) AI236719 N-acetylglucosamine kinase Nagk 297393 NM_001037768 0006044 // N-acetylglucosamine metabolic process // inferred from electronic annotation /// 0006044 // N-acetylglucosamine metabolic process // not recorded /// 0046835 // carbohydrate phosphorylation // not recorded 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0009384 // N-acylmannosamine kinase activity // inferred from electronic annotation /// 0009384 // N-acylmannosamine kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0045127 // N-acetylglucosamine kinase activity // inferred from electronic annotation /// 0045127 // N-acetylglucosamine kinase activity // not recorded 1373940_at BM386507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386507 /DB_XREF=gi:18186560 /DB_XREF=UI-R-CN1-cjg-m-11-0-UI.s1 /CLONE=UI-R-CN1-cjg-m-11-0-UI /FEA=EST /CNT=10 /TID=Rn.8768.1 /TIER=Stack /STK=7 /UG=Rn.8768 /UG_TITLE=ESTs, Weakly similar to GRB2_HUMAN GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2 (R.norvegicus) BM386507 NCK adaptor protein 1 Nck1 300955 NM_001106851 0007015 // actin filament organization // inferred from electronic annotation /// 0007015 // actin filament organization // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0030032 // lamellipodium assembly // inferred from electronic annotation /// 0030032 // lamellipodium assembly // not recorded /// 0030838 // positive regulation of actin filament polymerization // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0042110 // T cell activation // inferred from electronic annotation /// 0042110 // T cell activation // not recorded 0005829 // cytosol // not recorded /// 0012506 // vesicle membrane // inferred from electronic annotation /// 0012506 // vesicle membrane // not recorded 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded 1373941_at BE103152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103152 /DB_XREF=gi:8495291 /DB_XREF=UI-R-BT1-aqx-f-07-0-UI.s1 /CLONE=UI-R-BT1-aqx-f-07-0-UI /FEA=EST /CNT=10 /TID=Rn.7090.1 /TIER=Stack /STK=7 /UG=Rn.7090 /UG_TITLE=ESTs BE103152 YEATS domain containing 2 Yeats2 498112 NM_001109057 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1373942_at BF396312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396312 /DB_XREF=gi:11381284 /DB_XREF=UI-R-BS2-bdw-f-12-0-UI.s1 /CLONE=UI-R-BS2-bdw-f-12-0-UI /FEA=EST /CNT=10 /TID=Rn.2860.1 /TIER=Stack /STK=7 /UG=Rn.2860 /UG_TITLE=ESTs BF396312 1373943_at AI237047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237047 /DB_XREF=gi:4136281 /DB_XREF=EST233609 /CLONE=ROVDO01 /FEA=EST /CNT=10 /TID=Rn.7796.1 /TIER=Stack /STK=7 /UG=Rn.7796 /UG_TITLE=ESTs AI237047 serine/threonine kinase 4 Stk4 311622 NM_001107800 0000902 // cell morphogenesis // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0035329 // hippo signaling cascade // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0046777 // protein autophosphorylation // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043539 // protein serine/threonine kinase activator activity // not recorded /// 0046983 // protein dimerization activity // not recorded 1373944_at AW530292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530292 /DB_XREF=gi:7172706 /DB_XREF=UI-R-BU0-amu-h-09-0-UI.s1 /CLONE=UI-R-BU0-amu-h-09-0-UI /FEA=EST /CNT=10 /TID=Rn.16273.1 /TIER=Stack /STK=7 /UG=Rn.16273 /UG_TITLE=ESTs AW530292 1373945_at AI012571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012571 /DB_XREF=gi:4133664 /DB_XREF=EST207022 /CLONE=RPLAZ08 /FEA=EST /CNT=10 /TID=Rn.12319.1 /TIER=Stack /STK=7 /UG=Rn.12319 /UG_TITLE=ESTs AI012571 bruno-like 5, RNA binding protein (Drosophila) Brunol5 314647 NM_001135603 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1373946_at AI409943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409943 /DB_XREF=gi:4253447 /DB_XREF=EST238236 /CLONE=RPLDN16 /FEA=EST /CNT=10 /TID=Rn.2408.1 /TIER=Stack /STK=7 /UG=Rn.2408 /UG_TITLE=ESTs, Weakly similar to KIAA0512 protein (H.sapiens) AI409943 armadillo repeat containing 10 Armc10 296758 NM_001106576 0040008 // regulation of growth // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1373947_at BI278545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278545 /DB_XREF=gi:14925496 /DB_XREF=UI-R-CW0-bxn-a-07-0-UI.s1 /CLONE=UI-R-CW0-bxn-a-07-0-UI /FEA=EST /CNT=10 /TID=Rn.8396.1 /TIER=Stack /STK=7 /UG=Rn.8396 /UG_TITLE=ESTs, Highly similar to A47220 dermatopontin precursor (H.sapiens) BI278545 dermatopontin Dpt 289178 NM_001105965 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0030199 // collagen fibril organization // not recorded /// 0030199 // collagen fibril organization // inferred from electronic annotation 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 1373948_at BG376678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376678 /DB_XREF=gi:13301150 /DB_XREF=UI-R-CU0-buq-f-05-0-UI.s1 /CLONE=UI-R-CU0-buq-f-05-0-UI /FEA=EST /CNT=10 /TID=Rn.22962.1 /TIER=Stack /STK=7 /UG=Rn.22962 /UG_TITLE=ESTs BG376678 alpha globin regulatory element containing gene Mare 360505 NM_001034936 1373949_at AI070113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070113 /DB_XREF=gi:3396364 /DB_XREF=UI-R-Y0-lu-b-08-0-UI.s1 /CLONE=UI-R-Y0-lu-b-08-0-UI /FEA=EST /CNT=10 /TID=Rn.19659.1 /TIER=Stack /STK=7 /UG=Rn.19659 /UG_TITLE=ESTs AI070113 ATPase type 13A2 Atp13a2 362645 NM_001173432 /// XM_001072145 /// XM_342962 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation 1373950_at AI598911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598911 /DB_XREF=gi:4607959 /DB_XREF=EST250614 /CLONE=REMDY51 /FEA=EST /CNT=10 /TID=Rn.13860.1 /TIER=Stack /STK=7 /UG=Rn.13860 /UG_TITLE=ESTs AI598911 1373951_at AI407792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407792 /DB_XREF=gi:4251296 /DB_XREF=EST236082 /CLONE=ROVEC52 /FEA=EST /CNT=10 /TID=Rn.3833.2 /TIER=Stack /STK=7 /UG=Rn.3833 /UG_TITLE=ESTs, Highly similar to transcription factor TFEB (M.musculus) AI407792 1373952_at AI409841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409841 /DB_XREF=gi:4253345 /DB_XREF=EST238134 /CLONE=RPLDM44 /FEA=EST /CNT=10 /TID=Rn.22357.1 /TIER=Stack /STK=7 /UG=Rn.22357 /UG_TITLE=ESTs AI409841 protein kinase, AMP-activated, gamma 2 non-catalytic subunit Prkag2 373545 NM_184051 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // not recorded /// 0006110 // regulation of glycolysis // inferred from electronic annotation /// 0006110 // regulation of glycolysis // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0010800 // positive regulation of peptidyl-threonine phosphorylation // inferred from electronic annotation /// 0010800 // positive regulation of peptidyl-threonine phosphorylation // not recorded /// 0019217 // regulation of fatty acid metabolic process // inferred from electronic annotation /// 0019217 // regulation of fatty acid metabolic process // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0046320 // regulation of fatty acid oxidation // not recorded /// 0050790 // regulation of catalytic activity // inferred from direct assay 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0031588 // AMP-activated protein kinase complex // inferred from direct assay /// 0031588 // AMP-activated protein kinase complex // inferred from mutant phenotype /// 0031588 // AMP-activated protein kinase complex // not recorded /// 0031588 // AMP-activated protein kinase complex // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004679 // AMP-activated protein kinase activity // inferred from direct assay /// 0004679 // AMP-activated protein kinase activity // inferred from mutant phenotype /// 0004862 // cAMP-dependent protein kinase inhibitor activity // inferred from electronic annotation /// 0004862 // cAMP-dependent protein kinase inhibitor activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from electronic annotation /// 0008603 // cAMP-dependent protein kinase regulator activity // not recorded /// 0008607 // phosphorylase kinase regulator activity // inferred from electronic annotation /// 0008607 // phosphorylase kinase regulator activity // not recorded /// 0016208 // AMP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0030295 // protein kinase activator activity // inferred from electronic annotation /// 0030295 // protein kinase activator activity // not recorded /// 0043531 // ADP binding // inferred from electronic annotation /// 0043531 // ADP binding // not recorded 1373953_at BI290779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290779 /DB_XREF=gi:14949677 /DB_XREF=UI-R-DK0-cga-c-09-0-UI.s1 /CLONE=UI-R-DK0-cga-c-09-0-UI /FEA=EST /CNT=10 /TID=Rn.36032.1 /TIER=Stack /STK=7 /UG=Rn.36032 /UG_TITLE=ESTs BI290779 0005622 // intracellular // inferred from electronic annotation 0003725 // double-stranded RNA binding // inferred from electronic annotation 1373954_at BG381520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381520 /DB_XREF=gi:13305992 /DB_XREF=UI-R-CT0-buk-c-06-0-UI.s1 /CLONE=UI-R-CT0-buk-c-06-0-UI /FEA=EST /CNT=10 /TID=Rn.65133.1 /TIER=Stack /STK=7 /UG=Rn.65133 /UG_TITLE=ESTs BG381520 Suppressor of defective silencing 3 homolog (S. cerevisiae) Suds3 360819 XM_001080131 /// XM_341092 0016481 // negative regulation of transcription // not recorded 0016580 // Sin3 complex // not recorded 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042826 // histone deacetylase binding // not recorded 1373955_at BI280339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280339 /DB_XREF=gi:14929025 /DB_XREF=UI-R-DE0-cag-g-09-0-UI.s1 /CLONE=UI-R-DE0-cag-g-09-0-UI /FEA=EST /CNT=25 /TID=Rn.8425.1 /TIER=Stack /STK=7 /UG=Rn.8425 /UG_TITLE=ESTs, Highly similar to IMB3_HUMAN IMPORTIN BETA-3 SUBUNIT (H.sapiens) BI280339 importin 5 Ipo5 306182 XM_001075101 /// XM_224534 0006886 // intracellular protein transport // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation 1373956_at BF284313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284313 /DB_XREF=gi:11215383 /DB_XREF=EST448904 /CLONE=RGIEO24 /FEA=EST /CNT=18 /TID=Rn.22678.1 /TIER=Stack /STK=7 /UG=Rn.22678 /UG_TITLE=ESTs, Weakly similar to T06D8.7.p (Caenorhabditis elegans) (C.elegans) BF284313 FUN14 domain containing 1 Fundc1 363442 NM_001025027 1373957_at BF281544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281544 /DB_XREF=gi:11212614 /DB_XREF=EST446135 /CLONE=RGIAM20 /FEA=EST /CNT=15 /TID=Rn.11927.1 /TIER=Stack /STK=7 /UG=Rn.11927 /UG_TITLE=ESTs BF281544 reelin Reln 24718 NM_080394 0000904 // cell morphogenesis involved in differentiation // not recorded /// 0000904 // cell morphogenesis involved in differentiation // inferred from sequence or structural similarity /// 0001764 // neuron migration // inferred from mutant phenotype /// 0001764 // neuron migration // not recorded /// 0001764 // neuron migration // inferred from sequence or structural similarity /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from sequence or structural similarity /// 0007417 // central nervous system development // not recorded /// 0007417 // central nervous system development // inferred from sequence or structural similarity /// 0007420 // brain development // inferred from mutant phenotype /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from sequence or structural similarity /// 0007494 // midgut development // inferred from expression pattern /// 0007613 // memory // inferred from expression pattern /// 0007626 // locomotory behavior // inferred from mutant phenotype /// 0007626 // locomotory behavior // not recorded /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009636 // response to toxin // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0010001 // glial cell differentiation // not recorded /// 0010001 // glial cell differentiation // inferred from sequence or structural similarity /// 0010226 // response to lithium ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0017085 // response to insecticide // inferred from expression pattern /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from sequence or structural similarity /// 0021511 // spinal cord patterning // inferred from expression pattern /// 0021511 // spinal cord patterning // not recorded /// 0021511 // spinal cord patterning // inferred from sequence or structural similarity /// 0021542 // dentate gyrus development // inferred from mutant phenotype /// 0021769 // orbitofrontal cortex development // inferred from expression pattern /// 0021800 // cerebral cortex tangential migration // not recorded /// 0021800 // cerebral cortex tangential migration // inferred from sequence or structural similarity /// 0021854 // hypothalamus development // inferred from expression pattern /// 0021987 // cerebral cortex development // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0035176 // social behavior // inferred from expression pattern /// 0042403 // thyroid hormone metabolic process // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from sequence or structural similarity /// 0048265 // response to pain // not recorded /// 0048265 // response to pain // inferred from sequence or structural similarity /// 0048678 // response to axon injury // inferred from expression pattern /// 0051057 // positive regulation of small GTPase mediated signal transduction // not recorded /// 0051057 // positive regulation of small GTPase mediated signal transduction // inferred from sequence or structural similarity /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0051602 // response to electrical stimulus // inferred from expression pattern /// 0070542 // response to fatty acid // inferred from expression pattern /// 0071549 // cellular response to dexamethasone stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030425 // dendrite // not recorded /// 0030425 // dendrite // inferred from sequence or structural similarity /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay 0004712 // protein serine/threonine/tyrosine kinase activity // not recorded /// 0004712 // protein serine/threonine/tyrosine kinase activity // inferred from sequence or structural similarity /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1373958_at AA943149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943149 /DB_XREF=gi:3103065 /DB_XREF=EST198648 /CLONE=RBRAF66 /FEA=EST /CNT=14 /TID=Rn.7346.1 /TIER=Stack /STK=7 /UG=Rn.7346 /UG_TITLE=ESTs, Weakly similar to T00084 hypothetical protein KIAA0512 (H.sapiens) AA943149 armadillo repeat containing, X-linked 3 Armcx3 367902 NM_001014273 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1373959_at AI411788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411788 /DB_XREF=gi:4255292 /DB_XREF=EST240082 /CLONE=RKIDR92 /FEA=EST /CNT=12 /TID=Rn.44047.1 /TIER=Stack /STK=7 /UG=Rn.44047 /UG_TITLE=ESTs AI411788 protein phosphatase 2 (formerly 2A), regulatory subunit A, beta isoform Ppp2r1b 315648 NM_001025418 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373960_at AI235631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235631 /DB_XREF=gi:3829137 /DB_XREF=EST232193 /CLONE=ROVCU39 /FEA=EST /CNT=12 /TID=Rn.6288.1 /TIER=Stack /STK=7 /UG=Rn.6288 /UG_TITLE=ESTs AI235631 transmembrane protein 120A Tmem120a 288591 NM_001010945 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1373961_at AI170410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170410 /DB_XREF=gi:3710450 /DB_XREF=EST216336 /CLONE=RLUCH92 /FEA=EST /CNT=11 /TID=Rn.19101.1 /TIER=Stack /STK=7 /UG=Rn.19101 /UG_TITLE=ESTs AI170410 similar to 4930453N24Rik protein MGC95208 304176 NM_001005552 0006915 // apoptosis // inferred from electronic annotation 1373962_at AI178556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178556 /DB_XREF=gi:3729194 /DB_XREF=EST222234 /CLONE=RPLCS68 /FEA=EST /CNT=11 /TID=Rn.16359.1 /TIER=Stack /STK=7 /UG=Rn.16359 /UG_TITLE=ESTs AI178556 ubiquitin specific peptidase 32 Usp32 303394 NM_001107032 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0005794 // Golgi apparatus // not recorded 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1373963_at BF284337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284337 /DB_XREF=gi:11215407 /DB_XREF=EST448928 /CLONE=RGIEO49 /FEA=EST /CNT=11 /TID=Rn.17659.1 /TIER=Stack /STK=7 /UG=Rn.17659 /UG_TITLE=ESTs, Weakly similar to REG2 DROME RHYTHMICALLY EXPRESSED GENE 2 PROTEIN (D.melanogaster) BF284337 haloacid dehalogenase-like hydrolase domain containing 3 Hdhd3 688746 NM_001109511 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008967 // phosphoglycolate phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1373964_at AA818815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818815 /DB_XREF=gi:4227489 /DB_XREF=UI-R-A0-ar-d-01-0-UI.s1 /CLONE=UI-R-A0-ar-d-01-0-UI /FEA=EST /CNT=11 /TID=Rn.22418.1 /TIER=Stack /STK=7 /UG=Rn.22418 /UG_TITLE=ESTs AA818815 glutaredoxin-like protein LOC100174910 100174910 NM_001131003 1373965_at BM385251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385251 /DB_XREF=gi:18185304 /DB_XREF=UI-R-EB1-clf-n-07-0-UI.s1 /CLONE=UI-R-EB1-clf-n-07-0-UI /FEA=EST /CNT=11 /TID=Rn.14668.1 /TIER=Stack /STK=7 /UG=Rn.14668 /UG_TITLE=ESTs BM385251 coiled-coil domain containing 124 Ccdc124 290642 NM_001106071 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1373966_at BF406242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406242 /DB_XREF=gi:11394217 /DB_XREF=UI-R-CA1-bjf-k-04-0-UI.s1 /CLONE=UI-R-CA1-bjf-k-04-0-UI /FEA=EST /CNT=11 /TID=Rn.27823.1 /TIER=Stack /STK=7 /UG=Rn.27823 /UG_TITLE=ESTs BF406242 retinoic acid induced 1 Rai1 303188 XM_001077437 /// XM_220520 0001501 // skeletal system development // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0040015 // negative regulation of multicellular organism growth // not recorded 0005634 // nucleus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1373967_at AI229311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229311 /DB_XREF=gi:3813198 /DB_XREF=EST226006 /CLONE=RBRDG79 /FEA=EST /CNT=11 /TID=Rn.3153.1 /TIER=Stack /STK=7 /UG=Rn.3153 /UG_TITLE=ESTs AI229311 1373968_at AI176016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176016 /DB_XREF=gi:3726654 /DB_XREF=EST219592 /CLONE=ROVBJ48 /FEA=EST /CNT=11 /TID=Rn.17323.1 /TIER=Stack /STK=7 /UG=Rn.17323 /UG_TITLE=ESTs AI176016 1373969_at AW143437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143437 /DB_XREF=gi:6163440 /DB_XREF=EST293837 /CLONE=RGIBU35 /FEA=EST /CNT=11 /TID=Rn.22384.1 /TIER=Stack /STK=7 /UG=Rn.22384 /UG_TITLE=ESTs, Moderately similar to ArgAbl-interacting protein ArgBP2 (Rattus norvegicus) (R.norvegicus) AW143437 sorbin and SH3 domain containing 3 Sorbs3 282843 NM_001005762 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006936 // muscle contraction // not recorded /// 0031589 // cell-substrate adhesion // not recorded /// 0031589 // cell-substrate adhesion // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0051496 // positive regulation of stress fiber assembly // not recorded /// 0051496 // positive regulation of stress fiber assembly // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0017166 // vinculin binding // not recorded /// 0017166 // vinculin binding // inferred from electronic annotation 1373970_at AI716248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716248 /DB_XREF=gi:5033501 /DB_XREF=UI-R-Y0-abr-e-10-0-UI.s1 /CLONE=UI-R-Y0-abr-e-10-0-UI /FEA=EST /CNT=10 /TID=Rn.1927.1 /TIER=Stack /STK=7 /UG=Rn.1927 /UG_TITLE=ESTs AI716248 interleukin 33 Il33 361749 NM_001014166 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373971_at BE115322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115322 /DB_XREF=gi:8507427 /DB_XREF=UI-R-CA0-axr-h-05-0-UI.s1 /CLONE=UI-R-CA0-axr-h-05-0-UI /FEA=EST /CNT=10 /TID=Rn.24844.1 /TIER=Stack /STK=7 /UG=Rn.24844 /UG_TITLE=ESTs BE115322 lysophosphatidylcholine acyltransferase 4 Lpcat4 296048 NM_001106494 0008152 // metabolic process // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation 1373972_at BF387266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387266 /DB_XREF=gi:11372090 /DB_XREF=UI-R-CA1-bbl-e-03-0-UI.s1 /CLONE=UI-R-CA1-bbl-e-03-0-UI /FEA=EST /CNT=10 /TID=Rn.45998.1 /TIER=Stack /STK=7 /UG=Rn.45998 /UG_TITLE=ESTs, Weakly similar to F45E10.1.p (Caenorhabditis elegans) (C.elegans) BF387266 similar to neuron navigator 1 LOC685707 685707 XR_006273 /// XR_085598 0000166 // nucleotide binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1373973_at AI169082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169082 /DB_XREF=gi:3705390 /DB_XREF=EST214912 /CLONE=RKIBM83 /FEA=EST /CNT=10 /TID=Rn.12427.1 /TIER=Stack /STK=7 /UG=Rn.12427 /UG_TITLE=ESTs, Highly similar to transcriptional regulator protein (Mus musculus) (M.musculus) AI169082 SAP30 binding protein Sap30bp 360662 NM_001108305 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373974_at BE110545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110545 /DB_XREF=gi:8502650 /DB_XREF=UI-R-BJ1-avt-c-06-0-UI.s1 /CLONE=UI-R-BJ1-avt-c-06-0-UI /FEA=EST /CNT=10 /TID=Rn.3563.1 /TIER=Stack /STK=7 /UG=Rn.3563 /UG_TITLE=ESTs BE110545 oxysterol binding protein Osbp 365410 NM_001108927 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation 1373975_at AI232716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232716 /DB_XREF=gi:3816596 /DB_XREF=EST229404 /CLONE=RKICF54 /FEA=EST /CNT=10 /TID=Rn.19133.1 /TIER=Stack /STK=7 /UG=Rn.19133 /UG_TITLE=ESTs, Weakly similar to 1617160A phenylethanolamine N-methyltransferase (R.norvegicus) AI232716 indolethylamine N-methyltransferase Inmt 368066 NM_001109022 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1373976_at BF396534 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396534 /DB_XREF=gi:11381508 /DB_XREF=UI-R-BS2-bdz-c-03-0-UI.s1 /CLONE=UI-R-BS2-bdz-c-03-0-UI /FEA=EST /CNT=10 /TID=Rn.8264.1 /TIER=Stack /STK=7 /UG=Rn.8264 /UG_TITLE=ESTs, Weakly similar to T00357 hypothetical protein KIAA0685 (H.sapiens) BF396534 SAPS domain family, member 2 Saps2 300146 NM_001106789 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373977_at BE108253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108253 /DB_XREF=gi:8500358 /DB_XREF=UI-R-BS1-ayx-b-06-0-UI.s1 /CLONE=UI-R-BS1-ayx-b-06-0-UI /FEA=EST /CNT=10 /TID=Rn.9300.1 /TIER=Stack /STK=7 /UG=Rn.9300 /UG_TITLE=ESTs BE108253 Kinesin family member 5C Kif5c 311024 NM_001107730 0007018 // microtubule-based movement // inferred from electronic annotation /// 0008045 // motor axon guidance // inferred from electronic annotation /// 0008045 // motor axon guidance // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0035253 // ciliary rootlet // inferred from electronic annotation /// 0035253 // ciliary rootlet // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0034190 // apolipoprotein receptor binding // inferred from physical interaction 1373978_at AI410277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410277 /DB_XREF=gi:4253781 /DB_XREF=EST238570 /CLONE=RKIEA33 /FEA=EST /CNT=10 /TID=Rn.13482.1 /TIER=Stack /STK=7 /UG=Rn.13482 /UG_TITLE=ESTs, Highly similar to S50082 nuclear cap binding protein (H.sapiens) AI410277 nuclear cap binding protein subunit 1, 80kDa Ncbp1 298075 NM_001014785 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // not recorded /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from sequence or structural similarity /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from electronic annotation /// 0000387 // spliceosomal snRNP assembly // not recorded /// 0006370 // mRNA capping // not recorded /// 0006370 // mRNA capping // inferred from sequence or structural similarity /// 0006370 // mRNA capping // inferred from electronic annotation /// 0006379 // mRNA cleavage // not recorded /// 0006379 // mRNA cleavage // inferred from sequence or structural similarity /// 0006379 // mRNA cleavage // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // not recorded /// 0006406 // mRNA export from nucleus // inferred from sequence or structural similarity /// 0006406 // mRNA export from nucleus // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // not recorded /// 0006446 // regulation of translational initiation // inferred from sequence or structural similarity /// 0006446 // regulation of translational initiation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0016070 // RNA metabolic process // inferred from electronic annotation /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0031442 // positive regulation of mRNA 3'-end processing // not recorded /// 0031442 // positive regulation of mRNA 3'-end processing // inferred from sequence or structural similarity /// 0031442 // positive regulation of mRNA 3'-end processing // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005845 // mRNA cap binding complex // not recorded /// 0005845 // mRNA cap binding complex // inferred from sequence or structural similarity /// 0005845 // mRNA cap binding complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1373979_at BF281977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281977 /DB_XREF=gi:11213047 /DB_XREF=EST446568 /CLONE=RGIDA29 /FEA=EST /CNT=10 /TID=Rn.17813.1 /TIER=Stack /STK=7 /UG=Rn.17813 /UG_TITLE=ESTs BF281977 1373980_at AW916138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916138 /DB_XREF=gi:8081856 /DB_XREF=EST347442 /CLONE=RGIDI53 /FEA=EST /CNT=10 /TID=Rn.16253.1 /TIER=Stack /STK=7 /UG=Rn.16253 /UG_TITLE=ESTs AW916138 similar to XPA binding protein 1 LOC688393 688393 NM_001127572 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1373981_at BI299720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299720 /DB_XREF=gi:14976000 /DB_XREF=UI-R-CV2-chw-e-02-0-UI.s1 /CLONE=UI-R-CV2-chw-e-02-0-UI /FEA=EST /CNT=10 /TID=Rn.20493.1 /TIER=Stack /STK=7 /UG=Rn.20493 /UG_TITLE=ESTs BI299720 1373982_at BM385377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385377 /DB_XREF=gi:18185430 /DB_XREF=UI-R-CN1-clv-o-10-0-UI.s1 /CLONE=UI-R-CN1-clv-o-10-0-UI /FEA=EST /CNT=10 /TID=Rn.16586.1 /TIER=Stack /STK=7 /UG=Rn.16586 /UG_TITLE=ESTs BM385377 similar to hypothetical protein RGD1306595 287554 NM_001025626 1373983_at AI168986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI168986 /DB_XREF=gi:3705294 /DB_XREF=EST214814 /CLONE=RKIBL52 /FEA=EST /CNT=10 /TID=Rn.15889.1 /TIER=Stack /STK=7 /UG=Rn.15889 /UG_TITLE=ESTs AI168986 arginine/serine-rich coiled-coil 2 Rsrc2 360807 NM_001014128 1373984_at AA850715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850715 /DB_XREF=gi:2938255 /DB_XREF=EST193483 /CLONE=ROVAJ84 /FEA=EST /CNT=10 /TID=Rn.7037.1 /TIER=Stack /STK=7 /UG=Rn.7037 /UG_TITLE=ESTs AA850715 solute carrier family 39 (zinc transporter), member 14 Slc39a14 306009 NM_001107275 0006826 // iron ion transport // not recorded /// 0006829 // zinc ion transport // not recorded /// 0015684 // ferrous iron transport // not recorded /// 0030001 // metal ion transport // inferred from electronic annotation /// 0034755 // iron ion transmembrane transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0071577 // zinc ion transmembrane transport // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005385 // zinc ion transmembrane transporter activity // not recorded /// 0015093 // ferrous iron transmembrane transporter activity // not recorded /// 0046873 // metal ion transmembrane transporter activity // inferred from electronic annotation 1373985_at BI282311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282311 /DB_XREF=gi:14932953 /DB_XREF=UI-R-CU0s-cbz-b-01-0-UI.s1 /CLONE=UI-R-CU0s-cbz-b-01-0-UI /FEA=EST /CNT=10 /TID=Rn.40876.1 /TIER=Stack /STK=7 /UG=Rn.40876 /UG_TITLE=ESTs BI282311 PNMA-like 2 Pnmal2 308393 NM_001107481 1373986_at AI410107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410107 /DB_XREF=gi:4253611 /DB_XREF=EST238400 /CLONE=RKIEA51 /FEA=EST /CNT=10 /TID=Rn.20036.1 /TIER=Stack /STK=7 /UG=Rn.20036 /UG_TITLE=ESTs AI410107 1373987_at AI410448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410448 /DB_XREF=gi:4253952 /DB_XREF=EST238741 /CLONE=RHECS10 /FEA=EST /CNT=10 /TID=Rn.9940.3 /TIER=Stack /STK=7 /UG=Rn.9940 /LL=117556 /UG_GENE=Sv2b /UG_TITLE=synaptic vesicle glycoprotein 2 b AI410448 Kv channel-interacting protein 2 Kcnip2 56817 NM_001033961 /// NM_020094 /// NM_020095 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0045163 // clustering of voltage-gated potassium channels // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0047485 // protein N-terminus binding // not recorded 1373988_at BM387458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387458 /DB_XREF=gi:18187511 /DB_XREF=UI-R-CN1-cjj-g-16-0-UI.s1 /CLONE=UI-R-CN1-cjj-g-16-0-UI /FEA=EST /CNT=10 /TID=Rn.54717.1 /TIER=Stack /STK=7 /UG=Rn.54717 /UG_TITLE=ESTs, Moderately similar to T13150 neuroblastoma-amplified protein (H.sapiens) BM387458 neuroblastoma-amplified protein-like LOC100365604 100365604 XM_002726684 1373989_at AI103943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103943 /DB_XREF=gi:3708408 /DB_XREF=EST213232 /CLONE=RHEBV43 /FEA=EST /CNT=10 /TID=Rn.26395.1 /TIER=Stack /STK=7 /UG=Rn.26395 /UG_TITLE=ESTs AI103943 Ras association (RalGDS/AF-6) domain family member 1 Rassf1 363140 NM_001007754 /// NM_001037555 0006974 // response to DNA damage stimulus // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded /// 0007265 // Ras protein signal transduction // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0050821 // protein stabilization // not recorded /// 0071157 // negative regulation of cell cycle arrest // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1373990_at AI411935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411935 /DB_XREF=gi:4255439 /DB_XREF=EST240229 /CLONE=RKIER35 /FEA=EST /CNT=10 /TID=Rn.34357.1 /TIER=Stack /STK=7 /UG=Rn.34357 /UG_TITLE=ESTs, Weakly similar to BAT1_RAT B(0,+)-TYPE AMINO ACID TRANSPORTER 1 (B(0,+)AT) (GLYCOPROTEIN-ASSOCIATED AMINO ACID TRANSPORTER B0,+AT1) (R.norvegicus) AI411935 similar to solute carrier family 7 (cationic amino acid transporter, y+ system), member 12 /// solute carrier family 7 (cationic amino acid transporter, y+ system), member 12 LOC361914 /// Slc7a12 294881 /// 361914 NM_001011948 /// NM_001017465 0003333 // amino acid transmembrane transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015171 // amino acid transmembrane transporter activity // not recorded 1373991_at AI411366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411366 /DB_XREF=gi:4254870 /DB_XREF=EST239660 /CLONE=RKIES17 /FEA=EST /CNT=9 /TID=Rn.23568.1 /TIER=Stack /STK=7 /UG=Rn.23568 /UG_TITLE=ESTs AI411366 1373992_at AI408440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408440 /DB_XREF=gi:4251944 /DB_XREF=EST236730 /CLONE=ROVEO24 /FEA=EST /CNT=9 /TID=Rn.34117.1 /TIER=Stack /STK=7 /UG=Rn.34117 /UG_TITLE=ESTs AI408440 similar to interferon-inducible GTPase MGC108823 307414 NM_001012353 0016020 // membrane // inferred from electronic annotation 0005525 // GTP binding // inferred from electronic annotation /// 0016817 // hydrolase activity, acting on acid anhydrides // inferred from electronic annotation 1373993_at AA799470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799470 /DB_XREF=gi:2862425 /DB_XREF=EST188967 /CLONE=RHEAB41 /FEA=EST /CNT=9 /TID=Rn.3573.1 /TIER=Stack /STK=7 /UG=Rn.3573 /UG_TITLE=ESTs AA799470 Small nuclear RNA activating complex, polypeptide 5 Snapc5 691501 NM_001109643 1373994_at BM388789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388789 /DB_XREF=gi:18188842 /DB_XREF=UI-R-DZ0-ckn-i-21-0-UI.s1 /CLONE=UI-R-DZ0-ckn-i-21-0-UI /FEA=EST /CNT=9 /TID=Rn.17901.1 /TIER=Stack /STK=7 /UG=Rn.17901 /UG_TITLE=ESTs BM388789 aprataxin and PNKP like factor Aplf 500247 NM_001173382 /// XM_001075022 /// XM_002726429 /// XM_002729393 /// XM_575597 0000012 // single strand break repair // not recorded /// 0006302 // double-strand break repair // not recorded /// 0006974 // response to DNA damage stimulus // not recorded 0005634 // nucleus // not recorded 0000166 // nucleotide binding // not recorded /// 0003906 // DNA-(apurinic or apyrimidinic site) lyase activity // not recorded /// 0004520 // endodeoxyribonuclease activity // not recorded /// 0005515 // protein binding // not recorded /// 0008408 // 3'-5' exonuclease activity // not recorded 1373995_at AW523571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523571 /DB_XREF=gi:7165956 /DB_XREF=UI-R-BO0-ahu-f-03-0-UI.s1 /CLONE=UI-R-BO0-ahu-f-03-0-UI /FEA=EST /CNT=9 /TID=Rn.24613.1 /TIER=Stack /STK=7 /UG=Rn.24613 /UG_TITLE=ESTs AW523571 ATP-binding cassette, sub-family G (WHITE), member 1 Abcg1 85264 NM_053502 0006810 // transport // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0010033 // response to organic substance // not recorded /// 0010872 // regulation of cholesterol esterification // inferred from electronic annotation /// 0010872 // regulation of cholesterol esterification // not recorded /// 0010875 // positive regulation of cholesterol efflux // inferred from electronic annotation /// 0010875 // positive regulation of cholesterol efflux // not recorded /// 0010888 // negative regulation of lipid storage // inferred from electronic annotation /// 0010888 // negative regulation of lipid storage // not recorded /// 0030301 // cholesterol transport // not recorded /// 0030301 // cholesterol transport // traceable author statement /// 0030301 // cholesterol transport // inferred from electronic annotation /// 0032367 // intracellular cholesterol transport // not recorded /// 0033344 // cholesterol efflux // not recorded /// 0033344 // cholesterol efflux // inferred from electronic annotation /// 0033700 // phospholipid efflux // not recorded /// 0033993 // response to lipid // not recorded /// 0034374 // low-density lipoprotein particle remodeling // inferred from electronic annotation /// 0034374 // low-density lipoprotein particle remodeling // not recorded /// 0034375 // high-density lipoprotein particle remodeling // inferred from electronic annotation /// 0034375 // high-density lipoprotein particle remodeling // not recorded /// 0034436 // glycoprotein transport // not recorded /// 0042632 // cholesterol homeostasis // not recorded /// 0042987 // amyloid precursor protein catabolic process // not recorded /// 0043691 // reverse cholesterol transport // inferred from electronic annotation /// 0043691 // reverse cholesterol transport // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045542 // positive regulation of cholesterol biosynthetic process // inferred from electronic annotation /// 0045542 // positive regulation of cholesterol biosynthetic process // not recorded /// 0055091 // phospholipid homeostasis // not recorded /// 0055099 // response to high density lipoprotein stimulus // inferred from electronic annotation /// 0055099 // response to high density lipoprotein stimulus // not recorded 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from electronic annotation /// 0055037 // recycling endosome // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005548 // phospholipid transporter activity // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0017127 // cholesterol transporter activity // not recorded /// 0019534 // toxin transporter activity // not recorded /// 0034041 // sterol-transporting ATPase activity // not recorded /// 0034437 // glycoprotein transporter activity // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043531 // ADP binding // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1373996_at AI236940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236940 /DB_XREF=gi:3830446 /DB_XREF=EST233502 /CLONE=ROVDM66 /FEA=EST /CNT=9 /TID=Rn.11426.1 /TIER=Stack /STK=7 /UG=Rn.11426 /UG_TITLE=ESTs AI236940 gene trap locus F3b Gtlf3b 363614 NM_001170541 /// XM_001077688 /// XM_343907 1373997_at AA925118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925118 /DB_XREF=gi:4236309 /DB_XREF=UI-R-A1-ei-d-01-0-UI.s1 /CLONE=UI-R-A1-ei-d-01-0-UI /FEA=EST /CNT=9 /TID=Rn.8670.1 /TIER=Stack /STK=7 /UG=Rn.8670 /UG_TITLE=ESTs AA925118 1373998_at BM389853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389853 /DB_XREF=gi:18189911 /DB_XREF=UI-R-CN1-cjp-p-23-0-UI.s1 /CLONE=UI-R-CN1-cjp-p-23-0-UI /FEA=EST /CNT=9 /TID=Rn.25470.1 /TIER=Stack /STK=7 /UG=Rn.25470 /UG_TITLE=ESTs BM389853 1373999_at AI406350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406350 /DB_XREF=gi:4249854 /DB_XREF=EST234636 /CLONE=RBRDM21 /FEA=EST /CNT=9 /TID=Rn.8674.1 /TIER=Stack /STK=7 /UG=Rn.8674 /UG_TITLE=ESTs AI406350 1374000_at BI285893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285893 /DB_XREF=gi:14939995 /DB_XREF=UI-R-CX0s-ccp-a-12-0-UI.s1 /CLONE=UI-R-CX0s-ccp-a-12-0-UI /FEA=EST /CNT=9 /TID=Rn.19942.1 /TIER=Stack /STK=7 /UG=Rn.19942 /UG_TITLE=ESTs, Moderately similar to Y054_HUMAN HYPOTHETICAL PROTEIN KIAA0054 (H.sapiens) BI285893 helicase with zinc finger Helz 287773 NM_001105848 0006281 // DNA repair // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374001_at AA851818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851818 /DB_XREF=gi:2939358 /DB_XREF=EST194586 /CLONE=RSPAN12 /FEA=EST /CNT=9 /TID=Rn.4081.1 /TIER=Stack /STK=7 /UG=Rn.4081 /UG_TITLE=ESTs AA851818 1374002_at AI045904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045904 /DB_XREF=gi:3292723 /DB_XREF=UI-R-C0-jq-f-05-0-UI.s2 /CLONE=UI-R-C0-jq-f-05-0-UI /FEA=EST /CNT=9 /TID=Rn.18346.1 /TIER=Stack /STK=7 /UG=Rn.18346 /UG_TITLE=ESTs AI045904 hypothetical protein LOC100192313 LOC100192313 100192313 NM_001136261 1374003_at BM389589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389589 /DB_XREF=gi:18189642 /DB_XREF=UI-R-CN1-cjn-p-08-0-UI.s1 /CLONE=UI-R-CN1-cjn-p-08-0-UI /FEA=EST /CNT=9 /TID=Rn.32524.1 /TIER=Stack /STK=7 /UG=Rn.32524 /UG_TITLE=ESTs BM389589 1374004_at BM387902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387902 /DB_XREF=gi:18187955 /DB_XREF=UI-R-CN1-cjk-n-19-0-UI.s1 /CLONE=UI-R-CN1-cjk-n-19-0-UI /FEA=EST /CNT=9 /TID=Rn.24015.1 /TIER=Stack /STK=7 /UG=Rn.24015 /UG_TITLE=ESTs BM387902 prolyl endopeptidase-like Prepl 298771 NM_001010951 0006508 // proteolysis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1374005_at AI233232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233232 /DB_XREF=gi:3817112 /DB_XREF=EST229920 /CLONE=RKIDC51 /FEA=EST /CNT=9 /TID=Rn.11428.1 /TIER=Stack /STK=7 /UG=Rn.11428 /UG_TITLE=ESTs AI233232 coiled-coil domain containing 51 Ccdc51 316008 NM_001014098 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1374006_at BI295878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295878 /DB_XREF=gi:14959765 /DB_XREF=UI-R-DK0-cfb-g-06-0-UI.s1 /CLONE=UI-R-DK0-cfb-g-06-0-UI /FEA=EST /CNT=9 /TID=Rn.28263.1 /TIER=Stack /STK=7 /UG=Rn.28263 /UG_TITLE=ESTs, Weakly similar to S48737 kynurenine aminotransferase - rat (R.norvegicus) BI295878 kynurenine aminotransferase III /// kynurenine aminotransferase III-like Kat3 /// LOC100361841 100361841 /// 541589 NM_001015037 /// XM_002729124 0006520 // cellular amino acid metabolic process // inferred from sequence or structural similarity /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0070189 // kynurenine metabolic process // inferred from sequence or structural similarity 0003824 // catalytic activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016212 // kynurenine-oxoglutarate transaminase activity // inferred from sequence or structural similarity /// 0016212 // kynurenine-oxoglutarate transaminase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016847 // 1-aminocyclopropane-1-carboxylate synthase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0047315 // kynurenine-glyoxylate transaminase activity // inferred from sequence or structural similarity /// 0047315 // kynurenine-glyoxylate transaminase activity // inferred from electronic annotation /// 0047804 // cysteine-S-conjugate beta-lyase activity // inferred from electronic annotation 1374007_at AI178499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178499 /DB_XREF=gi:3729137 /DB_XREF=EST222173 /CLONE=RPLCR81 /FEA=EST /CNT=9 /TID=Rn.29232.1 /TIER=Stack /STK=7 /UG=Rn.29232 /UG_TITLE=ESTs AI178499 SLU7 splicing factor homolog (S. cerevisiae) Slu7 303057 NM_001100550 0000375 // RNA splicing, via transesterification reactions // not recorded /// 0000375 // RNA splicing, via transesterification reactions // inferred from sequence or structural similarity /// 0000375 // RNA splicing, via transesterification reactions // inferred from electronic annotation /// 0000380 // alternative nuclear mRNA splicing, via spliceosome // not recorded /// 0000380 // alternative nuclear mRNA splicing, via spliceosome // inferred from sequence or structural similarity /// 0000380 // alternative nuclear mRNA splicing, via spliceosome // inferred from electronic annotation /// 0000389 // nuclear mRNA 3'-splice site recognition // not recorded /// 0000389 // nuclear mRNA 3'-splice site recognition // inferred from sequence or structural similarity /// 0000389 // nuclear mRNA 3'-splice site recognition // inferred from electronic annotation /// 0001558 // regulation of cell growth // inferred from mutant phenotype /// 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008380 // RNA splicing // inferred from electronic annotation /// 0045143 // homologous chromosome segregation // inferred from electronic annotation /// 0051276 // chromosome organization // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded /// 0005681 // spliceosomal complex // inferred from sequence or structural similarity /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded /// 0016607 // nuclear speck // inferred from sequence or structural similarity /// 0016607 // nuclear speck // inferred from electronic annotation /// 0030532 // small nuclear ribonucleoprotein complex // not recorded /// 0030532 // small nuclear ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030532 // small nuclear ribonucleoprotein complex // inferred from electronic annotation 0000386 // second spliceosomal transesterification activity // not recorded /// 0000386 // second spliceosomal transesterification activity // inferred from sequence or structural similarity /// 0000386 // second spliceosomal transesterification activity // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0030628 // pre-mRNA 3'-splice site binding // not recorded /// 0030628 // pre-mRNA 3'-splice site binding // inferred from sequence or structural similarity /// 0030628 // pre-mRNA 3'-splice site binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from physical interaction /// 0043022 // ribosome binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1374008_at BI296700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296700 /DB_XREF=gi:14961389 /DB_XREF=UI-R-CV2-cgv-c-09-0-UI.s1 /CLONE=UI-R-CV2-cgv-c-09-0-UI /FEA=EST /CNT=9 /TID=Rn.41405.1 /TIER=Stack /STK=7 /UG=Rn.41405 /UG_TITLE=ESTs, Weakly similar to A31219 collagen 1 - Caenorhabditis elegans (C.elegans) BI296700 1374009_at BI282615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282615 /DB_XREF=gi:14933561 /DB_XREF=UI-R-CW0s-ccd-b-04-0-UI.s1 /CLONE=UI-R-CW0s-ccd-b-04-0-UI /FEA=EST /CNT=9 /TID=Rn.23864.1 /TIER=Stack /STK=7 /UG=Rn.23864 /UG_TITLE=ESTs BI282615 family with sequence similarity 133, member B Fam133b 362320 NM_001024799 1374010_at BI275032 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275032 /DB_XREF=gi:14886498 /DB_XREF=UI-R-CX0-bwt-h-04-0-UI.s1 /CLONE=UI-R-CX0-bwt-h-04-0-UI /FEA=EST /CNT=9 /TID=Rn.2591.1 /TIER=Stack /STK=7 /UG=Rn.2591 /UG_TITLE=ESTs BI275032 1374011_at BM388758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388758 /DB_XREF=gi:18188811 /DB_XREF=UI-R-DZ0-ckn-c-09-0-UI.s1 /CLONE=UI-R-DZ0-ckn-c-09-0-UI /FEA=EST /CNT=9 /TID=Rn.44012.1 /TIER=Stack /STK=7 /UG=Rn.44012 /UG_TITLE=ESTs, Highly similar to DNA-REPAIR PROTEIN COMPLEMENTING XP-B CELLS HOMOLOG (M.musculus) BM388758 excision repair cross-complementing rodent repair deficiency, complementation group 3 Ercc3 291703 NM_001031644 0000075 // cell cycle checkpoint // inferred from electronic annotation /// 0000075 // cell cycle checkpoint // not recorded /// 0000717 // nucleotide-excision repair, DNA duplex unwinding // inferred from electronic annotation /// 0000717 // nucleotide-excision repair, DNA duplex unwinding // not recorded /// 0000718 // nucleotide-excision repair, DNA damage removal // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0006200 // ATP catabolic process // inferred from direct assay /// 0006265 // DNA topological change // inferred from electronic annotation /// 0006265 // DNA topological change // not recorded /// 0006281 // DNA repair // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006283 // transcription-coupled nucleotide-excision repair // inferred from electronic annotation /// 0006283 // transcription-coupled nucleotide-excision repair // not recorded /// 0006289 // nucleotide-excision repair // not recorded /// 0006289 // nucleotide-excision repair // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0009411 // response to UV // not recorded /// 0009411 // response to UV // inferred from electronic annotation /// 0009650 // UV protection // inferred from electronic annotation /// 0009650 // UV protection // not recorded /// 0033683 // nucleotide-excision repair, DNA incision // inferred from electronic annotation /// 0033683 // nucleotide-excision repair, DNA incision // not recorded /// 0035315 // hair cell differentiation // inferred from electronic annotation /// 0035315 // hair cell differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0000441 // SSL2-core TFIIH complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005675 // holo TFIIH complex // not recorded /// 0005675 // holo TFIIH complex // inferred from sequence or structural similarity /// 0005675 // holo TFIIH complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // inferred from direct assay /// 0004003 // ATP-dependent DNA helicase activity // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0008094 // DNA-dependent ATPase activity // inferred from sequence or structural similarity /// 0008094 // DNA-dependent ATPase activity // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from direct assay /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // not recorded /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from sequence or structural similarity /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0016887 // ATPase activity // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0032564 // dATP binding // inferred from direct assay /// 0042277 // peptide binding // inferred from direct assay /// 0043138 // 3'-5' DNA helicase activity // inferred from electronic annotation /// 0043138 // 3'-5' DNA helicase activity // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1374012_at AI171372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171372 /DB_XREF=gi:3711412 /DB_XREF=EST217328 /CLONE=RMUBJ84 /FEA=EST /CNT=9 /TID=Rn.6456.1 /TIER=Stack /STK=7 /UG=Rn.6456 /UG_TITLE=ESTs AI171372 synaptophysin-like 2 Sypl2 362018 NM_001108563 0006810 // transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1374013_at BI278078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278078 /DB_XREF=gi:14924574 /DB_XREF=UI-R-CZ0-byd-a-10-0-UI.s1 /CLONE=UI-R-CZ0-byd-a-10-0-UI /FEA=EST /CNT=9 /TID=Rn.11572.1 /TIER=Stack /STK=7 /UG=Rn.11572 /UG_TITLE=ESTs, Highly similar to T14782 hypothetical protein DKFZp586B0621.1 (H.sapiens) BI278078 C1q and tumor necrosis factor related protein 5 C1qtnf5 315598 NM_001012123 0005576 // extracellular region // inferred from electronic annotation 1374014_at AI410079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410079 /DB_XREF=gi:4253583 /DB_XREF=EST238372 /CLONE=RPLDH89 /FEA=EST /CNT=9 /TID=Rn.6707.1 /TIER=Stack /STK=7 /UG=Rn.6707 /UG_TITLE=ESTs AI410079 neutral sphingomyelinase (N-SMase) activation associated factor Nsmaf 353233 NM_181389 0006917 // induction of apoptosis // inferred from mutant phenotype 0016230 // sphingomyelin phosphodiesterase activator activity // inferred from mutant phenotype 1374015_at BF281697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281697 /DB_XREF=gi:11212767 /DB_XREF=EST446288 /CLONE=RGIAP26 /FEA=EST /CNT=9 /TID=Rn.7770.1 /TIER=Stack /STK=7 /UG=Rn.7770 /UG_TITLE=ESTs BF281697 1374016_at AI502597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502597 /DB_XREF=gi:4400448 /DB_XREF=UI-R-C2-nl-b-12-0-UI.s1 /CLONE=UI-R-C2-nl-b-12-0-UI /FEA=EST /CNT=9 /TID=Rn.23581.1 /TIER=Stack /STK=7 /UG=Rn.23581 /UG_TITLE=ESTs AI502597 lysophosphatidic acid receptor 1 Lpar1 116744 NM_053936 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0010942 // positive regulation of cell death // inferred from mutant phenotype /// 0010977 // negative regulation of neuron projection development // inferred from mutant phenotype /// 0022008 // neurogenesis // inferred from expression pattern /// 0032060 // bleb assembly // inferred from electronic annotation /// 0032060 // bleb assembly // not recorded /// 0035025 // positive regulation of Rho protein signal transduction // inferred from electronic annotation /// 0035025 // positive regulation of Rho protein signal transduction // not recorded /// 0042552 // myelination // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // inferred from direct assay /// 0060999 // positive regulation of dendritic spine development // inferred from direct assay /// 0071453 // cellular response to oxygen levels // inferred from expression pattern /// 0071673 // positive regulation of smooth muscle cell chemotaxis // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // not recorded /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay 0001619 // lysosphingolipid and lysophosphatidic acid receptor activity // inferred from direct assay /// 0001619 // lysosphingolipid and lysophosphatidic acid receptor activity // inferred from mutant phenotype /// 0001619 // lysosphingolipid and lysophosphatidic acid receptor activity // not recorded /// 0001619 // lysosphingolipid and lysophosphatidic acid receptor activity // inferred from electronic annotation /// 0001965 // G-protein alpha-subunit binding // inferred from mutant phenotype /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005543 // phospholipid binding // inferred from direct assay /// 0005543 // phospholipid binding // inferred from mutant phenotype /// 0030165 // PDZ domain binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // not recorded 1374017_at BI289517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289517 /DB_XREF=gi:14947171 /DB_XREF=UI-R-DK0-cff-a-04-0-UI.s1 /CLONE=UI-R-DK0-cff-a-04-0-UI /FEA=EST /CNT=9 /TID=Rn.23565.1 /TIER=Stack /STK=7 /UG=Rn.23565 /UG_TITLE=ESTs BI289517 tripartite motif-containing 72 Trim72 365377 NM_001077675 0001778 // plasma membrane repair // not recorded /// 0001778 // plasma membrane repair // inferred from sequence or structural similarity /// 0001778 // plasma membrane repair // inferred from electronic annotation /// 0003012 // muscle system process // not recorded /// 0003012 // muscle system process // inferred from sequence or structural similarity /// 0003012 // muscle system process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0007517 // muscle organ development // not recorded /// 0007517 // muscle organ development // inferred from sequence or structural similarity /// 0007517 // muscle organ development // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded /// 0051260 // protein homooligomerization // inferred from sequence or structural similarity /// 0051260 // protein homooligomerization // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // not recorded /// 0030659 // cytoplasmic vesicle membrane // inferred from sequence or structural similarity /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042383 // sarcolemma // not recorded /// 0042383 // sarcolemma // inferred from sequence or structural similarity /// 0042383 // sarcolemma // inferred from electronic annotation 0001786 // phosphatidylserine binding // not recorded /// 0001786 // phosphatidylserine binding // inferred from sequence or structural similarity /// 0001786 // phosphatidylserine binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374018_at AA851212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851212 /DB_XREF=gi:2938752 /DB_XREF=EST193980 /CLONE=RPLAD86 /FEA=EST /CNT=9 /TID=Rn.866.1 /TIER=Stack /STK=7 /UG=Rn.866 /UG_TITLE=ESTs, Moderately similar to AC004882 7 similar to CAA16821 (H.sapiens) AA851212 activating signal cointegrator 1 complex subunit 2 Ascc2 498402 NM_001109091 1374019_at BF284939 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284939 /DB_XREF=gi:11216009 /DB_XREF=EST449530 /CLONE=RGIEX92 /FEA=EST /CNT=9 /TID=Rn.7256.1 /TIER=Stack /STK=7 /UG=Rn.7256 /UG_TITLE=ESTs BF284939 RGD1564379 RGD1564379 499758 NM_001126295 1374020_at BF281893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281893 /DB_XREF=gi:11212963 /DB_XREF=EST446484 /CLONE=RGIBH72 /FEA=EST /CNT=9 /TID=Rn.22420.1 /TIER=Stack /STK=7 /UG=Rn.22420 /UG_TITLE=ESTs BF281893 leucine rich repeat containing 38 Lrrc38 313681 NM_001107991 0005515 // protein binding // inferred from electronic annotation 1374021_at BI299233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299233 /DB_XREF=gi:14975513 /DB_XREF=UI-R-CV2-chs-g-08-0-UI.s1 /CLONE=UI-R-CV2-chs-g-08-0-UI /FEA=EST /CNT=9 /TID=Rn.29303.1 /TIER=Stack /STK=7 /UG=Rn.29303 /UG_TITLE=ESTs, Weakly similar to T12539 hypothetical protein DKFZp434J154.1 (H.sapiens) BI299233 WD repeat domain, phosphoinositide interacting 1 Wipi1 303630 NM_001127297 0006914 // autophagy // inferred from electronic annotation /// 0006914 // autophagy // not recorded /// 0048203 // vesicle targeting, trans-Golgi to endosome // inferred from electronic annotation /// 0048203 // vesicle targeting, trans-Golgi to endosome // not recorded 0000407 // pre-autophagosomal structure // not recorded /// 0000407 // pre-autophagosomal structure // inferred from electronic annotation /// 0000421 // autophagic vacuole membrane // inferred from electronic annotation /// 0000421 // autophagic vacuole membrane // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0010008 // endosome membrane // not recorded /// 0034045 // pre-autophagosomal structure membrane // inferred from electronic annotation /// 0034045 // pre-autophagosomal structure membrane // not recorded 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0030331 // estrogen receptor binding // inferred from electronic annotation /// 0030331 // estrogen receptor binding // not recorded /// 0032266 // phosphatidylinositol-3-phosphate binding // inferred from electronic annotation /// 0032266 // phosphatidylinositol-3-phosphate binding // not recorded /// 0050681 // androgen receptor binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // not recorded 1374022_at AI406707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406707 /DB_XREF=gi:4250211 /DB_XREF=EST234994 /CLONE=ROVDV56 /FEA=EST /CNT=9 /TID=Rn.18035.1 /TIER=Stack /STK=7 /UG=Rn.18035 /UG_TITLE=ESTs AI406707 1374023_at AI071195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071195 /DB_XREF=gi:3397410 /DB_XREF=UI-R-C2-my-h-06-0-UI.s1 /CLONE=UI-R-C2-my-h-06-0-UI /FEA=EST /CNT=9 /TID=Rn.20460.1 /TIER=Stack /STK=7 /UG=Rn.20460 /UG_TITLE=ESTs AI071195 1374024_at AA893640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893640 /DB_XREF=gi:4132314 /DB_XREF=EST197443 /CLONE=RPLAC89 /FEA=EST /CNT=9 /TID=Rn.30146.1 /TIER=Stack /STK=7 /UG=Rn.30146 /UG_TITLE=ESTs AA893640 hypothetical protein LOC688211 LOC688211 688211 XM_001081514 1374025_at AA963282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963282 /DB_XREF=gi:4278206 /DB_XREF=UI-R-E1-gh-h-06-0-UI.s1 /CLONE=UI-R-E1-gh-h-06-0-UI /FEA=EST /CNT=9 /TID=Rn.11431.1 /TIER=Stack /STK=7 /UG=Rn.11431 /UG_TITLE=ESTs AA963282 nicotinamide nucleotide adenylyltransferase 3 Nmnat3 363118 NM_001013224 0009058 // biosynthetic process // inferred from electronic annotation /// 0009435 // NAD biosynthetic process // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1374026_at BI288745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288745 /DB_XREF=gi:14945625 /DB_XREF=UI-R-DK0-cde-d-11-0-UI.s1 /CLONE=UI-R-DK0-cde-d-11-0-UI /FEA=EST /CNT=9 /TID=Rn.6685.1 /TIER=Stack /STK=7 /UG=Rn.6685 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) BI288745 similar to zinc finger protein 341 LOC296300 296300 NM_001047859 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1374027_at AI071243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071243 /DB_XREF=gi:3397458 /DB_XREF=UI-R-C2-nb-d-02-0-UI.s1 /CLONE=UI-R-C2-nb-d-02-0-UI /FEA=EST /CNT=9 /TID=Rn.20480.1 /TIER=Stack /STK=7 /UG=Rn.20480 /UG_TITLE=ESTs AI071243 zinc finger protein 187 Zfp187 266792 XM_001060246 /// XM_002725277 /// XM_002728484 /// XM_577579 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374028_at AI412665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412665 /DB_XREF=gi:4256169 /DB_XREF=EST240964 /CLONE=RBRDK88 /FEA=EST /CNT=9 /TID=Rn.21500.1 /TIER=Stack /STK=7 /UG=Rn.21500 /UG_TITLE=ESTs AI412665 similar to CDNA sequence BC024479 LOC500974 500974 XR_005433 /// XR_009636 1374029_at AI229596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229596 /DB_XREF=gi:3813483 /DB_XREF=EST226291 /CLONE=REMCJ10 /FEA=EST /CNT=9 /TID=Rn.8985.1 /TIER=Stack /STK=7 /UG=Rn.8985 /UG_TITLE=ESTs AI229596 rCG54747-like LOC100365118 100365118 XM_002726520 1374030_at BE100868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100868 /DB_XREF=gi:8492768 /DB_XREF=UI-R-BJ1-atx-c-06-0-UI.s1 /CLONE=UI-R-BJ1-atx-c-06-0-UI /FEA=EST /CNT=9 /TID=Rn.11451.1 /TIER=Stack /STK=7 /UG=Rn.11451 /UG_TITLE=ESTs BE100868 1374031_at BI295824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295824 /DB_XREF=gi:14959658 /DB_XREF=UI-R-DK0-cfb-a-12-0-UI.s1 /CLONE=UI-R-DK0-cfb-a-12-0-UI /FEA=EST /CNT=9 /TID=Rn.40071.1 /TIER=Stack /STK=7 /UG=Rn.40071 /UG_TITLE=ESTs, Highly similar to T34522 hypothetical protein DKFZp566D244.1 (H.sapiens) BI295824 poly (ADP-ribose) polymerase family, member 6 Parp6 300759 NM_001106828 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from electronic annotation 1374032_at AA998886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998886 /DB_XREF=gi:4281063 /DB_XREF=UI-R-C0-hp-b-03-0-UI.s1 /CLONE=UI-R-C0-hp-b-03-0-UI /FEA=EST /CNT=9 /TID=Rn.13153.1 /TIER=Stack /STK=7 /UG=Rn.13153 /UG_TITLE=ESTs AA998886 PHD finger protein 12 Phf12 303274 NM_001013117 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0017053 // transcriptional repressor complex // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1374033_at BG373505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373505 /DB_XREF=gi:13270042 /DB_XREF=UI-R-CS0-bsd-e-11-0-UI.s1 /CLONE=UI-R-CS0-bsd-e-11-0-UI /FEA=EST /CNT=9 /TID=Rn.24968.1 /TIER=Stack /STK=7 /UG=Rn.24968 /UG_TITLE=ESTs, Weakly similar to proteasome (prosome, macropain) subunit, beta type, 7 (Rattus norvegicus) (R.norvegicus) BG373505 proteasome (prosome, macropain) subunit, beta type 10 Psmb10 291983 NM_001025637 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005839 // proteasome core complex // inferred from electronic annotation 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1374034_at BG379410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379410 /DB_XREF=gi:13303882 /DB_XREF=UI-R-CS0-btg-e-10-0-UI.s1 /CLONE=UI-R-CS0-btg-e-10-0-UI /FEA=EST /CNT=9 /TID=Rn.14865.1 /TIER=Stack /STK=7 /UG=Rn.14865 /UG_TITLE=ESTs BG379410 cysteinyl-tRNA synthetase Cars 293638 NM_001106319 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006423 // cysteinyl-tRNA aminoacylation // inferred from electronic annotation /// 0006423 // cysteinyl-tRNA aminoacylation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0000049 // tRNA binding // not recorded /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004817 // cysteine-tRNA ligase activity // inferred from electronic annotation /// 0004817 // cysteine-tRNA ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1374035_at BI296482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296482 /DB_XREF=gi:14960948 /DB_XREF=UI-R-CV2-cgr-f-11-0-UI.s1 /CLONE=UI-R-CV2-cgr-f-11-0-UI /FEA=EST /CNT=9 /TID=Rn.39041.1 /TIER=Stack /STK=7 /UG=Rn.39041 /UG_TITLE=ESTs BI296482 RAS (RAD and GEM) like GTP binding 2 Rem2 64626 NM_022685 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation 1374036_at AI229508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229508 /DB_XREF=gi:3813395 /DB_XREF=EST226203 /CLONE=REMCH45 /FEA=EST /CNT=9 /TID=Rn.2715.1 /TIER=Stack /STK=7 /UG=Rn.2715 /UG_TITLE=ESTs AI229508 minichromosome maintenance complex component 2 Mcm2 312538 NM_001107873 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded /// 0006268 // DNA unwinding involved in replication // not recorded /// 0006270 // DNA-dependent DNA replication initiation // inferred from electronic annotation /// 0006334 // nucleosome assembly // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005664 // nuclear origin of replication recognition complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003688 // DNA replication origin binding // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1374037_at BI288699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288699 /DB_XREF=gi:14945540 /DB_XREF=UI-R-DK0-cdd-h-10-0-UI.s1 /CLONE=UI-R-DK0-cdd-h-10-0-UI /FEA=EST /CNT=9 /TID=Rn.11513.1 /TIER=Stack /STK=7 /UG=Rn.11513 /UG_TITLE=ESTs BI288699 similar to 1110008L16Rik protein RGD1305089 299050 NM_001106730 0008033 // tRNA processing // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation 1374038_at AA799964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799964 /DB_XREF=gi:2862919 /DB_XREF=EST189461 /CLONE=RHEAH66 /FEA=EST /CNT=9 /TID=Rn.6261.1 /TIER=Stack /STK=7 /UG=Rn.6261 /UG_TITLE=ESTs AA799964 1374039_at BI289989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289989 /DB_XREF=gi:14948131 /DB_XREF=UI-R-DK0-cfq-e-09-0-UI.s1 /CLONE=UI-R-DK0-cfq-e-09-0-UI /FEA=EST /CNT=9 /TID=Rn.22160.1 /TIER=Stack /STK=7 /UG=Rn.22160 /UG_TITLE=ESTs, Moderately similar to CAHE MOUSE CARBONIC ANHYDRASE XIV PRECURSOR (M.musculus) BI289989 carbonic anhydrase 14 Car14 791259 NM_001109655 1374040_at BI286772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286772 /DB_XREF=gi:14941738 /DB_XREF=UI-R-CT0s-car-f-06-0-UI.s1 /CLONE=UI-R-CT0s-car-f-06-0-UI /FEA=EST /CNT=9 /TID=Rn.2241.1 /TIER=Stack /STK=7 /UG=Rn.2241 /UG_TITLE=ESTs BI286772 NIMA (never in mitosis gene a)- related kinase 9 Nek9 299204 NM_001106747 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1374041_at AW528468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528468 /DB_XREF=gi:7170882 /DB_XREF=UI-R-BO1-ajl-g-03-0-UI.s1 /CLONE=UI-R-BO1-ajl-g-03-0-UI /FEA=EST /CNT=9 /TID=Rn.22263.1 /TIER=Stack /STK=7 /UG=Rn.22263 /UG_TITLE=ESTs AW528468 similar to Protein C20orf29 RGD1561852 499893 NM_001134618 1374042_at BG378161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378161 /DB_XREF=gi:13302633 /DB_XREF=UI-R-CV1-bvo-f-11-0-UI.s1 /CLONE=UI-R-CV1-bvo-f-11-0-UI /FEA=EST /CNT=9 /TID=Rn.12129.1 /TIER=Stack /STK=7 /UG=Rn.12129 /UG_TITLE=ESTs BG378161 similar to hypothetical protein FLJ23451 RGD1310453 299521 NM_001134463 1374043_at AI317841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI317841 /DB_XREF=gi:4033108 /DB_XREF=EST234512 /CLONE=RPPAA53 /FEA=EST /CNT=9 /TID=Rn.16174.1 /TIER=Stack /STK=7 /UG=Rn.16174 /UG_TITLE=ESTs AI317841 GRAM domain containing 3 Gramd3 307288 NM_001014011 1374044_at AA850698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850698 /DB_XREF=gi:2938238 /DB_XREF=EST193466 /CLONE=ROVAJ64 /FEA=EST /CNT=9 /TID=Rn.1142.1 /TIER=Stack /STK=7 /UG=Rn.1142 /UG_TITLE=ESTs AA850698 similar to stimulated by retinoic acid 13 LOC688314 688314 XM_001081840 1374045_at AI598851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598851 /DB_XREF=gi:4607899 /DB_XREF=EST250554 /CLONE=REMDX17 /FEA=EST /CNT=9 /TID=Rn.3024.1 /TIER=Stack /STK=7 /UG=Rn.3024 /UG_TITLE=ESTs, Weakly similar to R02D3.2.p (Caenorhabditis elegans) (C.elegans) AI598851 component of oligomeric golgi complex 8 Cog8 291990 NM_001106182 0017119 // Golgi transport complex // not recorded /// 0017119 // Golgi transport complex // inferred from electronic annotation 1374046_at BG376092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376092 /DB_XREF=gi:13300564 /DB_XREF=UI-R-CT0-bum-d-09-0-UI.s1 /CLONE=UI-R-CT0-bum-d-09-0-UI /FEA=EST /CNT=9 /TID=Rn.49010.1 /TIER=Stack /STK=7 /UG=Rn.49010 /UG_TITLE=ESTs BG376092 heparan sulfate (glucosamine) 3-O-sulfotransferase 2 Hs3st2 293451 NM_181370 0007623 // circadian rhythm // inferred from direct assay 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0008467 // [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0033871 // [heparan sulfate]-glucosamine 3-sulfotransferase 2 activity // inferred from electronic annotation 1374047_at BM390427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390427 /DB_XREF=gi:18190480 /DB_XREF=UI-R-CN1-cjq-p-11-0-UI.s1 /CLONE=UI-R-CN1-cjq-p-11-0-UI /FEA=EST /CNT=9 /TID=Rn.35239.1 /TIER=Stack /STK=7 /UG=Rn.35239 /UG_TITLE=ESTs, Highly similar to unknown (M.musculus) BM390427 similar to RIKEN cDNA 2400010D15 RGD1311805 291784 NM_001009638 1374048_at AI598581 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598581 /DB_XREF=gi:4607615 /DB_XREF=EST250270 /CLONE=REMDS58 /FEA=EST /CNT=9 /TID=Rn.21952.1 /TIER=Stack /STK=7 /UG=Rn.21952 /UG_TITLE=ESTs, Weakly similar to GDNF RAT GLIAL CELL LINE-DERIVED NEUROTROPHIC FACTOR PRECURSOR (R.norvegicus) AI598581 neurturin Nrtn 84423 NM_053399 0001755 // neural crest cell migration // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0021675 // nerve development // not recorded /// 0031175 // neuron projection development // not recorded 0030424 // axon // inferred from direct assay 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation 1374049_at AI230220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230220 /DB_XREF=gi:3814107 /DB_XREF=EST226915 /CLONE=REMCT79 /FEA=EST /CNT=9 /TID=Rn.24381.1 /TIER=Stack /STK=7 /UG=Rn.24381 /UG_TITLE=ESTs, Moderately similar to MLE3 RAT MYOSIN LIGHT CHAIN 3, SKELETAL MUSCLE ISOFORM (R.norvegicus) AI230220 smooth muscle and non-muscle myosin alkali light chain 6B-like LOC100359980 100359980 XM_002726853 /// XM_002729768 0005509 // calcium ion binding // inferred from electronic annotation 1374050_at BE100918 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100918 /DB_XREF=gi:8492819 /DB_XREF=UI-R-BJ1-aug-a-08-0-UI.s1 /CLONE=UI-R-BJ1-aug-a-08-0-UI /FEA=EST /CNT=9 /TID=Rn.39348.1 /TIER=Stack /STK=7 /UG=Rn.39348 /UG_TITLE=ESTs BE100918 RUN and FYVE domain containing 1 Rufy1 360521 NM_001100727 0015031 // protein transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0030100 // regulation of endocytosis // inferred from electronic annotation /// 0030100 // regulation of endocytosis // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005770 // late endosome // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0008565 // protein transporter activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1374051_at AA955172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955172 /DB_XREF=gi:4234255 /DB_XREF=UI-R-A1-du-b-01-0-UI.s1 /CLONE=UI-R-A1-du-b-01-0-UI /FEA=EST /CNT=9 /TID=Rn.8696.1 /TIER=Stack /STK=7 /UG=Rn.8696 /UG_TITLE=ESTs AA955172 non-SMC condensin II complex, subunit H2 Ncaph2 300149 NM_001024877 0030261 // chromosome condensation // inferred from electronic annotation /// 0033077 // T cell differentiation in thymus // not recorded 0005634 // nucleus // inferred from electronic annotation 1374052_at AI599270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599270 /DB_XREF=gi:4608318 /DB_XREF=EST250973 /CLONE=REMEP83 /FEA=EST /CNT=9 /TID=Rn.17465.1 /TIER=Stack /STK=7 /UG=Rn.17465 /UG_TITLE=ESTs AI599270 Family with sequence similarity 160, member B1 Fam160b1 361774 XM_001064355 /// XM_342068 1374053_at AI235774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235774 /DB_XREF=gi:3829280 /DB_XREF=EST232336 /CLONE=ROVCW85 /FEA=EST /CNT=9 /TID=Rn.18457.1 /TIER=Stack /STK=7 /UG=Rn.18457 /UG_TITLE=ESTs, Moderately similar to minichromosome maintenance deficient (S. cerevisiae) 3-associate; nuclear protein GANP (Mus musculus) (M.musculus) AI235774 minichromosome maintenance complex component 3 associated protein Mcm3ap 294339 NM_001106382 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation 1374054_at BE118605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118605 /DB_XREF=gi:8510710 /DB_XREF=UI-R-BJ1-azq-f-09-0-UI.s1 /CLONE=UI-R-BJ1-azq-f-09-0-UI /FEA=EST /CNT=9 /TID=Rn.19884.1 /TIER=Stack /STK=7 /UG=Rn.19884 /UG_TITLE=ESTs BE118605 1374055_at BF285169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285169 /DB_XREF=gi:11216239 /DB_XREF=EST449760 /CLONE=RGIFB31 /FEA=EST /CNT=9 /TID=Rn.9093.1 /TIER=Stack /STK=7 /UG=Rn.9093 /UG_TITLE=ESTs BF285169 Ets2 repressor factor Erf 292721 NM_001170335 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1374056_at AI236229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236229 /DB_XREF=gi:4136175 /DB_XREF=EST232791 /CLONE=ROVDC94 /FEA=EST /CNT=9 /TID=Rn.15377.1 /TIER=Stack /STK=7 /UG=Rn.15377 /UG_TITLE=ESTs AI236229 RNA binding motif protein 24 Rbm24 690139 NM_001191100 /// XM_001073426 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1374057_at AI177143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177143 /DB_XREF=gi:3727781 /DB_XREF=EST220750 /CLONE=ROVCB40 /FEA=EST /CNT=9 /TID=Rn.12015.1 /TIER=Stack /STK=7 /UG=Rn.12015 /UG_TITLE=ESTs AI177143 Homeo box D9 Hoxd9 688999 NM_001173469 /// XM_002726192 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0008344 // adult locomotory behavior // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009954 // proximal/distal pattern formation // not recorded /// 0030879 // mammary gland development // not recorded /// 0035115 // embryonic forelimb morphogenesis // not recorded /// 0035136 // forelimb morphogenesis // not recorded /// 0035137 // hindlimb morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048706 // embryonic skeletal system development // not recorded /// 0048935 // peripheral nervous system neuron development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1374058_at BM384945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384945 /DB_XREF=gi:18184998 /DB_XREF=UI-R-CN1-cjl-h-08-0-UI.s2 /CLONE=UI-R-CN1-cjl-h-08-0-UI /FEA=EST /CNT=9 /TID=Rn.14274.1 /TIER=Stack /STK=7 /UG=Rn.14274 /UG_TITLE=ESTs, Weakly similar to R12C12.6.p (Caenorhabditis elegans) (C.elegans) BM384945 TMEM9 domain family, member B Tmem9b 293415 NM_001106289 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // not recorded 1374059_at AI177428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177428 /DB_XREF=gi:3728066 /DB_XREF=EST221051 /CLONE=RPLBZ19 /FEA=EST /CNT=9 /TID=Rn.15357.1 /TIER=Stack /STK=7 /UG=Rn.15357 /UG_TITLE=ESTs AI177428 1374060_at AI411374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411374 /DB_XREF=gi:4254878 /DB_XREF=EST239668 /CLONE=RKIES28 /FEA=EST /CNT=9 /TID=Rn.28354.1 /TIER=Stack /STK=7 /UG=Rn.28354 /UG_TITLE=ESTs AI411374 1374061_at BF282054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282054 /DB_XREF=gi:11213124 /DB_XREF=EST446645 /CLONE=RGIDB23 /FEA=EST /CNT=9 /TID=Rn.34376.1 /TIER=Stack /STK=7 /UG=Rn.34376 /UG_TITLE=ESTs, Weakly similar to S58880 receptor DEC-205 - mouse (M.musculus) BF282054 CD302 molecule Cd302 295629 NM_001013916 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1374062_x_at AA946204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946204 /DB_XREF=gi:3106120 /DB_XREF=EST201703 /CLONE=RLUBC34 /FEA=EST /CNT=9 /TID=Rn.6500.2 /TIER=Stack /STK=7 /UG=Rn.6500 /LL=59075 /UG_GENE=Gprk5 /UG_TITLE=G protein-coupled receptor kinase 5 AA946204 microtubule-associated protein, RP/EB family, member 3 Mapre3 298848 NM_001007656 0007049 // cell cycle // inferred from electronic annotation /// 0007049 // cell cycle // not recorded /// 0007067 // mitosis // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005874 // microtubule // not recorded /// 0030496 // midbody // inferred from electronic annotation /// 0030496 // midbody // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded 1374063_at AI579288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI579288 /DB_XREF=gi:4563664 /DB_XREF=UI-R-AG0-wu-a-05-0-UI.s1 /CLONE=UI-R-AG0-wu-a-05-0-UI /FEA=EST /CNT=16 /TID=Rn.32568.1 /TIER=Stack /STK=7 /UG=Rn.32568 /UG_TITLE=ESTs, Weakly similar to SFR5 RAT SPLICING FACTOR, ARGININESERINE-RICH 5 (R.norvegicus) AI579288 splicing factor, arginine/serine-rich 3 Sfrs3 361814 NM_001047907 0008380 // RNA splicing // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374064_at BG376942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376942 /DB_XREF=gi:13301414 /DB_XREF=UI-R-CU0-bvl-c-08-0-UI.s1 /CLONE=UI-R-CU0-bvl-c-08-0-UI /FEA=EST /CNT=15 /TID=Rn.5845.1 /TIER=Stack /STK=7 /UG=Rn.5845 /UG_TITLE=ESTs BG376942 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3 Nfatc3 361400 NM_001108447 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007507 // heart development // not recorded /// 0045333 // cellular respiration // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded 1374065_at BG378920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378920 /DB_XREF=gi:13303392 /DB_XREF=UI-R-CV1-bvu-e-07-0-UI.s1 /CLONE=UI-R-CV1-bvu-e-07-0-UI /FEA=EST /CNT=13 /TID=Rn.38245.1 /TIER=Stack /STK=7 /UG=Rn.38245 /UG_TITLE=ESTs BG378920 1374066_at BG376309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376309 /DB_XREF=gi:13300781 /DB_XREF=UI-R-CT0-buo-a-03-0-UI.s1 /CLONE=UI-R-CT0-buo-a-03-0-UI /FEA=EST /CNT=12 /TID=Rn.6873.1 /TIER=Stack /STK=7 /UG=Rn.6873 /UG_TITLE=ESTs BG376309 cell division cycle 2-like 6 (CDK8-like) Cdc2l6 309804 NM_001107634 0006468 // protein phosphorylation // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1374067_at AA852011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA852011 /DB_XREF=gi:2939551 /DB_XREF=EST194780 /CLONE=RSPAP45 /FEA=EST /CNT=12 /TID=Rn.6855.1 /TIER=Stack /STK=7 /UG=Rn.6855 /UG_TITLE=ESTs AA852011 similar to 2700078E11Rik protein RGD1308127 365493 NM_001014248 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0031461 // cullin-RING ubiquitin ligase complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation 1374068_at BG673672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG673672 /DB_XREF=gi:13895771 /DB_XREF=DRNBXD02 /CLONE=DRNBXD02 /FEA=EST /CNT=11 /TID=Rn.1508.1 /TIER=Stack /STK=7 /UG=Rn.1508 /UG_TITLE=ESTs BG673672 vacuolar protein sorting 39 homolog (S. cerevisiae) Vps39 362199 NM_001012186 0030897 // HOPS complex // not recorded 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1374069_at BE118560 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118560 /DB_XREF=gi:8510665 /DB_XREF=UI-R-BJ1-azq-b-09-0-UI.s1 /CLONE=UI-R-BJ1-azq-b-09-0-UI /FEA=EST /CNT=11 /TID=Rn.8468.1 /TIER=Stack /STK=7 /UG=Rn.8468 /UG_TITLE=ESTs BE118560 RAB11a, member RAS oncogene family Rab11a 81830 NM_031152 0000910 // cytokinesis // inferred from electronic annotation /// 0000910 // cytokinesis // not recorded /// 0006184 // GTP catabolic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from mutant phenotype /// 0051223 // regulation of protein transport // inferred from mutant phenotype 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from direct assay /// 0032154 // cleavage furrow // not recorded /// 0032154 // cleavage furrow // inferred from sequence or structural similarity /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from direct assay /// 0055037 // recycling endosome // not recorded /// 0055038 // recycling endosome membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation 1374070_at AA800587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800587 /DB_XREF=gi:4131514 /DB_XREF=EST190084 /CLONE=RLUAB54 /FEA=EST /CNT=11 /TID=Rn.3503.1 /TIER=Stack /STK=7 /UG=Rn.3503 /UG_TITLE=ESTs, Weakly similar to GSHC RAT GLUTATHIONE PEROXIDASE (R.norvegicus) AA800587 glutathione peroxidase 2 Gpx2 29326 NM_183403 0001659 // temperature homeostasis // inferred from electronic annotation /// 0001659 // temperature homeostasis // not recorded /// 0002862 // negative regulation of inflammatory response to antigenic stimulus // inferred from electronic annotation /// 0002862 // negative regulation of inflammatory response to antigenic stimulus // not recorded /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0009609 // response to symbiotic bacterium // inferred from electronic annotation /// 0009609 // response to symbiotic bacterium // not recorded /// 0051702 // interaction with symbiont // inferred from electronic annotation /// 0051702 // interaction with symbiont // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004601 // peroxidase activity // inferred from electronic annotation /// 0004602 // glutathione peroxidase activity // inferred from direct assay /// 0004602 // glutathione peroxidase activity // not recorded /// 0004602 // glutathione peroxidase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1374071_at BG670800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670800 /DB_XREF=gi:13892899 /DB_XREF=DRNBFG04 /CLONE=DRNBFG04 /FEA=EST /CNT=11 /TID=Rn.36745.1 /TIER=Stack /STK=7 /UG=Rn.36745 /UG_TITLE=ESTs BG670800 family with sequence similarity 118, member A Fam118a 300120 NM_001173336 /// XM_001078208 /// XM_235547 1374072_at AI010272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010272 /DB_XREF=gi:3224104 /DB_XREF=EST204723 /CLONE=RLUBW26 /FEA=EST /CNT=11 /TID=Rn.17550.1 /TIER=Stack /STK=7 /UG=Rn.17550 /UG_TITLE=ESTs AI010272 splicing factor, arginine/serine-rich 1 Sfrs1 689890 NM_001109552 0001701 // in utero embryonic development // not recorded /// 0008380 // RNA splicing // not recorded /// 0060048 // cardiac muscle contraction // not recorded 0005634 // nucleus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0050733 // RS domain binding // not recorded 1374073_at BI285135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285135 /DB_XREF=gi:14938470 /DB_XREF=UI-R-DB0-byw-e-11-0-UI.s1 /CLONE=UI-R-DB0-byw-e-11-0-UI /FEA=EST /CNT=11 /TID=Rn.23733.1 /TIER=Stack /STK=7 /UG=Rn.23733 /UG_TITLE=ESTs, Weakly similar to T34013 hypothetical protein Y4C6B.5 - Caenorhabditis elegans (C.elegans) BI285135 solute carrier family 46, member 1 Slc46a1 303333 NM_001013969 0006810 // transport // inferred from electronic annotation /// 0015884 // folic acid transport // not recorded /// 0015884 // folic acid transport // inferred from sequence or structural similarity /// 0015884 // folic acid transport // inferred from electronic annotation /// 0015886 // heme transport // not recorded /// 0015886 // heme transport // inferred from sequence or structural similarity /// 0015886 // heme transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from sequence or structural similarity /// 0016324 // apical plasma membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005542 // folic acid binding // inferred from electronic annotation /// 0008517 // folic acid transporter activity // not recorded /// 0008517 // folic acid transporter activity // inferred from sequence or structural similarity /// 0008517 // folic acid transporter activity // inferred from electronic annotation /// 0015232 // heme transporter activity // not recorded /// 0015232 // heme transporter activity // inferred from sequence or structural similarity /// 0015232 // heme transporter activity // inferred from electronic annotation 1374074_at BF285292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285292 /DB_XREF=gi:11216362 /DB_XREF=EST449883 /CLONE=RGIFD13 /FEA=EST /CNT=10 /TID=Rn.19147.1 /TIER=Stack /STK=7 /UG=Rn.19147 /UG_TITLE=ESTs BF285292 cell division cycle 37 homolog (S. cerevisiae)-like 1 Cdc37l1 293886 NM_001011941 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1374075_at AI175533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175533 /DB_XREF=gi:4134799 /DB_XREF=EST219087 /CLONE=RMUCO67 /FEA=EST /CNT=10 /TID=Rn.24090.1 /TIER=Stack /STK=7 /UG=Rn.24090 /UG_TITLE=ESTs AI175533 N-ethylmaleimide-sensitive factor attachment protein, gamma Napg 307382 NM_001107384 0006886 // intracellular protein transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374076_at AI408984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408984 /DB_XREF=gi:4252488 /DB_XREF=EST237275 /CLONE=RKIEJ05 /FEA=EST /CNT=10 /TID=Rn.16213.1 /TIER=Stack /STK=7 /UG=Rn.16213 /UG_TITLE=ESTs AI408984 ring finger and WD repeat domain 3 Rfwd3 361409 XM_001075875 /// XM_341690 0010212 // response to ionizing radiation // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0031571 // mitotic cell cycle G1/S DNA damage checkpoint // not recorded 0005634 // nucleus // not recorded 0002039 // p53 binding // not recorded /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0070215 // MDM2 binding // not recorded 1374077_at AI172029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172029 /DB_XREF=gi:3712069 /DB_XREF=EST218024 /CLONE=RMUBU08 /FEA=EST /CNT=10 /TID=Rn.34870.2 /TIER=Stack /STK=7 /UG=Rn.34870 /LL=25271 /UG_GENE=Rxra /UG_TITLE=Retinoid X receptor alpha AI172029 1374078_at BI295133 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295133 /DB_XREF=gi:14958274 /DB_XREF=UI-R-DK0-ceg-b-09-0-UI.s1 /CLONE=UI-R-DK0-ceg-b-09-0-UI /FEA=EST /CNT=10 /TID=Rn.22593.1 /TIER=Stack /STK=7 /UG=Rn.22593 /UG_TITLE=ESTs BI295133 similar to PHF21A protein RGD1560612 362166 XM_001070000 /// XM_002726234 /// XM_002726235 /// XM_002729198 /// XM_342467 0003677 // DNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374079_at AW915055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915055 /DB_XREF=gi:8080740 /DB_XREF=EST346359 /CLONE=RGIBN96 /FEA=EST /CNT=10 /TID=Rn.18886.1 /TIER=Stack /STK=7 /UG=Rn.18886 /UG_TITLE=ESTs AW915055 DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae) Dcun1d4 360928 NM_001108359 1374080_at AI407118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407118 /DB_XREF=gi:4250622 /DB_XREF=EST235406 /CLONE=ROVDT72 /FEA=EST /CNT=10 /TID=Rn.11444.1 /TIER=Stack /STK=7 /UG=Rn.11444 /UG_TITLE=ESTs AI407118 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1374081_at AI011704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011704 /DB_XREF=gi:4133474 /DB_XREF=EST206155 /CLONE=ROVAZ06 /FEA=EST /CNT=10 /TID=Rn.3344.1 /TIER=Stack /STK=7 /UG=Rn.3344 /UG_TITLE=ESTs, Weakly similar to S26689 hypothetical protein hc1 - mouse (M.musculus) AI011704 cancer susceptibility candidate 4 Casc4 362204 XM_001076981 /// XM_001077001 /// XM_001077018 /// XM_001077041 /// XM_002729177 /// XM_002729178 /// XM_342506 1374082_at BI275982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275982 /DB_XREF=gi:14920453 /DB_XREF=UI-R-CX0-bxi-g-09-0-UI.s1 /CLONE=UI-R-CX0-bxi-g-09-0-UI /FEA=EST /CNT=9 /TID=Rn.27740.1 /TIER=Stack /STK=7 /UG=Rn.27740 /UG_TITLE=ESTs, Weakly similar to T27698 hypothetical protein ZK1128.1 - Caenorhabditis elegans (C.elegans) BI275982 similar to PRO1853 homolog RGD1311578 298748 NM_001008318 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1374083_at AA799740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799740 /DB_XREF=gi:2862695 /DB_XREF=EST189237 /CLONE=RHEAE68 /FEA=EST /CNT=9 /TID=Rn.3717.1 /TIER=Stack /STK=7 /UG=Rn.3717 /UG_TITLE=ESTs AA799740 1374084_at BE119993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119993 /DB_XREF=gi:8512098 /DB_XREF=UI-R-CA0-bao-d-04-0-UI.s1 /CLONE=UI-R-CA0-bao-d-04-0-UI /FEA=EST /CNT=9 /TID=Rn.46408.1 /TIER=Stack /STK=7 /UG=Rn.46408 /UG_TITLE=ESTs BE119993 1374085_at BI274201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274201 /DB_XREF=gi:14884896 /DB_XREF=UI-R-CW0-bwg-b-09-0-UI.s1 /CLONE=UI-R-CW0-bwg-b-09-0-UI /FEA=EST /CNT=9 /TID=Rn.3615.1 /TIER=Stack /STK=7 /UG=Rn.3615 /UG_TITLE=ESTs, Weakly similar to MXI1 RAT MAX INTERACTING PROTEIN 1 (R.norvegicus) BI274201 Max dimerization protein 4 Mxd4 360961 NM_001108364 0016481 // negative regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1374086_at BF282296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282296 /DB_XREF=gi:11213467 /DB_XREF=EST446988 /CLONE=RGIDM92 /FEA=EST /CNT=9 /TID=Rn.29374.1 /TIER=Stack /STK=7 /UG=Rn.29374 /UG_TITLE=ESTs BF282296 Rho GTPase activating protein 21 Arhgap21 307178 NM_001191693 /// XM_001074395 /// XM_225628 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374087_at AI411088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411088 /DB_XREF=gi:4254592 /DB_XREF=EST239382 /CLONE=RKIET23 /FEA=EST /CNT=9 /TID=Rn.6748.1 /TIER=Stack /STK=7 /UG=Rn.6748 /UG_TITLE=ESTs AI411088 solute carrier family 48 (heme transporter), member 1 Slc48a1 300191 NM_001127456 0006810 // transport // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1374088_at AA800249 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800249 /DB_XREF=gi:2863204 /DB_XREF=EST189746 /CLONE=RHEAM93 /FEA=EST /CNT=9 /TID=Rn.3872.1 /TIER=Stack /STK=7 /UG=Rn.3872 /UG_TITLE=ESTs, Weakly similar to T08742 hypothetical protein DKFZp586L0518.1 (H.sapiens) AA800249 myopalladin Mypn 309760 NM_001107628 0005783 // endoplasmic reticulum // inferred from electronic annotation 1374089_at BI289692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289692 /DB_XREF=gi:14947534 /DB_XREF=UI-R-DK0-cfn-a-06-0-UI.s1 /CLONE=UI-R-DK0-cfn-a-06-0-UI /FEA=EST /CNT=9 /TID=Rn.15749.1 /TIER=Stack /STK=7 /UG=Rn.15749 /UG_TITLE=ESTs BI289692 1374090_at BI296363 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296363 /DB_XREF=gi:14960717 /DB_XREF=UI-R-DK0-cez-e-04-0-UI.s1 /CLONE=UI-R-DK0-cez-e-04-0-UI /FEA=EST /CNT=9 /TID=Rn.15859.1 /TIER=Stack /STK=7 /UG=Rn.15859 /UG_TITLE=ESTs BI296363 similar to DKFZP547E1010 protein LOC361990 361990 NM_001014175 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1374091_at AW526005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526005 /DB_XREF=gi:7168390 /DB_XREF=UI-R-BO1-aiy-b-10-0-UI.s1 /CLONE=UI-R-BO1-aiy-b-10-0-UI /FEA=EST /CNT=9 /TID=Rn.8987.1 /TIER=Stack /STK=7 /UG=Rn.8987 /UG_TITLE=ESTs AW526005 1374092_at BM392093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392093 /DB_XREF=gi:18192146 /DB_XREF=UI-R-DO1-ckp-k-07-0-UI.s1 /CLONE=UI-R-DO1-ckp-k-07-0-UI /FEA=EST /CNT=9 /TID=Rn.9622.1 /TIER=Stack /STK=7 /UG=Rn.9622 /UG_TITLE=ESTs, Weakly similar to YA65 MOUSE 65 KD YES-ASSOCIATED PROTEIN (M.musculus) BM392093 WW domain containing transcription regulator 1 Wwtr1 295062 NM_001024869 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from electronic annotation /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0017145 // stem cell division // inferred from electronic annotation /// 0017145 // stem cell division // not recorded /// 0032835 // glomerulus development // inferred from electronic annotation /// 0032835 // glomerulus development // not recorded /// 0035329 // hippo signaling cascade // inferred from electronic annotation /// 0035329 // hippo signaling cascade // not recorded /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060271 // cilium morphogenesis // inferred from electronic annotation /// 0060271 // cilium morphogenesis // not recorded /// 0060390 // regulation of SMAD protein nuclear translocation // inferred from electronic annotation /// 0060390 // regulation of SMAD protein nuclear translocation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1374093_at BE108840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108840 /DB_XREF=gi:8500945 /DB_XREF=UI-R-BS1-ayz-a-05-0-UI.s1 /CLONE=UI-R-BS1-ayz-a-05-0-UI /FEA=EST /CNT=9 /TID=Rn.23791.1 /TIER=Stack /STK=7 /UG=Rn.23791 /UG_TITLE=ESTs BE108840 1374094_at BF408129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408129 /DB_XREF=gi:11396104 /DB_XREF=UI-R-BJ1-aup-f-11-0-UI.s2 /CLONE=UI-R-BJ1-aup-f-11-0-UI /FEA=EST /CNT=9 /TID=Rn.24986.1 /TIER=Stack /STK=7 /UG=Rn.24986 /UG_TITLE=ESTs BF408129 1374095_at BM385244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385244 /DB_XREF=gi:18185297 /DB_XREF=UI-R-EB1-clf-l-15-0-UI.s1 /CLONE=UI-R-EB1-clf-l-15-0-UI /FEA=EST /CNT=9 /TID=Rn.3400.1 /TIER=Stack /STK=7 /UG=Rn.3400 /UG_TITLE=ESTs, Moderately similar to N-acetylgalactosaminyltransferase T-6 (M.musculus) BM385244 1374096_at BF411381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411381 /DB_XREF=gi:11399363 /DB_XREF=UI-R-CN0-bmj-g-04-0-UI.s1 /CLONE=UI-R-CN0-bmj-g-04-0-UI /FEA=EST /CNT=9 /TID=Rn.39176.1 /TIER=Stack /STK=7 /UG=Rn.39176 /UG_TITLE=ESTs BF411381 1374097_at AW251791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251791 /DB_XREF=gi:6595382 /DB_XREF=UI-R-BJ0-adl-a-03-0-UI.s1 /CLONE=UI-R-BJ0-adl-a-03-0-UI /FEA=EST /CNT=9 /TID=Rn.41066.1 /TIER=Stack /STK=7 /UG=Rn.41066 /UG_TITLE=ESTs AW251791 1374098_at AW530272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530272 /DB_XREF=gi:7172686 /DB_XREF=UI-R-BU0-amu-f-08-0-UI.s1 /CLONE=UI-R-BU0-amu-f-08-0-UI /FEA=EST /CNT=9 /TID=Rn.39893.1 /TIER=Stack /STK=7 /UG=Rn.39893 /UG_TITLE=ESTs, Moderately similar to T09065 hypothetical protein - mouse (M.musculus) AW530272 EGF-like-domain, multiple 8 Egfl8 406166 NM_001004070 /// NM_001165880 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1374099_at BM386665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386665 /DB_XREF=gi:18186718 /DB_XREF=UI-R-CN1-cjg-l-07-0-UI.s1 /CLONE=UI-R-CN1-cjg-l-07-0-UI /FEA=EST /CNT=9 /TID=Rn.35035.1 /TIER=Stack /STK=7 /UG=Rn.35035 /UG_TITLE=ESTs, Weakly similar to nebulin-related anchoring protein (Mus musculus) (M.musculus) BM386665 nebulin-related anchoring protein Nrap 307982 NM_001107443 /// NM_001113743 0007165 // signal transduction // inferred from electronic annotation 0005916 // fascia adherens // not recorded /// 0005927 // muscle tendon junction // not recorded /// 0030016 // myofibril // not recorded 0003779 // actin binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017166 // vinculin binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051371 // muscle alpha-actinin binding // not recorded 1374100_at AI102771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102771 /DB_XREF=gi:3707457 /DB_XREF=EST212060 /CLONE=REMBS29 /FEA=EST /CNT=9 /TID=Rn.8384.1 /TIER=Stack /STK=7 /UG=Rn.8384 /UG_TITLE=ESTs AI102771 1374101_at BF282437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282437 /DB_XREF=gi:11213419 /DB_XREF=EST446940 /CLONE=RGIDM51 /FEA=EST /CNT=9 /TID=Rn.12599.1 /TIER=Stack /STK=7 /UG=Rn.12599 /UG_TITLE=ESTs BF282437 TBC1 domain family, member 10a Tbc1d10a 360968 NM_001015022 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030165 // PDZ domain binding // not recorded 1374102_at AI101299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101299 /DB_XREF=gi:3706221 /DB_XREF=EST210588 /CLONE=RBRBK94 /FEA=EST /CNT=9 /TID=Rn.24838.1 /TIER=Stack /STK=7 /UG=Rn.24838 /UG_TITLE=ESTs AI101299 1374103_at BE102100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102100 /DB_XREF=gi:8494199 /DB_XREF=UI-R-BT1-aqj-d-03-0-UI.s1 /CLONE=UI-R-BT1-aqj-d-03-0-UI /FEA=EST /CNT=9 /TID=Rn.35282.2 /TIER=Stack /STK=7 /UG=Rn.35282 /LL=65153 /UG_GENE=Freq /UG_TITLE=frequenin homolog (Drosophila) BE102100 1374104_at BI281680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281680 /DB_XREF=gi:14931661 /DB_XREF=UI-R-CT0s-cav-c-02-0-UI.s1 /CLONE=UI-R-CT0s-cav-c-02-0-UI /FEA=EST /CNT=9 /TID=Rn.17420.1 /TIER=Stack /STK=7 /UG=Rn.17420 /UG_TITLE=ESTs BI281680 claudin 5 Cldn5 65131 NM_031701 0016338 // calcium-independent cell-cell adhesion // inferred from sequence or structural similarity /// 0042552 // myelination // inferred from physical interaction 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0005923 // tight junction // not recorded /// 0005923 // tight junction // inferred from sequence or structural similarity /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0033270 // paranode region of axon // inferred from direct assay /// 0043220 // Schmidt-Lanterman cleft // inferred from direct assay 0005198 // structural molecule activity // traceable author statement /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // inferred from sequence or structural similarity 1374105_at H31665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31665 /DB_XREF=gi:977082 /DB_XREF=EST105952 /CLONE=RPCAV66 /FEA=EST /CNT=9 /TID=Rn.23735.1 /TIER=Stack /STK=7 /UG=Rn.23735 /UG_TITLE=ESTs H31665 HIG1 hypoxia inducible domain family, member 1A Higd1a 140937 NM_080902 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0005515 // protein binding // not recorded 1374106_at AI412389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412389 /DB_XREF=gi:4255893 /DB_XREF=EST240687 /CLONE=RBRDW87 /FEA=EST /CNT=9 /TID=Rn.11601.1 /TIER=Stack /STK=7 /UG=Rn.11601 /UG_TITLE=ESTs AI412389 1374107_at AI229668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229668 /DB_XREF=gi:4135455 /DB_XREF=EST226363 /CLONE=REMCK28 /FEA=EST /CNT=8 /TID=Rn.9378.1 /TIER=Stack /STK=7 /UG=Rn.9378 /UG_TITLE=ESTs AI229668 elaC homolog 2 (E. coli) Elac2 282826 NM_172326 0008033 // tRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374108_at BM388942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388942 /DB_XREF=gi:18188995 /DB_XREF=UI-R-DZ0-ckn-n-09-0-UI.s1 /CLONE=UI-R-DZ0-ckn-n-09-0-UI /FEA=EST /CNT=8 /TID=Rn.17834.1 /TIER=Stack /STK=7 /UG=Rn.17834 /UG_TITLE=ESTs BM388942 low density lipoprotein-related protein 12 Lrp12 314941 NM_001134883 0005887 // integral to plasma membrane // not recorded 0005515 // protein binding // not recorded 1374109_at AI230466 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230466 /DB_XREF=gi:3814353 /DB_XREF=EST227161 /CLONE=REMCW82 /FEA=EST /CNT=8 /TID=Rn.30494.1 /TIER=Stack /STK=7 /UG=Rn.30494 /UG_TITLE=ESTs AI230466 diacylglycerol kinase, theta LOC100361138 100361138 NM_001198804 /// XM_002728069 0007165 // signal transduction // inferred from electronic annotation /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0004143 // diacylglycerol kinase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374110_at BI278556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278556 /DB_XREF=gi:14925518 /DB_XREF=UI-R-CW0-bxn-b-07-0-UI.s1 /CLONE=UI-R-CW0-bxn-b-07-0-UI /FEA=EST /CNT=8 /TID=Rn.20959.1 /TIER=Stack /STK=7 /UG=Rn.20959 /UG_TITLE=ESTs BI278556 mannosidase 2, alpha 2 Man2a2 308757 NM_001107527 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006013 // mannose metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004559 // alpha-mannosidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0015923 // mannosidase activity // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation 1374111_at BI301101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301101 /DB_XREF=gi:14977381 /DB_XREF=UI-R-CV2-cgm-h-05-0-UI.s2 /CLONE=UI-R-CV2-cgm-h-05-0-UI /FEA=EST /CNT=8 /TID=Rn.24288.1 /TIER=Stack /STK=7 /UG=Rn.24288 /UG_TITLE=ESTs BI301101 pinin, desmosome associated protein Pnn 368070 NM_001109023 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0016607 // nuclear speck // not recorded 0005515 // protein binding // not recorded 1374112_at BI296251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296251 /DB_XREF=gi:14960505 /DB_XREF=UI-R-DK0-cey-b-04-0-UI.s1 /CLONE=UI-R-DK0-cey-b-04-0-UI /FEA=EST /CNT=8 /TID=Rn.8991.1 /TIER=Stack /STK=7 /UG=Rn.8991 /UG_TITLE=ESTs, Weakly similar to dentatorubral-pallidoluysian atrophy (H.sapiens) BI296251 mitogen-activated protein kinase 1 interacting protein 1 Mapk1ip1 499280 NM_001122782 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1374113_at BM387384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387384 /DB_XREF=gi:18187437 /DB_XREF=UI-R-CN1-cjj-k-01-0-UI.s1 /CLONE=UI-R-CN1-cjj-k-01-0-UI /FEA=EST /CNT=8 /TID=Rn.1864.1 /TIER=Stack /STK=7 /UG=Rn.1864 /UG_TITLE=ESTs BM387384 bromodomain adjacent to zinc finger domain, 1A Baz1a 314126 NM_001170568 /// XM_001079067 /// XM_234156 0000228 // nuclear chromosome // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1374114_at BI282971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282971 /DB_XREF=gi:14934264 /DB_XREF=UI-R-CW0s-ccf-e-02-0-UI.s1 /CLONE=UI-R-CW0s-ccf-e-02-0-UI /FEA=EST /CNT=8 /TID=Rn.49395.1 /TIER=Stack /STK=7 /UG=Rn.49395 /UG_TITLE=ESTs, Weakly similar to T08680 hypothetical protein DKFZp564P0622.1 (H.sapiens) BI282971 F-box and leucine-rich repeat protein 15 Fbxl15 309453 NM_001107603 1374115_at BG380595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380595 /DB_XREF=gi:13305067 /DB_XREF=UI-R-CT0-btz-b-07-0-UI.s1 /CLONE=UI-R-CT0-btz-b-07-0-UI /FEA=EST /CNT=8 /TID=Rn.46496.1 /TIER=Stack /STK=7 /UG=Rn.46496 /UG_TITLE=ESTs BG380595 myeloid zinc finger 1 Mzf1 361508 NM_001108470 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374116_at AA964836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964836 /DB_XREF=gi:4279710 /DB_XREF=UI-R-C0-gx-c-07-0-UI.s1 /CLONE=UI-R-C0-gx-c-07-0-UI /FEA=EST /CNT=8 /TID=Rn.11921.1 /TIER=Stack /STK=7 /UG=Rn.11921 /UG_TITLE=ESTs AA964836 1374117_at BI279562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279562 /DB_XREF=gi:14927496 /DB_XREF=UI-R-DE0-cae-a-03-0-UI.s1 /CLONE=UI-R-DE0-cae-a-03-0-UI /FEA=EST /CNT=8 /TID=Rn.13017.3 /TIER=Stack /STK=7 /UG=Rn.13017 /LL=117542 /UG_GENE=Baiap2 /UG_TITLE=brain-specific angiogenesis inhibitor 1-associated protein 2 BI279562 BAI1-associated protein 2 Baiap2 117542 NM_057196 0007165 // signal transduction // inferred from electronic annotation /// 0046847 // filopodium assembly // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030175 // filopodium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008093 // cytoskeletal adaptor activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation 1374118_at AA944176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944176 /DB_XREF=gi:3104092 /DB_XREF=EST199675 /CLONE=REMAD30 /FEA=EST /CNT=8 /TID=Rn.7687.1 /TIER=Stack /STK=7 /UG=Rn.7687 /UG_TITLE=ESTs, Weakly similar to T19334 hypothetical protein R74.1 - Caenorhabditis elegans (C.elegans) AA944176 leucyl-tRNA synthetase Lars 291624 NM_001009637 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006429 // leucyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004823 // leucine-tRNA ligase activity // inferred from electronic annotation /// 0004823 // leucine-tRNA ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1374119_at BI279615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279615 /DB_XREF=gi:14927591 /DB_XREF=UI-R-DE0-cae-f-02-0-UI.s1 /CLONE=UI-R-DE0-cae-f-02-0-UI /FEA=EST /CNT=8 /TID=Rn.3063.1 /TIER=Stack /STK=7 /UG=Rn.3063 /UG_TITLE=ESTs BI279615 E74-like factor 3 Elf3 304815 NM_001024768 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0060056 // mammary gland involution // inferred from electronic annotation /// 0060056 // mammary gland involution // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1374120_at BI296223 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296223 /DB_XREF=gi:14960450 /DB_XREF=UI-R-DK0-cex-g-08-0-UI.s1 /CLONE=UI-R-DK0-cex-g-08-0-UI /FEA=EST /CNT=8 /TID=Rn.33421.1 /TIER=Stack /STK=7 /UG=Rn.33421 /UG_TITLE=ESTs BI296223 1374121_at AI102735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102735 /DB_XREF=gi:3704733 /DB_XREF=EST212024 /CLONE=REMBR87 /FEA=EST /CNT=8 /TID=Rn.9.1 /TIER=Stack /STK=7 /UG=Rn.9 /UG_TITLE=ESTs AI102735 1374122_at BM386808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386808 /DB_XREF=gi:18186861 /DB_XREF=UI-R-CN1-cjh-g-06-0-UI.s1 /CLONE=UI-R-CN1-cjh-g-06-0-UI /FEA=EST /CNT=8 /TID=Rn.2304.1 /TIER=Stack /STK=7 /UG=Rn.2304 /UG_TITLE=ESTs BM386808 0016459 // myosin complex // inferred from electronic annotation 0003774 // motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1374123_at BM384680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384680 /DB_XREF=gi:18184733 /DB_XREF=UI-R-DY0-ckl-n-05-0-UI.s1 /CLONE=UI-R-DY0-ckl-n-05-0-UI /FEA=EST /CNT=8 /TID=Rn.25048.1 /TIER=Stack /STK=7 /UG=Rn.25048 /UG_TITLE=ESTs BM384680 1374124_at AA851397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851397 /DB_XREF=gi:2938937 /DB_XREF=EST194165 /CLONE=RPLAG11 /FEA=EST /CNT=8 /TID=Rn.40139.1 /TIER=Stack /STK=7 /UG=Rn.40139 /UG_TITLE=ESTs, Weakly similar to T09B4.10.p (Caenorhabditis elegans) (C.elegans) AA851397 jumonji domain containing 8 Jmjd8 360498 NM_001014116 1374125_at BE113131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113131 /DB_XREF=gi:8505236 /DB_XREF=UI-R-BJ1-awb-h-06-0-UI.s1 /CLONE=UI-R-BJ1-awb-h-06-0-UI /FEA=EST /CNT=8 /TID=Rn.27175.1 /TIER=Stack /STK=7 /UG=Rn.27175 /UG_TITLE=ESTs BE113131 GATA binding protein 5 Gata5 499951 NM_001024316 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0060575 // intestinal epithelial cell differentiation // inferred from electronic annotation /// 0060575 // intestinal epithelial cell differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374126_at BG374261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374261 /DB_XREF=gi:13298733 /DB_XREF=UI-R-CV1-bsn-c-06-0-UI.s1 /CLONE=UI-R-CV1-bsn-c-06-0-UI /FEA=EST /CNT=8 /TID=Rn.27662.1 /TIER=Stack /STK=7 /UG=Rn.27662 /UG_TITLE=ESTs BG374261 1374127_at BM392050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392050 /DB_XREF=gi:18192103 /DB_XREF=UI-R-DO1-ckp-a-21-0-UI.s1 /CLONE=UI-R-DO1-ckp-a-21-0-UI /FEA=EST /CNT=8 /TID=Rn.25224.1 /TIER=Stack /STK=7 /UG=Rn.25224 /UG_TITLE=ESTs BM392050 zinc finger protein 18 Znf18 303226 NM_001012008 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374128_at BI278569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278569 /DB_XREF=gi:14925544 /DB_XREF=UI-R-CW0-bxn-c-09-0-UI.s1 /CLONE=UI-R-CW0-bxn-c-09-0-UI /FEA=EST /CNT=8 /TID=Rn.35076.1 /TIER=Stack /STK=7 /UG=Rn.35076 /UG_TITLE=ESTs, Highly similar to T34556 hypothetical protein DKFZp434N0735.1 (H.sapiens) BI278569 1374129_at AI104518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104518 /DB_XREF=gi:3704978 /DB_XREF=EST213807 /CLONE=RHECE55 /FEA=EST /CNT=8 /TID=Rn.23857.1 /TIER=Stack /STK=7 /UG=Rn.23857 /UG_TITLE=ESTs, Weakly similar to OAZ RAT ORNITHINE DECARBOXYLASE ANTIZYME (R.norvegicus) AI104518 similar to Ornithine decarboxylase antizyme 2 (ODC-Az 2) (AZ2) /// ornithine decarboxylase antizyme 2 LOC690789 /// Oaz2 501454 /// 690789 NM_001109899 /// XR_006945 0008073 // ornithine decarboxylase inhibitor activity // inferred from electronic annotation 1374130_at BG373550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373550 /DB_XREF=gi:13270087 /DB_XREF=UI-R-CV1-bse-b-04-0-UI.s1 /CLONE=UI-R-CV1-bse-b-04-0-UI /FEA=EST /CNT=8 /TID=Rn.20576.1 /TIER=Stack /STK=7 /UG=Rn.20576 /UG_TITLE=ESTs BG373550 1374131_at AI411971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411971 /DB_XREF=gi:4255475 /DB_XREF=EST240265 /CLONE=RKIER78 /FEA=EST /CNT=8 /TID=Rn.34184.1 /TIER=Stack /STK=7 /UG=Rn.34184 /UG_TITLE=ESTs AI411971 1374132_at BI294788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294788 /DB_XREF=gi:14957584 /DB_XREF=UI-R-DK0-cec-b-07-0-UI.s1 /CLONE=UI-R-DK0-cec-b-07-0-UI /FEA=EST /CNT=8 /TID=Rn.24195.1 /TIER=Stack /STK=7 /UG=Rn.24195 /UG_TITLE=ESTs BI294788 1374133_at BG373110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373110 /DB_XREF=gi:13269647 /DB_XREF=UI-R-CV1-bsf-f-02-0-UI.s1 /CLONE=UI-R-CV1-bsf-f-02-0-UI /FEA=EST /CNT=8 /TID=Rn.9514.1 /TIER=Stack /STK=7 /UG=Rn.9514 /UG_TITLE=ESTs BG373110 tRNA isopentenyltransferase 1 Trit1 362586 NM_001108676 0008033 // tRNA processing // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0052381 // tRNA dimethylallyltransferase activity // inferred from electronic annotation 1374134_at BM384057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384057 /DB_XREF=gi:18184110 /DB_XREF=UI-R-DM1-ckb-o-10-0-UI.s1 /CLONE=UI-R-DM1-ckb-o-10-0-UI /FEA=EST /CNT=8 /TID=Rn.65530.1 /TIER=Stack /STK=7 /UG=Rn.65530 /UG_TITLE=ESTs BM384057 ELK3, member of ETS oncogene family Elk3 362871 NM_001108743 0001525 // angiogenesis // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0042060 // wound healing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005739 // mitochondrion // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0032422 // purine-rich negative regulatory element binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1374135_at AI233262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233262 /DB_XREF=gi:3817142 /DB_XREF=EST229950 /CLONE=RKIDC85 /FEA=EST /CNT=8 /TID=Rn.30479.1 /TIER=Stack /STK=7 /UG=Rn.30479 /UG_TITLE=ESTs AI233262 importin 4 Ipo4 290228 NM_001106038 0006886 // intracellular protein transport // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation 1374136_at BG665121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665121 /DB_XREF=gi:13887043 /DB_XREF=DRABYG05 /CLONE=DRABYG05 /FEA=EST /CNT=8 /TID=Rn.53355.1 /TIER=Stack /STK=7 /UG=Rn.53355 /UG_TITLE=ESTs, Moderately similar to T46267 hypothetical protein DKFZp761C029.1 (H.sapiens) BG665121 protein arginine methyltransferase 10 (putative) Prmt10 291947 NM_001191599 /// XM_001071216 /// XM_214662 0006479 // protein methylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0008276 // protein methyltransferase activity // inferred from electronic annotation 1374137_at AA818055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818055 /DB_XREF=gi:4198575 /DB_XREF=UI-R-A0-ai-d-09-0-UI.s1 /CLONE=UI-R-A0-ai-d-09-0-UI /FEA=EST /CNT=8 /TID=Rn.1245.1 /TIER=Stack /STK=7 /UG=Rn.1245 /UG_TITLE=ESTs, Weakly similar to TANK_MOUSE TRAF FAMILY MEMBER-ASSOCIATED NF-KAPPA-B ACTIVATOR (TRAF-INTERACTING PROTEIN) (I-TRAF) (M.musculus) AA818055 1374138_at BG378169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378169 /DB_XREF=gi:13302641 /DB_XREF=UI-R-CV1-bvo-g-09-0-UI.s1 /CLONE=UI-R-CV1-bvo-g-09-0-UI /FEA=EST /CNT=8 /TID=Rn.65387.1 /TIER=Stack /STK=7 /UG=Rn.65387 /UG_TITLE=ESTs, Weakly similar to T32780 hypothetical protein C50D2.7 - Caenorhabditis elegans (C.elegans) BG378169 1374139_at BG671589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671589 /DB_XREF=gi:13893688 /DB_XREF=DRNBVB02 /CLONE=DRNBVB02 /FEA=EST /CNT=8 /TID=Rn.3537.1 /TIER=Stack /STK=7 /UG=Rn.3537 /UG_TITLE=ESTs BG671589 cerebellar degeneration-related 2 Cdr2 308958 NM_001025682 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374140_at AI716756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716756 /DB_XREF=gi:5034012 /DB_XREF=UI-R-Y0-acf-g-06-0-UI.s1 /CLONE=UI-R-Y0-acf-g-06-0-UI /FEA=EST /CNT=8 /TID=Rn.41530.1 /TIER=Stack /STK=7 /UG=Rn.41530 /UG_TITLE=ESTs AI716756 1374141_at BG372419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372419 /DB_XREF=gi:13268956 /DB_XREF=UI-R-CV1-bsc-e-05-0-UI.s1 /CLONE=UI-R-CV1-bsc-e-05-0-UI /FEA=EST /CNT=8 /TID=Rn.40993.1 /TIER=Stack /STK=7 /UG=Rn.40993 /UG_TITLE=ESTs, Moderately similar to T46416 hypothetical protein DKFZp434E1723.1 (H.sapiens) BG372419 PDX1 C-terminal inhibiting factor 1 Pcif1 362269 NM_001108605 0005515 // protein binding // inferred from electronic annotation 1374142_at BE113624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113624 /DB_XREF=gi:8505729 /DB_XREF=UI-R-BJ1-awg-e-01-0-UI.s1 /CLONE=UI-R-BJ1-awg-e-01-0-UI /FEA=EST /CNT=8 /TID=Rn.37820.1 /TIER=Stack /STK=7 /UG=Rn.37820 /UG_TITLE=ESTs BE113624 proline rich 15 Prr15 312358 NM_001104527 1374143_at AI602491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602491 /DB_XREF=gi:4611652 /DB_XREF=UI-R-AG0-xa-e-04-0-UI.s1 /CLONE=UI-R-AG0-xa-e-04-0-UI /FEA=EST /CNT=8 /TID=Rn.18976.1 /TIER=Stack /STK=7 /UG=Rn.18976 /UG_TITLE=ESTs AI602491 Eph receptor A2 Epha2 366492 NM_001108977 0001501 // skeletal system development // not recorded /// 0001568 // blood vessel development // not recorded /// 0001570 // vasculogenesis // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0014028 // notochord formation // not recorded /// 0021915 // neural tube development // not recorded /// 0030182 // neuron differentiation // not recorded /// 0035121 // tail morphogenesis // not recorded /// 0043535 // regulation of blood vessel endothelial cell migration // not recorded /// 0045765 // regulation of angiogenesis // not recorded /// 0048013 // ephrin receptor signaling pathway // inferred from electronic annotation /// 0048013 // ephrin receptor signaling pathway // not recorded /// 0048320 // axial mesoderm formation // not recorded /// 0048570 // notochord morphogenesis // not recorded /// 0060035 // notochord cell development // not recorded 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005003 // ephrin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1374144_at BF402375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402375 /DB_XREF=gi:11390350 /DB_XREF=UI-R-CA0-bhn-e-05-0-UI.s1 /CLONE=UI-R-CA0-bhn-e-05-0-UI /FEA=EST /CNT=8 /TID=Rn.7993.1 /TIER=Stack /STK=7 /UG=Rn.7993 /UG_TITLE=ESTs BF402375 1374145_at BF414252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414252 /DB_XREF=gi:11402241 /DB_XREF=UI-R-BJ2-boo-b-12-0-UI.s1 /CLONE=UI-R-BJ2-boo-b-12-0-UI /FEA=EST /CNT=8 /TID=Rn.9625.1 /TIER=Stack /STK=7 /UG=Rn.9625 /UG_TITLE=ESTs BF414252 PIH1 domain containing 1 Pih1d1 292898 NM_001024868 0000492 // box C/D snoRNP assembly // inferred from electronic annotation /// 0000492 // box C/D snoRNP assembly // not recorded 0070761 // pre-snoRNP complex // inferred from electronic annotation /// 0070761 // pre-snoRNP complex // not recorded 1374146_at BF419366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419366 /DB_XREF=gi:11407355 /DB_XREF=UI-R-BJ2-bqq-g-04-0-UI.s1 /CLONE=UI-R-BJ2-bqq-g-04-0-UI /FEA=EST /CNT=8 /TID=Rn.27237.1 /TIER=Stack /STK=7 /UG=Rn.27237 /UG_TITLE=ESTs, Highly similar to MD22_HUMAN MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2B (MAD2-LIKE 2) (HREV7) (H.sapiens) BF419366 MAD2 mitotic arrest deficient-like 2 (yeast) Mad2l2 313702 NM_001012106 0007067 // mitosis // inferred from electronic annotation 1374147_at BF420306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420306 /DB_XREF=gi:11408295 /DB_XREF=UI-R-BJ2-bpl-d-01-0-UI.s1 /CLONE=UI-R-BJ2-bpl-d-01-0-UI /FEA=EST /CNT=8 /TID=Rn.8219.1 /TIER=Stack /STK=7 /UG=Rn.8219 /UG_TITLE=ESTs BF420306 zinc finger, CCCH-type with G patch domain Zgpat 296478 NM_001009656 0006350 // transcription // inferred from electronic annotation /// 0007175 // negative regulation of epidermal growth factor receptor activity // not recorded /// 0007175 // negative regulation of epidermal growth factor receptor activity // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1374148_at BI296414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296414 /DB_XREF=gi:14960814 /DB_XREF=UI-R-CV2-cgq-h-06-0-UI.s1 /CLONE=UI-R-CV2-cgq-h-06-0-UI /FEA=EST /CNT=8 /TID=Rn.7290.1 /TIER=Stack /STK=7 /UG=Rn.7290 /UG_TITLE=ESTs BI296414 1374149_at AW144301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144301 /DB_XREF=gi:6164200 /DB_XREF=EST294597 /CLONE=RGICP62 /FEA=EST /CNT=8 /TID=Rn.8938.1 /TIER=Stack /STK=7 /UG=Rn.8938 /UG_TITLE=ESTs AW144301 1374150_at AA875425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875425 /DB_XREF=gi:4231305 /DB_XREF=UI-R-E0-cs-f-07-0-UI.s1 /CLONE=UI-R-E0-cs-f-07-0-UI /FEA=EST /CNT=8 /TID=Rn.2915.1 /TIER=Stack /STK=7 /UG=Rn.2915 /UG_TITLE=ESTs AA875425 1374151_at BI289940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289940 /DB_XREF=gi:14948022 /DB_XREF=UI-R-DK0-cfq-a-06-0-UI.s1 /CLONE=UI-R-DK0-cfq-a-06-0-UI /FEA=EST /CNT=8 /TID=Rn.8544.1 /TIER=Stack /STK=7 /UG=Rn.8544 /UG_TITLE=ESTs BI289940 1374152_at BF290018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290018 /DB_XREF=gi:11221088 /DB_XREF=EST454609 /CLONE=RGIHM72 /FEA=EST /CNT=8 /TID=Rn.43827.1 /TIER=Stack /STK=7 /UG=Rn.43827 /UG_TITLE=ESTs BF290018 WD repeat domain 46 Wdr46 309628 NM_212491 1374153_at AI236359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236359 /DB_XREF=gi:3829865 /DB_XREF=EST232921 /CLONE=ROVDE65 /FEA=EST /CNT=8 /TID=Rn.20044.1 /TIER=Stack /STK=7 /UG=Rn.20044 /UG_TITLE=ESTs AI236359 1374154_at AI411610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411610 /DB_XREF=gi:4255114 /DB_XREF=EST239904 /CLONE=ROVES42 /FEA=EST /CNT=8 /TID=Rn.13638.1 /TIER=Stack /STK=7 /UG=Rn.13638 /UG_TITLE=ESTs, Moderately similar to T09073 splicing factor Sip1 (H.sapiens) AI411610 splicing factor, arginine/serine-rich 2, interacting protein Sfrs2ip 312030 XM_002726968 /// XM_231361 0000245 // spliceosome assembly // not recorded /// 0000375 // RNA splicing, via transesterification reactions // not recorded /// 0008380 // RNA splicing // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374155_at BF410502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410502 /DB_XREF=gi:11398477 /DB_XREF=UI-R-CA0-bme-d-08-0-UI.s1 /CLONE=UI-R-CA0-bme-d-08-0-UI /FEA=EST /CNT=8 /TID=Rn.33247.1 /TIER=Stack /STK=7 /UG=Rn.33247 /UG_TITLE=ESTs BF410502 1374156_at BE108018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108018 /DB_XREF=gi:8500123 /DB_XREF=UI-R-CA0-awz-d-12-0-UI.s1 /CLONE=UI-R-CA0-awz-d-12-0-UI /FEA=EST /CNT=8 /TID=Rn.8181.1 /TIER=Stack /STK=7 /UG=Rn.8181 /UG_TITLE=ESTs BE108018 Membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5) Mpp5 314259 NM_001108034 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374157_at AA858930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858930 /DB_XREF=gi:4229204 /DB_XREF=UI-R-A0-bi-h-03-0-UI.s1 /CLONE=UI-R-A0-bi-h-03-0-UI /FEA=EST /CNT=8 /TID=Rn.37733.1 /TIER=Stack /STK=7 /UG=Rn.37733 /UG_TITLE=ESTs AA858930 1374158_at BF398160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398160 /DB_XREF=gi:11383146 /DB_XREF=UI-R-BS2-ben-b-04-0-UI.s1 /CLONE=UI-R-BS2-ben-b-04-0-UI /FEA=EST /CNT=8 /TID=Rn.18902.1 /TIER=Stack /STK=7 /UG=Rn.18902 /UG_TITLE=ESTs BF398160 1374159_at BM388029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388029 /DB_XREF=gi:18188082 /DB_XREF=UI-R-CN1-cjl-i-03-0-UI.s1 /CLONE=UI-R-CN1-cjl-i-03-0-UI /FEA=EST /CNT=8 /TID=Rn.13298.1 /TIER=Stack /STK=7 /UG=Rn.13298 /UG_TITLE=ESTs BM388029 ALS2 C-terminal like Als2cl 316017 XM_001076120 /// XM_002727139 /// XM_002729977 /// XM_236654 0007032 // endosome organization // not recorded /// 0008104 // protein localization // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017112 // Rab guanyl-nucleotide exchange factor activity // not recorded /// 0017137 // Rab GTPase binding // not recorded /// 0042802 // identical protein binding // not recorded 1374160_at BE111296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111296 /DB_XREF=gi:8503401 /DB_XREF=UI-R-BJ1-ava-b-05-0-UI.s1 /CLONE=UI-R-BJ1-ava-b-05-0-UI /FEA=EST /CNT=8 /TID=Rn.19339.1 /TIER=Stack /STK=7 /UG=Rn.19339 /UG_TITLE=ESTs BE111296 1374161_at AI104686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104686 /DB_XREF=gi:3708992 /DB_XREF=EST213975 /CLONE=RHECH64 /FEA=EST /CNT=8 /TID=Rn.17313.1 /TIER=Stack /STK=7 /UG=Rn.17313 /UG_TITLE=ESTs AI104686 importin 11 Ipo11 310056 XM_002725887 /// XM_226752 0006610 // ribosomal protein import into nucleus // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // not recorded 1374162_at AI112255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112255 /DB_XREF=gi:3512204 /DB_XREF=UI-R-Y0-mh-h-09-0-UI.s1 /CLONE=UI-R-Y0-mh-h-09-0-UI /FEA=EST /CNT=8 /TID=Rn.17670.1 /TIER=Stack /STK=7 /UG=Rn.17670 /UG_TITLE=ESTs AI112255 1374163_at BM389995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389995 /DB_XREF=gi:18190048 /DB_XREF=UI-R-CN1-cjo-i-16-0-UI.s1 /CLONE=UI-R-CN1-cjo-i-16-0-UI /FEA=EST /CNT=8 /TID=Rn.11524.1 /TIER=Stack /STK=7 /UG=Rn.11524 /UG_TITLE=ESTs BM389995 anaphase promoting complex subunit 4 Anapc4 305420 NM_001107220 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070979 // protein K11-linked ubiquitination // not recorded 0005654 // nucleoplasm // not recorded /// 0005680 // anaphase-promoting complex // not recorded /// 0005829 // cytosol // not recorded 1374164_at BF410020 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410020 /DB_XREF=gi:11397995 /DB_XREF=UI-R-CA0-bjs-f-01-0-UI.s1 /CLONE=UI-R-CA0-bjs-f-01-0-UI /FEA=EST /CNT=8 /TID=Rn.39004.1 /TIER=Stack /STK=7 /UG=Rn.39004 /UG_TITLE=ESTs BF410020 neurofascin Nfasc 116690 NM_001160313 /// NM_001160314 /// NM_001160315 /// NM_053909 0007155 // cell adhesion // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007422 // peripheral nervous system development // inferred from expression pattern /// 0042552 // myelination // inferred from expression pattern /// 0050808 // synapse organization // inferred from electronic annotation /// 0050808 // synapse organization // not recorded 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0033268 // node of Ranvier // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374165_at AA818264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818264 /DB_XREF=gi:4198775 /DB_XREF=UI-R-A0-ax-b-12-0-UI.s1 /CLONE=UI-R-A0-ax-b-12-0-UI /FEA=EST /CNT=8 /TID=Rn.1366.1 /TIER=Stack /STK=7 /UG=Rn.1366 /UG_TITLE=ESTs, Weakly similar to similar to GTPase-activating proteins (H.sapiens) AA818264 similar to Rasa4 protein RGD1565457 288589 XM_002724808 /// XM_002724809 /// XM_002724810 /// XM_002724811 /// XM_002727952 /// XM_002727953 /// XM_002727954 /// XM_002727955 0007165 // signal transduction // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation 1374166_at AW252076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252076 /DB_XREF=gi:6595667 /DB_XREF=UI-R-BJ0-adj-h-05-0-UI.s1 /CLONE=UI-R-BJ0-adj-h-05-0-UI /FEA=EST /CNT=8 /TID=Rn.27405.1 /TIER=Stack /STK=7 /UG=Rn.27405 /UG_TITLE=ESTs AW252076 1374167_at AW532828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532828 /DB_XREF=gi:7175242 /DB_XREF=UI-R-BU0-ams-f-09-0-UI.s1 /CLONE=UI-R-BU0-ams-f-09-0-UI /FEA=EST /CNT=8 /TID=Rn.26581.1 /TIER=Stack /STK=7 /UG=Rn.26581 /UG_TITLE=ESTs AW532828 neuritin 1-like Nrn1l 100189544 NM_001135006 1374168_at BE099608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099608 /DB_XREF=gi:8491486 /DB_XREF=UI-R-BJ1-atp-c-07-0-UI.s1 /CLONE=UI-R-BJ1-atp-c-07-0-UI /FEA=EST /CNT=8 /TID=Rn.15453.1 /TIER=Stack /STK=7 /UG=Rn.15453 /UG_TITLE=ESTs BE099608 1374169_at AI236128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236128 /DB_XREF=gi:3829634 /DB_XREF=EST232690 /CLONE=ROVDB74 /FEA=EST /CNT=8 /TID=Rn.2697.1 /TIER=Stack /STK=7 /UG=Rn.2697 /UG_TITLE=ESTs AI236128 similar to chromosome 16 open reading frame 5 RGD1310686 360480 NM_001008360 0006915 // apoptosis // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0033209 // tumor necrosis factor-mediated signaling pathway // not recorded /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded 0005634 // nucleus // not recorded 1374170_at AI172069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172069 /DB_XREF=gi:3712109 /DB_XREF=EST218064 /CLONE=RMUBU52 /FEA=EST /CNT=8 /TID=Rn.15339.1 /TIER=Stack /STK=7 /UG=Rn.15339 /UG_TITLE=ESTs AI172069 Traf and Tnf receptor associated protein Ttrap 498749 NM_001034947 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // not recorded /// 0006302 // double-strand break repair // inferred from sequence or structural similarity /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0016605 // PML body // not recorded /// 0016605 // PML body // inferred from sequence or structural similarity /// 0016605 // PML body // inferred from electronic annotation 0004518 // nuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070260 // 5'-tyrosyl-DNA phosphodiesterase activity // not recorded /// 0070260 // 5'-tyrosyl-DNA phosphodiesterase activity // inferred from sequence or structural similarity /// 0070260 // 5'-tyrosyl-DNA phosphodiesterase activity // inferred from electronic annotation 1374171_at AI170507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170507 /DB_XREF=gi:3710547 /DB_XREF=EST216435 /CLONE=RLUCO58 /FEA=EST /CNT=8 /TID=Rn.6425.1 /TIER=Stack /STK=7 /UG=Rn.6425 /UG_TITLE=ESTs AI170507 ATP-binding cassette, sub-family C, member 9-like LOC100360403 100360403 XM_002729420 0055085 // transmembrane transport // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 1374172_at AI010883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010883 /DB_XREF=gi:3224715 /DB_XREF=EST205334 /CLONE=RMUAT78 /FEA=EST /CNT=8 /TID=Rn.12548.1 /TIER=Stack /STK=7 /UG=Rn.12548 /UG_TITLE=ESTs AI010883 1374173_at AA799841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799841 /DB_XREF=gi:4131445 /DB_XREF=EST189338 /CLONE=RHEAG04 /FEA=EST /CNT=8 /TID=Rn.17146.1 /TIER=Stack /STK=7 /UG=Rn.17146 /UG_TITLE=ESTs, Weakly similar to BETA-HEXOSAMINIDASE BETA CHAIN PRECURSOR (M.musculus) AA799841 1374174_at AI555195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555195 /DB_XREF=gi:4487558 /DB_XREF=UI-R-C2p-qt-h-06-0-UI.s1 /CLONE=UI-R-C2p-qt-h-06-0-UI /FEA=EST /CNT=8 /TID=Rn.38372.1 /TIER=Stack /STK=7 /UG=Rn.38372 /UG_TITLE=ESTs AI555195 1374175_at BI289635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289635 /DB_XREF=gi:14947406 /DB_XREF=UI-R-DK0-cfi-c-10-0-UI.s1 /CLONE=UI-R-DK0-cfi-c-10-0-UI /FEA=EST /CNT=8 /TID=Rn.22430.1 /TIER=Stack /STK=7 /UG=Rn.22430 /UG_TITLE=ESTs BI289635 porcupine homolog (Drosophila) Porcn 317368 NM_001173355 /// XM_001063037 /// XM_228781 0009100 // glycoprotein metabolic process // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded 0005515 // protein binding // not recorded 1374176_at AI408727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408727 /DB_XREF=gi:4252231 /DB_XREF=EST237018 /CLONE=ROVEG40 /FEA=EST /CNT=8 /TID=Rn.36366.1 /TIER=Stack /STK=7 /UG=Rn.36366 /UG_TITLE=ESTs AI408727 similar to DNA segment, Chr 4, Brigham & Womens Genetics 0951 expressed RGD1308059 362535 NM_001025022 1374177_at AI230912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230912 /DB_XREF=gi:3814799 /DB_XREF=EST227607 /CLONE=REMDC89 /FEA=EST /CNT=8 /TID=Rn.15054.1 /TIER=Stack /STK=7 /UG=Rn.15054 /UG_TITLE=ESTs AI230912 TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor Taf13 310784 NM_001107716 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005669 // transcription factor TFIID complex // inferred from electronic annotation /// 0005669 // transcription factor TFIID complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded 1374178_at AI103954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103954 /DB_XREF=gi:3708417 /DB_XREF=EST213243 /CLONE=RHEBV55 /FEA=EST /CNT=8 /TID=Rn.18208.1 /TIER=Stack /STK=7 /UG=Rn.18208 /UG_TITLE=ESTs AI103954 1374179_at BF285334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285334 /DB_XREF=gi:11216404 /DB_XREF=EST449925 /CLONE=RGIFD65 /FEA=EST /CNT=8 /TID=Rn.1386.1 /TIER=Stack /STK=7 /UG=Rn.1386 /UG_TITLE=ESTs BF285334 1374180_at AI236753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236753 /DB_XREF=gi:4136236 /DB_XREF=EST233315 /CLONE=ROVDK16 /FEA=EST /CNT=8 /TID=Rn.3361.1 /TIER=Stack /STK=7 /UG=Rn.3361 /UG_TITLE=ESTs AI236753 1374181_at BF290678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290678 /DB_XREF=gi:11221748 /DB_XREF=EST455269 /CLONE=RGIHX83 /FEA=EST /CNT=8 /TID=Rn.40449.1 /TIER=Stack /STK=7 /UG=Rn.40449 /UG_TITLE=ESTs BF290678 RNA binding motif protein, X-linked Rbmx 302855 NM_001025663 0006376 // mRNA splice site selection // inferred from mutant phenotype /// 0008380 // RNA splicing // not recorded /// 0045941 // positive regulation of transcription // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay 1374182_at AA965063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965063 /DB_XREF=gi:4279937 /DB_XREF=UI-R-C0-ha-h-06-0-UI.s1 /CLONE=UI-R-C0-ha-h-06-0-UI /FEA=EST /CNT=8 /TID=Rn.11993.1 /TIER=Stack /STK=7 /UG=Rn.11993 /UG_TITLE=ESTs, Moderately similar to T30967 transcription activator SRG3 - mouse (M.musculus) AA965063 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 Smarcc1 301020 NM_001106861 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006338 // chromatin remodeling // not recorded /// 0008286 // insulin receptor signaling pathway // not recorded /// 0009887 // organ morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0000785 // chromatin // inferred from electronic annotation /// 0001741 // XY body // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016514 // SWI/SNF complex // not recorded /// 0070603 // SWI/SNF-type complex // not recorded /// 0071564 // npBAF complex // not recorded /// 0071565 // nBAF complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0005515 // protein binding // not recorded /// 0047485 // protein N-terminus binding // not recorded 1374183_at AI705068 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI705068 /DB_XREF=gi:4992968 /DB_XREF=UI-R-G0-uj-g-06-0-UI.s2 /CLONE=UI-R-G0-uj-g-06-0-UI /FEA=EST /CNT=8 /TID=Rn.41077.1 /TIER=Stack /STK=7 /UG=Rn.41077 /UG_TITLE=ESTs, Weakly similar to F48E8.2.p (Caenorhabditis elegans) (C.elegans) AI705068 E2F-associated phosphoprotein Eapp 299043 NM_001106729 /// NM_001134987 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation 1374184_at BF405027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405027 /DB_XREF=gi:11393002 /DB_XREF=UI-R-CA1-bio-f-09-0-UI.s1 /CLONE=UI-R-CA1-bio-f-09-0-UI /FEA=EST /CNT=8 /TID=Rn.64287.1 /TIER=Stack /STK=7 /UG=Rn.64287 /UG_TITLE=ESTs BF405027 similar to CG8043-PA RGD1306000 363611 NM_001108827 0006546 // glycine catabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0004047 // aminomethyltransferase activity // inferred from electronic annotation 1374185_at AI232819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232819 /DB_XREF=gi:3816699 /DB_XREF=EST229507 /CLONE=RKICH06 /FEA=EST /CNT=8 /TID=Rn.54595.1 /TIER=Stack /STK=7 /UG=Rn.54595 /UG_TITLE=ESTs AI232819 thioredoxin domain containing 11 Txndc11 302899 NM_001127532 0045454 // cell redox homeostasis // inferred from electronic annotation 1374186_at BE109362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109362 /DB_XREF=gi:8501467 /DB_XREF=UI-R-BJ1-aur-b-07-0-UI.s1 /CLONE=UI-R-BJ1-aur-b-07-0-UI /FEA=EST /CNT=8 /TID=Rn.1637.1 /TIER=Stack /STK=7 /UG=Rn.1637 /UG_TITLE=ESTs BE109362 leucine rich repeat containing 47 Lrrc47 362672 NM_001135666 0006412 // translation // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0004826 // phenylalanine-tRNA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1374187_at AI233361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233361 /DB_XREF=gi:3817241 /DB_XREF=EST230049 /CLONE=RKIDE08 /FEA=EST /CNT=8 /TID=Rn.24718.1 /TIER=Stack /STK=7 /UG=Rn.24718 /UG_TITLE=ESTs AI233361 1374188_at AI103194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103194 /DB_XREF=gi:3707761 /DB_XREF=EST212483 /CLONE=REMBY32 /FEA=EST /CNT=8 /TID=Rn.25157.1 /TIER=Stack /STK=7 /UG=Rn.25157 /UG_TITLE=ESTs, Highly similar to JC5279 translocation protein 1 (H.sapiens) AI103194 SEC62 homolog (S. cerevisiae) Sec62 294912 NM_001034129 0015031 // protein transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016235 // aggresome // inferred from electronic annotation /// 0016235 // aggresome // not recorded /// 0045111 // intermediate filament cytoskeleton // inferred from electronic annotation /// 0045111 // intermediate filament cytoskeleton // not recorded 0008565 // protein transporter activity // inferred from electronic annotation 1374189_at BG668883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668883 /DB_XREF=gi:13890805 /DB_XREF=DRN02G04 /CLONE=DRN02G04 /FEA=EST /CNT=8 /TID=Rn.47120.1 /TIER=Stack /STK=7 /UG=Rn.47120 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) BG668883 zinc finger protein 219 Zfp219 305848 NM_001007681 0006351 // transcription, DNA-dependent // not recorded /// 0006351 // transcription, DNA-dependent // inferred from sequence or structural similarity /// 0006351 // transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from electronic annotation 1374190_at BG380750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380750 /DB_XREF=gi:13305222 /DB_XREF=UI-R-CT0-bub-a-05-0-UI.s1 /CLONE=UI-R-CT0-bub-a-05-0-UI /FEA=EST /CNT=8 /TID=Rn.44095.1 /TIER=Stack /STK=7 /UG=Rn.44095 /UG_TITLE=ESTs, Weakly similar to T18818 hypothetical protein C01G10.7 - Caenorhabditis elegans (C.elegans) BG380750 citrate lyase beta like Clybl 306198 NM_001100685 0006725 // cellular aromatic compound metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0009346 // citrate lyase complex // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008815 // citrate (pro-3S)-lyase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016830 // carbon-carbon lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374191_at AA956764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956764 /DB_XREF=gi:4239238 /DB_XREF=UI-R-E1-fr-e-10-0-UI.s1 /CLONE=UI-R-E1-fr-e-10-0-UI /FEA=EST /CNT=8 /TID=Rn.6381.1 /TIER=Stack /STK=7 /UG=Rn.6381 /UG_TITLE=ESTs AA956764 rhomboid 5 homolog 1 (Drosophila) Rhbdf1 303008 NM_001030034 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004252 // serine-type endopeptidase activity // inferred from electronic annotation 1374192_at BE105137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105137 /DB_XREF=gi:8497238 /DB_XREF=UI-R-BX0-asg-h-06-0-UI.s1 /CLONE=UI-R-BX0-asg-h-06-0-UI /FEA=EST /CNT=8 /TID=Rn.28070.1 /TIER=Stack /STK=7 /UG=Rn.28070 /UG_TITLE=ESTs BE105137 bassoon Bsn 29138 NM_019146 0007010 // cytoskeleton organization // non-traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0048786 // presynaptic active zone // inferred from electronic annotation /// 0048786 // presynaptic active zone // not recorded 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374193_at BI303636 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303636 /DB_XREF=gi:14979916 /DB_XREF=UI-R-DQ0-cja-j-12-0-UI.s1 /CLONE=UI-R-DQ0-cja-j-12-0-UI /FEA=EST /CNT=15 /TID=Rn.2723.1 /TIER=Stack /STK=7 /UG=Rn.2723 /UG_TITLE=ESTs BI303636 1374194_at AI170007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170007 /DB_XREF=gi:3710047 /DB_XREF=EST215923 /CLONE=RLIAY48 /FEA=EST /CNT=15 /TID=Rn.24756.1 /TIER=Stack /STK=7 /UG=Rn.24756 /UG_TITLE=ESTs AI170007 1374195_at AA799544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799544 /DB_XREF=gi:2862499 /DB_XREF=EST189041 /CLONE=RHEAC36 /FEA=EST /CNT=11 /TID=Rn.24915.1 /TIER=Stack /STK=7 /UG=Rn.24915 /UG_TITLE=ESTs, Moderately similar to LAD1_MOUSE LADININ 1 (LAD-1) (LINEAR IGA DISEASE AUTOANTIGEN) (M.musculus) AA799544 ladinin 1 Lad1 313325 NM_001107942 1374196_at AI710389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI710389 /DB_XREF=gi:5000165 /DB_XREF=UI-R-AG1-aaj-c-01-0-UI.s1 /CLONE=UI-R-AG1-aaj-c-01-0-UI /FEA=EST /CNT=10 /TID=Rn.38972.1 /TIER=Stack /STK=7 /UG=Rn.38972 /UG_TITLE=ESTs AI710389 LanC lantibiotic synthetase component C-like 1 (bacterial) Lancl1 114515 NM_053723 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded /// 0043295 // glutathione binding // not recorded /// 0043295 // glutathione binding // inferred from sequence or structural similarity /// 0043295 // glutathione binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050750 // low-density lipoprotein receptor binding // inferred from electronic annotation /// 0050750 // low-density lipoprotein receptor binding // not recorded 1374197_at AI177275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177275 /DB_XREF=gi:4134969 /DB_XREF=EST220890 /CLONE=ROVCF13 /FEA=EST /CNT=9 /TID=Rn.13739.1 /TIER=Stack /STK=7 /UG=Rn.13739 /UG_TITLE=ESTs AI177275 1374198_at BF398424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398424 /DB_XREF=gi:11383414 /DB_XREF=UI-R-BS2-beo-g-01-0-UI.s1 /CLONE=UI-R-BS2-beo-g-01-0-UI /FEA=EST /CNT=9 /TID=Rn.36105.1 /TIER=Stack /STK=7 /UG=Rn.36105 /UG_TITLE=ESTs BF398424 Cd276 molecule Cd276 315716 NM_182824 0030501 // positive regulation of bone mineralization // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0042110 // T cell activation // inferred from electronic annotation /// 0042110 // T cell activation // not recorded /// 0042130 // negative regulation of T cell proliferation // inferred from electronic annotation /// 0042130 // negative regulation of T cell proliferation // not recorded /// 0045077 // negative regulation of interferon-gamma biosynthetic process // inferred from electronic annotation /// 0045077 // negative regulation of interferon-gamma biosynthetic process // not recorded /// 0045078 // positive regulation of interferon-gamma biosynthetic process // inferred from electronic annotation /// 0045078 // positive regulation of interferon-gamma biosynthetic process // not recorded /// 0045085 // negative regulation of interleukin-2 biosynthetic process // inferred from electronic annotation /// 0045085 // negative regulation of interleukin-2 biosynthetic process // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // not recorded /// 0050776 // regulation of immune response // inferred from electronic annotation /// 0050776 // regulation of immune response // not recorded 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1374199_at BI282130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282130 /DB_XREF=gi:14932569 /DB_XREF=UI-R-CU0s-cbw-h-10-0-UI.s1 /CLONE=UI-R-CU0s-cbw-h-10-0-UI /FEA=EST /CNT=9 /TID=Rn.39.1 /TIER=Stack /STK=7 /UG=Rn.39 /UG_TITLE=ESTs, Highly similar to Y184_HUMAN HYPOTHETICAL PROTEIN KIAA0184 (H.sapiens) BI282130 DIP2 disco-interacting protein 2 homolog A (Drosophila) Dip2a 690211 NM_001191564 /// XM_001070526 /// XM_002725858 /// XM_002728934 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation 1374200_at BM392280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392280 /DB_XREF=gi:18192333 /DB_XREF=UI-R-DO1-ckp-p-05-0-UI.s1 /CLONE=UI-R-DO1-ckp-p-05-0-UI /FEA=EST /CNT=9 /TID=Rn.22048.1 /TIER=Stack /STK=7 /UG=Rn.22048 /UG_TITLE=ESTs, Weakly similar to ENT1_RAT EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 1 (EQUILIBRATIVE NITROBENZYLMERCAPTOPURINE RIBOSIDE-SENSITIVE NUCLEOSIDE TRANSPORTER) (EQUILIBRATIVE NBMPR-SENSITIVE NUCLEOSIDE TRANSPORTER) (NUCLEOSIDE TRANSPORTER, ES-TYPE) (R.norvegicus) BM392280 solute carrier family 29 (nucleoside transporters), member 3 Slc29a3 353307 NM_181639 0006810 // transport // inferred from electronic annotation /// 0015858 // nucleoside transport // inferred from mutant phenotype 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0005337 // nucleoside transmembrane transporter activity // inferred from mutant phenotype /// 0005337 // nucleoside transmembrane transporter activity // inferred from electronic annotation 1374201_at AI712727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712727 /DB_XREF=gi:5016527 /DB_XREF=UI-R-AF1-aau-g-08-0-UI.s1 /CLONE=UI-R-AF1-aau-g-08-0-UI /FEA=EST /CNT=9 /TID=Rn.35078.1 /TIER=Stack /STK=7 /UG=Rn.35078 /UG_TITLE=ESTs, Weakly similar to Sid3177p (M.musculus) AI712727 alanyl-tRNA synthetase domain containing 1-like LOC100366224 100366224 XM_002724564 1374202_at BM389779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389779 /DB_XREF=gi:18189832 /DB_XREF=UI-R-CN1-cjp-b-21-0-UI.s1 /CLONE=UI-R-CN1-cjp-b-21-0-UI /FEA=EST /CNT=9 /TID=Rn.27050.1 /TIER=Stack /STK=7 /UG=Rn.27050 /UG_TITLE=ESTs BM389779 1374203_at BM385279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385279 /DB_XREF=gi:18185332 /DB_XREF=UI-R-EB1-clf-j-22-0-UI.s1 /CLONE=UI-R-EB1-clf-j-22-0-UI /FEA=EST /CNT=9 /TID=Rn.12745.1 /TIER=Stack /STK=7 /UG=Rn.12745 /UG_TITLE=ESTs BM385279 1374204_at BM388946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388946 /DB_XREF=gi:18188999 /DB_XREF=UI-R-DZ0-ckn-n-19-0-UI.s1 /CLONE=UI-R-DZ0-ckn-n-19-0-UI /FEA=EST /CNT=8 /TID=Rn.18535.1 /TIER=Stack /STK=7 /UG=Rn.18535 /UG_TITLE=ESTs, Moderately similar to T14773 hypothetical protein DKFZp564B0482.1 (H.sapiens) BM388946 WD repeat and SOCS box-containing 1 Wsb1 303336 NM_001025664 /// NM_001042561 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1374205_at BI284455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284455 /DB_XREF=gi:14937149 /DB_XREF=UI-R-CX0s-ccr-c-07-0-UI.s1 /CLONE=UI-R-CX0s-ccr-c-07-0-UI /FEA=EST /CNT=8 /TID=Rn.3147.1 /TIER=Stack /STK=7 /UG=Rn.3147 /UG_TITLE=ESTs BI284455 purine rich element binding protein B Purb 498407 NM_001017503 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005662 // DNA replication factor A complex // inferred from sequence or structural similarity 0000900 // translation repressor activity, nucleic acid binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // not recorded /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003697 // single-stranded DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003729 // mRNA binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from sequence or structural similarity /// 0016566 // specific transcriptional repressor activity // inferred from direct assay /// 0032422 // purine-rich negative regulatory element binding // inferred from direct assay /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046332 // SMAD binding // not recorded 1374206_at BI280278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280278 /DB_XREF=gi:14928902 /DB_XREF=UI-R-DE0-cag-a-11-0-UI.s1 /CLONE=UI-R-DE0-cag-a-11-0-UI /FEA=EST /CNT=8 /TID=Rn.44101.1 /TIER=Stack /STK=7 /UG=Rn.44101 /UG_TITLE=ESTs BI280278 similar to hypothetical protein DKFZp434A1319 RGD1307357 291975 NM_001106180 0015630 // microtubule cytoskeleton // not recorded 0005515 // protein binding // not recorded 1374207_at BI275292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275292 /DB_XREF=gi:14887001 /DB_XREF=UI-R-CX0-bwr-g-07-0-UI.s1 /CLONE=UI-R-CX0-bwr-g-07-0-UI /FEA=EST /CNT=8 /TID=Rn.9048.1 /TIER=Stack /STK=7 /UG=Rn.9048 /UG_TITLE=ESTs, Highly similar to AGP2_RAT ANGIOPOIETIN-2 (ANG-2) (R.norvegicus) BI275292 angiopoietin 2 Angpt2 89805 NM_134454 0001525 // angiogenesis // inferred from expression pattern /// 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007281 // germ cell development // inferred from expression pattern /// 0009314 // response to radiation // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010812 // negative regulation of cell-substrate adhesion // inferred from electronic annotation /// 0010812 // negative regulation of cell-substrate adhesion // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014823 // response to activity // inferred from expression pattern /// 0016525 // negative regulation of angiogenesis // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from expression pattern /// 0043537 // negative regulation of blood vessel endothelial cell migration // inferred from electronic annotation /// 0043537 // negative regulation of blood vessel endothelial cell migration // not recorded /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0048014 // Tie receptor signaling pathway // inferred from electronic annotation /// 0048014 // Tie receptor signaling pathway // not recorded /// 0048514 // blood vessel morphogenesis // not recorded /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0050928 // negative regulation of positive chemotaxis // inferred from electronic annotation /// 0050928 // negative regulation of positive chemotaxis // not recorded /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0060135 // maternal process involved in female pregnancy // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0042995 // cell projection // inferred from direct assay 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030971 // receptor tyrosine kinase binding // inferred from electronic annotation /// 0030971 // receptor tyrosine kinase binding // not recorded 1374208_at BE116569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116569 /DB_XREF=gi:8508674 /DB_XREF=UI-R-BS1-ayj-g-06-0-UI.s1 /CLONE=UI-R-BS1-ayj-g-06-0-UI /FEA=EST /CNT=8 /TID=Rn.15835.1 /TIER=Stack /STK=7 /UG=Rn.15835 /UG_TITLE=ESTs BE116569 zinc finger CCCH type containing 7 A Zc3h7a 360466 NM_001108262 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374209_at AI010575 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010575 /DB_XREF=gi:3224407 /DB_XREF=EST205026 /CLONE=RMUAO63 /FEA=EST /CNT=8 /TID=Rn.12619.1 /TIER=Stack /STK=7 /UG=Rn.12619 /UG_TITLE=ESTs, Weakly similar to T32896 hypothetical protein C42C1.9 - Caenorhabditis elegans (C.elegans) AI010575 ER lipid raft associated 2 Erlin2 290823 NM_001106088 0030433 // ER-associated protein catabolic process // inferred from electronic annotation /// 0030433 // ER-associated protein catabolic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374210_at BM383870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383870 /DB_XREF=gi:18183923 /DB_XREF=UI-R-DM1-ckc-g-10-0-UI.s1 /CLONE=UI-R-DM1-ckc-g-10-0-UI /FEA=EST /CNT=8 /TID=Rn.17063.1 /TIER=Stack /STK=7 /UG=Rn.17063 /UG_TITLE=ESTs BM383870 non-SMC element 1 homolog (S. cerevisiae) Nsmce1 361645 NM_001039611 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374211_at BG380798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380798 /DB_XREF=gi:13305270 /DB_XREF=UI-R-CT0-bub-e-08-0-UI.s1 /CLONE=UI-R-CT0-bub-e-08-0-UI /FEA=EST /CNT=8 /TID=Rn.19401.1 /TIER=Stack /STK=7 /UG=Rn.19401 /UG_TITLE=ESTs BG380798 similar to Hypothetical protein LOC73072 RGD1566084 501795 XM_001065129 /// XM_577204 1374212_at AI012753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012753 /DB_XREF=gi:3226585 /DB_XREF=EST207204 /CLONE=RPLBB24 /FEA=EST /CNT=8 /TID=Rn.14344.1 /TIER=Stack /STK=7 /UG=Rn.14344 /UG_TITLE=ESTs AI012753 1374213_at BM384718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384718 /DB_XREF=gi:18184771 /DB_XREF=UI-R-CN1-cjl-f-05-0-UI.s2 /CLONE=UI-R-CN1-cjl-f-05-0-UI /FEA=EST /CNT=8 /TID=Rn.35369.1 /TIER=Stack /STK=7 /UG=Rn.35369 /UG_TITLE=ESTs, Moderately similar to T17241 hypothetical protein DKFZp434L057.1 (H.sapiens) BM384718 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) Arfgef2 296380 NM_181083 0006887 // exocytosis // inferred from mutant phenotype /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // not recorded /// 0032012 // regulation of ARF protein signal transduction // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0000139 // Golgi membrane // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from mutant phenotype /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // traceable author statement /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005086 // ARF guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0017022 // myosin binding // inferred from physical interaction /// 0050811 // GABA receptor binding // inferred from mutant phenotype 1374214_at AI235359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235359 /DB_XREF=gi:3828865 /DB_XREF=EST231921 /CLONE=ROVCQ85 /FEA=EST /CNT=8 /TID=Rn.18988.1 /TIER=Stack /STK=7 /UG=Rn.18988 /UG_TITLE=ESTs AI235359 1374215_at AA848429 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848429 /DB_XREF=gi:2935969 /DB_XREF=EST191189 /CLONE=RKIAC31 /FEA=EST /CNT=8 /TID=Rn.35497.1 /TIER=Stack /STK=7 /UG=Rn.35497 /UG_TITLE=ESTs AA848429 pleckstrin homology domain containing, family J member 1 Plekhj1 314634 NM_001108072 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374216_at BI280277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280277 /DB_XREF=gi:14928900 /DB_XREF=UI-R-DE0-cag-a-10-0-UI.s1 /CLONE=UI-R-DE0-cag-a-10-0-UI /FEA=EST /CNT=8 /TID=Rn.24598.1 /TIER=Stack /STK=7 /UG=Rn.24598 /UG_TITLE=ESTs BI280277 1374217_at BG375463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375463 /DB_XREF=gi:13299935 /DB_XREF=UI-R-CV1-btb-f-07-0-UI.s1 /CLONE=UI-R-CV1-btb-f-07-0-UI /FEA=EST /CNT=8 /TID=Rn.2697.2 /TIER=Stack /STK=7 /UG=Rn.2697 /UG_TITLE=ESTs BG375463 similar to chromosome 16 open reading frame 5 RGD1310686 360480 NM_001008360 0006915 // apoptosis // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0033209 // tumor necrosis factor-mediated signaling pathway // not recorded /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded 0005634 // nucleus // not recorded 1374218_at BG379491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379491 /DB_XREF=gi:13303963 /DB_XREF=UI-R-CS0-bth-e-07-0-UI.s1 /CLONE=UI-R-CS0-bth-e-07-0-UI /FEA=EST /CNT=8 /TID=Rn.12018.1 /TIER=Stack /STK=7 /UG=Rn.12018 /UG_TITLE=ESTs BG379491 Similar to IQ motif and Sec7 domain 2 LOC685244 685244 XM_002727537 /// XM_002727538 /// XM_002730218 0032012 // regulation of ARF protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005086 // ARF guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1374219_at BI295135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295135 /DB_XREF=gi:14958278 /DB_XREF=UI-R-DK0-ceg-c-01-0-UI.s1 /CLONE=UI-R-DK0-ceg-c-01-0-UI /FEA=EST /CNT=8 /TID=Rn.41748.1 /TIER=Stack /STK=7 /UG=Rn.41748 /UG_TITLE=ESTs, Weakly similar to T42693 hypothetical protein DKFZp434I0428.1 (H.sapiens) BI295135 dispatched homolog 1 (Drosophila) Disp1 289338 NM_001105983 0007224 // smoothened signaling pathway // not recorded /// 0007225 // patched ligand maturation // not recorded /// 0007368 // determination of left/right symmetry // not recorded /// 0007389 // pattern specification process // not recorded /// 0009880 // embryonic pattern specification // not recorded /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0015833 // peptide transport // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008158 // hedgehog receptor activity // inferred from electronic annotation /// 0015197 // peptide transporter activity // not recorded 1374220_at AI599176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599176 /DB_XREF=gi:4608224 /DB_XREF=EST250879 /CLONE=REMET54 /FEA=EST /CNT=8 /TID=Rn.65539.1 /TIER=Stack /STK=7 /UG=Rn.65539 /UG_TITLE=ESTs AI599176 cyclin Y Ccny 361261 NM_001191833 /// XM_001065252 /// XM_341545 0000086 // G2/M transition of mitotic cell cycle // not recorded /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // not recorded /// 0060828 // regulation of canonical Wnt receptor signaling pathway // not recorded 0000308 // cytoplasmic cyclin-dependent protein kinase holoenzyme complex // not recorded /// 0005634 // nucleus // not recorded /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // not recorded /// 0016538 // cyclin-dependent protein kinase regulator activity // not recorded 1374221_at BM385468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385468 /DB_XREF=gi:18185521 /DB_XREF=UI-R-CN1-clv-p-08-0-UI.s1 /CLONE=UI-R-CN1-clv-p-08-0-UI /FEA=EST /CNT=8 /TID=Rn.15870.1 /TIER=Stack /STK=7 /UG=Rn.15870 /UG_TITLE=ESTs BM385468 Solute carrier family 29 (nucleoside transporters), member 3 Slc29a3 353307 NM_181639 0006810 // transport // inferred from electronic annotation /// 0015858 // nucleoside transport // inferred from mutant phenotype 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0005337 // nucleoside transmembrane transporter activity // inferred from mutant phenotype /// 0005337 // nucleoside transmembrane transporter activity // inferred from electronic annotation 1374222_at BM391436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391436 /DB_XREF=gi:18191489 /DB_XREF=UI-R-DY0-ckr-e-21-0-UI.s1 /CLONE=UI-R-DY0-ckr-e-21-0-UI /FEA=EST /CNT=8 /TID=Rn.3575.1 /TIER=Stack /STK=7 /UG=Rn.3575 /UG_TITLE=ESTs BM391436 solute carrier family 22, member 18 Slc22a18 309131 NM_001004260 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015893 // drug transport // inferred from electronic annotation /// 0015893 // drug transport // not recorded /// 0015904 // tetracycline transport // inferred from electronic annotation /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005635 // nuclear envelope // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0044444 // cytoplasmic part // inferred from electronic annotation /// 0044444 // cytoplasmic part // not recorded 0015238 // drug transmembrane transporter activity // inferred from electronic annotation /// 0015238 // drug transmembrane transporter activity // not recorded /// 0015293 // symporter activity // inferred from electronic annotation /// 0015520 // tetracycline:hydrogen antiporter activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded 1374223_at BG371547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371547 /DB_XREF=gi:13268084 /DB_XREF=UI-R-CW0-bvw-f-08-0-UI.s1 /CLONE=UI-R-CW0-bvw-f-08-0-UI /FEA=EST /CNT=8 /TID=Rn.19635.1 /TIER=Stack /STK=7 /UG=Rn.19635 /UG_TITLE=ESTs BG371547 1374224_at AI169164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169164 /DB_XREF=gi:3705472 /DB_XREF=EST214998 /CLONE=RKIBO33 /FEA=EST /CNT=8 /TID=Rn.8333.1 /TIER=Stack /STK=7 /UG=Rn.8333 /UG_TITLE=ESTs, Highly similar to T46924 probable translation initiation factor eIF-2alpha kinase (H.sapiens) AI169164 eukaryotic translation initiation factor 2 alpha kinase 4 Eif2ak4 114859 NM_001105744 0006412 // translation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0009267 // cellular response to starvation // not recorded /// 0017148 // negative regulation of translation // not recorded /// 0030968 // endoplasmic reticulum unfolded protein response // not recorded /// 0043558 // regulation of translational initiation in response to stress // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004694 // eukaryotic translation initiation factor 2alpha kinase activity // not recorded /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1374225_at BE112921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112921 /DB_XREF=gi:8505026 /DB_XREF=UI-R-BJ1-awa-d-06-0-UI.s1 /CLONE=UI-R-BJ1-awa-d-06-0-UI /FEA=EST /CNT=8 /TID=Rn.27063.1 /TIER=Stack /STK=7 /UG=Rn.27063 /UG_TITLE=ESTs BE112921 similar to chromosome 14 open reading frame 145 LOC500700 500700 XR_006574 /// XR_085864 1374226_at AI408498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408498 /DB_XREF=gi:4252002 /DB_XREF=EST236788 /CLONE=ROVEO92 /FEA=EST /CNT=8 /TID=Rn.24307.1 /TIER=Stack /STK=7 /UG=Rn.24307 /UG_TITLE=ESTs, Weakly similar to ALZHEIMERS DISEASE AMYLOID A4 PROTEIN HOMOLOG PRECURSOR (R.norvegicus) AI408498 procollagen, type VII, alpha 1 Col7a1 301012 NM_001106858 1374227_at BM386851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386851 /DB_XREF=gi:18186904 /DB_XREF=UI-R-CN1-cjh-o-04-0-UI.s1 /CLONE=UI-R-CN1-cjh-o-04-0-UI /FEA=EST /CNT=8 /TID=Rn.13205.1 /TIER=Stack /STK=7 /UG=Rn.13205 /UG_TITLE=ESTs BM386851 tetratricopeptide repeat domain 27 Ttc27 298782 NM_001106706 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374228_at BE113215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113215 /DB_XREF=gi:8505320 /DB_XREF=UI-R-BJ1-awc-h-07-0-UI.s1 /CLONE=UI-R-BJ1-awc-h-07-0-UI /FEA=EST /CNT=8 /TID=Rn.9304.1 /TIER=Stack /STK=7 /UG=Rn.9304 /UG_TITLE=ESTs BE113215 tripartite motif-containing 47 Trim47 690374 NM_001109585 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374229_at BF411135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411135 /DB_XREF=gi:11399110 /DB_XREF=UI-R-BT1-bmm-d-02-0-UI.s1 /CLONE=UI-R-BT1-bmm-d-02-0-UI /FEA=EST /CNT=8 /TID=Rn.18529.1 /TIER=Stack /STK=7 /UG=Rn.18529 /UG_TITLE=ESTs BF411135 signal peptide peptidase-like 2B Sppl2b 362828 NM_001014200 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1374230_at BI395805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI395805 /DB_XREF=gi:15091389 /DB_XREF=EST531739 /CLONE=RGICM35 /FEA=EST /CNT=8 /TID=Rn.22138.1 /TIER=Stack /STK=7 /UG=Rn.22138 /UG_TITLE=ESTs BI395805 Similar to mKIAA1429 protein RGD1559904 313061 NM_001107915 1374231_at AI103472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103472 /DB_XREF=gi:3708012 /DB_XREF=EST212761 /CLONE=REMCC42 /FEA=EST /CNT=8 /TID=Rn.18431.1 /TIER=Stack /STK=7 /UG=Rn.18431 /UG_TITLE=ESTs AI103472 Kruppel-like factor 16 Klf16 690820 NM_001127604 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0007212 // dopamine receptor signaling pathway // not recorded 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1374232_at BI290699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290699 /DB_XREF=gi:14949514 /DB_XREF=UI-R-DK0-cfy-d-04-0-UI.s1 /CLONE=UI-R-DK0-cfy-d-04-0-UI /FEA=EST /CNT=8 /TID=Rn.44193.1 /TIER=Stack /STK=7 /UG=Rn.44193 /UG_TITLE=ESTs, Highly similar to P11A MOUSE PHOSPHATIDYLINOSITOL 3-KINASE CATALYTIC SUBUNIT, ALPHA ISOFORM (M.musculus) BI290699 phosphoinositide-3-kinase, catalytic, alpha polypeptide Pik3ca 170911 NM_133399 /// XM_001059350 /// XM_001063573 0006006 // glucose metabolic process // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0040014 // regulation of multicellular organism growth // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043491 // protein kinase B signaling cascade // not recorded /// 0046854 // phosphoinositide phosphorylation // inferred from direct assay /// 0046854 // phosphoinositide phosphorylation // not recorded /// 0046854 // phosphoinositide phosphorylation // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation 0005829 // cytosol // not recorded /// 0005942 // phosphoinositide 3-kinase complex // inferred from direct assay /// 0005942 // phosphoinositide 3-kinase complex // not recorded /// 0030027 // lamellipodium // not recorded 0004428 // inositol or phosphatidylinositol kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from direct assay /// 0016303 // 1-phosphatidylinositol-3-kinase activity // not recorded /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0043560 // insulin receptor substrate binding // not recorded /// 0046934 // phosphatidylinositol-4,5-bisphosphate 3-kinase activity // not recorded 1374233_at BG372723 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372723 /DB_XREF=gi:13269260 /DB_XREF=UI-R-CV1-brz-g-05-0-UI.s1 /CLONE=UI-R-CV1-brz-g-05-0-UI /FEA=EST /CNT=8 /TID=Rn.7621.1 /TIER=Stack /STK=7 /UG=Rn.7621 /UG_TITLE=ESTs BG372723 family with sequence similarity 45, member A Fam45a 308009 NM_001127681 1374234_at AI073183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073183 /DB_XREF=gi:3399377 /DB_XREF=UI-R-Y0-mi-g-03-0-UI.s1 /CLONE=UI-R-Y0-mi-g-03-0-UI /FEA=EST /CNT=8 /TID=Rn.20379.1 /TIER=Stack /STK=7 /UG=Rn.20379 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) AI073183 zinc finger and BTB domain containing 48 Zbtb48 362668 NM_001013216 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374235_at AI138048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI138048 /DB_XREF=gi:3638825 /DB_XREF=UI-R-C2p-oi-g-06-0-UI.s1 /CLONE=UI-R-C2p-oi-g-06-0-UI /FEA=EST /CNT=8 /TID=Rn.23797.1 /TIER=Stack /STK=7 /UG=Rn.23797 /UG_TITLE=ESTs, Highly similar to ZAK4_HUMAN ZAKI-4 PROTEIN (H.sapiens) AI138048 regulator of calcineurin 2 Rcan2 140666 NM_175578 0019722 // calcium-mediated signaling // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation 1374236_at BI295858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295858 /DB_XREF=gi:14959725 /DB_XREF=UI-R-DK0-cfb-e-04-0-UI.s1 /CLONE=UI-R-DK0-cfb-e-04-0-UI /FEA=EST /CNT=7 /TID=Rn.26644.1 /TIER=Stack /STK=7 /UG=Rn.26644 /UG_TITLE=ESTs BI295858 1374237_at BI286025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286025 /DB_XREF=gi:14940262 /DB_XREF=UI-R-CX0s-ccu-f-03-0-UI.s1 /CLONE=UI-R-CX0s-ccu-f-03-0-UI /FEA=EST /CNT=7 /TID=Rn.66554.1 /TIER=Stack /STK=7 /UG=Rn.66554 /UG_TITLE=ESTs BI286025 leiomodin 1 (smooth muscle) Lmod1 304816 NM_001107179 0006936 // muscle contraction // not recorded 0005856 // cytoskeleton // inferred from electronic annotation 0005523 // tropomyosin binding // inferred from electronic annotation 1374238_at BI296639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296639 /DB_XREF=gi:14961263 /DB_XREF=UI-R-CV2-cgt-e-12-0-UI.s1 /CLONE=UI-R-CV2-cgt-e-12-0-UI /FEA=EST /CNT=7 /TID=Rn.66314.1 /TIER=Stack /STK=7 /UG=Rn.66314 /UG_TITLE=ESTs BI296639 1374239_at BI282835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282835 /DB_XREF=gi:14933994 /DB_XREF=UI-R-CW0s-ccc-a-01-0-UI.s1 /CLONE=UI-R-CW0s-ccc-a-01-0-UI /FEA=EST /CNT=7 /TID=Rn.29020.1 /TIER=Stack /STK=7 /UG=Rn.29020 /UG_TITLE=ESTs BI282835 FERM, RhoGEF and pleckstrin domain protein 2 Farp2 316639 NM_001108233 0016322 // neuron remodeling // not recorded /// 0016601 // Rac protein signal transduction // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0019898 // extrinsic to membrane // inferred from electronic annotation 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 1374240_at BF406127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406127 /DB_XREF=gi:11394102 /DB_XREF=UI-R-CA1-bjf-a-15-0-UI.s1 /CLONE=UI-R-CA1-bjf-a-15-0-UI /FEA=EST /CNT=7 /TID=Rn.52486.1 /TIER=Stack /STK=7 /UG=Rn.52486 /UG_TITLE=ESTs BF406127 1374241_at AI406271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406271 /DB_XREF=gi:4249775 /DB_XREF=EST234557 /CLONE=RBRDL82 /FEA=EST /CNT=7 /TID=Rn.23363.1 /TIER=Stack /STK=7 /UG=Rn.23363 /UG_TITLE=ESTs AI406271 1374242_at BI296522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296522 /DB_XREF=gi:14961029 /DB_XREF=UI-R-CV2-cgs-c-01-0-UI.s1 /CLONE=UI-R-CV2-cgs-c-01-0-UI /FEA=EST /CNT=7 /TID=Rn.66163.1 /TIER=Stack /STK=7 /UG=Rn.66163 /UG_TITLE=ESTs BI296522 1374243_at AI102744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102744 /DB_XREF=gi:3707439 /DB_XREF=EST212033 /CLONE=REMBR96 /FEA=EST /CNT=7 /TID=Rn.9180.1 /TIER=Stack /STK=7 /UG=Rn.9180 /UG_TITLE=ESTs AI102744 1374244_at AI411141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411141 /DB_XREF=gi:4254645 /DB_XREF=EST239435 /CLONE=RKIER87 /FEA=EST /CNT=7 /TID=Rn.43844.1 /TIER=Stack /STK=7 /UG=Rn.43844 /UG_TITLE=ESTs AI411141 1374245_at BI282085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282085 /DB_XREF=gi:14932480 /DB_XREF=UI-R-CU0s-cbw-d-05-0-UI.s1 /CLONE=UI-R-CU0s-cbw-d-05-0-UI /FEA=EST /CNT=7 /TID=Rn.35483.1 /TIER=Stack /STK=7 /UG=Rn.35483 /UG_TITLE=ESTs BI282085 nonhomologous end-joining factor 1 Nhej1 363251 NM_001014217 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006303 // double-strand break repair via nonhomologous end joining // not recorded /// 0006303 // double-strand break repair via nonhomologous end joining // inferred from sequence or structural similarity /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010212 // response to ionizing radiation // not recorded /// 0010212 // response to ionizing radiation // inferred from sequence or structural similarity /// 0030183 // B cell differentiation // not recorded /// 0030183 // B cell differentiation // inferred from sequence or structural similarity /// 0030217 // T cell differentiation // not recorded /// 0030217 // T cell differentiation // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0070419 // nonhomologous end joining complex // not recorded /// 0070419 // nonhomologous end joining complex // inferred from sequence or structural similarity 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1374246_at BF402392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402392 /DB_XREF=gi:11390367 /DB_XREF=UI-R-CA0-bhn-f-12-0-UI.s1 /CLONE=UI-R-CA0-bhn-f-12-0-UI /FEA=EST /CNT=7 /TID=Rn.34453.1 /TIER=Stack /STK=7 /UG=Rn.34453 /UG_TITLE=ESTs BF402392 1374247_at BI279869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279869 /DB_XREF=gi:14928098 /DB_XREF=UI-R-CU0s-cbr-h-06-0-UI.s1 /CLONE=UI-R-CU0s-cbr-h-06-0-UI /FEA=EST /CNT=7 /TID=Rn.2956.2 /TIER=Stack /STK=7 /UG=Rn.2956 /UG_TITLE=ESTs, Highly similar to Unknown (H.sapiens) BI279869 stabilin 1 LOC100363145 100363145 XM_002725156 /// XM_002725157 /// XM_002728378 /// XM_002728379 0007155 // cell adhesion // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // inferred from electronic annotation 1374248_at BM389619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389619 /DB_XREF=gi:18189672 /DB_XREF=UI-R-CN1-cjo-e-09-0-UI.s1 /CLONE=UI-R-CN1-cjo-e-09-0-UI /FEA=EST /CNT=7 /TID=Rn.9153.1 /TIER=Stack /STK=7 /UG=Rn.9153 /UG_TITLE=ESTs, Weakly similar to norvegicus myosin binding protein H (Rattus norvegicus) (R.norvegicus) BM389619 myosin binding protein C, slow type Mybpc1 362867 NM_001100758 /// XM_001076591 /// XM_343196 0006936 // muscle contraction // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation 0032982 // myosin filament // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0017022 // myosin binding // traceable author statement 1374249_at AI168962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI168962 /DB_XREF=gi:3705270 /DB_XREF=EST214790 /CLONE=RKIBL23 /FEA=EST /CNT=7 /TID=Rn.2550.1 /TIER=Stack /STK=7 /UG=Rn.2550 /UG_TITLE=ESTs AI168962 similar to Hypothetical protein MGC38513 RGD1304580 292781 NM_001009283 0045198 // establishment of epithelial cell apical/basal polarity // not recorded /// 0045198 // establishment of epithelial cell apical/basal polarity // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005640 // nuclear outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031309 // integral to nuclear outer membrane // not recorded /// 0031309 // integral to nuclear outer membrane // inferred from sequence or structural similarity 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374250_at BI291291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291291 /DB_XREF=gi:14950692 /DB_XREF=UI-R-CV2-cgn-h-04-0-UI.s1 /CLONE=UI-R-CV2-cgn-h-04-0-UI /FEA=EST /CNT=7 /TID=Rn.79816.1 /TIER=Stack /STK=7 /UG=Rn.79816 /UG_TITLE=ESTs BI291291 1374251_at AA893192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893192 /DB_XREF=gi:4132258 /DB_XREF=EST196995 /CLONE=RKIBD36 /FEA=EST /CNT=7 /TID=Rn.3568.1 /TIER=Stack /STK=7 /UG=Rn.3568 /UG_TITLE=ESTs AA893192 1374252_at BE108165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108165 /DB_XREF=gi:8500310 /DB_XREF=UI-R-BS1-ayw-f-04-0-UI.s1 /CLONE=UI-R-BS1-ayw-f-04-0-UI /FEA=EST /CNT=7 /TID=Rn.51434.1 /TIER=Stack /STK=7 /UG=Rn.51434 /UG_TITLE=ESTs BE108165 0005515 // protein binding // inferred from electronic annotation 1374253_at BI291355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291355 /DB_XREF=gi:14950808 /DB_XREF=UI-R-CV2-cgp-a-08-0-UI.s1 /CLONE=UI-R-CV2-cgp-a-08-0-UI /FEA=EST /CNT=7 /TID=Rn.16782.1 /TIER=Stack /STK=7 /UG=Rn.16782 /UG_TITLE=ESTs BI291355 similar to RIKEN cDNA 2310035C23 RGD1307235 309053 NM_001134546 0005488 // binding // inferred from electronic annotation 1374254_a_at BM386220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386220 /DB_XREF=gi:18186273 /DB_XREF=UI-R-CN1-cjf-e-04-0-UI.s1 /CLONE=UI-R-CN1-cjf-e-04-0-UI /FEA=EST /CNT=7 /TID=Rn.13486.1 /TIER=Stack /STK=7 /UG=Rn.13486 /UG_TITLE=ESTs BM386220 transmembrane protein 205 Tmem205 300441 NM_001106804 1374255_at BI281789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281789 /DB_XREF=gi:14931895 /DB_XREF=UI-R-CU0s-cbs-e-11-0-UI.s1 /CLONE=UI-R-CU0s-cbs-e-11-0-UI /FEA=EST /CNT=7 /TID=Rn.2972.1 /TIER=Stack /STK=7 /UG=Rn.2972 /UG_TITLE=ESTs, Highly similar to T45074 probable phenylalanine--tRNA ligase (H.sapiens) BI281789 phenylalanyl-tRNA synthetase, alpha subunit Farsa 288917 NM_001024237 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006432 // phenylalanyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0000049 // tRNA binding // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004826 // phenylalanine-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1374256_at BM384248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384248 /DB_XREF=gi:18184301 /DB_XREF=UI-R-DZ0-cks-g-07-0-UI.s1 /CLONE=UI-R-DZ0-cks-g-07-0-UI /FEA=EST /CNT=7 /TID=Rn.29255.1 /TIER=Stack /STK=7 /UG=Rn.29255 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BM384248 WW domain containing E3 ubiquitin protein ligase 2 Wwp2 291999 NM_001106184 0006464 // protein modification process // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0032410 // negative regulation of transporter activity // inferred from electronic annotation /// 0032410 // negative regulation of transporter activity // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051224 // negative regulation of protein transport // inferred from electronic annotation /// 0051224 // negative regulation of protein transport // not recorded /// 0070534 // protein K63-linked ubiquitination // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1374257_at BM389265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389265 /DB_XREF=gi:18189318 /DB_XREF=UI-R-DZ0-cko-b-04-0-UI.s1 /CLONE=UI-R-DZ0-cko-b-04-0-UI /FEA=EST /CNT=7 /TID=Rn.46546.1 /TIER=Stack /STK=7 /UG=Rn.46546 /UG_TITLE=ESTs, Highly similar to TIAM MOUSE T-LYMPHOMA INVASION AND METASTASIS INDUCING PROTEIN 1 (M.musculus) BM389265 T-cell lymphoma invasion and metastasis 1 Tiam1 304109 NM_001100558 0006915 // apoptosis // not recorded /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0048013 // ephrin receptor signaling pathway // not recorded /// 0050772 // positive regulation of axonogenesis // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005543 // phospholipid binding // not recorded /// 0046875 // ephrin receptor binding // not recorded 1374258_at BF394021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394021 /DB_XREF=gi:11378885 /DB_XREF=UI-R-CA0-bgy-a-01-0-UI.s1 /CLONE=UI-R-CA0-bgy-a-01-0-UI /FEA=EST /CNT=7 /TID=Rn.58200.1 /TIER=Stack /STK=7 /UG=Rn.58200 /UG_TITLE=ESTs BF394021 similar to hypothetical protein MGC13138 RGD1306928 293509 XM_001080215 /// XM_002725669 /// XM_002725670 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1374259_at BG378156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378156 /DB_XREF=gi:13302628 /DB_XREF=UI-R-CV1-bvo-f-05-0-UI.s1 /CLONE=UI-R-CV1-bvo-f-05-0-UI /FEA=EST /CNT=7 /TID=Rn.66545.1 /TIER=Stack /STK=7 /UG=Rn.66545 /UG_TITLE=ESTs BG378156 1374260_at AW532932 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532932 /DB_XREF=gi:7175346 /DB_XREF=UI-R-BU0-ang-h-03-0-UI.s1 /CLONE=UI-R-BU0-ang-h-03-0-UI /FEA=EST /CNT=7 /TID=Rn.42127.1 /TIER=Stack /STK=7 /UG=Rn.42127 /UG_TITLE=ESTs AW532932 1374261_at BF403349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403349 /DB_XREF=gi:11391324 /DB_XREF=UI-R-CA1-biy-i-18-0-UI.s1 /CLONE=UI-R-CA1-biy-i-18-0-UI /FEA=EST /CNT=7 /TID=Rn.57606.1 /TIER=Stack /STK=7 /UG=Rn.57606 /UG_TITLE=ESTs BF403349 1374262_at BF396371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396371 /DB_XREF=gi:11381343 /DB_XREF=UI-R-BS2-bdx-d-03-0-UI.s1 /CLONE=UI-R-BS2-bdx-d-03-0-UI /FEA=EST /CNT=7 /TID=Rn.32615.1 /TIER=Stack /STK=7 /UG=Rn.32615 /UG_TITLE=ESTs BF396371 1374263_at BF396108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396108 /DB_XREF=gi:11381080 /DB_XREF=UI-R-CA1-bcb-d-09-0-UI.s1 /CLONE=UI-R-CA1-bcb-d-09-0-UI /FEA=EST /CNT=7 /TID=Rn.62922.1 /TIER=Stack /STK=7 /UG=Rn.62922 /UG_TITLE=ESTs BF396108 1374264_at BM384751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384751 /DB_XREF=gi:18184804 /DB_XREF=UI-R-CN1-cjl-n-05-0-UI.s2 /CLONE=UI-R-CN1-cjl-n-05-0-UI /FEA=EST /CNT=7 /TID=Rn.16901.1 /TIER=Stack /STK=7 /UG=Rn.16901 /UG_TITLE=ESTs BM384751 origin recognition complex, subunit 5-like (yeast) Orc5l 362304 NM_001014186 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded 0000808 // origin recognition complex // inferred from electronic annotation /// 0000808 // origin recognition complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1374265_at BF395101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395101 /DB_XREF=gi:11380109 /DB_XREF=UI-R-CM0-bjj-d-03-0-UI.s1 /CLONE=UI-R-CM0-bjj-d-03-0-UI /FEA=EST /CNT=7 /TID=Rn.19765.1 /TIER=Stack /STK=7 /UG=Rn.19765 /UG_TITLE=ESTs BF395101 1374266_at AA955773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955773 /DB_XREF=gi:4238168 /DB_XREF=UI-R-E1-fg-a-03-0-UI.s1 /CLONE=UI-R-E1-fg-a-03-0-UI /FEA=EST /CNT=7 /TID=Rn.8926.1 /TIER=Stack /STK=7 /UG=Rn.8926 /UG_TITLE=ESTs, Weakly similar to T00043 BH-protocadherin-a - mouse (M.musculus) AA955773 Protocadherin 1 Pcdh1 307481 XM_001066229 /// XM_225997 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374267_at BG378154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378154 /DB_XREF=gi:13302626 /DB_XREF=UI-R-CV1-bvo-f-03-0-UI.s1 /CLONE=UI-R-CV1-bvo-f-03-0-UI /FEA=EST /CNT=7 /TID=Rn.62909.1 /TIER=Stack /STK=7 /UG=Rn.62909 /UG_TITLE=ESTs BG378154 1374268_at AA859010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859010 /DB_XREF=gi:2948361 /DB_XREF=UI-R-A0-bi-d-10-0-UI.s1 /CLONE=UI-R-A0-bi-d-10-0-UI /FEA=EST /CNT=7 /TID=Rn.17466.1 /TIER=Stack /STK=7 /UG=Rn.17466 /UG_TITLE=ESTs AA859010 1374269_at BF398756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398756 /DB_XREF=gi:11383720 /DB_XREF=UI-R-BS2-bes-b-02-0-UI.s1 /CLONE=UI-R-BS2-bes-b-02-0-UI /FEA=EST /CNT=7 /TID=Rn.6402.1 /TIER=Stack /STK=7 /UG=Rn.6402 /UG_TITLE=ESTs BF398756 1374270_at AA964789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964789 /DB_XREF=gi:4279663 /DB_XREF=UI-R-E1-gq-g-08-0-UI.s1 /CLONE=UI-R-E1-gq-g-08-0-UI /FEA=EST /CNT=7 /TID=Rn.11914.1 /TIER=Stack /STK=7 /UG=Rn.11914 /UG_TITLE=ESTs AA964789 1374271_at AW528864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528864 /DB_XREF=gi:7171278 /DB_XREF=UI-R-BT1-akj-e-03-0-UI.s1 /CLONE=UI-R-BT1-akj-e-03-0-UI /FEA=EST /CNT=7 /TID=Rn.27616.1 /TIER=Stack /STK=7 /UG=Rn.27616 /UG_TITLE=ESTs AW528864 1374272_at BI280268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280268 /DB_XREF=gi:14928881 /DB_XREF=UI-R-DE0-cag-a-01-0-UI.s1 /CLONE=UI-R-DE0-cag-a-01-0-UI /FEA=EST /CNT=7 /TID=Rn.16280.1 /TIER=Stack /STK=7 /UG=Rn.16280 /UG_TITLE=ESTs BI280268 similar to DNA segment, Chr 5, ERATO Doi 135, expressed LOC679383 679383 NM_001128287 0003824 // catalytic activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1374273_at BG665433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665433 /DB_XREF=gi:13887355 /DB_XREF=DRACCG09 /CLONE=DRACCG09 /FEA=EST /CNT=7 /TID=Rn.45690.1 /TIER=Stack /STK=7 /UG=Rn.45690 /UG_TITLE=ESTs BG665433 1374274_at AW434998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434998 /DB_XREF=gi:6966305 /DB_XREF=UI-R-BJ0p-afv-d-12-0-UI.s1 /CLONE=UI-R-BJ0p-afv-d-12-0-UI /FEA=EST /CNT=7 /TID=Rn.50697.1 /TIER=Stack /STK=7 /UG=Rn.50697 /UG_TITLE=ESTs AW434998 1374275_at AW252112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252112 /DB_XREF=gi:6595703 /DB_XREF=UI-R-BJ0-aee-d-01-0-UI.s1 /CLONE=UI-R-BJ0-aee-d-01-0-UI /FEA=EST /CNT=7 /TID=Rn.44281.1 /TIER=Stack /STK=7 /UG=Rn.44281 /UG_TITLE=ESTs, Weakly similar to CAH5 RAT CARBONIC ANHYDRASE VA, MITOCHONDRIAL PRECURSOR (R.norvegicus) AW252112 carbonic anhydrase 11 Car11 308588 NM_175708 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded 1374276_at BE104102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104102 /DB_XREF=gi:8496202 /DB_XREF=UI-R-BX0-ark-g-05-0-UI.s1 /CLONE=UI-R-BX0-ark-g-05-0-UI /FEA=EST /CNT=7 /TID=Rn.26660.1 /TIER=Stack /STK=7 /UG=Rn.26660 /UG_TITLE=ESTs BE104102 1374277_at BI289615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289615 /DB_XREF=gi:14947370 /DB_XREF=UI-R-DK0-cfi-a-12-0-UI.s1 /CLONE=UI-R-DK0-cfi-a-12-0-UI /FEA=EST /CNT=7 /TID=Rn.34762.1 /TIER=Stack /STK=7 /UG=Rn.34762 /UG_TITLE=ESTs BI289615 cyclin J-like Ccnjl 303059 NM_001037773 0005634 // nucleus // inferred from electronic annotation 1374278_at BG381647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381647 /DB_XREF=gi:13306119 /DB_XREF=UI-R-CT0-bud-g-05-0-UI.s1 /CLONE=UI-R-CT0-bud-g-05-0-UI /FEA=EST /CNT=7 /TID=Rn.26832.1 /TIER=Stack /STK=7 /UG=Rn.26832 /UG_TITLE=ESTs BG381647 fat storage-inducing transmembrane protein 2 Fitm2 311617 NM_001107799 0010866 // regulation of triglyceride biosynthetic process // not recorded /// 0010890 // positive regulation of sequestering of triglyceride // not recorded /// 0034389 // lipid particle organization // not recorded /// 0035356 // cellular triglyceride homeostasis // not recorded 0005739 // mitochondrion // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded 1374279_at BI288244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288244 /DB_XREF=gi:14944640 /DB_XREF=UI-R-DK0-ccy-e-11-0-UI.s1 /CLONE=UI-R-DK0-ccy-e-11-0-UI /FEA=EST /CNT=7 /TID=Rn.3192.1 /TIER=Stack /STK=7 /UG=Rn.3192 /UG_TITLE=ESTs, Highly similar to A55053 endothelial monocyte-activating protein II precursor - mouse (M.musculus) BI288244 aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 Aimp1 114632 NM_053757 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0006954 // inflammatory response // traceable author statement /// 0007267 // cell-cell signaling // not recorded /// 0016525 // negative regulation of angiogenesis // traceable author statement /// 0048514 // blood vessel morphogenesis // inferred from expression pattern /// 0050900 // leukocyte migration // not recorded /// 0051607 // defense response to virus // inferred from expression pattern 0005829 // cytosol // not recorded /// 0017101 // aminoacyl-tRNA synthetase multienzyme complex // not recorded 0000049 // tRNA binding // not recorded /// 0000049 // tRNA binding // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005125 // cytokine activity // traceable author statement /// 0042803 // protein homodimerization activity // not recorded /// 0043498 // cell surface binding // not recorded 1374280_at AA817812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817812 /DB_XREF=gi:4198338 /DB_XREF=UI-R-A0-ae-c-07-0-UI.s1 /CLONE=UI-R-A0-ae-c-07-0-UI /FEA=EST /CNT=7 /TID=Rn.16398.1 /TIER=Stack /STK=7 /UG=Rn.16398 /UG_TITLE=ESTs AA817812 cerebellin 2 precursor Cbln2 291388 NM_001012740 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1374281_at BE109901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109901 /DB_XREF=gi:8502006 /DB_XREF=UI-R-CA0-axi-f-11-0-UI.s1 /CLONE=UI-R-CA0-axi-f-11-0-UI /FEA=EST /CNT=7 /TID=Rn.19822.1 /TIER=Stack /STK=7 /UG=Rn.19822 /UG_TITLE=ESTs BE109901 INO80 homolog (S. cerevisiae) Ino80 296084 XM_001080838 /// XM_230473 0006338 // chromatin remodeling // not recorded 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003678 // DNA helicase activity // not recorded /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded 1374282_at BF404878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404878 /DB_XREF=gi:11392853 /DB_XREF=UI-R-CA1-bic-g-03-0-UI.s1 /CLONE=UI-R-CA1-bic-g-03-0-UI /FEA=EST /CNT=7 /TID=Rn.61361.1 /TIER=Stack /STK=7 /UG=Rn.61361 /UG_TITLE=ESTs BF404878 1374283_at BF419505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419505 /DB_XREF=gi:11407494 /DB_XREF=UI-R-CA0-bns-f-06-0-UI.s1 /CLONE=UI-R-CA0-bns-f-06-0-UI /FEA=EST /CNT=7 /TID=Rn.49972.1 /TIER=Stack /STK=7 /UG=Rn.49972 /UG_TITLE=ESTs, Weakly similar to TF1B MOUSE TRANSCRIPTION INTERMEDIARY FACTOR 1-BETA (M.musculus) BF419505 fetal Alzheimer antigen Falz 303617 NM_001127535 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374284_at AI227769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227769 /DB_XREF=gi:3811656 /DB_XREF=EST224464 /CLONE=RBRCL23 /FEA=EST /CNT=7 /TID=Rn.11482.1 /TIER=Stack /STK=7 /UG=Rn.11482 /UG_TITLE=ESTs AI227769 Ras association (RalGDS/AF-6) domain family member 4 Rassf4 362423 NM_001024275 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1374285_at AW531275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531275 /DB_XREF=gi:7173689 /DB_XREF=UI-R-BS0-aml-h-01-0-UI.s1 /CLONE=UI-R-BS0-aml-h-01-0-UI /FEA=EST /CNT=7 /TID=Rn.13720.1 /TIER=Stack /STK=7 /UG=Rn.13720 /UG_TITLE=ESTs AW531275 1374286_at AA996836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996836 /DB_XREF=gi:4280600 /DB_XREF=UI-R-C0-hg-e-02-0-UI.s1 /CLONE=UI-R-C0-hg-e-02-0-UI /FEA=EST /CNT=7 /TID=Rn.8901.1 /TIER=Stack /STK=7 /UG=Rn.8901 /UG_TITLE=ESTs AA996836 1374287_at AI170297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170297 /DB_XREF=gi:3710337 /DB_XREF=EST216223 /CLONE=RLUCG63 /FEA=EST /CNT=7 /TID=Rn.28399.1 /TIER=Stack /STK=7 /UG=Rn.28399 /UG_TITLE=ESTs AI170297 paladin Pald 294508 NM_001034128 1374288_at BG374267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374267 /DB_XREF=gi:13298739 /DB_XREF=UI-R-CV1-bsn-d-01-0-UI.s1 /CLONE=UI-R-CV1-bsn-d-01-0-UI /FEA=EST /CNT=7 /TID=Rn.47509.1 /TIER=Stack /STK=7 /UG=Rn.47509 /UG_TITLE=ESTs BG374267 FtsJ homolog 3 (E. coli) Ftsj3 303608 NM_001012014 0006364 // rRNA processing // inferred from electronic annotation /// 0031167 // rRNA methylation // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1374289_at AA818183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818183 /DB_XREF=gi:4198696 /DB_XREF=UI-R-A0-ai-f-05-0-UI.s1 /CLONE=UI-R-A0-ai-f-05-0-UI /FEA=EST /CNT=7 /TID=Rn.1320.1 /TIER=Stack /STK=7 /UG=Rn.1320 /UG_TITLE=ESTs, Highly similar to DNA-DIRECTED RNA POLYMERASE I 40 KD POLYPEPTIDE (M.musculus) AA818183 polymerase (RNA) I polypeptide C Polr1c 301246 NM_001008330 0006350 // transcription // inferred from electronic annotation 0005654 // nucleoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1374290_at AI408191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408191 /DB_XREF=gi:4251695 /DB_XREF=EST236481 /CLONE=ROVEJ12 /FEA=EST /CNT=7 /TID=Rn.14810.1 /TIER=Stack /STK=7 /UG=Rn.14810 /UG_TITLE=ESTs AI408191 1374291_at BI291937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291937 /DB_XREF=gi:14951947 /DB_XREF=UI-R-DN0-civ-b-09-0-UI.s1 /CLONE=UI-R-DN0-civ-b-09-0-UI /FEA=EST /CNT=7 /TID=Rn.41217.1 /TIER=Stack /STK=7 /UG=Rn.41217 /UG_TITLE=ESTs BI291937 DnaJ (Hsp40) homolog, subfamily C, member 17 Dnajc17 311329 NM_001191740 /// XM_001080801 /// XM_230468 0006457 // protein folding // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1374292_at BF414124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414124 /DB_XREF=gi:11402113 /DB_XREF=UI-R-BJ2-bom-f-05-0-UI.s1 /CLONE=UI-R-BJ2-bom-f-05-0-UI /FEA=EST /CNT=7 /TID=Rn.21760.1 /TIER=Stack /STK=7 /UG=Rn.21760 /UG_TITLE=ESTs BF414124 similar to RIKEN cDNA 1110031I02 RGD1305007 303749 NM_001013976 0055114 // oxidation reduction // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374293_at AI137495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137495 /DB_XREF=gi:3638272 /DB_XREF=UI-R-C2p-ol-h-12-0-UI.s1 /CLONE=UI-R-C2p-ol-h-12-0-UI /FEA=EST /CNT=7 /TID=Rn.40496.1 /TIER=Stack /STK=7 /UG=Rn.40496 /UG_TITLE=ESTs, Highly similar to H2A1 RAT HISTONE H2A.1 (R.norvegicus) AI137495 H2A histone family, member J H2afj 690795 NM_001109610 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1374294_at AW534851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534851 /DB_XREF=gi:7177265 /DB_XREF=UI-R-BS0-anx-b-06-0-UI.s1 /CLONE=UI-R-BS0-anx-b-06-0-UI /FEA=EST /CNT=7 /TID=Rn.40895.1 /TIER=Stack /STK=7 /UG=Rn.40895 /UG_TITLE=ESTs AW534851 hypothetical protein LOC687796 LOC687796 687796 XM_001078497 /// XM_002728812 0009607 // response to biotic stimulus // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 1374295_at AI233096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233096 /DB_XREF=gi:3816976 /DB_XREF=EST229784 /CLONE=RKICK74 /FEA=EST /CNT=7 /TID=Rn.24623.1 /TIER=Stack /STK=7 /UG=Rn.24623 /UG_TITLE=ESTs, Moderately similar to RPOM_HUMAN DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL PRECURSOR (H.sapiens) AI233096 polymerase (RNA) mitochondrial (DNA directed) Polrmt 299604 NM_001106766 0006350 // transcription // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0042645 // mitochondrial nucleoid // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1374296_at BM387574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387574 /DB_XREF=gi:18187627 /DB_XREF=UI-R-CN1-cjl-m-20-0-UI.s1 /CLONE=UI-R-CN1-cjl-m-20-0-UI /FEA=EST /CNT=7 /TID=Rn.33512.1 /TIER=Stack /STK=7 /UG=Rn.33512 /UG_TITLE=ESTs BM387574 1374297_at BE100843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100843 /DB_XREF=gi:8492743 /DB_XREF=UI-R-BJ1-auf-h-11-0-UI.s1 /CLONE=UI-R-BJ1-auf-h-11-0-UI /FEA=EST /CNT=7 /TID=Rn.2064.2 /TIER=Stack /STK=7 /UG=Rn.2064 /UG_TITLE=Rattus norvegicus dynein light intermediate chain 1 mRNA, complete cds BE100843 Dynein cytoplasmic 1 light intermediate chain 1 Dync1li1 252902 NM_145772 0006810 // transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007052 // mitotic spindle organization // traceable author statement /// 0046605 // regulation of centrosome cycle // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation /// 0090267 // positive regulation of mitotic cell cycle spindle assembly checkpoint // not recorded /// 0090267 // positive regulation of mitotic cell cycle spindle assembly checkpoint // inferred from sequence or structural similarity /// 0090267 // positive regulation of mitotic cell cycle spindle assembly checkpoint // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // not recorded /// 0000776 // kinetochore // inferred from sequence or structural similarity /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0000922 // spindle pole // not recorded /// 0000922 // spindle pole // inferred from sequence or structural similarity /// 0000922 // spindle pole // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005868 // cytoplasmic dynein complex // not recorded /// 0005868 // cytoplasmic dynein complex // inferred from sequence or structural similarity /// 0005868 // cytoplasmic dynein complex // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0030286 // dynein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from electronic annotation 1374298_at BG373455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373455 /DB_XREF=gi:13269957 /DB_XREF=UI-R-CV1-bry-e-11-0-UI.s1 /CLONE=UI-R-CV1-bry-e-11-0-UI /FEA=EST /CNT=7 /TID=Rn.66477.1 /TIER=Stack /STK=7 /UG=Rn.66477 /UG_TITLE=ESTs BG373455 1374299_at BF398414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398414 /DB_XREF=gi:11383403 /DB_XREF=UI-R-BS2-beo-f-01-0-UI.s1 /CLONE=UI-R-BS2-beo-f-01-0-UI /FEA=EST /CNT=7 /TID=Rn.41553.1 /TIER=Stack /STK=7 /UG=Rn.41553 /UG_TITLE=ESTs, Highly similar to DDX9 MOUSE ATP-DEPENDENT RNA HELICASE A (M.musculus) BF398414 DEAH (Asp-Glu-Ala-His) box polypeptide 9 Dhx9 304859 NM_001107184 0008380 // RNA splicing // not recorded /// 0034605 // cellular response to heat // not recorded /// 0070934 // CRD-mediated mRNA stabilization // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005813 // centrosome // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0070937 // CRD-mediated mRNA stability complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1374300_at AA997139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997139 /DB_XREF=gi:4281801 /DB_XREF=UI-R-C0-hq-c-03-0-UI.s1 /CLONE=UI-R-C0-hq-c-03-0-UI /FEA=EST /CNT=7 /TID=Rn.12624.1 /TIER=Stack /STK=7 /UG=Rn.12624 /UG_TITLE=ESTs, Weakly similar to T16696 hypothetical protein R07E4.4 - Caenorhabditis elegans (C.elegans) AA997139 ectonucleoside triphosphate diphosphohydrolase 4 Entpd4 361063 NM_001108384 0006256 // UDP catabolic process // not recorded 0030173 // integral to Golgi membrane // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0016787 // hydrolase activity // inferred from electronic annotation /// 0045134 // uridine-diphosphatase activity // not recorded 1374301_at BI294695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294695 /DB_XREF=gi:14957400 /DB_XREF=UI-R-DK0-ceb-a-04-0-UI.s1 /CLONE=UI-R-DK0-ceb-a-04-0-UI /FEA=EST /CNT=7 /TID=Rn.17805.1 /TIER=Stack /STK=7 /UG=Rn.17805 /UG_TITLE=ESTs, Moderately similar to T50629 hypothetical protein DKFZp762L1710.1 (H.sapiens) BI294695 component of oligomeric golgi complex 1 Cog1 303652 NM_001107062 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0017119 // Golgi transport complex // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1374302_at AW434432 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434432 /DB_XREF=gi:6965739 /DB_XREF=UI-R-BJ0p-afr-a-12-0-UI.s1 /CLONE=UI-R-BJ0p-afr-a-12-0-UI /FEA=EST /CNT=7 /TID=Rn.54303.1 /TIER=Stack /STK=7 /UG=Rn.54303 /UG_TITLE=ESTs, Weakly similar to OPSD RAT RHODOPSIN (R.norvegicus) AW434432 opsin 4 Opn4 192223 NM_138860 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007601 // visual perception // inferred from electronic annotation /// 0007602 // phototransduction // inferred from direct assay /// 0007602 // phototransduction // not recorded /// 0007602 // phototransduction // inferred from electronic annotation /// 0009584 // detection of visible light // not recorded /// 0018298 // protein-chromophore linkage // inferred from electronic annotation /// 0042752 // regulation of circadian rhythm // not recorded /// 0042752 // regulation of circadian rhythm // inferred from sequence or structural similarity /// 0042752 // regulation of circadian rhythm // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005502 // 11-cis retinal binding // not recorded /// 0005502 // 11-cis retinal binding // inferred from sequence or structural similarity /// 0008020 // G-protein coupled photoreceptor activity // inferred from direct assay /// 0008020 // G-protein coupled photoreceptor activity // not recorded /// 0009881 // photoreceptor activity // inferred from electronic annotation 1374303_at BI288146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288146 /DB_XREF=gi:14944443 /DB_XREF=UI-R-DK0-cdc-e-01-0-UI.s1 /CLONE=UI-R-DK0-cdc-e-01-0-UI /FEA=EST /CNT=7 /TID=Rn.14599.1 /TIER=Stack /STK=7 /UG=Rn.14599 /UG_TITLE=ESTs BI288146 alkB, alkylation repair homolog 2 (E. coli) Alkbh2 304578 NM_001126273 0006307 // DNA dealkylation involved in DNA repair // not recorded /// 0008152 // metabolic process // not recorded /// 0035511 // oxidative DNA demethylation // inferred from electronic annotation /// 0035511 // oxidative DNA demethylation // not recorded /// 0080111 // DNA demethylation // not recorded 0005654 // nucleoplasm // not recorded 0003684 // damaged DNA binding // not recorded /// 0004519 // endonuclease activity // not recorded /// 0004527 // exonuclease activity // not recorded /// 0008198 // ferrous iron binding // inferred from electronic annotation /// 0008198 // ferrous iron binding // not recorded /// 0010302 // 2-oxoglutarate-dependent dioxygenase activity // inferred from electronic annotation /// 0010302 // 2-oxoglutarate-dependent dioxygenase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0043734 // DNA-N1-methyladenine dioxygenase activity // inferred from electronic annotation /// 0043734 // DNA-N1-methyladenine dioxygenase activity // not recorded /// 0051747 // cytosine C-5 DNA demethylase activity // inferred from electronic annotation /// 0051747 // cytosine C-5 DNA demethylase activity // not recorded 1374304_at AW526081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526081 /DB_XREF=gi:7168466 /DB_XREF=UI-R-BO1-aiz-a-05-0-UI.s1 /CLONE=UI-R-BO1-aiz-a-05-0-UI /FEA=EST /CNT=7 /TID=Rn.40979.1 /TIER=Stack /STK=7 /UG=Rn.40979 /UG_TITLE=ESTs, Moderately similar to 2205251A XRCC4 gene (H.sapiens) AW526081 X-ray repair complementing defective repair in Chinese hamster cells 4 Xrcc4 309995 NM_001006999 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0002328 // pro-B cell differentiation // inferred from electronic annotation /// 0002328 // pro-B cell differentiation // not recorded /// 0006266 // DNA ligation // not recorded /// 0006266 // DNA ligation // inferred from electronic annotation /// 0006302 // double-strand break repair // not recorded /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006303 // double-strand break repair via nonhomologous end joining // inferred from electronic annotation /// 0006303 // double-strand break repair via nonhomologous end joining // not recorded /// 0006310 // DNA recombination // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0010165 // response to X-ray // inferred from electronic annotation /// 0010165 // response to X-ray // not recorded /// 0010212 // response to ionizing radiation // not recorded /// 0010212 // response to ionizing radiation // inferred from electronic annotation /// 0010332 // response to gamma radiation // inferred from electronic annotation /// 0010332 // response to gamma radiation // not recorded /// 0019047 // provirus integration // not recorded /// 0019059 // initiation of viral infection // not recorded /// 0033077 // T cell differentiation in thymus // inferred from electronic annotation /// 0033077 // T cell differentiation in thymus // not recorded /// 0033151 // V(D)J recombination // not recorded /// 0033151 // V(D)J recombination // inferred from electronic annotation /// 0033152 // immunoglobulin V(D)J recombination // inferred from electronic annotation /// 0033152 // immunoglobulin V(D)J recombination // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045190 // isotype switching // inferred from electronic annotation /// 0045190 // isotype switching // not recorded /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0050769 // positive regulation of neurogenesis // inferred from electronic annotation /// 0050769 // positive regulation of neurogenesis // not recorded /// 0051103 // DNA ligation involved in DNA repair // inferred from electronic annotation /// 0051103 // DNA ligation involved in DNA repair // not recorded /// 0051351 // positive regulation of ligase activity // inferred from electronic annotation /// 0051351 // positive regulation of ligase activity // not recorded /// 0071285 // cellular response to lithium ion // inferred from expression pattern 0000793 // condensed chromosome // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005958 // DNA-dependent protein kinase-DNA ligase 4 complex // inferred from electronic annotation /// 0005958 // DNA-dependent protein kinase-DNA ligase 4 complex // not recorded /// 0032807 // DNA ligase IV complex // inferred from electronic annotation /// 0032807 // DNA ligase IV complex // not recorded /// 0070419 // nonhomologous end joining complex // not recorded /// 0070419 // nonhomologous end joining complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0016874 // ligase activity // not recorded 1374305_at AI408613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408613 /DB_XREF=gi:4252117 /DB_XREF=EST236903 /CLONE=ROVEJ76 /FEA=EST /CNT=7 /TID=Rn.4261.1 /TIER=Stack /STK=7 /UG=Rn.4261 /UG_TITLE=ESTs, Highly similar to A1G2_MOUSE ADAPTER-RELATED PROTEIN COMPLEX 1 GAMMA 2 SUBUNIT (GAMMA2-ADAPTIN) (G2AD) (M.musculus) AI408613 adaptor-related protein complex 1, gamma 2 subunit-like LOC100365152 100365152 XM_002725104 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0044431 // Golgi apparatus part // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 1374306_at BF394933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394933 /DB_XREF=gi:11379893 /DB_XREF=UI-R-CA0-bgf-f-01-0-UI.s1 /CLONE=UI-R-CA0-bgf-f-01-0-UI /FEA=EST /CNT=7 /TID=Rn.25422.1 /TIER=Stack /STK=7 /UG=Rn.25422 /UG_TITLE=ESTs BF394933 zinc finger, DHHC-type containing 18 Zdhhc18 362613 NM_001039339 0008152 // metabolic process // not recorded /// 0034613 // cellular protein localization // inferred from electronic annotation /// 0034613 // cellular protein localization // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016409 // palmitoyltransferase activity // inferred from electronic annotation /// 0016409 // palmitoyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374307_at AI236027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236027 /DB_XREF=gi:4136151 /DB_XREF=EST232589 /CLONE=ROVDA41 /FEA=EST /CNT=7 /TID=Rn.12600.1 /TIER=Stack /STK=7 /UG=Rn.12600 /UG_TITLE=ESTs AI236027 1374308_at AI575603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575603 /DB_XREF=gi:4559979 /DB_XREF=UI-R-Y0-vi-a-05-0-UI.s1 /CLONE=UI-R-Y0-vi-a-05-0-UI /FEA=EST /CNT=7 /TID=Rn.12877.1 /TIER=Stack /STK=7 /UG=Rn.12877 /UG_TITLE=ESTs AI575603 SEC14-like 2 (S. cerevisiae) Sec14l2 116486 NM_053801 0006350 // transcription // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045542 // positive regulation of cholesterol biosynthetic process // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0008047 // enzyme activator activity // inferred from direct assay /// 0008289 // lipid binding // inferred from electronic annotation /// 0016765 // transferase activity, transferring alkyl or aryl (other than methyl) groups // inferred from direct assay 1374309_at BF406637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406637 /DB_XREF=gi:11394612 /DB_XREF=UI-R-BJ2-bpv-d-07-0-UI.s1 /CLONE=UI-R-BJ2-bpv-d-07-0-UI /FEA=EST /CNT=7 /TID=Rn.7586.1 /TIER=Stack /STK=7 /UG=Rn.7586 /UG_TITLE=ESTs BF406637 Ras association and DIL domains Radil 304299 NM_001037218 0007165 // signal transduction // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374310_at AW254261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254261 /DB_XREF=gi:6597852 /DB_XREF=UI-R-BJ0-aev-e-11-0-UI.s1 /CLONE=UI-R-BJ0-aev-e-11-0-UI /FEA=EST /CNT=7 /TID=Rn.12833.1 /TIER=Stack /STK=7 /UG=Rn.12833 /UG_TITLE=ESTs, Highly similar to T43442 hypothetical protein DKFZp434P1514.1 (H.sapiens) AW254261 protein phosphatase 1J Ppm1j 295341 NM_001005540 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1374311_at BG373273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373273 /DB_XREF=gi:13269810 /DB_XREF=UI-R-CV1-brw-g-09-0-UI.s1 /CLONE=UI-R-CV1-brw-g-09-0-UI /FEA=EST /CNT=7 /TID=Rn.40598.1 /TIER=Stack /STK=7 /UG=Rn.40598 /UG_TITLE=ESTs BG373273 ring finger protein 207 Rnf207 691246 XM_001075996 /// XM_002726663 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374312_at BI297050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297050 /DB_XREF=gi:14962078 /DB_XREF=UI-R-DK0-cgk-f-08-0-UI.s1 /CLONE=UI-R-DK0-cgk-f-08-0-UI /FEA=EST /CNT=7 /TID=Rn.13014.1 /TIER=Stack /STK=7 /UG=Rn.13014 /UG_TITLE=ESTs BI297050 uridine-cytidine kinase 1 Uck1 311864 NM_001107831 0008152 // metabolic process // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004849 // uridine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1374313_at BI294383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294383 /DB_XREF=gi:14956789 /DB_XREF=UI-R-DK0-cei-b-09-0-UI.s1 /CLONE=UI-R-DK0-cei-b-09-0-UI /FEA=EST /CNT=7 /TID=Rn.38446.1 /TIER=Stack /STK=7 /UG=Rn.38446 /UG_TITLE=ESTs, Weakly similar to A56577 microtubule-associated protein MAP 1B - rat (R.norvegicus) BI294383 microtubule-associated protein 1S Map1s 290640 NM_001106070 0000226 // microtubule cytoskeleton organization // not recorded /// 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0001578 // microtubule bundle formation // inferred from electronic annotation /// 0001578 // microtubule bundle formation // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0048812 // neuron projection morphogenesis // inferred from electronic annotation /// 0048812 // neuron projection morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005874 // microtubule // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0042995 // cell projection // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0004536 // deoxyribonuclease activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0015631 // tubulin binding // not recorded /// 0015631 // tubulin binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // not recorded /// 0051015 // actin filament binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1374314_at BF394728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394728 /DB_XREF=gi:11379686 /DB_XREF=UI-R-CA0-bge-c-01-0-UI.s1 /CLONE=UI-R-CA0-bge-c-01-0-UI /FEA=EST /CNT=7 /TID=Rn.63086.1 /TIER=Stack /STK=7 /UG=Rn.63086 /UG_TITLE=ESTs BF394728 1374315_at AI228079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228079 /DB_XREF=gi:4135310 /DB_XREF=EST224774 /CLONE=RBRCP93 /FEA=EST /CNT=7 /TID=Rn.20014.1 /TIER=Stack /STK=7 /UG=Rn.20014 /UG_TITLE=ESTs AI228079 1374316_at AI229612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229612 /DB_XREF=gi:4135452 /DB_XREF=EST226307 /CLONE=REMCJ32 /FEA=EST /CNT=7 /TID=Rn.24457.1 /TIER=Stack /STK=7 /UG=Rn.24457 /UG_TITLE=ESTs, Highly similar to T12455 hypothetical protein DKFZp564H2023.1 (H.sapiens) AI229612 similar to arsenate resistance protein 2 LOC686980 686980 XM_001076594 1374317_at BM383924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383924 /DB_XREF=gi:18183977 /DB_XREF=UI-R-DM1-ckc-c-09-0-UI.s1 /CLONE=UI-R-DM1-ckc-c-09-0-UI /FEA=EST /CNT=7 /TID=Rn.58070.1 /TIER=Stack /STK=7 /UG=Rn.58070 /UG_TITLE=ESTs BM383924 Phosphoinositide-3-kinase, regulatory subunit 6 Pik3r6 497932 NM_001081444 0005829 // cytosol // not recorded 0016301 // kinase activity // inferred from electronic annotation 1374318_at BE328978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE328978 /DB_XREF=gi:9202754 /DB_XREF=hq35f02.x1 /CLONE=IMAGE:3121371 /FEA=EST /CNT=7 /TID=Rn.52727.1 /TIER=Stack /STK=7 /UG=Rn.52727 /UG_TITLE=ESTs BE328978 BRCA1/BRCA2-containing complex, subunit 3 Brcc3 316794 NM_001127300 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // not recorded /// 0006302 // double-strand break repair // inferred from sequence or structural similarity /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010165 // response to X-ray // not recorded /// 0010212 // response to ionizing radiation // not recorded /// 0010212 // response to ionizing radiation // inferred from sequence or structural similarity /// 0016568 // chromatin modification // inferred from electronic annotation /// 0031572 // G2/M transition DNA damage checkpoint // not recorded /// 0031572 // G2/M transition DNA damage checkpoint // inferred from sequence or structural similarity /// 0045739 // positive regulation of DNA repair // not recorded /// 0045739 // positive regulation of DNA repair // inferred from sequence or structural similarity /// 0070536 // protein K63-linked deubiquitination // not recorded /// 0070536 // protein K63-linked deubiquitination // inferred from sequence or structural similarity /// 0070537 // histone H2A K63-linked deubiquitination // not recorded /// 0070537 // histone H2A K63-linked deubiquitination // inferred from sequence or structural similarity 0000151 // ubiquitin ligase complex // not recorded /// 0000152 // nuclear ubiquitin ligase complex // not recorded /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0070531 // BRCA1-A complex // not recorded /// 0070531 // BRCA1-A complex // inferred from sequence or structural similarity /// 0070552 // BRISC complex // not recorded /// 0070552 // BRISC complex // inferred from sequence or structural similarity 0004221 // ubiquitin thiolesterase activity // not recorded /// 0004221 // ubiquitin thiolesterase activity // inferred from sequence or structural similarity /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0004843 // ubiquitin-specific protease activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // not recorded /// 0008237 // metallopeptidase activity // inferred from sequence or structural similarity /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030234 // enzyme regulator activity // not recorded /// 0031593 // polyubiquitin binding // not recorded /// 0031593 // polyubiquitin binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1374319_at BF394096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394096 /DB_XREF=gi:11378960 /DB_XREF=UI-R-CA0-bgz-b-08-0-UI.s1 /CLONE=UI-R-CA0-bgz-b-08-0-UI /FEA=EST /CNT=7 /TID=Rn.63659.1 /TIER=Stack /STK=7 /UG=Rn.63659 /UG_TITLE=ESTs BF394096 1374320_at AI717113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717113 /DB_XREF=gi:5034369 /DB_XREF=UI-R-Y0-abe-b-05-0-UI.s1 /CLONE=UI-R-Y0-abe-b-05-0-UI /FEA=EST /CNT=7 /TID=Rn.39097.1 /TIER=Stack /STK=7 /UG=Rn.39097 /UG_TITLE=ESTs, Weakly similar to MFGM RAT LACTADHERIN PRECURSOR (R.norvegicus) AI717113 coagulation factor V (proaccelerin, labile factor) F5 304929 NM_001047878 0007155 // cell adhesion // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from direct assay /// 0007596 // blood coagulation // not recorded /// 0007598 // blood coagulation, extrinsic pathway // traceable author statement /// 0008015 // blood circulation // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // not recorded /// 0005886 // plasma membrane // not recorded /// 0031091 // platelet alpha granule // not recorded /// 0031093 // platelet alpha granule lumen // not recorded 0004252 // serine-type endopeptidase activity // inferred from direct assay /// 0005507 // copper ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374321_at AI227598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227598 /DB_XREF=gi:3811494 /DB_XREF=EST224302 /CLONE=RBRCJ21 /FEA=EST /CNT=7 /TID=Rn.11652.1 /TIER=Stack /STK=7 /UG=Rn.11652 /UG_TITLE=ESTs AI227598 similar to RIKEN cDNA 2700081O15 RGD1560108 499309 NM_001109161 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1374322_at AA893980 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893980 /DB_XREF=gi:3020859 /DB_XREF=EST197783 /CLONE=RPLAO19 /FEA=EST /CNT=7 /TID=Rn.7498.1 /TIER=Stack /STK=7 /UG=Rn.7498 /UG_TITLE=ESTs AA893980 1374323_at BM389139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389139 /DB_XREF=gi:18189192 /DB_XREF=UI-R-DZ0-cko-i-03-0-UI.s1 /CLONE=UI-R-DZ0-cko-i-03-0-UI /FEA=EST /CNT=7 /TID=Rn.7853.1 /TIER=Stack /STK=7 /UG=Rn.7853 /UG_TITLE=ESTs, Moderately similar to T47184 hypothetical protein DKFZp434F1526.1 (H.sapiens) BM389139 BRCA2 and CDKN1A interacting protein Bccip 361666 NM_001108505 0000079 // regulation of cyclin-dependent protein kinase activity // not recorded 0019908 // nuclear cyclin-dependent protein kinase holoenzyme complex // not recorded 0005515 // protein binding // not recorded /// 0019207 // kinase regulator activity // not recorded 1374324_at AA945828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945828 /DB_XREF=gi:4132617 /DB_XREF=EST201327 /CLONE=RLUAU72 /FEA=EST /CNT=7 /TID=Rn.17297.1 /TIER=Stack /STK=7 /UG=Rn.17297 /UG_TITLE=ESTs AA945828 1374325_at AI180129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180129 /DB_XREF=gi:3730767 /DB_XREF=EST223866 /CLONE=RSPCQ69 /FEA=EST /CNT=7 /TID=Rn.41864.1 /TIER=Stack /STK=7 /UG=Rn.41864 /UG_TITLE=ESTs AI180129 1374326_at AI178019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178019 /DB_XREF=gi:3728657 /DB_XREF=EST221676 /CLONE=RPLCK05 /FEA=EST /CNT=7 /TID=Rn.29169.1 /TIER=Stack /STK=7 /UG=Rn.29169 /UG_TITLE=ESTs AI178019 peter pan homolog (Drosophila) Ppan 298699 NM_001011980 0006412 // translation // inferred from electronic annotation 0005634 // nucleus // not recorded 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1374327_at AW531530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531530 /DB_XREF=gi:7173944 /DB_XREF=UI-R-BT1-aku-a-08-0-UI.s1 /CLONE=UI-R-BT1-aku-a-08-0-UI /FEA=EST /CNT=7 /TID=Rn.25002.1 /TIER=Stack /STK=7 /UG=Rn.25002 /UG_TITLE=ESTs AW531530 Bardet-Biedl syndrome 4 Bbs4 300754 NM_001106826 0000226 // microtubule cytoskeleton organization // not recorded /// 0001843 // neural tube closure // not recorded /// 0001895 // retina homeostasis // not recorded /// 0007286 // spermatid development // not recorded /// 0007608 // sensory perception of smell // not recorded /// 0016358 // dendrite development // not recorded /// 0019216 // regulation of lipid metabolic process // not recorded /// 0021756 // striatum development // not recorded /// 0021766 // hippocampus development // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0030534 // adult behavior // not recorded /// 0032465 // regulation of cytokinesis // not recorded /// 0033205 // cell cycle cytokinesis // not recorded /// 0033365 // protein localization in organelle // not recorded /// 0034454 // microtubule anchoring at centrosome // not recorded /// 0035058 // sensory cilium assembly // not recorded /// 0042384 // cilium assembly // not recorded /// 0045444 // fat cell differentiation // not recorded /// 0045494 // photoreceptor cell maintenance // not recorded /// 0045724 // positive regulation of flagellum assembly // not recorded /// 0046548 // retinal rod cell development // not recorded /// 0048854 // brain morphogenesis // not recorded /// 0051297 // centrosome organization // not recorded /// 0051457 // maintenance of protein location in nucleus // not recorded /// 0060271 // cilium morphogenesis // not recorded /// 0060296 // regulation of cilium beat frequency involved in ciliary motility // not recorded 0000242 // pericentriolar material // not recorded /// 0005813 // centrosome // not recorded /// 0005814 // centriole // not recorded /// 0005932 // microtubule basal body // not recorded /// 0031513 // nonmotile primary cilium // not recorded /// 0031514 // motile secondary cilium // not recorded /// 0034451 // centriolar satellite // not recorded /// 0034464 // BBSome // not recorded /// 0060170 // cilium membrane // not recorded 0003777 // microtubule motor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0034452 // dynactin binding // not recorded /// 0043014 // alpha-tubulin binding // not recorded /// 0048487 // beta-tubulin binding // not recorded 1374328_at BF403886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403886 /DB_XREF=gi:11391861 /DB_XREF=UI-R-CA1-bix-p-23-0-UI.s1 /CLONE=UI-R-CA1-bix-p-23-0-UI /FEA=EST /CNT=7 /TID=Rn.48.1 /TIER=Stack /STK=7 /UG=Rn.48 /UG_TITLE=ESTs BF403886 C2 calcium-dependent domain containing 3 C2cd3 293148 NM_001191602 /// XM_001066026 /// XM_215006 0001701 // in utero embryonic development // not recorded /// 0001947 // heart looping // not recorded /// 0007389 // pattern specification process // not recorded /// 0007420 // brain development // not recorded /// 0008589 // regulation of smoothened signaling pathway // not recorded /// 0016485 // protein processing // not recorded /// 0021915 // neural tube development // not recorded /// 0021997 // neural plate axis specification // not recorded /// 0030162 // regulation of proteolysis // not recorded /// 0030326 // embryonic limb morphogenesis // not recorded /// 0042384 // cilium assembly // not recorded /// 0042733 // embryonic digit morphogenesis // not recorded 0005932 // microtubule basal body // not recorded 1374329_at BI286364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286364 /DB_XREF=gi:14940937 /DB_XREF=UI-R-DE0-cak-b-02-0-UI.s1 /CLONE=UI-R-DE0-cak-b-02-0-UI /FEA=EST /CNT=7 /TID=Rn.15595.1 /TIER=Stack /STK=7 /UG=Rn.15595 /UG_TITLE=ESTs, Highly similar to DBS MOUSE GUANINE NUCLEOTIDE EXCHANGE FACTOR DBS (M.musculus) BI286364 1374330_at AI179459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179459 /DB_XREF=gi:4135164 /DB_XREF=EST223172 /CLONE=RSPCH65 /FEA=EST /CNT=7 /TID=Rn.31366.1 /TIER=Stack /STK=7 /UG=Rn.31366 /UG_TITLE=ESTs, Weakly similar to JC7265 neprilysin (EC 3.4.24.11) II - rat (R.norvegicus) AI179459 Kell blood group, metallo-endopeptidase Kel 297025 NM_001191611 /// XM_001068791 /// XM_216130 0006508 // proteolysis // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // not recorded /// 0005515 // protein binding // not recorded 1374331_at AI178068 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178068 /DB_XREF=gi:3728706 /DB_XREF=EST221727 /CLONE=RPLCK87 /FEA=EST /CNT=7 /TID=Rn.16592.1 /TIER=Stack /STK=7 /UG=Rn.16592 /UG_TITLE=ESTs AI178068 rcd1 (required for cell differentiation) homolog 1 (S. pombe) Rqcd1 301513 NM_001009357 0006350 // transcription // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374332_at AI171365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171365 /DB_XREF=gi:3711405 /DB_XREF=EST217321 /CLONE=RMUBJ75 /FEA=EST /CNT=7 /TID=Rn.22269.1 /TIER=Stack /STK=7 /UG=Rn.22269 /UG_TITLE=ESTs, Weakly similar to A57514 RNA helicase HEL117 - rat (R.norvegicus) AI171365 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 Ddx49 290660 NM_001115023 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1374333_at AI227700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227700 /DB_XREF=gi:3811587 /DB_XREF=EST224395 /CLONE=RBRCK39 /FEA=EST /CNT=7 /TID=Rn.3059.1 /TIER=Stack /STK=7 /UG=Rn.3059 /UG_TITLE=ESTs AI227700 similar to RIKEN cDNA 1110007C09 RGD1306058 361224 NM_001134572 0005515 // protein binding // inferred from electronic annotation 1374334_at AI412189 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412189 /DB_XREF=gi:4255693 /DB_XREF=EST240483 /CLONE=RKIEN15 /FEA=EST /CNT=7 /TID=Rn.7881.1 /TIER=Stack /STK=7 /UG=Rn.7881 /UG_TITLE=ESTs, Weakly similar to S25644 Ig mu chain C region - rat (R.norvegicus) AI412189 immunoglobulin heavy chain, alpha /// similar to immunoglobulin heavy chain Igha /// LOC366772 314487 /// 366772 1374335_at AA800786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800786 /DB_XREF=gi:4131538 /DB_XREF=EST190283 /CLONE=RLUAL43 /FEA=EST /CNT=7 /TID=Rn.8448.1 /TIER=Stack /STK=7 /UG=Rn.8448 /UG_TITLE=ESTs AA800786 1374336_at AI409666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409666 /DB_XREF=gi:4253170 /DB_XREF=EST237958 /CLONE=RKIDS73 /FEA=EST /CNT=7 /TID=Rn.27437.1 /TIER=Stack /STK=7 /UG=Rn.27437 /UG_TITLE=ESTs AI409666 1374337_at AI408954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408954 /DB_XREF=gi:4252458 /DB_XREF=EST237245 /CLONE=RKIDK63 /FEA=EST /CNT=7 /TID=Rn.43816.1 /TIER=Stack /STK=7 /UG=Rn.43816 /UG_TITLE=ESTs AI408954 ring finger protein 213 Rnf213 303735 XM_001081768 /// XM_221191 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1374338_at BI290720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290720 /DB_XREF=gi:14949556 /DB_XREF=UI-R-DK0-cfy-f-01-0-UI.s1 /CLONE=UI-R-DK0-cfy-f-01-0-UI /FEA=EST /CNT=7 /TID=Rn.19239.1 /TIER=Stack /STK=7 /UG=Rn.19239 /UG_TITLE=ESTs BI290720 C2 calcium-dependent domain containing 4D C2cd4d 361993 NM_001108558 1374339_at BI303362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303362 /DB_XREF=gi:14979642 /DB_XREF=UI-R-DR0-cjb-n-23-0-UI.s1 /CLONE=UI-R-DR0-cjb-n-23-0-UI /FEA=EST /CNT=7 /TID=Rn.8235.1 /TIER=Stack /STK=7 /UG=Rn.8235 /UG_TITLE=ESTs BI303362 1374340_at AA848536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848536 /DB_XREF=gi:2936076 /DB_XREF=EST191296 /CLONE=RKIAC90 /FEA=EST /CNT=7 /TID=Rn.25077.1 /TIER=Stack /STK=7 /UG=Rn.25077 /UG_TITLE=ESTs AA848536 1374341_at AI237866 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237866 /DB_XREF=gi:3831372 /DB_XREF=EST234428 /CLONE=RSPCT57 /FEA=EST /CNT=7 /TID=Rn.25455.1 /TIER=Stack /STK=7 /UG=Rn.25455 /UG_TITLE=ESTs AI237866 THAP domain containing 7 Thap7 287944 NM_001105863 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded /// 0070742 // C2H2 zinc finger domain binding // inferred from electronic annotation /// 0070742 // C2H2 zinc finger domain binding // not recorded 1374342_at BE096652 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096652 /DB_XREF=gi:8487542 /DB_XREF=UI-R-BU0-api-c-05-0-UI.s1 /CLONE=UI-R-BU0-api-c-05-0-UI /FEA=EST /CNT=7 /TID=Rn.41592.1 /TIER=Stack /STK=7 /UG=Rn.41592 /UG_TITLE=ESTs BE096652 lymphocyte antigen 6 complex, locus G6C Ly6g6c 294241 NM_001001969 1374343_at BF407189 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407189 /DB_XREF=gi:11395164 /DB_XREF=UI-R-BJ2-bqw-f-11-0-UI.s1 /CLONE=UI-R-BJ2-bqw-f-11-0-UI /FEA=EST /CNT=7 /TID=Rn.32028.1 /TIER=Stack /STK=7 /UG=Rn.32028 /UG_TITLE=ESTs BF407189 per1-like domain containing 1 Perld1 688174 NM_001143895 1374344_at AI711557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711557 /DB_XREF=gi:5001333 /DB_XREF=UI-R-AD1-zn-h-04-0-UI.s2 /CLONE=UI-R-AD1-zn-h-04-0-UI /FEA=EST /CNT=7 /TID=Rn.29880.1 /TIER=Stack /STK=7 /UG=Rn.29880 /UG_TITLE=ESTs AI711557 plasticity-related protein PRG-2-like /// lipid phosphate phosphatase-related protein type 3 LOC100363739 /// Lppr3 100363739 /// 314614 NM_181634 /// XM_002726873 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008195 // phosphatidate phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1374345_at AI111707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111707 /DB_XREF=gi:3511656 /DB_XREF=UI-R-Y0-mf-e-05-0-UI.s1 /CLONE=UI-R-Y0-mf-e-05-0-UI /FEA=EST /CNT=7 /TID=Rn.15962.1 /TIER=Stack /STK=7 /UG=Rn.15962 /UG_TITLE=ESTs AI111707 prostate stem cell antigen Psca 680210 NM_001172106 /// XM_002726936 /// XM_002729834 1374346_at AA894233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894233 /DB_XREF=gi:3021112 /DB_XREF=EST198036 /CLONE=RSPAT44 /FEA=EST /CNT=7 /TID=Rn.1357.1 /TIER=Stack /STK=7 /UG=Rn.1357 /UG_TITLE=ESTs AA894233 apoptosis-inducing factor, mitochondrion-associated 2 Aifm2 361843 NM_001139483 0006917 // induction of apoptosis // not recorded /// 0030261 // chromosome condensation // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // not recorded /// 0005829 // cytosol // not recorded 0003677 // DNA binding // not recorded /// 0004174 // electron-transferring-flavoprotein dehydrogenase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // not recorded 1374347_at BF412225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412225 /DB_XREF=gi:11400214 /DB_XREF=UI-R-BT1-bmz-e-12-0-UI.s1 /CLONE=UI-R-BT1-bmz-e-12-0-UI /FEA=EST /CNT=7 /TID=Rn.20505.1 /TIER=Stack /STK=7 /UG=Rn.20505 /UG_TITLE=ESTs BF412225 CDK5 regulatory subunit associated protein 1-like 1 Cdkal1 361243 NM_001108413 0009451 // RNA modification // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 1374348_at BG373082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373082 /DB_XREF=gi:13269619 /DB_XREF=UI-R-CV1-bsf-c-09-0-UI.s1 /CLONE=UI-R-CV1-bsf-c-09-0-UI /FEA=EST /CNT=7 /TID=Rn.21607.1 /TIER=Stack /STK=7 /UG=Rn.21607 /UG_TITLE=ESTs BG373082 OTU domain containing 7B Otud7b 310677 NM_001107697 0016579 // protein deubiquitination // not recorded /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1374349_at BE099937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099937 /DB_XREF=gi:8491821 /DB_XREF=UI-R-BJ1-atl-h-03-0-UI.s1 /CLONE=UI-R-BJ1-atl-h-03-0-UI /FEA=EST /CNT=7 /TID=Rn.26671.1 /TIER=Stack /STK=7 /UG=Rn.26671 /UG_TITLE=ESTs BE099937 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like Ctdspl 301056 NM_001106865 0016791 // phosphatase activity // inferred from electronic annotation 1374350_at BM382988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM382988 /DB_XREF=gi:18183041 /DB_XREF=UI-R-DS0-cjd-p-20-0-UI.s1 /CLONE=UI-R-DS0-cjd-p-20-0-UI /FEA=EST /CNT=7 /TID=Rn.3156.1 /TIER=Stack /STK=7 /UG=Rn.3156 /UG_TITLE=ESTs BM382988 1374351_at AI044117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044117 /DB_XREF=gi:3291020 /DB_XREF=UI-R-C1-jv-f-01-0-UI.s1 /CLONE=UI-R-C1-jv-f-01-0-UI /FEA=EST /CNT=7 /TID=Rn.9068.1 /TIER=Stack /STK=7 /UG=Rn.9068 /UG_TITLE=ESTs AI044117 1374352_at AI711147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711147 /DB_XREF=gi:5000923 /DB_XREF=UI-R-AD1-zo-f-12-0-UI.s1 /CLONE=UI-R-AD1-zo-f-12-0-UI /FEA=EST /CNT=7 /TID=Rn.3114.2 /TIER=Stack /STK=7 /UG=Rn.3114 /LL=29275 /UG_GENE=Actc1 /UG_TITLE=Actin, alpha, cardiac AI711147 actin, alpha, cardiac muscle 1 Actc1 29275 NM_019183 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006936 // muscle contraction // inferred from direct assay /// 0030048 // actin filament-based movement // inferred from electronic annotation /// 0030048 // actin filament-based movement // not recorded /// 0030240 // skeletal muscle thin filament assembly // inferred from electronic annotation /// 0030240 // skeletal muscle thin filament assembly // not recorded /// 0031032 // actomyosin structure organization // inferred from electronic annotation /// 0031032 // actomyosin structure organization // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0055003 // cardiac myofibril assembly // inferred from electronic annotation /// 0055003 // cardiac myofibril assembly // not recorded /// 0055008 // cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055008 // cardiac muscle tissue morphogenesis // not recorded /// 0060047 // heart contraction // not recorded /// 0060047 // heart contraction // inferred from electronic annotation /// 0060048 // cardiac muscle contraction // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // not recorded /// 0005884 // actin filament // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0030017 // sarcomere // not recorded /// 0030017 // sarcomere // inferred from electronic annotation /// 0031674 // I band // inferred from electronic annotation /// 0031674 // I band // not recorded /// 0042643 // actomyosin, actin part // inferred from electronic annotation /// 0042643 // actomyosin, actin part // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0017022 // myosin binding // inferred from electronic annotation /// 0017022 // myosin binding // not recorded 1374353_x_at AI711147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711147 /DB_XREF=gi:5000923 /DB_XREF=UI-R-AD1-zo-f-12-0-UI.s1 /CLONE=UI-R-AD1-zo-f-12-0-UI /FEA=EST /CNT=7 /TID=Rn.3114.2 /TIER=Stack /STK=7 /UG=Rn.3114 /LL=29275 /UG_GENE=Actc1 /UG_TITLE=Actin, alpha, cardiac AI711147 actin, alpha, cardiac muscle 1 Actc1 29275 NM_019183 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006936 // muscle contraction // inferred from direct assay /// 0030048 // actin filament-based movement // inferred from electronic annotation /// 0030048 // actin filament-based movement // not recorded /// 0030240 // skeletal muscle thin filament assembly // inferred from electronic annotation /// 0030240 // skeletal muscle thin filament assembly // not recorded /// 0031032 // actomyosin structure organization // inferred from electronic annotation /// 0031032 // actomyosin structure organization // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0055003 // cardiac myofibril assembly // inferred from electronic annotation /// 0055003 // cardiac myofibril assembly // not recorded /// 0055008 // cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055008 // cardiac muscle tissue morphogenesis // not recorded /// 0060047 // heart contraction // not recorded /// 0060047 // heart contraction // inferred from electronic annotation /// 0060048 // cardiac muscle contraction // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // not recorded /// 0005884 // actin filament // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0030017 // sarcomere // not recorded /// 0030017 // sarcomere // inferred from electronic annotation /// 0031674 // I band // inferred from electronic annotation /// 0031674 // I band // not recorded /// 0042643 // actomyosin, actin part // inferred from electronic annotation /// 0042643 // actomyosin, actin part // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0017022 // myosin binding // inferred from electronic annotation /// 0017022 // myosin binding // not recorded 1374354_at BE349704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE349704 /DB_XREF=gi:9261557 /DB_XREF=hq41h01.x1 /CLONE=IMAGE:3121969 /FEA=EST /CNT=7 /TID=Rn.48468.1 /TIER=Stack /STK=7 /UG=Rn.48468 /UG_TITLE=ESTs BE349704 PHD finger protein 19 Phf19 296653 NM_001106570 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1374355_at BI289733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289733 /DB_XREF=gi:14947616 /DB_XREF=UI-R-DK0-cfn-e-09-0-UI.s1 /CLONE=UI-R-DK0-cfn-e-09-0-UI /FEA=EST /CNT=7 /TID=Rn.46852.1 /TIER=Stack /STK=7 /UG=Rn.46852 /UG_TITLE=ESTs BI289733 family with sequence similarity 113, member B Fam113b 315283 NM_001039454 0016787 // hydrolase activity // inferred from electronic annotation 1374356_at BI298463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298463 /DB_XREF=gi:14974743 /DB_XREF=UI-R-CV2-chi-f-06-0-UI.s1 /CLONE=UI-R-CV2-chi-f-06-0-UI /FEA=EST /CNT=7 /TID=Rn.53199.1 /TIER=Stack /STK=7 /UG=Rn.53199 /UG_TITLE=ESTs BI298463 similar to tripartite motif protein 32 LOC302999 302999 XM_002724594 /// XM_002727731 1374357_at AI713763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI713763 /DB_XREF=gi:5017563 /DB_XREF=UI-R-AG1-aao-h-06-0-UI.s1 /CLONE=UI-R-AG1-aao-h-06-0-UI /FEA=EST /CNT=7 /TID=Rn.40981.1 /TIER=Stack /STK=7 /UG=Rn.40981 /UG_TITLE=ESTs AI713763 phosphatidylinositol glycan anchor biosynthesis, class U Pigu 353304 NM_181637 0006506 // GPI anchor biosynthetic process // inferred from electronic annotation /// 0006506 // GPI anchor biosynthetic process // not recorded /// 0016255 // attachment of GPI anchor to protein // not recorded /// 0046425 // regulation of JAK-STAT cascade // inferred from electronic annotation /// 0046425 // regulation of JAK-STAT cascade // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042765 // GPI-anchor transamidase complex // not recorded /// 0042765 // GPI-anchor transamidase complex // inferred from sequence or structural similarity /// 0042765 // GPI-anchor transamidase complex // inferred from electronic annotation 1374358_at BE098806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098806 /DB_XREF=gi:8490675 /DB_XREF=UI-R-BJ1-ate-a-11-0-UI.s1 /CLONE=UI-R-BJ1-ate-a-11-0-UI /FEA=EST /CNT=7 /TID=Rn.17341.1 /TIER=Stack /STK=7 /UG=Rn.17341 /UG_TITLE=ESTs, Moderately similar to T14771 hypothetical protein DKFZp566F084.1 (H.sapiens) BE098806 similar to CG13901-PA RGD1307648 294004 NM_001013905 0005515 // protein binding // inferred from electronic annotation 1374359_at BM383329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383329 /DB_XREF=gi:18183382 /DB_XREF=UI-R-CV2-cia-d-03-0-UI.s2 /CLONE=UI-R-CV2-cia-d-03-0-UI /FEA=EST /CNT=7 /TID=Rn.32906.1 /TIER=Stack /STK=7 /UG=Rn.32906 /UG_TITLE=ESTs, Weakly similar to T13693 hypothetical protein EG:EG0003.5 - fruit fly (D.melanogaster) BM383329 cyclin E2 Ccne2 362485 NM_001108656 0006270 // DNA-dependent DNA replication initiation // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0042325 // regulation of phosphorylation // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0051301 // cell division // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded /// 0016538 // cyclin-dependent protein kinase regulator activity // not recorded 1374360_at BI298458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298458 /DB_XREF=gi:14974738 /DB_XREF=UI-R-CV2-chi-e-10-0-UI.s1 /CLONE=UI-R-CV2-chi-e-10-0-UI /FEA=EST /CNT=7 /TID=Rn.9262.2 /TIER=Stack /STK=7 /UG=Rn.9262 /LL=64515 /UG_GENE=Cdc20 /UG_TITLE=cell cycle protein p55CDC BI298458 Cell division cycle 20 homolog (S. cerevisiae) Cdc20 64515 NM_171993 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0050773 // regulation of dendrite development // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0005654 // nucleoplasm // not recorded /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0019899 // enzyme binding // not recorded 1374361_at BI276503 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276503 /DB_XREF=gi:14921469 /DB_XREF=UI-R-CX0-bwv-b-03-0-UI.s1 /CLONE=UI-R-CX0-bwv-b-03-0-UI /FEA=EST /CNT=7 /TID=Rn.12851.1 /TIER=Stack /STK=7 /UG=Rn.12851 /UG_TITLE=ESTs BI276503 malonyl CoA:ACP acyltransferase (mitochondrial) Mcat 315173 NM_001191788 /// XM_001077904 /// XM_235527 0006633 // fatty acid biosynthetic process // not recorded /// 0008152 // metabolic process // not recorded 0005739 // mitochondrion // not recorded 0004314 // [acyl-carrier-protein] S-malonyltransferase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016740 // transferase activity // not recorded 1374362_at BF412970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412970 /DB_XREF=gi:11400959 /DB_XREF=UI-R-CA0-boc-h-11-0-UI.s1 /CLONE=UI-R-CA0-boc-h-11-0-UI /FEA=EST /CNT=7 /TID=Rn.18256.1 /TIER=Stack /STK=7 /UG=Rn.18256 /UG_TITLE=ESTs, Weakly similar to TRHY_HUMAN TRICHOHYALI (H.sapiens) BF412970 zinc finger protein 821 Znf821 307834 XR_085684 /// XR_086097 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1374363_at AI232693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232693 /DB_XREF=gi:3816573 /DB_XREF=EST229381 /CLONE=RKICF24 /FEA=EST /CNT=7 /TID=Rn.25064.1 /TIER=Stack /STK=7 /UG=Rn.25064 /UG_TITLE=ESTs, Weakly similar to T13744 hypothetical protein EG:22E5.5 - fruit fly (D.melanogaster) AI232693 apoptosis-inducing factor, mitochondrion-associated 3 Aifm3 303786 NM_001013977 0006917 // induction of apoptosis // not recorded /// 0008635 // activation of caspase activity by cytochrome c // not recorded /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0051882 // mitochondrial depolarization // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // not recorded /// 0008656 // caspase activator activity // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation 1374364_at BI277805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277805 /DB_XREF=gi:14924035 /DB_XREF=UI-R-CZ0-byb-g-03-0-UI.s1 /CLONE=UI-R-CZ0-byb-g-03-0-UI /FEA=EST /CNT=7 /TID=Rn.50677.1 /TIER=Stack /STK=7 /UG=Rn.50677 /UG_TITLE=ESTs BI277805 family with sequence similarity 193, member B Fam193b 498703 NM_001170408 1374365_at BI300732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300732 /DB_XREF=gi:14977012 /DB_XREF=UI-R-CV2-cii-g-03-0-UI.s1 /CLONE=UI-R-CV2-cii-g-03-0-UI /FEA=EST /CNT=7 /TID=Rn.67018.1 /TIER=Stack /STK=7 /UG=Rn.67018 /UG_TITLE=ESTs BI300732 1374366_at AI556941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556941 /DB_XREF=gi:4489304 /DB_XREF=UI-R-C2p-rp-g-05-0-UI.s1 /CLONE=UI-R-C2p-rp-g-05-0-UI /FEA=EST /CNT=7 /TID=Rn.7960.1 /TIER=Stack /STK=7 /UG=Rn.7960 /UG_TITLE=ESTs AI556941 solute carrier family 39 (zinc transporter), member 4 Slc39a4 300051 NM_001077669 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006829 // zinc ion transport // inferred from electronic annotation /// 0006829 // zinc ion transport // not recorded /// 0006882 // cellular zinc ion homeostasis // inferred from electronic annotation /// 0006882 // cellular zinc ion homeostasis // not recorded /// 0015674 // di-, tri-valent inorganic cation transport // not recorded /// 0030001 // metal ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0071577 // zinc ion transmembrane transport // not recorded 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0055038 // recycling endosome membrane // inferred from electronic annotation 0005385 // zinc ion transmembrane transporter activity // inferred from electronic annotation /// 0005385 // zinc ion transmembrane transporter activity // not recorded /// 0046873 // metal ion transmembrane transporter activity // inferred from electronic annotation 1374367_at BF419840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419840 /DB_XREF=gi:11407829 /DB_XREF=UI-R-CA0-bpg-h-03-0-UI.s1 /CLONE=UI-R-CA0-bpg-h-03-0-UI /FEA=EST /CNT=7 /TID=Rn.51805.1 /TIER=Stack /STK=7 /UG=Rn.51805 /UG_TITLE=ESTs BF419840 glutaredoxin, cysteine rich 1 Grxcr1 498355 NM_001191935 /// XM_001077572 /// XM_573590 0007605 // sensory perception of sound // not recorded /// 0042491 // auditory receptor cell differentiation // not recorded /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0048563 // post-embryonic organ morphogenesis // not recorded /// 0048839 // inner ear development // not recorded /// 0060118 // vestibular receptor cell development // not recorded /// 0060119 // inner ear receptor cell development // not recorded /// 0060122 // inner ear receptor stereocilium organization // not recorded 0032420 // stereocilium // not recorded /// 0060091 // kinocilium // not recorded 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation 1374368_at BI291066 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291066 /DB_XREF=gi:14950263 /DB_XREF=UI-R-DK0-cgf-a-11-0-UI.s1 /CLONE=UI-R-DK0-cgf-a-11-0-UI /FEA=EST /CNT=7 /TID=Rn.25222.1 /TIER=Stack /STK=7 /UG=Rn.25222 /UG_TITLE=ESTs BI291066 transmembrane protein 164 Tmem164 367763 NM_001109014 1374369_at BF415686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415686 /DB_XREF=gi:11403680 /DB_XREF=UI-R-CA1-bkd-e-09-0-UI.s1 /CLONE=UI-R-CA1-bkd-e-09-0-UI /FEA=EST /CNT=7 /TID=Rn.63437.1 /TIER=Stack /STK=7 /UG=Rn.63437 /UG_TITLE=ESTs BF415686 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 Raph1 363239 NM_001108798 0007165 // signal transduction // inferred from electronic annotation 1374370_at BF403383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403383 /DB_XREF=gi:11391398 /DB_XREF=UI-R-CA1-biy-h-15-0-UI.s1 /CLONE=UI-R-CA1-biy-h-15-0-UI /FEA=EST /CNT=7 /TID=Rn.15631.1 /TIER=Stack /STK=7 /UG=Rn.15631 /UG_TITLE=ESTs BF403383 1374371_at BF394660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394660 /DB_XREF=gi:11379617 /DB_XREF=UI-R-CA0-bfy-d-03-0-UI.s1 /CLONE=UI-R-CA0-bfy-d-03-0-UI /FEA=EST /CNT=7 /TID=Rn.60115.1 /TIER=Stack /STK=7 /UG=Rn.60115 /UG_TITLE=ESTs BF394660 1374372_at BF392147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392147 /DB_XREF=gi:11377004 /DB_XREF=UI-R-CA0-bfe-g-07-0-UI.s1 /CLONE=UI-R-CA0-bfe-g-07-0-UI /FEA=EST /CNT=7 /TID=Rn.63512.1 /TIER=Stack /STK=7 /UG=Rn.63512 /UG_TITLE=ESTs BF392147 1374373_at BF393390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393390 /DB_XREF=gi:11378251 /DB_XREF=UI-R-CA0-bgc-d-03-0-UI.s1 /CLONE=UI-R-CA0-bgc-d-03-0-UI /FEA=EST /CNT=7 /TID=Rn.61447.1 /TIER=Stack /STK=7 /UG=Rn.61447 /UG_TITLE=ESTs, Weakly similar to APXL_HUMAN APICAL-LIKE PROTEIN (H.sapiens) BF393390 shroom family member 1 Shroom1 287285 XM_001073965 /// XM_213289 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0051017 // actin filament bundle assembly // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0016460 // myosin II complex // not recorded 0051015 // actin filament binding // not recorded 1374374_x_at BF393390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393390 /DB_XREF=gi:11378251 /DB_XREF=UI-R-CA0-bgc-d-03-0-UI.s1 /CLONE=UI-R-CA0-bgc-d-03-0-UI /FEA=EST /CNT=7 /TID=Rn.61447.1 /TIER=Stack /STK=7 /UG=Rn.61447 /UG_TITLE=ESTs, Weakly similar to APXL_HUMAN APICAL-LIKE PROTEIN (H.sapiens) BF393390 shroom family member 1 Shroom1 287285 XM_001073965 /// XM_213289 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0051017 // actin filament bundle assembly // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0016460 // myosin II complex // not recorded 0051015 // actin filament binding // not recorded 1374375_at AI406903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406903 /DB_XREF=gi:4250407 /DB_XREF=EST235191 /CLONE=ROVDU53 /FEA=EST /CNT=7 /TID=Rn.13689.1 /TIER=Stack /STK=7 /UG=Rn.13689 /UG_TITLE=ESTs AI406903 similar to 2610034M16Rik protein RGD1560925 501196 XM_002727252 /// XM_002730059 0005515 // protein binding // inferred from electronic annotation 1374376_at BM386483 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386483 /DB_XREF=gi:18186536 /DB_XREF=UI-R-CN1-cjg-i-07-0-UI.s1 /CLONE=UI-R-CN1-cjg-i-07-0-UI /FEA=EST /CNT=7 /TID=Rn.33912.1 /TIER=Stack /STK=7 /UG=Rn.33912 /UG_TITLE=ESTs, Moderately similar to T30867 Rho-guanine nucleotide exchange factor - mouse (M.musculus) BM386483 Rho-guanine nucleotide exchange factor Rgnef 361882 NM_001108542 0021955 // central nervous system neuron axonogenesis // inferred from electronic annotation /// 0021955 // central nervous system neuron axonogenesis // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0060052 // neurofilament cytoskeleton organization // inferred from electronic annotation /// 0060052 // neurofilament cytoskeleton organization // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1374377_at AA799657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799657 /DB_XREF=gi:2862612 /DB_XREF=EST189154 /CLONE=RHEAD66 /FEA=EST /CNT=7 /TID=Rn.6214.1 /TIER=Stack /STK=7 /UG=Rn.6214 /UG_TITLE=ESTs, Weakly similar to S68418 protein phosphatase 1M chain M110 isoform - rat (R.norvegicus) AA799657 similar to NFkB interacting protein 1 LOC686781 686781 XM_001075705 /// XM_002728700 1374378_at BF413271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413271 /DB_XREF=gi:11401260 /DB_XREF=UI-R-BT1-bny-h-01-0-UI.s1 /CLONE=UI-R-BT1-bny-h-01-0-UI /FEA=EST /CNT=7 /TID=Rn.62293.1 /TIER=Stack /STK=7 /UG=Rn.62293 /UG_TITLE=ESTs, Weakly similar to ARF6_HUMAN ADP-RIBOSYLATION FACTOR 6 (R.norvegicus) BF413271 ADP-ribosylation factor-like 9 Arl9 289565 NM_212459 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1374379_at BF396810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396810 /DB_XREF=gi:11381791 /DB_XREF=UI-R-BS2-bev-d-04-0-UI.s1 /CLONE=UI-R-BS2-bev-d-04-0-UI /FEA=EST /CNT=7 /TID=Rn.45931.1 /TIER=Stack /STK=7 /UG=Rn.45931 /UG_TITLE=ESTs BF396810 1374380_at BF403474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403474 /DB_XREF=gi:11391449 /DB_XREF=UI-R-CA1-biz-b-06-0-UI.s1 /CLONE=UI-R-CA1-biz-b-06-0-UI /FEA=EST /CNT=8 /TID=Rn.60433.1 /TIER=Stack /STK=7 /UG=Rn.60433 /UG_TITLE=ESTs BF403474 1374381_at BI296663 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296663 /DB_XREF=gi:14961315 /DB_XREF=UI-R-CV2-cgt-h-04-0-UI.s1 /CLONE=UI-R-CV2-cgt-h-04-0-UI /FEA=EST /CNT=7 /TID=Rn.79904.1 /TIER=Stack /STK=7 /UG=Rn.79904 /UG_TITLE=ESTs BI296663 1374382_at BF399385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399385 /DB_XREF=gi:11384389 /DB_XREF=UI-R-CA1-bjb-m-22-0-UI.s1 /CLONE=UI-R-CA1-bjb-m-22-0-UI /FEA=EST /CNT=7 /TID=Rn.59174.1 /TIER=Stack /STK=7 /UG=Rn.59174 /UG_TITLE=ESTs BF399385 1374383_at BE121006 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121006 /DB_XREF=gi:8513111 /DB_XREF=UI-R-CA0-bar-a-08-0-UI.s1 /CLONE=UI-R-CA0-bar-a-08-0-UI /FEA=EST /CNT=7 /TID=Rn.53709.1 /TIER=Stack /STK=7 /UG=Rn.53709 /UG_TITLE=ESTs BE121006 1374384_at BF543345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543345 /DB_XREF=gi:11634452 /DB_XREF=UI-R-Y0-abg-d-10-0-UI.r1 /CLONE=UI-R-Y0-abg-d-10-0-UI /FEA=EST /CNT=7 /TID=Rn.81172.1 /TIER=Stack /STK=7 /UG=Rn.81172 /UG_TITLE=ESTs, Highly similar to GAMMA CRYSTALLIN A (R.norvegicus) BF543345 crystallin, gamma A Cryga 684028 NM_001080936 0001654 // eye development // not recorded /// 0002088 // lens development in camera-type eye // inferred from expression pattern /// 0002088 // lens development in camera-type eye // not recorded 0005212 // structural constituent of eye lens // inferred from electronic annotation 1374385_at AI009789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009789 /DB_XREF=gi:3223621 /DB_XREF=EST204240 /CLONE=RLUBO46 /FEA=EST /CNT=31 /TID=Rn.1267.1 /TIER=Stack /STK=6 /UG=Rn.1267 /UG_TITLE=ESTs, Highly similar to AF139894 1 RNA-binding protein alpha-CP1 (M.musculus) AI009789 poly(rC) binding protein 1 Pcbp1 500242 XM_002726408 /// XM_575592 0003723 // RNA binding // inferred from electronic annotation 1374386_at AI412423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412423 /DB_XREF=gi:4255927 /DB_XREF=EST240722 /CLONE=RBRDO80 /FEA=EST /CNT=28 /TID=Rn.2569.1 /TIER=Stack /STK=6 /UG=Rn.2569 /UG_TITLE=ESTs AI412423 1374387_at BG662580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG662580 /DB_XREF=gi:13884502 /DB_XREF=DRAAJA06 /CLONE=DRAAJA06 /FEA=EST /CNT=30 /TID=Rn.22056.1 /TIER=Stack /STK=6 /UG=Rn.22056 /UG_TITLE=ESTs BG662580 ADP-ribosylation-like factor 6 interacting protein 5 Arl6ip5 66028 NM_023972 0015813 // L-glutamate transport // inferred from electronic annotation /// 0015813 // L-glutamate transport // not recorded /// 0051051 // negative regulation of transport // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from direct assay 1374388_at AI408294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408294 /DB_XREF=gi:4251798 /DB_XREF=EST236584 /CLONE=ROVEH59 /FEA=EST /CNT=30 /TID=Rn.9454.1 /TIER=Stack /STK=6 /UG=Rn.9454 /UG_TITLE=ESTs, Highly similar to H33_HUMAN HISTONE H3.3 (M.musculus) AI408294 EF-hand domain family, member D2 Efhd2 298609 NM_001031648 0016020 // membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374389_at BF399387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399387 /DB_XREF=gi:11384391 /DB_XREF=UI-R-CA1-bjb-o-04-0-UI.s1 /CLONE=UI-R-CA1-bjb-o-04-0-UI /FEA=EST /CNT=25 /TID=Rn.6112.1 /TIER=Stack /STK=6 /UG=Rn.6112 /UG_TITLE=ESTs BF399387 guanylate cyclase 1, soluble, beta 3 Gucy1b3 25202 NM_012769 0006182 // cGMP biosynthetic process // inferred from direct assay /// 0006182 // cGMP biosynthetic process // inferred from electronic annotation /// 0007263 // nitric oxide mediated signal transduction // inferred from direct assay /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0008074 // guanylate cyclase complex, soluble // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // inferred from direct assay /// 0004383 // guanylate cyclase activity // traceable author statement /// 0004383 // guanylate cyclase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from direct assay /// 0020037 // heme binding // inferred from electronic annotation /// 0043167 // ion binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0051879 // Hsp90 protein binding // inferred from direct assay 1374390_at AI716420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716420 /DB_XREF=gi:5033673 /DB_XREF=UI-R-Y0-abg-g-09-0-UI.s1 /CLONE=UI-R-Y0-abg-g-09-0-UI /FEA=EST /CNT=24 /TID=Rn.17722.1 /TIER=Stack /STK=6 /UG=Rn.17722 /UG_TITLE=ESTs AI716420 similar to Protein UNQ655/PRO1286 homolog precursor LOC690344 690344 NM_001168661 0005576 // extracellular region // inferred from electronic annotation 1374391_at BF408611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408611 /DB_XREF=gi:11396586 /DB_XREF=UI-R-BJ2-brf-g-09-0-UI.s1 /CLONE=UI-R-BJ2-brf-g-09-0-UI /FEA=EST /CNT=23 /TID=Rn.16457.1 /TIER=Stack /STK=6 /UG=Rn.16457 /UG_TITLE=ESTs, Moderately similar to SARL_HUMAN SARCOLIPIN (H.sapiens) BF408611 sarcolipin Sln 367086 NM_001013247 0006816 // calcium ion transport // inferred from electronic annotation /// 0051924 // regulation of calcium ion transport // inferred from sequence or structural similarity 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from sequence or structural similarity /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0033017 // sarcoplasmic reticulum membrane // inferred from electronic annotation 0005246 // calcium channel regulator activity // inferred from electronic annotation /// 0030234 // enzyme regulator activity // inferred from electronic annotation /// 0042030 // ATPase inhibitor activity // inferred from electronic annotation 1374392_at BE113385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113385 /DB_XREF=gi:8505490 /DB_XREF=UI-R-BJ1-awe-g-04-0-UI.s1 /CLONE=UI-R-BJ1-awe-g-04-0-UI /FEA=EST /CNT=23 /TID=Rn.1782.1 /TIER=Stack /STK=6 /UG=Rn.1782 /UG_TITLE=ESTs BE113385 1374393_at AI169080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169080 /DB_XREF=gi:3705388 /DB_XREF=EST214909 /CLONE=RKIBM77 /FEA=EST /CNT=21 /TID=Rn.7492.1 /TIER=Stack /STK=6 /UG=Rn.7492 /UG_TITLE=ESTs, Weakly similar to T15B7.2.p (Caenorhabditis elegans) (C.elegans) AI169080 protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b Ptplb 288058 XM_001071670 /// XM_213610 0005515 // protein binding // not recorded 1374394_at AI105305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105305 /DB_XREF=gi:4134335 /DB_XREF=EST214594 /CLONE=RKIBI59 /FEA=EST /CNT=20 /TID=Rn.12104.1 /TIER=Stack /STK=6 /UG=Rn.12104 /UG_TITLE=ESTs AI105305 WW domain binding protein 2 Wbp2 192645 NM_138975 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1374395_at AI102825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102825 /DB_XREF=gi:3707493 /DB_XREF=EST212114 /CLONE=REMBT35 /FEA=EST /CNT=18 /TID=Rn.9454.2 /TIER=Stack /STK=6 /UG=Rn.9454 /UG_TITLE=ESTs, Highly similar to H33_HUMAN HISTONE H3.3 (M.musculus) AI102825 1374396_at BI293306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293306 /DB_XREF=gi:14954686 /DB_XREF=UI-R-DK0-cdn-d-10-0-UI.s1 /CLONE=UI-R-DK0-cdn-d-10-0-UI /FEA=EST /CNT=28 /TID=Rn.32254.1 /TIER=Stack /STK=6 /UG=Rn.32254 /UG_TITLE=ESTs, Highly similar to VATC_MOUSE VACUOLAR ATP SYNTHASE SUBUNIT C (V-ATPASE C SUBUNIT) (VACUOLAR PROTON PUMP C SUBUNIT) (M.musculus) BI293306 ATPase, H+ transporting, lysosomal V1 subunit C1 Atp6v1c1 299971 NM_001011992 0006200 // ATP catabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0015992 // proton transport // not recorded /// 0034220 // ion transmembrane transport // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0033180 // proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008553 // hydrogen-exporting ATPase activity, phosphorylative mechanism // inferred from electronic annotation /// 0008553 // hydrogen-exporting ATPase activity, phosphorylative mechanism // not recorded /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation 1374397_at BE107498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107498 /DB_XREF=gi:8499603 /DB_XREF=UI-R-BS1-ayu-d-06-0-UI.s1 /CLONE=UI-R-BS1-ayu-d-06-0-UI /FEA=EST /CNT=32 /TID=Rn.13636.1 /TIER=Stack /STK=6 /UG=Rn.13636 /UG_TITLE=ESTs, Highly similar to eukaryotic translation initiation factor 2, subunit 2 (beta, 38kDa) (Mus musculus) (M.musculus) BE107498 eukaryotic translation initiation factor 2, subunit 2 beta Eif2s2 296302 NM_199380 0006413 // translational initiation // inferred from electronic annotation 0005829 // cytosol // not recorded 0003743 // translation initiation factor activity // not recorded /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374398_at AI178787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178787 /DB_XREF=gi:3729425 /DB_XREF=EST222469 /CLONE=RSPBM59 /FEA=EST /CNT=19 /TID=Rn.7144.1 /TIER=Stack /STK=6 /UG=Rn.7144 /UG_TITLE=ESTs, Highly similar to T30810 chromatin structure regulator Supt6h - mouse (M.musculus) AI178787 suppressor of Ty 6 homolog (S. cerevisiae) Supt6h 303281 NM_001191820 /// XM_001080796 /// XM_239258 0005515 // protein binding // inferred from electronic annotation 1374399_at AA801107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA801107 /DB_XREF=gi:2864062 /DB_XREF=EST190604 /CLONE=ROVAA59 /FEA=EST /CNT=18 /TID=Rn.4145.1 /TIER=Stack /STK=6 /UG=Rn.4145 /UG_TITLE=ESTs, Weakly similar to EPIDERMAL GROWTH FACTOR RECEPTOR SUBSTRATE SUBSTRATE 15 (M.musculus) AA801107 EH-domain containing 4 Ehd4 192204 NM_139324 0006907 // pinocytosis // inferred from mutant phenotype /// 0030100 // regulation of endocytosis // inferred from mutant phenotype 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded 0003924 // GTPase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1374400_at BI291528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291528 /DB_XREF=gi:14951154 /DB_XREF=UI-R-DM0-cis-n-09-0-UI.s1 /CLONE=UI-R-DM0-cis-n-09-0-UI /FEA=EST /CNT=27 /TID=Rn.26059.1 /TIER=Stack /STK=6 /UG=Rn.26059 /UG_TITLE=ESTs BI291528 EFR3 homolog A (S. cerevisiae) Efr3a 362923 NM_001130564 0005622 // intracellular // not recorded /// 0005886 // plasma membrane // not recorded 0005488 // binding // inferred from electronic annotation 1374401_at AI549249 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549249 /DB_XREF=gi:4466737 /DB_XREF=UI-R-C3-tx-d-07-0-UI.s1 /CLONE=UI-R-C3-tx-d-07-0-UI /FEA=EST /CNT=22 /TID=Rn.1090.1 /TIER=Stack /STK=6 /UG=Rn.1090 /UG_TITLE=ESTs, Weakly similar to sorting nexin 1 (Rattus norvegicus) (R.norvegicus) AI549249 sorting nexin 2 Snx2 291464 NM_001106135 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1374402_at BM391160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391160 /DB_XREF=gi:18191213 /DB_XREF=UI-R-DY0-ckq-c-01-0-UI.s1 /CLONE=UI-R-DY0-ckq-c-01-0-UI /FEA=EST /CNT=16 /TID=Rn.3261.1 /TIER=Stack /STK=6 /UG=Rn.3261 /UG_TITLE=ESTs BM391160 1374403_at BF412072 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412072 /DB_XREF=gi:11400061 /DB_XREF=UI-R-BT1-bmy-c-07-0-UI.s1 /CLONE=UI-R-BT1-bmy-c-07-0-UI /FEA=EST /CNT=15 /TID=Rn.12086.1 /TIER=Stack /STK=6 /UG=Rn.12086 /UG_TITLE=ESTs BF412072 ephrin B1 Efnb1 25186 NM_017089 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from mutant phenotype /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // traceable author statement /// 0007411 // axon guidance // inferred from electronic annotation /// 0009880 // embryonic pattern specification // inferred from electronic annotation /// 0009880 // embryonic pattern specification // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0048013 // ephrin receptor signaling pathway // traceable author statement 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded /// 0045202 // synapse // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0046875 // ephrin receptor binding // not recorded /// 0046875 // ephrin receptor binding // traceable author statement /// 0046875 // ephrin receptor binding // inferred from electronic annotation 1374404_at BI288619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288619 /DB_XREF=gi:14945383 /DB_XREF=UI-R-DK0-cdd-a-04-0-UI.s1 /CLONE=UI-R-DK0-cdd-a-04-0-UI /FEA=EST /CNT=25 /TID=Rn.7672.1 /TIER=Stack /STK=6 /UG=Rn.7672 /UG_TITLE=ESTs BI288619 Jun oncogene Jun 24516 NM_021835 0001525 // angiogenesis // inferred from mutant phenotype /// 0001836 // release of cytochrome c from mitochondria // inferred from mutant phenotype /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007184 // SMAD protein nuclear translocation // inferred from electronic annotation /// 0007184 // SMAD protein nuclear translocation // not recorded /// 0007568 // aging // inferred from expression pattern /// 0007612 // learning // inferred from mutant phenotype /// 0007623 // circadian rhythm // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009987 // cellular process // inferred from electronic annotation /// 0009987 // cellular process // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0031953 // negative regulation of protein autophosphorylation // inferred from electronic annotation /// 0031953 // negative regulation of protein autophosphorylation // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0035026 // leading edge cell differentiation // inferred from electronic annotation /// 0035026 // leading edge cell differentiation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043392 // negative regulation of DNA binding // inferred from electronic annotation /// 0043392 // negative regulation of DNA binding // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0043923 // positive regulation by host of viral transcription // inferred from electronic annotation /// 0043923 // positive regulation by host of viral transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045657 // positive regulation of monocyte differentiation // inferred from direct assay /// 0045740 // positive regulation of DNA replication // inferred from mutant phenotype /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from direct assay /// 0051365 // cellular response to potassium ion starvation // inferred from mutant phenotype /// 0051591 // response to cAMP // inferred from expression pattern /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded /// 0051899 // membrane depolarization // inferred from direct assay /// 0060395 // SMAD protein signal transduction // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // not recorded 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from mutant phenotype /// 0005667 // transcription factor complex // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from mutant phenotype /// 0003702 // RNA polymerase II transcription factor activity // traceable author statement /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0005100 // Rho GTPase activator activity // inferred from electronic annotation /// 0005100 // Rho GTPase activator activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // traceable author statement /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // traceable author statement /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred by curator /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046982 // protein heterodimerization activity // traceable author statement /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0070412 // R-SMAD binding // inferred from electronic annotation /// 0070412 // R-SMAD binding // not recorded 1374405_at AI233336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233336 /DB_XREF=gi:3817216 /DB_XREF=EST230024 /CLONE=RKIDD78 /FEA=EST /CNT=23 /TID=Rn.8630.1 /TIER=Stack /STK=6 /UG=Rn.8630 /UG_TITLE=ESTs AI233336 heterogeneous nuclear ribonucleoprotein A3 Hnrnpa3 362152 NM_001111294 /// NM_001111295 /// NM_198132 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0051028 // mRNA transport // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from mutant phenotype /// 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030530 // heterogeneous nuclear ribonucleoprotein complex // inferred from mutant phenotype 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0051033 // RNA transmembrane transporter activity // inferred from mutant phenotype 1374406_at AA925512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925512 /DB_XREF=gi:4236703 /DB_XREF=UI-R-A1-ep-d-09-0-UI.s1 /CLONE=UI-R-A1-ep-d-09-0-UI /FEA=EST /CNT=16 /TID=Rn.14688.1 /TIER=Stack /STK=6 /UG=Rn.14688 /UG_TITLE=ESTs, Weakly similar to A56088 host cell factor C1 precursor (H.sapiens) AA925512 kelch domain containing 2 Klhdc2 299113 NM_001034133 0007018 // microtubule-based movement // traceable author statement 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374407_at AI227970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227970 /DB_XREF=gi:3811857 /DB_XREF=EST224665 /CLONE=RBRCO21 /FEA=EST /CNT=15 /TID=Rn.16023.1 /TIER=Stack /STK=6 /UG=Rn.16023 /UG_TITLE=ESTs AI227970 general transcription factor IIIC, polypeptide 5 Gtf3c5 362095 NM_001079941 0000127 // transcription factor TFIIIC complex // not recorded 0005515 // protein binding // not recorded 1374408_at AI410173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410173 /DB_XREF=gi:4253677 /DB_XREF=EST238466 /CLONE=RKIEB45 /FEA=EST /CNT=15 /TID=Rn.17163.1 /TIER=Stack /STK=6 /UG=Rn.17163 /UG_TITLE=ESTs, Weakly similar to G01227 recepin (H.sapiens) AI410173 corepressor interacting with RBPJ, 1 Cir1 362149 NM_001007799 0006350 // transcription // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation 0005515 // protein binding // not recorded 1374409_at AW253760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253760 /DB_XREF=gi:6597351 /DB_XREF=UI-R-BJ0-acz-a-11-0-UI.s1 /CLONE=UI-R-BJ0-acz-a-11-0-UI /FEA=EST /CNT=15 /TID=Rn.19495.1 /TIER=Stack /STK=6 /UG=Rn.19495 /UG_TITLE=ESTs AW253760 TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor Taf6l 309194 NM_001107575 0006352 // transcription initiation // inferred from electronic annotation /// 0043966 // histone H3 acetylation // not recorded /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0051090 // regulation of transcription factor activity // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0030914 // STAGA complex // not recorded /// 0030914 // STAGA complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // not recorded /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016986 // transcription initiation factor activity // inferred from electronic annotation 1374410_at BI278611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278611 /DB_XREF=gi:14925629 /DB_XREF=UI-R-CW0-bxn-g-03-0-UI.s1 /CLONE=UI-R-CW0-bxn-g-03-0-UI /FEA=EST /CNT=14 /TID=Rn.17013.1 /TIER=Stack /STK=6 /UG=Rn.17013 /UG_TITLE=ESTs BI278611 1374411_at BF414649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414649 /DB_XREF=gi:11402638 /DB_XREF=UI-R-BJ2-bor-c-06-0-UI.s1 /CLONE=UI-R-BJ2-bor-c-06-0-UI /FEA=EST /CNT=14 /TID=Rn.16310.1 /TIER=Stack /STK=6 /UG=Rn.16310 /UG_TITLE=ESTs BF414649 mitochondrial ribosomal protein L52 Mrpl52 361037 NM_001108375 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation 1374412_at BF557666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557666 /DB_XREF=gi:11667396 /DB_XREF=UI-R-C0-hz-f-09-0-UI.r1 /CLONE=UI-R-C0-hz-f-09-0-UI /FEA=EST /CNT=14 /TID=Rn.13307.1 /TIER=Stack /STK=6 /UG=Rn.13307 /UG_TITLE=ESTs BF557666 F-box and WD repeat domain containing 11 Fbxw11 303024 NM_001106993 0000209 // protein polyubiquitination // not recorded /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded 0019005 // SCF ubiquitin ligase complex // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded 1374413_at BM386522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386522 /DB_XREF=gi:18186575 /DB_XREF=UI-R-CN1-cjg-a-02-0-UI.s1 /CLONE=UI-R-CN1-cjg-a-02-0-UI /FEA=EST /CNT=20 /TID=Rn.12128.1 /TIER=Stack /STK=6 /UG=Rn.12128 /UG_TITLE=ESTs BM386522 ubiquitin-like 3 Ubl3 363869 NM_001015030 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1374414_at AI412962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412962 /DB_XREF=gi:4256466 /DB_XREF=EST241262 /CLONE=RBRED36 /FEA=EST /CNT=17 /TID=Rn.13737.1 /TIER=Stack /STK=6 /UG=Rn.13737 /UG_TITLE=ESTs AI412962 family with sequence similarity 134, member A Fam134a 363252 XM_001057799 /// XM_343592 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1374415_at BF416982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416982 /DB_XREF=gi:11404971 /DB_XREF=UI-R-CN0-bkw-d-06-0-UI.s1 /CLONE=UI-R-CN0-bkw-d-06-0-UI /FEA=EST /CNT=15 /TID=Rn.11830.1 /TIER=Stack /STK=6 /UG=Rn.11830 /UG_TITLE=ESTs BF416982 polymerase (RNA) III (DNA directed) polypeptide E Polr3e 361640 NM_001108503 0006350 // transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation 1374416_at AI169330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169330 /DB_XREF=gi:3705638 /DB_XREF=EST215165 /CLONE=RKIBQ34 /FEA=EST /CNT=14 /TID=Rn.8125.1 /TIER=Stack /STK=6 /UG=Rn.8125 /UG_TITLE=ESTs AI169330 coiled-coil-helix-coiled-coil-helix domain containing 8 Chchd8 499214 NM_001127655 1374417_at BE113111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113111 /DB_XREF=gi:8505216 /DB_XREF=UI-R-BJ1-awb-f-10-0-UI.s1 /CLONE=UI-R-BJ1-awb-f-10-0-UI /FEA=EST /CNT=13 /TID=Rn.22424.1 /TIER=Stack /STK=6 /UG=Rn.22424 /UG_TITLE=ESTs BE113111 1374418_at BF289188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289188 /DB_XREF=gi:11220258 /DB_XREF=EST453779 /CLONE=RGIHC11 /FEA=EST /CNT=13 /TID=Rn.7489.1 /TIER=Stack /STK=6 /UG=Rn.7489 /UG_TITLE=ESTs, Weakly similar to T24971 hypothetical protein T19A6.3 - Caenorhabditis elegans (C.elegans) BF289188 1374419_at AI044435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044435 /DB_XREF=gi:3290786 /DB_XREF=UI-R-C1-js-e-03-0-UI.s1 /CLONE=UI-R-C1-js-e-03-0-UI /FEA=EST /CNT=13 /TID=Rn.18792.1 /TIER=Stack /STK=6 /UG=Rn.18792 /UG_TITLE=ESTs AI044435 adenylate cyclase 9 LOC100362008 100362008 XM_002727705 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation 1374420_at BE117936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117936 /DB_XREF=gi:8510041 /DB_XREF=UI-R-BS1-azm-g-02-0-UI.s1 /CLONE=UI-R-BS1-azm-g-02-0-UI /FEA=EST /CNT=13 /TID=Rn.2352.1 /TIER=Stack /STK=6 /UG=Rn.2352 /UG_TITLE=ESTs, Weakly similar to JC7260 strictosidine synthase (EC 4.3.3.2) homolog 2 - fruit fly (Drosophila melanogaster) (D.melanogaster) BE117936 similar to RIKEN cDNA 2310001A20 RGD1308874 366227 NM_001034003 0009058 // biosynthetic process // inferred from electronic annotation 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0004064 // arylesterase activity // not recorded /// 0016844 // strictosidine synthase activity // inferred from electronic annotation 1374421_at AA850752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850752 /DB_XREF=gi:2938292 /DB_XREF=EST193520 /CLONE=ROVAK38 /FEA=EST /CNT=13 /TID=Rn.7043.1 /TIER=Stack /STK=6 /UG=Rn.7043 /UG_TITLE=ESTs AA850752 bromodomain adjacent to zinc finger domain, 1B Baz1b 368002 NM_001191916 /// XM_001077467 /// XM_347166 0003007 // heart morphogenesis // not recorded /// 0006302 // double-strand break repair // not recorded /// 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006333 // chromatin assembly or disassembly // not recorded /// 0006337 // nucleosome disassembly // not recorded /// 0006338 // chromatin remodeling // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0016572 // histone phosphorylation // not recorded /// 0034725 // DNA replication-dependent nucleosome disassembly // inferred from electronic annotation /// 0034725 // DNA replication-dependent nucleosome disassembly // not recorded /// 0043044 // ATP-dependent chromatin remodeling // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // not recorded /// 0048096 // chromatin-mediated maintenance of transcription // not recorded 0000793 // condensed chromosome // inferred from electronic annotation /// 0000793 // condensed chromosome // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005721 // centromeric heterochromatin // inferred from electronic annotation /// 0005721 // centromeric heterochromatin // not recorded /// 0016585 // chromatin remodeling complex // not recorded /// 0043596 // nuclear replication fork // not recorded /// 0070603 // SWI/SNF-type complex // inferred from electronic annotation /// 0070603 // SWI/SNF-type complex // not recorded 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0030546 // receptor activator activity // inferred from electronic annotation /// 0030546 // receptor activator activity // not recorded /// 0032947 // protein complex scaffold // inferred from electronic annotation /// 0032947 // protein complex scaffold // not recorded /// 0035173 // histone kinase activity // inferred from electronic annotation /// 0035173 // histone kinase activity // not recorded /// 0042393 // histone binding // not recorded /// 0042809 // vitamin D receptor binding // inferred from electronic annotation /// 0042809 // vitamin D receptor binding // not recorded /// 0070577 // histone acetyl-lysine binding // inferred from electronic annotation /// 0070577 // histone acetyl-lysine binding // not recorded 1374422_at BI395803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI395803 /DB_XREF=gi:15091385 /DB_XREF=EST531737 /CLONE=RGICM24 /FEA=EST /CNT=20 /TID=Rn.4138.1 /TIER=Stack /STK=6 /UG=Rn.4138 /UG_TITLE=ESTs BI395803 similar to Erbb2 interacting protein isoform 2 RGD1562952 365661 XR_085744 /// XR_086162 1374423_at BE115866 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115866 /DB_XREF=gi:8508011 /DB_XREF=UI-R-BS1-axx-c-05-0-UI.s1 /CLONE=UI-R-BS1-axx-c-05-0-UI /FEA=EST /CNT=17 /TID=Rn.7301.1 /TIER=Stack /STK=6 /UG=Rn.7301 /UG_TITLE=ESTs, Highly similar to hippocampus abundant gene transcript 1 (Mus musculus) (M.musculus) BE115866 hippocampus abundant gene transcript 1 Hiat1 100134827 NM_001106467 0006810 // transport // inferred from electronic annotation /// 0015904 // tetracycline transport // inferred from electronic annotation /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0015520 // tetracycline:hydrogen antiporter activity // inferred from electronic annotation 1374424_at BE112720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112720 /DB_XREF=gi:8504825 /DB_XREF=UI-R-BJ1-avo-a-09-0-UI.s1 /CLONE=UI-R-BJ1-avo-a-09-0-UI /FEA=EST /CNT=16 /TID=Rn.22448.1 /TIER=Stack /STK=6 /UG=Rn.22448 /UG_TITLE=ESTs, Highly similar to T03842 fission yeast Skb1 protein homolog (H.sapiens) BE112720 protein arginine methyltransferase 5 Prmt5 364382 NM_001108867 0000387 // spliceosomal snRNP assembly // not recorded /// 0018216 // peptidyl-arginine methylation // not recorded /// 0035246 // peptidyl-arginine N-methylation // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008168 // methyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0035243 // protein-arginine omega-N symmetric methyltransferase activity // not recorded /// 0043021 // ribonucleoprotein binding // not recorded 1374425_at BG380534 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380534 /DB_XREF=gi:13305006 /DB_XREF=UI-R-CT0-bty-e-01-0-UI.s1 /CLONE=UI-R-CT0-bty-e-01-0-UI /FEA=EST /CNT=15 /TID=Rn.6875.1 /TIER=Stack /STK=6 /UG=Rn.6875 /UG_TITLE=ESTs, Highly similar to TLE4 RAT TRANSDUCIN-LIKE ENHANCER PROTEIN 4 (R.norvegicus) BG380534 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) Tle1 362533 NM_001173433 /// XM_001066887 /// XM_002726541 /// XM_002726542 /// XM_002726543 /// XM_002726544 /// XM_002726545 /// XM_002729490 /// XM_002729491 /// XM_002729492 /// XM_002729493 /// XM_002729494 /// XM_342851 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded 0003682 // chromatin binding // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation 1374426_at BG670074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670074 /DB_XREF=gi:13892173 /DB_XREF=DRNAAPC03 /CLONE=DRNAAPC03 /FEA=EST /CNT=14 /TID=Rn.40205.1 /TIER=Stack /STK=6 /UG=Rn.40205 /UG_TITLE=ESTs, Moderately similar to UCR6_HUMAN UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN (H.sapiens) BG670074 ubiquinol-cytochrome c reductase binding protein Uqcrb 362897 NM_001127553 0006122 // mitochondrial electron transport, ubiquinol to cytochrome c // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005750 // mitochondrial respiratory chain complex III // inferred from direct assay 0008121 // ubiquinol-cytochrome-c reductase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay 1374427_at AI144986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144986 /DB_XREF=gi:3666785 /DB_XREF=UI-R-BT0-po-f-10-0-UI.s1 /CLONE=UI-R-BT0-po-f-10-0-UI /FEA=EST /CNT=13 /TID=Rn.21031.2 /TIER=Stack /STK=6 /UG=Rn.21031 /LL=80977 /UG_GENE=Syt13 /UG_TITLE=synaptotagmin 13 AI144986 1374428_at BI300933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300933 /DB_XREF=gi:14977213 /DB_XREF=UI-R-CV2-cil-f-06-0-UI.s1 /CLONE=UI-R-CV2-cil-f-06-0-UI /FEA=EST /CNT=13 /TID=Rn.41581.1 /TIER=Stack /STK=6 /UG=Rn.41581 /UG_TITLE=ESTs, Weakly similar to kinesin family member 3C (Rattus norvegicus) (R.norvegicus) BI300933 kinesin family member 3B Kif3b 296284 NM_001106529 0000090 // mitotic anaphase // inferred from expression pattern /// 0000910 // cytokinesis // inferred from expression pattern /// 0007018 // microtubule-based movement // inferred from electronic annotation 0005819 // spindle // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1374429_at AI598401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598401 /DB_XREF=gi:4607449 /DB_XREF=EST250104 /CLONE=REMDQ68 /FEA=EST /CNT=13 /TID=Rn.7368.1 /TIER=Stack /STK=6 /UG=Rn.7368 /UG_TITLE=ESTs, Moderately similar to PIM1 RAT PROTO-ONCOGENE SERINETHREONINE-PROTEIN KINASE PIM-1 (R.norvegicus) AI598401 1374430_at BI274617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274617 /DB_XREF=gi:14885689 /DB_XREF=UI-R-CX0-bws-a-07-0-UI.s1 /CLONE=UI-R-CX0-bws-a-07-0-UI /FEA=EST /CNT=13 /TID=Rn.24630.1 /TIER=Stack /STK=6 /UG=Rn.24630 /UG_TITLE=ESTs, Weakly similar to T19331 hypothetical protein C16C10.10 - Caenorhabditis elegans (C.elegans) BI274617 glyoxalase domain containing 4 Glod4 363644 NM_001014227 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1374431_at BE120644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120644 /DB_XREF=gi:8512749 /DB_XREF=UI-R-CA0-bav-h-07-0-UI.s1 /CLONE=UI-R-CA0-bav-h-07-0-UI /FEA=EST /CNT=12 /TID=Rn.1431.1 /TIER=Stack /STK=6 /UG=Rn.1431 /UG_TITLE=ESTs BE120644 ATPase, H+ transporting, lysosomal V1 subunit A Atp6v1a 685232 NM_001108318 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0042777 // plasma membrane ATP synthesis coupled proton transport // inferred from electronic annotation /// 0046034 // ATP metabolic process // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0016469 // proton-transporting two-sector ATPase complex // inferred from electronic annotation /// 0033178 // proton-transporting two-sector ATPase complex, catalytic domain // inferred from electronic annotation /// 0033180 // proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0046933 // hydrogen ion transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 1374432_at BE118251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118251 /DB_XREF=gi:8510356 /DB_XREF=UI-R-BJ1-azo-e-03-0-UI.s1 /CLONE=UI-R-BJ1-azo-e-03-0-UI /FEA=EST /CNT=12 /TID=Rn.7363.1 /TIER=Stack /STK=6 /UG=Rn.7363 /UG_TITLE=ESTs BE118251 1374433_at BI301532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301532 /DB_XREF=gi:14977812 /DB_XREF=UI-R-DN0-cit-k-16-0-UI.s1 /CLONE=UI-R-DN0-cit-k-16-0-UI /FEA=EST /CNT=12 /TID=Rn.13802.1 /TIER=Stack /STK=6 /UG=Rn.13802 /UG_TITLE=ESTs BI301532 1374434_at BI291703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291703 /DB_XREF=gi:14951504 /DB_XREF=UI-R-DM0-cis-o-04-0-UI.s1 /CLONE=UI-R-DM0-cis-o-04-0-UI /FEA=EST /CNT=12 /TID=Rn.28408.1 /TIER=Stack /STK=6 /UG=Rn.28408 /UG_TITLE=ESTs BI291703 similar to specifically androgen-regulated protein LOC498222 498222 NM_001100788 0005737 // cytoplasm // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1374435_at AA996970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996970 /DB_XREF=gi:4280734 /DB_XREF=UI-R-C0-hk-f-10-0-UI.s1 /CLONE=UI-R-C0-hk-f-10-0-UI /FEA=EST /CNT=12 /TID=Rn.13041.1 /TIER=Stack /STK=6 /UG=Rn.13041 /UG_TITLE=ESTs AA996970 1374436_at AI070122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070122 /DB_XREF=gi:3396373 /DB_XREF=UI-R-Y0-lu-c-12-0-UI.s1 /CLONE=UI-R-Y0-lu-c-12-0-UI /FEA=EST /CNT=17 /TID=Rn.13073.1 /TIER=Stack /STK=6 /UG=Rn.13073 /UG_TITLE=ESTs, Moderately similar to 22A3 MOUSE PROTEIN 22A3 (M.musculus) AI070122 Shwachman-Bodian-Diamond syndrome homolog (human) Sbds 288615 NM_001008289 0001833 // inner cell mass cell proliferation // not recorded /// 0006364 // rRNA processing // not recorded /// 0007612 // learning // not recorded /// 0030282 // bone mineralization // not recorded /// 0030595 // leukocyte chemotaxis // not recorded /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0043148 // mitotic spindle stabilization // not recorded /// 0045727 // positive regulation of translation // inferred from electronic annotation /// 0048539 // bone marrow development // not recorded 0000922 // spindle pole // not recorded /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // not recorded /// 0019843 // rRNA binding // not recorded 1374437_at BF419336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419336 /DB_XREF=gi:11407325 /DB_XREF=UI-R-BJ2-bqq-d-08-0-UI.s1 /CLONE=UI-R-BJ2-bqq-d-08-0-UI /FEA=EST /CNT=15 /TID=Rn.16303.1 /TIER=Stack /STK=6 /UG=Rn.16303 /UG_TITLE=ESTs, Moderately similar to SYN_HUMAN ASPARAGINYL-TRNA SYNTHETASE, CYTOPLASMIC (H.sapiens) BF419336 asparaginyl-tRNA synthetase Nars 291556 NM_001025635 /// NM_001142949 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006421 // asparaginyl-tRNA aminoacylation // inferred from electronic annotation /// 0006422 // aspartyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004815 // aspartate-tRNA ligase activity // inferred from electronic annotation /// 0004816 // asparagine-tRNA ligase activity // inferred from electronic annotation /// 0004816 // asparagine-tRNA ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1374438_at AI103962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103962 /DB_XREF=gi:3708423 /DB_XREF=EST213251 /CLONE=RHEBV64 /FEA=EST /CNT=14 /TID=Rn.22342.1 /TIER=Stack /STK=6 /UG=Rn.22342 /UG_TITLE=ESTs AI103962 1374439_at BI295564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295564 /DB_XREF=gi:14959138 /DB_XREF=UI-R-DK0-cev-h-04-0-UI.s1 /CLONE=UI-R-DK0-cev-h-04-0-UI /FEA=EST /CNT=14 /TID=Rn.22339.2 /TIER=Stack /STK=6 /UG=Rn.22339 /UG_TITLE=ESTs, Moderately similar to T08721 hypothetical protein DKFZp566C243.1 (H.sapiens) BI295564 Yip1 domain family, member 3 Yipf3 301245 NM_001007801 0030154 // cell differentiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030133 // transport vesicle // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 1374440_at BE098506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098506 /DB_XREF=gi:8490370 /DB_XREF=UI-R-BJ1-atc-g-05-0-UI.s1 /CLONE=UI-R-BJ1-atc-g-05-0-UI /FEA=EST /CNT=14 /TID=Rn.6316.1 /TIER=Stack /STK=6 /UG=Rn.6316 /UG_TITLE=ESTs, Weakly similar to DHI1 RAT CORTICOSTEROID 11-BETA-DEHYDROGENASE, ISOZYME 1 (R.norvegicus) BE098506 hydroxysteroid (17-beta) dehydrogenase 11 Hsd17b11 289456 NM_001004209 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006710 // androgen catabolic process // inferred from electronic annotation /// 0006710 // androgen catabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016229 // steroid dehydrogenase activity // inferred from electronic annotation /// 0016229 // steroid dehydrogenase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1374441_at AI180035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180035 /DB_XREF=gi:3730673 /DB_XREF=EST223768 /CLONE=RSPCP17 /FEA=EST /CNT=13 /TID=Rn.3656.1 /TIER=Stack /STK=6 /UG=Rn.3656 /UG_TITLE=ESTs AI180035 SPRY domain containing 4 Spryd4 288772 NM_001037765 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1374442_at AI227831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227831 /DB_XREF=gi:3811718 /DB_XREF=EST224526 /CLONE=RBRCM30 /FEA=EST /CNT=13 /TID=Rn.24886.1 /TIER=Stack /STK=6 /UG=Rn.24886 /UG_TITLE=ESTs, Weakly similar to SPLICING FACTOR, ARGININESERINE-RICH 5 (R.norvegicus) AI227831 splicing factor, arginine/serine-rich 9 Sfrs9 288701 NM_001009255 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1374443_at AW915478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915478 /DB_XREF=gi:8081175 /DB_XREF=EST346782 /CLONE=RGICV82 /FEA=EST /CNT=13 /TID=Rn.22728.1 /TIER=Stack /STK=6 /UG=Rn.22728 /UG_TITLE=ESTs, Moderately similar to S63540 protein DS 1, 24K (H.sapiens) AW915478 immature colon carcinoma transcript 1 Ict1 303673 NM_001191656 /// XM_001081688 /// XM_221110 0006415 // translational termination // inferred from electronic annotation /// 0070126 // mitochondrial translational termination // not recorded 0005739 // mitochondrion // not recorded /// 0005762 // mitochondrial large ribosomal subunit // not recorded 0003747 // translation release factor activity // inferred from electronic annotation /// 0004045 // aminoacyl-tRNA hydrolase activity // not recorded /// 0016150 // translation release factor activity, codon nonspecific // not recorded 1374444_at BI288540 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288540 /DB_XREF=gi:14945227 /DB_XREF=UI-R-DK0-cdg-b-02-0-UI.s1 /CLONE=UI-R-DK0-cdg-b-02-0-UI /FEA=EST /CNT=13 /TID=Rn.26773.1 /TIER=Stack /STK=6 /UG=Rn.26773 /UG_TITLE=ESTs BI288540 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation 1374445_at BM386619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386619 /DB_XREF=gi:18186672 /DB_XREF=UI-R-CN1-cjg-d-03-0-UI.s1 /CLONE=UI-R-CN1-cjg-d-03-0-UI /FEA=EST /CNT=12 /TID=Rn.45374.1 /TIER=Stack /STK=6 /UG=Rn.45374 /UG_TITLE=ESTs BM386619 G protein-coupled receptor 162 Gpr162 362436 NM_001108646 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1374446_at AI179464 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179464 /DB_XREF=gi:3730102 /DB_XREF=EST223177 /CLONE=RSPCH71 /FEA=EST /CNT=12 /TID=Rn.24217.1 /TIER=Stack /STK=6 /UG=Rn.24217 /UG_TITLE=ESTs AI179464 TCDD-inducible poly(ADP-ribose) polymerase Tiparp 310467 NM_001107679 0001570 // vasculogenesis // not recorded /// 0001822 // kidney development // not recorded /// 0006471 // protein ADP-ribosylation // not recorded /// 0006807 // nitrogen compound metabolic process // not recorded /// 0008209 // androgen metabolic process // not recorded /// 0008210 // estrogen metabolic process // not recorded /// 0008585 // female gonad development // not recorded /// 0009791 // post-embryonic development // not recorded /// 0030097 // hemopoiesis // not recorded /// 0044236 // multicellular organismal metabolic process // not recorded /// 0048008 // platelet-derived growth factor receptor signaling pathway // not recorded /// 0048705 // skeletal system morphogenesis // not recorded /// 0048745 // smooth muscle tissue development // not recorded /// 0060021 // palate development // not recorded /// 0060325 // face morphogenesis // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1374447_at BG672082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672082 /DB_XREF=gi:13894181 /DB_XREF=DRNCBG08 /CLONE=DRNCBG08 /FEA=EST /CNT=12 /TID=Rn.7604.2 /TIER=Stack /STK=6 /UG=Rn.7604 /UG_TITLE=ESTs, Highly similar to FAFX MOUSE PROBABLE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAF-X (M.musculus) BG672082 ubiquitin specific peptidase 9, X-linked Usp9x 363445 NM_001135893 /// NM_001135923 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0016579 // protein deubiquitination // not recorded /// 0030509 // BMP signaling pathway // not recorded 0005737 // cytoplasm // not recorded 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0070410 // co-SMAD binding // not recorded 1374448_at AW523759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523759 /DB_XREF=gi:7166144 /DB_XREF=UI-R-BO0-aih-g-07-0-UI.s1 /CLONE=UI-R-BO0-aih-g-07-0-UI /FEA=EST /CNT=12 /TID=Rn.7365.1 /TIER=Stack /STK=6 /UG=Rn.7365 /UG_TITLE=ESTs AW523759 reversion-inducing-cysteine-rich protein with kazal motifs Reck 313488 NM_001107954 0001955 // blood vessel maturation // not recorded /// 0010951 // negative regulation of endopeptidase activity // not recorded /// 0030198 // extracellular matrix organization // not recorded 0000300 // peripheral to membrane of membrane fraction // not recorded 0004866 // endopeptidase inhibitor activity // not recorded 1374449_at BF417638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417638 /DB_XREF=gi:11405627 /DB_XREF=UI-R-CN0-blq-d-12-0-UI.s1 /CLONE=UI-R-CN0-blq-d-12-0-UI /FEA=EST /CNT=11 /TID=Rn.3246.1 /TIER=Stack /STK=6 /UG=Rn.3246 /UG_TITLE=ESTs, Highly similar to C8 (M.musculus) BF417638 cell division cycle associated 3 Cdca3 297594 NM_001007648 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 1374450_at BF406124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406124 /DB_XREF=gi:11394099 /DB_XREF=UI-R-CA1-bjf-a-09-0-UI.s1 /CLONE=UI-R-CA1-bjf-a-09-0-UI /FEA=EST /CNT=11 /TID=Rn.7797.1 /TIER=Stack /STK=6 /UG=Rn.7797 /UG_TITLE=ESTs BF406124 INO80 complex subunit B Ino80b 500225 NM_001048233 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374451_at AI577156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577156 /DB_XREF=gi:4561532 /DB_XREF=UI-R-AD0-wd-b-10-0-UI.s1 /CLONE=UI-R-AD0-wd-b-10-0-UI /FEA=EST /CNT=11 /TID=Rn.36496.2 /TIER=Stack /STK=6 /UG=Rn.36496 /LL=64637 /UG_GENE=Hand2 /UG_TITLE=dHand protein AI577156 Heart and neural crest derivatives expressed 2 Hand2 64637 NM_022696 0001525 // angiogenesis // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001947 // heart looping // inferred from electronic annotation /// 0001947 // heart looping // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007512 // adult heart development // inferred from electronic annotation /// 0007512 // adult heart development // not recorded /// 0014032 // neural crest cell development // inferred from electronic annotation /// 0014032 // neural crest cell development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003713 // transcription coactivator activity // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0033613 // transcription activator binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // traceable author statement /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // traceable author statement /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0070888 // E-box binding // inferred from electronic annotation 1374452_at BF399743 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399743 /DB_XREF=gi:11384753 /DB_XREF=UI-R-CA0-bhy-a-06-0-UI.s2 /CLONE=UI-R-CA0-bhy-a-06-0-UI /FEA=EST /CNT=11 /TID=Rn.20981.1 /TIER=Stack /STK=6 /UG=Rn.20981 /UG_TITLE=ESTs, Highly similar to CN9A MOUSE HIGH-AFFINITY CGMP-SPECIFIC 3,5-CYCLIC PHOSPHODIESTERASE 9A (M.musculus) BF399743 phosphodiesterase 9A Pde9a 191569 NM_138543 0007165 // signal transduction // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0019934 // cGMP-mediated signaling // inferred from expression pattern 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0043204 // perikaryon // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047555 // 3',5'-cyclic-GMP phosphodiesterase activity // inferred from direct assay /// 0047555 // 3',5'-cyclic-GMP phosphodiesterase activity // not recorded /// 0047555 // 3',5'-cyclic-GMP phosphodiesterase activity // inferred from electronic annotation 1374453_at AW917568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917568 /DB_XREF=gi:8083322 /DB_XREF=EST348872 /CLONE=RGIEF42 /FEA=EST /CNT=11 /TID=Rn.12980.1 /TIER=Stack /STK=6 /UG=Rn.12980 /UG_TITLE=ESTs AW917568 1374454_at BM388557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388557 /DB_XREF=gi:18188610 /DB_XREF=UI-R-DZ0-ckm-i-12-0-UI.s1 /CLONE=UI-R-DZ0-ckm-i-12-0-UI /FEA=EST /CNT=11 /TID=Rn.43517.1 /TIER=Stack /STK=6 /UG=Rn.43517 /UG_TITLE=ESTs BM388557 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 Pcmtd2 311726 NM_001107810 0006464 // protein modification process // inferred from electronic annotation 0004719 // protein-L-isoaspartate (D-aspartate) O-methyltransferase activity // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1374455_at AI599343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599343 /DB_XREF=gi:4608391 /DB_XREF=EST251046 /CLONE=REMEQ07 /FEA=EST /CNT=11 /TID=Rn.13652.1 /TIER=Stack /STK=6 /UG=Rn.13652 /UG_TITLE=ESTs AI599343 AYP1 protein-like LOC100365566 100365566 XM_002725773 1374456_at AI179562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179562 /DB_XREF=gi:3730200 /DB_XREF=EST223283 /CLONE=RSPCI95 /FEA=EST /CNT=11 /TID=Rn.4141.1 /TIER=Stack /STK=6 /UG=Rn.4141 /UG_TITLE=ESTs AI179562 similar to Protein disulfide-isomerase TXNDC10 precursor (Thioredoxin domain-containing protein 10) LOC682967 682967 XM_001063895 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation 1374457_at AI180194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180194 /DB_XREF=gi:3730832 /DB_XREF=EST223935 /CLONE=RSPCR72 /FEA=EST /CNT=11 /TID=Rn.31467.1 /TIER=Stack /STK=6 /UG=Rn.31467 /UG_TITLE=ESTs, Highly similar to JC5180 serine C-palmitoyltransferase (M.musculus) AI180194 serine palmitoyltransferase, long chain base subunit 2 Sptlc2 366697 NM_001037097 0006686 // sphingomyelin biosynthetic process // inferred from electronic annotation /// 0006686 // sphingomyelin biosynthetic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0046511 // sphinganine biosynthetic process // inferred from electronic annotation /// 0046511 // sphinganine biosynthetic process // not recorded /// 0046512 // sphingosine biosynthetic process // inferred from electronic annotation /// 0046512 // sphingosine biosynthetic process // not recorded /// 0046513 // ceramide biosynthetic process // not recorded /// 0046513 // ceramide biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0017059 // serine C-palmitoyltransferase complex // inferred from electronic annotation /// 0017059 // serine C-palmitoyltransferase complex // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004758 // serine C-palmitoyltransferase activity // inferred from electronic annotation /// 0004758 // serine C-palmitoyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1374458_at AI600031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600031 /DB_XREF=gi:4609079 /DB_XREF=EST251734 /CLONE=REMDO65 /FEA=EST /CNT=11 /TID=Rn.17432.1 /TIER=Stack /STK=6 /UG=Rn.17432 /UG_TITLE=ESTs AI600031 1374459_at AI178448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178448 /DB_XREF=gi:3729086 /DB_XREF=EST222121 /CLONE=RPLCR17 /FEA=EST /CNT=11 /TID=Rn.975.1 /TIER=Stack /STK=6 /UG=Rn.975 /UG_TITLE=ESTs AI178448 asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae) Alg2 313231 NM_001100710 0006488 // dolichol-linked oligosaccharide biosynthetic process // inferred from electronic annotation /// 0006488 // dolichol-linked oligosaccharide biosynthetic process // not recorded /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0033577 // protein glycosylation in endoplasmic reticulum // inferred from electronic annotation /// 0033577 // protein glycosylation in endoplasmic reticulum // not recorded /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0000033 // alpha-1,3-mannosyltransferase activity // inferred from electronic annotation /// 0000033 // alpha-1,3-mannosyltransferase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0043495 // protein anchor // inferred from electronic annotation /// 0043495 // protein anchor // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded 1374460_at BM386508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386508 /DB_XREF=gi:18186561 /DB_XREF=UI-R-CN1-cjg-m-13-0-UI.s1 /CLONE=UI-R-CN1-cjg-m-13-0-UI /FEA=EST /CNT=11 /TID=Rn.1921.2 /TIER=Stack /STK=6 /UG=Rn.1921 /UG_TITLE=ESTs, Highly similar to COP9 complex subunit 7a (M.musculus) BM386508 COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis) Cops7a 312710 NM_001047098 /// NM_001164091 1374461_at AA893686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893686 /DB_XREF=gi:3020565 /DB_XREF=EST197489 /CLONE=RPLAI43 /FEA=EST /CNT=11 /TID=Rn.24895.1 /TIER=Stack /STK=6 /UG=Rn.24895 /UG_TITLE=ESTs AA893686 zinc finger, DHHC-type containing 4 Zdhhc4 304291 NM_001013123 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374462_at AA850935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850935 /DB_XREF=gi:4131900 /DB_XREF=EST193703 /CLONE=ROVAO60 /FEA=EST /CNT=24 /TID=Rn.36855.1 /TIER=Stack /STK=6 /UG=Rn.36855 /UG_TITLE=ESTs, Highly similar to JC6161 kinesin-associated protein KAP3 splice form A - mouse (M.musculus) AA850935 kinesin-associated protein 3 Kifap3 289168 NM_001105964 0008104 // protein localization // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0046587 // positive regulation of calcium-dependent cell-cell adhesion // not recorded 0005871 // kinesin complex // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019894 // kinesin binding // inferred from electronic annotation 1374463_at AI172068 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172068 /DB_XREF=gi:3712108 /DB_XREF=EST218063 /CLONE=RMUBU51 /FEA=EST /CNT=20 /TID=Rn.21434.1 /TIER=Stack /STK=6 /UG=Rn.21434 /UG_TITLE=ESTs AI172068 1374464_at BI287875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287875 /DB_XREF=gi:14943910 /DB_XREF=UI-R-CW0s-ccm-c-04-0-UI.s1 /CLONE=UI-R-CW0s-ccm-c-04-0-UI /FEA=EST /CNT=15 /TID=Rn.24822.1 /TIER=Stack /STK=6 /UG=Rn.24822 /UG_TITLE=ESTs, Highly similar to TFG protein (M.musculus) BI287875 Trk-fused gene Tfg 360709 NM_001012144 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1374465_at AI237098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237098 /DB_XREF=gi:3830604 /DB_XREF=EST233660 /CLONE=ROVDO63 /FEA=EST /CNT=15 /TID=Rn.8375.1 /TIER=Stack /STK=6 /UG=Rn.8375 /UG_TITLE=ESTs, Highly similar to ubiquitously expressed transcript (Mus musculus) (M.musculus) AI237098 ubiquitously expressed transcript Uxt 299313 NM_001006982 0000226 // microtubule cytoskeleton organization // not recorded /// 0000226 // microtubule cytoskeleton organization // inferred from sequence or structural similarity /// 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0006457 // protein folding // inferred from electronic annotation /// 0051297 // centrosome organization // not recorded /// 0051297 // centrosome organization // inferred from sequence or structural similarity /// 0051297 // centrosome organization // inferred from electronic annotation 0000930 // gamma-tubulin complex // not recorded /// 0000930 // gamma-tubulin complex // inferred from sequence or structural similarity /// 0000930 // gamma-tubulin complex // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005813 // centrosome // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // not recorded /// 0005856 // cytoskeleton // inferred from sequence or structural similarity /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016272 // prefoldin complex // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // not recorded /// 0048487 // beta-tubulin binding // inferred from sequence or structural similarity /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded /// 0051082 // unfolded protein binding // inferred from electronic annotation 1374466_at AI715484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715484 /DB_XREF=gi:5032737 /DB_XREF=UI-R-Y0-abq-b-05-0-UI.s1 /CLONE=UI-R-Y0-abq-b-05-0-UI /FEA=EST /CNT=14 /TID=Rn.34966.1 /TIER=Stack /STK=6 /UG=Rn.34966 /UG_TITLE=ESTs AI715484 1374467_at BM389034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389034 /DB_XREF=gi:18189087 /DB_XREF=UI-R-DZ0-cko-d-13-0-UI.s1 /CLONE=UI-R-DZ0-cko-d-13-0-UI /FEA=EST /CNT=14 /TID=Rn.908.2 /TIER=Stack /STK=6 /UG=Rn.908 /LL=81765 /UG_GENE=Rpl13 /UG_TITLE=ribosomal protein L13 BM389034 TNF receptor-associated protein 1 Trap1 287069 NM_001039001 0006457 // protein folding // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0034599 // cellular response to oxidative stress // inferred from electronic annotation /// 0034599 // cellular response to oxidative stress // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1374468_at AI236590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236590 /DB_XREF=gi:3830096 /DB_XREF=EST233152 /CLONE=ROVDI08 /FEA=EST /CNT=12 /TID=Rn.37341.1 /TIER=Stack /STK=6 /UG=Rn.37341 /UG_TITLE=ESTs AI236590 myeloid differentiation primary response gene 88 Myd88 301059 NM_198130 0002238 // response to molecule of fungal origin // inferred from electronic annotation /// 0002238 // response to molecule of fungal origin // not recorded /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // inferred from electronic annotation /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded /// 0007254 // JNK cascade // inferred from mutant phenotype /// 0008063 // Toll signaling pathway // inferred from direct assay /// 0009615 // response to virus // inferred from electronic annotation /// 0009615 // response to virus // not recorded /// 0016064 // immunoglobulin mediated immune response // inferred from electronic annotation /// 0016064 // immunoglobulin mediated immune response // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from mutant phenotype /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0031663 // lipopolysaccharide-mediated signaling pathway // not recorded /// 0032494 // response to peptidoglycan // inferred from electronic annotation /// 0032494 // response to peptidoglycan // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0032740 // positive regulation of interleukin-17 production // inferred from electronic annotation /// 0032740 // positive regulation of interleukin-17 production // not recorded /// 0032747 // positive regulation of interleukin-23 production // inferred from electronic annotation /// 0032747 // positive regulation of interleukin-23 production // not recorded /// 0032755 // positive regulation of interleukin-6 production // inferred from electronic annotation /// 0032755 // positive regulation of interleukin-6 production // not recorded /// 0032760 // positive regulation of tumor necrosis factor production // inferred from electronic annotation /// 0032760 // positive regulation of tumor necrosis factor production // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // traceable author statement /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0044130 // negative regulation of growth of symbiont in host // inferred from electronic annotation /// 0044130 // negative regulation of growth of symbiont in host // not recorded /// 0045080 // positive regulation of chemokine biosynthetic process // inferred from electronic annotation /// 0045080 // positive regulation of chemokine biosynthetic process // not recorded /// 0045087 // innate immune response // inferred from electronic annotation /// 0045351 // type I interferon biosynthetic process // inferred from electronic annotation /// 0045351 // type I interferon biosynthetic process // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046330 // positive regulation of JNK cascade // inferred from electronic annotation /// 0046330 // positive regulation of JNK cascade // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0050671 // positive regulation of lymphocyte proliferation // inferred from electronic annotation /// 0050671 // positive regulation of lymphocyte proliferation // not recorded /// 0050727 // regulation of inflammatory response // inferred from electronic annotation /// 0050727 // regulation of inflammatory response // not recorded /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0070555 // response to interleukin-1 // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0031224 // intrinsic to membrane // inferred from electronic annotation 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005121 // Toll binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1374469_at BG372375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372375 /DB_XREF=gi:13268912 /DB_XREF=UI-R-CV1-bsc-a-02-0-UI.s1 /CLONE=UI-R-CV1-bsc-a-02-0-UI /FEA=EST /CNT=12 /TID=Rn.22305.1 /TIER=Stack /STK=6 /UG=Rn.22305 /UG_TITLE=ESTs BG372375 1374470_at AI102264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102264 /DB_XREF=gi:3707065 /DB_XREF=EST211553 /CLONE=RBRCB32 /FEA=EST /CNT=12 /TID=Rn.2161.1 /TIER=Stack /STK=6 /UG=Rn.2161 /UG_TITLE=ESTs, Weakly similar to A47363 RNA helicase A (H.sapiens) AI102264 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 Dhx57 366532 NM_001191907 /// XM_001062787 /// XM_002726672 /// XM_002729595 /// XM_345625 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1374471_at BI299637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299637 /DB_XREF=gi:14975917 /DB_XREF=UI-R-CV2-chj-e-07-0-UI.s1 /CLONE=UI-R-CV2-chj-e-07-0-UI /FEA=EST /CNT=11 /TID=Rn.7975.1 /TIER=Stack /STK=6 /UG=Rn.7975 /UG_TITLE=ESTs, Weakly similar to CNE6_MOUSE COPINE VI (NEURONAL-COPINE) (N-COPINE) (M.musculus) BI299637 similar to copine II LOC498972 498972 XM_002725371 /// XM_574259 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1374472_at AI710526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI710526 /DB_XREF=gi:5000302 /DB_XREF=UI-R-AG1-aal-b-04-0-UI.s1 /CLONE=UI-R-AG1-aal-b-04-0-UI /FEA=EST /CNT=11 /TID=Rn.19.1 /TIER=Stack /STK=6 /UG=Rn.19 /UG_TITLE=ESTs, Weakly similar to 2121426A modifier of rudimentary-p1 gene (D.melanogaster) AI710526 vacuolar protein sorting 37 homolog A (S. cerevisiae) Vps37a 290775 NM_001024867 1374473_at BI282910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282910 /DB_XREF=gi:14934144 /DB_XREF=UI-R-CW0s-ccc-g-08-0-UI.s1 /CLONE=UI-R-CW0s-ccc-g-08-0-UI /FEA=EST /CNT=11 /TID=Rn.23619.1 /TIER=Stack /STK=6 /UG=Rn.23619 /UG_TITLE=ESTs BI282910 protein phosphatase 1, regulatory (inhibitor) subunit 15b Ppp1r15b 304799 NM_001107175 0006950 // response to stress // not recorded /// 0006979 // response to oxidative stress // not recorded /// 0006983 // ER overload response // not recorded /// 0016311 // dephosphorylation // not recorded /// 0042542 // response to hydrogen peroxide // not recorded 0000164 // protein phosphatase type 1 complex // not recorded 0004722 // protein serine/threonine phosphatase activity // not recorded 1374474_at BE099085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099085 /DB_XREF=gi:8490961 /DB_XREF=UI-R-BJ1-ati-b-06-0-UI.s1 /CLONE=UI-R-BJ1-ati-b-06-0-UI /FEA=EST /CNT=11 /TID=Rn.11746.1 /TIER=Stack /STK=6 /UG=Rn.11746 /UG_TITLE=ESTs BE099085 copine VIII Cpne8 362988 NM_001108750 1374475_at AI105131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105131 /DB_XREF=gi:3709289 /DB_XREF=EST214420 /CLONE=RKIBG02 /FEA=EST /CNT=11 /TID=Rn.40145.1 /TIER=Stack /STK=6 /UG=Rn.40145 /UG_TITLE=ESTs, Weakly similar to HPS1_HUMAN PROTEIN PHPS1 (H.sapiens) AI105131 abhydrolase domain containing 1 Abhd1 313917 NM_001008520 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1374476_at AA866267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866267 /DB_XREF=gi:4229154 /DB_XREF=UI-R-A0-bg-a-09-0-UI.s1 /CLONE=UI-R-A0-bg-a-09-0-UI /FEA=EST /CNT=11 /TID=Rn.40468.1 /TIER=Stack /STK=6 /UG=Rn.40468 /UG_TITLE=ESTs AA866267 1374477_at BE113700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113700 /DB_XREF=gi:8505805 /DB_XREF=UI-R-BJ1-aws-d-08-0-UI.s1 /CLONE=UI-R-BJ1-aws-d-08-0-UI /FEA=EST /CNT=11 /TID=Rn.7407.1 /TIER=Stack /STK=6 /UG=Rn.7407 /UG_TITLE=ESTs, Weakly similar to PMX1 MOUSE PAIRED MESODERM HOMEOBOX PROTEIN 1 (R.norvegicus) BE113700 paired related homeobox 2 Prrx2 113931 NM_001105739 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0042474 // middle ear morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045880 // positive regulation of smoothened signaling pathway // not recorded /// 0048701 // embryonic cranial skeleton morphogenesis // not recorded /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048844 // artery morphogenesis // not recorded /// 0051216 // cartilage development // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1374478_at AA819329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819329 /DB_XREF=gi:4228467 /DB_XREF=UI-R-A0-bc-c-03-0-UI.s1 /CLONE=UI-R-A0-bc-c-03-0-UI /FEA=EST /CNT=10 /TID=Rn.1992.1 /TIER=Stack /STK=6 /UG=Rn.1992 /UG_TITLE=ESTs AA819329 similar to RIKEN cDNA 2610528J11 RGD1305347 362576 NM_001108674 1374479_at BM390240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390240 /DB_XREF=gi:18190293 /DB_XREF=UI-R-CN1-cjq-k-03-0-UI.s1 /CLONE=UI-R-CN1-cjq-k-03-0-UI /FEA=EST /CNT=10 /TID=Rn.18319.1 /TIER=Stack /STK=6 /UG=Rn.18319 /UG_TITLE=ESTs BM390240 INO80 complex subunit C Ino80c 291737 NM_001017446 0071339 // MLL1 complex // not recorded /// 0071339 // MLL1 complex // inferred from sequence or structural similarity 1374480_at BE107255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107255 /DB_XREF=gi:8499360 /DB_XREF=UI-R-BS1-ayr-f-09-0-UI.s1 /CLONE=UI-R-BS1-ayr-f-09-0-UI /FEA=EST /CNT=10 /TID=Rn.28222.1 /TIER=Stack /STK=6 /UG=Rn.28222 /UG_TITLE=ESTs BE107255 dishevelled associated activator of morphogenesis 1 Daam1 314212 NM_001108030 0016043 // cellular component organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from electronic annotation 1374481_at AA946502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946502 /DB_XREF=gi:3106418 /DB_XREF=EST202001 /CLONE=ROVAR88 /FEA=EST /CNT=10 /TID=Rn.8060.1 /TIER=Stack /STK=6 /UG=Rn.8060 /UG_TITLE=ESTs AA946502 cappuccino homolog (mouse) Cno 364183 NM_001100766 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0016044 // cellular membrane organization // not recorded /// 0032438 // melanosome organization // inferred from electronic annotation /// 0032438 // melanosome organization // not recorded 0005515 // protein binding // not recorded 1374482_at AW142993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142993 /DB_XREF=gi:6162892 /DB_XREF=EST293285 /CLONE=RGIBB18 /FEA=EST /CNT=10 /TID=Rn.13683.1 /TIER=Stack /STK=6 /UG=Rn.13683 /UG_TITLE=ESTs AW142993 CTP synthase II Ctps2 619580 NM_001034998 0006221 // pyrimidine nucleotide biosynthetic process // inferred from electronic annotation /// 0006541 // glutamine metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003883 // CTP synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1374483_at BE098873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098873 /DB_XREF=gi:8490744 /DB_XREF=UI-R-BJ1-ate-g-11-0-UI.s1 /CLONE=UI-R-BJ1-ate-g-11-0-UI /FEA=EST /CNT=10 /TID=Rn.37600.1 /TIER=Stack /STK=6 /UG=Rn.37600 /UG_TITLE=ESTs BE098873 1374484_at AI230318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230318 /DB_XREF=gi:3814205 /DB_XREF=EST227013 /CLONE=REMCU95 /FEA=EST /CNT=10 /TID=Rn.13663.1 /TIER=Stack /STK=6 /UG=Rn.13663 /UG_TITLE=ESTs, Weakly similar to T30924 hypothetical protein D1007.5 - Caenorhabditis elegans (C.elegans) AI230318 transmembrane protein 39a Tmem39a 288092 NM_001013865 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1374485_at AI137762 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137762 /DB_XREF=gi:3638539 /DB_XREF=UI-R-E1-ft-c-05-0-UI.s1 /CLONE=UI-R-E1-ft-c-05-0-UI /FEA=EST /CNT=10 /TID=Rn.3408.1 /TIER=Stack /STK=6 /UG=Rn.3408 /UG_TITLE=ESTs AI137762 1374486_at AI412491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412491 /DB_XREF=gi:4255995 /DB_XREF=EST240790 /CLONE=RBRDT13 /FEA=EST /CNT=10 /TID=Rn.8279.1 /TIER=Stack /STK=6 /UG=Rn.8279 /UG_TITLE=ESTs AI412491 Similar to hypothetical protein FLJ32884 RGD1309453 310689 NM_001107701 1374487_at AI169579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169579 /DB_XREF=gi:3709619 /DB_XREF=EST215460 /CLONE=RKIBU79 /FEA=EST /CNT=10 /TID=Rn.8196.1 /TIER=Stack /STK=6 /UG=Rn.8196 /UG_TITLE=ESTs AI169579 family with sequence similarity 96, member A Fam96a 300797 NM_001008327 1374488_at AI175700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175700 /DB_XREF=gi:3726338 /DB_XREF=EST219261 /CLONE=ROVBD93 /FEA=EST /CNT=10 /TID=Rn.21286.1 /TIER=Stack /STK=6 /UG=Rn.21286 /UG_TITLE=ESTs, Weakly similar to T43471 hypothetical protein DKFZp434C0328.1 (H.sapiens) AI175700 GRAM domain containing 1B Gramd1b 300644 NM_001191616 /// XM_001059472 /// XM_217113 1374489_at BF282573 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282573 /DB_XREF=gi:11213643 /DB_XREF=EST447164 /CLONE=RGIDQ28 /FEA=EST /CNT=10 /TID=Rn.3595.1 /TIER=Stack /STK=6 /UG=Rn.3595 /UG_TITLE=ESTs BF282573 GTP binding protein 2 Gtpbp2 363195 NM_001013225 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1374490_at AI177845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177845 /DB_XREF=gi:3728483 /DB_XREF=EST221492 /CLONE=RPLCH29 /FEA=EST /CNT=10 /TID=Rn.24199.1 /TIER=Stack /STK=6 /UG=Rn.24199 /UG_TITLE=ESTs AI177845 thyroid hormone receptor interactor 12 Trip12 316575 NM_001031659 0006464 // protein modification process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0046966 // thyroid hormone receptor binding // not recorded 1374491_at AI408279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408279 /DB_XREF=gi:4251783 /DB_XREF=EST236569 /CLONE=ROVET92 /FEA=EST /CNT=10 /TID=Rn.8312.1 /TIER=Stack /STK=6 /UG=Rn.8312 /UG_TITLE=ESTs, Weakly similar to plasmolipin (Rattus norvegicus) (R.norvegicus) AI408279 CKLF-like MARVEL transmembrane domain containing 8 Cmtm8 301045 NM_198754 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1374492_at AI102666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102666 /DB_XREF=gi:3707381 /DB_XREF=EST211955 /CLONE=REMBQ77 /FEA=EST /CNT=10 /TID=Rn.234.1 /TIER=Stack /STK=6 /UG=Rn.234 /UG_TITLE=ESTs AI102666 1374493_at H35017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H35017 /DB_XREF=gi:980434 /DB_XREF=EST108538 /CLONE=RPNAA82 /FEA=EST /CNT=10 /TID=Rn.19441.1 /TIER=Stack /STK=6 /UG=Rn.19441 /UG_TITLE=ESTs H35017 1374494_at AI137375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137375 /DB_XREF=gi:3638152 /DB_XREF=UI-R-C2p-og-e-10-0-UI.s1 /CLONE=UI-R-C2p-og-e-10-0-UI /FEA=EST /CNT=10 /TID=Rn.8270.1 /TIER=Stack /STK=6 /UG=Rn.8270 /UG_TITLE=ESTs AI137375 1374495_at BM388121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388121 /DB_XREF=gi:18188174 /DB_XREF=UI-R-DM1-cjz-l-07-0-UI.s1 /CLONE=UI-R-DM1-cjz-l-07-0-UI /FEA=EST /CNT=10 /TID=Rn.2120.1 /TIER=Stack /STK=6 /UG=Rn.2120 /UG_TITLE=ESTs BM388121 LPS-responsive vesicle trafficking, beach and anchor containing Lrba 361975 NM_001108555 0005764 // lysosome // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005802 // trans-Golgi network // not recorded /// 0005886 // plasma membrane // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374496_at BG380570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380570 /DB_XREF=gi:13305042 /DB_XREF=UI-R-CT0-bty-h-04-0-UI.s1 /CLONE=UI-R-CT0-bty-h-04-0-UI /FEA=EST /CNT=10 /TID=Rn.25045.1 /TIER=Stack /STK=6 /UG=Rn.25045 /UG_TITLE=ESTs BG380570 similar to RIKEN cDNA 1200009O22; EST AI316813 RGD1310827 362364 NM_001034010 0006954 // inflammatory response // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1374497_at AI102943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102943 /DB_XREF=gi:3707577 /DB_XREF=EST212232 /CLONE=REMBV23 /FEA=EST /CNT=10 /TID=Rn.4202.1 /TIER=Stack /STK=6 /UG=Rn.4202 /UG_TITLE=ESTs AI102943 nicalin homolog (zebrafish) Ncln 314648 NM_001014082 0006508 // proteolysis // inferred from electronic annotation /// 0009966 // regulation of signal transduction // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation 1374498_at AW916866 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916866 /DB_XREF=gi:8082509 /DB_XREF=EST348079 /CLONE=RGIDU64 /FEA=EST /CNT=10 /TID=Rn.19070.1 /TIER=Stack /STK=6 /UG=Rn.19070 /UG_TITLE=ESTs AW916866 1374499_at BM383402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383402 /DB_XREF=gi:18183455 /DB_XREF=UI-R-DM1-ckb-b-18-0-UI.s1 /CLONE=UI-R-DM1-ckb-b-18-0-UI /FEA=EST /CNT=19 /TID=Rn.8964.1 /TIER=Stack /STK=6 /UG=Rn.8964 /UG_TITLE=ESTs BM383402 hypothetical protein LOC682999 LOC682999 682999 NM_001127600 0043496 // regulation of protein homodimerization activity // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1374500_at AI011571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011571 /DB_XREF=gi:3225403 /DB_XREF=EST206022 /CLONE=ROVAW80 /FEA=EST /CNT=16 /TID=Rn.7210.1 /TIER=Stack /STK=6 /UG=Rn.7210 /UG_TITLE=ESTs AI011571 PRP38 pre-mRNA processing factor 38 (yeast) domain containing B Prpf38b 499691 NM_001024305 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation 1374501_at BF550209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550209 /DB_XREF=gi:11659987 /DB_XREF=UI-R-A1-ed-c-04-0-UI.r1 /CLONE=UI-R-A1-ed-c-04-0-UI /FEA=EST /CNT=14 /TID=Rn.22084.1 /TIER=Stack /STK=6 /UG=Rn.22084 /UG_TITLE=ESTs BF550209 1374502_at AI180286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180286 /DB_XREF=gi:3730924 /DB_XREF=EST224029 /CLONE=RSPCS82 /FEA=EST /CNT=14 /TID=Rn.13410.1 /TIER=Stack /STK=6 /UG=Rn.13410 /UG_TITLE=ESTs, Moderately similar to T17332 hypothetical protein DKFZp434D245.1 (H.sapiens) AI180286 RAB3 GTPase activating protein subunit 2 Rab3gap2 289350 NM_001040154 0043087 // regulation of GTPase activity // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0030234 // enzyme regulator activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1374503_at AI709810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709810 /DB_XREF=gi:4999586 /DB_XREF=UI-R-C3-tj-h-10-0-UI.s1 /CLONE=UI-R-C3-tj-h-10-0-UI /FEA=EST /CNT=13 /TID=Rn.28050.1 /TIER=Stack /STK=6 /UG=Rn.28050 /UG_TITLE=ESTs AI709810 pre-B-cell leukemia homeobox 3 Pbx3 311876 NM_001107834 0002087 // regulation of respiratory gaseous exchange by neurological system process // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // not recorded /// 0008344 // adult locomotory behavior // not recorded /// 0021516 // dorsal spinal cord development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048666 // neuron development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1374504_at BF415402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415402 /DB_XREF=gi:11403391 /DB_XREF=UI-R-CA1-blk-a-09-0-UI.s1 /CLONE=UI-R-CA1-blk-a-09-0-UI /FEA=EST /CNT=12 /TID=Rn.34543.1 /TIER=Stack /STK=6 /UG=Rn.34543 /UG_TITLE=ESTs BF415402 LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) Lsm6 498934 NM_001126085 0005515 // protein binding // not recorded 1374505_at AI411031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411031 /DB_XREF=gi:4254535 /DB_XREF=EST239325 /CLONE=RKIEG09 /FEA=EST /CNT=12 /TID=Rn.23953.1 /TIER=Stack /STK=6 /UG=Rn.23953 /UG_TITLE=ESTs AI411031 ghiso LOC100361188 100361188 XM_002726475 /// XM_002729439 1374506_at BI296403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296403 /DB_XREF=gi:14960792 /DB_XREF=UI-R-CV2-cgq-g-04-0-UI.s1 /CLONE=UI-R-CV2-cgq-g-04-0-UI /FEA=EST /CNT=12 /TID=Rn.23646.1 /TIER=Stack /STK=6 /UG=Rn.23646 /UG_TITLE=ESTs BI296403 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 Ddx31 311835 NM_001107824 0006508 // proteolysis // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1374507_at BE096671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096671 /DB_XREF=gi:8487561 /DB_XREF=UI-R-BU0-api-e-02-0-UI.s1 /CLONE=UI-R-BU0-api-e-02-0-UI /FEA=EST /CNT=12 /TID=Rn.19289.1 /TIER=Stack /STK=6 /UG=Rn.19289 /UG_TITLE=ESTs BE096671 ubiquitination factor E4B (UFD2 homolog, yeast) Ube4b 298652 XM_001075491 /// XM_233679 0000209 // protein polyubiquitination // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0009411 // response to UV // not recorded 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019899 // enzyme binding // not recorded /// 0034450 // ubiquitin-ubiquitin ligase activity // inferred from electronic annotation /// 0034450 // ubiquitin-ubiquitin ligase activity // not recorded 1374508_at BG663343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663343 /DB_XREF=gi:13885265 /DB_XREF=DRAAAHC06 /CLONE=DRAAAHC06 /FEA=EST /CNT=11 /TID=Rn.32745.1 /TIER=Stack /STK=6 /UG=Rn.32745 /UG_TITLE=ESTs BG663343 nephronophthisis 1 (juvenile) homolog (human) Nphp1 296136 NM_001106506 0030030 // cell projection organization // not recorded /// 0048515 // spermatid differentiation // not recorded /// 0060041 // retina development in camera-type eye // not recorded 0031514 // motile secondary cilium // not recorded /// 0032391 // photoreceptor connecting cilium // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1374509_at BI275722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275722 /DB_XREF=gi:14919914 /DB_XREF=UI-R-CW0-bwm-h-06-0-UI.s1 /CLONE=UI-R-CW0-bwm-h-06-0-UI /FEA=EST /CNT=11 /TID=Rn.16101.1 /TIER=Stack /STK=6 /UG=Rn.16101 /UG_TITLE=ESTs BI275722 1374510_at BI296300 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296300 /DB_XREF=gi:14960606 /DB_XREF=UI-R-DK0-cey-g-05-0-UI.s1 /CLONE=UI-R-DK0-cey-g-05-0-UI /FEA=EST /CNT=11 /TID=Rn.18859.1 /TIER=Stack /STK=6 /UG=Rn.18859 /UG_TITLE=ESTs BI296300 1374511_at BI291354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291354 /DB_XREF=gi:14950806 /DB_XREF=UI-R-CV2-cgp-a-06-0-UI.s1 /CLONE=UI-R-CV2-cgp-a-06-0-UI /FEA=EST /CNT=11 /TID=Rn.17289.1 /TIER=Stack /STK=6 /UG=Rn.17289 /UG_TITLE=ESTs BI291354 1374512_at AI232341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232341 /DB_XREF=gi:3816221 /DB_XREF=EST229029 /CLONE=RKICA45 /FEA=EST /CNT=11 /TID=Rn.3183.1 /TIER=Stack /STK=6 /UG=Rn.3183 /UG_TITLE=ESTs, Weakly similar to C13B9.2.p (Caenorhabditis elegans) (C.elegans) AI232341 similar to CG9886-like LOC684314 684314 NM_001109449 0006468 // protein phosphorylation // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008887 // glycerate kinase activity // inferred from sequence or structural similarity /// 0008887 // glycerate kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1374513_at BM389104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389104 /DB_XREF=gi:18189157 /DB_XREF=UI-R-DZ0-cko-a-17-0-UI.s1 /CLONE=UI-R-DZ0-cko-a-17-0-UI /FEA=EST /CNT=10 /TID=Rn.22453.1 /TIER=Stack /STK=6 /UG=Rn.22453 /UG_TITLE=ESTs BM389104 septin 7 Sept7 64551 NM_001113740 /// NM_022616 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0051291 // protein heterooligomerization // not recorded /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0001725 // stress fiber // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0031105 // septin complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1374514_at BG671893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671893 /DB_XREF=gi:13893992 /DB_XREF=DRNBZC05 /CLONE=DRNBZC05 /FEA=EST /CNT=10 /TID=Rn.17185.1 /TIER=Stack /STK=6 /UG=Rn.17185 /UG_TITLE=ESTs BG671893 1374515_at AA848948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848948 /DB_XREF=gi:2936488 /DB_XREF=EST191710 /CLONE=RLUAI29 /FEA=EST /CNT=10 /TID=Rn.1242.1 /TIER=Stack /STK=6 /UG=Rn.1242 /UG_TITLE=ESTs, Weakly similar to F18H3.1.p (Caenorhabditis elegans) (C.elegans) AA848948 similar to RIKEN cDNA 6330409N04 RGD1306437 290303 NM_001009635 1374516_at AI008492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008492 /DB_XREF=gi:3222324 /DB_XREF=EST202943 /CLONE=REMAY02 /FEA=EST /CNT=10 /TID=Rn.3278.1 /TIER=Stack /STK=6 /UG=Rn.3278 /UG_TITLE=ESTs AI008492 CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae) Chtf8 364996 NM_001126495 /// NM_001194951 0006260 // DNA replication // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1374517_at AA891612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891612 /DB_XREF=gi:3018491 /DB_XREF=EST195415 /CLONE=RKIAE58 /FEA=EST /CNT=10 /TID=Rn.13818.1 /TIER=Stack /STK=6 /UG=Rn.13818 /UG_TITLE=ESTs, Weakly similar to T19486 hypothetical protein C26D10.4 - Caenorhabditis elegans (C.elegans) AA891612 RecQ protein-like (DNA helicase Q1-like) Recql 312824 NM_001012098 0000733 // DNA strand renaturation // not recorded /// 0006260 // DNA replication // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000739 // DNA strand annealing activity // not recorded /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003678 // DNA helicase activity // not recorded /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0043140 // ATP-dependent 3'-5' DNA helicase activity // inferred from electronic annotation 1374518_at AA818113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818113 /DB_XREF=gi:4198628 /DB_XREF=UI-R-A0-am-g-02-0-UI.s1 /CLONE=UI-R-A0-am-g-02-0-UI /FEA=EST /CNT=10 /TID=Rn.1279.1 /TIER=Stack /STK=6 /UG=Rn.1279 /UG_TITLE=ESTs, Weakly similar to T13747 hypothetical protein EG:22E5.9 - fruit fly (D.melanogaster) AA818113 DNA-damage regulated autophagy modulator 2 Dram2 362011 NM_001025018 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from sequence or structural similarity 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from sequence or structural similarity /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1374519_at AI231782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231782 /DB_XREF=gi:3815662 /DB_XREF=EST228470 /CLONE=RHECO22 /FEA=EST /CNT=10 /TID=Rn.23309.1 /TIER=Stack /STK=6 /UG=Rn.23309 /UG_TITLE=ESTs, Weakly similar to I60486 gene trg protein - rat (R.norvegicus) AI231782 dedicator of cytokinesis 7 Dock7 313388 NM_001191574 /// XM_002726559 /// XM_002729510 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from electronic annotation /// 0032863 // activation of Rac GTPase activity // inferred from electronic annotation /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0043473 // pigmentation // inferred from electronic annotation /// 0045200 // establishment of neuroblast polarity // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0048365 // Rac GTPase binding // inferred from electronic annotation /// 0051020 // GTPase binding // inferred from electronic annotation 1374520_at BF287226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287226 /DB_XREF=gi:11218282 /DB_XREF=EST451803 /CLONE=RGIGD09 /FEA=EST /CNT=10 /TID=Rn.24564.1 /TIER=Stack /STK=6 /UG=Rn.24564 /UG_TITLE=ESTs BF287226 alpha-kinase 2 Alpk2 498875 XM_002725361 /// XM_574162 0006468 // protein phosphorylation // inferred from electronic annotation 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1374521_at AI230320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230320 /DB_XREF=gi:3814207 /DB_XREF=EST227015 /CLONE=REMCV01 /FEA=EST /CNT=10 /TID=Rn.8211.1 /TIER=Stack /STK=6 /UG=Rn.8211 /UG_TITLE=ESTs AI230320 Polycomb group ring finger 3 Pcgf3 305624 NM_001107245 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374522_at BG670847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670847 /DB_XREF=gi:13892946 /DB_XREF=DRNBGE07 /CLONE=DRNBGE07 /FEA=EST /CNT=10 /TID=Rn.24124.1 /TIER=Stack /STK=6 /UG=Rn.24124 /UG_TITLE=ESTs BG670847 1374523_at AI231339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231339 /DB_XREF=gi:3815219 /DB_XREF=EST228027 /CLONE=REMDI77 /FEA=EST /CNT=10 /TID=Rn.19855.1 /TIER=Stack /STK=6 /UG=Rn.19855 /UG_TITLE=ESTs, Moderately similar to 6-phosphogluconolactonase (Homo sapiens) (H.sapiens) AI231339 6-phosphogluconolactonase Pgls 290636 NM_001106066 0006098 // pentose-phosphate shunt // not recorded /// 0006098 // pentose-phosphate shunt // inferred from electronic annotation /// 0009051 // pentose-phosphate shunt, oxidative branch // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation /// 0017057 // 6-phosphogluconolactonase activity // inferred from direct assay /// 0017057 // 6-phosphogluconolactonase activity // not recorded /// 0017057 // 6-phosphogluconolactonase activity // inferred from electronic annotation /// 0048029 // monosaccharide binding // inferred from direct assay 1374524_at BM384384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384384 /DB_XREF=gi:18184437 /DB_XREF=UI-R-CN1-cjn-a-24-0-UI.s1 /CLONE=UI-R-CN1-cjn-a-24-0-UI /FEA=EST /CNT=10 /TID=Rn.23954.1 /TIER=Stack /STK=6 /UG=Rn.23954 /UG_TITLE=ESTs BM384384 selenocysteine lyase Scly 363285 NM_001007755 0008152 // metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0009000 // selenocysteine lyase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1374525_at BF284017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284017 /DB_XREF=gi:11215087 /DB_XREF=EST448608 /CLONE=RGIEJ95 /FEA=EST /CNT=10 /TID=Rn.16844.1 /TIER=Stack /STK=6 /UG=Rn.16844 /UG_TITLE=ESTs BF284017 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 Raph1 363239 NM_001108798 0007165 // signal transduction // inferred from electronic annotation 1374526_at BF396420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396420 /DB_XREF=gi:11381392 /DB_XREF=UI-R-BS2-bdx-h-10-0-UI.s1 /CLONE=UI-R-BS2-bdx-h-10-0-UI /FEA=EST /CNT=10 /TID=Rn.34948.1 /TIER=Stack /STK=6 /UG=Rn.34948 /UG_TITLE=ESTs BF396420 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374527_at AI172274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172274 /DB_XREF=gi:3712314 /DB_XREF=EST218275 /CLONE=RMUBX21 /FEA=EST /CNT=10 /TID=Rn.1408.1 /TIER=Stack /STK=6 /UG=Rn.1408 /UG_TITLE=ESTs, Weakly similar to ENOYL-COA HYDRATASE, MITOCHONDRIAL PRECURSOR (R.norvegicus) AI172274 enoyl Coenzyme A hydratase domain containing 2 Echdc2 298381 NM_001106675 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation 1374528_at BF418764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418764 /DB_XREF=gi:11406753 /DB_XREF=UI-R-BJ2-bql-g-01-0-UI.s1 /CLONE=UI-R-BJ2-bql-g-01-0-UI /FEA=EST /CNT=10 /TID=Rn.23294.1 /TIER=Stack /STK=6 /UG=Rn.23294 /UG_TITLE=ESTs BF418764 1374529_at AI406660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406660 /DB_XREF=gi:4250164 /DB_XREF=EST234947 /CLONE=ROVDV40 /FEA=EST /CNT=10 /TID=Rn.11906.1 /TIER=Stack /STK=6 /UG=Rn.11906 /UG_TITLE=ESTs AI406660 1374530_at AI010048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010048 /DB_XREF=gi:3223880 /DB_XREF=EST204499 /CLONE=RLUBS93 /FEA=EST /CNT=10 /TID=Rn.1806.1 /TIER=Stack /STK=6 /UG=Rn.1806 /UG_TITLE=ESTs AI010048 Frizzled homolog 7 (Drosophila) Fzd7 301440 XM_002727202 /// XM_237191 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0010812 // negative regulation of cell-substrate adhesion // not recorded /// 0014834 // satellite cell maintenance involved in skeletal muscle regeneration // not recorded /// 0033077 // T cell differentiation in thymus // not recorded /// 0034446 // substrate adhesion-dependent cell spreading // not recorded /// 0035567 // non-canonical Wnt receptor signaling pathway // not recorded /// 0048103 // somatic stem cell division // not recorded /// 0060054 // positive regulation of epithelial cell proliferation involved in wound healing // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0005886 // plasma membrane // not recorded 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0017147 // Wnt-protein binding // not recorded /// 0042813 // Wnt receptor activity // not recorded 1374531_at AA926305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926305 /DB_XREF=gi:4237496 /DB_XREF=UI-R-A1-el-f-06-0-UI.s1 /CLONE=UI-R-A1-el-f-06-0-UI /FEA=EST /CNT=10 /TID=Rn.1066.1 /TIER=Stack /STK=6 /UG=Rn.1066 /UG_TITLE=ESTs AA926305 1374532_at AI704291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI704291 /DB_XREF=gi:4992191 /DB_XREF=UI-R-AF0-yf-a-12-0-UI.s1 /CLONE=UI-R-AF0-yf-a-12-0-UI /FEA=EST /CNT=10 /TID=Rn.39290.1 /TIER=Stack /STK=6 /UG=Rn.39290 /UG_TITLE=ESTs AI704291 prostaglandin E synthase 2 Ptges2 311865 NM_001107832 0045449 // regulation of transcription // not recorded /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0046903 // secretion // not recorded 0005634 // nucleus // not recorded /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded 1374533_at AI234190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234190 /DB_XREF=gi:3818070 /DB_XREF=EST230878 /CLONE=RLUCW81 /FEA=EST /CNT=10 /TID=Rn.15863.1 /TIER=Stack /STK=6 /UG=Rn.15863 /UG_TITLE=ESTs AI234190 GA repeat binding protein, beta 1 Gabpb1 499883 NM_001039036 1374534_at AI233243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233243 /DB_XREF=gi:3817123 /DB_XREF=EST229931 /CLONE=RKIDC63 /FEA=EST /CNT=9 /TID=Rn.8882.1 /TIER=Stack /STK=6 /UG=Rn.8882 /UG_TITLE=ESTs, Weakly similar to ATPGTP-binding protein (Caenorhabditis elegans) (C.elegans) AI233243 ras homolog gene family, member T2 Rhot2 287156 NM_181823 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from sequence or structural similarity /// 0006915 // apoptosis // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0019725 // cellular homeostasis // not recorded /// 0019725 // cellular homeostasis // inferred from sequence or structural similarity /// 0019725 // cellular homeostasis // inferred from electronic annotation /// 0047497 // mitochondrion transport along microtubule // not recorded /// 0047497 // mitochondrion transport along microtubule // inferred from sequence or structural similarity /// 0047497 // mitochondrion transport along microtubule // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031307 // integral to mitochondrial outer membrane // not recorded /// 0031307 // integral to mitochondrial outer membrane // inferred from sequence or structural similarity /// 0031307 // integral to mitochondrial outer membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1374535_at BI283881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283881 /DB_XREF=gi:14936061 /DB_XREF=UI-R-CX0s-ccx-g-07-0-UI.s1 /CLONE=UI-R-CX0s-ccx-g-07-0-UI /FEA=EST /CNT=9 /TID=Rn.25160.1 /TIER=Stack /STK=6 /UG=Rn.25160 /UG_TITLE=ESTs BI283881 actin filament associated protein 1-like 2 Afap1l2 292130 XM_001064140 /// XM_217643 0006954 // inflammatory response // not recorded /// 0007346 // regulation of mitotic cell cycle // not recorded /// 0032675 // regulation of interleukin-6 production // not recorded /// 0032757 // positive regulation of interleukin-8 production // not recorded /// 0045742 // positive regulation of epidermal growth factor receptor signaling pathway // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005737 // cytoplasm // not recorded 0017124 // SH3 domain binding // not recorded /// 0030296 // protein tyrosine kinase activator activity // not recorded /// 0042169 // SH2 domain binding // not recorded 1374536_at BG671506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671506 /DB_XREF=gi:13893605 /DB_XREF=DRNBTC01 /CLONE=DRNBTC01 /FEA=EST /CNT=9 /TID=Rn.7516.1 /TIER=Stack /STK=6 /UG=Rn.7516 /UG_TITLE=ESTs BG671506 1374537_at AI406533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406533 /DB_XREF=gi:4250037 /DB_XREF=EST234819 /CLONE=RBRDL32 /FEA=EST /CNT=9 /TID=Rn.13788.1 /TIER=Stack /STK=6 /UG=Rn.13788 /UG_TITLE=ESTs AI406533 chondroitin sulfate synthase 1 Chsy1 292999 NM_001106268 0030206 // chondroitin sulfate biosynthetic process // not recorded /// 0031667 // response to nutrient levels // inferred from expression pattern 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0047238 // glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity // not recorded 1374538_at AW915001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915001 /DB_XREF=gi:8080685 /DB_XREF=EST346305 /CLONE=RGIBN34 /FEA=EST /CNT=9 /TID=Rn.13079.1 /TIER=Stack /STK=6 /UG=Rn.13079 /UG_TITLE=ESTs AW915001 protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase Pomgnt1 362567 NM_001007747 0006487 // protein N-linked glycosylation // inferred from electronic annotation /// 0006493 // protein O-linked glycosylation // inferred from electronic annotation /// 0006493 // protein O-linked glycosylation // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003827 // alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0047223 // beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity // not recorded 1374539_at AA850290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850290 /DB_XREF=gi:4131819 /DB_XREF=EST193057 /CLONE=ROVAE46 /FEA=EST /CNT=9 /TID=Rn.8188.1 /TIER=Stack /STK=6 /UG=Rn.8188 /UG_TITLE=ESTs, Weakly similar to AT5A MOUSE POTENTIAL PHOSPHOLIPID-TRANSPORTING ATPASE VA (M.musculus) AA850290 1374540_at AA859235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859235 /DB_XREF=gi:4229592 /DB_XREF=UI-R-E0-cd-d-01-0-UI.s1 /CLONE=UI-R-E0-cd-d-01-0-UI /FEA=EST /CNT=9 /TID=Rn.2638.1 /TIER=Stack /STK=6 /UG=Rn.2638 /UG_TITLE=ESTs AA859235 cell division cycle associated 7 Cdca7 311742 NM_001025693 0006350 // transcription // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 1374541_at BM392117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392117 /DB_XREF=gi:18192170 /DB_XREF=UI-R-DO1-ckp-o-09-0-UI.s1 /CLONE=UI-R-DO1-ckp-o-09-0-UI /FEA=EST /CNT=9 /TID=Rn.22397.1 /TIER=Stack /STK=6 /UG=Rn.22397 /UG_TITLE=ESTs, Weakly similar to GLYCOGEN (R.norvegicus) BM392117 glycogen synthase 1, muscle Gys1 690987 NM_001109615 0005977 // glycogen metabolic process // inferred from direct assay /// 0005978 // glycogen biosynthetic process // inferred from direct assay /// 0005978 // glycogen biosynthetic process // not recorded /// 0005978 // glycogen biosynthetic process // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016234 // inclusion body // inferred from electronic annotation /// 0016234 // inclusion body // not recorded 0004373 // glycogen (starch) synthase activity // inferred from direct assay /// 0004373 // glycogen (starch) synthase activity // not recorded /// 0004373 // glycogen (starch) synthase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005536 // glucose binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1374542_at AI409904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409904 /DB_XREF=gi:4253408 /DB_XREF=EST238197 /CLONE=RPLDM95 /FEA=EST /CNT=9 /TID=Rn.1325.1 /TIER=Stack /STK=6 /UG=Rn.1325 /UG_TITLE=ESTs, Moderately similar to Y273_HUMAN HYPOTHETICAL PROTEIN KIAA0273 (H.sapiens) AI409904 1374543_at AA858791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858791 /DB_XREF=gi:4228984 /DB_XREF=UI-R-A0-bn-e-10-0-UI.s1 /CLONE=UI-R-A0-bn-e-10-0-UI /FEA=EST /CNT=9 /TID=Rn.16899.1 /TIER=Stack /STK=6 /UG=Rn.16899 /UG_TITLE=ESTs AA858791 1374544_at BM384374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384374 /DB_XREF=gi:18184427 /DB_XREF=UI-R-CN1-cjn-a-02-0-UI.s1 /CLONE=UI-R-CN1-cjn-a-02-0-UI /FEA=EST /CNT=9 /TID=Rn.19946.1 /TIER=Stack /STK=6 /UG=Rn.19946 /UG_TITLE=ESTs BM384374 platelet receptor Gi24 MGC112715 690899 NM_001044300 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005044 // scavenger receptor activity // inferred from electronic annotation 1374545_at AA945202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945202 /DB_XREF=gi:3105118 /DB_XREF=EST200701 /CLONE=RLIAH88 /FEA=EST /CNT=9 /TID=Rn.7842.1 /TIER=Stack /STK=6 /UG=Rn.7842 /UG_TITLE=ESTs AA945202 mex-3 homolog C (C. elegans) Mex3c 307271 NM_001107377 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374546_at AW918040 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918040 /DB_XREF=gi:8083807 /DB_XREF=EST349344 /CLONE=RGIEL51 /FEA=EST /CNT=9 /TID=Rn.25249.1 /TIER=Stack /STK=6 /UG=Rn.25249 /UG_TITLE=ESTs AW918040 1374547_at BI285509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285509 /DB_XREF=gi:14939224 /DB_XREF=UI-R-CW0s-ccb-a-01-0-UI.s1 /CLONE=UI-R-CW0s-ccb-a-01-0-UI /FEA=EST /CNT=9 /TID=Rn.15621.1 /TIER=Stack /STK=6 /UG=Rn.15621 /UG_TITLE=ESTs BI285509 small EDRK-rich factor 2 Serf2 502663 NM_001098782 1374548_at BE104797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104797 /DB_XREF=gi:8496897 /DB_XREF=UI-R-BX0-art-g-03-0-UI.s1 /CLONE=UI-R-BX0-art-g-03-0-UI /FEA=EST /CNT=9 /TID=Rn.17594.1 /TIER=Stack /STK=6 /UG=Rn.17594 /UG_TITLE=ESTs BE104797 AF4/FMR2 family, member 4 Aff4 303132 NM_001107001 0007286 // spermatid development // not recorded 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1374549_at AI317860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI317860 /DB_XREF=gi:4033127 /DB_XREF=EST234531 /CLONE=RPPAA75 /FEA=EST /CNT=9 /TID=Rn.8843.1 /TIER=Stack /STK=6 /UG=Rn.8843 /UG_TITLE=ESTs AI317860 RNA binding motif protein 4B Rbm4b 474154 NM_001007014 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374550_at BI277482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277482 /DB_XREF=gi:14923402 /DB_XREF=UI-R-CY0-bxq-f-08-0-UI.s1 /CLONE=UI-R-CY0-bxq-f-08-0-UI /FEA=EST /CNT=9 /TID=Rn.7910.1 /TIER=Stack /STK=6 /UG=Rn.7910 /UG_TITLE=ESTs BI277482 MAP kinase-interacting serine/threonine kinase 1 Mknk1 500526 NM_001044267 0006417 // regulation of translation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1374551_at BM388891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388891 /DB_XREF=gi:18188944 /DB_XREF=UI-R-DZ0-ckn-o-24-0-UI.s1 /CLONE=UI-R-DZ0-ckn-o-24-0-UI /FEA=EST /CNT=9 /TID=Rn.44680.1 /TIER=Stack /STK=6 /UG=Rn.44680 /UG_TITLE=ESTs, Moderately similar to JC5262 leucine zipper protein IFP35 (H.sapiens) BM388891 interferon-induced protein 35 Ifi35 287719 NM_001009625 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1374552_at BF412718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412718 /DB_XREF=gi:11400707 /DB_XREF=UI-R-BT1-bnt-d-05-0-UI.s1 /CLONE=UI-R-BT1-bnt-d-05-0-UI /FEA=EST /CNT=9 /TID=Rn.24172.1 /TIER=Stack /STK=6 /UG=Rn.24172 /UG_TITLE=ESTs, Weakly similar to S12207 hypothetical protein (M.musculus) BF412718 1374553_at AW535229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535229 /DB_XREF=gi:7177604 /DB_XREF=UI-R-C4-alu-c-04-0-UI.s1 /CLONE=UI-R-C4-alu-c-04-0-UI /FEA=EST /CNT=9 /TID=Rn.43818.1 /TIER=Stack /STK=6 /UG=Rn.43818 /UG_TITLE=ESTs AW535229 family with sequence similarity 32, member A Fam32a 498600 NM_001128078 0005730 // nucleolus // not recorded 1374554_at BF281325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281325 /DB_XREF=gi:11212395 /DB_XREF=EST445916 /CLONE=RGIAD28 /FEA=EST /CNT=9 /TID=Rn.7017.1 /TIER=Stack /STK=6 /UG=Rn.7017 /UG_TITLE=ESTs BF281325 similar to HT014 RGD1308048 298557 XM_001068778 /// XM_216543 1374555_at AI501425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501425 /DB_XREF=gi:4399276 /DB_XREF=UI-R-C2p-sb-a-02-0-UI.s1 /CLONE=UI-R-C2p-sb-a-02-0-UI /FEA=EST /CNT=9 /TID=Rn.27349.1 /TIER=Stack /STK=6 /UG=Rn.27349 /UG_TITLE=ESTs, Weakly similar to S68418 protein phosphatase 1M chain M110 isoform - rat (R.norvegicus) AI501425 acyl-Coenzyme A binding domain containing 6 Acbd6 289125 NM_001011906 0005737 // cytoplasm // inferred from electronic annotation 0000062 // acyl-CoA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1374556_at BI289700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289700 /DB_XREF=gi:14947550 /DB_XREF=UI-R-DK0-cfn-b-04-0-UI.s1 /CLONE=UI-R-DK0-cfn-b-04-0-UI /FEA=EST /CNT=9 /TID=Rn.13260.1 /TIER=Stack /STK=6 /UG=Rn.13260 /UG_TITLE=ESTs, Highly similar to T47142 hypothetical protein DKFZp761P0724.1 (H.sapiens) BI289700 spermine oxidase Smox 308652 NM_001134854 0046208 // spermine catabolic process // not recorded 0046592 // polyamine oxidase activity // not recorded 1374557_at BF394235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394235 /DB_XREF=gi:11379099 /DB_XREF=UI-R-CA0-bhc-d-01-0-UI.s1 /CLONE=UI-R-CA0-bhc-d-01-0-UI /FEA=EST /CNT=9 /TID=Rn.49016.1 /TIER=Stack /STK=6 /UG=Rn.49016 /UG_TITLE=ESTs BF394235 G protein-coupled receptor 177 Gpr177 362065 NM_001085353 /// NM_199408 0001707 // mesoderm formation // inferred from electronic annotation /// 0001707 // mesoderm formation // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009948 // anterior/posterior axis specification // inferred from electronic annotation /// 0009948 // anterior/posterior axis specification // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017147 // Wnt-protein binding // inferred from electronic annotation /// 0017147 // Wnt-protein binding // not recorded 1374558_at AI010316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010316 /DB_XREF=gi:3224148 /DB_XREF=EST204767 /CLONE=RLUBX06 /FEA=EST /CNT=9 /TID=Rn.17428.1 /TIER=Stack /STK=6 /UG=Rn.17428 /UG_TITLE=ESTs AI010316 1374559_at AI171211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171211 /DB_XREF=gi:3711251 /DB_XREF=EST217165 /CLONE=RMUBH62 /FEA=EST /CNT=9 /TID=Rn.15010.1 /TIER=Stack /STK=6 /UG=Rn.15010 /UG_TITLE=ESTs AI171211 ring finger protein 26 Rnf26 300659 NM_001113748 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374560_at AI137296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137296 /DB_XREF=gi:3638073 /DB_XREF=UI-R-C2p-ol-c-06-0-UI.s1 /CLONE=UI-R-C2p-ol-c-06-0-UI /FEA=EST /CNT=9 /TID=Rn.22764.1 /TIER=Stack /STK=6 /UG=Rn.22764 /UG_TITLE=ESTs AI137296 proline-rich coiled-coil 1 Prrc1 291444 NM_001033887 0005794 // Golgi apparatus // inferred from electronic annotation 0042802 // identical protein binding // not recorded 1374561_at AW523899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523899 /DB_XREF=gi:7166284 /DB_XREF=UI-R-BO0-aie-c-08-0-UI.s1 /CLONE=UI-R-BO0-aie-c-08-0-UI /FEA=EST /CNT=9 /TID=Rn.7798.1 /TIER=Stack /STK=6 /UG=Rn.7798 /UG_TITLE=ESTs AW523899 family with sequence similarity 193, member A Fam193a 305452 XM_002724985 /// XM_223536 1374562_at AI177115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177115 /DB_XREF=gi:4134955 /DB_XREF=EST220722 /CLONE=ROVCB10 /FEA=EST /CNT=9 /TID=Rn.24932.1 /TIER=Stack /STK=6 /UG=Rn.24932 /UG_TITLE=ESTs AI177115 similar to KIAA1267 protein RGD1311429 360642 XR_006336 /// XR_085563 1374563_at BI301280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301280 /DB_XREF=gi:14977560 /DB_XREF=UI-R-DK0-cek-h-05-0-UI.s2 /CLONE=UI-R-DK0-cek-h-05-0-UI /FEA=EST /CNT=9 /TID=Rn.2943.1 /TIER=Stack /STK=6 /UG=Rn.2943 /UG_TITLE=ESTs BI301280 1374564_at BE099401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099401 /DB_XREF=gi:8491317 /DB_XREF=UI-R-BJ1-atw-e-01-0-UI.s1 /CLONE=UI-R-BJ1-atw-e-01-0-UI /FEA=EST /CNT=9 /TID=Rn.18077.1 /TIER=Stack /STK=6 /UG=Rn.18077 /UG_TITLE=ESTs, Weakly similar to S47857 basic protein, cytosolic - fruit fly (D.melanogaster) BE099401 deltex homolog 2 (Drosophila) Dtx2 304591 NM_001107157 0007219 // Notch signaling pathway // not recorded /// 0007219 // Notch signaling pathway // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374565_at BF282365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282365 /DB_XREF=gi:11213347 /DB_XREF=EST446868 /CLONE=RGIDI69 /FEA=EST /CNT=9 /TID=Rn.18744.1 /TIER=Stack /STK=6 /UG=Rn.18744 /UG_TITLE=ESTs BF282365 NIMA (never in mitosis gene a)-related kinase 6 Nek6 360161 NM_182953 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // not recorded /// 0007059 // chromosome segregation // inferred from sequence or structural similarity /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0030071 // regulation of mitotic metaphase/anaphase transition // not recorded /// 0030071 // regulation of mitotic metaphase/anaphase transition // inferred from sequence or structural similarity /// 0030071 // regulation of mitotic metaphase/anaphase transition // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1374566_at AI237243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237243 /DB_XREF=gi:3830749 /DB_XREF=EST233805 /CLONE=RPLCV37 /FEA=EST /CNT=9 /TID=Rn.20027.1 /TIER=Stack /STK=6 /UG=Rn.20027 /UG_TITLE=ESTs AI237243 1374567_at AI408443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408443 /DB_XREF=gi:4251947 /DB_XREF=EST236733 /CLONE=ROVEO44 /FEA=EST /CNT=9 /TID=Rn.19449.1 /TIER=Stack /STK=6 /UG=Rn.19449 /UG_TITLE=ESTs AI408443 zinc finger, C3H1-type containing Zfc3h1 314836 XM_001078700 /// XM_235146 0006396 // RNA processing // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1374568_at BF284775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284775 /DB_XREF=gi:11215845 /DB_XREF=EST449366 /CLONE=RGIEW19 /FEA=EST /CNT=9 /TID=Rn.19617.1 /TIER=Stack /STK=6 /UG=Rn.19617 /UG_TITLE=ESTs BF284775 similar to mKIAA1737 protein RGD1309492 314330 NM_001108044 1374569_at BF419158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419158 /DB_XREF=gi:11407188 /DB_XREF=UI-R-BJ2-bqo-g-06-0-UI.s1 /CLONE=UI-R-BJ2-bqo-g-06-0-UI /FEA=EST /CNT=9 /TID=Rn.40910.1 /TIER=Stack /STK=6 /UG=Rn.40910 /UG_TITLE=ESTs, Weakly similar to YM15_YEAST HYPOTHETICAL 57.3 KDA TRP-ASP REPEATS CONTAINING PROTEIN IN POM152-REC114 INTERGENIC REGION (S.cerevisiae) BF419158 glutamate-rich WD repeat containing 1 Grwd1 308592 NM_001012067 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 1374570_at AI012474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012474 /DB_XREF=gi:3226306 /DB_XREF=EST206925 /CLONE=RPLAX66 /FEA=EST /CNT=9 /TID=Rn.17853.1 /TIER=Stack /STK=6 /UG=Rn.17853 /UG_TITLE=ESTs AI012474 1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta) Agpat2 311821 NM_001107821 0001819 // positive regulation of cytokine production // not recorded /// 0006654 // phosphatidic acid biosynthetic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008544 // epidermis development // inferred from expression pattern /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // not recorded /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // inferred from electronic annotation /// 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046027 // phospholipid:diacylglycerol acyltransferase activity // not recorded 1374571_at AI172192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172192 /DB_XREF=gi:3712232 /DB_XREF=EST218188 /CLONE=RMUBW09 /FEA=EST /CNT=9 /TID=Rn.34037.1 /TIER=Stack /STK=6 /UG=Rn.34037 /UG_TITLE=ESTs AI172192 phosphatidylinositol glycan anchor biosynthesis, class X Pigx 288041 NM_001100651 0006506 // GPI anchor biosynthetic process // inferred from electronic annotation /// 0016254 // preassembly of GPI anchor in ER membrane // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1374572_at BI294229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294229 /DB_XREF=gi:14956489 /DB_XREF=UI-R-DK0-cea-c-01-0-UI.s1 /CLONE=UI-R-DK0-cea-c-01-0-UI /FEA=EST /CNT=9 /TID=Rn.12177.1 /TIER=Stack /STK=6 /UG=Rn.12177 /UG_TITLE=ESTs BI294229 GATS protein-like 3 Gatsl3 360969 NM_001025128 1374573_at BE113181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113181 /DB_XREF=gi:8505286 /DB_XREF=UI-R-BJ1-awc-d-12-0-UI.s1 /CLONE=UI-R-BJ1-awc-d-12-0-UI /FEA=EST /CNT=9 /TID=Rn.12074.1 /TIER=Stack /STK=6 /UG=Rn.12074 /UG_TITLE=ESTs, Moderately similar to T08695 hypothetical protein DKFZp564A033.1 (H.sapiens) BE113181 dynein cytoplasmic 2 light intermediate chain 1 Dync2li1 298767 NM_001013940 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0030030 // cell projection organization // inferred from electronic annotation /// 0042384 // cilium assembly // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0030286 // dynein complex // inferred from electronic annotation /// 0035085 // cilium axoneme // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0003774 // motor activity // inferred from electronic annotation 1374574_at AI547611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547611 /DB_XREF=gi:4465099 /DB_XREF=UI-R-C3-sz-c-03-0-UI.s1 /CLONE=UI-R-C3-sz-c-03-0-UI /FEA=EST /CNT=9 /TID=Rn.7576.1 /TIER=Stack /STK=6 /UG=Rn.7576 /UG_TITLE=ESTs AI547611 similar to hypothetical protein MGC38960 RGD1310552 300836 NM_001106838 1374575_at BI304123 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI304123 /DB_XREF=gi:14980403 /DB_XREF=UI-R-DR0-cjc-j-23-0-UI.s1 /CLONE=UI-R-DR0-cjc-j-23-0-UI /FEA=EST /CNT=9 /TID=Rn.24541.1 /TIER=Stack /STK=6 /UG=Rn.24541 /UG_TITLE=ESTs BI304123 cAMP responsive element binding protein 3-like 1 Creb3l1 362165 NM_001005562 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1374576_at BF283857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283857 /DB_XREF=gi:11214927 /DB_XREF=EST448448 /CLONE=RGIEH45 /FEA=EST /CNT=9 /TID=Rn.2573.1 /TIER=Stack /STK=6 /UG=Rn.2573 /UG_TITLE=ESTs BF283857 HAUS augmin-like complex, subunit 5 LOC100362495 100362495 XM_002725564 /// XM_002728731 1374577_at AW254561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254561 /DB_XREF=gi:6598152 /DB_XREF=UI-R-BJ0-aej-g-10-0-UI.s1 /CLONE=UI-R-BJ0-aej-g-10-0-UI /FEA=EST /CNT=9 /TID=Rn.22830.1 /TIER=Stack /STK=6 /UG=Rn.22830 /UG_TITLE=ESTs AW254561 transforming growth factor beta regulator 4 Tbrg4 360977 NM_001012154 0006915 // apoptosis // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0004672 // protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1374578_at AI409501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409501 /DB_XREF=gi:4253005 /DB_XREF=EST237793 /CLONE=RKIDK14 /FEA=EST /CNT=9 /TID=Rn.17879.1 /TIER=Stack /STK=6 /UG=Rn.17879 /UG_TITLE=ESTs, Weakly similar to B48013 proline-rich proteoglycan 2 precursor, parotid - rat (R.norvegicus) AI409501 1374579_at BF281860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281860 /DB_XREF=gi:11212930 /DB_XREF=EST446451 /CLONE=RGIBH36 /FEA=EST /CNT=9 /TID=Rn.40260.1 /TIER=Stack /STK=6 /UG=Rn.40260 /UG_TITLE=ESTs BF281860 similar to RIKEN cDNA E230015L20 gene RGD1560873 306238 XR_085636 /// XR_086038 1374580_at AW535691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535691 /DB_XREF=gi:7178105 /DB_XREF=UI-R-BS0-anz-h-05-0-UI.s1 /CLONE=UI-R-BS0-anz-h-05-0-UI /FEA=EST /CNT=16 /TID=Rn.18196.1 /TIER=Stack /STK=6 /UG=Rn.18196 /UG_TITLE=ESTs AW535691 SUMO1/sentrin specific peptidase 6 Senp6 300860 NM_001106842 0006508 // proteolysis // inferred from electronic annotation 0008234 // cysteine-type peptidase activity // inferred from electronic annotation 1374581_at BM384392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384392 /DB_XREF=gi:18184445 /DB_XREF=UI-R-CN1-cjn-c-18-0-UI.s1 /CLONE=UI-R-CN1-cjn-c-18-0-UI /FEA=EST /CNT=16 /TID=Rn.1596.1 /TIER=Stack /STK=6 /UG=Rn.1596 /UG_TITLE=ESTs BM384392 Der1-like domain family, member 1 Derl1 362912 NM_001014202 0030433 // ER-associated protein catabolic process // inferred from electronic annotation /// 0030433 // ER-associated protein catabolic process // not recorded /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // not recorded /// 0030970 // retrograde protein transport, ER to cytosol // inferred from electronic annotation /// 0030970 // retrograde protein transport, ER to cytosol // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042288 // MHC class I protein binding // inferred from electronic annotation /// 0042288 // MHC class I protein binding // not recorded 1374582_at AI175423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175423 /DB_XREF=gi:3726061 /DB_XREF=EST218967 /CLONE=RMUCN29 /FEA=EST /CNT=14 /TID=Rn.9317.1 /TIER=Stack /STK=6 /UG=Rn.9317 /UG_TITLE=ESTs AI175423 potassium channel tetramerisation domain containing 9 Kctd9 364410 NM_001108871 0006813 // potassium ion transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1374583_at BI288131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288131 /DB_XREF=gi:14944413 /DB_XREF=UI-R-DK0-cdc-c-10-0-UI.s1 /CLONE=UI-R-DK0-cdc-c-10-0-UI /FEA=EST /CNT=14 /TID=Rn.7059.1 /TIER=Stack /STK=6 /UG=Rn.7059 /UG_TITLE=ESTs BI288131 1374584_at BM388112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388112 /DB_XREF=gi:18188165 /DB_XREF=UI-R-DM1-cjz-j-09-0-UI.s1 /CLONE=UI-R-DM1-cjz-j-09-0-UI /FEA=EST /CNT=13 /TID=Rn.12939.1 /TIER=Stack /STK=6 /UG=Rn.12939 /UG_TITLE=ESTs, Weakly similar to serinethreonine kinase 25 (yeast); Ste20-like kinase; serinethreonine kinase 25 (Ste20, yeast homolog); Yeast Sps1Ste20-related kinase 1 (Mus musculus) (M.musculus) BM388112 similar to serine/threonine protein kinase 24 /// serine/threonine kinase 24 (STE20 homolog, yeast) LOC501266 /// Stk24 361092 /// 501266 NM_001127494 /// XR_009551 /// XR_086351 0006468 // protein phosphorylation // inferred from electronic annotation /// 0048680 // positive regulation of axon regeneration // inferred from mutant phenotype 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1374585_at AW915152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915152 /DB_XREF=gi:8080839 /DB_XREF=EST346456 /CLONE=RGICL24 /FEA=EST /CNT=13 /TID=Rn.4220.1 /TIER=Stack /STK=6 /UG=Rn.4220 /UG_TITLE=ESTs, Weakly similar to T25601 hypothetical protein C32E8.9 - Caenorhabditis elegans (C.elegans) AW915152 enoyl Coenzyme A hydratase domain containing 1 Echdc1 361465 NM_001007734 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation 1374586_at AI103993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103993 /DB_XREF=gi:3704887 /DB_XREF=EST213282 /CLONE=RHEBW03 /FEA=EST /CNT=13 /TID=Rn.24536.1 /TIER=Stack /STK=6 /UG=Rn.24536 /UG_TITLE=ESTs AI103993 ADP-ribosylation factor-like 15 Arl15 689079 XM_001069431 /// XM_002725902 0005525 // GTP binding // inferred from electronic annotation 1374587_at AI009750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009750 /DB_XREF=gi:3223582 /DB_XREF=EST204201 /CLONE=RLUBO03 /FEA=EST /CNT=12 /TID=Rn.3901.1 /TIER=Stack /STK=6 /UG=Rn.3901 /UG_TITLE=ESTs AI009750 transmembrane and tetratricopeptide repeat containing 3 Tmtc3 314785 NM_001135858 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1374588_at BM389462 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389462 /DB_XREF=gi:18189515 /DB_XREF=UI-R-CN1-cjn-f-21-0-UI.s1 /CLONE=UI-R-CN1-cjn-f-21-0-UI /FEA=EST /CNT=12 /TID=Rn.17376.1 /TIER=Stack /STK=6 /UG=Rn.17376 /UG_TITLE=ESTs BM389462 sulfatase modifying factor 1 Sumf1 362409 NM_001108639 0005783 // endoplasmic reticulum // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1374589_at AI235367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235367 /DB_XREF=gi:3828873 /DB_XREF=EST231929 /CLONE=ROVCQ95 /FEA=EST /CNT=12 /TID=Rn.16786.1 /TIER=Stack /STK=6 /UG=Rn.16786 /UG_TITLE=ESTs, Weakly similar to T42706 hypothetical protein DKFZp434O158.1 (H.sapiens) AI235367 vezatin, adherens junctions transmembrane protein Vezt 299738 NM_001006984 0016337 // cell-cell adhesion // not recorded /// 0043009 // chordate embryonic development // not recorded 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0002142 // stereocilia ankle link complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // not recorded 1374590_at BF420110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420110 /DB_XREF=gi:11408099 /DB_XREF=UI-R-BJ2-bpj-a-06-0-UI.s1 /CLONE=UI-R-BJ2-bpj-a-06-0-UI /FEA=EST /CNT=12 /TID=Rn.18939.1 /TIER=Stack /STK=6 /UG=Rn.18939 /UG_TITLE=ESTs, Weakly similar to 130kDa-Ins(1,4,5)P3 binding protein (Rattus norvegicus) (R.norvegicus) BF420110 phospholipase C-like 2 Plcl2 301173 NM_001106880 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0004435 // phosphoinositide phospholipase C activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1374591_at AI409042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409042 /DB_XREF=gi:4252546 /DB_XREF=EST237334 /CLONE=RKIDO92 /FEA=EST /CNT=11 /TID=Rn.15271.1 /TIER=Stack /STK=6 /UG=Rn.15271 /UG_TITLE=ESTs AI409042 protein tyrosine phosphatase, receptor type, D Ptprd 313278 XM_001067936 /// XM_233065 0006470 // protein dephosphorylation // inferred from electronic annotation 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1374592_at BI282671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282671 /DB_XREF=gi:14933673 /DB_XREF=UI-R-CW0s-ccd-g-09-0-UI.s1 /CLONE=UI-R-CW0s-ccd-g-09-0-UI /FEA=EST /CNT=11 /TID=Rn.6057.1 /TIER=Stack /STK=6 /UG=Rn.6057 /UG_TITLE=ESTs, Moderately similar to T46484 hypothetical protein DKFZp434B055.1 (H.sapiens) BI282671 BTB (POZ) domain containing 6 Btbd6 690367 NM_001077683 0005515 // protein binding // inferred from electronic annotation 1374593_at AA799421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799421 /DB_XREF=gi:4131394 /DB_XREF=EST188918 /CLONE=RHEAA87 /FEA=EST /CNT=11 /TID=Rn.19951.1 /TIER=Stack /STK=6 /UG=Rn.19951 /UG_TITLE=ESTs, Highly similar to PROTEIN KINASE C, EPSILON TYPE (R.norvegicus) AA799421 protein kinase C, epsilon Prkce 29340 NM_017171 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // not recorded 0000139 // Golgi membrane // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004697 // protein kinase C activity // not recorded /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0004699 // calcium-independent protein kinase C activity // inferred from electronic annotation /// 0004699 // calcium-independent protein kinase C activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008047 // enzyme activator activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from physical interaction /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1374594_at AI599133 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599133 /DB_XREF=gi:4608181 /DB_XREF=EST250836 /CLONE=REMEB39 /FEA=EST /CNT=11 /TID=Rn.17221.1 /TIER=Stack /STK=6 /UG=Rn.17221 /UG_TITLE=ESTs AI599133 similar to RIKEN cDNA 1600029D21 LOC363060 363060 NM_001014209 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1374595_at BF282323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282323 /DB_XREF=gi:11213494 /DB_XREF=EST447015 /CLONE=RGIDN23 /FEA=EST /CNT=10 /TID=Rn.12859.1 /TIER=Stack /STK=6 /UG=Rn.12859 /UG_TITLE=ESTs BF282323 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 Tnks2 309512 NM_001107607 0000723 // telomere maintenance // not recorded /// 0006471 // protein ADP-ribosylation // not recorded /// 0035264 // multicellular organism growth // not recorded /// 0040014 // regulation of multicellular organism growth // not recorded /// 0070198 // protein localization to chromosome, telomeric region // not recorded 0000242 // pericentriolar material // not recorded /// 0005634 // nucleus // not recorded /// 0005635 // nuclear envelope // not recorded /// 0005737 // cytoplasm // not recorded /// 0005792 // microsome // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from electronic annotation /// 0003950 // NAD+ ADP-ribosyltransferase activity // not recorded 1374596_at BG666593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666593 /DB_XREF=gi:13888515 /DB_XREF=DRABPC01 /CLONE=DRABPC01 /FEA=EST /CNT=10 /TID=Rn.7766.1 /TIER=Stack /STK=6 /UG=Rn.7766 /UG_TITLE=ESTs, Highly similar to C212_HUMAN 28.3 KD PROTEIN C21ORF2 (H.sapiens) BG666593 similar to RIKEN cDNA 1810043G02; DNA segment, Chr 10, Johns Hopkins University 13, expressed RGD1309594 309681 NM_001008351 1374597_at BI275770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275770 /DB_XREF=gi:14920009 /DB_XREF=UI-R-CX0-bxg-d-10-0-UI.s1 /CLONE=UI-R-CX0-bxg-d-10-0-UI /FEA=EST /CNT=10 /TID=Rn.21713.1 /TIER=Stack /STK=6 /UG=Rn.21713 /UG_TITLE=ESTs, Weakly similar to T13609 hypothetical protein EG:87B1.6 - fruit fly (D.melanogaster) BI275770 cDNA sequence BC034664-like LOC100363003 100363003 XM_002725246 /// XM_002728464 1374598_at AW914984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW914984 /DB_XREF=gi:8080668 /DB_XREF=EST346288 /CLONE=RGIBN17 /FEA=EST /CNT=10 /TID=Rn.11641.1 /TIER=Stack /STK=6 /UG=Rn.11641 /UG_TITLE=ESTs, Moderately similar to T43483 translation initiation factor IF-2 homolog (H.sapiens) AW914984 1374599_at BM386001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386001 /DB_XREF=gi:18186054 /DB_XREF=UI-R-DN1-ckf-j-11-0-UI.s1 /CLONE=UI-R-DN1-ckf-j-11-0-UI /FEA=EST /CNT=10 /TID=Rn.8680.1 /TIER=Stack /STK=6 /UG=Rn.8680 /UG_TITLE=ESTs, Weakly similar to T14346 Herc2 protein - mouse (M.musculus) BM386001 0006464 // protein modification process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1374600_at BM986536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM986536 /DB_XREF=gi:19705925 /DB_XREF=EST594130 /CLONE=RGOAD05 /FEA=EST /CNT=10 /TID=Rn.1659.1 /TIER=Stack /STK=6 /UG=Rn.1659 /UG_TITLE=ESTs, Highly similar to HISTONE H4 (R.norvegicus) BM986536 histone cluster 1, H4b Hist1h4b 64627 NM_022686 0001503 // ossification // inferred from electronic annotation /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045653 // negative regulation of megakaryocyte differentiation // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1374601_at BI274482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274482 /DB_XREF=gi:14885435 /DB_XREF=UI-R-CW0-bwj-d-05-0-UI.s1 /CLONE=UI-R-CW0-bwj-d-05-0-UI /FEA=EST /CNT=10 /TID=Rn.23305.1 /TIER=Stack /STK=6 /UG=Rn.23305 /UG_TITLE=ESTs, Moderately similar to A49947 interferon gamma receptor beta subunit - mouse (M.musculus) BI274482 interferon gamma receptor 2 Ifngr2 360697 NM_001108313 0007596 // blood coagulation // inferred from electronic annotation 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1374602_at BF407207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407207 /DB_XREF=gi:11395182 /DB_XREF=UI-R-BJ2-bqw-h-07-0-UI.s1 /CLONE=UI-R-BJ2-bqw-h-07-0-UI /FEA=EST /CNT=10 /TID=Rn.24926.1 /TIER=Stack /STK=6 /UG=Rn.24926 /UG_TITLE=ESTs BF407207 TSPY-like 1 Tspyl1 29544 NM_001013033 0006334 // nucleosome assembly // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1374603_at AA943793 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943793 /DB_XREF=gi:3103709 /DB_XREF=EST199292 /CLONE=RBRAP75 /FEA=EST /CNT=9 /TID=Rn.7640.1 /TIER=Stack /STK=6 /UG=Rn.7640 /UG_TITLE=ESTs, Weakly similar to nuclear receptor-binding SET-domain protein 1 (Mus musculus) (M.musculus) AA943793 SET domain and mariner transposase fusion gene Setmar 500281 XM_001071895 /// XM_001078264 0016568 // chromatin modification // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation 1374604_at BF399504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399504 /DB_XREF=gi:11384512 /DB_XREF=UI-R-CA1-bjb-f-08-0-UI.s1 /CLONE=UI-R-CA1-bjb-f-08-0-UI /FEA=EST /CNT=9 /TID=Rn.18430.1 /TIER=Stack /STK=6 /UG=Rn.18430 /UG_TITLE=ESTs BF399504 major facilitator superfamily domain containing 9 Mfsd9 316356 NM_001108215 0015904 // tetracycline transport // inferred from electronic annotation /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0015520 // tetracycline:hydrogen antiporter activity // inferred from electronic annotation 1374605_at AA818020 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818020 /DB_XREF=gi:4198542 /DB_XREF=UI-R-A0-ah-d-12-0-UI.s1 /CLONE=UI-R-A0-ah-d-12-0-UI /FEA=EST /CNT=9 /TID=Rn.17269.1 /TIER=Stack /STK=6 /UG=Rn.17269 /UG_TITLE=ESTs AA818020 transmembrane protein 161B Tmem161b 309953 XM_001057417 /// XM_226652 1374606_at BF283073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283073 /DB_XREF=gi:11214143 /DB_XREF=EST447664 /CLONE=RGIDX14 /FEA=EST /CNT=9 /TID=Rn.24676.1 /TIER=Stack /STK=6 /UG=Rn.24676 /UG_TITLE=ESTs BF283073 1374607_at AI599854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599854 /DB_XREF=gi:4608902 /DB_XREF=EST251557 /CLONE=REMEM64 /FEA=EST /CNT=9 /TID=Rn.23786.1 /TIER=Stack /STK=6 /UG=Rn.23786 /UG_TITLE=ESTs AI599854 1374608_at BF415553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415553 /DB_XREF=gi:11403542 /DB_XREF=UI-R-CA1-bka-e-06-0-UI.s1 /CLONE=UI-R-CA1-bka-e-06-0-UI /FEA=EST /CNT=9 /TID=Rn.6207.1 /TIER=Stack /STK=6 /UG=Rn.6207 /UG_TITLE=ESTs, Moderately similar to Y218_HUMAN PUTATIVE DEOXYRIBONUCLEASE KIAA0218 (H.sapiens) BF415553 TatD DNase domain containing 2 Tatdn2 500295 NM_001109252 0016888 // endodeoxyribonuclease activity, producing 5'-phosphomonoesters // inferred from electronic annotation 1374609_at AI011183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011183 /DB_XREF=gi:4133371 /DB_XREF=EST205634 /CLONE=ROVAQ52 /FEA=EST /CNT=9 /TID=Rn.26346.1 /TIER=Stack /STK=6 /UG=Rn.26346 /UG_TITLE=ESTs AI011183 1374610_at AI599365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599365 /DB_XREF=gi:4608413 /DB_XREF=EST251068 /CLONE=REMEN38 /FEA=EST /CNT=9 /TID=Rn.19608.1 /TIER=Stack /STK=6 /UG=Rn.19608 /UG_TITLE=ESTs AI599365 1374611_at AW535065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535065 /DB_XREF=gi:7177479 /DB_XREF=UI-R-BS0-aoa-g-12-0-UI.s1 /CLONE=UI-R-BS0-aoa-g-12-0-UI /FEA=EST /CNT=9 /TID=Rn.18270.1 /TIER=Stack /STK=6 /UG=Rn.18270 /UG_TITLE=ESTs AW535065 1374612_at AI170664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170664 /DB_XREF=gi:3710704 /DB_XREF=EST216599 /CLONE=RMUAZ63 /FEA=EST /CNT=9 /TID=Rn.22363.1 /TIER=Stack /STK=6 /UG=Rn.22363 /UG_TITLE=ESTs AI170664 PAP associated domain containing 5 Papd5 307745 NM_001107416 0071044 // histone mRNA catabolic process // not recorded 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1374613_at BE100609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100609 /DB_XREF=gi:8492505 /DB_XREF=UI-R-BJ1-auk-d-06-0-UI.s1 /CLONE=UI-R-BJ1-auk-d-06-0-UI /FEA=EST /CNT=9 /TID=Rn.13909.1 /TIER=Stack /STK=6 /UG=Rn.13909 /UG_TITLE=ESTs BE100609 1374614_at BM385650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385650 /DB_XREF=gi:18185703 /DB_XREF=UI-R-DM1-ckd-n-04-0-UI.s1 /CLONE=UI-R-DM1-ckd-n-04-0-UI /FEA=EST /CNT=9 /TID=Rn.862.1 /TIER=Stack /STK=6 /UG=Rn.862 /UG_TITLE=ESTs BM385650 1374615_at AI175668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175668 /DB_XREF=gi:3726306 /DB_XREF=EST219228 /CLONE=ROVBD49 /FEA=EST /CNT=9 /TID=Rn.18367.1 /TIER=Stack /STK=6 /UG=Rn.18367 /UG_TITLE=ESTs AI175668 1374616_at BM384311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384311 /DB_XREF=gi:18184364 /DB_XREF=UI-R-DY0-ckr-h-04-0-UI.s1 /CLONE=UI-R-DY0-ckr-h-04-0-UI /FEA=EST /CNT=9 /TID=Rn.20280.1 /TIER=Stack /STK=6 /UG=Rn.20280 /UG_TITLE=ESTs, Highly similar to I60125 PDGF receptor beta-like tumor suppressor (H.sapiens) BM384311 platelet-derived growth factor receptor-like Pdgfrl 290771 NM_001011921 0005576 // extracellular region // inferred from electronic annotation 1374617_at AI408791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408791 /DB_XREF=gi:4252295 /DB_XREF=EST237082 /CLONE=RKIDR01 /FEA=EST /CNT=9 /TID=Rn.8514.1 /TIER=Stack /STK=6 /UG=Rn.8514 /UG_TITLE=ESTs, Weakly similar to BDH RAT D-BETA-HYDROXYBUTYRATE DEHYDROGENASE PRECURSOR (R.norvegicus) AI408791 dehydrogenase/reductase (SDR family) member 7B Dhrs7b 287380 NM_001008507 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1374618_at BI279751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279751 /DB_XREF=gi:14927867 /DB_XREF=UI-R-CU0s-cbq-d-01-0-UI.s1 /CLONE=UI-R-CU0s-cbq-d-01-0-UI /FEA=EST /CNT=9 /TID=Rn.16122.1 /TIER=Stack /STK=6 /UG=Rn.16122 /UG_TITLE=ESTs BI279751 1374619_at BM386662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386662 /DB_XREF=gi:18186715 /DB_XREF=UI-R-CN1-cjg-l-01-0-UI.s1 /CLONE=UI-R-CN1-cjg-l-01-0-UI /FEA=EST /CNT=9 /TID=Rn.18571.1 /TIER=Stack /STK=6 /UG=Rn.18571 /UG_TITLE=ESTs BM386662 tumor suppressor candidate 5 Tusc5 360576 NM_001039163 0009607 // response to biotic stimulus // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1374620_at BM392373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392373 /DB_XREF=gi:18192426 /DB_XREF=UI-R-DO1-ckp-p-24-0-UI.s1 /CLONE=UI-R-DO1-ckp-p-24-0-UI /FEA=EST /CNT=9 /TID=Rn.13242.1 /TIER=Stack /STK=6 /UG=Rn.13242 /UG_TITLE=ESTs BM392373 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) Ceacam1 81613 NM_001033860 /// NM_001033861 /// NM_001033862 /// NM_031755 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // inferred from direct assay /// 0043406 // positive regulation of MAP kinase activity // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0019901 // protein kinase binding // inferred from physical interaction 1374621_at AA892987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892987 /DB_XREF=gi:3019866 /DB_XREF=EST196790 /CLONE=RKIBA74 /FEA=EST /CNT=9 /TID=Rn.13462.1 /TIER=Stack /STK=6 /UG=Rn.13462 /UG_TITLE=ESTs, Weakly similar to A55384 transcription factor SL1 (H.sapiens) AA892987 TATA box binding protein (Tbp)-associated factor, RNA polymerase I, C Taf1c 361420 NM_001014155 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374622_at BE107309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107309 /DB_XREF=gi:8499414 /DB_XREF=UI-R-BS1-ays-c-08-0-UI.s1 /CLONE=UI-R-BS1-ays-c-08-0-UI /FEA=EST /CNT=9 /TID=Rn.9546.1 /TIER=Stack /STK=6 /UG=Rn.9546 /UG_TITLE=ESTs BE107309 1374623_at BF399447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399447 /DB_XREF=gi:11384455 /DB_XREF=UI-R-CA1-bjb-j-23-0-UI.s1 /CLONE=UI-R-CA1-bjb-j-23-0-UI /FEA=EST /CNT=9 /TID=Rn.15802.1 /TIER=Stack /STK=6 /UG=Rn.15802 /UG_TITLE=ESTs BF399447 1374624_at AI179979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179979 /DB_XREF=gi:3730617 /DB_XREF=EST223710 /CLONE=RSPCO44 /FEA=EST /CNT=9 /TID=Rn.7845.1 /TIER=Stack /STK=6 /UG=Rn.7845 /UG_TITLE=ESTs AI179979 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11) Galnt11 311952 NM_199393 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1374625_at AI176616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176616 /DB_XREF=gi:3727254 /DB_XREF=EST220205 /CLONE=ROVBU57 /FEA=EST /CNT=9 /TID=Rn.11980.1 /TIER=Stack /STK=6 /UG=Rn.11980 /UG_TITLE=ESTs AI176616 hairy and enhancer of split 6 (Drosophila) Hes6 316626 NM_001013179 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003712 // transcription cofactor activity // inferred from electronic annotation /// 0003712 // transcription cofactor activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1374626_at BG371585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371585 /DB_XREF=gi:13268122 /DB_XREF=UI-R-CW0-bvx-b-10-0-UI.s1 /CLONE=UI-R-CW0-bvx-b-10-0-UI /FEA=EST /CNT=9 /TID=Rn.17847.1 /TIER=Stack /STK=6 /UG=Rn.17847 /UG_TITLE=ESTs, Weakly similar to GPV RAT PLATELET GLYCOPROTEIN V PRECURSOR (R.norvegicus) BG371585 leucine-rich alpha-2-glycoprotein 1 Lrg1 367455 NM_001009717 0050873 // brown fat cell differentiation // not recorded 0005634 // nucleus // not recorded /// 0005783 // endoplasmic reticulum // not recorded 0005515 // protein binding // inferred from electronic annotation 1374627_at BF283727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283727 /DB_XREF=gi:11214797 /DB_XREF=EST448318 /CLONE=RGIEG04 /FEA=EST /CNT=9 /TID=Rn.35673.1 /TIER=Stack /STK=6 /UG=Rn.35673 /UG_TITLE=ESTs BF283727 1374628_at AI232098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232098 /DB_XREF=gi:4135709 /DB_XREF=EST228786 /CLONE=RKIBW81 /FEA=EST /CNT=9 /TID=Rn.6746.1 /TIER=Stack /STK=6 /UG=Rn.6746 /UG_TITLE=ESTs, Moderately similar to QUINONE OXIDOREDUCTASE (M.musculus) AI232098 crystallin, zeta Cryz 362061 NM_001012183 0008152 // metabolic process // inferred from electronic annotation /// 0042178 // xenobiotic catabolic process // not recorded /// 0042178 // xenobiotic catabolic process // inferred from sequence or structural similarity /// 0042178 // xenobiotic catabolic process // inferred from electronic annotation /// 0051289 // protein homotetramerization // inferred from electronic annotation /// 0051289 // protein homotetramerization // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0003730 // mRNA 3'-UTR binding // not recorded /// 0003730 // mRNA 3'-UTR binding // inferred from sequence or structural similarity /// 0003730 // mRNA 3'-UTR binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003960 // NADPH:quinone reductase activity // not recorded /// 0003960 // NADPH:quinone reductase activity // inferred from sequence or structural similarity /// 0003960 // NADPH:quinone reductase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0070402 // NADPH binding // not recorded /// 0070402 // NADPH binding // inferred from sequence or structural similarity /// 0070402 // NADPH binding // inferred from electronic annotation /// 0070404 // NADH binding // not recorded /// 0070404 // NADH binding // inferred from sequence or structural similarity 1374629_at AI713147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI713147 /DB_XREF=gi:5016947 /DB_XREF=UI-R-Y0-aba-g-08-0-UI.s1 /CLONE=UI-R-Y0-aba-g-08-0-UI /FEA=EST /CNT=9 /TID=Rn.26479.1 /TIER=Stack /STK=6 /UG=Rn.26479 /UG_TITLE=ESTs AI713147 mediator complex subunit 8 Med8 362575 NM_001108673 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0016592 // mediator complex // inferred from electronic annotation /// 0016592 // mediator complex // not recorded 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation 1374630_at AI234249 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234249 /DB_XREF=gi:3818129 /DB_XREF=EST230937 /CLONE=RLUCY45 /FEA=EST /CNT=9 /TID=Rn.25003.1 /TIER=Stack /STK=6 /UG=Rn.25003 /UG_TITLE=ESTs, Weakly similar to intracellular chloride ion channel protein p64H1 (Rattus norvegicus) (R.norvegicus) AI234249 chloride intracellular channel 3 Clic3 296566 NM_001013080 0006821 // chloride transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0005247 // voltage-gated chloride channel activity // inferred from electronic annotation 1374631_at AW914202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW914202 /DB_XREF=gi:8079876 /DB_XREF=EST345506 /CLONE=RGIAB77 /FEA=EST /CNT=9 /TID=Rn.23934.1 /TIER=Stack /STK=6 /UG=Rn.23934 /UG_TITLE=ESTs AW914202 oligonucleotide/oligosaccharide-binding fold containing 2B Obfc2b 362813 NM_001034939 0000724 // double-strand break repair via homologous recombination // not recorded /// 0000724 // double-strand break repair via homologous recombination // inferred from sequence or structural similarity /// 0000724 // double-strand break repair via homologous recombination // inferred from electronic annotation /// 0006281 // DNA repair // not recorded /// 0006281 // DNA repair // inferred from sequence or structural similarity /// 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from sequence or structural similarity /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010212 // response to ionizing radiation // not recorded /// 0010212 // response to ionizing radiation // inferred from sequence or structural similarity /// 0010212 // response to ionizing radiation // inferred from electronic annotation /// 0031576 // G2/M transition checkpoint // not recorded /// 0031576 // G2/M transition checkpoint // inferred from sequence or structural similarity /// 0031576 // G2/M transition checkpoint // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0070876 // SOSS complex // not recorded /// 0070876 // SOSS complex // inferred from sequence or structural similarity /// 0070876 // SOSS complex // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // not recorded /// 0003697 // single-stranded DNA binding // inferred from sequence or structural similarity /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374632_at AI232697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232697 /DB_XREF=gi:3816577 /DB_XREF=EST229385 /CLONE=RKICF28 /FEA=EST /CNT=9 /TID=Rn.19923.1 /TIER=Stack /STK=6 /UG=Rn.19923 /UG_TITLE=ESTs, Highly similar to KIAA0585 protein (H.sapiens) AI232697 jumonji domain containing 6 Jmjd6 360665 NM_001012143 0001568 // blood vessel development // not recorded /// 0001822 // kidney development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007165 // signal transduction // not recorded /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0008380 // RNA splicing // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0018395 // peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine // not recorded /// 0018395 // peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0033077 // T cell differentiation in thymus // not recorded /// 0042116 // macrophage activation // not recorded /// 0043277 // apoptotic cell clearance // not recorded /// 0043654 // recognition of apoptotic cell // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048024 // regulation of nuclear mRNA splicing, via spliceosome // not recorded /// 0048821 // erythrocyte development // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // not recorded /// 0070078 // histone H3-R2 demethylation // not recorded /// 0070079 // histone H4-R3 demethylation // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0004872 // receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0033746 // histone demethylase activity (H3-R2 specific) // not recorded /// 0033746 // histone demethylase activity (H3-R2 specific) // inferred from sequence or structural similarity /// 0033749 // histone demethylase activity (H4-R3 specific) // not recorded /// 0033749 // histone demethylase activity (H4-R3 specific) // inferred from sequence or structural similarity /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070815 // peptidyl-lysine 5-dioxygenase activity // not recorded /// 0070815 // peptidyl-lysine 5-dioxygenase activity // inferred from sequence or structural similarity 1374633_at BF284700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284700 /DB_XREF=gi:11215770 /DB_XREF=EST449291 /CLONE=RGIEV11 /FEA=EST /CNT=8 /TID=Rn.23149.1 /TIER=Stack /STK=6 /UG=Rn.23149 /UG_TITLE=ESTs BF284700 peptidase M20 domain containing 2 Pm20d2 313130 NM_001107922 0008152 // metabolic process // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1374634_at AA818131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818131 /DB_XREF=gi:4198645 /DB_XREF=UI-R-A0-am-h-12-0-UI.s1 /CLONE=UI-R-A0-am-h-12-0-UI /FEA=EST /CNT=8 /TID=Rn.16460.1 /TIER=Stack /STK=6 /UG=Rn.16460 /UG_TITLE=ESTs AA818131 PIH1 domain containing 2 Pih1d2 315645 NM_001191793 /// XM_001067688 /// XM_236221 1374635_at AW527151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527151 /DB_XREF=gi:7169565 /DB_XREF=UI-R-BO1-ajm-b-04-0-UI.s1 /CLONE=UI-R-BO1-ajm-b-04-0-UI /FEA=EST /CNT=8 /TID=Rn.24184.1 /TIER=Stack /STK=6 /UG=Rn.24184 /UG_TITLE=ESTs AW527151 Hypothetical protein LOC689663 LOC689663 689663 XM_001071577 /// XM_002727229 1374636_at BI298596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298596 /DB_XREF=gi:14974876 /DB_XREF=UI-R-CV2-chl-c-12-0-UI.s1 /CLONE=UI-R-CV2-chl-c-12-0-UI /FEA=EST /CNT=8 /TID=Rn.18042.1 /TIER=Stack /STK=6 /UG=Rn.18042 /UG_TITLE=ESTs BI298596 PHD finger protein 17 Phf17 310352 NM_001107670 0043966 // histone H3 acetylation // not recorded /// 0043981 // histone H4-K5 acetylation // not recorded /// 0043982 // histone H4-K8 acetylation // not recorded /// 0043983 // histone H4-K12 acetylation // not recorded /// 0043984 // histone H4-K16 acetylation // not recorded 0000123 // histone acetyltransferase complex // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374637_at BE109510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109510 /DB_XREF=gi:8501615 /DB_XREF=UI-R-BJ1-avp-a-06-0-UI.s1 /CLONE=UI-R-BJ1-avp-a-06-0-UI /FEA=EST /CNT=8 /TID=Rn.19077.1 /TIER=Stack /STK=6 /UG=Rn.19077 /UG_TITLE=ESTs BE109510 transmembrane and coiled-coil domains 6 Tmco6 291661 NM_001106154 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 1374638_at AI012951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012951 /DB_XREF=gi:4133712 /DB_XREF=EST207402 /CLONE=RSPBA27 /FEA=EST /CNT=8 /TID=Rn.12443.1 /TIER=Stack /STK=6 /UG=Rn.12443 /UG_TITLE=ESTs, Moderately similar to PEXD_HUMAN PEROXISOMAL MEMBRANE PROTEIN PEX13 (H.sapiens) AI012951 peroxisomal biogenesis factor 13 Pex13 305581 NM_001107242 0001561 // fatty acid alpha-oxidation // not recorded /// 0001764 // neuron migration // not recorded /// 0001967 // suckling behavior // not recorded /// 0007626 // locomotory behavior // not recorded /// 0016560 // protein import into peroxisome matrix, docking // inferred from electronic annotation /// 0016560 // protein import into peroxisome matrix, docking // not recorded /// 0021795 // cerebral cortex cell migration // not recorded /// 0060152 // microtubule-based peroxisome localization // not recorded 0005624 // membrane fraction // not recorded /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation /// 0005777 // peroxisome // not recorded /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // not recorded /// 0005779 // integral to peroxisomal membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1374639_at AA800800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800800 /DB_XREF=gi:2863755 /DB_XREF=EST190297 /CLONE=RLUAL59 /FEA=EST /CNT=8 /TID=Rn.1945.1 /TIER=Stack /STK=6 /UG=Rn.1945 /UG_TITLE=ESTs AA800800 Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans) Smg6 287522 NM_001105808 0000723 // telomere maintenance // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042162 // telomeric DNA binding // not recorded 1374640_at BE112158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112158 /DB_XREF=gi:8504263 /DB_XREF=UI-R-BJ1-avg-d-02-0-UI.s1 /CLONE=UI-R-BJ1-avg-d-02-0-UI /FEA=EST /CNT=8 /TID=Rn.12625.1 /TIER=Stack /STK=6 /UG=Rn.12625 /UG_TITLE=ESTs BE112158 thioesterase superfamily member 4 Them4 361992 NM_001025017 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 1374641_at BF397653 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397653 /DB_XREF=gi:11382637 /DB_XREF=UI-R-BS2-bed-a-09-0-UI.s1 /CLONE=UI-R-BS2-bed-a-09-0-UI /FEA=EST /CNT=8 /TID=Rn.40613.1 /TIER=Stack /STK=6 /UG=Rn.40613 /UG_TITLE=ESTs BF397653 lemur tyrosine kinase 2 Lmtk2 304286 NM_001137641 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // not recorded 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004864 // phosphoprotein phosphatase inhibitor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1374642_at BI296003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296003 /DB_XREF=gi:14960013 /DB_XREF=UI-R-DK0-cfd-c-06-0-UI.s1 /CLONE=UI-R-DK0-cfd-c-06-0-UI /FEA=EST /CNT=8 /TID=Rn.6243.1 /TIER=Stack /STK=6 /UG=Rn.6243 /UG_TITLE=ESTs BI296003 zinc finger protein 64 Zfp64 311661 NM_001012093 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1374643_at BF288461 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288461 /DB_XREF=gi:11219531 /DB_XREF=EST453052 /CLONE=RGIGU07 /FEA=EST /CNT=8 /TID=Rn.30629.1 /TIER=Stack /STK=6 /UG=Rn.30629 /UG_TITLE=ESTs BF288461 FAT tumor suppressor homolog 4 (Drosophila) Fat4 310341 NM_001191705 /// XM_001070073 /// XM_227060 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1374644_at BM386365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386365 /DB_XREF=gi:18186418 /DB_XREF=UI-R-CN1-cjf-d-04-0-UI.s1 /CLONE=UI-R-CN1-cjf-d-04-0-UI /FEA=EST /CNT=8 /TID=Rn.14776.1 /TIER=Stack /STK=6 /UG=Rn.14776 /UG_TITLE=ESTs BM386365 1374645_at AW535233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535233 /DB_XREF=gi:7177608 /DB_XREF=UI-R-C4-alu-c-10-0-UI.s1 /CLONE=UI-R-C4-alu-c-10-0-UI /FEA=EST /CNT=8 /TID=Rn.23413.1 /TIER=Stack /STK=6 /UG=Rn.23413 /UG_TITLE=ESTs AW535233 1374646_at BM387173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387173 /DB_XREF=gi:18187226 /DB_XREF=UI-R-CN1-cji-l-05-0-UI.s1 /CLONE=UI-R-CN1-cji-l-05-0-UI /FEA=EST /CNT=8 /TID=Rn.8508.1 /TIER=Stack /STK=6 /UG=Rn.8508 /UG_TITLE=ESTs BM387173 casein kinase 1, alpha 1 Csnk1a1 113927 NM_053615 0000902 // cell morphogenesis // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0001948 // glycoprotein binding // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0051219 // phosphoprotein binding // inferred from direct assay 1374647_at BI299718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299718 /DB_XREF=gi:14975998 /DB_XREF=UI-R-CV2-chw-d-12-0-UI.s1 /CLONE=UI-R-CV2-chw-d-12-0-UI /FEA=EST /CNT=8 /TID=Rn.3921.1 /TIER=Stack /STK=6 /UG=Rn.3921 /UG_TITLE=ESTs BI299718 round spermatid basic protein 1 Rsbn1 310749 NM_001191710 /// XM_001065582 /// XM_227540 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1374648_at BM390626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390626 /DB_XREF=gi:18190679 /DB_XREF=UI-R-CN1-cjr-c-16-0-UI.s1 /CLONE=UI-R-CN1-cjr-c-16-0-UI /FEA=EST /CNT=8 /TID=Rn.2051.1 /TIER=Stack /STK=6 /UG=Rn.2051 /UG_TITLE=ESTs BM390626 G protein-coupled receptor 155 Gpr155 311730 NM_001107811 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1374649_at BG380629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380629 /DB_XREF=gi:13305101 /DB_XREF=UI-R-CT0-btz-e-09-0-UI.s1 /CLONE=UI-R-CT0-btz-e-09-0-UI /FEA=EST /CNT=8 /TID=Rn.17872.1 /TIER=Stack /STK=6 /UG=Rn.17872 /UG_TITLE=ESTs, Weakly similar to phorbol ester and DAG binding domain (Caenorhabditis elegans) (C.elegans) BG380629 RAS guanyl releasing protein 2 (calcium and DAG-regulated) Rasgrp2 361714 NM_001082977 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374650_at BM392374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392374 /DB_XREF=gi:18192427 /DB_XREF=UI-R-EB1-clf-a-02-0-UI.s1 /CLONE=UI-R-EB1-clf-a-02-0-UI /FEA=EST /CNT=8 /TID=Rn.8730.1 /TIER=Stack /STK=6 /UG=Rn.8730 /UG_TITLE=ESTs BM392374 neural precursor cell expressed, developmentally down-regulated 9 Nedd9 291044 NM_001011922 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374651_at BM386987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386987 /DB_XREF=gi:18187040 /DB_XREF=UI-R-CN1-cji-i-07-0-UI.s1 /CLONE=UI-R-CN1-cji-i-07-0-UI /FEA=EST /CNT=8 /TID=Rn.48851.1 /TIER=Stack /STK=6 /UG=Rn.48851 /UG_TITLE=ESTs, Moderately similar to C215_HUMAN 258.1 KDA PROTEIN C21ORF5 (H.sapiens) BM386987 dopey family member 2 Dopey2 304077 NM_001191660 /// XM_001055500 /// XM_002724703 /// XM_002727866 /// XM_221640 1374652_at BF285372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285372 /DB_XREF=gi:11216442 /DB_XREF=EST449963 /CLONE=RGIFF12 /FEA=EST /CNT=8 /TID=Rn.16305.1 /TIER=Stack /STK=6 /UG=Rn.16305 /UG_TITLE=ESTs, Moderately similar to A58532 glial cell membrane glycoprotein LIG-1 precursor - mouse (M.musculus) BF285372 1374653_at BF413204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413204 /DB_XREF=gi:11401193 /DB_XREF=UI-R-BT1-bny-a-04-0-UI.s1 /CLONE=UI-R-BT1-bny-a-04-0-UI /FEA=EST /CNT=8 /TID=Rn.17259.1 /TIER=Stack /STK=6 /UG=Rn.17259 /UG_TITLE=ESTs BF413204 family with sequence similarity 73, member B Fam73b 296623 NM_001106566 1374654_at BE109603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109603 /DB_XREF=gi:8501708 /DB_XREF=UI-R-BJ1-avq-a-09-0-UI.s1 /CLONE=UI-R-BJ1-avq-a-09-0-UI /FEA=EST /CNT=8 /TID=Rn.21800.1 /TIER=Stack /STK=6 /UG=Rn.21800 /UG_TITLE=ESTs, Highly similar to FW1A_HUMAN F-BOXWD-REPEAT PROTEIN 1B (F-BOX AND WD-REPEATS PROTEIN BETA-TRCP) (E3RSIKAPPAB) (PIKAPPABALPHA-E3 RECEPTOR SUBUNIT) (H.sapiens) BE109603 beta-transducin repeat containing Btrc 361765 NM_001007148 0030163 // protein catabolic process // inferred from electronic annotation /// 0030163 // protein catabolic process // not recorded /// 0033598 // mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0033598 // mammary gland epithelial cell proliferation // not recorded /// 0043122 // regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043122 // regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060444 // branching involved in mammary gland duct morphogenesis // not recorded /// 0061136 // regulation of proteasomal protein catabolic process // inferred from electronic annotation /// 0061136 // regulation of proteasomal protein catabolic process // not recorded /// 0071407 // cellular response to organic cyclic substance // inferred from electronic annotation /// 0071407 // cellular response to organic cyclic substance // not recorded 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374655_at BG378095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378095 /DB_XREF=gi:13302567 /DB_XREF=UI-R-CT0-bvn-h-04-0-UI.s1 /CLONE=UI-R-CT0-bvn-h-04-0-UI /FEA=EST /CNT=8 /TID=Rn.47673.1 /TIER=Stack /STK=6 /UG=Rn.47673 /UG_TITLE=ESTs BG378095 1374656_at AA851443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851443 /DB_XREF=gi:2938983 /DB_XREF=EST194211 /CLONE=RPLAG64 /FEA=EST /CNT=8 /TID=Rn.6753.1 /TIER=Stack /STK=6 /UG=Rn.6753 /UG_TITLE=ESTs AA851443 exocyst complex component 3 Exoc3 252881 NM_001024964 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 1374657_at AA848437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848437 /DB_XREF=gi:4131641 /DB_XREF=EST191197 /CLONE=RKIAC36 /FEA=EST /CNT=8 /TID=Rn.6362.1 /TIER=Stack /STK=6 /UG=Rn.6362 /UG_TITLE=ESTs AA848437 ankyrin repeat and sterile alpha motif domain containing 4B Anks4b 687561 NM_001127650 1374658_at AI176974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176974 /DB_XREF=gi:3727612 /DB_XREF=EST220580 /CLONE=ROVBZ29 /FEA=EST /CNT=8 /TID=Rn.50936.1 /TIER=Stack /STK=6 /UG=Rn.50936 /UG_TITLE=ESTs AI176974 IQ motif and Sec7 domain 2 Iqsec2 317433 XR_008556 1374659_at AI227963 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227963 /DB_XREF=gi:3811850 /DB_XREF=EST224658 /CLONE=RBRCO13 /FEA=EST /CNT=8 /TID=Rn.7511.1 /TIER=Stack /STK=6 /UG=Rn.7511 /UG_TITLE=ESTs AI227963 cyclic AMP-regulated phosphoprotein Arpp-21 363153 NM_001135045 /// NM_001135046 0034605 // cellular response to heat // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation 1374660_at BM385193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385193 /DB_XREF=gi:18185246 /DB_XREF=UI-R-CN1-cjs-d-02-0-UI.s2 /CLONE=UI-R-CN1-cjs-d-02-0-UI /FEA=EST /CNT=8 /TID=Rn.6503.1 /TIER=Stack /STK=6 /UG=Rn.6503 /UG_TITLE=ESTs, Weakly similar to H21P03.2.p (Caenorhabditis elegans) (C.elegans) BM385193 non-SMC element 4 homolog A (S. cerevisiae) Nsmce4a 293528 NM_001106301 1374661_at AW524523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524523 /DB_XREF=gi:7166908 /DB_XREF=UI-R-BO0-ahz-d-10-0-UI.s1 /CLONE=UI-R-BO0-ahz-d-10-0-UI /FEA=EST /CNT=8 /TID=Rn.11778.1 /TIER=Stack /STK=6 /UG=Rn.11778 /UG_TITLE=ESTs, Weakly similar to ALDEHYDE DEHYDROGENASE, CYTOSOLIC 2 (R.norvegicus) AW524523 aldehyde dehydrogenase 16 family, member A1 Aldh16a1 361571 NM_001033706 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1374662_at AA891848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891848 /DB_XREF=gi:3018727 /DB_XREF=EST195651 /CLONE=RKIAH61 /FEA=EST /CNT=8 /TID=Rn.3001.2 /TIER=Stack /STK=6 /UG=Rn.3001 /LL=24248 /UG_GENE=Cat /UG_TITLE=Catalase AA891848 solute carrier family 35 (CMP-sialic acid transporter), member A1 Slc35a1 313139 NM_001107924 0006810 // transport // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0015780 // nucleotide-sugar transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005338 // nucleotide-sugar transmembrane transporter activity // inferred from electronic annotation /// 0005351 // sugar:hydrogen symporter activity // inferred from electronic annotation 1374663_at AW526756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526756 /DB_XREF=gi:7169170 /DB_XREF=UI-R-BT1-ake-f-09-0-UI.s1 /CLONE=UI-R-BT1-ake-f-09-0-UI /FEA=EST /CNT=8 /TID=Rn.19405.1 /TIER=Stack /STK=6 /UG=Rn.19405 /UG_TITLE=ESTs AW526756 1374664_at AI235511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235511 /DB_XREF=gi:3829017 /DB_XREF=EST232073 /CLONE=ROVCS87 /FEA=EST /CNT=8 /TID=Rn.39153.1 /TIER=Stack /STK=6 /UG=Rn.39153 /UG_TITLE=ESTs, Weakly similar to zinc-finger protein 94 (R.norvegicus) AI235511 zinc finger protein 787 Znf787 365176 NM_001108904 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1374665_at BG057541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG057541 /DB_XREF=gi:12523134 /DB_XREF=nag14c02.x1 /CLONE=IMAGE:4176003 /FEA=EST /CNT=8 /TID=Rn.53.1 /TIER=Stack /STK=6 /UG=Rn.53 /UG_TITLE=ESTs, Weakly similar to GEM4_HUMAN COMPONENT OF GEMS 4 (GEMIN4) (P97) (H.sapiens) BG057541 gem (nuclear organelle) associated protein 4 Gemin4 497958 NM_001109037 0000387 // spliceosomal snRNP assembly // not recorded 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded 1374666_at BI298206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298206 /DB_XREF=gi:14974486 /DB_XREF=UI-R-CV2-chg-e-11-0-UI.s1 /CLONE=UI-R-CV2-chg-e-11-0-UI /FEA=EST /CNT=8 /TID=Rn.23577.1 /TIER=Stack /STK=6 /UG=Rn.23577 /UG_TITLE=ESTs BI298206 1374667_at AW433942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433942 /DB_XREF=gi:6965249 /DB_XREF=UI-R-BJ0p-afn-d-04-0-UI.s1 /CLONE=UI-R-BJ0p-afn-d-04-0-UI /FEA=EST /CNT=8 /TID=Rn.23465.1 /TIER=Stack /STK=6 /UG=Rn.23465 /UG_TITLE=ESTs AW433942 0016043 // cellular component organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation 1374668_at AI230180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230180 /DB_XREF=gi:3814067 /DB_XREF=EST226875 /CLONE=REMCT31 /FEA=EST /CNT=8 /TID=Rn.24287.1 /TIER=Stack /STK=6 /UG=Rn.24287 /UG_TITLE=ESTs, Weakly similar to T31425 C-terminal domain-binding protein rA4, splice form 2 - rat (fragment) (R.norvegicus) AI230180 splicing factor 3a, subunit 1 Sf3a1 305479 NM_001107235 0000398 // nuclear mRNA splicing, via spliceosome // not recorded /// 0006396 // RNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // not recorded /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // not recorded /// 0005681 // spliceosomal complex // not recorded /// 0005684 // U2-type spliceosomal complex // not recorded /// 0005730 // nucleolus // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // not recorded 1374669_at AI600234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600234 /DB_XREF=gi:4609282 /DB_XREF=EST251937 /CLONE=REMEN69 /FEA=EST /CNT=8 /TID=Rn.40203.1 /TIER=Stack /STK=6 /UG=Rn.40203 /UG_TITLE=ESTs AI600234 bromodomain and WD repeat domain containing 2 Brwd2 309016 XM_001080483 /// XM_219377 1374670_at BM384543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384543 /DB_XREF=gi:18184596 /DB_XREF=UI-R-CN1-cjs-n-09-0-UI.s2 /CLONE=UI-R-CN1-cjs-n-09-0-UI /FEA=EST /CNT=8 /TID=Rn.14614.1 /TIER=Stack /STK=6 /UG=Rn.14614 /UG_TITLE=ESTs, Weakly similar to F16H11.1.p (Caenorhabditis elegans) (C.elegans) BM384543 1374671_at BI290057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290057 /DB_XREF=gi:14948267 /DB_XREF=UI-R-DK0-cfr-d-01-0-UI.s1 /CLONE=UI-R-DK0-cfr-d-01-0-UI /FEA=EST /CNT=8 /TID=Rn.9031.1 /TIER=Stack /STK=6 /UG=Rn.9031 /UG_TITLE=ESTs, Highly similar to T08794 hypothetical protein DKFZp586G0522.1 (H.sapiens) BI290057 Traf3 interacting protein 2 Traf3ip2 361857 NM_001044248 0001783 // B cell apoptosis // inferred from electronic annotation /// 0001783 // B cell apoptosis // not recorded /// 0006959 // humoral immune response // inferred from electronic annotation /// 0006959 // humoral immune response // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0048305 // immunoglobulin secretion // inferred from electronic annotation /// 0048305 // immunoglobulin secretion // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374672_at BI293060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293060 /DB_XREF=gi:14954193 /DB_XREF=UI-R-DK0-cdj-h-09-0-UI.s1 /CLONE=UI-R-DK0-cdj-h-09-0-UI /FEA=EST /CNT=8 /TID=Rn.3434.1 /TIER=Stack /STK=6 /UG=Rn.3434 /UG_TITLE=ESTs, Weakly similar to JC5399 dual leucine zipper kinase (R.norvegicus) BI293060 TNNI3 interacting kinase Tnni3k 295531 NM_181769 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0031013 // troponin I binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1374673_at BI292547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292547 /DB_XREF=gi:14953151 /DB_XREF=UI-R-DO0-ciw-a-22-0-UI.s1 /CLONE=UI-R-DO0-ciw-a-22-0-UI /FEA=EST /CNT=8 /TID=Rn.32961.1 /TIER=Stack /STK=6 /UG=Rn.32961 /UG_TITLE=ESTs BI292547 1374674_at AW528792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528792 /DB_XREF=gi:7171206 /DB_XREF=UI-R-BT1-aki-f-03-0-UI.s1 /CLONE=UI-R-BT1-aki-f-03-0-UI /FEA=EST /CNT=8 /TID=Rn.13269.1 /TIER=Stack /STK=6 /UG=Rn.13269 /UG_TITLE=ESTs AW528792 1374675_at BG374992 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374992 /DB_XREF=gi:13299464 /DB_XREF=UI-R-CV1-bsw-h-03-0-UI.s1 /CLONE=UI-R-CV1-bsw-h-03-0-UI /FEA=EST /CNT=8 /TID=Rn.8151.1 /TIER=Stack /STK=6 /UG=Rn.8151 /UG_TITLE=ESTs BG374992 1374676_at AA818911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818911 /DB_XREF=gi:4227583 /DB_XREF=UI-R-A0-as-a-10-0-UI.s1 /CLONE=UI-R-A0-as-a-10-0-UI /FEA=EST /CNT=8 /TID=Rn.16561.1 /TIER=Stack /STK=6 /UG=Rn.16561 /UG_TITLE=ESTs AA818911 1374677_at AI577508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577508 /DB_XREF=gi:4561884 /DB_XREF=UI-R-Y0-vj-f-06-0-UI.s1 /CLONE=UI-R-Y0-vj-f-06-0-UI /FEA=EST /CNT=8 /TID=Rn.19158.1 /TIER=Stack /STK=6 /UG=Rn.19158 /UG_TITLE=ESTs, Highly similar to 2122208A adenylosuccinate synthetase:ISOTYPE=muscle (M.musculus) AI577508 similar to Adenylosuccinate synthetase isozyme 1 (Adenylosuccinate synthetase, muscle isozyme) (IMP--aspartate ligase 1) (AdSS 1) (AMPSase 1) LOC684425 684425 XM_001072867 0006164 // purine nucleotide biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004019 // adenylosuccinate synthase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1374678_at BE109578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109578 /DB_XREF=gi:8501683 /DB_XREF=UI-R-BJ1-avp-g-05-0-UI.s1 /CLONE=UI-R-BJ1-avp-g-05-0-UI /FEA=EST /CNT=8 /TID=Rn.40.1 /TIER=Stack /STK=6 /UG=Rn.40 /UG_TITLE=ESTs, Weakly similar to semaphorin W (R.norvegicus) BE109578 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B Sema4b 293042 NM_001170462 0007275 // multicellular organismal development // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1374679_at AI576009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576009 /DB_XREF=gi:4560385 /DB_XREF=UI-R-G0-ur-f-06-0-UI.s2 /CLONE=UI-R-G0-ur-f-06-0-UI /FEA=EST /CNT=8 /TID=Rn.38891.1 /TIER=Stack /STK=6 /UG=Rn.38891 /UG_TITLE=ESTs, Weakly similar to T14766 hypothetical protein DKFZp564K247.1 (H.sapiens) AI576009 HIG1 hypoxia inducible domain family, member 1B Higd1b 287738 NM_001105844 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1374680_at AA858731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858731 /DB_XREF=gi:4228924 /DB_XREF=UI-R-A0-be-c-07-0-UI.s1 /CLONE=UI-R-A0-be-c-07-0-UI /FEA=EST /CNT=8 /TID=Rn.2371.1 /TIER=Stack /STK=6 /UG=Rn.2371 /UG_TITLE=ESTs AA858731 Retinol dehydrogenase 13 (all-trans/9-cis) Rdh13 361504 NM_001108468 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1374681_at AW914967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW914967 /DB_XREF=gi:8080650 /DB_XREF=EST346271 /CLONE=RGIBM91 /FEA=EST /CNT=8 /TID=Rn.7552.1 /TIER=Stack /STK=6 /UG=Rn.7552 /UG_TITLE=ESTs AW914967 1374682_at BM383170 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383170 /DB_XREF=gi:18183223 /DB_XREF=UI-R-DS0-cje-p-04-0-UI.s1 /CLONE=UI-R-DS0-cje-p-04-0-UI /FEA=EST /CNT=8 /TID=Rn.30532.1 /TIER=Stack /STK=6 /UG=Rn.30532 /UG_TITLE=ESTs BM383170 SRY (sex determining region Y)-box 13 Sox13 289026 NM_001105952 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1374683_at AA850867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850867 /DB_XREF=gi:2938407 /DB_XREF=EST193635 /CLONE=ROVAL74 /FEA=EST /CNT=8 /TID=Rn.7061.1 /TIER=Stack /STK=6 /UG=Rn.7061 /UG_TITLE=ESTs, Moderately similar to SGCG_MOUSE Gamma-sarcoglycan (Gamma-SG) (35 kDa dystrophin-associated glycoprotein) (35DAG) (M.musculus) AA850867 sarcoglycan, gamma (dystrophin-associated glycoprotein) Sgcg 305941 NM_001006993 0007010 // cytoskeleton organization // inferred from electronic annotation 0016012 // sarcoglycan complex // inferred from electronic annotation /// 0016012 // sarcoglycan complex // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374684_at AI228978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228978 /DB_XREF=gi:3812865 /DB_XREF=EST225673 /CLONE=RBRDC46 /FEA=EST /CNT=8 /TID=Rn.16704.1 /TIER=Stack /STK=6 /UG=Rn.16704 /UG_TITLE=ESTs AI228978 1374685_at BE117446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117446 /DB_XREF=gi:8509551 /DB_XREF=UI-R-BS1-ayi-h-06-0-UI.s1 /CLONE=UI-R-BS1-ayi-h-06-0-UI /FEA=EST /CNT=8 /TID=Rn.44741.1 /TIER=Stack /STK=6 /UG=Rn.44741 /UG_TITLE=ESTs BE117446 1374686_at BF283406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283406 /DB_XREF=gi:11214476 /DB_XREF=EST447997 /CLONE=RGIEB56 /FEA=EST /CNT=8 /TID=Rn.13067.1 /TIER=Stack /STK=6 /UG=Rn.13067 /UG_TITLE=ESTs, Weakly similar to zinc transport protein ZnT-1 (R.norvegicus) BF283406 solute carrier family 30 (zinc transporter), member 7 Slc30a7 310801 NM_001191715 /// XM_001073594 /// XM_227612 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006829 // zinc ion transport // inferred from electronic annotation /// 0006829 // zinc ion transport // not recorded /// 0015674 // di-, tri-valent inorganic cation transport // not recorded /// 0032119 // sequestering of zinc ion // inferred from electronic annotation /// 0032119 // sequestering of zinc ion // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0071577 // zinc ion transmembrane transport // not recorded 0000139 // Golgi membrane // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0031982 // vesicle // inferred from electronic annotation /// 0031982 // vesicle // not recorded /// 0044444 // cytoplasmic part // not recorded /// 0044444 // cytoplasmic part // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // traceable author statement /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005385 // zinc ion transmembrane transporter activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008324 // cation transmembrane transporter activity // inferred from electronic annotation 1374687_at BF283386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283386 /DB_XREF=gi:11214456 /DB_XREF=EST447977 /CLONE=RGIEB30 /FEA=EST /CNT=8 /TID=Rn.9275.1 /TIER=Stack /STK=6 /UG=Rn.9275 /UG_TITLE=ESTs BF283386 1374688_at AA945696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945696 /DB_XREF=gi:3105612 /DB_XREF=EST201195 /CLONE=RLUAS04 /FEA=EST /CNT=8 /TID=Rn.7894.1 /TIER=Stack /STK=6 /UG=Rn.7894 /UG_TITLE=ESTs AA945696 1374689_at AI102103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102103 /DB_XREF=gi:4134060 /DB_XREF=EST211392 /CLONE=RBRBY91 /FEA=EST /CNT=8 /TID=Rn.14991.2 /TIER=Stack /STK=6 /UG=Rn.14991 /LL=81747 /UG_GENE=Pik4cb /UG_TITLE=phosphatidylinositol 4-kinase AI102103 phosphatidylinositol 4-kinase, catalytic, beta Pi4kb 81747 NM_031083 0007165 // signal transduction // traceable author statement /// 0046854 // phosphoinositide phosphorylation // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030867 // rough endoplasmic reticulum membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004428 // inositol or phosphatidylinositol kinase activity // inferred from electronic annotation /// 0004430 // 1-phosphatidylinositol 4-kinase activity // inferred from direct assay /// 0004430 // 1-phosphatidylinositol 4-kinase activity // traceable author statement /// 0004430 // 1-phosphatidylinositol 4-kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1374690_at AI599770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599770 /DB_XREF=gi:4608818 /DB_XREF=EST251473 /CLONE=RBRDZ84 /FEA=EST /CNT=8 /TID=Rn.40526.1 /TIER=Stack /STK=6 /UG=Rn.40526 /UG_TITLE=ESTs AI599770 1374691_at BF283670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283670 /DB_XREF=gi:11214740 /DB_XREF=EST448261 /CLONE=RGIEF28 /FEA=EST /CNT=8 /TID=Rn.6659.1 /TIER=Stack /STK=6 /UG=Rn.6659 /UG_TITLE=ESTs, Weakly similar to SUDY RAT DOPATYROSINE SULFOTRANSFERASE (R.norvegicus) BF283670 sulfotransferase family 5A, member 1 Sult5a1 292077 NM_001106194 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1374692_at BE107598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107598 /DB_XREF=gi:8499703 /DB_XREF=UI-R-CA0-awv-e-10-0-UI.s1 /CLONE=UI-R-CA0-awv-e-10-0-UI /FEA=EST /CNT=8 /TID=Rn.16406.1 /TIER=Stack /STK=6 /UG=Rn.16406 /UG_TITLE=ESTs, Highly similar to SNXE_HUMAN SORTING NEXIN 14 (H.sapiens) BE107598 sorting nexin 14 Snx14 315871 NM_001108174 0007154 // cell communication // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1374693_at BM388613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388613 /DB_XREF=gi:18188671 /DB_XREF=UI-R-DZ0-ckm-f-15-0-UI.s1 /CLONE=UI-R-DZ0-ckm-f-15-0-UI /FEA=EST /CNT=8 /TID=Rn.23423.1 /TIER=Stack /STK=6 /UG=Rn.23423 /UG_TITLE=ESTs BM388613 poly (ADP-ribose) polymerase family, member 16 Parp16 315760 NM_001014093 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1374694_at BF284602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284602 /DB_XREF=gi:11215672 /DB_XREF=EST449193 /CLONE=RGIES73 /FEA=EST /CNT=8 /TID=Rn.15372.1 /TIER=Stack /STK=6 /UG=Rn.15372 /UG_TITLE=ESTs BF284602 ankyrin repeat domain 28 Ankrd28 306264 XM_001057687 /// XM_224620 0005515 // protein binding // not recorded 1374695_at BF564593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564593 /DB_XREF=gi:11674323 /DB_XREF=UI-R-BS0-ami-c-11-0-UI.r1 /CLONE=UI-R-BS0-ami-c-11-0-UI /FEA=EST /CNT=8 /TID=Rn.29900.1 /TIER=Stack /STK=6 /UG=Rn.29900 /UG_TITLE=ESTs BF564593 chromobox homolog 1 (HP1 beta homolog Drosophila ) Cbx1 360609 XM_001081346 /// XM_340885 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0000775 // chromosome, centromeric region // not recorded /// 0000785 // chromatin // inferred from electronic annotation /// 0000785 // chromatin // not recorded /// 0001939 // female pronucleus // not recorded /// 0001940 // male pronucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005721 // centromeric heterochromatin // not recorded /// 0005819 // spindle // not recorded /// 0010369 // chromocenter // not recorded 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0019899 // enzyme binding // not recorded 1374696_at AI170182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170182 /DB_XREF=gi:3710222 /DB_XREF=EST216106 /CLONE=RLUCD89 /FEA=EST /CNT=8 /TID=Rn.22473.1 /TIER=Stack /STK=6 /UG=Rn.22473 /UG_TITLE=ESTs AI170182 1374697_at AI178056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178056 /DB_XREF=gi:3728694 /DB_XREF=EST221715 /CLONE=RPLCK63 /FEA=EST /CNT=8 /TID=Rn.20730.1 /TIER=Stack /STK=6 /UG=Rn.20730 /UG_TITLE=ESTs AI178056 pleckstrin homology domain containing, family G (with RhoGef domain) member 5 Plekhg5 310999 NM_201272 0006915 // apoptosis // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043542 // endothelial cell migration // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004871 // signal transducer activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // not recorded /// 0005515 // protein binding // not recorded 1374698_at AI709531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709531 /DB_XREF=gi:4999307 /DB_XREF=UI-R-C3-tn-d-05-0-UI.s1 /CLONE=UI-R-C3-tn-d-05-0-UI /FEA=EST /CNT=8 /TID=Rn.13635.1 /TIER=Stack /STK=6 /UG=Rn.13635 /UG_TITLE=ESTs, Weakly similar to COXJ RAT CYTOCHROME C OXIDASE POLYPEPTIDE VIIA-LIVERHEART, MITOCHONDRIAL PRECURSOR (R.norvegicus) AI709531 similar to Cytochrome c oxidase polypeptide VIIa-heart, mitochondrial precursor (Cytochrome c oxidase subunit VIIa-H) (COX VIIa-M) LOC687508 687508 XM_001075627 0005746 // mitochondrial respiratory chain // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation 1374699_at BI286340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286340 /DB_XREF=gi:14940889 /DB_XREF=UI-R-DE0-caj-g-08-0-UI.s1 /CLONE=UI-R-DE0-caj-g-08-0-UI /FEA=EST /CNT=12 /TID=Rn.21319.1 /TIER=Stack /STK=6 /UG=Rn.21319 /UG_TITLE=ESTs BI286340 family with sequence similarity 84, member A Fam84a 313969 NM_001127299 1374700_at BF388903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388903 /DB_XREF=gi:11373728 /DB_XREF=UI-R-BS2-bdg-c-03-0-UI.s1 /CLONE=UI-R-BS2-bdg-c-03-0-UI /FEA=EST /CNT=12 /TID=Rn.9005.1 /TIER=Stack /STK=6 /UG=Rn.9005 /UG_TITLE=ESTs BF388903 1374701_at BG378096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378096 /DB_XREF=gi:13302568 /DB_XREF=UI-R-CT0-bvn-h-06-0-UI.s1 /CLONE=UI-R-CT0-bvn-h-06-0-UI /FEA=EST /CNT=12 /TID=Rn.7234.1 /TIER=Stack /STK=6 /UG=Rn.7234 /UG_TITLE=ESTs BG378096 ring finger protein 185 Rnf185 360967 NM_001024271 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374702_at BI291393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291393 /DB_XREF=gi:14950895 /DB_XREF=UI-R-CV2-cgp-f-01-0-UI.s1 /CLONE=UI-R-CV2-cgp-f-01-0-UI /FEA=EST /CNT=11 /TID=Rn.12186.1 /TIER=Stack /STK=6 /UG=Rn.12186 /UG_TITLE=ESTs BI291393 1374703_at BI304209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI304209 /DB_XREF=gi:14980489 /DB_XREF=UI-R-DR0-cjc-n-22-0-UI.s1 /CLONE=UI-R-DR0-cjc-n-22-0-UI /FEA=EST /CNT=10 /TID=Rn.23770.1 /TIER=Stack /STK=6 /UG=Rn.23770 /UG_TITLE=ESTs BI304209 1374704_at BM384752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384752 /DB_XREF=gi:18184805 /DB_XREF=UI-R-CN1-cjl-n-07-0-UI.s2 /CLONE=UI-R-CN1-cjl-n-07-0-UI /FEA=EST /CNT=10 /TID=Rn.14013.1 /TIER=Stack /STK=6 /UG=Rn.14013 /UG_TITLE=ESTs BM384752 KDEL (Lys-Asp-Glu-Leu) containing 2 Kdelc2 315664 NM_001025123 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 1374705_at AA891834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891834 /DB_XREF=gi:4132092 /DB_XREF=EST195637 /CLONE=RKIAH39 /FEA=EST /CNT=10 /TID=Rn.17094.1 /TIER=Stack /STK=6 /UG=Rn.17094 /UG_TITLE=ESTs AA891834 collagen, type IV, alpha 5 Col4a5 363457 XM_001055156 /// XM_343778 0005581 // collagen // inferred from electronic annotation /// 0005587 // collagen type IV // not recorded /// 0005604 // basement membrane // not recorded 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374706_at BF407916 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407916 /DB_XREF=gi:11395891 /DB_XREF=UI-R-C3-sx-e-10-0-UI.s2 /CLONE=UI-R-C3-sx-e-10-0-UI /FEA=EST /CNT=10 /TID=Rn.35518.1 /TIER=Stack /STK=6 /UG=Rn.35518 /UG_TITLE=ESTs BF407916 Growth differentiation factor 11 Gdf11 29454 XM_001071574 /// XM_343148 0001656 // metanephros development // inferred from electronic annotation /// 0001656 // metanephros development // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0021512 // spinal cord anterior/posterior patterning // inferred from electronic annotation /// 0021512 // spinal cord anterior/posterior patterning // not recorded /// 0031016 // pancreas development // inferred from electronic annotation /// 0031016 // pancreas development // not recorded /// 0040007 // growth // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from mutant phenotype /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation 1374707_at BM384854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384854 /DB_XREF=gi:18184907 /DB_XREF=UI-R-DY0-ckl-b-10-0-UI.s1 /CLONE=UI-R-DY0-ckl-b-10-0-UI /FEA=EST /CNT=10 /TID=Rn.31320.1 /TIER=Stack /STK=6 /UG=Rn.31320 /UG_TITLE=ESTs BM384854 similar to 2610301G19Rik protein RGD1309922 306007 NM_001170472 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0004857 // enzyme inhibitor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded 1374708_at BF408594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408594 /DB_XREF=gi:11396569 /DB_XREF=UI-R-BJ2-brf-f-01-0-UI.s1 /CLONE=UI-R-BJ2-brf-f-01-0-UI /FEA=EST /CNT=9 /TID=Rn.18942.1 /TIER=Stack /STK=6 /UG=Rn.18942 /UG_TITLE=ESTs BF408594 similar to Rho guanine nucleotide exchange factor (GEF) 10 RGD1565043 306618 XM_001074859 /// XM_002725212 /// XM_002725213 /// XM_002728436 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1374709_at AI406795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406795 /DB_XREF=gi:4250299 /DB_XREF=EST235082 /CLONE=RBRDI44 /FEA=EST /CNT=9 /TID=Rn.19878.1 /TIER=Stack /STK=6 /UG=Rn.19878 /UG_TITLE=ESTs AI406795 1374710_at BI289549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289549 /DB_XREF=gi:14947234 /DB_XREF=UI-R-DK0-cff-d-03-0-UI.s1 /CLONE=UI-R-DK0-cff-d-03-0-UI /FEA=EST /CNT=9 /TID=Rn.41040.1 /TIER=Stack /STK=6 /UG=Rn.41040 /UG_TITLE=ESTs BI289549 1374711_at BF283512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283512 /DB_XREF=gi:11214582 /DB_XREF=EST448103 /CLONE=RGIED33 /FEA=EST /CNT=9 /TID=Rn.14820.1 /TIER=Stack /STK=6 /UG=Rn.14820 /UG_TITLE=ESTs BF283512 cleavage and polyadenylation specificity factor 3 Cpsf3 298916 NM_001030030 0006398 // histone mRNA 3'-end processing // not recorded /// 0008380 // RNA splicing // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0004521 // endoribonuclease activity // inferred from electronic annotation /// 0004521 // endoribonuclease activity // not recorded /// 0005515 // protein binding // not recorded /// 0008409 // 5'-3' exonuclease activity // inferred from electronic annotation /// 0008409 // 5'-3' exonuclease activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1374712_at AA946509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946509 /DB_XREF=gi:4132829 /DB_XREF=EST202008 /CLONE=ROVAR96 /FEA=EST /CNT=9 /TID=Rn.8203.1 /TIER=Stack /STK=6 /UG=Rn.8203 /UG_TITLE=ESTs, Highly similar to JC6524 26S proteasome regulatory complex chain p44.5 (H.sapiens) AA946509 proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 Psmd11 303353 NM_001107027 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1374713_at AI228970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228970 /DB_XREF=gi:3812857 /DB_XREF=EST225665 /CLONE=RBRDC35 /FEA=EST /CNT=9 /TID=Rn.24383.1 /TIER=Stack /STK=6 /UG=Rn.24383 /UG_TITLE=ESTs AI228970 1374714_at BI284781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284781 /DB_XREF=gi:14937767 /DB_XREF=UI-R-CX0s-ccs-b-05-0-UI.s1 /CLONE=UI-R-CX0s-ccs-b-05-0-UI /FEA=EST /CNT=9 /TID=Rn.9345.1 /TIER=Stack /STK=6 /UG=Rn.9345 /UG_TITLE=ESTs BI284781 1374715_at BE097245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097245 /DB_XREF=gi:8488176 /DB_XREF=UI-R-BO1-apv-a-08-0-UI.s1 /CLONE=UI-R-BO1-apv-a-08-0-UI /FEA=EST /CNT=9 /TID=Rn.17260.1 /TIER=Stack /STK=6 /UG=Rn.17260 /UG_TITLE=ESTs, Weakly similar to T31906 hypothetical protein T05H4.14 - Caenorhabditis elegans (C.elegans) BE097245 WD repeat domain 70 Wdr70 294783 NM_001013909 1374716_at AI411620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411620 /DB_XREF=gi:4255124 /DB_XREF=EST239914 /CLONE=ROVES41 /FEA=EST /CNT=9 /TID=Rn.16050.1 /TIER=Stack /STK=6 /UG=Rn.16050 /UG_TITLE=ESTs AI411620 ribosomal RNA processing 15 homolog (S. cerevisiae) Rrp15 360895 NM_001009702 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374717_at BI295624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295624 /DB_XREF=gi:14959259 /DB_XREF=UI-R-DK0-cek.1-e-12-0-UI.s2 /CLONE=UI-R-DK0-cek.1-e-12-0-UI /FEA=EST /CNT=8 /TID=Rn.7271.1 /TIER=Stack /STK=6 /UG=Rn.7271 /UG_TITLE=ESTs BI295624 1374718_at AA945915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945915 /DB_XREF=gi:3105831 /DB_XREF=EST201414 /CLONE=RLUAW88 /FEA=EST /CNT=8 /TID=Rn.1971.1 /TIER=Stack /STK=6 /UG=Rn.1971 /UG_TITLE=ESTs AA945915 deltex 3-like (Drosophila) Dtx3l 498089 NM_001109053 0006974 // response to DNA damage stimulus // not recorded /// 0010390 // histone monoubiquitination // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042393 // histone binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1374719_at BF285339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285339 /DB_XREF=gi:11216409 /DB_XREF=EST449930 /CLONE=RGIFD75 /FEA=EST /CNT=8 /TID=Rn.15521.1 /TIER=Stack /STK=6 /UG=Rn.15521 /UG_TITLE=ESTs BF285339 1374720_at BE109644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109644 /DB_XREF=gi:8501749 /DB_XREF=UI-R-BJ1-avq-e-06-0-UI.s1 /CLONE=UI-R-BJ1-avq-e-06-0-UI /FEA=EST /CNT=8 /TID=Rn.7100.1 /TIER=Stack /STK=6 /UG=Rn.7100 /UG_TITLE=ESTs BE109644 endo/exonuclease (5'-3'), endonuclease G-like Exog 301062 NM_001106866 0005739 // mitochondrion // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374721_at AI178647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178647 /DB_XREF=gi:3729285 /DB_XREF=EST222328 /CLONE=RPLCT82 /FEA=EST /CNT=8 /TID=Rn.29246.1 /TIER=Stack /STK=6 /UG=Rn.29246 /UG_TITLE=ESTs AI178647 1374722_at BI296396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296396 /DB_XREF=gi:14960778 /DB_XREF=UI-R-DK0-cez-h-05-0-UI.s1 /CLONE=UI-R-DK0-cez-h-05-0-UI /FEA=EST /CNT=8 /TID=Rn.53880.1 /TIER=Stack /STK=6 /UG=Rn.53880 /UG_TITLE=ESTs BI296396 C1q and tumor necrosis factor related protein 1 C1qtnf1 303701 NM_001007675 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 1374723_at BG380632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380632 /DB_XREF=gi:13305104 /DB_XREF=UI-R-CT0-btz-f-01-0-UI.s1 /CLONE=UI-R-CT0-btz-f-01-0-UI /FEA=EST /CNT=8 /TID=Rn.7992.1 /TIER=Stack /STK=6 /UG=Rn.7992 /UG_TITLE=ESTs BG380632 1374724_at BG378232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378232 /DB_XREF=gi:13302704 /DB_XREF=UI-R-CV1-bvp-f-01-0-UI.s1 /CLONE=UI-R-CV1-bvp-f-01-0-UI /FEA=EST /CNT=8 /TID=Rn.11731.1 /TIER=Stack /STK=6 /UG=Rn.11731 /UG_TITLE=ESTs BG378232 1374725_at AW252811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252811 /DB_XREF=gi:6596402 /DB_XREF=UI-R-BJ0-ael-a-04-0-UI.s1 /CLONE=UI-R-BJ0-ael-a-04-0-UI /FEA=EST /CNT=8 /TID=Rn.20774.1 /TIER=Stack /STK=6 /UG=Rn.20774 /UG_TITLE=ESTs, Highly similar to MV10 MOUSE PROTEIN MOV-10 (M.musculus) AW252811 Moloney leukemia virus 10 Mov10 310756 NM_001107711 0035279 // mRNA cleavage involved in gene silencing by miRNA // not recorded 0000932 // cytoplasmic mRNA processing body // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1374726_at AI411941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411941 /DB_XREF=gi:4255445 /DB_XREF=EST240235 /CLONE=RKIER25 /FEA=EST /CNT=8 /TID=Rn.20633.1 /TIER=Stack /STK=6 /UG=Rn.20633 /UG_TITLE=ESTs AI411941 fibronectin type III domain containing 1 Fndc1 308099 NM_001038615 0005576 // extracellular region // inferred from electronic annotation 1374727_at AF244895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF244895 /DB_XREF=gi:7581489 /DB_XREF=AF244895 /FEA=EST /CNT=8 /TID=Rn.21289.1 /TIER=Stack /STK=6 /UG=Rn.21289 /UG_TITLE=ESTs AF244895 DnaJ (Hsp40) homolog, subfamily B, member 12 Dnajb12 294513 NM_001013907 0006457 // protein folding // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1374728_at BG671786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671786 /DB_XREF=gi:13893885 /DB_XREF=DRNBYA01 /CLONE=DRNBYA01 /FEA=EST /CNT=8 /TID=Rn.9183.1 /TIER=Stack /STK=6 /UG=Rn.9183 /UG_TITLE=ESTs BG671786 1374729_at BM385616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385616 /DB_XREF=gi:18185669 /DB_XREF=UI-R-DM1-ckd-l-07-0-UI.s1 /CLONE=UI-R-DM1-ckd-l-07-0-UI /FEA=EST /CNT=8 /TID=Rn.15803.1 /TIER=Stack /STK=6 /UG=Rn.15803 /UG_TITLE=ESTs BM385616 1374730_at AI102519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102519 /DB_XREF=gi:3707279 /DB_XREF=EST211808 /CLONE=REMBO71 /FEA=EST /CNT=8 /TID=Rn.11534.1 /TIER=Stack /STK=6 /UG=Rn.11534 /UG_TITLE=ESTs, Highly similar to TYRO protein tyrosine kinase binding protein; killer cell activating receptor associated protein (Mus musculus) (M.musculus) AI102519 Tyro protein tyrosine kinase binding protein Tyrobp 361537 NM_212525 0023034 // intracellular signaling pathway // traceable author statement 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0005057 // receptor signaling protein activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1374731_at BI275929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275929 /DB_XREF=gi:14920345 /DB_XREF=UI-R-CX0-bxi-b-07-0-UI.s1 /CLONE=UI-R-CX0-bxi-b-07-0-UI /FEA=EST /CNT=8 /TID=Rn.22621.1 /TIER=Stack /STK=6 /UG=Rn.22621 /UG_TITLE=ESTs BI275929 1374732_at BI275803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275803 /DB_XREF=gi:14920093 /DB_XREF=UI-R-CX0-bxg-h-01-0-UI.s1 /CLONE=UI-R-CX0-bxg-h-01-0-UI /FEA=EST /CNT=8 /TID=Rn.8406.1 /TIER=Stack /STK=6 /UG=Rn.8406 /UG_TITLE=ESTs BI275803 hexamthylene bis-acetamide inducible 2 Hexim2 303580 NM_001107054 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // not recorded 0004861 // cyclin-dependent protein kinase inhibitor activity // inferred from electronic annotation /// 0004861 // cyclin-dependent protein kinase inhibitor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0017069 // snRNA binding // inferred from electronic annotation /// 0017069 // snRNA binding // not recorded 1374733_at BM387193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387193 /DB_XREF=gi:18187246 /DB_XREF=UI-R-CN1-cji-p-01-0-UI.s1 /CLONE=UI-R-CN1-cji-p-01-0-UI /FEA=EST /CNT=8 /TID=Rn.44851.1 /TIER=Stack /STK=6 /UG=Rn.44851 /UG_TITLE=ESTs, Highly similar to symplekin (H.sapiens) BM387193 symplekin Sympk 292683 NM_001100830 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374734_at BE115842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115842 /DB_XREF=gi:8507987 /DB_XREF=UI-R-BS1-axx-a-02-0-UI.s1 /CLONE=UI-R-BS1-axx-a-02-0-UI /FEA=EST /CNT=8 /TID=Rn.37182.1 /TIER=Stack /STK=6 /UG=Rn.37182 /UG_TITLE=ESTs, Weakly similar to 60S RIBOSOMAL PROTEIN L37A (R.norvegicus) BE115842 hypothetical protein LOC680254 LOC680254 680254 NR_027983 1374735_at BE111827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111827 /DB_XREF=gi:8503932 /DB_XREF=UI-R-BJ1-avz-c-02-0-UI.s1 /CLONE=UI-R-BJ1-avz-c-02-0-UI /FEA=EST /CNT=8 /TID=Rn.23472.1 /TIER=Stack /STK=6 /UG=Rn.23472 /UG_TITLE=ESTs, Moderately similar to RHG4_HUMAN RHO-GTPASE-ACTIVATING PROTEIN 4 (H.sapiens) BE111827 Rho GTPase activating protein 4 Arhgap4 246249 NM_144740 0006915 // apoptosis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007399 // nervous system development // inferred from expression pattern /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0010764 // negative regulation of fibroblast migration // inferred from mutant phenotype /// 0030517 // negative regulation of axon extension // inferred from mutant phenotype /// 0035023 // regulation of Rho protein signal transduction // non-traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005874 // microtubule // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005100 // Rho GTPase activator activity // inferred from direct assay 1374736_at AI172004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172004 /DB_XREF=gi:3712044 /DB_XREF=EST217999 /CLONE=RMUBT75 /FEA=EST /CNT=8 /TID=Rn.8888.1 /TIER=Stack /STK=6 /UG=Rn.8888 /UG_TITLE=ESTs AI172004 1374737_at AW528218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528218 /DB_XREF=gi:7170632 /DB_XREF=UI-R-BT1-ajw-a-10-0-UI.s1 /CLONE=UI-R-BT1-ajw-a-10-0-UI /FEA=EST /CNT=8 /TID=Rn.16227.1 /TIER=Stack /STK=6 /UG=Rn.16227 /UG_TITLE=ESTs AW528218 tRNA splicing endonuclease 54 homolog (S. cerevisiae) Tsen54 690308 NM_001109576 0006388 // tRNA splicing, via endonucleolytic cleavage and ligation // not recorded 1374738_at BF416387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416387 /DB_XREF=gi:11404376 /DB_XREF=UI-R-CA0-bks-a-06-0-UI.s1 /CLONE=UI-R-CA0-bks-a-06-0-UI /FEA=EST /CNT=8 /TID=Rn.26961.1 /TIER=Stack /STK=6 /UG=Rn.26961 /UG_TITLE=ESTs BF416387 serologically defined colon cancer antigen 10 Sdccag10 361887 NM_001013199 0006457 // protein folding // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1374739_at AI236771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236771 /DB_XREF=gi:3830277 /DB_XREF=EST233333 /CLONE=ROVDK34 /FEA=EST /CNT=8 /TID=Rn.16249.1 /TIER=Stack /STK=6 /UG=Rn.16249 /UG_TITLE=ESTs AI236771 cell division cycle associated 4 Cdca4 500727 NM_001037214 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // not recorded 1374740_at BF408740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408740 /DB_XREF=gi:11396715 /DB_XREF=UI-R-BT1-bnf-f-05-0-UI.s1 /CLONE=UI-R-BT1-bnf-f-05-0-UI /FEA=EST /CNT=8 /TID=Rn.41529.1 /TIER=Stack /STK=6 /UG=Rn.41529 /UG_TITLE=ESTs BF408740 similar to K11B4.2 LOC688966 688966 NM_001145726 1374741_at AI171726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171726 /DB_XREF=gi:3711766 /DB_XREF=EST217708 /CLONE=RMUBO87 /FEA=EST /CNT=8 /TID=Rn.17140.1 /TIER=Stack /STK=6 /UG=Rn.17140 /UG_TITLE=ESTs, Weakly similar to I67424 hERR-2 homolog - rat (R.norvegicus) AI171726 estrogen related receptor, alpha Esrra 293701 NM_001008511 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0030278 // regulation of ossification // inferred from mutant phenotype /// 0042127 // regulation of cell proliferation // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045667 // regulation of osteoblast differentiation // inferred from mutant phenotype /// 0045670 // regulation of osteoclast differentiation // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0051216 // cartilage development // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005496 // steroid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374742_at AA943983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943983 /DB_XREF=gi:3103899 /DB_XREF=EST199482 /CLONE=REMAA10 /FEA=EST /CNT=8 /TID=Rn.24941.1 /TIER=Stack /STK=6 /UG=Rn.24941 /UG_TITLE=ESTs AA943983 1374743_at BE115056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115056 /DB_XREF=gi:8507161 /DB_XREF=UI-R-BJ1-awu-g-03-0-UI.s1 /CLONE=UI-R-BJ1-awu-g-03-0-UI /FEA=EST /CNT=8 /TID=Rn.35245.1 /TIER=Stack /STK=6 /UG=Rn.35245 /UG_TITLE=ESTs BE115056 InaD-like 2 (Drosophila) Inadl2 140581 XM_002729506 0045177 // apical part of cell // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1374744_at BF392285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392285 /DB_XREF=gi:11377142 /DB_XREF=UI-R-CA0-bfn-c-07-0-UI.s1 /CLONE=UI-R-CA0-bfn-c-07-0-UI /FEA=EST /CNT=7 /TID=Rn.63611.1 /TIER=Stack /STK=6 /UG=Rn.63611 /UG_TITLE=ESTs BF392285 1374745_at BM391278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391278 /DB_XREF=gi:18191331 /DB_XREF=UI-R-DY0-ckq-b-19-0-UI.s1 /CLONE=UI-R-DY0-ckq-b-19-0-UI /FEA=EST /CNT=7 /TID=Rn.20141.2 /TIER=Stack /STK=6 /UG=Rn.20141 /UG_TITLE=Rattus norvegicus peroxisomal thioesterase 1 mRNA, complete cds BM391278 sorting nexin 21-like /// sorting nexin 21-like LOC100362940 /// LOC100364126 100362940 /// 100364126 XM_002726281 /// XM_002729253 0007154 // cell communication // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1374746_at AA891922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891922 /DB_XREF=gi:3018801 /DB_XREF=EST195725 /CLONE=RKIAI64 /FEA=EST /CNT=7 /TID=Rn.3690.1 /TIER=Stack /STK=6 /UG=Rn.3690 /UG_TITLE=ESTs AA891922 1374747_at BM384279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384279 /DB_XREF=gi:18184332 /DB_XREF=UI-R-DZ0-cks-o-11-0-UI.s1 /CLONE=UI-R-DZ0-cks-o-11-0-UI /FEA=EST /CNT=7 /TID=Rn.13668.1 /TIER=Stack /STK=6 /UG=Rn.13668 /UG_TITLE=ESTs BM384279 PFTAIRE protein kinase 1 Pftk1 362316 NM_001108617 0000086 // G2/M transition of mitotic cell cycle // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0060828 // regulation of canonical Wnt receptor signaling pathway // not recorded 0000308 // cytoplasmic cyclin-dependent protein kinase holoenzyme complex // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0030332 // cyclin binding // not recorded 1374748_at AI010087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010087 /DB_XREF=gi:4133156 /DB_XREF=EST204538 /CLONE=RLUBT56 /FEA=EST /CNT=7 /TID=Rn.3684.1 /TIER=Stack /STK=6 /UG=Rn.3684 /UG_TITLE=ESTs AI010087 serine hydroxymethyltransferase 1 (soluble) Shmt1 287379 NM_001047842 0006544 // glycine metabolic process // inferred from direct assay /// 0006544 // glycine metabolic process // traceable author statement /// 0006544 // glycine metabolic process // inferred from electronic annotation /// 0006545 // glycine biosynthetic process // inferred from direct assay /// 0006563 // L-serine metabolic process // traceable author statement /// 0006563 // L-serine metabolic process // inferred from electronic annotation /// 0006565 // L-serine catabolic process // inferred from electronic annotation /// 0006565 // L-serine catabolic process // not recorded /// 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0009113 // purine base biosynthetic process // inferred from electronic annotation /// 0009113 // purine base biosynthetic process // not recorded /// 0019264 // glycine biosynthetic process from serine // inferred from direct assay /// 0046655 // folic acid metabolic process // inferred from electronic annotation /// 0046655 // folic acid metabolic process // not recorded /// 0051262 // protein tetramerization // not recorded /// 0051262 // protein tetramerization // inferred from electronic annotation /// 0051289 // protein homotetramerization // inferred from direct assay 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // traceable author statement /// 0005829 // cytosol // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004372 // glycine hydroxymethyltransferase activity // inferred from direct assay /// 0004372 // glycine hydroxymethyltransferase activity // not recorded /// 0004372 // glycine hydroxymethyltransferase activity // traceable author statement /// 0004372 // glycine hydroxymethyltransferase activity // inferred from electronic annotation /// 0008732 // L-allo-threonine aldolase activity // inferred from direct assay /// 0016597 // amino acid binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from direct assay /// 0030170 // pyridoxal phosphate binding // not recorded /// 0030170 // pyridoxal phosphate binding // traceable author statement /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1374749_at BM392169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392169 /DB_XREF=gi:18192222 /DB_XREF=UI-R-DO1-ckp-i-10-0-UI.s1 /CLONE=UI-R-DO1-ckp-i-10-0-UI /FEA=EST /CNT=7 /TID=Rn.45715.1 /TIER=Stack /STK=6 /UG=Rn.45715 /UG_TITLE=ESTs BM392169 1374750_at AI172313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172313 /DB_XREF=gi:3712353 /DB_XREF=EST218314 /CLONE=RMUBX68 /FEA=EST /CNT=7 /TID=Rn.6257.1 /TIER=Stack /STK=6 /UG=Rn.6257 /UG_TITLE=ESTs AI172313 1374751_at BM383668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383668 /DB_XREF=gi:18183721 /DB_XREF=UI-R-DM1-cka-p-08-0-UI.s1 /CLONE=UI-R-DM1-cka-p-08-0-UI /FEA=EST /CNT=7 /TID=Rn.6816.1 /TIER=Stack /STK=6 /UG=Rn.6816 /UG_TITLE=ESTs BM383668 1374752_at AI408734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408734 /DB_XREF=gi:4252238 /DB_XREF=EST237025 /CLONE=ROVEG34 /FEA=EST /CNT=7 /TID=Rn.18295.1 /TIER=Stack /STK=6 /UG=Rn.18295 /UG_TITLE=ESTs AI408734 MyoD family inhibitor domain containing Mdfic 362325 NM_001105668 0007257 // activation of JUN kinase activity // not recorded /// 0030111 // regulation of Wnt receptor signaling pathway // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0050434 // positive regulation of viral transcription // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0030332 // cyclin binding // not recorded /// 0030957 // Tat protein binding // not recorded 1374753_at AI105113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105113 /DB_XREF=gi:3705127 /DB_XREF=EST214402 /CLONE=RHECN78 /FEA=EST /CNT=7 /TID=Rn.6410.1 /TIER=Stack /STK=6 /UG=Rn.6410 /UG_TITLE=ESTs AI105113 1374754_at BF400833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400833 /DB_XREF=gi:11388773 /DB_XREF=UI-R-CA0-bhf-g-04-0-UI.s1 /CLONE=UI-R-CA0-bhf-g-04-0-UI /FEA=EST /CNT=7 /TID=Rn.12700.1 /TIER=Stack /STK=6 /UG=Rn.12700 /UG_TITLE=ESTs BF400833 1374755_at BG667112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667112 /DB_XREF=gi:13889034 /DB_XREF=DRACPD02 /CLONE=DRACPD02 /FEA=EST /CNT=7 /TID=Rn.32507.1 /TIER=Stack /STK=6 /UG=Rn.32507 /UG_TITLE=ESTs BG667112 1374756_at BI295129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295129 /DB_XREF=gi:14958266 /DB_XREF=UI-R-DK0-ceg-b-04-0-UI.s1 /CLONE=UI-R-DK0-ceg-b-04-0-UI /FEA=EST /CNT=7 /TID=Rn.23996.1 /TIER=Stack /STK=6 /UG=Rn.23996 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) BI295129 similar to 1500031N24Rik protein RGD1311188 315088 NM_001135897 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374757_at BI285954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285954 /DB_XREF=gi:14940120 /DB_XREF=UI-R-CX0s-ccp-g-04-0-UI.s1 /CLONE=UI-R-CX0s-ccp-g-04-0-UI /FEA=EST /CNT=7 /TID=Rn.22761.1 /TIER=Stack /STK=6 /UG=Rn.22761 /UG_TITLE=ESTs BI285954 pregnancy-specific glycoprotein 29 Psg29 292666 NM_001025641 0007565 // female pregnancy // inferred from electronic annotation 1374758_at BM387112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387112 /DB_XREF=gi:18187165 /DB_XREF=UI-R-CN1-cji-o-12-0-UI.s1 /CLONE=UI-R-CN1-cji-o-12-0-UI /FEA=EST /CNT=7 /TID=Rn.3315.1 /TIER=Stack /STK=6 /UG=Rn.3315 /UG_TITLE=ESTs BM387112 1374759_at AI600037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600037 /DB_XREF=gi:4609085 /DB_XREF=EST251740 /CLONE=REMDO71 /FEA=EST /CNT=7 /TID=Rn.40168.1 /TIER=Stack /STK=6 /UG=Rn.40168 /UG_TITLE=ESTs AI600037 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1 Galntl1 362760 NM_001100863 /// XM_001053416 /// XM_343087 1374760_at BG374448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374448 /DB_XREF=gi:13298920 /DB_XREF=UI-R-CV1-bsp-e-07-0-UI.s1 /CLONE=UI-R-CV1-bsp-e-07-0-UI /FEA=EST /CNT=7 /TID=Rn.30593.1 /TIER=Stack /STK=6 /UG=Rn.30593 /UG_TITLE=ESTs BG374448 1374761_at BM387073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387073 /DB_XREF=gi:18187126 /DB_XREF=UI-R-CN1-cji-g-22-0-UI.s1 /CLONE=UI-R-CN1-cji-g-22-0-UI /FEA=EST /CNT=7 /TID=Rn.8949.1 /TIER=Stack /STK=6 /UG=Rn.8949 /UG_TITLE=ESTs, Weakly similar to ADG MOUSE GAMMA-ADAPTIN (M.musculus) BM387073 golgi associated, gamma adaptin ear containing, ARF binding protein 1 Gga1 300066 NM_001011994 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0044431 // Golgi apparatus part // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374762_at BE108896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108896 /DB_XREF=gi:8501001 /DB_XREF=UI-R-BS1-ayz-f-06-0-UI.s1 /CLONE=UI-R-BS1-ayz-f-06-0-UI /FEA=EST /CNT=7 /TID=Rn.9069.1 /TIER=Stack /STK=6 /UG=Rn.9069 /UG_TITLE=ESTs BE108896 1374763_at BI274117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274117 /DB_XREF=gi:14884737 /DB_XREF=UI-R-CW0-bwf-b-08-0-UI.s1 /CLONE=UI-R-CW0-bwf-b-08-0-UI /FEA=EST /CNT=7 /TID=Rn.16257.1 /TIER=Stack /STK=6 /UG=Rn.16257 /UG_TITLE=ESTs BI274117 cerebral endothelial cell adhesion molecule Cercam 296616 NM_001011962 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1374764_at BG378053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378053 /DB_XREF=gi:13302525 /DB_XREF=UI-R-CT0-bvn-c-09-0-UI.s1 /CLONE=UI-R-CT0-bvn-c-09-0-UI /FEA=EST /CNT=7 /TID=Rn.12567.1 /TIER=Stack /STK=6 /UG=Rn.12567 /UG_TITLE=ESTs, Moderately similar to JE0188 RES4-25 protein (H.sapiens) BG378053 NOP14 nucleolar protein homolog (yeast) Nop14 289724 NM_001106013 1374765_at BI288055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288055 /DB_XREF=gi:14944262 /DB_XREF=UI-R-DC0-cay-d-07-0-UI.s2 /CLONE=UI-R-DC0-cay-d-07-0-UI /FEA=EST /CNT=7 /TID=Rn.46188.1 /TIER=Stack /STK=6 /UG=Rn.46188 /UG_TITLE=ESTs BI288055 1374766_at BE103616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103616 /DB_XREF=gi:8495716 /DB_XREF=UI-R-BX0-arg-d-04-0-UI.s1 /CLONE=UI-R-BX0-arg-d-04-0-UI /FEA=EST /CNT=7 /TID=Rn.16092.1 /TIER=Stack /STK=6 /UG=Rn.16092 /UG_TITLE=ESTs BE103616 1374767_at AI105450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105450 /DB_XREF=gi:3705207 /DB_XREF=EST214739 /CLONE=RKIBK53 /FEA=EST /CNT=7 /TID=Rn.263.1 /TIER=Stack /STK=6 /UG=Rn.263 /UG_TITLE=ESTs AI105450 aminopeptidase O Npepo 290963 NM_001012346 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // inferred from sequence or structural similarity /// 0006508 // proteolysis // inferred from electronic annotation /// 0019370 // leukotriene biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004177 // aminopeptidase activity // not recorded /// 0004177 // aminopeptidase activity // inferred from sequence or structural similarity /// 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // not recorded /// 0008237 // metallopeptidase activity // inferred from sequence or structural similarity /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374768_at BI279857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279857 /DB_XREF=gi:14928074 /DB_XREF=UI-R-CU0s-cbr-g-05-0-UI.s1 /CLONE=UI-R-CU0s-cbr-g-05-0-UI /FEA=EST /CNT=7 /TID=Rn.34654.1 /TIER=Stack /STK=6 /UG=Rn.34654 /UG_TITLE=ESTs BI279857 coiled-coil domain containing 65 Ccdc65 362994 NM_001014203 1374769_at BF405313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405313 /DB_XREF=gi:11393288 /DB_XREF=UI-R-CA1-biw-k-15-0-UI.s1 /CLONE=UI-R-CA1-biw-k-15-0-UI /FEA=EST /CNT=7 /TID=Rn.51555.1 /TIER=Stack /STK=6 /UG=Rn.51555 /UG_TITLE=ESTs BF405313 1374770_at AA800062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800062 /DB_XREF=gi:2863017 /DB_XREF=EST189559 /CLONE=RHEAI95 /FEA=EST /CNT=7 /TID=Rn.4158.1 /TIER=Stack /STK=6 /UG=Rn.4158 /UG_TITLE=ESTs AA800062 N-acylsphingosine amidohydrolase (acid ceramidase) 1 Asah1 84431 NM_053407 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0010033 // response to organic substance // inferred from direct assay /// 0030324 // lung development // inferred from direct assay 0005764 // lysosome // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation /// 0017040 // ceramidase activity // inferred from electronic annotation /// 0017040 // ceramidase activity // not recorded 1374771_at BM388859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388859 /DB_XREF=gi:18188912 /DB_XREF=UI-R-DZ0-ckn-i-18-0-UI.s1 /CLONE=UI-R-DZ0-ckn-i-18-0-UI /FEA=EST /CNT=7 /TID=Rn.19145.1 /TIER=Stack /STK=6 /UG=Rn.19145 /UG_TITLE=ESTs BM388859 1374772_at BE100409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100409 /DB_XREF=gi:8492301 /DB_XREF=UI-R-BJ1-atv-b-06-0-UI.s1 /CLONE=UI-R-BJ1-atv-b-06-0-UI /FEA=EST /CNT=7 /TID=Rn.15872.1 /TIER=Stack /STK=6 /UG=Rn.15872 /UG_TITLE=ESTs, Weakly similar to T23009 hypothetical protein F59F4.2 - Caenorhabditis elegans (C.elegans) BE100409 stress-associated endoplasmic reticulum protein family member 2 Serp2 498546 NM_001109104 1374773_at BF398048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398048 /DB_XREF=gi:11383033 /DB_XREF=UI-R-BS2-beg-f-11-0-UI.s1 /CLONE=UI-R-BS2-beg-f-11-0-UI /FEA=EST /CNT=7 /TID=Rn.20410.1 /TIER=Stack /STK=6 /UG=Rn.20410 /UG_TITLE=ESTs BF398048 1374774_at BF552241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552241 /DB_XREF=gi:11661971 /DB_XREF=UI-R-C1-ln-h-09-0-UI.r1 /CLONE=UI-R-C1-ln-h-09-0-UI /FEA=EST /CNT=7 /TID=Rn.50709.1 /TIER=Stack /STK=6 /UG=Rn.50709 /UG_TITLE=ESTs BF552241 Protein tyrosine phosphatase, non-receptor type 14 Ptpn14 305064 NM_001107200 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0005856 // cytoskeleton // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1374775_at AI714002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI714002 /DB_XREF=gi:5017802 /DB_XREF=UI-R-AF1-aar-d-05-0-UI.s1 /CLONE=UI-R-AF1-aar-d-05-0-UI /FEA=EST /CNT=7 /TID=Rn.12774.1 /TIER=Stack /STK=6 /UG=Rn.12774 /UG_TITLE=ESTs, Moderately similar to T30249 cell proliferation antigen Ki-67 - mouse (M.musculus) AI714002 antigen identified by monoclonal antibody Ki-67 Mki67 291234 XM_001056221 /// XM_225460 0006259 // DNA metabolic process // inferred from expression pattern /// 0007126 // meiosis // not recorded /// 0008283 // cell proliferation // inferred from expression pattern /// 0008283 // cell proliferation // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0034605 // cellular response to heat // inferred from expression pattern 0000775 // chromosome, centromeric region // not recorded /// 0000793 // condensed chromosome // not recorded /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded 1374776_at BG380430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380430 /DB_XREF=gi:13304902 /DB_XREF=UI-R-CT0-btx-b-10-0-UI.s1 /CLONE=UI-R-CT0-btx-b-10-0-UI /FEA=EST /CNT=7 /TID=Rn.13814.1 /TIER=Stack /STK=6 /UG=Rn.13814 /UG_TITLE=ESTs BG380430 vasohibin 2 Vash2 498309 NM_001109082 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0045766 // positive regulation of angiogenesis // not recorded 0005737 // cytoplasm // not recorded 1374777_at BG380800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380800 /DB_XREF=gi:13305272 /DB_XREF=UI-R-CT0-bub-e-10-0-UI.s1 /CLONE=UI-R-CT0-bub-e-10-0-UI /FEA=EST /CNT=7 /TID=Rn.15200.1 /TIER=Stack /STK=6 /UG=Rn.15200 /UG_TITLE=ESTs BG380800 hypothetical protein LOC502894 LOC502894 502894 NM_001025064 0005622 // intracellular // not recorded 1374778_at AI409046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409046 /DB_XREF=gi:4252550 /DB_XREF=EST237338 /CLONE=RKIDP05 /FEA=EST /CNT=7 /TID=Rn.8136.1 /TIER=Stack /STK=6 /UG=Rn.8136 /UG_TITLE=ESTs AI409046 1374779_at BM388525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388525 /DB_XREF=gi:18188578 /DB_XREF=UI-R-DZ0-ckm-c-10-0-UI.s1 /CLONE=UI-R-DZ0-ckm-c-10-0-UI /FEA=EST /CNT=7 /TID=Rn.22460.1 /TIER=Stack /STK=6 /UG=Rn.22460 /UG_TITLE=ESTs BM388525 coagulation factor XIII, A1 polypeptide F13a1 60327 NM_021698 0007596 // blood coagulation // inferred from direct assay /// 0007596 // blood coagulation // not recorded /// 0007596 // blood coagulation // inferred from electronic annotation /// 0018149 // peptide cross-linking // inferred from electronic annotation /// 0018149 // peptide cross-linking // not recorded /// 0042060 // wound healing // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0003810 // protein-glutamine gamma-glutamyltransferase activity // inferred from electronic annotation /// 0003810 // protein-glutamine gamma-glutamyltransferase activity // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374780_at AI232806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232806 /DB_XREF=gi:3816686 /DB_XREF=EST229494 /CLONE=RKICG83 /FEA=EST /CNT=7 /TID=Rn.9264.2 /TIER=Stack /STK=6 /UG=Rn.9264 /LL=171110 /UG_GENE=Znf22 /UG_TITLE=zinc finger protein 22 (KOX 15) AI232806 1374781_at AW533214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533214 /DB_XREF=gi:7175628 /DB_XREF=UI-R-BU0-ana-b-07-0-UI.s1 /CLONE=UI-R-BU0-ana-b-07-0-UI /FEA=EST /CNT=7 /TID=Rn.23559.1 /TIER=Stack /STK=6 /UG=Rn.23559 /UG_TITLE=ESTs AW533214 1374782_at BF419834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419834 /DB_XREF=gi:11407823 /DB_XREF=UI-R-CA0-bpg-g-07-0-UI.s1 /CLONE=UI-R-CA0-bpg-g-07-0-UI /FEA=EST /CNT=7 /TID=Rn.51810.1 /TIER=Stack /STK=6 /UG=Rn.51810 /UG_TITLE=ESTs BF419834 1374783_at BI301183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301183 /DB_XREF=gi:14977463 /DB_XREF=UI-R-DK0-cdx-c-07-0-UI.s2 /CLONE=UI-R-DK0-cdx-c-07-0-UI /FEA=EST /CNT=7 /TID=Rn.1341.1 /TIER=Stack /STK=6 /UG=Rn.1341 /UG_TITLE=ESTs BI301183 suppressor of Ty 3 homolog (S. cerevisiae) Supt3h 685697 XM_001064890 /// XM_002727168 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation 1374784_at AI407006 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407006 /DB_XREF=gi:4250510 /DB_XREF=EST235294 /CLONE=ROVDV16 /FEA=EST /CNT=7 /TID=Rn.33792.1 /TIER=Stack /STK=6 /UG=Rn.33792 /UG_TITLE=ESTs, Weakly similar to HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE (R.norvegicus) AI407006 phosphoribosyl transferase domain containing 1 Prtfdc1 291355 NM_001106127 0006166 // purine ribonucleoside salvage // inferred from electronic annotation /// 0009116 // nucleoside metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004422 // hypoxanthine phosphoribosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1374785_at BG380471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380471 /DB_XREF=gi:13304943 /DB_XREF=UI-R-CT0-btx-f-08-0-UI.s1 /CLONE=UI-R-CT0-btx-f-08-0-UI /FEA=EST /CNT=7 /TID=Rn.38430.1 /TIER=Stack /STK=6 /UG=Rn.38430 /UG_TITLE=ESTs BG380471 C-type lectin domain family 2, member L Clec2l 296985 NM_001044233 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1374786_at BI298817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298817 /DB_XREF=gi:14975097 /DB_XREF=UI-R-CV2-chv-a-04-0-UI.s1 /CLONE=UI-R-CV2-chv-a-04-0-UI /FEA=EST /CNT=7 /TID=Rn.67003.1 /TIER=Stack /STK=6 /UG=Rn.67003 /UG_TITLE=ESTs BI298817 1374787_at BI282169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282169 /DB_XREF=gi:14932654 /DB_XREF=UI-R-CU0s-cbx-d-08-0-UI.s1 /CLONE=UI-R-CU0s-cbx-d-08-0-UI /FEA=EST /CNT=7 /TID=Rn.28782.1 /TIER=Stack /STK=6 /UG=Rn.28782 /UG_TITLE=ESTs BI282169 1374788_at AI235252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235252 /DB_XREF=gi:3828758 /DB_XREF=EST231814 /CLONE=ROVCP42 /FEA=EST /CNT=7 /TID=Rn.7721.1 /TIER=Stack /STK=6 /UG=Rn.7721 /UG_TITLE=ESTs, Highly similar to p53 tumor suppressor-binding protein 1 (H.sapiens) AI235252 0005622 // intracellular // inferred from electronic annotation 1374789_at BF550398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550398 /DB_XREF=gi:11660128 /DB_XREF=UI-R-A1-ef-h-10-0-UI.r1 /CLONE=UI-R-A1-ef-h-10-0-UI /FEA=EST /CNT=7 /TID=Rn.15476.1 /TIER=Stack /STK=6 /UG=Rn.15476 /UG_TITLE=ESTs BF550398 1374790_at AW433892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433892 /DB_XREF=gi:6965199 /DB_XREF=UI-R-BJ0p-afm-g-11-0-UI.s1 /CLONE=UI-R-BJ0p-afm-g-11-0-UI /FEA=EST /CNT=7 /TID=Rn.2814.1 /TIER=Stack /STK=6 /UG=Rn.2814 /UG_TITLE=ESTs, Weakly similar to T45062 hypothetical protein c316G12.3 (H.sapiens) AW433892 N-acetylglucosamine-1-phosphate transferase, gamma subunit Gnptg 287134 NM_001100493 0016256 // N-glycan processing to lysosome // inferred from direct assay 0000139 // Golgi membrane // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from direct assay 0001948 // glycoprotein binding // inferred by curator /// 0003976 // UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1374791_at BF282933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282933 /DB_XREF=gi:11214003 /DB_XREF=EST447524 /CLONE=RGIDV21 /FEA=EST /CNT=7 /TID=Rn.22867.1 /TIER=Stack /STK=6 /UG=Rn.22867 /UG_TITLE=ESTs BF282933 sorting nexin 21-like /// sorting nexin 21-like LOC100362940 /// LOC100364126 100362940 /// 100364126 XM_002726281 /// XM_002729253 0007154 // cell communication // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1374792_at BM389058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389058 /DB_XREF=gi:18189111 /DB_XREF=UI-R-DZ0-cko-j-01-0-UI.s1 /CLONE=UI-R-DZ0-cko-j-01-0-UI /FEA=EST /CNT=7 /TID=Rn.31940.1 /TIER=Stack /STK=6 /UG=Rn.31940 /UG_TITLE=ESTs, Weakly similar to T08718 hypothetical protein DKFZp566B153.1 (H.sapiens) BM389058 nucleolar protein 7 Nol7 498727 XR_085656 /// XR_086064 0005634 // nucleus // inferred from electronic annotation 1374793_at BE113663 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113663 /DB_XREF=gi:8505768 /DB_XREF=UI-R-BJ1-awg-h-07-0-UI.s1 /CLONE=UI-R-BJ1-awg-h-07-0-UI /FEA=EST /CNT=7 /TID=Rn.12973.1 /TIER=Stack /STK=6 /UG=Rn.12973 /UG_TITLE=ESTs, Weakly similar to LIS1 MOUSE PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB ALPHA SUBUNIT (R.norvegicus) BE113663 WD repeat domain 3 Wdr3 310720 NM_001107705 1374794_at BF396282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396282 /DB_XREF=gi:11381254 /DB_XREF=UI-R-BS2-bdw-d-02-0-UI.s1 /CLONE=UI-R-BS2-bdw-d-02-0-UI /FEA=EST /CNT=7 /TID=Rn.45205.1 /TIER=Stack /STK=6 /UG=Rn.45205 /UG_TITLE=ESTs BF396282 kinesin family member 15 Kif15 353302 NM_181635 0007018 // microtubule-based movement // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1374795_at AA891859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891859 /DB_XREF=gi:3018738 /DB_XREF=EST195662 /CLONE=RKIAH79 /FEA=EST /CNT=7 /TID=Rn.3920.1 /TIER=Stack /STK=6 /UG=Rn.3920 /UG_TITLE=ESTs AA891859 1374796_at AI413058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI413058 /DB_XREF=gi:4256562 /DB_XREF=EST241359 /CLONE=RBREC03 /FEA=EST /CNT=7 /TID=Rn.8412.1 /TIER=Stack /STK=6 /UG=Rn.8412 /UG_TITLE=ESTs AI413058 sarcoglycan, beta (dystrophin-associated glycoprotein) Sgcb 680229 NM_001191068 /// XM_001056227 /// XM_002724956 0007010 // cytoskeleton organization // inferred from electronic annotation 0016010 // dystrophin-associated glycoprotein complex // not recorded /// 0016012 // sarcoglycan complex // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1374797_at BM391920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391920 /DB_XREF=gi:18191973 /DB_XREF=UI-R-DM1-ckc-f-17-0-UI.s2 /CLONE=UI-R-DM1-ckc-f-17-0-UI /FEA=EST /CNT=7 /TID=Rn.34587.1 /TIER=Stack /STK=6 /UG=Rn.34587 /UG_TITLE=ESTs BM391920 ELL associated factor 1 Eaf1 306261 NM_001107293 0005515 // protein binding // not recorded 1374798_at AA924151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924151 /DB_XREF=gi:4234291 /DB_XREF=UI-R-E0-bp-a-01-0-UI.s1 /CLONE=UI-R-E0-bp-a-01-0-UI /FEA=EST /CNT=7 /TID=Rn.8215.1 /TIER=Stack /STK=6 /UG=Rn.8215 /UG_TITLE=ESTs AA924151 torsin A interacting protein 2 Tor1aip2 304881 NM_001165896 /// NM_001165897 /// NM_199100 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374799_at AI407418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407418 /DB_XREF=gi:4250922 /DB_XREF=EST235707 /CLONE=ROVED60 /FEA=EST /CNT=7 /TID=Rn.7870.1 /TIER=Stack /STK=6 /UG=Rn.7870 /UG_TITLE=ESTs AI407418 non-SMC condensin I complex, subunit D2 Ncapd2 362438 XM_001065923 /// XM_575668 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007076 // mitotic chromosome condensation // not recorded /// 0030261 // chromosome condensation // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000228 // nuclear chromosome // not recorded /// 0000793 // condensed chromosome // not recorded /// 0000796 // condensin complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0045120 // pronucleus // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042393 // histone binding // not recorded 1374800_at BI303627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303627 /DB_XREF=gi:14979907 /DB_XREF=UI-R-DQ0-cja-h-18-0-UI.s1 /CLONE=UI-R-DQ0-cja-h-18-0-UI /FEA=EST /CNT=7 /TID=Rn.19572.1 /TIER=Stack /STK=6 /UG=Rn.19572 /UG_TITLE=ESTs BI303627 1374801_at AW915643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915643 /DB_XREF=gi:8081348 /DB_XREF=EST346947 /CLONE=RGICY81 /FEA=EST /CNT=7 /TID=Rn.6793.1 /TIER=Stack /STK=6 /UG=Rn.6793 /UG_TITLE=ESTs AW915643 1374802_at AI010721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010721 /DB_XREF=gi:3224553 /DB_XREF=EST205172 /CLONE=RMUAQ52 /FEA=EST /CNT=7 /TID=Rn.17621.1 /TIER=Stack /STK=6 /UG=Rn.17621 /UG_TITLE=ESTs AI010721 HAUS augmin-like complex, subunit 4 Haus4 305882 NM_001013995 0051225 // spindle assembly // inferred from electronic annotation /// 0051225 // spindle assembly // not recorded /// 0051297 // centrosome organization // inferred from electronic annotation /// 0051297 // centrosome organization // not recorded 0070652 // HAUS complex // inferred from electronic annotation /// 0070652 // HAUS complex // not recorded 1374803_at BG374219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374219 /DB_XREF=gi:13298691 /DB_XREF=UI-R-CV1-bsm-g-06-0-UI.s1 /CLONE=UI-R-CV1-bsm-g-06-0-UI /FEA=EST /CNT=7 /TID=Rn.34411.1 /TIER=Stack /STK=6 /UG=Rn.34411 /UG_TITLE=ESTs BG374219 1374804_at AI060050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060050 /DB_XREF=gi:3333827 /DB_XREF=UI-R-C1-kz-d-11-0-UI.s1 /CLONE=UI-R-C1-kz-d-11-0-UI /FEA=EST /CNT=7 /TID=Rn.18964.1 /TIER=Stack /STK=6 /UG=Rn.18964 /UG_TITLE=ESTs, Highly similar to NGP1_HUMAN AUTOANTIGEN NGP-1 (H.sapiens) AI060050 guanine nucleotide binding protein-like 2 (nucleolar) Gnl2 362593 NM_001025736 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1374805_at AW251849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251849 /DB_XREF=gi:6595440 /DB_XREF=UI-R-BJ0-adl-f-09-0-UI.s1 /CLONE=UI-R-BJ0-adl-f-09-0-UI /FEA=EST /CNT=7 /TID=Rn.8559.1 /TIER=Stack /STK=6 /UG=Rn.8559 /UG_TITLE=ESTs, Weakly similar to T32924 hypothetical protein K09H9.2 - Caenorhabditis elegans (C.elegans) AW251849 defective in sister chromatid cohesion 1 homolog (S. cerevisiae) Dscc1 299933 XM_002726929 /// XM_216934 0034088 // maintenance of mitotic sister chromatid cohesion // not recorded 0000775 // chromosome, centromeric region // not recorded /// 0000785 // chromatin // not recorded /// 0005654 // nucleoplasm // not recorded 0005515 // protein binding // not recorded 1374806_at BI286166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286166 /DB_XREF=gi:14940544 /DB_XREF=UI-R-DE0-cah-e-06-0-UI.s1 /CLONE=UI-R-DE0-cah-e-06-0-UI /FEA=EST /CNT=7 /TID=Rn.41586.1 /TIER=Stack /STK=6 /UG=Rn.41586 /UG_TITLE=ESTs BI286166 stratifin Sfn 313017 XM_001065560 /// XM_232745 0000079 // regulation of cyclin-dependent protein kinase activity // not recorded /// 0000079 // regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // not recorded /// 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008630 // DNA damage response, signal transduction resulting in induction of apoptosis // not recorded /// 0008630 // DNA damage response, signal transduction resulting in induction of apoptosis // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // not recorded /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // not recorded /// 0030307 // positive regulation of cell growth // inferred from electronic annotation /// 0043154 // negative regulation of caspase activity // not recorded /// 0043154 // negative regulation of caspase activity // inferred from electronic annotation /// 0043588 // skin development // not recorded /// 0043588 // skin development // inferred from electronic annotation /// 0043616 // keratinocyte proliferation // not recorded /// 0043616 // keratinocyte proliferation // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation 1374807_at AI230067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230067 /DB_XREF=gi:3813954 /DB_XREF=EST226762 /CLONE=REMCQ55 /FEA=EST /CNT=7 /TID=Rn.20023.1 /TIER=Stack /STK=6 /UG=Rn.20023 /UG_TITLE=ESTs, Weakly similar to T28916 hypothetical protein C13F10.5 - Caenorhabditis elegans (C.elegans) AI230067 similar to RIKEN cDNA 1810063B07 gene RGD1310877 305667 XM_001063794 /// XM_223775 1374808_at BG375471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375471 /DB_XREF=gi:13299943 /DB_XREF=UI-R-CV1-btb-g-03-0-UI.s1 /CLONE=UI-R-CV1-btb-g-03-0-UI /FEA=EST /CNT=7 /TID=Rn.12702.1 /TIER=Stack /STK=6 /UG=Rn.12702 /UG_TITLE=ESTs BG375471 similar to hypothetical protein FLJ21156 RGD1309823 313525 XR_006864 /// XR_085840 1374809_at BG672598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672598 /DB_XREF=gi:13894697 /DB_XREF=DRNCNA07 /CLONE=DRNCNA07 /FEA=EST /CNT=7 /TID=Rn.16806.1 /TIER=Stack /STK=6 /UG=Rn.16806 /UG_TITLE=ESTs BG672598 1374810_at BI293282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293282 /DB_XREF=gi:14954639 /DB_XREF=UI-R-DK0-cdn-b-06-0-UI.s1 /CLONE=UI-R-DK0-cdn-b-06-0-UI /FEA=EST /CNT=7 /TID=Rn.13088.1 /TIER=Stack /STK=6 /UG=Rn.13088 /UG_TITLE=ESTs BI293282 1374811_at AA858705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858705 /DB_XREF=gi:4228898 /DB_XREF=UI-R-A0-be-a-03-0-UI.s1 /CLONE=UI-R-A0-be-a-03-0-UI /FEA=EST /CNT=7 /TID=Rn.2356.1 /TIER=Stack /STK=6 /UG=Rn.2356 /UG_TITLE=ESTs AA858705 ribosomal protein S6 kinase polypeptide 2 Rps6ka2 117269 NM_057128 0000089 // mitotic metaphase // not recorded /// 0001556 // oocyte maturation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // not recorded 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded /// 0005819 // spindle // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1374812_at AA818197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818197 /DB_XREF=gi:4198710 /DB_XREF=UI-R-A0-ai-g-09-0-UI.s1 /CLONE=UI-R-A0-ai-g-09-0-UI /FEA=EST /CNT=7 /TID=Rn.16476.1 /TIER=Stack /STK=6 /UG=Rn.16476 /UG_TITLE=ESTs AA818197 protein tyrosine phosphatase, non-receptor type 13 Ptpn13 498331 NM_001100789 /// XM_001059696 /// XM_213997 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0043005 // neuron projection // inferred from direct assay /// 0044297 // cell body // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1374813_at BF409617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409617 /DB_XREF=gi:11397592 /DB_XREF=UI-R-CA1-blm-e-05-0-UI.s1 /CLONE=UI-R-CA1-blm-e-05-0-UI /FEA=EST /CNT=7 /TID=Rn.63374.1 /TIER=Stack /STK=6 /UG=Rn.63374 /UG_TITLE=ESTs BF409617 1374814_at AI101530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101530 /DB_XREF=gi:3706418 /DB_XREF=EST210819 /CLONE=RBRBR77 /FEA=EST /CNT=7 /TID=Rn.28078.1 /TIER=Stack /STK=6 /UG=Rn.28078 /UG_TITLE=ESTs AI101530 1374815_at AA997695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997695 /DB_XREF=gi:4280977 /DB_XREF=UI-R-C0-hp-e-12-0-UI.s1 /CLONE=UI-R-C0-hp-e-12-0-UI /FEA=EST /CNT=7 /TID=Rn.7705.1 /TIER=Stack /STK=6 /UG=Rn.7705 /UG_TITLE=ESTs, Weakly similar to ML64 MOUSE MLN 64 PROTEIN (M.musculus) AA997695 STARD3 N-terminal like Stard3nl 291182 NM_001008298 1374816_at AI103939 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103939 /DB_XREF=gi:3704876 /DB_XREF=EST213228 /CLONE=RHEBV37 /FEA=EST /CNT=7 /TID=Rn.2307.1 /TIER=Stack /STK=6 /UG=Rn.2307 /UG_TITLE=ESTs AI103939 GRINL1A complex locus Gcom1 363091 NM_001014211 1374817_at BE103235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103235 /DB_XREF=gi:8495334 /DB_XREF=UI-R-BX0-aqy-b-10-0-UI.s1 /CLONE=UI-R-BX0-aqy-b-10-0-UI /FEA=EST /CNT=7 /TID=Rn.19071.1 /TIER=Stack /STK=6 /UG=Rn.19071 /UG_TITLE=ESTs BE103235 1374818_at BM382837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM382837 /DB_XREF=gi:18182890 /DB_XREF=UI-R-BT1-bko-d-02-0-UI.s1 /CLONE=UI-R-BT1-bko-d-02-0-UI /FEA=EST /CNT=7 /TID=Rn.19736.1 /TIER=Stack /STK=6 /UG=Rn.19736 /UG_TITLE=ESTs BM382837 neurexophilin 3 Nxph3 59315 NM_021679 0005576 // extracellular region // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded 1374819_at AI599945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599945 /DB_XREF=gi:4608993 /DB_XREF=EST251648 /CLONE=REMEL14 /FEA=EST /CNT=7 /TID=Rn.16845.1 /TIER=Stack /STK=6 /UG=Rn.16845 /UG_TITLE=ESTs AI599945 1374820_at AI598946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598946 /DB_XREF=gi:4607994 /DB_XREF=EST250649 /CLONE=REMDY73 /FEA=EST /CNT=7 /TID=Rn.239.1 /TIER=Stack /STK=6 /UG=Rn.239 /UG_TITLE=ESTs AI598946 1374821_at BF399587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399587 /DB_XREF=gi:11384595 /DB_XREF=UI-R-CA0-bht-g-01-0-UI.s2 /CLONE=UI-R-CA0-bht-g-01-0-UI /FEA=EST /CNT=7 /TID=Rn.20526.1 /TIER=Stack /STK=6 /UG=Rn.20526 /UG_TITLE=ESTs BF399587 1374822_at BE118465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118465 /DB_XREF=gi:8510570 /DB_XREF=UI-R-BJ1-azp-h-08-0-UI.s1 /CLONE=UI-R-BJ1-azp-h-08-0-UI /FEA=EST /CNT=7 /TID=Rn.13477.1 /TIER=Stack /STK=6 /UG=Rn.13477 /UG_TITLE=ESTs BE118465 1374823_at BI291651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291651 /DB_XREF=gi:14951396 /DB_XREF=UI-R-DN0-ciu-n-11-0-UI.s1 /CLONE=UI-R-DN0-ciu-n-11-0-UI /FEA=EST /CNT=7 /TID=Rn.15179.1 /TIER=Stack /STK=6 /UG=Rn.15179 /UG_TITLE=ESTs BI291651 Ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) Arih1 300756 NM_001013108 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374824_at BG373086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373086 /DB_XREF=gi:13269623 /DB_XREF=UI-R-CV1-bsf-d-02-0-UI.s1 /CLONE=UI-R-CV1-bsf-d-02-0-UI /FEA=EST /CNT=7 /TID=Rn.12288.1 /TIER=Stack /STK=6 /UG=Rn.12288 /UG_TITLE=ESTs, Weakly similar to T05G5.8.p (Caenorhabditis elegans) (C.elegans) BG373086 vacuolar protein sorting 53 homolog (S. cerevisiae) Vps53 287535 NM_001105813 1374825_at BG380338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380338 /DB_XREF=gi:13304810 /DB_XREF=UI-R-CT0-btw-a-02-0-UI.s1 /CLONE=UI-R-CT0-btw-a-02-0-UI /FEA=EST /CNT=7 /TID=Rn.30285.1 /TIER=Stack /STK=6 /UG=Rn.30285 /UG_TITLE=ESTs, Weakly similar to I52657 gene SEZ-6 (M.musculus) BG380338 seizure related 6 homolog (mouse)-like 2 Sez6l2 308988 NM_001107550 1374826_at BE118972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118972 /DB_XREF=gi:8511077 /DB_XREF=UI-R-BS1-azw-h-11-0-UI.s1 /CLONE=UI-R-BS1-azw-h-11-0-UI /FEA=EST /CNT=7 /TID=Rn.15239.1 /TIER=Stack /STK=6 /UG=Rn.15239 /UG_TITLE=ESTs BE118972 1374827_at BI276137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276137 /DB_XREF=gi:14920760 /DB_XREF=UI-R-CX0-bwz-e-06-0-UI.s1 /CLONE=UI-R-CX0-bwz-e-06-0-UI /FEA=EST /CNT=7 /TID=Rn.7781.1 /TIER=Stack /STK=6 /UG=Rn.7781 /UG_TITLE=ESTs BI276137 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 Ndst2 114002 NM_001105740 0009987 // cellular process // not recorded /// 0015012 // heparan sulfate proteoglycan biosynthetic process // not recorded 0005794 // Golgi apparatus // not recorded 0008146 // sulfotransferase activity // inferred from electronic annotation 1374828_at AI045590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045590 /DB_XREF=gi:3292409 /DB_XREF=UI-R-C1-kj-f-03-0-UI.s1 /CLONE=UI-R-C1-kj-f-03-0-UI /FEA=EST /CNT=7 /TID=Rn.9257.1 /TIER=Stack /STK=6 /UG=Rn.9257 /UG_TITLE=ESTs, Weakly similar to ER60 RAT PROBABLE PROTEIN DISULFIDE ISOMERASE ER-60 PRECURSOR (R.norvegicus) AI045590 protein disulfide isomerase family A, member 5 Pdia5 360722 NM_001014125 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0006950 // response to stress // not recorded /// 0006950 // response to stress // inferred from sequence or structural similarity /// 0006950 // response to stress // inferred from electronic annotation /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 0003756 // protein disulfide isomerase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1374829_at BF395579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395579 /DB_XREF=gi:11380549 /DB_XREF=UI-R-CM0-bjo-f-06-0-UI.s1 /CLONE=UI-R-CM0-bjo-f-06-0-UI /FEA=EST /CNT=7 /TID=Rn.16598.1 /TIER=Stack /STK=6 /UG=Rn.16598 /UG_TITLE=ESTs BF395579 serum response factor (c-fos serum response element-binding transcription factor) Srf 501099 NM_001109302 0001569 // patterning of blood vessels // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0001707 // mesoderm formation // not recorded /// 0001829 // trophectodermal cell differentiation // not recorded /// 0001947 // heart looping // not recorded /// 0002042 // cell migration involved in sprouting angiogenesis // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007015 // actin filament organization // not recorded /// 0007369 // gastrulation // not recorded /// 0007507 // heart development // not recorded /// 0007616 // long-term memory // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0009725 // response to hormone stimulus // not recorded /// 0010735 // positive regulation of transcription via serum response element binding // not recorded /// 0030155 // regulation of cell adhesion // not recorded /// 0030336 // negative regulation of cell migration // inferred from mutant phenotype /// 0034097 // response to cytokine stimulus // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // not recorded /// 0045941 // positive regulation of transcription // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045987 // positive regulation of smooth muscle contraction // not recorded /// 0046716 // muscle cell homeostasis // not recorded /// 0048589 // developmental growth // not recorded /// 0051491 // positive regulation of filopodium assembly // not recorded /// 0060261 // positive regulation of transcription initiation from RNA polymerase II promoter // not recorded /// 0090009 // primitive streak formation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003704 // specific RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0010736 // serum response element binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1374830_at AA946242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946242 /DB_XREF=gi:4132725 /DB_XREF=EST201741 /CLONE=RLUBC76 /FEA=EST /CNT=7 /TID=Rn.30331.1 /TIER=Stack /STK=6 /UG=Rn.30331 /UG_TITLE=ESTs AA946242 coiled-coil domain containing 3 Ccdc3 498795 XM_001071191 /// XM_574081 0005783 // endoplasmic reticulum // not recorded 1374831_at AI172579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172579 /DB_XREF=gi:3712619 /DB_XREF=UI-R-C2p-nz-h-05-0-UI.s1 /CLONE=UI-R-C2p-nz-h-05-0-UI /FEA=EST /CNT=7 /TID=Rn.23728.1 /TIER=Stack /STK=6 /UG=Rn.23728 /UG_TITLE=ESTs AI172579 ATH1, acid trehalase-like 1 (yeast) Athl1 309103 XM_002725745 /// XM_002728831 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation 1374832_at BI299921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299921 /DB_XREF=gi:14976201 /DB_XREF=UI-R-CV2-chy-h-02-0-UI.s1 /CLONE=UI-R-CV2-chy-h-02-0-UI /FEA=EST /CNT=7 /TID=Rn.67004.1 /TIER=Stack /STK=6 /UG=Rn.67004 /UG_TITLE=ESTs BI299921 1374833_at BF290953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290953 /DB_XREF=gi:11222023 /DB_XREF=EST455544 /CLONE=RGIIG77 /FEA=EST /CNT=7 /TID=Rn.24673.1 /TIER=Stack /STK=6 /UG=Rn.24673 /UG_TITLE=ESTs BF290953 1374834_at AA943520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943520 /DB_XREF=gi:3103436 /DB_XREF=EST199019 /CLONE=RBRAK93 /FEA=EST /CNT=7 /TID=Rn.2616.1 /TIER=Stack /STK=6 /UG=Rn.2616 /UG_TITLE=ESTs, Weakly similar to A34418 H-2 region II binding protein - mouse (M.musculus) AA943520 splicing factor 3b, subunit 4 Sf3b4 295270 NM_001011951 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374835_at AA944485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944485 /DB_XREF=gi:3104401 /DB_XREF=EST199984 /CLONE=REMAJ87 /FEA=EST /CNT=7 /TID=Rn.15513.1 /TIER=Stack /STK=6 /UG=Rn.15513 /UG_TITLE=ESTs AA944485 1374836_at AA964554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964554 /DB_XREF=gi:4279428 /DB_XREF=UI-R-E1-go-b-05-0-UI.s1 /CLONE=UI-R-E1-go-b-05-0-UI /FEA=EST /CNT=7 /TID=Rn.11840.1 /TIER=Stack /STK=6 /UG=Rn.11840 /UG_TITLE=ESTs, Weakly similar to S69026 hypothetical protein YPR137w - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AA964554 ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast) Rrp9 363134 NM_001108778 1374837_at BE117453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117453 /DB_XREF=gi:8509558 /DB_XREF=UI-R-BS1-ayo-a-01-0-UI.s1 /CLONE=UI-R-BS1-ayo-a-01-0-UI /FEA=EST /CNT=7 /TID=Rn.16259.1 /TIER=Stack /STK=6 /UG=Rn.16259 /UG_TITLE=ESTs, Highly similar to member of BCL7 gene family (M.musculus) BE117453 B-cell CLL/lymphoma 7C Bcl7c 293514 NM_001106298 1374838_at BI293504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293504 /DB_XREF=gi:14955062 /DB_XREF=UI-R-DK0-cdr-c-04-0-UI.s1 /CLONE=UI-R-DK0-cdr-c-04-0-UI /FEA=EST /CNT=7 /TID=Rn.27561.1 /TIER=Stack /STK=6 /UG=Rn.27561 /UG_TITLE=ESTs, Weakly similar to LY10_HUMAN LYSP100 PROTEIN (H.sapiens) BI293504 SP140 nuclear body protein Sp140 316580 NM_001012133 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374839_at BE329255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329255 /DB_XREF=gi:9203031 /DB_XREF=hq34a04.x1 /CLONE=IMAGE:3121230 /FEA=EST /CNT=7 /TID=Rn.43842.1 /TIER=Stack /STK=6 /UG=Rn.43842 /UG_TITLE=ESTs BE329255 spastic paraplegia 7 homolog (human) Spg7 353231 NM_181388 0006508 // proteolysis // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0008089 // anterograde axon cargo transport // not recorded /// 0030163 // protein catabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374840_at BG377716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377716 /DB_XREF=gi:13302188 /DB_XREF=UI-R-CU0-bva-b-11-0-UI.s1 /CLONE=UI-R-CU0-bva-b-11-0-UI /FEA=EST /CNT=7 /TID=Rn.41174.1 /TIER=Stack /STK=6 /UG=Rn.41174 /UG_TITLE=ESTs, Weakly similar to CYPB RAT PEPTIDYL-PROLYL CIS-TRANS ISOMERASE B PRECURSOR (R.norvegicus) BG377716 1374841_at AI237644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237644 /DB_XREF=gi:3831150 /DB_XREF=EST234206 /CLONE=RPLDB81 /FEA=EST /CNT=7 /TID=Rn.15356.1 /TIER=Stack /STK=6 /UG=Rn.15356 /UG_TITLE=ESTs AI237644 similar to RIKEN cDNA 2410004B18 RGD1560065 499724 NM_001134616 1374842_at BF287009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287009 /DB_XREF=gi:11218079 /DB_XREF=EST451600 /CLONE=RGIFX85 /FEA=EST /CNT=7 /TID=Rn.36685.1 /TIER=Stack /STK=6 /UG=Rn.36685 /UG_TITLE=ESTs, Highly similar to CCAAT-BINDING FACTOR (M.musculus) BF287009 CCAAT/enhancer binding protein zeta Cebpz 362686 NM_001108701 0005634 // nucleus // inferred from direct assay 0005488 // binding // inferred from electronic annotation 1374843_at BE095692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095692 /DB_XREF=gi:8486623 /DB_XREF=UI-R-BU0-aoy-b-05-0-UI.s1 /CLONE=UI-R-BU0-aoy-b-05-0-UI /FEA=EST /CNT=7 /TID=Rn.34706.1 /TIER=Stack /STK=6 /UG=Rn.34706 /UG_TITLE=ESTs BE095692 chromobox homolog 3 (HP1 gamma homolog, Drosophila) Cbx3 297093 NM_001008313 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0000785 // chromatin // inferred from electronic annotation /// 0000785 // chromatin // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005719 // nuclear euchromatin // not recorded /// 0005720 // nuclear heterochromatin // not recorded /// 0005819 // spindle // not recorded /// 0010369 // chromocenter // not recorded 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016565 // general transcriptional repressor activity // not recorded /// 0019899 // enzyme binding // not recorded /// 0019904 // protein domain specific binding // not recorded 1374844_at BF284573 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284573 /DB_XREF=gi:11215643 /DB_XREF=EST449164 /CLONE=RGIES37 /FEA=EST /CNT=7 /TID=Rn.15446.1 /TIER=Stack /STK=6 /UG=Rn.15446 /UG_TITLE=ESTs, Moderately similar to S20710 hypothetical protein, 16K - mouse (M.musculus) BF284573 1374845_at AI176367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176367 /DB_XREF=gi:3727005 /DB_XREF=EST219950 /CLONE=ROVBQ75 /FEA=EST /CNT=7 /TID=Rn.17456.1 /TIER=Stack /STK=6 /UG=Rn.17456 /UG_TITLE=ESTs AI176367 1374846_at AI230884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230884 /DB_XREF=gi:3814771 /DB_XREF=EST227579 /CLONE=REMDC41 /FEA=EST /CNT=7 /TID=Rn.18867.1 /TIER=Stack /STK=6 /UG=Rn.18867 /UG_TITLE=ESTs AI230884 hexamethylene bis-acetamide inducible 1 Hexim1 498008 NM_001025136 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // not recorded /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // inferred from sequence or structural similarity /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0004861 // cyclin-dependent protein kinase inhibitor activity // not recorded /// 0004861 // cyclin-dependent protein kinase inhibitor activity // inferred from sequence or structural similarity /// 0004861 // cyclin-dependent protein kinase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // not recorded /// 0017069 // snRNA binding // not recorded /// 0017069 // snRNA binding // inferred from sequence or structural similarity /// 0017069 // snRNA binding // inferred from electronic annotation 1374847_at AI177438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177438 /DB_XREF=gi:3728076 /DB_XREF=EST221064 /CLONE=RPLBZ35 /FEA=EST /CNT=7 /TID=Rn.21404.1 /TIER=Stack /STK=6 /UG=Rn.21404 /UG_TITLE=ESTs, Highly similar to I54388 LZTR-1 (H.sapiens) AI177438 leucine-zipper-like transcription regulator 1 Lztr1 360745 NM_001108326 0005515 // protein binding // inferred from electronic annotation 1374848_at AI599867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599867 /DB_XREF=gi:4608915 /DB_XREF=EST251570 /CLONE=REMEK01 /FEA=EST /CNT=7 /TID=Rn.9497.1 /TIER=Stack /STK=6 /UG=Rn.9497 /UG_TITLE=ESTs AI599867 general transcription factor IIIC, polypeptide 6, alpha Gtf3c6 361858 NM_001108537 0006351 // transcription, DNA-dependent // inferred from electronic annotation /// 0006351 // transcription, DNA-dependent // not recorded 0000127 // transcription factor TFIIIC complex // inferred from electronic annotation /// 0000127 // transcription factor TFIIIC complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003709 // RNA polymerase III transcription factor activity // inferred from electronic annotation /// 0003709 // RNA polymerase III transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374849_at BF285745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285745 /DB_XREF=gi:11216815 /DB_XREF=EST450336 /CLONE=RGIFI66 /FEA=EST /CNT=7 /TID=Rn.23850.1 /TIER=Stack /STK=6 /UG=Rn.23850 /UG_TITLE=ESTs, Weakly similar to ATS1_RAT ADAM-TS 1 PRECURSOR (A DISINTEGRIN AND METALLOPROTEINASE WITH THROMBOSPONDIN MOTIFS 1) (ADAMTS-1) (ADAM-TS1) (R.norvegicus) BF285745 ADAM metallopeptidase with thrombospondin type 1 motif, 7 Adamts7 315879 NM_001047101 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // not recorded /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374850_at AI113301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113301 /DB_XREF=gi:3513250 /DB_XREF=UI-R-C2p-nr-b-09-0-UI.s1 /CLONE=UI-R-C2p-nr-b-09-0-UI /FEA=EST /CNT=7 /TID=Rn.26987.1 /TIER=Stack /STK=6 /UG=Rn.26987 /UG_TITLE=ESTs, Weakly similar to S21348 probable pol polyprotein-related protein 4 - rat (R.norvegicus) AI113301 1374851_at BG376202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376202 /DB_XREF=gi:13300674 /DB_XREF=UI-R-CT0-bun-f-11-0-UI.s1 /CLONE=UI-R-CT0-bun-f-11-0-UI /FEA=EST /CNT=7 /TID=Rn.23452.1 /TIER=Stack /STK=6 /UG=Rn.23452 /UG_TITLE=ESTs, Highly similar to T46497 hypothetical protein DKFZp434H247.1 (H.sapiens) BG376202 mediator complex subunit 29 Med29 292751 NM_001106237 0016592 // mediator complex // not recorded 0005515 // protein binding // not recorded 1374852_at AI407613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407613 /DB_XREF=gi:4251117 /DB_XREF=EST235903 /CLONE=ROVEA64 /FEA=EST /CNT=7 /TID=Rn.29869.1 /TIER=Stack /STK=6 /UG=Rn.29869 /UG_TITLE=ESTs AI407613 RGD1559909 RGD1559909 362592 NM_001108678 1374853_at AI137833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137833 /DB_XREF=gi:3638610 /DB_XREF=UI-R-C0-if-a-11-0-UI.s1 /CLONE=UI-R-C0-if-a-11-0-UI /FEA=EST /CNT=7 /TID=Rn.27518.1 /TIER=Stack /STK=6 /UG=Rn.27518 /UG_TITLE=ESTs AI137833 biorientation of chromosomes in cell division 1 Bod1 287173 NM_001013854 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 1374854_at AA924658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924658 /DB_XREF=gi:4235849 /DB_XREF=UI-R-A1-dz-d-02-0-UI.s1 /CLONE=UI-R-A1-dz-d-02-0-UI /FEA=EST /CNT=7 /TID=Rn.15365.1 /TIER=Stack /STK=6 /UG=Rn.15365 /UG_TITLE=ESTs, Weakly similar to T25204 hypothetical protein T23G7.3 - Caenorhabditis elegans (C.elegans) AA924658 PIN2-interacting protein 1 Pinx1 305963 NM_001083337 0007004 // telomere maintenance via telomerase // inferred from electronic annotation /// 0007004 // telomere maintenance via telomerase // not recorded /// 0007080 // mitotic metaphase plate congression // not recorded 0000228 // nuclear chromosome // not recorded /// 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // not recorded /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0000781 // chromosome, telomeric region // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005819 // spindle // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0070034 // telomeric RNA binding // not recorded 1374855_at BI279017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279017 /DB_XREF=gi:14926428 /DB_XREF=UI-R-CZ0-byi-b-04-0-UI.s1 /CLONE=UI-R-CZ0-byi-b-04-0-UI /FEA=EST /CNT=7 /TID=Rn.34433.1 /TIER=Stack /STK=6 /UG=Rn.34433 /UG_TITLE=ESTs BI279017 period homolog 1 (Drosophila) Per1 287422 NM_001034125 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from expression pattern /// 0007623 // circadian rhythm // inferred from mutant phenotype /// 0007623 // circadian rhythm // not recorded /// 0009416 // response to light stimulus // inferred from electronic annotation /// 0009416 // response to light stimulus // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1374856_at BF396478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396478 /DB_XREF=gi:11381452 /DB_XREF=UI-R-BS2-bdy-f-05-0-UI.s1 /CLONE=UI-R-BS2-bdy-f-05-0-UI /FEA=EST /CNT=7 /TID=Rn.50645.1 /TIER=Stack /STK=6 /UG=Rn.50645 /UG_TITLE=ESTs BF396478 BCDIN3 domain containing Bcdin3d 363001 NM_001108751 0008168 // methyltransferase activity // inferred from electronic annotation 1374857_at AI579023 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI579023 /DB_XREF=gi:4563399 /DB_XREF=UI-R-AG0-wt-a-08-0-UI.s1 /CLONE=UI-R-AG0-wt-a-08-0-UI /FEA=EST /CNT=7 /TID=Rn.15522.1 /TIER=Stack /STK=6 /UG=Rn.15522 /UG_TITLE=ESTs AI579023 GAR1 ribonucleoprotein homolog (yeast) Gar1 499709 NM_001024306 0006364 // rRNA processing // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0015030 // Cajal body // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0031429 // box H/ACA snoRNP complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0009982 // pseudouridine synthase activity // inferred from electronic annotation /// 0030515 // snoRNA binding // inferred from electronic annotation 1374858_at BF420262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420262 /DB_XREF=gi:11408251 /DB_XREF=UI-R-BJ2-bpk-g-10-0-UI.s1 /CLONE=UI-R-BJ2-bpk-g-10-0-UI /FEA=EST /CNT=7 /TID=Rn.8622.1 /TIER=Stack /STK=6 /UG=Rn.8622 /UG_TITLE=ESTs, Weakly similar to DD15 MOUSE PUTATIVE PRE-MRNA SPLICING FACTOR RNA HELICASE (M.musculus) BF420262 DEAH (Asp-Glu-Ala-His) box polypeptide 29 LOC100362324 100362324 XM_002725889 /// XM_002729007 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1374859_at AI576252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576252 /DB_XREF=gi:4560628 /DB_XREF=UI-R-Y0-vb-a-01-0-UI.s1 /CLONE=UI-R-Y0-vb-a-01-0-UI /FEA=EST /CNT=7 /TID=Rn.39113.1 /TIER=Stack /STK=6 /UG=Rn.39113 /UG_TITLE=ESTs AI576252 1374860_at AW523507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523507 /DB_XREF=gi:7165892 /DB_XREF=UI-R-BO0-aho-h-10-0-UI.s1 /CLONE=UI-R-BO0-aho-h-10-0-UI /FEA=EST /CNT=7 /TID=Rn.19131.1 /TIER=Stack /STK=6 /UG=Rn.19131 /UG_TITLE=ESTs AW523507 hypothetical protein LOC684993 LOC684993 684993 NM_001109451 1374861_at AI175907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175907 /DB_XREF=gi:3726545 /DB_XREF=EST219479 /CLONE=ROVBH06 /FEA=EST /CNT=7 /TID=Rn.38683.1 /TIER=Stack /STK=6 /UG=Rn.38683 /UG_TITLE=ESTs, Weakly similar to GRG MOUSE GRG PROTEIN (R.norvegicus) AI175907 transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila) Tle2 299636 NM_001039013 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // not recorded 1374862_at AI764464 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764464 /DB_XREF=gi:5210357 /DB_XREF=UI-R-Y0-abj-g-02-0-UI.s1 /CLONE=UI-R-Y0-abj-g-02-0-UI /FEA=EST /CNT=7 /TID=Rn.11689.1 /TIER=Stack /STK=6 /UG=Rn.11689 /UG_TITLE=ESTs AI764464 phytanoyl-CoA 2-hydroxylase interacting protein Phyhip 290356 NM_001017376 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374863_at BI283223 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283223 /DB_XREF=gi:14934756 /DB_XREF=UI-R-DD0-bzs-e-12-0-UI.s1 /CLONE=UI-R-DD0-bzs-e-12-0-UI /FEA=EST /CNT=7 /TID=Rn.13092.1 /TIER=Stack /STK=6 /UG=Rn.13092 /UG_TITLE=ESTs, Weakly similar to RET1 RAT RETINOL-BINDING PROTEIN I, CELLULAR (R.norvegicus) BI283223 retinol binding protein 7, cellular Rbp7 362662 NM_001108693 0006810 // transport // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005501 // retinoid binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation 1374864_at BM390457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390457 /DB_XREF=gi:18190510 /DB_XREF=UI-R-CN1-cjq-f-12-0-UI.s1 /CLONE=UI-R-CN1-cjq-f-12-0-UI /FEA=EST /CNT=7 /TID=Rn.40942.2 /TIER=Stack /STK=6 /UG=Rn.40942 /LL=59107 /UG_GENE=Ltbp1 /UG_TITLE=transforming growth factor-beta (TGF-beta) masking protein large subunit BM390457 sprouty homolog 2 (Drosophila) Spry2 306141 NM_001012046 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009966 // regulation of signal transduction // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0034261 // negative regulation of Ras GTPase activity // inferred from electronic annotation /// 0034261 // negative regulation of Ras GTPase activity // not recorded /// 0040037 // negative regulation of fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0040037 // negative regulation of fibroblast growth factor receptor signaling pathway // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0043407 // negative regulation of MAP kinase activity // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // not recorded /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045165 // cell fate commitment // not recorded /// 0046580 // negative regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046580 // negative regulation of Ras protein signal transduction // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // not recorded /// 0051387 // negative regulation of nerve growth factor receptor signaling pathway // inferred from electronic annotation /// 0051387 // negative regulation of nerve growth factor receptor signaling pathway // not recorded /// 0060425 // lung morphogenesis // inferred from electronic annotation /// 0060425 // lung morphogenesis // not recorded /// 0060437 // lung growth // inferred from electronic annotation /// 0060437 // lung growth // not recorded /// 0060541 // respiratory system development // not recorded /// 0060541 // respiratory system development // inferred from electronic annotation /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070373 // negative regulation of ERK1 and ERK2 cascade // not recorded 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374865_at AW523662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523662 /DB_XREF=gi:7166047 /DB_XREF=UI-R-BO0-aic-f-12-0-UI.s1 /CLONE=UI-R-BO0-aic-f-12-0-UI /FEA=EST /CNT=7 /TID=Rn.45705.1 /TIER=Stack /STK=6 /UG=Rn.45705 /UG_TITLE=ESTs AW523662 similar to RIKEN cDNA 6030419C18 gene RGD1562618 501007 NM_001113791 1374866_at BF404936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404936 /DB_XREF=gi:11392911 /DB_XREF=UI-R-CA1-bij-e-04-0-UI.s1 /CLONE=UI-R-CA1-bij-e-04-0-UI /FEA=EST /CNT=7 /TID=Rn.59737.1 /TIER=Stack /STK=6 /UG=Rn.59737 /UG_TITLE=ESTs BF404936 1374867_at BI296536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296536 /DB_XREF=gi:14961056 /DB_XREF=UI-R-CV2-cgs-d-03-0-UI.s1 /CLONE=UI-R-CV2-cgs-d-03-0-UI /FEA=EST /CNT=7 /TID=Rn.73051.1 /TIER=Stack /STK=6 /UG=Rn.73051 /UG_TITLE=ESTs BI296536 1374868_at AW535434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535434 /DB_XREF=gi:7177848 /DB_XREF=UI-R-BS0-aof-b-05-0-UI.s1 /CLONE=UI-R-BS0-aof-b-05-0-UI /FEA=EST /CNT=7 /TID=Rn.13827.1 /TIER=Stack /STK=6 /UG=Rn.13827 /UG_TITLE=ESTs AW535434 1374869_at AA943361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943361 /DB_XREF=gi:3103277 /DB_XREF=EST198860 /CLONE=RBRAI64 /FEA=EST /CNT=7 /TID=Rn.7551.1 /TIER=Stack /STK=6 /UG=Rn.7551 /UG_TITLE=ESTs AA943361 1374870_at BF286402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF286402 /DB_XREF=gi:11217472 /DB_XREF=EST450993 /CLONE=RGIFP58 /FEA=EST /CNT=7 /TID=Rn.49762.1 /TIER=Stack /STK=6 /UG=Rn.49762 /UG_TITLE=ESTs BF286402 Collagen, type XXVII, alpha 1 Col27a1 298101 NM_198747 0007155 // cell adhesion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen // inferred from electronic annotation /// 0005583 // fibrillar collagen // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // inferred from electronic annotation 1374871_at AI233343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233343 /DB_XREF=gi:3817223 /DB_XREF=EST230031 /CLONE=RKIDD85 /FEA=EST /CNT=7 /TID=Rn.43088.1 /TIER=Stack /STK=6 /UG=Rn.43088 /UG_TITLE=ESTs AI233343 asparaginase like 1 Asrgl1 246307 NM_145089 0033345 // asparagine catabolic process via L-aspartate // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0003948 // N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity // inferred from direct assay /// 0004067 // asparaginase activity // inferred from direct assay /// 0004067 // asparaginase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1374872_at AW532114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532114 /DB_XREF=gi:7174528 /DB_XREF=UI-R-C4-ali-e-02-0-UI.s1 /CLONE=UI-R-C4-ali-e-02-0-UI /FEA=EST /CNT=7 /TID=Rn.38473.1 /TIER=Stack /STK=6 /UG=Rn.38473 /UG_TITLE=ESTs, Highly similar to F25B3.3 kinase like protein (H.sapiens) AW532114 RAS guanyl releasing protein 2 (calcium and DAG-regulated) Rasgrp2 361714 NM_001082977 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374873_at AW251378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251378 /DB_XREF=gi:6594969 /DB_XREF=UI-R-BJ0-adh-d-08-0-UI.s1 /CLONE=UI-R-BJ0-adh-d-08-0-UI /FEA=EST /CNT=7 /TID=Rn.38038.1 /TIER=Stack /STK=6 /UG=Rn.38038 /UG_TITLE=ESTs AW251378 1374874_at AI410818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410818 /DB_XREF=gi:4254322 /DB_XREF=EST239111 /CLONE=RHECZ43 /FEA=EST /CNT=7 /TID=Rn.43938.1 /TIER=Stack /STK=6 /UG=Rn.43938 /UG_TITLE=ESTs AI410818 similar to RIKEN cDNA 5730509K17 gene RGD1561042 498386 XR_085615 /// XR_086012 1374875_at AW915273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915273 /DB_XREF=gi:8080963 /DB_XREF=EST346577 /CLONE=RGICS45 /FEA=EST /CNT=7 /TID=Rn.23642.1 /TIER=Stack /STK=6 /UG=Rn.23642 /UG_TITLE=ESTs AW915273 1374876_at BE098368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098368 /DB_XREF=gi:8490232 /DB_XREF=UI-R-BJ1-asy-h-02-0-UI.s1 /CLONE=UI-R-BJ1-asy-h-02-0-UI /FEA=EST /CNT=7 /TID=Rn.17023.1 /TIER=Stack /STK=6 /UG=Rn.17023 /UG_TITLE=ESTs, Weakly similar to OBRG_RAT Leptin receptor gene-related protein (OB-R gene related protein) (OB-RGRP) (R.norvegicus) BE098368 leptin receptor overlapping transcript-like 1 Leprotl1 361160 NM_001013188 0004872 // receptor activity // inferred from electronic annotation 1374877_at AI112752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112752 /DB_XREF=gi:3512701 /DB_XREF=UI-R-Y0-mj-e-01-0-UI.s1 /CLONE=UI-R-Y0-mj-e-01-0-UI /FEA=EST /CNT=7 /TID=Rn.16779.1 /TIER=Stack /STK=6 /UG=Rn.16779 /UG_TITLE=ESTs, Weakly similar to JC5707 HYA22 protein (H.sapiens) AI112752 1374878_at H35236 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H35236 /DB_XREF=gi:980653 /DB_XREF=EST106488 /CLONE=RPCBD18 /FEA=EST /CNT=7 /TID=Rn.14671.1 /TIER=Stack /STK=6 /UG=Rn.14671 /UG_TITLE=ESTs, Highly similar to I39463 gene anonymous protein (H.sapiens) H35236 THO complex 5 Thoc5 360972 NM_001012153 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // not recorded /// 0006406 // mRNA export from nucleus // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045650 // negative regulation of macrophage differentiation // inferred from electronic annotation /// 0045650 // negative regulation of macrophage differentiation // not recorded /// 0046784 // intronless viral mRNA export from host nucleus // inferred from electronic annotation /// 0046784 // intronless viral mRNA export from host nucleus // not recorded /// 0051028 // mRNA transport // inferred from electronic annotation 0000346 // transcription export complex // not recorded /// 0000346 // transcription export complex // inferred from electronic annotation /// 0000347 // THO complex // not recorded /// 0000347 // THO complex // inferred from electronic annotation /// 0000445 // THO complex part of transcription export complex // inferred from electronic annotation /// 0000445 // THO complex part of transcription export complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374879_x_at AI228249 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228249 /DB_XREF=gi:4135331 /DB_XREF=EST224944 /CLONE=RBRCS40 /FEA=EST /CNT=7 /TID=Rn.11463.2 /TIER=Stack /STK=6 /UG=Rn.11463 /UG_TITLE=ESTs AI228249 La ribonucleoprotein domain family, member 5 Larp5 307070 NM_001107361 0003676 // nucleic acid binding // inferred from electronic annotation 1374880_at AW251285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251285 /DB_XREF=gi:6594876 /DB_XREF=UI-R-BJ0-adg-d-06-0-UI.s1 /CLONE=UI-R-BJ0-adg-d-06-0-UI /FEA=EST /CNT=12 /TID=Rn.17509.1 /TIER=Stack /STK=6 /UG=Rn.17509 /UG_TITLE=ESTs AW251285 1374881_at BF405945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405945 /DB_XREF=gi:11393920 /DB_XREF=UI-R-CA1-bii-h-03-0-UI.s1 /CLONE=UI-R-CA1-bii-h-03-0-UI /FEA=EST /CNT=11 /TID=Rn.15069.1 /TIER=Stack /STK=6 /UG=Rn.15069 /UG_TITLE=ESTs BF405945 1374882_at AW433860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433860 /DB_XREF=gi:6965167 /DB_XREF=UI-R-BJ0p-afm-e-03-0-UI.s1 /CLONE=UI-R-BJ0p-afm-e-03-0-UI /FEA=EST /CNT=11 /TID=Rn.48637.1 /TIER=Stack /STK=6 /UG=Rn.48637 /UG_TITLE=ESTs AW433860 similar to HT021 RGD1306063 289928 NM_001106026 1374883_at BF392344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392344 /DB_XREF=gi:11377201 /DB_XREF=UI-R-CA0-bfi-a-07-0-UI.s1 /CLONE=UI-R-CA0-bfi-a-07-0-UI /FEA=EST /CNT=11 /TID=Rn.12785.1 /TIER=Stack /STK=6 /UG=Rn.12785 /UG_TITLE=ESTs, Highly similar to MTR7_MOUSE MYOTUBULARIN RELATED PROTEIN 7 (M.musculus) BF392344 myotubularin related protein 7 Mtmr7 306490 NM_001107312 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005829 // cytosol // not recorded 0004437 // inositol or phosphatidylinositol phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1374884_at AI233712 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233712 /DB_XREF=gi:3817592 /DB_XREF=EST230400 /CLONE=RKIDJ22 /FEA=EST /CNT=10 /TID=Rn.15540.1 /TIER=Stack /STK=6 /UG=Rn.15540 /UG_TITLE=ESTs, Highly similar to P2CD_MOUSE PROTEIN PHOSPHATASE 2C DELTA ISOFORM (PP2C-DELTA) (P53-INDUCED PROTEIN PHOSPHATASE 1) (PROTEIN PHOSPHATASE MAGNESIUM-DEPENDENT 1 DELTA) (M.musculus) AI233712 protein phosphatase 1D magnesium-dependent, delta isoform Ppm1d 287585 NM_001105825 0000086 // G2/M transition of mitotic cell cycle // inferred from electronic annotation /// 0000086 // G2/M transition of mitotic cell cycle // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0009617 // response to bacterium // inferred from electronic annotation /// 0009617 // response to bacterium // not recorded 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374885_at AI172278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172278 /DB_XREF=gi:3712318 /DB_XREF=EST218279 /CLONE=RMUBX27 /FEA=EST /CNT=9 /TID=Rn.13442.2 /TIER=Stack /STK=6 /UG=Rn.13442 /UG_TITLE=ESTs, Weakly similar to S64253 probable membrane protein YGL231c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AI172278 solute carrier family 12, member 6 Slc12a6 691209 NM_001109630 0006811 // ion transport // inferred from electronic annotation /// 0006811 // ion transport // not recorded /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0015377 // cation:chloride symporter activity // inferred from electronic annotation /// 0015379 // potassium:chloride symporter activity // not recorded /// 0015379 // potassium:chloride symporter activity // inferred from electronic annotation 1374886_at BF402630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402630 /DB_XREF=gi:11390605 /DB_XREF=UI-R-CA0-bhm-g-03-0-UI.s1 /CLONE=UI-R-CA0-bhm-g-03-0-UI /FEA=EST /CNT=9 /TID=Rn.15293.1 /TIER=Stack /STK=6 /UG=Rn.15293 /UG_TITLE=ESTs, Weakly similar to PRS4 MOUSE 26S PROTEASE REGULATORY SUBUNIT 4 (R.norvegicus) BF402630 BCS1-like (yeast) Bcs1l 301514 NM_001007666 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0032981 // mitochondrial respiratory chain complex I assembly // inferred from electronic annotation /// 0032981 // mitochondrial respiratory chain complex I assembly // not recorded /// 0033617 // mitochondrial respiratory chain complex IV assembly // inferred from electronic annotation /// 0033617 // mitochondrial respiratory chain complex IV assembly // not recorded /// 0034551 // mitochondrial respiratory chain complex III assembly // inferred from electronic annotation /// 0034551 // mitochondrial respiratory chain complex III assembly // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1374887_at AA894189 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894189 /DB_XREF=gi:3021068 /DB_XREF=EST197992 /CLONE=RSPAS35 /FEA=EST /CNT=8 /TID=Rn.3748.1 /TIER=Stack /STK=6 /UG=Rn.3748 /UG_TITLE=ESTs AA894189 tubulin, gamma complex associated protein 6 Tubgcp6 362980 NM_001108748 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation 0000922 // spindle pole // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation 1374888_at AI317837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI317837 /DB_XREF=gi:4033104 /DB_XREF=EST234508 /CLONE=RPPAA47 /FEA=EST /CNT=8 /TID=Rn.6626.1 /TIER=Stack /STK=6 /UG=Rn.6626 /UG_TITLE=ESTs AI317837 coiled-coil domain containing 49 Ccdc49 360613 NM_001108295 1374889_at BI294745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294745 /DB_XREF=gi:14957498 /DB_XREF=UI-R-DK0-ceb-f-03-0-UI.s1 /CLONE=UI-R-DK0-ceb-f-03-0-UI /FEA=EST /CNT=8 /TID=Rn.17989.1 /TIER=Stack /STK=6 /UG=Rn.17989 /UG_TITLE=ESTs, Weakly similar to apoptosis inhibitor protein 3 (Rattus norvegicus) (R.norvegicus) BI294745 baculoviral IAP repeat-containing 7 Birc7 296468 XM_001058257 /// XM_238302 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374890_at AW533905 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533905 /DB_XREF=gi:7176366 /DB_XREF=UI-R-C4-alr-b-02-0-UI.s1 /CLONE=UI-R-C4-alr-b-02-0-UI /FEA=EST /CNT=8 /TID=Rn.7735.2 /TIER=Stack /STK=6 /UG=Rn.7735 /LL=25135 /UG_GENE=Ncl /UG_TITLE=Nucleolin AW533905 1374891_at BF406141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406141 /DB_XREF=gi:11394116 /DB_XREF=UI-R-CA1-bjf-e-05-0-UI.s1 /CLONE=UI-R-CA1-bjf-e-05-0-UI /FEA=EST /CNT=8 /TID=Rn.13322.2 /TIER=Stack /STK=6 /UG=Rn.13322 /UG_TITLE=ESTs BF406141 BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like Brf2 306542 NM_001024773 0006350 // transcription // inferred from electronic annotation /// 0006352 // transcription initiation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374892_at AI410221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410221 /DB_XREF=gi:4253725 /DB_XREF=EST238514 /CLONE=RKIDZ68 /FEA=EST /CNT=8 /TID=Rn.23795.1 /TIER=Stack /STK=6 /UG=Rn.23795 /UG_TITLE=ESTs, Weakly similar to DIAMINE ACETYLTRANSFERASE (M.musculus) AI410221 spermidine/spermine N1-acetyltransferase family member 2 Sat2 360547 NM_001108278 0008152 // metabolic process // inferred from electronic annotation 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1374893_at BG380384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380384 /DB_XREF=gi:13304856 /DB_XREF=UI-R-CT0-btw-e-09-0-UI.s1 /CLONE=UI-R-CT0-btw-e-09-0-UI /FEA=EST /CNT=8 /TID=Rn.13295.1 /TIER=Stack /STK=6 /UG=Rn.13295 /UG_TITLE=ESTs BG380384 1374894_at BE100017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100017 /DB_XREF=gi:8491902 /DB_XREF=UI-R-BJ1-atr-g-04-0-UI.s1 /CLONE=UI-R-BJ1-atr-g-04-0-UI /FEA=EST /CNT=8 /TID=Rn.33983.1 /TIER=Stack /STK=6 /UG=Rn.33983 /UG_TITLE=ESTs BE100017 zinc finger CCCH type containing 10 Zc3h10 685928 NM_001191090 /// XM_001065797 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374895_at BM384739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384739 /DB_XREF=gi:18184792 /DB_XREF=UI-R-CN1-cjl-j-17-0-UI.s2 /CLONE=UI-R-CN1-cjl-j-17-0-UI /FEA=EST /CNT=8 /TID=Rn.15504.1 /TIER=Stack /STK=6 /UG=Rn.15504 /UG_TITLE=ESTs, Highly similar to SKLM MOUSE SKELEMIN (M.musculus) BM384739 myomesin 1 Myom1 316740 NM_001191584 /// XM_001054913 /// XM_001054975 /// XM_001055036 /// XM_001065463 /// XM_002727260 /// XM_002730062 /// XM_002730063 /// XM_237523 0006936 // muscle contraction // inferred from electronic annotation /// 0006936 // muscle contraction // not recorded 0030017 // sarcomere // inferred from electronic annotation /// 0030017 // sarcomere // not recorded /// 0031430 // M band // inferred from electronic annotation /// 0031430 // M band // not recorded 0008307 // structural constituent of muscle // traceable author statement 1374896_at AI101385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101385 /DB_XREF=gi:3706293 /DB_XREF=EST210674 /CLONE=RBRBN68 /FEA=EST /CNT=8 /TID=Rn.22798.1 /TIER=Stack /STK=6 /UG=Rn.22798 /UG_TITLE=ESTs AI101385 1374897_at AI406842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406842 /DB_XREF=gi:4250346 /DB_XREF=EST235129 /CLONE=RBRDQ07 /FEA=EST /CNT=8 /TID=Rn.6994.1 /TIER=Stack /STK=6 /UG=Rn.6994 /UG_TITLE=ESTs, Weakly similar to splicing factor, arginineserine-rich (transformer 2 Drosophila homolog) 10 (Rattus norvegicus) (R.norvegicus) AI406842 THO complex 4 Thoc4 690585 NM_001109602 0006406 // mRNA export from nucleus // not recorded /// 0008380 // RNA splicing // not recorded /// 0046784 // intronless viral mRNA export from host nucleus // not recorded 0000346 // transcription export complex // not recorded /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // not recorded /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // not recorded 1374898_at AW527473 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527473 /DB_XREF=gi:7169887 /DB_XREF=UI-R-BO1-ajt-g-02-0-UI.s1 /CLONE=UI-R-BO1-ajt-g-02-0-UI /FEA=EST /CNT=8 /TID=Rn.47526.1 /TIER=Stack /STK=6 /UG=Rn.47526 /UG_TITLE=ESTs AW527473 similar to CG8841-PA RGD1311422 287822 XM_001081678 /// XM_213523 0005515 // protein binding // not recorded 1374899_at BM383043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383043 /DB_XREF=gi:18183096 /DB_XREF=UI-R-DS0-cje-m-07-0-UI.s1 /CLONE=UI-R-DS0-cje-m-07-0-UI /FEA=EST /CNT=8 /TID=Rn.8443.1 /TIER=Stack /STK=6 /UG=Rn.8443 /UG_TITLE=ESTs BM383043 family with sequence similarity 70, member B Fam70b 290877 NM_001106094 1374900_at BM388807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388807 /DB_XREF=gi:18188860 /DB_XREF=UI-R-DZ0-ckn-m-19-0-UI.s1 /CLONE=UI-R-DZ0-ckn-m-19-0-UI /FEA=EST /CNT=7 /TID=Rn.13518.1 /TIER=Stack /STK=6 /UG=Rn.13518 /UG_TITLE=ESTs BM388807 golgi SNAP receptor complex member 2 Gosr2 64154 NM_031685 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0000139 // Golgi membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1374901_at BI296416 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296416 /DB_XREF=gi:14960818 /DB_XREF=UI-R-CV2-cgq-h-08-0-UI.s1 /CLONE=UI-R-CV2-cgq-h-08-0-UI /FEA=EST /CNT=7 /TID=Rn.66988.1 /TIER=Stack /STK=6 /UG=Rn.66988 /UG_TITLE=ESTs, Weakly similar to YND5_YEAST Hypothetical 43.8 kDa Trp-Asp repeats containing protein in NCE3-HHT2 intergenic region (S.cerevisiae) BI296416 1374902_at AI071398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071398 /DB_XREF=gi:3397613 /DB_XREF=UI-R-C2-nb-a-10-0-UI.s1 /CLONE=UI-R-C2-nb-a-10-0-UI /FEA=EST /CNT=7 /TID=Rn.17539.1 /TIER=Stack /STK=6 /UG=Rn.17539 /UG_TITLE=ESTs AI071398 IQ motif containing GTPase activating protein 3 Iqgap3 310621 NM_001191709 /// XM_001068995 /// XM_227396 0007165 // signal transduction // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005099 // Ras GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1374903_at AI234819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234819 /DB_XREF=gi:3828325 /DB_XREF=EST231381 /CLONE=ROVCI16 /FEA=EST /CNT=7 /TID=Rn.8807.1 /TIER=Stack /STK=6 /UG=Rn.8807 /UG_TITLE=ESTs AI234819 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme Gcnt2 306860 NM_001001511 0008152 // metabolic process // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement 0008375 // acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0008375 // acetylglucosaminyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation 1374904_at AI175048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175048 /DB_XREF=gi:4134765 /DB_XREF=EST218566 /CLONE=RMUCB51 /FEA=EST /CNT=7 /TID=Rn.23396.1 /TIER=Stack /STK=6 /UG=Rn.23396 /UG_TITLE=ESTs AI175048 SIX homeobox 1 Six1 114634 NM_053759 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001759 // organ induction // inferred from electronic annotation /// 0001759 // organ induction // not recorded /// 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0030878 // thyroid gland development // inferred from electronic annotation /// 0030878 // thyroid gland development // not recorded /// 0034504 // protein localization in nucleus // inferred from electronic annotation /// 0034504 // protein localization in nucleus // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045664 // regulation of neuron differentiation // inferred from electronic annotation /// 0045664 // regulation of neuron differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048538 // thymus development // inferred from electronic annotation /// 0048538 // thymus development // not recorded /// 0048699 // generation of neurons // inferred from electronic annotation /// 0048699 // generation of neurons // not recorded /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048839 // inner ear development // not recorded /// 0048839 // inner ear development // inferred from electronic annotation /// 0048856 // anatomical structure development // not recorded /// 0048856 // anatomical structure development // inferred from electronic annotation /// 0051451 // myoblast migration // inferred from electronic annotation /// 0051451 // myoblast migration // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1374905_at AA925303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925303 /DB_XREF=gi:4236494 /DB_XREF=UI-R-A1-ek-e-09-0-UI.s1 /CLONE=UI-R-A1-ek-e-09-0-UI /FEA=EST /CNT=7 /TID=Rn.38536.1 /TIER=Stack /STK=6 /UG=Rn.38536 /UG_TITLE=ESTs AA925303 1374906_at BF407585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407585 /DB_XREF=gi:11395560 /DB_XREF=UI-R-BJ2-bqu-a-06-0-UI.s1 /CLONE=UI-R-BJ2-bqu-a-06-0-UI /FEA=EST /CNT=7 /TID=Rn.34457.1 /TIER=Stack /STK=6 /UG=Rn.34457 /UG_TITLE=ESTs, Highly similar to Z183_HUMAN ZINC FINGER PROTEIN 183 (H.sapiens) BF407585 ring finger protein 113A1 Rnf113a1 313450 NM_001014791 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374907_at BI274338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274338 /DB_XREF=gi:14885176 /DB_XREF=UI-R-CW0-bwh-g-04-0-UI.s1 /CLONE=UI-R-CW0-bwh-g-04-0-UI /FEA=EST /CNT=7 /TID=Rn.41004.1 /TIER=Stack /STK=6 /UG=Rn.41004 /UG_TITLE=ESTs BI274338 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1374908_at BE113272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113272 /DB_XREF=gi:8505377 /DB_XREF=UI-R-BJ1-awd-e-06-0-UI.s1 /CLONE=UI-R-BJ1-awd-e-06-0-UI /FEA=EST /CNT=7 /TID=Rn.47336.1 /TIER=Stack /STK=6 /UG=Rn.47336 /UG_TITLE=ESTs BE113272 1374909_at BI296626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296626 /DB_XREF=gi:14961236 /DB_XREF=UI-R-CV2-cgt-d-10-0-UI.s1 /CLONE=UI-R-CV2-cgt-d-10-0-UI /FEA=EST /CNT=7 /TID=Rn.46831.1 /TIER=Stack /STK=6 /UG=Rn.46831 /UG_TITLE=ESTs, Weakly similar to S68418 protein phosphatase 1M chain M110 isoform - rat (R.norvegicus) BI296626 Ankhd1-Eif4ebp3 fusion transcript Ankhd1-Eif4ebp3 679725 XM_001054207 /// XM_002725328 /// XM_002725329 0003723 // RNA binding // inferred from electronic annotation 1374910_at BE103601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103601 /DB_XREF=gi:8495701 /DB_XREF=UI-R-BX0-arg-b-11-0-UI.s1 /CLONE=UI-R-BX0-arg-b-11-0-UI /FEA=EST /CNT=7 /TID=Rn.2912.1 /TIER=Stack /STK=6 /UG=Rn.2912 /UG_TITLE=ESTs BE103601 cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila) Celsr2 83465 NM_001191110 /// XM_001070611 /// XM_001076220 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0021999 // neural plate anterior/posterior regionalization // inferred from electronic annotation /// 0021999 // neural plate anterior/posterior regionalization // not recorded /// 0022407 // regulation of cell-cell adhesion // inferred from mutant phenotype /// 0032583 // regulation of gene-specific transcription // inferred from electronic annotation /// 0032583 // regulation of gene-specific transcription // not recorded /// 0048813 // dendrite morphogenesis // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374911_at AW251534 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251534 /DB_XREF=gi:6595125 /DB_XREF=UI-R-BJ0-ado-c-06-0-UI.s1 /CLONE=UI-R-BJ0-ado-c-06-0-UI /FEA=EST /CNT=7 /TID=Rn.41273.1 /TIER=Stack /STK=6 /UG=Rn.41273 /UG_TITLE=ESTs AW251534 oxidative stress responsive gene RGD1303142 296346 NM_201560 1374912_at BI274467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274467 /DB_XREF=gi:14885406 /DB_XREF=UI-R-CW0-bwj-c-01-0-UI.s1 /CLONE=UI-R-CW0-bwj-c-01-0-UI /FEA=EST /CNT=7 /TID=Rn.21200.1 /TIER=Stack /STK=6 /UG=Rn.21200 /UG_TITLE=ESTs, Highly similar to T10755 kinesin-related protein 2 - rat (R.norvegicus) BI274467 kinesin family member 2C Kif2c 171529 NM_001085369 /// NM_134472 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007019 // microtubule depolymerization // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0030951 // establishment or maintenance of microtubule cytoskeleton polarity // not recorded /// 0051301 // cell division // inferred from electronic annotation /// 0051983 // regulation of chromosome segregation // not recorded 0000775 // chromosome, centromeric region // not recorded /// 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // not recorded /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // inferred from sequence or structural similarity /// 0015630 // microtubule cytoskeleton // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0051010 // microtubule plus-end binding // not recorded /// 0051010 // microtubule plus-end binding // inferred from sequence or structural similarity 1374913_at BI295047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295047 /DB_XREF=gi:14958100 /DB_XREF=UI-R-DK0-cef-b-10-0-UI.s1 /CLONE=UI-R-DK0-cef-b-10-0-UI /FEA=EST /CNT=7 /TID=Rn.43382.1 /TIER=Stack /STK=6 /UG=Rn.43382 /UG_TITLE=ESTs, Moderately similar to T50614 hypothetical protein DKFZp761E1415.1 (H.sapiens) BI295047 SET domain containing 3 Setd3 299295 XM_002726774 /// XM_002726775 /// XM_216781 1374914_at AI230294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230294 /DB_XREF=gi:3814181 /DB_XREF=EST226989 /CLONE=REMCU69 /FEA=EST /CNT=7 /TID=Rn.8864.1 /TIER=Stack /STK=6 /UG=Rn.8864 /UG_TITLE=ESTs AI230294 peroxisome proliferator-activated receptor delta Ppard 25682 NM_013141 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001890 // placenta development // not recorded /// 0001890 // placenta development // inferred from electronic annotation /// 0006029 // proteoglycan metabolic process // inferred from direct assay /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from direct assay /// 0006629 // lipid metabolic process // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // non-traceable author statement /// 0006635 // fatty acid beta-oxidation // not recorded /// 0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from sequence or structural similarity /// 0006776 // vitamin A metabolic process // inferred from mutant phenotype /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007507 // heart development // inferred from expression pattern /// 0007566 // embryo implantation // inferred from expression pattern /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008366 // axon ensheathment // not recorded /// 0008366 // axon ensheathment // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from direct assay /// 0009266 // response to temperature stimulus // non-traceable author statement /// 0009299 // mRNA transcription // inferred from direct assay /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014823 // response to activity // inferred from expression pattern /// 0014912 // negative regulation of smooth muscle cell migration // inferred from direct assay /// 0015908 // fatty acid transport // not recorded /// 0015908 // fatty acid transport // inferred from electronic annotation /// 0015908 // fatty acid transport // inferred from sequence or structural similarity /// 0019395 // fatty acid oxidation // inferred from direct assay /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0031589 // cell-substrate adhesion // not recorded /// 0031589 // cell-substrate adhesion // inferred from electronic annotation /// 0032024 // positive regulation of insulin secretion // inferred from direct assay /// 0032966 // negative regulation of collagen biosynthetic process // inferred from mutant phenotype /// 0033189 // response to vitamin A // inferred from expression pattern /// 0042060 // wound healing // not recorded /// 0042060 // wound healing // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042640 // anagen // not recorded /// 0042640 // anagen // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB cascade // non-traceable author statement /// 0043616 // keratinocyte proliferation // not recorded /// 0043616 // keratinocyte proliferation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045598 // regulation of fat cell differentiation // not recorded /// 0045598 // regulation of fat cell differentiation // inferred from electronic annotation /// 0045684 // positive regulation of epidermis development // inferred from direct assay /// 0045909 // positive regulation of vasodilation // inferred from direct assay /// 0046697 // decidualization // inferred from expression pattern /// 0048265 // response to pain // non-traceable author statement /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from direct assay /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // inferred from direct assay /// 0051546 // keratinocyte migration // not recorded /// 0051546 // keratinocyte migration // inferred from electronic annotation /// 0060612 // adipose tissue development // not recorded /// 0060612 // adipose tissue development // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // not recorded /// 0004879 // ligand-dependent nuclear receptor activity // traceable author statement /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005504 // fatty acid binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008144 // drug binding // not recorded /// 0008144 // drug binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008289 // lipid binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051059 // NF-kappaB binding // inferred from physical interaction /// 0070539 // linoleic acid binding // not recorded /// 0070539 // linoleic acid binding // inferred from electronic annotation 1374915_at BE113321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113321 /DB_XREF=gi:8505391 /DB_XREF=UI-R-BJ1-awd-f-08-0-UI.s1 /CLONE=UI-R-BJ1-awd-f-08-0-UI /FEA=EST /CNT=7 /TID=Rn.45356.1 /TIER=Stack /STK=6 /UG=Rn.45356 /UG_TITLE=ESTs, Highly similar to GGA1_HUMAN ADP-RIBOSYLATION FACTOR BINDING PROTEIN GGA1 (GOLGI-LOCALIZED, GAMMA EAR-CONTAINING, ARF-BINDING PROTEIN 1) (GAMMA-ADAPTIN RELATED PROTEIN 1) (H.sapiens) BE113321 1374916_at BF401373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401373 /DB_XREF=gi:11389348 /DB_XREF=UI-R-CA0-bgs-h-07-0-UI.s1 /CLONE=UI-R-CA0-bgs-h-07-0-UI /FEA=EST /CNT=7 /TID=Rn.39242.1 /TIER=Stack /STK=6 /UG=Rn.39242 /UG_TITLE=ESTs BF401373 1374917_at AI548571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548571 /DB_XREF=gi:4466059 /DB_XREF=UI-R-C3-td-a-11-0-UI.s1 /CLONE=UI-R-C3-td-a-11-0-UI /FEA=EST /CNT=7 /TID=Rn.19993.1 /TIER=Stack /STK=6 /UG=Rn.19993 /UG_TITLE=ESTs, Highly similar to T46504 hypothetical protein DKFZp434M179.1 (H.sapiens) AI548571 SEC63 homolog (S. cerevisiae) Sec63 309858 NM_001107637 0006457 // protein folding // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1374918_at BM392219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392219 /DB_XREF=gi:18192272 /DB_XREF=UI-R-DO1-ckp-d-03-0-UI.s1 /CLONE=UI-R-DO1-ckp-d-03-0-UI /FEA=EST /CNT=7 /TID=Rn.47627.1 /TIER=Stack /STK=6 /UG=Rn.47627 /UG_TITLE=ESTs BM392219 1374919_at BE103543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103543 /DB_XREF=gi:8495643 /DB_XREF=UI-R-BX0-ard-d-12-0-UI.s1 /CLONE=UI-R-BX0-ard-d-12-0-UI /FEA=EST /CNT=7 /TID=Rn.6208.1 /TIER=Stack /STK=6 /UG=Rn.6208 /UG_TITLE=ESTs BE103543 replication factor C (activator 1) 1 Rfc1 89809 NM_053547 0006260 // DNA replication // inferred from electronic annotation /// 0006297 // nucleotide-excision repair, DNA gap filling // not recorded /// 0016481 // negative regulation of transcription // inferred from mutant phenotype /// 0045941 // positive regulation of transcription // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005663 // DNA replication factor C complex // inferred from electronic annotation /// 0005663 // DNA replication factor C complex // not recorded /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003689 // DNA clamp loader activity // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // inferred from direct assay /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay 1374920_at AI228955 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228955 /DB_XREF=gi:3812842 /DB_XREF=EST225650 /CLONE=RBRDC20 /FEA=EST /CNT=7 /TID=Rn.19095.1 /TIER=Stack /STK=6 /UG=Rn.19095 /UG_TITLE=ESTs AI228955 1374921_at BI274548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274548 /DB_XREF=gi:14885553 /DB_XREF=UI-R-CW0-bwl-b-06-0-UI.s1 /CLONE=UI-R-CW0-bwl-b-06-0-UI /FEA=EST /CNT=7 /TID=Rn.18882.1 /TIER=Stack /STK=6 /UG=Rn.18882 /UG_TITLE=ESTs, Weakly similar to T45294 hypothetical protein KIAA1088 (H.sapiens) BI274548 regulator of telomere elongation helicase 1 Rtel1 362288 NM_001191857 /// XM_001057789 /// XM_342602 0000723 // telomere maintenance // not recorded /// 0000723 // telomere maintenance // inferred from sequence or structural similarity /// 0000723 // telomere maintenance // inferred from electronic annotation /// 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010569 // regulation of double-strand break repair via homologous recombination // not recorded /// 0010569 // regulation of double-strand break repair via homologous recombination // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // not recorded /// 0004003 // ATP-dependent DNA helicase activity // inferred from sequence or structural similarity /// 0004003 // ATP-dependent DNA helicase activity // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation 1374922_at AI013096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013096 /DB_XREF=gi:3227152 /DB_XREF=EST207771 /CLONE=RSPBG52 /FEA=EST /CNT=7 /TID=Rn.32671.1 /TIER=Stack /STK=6 /UG=Rn.32671 /UG_TITLE=ESTs, Weakly similar to Y75B8A.14.p (Caenorhabditis elegans) (C.elegans) AI013096 GPN-loop GTPase 2 Gpn2 362614 XM_001066907 /// XM_342932 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1374923_at BM386444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386444 /DB_XREF=gi:18186497 /DB_XREF=UI-R-CN1-cjg-a-15-0-UI.s1 /CLONE=UI-R-CN1-cjg-a-15-0-UI /FEA=EST /CNT=7 /TID=Rn.19274.1 /TIER=Stack /STK=6 /UG=Rn.19274 /UG_TITLE=ESTs BM386444 ischemia related factor NYW-1 Nyw1 59319 NM_001134341 0006914 // autophagy // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0021915 // neural tube development // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1374924_at BE098025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098025 /DB_XREF=gi:8488919 /DB_XREF=UI-R-C4-amc-e-03-0-UI.s1 /CLONE=UI-R-C4-amc-e-03-0-UI /FEA=EST /CNT=7 /TID=Rn.24447.1 /TIER=Stack /STK=6 /UG=Rn.24447 /UG_TITLE=ESTs BE098025 1374925_at AI102530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102530 /DB_XREF=gi:3704679 /DB_XREF=EST211819 /CLONE=REMBO84 /FEA=EST /CNT=7 /TID=Rn.6880.1 /TIER=Stack /STK=6 /UG=Rn.6880 /UG_TITLE=ESTs AI102530 Ngfi-A binding protein 2 Nab2 314910 NM_001134874 0001958 // endochondral ossification // not recorded /// 0014037 // Schwann cell differentiation // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0042552 // myelination // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045682 // regulation of epidermis development // not recorded 0005634 // nucleus // inferred from electronic annotation 0016564 // transcription repressor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded 1374926_at AI102985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102985 /DB_XREF=gi:3707610 /DB_XREF=EST212274 /CLONE=REMBV77 /FEA=EST /CNT=7 /TID=Rn.22317.1 /TIER=Stack /STK=6 /UG=Rn.22317 /UG_TITLE=ESTs, Highly similar to DMWD MOUSE DYSTROPHIA MYOTONICA-CONTAINING WD REPEAT MOTIF PROTEIN (M.musculus) AI102985 dystrophia myotonica, WD repeat containing Dmwd 680252 XM_001056337 /// XM_002725588 1374927_at AI714124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI714124 /DB_XREF=gi:5017924 /DB_XREF=UI-R-AF1-aaq-g-09-0-UI.s1 /CLONE=UI-R-AF1-aaq-g-09-0-UI /FEA=EST /CNT=7 /TID=Rn.14945.1 /TIER=Stack /STK=6 /UG=Rn.14945 /UG_TITLE=ESTs AI714124 1374928_at BF406240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406240 /DB_XREF=gi:11394215 /DB_XREF=UI-R-CA1-bjf-i-22-0-UI.s1 /CLONE=UI-R-CA1-bjf-i-22-0-UI /FEA=EST /CNT=6 /TID=Rn.63616.1 /TIER=Stack /STK=6 /UG=Rn.63616 /UG_TITLE=ESTs, Moderately similar to T00331 hypothetical protein KIAA0555 (H.sapiens) BF406240 1374929_at AI010233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010233 /DB_XREF=gi:4133200 /DB_XREF=EST204684 /CLONE=RLUBV53 /FEA=EST /CNT=6 /TID=Rn.22388.1 /TIER=Stack /STK=6 /UG=Rn.22388 /UG_TITLE=ESTs AI010233 coiled-coil domain containing 126 Ccdc126 500117 NM_001109232 1374930_at BG378606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378606 /DB_XREF=gi:13303078 /DB_XREF=UI-R-CV1-bvr-e-02-0-UI.s1 /CLONE=UI-R-CV1-bvr-e-02-0-UI /FEA=EST /CNT=6 /TID=Rn.66580.1 /TIER=Stack /STK=6 /UG=Rn.66580 /UG_TITLE=ESTs BG378606 1374931_at AA943496 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943496 /DB_XREF=gi:3103412 /DB_XREF=EST198995 /CLONE=RBRAK60 /FEA=EST /CNT=6 /TID=Rn.7580.1 /TIER=Stack /STK=6 /UG=Rn.7580 /UG_TITLE=ESTs AA943496 mitochondrial ribosomal protein L40 Mrpl40 287962 NM_001024865 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005761 // mitochondrial ribosome // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 1374932_at BI282731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282731 /DB_XREF=gi:14933790 /DB_XREF=UI-R-CW0s-cce-e-07-0-UI.s1 /CLONE=UI-R-CW0s-cce-e-07-0-UI /FEA=EST /CNT=6 /TID=Rn.66850.1 /TIER=Stack /STK=6 /UG=Rn.66850 /UG_TITLE=ESTs BI282731 rCG31799-like LOC100361444 100361444 XM_002726997 /// XM_002729877 1374933_at BI277043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277043 /DB_XREF=gi:14922539 /DB_XREF=UI-R-CY0-bxp-g-08-0-UI.s1 /CLONE=UI-R-CY0-bxp-g-08-0-UI /FEA=EST /CNT=6 /TID=Rn.2694.1 /TIER=Stack /STK=6 /UG=Rn.2694 /UG_TITLE=ESTs BI277043 melanoma cell adhesion molecule Mcam 78967 NM_001034009 /// NM_023983 0007155 // cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043204 // perikaryon // inferred from electronic annotation 1374934_at BF405151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405151 /DB_XREF=gi:11393126 /DB_XREF=UI-R-CA1-biq-d-03-0-UI.s1 /CLONE=UI-R-CA1-biq-d-03-0-UI /FEA=EST /CNT=6 /TID=Rn.62890.1 /TIER=Stack /STK=6 /UG=Rn.62890 /UG_TITLE=ESTs BF405151 1374935_at AI412099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412099 /DB_XREF=gi:4255603 /DB_XREF=EST240393 /CLONE=RKIEJ80 /FEA=EST /CNT=6 /TID=Rn.17648.1 /TIER=Stack /STK=6 /UG=Rn.17648 /UG_TITLE=ESTs AI412099 1374936_at BI274660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274660 /DB_XREF=gi:14885777 /DB_XREF=UI-R-CX0-bws-e-05-0-UI.s1 /CLONE=UI-R-CX0-bws-e-05-0-UI /FEA=EST /CNT=6 /TID=Rn.46901.1 /TIER=Stack /STK=6 /UG=Rn.46901 /UG_TITLE=ESTs, Weakly similar to NAGA_CAEEL PUTATIVE N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE (GLCNAC 6-P DEACETYLASE) (C.elegans) BI274660 amidohydrolase domain containing 2 Amdhd2 302972 NM_001024990 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006044 // N-acetylglucosamine metabolic process // inferred from electronic annotation 0008448 // N-acetylglucosamine-6-phosphate deacetylase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation 1374937_at BI294726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294726 /DB_XREF=gi:14957462 /DB_XREF=UI-R-DK0-ceb-d-03-0-UI.s1 /CLONE=UI-R-DK0-ceb-d-03-0-UI /FEA=EST /CNT=6 /TID=Rn.19875.1 /TIER=Stack /STK=6 /UG=Rn.19875 /UG_TITLE=ESTs BI294726 similar to RIKEN cDNA 4931414P19 RGD1565222 498514 NM_001109101 1374938_at BI295067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295067 /DB_XREF=gi:14958140 /DB_XREF=UI-R-DK0-cef-d-10-0-UI.s1 /CLONE=UI-R-DK0-cef-d-10-0-UI /FEA=EST /CNT=6 /TID=Rn.25242.1 /TIER=Stack /STK=6 /UG=Rn.25242 /UG_TITLE=ESTs, Highly similar to ZW10_MOUSE CENTROMEREKINETOCHORE PROTEIN ZW10 HOMOLOG (M.musculus) BI295067 ZW10, kinetochore associated, homolog (Drosophila) Zw10 363059 NM_001024801 0000070 // mitotic sister chromatid segregation // not recorded /// 0000070 // mitotic sister chromatid segregation // inferred from sequence or structural similarity /// 0000070 // mitotic sister chromatid segregation // inferred from electronic annotation /// 0000132 // establishment of mitotic spindle orientation // inferred from electronic annotation /// 0000132 // establishment of mitotic spindle orientation // not recorded /// 0006461 // protein complex assembly // not recorded /// 0006461 // protein complex assembly // inferred from sequence or structural similarity /// 0006461 // protein complex assembly // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // not recorded /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from sequence or structural similarity /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007080 // mitotic metaphase plate congression // inferred from electronic annotation /// 0007080 // mitotic metaphase plate congression // not recorded /// 0007093 // mitotic cell cycle checkpoint // not recorded /// 0007093 // mitotic cell cycle checkpoint // inferred from sequence or structural similarity /// 0007093 // mitotic cell cycle checkpoint // inferred from electronic annotation /// 0007096 // regulation of exit from mitosis // not recorded /// 0007096 // regulation of exit from mitosis // inferred from sequence or structural similarity /// 0007096 // regulation of exit from mitosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0034501 // protein localization to kinetochore // inferred from electronic annotation /// 0034501 // protein localization to kinetochore // not recorded /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // not recorded /// 0000776 // kinetochore // inferred from sequence or structural similarity /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0000922 // spindle pole // not recorded /// 0000922 // spindle pole // inferred from sequence or structural similarity /// 0000922 // spindle pole // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005828 // kinetochore microtubule // not recorded /// 0005828 // kinetochore microtubule // inferred from sequence or structural similarity /// 0005828 // kinetochore microtubule // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374939_at BE112927 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112927 /DB_XREF=gi:8505032 /DB_XREF=UI-R-BJ1-awa-e-01-0-UI.s1 /CLONE=UI-R-BJ1-awa-e-01-0-UI /FEA=EST /CNT=6 /TID=Rn.21426.1 /TIER=Stack /STK=6 /UG=Rn.21426 /UG_TITLE=ESTs BE112927 cytoplasmic FMR1 interacting protein 2 Cyfip2 303073 NM_001106996 1374940_at BM388945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388945 /DB_XREF=gi:18188998 /DB_XREF=UI-R-DZ0-ckn-n-15-0-UI.s1 /CLONE=UI-R-DZ0-ckn-n-15-0-UI /FEA=EST /CNT=6 /TID=Rn.11950.1 /TIER=Stack /STK=6 /UG=Rn.11950 /UG_TITLE=ESTs BM388945 ubiquitin specific peptidase 36 Usp36 303700 NM_001107069 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0005730 // nucleolus // not recorded 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1374941_at BF397951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397951 /DB_XREF=gi:11382936 /DB_XREF=UI-R-BS2-bef-e-09-0-UI.s1 /CLONE=UI-R-BS2-bef-e-09-0-UI /FEA=EST /CNT=6 /TID=Rn.6792.1 /TIER=Stack /STK=6 /UG=Rn.6792 /UG_TITLE=ESTs BF397951 1374942_at BI285086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285086 /DB_XREF=gi:14938380 /DB_XREF=UI-R-DB0-byw-a-06-0-UI.s1 /CLONE=UI-R-DB0-byw-a-06-0-UI /FEA=EST /CNT=6 /TID=Rn.41512.1 /TIER=Stack /STK=6 /UG=Rn.41512 /UG_TITLE=ESTs, Weakly similar to carboxypeptidase E (Rattus norvegicus) (R.norvegicus) BI285086 carboxypeptidase X (M14 family), member 2 Cpxm2 293566 NM_001106306 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0004180 // carboxypeptidase activity // not recorded /// 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1374943_at AI170809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170809 /DB_XREF=gi:3710849 /DB_XREF=EST216748 /CLONE=RMUBB75 /FEA=EST /CNT=6 /TID=Rn.1135.1 /TIER=Stack /STK=6 /UG=Rn.1135 /UG_TITLE=ESTs AI170809 similar to RIKEN cDNA 2010011I20 RGD1311378 296408 NM_001106547 1374944_at BI275829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275829 /DB_XREF=gi:14920138 /DB_XREF=UI-R-CX0-bxh-a-11-0-UI.s1 /CLONE=UI-R-CX0-bxh-a-11-0-UI /FEA=EST /CNT=6 /TID=Rn.45006.1 /TIER=Stack /STK=6 /UG=Rn.45006 /UG_TITLE=ESTs BI275829 zinc finger protein 691 Znf691 313548 NM_001107968 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1374945_at BI281827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281827 /DB_XREF=gi:14931967 /DB_XREF=UI-R-CU0s-cbt-a-06-0-UI.s1 /CLONE=UI-R-CU0s-cbt-a-06-0-UI /FEA=EST /CNT=6 /TID=Rn.54722.1 /TIER=Stack /STK=6 /UG=Rn.54722 /UG_TITLE=ESTs BI281827 tRNA methyltransferase 61 homolog A (S. cerevisiae) Trmt61a 314462 NM_001007706 0008033 // tRNA processing // inferred from electronic annotation /// 0030488 // tRNA methylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016429 // tRNA (adenine-N1-)-methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1374946_at BI296261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296261 /DB_XREF=gi:14960525 /DB_XREF=UI-R-DK0-cey-c-03-0-UI.s1 /CLONE=UI-R-DK0-cey-c-03-0-UI /FEA=EST /CNT=6 /TID=Rn.8952.1 /TIER=Stack /STK=6 /UG=Rn.8952 /UG_TITLE=ESTs BI296261 1374947_at BI286041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286041 /DB_XREF=gi:14940295 /DB_XREF=UI-R-CX0s-ccu-g-09-0-UI.s1 /CLONE=UI-R-CX0s-ccu-g-09-0-UI /FEA=EST /CNT=6 /TID=Rn.7383.1 /TIER=Stack /STK=6 /UG=Rn.7383 /UG_TITLE=ESTs BI286041 breast cancer anti-estrogen resistance 3 Bcar3 310838 NM_001107722 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374948_at BI275815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275815 /DB_XREF=gi:14920108 /DB_XREF=UI-R-CX0-bxg-h-08-0-UI.s1 /CLONE=UI-R-CX0-bxg-h-08-0-UI /FEA=EST /CNT=6 /TID=Rn.16484.1 /TIER=Stack /STK=6 /UG=Rn.16484 /UG_TITLE=ESTs BI275815 transmembrane protein 106A Tmem106a 287722 NM_001024967 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1374949_at BM385443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385443 /DB_XREF=gi:18185496 /DB_XREF=UI-R-CN1-clv-l-04-0-UI.s1 /CLONE=UI-R-CN1-clv-l-04-0-UI /FEA=EST /CNT=6 /TID=Rn.37288.1 /TIER=Stack /STK=6 /UG=Rn.37288 /UG_TITLE=ESTs BM385443 zinc finger, FYVE domain containing 19 Zfyve19 499871 NM_001034948 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1374950_at BF400611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400611 /DB_XREF=gi:11388586 /DB_XREF=UI-R-CA0-bhd-d-10-0-UI.s1 /CLONE=UI-R-CA0-bhd-d-10-0-UI /FEA=EST /CNT=6 /TID=Rn.62707.1 /TIER=Stack /STK=6 /UG=Rn.62707 /UG_TITLE=ESTs BF400611 1374951_at BF404478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404478 /DB_XREF=gi:11392453 /DB_XREF=UI-R-CA1-bif-g-10-0-UI.s1 /CLONE=UI-R-CA1-bif-g-10-0-UI /FEA=EST /CNT=6 /TID=Rn.16916.1 /TIER=Stack /STK=6 /UG=Rn.16916 /UG_TITLE=ESTs BF404478 obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF Obscn 338458 XM_001076876 /// XM_340807 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0030017 // sarcomere // inferred from direct assay /// 0030018 // Z disc // inferred from direct assay /// 0031430 // M band // inferred from direct assay 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // non-traceable author statement /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008307 // structural constituent of muscle // inferred from expression pattern /// 0031432 // titin binding // not recorded 1374952_at BI275854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275854 /DB_XREF=gi:14920191 /DB_XREF=UI-R-CX0-bxh-d-01-0-UI.s1 /CLONE=UI-R-CX0-bxh-d-01-0-UI /FEA=EST /CNT=6 /TID=Rn.46941.1 /TIER=Stack /STK=6 /UG=Rn.46941 /UG_TITLE=ESTs BI275854 G protein-coupled receptor 137 Gpr137 689984 NM_001109562 0004872 // receptor activity // inferred from electronic annotation 1374953_at AI599484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599484 /DB_XREF=gi:4608532 /DB_XREF=EST251187 /CLONE=REMDX70 /FEA=EST /CNT=6 /TID=Rn.9543.1 /TIER=Stack /STK=6 /UG=Rn.9543 /UG_TITLE=ESTs AI599484 similar to CG12279-PA LOC500420 500420 XM_001058924 /// XM_575783 0005737 // cytoplasm // inferred from electronic annotation 1374954_at AI101322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101322 /DB_XREF=gi:3706240 /DB_XREF=EST210611 /CLONE=RBRBL41 /FEA=EST /CNT=6 /TID=Rn.28065.1 /TIER=Stack /STK=6 /UG=Rn.28065 /UG_TITLE=ESTs AI101322 histone deacetylase 11 Hdac11 297453 NM_001106610 0014003 // oligodendrocyte development // inferred from mutant phenotype /// 0016575 // histone deacetylation // inferred from electronic annotation /// 0016575 // histone deacetylation // not recorded 0000118 // histone deacetylase complex // inferred from electronic annotation /// 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0004407 // histone deacetylase activity // inferred from electronic annotation /// 0004407 // histone deacetylase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1374955_at BF418034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418034 /DB_XREF=gi:11405988 /DB_XREF=UI-R-CA1-blv-c-05-0-UI.s1 /CLONE=UI-R-CA1-blv-c-05-0-UI /FEA=EST /CNT=6 /TID=Rn.63318.1 /TIER=Stack /STK=6 /UG=Rn.63318 /UG_TITLE=ESTs BF418034 1374956_at BE101520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101520 /DB_XREF=gi:8493436 /DB_XREF=UI-R-BJ1-auj-h-07-0-UI.s1 /CLONE=UI-R-BJ1-auj-h-07-0-UI /FEA=EST /CNT=6 /TID=Rn.19376.2 /TIER=Stack /STK=6 /UG=Rn.19376 /LL=81740 /UG_GENE=Pcm1 /UG_TITLE=pericentriolar material 1 BE101520 pericentriolar material 1 Pcm1 81740 NM_031076 0022027 // interkinetic nuclear migration // inferred from electronic annotation /// 0022027 // interkinetic nuclear migration // not recorded /// 0034453 // microtubule anchoring // inferred from electronic annotation /// 0034453 // microtubule anchoring // not recorded /// 0042384 // cilium assembly // inferred from electronic annotation /// 0042384 // cilium assembly // not recorded /// 0050768 // negative regulation of neurogenesis // inferred from electronic annotation /// 0050768 // negative regulation of neurogenesis // not recorded /// 0051297 // centrosome organization // inferred from electronic annotation /// 0051297 // centrosome organization // not recorded /// 0071539 // protein localization to centrosome // inferred from electronic annotation /// 0071539 // protein localization to centrosome // not recorded 0000242 // pericentriolar material // inferred from electronic annotation /// 0000242 // pericentriolar material // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0031513 // nonmotile primary cilium // not recorded /// 0034451 // centriolar satellite // inferred from electronic annotation /// 0034451 // centriolar satellite // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374957_at AI408197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408197 /DB_XREF=gi:4251701 /DB_XREF=EST236487 /CLONE=ROVEI92 /FEA=EST /CNT=6 /TID=Rn.20437.1 /TIER=Stack /STK=6 /UG=Rn.20437 /UG_TITLE=ESTs AI408197 1374958_at AA819640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819640 /DB_XREF=gi:4227977 /DB_XREF=UI-R-A0-an-f-06-0-UI.s1 /CLONE=UI-R-A0-an-f-06-0-UI /FEA=EST /CNT=6 /TID=Rn.21876.1 /TIER=Stack /STK=6 /UG=Rn.21876 /UG_TITLE=ESTs AA819640 ADP-dependent glucokinase Adpgk 315722 NM_001100723 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1374959_at AA945624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945624 /DB_XREF=gi:3105540 /DB_XREF=EST201123 /CLONE=RLIAP94 /FEA=EST /CNT=6 /TID=Rn.7882.1 /TIER=Stack /STK=6 /UG=Rn.7882 /UG_TITLE=ESTs, Weakly similar to NAD(P)H DEHYDROGENASE (R.norvegicus) AA945624 NAD(P)H dehydrogenase, quinone 2 Nqo2 291084 NM_001004214 0007613 // memory // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0001512 // dihydronicotinamide riboside quinone reductase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation 1374960_at BM390080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390080 /DB_XREF=gi:18190128 /DB_XREF=UI-R-CN1-cjo-l-07-0-UI.s1 /CLONE=UI-R-CN1-cjo-l-07-0-UI /FEA=EST /CNT=6 /TID=Rn.8704.1 /TIER=Stack /STK=6 /UG=Rn.8704 /UG_TITLE=ESTs BM390080 similar to 9130011E15Rik protein RGD1564887 499363 XM_001058595 /// XM_574677 1374961_at BI274511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274511 /DB_XREF=gi:14885484 /DB_XREF=UI-R-CW0-bwj-f-12-0-UI.s1 /CLONE=UI-R-CW0-bwj-f-12-0-UI /FEA=EST /CNT=6 /TID=Rn.15011.1 /TIER=Stack /STK=6 /UG=Rn.15011 /UG_TITLE=ESTs BI274511 polyamine-modulated factor 1 Pmf1 681050 NM_001191568 /// XM_001060090 /// XM_002725991 /// XM_002725992 /// XM_002729061 0007059 // chromosome segregation // not recorded 0000444 // MIS12/MIND type complex // not recorded 0003713 // transcription coactivator activity // not recorded /// 0005515 // protein binding // not recorded /// 0043522 // leucine zipper domain binding // not recorded 1374962_at BM385683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385683 /DB_XREF=gi:18185736 /DB_XREF=UI-R-CN1-clx-k-23-0-UI.s1 /CLONE=UI-R-CN1-clx-k-23-0-UI /FEA=EST /CNT=6 /TID=Rn.32770.1 /TIER=Stack /STK=6 /UG=Rn.32770 /UG_TITLE=ESTs BM385683 reticulon 4 interacting protein 1 Rtn4ip1 309912 NM_001107644 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1374963_s_at BI290604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290604 /DB_XREF=gi:14949327 /DB_XREF=UI-R-DK0-cfx-b-11-0-UI.s1 /CLONE=UI-R-DK0-cfx-b-11-0-UI /FEA=EST /CNT=6 /TID=Rn.15248.1 /TIER=Stack /STK=6 /UG=Rn.15248 /UG_TITLE=ESTs BI290604 1374964_at AI175505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175505 /DB_XREF=gi:3726143 /DB_XREF=EST219057 /CLONE=RMUCO32 /FEA=EST /CNT=6 /TID=Rn.17532.1 /TIER=Stack /STK=6 /UG=Rn.17532 /UG_TITLE=ESTs AI175505 dipeptidylpeptidase 8 Dpp8 315758 NM_001108159 0006508 // proteolysis // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0016020 // membrane // inferred from electronic annotation 0008236 // serine-type peptidase activity // inferred from electronic annotation 1374965_at BF414261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414261 /DB_XREF=gi:11402250 /DB_XREF=UI-R-BJ2-boo-c-10-0-UI.s1 /CLONE=UI-R-BJ2-boo-c-10-0-UI /FEA=EST /CNT=6 /TID=Rn.50230.1 /TIER=Stack /STK=6 /UG=Rn.50230 /UG_TITLE=ESTs, Weakly similar to RR22_HUMAN RAS-LIKE PROTEIN RRP22 (H.sapiens) BF414261 1374966_at BE109057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109057 /DB_XREF=gi:8501162 /DB_XREF=UI-R-BS1-azc-e-01-0-UI.s1 /CLONE=UI-R-BS1-azc-e-01-0-UI /FEA=EST /CNT=6 /TID=Rn.41336.1 /TIER=Stack /STK=6 /UG=Rn.41336 /UG_TITLE=ESTs BE109057 doublecortin Dcx 84394 NM_053379 0001764 // neuron migration // inferred from mutant phenotype /// 0001764 // neuron migration // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0021952 // central nervous system projection neuron axonogenesis // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0048675 // axon extension // not recorded /// 0048813 // dendrite morphogenesis // not recorded /// 0051602 // response to electrical stimulus // inferred from expression pattern 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay 0005515 // protein binding // not recorded 1374967_at BI282726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282726 /DB_XREF=gi:14933780 /DB_XREF=UI-R-CW0s-cce-e-01-0-UI.s1 /CLONE=UI-R-CW0s-cce-e-01-0-UI /FEA=EST /CNT=6 /TID=Rn.29309.1 /TIER=Stack /STK=6 /UG=Rn.29309 /UG_TITLE=ESTs BI282726 1374968_at AI599930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599930 /DB_XREF=gi:4608978 /DB_XREF=EST251633 /CLONE=REMEM04 /FEA=EST /CNT=6 /TID=Rn.20026.1 /TIER=Stack /STK=6 /UG=Rn.20026 /UG_TITLE=ESTs AI599930 Eukaryotic translation initiation factor 2C, 1 Eif2c1 313594 NM_001191765 /// XM_001058138 /// XM_233544 0000956 // nuclear-transcribed mRNA catabolic process // not recorded /// 0035278 // negative regulation of translation involved in gene silencing by miRNA // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374969_at AA799832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799832 /DB_XREF=gi:2862787 /DB_XREF=EST189329 /CLONE=RHEAF90 /FEA=EST /CNT=6 /TID=Rn.6242.1 /TIER=Stack /STK=6 /UG=Rn.6242 /UG_TITLE=ESTs AA799832 Phosphoglucomutase 5 Pgm5 679990 NM_001191953 /// XM_002725716 /// XM_574644 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0001725 // stress fiber // not recorded /// 0005913 // cell-cell adherens junction // not recorded /// 0005914 // spot adherens junction // not recorded /// 0005925 // focal adhesion // not recorded /// 0009898 // internal side of plasma membrane // not recorded /// 0014704 // intercalated disc // not recorded /// 0016010 // dystrophin-associated glycoprotein complex // not recorded /// 0030018 // Z disc // not recorded /// 0030055 // cell-substrate junction // not recorded /// 0042383 // sarcolemma // not recorded /// 0043034 // costamere // not recorded 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004614 // phosphoglucomutase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016868 // intramolecular transferase activity, phosphotransferases // inferred from electronic annotation /// 0016868 // intramolecular transferase activity, phosphotransferases // not recorded 1374970_at BF392911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392911 /DB_XREF=gi:11377770 /DB_XREF=UI-R-CA0-bfq-f-09-0-UI.s1 /CLONE=UI-R-CA0-bfq-f-09-0-UI /FEA=EST /CNT=6 /TID=Rn.58724.1 /TIER=Stack /STK=6 /UG=Rn.58724 /UG_TITLE=ESTs BF392911 wingless-type MMTV integration site family, member 5B Wnt5b 282582 NM_001100489 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // not recorded /// 0007223 // Wnt receptor signaling pathway, calcium modulating pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0042060 // wound healing // inferred from expression pattern /// 0045600 // positive regulation of fat cell differentiation // inferred from electronic annotation /// 0045600 // positive regulation of fat cell differentiation // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0031012 // extracellular matrix // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded 1374971_at AA818954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818954 /DB_XREF=gi:4227622 /DB_XREF=UI-R-A0-as-e-08-0-UI.s1 /CLONE=UI-R-A0-as-e-08-0-UI /FEA=EST /CNT=6 /TID=Rn.16576.1 /TIER=Stack /STK=6 /UG=Rn.16576 /UG_TITLE=ESTs AA818954 1374972_at BI288775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288775 /DB_XREF=gi:14945678 /DB_XREF=UI-R-DK0-cde-g-07-0-UI.s1 /CLONE=UI-R-DK0-cde-g-07-0-UI /FEA=EST /CNT=6 /TID=Rn.38220.1 /TIER=Stack /STK=6 /UG=Rn.38220 /UG_TITLE=ESTs BI288775 TBC1 domain family, member 2 Tbc1d2 313234 NM_001107933 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1374973_at AA892531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892531 /DB_XREF=gi:3019410 /DB_XREF=EST196334 /CLONE=RKIAS55 /FEA=EST /CNT=6 /TID=Rn.23798.1 /TIER=Stack /STK=6 /UG=Rn.23798 /UG_TITLE=ESTs, Weakly similar to B39066 proline-rich protein 15 - rat (R.norvegicus) AA892531 mediator complex subunit 25 Med25 292889 NM_001170426 1374974_at BI299365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299365 /DB_XREF=gi:14975650 /DB_XREF=UI-R-CV2-chu-d-03-0-UI.s1 /CLONE=UI-R-CV2-chu-d-03-0-UI /FEA=EST /CNT=6 /TID=Rn.66238.1 /TIER=Stack /STK=6 /UG=Rn.66238 /UG_TITLE=ESTs BI299365 1374975_at BF402601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402601 /DB_XREF=gi:11390576 /DB_XREF=UI-R-CA0-bhm-d-06-0-UI.s1 /CLONE=UI-R-CA0-bhm-d-06-0-UI /FEA=EST /CNT=6 /TID=Rn.60896.1 /TIER=Stack /STK=6 /UG=Rn.60896 /UG_TITLE=ESTs BF402601 1374976_a_at AI548897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548897 /DB_XREF=gi:4466385 /DB_XREF=UI-R-C3-tp-b-11-0-UI.s1 /CLONE=UI-R-C3-tp-b-11-0-UI /FEA=EST /CNT=6 /TID=Rn.59.2 /TIER=Stack /STK=6 /UG=Rn.59 /LL=81782 /UG_GENE=Soat1 /UG_TITLE=acyl-coenzyme A:cholesterol acyltransferase AI548897 Sterol O-acyltransferase 1 Soat1 81782 NM_031118 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0008203 // cholesterol metabolic process // traceable author statement /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0010742 // macrophage derived foam cell differentiation // not recorded /// 0010878 // cholesterol storage // inferred from electronic annotation /// 0010878 // cholesterol storage // not recorded /// 0033344 // cholesterol efflux // inferred from electronic annotation /// 0033344 // cholesterol efflux // not recorded /// 0034379 // very-low-density lipoprotein particle assembly // inferred from electronic annotation /// 0034379 // very-low-density lipoprotein particle assembly // not recorded /// 0034435 // cholesterol esterification // inferred from electronic annotation /// 0034435 // cholesterol esterification // not recorded /// 0042986 // positive regulation of amyloid precursor protein biosynthetic process // inferred from electronic annotation /// 0042986 // positive regulation of amyloid precursor protein biosynthetic process // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // not recorded /// 0005792 // microsome // traceable author statement /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0000062 // acyl-CoA binding // inferred from electronic annotation /// 0000062 // acyl-CoA binding // not recorded /// 0004607 // phosphatidylcholine-sterol O-acyltransferase activity // inferred from expression pattern /// 0004772 // sterol O-acyltransferase activity // inferred from direct assay /// 0004772 // sterol O-acyltransferase activity // not recorded /// 0004772 // sterol O-acyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0015485 // cholesterol binding // inferred from electronic annotation /// 0015485 // cholesterol binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0034736 // cholesterol O-acyltransferase activity // inferred from electronic annotation /// 0034736 // cholesterol O-acyltransferase activity // not recorded /// 0034737 // ergosterol O-acyltransferase activity // inferred from electronic annotation /// 0034738 // lanosterol O-acyltransferase activity // inferred from electronic annotation 1374977_at BG373340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373340 /DB_XREF=gi:13269877 /DB_XREF=UI-R-CV1-brx-f-02-0-UI.s1 /CLONE=UI-R-CV1-brx-f-02-0-UI /FEA=EST /CNT=6 /TID=Rn.51523.1 /TIER=Stack /STK=6 /UG=Rn.51523 /UG_TITLE=ESTs BG373340 1374978_at AI102524 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102524 /DB_XREF=gi:3704675 /DB_XREF=EST211813 /CLONE=REMBO76 /FEA=EST /CNT=6 /TID=Rn.13839.1 /TIER=Stack /STK=6 /UG=Rn.13839 /UG_TITLE=ESTs, Highly similar to MOD3 MOUSE MODIFIER 3 PROTEIN (M.musculus) AI102524 chromobox homolog 2 (Pc class homolog, Drosophila) Cbx2 303730 NM_001107071 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006333 // chromatin assembly or disassembly // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0031519 // PcG protein complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0005515 // protein binding // not recorded 1374979_at AI102764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102764 /DB_XREF=gi:3707452 /DB_XREF=EST212053 /CLONE=REMBS22 /FEA=EST /CNT=6 /TID=Rn.20087.1 /TIER=Stack /STK=6 /UG=Rn.20087 /UG_TITLE=ESTs, Weakly similar to Y37E11B.5.p (Caenorhabditis elegans) (C.elegans) AI102764 dihydrouridine synthase 3-like (S. cerevisiae) Dus3l 301122 NM_001034923 0008033 // tRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0017150 // tRNA dihydrouridine synthase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1374980_at BI282049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282049 /DB_XREF=gi:14932409 /DB_XREF=UI-R-CU0s-cbv-h-05-0-UI.s1 /CLONE=UI-R-CU0s-cbv-h-05-0-UI /FEA=EST /CNT=6 /TID=Rn.7862.1 /TIER=Stack /STK=6 /UG=Rn.7862 /UG_TITLE=ESTs BI282049 coiled-coil domain containing 130 Ccdc130 304656 NM_001037644 0009615 // response to virus // inferred from electronic annotation /// 0009615 // response to virus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1374981_at BF399062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399062 /DB_XREF=gi:11384066 /DB_XREF=UI-R-CA1-bja-j-23-0-UI.s1 /CLONE=UI-R-CA1-bja-j-23-0-UI /FEA=EST /CNT=6 /TID=Rn.61766.1 /TIER=Stack /STK=6 /UG=Rn.61766 /UG_TITLE=ESTs BF399062 aminoadipate-semialdehyde dehydrogenase Aasdh 364136 XM_002724973 /// XM_344230 0008152 // metabolic process // inferred from electronic annotation 0000036 // acyl carrier activity // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation 1374982_at BF412002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412002 /DB_XREF=gi:11399991 /DB_XREF=UI-R-BT1-bms-b-12-0-UI.s1 /CLONE=UI-R-BT1-bms-b-12-0-UI /FEA=EST /CNT=6 /TID=Rn.64411.1 /TIER=Stack /STK=6 /UG=Rn.64411 /UG_TITLE=ESTs BF412002 protein phosphatase 1, regulatory (inhibitor) subunit 16A Ppp1r16a 362944 NM_001130566 0005515 // protein binding // not recorded 1374983_at BI289414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289414 /DB_XREF=gi:14946960 /DB_XREF=UI-R-DK0-cfg-f-12-0-UI.s1 /CLONE=UI-R-DK0-cfg-f-12-0-UI /FEA=EST /CNT=6 /TID=Rn.41312.1 /TIER=Stack /STK=6 /UG=Rn.41312 /UG_TITLE=ESTs BI289414 similar to Kelch domain containing 4 RGD1561676 307917 NM_001107438 0005515 // protein binding // inferred from electronic annotation 1374984_at AA858925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858925 /DB_XREF=gi:4229199 /DB_XREF=UI-R-A0-bi-g-10-0-UI.s1 /CLONE=UI-R-A0-bi-g-10-0-UI /FEA=EST /CNT=6 /TID=Rn.2480.1 /TIER=Stack /STK=6 /UG=Rn.2480 /UG_TITLE=ESTs AA858925 erythrocyte protein band 4.1-like 5 Epb4.1l5 304733 NM_001012023 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005912 // adherens junction // inferred from electronic annotation /// 0019898 // extrinsic to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 1374985_at BF399485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399485 /DB_XREF=gi:11384493 /DB_XREF=UI-R-CA1-bjb-b-10-0-UI.s1 /CLONE=UI-R-CA1-bjb-b-10-0-UI /FEA=EST /CNT=6 /TID=Rn.49611.1 /TIER=Stack /STK=6 /UG=Rn.49611 /UG_TITLE=ESTs BF399485 1374986_x_at BI281143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281143 /DB_XREF=gi:14930581 /DB_XREF=UI-R-DD0-bzr-g-09-0-UI.s1 /CLONE=UI-R-DD0-bzr-g-09-0-UI /FEA=EST /CNT=6 /TID=Rn.30313.1 /TIER=Stack /STK=6 /UG=Rn.30313 /UG_TITLE=ESTs, Weakly similar to UHS KerB (Homo sapiens) (H.sapiens) BI281143 hypothetical protein LOC679475 LOC679475 679475 XM_001056542 1374987_at AI232974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232974 /DB_XREF=gi:3816854 /DB_XREF=EST229662 /CLONE=RKICJ39 /FEA=EST /CNT=6 /TID=Rn.13643.1 /TIER=Stack /STK=6 /UG=Rn.13643 /UG_TITLE=ESTs, Highly similar to calcium binding atopy-related autoantigen 1; atopy related autoantigen (Homo sapiens) (H.sapiens) AI232974 1374988_at BF390848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390848 /DB_XREF=gi:11375695 /DB_XREF=UI-R-CA1-bci-b-08-0-UI.s1 /CLONE=UI-R-CA1-bci-b-08-0-UI /FEA=EST /CNT=6 /TID=Rn.63145.1 /TIER=Stack /STK=6 /UG=Rn.63145 /UG_TITLE=ESTs BF390848 1374989_at BI290522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290522 /DB_XREF=gi:14949168 /DB_XREF=UI-R-DK0-cgd-c-04-0-UI.s1 /CLONE=UI-R-DK0-cgd-c-04-0-UI /FEA=EST /CNT=6 /TID=Rn.8275.1 /TIER=Stack /STK=6 /UG=Rn.8275 /UG_TITLE=ESTs BI290522 ankyrin repeat and SOCS box-containing 12 Asb12 503446 NM_001037367 0023034 // intracellular signaling pathway // inferred from electronic annotation 1374990_at AI233786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233786 /DB_XREF=gi:3817666 /DB_XREF=EST230474 /CLONE=RLUCR08 /FEA=EST /CNT=6 /TID=Rn.21738.1 /TIER=Stack /STK=6 /UG=Rn.21738 /UG_TITLE=ESTs AI233786 1374991_at BE107630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107630 /DB_XREF=gi:8499735 /DB_XREF=UI-R-CA0-awv-h-07-0-UI.s1 /CLONE=UI-R-CA0-awv-h-07-0-UI /FEA=EST /CNT=6 /TID=Rn.47634.1 /TIER=Stack /STK=6 /UG=Rn.47634 /UG_TITLE=ESTs BE107630 YdjC homolog (bacterial) Ydjc 287938 NM_001013863 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation 1374992_at AI714115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI714115 /DB_XREF=gi:5017915 /DB_XREF=UI-R-AF1-aaq-f-11-0-UI.s1 /CLONE=UI-R-AF1-aaq-f-11-0-UI /FEA=EST /CNT=6 /TID=Rn.40291.1 /TIER=Stack /STK=6 /UG=Rn.40291 /UG_TITLE=ESTs AI714115 1374993_at BF406627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406627 /DB_XREF=gi:11394602 /DB_XREF=UI-R-BJ2-bpv-c-09-0-UI.s1 /CLONE=UI-R-BJ2-bpv-c-09-0-UI /FEA=EST /CNT=6 /TID=Rn.19204.1 /TIER=Stack /STK=6 /UG=Rn.19204 /UG_TITLE=ESTs, Weakly similar to pseudouridylate synthase; orf, hypothetical protein (Escherichia coli K12) (E.coli) BF406627 RNA pseudouridylate synthase domain containing 1 Rpusd1 287148 NM_001105774 0001522 // pseudouridine synthesis // inferred from electronic annotation /// 0009451 // RNA modification // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0009982 // pseudouridine synthase activity // inferred from electronic annotation 1374994_at BF394281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394281 /DB_XREF=gi:11379145 /DB_XREF=UI-R-CA0-bgr-b-02-0-UI.s1 /CLONE=UI-R-CA0-bgr-b-02-0-UI /FEA=EST /CNT=6 /TID=Rn.61743.1 /TIER=Stack /STK=6 /UG=Rn.61743 /UG_TITLE=ESTs BF394281 1374995_at BI291645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291645 /DB_XREF=gi:14951385 /DB_XREF=UI-R-DN0-ciu-l-15-0-UI.s1 /CLONE=UI-R-DN0-ciu-l-15-0-UI /FEA=EST /CNT=6 /TID=Rn.20517.1 /TIER=Stack /STK=6 /UG=Rn.20517 /UG_TITLE=ESTs, Weakly similar to Y281_HUMAN HYPOTHETICAL PROTEIN KIAA0281 (H.sapiens) BI291645 engulfment and cell motility 3 Elmo3 291962 NM_001030028 0006909 // phagocytosis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017124 // SH3 domain binding // inferred from electronic annotation 1374996_at AI172269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172269 /DB_XREF=gi:3712309 /DB_XREF=EST218270 /CLONE=RMUBX16 /FEA=EST /CNT=6 /TID=Rn.23799.1 /TIER=Stack /STK=6 /UG=Rn.23799 /UG_TITLE=ESTs AI172269 nuclear protein localization 4 homolog (S. cerevisiae) Nploc4 140639 NM_080577 0006944 // cellular membrane fusion // inferred from direct assay /// 0007030 // Golgi organization // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1374997_at BI281589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281589 /DB_XREF=gi:14931475 /DB_XREF=UI-R-CT0s-cau-b-06-0-UI.s1 /CLONE=UI-R-CT0s-cau-b-06-0-UI /FEA=EST /CNT=6 /TID=Rn.28235.1 /TIER=Stack /STK=6 /UG=Rn.28235 /UG_TITLE=ESTs, Highly similar to 2019437A protein Tyr kinase I (H.sapiens) BI281589 mitogen-activated protein kinase kinase kinase 11 Map3k11 309168 NM_001013150 0000080 // G1 phase of mitotic cell cycle // inferred from electronic annotation /// 0000080 // G1 phase of mitotic cell cycle // not recorded /// 0000187 // activation of MAPK activity // not recorded /// 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0007017 // microtubule-based process // not recorded /// 0007254 // JNK cascade // inferred from direct assay /// 0007256 // activation of JNKK activity // inferred from direct assay /// 0007257 // activation of JUN kinase activity // inferred from electronic annotation /// 0007257 // activation of JUN kinase activity // not recorded /// 0008219 // cell death // inferred from mutant phenotype /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0046328 // regulation of JNK cascade // inferred from electronic annotation /// 0046328 // regulation of JNK cascade // not recorded /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0051259 // protein oligomerization // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005874 // microtubule // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004706 // JUN kinase kinase kinase activity // inferred from direct assay /// 0004709 // MAP kinase kinase kinase activity // inferred from direct assay /// 0004709 // MAP kinase kinase kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0031434 // mitogen-activated protein kinase kinase binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0048365 // Rac GTPase binding // inferred from physical interaction 1374998_at BI299522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299522 /DB_XREF=gi:14975802 /DB_XREF=UI-R-CV2-cgu-b-10-0-UI.s1 /CLONE=UI-R-CV2-cgu-b-10-0-UI /FEA=EST /CNT=6 /TID=Rn.66312.1 /TIER=Stack /STK=6 /UG=Rn.66312 /UG_TITLE=ESTs BI299522 1374999_at BF399489 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399489 /DB_XREF=gi:11384497 /DB_XREF=UI-R-CA1-bjb-b-20-0-UI.s1 /CLONE=UI-R-CA1-bjb-b-20-0-UI /FEA=EST /CNT=6 /TID=Rn.14884.1 /TIER=Stack /STK=6 /UG=Rn.14884 /UG_TITLE=ESTs BF399489 1375000_at BF415422 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415422 /DB_XREF=gi:11403446 /DB_XREF=UI-R-CA1-bjz-a-12-0-UI.s1 /CLONE=UI-R-CA1-bjz-a-12-0-UI /FEA=EST /CNT=6 /TID=Rn.63586.1 /TIER=Stack /STK=6 /UG=Rn.63586 /UG_TITLE=ESTs BF415422 1375001_at AA955251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955251 /DB_XREF=gi:4237613 /DB_XREF=UI-R-A1-ej-h-09-0-UI.s1 /CLONE=UI-R-A1-ej-h-09-0-UI /FEA=EST /CNT=6 /TID=Rn.8720.1 /TIER=Stack /STK=6 /UG=Rn.8720 /UG_TITLE=ESTs AA955251 cytokine like 1 Cytl1 498392 NM_001134604 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0050650 // chondroitin sulfate proteoglycan biosynthetic process // inferred from electronic annotation /// 0050650 // chondroitin sulfate proteoglycan biosynthetic process // not recorded /// 0051091 // positive regulation of transcription factor activity // inferred from electronic annotation /// 0051091 // positive regulation of transcription factor activity // not recorded 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded 1375002_at BF393014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393014 /DB_XREF=gi:11377874 /DB_XREF=UI-R-CA0-bfr-h-04-0-UI.s1 /CLONE=UI-R-CA0-bfr-h-04-0-UI /FEA=EST /CNT=6 /TID=Rn.57962.1 /TIER=Stack /STK=6 /UG=Rn.57962 /UG_TITLE=ESTs BF393014 1375003_at AA997359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997359 /DB_XREF=gi:4280882 /DB_XREF=UI-R-C0-hl-c-05-0-UI.s1 /CLONE=UI-R-C0-hl-c-05-0-UI /FEA=EST /CNT=6 /TID=Rn.12754.1 /TIER=Stack /STK=6 /UG=Rn.12754 /UG_TITLE=ESTs, Weakly similar to PLASMINOGEN ACTIVATOR INHIBITOR-2, TYPE A (R.norvegicus) AA997359 serine (or cysteine) peptidase inhibitor, clade B, member 6a Serpinb6a 291085 NM_199085 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375004_at BF409055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409055 /DB_XREF=gi:11397030 /DB_XREF=UI-R-BT1-bkl-e-02-0-UI.s1 /CLONE=UI-R-BT1-bkl-e-02-0-UI /FEA=EST /CNT=6 /TID=Rn.18521.1 /TIER=Stack /STK=6 /UG=Rn.18521 /UG_TITLE=ESTs BF409055 GSG1-like Gsg1l 499263 XM_002725684 /// XM_574558 0016020 // membrane // inferred from electronic annotation 1375005_at BF403824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403824 /DB_XREF=gi:11391799 /DB_XREF=UI-R-CA1-bix-f-07-0-UI.s1 /CLONE=UI-R-CA1-bix-f-07-0-UI /FEA=EST /CNT=6 /TID=Rn.61163.1 /TIER=Stack /STK=6 /UG=Rn.61163 /UG_TITLE=ESTs BF403824 1375006_at BE121050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121050 /DB_XREF=gi:8513155 /DB_XREF=UI-R-CA0-bar-e-06-0-UI.s1 /CLONE=UI-R-CA0-bar-e-06-0-UI /FEA=EST /CNT=6 /TID=Rn.13120.1 /TIER=Stack /STK=6 /UG=Rn.13120 /UG_TITLE=ESTs BE121050 1375007_at BF400779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400779 /DB_XREF=gi:11388749 /DB_XREF=UI-R-CA0-bhf-d-11-0-UI.s1 /CLONE=UI-R-CA0-bhf-d-11-0-UI /FEA=EST /CNT=6 /TID=Rn.23897.1 /TIER=Stack /STK=6 /UG=Rn.23897 /UG_TITLE=ESTs BF400779 1375008_at BF410389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410389 /DB_XREF=gi:11398364 /DB_XREF=UI-R-CA1-bjw-h-09-0-UI.s1 /CLONE=UI-R-CA1-bjw-h-09-0-UI /FEA=EST /CNT=6 /TID=Rn.41092.1 /TIER=Stack /STK=6 /UG=Rn.41092 /UG_TITLE=ESTs, Weakly similar to CNK_RAT Cytokine-inducible serinethreonine-protein kinase (FGF-inducible kinase) (R.norvegicus) BF410389 aurora kinase C Aurkc 292554 NM_001106221 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1375009_at AW254363 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254363 /DB_XREF=gi:6597954 /DB_XREF=UI-R-BJ0-aei-a-02-0-UI.s1 /CLONE=UI-R-BJ0-aei-a-02-0-UI /FEA=EST /CNT=6 /TID=Rn.19641.1 /TIER=Stack /STK=6 /UG=Rn.19641 /UG_TITLE=ESTs, Moderately similar to unknown (H.sapiens) AW254363 nudix (nucleoside diphosphate linked moiety X)-type motif 14 Nudt14 299346 NM_001106760 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375010_at AI177761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177761 /DB_XREF=gi:3728399 /DB_XREF=EST221404 /CLONE=RPLCF81 /FEA=EST /CNT=6 /TID=Rn.12478.1 /TIER=Stack /STK=6 /UG=Rn.12478 /UG_TITLE=ESTs, Weakly similar to LMP1 RAT LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN 1 PRECURSOR (R.norvegicus) AI177761 Cd68 molecule Cd68 287435 NM_001031638 0016020 // membrane // inferred from electronic annotation 1375011_at AA818819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818819 /DB_XREF=gi:4227493 /DB_XREF=UI-R-A0-ar-d-05-0-UI.s1 /CLONE=UI-R-A0-ar-d-05-0-UI /FEA=EST /CNT=6 /TID=Rn.16544.1 /TIER=Stack /STK=6 /UG=Rn.16544 /UG_TITLE=ESTs AA818819 1375012_at BF399627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399627 /DB_XREF=gi:11384636 /DB_XREF=UI-R-CA0-bhu-f-02-0-UI.s2 /CLONE=UI-R-CA0-bhu-f-02-0-UI /FEA=EST /CNT=6 /TID=Rn.28086.1 /TIER=Stack /STK=6 /UG=Rn.28086 /UG_TITLE=ESTs BF399627 PDZ domain containing 4 Pdzd4 293856 NM_001135836 0005515 // protein binding // inferred from electronic annotation 1375013_at AW533445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533445 /DB_XREF=gi:7175859 /DB_XREF=UI-R-BU0-ani-a-03-0-UI.s1 /CLONE=UI-R-BU0-ani-a-03-0-UI /FEA=EST /CNT=6 /TID=Rn.40737.1 /TIER=Stack /STK=6 /UG=Rn.40737 /UG_TITLE=ESTs AW533445 1375014_at BI274857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274857 /DB_XREF=gi:14886163 /DB_XREF=UI-R-CX0-bxa-h-04-0-UI.s1 /CLONE=UI-R-CX0-bxa-h-04-0-UI /FEA=EST /CNT=6 /TID=Rn.49710.1 /TIER=Stack /STK=6 /UG=Rn.49710 /UG_TITLE=ESTs BI274857 ADP-ribosylation factor-like 4C Arl4c 367311 XR_085918 /// XR_086347 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1375015_at AA892526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892526 /DB_XREF=gi:3019405 /DB_XREF=EST196329 /CLONE=RKIAS49 /FEA=EST /CNT=6 /TID=Rn.65929.1 /TIER=Stack /STK=6 /UG=Rn.65929 /UG_TITLE=ESTs AA892526 similar to transmembrane channel-like protein 6 isoform 1 LOC688280 688280 XM_002724579 0016021 // integral to membrane // inferred from electronic annotation 1375016_at AI406912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406912 /DB_XREF=gi:4250416 /DB_XREF=EST235200 /CLONE=ROVDU72 /FEA=EST /CNT=6 /TID=Rn.24461.1 /TIER=Stack /STK=6 /UG=Rn.24461 /UG_TITLE=ESTs AI406912 1375017_at BI296120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296120 /DB_XREF=gi:14960243 /DB_XREF=UI-R-DK0-cew-e-11-0-UI.s1 /CLONE=UI-R-DK0-cew-e-11-0-UI /FEA=EST /CNT=6 /TID=Rn.44208.1 /TIER=Stack /STK=6 /UG=Rn.44208 /UG_TITLE=ESTs BI296120 1375018_at BF409977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409977 /DB_XREF=gi:11397952 /DB_XREF=UI-R-CA0-bjs-a-09-0-UI.s1 /CLONE=UI-R-CA0-bjs-a-09-0-UI /FEA=EST /CNT=6 /TID=Rn.52207.1 /TIER=Stack /STK=6 /UG=Rn.52207 /UG_TITLE=ESTs BF409977 similar to hypothetical protein D630003M21 RGD1563354 311592 XM_001068317 /// XM_230799 1375019_at AI101886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101886 /DB_XREF=gi:3706735 /DB_XREF=EST211175 /CLONE=RBRBW41 /FEA=EST /CNT=6 /TID=Rn.40472.1 /TIER=Stack /STK=6 /UG=Rn.40472 /UG_TITLE=ESTs, Highly similar to T17207 hypothetical protein DKFZp586F0222.1 (H.sapiens) AI101886 heterogeneous nuclear ribonucleoprotein H3 (2H9) Hnrnph3 361838 NM_001108532 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375020_at AI706777 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI706777 /DB_XREF=gi:4994677 /DB_XREF=UI-R-AA1-aab-f-09-0-UI.s1 /CLONE=UI-R-AA1-aab-f-09-0-UI /FEA=EST /CNT=6 /TID=Rn.37826.1 /TIER=Stack /STK=6 /UG=Rn.37826 /UG_TITLE=ESTs AI706777 Ras and Rab interactor 3 Rin3 314397 NM_001108052 0007165 // signal transduction // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375021_at BI298773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298773 /DB_XREF=gi:14975053 /DB_XREF=UI-R-CV2-chn-e-07-0-UI.s1 /CLONE=UI-R-CV2-chn-e-07-0-UI /FEA=EST /CNT=6 /TID=Rn.66188.1 /TIER=Stack /STK=6 /UG=Rn.66188 /UG_TITLE=ESTs, Moderately similar to A35098 MHC class III histocompatibility antigen HLA-B-associated transcript 3 (H.sapiens) BI298773 1375022_at AI548730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548730 /DB_XREF=gi:4466218 /DB_XREF=UI-R-C3-tw-h-03-0-UI.s1 /CLONE=UI-R-C3-tw-h-03-0-UI /FEA=EST /CNT=6 /TID=Rn.8386.1 /TIER=Stack /STK=6 /UG=Rn.8386 /UG_TITLE=ESTs, Weakly similar to RCA1_YEAST MITOCHONDRIAL RESPIRATORY CHAIN COMPLEXES ASSEMBLY PROTEIN RCA1 (TAT-BINDING HOMOLOG 12) (S.cerevisiae) AI548730 AFG3(ATPase family gene 3)-like 2 (yeast) Afg3l2 307350 NM_001134864 0006508 // proteolysis // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007528 // neuromuscular junction development // inferred from electronic annotation /// 0007528 // neuromuscular junction development // not recorded /// 0016265 // death // inferred from electronic annotation /// 0016265 // death // not recorded /// 0021675 // nerve development // inferred from electronic annotation /// 0021675 // nerve development // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0042552 // myelination // inferred from electronic annotation /// 0042552 // myelination // not recorded /// 0048747 // muscle fiber development // inferred from electronic annotation /// 0048747 // muscle fiber development // not recorded /// 0060013 // righting reflex // inferred from electronic annotation /// 0060013 // righting reflex // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1375023_at BE104415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104415 /DB_XREF=gi:8496515 /DB_XREF=UI-R-BX0-aro-f-04-0-UI.s1 /CLONE=UI-R-BX0-aro-f-04-0-UI /FEA=EST /CNT=6 /TID=Rn.48613.1 /TIER=Stack /STK=6 /UG=Rn.48613 /UG_TITLE=ESTs BE104415 proline rich 12 Prr12 361569 XM_001080668 /// XM_341852 0003677 // DNA binding // inferred from electronic annotation 1375024_at AI410336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410336 /DB_XREF=gi:4253840 /DB_XREF=EST238629 /CLONE=RKIDX78 /FEA=EST /CNT=6 /TID=Rn.43835.1 /TIER=Stack /STK=6 /UG=Rn.43835 /UG_TITLE=ESTs, Weakly similar to YGF0_YEAST HYPOTHETICAL 30.8 KD PROTEIN IN DUP2-TIF4632 INTERGENIC REGION (S.cerevisiae) AI410336 tRNA-yW synthesizing protein 3 homolog (S. cerevisiae) Tyw3 499731 XM_001080203 /// XM_575065 1375025_at BE099992 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099992 /DB_XREF=gi:8491877 /DB_XREF=UI-R-BJ1-atr-e-03-0-UI.s1 /CLONE=UI-R-BJ1-atr-e-03-0-UI /FEA=EST /CNT=6 /TID=Rn.49927.1 /TIER=Stack /STK=6 /UG=Rn.49927 /UG_TITLE=ESTs, Moderately similar to Ca+Calmodulin-dependent protein kinase kinase beta (CaM-kinase kinase beta) (Rattus norvegicus) (R.norvegicus) BE099992 calcium/calmodulin-dependent protein kinase kinase 2, beta Camkk2 83506 NM_031338 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // traceable author statement /// 0032147 // activation of protein kinase activity // inferred from direct assay /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from sequence or structural similarity 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from direct assay /// 0004683 // calmodulin-dependent protein kinase activity // traceable author statement /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030295 // protein kinase activator activity // traceable author statement 1375026_at AI105369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105369 /DB_XREF=gi:3709464 /DB_XREF=EST214658 /CLONE=RKIBJ43 /FEA=EST /CNT=6 /TID=Rn.13485.1 /TIER=Stack /STK=6 /UG=Rn.13485 /UG_TITLE=ESTs, Weakly similar to CALM_HUMAN CALMODULIN (R.norvegicus) AI105369 calmodulin-like 4 Calml4 691455 NM_001127575 0005509 // calcium ion binding // inferred from electronic annotation 1375027_at AI407365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407365 /DB_XREF=gi:4250869 /DB_XREF=EST235654 /CLONE=ROVED08 /FEA=EST /CNT=6 /TID=Rn.43385.1 /TIER=Stack /STK=6 /UG=Rn.43385 /UG_TITLE=ESTs AI407365 1375028_at AI409635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409635 /DB_XREF=gi:4253139 /DB_XREF=EST237927 /CLONE=ROVEN81 /FEA=EST /CNT=6 /TID=Rn.22936.1 /TIER=Stack /STK=6 /UG=Rn.22936 /UG_TITLE=ESTs AI409635 1375029_at AI235912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235912 /DB_XREF=gi:3829418 /DB_XREF=EST232474 /CLONE=ROVCY53 /FEA=EST /CNT=6 /TID=Rn.25367.1 /TIER=Stack /STK=6 /UG=Rn.25367 /UG_TITLE=ESTs AI235912 ubiquitin specific peptidase like 1 Uspl1 288447 NM_001105906 /// NM_001198555 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation 1375030_at AI639285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639285 /DB_XREF=gi:4700319 /DB_XREF=rx01438s /CLONE=rx01438 /FEA=EST /CNT=6 /TID=Rn.28077.1 /TIER=Stack /STK=6 /UG=Rn.28077 /UG_TITLE=ESTs AI639285 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5 B3galt5 288161 NM_001105887 0006486 // protein glycosylation // inferred from electronic annotation 0005783 // endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008378 // galactosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1375031_at AI171653 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171653 /DB_XREF=gi:3711693 /DB_XREF=EST217626 /CLONE=RMUBN87 /FEA=EST /CNT=6 /TID=Rn.20503.1 /TIER=Stack /STK=6 /UG=Rn.20503 /UG_TITLE=ESTs, Weakly similar to NEO1_RAT NEOGENIN PRECURSOR (R.norvegicus) AI171653 titin Ttn 84015 XM_001065955 /// XM_575155 0001701 // in utero embryonic development // not recorded /// 0001756 // somitogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006936 // muscle contraction // not recorded /// 0007076 // mitotic chromosome condensation // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007512 // adult heart development // not recorded /// 0030240 // skeletal muscle thin filament assembly // not recorded /// 0030241 // skeletal muscle myosin thick filament assembly // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0043056 // forward locomotion // not recorded /// 0045214 // sarcomere organization // inferred from direct assay /// 0045214 // sarcomere organization // not recorded /// 0045859 // regulation of protein kinase activity // not recorded /// 0048739 // cardiac muscle fiber development // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0051592 // response to calcium ion // not recorded /// 0055002 // striated muscle cell development // not recorded /// 0055003 // cardiac myofibril assembly // not recorded /// 0055008 // cardiac muscle tissue morphogenesis // not recorded 0000794 // condensed nuclear chromosome // not recorded /// 0005576 // extracellular region // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005865 // striated muscle thin filament // not recorded /// 0030016 // myofibril // inferred from direct assay /// 0030017 // sarcomere // not recorded /// 0030018 // Z disc // not recorded /// 0030018 // Z disc // inferred from direct assay /// 0031430 // M band // not recorded /// 0031672 // A band // not recorded /// 0031674 // I band // inferred from direct assay /// 0031674 // I band // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008307 // structural constituent of muscle // not recorded /// 0008307 // structural constituent of muscle // inferred from electronic annotation /// 0008307 // structural constituent of muscle // inferred from expression pattern /// 0031433 // telethonin binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0043621 // protein self-association // not recorded /// 0051015 // actin filament binding // not recorded /// 0051393 // alpha-actinin binding // not recorded 1375032_at AI412533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412533 /DB_XREF=gi:4256037 /DB_XREF=EST240832 /CLONE=RBRDT51 /FEA=EST /CNT=6 /TID=Rn.27659.1 /TIER=Stack /STK=6 /UG=Rn.27659 /UG_TITLE=ESTs AI412533 1375033_at AI406826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406826 /DB_XREF=gi:4250330 /DB_XREF=EST235113 /CLONE=RBRDI93 /FEA=EST /CNT=6 /TID=Rn.43113.1 /TIER=Stack /STK=6 /UG=Rn.43113 /UG_TITLE=ESTs, Weakly similar to MITOCHONDRIAL CARNITINE O-PALMITOYLTRANSFERASE I, LIVER ISOFORM (R.norvegicus) AI406826 carnitine palmitoyltransferase 1c Cpt1c 308579 NM_001034925 0009437 // carnitine metabolic process // inferred from direct assay 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay 0004095 // carnitine O-palmitoyltransferase activity // inferred from direct assay /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1375034_at AI410383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410383 /DB_XREF=gi:4253887 /DB_XREF=EST238676 /CLONE=RKIDL07 /FEA=EST /CNT=6 /TID=Rn.6849.1 /TIER=Stack /STK=6 /UG=Rn.6849 /UG_TITLE=ESTs AI410383 phospholipase A2, group XV Pla2g15 361401 NM_001004277 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006672 // ceramide metabolic process // inferred from electronic annotation /// 0006672 // ceramide metabolic process // not recorded /// 0046470 // phosphatidylcholine metabolic process // inferred from mutant phenotype 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005764 // lysosome // traceable author statement 0004607 // phosphatidylcholine-sterol O-acyltransferase activity // inferred from electronic annotation /// 0004622 // lysophospholipase activity // not recorded /// 0047499 // calcium-independent phospholipase A2 activity // inferred from direct assay /// 0047499 // calcium-independent phospholipase A2 activity // not recorded /// 0047499 // calcium-independent phospholipase A2 activity // inferred from electronic annotation 1375035_at AI169627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169627 /DB_XREF=gi:3709667 /DB_XREF=EST215514 /CLONE=RKIBV41 /FEA=EST /CNT=6 /TID=Rn.16486.1 /TIER=Stack /STK=6 /UG=Rn.16486 /UG_TITLE=ESTs AI169627 1375036_at AI172146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172146 /DB_XREF=gi:3712186 /DB_XREF=EST218141 /CLONE=RMUBV51 /FEA=EST /CNT=6 /TID=Rn.18232.1 /TIER=Stack /STK=6 /UG=Rn.18232 /UG_TITLE=ESTs AI172146 1375037_at AI176244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176244 /DB_XREF=gi:3726882 /DB_XREF=EST219825 /CLONE=ROVBP08 /FEA=EST /CNT=6 /TID=Rn.23976.1 /TIER=Stack /STK=6 /UG=Rn.23976 /UG_TITLE=ESTs AI176244 SAPS domain family, member 3 Saps3 309144 XR_085730 /// XR_086138 1375038_at AI112199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112199 /DB_XREF=gi:3512148 /DB_XREF=UI-R-Y0-ml-g-10-0-UI.s1 /CLONE=UI-R-Y0-ml-g-10-0-UI /FEA=EST /CNT=6 /TID=Rn.22080.1 /TIER=Stack /STK=6 /UG=Rn.22080 /UG_TITLE=ESTs AI112199 1375039_x_at BI280865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280865 /DB_XREF=gi:14930052 /DB_XREF=UI-R-DC0-bzp-a-11-0-UI.s1 /CLONE=UI-R-DC0-bzp-a-11-0-UI /FEA=EST /CNT=6 /TID=Rn.72236.1 /TIER=Stack /STK=6 /UG=Rn.72236 /UG_TITLE=ESTs BI280865 similar to Fc fragment of IgG binding protein; IgG Fc binding protein RGD1311906 292746 NM_001164656 1375040_at AW252129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252129 /DB_XREF=gi:6595720 /DB_XREF=UI-R-BJ0-aee-e-07-0-UI.s1 /CLONE=UI-R-BJ0-aee-e-07-0-UI /FEA=EST /CNT=6 /TID=Rn.18639.1 /TIER=Stack /STK=6 /UG=Rn.18639 /UG_TITLE=ESTs, Weakly similar to NF-E2-related factor 2 (Rattus norvegicus) (R.norvegicus) AW252129 nuclear factor, erythroid derived 2 Nfe2 366998 NM_001012224 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded /// 0050699 // WW domain binding // inferred from electronic annotation /// 0050699 // WW domain binding // not recorded 1375041_at AI599362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599362 /DB_XREF=gi:4608410 /DB_XREF=EST251065 /CLONE=REMEN47 /FEA=EST /CNT=6 /TID=Rn.29273.1 /TIER=Stack /STK=6 /UG=Rn.29273 /UG_TITLE=ESTs AI599362 similar to F-box only protein 27 RGD1563982 499114 NM_001110491 0030163 // protein catabolic process // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1375042_at BI287504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287504 /DB_XREF=gi:14943186 /DB_XREF=UI-R-CW0s-cci-b-08-0-UI.s1 /CLONE=UI-R-CW0s-cci-b-08-0-UI /FEA=EST /CNT=6 /TID=Rn.12688.1 /TIER=Stack /STK=6 /UG=Rn.12688 /UG_TITLE=ESTs, Weakly similar to S47961 glucosyltransferase (EC 2.4.1.-) - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BI287504 asparagine-linked glycosylation 8, alpha-1,3-glucosyltransferase homolog (S. cerevisiae) Alg8 293129 NM_001034127 0006487 // protein N-linked glycosylation // not recorded 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation 0000033 // alpha-1,3-mannosyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1375043_at BF415939 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415939 /DB_XREF=gi:11403928 /DB_XREF=UI-R-CA0-bkp-b-06-0-UI.s1 /CLONE=UI-R-CA0-bkp-b-06-0-UI /FEA=EST /CNT=6 /TID=Rn.18303.1 /TIER=Stack /STK=6 /UG=Rn.18303 /UG_TITLE=ESTs BF415939 FBJ osteosarcoma oncogene Fos 314322 NM_022197 0001661 // conditioned taste aversion // inferred from expression pattern /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006950 // response to stress // inferred from expression pattern /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007565 // female pregnancy // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0009409 // response to cold // inferred from expression pattern /// 0009416 // response to light stimulus // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009629 // response to gravity // inferred from expression pattern /// 0009636 // response to toxin // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030431 // sleep // inferred from expression pattern /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0031668 // cellular response to extracellular stimulus // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0034614 // cellular response to reactive oxygen species // inferred from electronic annotation /// 0034614 // cellular response to reactive oxygen species // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded /// 0060395 // SMAD protein signal transduction // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // not recorded /// 0019717 // synaptosome // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred by curator /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0070412 // R-SMAD binding // inferred from electronic annotation /// 0070412 // R-SMAD binding // not recorded 1375044_at AI073208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073208 /DB_XREF=gi:3399402 /DB_XREF=UI-R-Y0-lx-b-07-0-UI.s1 /CLONE=UI-R-Y0-lx-b-07-0-UI /FEA=EST /CNT=6 /TID=Rn.20387.1 /TIER=Stack /STK=6 /UG=Rn.20387 /UG_TITLE=ESTs AI073208 1375045_at BM387520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387520 /DB_XREF=gi:18187573 /DB_XREF=UI-R-CN1-cjl-c-18-0-UI.s1 /CLONE=UI-R-CN1-cjl-c-18-0-UI /FEA=EST /CNT=6 /TID=Rn.36312.1 /TIER=Stack /STK=6 /UG=Rn.36312 /UG_TITLE=ESTs BM387520 1375046_at AA964581 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964581 /DB_XREF=gi:4279455 /DB_XREF=UI-R-E1-go-d-10-0-UI.s1 /CLONE=UI-R-E1-go-d-10-0-UI /FEA=EST /CNT=6 /TID=Rn.11849.1 /TIER=Stack /STK=6 /UG=Rn.11849 /UG_TITLE=ESTs, Weakly similar to nascent polypeptide-associated complex alpha polypeptide (Mus musculus) (M.musculus) AA964581 NAC alpha domain containing Nacad 289786 NM_001100655 /// XM_001069804 /// XM_214092 1375047_at BI295760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295760 /DB_XREF=gi:14959530 /DB_XREF=UI-R-DK0-cfa-c-07-0-UI.s1 /CLONE=UI-R-DK0-cfa-c-07-0-UI /FEA=EST /CNT=6 /TID=Rn.17703.1 /TIER=Stack /STK=6 /UG=Rn.17703 /UG_TITLE=ESTs, Weakly similar to TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (R.norvegicus) BI295760 spermatogenesis associated 5 Spata5 361935 NM_001108549 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1375048_at AA799566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799566 /DB_XREF=gi:2862521 /DB_XREF=EST189063 /CLONE=RHEAC61 /FEA=EST /CNT=6 /TID=Rn.36126.1 /TIER=Stack /STK=6 /UG=Rn.36126 /LL=171124 /UG_GENE=LOC171124 /UG_TITLE=incisor protein AA799566 1375049_at AI711132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711132 /DB_XREF=gi:5000908 /DB_XREF=UI-R-AD1-zo-e-05-0-UI.s1 /CLONE=UI-R-AD1-zo-e-05-0-UI /FEA=EST /CNT=6 /TID=Rn.37338.2 /TIER=Stack /STK=6 /UG=Rn.37338 /UG_TITLE=ESTs, Highly similar to T17298 hypothetical protein DKFZp586M2123.1 (H.sapiens) AI711132 latent transforming growth factor beta binding protein 3 Ltbp3 83838 NM_001191561 /// XM_002725776 /// XM_002728859 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1375050_at BI294558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294558 /DB_XREF=gi:14957126 /DB_XREF=UI-R-DK0-cel-f-07-0-UI.s1 /CLONE=UI-R-DK0-cel-f-07-0-UI /FEA=EST /CNT=6 /TID=Rn.16362.1 /TIER=Stack /STK=6 /UG=Rn.16362 /UG_TITLE=ESTs BI294558 G protein-regulated inducer of neurite outgrowth 1 Gprin1 364676 XM_001070221 /// XM_344571 0031175 // neuron projection development // not recorded 0005886 // plasma membrane // not recorded 0051219 // phosphoprotein binding // not recorded 1375051_at BE104792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104792 /DB_XREF=gi:8496892 /DB_XREF=UI-R-BX0-art-f-10-0-UI.s1 /CLONE=UI-R-BX0-art-f-10-0-UI /FEA=EST /CNT=6 /TID=Rn.20417.1 /TIER=Stack /STK=6 /UG=Rn.20417 /UG_TITLE=ESTs BE104792 1375052_at AI229218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229218 /DB_XREF=gi:3813105 /DB_XREF=EST225913 /CLONE=RBRDF55 /FEA=EST /CNT=6 /TID=Rn.2825.1 /TIER=Stack /STK=6 /UG=Rn.2825 /UG_TITLE=ESTs AI229218 family with sequence similarity 148, member B Fam148b 501015 XM_001056441 /// XM_576426 1375053_at BE329035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329035 /DB_XREF=gi:9202811 /DB_XREF=hq32h10.x1 /CLONE=IMAGE:3121123 /FEA=EST /CNT=6 /TID=Rn.11842.1 /TIER=Stack /STK=6 /UG=Rn.11842 /UG_TITLE=ESTs BE329035 1375054_at AI233709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233709 /DB_XREF=gi:3817589 /DB_XREF=EST230397 /CLONE=RKIDJ19 /FEA=EST /CNT=6 /TID=Rn.18197.1 /TIER=Stack /STK=6 /UG=Rn.18197 /UG_TITLE=ESTs AI233709 1375055_at AI112084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112084 /DB_XREF=gi:3512033 /DB_XREF=UI-R-Y0-mo-b-02-0-UI.s1 /CLONE=UI-R-Y0-mo-b-02-0-UI /FEA=EST /CNT=6 /TID=Rn.20205.1 /TIER=Stack /STK=6 /UG=Rn.20205 /UG_TITLE=ESTs AI112084 junctional sarcoplasmic reticulum protein 1 Jsrp1 690423 NM_001109591 0016529 // sarcoplasmic reticulum // not recorded 1375056_at AA943310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943310 /DB_XREF=gi:3103226 /DB_XREF=EST198809 /CLONE=RBRAI05 /FEA=EST /CNT=6 /TID=Rn.2479.1 /TIER=Stack /STK=6 /UG=Rn.2479 /UG_TITLE=ESTs AA943310 rCG57079-like LOC100361733 100361733 XM_002728098 1375057_at BG377313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377313 /DB_XREF=gi:13301785 /DB_XREF=UI-R-CU0-bvc-a-03-0-UI.s1 /CLONE=UI-R-CU0-bvc-a-03-0-UI /FEA=EST /CNT=6 /TID=Rn.39274.1 /TIER=Stack /STK=6 /UG=Rn.39274 /UG_TITLE=ESTs, Weakly similar to C151_RAT PLATELET ENDOTHELIAL TETRASPAN ANTIGEN 3 (CD151 ANTIGEN) (R.norvegicus) BG377313 tetraspanin 18 Tspan18 311210 NM_001107750 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1375058_at BF396164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396164 /DB_XREF=gi:11381176 /DB_XREF=UI-R-BS2-bdv-e-04-0-UI.s1 /CLONE=UI-R-BS2-bdv-e-04-0-UI /FEA=EST /CNT=6 /TID=Rn.54326.1 /TIER=Stack /STK=6 /UG=Rn.54326 /UG_TITLE=ESTs, Moderately similar to U2R2 MOUSE U2 SMALL NUCLEAR RIBONUCLEOPROTEIN AUXILIARY FACTOR 35 KD SUBUNIT RELATED-PROTEIN 2 (M.musculus) BF396164 zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2 Zrsr2 302670 XM_001067753 /// XM_217612 0005634 // nucleus // inferred from electronic annotation /// 0005689 // U12-type spliceosomal complex // not recorded /// 0005730 // nucleolus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375059_at AI178854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178854 /DB_XREF=gi:3729492 /DB_XREF=EST222536 /CLONE=RSPBQ23 /FEA=EST /CNT=6 /TID=Rn.23567.1 /TIER=Stack /STK=6 /UG=Rn.23567 /UG_TITLE=ESTs AI178854 zinc finger protein 652 Znf652 497984 NM_001080207 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375060_at BE112912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112912 /DB_XREF=gi:8505017 /DB_XREF=UI-R-BJ1-awa-c-08-0-UI.s1 /CLONE=UI-R-BJ1-awa-c-08-0-UI /FEA=EST /CNT=6 /TID=Rn.8751.1 /TIER=Stack /STK=6 /UG=Rn.8751 /UG_TITLE=ESTs BE112912 1375061_at BM383803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383803 /DB_XREF=gi:18183856 /DB_XREF=UI-R-DM1-ckb-j-23-0-UI.s1 /CLONE=UI-R-DM1-ckb-j-23-0-UI /FEA=EST /CNT=6 /TID=Rn.21237.1 /TIER=Stack /STK=6 /UG=Rn.21237 /UG_TITLE=ESTs BM383803 peptidylprolyl isomerase (cyclophilin)-like 4 Ppil4 361449 NM_001108457 0006457 // protein folding // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1375062_at BM392237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392237 /DB_XREF=gi:18192290 /DB_XREF=UI-R-DO1-ckp-f-23-0-UI.s1 /CLONE=UI-R-DO1-ckp-f-23-0-UI /FEA=EST /CNT=6 /TID=Rn.64042.1 /TIER=Stack /STK=6 /UG=Rn.64042 /UG_TITLE=ESTs, Weakly similar to AP50_HUMAN CLATHRIN COAT ASSEMBLY PROTEIN AP50 (R.norvegicus) BM392237 similar to Adaptor-related protein complex 1, mu 2 subunit (AP1M2) RGD1561490 367038 NM_001108996 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0030131 // clathrin adaptor complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1375063_at BI274344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274344 /DB_XREF=gi:14885187 /DB_XREF=UI-R-CW0-bwh-g-10-0-UI.s1 /CLONE=UI-R-CW0-bwh-g-10-0-UI /FEA=EST /CNT=6 /TID=Rn.23822.1 /TIER=Stack /STK=6 /UG=Rn.23822 /UG_TITLE=ESTs BI274344 similar to MGC45438 protein RGD1565166 287059 NM_001105762 1375064_at AI104736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104736 /DB_XREF=gi:3709026 /DB_XREF=EST214025 /CLONE=RHECI38 /FEA=EST /CNT=6 /TID=Rn.33797.1 /TIER=Stack /STK=6 /UG=Rn.33797 /UG_TITLE=ESTs AI104736 1375065_at BI291326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291326 /DB_XREF=gi:14950760 /DB_XREF=UI-R-CV2-cgo-e-07-0-UI.s1 /CLONE=UI-R-CV2-cgo-e-07-0-UI /FEA=EST /CNT=6 /TID=Rn.53275.1 /TIER=Stack /STK=6 /UG=Rn.53275 /UG_TITLE=ESTs, Weakly similar to TC17 RAT TRANSCRIPTION FACTOR 17 (R.norvegicus) BI291326 1375066_at H33003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33003 /DB_XREF=gi:978420 /DB_XREF=EST108601 /CLONE=RPNAD16 /FEA=EST /CNT=6 /TID=Rn.14618.1 /TIER=Stack /STK=6 /UG=Rn.14618 /UG_TITLE=ESTs, Weakly similar to JC1241 beta-interferon-induced protein - rat (R.norvegicus) H33003 similar to RIKEN cDNA 6330512M04 gene RGD1563319 293632 XM_001063662 /// XM_215129 0009607 // response to biotic stimulus // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 1375067_at AI555354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555354 /DB_XREF=gi:4487717 /DB_XREF=UI-R-C2p-qw-g-04-0-UI.s1 /CLONE=UI-R-C2p-qw-g-04-0-UI /FEA=EST /CNT=6 /TID=Rn.35308.1 /TIER=Stack /STK=6 /UG=Rn.35308 /UG_TITLE=ESTs AI555354 1375068_at AI410604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410604 /DB_XREF=gi:4254108 /DB_XREF=EST238897 /CLONE=RHECV89 /FEA=EST /CNT=6 /TID=Rn.43272.1 /TIER=Stack /STK=6 /UG=Rn.43272 /UG_TITLE=ESTs AI410604 mediator complex subunit 22 Med22 499762 NM_001077679 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0016592 // mediator complex // inferred from electronic annotation /// 0016592 // mediator complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation 1375069_at BG380530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380530 /DB_XREF=gi:13305002 /DB_XREF=UI-R-CT0-bty-d-09-0-UI.s1 /CLONE=UI-R-CT0-bty-d-09-0-UI /FEA=EST /CNT=6 /TID=Rn.48823.1 /TIER=Stack /STK=6 /UG=Rn.48823 /UG_TITLE=ESTs BG380530 family with sequence similarity 116, member B Fam116b 362983 NM_001108749 1375070_at BG376853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376853 /DB_XREF=gi:13301325 /DB_XREF=UI-R-CA1-bli-a-05-0-UI.s1 /CLONE=UI-R-CA1-bli-a-05-0-UI /FEA=EST /CNT=6 /TID=Rn.53766.1 /TIER=Stack /STK=6 /UG=Rn.53766 /UG_TITLE=ESTs, Highly similar to BMP2 RAT BONE MORPHOGENETIC PROTEIN 2 PRECURSOR (R.norvegicus) BG376853 1375071_at BE119719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119719 /DB_XREF=gi:8511824 /DB_XREF=UI-R-CA0-bai-b-10-0-UI.s1 /CLONE=UI-R-CA0-bai-b-10-0-UI /FEA=EST /CNT=6 /TID=Rn.58778.1 /TIER=Stack /STK=6 /UG=Rn.58778 /UG_TITLE=ESTs BE119719 nucleoporin 133 Nup133 292085 XM_001053507 /// XM_002728604 0005515 // protein binding // inferred from electronic annotation 1375072_at AA926103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926103 /DB_XREF=gi:4237294 /DB_XREF=UI-R-A1-eu-d-05-0-UI.s1 /CLONE=UI-R-A1-eu-d-05-0-UI /FEA=EST /CNT=6 /TID=Rn.15657.1 /TIER=Stack /STK=6 /UG=Rn.15657 /UG_TITLE=ESTs AA926103 1375073_at BE107313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107313 /DB_XREF=gi:8499418 /DB_XREF=UI-R-BS1-ays-c-12-0-UI.s1 /CLONE=UI-R-BS1-ays-c-12-0-UI /FEA=EST /CNT=6 /TID=Rn.3274.1 /TIER=Stack /STK=6 /UG=Rn.3274 /UG_TITLE=ESTs, Moderately similar to YU20 MOUSE HYPOTHETICAL PROTEIN (M.musculus) BE107313 Similar to hypothetical protein MGC45873 RGD1310271 313778 XM_233727 1375074_at BE113756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113756 /DB_XREF=gi:8505861 /DB_XREF=UI-R-BJ1-awh-a-11-0-UI.s1 /CLONE=UI-R-BJ1-awh-a-11-0-UI /FEA=EST /CNT=6 /TID=Rn.33571.1 /TIER=Stack /STK=6 /UG=Rn.33571 /UG_TITLE=ESTs BE113756 TBK1 binding protein 1 Tbkbp1 266764 NM_172021 0045087 // innate immune response // inferred from electronic annotation 1375075_at BI300000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300000 /DB_XREF=gi:14976280 /DB_XREF=UI-R-CV2-chz-g-04-0-UI.s1 /CLONE=UI-R-CV2-chz-g-04-0-UI /FEA=EST /CNT=6 /TID=Rn.67031.1 /TIER=Stack /STK=6 /UG=Rn.67031 /UG_TITLE=ESTs BI300000 1375076_at AI112007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112007 /DB_XREF=gi:3511956 /DB_XREF=UI-R-Y0-mp-c-09-0-UI.s1 /CLONE=UI-R-Y0-mp-c-09-0-UI /FEA=EST /CNT=6 /TID=Rn.26693.1 /TIER=Stack /STK=6 /UG=Rn.26693 /UG_TITLE=ESTs AI112007 leucine rich repeat containing 46 Lrrc46 287653 NM_001004201 0006508 // proteolysis // inferred from electronic annotation 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1375077_at BE099881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099881 /DB_XREF=gi:8491763 /DB_XREF=UI-R-BJ1-atl-c-05-0-UI.s1 /CLONE=UI-R-BJ1-atl-c-05-0-UI /FEA=EST /CNT=6 /TID=Rn.33478.1 /TIER=Stack /STK=6 /UG=Rn.33478 /UG_TITLE=ESTs BE099881 1375078_at BF404061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404061 /DB_XREF=gi:11392036 /DB_XREF=UI-R-CA1-biw-b-07-0-UI.s1 /CLONE=UI-R-CA1-biw-b-07-0-UI /FEA=EST /CNT=6 /TID=Rn.61642.1 /TIER=Stack /STK=6 /UG=Rn.61642 /UG_TITLE=ESTs BF404061 1375079_at BE115776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115776 /DB_XREF=gi:8507881 /DB_XREF=UI-R-CA0-axs-g-03-0-UI.s1 /CLONE=UI-R-CA0-axs-g-03-0-UI /FEA=EST /CNT=6 /TID=Rn.51492.1 /TIER=Stack /STK=6 /UG=Rn.51492 /UG_TITLE=ESTs, Weakly similar to S21976 probable RNA-directed DNA polymerase (R.norvegicus) BE115776 1375080_at BF392317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392317 /DB_XREF=gi:11377174 /DB_XREF=UI-R-CA0-bfn-f-07-0-UI.s1 /CLONE=UI-R-CA0-bfn-f-07-0-UI /FEA=EST /CNT=6 /TID=Rn.53414.1 /TIER=Stack /STK=6 /UG=Rn.53414 /UG_TITLE=ESTs BF392317 solute carrier family 25, member 45 Slc25a45 689625 XM_001071416 /// XM_002725777 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1375081_at AA819763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819763 /DB_XREF=gi:2889758 /DB_XREF=UI-R-A0-av-h-02-0-UI.s1 /CLONE=UI-R-A0-av-h-02-0-UI /FEA=EST /CNT=6 /TID=Rn.2189.1 /TIER=Stack /STK=6 /UG=Rn.2189 /UG_TITLE=ESTs AA819763 5',3'-nucleotidase, mitochondrial Nt5m 287368 NM_001105785 0016311 // dephosphorylation // not recorded /// 0046079 // dUMP catabolic process // not recorded 0005739 // mitochondrion // not recorded 0008253 // 5'-nucleotidase activity // not recorded /// 0016791 // phosphatase activity // inferred from electronic annotation 1375082_at BF410005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410005 /DB_XREF=gi:11397980 /DB_XREF=UI-R-CA0-bjs-d-05-0-UI.s1 /CLONE=UI-R-CA0-bjs-d-05-0-UI /FEA=EST /CNT=6 /TID=Rn.63162.1 /TIER=Stack /STK=6 /UG=Rn.63162 /UG_TITLE=ESTs BF410005 1375083_at BM387126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387126 /DB_XREF=gi:18187179 /DB_XREF=UI-R-CN1-cji-b-17-0-UI.s1 /CLONE=UI-R-CN1-cji-b-17-0-UI /FEA=EST /CNT=6 /TID=Rn.42082.1 /TIER=Stack /STK=6 /UG=Rn.42082 /UG_TITLE=ESTs BM387126 1375084_at BF419780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419780 /DB_XREF=gi:11407769 /DB_XREF=UI-R-CA0-bpg-b-07-0-UI.s1 /CLONE=UI-R-CA0-bpg-b-07-0-UI /FEA=EST /CNT=6 /TID=Rn.48374.1 /TIER=Stack /STK=6 /UG=Rn.48374 /UG_TITLE=ESTs BF419780 serine incorporator 2 Serinc2 313057 NM_001031656 0006658 // phosphatidylserine metabolic process // inferred from direct assay /// 0006665 // sphingolipid metabolic process // inferred from sequence or structural similarity /// 0015825 // L-serine transport // inferred from sequence or structural similarity /// 0051347 // positive regulation of transferase activity // inferred from direct assay 0005789 // endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation 0015194 // L-serine transmembrane transporter activity // inferred from sequence or structural similarity 1375085_at BE112659 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112659 /DB_XREF=gi:8504764 /DB_XREF=UI-R-BJ1-avj-c-06-0-UI.s1 /CLONE=UI-R-BJ1-avj-c-06-0-UI /FEA=EST /CNT=6 /TID=Rn.52091.1 /TIER=Stack /STK=6 /UG=Rn.52091 /UG_TITLE=ESTs BE112659 solute carrier family 25, member 35 Slc25a35 497933 NM_001109033 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1375086_at BF393881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393881 /DB_XREF=gi:11378744 /DB_XREF=UI-R-CA0-bgw-b-01-0-UI.s1 /CLONE=UI-R-CA0-bgw-b-01-0-UI /FEA=EST /CNT=6 /TID=Rn.58155.1 /TIER=Stack /STK=6 /UG=Rn.58155 /UG_TITLE=ESTs BF393881 1375087_at BF398862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398862 /DB_XREF=gi:11383864 /DB_XREF=UI-R-CA1-bja-a-09-0-UI.s1 /CLONE=UI-R-CA1-bja-a-09-0-UI /FEA=EST /CNT=6 /TID=Rn.57760.1 /TIER=Stack /STK=6 /UG=Rn.57760 /UG_TITLE=ESTs, Moderately similar to THTM RAT 3-MERCAPTOPYRUVATE SULFURTRANSFERASE (R.norvegicus) BF398862 1375088_at BF404846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404846 /DB_XREF=gi:11392821 /DB_XREF=UI-R-CA1-bic-d-06-0-UI.s1 /CLONE=UI-R-CA1-bic-d-06-0-UI /FEA=EST /CNT=6 /TID=Rn.60599.1 /TIER=Stack /STK=6 /UG=Rn.60599 /UG_TITLE=ESTs BF404846 1375089_at BF411781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411781 /DB_XREF=gi:11399770 /DB_XREF=UI-R-BT1-bmw-a-11-0-UI.s1 /CLONE=UI-R-BT1-bmw-a-11-0-UI /FEA=EST /CNT=6 /TID=Rn.44931.1 /TIER=Stack /STK=6 /UG=Rn.44931 /UG_TITLE=ESTs, Weakly similar to T34178 hypothetical protein C49H3.6 - Caenorhabditis elegans (C.elegans) BF411781 filamin A interacting protein 1 Filip1 246776 NM_145682 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 1375090_at AI579005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI579005 /DB_XREF=gi:4563381 /DB_XREF=UI-R-AA0-wk-g-10-0-UI.s1 /CLONE=UI-R-AA0-wk-g-10-0-UI /FEA=EST /CNT=6 /TID=Rn.14814.1 /TIER=Stack /STK=6 /UG=Rn.14814 /UG_TITLE=ESTs AI579005 1375091_at BE111801 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111801 /DB_XREF=gi:8503906 /DB_XREF=UI-R-BJ1-avx-h-12-0-UI.s1 /CLONE=UI-R-BJ1-avx-h-12-0-UI /FEA=EST /CNT=6 /TID=Rn.21821.1 /TIER=Stack /STK=6 /UG=Rn.21821 /UG_TITLE=ESTs BE111801 centrosomal protein 164kDa Cep164 363055 XM_001064241 /// XM_343383 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375092_at AW252664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252664 /DB_XREF=gi:6596255 /DB_XREF=UI-R-BJ0-aeb-b-08-0-UI.s1 /CLONE=UI-R-BJ0-aeb-b-08-0-UI /FEA=EST /CNT=6 /TID=Rn.20687.1 /TIER=Stack /STK=6 /UG=Rn.20687 /UG_TITLE=ESTs AW252664 1375093_at AI236089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236089 /DB_XREF=gi:3829595 /DB_XREF=EST232651 /CLONE=ROVDB29 /FEA=EST /CNT=6 /TID=Rn.25478.1 /TIER=Stack /STK=6 /UG=Rn.25478 /UG_TITLE=ESTs, Weakly similar to T13380 ribokinase homolog - fruit fly (D.melanogaster) AI236089 ribokinase Rbks 362706 NM_001108703 0006014 // D-ribose metabolic process // inferred from electronic annotation 0004747 // ribokinase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1375094_at BF406208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406208 /DB_XREF=gi:11394178 /DB_XREF=UI-R-CA1-bjf-c-12-0-UI.s1 /CLONE=UI-R-CA1-bjf-c-12-0-UI /FEA=EST /CNT=6 /TID=Rn.7085.2 /TIER=Stack /STK=6 /UG=Rn.7085 /LL=24560 /UG_GENE=Mox2 /UG_TITLE=Cell surface protein (thymocyte, antigen identified by monoclonal antibody MRC-OX2 BF406208 Cd200 molecule Cd200 24560 NM_031518 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction 1375095_at BF394091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394091 /DB_XREF=gi:11378950 /DB_XREF=UI-R-CA0-bgz-a-02-0-UI.s1 /CLONE=UI-R-CA0-bgz-a-02-0-UI /FEA=EST /CNT=6 /TID=Rn.52404.1 /TIER=Stack /STK=6 /UG=Rn.52404 /UG_TITLE=ESTs BF394091 1375096_at BF418337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418337 /DB_XREF=gi:11406326 /DB_XREF=UI-R-CA0-bmd-h-06-0-UI.s1 /CLONE=UI-R-CA0-bmd-h-06-0-UI /FEA=EST /CNT=6 /TID=Rn.52366.1 /TIER=Stack /STK=6 /UG=Rn.52366 /UG_TITLE=ESTs BF418337 stratifin Sfn 313017 XM_001065560 /// XM_232745 0000079 // regulation of cyclin-dependent protein kinase activity // not recorded /// 0001836 // release of cytochrome c from mitochondria // not recorded /// 0006915 // apoptosis // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008630 // DNA damage response, signal transduction resulting in induction of apoptosis // not recorded /// 0030216 // keratinocyte differentiation // not recorded /// 0030307 // positive regulation of cell growth // not recorded /// 0043154 // negative regulation of caspase activity // not recorded /// 0043588 // skin development // not recorded /// 0043616 // keratinocyte proliferation // not recorded /// 0051726 // regulation of cell cycle // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation 1375097_at BF393127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393127 /DB_XREF=gi:11377987 /DB_XREF=UI-R-CA0-bfp-a-11-0-UI.s1 /CLONE=UI-R-CA0-bfp-a-11-0-UI /FEA=EST /CNT=6 /TID=Rn.57744.1 /TIER=Stack /STK=6 /UG=Rn.57744 /UG_TITLE=ESTs BF393127 1375098_at BI280571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280571 /DB_XREF=gi:14929488 /DB_XREF=UI-R-DC0-bzm-a-09-0-UI.s1 /CLONE=UI-R-DC0-bzm-a-09-0-UI /FEA=EST /CNT=6 /TID=Rn.78071.1 /TIER=Stack /STK=6 /UG=Rn.78071 /UG_TITLE=ESTs BI280571 prostate and testis expressed 4 Pate4 363041 NM_001108757 0009611 // response to wounding // not recorded /// 0050804 // regulation of synaptic transmission // not recorded 1375099_at BF415478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415478 /DB_XREF=gi:11403467 /DB_XREF=UI-R-CA1-bjz-d-04-0-UI.s1 /CLONE=UI-R-CA1-bjz-d-04-0-UI /FEA=EST /CNT=6 /TID=Rn.56268.1 /TIER=Stack /STK=6 /UG=Rn.56268 /UG_TITLE=ESTs BF415478 1375100_at BF400662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400662 /DB_XREF=gi:11388637 /DB_XREF=UI-R-CA0-bhe-a-06-0-UI.s1 /CLONE=UI-R-CA0-bhe-a-06-0-UI /FEA=EST /CNT=6 /TID=Rn.51883.1 /TIER=Stack /STK=6 /UG=Rn.51883 /UG_TITLE=ESTs, Weakly similar to UBP4 MOUSE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4 (M.musculus) BF400662 gametogenetin-binding protein 1 Ggnbp1 494520 NM_001009972 0000266 // mitochondrial fission // not recorded /// 0000266 // mitochondrial fission // inferred from sequence or structural similarity /// 0000266 // mitochondrial fission // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // not recorded /// 0005758 // mitochondrial intermembrane space // inferred from sequence or structural similarity /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375101_at BI292651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292651 /DB_XREF=gi:14953369 /DB_XREF=UI-R-DO0-ciw-j-07-0-UI.s1 /CLONE=UI-R-DO0-ciw-j-07-0-UI /FEA=EST /CNT=6 /TID=Rn.79335.1 /TIER=Stack /STK=6 /UG=Rn.79335 /UG_TITLE=ESTs BI292651 1375102_at BF396123 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396123 /DB_XREF=gi:11381095 /DB_XREF=UI-R-CA1-bcb-f-01-0-UI.s1 /CLONE=UI-R-CA1-bcb-f-01-0-UI /FEA=EST /CNT=6 /TID=Rn.60791.1 /TIER=Stack /STK=6 /UG=Rn.60791 /UG_TITLE=ESTs BF396123 1375103_at BF409504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409504 /DB_XREF=gi:11397479 /DB_XREF=UI-R-CA1-blj-h-11-0-UI.s1 /CLONE=UI-R-CA1-blj-h-11-0-UI /FEA=EST /CNT=6 /TID=Rn.61425.1 /TIER=Stack /STK=6 /UG=Rn.61425 /UG_TITLE=ESTs, Highly similar to G11_HUMAN G11 PROTEIN {SUB 111-368 (H.sapiens) BF409504 1375104_at AI408517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408517 /DB_XREF=gi:4252021 /DB_XREF=EST236807 /CLONE=ROVEQ10 /FEA=EST /CNT=96 /TID=Rn.2773.1 /TIER=ConsEnd /STK=0 /UG=Rn.2773 /UG_TITLE=ESTs, Highly similar to JC4871 phospholipase C (M.musculus) AI408517 Protein phosphatase 1, regulatory (inhibitor) subunit 14B Ppp1r14b 259225 NM_172045 0042325 // regulation of phosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008599 // protein phosphatase type 1 regulator activity // inferred from direct assay /// 0019212 // phosphatase inhibitor activity // inferred from direct assay 1375105_at BF419036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419036 /DB_XREF=gi:11407025 /DB_XREF=UI-R-BJ2-bqm-g-11-0-UI.s1 /CLONE=UI-R-BJ2-bqm-g-11-0-UI /FEA=EST /CNT=107 /TID=Rn.24294.1 /TIER=Stack /STK=106 /UG=Rn.24294 /UG_TITLE=ESTs BF419036 Apoptosis, caspase activation inhibitor Aven 311299 NM_001107757 0006916 // anti-apoptosis // not recorded 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // not recorded 0005515 // protein binding // not recorded 1375106_at AI103368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103368 /DB_XREF=gi:4134163 /DB_XREF=EST212657 /CLONE=REMCB16 /FEA=EST /CNT=76 /TID=Rn.6910.1 /TIER=Stack /STK=69 /UG=Rn.6910 /UG_TITLE=ESTs AI103368 amnionless homolog (mouse) Amn 314459 NM_001108061 0007588 // excretion // not recorded /// 0008104 // protein localization // not recorded 0045177 // apical part of cell // not recorded 1375107_at AI170758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170758 /DB_XREF=gi:3710798 /DB_XREF=EST216697 /CLONE=RMUBB13 /FEA=EST /CNT=451 /TID=Rn.3979.4 /TIER=Stack /STK=66 /UG=Rn.3979 /LL=114106 /UG_GENE=Bcdo /UG_TITLE=beta-carotene 15, 15-dioxygenase AI170758 COXII COX2 26198 0006810 // transport // inferred from electronic annotation /// 0007595 // lactation // inferred from expression pattern /// 0009409 // response to cold // inferred from expression pattern /// 0022900 // electron transport chain // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375108_at AI008105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008105 /DB_XREF=gi:4132856 /DB_XREF=EST202556 /CLONE=REMAS96 /FEA=EST /CNT=76 /TID=Rn.43378.1 /TIER=Stack /STK=56 /UG=Rn.43378 /UG_TITLE=ESTs, Moderately similar to 0806162H protein URF3 (M.musculus) AI008105 NADH dehydrogenase subunit 3 ND3 26199 0006123 // mitochondrial electron transport, cytochrome c to oxygen // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from direct assay /// 0009642 // response to light intensity // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from mutant phenotype /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // inferred from electronic annotation /// 0055093 // response to hyperoxia // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from electronic annotation /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation 1375109_at BI296722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296722 /DB_XREF=gi:14961433 /DB_XREF=UI-R-CV2-cgv-e-10-0-UI.s1 /CLONE=UI-R-CV2-cgv-e-10-0-UI /FEA=EST /CNT=46 /TID=Rn.73201.1 /TIER=Stack /STK=46 /UG=Rn.73201 /UG_TITLE=ESTs BI296722 1375110_at AI102021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102021 /DB_XREF=gi:3706856 /DB_XREF=EST211310 /CLONE=RBRBY05 /FEA=EST /CNT=45 /TID=Rn.6994.2 /TIER=Stack /STK=40 /UG=Rn.6994 /UG_TITLE=ESTs, Weakly similar to splicing factor, arginineserine-rich (transformer 2 Drosophila homolog) 10 (Rattus norvegicus) (R.norvegicus) AI102021 THO complex 4 Thoc4 690585 NM_001109602 0006406 // mRNA export from nucleus // not recorded /// 0008380 // RNA splicing // not recorded /// 0046784 // intronless viral mRNA export from host nucleus // not recorded 0000346 // transcription export complex // not recorded /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // not recorded /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // not recorded 1375111_at BI291346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291346 /DB_XREF=gi:14950810 /DB_XREF=UI-R-CV2-cgp-a-10-0-UI.s1 /CLONE=UI-R-CV2-cgp-a-10-0-UI /FEA=EST /CNT=39 /TID=Rn.67023.1 /TIER=Stack /STK=39 /UG=Rn.67023 /UG_TITLE=ESTs BI291346 1375112_at BE112408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112408 /DB_XREF=gi:8504513 /DB_XREF=UI-R-BJ1-avm-c-10-0-UI.s1 /CLONE=UI-R-BJ1-avm-c-10-0-UI /FEA=EST /CNT=37 /TID=Rn.25840.2 /TIER=Stack /STK=37 /UG=Rn.25840 /UG_TITLE=Rattus norvegicus ovalbumin upstream promoter gamma nuclear receptor rCOUPg mRNA, complete cds BE112408 Nuclear receptor subfamily 2, group F, member 6 Nr2f6 245980 NM_139113 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0043153 // entrainment of circadian clock by photoperiod // inferred from electronic annotation /// 0043153 // entrainment of circadian clock by photoperiod // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048666 // neuron development // inferred from electronic annotation /// 0048666 // neuron development // not recorded /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // inferred from electronic annotation /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375113_at BF406251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406251 /DB_XREF=gi:11394226 /DB_XREF=UI-R-CA1-bjf-m-04-0-UI.s1 /CLONE=UI-R-CA1-bjf-m-04-0-UI /FEA=EST /CNT=36 /TID=Rn.51320.1 /TIER=Stack /STK=36 /UG=Rn.51320 /UG_TITLE=ESTs, Weakly similar to IGEB MOUSE IGE-BINDING PROTEIN (M.musculus) BF406251 1375114_at AI177011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177011 /DB_XREF=gi:4134945 /DB_XREF=EST220618 /CLONE=ROVBZ71 /FEA=EST /CNT=40 /TID=Rn.3155.1 /TIER=Stack /STK=33 /UG=Rn.3155 /UG_TITLE=ESTs, Highly similar to vascular actin single-stranded DNA-binding factor 2 p44 component (M.musculus) AI177011 Purine rich element binding protein B Purb 498407 NM_001017503 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005662 // DNA replication factor A complex // inferred from sequence or structural similarity 0000900 // translation repressor activity, nucleic acid binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // not recorded /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003697 // single-stranded DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003729 // mRNA binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from sequence or structural similarity /// 0016566 // specific transcriptional repressor activity // inferred from direct assay /// 0032422 // purine-rich negative regulatory element binding // inferred from direct assay /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046332 // SMAD binding // not recorded 1375115_at AI137275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137275 /DB_XREF=gi:3638052 /DB_XREF=UI-R-C2p-ok-g-06-0-UI.s1 /CLONE=UI-R-C2p-ok-g-06-0-UI /FEA=EST /CNT=33 /TID=Rn.13059.1 /TIER=Stack /STK=32 /UG=Rn.13059 /UG_TITLE=ESTs AI137275 Hypothetical LOC290577 LOC290577 290577 XM_002725158 /// XM_002728376 0005488 // binding // inferred from electronic annotation 1375116_at AI548969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548969 /DB_XREF=gi:4466457 /DB_XREF=UI-R-C3-tw-h-09-0-UI.s1 /CLONE=UI-R-C3-tw-h-09-0-UI /FEA=EST /CNT=37 /TID=Rn.37877.1 /TIER=Stack /STK=30 /UG=Rn.37877 /UG_TITLE=ESTs AI548969 1375117_at AI102030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102030 /DB_XREF=gi:3706865 /DB_XREF=EST211319 /CLONE=RBRBY14 /FEA=EST /CNT=38 /TID=Rn.3855.2 /TIER=Stack /STK=30 /UG=Rn.3855 /UG_TITLE=ESTs AI102030 AKT1 substrate 1 (proline-rich) Akt1s1 292887 NM_001106259 0006469 // negative regulation of protein kinase activity // not recorded /// 0032007 // negative regulation of TOR signaling cascade // not recorded /// 0043526 // neuroprotection // not recorded /// 0045792 // negative regulation of cell size // not recorded /// 0045884 // regulation of survival gene product expression // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0031931 // TORC1 complex // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0044445 // cytosolic part // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1375118_at BI296584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296584 /DB_XREF=gi:14961154 /DB_XREF=UI-R-CV2-cgs-h-08-0-UI.s1 /CLONE=UI-R-CV2-cgs-h-08-0-UI /FEA=EST /CNT=30 /TID=Rn.58930.1 /TIER=Stack /STK=30 /UG=Rn.58930 /UG_TITLE=ESTs BI296584 1375119_at BI284798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284798 /DB_XREF=gi:14937799 /DB_XREF=UI-R-CX0s-ccs-c-12-0-UI.s1 /CLONE=UI-R-CX0s-ccs-c-12-0-UI /FEA=EST /CNT=52 /TID=Rn.25115.1 /TIER=Stack /STK=29 /UG=Rn.25115 /UG_TITLE=ESTs, Highly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BI284798 neural precursor cell expressed, developmentally down-regulated 4 Nedd4 25489 NM_012986 0006464 // protein modification process // inferred from electronic annotation /// 0006622 // protein targeting to lysosome // not recorded /// 0006955 // immune response // inferred from expression pattern /// 0007041 // lysosomal transport // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0010766 // negative regulation of sodium ion transport // not recorded /// 0010768 // negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage // not recorded /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0019089 // transmission of virus // not recorded /// 0030948 // negative regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0030948 // negative regulation of vascular endothelial growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0031175 // neuron projection development // not recorded /// 0031623 // receptor internalization // not recorded /// 0032801 // receptor catabolic process // not recorded /// 0034644 // cellular response to UV // not recorded /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0042921 // glucocorticoid receptor signaling pathway // not recorded /// 0044111 // development involved in symbiotic interaction // not recorded /// 0045732 // positive regulation of protein catabolic process // not recorded /// 0046824 // positive regulation of nucleocytoplasmic transport // not recorded /// 0048814 // regulation of dendrite morphogenesis // inferred from direct assay /// 0050847 // progesterone receptor signaling pathway // not recorded /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay 0000151 // ubiquitin ligase complex // not recorded /// 0000785 // chromatin // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005902 // microvillus // inferred from direct assay /// 0005938 // cell cortex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from direct assay /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019871 // sodium channel inhibitor activity // not recorded /// 0019904 // protein domain specific binding // not recorded /// 0031698 // beta-2 adrenergic receptor binding // not recorded /// 0043130 // ubiquitin binding // not recorded /// 0050815 // phosphoserine binding // not recorded /// 0050816 // phosphothreonine binding // not recorded /// 0070063 // RNA polymerase binding // not recorded /// 0070064 // proline-rich region binding // not recorded 1375120_at AI412150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412150 /DB_XREF=gi:4255654 /DB_XREF=EST240444 /CLONE=RKIEG81 /FEA=EST /CNT=35 /TID=Rn.3518.1 /TIER=Stack /STK=28 /UG=Rn.3518 /UG_TITLE=ESTs, Weakly similar to DNA-BINDING PROTEIN INHIBITOR ID-2 (R.norvegicus) AI412150 inhibitor of DNA binding 4 Id4 291023 NM_175582 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0007405 // neuroblast proliferation // inferred from electronic annotation /// 0007405 // neuroblast proliferation // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0021895 // cerebral cortex neuron differentiation // inferred from electronic annotation /// 0021895 // cerebral cortex neuron differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0048712 // negative regulation of astrocyte differentiation // inferred from electronic annotation /// 0048712 // negative regulation of astrocyte differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1375121_at BI301428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301428 /DB_XREF=gi:14977708 /DB_XREF=UI-R-DL0-cio-l-24-0-UI.s1 /CLONE=UI-R-DL0-cio-l-24-0-UI /FEA=EST /CNT=29 /TID=Rn.13235.1 /TIER=Stack /STK=28 /UG=Rn.13235 /UG_TITLE=ESTs BI301428 SMAD family member 6 Smad6 367100 NM_001109002 0001657 // ureteric bud development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006955 // immune response // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007352 // zygotic specification of dorsal/ventral axis // not recorded /// 0010991 // negative regulation of SMAD protein complex assembly // not recorded /// 0030509 // BMP signaling pathway // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0034616 // response to laminar fluid shear stress // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043154 // negative regulation of caspase activity // not recorded /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045750 // positive regulation of S phase of mitotic cell cycle // not recorded /// 0060394 // negative regulation of pathway-restricted SMAD protein phosphorylation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030617 // transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity // not recorded /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0034713 // type I transforming growth factor beta receptor binding // not recorded /// 0070410 // co-SMAD binding // not recorded /// 0070411 // I-SMAD binding // not recorded /// 0070412 // R-SMAD binding // not recorded /// 0070698 // type I activin receptor binding // not recorded 1375122_at AI233235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233235 /DB_XREF=gi:3817115 /DB_XREF=EST229923 /CLONE=RKIDC54 /FEA=EST /CNT=32 /TID=Rn.3414.1 /TIER=Stack /STK=25 /UG=Rn.3414 /UG_TITLE=ESTs AI233235 YY1 associated factor 2 Yaf2 690262 NM_001134871 0016481 // negative regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003713 // transcription coactivator activity // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1375123_at BE115519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115519 /DB_XREF=gi:8507624 /DB_XREF=UI-R-BS1-axw-g-10-0-UI.s1 /CLONE=UI-R-BS1-axw-g-10-0-UI /FEA=EST /CNT=27 /TID=Rn.19655.1 /TIER=Stack /STK=25 /UG=Rn.19655 /UG_TITLE=ESTs BE115519 SRY (sex determining region Y)-box 4 Sox4 364712 XM_001068302 /// XM_344594 0001666 // response to hypoxia // inferred from direct assay /// 0002328 // pro-B cell differentiation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007507 // heart development // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0030217 // T cell differentiation // not recorded /// 0031017 // exocrine pancreas development // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0050821 // protein stabilization // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded 1375124_at AW533917 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533917 /DB_XREF=gi:7176378 /DB_XREF=UI-R-C4-alr-c-02-0-UI.s1 /CLONE=UI-R-C4-alr-c-02-0-UI /FEA=EST /CNT=26 /TID=Rn.23224.1 /TIER=Stack /STK=25 /UG=Rn.23224 /UG_TITLE=ESTs, Weakly similar to T31611 hypothetical protein Y50E8A.g - Caenorhabditis elegans (C.elegans) AW533917 PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae) Pan3 360760 XM_001068449 /// XM_002724789 /// XM_002727930 /// XM_346914 0006468 // protein phosphorylation // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1375125_at AI602300 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602300 /DB_XREF=gi:4611461 /DB_XREF=UI-R-AA0-wn-a-11-0-UI.s1 /CLONE=UI-R-AA0-wn-a-11-0-UI /FEA=EST /CNT=26 /TID=Rn.8426.2 /TIER=Stack /STK=24 /UG=Rn.8426 /LL=94267 /UG_GENE=Nudt4 /UG_TITLE=diphosphoinositol polyphosphate phosphohydolase type II AI602300 Nudix (nucleoside diphosphate linked moiety X)-type motif 4 Nudt4 94267 NM_053598 0030384 // phosphoinositide metabolic process // non-traceable author statement 0005737 // cytoplasm // inferred from electronic annotation 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // not recorded /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // inferred from sequence or structural similarity /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375126_at AW534139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534139 /DB_XREF=gi:7176553 /DB_XREF=UI-R-C4-alp-f-07-0-UI.s1 /CLONE=UI-R-C4-alp-f-07-0-UI /FEA=EST /CNT=25 /TID=Rn.7523.1 /TIER=Stack /STK=24 /UG=Rn.7523 /UG_TITLE=ESTs AW534139 1375127_at BI395849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI395849 /DB_XREF=gi:15091475 /DB_XREF=EST531320 /CLONE=RGIZB68 /FEA=EST /CNT=28 /TID=Rn.11077.2 /TIER=Stack /STK=23 /UG=Rn.11077 /UG_TITLE=Rat CoxVa mRNA for mitochondrial cytochrome c oxidase subunit Va BI395849 Cytochrome c oxidase, subunit Va Cox5a 252934 NM_145783 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from direct assay /// 0004129 // cytochrome-c oxidase activity // traceable author statement /// 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375128_at BE110589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110589 /DB_XREF=gi:8502694 /DB_XREF=UI-R-BJ1-avt-g-04-0-UI.s1 /CLONE=UI-R-BJ1-avt-g-04-0-UI /FEA=EST /CNT=27 /TID=Rn.6864.2 /TIER=Stack /STK=23 /UG=Rn.6864 /UG_TITLE=Rattus norvegicus LYRIC (Lyric), mRNA BE110589 Metadherin Mtdh 170910 NM_133398 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0070830 // tight junction assembly // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from direct assay /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded /// 0046581 // intercellular canaliculus // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051059 // NF-kappaB binding // not recorded /// 0051059 // NF-kappaB binding // inferred from sequence or structural similarity /// 0051059 // NF-kappaB binding // inferred from electronic annotation 1375129_at AA963213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963213 /DB_XREF=gi:4278137 /DB_XREF=UI-R-E1-gj-b-03-0-UI.s1 /CLONE=UI-R-E1-gj-b-03-0-UI /FEA=EST /CNT=25 /TID=Rn.6911.1 /TIER=Stack /STK=23 /UG=Rn.6911 /UG_TITLE=ESTs AA963213 fibroblast growth factor receptor 2 Fgfr2 25022 NM_001109892 /// NM_001109893 /// NM_001109894 /// NM_001109895 /// NM_001109896 /// NM_012712 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001837 // epithelial to mesenchymal transition // inferred from direct assay /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0003148 // outflow tract septum morphogenesis // not recorded /// 0003148 // outflow tract septum morphogenesis // inferred from electronic annotation /// 0003149 // membranous septum morphogenesis // not recorded /// 0003149 // membranous septum morphogenesis // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from mutant phenotype /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0008589 // regulation of smoothened signaling pathway // not recorded /// 0008589 // regulation of smoothened signaling pathway // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009880 // embryonic pattern specification // not recorded /// 0009880 // embryonic pattern specification // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010453 // regulation of cell fate commitment // not recorded /// 0010453 // regulation of cell fate commitment // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // not recorded /// 0016331 // morphogenesis of embryonic epithelium // inferred from electronic annotation /// 0022612 // gland morphogenesis // not recorded /// 0022612 // gland morphogenesis // inferred from electronic annotation /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0030177 // positive regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030282 // bone mineralization // not recorded /// 0030282 // bone mineralization // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030901 // midbrain development // not recorded /// 0030901 // midbrain development // inferred from electronic annotation /// 0030916 // otic vesicle formation // not recorded /// 0030916 // otic vesicle formation // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // not recorded /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0032808 // lacrimal gland development // not recorded /// 0032808 // lacrimal gland development // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035265 // organ growth // not recorded /// 0035265 // organ growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040036 // regulation of fibroblast growth factor receptor signaling pathway // not recorded /// 0040036 // regulation of fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042476 // odontogenesis // not recorded /// 0042476 // odontogenesis // inferred from electronic annotation /// 0045165 // cell fate commitment // not recorded /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0048286 // lung alveolus development // not recorded /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048333 // mesodermal cell differentiation // inferred from expression pattern /// 0048557 // embryonic digestive tract morphogenesis // not recorded /// 0048557 // embryonic digestive tract morphogenesis // inferred from electronic annotation /// 0048562 // embryonic organ morphogenesis // not recorded /// 0048562 // embryonic organ morphogenesis // inferred from electronic annotation /// 0048565 // digestive tract development // not recorded /// 0048565 // digestive tract development // inferred from electronic annotation /// 0048568 // embryonic organ development // not recorded /// 0048568 // embryonic organ development // inferred from electronic annotation /// 0048608 // reproductive structure development // not recorded /// 0048608 // reproductive structure development // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0048730 // epidermis morphogenesis // not recorded /// 0048730 // epidermis morphogenesis // inferred from electronic annotation /// 0048755 // branching morphogenesis of a nerve // not recorded /// 0048755 // branching morphogenesis of a nerve // inferred from electronic annotation /// 0048762 // mesenchymal cell differentiation // not recorded /// 0048762 // mesenchymal cell differentiation // inferred from electronic annotation /// 0050673 // epithelial cell proliferation // not recorded /// 0050673 // epithelial cell proliferation // inferred from electronic annotation /// 0050678 // regulation of epithelial cell proliferation // not recorded /// 0050678 // regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // inferred from direct assay /// 0051150 // regulation of smooth muscle cell differentiation // not recorded /// 0051150 // regulation of smooth muscle cell differentiation // inferred from electronic annotation /// 0051781 // positive regulation of cell division // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0060045 // positive regulation of cardiac muscle cell proliferation // not recorded /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060174 // limb bud formation // not recorded /// 0060174 // limb bud formation // inferred from electronic annotation /// 0060348 // bone development // not recorded /// 0060348 // bone development // inferred from electronic annotation /// 0060349 // bone morphogenesis // not recorded /// 0060349 // bone morphogenesis // inferred from electronic annotation /// 0060442 // branching involved in prostate gland morphogenesis // not recorded /// 0060442 // branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // not recorded /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060449 // bud elongation involved in lung branching // not recorded /// 0060449 // bud elongation involved in lung branching // inferred from electronic annotation /// 0060463 // lung lobe morphogenesis // not recorded /// 0060463 // lung lobe morphogenesis // inferred from electronic annotation /// 0060484 // lung-associated mesenchyme development // not recorded /// 0060484 // lung-associated mesenchyme development // inferred from electronic annotation /// 0060501 // positive regulation of epithelial cell proliferation involved in lung morphogenesis // not recorded /// 0060501 // positive regulation of epithelial cell proliferation involved in lung morphogenesis // inferred from electronic annotation /// 0060512 // prostate gland morphogenesis // not recorded /// 0060512 // prostate gland morphogenesis // inferred from electronic annotation /// 0060523 // prostate epithelial cord elongation // not recorded /// 0060523 // prostate epithelial cord elongation // inferred from electronic annotation /// 0060527 // prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis // not recorded /// 0060527 // prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis // inferred from electronic annotation /// 0060529 // squamous basal epithelial stem cell differentiation involved in prostate gland acinus development // not recorded /// 0060529 // squamous basal epithelial stem cell differentiation involved in prostate gland acinus development // inferred from electronic annotation /// 0060595 // fibroblast growth factor receptor signaling pathway involved in mammary gland specification // not recorded /// 0060595 // fibroblast growth factor receptor signaling pathway involved in mammary gland specification // inferred from electronic annotation /// 0060601 // lateral sprouting from an epithelium // not recorded /// 0060601 // lateral sprouting from an epithelium // inferred from electronic annotation /// 0060615 // mammary gland bud formation // not recorded /// 0060615 // mammary gland bud formation // inferred from electronic annotation /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // not recorded /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060667 // branch elongation involved in salivary gland morphogenesis // not recorded /// 0060667 // branch elongation involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060670 // branching involved in embryonic placenta morphogenesis // not recorded /// 0060670 // branching involved in embryonic placenta morphogenesis // inferred from electronic annotation /// 0060687 // regulation of branching involved in prostate gland morphogenesis // not recorded /// 0060687 // regulation of branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0060688 // regulation of morphogenesis of a branching structure // not recorded /// 0060688 // regulation of morphogenesis of a branching structure // inferred from electronic annotation /// 0060915 // mesenchymal cell differentiation involved in lung development // not recorded /// 0060915 // mesenchymal cell differentiation involved in lung development // inferred from electronic annotation /// 0060916 // mesenchymal cell proliferation involved in lung development // not recorded /// 0060916 // mesenchymal cell proliferation involved in lung development // inferred from electronic annotation /// 0070372 // regulation of ERK1 and ERK2 cascade // not recorded /// 0070372 // regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0071445 // cellular response to protein stimulus // not recorded /// 0071445 // cellular response to protein stimulus // inferred from electronic annotation /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0005938 // cell cortex // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005007 // fibroblast growth factor receptor activity // inferred from electronic annotation /// 0005007 // fibroblast growth factor receptor activity // inferred from physical interaction /// 0005007 // fibroblast growth factor receptor activity // not recorded /// 0005007 // fibroblast growth factor receptor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // inferred from physical interaction /// 0017134 // fibroblast growth factor binding // not recorded /// 0017134 // fibroblast growth factor binding // inferred from electronic annotation /// 0048602 // fibroblast growth factor 1 binding // inferred from physical interaction 1375130_at AI410230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410230 /DB_XREF=gi:4253734 /DB_XREF=EST238523 /CLONE=RKIDY41 /FEA=EST /CNT=25 /TID=Rn.20625.1 /TIER=Stack /STK=23 /UG=Rn.20625 /UG_TITLE=ESTs AI410230 Hypothetical protein LOC679612 LOC679612 679612 XM_001053736 1375131_at BF284715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284715 /DB_XREF=gi:11215785 /DB_XREF=EST449306 /CLONE=RGIEV30 /FEA=EST /CNT=25 /TID=Rn.4182.1 /TIER=Stack /STK=23 /UG=Rn.4182 /UG_TITLE=ESTs, Highly similar to AF176009 1 mitochondrial carrier homolog 2 (M.musculus) BF284715 mitochondrial carrier homolog 2 (C. elegans) Mtch2 295922 NM_001106488 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1375132_at BG373030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373030 /DB_XREF=gi:13269567 /DB_XREF=UI-R-CV1-bsb-g-02-0-UI.s1 /CLONE=UI-R-CV1-bsb-g-02-0-UI /FEA=EST /CNT=24 /TID=Rn.19695.1 /TIER=Stack /STK=23 /UG=Rn.19695 /UG_TITLE=ESTs, Weakly similar to Ars component B (Mus musculus) (M.musculus) BG373030 Ly6/Plaur domain containing 2 Lypd2 300017 NM_001130545 1375133_at AW253950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253950 /DB_XREF=gi:6597541 /DB_XREF=UI-R-BJ0-aed-c-07-0-UI.s1 /CLONE=UI-R-BJ0-aed-c-07-0-UI /FEA=EST /CNT=23 /TID=Rn.23193.2 /TIER=Stack /STK=23 /UG=Rn.23193 /UG_TITLE=ESTs AW253950 Scavenger receptor class F, member 2 Scarf2 287949 NM_001105864 0007157 // heterophilic cell-cell adhesion // not recorded /// 0007165 // signal transduction // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005044 // scavenger receptor activity // not recorded /// 0005515 // protein binding // not recorded 1375134_at AI603162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI603162 /DB_XREF=gi:4612323 /DB_XREF=UI-R-AE0-xg-f-11-0-UI.s1 /CLONE=UI-R-AE0-xg-f-11-0-UI /FEA=EST /CNT=27 /TID=Rn.8400.4 /TIER=Stack /STK=22 /UG=Rn.8400 /LL=65139 /UG_GENE=Rps12 /UG_TITLE=ribosomal protein S12 AI603162 DET1 and DDB1 associated 1 Dda1 688813 NM_001134790 1375135_at BE111669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111669 /DB_XREF=gi:8503774 /DB_XREF=UI-R-BJ1-avv-d-11-0-UI.s1 /CLONE=UI-R-BJ1-avv-d-11-0-UI /FEA=EST /CNT=32 /TID=Rn.28188.1 /TIER=Stack /STK=22 /UG=Rn.28188 /UG_TITLE=ESTs, Weakly similar to HsGCN1 (H.sapiens) BE111669 GCN1 general control of amino-acid synthesis 1-like 1 (yeast) Gcn1l1 690632 NM_001168664 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375136_at AA946053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946053 /DB_XREF=gi:4132677 /DB_XREF=EST201552 /CLONE=RLUBA63 /FEA=EST /CNT=25 /TID=Rn.4332.2 /TIER=Stack /STK=22 /UG=Rn.4332 /UG_TITLE=ESTs AA946053 1375137_at AI070323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070323 /DB_XREF=gi:3396574 /DB_XREF=UI-R-Y0-lv-a-03-0-UI.s1 /CLONE=UI-R-Y0-lv-a-03-0-UI /FEA=EST /CNT=27 /TID=Rn.7952.2 /TIER=Stack /STK=22 /UG=Rn.7952 /UG_TITLE=ESTs, Highly similar to AR34_HUMAN ARP23 COMPLEX 34 KD SUBUNIT (H.sapiens) AI070323 actin related protein 2/3 complex, subunit 2 Arpc2 301511 NM_001106919 0030833 // regulation of actin filament polymerization // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0031252 // cell leading edge // inferred from electronic annotation /// 0031252 // cell leading edge // not recorded /// 0042995 // cell projection // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375138_at AA893169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893169 /DB_XREF=gi:4132254 /DB_XREF=EST196972 /CLONE=RKIBD07 /FEA=EST /CNT=24 /TID=Rn.3467.3 /TIER=Stack /STK=22 /UG=Rn.3467 /LL=25358 /UG_GENE=Timp3 /UG_TITLE=Tissue inhibitor of metalloproteinase 3 AA893169 TIMP metallopeptidase inhibitor 3 Timp3 25358 NM_012886 0006917 // induction of apoptosis // traceable author statement /// 0007417 // central nervous system development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0042246 // tissue regeneration // inferred from expression pattern /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045861 // negative regulation of proteolysis // inferred from mutant phenotype /// 0051045 // negative regulation of membrane protein ectodomain proteolysis // inferred from electronic annotation /// 0051045 // negative regulation of membrane protein ectodomain proteolysis // not recorded /// 0051593 // response to folic acid // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0031012 // extracellular matrix // not recorded 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008191 // metalloendopeptidase inhibitor activity // traceable author statement /// 0008191 // metalloendopeptidase inhibitor activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375139_at BF406295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406295 /DB_XREF=gi:11394270 /DB_XREF=UI-R-CA1-bjf-f-07-0-UI.s1 /CLONE=UI-R-CA1-bjf-f-07-0-UI /FEA=EST /CNT=23 /TID=Rn.53219.1 /TIER=Stack /STK=22 /UG=Rn.53219 /UG_TITLE=ESTs BF406295 1375140_at AA818999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818999 /DB_XREF=gi:4227664 /DB_XREF=UI-R-A0-ao-f-09-0-UI.s1 /CLONE=UI-R-A0-ao-f-09-0-UI /FEA=EST /CNT=23 /TID=Rn.7520.1 /TIER=Stack /STK=22 /UG=Rn.7520 /UG_TITLE=ESTs, Moderately similar to MBNL_MOUSE Muscleblind-like protein (Triplet-expansion RNA-binding protein) (M.musculus) AA818999 muscleblind-like 2 Mbnl2 680445 NM_001111064 0000381 // regulation of alternative nuclear mRNA splicing, via spliceosome // inferred from electronic annotation /// 0006376 // mRNA splice site selection // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0043484 // regulation of RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0010494 // stress granule // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1375141_at AI574962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI574962 /DB_XREF=gi:4544958 /DB_XREF=UI-R-G0-ug-c-11-0-UI.s1 /CLONE=UI-R-G0-ug-c-11-0-UI /FEA=EST /CNT=22 /TID=Rn.38663.1 /TIER=Stack /STK=22 /UG=Rn.38663 /UG_TITLE=ESTs, Weakly similar to HK25 RAT HOMEOBOX PROTEIN NKX-2.5 (R.norvegicus) AI574962 T-cell leukemia, homeobox 3 Tlx3 497881 XM_001064411 /// XM_573065 0001708 // cell fate specification // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0002087 // regulation of respiratory gaseous exchange by neurological system process // inferred from electronic annotation /// 0002087 // regulation of respiratory gaseous exchange by neurological system process // not recorded /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // not recorded /// 0030182 // neuron differentiation // not recorded /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0048665 // neuron fate specification // inferred from electronic annotation /// 0048665 // neuron fate specification // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375142_at BI291337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291337 /DB_XREF=gi:14950782 /DB_XREF=UI-R-CV2-cgo-g-04-0-UI.s1 /CLONE=UI-R-CV2-cgo-g-04-0-UI /FEA=EST /CNT=22 /TID=Rn.9940.4 /TIER=Stack /STK=22 /UG=Rn.9940 /LL=117556 /UG_GENE=Sv2b /UG_TITLE=synaptic vesicle glycoprotein 2 b BI291337 Synaptic vesicle glycoprotein 2b Sv2b 117556 NM_057207 0001504 // neurotransmitter uptake // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0008021 // synaptic vesicle // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375143_at AI576452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576452 /DB_XREF=gi:4560828 /DB_XREF=UI-R-G0-us-a-11-0-UI.s1 /CLONE=UI-R-G0-us-a-11-0-UI /FEA=EST /CNT=29 /TID=Rn.37779.2 /TIER=Stack /STK=21 /UG=Rn.37779 /LL=64160 /UG_GENE=Basp1 /UG_TITLE=brain acidic membrane protein AI576452 Brain abundant, membrane attached signal protein 1 Basp1 64160 NM_022300 0032582 // negative regulation of gene-specific transcription // not recorded /// 0032582 // negative regulation of gene-specific transcription // inferred from sequence or structural similarity /// 0072112 // glomerular visceral epithelial cell differentiation // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded /// 0016607 // nuclear speck // inferred from sequence or structural similarity /// 0016607 // nuclear speck // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0003714 // transcription corepressor activity // not recorded /// 0003714 // transcription corepressor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from sequence or structural similarity /// 0010843 // promoter binding // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // not recorded /// 0016566 // specific transcriptional repressor activity // inferred from sequence or structural similarity /// 0019904 // protein domain specific binding // not recorded 1375144_at BM388843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388843 /DB_XREF=gi:18188896 /DB_XREF=UI-R-DZ0-ckn-e-20-0-UI.s1 /CLONE=UI-R-DZ0-ckn-e-20-0-UI /FEA=EST /CNT=29 /TID=Rn.843.1 /TIER=Stack /STK=21 /UG=Rn.843 /UG_TITLE=ESTs BM388843 1375145_at AI548036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548036 /DB_XREF=gi:4465524 /DB_XREF=UI-R-C3-tc-g-06-0-UI.s1 /CLONE=UI-R-C3-tc-g-06-0-UI /FEA=EST /CNT=24 /TID=Rn.7445.1 /TIER=Stack /STK=21 /UG=Rn.7445 /UG_TITLE=ESTs AI548036 ring finger and WD repeat domain 2 LOC100360800 100360800 XM_002728026 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375146_at BI282168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282168 /DB_XREF=gi:14932651 /DB_XREF=UI-R-CU0s-cbx-d-07-0-UI.s1 /CLONE=UI-R-CU0s-cbx-d-07-0-UI /FEA=EST /CNT=23 /TID=Rn.7104.1 /TIER=Stack /STK=21 /UG=Rn.7104 /UG_TITLE=ESTs, Moderately similar to T43493 hypothetical protein DKFZp434C119.1 (H.sapiens) BI282168 solute carrier family 25, member 39 Slc25a39 360636 NM_001024792 0006783 // heme biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1375147_at AI175740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175740 /DB_XREF=gi:4134814 /DB_XREF=EST219306 /CLONE=ROVBE63 /FEA=EST /CNT=22 /TID=Rn.22228.1 /TIER=Stack /STK=21 /UG=Rn.22228 /UG_TITLE=ESTs AI175740 1375148_at AW252880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252880 /DB_XREF=gi:6596471 /DB_XREF=UI-R-BJ0-ael-g-08-0-UI.s1 /CLONE=UI-R-BJ0-ael-g-08-0-UI /FEA=EST /CNT=22 /TID=Rn.13376.1 /TIER=Stack /STK=21 /UG=Rn.13376 /UG_TITLE=ESTs, Weakly similar to T18297 zinc-finger protein FOG-2 - mouse (M.musculus) AW252880 zinc finger protein, multitype 1-like LOC100365064 100365064 XM_002725423 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1375149_at AI145991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145991 /DB_XREF=gi:3667790 /DB_XREF=UI-R-BT0-pz-a-09-0-UI.s1 /CLONE=UI-R-BT0-pz-a-09-0-UI /FEA=EST /CNT=22 /TID=Rn.22207.1 /TIER=Stack /STK=21 /UG=Rn.22207 /UG_TITLE=ESTs, Highly similar to T46266 hypothetical protein DKFZp761A179.1 (H.sapiens) AI145991 leucine rich repeat containing 4B Lrrc4b 308571 XM_001077685 /// XM_218615 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1375150_at AA848494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848494 /DB_XREF=gi:2936034 /DB_XREF=EST191254 /CLONE=RKIAC66 /FEA=EST /CNT=25 /TID=Rn.3913.1 /TIER=Stack /STK=20 /UG=Rn.3913 /UG_TITLE=ESTs, Moderately similar to NNX3 (M.musculus) AA848494 Similar to NNX3 RGD1310358 308537 NM_001107507 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006457 // protein folding // inferred from electronic annotation /// 0009615 // response to virus // not recorded 0005665 // DNA-directed RNA polymerase II, core complex // not recorded /// 0016272 // prefoldin complex // inferred from electronic annotation 0003714 // transcription corepressor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1375151_at BF284007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284007 /DB_XREF=gi:11215077 /DB_XREF=EST448598 /CLONE=RGIEJ80 /FEA=EST /CNT=23 /TID=Rn.8473.1 /TIER=Stack /STK=20 /UG=Rn.8473 /UG_TITLE=ESTs, Weakly similar to RAPA_HUMAN RAS-RELATED PROTEIN RAP-1A (R.norvegicus) BF284007 Similar to RAP2A, member of RAS oncogene family RGD1565168 366733 XM_001071789 /// XM_345725 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1375152_at AI548389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548389 /DB_XREF=gi:4465877 /DB_XREF=UI-R-C3-te-c-05-0-UI.s1 /CLONE=UI-R-C3-te-c-05-0-UI /FEA=EST /CNT=21 /TID=Rn.25037.1 /TIER=Stack /STK=20 /UG=Rn.25037 /UG_TITLE=ESTs AI548389 1375153_at AI111954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111954 /DB_XREF=gi:3511903 /DB_XREF=UI-R-Y0-mo-a-11-0-UI.s1 /CLONE=UI-R-Y0-mo-a-11-0-UI /FEA=EST /CNT=21 /TID=Rn.17369.1 /TIER=Stack /STK=20 /UG=Rn.17369 /UG_TITLE=ESTs AI111954 SRY (sex determining region Y)-box 2 Sox2 499593 NM_001109181 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001649 // osteoblast differentiation // not recorded /// 0001654 // eye development // not recorded /// 0001708 // cell fate specification // not recorded /// 0002052 // positive regulation of neuroblast proliferation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0009611 // response to wounding // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0019827 // stem cell maintenance // not recorded /// 0021879 // forebrain neuron differentiation // not recorded /// 0021983 // pituitary gland development // not recorded /// 0021984 // adenohypophysis development // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030539 // male genitalia development // not recorded /// 0030858 // positive regulation of epithelial cell differentiation // not recorded /// 0030900 // forebrain development // not recorded /// 0030910 // olfactory placode formation // not recorded /// 0032526 // response to retinoic acid // not recorded /// 0035019 // somatic stem cell maintenance // not recorded /// 0042221 // response to chemical stimulus // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0043281 // regulation of caspase activity // not recorded /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0043586 // tongue development // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045668 // negative regulation of osteoblast differentiation // not recorded /// 0045747 // positive regulation of Notch signaling pathway // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046148 // pigment biosynthetic process // not recorded /// 0048286 // lung alveolus development // not recorded /// 0048568 // embryonic organ development // not recorded /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded /// 0048663 // neuron fate commitment // not recorded /// 0048839 // inner ear development // not recorded /// 0048852 // diencephalon morphogenesis // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // not recorded /// 0050973 // detection of mechanical stimulus involved in equilibrioception // not recorded /// 0060042 // retina morphogenesis in camera-type eye // not recorded /// 0060235 // lens induction in camera-type eye // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // not recorded /// 0070848 // response to growth factor stimulus // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0035198 // miRNA binding // not recorded /// 0043565 // sequence-specific DNA binding // not recorded 1375154_at BI291268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291268 /DB_XREF=gi:14950651 /DB_XREF=UI-R-CV2-cgn-e-07-0-UI.s1 /CLONE=UI-R-CV2-cgn-e-07-0-UI /FEA=EST /CNT=20 /TID=Rn.73206.1 /TIER=Stack /STK=20 /UG=Rn.73206 /UG_TITLE=ESTs BI291268 1375155_at BF409816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409816 /DB_XREF=gi:11397791 /DB_XREF=UI-R-CA1-bjr-b-06-0-UI.s1 /CLONE=UI-R-CA1-bjr-b-06-0-UI /FEA=EST /CNT=20 /TID=Rn.62892.1 /TIER=Stack /STK=20 /UG=Rn.62892 /UG_TITLE=ESTs BF409816 1375156_at AI599528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599528 /DB_XREF=gi:4608576 /DB_XREF=EST251231 /CLONE=REMEO68 /FEA=EST /CNT=22 /TID=Rn.8683.1 /TIER=Stack /STK=19 /UG=Rn.8683 /UG_TITLE=ESTs, Moderately similar to IQG1_MOUSE Ras GTPase-activating-like protein IQGAP1 (M.musculus) AI599528 1375157_at AA943117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943117 /DB_XREF=gi:3103033 /DB_XREF=EST198616 /CLONE=RBRAF28 /FEA=EST /CNT=20 /TID=Rn.7419.1 /TIER=Stack /STK=19 /UG=Rn.7419 /UG_TITLE=ESTs, Moderately similar to T43468 hypothetical protein DKFZp434K0227.1 (H.sapiens) AA943117 Myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 Mllt6 303504 XM_001081378 /// XM_239329 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1375158_at BI291441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291441 /DB_XREF=gi:14950985 /DB_XREF=UI-R-CV2-cgq-c-11-0-UI.s1 /CLONE=UI-R-CV2-cgq-c-11-0-UI /FEA=EST /CNT=19 /TID=Rn.66212.1 /TIER=Stack /STK=19 /UG=Rn.66212 /UG_TITLE=ESTs BI291441 1375159_at BI291443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291443 /DB_XREF=gi:14950989 /DB_XREF=UI-R-CV2-cgq-d-02-0-UI.s1 /CLONE=UI-R-CV2-cgq-d-02-0-UI /FEA=EST /CNT=19 /TID=Rn.66209.1 /TIER=Stack /STK=19 /UG=Rn.66209 /UG_TITLE=ESTs BI291443 1375160_at AI137180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137180 /DB_XREF=gi:3637957 /DB_XREF=UI-R-C2p-oh-f-10-0-UI.s1 /CLONE=UI-R-C2p-oh-f-10-0-UI /FEA=EST /CNT=19 /TID=Rn.11493.1 /TIER=Stack /STK=19 /UG=Rn.11493 /UG_TITLE=ESTs, Weakly similar to DDRT helix-destabilizing protein - rat (R.norvegicus) AI137180 Similar to RNA binding motif protein 24 LOC690139 690139 NM_001191100 /// XM_001073426 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1375161_at BM386389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386389 /DB_XREF=gi:18186442 /DB_XREF=UI-R-CN1-cjf-h-08-0-UI.s1 /CLONE=UI-R-CN1-cjf-h-08-0-UI /FEA=EST /CNT=30 /TID=Rn.4271.1 /TIER=Stack /STK=18 /UG=Rn.4271 /UG_TITLE=ESTs, Weakly similar to Y66H1A.3.p (Caenorhabditis elegans) (C.elegans) BM386389 mitochondrial ribosomal protein L55 Mrpl55 287356 NM_001105782 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 1375162_at AA800501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800501 /DB_XREF=gi:2863456 /DB_XREF=EST189998 /CLONE=RLIAA94 /FEA=EST /CNT=29 /TID=Rn.4260.1 /TIER=Stack /STK=18 /UG=Rn.4260 /UG_TITLE=ESTs, Weakly similar to F25H2.8.p (Caenorhabditis elegans) (C.elegans) AA800501 ubiquitin-conjugating enzyme E2Q family member 1 Ube2q1 295252 NM_001106448 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1375163_at BI275870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275870 /DB_XREF=gi:14920224 /DB_XREF=UI-R-CX0-bxh-e-07-0-UI.s1 /CLONE=UI-R-CX0-bxh-e-07-0-UI /FEA=EST /CNT=29 /TID=Rn.3903.1 /TIER=Stack /STK=18 /UG=Rn.3903 /UG_TITLE=ESTs BI275870 RAB11B, member RAS oncogene family Rab11b 79434 NM_032617 0006810 // transport // inferred from electronic annotation /// 0006928 // cellular component movement // non-traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // not recorded /// 0019003 // GDP binding // inferred from sequence or structural similarity /// 0019003 // GDP binding // inferred from electronic annotation 1375164_at AA800212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800212 /DB_XREF=gi:2863167 /DB_XREF=EST189709 /CLONE=RHEAM51 /FEA=EST /CNT=23 /TID=Rn.2305.4 /TIER=Stack /STK=18 /UG=Rn.2305 /LL=29693 /UG_GENE=Atp2a2 /UG_TITLE=ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 AA800212 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 Atp2a2 29693 NM_001110139 /// NM_001110823 /// NR_027839 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002026 // regulation of the force of heart contraction // not recorded /// 0006200 // ATP catabolic process // not recorded /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006937 // regulation of muscle contraction // traceable author statement /// 0006984 // ER-nucleus signaling pathway // inferred from electronic annotation /// 0006984 // ER-nucleus signaling pathway // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0045822 // negative regulation of heart contraction // inferred from electronic annotation /// 0045822 // negative regulation of heart contraction // not recorded /// 0070588 // calcium ion transmembrane transport // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // not recorded /// 0016529 // sarcoplasmic reticulum // traceable author statement /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0033017 // sarcoplasmic reticulum membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // inferred from direct assay /// 0005388 // calcium-transporting ATPase activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // not recorded /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0031775 // lutropin-choriogonadotropic hormone receptor binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048155 // S100 alpha binding // inferred from electronic annotation /// 0048155 // S100 alpha binding // not recorded 1375165_at AI179460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179460 /DB_XREF=gi:3730098 /DB_XREF=EST223173 /CLONE=RSPCH66 /FEA=EST /CNT=23 /TID=Rn.24224.1 /TIER=Stack /STK=18 /UG=Rn.24224 /UG_TITLE=ESTs AI179460 similar to paternally expressed 10 LOC678843 678843 XM_001053454 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1375166_at AI237581 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237581 /DB_XREF=gi:3831087 /DB_XREF=EST234143 /CLONE=RPLDB07 /FEA=EST /CNT=20 /TID=Rn.8520.2 /TIER=Stack /STK=18 /UG=Rn.8520 /UG_TITLE=ESTs AI237581 Mitochondrial ribosomal protein S26 Mrps26 362216 NM_001013206 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 1375167_at AW525158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525158 /DB_XREF=gi:7167543 /DB_XREF=UI-R-BJ0p-aio-d-12-0-UI.s1 /CLONE=UI-R-BJ0p-aio-d-12-0-UI /FEA=EST /CNT=21 /TID=Rn.2931.2 /TIER=Stack /STK=18 /UG=Rn.2931 /UG_TITLE=ESTs, Weakly similar to JH0159 histone H1d - rat (R.norvegicus) AW525158 H1 histone family, member X H1fx 500252 XM_001075299 /// XM_575600 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1375168_at AI103918 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103918 /DB_XREF=gi:3708391 /DB_XREF=EST213207 /CLONE=RHEBV14 /FEA=EST /CNT=19 /TID=Rn.22058.1 /TIER=Stack /STK=18 /UG=Rn.22058 /UG_TITLE=ESTs, Weakly similar to T17245 hypothetical protein DKFZp586J0917.1 (H.sapiens) AI103918 Histone deacetylase 7 Hdac7 84582 XM_001059057 /// XM_345868 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001570 // vasculogenesis // not recorded /// 0006325 // chromatin organization // traceable author statement /// 0006350 // transcription // inferred from electronic annotation /// 0006954 // inflammatory response // traceable author statement /// 0007043 // cell-cell junction assembly // not recorded /// 0007399 // nervous system development // traceable author statement /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016568 // chromatin modification // traceable author statement /// 0030183 // B cell differentiation // traceable author statement /// 0032703 // negative regulation of interleukin-2 production // not recorded /// 0042113 // B cell activation // traceable author statement /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045668 // negative regulation of osteoblast differentiation // not recorded /// 0045843 // negative regulation of striated muscle tissue development // traceable author statement /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0090050 // positive regulation of cell migration involved in sprouting angiogenesis // not recorded 0000118 // histone deacetylase complex // inferred from electronic annotation /// 0000118 // histone deacetylase complex // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation 0003682 // chromatin binding // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0004407 // histone deacetylase activity // inferred from electronic annotation /// 0004407 // histone deacetylase activity // traceable author statement /// 0005080 // protein kinase C binding // not recorded /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // traceable author statement /// 0016564 // transcription repressor activity // not recorded /// 0016566 // specific transcriptional repressor activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0070491 // transcription repressor binding // not recorded 1375169_at BF404391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404391 /DB_XREF=gi:11392366 /DB_XREF=UI-R-CA1-bie-f-09-0-UI.s1 /CLONE=UI-R-CA1-bie-f-09-0-UI /FEA=EST /CNT=18 /TID=Rn.62870.1 /TIER=Stack /STK=18 /UG=Rn.62870 /UG_TITLE=ESTs, Moderately similar to S54307 myosin heavy chain - rat (R.norvegicus) BF404391 myosin IXb Myo9b 25486 NM_012984 0006200 // ATP catabolic process // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // inferred from direct assay /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0032011 // ARF protein signal transduction // not recorded 0001726 // ruffle // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // inferred from direct assay /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0016459 // myosin complex // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from direct assay /// 0031941 // filamentous actin // inferred from electronic annotation /// 0031941 // filamentous actin // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000146 // microfilament motor activity // inferred from electronic annotation /// 0000146 // microfilament motor activity // not recorded /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from direct assay /// 0003779 // actin binding // not recorded /// 0003779 // actin binding // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from direct assay /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005100 // Rho GTPase activator activity // inferred from direct assay /// 0005100 // Rho GTPase activator activity // inferred from mutant phenotype /// 0005100 // Rho GTPase activator activity // not recorded /// 0005100 // Rho GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0016887 // ATPase activity // inferred from direct assay /// 0016887 // ATPase activity // inferred from mutant phenotype /// 0016887 // ATPase activity // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from physical interaction /// 0030898 // actin-dependent ATPase activity // inferred from direct assay /// 0030898 // actin-dependent ATPase activity // inferred from mutant phenotype /// 0042803 // protein homodimerization activity // not recorded /// 0043008 // ATP-dependent protein binding // inferred from direct assay /// 0043531 // ADP binding // inferred from direct assay /// 0043531 // ADP binding // inferred from mutant phenotype /// 0043531 // ADP binding // not recorded /// 0043531 // ADP binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from direct assay /// 0051015 // actin filament binding // inferred from mutant phenotype 1375170_at BG378926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378926 /DB_XREF=gi:13303398 /DB_XREF=UI-R-CV1-bvu-f-04-0-UI.s1 /CLONE=UI-R-CV1-bvu-f-04-0-UI /FEA=EST /CNT=59 /TID=Rn.2554.2 /TIER=Stack /STK=17 /UG=Rn.2554 /LL=79449 /UG_GENE=Rpl21 /UG_TITLE=ribosomal protein L21 BG378926 S100 calcium binding protein A11 (calizzarin) S100a11 445415 NM_001004095 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1375171_at BF396622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396622 /DB_XREF=gi:11381597 /DB_XREF=UI-R-BS2-bea-c-04-0-UI.s1 /CLONE=UI-R-BS2-bea-c-04-0-UI /FEA=EST /CNT=25 /TID=Rn.2806.1 /TIER=Stack /STK=17 /UG=Rn.2806 /UG_TITLE=ESTs BF396622 Similar to SET binding factor 2 RGD1559442 691042 NM_001134970 0016311 // dephosphorylation // inferred from electronic annotation 0016791 // phosphatase activity // inferred from electronic annotation 1375172_at AA850517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850517 /DB_XREF=gi:2938057 /DB_XREF=EST193284 /CLONE=ROVAG63 /FEA=EST /CNT=24 /TID=Rn.8617.2 /TIER=Stack /STK=17 /UG=Rn.8617 /UG_TITLE=ESTs, Weakly similar to COP1 protein (M.musculus) AA850517 Ring finger and WD repeat domain 2 Rfwd2 360860 NM_001025126 0000139 // Golgi membrane // inferred from direct assay 1375173_at BM392302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392302 /DB_XREF=gi:18192355 /DB_XREF=UI-R-DO1-ckp-d-12-0-UI.s1 /CLONE=UI-R-DO1-ckp-d-12-0-UI /FEA=EST /CNT=20 /TID=Rn.22331.1 /TIER=Stack /STK=17 /UG=Rn.22331 /UG_TITLE=ESTs, Weakly similar to Y37D8A.2.p (Caenorhabditis elegans) (C.elegans) BM392302 phospholipase B domain containing 2 Plbd2 246120 NM_139255 0016042 // lipid catabolic process // inferred from electronic annotation 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0043202 // lysosomal lumen // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation 1375174_at BI296653 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296653 /DB_XREF=gi:14961292 /DB_XREF=UI-R-CV2-cgt-g-04-0-UI.s1 /CLONE=UI-R-CV2-cgt-g-04-0-UI /FEA=EST /CNT=19 /TID=Rn.22725.1 /TIER=Stack /STK=17 /UG=Rn.22725 /UG_TITLE=ESTs BI296653 dpy-19-like 1 (C. elegans) Dpy19l1 315496 NM_001191791 /// XM_001053132 /// XM_235970 0016021 // integral to membrane // inferred from electronic annotation 1375175_at BE101876 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101876 /DB_XREF=gi:8494016 /DB_XREF=UI-R-BT1-aqi-a-04-0-UI.s1 /CLONE=UI-R-BT1-aqi-a-04-0-UI /FEA=EST /CNT=19 /TID=Rn.43973.1 /TIER=Stack /STK=17 /UG=Rn.43973 /UG_TITLE=ESTs BE101876 1375176_at BF409908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409908 /DB_XREF=gi:11397883 /DB_XREF=UI-R-CA1-bjy-c-01-0-UI.s1 /CLONE=UI-R-CA1-bjy-c-01-0-UI /FEA=EST /CNT=19 /TID=Rn.37833.1 /TIER=Stack /STK=17 /UG=Rn.37833 /UG_TITLE=ESTs BF409908 family with sequence similarity 172, member A Fam172a 294606 NM_001106401 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded 1375177_at AI454932 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454932 /DB_XREF=gi:4297184 /DB_XREF=UI-R-C2p-ql-e-11-0-UI.s1 /CLONE=UI-R-C2p-ql-e-11-0-UI /FEA=EST /CNT=19 /TID=Rn.7654.1 /TIER=Stack /STK=17 /UG=Rn.7654 /UG_TITLE=ESTs, Highly similar to KLFD_MOUSE Krueppel-like factor 13 (Transcription factor BTEB3) (Basic transcription element binding protein 3) (BTE-binding protein 3) (RANTES factor of late activated T lymphocytes-1) (RFLAT-1) (Erythroid transcription factor FKLF-2) (M.musculus) AI454932 Kruppel-like factor 13 Klf13 499171 NM_001109147 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1375178_at BE111601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111601 /DB_XREF=gi:8503706 /DB_XREF=UI-R-BJ1-avc-f-10-0-UI.s1 /CLONE=UI-R-BJ1-avc-f-10-0-UI /FEA=EST /CNT=18 /TID=Rn.11422.2 /TIER=Stack /STK=17 /UG=Rn.11422 /LL=24185 /UG_GENE=Akt1 /UG_TITLE=Murine thymoma viral (v-akt) oncogene homolog 1 BE111601 V-akt murine thymoma viral oncogene homolog 1 Akt1 24185 NM_033230 0000060 // protein import into nucleus, translocation // inferred from electronic annotation /// 0000060 // protein import into nucleus, translocation // not recorded /// 0001893 // maternal placenta development // inferred from electronic annotation /// 0001893 // maternal placenta development // not recorded /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // not recorded /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005978 // glycogen biosynthetic process // inferred from mutant phenotype /// 0005978 // glycogen biosynthetic process // inferred from electronic annotation /// 0005979 // regulation of glycogen biosynthetic process // not recorded /// 0005979 // regulation of glycogen biosynthetic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006412 // translation // inferred from mutant phenotype /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from direct assay /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0006916 // anti-apoptosis // traceable author statement /// 0006924 // activation-induced cell death of T cells // inferred from electronic annotation /// 0006924 // activation-induced cell death of T cells // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0007165 // signal transduction // inferred from direct assay /// 0007281 // germ cell development // inferred from electronic annotation /// 0007281 // germ cell development // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // inferred from mutant phenotype /// 0008286 // insulin receptor signaling pathway // not recorded /// 0008286 // insulin receptor signaling pathway // inferred from sequence or structural similarity /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0008637 // apoptotic mitochondrial changes // inferred from electronic annotation /// 0008637 // apoptotic mitochondrial changes // not recorded /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from electronic annotation /// 0009725 // response to hormone stimulus // not recorded /// 0010748 // negative regulation of plasma membrane long-chain fatty acid transport // inferred from electronic annotation /// 0010748 // negative regulation of plasma membrane long-chain fatty acid transport // not recorded /// 0010765 // positive regulation of sodium ion transport // inferred from electronic annotation /// 0010765 // positive regulation of sodium ion transport // not recorded /// 0010907 // positive regulation of glucose metabolic process // inferred from electronic annotation /// 0010907 // positive regulation of glucose metabolic process // not recorded /// 0010975 // regulation of neuron projection development // not recorded /// 0010975 // regulation of neuron projection development // inferred from sequence or structural similarity /// 0010975 // regulation of neuron projection development // inferred from electronic annotation /// 0015758 // glucose transport // inferred from electronic annotation /// 0015758 // glucose transport // not recorded /// 0016310 // phosphorylation // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0018105 // peptidyl-serine phosphorylation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // not recorded /// 0030030 // cell projection organization // inferred from direct assay /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0030163 // protein catabolic process // not recorded /// 0030307 // positive regulation of cell growth // inferred from direct assay /// 0030307 // positive regulation of cell growth // not recorded /// 0030307 // positive regulation of cell growth // inferred from electronic annotation /// 0030334 // regulation of cell migration // inferred from mutant phenotype /// 0031659 // positive regulation of cyclin-dependent protein kinase activity involved in G1/S // inferred from electronic annotation /// 0031659 // positive regulation of cyclin-dependent protein kinase activity involved in G1/S // not recorded /// 0031999 // negative regulation of fatty acid beta-oxidation // inferred from electronic annotation /// 0031999 // negative regulation of fatty acid beta-oxidation // not recorded /// 0032094 // response to food // inferred from electronic annotation /// 0032094 // response to food // not recorded /// 0032270 // positive regulation of cellular protein metabolic process // inferred from mutant phenotype /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from mutant phenotype /// 0032869 // cellular response to insulin stimulus // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0032880 // regulation of protein localization // inferred from electronic annotation /// 0032880 // regulation of protein localization // not recorded /// 0034405 // response to fluid shear stress // inferred from electronic annotation /// 0034405 // response to fluid shear stress // not recorded /// 0042640 // anagen // inferred from electronic annotation /// 0042640 // anagen // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043491 // protein kinase B signaling cascade // inferred from electronic annotation /// 0043491 // protein kinase B signaling cascade // not recorded /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045429 // positive regulation of nitric oxide biosynthetic process // not recorded /// 0045600 // positive regulation of fat cell differentiation // inferred from electronic annotation /// 0045600 // positive regulation of fat cell differentiation // not recorded /// 0045725 // positive regulation of glycogen biosynthetic process // inferred from electronic annotation /// 0045725 // positive regulation of glycogen biosynthetic process // not recorded /// 0045792 // negative regulation of cell size // inferred from direct assay /// 0045884 // regulation of survival gene product expression // inferred from electronic annotation /// 0045884 // regulation of survival gene product expression // not recorded /// 0046326 // positive regulation of glucose import // inferred from electronic annotation /// 0046326 // positive regulation of glucose import // not recorded /// 0046329 // negative regulation of JNK cascade // inferred from direct assay /// 0046889 // positive regulation of lipid biosynthetic process // inferred from electronic annotation /// 0046889 // positive regulation of lipid biosynthetic process // not recorded /// 0048009 // insulin-like growth factor receptor signaling pathway // not recorded /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0051000 // positive regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051000 // positive regulation of nitric-oxide synthase activity // not recorded /// 0060709 // glycogen cell development involved in embryonic placenta development // inferred from electronic annotation /// 0060709 // glycogen cell development involved in embryonic placenta development // not recorded /// 0060716 // labyrinthine layer blood vessel development // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // not recorded /// 0070141 // response to UV-A // inferred from electronic annotation /// 0070141 // response to UV-A // not recorded /// 0090004 // positive regulation of establishment of protein localization in plasma membrane // inferred from electronic annotation /// 0090004 // positive regulation of establishment of protein localization in plasma membrane // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005819 // spindle // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0015630 // microtubule cytoskeleton // not recorded /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from electronic annotation /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // not recorded /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0030235 // nitric-oxide synthase regulator activity // inferred from electronic annotation /// 0030235 // nitric-oxide synthase regulator activity // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // inferred from electronic annotation /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // not recorded 1375179_at AI231282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231282 /DB_XREF=gi:3815162 /DB_XREF=EST227970 /CLONE=REMDI13 /FEA=EST /CNT=17 /TID=Rn.11899.1 /TIER=Stack /STK=17 /UG=Rn.11899 /UG_TITLE=ESTs, Weakly similar to F22D6.2.p (Caenorhabditis elegans) (C.elegans) AI231282 1375180_at BF419280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419280 /DB_XREF=gi:11407269 /DB_XREF=UI-R-BJ2-bqp-g-03-0-UI.s1 /CLONE=UI-R-BJ2-bqp-g-03-0-UI /FEA=EST /CNT=17 /TID=Rn.25023.1 /TIER=Stack /STK=17 /UG=Rn.25023 /UG_TITLE=ESTs BF419280 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1375181_at AI170643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170643 /DB_XREF=gi:3710683 /DB_XREF=EST216577 /CLONE=RMUAZ36 /FEA=EST /CNT=87 /TID=Rn.397.1 /TIER=Stack /STK=16 /UG=Rn.397 /UG_TITLE=ESTs, Highly similar to RL12 RAT 60S RIBOSOMAL PROTEIN L12 (R.norvegicus) AI170643 similar to 60S ribosomal protein L12 LOC499782 499782 NM_001109198 0006412 // translation // inferred from electronic annotation 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation 1375182_at BE109671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109671 /DB_XREF=gi:8501776 /DB_XREF=UI-R-BJ1-avq-g-10-0-UI.s1 /CLONE=UI-R-BJ1-avq-g-10-0-UI /FEA=EST /CNT=25 /TID=Rn.8470.1 /TIER=Stack /STK=16 /UG=Rn.8470 /UG_TITLE=ESTs BE109671 1375183_at AW916745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916745 /DB_XREF=gi:8082585 /DB_XREF=EST348153 /CLONE=RGIDV72 /FEA=EST /CNT=21 /TID=Rn.8988.1 /TIER=Stack /STK=16 /UG=Rn.8988 /UG_TITLE=ESTs AW916745 Inhibitor of DNA binding 4 Id4 291023 NM_175582 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0007405 // neuroblast proliferation // inferred from electronic annotation /// 0007405 // neuroblast proliferation // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0021895 // cerebral cortex neuron differentiation // inferred from electronic annotation /// 0021895 // cerebral cortex neuron differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0048712 // negative regulation of astrocyte differentiation // inferred from electronic annotation /// 0048712 // negative regulation of astrocyte differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1375184_at BI281837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281837 /DB_XREF=gi:14931987 /DB_XREF=UI-R-CU0s-cbt-b-06-0-UI.s1 /CLONE=UI-R-CU0s-cbt-b-06-0-UI /FEA=EST /CNT=27 /TID=Rn.35278.1 /TIER=Stack /STK=16 /UG=Rn.35278 /UG_TITLE=ESTs BI281837 1375185_at BM390183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390183 /DB_XREF=gi:18190236 /DB_XREF=UI-R-CN1-cjp-p-18-0-UI.s1 /CLONE=UI-R-CN1-cjp-p-18-0-UI /FEA=EST /CNT=22 /TID=Rn.17156.1 /TIER=Stack /STK=16 /UG=Rn.17156 /UG_TITLE=ESTs BM390183 importin 7 Ipo7 308939 NM_001107545 0006606 // protein import into nucleus // not recorded /// 0006886 // intracellular protein transport // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0042393 // histone binding // not recorded 1375186_at AI169144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169144 /DB_XREF=gi:3705452 /DB_XREF=EST214978 /CLONE=RKIBO07 /FEA=EST /CNT=20 /TID=Rn.3536.1 /TIER=Stack /STK=16 /UG=Rn.3536 /UG_TITLE=ESTs, Weakly similar to K01H12.1.p (Caenorhabditis elegans) (C.elegans) AI169144 DPH3, KTI11 homolog (S. cerevisiae) Dph3 680594 NM_001134850 0050709 // negative regulation of protein secretion // not recorded /// 0051099 // positive regulation of binding // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded 1375187_at BF281701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281701 /DB_XREF=gi:11212771 /DB_XREF=EST446292 /CLONE=RGIAP30 /FEA=EST /CNT=19 /TID=Rn.22997.1 /TIER=Stack /STK=16 /UG=Rn.22997 /UG_TITLE=ESTs BF281701 1375188_at BF408552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408552 /DB_XREF=gi:11396527 /DB_XREF=UI-R-BJ2-brf-b-05-0-UI.s1 /CLONE=UI-R-BJ2-brf-b-05-0-UI /FEA=EST /CNT=19 /TID=Rn.22157.1 /TIER=Stack /STK=16 /UG=Rn.22157 /UG_TITLE=ESTs, Highly similar to katanin p80 subunit (H.sapiens) BF408552 katanin p80 (WD repeat containing) subunit B 1 Katnb1 291852 NM_001024746 0007026 // negative regulation of microtubule depolymerization // not recorded /// 0007026 // negative regulation of microtubule depolymerization // inferred from electronic annotation /// 0010942 // positive regulation of cell death // inferred from mutant phenotype /// 0010976 // positive regulation of neuron projection development // inferred from direct assay /// 0031117 // positive regulation of microtubule depolymerization // not recorded /// 0031117 // positive regulation of microtubule depolymerization // inferred from electronic annotation /// 0051013 // microtubule severing // inferred from direct assay 0000922 // spindle pole // not recorded /// 0000922 // spindle pole // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0008352 // katanin complex // not recorded /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0030426 // growth cone // inferred from direct assay /// 0030496 // midbody // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008568 // microtubule-severing ATPase activity // not recorded /// 0008568 // microtubule-severing ATPase activity // inferred from electronic annotation /// 0045502 // dynein binding // not recorded /// 0045502 // dynein binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 1375189_at BI285635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285635 /DB_XREF=gi:14939483 /DB_XREF=UI-R-DD0-bzv-b-04-0-UI.s1 /CLONE=UI-R-DD0-bzv-b-04-0-UI /FEA=EST /CNT=18 /TID=Rn.17092.1 /TIER=Stack /STK=16 /UG=Rn.17092 /UG_TITLE=ESTs, Weakly similar to Helix-turn-helix (Caenorhabditis elegans) (C.elegans) BI285635 endothelial differentiation-related factor 1 Edf1 296570 NM_001106557 0006350 // transcription // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0043388 // positive regulation of DNA binding // inferred from electronic annotation /// 0043388 // positive regulation of DNA binding // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005669 // transcription factor TFIID complex // inferred from electronic annotation /// 0005669 // transcription factor TFIID complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0004402 // histone acetyltransferase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1375190_at AI045333 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045333 /DB_XREF=gi:3292152 /DB_XREF=UI-R-C1-kh-e-06-0-UI.s1 /CLONE=UI-R-C1-kh-e-06-0-UI /FEA=EST /CNT=18 /TID=Rn.4316.1 /TIER=Stack /STK=16 /UG=Rn.4316 /UG_TITLE=ESTs, Moderately similar to TNP1_HUMAN TUMOR NECROSIS FACTOR, ALPHA-INDUCED PROTEIN 1, ENDOTHELIAL (H.sapiens) AI045333 potassium channel tetramerisation domain containing 13 Kctd13 293497 NM_198736 0006260 // DNA replication // inferred from direct assay /// 0006281 // DNA repair // traceable author statement /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0030036 // actin cytoskeleton organization // traceable author statement /// 0035024 // negative regulation of Rho protein signal transduction // not recorded /// 0043149 // stress fiber assembly // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0045449 // regulation of transcription // traceable author statement /// 0045740 // positive regulation of DNA replication // inferred from direct assay /// 0051260 // protein homooligomerization // traceable author statement /// 0051291 // protein heterooligomerization // traceable author statement 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031463 // Cul3-RING ubiquitin ligase complex // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0017049 // GTP-Rho binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1375191_at AI230379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230379 /DB_XREF=gi:3814266 /DB_XREF=EST227074 /CLONE=REMCV79 /FEA=EST /CNT=18 /TID=Rn.4131.1 /TIER=Stack /STK=16 /UG=Rn.4131 /UG_TITLE=ESTs AI230379 1375192_at BF393977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393977 /DB_XREF=gi:11378882 /DB_XREF=UI-R-CA0-bgx-h-09-0-UI.s1 /CLONE=UI-R-CA0-bgx-h-09-0-UI /FEA=EST /CNT=17 /TID=Rn.51394.1 /TIER=Stack /STK=16 /UG=Rn.51394 /UG_TITLE=ESTs BF393977 1375193_at BE095528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095528 /DB_XREF=gi:8486459 /DB_XREF=UI-R-BU0-apa-f-08-0-UI.s1 /CLONE=UI-R-BU0-apa-f-08-0-UI /FEA=EST /CNT=17 /TID=Rn.22159.1 /TIER=Stack /STK=16 /UG=Rn.22159 /UG_TITLE=ESTs BE095528 low density lipoprotein receptor-related protein 11 Lrp11 292462 NM_001106217 1375194_at AI231460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231460 /DB_XREF=gi:3815340 /DB_XREF=EST228148 /CLONE=REMDK43 /FEA=EST /CNT=16 /TID=Rn.12107.1 /TIER=Stack /STK=16 /UG=Rn.12107 /UG_TITLE=ESTs AI231460 1375195_at BG376894 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376894 /DB_XREF=gi:13301366 /DB_XREF=UI-R-CA1-bli-f-06-0-UI.s1 /CLONE=UI-R-CA1-bli-f-06-0-UI /FEA=EST /CNT=16 /TID=Rn.63548.1 /TIER=Stack /STK=16 /UG=Rn.63548 /UG_TITLE=ESTs, Highly similar to ubiquitin protein ligase E3 component n-recognin 1; ubiquitin-protein ligase e3 componen n-recognin (Mus musculus) (M.musculus) BG376894 1375196_at AW253933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253933 /DB_XREF=gi:6597524 /DB_XREF=UI-R-BJ0-aed-a-12-0-UI.s1 /CLONE=UI-R-BJ0-aed-a-12-0-UI /FEA=EST /CNT=16 /TID=Rn.23844.1 /TIER=Stack /STK=16 /UG=Rn.23844 /UG_TITLE=ESTs AW253933 Ankyrin repeat domain 11 Ankrd11 365023 NM_001108900 0001701 // in utero embryonic development // not recorded /// 0001894 // tissue homeostasis // not recorded /// 0035264 // multicellular organism growth // not recorded /// 0048705 // skeletal system morphogenesis // not recorded /// 0060323 // head morphogenesis // not recorded /// 0060348 // bone development // not recorded 1375197_at BG665384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665384 /DB_XREF=gi:13887306 /DB_XREF=DRACCB07 /CLONE=DRACCB07 /FEA=EST /CNT=25 /TID=Rn.3254.1 /TIER=Stack /STK=15 /UG=Rn.3254 /UG_TITLE=ESTs, Moderately similar to UCRY_HUMAN UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 6.4 KD PROTEIN (H.sapiens) BG665384 ubiquinol-cytochrome c reductase, 6.4kDa subunit Uqcr 690848 NM_001126097 /// XM_001076456 0006122 // mitochondrial electron transport, ubiquinol to cytochrome c // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0015992 // proton transport // not recorded /// 0034220 // ion transmembrane transport // not recorded 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0008121 // ubiquinol-cytochrome-c reductase activity // inferred from electronic annotation /// 0008121 // ubiquinol-cytochrome-c reductase activity // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation 1375198_at AW520820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520820 /DB_XREF=gi:7163198 /DB_XREF=UI-R-BJ0p-agh-h-04-0-UI.s1 /CLONE=UI-R-BJ0p-agh-h-04-0-UI /FEA=EST /CNT=19 /TID=Rn.24758.1 /TIER=Stack /STK=15 /UG=Rn.24758 /UG_TITLE=ESTs, Weakly similar to C29149 proline-rich protein - mouse (M.musculus) AW520820 similar to RNA binding motif protein 24 LOC681858 681858 XM_001058730 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1375199_at BG378641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378641 /DB_XREF=gi:13303113 /DB_XREF=UI-R-CV1-bvr-h-03-0-UI.s1 /CLONE=UI-R-CV1-bvr-h-03-0-UI /FEA=EST /CNT=18 /TID=Rn.38178.1 /TIER=Stack /STK=15 /UG=Rn.38178 /UG_TITLE=ESTs BG378641 1375200_at AI169102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169102 /DB_XREF=gi:3705410 /DB_XREF=EST214933 /CLONE=RKIBN14 /FEA=EST /CNT=17 /TID=Rn.22414.1 /TIER=Stack /STK=15 /UG=Rn.22414 /UG_TITLE=ESTs, Moderately similar to M04G12.1a.p (Caenorhabditis elegans) (C.elegans) AI169102 polyglutamine-containing protein Pqcp 314329 NM_001012470 0005634 // nucleus // inferred from electronic annotation 1375201_at AA946483 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946483 /DB_XREF=gi:4132816 /DB_XREF=EST201982 /CLONE=ROVAR65 /FEA=EST /CNT=16 /TID=Rn.7514.1 /TIER=Stack /STK=15 /UG=Rn.7514 /UG_TITLE=ESTs, Moderately similar to ETS-DOMAIN PROTEIN ELK-1 (M.musculus) AA946483 1375202_at AA800604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800604 /DB_XREF=gi:2863559 /DB_XREF=EST190101 /CLONE=RLUAB65 /FEA=EST /CNT=16 /TID=Rn.8590.2 /TIER=Stack /STK=15 /UG=Rn.8590 /UG_TITLE=ESTs AA800604 immediate early response 5 Ier5 498256 NM_001025137 1375203_at AI144889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144889 /DB_XREF=gi:3666688 /DB_XREF=UI-R-BT0-pp-a-11-0-UI.s1 /CLONE=UI-R-BT0-pp-a-11-0-UI /FEA=EST /CNT=15 /TID=Rn.22229.1 /TIER=Stack /STK=15 /UG=Rn.22229 /UG_TITLE=ESTs, Weakly similar to S25288 BTEB protein - rat (R.norvegicus) AI144889 1375204_at BI298526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298526 /DB_XREF=gi:14974806 /DB_XREF=UI-R-CV2-chk-e-01-0-UI.s1 /CLONE=UI-R-CV2-chk-e-01-0-UI /FEA=EST /CNT=15 /TID=Rn.76505.1 /TIER=Stack /STK=15 /UG=Rn.76505 /UG_TITLE=ESTs BI298526 1375205_at Z83046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Z83046 /DB_XREF=gi:4729175 /DB_XREF=RNZ83046 /CLONE=IRL423 /FEA=EST /CNT=20 /TID=Rn.4126.1 /TIER=Stack /STK=14 /UG=Rn.4126 /UG_TITLE=ESTs Z83046 p300/CBP-associated factor Pcaf 301164 NM_001024252 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0018076 // N-terminal peptidyl-lysine acetylation // inferred from electronic annotation /// 0018393 // internal peptidyl-lysine acetylation // inferred from electronic annotation /// 0018394 // peptidyl-lysine acetylation // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0000123 // histone acetyltransferase complex // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0016585 // chromatin remodeling complex // inferred from electronic annotation /// 0031672 // A band // inferred from electronic annotation /// 0031674 // I band // inferred from electronic annotation /// 0042641 // actomyosin // inferred from electronic annotation 0003712 // transcription cofactor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0004468 // lysine N-acetyltransferase activity // inferred from electronic annotation /// 0004861 // cyclin-dependent protein kinase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016407 // acetyltransferase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // inferred from electronic annotation 1375206_at BI275257 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275257 /DB_XREF=gi:14886929 /DB_XREF=UI-R-CX0-bwr-d-07-0-UI.s1 /CLONE=UI-R-CX0-bwr-d-07-0-UI /FEA=EST /CNT=18 /TID=Rn.43763.1 /TIER=Stack /STK=14 /UG=Rn.43763 /UG_TITLE=ESTs BI275257 WSC domain containing 1 Wscd1 287466 NM_001024234 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008146 // sulfotransferase activity // inferred from electronic annotation 1375207_at AI072682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072682 /DB_XREF=gi:3398876 /DB_XREF=UI-R-C2-nk-e-09-0-UI.s1 /CLONE=UI-R-C2-nk-e-09-0-UI /FEA=EST /CNT=19 /TID=Rn.22134.1 /TIER=Stack /STK=14 /UG=Rn.22134 /UG_TITLE=ESTs AI072682 scavenger receptor class F, member 2 Scarf2 287949 NM_001105864 0007157 // heterophilic cell-cell adhesion // not recorded /// 0007165 // signal transduction // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005044 // scavenger receptor activity // not recorded /// 0005515 // protein binding // not recorded 1375208_at BE109619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109619 /DB_XREF=gi:8501724 /DB_XREF=UI-R-BJ1-avq-c-02-0-UI.s1 /CLONE=UI-R-BJ1-avq-c-02-0-UI /FEA=EST /CNT=17 /TID=Rn.23412.1 /TIER=Stack /STK=14 /UG=Rn.23412 /UG_TITLE=ESTs BE109619 transmembrane protein 86A Tmem86a 308602 NM_001135016 0016021 // integral to membrane // inferred from electronic annotation 1375209_at AA893228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893228 /DB_XREF=gi:3020107 /DB_XREF=EST197031 /CLONE=RKIBD79 /FEA=EST /CNT=17 /TID=Rn.8413.1 /TIER=Stack /STK=14 /UG=Rn.8413 /UG_TITLE=ESTs AA893228 oxysterol binding protein-like 11 Osbpl11 303888 NM_001107090 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation 1375210_at AW252841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252841 /DB_XREF=gi:6596432 /DB_XREF=UI-R-BJ0-ael-d-01-0-UI.s1 /CLONE=UI-R-BJ0-ael-d-01-0-UI /FEA=EST /CNT=19 /TID=Rn.16739.1 /TIER=Stack /STK=14 /UG=Rn.16739 /UG_TITLE=ESTs AW252841 Similar to hypothetical protein ET RGD1307394 360667 NM_001108308 1375211_at BM391506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391506 /DB_XREF=gi:18191559 /DB_XREF=UI-R-DY0-ckr-e-18-0-UI.s1 /CLONE=UI-R-DY0-ckr-e-18-0-UI /FEA=EST /CNT=17 /TID=Rn.18019.1 /TIER=Stack /STK=14 /UG=Rn.18019 /UG_TITLE=ESTs, Weakly similar to ribonuclease 6 precursor (H.sapiens) BM391506 ribonuclease T2 Rnaset2 292306 NM_001106210 0003723 // RNA binding // inferred from electronic annotation /// 0033897 // ribonuclease T2 activity // inferred from electronic annotation 1375212_at AA964250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964250 /DB_XREF=gi:4279126 /DB_XREF=UI-R-E1-gl-d-05-0-UI.s1 /CLONE=UI-R-E1-gl-d-05-0-UI /FEA=EST /CNT=16 /TID=Rn.8972.1 /TIER=Stack /STK=14 /UG=Rn.8972 /UG_TITLE=ESTs AA964250 Ankyrin repeat domain 52 Ankrd52 362811 NM_001191875 /// XM_001070685 /// XM_343139 0005515 // protein binding // not recorded 1375213_at BM384604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384604 /DB_XREF=gi:18184657 /DB_XREF=UI-R-DY0-ckl-k-23-0-UI.s1 /CLONE=UI-R-DY0-ckl-k-23-0-UI /FEA=EST /CNT=19 /TID=Rn.35508.1 /TIER=Stack /STK=14 /UG=Rn.35508 /UG_TITLE=ESTs, Weakly similar to PPCC RAT PHOSPHOENOLPYRUVATE CARBOXYKINASE, CYTOSOLIC (R.norvegicus) BM384604 phosphoenolpyruvate carboxykinase 2 (mitochondrial) Pck2 361042 NM_001108377 0006094 // gluconeogenesis // inferred from direct assay /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006107 // oxaloacetate metabolic process // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0004611 // phosphoenolpyruvate carboxykinase activity // inferred from direct assay /// 0004611 // phosphoenolpyruvate carboxykinase activity // inferred from electronic annotation /// 0004613 // phosphoenolpyruvate carboxykinase (GTP) activity // inferred from direct assay /// 0004613 // phosphoenolpyruvate carboxykinase (GTP) activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0017076 // purine nucleotide binding // inferred from electronic annotation 1375214_at BE111638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111638 /DB_XREF=gi:8503743 /DB_XREF=UI-R-BJ1-avv-b-03-0-UI.s1 /CLONE=UI-R-BJ1-avv-b-03-0-UI /FEA=EST /CNT=16 /TID=Rn.9363.1 /TIER=Stack /STK=14 /UG=Rn.9363 /UG_TITLE=ESTs, Weakly similar to polypeptide GalNAc transferase T1 (Rattus norvegicus) (R.norvegicus) BE111638 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2) Galnt2 292090 NM_001106196 0002378 // immunoglobulin biosynthetic process // not recorded /// 0002378 // immunoglobulin biosynthetic process // inferred from electronic annotation /// 0018242 // protein O-linked glycosylation via serine // not recorded /// 0018242 // protein O-linked glycosylation via serine // inferred from electronic annotation /// 0018243 // protein O-linked glycosylation via threonine // not recorded /// 0018243 // protein O-linked glycosylation via threonine // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005795 // Golgi stack // not recorded /// 0005795 // Golgi stack // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // not recorded /// 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030145 // manganese ion binding // not recorded /// 0030145 // manganese ion binding // inferred from electronic annotation 1375215_x_at BE109558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109558 /DB_XREF=gi:8501663 /DB_XREF=UI-R-BJ1-avp-e-09-0-UI.s1 /CLONE=UI-R-BJ1-avp-e-09-0-UI /FEA=EST /CNT=15 /TID=Rn.23058.1 /TIER=Stack /STK=14 /UG=Rn.23058 /UG_TITLE=ESTs BE109558 pyroglutamyl-peptidase I Pgpep1 290648 NM_201988 0006508 // proteolysis // inferred from mutant phenotype /// 0006508 // proteolysis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1375216_at AA850909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850909 /DB_XREF=gi:2938449 /DB_XREF=EST193677 /CLONE=ROVAO30 /FEA=EST /CNT=15 /TID=Rn.7444.1 /TIER=Stack /STK=14 /UG=Rn.7444 /UG_TITLE=ESTs AA850909 poliovirus receptor-related 2 Pvrl2 308417 NM_001012064 0002860 // positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target // inferred from electronic annotation /// 0002860 // positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target // not recorded /// 0002891 // positive regulation of immunoglobulin mediated immune response // inferred from electronic annotation /// 0002891 // positive regulation of immunoglobulin mediated immune response // not recorded /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // not recorded /// 0007286 // spermatid development // inferred from electronic annotation /// 0007286 // spermatid development // not recorded /// 0019064 // viral envelope fusion with host membrane // inferred from electronic annotation /// 0019064 // viral envelope fusion with host membrane // not recorded /// 0033005 // positive regulation of mast cell activation // inferred from electronic annotation /// 0033005 // positive regulation of mast cell activation // not recorded /// 0042271 // susceptibility to natural killer cell mediated cytotoxicity // inferred from electronic annotation /// 0042271 // susceptibility to natural killer cell mediated cytotoxicity // not recorded /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // not recorded /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // inferred from electronic annotation /// 0046814 // virion attachment, binding of host cell surface coreceptor // inferred from electronic annotation /// 0046814 // virion attachment, binding of host cell surface coreceptor // not recorded /// 0051856 // adhesion to symbiont // inferred from electronic annotation /// 0051856 // adhesion to symbiont // not recorded /// 0060370 // susceptibility to T cell mediated cytotoxicity // inferred from electronic annotation /// 0060370 // susceptibility to T cell mediated cytotoxicity // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0005915 // zonula adherens // inferred from electronic annotation /// 0005915 // zonula adherens // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0050839 // cell adhesion molecule binding // inferred from electronic annotation /// 0050839 // cell adhesion molecule binding // not recorded 1375217_at BI296680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296680 /DB_XREF=gi:14961349 /DB_XREF=UI-R-CV2-cgv-a-12-0-UI.s1 /CLONE=UI-R-CV2-cgv-a-12-0-UI /FEA=EST /CNT=14 /TID=Rn.49219.1 /TIER=Stack /STK=14 /UG=Rn.49219 /UG_TITLE=ESTs BI296680 1375218_at BI291250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291250 /DB_XREF=gi:14950615 /DB_XREF=UI-R-CV2-cgn-c-10-0-UI.s1 /CLONE=UI-R-CV2-cgn-c-10-0-UI /FEA=EST /CNT=14 /TID=Rn.76512.1 /TIER=Stack /STK=14 /UG=Rn.76512 /UG_TITLE=ESTs BI291250 1375219_a_at AA944861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944861 /DB_XREF=gi:3104777 /DB_XREF=EST200360 /CLONE=REMAQ08 /FEA=EST /CNT=87 /TID=Rn.2115.4 /TIER=Stack /STK=13 /UG=Rn.2115 /LL=83789 /UG_GENE=Rps2 /UG_TITLE=ribosomal protein S2 AA944861 ribosomal protein S2-like /// similar to 40S ribosomal protein S2 /// ribosomal protein S2 LOC100360710 /// LOC688473 /// Rps2 100360710 /// 688473 /// 83789 NM_031838 /// XM_001067094 /// XM_002727071 /// XM_002727165 /// XM_002727166 /// XM_002727167 /// XM_002729999 /// XM_002730000 /// XM_002730001 0000028 // ribosomal small subunit assembly // inferred from mutant phenotype /// 0001731 // formation of translation preinitiation complex // inferred from mutant phenotype /// 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from mutant phenotype /// 0003735 // structural constituent of ribosome // not recorded /// 0005515 // protein binding // not recorded /// 0032403 // protein complex binding // inferred from mutant phenotype /// 0048602 // fibroblast growth factor 1 binding // not recorded /// 0048604 // fibroblast growth factor 3 binding // not recorded 1375220_at AA818971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818971 /DB_XREF=gi:4227638 /DB_XREF=UI-R-A0-as-g-06-0-UI.s1 /CLONE=UI-R-A0-as-g-06-0-UI /FEA=EST /CNT=30 /TID=Rn.3549.1 /TIER=Stack /STK=13 /UG=Rn.3549 /UG_TITLE=ESTs AA818971 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11 Ndufa11 301123 NM_212517 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0008565 // protein transporter activity // inferred from electronic annotation 1375221_at BE109676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109676 /DB_XREF=gi:8501781 /DB_XREF=UI-R-BJ1-avq-h-04-0-UI.s1 /CLONE=UI-R-BJ1-avq-h-04-0-UI /FEA=EST /CNT=27 /TID=Rn.12542.1 /TIER=Stack /STK=13 /UG=Rn.12542 /UG_TITLE=ESTs BE109676 thioredoxin-related transmembrane protein 4 Tmx4 296182 NM_001100529 0045454 // cell redox homeostasis // inferred from electronic annotation 1375222_at AI575699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575699 /DB_XREF=gi:4560075 /DB_XREF=UI-R-G0-uu-c-11-0-UI.s1 /CLONE=UI-R-G0-uu-c-11-0-UI /FEA=EST /CNT=21 /TID=Rn.41430.1 /TIER=Stack /STK=13 /UG=Rn.41430 /UG_TITLE=ESTs, Weakly similar to SH3 domain binding protein (R.norvegicus) AI575699 Hypothetical protein LOC689154 LOC689154 689154 XM_001069768 1375223_at BI294737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294737 /DB_XREF=gi:14957482 /DB_XREF=UI-R-DK0-ceb-e-05-0-UI.s1 /CLONE=UI-R-DK0-ceb-e-05-0-UI /FEA=EST /CNT=18 /TID=Rn.17819.1 /TIER=Stack /STK=13 /UG=Rn.17819 /UG_TITLE=ESTs BI294737 1375224_at AW520812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520812 /DB_XREF=gi:7163190 /DB_XREF=UI-R-BJ0p-agh-g-08-0-UI.s1 /CLONE=UI-R-BJ0p-agh-g-08-0-UI /FEA=EST /CNT=16 /TID=Rn.17905.1 /TIER=Stack /STK=13 /UG=Rn.17905 /UG_TITLE=ESTs AW520812 pleckstrin homology-like domain, family A, member 3 Phlda3 363989 NM_001012206 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from sequence or structural similarity /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // inferred from sequence or structural similarity /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // inferred from electronic annotation /// 0051898 // negative regulation of protein kinase B signaling cascade // not recorded /// 0051898 // negative regulation of protein kinase B signaling cascade // inferred from sequence or structural similarity /// 0051898 // negative regulation of protein kinase B signaling cascade // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // not recorded /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from sequence or structural similarity /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from electronic annotation /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // not recorded /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from sequence or structural similarity /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from electronic annotation /// 0010314 // phosphatidylinositol-5-phosphate binding // not recorded /// 0010314 // phosphatidylinositol-5-phosphate binding // inferred from sequence or structural similarity /// 0010314 // phosphatidylinositol-5-phosphate binding // inferred from electronic annotation /// 0032266 // phosphatidylinositol-3-phosphate binding // not recorded /// 0032266 // phosphatidylinositol-3-phosphate binding // inferred from sequence or structural similarity /// 0032266 // phosphatidylinositol-3-phosphate binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // not recorded /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // inferred from sequence or structural similarity /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // inferred from electronic annotation /// 0080025 // phosphatidylinositol-3,5-bisphosphate binding // not recorded /// 0080025 // phosphatidylinositol-3,5-bisphosphate binding // inferred from sequence or structural similarity /// 0080025 // phosphatidylinositol-3,5-bisphosphate binding // inferred from electronic annotation 1375225_at BE102330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102330 /DB_XREF=gi:8494429 /DB_XREF=UI-R-BT1-aql-c-07-0-UI.s1 /CLONE=UI-R-BT1-aql-c-07-0-UI /FEA=EST /CNT=16 /TID=Rn.12740.1 /TIER=Stack /STK=13 /UG=Rn.12740 /UG_TITLE=ESTs, Weakly similar to minichromosome maintenance deficient (S. cerevisiae) 3-associate; nuclear protein GANP (Mus musculus) (M.musculus) BE102330 Similar to RIKEN cDNA 2410004C24 RGD1308049 293690 XM_002725779 /// XM_002728860 1375226_at BI287864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287864 /DB_XREF=gi:14943891 /DB_XREF=UI-R-CW0s-ccm-b-05-0-UI.s1 /CLONE=UI-R-CW0s-ccm-b-05-0-UI /FEA=EST /CNT=15 /TID=Rn.3316.1 /TIER=Stack /STK=13 /UG=Rn.3316 /UG_TITLE=ESTs BI287864 TBC1 domain family, member 10b Tbc1d10b 365372 NM_001108921 /// XM_001078373 /// XM_344965 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1375227_at BF416235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416235 /DB_XREF=gi:11404224 /DB_XREF=UI-R-CA0-bkr-b-02-0-UI.s1 /CLONE=UI-R-CA0-bkr-b-02-0-UI /FEA=EST /CNT=15 /TID=Rn.63118.1 /TIER=Stack /STK=13 /UG=Rn.63118 /UG_TITLE=ESTs BF416235 1375228_at AI172186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172186 /DB_XREF=gi:4134716 /DB_XREF=EST218181 /CLONE=RMUBW02 /FEA=EST /CNT=15 /TID=Rn.22256.1 /TIER=Stack /STK=13 /UG=Rn.22256 /UG_TITLE=ESTs AI172186 bromodomain containing 2 Brd2 294276 NM_212495 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 1375229_at AA818427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818427 /DB_XREF=gi:4228223 /DB_XREF=UI-R-A0-au-g-05-0-UI.s1 /CLONE=UI-R-A0-au-g-05-0-UI /FEA=EST /CNT=15 /TID=Rn.6013.3 /TIER=Stack /STK=13 /UG=Rn.6013 /LL=171041 /UG_GENE=Klc1 /UG_TITLE=kinesin light chain 1 AA818427 Kinesin light chain 1 Klc1 171041 NM_001081972 /// NM_001081973 /// NM_001081974 0008088 // axon cargo transport // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005871 // kinesin complex // inferred from direct assay /// 0005871 // kinesin complex // inferred from electronic annotation /// 0005871 // kinesin complex // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0031410 // cytoplasmic vesicle // not recorded /// 0035253 // ciliary rootlet // not recorded /// 0043005 // neuron projection // not recorded /// 0043227 // membrane-bounded organelle // not recorded 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1375230_at AA800192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800192 /DB_XREF=gi:2863147 /DB_XREF=EST189689 /CLONE=RHEAM29 /FEA=EST /CNT=16 /TID=Rn.8571.1 /TIER=Stack /STK=13 /UG=Rn.8571 /UG_TITLE=ESTs AA800192 1375231_a_at BI281838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281838 /DB_XREF=gi:14931989 /DB_XREF=UI-R-CU0s-cbt-b-07-0-UI.s1 /CLONE=UI-R-CU0s-cbt-b-07-0-UI /FEA=EST /CNT=14 /TID=Rn.17634.1 /TIER=Stack /STK=13 /UG=Rn.17634 /UG_TITLE=ESTs BI281838 CXXC finger 5 Cxxc5 291670 NM_001007628 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375232_at BM388847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388847 /DB_XREF=gi:18188900 /DB_XREF=UI-R-DZ0-ckn-g-10-0-UI.s1 /CLONE=UI-R-DZ0-ckn-g-10-0-UI /FEA=EST /CNT=14 /TID=Rn.11737.1 /TIER=Stack /STK=13 /UG=Rn.11737 /UG_TITLE=ESTs BM388847 methyl-CpG binding domain protein 6 Mbd6 362892 NM_001170566 /// XM_001055890 /// XM_343219 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1375233_at BI296668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296668 /DB_XREF=gi:14961325 /DB_XREF=UI-R-CV2-cgt-h-09-0-UI.s1 /CLONE=UI-R-CV2-cgt-h-09-0-UI /FEA=EST /CNT=14 /TID=Rn.66604.1 /TIER=Stack /STK=13 /UG=Rn.66604 /UG_TITLE=ESTs BI296668 1375234_at AI009170 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009170 /DB_XREF=gi:4133002 /DB_XREF=EST203621 /CLONE=REMBJ87 /FEA=EST /CNT=14 /TID=Rn.8482.1 /TIER=Stack /STK=13 /UG=Rn.8482 /UG_TITLE=ESTs AI009170 nuclear receptor coactivator 5 Ncoa5 296372 NM_001106543 0006412 // translation // inferred from electronic annotation 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1375235_at BG378732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378732 /DB_XREF=gi:13303204 /DB_XREF=UI-R-CV1-bvs-b-10-0-UI.s1 /CLONE=UI-R-CV1-bvs-b-10-0-UI /FEA=EST /CNT=13 /TID=Rn.66598.1 /TIER=Stack /STK=13 /UG=Rn.66598 /UG_TITLE=ESTs BG378732 1375236_at BI291246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291246 /DB_XREF=gi:14950607 /DB_XREF=UI-R-CV2-cgn-c-05-0-UI.s1 /CLONE=UI-R-CV2-cgn-c-05-0-UI /FEA=EST /CNT=13 /TID=Rn.76499.1 /TIER=Stack /STK=13 /UG=Rn.76499 /UG_TITLE=ESTs BI291246 similar to mKIAA1377 protein RGD1563556 315409 XM_001072925 /// XM_235805 0005515 // protein binding // not recorded 1375237_at BF404538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404538 /DB_XREF=gi:11392478 /DB_XREF=UI-R-CA1-big-b-11-0-UI.s1 /CLONE=UI-R-CA1-big-b-11-0-UI /FEA=EST /CNT=13 /TID=Rn.24990.1 /TIER=Stack /STK=13 /UG=Rn.24990 /UG_TITLE=ESTs BF404538 1375238_at BM385814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385814 /DB_XREF=gi:18185867 /DB_XREF=UI-R-CN1-clx-n-16-0-UI.s1 /CLONE=UI-R-CN1-clx-n-16-0-UI /FEA=EST /CNT=13 /TID=Rn.41109.1 /TIER=Stack /STK=13 /UG=Rn.41109 /UG_TITLE=ESTs, Moderately similar to ST11_HUMAN SERINETHREONINE-PROTEIN KINASE 11 (H.sapiens) BM385814 Serine/threonine kinase 11 Stk11 314621 NM_001108069 0001894 // tissue homeostasis // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0007409 // axonogenesis // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // not recorded /// 0030111 // regulation of Wnt receptor signaling pathway // not recorded /// 0033762 // response to glucagon stimulus // inferred from expression pattern /// 0033993 // response to lipid // inferred from direct assay /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045722 // positive regulation of gluconeogenesis // inferred from mutant phenotype /// 0046320 // regulation of fatty acid oxidation // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051896 // regulation of protein kinase B signaling cascade // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060770 // negative regulation of epithelial cell proliferation involved in prostate gland development // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from mutant phenotype /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0030275 // LRR domain binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction 1375239_at AW433964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433964 /DB_XREF=gi:6965271 /DB_XREF=UI-R-BJ0p-afn-f-08-0-UI.s1 /CLONE=UI-R-BJ0p-afn-f-08-0-UI /FEA=EST /CNT=13 /TID=Rn.17982.2 /TIER=Stack /STK=13 /UG=Rn.17982 /LL=114562 /UG_GENE=Cdc37 /UG_TITLE=CDC37 (cell division cycle 37, S. cerevisiae, homolog) AW433964 0007155 // cell adhesion // inferred from direct assay /// 0031175 // neuron projection development // inferred from mutant phenotype 0016020 // membrane // inferred from electronic annotation 0004725 // protein tyrosine phosphatase activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation 1375240_at AI407473 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407473 /DB_XREF=gi:4250977 /DB_XREF=EST235762 /CLONE=ROVDS87 /FEA=EST /CNT=13 /TID=Rn.23830.1 /TIER=Stack /STK=13 /UG=Rn.23830 /UG_TITLE=ESTs, Highly similar to bromodomain adjacent to zinc finger domain, 1B; Williams-Beuren syndrome chromosome region 9 homolog (human) (Mus musculus) (M.musculus) AI407473 Bromodomain adjacent to zinc finger domain, 1B Baz1b 368002 NM_001191916 /// XM_001077467 /// XM_347166 0003007 // heart morphogenesis // not recorded /// 0006302 // double-strand break repair // not recorded /// 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006333 // chromatin assembly or disassembly // not recorded /// 0006337 // nucleosome disassembly // not recorded /// 0006338 // chromatin remodeling // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0016572 // histone phosphorylation // not recorded /// 0034725 // DNA replication-dependent nucleosome disassembly // inferred from electronic annotation /// 0034725 // DNA replication-dependent nucleosome disassembly // not recorded /// 0043044 // ATP-dependent chromatin remodeling // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // not recorded /// 0048096 // chromatin-mediated maintenance of transcription // not recorded 0000793 // condensed chromosome // inferred from electronic annotation /// 0000793 // condensed chromosome // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005721 // centromeric heterochromatin // inferred from electronic annotation /// 0005721 // centromeric heterochromatin // not recorded /// 0016585 // chromatin remodeling complex // not recorded /// 0043596 // nuclear replication fork // not recorded /// 0070603 // SWI/SNF-type complex // inferred from electronic annotation /// 0070603 // SWI/SNF-type complex // not recorded 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0030546 // receptor activator activity // inferred from electronic annotation /// 0030546 // receptor activator activity // not recorded /// 0032947 // protein complex scaffold // inferred from electronic annotation /// 0032947 // protein complex scaffold // not recorded /// 0035173 // histone kinase activity // inferred from electronic annotation /// 0035173 // histone kinase activity // not recorded /// 0042393 // histone binding // not recorded /// 0042809 // vitamin D receptor binding // inferred from electronic annotation /// 0042809 // vitamin D receptor binding // not recorded /// 0070577 // histone acetyl-lysine binding // inferred from electronic annotation /// 0070577 // histone acetyl-lysine binding // not recorded 1375241_at BF408498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408498 /DB_XREF=gi:11396473 /DB_XREF=UI-R-BJ2-bre-e-04-0-UI.s1 /CLONE=UI-R-BJ2-bre-e-04-0-UI /FEA=EST /CNT=13 /TID=Rn.23115.1 /TIER=Stack /STK=13 /UG=Rn.23115 /UG_TITLE=ESTs, Weakly similar to C50D2.7.p (Caenorhabditis elegans) (C.elegans) BF408498 Malonyl CoA:ACP acyltransferase (mitochondrial) Mcat 315173 NM_001191788 /// XM_001077904 /// XM_235527 0006633 // fatty acid biosynthetic process // not recorded /// 0008152 // metabolic process // not recorded 0005739 // mitochondrion // not recorded 0004314 // [acyl-carrier-protein] S-malonyltransferase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016740 // transferase activity // not recorded 1375242_at BI296440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296440 /DB_XREF=gi:14960866 /DB_XREF=UI-R-CV2-cgr-c-01-0-UI.s1 /CLONE=UI-R-CV2-cgr-c-01-0-UI /FEA=EST /CNT=13 /TID=Rn.73037.1 /TIER=Stack /STK=13 /UG=Rn.73037 /UG_TITLE=ESTs BI296440 similar to tumor suppressor candidate 5 LOC687797 687797 XM_001080179 /// XM_002727978 1375243_at BE113157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113157 /DB_XREF=gi:8505262 /DB_XREF=UI-R-BJ1-awc-b-10-0-UI.s1 /CLONE=UI-R-BJ1-awc-b-10-0-UI /FEA=EST /CNT=13 /TID=Rn.44877.1 /TIER=Stack /STK=13 /UG=Rn.44877 /UG_TITLE=ESTs, Weakly similar to SH3 domain binding protein (R.norvegicus) BE113157 1375244_at BI291447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291447 /DB_XREF=gi:14951007 /DB_XREF=UI-R-CV2-cgq-e-02-0-UI.s1 /CLONE=UI-R-CV2-cgq-e-02-0-UI /FEA=EST /CNT=13 /TID=Rn.79918.1 /TIER=Stack /STK=13 /UG=Rn.79918 /UG_TITLE=ESTs BI291447 1375245_at AA800669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800669 /DB_XREF=gi:2863624 /DB_XREF=EST190166 /CLONE=RLUAK11 /FEA=EST /CNT=43 /TID=Rn.4108.1 /TIER=Stack /STK=12 /UG=Rn.4108 /UG_TITLE=ESTs, Highly similar to A36180 61K transforming protein (H.sapiens) AA800669 protein phosphatase 2 (formerly 2A), regulatory subunit A, alpha isoform Ppp2r1a 117281 NM_057140 0007059 // chromosome segregation // inferred from electronic annotation /// 0007059 // chromosome segregation // not recorded 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation /// 0000159 // protein phosphatase type 2A complex // not recorded /// 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000775 // chromosome, centromeric region // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003823 // antigen binding // inferred from electronic annotation /// 0003823 // antigen binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1375246_at BG371965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371965 /DB_XREF=gi:13268502 /DB_XREF=UI-R-CV0-brk-e-12-0-UI.s1 /CLONE=UI-R-CV0-brk-e-12-0-UI /FEA=EST /CNT=23 /TID=Rn.4334.1 /TIER=Stack /STK=12 /UG=Rn.4334 /UG_TITLE=ESTs, Moderately similar to T13381 hypothetical protein EG:115C2.12 - fruit fly (D.melanogaster) BG371965 coiled-coil domain containing 72 Ccdc72 679747 NM_001126048 1375247_at BG372713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372713 /DB_XREF=gi:13269250 /DB_XREF=UI-R-CV1-brz-f-07-0-UI.s1 /CLONE=UI-R-CV1-brz-f-07-0-UI /FEA=EST /CNT=19 /TID=Rn.18592.1 /TIER=Stack /STK=12 /UG=Rn.18592 /UG_TITLE=ESTs BG372713 Monoglyceride lipase Mgll 29254 NM_138502 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0019369 // arachidonic acid metabolic process // inferred from sequence or structural similarity /// 0035466 // regulation of signaling pathway // inferred from sequence or structural similarity /// 0046464 // acylglycerol catabolic process // inferred from sequence or structural similarity /// 0050727 // regulation of inflammatory response // inferred from sequence or structural similarity /// 0051930 // regulation of sensory perception of pain // inferred from sequence or structural similarity 0045202 // synapse // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0008289 // lipid binding // inferred from mutant phenotype /// 0016787 // hydrolase activity // inferred from direct assay /// 0016787 // hydrolase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0047372 // acylglycerol lipase activity // inferred from sequence or structural similarity /// 0047372 // acylglycerol lipase activity // inferred from electronic annotation 1375248_at BI294916 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294916 /DB_XREF=gi:14957838 /DB_XREF=UI-R-DK0-ced-f-05-0-UI.s1 /CLONE=UI-R-DK0-ced-f-05-0-UI /FEA=EST /CNT=16 /TID=Rn.81182.1 /TIER=Stack /STK=12 /UG=Rn.81182 /UG_TITLE=ESTs, Weakly similar to A39066 proline-rich protein 4 - rat (R.norvegicus) BI294916 Kruppel-like factor 2 (lung) Klf2 306330 NM_001007684 0006350 // transcription // inferred from electronic annotation /// 0032715 // negative regulation of interleukin-6 production // inferred from mutant phenotype /// 0034616 // response to laminar fluid shear stress // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from mutant phenotype /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0070301 // cellular response to hydrogen peroxide // inferred from expression pattern /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1375249_at BE109033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109033 /DB_XREF=gi:8501138 /DB_XREF=UI-R-BS1-azc-c-01-0-UI.s1 /CLONE=UI-R-BS1-azc-c-01-0-UI /FEA=EST /CNT=15 /TID=Rn.24962.1 /TIER=Stack /STK=12 /UG=Rn.24962 /UG_TITLE=ESTs, Moderately similar to I2C2_RAT EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 (EIF2C 2) (EIF-2C 2) (GOLGI ER PROTEIN 95 KDA) (GERP95) (R.norvegicus) BE109033 eukaryotic translation initiation factor 2C, 1 Eif2c1 313594 NM_001191765 /// XM_001058138 /// XM_233544 0000956 // nuclear-transcribed mRNA catabolic process // not recorded /// 0035278 // negative regulation of translation involved in gene silencing by miRNA // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375250_at BF549771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549771 /DB_XREF=gi:11659501 /DB_XREF=UI-R-A0-az-b-01-0-UI.r1 /CLONE=UI-R-A0-az-b-01-0-UI /FEA=EST /CNT=15 /TID=Rn.17157.1 /TIER=Stack /STK=12 /UG=Rn.17157 /UG_TITLE=ESTs, Highly similar to NALS MOUSE N-ACETYLLACTOSAMINE SYNTHASE (M.musculus) BF549771 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 B4galt1 24390 NM_053287 0002064 // epithelial cell development // inferred from electronic annotation /// 0002064 // epithelial cell development // not recorded /// 0002526 // acute inflammatory response // inferred from electronic annotation /// 0002526 // acute inflammatory response // not recorded /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005989 // lactose biosynthetic process // inferred from electronic annotation /// 0005989 // lactose biosynthetic process // not recorded /// 0006012 // galactose metabolic process // inferred from electronic annotation /// 0006012 // galactose metabolic process // not recorded /// 0006496 // protein amino acid terminal N-glycosylation // inferred from electronic annotation /// 0006496 // protein amino acid terminal N-glycosylation // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation /// 0007339 // binding of sperm to zona pellucida // not recorded /// 0007341 // penetration of zona pellucida // inferred from electronic annotation /// 0007341 // penetration of zona pellucida // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009101 // glycoprotein biosynthetic process // inferred from electronic annotation /// 0009101 // glycoprotein biosynthetic process // not recorded /// 0009312 // oligosaccharide biosynthetic process // not recorded /// 0009312 // oligosaccharide biosynthetic process // traceable author statement /// 0009312 // oligosaccharide biosynthetic process // inferred from electronic annotation /// 0009611 // response to wounding // inferred from expression pattern /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0030879 // mammary gland development // not recorded /// 0042060 // wound healing // not recorded /// 0042060 // wound healing // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0045136 // development of secondary sexual characteristics // inferred from electronic annotation /// 0045136 // development of secondary sexual characteristics // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // not recorded /// 0050900 // leukocyte migration // inferred from electronic annotation /// 0050900 // leukocyte migration // not recorded /// 0051270 // regulation of cellular component movement // inferred from electronic annotation /// 0051270 // regulation of cellular component movement // not recorded /// 0060046 // regulation of acrosome reaction // inferred from electronic annotation /// 0060046 // regulation of acrosome reaction // not recorded /// 0060054 // positive regulation of epithelial cell proliferation involved in wound healing // inferred from electronic annotation /// 0060054 // positive regulation of epithelial cell proliferation involved in wound healing // not recorded /// 0060055 // angiogenesis involved in wound healing // inferred from electronic annotation /// 0060055 // angiogenesis involved in wound healing // not recorded /// 0060058 // positive regulation of apoptosis involved in mammary gland involution // inferred from electronic annotation /// 0060058 // positive regulation of apoptosis involved in mammary gland involution // not recorded 0000138 // Golgi trans cisterna // inferred from electronic annotation /// 0000138 // Golgi trans cisterna // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0030057 // desmosome // inferred from electronic annotation /// 0030057 // desmosome // not recorded /// 0030112 // glycocalyx // inferred from electronic annotation /// 0030112 // glycocalyx // not recorded /// 0031526 // brush border membrane // inferred from electronic annotation /// 0031526 // brush border membrane // not recorded /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0003831 // beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity // inferred from electronic annotation /// 0003831 // beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity // not recorded /// 0003945 // N-acetyllactosamine synthase activity // inferred from electronic annotation /// 0003945 // N-acetyllactosamine synthase activity // not recorded /// 0004461 // lactose synthase activity // inferred from electronic annotation /// 0004461 // lactose synthase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // not recorded /// 0008378 // galactosyltransferase activity // not recorded /// 0008378 // galactosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0035250 // UDP-galactosyltransferase activity // not recorded /// 0035250 // UDP-galactosyltransferase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043014 // alpha-tubulin binding // inferred from electronic annotation /// 0043014 // alpha-tubulin binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // not recorded 1375251_at AI179323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179323 /DB_XREF=gi:3729961 /DB_XREF=EST223018 /CLONE=RSPCF19 /FEA=EST /CNT=15 /TID=Rn.13302.1 /TIER=Stack /STK=12 /UG=Rn.13302 /UG_TITLE=ESTs, Highly similar to JC5707 HYA22 protein (H.sapiens) AI179323 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like Ctdspl 301056 NM_001106865 0016791 // phosphatase activity // inferred from electronic annotation 1375252_at AI230533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230533 /DB_XREF=gi:3814420 /DB_XREF=EST227228 /CLONE=REMCX73 /FEA=EST /CNT=15 /TID=Rn.24980.1 /TIER=Stack /STK=12 /UG=Rn.24980 /UG_TITLE=ESTs, Highly similar to KIAA1089 protein (H.sapiens) AI230533 Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans) Smg5 681012 XM_001059906 /// XM_002725989 0035303 // regulation of dephosphorylation // inferred from electronic annotation /// 0035303 // regulation of dephosphorylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051721 // protein phosphatase 2A binding // inferred from electronic annotation /// 0051721 // protein phosphatase 2A binding // not recorded 1375253_at BF403837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403837 /DB_XREF=gi:11391812 /DB_XREF=UI-R-CA1-bix-h-15-0-UI.s1 /CLONE=UI-R-CA1-bix-h-15-0-UI /FEA=EST /CNT=14 /TID=Rn.21931.1 /TIER=Stack /STK=12 /UG=Rn.21931 /UG_TITLE=ESTs, Weakly similar to NF-E2-related factor 2 (Rattus norvegicus) (R.norvegicus) BF403837 nuclear factor, erythroid derived 2,-like 1 Nfe2l1 360610 NM_001108293 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1375254_at BE103444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103444 /DB_XREF=gi:8495543 /DB_XREF=UI-R-BX0-arc-b-07-0-UI.s1 /CLONE=UI-R-BX0-arc-b-07-0-UI /FEA=EST /CNT=14 /TID=Rn.17690.1 /TIER=Stack /STK=12 /UG=Rn.17690 /UG_TITLE=ESTs, Highly similar to CMST MOUSE CMP-SIALIC ACID TRANSPORTER (M.musculus) BE103444 solute carrier family 35 (CMP-sialic acid transporter), member A1 Slc35a1 313139 NM_001107924 0006810 // transport // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0015780 // nucleotide-sugar transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005338 // nucleotide-sugar transmembrane transporter activity // inferred from electronic annotation /// 0005351 // sugar:hydrogen symporter activity // inferred from electronic annotation 1375255_at AW531105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531105 /DB_XREF=gi:7173519 /DB_XREF=UI-R-C4-alg-g-04-0-UI.s1 /CLONE=UI-R-C4-alg-g-04-0-UI /FEA=EST /CNT=14 /TID=Rn.38324.1 /TIER=Stack /STK=12 /UG=Rn.38324 /UG_TITLE=ESTs, Highly similar to A54602 microtubule-associated serinethreonine protein kinase MAST205 - mouse (M.musculus) AW531105 Microtubule associated serine/threonine kinase 2 Mast2 313819 NM_001108005 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0045075 // regulation of interleukin-12 biosynthetic process // not recorded /// 0048515 // spermatid differentiation // not recorded 0015630 // microtubule cytoskeleton // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008017 // microtubule binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0019902 // phosphatase binding // not recorded 1375256_at BF406299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406299 /DB_XREF=gi:11394274 /DB_XREF=UI-R-CA1-bjf-f-15-0-UI.s1 /CLONE=UI-R-CA1-bjf-f-15-0-UI /FEA=EST /CNT=13 /TID=Rn.63002.1 /TIER=Stack /STK=12 /UG=Rn.63002 /UG_TITLE=ESTs BF406299 1375257_at AI137787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137787 /DB_XREF=gi:3638564 /DB_XREF=UI-R-E1-ga-f-08-0-UI.s1 /CLONE=UI-R-E1-ga-f-08-0-UI /FEA=EST /CNT=13 /TID=Rn.25012.1 /TIER=Stack /STK=12 /UG=Rn.25012 /UG_TITLE=ESTs, Highly similar to S19597 hypothetical protein - rat (R.norvegicus) AI137787 SRY (sex determining region Y)-box 4 Sox4 364712 XM_001068302 /// XM_344594 0001666 // response to hypoxia // inferred from direct assay /// 0002328 // pro-B cell differentiation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007507 // heart development // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0030217 // T cell differentiation // not recorded /// 0031017 // exocrine pancreas development // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0050821 // protein stabilization // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded 1375258_at AW531857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531857 /DB_XREF=gi:7174271 /DB_XREF=UI-R-BS0-amj-a-11-0-UI.s1 /CLONE=UI-R-BS0-amj-a-11-0-UI /FEA=EST /CNT=13 /TID=Rn.32936.2 /TIER=Stack /STK=12 /UG=Rn.32936 /LL=64186 /UG_GENE=Ascl1 /UG_TITLE=achaete-scute complex (Drosophila) homolog-like 1 AW531857 Achaete-scute complex homolog 1 (Drosophila) Ascl1 64186 NM_022384 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0003359 // noradrenergic neuron fate commitment // inferred from electronic annotation /// 0003359 // noradrenergic neuron fate commitment // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0007219 // Notch signaling pathway // not recorded /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007399 // nervous system development // inferred from direct assay /// 0007399 // nervous system development // inferred from electronic annotation /// 0007400 // neuroblast fate determination // inferred from electronic annotation /// 0007400 // neuroblast fate determination // not recorded /// 0007405 // neuroblast proliferation // inferred from electronic annotation /// 0007405 // neuroblast proliferation // not recorded /// 0008593 // regulation of Notch signaling pathway // not recorded /// 0008593 // regulation of Notch signaling pathway // inferred from electronic annotation /// 0010001 // glial cell differentiation // not recorded /// 0010001 // glial cell differentiation // inferred from electronic annotation /// 0010226 // response to lithium ion // inferred from expression pattern /// 0010468 // regulation of gene expression // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0014003 // oligodendrocyte development // inferred from electronic annotation /// 0014003 // oligodendrocyte development // not recorded /// 0021527 // spinal cord association neuron differentiation // inferred from electronic annotation /// 0021527 // spinal cord association neuron differentiation // not recorded /// 0021529 // spinal cord oligodendrocyte cell differentiation // not recorded /// 0021529 // spinal cord oligodendrocyte cell differentiation // inferred from electronic annotation /// 0021530 // spinal cord oligodendrocyte cell fate specification // inferred from electronic annotation /// 0021530 // spinal cord oligodendrocyte cell fate specification // not recorded /// 0021779 // oligodendrocyte cell fate commitment // inferred from electronic annotation /// 0021779 // oligodendrocyte cell fate commitment // not recorded /// 0021879 // forebrain neuron differentiation // inferred from direct assay /// 0021892 // cerebral cortex GABAergic interneuron differentiation // inferred from electronic annotation /// 0021892 // cerebral cortex GABAergic interneuron differentiation // not recorded /// 0021954 // central nervous system neuron development // inferred from electronic annotation /// 0021954 // central nervous system neuron development // not recorded /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0021987 // cerebral cortex development // not recorded /// 0022008 // neurogenesis // not recorded /// 0022008 // neurogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032526 // response to retinoic acid // not recorded /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032582 // negative regulation of gene-specific transcription // inferred from electronic annotation /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from direct assay /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from direct assay /// 0045747 // positive regulation of Notch signaling pathway // inferred from electronic annotation /// 0045747 // positive regulation of Notch signaling pathway // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048663 // neuron fate commitment // not recorded /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048665 // neuron fate specification // inferred from electronic annotation /// 0048665 // neuron fate specification // not recorded /// 0048666 // neuron development // not recorded /// 0048666 // neuron development // inferred from electronic annotation /// 0048709 // oligodendrocyte differentiation // not recorded /// 0048709 // oligodendrocyte differentiation // inferred from electronic annotation /// 0050769 // positive regulation of neurogenesis // inferred from electronic annotation /// 0050769 // positive regulation of neurogenesis // not recorded /// 0051593 // response to folic acid // inferred from expression pattern /// 0060163 // subpallium neuron fate commitment // inferred from electronic annotation /// 0060163 // subpallium neuron fate commitment // not recorded /// 0060165 // regulation of timing of subpallium neuron differentiation // inferred from electronic annotation /// 0060165 // regulation of timing of subpallium neuron differentiation // not recorded /// 0060166 // olfactory pit development // inferred from electronic annotation /// 0060166 // olfactory pit development // not recorded /// 0061100 // lung neuroendocrine cell differentiation // inferred from electronic annotation /// 0061100 // lung neuroendocrine cell differentiation // not recorded /// 0061102 // stomach neuroendocrine cell differentiation // inferred from electronic annotation /// 0061102 // stomach neuroendocrine cell differentiation // not recorded /// 0061103 // carotid body glomus cell differentiation // inferred from electronic annotation /// 0061103 // carotid body glomus cell differentiation // not recorded /// 0061104 // adrenal chromaffin cell differentiation // inferred from electronic annotation /// 0061104 // adrenal chromaffin cell differentiation // not recorded /// 0070849 // response to epidermal growth factor stimulus // inferred from expression pattern /// 0071259 // cellular response to magnetism // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043425 // bHLH transcription factor binding // inferred from electronic annotation /// 0043425 // bHLH transcription factor binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0070888 // E-box binding // inferred from electronic annotation /// 0070888 // E-box binding // not recorded 1375259_at BF419161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419161 /DB_XREF=gi:11407191 /DB_XREF=UI-R-BJ2-bqo-g-09-0-UI.s1 /CLONE=UI-R-BJ2-bqo-g-09-0-UI /FEA=EST /CNT=13 /TID=Rn.24129.1 /TIER=Stack /STK=12 /UG=Rn.24129 /UG_TITLE=ESTs BF419161 eukaryotic translation initiation factor 4E binding protein 2 Eif4ebp2 361845 NM_001033069 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // not recorded /// 0019933 // cAMP-mediated signaling // inferred from electronic annotation /// 0019933 // cAMP-mediated signaling // not recorded /// 0045947 // negative regulation of translational initiation // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008190 // eukaryotic initiation factor 4E binding // inferred from electronic annotation 1375260_at BF405917 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405917 /DB_XREF=gi:11393892 /DB_XREF=UI-R-CA1-bii-e-08-0-UI.s1 /CLONE=UI-R-CA1-bii-e-08-0-UI /FEA=EST /CNT=12 /TID=Rn.62840.1 /TIER=Stack /STK=12 /UG=Rn.62840 /UG_TITLE=ESTs BF405917 Mitochondrial translational release factor 1-like Mtrf1l 361473 NM_001025723 0006412 // translation // inferred from electronic annotation /// 0006415 // translational termination // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003747 // translation release factor activity // inferred from electronic annotation /// 0016149 // translation release factor activity, codon specific // inferred from electronic annotation 1375261_at AI011360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011360 /DB_XREF=gi:3225192 /DB_XREF=EST205811 /CLONE=ROVAT83 /FEA=EST /CNT=12 /TID=Rn.17429.1 /TIER=Stack /STK=12 /UG=Rn.17429 /UG_TITLE=ESTs, Highly similar to A54407 alpha-mannosidase (M.musculus) AI011360 Mannosidase, alpha, class 1A, member 2 Man1a2 295319 NM_001106452 0007585 // respiratory gaseous exchange // not recorded /// 0009100 // glycoprotein metabolic process // not recorded /// 0048286 // lung alveolus development // not recorded 0000139 // Golgi membrane // not recorded 1375262_at AW252715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252715 /DB_XREF=gi:6596306 /DB_XREF=UI-R-BJ0-aeb-g-02-0-UI.s1 /CLONE=UI-R-BJ0-aeb-g-02-0-UI /FEA=EST /CNT=12 /TID=Rn.44718.1 /TIER=Stack /STK=12 /UG=Rn.44718 /UG_TITLE=ESTs, Weakly similar to T2D3_HUMAN TRANSCRIPTION INITIATION FACTOR TFIID 135 KDA SUBUNIT (H.sapiens) AW252715 EGL nine homolog 1 (C. elegans) Egln1 308913 XM_002725436 /// XM_002728611 0001666 // response to hypoxia // inferred from direct assay /// 0001666 // response to hypoxia // not recorded /// 0032364 // oxygen homeostasis // not recorded /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0055008 // cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055008 // cardiac muscle tissue morphogenesis // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060347 // heart trabecula formation // inferred from electronic annotation /// 0060347 // heart trabecula formation // not recorded /// 0060412 // ventricular septum morphogenesis // inferred from electronic annotation /// 0060412 // ventricular septum morphogenesis // not recorded /// 0060711 // labyrinthine layer development // inferred from electronic annotation /// 0060711 // labyrinthine layer development // not recorded 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375263_at BI296498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296498 /DB_XREF=gi:14960980 /DB_XREF=UI-R-CV2-cgr-h-08-0-UI.s1 /CLONE=UI-R-CV2-cgr-h-08-0-UI /FEA=EST /CNT=12 /TID=Rn.66328.1 /TIER=Stack /STK=12 /UG=Rn.66328 /UG_TITLE=ESTs BI296498 1375264_at BF416264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416264 /DB_XREF=gi:11404253 /DB_XREF=UI-R-CA0-bkr-d-08-0-UI.s1 /CLONE=UI-R-CA0-bkr-d-08-0-UI /FEA=EST /CNT=12 /TID=Rn.51480.1 /TIER=Stack /STK=12 /UG=Rn.51480 /UG_TITLE=ESTs BF416264 1375265_at BI298086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298086 /DB_XREF=gi:14974366 /DB_XREF=UI-R-CV2-chf-c-02-0-UI.s1 /CLONE=UI-R-CV2-chf-c-02-0-UI /FEA=EST /CNT=12 /TID=Rn.79915.1 /TIER=Stack /STK=12 /UG=Rn.79915 /UG_TITLE=ESTs BI298086 1375266_at BG380633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380633 /DB_XREF=gi:13305105 /DB_XREF=UI-R-CT0-btz-f-02-0-UI.s1 /CLONE=UI-R-CT0-btz-f-02-0-UI /FEA=EST /CNT=32 /TID=Rn.4229.1 /TIER=Stack /STK=11 /UG=Rn.4229 /UG_TITLE=ESTs BG380633 1375267_at BI291292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291292 /DB_XREF=gi:14950694 /DB_XREF=UI-R-CV2-cgn-h-07-0-UI.s1 /CLONE=UI-R-CV2-cgn-h-07-0-UI /FEA=EST /CNT=23 /TID=Rn.43090.1 /TIER=Stack /STK=11 /UG=Rn.43090 /UG_TITLE=ESTs, Weakly similar to cyclophilin B (R.norvegicus) BI291292 peptidylprolyl isomerase C Ppic 291463 NM_001004215 0006457 // protein folding // inferred from electronic annotation 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0016018 // cyclosporin A binding // traceable author statement /// 0016853 // isomerase activity // inferred from electronic annotation 1375268_at AA858591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858591 /DB_XREF=gi:4229923 /DB_XREF=UI-R-E0-bq-g-12-0-UI.s1 /CLONE=UI-R-E0-bq-g-12-0-UI /FEA=EST /CNT=15 /TID=Rn.34330.1 /TIER=Stack /STK=11 /UG=Rn.34330 /UG_TITLE=ESTs, Highly similar to RS27 RAT 40S RIBOSOMAL PROTEIN S27 (R.norvegicus) AA858591 1375269_at BM391516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391516 /DB_XREF=gi:18191569 /DB_XREF=UI-R-DY0-ckr-g-16-0-UI.s1 /CLONE=UI-R-DY0-ckr-g-16-0-UI /FEA=EST /CNT=17 /TID=Rn.17191.1 /TIER=Stack /STK=11 /UG=Rn.17191 /UG_TITLE=ESTs, Weakly similar to Deoxyribose-phosphate aldolase (Caenorhabditis elegans) (C.elegans) BM391516 1375270_at BM384026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384026 /DB_XREF=gi:18184079 /DB_XREF=UI-R-DM1-ckb-i-02-0-UI.s1 /CLONE=UI-R-DM1-ckb-i-02-0-UI /FEA=EST /CNT=15 /TID=Rn.22376.1 /TIER=Stack /STK=11 /UG=Rn.22376 /UG_TITLE=ESTs BM384026 1375271_at BE118382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118382 /DB_XREF=gi:8510487 /DB_XREF=UI-R-BJ1-azp-a-04-0-UI.s1 /CLONE=UI-R-BJ1-azp-a-04-0-UI /FEA=EST /CNT=14 /TID=Rn.4009.1 /TIER=Stack /STK=11 /UG=Rn.4009 /UG_TITLE=ESTs, Weakly similar to T14317 rjs protein - mouse (M.musculus) BE118382 NIMA (never in mitosis gene a)- related kinase 9 Nek9 299204 NM_001106747 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1375272_at BE113423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113423 /DB_XREF=gi:8505528 /DB_XREF=UI-R-BJ1-awl-b-10-0-UI.s1 /CLONE=UI-R-BJ1-awl-b-10-0-UI /FEA=EST /CNT=15 /TID=Rn.4091.1 /TIER=Stack /STK=11 /UG=Rn.4091 /UG_TITLE=ESTs BE113423 1375273_at AW251625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251625 /DB_XREF=gi:6595216 /DB_XREF=UI-R-BJ0-adp-a-03-0-UI.s1 /CLONE=UI-R-BJ0-adp-a-03-0-UI /FEA=EST /CNT=15 /TID=Rn.41378.1 /TIER=Stack /STK=11 /UG=Rn.41378 /UG_TITLE=ESTs, Weakly similar to Z147_MOUSE Zinc finger protein 147 (Estrogen responsive finger protein) (Efp) (M.musculus) AW251625 tripartite motif-containing 47 Trim47 690374 NM_001109585 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375274_at BF281898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281898 /DB_XREF=gi:11212968 /DB_XREF=EST446489 /CLONE=RGIBH78 /FEA=EST /CNT=13 /TID=Rn.8099.2 /TIER=Stack /STK=11 /UG=Rn.8099 /LL=83617 /UG_GENE=Hipk3 /UG_TITLE=homeodomain-interacting protein kinase 3 BF281898 Homeodomain interacting protein kinase 3 Hipk3 83617 NM_031787 0006350 // transcription // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0018107 // peptidyl-threonine phosphorylation // not recorded /// 0043508 // negative regulation of JUN kinase activity // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016605 // PML body // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1375275_at AA850745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850745 /DB_XREF=gi:2938285 /DB_XREF=EST193513 /CLONE=ROVAK31 /FEA=EST /CNT=13 /TID=Rn.4148.1 /TIER=Stack /STK=11 /UG=Rn.4148 /UG_TITLE=ESTs AA850745 Similar to sin3 associated polypeptide LOC680122 680122 XM_001055813 1375276_at BI274139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274139 /DB_XREF=gi:14884781 /DB_XREF=UI-R-CW0-bwf-d-10-0-UI.s1 /CLONE=UI-R-CW0-bwf-d-10-0-UI /FEA=EST /CNT=14 /TID=Rn.17528.1 /TIER=Stack /STK=11 /UG=Rn.17528 /UG_TITLE=ESTs, Weakly similar to IM17 RAT MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM17 A (R.norvegicus) BI274139 translocase of inner mitochondrial membrane 17 homolog B (yeast) Timm17b 317374 NM_001108249 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005744 // mitochondrial inner membrane presequence translocase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008565 // protein transporter activity // inferred from electronic annotation /// 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from electronic annotation 1375277_at AA800680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800680 /DB_XREF=gi:4131527 /DB_XREF=EST190177 /CLONE=RLUAK23 /FEA=EST /CNT=13 /TID=Rn.22790.1 /TIER=Stack /STK=11 /UG=Rn.22790 /UG_TITLE=ESTs, Weakly similar to S68418 protein phosphatase 1M chain M110 isoform - rat (R.norvegicus) AA800680 Notch-regulated ankyrin repeat protein Nrarp 499745 NM_001143750 1375278_at BG670916 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670916 /DB_XREF=gi:13893015 /DB_XREF=DRNBIE09 /CLONE=DRNBIE09 /FEA=EST /CNT=12 /TID=Rn.24843.1 /TIER=Stack /STK=11 /UG=Rn.24843 /UG_TITLE=ESTs BG670916 tripartite motif-containing 2 Trim2 361970 NM_001108552 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375279_at BI295862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295862 /DB_XREF=gi:14959733 /DB_XREF=UI-R-DK0-cfb-e-09-0-UI.s1 /CLONE=UI-R-DK0-cfb-e-09-0-UI /FEA=EST /CNT=12 /TID=Rn.15977.1 /TIER=Stack /STK=11 /UG=Rn.15977 /UG_TITLE=ESTs, Moderately similar to Y127_HUMAN HYPOTHETICAL PROTEIN KIAA0127 (H.sapiens) BI295862 SERTA domain containing 2 Sertad2 498423 NM_001024903 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation 1375280_at AW913871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW913871 /DB_XREF=gi:8079583 /DB_XREF=EST292212 /CLONE=RGIZB56 /FEA=EST /CNT=12 /TID=Rn.9401.1 /TIER=Stack /STK=11 /UG=Rn.9401 /UG_TITLE=ESTs, Weakly similar to T29315 hypothetical protein F36D4.5 - Caenorhabditis elegans (C.elegans) AW913871 PPPDE peptidase domain containing 1 Pppde1 289277 NM_001013873 1375281_at AW533332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533332 /DB_XREF=gi:7175746 /DB_XREF=UI-R-BU0-anf-f-05-0-UI.s1 /CLONE=UI-R-BU0-anf-f-05-0-UI /FEA=EST /CNT=12 /TID=Rn.23104.1 /TIER=Stack /STK=11 /UG=Rn.23104 /UG_TITLE=ESTs, Highly similar to TBX2 PROTEIN (M.musculus) AW533332 T-box 2 Tbx2 303398 NM_001107033 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007521 // muscle cell fate determination // not recorded /// 0007569 // cell aging // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0048738 // cardiac muscle tissue development // not recorded /// 0060596 // mammary placode formation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // not recorded 1375282_at BM391433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391433 /DB_XREF=gi:18191486 /DB_XREF=UI-R-DY0-ckr-e-05-0-UI.s1 /CLONE=UI-R-DY0-ckr-e-05-0-UI /FEA=EST /CNT=12 /TID=Rn.38633.1 /TIER=Stack /STK=11 /UG=Rn.38633 /UG_TITLE=ESTs BM391433 cerebral cavernous malformation 2 Ccm2 305505 NM_001126275 0001570 // vasculogenesis // not recorded 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded 1375283_at AA965236 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965236 /DB_XREF=gi:4280110 /DB_XREF=UI-R-C0-gz-h-06-0-UI.s1 /CLONE=UI-R-C0-gz-h-06-0-UI /FEA=EST /CNT=14 /TID=Rn.8673.1 /TIER=Stack /STK=11 /UG=Rn.8673 /UG_TITLE=ESTs, Weakly similar to JC5621 epidermal growth factor-like protein, T16 precursor - rat (R.norvegicus) AA965236 Signal peptide, CUB domain, EGF-like 1 Scube1 315174 NM_001134884 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0019897 // extrinsic to plasma membrane // inferred from electronic annotation /// 0019897 // extrinsic to plasma membrane // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1375284_at BF408956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408956 /DB_XREF=gi:11396931 /DB_XREF=UI-R-BJ2-bpn-d-05-0-UI.s1 /CLONE=UI-R-BJ2-bpn-d-05-0-UI /FEA=EST /CNT=13 /TID=Rn.22176.2 /TIER=Stack /STK=11 /UG=Rn.22176 /LL=84353 /UG_GENE=Catnb /UG_TITLE=beta-catenin BF408956 Catenin (cadherin associated protein), beta 1 Ctnnb1 84353 NM_053357 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000578 // embryonic axis specification // not recorded /// 0000904 // cell morphogenesis involved in differentiation // inferred from electronic annotation /// 0000904 // cell morphogenesis involved in differentiation // not recorded /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // not recorded /// 0001706 // endoderm formation // not recorded /// 0001706 // endoderm formation // inferred from electronic annotation /// 0001708 // cell fate specification // inferred from electronic annotation /// 0001708 // cell fate specification // not recorded /// 0001709 // cell fate determination // not recorded /// 0001709 // cell fate determination // inferred from electronic annotation /// 0001711 // endodermal cell fate commitment // inferred from electronic annotation /// 0001711 // endodermal cell fate commitment // not recorded /// 0001822 // kidney development // not recorded /// 0001889 // liver development // inferred from expression pattern /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0003337 // mesenchymal to epithelial transition involved in metanephros morphogenesis // not recorded /// 0003338 // metanephros morphogenesis // inferred from electronic annotation /// 0003338 // metanephros morphogenesis // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007398 // ectoderm development // inferred from electronic annotation /// 0007398 // ectoderm development // not recorded /// 0007403 // glial cell fate determination // inferred from electronic annotation /// 0007403 // glial cell fate determination // not recorded /// 0007494 // midgut development // inferred from expression pattern /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0009948 // anterior/posterior axis specification // inferred from electronic annotation /// 0009948 // anterior/posterior axis specification // not recorded /// 0009950 // dorsal/ventral axis specification // inferred from electronic annotation /// 0009950 // dorsal/ventral axis specification // not recorded /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // not recorded /// 0009987 // cellular process // inferred from electronic annotation /// 0009987 // cellular process // not recorded /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010628 // positive regulation of gene expression // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0010909 // positive regulation of heparan sulfate proteoglycan biosynthetic process // inferred from electronic annotation /// 0010909 // positive regulation of heparan sulfate proteoglycan biosynthetic process // not recorded /// 0014010 // Schwann cell proliferation // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // not recorded /// 0016337 // cell-cell adhesion // inferred from direct assay /// 0016337 // cell-cell adhesion // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // inferred from sequence or structural similarity /// 0022009 // central nervous system vasculogenesis // not recorded /// 0022405 // hair cycle process // not recorded /// 0022405 // hair cycle process // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030217 // T cell differentiation // not recorded /// 0030217 // T cell differentiation // inferred from electronic annotation /// 0030316 // osteoclast differentiation // not recorded /// 0030316 // osteoclast differentiation // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030539 // male genitalia development // not recorded /// 0030856 // regulation of epithelial cell differentiation // not recorded /// 0030856 // regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030858 // positive regulation of epithelial cell differentiation // not recorded /// 0030858 // positive regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0030997 // regulation of centriole-centriole cohesion // inferred from electronic annotation /// 0030997 // regulation of centriole-centriole cohesion // not recorded /// 0031016 // pancreas development // inferred from electronic annotation /// 0031016 // pancreas development // not recorded /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // not recorded /// 0032331 // negative regulation of chondrocyte differentiation // inferred from electronic annotation /// 0032331 // negative regulation of chondrocyte differentiation // not recorded /// 0032355 // response to estradiol stimulus // not recorded /// 0033077 // T cell differentiation in thymus // inferred from electronic annotation /// 0033077 // T cell differentiation in thymus // not recorded /// 0034097 // response to cytokine stimulus // inferred from direct assay /// 0034333 // adherens junction assembly // not recorded /// 0034394 // protein localization at cell surface // not recorded /// 0034613 // cellular protein localization // inferred from electronic annotation /// 0034613 // cellular protein localization // not recorded /// 0035050 // embryonic heart tube development // inferred from electronic annotation /// 0035050 // embryonic heart tube development // not recorded /// 0035112 // genitalia morphogenesis // inferred from electronic annotation /// 0035112 // genitalia morphogenesis // not recorded /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0035117 // embryonic arm morphogenesis // inferred from electronic annotation /// 0035117 // embryonic arm morphogenesis // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042129 // regulation of T cell proliferation // inferred from electronic annotation /// 0042129 // regulation of T cell proliferation // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from expression pattern /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0043587 // tongue morphogenesis // not recorded /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0045445 // myoblast differentiation // inferred from expression pattern /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045453 // bone resorption // inferred from electronic annotation /// 0045453 // bone resorption // not recorded /// 0045595 // regulation of cell differentiation // not recorded /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045603 // positive regulation of endothelial cell differentiation // inferred from electronic annotation /// 0045603 // positive regulation of endothelial cell differentiation // not recorded /// 0045667 // regulation of osteoblast differentiation // not recorded /// 0045667 // regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045670 // regulation of osteoclast differentiation // not recorded /// 0045670 // regulation of osteoclast differentiation // inferred from electronic annotation /// 0045671 // negative regulation of osteoclast differentiation // inferred from electronic annotation /// 0045671 // negative regulation of osteoclast differentiation // not recorded /// 0045743 // positive regulation of fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0045743 // positive regulation of fibroblast growth factor receptor signaling pathway // not recorded /// 0045768 // positive regulation of anti-apoptosis // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded /// 0048489 // synaptic vesicle transport // inferred from electronic annotation /// 0048489 // synaptic vesicle transport // not recorded /// 0048513 // organ development // not recorded /// 0048513 // organ development // inferred from electronic annotation /// 0048538 // thymus development // inferred from electronic annotation /// 0048538 // thymus development // not recorded /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // not recorded /// 0048599 // oocyte development // not recorded /// 0048617 // embryonic foregut morphogenesis // inferred from electronic annotation /// 0048617 // embryonic foregut morphogenesis // not recorded /// 0048660 // regulation of smooth muscle cell proliferation // not recorded /// 0050808 // synapse organization // inferred from electronic annotation /// 0050808 // synapse organization // not recorded /// 0050909 // sensory perception of taste // not recorded /// 0051145 // smooth muscle cell differentiation // not recorded /// 0051291 // protein heterooligomerization // inferred from physical interaction /// 0060066 // fallopian tube development // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060173 // limb development // not recorded /// 0060439 // trachea morphogenesis // not recorded /// 0060439 // trachea morphogenesis // inferred from electronic annotation /// 0060440 // trachea formation // inferred from electronic annotation /// 0060440 // trachea formation // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // inferred from electronic annotation /// 0060479 // lung cell differentiation // inferred from electronic annotation /// 0060479 // lung cell differentiation // not recorded /// 0060484 // lung-associated mesenchyme development // inferred from electronic annotation /// 0060484 // lung-associated mesenchyme development // not recorded /// 0060492 // lung induction // inferred from electronic annotation /// 0060492 // lung induction // not recorded /// 0060742 // epithelial cell differentiation involved in prostate gland development // inferred from electronic annotation /// 0060742 // epithelial cell differentiation involved in prostate gland development // not recorded /// 0060769 // positive regulation of epithelial cell proliferation involved in prostate gland development // inferred from electronic annotation /// 0060769 // positive regulation of epithelial cell proliferation involved in prostate gland development // not recorded /// 0060789 // hair follicle placode formation // inferred from electronic annotation /// 0060789 // hair follicle placode formation // not recorded /// 0060916 // mesenchymal cell proliferation involved in lung development // inferred from electronic annotation /// 0060916 // mesenchymal cell proliferation involved in lung development // not recorded /// 0061047 // positive regulation of branching involved in lung morphogenesis // inferred from electronic annotation /// 0061047 // positive regulation of branching involved in lung morphogenesis // not recorded /// 0061154 // endothelial tube morphogenesis // not recorded /// 0070602 // regulation of centromeric sister chromatid cohesion // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // not recorded /// 0071407 // cellular response to organic cyclic substance // not recorded /// 0071681 // cellular response to indole-3-methanol // inferred from electronic annotation /// 0071681 // cellular response to indole-3-methanol // not recorded /// 0072001 // renal system development // inferred from electronic annotation /// 0072001 // renal system development // not recorded /// 0072033 // renal vesicle formation // not recorded /// 0072053 // renal inner medulla development // inferred from electronic annotation /// 0072053 // renal inner medulla development // not recorded /// 0072054 // renal outer medulla development // inferred from electronic annotation /// 0072054 // renal outer medulla development // not recorded /// 0072079 // nephron tubule formation // not recorded /// 0090279 // regulation of calcium ion import // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0005913 // cell-cell adherens junction // not recorded /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005916 // fascia adherens // inferred from electronic annotation /// 0005916 // fascia adherens // not recorded /// 0005924 // cell-substrate adherens junction // not recorded /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016328 // lateral plasma membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // not recorded /// 0016342 // catenin complex // inferred from electronic annotation /// 0016342 // catenin complex // not recorded /// 0030018 // Z disc // inferred from electronic annotation /// 0030018 // Z disc // not recorded /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030054 // cell junction // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030877 // beta-catenin destruction complex // inferred from electronic annotation /// 0031253 // cell projection membrane // not recorded /// 0031253 // cell projection membrane // inferred from electronic annotation /// 0031528 // microvillus membrane // inferred from electronic annotation /// 0031528 // microvillus membrane // not recorded /// 0032993 // protein-DNA complex // inferred from electronic annotation /// 0032993 // protein-DNA complex // not recorded /// 0034747 // Axin-APC-beta-catenin-GSK3B complex // inferred from electronic annotation /// 0034747 // Axin-APC-beta-catenin-GSK3B complex // not recorded /// 0043005 // neuron projection // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0043296 // apical junction complex // inferred from electronic annotation /// 0043296 // apical junction complex // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded /// 0045202 // synapse // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0070369 // beta-catenin-TCF7L2 complex // inferred from electronic annotation /// 0070369 // beta-catenin-TCF7L2 complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003704 // specific RNA polymerase II transcription factor activity // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019900 // kinase binding // inferred from electronic annotation /// 0019900 // kinase binding // not recorded /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // not recorded /// 0030331 // estrogen receptor binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction /// 0035257 // nuclear hormone receptor binding // not recorded /// 0045294 // alpha-catenin binding // inferred from electronic annotation /// 0045294 // alpha-catenin binding // not recorded /// 0045296 // cadherin binding // inferred from direct assay /// 0045296 // cadherin binding // inferred from physical interaction /// 0045296 // cadherin binding // not recorded /// 0045296 // cadherin binding // inferred from electronic annotation /// 0046332 // SMAD binding // not recorded /// 0046332 // SMAD binding // inferred from electronic annotation /// 0070411 // I-SMAD binding // inferred from electronic annotation /// 0070411 // I-SMAD binding // not recorded /// 0070412 // R-SMAD binding // not recorded /// 0070491 // transcription repressor binding // inferred from electronic annotation /// 0070491 // transcription repressor binding // not recorded 1375285_at AI407169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407169 /DB_XREF=gi:4250673 /DB_XREF=EST235457 /CLONE=ROVDS25 /FEA=EST /CNT=12 /TID=Rn.17127.1 /TIER=Stack /STK=11 /UG=Rn.17127 /UG_TITLE=ESTs AI407169 Interleukin 17D Il17d 691799 XM_001079675 1375286_at BF403823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403823 /DB_XREF=gi:11391798 /DB_XREF=UI-R-CA1-bix-f-05-0-UI.s1 /CLONE=UI-R-CA1-bix-f-05-0-UI /FEA=EST /CNT=11 /TID=Rn.62831.1 /TIER=Stack /STK=11 /UG=Rn.62831 /UG_TITLE=ESTs BF403823 1375287_at BI299020 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299020 /DB_XREF=gi:14975300 /DB_XREF=UI-R-CV2-chq-c-06-0-UI.s1 /CLONE=UI-R-CV2-chq-c-06-0-UI /FEA=EST /CNT=11 /TID=Rn.73071.1 /TIER=Stack /STK=11 /UG=Rn.73071 /UG_TITLE=ESTs BI299020 1375288_at BI299737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299737 /DB_XREF=gi:14976017 /DB_XREF=UI-R-CV2-chw-f-07-0-UI.s1 /CLONE=UI-R-CV2-chw-f-07-0-UI /FEA=EST /CNT=11 /TID=Rn.73053.1 /TIER=Stack /STK=11 /UG=Rn.73053 /UG_TITLE=ESTs BI299737 GCN1 general control of amino-acid synthesis 1-like 1 (yeast) Gcn1l1 690632 NM_001168664 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375289_at BM387047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387047 /DB_XREF=gi:18187100 /DB_XREF=UI-R-CN1-cji-c-16-0-UI.s1 /CLONE=UI-R-CN1-cji-c-16-0-UI /FEA=EST /CNT=11 /TID=Rn.24138.1 /TIER=Stack /STK=11 /UG=Rn.24138 /UG_TITLE=ESTs BM387047 1375290_at AW525160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525160 /DB_XREF=gi:7167545 /DB_XREF=UI-R-BJ0p-aio-e-02-0-UI.s1 /CLONE=UI-R-BJ0p-aio-e-02-0-UI /FEA=EST /CNT=11 /TID=Rn.9394.1 /TIER=Stack /STK=11 /UG=Rn.9394 /UG_TITLE=ESTs AW525160 Similar to RNA binding motif protein 24 LOC690139 690139 NM_001191100 /// XM_001073426 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1375291_at AA957992 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957992 /DB_XREF=gi:4277882 /DB_XREF=UI-R-E1-gc-f-04-0-UI.s1 /CLONE=UI-R-E1-gc-f-04-0-UI /FEA=EST /CNT=11 /TID=Rn.9464.1 /TIER=Stack /STK=11 /UG=Rn.9464 /UG_TITLE=ESTs AA957992 Similar to Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) LOC502710 502710 XR_006158 1375292_at BF405916 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405916 /DB_XREF=gi:11393891 /DB_XREF=UI-R-CA1-bii-e-07-0-UI.s1 /CLONE=UI-R-CA1-bii-e-07-0-UI /FEA=EST /CNT=11 /TID=Rn.64354.1 /TIER=Stack /STK=11 /UG=Rn.64354 /UG_TITLE=ESTs BF405916 1375293_at BE107875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107875 /DB_XREF=gi:8499980 /DB_XREF=UI-R-CA0-awx-h-01-0-UI.s1 /CLONE=UI-R-CA0-awx-h-01-0-UI /FEA=EST /CNT=11 /TID=Rn.51203.1 /TIER=Stack /STK=11 /UG=Rn.51203 /UG_TITLE=ESTs BE107875 1375294_at BF415950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415950 /DB_XREF=gi:11403939 /DB_XREF=UI-R-CA0-bkp-c-06-0-UI.s1 /CLONE=UI-R-CA0-bkp-c-06-0-UI /FEA=EST /CNT=11 /TID=Rn.53820.1 /TIER=Stack /STK=11 /UG=Rn.53820 /UG_TITLE=ESTs, Weakly similar to S16788 probable reverse transcriptase - rat (R.norvegicus) BF415950 1375295_at AI009657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009657 /DB_XREF=gi:3223489 /DB_XREF=EST204108 /CLONE=RLUBG87 /FEA=EST /CNT=41 /TID=Rn.30170.1 /TIER=Stack /STK=10 /UG=Rn.30170 /UG_TITLE=ESTs AI009657 1375296_at AI407178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407178 /DB_XREF=gi:4250682 /DB_XREF=EST235466 /CLONE=ROVDS09 /FEA=EST /CNT=41 /TID=Rn.873.1 /TIER=Stack /STK=10 /UG=Rn.873 /UG_TITLE=ESTs, Highly similar to SNX3_MOUSE SORTING NEXIN 3 (SDP3 PROTEIN) (M.musculus) AI407178 similar to sorting nexin 3 LOC684097 684097 NM_001044283 0006810 // transport // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from sequence or structural similarity /// 0005769 // early endosome // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from sequence or structural similarity /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1375297_at AI168968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI168968 /DB_XREF=gi:3705276 /DB_XREF=EST214796 /CLONE=RKIBL30 /FEA=EST /CNT=23 /TID=Rn.2579.1 /TIER=Stack /STK=10 /UG=Rn.2579 /UG_TITLE=ESTs AI168968 1375298_at BF408443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408443 /DB_XREF=gi:11396418 /DB_XREF=UI-R-BJ2-brc-g-09-0-UI.s1 /CLONE=UI-R-BJ2-brc-g-09-0-UI /FEA=EST /CNT=29 /TID=Rn.6485.1 /TIER=Stack /STK=10 /UG=Rn.6485 /UG_TITLE=ESTs BF408443 1375299_at AI103331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103331 /DB_XREF=gi:3707886 /DB_XREF=EST212620 /CLONE=REMCA72 /FEA=EST /CNT=21 /TID=Rn.4211.1 /TIER=Stack /STK=10 /UG=Rn.4211 /UG_TITLE=ESTs, Weakly similar to JC5707 HYA22 protein (H.sapiens) AI103331 Dullard homolog (Xenopus laevis) Dullard 287447 NM_001100494 /// XM_001079431 /// XM_001080620 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0006998 // nuclear envelope organization // not recorded /// 0006998 // nuclear envelope organization // inferred from sequence or structural similarity /// 0006998 // nuclear envelope organization // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005635 // nuclear envelope // inferred from sequence or structural similarity /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // not recorded /// 0004722 // protein serine/threonine phosphatase activity // inferred from sequence or structural similarity /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1375300_at AI235878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235878 /DB_XREF=gi:3829384 /DB_XREF=EST232440 /CLONE=ROVCY13 /FEA=EST /CNT=15 /TID=Rn.18103.2 /TIER=Stack /STK=10 /UG=Rn.18103 /LL=116477 /UG_GENE=Prkwnk1 /UG_TITLE=protein kinase, lysine deficient 1 AI235878 similar to ribosomal protein S12 LOC680988 680988 XM_001061208 /// XM_002726481 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1375301_at BI284322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284322 /DB_XREF=gi:14936891 /DB_XREF=UI-R-CX0s-ccq-g-10-0-UI.s1 /CLONE=UI-R-CX0s-ccq-g-10-0-UI /FEA=EST /CNT=14 /TID=Rn.3973.3 /TIER=Stack /STK=10 /UG=Rn.3973 /LL=29283 /UG_GENE=Rpl29 /UG_TITLE=ribosomal protein L29 BI284322 heart and neural crest derivatives expressed 1 /// rCG54380-like Hand1 /// LOC100360737 100360737 /// 59112 NM_021592 /// XM_002725537 /// XM_002728697 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001525 // angiogenesis // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0001707 // mesoderm formation // not recorded /// 0001824 // blastocyst development // inferred from electronic annotation /// 0001824 // blastocyst development // not recorded /// 0001829 // trophectodermal cell differentiation // inferred from electronic annotation /// 0001829 // trophectodermal cell differentiation // not recorded /// 0001947 // heart looping // not recorded /// 0003218 // cardiac left ventricle formation // inferred from electronic annotation /// 0003218 // cardiac left ventricle formation // not recorded /// 0003219 // cardiac right ventricle formation // inferred from electronic annotation /// 0003219 // cardiac right ventricle formation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0030154 // cell differentiation // not recorded /// 0035050 // embryonic heart tube development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0060411 // cardiac septum morphogenesis // inferred from electronic annotation /// 0060411 // cardiac septum morphogenesis // not recorded /// 0060707 // trophoblast giant cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // traceable author statement /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0043425 // bHLH transcription factor binding // inferred from electronic annotation /// 0043425 // bHLH transcription factor binding // not recorded /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // traceable author statement 1375302_at BM384146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384146 /DB_XREF=gi:18184199 /DB_XREF=UI-R-DZ0-cks-n-21-0-UI.s1 /CLONE=UI-R-DZ0-cks-n-21-0-UI /FEA=EST /CNT=14 /TID=Rn.15836.1 /TIER=Stack /STK=10 /UG=Rn.15836 /UG_TITLE=ESTs BM384146 zinc finger and BTB domain containing 4 Zbtb4 287441 XM_001079524 /// XM_220612 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375303_at BI294983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294983 /DB_XREF=gi:14957972 /DB_XREF=UI-R-DK0-cee-d-08-0-UI.s1 /CLONE=UI-R-DK0-cee-d-08-0-UI /FEA=EST /CNT=13 /TID=Rn.17340.1 /TIER=Stack /STK=10 /UG=Rn.17340 /UG_TITLE=ESTs, Weakly similar to four and a half LIM domains 2 (Rattus norvegicus) (R.norvegicus) BI294983 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375304_at AA998659 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998659 /DB_XREF=gi:4291383 /DB_XREF=UI-R-C0-ig-d-03-0-UI.s1 /CLONE=UI-R-C0-ig-d-03-0-UI /FEA=EST /CNT=14 /TID=Rn.22147.1 /TIER=Stack /STK=10 /UG=Rn.22147 /UG_TITLE=ESTs AA998659 Abhydrolase domain containing 8 Abhd8 306338 NM_001107301 0003824 // catalytic activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1375305_at BI282028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282028 /DB_XREF=gi:14932371 /DB_XREF=UI-R-CU0s-cbv-f-01-0-UI.s1 /CLONE=UI-R-CU0s-cbv-f-01-0-UI /FEA=EST /CNT=12 /TID=Rn.16887.1 /TIER=Stack /STK=10 /UG=Rn.16887 /UG_TITLE=ESTs, Highly similar to SYNTAXIN 1B (R.norvegicus) BI282028 small nucleolar RNA host gene 11 Snhg11 362256 XM_001068561 /// XM_347038 1375306_at BI293698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293698 /DB_XREF=gi:14955443 /DB_XREF=UI-R-DK0-cdu-f-06-0-UI.s1 /CLONE=UI-R-DK0-cdu-f-06-0-UI /FEA=EST /CNT=12 /TID=Rn.4135.1 /TIER=Stack /STK=10 /UG=Rn.4135 /UG_TITLE=ESTs, Weakly similar to AF179370 1 insulin-like growth factor binding protein 5 protease (R.norvegicus) BI293698 HtrA serine peptidase 3 Htra3 360959 XM_001058037 /// XM_341237 0001558 // regulation of cell growth // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation 1375307_at BI275772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275772 /DB_XREF=gi:14920013 /DB_XREF=UI-R-CX0-bxg-d-12-0-UI.s1 /CLONE=UI-R-CX0-bxg-d-12-0-UI /FEA=EST /CNT=16 /TID=Rn.2924.1 /TIER=Stack /STK=10 /UG=Rn.2924 /UG_TITLE=ESTs BI275772 chromobox homolog 6 /// neuronal pentraxin receptor Cbx6 /// Nptxr 315136 /// 81005 NM_001012119 /// NM_030841 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from expression pattern 0000785 // chromatin // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003682 // chromatin binding // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0008029 // pentraxin receptor activity // inferred from direct assay /// 0032403 // protein complex binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1375308_at BM383330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383330 /DB_XREF=gi:18183383 /DB_XREF=UI-R-CV2-cia-e-03-0-UI.s2 /CLONE=UI-R-CV2-cia-e-03-0-UI /FEA=EST /CNT=12 /TID=Rn.27282.1 /TIER=Stack /STK=10 /UG=Rn.27282 /UG_TITLE=ESTs BM383330 1375309_at BI296631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296631 /DB_XREF=gi:14961246 /DB_XREF=UI-R-CV2-cgt-e-04-0-UI.s1 /CLONE=UI-R-CV2-cgt-e-04-0-UI /FEA=EST /CNT=11 /TID=Rn.37952.1 /TIER=Stack /STK=10 /UG=Rn.37952 /UG_TITLE=ESTs BI296631 1375310_at AI409746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409746 /DB_XREF=gi:4253250 /DB_XREF=EST238038 /CLONE=RPLDI17 /FEA=EST /CNT=11 /TID=Rn.8317.1 /TIER=Stack /STK=10 /UG=Rn.8317 /UG_TITLE=ESTs, Weakly similar to T27104 hypothetical protein Y52B11A.2 - Caenorhabditis elegans (C.elegans) AI409746 Imprinted and ancient Impact 497198 NM_001012235 0006417 // regulation of translation // inferred from electronic annotation 1375311_at AI575170 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575170 /DB_XREF=gi:4559546 /DB_XREF=UI-R-G0-un-c-10-0-UI.s1 /CLONE=UI-R-G0-un-c-10-0-UI /FEA=EST /CNT=11 /TID=Rn.2959.2 /TIER=Stack /STK=10 /UG=Rn.2959 /UG_TITLE=ESTs, Highly similar to vesicle-associated calmodulin-binding protein (Rattus norvegicus) (R.norvegicus) AI575170 1375312_at BF419911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419911 /DB_XREF=gi:11407900 /DB_XREF=UI-R-BJ2-bph-f-05-0-UI.s1 /CLONE=UI-R-BJ2-bph-f-05-0-UI /FEA=EST /CNT=11 /TID=Rn.41057.1 /TIER=Stack /STK=10 /UG=Rn.41057 /UG_TITLE=ESTs BF419911 1375313_at BF393156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393156 /DB_XREF=gi:11378016 /DB_XREF=UI-R-CA0-bfp-d-07-0-UI.s1 /CLONE=UI-R-CA0-bfp-d-07-0-UI /FEA=EST /CNT=11 /TID=Rn.806.3 /TIER=Stack /STK=10 /UG=Rn.806 /UG_TITLE=ESTs, Moderately similar to UBPI_MOUSE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 18 (UBIQUITIN THIOLESTERASE 18) (UBIQUITIN-SPECIFIC PROCESSING PROTEASE 18) (DEUBIQUITINATING ENZYME 18) (43 KDA UBIQUITIN-SPECIFIC PROTEASE) (M.musculus) BF393156 Microtubule associated serine/threonine kinase family member 4 Mast4 310040 XM_001063274 /// XM_226732 0006468 // protein phosphorylation // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1375314_at BF283490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283490 /DB_XREF=gi:11214560 /DB_XREF=EST448081 /CLONE=RGIED10 /FEA=EST /CNT=11 /TID=Rn.35445.1 /TIER=Stack /STK=10 /UG=Rn.35445 /UG_TITLE=ESTs, Weakly similar to F56C9.10.p (Caenorhabditis elegans) (C.elegans) BF283490 breast carcinoma amplified sequence 3 Bcas3 363662 NM_001173430 /// XM_001081081 /// XM_343952 1375315_at BE098345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098345 /DB_XREF=gi:8490208 /DB_XREF=UI-R-BJ1-asy-e-12-0-UI.s1 /CLONE=UI-R-BJ1-asy-e-12-0-UI /FEA=EST /CNT=12 /TID=Rn.23248.1 /TIER=Stack /STK=10 /UG=Rn.23248 /UG_TITLE=ESTs BE098345 rCG43335-like LOC100362321 100362321 XM_002728416 1375316_at BI291310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291310 /DB_XREF=gi:14950729 /DB_XREF=UI-R-CV2-cgo-c-07-0-UI.s1 /CLONE=UI-R-CV2-cgo-c-07-0-UI /FEA=EST /CNT=10 /TID=Rn.76395.1 /TIER=Stack /STK=10 /UG=Rn.76395 /UG_TITLE=ESTs BI291310 1375317_at BI296559 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296559 /DB_XREF=gi:14961101 /DB_XREF=UI-R-CV2-cgs-f-04-0-UI.s1 /CLONE=UI-R-CV2-cgs-f-04-0-UI /FEA=EST /CNT=10 /TID=Rn.76504.1 /TIER=Stack /STK=10 /UG=Rn.76504 /UG_TITLE=ESTs BI296559 dopa decarboxylase (aromatic L-amino acid decarboxylase) Ddc 24311 NM_012545 0006519 // cellular amino acid and derivative metabolic process // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from expression pattern /// 0009636 // response to toxin // inferred from electronic annotation /// 0009636 // response to toxin // not recorded /// 0019752 // carboxylic acid metabolic process // inferred from electronic annotation /// 0042416 // dopamine biosynthetic process // inferred from direct assay /// 0042417 // dopamine metabolic process // traceable author statement /// 0042423 // catecholamine biosynthetic process // traceable author statement /// 0042423 // catecholamine biosynthetic process // inferred from electronic annotation /// 0042428 // serotonin metabolic process // traceable author statement 0005622 // intracellular // traceable author statement /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004058 // aromatic-L-amino-acid decarboxylase activity // inferred from direct assay /// 0004058 // aromatic-L-amino-acid decarboxylase activity // not recorded /// 0004058 // aromatic-L-amino-acid decarboxylase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016597 // amino acid binding // inferred from direct assay /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from direct assay /// 0030170 // pyridoxal phosphate binding // traceable author statement /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1375318_at AI555848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555848 /DB_XREF=gi:4488211 /DB_XREF=UI-R-C2p-re-f-04-0-UI.s1 /CLONE=UI-R-C2p-re-f-04-0-UI /FEA=EST /CNT=10 /TID=Rn.8304.1 /TIER=Stack /STK=10 /UG=Rn.8304 /UG_TITLE=ESTs AI555848 1375319_at BF406138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406138 /DB_XREF=gi:11394113 /DB_XREF=UI-R-CA1-bjf-c-21-0-UI.s1 /CLONE=UI-R-CA1-bjf-c-21-0-UI /FEA=EST /CNT=10 /TID=Rn.61632.1 /TIER=Stack /STK=10 /UG=Rn.61632 /UG_TITLE=ESTs BF406138 1375320_at BI291436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291436 /DB_XREF=gi:14950974 /DB_XREF=UI-R-CV2-cgq-c-06-0-UI.s1 /CLONE=UI-R-CV2-cgq-c-06-0-UI /FEA=EST /CNT=10 /TID=Rn.18688.1 /TIER=Stack /STK=10 /UG=Rn.18688 /UG_TITLE=ESTs BI291436 1375321_at BF393840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393840 /DB_XREF=gi:11378703 /DB_XREF=UI-R-CA0-bgv-e-11-0-UI.s1 /CLONE=UI-R-CA0-bgv-e-11-0-UI /FEA=EST /CNT=10 /TID=Rn.53387.1 /TIER=Stack /STK=10 /UG=Rn.53387 /UG_TITLE=ESTs BF393840 1375322_at AI412421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412421 /DB_XREF=gi:4255925 /DB_XREF=EST240720 /CLONE=RBRDO70 /FEA=EST /CNT=10 /TID=Rn.22449.3 /TIER=Stack /STK=10 /UG=Rn.22449 /LL=29744 /UG_GENE=Sema6c /UG_TITLE=sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C AI412421 Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C Sema6c 29744 NM_017308 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0030215 // semaphorin receptor binding // not recorded 1375323_a_at AA944698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944698 /DB_XREF=gi:3104614 /DB_XREF=EST200197 /CLONE=REMAM92 /FEA=EST /CNT=10 /TID=Rn.22304.3 /TIER=Stack /STK=10 /UG=Rn.22304 /LL=94342 /UG_GENE=Bat3 /UG_TITLE=HLA-B associated transcript 3 AA944698 HLA-B-associated transcript 3 Bat3 94342 NM_001033968 /// NM_053609 0042127 // regulation of cell proliferation // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1375324_at BE095893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095893 /DB_XREF=gi:8486824 /DB_XREF=UI-R-BU0-apb-h-01-0-UI.s1 /CLONE=UI-R-BU0-apb-h-01-0-UI /FEA=EST /CNT=10 /TID=Rn.3440.3 /TIER=Stack /STK=10 /UG=Rn.3440 /LL=116561 /UG_GENE=Cltb /UG_TITLE=clathrin, light polypeptide (Lcb) BE095893 Clathrin, light chain (Lcb) Cltb 116561 NM_053835 0006836 // neurotransmitter transport // non-traceable author statement /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // non-traceable author statement /// 0016183 // synaptic vesicle coating // non-traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030118 // clathrin coat // inferred from direct assay /// 0030125 // clathrin vesicle coat // non-traceable author statement /// 0030130 // clathrin coat of trans-Golgi network vesicle // inferred from electronic annotation /// 0030132 // clathrin coat of coated pit // non-traceable author statement /// 0030132 // clathrin coat of coated pit // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005326 // neurotransmitter transporter activity // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042277 // peptide binding // inferred from direct assay 1375325_at BF415016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415016 /DB_XREF=gi:11403005 /DB_XREF=UI-R-BJ2-boy-f-11-0-UI.s1 /CLONE=UI-R-BJ2-boy-f-11-0-UI /FEA=EST /CNT=10 /TID=Rn.6462.1 /TIER=Stack /STK=10 /UG=Rn.6462 /UG_TITLE=ESTs, Weakly similar to T21142 hypothetical protein F20D1.1 - Caenorhabditis elegans (C.elegans) BF415016 ADAM metallopeptidase with thrombospondin type 1 motif, 13 Adamts13 362091 XM_001078796 /// XM_342395 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0008152 // metabolic process // not recorded /// 0034341 // response to interferon-gamma // inferred from expression pattern /// 0034612 // response to tumor necrosis factor // inferred from expression pattern /// 0042221 // response to chemical stimulus // inferred from expression pattern /// 0043171 // peptide catabolic process // not recorded /// 0070670 // response to interleukin-4 // inferred from expression pattern 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded 0004175 // endopeptidase activity // inferred from direct assay /// 0004175 // endopeptidase activity // not recorded /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1375326_at AI602458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602458 /DB_XREF=gi:4611619 /DB_XREF=UI-R-AG0-xa-a-12-0-UI.s1 /CLONE=UI-R-AG0-xa-a-12-0-UI /FEA=EST /CNT=10 /TID=Rn.38534.1 /TIER=Stack /STK=10 /UG=Rn.38534 /UG_TITLE=ESTs, Highly similar to DOC1 MOUSE PUTATIVE ORAL CANCER SUPPRESSOR (M.musculus) AI602458 CDK2-associated protein 1 Cdk2ap1 360804 NM_001113751 0005515 // protein binding // not recorded 1375327_at BF403319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403319 /DB_XREF=gi:11391294 /DB_XREF=UI-R-CA1-biy-e-02-0-UI.s1 /CLONE=UI-R-CA1-biy-e-02-0-UI /FEA=EST /CNT=10 /TID=Rn.62406.1 /TIER=Stack /STK=10 /UG=Rn.62406 /UG_TITLE=ESTs BF403319 leukocyte receptor cluster (LRC) member 8 Leng8 361506 NM_001037790 0005515 // protein binding // not recorded 1375328_at BF405109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405109 /DB_XREF=gi:11393084 /DB_XREF=UI-R-CA1-bip-g-06-0-UI.s1 /CLONE=UI-R-CA1-bip-g-06-0-UI /FEA=EST /CNT=10 /TID=Rn.60786.1 /TIER=Stack /STK=10 /UG=Rn.60786 /UG_TITLE=ESTs, Weakly similar to HEPS RAT SERINE PROTEASE HEPSIN (R.norvegicus) BF405109 protease, serine, 21 Prss21 353251 NM_181477 0006508 // proteolysis // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // traceable author statement /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1375329_at BF523837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523837 /DB_XREF=gi:11631804 /DB_XREF=UI-R-Y0-acg-c-08-0-UI.r1 /CLONE=UI-R-Y0-acg-c-08-0-UI /FEA=EST /CNT=11 /TID=Rn.20270.1 /TIER=Stack /STK=10 /UG=Rn.20270 /UG_TITLE=ESTs BF523837 1375330_at BI291390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291390 /DB_XREF=gi:14950889 /DB_XREF=UI-R-CV2-cgp-e-10-0-UI.s1 /CLONE=UI-R-CV2-cgp-e-10-0-UI /FEA=EST /CNT=10 /TID=Rn.79824.1 /TIER=Stack /STK=10 /UG=Rn.79824 /UG_TITLE=ESTs BI291390 1375331_at BF418058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418058 /DB_XREF=gi:11406047 /DB_XREF=UI-R-CA1-blv-h-09-0-UI.s1 /CLONE=UI-R-CA1-blv-h-09-0-UI /FEA=EST /CNT=10 /TID=Rn.63527.1 /TIER=Stack /STK=10 /UG=Rn.63527 /UG_TITLE=ESTs BF418058 1375332_at BI296576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296576 /DB_XREF=gi:14961127 /DB_XREF=UI-R-CV2-cgs-g-06-0-UI.s1 /CLONE=UI-R-CV2-cgs-g-06-0-UI /FEA=EST /CNT=10 /TID=Rn.79891.1 /TIER=Stack /STK=10 /UG=Rn.79891 /UG_TITLE=ESTs BI296576 prolyl 4-hydroxylase, alpha polypeptide II P4ha2 360526 NM_001108275 0018401 // peptidyl-proline hydroxylation to 4-hydroxy-L-proline // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation 0004656 // procollagen-proline 4-dioxygenase activity // inferred from electronic annotation /// 0004656 // procollagen-proline 4-dioxygenase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation 1375333_at BE120158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120158 /DB_XREF=gi:8512263 /DB_XREF=UI-R-CA0-bap-c-05-0-UI.s1 /CLONE=UI-R-CA0-bap-c-05-0-UI /FEA=EST /CNT=10 /TID=Rn.53467.1 /TIER=Stack /STK=10 /UG=Rn.53467 /UG_TITLE=ESTs BE120158 1375334_at AW533673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533673 /DB_XREF=gi:7176087 /DB_XREF=UI-R-BU0-anj-f-12-0-UI.s1 /CLONE=UI-R-BU0-anj-f-12-0-UI /FEA=EST /CNT=18 /TID=Rn.12102.1 /TIER=ConsEnd /STK=0 /UG=Rn.12102 /UG_TITLE=ESTs, Weakly similar to YJ95_CAEEL HYPOTHETICAL 52.8 KD PROTEIN T05E11.5 IN CHROMOSOME IV (C.elegans) AW533673 Histocompatibility 13 H13 311545 NM_001107789 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375335_at BI285700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285700 /DB_XREF=gi:14939610 /DB_XREF=UI-R-CT0s-cas-e-06-0-UI.s1 /CLONE=UI-R-CT0s-cas-e-06-0-UI /FEA=EST /CNT=141 /TID=Rn.787.1 /TIER=Stack /STK=9 /UG=Rn.787 /UG_TITLE=ESTs, Highly similar to HS9B RAT HEAT SHOCK PROTEIN HSP 90-BETA (R.norvegicus) BI285700 heat shock protein 90kDa alpha (cytosolic), class B member 1 Hsp90ab1 301252 NM_001004082 0001890 // placenta development // inferred from electronic annotation /// 0001890 // placenta development // not recorded /// 0006457 // protein folding // traceable author statement /// 0006457 // protein folding // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // traceable author statement /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0060334 // regulation of interferon-gamma-mediated signaling pathway // inferred from electronic annotation /// 0060334 // regulation of interferon-gamma-mediated signaling pathway // not recorded /// 0060338 // regulation of type I interferon-mediated signaling pathway // inferred from electronic annotation /// 0060338 // regulation of type I interferon-mediated signaling pathway // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0042470 // melanosome // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1375336_at AI237389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237389 /DB_XREF=gi:4136314 /DB_XREF=EST233951 /CLONE=RPLCY43 /FEA=EST /CNT=141 /TID=Rn.787.1 /TIER=Stack /STK=8 /UG=Rn.787 /UG_TITLE=ESTs, Highly similar to HS9B RAT HEAT SHOCK PROTEIN HSP 90-BETA (R.norvegicus) AI237389 heat shock protein 90kDa alpha (cytosolic), class B member 1 Hsp90ab1 301252 NM_001004082 0001890 // placenta development // inferred from electronic annotation /// 0001890 // placenta development // not recorded /// 0006457 // protein folding // traceable author statement /// 0006457 // protein folding // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // traceable author statement /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0060334 // regulation of interferon-gamma-mediated signaling pathway // inferred from electronic annotation /// 0060334 // regulation of interferon-gamma-mediated signaling pathway // not recorded /// 0060338 // regulation of type I interferon-mediated signaling pathway // inferred from electronic annotation /// 0060338 // regulation of type I interferon-mediated signaling pathway // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0042470 // melanosome // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1375337_at AI011712 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011712 /DB_XREF=gi:3225544 /DB_XREF=EST206163 /CLONE=ROVAZ19 /FEA=EST /CNT=37 /TID=Rn.4288.1 /TIER=Stack /STK=9 /UG=Rn.4288 /UG_TITLE=ESTs AI011712 1375338_at AA945841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945841 /DB_XREF=gi:4132622 /DB_XREF=EST201340 /CLONE=RLUAU88 /FEA=EST /CNT=39 /TID=Rn.65864.4 /TIER=Stack /STK=9 /UG=Rn.65864 /LL=85383 /UG_GENE=LOC85383 /UG_TITLE=unknown Glu-Pro dipeptide repeat protein AA945841 RAB10, member RAS oncogene family Rab10 50993 NM_017359 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0071236 // cellular response to antibiotic // inferred from expression pattern 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1375339_at BI296679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296679 /DB_XREF=gi:14961347 /DB_XREF=UI-R-CV2-cgv-a-11-0-UI.s1 /CLONE=UI-R-CV2-cgv-a-11-0-UI /FEA=EST /CNT=24 /TID=Rn.8269.1 /TIER=Stack /STK=9 /UG=Rn.8269 /UG_TITLE=ESTs BI296679 1375340_at AI104151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104151 /DB_XREF=gi:3708554 /DB_XREF=EST213440 /CLONE=RHEBX86 /FEA=EST /CNT=20 /TID=Rn.6390.2 /TIER=Stack /STK=9 /UG=Rn.6390 /LL=94189 /UG_GENE=Gosr1 /UG_TITLE=golgi SNAP receptor complex member 1 AI104151 NADH dehydrogenase subunit 2 ND2 26194 0006120 // mitochondrial electron transport, NADH to ubiquinone // inferred from electronic annotation /// 0006800 // oxygen and reactive oxygen species metabolic process // inferred from electronic annotation /// 0006800 // oxygen and reactive oxygen species metabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0042773 // ATP synthesis coupled electron transport // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1375341_at BG664807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664807 /DB_XREF=gi:13886729 /DB_XREF=DRABLE02 /CLONE=DRABLE02 /FEA=EST /CNT=24 /TID=Rn.22953.1 /TIER=Stack /STK=9 /UG=Rn.22953 /UG_TITLE=ESTs, Weakly similar to Y53C10A.5.p (Caenorhabditis elegans) (C.elegans) BG664807 transmembrane protein 189 /// ubiquitin-conjugating enzyme E2 variant 1 Tmem189 /// Ube2v1 296390 /// 362278 NM_001110345 /// NM_001113752 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1375342_at BG381296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381296 /DB_XREF=gi:13305768 /DB_XREF=UI-R-CT0-bui-e-07-0-UI.s1 /CLONE=UI-R-CT0-bui-e-07-0-UI /FEA=EST /CNT=15 /TID=Rn.964.6 /TIER=Stack /STK=9 /UG=Rn.964 /LL=24483 /UG_GENE=Igf2 /UG_TITLE=Insulin-like growth factor II (somatomedin A) BG381296 Nuclear factor I/C Nfic 29228 NM_031567 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006260 // DNA replication // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007608 // sensory perception of smell // non-traceable author statement /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016481 // negative regulation of transcription // inferred from direct assay /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0010843 // promoter binding // inferred from direct assay /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded 1375343_at BE116572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116572 /DB_XREF=gi:8508677 /DB_XREF=UI-R-BS1-ayj-g-10-0-UI.s1 /CLONE=UI-R-BS1-ayj-g-10-0-UI /FEA=EST /CNT=21 /TID=Rn.7718.1 /TIER=Stack /STK=9 /UG=Rn.7718 /UG_TITLE=ESTs BE116572 1375344_at BF418884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418884 /DB_XREF=gi:11406873 /DB_XREF=UI-R-BJ2-bqk-a-11-0-UI.s1 /CLONE=UI-R-BJ2-bqk-a-11-0-UI /FEA=EST /CNT=16 /TID=Rn.41460.1 /TIER=Stack /STK=9 /UG=Rn.41460 /UG_TITLE=ESTs, Moderately similar to TISB RAT TIS11B PROTEIN (R.norvegicus) BF418884 hypothetical protein LOC100362449 LOC100362449 100362449 XM_002729592 1375345_at AW919569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919569 /DB_XREF=gi:8085366 /DB_XREF=EST350873 /CLONE=RGIFZ11 /FEA=EST /CNT=15 /TID=Rn.40568.1 /TIER=Stack /STK=9 /UG=Rn.40568 /UG_TITLE=ESTs, Moderately similar to AF186115 1 putative secreted protein ZSIG9 (M.musculus) AW919569 canopy 2 homolog (zebrafish) Cnpy2 685814 NM_001077585 0005783 // endoplasmic reticulum // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375346_at BI290002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290002 /DB_XREF=gi:14948157 /DB_XREF=UI-R-DK0-cfq-f-10-0-UI.s1 /CLONE=UI-R-DK0-cfq-f-10-0-UI /FEA=EST /CNT=15 /TID=Rn.12131.1 /TIER=Stack /STK=9 /UG=Rn.12131 /UG_TITLE=ESTs BI290002 similar to hypothetical protein FLJ20010 RGD1563941 500993 NM_001109293 1375347_at BE107103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107103 /DB_XREF=gi:8499208 /DB_XREF=UI-R-BS1-ayp-h-06-0-UI.s1 /CLONE=UI-R-BS1-ayp-h-06-0-UI /FEA=EST /CNT=13 /TID=Rn.23688.1 /TIER=Stack /STK=9 /UG=Rn.23688 /UG_TITLE=ESTs, Weakly similar to GCL2_MOUSE General control of amino acid synthesis protein 5-like 2 (Histone acetyltransferase GCN5) (mmGCN5) (M.musculus) BE107103 fetal Alzheimer antigen Falz 303617 NM_001127535 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375348_at AW531648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531648 /DB_XREF=gi:7174062 /DB_XREF=UI-R-C4-aky-d-04-0-UI.s1 /CLONE=UI-R-C4-aky-d-04-0-UI /FEA=EST /CNT=13 /TID=Rn.12284.1 /TIER=Stack /STK=9 /UG=Rn.12284 /UG_TITLE=ESTs, Moderately similar to JC5614 RNB6 protein - rat (R.norvegicus) AW531648 Enabled homolog (Drosophila) Enah 360891 NM_001012150 0001843 // neural tube closure // not recorded /// 0006928 // cellular component movement // not recorded /// 0007015 // actin filament organization // not recorded /// 0007411 // axon guidance // not recorded /// 0008154 // actin polymerization or depolymerization // not recorded /// 0030036 // actin cytoskeleton organization // not recorded /// 0046907 // intracellular transport // inferred from electronic annotation 0001725 // stress fiber // not recorded /// 0005829 // cytosol // not recorded /// 0005925 // focal adhesion // not recorded /// 0030027 // lamellipodium // not recorded /// 0030175 // filopodium // not recorded 0005515 // protein binding // not recorded /// 0005522 // profilin binding // not recorded /// 0017124 // SH3 domain binding // not recorded /// 0050699 // WW domain binding // not recorded 1375349_at BI295776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295776 /DB_XREF=gi:14959552 /DB_XREF=UI-R-DK0-cfa-d-11-0-UI.s1 /CLONE=UI-R-DK0-cfa-d-11-0-UI /FEA=EST /CNT=24 /TID=Rn.12763.1 /TIER=Stack /STK=9 /UG=Rn.12763 /UG_TITLE=ESTs BI295776 1375350_at BF400811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400811 /DB_XREF=gi:11388826 /DB_XREF=UI-R-CA0-bhg-e-08-0-UI.s1 /CLONE=UI-R-CA0-bhg-e-08-0-UI /FEA=EST /CNT=12 /TID=Rn.55239.1 /TIER=Stack /STK=9 /UG=Rn.55239 /UG_TITLE=ESTs BF400811 1375351_at AI412264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412264 /DB_XREF=gi:4255768 /DB_XREF=EST240560 /CLONE=RBRDN42 /FEA=EST /CNT=12 /TID=Rn.15844.1 /TIER=Stack /STK=9 /UG=Rn.15844 /UG_TITLE=ESTs, Weakly similar to S59856 collagen alpha 1(III) chain precursor - mouse (M.musculus) AI412264 single stranded DNA binding protein 4 Ssbp4 364534 NM_001014236 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1375352_at AI177506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177506 /DB_XREF=gi:3728144 /DB_XREF=EST221138 /CLONE=RPLCA85 /FEA=EST /CNT=12 /TID=Rn.8447.1 /TIER=Stack /STK=9 /UG=Rn.8447 /UG_TITLE=ESTs, Highly similar to beta-1,4-galactosyltransferase II (M.musculus) AI177506 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 B4galt2 313536 NM_001107965 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1375353_at BI296696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296696 /DB_XREF=gi:14961381 /DB_XREF=UI-R-CV2-cgv-c-05-0-UI.s1 /CLONE=UI-R-CV2-cgv-c-05-0-UI /FEA=EST /CNT=12 /TID=Rn.38830.1 /TIER=Stack /STK=9 /UG=Rn.38830 /UG_TITLE=ESTs BI296696 Cdk5 and Abl enzyme substrate 1 Cables1 307585 NM_001107404 0007399 // nervous system development // not recorded /// 0051302 // regulation of cell division // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded /// 0016538 // cyclin-dependent protein kinase regulator activity // inferred from electronic annotation 1375354_at BE098366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098366 /DB_XREF=gi:8490230 /DB_XREF=UI-R-BJ1-asy-g-12-0-UI.s1 /CLONE=UI-R-BJ1-asy-g-12-0-UI /FEA=EST /CNT=12 /TID=Rn.22682.1 /TIER=Stack /STK=9 /UG=Rn.22682 /UG_TITLE=ESTs, Weakly similar to JC5938 thioredoxin-like protein (H.sapiens) BE098366 Similar to HT014 RGD1308048 298557 XM_001068778 /// XM_216543 1375355_at AI763565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763565 /DB_XREF=gi:5209500 /DB_XREF=UI-R-Y0-abf-d-10-0-UI.s1 /CLONE=UI-R-Y0-abf-d-10-0-UI /FEA=EST /CNT=12 /TID=Rn.22203.1 /TIER=Stack /STK=9 /UG=Rn.22203 /UG_TITLE=ESTs AI763565 1375356_at AI411304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411304 /DB_XREF=gi:4254808 /DB_XREF=EST239598 /CLONE=RKIEU14 /FEA=EST /CNT=13 /TID=Rn.22104.1 /TIER=Stack /STK=9 /UG=Rn.22104 /UG_TITLE=ESTs, Weakly similar to T00636 hypothetical protein F21856_2 (H.sapiens) AI411304 hypothetical LOC304650 RGD1310262 304650 NM_001107161 1375357_at BE112237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112237 /DB_XREF=gi:8504342 /DB_XREF=UI-R-BJ1-avl-c-11-0-UI.s1 /CLONE=UI-R-BJ1-avl-c-11-0-UI /FEA=EST /CNT=13 /TID=Rn.20041.1 /TIER=Stack /STK=9 /UG=Rn.20041 /UG_TITLE=ESTs, Highly similar to TO1A_MOUSE Torsin A precursor (M.musculus) BE112237 dystonia 1 Dyt1 266606 NM_153303 0006979 // response to oxidative stress // inferred from direct assay /// 0051085 // chaperone mediated protein folding requiring cofactor // inferred from electronic annotation 0005625 // soluble fraction // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from direct assay 1375358_at AA998150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998150 /DB_XREF=gi:4287865 /DB_XREF=UI-R-C0-id-c-11-0-UI.s1 /CLONE=UI-R-C0-id-c-11-0-UI /FEA=EST /CNT=12 /TID=Rn.7701.1 /TIER=Stack /STK=9 /UG=Rn.7701 /UG_TITLE=ESTs AA998150 1375359_at BE114004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114004 /DB_XREF=gi:8506109 /DB_XREF=UI-R-BJ1-awi-h-09-0-UI.s1 /CLONE=UI-R-BJ1-awi-h-09-0-UI /FEA=EST /CNT=12 /TID=Rn.22114.1 /TIER=Stack /STK=9 /UG=Rn.22114 /UG_TITLE=ESTs BE114004 GDNF family receptor alpha 2 Gfra2 25136 NM_012750 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0031953 // negative regulation of protein autophosphorylation // inferred from direct assay 0046658 // anchored to plasma membrane // inferred from mutant phenotype 0004872 // receptor activity // inferred from electronic annotation /// 0016167 // glial cell line-derived neurotrophic factor receptor activity // inferred from direct assay 1375360_at BE099437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099437 /DB_XREF=gi:8491278 /DB_XREF=UI-R-BJ1-atw-a-05-0-UI.s1 /CLONE=UI-R-BJ1-atw-a-05-0-UI /FEA=EST /CNT=11 /TID=Rn.859.2 /TIER=Stack /STK=9 /UG=Rn.859 /LL=26954 /UG_GENE=Rheb /UG_TITLE=Ras homolog enriched in brain BE099437 Ras homolog enriched in brain Rheb 26954 NM_013216 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from direct assay /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0048168 // regulation of neuronal synaptic plasticity // non-traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1375361_at BE100014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100014 /DB_XREF=gi:8491899 /DB_XREF=UI-R-BJ1-atr-g-01-0-UI.s1 /CLONE=UI-R-BJ1-atr-g-01-0-UI /FEA=EST /CNT=11 /TID=Rn.8090.1 /TIER=Stack /STK=9 /UG=Rn.8090 /UG_TITLE=ESTs, Weakly similar to SNX7_MOUSE Sorting nexin 7 (M.musculus) BE100014 sorting nexin 18 Snx18 310097 NM_001107652 0007154 // cell communication // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1375362_at BI304125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI304125 /DB_XREF=gi:14980405 /DB_XREF=UI-R-DR0-cjc-l-03-0-UI.s1 /CLONE=UI-R-DR0-cjc-l-03-0-UI /FEA=EST /CNT=11 /TID=Rn.8666.1 /TIER=Stack /STK=9 /UG=Rn.8666 /UG_TITLE=ESTs BI304125 signal peptide peptidase-like 2A Sppl2a 311401 NM_001107770 0016021 // integral to membrane // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation 1375363_at BG374402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374402 /DB_XREF=gi:13298874 /DB_XREF=UI-R-CV1-bsp-a-01-0-UI.s1 /CLONE=UI-R-CV1-bsp-a-01-0-UI /FEA=EST /CNT=11 /TID=Rn.43377.1 /TIER=Stack /STK=9 /UG=Rn.43377 /UG_TITLE=ESTs BG374402 1375364_at AI070745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070745 /DB_XREF=gi:3396996 /DB_XREF=UI-R-C2-no-d-03-0-UI.s1 /CLONE=UI-R-C2-no-d-03-0-UI /FEA=EST /CNT=11 /TID=Rn.12052.1 /TIER=Stack /STK=9 /UG=Rn.12052 /UG_TITLE=ESTs AI070745 serine/threonine kinase 11 Stk11 314621 NM_001108069 0001894 // tissue homeostasis // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0007409 // axonogenesis // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // not recorded /// 0030111 // regulation of Wnt receptor signaling pathway // not recorded /// 0033762 // response to glucagon stimulus // inferred from expression pattern /// 0033993 // response to lipid // inferred from direct assay /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045722 // positive regulation of gluconeogenesis // inferred from mutant phenotype /// 0046320 // regulation of fatty acid oxidation // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051896 // regulation of protein kinase B signaling cascade // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060770 // negative regulation of epithelial cell proliferation involved in prostate gland development // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from mutant phenotype /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0030275 // LRR domain binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction 1375365_at BE112020 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112020 /DB_XREF=gi:8504165 /DB_XREF=UI-R-BJ1-avk-c-02-0-UI.s1 /CLONE=UI-R-BJ1-avk-c-02-0-UI /FEA=EST /CNT=11 /TID=Rn.7004.1 /TIER=Stack /STK=9 /UG=Rn.7004 /UG_TITLE=ESTs BE112020 Similar to zinc finger protein 740 LOC685834 685834 XM_001065442 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1375366_at AI599428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599428 /DB_XREF=gi:4608476 /DB_XREF=EST251131 /CLONE=REMEO23 /FEA=EST /CNT=16 /TID=Rn.18115.1 /TIER=Stack /STK=9 /UG=Rn.18115 /UG_TITLE=ESTs, Weakly similar to A55929 zinc finger protein nocA - fruit fly (D.melanogaster) AI599428 Zinc finger protein 503 Znf503 305687 NM_001107250 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1375367_at AI411212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411212 /DB_XREF=gi:4254716 /DB_XREF=EST239506 /CLONE=RKIEQ20 /FEA=EST /CNT=15 /TID=Rn.22348.1 /TIER=Stack /STK=9 /UG=Rn.22348 /UG_TITLE=ESTs, Weakly similar to LIM PROTEIN CLP36 (R.norvegicus) AI411212 PDZ and LIM domain 2 Pdlim2 290354 NM_001007622 0001725 // stress fiber // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0009986 // cell surface // not recorded /// 0015629 // actin cytoskeleton // not recorded /// 0030864 // cortical actin cytoskeleton // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0031006 // filamin-A binding // inferred from physical interaction /// 0032036 // myosin heavy chain binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051371 // muscle alpha-actinin binding // inferred from physical interaction /// 0051372 // nonmuscle alpha-actinin binding // inferred from physical interaction 1375368_at BF420654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420654 /DB_XREF=gi:11408643 /DB_XREF=UI-R-BJ2-bpy-e-10-0-UI.s1 /CLONE=UI-R-BJ2-bpy-e-10-0-UI /FEA=EST /CNT=11 /TID=Rn.22060.1 /TIER=Stack /STK=9 /UG=Rn.22060 /UG_TITLE=ESTs, Weakly similar to nitrophenylphosphatase (Caenorhabditis elegans) (C.elegans) BF420654 phosphoglycolate phosphatase Pgp 287115 NM_001169152 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1375369_at Z83035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Z83035 /DB_XREF=gi:4729166 /DB_XREF=RNZ83035 /CLONE=IRL332 /FEA=EST /CNT=11 /TID=Rn.4246.1 /TIER=Stack /STK=9 /UG=Rn.4246 /UG_TITLE=ESTs Z83035 similar to hypothetical protein FLJ20154 RGD1305793 309456 NM_001127484 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1375370_at BE119626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119626 /DB_XREF=gi:8511731 /DB_XREF=UI-R-CA0-baz-b-03-0-UI.s1 /CLONE=UI-R-CA0-baz-b-03-0-UI /FEA=EST /CNT=10 /TID=Rn.51295.1 /TIER=Stack /STK=9 /UG=Rn.51295 /UG_TITLE=ESTs BE119626 1375371_at BI296662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296662 /DB_XREF=gi:14961313 /DB_XREF=UI-R-CV2-cgt-h-03-0-UI.s1 /CLONE=UI-R-CV2-cgt-h-03-0-UI /FEA=EST /CNT=10 /TID=Rn.52526.1 /TIER=Stack /STK=9 /UG=Rn.52526 /UG_TITLE=ESTs, Weakly similar to S57968 Ran-binding protein 2 - mouse (M.musculus) BI296662 RAN binding protein 2 Ranbp2 294429 NM_001191604 /// XM_001053839 /// XM_002725863 /// XM_002728957 /// XM_215401 0006457 // protein folding // inferred from electronic annotation /// 0046907 // intracellular transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005643 // nuclear pore // not recorded /// 0005829 // cytosol // not recorded 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1375372_at BE113060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113060 /DB_XREF=gi:8505165 /DB_XREF=UI-R-BJ1-awf-h-07-0-UI.s1 /CLONE=UI-R-BJ1-awf-h-07-0-UI /FEA=EST /CNT=10 /TID=Rn.22403.1 /TIER=Stack /STK=9 /UG=Rn.22403 /UG_TITLE=ESTs, Weakly similar to S16506 hypothetical protein (H.sapiens) BE113060 REX1, RNA exonuclease 1 homolog (S. cerevisiae) Rexo1 314630 NM_001012114 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation 1375373_at AI179744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179744 /DB_XREF=gi:3730382 /DB_XREF=EST223472 /CLONE=RSPCL13 /FEA=EST /CNT=10 /TID=Rn.8776.1 /TIER=Stack /STK=9 /UG=Rn.8776 /UG_TITLE=ESTs AI179744 1375374_at BF400606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400606 /DB_XREF=gi:11388581 /DB_XREF=UI-R-CA0-bhd-d-05-0-UI.s1 /CLONE=UI-R-CA0-bhd-d-05-0-UI /FEA=EST /CNT=10 /TID=Rn.62530.1 /TIER=Stack /STK=9 /UG=Rn.62530 /UG_TITLE=ESTs BF400606 1375375_at AI059414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059414 /DB_XREF=gi:3333191 /DB_XREF=UI-R-C1-kw-a-12-0-UI.s1 /CLONE=UI-R-C1-kw-a-12-0-UI /FEA=EST /CNT=10 /TID=Rn.37556.2 /TIER=Stack /STK=9 /UG=Rn.37556 /LL=65043 /UG_GENE=Rpl14 /UG_TITLE=ribosomal protein L14 AI059414 Ribosomal protein L14 Rpl14 65043 NM_022949 0006364 // rRNA processing // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0042273 // ribosomal large subunit biogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375376_at AA997231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997231 /DB_XREF=gi:4282537 /DB_XREF=UI-R-C0-hs-d-06-0-UI.s1 /CLONE=UI-R-C0-hs-d-06-0-UI /FEA=EST /CNT=10 /TID=Rn.8217.1 /TIER=Stack /STK=9 /UG=Rn.8217 /UG_TITLE=ESTs AA997231 Hypothetical protein LOC688579 LOC688579 688579 XM_001067491 /// XM_002725292 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1375377_at BE098713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098713 /DB_XREF=gi:8490580 /DB_XREF=UI-R-BJ1-atd-a-11-0-UI.s1 /CLONE=UI-R-BJ1-atd-a-11-0-UI /FEA=EST /CNT=10 /TID=Rn.21020.1 /TIER=Stack /STK=9 /UG=Rn.21020 /UG_TITLE=ESTs BE098713 immunoglobulin superfamily, member 3 Igsf3 295325 NM_001106455 1375378_at BE108882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108882 /DB_XREF=gi:8500987 /DB_XREF=UI-R-BS1-ayz-e-03-0-UI.s1 /CLONE=UI-R-BS1-ayz-e-03-0-UI /FEA=EST /CNT=10 /TID=Rn.22495.1 /TIER=Stack /STK=9 /UG=Rn.22495 /UG_TITLE=ESTs BE108882 Quaking Qk 499022 NM_001115021 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008366 // axon ensheathment // not recorded /// 0008366 // axon ensheathment // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042552 // myelination // inferred from electronic annotation /// 0042552 // myelination // not recorded /// 0042692 // muscle cell differentiation // inferred from electronic annotation /// 0042692 // muscle cell differentiation // not recorded /// 0042759 // long-chain fatty acid biosynthetic process // inferred from electronic annotation /// 0042759 // long-chain fatty acid biosynthetic process // not recorded /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017124 // SH3 domain binding // inferred from electronic annotation 1375379_at BI296734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296734 /DB_XREF=gi:14961457 /DB_XREF=UI-R-CV2-cgv-f-10-0-UI.s1 /CLONE=UI-R-CV2-cgv-f-10-0-UI /FEA=EST /CNT=10 /TID=Rn.66922.1 /TIER=Stack /STK=9 /UG=Rn.66922 /UG_TITLE=ESTs, Highly similar to S13426 multidrug resistance protein homolog - rat (R.norvegicus) BI296734 Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) Tap1 24811 NM_032055 0006810 // transport // inferred from electronic annotation /// 0006952 // defense response // inferred from electronic annotation /// 0006952 // defense response // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0015833 // peptide transport // inferred from mutant phenotype /// 0015833 // peptide transport // not recorded /// 0015833 // peptide transport // inferred from electronic annotation /// 0019060 // intracellular transport of viral proteins in host cell // inferred from electronic annotation /// 0019060 // intracellular transport of viral proteins in host cell // not recorded /// 0019885 // antigen processing and presentation of endogenous peptide antigen via MHC class I // inferred from electronic annotation /// 0019885 // antigen processing and presentation of endogenous peptide antigen via MHC class I // not recorded /// 0042270 // protection from natural killer cell mediated cytotoxicity // inferred from mutant phenotype /// 0046967 // cytosol to ER transport // inferred from electronic annotation /// 0046967 // cytosol to ER transport // not recorded /// 0046968 // peptide antigen transport // traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded /// 0042825 // TAP complex // inferred from direct assay /// 0042825 // TAP complex // inferred from physical interaction /// 0042825 // TAP complex // not recorded /// 0042825 // TAP complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from direct assay /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0015197 // peptide transporter activity // inferred from electronic annotation /// 0015197 // peptide transporter activity // not recorded /// 0015433 // peptide antigen-transporting ATPase activity // traceable author statement /// 0016887 // ATPase activity // inferred from direct assay /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042288 // MHC class I protein binding // inferred from direct assay /// 0042288 // MHC class I protein binding // not recorded /// 0042605 // peptide antigen binding // inferred from direct assay /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0043531 // ADP binding // inferred from direct assay /// 0043531 // ADP binding // not recorded /// 0043531 // ADP binding // inferred from electronic annotation /// 0046978 // TAP1 binding // inferred from physical interaction /// 0046979 // TAP2 binding // inferred from physical interaction /// 0046979 // TAP2 binding // not recorded /// 0046979 // TAP2 binding // inferred from electronic annotation /// 0046980 // tapasin binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from direct assay 1375380_at AI548252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548252 /DB_XREF=gi:4465740 /DB_XREF=UI-R-C3-ti-d-03-0-UI.s1 /CLONE=UI-R-C3-ti-d-03-0-UI /FEA=EST /CNT=10 /TID=Rn.24967.1 /TIER=Stack /STK=9 /UG=Rn.24967 /UG_TITLE=ESTs, Highly similar to JC7090 germ cell-less protein homolog - mouse (M.musculus) AI548252 germ cell-less homolog 1 (Drosophila) Gmcl1 312516 NM_001010956 /// NM_001033931 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded 0005635 // nuclear envelope // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375381_at AW252503 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252503 /DB_XREF=gi:6596094 /DB_XREF=UI-R-BJ0-ada-c-10-0-UI.s1 /CLONE=UI-R-BJ0-ada-c-10-0-UI /FEA=EST /CNT=10 /TID=Rn.3355.1 /TIER=Stack /STK=9 /UG=Rn.3355 /UG_TITLE=ESTs, Weakly similar to putative progesterone binding protein (R.norvegicus) AW252503 Neuron derived neurotrophic factor Nenf 289380 NM_001002851 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375382_at BE120346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120346 /DB_XREF=gi:8512451 /DB_XREF=UI-R-CA0-baq-d-03-0-UI.s1 /CLONE=UI-R-CA0-baq-d-03-0-UI /FEA=EST /CNT=10 /TID=Rn.24901.1 /TIER=Stack /STK=9 /UG=Rn.24901 /UG_TITLE=ESTs, Weakly similar to Pax transcription activation domain interacting protein PTIP (M.musculus) BE120346 mediator of DNA damage checkpoint 1 Mdc1 309595 NM_001166275 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation 1375383_at AW251217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251217 /DB_XREF=gi:6594808 /DB_XREF=UI-R-BJ0-adf-e-10-0-UI.s1 /CLONE=UI-R-BJ0-adf-e-10-0-UI /FEA=EST /CNT=10 /TID=Rn.41468.1 /TIER=Stack /STK=9 /UG=Rn.41468 /UG_TITLE=ESTs AW251217 1375384_at AI715114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715114 /DB_XREF=gi:5032367 /DB_XREF=UI-R-Y0-abl-c-11-0-UI.s1 /CLONE=UI-R-Y0-abl-c-11-0-UI /FEA=EST /CNT=10 /TID=Rn.24206.2 /TIER=Stack /STK=9 /UG=Rn.24206 /LL=25161 /UG_GENE=Sp3 /UG_TITLE=Trans-acting transcription factor 3 AI715114 Sp3 transcription factor Sp3 367846 XM_002726189 /// XM_002729171 0001503 // ossification // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0001779 // natural killer cell differentiation // not recorded /// 0001829 // trophectodermal cell differentiation // not recorded /// 0001889 // liver development // not recorded /// 0001892 // embryonic placenta development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030183 // B cell differentiation // not recorded /// 0030217 // T cell differentiation // not recorded /// 0030218 // erythrocyte differentiation // not recorded /// 0030219 // megakaryocyte differentiation // not recorded /// 0030224 // monocyte differentiation // not recorded /// 0030324 // lung development // not recorded /// 0030851 // granulocyte differentiation // not recorded /// 0043353 // enucleate erythrocyte differentiation // not recorded /// 0048596 // embryonic camera-type eye morphogenesis // not recorded /// 0048706 // embryonic skeletal system development // not recorded /// 0060136 // embryonic process involved in female pregnancy // not recorded /// 0060216 // definitive hemopoiesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003690 // double-stranded DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded 1375385_at BF406234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406234 /DB_XREF=gi:11394209 /DB_XREF=UI-R-CA1-bjf-i-10-0-UI.s1 /CLONE=UI-R-CA1-bjf-i-10-0-UI /FEA=EST /CNT=9 /TID=Rn.63062.1 /TIER=Stack /STK=9 /UG=Rn.63062 /UG_TITLE=ESTs BF406234 1375386_at BF406151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406151 /DB_XREF=gi:11394126 /DB_XREF=UI-R-CA1-bjf-g-07-0-UI.s1 /CLONE=UI-R-CA1-bjf-g-07-0-UI /FEA=EST /CNT=9 /TID=Rn.63502.1 /TIER=Stack /STK=9 /UG=Rn.63502 /UG_TITLE=ESTs BF406151 1375387_at BF400824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400824 /DB_XREF=gi:11388764 /DB_XREF=UI-R-CA0-bhf-f-07-0-UI.s1 /CLONE=UI-R-CA0-bhf-f-07-0-UI /FEA=EST /CNT=9 /TID=Rn.61470.1 /TIER=Stack /STK=9 /UG=Rn.61470 /UG_TITLE=ESTs BF400824 1375388_at BF400832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400832 /DB_XREF=gi:11388772 /DB_XREF=UI-R-CA0-bhf-g-03-0-UI.s1 /CLONE=UI-R-CA0-bhf-g-03-0-UI /FEA=EST /CNT=9 /TID=Rn.51204.1 /TIER=Stack /STK=9 /UG=Rn.51204 /UG_TITLE=ESTs BF400832 1375389_at AI103639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103639 /DB_XREF=gi:3708166 /DB_XREF=EST212928 /CLONE=REMCE58 /FEA=EST /CNT=9 /TID=Rn.11258.2 /TIER=Stack /STK=9 /UG=Rn.11258 /LL=25546 /UG_GENE=Shox2 /UG_TITLE=Short stature homeobox 2 AI103639 Short stature homeobox 2 Shox2 25546 NM_013028 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0002063 // chondrocyte development // inferred from electronic annotation /// 0002063 // chondrocyte development // not recorded /// 0003170 // heart valve development // inferred from electronic annotation /// 0003170 // heart valve development // not recorded /// 0003209 // cardiac atrium morphogenesis // inferred from electronic annotation /// 0003209 // cardiac atrium morphogenesis // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0032330 // regulation of chondrocyte differentiation // inferred from electronic annotation /// 0032330 // regulation of chondrocyte differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045880 // positive regulation of smoothened signaling pathway // inferred from electronic annotation /// 0045880 // positive regulation of smoothened signaling pathway // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048557 // embryonic digestive tract morphogenesis // inferred from electronic annotation /// 0048557 // embryonic digestive tract morphogenesis // not recorded /// 0048598 // embryonic morphogenesis // inferred from electronic annotation /// 0048598 // embryonic morphogenesis // not recorded /// 0060272 // embryonic skeletal joint morphogenesis // inferred from electronic annotation /// 0060272 // embryonic skeletal joint morphogenesis // not recorded /// 0060351 // cartilage development involved in endochondral bone morphogenesis // inferred from electronic annotation /// 0060351 // cartilage development involved in endochondral bone morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1375390_at BI296459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296459 /DB_XREF=gi:14960902 /DB_XREF=UI-R-CV2-cgr-d-12-0-UI.s1 /CLONE=UI-R-CV2-cgr-d-12-0-UI /FEA=EST /CNT=9 /TID=Rn.79919.1 /TIER=Stack /STK=9 /UG=Rn.79919 /UG_TITLE=ESTs BI296459 similar to mKIAA0226 protein RGD1305422 303885 XM_001065343 /// XM_002724728 /// XM_002727897 /// XM_221382 0010507 // negative regulation of autophagy // not recorded /// 0045806 // negative regulation of endocytosis // not recorded 0005769 // early endosome // not recorded /// 0005770 // late endosome // not recorded /// 0005794 // Golgi apparatus // not recorded 0005515 // protein binding // not recorded 1375391_at BF403352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403352 /DB_XREF=gi:11391327 /DB_XREF=UI-R-CA1-biy-i-24-0-UI.s1 /CLONE=UI-R-CA1-biy-i-24-0-UI /FEA=EST /CNT=9 /TID=Rn.63087.1 /TIER=Stack /STK=9 /UG=Rn.63087 /UG_TITLE=ESTs BF403352 1375392_at BF405277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405277 /DB_XREF=gi:11393252 /DB_XREF=UI-R-CA1-biw-e-03-0-UI.s1 /CLONE=UI-R-CA1-biw-e-03-0-UI /FEA=EST /CNT=9 /TID=Rn.62582.1 /TIER=Stack /STK=9 /UG=Rn.62582 /UG_TITLE=ESTs BF405277 1375393_at BG377970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377970 /DB_XREF=gi:13302442 /DB_XREF=UI-R-CU0-bvh-d-01-0-UI.s1 /CLONE=UI-R-CU0-bvh-d-01-0-UI /FEA=EST /CNT=9 /TID=Rn.45063.1 /TIER=Stack /STK=9 /UG=Rn.45063 /UG_TITLE=ESTs, Moderately similar to BACE RAT BETA-SECRETASE PRECURSOR (R.norvegicus) BG377970 1375394_at BG373112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373112 /DB_XREF=gi:13269649 /DB_XREF=UI-R-CV1-bsf-f-04-0-UI.s1 /CLONE=UI-R-CV1-bsf-f-04-0-UI /FEA=EST /CNT=9 /TID=Rn.73444.1 /TIER=Stack /STK=9 /UG=Rn.73444 /UG_TITLE=ESTs BG373112 orthodenticle homeobox 2 Otx2 305858 NM_001100566 0001708 // cell fate specification // inferred from electronic annotation /// 0001708 // cell fate specification // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0007492 // endoderm development // inferred from electronic annotation /// 0007492 // endoderm development // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0030901 // midbrain development // inferred from electronic annotation /// 0030901 // midbrain development // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0042706 // eye photoreceptor cell fate commitment // inferred from electronic annotation /// 0042706 // eye photoreceptor cell fate commitment // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0048856 // anatomical structure development // not recorded /// 0048856 // anatomical structure development // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030426 // growth cone // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1375395_at BE116886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116886 /DB_XREF=gi:8509031 /DB_XREF=UI-R-BS1-azg-g-12-0-UI.s1 /CLONE=UI-R-BS1-azg-g-12-0-UI /FEA=EST /CNT=9 /TID=Rn.39324.1 /TIER=Stack /STK=9 /UG=Rn.39324 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) BE116886 zinc finger protein 324 Zfp324 365192 XM_001055374 /// XM_344862 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375396_at BI282129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282129 /DB_XREF=gi:14932567 /DB_XREF=UI-R-CU0s-cbw-h-09-0-UI.s1 /CLONE=UI-R-CU0s-cbw-h-09-0-UI /FEA=EST /CNT=9 /TID=Rn.44196.1 /TIER=Stack /STK=9 /UG=Rn.44196 /UG_TITLE=ESTs, Moderately similar to pumilio; pumuckel; ovarette; bemused (Drosophila melanogaster) (D.melanogaster) BI282129 pumilio homolog 1 (Drosophila) Pum1 362609 NM_001108684 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0016044 // cellular membrane organization // not recorded 0005829 // cytosol // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1375397_at AI010050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010050 /DB_XREF=gi:3223882 /DB_XREF=EST204501 /CLONE=RLUBS95 /FEA=EST /CNT=9 /TID=Rn.23385.1 /TIER=Stack /STK=9 /UG=Rn.23385 /UG_TITLE=ESTs, Weakly similar to LIS1 MOUSE PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB ALPHA SUBUNIT (R.norvegicus) AI010050 Similar to U5 snRNP-specific protein (Prp8-binding) RGD1309198 313056 NM_001134556 0008380 // RNA splicing // not recorded 0005515 // protein binding // not recorded 1375398_at AW251322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251322 /DB_XREF=gi:6594913 /DB_XREF=UI-R-BJ0-adg-g-09-0-UI.s1 /CLONE=UI-R-BJ0-adg-g-09-0-UI /FEA=EST /CNT=9 /TID=Rn.25191.1 /TIER=Stack /STK=9 /UG=Rn.25191 /UG_TITLE=ESTs, Highly similar to T34524 hypothetical protein DKFZp566N034.1 (H.sapiens) AW251322 Transmembrane protein 163 Tmem163 360839 NM_001110763 1375399_a_at AI578273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578273 /DB_XREF=gi:4562649 /DB_XREF=UI-R-G0-ui-g-05-0-UI.s2 /CLONE=UI-R-G0-ui-g-05-0-UI /FEA=EST /CNT=9 /TID=Rn.40555.1 /TIER=Stack /STK=9 /UG=Rn.40555 /UG_TITLE=ESTs, Weakly similar to KEMK MOUSE PUTATIVE SERINETHREONINE-PROTEIN KINASE EMK (M.musculus) AI578273 MAP/microtubule affinity-regulating kinase 4 Mark4 680407 NM_001191071 /// XM_001057742 /// XM_002725542 /// XM_002725543 /// XM_002728699 0000226 // microtubule cytoskeleton organization // not recorded /// 0001578 // microtubule bundle formation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007399 // nervous system development // not recorded 0005813 // centrosome // not recorded /// 0005815 // microtubule organizing center // not recorded /// 0015630 // microtubule cytoskeleton // not recorded /// 0043005 // neuron projection // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0043015 // gamma-tubulin binding // not recorded /// 0050321 // tau-protein kinase activity // not recorded 1375400_at BF420605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420605 /DB_XREF=gi:11408594 /DB_XREF=UI-R-BJ2-bpy-a-05-0-UI.s1 /CLONE=UI-R-BJ2-bpy-a-05-0-UI /FEA=EST /CNT=9 /TID=Rn.43941.1 /TIER=Stack /STK=9 /UG=Rn.43941 /UG_TITLE=ESTs, Highly similar to JC7317 cyclin-dependent kinase 3 interactor-1 - mouse (M.musculus) BF420605 1375401_at BE118400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118400 /DB_XREF=gi:8510505 /DB_XREF=UI-R-BJ1-azp-b-11-0-UI.s1 /CLONE=UI-R-BJ1-azp-b-11-0-UI /FEA=EST /CNT=9 /TID=Rn.6995.2 /TIER=Stack /STK=9 /UG=Rn.6995 /LL=81727 /UG_GENE=Mvk /UG_TITLE=mevalonate kinase BE118400 Mevalonate kinase Mvk 81727 NM_031063 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0006720 // isoprenoid metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008299 // isoprenoid biosynthetic process // inferred from direct assay /// 0008299 // isoprenoid biosynthetic process // not recorded /// 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0016125 // sterol metabolic process // traceable author statement /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0016310 // phosphorylation // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from direct assay /// 0019287 // isopentenyl diphosphate biosynthetic process, mevalonate pathway // inferred from direct assay /// 0045540 // regulation of cholesterol biosynthetic process // non-traceable author statement 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from direct assay /// 0004496 // mevalonate kinase activity // inferred from direct assay /// 0004496 // mevalonate kinase activity // not recorded /// 0004496 // mevalonate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1375402_at BF391604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391604 /DB_XREF=gi:11376457 /DB_XREF=UI-R-CA1-bcw-d-02-0-UI.s1 /CLONE=UI-R-CA1-bcw-d-02-0-UI /FEA=EST /CNT=9 /TID=Rn.57339.1 /TIER=Stack /STK=9 /UG=Rn.57339 /UG_TITLE=ESTs BF391604 1375403_at AW251376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251376 /DB_XREF=gi:6594967 /DB_XREF=UI-R-BJ0-adh-d-06-0-UI.s1 /CLONE=UI-R-BJ0-adh-d-06-0-UI /FEA=EST /CNT=9 /TID=Rn.11606.2 /TIER=Stack /STK=9 /UG=Rn.11606 /LL=114560 /UG_GENE=Rap2a /UG_TITLE=rap2A-like protein AW251376 1375404_at BF415963 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415963 /DB_XREF=gi:11403952 /DB_XREF=UI-R-CA0-bkp-d-08-0-UI.s1 /CLONE=UI-R-CA0-bkp-d-08-0-UI /FEA=EST /CNT=9 /TID=Rn.52925.1 /TIER=Stack /STK=9 /UG=Rn.52925 /UG_TITLE=ESTs BF415963 1375405_at BF405058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405058 /DB_XREF=gi:11393033 /DB_XREF=UI-R-CA1-bip-b-04-0-UI.s1 /CLONE=UI-R-CA1-bip-b-04-0-UI /FEA=EST /CNT=9 /TID=Rn.64406.1 /TIER=Stack /STK=9 /UG=Rn.64406 /UG_TITLE=ESTs BF405058 1375406_s_at BF419792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419792 /DB_XREF=gi:11407781 /DB_XREF=UI-R-CA0-bpg-c-07-0-UI.s1 /CLONE=UI-R-CA0-bpg-c-07-0-UI /FEA=EST /CNT=9 /TID=Rn.63645.1 /TIER=Stack /STK=9 /UG=Rn.63645 /UG_TITLE=ESTs, Weakly similar to JC5261 salt-tolerant protein - rat (R.norvegicus) BF419792 formin binding protein 1 Fnbp1 192348 NM_138914 0006897 // endocytosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from direct assay /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1375407_at BG374229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374229 /DB_XREF=gi:13298701 /DB_XREF=UI-R-CV1-bsm-h-04-0-UI.s1 /CLONE=UI-R-CV1-bsm-h-04-0-UI /FEA=EST /CNT=9 /TID=Rn.76808.1 /TIER=Stack /STK=9 /UG=Rn.76808 /UG_TITLE=ESTs BG374229 Retinitis pigmentosa GTPase regulator interacting protein 1 Rpgrip1 305850 NM_001030035 0007601 // visual perception // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0042462 // eye photoreceptor cell development // inferred from electronic annotation /// 0042462 // eye photoreceptor cell development // not recorded 0005929 // cilium // inferred from electronic annotation /// 0005929 // cilium // not recorded /// 0005930 // axoneme // inferred from electronic annotation /// 0005930 // axoneme // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375408_at BF401660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401660 /DB_XREF=gi:11389635 /DB_XREF=UI-R-CA0-bgn-b-12-0-UI.s1 /CLONE=UI-R-CA0-bgn-b-12-0-UI /FEA=EST /CNT=9 /TID=Rn.64399.1 /TIER=Stack /STK=9 /UG=Rn.64399 /UG_TITLE=ESTs BF401660 1375409_at BE120369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120369 /DB_XREF=gi:8512474 /DB_XREF=UI-R-CA0-baq-f-05-0-UI.s1 /CLONE=UI-R-CA0-baq-f-05-0-UI /FEA=EST /CNT=9 /TID=Rn.53542.1 /TIER=Stack /STK=9 /UG=Rn.53542 /UG_TITLE=ESTs BE120369 1375410_at BF411840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411840 /DB_XREF=gi:11399829 /DB_XREF=UI-R-BT1-bmw-h-06-0-UI.s1 /CLONE=UI-R-BT1-bmw-h-06-0-UI /FEA=EST /CNT=54 /TID=Rn.22236.1 /TIER=Stack /STK=8 /UG=Rn.22236 /UG_TITLE=ESTs, Moderately similar to ROG MOUSE HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN G (M.musculus) BF411840 Similar to testes-specific heterogenous nuclear ribonucleoprotein G-T LOC365344 365344 XR_006886 /// XR_009075 1375411_at BI277002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277002 /DB_XREF=gi:14922458 /DB_XREF=UI-R-CY0-bxp-a-09-0-UI.s1 /CLONE=UI-R-CY0-bxp-a-09-0-UI /FEA=EST /CNT=29 /TID=Rn.3422.1 /TIER=Stack /STK=8 /UG=Rn.3422 /UG_TITLE=ESTs, Moderately similar to N4AM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B14.5A (H.sapiens) BI277002 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a) Ndufa7 299643 NM_001106772 0042773 // ATP synthesis coupled electron transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008083 // growth factor activity // inferred from electronic annotation /// 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from electronic annotation 1375412_at AI101331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101331 /DB_XREF=gi:3706249 /DB_XREF=EST210620 /CLONE=RBRBL56 /FEA=EST /CNT=24 /TID=Rn.15913.1 /TIER=Stack /STK=8 /UG=Rn.15913 /UG_TITLE=ESTs AI101331 arylsulfatase B Arsb 25227 NM_033443 0006914 // autophagy // inferred from direct assay /// 0007417 // central nervous system development // inferred from direct assay /// 0007584 // response to nutrient // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009268 // response to pH // inferred from direct assay /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0051597 // response to methylmercury // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0003943 // N-acetylgalactosamine-4-sulfatase activity // inferred from electronic annotation /// 0004065 // arylsulfatase activity // not recorded /// 0004065 // arylsulfatase activity // traceable author statement /// 0004065 // arylsulfatase activity // inferred from electronic annotation /// 0008484 // sulfuric ester hydrolase activity // inferred from direct assay /// 0008484 // sulfuric ester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375413_at AA799614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799614 /DB_XREF=gi:2862569 /DB_XREF=EST189111 /CLONE=RHEAD18 /FEA=EST /CNT=22 /TID=Rn.3802.1 /TIER=Stack /STK=8 /UG=Rn.3802 /UG_TITLE=ESTs AA799614 sirtuin (silent mating type information regulation 2 homolog) 2 (S. cerevisiae) Sirt2 361532 NM_001008368 0006342 // chromatin silencing // inferred from electronic annotation /// 0006476 // protein deacetylation // inferred from electronic annotation /// 0006476 // protein deacetylation // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045843 // negative regulation of striated muscle tissue development // not recorded /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005874 // microtubule // not recorded 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016811 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides // inferred from electronic annotation /// 0017136 // NAD-dependent histone deacetylase activity // not recorded /// 0033558 // protein deacetylase activity // not recorded /// 0035035 // histone acetyltransferase binding // not recorded /// 0042826 // histone deacetylase binding // not recorded /// 0042903 // tubulin deacetylase activity // not recorded /// 0043130 // ubiquitin binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation /// 0070403 // NAD binding // inferred from electronic annotation /// 0070403 // NAD binding // not recorded 1375414_at AA944572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944572 /DB_XREF=gi:3104488 /DB_XREF=EST200071 /CLONE=REMAL25 /FEA=EST /CNT=22 /TID=Rn.7756.1 /TIER=Stack /STK=8 /UG=Rn.7756 /UG_TITLE=ESTs, Weakly similar to JC5511 TATA-binding protein-associated factor II 31 - rat (R.norvegicus) AA944572 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor Taf9 373541 NM_001012463 /// NM_001037310 /// NM_184048 0006350 // transcription // inferred from electronic annotation /// 0006352 // transcription initiation // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0030307 // positive regulation of cell growth // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // not recorded /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0043966 // histone H3 acetylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0060760 // positive regulation of response to cytokine stimulus // inferred from electronic annotation /// 0060760 // positive regulation of response to cytokine stimulus // not recorded /// 0070555 // response to interleukin-1 // inferred from electronic annotation /// 0070555 // response to interleukin-1 // not recorded 0000125 // PCAF complex // inferred from electronic annotation /// 0000125 // PCAF complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from sequence or structural similarity /// 0005669 // transcription factor TFIID complex // inferred from electronic annotation /// 0005669 // transcription factor TFIID complex // not recorded /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0015030 // Cajal body // not recorded /// 0015030 // Cajal body // inferred from electronic annotation /// 0015030 // Cajal body // inferred from sequence or structural similarity /// 0030914 // STAGA complex // inferred from electronic annotation /// 0030914 // STAGA complex // not recorded /// 0033276 // transcription factor TFTC complex // inferred from electronic annotation /// 0033276 // transcription factor TFTC complex // not recorded /// 0070761 // pre-snoRNP complex // inferred from electronic annotation /// 0070761 // pre-snoRNP complex // not recorded /// 0071339 // MLL1 complex // not recorded /// 0071339 // MLL1 complex // inferred from sequence or structural similarity /// 0071339 // MLL1 complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0002039 // p53 binding // inferred from electronic annotation /// 0002039 // p53 binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0004017 // adenylate kinase activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0033613 // transcription activator binding // inferred from electronic annotation /// 0033613 // transcription activator binding // not recorded /// 0070742 // C2H2 zinc finger domain binding // inferred from electronic annotation /// 0070742 // C2H2 zinc finger domain binding // not recorded 1375415_at AI169233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169233 /DB_XREF=gi:3705541 /DB_XREF=EST215068 /CLONE=RKIBP12 /FEA=EST /CNT=20 /TID=Rn.3612.1 /TIER=Stack /STK=8 /UG=Rn.3612 /UG_TITLE=ESTs AI169233 LSM10, U7 small nuclear RNA associated Lsm10 366468 NM_001108976 0000084 // S phase of mitotic cell cycle // inferred from electronic annotation /// 0000084 // S phase of mitotic cell cycle // not recorded 0005683 // U7 snRNP // inferred from electronic annotation /// 0005683 // U7 snRNP // not recorded /// 0015030 // Cajal body // inferred from electronic annotation /// 0015030 // Cajal body // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0071208 // histone pre-mRNA DCP binding // inferred from electronic annotation /// 0071208 // histone pre-mRNA DCP binding // not recorded 1375416_at AI231165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231165 /DB_XREF=gi:3815045 /DB_XREF=EST227853 /CLONE=REMDG58 /FEA=EST /CNT=22 /TID=Rn.8644.1 /TIER=Stack /STK=8 /UG=Rn.8644 /UG_TITLE=ESTs, Moderately similar to ERC6_HUMAN EXCISION REPAIR PROTEIN ERCC-6 (H.sapiens) AI231165 family with sequence similarity 104, member A Fam104a 619573 NM_001034958 1375417_at BM391419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391419 /DB_XREF=gi:18191472 /DB_XREF=UI-R-DY0-ckr-a-17-0-UI.s1 /CLONE=UI-R-DY0-ckr-a-17-0-UI /FEA=EST /CNT=35 /TID=Rn.2952.1 /TIER=Stack /STK=8 /UG=Rn.2952 /UG_TITLE=ESTs, Weakly similar to S38170 SRP40 protein - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BM391419 zinc finger, MYND-type containing 8 Zmynd8 296374 NM_001100838 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375418_at BI275823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275823 /DB_XREF=gi:14920125 /DB_XREF=UI-R-CX0-bxh-a-04-0-UI.s1 /CLONE=UI-R-CX0-bxh-a-04-0-UI /FEA=EST /CNT=18 /TID=Rn.12067.1 /TIER=Stack /STK=8 /UG=Rn.12067 /UG_TITLE=ESTs, Weakly similar to T19997 hypothetical protein C47D12.1 - Caenorhabditis elegans (C.elegans) BI275823 transformation/transcription domain-associated protein Trrap 288471 NM_001105907 0007093 // mitotic cell cycle checkpoint // not recorded /// 0016578 // histone deubiquitination // not recorded /// 0043967 // histone H4 acetylation // not recorded /// 0043968 // histone H2A acetylation // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded /// 0030914 // STAGA complex // not recorded /// 0033276 // transcription factor TFTC complex // not recorded /// 0035267 // NuA4 histone acetyltransferase complex // not recorded 0003712 // transcription cofactor activity // not recorded /// 0003713 // transcription coactivator activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1375419_at AA998828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998828 /DB_XREF=gi:4292556 /DB_XREF=UI-R-C0-ii-e-02-0-UI.s1 /CLONE=UI-R-C0-ii-e-02-0-UI /FEA=EST /CNT=17 /TID=Rn.12968.1 /TIER=Stack /STK=8 /UG=Rn.12968 /UG_TITLE=ESTs, Weakly similar to densin-180 (Rattus norvegicus) (R.norvegicus) AA998828 leucine rich repeat containing 28 Lrrc28 361588 NM_001108486 0005515 // protein binding // inferred from electronic annotation 1375420_at AI170535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170535 /DB_XREF=gi:3710575 /DB_XREF=EST216463 /CLONE=RLUCO92 /FEA=EST /CNT=19 /TID=Rn.22267.1 /TIER=Stack /STK=8 /UG=Rn.22267 /UG_TITLE=ESTs AI170535 tumor protein p53 inducible protein 11 Tp53i11 311209 NM_001107749 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1375421_a_at AI600019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600019 /DB_XREF=gi:4609067 /DB_XREF=EST251722 /CLONE=REMDO31 /FEA=EST /CNT=15 /TID=Rn.18446.2 /TIER=Stack /STK=8 /UG=Rn.18446 /UG_TITLE=Rattus norvegicus mRNA for neurodegeneration associated protein 1, complete cds AI600019 praja 2, RING-H2 motif containing Pja2 192256 NM_138896 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375422_at AI710284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI710284 /DB_XREF=gi:5000060 /DB_XREF=UI-R-AB1-yt-f-08-0-UI.s1 /CLONE=UI-R-AB1-yt-f-08-0-UI /FEA=EST /CNT=17 /TID=Rn.25004.2 /TIER=Stack /STK=8 /UG=Rn.25004 /UG_TITLE=ESTs AI710284 1375423_at BE098181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098181 /DB_XREF=gi:8490009 /DB_XREF=UI-R-BJ1-ata-d-05-0-UI.s1 /CLONE=UI-R-BJ1-ata-d-05-0-UI /FEA=EST /CNT=14 /TID=Rn.9433.1 /TIER=Stack /STK=8 /UG=Rn.9433 /UG_TITLE=ESTs BE098181 hypothetical protein LOC689959 LOC689959 689959 NM_001109559 1375424_at BE107525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107525 /DB_XREF=gi:8499630 /DB_XREF=UI-R-BS1-ayu-g-02-0-UI.s1 /CLONE=UI-R-BS1-ayu-g-02-0-UI /FEA=EST /CNT=22 /TID=Rn.33685.2 /TIER=Stack /STK=8 /UG=Rn.33685 /LL=64040 /UG_GENE=Aldh9a1 /UG_TITLE=aldehyde dehydrogenase family 9, subfamily A1 BE107525 ARP2 actin-related protein 2 homolog (yeast) Actr2 289820 NM_001009268 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1375425_at BF395126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395126 /DB_XREF=gi:11380052 /DB_XREF=UI-R-CM0-bji-f-07-0-UI.s1 /CLONE=UI-R-CM0-bji-f-07-0-UI /FEA=EST /CNT=17 /TID=Rn.8370.1 /TIER=Stack /STK=8 /UG=Rn.8370 /UG_TITLE=ESTs BF395126 intraflagellar transport 20 homolog (Chlamydomonas) Ift20 287541 NM_001105815 0005794 // Golgi apparatus // not recorded /// 0005813 // centrosome // not recorded /// 0005814 // centriole // not recorded /// 0005929 // cilium // not recorded /// 0030992 // intraflagellar transport particle B // not recorded 0005515 // protein binding // not recorded 1375426_a_at BI295086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295086 /DB_XREF=gi:14958180 /DB_XREF=UI-R-DK0-cef-f-08-0-UI.s1 /CLONE=UI-R-DK0-cef-f-08-0-UI /FEA=EST /CNT=16 /TID=Rn.22398.2 /TIER=Stack /STK=8 /UG=Rn.22398 /LL=171137 /UG_GENE=Marta1 /UG_TITLE=MAP2 RNA trans-acting protein MARTA1 BI295086 KH-type splicing regulatory protein Khsrp 171137 NM_133602 0006350 // transcription // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1375427_at AI411580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411580 /DB_XREF=gi:4255084 /DB_XREF=EST239874 /CLONE=ROVET33 /FEA=EST /CNT=15 /TID=Rn.13052.1 /TIER=Stack /STK=8 /UG=Rn.13052 /UG_TITLE=ESTs, Highly similar to RANG MOUSE RAN-SPECIFIC GTPASE-ACTIVATING PROTEIN (M.musculus) AI411580 RAN binding protein 1 Ranbp1 360739 NM_001108324 0007051 // spindle organization // not recorded /// 0046604 // positive regulation of mitotic centrosome separation // not recorded /// 0046907 // intracellular transport // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // not recorded 0005515 // protein binding // not recorded 1375428_at BE099979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099979 /DB_XREF=gi:8491863 /DB_XREF=UI-R-BJ1-atr-d-01-0-UI.s1 /CLONE=UI-R-BJ1-atr-d-01-0-UI /FEA=EST /CNT=14 /TID=Rn.8051.1 /TIER=Stack /STK=8 /UG=Rn.8051 /UG_TITLE=ESTs BE099979 cellular repressor of E1A-stimulated genes 1 Creg1 289185 NM_001105966 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0010181 // FMN binding // inferred from electronic annotation 1375429_at BI294768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294768 /DB_XREF=gi:14957544 /DB_XREF=UI-R-DK0-ceb-h-07-0-UI.s1 /CLONE=UI-R-DK0-ceb-h-07-0-UI /FEA=EST /CNT=13 /TID=Rn.22318.1 /TIER=Stack /STK=8 /UG=Rn.22318 /UG_TITLE=ESTs BI294768 ZH16 protein Zh16 100190937 1375430_at BM389077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389077 /DB_XREF=gi:18189130 /DB_XREF=UI-R-DZ0-cko-n-05-0-UI.s1 /CLONE=UI-R-DZ0-cko-n-05-0-UI /FEA=EST /CNT=13 /TID=Rn.23970.1 /TIER=Stack /STK=8 /UG=Rn.23970 /UG_TITLE=ESTs BM389077 membrane magnesium transporter 2 Mmgt2 303211 NM_001013967 0006810 // transport // inferred from electronic annotation /// 0006824 // cobalt ion transport // not recorded /// 0006824 // cobalt ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // not recorded /// 0006828 // manganese ion transport // inferred from electronic annotation /// 0006828 // manganese ion transport // not recorded /// 0015674 // di-, tri-valent inorganic cation transport // not recorded /// 0015674 // di-, tri-valent inorganic cation transport // inferred from electronic annotation /// 0015675 // nickel ion transport // inferred from electronic annotation /// 0015675 // nickel ion transport // not recorded /// 0015693 // magnesium ion transport // not recorded /// 0015693 // magnesium ion transport // inferred from sequence or structural similarity /// 0015693 // magnesium ion transport // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0035434 // copper ion transmembrane transport // not recorded /// 0035444 // nickel ion transmembrane transport // not recorded /// 0071421 // manganese ion transmembrane transport // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from sequence or structural similarity /// 0005769 // early endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation 0005375 // copper ion transmembrane transporter activity // inferred from electronic annotation /// 0005375 // copper ion transmembrane transporter activity // not recorded /// 0005384 // manganese ion transmembrane transporter activity // inferred from electronic annotation /// 0005384 // manganese ion transmembrane transporter activity // not recorded /// 0015082 // di-, tri-valent inorganic cation transmembrane transporter activity // not recorded /// 0015082 // di-, tri-valent inorganic cation transmembrane transporter activity // inferred from electronic annotation /// 0015087 // cobalt ion transmembrane transporter activity // inferred from electronic annotation /// 0015087 // cobalt ion transmembrane transporter activity // not recorded /// 0015095 // magnesium ion transmembrane transporter activity // not recorded /// 0015095 // magnesium ion transmembrane transporter activity // inferred from sequence or structural similarity /// 0015095 // magnesium ion transmembrane transporter activity // inferred from electronic annotation /// 0015099 // nickel ion transmembrane transporter activity // inferred from electronic annotation /// 0015099 // nickel ion transmembrane transporter activity // not recorded 1375431_at AW531861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531861 /DB_XREF=gi:7174275 /DB_XREF=UI-R-BS0-amj-b-05-0-UI.s1 /CLONE=UI-R-BS0-amj-b-05-0-UI /FEA=EST /CNT=14 /TID=Rn.1149.1 /TIER=Stack /STK=8 /UG=Rn.1149 /UG_TITLE=ESTs AW531861 similar to CG31122-PA RGD1306941 316406 NM_001108219 1375432_at AI171599 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171599 /DB_XREF=gi:4134636 /DB_XREF=EST217566 /CLONE=RMUBN05 /FEA=EST /CNT=13 /TID=Rn.22355.1 /TIER=Stack /STK=8 /UG=Rn.22355 /UG_TITLE=ESTs, Highly similar to CSL4_HUMAN 3-5 exoribonuclease CSL4 homolog (CGI-108 protein) (H.sapiens) AI171599 similar to exosome component 1 LOC679140 679140 XM_001054866 /// XM_002725796 1375433_at AI412473 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412473 /DB_XREF=gi:4255977 /DB_XREF=EST240772 /CLONE=RBRDO84 /FEA=EST /CNT=12 /TID=Rn.19932.1 /TIER=Stack /STK=8 /UG=Rn.19932 /UG_TITLE=ESTs AI412473 dispatched homolog 2 (Drosophila) Disp2 311324 NM_001107759 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1375434_at AI576484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576484 /DB_XREF=gi:4560860 /DB_XREF=UI-R-G0-us-f-11-0-UI.s1 /CLONE=UI-R-G0-us-f-11-0-UI /FEA=EST /CNT=12 /TID=Rn.38540.1 /TIER=Stack /STK=8 /UG=Rn.38540 /UG_TITLE=ESTs, Highly similar to FACTOR VIII INTRON 22 PROTEIN (M.musculus) AI576484 Coagulation factor VIII-associated (intronic transcript) 1 F8a1 501661 NM_001109323 0005634 // nucleus // not recorded 0005488 // binding // inferred from electronic annotation 1375435_at AW251686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251686 /DB_XREF=gi:6595277 /DB_XREF=UI-R-BJ0-adp-f-11-0-UI.s1 /CLONE=UI-R-BJ0-adp-f-11-0-UI /FEA=EST /CNT=12 /TID=Rn.37827.1 /TIER=Stack /STK=8 /UG=Rn.37827 /UG_TITLE=ESTs AW251686 hypothetical LOC308765 RGD1311021 308765 NM_001107530 1375436_at BF416417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416417 /DB_XREF=gi:11404406 /DB_XREF=UI-R-CA0-bks-d-03-0-UI.s1 /CLONE=UI-R-CA0-bks-d-03-0-UI /FEA=EST /CNT=12 /TID=Rn.17436.1 /TIER=Stack /STK=8 /UG=Rn.17436 /UG_TITLE=ESTs BF416417 nicotinate phosphoribosyltransferase domain containing 1 Naprt1 315085 NM_207609 0006769 // nicotinamide metabolic process // not recorded /// 0006979 // response to oxidative stress // not recorded /// 0006979 // response to oxidative stress // inferred from sequence or structural similarity /// 0009435 // NAD biosynthetic process // inferred from direct assay /// 0009435 // NAD biosynthetic process // inferred from electronic annotation /// 0019358 // nicotinate nucleotide salvage // inferred from electronic annotation /// 0019363 // pyridine nucleotide biosynthetic process // inferred from electronic annotation /// 0019674 // NAD metabolic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation 0004514 // nicotinate-nucleotide diphosphorylase (carboxylating) activity // inferred from electronic annotation /// 0004516 // nicotinate phosphoribosyltransferase activity // inferred from direct assay /// 0004516 // nicotinate phosphoribosyltransferase activity // not recorded /// 0004516 // nicotinate phosphoribosyltransferase activity // inferred from sequence or structural similarity /// 0004516 // nicotinate phosphoribosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1375437_at BI298111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298111 /DB_XREF=gi:14974391 /DB_XREF=UI-R-CV2-chf-e-04-0-UI.s1 /CLONE=UI-R-CV2-chf-e-04-0-UI /FEA=EST /CNT=14 /TID=Rn.22718.1 /TIER=Stack /STK=8 /UG=Rn.22718 /UG_TITLE=ESTs BI298111 1375438_at AA964687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964687 /DB_XREF=gi:4279561 /DB_XREF=UI-R-E1-gq-b-07-0-UI.s1 /CLONE=UI-R-E1-gq-b-07-0-UI /FEA=EST /CNT=13 /TID=Rn.12617.1 /TIER=Stack /STK=8 /UG=Rn.12617 /UG_TITLE=ESTs AA964687 golgi SNAP receptor complex member 2 Gosr2 64154 NM_031685 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0000139 // Golgi membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1375439_at BF417010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417010 /DB_XREF=gi:11404999 /DB_XREF=UI-R-CN0-bkw-h-08-0-UI.s1 /CLONE=UI-R-CN0-bkw-h-08-0-UI /FEA=EST /CNT=13 /TID=Rn.23448.1 /TIER=Stack /STK=8 /UG=Rn.23448 /UG_TITLE=ESTs, Weakly similar to Y124_HUMAN HYPOTHETICAL PROTEIN KIAA0124 (H.sapiens) BF417010 WD repeat domain 18 Wdr18 314617 NM_001039027 1375440_at BI283709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283709 /DB_XREF=gi:14935719 /DB_XREF=UI-R-CW0s-ccg-g-12-0-UI.s1 /CLONE=UI-R-CW0s-ccg-g-12-0-UI /FEA=EST /CNT=12 /TID=Rn.22468.1 /TIER=Stack /STK=8 /UG=Rn.22468 /UG_TITLE=ESTs, Weakly similar to CYPM RAT PEPTIDYL-PROLYL CIS-TRANS ISOMERASE, MITOCHONDRIAL PRECURSOR (R.norvegicus) BI283709 peptidylprolyl isomerase (cyclophilin)-like 2 Ppil2 360746 NM_001017383 0000209 // protein polyubiquitination // not recorded /// 0006457 // protein folding // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005796 // Golgi lumen // not recorded 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation 1375441_at BI278468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278468 /DB_XREF=gi:14925340 /DB_XREF=UI-R-CZ0-byh-a-06-0-UI.s1 /CLONE=UI-R-CZ0-byh-a-06-0-UI /FEA=EST /CNT=12 /TID=Rn.12146.1 /TIER=Stack /STK=8 /UG=Rn.12146 /UG_TITLE=ESTs, Highly similar to SYS_HUMAN SERYL-TRNA SYNTHETASE (H.sapiens) BI278468 seryl-tRNA synthetase Sars 266975 NM_001007606 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006434 // seryl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004828 // serine-tRNA ligase activity // inferred from electronic annotation /// 0004828 // serine-tRNA ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1375442_at BG375380 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375380 /DB_XREF=gi:13299852 /DB_XREF=UI-R-CV1-bsz-f-12-0-UI.s1 /CLONE=UI-R-CV1-bsz-f-12-0-UI /FEA=EST /CNT=11 /TID=Rn.34363.1 /TIER=Stack /STK=8 /UG=Rn.34363 /UG_TITLE=ESTs, Moderately similar to MP10_HUMAN U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10 (H.sapiens) BG375380 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) Mphosph10 293828 NM_001106340 0006364 // rRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375443_at BF420090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420090 /DB_XREF=gi:11408079 /DB_XREF=UI-R-BJ2-bpm-g-10-0-UI.s1 /CLONE=UI-R-BJ2-bpm-g-10-0-UI /FEA=EST /CNT=11 /TID=Rn.22319.1 /TIER=Stack /STK=8 /UG=Rn.22319 /UG_TITLE=ESTs BF420090 similar to gene trap ROSA b-geo 22 LOC691093 691093 NM_001109621 0007165 // signal transduction // inferred from electronic annotation /// 0007288 // sperm axoneme assembly // not recorded /// 0030534 // adult behavior // not recorded 0008603 // cAMP-dependent protein kinase regulator activity // inferred from electronic annotation 1375444_at BF409829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409829 /DB_XREF=gi:11397804 /DB_XREF=UI-R-CA1-bjr-c-08-0-UI.s1 /CLONE=UI-R-CA1-bjr-c-08-0-UI /FEA=EST /CNT=13 /TID=Rn.8074.2 /TIER=Stack /STK=8 /UG=Rn.8074 /UG_TITLE=ESTs, Highly similar to adaptor-related protein complex AP-3, delta subunit (Mus musculus) (M.musculus) BF409829 adaptor-related protein complex 3, delta 1 subunit Ap3d1 314633 NM_001100719 0006886 // intracellular protein transport // not recorded /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0019882 // antigen processing and presentation // not recorded /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0048007 // antigen processing and presentation, exogenous lipid antigen via MHC class Ib // not recorded /// 0048007 // antigen processing and presentation, exogenous lipid antigen via MHC class Ib // inferred from electronic annotation /// 0051138 // positive regulation of NK T cell differentiation // not recorded /// 0051138 // positive regulation of NK T cell differentiation // inferred from electronic annotation /// 0061088 // regulation of sequestering of zinc ion // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 1375445_at BG375795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375795 /DB_XREF=gi:13300267 /DB_XREF=UI-R-CS0-btf-e-06-0-UI.s1 /CLONE=UI-R-CS0-btf-e-06-0-UI /FEA=EST /CNT=11 /TID=Rn.24084.1 /TIER=Stack /STK=8 /UG=Rn.24084 /UG_TITLE=ESTs BG375795 kyphoscoliosis peptidase Ky 315962 NM_001108180 0007517 // muscle organ development // not recorded /// 0007528 // neuromuscular junction development // not recorded 1375446_at BE104397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104397 /DB_XREF=gi:8496497 /DB_XREF=UI-R-BX0-aro-d-09-0-UI.s1 /CLONE=UI-R-BX0-aro-d-09-0-UI /FEA=EST /CNT=11 /TID=Rn.24025.1 /TIER=Stack /STK=8 /UG=Rn.24025 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) BE104397 zinc finger protein 498 Znf498 363872 NM_001108851 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375447_at BI291231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291231 /DB_XREF=gi:14950578 /DB_XREF=UI-R-CV2-cgm-g-10-0-UI.s1 /CLONE=UI-R-CV2-cgm-g-10-0-UI /FEA=EST /CNT=10 /TID=Rn.29245.1 /TIER=Stack /STK=8 /UG=Rn.29245 /UG_TITLE=ESTs, Moderately similar to GTB1 MOUSE GTP-BINDING PROTEIN 1 (M.musculus) BI291231 GTP binding protein 1 Gtpbp1 300077 NM_001130496 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1375448_at BM391628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391628 /DB_XREF=gi:18191681 /DB_XREF=UI-R-CN1-cjs-a-24-0-UI.s1 /CLONE=UI-R-CN1-cjs-a-24-0-UI /FEA=EST /CNT=10 /TID=Rn.25309.1 /TIER=Stack /STK=8 /UG=Rn.25309 /UG_TITLE=ESTs BM391628 optic atrophy 3 (human) Opa3 308409 NM_001107486 0007601 // visual perception // not recorded 0005739 // mitochondrion // not recorded 1375449_at BI296717 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296717 /DB_XREF=gi:14961423 /DB_XREF=UI-R-CV2-cgv-e-05-0-UI.s1 /CLONE=UI-R-CV2-cgv-e-05-0-UI /FEA=EST /CNT=10 /TID=Rn.66608.1 /TIER=Stack /STK=8 /UG=Rn.66608 /UG_TITLE=ESTs BI296717 1375450_at BF403864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403864 /DB_XREF=gi:11391839 /DB_XREF=UI-R-CA1-bix-n-01-0-UI.s1 /CLONE=UI-R-CA1-bix-n-01-0-UI /FEA=EST /CNT=10 /TID=Rn.27320.1 /TIER=Stack /STK=8 /UG=Rn.27320 /UG_TITLE=ESTs BF403864 serologically defined colon cancer antigen 1 Sdccag1 100322884 NM_001170586 /// XM_002726704 /// XM_002729650 1375451_at BE105268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105268 /DB_XREF=gi:8497370 /DB_XREF=UI-R-BX0-asb-e-03-0-UI.s1 /CLONE=UI-R-BX0-asb-e-03-0-UI /FEA=EST /CNT=10 /TID=Rn.19007.1 /TIER=Stack /STK=8 /UG=Rn.19007 /UG_TITLE=ESTs, Weakly similar to B48013 proline-rich proteoglycan 2 precursor, parotid - rat (R.norvegicus) BE105268 pecanex-like 3 (Drosophila) Pcnxl3 309167 XM_001074181 /// XM_002725774 /// XM_002728857 /// XM_219515 0016021 // integral to membrane // inferred from electronic annotation 1375452_at AI177180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177180 /DB_XREF=gi:3727818 /DB_XREF=EST220787 /CLONE=ROVCB82 /FEA=EST /CNT=10 /TID=Rn.8205.2 /TIER=Stack /STK=8 /UG=Rn.8205 /UG_TITLE=ESTs, Moderately similar to MEA6_HUMAN MENINGIOMA-EXPRESSED ANTIGEN 611 (MEA6) (MEA11) (H.sapiens) AI177180 1375453_at BM392052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392052 /DB_XREF=gi:18192105 /DB_XREF=UI-R-DO1-ckp-c-05-0-UI.s1 /CLONE=UI-R-DO1-ckp-c-05-0-UI /FEA=EST /CNT=10 /TID=Rn.20927.1 /TIER=Stack /STK=8 /UG=Rn.20927 /UG_TITLE=ESTs, Moderately similar to T00329 hypothetical protein KIAA0553 (H.sapiens) BM392052 hypothetical protein LOC688211 LOC688211 688211 XM_001081514 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1375454_at AI578736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578736 /DB_XREF=gi:4563112 /DB_XREF=UI-R-AA0-wq-e-11-0-UI.s1 /CLONE=UI-R-AA0-wq-e-11-0-UI /FEA=EST /CNT=10 /TID=Rn.38934.1 /TIER=Stack /STK=8 /UG=Rn.38934 /UG_TITLE=ESTs AI578736 Similar to MGC15476 protein RGD1563892 499088 NM_001191947 /// XM_002725536 /// XM_574375 1375455_at AI716086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716086 /DB_XREF=gi:5033387 /DB_XREF=UI-R-Y0-abd-e-02-0-UI.s1 /CLONE=UI-R-Y0-abd-e-02-0-UI /FEA=EST /CNT=10 /TID=Rn.39165.1 /TIER=Stack /STK=8 /UG=Rn.39165 /UG_TITLE=ESTs, Weakly similar to VISININ-LIKE PROTEIN 3 (R.norvegicus) AI716086 guanylate cyclase activator 1a (retina) Guca1a 301233 NM_001106887 0007601 // visual perception // not recorded /// 0007602 // phototransduction // not recorded /// 0030828 // positive regulation of cGMP biosynthetic process // inferred from direct assay /// 0031279 // regulation of cyclase activity // not recorded /// 0031282 // regulation of guanylate cyclase activity // not recorded /// 0031284 // positive regulation of guanylate cyclase activity // inferred from direct assay 0001750 // photoreceptor outer segment // inferred from direct assay /// 0001917 // photoreceptor inner segment // inferred from direct assay /// 0005624 // membrane fraction // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0008048 // calcium sensitive guanylate cyclase activator activity // inferred from direct assay /// 0008048 // calcium sensitive guanylate cyclase activator activity // not recorded /// 0030249 // guanylate cyclase regulator activity // not recorded 1375456_at AI007882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI007882 /DB_XREF=gi:3221714 /DB_XREF=EST202333 /CLONE=RBRAX33 /FEA=EST /CNT=10 /TID=Rn.7522.1 /TIER=Stack /STK=8 /UG=Rn.7522 /UG_TITLE=ESTs, Weakly similar to BEM-1BUD5 suppressor-like (Caenorhabditis elegans) (C.elegans) AI007882 Family with sequence similarity 108, member B1 Fam108b1 309399 NM_001014028 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1375457_at AA875011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875011 /DB_XREF=gi:4230893 /DB_XREF=UI-R-E0-cb-d-07-0-UI.s1 /CLONE=UI-R-E0-cb-d-07-0-UI /FEA=EST /CNT=10 /TID=Rn.24026.1 /TIER=Stack /STK=8 /UG=Rn.24026 /UG_TITLE=ESTs, Weakly similar to AMP1_HUMAN PUTATIVE METHIONINE AMINOPEPTIDASE 1 (H.sapiens) AA875011 methionine aminopeptidase 1D Map1d 311748 NM_001107812 0006508 // proteolysis // inferred from electronic annotation /// 0009987 // cellular process // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008235 // metalloexopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375458_at AI232205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232205 /DB_XREF=gi:4135729 /DB_XREF=EST228893 /CLONE=RKIBY26 /FEA=EST /CNT=10 /TID=Rn.22774.2 /TIER=Stack /STK=8 /UG=Rn.22774 /UG_TITLE=Rattus norvegicus asparaginase-like sperm autoantigen mRNA, complete cds AI232205 Asparaginase like 1 Asrgl1 246307 NM_145089 0033345 // asparagine catabolic process via L-aspartate // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0003948 // N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity // inferred from direct assay /// 0004067 // asparaginase activity // inferred from direct assay /// 0004067 // asparaginase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1375459_at BE113419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113419 /DB_XREF=gi:8505524 /DB_XREF=UI-R-BJ1-awl-b-05-0-UI.s1 /CLONE=UI-R-BJ1-awl-b-05-0-UI /FEA=EST /CNT=13 /TID=Rn.19443.1 /TIER=Stack /STK=8 /UG=Rn.19443 /UG_TITLE=ESTs, Weakly similar to CLK3 RAT PROTEIN KINASE CLK3 (R.norvegicus) BE113419 SFRS protein kinase 2 Srpk2 296753 NM_001106575 0000245 // spliceosome assembly // inferred from electronic annotation /// 0000245 // spliceosome assembly // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1375460_at BE113248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113248 /DB_XREF=gi:8505353 /DB_XREF=UI-R-BJ1-awd-c-04-0-UI.s1 /CLONE=UI-R-BJ1-awd-c-04-0-UI /FEA=EST /CNT=12 /TID=Rn.12010.1 /TIER=Stack /STK=8 /UG=Rn.12010 /UG_TITLE=ESTs, Highly similar to serine protease (H.sapiens) BE113248 LSM12 homolog (S. cerevisiae) Lsm12 287731 NM_001105843 0005515 // protein binding // not recorded 1375461_at BI285588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285588 /DB_XREF=gi:14939398 /DB_XREF=UI-R-CW0s-ccb-h-07-0-UI.s1 /CLONE=UI-R-CW0s-ccb-h-07-0-UI /FEA=EST /CNT=11 /TID=Rn.31959.1 /TIER=Stack /STK=8 /UG=Rn.31959 /UG_TITLE=ESTs BI285588 ATP5S-like Atp5sl 361520 NM_001009705 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1375462_at BE109177 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109177 /DB_XREF=gi:8501282 /DB_XREF=UI-R-BS1-azb-g-10-0-UI.s1 /CLONE=UI-R-BS1-azb-g-10-0-UI /FEA=EST /CNT=10 /TID=Rn.23520.1 /TIER=Stack /STK=8 /UG=Rn.23520 /UG_TITLE=ESTs BE109177 1375463_at BG380847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380847 /DB_XREF=gi:13305319 /DB_XREF=UI-R-CT0-buc-b-03-0-UI.s1 /CLONE=UI-R-CT0-buc-b-03-0-UI /FEA=EST /CNT=10 /TID=Rn.21924.1 /TIER=Stack /STK=8 /UG=Rn.21924 /UG_TITLE=ESTs BG380847 similar to Ski protein RGD1565591 313757 XM_001077382 /// XM_233731 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1375464_at BI290815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290815 /DB_XREF=gi:14949748 /DB_XREF=UI-R-DK0-cga-g-02-0-UI.s1 /CLONE=UI-R-DK0-cga-g-02-0-UI /FEA=EST /CNT=10 /TID=Rn.3332.1 /TIER=Stack /STK=8 /UG=Rn.3332 /UG_TITLE=ESTs BI290815 V-set and immunoglobulin domain containing 10 like Vsig10l 308556 XM_001080344 /// XM_218633 1375465_at BG374268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374268 /DB_XREF=gi:13298740 /DB_XREF=UI-R-CV1-bsn-d-02-0-UI.s1 /CLONE=UI-R-CV1-bsn-d-02-0-UI /FEA=EST /CNT=9 /TID=Rn.35222.1 /TIER=Stack /STK=8 /UG=Rn.35222 /UG_TITLE=ESTs, Highly similar to OTX2 RAT HOMEOBOX PROTEIN OTX2 (R.norvegicus) BG374268 orthodenticle homeobox 2 Otx2 305858 NM_001100566 0001708 // cell fate specification // inferred from electronic annotation /// 0001708 // cell fate specification // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0007492 // endoderm development // inferred from electronic annotation /// 0007492 // endoderm development // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0030901 // midbrain development // inferred from electronic annotation /// 0030901 // midbrain development // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0042706 // eye photoreceptor cell fate commitment // inferred from electronic annotation /// 0042706 // eye photoreceptor cell fate commitment // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0048856 // anatomical structure development // not recorded /// 0048856 // anatomical structure development // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030426 // growth cone // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1375466_at AI228550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228550 /DB_XREF=gi:3812437 /DB_XREF=EST225245 /CLONE=RBRCW35 /FEA=EST /CNT=9 /TID=Rn.12112.1 /TIER=Stack /STK=8 /UG=Rn.12112 /UG_TITLE=ESTs AI228550 1375467_at BI298372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298372 /DB_XREF=gi:14974652 /DB_XREF=UI-R-CV2-cho-e-08-0-UI.s1 /CLONE=UI-R-CV2-cho-e-08-0-UI /FEA=EST /CNT=9 /TID=Rn.7004.2 /TIER=Stack /STK=8 /UG=Rn.7004 /UG_TITLE=ESTs BI298372 similar to zinc finger protein 740 LOC683801 683801 XM_001067514 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1375468_at AW252983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252983 /DB_XREF=gi:6596574 /DB_XREF=UI-R-BJ0-aeq-a-02-0-UI.s1 /CLONE=UI-R-BJ0-aeq-a-02-0-UI /FEA=EST /CNT=9 /TID=Rn.22862.1 /TIER=Stack /STK=8 /UG=Rn.22862 /UG_TITLE=ESTs, Highly similar to MRP5_RAT MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 5 (R.norvegicus) AW252983 ATP-binding cassette, sub-family C (CFTR/MRP), member 5 Abcc5 116721 NM_053924 0006810 // transport // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0055085 // transmembrane transport // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 1375469_at BE111847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111847 /DB_XREF=gi:8503952 /DB_XREF=UI-R-BJ1-avz-e-01-0-UI.s1 /CLONE=UI-R-BJ1-avz-e-01-0-UI /FEA=EST /CNT=9 /TID=Rn.23168.1 /TIER=Stack /STK=8 /UG=Rn.23168 /UG_TITLE=ESTs, Highly similar to SN24_HUMAN POSSIBLE GLOBAL TRANSCRIPTION ACTIVATOR SNF2L4 (H.sapiens) BE111847 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 Smarca4 171379 NM_134368 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001832 // blastocyst growth // not recorded /// 0001832 // blastocyst growth // inferred from electronic annotation /// 0001835 // blastocyst hatching // not recorded /// 0001835 // blastocyst hatching // inferred from electronic annotation /// 0006337 // nucleosome disassembly // inferred from direct assay /// 0006338 // chromatin remodeling // not recorded /// 0006346 // methylation-dependent chromatin silencing // not recorded /// 0006346 // methylation-dependent chromatin silencing // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007403 // glial cell fate determination // not recorded /// 0007403 // glial cell fate determination // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // not recorded /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0030902 // hindbrain development // not recorded /// 0030902 // hindbrain development // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048730 // epidermis morphogenesis // not recorded /// 0048730 // epidermis morphogenesis // inferred from electronic annotation /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0060347 // heart trabecula formation // not recorded /// 0060347 // heart trabecula formation // inferred from electronic annotation 0000792 // heterochromatin // not recorded /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005719 // nuclear euchromatin // not recorded /// 0005719 // nuclear euchromatin // inferred from electronic annotation /// 0005726 // perichromatin fibrils // not recorded /// 0005726 // perichromatin fibrils // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0016514 // SWI/SNF complex // inferred from direct assay /// 0016514 // SWI/SNF complex // not recorded /// 0070603 // SWI/SNF-type complex // not recorded /// 0071564 // npBAF complex // not recorded /// 0071564 // npBAF complex // inferred from sequence or structural similarity /// 0071564 // npBAF complex // inferred from electronic annotation /// 0071565 // nBAF complex // not recorded /// 0071565 // nBAF complex // inferred from sequence or structural similarity /// 0071565 // nBAF complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0002039 // p53 binding // not recorded /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from sequence or structural similarity /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred by curator /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0047485 // protein N-terminus binding // not recorded /// 0070577 // histone acetyl-lysine binding // not recorded 1375470_at AW252815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252815 /DB_XREF=gi:6596406 /DB_XREF=UI-R-BJ0-ael-a-09-0-UI.s1 /CLONE=UI-R-BJ0-ael-a-09-0-UI /FEA=EST /CNT=9 /TID=Rn.41049.1 /TIER=Stack /STK=8 /UG=Rn.41049 /UG_TITLE=ESTs, Weakly similar to TRBM MOUSE THROMBOMODULIN PRECURSOR (M.musculus) AW252815 CD248 molecule, endosialin Cd248 293669 NM_001106325 0005737 // cytoplasm // not recorded 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1375471_at BF394018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394018 /DB_XREF=gi:11378847 /DB_XREF=UI-R-CA0-bgx-e-01-0-UI.s1 /CLONE=UI-R-CA0-bgx-e-01-0-UI /FEA=EST /CNT=9 /TID=Rn.64236.1 /TIER=Stack /STK=8 /UG=Rn.64236 /UG_TITLE=ESTs, Weakly similar to cyclin-dependent kinase 5, regulatory subunit 1 (p35) (Rattus norvegicus) (R.norvegicus) BF394018 cyclin-dependent kinase 5, regulatory subunit 2 (p39) Cdk5r2 501164 NM_001109309 0016533 // cyclin-dependent protein kinase 5 holoenzyme complex // inferred from electronic annotation 0016534 // cyclin-dependent protein kinase 5 activator activity // inferred from electronic annotation 1375472_at BF394923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394923 /DB_XREF=gi:11379883 /DB_XREF=UI-R-CA0-bgf-e-03-0-UI.s1 /CLONE=UI-R-CA0-bgf-e-03-0-UI /FEA=EST /CNT=9 /TID=Rn.61579.1 /TIER=Stack /STK=8 /UG=Rn.61579 /UG_TITLE=ESTs BF394923 1375473_at BI296644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296644 /DB_XREF=gi:14961274 /DB_XREF=UI-R-CV2-cgt-f-06-0-UI.s1 /CLONE=UI-R-CV2-cgt-f-06-0-UI /FEA=EST /CNT=9 /TID=Rn.38095.1 /TIER=Stack /STK=8 /UG=Rn.38095 /UG_TITLE=ESTs BI296644 1375474_at AW254459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254459 /DB_XREF=gi:6598050 /DB_XREF=UI-R-BJ0-adr-c-11-0-UI.s1 /CLONE=UI-R-BJ0-adr-c-11-0-UI /FEA=EST /CNT=9 /TID=Rn.23212.1 /TIER=Stack /STK=8 /UG=Rn.23212 /UG_TITLE=ESTs, Weakly similar to CNBP_HUMAN CELLULAR NUCLEIC ACID BINDING PROTEIN (R.norvegicus) AW254459 Zinc finger, CCHC domain containing 3 Zcchc3 690005 XM_001072887 /// XM_002726251 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375475_at BE111304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111304 /DB_XREF=gi:8503409 /DB_XREF=UI-R-BJ1-ava-c-02-0-UI.s1 /CLONE=UI-R-BJ1-ava-c-02-0-UI /FEA=EST /CNT=9 /TID=Rn.59537.1 /TIER=Stack /STK=8 /UG=Rn.59537 /UG_TITLE=ESTs BE111304 1375476_at AI717476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717476 /DB_XREF=gi:5034732 /DB_XREF=UI-R-Y0-acb-f-03-0-UI.s1 /CLONE=UI-R-Y0-acb-f-03-0-UI /FEA=EST /CNT=9 /TID=Rn.35568.1 /TIER=Stack /STK=8 /UG=Rn.35568 /UG_TITLE=ESTs, Highly similar to GLYCOGEN PHOSPHORYLASE, MUSCLE FORM (R.norvegicus) AI717476 phosphorylase, glycogen, muscle Pygm 24701 NM_012638 0001666 // response to hypoxia // inferred from direct assay /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from direct assay /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005980 // glycogen catabolic process // inferred from direct assay /// 0005980 // glycogen catabolic process // not recorded /// 0005980 // glycogen catabolic process // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from direct assay /// 0010033 // response to organic substance // inferred from direct assay /// 0051591 // response to cAMP // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0016529 // sarcoplasmic reticulum // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004645 // phosphorylase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from direct assay /// 0008144 // drug binding // inferred from direct assay /// 0008184 // glycogen phosphorylase activity // inferred from direct assay /// 0008184 // glycogen phosphorylase activity // not recorded /// 0008184 // glycogen phosphorylase activity // traceable author statement /// 0008184 // glycogen phosphorylase activity // inferred from electronic annotation /// 0016208 // AMP binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from direct assay /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred by curator 1375477_at AA999104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA999104 /DB_XREF=gi:4294046 /DB_XREF=UI-R-C0-in-g-04-0-UI.s1 /CLONE=UI-R-C0-in-g-04-0-UI /FEA=EST /CNT=9 /TID=Rn.22351.1 /TIER=Stack /STK=8 /UG=Rn.22351 /UG_TITLE=ESTs AA999104 1375478_at AW253376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253376 /DB_XREF=gi:6596967 /DB_XREF=UI-R-BJ0-aen-b-11-0-UI.s1 /CLONE=UI-R-BJ0-aen-b-11-0-UI /FEA=EST /CNT=9 /TID=Rn.25043.1 /TIER=Stack /STK=8 /UG=Rn.25043 /UG_TITLE=ESTs AW253376 zinc finger protein 362 Zfp362 297879 NM_001191612 /// XM_001060148 /// XM_216345 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1375479_at AI555573 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555573 /DB_XREF=gi:4487936 /DB_XREF=UI-R-C2p-qs-a-05-0-UI.s1 /CLONE=UI-R-C2p-qs-a-05-0-UI /FEA=EST /CNT=9 /TID=Rn.22579.2 /TIER=Stack /STK=8 /UG=Rn.22579 /UG_TITLE=Rattus norvegicus scaffolding protein SLIPR (Slipr) mRNA, complete cds AI555573 Membrane associated guanylate kinase, WW and PDZ domain containing 3 Magi3 245903 NM_139084 0005634 // nucleus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1375480_at AI703713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI703713 /DB_XREF=gi:4991613 /DB_XREF=UI-R-AB1-yx-b-12-0-UI.s1 /CLONE=UI-R-AB1-yx-b-12-0-UI /FEA=EST /CNT=9 /TID=Rn.38357.1 /TIER=Stack /STK=8 /UG=Rn.38357 /UG_TITLE=ESTs, Moderately similar to MOZ_HUMAN MONOCYTIC LEUKEMIA ZINC FINGER PROTEIN (H.sapiens) AI703713 1375481_at BF415102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415102 /DB_XREF=gi:11403091 /DB_XREF=UI-R-BJ2-bou-g-03-0-UI.s1 /CLONE=UI-R-BJ2-bou-g-03-0-UI /FEA=EST /CNT=10 /TID=Rn.51807.1 /TIER=Stack /STK=8 /UG=Rn.51807 /UG_TITLE=ESTs, Highly similar to TRANSCRIPTIONAL ENHANCER FACTOR TEF-1 (M.musculus) BF415102 TEA domain family member 1 Tead1 361630 NM_001198589 /// XM_001069402 /// XM_001069451 /// XM_001078008 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007507 // heart development // not recorded /// 0035329 // hippo signaling cascade // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded 1375482_at BE113029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113029 /DB_XREF=gi:8505134 /DB_XREF=UI-R-BJ1-awf-e-11-0-UI.s1 /CLONE=UI-R-BJ1-awf-e-11-0-UI /FEA=EST /CNT=9 /TID=Rn.23500.1 /TIER=Stack /STK=8 /UG=Rn.23500 /UG_TITLE=ESTs, Weakly similar to MET_RAT HEPATOCYTE GROWTH FACTOR RECEPTOR PRECURSOR (MET PROTO-ONCOGENE TYROSINE KINASE) (C-MET) (HGF RECEPTOR) (HGF-SF RECEPTOR) (R.norvegicus) BE113029 similar to plexin 1 RGD1560871 362398 XM_001072622 /// XM_002729398 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1375483_at BE109255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109255 /DB_XREF=gi:8501360 /DB_XREF=UI-R-BS1-azd-f-11-0-UI.s1 /CLONE=UI-R-BS1-azd-f-11-0-UI /FEA=EST /CNT=9 /TID=Rn.23428.1 /TIER=Stack /STK=8 /UG=Rn.23428 /UG_TITLE=ESTs BE109255 similar to KIAA0240 RGD1305680 301235 NM_001106888 1375484_at BG376458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376458 /DB_XREF=gi:13300930 /DB_XREF=UI-R-CU0-but-g-04-0-UI.s1 /CLONE=UI-R-CU0-but-g-04-0-UI /FEA=EST /CNT=9 /TID=Rn.22083.1 /TIER=Stack /STK=8 /UG=Rn.22083 /UG_TITLE=ESTs BG376458 1375485_at AA957064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957064 /DB_XREF=gi:4239537 /DB_XREF=UI-R-E1-ge-c-03-0-UI.s1 /CLONE=UI-R-E1-ge-c-03-0-UI /FEA=EST /CNT=9 /TID=Rn.23146.1 /TIER=Stack /STK=8 /UG=Rn.23146 /UG_TITLE=ESTs AA957064 paired related homeobox 1 Prrx1 266813 NM_153821 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0042474 // middle ear morphogenesis // inferred from electronic annotation /// 0042474 // middle ear morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045880 // positive regulation of smoothened signaling pathway // inferred from electronic annotation /// 0045880 // positive regulation of smoothened signaling pathway // not recorded /// 0048701 // embryonic cranial skeleton morphogenesis // inferred from electronic annotation /// 0048701 // embryonic cranial skeleton morphogenesis // not recorded /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048844 // artery morphogenesis // inferred from electronic annotation /// 0048844 // artery morphogenesis // not recorded /// 0051216 // cartilage development // inferred from electronic annotation /// 0051216 // cartilage development // not recorded /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1375486_at BI296423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296423 /DB_XREF=gi:14960833 /DB_XREF=UI-R-CV2-cgr-a-07-0-UI.s1 /CLONE=UI-R-CV2-cgr-a-07-0-UI /FEA=EST /CNT=8 /TID=Rn.62257.1 /TIER=Stack /STK=8 /UG=Rn.62257 /UG_TITLE=ESTs BI296423 armadillo repeat containing, X-linked 5 /// similar to nuclear RNA export factor 2 LOC100361182 /// LOC680025 100361182 /// 680025 XM_001055368 /// XM_002727643 /// XM_002727645 /// XM_002730288 0005488 // binding // inferred from electronic annotation 1375487_at BI296529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296529 /DB_XREF=gi:14961042 /DB_XREF=UI-R-CV2-cgs-c-08-0-UI.s1 /CLONE=UI-R-CV2-cgs-c-08-0-UI /FEA=EST /CNT=8 /TID=Rn.66550.1 /TIER=Stack /STK=8 /UG=Rn.66550 /UG_TITLE=ESTs BI296529 1375488_at BI296702 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296702 /DB_XREF=gi:14961393 /DB_XREF=UI-R-CV2-cgv-c-11-0-UI.s1 /CLONE=UI-R-CV2-cgv-c-11-0-UI /FEA=EST /CNT=8 /TID=Rn.73232.1 /TIER=Stack /STK=8 /UG=Rn.73232 /UG_TITLE=ESTs BI296702 1375489_at BF405610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405610 /DB_XREF=gi:11393585 /DB_XREF=UI-R-CA1-bix-k-18-0-UI.s1 /CLONE=UI-R-CA1-bix-k-18-0-UI /FEA=EST /CNT=8 /TID=Rn.62902.1 /TIER=Stack /STK=8 /UG=Rn.62902 /UG_TITLE=ESTs BF405610 similar to hypothetical protein FLJ32871 RGD1565057 309300 XM_001079452 /// XM_219819 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 1375490_at AI236283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236283 /DB_XREF=gi:3829789 /DB_XREF=EST232845 /CLONE=ROVDD65 /FEA=EST /CNT=8 /TID=Rn.39281.1 /TIER=Stack /STK=8 /UG=Rn.39281 /UG_TITLE=ESTs AI236283 1375491_at BI299116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299116 /DB_XREF=gi:14975396 /DB_XREF=UI-R-CV2-chr-d-04-0-UI.s1 /CLONE=UI-R-CV2-chr-d-04-0-UI /FEA=EST /CNT=8 /TID=Rn.79902.1 /TIER=Stack /STK=8 /UG=Rn.79902 /UG_TITLE=ESTs BI299116 1375492_at BF409823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409823 /DB_XREF=gi:11397798 /DB_XREF=UI-R-CA1-bjr-c-01-0-UI.s1 /CLONE=UI-R-CA1-bjr-c-01-0-UI /FEA=EST /CNT=8 /TID=Rn.61493.1 /TIER=Stack /STK=8 /UG=Rn.61493 /UG_TITLE=ESTs BF409823 sulfatase 1 Sulf1 171396 NM_134378 0008152 // metabolic process // non-traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from mutant phenotype /// 0005783 // endoplasmic reticulum // non-traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from mutant phenotype /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // non-traceable author statement /// 0005795 // Golgi stack // inferred from electronic annotation /// 0009986 // cell surface // inferred from mutant phenotype /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0009986 // cell surface // non-traceable author statement /// 0009986 // cell surface // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004065 // arylsulfatase activity // not recorded /// 0004065 // arylsulfatase activity // inferred from sequence or structural similarity /// 0004065 // arylsulfatase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008484 // sulfuric ester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0018741 // alkyl sulfatase activity // non-traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 1375493_at BE104373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104373 /DB_XREF=gi:8496473 /DB_XREF=UI-R-BX0-aro-b-01-0-UI.s1 /CLONE=UI-R-BX0-aro-b-01-0-UI /FEA=EST /CNT=8 /TID=Rn.48383.1 /TIER=Stack /STK=8 /UG=Rn.48383 /UG_TITLE=ESTs BE104373 1375494_a_at BF413715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413715 /DB_XREF=gi:11401704 /DB_XREF=UI-R-CA0-boh-f-11-0-UI.s1 /CLONE=UI-R-CA0-boh-f-11-0-UI /FEA=EST /CNT=8 /TID=Rn.10263.2 /TIER=Stack /STK=8 /UG=Rn.10263 /LL=171297 /UG_GENE=Nlgn3 /UG_TITLE=neuroligin 3 BF413715 neuroligin 3 Nlgn3 171297 NM_134336 0002087 // regulation of respiratory gaseous exchange by neurological system process // inferred from electronic annotation /// 0002087 // regulation of respiratory gaseous exchange by neurological system process // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0008542 // visual learning // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0035176 // social behavior // inferred from electronic annotation /// 0035176 // social behavior // not recorded /// 0050804 // regulation of synaptic transmission // inferred from electronic annotation /// 0050804 // regulation of synaptic transmission // not recorded /// 0050808 // synapse organization // inferred from direct assay /// 0050808 // synapse organization // not recorded /// 0050808 // synapse organization // inferred from electronic annotation /// 0060080 // regulation of inhibitory postsynaptic membrane potential // inferred from electronic annotation /// 0060080 // regulation of inhibitory postsynaptic membrane potential // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375495_at BG376193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376193 /DB_XREF=gi:13300665 /DB_XREF=UI-R-CT0-bun-f-01-0-UI.s1 /CLONE=UI-R-CT0-bun-f-01-0-UI /FEA=EST /CNT=8 /TID=Rn.41732.1 /TIER=Stack /STK=8 /UG=Rn.41732 /UG_TITLE=ESTs BG376193 1375496_at BI299329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299329 /DB_XREF=gi:14975609 /DB_XREF=UI-R-CV2-cht-h-03-0-UI.s1 /CLONE=UI-R-CV2-cht-h-03-0-UI /FEA=EST /CNT=8 /TID=Rn.79903.1 /TIER=Stack /STK=8 /UG=Rn.79903 /UG_TITLE=ESTs BI299329 1375497_at BE107853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107853 /DB_XREF=gi:8499958 /DB_XREF=UI-R-CA0-awx-f-03-0-UI.s1 /CLONE=UI-R-CA0-awx-f-03-0-UI /FEA=EST /CNT=8 /TID=Rn.51318.1 /TIER=Stack /STK=8 /UG=Rn.51318 /UG_TITLE=ESTs BE107853 1375498_at BF387255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387255 /DB_XREF=gi:11372079 /DB_XREF=UI-R-CA1-bbl-d-04-0-UI.s1 /CLONE=UI-R-CA1-bbl-d-04-0-UI /FEA=EST /CNT=8 /TID=Rn.62811.1 /TIER=Stack /STK=8 /UG=Rn.62811 /UG_TITLE=ESTs BF387255 1375499_at BI299782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299782 /DB_XREF=gi:14976062 /DB_XREF=UI-R-CV2-chx-b-09-0-UI.s1 /CLONE=UI-R-CV2-chx-b-09-0-UI /FEA=EST /CNT=8 /TID=Rn.73070.1 /TIER=Stack /STK=8 /UG=Rn.73070 /UG_TITLE=ESTs BI299782 1375500_at AI600078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600078 /DB_XREF=gi:4609126 /DB_XREF=EST251781 /CLONE=REMDQ79 /FEA=EST /CNT=8 /TID=Rn.39092.1 /TIER=Stack /STK=8 /UG=Rn.39092 /UG_TITLE=ESTs, Highly similar to GLIC_MOUSE Gliacolin precursor (M.musculus) AI600078 1375501_at AI600001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600001 /DB_XREF=gi:4609049 /DB_XREF=EST251704 /CLONE=REMEK66 /FEA=EST /CNT=8 /TID=Rn.6982.1 /TIER=Stack /STK=8 /UG=Rn.6982 /UG_TITLE=ESTs AI600001 LOC361719 RGD1308106 361719 NM_001134575 1375502_at BE113152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113152 /DB_XREF=gi:8505257 /DB_XREF=UI-R-BJ1-awc-b-05-0-UI.s1 /CLONE=UI-R-BJ1-awc-b-05-0-UI /FEA=EST /CNT=8 /TID=Rn.23933.1 /TIER=Stack /STK=8 /UG=Rn.23933 /UG_TITLE=ESTs BE113152 Coiled-coil domain containing 112 Ccdc112 498858 NM_001109124 1375503_at AI411183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411183 /DB_XREF=gi:4254687 /DB_XREF=EST239477 /CLONE=RKIEP78 /FEA=EST /CNT=8 /TID=Rn.22311.1 /TIER=Stack /STK=8 /UG=Rn.22311 /UG_TITLE=ESTs, Weakly similar to VIMENTIN (R.norvegicus) AI411183 intermediate filament family orphan 1 Iffo1 362437 NM_001108647 1375504_at BM390747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390747 /DB_XREF=gi:18190805 /DB_XREF=UI-R-CN1-cjr-l-03-0-UI.s1 /CLONE=UI-R-CN1-cjr-l-03-0-UI /FEA=EST /CNT=8 /TID=Rn.25075.1 /TIER=Stack /STK=8 /UG=Rn.25075 /UG_TITLE=ESTs, Moderately similar to A Chain A, Crystal Structure Of The Accessory Subunit Of Murine Mitochondrial Polymerase Gamma (M.musculus) BM390747 polymerase (DNA directed), gamma 2, accessory subunit Polg2 303612 NM_001107060 0006412 // translation // inferred from electronic annotation /// 0006426 // glycyl-tRNA aminoacylation // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0042645 // mitochondrial nucleoid // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // not recorded /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004820 // glycine-tRNA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1375505_at BF414914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414914 /DB_XREF=gi:11402903 /DB_XREF=UI-R-BJ2-bot-e-06-0-UI.s1 /CLONE=UI-R-BJ2-bot-e-06-0-UI /FEA=EST /CNT=8 /TID=Rn.22247.1 /TIER=Stack /STK=8 /UG=Rn.22247 /UG_TITLE=ESTs, Moderately similar to I49523 Mouse primary response gene B94 mRNA, 3end - mouse (M.musculus) BF414914 Tumor necrosis factor, alpha-induced protein 2 Tnfaip2 299339 NM_001137633 1375506_at BG376675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376675 /DB_XREF=gi:13301147 /DB_XREF=UI-R-CU0-buq-e-12-0-UI.s1 /CLONE=UI-R-CU0-buq-e-12-0-UI /FEA=EST /CNT=8 /TID=Rn.41184.1 /TIER=Stack /STK=8 /UG=Rn.41184 /UG_TITLE=ESTs BG376675 aarF domain containing kinase 5 Adck5 362943 NM_001135798 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1375507_at BE109700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109700 /DB_XREF=gi:8501805 /DB_XREF=UI-R-BJ1-aup-b-05-0-UI.s1 /CLONE=UI-R-BJ1-aup-b-05-0-UI /FEA=EST /CNT=8 /TID=Rn.52425.1 /TIER=Stack /STK=8 /UG=Rn.52425 /UG_TITLE=ESTs BE109700 1375508_at BE095963 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095963 /DB_XREF=gi:8486894 /DB_XREF=UI-R-BU0-apd-g-02-0-UI.s1 /CLONE=UI-R-BU0-apd-g-02-0-UI /FEA=EST /CNT=8 /TID=Rn.39300.1 /TIER=Stack /STK=8 /UG=Rn.39300 /UG_TITLE=ESTs, Highly similar to KINESIN-LIKE PROTEIN KIF2 (M.musculus) BE095963 1375509_at BF388209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388209 /DB_XREF=gi:11373033 /DB_XREF=UI-R-CA1-bca-e-11-0-UI.s1 /CLONE=UI-R-CA1-bca-e-11-0-UI /FEA=EST /CNT=8 /TID=Rn.63494.1 /TIER=Stack /STK=8 /UG=Rn.63494 /UG_TITLE=ESTs BF388209 1375510_x_at BF419823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419823 /DB_XREF=gi:11407812 /DB_XREF=UI-R-CA0-bpg-f-08-0-UI.s1 /CLONE=UI-R-CA0-bpg-f-08-0-UI /FEA=EST /CNT=8 /TID=Rn.63655.1 /TIER=Stack /STK=8 /UG=Rn.63655 /UG_TITLE=ESTs, Weakly similar to A27307 proline-rich phosphoprotein (H.sapiens) BF419823 1375511_at BE118264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118264 /DB_XREF=gi:8510369 /DB_XREF=UI-R-BJ1-azo-f-05-0-UI.s1 /CLONE=UI-R-BJ1-azo-f-05-0-UI /FEA=EST /CNT=8 /TID=Rn.10667.2 /TIER=Stack /STK=8 /UG=Rn.10667 /LL=81735 /UG_GENE=Neo1 /UG_TITLE=neogenin BE118264 Neogenin homolog 1 (chicken) Neo1 81735 NM_001191881 /// XM_001074913 /// XM_343402 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007520 // myoblast fusion // not recorded /// 0045449 // regulation of transcription // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // not recorded /// 0045296 // cadherin binding // not recorded 1375512_at BE110889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110889 /DB_XREF=gi:8502994 /DB_XREF=UI-R-BJ1-aux-b-07-0-UI.s1 /CLONE=UI-R-BJ1-aux-b-07-0-UI /FEA=EST /CNT=8 /TID=Rn.31803.2 /TIER=Stack /STK=8 /UG=Rn.31803 /LL=81918 /UG_GENE=Par3 /UG_TITLE=three-PDZ containing protein similar to C. elegans PAR3 (partitioning defect) BE110889 Par-3 (partitioning defective 3) homolog (C. elegans) Pard3 81918 NM_031235 0006612 // protein targeting to membrane // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0045197 // establishment or maintenance of epithelial cell apical/basal polarity // non-traceable author statement /// 0051301 // cell division // inferred from electronic annotation /// 0070830 // tight junction assembly // inferred from mutant phenotype /// 0090162 // establishment of epithelial cell polarity // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005819 // spindle // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from direct assay /// 0005912 // adherens junction // not recorded /// 0005913 // cell-cell adherens junction // not recorded /// 0005923 // tight junction // not recorded /// 0005923 // tight junction // inferred from sequence or structural similarity /// 0005923 // tight junction // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0005080 // protein kinase C binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from direct assay /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from direct assay /// 0008289 // lipid binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0032266 // phosphatidylinositol-3-phosphate binding // inferred from direct assay 1375513_at BG376846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376846 /DB_XREF=gi:13301318 /DB_XREF=UI-R-CA1-blh-h-08-0-UI.s1 /CLONE=UI-R-CA1-blh-h-08-0-UI /FEA=EST /CNT=8 /TID=Rn.62937.1 /TIER=Stack /STK=8 /UG=Rn.62937 /UG_TITLE=ESTs BG376846 1375514_at BF402430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402430 /DB_XREF=gi:11390405 /DB_XREF=UI-R-CA0-bhp-b-07-0-UI.s1 /CLONE=UI-R-CA0-bhp-b-07-0-UI /FEA=EST /CNT=8 /TID=Rn.64386.1 /TIER=Stack /STK=8 /UG=Rn.64386 /UG_TITLE=ESTs BF402430 Solute carrier family 30 (zinc transporter), member 9 Slc30a9 498358 NM_001109088 0006812 // cation transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005856 // cytoskeleton // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0008324 // cation transmembrane transporter activity // inferred from electronic annotation 1375515_at BF396077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396077 /DB_XREF=gi:11381049 /DB_XREF=UI-R-CA1-bcb-a-11-0-UI.s1 /CLONE=UI-R-CA1-bcb-a-11-0-UI /FEA=EST /CNT=8 /TID=Rn.63288.1 /TIER=Stack /STK=8 /UG=Rn.63288 /UG_TITLE=ESTs BF396077 1375516_at AA891171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891171 /DB_XREF=gi:3018050 /DB_XREF=EST194974 /CLONE=RHEAQ10 /FEA=EST /CNT=43 /TID=Rn.3009.1 /TIER=Stack /STK=7 /UG=Rn.3009 /UG_TITLE=ESTs, Moderately similar to N4BM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B14.5B (H.sapiens) AA891171 NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2 Ndufc2 293130 NM_001009290 0006120 // mitochondrial electron transport, NADH to ubiquinone // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005747 // mitochondrial respiratory chain complex I // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from electronic annotation 1375517_at AI171654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171654 /DB_XREF=gi:3711694 /DB_XREF=EST217627 /CLONE=RMUBN88 /FEA=EST /CNT=43 /TID=Rn.3461.1 /TIER=Stack /STK=7 /UG=Rn.3461 /UG_TITLE=ESTs AI171654 tumor protein p53 inducible nuclear protein 2 Tp53inp2 362246 XM_001063973 /// XM_001074013 0005634 // nucleus // inferred from electronic annotation 1375518_at AI104533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104533 /DB_XREF=gi:3708874 /DB_XREF=EST213822 /CLONE=RHECE72 /FEA=EST /CNT=32 /TID=Rn.4008.1 /TIER=Stack /STK=7 /UG=Rn.4008 /UG_TITLE=ESTs, Moderately similar to S63665 titin protein (H.sapiens) AI104533 1375519_at AI237401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237401 /DB_XREF=gi:3830907 /DB_XREF=EST233963 /CLONE=RPLCY59 /FEA=EST /CNT=29 /TID=Rn.11229.3 /TIER=Stack /STK=7 /UG=Rn.11229 /LL=25632 /UG_GENE=Hba1 /UG_TITLE=Hemoglobin, alpha 1 AI237401 globin, alpha LOC287167 287167 NM_001013853 0006810 // transport // inferred from electronic annotation /// 0015671 // oxygen transport // inferred from electronic annotation 0005833 // hemoglobin complex // inferred from electronic annotation 0005344 // oxygen transporter activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0019825 // oxygen binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375520_at AI007763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI007763 /DB_XREF=gi:3221595 /DB_XREF=EST202214 /CLONE=RBRAU33 /FEA=EST /CNT=27 /TID=Rn.3244.1 /TIER=Stack /STK=7 /UG=Rn.3244 /UG_TITLE=ESTs AI007763 coatomer protein complex, subunit zeta 1 Copz1 315345 NM_001108117 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // not recorded /// 0006891 // intra-Golgi vesicle-mediated transport // not recorded /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0048205 // COPI coating of Golgi vesicle // not recorded 0005829 // cytosol // not recorded /// 0030117 // membrane coat // inferred from electronic annotation /// 0030126 // COPI vesicle coat // not recorded 0005515 // protein binding // inferred from electronic annotation 1375521_at AI230334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230334 /DB_XREF=gi:3814221 /DB_XREF=EST227029 /CLONE=REMCV22 /FEA=EST /CNT=31 /TID=Rn.3795.1 /TIER=Stack /STK=7 /UG=Rn.3795 /UG_TITLE=ESTs, Moderately similar to 1004299C T cell antigen receptor (H.sapiens) AI230334 transcription elongation factor A (SII)-like 8 Tceal8 367909 NM_001014275 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1375522_at AI010491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010491 /DB_XREF=gi:3224323 /DB_XREF=EST204942 /CLONE=RMUAN11 /FEA=EST /CNT=26 /TID=Rn.830.1 /TIER=Stack /STK=7 /UG=Rn.830 /UG_TITLE=ESTs, Highly similar to NMT1 MOUSE GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE 1 (M.musculus) AI010491 N-myristoyltransferase 1 Nmt1 259274 NM_148891 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006499 // N-terminal protein myristoylation // inferred from electronic annotation /// 0006499 // N-terminal protein myristoylation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004379 // glycylpeptide N-tetradecanoyltransferase activity // inferred from electronic annotation /// 0004379 // glycylpeptide N-tetradecanoyltransferase activity // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019107 // myristoyltransferase activity // inferred from direct assay /// 0019107 // myristoyltransferase activity // not recorded 1375523_at BE108178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108178 /DB_XREF=gi:8500323 /DB_XREF=UI-R-BS1-ayw-g-07-0-UI.s1 /CLONE=UI-R-BS1-ayw-g-07-0-UI /FEA=EST /CNT=27 /TID=Rn.7117.1 /TIER=Stack /STK=7 /UG=Rn.7117 /UG_TITLE=ESTs BE108178 Myristoylated alanine rich protein kinase C substrate Marcks 25603 XM_002728965 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0042585 // germinal vesicle // inferred from electronic annotation /// 0042585 // germinal vesicle // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005080 // protein kinase C binding // inferred from electronic annotation /// 0005080 // protein kinase C binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation 1375524_at AA956714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956714 /DB_XREF=gi:4239188 /DB_XREF=UI-R-E1-fm-h-10-0-UI.s1 /CLONE=UI-R-E1-fm-h-10-0-UI /FEA=EST /CNT=24 /TID=Rn.54749.4 /TIER=Stack /STK=7 /UG=Rn.54749 /LL=64158 /UG_GENE=Tuba1 /UG_TITLE=alpha-tubulin AA956714 AT rich interactive domain 1A (SWI-like) Arid1a 297867 NM_001106635 0006325 // chromatin organization // not recorded /// 0030520 // estrogen receptor signaling pathway // not recorded /// 0030521 // androgen receptor signaling pathway // not recorded /// 0042921 // glucocorticoid receptor signaling pathway // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0016514 // SWI/SNF complex // not recorded /// 0071564 // npBAF complex // not recorded /// 0071565 // nBAF complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded 1375525_at BI294783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294783 /DB_XREF=gi:14957574 /DB_XREF=UI-R-DK0-cec-b-01-0-UI.s1 /CLONE=UI-R-DK0-cec-b-01-0-UI /FEA=EST /CNT=20 /TID=Rn.6914.1 /TIER=Stack /STK=7 /UG=Rn.6914 /UG_TITLE=ESTs BI294783 microtubule-associated protein, RP/EB family, member 1 Mapre1 114764 NM_138509 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0031115 // negative regulation of microtubule polymerization // not recorded /// 0035372 // protein localization to microtubule // not recorded /// 0035372 // protein localization to microtubule // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // not recorded /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005874 // microtubule // not recorded /// 0005881 // cytoplasmic microtubule // not recorded /// 0030981 // cortical microtubule cytoskeleton // not recorded /// 0031253 // cell projection membrane // not recorded /// 0042995 // cell projection // not recorded 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // inferred from electronic annotation /// 0051010 // microtubule plus-end binding // inferred from direct assay /// 0051010 // microtubule plus-end binding // not recorded 1375526_at AI171327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171327 /DB_XREF=gi:3711367 /DB_XREF=EST217282 /CLONE=RMUBJ17 /FEA=EST /CNT=17 /TID=Rn.6218.1 /TIER=Stack /STK=7 /UG=Rn.6218 /UG_TITLE=ESTs AI171327 similar to novel protein of unknown function (DUF423) family member RGD1563438 287442 NM_001170549 /// XM_001079603 /// XM_213333 0005743 // mitochondrial inner membrane // not recorded 1375527_at BF282681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282681 /DB_XREF=gi:11213751 /DB_XREF=EST447272 /CLONE=RGIDR62 /FEA=EST /CNT=18 /TID=Rn.22476.1 /TIER=Stack /STK=7 /UG=Rn.22476 /UG_TITLE=ESTs BF282681 chromodomain helicase DNA binding protein 8 Chd8 65027 NM_022933 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from direct assay /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // not recorded /// 0043044 // ATP-dependent chromatin remodeling // inferred from sequence or structural similarity /// 0043044 // ATP-dependent chromatin remodeling // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045945 // positive regulation of transcription from RNA polymerase III promoter // not recorded /// 0045945 // positive regulation of transcription from RNA polymerase III promoter // inferred from sequence or structural similarity /// 0045945 // positive regulation of transcription from RNA polymerase III promoter // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // inferred from direct assay /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from electronic annotation /// 0071339 // MLL1 complex // not recorded /// 0071339 // MLL1 complex // inferred from sequence or structural similarity /// 0071339 // MLL1 complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0002039 // p53 binding // not recorded /// 0002039 // p53 binding // inferred from sequence or structural similarity /// 0002039 // p53 binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003678 // DNA helicase activity // not recorded /// 0003678 // DNA helicase activity // inferred from sequence or structural similarity /// 0003678 // DNA helicase activity // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from direct assay /// 0008013 // beta-catenin binding // not recorded /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0008094 // DNA-dependent ATPase activity // inferred from sequence or structural similarity /// 0008094 // DNA-dependent ATPase activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from direct assay /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0035064 // methylated histone residue binding // not recorded /// 0035064 // methylated histone residue binding // inferred from sequence or structural similarity /// 0035064 // methylated histone residue binding // inferred from electronic annotation /// 0042393 // histone binding // not recorded /// 0042393 // histone binding // inferred from sequence or structural similarity /// 0042393 // histone binding // inferred from electronic annotation /// 0070016 // armadillo repeat domain binding // inferred from physical interaction 1375528_at AI177164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177164 /DB_XREF=gi:3727802 /DB_XREF=EST220771 /CLONE=ROVCB63 /FEA=EST /CNT=15 /TID=Rn.23073.1 /TIER=Stack /STK=7 /UG=Rn.23073 /UG_TITLE=ESTs, Moderately similar to JC7284 phospholipase A2 (H.sapiens) AI177164 Patatin-like phospholipase domain containing 8 Pnpla8 314075 NM_001108020 0006631 // fatty acid metabolic process // not recorded 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // not recorded /// 0005778 // peroxisomal membrane // not recorded 0047499 // calcium-independent phospholipase A2 activity // not recorded 1375529_at BF404908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404908 /DB_XREF=gi:11392883 /DB_XREF=UI-R-CA1-bij-b-05-0-UI.s1 /CLONE=UI-R-CA1-bij-b-05-0-UI /FEA=EST /CNT=15 /TID=Rn.3599.1 /TIER=Stack /STK=7 /UG=Rn.3599 /UG_TITLE=ESTs, Weakly similar to HCD2 RAT 3-HYDROXYACYL-COA DEHYDROGENASE TYPE II (R.norvegicus) BF404908 carbonyl reductase 4 Cbr4 359725 NM_182672 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0051289 // protein homotetramerization // inferred from electronic annotation /// 0051289 // protein homotetramerization // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // not recorded /// 0005759 // mitochondrial matrix // inferred from sequence or structural similarity /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008753 // NADPH dehydrogenase (quinone) activity // not recorded /// 0008753 // NADPH dehydrogenase (quinone) activity // inferred from sequence or structural similarity /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0048038 // quinone binding // not recorded /// 0048038 // quinone binding // inferred from sequence or structural similarity /// 0070402 // NADPH binding // not recorded /// 0070402 // NADPH binding // inferred from sequence or structural similarity 1375530_at BG374612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374612 /DB_XREF=gi:13299049 /DB_XREF=UI-R-CV1-bta-a-05-0-UI.s1 /CLONE=UI-R-CV1-bta-a-05-0-UI /FEA=EST /CNT=18 /TID=Rn.14702.1 /TIER=Stack /STK=7 /UG=Rn.14702 /UG_TITLE=ESTs BG374612 glucosamine-phosphate N-acetyltransferase 1 Gnpnat1 498486 NM_001134756 /// NM_001134757 0001889 // liver development // inferred from expression pattern /// 0006041 // glucosamine metabolic process // inferred from direct assay /// 0006044 // N-acetylglucosamine metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005770 // late endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005793 // ER-Golgi intermediate compartment // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0004343 // glucosamine 6-phosphate N-acetyltransferase activity // inferred from direct assay /// 0004343 // glucosamine 6-phosphate N-acetyltransferase activity // not recorded /// 0004343 // glucosamine 6-phosphate N-acetyltransferase activity // inferred from electronic annotation /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0048029 // monosaccharide binding // inferred from direct assay 1375531_at BI300956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300956 /DB_XREF=gi:14977236 /DB_XREF=UI-R-CV2-cil-h-07-0-UI.s1 /CLONE=UI-R-CV2-cil-h-07-0-UI /FEA=EST /CNT=15 /TID=Rn.25344.1 /TIER=Stack /STK=7 /UG=Rn.25344 /UG_TITLE=ESTs BI300956 leucine-rich repeats and immunoglobulin-like domains 3 Lrig3 299830 XM_001055013 /// XM_216905 0005515 // protein binding // inferred from electronic annotation 1375532_at AI008792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008792 /DB_XREF=gi:3222624 /DB_XREF=EST203243 /CLONE=REMBD31 /FEA=EST /CNT=13 /TID=Rn.3272.2 /TIER=Stack /STK=7 /UG=Rn.3272 /LL=25587 /UG_GENE=Id2 /UG_TITLE=Inhibitor of DNA binding 2, dominant negative helix-loop-helix protein AI008792 1375533_at BI289645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289645 /DB_XREF=gi:14947426 /DB_XREF=UI-R-DK0-cfi-d-10-0-UI.s1 /CLONE=UI-R-DK0-cfi-d-10-0-UI /FEA=EST /CNT=13 /TID=Rn.23131.1 /TIER=Stack /STK=7 /UG=Rn.23131 /UG_TITLE=ESTs, Moderately similar to Y121_HUMAN HYPOTHETICAL PROTEIN KIAA0121 (H.sapiens) BI289645 vestigial like 4 (Drosophila) Vgll4 297523 NM_001015004 1375534_at BE118698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118698 /DB_XREF=gi:8510803 /DB_XREF=UI-R-BS1-azr-f-12-0-UI.s1 /CLONE=UI-R-BS1-azr-f-12-0-UI /FEA=EST /CNT=13 /TID=Rn.17202.1 /TIER=Stack /STK=7 /UG=Rn.17202 /UG_TITLE=ESTs, Moderately similar to pumilio; pumuckel; ovarette; bemused (Drosophila melanogaster) (D.melanogaster) BE118698 pumilio homolog 2 (Drosophila) Pum2 298874 NM_001106715 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375535_at AI103917 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103917 /DB_XREF=gi:3704869 /DB_XREF=EST213206 /CLONE=RHEBV13 /FEA=EST /CNT=12 /TID=Rn.6069.1 /TIER=Stack /STK=7 /UG=Rn.6069 /UG_TITLE=ESTs AI103917 1375536_at BI287975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287975 /DB_XREF=gi:14944105 /DB_XREF=UI-R-CX0s-ccw-e-07-0-UI.s1 /CLONE=UI-R-CX0s-ccw-e-07-0-UI /FEA=EST /CNT=12 /TID=Rn.24380.1 /TIER=Stack /STK=7 /UG=Rn.24380 /UG_TITLE=ESTs BI287975 numb homolog (Drosophila) Numb 29419 NM_133287 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007405 // neuroblast proliferation // not recorded /// 0007405 // neuroblast proliferation // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0008283 // cell proliferation // non-traceable author statement /// 0021670 // lateral ventricle development // not recorded /// 0021670 // lateral ventricle development // inferred from electronic annotation /// 0021849 // neuroblast division in subventricular zone // not recorded /// 0021849 // neuroblast division in subventricular zone // inferred from electronic annotation /// 0030154 // cell differentiation // non-traceable author statement /// 0030900 // forebrain development // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0034332 // adherens junction organization // not recorded /// 0034332 // adherens junction organization // inferred from electronic annotation /// 0045664 // regulation of neuron differentiation // inferred from mutant phenotype /// 0050769 // positive regulation of neurogenesis // not recorded /// 0050769 // positive regulation of neurogenesis // inferred from electronic annotation /// 0050775 // positive regulation of dendrite morphogenesis // inferred from mutant phenotype 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0019897 // extrinsic to plasma membrane // not recorded /// 0019897 // extrinsic to plasma membrane // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from direct assay /// 0045177 // apical part of cell // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0045294 // alpha-catenin binding // not recorded /// 0045294 // alpha-catenin binding // inferred from electronic annotation /// 0045296 // cadherin binding // not recorded /// 0045296 // cadherin binding // inferred from electronic annotation 1375537_at BE107226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107226 /DB_XREF=gi:8499331 /DB_XREF=UI-R-BS1-ayr-d-03-0-UI.s1 /CLONE=UI-R-BS1-ayr-d-03-0-UI /FEA=EST /CNT=22 /TID=Rn.8394.1 /TIER=Stack /STK=7 /UG=Rn.8394 /UG_TITLE=ESTs, Moderately similar to STRI RAT STRIATIN (R.norvegicus) BE107226 striatin, calmodulin binding protein 3 Strn3 114520 NM_001029897 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0016481 // negative regulation of transcription // inferred from mutant phenotype /// 0032355 // response to estradiol stimulus // inferred from direct assay /// 0033147 // negative regulation of estrogen receptor signaling pathway // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation /// 0000159 // protein phosphatase type 2A complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0032403 // protein complex binding // inferred from direct assay /// 0032403 // protein complex binding // not recorded /// 0032403 // protein complex binding // inferred from electronic annotation /// 0051721 // protein phosphatase 2A binding // inferred from electronic annotation /// 0051721 // protein phosphatase 2A binding // not recorded /// 0070016 // armadillo repeat domain binding // inferred from electronic annotation /// 0070016 // armadillo repeat domain binding // not recorded 1375538_at AI230737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230737 /DB_XREF=gi:3814624 /DB_XREF=EST227432 /CLONE=REMDA62 /FEA=EST /CNT=14 /TID=Rn.13776.2 /TIER=Stack /STK=7 /UG=Rn.13776 /UG_TITLE=ESTs AI230737 1375539_at BF411127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411127 /DB_XREF=gi:11399102 /DB_XREF=UI-R-BT1-bmm-c-01-0-UI.s1 /CLONE=UI-R-BT1-bmm-c-01-0-UI /FEA=EST /CNT=11 /TID=Rn.8247.1 /TIER=Stack /STK=7 /UG=Rn.8247 /UG_TITLE=ESTs, Highly similar to TBR1 MOUSE T-BRAIN-1 PROTEIN (M.musculus) BF411127 T-box, brain, 1-like /// T-box, brain, 1 LOC100365364 /// Tbr1 100365364 /// 680427 NM_001191070 /// XM_001056898 /// XM_002726227 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0030902 // hindbrain development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded 1375540_at BF400209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400209 /DB_XREF=gi:11385220 /DB_XREF=UI-R-CA1-bjc-o-16-0-UI.s1 /CLONE=UI-R-CA1-bjc-o-16-0-UI /FEA=EST /CNT=13 /TID=Rn.39094.1 /TIER=Stack /STK=7 /UG=Rn.39094 /UG_TITLE=ESTs BF400209 CDKN2A interacting protein N-terminal like Cdkn2aipnl 287278 NM_001008278 1375541_at AA900525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900525 /DB_XREF=gi:4233017 /DB_XREF=UI-R-E0-dl-d-05-0-UI.s1 /CLONE=UI-R-E0-dl-d-05-0-UI /FEA=EST /CNT=11 /TID=Rn.22939.1 /TIER=Stack /STK=7 /UG=Rn.22939 /UG_TITLE=ESTs AA900525 Retinoblastoma binding protein 6 Rbbp6 308968 XM_001073098 /// XM_001076339 /// XM_001076360 /// XM_219296 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1375542_at AI407092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407092 /DB_XREF=gi:4250596 /DB_XREF=EST235380 /CLONE=ROVDT26 /FEA=EST /CNT=10 /TID=Rn.7684.2 /TIER=Stack /STK=7 /UG=Rn.7684 /UG_TITLE=ESTs AI407092 Radixin Rdx 315655 NM_001005889 0030033 // microvillus assembly // not recorded /// 0045176 // apical protein localization // inferred from mutant phenotype /// 0045176 // apical protein localization // not recorded /// 0051016 // barbed-end actin filament capping // inferred from direct assay /// 0070848 // response to growth factor stimulus // inferred from expression pattern 0001726 // ruffle // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005902 // microvillus // inferred from direct assay /// 0005902 // microvillus // not recorded /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0019898 // extrinsic to membrane // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030175 // filopodium // not recorded /// 0030496 // midbody // inferred from direct assay /// 0032154 // cleavage furrow // inferred from direct assay /// 0032420 // stereocilium // not recorded /// 0045177 // apical part of cell // not recorded 0003779 // actin binding // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 1375543_at AI060204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060204 /DB_XREF=gi:3333981 /DB_XREF=UI-R-C1-lm-b-04-0-UI.s1 /CLONE=UI-R-C1-lm-b-04-0-UI /FEA=EST /CNT=10 /TID=Rn.19498.1 /TIER=Stack /STK=7 /UG=Rn.19498 /UG_TITLE=ESTs, Weakly similar to goliath (Drosophila melanogaster) (D.melanogaster) AI060204 Ring finger protein 149 Rnf149 363222 XM_001058362 /// XM_343561 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375544_at AI172543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172543 /DB_XREF=gi:3712583 /DB_XREF=UI-R-C2p-nz-a-06-0-UI.s1 /CLONE=UI-R-C2p-nz-a-06-0-UI /FEA=EST /CNT=10 /TID=Rn.22164.1 /TIER=Stack /STK=7 /UG=Rn.22164 /UG_TITLE=ESTs, Weakly similar to T13924 sdk protein - fruit fly (D.melanogaster) AI172543 1375545_at BE111095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111095 /DB_XREF=gi:8503200 /DB_XREF=UI-R-BJ1-auz-e-12-0-UI.s1 /CLONE=UI-R-BJ1-auz-e-12-0-UI /FEA=EST /CNT=10 /TID=Rn.32231.1 /TIER=Stack /STK=7 /UG=Rn.32231 /UG_TITLE=ESTs, Weakly similar to ataxin 2 binding protein 1; ataxin 2-binding protein 1 (Mus musculus) (M.musculus) BE111095 RNA binding motif protein 9 Rbm9 362950 NM_001079895 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0030520 // estrogen receptor signaling pathway // inferred from sequence or structural similarity /// 0030520 // estrogen receptor signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from sequence or structural similarity /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from sequence or structural similarity /// 0008134 // transcription factor binding // inferred from electronic annotation 1375546_at AI009616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009616 /DB_XREF=gi:4133077 /DB_XREF=EST204067 /CLONE=RLUBG38 /FEA=EST /CNT=10 /TID=Rn.12924.1 /TIER=Stack /STK=7 /UG=Rn.12924 /UG_TITLE=ESTs AI009616 fizzy/cell division cycle 20 related 1 (Drosophila) Fzr1 314642 NM_001108074 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0031572 // G2/M transition DNA damage checkpoint // not recorded /// 0040020 // regulation of meiosis // not recorded /// 0040020 // regulation of meiosis // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070306 // lens fiber cell differentiation // not recorded /// 0070306 // lens fiber cell differentiation // inferred from electronic annotation 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1375547_at AI113190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113190 /DB_XREF=gi:3513139 /DB_XREF=UI-R-C2p-np-e-11-0-UI.s1 /CLONE=UI-R-C2p-np-e-11-0-UI /FEA=EST /CNT=10 /TID=Rn.22190.1 /TIER=Stack /STK=7 /UG=Rn.22190 /UG_TITLE=ESTs AI113190 THAP domain containing 11 Thap11 307806 NM_001107422 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1375548_at BI296537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296537 /DB_XREF=gi:14961058 /DB_XREF=UI-R-CV2-cgs-d-04-0-UI.s1 /CLONE=UI-R-CV2-cgs-d-04-0-UI /FEA=EST /CNT=10 /TID=Rn.23067.1 /TIER=Stack /STK=7 /UG=Rn.23067 /UG_TITLE=ESTs BI296537 similar to RIKEN cDNA 4732418C07 RGD1310351 298425 NM_001106677 1375549_at AI407719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407719 /DB_XREF=gi:4251223 /DB_XREF=EST236009 /CLONE=ROVDS33 /FEA=EST /CNT=12 /TID=Rn.20359.1 /TIER=Stack /STK=7 /UG=Rn.20359 /UG_TITLE=ESTs AI407719 1375550_at BI280304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280304 /DB_XREF=gi:14928954 /DB_XREF=UI-R-DE0-cag-d-04-0-UI.s1 /CLONE=UI-R-DE0-cag-d-04-0-UI /FEA=EST /CNT=10 /TID=Rn.16320.1 /TIER=Stack /STK=7 /UG=Rn.16320 /UG_TITLE=ESTs, Highly similar to BAG1 MOUSE BCL-2 BINDING ATHANOGENE-1 (M.musculus) BI280304 BCL2-associated athanogene Bag1 297994 NM_001106647 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006950 // response to stress // inferred from expression pattern /// 0010226 // response to lithium ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0035094 // response to nicotine // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0070389 // chaperone cofactor-dependent protein refolding // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0045111 // intermediate filament cytoskeleton // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375551_at BG379782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379782 /DB_XREF=gi:13304259 /DB_XREF=UI-R-CS0-btn-c-01-0-UI.s1 /CLONE=UI-R-CS0-btn-c-01-0-UI /FEA=EST /CNT=10 /TID=Rn.9425.1 /TIER=Stack /STK=7 /UG=Rn.9425 /UG_TITLE=ESTs, Weakly similar to Y40B1B.7.p (Caenorhabditis elegans) (C.elegans) BG379782 coiled-coil domain containing 86 Ccdc86 293738 NM_001006974 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 1375552_at BG372976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372976 /DB_XREF=gi:13269513 /DB_XREF=UI-R-CV1-bsb-b-02-0-UI.s1 /CLONE=UI-R-CV1-bsb-b-02-0-UI /FEA=EST /CNT=9 /TID=Rn.36055.1 /TIER=Stack /STK=7 /UG=Rn.36055 /UG_TITLE=ESTs, Highly similar to signal recognition particle 72kD (Homo sapiens) (H.sapiens) BG372976 signal recognition particle 72 Srp72 498351 NM_001170601 /// XM_001066751 /// XM_001074215 0006614 // SRP-dependent cotranslational protein targeting to membrane // inferred from electronic annotation /// 0042493 // response to drug // not recorded 0005786 // signal recognition particle, endoplasmic reticulum targeting // not recorded /// 0048500 // signal recognition particle // inferred from electronic annotation 0005047 // signal recognition particle binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0008312 // 7S RNA binding // inferred from electronic annotation 1375553_at BE096042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096042 /DB_XREF=gi:8486968 /DB_XREF=UI-R-BU0-apk-f-05-0-UI.s1 /CLONE=UI-R-BU0-apk-f-05-0-UI /FEA=EST /CNT=9 /TID=Rn.22082.1 /TIER=Stack /STK=7 /UG=Rn.22082 /UG_TITLE=ESTs BE096042 similar to RIKEN cDNA 5133400G04 RGD1311742 291676 NM_001025636 0006350 // transcription // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1375554_at BM390927 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390927 /DB_XREF=gi:18190980 /DB_XREF=UI-R-CN1-cjp-o-01-0-UI.s1 /CLONE=UI-R-CN1-cjp-o-01-0-UI /FEA=EST /CNT=9 /TID=Rn.32388.1 /TIER=Stack /STK=7 /UG=Rn.32388 /UG_TITLE=ESTs BM390927 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 Ddx47 297685 NM_001015005 0005730 // nucleolus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1375555_at AW251423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251423 /DB_XREF=gi:6595014 /DB_XREF=UI-R-BJ0-adm-a-08-0-UI.s1 /CLONE=UI-R-BJ0-adm-a-08-0-UI /FEA=EST /CNT=9 /TID=Rn.15878.1 /TIER=Stack /STK=7 /UG=Rn.15878 /UG_TITLE=ESTs AW251423 1375556_at AI602844 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602844 /DB_XREF=gi:4612005 /DB_XREF=UI-R-AE0-xm-d-04-0-UI.s1 /CLONE=UI-R-AE0-xm-d-04-0-UI /FEA=EST /CNT=9 /TID=Rn.38282.1 /TIER=Stack /STK=7 /UG=Rn.38282 /UG_TITLE=ESTs, Highly similar to TBX2 MOUSE TBX2 PROTEIN (M.musculus) AI602844 T-box 2 Tbx2 303398 NM_001107033 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007521 // muscle cell fate determination // not recorded /// 0007569 // cell aging // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0048738 // cardiac muscle tissue development // not recorded /// 0060596 // mammary placode formation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // not recorded 1375557_at AA859353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859353 /DB_XREF=gi:4229701 /DB_XREF=UI-R-E0-cl-c-04-0-UI.s1 /CLONE=UI-R-E0-cl-c-04-0-UI /FEA=EST /CNT=9 /TID=Rn.7202.1 /TIER=Stack /STK=7 /UG=Rn.7202 /UG_TITLE=ESTs, Weakly similar to Arix1 (R.norvegicus) AA859353 orthopedia homeobox Otp 294640 NM_001100523 /// XM_001059943 /// XM_215445 0002052 // positive regulation of neuroblast proliferation // inferred from electronic annotation /// 0002052 // positive regulation of neuroblast proliferation // not recorded /// 0021879 // forebrain neuron differentiation // inferred from electronic annotation /// 0021879 // forebrain neuron differentiation // not recorded /// 0021979 // hypothalamus cell differentiation // inferred from electronic annotation /// 0021979 // hypothalamus cell differentiation // not recorded /// 0021985 // neurohypophysis development // inferred from electronic annotation /// 0021985 // neurohypophysis development // not recorded 0003677 // DNA binding // inferred from electronic annotation 1375558_at BM387339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387339 /DB_XREF=gi:18187392 /DB_XREF=UI-R-CN1-cjj-c-03-0-UI.s1 /CLONE=UI-R-CN1-cjj-c-03-0-UI /FEA=EST /CNT=9 /TID=Rn.22151.1 /TIER=Stack /STK=7 /UG=Rn.22151 /UG_TITLE=ESTs, Weakly similar to COLLAGEN ALPHA 1(III) CHAIN (R.norvegicus) BM387339 RAB34, member RAS oncogene family Rab34 360571 NM_001012140 0006184 // GTP catabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0006897 // endocytosis // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0001726 // ruffle // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // not recorded 1375559_at BI283479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283479 /DB_XREF=gi:14935262 /DB_XREF=UI-R-DE0-cab-g-09-0-UI.s1 /CLONE=UI-R-DE0-cab-g-09-0-UI /FEA=EST /CNT=9 /TID=Rn.40945.1 /TIER=Stack /STK=7 /UG=Rn.40945 /UG_TITLE=ESTs, Weakly similar to LHX5 MOUSE LIMHOMEOBOX PROTEIN LHX5 (R.norvegicus) BI283479 similar to thyroid receptor-interacting protein 6 LOC686323 686323 NM_001127570 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375560_at AA945579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945579 /DB_XREF=gi:4132553 /DB_XREF=EST201078 /CLONE=RLIAP24 /FEA=EST /CNT=9 /TID=Rn.7421.1 /TIER=Stack /STK=7 /UG=Rn.7421 /UG_TITLE=ESTs, Weakly similar to D64752 dihydrodipicolinate synthase homolog yagE - Escherichia coli (E.coli) AA945579 dihydrodipicolinate synthase-like, mitochondrial Dhdpsl 293949 NM_001106355 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation 1375561_at BG372234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372234 /DB_XREF=gi:13268771 /DB_XREF=UI-R-CV0-bro-a-10-0-UI.s1 /CLONE=UI-R-CV0-bro-a-10-0-UI /FEA=EST /CNT=9 /TID=Rn.27551.1 /TIER=Stack /STK=7 /UG=Rn.27551 /UG_TITLE=ESTs BG372234 1375562_at BF408460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408460 /DB_XREF=gi:11396435 /DB_XREF=UI-R-BJ2-bre-a-04-0-UI.s1 /CLONE=UI-R-BJ2-bre-a-04-0-UI /FEA=EST /CNT=10 /TID=Rn.54951.1 /TIER=Stack /STK=7 /UG=Rn.54951 /UG_TITLE=ESTs BF408460 1375563_at AA944394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944394 /DB_XREF=gi:3104310 /DB_XREF=EST199893 /CLONE=REMAG50 /FEA=EST /CNT=9 /TID=Rn.24168.1 /TIER=Stack /STK=7 /UG=Rn.24168 /UG_TITLE=ESTs AA944394 ubiquitin domain containing 2 Ubtd2 287178 XM_001063674 /// XM_213249 1375564_at AI145796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145796 /DB_XREF=gi:3667595 /DB_XREF=UI-R-BT0-qi-c-11-0-UI.s1 /CLONE=UI-R-BT0-qi-c-11-0-UI /FEA=EST /CNT=9 /TID=Rn.24010.1 /TIER=Stack /STK=7 /UG=Rn.24010 /UG_TITLE=ESTs, Weakly similar to A54602 microtubule-associated serinethreonine protein kinase MAST205 - mouse (M.musculus) AI145796 microtubule associated serine/threonine kinase 3 Mast3 688540 NM_001134796 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1375565_at BF420723 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420723 /DB_XREF=gi:11408712 /DB_XREF=UI-R-BJ2-bpz-c-12-0-UI.s1 /CLONE=UI-R-BJ2-bpz-c-12-0-UI /FEA=EST /CNT=9 /TID=Rn.41817.1 /TIER=Stack /STK=7 /UG=Rn.41817 /UG_TITLE=ESTs BF420723 Translocase of inner mitochondrial membrane 22 homolog (yeast) Timm22 79463 XM_001080619 /// XM_340856 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation 1375566_at AI180275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180275 /DB_XREF=gi:3730913 /DB_XREF=EST224018 /CLONE=RSPCS71 /FEA=EST /CNT=9 /TID=Rn.8471.1 /TIER=Stack /STK=7 /UG=Rn.8471 /UG_TITLE=ESTs AI180275 angiotensin II receptor-associated protein Agtrap 298646 NM_001007654 0001666 // response to hypoxia // inferred from expression pattern /// 0007165 // signal transduction // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008217 // regulation of blood pressure // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0004945 // angiotensin type II receptor activity // inferred from electronic annotation /// 0004945 // angiotensin type II receptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375567_at AI710579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI710579 /DB_XREF=gi:5000355 /DB_XREF=UI-R-AG1-aal-g-08-0-UI.s1 /CLONE=UI-R-AG1-aal-g-08-0-UI /FEA=EST /CNT=9 /TID=Rn.41567.1 /TIER=Stack /STK=7 /UG=Rn.41567 /UG_TITLE=ESTs, Weakly similar to T25799 hypothetical protein F53F10.1 - Caenorhabditis elegans (C.elegans) AI710579 coiled-coil domain containing 102A Ccdc102a 361363 NM_001108437 1375568_at AI029171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029171 /DB_XREF=gi:4296711 /DB_XREF=UI-R-C0-iv-e-09-0-UI.s1 /CLONE=UI-R-C0-iv-e-09-0-UI /FEA=EST /CNT=9 /TID=Rn.54782.2 /TIER=Stack /STK=7 /UG=Rn.54782 /UG_TITLE=Rattus norvegicus socs-1 gene for suppressor of cytokine signalling 1 AI029171 Suppressor of cytokine signaling 1 Socs1 252971 NM_145879 0001932 // regulation of protein phosphorylation // inferred from electronic annotation /// 0001932 // regulation of protein phosphorylation // not recorded /// 0007259 // JAK-STAT cascade // not recorded /// 0007259 // JAK-STAT cascade // inferred from electronic annotation /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0040008 // regulation of growth // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042518 // negative regulation of tyrosine phosphorylation of Stat3 protein // inferred from electronic annotation /// 0042518 // negative regulation of tyrosine phosphorylation of Stat3 protein // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045444 // fat cell differentiation // not recorded /// 0046426 // negative regulation of JAK-STAT cascade // inferred from electronic annotation /// 0046426 // negative regulation of JAK-STAT cascade // not recorded /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from electronic annotation /// 0046627 // negative regulation of insulin receptor signaling pathway // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005159 // insulin-like growth factor receptor binding // inferred from electronic annotation /// 0005159 // insulin-like growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019210 // kinase inhibitor activity // inferred from electronic annotation /// 0019210 // kinase inhibitor activity // not recorded /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded 1375569_at BM386267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386267 /DB_XREF=gi:18186320 /DB_XREF=UI-R-CN1-cjf-o-10-0-UI.s1 /CLONE=UI-R-CN1-cjf-o-10-0-UI /FEA=EST /CNT=8 /TID=Rn.21591.1 /TIER=Stack /STK=7 /UG=Rn.21591 /UG_TITLE=ESTs BM386267 coiled-coil domain containing 92 Ccdc92 100036765 NM_001083898 1375570_at AI599986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599986 /DB_XREF=gi:4609034 /DB_XREF=EST251689 /CLONE=REMEK28 /FEA=EST /CNT=8 /TID=Rn.12161.1 /TIER=Stack /STK=7 /UG=Rn.12161 /UG_TITLE=ESTs, Moderately similar to NTC4 MOUSE NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 4 PRECURSOR (M.musculus) AI599986 Notch homolog 4 (Drosophila) Notch4 406162 NM_001002827 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001763 // morphogenesis of a branching structure // inferred from electronic annotation /// 0001763 // morphogenesis of a branching structure // not recorded /// 0001886 // endothelial cell morphogenesis // inferred from direct assay /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030879 // mammary gland development // inferred from electronic annotation /// 0030879 // mammary gland development // not recorded /// 0045446 // endothelial cell differentiation // inferred from direct assay /// 0045602 // negative regulation of endothelial cell differentiation // inferred from electronic annotation /// 0045602 // negative regulation of endothelial cell differentiation // not recorded /// 0050793 // regulation of developmental process // inferred from electronic annotation 0005886 // plasma membrane // inferred from mutant phenotype /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375571_at AW251798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251798 /DB_XREF=gi:6595389 /DB_XREF=UI-R-BJ0-adl-a-10-0-UI.s1 /CLONE=UI-R-BJ0-adl-a-10-0-UI /FEA=EST /CNT=8 /TID=Rn.17778.1 /TIER=Stack /STK=7 /UG=Rn.17778 /UG_TITLE=ESTs AW251798 Zinc finger, ZZ-type with EF hand domain 1 Zzef1 287476 XM_001080236 /// XM_002724514 /// XM_002724515 /// XM_002727781 /// XM_002727782 /// XM_237787 0030071 // regulation of mitotic metaphase/anaphase transition // inferred from electronic annotation 0005680 // anaphase-promoting complex // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1375572_at BE100602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100602 /DB_XREF=gi:8492498 /DB_XREF=UI-R-BJ1-auk-c-11-0-UI.s1 /CLONE=UI-R-BJ1-auk-c-11-0-UI /FEA=EST /CNT=8 /TID=Rn.6380.1 /TIER=Stack /STK=7 /UG=Rn.6380 /UG_TITLE=ESTs, Weakly similar to F23C8.9.p (Caenorhabditis elegans) (C.elegans) BE100602 Timeless interacting protein Tipin 363076 NM_001025287 0000076 // DNA replication checkpoint // not recorded /// 0000076 // DNA replication checkpoint // inferred from sequence or structural similarity /// 0000077 // DNA damage checkpoint // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0009411 // response to UV // not recorded /// 0031573 // intra-S DNA damage checkpoint // not recorded /// 0031573 // intra-S DNA damage checkpoint // inferred from sequence or structural similarity /// 0033261 // regulation of S phase // not recorded /// 0033261 // regulation of S phase // inferred from sequence or structural similarity /// 0048478 // replication fork protection // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000790 // nuclear chromatin // not recorded /// 0000790 // nuclear chromatin // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded 1375573_at BE120038 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120038 /DB_XREF=gi:8512143 /DB_XREF=UI-R-CA0-bao-h-04-0-UI.s1 /CLONE=UI-R-CA0-bao-h-04-0-UI /FEA=EST /CNT=8 /TID=Rn.53442.1 /TIER=Stack /STK=7 /UG=Rn.53442 /UG_TITLE=ESTs BE120038 1375574_at BE112983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112983 /DB_XREF=gi:8505088 /DB_XREF=UI-R-BJ1-awf-a-11-0-UI.s1 /CLONE=UI-R-BJ1-awf-a-11-0-UI /FEA=EST /CNT=8 /TID=Rn.33229.2 /TIER=Stack /STK=7 /UG=Rn.33229 /UG_TITLE=ESTs BE112983 golgi associated, gamma adaptin ear containing, ARF binding protein 3 Gga3 360658 NM_001108304 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0030117 // membrane coat // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0044431 // Golgi apparatus part // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030306 // ADP-ribosylation factor binding // not recorded 1375575_at BF403410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403410 /DB_XREF=gi:11391347 /DB_XREF=UI-R-CA1-biy-m-22-0-UI.s1 /CLONE=UI-R-CA1-biy-m-22-0-UI /FEA=EST /CNT=8 /TID=Rn.23087.1 /TIER=Stack /STK=7 /UG=Rn.23087 /UG_TITLE=ESTs BF403410 calcium/calmodulin-dependent protein kinase II beta Camk2b 24245 NM_001042354 /// NM_001042356 /// NM_021739 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // not recorded 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005954 // calcium- and calmodulin-dependent protein kinase complex // traceable author statement /// 0030666 // endocytic vesicle membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1375576_at BE113025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113025 /DB_XREF=gi:8505130 /DB_XREF=UI-R-BJ1-awf-e-07-0-UI.s1 /CLONE=UI-R-BJ1-awf-e-07-0-UI /FEA=EST /CNT=8 /TID=Rn.43667.1 /TIER=Stack /STK=7 /UG=Rn.43667 /UG_TITLE=ESTs BE113025 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 Ddx28 364995 NM_001108898 0005739 // mitochondrion // not recorded /// 0042645 // mitochondrial nucleoid // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1375577_at BF400031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400031 /DB_XREF=gi:11385006 /DB_XREF=UI-R-CA1-bia-d-08-0-UI.s1 /CLONE=UI-R-CA1-bia-d-08-0-UI /FEA=EST /CNT=8 /TID=Rn.61537.1 /TIER=Stack /STK=7 /UG=Rn.61537 /UG_TITLE=ESTs BF400031 1375578_at AI502009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502009 /DB_XREF=gi:4399860 /DB_XREF=UI-R-E0-de-a-05-0-UI.s1 /CLONE=UI-R-E0-de-a-05-0-UI /FEA=EST /CNT=8 /TID=Rn.20019.1 /TIER=Stack /STK=7 /UG=Rn.20019 /UG_TITLE=ESTs AI502009 1375579_at BG377374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377374 /DB_XREF=gi:13301846 /DB_XREF=UI-R-CU0-bvc-g-02-0-UI.s1 /CLONE=UI-R-CU0-bvc-g-02-0-UI /FEA=EST /CNT=8 /TID=Rn.41151.1 /TIER=Stack /STK=7 /UG=Rn.41151 /UG_TITLE=ESTs BG377374 hypothetical protein LOC690871 LOC690871 690871 NM_001195482 /// XM_001075950 /// XM_002724581 0005739 // mitochondrion // not recorded 1375580_at AI547421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547421 /DB_XREF=gi:4464909 /DB_XREF=UI-R-C3-tf-h-04-0-UI.s1 /CLONE=UI-R-C3-tf-h-04-0-UI /FEA=EST /CNT=8 /TID=Rn.41201.1 /TIER=Stack /STK=7 /UG=Rn.41201 /UG_TITLE=ESTs, Weakly similar to DPP4 RAT DIPEPTIDYL PEPTIDASE IV (R.norvegicus) AI547421 dipeptidyl peptidase 9 Dpp9 301130 XM_001061312 /// XM_217309 0006508 // proteolysis // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0008236 // serine-type peptidase activity // inferred from electronic annotation 1375581_at AW251171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251171 /DB_XREF=gi:6594762 /DB_XREF=UI-R-BJ0-adf-a-03-0-UI.s1 /CLONE=UI-R-BJ0-adf-a-03-0-UI /FEA=EST /CNT=8 /TID=Rn.44690.1 /TIER=Stack /STK=7 /UG=Rn.44690 /UG_TITLE=ESTs AW251171 dapper, antagonist of beta-catenin, homolog 3 (Xenopus laevis) Dact3 499088 NM_001191947 /// XM_002725536 /// XM_574375 1375582_at AW531902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531902 /DB_XREF=gi:7174316 /DB_XREF=UI-R-BS0-amj-f-10-0-UI.s1 /CLONE=UI-R-BS0-amj-f-10-0-UI /FEA=EST /CNT=8 /TID=Rn.24550.1 /TIER=Stack /STK=7 /UG=Rn.24550 /UG_TITLE=ESTs, Weakly similar to AT motif-binding factor (M.musculus) AW531902 zinc finger homeobox 4 Zfhx4 310250 NM_001191702 /// XM_001058915 /// XM_226964 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1375583_at BE110657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110657 /DB_XREF=gi:8502762 /DB_XREF=UI-R-BJ1-avu-e-05-0-UI.s1 /CLONE=UI-R-BJ1-avu-e-05-0-UI /FEA=EST /CNT=8 /TID=Rn.44893.1 /TIER=Stack /STK=7 /UG=Rn.44893 /UG_TITLE=ESTs BE110657 Hypothetical protein LOC688549 LOC688549 688549 XM_001067374 1375584_at BG376873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376873 /DB_XREF=gi:13301345 /DB_XREF=UI-R-CA1-bli-c-08-0-UI.s1 /CLONE=UI-R-CA1-bli-c-08-0-UI /FEA=EST /CNT=8 /TID=Rn.63282.1 /TIER=Stack /STK=7 /UG=Rn.63282 /UG_TITLE=ESTs BG376873 1375585_at BE111820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111820 /DB_XREF=gi:8503925 /DB_XREF=UI-R-BJ1-avz-b-07-0-UI.s1 /CLONE=UI-R-BJ1-avz-b-07-0-UI /FEA=EST /CNT=8 /TID=Rn.38969.1 /TIER=Stack /STK=7 /UG=Rn.38969 /UG_TITLE=ESTs BE111820 1375586_at BF413240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413240 /DB_XREF=gi:11401229 /DB_XREF=UI-R-BT1-bny-e-02-0-UI.s1 /CLONE=UI-R-BT1-bny-e-02-0-UI /FEA=EST /CNT=8 /TID=Rn.46481.1 /TIER=Stack /STK=7 /UG=Rn.46481 /UG_TITLE=ESTs BF413240 1375587_at AI412674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412674 /DB_XREF=gi:4256178 /DB_XREF=EST240973 /CLONE=RBRDK16 /FEA=EST /CNT=8 /TID=Rn.39334.1 /TIER=Stack /STK=7 /UG=Rn.39334 /UG_TITLE=ESTs, Highly similar to ADENYLOSUCCINATE SYNTHETASE, NON-MUSCLE ISOZYME (M.musculus) AI412674 Adenylosuccinate synthase Adss 289276 NM_001105975 0006164 // purine nucleotide biosynthetic process // inferred from electronic annotation /// 0006164 // purine nucleotide biosynthetic process // not recorded /// 0006167 // AMP biosynthetic process // not recorded /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004019 // adenylosuccinate synthase activity // inferred from electronic annotation /// 0004019 // adenylosuccinate synthase activity // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375588_at BF405893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405893 /DB_XREF=gi:11393868 /DB_XREF=UI-R-CA1-bii-c-08-0-UI.s1 /CLONE=UI-R-CA1-bii-c-08-0-UI /FEA=EST /CNT=7 /TID=Rn.63361.1 /TIER=Stack /STK=7 /UG=Rn.63361 /UG_TITLE=ESTs BF405893 FYVE, RhoGEF and PH domain containing 6 Fgd6 500824 NM_001137645 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375589_at BF405194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405194 /DB_XREF=gi:11393169 /DB_XREF=UI-R-CA1-biq-h-10-0-UI.s1 /CLONE=UI-R-CA1-biq-h-10-0-UI /FEA=EST /CNT=7 /TID=Rn.60693.1 /TIER=Stack /STK=7 /UG=Rn.60693 /UG_TITLE=ESTs BF405194 transmembrane protein 8A Tmem8a 303004 NM_001106991 0016021 // integral to membrane // inferred from electronic annotation 1375590_at AA894335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894335 /DB_XREF=gi:3021214 /DB_XREF=EST198138 /CLONE=RSPAW87 /FEA=EST /CNT=7 /TID=Rn.50148.1 /TIER=Stack /STK=7 /UG=Rn.50148 /UG_TITLE=ESTs, Moderately similar to T00368 hypothetical protein KIAA0663 (H.sapiens) AA894335 zinc finger CCCH-type containing 11A Zc3h11a 360845 NM_001047902 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375591_at AI101245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101245 /DB_XREF=gi:3706181 /DB_XREF=EST210534 /CLONE=RBRBK32 /FEA=EST /CNT=7 /TID=Rn.37864.2 /TIER=Stack /STK=7 /UG=Rn.37864 /UG_TITLE=ESTs AI101245 1375592_at BF406429 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406429 /DB_XREF=gi:11394404 /DB_XREF=UI-R-CA1-bjf-p-02-0-UI.s1 /CLONE=UI-R-CA1-bjf-p-02-0-UI /FEA=EST /CNT=7 /TID=Rn.63516.1 /TIER=Stack /STK=7 /UG=Rn.63516 /UG_TITLE=ESTs BF406429 1375593_at BF401589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401589 /DB_XREF=gi:11389564 /DB_XREF=UI-R-CA0-bgm-d-06-0-UI.s1 /CLONE=UI-R-CA0-bgm-d-06-0-UI /FEA=EST /CNT=7 /TID=Rn.60456.1 /TIER=Stack /STK=7 /UG=Rn.60456 /UG_TITLE=ESTs BF401589 1375594_at AA944254 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944254 /DB_XREF=gi:3104170 /DB_XREF=EST199753 /CLONE=REMAE28 /FEA=EST /CNT=7 /TID=Rn.54517.2 /TIER=Stack /STK=7 /UG=Rn.54517 /LL=59077 /UG_GENE=Gprk2l /UG_TITLE=G protein-coupled receptor kinase 2, groucho gene related (Drosophila) AA944254 G protein-coupled receptor kinase 4 Grk4 59077 NM_022928 0002029 // desensitization of G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0002031 // G-protein coupled receptor internalization // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005938 // cell cortex // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004703 // G-protein coupled receptor kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0050254 // rhodopsin kinase activity // inferred from direct assay 1375595_at AI231433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231433 /DB_XREF=gi:3815313 /DB_XREF=EST228121 /CLONE=REMDK10 /FEA=EST /CNT=7 /TID=Rn.23045.1 /TIER=Stack /STK=7 /UG=Rn.23045 /UG_TITLE=ESTs AI231433 ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) Arih1 300756 NM_001013108 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375596_at BI291219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291219 /DB_XREF=gi:14950554 /DB_XREF=UI-R-CV2-cgm-e-06-0-UI.s1 /CLONE=UI-R-CV2-cgm-e-06-0-UI /FEA=EST /CNT=7 /TID=Rn.73430.1 /TIER=Stack /STK=7 /UG=Rn.73430 /UG_TITLE=ESTs, Weakly similar to similar to C.elegans hypothetical protein CET01H8.1,CEC05C12.3,CEF54D1.5. similar to trp and trp-like proteins (H.sapiens) BI291219 transient receptor potential cation channel, subfamily M, member 1 Trpm1 361586 NM_001037733 /// NM_001037734 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007601 // visual perception // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0071482 // cellular response to light stimulus // inferred from electronic annotation /// 0071482 // cellular response to light stimulus // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation 1375597_at BI300655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300655 /DB_XREF=gi:14976935 /DB_XREF=UI-R-CV2-cih-g-06-0-UI.s1 /CLONE=UI-R-CV2-cih-g-06-0-UI /FEA=EST /CNT=7 /TID=Rn.61627.1 /TIER=Stack /STK=7 /UG=Rn.61627 /UG_TITLE=ESTs BI300655 1375598_at BE119628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119628 /DB_XREF=gi:8511733 /DB_XREF=UI-R-CA0-baz-b-05-0-UI.s1 /CLONE=UI-R-CA0-baz-b-05-0-UI /FEA=EST /CNT=7 /TID=Rn.61810.1 /TIER=Stack /STK=7 /UG=Rn.61810 /UG_TITLE=ESTs BE119628 1375599_at BF414469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414469 /DB_XREF=gi:11402458 /DB_XREF=UI-R-CA0-bpa-h-04-0-UI.s1 /CLONE=UI-R-CA0-bpa-h-04-0-UI /FEA=EST /CNT=7 /TID=Rn.63648.1 /TIER=Stack /STK=7 /UG=Rn.63648 /UG_TITLE=ESTs BF414469 1375600_at AI535065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535065 /DB_XREF=gi:4449200 /DB_XREF=UI-R-C3-sx-c-04-0-UI.s1 /CLONE=UI-R-C3-sx-c-04-0-UI /FEA=EST /CNT=7 /TID=Rn.34735.1 /TIER=Stack /STK=7 /UG=Rn.34735 /UG_TITLE=ESTs AI535065 phosphatidylinositol glycan anchor biosynthesis, class O Pigo 313341 XM_001069442 /// XM_233141 0006506 // GPI anchor biosynthetic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0016254 // preassembly of GPI anchor in ER membrane // not recorded 0005789 // endoplasmic reticulum membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375601_at BF410219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410219 /DB_XREF=gi:11398194 /DB_XREF=UI-R-CA1-bju-h-09-0-UI.s1 /CLONE=UI-R-CA1-bju-h-09-0-UI /FEA=EST /CNT=7 /TID=Rn.47561.1 /TIER=Stack /STK=7 /UG=Rn.47561 /UG_TITLE=ESTs BF410219 1375602_at BG378103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378103 /DB_XREF=gi:13302575 /DB_XREF=UI-R-CV1-bvo-a-02-0-UI.s1 /CLONE=UI-R-CV1-bvo-a-02-0-UI /FEA=EST /CNT=7 /TID=Rn.66540.1 /TIER=Stack /STK=7 /UG=Rn.66540 /UG_TITLE=ESTs BG378103 Ras and Rab interactor 2 Rin2 311494 NM_001107786 0007165 // signal transduction // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1375603_at AI716154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716154 /DB_XREF=gi:5033365 /DB_XREF=UI-R-Y0-abd-b-07-0-UI.s1 /CLONE=UI-R-Y0-abd-b-07-0-UI /FEA=EST /CNT=7 /TID=Rn.41513.1 /TIER=Stack /STK=7 /UG=Rn.41513 /UG_TITLE=ESTs AI716154 1375604_at AI059443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059443 /DB_XREF=gi:3333220 /DB_XREF=UI-R-C1-kw-f-12-0-UI.s1 /CLONE=UI-R-C1-kw-f-12-0-UI /FEA=EST /CNT=7 /TID=Rn.8922.1 /TIER=Stack /STK=7 /UG=Rn.8922 /UG_TITLE=ESTs AI059443 1375605_at AI008661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008661 /DB_XREF=gi:4132922 /DB_XREF=EST203112 /CLONE=REMBB36 /FEA=EST /CNT=7 /TID=Rn.22435.1 /TIER=Stack /STK=7 /UG=Rn.22435 /UG_TITLE=ESTs, Highly similar to JE0209 brain-specific angiogenesis inhibitor-associated protein 1 (H.sapiens) AI008661 Membrane associated guanylate kinase, WW and PDZ domain containing 1 Magi1 500261 NM_001030045 0005737 // cytoplasm // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1375606_at AI235906 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235906 /DB_XREF=gi:3829412 /DB_XREF=EST232468 /CLONE=ROVCY47 /FEA=EST /CNT=7 /TID=Rn.19482.1 /TIER=Stack /STK=7 /UG=Rn.19482 /UG_TITLE=ESTs AI235906 1375607_at AI112837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112837 /DB_XREF=gi:3512786 /DB_XREF=UI-R-E1-fq-b-09-0-UI.s1 /CLONE=UI-R-E1-fq-b-09-0-UI /FEA=EST /CNT=7 /TID=Rn.25029.1 /TIER=Stack /STK=7 /UG=Rn.25029 /UG_TITLE=ESTs, Highly similar to FXC2 RAT FORKHEAD BOX PROTEIN C2 (R.norvegicus) AI112837 forkhead box C2 Foxc2 171356 NM_001101680 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1375608_at AI137837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137837 /DB_XREF=gi:3638614 /DB_XREF=UI-R-C0-ig-e-11-0-UI.s1 /CLONE=UI-R-C0-ig-e-11-0-UI /FEA=EST /CNT=7 /TID=Rn.34747.1 /TIER=Stack /STK=7 /UG=Rn.34747 /UG_TITLE=ESTs AI137837 1375609_at AI137781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137781 /DB_XREF=gi:3638558 /DB_XREF=UI-R-E1-fz-a-06-0-UI.s1 /CLONE=UI-R-E1-fz-a-06-0-UI /FEA=EST /CNT=7 /TID=Rn.11595.1 /TIER=Stack /STK=7 /UG=Rn.11595 /UG_TITLE=ESTs AI137781 SET binding protein 1 Setbp1 291423 XM_001056790 /// XM_225744 0003677 // DNA binding // inferred from electronic annotation 1375610_at AW251839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251839 /DB_XREF=gi:6595430 /DB_XREF=UI-R-BJ0-adl-e-08-0-UI.s1 /CLONE=UI-R-BJ0-adl-e-08-0-UI /FEA=EST /CNT=7 /TID=Rn.7777.1 /TIER=Stack /STK=7 /UG=Rn.7777 /UG_TITLE=ESTs, Weakly similar to T18293 guanylate kinase-interacting protein 1 Maguin-1, membrane-associated - rat (R.norvegicus) AW251839 Pleckstrin homology domain containing, family A member 5 Plekha5 246237 XM_001073627 /// XM_342781 0005515 // protein binding // inferred from electronic annotation 1375611_at AI112487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112487 /DB_XREF=gi:3512436 /DB_XREF=UI-R-Y0-mg-a-07-0-UI.s1 /CLONE=UI-R-Y0-mg-a-07-0-UI /FEA=EST /CNT=7 /TID=Rn.23602.2 /TIER=Stack /STK=7 /UG=Rn.23602 /LL=114244 /UG_GENE=Hcn2 /UG_TITLE=hyperpolarization activated cyclic nucleotide-gated potassium channel 2 AI112487 hypothetical protein LOC100359454 LOC100359454 100359454 XM_002726874 /// XM_002729766 1375612_at AA965147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965147 /DB_XREF=gi:4280021 /DB_XREF=UI-R-C0-hc-h-02-0-UI.s1 /CLONE=UI-R-C0-hc-h-02-0-UI /FEA=EST /CNT=7 /TID=Rn.35870.2 /TIER=Stack /STK=7 /UG=Rn.35870 /LL=29578 /UG_GENE=Hnrpa1 /UG_TITLE=heterogeneous nuclear ribonucleoprotein A1 AA965147 1375613_at AW525075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525075 /DB_XREF=gi:7167460 /DB_XREF=UI-R-BJ0p-aim-e-08-0-UI.s1 /CLONE=UI-R-BJ0p-aim-e-08-0-UI /FEA=EST /CNT=7 /TID=Rn.8701.2 /TIER=Stack /STK=7 /UG=Rn.8701 /LL=29300 /UG_GENE=Gata6 /UG_TITLE=GATA-binding protein 6 AW525075 GATA binding protein 6 Gata6 29300 NM_019185 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0003148 // outflow tract septum morphogenesis // inferred from electronic annotation /// 0003148 // outflow tract septum morphogenesis // not recorded /// 0003309 // pancreatic B cell differentiation // inferred from electronic annotation /// 0003309 // pancreatic B cell differentiation // not recorded /// 0003310 // pancreatic A cell differentiation // inferred from electronic annotation /// 0003310 // pancreatic A cell differentiation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from expression pattern /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007492 // endoderm development // inferred from electronic annotation /// 0007492 // endoderm development // not recorded /// 0008584 // male gonad development // not recorded /// 0009636 // response to toxin // inferred from expression pattern /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0030513 // positive regulation of BMP signaling pathway // inferred from direct assay /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0031016 // pancreas development // inferred from electronic annotation /// 0031016 // pancreas development // not recorded /// 0032569 // gene-specific transcription from RNA polymerase II promoter // not recorded /// 0032569 // gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043627 // response to estrogen stimulus // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048645 // organ formation // inferred from electronic annotation /// 0048645 // organ formation // not recorded /// 0051145 // smooth muscle cell differentiation // not recorded /// 0051591 // response to cAMP // inferred from expression pattern /// 0051891 // positive regulation of cardioblast differentiation // inferred from electronic annotation /// 0051891 // positive regulation of cardioblast differentiation // not recorded /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // not recorded /// 0060430 // lung saccule development // inferred from electronic annotation /// 0060430 // lung saccule development // not recorded /// 0060486 // Clara cell differentiation // inferred from electronic annotation /// 0060486 // Clara cell differentiation // not recorded /// 0060510 // Type II pneumocyte differentiation // inferred from electronic annotation /// 0060510 // Type II pneumocyte differentiation // not recorded /// 0060575 // intestinal epithelial cell differentiation // inferred from electronic annotation /// 0060575 // intestinal epithelial cell differentiation // not recorded /// 0071371 // cellular response to gonadotropin stimulus // inferred from electronic annotation /// 0071371 // cellular response to gonadotropin stimulus // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from direct assay /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375614_at BE096447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096447 /DB_XREF=gi:8487378 /DB_XREF=UI-R-BU0-apg-c-05-0-UI.s1 /CLONE=UI-R-BU0-apg-c-05-0-UI /FEA=EST /CNT=7 /TID=Rn.47325.1 /TIER=Stack /STK=7 /UG=Rn.47325 /UG_TITLE=ESTs, Weakly similar to ZF94_RAT ZINC FINGER PROTEIN 94 (ZFP-94) (ZINC FINGER PROTEIN Y1) (RLZF-Y) (R.norvegicus) BE096447 PR domain containing 12 Prdm12 688699 XM_001067974 /// XM_002726082 0022008 // neurogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1375615_at AI575310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575310 /DB_XREF=gi:4559686 /DB_XREF=UI-R-Y0-vh-b-08-0-UI.s1 /CLONE=UI-R-Y0-vh-b-08-0-UI /FEA=EST /CNT=7 /TID=Rn.39098.2 /TIER=Stack /STK=7 /UG=Rn.39098 /LL=59109 /UG_GENE=Ntrk1 /UG_TITLE=trk precursor AI575310 Neurotrophic tyrosine kinase, receptor, type 1 Ntrk1 59109 NM_021589 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007190 // activation of adenylate cyclase activity // not recorded /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030183 // B cell differentiation // inferred from electronic annotation /// 0030183 // B cell differentiation // not recorded /// 0042490 // mechanoreceptor differentiation // inferred from electronic annotation /// 0042490 // mechanoreceptor differentiation // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded 0000139 // Golgi membrane // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005030 // neurotrophin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1375616_at BF419620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419620 /DB_XREF=gi:11407609 /DB_XREF=UI-R-CA0-bpe-c-09-0-UI.s1 /CLONE=UI-R-CA0-bpe-c-09-0-UI /FEA=EST /CNT=7 /TID=Rn.62687.2 /TIER=Stack /STK=7 /UG=Rn.62687 /LL=83610 /UG_GENE=Apba2 /UG_TITLE=amyloid beta (A4) precursor protein-binding, family A, member 2 (X11-like) BF419620 Amyloid beta (A4) precursor protein-binding, family A, member 2 Apba2 83610 NM_031780 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016079 // synaptic vesicle exocytosis // traceable author statement /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded 0005886 // plasma membrane // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // non-traceable author statement 1375617_at BF405090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405090 /DB_XREF=gi:11393065 /DB_XREF=UI-R-CA1-bip-e-06-0-UI.s1 /CLONE=UI-R-CA1-bip-e-06-0-UI /FEA=EST /CNT=7 /TID=Rn.63499.1 /TIER=Stack /STK=7 /UG=Rn.63499 /UG_TITLE=ESTs BF405090 1375618_at BF393791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393791 /DB_XREF=gi:11378654 /DB_XREF=UI-R-CA0-bgv-a-03-0-UI.s1 /CLONE=UI-R-CA0-bgv-a-03-0-UI /FEA=EST /CNT=7 /TID=Rn.64404.1 /TIER=Stack /STK=7 /UG=Rn.64404 /UG_TITLE=ESTs BF393791 1375619_at BF417982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417982 /DB_XREF=gi:11406011 /DB_XREF=UI-R-CA1-blv-e-09-0-UI.s1 /CLONE=UI-R-CA1-blv-e-09-0-UI /FEA=EST /CNT=7 /TID=Rn.63332.1 /TIER=Stack /STK=7 /UG=Rn.63332 /UG_TITLE=ESTs BF417982 1375620_at AI059291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059291 /DB_XREF=gi:4301703 /DB_XREF=UI-R-C1-lb-h-03-0-UI.s1 /CLONE=UI-R-C1-lb-h-03-0-UI /FEA=EST /CNT=7 /TID=Rn.9742.2 /TIER=Stack /STK=7 /UG=Rn.9742 /LL=29699 /UG_GENE=Prkar2a /UG_TITLE=protein kinase, cAMP dependent regulatory, type II alpha AI059291 Protein kinase, cAMP dependent regulatory, type II alpha Prkar2a 29699 NM_019264 0001932 // regulation of protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0034199 // activation of protein kinase A activity // not recorded /// 0045859 // regulation of protein kinase activity // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from direct assay 0000267 // cell fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005952 // cAMP-dependent protein kinase complex // inferred from direct assay /// 0005952 // cAMP-dependent protein kinase complex // inferred from electronic annotation /// 0030315 // T-tubule // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from direct assay /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from mutant phenotype /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030552 // cAMP binding // inferred from direct assay /// 0030552 // cAMP binding // inferred from electronic annotation /// 0034236 // protein kinase A catalytic subunit binding // inferred by curator /// 0042803 // protein homodimerization activity // inferred from direct assay 1375621_at AI575254 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575254 /DB_XREF=gi:4559630 /DB_XREF=UI-R-Y0-vc-d-06-0-UI.s1 /CLONE=UI-R-Y0-vc-d-06-0-UI /FEA=EST /CNT=7 /TID=Rn.27336.1 /TIER=Stack /STK=7 /UG=Rn.27336 /UG_TITLE=ESTs AI575254 sideroflexin 5 Sfxn5 261737 NM_153298 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006826 // iron ion transport // inferred from electronic annotation /// 0015746 // citrate transport // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0008324 // cation transmembrane transporter activity // inferred from electronic annotation /// 0015137 // citrate transmembrane transporter activity // inferred from direct assay 1375622_at BF402692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402692 /DB_XREF=gi:11390667 /DB_XREF=UI-R-CA0-bho-e-02-0-UI.s1 /CLONE=UI-R-CA0-bho-e-02-0-UI /FEA=EST /CNT=7 /TID=Rn.49517.1 /TIER=Stack /STK=7 /UG=Rn.49517 /UG_TITLE=ESTs BF402692 zinc finger, FYVE domain containing 20 Zfyve20 312562 NM_001107875 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375623_at BF392912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392912 /DB_XREF=gi:11377771 /DB_XREF=UI-R-CA0-bfq-f-10-0-UI.s1 /CLONE=UI-R-CA0-bfq-f-10-0-UI /FEA=EST /CNT=7 /TID=Rn.63404.1 /TIER=Stack /STK=7 /UG=Rn.63404 /UG_TITLE=ESTs BF392912 1375624_at BF405951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405951 /DB_XREF=gi:11393926 /DB_XREF=UI-R-CA1-bii-h-09-0-UI.s1 /CLONE=UI-R-CA1-bii-h-09-0-UI /FEA=EST /CNT=7 /TID=Rn.61427.1 /TIER=Stack /STK=7 /UG=Rn.61427 /UG_TITLE=ESTs BF405951 1375625_at BF405077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405077 /DB_XREF=gi:11393052 /DB_XREF=UI-R-CA1-bip-d-01-0-UI.s1 /CLONE=UI-R-CA1-bip-d-01-0-UI /FEA=EST /CNT=7 /TID=Rn.60807.1 /TIER=Stack /STK=7 /UG=Rn.60807 /UG_TITLE=ESTs BF405077 progestin and adipoQ receptor family member VIII Paqr8 316275 NM_001014099 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1375626_at BF416562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416562 /DB_XREF=gi:11404551 /DB_XREF=UI-R-CA1-bkt-b-02-0-UI.s1 /CLONE=UI-R-CA1-bkt-b-02-0-UI /FEA=EST /CNT=7 /TID=Rn.63066.1 /TIER=Stack /STK=7 /UG=Rn.63066 /UG_TITLE=ESTs BF416562 1375627_at BF407856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407856 /DB_XREF=gi:11395831 /DB_XREF=UI-R-BJ2-bqx-e-05-0-UI.s1 /CLONE=UI-R-BJ2-bqx-e-05-0-UI /FEA=EST /CNT=57 /TID=Rn.3858.1 /TIER=Stack /STK=6 /UG=Rn.3858 /UG_TITLE=ESTs, Weakly similar to T25404 hypothetical protein T28C6.1 - Caenorhabditis elegans (C.elegans) BF407856 akirin 2 Akirin2 297968 NM_001039914 0006350 // transcription // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0016481 // negative regulation of transcription // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0032755 // positive regulation of interleukin-6 production // inferred from electronic annotation /// 0032755 // positive regulation of interleukin-6 production // not recorded /// 0045087 // innate immune response // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0016566 // specific transcriptional repressor activity // inferred from direct assay 1375628_at AI059654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059654 /DB_XREF=gi:3333431 /DB_XREF=UI-R-C1-le-h-07-0-UI.s1 /CLONE=UI-R-C1-le-h-07-0-UI /FEA=EST /CNT=70 /TID=Rn.3383.1 /TIER=Stack /STK=6 /UG=Rn.3383 /UG_TITLE=ESTs, Moderately similar to NADH:ubiquinone oxidoreductase ASHI subunit (H.sapiens) AI059654 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8 Ndufb8 293991 NM_001106360 0006120 // mitochondrial electron transport, NADH to ubiquinone // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005747 // mitochondrial respiratory chain complex I // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded 0003954 // NADH dehydrogenase activity // inferred from electronic annotation /// 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from electronic annotation 1375629_at AI230371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230371 /DB_XREF=gi:3814258 /DB_XREF=EST227066 /CLONE=REMCV69 /FEA=EST /CNT=34 /TID=Rn.40177.2 /TIER=Stack /STK=6 /UG=Rn.40177 /LL=25328 /UG_GENE=Lamp1 /UG_TITLE=Lysosomal associated membrane protein 1 (120 kDa) AI230371 1375630_at AA859366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859366 /DB_XREF=gi:4229714 /DB_XREF=UI-R-E0-cl-d-06-0-UI.s1 /CLONE=UI-R-E0-cl-d-06-0-UI /FEA=EST /CNT=52 /TID=Rn.1293.1 /TIER=Stack /STK=6 /UG=Rn.1293 /UG_TITLE=ESTs, Highly similar to NHPX RAT NHP2RS6 FAMILY PROTEIN YEL026W HOMOLOG (R.norvegicus) AA859366 NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) Nhp2l1 300092 NM_212515 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation 1375631_at AI177176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177176 /DB_XREF=gi:3727814 /DB_XREF=EST220783 /CLONE=ROVCB76 /FEA=EST /CNT=34 /TID=Rn.1410.1 /TIER=Stack /STK=6 /UG=Rn.1410 /UG_TITLE=ESTs AI177176 pleckstrin homology domain containing, family B (evectins) member 2 Plekhb2 301337 NM_001106899 0005515 // protein binding // not recorded 1375632_at H35210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H35210 /DB_XREF=gi:980627 /DB_XREF=EST110736 /CLONE=RPNBL46 /FEA=EST /CNT=29 /TID=Rn.2510.1 /TIER=Stack /STK=6 /UG=Rn.2510 /UG_TITLE=ESTs, Weakly similar to ARL4 MOUSE ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 4 (R.norvegicus) H35210 ribosomal protein L38 Rpl38 689284 NM_001077592 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375633_at AI012221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012221 /DB_XREF=gi:3226053 /DB_XREF=EST206672 /CLONE=RPLAU15 /FEA=EST /CNT=28 /TID=Rn.7103.1 /TIER=Stack /STK=6 /UG=Rn.7103 /UG_TITLE=ESTs, Weakly similar to intracellular chloride ion channel protein p64H1 (Rattus norvegicus) (R.norvegicus) AI012221 chloride intracellular channel 1 Clic1 406864 NM_001002807 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from electronic annotation /// 0006821 // chloride transport // not recorded /// 0006821 // chloride transport // traceable author statement 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from sequence or structural similarity /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005625 // soluble fraction // inferred from sequence or structural similarity /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005635 // nuclear envelope // traceable author statement /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005247 // voltage-gated chloride channel activity // inferred from electronic annotation /// 0005247 // voltage-gated chloride channel activity // traceable author statement /// 0005254 // chloride channel activity // not recorded /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375634_at AA799472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799472 /DB_XREF=gi:2862427 /DB_XREF=EST188969 /CLONE=RHEAB43 /FEA=EST /CNT=28 /TID=Rn.8525.1 /TIER=Stack /STK=6 /UG=Rn.8525 /UG_TITLE=ESTs, Moderately similar to YCB6_HUMAN HYPOTHETICAL PROTEIN CGI-116 (H.sapiens) AA799472 coiled-coil domain containing 53 Ccdc53 299707 NM_001106776 0071203 // WASH complex // not recorded 0005515 // protein binding // not recorded 1375635_at AI406410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406410 /DB_XREF=gi:4249914 /DB_XREF=EST234696 /CLONE=RBRDT64 /FEA=EST /CNT=34 /TID=Rn.1619.1 /TIER=Stack /STK=6 /UG=Rn.1619 /UG_TITLE=ESTs AI406410 1375636_at AI600042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600042 /DB_XREF=gi:4609090 /DB_XREF=EST251745 /CLONE=REMDO72 /FEA=EST /CNT=29 /TID=Rn.4231.2 /TIER=Stack /STK=6 /UG=Rn.4231 /UG_TITLE=ESTs, Weakly similar to 0806162N protein URFA6L (M.musculus) AI600042 1375637_at AI010441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010441 /DB_XREF=gi:3224273 /DB_XREF=EST204892 /CLONE=RLUBZ51 /FEA=EST /CNT=26 /TID=Rn.2533.1 /TIER=Stack /STK=6 /UG=Rn.2533 /UG_TITLE=ESTs AI010441 similar to RIKEN cDNA 1110003E01 RGD1311122 364154 NM_001037792 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1375638_at AI009714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009714 /DB_XREF=gi:3223546 /DB_XREF=EST204165 /CLONE=RLUBN60 /FEA=EST /CNT=26 /TID=Rn.2472.1 /TIER=Stack /STK=6 /UG=Rn.2472 /UG_TITLE=ESTs AI009714 serum deprivation response Sdpr 316384 NM_001007712 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0005901 // caveola // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0001786 // phosphatidylserine binding // not recorded /// 0001786 // phosphatidylserine binding // inferred from sequence or structural similarity /// 0001786 // phosphatidylserine binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation 1375639_at AA850881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850881 /DB_XREF=gi:2938421 /DB_XREF=EST193649 /CLONE=ROVAL94 /FEA=EST /CNT=22 /TID=Rn.4132.1 /TIER=Stack /STK=6 /UG=Rn.4132 /UG_TITLE=ESTs AA850881 E2F transcription factor 6 E2f6 313978 NM_001100717 /// XM_001069501 /// XM_233986 0000083 // regulation of transcription involved in G1/S phase of mitotic cell cycle // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0071339 // MLL1 complex // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1375640_at AI236786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236786 /DB_XREF=gi:3830292 /DB_XREF=EST233348 /CLONE=ROVDK50 /FEA=EST /CNT=22 /TID=Rn.3625.1 /TIER=Stack /STK=6 /UG=Rn.3625 /UG_TITLE=ESTs, Weakly similar to FK506 binding protein 2 (13 kDa) (Rattus norvegicus) (R.norvegicus) AI236786 FK506 binding protein 9 Fkbp9 297123 NM_001007646 0006457 // protein folding // inferred from electronic annotation /// 0006457 // protein folding // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation 1375641_at BI296526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296526 /DB_XREF=gi:14961037 /DB_XREF=UI-R-CV2-cgs-c-05-0-UI.s1 /CLONE=UI-R-CV2-cgs-c-05-0-UI /FEA=EST /CNT=21 /TID=Rn.3597.1 /TIER=Stack /STK=6 /UG=Rn.3597 /UG_TITLE=ESTs, Weakly similar to AR16_HUMAN ARP23 COMPLEX 16 KDA SUBUNIT (H.sapiens) BI296526 actin related protein 2/3 complex, subunit 5-like Arpc5l 296710 NM_001037767 0030833 // regulation of actin filament polymerization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1375642_at AA892795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892795 /DB_XREF=gi:3019674 /DB_XREF=EST196598 /CLONE=RKIAX38 /FEA=EST /CNT=20 /TID=Rn.3530.2 /TIER=Stack /STK=6 /UG=Rn.3530 /LL=81816 /UG_GENE=LOC81816 /UG_TITLE=ubiquitin conjugating enzyme AA892795 ubiquitin-conjugating enzyme E2B (RAD6 homolog, S. cerevisiae) Ube2b 81816 NM_031138 0000209 // protein polyubiquitination // inferred from electronic annotation /// 0000209 // protein polyubiquitination // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006281 // DNA repair // not recorded /// 0006301 // postreplication repair // not recorded /// 0006344 // maintenance of chromatin silencing // inferred from electronic annotation /// 0006344 // maintenance of chromatin silencing // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from expression pattern /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0006513 // protein monoubiquitination // inferred from electronic annotation /// 0006513 // protein monoubiquitination // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007288 // sperm axoneme assembly // inferred from electronic annotation /// 0007288 // sperm axoneme assembly // not recorded /// 0009411 // response to UV // inferred from electronic annotation /// 0009411 // response to UV // not recorded /// 0010845 // positive regulation of reciprocal meiotic recombination // inferred from electronic annotation /// 0010845 // positive regulation of reciprocal meiotic recombination // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0031056 // regulation of histone modification // inferred from electronic annotation /// 0031056 // regulation of histone modification // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0033128 // negative regulation of histone phosphorylation // inferred from electronic annotation /// 0033128 // negative regulation of histone phosphorylation // not recorded /// 0033522 // histone H2A ubiquitination // inferred from electronic annotation /// 0033522 // histone H2A ubiquitination // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0043951 // negative regulation of cAMP-mediated signaling // not recorded /// 0050821 // protein stabilization // inferred from electronic annotation /// 0050821 // protein stabilization // not recorded /// 0051026 // chiasma assembly // inferred from electronic annotation /// 0051026 // chiasma assembly // not recorded /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051865 // protein autoubiquitination // inferred from electronic annotation /// 0051865 // protein autoubiquitination // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0070076 // histone lysine demethylation // inferred from electronic annotation /// 0070076 // histone lysine demethylation // not recorded /// 0070193 // synaptonemal complex organization // inferred from electronic annotation /// 0070193 // synaptonemal complex organization // not recorded /// 0070534 // protein K63-linked ubiquitination // not recorded /// 0070534 // protein K63-linked ubiquitination // inferred from sequence or structural similarity /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0070936 // protein K48-linked ubiquitination // inferred from sequence or structural similarity /// 0070979 // protein K11-linked ubiquitination // not recorded /// 0070979 // protein K11-linked ubiquitination // inferred from sequence or structural similarity 0000785 // chromatin // not recorded /// 0000785 // chromatin // inferred from electronic annotation /// 0000790 // nuclear chromatin // inferred from electronic annotation /// 0000790 // nuclear chromatin // not recorded /// 0001741 // XY body // inferred from electronic annotation /// 0001741 // XY body // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005657 // replication fork // inferred from electronic annotation /// 0005657 // replication fork // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded 1375643_at BM384259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384259 /DB_XREF=gi:18184312 /DB_XREF=UI-R-DZ0-cks-i-17-0-UI.s1 /CLONE=UI-R-DZ0-cks-i-17-0-UI /FEA=EST /CNT=21 /TID=Rn.8994.1 /TIER=Stack /STK=6 /UG=Rn.8994 /UG_TITLE=ESTs BM384259 cytoskeleton-associated protein 4 Ckap4 362859 NM_001108740 0005783 // endoplasmic reticulum // not recorded 1375644_at AI170561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170561 /DB_XREF=gi:3710601 /DB_XREF=EST216493 /CLONE=RLUCQ79 /FEA=EST /CNT=25 /TID=Rn.33243.1 /TIER=Stack /STK=6 /UG=Rn.33243 /UG_TITLE=ESTs AI170561 1375645_at AI408842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408842 /DB_XREF=gi:4252346 /DB_XREF=EST237133 /CLONE=RKIDP29 /FEA=EST /CNT=22 /TID=Rn.22136.1 /TIER=Stack /STK=6 /UG=Rn.22136 /UG_TITLE=ESTs, Highly similar to T08712 hypothetical protein DKFZp566C0424.1 (H.sapiens) AI408842 similar to DNA segment, Chr 4, ERATO Doi 22, expressed RGD1560286 500575 NM_001100798 /// NM_001114599 1375646_at BI299709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299709 /DB_XREF=gi:14975989 /DB_XREF=UI-R-CV2-chw-d-03-0-UI.s1 /CLONE=UI-R-CV2-chw-d-03-0-UI /FEA=EST /CNT=14 /TID=Rn.19448.1 /TIER=Stack /STK=6 /UG=Rn.19448 /UG_TITLE=ESTs, Weakly similar to CALM_HUMAN CALMODULIN (R.norvegicus) BI299709 EF-hand calcium binding domain 2 Efcab2 289280 NM_001105977 0005509 // calcium ion binding // inferred from electronic annotation 1375647_at BG671943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671943 /DB_XREF=gi:13894042 /DB_XREF=DRNBZH09 /CLONE=DRNBZH09 /FEA=EST /CNT=20 /TID=Rn.7207.1 /TIER=Stack /STK=6 /UG=Rn.7207 /UG_TITLE=ESTs BG671943 1375648_at BE113026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113026 /DB_XREF=gi:8505131 /DB_XREF=UI-R-BJ1-awf-e-08-0-UI.s1 /CLONE=UI-R-BJ1-awf-e-08-0-UI /FEA=EST /CNT=13 /TID=Rn.22439.1 /TIER=Stack /STK=6 /UG=Rn.22439 /UG_TITLE=ESTs, Weakly similar to hypothetical protein (H.sapiens) BE113026 hypothetical protein LOC100361389 LOC100361389 100361389 XM_002727821 1375649_at BF396469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396469 /DB_XREF=gi:11381441 /DB_XREF=UI-R-BS2-bdy-e-07-0-UI.s1 /CLONE=UI-R-BS2-bdy-e-07-0-UI /FEA=EST /CNT=14 /TID=Rn.62756.1 /TIER=Stack /STK=6 /UG=Rn.62756 /UG_TITLE=ESTs BF396469 1375650_at BM389207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389207 /DB_XREF=gi:18189260 /DB_XREF=UI-R-DZ0-cko-e-16-0-UI.s1 /CLONE=UI-R-DZ0-cko-e-16-0-UI /FEA=EST /CNT=14 /TID=Rn.12110.1 /TIER=Stack /STK=6 /UG=Rn.12110 /UG_TITLE=ESTs, Weakly similar to CBP MOUSE CREB-BINDING PROTEIN (M.musculus) BM389207 bromodomain containing 4 Brd4 362844 NM_001100903 0006468 // protein phosphorylation // not recorded /// 0043388 // positive regulation of DNA binding // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded 1375651_at AI230164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230164 /DB_XREF=gi:3814051 /DB_XREF=EST226859 /CLONE=REMCT13 /FEA=EST /CNT=14 /TID=Rn.37575.4 /TIER=Stack /STK=6 /UG=Rn.37575 /LL=117557 /UG_GENE=Tpm3 /UG_TITLE=tropomyosin 3, gamma AI230164 NADH dehydrogenase subunit 1 ND1 26193 0006810 // transport // inferred from electronic annotation /// 0006950 // response to stress // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0022900 // electron transport chain // inferred from electronic annotation /// 0033194 // response to hydroperoxide // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // not recorded /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1375652_at BI285910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285910 /DB_XREF=gi:14940031 /DB_XREF=UI-R-CX0s-ccp-c-06-0-UI.s1 /CLONE=UI-R-CX0s-ccp-c-06-0-UI /FEA=EST /CNT=13 /TID=Rn.3264.1 /TIER=Stack /STK=6 /UG=Rn.3264 /UG_TITLE=ESTs BI285910 signal sequence receptor, gamma Ssr3 81784 NM_031120 0006613 // cotranslational protein targeting to membrane // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005784 // Sec61 translocon complex // non-traceable author statement /// 0005784 // Sec61 translocon complex // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1375653_at BE109405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109405 /DB_XREF=gi:8501510 /DB_XREF=UI-R-BJ1-aur-f-10-0-UI.s1 /CLONE=UI-R-BJ1-aur-f-10-0-UI /FEA=EST /CNT=12 /TID=Rn.21687.1 /TIER=Stack /STK=6 /UG=Rn.21687 /UG_TITLE=ESTs BE109405 1375654_at BI278813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278813 /DB_XREF=gi:14926027 /DB_XREF=UI-R-CX0-bwx-c-01-0-UI.s1 /CLONE=UI-R-CX0-bwx-c-01-0-UI /FEA=EST /CNT=12 /TID=Rn.20834.1 /TIER=Stack /STK=6 /UG=Rn.20834 /UG_TITLE=ESTs, Moderately similar to S33377 P63 protein (H.sapiens) BI278813 cytoskeleton-associated protein 4 Ckap4 362859 NM_001108740 0005783 // endoplasmic reticulum // not recorded 1375655_at BE107208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107208 /DB_XREF=gi:8499313 /DB_XREF=UI-R-BS1-ayr-b-04-0-UI.s1 /CLONE=UI-R-BS1-ayr-b-04-0-UI /FEA=EST /CNT=12 /TID=Rn.22668.1 /TIER=Stack /STK=6 /UG=Rn.22668 /UG_TITLE=ESTs, Weakly similar to MLH3_HUMAN DNA MISMATCH REPAIR PROTEIN MLH3 (MUTL PROTEIN HOMOLOG 3) (H.sapiens) BE107208 1375656_at AI717725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717725 /DB_XREF=gi:5034981 /DB_XREF=UI-R-Y0-acq-g-09-0-UI.s1 /CLONE=UI-R-Y0-acq-g-09-0-UI /FEA=EST /CNT=12 /TID=Rn.23607.1 /TIER=Stack /STK=6 /UG=Rn.23607 /UG_TITLE=ESTs, Highly similar to T17271 hypothetical protein DKFZp434B0335.1 (H.sapiens) AI717725 tectonin beta-propeller repeat containing 1 Tecpr1 304285 NM_001037191 0016021 // integral to membrane // inferred from electronic annotation 1375657_at BE107438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107438 /DB_XREF=gi:8499543 /DB_XREF=UI-R-BS1-ayt-f-11-0-UI.s1 /CLONE=UI-R-BS1-ayt-f-11-0-UI /FEA=EST /CNT=12 /TID=Rn.5838.1 /TIER=Stack /STK=6 /UG=Rn.5838 /UG_TITLE=ESTs BE107438 1375658_at AI412317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412317 /DB_XREF=gi:4255821 /DB_XREF=EST240615 /CLONE=RBRDV25 /FEA=EST /CNT=11 /TID=Rn.22768.1 /TIER=Stack /STK=6 /UG=Rn.22768 /UG_TITLE=ESTs AI412317 1375659_at BG381529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381529 /DB_XREF=gi:13306001 /DB_XREF=UI-R-CT0-buk-d-04-0-UI.s1 /CLONE=UI-R-CT0-buk-d-04-0-UI /FEA=EST /CNT=11 /TID=Rn.8078.1 /TIER=Stack /STK=6 /UG=Rn.8078 /UG_TITLE=ESTs BG381529 Sec61 alpha 2 subunit (S. cerevisiae) Sec61a2 361273 NM_001170343 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from electronic annotation /// 0043022 // ribosome binding // not recorded 1375660_at AA943694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943694 /DB_XREF=gi:3103610 /DB_XREF=EST199193 /CLONE=RBRAN85 /FEA=EST /CNT=18 /TID=Rn.23507.1 /TIER=Stack /STK=6 /UG=Rn.23507 /UG_TITLE=ESTs AA943694 septin 8 Sept8 303135 NM_001107002 0007049 // cell cycle // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0031105 // septin complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1375661_at BE104180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104180 /DB_XREF=gi:8496280 /DB_XREF=UI-R-BX0-arl-f-11-0-UI.s1 /CLONE=UI-R-BX0-arl-f-11-0-UI /FEA=EST /CNT=14 /TID=Rn.12111.2 /TIER=Stack /STK=6 /UG=Rn.12111 /UG_TITLE=ESTs BE104180 1375662_at BI291391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291391 /DB_XREF=gi:14950891 /DB_XREF=UI-R-CV2-cgp-e-11-0-UI.s1 /CLONE=UI-R-CV2-cgp-e-11-0-UI /FEA=EST /CNT=12 /TID=Rn.8776.2 /TIER=Stack /STK=6 /UG=Rn.8776 /UG_TITLE=ESTs BI291391 hypothetical protein LOC100360120 LOC100360120 100360120 XM_002726470 /// XM_002729434 1375663_at AI232346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232346 /DB_XREF=gi:3816226 /DB_XREF=EST229034 /CLONE=RKICA50 /FEA=EST /CNT=12 /TID=Rn.22266.1 /TIER=Stack /STK=6 /UG=Rn.22266 /UG_TITLE=ESTs AI232346 ubiquitin-conjugating enzyme E2F (putative) Ube2f 363284 NM_001008381 0043687 // post-translational protein modification // inferred from electronic annotation /// 0045116 // protein neddylation // not recorded /// 0045116 // protein neddylation // inferred from sequence or structural similarity /// 0045116 // protein neddylation // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation /// 0019788 // NEDD8 ligase activity // not recorded /// 0019788 // NEDD8 ligase activity // inferred from sequence or structural similarity /// 0019788 // NEDD8 ligase activity // inferred from electronic annotation 1375664_at BI294732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294732 /DB_XREF=gi:14957473 /DB_XREF=UI-R-DK0-ceb-d-10-0-UI.s1 /CLONE=UI-R-DK0-ceb-d-10-0-UI /FEA=EST /CNT=11 /TID=Rn.2857.1 /TIER=Stack /STK=6 /UG=Rn.2857 /UG_TITLE=ESTs BI294732 Trinucleotide repeat containing 6a Tnrc6a 308971 NM_001107549 0009267 // cellular response to starvation // not recorded /// 0035278 // negative regulation of translation involved in gene silencing by miRNA // not recorded 0035068 // micro-ribonucleoprotein complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1375665_at BF410565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410565 /DB_XREF=gi:11398540 /DB_XREF=UI-R-CA0-bma-c-01-0-UI.s1 /CLONE=UI-R-CA0-bma-c-01-0-UI /FEA=EST /CNT=11 /TID=Rn.46129.1 /TIER=Stack /STK=6 /UG=Rn.46129 /UG_TITLE=ESTs, Highly similar to checkpoint suppressor 1 (H.sapiens) BF410565 Forkhead box N3 Foxn3 314374 NM_001108047 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1375666_at BE098802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098802 /DB_XREF=gi:8490671 /DB_XREF=UI-R-BJ1-ate-a-07-0-UI.s1 /CLONE=UI-R-BJ1-ate-a-07-0-UI /FEA=EST /CNT=10 /TID=Rn.4060.1 /TIER=Stack /STK=6 /UG=Rn.4060 /UG_TITLE=ESTs BE098802 cyclin D binding myb-like transcription factor 1 Dmtf1 114485 NM_053693 0006350 // transcription // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1375667_at AW434286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434286 /DB_XREF=gi:6965593 /DB_XREF=UI-R-BJ0p-afw-d-09-0-UI.s1 /CLONE=UI-R-BJ0p-afw-d-09-0-UI /FEA=EST /CNT=10 /TID=Rn.62722.1 /TIER=Stack /STK=6 /UG=Rn.62722 /UG_TITLE=ESTs AW434286 1375668_at AW525189 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525189 /DB_XREF=gi:7167574 /DB_XREF=UI-R-BJ0p-aio-g-11-0-UI.s1 /CLONE=UI-R-BJ0p-aio-g-11-0-UI /FEA=EST /CNT=10 /TID=Rn.25735.1 /TIER=Stack /STK=6 /UG=Rn.25735 /UG_TITLE=ESTs, Highly similar to T00334 hypothetical protein KIAA0562 (H.sapiens) AW525189 1375669_at BI285619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285619 /DB_XREF=gi:14939454 /DB_XREF=UI-R-CW0-bvv-g-05-0-UI.s2 /CLONE=UI-R-CW0-bvv-g-05-0-UI /FEA=EST /CNT=10 /TID=Rn.48845.1 /TIER=Stack /STK=6 /UG=Rn.48845 /UG_TITLE=ESTs, Weakly similar to FK506 binding protein 2 (13 kDa) (Rattus norvegicus) (R.norvegicus) BI285619 FK506 binding protein 2 Fkbp2 293702 NM_001134428 /// NM_001134429 0006457 // protein folding // inferred from electronic annotation 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation 1375670_at BF407919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407919 /DB_XREF=gi:11395894 /DB_XREF=UI-R-C3-sx-f-09-0-UI.s2 /CLONE=UI-R-C3-sx-f-09-0-UI /FEA=EST /CNT=10 /TID=Rn.33328.1 /TIER=Stack /STK=6 /UG=Rn.33328 /UG_TITLE=ESTs BF407919 1375671_at AW525127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525127 /DB_XREF=gi:7167512 /DB_XREF=UI-R-BJ0p-aio-b-02-0-UI.s1 /CLONE=UI-R-BJ0p-aio-b-02-0-UI /FEA=EST /CNT=10 /TID=Rn.9133.1 /TIER=Stack /STK=6 /UG=Rn.9133 /UG_TITLE=ESTs, Highly similar to bromodomain containing protein 1; BR140-like gene (Homo sapiens) (H.sapiens) AW525127 Bromodomain containing 1 Brd1 315210 NM_001108103 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375672_at BG380279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380279 /DB_XREF=gi:13304751 /DB_XREF=UI-R-CS0-btv-b-12-0-UI.s1 /CLONE=UI-R-CS0-btv-b-12-0-UI /FEA=EST /CNT=10 /TID=Rn.23899.1 /TIER=Stack /STK=6 /UG=Rn.23899 /UG_TITLE=ESTs BG380279 1375673_at AI102620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102620 /DB_XREF=gi:3707344 /DB_XREF=EST211909 /CLONE=REMBQ09 /FEA=EST /CNT=10 /TID=Rn.9056.1 /TIER=Stack /STK=6 /UG=Rn.9056 /UG_TITLE=ESTs AI102620 1375674_at BI294949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294949 /DB_XREF=gi:14957904 /DB_XREF=UI-R-DK0-cee-a-04-0-UI.s1 /CLONE=UI-R-DK0-cee-a-04-0-UI /FEA=EST /CNT=10 /TID=Rn.41195.1 /TIER=Stack /STK=6 /UG=Rn.41195 /UG_TITLE=ESTs, Weakly similar to B48013 proline-rich proteoglycan 2 precursor, parotid - rat (R.norvegicus) BI294949 similar to chromosome 16 open reading frame 5 RGD1310686 360480 NM_001008360 0006915 // apoptosis // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0033209 // tumor necrosis factor-mediated signaling pathway // not recorded /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded 0005634 // nucleus // not recorded 1375675_at AA892813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892813 /DB_XREF=gi:4132210 /DB_XREF=EST196616 /CLONE=RKIAX58 /FEA=EST /CNT=9 /TID=Rn.1940.1 /TIER=Stack /STK=6 /UG=Rn.1940 /UG_TITLE=ESTs, Weakly similar to MBNL_MOUSE Muscleblind-like protein (Triplet-expansion RNA-binding protein) (M.musculus) AA892813 Muscleblind-like 2 Mbnl2 680445 NM_001111064 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1375676_at AA956897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956897 /DB_XREF=gi:4239371 /DB_XREF=UI-R-E1-fr-b-04-0-UI.s1 /CLONE=UI-R-E1-fr-b-04-0-UI /FEA=EST /CNT=9 /TID=Rn.9461.1 /TIER=Stack /STK=6 /UG=Rn.9461 /UG_TITLE=ESTs AA956897 1375677_at BI275222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275222 /DB_XREF=gi:14886855 /DB_XREF=UI-R-CX0-bwr-a-06-0-UI.s1 /CLONE=UI-R-CX0-bwr-a-06-0-UI /FEA=EST /CNT=9 /TID=Rn.23198.1 /TIER=Stack /STK=6 /UG=Rn.23198 /UG_TITLE=ESTs, Moderately similar to transducer of ERBB2, 2 (Mus musculus) (M.musculus) BI275222 transducer of ERBB2, 2 Tob2 315159 NM_001007146 0010468 // regulation of gene expression // not recorded /// 0045671 // negative regulation of osteoclast differentiation // not recorded /// 0045778 // positive regulation of ossification // not recorded 0042809 // vitamin D receptor binding // not recorded 1375678_at AI412430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412430 /DB_XREF=gi:4255934 /DB_XREF=EST240729 /CLONE=RBRDO69 /FEA=EST /CNT=9 /TID=Rn.7514.2 /TIER=Stack /STK=6 /UG=Rn.7514 /UG_TITLE=ESTs, Moderately similar to ETS-DOMAIN PROTEIN ELK-1 (M.musculus) AI412430 1375679_at AI409392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409392 /DB_XREF=gi:4252896 /DB_XREF=EST237684 /CLONE=RKIDX68 /FEA=EST /CNT=9 /TID=Rn.38292.1 /TIER=Stack /STK=6 /UG=Rn.38292 /UG_TITLE=ESTs AI409392 similar to RIKEN cDNA 2310035C23 RGD1307235 309053 NM_001134546 0005488 // binding // inferred from electronic annotation 1375680_at BG380705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380705 /DB_XREF=gi:13305177 /DB_XREF=UI-R-CT0-bua-e-02-0-UI.s1 /CLONE=UI-R-CT0-bua-e-02-0-UI /FEA=EST /CNT=9 /TID=Rn.41252.1 /TIER=Stack /STK=6 /UG=Rn.41252 /UG_TITLE=ESTs BG380705 1375681_at AA944549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944549 /DB_XREF=gi:3104465 /DB_XREF=EST200048 /CLONE=REMAK89 /FEA=EST /CNT=9 /TID=Rn.12890.1 /TIER=Stack /STK=6 /UG=Rn.12890 /UG_TITLE=ESTs AA944549 DDB1 and CUL4 associated factor 15 Dcaf15 304653 NM_001107162 1375682_at BM382879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM382879 /DB_XREF=gi:18182932 /DB_XREF=UI-R-BT1-bko-h-10-0-UI.s1 /CLONE=UI-R-BT1-bko-h-10-0-UI /FEA=EST /CNT=9 /TID=Rn.46393.1 /TIER=Stack /STK=6 /UG=Rn.46393 /UG_TITLE=ESTs, Highly similar to PUR MOUSE TRANSCRIPTIONAL ACTIVATOR PROTEIN PUR-ALPHA (M.musculus) BM382879 Purine rich element binding protein A Pura 307498 XM_001063244 /// XM_226016 0006268 // DNA unwinding involved in replication // inferred from electronic annotation /// 0006268 // DNA unwinding involved in replication // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005662 // DNA replication factor A complex // inferred from electronic annotation /// 0005662 // DNA replication factor A complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003690 // double-stranded DNA binding // not recorded /// 0003691 // double-stranded telomeric DNA binding // inferred from electronic annotation /// 0003691 // double-stranded telomeric DNA binding // not recorded /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046332 // SMAD binding // not recorded 1375683_at AI059933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059933 /DB_XREF=gi:3333710 /DB_XREF=UI-R-C1-kr-f-04-0-UI.s1 /CLONE=UI-R-C1-kr-f-04-0-UI /FEA=EST /CNT=9 /TID=Rn.11390.2 /TIER=Stack /STK=6 /UG=Rn.11390 /LL=171102 /UG_GENE=Cdc25a /UG_TITLE=cell division cycle 25A AI059933 Cell division cycle 25 homolog A (S. pombe) Cdc25a 171102 NM_133571 0000082 // G1/S transition of mitotic cell cycle // inferred from mutant phenotype /// 0000087 // M phase of mitotic cell cycle // inferred from electronic annotation /// 0006260 // DNA replication // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0004721 // phosphoprotein phosphatase activity // not recorded /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1375684_at BE111846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111846 /DB_XREF=gi:8503951 /DB_XREF=UI-R-BJ1-avz-d-11-0-UI.s1 /CLONE=UI-R-BJ1-avz-d-11-0-UI /FEA=EST /CNT=9 /TID=Rn.36634.2 /TIER=Stack /STK=6 /UG=Rn.36634 /LL=24591 /UG_GENE=Neu1 /UG_TITLE=Neuraminidase 1 BE111846 sialidase 1 (lysosomal sialidase) Neu1 24591 NM_031522 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043202 // lysosomal lumen // inferred from electronic annotation 0004308 // exo-alpha-sialidase activity // inferred from electronic annotation /// 0004308 // exo-alpha-sialidase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation 1375685_at BI282257 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282257 /DB_XREF=gi:14932846 /DB_XREF=UI-R-CU0s-cby-e-01-0-UI.s1 /CLONE=UI-R-CU0s-cby-e-01-0-UI /FEA=EST /CNT=9 /TID=Rn.16080.1 /TIER=Stack /STK=6 /UG=Rn.16080 /UG_TITLE=ESTs BI282257 cytoplasmic linker associated protein 1 Clasp1 304740 XM_001053715 /// XM_002727994 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0001578 // microtubule bundle formation // inferred from electronic annotation /// 0007026 // negative regulation of microtubule depolymerization // inferred from electronic annotation /// 0010458 // exit from mitosis // inferred from electronic annotation /// 0031111 // negative regulation of microtubule polymerization or depolymerization // inferred from electronic annotation 0000776 // kinetochore // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0030981 // cortical microtubule cytoskeleton // inferred from electronic annotation /// 0031592 // centrosomal corona // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0043515 // kinetochore binding // inferred from electronic annotation /// 0051010 // microtubule plus-end binding // inferred from electronic annotation 1375686_at AI706907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI706907 /DB_XREF=gi:4994807 /DB_XREF=UI-R-AA1-aac-g-01-0-UI.s1 /CLONE=UI-R-AA1-aac-g-01-0-UI /FEA=EST /CNT=9 /TID=Rn.14747.1 /TIER=Stack /STK=6 /UG=Rn.14747 /UG_TITLE=ESTs, Weakly similar to PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A (R.norvegicus) AI706907 peptidylprolyl isomerase (cyclophilin)-like 3 Ppil3 301432 NM_175707 0006397 // mRNA processing // inferred from electronic annotation /// 0006457 // protein folding // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005681 // spliceosomal complex // inferred from electronic annotation 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation 1375687_at BE097926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097926 /DB_XREF=gi:8488857 /DB_XREF=UI-R-BX0-ara-g-02-0-UI.s1 /CLONE=UI-R-BX0-ara-g-02-0-UI /FEA=EST /CNT=9 /TID=Rn.4069.1 /TIER=Stack /STK=6 /UG=Rn.4069 /UG_TITLE=ESTs BE097926 1375688_at BE106518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106518 /DB_XREF=gi:8498620 /DB_XREF=UI-R-BO1-aso-h-11-0-UI.s1 /CLONE=UI-R-BO1-aso-h-11-0-UI /FEA=EST /CNT=9 /TID=Rn.41369.1 /TIER=Stack /STK=6 /UG=Rn.41369 /UG_TITLE=ESTs, Weakly similar to HFH1 RAT HEPATOCYTE NUCLEAR FACTOR 3 FORKHEAD HOMOLOG 1 (R.norvegicus) BE106518 hypothetical protein LOC100361917 LOC100361917 100361917 XM_002729059 1375689_at BI300470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300470 /DB_XREF=gi:14976750 /DB_XREF=UI-R-CV2-cif-d-02-0-UI.s1 /CLONE=UI-R-CV2-cif-d-02-0-UI /FEA=EST /CNT=12 /TID=Rn.64112.1 /TIER=Stack /STK=6 /UG=Rn.64112 /UG_TITLE=ESTs BI300470 1375690_at AI138004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI138004 /DB_XREF=gi:3638781 /DB_XREF=UI-R-C2p-oi-c-05-0-UI.s1 /CLONE=UI-R-C2p-oi-c-05-0-UI /FEA=EST /CNT=11 /TID=Rn.38680.1 /TIER=Stack /STK=6 /UG=Rn.38680 /UG_TITLE=ESTs AI138004 1375691_at AI227913 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227913 /DB_XREF=gi:3811800 /DB_XREF=EST224608 /CLONE=RBRCN55 /FEA=EST /CNT=9 /TID=Rn.24275.1 /TIER=Stack /STK=6 /UG=Rn.24275 /UG_TITLE=ESTs AI227913 beta-1,4-N-acetyl-galactosaminyl transferase 4 B4galnt4 309105 NM_001107562 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0008376 // acetylgalactosaminyltransferase activity // not recorded /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1375692_at AI229025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229025 /DB_XREF=gi:3812912 /DB_XREF=EST225720 /CLONE=RBRDD11 /FEA=EST /CNT=9 /TID=Rn.20405.1 /TIER=Stack /STK=6 /UG=Rn.20405 /UG_TITLE=ESTs AI229025 1375693_at AI029772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029772 /DB_XREF=gi:4300868 /DB_XREF=UI-R-C0-iz-c-06-0-UI.s1 /CLONE=UI-R-C0-iz-c-06-0-UI /FEA=EST /CNT=9 /TID=Rn.17446.1 /TIER=Stack /STK=6 /UG=Rn.17446 /UG_TITLE=ESTs AI029772 1375694_at BF406688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406688 /DB_XREF=gi:11394663 /DB_XREF=UI-R-BJ2-bpo-a-02-0-UI.s1 /CLONE=UI-R-BJ2-bpo-a-02-0-UI /FEA=EST /CNT=9 /TID=Rn.39135.1 /TIER=Stack /STK=6 /UG=Rn.39135 /UG_TITLE=ESTs BF406688 Ras interacting protein 1 Rasip1 292912 NM_001106261 0007165 // signal transduction // inferred from electronic annotation 1375695_at AW535358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535358 /DB_XREF=gi:7177772 /DB_XREF=UI-R-BS0-aoe-c-04-0-UI.s1 /CLONE=UI-R-BS0-aoe-c-04-0-UI /FEA=EST /CNT=9 /TID=Rn.21737.1 /TIER=Stack /STK=6 /UG=Rn.21737 /UG_TITLE=ESTs, Weakly similar to S61169 hypothetical protein YDR374c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AW535358 YTH domain family, member 2 Ythdf2 313053 NM_001047099 1375696_at BF420426 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420426 /DB_XREF=gi:11408455 /DB_XREF=UI-R-BJ2-bpw-d-03-0-UI.s1 /CLONE=UI-R-BJ2-bpw-d-03-0-UI /FEA=EST /CNT=9 /TID=Rn.13293.1 /TIER=Stack /STK=6 /UG=Rn.13293 /UG_TITLE=ESTs, Weakly similar to INTERFERON-ALPHABETA RECEPTOR ALPHA CHAIN PRECURSOR (M.musculus) BF420426 interferon (alpha, beta and omega) receptor 1 Ifnar1 288264 NM_001105893 0007596 // blood coagulation // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0042110 // T cell activation // not recorded /// 0045351 // type I interferon biosynthetic process // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004904 // interferon receptor activity // not recorded /// 0005515 // protein binding // not recorded 1375697_at AI407016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407016 /DB_XREF=gi:4250520 /DB_XREF=EST235304 /CLONE=ROVDV12 /FEA=EST /CNT=9 /TID=Rn.21282.1 /TIER=Stack /STK=6 /UG=Rn.21282 /UG_TITLE=ESTs AI407016 malectin Mlec 304543 NM_001013983 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0030246 // carbohydrate binding // inferred from sequence or structural similarity 1375698_at BG372400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372400 /DB_XREF=gi:13268937 /DB_XREF=UI-R-CV1-bsc-c-10-0-UI.s1 /CLONE=UI-R-CV1-bsc-c-10-0-UI /FEA=EST /CNT=8 /TID=Rn.23254.1 /TIER=Stack /STK=6 /UG=Rn.23254 /UG_TITLE=ESTs BG372400 1375699_at BM389190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389190 /DB_XREF=gi:18189243 /DB_XREF=UI-R-DZ0-cko-c-06-0-UI.s1 /CLONE=UI-R-DZ0-cko-c-06-0-UI /FEA=EST /CNT=8 /TID=Rn.21793.1 /TIER=Stack /STK=6 /UG=Rn.21793 /UG_TITLE=ESTs BM389190 1375700_at BF284879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284879 /DB_XREF=gi:11215949 /DB_XREF=EST449470 /CLONE=RGIEX37 /FEA=EST /CNT=8 /TID=Rn.22462.1 /TIER=Stack /STK=6 /UG=Rn.22462 /UG_TITLE=ESTs, Weakly similar to KEAP_RAT KELCH-LIKE ECH-ASSOCIATED PROTEIN 1 (CYTOSOLIC INHIBITOR OF NRF2) (INRF2) (R.norvegicus) BF284879 kelch-like 22 (Drosophila) Klhl22 303792 NM_001107079 0051301 // cell division // not recorded /// 0051301 // cell division // inferred from sequence or structural similarity 0031463 // Cul3-RING ubiquitin ligase complex // not recorded /// 0031463 // Cul3-RING ubiquitin ligase complex // inferred from sequence or structural similarity 0005515 // protein binding // inferred from electronic annotation 1375701_at BF400575 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400575 /DB_XREF=gi:11388550 /DB_XREF=UI-R-CA0-bhd-a-05-0-UI.s1 /CLONE=UI-R-CA0-bhd-a-05-0-UI /FEA=EST /CNT=8 /TID=Rn.63360.1 /TIER=Stack /STK=6 /UG=Rn.63360 /UG_TITLE=ESTs BF400575 methyltransferase 10 domain containing Mett10d 360568 XR_085570 /// XR_085968 0008168 // methyltransferase activity // inferred from electronic annotation 1375702_at BF414089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414089 /DB_XREF=gi:11402078 /DB_XREF=UI-R-BJ2-bom-c-05-0-UI.s1 /CLONE=UI-R-BJ2-bom-c-05-0-UI /FEA=EST /CNT=8 /TID=Rn.10963.3 /TIER=Stack /STK=6 /UG=Rn.10963 /LL=114559 /UG_GENE=Pak3bp /UG_TITLE=PAK-interacting exchange factor beta BF414089 Rho guanine nucleotide exchange factor (GEF7) Arhgef7 114559 NM_001113521 /// NM_001113522 /// NM_053740 0006915 // apoptosis // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from direct assay /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from sequence or structural similarity /// 0043615 // astrocyte cell migration // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005925 // focal adhesion // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // traceable author statement /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1375703_at BE117891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117891 /DB_XREF=gi:8509996 /DB_XREF=UI-R-BS1-azm-b-12-0-UI.s1 /CLONE=UI-R-BS1-azm-b-12-0-UI /FEA=EST /CNT=8 /TID=Rn.34968.1 /TIER=Stack /STK=6 /UG=Rn.34968 /UG_TITLE=ESTs BE117891 myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila) Mll5 311968 XM_001059700 /// XM_231287 0002446 // neutrophil mediated immunity // inferred from electronic annotation /// 0006306 // DNA methylation // inferred from electronic annotation /// 0016571 // histone methylation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0042119 // neutrophil activation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0048384 // retinoic acid receptor signaling pathway // inferred from electronic annotation 0070688 // MLL5-L complex // inferred from electronic annotation 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0042800 // histone methyltransferase activity (H3-K4 specific) // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375704_at AA817860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817860 /DB_XREF=gi:4198384 /DB_XREF=UI-R-A0-ae-h-04-0-UI.s1 /CLONE=UI-R-A0-ae-h-04-0-UI /FEA=EST /CNT=8 /TID=Rn.22431.1 /TIER=Stack /STK=6 /UG=Rn.22431 /UG_TITLE=ESTs AA817860 1375705_at AI103622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103622 /DB_XREF=gi:3708149 /DB_XREF=EST212911 /CLONE=REMCE35 /FEA=EST /CNT=8 /TID=Rn.7106.2 /TIER=Stack /STK=6 /UG=Rn.7106 /LL=24400 /UG_GENE=Gnb1 /UG_TITLE=Guanine nucleotide-binding protein beta 1 AI103622 1375706_at AI230273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230273 /DB_XREF=gi:3814160 /DB_XREF=EST226968 /CLONE=REMCU45 /FEA=EST /CNT=8 /TID=Rn.16503.1 /TIER=Stack /STK=6 /UG=Rn.16503 /UG_TITLE=ESTs AI230273 rCG54286-like LOC100361913 100361913 XM_002728724 1375707_at AA817993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817993 /DB_XREF=gi:4198516 /DB_XREF=UI-R-A0-ah-b-02-0-UI.s1 /CLONE=UI-R-A0-ah-b-02-0-UI /FEA=EST /CNT=8 /TID=Rn.22502.1 /TIER=Stack /STK=6 /UG=Rn.22502 /UG_TITLE=ESTs, Moderately similar to A53798 58K membrane-associated protein - rat (R.norvegicus) AA817993 1375708_at BF392901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392901 /DB_XREF=gi:11377760 /DB_XREF=UI-R-CA0-bfq-e-10-0-UI.s1 /CLONE=UI-R-CA0-bfq-e-10-0-UI /FEA=EST /CNT=8 /TID=Rn.53800.1 /TIER=Stack /STK=6 /UG=Rn.53800 /UG_TITLE=ESTs BF392901 Collagen, type XXVII, alpha 1 Col27a1 298101 NM_198747 0007155 // cell adhesion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen // inferred from electronic annotation /// 0005583 // fibrillar collagen // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // inferred from electronic annotation 1375709_at BI275966 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275966 /DB_XREF=gi:14920410 /DB_XREF=UI-R-CX0-bxi-e-10-0-UI.s1 /CLONE=UI-R-CX0-bxi-e-10-0-UI /FEA=EST /CNT=8 /TID=Rn.24935.1 /TIER=Stack /STK=6 /UG=Rn.24935 /UG_TITLE=ESTs, Weakly similar to T14106 probable GTPase-activating protein SPA-1 - rat (R.norvegicus) BI275966 signal-induced proliferation-associated 1 Sipa1 361710 NM_001004089 0042631 // cellular response to water deprivation // inferred from direct assay /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction 1375710_at AI602428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602428 /DB_XREF=gi:4611589 /DB_XREF=UI-R-AG0-wz-f-07-0-UI.s1 /CLONE=UI-R-AG0-wz-f-07-0-UI /FEA=EST /CNT=8 /TID=Rn.3184.2 /TIER=Stack /STK=6 /UG=Rn.3184 /UG_TITLE=ESTs, Weakly similar to CAG7 RAT ALPHA-N-ACETYLGALACTOSAMINIDE ALPHA-2,6-SIALYLTRANSFERASE (R.norvegicus) AI602428 Alpha-2,6-sialyltransferase ST6GalNAc IV siat7D 407764 XM_001080040 0006486 // protein glycosylation // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation 0008373 // sialyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1375711_at BG373688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373688 /DB_XREF=gi:13270225 /DB_XREF=UI-R-CV1-bsg-g-06-0-UI.s1 /CLONE=UI-R-CV1-bsg-g-06-0-UI /FEA=EST /CNT=8 /TID=Rn.20542.1 /TIER=Stack /STK=6 /UG=Rn.20542 /UG_TITLE=ESTs BG373688 1375712_at AI600090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600090 /DB_XREF=gi:4609138 /DB_XREF=EST251793 /CLONE=REMDR15 /FEA=EST /CNT=8 /TID=Rn.22227.2 /TIER=Stack /STK=6 /UG=Rn.22227 /UG_TITLE=ESTs, Weakly similar to B0513.2b.p (Caenorhabditis elegans) (C.elegans) AI600090 THO complex 7 homolog (Drosophila) Thoc7 305714 XM_001069423 /// XM_223828 0006406 // mRNA export from nucleus // not recorded /// 0046784 // intronless viral mRNA export from host nucleus // not recorded 0000346 // transcription export complex // not recorded /// 0000347 // THO complex // not recorded /// 0000445 // THO complex part of transcription export complex // not recorded /// 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1375713_at AI599432 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599432 /DB_XREF=gi:4608480 /DB_XREF=EST251135 /CLONE=RBRDY16 /FEA=EST /CNT=8 /TID=Rn.22422.2 /TIER=Stack /STK=6 /UG=Rn.22422 /LL=79225 /UG_GENE=Hes5 /UG_TITLE=hairy and enhancer of split 5 (Drosophila) AI599432 Hairy and enhancer of split 5 (Drosophila) Hes5 79225 NM_024383 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0007224 // smoothened signaling pathway // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016481 // negative regulation of transcription // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from expression pattern /// 0042491 // auditory receptor cell differentiation // inferred from electronic annotation /// 0042491 // auditory receptor cell differentiation // not recorded /// 0042668 // auditory receptor cell fate determination // inferred from electronic annotation /// 0042668 // auditory receptor cell fate determination // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from direct assay /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded /// 0050767 // regulation of neurogenesis // inferred from electronic annotation /// 0050767 // regulation of neurogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation 1375714_at BI289124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289124 /DB_XREF=gi:14946375 /DB_XREF=UI-R-DK0-cfe-g-06-0-UI.s1 /CLONE=UI-R-DK0-cfe-g-06-0-UI /FEA=EST /CNT=8 /TID=Rn.23246.1 /TIER=Stack /STK=6 /UG=Rn.23246 /UG_TITLE=ESTs, Weakly similar to T31434 densin-180 - rat (R.norvegicus) BI289124 similar to Erbb2 interacting protein isoform 2 RGD1562952 365661 XR_085744 /// XR_086162 1375715_at BE112777 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112777 /DB_XREF=gi:8504887 /DB_XREF=UI-R-BJ1-avo-g-03-0-UI.s1 /CLONE=UI-R-BJ1-avo-g-03-0-UI /FEA=EST /CNT=8 /TID=Rn.23942.1 /TIER=Stack /STK=6 /UG=Rn.23942 /UG_TITLE=ESTs, Weakly similar to GCN2 eIF2alpha kinase (M.musculus) BE112777 RWD domain containing 1 Rwdd1 259218 NM_147146 0005515 // protein binding // inferred from electronic annotation 1375716_at AI602715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602715 /DB_XREF=gi:4611876 /DB_XREF=UI-R-AE0-xk-b-12-0-UI.s1 /CLONE=UI-R-AE0-xk-b-12-0-UI /FEA=EST /CNT=8 /TID=Rn.23508.1 /TIER=Stack /STK=6 /UG=Rn.23508 /UG_TITLE=ESTs, Moderately similar to A49947 interferon gamma receptor beta subunit - mouse (M.musculus) AI602715 interferon gamma receptor 2 Ifngr2 360697 NM_001108313 0007596 // blood coagulation // inferred from electronic annotation 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1375717_at AI547966 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547966 /DB_XREF=gi:4465454 /DB_XREF=UI-R-C3-th-a-09-0-UI.s1 /CLONE=UI-R-C3-th-a-09-0-UI /FEA=EST /CNT=8 /TID=Rn.11495.2 /TIER=Stack /STK=6 /UG=Rn.11495 /LL=29466 /UG_GENE=Aes /UG_TITLE=amino-terminal enhancer of split AI547966 Amino-terminal enhancer of split Aes 29466 NM_019220 0001501 // skeletal system development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0031668 // cellular response to extracellular stimulus // not recorded /// 0032091 // negative regulation of protein binding // not recorded /// 0040008 // regulation of growth // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0060761 // negative regulation of response to cytokine stimulus // not recorded /// 0070555 // response to interleukin-1 // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // not recorded 1375718_at BF546105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546105 /DB_XREF=gi:11637212 /DB_XREF=UI-R-C2p-rs-d-08-0-UI.r1 /CLONE=UI-R-C2p-rs-d-08-0-UI /FEA=EST /CNT=8 /TID=Rn.35274.1 /TIER=Stack /STK=6 /UG=Rn.35274 /UG_TITLE=ESTs BF546105 Bm403207 LOC498525 498525 1375719_s_at BG381748 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381748 /DB_XREF=gi:13306220 /DB_XREF=UI-R-CT0-buf-a-07-0-UI.s1 /CLONE=UI-R-CT0-buf-a-07-0-UI /FEA=EST /CNT=8 /TID=Rn.41130.1 /TIER=Stack /STK=6 /UG=Rn.41130 /UG_TITLE=ESTs, Weakly similar to CAD2_RAT NEURAL-CADHERIN PRECURSOR (N-CADHERIN) (CADHERIN-2) (R.norvegicus) BG381748 cadherin 13 Cdh13 192248 NM_138889 0000278 // mitotic cell cycle // inferred from expression pattern /// 0001558 // regulation of cell growth // inferred from mutant phenotype /// 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0001954 // positive regulation of cell-matrix adhesion // inferred from electronic annotation /// 0001954 // positive regulation of cell-matrix adhesion // not recorded /// 0002040 // sprouting angiogenesis // inferred from electronic annotation /// 0002040 // sprouting angiogenesis // not recorded /// 0007155 // cell adhesion // non-traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // not recorded /// 0007162 // negative regulation of cell adhesion // inferred from electronic annotation /// 0007162 // negative regulation of cell adhesion // not recorded /// 0007266 // Rho protein signal transduction // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0016337 // cell-cell adhesion // traceable author statement /// 0016339 // calcium-dependent cell-cell adhesion // inferred from electronic annotation /// 0016339 // calcium-dependent cell-cell adhesion // not recorded /// 0016601 // Rac protein signal transduction // inferred from electronic annotation /// 0016601 // Rac protein signal transduction // not recorded /// 0030032 // lamellipodium assembly // inferred from electronic annotation /// 0030032 // lamellipodium assembly // not recorded /// 0030100 // regulation of endocytosis // inferred from electronic annotation /// 0030100 // regulation of endocytosis // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0042058 // regulation of epidermal growth factor receptor signaling pathway // inferred from electronic annotation /// 0042058 // regulation of epidermal growth factor receptor signaling pathway // not recorded /// 0043542 // endothelial cell migration // inferred from electronic annotation /// 0043542 // endothelial cell migration // not recorded /// 0043616 // keratinocyte proliferation // inferred from electronic annotation /// 0043616 // keratinocyte proliferation // not recorded /// 0045885 // positive regulation of survival gene product expression // inferred from electronic annotation /// 0045885 // positive regulation of survival gene product expression // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // not recorded /// 0050850 // positive regulation of calcium-mediated signaling // inferred from electronic annotation /// 0050850 // positive regulation of calcium-mediated signaling // not recorded /// 0050927 // positive regulation of positive chemotaxis // inferred from electronic annotation /// 0050927 // positive regulation of positive chemotaxis // not recorded /// 0051668 // localization within membrane // inferred from electronic annotation /// 0051668 // localization within membrane // not recorded /// 0055096 // low-density lipoprotein mediated signaling // inferred from electronic annotation /// 0055096 // low-density lipoprotein mediated signaling // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030169 // low-density lipoprotein binding // inferred from electronic annotation /// 0030169 // low-density lipoprotein binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0045296 // cadherin binding // inferred from electronic annotation /// 0045296 // cadherin binding // not recorded /// 0055100 // adiponectin binding // inferred from electronic annotation /// 0055100 // adiponectin binding // not recorded 1375720_at AI171785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171785 /DB_XREF=gi:4134662 /DB_XREF=EST217767 /CLONE=RMUBQ68 /FEA=EST /CNT=10 /TID=Rn.22277.1 /TIER=Stack /STK=6 /UG=Rn.22277 /UG_TITLE=ESTs, Highly similar to GBR1_RAT GAMMA-AMINOBUTYRIC ACID TYPE B RECEPTOR, SUBUNIT 1 PRECURSOR (GABA-B RECEPTOR 1) (GABA-B-R1) (GB1) (R.norvegicus) AI171785 gamma-aminobutyric acid (GABA) B receptor 1 Gabbr1 81657 NM_031028 0001649 // osteoblast differentiation // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007194 // negative regulation of adenylate cyclase activity // inferred from direct assay /// 0007194 // negative regulation of adenylate cyclase activity // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0014048 // regulation of glutamate secretion // inferred from direct assay /// 0014053 // negative regulation of gamma-aminobutyric acid secretion // inferred from mutant phenotype /// 0030817 // regulation of cAMP biosynthetic process // inferred from direct assay /// 0032811 // negative regulation of epinephrine secretion // inferred from mutant phenotype /// 0033602 // negative regulation of dopamine secretion // inferred from direct assay /// 0035094 // response to nicotine // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0050805 // negative regulation of synaptic transmission // inferred from direct assay /// 0060124 // positive regulation of growth hormone secretion // inferred from mutant phenotype 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030673 // axolemma // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004965 // GABA-B receptor activity // inferred from direct assay /// 0004965 // GABA-B receptor activity // inferred from mutant phenotype /// 0004965 // GABA-B receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction 1375721_at BF408438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408438 /DB_XREF=gi:11396413 /DB_XREF=UI-R-BJ2-brc-g-02-0-UI.s1 /CLONE=UI-R-BJ2-brc-g-02-0-UI /FEA=EST /CNT=9 /TID=Rn.17048.1 /TIER=Stack /STK=6 /UG=Rn.17048 /UG_TITLE=ESTs BF408438 1375722_at AI230745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230745 /DB_XREF=gi:3814632 /DB_XREF=EST227440 /CLONE=REMDA70 /FEA=EST /CNT=9 /TID=Rn.33401.1 /TIER=Stack /STK=6 /UG=Rn.33401 /UG_TITLE=ESTs, Highly similar to I58377 LTG19 (H.sapiens) AI230745 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1 Mllt1 301119 NM_001106876 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1375723_at AI385171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385171 /DB_XREF=gi:4197953 /DB_XREF=UI-R-E0-ci-f-01-0-UI.s1 /CLONE=UI-R-E0-ci-f-01-0-UI /FEA=EST /CNT=8 /TID=Rn.34293.1 /TIER=Stack /STK=6 /UG=Rn.34293 /UG_TITLE=ESTs AI385171 1375724_at BE108162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108162 /DB_XREF=gi:8500307 /DB_XREF=UI-R-BS1-ayw-f-01-0-UI.s1 /CLONE=UI-R-BS1-ayw-f-01-0-UI /FEA=EST /CNT=8 /TID=Rn.27394.1 /TIER=Stack /STK=6 /UG=Rn.27394 /UG_TITLE=ESTs BE108162 glucocorticoid induced transcript 1 /// hypothetical LOC296884 Glcci1 /// LOC296884 296884 /// 500026 NM_001177442 /// XM_001055704 /// XM_002729282 /// XM_002729283 /// XM_575380 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded 1375725_at AI577188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577188 /DB_XREF=gi:4561564 /DB_XREF=UI-R-AD0-wd-f-10-0-UI.s1 /CLONE=UI-R-AD0-wd-f-10-0-UI /FEA=EST /CNT=8 /TID=Rn.39129.1 /TIER=Stack /STK=6 /UG=Rn.39129 /UG_TITLE=ESTs, Weakly similar to SC65 synaptonemal complex protein (Rattus norvegicus) (R.norvegicus) AI577188 1375726_at BI284480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284480 /DB_XREF=gi:14937200 /DB_XREF=UI-R-CX0s-ccr-e-10-0-UI.s1 /CLONE=UI-R-CX0s-ccr-e-10-0-UI /FEA=EST /CNT=8 /TID=Rn.26906.1 /TIER=Stack /STK=6 /UG=Rn.26906 /UG_TITLE=ESTs, Moderately similar to JE0325 LIM protein (H.sapiens) BI284480 LIM domain 7 Lmo7 361084 NM_001001515 0016337 // cell-cell adhesion // inferred from expression pattern 0005913 // cell-cell adherens junction // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042805 // actinin binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1375727_at AI412474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412474 /DB_XREF=gi:4255978 /DB_XREF=EST240773 /CLONE=RBRDP03 /FEA=EST /CNT=8 /TID=Rn.38930.2 /TIER=Stack /STK=6 /UG=Rn.38930 /UG_TITLE=ESTs, Moderately similar to TNP1_HUMAN TUMOR NECROSIS FACTOR, ALPHA-INDUCED PROTEIN 1, ENDOTHELIAL (H.sapiens) AI412474 Potassium channel tetramerisation domain containing 13 Kctd13 293497 NM_198736 0006260 // DNA replication // inferred from direct assay /// 0006281 // DNA repair // traceable author statement /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0030036 // actin cytoskeleton organization // traceable author statement /// 0035024 // negative regulation of Rho protein signal transduction // not recorded /// 0043149 // stress fiber assembly // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0045449 // regulation of transcription // traceable author statement /// 0045740 // positive regulation of DNA replication // inferred from direct assay /// 0051260 // protein homooligomerization // traceable author statement /// 0051291 // protein heterooligomerization // traceable author statement 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031463 // Cul3-RING ubiquitin ligase complex // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0017049 // GTP-Rho binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1375728_at AI511102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511102 /DB_XREF=gi:4416801 /DB_XREF=UI-R-C2p-oj-d-06-0-UI.s1 /CLONE=UI-R-C2p-oj-d-06-0-UI /FEA=EST /CNT=8 /TID=Rn.34634.1 /TIER=Stack /STK=6 /UG=Rn.34634 /UG_TITLE=ESTs AI511102 1375729_at BF411904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411904 /DB_XREF=gi:11399933 /DB_XREF=UI-R-BT1-bmx-d-06-0-UI.s1 /CLONE=UI-R-BT1-bmx-d-06-0-UI /FEA=EST /CNT=7 /TID=Rn.41895.1 /TIER=Stack /STK=6 /UG=Rn.41895 /UG_TITLE=ESTs BF411904 Eph receptor A4 Epha4 316539 NM_001162411 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007628 // adult walking behavior // not recorded 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005003 // ephrin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046875 // ephrin receptor binding // inferred from direct assay 1375730_at BF404626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404626 /DB_XREF=gi:11392601 /DB_XREF=UI-R-CA1-bih-g-03-0-UI.s1 /CLONE=UI-R-CA1-bih-g-03-0-UI /FEA=EST /CNT=7 /TID=Rn.62464.1 /TIER=Stack /STK=6 /UG=Rn.62464 /UG_TITLE=ESTs BF404626 integrin alpha FG-GAP repeat containing 2 Itfg2 362441 NM_001108648 1375731_at BI296637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296637 /DB_XREF=gi:14961259 /DB_XREF=UI-R-CV2-cgt-e-10-0-UI.s1 /CLONE=UI-R-CV2-cgt-e-10-0-UI /FEA=EST /CNT=7 /TID=Rn.66289.1 /TIER=Stack /STK=6 /UG=Rn.66289 /UG_TITLE=ESTs BI296637 1375732_at BE109509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109509 /DB_XREF=gi:8501614 /DB_XREF=UI-R-BJ1-avp-a-05-0-UI.s1 /CLONE=UI-R-BJ1-avp-a-05-0-UI /FEA=EST /CNT=7 /TID=Rn.51129.1 /TIER=Stack /STK=6 /UG=Rn.51129 /UG_TITLE=ESTs BE109509 1375733_at AW520755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520755 /DB_XREF=gi:7163133 /DB_XREF=UI-R-BJ0p-agh-b-06-0-UI.s1 /CLONE=UI-R-BJ0p-agh-b-06-0-UI /FEA=EST /CNT=7 /TID=Rn.45062.1 /TIER=Stack /STK=6 /UG=Rn.45062 /UG_TITLE=ESTs AW520755 1375734_at BF419022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419022 /DB_XREF=gi:11407011 /DB_XREF=UI-R-BJ2-bqm-f-07-0-UI.s1 /CLONE=UI-R-BJ2-bqm-f-07-0-UI /FEA=EST /CNT=7 /TID=Rn.23548.1 /TIER=Stack /STK=6 /UG=Rn.23548 /UG_TITLE=ESTs BF419022 Family with sequence similarity 65, member A Fam65a 291974 XM_001075785 /// XM_214666 0005488 // binding // inferred from electronic annotation 1375735_at BF391294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391294 /DB_XREF=gi:11376146 /DB_XREF=UI-R-CA1-bcv-f-12-0-UI.s1 /CLONE=UI-R-CA1-bcv-f-12-0-UI /FEA=EST /CNT=7 /TID=Rn.41745.1 /TIER=Stack /STK=6 /UG=Rn.41745 /UG_TITLE=ESTs BF391294 1375736_at AW252835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252835 /DB_XREF=gi:6596426 /DB_XREF=UI-R-BJ0-ael-c-07-0-UI.s1 /CLONE=UI-R-BJ0-ael-c-07-0-UI /FEA=EST /CNT=7 /TID=Rn.41113.1 /TIER=Stack /STK=6 /UG=Rn.41113 /UG_TITLE=ESTs AW252835 Ribonuclease type III, nuclear Rnasen 310159 NM_001107655 0006364 // rRNA processing // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0016075 // rRNA catabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0004525 // ribonuclease III activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375737_at AI385361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385361 /DB_XREF=gi:4198143 /DB_XREF=UI-R-C2-mu-e-08-0-UI.s2 /CLONE=UI-R-C2-mu-e-08-0-UI /FEA=EST /CNT=7 /TID=Rn.22616.2 /TIER=Stack /STK=6 /UG=Rn.22616 /LL=89818 /UG_GENE=Vamp5 /UG_TITLE=vesicle-associated membrane protein 5 AI385361 Vesicle-associated membrane protein 5 Vamp5 89818 NM_053555 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1375738_at BF404416 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404416 /DB_XREF=gi:11392391 /DB_XREF=UI-R-CA1-bif-a-06-0-UI.s1 /CLONE=UI-R-CA1-bif-a-06-0-UI /FEA=EST /CNT=7 /TID=Rn.23342.1 /TIER=Stack /STK=6 /UG=Rn.23342 /UG_TITLE=ESTs BF404416 Shadow of prion protein homolog (zebrafish) Sprn 541462 NM_001031845 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 1375739_at BF395171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395171 /DB_XREF=gi:11380136 /DB_XREF=UI-R-CM0-bjj-f-11-0-UI.s1 /CLONE=UI-R-CM0-bjj-f-11-0-UI /FEA=EST /CNT=7 /TID=Rn.4145.2 /TIER=Stack /STK=6 /UG=Rn.4145 /UG_TITLE=ESTs, Weakly similar to EPIDERMAL GROWTH FACTOR RECEPTOR SUBSTRATE SUBSTRATE 15 (M.musculus) BF395171 EH-domain containing 4 Ehd4 192204 NM_139324 0006907 // pinocytosis // inferred from mutant phenotype /// 0030100 // regulation of endocytosis // inferred from mutant phenotype 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded 0003924 // GTPase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1375740_at BI296565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296565 /DB_XREF=gi:14961114 /DB_XREF=UI-R-CV2-cgs-f-10-0-UI.s1 /CLONE=UI-R-CV2-cgs-f-10-0-UI /FEA=EST /CNT=7 /TID=Rn.66309.1 /TIER=Stack /STK=6 /UG=Rn.66309 /UG_TITLE=ESTs BI296565 1375741_at AI227953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227953 /DB_XREF=gi:3811840 /DB_XREF=EST224648 /CLONE=RBRCO03 /FEA=EST /CNT=7 /TID=Rn.23102.1 /TIER=Stack /STK=6 /UG=Rn.23102 /UG_TITLE=ESTs, Weakly similar to K6A1_RAT Ribosomal protein S6 kinase alpha 1 (S6K-alpha 1) (90 kDa ribosomal protein S6 kinase 1) (p90-RSK 1) (Ribosomal S6 kinase 1) (RSK-1) (pp90RSK1) (R.norvegicus) AI227953 coiled-coil domain containing 88B Ccdc88b 361715 NM_001108517 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1375742_at AW434257 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434257 /DB_XREF=gi:6965564 /DB_XREF=UI-R-BJ0p-afw-b-01-0-UI.s1 /CLONE=UI-R-BJ0p-afw-b-01-0-UI /FEA=EST /CNT=7 /TID=Rn.40559.1 /TIER=Stack /STK=6 /UG=Rn.40559 /UG_TITLE=ESTs AW434257 Vasohibin 2 Vash2 498309 NM_001109082 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0045766 // positive regulation of angiogenesis // not recorded 0005737 // cytoplasm // not recorded 1375743_at BE102400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102400 /DB_XREF=gi:8494499 /DB_XREF=UI-R-BT1-aqm-b-05-0-UI.s1 /CLONE=UI-R-BT1-aqm-b-05-0-UI /FEA=EST /CNT=7 /TID=Rn.44706.1 /TIER=Stack /STK=6 /UG=Rn.44706 /UG_TITLE=ESTs, Weakly similar to TALIN (M.musculus) BE102400 talin 2 Tln2 315776 XM_001056646 /// XM_236367 0007016 // cytoskeletal anchoring at plasma membrane // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0045202 // synapse // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005158 // insulin receptor binding // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375744_at BE105894 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105894 /DB_XREF=gi:8497996 /DB_XREF=UI-R-BO1-asj-d-11-0-UI.s1 /CLONE=UI-R-BO1-asj-d-11-0-UI /FEA=EST /CNT=7 /TID=Rn.50822.1 /TIER=Stack /STK=6 /UG=Rn.50822 /UG_TITLE=ESTs, Highly similar to FXD1 MOUSE FORKHEAD BOX PROTEIN D1 (M.musculus) BE105894 Forkhead box D1 Foxd1 171299 XM_001057782 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001822 // kidney development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0010628 // positive regulation of gene expression // not recorded /// 0010628 // positive regulation of gene expression // inferred from sequence or structural similarity /// 0030513 // positive regulation of BMP signaling pathway // not recorded /// 0030513 // positive regulation of BMP signaling pathway // inferred from sequence or structural similarity /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0032582 // negative regulation of gene-specific transcription // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060678 // dichotomous subdivision of terminal units involved in ureteric bud branching // not recorded /// 0060678 // dichotomous subdivision of terminal units involved in ureteric bud branching // inferred from sequence or structural similarity /// 0072076 // nephrogenic mesenchyme development // not recorded /// 0072210 // metanephric nephron development // not recorded /// 0072213 // metanephric capsule development // not recorded /// 0072213 // metanephric capsule development // inferred from sequence or structural similarity /// 0072267 // metanephric capsule specification // not recorded /// 0072267 // metanephric capsule specification // inferred from sequence or structural similarity /// 0072268 // pattern specification involved in metanephros development // not recorded /// 0090184 // positive regulation of kidney development // not recorded /// 0090184 // positive regulation of kidney development // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008301 // DNA bending activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1375745_at BE117491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117491 /DB_XREF=gi:8509596 /DB_XREF=UI-R-BS1-ayo-d-12-0-UI.s1 /CLONE=UI-R-BS1-ayo-d-12-0-UI /FEA=EST /CNT=7 /TID=Rn.40367.1 /TIER=Stack /STK=6 /UG=Rn.40367 /UG_TITLE=ESTs BE117491 1375746_at AW524548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524548 /DB_XREF=gi:7166933 /DB_XREF=UI-R-BO0-ahz-f-12-0-UI.s1 /CLONE=UI-R-BO0-ahz-f-12-0-UI /FEA=EST /CNT=7 /TID=Rn.19021.1 /TIER=Stack /STK=6 /UG=Rn.19021 /UG_TITLE=ESTs AW524548 ankyrin repeat domain 13C Ankrd13c 685374 NM_001191570 /// XM_001062165 /// XM_002726058 /// XM_002729125 0005783 // endoplasmic reticulum // not recorded 1375747_at BF390818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390818 /DB_XREF=gi:11375665 /DB_XREF=UI-R-CA1-bcp-g-09-0-UI.s1 /CLONE=UI-R-CA1-bcp-g-09-0-UI /FEA=EST /CNT=7 /TID=Rn.64395.1 /TIER=Stack /STK=6 /UG=Rn.64395 /UG_TITLE=ESTs BF390818 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 Acap2 619382 NM_001034006 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375748_at BE101954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101954 /DB_XREF=gi:8494052 /DB_XREF=UI-R-BT1-aqi-e-06-0-UI.s1 /CLONE=UI-R-BT1-aqi-e-06-0-UI /FEA=EST /CNT=7 /TID=Rn.53942.1 /TIER=Stack /STK=6 /UG=Rn.53942 /UG_TITLE=ESTs, Weakly similar to ROK_HUMAN HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN K (R.norvegicus) BE101954 1375749_at BF404853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404853 /DB_XREF=gi:11392828 /DB_XREF=UI-R-CA1-bic-e-01-0-UI.s1 /CLONE=UI-R-CA1-bic-e-01-0-UI /FEA=EST /CNT=7 /TID=Rn.61488.1 /TIER=Stack /STK=6 /UG=Rn.61488 /UG_TITLE=ESTs BF404853 SEC3-like 1 (S. cerevisiae) Sec3l1 305287 NM_001024770 1375750_at BE099067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099067 /DB_XREF=gi:8490943 /DB_XREF=UI-R-BJ1-atf-h-12-0-UI.s1 /CLONE=UI-R-BJ1-atf-h-12-0-UI /FEA=EST /CNT=7 /TID=Rn.12251.1 /TIER=Stack /STK=6 /UG=Rn.12251 /UG_TITLE=ESTs, Moderately similar to sox-4 protein (M.musculus) BE099067 SRY (sex determining region Y)-box 12 Sox12 689988 NM_001168650 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1375751_at BE098727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098727 /DB_XREF=gi:8490595 /DB_XREF=UI-R-BJ1-atd-c-03-0-UI.s1 /CLONE=UI-R-BJ1-atd-c-03-0-UI /FEA=EST /CNT=7 /TID=Rn.41422.1 /TIER=Stack /STK=6 /UG=Rn.41422 /UG_TITLE=ESTs, Weakly similar to SH3 domain binding protein (R.norvegicus) BE098727 1375752_at AI577874 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577874 /DB_XREF=gi:4562250 /DB_XREF=UI-R-AB0-vw-f-12-0-UI.s1 /CLONE=UI-R-AB0-vw-f-12-0-UI /FEA=EST /CNT=7 /TID=Rn.41396.1 /TIER=Stack /STK=6 /UG=Rn.41396 /UG_TITLE=ESTs AI577874 Blood vessel epicardial substance Bves 365603 NM_001077590 0001921 // positive regulation of receptor recycling // inferred from sequence or structural similarity /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from sequence or structural similarity /// 0016192 // vesicle-mediated transport // inferred from sequence or structural similarity /// 0032314 // regulation of Rac GTPase activity // inferred from sequence or structural similarity /// 0034446 // substrate adhesion-dependent cell spreading // inferred from sequence or structural similarity /// 0040017 // positive regulation of locomotion // inferred from sequence or structural similarity /// 0043088 // regulation of Cdc42 GTPase activity // inferred from sequence or structural similarity /// 0090136 // epithelial cell-cell adhesion // inferred from sequence or structural similarity 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from sequence or structural similarity /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // inferred from sequence or structural similarity /// 0016328 // lateral plasma membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005198 // structural molecule activity // inferred from sequence or structural similarity 1375753_at AW251612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251612 /DB_XREF=gi:6595203 /DB_XREF=UI-R-BJ0-adb-f-05-0-UI.s1 /CLONE=UI-R-BJ0-adb-f-05-0-UI /FEA=EST /CNT=7 /TID=Rn.44693.1 /TIER=Stack /STK=6 /UG=Rn.44693 /UG_TITLE=ESTs, Weakly similar to YSHUT threonine--tRNA ligase (H.sapiens) AW251612 threonyl-tRNA synthetase 2, mitochondrial (putative) Tars2 310672 NM_001014040 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006435 // threonyl-tRNA aminoacylation // inferred from electronic annotation /// 0043039 // tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004829 // threonine-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016876 // ligase activity, forming aminoacyl-tRNA and related compounds // inferred from electronic annotation 1375754_at AA850890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850890 /DB_XREF=gi:2938430 /DB_XREF=EST193658 /CLONE=ROVAO06 /FEA=EST /CNT=7 /TID=Rn.22868.1 /TIER=Stack /STK=6 /UG=Rn.22868 /UG_TITLE=ESTs, Weakly similar to Uncharacterized protein family UPF0029 (Caenorhabditis elegans) (C.elegans) AA850890 imprinted and ancient Impact 497198 NM_001012235 0006417 // regulation of translation // inferred from electronic annotation 1375755_at BE098673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098673 /DB_XREF=gi:8490539 /DB_XREF=UI-R-BJ1-atb-f-02-0-UI.s1 /CLONE=UI-R-BJ1-atb-f-02-0-UI /FEA=EST /CNT=7 /TID=Rn.22321.2 /TIER=Stack /STK=6 /UG=Rn.22321 /LL=24390 /UG_GENE=B4galt1 /UG_TITLE=Glycoprotein-4-beta-galactosyltransferase 2 BE098673 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 B4galt1 24390 NM_053287 0002064 // epithelial cell development // inferred from electronic annotation /// 0002064 // epithelial cell development // not recorded /// 0002526 // acute inflammatory response // inferred from electronic annotation /// 0002526 // acute inflammatory response // not recorded /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005989 // lactose biosynthetic process // inferred from electronic annotation /// 0005989 // lactose biosynthetic process // not recorded /// 0006012 // galactose metabolic process // inferred from electronic annotation /// 0006012 // galactose metabolic process // not recorded /// 0006496 // protein amino acid terminal N-glycosylation // inferred from electronic annotation /// 0006496 // protein amino acid terminal N-glycosylation // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation /// 0007339 // binding of sperm to zona pellucida // not recorded /// 0007341 // penetration of zona pellucida // inferred from electronic annotation /// 0007341 // penetration of zona pellucida // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009101 // glycoprotein biosynthetic process // inferred from electronic annotation /// 0009101 // glycoprotein biosynthetic process // not recorded /// 0009312 // oligosaccharide biosynthetic process // not recorded /// 0009312 // oligosaccharide biosynthetic process // traceable author statement /// 0009312 // oligosaccharide biosynthetic process // inferred from electronic annotation /// 0009611 // response to wounding // inferred from expression pattern /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0030879 // mammary gland development // not recorded /// 0042060 // wound healing // not recorded /// 0042060 // wound healing // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0045136 // development of secondary sexual characteristics // inferred from electronic annotation /// 0045136 // development of secondary sexual characteristics // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // not recorded /// 0050900 // leukocyte migration // inferred from electronic annotation /// 0050900 // leukocyte migration // not recorded /// 0051270 // regulation of cellular component movement // inferred from electronic annotation /// 0051270 // regulation of cellular component movement // not recorded /// 0060046 // regulation of acrosome reaction // inferred from electronic annotation /// 0060046 // regulation of acrosome reaction // not recorded /// 0060054 // positive regulation of epithelial cell proliferation involved in wound healing // inferred from electronic annotation /// 0060054 // positive regulation of epithelial cell proliferation involved in wound healing // not recorded /// 0060055 // angiogenesis involved in wound healing // inferred from electronic annotation /// 0060055 // angiogenesis involved in wound healing // not recorded /// 0060058 // positive regulation of apoptosis involved in mammary gland involution // inferred from electronic annotation /// 0060058 // positive regulation of apoptosis involved in mammary gland involution // not recorded 0000138 // Golgi trans cisterna // inferred from electronic annotation /// 0000138 // Golgi trans cisterna // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0030057 // desmosome // inferred from electronic annotation /// 0030057 // desmosome // not recorded /// 0030112 // glycocalyx // inferred from electronic annotation /// 0030112 // glycocalyx // not recorded /// 0031526 // brush border membrane // inferred from electronic annotation /// 0031526 // brush border membrane // not recorded /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0003831 // beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity // inferred from electronic annotation /// 0003831 // beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity // not recorded /// 0003945 // N-acetyllactosamine synthase activity // inferred from electronic annotation /// 0003945 // N-acetyllactosamine synthase activity // not recorded /// 0004461 // lactose synthase activity // inferred from electronic annotation /// 0004461 // lactose synthase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // not recorded /// 0008378 // galactosyltransferase activity // not recorded /// 0008378 // galactosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0035250 // UDP-galactosyltransferase activity // not recorded /// 0035250 // UDP-galactosyltransferase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043014 // alpha-tubulin binding // inferred from electronic annotation /// 0043014 // alpha-tubulin binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // not recorded 1375756_at BF408518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408518 /DB_XREF=gi:11396493 /DB_XREF=UI-R-BJ2-bre-g-01-0-UI.s1 /CLONE=UI-R-BJ2-bre-g-01-0-UI /FEA=EST /CNT=7 /TID=Rn.17100.1 /TIER=Stack /STK=6 /UG=Rn.17100 /UG_TITLE=ESTs BF408518 allograft inflammatory factor 1-like Aif1l 362107 NM_001108578 0005884 // actin filament // not recorded /// 0005925 // focal adhesion // not recorded /// 0015629 // actin cytoskeleton // not recorded /// 0043234 // protein complex // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1375757_at BE111764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111764 /DB_XREF=gi:8503869 /DB_XREF=UI-R-BJ1-avx-e-09-0-UI.s1 /CLONE=UI-R-BJ1-avx-e-09-0-UI /FEA=EST /CNT=7 /TID=Rn.49038.1 /TIER=Stack /STK=6 /UG=Rn.49038 /UG_TITLE=ESTs, Moderately similar to cyclin-dependent kinase 4 (Rattus norvegicus) (R.norvegicus) BE111764 1375758_at BF404935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404935 /DB_XREF=gi:11392910 /DB_XREF=UI-R-CA1-bij-e-03-0-UI.s1 /CLONE=UI-R-CA1-bij-e-03-0-UI /FEA=EST /CNT=7 /TID=Rn.63579.1 /TIER=Stack /STK=6 /UG=Rn.63579 /UG_TITLE=ESTs BF404935 1375759_at BF406233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406233 /DB_XREF=gi:11394208 /DB_XREF=UI-R-CA1-bjf-i-08-0-UI.s1 /CLONE=UI-R-CA1-bjf-i-08-0-UI /FEA=EST /CNT=7 /TID=Rn.61806.1 /TIER=Stack /STK=6 /UG=Rn.61806 /UG_TITLE=ESTs BF406233 1375760_at AI070270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070270 /DB_XREF=gi:3396521 /DB_XREF=UI-R-Y0-ls-g-09-0-UI.s1 /CLONE=UI-R-Y0-ls-g-09-0-UI /FEA=EST /CNT=7 /TID=Rn.22591.1 /TIER=Stack /STK=6 /UG=Rn.22591 /UG_TITLE=ESTs AI070270 1375761_at AW532391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532391 /DB_XREF=gi:7174805 /DB_XREF=UI-R-BT1-akc-h-04-0-UI.s1 /CLONE=UI-R-BT1-akc-h-04-0-UI /FEA=EST /CNT=7 /TID=Rn.46304.1 /TIER=Stack /STK=6 /UG=Rn.46304 /UG_TITLE=ESTs AW532391 Bcl2-associated athanogene 3 Bag3 293524 NM_001011936 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0021510 // spinal cord development // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1375762_at BF390910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390910 /DB_XREF=gi:11375757 /DB_XREF=UI-R-CA1-bce-a-04-0-UI.s1 /CLONE=UI-R-CA1-bce-a-04-0-UI /FEA=EST /CNT=7 /TID=Rn.60869.1 /TIER=Stack /STK=6 /UG=Rn.60869 /UG_TITLE=ESTs, Weakly similar to DnaJ-like protein (Rattus norvegicus) (R.norvegicus) BF390910 DnaJ (Hsp40) homolog, subfamily B, member 5 Dnajb5 313811 NM_001108004 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006457 // protein folding // inferred from electronic annotation /// 0006986 // response to unfolded protein // not recorded /// 0006986 // response to unfolded protein // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1375763_at BF407879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407879 /DB_XREF=gi:11395854 /DB_XREF=UI-R-BJ2-bqx-g-08-0-UI.s1 /CLONE=UI-R-BJ2-bqx-g-08-0-UI /FEA=EST /CNT=7 /TID=Rn.27022.1 /TIER=Stack /STK=6 /UG=Rn.27022 /UG_TITLE=ESTs BF407879 HEAT repeat containing 6 Heatr6 497972 NM_001079897 0005488 // binding // inferred from electronic annotation 1375764_at BE111346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111346 /DB_XREF=gi:8503451 /DB_XREF=UI-R-BJ1-ava-g-01-0-UI.s1 /CLONE=UI-R-BJ1-ava-g-01-0-UI /FEA=EST /CNT=7 /TID=Rn.4004.2 /TIER=Stack /STK=6 /UG=Rn.4004 /UG_TITLE=ESTs, Highly similar to T12468 hypothetical protein DKFZp564O123.1 (H.sapiens) BE111346 Chromatin modifying protein 2B Chmp2b 363720 XM_001063932 /// XM_343995 0015031 // protein transport // inferred from electronic annotation 0005622 // intracellular // not recorded 0005515 // protein binding // not recorded /// 0019904 // protein domain specific binding // not recorded 1375765_at BI296503 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296503 /DB_XREF=gi:14960990 /DB_XREF=UI-R-CV2-cgs-a-06-0-UI.s1 /CLONE=UI-R-CV2-cgs-a-06-0-UI /FEA=EST /CNT=8 /TID=Rn.50930.1 /TIER=Stack /STK=6 /UG=Rn.50930 /UG_TITLE=ESTs BI296503 1375766_at AI709710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709710 /DB_XREF=gi:4999486 /DB_XREF=UI-R-AG1-aah-f-05-0-UI.s1 /CLONE=UI-R-AG1-aah-f-05-0-UI /FEA=EST /CNT=7 /TID=Rn.3855.3 /TIER=Stack /STK=6 /UG=Rn.3855 /UG_TITLE=ESTs AI709710 AKT1 substrate 1 (proline-rich) Akt1s1 292887 NM_001106259 0006469 // negative regulation of protein kinase activity // not recorded /// 0032007 // negative regulation of TOR signaling cascade // not recorded /// 0043526 // neuroprotection // not recorded /// 0045792 // negative regulation of cell size // not recorded /// 0045884 // regulation of survival gene product expression // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0031931 // TORC1 complex // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0044445 // cytosolic part // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1375767_at BI287681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287681 /DB_XREF=gi:14943544 /DB_XREF=UI-R-CW0s-cck-e-06-0-UI.s1 /CLONE=UI-R-CW0s-cck-e-06-0-UI /FEA=EST /CNT=7 /TID=Rn.19912.1 /TIER=Stack /STK=6 /UG=Rn.19912 /UG_TITLE=ESTs BI287681 pleckstrin homology domain containing, family G (with RhoGef domain) member 3 Plekhg3 314249 XM_001080822 /// XM_002726757 /// XM_002729654 /// XM_234320 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1375768_at BE096021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096021 /DB_XREF=gi:8486952 /DB_XREF=UI-R-BU0-apk-d-10-0-UI.s1 /CLONE=UI-R-BU0-apk-d-10-0-UI /FEA=EST /CNT=7 /TID=Rn.46225.1 /TIER=Stack /STK=6 /UG=Rn.46225 /UG_TITLE=ESTs BE096021 jun D proto-oncogene Jund 24518 NM_138875 0002076 // osteoblast development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0007568 // aging // inferred from expression pattern /// 0007623 // circadian rhythm // inferred from expression pattern /// 0009416 // response to light stimulus // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016922 // ligand-dependent nuclear receptor binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred by curator /// 0046983 // protein dimerization activity // inferred from electronic annotation 1375769_at BI283106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283106 /DB_XREF=gi:14934522 /DB_XREF=UI-R-CU0s-cca-a-12-0-UI.s1 /CLONE=UI-R-CU0s-cca-a-12-0-UI /FEA=EST /CNT=7 /TID=Rn.42009.1 /TIER=Stack /STK=6 /UG=Rn.42009 /UG_TITLE=ESTs, Moderately similar to T46303 hypothetical protein DKFZp434N1710.1 (H.sapiens) BI283106 tripartite motif-containing 41 Trim41 303088 NM_001134737 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1375770_at BF404963 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404963 /DB_XREF=gi:11392938 /DB_XREF=UI-R-CA1-bij-g-08-0-UI.s1 /CLONE=UI-R-CA1-bij-g-08-0-UI /FEA=EST /CNT=6 /TID=Rn.57324.1 /TIER=Stack /STK=6 /UG=Rn.57324 /UG_TITLE=ESTs BF404963 1375771_at BF399598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399598 /DB_XREF=gi:11384606 /DB_XREF=UI-R-CA0-bht-h-07-0-UI.s2 /CLONE=UI-R-CA0-bht-h-07-0-UI /FEA=EST /CNT=6 /TID=Rn.51246.1 /TIER=Stack /STK=6 /UG=Rn.51246 /UG_TITLE=ESTs BF399598 SID1 transmembrane family, member 1 Sidt1 288109 NM_001100653 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1375772_at BI296534 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296534 /DB_XREF=gi:14961052 /DB_XREF=UI-R-CV2-cgs-d-01-0-UI.s1 /CLONE=UI-R-CV2-cgs-d-01-0-UI /FEA=EST /CNT=6 /TID=Rn.76410.1 /TIER=Stack /STK=6 /UG=Rn.76410 /UG_TITLE=ESTs BI296534 1375773_at BG379365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379365 /DB_XREF=gi:13303832 /DB_XREF=UI-R-CS0-btu-h-10-0-UI.s1 /CLONE=UI-R-CS0-btu-h-10-0-UI /FEA=EST /CNT=6 /TID=Rn.4018.2 /TIER=Stack /STK=6 /UG=Rn.4018 /UG_TITLE=ESTs BG379365 1375774_at BI296715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296715 /DB_XREF=gi:14961419 /DB_XREF=UI-R-CV2-cgv-e-03-0-UI.s1 /CLONE=UI-R-CV2-cgv-e-03-0-UI /FEA=EST /CNT=6 /TID=Rn.76391.1 /TIER=Stack /STK=6 /UG=Rn.76391 /UG_TITLE=ESTs, Weakly similar to S21348 probable pol polyprotein-related protein 4 - rat (R.norvegicus) BI296715 1375775_at BI296701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296701 /DB_XREF=gi:14961391 /DB_XREF=UI-R-CV2-cgv-c-10-0-UI.s1 /CLONE=UI-R-CV2-cgv-c-10-0-UI /FEA=EST /CNT=6 /TID=Rn.76400.1 /TIER=Stack /STK=6 /UG=Rn.76400 /UG_TITLE=ESTs BI296701 outer dense fiber of sperm tails 3B Odf3b 500917 NM_001191992 /// XM_001055507 /// XM_002726966 /// XM_002729844 /// XM_576327 1375776_at BF393112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393112 /DB_XREF=gi:11377972 /DB_XREF=UI-R-CA0-bgu-h-03-0-UI.s1 /CLONE=UI-R-CA0-bgu-h-03-0-UI /FEA=EST /CNT=6 /TID=Rn.57788.1 /TIER=Stack /STK=6 /UG=Rn.57788 /UG_TITLE=ESTs BF393112 1375777_at BF402633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402633 /DB_XREF=gi:11390608 /DB_XREF=UI-R-CA0-bhm-g-07-0-UI.s1 /CLONE=UI-R-CA0-bhm-g-07-0-UI /FEA=EST /CNT=6 /TID=Rn.62765.1 /TIER=Stack /STK=6 /UG=Rn.62765 /UG_TITLE=ESTs BF402633 1375778_at BI296704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296704 /DB_XREF=gi:14961397 /DB_XREF=UI-R-CV2-cgv-d-02-0-UI.s1 /CLONE=UI-R-CV2-cgv-d-02-0-UI /FEA=EST /CNT=6 /TID=Rn.66296.1 /TIER=Stack /STK=6 /UG=Rn.66296 /UG_TITLE=ESTs BI296704 1375779_at BI296535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296535 /DB_XREF=gi:14961054 /DB_XREF=UI-R-CV2-cgs-d-02-0-UI.s1 /CLONE=UI-R-CV2-cgs-d-02-0-UI /FEA=EST /CNT=6 /TID=Rn.79822.1 /TIER=Stack /STK=6 /UG=Rn.79822 /UG_TITLE=ESTs BI296535 1375780_at BM386309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386309 /DB_XREF=gi:18186362 /DB_XREF=UI-R-CN1-cjf-h-15-0-UI.s1 /CLONE=UI-R-CN1-cjf-h-15-0-UI /FEA=EST /CNT=6 /TID=Rn.50179.1 /TIER=Stack /STK=6 /UG=Rn.50179 /UG_TITLE=ESTs BM386309 1375781_at BF419844 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419844 /DB_XREF=gi:11407833 /DB_XREF=UI-R-CA0-bpg-h-07-0-UI.s1 /CLONE=UI-R-CA0-bpg-h-07-0-UI /FEA=EST /CNT=6 /TID=Rn.63660.1 /TIER=Stack /STK=6 /UG=Rn.63660 /UG_TITLE=ESTs BF419844 1375782_at BF412915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412915 /DB_XREF=gi:11400904 /DB_XREF=UI-R-CA0-boc-c-10-0-UI.s1 /CLONE=UI-R-CA0-boc-c-10-0-UI /FEA=EST /CNT=6 /TID=Rn.62193.1 /TIER=Stack /STK=6 /UG=Rn.62193 /UG_TITLE=ESTs BF412915 1375783_at BF404569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404569 /DB_XREF=gi:11392509 /DB_XREF=UI-R-CA1-big-e-12-0-UI.s1 /CLONE=UI-R-CA1-big-e-12-0-UI /FEA=EST /CNT=6 /TID=Rn.62569.1 /TIER=Stack /STK=6 /UG=Rn.62569 /UG_TITLE=ESTs BF404569 1375784_at BF412806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412806 /DB_XREF=gi:11400795 /DB_XREF=UI-R-BT1-bnz-f-05-0-UI.s1 /CLONE=UI-R-BT1-bnz-f-05-0-UI /FEA=EST /CNT=6 /TID=Rn.31998.2 /TIER=Stack /STK=6 /UG=Rn.31998 /LL=25129 /UG_GENE=Egr4l1 /UG_TITLE=Zinc-finger transcription factor NGFI-C (early response gene) BF412806 Early growth response 4 Egr4 25129 NM_019137 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1375785_at AI101490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101490 /DB_XREF=gi:3706382 /DB_XREF=EST210779 /CLONE=RBRBP81 /FEA=EST /CNT=6 /TID=Rn.41388.1 /TIER=Stack /STK=6 /UG=Rn.41388 /UG_TITLE=ESTs AI101490 fukutin Fktn 362520 NM_001108667 0005794 // Golgi apparatus // not recorded /// 0005801 // cis-Golgi network // not recorded 1375786_at BF413396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413396 /DB_XREF=gi:11401385 /DB_XREF=UI-R-CA0-boe-f-01-0-UI.s1 /CLONE=UI-R-CA0-boe-f-01-0-UI /FEA=EST /CNT=6 /TID=Rn.62329.1 /TIER=Stack /STK=6 /UG=Rn.62329 /UG_TITLE=ESTs BF413396 1375787_at BF387587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387587 /DB_XREF=gi:11372411 /DB_XREF=UI-R-CA1-bbs-a-12-0-UI.s1 /CLONE=UI-R-CA1-bbs-a-12-0-UI /FEA=EST /CNT=6 /TID=Rn.57937.1 /TIER=Stack /STK=6 /UG=Rn.57937 /UG_TITLE=ESTs BF387587 Similar to 2410024A21Rik protein RGD1304878 314415 XR_005460 /// XR_009633 1375788_at BM388719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388719 /DB_XREF=gi:18188772 /DB_XREF=UI-R-DZ0-ckm-j-20-0-UI.s1 /CLONE=UI-R-DZ0-ckm-j-20-0-UI /FEA=EST /CNT=6 /TID=Rn.8562.3 /TIER=Stack /STK=6 /UG=Rn.8562 /LL=84476 /UG_GENE=Spnr /UG_TITLE=double-stranded RNA-binding protein p74 BM388719 Ribosomal protein L7 Rpl7 297755 NM_001100534 0006364 // rRNA processing // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0042273 // ribosomal large subunit biogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1375789_at BE100627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100627 /DB_XREF=gi:8492524 /DB_XREF=UI-R-BJ1-auk-e-12-0-UI.s1 /CLONE=UI-R-BJ1-auk-e-12-0-UI /FEA=EST /CNT=6 /TID=Rn.48025.3 /TIER=Stack /STK=6 /UG=Rn.48025 /LL=56813 /UG_GENE=LOC56813 /UG_TITLE=parathyroid hormone receptor BE100627 Parathyroid hormone receptor 1 Pthr1 56813 NM_020073 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001503 // ossification // not recorded /// 0001503 // ossification // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // not recorded /// 0002076 // osteoblast development // inferred from electronic annotation /// 0002076 // osteoblast development // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007568 // aging // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0030282 // bone mineralization // inferred from electronic annotation /// 0030282 // bone mineralization // not recorded /// 0045453 // bone resorption // inferred from electronic annotation /// 0045453 // bone resorption // not recorded /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0031526 // brush border membrane // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004991 // parathyroid hormone receptor activity // inferred from direct assay /// 0004991 // parathyroid hormone receptor activity // not recorded /// 0004991 // parathyroid hormone receptor activity // inferred from electronic annotation 1375790_at BI300458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300458 /DB_XREF=gi:14976738 /DB_XREF=UI-R-CV2-cif-c-01-0-UI.s1 /CLONE=UI-R-CV2-cif-c-01-0-UI /FEA=EST /CNT=6 /TID=Rn.40861.1 /TIER=Stack /STK=6 /UG=Rn.40861 /UG_TITLE=ESTs BI300458 1375791_at AW252675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252675 /DB_XREF=gi:6596266 /DB_XREF=UI-R-BJ0-aeb-c-07-0-UI.s1 /CLONE=UI-R-BJ0-aeb-c-07-0-UI /FEA=EST /CNT=6 /TID=Rn.41134.1 /TIER=Stack /STK=6 /UG=Rn.41134 /UG_TITLE=ESTs AW252675 Similar to KIAA1161 protein RGD1309821 366360 NM_001108971 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation 1375792_at AW252149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252149 /DB_XREF=gi:6595740 /DB_XREF=UI-R-BJ0-aee-g-09-0-UI.s1 /CLONE=UI-R-BJ0-aee-g-09-0-UI /FEA=EST /CNT=6 /TID=Rn.16649.1 /TIER=Stack /STK=6 /UG=Rn.16649 /UG_TITLE=ESTs AW252149 zinc finger protein 532 Znf532 307362 NM_001107382 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1375793_at BI295700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295700 /DB_XREF=gi:14959410 /DB_XREF=UI-R-DK0-ceu-e-12-0-UI.s1 /CLONE=UI-R-DK0-ceu-e-12-0-UI /FEA=EST /CNT=6 /TID=Rn.53937.1 /TIER=Stack /STK=6 /UG=Rn.53937 /UG_TITLE=ESTs BI295700 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0035097 // histone methyltransferase complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042800 // histone methyltransferase activity (H3-K4 specific) // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375794_at BF403635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403635 /DB_XREF=gi:11391610 /DB_XREF=UI-R-CA1-bjd-p-08-0-UI.s1 /CLONE=UI-R-CA1-bjd-p-08-0-UI /FEA=EST /CNT=6 /TID=Rn.63100.1 /TIER=Stack /STK=6 /UG=Rn.63100 /UG_TITLE=ESTs BF403635 1375795_at BI301062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301062 /DB_XREF=gi:14977342 /DB_XREF=UI-R-CV2-cgm-c-02-0-UI.s2 /CLONE=UI-R-CV2-cgm-c-02-0-UI /FEA=EST /CNT=6 /TID=Rn.73068.1 /TIER=Stack /STK=6 /UG=Rn.73068 /UG_TITLE=ESTs BI301062 1375796_at BI300770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300770 /DB_XREF=gi:14977050 /DB_XREF=UI-R-CV2-cij-d-07-0-UI.s1 /CLONE=UI-R-CV2-cij-d-07-0-UI /FEA=EST /CNT=6 /TID=Rn.73062.1 /TIER=Stack /STK=6 /UG=Rn.73062 /UG_TITLE=ESTs, Weakly similar to I56251 GTP binding protein - mouse (M.musculus) BI300770 interferon gamma induced GTPase /// rCG32835-like Igtp /// LOC100365070 100365070 /// 303163 NM_001008765 /// XM_002724497 0006184 // GTP catabolic process // not recorded 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003924 // GTPase activity // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0016817 // hydrolase activity, acting on acid anhydrides // inferred from electronic annotation 1375797_at BF416482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416482 /DB_XREF=gi:11404471 /DB_XREF=UI-R-CA0-bkk-b-04-0-UI.s1 /CLONE=UI-R-CA0-bkk-b-04-0-UI /FEA=EST /CNT=6 /TID=Rn.63035.1 /TIER=Stack /STK=6 /UG=Rn.63035 /UG_TITLE=ESTs BF416482 1375798_at BF410097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410097 /DB_XREF=gi:11398072 /DB_XREF=UI-R-CA1-bjt-e-04-0-UI.s1 /CLONE=UI-R-CA1-bjt-e-04-0-UI /FEA=EST /CNT=6 /TID=Rn.64339.1 /TIER=Stack /STK=6 /UG=Rn.64339 /UG_TITLE=ESTs BF410097 1375799_at AI763826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763826 /DB_XREF=gi:5209761 /DB_XREF=UI-R-Y0-acs-e-03-0-UI.s1 /CLONE=UI-R-Y0-acs-e-03-0-UI /FEA=EST /CNT=6 /TID=Rn.17349.1 /TIER=Stack /STK=6 /UG=Rn.17349 /UG_TITLE=ESTs AI763826 transmembrane protein 121 Tmem121 691678 XM_001079243 /// XM_002726782 1375800_at BE117206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117206 /DB_XREF=gi:8509311 /DB_XREF=UI-R-BS1-ayh-a-10-0-UI.s1 /CLONE=UI-R-BS1-ayh-a-10-0-UI /FEA=EST /CNT=6 /TID=Rn.22640.1 /TIER=Stack /STK=6 /UG=Rn.22640 /UG_TITLE=ESTs BE117206 1375801_at BE113834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113834 /DB_XREF=gi:8505939 /DB_XREF=UI-R-BJ1-awh-h-11-0-UI.s1 /CLONE=UI-R-BJ1-awh-h-11-0-UI /FEA=EST /CNT=6 /TID=Rn.15187.2 /TIER=Stack /STK=6 /UG=Rn.15187 /LL=171458 /UG_GENE=Ipmk /UG_TITLE=inositol polyphosphate multikinase BE113834 Inositol polyphosphate multikinase Ipmk 171458 NM_134417 0001841 // neural tube formation // not recorded /// 0046853 // inositol and derivative phosphorylation // not recorded 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000824 // inositol tetrakisphosphate 3-kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008440 // inositol trisphosphate 3-kinase activity // inferred from electronic annotation /// 0008440 // inositol trisphosphate 3-kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1375802_at AI011610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011610 /DB_XREF=gi:3225442 /DB_XREF=EST206061 /CLONE=ROVAX31 /FEA=EST /CNT=6 /TID=Rn.23271.2 /TIER=Stack /STK=6 /UG=Rn.23271 /UG_TITLE=Rattus norvegicus mRNA for Lon, complete cds AI011610 Lon peptidase 1, mitochondrial Lonp1 170916 NM_133404 0001666 // response to hypoxia // inferred from expression pattern /// 0001666 // response to hypoxia // not recorded /// 0006200 // ATP catabolic process // not recorded /// 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0007005 // mitochondrion organization // inferred from expression pattern /// 0007005 // mitochondrion organization // not recorded /// 0007568 // aging // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0010044 // response to aluminum ion // inferred from expression pattern /// 0034599 // cellular response to oxidative stress // not recorded /// 0043623 // cellular protein complex assembly // inferred from mutant phenotype /// 0051260 // protein homooligomerization // not recorded /// 0051603 // proteolysis involved in cellular protein catabolic process // not recorded /// 0070407 // oxidation-dependent protein catabolic process // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // not recorded /// 0003727 // single-stranded RNA binding // not recorded /// 0004176 // ATP-dependent peptidase activity // inferred from direct assay /// 0004176 // ATP-dependent peptidase activity // not recorded /// 0004176 // ATP-dependent peptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0043531 // ADP binding // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0051880 // G-quadruplex DNA binding // not recorded /// 0070182 // DNA polymerase binding // not recorded /// 0070361 // mitochondrial light strand promoter anti-sense binding // not recorded /// 0070362 // mitochondrial heavy strand promoter anti-sense binding // not recorded /// 0070363 // mitochondrial light strand promoter sense binding // not recorded /// 0070364 // mitochondrial heavy strand promoter sense binding // not recorded 1375803_at AI235295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235295 /DB_XREF=gi:3828801 /DB_XREF=EST231857 /CLONE=ROVCP93 /FEA=EST /CNT=6 /TID=Rn.11423.3 /TIER=Stack /STK=6 /UG=Rn.11423 /LL=25637 /UG_GENE=Ptger1 /UG_TITLE=Prostaglandin E receptor 1 (subtype EP1) AI235295 Prostaglandin E receptor 1 (subtype EP1) Ptger1 25637 NM_013100 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004955 // prostaglandin receptor activity // inferred from electronic annotation /// 0004957 // prostaglandin E receptor activity // inferred from direct assay /// 0004957 // prostaglandin E receptor activity // inferred from electronic annotation 1375804_at AI227657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227657 /DB_XREF=gi:4135265 /DB_XREF=EST224352 /CLONE=RBRCJ83 /FEA=EST /CNT=6 /TID=Rn.23875.1 /TIER=Stack /STK=6 /UG=Rn.23875 /UG_TITLE=ESTs, Moderately similar to connexin46.6 (H.sapiens) AI227657 Gap junction protein, gamma 2 Gjc2 497913 NM_001100784 /// XM_001076914 /// XM_002727715 /// XM_573100 0007154 // cell communication // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0055085 // transmembrane transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005921 // gap junction // not recorded /// 0005922 // connexon complex // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005243 // gap junction channel activity // not recorded 1375805_at AI599488 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599488 /DB_XREF=gi:4608536 /DB_XREF=EST251191 /CLONE=REMDX83 /FEA=EST /CNT=6 /TID=Rn.38675.1 /TIER=Stack /STK=6 /UG=Rn.38675 /UG_TITLE=ESTs, Weakly similar to Domain in SPla and the ryanodine Receptor. (Caenorhabditis elegans) (C.elegans) AI599488 Similar to KB07 protein RGD1561940 364686 XM_002725261 /// XM_002728470 1375806_at BF389535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389535 /DB_XREF=gi:11374370 /DB_XREF=UI-R-CJ0-bfc-h-03-0-UI.s1 /CLONE=UI-R-CJ0-bfc-h-03-0-UI /FEA=EST /CNT=6 /TID=Rn.45960.1 /TIER=Stack /STK=6 /UG=Rn.45960 /UG_TITLE=ESTs, Highly similar to I49523 Mouse primary response gene B94 mRNA, 3end - mouse (M.musculus) BF389535 tumor necrosis factor, alpha-induced protein 2 Tnfaip2 299339 NM_001137633 1375807_at AI602886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602886 /DB_XREF=gi:4612047 /DB_XREF=UI-R-AE0-xm-h-07-0-UI.s1 /CLONE=UI-R-AE0-xm-h-07-0-UI /FEA=EST /CNT=6 /TID=Rn.80679.4 /TIER=Stack /STK=6 /UG=Rn.80679 /LL=29553 /UG_GENE=Kcnk3 /UG_TITLE=potassium channel, subfamily K, member 3 AI602886 Potassium channel, subfamily K, member 3 Kcnk3 29553 NM_033376 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // inferred from mutant phenotype /// 0051481 // reduction of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0071294 // cellular response to zinc ion // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from mutant phenotype /// 0090102 // cochlea development // inferred from expression pattern 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005252 // open rectifier potassium channel activity // inferred from direct assay /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from mutant phenotype /// 0046982 // protein heterodimerization activity // inferred from mutant phenotype 1375808_at AI070303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070303 /DB_XREF=gi:3396554 /DB_XREF=UI-R-Y0-lt-e-03-0-UI.s1 /CLONE=UI-R-Y0-lt-e-03-0-UI /FEA=EST /CNT=6 /TID=Rn.21284.1 /TIER=Stack /STK=6 /UG=Rn.21284 /UG_TITLE=ESTs, Weakly similar to PSS8_RAT Prostasin precursor (R.norvegicus) AI070303 protease, serine 27 Prss27 287108 NM_182949 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1375809_at AW521361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521361 /DB_XREF=gi:7163739 /DB_XREF=UI-R-BO0-agl-f-04-0-UI.s1 /CLONE=UI-R-BO0-agl-f-04-0-UI /FEA=EST /CNT=6 /TID=Rn.23153.1 /TIER=Stack /STK=6 /UG=Rn.23153 /UG_TITLE=ESTs, Weakly similar to TC17 RAT TRANSCRIPTION FACTOR 17 (R.norvegicus) AW521361 YY1 transcription factor Yy1 24919 NM_173290 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0045939 // negative regulation of steroid metabolic process // non-traceable author statement /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from direct assay /// 0005667 // transcription factor complex // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0031519 // PcG protein complex // inferred from electronic annotation /// 0031519 // PcG protein complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016566 // specific transcriptional repressor activity // inferred from direct assay /// 0016566 // specific transcriptional repressor activity // not recorded 1375810_at AI579708 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI579708 /DB_XREF=gi:4564084 /DB_XREF=UI-R-AA0-ws-h-07-0-UI.s1 /CLONE=UI-R-AA0-ws-h-07-0-UI /FEA=EST /CNT=6 /TID=Rn.39170.1 /TIER=Stack /STK=6 /UG=Rn.39170 /UG_TITLE=ESTs, Highly similar to I38228 Shb protein (H.sapiens) AI579708 Similar to Shb protein RGD1565350 362513 XM_002726522 /// XM_002729477 0005515 // protein binding // inferred from electronic annotation 1375811_at BE096208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096208 /DB_XREF=gi:8487139 /DB_XREF=UI-R-BU0-apc-c-09-0-UI.s1 /CLONE=UI-R-BU0-apc-c-09-0-UI /FEA=EST /CNT=6 /TID=Rn.41218.1 /TIER=Stack /STK=6 /UG=Rn.41218 /UG_TITLE=ESTs BE096208 paladin Pald 294508 NM_001034128 1375812_at BG376824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376824 /DB_XREF=gi:13301296 /DB_XREF=UI-R-CA1-blh-f-02-0-UI.s1 /CLONE=UI-R-CA1-blh-f-02-0-UI /FEA=EST /CNT=6 /TID=Rn.44921.1 /TIER=Stack /STK=6 /UG=Rn.44921 /UG_TITLE=ESTs, Weakly similar to A25704 synapsin I - rat (R.norvegicus) BG376824 OTU domain containing 7A Otud7a 309252 XM_001058176 /// XM_219703 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1375813_at BE102687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102687 /DB_XREF=gi:8494786 /DB_XREF=UI-R-BT1-aqs-h-08-0-UI.s1 /CLONE=UI-R-BT1-aqs-h-08-0-UI /FEA=EST /CNT=6 /TID=Rn.49166.1 /TIER=Stack /STK=6 /UG=Rn.49166 /UG_TITLE=ESTs, Weakly similar to A53414 A-kinase anchor protein 95, AKAP95 - rat (R.norvegicus) BE102687 A kinase (PRKA) anchor protein 8-like Akap8l 299569 NM_001013946 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375814_at BG380887 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380887 /DB_XREF=gi:13305359 /DB_XREF=UI-R-CT0-buc-e-10-0-UI.s1 /CLONE=UI-R-CT0-buc-e-10-0-UI /FEA=EST /CNT=6 /TID=Rn.52698.1 /TIER=Stack /STK=6 /UG=Rn.52698 /UG_TITLE=ESTs BG380887 1375815_at BF391129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391129 /DB_XREF=gi:11375976 /DB_XREF=UI-R-CA1-bcd-e-11-0-UI.s1 /CLONE=UI-R-CA1-bcd-e-11-0-UI /FEA=EST /CNT=6 /TID=Rn.63538.1 /TIER=Stack /STK=6 /UG=Rn.63538 /UG_TITLE=ESTs BF391129 1375816_at BI296706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296706 /DB_XREF=gi:14961401 /DB_XREF=UI-R-CV2-cgv-d-04-0-UI.s1 /CLONE=UI-R-CV2-cgv-d-04-0-UI /FEA=EST /CNT=6 /TID=Rn.73087.1 /TIER=Stack /STK=6 /UG=Rn.73087 /UG_TITLE=ESTs BI296706 1375817_at BI299780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299780 /DB_XREF=gi:14976060 /DB_XREF=UI-R-CV2-chx-b-07-0-UI.s1 /CLONE=UI-R-CV2-chx-b-07-0-UI /FEA=EST /CNT=6 /TID=Rn.73433.1 /TIER=Stack /STK=6 /UG=Rn.73433 /UG_TITLE=ESTs BI299780 1375818_at BI300400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300400 /DB_XREF=gi:14976675 /DB_XREF=UI-R-CV2-cie-e-02-0-UI.s1 /CLONE=UI-R-CV2-cie-e-02-0-UI /FEA=EST /CNT=6 /TID=Rn.73451.1 /TIER=Stack /STK=6 /UG=Rn.73451 /UG_TITLE=ESTs, Weakly similar to T26938 hypothetical protein Y45F10D.11 - Caenorhabditis elegans (C.elegans) BI300400 lactamase, beta Lactb 300803 NM_001106833 0005739 // mitochondrion // not recorded 1375819_at BI299678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299678 /DB_XREF=gi:14975958 /DB_XREF=UI-R-CV2-chw-a-05-0-UI.s1 /CLONE=UI-R-CV2-chw-a-05-0-UI /FEA=EST /CNT=6 /TID=Rn.22071.1 /TIER=Stack /STK=6 /UG=Rn.22071 /UG_TITLE=ESTs, Weakly similar to T21387 hypothetical protein F26A3.7 - Caenorhabditis elegans (C.elegans) BI299678 similar to RIKEN cDNA 1200011I18 RGD1307254 298712 NM_001024875 1375820_at BF403869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403869 /DB_XREF=gi:11391844 /DB_XREF=UI-R-CA1-bix-n-11-0-UI.s1 /CLONE=UI-R-CA1-bix-n-11-0-UI /FEA=EST /CNT=6 /TID=Rn.7551.2 /TIER=Stack /STK=6 /UG=Rn.7551 /UG_TITLE=ESTs BF403869 1375821_at BF390754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390754 /DB_XREF=gi:11375606 /DB_XREF=UI-R-CA1-bcp-b-07-0-UI.s1 /CLONE=UI-R-CA1-bcp-b-07-0-UI /FEA=EST /CNT=6 /TID=Rn.62200.1 /TIER=Stack /STK=6 /UG=Rn.62200 /UG_TITLE=ESTs BF390754 1375822_at BF413399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413399 /DB_XREF=gi:11401388 /DB_XREF=UI-R-CA0-boe-f-04-0-UI.s1 /CLONE=UI-R-CA0-boe-f-04-0-UI /FEA=EST /CNT=6 /TID=Rn.62330.1 /TIER=Stack /STK=6 /UG=Rn.62330 /UG_TITLE=ESTs BF413399 1375823_at BF392130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392130 /DB_XREF=gi:11376987 /DB_XREF=UI-R-CA0-bfe-e-12-0-UI.s1 /CLONE=UI-R-CA0-bfe-e-12-0-UI /FEA=EST /CNT=6 /TID=Rn.57752.1 /TIER=Stack /STK=6 /UG=Rn.57752 /UG_TITLE=ESTs BF392130 1375824_at BF406232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406232 /DB_XREF=gi:11394207 /DB_XREF=UI-R-CA1-bjf-i-06-0-UI.s1 /CLONE=UI-R-CA1-bjf-i-06-0-UI /FEA=EST /CNT=6 /TID=Rn.60928.1 /TIER=Stack /STK=6 /UG=Rn.60928 /UG_TITLE=ESTs BF406232 1375825_at BM382867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM382867 /DB_XREF=gi:18182920 /DB_XREF=UI-R-BT1-bko-g-05-0-UI.s1 /CLONE=UI-R-BT1-bko-g-05-0-UI /FEA=EST /CNT=6 /TID=Rn.62221.1 /TIER=Stack /STK=6 /UG=Rn.62221 /UG_TITLE=ESTs, Weakly similar to T29037 hypothetical protein B0034.3 - Caenorhabditis elegans (C.elegans) BM382867 1375826_at BF410192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410192 /DB_XREF=gi:11398167 /DB_XREF=UI-R-CA1-bju-e-11-0-UI.s1 /CLONE=UI-R-CA1-bju-e-11-0-UI /FEA=EST /CNT=6 /TID=Rn.63068.1 /TIER=Stack /STK=6 /UG=Rn.63068 /UG_TITLE=ESTs BF410192 G protein-coupled receptor 61 Gpr61 310780 NM_001107715 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1375827_at BF404349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404349 /DB_XREF=gi:11392324 /DB_XREF=UI-R-CA1-bie-a-10-0-UI.s1 /CLONE=UI-R-CA1-bie-a-10-0-UI /FEA=EST /CNT=6 /TID=Rn.63654.1 /TIER=Stack /STK=6 /UG=Rn.63654 /UG_TITLE=ESTs BF404349 Zinc finger protein 292 Znf292 50552 NM_001008879 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008134 // transcription factor binding // non-traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay 1375828_at BF390631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390631 /DB_XREF=gi:11375478 /DB_XREF=UI-R-CA1-bck-d-08-0-UI.s1 /CLONE=UI-R-CA1-bck-d-08-0-UI /FEA=EST /CNT=6 /TID=Rn.64313.1 /TIER=Stack /STK=6 /UG=Rn.64313 /UG_TITLE=ESTs BF390631 1375829_at AW525101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525101 /DB_XREF=gi:7167486 /DB_XREF=UI-R-BJ0p-aim-g-11-0-UI.s1 /CLONE=UI-R-BJ0p-aim-g-11-0-UI /FEA=EST /CNT=6 /TID=Rn.22131.1 /TIER=Stack /STK=6 /UG=Rn.22131 /UG_TITLE=ESTs AW525101 family with sequence similarity 45, member A Fam45a 308009 NM_001127681 1375830_at AW522779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522779 /DB_XREF=gi:7165164 /DB_XREF=UI-R-BO0-ahk-f-10-0-UI.s1 /CLONE=UI-R-BO0-ahk-f-10-0-UI /FEA=EST /CNT=6 /TID=Rn.34694.1 /TIER=Stack /STK=6 /UG=Rn.34694 /UG_TITLE=ESTs, Weakly similar to RB14_HUMAN RAS-RELATED PROTEIN RAB-14 (R.norvegicus) AW522779 1375831_at AW528794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528794 /DB_XREF=gi:7171208 /DB_XREF=UI-R-BT1-aki-f-05-0-UI.s1 /CLONE=UI-R-BT1-aki-f-05-0-UI /FEA=EST /CNT=6 /TID=Rn.47009.1 /TIER=Stack /STK=6 /UG=Rn.47009 /UG_TITLE=ESTs, Weakly similar to ROG MOUSE HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN G (M.musculus) AW528794 similar to testes-specific heterogenous nuclear ribonucleoprotein G-T LOC365344 365344 XR_006886 /// XR_009075 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1375832_at BF399764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399764 /DB_XREF=gi:11384774 /DB_XREF=UI-R-CA0-bhy-c-10-0-UI.s2 /CLONE=UI-R-CA0-bhy-c-10-0-UI /FEA=EST /CNT=6 /TID=Rn.60750.1 /TIER=Stack /STK=6 /UG=Rn.60750 /UG_TITLE=ESTs, Moderately similar to ACHAETE-SCUTE HOMOLOG 1 (R.norvegicus) BF399764 1375833_at AA923975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA923975 /DB_XREF=gi:4234067 /DB_XREF=UI-R-A1-dq-e-11-0-UI.s1 /CLONE=UI-R-A1-dq-e-11-0-UI /FEA=EST /CNT=6 /TID=Rn.43531.1 /TIER=Stack /STK=6 /UG=Rn.43531 /UG_TITLE=ESTs, Weakly similar to 2208451B syntrophin (M.musculus) AA923975 Protein tyrosine phosphatase, non-receptor type 4 Ptpn4 246116 NM_001100479 0016311 // dephosphorylation // not recorded 0004726 // non-membrane spanning protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004726 // non-membrane spanning protein tyrosine phosphatase activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375834_at BF409874 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409874 /DB_XREF=gi:11397849 /DB_XREF=UI-R-CA1-bjr-g-10-0-UI.s1 /CLONE=UI-R-CA1-bjr-g-10-0-UI /FEA=EST /CNT=6 /TID=Rn.61513.1 /TIER=Stack /STK=6 /UG=Rn.61513 /UG_TITLE=ESTs, Weakly similar to R107 RAT H-REV 107 PROTEIN (R.norvegicus) BF409874 HRAS-like suppressor family, member 5 Hrasls5 293711 NM_001039007 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375835_at BE119806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119806 /DB_XREF=gi:8511911 /DB_XREF=UI-R-CA0-ban-c-03-0-UI.s1 /CLONE=UI-R-CA0-ban-c-03-0-UI /FEA=EST /CNT=6 /TID=Rn.51208.1 /TIER=Stack /STK=6 /UG=Rn.51208 /UG_TITLE=ESTs BE119806 Protein kinase, AMP-activated, gamma 2 non-catalytic subunit Prkag2 373545 NM_184051 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // not recorded /// 0006110 // regulation of glycolysis // inferred from electronic annotation /// 0006110 // regulation of glycolysis // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0010800 // positive regulation of peptidyl-threonine phosphorylation // inferred from electronic annotation /// 0010800 // positive regulation of peptidyl-threonine phosphorylation // not recorded /// 0019217 // regulation of fatty acid metabolic process // inferred from electronic annotation /// 0019217 // regulation of fatty acid metabolic process // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0046320 // regulation of fatty acid oxidation // not recorded /// 0050790 // regulation of catalytic activity // inferred from direct assay 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0031588 // AMP-activated protein kinase complex // inferred from direct assay /// 0031588 // AMP-activated protein kinase complex // inferred from mutant phenotype /// 0031588 // AMP-activated protein kinase complex // not recorded /// 0031588 // AMP-activated protein kinase complex // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004679 // AMP-activated protein kinase activity // inferred from direct assay /// 0004679 // AMP-activated protein kinase activity // inferred from mutant phenotype /// 0004862 // cAMP-dependent protein kinase inhibitor activity // inferred from electronic annotation /// 0004862 // cAMP-dependent protein kinase inhibitor activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from electronic annotation /// 0008603 // cAMP-dependent protein kinase regulator activity // not recorded /// 0008607 // phosphorylase kinase regulator activity // inferred from electronic annotation /// 0008607 // phosphorylase kinase regulator activity // not recorded /// 0016208 // AMP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0030295 // protein kinase activator activity // inferred from electronic annotation /// 0030295 // protein kinase activator activity // not recorded /// 0043531 // ADP binding // inferred from electronic annotation /// 0043531 // ADP binding // not recorded 1375836_at BF399108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399108 /DB_XREF=gi:11384112 /DB_XREF=UI-R-CA1-bja-f-12-0-UI.s1 /CLONE=UI-R-CA1-bja-f-12-0-UI /FEA=EST /CNT=6 /TID=Rn.64383.1 /TIER=Stack /STK=6 /UG=Rn.64383 /UG_TITLE=ESTs BF399108 1375837_at BF410412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410412 /DB_XREF=gi:11398387 /DB_XREF=UI-R-CA1-bjx-b-11-0-UI.s1 /CLONE=UI-R-CA1-bjx-b-11-0-UI /FEA=EST /CNT=6 /TID=Rn.63262.1 /TIER=Stack /STK=6 /UG=Rn.63262 /UG_TITLE=ESTs BF410412 1375838_at BF399901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399901 /DB_XREF=gi:11384912 /DB_XREF=UI-R-CA1-bja-e-22-0-UI.s1 /CLONE=UI-R-CA1-bja-e-22-0-UI /FEA=EST /CNT=6 /TID=Rn.59199.1 /TIER=Stack /STK=6 /UG=Rn.59199 /UG_TITLE=ESTs BF399901 1375839_at BF393490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393490 /DB_XREF=gi:11378351 /DB_XREF=UI-R-CA0-bfu-e-06-0-UI.s1 /CLONE=UI-R-CA0-bfu-e-06-0-UI /FEA=EST /CNT=6 /TID=Rn.52119.1 /TIER=Stack /STK=6 /UG=Rn.52119 /UG_TITLE=ESTs BF393490 1375840_at BF404611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404611 /DB_XREF=gi:11392586 /DB_XREF=UI-R-CA1-bih-e-06-0-UI.s1 /CLONE=UI-R-CA1-bih-e-06-0-UI /FEA=EST /CNT=6 /TID=Rn.59963.1 /TIER=Stack /STK=6 /UG=Rn.59963 /UG_TITLE=ESTs BF404611 1375841_at BI282607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282607 /DB_XREF=gi:14933546 /DB_XREF=UI-R-CW0s-ccd-a-08-0-UI.s1 /CLONE=UI-R-CW0s-ccd-a-08-0-UI /FEA=EST /CNT=19 /TID=Rn.8153.1 /TIER=ConsEnd /STK=5 /UG=Rn.8153 /UG_TITLE=ESTs BI282607 1375842_at AI177505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177505 /DB_XREF=gi:3728143 /DB_XREF=EST221137 /CLONE=RPLCA84 /FEA=EST /CNT=14 /TID=Rn.6717.1 /TIER=ConsEnd /STK=5 /UG=Rn.6717 /UG_TITLE=ESTs AI177505 1375843_at BM383777 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383777 /DB_XREF=gi:18183830 /DB_XREF=UI-R-DM1-ckb-f-13-0-UI.s1 /CLONE=UI-R-DM1-ckb-f-13-0-UI /FEA=EST /CNT=18 /TID=Rn.22226.1 /TIER=ConsEnd /STK=5 /UG=Rn.22226 /UG_TITLE=ESTs BM383777 iduronate 2-sulfatase Ids 363513 XM_001054447 /// XM_579042 0003824 // catalytic activity // inferred from electronic annotation /// 0004423 // iduronate-2-sulfatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008484 // sulfuric ester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1375844_at AI406370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406370 /DB_XREF=gi:4249874 /DB_XREF=EST234656 /CLONE=RBRDM88 /FEA=EST /CNT=17 /TID=Rn.20643.1 /TIER=ConsEnd /STK=5 /UG=Rn.20643 /UG_TITLE=ESTs, Moderately similar to S15552 polypyrimidine tract-binding protein 1 - rat (R.norvegicus) AI406370 polypyrimidine tract binding protein 2 Ptbp2 310820 NM_001005555 0006376 // mRNA splice site selection // inferred from electronic annotation /// 0006376 // mRNA splice site selection // not recorded /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375845_at BI290029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290029 /DB_XREF=gi:14948211 /DB_XREF=UI-R-DK0-cfr-a-05-0-UI.s1 /CLONE=UI-R-DK0-cfr-a-05-0-UI /FEA=EST /CNT=17 /TID=Rn.14443.1 /TIER=ConsEnd /STK=5 /UG=Rn.14443 /UG_TITLE=ESTs BI290029 androgen-induced 1 Aig1 292486 NM_001134425 0016021 // integral to membrane // inferred from electronic annotation 1375846_at BE113490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113490 /DB_XREF=gi:8505595 /DB_XREF=UI-R-BJ1-awl-h-10-0-UI.s1 /CLONE=UI-R-BJ1-awl-h-10-0-UI /FEA=EST /CNT=14 /TID=Rn.22769.1 /TIER=ConsEnd /STK=5 /UG=Rn.22769 /UG_TITLE=ESTs BE113490 Xenotropic and polytropic retrovirus receptor 1 Xpr1 289424 NM_001105992 0007165 // signal transduction // not recorded /// 0009615 // response to virus // inferred from electronic annotation /// 0009615 // response to virus // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // not recorded 1375847_at BF282594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282594 /DB_XREF=gi:11213664 /DB_XREF=EST447185 /CLONE=RGIDQ54 /FEA=EST /CNT=14 /TID=Rn.16063.1 /TIER=ConsEnd /STK=5 /UG=Rn.16063 /UG_TITLE=ESTs BF282594 nudix (nucleoside diphosphate linked moiety X)-type motif 16 Nudt16 363129 NM_001127554 0016787 // hydrolase activity // inferred from electronic annotation 1375848_at BG668051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668051 /DB_XREF=gi:13889973 /DB_XREF=DRABUB08 /CLONE=DRABUB08 /FEA=EST /CNT=12 /TID=Rn.1100.1 /TIER=ConsEnd /STK=5 /UG=Rn.1100 /UG_TITLE=ESTs, Weakly similar to PON1 RAT SERUM PARAOXONASEARYLESTERASE 1 (R.norvegicus) BG668051 paraoxonase 2 Pon2 296851 NM_001013082 0006979 // response to oxidative stress // inferred from expression pattern /// 0019439 // aromatic compound catabolic process // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004063 // aryldialkylphosphatase activity // inferred from electronic annotation /// 0004064 // arylesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1375849_at BE110095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110095 /DB_XREF=gi:8502200 /DB_XREF=UI-R-BJ1-avf-a-05-0-UI.s1 /CLONE=UI-R-BJ1-avf-a-05-0-UI /FEA=EST /CNT=12 /TID=Rn.22326.1 /TIER=ConsEnd /STK=5 /UG=Rn.22326 /UG_TITLE=ESTs BE110095 RGM domain family, member A Rgma 308739 NM_001107524 0001843 // neural tube closure // not recorded /// 0030510 // regulation of BMP signaling pathway // not recorded 0005783 // endoplasmic reticulum // not recorded /// 0009986 // cell surface // not recorded 1375850_at BG371810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371810 /DB_XREF=gi:13268347 /DB_XREF=UI-R-CV0-bri-e-11-0-UI.s1 /CLONE=UI-R-CV0-bri-e-11-0-UI /FEA=EST /CNT=12 /TID=Rn.39184.1 /TIER=ConsEnd /STK=5 /UG=Rn.39184 /UG_TITLE=ESTs BG371810 1375851_at AW916023 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916023 /DB_XREF=gi:8081738 /DB_XREF=EST347327 /CLONE=RGIDF03 /FEA=EST /CNT=17 /TID=Rn.6788.1 /TIER=ConsEnd /STK=5 /UG=Rn.6788 /UG_TITLE=ESTs, Weakly similar to KEAP_RAT KELCH-LIKE ECH-ASSOCIATED PROTEIN 1 (CYTOSOLIC INHIBITOR OF NRF2) (INRF2) (R.norvegicus) AW916023 kelch-like 8 (Drosophila) Klhl8 289457 NM_001105995 0005515 // protein binding // inferred from electronic annotation 1375852_at BM390399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390399 /DB_XREF=gi:18190452 /DB_XREF=UI-R-CN1-cjq-j-21-0-UI.s1 /CLONE=UI-R-CN1-cjq-j-21-0-UI /FEA=EST /CNT=16 /TID=Rn.9437.1 /TIER=ConsEnd /STK=5 /UG=Rn.9437 /UG_TITLE=ESTs BM390399 3-hydroxy-3-methylglutaryl-Coenzyme A reductase Hmgcr 25675 NM_013134 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from direct assay /// 0006695 // cholesterol biosynthetic process // not recorded /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008299 // isoprenoid biosynthetic process // inferred from direct assay /// 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation /// 0008542 // visual learning // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0010142 // farnesyl diphosphate biosynthetic process, mevalonate pathway // traceable author statement /// 0015936 // coenzyme A metabolic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // not recorded /// 0048643 // positive regulation of skeletal muscle tissue development // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004420 // hydroxymethylglutaryl-CoA reductase (NADPH) activity // inferred from electronic annotation /// 0004420 // hydroxymethylglutaryl-CoA reductase (NADPH) activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0042282 // hydroxymethylglutaryl-CoA reductase activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0050661 // NADP or NADPH binding // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation 1375853_at BF284358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284358 /DB_XREF=gi:11215428 /DB_XREF=EST448949 /CLONE=RGIEO68 /FEA=EST /CNT=14 /TID=Rn.22275.1 /TIER=ConsEnd /STK=5 /UG=Rn.22275 /UG_TITLE=ESTs BF284358 1375854_at AI175992 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175992 /DB_XREF=gi:3726630 /DB_XREF=EST219568 /CLONE=ROVBJ14 /FEA=EST /CNT=14 /TID=Rn.7750.1 /TIER=ConsEnd /STK=5 /UG=Rn.7750 /UG_TITLE=ESTs AI175992 catenin, beta-interacting protein 1 Ctnnbip1 503000 NM_001173388 /// XM_001075213 /// XM_001078135 /// XM_002729566 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0002528 // regulation of vascular permeability involved in acute inflammatory response // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0031333 // negative regulation of protein complex assembly // not recorded /// 0032091 // negative regulation of protein binding // not recorded /// 0043392 // negative regulation of DNA binding // not recorded /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0045657 // positive regulation of monocyte differentiation // not recorded /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0048662 // negative regulation of smooth muscle cell proliferation // not recorded /// 0060633 // negative regulation of transcription initiation from RNA polymerase II promoter // not recorded /// 0072201 // negative regulation of mesenchymal cell proliferation // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0034747 // Axin-APC-beta-catenin-GSK3B complex // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0070016 // armadillo repeat domain binding // not recorded 1375855_at AI171799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171799 /DB_XREF=gi:3711839 /DB_XREF=EST217781 /CLONE=RMUBQ86 /FEA=EST /CNT=13 /TID=Rn.2881.1 /TIER=ConsEnd /STK=5 /UG=Rn.2881 /UG_TITLE=ESTs AI171799 ependymin related protein 1 (zebrafish) Epdr1 291180 NM_001007625 0007160 // cell-matrix adhesion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded 0005509 // calcium ion binding // inferred from electronic annotation 1375856_at AI102258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102258 /DB_XREF=gi:3707059 /DB_XREF=EST211547 /CLONE=RBRCB22 /FEA=EST /CNT=13 /TID=Rn.7450.1 /TIER=ConsEnd /STK=5 /UG=Rn.7450 /UG_TITLE=ESTs, Moderately similar to BI54 MOUSE BRAIN PROTEIN I54 (M.musculus) AI102258 1375857_at AW917760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917760 /DB_XREF=gi:8083519 /DB_XREF=EST349064 /CLONE=RGIEH63 /FEA=EST /CNT=12 /TID=Rn.8225.1 /TIER=ConsEnd /STK=5 /UG=Rn.8225 /UG_TITLE=ESTs, Highly similar to T12449 hypothetical protein DKFZp564E1616.1 (H.sapiens) AW917760 myoferlin Myof 309499 NM_001191636 /// XM_001080627 /// XM_220031 0001778 // plasma membrane repair // not recorded /// 0034605 // cellular response to heat // not recorded 0005813 // centrosome // not recorded /// 0005886 // plasma membrane // not recorded /// 0005901 // caveola // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005543 // phospholipid binding // not recorded 1375858_at BI285715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285715 /DB_XREF=gi:14939637 /DB_XREF=UI-R-CT0s-cas-g-05-0-UI.s1 /CLONE=UI-R-CT0s-cas-g-05-0-UI /FEA=EST /CNT=11 /TID=Rn.3371.1 /TIER=ConsEnd /STK=5 /UG=Rn.3371 /UG_TITLE=ESTs, Weakly similar to T29643 hypothetical protein F49E8.1 - Caenorhabditis elegans (C.elegans) BI285715 tumor suppressor candidate 4 Tusc4 363138 NM_001025744 0033673 // negative regulation of kinase activity // not recorded 0004672 // protein kinase activity // not recorded /// 0005515 // protein binding // not recorded 1375859_a_at BM386823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386823 /DB_XREF=gi:18186871 /DB_XREF=UI-R-CN1-cjh-i-04-0-UI.s1 /CLONE=UI-R-CN1-cjh-i-04-0-UI /FEA=EST /CNT=11 /TID=Rn.869.1 /TIER=ConsEnd /STK=5 /UG=Rn.869 /UG_TITLE=ESTs BM386823 1375860_at AI011063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011063 /DB_XREF=gi:3224895 /DB_XREF=EST205514 /CLONE=RMUAX04 /FEA=EST /CNT=11 /TID=Rn.17253.1 /TIER=ConsEnd /STK=5 /UG=Rn.17253 /UG_TITLE=ESTs, Weakly similar to T03G11.6.p (Caenorhabditis elegans) (C.elegans) AI011063 1375861_at BE111332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111332 /DB_XREF=gi:8503437 /DB_XREF=UI-R-BJ1-ava-e-11-0-UI.s1 /CLONE=UI-R-BJ1-ava-e-11-0-UI /FEA=EST /CNT=15 /TID=Rn.7449.1 /TIER=ConsEnd /STK=5 /UG=Rn.7449 /UG_TITLE=ESTs BE111332 nucleosome assembly protein 1-like 5 Nap1l5 688843 NM_001044293 0006334 // nucleosome assembly // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375862_at BM384701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384701 /DB_XREF=gi:18184754 /DB_XREF=UI-R-CN1-cjl-b-09-0-UI.s2 /CLONE=UI-R-CN1-cjl-b-09-0-UI /FEA=EST /CNT=15 /TID=Rn.40541.1 /TIER=ConsEnd /STK=5 /UG=Rn.40541 /UG_TITLE=ESTs, Weakly similar to THROMBOSPONDIN 2 PRECURSOR (M.musculus) BM384701 peroxidasin homolog (Drosophila) Pxdn 554172 XM_001053103 /// XM_002726729 0006979 // response to oxidative stress // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0042744 // hydrogen peroxide catabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded 0005615 // extracellular space // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0031012 // extracellular matrix // not recorded 0004601 // peroxidase activity // inferred from electronic annotation /// 0004601 // peroxidase activity // not recorded /// 0005201 // extracellular matrix structural constituent // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0020037 // heme binding // not recorded 1375863_a_at AI411621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411621 /DB_XREF=gi:4255125 /DB_XREF=EST239915 /CLONE=ROVES49 /FEA=EST /CNT=14 /TID=Rn.2813.1 /TIER=ConsEnd /STK=5 /UG=Rn.2813 /UG_TITLE=ESTs AI411621 1375864_at BI274151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274151 /DB_XREF=gi:14884804 /DB_XREF=UI-R-CW0-bwf-e-12-0-UI.s1 /CLONE=UI-R-CW0-bwf-e-12-0-UI /FEA=EST /CNT=13 /TID=Rn.3265.1 /TIER=ConsEnd /STK=5 /UG=Rn.3265 /UG_TITLE=ESTs BI274151 coiled-coil and C2 domain containing 1B Cc2d1b 313478 XM_001067280 /// XM_233342 1375865_at BF408844 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408844 /DB_XREF=gi:11396819 /DB_XREF=UI-R-BS2-bet-a-12-0-UI.s1 /CLONE=UI-R-BS2-bet-a-12-0-UI /FEA=EST /CNT=13 /TID=Rn.18395.1 /TIER=ConsEnd /STK=5 /UG=Rn.18395 /UG_TITLE=ESTs BF408844 tight junction associated protein 1 Tjap1 316233 NM_001108203 0005515 // protein binding // not recorded 1375866_at BF396191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396191 /DB_XREF=gi:11381203 /DB_XREF=UI-R-BS2-bdv-g-08-0-UI.s1 /CLONE=UI-R-BS2-bdv-g-08-0-UI /FEA=EST /CNT=12 /TID=Rn.16981.1 /TIER=ConsEnd /STK=5 /UG=Rn.16981 /UG_TITLE=ESTs BF396191 1375867_at AW524493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524493 /DB_XREF=gi:7166878 /DB_XREF=UI-R-BO0-ahz-b-01-0-UI.s1 /CLONE=UI-R-BO0-ahz-b-01-0-UI /FEA=EST /CNT=12 /TID=Rn.2664.1 /TIER=ConsEnd /STK=5 /UG=Rn.2664 /UG_TITLE=ESTs AW524493 zinc finger and BTB domain containing 4 Zbtb4 287441 XM_001079524 /// XM_220612 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375868_at BI282767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282767 /DB_XREF=gi:14933862 /DB_XREF=UI-R-CW0s-cce-h-12-0-UI.s1 /CLONE=UI-R-CW0s-cce-h-12-0-UI /FEA=EST /CNT=11 /TID=Rn.29856.1 /TIER=ConsEnd /STK=5 /UG=Rn.29856 /UG_TITLE=ESTs BI282767 1375869_at AI603439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI603439 /DB_XREF=gi:4612600 /DB_XREF=UI-R-AC1-xu-d-02-0-UI.s1 /CLONE=UI-R-AC1-xu-d-02-0-UI /FEA=EST /CNT=11 /TID=Rn.24509.1 /TIER=ConsEnd /STK=5 /UG=Rn.24509 /UG_TITLE=ESTs AI603439 Unc-51 like kinase 1 (C. elegans) Ulk1 360827 NM_001108341 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded /// 0007409 // axonogenesis // not recorded /// 0008104 // protein localization // not recorded /// 0010506 // regulation of autophagy // not recorded /// 0021707 // cerebellar granule cell differentiation // not recorded /// 0021933 // radial glia guided migration of granule cell // not recorded /// 0031102 // neuron projection regeneration // inferred from mutant phenotype /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0031175 // neuron projection development // not recorded /// 0031623 // receptor internalization // not recorded /// 0046777 // protein autophosphorylation // not recorded /// 0048671 // negative regulation of collateral sprouting // not recorded /// 0048675 // axon extension // not recorded /// 0051386 // regulation of nerve growth factor receptor signaling pathway // not recorded 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // not recorded /// 0005776 // autophagic vacuole // not recorded /// 0005829 // cytosol // not recorded /// 0030659 // cytoplasmic vesicle membrane // not recorded /// 0043005 // neuron projection // not recorded /// 0043025 // neuronal cell body // not recorded /// 0070969 // ULK1-ATG13-FIP200 complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0032403 // protein complex binding // not recorded 1375870_a_at BF420140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420140 /DB_XREF=gi:11408129 /DB_XREF=UI-R-BJ2-bpj-d-06-0-UI.s1 /CLONE=UI-R-BJ2-bpj-d-06-0-UI /FEA=EST /CNT=11 /TID=Rn.12152.1 /TIER=ConsEnd /STK=5 /UG=Rn.12152 /UG_TITLE=ESTs, Highly similar to S53612 gene MSSP-2 protein (H.sapiens) BF420140 RNA binding motif, single stranded interacting protein 1 Rbms1 362138 NM_001012184 0006260 // DNA replication // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375871_at BM392047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392047 /DB_XREF=gi:18192100 /DB_XREF=UI-R-DO1-ckp-a-15-0-UI.s1 /CLONE=UI-R-DO1-ckp-a-15-0-UI /FEA=EST /CNT=11 /TID=Rn.12205.1 /TIER=ConsEnd /STK=5 /UG=Rn.12205 /UG_TITLE=ESTs, Highly similar to JC5026 UDP-galactose transporter related protein 1 - rat (R.norvegicus) BM392047 solute carrier family 35, member B1 Slc35b1 287642 NM_199081 0006810 // transport // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1375872_at AI144944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144944 /DB_XREF=gi:3666743 /DB_XREF=UI-R-BT0-pp-g-05-0-UI.s1 /CLONE=UI-R-BT0-pp-g-05-0-UI /FEA=EST /CNT=10 /TID=Rn.11901.1 /TIER=ConsEnd /STK=5 /UG=Rn.11901 /UG_TITLE=ESTs AI144944 Fukutin Fktn 362520 NM_001108667 0005794 // Golgi apparatus // not recorded /// 0005801 // cis-Golgi network // not recorded 1375873_at AI231506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231506 /DB_XREF=gi:3815386 /DB_XREF=EST228194 /CLONE=REMDL01 /FEA=EST /CNT=10 /TID=Rn.3216.1 /TIER=ConsEnd /STK=5 /UG=Rn.3216 /UG_TITLE=ESTs AI231506 similar to mKIAA1522 protein RGD1561149 500552 NM_001134629 1375874_at AA799680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799680 /DB_XREF=gi:2862635 /DB_XREF=EST189177 /CLONE=RHEAD95 /FEA=EST /CNT=10 /TID=Rn.3424.1 /TIER=ConsEnd /STK=5 /UG=Rn.3424 /UG_TITLE=ESTs AA799680 similar to cDNA sequence BC013529 RGD1309759 361448 XM_001059157 /// XM_341726 1375875_at BF415701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415701 /DB_XREF=gi:11403690 /DB_XREF=UI-R-CA1-bkd-f-09-0-UI.s1 /CLONE=UI-R-CA1-bkd-f-09-0-UI /FEA=EST /CNT=10 /TID=Rn.63144.1 /TIER=ConsEnd /STK=5 /UG=Rn.63144 /UG_TITLE=ESTs BF415701 1375876_at AI177929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177929 /DB_XREF=gi:3728567 /DB_XREF=EST221580 /CLONE=RPLCI70 /FEA=EST /CNT=10 /TID=Rn.22734.1 /TIER=ConsEnd /STK=5 /UG=Rn.22734 /UG_TITLE=ESTs, Weakly similar to minichromosome maintenance deficient (S. cerevisiae) 3-associate; nuclear protein GANP (Mus musculus) (M.musculus) AI177929 similar to RIKEN cDNA 2410004C24 RGD1308049 293690 XM_002725779 /// XM_002728860 1375877_at AI454612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454612 /DB_XREF=gi:4294944 /DB_XREF=UI-R-A0-aq-g-12-0-UI.s1 /CLONE=UI-R-A0-aq-g-12-0-UI /FEA=EST /CNT=18 /TID=Rn.17138.1 /TIER=ConsEnd /STK=5 /UG=Rn.17138 /UG_TITLE=ESTs AI454612 synaptotagmin IV Syt4 64440 NM_031693 0006810 // transport // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // not recorded /// 0007269 // neurotransmitter secretion // non-traceable author statement /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0017156 // calcium ion-dependent exocytosis // non-traceable author statement 0008021 // synaptic vesicle // non-traceable author statement /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005215 // transporter activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 1375878_at BE102596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102596 /DB_XREF=gi:8494695 /DB_XREF=UI-R-BT1-aqo-g-07-0-UI.s1 /CLONE=UI-R-BT1-aqo-g-07-0-UI /FEA=EST /CNT=15 /TID=Rn.22293.1 /TIER=ConsEnd /STK=5 /UG=Rn.22293 /UG_TITLE=ESTs, Highly similar to T12506 hypothetical protein DKFZp434C212.1 (H.sapiens) BE102596 GTPase activating protein and VPS9 domains 1 Gapvd1 311880 XM_001078902 /// XM_231161 0007165 // signal transduction // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation /// 0051223 // regulation of protein transport // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0032794 // GTPase activating protein binding // not recorded 1375879_at BE111762 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111762 /DB_XREF=gi:8503867 /DB_XREF=UI-R-BJ1-avx-e-07-0-UI.s1 /CLONE=UI-R-BJ1-avx-e-07-0-UI /FEA=EST /CNT=11 /TID=Rn.15033.1 /TIER=ConsEnd /STK=5 /UG=Rn.15033 /UG_TITLE=ESTs BE111762 1375880_at AI170384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170384 /DB_XREF=gi:3710424 /DB_XREF=EST216310 /CLONE=RLUCH64 /FEA=EST /CNT=11 /TID=Rn.7978.1 /TIER=ConsEnd /STK=5 /UG=Rn.7978 /UG_TITLE=ESTs AI170384 amyloid beta precursor protein (cytoplasmic tail) binding protein 2 Appbp2 303396 NM_001100969 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0046907 // intracellular transport // inferred from electronic annotation /// 0046907 // intracellular transport // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375881_at AI170442 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170442 /DB_XREF=gi:3710482 /DB_XREF=EST216369 /CLONE=RLUCN39 /FEA=EST /CNT=11 /TID=Rn.9199.1 /TIER=ConsEnd /STK=5 /UG=Rn.9199 /UG_TITLE=ESTs, Highly similar to JE0223 destrin - rat (R.norvegicus) AI170442 destrin Dstn 502674 NM_001033666 0005622 // intracellular // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation 1375882_at BG380745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380745 /DB_XREF=gi:13305217 /DB_XREF=UI-R-CT0-bua-h-10-0-UI.s1 /CLONE=UI-R-CT0-bua-h-10-0-UI /FEA=EST /CNT=11 /TID=Rn.18941.1 /TIER=ConsEnd /STK=5 /UG=Rn.18941 /UG_TITLE=ESTs BG380745 1375883_at BI298766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298766 /DB_XREF=gi:14975046 /DB_XREF=UI-R-CV2-chn-d-12-0-UI.s1 /CLONE=UI-R-CV2-chn-d-12-0-UI /FEA=EST /CNT=10 /TID=Rn.59101.1 /TIER=ConsEnd /STK=5 /UG=Rn.59101 /UG_TITLE=ESTs, Weakly similar to T13616 hypothetical protein EG:8D8.8 - fruit fly (D.melanogaster) BI298766 zinc finger, CCHC domain containing 6 Zcchc6 501515 XM_001060307 /// XM_001066334 0031123 // RNA 3'-end processing // not recorded /// 0071044 // histone mRNA catabolic process // not recorded 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050265 // RNA uridylyltransferase activity // not recorded 1375884_at AW520742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520742 /DB_XREF=gi:7163120 /DB_XREF=UI-R-BJ0p-agh-a-04-0-UI.s1 /CLONE=UI-R-BJ0p-agh-a-04-0-UI /FEA=EST /CNT=10 /TID=Rn.19128.1 /TIER=ConsEnd /STK=5 /UG=Rn.19128 /UG_TITLE=ESTs AW520742 similar to Hypothetical protein BC014729 MGC105560 500941 NM_001024357 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 1375885_at AA925482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925482 /DB_XREF=gi:4236673 /DB_XREF=UI-R-A1-ep-b-02-0-UI.s1 /CLONE=UI-R-A1-ep-b-02-0-UI /FEA=EST /CNT=10 /TID=Rn.22938.1 /TIER=ConsEnd /STK=5 /UG=Rn.22938 /UG_TITLE=ESTs, Highly similar to MTR1_MOUSE MYOTUBULARIN-RELATED PROTEIN 1 (M.musculus) AA925482 myotubularin related protein 1 Mtmr1 317296 NM_001191725 /// XM_001059230 /// XM_228644 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded 0004438 // phosphatidylinositol-3-phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1375886_at AI236778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236778 /DB_XREF=gi:3830284 /DB_XREF=EST233340 /CLONE=ROVDK41 /FEA=EST /CNT=10 /TID=Rn.8314.1 /TIER=ConsEnd /STK=5 /UG=Rn.8314 /UG_TITLE=ESTs AI236778 1375887_at BI282089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282089 /DB_XREF=gi:14932488 /DB_XREF=UI-R-CU0s-cbw-d-10-0-UI.s1 /CLONE=UI-R-CU0s-cbw-d-10-0-UI /FEA=EST /CNT=10 /TID=Rn.7439.1 /TIER=ConsEnd /STK=5 /UG=Rn.7439 /UG_TITLE=ESTs BI282089 1375888_at BE100456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100456 /DB_XREF=gi:8492349 /DB_XREF=UI-R-BJ1-atv-f-08-0-UI.s1 /CLONE=UI-R-BJ1-atv-f-08-0-UI /FEA=EST /CNT=10 /TID=Rn.37595.1 /TIER=ConsEnd /STK=5 /UG=Rn.37595 /UG_TITLE=ESTs BE100456 similar to SET binding factor 2 RGD1559442 691042 NM_001134970 0016311 // dephosphorylation // inferred from electronic annotation 0016791 // phosphatase activity // inferred from electronic annotation 1375889_at AI228536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228536 /DB_XREF=gi:4135360 /DB_XREF=EST225231 /CLONE=RBRCW17 /FEA=EST /CNT=10 /TID=Rn.14635.1 /TIER=ConsEnd /STK=5 /UG=Rn.14635 /UG_TITLE=ESTs AI228536 spermine synthase Sms 363469 NM_001033899 0006597 // spermine biosynthetic process // inferred from electronic annotation /// 0008215 // spermine metabolic process // not recorded 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016768 // spermine synthase activity // inferred from electronic annotation /// 0016768 // spermine synthase activity // not recorded 1375890_at BI296994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296994 /DB_XREF=gi:14961966 /DB_XREF=UI-R-DK0-cgk-a-04-0-UI.s1 /CLONE=UI-R-DK0-cgk-a-04-0-UI /FEA=EST /CNT=10 /TID=Rn.12008.1 /TIER=ConsEnd /STK=5 /UG=Rn.12008 /UG_TITLE=ESTs BI296994 dapper, antagonist of beta-catenin, homolog 3 (Xenopus laevis) Dact3 499088 NM_001191947 /// XM_002725536 /// XM_574375 1375891_at BG379665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379665 /DB_XREF=gi:13304102 /DB_XREF=UI-R-CS0-btm-c-08-0-UI.s1 /CLONE=UI-R-CS0-btm-c-08-0-UI /FEA=EST /CNT=10 /TID=Rn.7243.1 /TIER=ConsEnd /STK=5 /UG=Rn.7243 /UG_TITLE=ESTs, Highly similar to ring finger protein 1 (Homo sapiens) (H.sapiens) BG379665 ring finger protein 1 Ring1 309626 NM_212549 0006350 // transcription // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016574 // histone ubiquitination // inferred from electronic annotation /// 0016574 // histone ubiquitination // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // not recorded 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0000151 // ubiquitin ligase complex // not recorded /// 0001739 // sex chromatin // inferred from electronic annotation /// 0001739 // sex chromatin // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016604 // nuclear body // not recorded /// 0016604 // nuclear body // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation /// 0031519 // PcG protein complex // inferred from electronic annotation /// 0031519 // PcG protein complex // not recorded 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375892_at BF559812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559812 /DB_XREF=gi:11669542 /DB_XREF=UI-R-E0-bo-g-06-0-UI.r1 /CLONE=UI-R-E0-bo-g-06-0-UI /FEA=EST /CNT=9 /TID=Rn.7762.1 /TIER=ConsEnd /STK=5 /UG=Rn.7762 /UG_TITLE=ESTs BF559812 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R) Elavl1 363854 NM_001108848 0048255 // mRNA stabilization // not recorded /// 0070935 // 3'-UTR-mediated mRNA stabilization // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0042802 // identical protein binding // not recorded 1375893_a_at BI296175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296175 /DB_XREF=gi:14960353 /DB_XREF=UI-R-DK0-cex-c-01-0-UI.s1 /CLONE=UI-R-DK0-cex-c-01-0-UI /FEA=EST /CNT=9 /TID=Rn.18516.1 /TIER=ConsEnd /STK=5 /UG=Rn.18516 /UG_TITLE=ESTs BI296175 1375894_at AI716087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716087 /DB_XREF=gi:5033388 /DB_XREF=UI-R-Y0-abd-e-03-0-UI.s1 /CLONE=UI-R-Y0-abd-e-03-0-UI /FEA=EST /CNT=9 /TID=Rn.25212.1 /TIER=ConsEnd /STK=5 /UG=Rn.25212 /UG_TITLE=ESTs AI716087 leucine zipper transcription factor-like 1 Lztfl1 316102 NM_001024266 1375895_at BI275908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275908 /DB_XREF=gi:14920306 /DB_XREF=UI-R-CX0-bxh-h-10-0-UI.s1 /CLONE=UI-R-CX0-bxh-h-10-0-UI /FEA=EST /CNT=9 /TID=Rn.42100.1 /TIER=ConsEnd /STK=5 /UG=Rn.42100 /UG_TITLE=ESTs, Weakly similar to S38061 threonine dehydratase (EC 4.2.1.16) YKL218c (similarity) - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BI275908 rCG34104-like LOC100360406 100360406 XM_002724518 /// XM_002727774 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1375896_at BM392055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392055 /DB_XREF=gi:18192108 /DB_XREF=UI-R-DO1-ckp-c-11-0-UI.s1 /CLONE=UI-R-DO1-ckp-c-11-0-UI /FEA=EST /CNT=9 /TID=Rn.17696.1 /TIER=ConsEnd /STK=5 /UG=Rn.17696 /UG_TITLE=ESTs BM392055 STE20-related kinase adaptor beta Stradb 501146 NM_001109307 0000902 // cell morphogenesis // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006611 // protein export from nucleus // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0007254 // JNK cascade // not recorded /// 0016310 // phosphorylation // not recorded /// 0032147 // activation of protein kinase activity // not recorded /// 0046320 // regulation of fatty acid oxidation // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0004672 // protein kinase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1375897_at AI101372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101372 /DB_XREF=gi:3706282 /DB_XREF=EST210661 /CLONE=RBRBN50 /FEA=EST /CNT=9 /TID=Rn.24732.1 /TIER=ConsEnd /STK=5 /UG=Rn.24732 /UG_TITLE=ESTs AI101372 1375898_at AW252379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252379 /DB_XREF=gi:6595970 /DB_XREF=UI-R-BJ0-aeh-g-01-0-UI.s1 /CLONE=UI-R-BJ0-aeh-g-01-0-UI /FEA=EST /CNT=9 /TID=Rn.3429.1 /TIER=ConsEnd /STK=5 /UG=Rn.3429 /UG_TITLE=ESTs AW252379 Similar to RNA binding protein gene with multiple splicing RGD1561067 498642 XM_001059526 /// XM_573923 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1375899_at BF283736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283736 /DB_XREF=gi:11214806 /DB_XREF=EST448327 /CLONE=RGIEG18 /FEA=EST /CNT=9 /TID=Rn.17542.1 /TIER=ConsEnd /STK=5 /UG=Rn.17542 /UG_TITLE=ESTs BF283736 1375900_at AI236084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236084 /DB_XREF=gi:3829590 /DB_XREF=EST232646 /CLONE=ROVDB21 /FEA=EST /CNT=9 /TID=Rn.22307.1 /TIER=ConsEnd /STK=5 /UG=Rn.22307 /UG_TITLE=ESTs, Moderately similar to 41BB MOUSE 4-1BB LIGAND RECEPTOR PRECURSOR (M.musculus) AI236084 tumor necrosis factor receptor superfamily, member 9 Tnfrsf9 500590 NM_001025773 0007165 // signal transduction // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1375901_at AI178527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178527 /DB_XREF=gi:4135079 /DB_XREF=EST222202 /CLONE=RPLCS24 /FEA=EST /CNT=9 /TID=Rn.7541.1 /TIER=ConsEnd /STK=5 /UG=Rn.7541 /UG_TITLE=ESTs AI178527 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 Ddx21 317399 NM_001037201 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1375902_at AI231065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231065 /DB_XREF=gi:3814945 /DB_XREF=EST227753 /CLONE=REMDE81 /FEA=EST /CNT=9 /TID=Rn.24546.1 /TIER=ConsEnd /STK=5 /UG=Rn.24546 /UG_TITLE=ESTs AI231065 1375903_a_at AI012344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012344 /DB_XREF=gi:4133620 /DB_XREF=EST206795 /CLONE=RPLAW02 /FEA=EST /CNT=1 /TID=Rn.7352.3 /TIER=ConsEnd /STK=1 /UG=Rn.7352 /UG_TITLE=ESTs, Weakly similar to C54H2.3.p (Caenorhabditis elegans) (C.elegans) AI012344 YY1 associated factor 2 Yaf2 690262 NM_001134871 0016481 // negative regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003713 // transcription coactivator activity // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1375904_at AI011285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011285 /DB_XREF=gi:4133385 /DB_XREF=EST205736 /CLONE=ROVAS89 /FEA=EST /CNT=9 /TID=Rn.16505.1 /TIER=ConsEnd /STK=5 /UG=Rn.16505 /UG_TITLE=ESTs AI011285 1375905_at AI412746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412746 /DB_XREF=gi:4256250 /DB_XREF=EST241045 /CLONE=RBRDS92 /FEA=EST /CNT=9 /TID=Rn.24249.1 /TIER=ConsEnd /STK=5 /UG=Rn.24249 /UG_TITLE=ESTs AI412746 tweety homolog 1 (Drosophila) Ttyh1 292597 NM_001106225 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0031589 // cell-substrate adhesion // not recorded /// 0046847 // filopodium assembly // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031527 // filopodium membrane // not recorded /// 0032433 // filopodium tip // not recorded /// 0034707 // chloride channel complex // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation 1375906_at BM389920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389920 /DB_XREF=gi:18189978 /DB_XREF=UI-R-CN1-cji-n-04-0-UI.s1 /CLONE=UI-R-CN1-cji-n-04-0-UI /FEA=EST /CNT=9 /TID=Rn.23163.1 /TIER=ConsEnd /STK=5 /UG=Rn.23163 /UG_TITLE=ESTs BM389920 hypothetical protein LOC683034 LOC683034 683034 XM_001061393 1375907_at BG380458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380458 /DB_XREF=gi:13304930 /DB_XREF=UI-R-CT0-btx-e-04-0-UI.s1 /CLONE=UI-R-CT0-btx-e-04-0-UI /FEA=EST /CNT=9 /TID=Rn.16141.1 /TIER=ConsEnd /STK=5 /UG=Rn.16141 /UG_TITLE=ESTs BG380458 activating signal cointegrator 1 complex subunit 1 Ascc1 294512 NM_001007632 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation 1375908_at BI282616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282616 /DB_XREF=gi:14933563 /DB_XREF=UI-R-CW0s-ccd-b-05-0-UI.s1 /CLONE=UI-R-CW0s-ccd-b-05-0-UI /FEA=EST /CNT=11 /TID=Rn.8193.1 /TIER=ConsEnd /STK=5 /UG=Rn.8193 /UG_TITLE=ESTs BI282616 myelin protein zero-like 2 Mpzl2 300679 NM_001106818 0016020 // membrane // inferred from electronic annotation 1375909_at BI285792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285792 /DB_XREF=gi:14939798 /DB_XREF=UI-R-CX0s-cct-h-10-0-UI.s1 /CLONE=UI-R-CX0s-cct-h-10-0-UI /FEA=EST /CNT=11 /TID=Rn.9557.1 /TIER=ConsEnd /STK=5 /UG=Rn.9557 /UG_TITLE=ESTs, Moderately similar to GTM1 RAT GLUTATHIONE S-TRANSFERASE YB1 (R.norvegicus) BI285792 glutathione S-transferase mu 4 Gstm4 499689 NM_001024304 0008152 // metabolic process // inferred from electronic annotation /// 0018916 // nitrobenzene metabolic process // not recorded /// 0042178 // xenobiotic catabolic process // not recorded 0004364 // glutathione transferase activity // inferred from electronic annotation /// 0004364 // glutathione transferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation 1375910_at AA874943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA874943 /DB_XREF=gi:4230825 /DB_XREF=UI-R-E0-ci-e-02-0-UI.s1 /CLONE=UI-R-E0-ci-e-02-0-UI /FEA=EST /CNT=11 /TID=Rn.4040.1 /TIER=ConsEnd /STK=5 /UG=Rn.4040 /UG_TITLE=ESTs, Moderately similar to T46465 hypothetical protein DKFZp434A0530.1 (H.sapiens) AA874943 CDC42 effector protein (Rho GTPase binding) 3 Cdc42ep3 313838 NM_001048044 0015629 // actin cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1375911_at AI171772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171772 /DB_XREF=gi:3711812 /DB_XREF=EST217754 /CLONE=RMUBQ49 /FEA=EST /CNT=11 /TID=Rn.6449.1 /TIER=ConsEnd /STK=5 /UG=Rn.6449 /UG_TITLE=ESTs AI171772 glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) Gpcpd1 362219 NM_198779 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006071 // glycerol metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0008889 // glycerophosphodiester phosphodiesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation 1375912_a_at BI285430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285430 /DB_XREF=gi:14939060 /DB_XREF=UI-R-DD0-caa-a-05-0-UI.s1 /CLONE=UI-R-DD0-caa-a-05-0-UI /FEA=EST /CNT=10 /TID=Rn.12691.1 /TIER=ConsEnd /STK=5 /UG=Rn.12691 /UG_TITLE=ESTs BI285430 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2) Galnt2 292090 NM_001106196 0002378 // immunoglobulin biosynthetic process // not recorded /// 0002378 // immunoglobulin biosynthetic process // inferred from electronic annotation /// 0018242 // protein O-linked glycosylation via serine // not recorded /// 0018242 // protein O-linked glycosylation via serine // inferred from electronic annotation /// 0018243 // protein O-linked glycosylation via threonine // not recorded /// 0018243 // protein O-linked glycosylation via threonine // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005795 // Golgi stack // not recorded /// 0005795 // Golgi stack // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // not recorded /// 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030145 // manganese ion binding // not recorded /// 0030145 // manganese ion binding // inferred from electronic annotation 1375913_at BI285430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285430 /DB_XREF=gi:14939060 /DB_XREF=UI-R-DD0-caa-a-05-0-UI.s1 /CLONE=UI-R-DD0-caa-a-05-0-UI /FEA=EST /CNT=10 /TID=Rn.12691.1 /TIER=ConsEnd /STK=5 /UG=Rn.12691 /UG_TITLE=ESTs BI285430 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2) Galnt2 292090 NM_001106196 0002378 // immunoglobulin biosynthetic process // not recorded /// 0002378 // immunoglobulin biosynthetic process // inferred from electronic annotation /// 0018242 // protein O-linked glycosylation via serine // not recorded /// 0018242 // protein O-linked glycosylation via serine // inferred from electronic annotation /// 0018243 // protein O-linked glycosylation via threonine // not recorded /// 0018243 // protein O-linked glycosylation via threonine // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005795 // Golgi stack // not recorded /// 0005795 // Golgi stack // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // not recorded /// 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030145 // manganese ion binding // not recorded /// 0030145 // manganese ion binding // inferred from electronic annotation 1375914_at BI285504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285504 /DB_XREF=gi:14939214 /DB_XREF=UI-R-DD0-caa-h-07-0-UI.s1 /CLONE=UI-R-DD0-caa-h-07-0-UI /FEA=EST /CNT=10 /TID=Rn.3134.1 /TIER=ConsEnd /STK=5 /UG=Rn.3134 /UG_TITLE=ESTs BI285504 KRAB-A domain containing 1 Krba1 362358 XM_001053983 /// XM_342681 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation 1375915_at AI073247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073247 /DB_XREF=gi:3399441 /DB_XREF=UI-R-Y0-mb-a-07-0-UI.s1 /CLONE=UI-R-Y0-mb-a-07-0-UI /FEA=EST /CNT=10 /TID=Rn.15226.1 /TIER=ConsEnd /STK=5 /UG=Rn.15226 /UG_TITLE=ESTs AI073247 interleukin-1 receptor-associated kinase 1 binding protein 1 Irak1bp1 300862 NM_001106843 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded /// 0007249 // I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1375916_at AA955163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955163 /DB_XREF=gi:4234246 /DB_XREF=UI-R-A1-du-a-04-0-UI.s1 /CLONE=UI-R-A1-du-a-04-0-UI /FEA=EST /CNT=9 /TID=Rn.8694.1 /TIER=ConsEnd /STK=5 /UG=Rn.8694 /UG_TITLE=ESTs AA955163 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 Pcmtd2 311726 NM_001107810 0006464 // protein modification process // inferred from electronic annotation 0004719 // protein-L-isoaspartate (D-aspartate) O-methyltransferase activity // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1375917_at BF282961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282961 /DB_XREF=gi:11214031 /DB_XREF=EST447552 /CLONE=RGIDV57 /FEA=EST /CNT=9 /TID=Rn.24628.1 /TIER=ConsEnd /STK=5 /UG=Rn.24628 /UG_TITLE=ESTs, Moderately similar to B53434 cell surface glycoprotein gp49B form 2 precursor - mouse (M.musculus) BF282961 leukocyte immunoglobulin-like receptor, subfamily B, member 4 Lilrb4 292594 NM_001013894 1375918_at AW917662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917662 /DB_XREF=gi:8083418 /DB_XREF=EST348966 /CLONE=RGIEG56 /FEA=EST /CNT=9 /TID=Rn.23023.1 /TIER=ConsEnd /STK=5 /UG=Rn.23023 /UG_TITLE=ESTs, Weakly similar to T24428 hypothetical protein T04A8.10 - Caenorhabditis elegans (C.elegans) AW917662 zinc finger protein 830 Znf830 497967 NM_001037360 0001832 // blastocyst growth // inferred from electronic annotation /// 0001832 // blastocyst growth // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007049 // cell cycle // not recorded /// 0007067 // mitosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0046872 // metal ion binding // inferred from electronic annotation 1375919_at AW528982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528982 /DB_XREF=gi:7171396 /DB_XREF=UI-R-BU0-amx-g-10-0-UI.s1 /CLONE=UI-R-BU0-amx-g-10-0-UI /FEA=EST /CNT=9 /TID=Rn.35457.1 /TIER=ConsEnd /STK=5 /UG=Rn.35457 /UG_TITLE=ESTs, Weakly similar to S44346 RAD23 protein homolog (H.sapiens) AW528982 Ubiquilin 2 Ubqln2 317396 NM_001108251 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded 0005488 // binding // inferred from electronic annotation 1375920_at AI406305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406305 /DB_XREF=gi:4249809 /DB_XREF=EST234591 /CLONE=RBRDM50 /FEA=EST /CNT=9 /TID=Rn.34402.1 /TIER=ConsEnd /STK=5 /UG=Rn.34402 /UG_TITLE=ESTs, Highly similar to B46132 c-Jun leucine zipper interactive (M.musculus) AI406305 pleckstrin homology domain containing, family O member 1 Plekho1 310674 NM_001025119 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1375921_at BF281577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281577 /DB_XREF=gi:11212647 /DB_XREF=EST446168 /CLONE=RGIAN14 /FEA=EST /CNT=9 /TID=Rn.24487.1 /TIER=ConsEnd /STK=5 /UG=Rn.24487 /UG_TITLE=ESTs BF281577 Reticulocalbin 1, EF-hand calcium binding domain Rcn1 362182 NM_001108586 0005509 // calcium ion binding // inferred from electronic annotation 1375922_at BI296988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296988 /DB_XREF=gi:14961954 /DB_XREF=UI-R-DK0-cgj-h-08-0-UI.s1 /CLONE=UI-R-DK0-cgj-h-08-0-UI /FEA=EST /CNT=9 /TID=Rn.1309.1 /TIER=ConsEnd /STK=5 /UG=Rn.1309 /UG_TITLE=ESTs BI296988 COX15 homolog, cytochrome c oxidase assembly protein (yeast) Cox15 309391 NM_001033699 0006461 // protein complex assembly // inferred from electronic annotation /// 0006784 // heme a biosynthetic process // inferred from electronic annotation /// 0006784 // heme a biosynthetic process // not recorded /// 0008535 // respiratory chain complex IV assembly // not recorded 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0044429 // mitochondrial part // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004129 // cytochrome-c oxidase activity // not recorded 1375923_at AI406628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406628 /DB_XREF=gi:4250132 /DB_XREF=EST234915 /CLONE=RBRDN66 /FEA=EST /CNT=9 /TID=Rn.22985.1 /TIER=ConsEnd /STK=5 /UG=Rn.22985 /UG_TITLE=ESTs AI406628 1375924_at AA892778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892778 /DB_XREF=gi:3019657 /DB_XREF=EST196581 /CLONE=RKIAX21 /FEA=EST /CNT=9 /TID=Rn.14876.1 /TIER=ConsEnd /STK=5 /UG=Rn.14876 /UG_TITLE=ESTs AA892778 1375925_at BE113449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113449 /DB_XREF=gi:8505554 /DB_XREF=UI-R-BJ1-awl-d-12-0-UI.s1 /CLONE=UI-R-BJ1-awl-d-12-0-UI /FEA=EST /CNT=8 /TID=Rn.40519.1 /TIER=ConsEnd /STK=5 /UG=Rn.40519 /UG_TITLE=ESTs BE113449 1375926_at BG372589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372589 /DB_XREF=gi:13269126 /DB_XREF=UI-R-CV1-brv-h-09-0-UI.s1 /CLONE=UI-R-CV1-brv-h-09-0-UI /FEA=EST /CNT=8 /TID=Rn.22507.1 /TIER=ConsEnd /STK=5 /UG=Rn.22507 /UG_TITLE=ESTs BG372589 1375927_at BE100774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100774 /DB_XREF=gi:8492672 /DB_XREF=UI-R-BJ1-auf-c-02-0-UI.s1 /CLONE=UI-R-BJ1-auf-c-02-0-UI /FEA=EST /CNT=8 /TID=Rn.12898.1 /TIER=ConsEnd /STK=5 /UG=Rn.12898 /UG_TITLE=ESTs BE100774 1375928_at BI285329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285329 /DB_XREF=gi:14938851 /DB_XREF=UI-R-DB0-byy-g-07-0-UI.s1 /CLONE=UI-R-DB0-byy-g-07-0-UI /FEA=EST /CNT=8 /TID=Rn.8879.1 /TIER=ConsEnd /STK=5 /UG=Rn.8879 /UG_TITLE=ESTs BI285329 SET domain containing (lysine methyltransferase) 8 Setd8 689820 XM_001072149 /// XM_002724818 1375929_at BI289109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289109 /DB_XREF=gi:14946340 /DB_XREF=UI-R-DK0-cfe-f-02-0-UI.s1 /CLONE=UI-R-DK0-cfe-f-02-0-UI /FEA=EST /CNT=8 /TID=Rn.30696.1 /TIER=ConsEnd /STK=5 /UG=Rn.30696 /UG_TITLE=ESTs BI289109 max binding protein Mnt 287521 NM_001105807 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007569 // cell aging // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1375930_a_at BE109649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109649 /DB_XREF=gi:8501754 /DB_XREF=UI-R-BJ1-avq-e-11-0-UI.s1 /CLONE=UI-R-BJ1-avq-e-11-0-UI /FEA=EST /CNT=8 /TID=Rn.25095.1 /TIER=ConsEnd /STK=5 /UG=Rn.25095 /UG_TITLE=ESTs, Weakly similar to Zinc finger, C3HC4 type (RING finger) (Caenorhabditis elegans) (C.elegans) BE109649 ring finger protein 207 Rnf207 691246 XM_001075996 /// XM_002726663 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375931_at BE109649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109649 /DB_XREF=gi:8501754 /DB_XREF=UI-R-BJ1-avq-e-11-0-UI.s1 /CLONE=UI-R-BJ1-avq-e-11-0-UI /FEA=EST /CNT=8 /TID=Rn.25095.1 /TIER=ConsEnd /STK=5 /UG=Rn.25095 /UG_TITLE=ESTs, Weakly similar to Zinc finger, C3HC4 type (RING finger) (Caenorhabditis elegans) (C.elegans) BE109649 ring finger protein 207 Rnf207 691246 XM_001075996 /// XM_002726663 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375932_at BF284677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284677 /DB_XREF=gi:11215747 /DB_XREF=EST449268 /CLONE=RGIEU79 /FEA=EST /CNT=8 /TID=Rn.2145.1 /TIER=ConsEnd /STK=5 /UG=Rn.2145 /UG_TITLE=ESTs BF284677 1375933_at BM392116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392116 /DB_XREF=gi:18192169 /DB_XREF=UI-R-DO1-ckp-o-07-0-UI.s1 /CLONE=UI-R-DO1-ckp-o-07-0-UI /FEA=EST /CNT=8 /TID=Rn.37791.1 /TIER=ConsEnd /STK=5 /UG=Rn.37791 /UG_TITLE=ESTs, Weakly similar to S26689 hypothetical protein hc1 - mouse (M.musculus) BM392116 claudin 2 Cldn2 300920 NM_001106846 0016338 // calcium-independent cell-cell adhesion // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0005923 // tight junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1375934_at BE112948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112948 /DB_XREF=gi:8505053 /DB_XREF=UI-R-BJ1-awa-f-11-0-UI.s1 /CLONE=UI-R-BJ1-awa-f-11-0-UI /FEA=EST /CNT=8 /TID=Rn.7002.1 /TIER=ConsEnd /STK=5 /UG=Rn.7002 /UG_TITLE=ESTs BE112948 1375935_at AI008672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008672 /DB_XREF=gi:4132924 /DB_XREF=EST203123 /CLONE=REMBB48 /FEA=EST /CNT=8 /TID=Rn.24162.1 /TIER=ConsEnd /STK=5 /UG=Rn.24162 /UG_TITLE=ESTs, Moderately similar to 1920362A tumor suppressor gene mgl1 (M.musculus) AI008672 1375936_at BI279663 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279663 /DB_XREF=gi:14927694 /DB_XREF=UI-R-DE0-caf-b-12-0-UI.s1 /CLONE=UI-R-DE0-caf-b-12-0-UI /FEA=EST /CNT=8 /TID=Rn.3954.1 /TIER=ConsEnd /STK=5 /UG=Rn.3954 /UG_TITLE=ESTs BI279663 desmocollin 2 Dsc2 291760 NM_001033688 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1375937_a_at BE104344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104344 /DB_XREF=gi:8496444 /DB_XREF=UI-R-BX0-arn-f-12-0-UI.s1 /CLONE=UI-R-BX0-arn-f-12-0-UI /FEA=EST /CNT=8 /TID=Rn.36317.1 /TIER=ConsEnd /STK=5 /UG=Rn.36317 /UG_TITLE=ESTs BE104344 centromere protein T Cenpt 307805 NM_001024257 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1375938_at BF411424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411424 /DB_XREF=gi:11399406 /DB_XREF=UI-R-CN0-bmk-b-12-0-UI.s1 /CLONE=UI-R-CN0-bmk-b-12-0-UI /FEA=EST /CNT=8 /TID=Rn.11535.1 /TIER=ConsEnd /STK=5 /UG=Rn.11535 /UG_TITLE=ESTs BF411424 coiled-coil domain containing 12 Ccdc12 363151 NM_001108783 1375939_at BM391922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391922 /DB_XREF=gi:18191975 /DB_XREF=UI-R-DM1-ckc-f-23-0-UI.s2 /CLONE=UI-R-DM1-ckc-f-23-0-UI /FEA=EST /CNT=8 /TID=Rn.12325.1 /TIER=ConsEnd /STK=5 /UG=Rn.12325 /UG_TITLE=ESTs BM391922 similar to GC-rich sequence DNA-binding factor homolog LOC681004 681004 XM_001057305 /// XM_002724693 0005829 // cytosol // not recorded 1375940_a_at BF396656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396656 /DB_XREF=gi:11381635 /DB_XREF=UI-R-BS2-bea-f-04-0-UI.s1 /CLONE=UI-R-BS2-bea-f-04-0-UI /FEA=EST /CNT=8 /TID=Rn.11433.1 /TIER=ConsEnd /STK=5 /UG=Rn.11433 /UG_TITLE=ESTs BF396656 potassium channel tetramerisation domain containing 17 Kctd17 300317 NM_001134529 0006813 // potassium ion transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1375941_at BI292120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292120 /DB_XREF=gi:14952313 /DB_XREF=UI-R-DN0-ciu-j-06-0-UI.s1 /CLONE=UI-R-DN0-ciu-j-06-0-UI /FEA=EST /CNT=8 /TID=Rn.21473.1 /TIER=ConsEnd /STK=5 /UG=Rn.21473 /UG_TITLE=ESTs BI292120 BAI1-associated protein 2-like 1 Baiap2l1 304282 NM_001034140 0007165 // signal transduction // inferred from electronic annotation /// 0046847 // filopodium assembly // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008093 // cytoskeletal adaptor activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation 1375942_at AA945803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945803 /DB_XREF=gi:3105719 /DB_XREF=EST201302 /CLONE=RLUAU43 /FEA=EST /CNT=8 /TID=Rn.38.1 /TIER=ConsEnd /STK=5 /UG=Rn.38 /UG_TITLE=ESTs, Highly similar to FUS1 MOUSE FUS1 PROTEIN (M.musculus) AA945803 1375943_at BI288873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288873 /DB_XREF=gi:14945876 /DB_XREF=UI-R-DK0-cdf-h-07-0-UI.s1 /CLONE=UI-R-DK0-cdf-h-07-0-UI /FEA=EST /CNT=8 /TID=Rn.19479.1 /TIER=ConsEnd /STK=5 /UG=Rn.19479 /UG_TITLE=ESTs BI288873 CP110 protein Cp110 361634 NM_001108501 0007099 // centriole replication // not recorded /// 0032465 // regulation of cytokinesis // not recorded /// 0051298 // centrosome duplication // not recorded 0005813 // centrosome // not recorded /// 0005814 // centriole // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded 1375944_at AA849497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849497 /DB_XREF=gi:2937037 /DB_XREF=EST192264 /CLONE=RMUAF51 /FEA=EST /CNT=8 /TID=Rn.3514.1 /TIER=ConsEnd /STK=5 /UG=Rn.3514 /UG_TITLE=ESTs AA849497 acyl-CoA synthetase short-chain family member 2 Acss2 311569 NM_001107793 0006085 // acetyl-CoA biosynthetic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // not recorded /// 0019413 // acetate biosynthetic process // inferred from direct assay /// 0019542 // propionate biosynthetic process // inferred from direct assay 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0003987 // acetate-CoA ligase activity // inferred from direct assay /// 0003987 // acetate-CoA ligase activity // inferred from electronic annotation /// 0003987 // acetate-CoA ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016208 // AMP binding // inferred from electronic annotation 1375945_at BG375285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375285 /DB_XREF=gi:13299757 /DB_XREF=UI-R-CV1-bsy-e-11-0-UI.s1 /CLONE=UI-R-CV1-bsy-e-11-0-UI /FEA=EST /CNT=8 /TID=Rn.18874.1 /TIER=ConsEnd /STK=5 /UG=Rn.18874 /UG_TITLE=ESTs, Weakly similar to C36E8.3.p (Caenorhabditis elegans) (C.elegans) BG375285 plexin domain containing 2 Plxdc2 361282 NM_001108422 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1375946_at BF415909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415909 /DB_XREF=gi:11403898 /DB_XREF=UI-R-CA0-bkg-f-02-0-UI.s1 /CLONE=UI-R-CA0-bkg-f-02-0-UI /FEA=EST /CNT=8 /TID=Rn.19790.1 /TIER=ConsEnd /STK=5 /UG=Rn.19790 /UG_TITLE=ESTs BF415909 1375947_at AI171856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171856 /DB_XREF=gi:3711896 /DB_XREF=EST217843 /CLONE=RMUBR60 /FEA=EST /CNT=8 /TID=Rn.244.1 /TIER=ConsEnd /STK=5 /UG=Rn.244 /UG_TITLE=ESTs AI171856 1375948_at AI144919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144919 /DB_XREF=gi:3666718 /DB_XREF=UI-R-BT0-pp-d-11-0-UI.s1 /CLONE=UI-R-BT0-pp-d-11-0-UI /FEA=EST /CNT=8 /TID=Rn.17058.1 /TIER=ConsEnd /STK=5 /UG=Rn.17058 /UG_TITLE=ESTs AI144919 AlkB, alkylation repair homolog 5 (E. coli) Alkbh5 303193 XM_001077537 /// XM_220525 1375949_at BF391673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391673 /DB_XREF=gi:11376532 /DB_XREF=UI-R-CA1-bct-b-12-0-UI.s1 /CLONE=UI-R-CA1-bct-b-12-0-UI /FEA=EST /CNT=8 /TID=Rn.55770.1 /TIER=ConsEnd /STK=5 /UG=Rn.55770 /UG_TITLE=ESTs BF391673 1375950_a_at BI294235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294235 /DB_XREF=gi:14956501 /DB_XREF=UI-R-DK0-cea-c-07-0-UI.s1 /CLONE=UI-R-DK0-cea-c-07-0-UI /FEA=EST /CNT=8 /TID=Rn.12955.1 /TIER=ConsEnd /STK=5 /UG=Rn.12955 /UG_TITLE=ESTs, Weakly similar to T46337 hypothetical protein DKFZp434O2413.1 (H.sapiens) BI294235 centrosomal protein 164kDa Cep164 363055 XM_001064241 /// XM_343383 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375951_at AA818521 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818521 /DB_XREF=gi:4228315 /DB_XREF=UI-R-A0-au-c-11-0-UI.s1 /CLONE=UI-R-A0-au-c-11-0-UI /FEA=EST /CNT=8 /TID=Rn.16720.1 /TIER=ConsEnd /STK=5 /UG=Rn.16720 /UG_TITLE=ESTs AA818521 thrombomodulin Thbd 83580 NM_031771 0007565 // female pregnancy // not recorded /// 0007565 // female pregnancy // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from direct assay /// 0007596 // blood coagulation // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0010165 // response to X-ray // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1375952_at AI178495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178495 /DB_XREF=gi:3729133 /DB_XREF=EST222169 /CLONE=RPLCR75 /FEA=EST /CNT=8 /TID=Rn.8840.1 /TIER=ConsEnd /STK=5 /UG=Rn.8840 /UG_TITLE=ESTs AI178495 1375953_at AI012884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012884 /DB_XREF=gi:3226716 /DB_XREF=EST207335 /CLONE=RPLBC79 /FEA=EST /CNT=8 /TID=Rn.40486.1 /TIER=ConsEnd /STK=5 /UG=Rn.40486 /UG_TITLE=ESTs AI012884 1375954_at AW141940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141940 /DB_XREF=gi:6161799 /DB_XREF=EST292055 /CLONE=RGICP68 /FEA=EST /CNT=8 /TID=Rn.918.1 /TIER=ConsEnd /STK=5 /UG=Rn.918 /UG_TITLE=ESTs, Weakly similar to S105 MOUSE S100 CALCIUM-BINDING PROTEIN A5 (R.norvegicus) AW141940 S100 calcium binding protein A13 S100a13 295213 NM_001191607 /// XM_215607 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008360 // regulation of cell shape // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0046688 // response to copper ion // inferred from expression pattern /// 0050703 // interleukin-1 alpha secretion // not recorded /// 0051602 // response to electrical stimulus // inferred from expression pattern 0005615 // extracellular space // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0005507 // copper ion binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0048602 // fibroblast growth factor 1 binding // not recorded /// 0050786 // RAGE receptor binding // not recorded 1375955_at BI289415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289415 /DB_XREF=gi:14946963 /DB_XREF=UI-R-DK0-cfg-g-01-0-UI.s1 /CLONE=UI-R-DK0-cfg-g-01-0-UI /FEA=EST /CNT=8 /TID=Rn.3374.1 /TIER=ConsEnd /STK=5 /UG=Rn.3374 /UG_TITLE=ESTs BI289415 ring finger protein 114 Rnf114 362277 NM_001001517 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375956_at AI104569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104569 /DB_XREF=gi:3708906 /DB_XREF=EST213858 /CLONE=RHECF36 /FEA=EST /CNT=8 /TID=Rn.15168.1 /TIER=ConsEnd /STK=5 /UG=Rn.15168 /UG_TITLE=ESTs, Highly similar to CDK-ACTIVATING KINASE ASSEMBLY FACTOR MAT1 (M.musculus) AI104569 menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis) Mnat1 266713 NM_153472 0000082 // G1/S transition of mitotic cell cycle // inferred from mutant phenotype /// 0000718 // nucleotide-excision repair, DNA damage removal // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007512 // adult heart development // inferred from electronic annotation /// 0007512 // adult heart development // not recorded /// 0021591 // ventricular system development // inferred from electronic annotation /// 0021591 // ventricular system development // not recorded /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0044236 // multicellular organismal metabolic process // inferred from electronic annotation /// 0044236 // multicellular organismal metabolic process // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005675 // holo TFIIH complex // inferred from electronic annotation /// 0005675 // holo TFIIH complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from electronic annotation /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1375957_at AW434654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434654 /DB_XREF=gi:6965961 /DB_XREF=UI-R-BJ0p-afi-f-07-0-UI.s1 /CLONE=UI-R-BJ0p-afi-f-07-0-UI /FEA=EST /CNT=8 /TID=Rn.16340.1 /TIER=ConsEnd /STK=5 /UG=Rn.16340 /UG_TITLE=ESTs AW434654 1375958_at BF412297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412297 /DB_XREF=gi:11400286 /DB_XREF=UI-R-BT1-bnb-h-03-0-UI.s1 /CLONE=UI-R-BT1-bnb-h-03-0-UI /FEA=EST /CNT=8 /TID=Rn.20818.1 /TIER=ConsEnd /STK=5 /UG=Rn.20818 /UG_TITLE=ESTs BF412297 1375959_at AI007970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI007970 /DB_XREF=gi:3221802 /DB_XREF=EST202421 /CLONE=RBRAZ85 /FEA=EST /CNT=8 /TID=Rn.8826.1 /TIER=ConsEnd /STK=5 /UG=Rn.8826 /UG_TITLE=ESTs AI007970 naked cuticle homolog 1 (Drosophila) Nkd1 364952 NM_001108894 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375960_at BF281879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281879 /DB_XREF=gi:11212949 /DB_XREF=EST446470 /CLONE=RGIBH57 /FEA=EST /CNT=14 /TID=Rn.8364.1 /TIER=ConsEnd /STK=5 /UG=Rn.8364 /UG_TITLE=ESTs, Highly similar to germ cell-less homolog (Drosophila) (Mus musculus) (M.musculus) BF281879 germ cell-less homolog 1 (Drosophila) Gmcl1 312516 NM_001010956 /// NM_001033931 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded 0005635 // nuclear envelope // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375961_at AI072892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072892 /DB_XREF=gi:3399086 /DB_XREF=UI-R-Y0-mc-c-08-0-UI.s1 /CLONE=UI-R-Y0-mc-c-08-0-UI /FEA=EST /CNT=13 /TID=Rn.12034.1 /TIER=ConsEnd /STK=5 /UG=Rn.12034 /UG_TITLE=ESTs AI072892 frizzled-related protein Frzb 295691 NM_001100527 0007275 // multicellular organismal development // inferred from electronic annotation /// 0010721 // negative regulation of cell development // not recorded /// 0010721 // negative regulation of cell development // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0060029 // convergent extension involved in organogenesis // not recorded /// 0060029 // convergent extension involved in organogenesis // inferred from electronic annotation /// 0061037 // negative regulation of cartilage development // not recorded /// 0061037 // negative regulation of cartilage development // inferred from electronic annotation /// 0070367 // negative regulation of hepatocyte differentiation // not recorded /// 0070367 // negative regulation of hepatocyte differentiation // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded /// 0090103 // cochlea morphogenesis // not recorded /// 0090103 // cochlea morphogenesis // inferred from electronic annotation 0005615 // extracellular space // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017147 // Wnt-protein binding // inferred from electronic annotation 1375962_at BE102925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102925 /DB_XREF=gi:8495024 /DB_XREF=UI-R-BT1-aqu-b-03-0-UI.s1 /CLONE=UI-R-BT1-aqu-b-03-0-UI /FEA=EST /CNT=11 /TID=Rn.19777.1 /TIER=ConsEnd /STK=5 /UG=Rn.19777 /UG_TITLE=ESTs BE102925 SECIS binding protein 2-like Secisbp2l 296115 NM_001168527 1375963_at BF281523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281523 /DB_XREF=gi:11212593 /DB_XREF=EST446114 /CLONE=RGIAK65 /FEA=EST /CNT=11 /TID=Rn.259.1 /TIER=ConsEnd /STK=5 /UG=Rn.259 /UG_TITLE=ESTs BF281523 1375964_at BF282282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282282 /DB_XREF=gi:11213440 /DB_XREF=EST446961 /CLONE=RGIDM67 /FEA=EST /CNT=10 /TID=Rn.8734.1 /TIER=ConsEnd /STK=5 /UG=Rn.8734 /UG_TITLE=ESTs, Highly similar to L-3-phosphoserine phosphatase (H.sapiens) BF282282 phosphoserine phosphatase Psph 304429 NM_001009679 0006563 // L-serine metabolic process // inferred from sequence or structural similarity /// 0006564 // L-serine biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0033574 // response to testosterone stimulus // inferred from expression pattern 0019717 // synaptosome // inferred from direct assay 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004647 // phosphoserine phosphatase activity // not recorded /// 0004647 // phosphoserine phosphatase activity // inferred from sequence or structural similarity /// 0004647 // phosphoserine phosphatase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1375965_at AI229167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229167 /DB_XREF=gi:3813054 /DB_XREF=EST225862 /CLONE=RBRDE96 /FEA=EST /CNT=10 /TID=Rn.24410.1 /TIER=ConsEnd /STK=5 /UG=Rn.24410 /UG_TITLE=ESTs AI229167 ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) Ube2k 289623 NM_001106006 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0034450 // ubiquitin-ubiquitin ligase activity // not recorded 1375966_at BE098266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098266 /DB_XREF=gi:8490129 /DB_XREF=UI-R-BJ1-asz-g-01-0-UI.s1 /CLONE=UI-R-BJ1-asz-g-01-0-UI /FEA=EST /CNT=10 /TID=Rn.7966.1 /TIER=ConsEnd /STK=5 /UG=Rn.7966 /UG_TITLE=ESTs, Weakly similar to A57384 multimerin, endothelial cell, precursor (H.sapiens) BE098266 1375967_a_at AI172067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172067 /DB_XREF=gi:4134700 /DB_XREF=EST218062 /CLONE=RMUBU50 /FEA=EST /CNT=9 /TID=Rn.14834.1 /TIER=ConsEnd /STK=5 /UG=Rn.14834 /UG_TITLE=ESTs, Weakly similar to DUS6 RAT DUAL SPECIFICITY PROTEIN PHOSPHATASE 6 (R.norvegicus) AI172067 dual specificity phosphatase 22 Dusp22 361242 NM_001108412 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0046330 // positive regulation of JNK cascade // not recorded 0005515 // protein binding // not recorded /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1375968_at AI556268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556268 /DB_XREF=gi:4488631 /DB_XREF=UI-R-C2p-rf-f-11-0-UI.s1 /CLONE=UI-R-C2p-rf-f-11-0-UI /FEA=EST /CNT=9 /TID=Rn.34514.1 /TIER=ConsEnd /STK=5 /UG=Rn.34514 /UG_TITLE=ESTs, Highly similar to CTN2 MOUSE ALPHA-2 CATENIN (M.musculus) AI556268 catenin (cadherin associated protein), alpha 2 Ctnna2 297357 NM_001106598 0007155 // cell adhesion // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0021942 // radial glia guided migration of Purkinje cell // not recorded /// 0048813 // dendrite morphogenesis // not recorded /// 0048854 // brain morphogenesis // not recorded /// 0051823 // regulation of synapse structural plasticity // not recorded /// 0060134 // prepulse inhibition // not recorded 0005737 // cytoplasm // not recorded /// 0005912 // adherens junction // not recorded /// 0005913 // cell-cell adherens junction // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0030027 // lamellipodium // not recorded /// 0030424 // axon // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0045296 // cadherin binding // inferred from electronic annotation 1375969_at BI296555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296555 /DB_XREF=gi:14961093 /DB_XREF=UI-R-CV2-cgs-e-12-0-UI.s1 /CLONE=UI-R-CV2-cgs-e-12-0-UI /FEA=EST /CNT=9 /TID=Rn.62548.1 /TIER=ConsEnd /STK=5 /UG=Rn.62548 /UG_TITLE=ESTs, Moderately similar to I61730 lamina associated polypeptide 1C short splice form - rat (R.norvegicus) BI296555 torsin A interacting protein 2 Tor1aip2 304881 NM_001165896 /// NM_001165897 /// NM_199100 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375970_at AI010423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010423 /DB_XREF=gi:3224255 /DB_XREF=EST204874 /CLONE=RLUBZ28 /FEA=EST /CNT=9 /TID=Rn.15886.1 /TIER=ConsEnd /STK=5 /UG=Rn.15886 /UG_TITLE=ESTs AI010423 1375971_at BM386028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386028 /DB_XREF=gi:18186081 /DB_XREF=UI-R-DN1-ckf-p-01-0-UI.s1 /CLONE=UI-R-DN1-ckf-p-01-0-UI /FEA=EST /CNT=9 /TID=Rn.23403.1 /TIER=ConsEnd /STK=5 /UG=Rn.23403 /UG_TITLE=ESTs BM386028 ceroid-lipofuscinosis, neuronal 5 Cln5 306128 NM_001191689 /// XM_001076756 /// XM_224477 1375972_at AA851327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851327 /DB_XREF=gi:2938867 /DB_XREF=EST194095 /CLONE=RPLAF28 /FEA=EST /CNT=9 /TID=Rn.35930.1 /TIER=ConsEnd /STK=5 /UG=Rn.35930 /UG_TITLE=ESTs AA851327 similar to membrane protein expressed in epithelial-like lung adenocarcinoma RGD1307493 303317 XM_001080742 1375973_at AI600108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600108 /DB_XREF=gi:4609156 /DB_XREF=EST251811 /CLONE=REMDR52 /FEA=EST /CNT=9 /TID=Rn.29865.1 /TIER=ConsEnd /STK=5 /UG=Rn.29865 /UG_TITLE=ESTs, Highly similar to ARI1_HUMAN Ariadne-1 protein homolog (ARI-1) (Ubiquitin-conjugating enzyme E2-binding protein 1) (UbcH7-binding protein) (UbcM4-interacting protein) (HHARI) (H7-AP2) (HUSSY-27) (MOP-6) (H.sapiens) AI600108 ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) Arih1 300756 NM_001013108 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1375974_at AI406315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406315 /DB_XREF=gi:4249819 /DB_XREF=EST234601 /CLONE=RBRDM61 /FEA=EST /CNT=9 /TID=Rn.43446.1 /TIER=ConsEnd /STK=5 /UG=Rn.43446 /UG_TITLE=ESTs AI406315 1375975_at BF398567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398567 /DB_XREF=gi:11383561 /DB_XREF=UI-R-BS2-beq-c-11-0-UI.s1 /CLONE=UI-R-BS2-beq-c-11-0-UI /FEA=EST /CNT=8 /TID=Rn.20305.1 /TIER=ConsEnd /STK=5 /UG=Rn.20305 /UG_TITLE=ESTs BF398567 1375976_a_at AA849388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849388 /DB_XREF=gi:2936928 /DB_XREF=EST192155 /CLONE=RMUAE20 /FEA=EST /CNT=1 /TID=Rn.1922.2 /TIER=ConsEnd /STK=1 /UG=Rn.1922 /UG_TITLE=ESTs, Weakly similar to S69670 hypothetical protein YDR386w - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AA849388 MUS81 endonuclease homolog (S. cerevisiae) Mus81 293678 NM_001025645 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006281 // DNA repair // not recorded /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048257 // 3'-flap endonuclease activity // inferred from electronic annotation /// 0048257 // 3'-flap endonuclease activity // not recorded 1375977_at AA958015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA958015 /DB_XREF=gi:4277905 /DB_XREF=UI-R-E1-gc-h-04-0-UI.s1 /CLONE=UI-R-E1-gc-h-04-0-UI /FEA=EST /CNT=8 /TID=Rn.9472.1 /TIER=ConsEnd /STK=5 /UG=Rn.9472 /UG_TITLE=ESTs, Weakly similar to CALM_HUMAN CALMODULIN (R.norvegicus) AA958015 centrin 2 Cetn2 84593 XM_001053739 /// XM_215222 0007099 // centriole replication // inferred from electronic annotation /// 0007099 // centriole replication // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0032465 // regulation of cytokinesis // inferred from electronic annotation /// 0032465 // regulation of cytokinesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005813 // centrosome // inferred from direct assay /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005814 // centriole // inferred from electronic annotation /// 0005814 // centriole // not recorded /// 0005829 // cytosol // not recorded /// 0005932 // microtubule basal body // inferred from direct assay /// 0005932 // microtubule basal body // not recorded /// 0005932 // microtubule basal body // inferred from electronic annotation /// 0032391 // photoreceptor connecting cilium // inferred from electronic annotation /// 0032391 // photoreceptor connecting cilium // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit binding // not recorded 1375978_at BI296308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296308 /DB_XREF=gi:14960621 /DB_XREF=UI-R-DK0-cey-h-05-0-UI.s1 /CLONE=UI-R-DK0-cey-h-05-0-UI /FEA=EST /CNT=8 /TID=Rn.24180.1 /TIER=ConsEnd /STK=5 /UG=Rn.24180 /UG_TITLE=ESTs, Moderately similar to T00039 hypothetical protein KIAA0290 (H.sapiens) BI296308 FCH domain only 1 Fcho1 290639 NM_001106069 1375979_at AA945734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945734 /DB_XREF=gi:4132590 /DB_XREF=EST201233 /CLONE=RLUAS61 /FEA=EST /CNT=8 /TID=Rn.24922.1 /TIER=ConsEnd /STK=5 /UG=Rn.24922 /UG_TITLE=ESTs AA945734 1375980_at BI285437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285437 /DB_XREF=gi:14939074 /DB_XREF=UI-R-DD0-caa-b-02-0-UI.s1 /CLONE=UI-R-DD0-caa-b-02-0-UI /FEA=EST /CNT=8 /TID=Rn.33897.1 /TIER=ConsEnd /STK=5 /UG=Rn.33897 /UG_TITLE=ESTs BI285437 nucleoredoxin Nxn 360577 NM_001108285 0008152 // metabolic process // not recorded /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005634 // nucleus // not recorded 0004791 // thioredoxin-disulfide reductase activity // not recorded /// 0016209 // antioxidant activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1375981_a_at AA997899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997899 /DB_XREF=gi:4286108 /DB_XREF=UI-R-C0-ht-c-09-0-UI.s1 /CLONE=UI-R-C0-ht-c-09-0-UI /FEA=EST /CNT=8 /TID=Rn.2741.1 /TIER=ConsEnd /STK=5 /UG=Rn.2741 /UG_TITLE=ESTs, Highly similar to Su(var)3-9 homolog (M.musculus) AA997899 suppressor of variegation 3-9 homolog 1 (Drosophila) Suv39h1 302553 NM_001106956 0000183 // chromatin silencing at rDNA // not recorded /// 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0018022 // peptidyl-lysine methylation // not recorded /// 0032259 // methylation // not recorded /// 0034968 // histone lysine methylation // not recorded /// 0051567 // histone H3-K9 methylation // not recorded 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005677 // chromatin silencing complex // not recorded /// 0033553 // rDNA heterochromatin // not recorded 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008168 // methyltransferase activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // not recorded /// 0042054 // histone methyltransferase activity // not recorded /// 0046974 // histone methyltransferase activity (H3-K9 specific) // not recorded /// 0047485 // protein N-terminus binding // not recorded 1375982_at BI296037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296037 /DB_XREF=gi:14960078 /DB_XREF=UI-R-DK0-cfd-f-05-0-UI.s1 /CLONE=UI-R-DK0-cfd-f-05-0-UI /FEA=EST /CNT=8 /TID=Rn.25140.1 /TIER=ConsEnd /STK=5 /UG=Rn.25140 /UG_TITLE=ESTs BI296037 1375983_at AI234287 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234287 /DB_XREF=gi:4135983 /DB_XREF=EST230975 /CLONE=RLUCZ12 /FEA=EST /CNT=8 /TID=Rn.23790.1 /TIER=ConsEnd /STK=5 /UG=Rn.23790 /UG_TITLE=ESTs AI234287 MAM domain containing 2 Mamdc2 309410 XM_001078660 /// XM_219905 0019800 // peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan // inferred from electronic annotation /// 0019800 // peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan // not recorded 0005614 // interstitial matrix // inferred from electronic annotation /// 0005614 // interstitial matrix // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0005539 // glycosaminoglycan binding // inferred from electronic annotation /// 0005539 // glycosaminoglycan binding // not recorded 1375984_at BE103689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103689 /DB_XREF=gi:8495789 /DB_XREF=UI-R-BX0-arf-c-12-0-UI.s1 /CLONE=UI-R-BX0-arf-c-12-0-UI /FEA=EST /CNT=8 /TID=Rn.20520.1 /TIER=ConsEnd /STK=5 /UG=Rn.20520 /UG_TITLE=ESTs BE103689 zinc finger homeobox 4 Zfhx4 310250 NM_001191702 /// XM_001058915 /// XM_226964 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1375985_at BF282984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282984 /DB_XREF=gi:11214054 /DB_XREF=EST447575 /CLONE=RGIDV88 /FEA=EST /CNT=8 /TID=Rn.9247.1 /TIER=ConsEnd /STK=5 /UG=Rn.9247 /UG_TITLE=ESTs BF282984 RAB2B, member RAS oncogene family Rab2b 305853 NM_001037645 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1375986_at AI103155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103155 /DB_XREF=gi:3707728 /DB_XREF=EST212444 /CLONE=REMBX86 /FEA=EST /CNT=8 /TID=Rn.22302.1 /TIER=ConsEnd /STK=5 /UG=Rn.22302 /UG_TITLE=ESTs AI103155 1375987_at AW525194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525194 /DB_XREF=gi:7167579 /DB_XREF=UI-R-BJ0p-aio-h-05-0-UI.s1 /CLONE=UI-R-BJ0p-aio-h-05-0-UI /FEA=EST /CNT=8 /TID=Rn.18616.1 /TIER=ConsEnd /STK=5 /UG=Rn.18616 /UG_TITLE=ESTs AW525194 ceramide kinase Cerk 300129 NM_001134861 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0000299 // integral to membrane of membrane fraction // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded 0000287 // magnesium ion binding // not recorded /// 0001729 // ceramide kinase activity // not recorded /// 0004143 // diacylglycerol kinase activity // inferred from electronic annotation 1375988_at AW914928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW914928 /DB_XREF=gi:8080610 /DB_XREF=EST346232 /CLONE=RGIBM43 /FEA=EST /CNT=8 /TID=Rn.18086.1 /TIER=ConsEnd /STK=5 /UG=Rn.18086 /UG_TITLE=ESTs AW914928 hypothetical protein LOC680262 LOC680262 680262 XM_001056376 /// XM_002727022 /// XM_002727023 /// XM_002727024 /// XM_002729924 /// XM_002729925 1375989_a_at AI170362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170362 /DB_XREF=gi:3710402 /DB_XREF=EST216288 /CLONE=RLUCH37 /FEA=EST /CNT=8 /TID=Rn.25549.1 /TIER=ConsEnd /STK=5 /UG=Rn.25549 /UG_TITLE=ESTs, Weakly similar to NUCLEAR FACTOR NF-KAPPA-B P105 SUBUNIT (R.norvegicus) AI170362 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100 Nfkb2 309452 NM_001008349 0002268 // follicular dendritic cell differentiation // not recorded /// 0002467 // germinal center formation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0030198 // extracellular matrix organization // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048536 // spleen development // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0033257 // Bcl3/NF-kappaB2 complex // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1375990_a_at BF284519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284519 /DB_XREF=gi:11215589 /DB_XREF=EST449110 /CLONE=RGIER54 /FEA=EST /CNT=3 /TID=Rn.34609.2 /TIER=ConsEnd /STK=1 /UG=Rn.34609 /UG_TITLE=ESTs BF284519 1375991_at BE120163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120163 /DB_XREF=gi:8512268 /DB_XREF=UI-R-CA0-bap-c-10-0-UI.s1 /CLONE=UI-R-CA0-bap-c-10-0-UI /FEA=EST /CNT=8 /TID=Rn.53470.1 /TIER=ConsEnd /STK=5 /UG=Rn.53470 /UG_TITLE=ESTs BE120163 WD repeat domain 73 Wdr73 308751 NM_001107525 1375992_at BM389934 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389934 /DB_XREF=gi:18189987 /DB_XREF=UI-R-CN1-cji-n-22-0-UI.s1 /CLONE=UI-R-CN1-cji-n-22-0-UI /FEA=EST /CNT=8 /TID=Rn.22858.1 /TIER=ConsEnd /STK=5 /UG=Rn.22858 /UG_TITLE=ESTs BM389934 similar to FLJ46082 protein RGD1564114 499765 NM_001127563 1375993_at AW531919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531919 /DB_XREF=gi:7174333 /DB_XREF=UI-R-BS0-amj-h-08-0-UI.s1 /CLONE=UI-R-BS0-amj-h-08-0-UI /FEA=EST /CNT=8 /TID=Rn.40817.1 /TIER=ConsEnd /STK=5 /UG=Rn.40817 /UG_TITLE=ESTs AW531919 1375994_at BE107324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107324 /DB_XREF=gi:8499429 /DB_XREF=UI-R-BS1-ays-d-11-0-UI.s1 /CLONE=UI-R-BS1-ays-d-11-0-UI /FEA=EST /CNT=8 /TID=Rn.23028.1 /TIER=ConsEnd /STK=5 /UG=Rn.23028 /UG_TITLE=ESTs BE107324 1375995_at AI180370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180370 /DB_XREF=gi:3731008 /DB_XREF=EST224114 /CLONE=RSPCV47 /FEA=EST /CNT=8 /TID=Rn.29799.1 /TIER=ConsEnd /STK=5 /UG=Rn.29799 /UG_TITLE=ESTs AI180370 similar to KIAA0528 protein RGD1304592 362461 NM_001134581 0005515 // protein binding // not recorded 1375996_at AA894262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894262 /DB_XREF=gi:3021141 /DB_XREF=EST198065 /CLONE=RSPAU14 /FEA=EST /CNT=8 /TID=Rn.3755.1 /TIER=ConsEnd /STK=5 /UG=Rn.3755 /UG_TITLE=ESTs, Highly similar to DIFF6 PROTEIN (M.musculus) AA894262 septin 1 Sept1 293507 NM_001012460 0007049 // cell cycle // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0031105 // septin complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1375997_at AA799503 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799503 /DB_XREF=gi:2862458 /DB_XREF=EST189000 /CLONE=RHEAB81 /FEA=EST /CNT=8 /TID=Rn.3768.1 /TIER=ConsEnd /STK=5 /UG=Rn.3768 /UG_TITLE=ESTs AA799503 similar to hypothetical protein FLJ20950 RGD1311756 362769 NM_001173557 /// XM_001065046 /// XM_343095 0005739 // mitochondrion // not recorded 1375998_at BI279840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279840 /DB_XREF=gi:14928040 /DB_XREF=UI-R-CU0s-cbr-e-11-0-UI.s1 /CLONE=UI-R-CU0s-cbr-e-11-0-UI /FEA=EST /CNT=8 /TID=Rn.19359.1 /TIER=ConsEnd /STK=5 /UG=Rn.19359 /UG_TITLE=ESTs, Moderately similar to T46297 hypothetical protein DKFZp434H0510.1 (H.sapiens) BI279840 anaphase promoting complex subunit 7 Anapc7 304490 NM_001107142 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070979 // protein K11-linked ubiquitination // not recorded 0005654 // nucleoplasm // not recorded /// 0005680 // anaphase-promoting complex // not recorded /// 0005829 // cytosol // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1375999_at AW143197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143197 /DB_XREF=gi:6163096 /DB_XREF=EST293493 /CLONE=RGIBF50 /FEA=EST /CNT=8 /TID=Rn.7600.1 /TIER=ConsEnd /STK=5 /UG=Rn.7600 /UG_TITLE=ESTs AW143197 similar to DD1 RGD1312005 291580 NM_001106144 1376000_at AW143156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143156 /DB_XREF=gi:6163055 /DB_XREF=EST293452 /CLONE=RGIBE67 /FEA=EST /CNT=8 /TID=Rn.21679.1 /TIER=ConsEnd /STK=5 /UG=Rn.21679 /UG_TITLE=ESTs AW143156 1376001_at BG380440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380440 /DB_XREF=gi:13304912 /DB_XREF=UI-R-CT0-btx-c-09-0-UI.s1 /CLONE=UI-R-CT0-btx-c-09-0-UI /FEA=EST /CNT=8 /TID=Rn.11499.1 /TIER=ConsEnd /STK=5 /UG=Rn.11499 /UG_TITLE=ESTs, Moderately similar to S69245 RNA polymerase I-associated factor PAF53 - mouse (M.musculus) BG380440 polymerase (RNA) I polypeptide E Polr1e 313245 NM_001107938 0006350 // transcription // inferred from electronic annotation /// 0009303 // rRNA transcription // inferred from electronic annotation /// 0009303 // rRNA transcription // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376002_at AI406363 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406363 /DB_XREF=gi:4249867 /DB_XREF=EST234649 /CLONE=RBRDM80 /FEA=EST /CNT=7 /TID=Rn.3103.1 /TIER=ConsEnd /STK=5 /UG=Rn.3103 /UG_TITLE=ESTs AI406363 1376003_at AI227931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227931 /DB_XREF=gi:3811818 /DB_XREF=EST224626 /CLONE=RBRCN73 /FEA=EST /CNT=7 /TID=Rn.40960.1 /TIER=ConsEnd /STK=5 /UG=Rn.40960 /UG_TITLE=ESTs, Moderately similar to T00354 hypothetical protein KIAA0692 (H.sapiens) AI227931 Ankyrin repeat and LEM domain containing 2 Ankle2 360829 NM_001047901 0005635 // nuclear envelope // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1376004_at BF285297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285297 /DB_XREF=gi:11216367 /DB_XREF=EST449888 /CLONE=RGIFD19 /FEA=EST /CNT=7 /TID=Rn.18174.1 /TIER=ConsEnd /STK=5 /UG=Rn.18174 /UG_TITLE=ESTs BF285297 1376005_at BE109334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109334 /DB_XREF=gi:8501439 /DB_XREF=UI-R-BJ1-auq-g-01-0-UI.s1 /CLONE=UI-R-BJ1-auq-g-01-0-UI /FEA=EST /CNT=7 /TID=Rn.40213.1 /TIER=ConsEnd /STK=5 /UG=Rn.40213 /UG_TITLE=ESTs BE109334 1376006_at BG373799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373799 /DB_XREF=gi:13270336 /DB_XREF=UI-R-CV1-bsk-a-10-0-UI.s1 /CLONE=UI-R-CV1-bsk-a-10-0-UI /FEA=EST /CNT=7 /TID=Rn.46830.1 /TIER=ConsEnd /STK=5 /UG=Rn.46830 /UG_TITLE=ESTs BG373799 1376007_at AI411772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411772 /DB_XREF=gi:4255276 /DB_XREF=EST240066 /CLONE=RPLDJ61 /FEA=EST /CNT=7 /TID=Rn.19429.1 /TIER=ConsEnd /STK=5 /UG=Rn.19429 /UG_TITLE=ESTs AI411772 1376008_at BI275819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275819 /DB_XREF=gi:14920116 /DB_XREF=UI-R-CX0-bxg-h-12-0-UI.s1 /CLONE=UI-R-CX0-bxg-h-12-0-UI /FEA=EST /CNT=7 /TID=Rn.43722.1 /TIER=ConsEnd /STK=5 /UG=Rn.43722 /UG_TITLE=ESTs BI275819 chromobox homolog 8 (Pc class homolog, Drosophila) Cbx8 303731 NM_001034078 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0016574 // histone ubiquitination // not recorded 0000151 // ubiquitin ligase complex // not recorded /// 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0031519 // PcG protein complex // not recorded 0003682 // chromatin binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded 1376009_at BI300199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300199 /DB_XREF=gi:14976479 /DB_XREF=UI-R-CV2-cic-b-01-0-UI.s1 /CLONE=UI-R-CV2-cic-b-01-0-UI /FEA=EST /CNT=7 /TID=Rn.58607.1 /TIER=ConsEnd /STK=5 /UG=Rn.58607 /UG_TITLE=ESTs, Weakly similar to MYHB_MOUSE MYOSIN HEAVY CHAIN, SMOOTH MUSCLE ISOFORM (SMMHC) (M.musculus) BI300199 1376010_at BM384201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384201 /DB_XREF=gi:18184254 /DB_XREF=UI-R-DZ0-cks-l-18-0-UI.s1 /CLONE=UI-R-DZ0-cks-l-18-0-UI /FEA=EST /CNT=7 /TID=Rn.8877.1 /TIER=ConsEnd /STK=5 /UG=Rn.8877 /UG_TITLE=ESTs BM384201 PRP4 pre-mRNA processing factor 4 homolog B (yeast) Prpf4b 291078 NM_001011923 0006397 // mRNA processing // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005694 // chromosome // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1376011_at AI411359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411359 /DB_XREF=gi:4254863 /DB_XREF=EST239653 /CLONE=RKIES21 /FEA=EST /CNT=7 /TID=Rn.38649.1 /TIER=ConsEnd /STK=5 /UG=Rn.38649 /UG_TITLE=ESTs AI411359 1376012_at BI295108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295108 /DB_XREF=gi:14958224 /DB_XREF=UI-R-DK0-cef-h-07-0-UI.s1 /CLONE=UI-R-DK0-cef-h-07-0-UI /FEA=EST /CNT=7 /TID=Rn.2617.1 /TIER=ConsEnd /STK=5 /UG=Rn.2617 /UG_TITLE=ESTs BI295108 similar to hypothetical gene supported by BC025338 RGD1564419 500128 NM_001109234 1376013_at BF282700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282700 /DB_XREF=gi:11213770 /DB_XREF=EST447291 /CLONE=RGIDR84 /FEA=EST /CNT=7 /TID=Rn.8149.1 /TIER=ConsEnd /STK=5 /UG=Rn.8149 /UG_TITLE=ESTs BF282700 tetratricopeptide repeat domain 9 Ttc9 500689 NM_001134731 0006457 // protein folding // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1376014_at AI045725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045725 /DB_XREF=gi:3292544 /DB_XREF=UI-R-C1-jy-d-12-0-UI.s2 /CLONE=UI-R-C1-jy-d-12-0-UI /FEA=EST /CNT=7 /TID=Rn.27760.1 /TIER=ConsEnd /STK=5 /UG=Rn.27760 /UG_TITLE=ESTs AI045725 1376015_at BI296605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296605 /DB_XREF=gi:14961196 /DB_XREF=UI-R-CV2-cgt-b-10-0-UI.s1 /CLONE=UI-R-CV2-cgt-b-10-0-UI /FEA=EST /CNT=7 /TID=Rn.33893.1 /TIER=ConsEnd /STK=5 /UG=Rn.33893 /UG_TITLE=ESTs BI296605 1376016_at BF285425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285425 /DB_XREF=gi:11216585 /DB_XREF=EST450106 /CLONE=RGIFH07 /FEA=EST /CNT=7 /TID=Rn.3071.1 /TIER=ConsEnd /STK=5 /UG=Rn.3071 /UG_TITLE=ESTs BF285425 similar to RIKEN cDNA 1110007L15 RGD1311660 288518 NM_001163320 0005515 // protein binding // not recorded 1376017_at BF390554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390554 /DB_XREF=gi:11375400 /DB_XREF=UI-R-CA1-bcc-d-09-0-UI.s1 /CLONE=UI-R-CA1-bcc-d-09-0-UI /FEA=EST /CNT=7 /TID=Rn.13692.1 /TIER=ConsEnd /STK=5 /UG=Rn.13692 /UG_TITLE=ESTs BF390554 similar to WD repeat domain 17 /// similar to WD repeat domain 17 LOC361188 /// LOC364653 361188 /// 364653 XM_001056850 /// XM_002725186 /// XM_002725187 /// XM_341470 /// XM_344557 1376018_at BF398513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398513 /DB_XREF=gi:11383505 /DB_XREF=UI-R-BS2-bep-f-09-0-UI.s1 /CLONE=UI-R-BS2-bep-f-09-0-UI /FEA=EST /CNT=7 /TID=Rn.12408.1 /TIER=ConsEnd /STK=5 /UG=Rn.12408 /UG_TITLE=ESTs, Moderately similar to lamin B1 (Rattus norvegicus) (R.norvegicus) BF398513 1376019_at AI598367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598367 /DB_XREF=gi:4607415 /DB_XREF=EST250070 /CLONE=REMDQ23 /FEA=EST /CNT=7 /TID=Rn.40336.1 /TIER=ConsEnd /STK=5 /UG=Rn.40336 /UG_TITLE=ESTs, Highly similar to ATPase, class 2, member b; ATPase 9B, class II; ATPase 9B, p type (Mus musculus) (M.musculus) AI598367 ATPase, class II, type 9B Atp9b 291411 NM_001106130 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0015914 // phospholipid transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004012 // phospholipid-translocating ATPase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation 1376020_at BM386114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386114 /DB_XREF=gi:18186167 /DB_XREF=UI-R-CN1-cjf-a-13-0-UI.s1 /CLONE=UI-R-CN1-cjf-a-13-0-UI /FEA=EST /CNT=7 /TID=Rn.49365.1 /TIER=ConsEnd /STK=5 /UG=Rn.49365 /UG_TITLE=ESTs BM386114 DPH2 homolog (S. cerevisiae) Dph2 298452 NM_001015007 0017183 // peptidyl-diphthamide biosynthetic process from peptidyl-histidine // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376021_at BM384049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384049 /DB_XREF=gi:18184102 /DB_XREF=UI-R-DM1-ckb-m-16-0-UI.s1 /CLONE=UI-R-DM1-ckb-m-16-0-UI /FEA=EST /CNT=7 /TID=Rn.23110.1 /TIER=ConsEnd /STK=5 /UG=Rn.23110 /UG_TITLE=ESTs BM384049 1376022_at BI292196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292196 /DB_XREF=gi:14952461 /DB_XREF=UI-R-DN0-civ-i-15-0-UI.s1 /CLONE=UI-R-DN0-civ-i-15-0-UI /FEA=EST /CNT=7 /TID=Rn.41209.1 /TIER=ConsEnd /STK=5 /UG=Rn.41209 /UG_TITLE=ESTs BI292196 1376023_at BM386555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386555 /DB_XREF=gi:18186608 /DB_XREF=UI-R-CN1-cjg-g-08-0-UI.s1 /CLONE=UI-R-CN1-cjg-g-08-0-UI /FEA=EST /CNT=7 /TID=Rn.23395.1 /TIER=ConsEnd /STK=5 /UG=Rn.23395 /UG_TITLE=ESTs BM386555 retinoic acid receptor, gamma Rarg 685072 NM_001135249 /// NM_001135250 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0032331 // negative regulation of chondrocyte differentiation // not recorded /// 0032526 // response to retinoic acid // not recorded /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043068 // positive regulation of programmed cell death // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048048 // embryonic eye morphogenesis // not recorded /// 0048384 // retinoic acid receptor signaling pathway // not recorded /// 0048608 // reproductive structure development // not recorded /// 0048732 // gland development // not recorded /// 0060349 // bone morphogenesis // not recorded /// 0060429 // epithelium development // not recorded /// 0060534 // trachea cartilage development // not recorded /// 0060740 // prostate gland epithelium morphogenesis // not recorded /// 0061037 // negative regulation of cartilage development // not recorded /// 0070384 // Harderian gland development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0003708 // retinoic acid receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // not recorded 1376024_at AW914992 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW914992 /DB_XREF=gi:8080676 /DB_XREF=EST346296 /CLONE=RGIBN25 /FEA=EST /CNT=7 /TID=Rn.16293.1 /TIER=ConsEnd /STK=5 /UG=Rn.16293 /UG_TITLE=ESTs AW914992 stromal interaction molecule 1 Stim1 361618 NM_001108496 0005513 // detection of calcium ion // not recorded /// 0005513 // detection of calcium ion // inferred from sequence or structural similarity /// 0005513 // detection of calcium ion // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0032237 // activation of store-operated calcium channel activity // not recorded /// 0032237 // activation of store-operated calcium channel activity // inferred from sequence or structural similarity /// 0032237 // activation of store-operated calcium channel activity // inferred from electronic annotation /// 0051924 // regulation of calcium ion transport // not recorded /// 0051924 // regulation of calcium ion transport // inferred from sequence or structural similarity /// 0051924 // regulation of calcium ion transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded /// 0030176 // integral to endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051010 // microtubule plus-end binding // not recorded /// 0051010 // microtubule plus-end binding // inferred from sequence or structural similarity /// 0051010 // microtubule plus-end binding // inferred from electronic annotation 1376025_at BG670963 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670963 /DB_XREF=gi:13893062 /DB_XREF=DRNBJE04 /CLONE=DRNBJE04 /FEA=EST /CNT=7 /TID=Rn.6573.1 /TIER=ConsEnd /STK=5 /UG=Rn.6573 /UG_TITLE=ESTs, Moderately similar to ANM2_HUMAN PROTEIN ARGININE N-METHYLTRANSFERASE 2 (H.sapiens) BG670963 protein arginine methyltransferase 2 Prmt2 499420 NM_001025144 0006955 // immune response // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1376026_at AI178243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178243 /DB_XREF=gi:3728881 /DB_XREF=EST221908 /CLONE=RPLCN92 /FEA=EST /CNT=7 /TID=Rn.17226.1 /TIER=ConsEnd /STK=5 /UG=Rn.17226 /UG_TITLE=ESTs, Highly similar to DONS_MOUSE DOWNSTREAM OF SON GENE PROTEIN (PROTEIN 3SG) (M.musculus) AI178243 downstream neighbor of SON Donson 288257 NM_001008287 1376027_at AI101673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101673 /DB_XREF=gi:3706544 /DB_XREF=EST210962 /CLONE=RBRBT64 /FEA=EST /CNT=7 /TID=Rn.22059.1 /TIER=ConsEnd /STK=5 /UG=Rn.22059 /UG_TITLE=ESTs AI101673 1376028_at BI285463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285463 /DB_XREF=gi:14939126 /DB_XREF=UI-R-DD0-caa-d-10-0-UI.s1 /CLONE=UI-R-DD0-caa-d-10-0-UI /FEA=EST /CNT=7 /TID=Rn.37597.1 /TIER=ConsEnd /STK=5 /UG=Rn.37597 /UG_TITLE=ESTs BI285463 male-specific lethal 1 homolog (Drosophila) Msl1 303514 NM_001107048 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 1376029_at BI295991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295991 /DB_XREF=gi:14959989 /DB_XREF=UI-R-DK0-cfd-b-05-0-UI.s1 /CLONE=UI-R-DK0-cfd-b-05-0-UI /FEA=EST /CNT=7 /TID=Rn.11705.1 /TIER=ConsEnd /STK=5 /UG=Rn.11705 /UG_TITLE=ESTs BI295991 1376030_at BI275873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275873 /DB_XREF=gi:14920230 /DB_XREF=UI-R-CX0-bxh-e-10-0-UI.s1 /CLONE=UI-R-CX0-bxh-e-10-0-UI /FEA=EST /CNT=7 /TID=Rn.2165.1 /TIER=ConsEnd /STK=5 /UG=Rn.2165 /UG_TITLE=ESTs, Weakly similar to S68418 protein phosphatase 1M chain M110 isoform - rat (R.norvegicus) BI275873 ArfGAP with coiled-coil, ankyrin repeat and PH domains 1 Acap1 287443 NM_001105796 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1376031_at BE099769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099769 /DB_XREF=gi:8491649 /DB_XREF=UI-R-BJ1-atq-a-09-0-UI.s1 /CLONE=UI-R-BJ1-atq-a-09-0-UI /FEA=EST /CNT=7 /TID=Rn.7441.1 /TIER=ConsEnd /STK=5 /UG=Rn.7441 /UG_TITLE=ESTs BE099769 1376032_at BF283840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283840 /DB_XREF=gi:11214910 /DB_XREF=EST448431 /CLONE=RGIEH31 /FEA=EST /CNT=7 /TID=Rn.22378.1 /TIER=ConsEnd /STK=5 /UG=Rn.22378 /UG_TITLE=ESTs BF283840 1376033_at BF415398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415398 /DB_XREF=gi:11403387 /DB_XREF=UI-R-BJ2-box-d-11-0-UI.s1 /CLONE=UI-R-BJ2-box-d-11-0-UI /FEA=EST /CNT=7 /TID=Rn.45983.1 /TIER=ConsEnd /STK=5 /UG=Rn.45983 /UG_TITLE=ESTs BF415398 regulatory factor X, 1 (influences HLA class II expression) Rfx1 288906 NM_001105944 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1376034_at AW141824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141824 /DB_XREF=gi:6161675 /DB_XREF=EST291931 /CLONE=RGICI70 /FEA=EST /CNT=7 /TID=Rn.15448.1 /TIER=ConsEnd /STK=5 /UG=Rn.15448 /UG_TITLE=ESTs AW141824 family with sequence similarity 115, member A Fam115a 362353 XM_001072497 /// XM_342675 1376035_at BI274308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274308 /DB_XREF=gi:14885113 /DB_XREF=UI-R-CW0-bwh-d-07-0-UI.s1 /CLONE=UI-R-CW0-bwh-d-07-0-UI /FEA=EST /CNT=7 /TID=Rn.8129.1 /TIER=ConsEnd /STK=5 /UG=Rn.8129 /UG_TITLE=ESTs BI274308 tetratricopeptide repeat domain 7B Ttc7b 362768 NM_001108719 0005488 // binding // inferred from electronic annotation 1376036_at AI180408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180408 /DB_XREF=gi:3731046 /DB_XREF=EST224153 /CLONE=RSPCX31 /FEA=EST /CNT=7 /TID=Rn.8174.1 /TIER=ConsEnd /STK=5 /UG=Rn.8174 /UG_TITLE=ESTs AI180408 feline leukemia virus subgroup C cellular receptor family, member 2 Flvcr2 314323 NM_199109 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0015232 // heme transporter activity // inferred from sequence or structural similarity /// 0020037 // heme binding // inferred from sequence or structural similarity 1376037_at BF283385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283385 /DB_XREF=gi:11214455 /DB_XREF=EST447976 /CLONE=RGIEB29 /FEA=EST /CNT=7 /TID=Rn.19210.1 /TIER=ConsEnd /STK=5 /UG=Rn.19210 /UG_TITLE=ESTs, Moderately similar to T14745 hypothetical protein DKFZp586G1624.1 (H.sapiens) BF283385 achalasia, adrenocortical insufficiency, alacrimia (Allgrove, triple-A) Aaas 300259 NM_001106795 0006913 // nucleocytoplasmic transport // not recorded /// 0007612 // learning // not recorded /// 0009566 // fertilization // not recorded 0005635 // nuclear envelope // not recorded /// 0005643 // nuclear pore // not recorded 1376038_at AI411054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411054 /DB_XREF=gi:4254558 /DB_XREF=EST239348 /CLONE=RKIEP13 /FEA=EST /CNT=7 /TID=Rn.3032.1 /TIER=ConsEnd /STK=5 /UG=Rn.3032 /UG_TITLE=ESTs AI411054 testis expressed 2 Tex2 303611 XM_001069235 /// XM_001081602 /// XM_001081606 /// XM_002727825 0016020 // membrane // inferred from electronic annotation 1376039_at AA996882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996882 /DB_XREF=gi:4280646 /DB_XREF=UI-R-C0-hh-c-02-0-UI.s1 /CLONE=UI-R-C0-hh-c-02-0-UI /FEA=EST /CNT=7 /TID=Rn.18450.1 /TIER=ConsEnd /STK=5 /UG=Rn.18450 /UG_TITLE=ESTs AA996882 aurora kinase A Aurka 261730 NM_153296 0000278 // mitotic cell cycle // inferred from electronic annotation /// 0000278 // mitotic cell cycle // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0031647 // regulation of protein stability // inferred from electronic annotation /// 0031647 // regulation of protein stability // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0051301 // cell division // inferred from electronic annotation 0000922 // spindle pole // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded /// 0031616 // spindle pole centrosome // inferred from electronic annotation /// 0031616 // spindle pole centrosome // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded 1376040_at BI290044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290044 /DB_XREF=gi:14948241 /DB_XREF=UI-R-DK0-cfr-b-09-0-UI.s1 /CLONE=UI-R-DK0-cfr-b-09-0-UI /FEA=EST /CNT=7 /TID=Rn.44190.1 /TIER=ConsEnd /STK=5 /UG=Rn.44190 /UG_TITLE=ESTs BI290044 signal-induced proliferation-associated 1 like 2 Sipa1l2 361442 NM_001009704 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1376041_at BI280079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280079 /DB_XREF=gi:14928524 /DB_XREF=UI-R-DD0-cbc-c-02-0-UI.s1 /CLONE=UI-R-DD0-cbc-c-02-0-UI /FEA=EST /CNT=7 /TID=Rn.26582.1 /TIER=ConsEnd /STK=5 /UG=Rn.26582 /UG_TITLE=ESTs BI280079 epsin 3 Epn3 360605 NM_001024791 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0008289 // lipid binding // inferred from electronic annotation 1376042_at BF284673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284673 /DB_XREF=gi:11215743 /DB_XREF=EST449264 /CLONE=RGIEU73 /FEA=EST /CNT=7 /TID=Rn.15417.1 /TIER=ConsEnd /STK=5 /UG=Rn.15417 /UG_TITLE=ESTs, Highly similar to FGD1 MOUSE PUTATIVE RHORAC GUANINE NUCLEOTIDE EXCHANGE FACTOR (M.musculus) BF284673 TSR2, 20S rRNA accumulation, homolog (S. cerevisiae) Tsr2 317418 NM_001115027 0005515 // protein binding // inferred from electronic annotation 1376043_at BI292073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292073 /DB_XREF=gi:14952218 /DB_XREF=UI-R-DN0-ciu-o-04-0-UI.s1 /CLONE=UI-R-DN0-ciu-o-04-0-UI /FEA=EST /CNT=7 /TID=Rn.20080.1 /TIER=ConsEnd /STK=5 /UG=Rn.20080 /UG_TITLE=ESTs BI292073 similar to PHD zinc finger containing protein JUNE1 MGC94192 360550 NM_001004272 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376044_at BE099774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099774 /DB_XREF=gi:8491654 /DB_XREF=UI-R-BJ1-atq-b-02-0-UI.s1 /CLONE=UI-R-BJ1-atq-b-02-0-UI /FEA=EST /CNT=7 /TID=Rn.18839.1 /TIER=ConsEnd /STK=5 /UG=Rn.18839 /UG_TITLE=ESTs BE099774 0016070 // RNA metabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376045_at AW529960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529960 /DB_XREF=gi:7172374 /DB_XREF=UI-R-C4-alc-c-10-0-UI.s1 /CLONE=UI-R-C4-alc-c-10-0-UI /FEA=EST /CNT=7 /TID=Rn.38784.1 /TIER=ConsEnd /STK=5 /UG=Rn.38784 /UG_TITLE=ESTs AW529960 1376046_at BF289012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289012 /DB_XREF=gi:11220082 /DB_XREF=EST453603 /CLONE=RGIHA23 /FEA=EST /CNT=7 /TID=Rn.24923.1 /TIER=ConsEnd /STK=5 /UG=Rn.24923 /UG_TITLE=ESTs BF289012 Hook homolog 3 (Drosophila) Hook3 306548 NM_001136098 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0007032 // endosome organization // inferred from electronic annotation /// 0007032 // endosome organization // not recorded /// 0007040 // lysosome organization // inferred from electronic annotation /// 0007040 // lysosome organization // not recorded /// 0008333 // endosome to lysosome transport // inferred from electronic annotation /// 0008333 // endosome to lysosome transport // not recorded /// 0031122 // cytoplasmic microtubule organization // inferred from electronic annotation /// 0031122 // cytoplasmic microtubule organization // not recorded /// 0045022 // early endosome to late endosome transport // inferred from electronic annotation /// 0045022 // early endosome to late endosome transport // not recorded /// 0051645 // Golgi localization // inferred from electronic annotation /// 0051645 // Golgi localization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005801 // cis-Golgi network // inferred from electronic annotation /// 0005801 // cis-Golgi network // not recorded /// 0030897 // HOPS complex // inferred from electronic annotation /// 0030897 // HOPS complex // not recorded /// 0070695 // FHF complex // inferred from electronic annotation /// 0070695 // FHF complex // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1376047_at BI285321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285321 /DB_XREF=gi:14938837 /DB_XREF=UI-R-DB0-byy-f-11-0-UI.s1 /CLONE=UI-R-DB0-byy-f-11-0-UI /FEA=EST /CNT=7 /TID=Rn.3668.1 /TIER=ConsEnd /STK=5 /UG=Rn.3668 /UG_TITLE=ESTs BI285321 3'-phosphoadenosine 5'-phosphosulfate synthase 2 Papss2 294103 NM_001106375 0000103 // sulfate assimilation // inferred from electronic annotation /// 0000103 // sulfate assimilation // not recorded /// 0007596 // blood coagulation // not recorded /// 0016310 // phosphorylation // not recorded /// 0060348 // bone development // not recorded 0004020 // adenylylsulfate kinase activity // inferred from electronic annotation /// 0004020 // adenylylsulfate kinase activity // not recorded /// 0004781 // sulfate adenylyltransferase (ATP) activity // inferred from electronic annotation /// 0004781 // sulfate adenylyltransferase (ATP) activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation 1376048_at BG373370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373370 /DB_XREF=gi:13269907 /DB_XREF=UI-R-CV1-brx-h-12-0-UI.s1 /CLONE=UI-R-CV1-brx-h-12-0-UI /FEA=EST /CNT=7 /TID=Rn.38113.1 /TIER=ConsEnd /STK=5 /UG=Rn.38113 /UG_TITLE=ESTs BG373370 guanylate cyclase activator 1B Guca1b 316218 NM_001108198 0007601 // visual perception // not recorded /// 0007602 // phototransduction // not recorded /// 0031279 // regulation of cyclase activity // not recorded /// 0031282 // regulation of guanylate cyclase activity // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0008048 // calcium sensitive guanylate cyclase activator activity // not recorded /// 0030249 // guanylate cyclase regulator activity // not recorded 1376049_at AA925805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925805 /DB_XREF=gi:4236996 /DB_XREF=UI-R-A1-et-g-09-0-UI.s1 /CLONE=UI-R-A1-et-g-09-0-UI /FEA=EST /CNT=7 /TID=Rn.7231.1 /TIER=ConsEnd /STK=5 /UG=Rn.7231 /UG_TITLE=ESTs AA925805 1376050_at AI177663 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177663 /DB_XREF=gi:3728301 /DB_XREF=EST221301 /CLONE=RPLCD80 /FEA=EST /CNT=7 /TID=Rn.15277.1 /TIER=ConsEnd /STK=5 /UG=Rn.15277 /UG_TITLE=ESTs AI177663 TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor Taf5 294018 NM_001106365 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005669 // transcription factor TFIID complex // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0015629 // actin cytoskeleton // not recorded /// 0033276 // transcription factor TFTC complex // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0004402 // histone acetyltransferase activity // not recorded /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0016986 // transcription initiation factor activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // not recorded 1376051_at BI293393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293393 /DB_XREF=gi:14954844 /DB_XREF=UI-R-DK0-cdo-f-12-0-UI.s1 /CLONE=UI-R-DK0-cdo-f-12-0-UI /FEA=EST /CNT=7 /TID=Rn.57632.1 /TIER=ConsEnd /STK=5 /UG=Rn.57632 /UG_TITLE=ESTs BI293393 crystallin, lambda 1 Cryl1 290277 NM_175757 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity 0003824 // catalytic activity // inferred from electronic annotation /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0050104 // L-gulonate 3-dehydrogenase activity // not recorded /// 0050104 // L-gulonate 3-dehydrogenase activity // inferred from sequence or structural similarity /// 0050104 // L-gulonate 3-dehydrogenase activity // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation /// 0070403 // NAD binding // not recorded /// 0070403 // NAD binding // inferred from sequence or structural similarity /// 0070403 // NAD binding // inferred from electronic annotation 1376052_at AW525031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525031 /DB_XREF=gi:7167416 /DB_XREF=UI-R-BJ0p-aim-a-11-0-UI.s1 /CLONE=UI-R-BJ0p-aim-a-11-0-UI /FEA=EST /CNT=7 /TID=Rn.39053.1 /TIER=ConsEnd /STK=5 /UG=Rn.39053 /UG_TITLE=ESTs, Highly similar to A40718 host cell factor C1 precursor (H.sapiens) AW525031 transmembrane protein 160 Tmem160 292654 NM_001106227 0005739 // mitochondrion // not recorded 1376053_at BM385144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385144 /DB_XREF=gi:18185197 /DB_XREF=UI-R-CN1-cjm-h-16-0-UI.s2 /CLONE=UI-R-CN1-cjm-h-16-0-UI /FEA=EST /CNT=7 /TID=Rn.24736.1 /TIER=ConsEnd /STK=5 /UG=Rn.24736 /UG_TITLE=ESTs, Weakly similar to RL34 RAT 60S RIBOSOMAL PROTEIN L34 (R.norvegicus) BM385144 1376054_at AI103054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103054 /DB_XREF=gi:3707656 /DB_XREF=EST212343 /CLONE=REMBW58 /FEA=EST /CNT=7 /TID=Rn.17553.1 /TIER=ConsEnd /STK=5 /UG=Rn.17553 /UG_TITLE=ESTs, Weakly similar to T21469 hypothetical protein F28C1.1 - Caenorhabditis elegans (C.elegans) AI103054 splicing factor, arginine/serine-rich 16 Sfrs16 499390 NM_001024294 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1376055_at AA859768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859768 /DB_XREF=gi:4230309 /DB_XREF=UI-R-E0-bx-d-12-0-UI.s1 /CLONE=UI-R-E0-bx-d-12-0-UI /FEA=EST /CNT=7 /TID=Rn.123.1 /TIER=ConsEnd /STK=5 /UG=Rn.123 /UG_TITLE=ESTs AA859768 minichromosome maintenance complex component 5 Mcm5 291885 NM_001106170 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded /// 0006270 // DNA-dependent DNA replication initiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1376056_at BF291214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291214 /DB_XREF=gi:11222284 /DB_XREF=EST455805 /CLONE=RGIIK25 /FEA=EST /CNT=7 /TID=Rn.16313.1 /TIER=ConsEnd /STK=5 /UG=Rn.16313 /UG_TITLE=ESTs, Weakly similar to T12540 hypothetical protein DKFZp434J214.1 (H.sapiens) BF291214 poly (ADP-ribose) polymerase family, member 10 LOC100362108 100362108 XM_002726944 /// XM_002729827 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from electronic annotation 1376057_at BG377379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377379 /DB_XREF=gi:13301851 /DB_XREF=UI-R-CU0-bvc-g-07-0-UI.s1 /CLONE=UI-R-CU0-bvc-g-07-0-UI /FEA=EST /CNT=7 /TID=Rn.24771.1 /TIER=ConsEnd /STK=5 /UG=Rn.24771 /UG_TITLE=ESTs BG377379 Phosphodiesterase 8A Pde8a 308776 NM_198767 0000160 // two-component signal transduction system (phosphorelay) // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0000156 // two-component response regulator activity // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from electronic annotation /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376058_at AI705731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI705731 /DB_XREF=gi:4993631 /DB_XREF=UI-R-AD1-zq-b-11-0-UI.s1 /CLONE=UI-R-AD1-zq-b-11-0-UI /FEA=EST /CNT=7 /TID=Rn.24919.1 /TIER=ConsEnd /STK=5 /UG=Rn.24919 /UG_TITLE=ESTs AI705731 mitochondrial tumor suppressor 1 Mtus1 306487 NM_178093 0007049 // cell cycle // inferred from electronic annotation /// 0071375 // cellular response to peptide hormone stimulus // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1376059_at AI716607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716607 /DB_XREF=gi:5033863 /DB_XREF=UI-R-Y0-acc-b-03-0-UI.s1 /CLONE=UI-R-Y0-acc-b-03-0-UI /FEA=EST /CNT=7 /TID=Rn.41171.1 /TIER=ConsEnd /STK=5 /UG=Rn.41171 /UG_TITLE=ESTs, Highly similar to T00377 KIAA0642 protein (H.sapiens) AI716607 rCG23949-like LOC100362458 100362458 XR_086345 /// XR_086664 1376060_at BF416794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416794 /DB_XREF=gi:11404783 /DB_XREF=UI-R-CA0-bkv-a-11-0-UI.s1 /CLONE=UI-R-CA0-bkv-a-11-0-UI /FEA=EST /CNT=7 /TID=Rn.23388.1 /TIER=ConsEnd /STK=5 /UG=Rn.23388 /UG_TITLE=ESTs, Moderately similar to YA00_HUMAN HYPOTHETICAL PROTEIN CGI-100 PRECURSOR (H.sapiens) BF416794 1376061_at AW525033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525033 /DB_XREF=gi:7167418 /DB_XREF=UI-R-BJ0p-aim-b-01-0-UI.s1 /CLONE=UI-R-BJ0p-aim-b-01-0-UI /FEA=EST /CNT=7 /TID=Rn.12838.1 /TIER=ConsEnd /STK=5 /UG=Rn.12838 /UG_TITLE=ESTs AW525033 similar to RIKEN cDNA 3010026O09 RGD1564036 497895 NM_001109030 1376062_at BG375315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375315 /DB_XREF=gi:13299787 /DB_XREF=UI-R-CV1-bsz-a-02-0-UI.s1 /CLONE=UI-R-CV1-bsz-a-02-0-UI /FEA=EST /CNT=7 /TID=Rn.40901.1 /TIER=ConsEnd /STK=5 /UG=Rn.40901 /UG_TITLE=ESTs BG375315 syndecan 1 Sdc1 25216 NM_013026 0001657 // ureteric bud development // inferred from expression pattern /// 0006954 // inflammatory response // inferred from direct assay /// 0007155 // cell adhesion // non-traceable author statement /// 0007267 // cell-cell signaling // non-traceable author statement /// 0009636 // response to toxin // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0042060 // wound healing // inferred from expression pattern /// 0042476 // odontogenesis // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0048627 // myoblast development // inferred from electronic annotation /// 0048627 // myoblast development // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from expression pattern /// 0055002 // striated muscle cell development // inferred from electronic annotation /// 0055002 // striated muscle cell development // not recorded /// 0060009 // Sertoli cell development // inferred from expression pattern /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0001931 // uropod // inferred from mutant phenotype /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0001948 // glycoprotein binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0050840 // extracellular matrix binding // traceable author statement 1376063_at AI599019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599019 /DB_XREF=gi:4608067 /DB_XREF=EST250722 /CLONE=REMEA32 /FEA=EST /CNT=7 /TID=Rn.22149.1 /TIER=ConsEnd /STK=5 /UG=Rn.22149 /UG_TITLE=ESTs, Weakly similar to 1901177A wnt-2 gene (R.norvegicus) AI599019 wingless-type MMTV integration site family, member 6 Wnt6 316526 NM_001108226 0007223 // Wnt receptor signaling pathway, calcium modulating pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009798 // axis specification // not recorded /// 0010628 // positive regulation of gene expression // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0035148 // tube formation // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0048754 // branching morphogenesis of a tube // not recorded /// 0060684 // epithelial-mesenchymal cell signaling // not recorded /// 0070172 // positive regulation of tooth mineralization // not recorded /// 0072080 // nephron tubule development // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0031012 // extracellular matrix // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376064_at AW530352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530352 /DB_XREF=gi:7172807 /DB_XREF=UI-R-BU0-amw-b-10-0-UI.s1 /CLONE=UI-R-BU0-amw-b-10-0-UI /FEA=EST /CNT=7 /TID=Rn.47437.1 /TIER=ConsEnd /STK=5 /UG=Rn.47437 /UG_TITLE=ESTs AW530352 G protein-coupled receptor 137 Gpr137 689984 NM_001109562 0004872 // receptor activity // inferred from electronic annotation 1376065_at AI058889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058889 /DB_XREF=gi:3332666 /DB_XREF=UI-R-C1-kq-h-02-0-UI.s1 /CLONE=UI-R-C1-kq-h-02-0-UI /FEA=EST /CNT=7 /TID=Rn.15120.1 /TIER=ConsEnd /STK=5 /UG=Rn.15120 /UG_TITLE=ESTs AI058889 RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) Rrs1 297784 NM_001079699 0007080 // mitotic metaphase plate congression // not recorded /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0000794 // condensed nuclear chromosome // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 1376066_at AI103572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103572 /DB_XREF=gi:3708104 /DB_XREF=EST212861 /CLONE=REMCD61 /FEA=EST /CNT=7 /TID=Rn.6865.1 /TIER=ConsEnd /STK=5 /UG=Rn.6865 /UG_TITLE=ESTs AI103572 Rho family GTPase 3 Rnd3 295588 NM_001007641 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1376067_at AA800637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800637 /DB_XREF=gi:4131522 /DB_XREF=EST190134 /CLONE=RLUAB84 /FEA=EST /CNT=7 /TID=Rn.2033.1 /TIER=ConsEnd /STK=5 /UG=Rn.2033 /UG_TITLE=ESTs, Highly similar to T46494 hypothetical protein DKFZp434M0572.1 (H.sapiens) AA800637 CCR4-NOT transcription complex, subunit 2 Cnot2 299805 NM_001011988 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1376068_at BF283674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283674 /DB_XREF=gi:11214744 /DB_XREF=EST448265 /CLONE=RGIEF34 /FEA=EST /CNT=7 /TID=Rn.17162.1 /TIER=ConsEnd /STK=5 /UG=Rn.17162 /UG_TITLE=ESTs, Weakly similar to coagulation factor Xa (R.norvegicus) BF283674 Proline rich 12 Prr12 361569 XM_001080668 /// XM_341852 0003677 // DNA binding // inferred from electronic annotation 1376069_at BF414050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414050 /DB_XREF=gi:11402039 /DB_XREF=UI-R-BJ2-bol-g-11-0-UI.s1 /CLONE=UI-R-BJ2-bol-g-11-0-UI /FEA=EST /CNT=7 /TID=Rn.11861.1 /TIER=ConsEnd /STK=5 /UG=Rn.11861 /UG_TITLE=ESTs BF414050 Proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 Psmd11 303353 NM_001107027 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1376070_at AI236623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236623 /DB_XREF=gi:3830129 /DB_XREF=EST233185 /CLONE=ROVDI45 /FEA=EST /CNT=7 /TID=Rn.25183.1 /TIER=ConsEnd /STK=5 /UG=Rn.25183 /UG_TITLE=ESTs, Highly similar to FK38_HUMAN 38 KDA FK-506 BINDING PROTEIN HOMOLOG (H.sapiens) AI236623 FK506 binding protein 8 Fkbp8 290652 NM_001037180 0001708 // cell fate specification // inferred from electronic annotation /// 0001708 // cell fate specification // not recorded /// 0006457 // protein folding // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // not recorded /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0021904 // dorsal/ventral neural tube patterning // inferred from electronic annotation /// 0021904 // dorsal/ventral neural tube patterning // not recorded /// 0021915 // neural tube development // inferred from electronic annotation /// 0021915 // neural tube development // not recorded /// 0030510 // regulation of BMP signaling pathway // not recorded /// 0030510 // regulation of BMP signaling pathway // inferred from electronic annotation /// 0030513 // positive regulation of BMP signaling pathway // inferred from electronic annotation /// 0030513 // positive regulation of BMP signaling pathway // not recorded /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded /// 0043010 // camera-type eye development // inferred from electronic annotation /// 0043010 // camera-type eye development // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005740 // mitochondrial envelope // not recorded /// 0005740 // mitochondrial envelope // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1376071_at BM389326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389326 /DB_XREF=gi:18189379 /DB_XREF=UI-R-DZ0-cko-n-04-0-UI.s1 /CLONE=UI-R-DZ0-cko-n-04-0-UI /FEA=EST /CNT=9 /TID=Rn.3101.1 /TIER=ConsEnd /STK=5 /UG=Rn.3101 /UG_TITLE=ESTs BM389326 1376072_at AI170779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170779 /DB_XREF=gi:4134544 /DB_XREF=EST216718 /CLONE=RMUBB40 /FEA=EST /CNT=9 /TID=Rn.22362.1 /TIER=ConsEnd /STK=5 /UG=Rn.22362 /UG_TITLE=ESTs AI170779 family with sequence similarity 174, member A Fam174a 301634 NM_001012350 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1376073_at BI285936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285936 /DB_XREF=gi:14940085 /DB_XREF=UI-R-CX0s-ccp-e-08-0-UI.s1 /CLONE=UI-R-CX0s-ccp-e-08-0-UI /FEA=EST /CNT=9 /TID=Rn.50818.1 /TIER=ConsEnd /STK=5 /UG=Rn.50818 /UG_TITLE=ESTs BI285936 sel-1 suppressor of lin-12-like (C. elegans) Sel1l 314352 NM_177933 0007219 // Notch signaling pathway // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1376074_at AA942690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA942690 /DB_XREF=gi:3102606 /DB_XREF=EST198189 /CLONE=RBRAA22 /FEA=EST /CNT=9 /TID=Rn.7938.1 /TIER=ConsEnd /STK=5 /UG=Rn.7938 /UG_TITLE=ESTs AA942690 RAB11 family interacting protein 4 (class II) Rab11fip4 303337 NM_001107023 0000910 // cytokinesis // not recorded /// 0015031 // protein transport // inferred from electronic annotation 0030496 // midbody // not recorded /// 0032154 // cleavage furrow // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0055038 // recycling endosome membrane // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017137 // Rab GTPase binding // not recorded /// 0030306 // ADP-ribosylation factor binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1376075_at BM385544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385544 /DB_XREF=gi:18185597 /DB_XREF=UI-R-DM1-ckd-i-11-0-UI.s1 /CLONE=UI-R-DM1-ckd-i-11-0-UI /FEA=EST /CNT=8 /TID=Rn.13914.1 /TIER=ConsEnd /STK=5 /UG=Rn.13914 /UG_TITLE=ESTs BM385544 presenilin 1 Psen1 29192 NM_019163 0000045 // autophagic vacuole assembly // inferred from electronic annotation /// 0000045 // autophagic vacuole assembly // not recorded /// 0000186 // activation of MAPKK activity // inferred from electronic annotation /// 0000186 // activation of MAPKK activity // not recorded /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001708 // cell fate specification // inferred from electronic annotation /// 0001708 // cell fate specification // not recorded /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001756 // somitogenesis // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // not recorded /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0001947 // heart looping // inferred from electronic annotation /// 0001947 // heart looping // not recorded /// 0002244 // hemopoietic progenitor cell differentiation // inferred from electronic annotation /// 0002244 // hemopoietic progenitor cell differentiation // not recorded /// 0002286 // T cell activation involved in immune response // inferred from electronic annotation /// 0002286 // T cell activation involved in immune response // not recorded /// 0002573 // myeloid leukocyte differentiation // inferred from electronic annotation /// 0002573 // myeloid leukocyte differentiation // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0006486 // protein glycosylation // not recorded /// 0006509 // membrane protein ectodomain proteolysis // inferred from mutant phenotype /// 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0006509 // membrane protein ectodomain proteolysis // inferred from sequence or structural similarity /// 0006509 // membrane protein ectodomain proteolysis // inferred from electronic annotation /// 0006839 // mitochondrial transport // inferred from electronic annotation /// 0006839 // mitochondrial transport // not recorded /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0006914 // autophagy // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from direct assay /// 0006916 // anti-apoptosis // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007176 // regulation of epidermal growth factor receptor activity // inferred from electronic annotation /// 0007176 // regulation of epidermal growth factor receptor activity // not recorded /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007219 // Notch signaling pathway // not recorded /// 0007220 // Notch receptor processing // inferred from electronic annotation /// 0007220 // Notch receptor processing // not recorded /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007611 // learning or memory // not recorded /// 0007611 // learning or memory // inferred from electronic annotation /// 0007613 // memory // inferred from electronic annotation /// 0007613 // memory // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0015031 // protein transport // not recorded /// 0015813 // L-glutamate transport // inferred from electronic annotation /// 0015813 // L-glutamate transport // not recorded /// 0015871 // choline transport // inferred from electronic annotation /// 0015871 // choline transport // not recorded /// 0016080 // synaptic vesicle targeting // inferred from electronic annotation /// 0016080 // synaptic vesicle targeting // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0016485 // protein processing // inferred from direct assay /// 0016485 // protein processing // not recorded /// 0016485 // protein processing // inferred from sequence or structural similarity /// 0016485 // protein processing // inferred from electronic annotation /// 0021795 // cerebral cortex cell migration // inferred from electronic annotation /// 0021795 // cerebral cortex cell migration // not recorded /// 0021870 // Cajal-Retzius cell differentiation // inferred from electronic annotation /// 0021870 // Cajal-Retzius cell differentiation // not recorded /// 0021904 // dorsal/ventral neural tube patterning // inferred from electronic annotation /// 0021904 // dorsal/ventral neural tube patterning // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0022008 // neurogenesis // inferred from electronic annotation /// 0022008 // neurogenesis // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0031293 // membrane protein intracellular domain proteolysis // not recorded /// 0032469 // endoplasmic reticulum calcium ion homeostasis // not recorded /// 0032469 // endoplasmic reticulum calcium ion homeostasis // inferred from electronic annotation /// 0035282 // segmentation // not recorded /// 0035282 // segmentation // inferred from electronic annotation /// 0040011 // locomotion // inferred from electronic annotation /// 0040011 // locomotion // not recorded /// 0042325 // regulation of phosphorylation // inferred from electronic annotation /// 0042325 // regulation of phosphorylation // not recorded /// 0042462 // eye photoreceptor cell development // non-traceable author statement /// 0042640 // anagen // inferred from electronic annotation /// 0042640 // anagen // not recorded /// 0042987 // amyloid precursor protein catabolic process // inferred from electronic annotation /// 0042987 // amyloid precursor protein catabolic process // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043085 // positive regulation of catalytic activity // not recorded /// 0043085 // positive regulation of catalytic activity // inferred from sequence or structural similarity /// 0043085 // positive regulation of catalytic activity // inferred from electronic annotation /// 0043393 // regulation of protein binding // inferred from electronic annotation /// 0043393 // regulation of protein binding // not recorded /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from mutant phenotype /// 0044267 // cellular protein metabolic process // not recorded /// 0044267 // cellular protein metabolic process // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // not recorded /// 0048538 // thymus development // inferred from electronic annotation /// 0048538 // thymus development // not recorded /// 0048666 // neuron development // inferred from electronic annotation /// 0048666 // neuron development // not recorded /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // not recorded /// 0048854 // brain morphogenesis // inferred from electronic annotation /// 0048854 // brain morphogenesis // not recorded /// 0050435 // beta-amyloid metabolic process // inferred from electronic annotation /// 0050435 // beta-amyloid metabolic process // not recorded /// 0050673 // epithelial cell proliferation // inferred from electronic annotation /// 0050673 // epithelial cell proliferation // not recorded /// 0050771 // negative regulation of axonogenesis // inferred from electronic annotation /// 0050771 // negative regulation of axonogenesis // not recorded /// 0050820 // positive regulation of coagulation // inferred from electronic annotation /// 0050820 // positive regulation of coagulation // not recorded /// 0050852 // T cell receptor signaling pathway // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // not recorded /// 0051402 // neuron apoptosis // not recorded /// 0051402 // neuron apoptosis // inferred from electronic annotation /// 0051563 // smooth endoplasmic reticulum calcium ion homeostasis // inferred from electronic annotation /// 0051563 // smooth endoplasmic reticulum calcium ion homeostasis // not recorded /// 0051604 // protein maturation // not recorded /// 0051604 // protein maturation // inferred from electronic annotation /// 0051605 // protein maturation by peptide bond cleavage // inferred from electronic annotation /// 0051605 // protein maturation by peptide bond cleavage // not recorded /// 0051966 // regulation of synaptic transmission, glutamatergic // inferred from electronic annotation /// 0051966 // regulation of synaptic transmission, glutamatergic // not recorded /// 0060075 // regulation of resting membrane potential // inferred from electronic annotation /// 0060075 // regulation of resting membrane potential // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0000776 // kinetochore // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005640 // nuclear outer membrane // inferred from electronic annotation /// 0005640 // nuclear outer membrane // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005790 // smooth endoplasmic reticulum // not recorded /// 0005791 // rough endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0030425 // dendrite // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0030426 // growth cone // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0031594 // neuromuscular junction // inferred from direct assay /// 0031965 // nuclear membrane // not recorded /// 0035253 // ciliary rootlet // inferred from electronic annotation /// 0035253 // ciliary rootlet // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043198 // dendritic shaft // inferred from electronic annotation /// 0043198 // dendritic shaft // not recorded /// 0043227 // membrane-bounded organelle // inferred from electronic annotation /// 0043227 // membrane-bounded organelle // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0070765 // gamma-secretase complex // not recorded 0004175 // endopeptidase activity // inferred from direct assay /// 0004175 // endopeptidase activity // not recorded /// 0004175 // endopeptidase activity // inferred from electronic annotation /// 0005262 // calcium channel activity // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0008233 // peptidase activity // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // not recorded /// 0045296 // cadherin binding // inferred from electronic annotation /// 0045296 // cadherin binding // not recorded 1376076_at BI282296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282296 /DB_XREF=gi:14932923 /DB_XREF=UI-R-CU0s-cby-h-07-0-UI.s1 /CLONE=UI-R-CU0s-cby-h-07-0-UI /FEA=EST /CNT=8 /TID=Rn.6259.1 /TIER=ConsEnd /STK=5 /UG=Rn.6259 /UG_TITLE=ESTs, Moderately similar to HIG2_HUMAN HYPOXIA-INDUCIBLE PROTEIN 2 (H.sapiens) BI282296 1376077_at BG374774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374774 /DB_XREF=gi:13299246 /DB_XREF=UI-R-CV1-bsv-c-08-0-UI.s1 /CLONE=UI-R-CV1-bsv-c-08-0-UI /FEA=EST /CNT=8 /TID=Rn.21827.1 /TIER=ConsEnd /STK=5 /UG=Rn.21827 /UG_TITLE=ESTs BG374774 max dimerization protein 1 Mxd1 362391 NM_001100749 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1376078_at BI296274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296274 /DB_XREF=gi:14960555 /DB_XREF=UI-R-DK0-cey-d-07-0-UI.s1 /CLONE=UI-R-DK0-cey-d-07-0-UI /FEA=EST /CNT=7 /TID=Rn.22415.1 /TIER=ConsEnd /STK=5 /UG=Rn.22415 /UG_TITLE=ESTs BI296274 1376079_at BI295806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295806 /DB_XREF=gi:14959622 /DB_XREF=UI-R-DK0-cfa-h-02-0-UI.s1 /CLONE=UI-R-DK0-cfa-h-02-0-UI /FEA=EST /CNT=7 /TID=Rn.23886.1 /TIER=ConsEnd /STK=5 /UG=Rn.23886 /UG_TITLE=ESTs, Weakly similar to DnaJ (Hsp40) homolog, subfamily B, member 9; Microvascular endothelial differentiation gene 1 (Rattus norvegicus) (R.norvegicus) BI295806 DnaJ (Hsp40) homolog, subfamily C, member 1-like LOC100360412 100360412 XM_002728514 1376080_at BF409812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409812 /DB_XREF=gi:11397787 /DB_XREF=UI-R-CA1-bjr-a-12-0-UI.s1 /CLONE=UI-R-CA1-bjr-a-12-0-UI /FEA=EST /CNT=7 /TID=Rn.32217.1 /TIER=ConsEnd /STK=5 /UG=Rn.32217 /UG_TITLE=ESTs BF409812 REST corepressor 1 Rcor1 314458 NM_001108060 0005515 // protein binding // not recorded 1376081_at AI059661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059661 /DB_XREF=gi:3333438 /DB_XREF=UI-R-C1-lg-a-09-0-UI.s1 /CLONE=UI-R-C1-lg-a-09-0-UI /FEA=EST /CNT=7 /TID=Rn.17983.1 /TIER=ConsEnd /STK=5 /UG=Rn.17983 /UG_TITLE=ESTs AI059661 leucine carboxyl methyltransferase 2 Lcmt2 296098 NM_001011956 0008033 // tRNA processing // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1376082_at BE107033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107033 /DB_XREF=gi:8499138 /DB_XREF=UI-R-BS1-ayp-a-04-0-UI.s1 /CLONE=UI-R-BS1-ayp-a-04-0-UI /FEA=EST /CNT=7 /TID=Rn.20198.1 /TIER=ConsEnd /STK=5 /UG=Rn.20198 /UG_TITLE=ESTs BE107033 MDS1 and EVI1 complex locus Mecom 294924 NM_001106423 0001701 // in utero embryonic development // not recorded /// 0001780 // neutrophil homeostasis // not recorded /// 0006954 // inflammatory response // not recorded /// 0009605 // response to external stimulus // not recorded /// 0009617 // response to bacterium // not recorded /// 0009791 // post-embryonic development // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0030900 // forebrain development // not recorded /// 0035115 // embryonic forelimb morphogenesis // not recorded /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0043069 // negative regulation of programmed cell death // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046329 // negative regulation of JNK cascade // not recorded /// 0051726 // regulation of cell cycle // not recorded /// 0060039 // pericardium development // not recorded /// 0071425 // hemopoietic stem cell proliferation // not recorded 0000118 // histone deacetylase complex // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016607 // nuclear speck // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1376083_at BE112924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112924 /DB_XREF=gi:8505029 /DB_XREF=UI-R-BJ1-awa-d-09-0-UI.s1 /CLONE=UI-R-BJ1-awa-d-09-0-UI /FEA=EST /CNT=7 /TID=Rn.24475.1 /TIER=ConsEnd /STK=5 /UG=Rn.24475 /UG_TITLE=ESTs, Highly similar to YC27_HUMAN HYPOTHETICAL PROTEIN CGI-27 (H.sapiens) BE112924 Mediator of cell motility 1 Memo1 298787 NM_001029917 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded 1376084_a_at AI385371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385371 /DB_XREF=gi:4198153 /DB_XREF=UI-R-C2-mu-g-07-0-UI.s2 /CLONE=UI-R-C2-mu-g-07-0-UI /FEA=EST /CNT=7 /TID=Rn.24582.1 /TIER=ConsEnd /STK=5 /UG=Rn.24582 /UG_TITLE=ESTs, Weakly similar to T27859 hypothetical protein ZK430.5 - Caenorhabditis elegans (C.elegans) AI385371 extra spindle pole bodies homolog 1 (S. cerevisiae) Espl1 315330 NM_001170602 /// XM_001067790 /// XM_235691 0000070 // mitotic sister chromatid segregation // not recorded /// 0000212 // meiotic spindle organization // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0007127 // meiosis I // not recorded /// 0045143 // homologous chromosome segregation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005813 // centrosome // not recorded 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation 1376085_at AA849731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849731 /DB_XREF=gi:2937271 /DB_XREF=EST192498 /CLONE=RMUAI22 /FEA=EST /CNT=7 /TID=Rn.6505.1 /TIER=ConsEnd /STK=5 /UG=Rn.6505 /UG_TITLE=ESTs AA849731 transmembrane protein 185A Tmem185a 309357 NM_001135712 1376086_at AW528625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528625 /DB_XREF=gi:7171039 /DB_XREF=UI-R-BO1-ajr-e-06-0-UI.s1 /CLONE=UI-R-BO1-ajr-e-06-0-UI /FEA=EST /CNT=7 /TID=Rn.14630.1 /TIER=ConsEnd /STK=5 /UG=Rn.14630 /UG_TITLE=ESTs, Weakly similar to F38A5.1.p (Caenorhabditis elegans) (C.elegans) AW528625 UFM1-specific peptidase 2 Ufsp2 361151 NM_001014142 0008152 // metabolic process // not recorded 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016790 // thiolester hydrolase activity // inferred from electronic annotation /// 0016790 // thiolester hydrolase activity // not recorded /// 0019783 // small conjugating protein-specific protease activity // inferred from electronic annotation /// 0019783 // small conjugating protein-specific protease activity // not recorded 1376087_at BM386653 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386653 /DB_XREF=gi:18186706 /DB_XREF=UI-R-CN1-cjg-j-07-0-UI.s1 /CLONE=UI-R-CN1-cjg-j-07-0-UI /FEA=EST /CNT=7 /TID=Rn.28889.1 /TIER=ConsEnd /STK=5 /UG=Rn.28889 /UG_TITLE=ESTs BM386653 family with sequence similarity 134, member C Fam134c 360632 NM_001135804 1376088_at AA817715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817715 /DB_XREF=gi:4198244 /DB_XREF=UI-R-A0-aa-e-10-0-UI.s1 /CLONE=UI-R-A0-aa-e-10-0-UI /FEA=EST /CNT=7 /TID=Rn.22426.1 /TIER=ConsEnd /STK=5 /UG=Rn.22426 /UG_TITLE=ESTs, Weakly similar to T32897 hypothetical protein C42C1.10 - Caenorhabditis elegans (C.elegans) AA817715 solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 Slc25a19 303676 NM_001007674 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1376089_at BI294974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294974 /DB_XREF=gi:14957954 /DB_XREF=UI-R-DK0-cee-c-10-0-UI.s1 /CLONE=UI-R-DK0-cee-c-10-0-UI /FEA=EST /CNT=7 /TID=Rn.18386.1 /TIER=ConsEnd /STK=5 /UG=Rn.18386 /UG_TITLE=ESTs BI294974 1376090_at AW252828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252828 /DB_XREF=gi:6596419 /DB_XREF=UI-R-BJ0-ael-b-12-0-UI.s1 /CLONE=UI-R-BJ0-ael-b-12-0-UI /FEA=EST /CNT=7 /TID=Rn.27365.1 /TIER=ConsEnd /STK=5 /UG=Rn.27365 /UG_TITLE=ESTs AW252828 THUMP domain containing 2 Thumpd2 313851 NM_001012108 /// NM_001163506 1376091_at AA963616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963616 /DB_XREF=gi:4278519 /DB_XREF=UI-R-E1-fy-c-04-0-UI.s2 /CLONE=UI-R-E1-fy-c-04-0-UI /FEA=EST /CNT=7 /TID=Rn.43720.1 /TIER=ConsEnd /STK=5 /UG=Rn.43720 /UG_TITLE=ESTs, Highly similar to PUR8 MOUSE ADENYLOSUCCINATE LYASE (M.musculus) AA963616 adenylosuccinate lyase Adsl 315150 NM_001130503 0001666 // response to hypoxia // inferred from expression pattern /// 0006163 // purine nucleotide metabolic process // inferred from direct assay /// 0006163 // purine nucleotide metabolic process // inferred from mutant phenotype /// 0006167 // AMP biosynthetic process // not recorded /// 0007584 // response to nutrient // inferred from direct assay /// 0009060 // aerobic respiration // inferred from mutant phenotype /// 0009152 // purine ribonucleotide biosynthetic process // inferred from electronic annotation /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // not recorded /// 0051262 // protein tetramerization // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004018 // N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity // inferred from direct assay /// 0004018 // N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity // inferred from electronic annotation /// 0004018 // N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity // inferred from mutant phenotype /// 0004018 // N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity // not recorded /// 0016829 // lyase activity // inferred from electronic annotation 1376092_at BF396614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396614 /DB_XREF=gi:11381589 /DB_XREF=UI-R-BS2-bea-b-08-0-UI.s1 /CLONE=UI-R-BS2-bea-b-08-0-UI /FEA=EST /CNT=7 /TID=Rn.11843.1 /TIER=ConsEnd /STK=5 /UG=Rn.11843 /UG_TITLE=ESTs BF396614 1376093_at BG375754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375754 /DB_XREF=gi:13300226 /DB_XREF=UI-R-CS0-btf-a-06-0-UI.s1 /CLONE=UI-R-CS0-btf-a-06-0-UI /FEA=EST /CNT=7 /TID=Rn.33171.1 /TIER=ConsEnd /STK=5 /UG=Rn.33171 /UG_TITLE=ESTs BG375754 molybdenum cofactor synthesis 1 Mocs1 301221 NM_001106881 0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from electronic annotation /// 0006777 // Mo-molybdopterin cofactor biosynthetic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0032324 // molybdopterin cofactor biosynthetic process // not recorded 0019008 // molybdopterin synthase complex // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // not recorded 1376094_at AA925490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925490 /DB_XREF=gi:4236681 /DB_XREF=UI-R-A1-ep-b-11-0-UI.s1 /CLONE=UI-R-A1-ep-b-11-0-UI /FEA=EST /CNT=7 /TID=Rn.9467.1 /TIER=ConsEnd /STK=5 /UG=Rn.9467 /UG_TITLE=ESTs AA925490 histidine triad nucleotide binding protein 3 Hint3 246769 XM_001055373 /// XM_341742 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1376095_at BF401491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401491 /DB_XREF=gi:11389466 /DB_XREF=UI-R-CA0-bgl-b-12-0-UI.s1 /CLONE=UI-R-CA0-bgl-b-12-0-UI /FEA=EST /CNT=7 /TID=Rn.40972.1 /TIER=ConsEnd /STK=5 /UG=Rn.40972 /UG_TITLE=ESTs BF401491 1376096_a_at BE108246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108246 /DB_XREF=gi:8500351 /DB_XREF=UI-R-BS1-ayx-a-11-0-UI.s1 /CLONE=UI-R-BS1-ayx-a-11-0-UI /FEA=EST /CNT=7 /TID=Rn.23319.1 /TIER=ConsEnd /STK=5 /UG=Rn.23319 /UG_TITLE=ESTs BE108246 1376097_at BF416935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416935 /DB_XREF=gi:11404924 /DB_XREF=UI-R-CN0-bla-g-05-0-UI.s1 /CLONE=UI-R-CN0-bla-g-05-0-UI /FEA=EST /CNT=7 /TID=Rn.20591.1 /TIER=ConsEnd /STK=5 /UG=Rn.20591 /UG_TITLE=ESTs BF416935 1376098_a_at BF282304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282304 /DB_XREF=gi:11213475 /DB_XREF=EST446996 /CLONE=RGIDN03 /FEA=EST /CNT=7 /TID=Rn.2799.1 /TIER=ConsEnd /STK=5 /UG=Rn.2799 /UG_TITLE=ESTs BF282304 1376099_at AW254017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254017 /DB_XREF=gi:6597608 /DB_XREF=UI-R-BJ0-aeo-b-12-0-UI.s1 /CLONE=UI-R-BJ0-aeo-b-12-0-UI /FEA=EST /CNT=7 /TID=Rn.40162.1 /TIER=ConsEnd /STK=5 /UG=Rn.40162 /UG_TITLE=ESTs AW254017 Collagen, type V, alpha 1 Col5a1 85490 NM_134452 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0030199 // collagen fibril organization // not recorded /// 0032964 // collagen biosynthetic process // inferred from electronic annotation /// 0032964 // collagen biosynthetic process // not recorded /// 0035313 // wound healing, spreading of epidermal cells // inferred from electronic annotation /// 0035313 // wound healing, spreading of epidermal cells // not recorded /// 0043206 // fibril organization // inferred from electronic annotation /// 0043206 // fibril organization // not recorded /// 0043588 // skin development // inferred from electronic annotation /// 0043588 // skin development // not recorded /// 0045112 // integrin biosynthetic process // inferred from electronic annotation /// 0045112 // integrin biosynthetic process // not recorded /// 0048592 // eye morphogenesis // inferred from electronic annotation /// 0048592 // eye morphogenesis // not recorded /// 0051128 // regulation of cellular component organization // inferred from electronic annotation /// 0051128 // regulation of cellular component organization // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen // inferred from electronic annotation /// 0005581 // collagen // not recorded /// 0005588 // collagen type V // not recorded /// 0005588 // collagen type V // traceable author statement /// 0005588 // collagen type V // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008201 // heparin binding // inferred from direct assay /// 0008201 // heparin binding // not recorded /// 0008201 // heparin binding // inferred from electronic annotation /// 0043394 // proteoglycan binding // inferred from electronic annotation /// 0043394 // proteoglycan binding // not recorded /// 0048407 // platelet-derived growth factor binding // inferred from electronic annotation /// 0048407 // platelet-derived growth factor binding // not recorded 1376100_at BI274903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274903 /DB_XREF=gi:14886250 /DB_XREF=UI-R-CW0-bwe-e-01-0-UI.s1 /CLONE=UI-R-CW0-bwe-e-01-0-UI /FEA=EST /CNT=7 /TID=Rn.40800.1 /TIER=ConsEnd /STK=5 /UG=Rn.40800 /UG_TITLE=ESTs, Moderately similar to A25113 tubulin beta chain 15 - rat (R.norvegicus) BI274903 tubulin, beta 6 Tubb6 307351 NM_001025675 0007017 // microtubule-based process // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1376101_at AI228256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228256 /DB_XREF=gi:4135333 /DB_XREF=EST224951 /CLONE=RBRCS47 /FEA=EST /CNT=6 /TID=Rn.9492.1 /TIER=ConsEnd /STK=5 /UG=Rn.9492 /UG_TITLE=ESTs AI228256 1376102_at BI292351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292351 /DB_XREF=gi:14952751 /DB_XREF=UI-R-DO0-ciw-l-06-0-UI.s1 /CLONE=UI-R-DO0-ciw-l-06-0-UI /FEA=EST /CNT=6 /TID=Rn.15881.1 /TIER=ConsEnd /STK=5 /UG=Rn.15881 /UG_TITLE=ESTs BI292351 transmembrane BAX inhibitor motif containing 1 Tmbim1 316516 NM_001007713 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1376103_at AA946360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946360 /DB_XREF=gi:3106276 /DB_XREF=EST201859 /CLONE=RLUBH21 /FEA=EST /CNT=6 /TID=Rn.54377.1 /TIER=ConsEnd /STK=5 /UG=Rn.54377 /UG_TITLE=ESTs AA946360 1376104_at BG381010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381010 /DB_XREF=gi:13305482 /DB_XREF=UI-R-CT0-bug-a-12-0-UI.s1 /CLONE=UI-R-CT0-bug-a-12-0-UI /FEA=EST /CNT=6 /TID=Rn.24141.1 /TIER=ConsEnd /STK=5 /UG=Rn.24141 /UG_TITLE=ESTs BG381010 similar to KIAA0802 protein RGD1308319 316764 XM_002727262 /// XM_237548 1376105_at AI599143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599143 /DB_XREF=gi:4608191 /DB_XREF=EST250846 /CLONE=REMEC27 /FEA=EST /CNT=6 /TID=Rn.8999.1 /TIER=ConsEnd /STK=5 /UG=Rn.8999 /UG_TITLE=ESTs AI599143 collagen, type XIV, alpha 1 Col14a1 314981 NM_001130548 0007155 // cell adhesion // inferred from electronic annotation 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0005198 // structural molecule activity // inferred from electronic annotation 1376106_at AI010157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010157 /DB_XREF=gi:3223989 /DB_XREF=EST204608 /CLONE=RLUBU45 /FEA=EST /CNT=6 /TID=Rn.17530.1 /TIER=ConsEnd /STK=5 /UG=Rn.17530 /UG_TITLE=ESTs AI010157 transmembrane protein 178 Tmem178 362691 NM_001004282 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1376107_at BI294839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294839 /DB_XREF=gi:14957684 /DB_XREF=UI-R-DK0-cec-g-06-0-UI.s1 /CLONE=UI-R-DK0-cec-g-06-0-UI /FEA=EST /CNT=6 /TID=Rn.37610.1 /TIER=ConsEnd /STK=5 /UG=Rn.37610 /UG_TITLE=ESTs, Highly similar to ARG2 RAT ARGINASE II PRECURSOR (R.norvegicus) BI294839 1376108_at AI030915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030915 /DB_XREF=gi:3248741 /DB_XREF=UI-R-C0-jf-e-10-0-UI.s1 /CLONE=UI-R-C0-jf-e-10-0-UI /FEA=EST /CNT=6 /TID=Rn.18629.1 /TIER=ConsEnd /STK=5 /UG=Rn.18629 /UG_TITLE=ESTs AI030915 1376109_at BM387711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387711 /DB_XREF=gi:18187764 /DB_XREF=UI-R-CN1-cjj-j-06-0-UI.s1 /CLONE=UI-R-CN1-cjj-j-06-0-UI /FEA=EST /CNT=6 /TID=Rn.48053.1 /TIER=ConsEnd /STK=5 /UG=Rn.48053 /UG_TITLE=ESTs BM387711 1376110_at AI009623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009623 /DB_XREF=gi:3223455 /DB_XREF=EST204074 /CLONE=RLUBG45 /FEA=EST /CNT=6 /TID=Rn.13924.1 /TIER=ConsEnd /STK=5 /UG=Rn.13924 /UG_TITLE=ESTs AI009623 ribonuclease P 25 subunit (human) Rpp25 315705 NM_001012124 0008033 // tRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004526 // ribonuclease P activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1376111_at BG371699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371699 /DB_XREF=gi:13268236 /DB_XREF=UI-R-CV0-brh-b-08-0-UI.s1 /CLONE=UI-R-CV0-brh-b-08-0-UI /FEA=EST /CNT=6 /TID=Rn.45021.1 /TIER=ConsEnd /STK=5 /UG=Rn.45021 /UG_TITLE=ESTs BG371699 1376112_a_at AI231712 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231712 /DB_XREF=gi:3815592 /DB_XREF=EST228400 /CLONE=REMDN87 /FEA=EST /CNT=1 /TID=Rn.24596.2 /TIER=ConsEnd /STK=1 /UG=Rn.24596 /UG_TITLE=ESTs AI231712 nuclear transport factor 2 Nutf2 291981 NM_001007629 0006606 // protein import into nucleus // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // not recorded 1376113_at BI279683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279683 /DB_XREF=gi:14927729 /DB_XREF=UI-R-DE0-caf-d-12-0-UI.s1 /CLONE=UI-R-DE0-caf-d-12-0-UI /FEA=EST /CNT=6 /TID=Rn.27453.1 /TIER=ConsEnd /STK=5 /UG=Rn.27453 /UG_TITLE=ESTs BI279683 rCG32422-like LOC100365308 100365308 XM_002726298 1376114_at AI234817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234817 /DB_XREF=gi:3828323 /DB_XREF=EST231379 /CLONE=ROVCI13 /FEA=EST /CNT=6 /TID=Rn.25543.1 /TIER=ConsEnd /STK=5 /UG=Rn.25543 /UG_TITLE=ESTs AI234817 potassium voltage-gated channel, subfamily G, member 2 Kcng2 307234 NM_001107372 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1376115_at AA964244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964244 /DB_XREF=gi:4279120 /DB_XREF=UI-R-E1-gl-c-11-0-UI.s1 /CLONE=UI-R-E1-gl-c-11-0-UI /FEA=EST /CNT=6 /TID=Rn.11750.1 /TIER=ConsEnd /STK=5 /UG=Rn.11750 /UG_TITLE=ESTs AA964244 1376116_at BM389678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389678 /DB_XREF=gi:18189731 /DB_XREF=UI-R-CN1-cjp-a-06-0-UI.s1 /CLONE=UI-R-CN1-cjp-a-06-0-UI /FEA=EST /CNT=6 /TID=Rn.34488.1 /TIER=ConsEnd /STK=5 /UG=Rn.34488 /UG_TITLE=ESTs BM389678 DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 Ddx24 373065 NM_199119 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1376117_at BI289103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289103 /DB_XREF=gi:14946328 /DB_XREF=UI-R-DK0-cfe-e-08-0-UI.s1 /CLONE=UI-R-DK0-cfe-e-08-0-UI /FEA=EST /CNT=6 /TID=Rn.27480.1 /TIER=ConsEnd /STK=5 /UG=Rn.27480 /UG_TITLE=ESTs, Weakly similar to F35C8.7.p (Caenorhabditis elegans) (C.elegans) BI289103 solute carrier family 44, member 4 Slc44a4 294255 NM_212541 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1376118_at BE109604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109604 /DB_XREF=gi:8501709 /DB_XREF=UI-R-BJ1-avq-a-10-0-UI.s1 /CLONE=UI-R-BJ1-avq-a-10-0-UI /FEA=EST /CNT=6 /TID=Rn.18862.1 /TIER=ConsEnd /STK=5 /UG=Rn.18862 /UG_TITLE=ESTs BE109604 OTU domain, ubiquitin aldehyde binding 2 Otub2 314405 NM_001108053 0006519 // cellular amino acid and derivative metabolic process // not recorded /// 0016579 // protein deubiquitination // not recorded /// 0019538 // protein metabolic process // inferred from electronic annotation /// 0070536 // protein K63-linked deubiquitination // not recorded /// 0071108 // protein K48-linked deubiquitination // not recorded 0004843 // ubiquitin-specific protease activity // not recorded /// 0005515 // protein binding // not recorded /// 0008242 // omega peptidase activity // inferred from electronic annotation 1376119_at BE100155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100155 /DB_XREF=gi:8492043 /DB_XREF=UI-R-BJ1-ats-d-01-0-UI.s1 /CLONE=UI-R-BJ1-ats-d-01-0-UI /FEA=EST /CNT=6 /TID=Rn.23609.1 /TIER=ConsEnd /STK=5 /UG=Rn.23609 /UG_TITLE=ESTs BE100155 thyroid adenoma associated Thada 313865 NM_001191769 /// XM_001060686 /// XM_233829 0005488 // binding // inferred from electronic annotation 1376120_at BG671875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671875 /DB_XREF=gi:13893974 /DB_XREF=DRNBZA09 /CLONE=DRNBZA09 /FEA=EST /CNT=6 /TID=Rn.9399.1 /TIER=ConsEnd /STK=5 /UG=Rn.9399 /UG_TITLE=ESTs BG671875 family with sequence similarity 69, member B Fam69b 362090 NM_001014178 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1376121_at BE107051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107051 /DB_XREF=gi:8499156 /DB_XREF=UI-R-BS1-ayp-c-04-0-UI.s1 /CLONE=UI-R-BS1-ayp-c-04-0-UI /FEA=EST /CNT=6 /TID=Rn.24754.1 /TIER=ConsEnd /STK=5 /UG=Rn.24754 /UG_TITLE=ESTs BE107051 1376122_at BF401577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401577 /DB_XREF=gi:11389552 /DB_XREF=UI-R-CA0-bgm-c-06-0-UI.s1 /CLONE=UI-R-CA0-bgm-c-06-0-UI /FEA=EST /CNT=6 /TID=Rn.57639.1 /TIER=ConsEnd /STK=5 /UG=Rn.57639 /UG_TITLE=ESTs BF401577 1376123_at BM384190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384190 /DB_XREF=gi:18184243 /DB_XREF=UI-R-DZ0-cks-j-16-0-UI.s1 /CLONE=UI-R-DZ0-cks-j-16-0-UI /FEA=EST /CNT=6 /TID=Rn.64475.1 /TIER=ConsEnd /STK=5 /UG=Rn.64475 /UG_TITLE=ESTs BM384190 ADP-ribosylation factor GTPase activating protein 1 Arfgap1 246310 NM_145090 0006810 // transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation /// 0048205 // COPI coating of Golgi vesicle // not recorded 0000139 // Golgi membrane // inferred from direct assay /// 0000139 // Golgi membrane // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation 0005096 // GTPase activator activity // traceable author statement /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376124_at BG375480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375480 /DB_XREF=gi:13299952 /DB_XREF=UI-R-CV1-btb-g-12-0-UI.s1 /CLONE=UI-R-CV1-btb-g-12-0-UI /FEA=EST /CNT=6 /TID=Rn.11866.1 /TIER=ConsEnd /STK=5 /UG=Rn.11866 /UG_TITLE=ESTs BG375480 IQ motif and ubiquitin domain containing Iqub 296936 NM_001034130 1376125_at BI289112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289112 /DB_XREF=gi:14946347 /DB_XREF=UI-R-DK0-cfe-f-05-0-UI.s1 /CLONE=UI-R-DK0-cfe-f-05-0-UI /FEA=EST /CNT=6 /TID=Rn.34270.1 /TIER=ConsEnd /STK=5 /UG=Rn.34270 /UG_TITLE=ESTs BI289112 1376126_at BE107449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107449 /DB_XREF=gi:8499554 /DB_XREF=UI-R-BS1-ayt-g-10-0-UI.s1 /CLONE=UI-R-BS1-ayt-g-10-0-UI /FEA=EST /CNT=6 /TID=Rn.51181.1 /TIER=ConsEnd /STK=5 /UG=Rn.51181 /UG_TITLE=ESTs BE107449 1376127_at BE117201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117201 /DB_XREF=gi:8509306 /DB_XREF=UI-R-BS1-ayh-a-05-0-UI.s1 /CLONE=UI-R-BS1-ayh-a-05-0-UI /FEA=EST /CNT=6 /TID=Rn.3037.1 /TIER=ConsEnd /STK=5 /UG=Rn.3037 /UG_TITLE=ESTs BE117201 1376128_at AI103937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103937 /DB_XREF=gi:3704874 /DB_XREF=EST213226 /CLONE=RHEBV35 /FEA=EST /CNT=6 /TID=Rn.17851.1 /TIER=ConsEnd /STK=5 /UG=Rn.17851 /UG_TITLE=ESTs AI103937 1376129_at BE108174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108174 /DB_XREF=gi:8500319 /DB_XREF=UI-R-BS1-ayw-g-02-0-UI.s1 /CLONE=UI-R-BS1-ayw-g-02-0-UI /FEA=EST /CNT=6 /TID=Rn.21609.1 /TIER=ConsEnd /STK=5 /UG=Rn.21609 /UG_TITLE=ESTs BE108174 1376130_a_at BM390663 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390663 /DB_XREF=gi:18190716 /DB_XREF=UI-R-CN1-cjr-i-20-0-UI.s1 /CLONE=UI-R-CN1-cjr-i-20-0-UI /FEA=EST /CNT=6 /TID=Rn.44891.1 /TIER=ConsEnd /STK=5 /UG=Rn.44891 /UG_TITLE=ESTs BM390663 dystrobrevin, beta Dtnb 362715 NM_001012191 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0045202 // synapse // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376131_a_at AW535500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535500 /DB_XREF=gi:7177914 /DB_XREF=UI-R-BS0-aof-h-07-0-UI.s1 /CLONE=UI-R-BS0-aof-h-07-0-UI /FEA=EST /CNT=6 /TID=Rn.11628.1 /TIER=ConsEnd /STK=5 /UG=Rn.11628 /UG_TITLE=ESTs, Weakly similar to DIA1 MOUSE DIAPHANOUS PROTEIN HOMOLOG 1 (M.musculus) AW535500 proline, glutamic acid and leucine rich protein 1 Pelp1 360552 NM_001024270 0006350 // transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0071339 // MLL1 complex // not recorded /// 0071339 // MLL1 complex // inferred from sequence or structural similarity 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376132_at BI289512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289512 /DB_XREF=gi:14947161 /DB_XREF=UI-R-DK0-cfh-h-11-0-UI.s1 /CLONE=UI-R-DK0-cfh-h-11-0-UI /FEA=EST /CNT=6 /TID=Rn.18877.1 /TIER=ConsEnd /STK=5 /UG=Rn.18877 /UG_TITLE=ESTs BI289512 glycosyltransferase-like domain containing 1 Gtdc1 362129 NM_001024274 0009058 // biosynthetic process // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1376133_at BF413334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413334 /DB_XREF=gi:11401323 /DB_XREF=UI-R-BT1-bnw-g-06-0-UI.s1 /CLONE=UI-R-BT1-bnw-g-06-0-UI /FEA=EST /CNT=6 /TID=Rn.41600.1 /TIER=ConsEnd /STK=5 /UG=Rn.41600 /UG_TITLE=ESTs BF413334 magnesium-dependent phosphatase 1 Mdp1 290230 NM_001106039 0030389 // fructosamine metabolic process // inferred from direct assay 0016791 // phosphatase activity // inferred from direct assay 1376134_at BI277596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277596 /DB_XREF=gi:14923622 /DB_XREF=UI-R-CY0-bxt-b-05-0-UI.s1 /CLONE=UI-R-CY0-bxt-b-05-0-UI /FEA=EST /CNT=6 /TID=Rn.16390.1 /TIER=ConsEnd /STK=5 /UG=Rn.16390 /UG_TITLE=ESTs, Weakly similar to TRANSLATION INITIATION FACTOR EIF-2B ALPHA SUBUNIT (R.norvegicus) BI277596 methylthioribose-1-phosphate isomerase homolog (S. cerevisiae) Mri1 288912 NM_001010947 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009086 // methionine biosynthetic process // inferred from electronic annotation /// 0044237 // cellular metabolic process // inferred from electronic annotation /// 0044249 // cellular biosynthetic process // inferred from electronic annotation 0016853 // isomerase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046523 // S-methyl-5-thioribose-1-phosphate isomerase activity // inferred from electronic annotation 1376135_at BI294730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294730 /DB_XREF=gi:14957470 /DB_XREF=UI-R-DK0-ceb-d-08-0-UI.s1 /CLONE=UI-R-DK0-ceb-d-08-0-UI /FEA=EST /CNT=6 /TID=Rn.23107.1 /TIER=ConsEnd /STK=5 /UG=Rn.23107 /UG_TITLE=ESTs, Weakly similar to SYD RAT ASPARTYL-TRNA SYNTHETASE (R.norvegicus) BI294730 aspartyl-tRNA synthetase 2 (mitochondrial) Dars2 304919 NM_001034143 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006422 // aspartyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004815 // aspartate-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1376136_at BI296118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296118 /DB_XREF=gi:14960239 /DB_XREF=UI-R-DK0-cew-e-09-0-UI.s1 /CLONE=UI-R-DK0-cew-e-09-0-UI /FEA=EST /CNT=6 /TID=Rn.12579.1 /TIER=ConsEnd /STK=5 /UG=Rn.12579 /UG_TITLE=ESTs BI296118 1376137_at AW254369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254369 /DB_XREF=gi:6597960 /DB_XREF=UI-R-BJ0-aei-a-12-0-UI.s1 /CLONE=UI-R-BJ0-aei-a-12-0-UI /FEA=EST /CNT=6 /TID=Rn.44709.1 /TIER=ConsEnd /STK=5 /UG=Rn.44709 /UG_TITLE=ESTs AW254369 pleckstrin homology domain containing, family B (evectins) member 2 Plekhb2 301337 NM_001106899 0005515 // protein binding // not recorded 1376138_at BI289557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289557 /DB_XREF=gi:14947250 /DB_XREF=UI-R-DK0-cff-d-12-0-UI.s1 /CLONE=UI-R-DK0-cff-d-12-0-UI /FEA=EST /CNT=6 /TID=Rn.48955.1 /TIER=ConsEnd /STK=5 /UG=Rn.48955 /UG_TITLE=ESTs BI289557 1376139_at BI295513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295513 /DB_XREF=gi:14959026 /DB_XREF=UI-R-DK0-cev-c-03-0-UI.s1 /CLONE=UI-R-DK0-cev-c-03-0-UI /FEA=EST /CNT=6 /TID=Rn.19067.1 /TIER=ConsEnd /STK=5 /UG=Rn.19067 /UG_TITLE=ESTs BI295513 plexin A3 Plxna3 309280 NM_001107581 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0021766 // hippocampus development // not recorded /// 0021860 // pyramidal neuron development // not recorded /// 0048843 // negative regulation of axon extension involved in axon guidance // not recorded /// 0050919 // negative chemotaxis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1376140_at BM389221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389221 /DB_XREF=gi:18189274 /DB_XREF=UI-R-DZ0-cko-i-02-0-UI.s1 /CLONE=UI-R-DZ0-cko-i-02-0-UI /FEA=EST /CNT=6 /TID=Rn.23987.1 /TIER=ConsEnd /STK=5 /UG=Rn.23987 /UG_TITLE=ESTs BM389221 ATP-binding cassette, sub-family D (ALD), member 1 Abcd1 363516 NM_001108821 0006810 // transport // inferred from electronic annotation /// 0033540 // fatty acid beta-oxidation using acyl-CoA oxidase // not recorded 0005739 // mitochondrion // not recorded /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005325 // peroxisomal fatty acyl CoA transporter activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1376141_at BF394672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394672 /DB_XREF=gi:11379629 /DB_XREF=UI-R-CA0-bfy-e-03-0-UI.s1 /CLONE=UI-R-CA0-bfy-e-03-0-UI /FEA=EST /CNT=6 /TID=Rn.52306.1 /TIER=ConsEnd /STK=5 /UG=Rn.52306 /UG_TITLE=ESTs BF394672 1376142_at BE120410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120410 /DB_XREF=gi:8512515 /DB_XREF=UI-R-CA0-bam-b-03-0-UI.s1 /CLONE=UI-R-CA0-bam-b-03-0-UI /FEA=EST /CNT=6 /TID=Rn.53556.1 /TIER=ConsEnd /STK=5 /UG=Rn.53556 /UG_TITLE=ESTs, Weakly similar to C33D12.2.p (Caenorhabditis elegans) (C.elegans) BE120410 Cyclin M1 Cnnm1 309387 NM_001107593 1376143_at BG380619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380619 /DB_XREF=gi:13305091 /DB_XREF=UI-R-CT0-btz-d-10-0-UI.s1 /CLONE=UI-R-CT0-btz-d-10-0-UI /FEA=EST /CNT=6 /TID=Rn.41869.1 /TIER=ConsEnd /STK=5 /UG=Rn.41869 /UG_TITLE=ESTs BG380619 1376144_at AA819679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819679 /DB_XREF=gi:4228751 /DB_XREF=UI-R-A0-bh-b-12-0-UI.s1 /CLONE=UI-R-A0-bh-b-12-0-UI /FEA=EST /CNT=6 /TID=Rn.2158.1 /TIER=ConsEnd /STK=5 /UG=Rn.2158 /UG_TITLE=ESTs AA819679 poly (ADP-ribose) polymerase family, member 9 Parp9 303905 NM_001103351 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376145_at BI276069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276069 /DB_XREF=gi:14920625 /DB_XREF=UI-R-CW0-bwn-g-02-0-UI.s1 /CLONE=UI-R-CW0-bwn-g-02-0-UI /FEA=EST /CNT=6 /TID=Rn.48964.1 /TIER=ConsEnd /STK=5 /UG=Rn.48964 /UG_TITLE=ESTs BI276069 eukaryotic translation initiation factor 2B, subunit 5 epsilon Eif2b5 192234 NM_138866 0001541 // ovarian follicle development // not recorded /// 0001541 // ovarian follicle development // inferred from sequence or structural similarity /// 0001541 // ovarian follicle development // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // not recorded /// 0006413 // translational initiation // inferred from sequence or structural similarity /// 0006413 // translational initiation // traceable author statement /// 0006413 // translational initiation // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from mutant phenotype /// 0006950 // response to stress // not recorded /// 0006950 // response to stress // inferred from sequence or structural similarity /// 0006950 // response to stress // inferred from electronic annotation /// 0009408 // response to heat // inferred from direct assay /// 0009408 // response to heat // not recorded /// 0009408 // response to heat // inferred from sequence or structural similarity /// 0009749 // response to glucose stimulus // inferred from direct assay /// 0014002 // astrocyte development // not recorded /// 0014002 // astrocyte development // inferred from sequence or structural similarity /// 0014002 // astrocyte development // inferred from electronic annotation /// 0014003 // oligodendrocyte development // not recorded /// 0014003 // oligodendrocyte development // inferred from sequence or structural similarity /// 0014003 // oligodendrocyte development // inferred from electronic annotation /// 0016070 // RNA metabolic process // inferred from electronic annotation /// 0032057 // negative regulation of translational initiation in response to stress // inferred from mutant phenotype /// 0042552 // myelination // not recorded /// 0042552 // myelination // inferred from sequence or structural similarity /// 0042552 // myelination // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0045948 // positive regulation of translational initiation // inferred from sequence or structural similarity /// 0048708 // astrocyte differentiation // not recorded /// 0048708 // astrocyte differentiation // inferred from sequence or structural similarity /// 0048708 // astrocyte differentiation // inferred from electronic annotation /// 0051716 // cellular response to stimulus // not recorded /// 0051716 // cellular response to stimulus // inferred from sequence or structural similarity /// 0051716 // cellular response to stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from direct assay /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from physical interaction /// 0005851 // eukaryotic translation initiation factor 2B complex // not recorded /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from sequence or structural similarity /// 0005851 // eukaryotic translation initiation factor 2B complex // traceable author statement /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from electronic annotation 0003743 // translation initiation factor activity // not recorded /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // translation initiation factor activity // traceable author statement /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from mutant phenotype /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0031369 // translation initiation factor binding // inferred from direct assay /// 0031369 // translation initiation factor binding // inferred from mutant phenotype 1376146_at BI282272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282272 /DB_XREF=gi:14932875 /DB_XREF=UI-R-CU0s-cby-f-04-0-UI.s1 /CLONE=UI-R-CU0s-cby-f-04-0-UI /FEA=EST /CNT=6 /TID=Rn.41021.1 /TIER=ConsEnd /STK=5 /UG=Rn.41021 /UG_TITLE=ESTs BI282272 similar to RIKEN cDNA 2310033P09 RGD1304587 303180 NM_001100551 1376147_at BI284316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284316 /DB_XREF=gi:14936882 /DB_XREF=UI-R-CX0s-ccq-g-01-0-UI.s1 /CLONE=UI-R-CX0s-ccq-g-01-0-UI /FEA=EST /CNT=6 /TID=Rn.15773.1 /TIER=ConsEnd /STK=5 /UG=Rn.15773 /UG_TITLE=ESTs BI284316 1376148_at AW535240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535240 /DB_XREF=gi:7177615 /DB_XREF=UI-R-C4-alu-d-05-0-UI.s1 /CLONE=UI-R-C4-alu-d-05-0-UI /FEA=EST /CNT=6 /TID=Rn.23992.1 /TIER=ConsEnd /STK=5 /UG=Rn.23992 /UG_TITLE=ESTs AW535240 1376149_at BE100200 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100200 /DB_XREF=gi:8492088 /DB_XREF=UI-R-BJ1-ats-h-02-0-UI.s1 /CLONE=UI-R-BJ1-ats-h-02-0-UI /FEA=EST /CNT=6 /TID=Rn.17059.1 /TIER=ConsEnd /STK=5 /UG=Rn.17059 /UG_TITLE=ESTs BE100200 1376150_at BI282755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282755 /DB_XREF=gi:14933838 /DB_XREF=UI-R-CW0s-cce-g-11-0-UI.s1 /CLONE=UI-R-CW0s-cce-g-11-0-UI /FEA=EST /CNT=6 /TID=Rn.23918.1 /TIER=ConsEnd /STK=5 /UG=Rn.23918 /UG_TITLE=ESTs BI282755 sphingosine-1-phosphate receptor 3 S1pr3 306792 XM_002725237 /// XM_225216 0001816 // cytokine production // inferred from electronic annotation /// 0001816 // cytokine production // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0032651 // regulation of interleukin-1 beta production // inferred from electronic annotation /// 0032651 // regulation of interleukin-1 beta production // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0001619 // lysosphingolipid and lysophosphatidic acid receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1376151_a_at AI407953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407953 /DB_XREF=gi:4251457 /DB_XREF=EST236243 /CLONE=RPLDJ51 /FEA=EST /CNT=6 /TID=Rn.8128.1 /TIER=ConsEnd /STK=5 /UG=Rn.8128 /UG_TITLE=ESTs AI407953 rCG32755-like LOC100365106 100365106 XM_002724498 0016020 // membrane // inferred from electronic annotation 0005525 // GTP binding // inferred from electronic annotation /// 0016817 // hydrolase activity, acting on acid anhydrides // inferred from electronic annotation 1376152_at AA819316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819316 /DB_XREF=gi:4228454 /DB_XREF=UI-R-A0-bc-b-01-0-UI.s1 /CLONE=UI-R-A0-bc-b-01-0-UI /FEA=EST /CNT=6 /TID=Rn.24515.1 /TIER=ConsEnd /STK=5 /UG=Rn.24515 /UG_TITLE=ESTs AA819316 1376153_at BE102621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102621 /DB_XREF=gi:8494720 /DB_XREF=UI-R-BT1-aqs-b-05-0-UI.s1 /CLONE=UI-R-BT1-aqs-b-05-0-UI /FEA=EST /CNT=6 /TID=Rn.22233.1 /TIER=ConsEnd /STK=5 /UG=Rn.22233 /UG_TITLE=ESTs BE102621 1376154_at AI236861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236861 /DB_XREF=gi:3830367 /DB_XREF=EST233423 /CLONE=ROVDL46 /FEA=EST /CNT=6 /TID=Rn.25398.1 /TIER=ConsEnd /STK=5 /UG=Rn.25398 /UG_TITLE=ESTs AI236861 1376155_at BE113295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113295 /DB_XREF=gi:8505440 /DB_XREF=UI-R-BJ1-awe-b-10-0-UI.s1 /CLONE=UI-R-BJ1-awe-b-10-0-UI /FEA=EST /CNT=6 /TID=Rn.14938.1 /TIER=ConsEnd /STK=5 /UG=Rn.14938 /UG_TITLE=ESTs, Weakly similar to T26061 hypothetical protein W01F3.1a - Caenorhabditis elegans (C.elegans) BE113295 family with sequence similarity 151, member B Fam151b 499507 NM_001134748 1376156_at BM391273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391273 /DB_XREF=gi:18191326 /DB_XREF=UI-R-DY0-ckq-b-05-0-UI.s1 /CLONE=UI-R-DY0-ckq-b-05-0-UI /FEA=EST /CNT=6 /TID=Rn.6350.1 /TIER=ConsEnd /STK=5 /UG=Rn.6350 /UG_TITLE=ESTs BM391273 hypothetical LOC316091 RGD1304827 316091 NM_001009437 0005576 // extracellular region // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1376157_at AI236782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236782 /DB_XREF=gi:4136244 /DB_XREF=EST233344 /CLONE=ROVDK45 /FEA=EST /CNT=6 /TID=Rn.21114.1 /TIER=ConsEnd /STK=5 /UG=Rn.21114 /UG_TITLE=ESTs AI236782 Ubiquitin-like modifier activating enzyme 6 Uba6 305268 NM_001107213 0006464 // protein modification process // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded 0005737 // cytoplasm // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008641 // small protein activating enzyme activity // inferred from electronic annotation /// 0019780 // FAT10 activating enzyme activity // not recorded 1376158_at BG373073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373073 /DB_XREF=gi:13269610 /DB_XREF=UI-R-CV1-bsf-b-10-0-UI.s1 /CLONE=UI-R-CV1-bsf-b-10-0-UI /FEA=EST /CNT=6 /TID=Rn.28740.1 /TIER=ConsEnd /STK=5 /UG=Rn.28740 /UG_TITLE=ESTs BG373073 1376159_at AI177089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177089 /DB_XREF=gi:3727727 /DB_XREF=EST220696 /CLONE=ROVCA63 /FEA=EST /CNT=6 /TID=Rn.40179.1 /TIER=ConsEnd /STK=5 /UG=Rn.40179 /UG_TITLE=ESTs AI177089 GDNF-inducible zinc finger protein 1 Gzf1 311508 NM_001107788 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376160_at BF408850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408850 /DB_XREF=gi:11396825 /DB_XREF=UI-R-BS2-bet-b-06-0-UI.s1 /CLONE=UI-R-BS2-bet-b-06-0-UI /FEA=EST /CNT=6 /TID=Rn.40873.1 /TIER=ConsEnd /STK=5 /UG=Rn.40873 /UG_TITLE=ESTs, Highly similar to TRANSCRIPTION FACTOR RELB (M.musculus) BF408850 rCG53773-like LOC100363783 100363783 XM_002725589 1376161_at AI235294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235294 /DB_XREF=gi:3828800 /DB_XREF=EST231856 /CLONE=ROVCP90 /FEA=EST /CNT=6 /TID=Rn.24813.1 /TIER=ConsEnd /STK=5 /UG=Rn.24813 /UG_TITLE=ESTs AI235294 transmembrane emp24 protein transport domain containing 4 Tmed4 305502 NM_001107238 0006810 // transport // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded 1376162_at BE115058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115058 /DB_XREF=gi:8507163 /DB_XREF=UI-R-BJ1-awu-g-05-0-UI.s1 /CLONE=UI-R-BJ1-awu-g-05-0-UI /FEA=EST /CNT=6 /TID=Rn.53850.1 /TIER=ConsEnd /STK=5 /UG=Rn.53850 /UG_TITLE=ESTs BE115058 1376163_at AI501286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501286 /DB_XREF=gi:4399137 /DB_XREF=UI-R-C2p-ru-b-01-0-UI.s1 /CLONE=UI-R-C2p-ru-b-01-0-UI /FEA=EST /CNT=6 /TID=Rn.14775.1 /TIER=ConsEnd /STK=5 /UG=Rn.14775 /UG_TITLE=ESTs AI501286 clarin 3 Clrn3 309082 NM_001014026 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1376164_at BM383641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383641 /DB_XREF=gi:18183694 /DB_XREF=UI-R-DM1-cka-j-10-0-UI.s1 /CLONE=UI-R-DM1-cka-j-10-0-UI /FEA=EST /CNT=6 /TID=Rn.40655.1 /TIER=ConsEnd /STK=5 /UG=Rn.40655 /UG_TITLE=ESTs, Highly similar to T02299 hypothetical protein F23858_1 (H.sapiens) BM383641 splicing factor 4 Sf4 290666 NM_001011920 0006396 // RNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1376165_at BE098153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098153 /DB_XREF=gi:8490057 /DB_XREF=UI-R-BJ1-ata-h-08-0-UI.s1 /CLONE=UI-R-BJ1-ata-h-08-0-UI /FEA=EST /CNT=6 /TID=Rn.45360.1 /TIER=ConsEnd /STK=5 /UG=Rn.45360 /UG_TITLE=ESTs BE098153 solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 Slc24a3 85267 NM_053505 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from direct assay /// 0006812 // cation transport // not recorded /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from expression pattern /// 0006874 // cellular calcium ion homeostasis // non-traceable author statement /// 0034220 // ion transmembrane transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008273 // calcium, potassium:sodium antiporter activity // inferred from direct assay /// 0008273 // calcium, potassium:sodium antiporter activity // not recorded /// 0008273 // calcium, potassium:sodium antiporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation 1376166_at AW528438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528438 /DB_XREF=gi:7170852 /DB_XREF=UI-R-BO1-ajl-d-07-0-UI.s1 /CLONE=UI-R-BO1-ajl-d-07-0-UI /FEA=EST /CNT=6 /TID=Rn.46881.1 /TIER=ConsEnd /STK=5 /UG=Rn.46881 /UG_TITLE=ESTs AW528438 LOC361192 RGD1308544 361192 XM_001063171 /// XM_341475 1376167_at AA799347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799347 /DB_XREF=gi:2862302 /DB_XREF=EST188844 /CLONE=RHEAA46 /FEA=EST /CNT=6 /TID=Rn.4292.1 /TIER=ConsEnd /STK=5 /UG=Rn.4292 /UG_TITLE=ESTs AA799347 1376168_at BE100946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100946 /DB_XREF=gi:8492848 /DB_XREF=UI-R-BJ1-aug-d-02-0-UI.s1 /CLONE=UI-R-BJ1-aug-d-02-0-UI /FEA=EST /CNT=6 /TID=Rn.13841.1 /TIER=ConsEnd /STK=5 /UG=Rn.13841 /UG_TITLE=ESTs BE100946 membrane magnesium transporter 1 Mmgt1 302864 NM_001106970 0006810 // transport // inferred from electronic annotation /// 0006824 // cobalt ion transport // not recorded /// 0006824 // cobalt ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // not recorded /// 0015674 // di-, tri-valent inorganic cation transport // not recorded /// 0015674 // di-, tri-valent inorganic cation transport // inferred from electronic annotation /// 0015684 // ferrous iron transport // not recorded /// 0015684 // ferrous iron transport // inferred from electronic annotation /// 0015693 // magnesium ion transport // not recorded /// 0015693 // magnesium ion transport // inferred from sequence or structural similarity /// 0015693 // magnesium ion transport // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0034755 // iron ion transmembrane transport // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from sequence or structural similarity /// 0005769 // early endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation 0015082 // di-, tri-valent inorganic cation transmembrane transporter activity // not recorded /// 0015082 // di-, tri-valent inorganic cation transmembrane transporter activity // inferred from electronic annotation /// 0015087 // cobalt ion transmembrane transporter activity // inferred from electronic annotation /// 0015087 // cobalt ion transmembrane transporter activity // not recorded /// 0015093 // ferrous iron transmembrane transporter activity // inferred from electronic annotation /// 0015093 // ferrous iron transmembrane transporter activity // not recorded /// 0015095 // magnesium ion transmembrane transporter activity // not recorded /// 0015095 // magnesium ion transmembrane transporter activity // inferred from sequence or structural similarity /// 0015095 // magnesium ion transmembrane transporter activity // inferred from electronic annotation 1376169_at BE104290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104290 /DB_XREF=gi:8496390 /DB_XREF=UI-R-BX0-arn-a-10-0-UI.s1 /CLONE=UI-R-BX0-arn-a-10-0-UI /FEA=EST /CNT=6 /TID=Rn.23859.1 /TIER=ConsEnd /STK=5 /UG=Rn.23859 /UG_TITLE=ESTs BE104290 1376170_at BI290821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290821 /DB_XREF=gi:14949760 /DB_XREF=UI-R-DK0-cga-g-09-0-UI.s1 /CLONE=UI-R-DK0-cga-g-09-0-UI /FEA=EST /CNT=6 /TID=Rn.12885.1 /TIER=ConsEnd /STK=5 /UG=Rn.12885 /UG_TITLE=ESTs, Weakly similar to FINC RAT FIBRONECTIN PRECURSOR (R.norvegicus) BI290821 collagen, type XIV, alpha 1 Col14a1 314981 NM_001130548 0007155 // cell adhesion // inferred from electronic annotation 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0005198 // structural molecule activity // inferred from electronic annotation 1376171_at AA851303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851303 /DB_XREF=gi:2938843 /DB_XREF=EST194071 /CLONE=RPLAF02 /FEA=EST /CNT=6 /TID=Rn.2492.1 /TIER=ConsEnd /STK=5 /UG=Rn.2492 /UG_TITLE=ESTs AA851303 ubiquitin specific peptidase 11 Usp11 408217 NM_001008861 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0016579 // protein deubiquitination // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement 0004197 // cysteine-type endopeptidase activity // traceable author statement /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1376172_at BM390362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390362 /DB_XREF=gi:18190420 /DB_XREF=UI-R-CN1-cjq-d-15-0-UI.s1 /CLONE=UI-R-CN1-cjq-d-15-0-UI /FEA=EST /CNT=6 /TID=Rn.29008.1 /TIER=ConsEnd /STK=5 /UG=Rn.29008 /UG_TITLE=ESTs BM390362 ATP-binding cassette, sub-family G (WHITE), member 4 Abcg4 300664 NM_001106816 0010875 // positive regulation of cholesterol efflux // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045542 // positive regulation of cholesterol biosynthetic process // not recorded /// 0055099 // response to high density lipoprotein stimulus // not recorded 0005768 // endosome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1376173_at BI292125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292125 /DB_XREF=gi:14952323 /DB_XREF=UI-R-DN0-ciu-j-18-0-UI.s1 /CLONE=UI-R-DN0-ciu-j-18-0-UI /FEA=EST /CNT=6 /TID=Rn.7124.1 /TIER=ConsEnd /STK=5 /UG=Rn.7124 /UG_TITLE=ESTs BI292125 1376174_at AI137506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137506 /DB_XREF=gi:3638283 /DB_XREF=UI-R-C2p-oc-b-09-0-UI.s1 /CLONE=UI-R-C2p-oc-b-09-0-UI /FEA=EST /CNT=6 /TID=Rn.7875.1 /TIER=ConsEnd /STK=5 /UG=Rn.7875 /UG_TITLE=ESTs, Weakly similar to A29035 thyroid hormone-regulated proteinase inhibitor - rat (R.norvegicus) AI137506 serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11 Serpina11 362774 NM_001008776 /// NM_001166352 0005576 // extracellular region // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1376175_at BF283433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283433 /DB_XREF=gi:11214503 /DB_XREF=EST448024 /CLONE=RGIEB95 /FEA=EST /CNT=6 /TID=Rn.24959.1 /TIER=ConsEnd /STK=5 /UG=Rn.24959 /UG_TITLE=ESTs BF283433 glioblastoma amplified sequence Gbas 498174 NM_001017486 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1376176_at AI145586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145586 /DB_XREF=gi:3667385 /DB_XREF=UI-R-BT0-qi-h-05-0-UI.s1 /CLONE=UI-R-BT0-qi-h-05-0-UI /FEA=EST /CNT=6 /TID=Rn.6457.1 /TIER=ConsEnd /STK=5 /UG=Rn.6457 /UG_TITLE=ESTs AI145586 microtubule associated serine/threonine kinase 3 Mast3 688540 NM_001134796 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1376177_at AI179609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179609 /DB_XREF=gi:3730247 /DB_XREF=EST223332 /CLONE=RSPCJ55 /FEA=EST /CNT=6 /TID=Rn.6922.1 /TIER=ConsEnd /STK=5 /UG=Rn.6922 /UG_TITLE=ESTs AI179609 family with sequence similarity 117, member A Fam117a 497983 NM_001109039 1376178_at BF403703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403703 /DB_XREF=gi:11391678 /DB_XREF=UI-R-CA1-bix-l-20-0-UI.s1 /CLONE=UI-R-CA1-bix-l-20-0-UI /FEA=EST /CNT=6 /TID=Rn.57737.1 /TIER=ConsEnd /STK=5 /UG=Rn.57737 /UG_TITLE=ESTs BF403703 1376179_at BM386051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386051 /DB_XREF=gi:18186104 /DB_XREF=UI-R-DN1-ckf-l-20-0-UI.s1 /CLONE=UI-R-DN1-ckf-l-20-0-UI /FEA=EST /CNT=6 /TID=Rn.35458.1 /TIER=ConsEnd /STK=5 /UG=Rn.35458 /UG_TITLE=ESTs BM386051 1376180_at AW915012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915012 /DB_XREF=gi:8080696 /DB_XREF=EST346316 /CLONE=RGIBN47 /FEA=EST /CNT=6 /TID=Rn.9377.1 /TIER=ConsEnd /STK=5 /UG=Rn.9377 /UG_TITLE=ESTs AW915012 1376181_at BG668724 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668724 /DB_XREF=gi:13890646 /DB_XREF=DRNBWH04 /CLONE=DRNBWH04 /FEA=EST /CNT=6 /TID=Rn.18158.1 /TIER=ConsEnd /STK=5 /UG=Rn.18158 /UG_TITLE=ESTs BG668724 nuclear receptor coactivator 5 Ncoa5 296372 NM_001106543 0006412 // translation // inferred from electronic annotation 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1376182_at BM383074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383074 /DB_XREF=gi:18183127 /DB_XREF=UI-R-DS0-cje-f-19-0-UI.s1 /CLONE=UI-R-DS0-cje-f-19-0-UI /FEA=EST /CNT=6 /TID=Rn.14924.1 /TIER=ConsEnd /STK=5 /UG=Rn.14924 /UG_TITLE=ESTs BM383074 Fetal Alzheimer antigen Falz 303617 NM_001127535 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376183_at AI101484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101484 /DB_XREF=gi:3706376 /DB_XREF=EST210773 /CLONE=RBRBP74 /FEA=EST /CNT=6 /TID=Rn.13850.1 /TIER=ConsEnd /STK=5 /UG=Rn.13850 /UG_TITLE=ESTs AI101484 1376184_at BG381127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381127 /DB_XREF=gi:13305599 /DB_XREF=UI-R-CS0-btr-e-08-0-UI.s1 /CLONE=UI-R-CS0-btr-e-08-0-UI /FEA=EST /CNT=6 /TID=Rn.41365.1 /TIER=ConsEnd /STK=5 /UG=Rn.41365 /UG_TITLE=ESTs, Weakly similar to A46528 phosphatidylinositol-anchored B-cell antigen ThB precursor - mouse (M.musculus) BG381127 Ly6/neurotoxin 1 Lynx1 300018 NM_001130546 0009405 // pathogenesis // inferred from electronic annotation /// 0010469 // regulation of receptor activity // not recorded 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // not recorded /// 0008200 // ion channel inhibitor activity // not recorded /// 0030550 // acetylcholine receptor inhibitor activity // not recorded 1376185_at AW253880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253880 /DB_XREF=gi:6597471 /DB_XREF=UI-R-BJ0-aec-e-01-0-UI.s1 /CLONE=UI-R-BJ0-aec-e-01-0-UI /FEA=EST /CNT=6 /TID=Rn.38181.1 /TIER=ConsEnd /STK=5 /UG=Rn.38181 /UG_TITLE=ESTs, Weakly similar to kinesin family member 3C (Rattus norvegicus) (R.norvegicus) AW253880 kinesin family member C1 Kifc1 294286 NM_001005878 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1376186_at BF393132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393132 /DB_XREF=gi:11377992 /DB_XREF=UI-R-CA0-bfp-b-05-0-UI.s1 /CLONE=UI-R-CA0-bfp-b-05-0-UI /FEA=EST /CNT=6 /TID=Rn.58360.1 /TIER=ConsEnd /STK=5 /UG=Rn.58360 /UG_TITLE=ESTs BF393132 1376187_at AI177887 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177887 /DB_XREF=gi:3728525 /DB_XREF=EST221537 /CLONE=RPLCH94 /FEA=EST /CNT=6 /TID=Rn.19332.1 /TIER=ConsEnd /STK=5 /UG=Rn.19332 /UG_TITLE=ESTs AI177887 Solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 Slc35d1 298280 NM_001106668 0006065 // UDP-glucuronate biosynthetic process // not recorded 0005789 // endoplasmic reticulum membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005461 // UDP-glucuronic acid transmembrane transporter activity // not recorded 1376188_at AA997156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997156 /DB_XREF=gi:4281937 /DB_XREF=UI-R-C0-hq-d-09-0-UI.s1 /CLONE=UI-R-C0-hq-d-09-0-UI /FEA=EST /CNT=6 /TID=Rn.33084.1 /TIER=ConsEnd /STK=5 /UG=Rn.33084 /UG_TITLE=ESTs AA997156 Hypothetical protein LOC691153 LOC691153 691153 NM_001109627 1376189_at AA849377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849377 /DB_XREF=gi:2936917 /DB_XREF=EST192144 /CLONE=RMUAE06 /FEA=EST /CNT=6 /TID=Rn.19963.1 /TIER=ConsEnd /STK=5 /UG=Rn.19963 /UG_TITLE=ESTs AA849377 zinc finger, MYM-type 1 Zmym1 313604 NM_001107983 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1376190_at AI103391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103391 /DB_XREF=gi:3707941 /DB_XREF=EST212680 /CLONE=REMCB42 /FEA=EST /CNT=6 /TID=Rn.65313.1 /TIER=ConsEnd /STK=5 /UG=Rn.65313 /UG_TITLE=ESTs, Highly similar to phosphatidylinositol 3-kinase, regulartory subunit, polypeptide 2 (p85 beta) (Rattus norvegicus) (R.norvegicus) AI103391 phosphoinositide-3-kinase, regulatory subunit 2 (beta) Pik3r2 29741 NM_022185 0007165 // signal transduction // inferred from electronic annotation /// 0019987 // negative regulation of anti-apoptosis // inferred from electronic annotation /// 0019987 // negative regulation of anti-apoptosis // not recorded /// 0019987 // negative regulation of anti-apoptosis // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005942 // phosphoinositide 3-kinase complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // not recorded /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from sequence or structural similarity /// 0035014 // phosphoinositide 3-kinase regulator activity // inferred from electronic annotation 1376191_at AA848820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848820 /DB_XREF=gi:2936360 /DB_XREF=EST191581 /CLONE=RLUAG79 /FEA=EST /CNT=6 /TID=Rn.6386.1 /TIER=ConsEnd /STK=5 /UG=Rn.6386 /UG_TITLE=ESTs AA848820 hydroxyprostaglandin dehydrogenase 15 (NAD) Hpgd 79242 NM_024390 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006693 // prostaglandin metabolic process // not recorded /// 0006693 // prostaglandin metabolic process // inferred from sequence or structural similarity /// 0006693 // prostaglandin metabolic process // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from sequence or structural similarity /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007565 // female pregnancy // not recorded /// 0007565 // female pregnancy // inferred from sequence or structural similarity /// 0007565 // female pregnancy // inferred from electronic annotation /// 0007567 // parturition // not recorded /// 0007567 // parturition // inferred from sequence or structural similarity /// 0007567 // parturition // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // not recorded /// 0045786 // negative regulation of cell cycle // inferred from sequence or structural similarity /// 0045786 // negative regulation of cell cycle // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003824 // catalytic activity // not recorded /// 0003824 // catalytic activity // inferred from sequence or structural similarity /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004957 // prostaglandin E receptor activity // not recorded /// 0004957 // prostaglandin E receptor activity // inferred from sequence or structural similarity /// 0004957 // prostaglandin E receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016404 // 15-hydroxyprostaglandin dehydrogenase (NAD+) activity // inferred from direct assay /// 0016404 // 15-hydroxyprostaglandin dehydrogenase (NAD+) activity // not recorded /// 0016404 // 15-hydroxyprostaglandin dehydrogenase (NAD+) activity // inferred from sequence or structural similarity /// 0016404 // 15-hydroxyprostaglandin dehydrogenase (NAD+) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0051287 // NAD or NADH binding // not recorded /// 0051287 // NAD or NADH binding // inferred from sequence or structural similarity /// 0051287 // NAD or NADH binding // inferred from electronic annotation /// 0070403 // NAD binding // not recorded /// 0070403 // NAD binding // inferred from sequence or structural similarity /// 0070403 // NAD binding // inferred from electronic annotation 1376192_at AI070138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070138 /DB_XREF=gi:3396389 /DB_XREF=UI-R-Y0-lu-f-10-0-UI.s1 /CLONE=UI-R-Y0-lu-f-10-0-UI /FEA=EST /CNT=6 /TID=Rn.19920.1 /TIER=ConsEnd /STK=5 /UG=Rn.19920 /UG_TITLE=ESTs, Moderately similar to T08699 hypothetical protein DKFZp564C103.1 (H.sapiens) AI070138 N-acetyltransferase 9 (GCN5-related, putative) Nat9 303669 NM_001134835 0008152 // metabolic process // inferred from electronic annotation 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1376193_at AA819658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819658 /DB_XREF=gi:4227995 /DB_XREF=UI-R-A0-an-h-04-0-UI.s1 /CLONE=UI-R-A0-an-h-04-0-UI /FEA=EST /CNT=6 /TID=Rn.16652.1 /TIER=ConsEnd /STK=5 /UG=Rn.16652 /UG_TITLE=ESTs AA819658 1376194_at BM384889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384889 /DB_XREF=gi:18184942 /DB_XREF=UI-R-DY0-ckl-h-24-0-UI.s1 /CLONE=UI-R-DY0-ckl-h-24-0-UI /FEA=EST /CNT=6 /TID=Rn.25063.1 /TIER=ConsEnd /STK=5 /UG=Rn.25063 /UG_TITLE=ESTs BM384889 1376195_at BI288682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288682 /DB_XREF=gi:14945506 /DB_XREF=UI-R-DK0-cdd-g-01-0-UI.s1 /CLONE=UI-R-DK0-cdd-g-01-0-UI /FEA=EST /CNT=6 /TID=Rn.12731.1 /TIER=ConsEnd /STK=5 /UG=Rn.12731 /UG_TITLE=ESTs, Highly similar to SPIN MOUSE SPINDLIN (M.musculus) BI288682 spindlin 1 Spin1 361217 NM_001024796 0007049 // cell cycle // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007276 // gamete generation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005819 // spindle // not recorded 1376196_a_at BG375059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375059 /DB_XREF=gi:13299531 /DB_XREF=UI-R-CV1-bst-f-05-0-UI.s1 /CLONE=UI-R-CV1-bst-f-05-0-UI /FEA=EST /CNT=6 /TID=Rn.6309.1 /TIER=ConsEnd /STK=5 /UG=Rn.6309 /UG_TITLE=ESTs BG375059 mediator complex subunit 4 Med4 306030 NM_001024256 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0030518 // steroid hormone receptor signaling pathway // not recorded /// 0030518 // steroid hormone receptor signaling pathway // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016592 // mediator complex // inferred from electronic annotation /// 0016592 // mediator complex // not recorded 0003712 // transcription cofactor activity // inferred from electronic annotation /// 0003712 // transcription cofactor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation /// 0016455 // RNA polymerase II transcription mediator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0046966 // thyroid hormone receptor binding // inferred from electronic annotation /// 0046966 // thyroid hormone receptor binding // not recorded 1376197_at AW251860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251860 /DB_XREF=gi:6595451 /DB_XREF=UI-R-BJ0-adl-g-11-0-UI.s1 /CLONE=UI-R-BJ0-adl-g-11-0-UI /FEA=EST /CNT=6 /TID=Rn.11848.1 /TIER=ConsEnd /STK=5 /UG=Rn.11848 /UG_TITLE=ESTs AW251860 1376198_at BI303342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303342 /DB_XREF=gi:14979622 /DB_XREF=UI-R-DR0-cjb-j-23-0-UI.s1 /CLONE=UI-R-DR0-cjb-j-23-0-UI /FEA=EST /CNT=6 /TID=Rn.41390.1 /TIER=ConsEnd /STK=5 /UG=Rn.41390 /UG_TITLE=ESTs BI303342 adipocyte-specific adhesion molecule Asam 286939 NM_173154 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 1376199_at BF419187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419187 /DB_XREF=gi:11407139 /DB_XREF=UI-R-BJ2-bqo-b-08-0-UI.s1 /CLONE=UI-R-BJ2-bqo-b-08-0-UI /FEA=EST /CNT=6 /TID=Rn.7013.1 /TIER=ConsEnd /STK=5 /UG=Rn.7013 /UG_TITLE=ESTs BF419187 cell cycle related kinase Ccrk 364666 NM_001025752 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1376200_at BM385898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385898 /DB_XREF=gi:18185951 /DB_XREF=UI-R-DM1-cke-l-22-0-UI.s1 /CLONE=UI-R-DM1-cke-l-22-0-UI /FEA=EST /CNT=6 /TID=Rn.11477.1 /TIER=ConsEnd /STK=5 /UG=Rn.11477 /UG_TITLE=ESTs BM385898 hypothetical LOC316976 MGC72974 316976 NM_198772 0006479 // protein methylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0008276 // protein methyltransferase activity // inferred from electronic annotation 1376201_at AI070397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070397 /DB_XREF=gi:3396648 /DB_XREF=UI-R-Y0-lt-g-07-0-UI.s1 /CLONE=UI-R-Y0-lt-g-07-0-UI /FEA=EST /CNT=6 /TID=Rn.20000.1 /TIER=ConsEnd /STK=5 /UG=Rn.20000 /UG_TITLE=ESTs AI070397 methyltransferase 10 domain containing Mett10d 360568 XR_085570 /// XR_085968 0008168 // methyltransferase activity // inferred from electronic annotation 1376202_at BF416236 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416236 /DB_XREF=gi:11404225 /DB_XREF=UI-R-CA0-bkr-b-03-0-UI.s1 /CLONE=UI-R-CA0-bkr-b-03-0-UI /FEA=EST /CNT=6 /TID=Rn.42044.1 /TIER=ConsEnd /STK=5 /UG=Rn.42044 /UG_TITLE=ESTs BF416236 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1 B3gnt1 293667 NM_001106324 0030311 // poly-N-acetyllactosamine biosynthetic process // not recorded 0008532 // N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1376203_at BF285996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285996 /DB_XREF=gi:11217066 /DB_XREF=EST450587 /CLONE=RGIFL52 /FEA=EST /CNT=6 /TID=Rn.45542.1 /TIER=ConsEnd /STK=5 /UG=Rn.45542 /UG_TITLE=ESTs BF285996 1376204_at AW531412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531412 /DB_XREF=gi:7173826 /DB_XREF=UI-R-BS0-amm-f-10-0-UI.s1 /CLONE=UI-R-BS0-amm-f-10-0-UI /FEA=EST /CNT=6 /TID=Rn.17180.1 /TIER=ConsEnd /STK=5 /UG=Rn.17180 /UG_TITLE=ESTs AW531412 1376205_at BI286851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286851 /DB_XREF=gi:14941895 /DB_XREF=UI-R-CT0s-cam-f-05-0-UI.s1 /CLONE=UI-R-CT0s-cam-f-05-0-UI /FEA=EST /CNT=6 /TID=Rn.50751.1 /TIER=ConsEnd /STK=5 /UG=Rn.50751 /UG_TITLE=ESTs BI286851 1376206_at BF398576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398576 /DB_XREF=gi:11383570 /DB_XREF=UI-R-BS2-beq-d-08-0-UI.s1 /CLONE=UI-R-BS2-beq-d-08-0-UI /FEA=EST /CNT=6 /TID=Rn.26710.1 /TIER=ConsEnd /STK=5 /UG=Rn.26710 /UG_TITLE=ESTs BF398576 Similar to TSG118.1 RGD1565096 499255 NM_001134611 1376207_at BE105381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105381 /DB_XREF=gi:8497483 /DB_XREF=UI-R-BO1-asn-b-03-0-UI.s1 /CLONE=UI-R-BO1-asn-b-03-0-UI /FEA=EST /CNT=6 /TID=Rn.46245.1 /TIER=ConsEnd /STK=5 /UG=Rn.46245 /UG_TITLE=ESTs, Weakly similar to ataxin 2 binding protein 1; ataxin 2-binding protein 1 (Mus musculus) (M.musculus) BE105381 Similar to ataxin 2-binding protein 1 isoform 2 RGD1560070 287847 NM_001134498 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1376208_at BF419406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419406 /DB_XREF=gi:11407395 /DB_XREF=UI-R-CA1-bnr-c-09-0-UI.s1 /CLONE=UI-R-CA1-bnr-c-09-0-UI /FEA=EST /CNT=6 /TID=Rn.26560.1 /TIER=ConsEnd /STK=5 /UG=Rn.26560 /UG_TITLE=ESTs BF419406 1376209_at BG669208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669208 /DB_XREF=gi:13891115 /DB_XREF=DRN1B07 /CLONE=DRN1B07 /FEA=EST /CNT=6 /TID=Rn.38946.1 /TIER=ConsEnd /STK=5 /UG=Rn.38946 /UG_TITLE=ESTs, Weakly similar to T21150 hypothetical protein F20D1.10 - Caenorhabditis elegans (C.elegans) BG669208 similar to CG17680-PA LOC687237 687237 XM_001077650 1376210_at AI231684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231684 /DB_XREF=gi:3815564 /DB_XREF=EST228372 /CLONE=REMDN56 /FEA=EST /CNT=6 /TID=Rn.24593.1 /TIER=ConsEnd /STK=5 /UG=Rn.24593 /UG_TITLE=ESTs, Weakly similar to TRANSCRIPTION FACTOR BF-1 (R.norvegicus) AI231684 forkhead box O3 Foxo3 294515 NM_001106395 0001542 // ovulation from ovarian follicle // not recorded /// 0001544 // initiation of primordial ovarian follicle growth // not recorded /// 0001547 // antral ovarian follicle growth // not recorded /// 0001556 // oocyte maturation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006915 // apoptosis // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0030330 // DNA damage response, signal transduction by p53 class mediator // not recorded /// 0042593 // glucose homeostasis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045648 // positive regulation of erythrocyte differentiation // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0019901 // protein kinase binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1376211_a_at AI235964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235964 /DB_XREF=gi:3829470 /DB_XREF=EST232526 /CLONE=ROVCZ63 /FEA=EST /CNT=1 /TID=Rn.8912.2 /TIER=ConsEnd /STK=1 /UG=Rn.8912 /UG_TITLE=ESTs AI235964 potassium channel tetramerisation domain containing 6 Kctd6 305792 NM_001107253 0006813 // potassium ion transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1376212_at AI102437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102437 /DB_XREF=gi:3707208 /DB_XREF=EST211726 /CLONE=RBRCD49 /FEA=EST /CNT=6 /TID=Rn.3078.1 /TIER=ConsEnd /STK=5 /UG=Rn.3078 /UG_TITLE=ESTs, Weakly similar to RP8 RAT ZINC FINGER PROTEIN RP-8 (R.norvegicus) AI102437 programmed cell death 2-like Pdcd2l 689637 NM_001109544 0001525 // angiogenesis // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // inferred from direct assay /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006096 // glycolysis // inferred from electronic annotation /// 0007611 // learning or memory // inferred from expression pattern /// 0019242 // methylglyoxal biosynthetic process // inferred from mutant phenotype /// 0043154 // negative regulation of caspase activity // inferred from mutant phenotype /// 0043524 // negative regulation of neuron apoptosis // inferred from mutant phenotype /// 0046185 // aldehyde catabolic process // inferred from mutant phenotype /// 0051156 // glucose 6-phosphate metabolic process // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0019717 // synaptosome // inferred from direct assay 0004347 // glucose-6-phosphate isomerase activity // inferred from electronic annotation /// 0004347 // glucose-6-phosphate isomerase activity // inferred from direct assay /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0016866 // intramolecular transferase activity // inferred from mutant phenotype /// 0048029 // monosaccharide binding // inferred from physical interaction 1376213_at AI007838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI007838 /DB_XREF=gi:3221670 /DB_XREF=EST202289 /CLONE=RBRAV54 /FEA=EST /CNT=6 /TID=Rn.48611.1 /TIER=ConsEnd /STK=5 /UG=Rn.48611 /UG_TITLE=ESTs AI007838 RUN domain containing 3B Rundc3b 688590 NM_001047116 1376214_at AA850788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850788 /DB_XREF=gi:2938328 /DB_XREF=EST193556 /CLONE=ROVAK77 /FEA=EST /CNT=6 /TID=Rn.3769.1 /TIER=ConsEnd /STK=5 /UG=Rn.3769 /UG_TITLE=ESTs, Moderately similar to T12462 hypothetical protein DKFZp564I122.1 (H.sapiens) AA850788 methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria Mmachc 313520 NM_001107962 0005739 // mitochondrion // not recorded 1376215_at AW528861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528861 /DB_XREF=gi:7171275 /DB_XREF=UI-R-BT1-akj-d-12-0-UI.s1 /CLONE=UI-R-BT1-akj-d-12-0-UI /FEA=EST /CNT=6 /TID=Rn.46419.1 /TIER=ConsEnd /STK=5 /UG=Rn.46419 /UG_TITLE=ESTs AW528861 membrane-associated ring finger (C3HC4) 11 March11 499558 NM_001101828 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376216_at AI716502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716502 /DB_XREF=gi:5033755 /DB_XREF=UI-R-Y0-ach-h-01-0-UI.s1 /CLONE=UI-R-Y0-ach-h-01-0-UI /FEA=EST /CNT=6 /TID=Rn.41053.1 /TIER=ConsEnd /STK=5 /UG=Rn.41053 /UG_TITLE=ESTs, Weakly similar to S67059 hypothetical protein YOR171c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AI716502 sphingosine kinase 2 Sphk2 308589 NM_001012066 0001568 // blood vessel development // not recorded /// 0006670 // sphingosine metabolic process // not recorded /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007565 // female pregnancy // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // not recorded /// 0016310 // phosphorylation // not recorded 0005624 // membrane fraction // not recorded /// 0005829 // cytosol // not recorded 0004143 // diacylglycerol kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0017050 // D-erythro-sphingosine kinase activity // not recorded 1376217_at BM388768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388768 /DB_XREF=gi:18188821 /DB_XREF=UI-R-DZ0-ckn-e-11-0-UI.s1 /CLONE=UI-R-DZ0-ckn-e-11-0-UI /FEA=EST /CNT=6 /TID=Rn.38762.1 /TIER=ConsEnd /STK=5 /UG=Rn.38762 /UG_TITLE=ESTs BM388768 cancer susceptibility candidate 1 Casc1 297720 NM_001106627 1376218_a_at BI273855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI273855 /DB_XREF=gi:14884214 /DB_XREF=UI-R-CW0-bvz-g-05-0-UI.s1 /CLONE=UI-R-CW0-bvz-g-05-0-UI /FEA=EST /CNT=6 /TID=Rn.24221.1 /TIER=ConsEnd /STK=5 /UG=Rn.24221 /UG_TITLE=ESTs BI273855 Probable phospholipid-transporting ATPase ID-like LOC100364800 100364800 XM_002725994 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0015914 // phospholipid transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004012 // phospholipid-translocating ATPase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation 1376219_at BI273855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI273855 /DB_XREF=gi:14884214 /DB_XREF=UI-R-CW0-bvz-g-05-0-UI.s1 /CLONE=UI-R-CW0-bvz-g-05-0-UI /FEA=EST /CNT=6 /TID=Rn.24221.1 /TIER=ConsEnd /STK=5 /UG=Rn.24221 /UG_TITLE=ESTs BI273855 Probable phospholipid-transporting ATPase ID-like LOC100364800 100364800 XM_002725994 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0015914 // phospholipid transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004012 // phospholipid-translocating ATPase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation 1376220_at BI299759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299759 /DB_XREF=gi:14976039 /DB_XREF=UI-R-CV2-chw-h-10-0-UI.s1 /CLONE=UI-R-CV2-chw-h-10-0-UI /FEA=EST /CNT=6 /TID=Rn.76748.1 /TIER=ConsEnd /STK=5 /UG=Rn.76748 /UG_TITLE=ESTs BI299759 0007275 // multicellular organismal development // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1376221_at BG373555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373555 /DB_XREF=gi:13270092 /DB_XREF=UI-R-CV1-bse-b-09-0-UI.s1 /CLONE=UI-R-CV1-bse-b-09-0-UI /FEA=EST /CNT=6 /TID=Rn.26979.1 /TIER=ConsEnd /STK=5 /UG=Rn.26979 /UG_TITLE=ESTs BG373555 coiled-coil domain containing 97 Ccdc97 292724 NM_001106235 1376222_at AI710677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI710677 /DB_XREF=gi:5000453 /DB_XREF=UI-R-AC0-yh-a-10-0-UI.s1 /CLONE=UI-R-AC0-yh-a-10-0-UI /FEA=EST /CNT=6 /TID=Rn.23858.1 /TIER=ConsEnd /STK=5 /UG=Rn.23858 /UG_TITLE=ESTs AI710677 short chain dehydrogenase/reductase family 39U, member 1 Sdr39u1 361044 NM_001108378 0008152 // metabolic process // inferred from electronic annotation /// 0044237 // cellular metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation 1376223_at BE120464 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120464 /DB_XREF=gi:8512569 /DB_XREF=UI-R-CA0-bam-g-07-0-UI.s1 /CLONE=UI-R-CA0-bam-g-07-0-UI /FEA=EST /CNT=6 /TID=Rn.45779.1 /TIER=ConsEnd /STK=5 /UG=Rn.45779 /UG_TITLE=ESTs BE120464 similar to Ab2-095 RGD1309079 315891 NM_001134472 1376224_at BE106971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106971 /DB_XREF=gi:8499073 /DB_XREF=UI-R-BT1-ass-c-10-0-UI.s1 /CLONE=UI-R-BT1-ass-c-10-0-UI /FEA=EST /CNT=6 /TID=Rn.51090.1 /TIER=ConsEnd /STK=5 /UG=Rn.51090 /UG_TITLE=ESTs BE106971 Extracellular leucine-rich repeat and fibronectin type III domain containing 2 Elfn2 315117 XR_085885 /// XR_086301 0005634 // nucleus // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 1376225_at BF411924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411924 /DB_XREF=gi:11399953 /DB_XREF=UI-R-BT1-bmx-f-10-0-UI.s1 /CLONE=UI-R-BT1-bmx-f-10-0-UI /FEA=EST /CNT=6 /TID=Rn.12058.1 /TIER=ConsEnd /STK=5 /UG=Rn.12058 /UG_TITLE=ESTs BF411924 1376226_at BG377636 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377636 /DB_XREF=gi:13302108 /DB_XREF=UI-R-CU0-bve-b-07-0-UI.s1 /CLONE=UI-R-CU0-bve-b-07-0-UI /FEA=EST /CNT=6 /TID=Rn.23244.1 /TIER=ConsEnd /STK=5 /UG=Rn.23244 /UG_TITLE=ESTs BG377636 1376227_at AI716887 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716887 /DB_XREF=gi:5034143 /DB_XREF=UI-R-Y0-aci-d-02-0-UI.s1 /CLONE=UI-R-Y0-aci-d-02-0-UI /FEA=EST /CNT=6 /TID=Rn.41395.1 /TIER=ConsEnd /STK=5 /UG=Rn.41395 /UG_TITLE=ESTs AI716887 myozenin 1 Myoz1 498440 NM_001109097 0015629 // actin cytoskeleton // not recorded 0005515 // protein binding // not recorded /// 0051373 // FATZ binding // not recorded 1376228_at BF419434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419434 /DB_XREF=gi:11407423 /DB_XREF=UI-R-CA1-bnr-f-04-0-UI.s1 /CLONE=UI-R-CA1-bnr-f-04-0-UI /FEA=EST /CNT=6 /TID=Rn.43445.1 /TIER=ConsEnd /STK=5 /UG=Rn.43445 /UG_TITLE=ESTs BF419434 1376229_at BF419138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419138 /DB_XREF=gi:11407168 /DB_XREF=UI-R-BJ2-bqo-e-09-0-UI.s1 /CLONE=UI-R-BJ2-bqo-e-09-0-UI /FEA=EST /CNT=6 /TID=Rn.38973.1 /TIER=ConsEnd /STK=5 /UG=Rn.38973 /UG_TITLE=ESTs, Weakly similar to FXO1 MOUSE FORKHEAD PROTEIN O1A (M.musculus) BF419138 Forkhead box O3 Foxo3 294515 NM_001106395 0001542 // ovulation from ovarian follicle // not recorded /// 0001544 // initiation of primordial ovarian follicle growth // not recorded /// 0001547 // antral ovarian follicle growth // not recorded /// 0001556 // oocyte maturation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006915 // apoptosis // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0030330 // DNA damage response, signal transduction by p53 class mediator // not recorded /// 0042593 // glucose homeostasis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045648 // positive regulation of erythrocyte differentiation // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0019901 // protein kinase binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1376230_at BF410584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410584 /DB_XREF=gi:11398559 /DB_XREF=UI-R-CA0-bma-d-12-0-UI.s1 /CLONE=UI-R-CA0-bma-d-12-0-UI /FEA=EST /CNT=6 /TID=Rn.52367.1 /TIER=ConsEnd /STK=5 /UG=Rn.52367 /UG_TITLE=ESTs BF410584 transmembrane protein 82 Tmem82 298605 XM_001072960 /// XM_238429 1376231_at BF389244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389244 /DB_XREF=gi:11374074 /DB_XREF=UI-R-BS2-bdi-e-07-0-UI.s1 /CLONE=UI-R-BS2-bdi-e-07-0-UI /FEA=EST /CNT=6 /TID=Rn.18312.1 /TIER=ConsEnd /STK=5 /UG=Rn.18312 /UG_TITLE=ESTs, Moderately similar to Y181_HUMAN HYPOTHETICAL PROTEIN KIAA0186 (H.sapiens) BF389244 GINS complex subunit 1 (Psf1 homolog) Gins1 499914 NM_001109207 0001833 // inner cell mass cell proliferation // inferred from electronic annotation /// 0001833 // inner cell mass cell proliferation // not recorded /// 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376232_at AW521352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521352 /DB_XREF=gi:7163730 /DB_XREF=UI-R-BO0-agl-e-06-0-UI.s1 /CLONE=UI-R-BO0-agl-e-06-0-UI /FEA=EST /CNT=6 /TID=Rn.45164.1 /TIER=ConsEnd /STK=5 /UG=Rn.45164 /UG_TITLE=ESTs AW521352 1376233_at AI144891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144891 /DB_XREF=gi:3666690 /DB_XREF=UI-R-BT0-pp-b-01-0-UI.s1 /CLONE=UI-R-BT0-pp-b-01-0-UI /FEA=EST /CNT=6 /TID=Rn.19002.1 /TIER=ConsEnd /STK=5 /UG=Rn.19002 /UG_TITLE=ESTs AI144891 Discs, large (Drosophila) homolog-associated protein 3 Dlgap3 286923 NM_173138 0007267 // cell-cell signaling // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0001540 // beta-amyloid binding // inferred from electronic annotation /// 0001540 // beta-amyloid binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from direct assay 1376234_at AA957808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957808 /DB_XREF=gi:4277698 /DB_XREF=UI-R-E1-fz-a-08-0-UI.s1 /CLONE=UI-R-E1-fz-a-08-0-UI /FEA=EST /CNT=6 /TID=Rn.8866.1 /TIER=ConsEnd /STK=5 /UG=Rn.8866 /UG_TITLE=ESTs, Weakly similar to SNX9_HUMAN SORTING NEXIN 9 (SH3 AND PX DOMAIN-CONTAINING PROTEIN 1) (SDP1 PROTEIN) (H.sapiens) AA957808 Sorting nexin 18 Snx18 310097 NM_001107652 0007154 // cell communication // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1376235_at BI289136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289136 /DB_XREF=gi:14946400 /DB_XREF=UI-R-DK0-cfe-h-06-0-UI.s1 /CLONE=UI-R-DK0-cfe-h-06-0-UI /FEA=EST /CNT=6 /TID=Rn.15451.1 /TIER=ConsEnd /STK=5 /UG=Rn.15451 /UG_TITLE=ESTs BI289136 1376236_at AW534476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534476 /DB_XREF=gi:7176890 /DB_XREF=UI-R-BS0-ans-a-07-0-UI.s1 /CLONE=UI-R-BS0-ans-a-07-0-UI /FEA=EST /CNT=6 /TID=Rn.22949.1 /TIER=ConsEnd /STK=5 /UG=Rn.22949 /UG_TITLE=ESTs, Highly similar to KIAA0383 (H.sapiens) AW534476 1376237_at AI145040 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145040 /DB_XREF=gi:3666839 /DB_XREF=UI-R-BT0-pr-h-11-0-UI.s1 /CLONE=UI-R-BT0-pr-h-11-0-UI /FEA=EST /CNT=6 /TID=Rn.20947.1 /TIER=ConsEnd /STK=5 /UG=Rn.20947 /UG_TITLE=ESTs AI145040 1376238_at BI288733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288733 /DB_XREF=gi:14945602 /DB_XREF=UI-R-DK0-cde-c-11-0-UI.s1 /CLONE=UI-R-DK0-cde-c-11-0-UI /FEA=EST /CNT=6 /TID=Rn.64290.1 /TIER=ConsEnd /STK=5 /UG=Rn.64290 /UG_TITLE=ESTs BI288733 HUS1 checkpoint homolog (S. pombe) Hus1 498411 NM_001109092 0000077 // DNA damage checkpoint // not recorded /// 0000724 // double-strand break repair via homologous recombination // not recorded /// 0006260 // DNA replication // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0008156 // negative regulation of DNA replication // not recorded /// 0009411 // response to UV // not recorded /// 0009790 // embryo development // not recorded /// 0031575 // mitotic cell cycle G1/S transition checkpoint // not recorded 0005634 // nucleus // not recorded 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // not recorded 1376239_at BF283053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283053 /DB_XREF=gi:11214123 /DB_XREF=EST447644 /CLONE=RGIDW80 /FEA=EST /CNT=6 /TID=Rn.33759.1 /TIER=ConsEnd /STK=5 /UG=Rn.33759 /UG_TITLE=ESTs, Weakly similar to VATC_MOUSE VACUOLAR ATP SYNTHASE SUBUNIT C (V-ATPASE C SUBUNIT) (VACUOLAR PROTON PUMP C SUBUNIT) (M.musculus) BF283053 ATPase, H+ transporting, lysosomal V1 subunit C2 Atp6v1c2 362802 NM_001014199 0006200 // ATP catabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0015992 // proton transport // not recorded /// 0034220 // ion transmembrane transport // not recorded 0033180 // proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008553 // hydrogen-exporting ATPase activity, phosphorylative mechanism // not recorded /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation 1376240_at BG378240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378240 /DB_XREF=gi:13302712 /DB_XREF=UI-R-CV1-bvp-f-12-0-UI.s1 /CLONE=UI-R-CV1-bvp-f-12-0-UI /FEA=EST /CNT=6 /TID=Rn.22949.2 /TIER=ConsEnd /STK=5 /UG=Rn.22949 /UG_TITLE=ESTs, Highly similar to KIAA0383 (H.sapiens) BG378240 1376241_at AA858761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858761 /DB_XREF=gi:4228954 /DB_XREF=UI-R-A0-bb-f-05-0-UI.s1 /CLONE=UI-R-A0-bb-f-05-0-UI /FEA=EST /CNT=6 /TID=Rn.34259.1 /TIER=ConsEnd /STK=5 /UG=Rn.34259 /UG_TITLE=ESTs, Highly similar to CUL3_MOUSE Cullin homolog 3 (CUL-3) (M.musculus) AA858761 Cullin 3 Cul3 301555 NM_001106923 0000090 // mitotic anaphase // not recorded /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0000910 // cytokinesis // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001831 // trophectodermal cellular morphogenesis // inferred from electronic annotation /// 0001831 // trophectodermal cellular morphogenesis // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007369 // gastrulation // inferred from electronic annotation /// 0007369 // gastrulation // not recorded /// 0008054 // cyclin catabolic process // inferred from electronic annotation /// 0008054 // cyclin catabolic process // not recorded /// 0016477 // cell migration // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0035024 // negative regulation of Rho protein signal transduction // not recorded /// 0043149 // stress fiber assembly // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051322 // anaphase // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005827 // polar microtubule // not recorded /// 0031461 // cullin-RING ubiquitin ligase complex // inferred from electronic annotation /// 0031463 // Cul3-RING ubiquitin ligase complex // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030332 // cyclin binding // inferred from electronic annotation /// 0030332 // cyclin binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation 1376242_at BF402365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402365 /DB_XREF=gi:11390340 /DB_XREF=UI-R-CA0-bhn-d-05-0-UI.s1 /CLONE=UI-R-CA0-bhn-d-05-0-UI /FEA=EST /CNT=6 /TID=Rn.38126.1 /TIER=ConsEnd /STK=5 /UG=Rn.38126 /UG_TITLE=ESTs BF402365 1376243_at BI278780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278780 /DB_XREF=gi:14925968 /DB_XREF=UI-R-CZ0-bzb-g-06-0-UI.s1 /CLONE=UI-R-CZ0-bzb-g-06-0-UI /FEA=EST /CNT=6 /TID=Rn.34266.1 /TIER=ConsEnd /STK=5 /UG=Rn.34266 /UG_TITLE=ESTs, Weakly similar to plasminogen activator inhibitor 2 type A (Rattus norvegicus) (R.norvegicus) BI278780 serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12 Serpinb12 304692 NM_001135867 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // not recorded /// 0005515 // protein binding // not recorded 1376244_at BF399389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399389 /DB_XREF=gi:11384393 /DB_XREF=UI-R-CA1-bjb-o-08-0-UI.s1 /CLONE=UI-R-CA1-bjb-o-08-0-UI /FEA=EST /CNT=6 /TID=Rn.59363.1 /TIER=ConsEnd /STK=5 /UG=Rn.59363 /UG_TITLE=ESTs BF399389 1376245_x_at AI705744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI705744 /DB_XREF=gi:4993644 /DB_XREF=UI-R-AD1-zq-d-01-0-UI.s1 /CLONE=UI-R-AD1-zq-d-01-0-UI /FEA=EST /CNT=6 /TID=Rn.41398.1 /TIER=ConsEnd /STK=5 /UG=Rn.41398 /UG_TITLE=ESTs, Weakly similar to Y167_HUMAN HYPOTHETICAL PROTEIN KIAA0167 (H.sapiens) AI705744 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 Agap3 362300 NM_001108616 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1376246_at BE104375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104375 /DB_XREF=gi:8496475 /DB_XREF=UI-R-BX0-aro-b-03-0-UI.s1 /CLONE=UI-R-BX0-aro-b-03-0-UI /FEA=EST /CNT=6 /TID=Rn.40923.1 /TIER=ConsEnd /STK=5 /UG=Rn.40923 /UG_TITLE=ESTs BE104375 Notch-regulated ankyrin repeat protein Nrarp 499745 NM_001143750 1376247_at BF403197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403197 /DB_XREF=gi:11391172 /DB_XREF=UI-R-CA0-bhs-g-11-0-UI.s1 /CLONE=UI-R-CA0-bhs-g-11-0-UI /FEA=EST /CNT=6 /TID=Rn.59912.1 /TIER=ConsEnd /STK=5 /UG=Rn.59912 /UG_TITLE=ESTs, Moderately similar to PHOSPHOENOLPYRUVATE CARBOXYKINASE, CYTOSOLIC (R.norvegicus) BF403197 phosphoenolpyruvate carboxykinase 2 (mitochondrial) Pck2 361042 NM_001108377 0006094 // gluconeogenesis // inferred from direct assay /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006107 // oxaloacetate metabolic process // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0004611 // phosphoenolpyruvate carboxykinase activity // inferred from direct assay /// 0004611 // phosphoenolpyruvate carboxykinase activity // inferred from electronic annotation /// 0004613 // phosphoenolpyruvate carboxykinase (GTP) activity // inferred from direct assay /// 0004613 // phosphoenolpyruvate carboxykinase (GTP) activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0017076 // purine nucleotide binding // inferred from electronic annotation 1376248_at BM390571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390571 /DB_XREF=gi:18190624 /DB_XREF=UI-R-CN1-cjr-i-19-0-UI.s1 /CLONE=UI-R-CN1-cjr-i-19-0-UI /FEA=EST /CNT=6 /TID=Rn.12882.1 /TIER=ConsEnd /STK=5 /UG=Rn.12882 /UG_TITLE=ESTs, Weakly similar to SUH2 RAT PROBABLE ALCOHOL SULFOTRANSFERASE (R.norvegicus) BM390571 sulfotransferase family, cytosolic, 2B, member 1 Sult2b1 292915 NM_001039665 0000103 // sulfate assimilation // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004027 // alcohol sulfotransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008146 // sulfotransferase activity // not recorded /// 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0050294 // steroid sulfotransferase activity // not recorded 1376249_at BM389993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389993 /DB_XREF=gi:18190046 /DB_XREF=UI-R-CN1-cjo-i-12-0-UI.s1 /CLONE=UI-R-CN1-cjo-i-12-0-UI /FEA=EST /CNT=6 /TID=Rn.47769.1 /TIER=ConsEnd /STK=5 /UG=Rn.47769 /UG_TITLE=ESTs, Weakly similar to S10235 alpha-L-fucosidase (R.norvegicus) BM389993 fucosidase, alpha-L- 2, plasma Fuca2 292485 NM_001004218 0005975 // carbohydrate metabolic process // traceable author statement /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006004 // fucose metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004560 // alpha-L-fucosidase activity // traceable author statement /// 0004560 // alpha-L-fucosidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation 1376250_at BI284814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284814 /DB_XREF=gi:14937831 /DB_XREF=UI-R-CX0s-ccs-e-11-0-UI.s1 /CLONE=UI-R-CX0s-ccs-e-11-0-UI /FEA=EST /CNT=6 /TID=Rn.8890.1 /TIER=ConsEnd /STK=5 /UG=Rn.8890 /UG_TITLE=ESTs BI284814 nuclear fragile X mental retardation protein interacting protein 1 Nufip1 364430 NM_001007758 0000492 // box C/D snoRNP assembly // inferred from electronic annotation /// 0000492 // box C/D snoRNP assembly // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005726 // perichromatin fibrils // inferred from electronic annotation /// 0005726 // perichromatin fibrils // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0008023 // transcription elongation factor complex // inferred from electronic annotation /// 0008023 // transcription elongation factor complex // not recorded /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded /// 0022626 // cytosolic ribosome // inferred from electronic annotation /// 0022626 // cytosolic ribosome // not recorded /// 0048786 // presynaptic active zone // inferred from electronic annotation /// 0048786 // presynaptic active zone // not recorded /// 0070761 // pre-snoRNP complex // inferred from electronic annotation /// 0070761 // pre-snoRNP complex // not recorded 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030515 // snoRNA binding // inferred from electronic annotation /// 0030515 // snoRNA binding // not recorded /// 0030674 // protein binding, bridging // inferred from electronic annotation /// 0030674 // protein binding, bridging // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1376251_at BE107622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107622 /DB_XREF=gi:8499727 /DB_XREF=UI-R-CA0-awv-g-10-0-UI.s1 /CLONE=UI-R-CA0-awv-g-10-0-UI /FEA=EST /CNT=6 /TID=Rn.51226.1 /TIER=ConsEnd /STK=5 /UG=Rn.51226 /UG_TITLE=ESTs BE107622 1376252_at AI145784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145784 /DB_XREF=gi:3667583 /DB_XREF=UI-R-BT0-qi-a-11-0-UI.s1 /CLONE=UI-R-BT0-qi-a-11-0-UI /FEA=EST /CNT=6 /TID=Rn.18181.1 /TIER=ConsEnd /STK=5 /UG=Rn.18181 /UG_TITLE=ESTs AI145784 splicing factor, arginine/serine-rich 3 Sfrs3 361814 NM_001047907 0008380 // RNA splicing // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376253_at AW434178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434178 /DB_XREF=gi:6965485 /DB_XREF=UI-R-BJ0p-aft-b-03-0-UI.s1 /CLONE=UI-R-BJ0p-aft-b-03-0-UI /FEA=EST /CNT=6 /TID=Rn.7534.1 /TIER=ConsEnd /STK=5 /UG=Rn.7534 /UG_TITLE=ESTs AW434178 lymphocyte antigen 6 complex, locus H Ly6h 300025 NM_001134839 1376254_at AI549339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549339 /DB_XREF=gi:4466827 /DB_XREF=UI-R-C3-ty-e-07-0-UI.s1 /CLONE=UI-R-C3-ty-e-07-0-UI /FEA=EST /CNT=6 /TID=Rn.23477.1 /TIER=ConsEnd /STK=5 /UG=Rn.23477 /UG_TITLE=ESTs AI549339 KIAA1440-like LOC100365889 100365889 XM_002724782 1376255_at BF284982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284982 /DB_XREF=gi:11216052 /DB_XREF=EST449573 /CLONE=RGIEY33 /FEA=EST /CNT=6 /TID=Rn.7275.1 /TIER=ConsEnd /STK=5 /UG=Rn.7275 /UG_TITLE=ESTs, Weakly similar to A53714 protein kinase (H.sapiens) BF284982 mitogen activated protein kinase kinase kinase kinase 1 Map4k1 292763 NM_001106243 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006950 // response to stress // not recorded /// 0007243 // intracellular protein kinase cascade // not recorded /// 0018105 // peptidyl-serine phosphorylation // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008349 // MAP kinase kinase kinase kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1376256_at BE108131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108131 /DB_XREF=gi:8500236 /DB_XREF=UI-R-CA0-axa-g-04-0-UI.s1 /CLONE=UI-R-CA0-axa-g-04-0-UI /FEA=EST /CNT=6 /TID=Rn.8557.1 /TIER=ConsEnd /STK=5 /UG=Rn.8557 /UG_TITLE=ESTs, Weakly similar to I49759 Hrs - mouse (M.musculus) BE108131 WD repeat and FYVE domain containing 1 Wdfy1 301549 NM_001008331 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376257_at AW520814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520814 /DB_XREF=gi:7163192 /DB_XREF=UI-R-BJ0p-agh-g-10-0-UI.s1 /CLONE=UI-R-BJ0p-agh-g-10-0-UI /FEA=EST /CNT=8 /TID=Rn.27833.1 /TIER=ConsEnd /STK=5 /UG=Rn.27833 /UG_TITLE=ESTs AW520814 zinc finger protein 629 Znf629 308998 NM_001107551 0005634 // nucleus // not recorded 1376258_at AI406785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406785 /DB_XREF=gi:4250289 /DB_XREF=EST235072 /CLONE=RBRDI43 /FEA=EST /CNT=7 /TID=Rn.15148.1 /TIER=ConsEnd /STK=5 /UG=Rn.15148 /UG_TITLE=ESTs, Moderately similar to S27383 elastase inhibitor (H.sapiens) AI406785 similar to serine (or cysteine) proteinase inhibitor, clade B, member 1a LOC691289 691289 XM_002725234 /// XM_002728473 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation 1376259_at AI171093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171093 /DB_XREF=gi:3711133 /DB_XREF=EST217041 /CLONE=RMUBG06 /FEA=EST /CNT=7 /TID=Rn.8227.1 /TIER=ConsEnd /STK=5 /UG=Rn.8227 /UG_TITLE=ESTs AI171093 protein kinase C, theta Prkcq 85420 XM_001064127 /// XM_341553 0001666 // response to hypoxia // inferred from expression pattern /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0007568 // aging // inferred from expression pattern /// 0009408 // response to heat // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010389 // regulation of G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019229 // regulation of vasoconstriction // inferred from expression pattern /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // not recorded /// 0030182 // neuron differentiation // inferred from expression pattern /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0042246 // tissue regeneration // inferred from expression pattern /// 0042346 // positive regulation of NF-kappaB import into nucleus // inferred from mutant phenotype /// 0045086 // positive regulation of interleukin-2 biosynthetic process // inferred from electronic annotation /// 0045086 // positive regulation of interleukin-2 biosynthetic process // not recorded /// 0045730 // respiratory burst // inferred from expression pattern /// 0050714 // positive regulation of protein secretion // inferred from direct assay /// 0050870 // positive regulation of T cell activation // not recorded /// 0050870 // positive regulation of T cell activation // inferred from electronic annotation /// 0051491 // positive regulation of filopodium assembly // inferred from mutant phenotype /// 0051496 // positive regulation of stress fiber assembly // inferred from mutant phenotype 0001772 // immunological synapse // inferred from electronic annotation /// 0001772 // immunological synapse // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from direct assay /// 0042383 // sarcolemma // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0004697 // protein kinase C activity // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376260_at BI274279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274279 /DB_XREF=gi:14885062 /DB_XREF=UI-R-CW0-bwh-a-10-0-UI.s1 /CLONE=UI-R-CW0-bwh-a-10-0-UI /FEA=EST /CNT=7 /TID=Rn.40840.1 /TIER=ConsEnd /STK=5 /UG=Rn.40840 /UG_TITLE=ESTs BI274279 methyltransferase like 14 Mettl14 295428 NM_001106470 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation 0008168 // methyltransferase activity // inferred from electronic annotation 1376261_at BI282898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282898 /DB_XREF=gi:14934120 /DB_XREF=UI-R-CW0s-ccc-f-08-0-UI.s1 /CLONE=UI-R-CW0s-ccc-f-08-0-UI /FEA=EST /CNT=7 /TID=Rn.76368.1 /TIER=ConsEnd /STK=5 /UG=Rn.76368 /UG_TITLE=ESTs, Weakly similar to BAG3_MOUSE BAG-FAMILY MOLECULAR CHAPERONE REGULATOR-3 (BCL-2 BINDING ATHANOGENE-3) (BAG-3) (BCL-2-BINDING PROTEIN BIS) (M.musculus) BI282898 BCL2-associated athanogene 5 Bag5 366734 NM_001008526 0006915 // apoptosis // inferred from electronic annotation /// 0031397 // negative regulation of protein ubiquitination // inferred from direct assay /// 0051444 // negative regulation of ubiquitin-protein ligase activity // inferred from direct assay /// 0061084 // negative regulation of protein refolding // inferred from mutant phenotype /// 0070997 // neuron death // inferred from direct assay /// 0090083 // regulation of inclusion body assembly // inferred from direct assay /// 0090083 // regulation of inclusion body assembly // not recorded /// 0090083 // regulation of inclusion body assembly // inferred from electronic annotation 0016234 // inclusion body // not recorded /// 0016234 // inclusion body // inferred from sequence or structural similarity /// 0016234 // inclusion body // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0051087 // chaperone binding // inferred from direct assay /// 0051087 // chaperone binding // not recorded /// 0051087 // chaperone binding // inferred from electronic annotation 1376262_at BM385390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385390 /DB_XREF=gi:18185443 /DB_XREF=UI-R-CN1-clv-j-13-0-UI.s1 /CLONE=UI-R-CN1-clv-j-13-0-UI /FEA=EST /CNT=7 /TID=Rn.3037.2 /TIER=ConsEnd /STK=5 /UG=Rn.3037 /UG_TITLE=ESTs BM385390 UDP-glucuronate decarboxylase 1 Uxs1 246232 NM_139336 0008152 // metabolic process // inferred from electronic annotation /// 0044237 // cellular metabolic process // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation /// 0048040 // UDP-glucuronate decarboxylase activity // inferred from direct assay /// 0048040 // UDP-glucuronate decarboxylase activity // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation 1376263_at BG378672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378672 /DB_XREF=gi:13303144 /DB_XREF=UI-R-BT1-bnj-c-09-0-UI.s1 /CLONE=UI-R-BT1-bnj-c-09-0-UI /FEA=EST /CNT=7 /TID=Rn.50391.1 /TIER=ConsEnd /STK=5 /UG=Rn.50391 /UG_TITLE=ESTs BG378672 meteorin, glial cell differentiation regulator Metrn 287151 NM_001009962 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0010001 // glial cell differentiation // inferred from electronic annotation /// 0010001 // glial cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0050772 // positive regulation of axonogenesis // inferred from electronic annotation /// 0050772 // positive regulation of axonogenesis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 1376264_at AW526697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526697 /DB_XREF=gi:7169111 /DB_XREF=UI-R-BT1-ake-a-06-0-UI.s1 /CLONE=UI-R-BT1-ake-a-06-0-UI /FEA=EST /CNT=7 /TID=Rn.14732.1 /TIER=ConsEnd /STK=5 /UG=Rn.14732 /UG_TITLE=ESTs AW526697 1376265_at AI411542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411542 /DB_XREF=gi:4255046 /DB_XREF=EST239836 /CLONE=RKIEK20 /FEA=EST /CNT=6 /TID=Rn.16588.1 /TIER=ConsEnd /STK=5 /UG=Rn.16588 /UG_TITLE=ESTs AI411542 six transmembrane epithelial antigen of the prostate 2 Steap2 312052 NM_001107846 0006893 // Golgi to plasma membrane transport // not recorded /// 0006897 // endocytosis // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009725 // response to hormone stimulus // not recorded /// 0045055 // regulated secretory pathway // not recorded 0005769 // early endosome // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030140 // trans-Golgi network transport vesicle // not recorded /// 0030173 // integral to Golgi membrane // not recorded /// 0042598 // vesicular fraction // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005215 // transporter activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1376266_at AA819086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819086 /DB_XREF=gi:4227750 /DB_XREF=UI-R-A0-ao-b-10-0-UI.s1 /CLONE=UI-R-A0-ao-b-10-0-UI /FEA=EST /CNT=6 /TID=Rn.16604.1 /TIER=ConsEnd /STK=5 /UG=Rn.16604 /UG_TITLE=ESTs AA819086 1376267_at AA859652 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859652 /DB_XREF=gi:4230197 /DB_XREF=UI-R-E0-bs-b-06-0-UI.s1 /CLONE=UI-R-E0-bs-b-06-0-UI /FEA=EST /CNT=6 /TID=Rn.35.1 /TIER=ConsEnd /STK=5 /UG=Rn.35 /UG_TITLE=ESTs AA859652 1376268_at BM387435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387435 /DB_XREF=gi:18187488 /DB_XREF=UI-R-CN1-cjj-c-12-0-UI.s1 /CLONE=UI-R-CN1-cjj-c-12-0-UI /FEA=EST /CNT=6 /TID=Rn.15231.1 /TIER=ConsEnd /STK=5 /UG=Rn.15231 /UG_TITLE=ESTs BM387435 1376269_at BI291328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291328 /DB_XREF=gi:14950764 /DB_XREF=UI-R-CV2-cgo-e-10-0-UI.s1 /CLONE=UI-R-CV2-cgo-e-10-0-UI /FEA=EST /CNT=6 /TID=Rn.67007.1 /TIER=ConsEnd /STK=5 /UG=Rn.67007 /UG_TITLE=ESTs, Moderately similar to T02435 probable oxysterol-binding protein DJ430N08.1 (H.sapiens) BI291328 oxysterol binding protein 2 Osbp2 305475 NM_001107232 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation 1376270_at AI059493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059493 /DB_XREF=gi:3333270 /DB_XREF=UI-R-C1-lg-g-04-0-UI.s1 /CLONE=UI-R-C1-lg-g-04-0-UI /FEA=EST /CNT=6 /TID=Rn.36341.1 /TIER=ConsEnd /STK=5 /UG=Rn.36341 /UG_TITLE=ESTs, Weakly similar to T27173 hypothetical protein Y54G11A.9 - Caenorhabditis elegans (C.elegans) AI059493 1376271_at AI178914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178914 /DB_XREF=gi:4135107 /DB_XREF=EST222596 /CLONE=RSPBT19 /FEA=EST /CNT=6 /TID=Rn.24197.1 /TIER=ConsEnd /STK=5 /UG=Rn.24197 /UG_TITLE=ESTs, Weakly similar to T23419 hypothetical protein K07F5.14 - Caenorhabditis elegans (C.elegans) AI178914 AA926063gene /// rCG44733-like AA926063 /// LOC100363863 100363863 /// 294284 NR_002156 /// XM_002725832 1376272_s_at AI178914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178914 /DB_XREF=gi:4135107 /DB_XREF=EST222596 /CLONE=RSPBT19 /FEA=EST /CNT=6 /TID=Rn.24197.1 /TIER=ConsEnd /STK=5 /UG=Rn.24197 /UG_TITLE=ESTs, Weakly similar to T23419 hypothetical protein K07F5.14 - Caenorhabditis elegans (C.elegans) AI178914 rCG44733-like LOC100363863 100363863 XM_002725832 1376273_at BI285089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285089 /DB_XREF=gi:14938386 /DB_XREF=UI-R-DB0-byw-a-10-0-UI.s1 /CLONE=UI-R-DB0-byw-a-10-0-UI /FEA=EST /CNT=6 /TID=Rn.35490.1 /TIER=ConsEnd /STK=5 /UG=Rn.35490 /UG_TITLE=ESTs, Weakly similar to T21419 hypothetical protein F26E4.13 - Caenorhabditis elegans (C.elegans) BI285089 ribonuclease type III, nuclear Rnasen 310159 NM_001107655 0006364 // rRNA processing // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0016075 // rRNA catabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0004525 // ribonuclease III activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376274_at AI233751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233751 /DB_XREF=gi:4135911 /DB_XREF=EST230439 /CLONE=RKIDJ61 /FEA=EST /CNT=6 /TID=Rn.2717.1 /TIER=ConsEnd /STK=5 /UG=Rn.2717 /UG_TITLE=ESTs, Moderately similar to dJ108K11.3 (H.sapiens) AI233751 BTB (POZ) domain containing 10 Btbd10 308890 NM_001014022 0005515 // protein binding // inferred from electronic annotation 1376275_at BE101108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101108 /DB_XREF=gi:8493016 /DB_XREF=UI-R-BJ1-auh-b-12-0-UI.s1 /CLONE=UI-R-BJ1-auh-b-12-0-UI /FEA=EST /CNT=6 /TID=Rn.32291.1 /TIER=ConsEnd /STK=5 /UG=Rn.32291 /UG_TITLE=ESTs BE101108 1376276_at BF390773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390773 /DB_XREF=gi:11375620 /DB_XREF=UI-R-CA1-bcp-c-09-0-UI.s1 /CLONE=UI-R-CA1-bcp-c-09-0-UI /FEA=EST /CNT=6 /TID=Rn.65237.1 /TIER=ConsEnd /STK=5 /UG=Rn.65237 /UG_TITLE=ESTs BF390773 1376277_at AI412413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412413 /DB_XREF=gi:4255917 /DB_XREF=EST240712 /CLONE=RBRDO62 /FEA=EST /CNT=6 /TID=Rn.21882.1 /TIER=ConsEnd /STK=5 /UG=Rn.21882 /UG_TITLE=ESTs AI412413 1376278_at BI282100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282100 /DB_XREF=gi:14932509 /DB_XREF=UI-R-CU0s-cbw-e-09-0-UI.s1 /CLONE=UI-R-CU0s-cbw-e-09-0-UI /FEA=EST /CNT=6 /TID=Rn.24686.1 /TIER=ConsEnd /STK=5 /UG=Rn.24686 /UG_TITLE=ESTs BI282100 1376279_at BM389467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389467 /DB_XREF=gi:18189520 /DB_XREF=UI-R-CN1-cjn-h-07-0-UI.s1 /CLONE=UI-R-CN1-cjn-h-07-0-UI /FEA=EST /CNT=6 /TID=Rn.46777.1 /TIER=ConsEnd /STK=5 /UG=Rn.46777 /UG_TITLE=ESTs BM389467 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) Pop1 315045 NM_001130550 0001682 // tRNA 5'-leader removal // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0016078 // tRNA catabolic process // not recorded 0000172 // ribonuclease MRP complex // not recorded /// 0005655 // nucleolar ribonuclease P complex // not recorded 0000171 // ribonuclease MRP activity // not recorded /// 0004526 // ribonuclease P activity // inferred from electronic annotation /// 0004526 // ribonuclease P activity // not recorded /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1376280_at AA799789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799789 /DB_XREF=gi:4131438 /DB_XREF=EST189286 /CLONE=RHEAF37 /FEA=EST /CNT=6 /TID=Rn.30163.1 /TIER=ConsEnd /STK=5 /UG=Rn.30163 /UG_TITLE=ESTs AA799789 1376281_at BM389698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389698 /DB_XREF=gi:18189751 /DB_XREF=UI-R-CN1-cjp-c-22-0-UI.s1 /CLONE=UI-R-CN1-cjp-c-22-0-UI /FEA=EST /CNT=6 /TID=Rn.19890.1 /TIER=ConsEnd /STK=5 /UG=Rn.19890 /UG_TITLE=ESTs BM389698 1376282_at BM392087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392087 /DB_XREF=gi:18192140 /DB_XREF=UI-R-DO1-ckp-i-17-0-UI.s1 /CLONE=UI-R-DO1-ckp-i-17-0-UI /FEA=EST /CNT=6 /TID=Rn.46489.1 /TIER=ConsEnd /STK=5 /UG=Rn.46489 /UG_TITLE=ESTs BM392087 1376283_at BG378070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378070 /DB_XREF=gi:13302542 /DB_XREF=UI-R-CT0-bvn-e-08-0-UI.s1 /CLONE=UI-R-CT0-bvn-e-08-0-UI /FEA=EST /CNT=6 /TID=Rn.27171.1 /TIER=ConsEnd /STK=5 /UG=Rn.27171 /UG_TITLE=ESTs BG378070 1376284_at AI406517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406517 /DB_XREF=gi:4250021 /DB_XREF=EST234803 /CLONE=RBRDL33 /FEA=EST /CNT=6 /TID=Rn.27890.1 /TIER=ConsEnd /STK=5 /UG=Rn.27890 /UG_TITLE=ESTs AI406517 1376285_at BM390519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390519 /DB_XREF=gi:18190572 /DB_XREF=UI-R-CN1-cjr-a-03-0-UI.s1 /CLONE=UI-R-CN1-cjr-a-03-0-UI /FEA=EST /CNT=6 /TID=Rn.32649.1 /TIER=ConsEnd /STK=5 /UG=Rn.32649 /UG_TITLE=ESTs BM390519 GULP, engulfment adaptor PTB domain containing 1 Gulp1 314543 NM_001013171 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0006909 // phagocytosis // inferred from electronic annotation /// 0006911 // phagocytosis, engulfment // inferred from electronic annotation /// 0006911 // phagocytosis, engulfment // not recorded /// 0006915 // apoptosis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 1376286_at BF413225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413225 /DB_XREF=gi:11401214 /DB_XREF=UI-R-BT1-bny-c-05-0-UI.s1 /CLONE=UI-R-BT1-bny-c-05-0-UI /FEA=EST /CNT=6 /TID=Rn.46026.1 /TIER=ConsEnd /STK=5 /UG=Rn.46026 /UG_TITLE=ESTs BF413225 similar to hypothetical protein MGC24047 RGD1566083 298602 XM_002726606 /// XM_216580 1376287_at BM389585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389585 /DB_XREF=gi:18189638 /DB_XREF=UI-R-CN1-cjn-n-20-0-UI.s1 /CLONE=UI-R-CN1-cjn-n-20-0-UI /FEA=EST /CNT=6 /TID=Rn.15541.1 /TIER=ConsEnd /STK=5 /UG=Rn.15541 /UG_TITLE=ESTs, Weakly similar to CANS_HUMAN CALCIUM-DEPENDENT PROTEASE, SMALL SUBUNIT (H.sapiens) BM389585 calpain 13 Capn13 362701 NM_001025133 0006508 // proteolysis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1376288_at AI408455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408455 /DB_XREF=gi:4251959 /DB_XREF=EST236745 /CLONE=ROVET63 /FEA=EST /CNT=6 /TID=Rn.3282.1 /TIER=ConsEnd /STK=5 /UG=Rn.3282 /UG_TITLE=ESTs AI408455 NudC domain containing 1 Nudcd1 362906 NM_001130561 1376289_at AW252092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252092 /DB_XREF=gi:6595683 /DB_XREF=UI-R-BJ0-aee-b-01-0-UI.s1 /CLONE=UI-R-BJ0-aee-b-01-0-UI /FEA=EST /CNT=6 /TID=Rn.41420.1 /TIER=ConsEnd /STK=5 /UG=Rn.41420 /UG_TITLE=ESTs AW252092 1376290_at BF412293 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412293 /DB_XREF=gi:11400282 /DB_XREF=UI-R-BT1-bnb-g-10-0-UI.s1 /CLONE=UI-R-BT1-bnb-g-10-0-UI /FEA=EST /CNT=6 /TID=Rn.18857.1 /TIER=ConsEnd /STK=5 /UG=Rn.18857 /UG_TITLE=ESTs BF412293 1376291_at BI282331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282331 /DB_XREF=gi:14932993 /DB_XREF=UI-R-CU0s-cbz-d-03-0-UI.s1 /CLONE=UI-R-CU0s-cbz-d-03-0-UI /FEA=EST /CNT=6 /TID=Rn.19096.1 /TIER=ConsEnd /STK=5 /UG=Rn.19096 /UG_TITLE=ESTs, Weakly similar to WDR4_HUMAN WD-REPEAT PROTEIN 4 (H.sapiens) BI282331 WD repeat domain 4 Wdr4 690032 NM_001135667 1376292_at BM383423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383423 /DB_XREF=gi:18183476 /DB_XREF=UI-R-DM1-ckb-h-08-0-UI.s1 /CLONE=UI-R-DM1-ckb-h-08-0-UI /FEA=EST /CNT=6 /TID=Rn.18142.1 /TIER=ConsEnd /STK=5 /UG=Rn.18142 /UG_TITLE=ESTs BM383423 1376293_at BM385499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385499 /DB_XREF=gi:18185552 /DB_XREF=UI-R-DM1-cke-m-15-0-UI.s1 /CLONE=UI-R-DM1-cke-m-15-0-UI /FEA=EST /CNT=6 /TID=Rn.22928.1 /TIER=ConsEnd /STK=5 /UG=Rn.22928 /UG_TITLE=ESTs BM385499 endo-beta-N-acetylglucosaminidase Engase 303702 NM_001107070 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0033925 // mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity // inferred from electronic annotation 1376294_at BG375533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375533 /DB_XREF=gi:13300005 /DB_XREF=UI-R-CV1-btc-d-09-0-UI.s1 /CLONE=UI-R-CV1-btc-d-09-0-UI /FEA=EST /CNT=6 /TID=Rn.15191.1 /TIER=ConsEnd /STK=5 /UG=Rn.15191 /UG_TITLE=ESTs BG375533 Smith-Magenis syndrome chromosome region, candidate 7 homolog (human) Smcr7 497916 XM_001077609 /// XM_573103 0005515 // protein binding // not recorded 1376295_at BE119676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119676 /DB_XREF=gi:8511781 /DB_XREF=UI-R-CA0-baz-f-06-0-UI.s1 /CLONE=UI-R-CA0-baz-f-06-0-UI /FEA=EST /CNT=6 /TID=Rn.34626.1 /TIER=ConsEnd /STK=5 /UG=Rn.34626 /UG_TITLE=ESTs BE119676 1376296_at BF387347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387347 /DB_XREF=gi:11372171 /DB_XREF=UI-R-CA1-bbr-d-06-0-UI.s1 /CLONE=UI-R-CA1-bbr-d-06-0-UI /FEA=EST /CNT=6 /TID=Rn.17645.1 /TIER=ConsEnd /STK=5 /UG=Rn.17645 /UG_TITLE=ESTs BF387347 rCG32064-like LOC100361007 100361007 XM_002726288 /// XM_002729246 1376297_at BE112202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112202 /DB_XREF=gi:8504307 /DB_XREF=UI-R-BJ1-avg-h-08-0-UI.s1 /CLONE=UI-R-BJ1-avg-h-08-0-UI /FEA=EST /CNT=6 /TID=Rn.14816.1 /TIER=ConsEnd /STK=5 /UG=Rn.14816 /UG_TITLE=ESTs BE112202 arrestin domain containing 1 Arrdc1 366001 NM_001100770 1376298_at AW525099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525099 /DB_XREF=gi:7167484 /DB_XREF=UI-R-BJ0p-aim-g-09-0-UI.s1 /CLONE=UI-R-BJ0p-aim-g-09-0-UI /FEA=EST /CNT=6 /TID=Rn.29454.1 /TIER=ConsEnd /STK=5 /UG=Rn.29454 /UG_TITLE=ESTs AW525099 UPF3 regulator of nonsense transcripts homolog B (yeast) Upf3b 313449 NM_001135873 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // not recorded /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376299_at BI298889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298889 /DB_XREF=gi:14975169 /DB_XREF=UI-R-CV2-chv-g-08-0-UI.s1 /CLONE=UI-R-CV2-chv-g-08-0-UI /FEA=EST /CNT=6 /TID=Rn.73437.1 /TIER=ConsEnd /STK=5 /UG=Rn.73437 /UG_TITLE=ESTs, Weakly similar to SMCX_MOUSE SmcX protein (Xe169 protein) (M.musculus) BI298889 jumonji, AT rich interactive domain 1A (Rbp2 like) Jarid1a 312678 XM_002726483 /// XM_002729425 0045941 // positive regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0019907 // cyclin-dependent protein kinase activating kinase holoenzyme complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376300_at BI289802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289802 /DB_XREF=gi:14947755 /DB_XREF=UI-R-DK0-cfo-d-06-0-UI.s1 /CLONE=UI-R-DK0-cfo-d-06-0-UI /FEA=EST /CNT=6 /TID=Rn.47229.1 /TIER=ConsEnd /STK=5 /UG=Rn.47229 /UG_TITLE=ESTs BI289802 archaelysin family metallopeptidase 2 Amz2 360650 NM_001014121 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376301_at BE110719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110719 /DB_XREF=gi:8502865 /DB_XREF=UI-R-BJ1-avd-f-08-0-UI.s1 /CLONE=UI-R-BJ1-avd-f-08-0-UI /FEA=EST /CNT=6 /TID=Rn.49968.1 /TIER=ConsEnd /STK=5 /UG=Rn.49968 /UG_TITLE=ESTs BE110719 1376302_at AA955175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955175 /DB_XREF=gi:4234258 /DB_XREF=UI-R-A1-du-b-04-0-UI.s1 /CLONE=UI-R-A1-du-b-04-0-UI /FEA=EST /CNT=6 /TID=Rn.19720.1 /TIER=ConsEnd /STK=5 /UG=Rn.19720 /UG_TITLE=ESTs AA955175 1376303_a_at BF407469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407469 /DB_XREF=gi:11395449 /DB_XREF=UI-R-BJ2-bqs-f-10-0-UI.s1 /CLONE=UI-R-BJ2-bqs-f-10-0-UI /FEA=EST /CNT=6 /TID=Rn.44042.1 /TIER=ConsEnd /STK=5 /UG=Rn.44042 /UG_TITLE=ESTs, Weakly similar to T33571 hypothetical protein Y59C2A.2 - Caenorhabditis elegans (C.elegans) BF407469 membralin Mbrl 299608 NM_001100886 1376304_at AI716243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716243 /DB_XREF=gi:5033496 /DB_XREF=UI-R-Y0-abr-e-04-0-UI.s1 /CLONE=UI-R-Y0-abr-e-04-0-UI /FEA=EST /CNT=6 /TID=Rn.21810.1 /TIER=ConsEnd /STK=5 /UG=Rn.21810 /UG_TITLE=ESTs AI716243 1376305_at BF406540 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406540 /DB_XREF=gi:11394515 /DB_XREF=UI-R-BJ2-bpu-b-11-0-UI.s1 /CLONE=UI-R-BJ2-bpu-b-11-0-UI /FEA=EST /CNT=6 /TID=Rn.45046.1 /TIER=ConsEnd /STK=5 /UG=Rn.45046 /UG_TITLE=ESTs, Weakly similar to DnaJ (Hsp40) homolog, subfamily A, member 2 (Rattus norvegicus) (R.norvegicus) BF406540 DnaJ (Hsp40) related, subfamily B, member 13 Dnajb13 308857 NM_001005885 0006457 // protein folding // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1376306_at BE112643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112643 /DB_XREF=gi:8504748 /DB_XREF=UI-R-BJ1-avj-a-09-0-UI.s1 /CLONE=UI-R-BJ1-avj-a-09-0-UI /FEA=EST /CNT=6 /TID=Rn.35206.1 /TIER=ConsEnd /STK=5 /UG=Rn.35206 /UG_TITLE=ESTs BE112643 1376307_a_at BI289591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289591 /DB_XREF=gi:14947322 /DB_XREF=UI-R-DK0-cff-g-11-0-UI.s1 /CLONE=UI-R-DK0-cff-g-11-0-UI /FEA=EST /CNT=5 /TID=Rn.18846.1 /TIER=ConsEnd /STK=5 /UG=Rn.18846 /UG_TITLE=ESTs BI289591 RNA binding motif protein 45 Rbm45 266631 NM_153306 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from expression pattern /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred from electronic annotation 1376308_at BF400741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400741 /DB_XREF=gi:11388716 /DB_XREF=UI-R-CA0-bhf-a-02-0-UI.s1 /CLONE=UI-R-CA0-bhf-a-02-0-UI /FEA=EST /CNT=5 /TID=Rn.61564.1 /TIER=ConsEnd /STK=5 /UG=Rn.61564 /UG_TITLE=ESTs BF400741 1376309_at BI296018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296018 /DB_XREF=gi:14960042 /DB_XREF=UI-R-DK0-cfd-d-10-0-UI.s1 /CLONE=UI-R-DK0-cfd-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.50641.1 /TIER=ConsEnd /STK=5 /UG=Rn.50641 /UG_TITLE=ESTs BI296018 family with sequence similarity 193, member A Fam193a 305452 XM_002724985 /// XM_223536 1376310_at BI285686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285686 /DB_XREF=gi:14939582 /DB_XREF=UI-R-CT0s-cas-d-02-0-UI.s1 /CLONE=UI-R-CT0s-cas-d-02-0-UI /FEA=EST /CNT=5 /TID=Rn.46109.1 /TIER=ConsEnd /STK=5 /UG=Rn.46109 /UG_TITLE=ESTs BI285686 1376311_at BM391312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391312 /DB_XREF=gi:18191365 /DB_XREF=UI-R-DY0-ckq-l-03-0-UI.s1 /CLONE=UI-R-DY0-ckq-l-03-0-UI /FEA=EST /CNT=5 /TID=Rn.26736.1 /TIER=ConsEnd /STK=5 /UG=Rn.26736 /UG_TITLE=ESTs BM391312 netrin G1 Ntng1 295382 NM_001106465 0007409 // axonogenesis // not recorded 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0046658 // anchored to plasma membrane // not recorded 0005515 // protein binding // not recorded 1376312_a_at BI284236 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284236 /DB_XREF=gi:14936737 /DB_XREF=UI-R-CX0s-ccn-g-08-0-UI.s1 /CLONE=UI-R-CX0s-ccn-g-08-0-UI /FEA=EST /CNT=5 /TID=Rn.8813.1 /TIER=ConsEnd /STK=5 /UG=Rn.8813 /UG_TITLE=ESTs BI284236 1376313_at BI296463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296463 /DB_XREF=gi:14960910 /DB_XREF=UI-R-CV2-cgr-e-04-0-UI.s1 /CLONE=UI-R-CV2-cgr-e-04-0-UI /FEA=EST /CNT=5 /TID=Rn.27378.1 /TIER=ConsEnd /STK=5 /UG=Rn.27378 /UG_TITLE=ESTs BI296463 two pore segment channel 2 Tpcn2 309139 NM_001107566 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation 1376314_at AI172148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172148 /DB_XREF=gi:4134710 /DB_XREF=EST218143 /CLONE=RMUBV53 /FEA=EST /CNT=5 /TID=Rn.31258.1 /TIER=ConsEnd /STK=5 /UG=Rn.31258 /UG_TITLE=ESTs AI172148 1376315_at BI282297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282297 /DB_XREF=gi:14932925 /DB_XREF=UI-R-CU0s-cby-h-08-0-UI.s1 /CLONE=UI-R-CU0s-cby-h-08-0-UI /FEA=EST /CNT=5 /TID=Rn.18635.1 /TIER=ConsEnd /STK=5 /UG=Rn.18635 /UG_TITLE=ESTs, Moderately similar to YMN1_HUMAN Putative alpha-mannosidase in chromosome 20 precursor (H.sapiens) BI282297 ER degradation enhancer, mannosidase alpha-like 2 Edem2 296304 NM_001004230 0016020 // membrane // inferred from electronic annotation 0004571 // mannosyl-oligosaccharide 1,2-alpha-mannosidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1376316_at AI070593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070593 /DB_XREF=gi:3396844 /DB_XREF=UI-R-C2-mr-f-03-0-UI.s1 /CLONE=UI-R-C2-mr-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.41300.2 /TIER=ConsEnd /STK=1 /UG=Rn.41300 /UG_TITLE=ESTs, Weakly similar to ORC6_HUMAN ORIGIN RECOGNITION COMPLEX SUBUNIT 6 (H.sapiens) AI070593 origin recognition complex, subunit 6 like (yeast) Orc6l 291927 NM_001033690 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded 0000808 // origin recognition complex // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005664 // nuclear origin of replication recognition complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376317_at BI282917 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282917 /DB_XREF=gi:14934157 /DB_XREF=UI-R-CW0s-ccc-h-05-0-UI.s1 /CLONE=UI-R-CW0s-ccc-h-05-0-UI /FEA=EST /CNT=5 /TID=Rn.41300.1 /TIER=ConsEnd /STK=5 /UG=Rn.41300 /UG_TITLE=ESTs, Weakly similar to ORC6_HUMAN ORIGIN RECOGNITION COMPLEX SUBUNIT 6 (H.sapiens) BI282917 origin recognition complex, subunit 6 like (yeast) Orc6l 291927 NM_001033690 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded 0000808 // origin recognition complex // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005664 // nuclear origin of replication recognition complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376318_at BE113300 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113300 /DB_XREF=gi:8505445 /DB_XREF=UI-R-BJ1-awe-c-03-0-UI.s1 /CLONE=UI-R-BJ1-awe-c-03-0-UI /FEA=EST /CNT=5 /TID=Rn.9066.1 /TIER=ConsEnd /STK=5 /UG=Rn.9066 /UG_TITLE=ESTs BE113300 1376319_at BM390322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390322 /DB_XREF=gi:18190375 /DB_XREF=UI-R-CN1-cjq-i-18-0-UI.s1 /CLONE=UI-R-CN1-cjq-i-18-0-UI /FEA=EST /CNT=5 /TID=Rn.16403.1 /TIER=ConsEnd /STK=5 /UG=Rn.16403 /UG_TITLE=ESTs BM390322 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C Sema3c 296787 NM_001106578 0001755 // neural crest cell migration // not recorded /// 0001756 // somitogenesis // not recorded /// 0001974 // blood vessel remodeling // not recorded /// 0003151 // outflow tract morphogenesis // not recorded /// 0003215 // cardiac right ventricle morphogenesis // not recorded /// 0003350 // pulmonary myocardium development // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0009791 // post-embryonic development // not recorded /// 0021915 // neural tube development // not recorded /// 0060174 // limb bud formation // not recorded /// 0060666 // dichotomous subdivision of terminal units involved in salivary gland branching // not recorded 0005615 // extracellular space // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0030215 // semaphorin receptor binding // not recorded 1376320_at BF393051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393051 /DB_XREF=gi:11377911 /DB_XREF=UI-R-CA0-bgp-f-01-0-UI.s1 /CLONE=UI-R-CA0-bgp-f-01-0-UI /FEA=EST /CNT=5 /TID=Rn.8449.1 /TIER=ConsEnd /STK=5 /UG=Rn.8449 /UG_TITLE=ESTs BF393051 1376321_at BI274438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274438 /DB_XREF=gi:14885353 /DB_XREF=UI-R-CW0-bwi-h-07-0-UI.s1 /CLONE=UI-R-CW0-bwi-h-07-0-UI /FEA=EST /CNT=5 /TID=Rn.20892.1 /TIER=ConsEnd /STK=5 /UG=Rn.20892 /UG_TITLE=ESTs, Weakly similar to T20D3.9.p (Caenorhabditis elegans) (C.elegans) BI274438 family with sequence similarity 38, member A Fam38a 361430 NM_001077200 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0033116 // ER-Golgi intermediate compartment membrane // inferred from electronic annotation 1376322_at BF405165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405165 /DB_XREF=gi:11393140 /DB_XREF=UI-R-CA1-biq-f-01-0-UI.s1 /CLONE=UI-R-CA1-biq-f-01-0-UI /FEA=EST /CNT=5 /TID=Rn.50539.1 /TIER=ConsEnd /STK=5 /UG=Rn.50539 /UG_TITLE=ESTs BF405165 1376323_at BM389562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389562 /DB_XREF=gi:18189615 /DB_XREF=UI-R-CN1-cjn-j-08-0-UI.s1 /CLONE=UI-R-CN1-cjn-j-08-0-UI /FEA=EST /CNT=5 /TID=Rn.51196.1 /TIER=ConsEnd /STK=5 /UG=Rn.51196 /UG_TITLE=ESTs BM389562 hypothetical protein LOC687192 LOC687192 687192 XM_002724611 1376324_at BF406329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406329 /DB_XREF=gi:11394304 /DB_XREF=UI-R-CA1-bjf-l-07-0-UI.s1 /CLONE=UI-R-CA1-bjf-l-07-0-UI /FEA=EST /CNT=5 /TID=Rn.21511.1 /TIER=ConsEnd /STK=5 /UG=Rn.21511 /UG_TITLE=ESTs BF406329 1376325_at BM388975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388975 /DB_XREF=gi:18189028 /DB_XREF=UI-R-DZ0-ckn-f-08-0-UI.s1 /CLONE=UI-R-DZ0-ckn-f-08-0-UI /FEA=EST /CNT=5 /TID=Rn.16423.1 /TIER=ConsEnd /STK=5 /UG=Rn.16423 /UG_TITLE=ESTs, Highly similar to B45580 transcription factor R-kappa-B - mouse (M.musculus) BM388975 nuclear factor related to kappa B binding protein Nfrkb 315523 NM_001108133 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0031011 // Ino80 complex // not recorded 0002020 // protease binding // not recorded 1376326_at BF404375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404375 /DB_XREF=gi:11392350 /DB_XREF=UI-R-CA1-bie-d-09-0-UI.s1 /CLONE=UI-R-CA1-bie-d-09-0-UI /FEA=EST /CNT=5 /TID=Rn.62778.1 /TIER=ConsEnd /STK=5 /UG=Rn.62778 /UG_TITLE=ESTs BF404375 1376327_at AI169601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169601 /DB_XREF=gi:3709641 /DB_XREF=EST215486 /CLONE=RKIBV11 /FEA=EST /CNT=5 /TID=Rn.14734.1 /TIER=ConsEnd /STK=5 /UG=Rn.14734 /UG_TITLE=ESTs AI169601 tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator) Tnfrsf14 366518 NM_001015034 0046642 // negative regulation of alpha-beta T cell proliferation // inferred from electronic annotation /// 0046642 // negative regulation of alpha-beta T cell proliferation // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376328_at BI278776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278776 /DB_XREF=gi:14925961 /DB_XREF=UI-R-CZ0-bzb-g-02-0-UI.s1 /CLONE=UI-R-CZ0-bzb-g-02-0-UI /FEA=EST /CNT=5 /TID=Rn.46856.1 /TIER=ConsEnd /STK=5 /UG=Rn.46856 /UG_TITLE=ESTs BI278776 similar to putative protein (5S487) RGD1310819 301351 XM_001057470 /// XM_237064 1376329_at BI295813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295813 /DB_XREF=gi:14959636 /DB_XREF=UI-R-DK0-cfa-h-11-0-UI.s1 /CLONE=UI-R-DK0-cfa-h-11-0-UI /FEA=EST /CNT=5 /TID=Rn.47467.1 /TIER=ConsEnd /STK=5 /UG=Rn.47467 /UG_TITLE=ESTs BI295813 1376330_at BF393046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393046 /DB_XREF=gi:11377906 /DB_XREF=UI-R-CA0-bgp-e-01-0-UI.s1 /CLONE=UI-R-CA0-bgp-e-01-0-UI /FEA=EST /CNT=5 /TID=Rn.62180.1 /TIER=ConsEnd /STK=5 /UG=Rn.62180 /UG_TITLE=ESTs BF393046 1376331_at BI295137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295137 /DB_XREF=gi:14958281 /DB_XREF=UI-R-DK0-ceg-c-04-0-UI.s1 /CLONE=UI-R-DK0-ceg-c-04-0-UI /FEA=EST /CNT=5 /TID=Rn.38226.1 /TIER=ConsEnd /STK=5 /UG=Rn.38226 /UG_TITLE=ESTs BI295137 1376332_at BF396082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396082 /DB_XREF=gi:11381054 /DB_XREF=UI-R-CA1-bcb-b-04-0-UI.s1 /CLONE=UI-R-CA1-bcb-b-04-0-UI /FEA=EST /CNT=5 /TID=Rn.61392.1 /TIER=ConsEnd /STK=5 /UG=Rn.61392 /UG_TITLE=ESTs BF396082 1376333_at BI275800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275800 /DB_XREF=gi:14920072 /DB_XREF=UI-R-CX0-bxg-g-05-0-UI.s1 /CLONE=UI-R-CX0-bxg-g-05-0-UI /FEA=EST /CNT=5 /TID=Rn.18814.1 /TIER=ConsEnd /STK=5 /UG=Rn.18814 /UG_TITLE=ESTs, Weakly similar to T46484 hypothetical protein DKFZp434B055.1 (H.sapiens) BI275800 BTB (POZ) domain containing 1 Btbd1 293060 NM_001011932 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376334_at BF394214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394214 /DB_XREF=gi:11379078 /DB_XREF=UI-R-CA0-bhc-a-04-0-UI.s1 /CLONE=UI-R-CA0-bhc-a-04-0-UI /FEA=EST /CNT=5 /TID=Rn.58227.1 /TIER=ConsEnd /STK=5 /UG=Rn.58227 /UG_TITLE=ESTs BF394214 similar to hypothetical protein FLJ20276 RGD1308101 679640 NM_001114402 0005737 // cytoplasm // inferred from electronic annotation /// 0005814 // centriole // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 1376335_at BI282368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282368 /DB_XREF=gi:14933066 /DB_XREF=UI-R-CU0s-cbz-h-02-0-UI.s1 /CLONE=UI-R-CU0s-cbz-h-02-0-UI /FEA=EST /CNT=5 /TID=Rn.13057.1 /TIER=ConsEnd /STK=5 /UG=Rn.13057 /UG_TITLE=ESTs, Moderately similar to PC4211 hepatocellular carcinoma complicating hemochromatosis protein (H.sapiens) BI282368 tuftelin interacting protein 11 Tfip11 288718 NM_001008291 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0031214 // biomineral tissue development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded /// 0005681 // spliceosomal complex // inferred from sequence or structural similarity /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1376336_at BM392257 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392257 /DB_XREF=gi:18192310 /DB_XREF=UI-R-DO1-ckp-l-03-0-UI.s1 /CLONE=UI-R-DO1-ckp-l-03-0-UI /FEA=EST /CNT=5 /TID=Rn.37151.1 /TIER=ConsEnd /STK=5 /UG=Rn.37151 /UG_TITLE=ESTs BM392257 1376337_at AI170385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170385 /DB_XREF=gi:3710425 /DB_XREF=EST216311 /CLONE=RLUCH65 /FEA=EST /CNT=5 /TID=Rn.9469.1 /TIER=ConsEnd /STK=5 /UG=Rn.9469 /UG_TITLE=ESTs, Weakly similar to JC4666 lymphocyte specific helicase - mouse (M.musculus) AI170385 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 Smarca2 361745 NM_001004446 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016514 // SWI/SNF complex // inferred from electronic annotation /// 0016514 // SWI/SNF complex // not recorded /// 0070603 // SWI/SNF-type complex // not recorded /// 0070603 // SWI/SNF-type complex // inferred from electronic annotation /// 0071564 // npBAF complex // inferred from electronic annotation /// 0071565 // nBAF complex // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation 1376338_at BE111650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111650 /DB_XREF=gi:8503755 /DB_XREF=UI-R-BJ1-avv-c-03-0-UI.s1 /CLONE=UI-R-BJ1-avv-c-03-0-UI /FEA=EST /CNT=5 /TID=Rn.44889.1 /TIER=ConsEnd /STK=5 /UG=Rn.44889 /UG_TITLE=ESTs BE111650 1376339_at BM385270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385270 /DB_XREF=gi:18185323 /DB_XREF=UI-R-EB1-clf-j-04-0-UI.s1 /CLONE=UI-R-EB1-clf-j-04-0-UI /FEA=EST /CNT=5 /TID=Rn.13256.1 /TIER=ConsEnd /STK=5 /UG=Rn.13256 /UG_TITLE=ESTs BM385270 Similar to KIAA1280 protein RGD1560666 317439 XM_001069576 /// XM_228858 0005515 // protein binding // inferred from electronic annotation 1376340_a_at BI282086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282086 /DB_XREF=gi:14932482 /DB_XREF=UI-R-CU0s-cbw-d-06-0-UI.s1 /CLONE=UI-R-CU0s-cbw-d-06-0-UI /FEA=EST /CNT=5 /TID=Rn.18732.1 /TIER=ConsEnd /STK=5 /UG=Rn.18732 /UG_TITLE=ESTs BI282086 tumor suppressing subtransferable candidate 4 Tssc4 361682 NM_001013194 1376341_at BM388895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388895 /DB_XREF=gi:18188948 /DB_XREF=UI-R-DZ0-ckn-b-07-0-UI.s1 /CLONE=UI-R-DZ0-ckn-b-07-0-UI /FEA=EST /CNT=5 /TID=Rn.28603.1 /TIER=ConsEnd /STK=5 /UG=Rn.28603 /UG_TITLE=ESTs BM388895 Ankyrin repeat domain 12 Ankrd12 316775 NM_001108238 1376342_at BI295185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295185 /DB_XREF=gi:14958377 /DB_XREF=UI-R-DK0-ceg-g-07-0-UI.s1 /CLONE=UI-R-DK0-ceg-g-07-0-UI /FEA=EST /CNT=5 /TID=Rn.41306.1 /TIER=ConsEnd /STK=5 /UG=Rn.41306 /UG_TITLE=ESTs BI295185 mesoderm induction early response 1, family member 2 Mier2 362841 NM_001108737 0003677 // DNA binding // inferred from electronic annotation 1376343_at BI296321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296321 /DB_XREF=gi:14960643 /DB_XREF=UI-R-DK0-cez-a-08-0-UI.s1 /CLONE=UI-R-DK0-cez-a-08-0-UI /FEA=EST /CNT=5 /TID=Rn.24260.1 /TIER=ConsEnd /STK=5 /UG=Rn.24260 /UG_TITLE=ESTs BI296321 hypothetical protein LOC361335 LOC361335 361335 XR_085671 /// XR_086085 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1376344_at AI010267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010267 /DB_XREF=gi:3224099 /DB_XREF=EST204718 /CLONE=RLUBW18 /FEA=EST /CNT=5 /TID=Rn.13660.1 /TIER=ConsEnd /STK=5 /UG=Rn.13660 /UG_TITLE=ESTs AI010267 1376345_at BG381734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381734 /DB_XREF=gi:13306206 /DB_XREF=UI-R-CT0-bue-g-11-0-UI.s1 /CLONE=UI-R-CT0-bue-g-11-0-UI /FEA=EST /CNT=5 /TID=Rn.27756.1 /TIER=ConsEnd /STK=5 /UG=Rn.27756 /UG_TITLE=ESTs, Weakly similar to P19 PROTEIN (M.musculus) BG381734 calcyon neuron-specific vesicular protein Caly 192349 NM_001190399 /// NM_138915 0006897 // endocytosis // inferred from electronic annotation /// 0007212 // dopamine receptor signaling pathway // inferred from electronic annotation /// 0045807 // positive regulation of endocytosis // not recorded /// 0045807 // positive regulation of endocytosis // inferred from sequence or structural similarity /// 0045807 // positive regulation of endocytosis // inferred from electronic annotation /// 0048268 // clathrin coat assembly // not recorded /// 0048268 // clathrin coat assembly // inferred from sequence or structural similarity /// 0048268 // clathrin coat assembly // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0031410 // cytoplasmic vesicle // inferred from sequence or structural similarity /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0032051 // clathrin light chain binding // not recorded /// 0032051 // clathrin light chain binding // inferred from sequence or structural similarity /// 0032051 // clathrin light chain binding // inferred from electronic annotation /// 0050780 // dopamine receptor binding // traceable author statement /// 0050780 // dopamine receptor binding // inferred from electronic annotation 1376346_at BM392156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392156 /DB_XREF=gi:18192209 /DB_XREF=UI-R-DO1-ckp-e-20-0-UI.s1 /CLONE=UI-R-DO1-ckp-e-20-0-UI /FEA=EST /CNT=5 /TID=Rn.32962.1 /TIER=ConsEnd /STK=5 /UG=Rn.32962 /UG_TITLE=ESTs BM392156 CDC28 protein kinase regulatory subunit 1B Cks1b 499655 NM_001135749 0007049 // cell cycle // inferred from electronic annotation 0005654 // nucleoplasm // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016538 // cyclin-dependent protein kinase regulator activity // inferred from electronic annotation 1376347_at BM383996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383996 /DB_XREF=gi:18184049 /DB_XREF=UI-R-DM1-ckb-c-02-0-UI.s1 /CLONE=UI-R-DM1-ckb-c-02-0-UI /FEA=EST /CNT=5 /TID=Rn.35612.1 /TIER=ConsEnd /STK=5 /UG=Rn.35612 /UG_TITLE=ESTs, Highly similar to T42697 hypothetical protein DKFZp434N0335.1 (H.sapiens) BM383996 lysine (K)-specific demethylase 5B Kdm5b 304809 NM_001107177 0034720 // histone H3-K4 demethylation // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0034647 // histone demethylase activity (H3-trimethyl-K4 specific) // not recorded /// 0034648 // histone demethylase activity (H3-dimethyl-K4 specific) // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1376348_at BM386015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386015 /DB_XREF=gi:18186068 /DB_XREF=UI-R-DN1-ckf-l-21-0-UI.s1 /CLONE=UI-R-DN1-ckf-l-21-0-UI /FEA=EST /CNT=5 /TID=Rn.39158.1 /TIER=ConsEnd /STK=5 /UG=Rn.39158 /UG_TITLE=ESTs BM386015 pentatricopeptide repeat domain 2 Ptcd2 310025 NM_001107648 0001822 // kidney development // not recorded /// 0001889 // liver development // not recorded /// 0007005 // mitochondrion organization // not recorded /// 0007507 // heart development // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0048747 // muscle fiber development // not recorded /// 0050684 // regulation of mRNA processing // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded 0005739 // mitochondrion // not recorded 1376349_a_at BM391418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391418 /DB_XREF=gi:18191471 /DB_XREF=UI-R-DY0-ckr-a-15-0-UI.s1 /CLONE=UI-R-DY0-ckr-a-15-0-UI /FEA=EST /CNT=5 /TID=Rn.7203.1 /TIER=ConsEnd /STK=5 /UG=Rn.7203 /UG_TITLE=ESTs, Highly similar to solute carrier family 29 (nucleoside transporters), member 2 (Rattus norvegicus) (R.norvegicus) BM391418 solute carrier family 29 (nucleoside transporters), member 2 Slc29a2 65194 NM_031738 0006810 // transport // inferred from electronic annotation /// 0007595 // lactation // inferred from expression pattern /// 0015853 // adenine transport // inferred from direct assay /// 0015854 // guanine transport // inferred from mutant phenotype /// 0015858 // nucleoside transport // inferred from direct assay /// 0015858 // nucleoside transport // not recorded /// 0015858 // nucleoside transport // inferred from electronic annotation /// 0015862 // uridine transport // inferred from mutant phenotype /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0035344 // hypoxanthine transport // inferred from mutant phenotype /// 0035364 // thymine transport // inferred from direct assay /// 0055085 // transmembrane transport // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005337 // nucleoside transmembrane transporter activity // inferred from direct assay /// 0005337 // nucleoside transmembrane transporter activity // not recorded /// 0005337 // nucleoside transmembrane transporter activity // inferred from electronic annotation 1376350_at BF396151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396151 /DB_XREF=gi:11381123 /DB_XREF=UI-R-CA1-bcb-h-05-0-UI.s1 /CLONE=UI-R-CA1-bcb-h-05-0-UI /FEA=EST /CNT=5 /TID=Rn.47356.1 /TIER=ConsEnd /STK=5 /UG=Rn.47356 /UG_TITLE=ESTs BF396151 1376351_at BM383716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383716 /DB_XREF=gi:18183769 /DB_XREF=UI-R-DM1-ckb-i-09-0-UI.s1 /CLONE=UI-R-DM1-ckb-i-09-0-UI /FEA=EST /CNT=5 /TID=Rn.26833.1 /TIER=ConsEnd /STK=5 /UG=Rn.26833 /UG_TITLE=ESTs BM383716 jerky homolog (mouse) Jrk 315073 NM_001104612 0045449 // regulation of transcription // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005840 // ribosome // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded 1376352_at BF394095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394095 /DB_XREF=gi:11378959 /DB_XREF=UI-R-CA0-bgz-b-06-0-UI.s1 /CLONE=UI-R-CA0-bgz-b-06-0-UI /FEA=EST /CNT=5 /TID=Rn.63155.1 /TIER=ConsEnd /STK=5 /UG=Rn.63155 /UG_TITLE=ESTs BF394095 1376353_at BI289883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289883 /DB_XREF=gi:14947917 /DB_XREF=UI-R-DK0-cfp-d-07-0-UI.s1 /CLONE=UI-R-DK0-cfp-d-07-0-UI /FEA=EST /CNT=5 /TID=Rn.51809.1 /TIER=ConsEnd /STK=5 /UG=Rn.51809 /UG_TITLE=ESTs BI289883 ARP5 actin-related protein 5 homolog (yeast) Actr5 362258 NM_001108600 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1376354_a_at BI273698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI273698 /DB_XREF=gi:14883912 /DB_XREF=UI-R-CW0-bvy-a-08-0-UI.s1 /CLONE=UI-R-CW0-bvy-a-08-0-UI /FEA=EST /CNT=4 /TID=Rn.40813.2 /TIER=ConsEnd /STK=4 /UG=Rn.40813 /UG_TITLE=ESTs BI273698 1376355_at BF399639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399639 /DB_XREF=gi:11384649 /DB_XREF=UI-R-CA0-bhu-h-05-0-UI.s2 /CLONE=UI-R-CA0-bhu-h-05-0-UI /FEA=EST /CNT=5 /TID=Rn.59389.1 /TIER=ConsEnd /STK=5 /UG=Rn.59389 /UG_TITLE=ESTs, Weakly similar to C910_HUMAN PROTEIN C9ORF10 (H.sapiens) BF399639 family with sequence similarity 120C FAM120C 317423 XM_001068090 /// XM_228876 1376356_a_at AI070908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070908 /DB_XREF=gi:3397159 /DB_XREF=UI-R-C2-mt-d-03-0-UI.s1 /CLONE=UI-R-C2-mt-d-03-0-UI /FEA=EST /CNT=1 /TID=Rn.47919.2 /TIER=ConsEnd /STK=1 /UG=Rn.47919 /UG_TITLE=ESTs AI070908 bridging integrator 2 Bin2 366988 NM_001012223 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376357_at AA875143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875143 /DB_XREF=gi:4231024 /DB_XREF=UI-R-E0-bu-g-04-0-UI.s2 /CLONE=UI-R-E0-bu-g-04-0-UI /FEA=EST /CNT=5 /TID=Rn.2999.1 /TIER=ConsEnd /STK=5 /UG=Rn.2999 /UG_TITLE=ESTs AA875143 ankyrin repeat and IBR domain containing 1 Ankib1 368062 NM_001134781 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376358_at BF397657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397657 /DB_XREF=gi:11382641 /DB_XREF=UI-R-BS2-bed-b-01-0-UI.s1 /CLONE=UI-R-BS2-bed-b-01-0-UI /FEA=EST /CNT=5 /TID=Rn.62402.1 /TIER=ConsEnd /STK=5 /UG=Rn.62402 /UG_TITLE=ESTs BF397657 1376359_at BG375355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375355 /DB_XREF=gi:13299827 /DB_XREF=UI-R-CV1-bsz-d-11-0-UI.s1 /CLONE=UI-R-CV1-bsz-d-11-0-UI /FEA=EST /CNT=5 /TID=Rn.43695.1 /TIER=ConsEnd /STK=5 /UG=Rn.43695 /UG_TITLE=ESTs BG375355 membrane-spanning 4-domains, subfamily A, member 8A Ms4a8a 361733 NM_001108519 0016021 // integral to membrane // inferred from electronic annotation 1376360_at BF398530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398530 /DB_XREF=gi:11383523 /DB_XREF=UI-R-BS2-bep-h-04-0-UI.s1 /CLONE=UI-R-BS2-bep-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.9009.1 /TIER=ConsEnd /STK=5 /UG=Rn.9009 /UG_TITLE=ESTs BF398530 nescient helix loop helix 1 Nhlh1 289230 NM_001105970 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0030528 // transcription regulator activity // inferred from electronic annotation 1376361_at BF406226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406226 /DB_XREF=gi:11394201 /DB_XREF=UI-R-CA1-bjf-g-14-0-UI.s1 /CLONE=UI-R-CA1-bjf-g-14-0-UI /FEA=EST /CNT=5 /TID=Rn.62487.1 /TIER=ConsEnd /STK=5 /UG=Rn.62487 /UG_TITLE=ESTs BF406226 1376362_at BG380575 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380575 /DB_XREF=gi:13305047 /DB_XREF=UI-R-CT0-bty-h-10-0-UI.s1 /CLONE=UI-R-CT0-bty-h-10-0-UI /FEA=EST /CNT=5 /TID=Rn.25758.1 /TIER=ConsEnd /STK=5 /UG=Rn.25758 /UG_TITLE=ESTs BG380575 neuronal pentraxin receptor Nptxr 81005 NM_030841 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from expression pattern 0000785 // chromatin // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003682 // chromatin binding // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0008029 // pentraxin receptor activity // inferred from direct assay /// 0032403 // protein complex binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1376363_at AI233337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233337 /DB_XREF=gi:3817217 /DB_XREF=EST230025 /CLONE=RKIDD79 /FEA=EST /CNT=5 /TID=Rn.43559.1 /TIER=ConsEnd /STK=5 /UG=Rn.43559 /UG_TITLE=ESTs AI233337 1376364_at BE108778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108778 /DB_XREF=gi:8500883 /DB_XREF=UI-R-BS1-ayy-c-12-0-UI.s1 /CLONE=UI-R-BS1-ayy-c-12-0-UI /FEA=EST /CNT=5 /TID=Rn.51615.1 /TIER=ConsEnd /STK=5 /UG=Rn.51615 /UG_TITLE=ESTs BE108778 1376365_at BF419802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419802 /DB_XREF=gi:11407791 /DB_XREF=UI-R-CA0-bpg-d-07-0-UI.s1 /CLONE=UI-R-CA0-bpg-d-07-0-UI /FEA=EST /CNT=5 /TID=Rn.64467.1 /TIER=ConsEnd /STK=5 /UG=Rn.64467 /UG_TITLE=ESTs BF419802 twinfilin, actin-binding protein, homolog 1 (Drosophila) Twf1 315265 NM_001008521 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0016310 // phosphorylation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded 1376366_at BI278753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278753 /DB_XREF=gi:14925917 /DB_XREF=UI-R-CZ0-bzb-d-11-0-UI.s1 /CLONE=UI-R-CZ0-bzb-d-11-0-UI /FEA=EST /CNT=5 /TID=Rn.41451.1 /TIER=ConsEnd /STK=5 /UG=Rn.41451 /UG_TITLE=ESTs BI278753 SNAP-associated protein Snapap 295217 NM_001025648 /// NM_001170576 0006887 // exocytosis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation 1376367_at BF400644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400644 /DB_XREF=gi:11388619 /DB_XREF=UI-R-CA0-bhd-g-10-0-UI.s1 /CLONE=UI-R-CA0-bhd-g-10-0-UI /FEA=EST /CNT=5 /TID=Rn.59596.1 /TIER=ConsEnd /STK=5 /UG=Rn.59596 /UG_TITLE=ESTs BF400644 1376368_at BE095878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095878 /DB_XREF=gi:8486809 /DB_XREF=UI-R-BU0-apb-f-07-0-UI.s1 /CLONE=UI-R-BU0-apb-f-07-0-UI /FEA=EST /CNT=5 /TID=Rn.19673.1 /TIER=ConsEnd /STK=5 /UG=Rn.19673 /UG_TITLE=ESTs BE095878 CUE domain containing 2 Cuedc2 294009 NM_001079886 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376369_at BM392307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392307 /DB_XREF=gi:18192360 /DB_XREF=UI-R-DO1-ckp-d-22-0-UI.s1 /CLONE=UI-R-DO1-ckp-d-22-0-UI /FEA=EST /CNT=5 /TID=Rn.18273.1 /TIER=ConsEnd /STK=5 /UG=Rn.18273 /UG_TITLE=ESTs, Moderately similar to TAST_HUMAN TROPHININ-ASSOCIATED PROTEIN (H.sapiens) BM392307 trophinin associated protein Troap 300219 XM_001063086 /// XM_238523 1376370_at BI299124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299124 /DB_XREF=gi:14975404 /DB_XREF=UI-R-CV2-chr-d-12-0-UI.s1 /CLONE=UI-R-CV2-chr-d-12-0-UI /FEA=EST /CNT=5 /TID=Rn.68924.1 /TIER=ConsEnd /STK=5 /UG=Rn.68924 /UG_TITLE=ESTs BI299124 1376371_at AW434139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434139 /DB_XREF=gi:6965446 /DB_XREF=UI-R-BJ0p-afd-f-09-0-UI.s1 /CLONE=UI-R-BJ0p-afd-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.43843.1 /TIER=ConsEnd /STK=5 /UG=Rn.43843 /UG_TITLE=ESTs AW434139 1376372_at BI301069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301069 /DB_XREF=gi:14977349 /DB_XREF=UI-R-CV2-cgm-c-11-0-UI.s2 /CLONE=UI-R-CV2-cgm-c-11-0-UI /FEA=EST /CNT=5 /TID=Rn.66192.1 /TIER=ConsEnd /STK=5 /UG=Rn.66192 /UG_TITLE=ESTs BI301069 1376373_at AI012393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012393 /DB_XREF=gi:3226225 /DB_XREF=EST206844 /CLONE=RPLAW58 /FEA=EST /CNT=5 /TID=Rn.17843.1 /TIER=ConsEnd /STK=5 /UG=Rn.17843 /UG_TITLE=ESTs, Weakly similar to JE0343 terf protein - rat (R.norvegicus) AI012393 butyrophilin-like 5 /// butyrophilin-like 7 /// butyrophilin-like 9 Btnl5 /// Btnl7 /// RGD1624210 406159 /// 686048 /// 686977 NM_001166351 /// NM_001166354 /// NM_212488 0050776 // regulation of immune response // traceable author statement 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1376374_at AI406775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406775 /DB_XREF=gi:4250279 /DB_XREF=EST235062 /CLONE=RBRDI76 /FEA=EST /CNT=5 /TID=Rn.28634.1 /TIER=ConsEnd /STK=5 /UG=Rn.28634 /UG_TITLE=ESTs AI406775 1376375_at BG374350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374350 /DB_XREF=gi:13298822 /DB_XREF=UI-R-CV1-bso-c-12-0-UI.s1 /CLONE=UI-R-CV1-bso-c-12-0-UI /FEA=EST /CNT=5 /TID=Rn.66207.1 /TIER=ConsEnd /STK=5 /UG=Rn.66207 /UG_TITLE=ESTs BG374350 1376376_at AI501923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501923 /DB_XREF=gi:4399774 /DB_XREF=UI-R-C0-is-g-09-0-UI.s1 /CLONE=UI-R-C0-is-g-09-0-UI /FEA=EST /CNT=5 /TID=Rn.35581.1 /TIER=ConsEnd /STK=5 /UG=Rn.35581 /UG_TITLE=ESTs AI501923 1376377_at BF398599 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398599 /DB_XREF=gi:11383593 /DB_XREF=UI-R-BS2-beq-f-10-0-UI.s1 /CLONE=UI-R-BS2-beq-f-10-0-UI /FEA=EST /CNT=5 /TID=Rn.9010.1 /TIER=ConsEnd /STK=5 /UG=Rn.9010 /UG_TITLE=ESTs BF398599 diaphanous homolog 3 (Drosophila) Diaph3 290396 XM_001074393 /// XM_002728299 /// XM_224392 0007283 // spermatogenesis // inferred from expression pattern /// 0016043 // cellular component organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from electronic annotation 1376378_at BF393577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393577 /DB_XREF=gi:11378439 /DB_XREF=UI-R-CA0-bgd-e-05-0-UI.s1 /CLONE=UI-R-CA0-bgd-e-05-0-UI /FEA=EST /CNT=5 /TID=Rn.58095.1 /TIER=ConsEnd /STK=5 /UG=Rn.58095 /UG_TITLE=ESTs BF393577 1376379_a_at AW252141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252141 /DB_XREF=gi:6595732 /DB_XREF=UI-R-BJ0-aee-f-10-0-UI.s1 /CLONE=UI-R-BJ0-aee-f-10-0-UI /FEA=EST /CNT=5 /TID=Rn.41221.1 /TIER=ConsEnd /STK=5 /UG=Rn.41221 /UG_TITLE=ESTs AW252141 similar to RIKEN cDNA 2310004I24 gene RGD1309906 287406 NM_001009246 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047631 // ADP-ribose diphosphatase activity // inferred from electronic annotation /// 0047734 // CDP-glycerol diphosphatase activity // inferred from electronic annotation 1376380_at BF398757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398757 /DB_XREF=gi:11383721 /DB_XREF=UI-R-BS2-bes-b-03-0-UI.s1 /CLONE=UI-R-BS2-bes-b-03-0-UI /FEA=EST /CNT=5 /TID=Rn.63627.1 /TIER=ConsEnd /STK=5 /UG=Rn.63627 /UG_TITLE=ESTs BF398757 1376381_at AW252094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252094 /DB_XREF=gi:6595685 /DB_XREF=UI-R-BJ0-aee-b-03-0-UI.s1 /CLONE=UI-R-BJ0-aee-b-03-0-UI /FEA=EST /CNT=5 /TID=Rn.33372.1 /TIER=ConsEnd /STK=5 /UG=Rn.33372 /UG_TITLE=ESTs AW252094 XK, Kell blood group complex subunit-related family, member 5 Xkr5 497083 NM_001012228 1376382_at BE100018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100018 /DB_XREF=gi:8491903 /DB_XREF=UI-R-BJ1-atr-g-05-0-UI.s1 /CLONE=UI-R-BJ1-atr-g-05-0-UI /FEA=EST /CNT=5 /TID=Rn.44029.1 /TIER=ConsEnd /STK=5 /UG=Rn.44029 /UG_TITLE=ESTs, Moderately similar to B3G7_HUMAN BETA-1,3-GALACTOSYLTRANSFERASE 7 (BETA-1,3-GALTASE 7) (BETA3GAL-T7) (B3GAL-T7) (UDP-GALACTOSE:BETA-N-ACETYLGLUCOSAMINE BETA-1,3-GALACTOSYLTRANSFERASE 7) (UDP-GAL:BETA-GLCNAC BETA-1,3-GALACTOSYLTRANSFERASE 7) (BETA-3-GX-T7) (H.sapiens) BE100018 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 B3gnt2 305571 NM_001107240 0006486 // protein glycosylation // inferred from electronic annotation /// 0006486 // protein glycosylation // not recorded /// 0007411 // axon guidance // not recorded /// 0007608 // sensory perception of smell // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008378 // galactosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1376383_at BF403938 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403938 /DB_XREF=gi:11391913 /DB_XREF=UI-R-CA1-bjd-j-21-0-UI.s1 /CLONE=UI-R-CA1-bjd-j-21-0-UI /FEA=EST /CNT=5 /TID=Rn.62167.1 /TIER=ConsEnd /STK=5 /UG=Rn.62167 /UG_TITLE=ESTs BF403938 1376384_at BE111118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111118 /DB_XREF=gi:8503223 /DB_XREF=UI-R-BJ1-auz-g-12-0-UI.s1 /CLONE=UI-R-BJ1-auz-g-12-0-UI /FEA=EST /CNT=5 /TID=Rn.65563.1 /TIER=ConsEnd /STK=5 /UG=Rn.65563 /UG_TITLE=ESTs, Weakly similar to DUAL SPECIFICITY PROTEIN PHOSPHATASE 6 (R.norvegicus) BE111118 dual specificity phosphatase 19 Dusp19 311151 NM_001107739 0000188 // inactivation of MAPK activity // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0007254 // JNK cascade // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // not recorded /// 0008330 // protein tyrosine/threonine phosphatase activity // not recorded /// 0008579 // JUN kinase phosphatase activity // not recorded /// 0016791 // phosphatase activity // inferred from electronic annotation 1376385_at BF400806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400806 /DB_XREF=gi:11388821 /DB_XREF=UI-R-CA0-bhg-e-02-0-UI.s1 /CLONE=UI-R-CA0-bhg-e-02-0-UI /FEA=EST /CNT=5 /TID=Rn.61312.1 /TIER=ConsEnd /STK=5 /UG=Rn.61312 /UG_TITLE=ESTs BF400806 1376386_at BF393799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393799 /DB_XREF=gi:11378662 /DB_XREF=UI-R-CA0-bgv-a-12-0-UI.s1 /CLONE=UI-R-CA0-bgv-a-12-0-UI /FEA=EST /CNT=5 /TID=Rn.62758.1 /TIER=ConsEnd /STK=5 /UG=Rn.62758 /UG_TITLE=ESTs BF393799 1376387_at BF416283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416283 /DB_XREF=gi:11404272 /DB_XREF=UI-R-CA0-bkr-f-04-0-UI.s1 /CLONE=UI-R-CA0-bkr-f-04-0-UI /FEA=EST /CNT=5 /TID=Rn.62975.1 /TIER=ConsEnd /STK=5 /UG=Rn.62975 /UG_TITLE=ESTs BF416283 1376388_at BF413248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413248 /DB_XREF=gi:11401237 /DB_XREF=UI-R-BT1-bny-e-12-0-UI.s1 /CLONE=UI-R-BT1-bny-e-12-0-UI /FEA=EST /CNT=5 /TID=Rn.62287.1 /TIER=ConsEnd /STK=5 /UG=Rn.62287 /UG_TITLE=ESTs BF413248 1376389_at BF400045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400045 /DB_XREF=gi:11385020 /DB_XREF=UI-R-CA1-bia-e-12-0-UI.s1 /CLONE=UI-R-CA1-bia-e-12-0-UI /FEA=EST /CNT=5 /TID=Rn.64382.1 /TIER=ConsEnd /STK=5 /UG=Rn.64382 /UG_TITLE=ESTs BF400045 1376390_at BF395317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395317 /DB_XREF=gi:11380282 /DB_XREF=UI-R-CM0-bjq-a-06-0-UI.s1 /CLONE=UI-R-CM0-bjq-a-06-0-UI /FEA=EST /CNT=5 /TID=Rn.12199.1 /TIER=ConsEnd /STK=5 /UG=Rn.12199 /UG_TITLE=ESTs, Weakly similar to FCEB RAT HIGH AFFINITY IMMUNOGLOBULIN EPSILON RECEPTOR BETA-SUBUNIT (R.norvegicus) BF395317 membrane-spanning 4-domains, subfamily A, member 11 Ms4a11 361735 XM_001075502 /// XM_342028 0016021 // integral to membrane // inferred from electronic annotation 1376391_at BF402709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402709 /DB_XREF=gi:11390684 /DB_XREF=UI-R-CA0-bho-f-11-0-UI.s1 /CLONE=UI-R-CA0-bho-f-11-0-UI /FEA=EST /CNT=5 /TID=Rn.62798.1 /TIER=ConsEnd /STK=5 /UG=Rn.62798 /UG_TITLE=ESTs, Moderately similar to JC4980 plexin 1 precursor - mouse (M.musculus) BF402709 1376392_at BF419405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419405 /DB_XREF=gi:11407394 /DB_XREF=UI-R-CA1-bnr-c-08-0-UI.s1 /CLONE=UI-R-CA1-bnr-c-08-0-UI /FEA=EST /CNT=5 /TID=Rn.64363.1 /TIER=ConsEnd /STK=5 /UG=Rn.64363 /UG_TITLE=ESTs BF419405 1376393_at BI296409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296409 /DB_XREF=gi:14960804 /DB_XREF=UI-R-CV2-cgq-g-11-0-UI.s1 /CLONE=UI-R-CV2-cgq-g-11-0-UI /FEA=EST /CNT=5 /TID=Rn.79911.1 /TIER=ConsEnd /STK=5 /UG=Rn.79911 /UG_TITLE=ESTs BI296409 1376394_at AW915454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915454 /DB_XREF=gi:8081150 /DB_XREF=EST346758 /CLONE=RGICV58 /FEA=EST /CNT=5 /TID=Rn.14822.1 /TIER=ConsEnd /STK=5 /UG=Rn.14822 /UG_TITLE=ESTs AW915454 C-type lectin domain family 9, member a Clec9a 502901 NM_001109354 0005488 // binding // inferred from electronic annotation 1376395_at AI145359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145359 /DB_XREF=gi:3667152 /DB_XREF=UI-R-BT0-qe-a-05-0-UI.s1 /CLONE=UI-R-BT0-qe-a-05-0-UI /FEA=EST /CNT=5 /TID=Rn.15761.1 /TIER=ConsEnd /STK=5 /UG=Rn.15761 /UG_TITLE=ESTs AI145359 1376396_a_at BI290799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290799 /DB_XREF=gi:14949715 /DB_XREF=UI-R-DK0-cga-e-08-0-UI.s1 /CLONE=UI-R-DK0-cga-e-08-0-UI /FEA=EST /CNT=5 /TID=Rn.53888.1 /TIER=ConsEnd /STK=5 /UG=Rn.53888 /UG_TITLE=ESTs, Weakly similar to T17305 hypothetical protein DKFZp566E164.1 (H.sapiens) BI290799 rCG47836-like LOC100362120 100362120 XM_002725733 /// XM_002728827 1376397_at BF410485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410485 /DB_XREF=gi:11398460 /DB_XREF=UI-R-CA0-bme-c-01-0-UI.s1 /CLONE=UI-R-CA0-bme-c-01-0-UI /FEA=EST /CNT=5 /TID=Rn.64380.1 /TIER=ConsEnd /STK=5 /UG=Rn.64380 /UG_TITLE=ESTs BF410485 1376398_at BF417784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417784 /DB_XREF=gi:11405773 /DB_XREF=UI-R-CN0-blx-b-05-0-UI.s1 /CLONE=UI-R-CN0-blx-b-05-0-UI /FEA=EST /CNT=5 /TID=Rn.7699.1 /TIER=ConsEnd /STK=5 /UG=Rn.7699 /UG_TITLE=ESTs BF417784 1376399_at BI296449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296449 /DB_XREF=gi:14960883 /DB_XREF=UI-R-CV2-cgr-c-12-0-UI.s1 /CLONE=UI-R-CV2-cgr-c-12-0-UI /FEA=EST /CNT=5 /TID=Rn.79817.1 /TIER=ConsEnd /STK=5 /UG=Rn.79817 /UG_TITLE=ESTs BI296449 1376400_at BG380445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380445 /DB_XREF=gi:13304917 /DB_XREF=UI-R-CT0-btx-d-02-0-UI.s1 /CLONE=UI-R-CT0-btx-d-02-0-UI /FEA=EST /CNT=5 /TID=Rn.2501.1 /TIER=ConsEnd /STK=5 /UG=Rn.2501 /UG_TITLE=ESTs, Weakly similar to F49D11.9.p (Caenorhabditis elegans) (C.elegans) BG380445 1376401_at AI412569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412569 /DB_XREF=gi:4256073 /DB_XREF=EST240868 /CLONE=RBRDK01 /FEA=EST /CNT=5 /TID=Rn.7709.1 /TIER=ConsEnd /STK=5 /UG=Rn.7709 /UG_TITLE=ESTs AI412569 1376402_a_at BF557338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557338 /DB_XREF=gi:11667068 /DB_XREF=UI-R-A1-ey-g-06-0-UI.r1 /CLONE=UI-R-A1-ey-g-06-0-UI /FEA=EST /CNT=1 /TID=Rn.8804.2 /TIER=ConsEnd /STK=0 /UG=Rn.8804 /UG_TITLE=ESTs BF557338 RAS-like, family 10, member B Rasl10b 303382 NM_001191648 /// XM_001081057 /// XM_002727785 /// XM_220782 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1376403_at BE109059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109059 /DB_XREF=gi:8501164 /DB_XREF=UI-R-BS1-azc-e-04-0-UI.s1 /CLONE=UI-R-BS1-azc-e-04-0-UI /FEA=EST /CNT=5 /TID=Rn.51663.1 /TIER=ConsEnd /STK=5 /UG=Rn.51663 /UG_TITLE=ESTs BE109059 1376404_at AI639317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639317 /DB_XREF=gi:4700351 /DB_XREF=rx04857s /CLONE=rx04857 /FEA=EST /CNT=5 /TID=Rn.43513.1 /TIER=ConsEnd /STK=5 /UG=Rn.43513 /UG_TITLE=ESTs AI639317 1376405_at BF404837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404837 /DB_XREF=gi:11392812 /DB_XREF=UI-R-CA1-bic-c-08-0-UI.s1 /CLONE=UI-R-CA1-bic-c-08-0-UI /FEA=EST /CNT=5 /TID=Rn.61523.1 /TIER=ConsEnd /STK=5 /UG=Rn.61523 /UG_TITLE=ESTs BF404837 1376406_at BI300322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300322 /DB_XREF=gi:14976602 /DB_XREF=UI-R-CV2-cid-f-05-0-UI.s1 /CLONE=UI-R-CV2-cid-f-05-0-UI /FEA=EST /CNT=5 /TID=Rn.66175.1 /TIER=ConsEnd /STK=5 /UG=Rn.66175 /UG_TITLE=ESTs, Moderately similar to T46394 hypothetical protein DKFZp434H0820.1 (H.sapiens) BI300322 1376407_a_at BI289882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289882 /DB_XREF=gi:14947915 /DB_XREF=UI-R-DK0-cfp-d-06-0-UI.s1 /CLONE=UI-R-DK0-cfp-d-06-0-UI /FEA=EST /CNT=5 /TID=Rn.25010.1 /TIER=ConsEnd /STK=5 /UG=Rn.25010 /UG_TITLE=ESTs, Highly similar to LSM7_HUMAN U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7 (H.sapiens) BI289882 LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) Lsm7 362829 NM_001108732 0005515 // protein binding // not recorded 1376408_at BF418111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418111 /DB_XREF=gi:11406100 /DB_XREF=UI-R-CA0-blz-f-04-0-UI.s1 /CLONE=UI-R-CA0-blz-f-04-0-UI /FEA=EST /CNT=5 /TID=Rn.52964.1 /TIER=ConsEnd /STK=5 /UG=Rn.52964 /UG_TITLE=ESTs, Highly similar to Y020_HUMAN HYPOTHETICAL PROTEIN KIAA0020 (H.sapiens) BF418111 hypothetical protein LOC499339 LOC499339 499339 NM_001025036 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1376409_at AI176677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176677 /DB_XREF=gi:3727315 /DB_XREF=EST220270 /CLONE=ROVBV44 /FEA=EST /CNT=5 /TID=Rn.24441.1 /TIER=ConsEnd /STK=5 /UG=Rn.24441 /UG_TITLE=ESTs AI176677 RAB23, member RAS oncogene family Rab23 367242 NM_001109005 0007165 // signal transduction // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0008589 // regulation of smoothened signaling pathway // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0021513 // spinal cord dorsal/ventral patterning // not recorded /// 0042733 // embryonic digit morphogenesis // not recorded /// 0045861 // negative regulation of proteolysis // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1376410_at BI291814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291814 /DB_XREF=gi:14951723 /DB_XREF=UI-R-DN0-cit-h-22-0-UI.s1 /CLONE=UI-R-DN0-cit-h-22-0-UI /FEA=EST /CNT=5 /TID=Rn.7971.1 /TIER=ConsEnd /STK=5 /UG=Rn.7971 /UG_TITLE=ESTs BI291814 matrix metallopeptidase 17 Mmp17 288626 NM_001105925 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376411_at BE107062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107062 /DB_XREF=gi:8499167 /DB_XREF=UI-R-BS1-ayp-d-07-0-UI.s1 /CLONE=UI-R-BS1-ayp-d-07-0-UI /FEA=EST /CNT=5 /TID=Rn.30700.1 /TIER=ConsEnd /STK=5 /UG=Rn.30700 /UG_TITLE=ESTs BE107062 ADP-ribosylation factor-like 13B Arl13b 304037 NM_001107101 0007368 // determination of left/right symmetry // not recorded /// 0009953 // dorsal/ventral pattern formation // not recorded 0005525 // GTP binding // inferred from electronic annotation 1376412_at BF410759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410759 /DB_XREF=gi:11398734 /DB_XREF=UI-R-CA0-bmc-f-06-0-UI.s1 /CLONE=UI-R-CA0-bmc-f-06-0-UI /FEA=EST /CNT=5 /TID=Rn.50887.1 /TIER=ConsEnd /STK=5 /UG=Rn.50887 /UG_TITLE=ESTs BF410759 1376413_at BF410366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410366 /DB_XREF=gi:11398341 /DB_XREF=UI-R-CA1-bjw-f-07-0-UI.s1 /CLONE=UI-R-CA1-bjw-f-07-0-UI /FEA=EST /CNT=5 /TID=Rn.62456.1 /TIER=ConsEnd /STK=5 /UG=Rn.62456 /UG_TITLE=ESTs BF410366 1376414_x_at BE109634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109634 /DB_XREF=gi:8501739 /DB_XREF=UI-R-BJ1-avq-d-07-0-UI.s1 /CLONE=UI-R-BJ1-avq-d-07-0-UI /FEA=EST /CNT=5 /TID=Rn.24931.1 /TIER=ConsEnd /STK=5 /UG=Rn.24931 /UG_TITLE=ESTs BE109634 similar to KIAA0913 protein RGD1309414 361004 XM_001057186 /// XM_002725030 /// XM_002728151 /// XM_341279 0008270 // zinc ion binding // inferred from electronic annotation 1376415_at BE114114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114114 /DB_XREF=gi:8506219 /DB_XREF=UI-R-BJ1-awj-c-07-0-UI.s1 /CLONE=UI-R-BJ1-awj-c-07-0-UI /FEA=EST /CNT=5 /TID=Rn.38014.1 /TIER=ConsEnd /STK=5 /UG=Rn.38014 /UG_TITLE=ESTs BE114114 mitochondrial ribosome recycling factor Mrrf 311903 NM_001008354 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0032790 // ribosome disassembly // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1376416_at BI296287 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296287 /DB_XREF=gi:14960581 /DB_XREF=UI-R-DK0-cey-f-01-0-UI.s1 /CLONE=UI-R-DK0-cey-f-01-0-UI /FEA=EST /CNT=5 /TID=Rn.15684.1 /TIER=ConsEnd /STK=5 /UG=Rn.15684 /UG_TITLE=ESTs BI296287 trafficking protein particle complex 9 Trappc9 315059 NM_001034156 /// XM_001068491 /// XM_235402 1376417_at BI300887 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300887 /DB_XREF=gi:14977167 /DB_XREF=UI-R-CV2-cil-b-06-0-UI.s1 /CLONE=UI-R-CV2-cil-b-06-0-UI /FEA=EST /CNT=5 /TID=Rn.56562.1 /TIER=ConsEnd /STK=5 /UG=Rn.56562 /UG_TITLE=ESTs BI300887 1376418_a_at AA859497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859497 /DB_XREF=gi:4230043 /DB_XREF=UI-R-E0-bv-g-09-0-UI.s1 /CLONE=UI-R-E0-bv-g-09-0-UI /FEA=EST /CNT=1 /TID=Rn.238.2 /TIER=ConsEnd /STK=0 /UG=Rn.238 /UG_TITLE=ESTs AA859497 isoleucyl-tRNA synthetase Iars 306804 NM_001100572 0006412 // translation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004822 // isoleucine-tRNA ligase activity // inferred from electronic annotation /// 0004822 // isoleucine-tRNA ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1376419_at BE116226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116226 /DB_XREF=gi:8508331 /DB_XREF=UI-R-BS1-aya-h-04-0-UI.s1 /CLONE=UI-R-BS1-aya-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.26899.1 /TIER=ConsEnd /STK=5 /UG=Rn.26899 /UG_TITLE=ESTs BE116226 1376420_at BF419551 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419551 /DB_XREF=gi:11407540 /DB_XREF=UI-R-CA0-bpd-c-11-0-UI.s1 /CLONE=UI-R-CA0-bpd-c-11-0-UI /FEA=EST /CNT=5 /TID=Rn.41401.1 /TIER=ConsEnd /STK=5 /UG=Rn.41401 /UG_TITLE=ESTs BF419551 proline-rich transmembrane protein 4 Prrt4 500059 NM_001109226 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1376421_at BI278838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278838 /DB_XREF=gi:14926073 /DB_XREF=UI-R-CX0-bwx-e-03-0-UI.s1 /CLONE=UI-R-CX0-bwx-e-03-0-UI /FEA=EST /CNT=5 /TID=Rn.20759.1 /TIER=ConsEnd /STK=5 /UG=Rn.20759 /UG_TITLE=ESTs BI278838 1376422_at AI170987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170987 /DB_XREF=gi:3711027 /DB_XREF=EST216931 /CLONE=RMUBE50 /FEA=EST /CNT=5 /TID=Rn.24285.1 /TIER=ConsEnd /STK=5 /UG=Rn.24285 /UG_TITLE=ESTs AI170987 1376423_at BG381739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381739 /DB_XREF=gi:13306211 /DB_XREF=UI-R-CT0-bue-h-09-0-UI.s1 /CLONE=UI-R-CT0-bue-h-09-0-UI /FEA=EST /CNT=5 /TID=Rn.50190.1 /TIER=ConsEnd /STK=5 /UG=Rn.50190 /UG_TITLE=ESTs BG381739 F-box and leucine-rich repeat protein 19 Fbxl19 308999 NM_001107552 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376424_at BF412664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412664 /DB_XREF=gi:11400653 /DB_XREF=UI-R-BT1-bnq-f-02-0-UI.s1 /CLONE=UI-R-BT1-bnq-f-02-0-UI /FEA=EST /CNT=5 /TID=Rn.28067.1 /TIER=ConsEnd /STK=5 /UG=Rn.28067 /UG_TITLE=ESTs BF412664 1376425_at BF420705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420705 /DB_XREF=gi:11408694 /DB_XREF=UI-R-BJ2-bpz-b-04-0-UI.s1 /CLONE=UI-R-BJ2-bpz-b-04-0-UI /FEA=EST /CNT=5 /TID=Rn.28189.1 /TIER=ConsEnd /STK=5 /UG=Rn.28189 /UG_TITLE=ESTs BF420705 Transforming growth factor, beta 2 Tgfb2 81809 NM_031131 0000902 // cell morphogenesis // not recorded /// 0000902 // cell morphogenesis // inferred from sequence or structural similarity /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001502 // cartilage condensation // inferred from electronic annotation /// 0001502 // cartilage condensation // not recorded /// 0001558 // regulation of cell growth // traceable author statement /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001654 // eye development // not recorded /// 0001654 // eye development // inferred from sequence or structural similarity /// 0001666 // response to hypoxia // not recorded /// 0001822 // kidney development // inferred from expression pattern /// 0001837 // epithelial to mesenchymal transition // not recorded /// 0001942 // hair follicle development // not recorded /// 0001942 // hair follicle development // inferred from sequence or structural similarity /// 0001942 // hair follicle development // inferred from electronic annotation /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0001974 // blood vessel remodeling // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006924 // activation-induced cell death of T cells // inferred from electronic annotation /// 0006924 // activation-induced cell death of T cells // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007184 // SMAD protein nuclear translocation // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007435 // salivary gland morphogenesis // not recorded /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from sequence or structural similarity /// 0007507 // heart development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from expression pattern /// 0007565 // female pregnancy // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008219 // cell death // not recorded /// 0008219 // cell death // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0008347 // glial cell migration // not recorded /// 0009314 // response to radiation // inferred from expression pattern /// 0009409 // response to cold // inferred from expression pattern /// 0009611 // response to wounding // not recorded /// 0010002 // cardioblast differentiation // not recorded /// 0010002 // cardioblast differentiation // inferred from sequence or structural similarity /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010634 // positive regulation of epithelial cell migration // not recorded /// 0010693 // negative regulation of alkaline phosphatase activity // not recorded /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0016049 // cell growth // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0022601 // menstrual cycle phase // not recorded /// 0030097 // hemopoiesis // not recorded /// 0030097 // hemopoiesis // inferred from sequence or structural similarity /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030199 // collagen fibril organization // not recorded /// 0030307 // positive regulation of cell growth // not recorded /// 0030307 // positive regulation of cell growth // inferred from sequence or structural similarity /// 0030308 // negative regulation of cell growth // not recorded /// 0030324 // lung development // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030593 // neutrophil chemotaxis // inferred from sequence or structural similarity /// 0030878 // thyroid gland development // inferred from expression pattern /// 0030902 // hindbrain development // inferred from expression pattern /// 0031016 // pancreas development // inferred from expression pattern /// 0031069 // hair follicle morphogenesis // not recorded /// 0031069 // hair follicle morphogenesis // inferred from sequence or structural similarity /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0032147 // activation of protein kinase activity // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032570 // response to progesterone stimulus // not recorded /// 0032874 // positive regulation of stress-activated MAPK cascade // not recorded /// 0032909 // regulation of transforming growth factor-beta2 production // not recorded /// 0033280 // response to vitamin D // inferred from expression pattern /// 0033630 // positive regulation of cell adhesion mediated by integrin // not recorded /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0034616 // response to laminar fluid shear stress // inferred from expression pattern /// 0040007 // growth // inferred from electronic annotation /// 0042060 // wound healing // inferred from expression pattern /// 0042060 // wound healing // inferred from mutant phenotype /// 0042060 // wound healing // inferred from sequence or structural similarity /// 0042127 // regulation of cell proliferation // traceable author statement /// 0042416 // dopamine biosynthetic process // not recorded /// 0042416 // dopamine biosynthetic process // inferred from sequence or structural similarity /// 0042416 // dopamine biosynthetic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042637 // catagen // not recorded /// 0042637 // catagen // inferred from sequence or structural similarity /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0043525 // positive regulation of neuron apoptosis // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from sequence or structural similarity /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0045216 // cell-cell junction organization // not recorded /// 0045726 // positive regulation of integrin biosynthetic process // not recorded /// 0045778 // positive regulation of ossification // not recorded /// 0045787 // positive regulation of cell cycle // not recorded /// 0045787 // positive regulation of cell cycle // inferred from sequence or structural similarity /// 0045787 // positive regulation of cell cycle // inferred from electronic annotation /// 0045823 // positive regulation of heart contraction // not recorded /// 0045823 // positive regulation of heart contraction // inferred from sequence or structural similarity /// 0048103 // somatic stem cell division // not recorded /// 0048103 // somatic stem cell division // inferred from sequence or structural similarity /// 0048103 // somatic stem cell division // inferred from electronic annotation /// 0048565 // digestive tract development // inferred from expression pattern /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0048666 // neuron development // not recorded /// 0048666 // neuron development // inferred from sequence or structural similarity /// 0048666 // neuron development // inferred from electronic annotation /// 0048702 // embryonic neurocranium morphogenesis // inferred from direct assay /// 0048839 // inner ear development // inferred from expression pattern /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050714 // positive regulation of protein secretion // not recorded /// 0050777 // negative regulation of immune response // inferred from direct assay /// 0050778 // positive regulation of immune response // inferred from sequence or structural similarity /// 0051280 // negative regulation of release of sequestered calcium ion into cytosol // inferred from direct assay /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0051795 // positive regulation of catagen // not recorded /// 0051795 // positive regulation of catagen // inferred from sequence or structural similarity /// 0051891 // positive regulation of cardioblast differentiation // not recorded /// 0051891 // positive regulation of cardioblast differentiation // inferred from sequence or structural similarity /// 0060038 // cardiac muscle cell proliferation // not recorded /// 0060038 // cardiac muscle cell proliferation // inferred from sequence or structural similarity /// 0060317 // cardiac epithelial to mesenchymal transition // not recorded /// 0060364 // frontal suture morphogenesis // inferred from expression pattern /// 0060389 // pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0060389 // pathway-restricted SMAD protein phosphorylation // not recorded 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region // inferred from electronic annotation /// 0005604 // basement membrane // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from sequence or structural similarity /// 0030424 // axon // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded /// 0031093 // platelet alpha granule lumen // not recorded /// 0043025 // neuronal cell body // not recorded /// 0043025 // neuronal cell body // inferred from sequence or structural similarity /// 0043025 // neuronal cell body // inferred from electronic annotation 0001540 // beta-amyloid binding // not recorded /// 0001540 // beta-amyloid binding // inferred from sequence or structural similarity /// 0004702 // receptor signaling protein serine/threonine kinase activity // not recorded /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from sequence or structural similarity /// 0005114 // type II transforming growth factor beta receptor binding // not recorded /// 0005160 // transforming growth factor beta receptor binding // not recorded /// 0005160 // transforming growth factor beta receptor binding // inferred from sequence or structural similarity /// 0005160 // transforming growth factor beta receptor binding // traceable author statement /// 0005160 // transforming growth factor beta receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from mutant phenotype 1376426_at BG372438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372438 /DB_XREF=gi:13268975 /DB_XREF=UI-R-CV1-bsc-g-04-0-UI.s1 /CLONE=UI-R-CV1-bsc-g-04-0-UI /FEA=EST /CNT=5 /TID=Rn.66920.1 /TIER=ConsEnd /STK=5 /UG=Rn.66920 /UG_TITLE=ESTs BG372438 1376427_a_at AI029729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029729 /DB_XREF=gi:4300567 /DB_XREF=UI-R-C0-jg-b-05-0-UI.s1 /CLONE=UI-R-C0-jg-b-05-0-UI /FEA=EST /CNT=5 /TID=Rn.17101.1 /TIER=ConsEnd /STK=5 /UG=Rn.17101 /UG_TITLE=ESTs, Highly similar to GCSP_HUMAN GLYCINE DEHYDROGENASE (H.sapiens) AI029729 glycine dehydrogenase (decarboxylating) Gldc 309312 NM_001107583 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006544 // glycine metabolic process // inferred from electronic annotation /// 0019464 // glycine decarboxylation via glycine cleavage system // inferred from direct assay /// 0019464 // glycine decarboxylation via glycine cleavage system // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005960 // glycine cleavage complex // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004375 // glycine dehydrogenase (decarboxylating) activity // inferred from direct assay /// 0004375 // glycine dehydrogenase (decarboxylating) activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0016594 // glycine binding // inferred from direct assay /// 0016829 // lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from direct assay /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from direct assay 1376428_at BF412631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412631 /DB_XREF=gi:11400620 /DB_XREF=UI-R-BT1-bnq-b-04-0-UI.s1 /CLONE=UI-R-BT1-bnq-b-04-0-UI /FEA=EST /CNT=5 /TID=Rn.51828.1 /TIER=ConsEnd /STK=5 /UG=Rn.51828 /UG_TITLE=ESTs BF412631 1376429_at BF396684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396684 /DB_XREF=gi:11381664 /DB_XREF=UI-R-BS2-bea-h-10-0-UI.s1 /CLONE=UI-R-BS2-bea-h-10-0-UI /FEA=EST /CNT=5 /TID=Rn.63585.1 /TIER=ConsEnd /STK=5 /UG=Rn.63585 /UG_TITLE=ESTs, Weakly similar to ACTA_HUMAN ACTIN, AORTIC SMOOTH MUSCLE (R.norvegicus) BF396684 actin-like 7b Actl7b 313183 NM_001025417 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1376430_at AA925921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925921 /DB_XREF=gi:4237112 /DB_XREF=UI-R-A1-es-g-07-0-UI.s1 /CLONE=UI-R-A1-es-g-07-0-UI /FEA=EST /CNT=5 /TID=Rn.7762.2 /TIER=ConsEnd /STK=5 /UG=Rn.7762 /UG_TITLE=ESTs AA925921 1376431_at BM387357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387357 /DB_XREF=gi:18187410 /DB_XREF=UI-R-CN1-cjj-e-15-0-UI.s1 /CLONE=UI-R-CN1-cjj-e-15-0-UI /FEA=EST /CNT=5 /TID=Rn.12585.1 /TIER=ConsEnd /STK=5 /UG=Rn.12585 /UG_TITLE=ESTs BM387357 SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae) Sil1 291673 NM_199376 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1376432_at BM383785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383785 /DB_XREF=gi:18183838 /DB_XREF=UI-R-DM1-ckb-h-11-0-UI.s1 /CLONE=UI-R-DM1-ckb-h-11-0-UI /FEA=EST /CNT=5 /TID=Rn.22399.1 /TIER=ConsEnd /STK=5 /UG=Rn.22399 /UG_TITLE=ESTs BM383785 zinc finger, AN1-type domain 3 Zfand3 361816 NM_001012175 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376433_at BF400033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400033 /DB_XREF=gi:11385008 /DB_XREF=UI-R-CA1-bia-d-11-0-UI.s1 /CLONE=UI-R-CA1-bia-d-11-0-UI /FEA=EST /CNT=5 /TID=Rn.62474.1 /TIER=ConsEnd /STK=5 /UG=Rn.62474 /UG_TITLE=ESTs BF400033 1376434_at AI101016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101016 /DB_XREF=gi:3704556 /DB_XREF=EST210305 /CLONE=RBRBE23 /FEA=EST /CNT=5 /TID=Rn.15539.1 /TIER=ConsEnd /STK=5 /UG=Rn.15539 /UG_TITLE=ESTs AI101016 1376435_at BI303340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303340 /DB_XREF=gi:14979620 /DB_XREF=UI-R-DR0-cjb-j-15-0-UI.s1 /CLONE=UI-R-DR0-cjb-j-15-0-UI /FEA=EST /CNT=5 /TID=Rn.16292.1 /TIER=ConsEnd /STK=5 /UG=Rn.16292 /UG_TITLE=ESTs BI303340 1376436_at AI071181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071181 /DB_XREF=gi:3397396 /DB_XREF=UI-R-C2-my-f-01-0-UI.s1 /CLONE=UI-R-C2-my-f-01-0-UI /FEA=EST /CNT=5 /TID=Rn.42855.1 /TIER=ConsEnd /STK=5 /UG=Rn.42855 /UG_TITLE=ESTs, Moderately similar to T46287 hypothetical protein DKFZp727I021.1 (H.sapiens) AI071181 lysM and putative peptidoglycan-binding domain-containing protein 3-like /// LysM, putative peptidoglycan-binding, domain containing 3 LOC100360174 /// Lysmd3 100360174 /// 315923 NM_001009698 /// XM_002728893 0016998 // cell wall macromolecule catabolic process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1376437_at BM383834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383834 /DB_XREF=gi:18183887 /DB_XREF=UI-R-DM1-ckb-p-19-0-UI.s1 /CLONE=UI-R-DM1-ckb-p-19-0-UI /FEA=EST /CNT=5 /TID=Rn.9078.1 /TIER=ConsEnd /STK=5 /UG=Rn.9078 /UG_TITLE=ESTs BM383834 1376438_at BF416513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416513 /DB_XREF=gi:11404502 /DB_XREF=UI-R-CA0-bkk-e-07-0-UI.s1 /CLONE=UI-R-CA0-bkk-e-07-0-UI /FEA=EST /CNT=5 /TID=Rn.50142.1 /TIER=ConsEnd /STK=5 /UG=Rn.50142 /UG_TITLE=ESTs BF416513 1376439_at BF403552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403552 /DB_XREF=gi:11391527 /DB_XREF=UI-R-CA1-biz-c-01-0-UI.s1 /CLONE=UI-R-CA1-biz-c-01-0-UI /FEA=EST /CNT=5 /TID=Rn.57750.1 /TIER=ConsEnd /STK=5 /UG=Rn.57750 /UG_TITLE=ESTs BF403552 1376440_at BF391522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391522 /DB_XREF=gi:11376339 /DB_XREF=UI-R-CA1-bcs-a-05-0-UI.s1 /CLONE=UI-R-CA1-bcs-a-05-0-UI /FEA=EST /CNT=5 /TID=Rn.62343.1 /TIER=ConsEnd /STK=5 /UG=Rn.62343 /UG_TITLE=ESTs BF391522 ring finger protein 139 Rnf139 315000 NM_001127545 0031396 // regulation of protein ubiquitination // not recorded 0005783 // endoplasmic reticulum // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376441_at AI102249 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102249 /DB_XREF=gi:3707050 /DB_XREF=EST211538 /CLONE=RBRCB09 /FEA=EST /CNT=5 /TID=Rn.8899.1 /TIER=ConsEnd /STK=5 /UG=Rn.8899 /UG_TITLE=ESTs AI102249 similar to B0511.12 LOC690217 690217 XM_002726706 /// XM_002729652 0016021 // integral to membrane // inferred from electronic annotation 1376442_at BF405719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405719 /DB_XREF=gi:11393694 /DB_XREF=UI-R-CA1-bje-c-01-0-UI.s1 /CLONE=UI-R-CA1-bje-c-01-0-UI /FEA=EST /CNT=5 /TID=Rn.62696.1 /TIER=ConsEnd /STK=5 /UG=Rn.62696 /UG_TITLE=ESTs BF405719 1376443_at BF419009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419009 /DB_XREF=gi:11406998 /DB_XREF=UI-R-BJ2-bqm-e-03-0-UI.s1 /CLONE=UI-R-BJ2-bqm-e-03-0-UI /FEA=EST /CNT=5 /TID=Rn.63464.1 /TIER=ConsEnd /STK=5 /UG=Rn.63464 /UG_TITLE=ESTs BF419009 1376444_at AI059885 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059885 /DB_XREF=gi:3333662 /DB_XREF=UI-R-C1-la-d-12-0-UI.s1 /CLONE=UI-R-C1-la-d-12-0-UI /FEA=EST /CNT=5 /TID=Rn.19305.1 /TIER=ConsEnd /STK=5 /UG=Rn.19305 /UG_TITLE=ESTs AI059885 1376445_at BF409208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409208 /DB_XREF=gi:11397183 /DB_XREF=UI-R-BT1-bkn-c-11-0-UI.s1 /CLONE=UI-R-BT1-bkn-c-11-0-UI /FEA=EST /CNT=5 /TID=Rn.50003.1 /TIER=ConsEnd /STK=5 /UG=Rn.50003 /UG_TITLE=ESTs, Weakly similar to A Chain A, Crystal Structure Of Il-17f (H.sapiens) BF409208 interleukin 17B Il17b 116472 NM_053789 0006954 // inflammatory response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation 1376446_at BE099060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099060 /DB_XREF=gi:8490936 /DB_XREF=UI-R-BJ1-atf-h-04-0-UI.s1 /CLONE=UI-R-BJ1-atf-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.35382.1 /TIER=ConsEnd /STK=5 /UG=Rn.35382 /UG_TITLE=ESTs BE099060 mitochondrial antiviral signaling protein Mavs 311430 NM_001005556 0002230 // positive regulation of defense response to virus by host // not recorded /// 0002230 // positive regulation of defense response to virus by host // inferred from sequence or structural similarity /// 0002230 // positive regulation of defense response to virus by host // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0032727 // positive regulation of interferon-alpha production // not recorded /// 0032727 // positive regulation of interferon-alpha production // inferred from sequence or structural similarity /// 0032727 // positive regulation of interferon-alpha production // inferred from electronic annotation /// 0032728 // positive regulation of interferon-beta production // not recorded /// 0032728 // positive regulation of interferon-beta production // inferred from sequence or structural similarity /// 0032728 // positive regulation of interferon-beta production // inferred from electronic annotation /// 0042742 // defense response to bacterium // not recorded /// 0042742 // defense response to bacterium // inferred from sequence or structural similarity /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0045087 // innate immune response // not recorded /// 0045087 // innate immune response // inferred from sequence or structural similarity /// 0045087 // innate immune response // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376447_at AI706850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI706850 /DB_XREF=gi:4994750 /DB_XREF=UI-R-AA1-aac-b-04-0-UI.s1 /CLONE=UI-R-AA1-aac-b-04-0-UI /FEA=EST /CNT=5 /TID=Rn.44666.1 /TIER=ConsEnd /STK=5 /UG=Rn.44666 /UG_TITLE=ESTs AI706850 similar to hypothetical protein A430110N23 RGD1565772 308341 NM_001134545 0016020 // membrane // inferred from electronic annotation 0005044 // scavenger receptor activity // inferred from electronic annotation 1376448_at AI575081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575081 /DB_XREF=gi:4559457 /DB_XREF=UI-R-G0-ul-b-09-0-UI.s1 /CLONE=UI-R-G0-ul-b-09-0-UI /FEA=EST /CNT=5 /TID=Rn.31294.1 /TIER=ConsEnd /STK=5 /UG=Rn.31294 /UG_TITLE=ESTs AI575081 1376449_at BF407964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407964 /DB_XREF=gi:11395939 /DB_XREF=UI-R-BJ2-bqy-c-10-0-UI.s1 /CLONE=UI-R-BJ2-bqy-c-10-0-UI /FEA=EST /CNT=5 /TID=Rn.63171.1 /TIER=ConsEnd /STK=5 /UG=Rn.63171 /UG_TITLE=ESTs, Weakly similar to OM40_MOUSE PROBABLE MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM40 HOMOLOG (TRANSLOCASE OF OUTER MEMBRANE 40 KDA SUBUNIT HOMOLOG) (M.musculus) BF407964 translocase of outer mitochondrial membrane 40 homolog B (yeast) Tomm40b 304971 NM_001083338 0006810 // transport // inferred from electronic annotation /// 0006820 // anion transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0008308 // voltage-gated anion channel activity // inferred from electronic annotation 1376450_at BG375242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375242 /DB_XREF=gi:13299714 /DB_XREF=UI-R-CV1-bsy-a-10-0-UI.s1 /CLONE=UI-R-CV1-bsy-a-10-0-UI /FEA=EST /CNT=5 /TID=Rn.50274.1 /TIER=ConsEnd /STK=5 /UG=Rn.50274 /UG_TITLE=ESTs BG375242 transmembrane protein 5 Tmem5 299841 NM_001024759 0016021 // integral to membrane // inferred from electronic annotation 1376451_at BG377849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377849 /DB_XREF=gi:13302321 /DB_XREF=UI-R-CU0-bvf-h-08-0-UI.s1 /CLONE=UI-R-CU0-bvf-h-08-0-UI /FEA=EST /CNT=5 /TID=Rn.28857.1 /TIER=ConsEnd /STK=5 /UG=Rn.28857 /UG_TITLE=ESTs, Moderately similar to KRT1_HUMAN KREV INTERACTION TRAPPED 1 (KRIT1) (CEREBRAL CAVERNOUS MALFORMATIONS 1 PROTEIN) (H.sapiens) BG377849 KRIT1, ankyrin repeat containing Krit1 362317 NM_001108618 0005856 // cytoskeleton // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1376452_at BG374420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374420 /DB_XREF=gi:13298892 /DB_XREF=UI-R-CV1-bsp-b-12-0-UI.s1 /CLONE=UI-R-CV1-bsp-b-12-0-UI /FEA=EST /CNT=5 /TID=Rn.59316.1 /TIER=ConsEnd /STK=5 /UG=Rn.59316 /UG_TITLE=ESTs BG374420 1376453_at BF419074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419074 /DB_XREF=gi:11407063 /DB_XREF=UI-R-BJ2-bqn-c-05-0-UI.s1 /CLONE=UI-R-BJ2-bqn-c-05-0-UI /FEA=EST /CNT=5 /TID=Rn.22491.1 /TIER=ConsEnd /STK=5 /UG=Rn.22491 /UG_TITLE=ESTs BF419074 1376454_at BI300534 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300534 /DB_XREF=gi:14976814 /DB_XREF=UI-R-CV2-cim-b-04-0-UI.s1 /CLONE=UI-R-CV2-cim-b-04-0-UI /FEA=EST /CNT=5 /TID=Rn.76385.1 /TIER=ConsEnd /STK=5 /UG=Rn.76385 /UG_TITLE=ESTs BI300534 NIMA (never in mitosis gene a)- related kinase 9 Nek9 299204 NM_001106747 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1376455_at BI296172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296172 /DB_XREF=gi:14960347 /DB_XREF=UI-R-DK0-cex-b-09-0-UI.s1 /CLONE=UI-R-DK0-cex-b-09-0-UI /FEA=EST /CNT=5 /TID=Rn.45697.1 /TIER=ConsEnd /STK=5 /UG=Rn.45697 /UG_TITLE=ESTs BI296172 major facilitator superfamily domain containing 3 Mfsd3 500899 NM_001024908 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1376456_at BE114264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114264 /DB_XREF=gi:8506369 /DB_XREF=UI-R-BJ1-awk-b-09-0-UI.s1 /CLONE=UI-R-BJ1-awk-b-09-0-UI /FEA=EST /CNT=5 /TID=Rn.52343.1 /TIER=ConsEnd /STK=5 /UG=Rn.52343 /UG_TITLE=ESTs, Weakly similar to NADM_YEAST Nicotinamide-nucleotide adenylyltransferase (NAD(+) pyrophosphorylase) (NAD(+) diphosphorylase) (NMN adenylyltransferase) (S.cerevisiae) BE114264 nicotinamide nucleotide adenylyltransferase 2 Nmnat2 289095 NM_001048042 0009058 // biosynthetic process // inferred from electronic annotation /// 0009435 // NAD biosynthetic process // inferred from electronic annotation /// 0019363 // pyridine nucleotide biosynthetic process // inferred from electronic annotation /// 0019674 // NAD metabolic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000309 // nicotinamide-nucleotide adenylyltransferase activity // inferred from electronic annotation /// 0004515 // nicotinate-nucleotide adenylyltransferase activity // inferred from electronic annotation /// 0004515 // nicotinate-nucleotide adenylyltransferase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1376457_at AI175861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175861 /DB_XREF=gi:3726499 /DB_XREF=EST219432 /CLONE=ROVBG40 /FEA=EST /CNT=5 /TID=Rn.8587.1 /TIER=ConsEnd /STK=5 /UG=Rn.8587 /UG_TITLE=ESTs AI175861 cysteine-rich secretory protein LCCL domain containing 2 Crispld2 171547 NM_138518 0030324 // lung development // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation 1376458_at BE114418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114418 /DB_XREF=gi:8506523 /DB_XREF=UI-R-CA0-axm-a-06-0-UI.s1 /CLONE=UI-R-CA0-axm-a-06-0-UI /FEA=EST /CNT=5 /TID=Rn.40956.1 /TIER=ConsEnd /STK=5 /UG=Rn.40956 /UG_TITLE=ESTs BE114418 1376459_at AW533060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533060 /DB_XREF=gi:7175474 /DB_XREF=UI-R-BU0-amz-d-02-0-UI.s1 /CLONE=UI-R-BU0-amz-d-02-0-UI /FEA=EST /CNT=5 /TID=Rn.7570.1 /TIER=ConsEnd /STK=5 /UG=Rn.7570 /UG_TITLE=ESTs AW533060 AP2 associated kinase 1 Aak1 500244 NM_001173450 /// XM_001070331 /// XM_575594 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005905 // coated pit // inferred from electronic annotation /// 0071439 // clathrin complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1376460_at BI286710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286710 /DB_XREF=gi:14941620 /DB_XREF=UI-R-CT0s-caq-f-12-0-UI.s1 /CLONE=UI-R-CT0s-caq-f-12-0-UI /FEA=EST /CNT=5 /TID=Rn.23829.1 /TIER=ConsEnd /STK=5 /UG=Rn.23829 /UG_TITLE=ESTs BI286710 hexaribonucleotide binding protein 3 Hrnbp3 287847 NM_001134498 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1376461_at BF400223 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400223 /DB_XREF=gi:11385234 /DB_XREF=UI-R-CA1-bjc-d-03-0-UI.s1 /CLONE=UI-R-CA1-bjc-d-03-0-UI /FEA=EST /CNT=5 /TID=Rn.23327.1 /TIER=ConsEnd /STK=5 /UG=Rn.23327 /UG_TITLE=ESTs, Weakly similar to DCX MOUSE DOUBLECORTIN (M.musculus) BF400223 Doublecortin-like kinase 2 Dclk2 310698 NM_001009691 /// NM_001195832 0006468 // protein phosphorylation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1376462_at BF392807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392807 /DB_XREF=gi:11377665 /DB_XREF=UI-R-CA0-bfo-e-04-0-UI.s1 /CLONE=UI-R-CA0-bfo-e-04-0-UI /FEA=EST /CNT=5 /TID=Rn.57739.1 /TIER=ConsEnd /STK=5 /UG=Rn.57739 /UG_TITLE=ESTs BF392807 1376463_at AA955579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955579 /DB_XREF=gi:4237974 /DB_XREF=UI-R-E1-fa-b-09-0-UI.s1 /CLONE=UI-R-E1-fa-b-09-0-UI /FEA=EST /CNT=5 /TID=Rn.17336.1 /TIER=ConsEnd /STK=5 /UG=Rn.17336 /UG_TITLE=ESTs AA955579 1376464_at BE102505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102505 /DB_XREF=gi:8494604 /DB_XREF=UI-R-BT1-aqn-d-10-0-UI.s1 /CLONE=UI-R-BT1-aqn-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.24390.1 /TIER=ConsEnd /STK=5 /UG=Rn.24390 /UG_TITLE=ESTs BE102505 1376465_at BI295240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295240 /DB_XREF=gi:14958487 /DB_XREF=UI-R-DK0-cet-e-06-0-UI.s1 /CLONE=UI-R-DK0-cet-e-06-0-UI /FEA=EST /CNT=5 /TID=Rn.24047.1 /TIER=ConsEnd /STK=5 /UG=Rn.24047 /UG_TITLE=ESTs BI295240 1376466_at BF419536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419536 /DB_XREF=gi:11407525 /DB_XREF=UI-R-CA0-bpd-b-03-0-UI.s1 /CLONE=UI-R-CA0-bpd-b-03-0-UI /FEA=EST /CNT=5 /TID=Rn.53288.1 /TIER=ConsEnd /STK=5 /UG=Rn.53288 /UG_TITLE=ESTs BF419536 1376467_at AI009054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009054 /DB_XREF=gi:4132985 /DB_XREF=EST203505 /CLONE=REMBH72 /FEA=EST /CNT=5 /TID=Rn.23372.1 /TIER=ConsEnd /STK=5 /UG=Rn.23372 /UG_TITLE=ESTs, Moderately similar to I58377 LTG19 (H.sapiens) AI009054 Myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1 Mllt1 301119 NM_001106876 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1376468_at AI411501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411501 /DB_XREF=gi:4255005 /DB_XREF=EST239795 /CLONE=RKIEN04 /FEA=EST /CNT=5 /TID=Rn.35537.1 /TIER=ConsEnd /STK=5 /UG=Rn.35537 /UG_TITLE=ESTs AI411501 histidyl-tRNA synthetase Hars 307492 NM_001025414 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006427 // histidyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004821 // histidine-tRNA ligase activity // inferred from electronic annotation /// 0004821 // histidine-tRNA ligase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1376469_at BF392632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392632 /DB_XREF=gi:11377489 /DB_XREF=UI-R-CA0-bfl-d-12-0-UI.s1 /CLONE=UI-R-CA0-bfl-d-12-0-UI /FEA=EST /CNT=5 /TID=Rn.63545.1 /TIER=ConsEnd /STK=5 /UG=Rn.63545 /UG_TITLE=ESTs BF392632 1376470_at BG372703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372703 /DB_XREF=gi:13269240 /DB_XREF=UI-R-CV1-brz-e-08-0-UI.s1 /CLONE=UI-R-CV1-brz-e-08-0-UI /FEA=EST /CNT=5 /TID=Rn.66946.1 /TIER=ConsEnd /STK=5 /UG=Rn.66946 /UG_TITLE=ESTs BG372703 formin binding protein 4 Fnbp4 311183 NM_001013159 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376471_at BF405630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405630 /DB_XREF=gi:11393605 /DB_XREF=UI-R-CA1-bix-o-14-0-UI.s1 /CLONE=UI-R-CA1-bix-o-14-0-UI /FEA=EST /CNT=5 /TID=Rn.61377.1 /TIER=ConsEnd /STK=5 /UG=Rn.61377 /UG_TITLE=ESTs BF405630 1376472_at AI714119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI714119 /DB_XREF=gi:5017919 /DB_XREF=UI-R-AF1-aaq-g-04-0-UI.s1 /CLONE=UI-R-AF1-aaq-g-04-0-UI /FEA=EST /CNT=5 /TID=Rn.40860.1 /TIER=ConsEnd /STK=5 /UG=Rn.40860 /UG_TITLE=ESTs AI714119 1376473_at BF398978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398978 /DB_XREF=gi:11383982 /DB_XREF=UI-R-CA1-biz-g-10-0-UI.s1 /CLONE=UI-R-CA1-biz-g-10-0-UI /FEA=EST /CNT=5 /TID=Rn.61405.1 /TIER=ConsEnd /STK=5 /UG=Rn.61405 /UG_TITLE=ESTs BF398978 1376474_at BG379076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379076 /DB_XREF=gi:13303548 /DB_XREF=UI-R-BT1-bnh-g-07-0-UI.s1 /CLONE=UI-R-BT1-bnh-g-07-0-UI /FEA=EST /CNT=5 /TID=Rn.62148.1 /TIER=ConsEnd /STK=5 /UG=Rn.62148 /UG_TITLE=ESTs BG379076 rCG33447-like LOC100362817 100362817 XM_002724617 /// XM_002727745 1376475_at BF413090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413090 /DB_XREF=gi:11401079 /DB_XREF=UI-R-CA0-bod-e-11-0-UI.s1 /CLONE=UI-R-CA0-bod-e-11-0-UI /FEA=EST /CNT=5 /TID=Rn.62242.1 /TIER=ConsEnd /STK=5 /UG=Rn.62242 /UG_TITLE=ESTs BF413090 1376476_at BI279598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279598 /DB_XREF=gi:14927568 /DB_XREF=UI-R-DE0-cae-d-12-0-UI.s1 /CLONE=UI-R-DE0-cae-d-12-0-UI /FEA=EST /CNT=5 /TID=Rn.34729.1 /TIER=ConsEnd /STK=5 /UG=Rn.34729 /UG_TITLE=ESTs BI279598 TEL2, telomere maintenance 2, homolog (S. cerevisiae) Telo2 302986 XM_001059179 /// XM_220236 0005622 // intracellular // not recorded 0005515 // protein binding // not recorded 1376477_at BF391517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391517 /DB_XREF=gi:11376334 /DB_XREF=UI-R-CA1-bcx-h-12-0-UI.s1 /CLONE=UI-R-CA1-bcx-h-12-0-UI /FEA=EST /CNT=5 /TID=Rn.62947.1 /TIER=ConsEnd /STK=5 /UG=Rn.62947 /UG_TITLE=ESTs BF391517 1376478_at BF401684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401684 /DB_XREF=gi:11389659 /DB_XREF=UI-R-CA0-bgn-d-12-0-UI.s1 /CLONE=UI-R-CA0-bgn-d-12-0-UI /FEA=EST /CNT=5 /TID=Rn.60823.1 /TIER=ConsEnd /STK=5 /UG=Rn.60823 /UG_TITLE=ESTs BF401684 1376479_at AI045461 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045461 /DB_XREF=gi:3292280 /DB_XREF=UI-R-C1-jz-f-09-0-UI.s2 /CLONE=UI-R-C1-jz-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.16723.1 /TIER=ConsEnd /STK=5 /UG=Rn.16723 /UG_TITLE=ESTs, Moderately similar to KIAA0561 protein (H.sapiens) AI045461 Microtubule associated serine/threonine kinase 3 Mast3 688540 NM_001134796 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1376480_at BF398798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398798 /DB_XREF=gi:11383799 /DB_XREF=UI-R-CA1-biz-e-03-0-UI.s1 /CLONE=UI-R-CA1-biz-e-03-0-UI /FEA=EST /CNT=5 /TID=Rn.59163.1 /TIER=ConsEnd /STK=5 /UG=Rn.59163 /UG_TITLE=ESTs BF398798 1376481_at BF416285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416285 /DB_XREF=gi:11404274 /DB_XREF=UI-R-CA0-bkr-f-07-0-UI.s1 /CLONE=UI-R-CA0-bkr-f-07-0-UI /FEA=EST /CNT=5 /TID=Rn.62976.1 /TIER=ConsEnd /STK=5 /UG=Rn.62976 /UG_TITLE=ESTs BF416285 a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 9 Adamts9 312566 NM_001107877 0006508 // proteolysis // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376482_at BF402458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402458 /DB_XREF=gi:11390433 /DB_XREF=UI-R-CA0-bhp-e-04-0-UI.s1 /CLONE=UI-R-CA0-bhp-e-04-0-UI /FEA=EST /CNT=5 /TID=Rn.63600.1 /TIER=ConsEnd /STK=5 /UG=Rn.63600 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) BF402458 zinc finger protein 667 Znf667 308326 NM_001008557 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376483_at AW251852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251852 /DB_XREF=gi:6595443 /DB_XREF=UI-R-BJ0-adl-g-02-0-UI.s1 /CLONE=UI-R-BJ0-adl-g-02-0-UI /FEA=EST /CNT=5 /TID=Rn.8983.1 /TIER=ConsEnd /STK=5 /UG=Rn.8983 /UG_TITLE=ESTs, Highly similar to LSM5_HUMAN U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5 (H.sapiens) AW251852 LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) Lsm5 306222 NM_001107289 0005515 // protein binding // not recorded 1376484_at BG375060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375060 /DB_XREF=gi:13299532 /DB_XREF=UI-R-CV1-bst-f-06-0-UI.s1 /CLONE=UI-R-CV1-bst-f-06-0-UI /FEA=EST /CNT=5 /TID=Rn.76405.1 /TIER=ConsEnd /STK=5 /UG=Rn.76405 /UG_TITLE=ESTs BG375060 1376485_at BG377082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377082 /DB_XREF=gi:13301554 /DB_XREF=UI-R-CU0-buw-c-03-0-UI.s1 /CLONE=UI-R-CU0-buw-c-03-0-UI /FEA=EST /CNT=5 /TID=Rn.8891.1 /TIER=ConsEnd /STK=5 /UG=Rn.8891 /UG_TITLE=ESTs BG377082 TRAF-interacting protein Traip 367167 NM_001109004 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded 0005057 // receptor signaling protein activity // inferred from electronic annotation /// 0005057 // receptor signaling protein activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376486_at BG381092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381092 /DB_XREF=gi:13305564 /DB_XREF=UI-R-CS0-btr-b-05-0-UI.s1 /CLONE=UI-R-CS0-btr-b-05-0-UI /FEA=EST /CNT=5 /TID=Rn.26881.1 /TIER=ConsEnd /STK=5 /UG=Rn.26881 /UG_TITLE=ESTs BG381092 SH3-domain GRB2-like endophilin B2 Sh3glb2 311848 NM_001009692 0007165 // signal transduction // inferred from electronic annotation /// 0046847 // filopodium assembly // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008093 // cytoskeletal adaptor activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation 1376487_at AI044046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044046 /DB_XREF=gi:3290781 /DB_XREF=UI-R-C1-js-d-03-0-UI.s1 /CLONE=UI-R-C1-js-d-03-0-UI /FEA=EST /CNT=5 /TID=Rn.18789.1 /TIER=ConsEnd /STK=5 /UG=Rn.18789 /UG_TITLE=ESTs AI044046 Rh family, C glycoprotein Rhcg 293048 NM_183053 0006810 // transport // inferred from electronic annotation /// 0006873 // cellular ion homeostasis // not recorded /// 0006873 // cellular ion homeostasis // inferred from sequence or structural similarity /// 0006873 // cellular ion homeostasis // inferred from electronic annotation /// 0006885 // regulation of pH // inferred from electronic annotation /// 0006885 // regulation of pH // not recorded /// 0015696 // ammonium transport // inferred from direct assay /// 0015696 // ammonium transport // not recorded /// 0015696 // ammonium transport // inferred from sequence or structural similarity /// 0015696 // ammonium transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055085 // transmembrane transport // not recorded /// 0070634 // transepithelial ammonium transport // not recorded /// 0070634 // transepithelial ammonium transport // inferred from sequence or structural similarity /// 0070634 // transepithelial ammonium transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from sequence or structural similarity /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from sequence or structural similarity /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from direct assay 0008519 // ammonium transmembrane transporter activity // not recorded /// 0008519 // ammonium transmembrane transporter activity // inferred from sequence or structural similarity /// 0008519 // ammonium transmembrane transporter activity // inferred from electronic annotation /// 0030506 // ankyrin binding // not recorded /// 0030506 // ankyrin binding // inferred from sequence or structural similarity /// 0030506 // ankyrin binding // inferred from electronic annotation /// 0051739 // ammonia transmembrane transporter activity // inferred from direct assay /// 0051739 // ammonia transmembrane transporter activity // not recorded /// 0051739 // ammonia transmembrane transporter activity // inferred from electronic annotation 1376488_at AI101689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101689 /DB_XREF=gi:3706559 /DB_XREF=EST210978 /CLONE=RBRBT81 /FEA=EST /CNT=5 /TID=Rn.19998.1 /TIER=ConsEnd /STK=5 /UG=Rn.19998 /UG_TITLE=ESTs AI101689 1376489_at BF397919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397919 /DB_XREF=gi:11382904 /DB_XREF=UI-R-BS2-bef-b-11-0-UI.s1 /CLONE=UI-R-BS2-bef-b-11-0-UI /FEA=EST /CNT=5 /TID=Rn.4226.1 /TIER=ConsEnd /STK=5 /UG=Rn.4226 /UG_TITLE=ESTs BF397919 son of sevenless homolog 2 (Drosophila) Sos2 85384 NM_001135561 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005088 // Ras guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1376490_at BG378933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378933 /DB_XREF=gi:13303405 /DB_XREF=UI-R-CV1-bvu-g-05-0-UI.s1 /CLONE=UI-R-CV1-bvu-g-05-0-UI /FEA=EST /CNT=5 /TID=Rn.23400.1 /TIER=ConsEnd /STK=5 /UG=Rn.23400 /UG_TITLE=ESTs BG378933 1376491_a_at AI008615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008615 /DB_XREF=gi:3222447 /DB_XREF=EST203066 /CLONE=REMAZ74 /FEA=EST /CNT=1 /TID=Rn.65029.2 /TIER=ConsEnd /STK=1 /UG=Rn.65029 /UG_TITLE=ESTs, Weakly similar to S47628 GTA-kinase - rat (R.norvegicus) AI008615 Cyclin-dependent kinase 9 Cdk9 362110 NM_001007743 0006350 // transcription // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from electronic annotation /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017069 // snRNA binding // inferred from electronic annotation /// 0017069 // snRNA binding // not recorded 1376492_at AI548527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548527 /DB_XREF=gi:4466015 /DB_XREF=UI-R-C3-to-d-12-0-UI.s1 /CLONE=UI-R-C3-to-d-12-0-UI /FEA=EST /CNT=5 /TID=Rn.42026.1 /TIER=ConsEnd /STK=5 /UG=Rn.42026 /UG_TITLE=ESTs AI548527 1376493_at AI408996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408996 /DB_XREF=gi:4252500 /DB_XREF=EST237287 /CLONE=RKIEV09 /FEA=EST /CNT=5 /TID=Rn.12079.1 /TIER=ConsEnd /STK=5 /UG=Rn.12079 /UG_TITLE=ESTs AI408996 COMM domain containing 7 Commd7 296285 NM_001030029 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0033209 // tumor necrosis factor-mediated signaling pathway // inferred from electronic annotation /// 0033209 // tumor necrosis factor-mediated signaling pathway // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051059 // NF-kappaB binding // inferred from electronic annotation /// 0051059 // NF-kappaB binding // not recorded 1376494_at BI292908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292908 /DB_XREF=gi:14953887 /DB_XREF=UI-R-DO0-cix-b-02-0-UI.s1 /CLONE=UI-R-DO0-cix-b-02-0-UI /FEA=EST /CNT=5 /TID=Rn.46911.1 /TIER=ConsEnd /STK=5 /UG=Rn.46911 /UG_TITLE=ESTs BI292908 polymerase (DNA directed), epsilon 3 (p17 subunit) Pole3 298098 NM_001007652 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1376495_at AI172054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172054 /DB_XREF=gi:3712094 /DB_XREF=EST218049 /CLONE=RMUBU37 /FEA=EST /CNT=5 /TID=Rn.12470.1 /TIER=ConsEnd /STK=5 /UG=Rn.12470 /UG_TITLE=ESTs AI172054 1376496_at AI717736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717736 /DB_XREF=gi:5034992 /DB_XREF=UI-R-Y0-acq-h-09-0-UI.s1 /CLONE=UI-R-Y0-acq-h-09-0-UI /FEA=EST /CNT=5 /TID=Rn.19715.1 /TIER=ConsEnd /STK=5 /UG=Rn.19715 /UG_TITLE=ESTs AI717736 apolipoprotein L 9a Apol9a 503164 NM_001025066 0006869 // lipid transport // inferred from electronic annotation /// 0042157 // lipoprotein metabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0008289 // lipid binding // inferred from electronic annotation 1376497_a_at BI274096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274096 /DB_XREF=gi:14884695 /DB_XREF=UI-R-CW0-bwc-h-02-0-UI.s1 /CLONE=UI-R-CW0-bwc-h-02-0-UI /FEA=EST /CNT=5 /TID=Rn.8815.1 /TIER=ConsEnd /STK=5 /UG=Rn.8815 /UG_TITLE=ESTs BI274096 methyltransferase 11 domain containing 1 Mett11d1 305845 XM_001053790 /// XM_223974 0006412 // translation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005739 // mitochondrion // not recorded 0005507 // copper ion binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation 1376498_at BI282766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282766 /DB_XREF=gi:14933860 /DB_XREF=UI-R-CW0s-cce-h-11-0-UI.s1 /CLONE=UI-R-CW0s-cce-h-11-0-UI /FEA=EST /CNT=5 /TID=Rn.23292.1 /TIER=ConsEnd /STK=5 /UG=Rn.23292 /UG_TITLE=ESTs BI282766 Rab interacting lysosomal protein-like 1 Rilpl1 304469 NM_001191665 /// XM_001079000 /// XM_002724817 /// XM_222150 1376499_at AW252124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252124 /DB_XREF=gi:6595715 /DB_XREF=UI-R-BJ0-aee-e-01-0-UI.s1 /CLONE=UI-R-BJ0-aee-e-01-0-UI /FEA=EST /CNT=5 /TID=Rn.41398.2 /TIER=ConsEnd /STK=5 /UG=Rn.41398 /UG_TITLE=ESTs, Weakly similar to Y167_HUMAN HYPOTHETICAL PROTEIN KIAA0167 (H.sapiens) AW252124 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 Agap3 362300 NM_001108616 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1376500_at AI639044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639044 /DB_XREF=gi:4700078 /DB_XREF=rx00646s /CLONE=rx00646 /FEA=EST /CNT=5 /TID=Rn.39086.1 /TIER=ConsEnd /STK=5 /UG=Rn.39086 /UG_TITLE=ESTs, Moderately similar to T4S9_MOUSE TRANSMEMBRANE 4 SUPERFAMILY, MEMBER 8 (TETRASPANIN 5) (TSPAN-5) (M.musculus) AI639044 F-box only protein 23 Fbxo23 306771 NM_001013138 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1376501_at AA945062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945062 /DB_XREF=gi:4132488 /DB_XREF=EST200561 /CLONE=RLIAG02 /FEA=EST /CNT=5 /TID=Rn.7830.1 /TIER=ConsEnd /STK=5 /UG=Rn.7830 /UG_TITLE=ESTs, Weakly similar to B53764 beta2-chimerin, cerebellar - rat (R.norvegicus) AA945062 Rho GTPase activating protein 8 Arhgap8 300115 NM_001004242 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 1376502_at AW523504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523504 /DB_XREF=gi:7165889 /DB_XREF=UI-R-BO0-aho-h-07-0-UI.s1 /CLONE=UI-R-BO0-aho-h-07-0-UI /FEA=EST /CNT=5 /TID=Rn.41348.1 /TIER=ConsEnd /STK=5 /UG=Rn.41348 /UG_TITLE=ESTs AW523504 similar to putative protein, with at least 9 transmembrane domains, of eukaryotic origin (43.9 kD) (2G415) RGD1309228 298851 NM_001017451 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1376503_a_at BE104991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104991 /DB_XREF=gi:8497092 /DB_XREF=UI-R-BX0-asf-a-09-0-UI.s1 /CLONE=UI-R-BX0-asf-a-09-0-UI /FEA=EST /CNT=5 /TID=Rn.22366.1 /TIER=ConsEnd /STK=5 /UG=Rn.22366 /UG_TITLE=ESTs, Weakly similar to S72435 RNA-binding protein TIA-1 - mouse (M.musculus) BE104991 RNA binding motif protein 7 Rbm7 315634 NM_001108143 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376504_at AI145685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145685 /DB_XREF=gi:3667484 /DB_XREF=UI-R-BT0-qd-c-03-0-UI.s1 /CLONE=UI-R-BT0-qd-c-03-0-UI /FEA=EST /CNT=5 /TID=Rn.23591.1 /TIER=ConsEnd /STK=5 /UG=Rn.23591 /UG_TITLE=ESTs, Moderately similar to T00026 brain-specific angiogenesis inhibitor 1 (H.sapiens) AI145685 brain-specific angiogenesis inhibitor 1 Bai1 362931 NM_001170597 /// XM_001073400 /// XM_343260 0007218 // neuropeptide signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0016527 // brain-specific angiogenesis inhibitor activity // inferred from electronic annotation 1376505_at AA819112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819112 /DB_XREF=gi:4227775 /DB_XREF=UI-R-A0-ba-a-02-0-UI.s1 /CLONE=UI-R-A0-ba-a-02-0-UI /FEA=EST /CNT=5 /TID=Rn.43188.1 /TIER=ConsEnd /STK=5 /UG=Rn.43188 /UG_TITLE=ESTs AA819112 1376506_at BE097618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097618 /DB_XREF=gi:8488549 /DB_XREF=UI-R-BO1-apz-g-05-0-UI.s1 /CLONE=UI-R-BO1-apz-g-05-0-UI /FEA=EST /CNT=5 /TID=Rn.44730.1 /TIER=ConsEnd /STK=5 /UG=Rn.44730 /UG_TITLE=ESTs BE097618 Similar to PR domain containing 11 LOC690358 690358 XM_001074223 /// XM_002726207 1376507_a_at AI044972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044972 /DB_XREF=gi:3291791 /DB_XREF=UI-R-C1-ke-a-08-0-UI.s1 /CLONE=UI-R-C1-ke-a-08-0-UI /FEA=EST /CNT=5 /TID=Rn.33601.1 /TIER=ConsEnd /STK=5 /UG=Rn.33601 /UG_TITLE=ESTs AI044972 LEM domain containing 2 Lemd2 361807 NM_001039032 0005639 // integral to nuclear inner membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded 1376508_at AI044972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044972 /DB_XREF=gi:3291791 /DB_XREF=UI-R-C1-ke-a-08-0-UI.s1 /CLONE=UI-R-C1-ke-a-08-0-UI /FEA=EST /CNT=5 /TID=Rn.33601.1 /TIER=ConsEnd /STK=5 /UG=Rn.33601 /UG_TITLE=ESTs AI044972 LEM domain containing 2 Lemd2 361807 NM_001039032 0005639 // integral to nuclear inner membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded 1376509_at AW435117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435117 /DB_XREF=gi:6966424 /DB_XREF=UI-R-BJ0p-afy-g-07-0-UI.s1 /CLONE=UI-R-BJ0p-afy-g-07-0-UI /FEA=EST /CNT=5 /TID=Rn.22177.1 /TIER=ConsEnd /STK=5 /UG=Rn.22177 /UG_TITLE=ESTs AW435117 1376510_at AI072079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072079 /DB_XREF=gi:3398273 /DB_XREF=UI-R-C2-nf-c-08-0-UI.s1 /CLONE=UI-R-C2-nf-c-08-0-UI /FEA=EST /CNT=5 /TID=Rn.23519.1 /TIER=ConsEnd /STK=5 /UG=Rn.23519 /UG_TITLE=ESTs AI072079 1376511_at AW252872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252872 /DB_XREF=gi:6596463 /DB_XREF=UI-R-BJ0-ael-f-11-0-UI.s1 /CLONE=UI-R-BJ0-ael-f-11-0-UI /FEA=EST /CNT=5 /TID=Rn.40307.1 /TIER=ConsEnd /STK=5 /UG=Rn.40307 /UG_TITLE=ESTs, Weakly similar to A48998 nucleolar protein p120 - mouse (M.musculus) AW252872 NOL1/NOP2/Sun domain family, member 5 Nsun5 288595 NM_001191593 /// XM_001071177 /// XM_213749 1376512_at BI290160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290160 /DB_XREF=gi:14948472 /DB_XREF=UI-R-DK0-cfs-h-01-0-UI.s1 /CLONE=UI-R-DK0-cfs-h-01-0-UI /FEA=EST /CNT=5 /TID=Rn.45030.1 /TIER=ConsEnd /STK=5 /UG=Rn.45030 /UG_TITLE=ESTs, Moderately similar to cell division protein FtsJ (Homo sapiens) (H.sapiens) BI290160 FtsJ homolog 2 (E. coli) Ftsj2 304323 NM_001107125 0006364 // rRNA processing // inferred from electronic annotation /// 0031167 // rRNA methylation // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008173 // RNA methyltransferase activity // inferred from electronic annotation /// 0008650 // rRNA (uridine-2'-O-)-methyltransferase activity // inferred from electronic annotation 1376513_a_at BE098803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098803 /DB_XREF=gi:8490672 /DB_XREF=UI-R-BJ1-ate-a-08-0-UI.s1 /CLONE=UI-R-BJ1-ate-a-08-0-UI /FEA=EST /CNT=5 /TID=Rn.23259.1 /TIER=ConsEnd /STK=5 /UG=Rn.23259 /UG_TITLE=ESTs BE098803 1376514_at BF409548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409548 /DB_XREF=gi:11397523 /DB_XREF=UI-R-CA1-bll-e-12-0-UI.s1 /CLONE=UI-R-CA1-bll-e-12-0-UI /FEA=EST /CNT=5 /TID=Rn.60029.1 /TIER=ConsEnd /STK=5 /UG=Rn.60029 /UG_TITLE=ESTs BF409548 1376515_at AI137236 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137236 /DB_XREF=gi:3638013 /DB_XREF=UI-R-C2p-oj-h-11-0-UI.s1 /CLONE=UI-R-C2p-oj-h-11-0-UI /FEA=EST /CNT=5 /TID=Rn.36501.1 /TIER=ConsEnd /STK=5 /UG=Rn.36501 /UG_TITLE=ESTs AI137236 1376516_at BG372587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372587 /DB_XREF=gi:13269124 /DB_XREF=UI-R-CV1-brv-h-06-0-UI.s1 /CLONE=UI-R-CV1-brv-h-06-0-UI /FEA=EST /CNT=5 /TID=Rn.49088.1 /TIER=ConsEnd /STK=5 /UG=Rn.49088 /UG_TITLE=ESTs, Weakly similar to B48013 proline-rich proteoglycan 2 precursor, parotid - rat (R.norvegicus) BG372587 FLYWCH-type zinc finger 1 Flywch1 360488 XM_001056224 /// XM_340760 1376517_at AW530281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530281 /DB_XREF=gi:7172695 /DB_XREF=UI-R-BU0-amu-g-07-0-UI.s1 /CLONE=UI-R-BU0-amu-g-07-0-UI /FEA=EST /CNT=5 /TID=Rn.38438.1 /TIER=ConsEnd /STK=5 /UG=Rn.38438 /UG_TITLE=ESTs, Highly similar to HX1L MOUSE HOMEOBOX PROTEIN HOX-11L1 (M.musculus) AW530281 T-cell leukemia homeobox 2 Tlx2 680117 NM_001172125 /// XM_001054603 /// XM_002726406 0001707 // mesoderm formation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048484 // enteric nervous system development // not recorded /// 0050774 // negative regulation of dendrite morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1376518_at BF396739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396739 /DB_XREF=gi:11381719 /DB_XREF=UI-R-BS2-beu-f-02-0-UI.s1 /CLONE=UI-R-BS2-beu-f-02-0-UI /FEA=EST /CNT=5 /TID=Rn.63396.1 /TIER=ConsEnd /STK=5 /UG=Rn.63396 /UG_TITLE=ESTs BF396739 paralemmin 3 LOC100359592 100359592 XM_002728582 1376519_at BI280846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280846 /DB_XREF=gi:14930015 /DB_XREF=UI-R-CS0s-cbg-g-05-0-UI.s1 /CLONE=UI-R-CS0s-cbg-g-05-0-UI /FEA=EST /CNT=5 /TID=Rn.52311.1 /TIER=ConsEnd /STK=5 /UG=Rn.52311 /UG_TITLE=ESTs BI280846 brain protein 16 Brp16 315094 NM_001007707 0005488 // binding // inferred from electronic annotation 1376520_at BE117616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117616 /DB_XREF=gi:8509721 /DB_XREF=UI-R-BS1-ayk-h-07-0-UI.s1 /CLONE=UI-R-BS1-ayk-h-07-0-UI /FEA=EST /CNT=5 /TID=Rn.12409.1 /TIER=ConsEnd /STK=5 /UG=Rn.12409 /UG_TITLE=ESTs BE117616 1376521_at BG378315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378315 /DB_XREF=gi:13302787 /DB_XREF=UI-R-CV1-bvq-f-07-0-UI.s1 /CLONE=UI-R-CV1-bvq-f-07-0-UI /FEA=EST /CNT=5 /TID=Rn.73205.1 /TIER=ConsEnd /STK=5 /UG=Rn.73205 /UG_TITLE=ESTs BG378315 1376522_at BI291288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291288 /DB_XREF=gi:14950686 /DB_XREF=UI-R-CV2-cgn-h-01-0-UI.s1 /CLONE=UI-R-CV2-cgn-h-01-0-UI /FEA=EST /CNT=5 /TID=Rn.73468.1 /TIER=ConsEnd /STK=5 /UG=Rn.73468 /UG_TITLE=ESTs BI291288 1376523_at BF391127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391127 /DB_XREF=gi:11375974 /DB_XREF=UI-R-CA1-bcd-e-08-0-UI.s1 /CLONE=UI-R-CA1-bcd-e-08-0-UI /FEA=EST /CNT=5 /TID=Rn.57401.1 /TIER=ConsEnd /STK=5 /UG=Rn.57401 /UG_TITLE=ESTs, Weakly similar to DRI1_MOUSE DEAD RINGER LIKE-1 PROTEIN (B-CELL REGULATOR OF IGH TRANSCRIPTION) (BRIGHT) (M.musculus) BF391127 AT rich interactive domain 4A (Rbp1 like) Arid4a 314205 NM_001108029 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0000785 // chromatin // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded 1376524_at BG378747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378747 /DB_XREF=gi:13303219 /DB_XREF=UI-R-CV1-bvs-d-06-0-UI.s1 /CLONE=UI-R-CV1-bvs-d-06-0-UI /FEA=EST /CNT=5 /TID=Rn.57719.1 /TIER=ConsEnd /STK=5 /UG=Rn.57719 /UG_TITLE=ESTs, Moderately similar to JC7185 chromosome 1 C1orf9 protein (H.sapiens) BG378747 hypothetical protein Dd25 Dd25 360863 NM_199403 0001503 // ossification // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030867 // rough endoplasmic reticulum membrane // inferred from electronic annotation 1376525_at BI296632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296632 /DB_XREF=gi:14961248 /DB_XREF=UI-R-CV2-cgt-e-05-0-UI.s1 /CLONE=UI-R-CV2-cgt-e-05-0-UI /FEA=EST /CNT=5 /TID=Rn.66158.1 /TIER=ConsEnd /STK=5 /UG=Rn.66158 /UG_TITLE=ESTs BI296632 KH-type splicing regulatory protein Khsrp 171137 NM_133602 0006350 // transcription // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1376526_at BG378756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378756 /DB_XREF=gi:13303228 /DB_XREF=UI-R-CV1-bvs-e-04-0-UI.s1 /CLONE=UI-R-CV1-bvs-e-04-0-UI /FEA=EST /CNT=5 /TID=Rn.66600.1 /TIER=ConsEnd /STK=5 /UG=Rn.66600 /UG_TITLE=ESTs BG378756 1376527_at BI291223 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291223 /DB_XREF=gi:14950562 /DB_XREF=UI-R-CV2-cgm-f-08-0-UI.s1 /CLONE=UI-R-CV2-cgm-f-08-0-UI /FEA=EST /CNT=5 /TID=Rn.73436.1 /TIER=ConsEnd /STK=5 /UG=Rn.73436 /UG_TITLE=ESTs BI291223 1376528_at BI296471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296471 /DB_XREF=gi:14960926 /DB_XREF=UI-R-CV2-cgr-e-12-0-UI.s1 /CLONE=UI-R-CV2-cgr-e-12-0-UI /FEA=EST /CNT=5 /TID=Rn.76387.1 /TIER=ConsEnd /STK=5 /UG=Rn.76387 /UG_TITLE=ESTs BI296471 mediator complex subunit 16 Med16 299607 NM_001106768 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0030518 // steroid hormone receptor signaling pathway // not recorded /// 0030521 // androgen receptor signaling pathway // not recorded 0016592 // mediator complex // not recorded 0003712 // transcription cofactor activity // not recorded /// 0004872 // receptor activity // not recorded /// 0016563 // transcription activator activity // not recorded /// 0030375 // thyroid hormone receptor coactivator activity // not recorded /// 0046966 // thyroid hormone receptor binding // not recorded 1376529_at BF390770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390770 /DB_XREF=gi:11375617 /DB_XREF=UI-R-CA1-bcp-c-06-0-UI.s1 /CLONE=UI-R-CA1-bcp-c-06-0-UI /FEA=EST /CNT=5 /TID=Rn.47382.1 /TIER=ConsEnd /STK=5 /UG=Rn.47382 /UG_TITLE=ESTs BF390770 1376530_at BF403095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403095 /DB_XREF=gi:11391070 /DB_XREF=UI-R-CA0-biy-j-10-0-UI.s1 /CLONE=UI-R-CA0-biy-j-10-0-UI /FEA=EST /CNT=5 /TID=Rn.59361.1 /TIER=ConsEnd /STK=5 /UG=Rn.59361 /UG_TITLE=ESTs BF403095 1376531_at BF416276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416276 /DB_XREF=gi:11404265 /DB_XREF=UI-R-CA0-bkr-e-08-0-UI.s1 /CLONE=UI-R-CA0-bkr-e-08-0-UI /FEA=EST /CNT=5 /TID=Rn.61738.1 /TIER=ConsEnd /STK=5 /UG=Rn.61738 /UG_TITLE=ESTs BF416276 1376532_at AW533292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533292 /DB_XREF=gi:7175706 /DB_XREF=UI-R-BU0-anf-b-09-0-UI.s1 /CLONE=UI-R-BU0-anf-b-09-0-UI /FEA=EST /CNT=5 /TID=Rn.38886.1 /TIER=ConsEnd /STK=5 /UG=Rn.38886 /UG_TITLE=ESTs, Moderately similar to T46917 hypothetical protein DKFZp762K137.1 (H.sapiens) AW533292 fibronectin type III domain containing 3B Fndc3b 294925 NM_001191704 /// XM_001057133 /// XM_226988 0045600 // positive regulation of fat cell differentiation // not recorded 0005783 // endoplasmic reticulum // not recorded 1376533_at BF398368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398368 /DB_XREF=gi:11383357 /DB_XREF=UI-R-BS2-beo-a-04-0-UI.s1 /CLONE=UI-R-BS2-beo-a-04-0-UI /FEA=EST /CNT=5 /TID=Rn.42089.1 /TIER=ConsEnd /STK=5 /UG=Rn.42089 /UG_TITLE=ESTs, Weakly similar to T30989 serinethreonine protein kinase NIK - mouse (M.musculus) BF398368 bromodomain adjacent to zinc finger domain, 2B Baz2b 317627 NM_001108260 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376534_at BF403434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403434 /DB_XREF=gi:11391371 /DB_XREF=UI-R-CA1-biy-d-01-0-UI.s1 /CLONE=UI-R-CA1-biy-d-01-0-UI /FEA=EST /CNT=5 /TID=Rn.62398.1 /TIER=ConsEnd /STK=5 /UG=Rn.62398 /UG_TITLE=ESTs BF403434 1376535_at BE104330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104330 /DB_XREF=gi:8496430 /DB_XREF=UI-R-BX0-arn-e-07-0-UI.s1 /CLONE=UI-R-BX0-arn-e-07-0-UI /FEA=EST /CNT=5 /TID=Rn.62609.1 /TIER=ConsEnd /STK=5 /UG=Rn.62609 /UG_TITLE=ESTs BE104330 MAM domain containing glycosylphosphatidylinositol anchor 1 Mdga1 309659 NM_001107618 0001764 // neuron migration // inferred from sequence or structural similarity /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0021527 // spinal cord association neuron differentiation // inferred from expression pattern /// 0030154 // cell differentiation // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0046658 // anchored to plasma membrane // inferred from direct assay 1376536_at AW533496 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533496 /DB_XREF=gi:7175910 /DB_XREF=UI-R-BU0-ani-f-01-0-UI.s1 /CLONE=UI-R-BU0-ani-f-01-0-UI /FEA=EST /CNT=5 /TID=Rn.47938.1 /TIER=ConsEnd /STK=5 /UG=Rn.47938 /UG_TITLE=ESTs AW533496 Discs, large (Drosophila) homolog-associated protein 2 Dlgap2 116681 NM_053901 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007270 // nerve-nerve synaptic transmission // non-traceable author statement 0005883 // neurofilament // non-traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // non-traceable author statement /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004385 // guanylate kinase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from direct assay 1376537_at AW435010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435010 /DB_XREF=gi:6966317 /DB_XREF=UI-R-BJ0p-afv-f-02-0-UI.s1 /CLONE=UI-R-BJ0p-afv-f-02-0-UI /FEA=EST /CNT=5 /TID=Rn.20486.1 /TIER=ConsEnd /STK=5 /UG=Rn.20486 /UG_TITLE=ESTs AW435010 Protein tyrosine phosphatase, non-receptor type 3 Ptpn3 362524 XM_001055793 /// XM_001059757 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0045930 // negative regulation of mitotic cell cycle // inferred from electronic annotation /// 0051045 // negative regulation of membrane protein ectodomain proteolysis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0019898 // extrinsic to membrane // inferred from electronic annotation 0001784 // phosphotyrosine binding // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0051117 // ATPase binding // inferred from electronic annotation 1376538_at AI228567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228567 /DB_XREF=gi:3812454 /DB_XREF=EST225262 /CLONE=RBRCW56 /FEA=EST /CNT=5 /TID=Rn.24576.1 /TIER=ConsEnd /STK=5 /UG=Rn.24576 /UG_TITLE=ESTs AI228567 BTB (POZ) domain containing 17 Btbd17 303660 NM_001134534 0005515 // protein binding // inferred from electronic annotation 1376539_at AW529740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529740 /DB_XREF=gi:7172154 /DB_XREF=UI-R-BU0-amr-g-07-0-UI.s1 /CLONE=UI-R-BU0-amr-g-07-0-UI /FEA=EST /CNT=5 /TID=Rn.47295.1 /TIER=ConsEnd /STK=5 /UG=Rn.47295 /UG_TITLE=ESTs, Weakly similar to SM4F RAT SEMAPHORIN 4F PRECURSOR (R.norvegicus) AW529740 1376540_at BE105373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105373 /DB_XREF=gi:8497475 /DB_XREF=UI-R-BO1-asn-a-06-0-UI.s1 /CLONE=UI-R-BO1-asn-a-06-0-UI /FEA=EST /CNT=5 /TID=Rn.49488.1 /TIER=ConsEnd /STK=5 /UG=Rn.49488 /UG_TITLE=ESTs BE105373 1376541_at BE107840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107840 /DB_XREF=gi:8499945 /DB_XREF=UI-R-CA0-awx-e-02-0-UI.s1 /CLONE=UI-R-CA0-awx-e-02-0-UI /FEA=EST /CNT=5 /TID=Rn.51312.1 /TIER=ConsEnd /STK=5 /UG=Rn.51312 /UG_TITLE=ESTs BE107840 1376542_at BF394843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394843 /DB_XREF=gi:11379801 /DB_XREF=UI-R-CA0-bfz-e-12-0-UI.s1 /CLONE=UI-R-CA0-bfz-e-12-0-UI /FEA=EST /CNT=5 /TID=Rn.61212.1 /TIER=ConsEnd /STK=5 /UG=Rn.61212 /UG_TITLE=ESTs BF394843 Golgi integral membrane protein 4 Golim4 310526 NM_001191567 /// XM_001062460 /// XM_001062524 /// XM_001070329 /// XM_002725982 /// XM_002729046 /// XM_227268 0006810 // transport // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 1376543_at BF404136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404136 /DB_XREF=gi:11392111 /DB_XREF=UI-R-CA1-biw-h-24-0-UI.s1 /CLONE=UI-R-CA1-biw-h-24-0-UI /FEA=EST /CNT=5 /TID=Rn.62552.1 /TIER=ConsEnd /STK=5 /UG=Rn.62552 /UG_TITLE=ESTs BF404136 1376544_at BF414624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414624 /DB_XREF=gi:11402613 /DB_XREF=UI-R-CA0-bpb-h-08-0-UI.s1 /CLONE=UI-R-CA0-bpb-h-08-0-UI /FEA=EST /CNT=5 /TID=Rn.62584.1 /TIER=ConsEnd /STK=5 /UG=Rn.62584 /UG_TITLE=ESTs BF414624 1376545_at BF394077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394077 /DB_XREF=gi:11378941 /DB_XREF=UI-R-CA0-bgy-h-01-0-UI.s1 /CLONE=UI-R-CA0-bgy-h-01-0-UI /FEA=EST /CNT=5 /TID=Rn.62894.1 /TIER=ConsEnd /STK=5 /UG=Rn.62894 /UG_TITLE=ESTs BF394077 1376546_at BE120498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120498 /DB_XREF=gi:8512603 /DB_XREF=UI-R-CA0-bat-b-08-0-UI.s1 /CLONE=UI-R-CA0-bat-b-08-0-UI /FEA=EST /CNT=5 /TID=Rn.43893.1 /TIER=ConsEnd /STK=5 /UG=Rn.43893 /UG_TITLE=ESTs BE120498 similar to hypothetical protein RGD1565432 499157 XM_001080929 /// XM_574455 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030868 // smooth endoplasmic reticulum membrane // inferred from electronic annotation 1376547_at BF407382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407382 /DB_XREF=gi:11395357 /DB_XREF=UI-R-BJ2-bqd-d-06-0-UI.s1 /CLONE=UI-R-BJ2-bqd-d-06-0-UI /FEA=EST /CNT=5 /TID=Rn.48126.1 /TIER=ConsEnd /STK=5 /UG=Rn.48126 /UG_TITLE=ESTs BF407382 1376548_at BE099685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099685 /DB_XREF=gi:8491564 /DB_XREF=UI-R-BJ1-atk-b-06-0-UI.s1 /CLONE=UI-R-BJ1-atk-b-06-0-UI /FEA=EST /CNT=5 /TID=Rn.48612.1 /TIER=ConsEnd /STK=5 /UG=Rn.48612 /UG_TITLE=ESTs, Weakly similar to S68418 protein phosphatase 1M chain M110 isoform - rat (R.norvegicus) BE099685 Protein phosphatase 1, regulatory (inhibitor) subunit 12C Ppp1r12c 499076 NM_001191946 /// XM_001071078 /// XM_574359 1376549_at BF394116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394116 /DB_XREF=gi:11378980 /DB_XREF=UI-R-CA0-bgz-f-04-0-UI.s1 /CLONE=UI-R-CA0-bgz-f-04-0-UI /FEA=EST /CNT=5 /TID=Rn.57293.1 /TIER=ConsEnd /STK=5 /UG=Rn.57293 /UG_TITLE=ESTs BF394116 1376550_at BF405084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405084 /DB_XREF=gi:11393059 /DB_XREF=UI-R-CA1-bip-d-09-0-UI.s1 /CLONE=UI-R-CA1-bip-d-09-0-UI /FEA=EST /CNT=5 /TID=Rn.58248.1 /TIER=ConsEnd /STK=5 /UG=Rn.58248 /UG_TITLE=ESTs BF405084 1376551_at BF392424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392424 /DB_XREF=gi:11377281 /DB_XREF=UI-R-CA0-bfj-a-10-0-UI.s1 /CLONE=UI-R-CA0-bfj-a-10-0-UI /FEA=EST /CNT=5 /TID=Rn.59770.1 /TIER=ConsEnd /STK=5 /UG=Rn.59770 /UG_TITLE=ESTs BF392424 1376552_at BI297651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297651 /DB_XREF=gi:14973931 /DB_XREF=UI-R-CV2-cgy-g-01-0-UI.s1 /CLONE=UI-R-CV2-cgy-g-01-0-UI /FEA=EST /CNT=5 /TID=Rn.66271.1 /TIER=ConsEnd /STK=5 /UG=Rn.66271 /UG_TITLE=ESTs BI297651 1376553_at BI284353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284353 /DB_XREF=gi:14936953 /DB_XREF=UI-R-CX0s-cco-b-09-0-UI.s1 /CLONE=UI-R-CX0s-cco-b-09-0-UI /FEA=EST /CNT=5 /TID=Rn.14632.1 /TIER=ConsEnd /STK=5 /UG=Rn.14632 /UG_TITLE=ESTs, Weakly similar to END3_CAEEL Probable endonuclease III homolog (DNA-(Apurinic or apyrimidinic site) lyase) (C.elegans) BI284353 nth (endonuclease III)-like 1 (E.coli) Nthl1 29541 NM_001105728 0006281 // DNA repair // inferred from electronic annotation /// 0006284 // base-excision repair // inferred from electronic annotation /// 0006285 // base-excision repair, AP site formation // not recorded /// 0006296 // nucleotide-excision repair, DNA incision, 5'-to lesion // not recorded /// 0045008 // depyrimidination // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005739 // mitochondrion // not recorded 0000703 // oxidized pyrimidine base lesion DNA N-glycosylase activity // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003906 // DNA-(apurinic or apyrimidinic site) lyase activity // not recorded /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019104 // DNA N-glycosylase activity // not recorded /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 1376554_at BE121079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121079 /DB_XREF=gi:8513184 /DB_XREF=UI-R-CA0-bar-g-11-0-UI.s1 /CLONE=UI-R-CA0-bar-g-11-0-UI /FEA=EST /CNT=5 /TID=Rn.7456.1 /TIER=ConsEnd /STK=5 /UG=Rn.7456 /UG_TITLE=ESTs, Weakly similar to Y218_HUMAN PUTATIVE DEOXYRIBONUCLEASE KIAA0218 (H.sapiens) BE121079 similar to TatD DNase domain containing 1 LOC690068 690068 XR_086299 1376555_at BE113184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113184 /DB_XREF=gi:8505289 /DB_XREF=UI-R-BJ1-awc-e-03-0-UI.s1 /CLONE=UI-R-BJ1-awc-e-03-0-UI /FEA=EST /CNT=5 /TID=Rn.35996.1 /TIER=ConsEnd /STK=5 /UG=Rn.35996 /UG_TITLE=ESTs BE113184 Similar to chromosome 9 open reading frame 5 RGD1308958 298020 XM_001059736 /// XM_216388 1376556_at BE111740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111740 /DB_XREF=gi:8503845 /DB_XREF=UI-R-BJ1-avx-c-06-0-UI.s1 /CLONE=UI-R-BJ1-avx-c-06-0-UI /FEA=EST /CNT=5 /TID=Rn.53904.1 /TIER=ConsEnd /STK=5 /UG=Rn.53904 /UG_TITLE=ESTs, Highly similar to FAC1 gene product (H.sapiens) BE111740 1376557_at BF393295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393295 /DB_XREF=gi:11378155 /DB_XREF=UI-R-CA0-bft-b-09-0-UI.s1 /CLONE=UI-R-CA0-bft-b-09-0-UI /FEA=EST /CNT=5 /TID=Rn.57433.1 /TIER=ConsEnd /STK=5 /UG=Rn.57433 /UG_TITLE=ESTs BF393295 1376558_at BE101628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101628 /DB_XREF=gi:8493726 /DB_XREF=UI-R-BT1-aqg-c-03-0-UI.s1 /CLONE=UI-R-BT1-aqg-c-03-0-UI /FEA=EST /CNT=5 /TID=Rn.50094.1 /TIER=ConsEnd /STK=5 /UG=Rn.50094 /UG_TITLE=ESTs BE101628 shisa homolog 7 (Xenopus laevis) Shisa7 691429 NM_001145175 1376559_at AW253884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253884 /DB_XREF=gi:6597475 /DB_XREF=UI-R-BJ0-aec-e-05-0-UI.s1 /CLONE=UI-R-BJ0-aec-e-05-0-UI /FEA=EST /CNT=5 /TID=Rn.41248.1 /TIER=ConsEnd /STK=5 /UG=Rn.41248 /UG_TITLE=ESTs, Highly similar to RPIA MOUSE RIBOSE 5-PHOSPHATE ISOMERASE (M.musculus) AW253884 Ribose 5-phosphate isomerase A Rpia 362383 NM_001108632 0006098 // pentose-phosphate shunt // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0009052 // pentose-phosphate shunt, non-oxidative branch // inferred from direct assay /// 0009052 // pentose-phosphate shunt, non-oxidative branch // inferred from electronic annotation /// 0019693 // ribose phosphate metabolic process // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // not recorded 0004751 // ribose-5-phosphate isomerase activity // inferred from direct assay /// 0004751 // ribose-5-phosphate isomerase activity // inferred from electronic annotation /// 0004751 // ribose-5-phosphate isomerase activity // not recorded /// 0005529 // sugar binding // inferred from direct assay /// 0016853 // isomerase activity // inferred from electronic annotation /// 0048029 // monosaccharide binding // inferred from direct assay 1376560_at BM388282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388282 /DB_XREF=gi:18188335 /DB_XREF=UI-R-DM1-cjz-o-20-0-UI.s1 /CLONE=UI-R-DM1-cjz-o-20-0-UI /FEA=EST /CNT=5 /TID=Rn.77615.1 /TIER=ConsEnd /STK=5 /UG=Rn.77615 /UG_TITLE=ESTs, Highly similar to T46419 hypothetical protein DKFZp434K0423.1 (H.sapiens) BM388282 1376561_at AW523739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523739 /DB_XREF=gi:7166124 /DB_XREF=UI-R-BO0-aih-e-11-0-UI.s1 /CLONE=UI-R-BO0-aih-e-11-0-UI /FEA=EST /CNT=5 /TID=Rn.11729.1 /TIER=ConsEnd /STK=5 /UG=Rn.11729 /UG_TITLE=ESTs AW523739 F-box protein 16 Fbxo16 305970 NM_001013132 1376562_at BI291396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291396 /DB_XREF=gi:14950901 /DB_XREF=UI-R-CV2-cgp-f-06-0-UI.s1 /CLONE=UI-R-CV2-cgp-f-06-0-UI /FEA=EST /CNT=5 /TID=Rn.68107.1 /TIER=ConsEnd /STK=5 /UG=Rn.68107 /UG_TITLE=ESTs, Moderately similar to mitogen-activated protein kinase kinase kinase kinase 4; NCK interacting kinase; HPKGCK-like kinase (Mus musculus) (M.musculus) BI291396 TRAF2 and NCK interacting kinase Tnik 294917 NM_001106422 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006950 // response to stress // not recorded /// 0007010 // cytoskeleton organization // not recorded /// 0007243 // intracellular protein kinase cascade // not recorded /// 0007256 // activation of JNKK activity // not recorded /// 0046777 // protein autophosphorylation // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1376563_at BG375165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375165 /DB_XREF=gi:13299637 /DB_XREF=UI-R-CV1-bsx-h-05-0-UI.s1 /CLONE=UI-R-CV1-bsx-h-05-0-UI /FEA=EST /CNT=5 /TID=Rn.79907.1 /TIER=ConsEnd /STK=5 /UG=Rn.79907 /UG_TITLE=ESTs BG375165 1376564_at AW527595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527595 /DB_XREF=gi:7170009 /DB_XREF=UI-R-BT1-ajz-a-11-0-UI.s1 /CLONE=UI-R-BT1-ajz-a-11-0-UI /FEA=EST /CNT=5 /TID=Rn.46588.1 /TIER=ConsEnd /STK=5 /UG=Rn.46588 /UG_TITLE=ESTs AW527595 spectrin, beta, non-erythrocytic 4 Sptbn4 308458 XM_001072073 /// XM_218364 0007409 // axonogenesis // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0007628 // adult walking behavior // not recorded /// 0009566 // fertilization // not recorded /// 0019226 // transmission of nerve impulse // not recorded /// 0030534 // adult behavior // not recorded /// 0040018 // positive regulation of multicellular organism growth // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0008091 // spectrin // inferred from electronic annotation /// 0008091 // spectrin // not recorded /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded /// 0016605 // PML body // inferred from electronic annotation /// 0016605 // PML body // not recorded /// 0030424 // axon // not recorded /// 0043203 // axon hillock // not recorded /// 0070852 // cell body fiber // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030506 // ankyrin binding // inferred from electronic annotation /// 0030506 // ankyrin binding // not recorded 1376565_at AI029179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029179 /DB_XREF=gi:4296767 /DB_XREF=UI-R-C0-iv-g-10-0-UI.s1 /CLONE=UI-R-C0-iv-g-10-0-UI /FEA=EST /CNT=5 /TID=Rn.23330.1 /TIER=ConsEnd /STK=5 /UG=Rn.23330 /UG_TITLE=ESTs AI029179 Phosphodiesterase 4A, cAMP-specific (phosphodiesterase E2 dunce homolog, Drosophila) Pde4a 25638 NM_013101 0006198 // cAMP catabolic process // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from direct assay /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376566_at BE109552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109552 /DB_XREF=gi:8501657 /DB_XREF=UI-R-BJ1-avp-e-03-0-UI.s1 /CLONE=UI-R-BJ1-avp-e-03-0-UI /FEA=EST /CNT=5 /TID=Rn.51983.1 /TIER=ConsEnd /STK=5 /UG=Rn.51983 /UG_TITLE=ESTs BE109552 1376567_at AI044868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044868 /DB_XREF=gi:3291687 /DB_XREF=UI-R-C1-kd-e-09-0-UI.s1 /CLONE=UI-R-C1-kd-e-09-0-UI /FEA=EST /CNT=5 /TID=Rn.16044.1 /TIER=ConsEnd /STK=5 /UG=Rn.16044 /UG_TITLE=ESTs AI044868 MAD1 mitotic arrest deficient-like 1 (yeast) Mad1l1 680006 NM_001109387 0000776 // kinetochore // not recorded /// 0005643 // nuclear pore // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded 1376568_at AI144997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144997 /DB_XREF=gi:3666796 /DB_XREF=UI-R-BT0-pr-a-07-0-UI.s1 /CLONE=UI-R-BT0-pr-a-07-0-UI /FEA=EST /CNT=5 /TID=Rn.38765.1 /TIER=ConsEnd /STK=5 /UG=Rn.38765 /UG_TITLE=ESTs AI144997 1376569_at BM385790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385790 /DB_XREF=gi:18185843 /DB_XREF=UI-R-CN1-clx-j-08-0-UI.s1 /CLONE=UI-R-CN1-clx-j-08-0-UI /FEA=EST /CNT=30 /TID=Rn.18297.1 /TIER=ConsEnd /STK=4 /UG=Rn.18297 /UG_TITLE=ESTs, Moderately similar to CPBP RAT CORE PROMOTER ELEMENT-BINDING PROTEIN (R.norvegicus) BM385790 Kruppel-like factor 2 (lung) Klf2 306330 NM_001007684 0006350 // transcription // inferred from electronic annotation /// 0032715 // negative regulation of interleukin-6 production // inferred from mutant phenotype /// 0034616 // response to laminar fluid shear stress // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from mutant phenotype /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0070301 // cellular response to hydrogen peroxide // inferred from expression pattern /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1376570_at BF417274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417274 /DB_XREF=gi:11405263 /DB_XREF=UI-R-CN0-bky-b-03-0-UI.s1 /CLONE=UI-R-CN0-bky-b-03-0-UI /FEA=EST /CNT=16 /TID=Rn.2194.1 /TIER=ConsEnd /STK=4 /UG=Rn.2194 /UG_TITLE=ESTs, Weakly similar to T-COMPLEX PROTEIN 1, ALPHA SUBUNIT (R.norvegicus) BF417274 chaperonin containing Tcp1, subunit 5 (epsilon) Cct5 294864 NM_001004078 0006457 // protein folding // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0009615 // response to virus // not recorded /// 0044267 // cellular protein metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005832 // chaperonin-containing T-complex // inferred from electronic annotation /// 0005832 // chaperonin-containing T-complex // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1376571_at BI285997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285997 /DB_XREF=gi:14940206 /DB_XREF=UI-R-CX0s-ccu-c-06-0-UI.s1 /CLONE=UI-R-CX0s-ccu-c-06-0-UI /FEA=EST /CNT=21 /TID=Rn.22379.1 /TIER=ConsEnd /STK=4 /UG=Rn.22379 /UG_TITLE=ESTs BI285997 transmembrane protein 42 Tmem42 363171 NM_001191886 /// XM_001078553 /// XM_002729984 /// XM_343510 0016021 // integral to membrane // inferred from electronic annotation 1376572_a_at AI045848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045848 /DB_XREF=gi:3292667 /DB_XREF=UI-R-C1-km-c-11-0-UI.s1 /CLONE=UI-R-C1-km-c-11-0-UI /FEA=EST /CNT=1 /TID=Rn.36337.3 /TIER=ConsEnd /STK=1 /UG=Rn.36337 /UG_TITLE=ESTs, Weakly similar to VIL1 MOUSE VILLIN (M.musculus) AI045848 0007010 // cytoskeleton organization // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation 1376573_at BM391604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391604 /DB_XREF=gi:18191657 /DB_XREF=UI-R-DY0-ckr-l-13-0-UI.s1 /CLONE=UI-R-DY0-ckr-l-13-0-UI /FEA=EST /CNT=21 /TID=Rn.11546.1 /TIER=ConsEnd /STK=4 /UG=Rn.11546 /UG_TITLE=ESTs, Weakly similar to GTP-binding protein rab1B (R.norvegicus) BM391604 RAB34, member RAS oncogene family Rab34 360571 NM_001012140 0006184 // GTP catabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0006897 // endocytosis // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0001726 // ruffle // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // not recorded 1376574_at BI282932 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282932 /DB_XREF=gi:14934187 /DB_XREF=UI-R-CW0s-ccf-a-09-0-UI.s1 /CLONE=UI-R-CW0s-ccf-a-09-0-UI /FEA=EST /CNT=16 /TID=Rn.17490.1 /TIER=ConsEnd /STK=4 /UG=Rn.17490 /UG_TITLE=ESTs BI282932 1376575_at BI302686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302686 /DB_XREF=gi:14978966 /DB_XREF=UI-R-DO0-cix-j-06-0-UI.s1 /CLONE=UI-R-DO0-cix-j-06-0-UI /FEA=EST /CNT=13 /TID=Rn.8466.1 /TIER=ConsEnd /STK=4 /UG=Rn.8466 /UG_TITLE=ESTs BI302686 twisted gastrulation homolog 1 (Drosophila) Twsg1 363294 NM_001108811 0001503 // ossification // not recorded /// 0001707 // mesoderm formation // not recorded /// 0007435 // salivary gland morphogenesis // not recorded /// 0009790 // embryo development // not recorded /// 0009888 // tissue development // not recorded /// 0030097 // hemopoiesis // not recorded /// 0030154 // cell differentiation // not recorded /// 0030509 // BMP signaling pathway // not recorded /// 0030513 // positive regulation of BMP signaling pathway // not recorded /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0030900 // forebrain development // not recorded /// 0043010 // camera-type eye development // not recorded /// 0045668 // negative regulation of osteoblast differentiation // not recorded 0005615 // extracellular space // not recorded 0005515 // protein binding // not recorded 1376576_at BM387750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387750 /DB_XREF=gi:18187803 /DB_XREF=UI-R-CN1-cjk-a-10-0-UI.s1 /CLONE=UI-R-CN1-cjk-a-10-0-UI /FEA=EST /CNT=12 /TID=Rn.24649.1 /TIER=ConsEnd /STK=4 /UG=Rn.24649 /UG_TITLE=ESTs, Weakly similar to MCE1 MOUSE MRNA CAPPING ENZYME (M.musculus) BM387750 dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) Dusp11 297412 NM_001025650 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1376577_at AI145247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145247 /DB_XREF=gi:3667046 /DB_XREF=UI-R-BT0-qf-d-05-0-UI.s1 /CLONE=UI-R-BT0-qf-d-05-0-UI /FEA=EST /CNT=12 /TID=Rn.13167.1 /TIER=ConsEnd /STK=4 /UG=Rn.13167 /UG_TITLE=ESTs AI145247 1376578_at BM389055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389055 /DB_XREF=gi:18189108 /DB_XREF=UI-R-DZ0-cko-h-15-0-UI.s1 /CLONE=UI-R-DZ0-cko-h-15-0-UI /FEA=EST /CNT=12 /TID=Rn.7645.1 /TIER=ConsEnd /STK=4 /UG=Rn.7645 /UG_TITLE=ESTs BM389055 euchromatic histone-lysine N-methyltransferase 1 Ehmt1 362078 NM_001108572 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016568 // chromatin modification // not recorded /// 0016571 // histone methylation // not recorded 0005634 // nucleus // inferred from electronic annotation 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008168 // methyltransferase activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // not recorded 1376579_at AA945172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945172 /DB_XREF=gi:4132513 /DB_XREF=EST200671 /CLONE=RLIAH47 /FEA=EST /CNT=17 /TID=Rn.7611.1 /TIER=ConsEnd /STK=4 /UG=Rn.7611 /UG_TITLE=ESTs, Highly similar to AMPL_HUMAN CYTOSOL AMINOPEPTIDASE (LEUCINE AMINOPEPTIDASE) (LAP) (LEUCYL AMINOPEPTIDASE) (PROLINE AMINOPEPTIDASE) (PROLYL AMINOPEPTIDASE) (H.sapiens) AA945172 leucine aminopeptidase 3 Lap3 289668 NM_001011910 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0019538 // protein metabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008235 // metalloexopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376580_at BG375952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375952 /DB_XREF=gi:13300424 /DB_XREF=UI-R-CU0-bur-e-11-0-UI.s1 /CLONE=UI-R-CU0-bur-e-11-0-UI /FEA=EST /CNT=15 /TID=Rn.13133.1 /TIER=ConsEnd /STK=4 /UG=Rn.13133 /UG_TITLE=ESTs, Highly similar to FRDA MOUSE FRATAXIN PRECURSOR (M.musculus) BG375952 frataxin Fxn 499335 NM_001191952 /// XM_001078791 /// XM_574642 0006119 // oxidative phosphorylation // not recorded /// 0006783 // heme biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006826 // iron ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // not recorded /// 0006879 // cellular iron ion homeostasis // non-traceable author statement /// 0007005 // mitochondrion organization // not recorded /// 0007628 // adult walking behavior // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0009060 // aerobic respiration // not recorded /// 0009792 // embryo development ending in birth or egg hatching // not recorded /// 0010039 // response to iron ion // not recorded /// 0010722 // regulation of ferrochelatase activity // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016226 // iron-sulfur cluster assembly // not recorded /// 0016540 // protein autoprocessing // not recorded /// 0018283 // iron incorporation into metallo-sulfur cluster // not recorded /// 0019230 // proprioception // not recorded /// 0030307 // positive regulation of cell growth // not recorded /// 0040015 // negative regulation of multicellular organism growth // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045773 // positive regulation of axon extension // inferred from mutant phenotype /// 0046621 // negative regulation of organ growth // not recorded /// 0048554 // positive regulation of metalloenzyme activity // not recorded /// 0051347 // positive regulation of transferase activity // not recorded /// 0051349 // positive regulation of lyase activity // not recorded /// 0051353 // positive regulation of oxidoreductase activity // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded /// 0008198 // ferrous iron binding // not recorded /// 0008199 // ferric iron binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016530 // metallochaperone activity // non-traceable author statement /// 0019899 // enzyme binding // inferred from physical interaction /// 0034986 // iron chaperone activity // not recorded /// 0051536 // iron-sulfur cluster binding // not recorded /// 0051537 // 2 iron, 2 sulfur cluster binding // not recorded 1376581_at AW433895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433895 /DB_XREF=gi:6965202 /DB_XREF=UI-R-BJ0p-afm-h-02-0-UI.s1 /CLONE=UI-R-BJ0p-afm-h-02-0-UI /FEA=EST /CNT=13 /TID=Rn.24099.1 /TIER=ConsEnd /STK=4 /UG=Rn.24099 /UG_TITLE=ESTs AW433895 similar to hypothetical protein MGC9912 RGD1309138 366619 NM_001108981 0019478 // D-amino acid catabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation 1376582_at BE108373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108373 /DB_XREF=gi:8500478 /DB_XREF=UI-R-BS1-ayv-e-08-0-UI.s1 /CLONE=UI-R-BS1-ayv-e-08-0-UI /FEA=EST /CNT=13 /TID=Rn.4262.1 /TIER=ConsEnd /STK=4 /UG=Rn.4262 /UG_TITLE=ESTs BE108373 mediator complex subunit 1 Med1 497991 NM_001134361 0001701 // in utero embryonic development // not recorded /// 0001889 // liver development // not recorded /// 0001892 // embryonic placenta development // not recorded /// 0006260 // DNA replication // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006590 // thyroid hormone generation // not recorded /// 0006702 // androgen biosynthetic process // not recorded /// 0007275 // multicellular organismal development // not recorded /// 0007420 // brain development // not recorded /// 0007507 // heart development // not recorded /// 0007595 // lactation // not recorded /// 0009887 // organ morphogenesis // not recorded /// 0030518 // steroid hormone receptor signaling pathway // not recorded /// 0030521 // androgen receptor signaling pathway // not recorded /// 0033601 // positive regulation of mammary gland epithelial cell proliferation // not recorded /// 0035050 // embryonic heart tube development // not recorded /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0035162 // embryonic hemopoiesis // not recorded /// 0043010 // camera-type eye development // not recorded /// 0045444 // fat cell differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060744 // mammary gland branching involved in thelarche // not recorded /// 0060745 // mammary gland branching involved in pregnancy // not recorded /// 0060750 // epithelial cell proliferation involved in mammary gland duct elongation // not recorded 0005634 // nucleus // not recorded /// 0016592 // mediator complex // inferred from electronic annotation /// 0016592 // mediator complex // not recorded 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003712 // transcription cofactor activity // not recorded /// 0003713 // transcription coactivator activity // not recorded /// 0004872 // receptor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation /// 0016455 // RNA polymerase II transcription mediator activity // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016922 // ligand-dependent nuclear receptor binding // not recorded /// 0030331 // estrogen receptor binding // not recorded /// 0035257 // nuclear hormone receptor binding // not recorded /// 0042809 // vitamin D receptor binding // not recorded /// 0042974 // retinoic acid receptor binding // not recorded /// 0042975 // peroxisome proliferator activated receptor binding // not recorded /// 0046966 // thyroid hormone receptor binding // not recorded 1376583_at BE095847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095847 /DB_XREF=gi:8486778 /DB_XREF=UI-R-BU0-apb-c-05-0-UI.s1 /CLONE=UI-R-BU0-apb-c-05-0-UI /FEA=EST /CNT=12 /TID=Rn.8255.1 /TIER=ConsEnd /STK=4 /UG=Rn.8255 /UG_TITLE=ESTs BE095847 1376584_at BE116408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116408 /DB_XREF=gi:8508513 /DB_XREF=UI-R-BS1-ayc-h-09-0-UI.s1 /CLONE=UI-R-BS1-ayc-h-09-0-UI /FEA=EST /CNT=12 /TID=Rn.27685.1 /TIER=ConsEnd /STK=4 /UG=Rn.27685 /UG_TITLE=ESTs BE116408 protein phosphatase 1 (formerly 2C)-like Ppm1l 310506 NM_001107681 0000165 // MAPKKK cascade // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // not recorded /// 0016311 // dephosphorylation // not recorded 0005789 // endoplasmic reticulum membrane // not recorded /// 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376585_at BF395602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395602 /DB_XREF=gi:11380572 /DB_XREF=UI-R-CM0-bjo-h-12-0-UI.s1 /CLONE=UI-R-CM0-bjo-h-12-0-UI /FEA=EST /CNT=11 /TID=Rn.3638.1 /TIER=ConsEnd /STK=4 /UG=Rn.3638 /UG_TITLE=ESTs BF395602 mitochondrial ribosomal protein L50 Mrpl50 362517 NM_001108665 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 1376586_at AI137314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137314 /DB_XREF=gi:3638091 /DB_XREF=UI-R-C2p-ol-g-03-0-UI.s1 /CLONE=UI-R-C2p-ol-g-03-0-UI /FEA=EST /CNT=11 /TID=Rn.22142.1 /TIER=ConsEnd /STK=4 /UG=Rn.22142 /UG_TITLE=ESTs AI137314 Retinol dehydrogenase 10 (all-trans) Rdh10 353252 NM_181478 0001656 // metanephros development // inferred from electronic annotation /// 0001656 // metanephros development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0002138 // retinoic acid biosynthetic process // inferred from electronic annotation /// 0002138 // retinoic acid biosynthetic process // not recorded /// 0007601 // visual perception // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008406 // gonad development // inferred from electronic annotation /// 0008406 // gonad development // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0014032 // neural crest cell development // inferred from electronic annotation /// 0014032 // neural crest cell development // not recorded /// 0031076 // embryonic camera-type eye development // inferred from electronic annotation /// 0031076 // embryonic camera-type eye development // not recorded /// 0035115 // embryonic forelimb morphogenesis // inferred from electronic annotation /// 0035115 // embryonic forelimb morphogenesis // not recorded /// 0042572 // retinol metabolic process // inferred from electronic annotation /// 0042572 // retinol metabolic process // not recorded /// 0042574 // retinal metabolic process // inferred from electronic annotation /// 0042574 // retinal metabolic process // not recorded /// 0043583 // ear development // inferred from electronic annotation /// 0043583 // ear development // not recorded /// 0043584 // nose development // inferred from electronic annotation /// 0043584 // nose development // not recorded /// 0048568 // embryonic organ development // not recorded /// 0048568 // embryonic organ development // inferred from electronic annotation /// 0048703 // embryonic viscerocranium morphogenesis // inferred from electronic annotation /// 0048703 // embryonic viscerocranium morphogenesis // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060431 // primary lung bud formation // inferred from electronic annotation /// 0060431 // primary lung bud formation // not recorded /// 0060449 // bud elongation involved in lung branching // inferred from electronic annotation /// 0060449 // bud elongation involved in lung branching // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004745 // retinol dehydrogenase activity // inferred from electronic annotation /// 0004745 // retinol dehydrogenase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1376587_at AA818128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818128 /DB_XREF=gi:4198642 /DB_XREF=UI-R-A0-am-h-08-0-UI.s1 /CLONE=UI-R-A0-am-h-08-0-UI /FEA=EST /CNT=19 /TID=Rn.36585.1 /TIER=ConsEnd /STK=4 /UG=Rn.36585 /UG_TITLE=ESTs, Highly similar to T17329 hypothetical protein DKFZp564K2364.1 (H.sapiens) AA818128 F-box protein 11 Fbxo11 301674 NM_181631 0006464 // protein modification process // not recorded /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016274 // protein-arginine N-methyltransferase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1376588_at BF284632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284632 /DB_XREF=gi:11215702 /DB_XREF=EST449223 /CLONE=RGIEU16 /FEA=EST /CNT=14 /TID=Rn.6483.1 /TIER=ConsEnd /STK=4 /UG=Rn.6483 /UG_TITLE=ESTs BF284632 1376589_at BG380345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380345 /DB_XREF=gi:13304817 /DB_XREF=UI-R-CT0-btw-a-09-0-UI.s1 /CLONE=UI-R-CT0-btw-a-09-0-UI /FEA=EST /CNT=14 /TID=Rn.17253.2 /TIER=ConsEnd /STK=4 /UG=Rn.17253 /UG_TITLE=ESTs, Weakly similar to T03G11.6.p (Caenorhabditis elegans) (C.elegans) BG380345 methyltransferase like 9 Mettl9 100302453 NM_001163164 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1376590_at AA818732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818732 /DB_XREF=gi:4227412 /DB_XREF=UI-R-A0-ay-g-07-0-UI.s1 /CLONE=UI-R-A0-ay-g-07-0-UI /FEA=EST /CNT=13 /TID=Rn.17606.1 /TIER=ConsEnd /STK=4 /UG=Rn.17606 /UG_TITLE=ESTs AA818732 1376591_a_at AA800172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800172 /DB_XREF=gi:4131473 /DB_XREF=EST189669 /CLONE=RHEAM05 /FEA=EST /CNT=13 /TID=Rn.3354.1 /TIER=ConsEnd /STK=4 /UG=Rn.3354 /UG_TITLE=ESTs AA800172 transmembrane protein 179B Tmem179b 690263 NM_001109572 1376592_at BG379780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379780 /DB_XREF=gi:13304257 /DB_XREF=UI-R-CS0-btn-b-11-0-UI.s1 /CLONE=UI-R-CS0-btn-b-11-0-UI /FEA=EST /CNT=13 /TID=Rn.3420.1 /TIER=ConsEnd /STK=4 /UG=Rn.3420 /UG_TITLE=ESTs, Weakly similar to B.subtilis YQJC protein like (Caenorhabditis elegans) (C.elegans) BG379780 methylmalonyl CoA epimerase Mcee 293829 NM_001106341 0046491 // L-methylmalonyl-CoA metabolic process // not recorded 0005739 // mitochondrion // not recorded 0004493 // methylmalonyl-CoA epimerase activity // not recorded 1376593_at BF283990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283990 /DB_XREF=gi:11215060 /DB_XREF=EST448581 /CLONE=RGIEJ63 /FEA=EST /CNT=13 /TID=Rn.12150.1 /TIER=ConsEnd /STK=4 /UG=Rn.12150 /UG_TITLE=ESTs BF283990 1376594_at AW524517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524517 /DB_XREF=gi:7166902 /DB_XREF=UI-R-BO0-ahz-d-03-0-UI.s1 /CLONE=UI-R-BO0-ahz-d-03-0-UI /FEA=EST /CNT=12 /TID=Rn.7696.1 /TIER=ConsEnd /STK=4 /UG=Rn.7696 /UG_TITLE=ESTs, Weakly similar to neurofilament triplet H protein (R.norvegicus) AW524517 vascular endothelial zinc finger 1 Vezf1 287615 XM_001081191 /// XM_213421 0001525 // angiogenesis // not recorded /// 0001885 // endothelial cell development // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1376595_at BF282695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282695 /DB_XREF=gi:11213765 /DB_XREF=EST447286 /CLONE=RGIDR79 /FEA=EST /CNT=12 /TID=Rn.13500.1 /TIER=ConsEnd /STK=4 /UG=Rn.13500 /UG_TITLE=ESTs, Moderately similar to peroxisome biogenesis disorder protein 1 (H.sapiens) BF282695 peroxisomal biogenesis factor 1 Pex1 500006 NM_001109220 0006625 // protein targeting to peroxisome // not recorded /// 0007031 // peroxisome organization // inferred from electronic annotation /// 0007031 // peroxisome organization // not recorded /// 0016558 // protein import into peroxisome matrix // not recorded /// 0060152 // microtubule-based peroxisome localization // not recorded 0005737 // cytoplasm // not recorded /// 0005777 // peroxisome // inferred from electronic annotation /// 0005777 // peroxisome // not recorded /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0032403 // protein complex binding // not recorded /// 0042623 // ATPase activity, coupled // not recorded 1376596_at BI295847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295847 /DB_XREF=gi:14959704 /DB_XREF=UI-R-DK0-cfb-d-03-0-UI.s1 /CLONE=UI-R-DK0-cfb-d-03-0-UI /FEA=EST /CNT=12 /TID=Rn.25109.1 /TIER=ConsEnd /STK=4 /UG=Rn.25109 /UG_TITLE=ESTs BI295847 DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 Ddx42 303607 NM_001107059 0008104 // protein localization // not recorded /// 0045767 // regulation of anti-apoptosis // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1376597_at AI100951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI100951 /DB_XREF=gi:3705964 /DB_XREF=EST210240 /CLONE=RBRBD35 /FEA=EST /CNT=11 /TID=Rn.13870.1 /TIER=ConsEnd /STK=4 /UG=Rn.13870 /UG_TITLE=ESTs AI100951 zinc finger, CCHC domain containing 10 Zcchc10 360524 XM_001073035 /// XM_346887 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376598_at AI179993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179993 /DB_XREF=gi:3730631 /DB_XREF=EST223724 /CLONE=RSPCO63 /FEA=EST /CNT=11 /TID=Rn.13768.1 /TIER=ConsEnd /STK=4 /UG=Rn.13768 /UG_TITLE=ESTs AI179993 PAX interacting (with transcription-activation domain) protein 1 Paxip1 311944 NM_001107844 0006974 // response to DNA damage stimulus // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0035097 // histone methyltransferase complex // not recorded 0005515 // protein binding // not recorded 1376599_at AW915567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915567 /DB_XREF=gi:8081266 /DB_XREF=EST346871 /CLONE=RGICW83 /FEA=EST /CNT=11 /TID=Rn.6690.1 /TIER=ConsEnd /STK=4 /UG=Rn.6690 /UG_TITLE=ESTs AW915567 ATPase family, AAA domain containing 2 Atad2 314993 NM_001134879 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1376600_at BI289616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289616 /DB_XREF=gi:14947372 /DB_XREF=UI-R-DK0-cfi-b-01-0-UI.s1 /CLONE=UI-R-DK0-cfi-b-01-0-UI /FEA=EST /CNT=10 /TID=Rn.2868.1 /TIER=ConsEnd /STK=4 /UG=Rn.2868 /UG_TITLE=ESTs BI289616 1376601_at BF397526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397526 /DB_XREF=gi:11382509 /DB_XREF=UI-R-BS2-bez-e-04-0-UI.s1 /CLONE=UI-R-BS2-bez-e-04-0-UI /FEA=EST /CNT=10 /TID=Rn.8192.1 /TIER=ConsEnd /STK=4 /UG=Rn.8192 /UG_TITLE=ESTs BF397526 1376602_a_at AI030899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030899 /DB_XREF=gi:3248725 /DB_XREF=UI-R-C0-jf-b-12-0-UI.s1 /CLONE=UI-R-C0-jf-b-12-0-UI /FEA=EST /CNT=10 /TID=Rn.4284.1 /TIER=ConsEnd /STK=4 /UG=Rn.4284 /UG_TITLE=ESTs AI030899 F-box protein 22 Fbxo22 300724 NM_001037770 1376603_at AI169243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169243 /DB_XREF=gi:3705551 /DB_XREF=EST215078 /CLONE=RKIBP23 /FEA=EST /CNT=10 /TID=Rn.24961.1 /TIER=ConsEnd /STK=4 /UG=Rn.24961 /UG_TITLE=ESTs, Moderately similar to T34550 hypothetical protein DKFZp434E0535.1 (H.sapiens) AI169243 DDB1 and CUL4 associated factor 4 Dcaf4 362762 NM_001108716 0080008 // CUL4 RING ubiquitin ligase complex // not recorded 1376604_at AW533546 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533546 /DB_XREF=gi:7175960 /DB_XREF=UI-R-BU0-and-b-10-0-UI.s1 /CLONE=UI-R-BU0-and-b-10-0-UI /FEA=EST /CNT=10 /TID=Rn.48619.1 /TIER=ConsEnd /STK=4 /UG=Rn.48619 /UG_TITLE=ESTs, Weakly similar to VIME RAT VIMENTIN (R.norvegicus) AW533546 synemin, intermediate filament protein Synm 308709 NM_001134858 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005882 // intermediate filament // inferred from direct assay /// 0005882 // intermediate filament // not recorded /// 0005882 // intermediate filament // inferred from electronic annotation /// 0005912 // adherens junction // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0043034 // costamere // inferred from electronic annotation /// 0043034 // costamere // not recorded /// 0060053 // neurofilament cytoskeleton // inferred from electronic annotation /// 0060053 // neurofilament cytoskeleton // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008307 // structural constituent of muscle // inferred from electronic annotation /// 0008307 // structural constituent of muscle // not recorded /// 0017166 // vinculin binding // inferred from electronic annotation /// 0017166 // vinculin binding // not recorded /// 0019215 // intermediate filament binding // inferred from electronic annotation /// 0019215 // intermediate filament binding // not recorded 1376605_at AA900983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900983 /DB_XREF=gi:4233479 /DB_XREF=UI-R-E0-dj-e-02-0-UI.s1 /CLONE=UI-R-E0-dj-e-02-0-UI /FEA=EST /CNT=10 /TID=Rn.6598.1 /TIER=ConsEnd /STK=4 /UG=Rn.6598 /UG_TITLE=ESTs AA900983 solute carrier family 17 (anion/sugar transporter), member 5 Slc17a5 363103 NM_001009713 0008643 // carbohydrate transport // inferred from electronic annotation /// 0015739 // sialic acid transport // inferred from direct assay /// 0015739 // sialic acid transport // not recorded /// 0015739 // sialic acid transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005764 // lysosome // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005765 // lysosomal membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded 0015136 // sialic acid transmembrane transporter activity // inferred from direct assay /// 0015136 // sialic acid transmembrane transporter activity // not recorded /// 0015136 // sialic acid transmembrane transporter activity // inferred from electronic annotation 1376606_a_at BM387118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387118 /DB_XREF=gi:18187171 /DB_XREF=UI-R-CN1-cji-o-24-0-UI.s1 /CLONE=UI-R-CN1-cji-o-24-0-UI /FEA=EST /CNT=10 /TID=Rn.3365.1 /TIER=ConsEnd /STK=4 /UG=Rn.3365 /UG_TITLE=ESTs BM387118 enhancer of yellow 2 homolog (Drosophila) Eny2 685258 NM_001130580 0016578 // histone deubiquitination // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0000124 // SAGA complex // not recorded 0003713 // transcription coactivator activity // not recorded /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded 1376607_a_at BG380154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380154 /DB_XREF=gi:13304626 /DB_XREF=UI-R-CS0-btp-f-08-0-UI.s1 /CLONE=UI-R-CS0-btp-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.12075.3 /TIER=ConsEnd /STK=2 /UG=Rn.12075 /UG_TITLE=ESTs, Weakly similar to MK16_YEAST MAK16 protein (S.cerevisiae) BG380154 similar to hypothetical protein FLJ23263 RGD1310414 290811 NM_001013883 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008747 // N-acetylneuraminate lyase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation 1376608_at AI236535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236535 /DB_XREF=gi:3830041 /DB_XREF=EST233097 /CLONE=ROVDH34 /FEA=EST /CNT=11 /TID=Rn.19604.1 /TIER=ConsEnd /STK=4 /UG=Rn.19604 /UG_TITLE=ESTs AI236535 ring finger protein 216 Rnf216 304294 NM_001107122 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1376609_at BG672064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672064 /DB_XREF=gi:13894163 /DB_XREF=DRNCBE06 /CLONE=DRNCBE06 /FEA=EST /CNT=10 /TID=Rn.6435.1 /TIER=ConsEnd /STK=4 /UG=Rn.6435 /UG_TITLE=ESTs BG672064 similar to TRS85 homolog RGD1309102 291750 NM_001106160 0005488 // binding // inferred from electronic annotation 1376610_a_at BE109163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109163 /DB_XREF=gi:8501268 /DB_XREF=UI-R-BS1-azb-f-07-0-UI.s1 /CLONE=UI-R-BS1-azb-f-07-0-UI /FEA=EST /CNT=10 /TID=Rn.48912.1 /TIER=ConsEnd /STK=4 /UG=Rn.48912 /UG_TITLE=ESTs, Weakly similar to G02540 nucleobindin (H.sapiens) BE109163 similar to TPR repeat-containing protein KIAA1043 LOC304558 304558 XM_001080633 /// XM_222260 0005488 // binding // inferred from electronic annotation 1376611_at AI103682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103682 /DB_XREF=gi:4134194 /DB_XREF=EST212971 /CLONE=REMCF14 /FEA=EST /CNT=10 /TID=Rn.23939.1 /TIER=ConsEnd /STK=4 /UG=Rn.23939 /UG_TITLE=ESTs AI103682 polymerase (DNA directed), alpha 1 Pola1 85241 NM_053479 /// XM_001064735 /// XM_242396 0000084 // S phase of mitotic cell cycle // inferred from sequence or structural similarity /// 0000731 // DNA synthesis involved in DNA repair // inferred from sequence or structural similarity /// 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006260 // DNA replication // inferred from mutant phenotype /// 0006260 // DNA replication // inferred from sequence or structural similarity /// 0006260 // DNA replication // inferred from electronic annotation /// 0006270 // DNA-dependent DNA replication initiation // inferred from sequence or structural similarity /// 0006271 // DNA strand elongation involved in DNA replication // inferred from sequence or structural similarity /// 0006272 // leading strand elongation // inferred from sequence or structural similarity /// 0006273 // lagging strand elongation // inferred from sequence or structural similarity /// 0006281 // DNA repair // inferred from sequence or structural similarity /// 0006303 // double-strand break repair via nonhomologous end joining // inferred from sequence or structural similarity /// 0008283 // cell proliferation // inferred from sequence or structural similarity 0000785 // chromatin // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // inferred from sequence or structural similarity /// 0005658 // alpha DNA polymerase:primase complex // inferred by curator /// 0005658 // alpha DNA polymerase:primase complex // inferred from direct assay /// 0005658 // alpha DNA polymerase:primase complex // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0016363 // nuclear matrix // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from sequence or structural similarity /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0001882 // nucleoside binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003887 // DNA-directed DNA polymerase activity // inferred from direct assay /// 0003887 // DNA-directed DNA polymerase activity // inferred from mutant phenotype /// 0003887 // DNA-directed DNA polymerase activity // inferred from sequence or structural similarity /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation /// 0003896 // DNA primase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0017076 // purine nucleotide binding // inferred from mutant phenotype /// 0019103 // pyrimidine nucleotide binding // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 1376612_at BF284184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284184 /DB_XREF=gi:11215254 /DB_XREF=EST448775 /CLONE=RGIEM18 /FEA=EST /CNT=9 /TID=Rn.6448.1 /TIER=ConsEnd /STK=4 /UG=Rn.6448 /UG_TITLE=ESTs, Weakly similar to Y53C12A.3.p (Caenorhabditis elegans) (C.elegans) BF284184 DTW domain containing 1 Dtwd1 296119 NM_001013921 1376613_at BI279201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279201 /DB_XREF=gi:14926786 /DB_XREF=UI-R-DA0-byk-d-12-0-UI.s1 /CLONE=UI-R-DA0-byk-d-12-0-UI /FEA=EST /CNT=9 /TID=Rn.17188.1 /TIER=ConsEnd /STK=4 /UG=Rn.17188 /UG_TITLE=ESTs BI279201 tetratricopeptide repeat domain 9C Ttc9c 309196 NM_001007693 0006457 // protein folding // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1376614_at BF403180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403180 /DB_XREF=gi:11391155 /DB_XREF=UI-R-CA0-bhs-f-01-0-UI.s1 /CLONE=UI-R-CA0-bhs-f-01-0-UI /FEA=EST /CNT=9 /TID=Rn.52324.1 /TIER=ConsEnd /STK=4 /UG=Rn.52324 /UG_TITLE=ESTs BF403180 1376615_at BI289650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289650 /DB_XREF=gi:14947434 /DB_XREF=UI-R-DK0-cfi-e-05-0-UI.s1 /CLONE=UI-R-DK0-cfi-e-05-0-UI /FEA=EST /CNT=9 /TID=Rn.42057.1 /TIER=ConsEnd /STK=4 /UG=Rn.42057 /UG_TITLE=ESTs, Highly similar to TEF5 MOUSE TRANSCRIPTIONAL ENHANCER FACTOR TEF-5 (M.musculus) BI289650 TEA domain family member 3 Tead3 294299 NM_001098216 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0035329 // hippo signaling cascade // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation 1376616_at BF551036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551036 /DB_XREF=gi:11660766 /DB_XREF=UI-R-C0-hi-e-08-0-UI.r2 /CLONE=UI-R-C0-hi-e-08-0-UI /FEA=EST /CNT=9 /TID=Rn.13244.1 /TIER=ConsEnd /STK=4 /UG=Rn.13244 /UG_TITLE=ESTs BF551036 1376617_at BE107482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107482 /DB_XREF=gi:8499587 /DB_XREF=UI-R-BS1-ayu-c-01-0-UI.s1 /CLONE=UI-R-BS1-ayu-c-01-0-UI /FEA=EST /CNT=9 /TID=Rn.52459.1 /TIER=ConsEnd /STK=4 /UG=Rn.52459 /UG_TITLE=ESTs BE107482 1376618_at AI236218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236218 /DB_XREF=gi:4136174 /DB_XREF=EST232780 /CLONE=ROVDC82 /FEA=EST /CNT=9 /TID=Rn.19134.1 /TIER=ConsEnd /STK=4 /UG=Rn.19134 /UG_TITLE=ESTs AI236218 1376619_at AI412803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412803 /DB_XREF=gi:4256307 /DB_XREF=EST241103 /CLONE=RBRDQ30 /FEA=EST /CNT=12 /TID=Rn.7945.1 /TIER=ConsEnd /STK=4 /UG=Rn.7945 /UG_TITLE=ESTs AI412803 protein tyrosine phosphatase, receptor type, D Ptprd 313278 XM_001067936 /// XM_233065 0006470 // protein dephosphorylation // inferred from electronic annotation 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1376620_at AI137912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137912 /DB_XREF=gi:3638689 /DB_XREF=UI-R-A1-dp-h-09-0-UI.s1 /CLONE=UI-R-A1-dp-h-09-0-UI /FEA=EST /CNT=11 /TID=Rn.27531.1 /TIER=ConsEnd /STK=4 /UG=Rn.27531 /UG_TITLE=ESTs AI137912 1376621_at BM390561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390561 /DB_XREF=gi:18190614 /DB_XREF=UI-R-CN1-cjr-g-23-0-UI.s1 /CLONE=UI-R-CN1-cjr-g-23-0-UI /FEA=EST /CNT=11 /TID=Rn.23078.1 /TIER=ConsEnd /STK=4 /UG=Rn.23078 /UG_TITLE=ESTs BM390561 WD repeat domain 26 Wdr26 498301 NM_001109081 0005737 // cytoplasm // not recorded 1376622_at BM389574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389574 /DB_XREF=gi:18189627 /DB_XREF=UI-R-CN1-cjn-l-14-0-UI.s1 /CLONE=UI-R-CN1-cjn-l-14-0-UI /FEA=EST /CNT=11 /TID=Rn.6436.1 /TIER=ConsEnd /STK=4 /UG=Rn.6436 /UG_TITLE=ESTs BM389574 1376623_at AI409186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409186 /DB_XREF=gi:4252690 /DB_XREF=EST237478 /CLONE=RKIDO30 /FEA=EST /CNT=10 /TID=Rn.16780.1 /TIER=ConsEnd /STK=4 /UG=Rn.16780 /UG_TITLE=ESTs AI409186 transmembrane protein 204 Tmem204 287129 NM_001009620 0005886 // plasma membrane // inferred from electronic annotation /// 0005912 // adherens junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 1376624_at BF288208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288208 /DB_XREF=gi:11219278 /DB_XREF=EST452799 /CLONE=RGIGQ92 /FEA=EST /CNT=10 /TID=Rn.13170.1 /TIER=ConsEnd /STK=4 /UG=Rn.13170 /UG_TITLE=ESTs BF288208 1376625_at BI296015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296015 /DB_XREF=gi:14960035 /DB_XREF=UI-R-DK0-cfd-d-07-0-UI.s1 /CLONE=UI-R-DK0-cfd-d-07-0-UI /FEA=EST /CNT=10 /TID=Rn.21001.1 /TIER=ConsEnd /STK=4 /UG=Rn.21001 /UG_TITLE=ESTs BI296015 Hypothetical protein LOC691862 LOC691862 691862 XM_001079898 /// XM_001080848 1376626_at AI145815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145815 /DB_XREF=gi:3667614 /DB_XREF=UI-R-BT0-qi-g-07-0-UI.s1 /CLONE=UI-R-BT0-qi-g-07-0-UI /FEA=EST /CNT=10 /TID=Rn.22232.1 /TIER=ConsEnd /STK=4 /UG=Rn.22232 /UG_TITLE=ESTs, Weakly similar to G01614 zinc finger protein 127 (H.sapiens) AI145815 makorin ring finger protein 1 Mkrn1 296988 NM_001004233 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376627_at BF550404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550404 /DB_XREF=gi:11660134 /DB_XREF=UI-R-A1-eg-c-09-0-UI.r1 /CLONE=UI-R-A1-eg-c-09-0-UI /FEA=EST /CNT=9 /TID=Rn.24621.1 /TIER=ConsEnd /STK=4 /UG=Rn.24621 /UG_TITLE=ESTs BF550404 1376628_at AI407872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407872 /DB_XREF=gi:4251376 /DB_XREF=EST236162 /CLONE=ROVEC68 /FEA=EST /CNT=9 /TID=Rn.19954.1 /TIER=ConsEnd /STK=4 /UG=Rn.19954 /UG_TITLE=ESTs, Weakly similar to RENAL TRANSCRIPTION FACTOR KID-1 (R.norvegicus) AI407872 zinc finger protein 189 Zfp189 313219 NM_001107930 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376629_at AA946327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946327 /DB_XREF=gi:4132750 /DB_XREF=EST201826 /CLONE=RLUBD80 /FEA=EST /CNT=9 /TID=Rn.5902.1 /TIER=ConsEnd /STK=4 /UG=Rn.5902 /UG_TITLE=ESTs AA946327 1376630_at AI599509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599509 /DB_XREF=gi:4608557 /DB_XREF=EST251212 /CLONE=REMDZ27 /FEA=EST /CNT=9 /TID=Rn.13750.1 /TIER=ConsEnd /STK=4 /UG=Rn.13750 /UG_TITLE=ESTs, Weakly similar to SYTC_HUMAN THREONYL-TRNA SYNTHETASE, CYTOPLASMIC (H.sapiens) AI599509 threonyl-tRNA synthetase-like 2 /// TM2 domain containing 3 Tarsl2 /// Tm2d3 292995 /// 308701 NM_001014020 /// NM_001106267 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006435 // threonyl-tRNA aminoacylation // inferred from electronic annotation /// 0043039 // tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004829 // threonine-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016876 // ligase activity, forming aminoacyl-tRNA and related compounds // inferred from electronic annotation 1376631_at BF283675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283675 /DB_XREF=gi:11214745 /DB_XREF=EST448266 /CLONE=RGIEF35 /FEA=EST /CNT=9 /TID=Rn.18550.1 /TIER=ConsEnd /STK=4 /UG=Rn.18550 /UG_TITLE=ESTs BF283675 1376632_at AI602501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602501 /DB_XREF=gi:4611662 /DB_XREF=UI-R-AG0-xa-f-04-0-UI.s1 /CLONE=UI-R-AG0-xa-f-04-0-UI /FEA=EST /CNT=9 /TID=Rn.20476.1 /TIER=ConsEnd /STK=4 /UG=Rn.20476 /UG_TITLE=ESTs, Weakly similar to TESTIN 2 (M.musculus) AI602501 LIM and cysteine-rich domains 1 Lmcd1 494021 NM_001008562 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0010611 // regulation of cardiac muscle hypertrophy // inferred from electronic annotation /// 0010611 // regulation of cardiac muscle hypertrophy // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0070886 // positive regulation of calcineurin-NFAT signaling pathway // inferred from electronic annotation /// 0070886 // positive regulation of calcineurin-NFAT signaling pathway // not recorded 0005615 // extracellular space // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0031012 // extracellular matrix // not recorded 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376633_at AW529927 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529927 /DB_XREF=gi:7172341 /DB_XREF=UI-R-BO1-ajq-h-03-0-UI.s1 /CLONE=UI-R-BO1-ajq-h-03-0-UI /FEA=EST /CNT=9 /TID=Rn.17424.1 /TIER=ConsEnd /STK=4 /UG=Rn.17424 /UG_TITLE=ESTs AW529927 1376634_a_at BE109067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109067 /DB_XREF=gi:8501172 /DB_XREF=UI-R-BS1-azc-f-02-0-UI.s1 /CLONE=UI-R-BS1-azc-f-02-0-UI /FEA=EST /CNT=9 /TID=Rn.34509.1 /TIER=ConsEnd /STK=4 /UG=Rn.34509 /UG_TITLE=ESTs, Highly similar to T46457 hypothetical protein DKFZp434L032.1 (H.sapiens) BE109067 similar to Protein C12orf11 (Sarcoma antigen NY-SAR-95) LOC690728 690728 NM_001109608 0007346 // regulation of mitotic cell cycle // not recorded 0005515 // protein binding // not recorded 1376635_at BF283341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283341 /DB_XREF=gi:11214411 /DB_XREF=EST447932 /CLONE=RGIEA66 /FEA=EST /CNT=8 /TID=Rn.26865.1 /TIER=ConsEnd /STK=4 /UG=Rn.26865 /UG_TITLE=ESTs BF283341 1376636_at BE111972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111972 /DB_XREF=gi:8504077 /DB_XREF=UI-R-BJ1-ave-b-12-0-UI.s1 /CLONE=UI-R-BJ1-ave-b-12-0-UI /FEA=EST /CNT=8 /TID=Rn.25527.1 /TIER=ConsEnd /STK=4 /UG=Rn.25527 /UG_TITLE=ESTs BE111972 transforming growth factor, beta receptor 1 Tgfbr1 29591 NM_012775 0000186 // activation of MAPKK activity // inferred from electronic annotation /// 0000186 // activation of MAPKK activity // not recorded /// 0001501 // skeletal system development // not recorded /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0001824 // blastocyst development // inferred from electronic annotation /// 0001824 // blastocyst development // not recorded /// 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007566 // embryo implantation // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008354 // germ cell migration // inferred from electronic annotation /// 0008354 // germ cell migration // not recorded /// 0009636 // response to toxin // inferred from expression pattern /// 0009790 // embryo development // inferred from expression pattern /// 0009790 // embryo development // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016310 // phosphorylation // not recorded /// 0018105 // peptidyl-serine phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0018107 // peptidyl-threonine phosphorylation // inferred from electronic annotation /// 0018107 // peptidyl-threonine phosphorylation // not recorded /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0030199 // collagen fibril organization // not recorded /// 0030307 // positive regulation of cell growth // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // not recorded /// 0030324 // lung development // inferred from expression pattern /// 0031100 // organ regeneration // inferred from expression pattern /// 0034695 // response to prostaglandin E stimulus // inferred from expression pattern /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045602 // negative regulation of endothelial cell differentiation // inferred from mutant phenotype /// 0045885 // positive regulation of survival gene product expression // inferred from electronic annotation /// 0045885 // positive regulation of survival gene product expression // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0046777 // protein autophosphorylation // inferred from mutant phenotype /// 0048538 // thymus development // inferred from electronic annotation /// 0048538 // thymus development // not recorded /// 0048565 // digestive tract development // inferred from expression pattern /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0048701 // embryonic cranial skeleton morphogenesis // inferred from electronic annotation /// 0048701 // embryonic cranial skeleton morphogenesis // not recorded /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // not recorded /// 0048844 // artery morphogenesis // inferred from electronic annotation /// 0048844 // artery morphogenesis // not recorded /// 0048870 // cell motility // inferred from electronic annotation /// 0048870 // cell motility // not recorded /// 0051272 // positive regulation of cellular component movement // inferred from electronic annotation /// 0051272 // positive regulation of cellular component movement // not recorded /// 0051491 // positive regulation of filopodium assembly // inferred from electronic annotation /// 0051491 // positive regulation of filopodium assembly // not recorded /// 0051602 // response to electrical stimulus // inferred from expression pattern /// 0051897 // positive regulation of protein kinase B signaling cascade // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded /// 0060017 // parathyroid gland development // inferred from electronic annotation /// 0060017 // parathyroid gland development // not recorded /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded /// 0060037 // pharyngeal system development // inferred from electronic annotation /// 0060037 // pharyngeal system development // not recorded /// 0060389 // pathway-restricted SMAD protein phosphorylation // not recorded /// 0060389 // pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0060391 // positive regulation of SMAD protein nuclear translocation // inferred from electronic annotation /// 0060391 // positive regulation of SMAD protein nuclear translocation // not recorded /// 0070723 // response to cholesterol // inferred from electronic annotation /// 0070723 // response to cholesterol // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0043235 // receptor complex // not recorded /// 0043235 // receptor complex // inferred from electronic annotation /// 0044459 // plasma membrane part // not recorded /// 0044459 // plasma membrane part // inferred from electronic annotation /// 0070022 // transforming growth factor beta receptor complex // inferred by curator 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from mutant phenotype /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // not recorded /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta receptor activity // not recorded /// 0005024 // transforming growth factor beta receptor activity // inferred from electronic annotation /// 0005025 // transforming growth factor beta receptor activity, type I // inferred from mutant phenotype /// 0005025 // transforming growth factor beta receptor activity, type I // not recorded /// 0005025 // transforming growth factor beta receptor activity, type I // inferred from electronic annotation /// 0005114 // type II transforming growth factor beta receptor binding // inferred from electronic annotation /// 0005114 // type II transforming growth factor beta receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded /// 0019838 // growth factor binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction /// 0046332 // SMAD binding // not recorded /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from mutant phenotype /// 0050431 // transforming growth factor beta binding // inferred from direct assay /// 0050431 // transforming growth factor beta binding // not recorded /// 0050431 // transforming growth factor beta binding // inferred from electronic annotation /// 0070411 // I-SMAD binding // inferred from electronic annotation /// 0070411 // I-SMAD binding // not recorded 1376637_at AI102401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102401 /DB_XREF=gi:3707184 /DB_XREF=EST211690 /CLONE=RBRCD11 /FEA=EST /CNT=8 /TID=Rn.25154.1 /TIER=ConsEnd /STK=4 /UG=Rn.25154 /UG_TITLE=ESTs AI102401 1376638_at BI288798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288798 /DB_XREF=gi:14945725 /DB_XREF=UI-R-DK0-cdf-a-08-0-UI.s1 /CLONE=UI-R-DK0-cdf-a-08-0-UI /FEA=EST /CNT=8 /TID=Rn.23071.1 /TIER=ConsEnd /STK=4 /UG=Rn.23071 /UG_TITLE=ESTs BI288798 ankyrin repeat and sterile alpha motif domain containing 3 Anks3 302937 NM_001009676 1376639_at AW252111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252111 /DB_XREF=gi:6595702 /DB_XREF=UI-R-BJ0-aee-c-12-0-UI.s1 /CLONE=UI-R-BJ0-aee-c-12-0-UI /FEA=EST /CNT=8 /TID=Rn.24507.1 /TIER=ConsEnd /STK=4 /UG=Rn.24507 /UG_TITLE=ESTs AW252111 ring finger protein 126 Rnf126 314613 NM_001033702 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376640_at BF285466 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285466 /DB_XREF=gi:11216626 /DB_XREF=EST450147 /CLONE=RGIFH40 /FEA=EST /CNT=8 /TID=Rn.45776.1 /TIER=ConsEnd /STK=4 /UG=Rn.45776 /UG_TITLE=ESTs BF285466 family with sequence similarity 171, member A1 /// hypothetical protein LOC684862 Fam171a1 /// LOC684862 680259 /// 684862 XM_001056358 /// XM_001072231 1376641_at BM384228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384228 /DB_XREF=gi:18184281 /DB_XREF=UI-R-DZ0-cks-c-01-0-UI.s1 /CLONE=UI-R-DZ0-cks-c-01-0-UI /FEA=EST /CNT=8 /TID=Rn.18658.1 /TIER=ConsEnd /STK=4 /UG=Rn.18658 /UG_TITLE=ESTs, Highly similar to protein p84 (H.sapiens) BM384228 THO complex 1 Thoc1 291797 NM_001047850 0006397 // mRNA processing // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1376642_at BF548463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548463 /DB_XREF=gi:11639570 /DB_XREF=UI-R-A0-aa-g-07-0-UI.r1 /CLONE=UI-R-A0-aa-g-07-0-UI /FEA=EST /CNT=8 /TID=Rn.13596.1 /TIER=ConsEnd /STK=4 /UG=Rn.13596 /UG_TITLE=ESTs BF548463 XK, Kell blood group complex subunit-related family, member 8 Xkr8 313033 NM_001012099 1376643_at BE108146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108146 /DB_XREF=gi:8500251 /DB_XREF=UI-R-BS1-ayw-a-01-0-UI.s1 /CLONE=UI-R-BS1-ayw-a-01-0-UI /FEA=EST /CNT=8 /TID=Rn.51625.1 /TIER=ConsEnd /STK=4 /UG=Rn.51625 /UG_TITLE=ESTs BE108146 1376644_at BG380933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380933 /DB_XREF=gi:13305447 /DB_XREF=UI-R-CT0-bul-f-08-0-UI.s1 /CLONE=UI-R-CT0-bul-f-08-0-UI /FEA=EST /CNT=8 /TID=Rn.19551.1 /TIER=ConsEnd /STK=4 /UG=Rn.19551 /UG_TITLE=ESTs, Weakly similar to T15446 hypothetical protein C07G1.4 - Caenorhabditis elegans (C.elegans) BG380933 mediator complex subunit 19 Med19 311165 NM_001107741 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0016592 // mediator complex // inferred from electronic annotation /// 0016592 // mediator complex // not recorded 0005515 // protein binding // not recorded /// 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation 1376645_at AW916327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916327 /DB_XREF=gi:8082156 /DB_XREF=EST347735 /CLONE=RGIDQ04 /FEA=EST /CNT=8 /TID=Rn.14770.1 /TIER=ConsEnd /STK=4 /UG=Rn.14770 /UG_TITLE=ESTs AW916327 similar to RIKEN cDNA 6330406I15 RGD1307396 360757 XM_001059692 /// XM_341029 1376646_at BF285164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285164 /DB_XREF=gi:11216234 /DB_XREF=EST449755 /CLONE=RGIFB26 /FEA=EST /CNT=8 /TID=Rn.12330.1 /TIER=ConsEnd /STK=4 /UG=Rn.12330 /UG_TITLE=ESTs BF285164 popeye domain containing 2 Popdc2 360718 NM_199113 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded 1376647_at AI235665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235665 /DB_XREF=gi:3829171 /DB_XREF=EST232227 /CLONE=ROVCU76 /FEA=EST /CNT=8 /TID=Rn.25311.1 /TIER=ConsEnd /STK=4 /UG=Rn.25311 /UG_TITLE=ESTs, Weakly similar to CD63 ANTIGEN (R.norvegicus) AI235665 1376648_at BI275570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275570 /DB_XREF=gi:14919610 /DB_XREF=UI-R-CX0-bwy-h-08-0-UI.s1 /CLONE=UI-R-CX0-bwy-h-08-0-UI /FEA=EST /CNT=8 /TID=Rn.81116.1 /TIER=ConsEnd /STK=4 /UG=Rn.81116 /UG_TITLE=ESTs BI275570 v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) Mycn 298894 NM_001013096 0001502 // cartilage condensation // inferred from electronic annotation /// 0001502 // cartilage condensation // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0010942 // positive regulation of cell death // inferred from electronic annotation /// 0010942 // positive regulation of cell death // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1376649_at AI111965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111965 /DB_XREF=gi:3511914 /DB_XREF=UI-R-Y0-mo-c-11-0-UI.s1 /CLONE=UI-R-Y0-mo-c-11-0-UI /FEA=EST /CNT=8 /TID=Rn.19709.1 /TIER=ConsEnd /STK=4 /UG=Rn.19709 /UG_TITLE=ESTs AI111965 SNF1-like kinase 2 Snf1lk2 315649 XR_085897 /// XR_086323 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0046626 // regulation of insulin receptor signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1376650_at BF399323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399323 /DB_XREF=gi:11384327 /DB_XREF=UI-R-CA1-bjb-c-12-0-UI.s1 /CLONE=UI-R-CA1-bjb-c-12-0-UI /FEA=EST /CNT=8 /TID=Rn.41751.1 /TIER=ConsEnd /STK=4 /UG=Rn.41751 /UG_TITLE=ESTs, Weakly similar to YG6P_CAEEL HYPOTHETICAL 60.7 KDA PROTEIN T23G11.8 IN CHROMOSOME I (C.elegans) BF399323 golgi autoantigen, golgin subfamily a, 5 Golga5 299258 NM_001033065 0000301 // retrograde transport, vesicle recycling within Golgi // inferred from mutant phenotype /// 0007030 // Golgi organization // inferred from direct assay /// 0007030 // Golgi organization // not recorded /// 0007030 // Golgi organization // inferred from sequence or structural similarity /// 0007030 // Golgi organization // inferred from electronic annotation /// 0048193 // Golgi vesicle transport // not recorded /// 0048193 // Golgi vesicle transport // inferred from sequence or structural similarity /// 0048193 // Golgi vesicle transport // inferred from electronic annotation 0000137 // Golgi cis cisterna // inferred from direct assay /// 0000138 // Golgi trans cisterna // inferred from direct assay /// 0000139 // Golgi membrane // inferred from direct assay /// 0000139 // Golgi membrane // not recorded /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005797 // Golgi medial cisterna // inferred from direct assay /// 0005801 // cis-Golgi network // inferred from electronic annotation /// 0005801 // cis-Golgi network // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0030663 // COPI coated vesicle membrane // inferred from direct assay /// 0031985 // Golgi cisterna // not recorded /// 0031985 // Golgi cisterna // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from direct assay /// 0017137 // Rab GTPase binding // not recorded /// 0017137 // Rab GTPase binding // inferred from electronic annotation /// 0030674 // protein binding, bridging // inferred from physical interaction /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation 1376651_at AW528774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528774 /DB_XREF=gi:7171188 /DB_XREF=UI-R-BT1-aki-c-10-0-UI.s1 /CLONE=UI-R-BT1-aki-c-10-0-UI /FEA=EST /CNT=8 /TID=Rn.7868.1 /TIER=ConsEnd /STK=4 /UG=Rn.7868 /UG_TITLE=ESTs AW528774 1376652_at BF418957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418957 /DB_XREF=gi:11406946 /DB_XREF=UI-R-BJ2-bqk-h-04-0-UI.s1 /CLONE=UI-R-BJ2-bqk-h-04-0-UI /FEA=EST /CNT=8 /TID=Rn.7159.1 /TIER=ConsEnd /STK=4 /UG=Rn.7159 /UG_TITLE=ESTs, Weakly similar to COMPLEMENT C1Q SUBCOMPONENT, B CHAIN PRECURSOR (R.norvegicus) BF418957 complement component 1, q subcomponent, A chain C1qa 298566 NM_001008515 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0006958 // complement activation, classical pathway // not recorded /// 0045087 // innate immune response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // not recorded 1376653_at BE106772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106772 /DB_XREF=gi:8498874 /DB_XREF=UI-R-BT1-ast-a-04-0-UI.s1 /CLONE=UI-R-BT1-ast-a-04-0-UI /FEA=EST /CNT=8 /TID=Rn.22952.1 /TIER=ConsEnd /STK=4 /UG=Rn.22952 /UG_TITLE=ESTs BE106772 putative homeodomain transcription factor 1 Phtf1 252962 NM_001191102 /// XM_001065811 /// XM_001073852 0007283 // spermatogenesis // non-traceable author statement 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005801 // cis-Golgi network // inferred from direct assay /// 0016021 // integral to membrane // traceable author statement 1376654_at AW521378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521378 /DB_XREF=gi:7163756 /DB_XREF=UI-R-BO0-agl-g-10-0-UI.s1 /CLONE=UI-R-BO0-agl-g-10-0-UI /FEA=EST /CNT=8 /TID=Rn.44994.1 /TIER=ConsEnd /STK=4 /UG=Rn.44994 /UG_TITLE=ESTs AW521378 similar to RIKEN cDNA B130016O10 gene RGD1308448 310358 NM_001107671 0006629 // lipid metabolic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0004629 // phospholipase C activity // inferred from electronic annotation /// 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation 1376655_at AA850435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850435 /DB_XREF=gi:2937975 /DB_XREF=EST193202 /CLONE=ROVAF63 /FEA=EST /CNT=8 /TID=Rn.3935.1 /TIER=ConsEnd /STK=4 /UG=Rn.3935 /UG_TITLE=ESTs AA850435 1376656_at BI274796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274796 /DB_XREF=gi:14886050 /DB_XREF=UI-R-CX0-bxa-b-06-0-UI.s1 /CLONE=UI-R-CX0-bxa-b-06-0-UI /FEA=EST /CNT=8 /TID=Rn.19528.1 /TIER=ConsEnd /STK=4 /UG=Rn.19528 /UG_TITLE=ESTs BI274796 ubiquitin specific peptidase 20 Usp20 311856 NM_001107827 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // not recorded /// 0016579 // protein deubiquitination // not recorded /// 0070536 // protein K63-linked deubiquitination // not recorded /// 0071108 // protein K48-linked deubiquitination // not recorded 0001664 // G-protein-coupled receptor binding // not recorded /// 0004197 // cysteine-type endopeptidase activity // not recorded /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376657_at BE117767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117767 /DB_XREF=gi:8509872 /DB_XREF=UI-R-BS1-azf-g-02-0-UI.s1 /CLONE=UI-R-BS1-azf-g-02-0-UI /FEA=EST /CNT=8 /TID=Rn.19928.1 /TIER=ConsEnd /STK=4 /UG=Rn.19928 /UG_TITLE=ESTs BE117767 cell adhesion molecule 1 Cadm1 363058 NM_001012201 0001889 // liver development // inferred from mutant phenotype /// 0001913 // T cell mediated cytotoxicity // not recorded /// 0007155 // cell adhesion // not recorded /// 0007156 // homophilic cell adhesion // not recorded /// 0007156 // homophilic cell adhesion // inferred from sequence or structural similarity /// 0007157 // heterophilic cell-cell adhesion // not recorded /// 0007157 // heterophilic cell-cell adhesion // inferred from sequence or structural similarity /// 0007416 // synapse assembly // not recorded /// 0008037 // cell recognition // not recorded /// 0008037 // cell recognition // inferred from sequence or structural similarity /// 0016338 // calcium-independent cell-cell adhesion // not recorded /// 0042271 // susceptibility to natural killer cell mediated cytotoxicity // not recorded /// 0042271 // susceptibility to natural killer cell mediated cytotoxicity // inferred from sequence or structural similarity /// 0042271 // susceptibility to natural killer cell mediated cytotoxicity // inferred from electronic annotation /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // not recorded /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // inferred from sequence or structural similarity /// 0050715 // positive regulation of cytokine secretion // inferred from electronic annotation /// 0050715 // positive regulation of cytokine secretion // not recorded /// 0050798 // activated T cell proliferation // not recorded /// 0051606 // detection of stimulus // not recorded /// 0051606 // detection of stimulus // inferred from sequence or structural similarity /// 0051606 // detection of stimulus // inferred from electronic annotation 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // not recorded /// 0005911 // cell-cell junction // inferred from sequence or structural similarity /// 0008021 // synaptic vesicle // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from sequence or structural similarity /// 0019717 // synaptosome // inferred from direct assay /// 0030424 // axon // not recorded /// 0030425 // dendrite // not recorded /// 0045202 // synapse // not recorded 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0008022 // protein C-terminus binding // inferred from sequence or structural similarity /// 0030165 // PDZ domain binding // not recorded /// 0030165 // PDZ domain binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity 1376658_at BF391087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391087 /DB_XREF=gi:11375934 /DB_XREF=UI-R-CA1-bcd-a-06-0-UI.s1 /CLONE=UI-R-CA1-bcd-a-06-0-UI /FEA=EST /CNT=8 /TID=Rn.62699.1 /TIER=ConsEnd /STK=4 /UG=Rn.62699 /UG_TITLE=ESTs BF391087 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 Raph1 363239 NM_001108798 0007165 // signal transduction // inferred from electronic annotation 1376659_at BF282469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282469 /DB_XREF=gi:11213539 /DB_XREF=EST447060 /CLONE=RGIDN74 /FEA=EST /CNT=8 /TID=Rn.13455.1 /TIER=ConsEnd /STK=4 /UG=Rn.13455 /UG_TITLE=ESTs, Weakly similar to NUB1_MOUSE Nucleotide-binding protein 1 (NBP 1) (M.musculus) BF282469 nucleotide binding protein-like Nubpl 299008 NM_001185025 /// XM_001075426 /// XM_216689 0005739 // mitochondrion // not recorded 0005524 // ATP binding // inferred from electronic annotation 1376660_at BG672127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672127 /DB_XREF=gi:13894226 /DB_XREF=DRNCCD01 /CLONE=DRNCCD01 /FEA=EST /CNT=11 /TID=Rn.43341.1 /TIER=ConsEnd /STK=4 /UG=Rn.43341 /UG_TITLE=ESTs BG672127 1376661_at AI556122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556122 /DB_XREF=gi:4488485 /DB_XREF=UI-R-C2p-rf-f-06-0-UI.s1 /CLONE=UI-R-C2p-rf-f-06-0-UI /FEA=EST /CNT=11 /TID=Rn.12043.1 /TIER=ConsEnd /STK=4 /UG=Rn.12043 /UG_TITLE=ESTs AI556122 kazrin LOC313672 313672 NM_001014070 0031424 // keratinization // inferred from electronic annotation 0001533 // cornified envelope // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030057 // desmosome // inferred from electronic annotation 1376662_at BF390141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390141 /DB_XREF=gi:11374984 /DB_XREF=UI-R-CA1-bcj-g-04-0-UI.s1 /CLONE=UI-R-CA1-bcj-g-04-0-UI /FEA=EST /CNT=10 /TID=Rn.1449.1 /TIER=ConsEnd /STK=4 /UG=Rn.1449 /UG_TITLE=ESTs BF390141 1376663_at BI274245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274245 /DB_XREF=gi:14884988 /DB_XREF=UI-R-CW0-bwg-f-10-0-UI.s1 /CLONE=UI-R-CW0-bwg-f-10-0-UI /FEA=EST /CNT=10 /TID=Rn.39162.1 /TIER=ConsEnd /STK=4 /UG=Rn.39162 /UG_TITLE=ESTs BI274245 DDB1 and CUL4 associated factor 15 Dcaf15 304653 NM_001107162 1376664_at BM386170 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386170 /DB_XREF=gi:18186223 /DB_XREF=UI-R-CN1-cjf-k-19-0-UI.s1 /CLONE=UI-R-CN1-cjf-k-19-0-UI /FEA=EST /CNT=10 /TID=Rn.18683.1 /TIER=ConsEnd /STK=4 /UG=Rn.18683 /UG_TITLE=ESTs BM386170 solute carrier family 7, member 6 opposite strand Slc7a6os 246187 NM_139328 1376665_at BG670208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670208 /DB_XREF=gi:13892307 /DB_XREF=DRNABD03 /CLONE=DRNABD03 /FEA=EST /CNT=9 /TID=Rn.29230.1 /TIER=ConsEnd /STK=4 /UG=Rn.29230 /UG_TITLE=ESTs BG670208 1376666_at AI170864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170864 /DB_XREF=gi:3710904 /DB_XREF=EST216805 /CLONE=RMUBC73 /FEA=EST /CNT=9 /TID=Rn.8206.1 /TIER=ConsEnd /STK=4 /UG=Rn.8206 /UG_TITLE=ESTs, Highly similar to JC5762 cytokine-inducible SH2 protein 4 (H.sapiens) AI170864 suppressor of cytokine signaling 6 Socs6 307200 XM_001063512 /// XM_225667 0001678 // cellular glucose homeostasis // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0040008 // regulation of growth // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376667_at BE105541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105541 /DB_XREF=gi:8497643 /DB_XREF=UI-R-BX0-ash-a-06-0-UI.s1 /CLONE=UI-R-BX0-ash-a-06-0-UI /FEA=EST /CNT=9 /TID=Rn.19898.1 /TIER=ConsEnd /STK=4 /UG=Rn.19898 /UG_TITLE=ESTs BE105541 cytochrome P450, family 26, subfamily b, polypeptide 1 Cyp26b1 312495 NM_181087 0001709 // cell fate determination // inferred from electronic annotation /// 0001709 // cell fate determination // not recorded /// 0007140 // male meiosis // inferred from electronic annotation /// 0007140 // male meiosis // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0009954 // proximal/distal pattern formation // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0034653 // retinoic acid catabolic process // inferred from electronic annotation /// 0034653 // retinoic acid catabolic process // not recorded /// 0048384 // retinoic acid receptor signaling pathway // inferred from electronic annotation /// 0048384 // retinoic acid receptor signaling pathway // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded 0001972 // retinoic acid binding // inferred from electronic annotation /// 0001972 // retinoic acid binding // not recorded /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008401 // retinoic acid 4-hydroxylase activity // inferred from electronic annotation /// 0008401 // retinoic acid 4-hydroxylase activity // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376668_at BM388328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388328 /DB_XREF=gi:18188381 /DB_XREF=UI-R-DM1-cjz-l-06-0-UI.s1 /CLONE=UI-R-DM1-cjz-l-06-0-UI /FEA=EST /CNT=9 /TID=Rn.24241.1 /TIER=ConsEnd /STK=4 /UG=Rn.24241 /UG_TITLE=ESTs, Weakly similar to T15736 hypothetical protein C32D5.6 - Caenorhabditis elegans (C.elegans) BM388328 tetratricopeptide repeat domain 39A Ttc39a 298366 NM_001134519 0005488 // binding // inferred from electronic annotation 1376669_at BF283340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283340 /DB_XREF=gi:11214410 /DB_XREF=EST447931 /CLONE=RGIEA65 /FEA=EST /CNT=9 /TID=Rn.20857.1 /TIER=ConsEnd /STK=4 /UG=Rn.20857 /UG_TITLE=ESTs BF283340 1376670_at AW434026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434026 /DB_XREF=gi:6965333 /DB_XREF=UI-R-BJ0p-afo-d-08-0-UI.s1 /CLONE=UI-R-BJ0p-afo-d-08-0-UI /FEA=EST /CNT=9 /TID=Rn.25005.1 /TIER=ConsEnd /STK=4 /UG=Rn.25005 /UG_TITLE=ESTs AW434026 Yip1 domain family, member 2 Yipf2 363027 NM_001014208 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from electronic annotation /// 0030133 // transport vesicle // not recorded 1376671_at BF282357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282357 /DB_XREF=gi:11213339 /DB_XREF=EST446860 /CLONE=RGIDI58 /FEA=EST /CNT=9 /TID=Rn.12178.1 /TIER=ConsEnd /STK=4 /UG=Rn.12178 /UG_TITLE=ESTs, Weakly similar to FRIH RAT FERRITIN HEAVY CHAIN (R.norvegicus) BF282357 rCG36307-like LOC100365336 100365336 XM_002727559 1376672_at AW533083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533083 /DB_XREF=gi:7175497 /DB_XREF=UI-R-BU0-amz-f-08-0-UI.s1 /CLONE=UI-R-BU0-amz-f-08-0-UI /FEA=EST /CNT=9 /TID=Rn.18056.1 /TIER=ConsEnd /STK=4 /UG=Rn.18056 /UG_TITLE=ESTs AW533083 1376673_at BM391853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391853 /DB_XREF=gi:18191906 /DB_XREF=UI-R-DO1-cmk-h-20-0-UI.s1 /CLONE=UI-R-DO1-cmk-h-20-0-UI /FEA=EST /CNT=8 /TID=Rn.16111.1 /TIER=ConsEnd /STK=4 /UG=Rn.16111 /UG_TITLE=ESTs BM391853 1376674_at BI274940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274940 /DB_XREF=gi:14886320 /DB_XREF=UI-R-CW0-bwe-h-02-0-UI.s1 /CLONE=UI-R-CW0-bwe-h-02-0-UI /FEA=EST /CNT=8 /TID=Rn.23979.1 /TIER=ConsEnd /STK=4 /UG=Rn.23979 /UG_TITLE=ESTs BI274940 Mannosidase 2, alpha 2 Man2a2 308757 NM_001107527 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006013 // mannose metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004559 // alpha-mannosidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation 1376675_at BI284779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284779 /DB_XREF=gi:14937763 /DB_XREF=UI-R-CX0s-ccs-b-03-0-UI.s1 /CLONE=UI-R-CX0s-ccs-b-03-0-UI /FEA=EST /CNT=8 /TID=Rn.11988.1 /TIER=ConsEnd /STK=4 /UG=Rn.11988 /UG_TITLE=ESTs BI284779 1376676_a_at BI296154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296154 /DB_XREF=gi:14960310 /DB_XREF=UI-R-DK0-cex-a-02-0-UI.s1 /CLONE=UI-R-DK0-cex-a-02-0-UI /FEA=EST /CNT=8 /TID=Rn.36523.1 /TIER=ConsEnd /STK=4 /UG=Rn.36523 /UG_TITLE=ESTs, Weakly similar to T43458 hypothetical protein DKFZp434F0621.1 (H.sapiens) BI296154 M-phase phosphoprotein 8 Mphosph8 290270 NM_001017375 0006333 // chromatin assembly or disassembly // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003682 // chromatin binding // inferred from electronic annotation 1376677_a_at BF282021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282021 /DB_XREF=gi:11213091 /DB_XREF=EST446612 /CLONE=RGIDA80 /FEA=EST /CNT=2 /TID=Rn.11661.2 /TIER=ConsEnd /STK=0 /UG=Rn.11661 /UG_TITLE=ESTs BF282021 1376678_at BF283712 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283712 /DB_XREF=gi:11214782 /DB_XREF=EST448303 /CLONE=RGIEF78 /FEA=EST /CNT=8 /TID=Rn.25018.1 /TIER=ConsEnd /STK=4 /UG=Rn.25018 /UG_TITLE=ESTs BF283712 amyloid beta (A4) precursor protein-binding, family B, member 2 Apbb2 305338 XM_001077874 /// XM_223399 0001764 // neuron migration // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0007411 // axon guidance // not recorded /// 0030198 // extracellular matrix organization // not recorded /// 0030308 // negative regulation of cell growth // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045749 // negative regulation of S phase of mitotic cell cycle // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded 1376679_at AI556021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556021 /DB_XREF=gi:4488384 /DB_XREF=UI-R-C2p-qz-f-07-0-UI.s1 /CLONE=UI-R-C2p-qz-f-07-0-UI /FEA=EST /CNT=8 /TID=Rn.25082.1 /TIER=ConsEnd /STK=4 /UG=Rn.25082 /UG_TITLE=ESTs AI556021 1376680_at BG379765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379765 /DB_XREF=gi:13304237 /DB_XREF=UI-R-CS0-btj-h-10-0-UI.s1 /CLONE=UI-R-CS0-btj-h-10-0-UI /FEA=EST /CNT=8 /TID=Rn.12915.1 /TIER=ConsEnd /STK=4 /UG=Rn.12915 /UG_TITLE=ESTs BG379765 vacuolar protein sorting 37 homolog C (S. cerevisiae) Vps37c 308178 NM_001107463 1376681_at AI177038 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177038 /DB_XREF=gi:3727676 /DB_XREF=EST220645 /CLONE=ROVCA10 /FEA=EST /CNT=8 /TID=Rn.14828.1 /TIER=ConsEnd /STK=4 /UG=Rn.14828 /UG_TITLE=ESTs AI177038 ribosomal RNA processing 8, methyltransferase, homolog (yeast) Rrp8 308911 NM_001008346 0000183 // chromatin silencing at rDNA // not recorded /// 0000183 // chromatin silencing at rDNA // inferred from sequence or structural similarity /// 0000183 // chromatin silencing at rDNA // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005677 // chromatin silencing complex // not recorded /// 0005677 // chromatin silencing complex // inferred from sequence or structural similarity /// 0005677 // chromatin silencing complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from electronic annotation /// 0033553 // rDNA heterochromatin // not recorded /// 0033553 // rDNA heterochromatin // inferred from sequence or structural similarity /// 0033553 // rDNA heterochromatin // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0035064 // methylated histone residue binding // not recorded /// 0035064 // methylated histone residue binding // inferred from sequence or structural similarity /// 0035064 // methylated histone residue binding // inferred from electronic annotation 1376682_at AI709541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709541 /DB_XREF=gi:4999317 /DB_XREF=UI-R-C3-tn-e-04-0-UI.s1 /CLONE=UI-R-C3-tn-e-04-0-UI /FEA=EST /CNT=8 /TID=Rn.29018.1 /TIER=ConsEnd /STK=4 /UG=Rn.29018 /UG_TITLE=ESTs, Moderately similar to Y188_HUMAN HYPOTHETICAL PROTEIN KIAA0188 (H.sapiens) AI709541 lipin 3 Lpin3 362261 NM_001014184 0016311 // dephosphorylation // not recorded 0008195 // phosphatidate phosphatase activity // inferred from electronic annotation /// 0008195 // phosphatidate phosphatase activity // not recorded 1376683_at AI175063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175063 /DB_XREF=gi:3725701 /DB_XREF=EST218581 /CLONE=RMUCB82 /FEA=EST /CNT=7 /TID=Rn.17857.1 /TIER=ConsEnd /STK=4 /UG=Rn.17857 /UG_TITLE=ESTs AI175063 1376684_at AA874827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA874827 /DB_XREF=gi:4230710 /DB_XREF=UI-R-E0-cg-e-12-0-UI.s1 /CLONE=UI-R-E0-cg-e-12-0-UI /FEA=EST /CNT=7 /TID=Rn.3137.1 /TIER=ConsEnd /STK=4 /UG=Rn.3137 /UG_TITLE=ESTs, Weakly similar to Y008_HUMAN HYPOTHETICAL PROTEIN KIAA0008 (H.sapiens) AA874827 discs, large (Drosophila) homolog-associated protein 5 Dlgap5 289997 NM_001135802 0000087 // M phase of mitotic cell cycle // inferred from electronic annotation /// 0000087 // M phase of mitotic cell cycle // not recorded /// 0007267 // cell-cell signaling // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0031616 // spindle pole centrosome // inferred from electronic annotation /// 0031616 // spindle pole centrosome // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376685_at AW532489 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532489 /DB_XREF=gi:7174903 /DB_XREF=UI-R-BS0-ami-c-10-0-UI.s1 /CLONE=UI-R-BS0-ami-c-10-0-UI /FEA=EST /CNT=7 /TID=Rn.40821.1 /TIER=ConsEnd /STK=4 /UG=Rn.40821 /UG_TITLE=ESTs AW532489 1376686_at BI279363 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279363 /DB_XREF=gi:14927108 /DB_XREF=UI-R-DA0-byn-e-06-0-UI.s1 /CLONE=UI-R-DA0-byn-e-06-0-UI /FEA=EST /CNT=7 /TID=Rn.25241.1 /TIER=ConsEnd /STK=4 /UG=Rn.25241 /UG_TITLE=ESTs BI279363 1376687_at AI010241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010241 /DB_XREF=gi:4133205 /DB_XREF=EST204692 /CLONE=RLUBV71 /FEA=EST /CNT=7 /TID=Rn.12053.1 /TIER=ConsEnd /STK=4 /UG=Rn.12053 /UG_TITLE=ESTs AI010241 ubiquitin specific peptidase 1 Usp1 313387 NM_001015015 0006281 // DNA repair // inferred from electronic annotation /// 0006282 // regulation of DNA repair // not recorded /// 0006282 // regulation of DNA repair // inferred from sequence or structural similarity /// 0006282 // regulation of DNA repair // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0009411 // response to UV // not recorded /// 0009411 // response to UV // inferred from sequence or structural similarity /// 0009411 // response to UV // inferred from electronic annotation /// 0016579 // protein deubiquitination // not recorded /// 0016579 // protein deubiquitination // inferred from sequence or structural similarity /// 0016579 // protein deubiquitination // inferred from electronic annotation /// 0035520 // monoubiquitinated protein deubiquitination // not recorded /// 0035520 // monoubiquitinated protein deubiquitination // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0004221 // ubiquitin thiolesterase activity // not recorded /// 0004221 // ubiquitin thiolesterase activity // inferred from sequence or structural similarity /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0004843 // ubiquitin-specific protease activity // inferred from sequence or structural similarity /// 0004843 // ubiquitin-specific protease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1376688_a_at BF288115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288115 /DB_XREF=gi:11219185 /DB_XREF=EST452706 /CLONE=RGIGP69 /FEA=EST /CNT=7 /TID=Rn.18754.1 /TIER=ConsEnd /STK=4 /UG=Rn.18754 /UG_TITLE=ESTs BF288115 Similar to paired immunoglobin-like type 2 receptor alpha LOC685020 685020 XM_001061953 /// XM_002724832 1376689_at BF282636 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282636 /DB_XREF=gi:11213706 /DB_XREF=EST447227 /CLONE=RGIDR13 /FEA=EST /CNT=7 /TID=Rn.13471.1 /TIER=ConsEnd /STK=4 /UG=Rn.13471 /UG_TITLE=ESTs BF282636 similar to RIKEN cDNA 1700023M03 RGD1305457 314730 NM_001009430 0006917 // induction of apoptosis // inferred from sequence or structural similarity /// 0010165 // response to X-ray // inferred from sequence or structural similarity 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1376690_at BI296277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296277 /DB_XREF=gi:14960561 /DB_XREF=UI-R-DK0-cey-d-10-0-UI.s1 /CLONE=UI-R-DK0-cey-d-10-0-UI /FEA=EST /CNT=7 /TID=Rn.6795.1 /TIER=ConsEnd /STK=4 /UG=Rn.6795 /UG_TITLE=ESTs, Highly similar to 2207342A SRB protein (H.sapiens) BI296277 mediator complex subunit 21 Med21 312849 NM_001107895 0001824 // blastocyst development // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0016592 // mediator complex // not recorded 0003713 // transcription coactivator activity // not recorded /// 0005515 // protein binding // not recorded 1376691_at AI103213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103213 /DB_XREF=gi:3707779 /DB_XREF=EST212502 /CLONE=REMBY53 /FEA=EST /CNT=7 /TID=Rn.8434.1 /TIER=ConsEnd /STK=4 /UG=Rn.8434 /UG_TITLE=ESTs AI103213 1376692_at BM392321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392321 /DB_XREF=gi:18192374 /DB_XREF=UI-R-DO1-ckp-h-06-0-UI.s1 /CLONE=UI-R-DO1-ckp-h-06-0-UI /FEA=EST /CNT=7 /TID=Rn.38272.1 /TIER=ConsEnd /STK=4 /UG=Rn.38272 /UG_TITLE=ESTs, Weakly similar to homeodomain-interacting protein kinase 3 (Rattus norvegicus) (R.norvegicus) BM392321 homeodomain interacting protein kinase 2 Hipk2 362342 NM_001108622 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006978 // DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007224 // smoothened signaling pathway // not recorded /// 0007628 // adult walking behavior // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008344 // adult locomotory behavior // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded /// 0043388 // positive regulation of DNA binding // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046330 // positive regulation of JNK cascade // not recorded /// 0050882 // voluntary musculoskeletal movement // not recorded /// 0060395 // SMAD protein signal transduction // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0016604 // nuclear body // not recorded /// 0016605 // PML body // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0046332 // SMAD binding // not recorded /// 0046790 // virion binding // not recorded 1376693_at AA998964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998964 /DB_XREF=gi:4293088 /DB_XREF=UI-R-C0-ig-d-11-0-UI.s1 /CLONE=UI-R-C0-ig-d-11-0-UI /FEA=EST /CNT=7 /TID=Rn.13231.1 /TIER=ConsEnd /STK=4 /UG=Rn.13231 /UG_TITLE=ESTs AA998964 similar to OEF2 RGD1563091 500011 XM_001069221 /// XM_575365 1376694_at BI296654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296654 /DB_XREF=gi:14961294 /DB_XREF=UI-R-CV2-cgt-g-05-0-UI.s1 /CLONE=UI-R-CV2-cgt-g-05-0-UI /FEA=EST /CNT=7 /TID=Rn.41033.1 /TIER=ConsEnd /STK=4 /UG=Rn.41033 /UG_TITLE=ESTs, Highly similar to T46306 hypothetical protein DKFZp434D2411.1 (H.sapiens) BI296654 limb region 1-like homolog (mouse) Lmbr1l 300215 NM_001013950 1376695_at BE108967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108967 /DB_XREF=gi:8501072 /DB_XREF=UI-R-BS1-aza-e-02-0-UI.s1 /CLONE=UI-R-BS1-aza-e-02-0-UI /FEA=EST /CNT=7 /TID=Rn.43422.1 /TIER=ConsEnd /STK=4 /UG=Rn.43422 /UG_TITLE=ESTs BE108967 partner and localizer of BRCA2 Palb2 293452 NM_001191603 /// XM_001076297 /// XM_215047 0005654 // nucleoplasm // not recorded 1376696_at AI175442 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175442 /DB_XREF=gi:3726080 /DB_XREF=EST218989 /CLONE=RMUCN54 /FEA=EST /CNT=7 /TID=Rn.24077.1 /TIER=ConsEnd /STK=4 /UG=Rn.24077 /UG_TITLE=ESTs AI175442 1376697_at BI275885 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275885 /DB_XREF=gi:14920254 /DB_XREF=UI-R-CX0-bxh-f-11-0-UI.s1 /CLONE=UI-R-CX0-bxh-f-11-0-UI /FEA=EST /CNT=7 /TID=Rn.41382.1 /TIER=ConsEnd /STK=4 /UG=Rn.41382 /UG_TITLE=ESTs BI275885 carbohydrate (chondroitin 4) sulfotransferase 12 Chst12 304322 NM_001037775 0016051 // carbohydrate biosynthetic process // inferred from electronic annotation /// 0030206 // chondroitin sulfate biosynthetic process // not recorded /// 0030208 // dermatan sulfate biosynthetic process // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0047756 // chondroitin 4-sulfotransferase activity // not recorded 1376698_at BF418869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418869 /DB_XREF=gi:11406858 /DB_XREF=UI-R-BJ2-bqj-h-07-0-UI.s1 /CLONE=UI-R-BJ2-bqj-h-07-0-UI /FEA=EST /CNT=7 /TID=Rn.25396.1 /TIER=ConsEnd /STK=4 /UG=Rn.25396 /UG_TITLE=ESTs BF418869 1376699_at AW919694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919694 /DB_XREF=gi:8085493 /DB_XREF=EST350998 /CLONE=RGIGF73 /FEA=EST /CNT=7 /TID=Rn.40357.1 /TIER=ConsEnd /STK=4 /UG=Rn.40357 /UG_TITLE=ESTs AW919694 1376700_at AI179472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179472 /DB_XREF=gi:3730110 /DB_XREF=EST223186 /CLONE=RSPCH80 /FEA=EST /CNT=7 /TID=Rn.43951.1 /TIER=ConsEnd /STK=4 /UG=Rn.43951 /UG_TITLE=ESTs AI179472 LIM domain and actin binding 1 Lima1 300228 NM_001191615 /// XM_001064221 /// XM_217039 0030835 // negative regulation of actin filament depolymerization // not recorded /// 0031529 // ruffle organization // not recorded /// 0051017 // actin filament bundle assembly // not recorded 0001725 // stress fiber // not recorded /// 0005925 // focal adhesion // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded 0003785 // actin monomer binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1376701_a_at BE109436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109436 /DB_XREF=gi:8501581 /DB_XREF=UI-R-BJ1-aut-f-02-0-UI.s1 /CLONE=UI-R-BJ1-aut-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.1747.2 /TIER=ConsEnd /STK=2 /UG=Rn.1747 /UG_TITLE=ESTs BE109436 similar to 5930416I19Rik protein MGC94282 297627 NR_027366 /// NR_027367 1376702_at AI228307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228307 /DB_XREF=gi:3812194 /DB_XREF=EST225002 /CLONE=RBRCT09 /FEA=EST /CNT=7 /TID=Rn.12794.1 /TIER=ConsEnd /STK=4 /UG=Rn.12794 /UG_TITLE=ESTs, Moderately similar to MLC1_HUMAN Membrane protein MLC1 (H.sapiens) AI228307 megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human) Mlc1 315215 NM_001108105 0005768 // endosome // not recorded /// 0016323 // basolateral plasma membrane // not recorded 1376703_at AI501977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501977 /DB_XREF=gi:4399828 /DB_XREF=UI-R-C0-jc-a-02-0-UI.s1 /CLONE=UI-R-C0-jc-a-02-0-UI /FEA=EST /CNT=7 /TID=Rn.8210.1 /TIER=ConsEnd /STK=4 /UG=Rn.8210 /UG_TITLE=ESTs, Weakly similar to SC13_YEAST PROTEIN TRANSPORT PROTEIN SEC13 (S.cerevisiae) AI501977 nucleoporin 37 Nup37 299706 NM_001106775 0000776 // kinetochore // inferred from electronic annotation /// 0000776 // kinetochore // not recorded /// 0005635 // nuclear envelope // not recorded /// 0031080 // Nup107-160 complex // inferred from electronic annotation /// 0031080 // Nup107-160 complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376704_a_at BM390112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390112 /DB_XREF=gi:18190165 /DB_XREF=UI-R-CN1-cjp-d-10-0-UI.s1 /CLONE=UI-R-CN1-cjp-d-10-0-UI /FEA=EST /CNT=7 /TID=Rn.9406.1 /TIER=ConsEnd /STK=4 /UG=Rn.9406 /UG_TITLE=ESTs, Weakly similar to MGD1_RAT Melanoma-associated antigen D1 (MAGE-D1 antigen) (Neurotrophin receptor-interacting MAGE homolog) (Sertoli cell necdin related gene-1) (SNERG-1) (R.norvegicus) BM390112 necdin-like 2 Ndnl2 309259 NM_001173527 /// XM_219708 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376705_a_at BF289020 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289020 /DB_XREF=gi:11220090 /DB_XREF=EST453611 /CLONE=RGIHA30 /FEA=EST /CNT=7 /TID=Rn.6295.1 /TIER=ConsEnd /STK=4 /UG=Rn.6295 /UG_TITLE=ESTs, Highly similar to RB24 MOUSE RAS-RELATED PROTEIN RAB-24 (M.musculus) BF289020 RAB24, member RAS oncogene family Rab24 361208 NM_001015023 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1376706_at BG373822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373822 /DB_XREF=gi:13270359 /DB_XREF=UI-R-CV1-bsk-c-11-0-UI.s1 /CLONE=UI-R-CV1-bsk-c-11-0-UI /FEA=EST /CNT=7 /TID=Rn.16447.1 /TIER=ConsEnd /STK=4 /UG=Rn.16447 /UG_TITLE=ESTs BG373822 transmembrane protein 47 Tmem47 501569 NM_001109317 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1376707_at AW918311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918311 /DB_XREF=gi:8084085 /DB_XREF=EST349615 /CLONE=RGIEQ11 /FEA=EST /CNT=7 /TID=Rn.24378.1 /TIER=ConsEnd /STK=4 /UG=Rn.24378 /UG_TITLE=ESTs, Weakly similar to CERL RAT CEREBELLIN-LIKE GLYCOPROTEIN (R.norvegicus) AW918311 C1q and tumor necrosis factor related protein 4 C1qtnf4 311184 NM_001107745 1376708_at BM385170 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385170 /DB_XREF=gi:18185223 /DB_XREF=UI-R-CN1-cjm-n-08-0-UI.s2 /CLONE=UI-R-CN1-cjm-n-08-0-UI /FEA=EST /CNT=7 /TID=Rn.7936.1 /TIER=ConsEnd /STK=4 /UG=Rn.7936 /UG_TITLE=ESTs BM385170 Family with sequence similarity 115, member C Fam115c 680422 XM_001057103 /// XM_002726354 1376709_at BM388442 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388442 /DB_XREF=gi:18188495 /DB_XREF=UI-R-DZ0-ckm-a-23-0-UI.s1 /CLONE=UI-R-DZ0-ckm-a-23-0-UI /FEA=EST /CNT=7 /TID=Rn.28321.1 /TIER=ConsEnd /STK=4 /UG=Rn.28321 /UG_TITLE=ESTs BM388442 solute carrier family 39 (zinc transporter), member 8 Slc39a8 295455 NM_001011952 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006829 // zinc ion transport // inferred from electronic annotation /// 0030001 // metal ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0046873 // metal ion transmembrane transporter activity // inferred from electronic annotation 1376710_at BE113252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113252 /DB_XREF=gi:8505357 /DB_XREF=UI-R-BJ1-awd-c-08-0-UI.s1 /CLONE=UI-R-BJ1-awd-c-08-0-UI /FEA=EST /CNT=7 /TID=Rn.55053.1 /TIER=ConsEnd /STK=4 /UG=Rn.55053 /UG_TITLE=ESTs BE113252 1376711_at BG673439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG673439 /DB_XREF=gi:13895538 /DB_XREF=DRNBVE04 /CLONE=DRNBVE04 /FEA=EST /CNT=7 /TID=Rn.8282.1 /TIER=ConsEnd /STK=4 /UG=Rn.8282 /UG_TITLE=ESTs BG673439 claudin 11 Cldn11 84588 NM_053457 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0008366 // axon ensheathment // inferred from electronic annotation /// 0008366 // axon ensheathment // not recorded /// 0016338 // calcium-independent cell-cell adhesion // inferred from sequence or structural similarity 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // not recorded /// 0005923 // tight junction // inferred from sequence or structural similarity /// 0005923 // tight junction // traceable author statement /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from sequence or structural similarity 1376712_at AI144967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144967 /DB_XREF=gi:3666766 /DB_XREF=UI-R-BT0-po-a-11-0-UI.s1 /CLONE=UI-R-BT0-po-a-11-0-UI /FEA=EST /CNT=7 /TID=Rn.23818.1 /TIER=ConsEnd /STK=4 /UG=Rn.23818 /UG_TITLE=ESTs AI144967 1376713_at BF420125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420125 /DB_XREF=gi:11408114 /DB_XREF=UI-R-BJ2-bpj-b-12-0-UI.s1 /CLONE=UI-R-BJ2-bpj-b-12-0-UI /FEA=EST /CNT=7 /TID=Rn.41298.1 /TIER=ConsEnd /STK=4 /UG=Rn.41298 /UG_TITLE=ESTs, Highly similar to metastasis associated 1 (Rattus norvegicus) (R.norvegicus) BF420125 metastasis associated 1 Mta1 64520 NM_022588 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0033363 // secretory granule organization // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016581 // NuRD complex // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376714_at AI236072 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236072 /DB_XREF=gi:3829578 /DB_XREF=EST232634 /CLONE=ROVDB07 /FEA=EST /CNT=7 /TID=Rn.17630.1 /TIER=ConsEnd /STK=4 /UG=Rn.17630 /UG_TITLE=ESTs, Weakly similar to T08680 hypothetical protein DKFZp564P0622.1 (H.sapiens) AI236072 antagonist of mitotic exit network 1 homolog (S. cerevisiae) Amn1 302032 NM_001008333 0005515 // protein binding // inferred from electronic annotation 1376715_at AA901065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901065 /DB_XREF=gi:4233563 /DB_XREF=UI-R-A1-dv-g-04-0-UI.s1 /CLONE=UI-R-A1-dv-g-04-0-UI /FEA=EST /CNT=7 /TID=Rn.23036.1 /TIER=ConsEnd /STK=4 /UG=Rn.23036 /UG_TITLE=ESTs, Highly similar to T17225 hypothetical protein DKFZp564C246.1 (H.sapiens) AA901065 calcium binding atopy-related autoantigen 1 /// calcium binding atopy-related autoantigen 1 Cbara1 /// LOC100362065 100362065 /// 365567 NM_199412 /// XM_002730121 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0051561 // elevation of mitochondrial calcium ion concentration // inferred from sequence or structural similarity /// 0070509 // calcium ion import // inferred from sequence or structural similarity 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1376716_at AI044539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044539 /DB_XREF=gi:3291400 /DB_XREF=UI-R-C1-kc-f-11-0-UI.s1 /CLONE=UI-R-C1-kc-f-11-0-UI /FEA=EST /CNT=7 /TID=Rn.17654.1 /TIER=ConsEnd /STK=4 /UG=Rn.17654 /UG_TITLE=ESTs AI044539 1376717_at AI500810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI500810 /DB_XREF=gi:4398661 /DB_XREF=UI-R-C2p-rq-e-02-0-UI.s1 /CLONE=UI-R-C2p-rq-e-02-0-UI /FEA=EST /CNT=7 /TID=Rn.7673.1 /TIER=ConsEnd /STK=4 /UG=Rn.7673 /UG_TITLE=ESTs AI500810 1376718_at AI575121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575121 /DB_XREF=gi:4559497 /DB_XREF=UI-R-G0-ul-f-12-0-UI.s1 /CLONE=UI-R-G0-ul-f-12-0-UI /FEA=EST /CNT=7 /TID=Rn.38936.1 /TIER=ConsEnd /STK=4 /UG=Rn.38936 /UG_TITLE=ESTs AI575121 metallo-beta-lactamase domain containing 1 Mblac1 304346 NM_001024996 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376719_at AI172189 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172189 /DB_XREF=gi:3712229 /DB_XREF=EST218184 /CLONE=RMUBW05 /FEA=EST /CNT=7 /TID=Rn.22285.1 /TIER=ConsEnd /STK=4 /UG=Rn.22285 /UG_TITLE=ESTs AI172189 transmembrane protein 38B Tmem38b 362521 NM_001014191 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0015672 // monovalent inorganic cation transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation 1376720_at BG376414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376414 /DB_XREF=gi:13300886 /DB_XREF=UI-R-CU0-but-c-01-0-UI.s1 /CLONE=UI-R-CU0-but-c-01-0-UI /FEA=EST /CNT=7 /TID=Rn.3735.1 /TIER=ConsEnd /STK=4 /UG=Rn.3735 /UG_TITLE=ESTs, Weakly similar to S62012 probable membrane protein YPL109c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BG376414 aarF domain containing kinase 2 Adck2 312258 NM_001107855 0005739 // mitochondrion // not recorded 0016301 // kinase activity // inferred from electronic annotation 1376721_at BF400666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400666 /DB_XREF=gi:11388641 /DB_XREF=UI-R-CA0-bhe-a-10-0-UI.s1 /CLONE=UI-R-CA0-bhe-a-10-0-UI /FEA=EST /CNT=7 /TID=Rn.49289.1 /TIER=ConsEnd /STK=4 /UG=Rn.49289 /UG_TITLE=ESTs, Moderately similar to TRIO_HUMAN TRIPLE FUNCTIONAL DOMAIN PROTEIN (H.sapiens) BF400666 0006468 // protein phosphorylation // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1376722_at AI409108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409108 /DB_XREF=gi:4252612 /DB_XREF=EST237400 /CLONE=ROVEN36 /FEA=EST /CNT=7 /TID=Rn.23694.1 /TIER=ConsEnd /STK=4 /UG=Rn.23694 /UG_TITLE=ESTs AI409108 nucleoporin 205 Nup205 362335 NM_001108620 0005635 // nuclear envelope // not recorded /// 0046930 // pore complex // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0015288 // porin activity // inferred from electronic annotation 1376723_a_at AW142765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142765 /DB_XREF=gi:6162664 /DB_XREF=EST293018 /CLONE=RGIAV08 /FEA=EST /CNT=7 /TID=Rn.40208.1 /TIER=ConsEnd /STK=4 /UG=Rn.40208 /UG_TITLE=ESTs AW142765 1376724_at AI170671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170671 /DB_XREF=gi:3710711 /DB_XREF=EST216607 /CLONE=RMUAZ73 /FEA=EST /CNT=11 /TID=Rn.15423.1 /TIER=ConsEnd /STK=4 /UG=Rn.15423 /UG_TITLE=ESTs AI170671 1376725_at BM391816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391816 /DB_XREF=gi:18191869 /DB_XREF=UI-R-DO1-cmk-b-08-0-UI.s1 /CLONE=UI-R-DO1-cmk-b-08-0-UI /FEA=EST /CNT=11 /TID=Rn.24624.1 /TIER=ConsEnd /STK=4 /UG=Rn.24624 /UG_TITLE=ESTs BM391816 low density lipoprotein receptor-related protein 6 Lrp6 312781 NM_001107892 0001702 // gastrulation with mouth forming second // not recorded /// 0001756 // somitogenesis // not recorded /// 0001843 // neural tube closure // not recorded /// 0001947 // heart looping // not recorded /// 0003344 // pericardium morphogenesis // not recorded /// 0003401 // axis elongation // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0007268 // synaptic transmission // inferred from mutant phenotype /// 0009950 // dorsal/ventral axis specification // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016337 // cell-cell adhesion // inferred from mutant phenotype /// 0021915 // neural tube development // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030917 // midbrain-hindbrain boundary development // not recorded /// 0035115 // embryonic forelimb morphogenesis // not recorded /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0035121 // tail morphogenesis // not recorded /// 0042074 // cell migration involved in gastrulation // not recorded /// 0042733 // embryonic digit morphogenesis // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from mutant phenotype /// 0048596 // embryonic camera-type eye morphogenesis // not recorded /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0060026 // convergent extension // not recorded /// 0060042 // retina morphogenesis in camera-type eye // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // inferred from mutant phenotype /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0071397 // cellular response to cholesterol // not recorded /// 0090009 // primitive streak formation // not recorded 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // not recorded /// 0005901 // caveola // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0043025 // neuronal cell body // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005041 // low-density lipoprotein receptor activity // not recorded /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded 1376726_at AI101117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101117 /DB_XREF=gi:3706088 /DB_XREF=EST210406 /CLONE=RBRBF74 /FEA=EST /CNT=10 /TID=Rn.12712.1 /TIER=ConsEnd /STK=4 /UG=Rn.12712 /UG_TITLE=ESTs, Moderately similar to BASP RAT BRAIN ACID SOLUBLE PROTEIN 1 (R.norvegicus) AI101117 1376727_at BF283348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283348 /DB_XREF=gi:11214418 /DB_XREF=EST447939 /CLONE=RGIEA75 /FEA=EST /CNT=10 /TID=Rn.25533.1 /TIER=ConsEnd /STK=4 /UG=Rn.25533 /UG_TITLE=ESTs, Weakly similar to Yeast YIP1 protein like (Caenorhabditis elegans) (C.elegans) BF283348 Yip1 domain family, member 4 Yipf4 362699 NM_001009712 0005783 // endoplasmic reticulum // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1376728_at BM392264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392264 /DB_XREF=gi:18192317 /DB_XREF=UI-R-DO1-ckp-l-17-0-UI.s1 /CLONE=UI-R-DO1-ckp-l-17-0-UI /FEA=EST /CNT=9 /TID=Rn.23529.1 /TIER=ConsEnd /STK=4 /UG=Rn.23529 /UG_TITLE=ESTs BM392264 1376729_at AI231781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231781 /DB_XREF=gi:3815661 /DB_XREF=EST228469 /CLONE=RHECO21 /FEA=EST /CNT=8 /TID=Rn.19511.1 /TIER=ConsEnd /STK=4 /UG=Rn.19511 /UG_TITLE=ESTs AI231781 similar to DIP13 alpha RGD1309388 290537 XM_002725153 /// XM_002728373 1376730_at BE103377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103377 /DB_XREF=gi:8495476 /DB_XREF=UI-R-BX0-arb-b-11-0-UI.s1 /CLONE=UI-R-BX0-arb-b-11-0-UI /FEA=EST /CNT=8 /TID=Rn.7627.1 /TIER=ConsEnd /STK=4 /UG=Rn.7627 /UG_TITLE=ESTs BE103377 prefoldin subunit 2 Pfdn2 685607 NM_001109476 0006457 // protein folding // inferred from electronic annotation /// 0006457 // protein folding // not recorded 0016272 // prefoldin complex // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1376731_at AI411331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411331 /DB_XREF=gi:4254835 /DB_XREF=EST239625 /CLONE=RKIEU30 /FEA=EST /CNT=8 /TID=Rn.44077.1 /TIER=ConsEnd /STK=4 /UG=Rn.44077 /UG_TITLE=ESTs AI411331 1376732_at BM388733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388733 /DB_XREF=gi:18188786 /DB_XREF=UI-R-DZ0-ckm-n-12-0-UI.s1 /CLONE=UI-R-DZ0-ckm-n-12-0-UI /FEA=EST /CNT=8 /TID=Rn.34380.1 /TIER=ConsEnd /STK=4 /UG=Rn.34380 /UG_TITLE=ESTs, Weakly similar to CALRETICULIN PRECURSOR (R.norvegicus) BM388733 calreticulin 3 Calr3 364529 NM_001012212 0006457 // protein folding // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1376733_at AI407898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407898 /DB_XREF=gi:4251402 /DB_XREF=EST236188 /CLONE=ROVEE13 /FEA=EST /CNT=8 /TID=Rn.20210.1 /TIER=ConsEnd /STK=4 /UG=Rn.20210 /UG_TITLE=ESTs AI407898 immunoglobulin superfamily, member 11 Igsf11 303926 NM_001013120 0007155 // cell adhesion // inferred from electronic annotation /// 0040008 // regulation of growth // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1376734_at BI279030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279030 /DB_XREF=gi:14926454 /DB_XREF=UI-R-CZ0-byi-c-09-0-UI.s1 /CLONE=UI-R-CZ0-byi-c-09-0-UI /FEA=EST /CNT=8 /TID=Rn.55956.1 /TIER=ConsEnd /STK=4 /UG=Rn.55956 /UG_TITLE=ESTs BI279030 1376735_at BF414136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414136 /DB_XREF=gi:11402125 /DB_XREF=UI-R-BJ2-bom-g-05-0-UI.s1 /CLONE=UI-R-BJ2-bom-g-05-0-UI /FEA=EST /CNT=8 /TID=Rn.55662.1 /TIER=ConsEnd /STK=4 /UG=Rn.55662 /UG_TITLE=ESTs BF414136 1376736_at BG375419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375419 /DB_XREF=gi:13299891 /DB_XREF=UI-R-CV1-btb-b-09-0-UI.s1 /CLONE=UI-R-CV1-btb-b-09-0-UI /FEA=EST /CNT=8 /TID=Rn.37063.1 /TIER=ConsEnd /STK=4 /UG=Rn.37063 /UG_TITLE=ESTs BG375419 1376737_at BE110674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110674 /DB_XREF=gi:8502779 /DB_XREF=UI-R-BJ1-avu-f-11-0-UI.s1 /CLONE=UI-R-BJ1-avu-f-11-0-UI /FEA=EST /CNT=8 /TID=Rn.31990.1 /TIER=ConsEnd /STK=4 /UG=Rn.31990 /UG_TITLE=ESTs BE110674 1376738_at BF284579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284579 /DB_XREF=gi:11215649 /DB_XREF=EST449170 /CLONE=RGIES44 /FEA=EST /CNT=8 /TID=Rn.16924.1 /TIER=ConsEnd /STK=4 /UG=Rn.16924 /UG_TITLE=ESTs BF284579 tetratricopeptide repeat domain 23 Ttc23 308708 NM_001025681 0005488 // binding // inferred from electronic annotation 1376739_at AW252511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252511 /DB_XREF=gi:6596102 /DB_XREF=UI-R-BJ0-ada-d-08-0-UI.s1 /CLONE=UI-R-BJ0-ada-d-08-0-UI /FEA=EST /CNT=8 /TID=Rn.32688.1 /TIER=ConsEnd /STK=4 /UG=Rn.32688 /UG_TITLE=ESTs AW252511 DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 Ddx24 373065 NM_199119 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1376740_at BE120335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120335 /DB_XREF=gi:8512440 /DB_XREF=UI-R-CA0-baq-c-03-0-UI.s1 /CLONE=UI-R-CA0-baq-c-03-0-UI /FEA=EST /CNT=7 /TID=Rn.21087.1 /TIER=ConsEnd /STK=4 /UG=Rn.21087 /UG_TITLE=ESTs BE120335 1376741_at AI413004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI413004 /DB_XREF=gi:4256508 /DB_XREF=EST241305 /CLONE=RBREC54 /FEA=EST /CNT=7 /TID=Rn.25284.1 /TIER=ConsEnd /STK=4 /UG=Rn.25284 /UG_TITLE=ESTs AI413004 hook homolog 3 (Drosophila) Hook3 306548 NM_001136098 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0007032 // endosome organization // inferred from electronic annotation /// 0007032 // endosome organization // not recorded /// 0007040 // lysosome organization // inferred from electronic annotation /// 0007040 // lysosome organization // not recorded /// 0008333 // endosome to lysosome transport // inferred from electronic annotation /// 0008333 // endosome to lysosome transport // not recorded /// 0031122 // cytoplasmic microtubule organization // inferred from electronic annotation /// 0031122 // cytoplasmic microtubule organization // not recorded /// 0045022 // early endosome to late endosome transport // inferred from electronic annotation /// 0045022 // early endosome to late endosome transport // not recorded /// 0051645 // Golgi localization // inferred from electronic annotation /// 0051645 // Golgi localization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005801 // cis-Golgi network // inferred from electronic annotation /// 0005801 // cis-Golgi network // not recorded /// 0030897 // HOPS complex // inferred from electronic annotation /// 0030897 // HOPS complex // not recorded /// 0070695 // FHF complex // inferred from electronic annotation /// 0070695 // FHF complex // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1376742_at BF396436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396436 /DB_XREF=gi:11381408 /DB_XREF=UI-R-BS2-bdy-b-04-0-UI.s1 /CLONE=UI-R-BS2-bdy-b-04-0-UI /FEA=EST /CNT=7 /TID=Rn.23219.1 /TIER=ConsEnd /STK=4 /UG=Rn.23219 /UG_TITLE=ESTs BF396436 1376743_at BE113293 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113293 /DB_XREF=gi:8505438 /DB_XREF=UI-R-BJ1-awe-b-08-0-UI.s1 /CLONE=UI-R-BJ1-awe-b-08-0-UI /FEA=EST /CNT=7 /TID=Rn.38241.1 /TIER=ConsEnd /STK=4 /UG=Rn.38241 /UG_TITLE=ESTs BE113293 1376744_at BI289572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289572 /DB_XREF=gi:14947280 /DB_XREF=UI-R-DK0-cff-f-03-0-UI.s1 /CLONE=UI-R-DK0-cff-f-03-0-UI /FEA=EST /CNT=7 /TID=Rn.14905.1 /TIER=ConsEnd /STK=4 /UG=Rn.14905 /UG_TITLE=ESTs BI289572 1376745_at BM383340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383340 /DB_XREF=gi:18183393 /DB_XREF=UI-R-DM1-cka-a-15-0-UI.s1 /CLONE=UI-R-DM1-cka-a-15-0-UI /FEA=EST /CNT=7 /TID=Rn.64544.1 /TIER=ConsEnd /STK=4 /UG=Rn.64544 /UG_TITLE=ESTs BM383340 RAB interacting factor Rabif 304807 NM_001007678 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376746_at AI145761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145761 /DB_XREF=gi:3667560 /DB_XREF=UI-R-BT0-py-d-07-0-UI.s1 /CLONE=UI-R-BT0-py-d-07-0-UI /FEA=EST /CNT=7 /TID=Rn.19186.1 /TIER=ConsEnd /STK=4 /UG=Rn.19186 /UG_TITLE=ESTs, Weakly similar to T21659 hypothetical protein F32D8.4 - Caenorhabditis elegans (C.elegans) AI145761 lactate dehydrogenase D Ldhd 307858 NM_001008893 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1376747_at BE107075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107075 /DB_XREF=gi:8499180 /DB_XREF=UI-R-BS1-ayp-e-09-0-UI.s1 /CLONE=UI-R-BS1-ayp-e-09-0-UI /FEA=EST /CNT=7 /TID=Rn.19465.1 /TIER=ConsEnd /STK=4 /UG=Rn.19465 /UG_TITLE=ESTs BE107075 1376748_at AI406684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406684 /DB_XREF=gi:4250188 /DB_XREF=EST234971 /CLONE=ROVDV81 /FEA=EST /CNT=7 /TID=Rn.15535.1 /TIER=ConsEnd /STK=4 /UG=Rn.15535 /UG_TITLE=ESTs AI406684 aristaless related homeobox Arx 317268 NM_001100174 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0021759 // globus pallidus development // inferred from electronic annotation /// 0021759 // globus pallidus development // not recorded /// 0021772 // olfactory bulb development // inferred from electronic annotation /// 0021772 // olfactory bulb development // not recorded /// 0021800 // cerebral cortex tangential migration // inferred from electronic annotation /// 0021800 // cerebral cortex tangential migration // not recorded /// 0021831 // embryonic olfactory bulb interneuron precursor migration // inferred from electronic annotation /// 0021831 // embryonic olfactory bulb interneuron precursor migration // not recorded /// 0021846 // cell proliferation in forebrain // inferred from electronic annotation /// 0021846 // cell proliferation in forebrain // not recorded /// 0021853 // cerebral cortex GABAergic interneuron migration // inferred from electronic annotation /// 0021853 // cerebral cortex GABAergic interneuron migration // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0046622 // positive regulation of organ growth // inferred from electronic annotation /// 0046622 // positive regulation of organ growth // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1376749_at AA945955 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945955 /DB_XREF=gi:3105871 /DB_XREF=EST201454 /CLONE=RLUAZ42 /FEA=EST /CNT=7 /TID=Rn.12119.1 /TIER=ConsEnd /STK=4 /UG=Rn.12119 /UG_TITLE=ESTs, Weakly similar to FMOD RAT FIBROMODULIN PRECURSOR (R.norvegicus) AA945955 osteoglycin Ogn 291015 NM_001106103 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376750_at AA963477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963477 /DB_XREF=gi:4278380 /DB_XREF=UI-R-E1-gj-h-06-0-UI.s1 /CLONE=UI-R-E1-gj-h-06-0-UI /FEA=EST /CNT=7 /TID=Rn.13859.1 /TIER=ConsEnd /STK=4 /UG=Rn.13859 /UG_TITLE=ESTs AA963477 1376751_at AI044250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044250 /DB_XREF=gi:3291153 /DB_XREF=UI-R-C1-kb-h-08-0-UI.s2 /CLONE=UI-R-C1-kb-h-08-0-UI /FEA=EST /CNT=7 /TID=Rn.17283.1 /TIER=ConsEnd /STK=4 /UG=Rn.17283 /UG_TITLE=ESTs, Moderately similar to S60715 gene G11 protein (H.sapiens) AI044250 serine/threonine kinase 19 Stk19 361800 NM_001013197 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1376752_at AW918585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918585 /DB_XREF=gi:8084365 /DB_XREF=EST349889 /CLONE=RGIEV08 /FEA=EST /CNT=7 /TID=Rn.25038.1 /TIER=ConsEnd /STK=4 /UG=Rn.25038 /UG_TITLE=ESTs AW918585 1376753_at BE105571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105571 /DB_XREF=gi:8497673 /DB_XREF=UI-R-BX0-ash-d-04-0-UI.s1 /CLONE=UI-R-BX0-ash-d-04-0-UI /FEA=EST /CNT=7 /TID=Rn.7364.1 /TIER=ConsEnd /STK=4 /UG=Rn.7364 /UG_TITLE=ESTs BE105571 fucose-1-phosphate guanylyltransferase Fpgt 310935 NM_199494 1376754_at AI176610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176610 /DB_XREF=gi:3727248 /DB_XREF=EST220199 /CLONE=ROVBU50 /FEA=EST /CNT=7 /TID=Rn.23122.1 /TIER=ConsEnd /STK=4 /UG=Rn.23122 /UG_TITLE=ESTs, Highly similar to SYC_HUMAN CYSTEINYL-TRNA SYNTHETASE (H.sapiens) AI176610 cysteinyl-tRNA synthetase Cars 293638 NM_001106319 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006423 // cysteinyl-tRNA aminoacylation // inferred from electronic annotation /// 0006423 // cysteinyl-tRNA aminoacylation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0000049 // tRNA binding // not recorded /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004817 // cysteine-tRNA ligase activity // inferred from electronic annotation /// 0004817 // cysteine-tRNA ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1376755_at BF419646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419646 /DB_XREF=gi:11407640 /DB_XREF=UI-R-CA0-bpe-f-06-0-UI.s1 /CLONE=UI-R-CA0-bpe-f-06-0-UI /FEA=EST /CNT=7 /TID=Rn.38896.1 /TIER=ConsEnd /STK=4 /UG=Rn.38896 /UG_TITLE=ESTs BF419646 Retinoic acid receptor, beta Rarb 24706 XM_001059459 /// XM_001059523 /// XM_223843 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001657 // ureteric bud development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0021756 // striatum development // not recorded /// 0022008 // neurogenesis // not recorded /// 0032331 // negative regulation of chondrocyte differentiation // not recorded /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043068 // positive regulation of programmed cell death // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048048 // embryonic eye morphogenesis // not recorded /// 0055012 // ventricular cardiac muscle cell differentiation // not recorded /// 0061037 // negative regulation of cartilage development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0003708 // retinoic acid receptor activity // inferred from electronic annotation /// 0003708 // retinoic acid receptor activity // non-traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1376756_at BI289630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289630 /DB_XREF=gi:14947397 /DB_XREF=UI-R-DK0-cfi-c-04-0-UI.s1 /CLONE=UI-R-DK0-cfi-c-04-0-UI /FEA=EST /CNT=7 /TID=Rn.34091.1 /TIER=ConsEnd /STK=4 /UG=Rn.34091 /UG_TITLE=ESTs BI289630 1376757_at AW532942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532942 /DB_XREF=gi:7175356 /DB_XREF=UI-R-BU0-amy-a-01-0-UI.s1 /CLONE=UI-R-BU0-amy-a-01-0-UI /FEA=EST /CNT=7 /TID=Rn.47796.1 /TIER=ConsEnd /STK=4 /UG=Rn.47796 /UG_TITLE=ESTs, Weakly similar to HNF3FH TRANSCRIPTION FACTOR GENESIS (R.norvegicus) AW532942 similar to Forkhead box protein F1 (Forkhead-related protein FKHL5) (Forkhead-related transcription factor 1) (FREAC-1) (Hepatocyte nuclear factor 3 forkhead homolog 8) (HFH-8) LOC687536 687536 XM_001079002 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1376758_at AW532065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532065 /DB_XREF=gi:7174479 /DB_XREF=UI-R-BS0-amn-g-04-0-UI.s1 /CLONE=UI-R-BS0-amn-g-04-0-UI /FEA=EST /CNT=7 /TID=Rn.26799.1 /TIER=ConsEnd /STK=4 /UG=Rn.26799 /UG_TITLE=ESTs, Highly similar to candidate tumor suppressor p33ING1 (H.sapiens) AW532065 inhibitor of growth family, member 1 Ing1 306626 NM_001038591 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376759_at BF406241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406241 /DB_XREF=gi:11394216 /DB_XREF=UI-R-CA1-bjf-k-02-0-UI.s1 /CLONE=UI-R-CA1-bjf-k-02-0-UI /FEA=EST /CNT=7 /TID=Rn.55529.1 /TIER=ConsEnd /STK=4 /UG=Rn.55529 /UG_TITLE=ESTs BF406241 1376760_at BF402128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402128 /DB_XREF=gi:11390067 /DB_XREF=UI-R-CA1-bim-h-01-0-UI.s1 /CLONE=UI-R-CA1-bim-h-01-0-UI /FEA=EST /CNT=7 /TID=Rn.18063.1 /TIER=ConsEnd /STK=4 /UG=Rn.18063 /UG_TITLE=ESTs, Weakly similar to A33633 transcription repressor protein GCF (H.sapiens) BF402128 similar to GC-rich sequence DNA-binding factor homolog LOC681004 681004 XM_001057305 /// XM_002724693 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1376761_at BF419085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419085 /DB_XREF=gi:11407074 /DB_XREF=UI-R-BJ2-bqn-d-05-0-UI.s1 /CLONE=UI-R-BJ2-bqn-d-05-0-UI /FEA=EST /CNT=6 /TID=Rn.23483.1 /TIER=ConsEnd /STK=4 /UG=Rn.23483 /UG_TITLE=ESTs BF419085 histone deacetylase 4 Hdac4 363287 XM_001067733 /// XM_343629 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0002076 // osteoblast development // inferred from electronic annotation /// 0002076 // osteoblast development // not recorded /// 0006338 // chromatin remodeling // inferred from electronic annotation /// 0006338 // chromatin remodeling // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010832 // negative regulation of myotube differentiation // inferred from electronic annotation /// 0010832 // negative regulation of myotube differentiation // not recorded /// 0010882 // regulation of cardiac muscle contraction by calcium ion signaling // inferred from electronic annotation /// 0010882 // regulation of cardiac muscle contraction by calcium ion signaling // not recorded /// 0014894 // response to denervation involved in regulation of muscle adaptation // inferred from electronic annotation /// 0014894 // response to denervation involved in regulation of muscle adaptation // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016575 // histone deacetylation // not recorded /// 0016575 // histone deacetylation // inferred from electronic annotation /// 0033235 // positive regulation of protein sumoylation // inferred from electronic annotation /// 0033235 // positive regulation of protein sumoylation // not recorded /// 0034983 // peptidyl-lysine deacetylation // inferred from electronic annotation /// 0034983 // peptidyl-lysine deacetylation // not recorded /// 0042493 // response to drug // inferred from direct assay /// 0043393 // regulation of protein binding // inferred from electronic annotation /// 0043393 // regulation of protein binding // not recorded /// 0043433 // negative regulation of transcription factor activity // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045668 // negative regulation of osteoblast differentiation // inferred from electronic annotation /// 0045668 // negative regulation of osteoblast differentiation // not recorded /// 0045820 // negative regulation of glycolysis // inferred from electronic annotation /// 0045820 // negative regulation of glycolysis // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0048742 // regulation of skeletal muscle fiber development // inferred from electronic annotation /// 0048742 // regulation of skeletal muscle fiber development // not recorded /// 0051091 // positive regulation of transcription factor activity // inferred from electronic annotation /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0051153 // regulation of striated muscle cell differentiation // not recorded /// 0051153 // regulation of striated muscle cell differentiation // inferred from electronic annotation /// 0070555 // response to interleukin-1 // inferred from electronic annotation /// 0070555 // response to interleukin-1 // not recorded /// 0070932 // histone H3 deacetylation // inferred from electronic annotation /// 0070932 // histone H3 deacetylation // not recorded /// 0070933 // histone H4 deacetylation // inferred from electronic annotation /// 0070933 // histone H4 deacetylation // not recorded 0000118 // histone deacetylase complex // inferred from electronic annotation /// 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0017053 // transcriptional repressor complex // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // not recorded /// 0030017 // sarcomere // inferred from direct assay /// 0030018 // Z disc // inferred from direct assay /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0031594 // neuromuscular junction // not recorded /// 0031672 // A band // inferred from direct assay /// 0042641 // actomyosin // inferred from electronic annotation /// 0042641 // actomyosin // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0004407 // histone deacetylase activity // inferred from electronic annotation /// 0004407 // histone deacetylase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030955 // potassium ion binding // inferred from electronic annotation /// 0030955 // potassium ion binding // not recorded /// 0033558 // protein deacetylase activity // not recorded /// 0033558 // protein deacetylase activity // inferred from electronic annotation /// 0033613 // transcription activator binding // inferred from electronic annotation /// 0033613 // transcription activator binding // not recorded /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0070491 // transcription repressor binding // inferred from electronic annotation /// 0070491 // transcription repressor binding // not recorded 1376762_at BE112933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112933 /DB_XREF=gi:8505038 /DB_XREF=UI-R-BJ1-awa-e-07-0-UI.s1 /CLONE=UI-R-BJ1-awa-e-07-0-UI /FEA=EST /CNT=6 /TID=Rn.17662.1 /TIER=ConsEnd /STK=4 /UG=Rn.17662 /UG_TITLE=ESTs BE112933 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 Plekha1 361659 NM_001079894 0001553 // luteinization // not recorded /// 0007283 // spermatogenesis // not recorded /// 0008209 // androgen metabolic process // not recorded /// 0008210 // estrogen metabolic process // not recorded /// 0008585 // female gonad development // not recorded /// 0009791 // post-embryonic development // not recorded /// 0014065 // phosphoinositide 3-kinase cascade // not recorded /// 0031529 // ruffle organization // not recorded /// 0033327 // Leydig cell differentiation // not recorded /// 0035264 // multicellular organism growth // not recorded /// 0045184 // establishment of protein localization // not recorded /// 0048008 // platelet-derived growth factor receptor signaling pathway // not recorded /// 0048705 // skeletal system morphogenesis // not recorded /// 0050853 // B cell receptor signaling pathway // not recorded /// 0051898 // negative regulation of protein kinase B signaling cascade // not recorded /// 0060021 // palate development // not recorded /// 0060325 // face morphogenesis // not recorded /// 0070301 // cellular response to hydrogen peroxide // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0032587 // ruffle membrane // not recorded 0005515 // protein binding // not recorded /// 0030165 // PDZ domain binding // not recorded /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // not recorded 1376763_at AW915423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915423 /DB_XREF=gi:8081119 /DB_XREF=EST346727 /CLONE=RGICV26 /FEA=EST /CNT=6 /TID=Rn.6906.1 /TIER=ConsEnd /STK=4 /UG=Rn.6906 /UG_TITLE=ESTs AW915423 1376764_at AI406412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406412 /DB_XREF=gi:4249916 /DB_XREF=EST234698 /CLONE=RBRDT74 /FEA=EST /CNT=6 /TID=Rn.37724.1 /TIER=ConsEnd /STK=4 /UG=Rn.37724 /UG_TITLE=ESTs AI406412 1376765_at BF283408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283408 /DB_XREF=gi:11214478 /DB_XREF=EST447999 /CLONE=RGIEB59 /FEA=EST /CNT=6 /TID=Rn.16360.1 /TIER=ConsEnd /STK=4 /UG=Rn.16360 /UG_TITLE=ESTs BF283408 maestro Mro 361348 XM_001053368 /// XM_341629 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 1376766_at BF416786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416786 /DB_XREF=gi:11404775 /DB_XREF=UI-R-CN0-bkz-h-11-0-UI.s1 /CLONE=UI-R-CN0-bkz-h-11-0-UI /FEA=EST /CNT=6 /TID=Rn.16524.1 /TIER=ConsEnd /STK=4 /UG=Rn.16524 /UG_TITLE=ESTs, Moderately similar to T13963 formin related protein, lymphocyte specific - mouse (M.musculus) BF416786 formin-like 1 Fmnl1 287746 NM_001105846 0006929 // substrate-dependent cell migration // not recorded /// 0009987 // cellular process // not recorded /// 0016043 // cellular component organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005522 // profilin binding // not recorded /// 0017048 // Rho GTPase binding // inferred from electronic annotation 1376767_at BF542425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542425 /DB_XREF=gi:11633538 /DB_XREF=UI-R-C3-sh-f-06-0-UI.r1 /CLONE=UI-R-C3-sh-f-06-0-UI /FEA=EST /CNT=6 /TID=Rn.34723.1 /TIER=ConsEnd /STK=4 /UG=Rn.34723 /UG_TITLE=ESTs BF542425 G protein-coupled receptor 116 Gpr116 245977 NM_139110 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1376768_at BM386807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386807 /DB_XREF=gi:18186860 /DB_XREF=UI-R-CN1-cjh-g-04-0-UI.s1 /CLONE=UI-R-CN1-cjh-g-04-0-UI /FEA=EST /CNT=6 /TID=Rn.8702.1 /TIER=ConsEnd /STK=4 /UG=Rn.8702 /UG_TITLE=ESTs BM386807 1376769_at BM388080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388080 /DB_XREF=gi:18188133 /DB_XREF=UI-R-DM1-cjz-d-05-0-UI.s1 /CLONE=UI-R-DM1-cjz-d-05-0-UI /FEA=EST /CNT=6 /TID=Rn.52847.1 /TIER=ConsEnd /STK=4 /UG=Rn.52847 /UG_TITLE=ESTs BM388080 Rad54 like 2 (S. cerevisiae) Rad54l2 363135 NM_001134520 0045449 // regulation of transcription // not recorded 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003712 // transcription cofactor activity // not recorded /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded 1376770_at BM389214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389214 /DB_XREF=gi:18189267 /DB_XREF=UI-R-DZ0-cko-g-10-0-UI.s1 /CLONE=UI-R-DZ0-cko-g-10-0-UI /FEA=EST /CNT=6 /TID=Rn.12811.1 /TIER=ConsEnd /STK=4 /UG=Rn.12811 /UG_TITLE=ESTs, Weakly similar to Y48B6A.6.p (Caenorhabditis elegans) (C.elegans) BM389214 EF-hand domain family, member D1 Efhd1 501181 NM_001109310 0031175 // neuron projection development // not recorded 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376771_at BF412303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412303 /DB_XREF=gi:11400292 /DB_XREF=UI-R-BT1-bnc-a-04-0-UI.s1 /CLONE=UI-R-BT1-bnc-a-04-0-UI /FEA=EST /CNT=6 /TID=Rn.39269.1 /TIER=ConsEnd /STK=4 /UG=Rn.39269 /UG_TITLE=ESTs BF412303 protein phosphatase 1 (formerly 2C)-like Ppm1l 310506 NM_001107681 0000165 // MAPKKK cascade // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // not recorded /// 0016311 // dephosphorylation // not recorded 0005789 // endoplasmic reticulum membrane // not recorded /// 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376772_at BM386583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386583 /DB_XREF=gi:18186636 /DB_XREF=UI-R-CN1-cjg-m-02-0-UI.s1 /CLONE=UI-R-CN1-cjg-m-02-0-UI /FEA=EST /CNT=6 /TID=Rn.49667.1 /TIER=ConsEnd /STK=4 /UG=Rn.49667 /UG_TITLE=ESTs BM386583 Similar to chromosome 6 open reading frame 130; hypothetical 9.7 kDa protein dJ34B21.3 RGD1308299 367214 NM_001134596 1376773_at AI406968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406968 /DB_XREF=gi:4250472 /DB_XREF=EST235256 /CLONE=ROVDW86 /FEA=EST /CNT=6 /TID=Rn.19462.1 /TIER=ConsEnd /STK=4 /UG=Rn.19462 /UG_TITLE=ESTs AI406968 1376774_at BG380482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380482 /DB_XREF=gi:13304954 /DB_XREF=UI-R-CT0-btx-g-07-0-UI.s1 /CLONE=UI-R-CT0-btx-g-07-0-UI /FEA=EST /CNT=6 /TID=Rn.43651.1 /TIER=ConsEnd /STK=4 /UG=Rn.43651 /UG_TITLE=ESTs BG380482 Exocyst complex component 4 Exoc4 116654 NM_053875 0006612 // protein targeting to membrane // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0006903 // vesicle targeting // traceable author statement /// 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0030010 // establishment of cell polarity // inferred from mutant phenotype /// 0044091 // membrane biogenesis // inferred from mutant phenotype /// 0048709 // oligodendrocyte differentiation // inferred from mutant phenotype /// 0050850 // positive regulation of calcium-mediated signaling // inferred from mutant phenotype /// 0051223 // regulation of protein transport // inferred from mutant phenotype /// 0055108 // Golgi to transport vesicle transport // inferred from direct assay 0000145 // exocyst // inferred from electronic annotation /// 0000145 // exocyst // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0043209 // myelin sheath // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from direct assay /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0030165 // PDZ domain binding // not recorded /// 0030165 // PDZ domain binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1376775_at AI059078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059078 /DB_XREF=gi:3332855 /DB_XREF=UI-R-C1-ks-h-10-0-UI.s1 /CLONE=UI-R-C1-ks-h-10-0-UI /FEA=EST /CNT=6 /TID=Rn.19060.1 /TIER=ConsEnd /STK=4 /UG=Rn.19060 /UG_TITLE=ESTs AI059078 proline rich 5 like Prr5l 362171 NM_001080150 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1376776_at AW915484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915484 /DB_XREF=gi:8081181 /DB_XREF=EST346788 /CLONE=RGICV88 /FEA=EST /CNT=6 /TID=Rn.6789.1 /TIER=ConsEnd /STK=4 /UG=Rn.6789 /UG_TITLE=ESTs AW915484 coiled-coil domain containing 17 Ccdc17 500528 NM_001014067 1376777_at AI575415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575415 /DB_XREF=gi:4559791 /DB_XREF=UI-R-Y0-vg-a-12-0-UI.s1 /CLONE=UI-R-Y0-vg-a-12-0-UI /FEA=EST /CNT=6 /TID=Rn.41214.1 /TIER=ConsEnd /STK=4 /UG=Rn.41214 /UG_TITLE=ESTs AI575415 retinol binding protein 3, interstitial Rbp3 24711 NM_001191832 /// XM_001060185 /// XM_341400 0006508 // proteolysis // inferred from electronic annotation /// 0042462 // eye photoreceptor cell development // non-traceable author statement 0004872 // receptor activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation 1376778_at AI406670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406670 /DB_XREF=gi:4250174 /DB_XREF=EST234957 /CLONE=ROVDV73 /FEA=EST /CNT=6 /TID=Rn.60926.1 /TIER=ConsEnd /STK=4 /UG=Rn.60926 /UG_TITLE=ESTs AI406670 1376779_at BI295511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295511 /DB_XREF=gi:14959022 /DB_XREF=UI-R-DK0-cev-c-01-0-UI.s1 /CLONE=UI-R-DK0-cev-c-01-0-UI /FEA=EST /CNT=6 /TID=Rn.63821.1 /TIER=ConsEnd /STK=4 /UG=Rn.63821 /UG_TITLE=ESTs, Highly similar to FXO1 MOUSE FORKHEAD PROTEIN O1A (M.musculus) BI295511 forkhead box O1 Foxo1 84482 NM_001191846 /// XM_001056726 /// XM_342244 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // not recorded /// 0032873 // negative regulation of stress-activated MAPK cascade // inferred from electronic annotation /// 0032873 // negative regulation of stress-activated MAPK cascade // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045722 // positive regulation of gluconeogenesis // not recorded /// 0045941 // positive regulation of transcription // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // inferred by curator /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1376780_at AI172311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172311 /DB_XREF=gi:3712351 /DB_XREF=EST218312 /CLONE=RMUBX66 /FEA=EST /CNT=6 /TID=Rn.40252.1 /TIER=ConsEnd /STK=4 /UG=Rn.40252 /UG_TITLE=ESTs AI172311 family with sequence similarity 103, member A1 Fam103a1 293058 NM_001127451 1376781_at BI286116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286116 /DB_XREF=gi:14940442 /DB_XREF=UI-R-DD0-bzt-g-07-0-UI.s1 /CLONE=UI-R-DD0-bzt-g-07-0-UI /FEA=EST /CNT=6 /TID=Rn.27980.1 /TIER=ConsEnd /STK=4 /UG=Rn.27980 /UG_TITLE=ESTs BI286116 1376782_at AW915083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915083 /DB_XREF=gi:8080782 /DB_XREF=EST346400 /CLONE=RGICJ41 /FEA=EST /CNT=6 /TID=Rn.19746.1 /TIER=ConsEnd /STK=4 /UG=Rn.19746 /UG_TITLE=ESTs AW915083 CDC14 cell division cycle 14 homolog A (S. cerevisiae) Cdc14a 310806 NM_001107718 /// NM_001134856 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1376783_at AW530665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530665 /DB_XREF=gi:7173079 /DB_XREF=UI-R-C4-ala-h-10-0-UI.s1 /CLONE=UI-R-C4-ala-h-10-0-UI /FEA=EST /CNT=6 /TID=Rn.7485.1 /TIER=ConsEnd /STK=4 /UG=Rn.7485 /UG_TITLE=ESTs AW530665 1376784_at BI274481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274481 /DB_XREF=gi:14885433 /DB_XREF=UI-R-CW0-bwj-d-04-0-UI.s1 /CLONE=UI-R-CW0-bwj-d-04-0-UI /FEA=EST /CNT=6 /TID=Rn.17852.1 /TIER=ConsEnd /STK=4 /UG=Rn.17852 /UG_TITLE=ESTs BI274481 Formin binding protein 1 Fnbp1 192348 NM_138914 0006897 // endocytosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from direct assay /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1376785_at AI104799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104799 /DB_XREF=gi:3709073 /DB_XREF=EST214088 /CLONE=RHECJ43 /FEA=EST /CNT=6 /TID=Rn.10412.1 /TIER=ConsEnd /STK=4 /UG=Rn.10412 /UG_TITLE=ESTs, Highly similar to SCP3 RAT SYNAPTONEMAL COMPLEX PROTEIN 3 (R.norvegicus) AI104799 1376786_a_at BF397709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397709 /DB_XREF=gi:11382693 /DB_XREF=UI-R-BS2-bed-g-01-0-UI.s1 /CLONE=UI-R-BS2-bed-g-01-0-UI /FEA=EST /CNT=6 /TID=Rn.32007.1 /TIER=ConsEnd /STK=4 /UG=Rn.32007 /UG_TITLE=ESTs BF397709 neogenin homolog 1 (chicken) Neo1 81735 NM_001191881 /// XM_001074913 /// XM_343402 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007520 // myoblast fusion // not recorded /// 0045449 // regulation of transcription // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // not recorded /// 0045296 // cadherin binding // not recorded 1376787_at BE097267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097267 /DB_XREF=gi:8488198 /DB_XREF=UI-R-BO1-apv-c-08-0-UI.s1 /CLONE=UI-R-BO1-apv-c-08-0-UI /FEA=EST /CNT=6 /TID=Rn.16996.1 /TIER=ConsEnd /STK=4 /UG=Rn.16996 /UG_TITLE=ESTs BE097267 similar to hypothetical protein FLJ31810 RGD1310773 313156 NM_001107926 0005515 // protein binding // inferred from electronic annotation 1376788_at AA818353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818353 /DB_XREF=gi:4198180 /DB_XREF=UI-R-A0-ad-g-01-0-UI.s1 /CLONE=UI-R-A0-ad-g-01-0-UI /FEA=EST /CNT=6 /TID=Rn.1031.1 /TIER=ConsEnd /STK=4 /UG=Rn.1031 /UG_TITLE=ESTs AA818353 death associated protein kinase 1 Dapk1 306722 NM_001107335 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded 1376789_at AI410679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410679 /DB_XREF=gi:4254183 /DB_XREF=EST238972 /CLONE=RHECV19 /FEA=EST /CNT=6 /TID=Rn.43838.1 /TIER=ConsEnd /STK=4 /UG=Rn.43838 /UG_TITLE=ESTs AI410679 1376790_at AI010439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010439 /DB_XREF=gi:4133254 /DB_XREF=EST204890 /CLONE=RLUBZ49 /FEA=EST /CNT=6 /TID=Rn.30608.1 /TIER=ConsEnd /STK=4 /UG=Rn.30608 /UG_TITLE=ESTs AI010439 1376791_at BF291192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291192 /DB_XREF=gi:11222262 /DB_XREF=EST455783 /CLONE=RGIIJ93 /FEA=EST /CNT=6 /TID=Rn.44066.1 /TIER=ConsEnd /STK=4 /UG=Rn.44066 /UG_TITLE=ESTs BF291192 ankyrin repeat domain 43 Ankrd43 497903 XM_001073996 /// XM_573089 1376792_at AW251313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251313 /DB_XREF=gi:6594904 /DB_XREF=UI-R-BJ0-adg-f-12-0-UI.s1 /CLONE=UI-R-BJ0-adg-f-12-0-UI /FEA=EST /CNT=6 /TID=Rn.828.1 /TIER=ConsEnd /STK=4 /UG=Rn.828 /UG_TITLE=ESTs AW251313 family with sequence similarity 176, member A Fam176a 500221 NM_001109243 1376793_at BF397794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397794 /DB_XREF=gi:11382778 /DB_XREF=UI-R-BS2-bee-g-02-0-UI.s1 /CLONE=UI-R-BS2-bee-g-02-0-UI /FEA=EST /CNT=6 /TID=Rn.28902.1 /TIER=ConsEnd /STK=4 /UG=Rn.28902 /UG_TITLE=ESTs BF397794 hippocampus abundant transcript-like 1 Hiatl1 306687 NM_001107334 0006810 // transport // inferred from electronic annotation /// 0015904 // tetracycline transport // inferred from electronic annotation /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015520 // tetracycline:hydrogen antiporter activity // inferred from electronic annotation 1376794_at BF548418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548418 /DB_XREF=gi:11639525 /DB_XREF=UI-R-C0-hy-d-10-0-UI.r1 /CLONE=UI-R-C0-hy-d-10-0-UI /FEA=EST /CNT=6 /TID=Rn.11637.1 /TIER=ConsEnd /STK=4 /UG=Rn.11637 /UG_TITLE=ESTs BF548418 1376795_at AW916092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916092 /DB_XREF=gi:8081809 /DB_XREF=EST347396 /CLONE=RGIDF87 /FEA=EST /CNT=6 /TID=Rn.15411.1 /TIER=ConsEnd /STK=4 /UG=Rn.15411 /UG_TITLE=ESTs AW916092 phosphoinositide-3-kinase adaptor protein 1 Pik3ap1 294048 NM_001106368 0007165 // signal transduction // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0005066 // transmembrane receptor protein tyrosine kinase signaling protein activity // inferred from electronic annotation /// 0005066 // transmembrane receptor protein tyrosine kinase signaling protein activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376796_at BG372452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372452 /DB_XREF=gi:13268989 /DB_XREF=UI-R-CV1-bsc-h-12-0-UI.s1 /CLONE=UI-R-CV1-bsc-h-12-0-UI /FEA=EST /CNT=6 /TID=Rn.5837.1 /TIER=ConsEnd /STK=4 /UG=Rn.5837 /UG_TITLE=ESTs BG372452 1376797_at AA997458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997458 /DB_XREF=gi:4283730 /DB_XREF=UI-R-C0-hl-e-12-0-UI.s1 /CLONE=UI-R-C0-hl-e-12-0-UI /FEA=EST /CNT=6 /TID=Rn.12709.1 /TIER=ConsEnd /STK=4 /UG=Rn.12709 /UG_TITLE=ESTs AA997458 CSRP2 binding protein Csrp2bp 362224 NM_001191855 /// XM_001054440 /// XM_342530 0008152 // metabolic process // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0016573 // histone acetylation // not recorded /// 0022402 // cell cycle process // not recorded 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation 1376798_at AW527232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527232 /DB_XREF=gi:7169646 /DB_XREF=UI-R-BO1-ajs-a-04-0-UI.s1 /CLONE=UI-R-BO1-ajs-a-04-0-UI /FEA=EST /CNT=6 /TID=Rn.46462.1 /TIER=ConsEnd /STK=4 /UG=Rn.46462 /UG_TITLE=ESTs AW527232 1376799_a_at AA925924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925924 /DB_XREF=gi:4237115 /DB_XREF=UI-R-A1-es-g-11-0-UI.s1 /CLONE=UI-R-A1-es-g-11-0-UI /FEA=EST /CNT=1 /TID=Rn.15618.2 /TIER=ConsEnd /STK=1 /UG=Rn.15618 /UG_TITLE=ESTs AA925924 cytokine receptor-like factor 1 Crlf1 290655 NM_001106074 0001657 // ureteric bud development // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0019955 // cytokine binding // not recorded 1376800_at AA892496 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892496 /DB_XREF=gi:3019375 /DB_XREF=EST196299 /CLONE=RKIAS17 /FEA=EST /CNT=6 /TID=Rn.3571.1 /TIER=ConsEnd /STK=4 /UG=Rn.3571 /UG_TITLE=ESTs AA892496 1376801_at AW915035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915035 /DB_XREF=gi:8080720 /DB_XREF=EST346339 /CLONE=RGIBN71 /FEA=EST /CNT=6 /TID=Rn.12781.1 /TIER=ConsEnd /STK=4 /UG=Rn.12781 /UG_TITLE=ESTs AW915035 RGD1564450 RGD1564450 294291 NM_001106377 1376802_at AW915558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915558 /DB_XREF=gi:8081256 /DB_XREF=EST346862 /CLONE=RGICW74 /FEA=EST /CNT=6 /TID=Rn.21551.1 /TIER=ConsEnd /STK=4 /UG=Rn.21551 /UG_TITLE=ESTs AW915558 trichoplein, keratin filament binding Tchp 304547 NM_001191666 /// XM_002724825 /// XM_002727974 /// XM_222232 0045095 // keratin filament // not recorded /// 0045179 // apical cortex // not recorded 0005515 // protein binding // not recorded 1376803_at AW144044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144044 /DB_XREF=gi:6163943 /DB_XREF=EST294340 /CLONE=RGICF93 /FEA=EST /CNT=6 /TID=Rn.53900.1 /TIER=ConsEnd /STK=4 /UG=Rn.53900 /UG_TITLE=ESTs AW144044 regulator of G-protein signaling 3 Rgs3 54293 NM_019340 0007165 // signal transduction // inferred from direct assay /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1376804_at BM386777 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386777 /DB_XREF=gi:18186830 /DB_XREF=UI-R-CN1-cjg-p-18-0-UI.s1 /CLONE=UI-R-CN1-cjg-p-18-0-UI /FEA=EST /CNT=6 /TID=Rn.18047.1 /TIER=ConsEnd /STK=4 /UG=Rn.18047 /UG_TITLE=ESTs BM386777 myosin VI Myo6 315840 XM_001061392 /// XM_236444 0006605 // protein targeting // not recorded /// 0006897 // endocytosis // not recorded /// 0007268 // synaptic transmission // not recorded /// 0007416 // synapse assembly // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0007626 // locomotory behavior // not recorded /// 0014047 // glutamate secretion // not recorded /// 0016358 // dendrite development // not recorded /// 0030330 // DNA damage response, signal transduction by p53 class mediator // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0042491 // auditory receptor cell differentiation // not recorded /// 0042493 // response to drug // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048167 // regulation of synaptic plasticity // not recorded /// 0048839 // inner ear development // not recorded /// 0051046 // regulation of secretion // not recorded 0001726 // ruffle // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005902 // microvillus // inferred from direct assay /// 0012506 // vesicle membrane // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0016459 // myosin complex // inferred from electronic annotation /// 0016591 // DNA-directed RNA polymerase II, holoenzyme // not recorded /// 0030139 // endocytic vesicle // inferred from direct assay /// 0030424 // axon // not recorded /// 0031941 // filamentous actin // not recorded /// 0031965 // nuclear membrane // not recorded /// 0032587 // ruffle membrane // inferred from direct assay /// 0043025 // neuronal cell body // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0045177 // apical part of cell // inferred from direct assay /// 0045334 // clathrin-coated endocytic vesicle // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1376805_at BF559331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559331 /DB_XREF=gi:11669061 /DB_XREF=UI-R-E1-fb-c-04-0-UI.r1 /CLONE=UI-R-E1-fb-c-04-0-UI /FEA=EST /CNT=6 /TID=Rn.19719.1 /TIER=ConsEnd /STK=4 /UG=Rn.19719 /UG_TITLE=ESTs BF559331 1376806_at BF403853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403853 /DB_XREF=gi:11391828 /DB_XREF=UI-R-CA1-bix-l-03-0-UI.s1 /CLONE=UI-R-CA1-bix-l-03-0-UI /FEA=EST /CNT=6 /TID=Rn.42977.1 /TIER=ConsEnd /STK=4 /UG=Rn.42977 /UG_TITLE=ESTs BF403853 1376807_at BF417476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417476 /DB_XREF=gi:11405465 /DB_XREF=UI-R-CN0-blg-e-12-0-UI.s1 /CLONE=UI-R-CN0-blg-e-12-0-UI /FEA=EST /CNT=6 /TID=Rn.16990.1 /TIER=ConsEnd /STK=4 /UG=Rn.16990 /UG_TITLE=ESTs BF417476 RAB, member of RAS oncogene family-like 3 Rabl3 360720 NM_001108319 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1376808_at BG672572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672572 /DB_XREF=gi:13894671 /DB_XREF=DRNCLE11 /CLONE=DRNCLE11 /FEA=EST /CNT=6 /TID=Rn.21871.1 /TIER=ConsEnd /STK=4 /UG=Rn.21871 /UG_TITLE=ESTs BG672572 1376809_at BI288660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288660 /DB_XREF=gi:14945464 /DB_XREF=UI-R-DK0-cdd-e-01-0-UI.s1 /CLONE=UI-R-DK0-cdd-e-01-0-UI /FEA=EST /CNT=6 /TID=Rn.24267.1 /TIER=ConsEnd /STK=4 /UG=Rn.24267 /UG_TITLE=ESTs, Weakly similar to T00065 hypothetical protein KIAA0442 (H.sapiens) BI288660 fibrosin-like 1 Fbrsl1 304572 XM_001080689 /// XM_222254 1376810_at AI103325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103325 /DB_XREF=gi:4134159 /DB_XREF=EST212614 /CLONE=REMCA66 /FEA=EST /CNT=6 /TID=Rn.24295.1 /TIER=ConsEnd /STK=4 /UG=Rn.24295 /UG_TITLE=ESTs, Moderately similar to PPOV_HUMAN Vault poly(ADP-ribose) polymerase (VPARP) (193-kDa vault protein) (PARP-relatedIalphaI-related H5proline-rich) (PH5P) (H.sapiens) AI103325 M-phase phosphoprotein 8 /// poly (ADP-ribose) polymerase family, member 4 Mphosph8 /// Parp4 290270 /// 361046 NM_001017375 /// XM_001059899 /// XM_341326 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006464 // protein modification process // not recorded /// 0006471 // protein ADP-ribosylation // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0007004 // telomere maintenance via telomerase // not recorded /// 0008219 // cell death // inferred from electronic annotation /// 0008219 // cell death // not recorded 0000785 // chromatin // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded 0003682 // chromatin binding // inferred from electronic annotation /// 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from electronic annotation /// 0003950 // NAD+ ADP-ribosyltransferase activity // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded 1376811_a_at BE108383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108383 /DB_XREF=gi:8500488 /DB_XREF=UI-R-BS1-ayv-f-07-0-UI.s1 /CLONE=UI-R-BS1-ayv-f-07-0-UI /FEA=EST /CNT=6 /TID=Rn.22372.1 /TIER=ConsEnd /STK=4 /UG=Rn.22372 /UG_TITLE=ESTs, Highly similar to S57447 HPBRII-7 protein (H.sapiens) BE108383 cleavage and polyadenylation specific factor 6 Cpsf6 299811 NM_001106785 0006397 // mRNA processing // not recorded 0005849 // mRNA cleavage factor complex // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0042382 // paraspeckles // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // not recorded 1376812_at BF419731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419731 /DB_XREF=gi:11407720 /DB_XREF=UI-R-CA0-bpf-e-12-0-UI.s1 /CLONE=UI-R-CA0-bpf-e-12-0-UI /FEA=EST /CNT=6 /TID=Rn.11860.1 /TIER=ConsEnd /STK=4 /UG=Rn.11860 /UG_TITLE=ESTs BF419731 1376813_at BI295955 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295955 /DB_XREF=gi:14959918 /DB_XREF=UI-R-DK0-cfc-f-12-0-UI.s1 /CLONE=UI-R-DK0-cfc-f-12-0-UI /FEA=EST /CNT=6 /TID=Rn.41065.1 /TIER=ConsEnd /STK=4 /UG=Rn.41065 /UG_TITLE=ESTs, Weakly similar to R155.1.p (Caenorhabditis elegans) (C.elegans) BI295955 lysophosphatidylcholine acyltransferase 3 Lpcat3 362434 NM_001012189 0008654 // phospholipid biosynthetic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0047184 // 1-acylglycerophosphocholine O-acyltransferase activity // inferred from electronic annotation 1376814_at BE107949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107949 /DB_XREF=gi:8500054 /DB_XREF=UI-R-CA0-awy-f-06-0-UI.s1 /CLONE=UI-R-CA0-awy-f-06-0-UI /FEA=EST /CNT=6 /TID=Rn.50879.1 /TIER=ConsEnd /STK=4 /UG=Rn.50879 /UG_TITLE=ESTs BE107949 1376815_at BF401000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401000 /DB_XREF=gi:11388975 /DB_XREF=UI-R-CA0-bgi-d-04-0-UI.s1 /CLONE=UI-R-CA0-bgi-d-04-0-UI /FEA=EST /CNT=6 /TID=Rn.44901.1 /TIER=ConsEnd /STK=4 /UG=Rn.44901 /UG_TITLE=ESTs BF401000 Storkhead box 2 Stox2 306459 NM_001134863 /// NM_173107 1376816_at BF284903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284903 /DB_XREF=gi:11215973 /DB_XREF=EST449494 /CLONE=RGIEX60 /FEA=EST /CNT=6 /TID=Rn.15992.1 /TIER=ConsEnd /STK=4 /UG=Rn.15992 /UG_TITLE=ESTs BF284903 1376817_at AA943165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943165 /DB_XREF=gi:3103081 /DB_XREF=EST198664 /CLONE=RBRAF95 /FEA=EST /CNT=6 /TID=Rn.32505.1 /TIER=ConsEnd /STK=4 /UG=Rn.32505 /UG_TITLE=ESTs AA943165 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006428 // isoleucyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004822 // isoleucine-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1376818_at BI291177 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291177 /DB_XREF=gi:14950475 /DB_XREF=UI-R-DK0-cgh-e-07-0-UI.s1 /CLONE=UI-R-DK0-cgh-e-07-0-UI /FEA=EST /CNT=6 /TID=Rn.23184.1 /TIER=ConsEnd /STK=4 /UG=Rn.23184 /UG_TITLE=ESTs, Weakly similar to four and a half LIM domains 2 (Rattus norvegicus) (R.norvegicus) BI291177 Wilms tumor 1 interacting protein Wtip 361552 XM_001079532 /// XM_341839 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376819_at AW434109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434109 /DB_XREF=gi:6965416 /DB_XREF=UI-R-BJ0p-afd-d-02-0-UI.s1 /CLONE=UI-R-BJ0p-afd-d-02-0-UI /FEA=EST /CNT=6 /TID=Rn.23038.1 /TIER=ConsEnd /STK=4 /UG=Rn.23038 /UG_TITLE=ESTs AW434109 Family with sequence similarity 84, member B Fam84b 315019 XM_001065586 /// XM_235349 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // not recorded 1376820_at AI045220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045220 /DB_XREF=gi:3292039 /DB_XREF=UI-R-C1-ju-h-08-0-UI.s1 /CLONE=UI-R-C1-ju-h-08-0-UI /FEA=EST /CNT=6 /TID=Rn.16154.1 /TIER=ConsEnd /STK=4 /UG=Rn.16154 /UG_TITLE=ESTs AI045220 1376821_at BE101619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101619 /DB_XREF=gi:8493717 /DB_XREF=UI-R-BT1-aqg-b-06-0-UI.s1 /CLONE=UI-R-BT1-aqg-b-06-0-UI /FEA=EST /CNT=6 /TID=Rn.49285.1 /TIER=ConsEnd /STK=4 /UG=Rn.49285 /UG_TITLE=ESTs BE101619 transmembrane inner ear Tmie 501061 NM_001109299 0007605 // sensory perception of sound // not recorded /// 0042472 // inner ear morphogenesis // not recorded 1376822_at BI297481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297481 /DB_XREF=gi:14962897 /DB_XREF=UI-R-CV2-chc-g-07-0-UI.s1 /CLONE=UI-R-CV2-chc-g-07-0-UI /FEA=EST /CNT=6 /TID=Rn.79913.1 /TIER=ConsEnd /STK=4 /UG=Rn.79913 /UG_TITLE=ESTs BI297481 1376823_at AI599269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599269 /DB_XREF=gi:4608317 /DB_XREF=EST250972 /CLONE=REMEP81 /FEA=EST /CNT=6 /TID=Rn.19488.1 /TIER=ConsEnd /STK=4 /UG=Rn.19488 /UG_TITLE=ESTs AI599269 Fibronectin type III domain containing 3a Fndc3a 306022 NM_001107278 0007286 // spermatid development // not recorded /// 0009566 // fertilization // not recorded /// 0016337 // cell-cell adhesion // not recorded /// 0060009 // Sertoli cell development // not recorded 0001669 // acrosomal vesicle // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // not recorded /// 0012506 // vesicle membrane // not recorded /// 0031410 // cytoplasmic vesicle // not recorded /// 0042598 // vesicular fraction // not recorded 1376824_at AI408131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408131 /DB_XREF=gi:4251635 /DB_XREF=EST236421 /CLONE=ROVEF44 /FEA=EST /CNT=6 /TID=Rn.38607.1 /TIER=ConsEnd /STK=4 /UG=Rn.38607 /UG_TITLE=ESTs AI408131 1376825_at BF557258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557258 /DB_XREF=gi:11666988 /DB_XREF=UI-R-C0-gu-b-07-0-UI.r1 /CLONE=UI-R-C0-gu-b-07-0-UI /FEA=EST /CNT=6 /TID=Rn.11770.1 /TIER=ConsEnd /STK=4 /UG=Rn.11770 /UG_TITLE=ESTs BF557258 1376826_at AI071535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071535 /DB_XREF=gi:3397750 /DB_XREF=UI-R-C1-ky-b-09-0-UI.s2 /CLONE=UI-R-C1-ky-b-09-0-UI /FEA=EST /CNT=6 /TID=Rn.19469.1 /TIER=ConsEnd /STK=4 /UG=Rn.19469 /UG_TITLE=ESTs AI071535 COX11 homolog, cytochrome c oxidase assembly protein (yeast) Cox11 690300 NM_001109575 0005739 // mitochondrion // not recorded 0005507 // copper ion binding // inferred from electronic annotation 1376827_at BE111290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111290 /DB_XREF=gi:8503395 /DB_XREF=UI-R-BJ1-ava-a-11-0-UI.s1 /CLONE=UI-R-BJ1-ava-a-11-0-UI /FEA=EST /CNT=6 /TID=Rn.13058.1 /TIER=ConsEnd /STK=4 /UG=Rn.13058 /UG_TITLE=ESTs BE111290 echinoderm microtubule associated protein like 4 Eml4 313861 NM_001108008 0005515 // protein binding // not recorded 1376828_at BI276110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276110 /DB_XREF=gi:14920707 /DB_XREF=UI-R-CX0-bwz-c-01-0-UI.s1 /CLONE=UI-R-CX0-bwz-c-01-0-UI /FEA=EST /CNT=6 /TID=Rn.23566.1 /TIER=ConsEnd /STK=4 /UG=Rn.23566 /UG_TITLE=ESTs BI276110 G protein-coupled receptor, family C, group 5, member A Gprc5a 312790 NM_001079890 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1376829_at AI716500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716500 /DB_XREF=gi:5033753 /DB_XREF=UI-R-Y0-ach-g-11-0-UI.s1 /CLONE=UI-R-Y0-ach-g-11-0-UI /FEA=EST /CNT=6 /TID=Rn.39005.1 /TIER=ConsEnd /STK=4 /UG=Rn.39005 /UG_TITLE=ESTs AI716500 1376830_at AW520496 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520496 /DB_XREF=gi:7162874 /DB_XREF=UI-R-BJ0p-afx-b-08-0-UI.s1 /CLONE=UI-R-BJ0p-afx-b-08-0-UI /FEA=EST /CNT=6 /TID=Rn.25353.1 /TIER=ConsEnd /STK=4 /UG=Rn.25353 /UG_TITLE=ESTs, Weakly similar to TNP2_HUMAN TUMOR NECROSIS FACTOR, ALPHA-INDUCED PROTEIN 2 (H.sapiens) AW520496 exocyst complex component 3-like Exoc3l 291961 NM_001106178 0006887 // exocytosis // not recorded /// 0030072 // peptide hormone secretion // not recorded 0000145 // exocyst // not recorded /// 0030141 // stored secretory granule // not recorded 0005515 // protein binding // not recorded 1376831_at AI712694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712694 /DB_XREF=gi:5016494 /DB_XREF=UI-R-AF1-aau-d-08-0-UI.s1 /CLONE=UI-R-AF1-aau-d-08-0-UI /FEA=EST /CNT=6 /TID=Rn.35007.1 /TIER=ConsEnd /STK=4 /UG=Rn.35007 /UG_TITLE=ESTs AI712694 family with sequence similarity 64, member A Fam64a 360559 NM_001113781 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376832_at AA800763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800763 /DB_XREF=gi:2863718 /DB_XREF=EST190260 /CLONE=RLUAL17 /FEA=EST /CNT=6 /TID=Rn.6636.1 /TIER=ConsEnd /STK=4 /UG=Rn.6636 /UG_TITLE=ESTs AA800763 1376833_at AW525740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525740 /DB_XREF=gi:7168125 /DB_XREF=UI-R-BJ0p-air-c-08-0-UI.s1 /CLONE=UI-R-BJ0p-air-c-08-0-UI /FEA=EST /CNT=6 /TID=Rn.13124.1 /TIER=ConsEnd /STK=4 /UG=Rn.13124 /UG_TITLE=ESTs AW525740 transmembrane protein 222 Tmem222 313021 NM_001113780 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376834_at AI407992 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407992 /DB_XREF=gi:4251496 /DB_XREF=EST236282 /CLONE=RPLDJ76 /FEA=EST /CNT=6 /TID=Rn.16238.1 /TIER=ConsEnd /STK=4 /UG=Rn.16238 /UG_TITLE=ESTs AI407992 1376835_at BI293600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293600 /DB_XREF=gi:14955248 /DB_XREF=UI-R-DK0-cds-d-11-0-UI.s1 /CLONE=UI-R-DK0-cds-d-11-0-UI /FEA=EST /CNT=6 /TID=Rn.23601.1 /TIER=ConsEnd /STK=4 /UG=Rn.23601 /UG_TITLE=ESTs BI293600 Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon Nfkbie 316241 NM_199111 0042942 // D-serine transport // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376836_at BF419655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419655 /DB_XREF=gi:11407644 /DB_XREF=UI-R-CA0-bpe-f-10-0-UI.s1 /CLONE=UI-R-CA0-bpe-f-10-0-UI /FEA=EST /CNT=6 /TID=Rn.63595.1 /TIER=ConsEnd /STK=4 /UG=Rn.63595 /UG_TITLE=ESTs BF419655 1376837_at BE109381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109381 /DB_XREF=gi:8501486 /DB_XREF=UI-R-BJ1-aur-d-07-0-UI.s1 /CLONE=UI-R-BJ1-aur-d-07-0-UI /FEA=EST /CNT=6 /TID=Rn.17292.1 /TIER=ConsEnd /STK=4 /UG=Rn.17292 /UG_TITLE=ESTs BE109381 hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) H6pd 298655 NM_001106698 0005975 // carbohydrate metabolic process // inferred from direct assay /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006098 // pentose-phosphate shunt // inferred from electronic annotation /// 0006098 // pentose-phosphate shunt // not recorded /// 0006739 // NADP metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004345 // glucose-6-phosphate dehydrogenase activity // inferred from direct assay /// 0004345 // glucose-6-phosphate dehydrogenase activity // inferred from electronic annotation /// 0004345 // glucose-6-phosphate dehydrogenase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from direct assay /// 0017057 // 6-phosphogluconolactonase activity // inferred from electronic annotation /// 0017057 // 6-phosphogluconolactonase activity // not recorded /// 0050661 // NADP or NADPH binding // inferred from direct assay /// 0050661 // NADP or NADPH binding // inferred from electronic annotation 1376838_at AW525290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525290 /DB_XREF=gi:7167640 /DB_XREF=UI-R-BJ0p-aip-e-12-0-UI.s1 /CLONE=UI-R-BJ0p-aip-e-12-0-UI /FEA=EST /CNT=6 /TID=Rn.37940.1 /TIER=ConsEnd /STK=4 /UG=Rn.37940 /UG_TITLE=ESTs AW525290 ring finger protein 207 Rnf207 691246 XM_001075996 /// XM_002726663 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376839_at AA866321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866321 /DB_XREF=gi:4229476 /DB_XREF=UI-R-A0-bm-e-08-0-UI.s1 /CLONE=UI-R-A0-bm-e-08-0-UI /FEA=EST /CNT=6 /TID=Rn.3062.1 /TIER=ConsEnd /STK=4 /UG=Rn.3062 /UG_TITLE=ESTs AA866321 1376840_at AI103040 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103040 /DB_XREF=gi:3707645 /DB_XREF=EST212329 /CLONE=REMBW43 /FEA=EST /CNT=6 /TID=Rn.22444.1 /TIER=ConsEnd /STK=4 /UG=Rn.22444 /UG_TITLE=ESTs AI103040 1376841_at AW253217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253217 /DB_XREF=gi:6596808 /DB_XREF=UI-R-BJ0-adv-h-11-0-UI.s1 /CLONE=UI-R-BJ0-adv-h-11-0-UI /FEA=EST /CNT=6 /TID=Rn.39212.1 /TIER=ConsEnd /STK=4 /UG=Rn.39212 /UG_TITLE=ESTs, Weakly similar to I37356 epithelial microtubule-associated protein, 115K (H.sapiens) AW253217 MAP7 domain containing 1 Map7d1 681287 NM_001109438 1376842_at BF395964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395964 /DB_XREF=gi:11380935 /DB_XREF=UI-R-BS2-bdt-f-04-0-UI.s1 /CLONE=UI-R-BS2-bdt-f-04-0-UI /FEA=EST /CNT=6 /TID=Rn.13464.1 /TIER=ConsEnd /STK=4 /UG=Rn.13464 /UG_TITLE=ESTs BF395964 1376843_at BE118651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118651 /DB_XREF=gi:8510756 /DB_XREF=UI-R-BS1-azr-b-11-0-UI.s1 /CLONE=UI-R-BS1-azr-b-11-0-UI /FEA=EST /CNT=6 /TID=Rn.41375.1 /TIER=ConsEnd /STK=4 /UG=Rn.41375 /UG_TITLE=ESTs, Highly similar to BMR2_MOUSE Bone morphogenetic protein receptor type II precursor (BMP type II receptor) (BMPR-II) (BRK-3) (M.musculus) BE118651 bone morphogenetic protein receptor, type II (serine/threonine kinase) Bmpr2 140590 NM_080407 0001707 // mesoderm formation // inferred from electronic annotation /// 0001707 // mesoderm formation // not recorded /// 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0003085 // negative regulation of systemic arterial blood pressure // inferred from electronic annotation /// 0003085 // negative regulation of systemic arterial blood pressure // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // not recorded /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // inferred from electronic annotation /// 0009267 // cellular response to starvation // inferred from electronic annotation /// 0009267 // cellular response to starvation // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0010595 // positive regulation of endothelial cell migration // inferred from electronic annotation /// 0010595 // positive regulation of endothelial cell migration // not recorded /// 0010634 // positive regulation of epithelial cell migration // inferred from electronic annotation /// 0010634 // positive regulation of epithelial cell migration // not recorded /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0014916 // regulation of lung blood pressure // inferred from electronic annotation /// 0014916 // regulation of lung blood pressure // not recorded /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0030501 // positive regulation of bone mineralization // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // not recorded /// 0030509 // BMP signaling pathway // not recorded /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030513 // positive regulation of BMP signaling pathway // inferred from electronic annotation /// 0030513 // positive regulation of BMP signaling pathway // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045906 // negative regulation of vasoconstriction // not recorded /// 0048010 // vascular endothelial growth factor receptor signaling pathway // not recorded /// 0048286 // lung alveolus development // not recorded 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005901 // caveola // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004675 // transmembrane receptor protein serine/threonine kinase activity // inferred from mutant phenotype /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from mutant phenotype 1376844_at BI298352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298352 /DB_XREF=gi:14974632 /DB_XREF=UI-R-CV2-cho-c-08-0-UI.s1 /CLONE=UI-R-CV2-cho-c-08-0-UI /FEA=EST /CNT=6 /TID=Rn.79908.1 /TIER=ConsEnd /STK=4 /UG=Rn.79908 /UG_TITLE=ESTs, Weakly similar to A3B1_MOUSE Adapter-related protein complex 3 beta 1 subunit (Beta-adaptin 3A) (AP-3 complex beta-3A subunit) (Beta-3A-adaptin) (M.musculus) BI298352 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0044431 // Golgi apparatus part // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 1376845_at AA819034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819034 /DB_XREF=gi:4227699 /DB_XREF=UI-R-A0-ba-e-12-0-UI.s1 /CLONE=UI-R-A0-ba-e-12-0-UI /FEA=EST /CNT=6 /TID=Rn.16842.1 /TIER=ConsEnd /STK=4 /UG=Rn.16842 /UG_TITLE=ESTs, Weakly similar to AF154572 1 ERG2 protein (R.norvegicus) AA819034 interferon, alpha-inducible protein 27 like 2B Ifi27l2b 299269 NM_206846 0016021 // integral to membrane // inferred from electronic annotation 1376846_at AI013385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013385 /DB_XREF=gi:3227441 /DB_XREF=EST208060 /CLONE=RSPBK32 /FEA=EST /CNT=6 /TID=Rn.17588.1 /TIER=ConsEnd /STK=4 /UG=Rn.17588 /UG_TITLE=ESTs AI013385 1376847_at BI302283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302283 /DB_XREF=gi:14978563 /DB_XREF=UI-R-DM0-ciq-i-07-0-UI.s1 /CLONE=UI-R-DM0-ciq-i-07-0-UI /FEA=EST /CNT=6 /TID=Rn.26676.1 /TIER=ConsEnd /STK=4 /UG=Rn.26676 /UG_TITLE=ESTs, Weakly similar to F56A11.5.p (Caenorhabditis elegans) (C.elegans) BI302283 MOCO sulphurase C-terminal domain containing 1 Mosc1 690745 NM_001100811 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0030151 // molybdenum ion binding // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1376848_at AI137988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137988 /DB_XREF=gi:3638765 /DB_XREF=UI-R-C2p-oi-a-11-0-UI.s1 /CLONE=UI-R-C2p-oi-a-11-0-UI /FEA=EST /CNT=6 /TID=Rn.20885.1 /TIER=ConsEnd /STK=4 /UG=Rn.20885 /UG_TITLE=ESTs, Highly similar to A59297 myosin X - mouse (M.musculus) AI137988 1376849_at BM384872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384872 /DB_XREF=gi:18184925 /DB_XREF=UI-R-DY0-ckl-f-02-0-UI.s1 /CLONE=UI-R-DY0-ckl-f-02-0-UI /FEA=EST /CNT=6 /TID=Rn.40620.1 /TIER=ConsEnd /STK=4 /UG=Rn.40620 /UG_TITLE=ESTs BM384872 ubiquitin specific peptidase 48 Usp48 362636 NM_198785 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from direct assay 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1376850_a_at AI058901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058901 /DB_XREF=gi:3332678 /DB_XREF=UI-R-C1-ks-b-04-0-UI.s1 /CLONE=UI-R-C1-ks-b-04-0-UI /FEA=EST /CNT=6 /TID=Rn.19015.1 /TIER=ConsEnd /STK=4 /UG=Rn.19015 /UG_TITLE=ESTs, Moderately similar to SY27 MOUSE SMALL INDUCIBLE CYTOKINE A27 PRECURSOR (M.musculus) AI058901 chemokine (C-C motif) ligand 27 Ccl27 362505 NM_001108660 0006955 // immune response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annotation 1376851_at AW520324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520324 /DB_XREF=gi:7162710 /DB_XREF=UI-R-BJ0p-aex-d-04-0-UI.s1 /CLONE=UI-R-BJ0p-aex-d-04-0-UI /FEA=EST /CNT=6 /TID=Rn.7532.1 /TIER=ConsEnd /STK=4 /UG=Rn.7532 /UG_TITLE=ESTs, Weakly similar to T14318 ubiquitin-protein ligase E3-alpha - mouse (M.musculus) AW520324 1376852_at BI274460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274460 /DB_XREF=gi:14885394 /DB_XREF=UI-R-CW0-bwj-b-06-0-UI.s1 /CLONE=UI-R-CW0-bwj-b-06-0-UI /FEA=EST /CNT=6 /TID=Rn.15587.1 /TIER=ConsEnd /STK=4 /UG=Rn.15587 /UG_TITLE=ESTs, Weakly similar to T21641 hypothetical protein F32B6.2 - Caenorhabditis elegans (C.elegans) BI274460 methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) Mccc1 294972 NM_001009653 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004485 // methylcrotonoyl-CoA carboxylase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0009374 // biotin binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1376853_at BG380641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380641 /DB_XREF=gi:13305113 /DB_XREF=UI-R-CT0-btz-f-10-0-UI.s1 /CLONE=UI-R-CT0-btz-f-10-0-UI /FEA=EST /CNT=6 /TID=Rn.49051.1 /TIER=ConsEnd /STK=4 /UG=Rn.49051 /UG_TITLE=ESTs BG380641 RNA polymerase II associated protein 3 Rpap3 300189 NM_001004243 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity 0005488 // binding // inferred from electronic annotation 1376854_at BE110028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110028 /DB_XREF=gi:8502133 /DB_XREF=UI-R-CA0-axj-b-11-0-UI.s1 /CLONE=UI-R-CA0-axj-b-11-0-UI /FEA=EST /CNT=6 /TID=Rn.14682.1 /TIER=ConsEnd /STK=4 /UG=Rn.14682 /UG_TITLE=ESTs BE110028 1376855_at BE104776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104776 /DB_XREF=gi:8496876 /DB_XREF=UI-R-BX0-art-d-08-0-UI.s1 /CLONE=UI-R-BX0-art-d-08-0-UI /FEA=EST /CNT=6 /TID=Rn.22636.1 /TIER=ConsEnd /STK=4 /UG=Rn.22636 /UG_TITLE=ESTs, Weakly similar to T29947 hypothetical protein T20D4.7 - Caenorhabditis elegans (C.elegans) BE104776 Nucleoredoxin Nxn 360577 NM_001108285 0008152 // metabolic process // not recorded /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005634 // nucleus // not recorded 0004791 // thioredoxin-disulfide reductase activity // not recorded /// 0016209 // antioxidant activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1376856_at AI111579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111579 /DB_XREF=gi:3511306 /DB_XREF=UI-R-C2-nm-b-08-0-UI.s2 /CLONE=UI-R-C2-nm-b-08-0-UI /FEA=EST /CNT=6 /TID=Rn.12987.1 /TIER=ConsEnd /STK=4 /UG=Rn.12987 /UG_TITLE=ESTs AI111579 similar to hypothetical protein FLJ23263 RGD1310414 290811 NM_001013883 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008747 // N-acetylneuraminate lyase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation 1376857_at BF413976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413976 /DB_XREF=gi:11401965 /DB_XREF=UI-R-BJ2-bol-a-04-0-UI.s1 /CLONE=UI-R-BJ2-bol-a-04-0-UI /FEA=EST /CNT=6 /TID=Rn.40386.1 /TIER=ConsEnd /STK=4 /UG=Rn.40386 /UG_TITLE=ESTs BF413976 Similar to C11orf17 protein RGD1306959 361624 NM_001108497 0005515 // protein binding // not recorded 1376858_at BI281836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281836 /DB_XREF=gi:14931985 /DB_XREF=UI-R-CU0s-cbt-b-05-0-UI.s1 /CLONE=UI-R-CU0s-cbt-b-05-0-UI /FEA=EST /CNT=10 /TID=Rn.55432.1 /TIER=ConsEnd /STK=4 /UG=Rn.55432 /UG_TITLE=ESTs BI281836 similar to protein 7 transactivated by hepatitis B virus X antigen LOC686809 686809 XM_001075804 1376859_at BM384750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384750 /DB_XREF=gi:18184803 /DB_XREF=UI-R-CN1-cjl-n-03-0-UI.s2 /CLONE=UI-R-CN1-cjl-n-03-0-UI /FEA=EST /CNT=9 /TID=Rn.1936.1 /TIER=ConsEnd /STK=4 /UG=Rn.1936 /UG_TITLE=ESTs BM384750 1376860_at BE105713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105713 /DB_XREF=gi:8497855 /DB_XREF=UI-R-BO1-asi-f-08-0-UI.s1 /CLONE=UI-R-BO1-asi-f-08-0-UI /FEA=EST /CNT=9 /TID=Rn.45804.1 /TIER=ConsEnd /STK=4 /UG=Rn.45804 /UG_TITLE=ESTs BE105713 solute carrier family 22, member 23 Slc22a23 64559 NM_022624 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1376861_at AW525240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525240 /DB_XREF=gi:7167625 /DB_XREF=UI-R-BJ0p-aip-d-08-0-UI.s1 /CLONE=UI-R-BJ0p-aip-d-08-0-UI /FEA=EST /CNT=9 /TID=Rn.3309.1 /TIER=ConsEnd /STK=4 /UG=Rn.3309 /UG_TITLE=ESTs AW525240 motile sperm domain containing 1 Mospd1 317312 NM_001014107 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 1376862_at BI296848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296848 /DB_XREF=gi:14961683 /DB_XREF=UI-R-DK0-cgg-c-02-0-UI.s1 /CLONE=UI-R-DK0-cgg-c-02-0-UI /FEA=EST /CNT=9 /TID=Rn.18962.1 /TIER=ConsEnd /STK=4 /UG=Rn.18962 /UG_TITLE=ESTs, Highly similar to T00358 hypothetical protein KIAA0684 (H.sapiens) BI296848 ubiquitination factor E4B (UFD2 homolog, yeast) Ube4b 298652 XM_001075491 /// XM_233679 0000209 // protein polyubiquitination // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0009411 // response to UV // not recorded 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019899 // enzyme binding // not recorded /// 0034450 // ubiquitin-ubiquitin ligase activity // inferred from electronic annotation /// 0034450 // ubiquitin-ubiquitin ligase activity // not recorded 1376863_at BE109118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109118 /DB_XREF=gi:8501223 /DB_XREF=UI-R-BS1-azb-b-09-0-UI.s1 /CLONE=UI-R-BS1-azb-b-09-0-UI /FEA=EST /CNT=8 /TID=Rn.12861.1 /TIER=ConsEnd /STK=4 /UG=Rn.12861 /UG_TITLE=ESTs, Weakly similar to D2085.5.p (Caenorhabditis elegans) (C.elegans) BE109118 similar to RIKEN cDNA B230339M05 gene RGD1306861 362257 XM_002729241 1376864_at BF396386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396386 /DB_XREF=gi:11381358 /DB_XREF=UI-R-BS2-bdx-e-06-0-UI.s1 /CLONE=UI-R-BS2-bdx-e-06-0-UI /FEA=EST /CNT=8 /TID=Rn.19916.1 /TIER=ConsEnd /STK=4 /UG=Rn.19916 /UG_TITLE=ESTs BF396386 cell division cycle and apoptosis regulator 1 Ccar1 361849 NM_001108535 0008380 // RNA splicing // not recorded /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005794 // Golgi apparatus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1376865_at AI228240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228240 /DB_XREF=gi:3812127 /DB_XREF=EST224935 /CLONE=RBRCS31 /FEA=EST /CNT=8 /TID=Rn.49261.1 /TIER=ConsEnd /STK=4 /UG=Rn.49261 /UG_TITLE=ESTs AI228240 1376866_at BI274923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274923 /DB_XREF=gi:14886291 /DB_XREF=UI-R-CW0-bwe-f-09-0-UI.s1 /CLONE=UI-R-CW0-bwe-f-09-0-UI /FEA=EST /CNT=7 /TID=Rn.49103.1 /TIER=ConsEnd /STK=4 /UG=Rn.49103 /UG_TITLE=ESTs BI274923 CD3e molecule, epsilon associated protein Cd3eap 680493 NM_001109416 0009303 // rRNA transcription // not recorded 0005730 // nucleolus // not recorded /// 0005736 // DNA-directed RNA polymerase I complex // not recorded 0005515 // protein binding // not recorded 1376867_at BE095833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095833 /DB_XREF=gi:8486764 /DB_XREF=UI-R-BU0-apb-b-01-0-UI.s1 /CLONE=UI-R-BU0-apb-b-01-0-UI /FEA=EST /CNT=7 /TID=Rn.19533.1 /TIER=ConsEnd /STK=4 /UG=Rn.19533 /UG_TITLE=ESTs, Weakly similar to LEG9 RAT GALECTIN-9 (R.norvegicus) BE095833 galectin-related protein Hspc159 360983 NM_001134730 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 0005529 // sugar binding // inferred from electronic annotation 1376868_at BM389293 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389293 /DB_XREF=gi:18189346 /DB_XREF=UI-R-DZ0-cko-h-02-0-UI.s1 /CLONE=UI-R-DZ0-cko-h-02-0-UI /FEA=EST /CNT=7 /TID=Rn.38124.1 /TIER=ConsEnd /STK=4 /UG=Rn.38124 /UG_TITLE=ESTs BM389293 Cobl-like 1 Cobll1 311088 NM_001107733 1376869_at BE108193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108193 /DB_XREF=gi:8500263 /DB_XREF=UI-R-BS1-ayw-b-03-0-UI.s1 /CLONE=UI-R-BS1-ayw-b-03-0-UI /FEA=EST /CNT=7 /TID=Rn.24772.1 /TIER=ConsEnd /STK=4 /UG=Rn.24772 /UG_TITLE=ESTs, Weakly similar to BCE1_HUMAN BCE-1 PROTEIN (H.sapiens) BE108193 1376870_at BI288076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288076 /DB_XREF=gi:14944303 /DB_XREF=UI-R-CS0s-cbk-a-12-0-UI.s2 /CLONE=UI-R-CS0s-cbk-a-12-0-UI /FEA=EST /CNT=7 /TID=Rn.23355.1 /TIER=ConsEnd /STK=4 /UG=Rn.23355 /UG_TITLE=ESTs, Weakly similar to A47236 zinc-finger protein Pur-1 - mouse (M.musculus) BI288076 zinc finger protein 278 Zfp278 305471 NM_001107231 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376871_at AA891475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891475 /DB_XREF=gi:3018354 /DB_XREF=EST195278 /CLONE=RHEAU83 /FEA=EST /CNT=7 /TID=Rn.3456.1 /TIER=ConsEnd /STK=4 /UG=Rn.3456 /UG_TITLE=ESTs AA891475 similar to paired immunoglobin-like type 2 receptor beta /// similar to paired immunoglobin-like type 2 receptor beta /// similar to cell surface receptor FDFACT /// similar to cell surface receptor FDFACT /// similar to cell surface receptor FDFACT /// similar to cell surface receptor FDFACT /// similar to paired immunoglobin-like type 2 receptor beta LOC681196 /// LOC685305 /// RGD1559677 /// RGD1560262 /// RGD1561143 /// RGD1562525 /// RGD1566006 304382 /// 363890 /// 363899 /// 501825 /// 501828 /// 681196 /// 685305 XM_001060713 /// XM_001063237 /// XM_002724796 /// XM_002724799 /// XM_002724830 /// XM_002727950 /// XM_222031 /// XM_344088 /// XM_344096 /// XM_577240 1376872_at BF283556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283556 /DB_XREF=gi:11214626 /DB_XREF=EST448147 /CLONE=RGIED85 /FEA=EST /CNT=7 /TID=Rn.7829.1 /TIER=ConsEnd /STK=4 /UG=Rn.7829 /UG_TITLE=ESTs BF283556 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1376873_at AI227829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227829 /DB_XREF=gi:3811716 /DB_XREF=EST224524 /CLONE=RBRCM27 /FEA=EST /CNT=7 /TID=Rn.9530.1 /TIER=ConsEnd /STK=4 /UG=Rn.9530 /UG_TITLE=ESTs, Weakly similar to BD3 MOUSE BRAIN PROTEIN D3 (M.musculus) AI227829 cerebellin 1 precursor Cbln1 498922 NM_001109127 0005576 // extracellular region // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1376874_a_at BF560100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF560100 /DB_XREF=gi:11669830 /DB_XREF=UI-R-A1-ew-g-02-0-UI.r1 /CLONE=UI-R-A1-ew-g-02-0-UI /FEA=EST /CNT=1 /TID=Rn.8746.2 /TIER=ConsEnd /STK=0 /UG=Rn.8746 /UG_TITLE=ESTs, Highly similar to A4B1_MOUSE Adapter-related protein complex 4 beta 1 subunit (Beta subunit of AP-4) (AP-4 adapter complex beta subunit) (M.musculus) BF560100 adaptor-related protein complex 4, beta 1 subunit Ap4b1 310746 NM_001107709 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005802 // trans-Golgi network // not recorded /// 0030117 // membrane coat // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation 1376875_at AI454691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454691 /DB_XREF=gi:4295496 /DB_XREF=UI-R-BT0-qk-f-01-0-UI.s1 /CLONE=UI-R-BT0-qk-f-01-0-UI /FEA=EST /CNT=7 /TID=Rn.35087.1 /TIER=ConsEnd /STK=4 /UG=Rn.35087 /UG_TITLE=ESTs, Weakly similar to TRF1_HUMAN TELOMERIC REPEAT BINDING FACTOR (H.sapiens) AI454691 telomeric repeat binding factor 2 Terf2 361403 NM_001108448 0000723 // telomere maintenance // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0007004 // telomere maintenance via telomerase // inferred from electronic annotation /// 0010834 // telomere maintenance via telomere shortening // not recorded /// 0016233 // telomere capping // not recorded /// 0031627 // telomeric loop formation // not recorded /// 0031848 // protection from non-homologous end joining at telomere // not recorded /// 0032205 // negative regulation of telomere maintenance // not recorded /// 0032206 // positive regulation of telomere maintenance // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0070198 // protein localization to chromosome, telomeric region // not recorded 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0000781 // chromosome, telomeric region // not recorded /// 0000783 // nuclear telomere cap complex // not recorded /// 0000784 // nuclear chromosome, telomeric region // not recorded /// 0001673 // male germ cell nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0030870 // Mre11 complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003691 // double-stranded telomeric DNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0042162 // telomeric DNA binding // inferred from electronic annotation /// 0042162 // telomeric DNA binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1376876_at BI295030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295030 /DB_XREF=gi:14958066 /DB_XREF=UI-R-DK0-cee-h-11-0-UI.s1 /CLONE=UI-R-DK0-cee-h-11-0-UI /FEA=EST /CNT=7 /TID=Rn.13662.1 /TIER=ConsEnd /STK=4 /UG=Rn.13662 /UG_TITLE=ESTs BI295030 1376877_at AA893164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893164 /DB_XREF=gi:3020043 /DB_XREF=EST196967 /CLONE=RKIBD01 /FEA=EST /CNT=7 /TID=Rn.7729.1 /TIER=ConsEnd /STK=4 /UG=Rn.7729 /UG_TITLE=ESTs AA893164 CUB domain containing protein 1 Cdcp1 301082 NM_001106869 1376878_at AI103552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103552 /DB_XREF=gi:3708085 /DB_XREF=EST212841 /CLONE=REMCD38 /FEA=EST /CNT=7 /TID=Rn.6137.1 /TIER=ConsEnd /STK=4 /UG=Rn.6137 /UG_TITLE=ESTs AI103552 similar to RIKEN cDNA 2310022B05 RGD1559896 498967 NM_001109134 1376879_at AI716916 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716916 /DB_XREF=gi:5034172 /DB_XREF=UI-R-Y0-aci-g-02-0-UI.s1 /CLONE=UI-R-Y0-aci-g-02-0-UI /FEA=EST /CNT=7 /TID=Rn.9361.1 /TIER=ConsEnd /STK=4 /UG=Rn.9361 /UG_TITLE=ESTs AI716916 RWD domain containing 4A Rwdd4a 502084 NM_001034994 1376880_at AI639447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639447 /DB_XREF=gi:4700481 /DB_XREF=rx02652s /CLONE=rx02652 /FEA=EST /CNT=7 /TID=Rn.30683.1 /TIER=ConsEnd /STK=4 /UG=Rn.30683 /UG_TITLE=ESTs AI639447 TANK-binding kinase 1 Tbk1 299827 NM_001106786 0002218 // activation of innate immune response // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded /// 0010629 // negative regulation of gene expression // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0045359 // positive regulation of interferon-beta biosynthetic process // not recorded /// 0050830 // defense response to Gram-positive bacterium // not recorded 0010008 // endosome membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0051219 // phosphoprotein binding // not recorded 1376881_at AW528057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528057 /DB_XREF=gi:7170471 /DB_XREF=UI-R-BT1-akh-b-11-0-UI.s1 /CLONE=UI-R-BT1-akh-b-11-0-UI /FEA=EST /CNT=7 /TID=Rn.46998.1 /TIER=ConsEnd /STK=4 /UG=Rn.46998 /UG_TITLE=ESTs AW528057 1376882_at BF398580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398580 /DB_XREF=gi:11383574 /DB_XREF=UI-R-BS2-beq-e-01-0-UI.s1 /CLONE=UI-R-BS2-beq-e-01-0-UI /FEA=EST /CNT=6 /TID=Rn.28469.1 /TIER=ConsEnd /STK=4 /UG=Rn.28469 /UG_TITLE=ESTs BF398580 similar to RIKEN cDNA B230339M05 gene RGD1306861 362257 XM_002729241 1376883_at BI284887 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284887 /DB_XREF=gi:14937977 /DB_XREF=UI-R-CX0s-cct-d-09-0-UI.s1 /CLONE=UI-R-CX0s-cct-d-09-0-UI /FEA=EST /CNT=6 /TID=Rn.1266.1 /TIER=ConsEnd /STK=4 /UG=Rn.1266 /UG_TITLE=ESTs, Weakly similar to RS12 MOUSE 40S RIBOSOMAL PROTEIN S12 (R.norvegicus) BI284887 phosphatase, orphan 2 Phospho2 295663 NM_001007642 0008152 // metabolic process // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0033883 // pyridoxal phosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376884_a_at BE111378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111378 /DB_XREF=gi:8503483 /DB_XREF=UI-R-BJ1-auy-b-01-0-UI.s1 /CLONE=UI-R-BJ1-auy-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.16548.2 /TIER=ConsEnd /STK=1 /UG=Rn.16548 /UG_TITLE=ESTs, Moderately similar to RL3 RAT 60S RIBOSOMAL PROTEIN L3 (R.norvegicus) BE111378 ribosomal protein L3-like Rpl3l 287122 NM_001191589 /// XM_001058430 /// XM_213231 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1376885_at BE095660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095660 /DB_XREF=gi:8486591 /DB_XREF=UI-R-BO1-apo-f-12-0-UI.s1 /CLONE=UI-R-BO1-apo-f-12-0-UI /FEA=EST /CNT=6 /TID=Rn.24070.1 /TIER=ConsEnd /STK=4 /UG=Rn.24070 /UG_TITLE=ESTs BE095660 1376886_at AW533838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533838 /DB_XREF=gi:7176252 /DB_XREF=UI-R-BU0-anc-g-01-0-UI.s1 /CLONE=UI-R-BU0-anc-g-01-0-UI /FEA=EST /CNT=6 /TID=Rn.48188.1 /TIER=ConsEnd /STK=4 /UG=Rn.48188 /UG_TITLE=ESTs AW533838 1376887_at AI555799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555799 /DB_XREF=gi:4488162 /DB_XREF=UI-R-C2p-qz-d-04-0-UI.s1 /CLONE=UI-R-C2p-qz-d-04-0-UI /FEA=EST /CNT=6 /TID=Rn.28577.1 /TIER=ConsEnd /STK=4 /UG=Rn.28577 /UG_TITLE=ESTs AI555799 zinc finger protein 445 Zfp445 301076 NM_001191802 /// XM_001078410 /// XM_236726 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376888_a_at AI501092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501092 /DB_XREF=gi:4398943 /DB_XREF=UI-R-C2p-rw-d-08-0-UI.s1 /CLONE=UI-R-C2p-rw-d-08-0-UI /FEA=EST /CNT=6 /TID=Rn.26793.1 /TIER=ConsEnd /STK=4 /UG=Rn.26793 /UG_TITLE=ESTs, Moderately similar to I58377 LTG19 (H.sapiens) AI501092 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1 Mllt1 301119 NM_001106876 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1376889_at AI599549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599549 /DB_XREF=gi:4608597 /DB_XREF=EST251252 /CLONE=REMET38 /FEA=EST /CNT=6 /TID=Rn.40246.1 /TIER=ConsEnd /STK=4 /UG=Rn.40246 /UG_TITLE=ESTs AI599549 1376890_at BE117326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117326 /DB_XREF=gi:8509431 /DB_XREF=UI-R-BS1-ayn-e-01-0-UI.s1 /CLONE=UI-R-BS1-ayn-e-01-0-UI /FEA=EST /CNT=6 /TID=Rn.38031.1 /TIER=ConsEnd /STK=4 /UG=Rn.38031 /UG_TITLE=ESTs BE117326 G4 protein G4 406868 NM_001003975 1376891_at AA818282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818282 /DB_XREF=gi:4198791 /DB_XREF=UI-R-A0-ax-d-06-0-UI.s1 /CLONE=UI-R-A0-ax-d-06-0-UI /FEA=EST /CNT=6 /TID=Rn.34212.1 /TIER=ConsEnd /STK=4 /UG=Rn.34212 /UG_TITLE=ESTs AA818282 1376892_at AI102061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102061 /DB_XREF=gi:3706895 /DB_XREF=EST211350 /CLONE=RBRBY45 /FEA=EST /CNT=6 /TID=Rn.13679.1 /TIER=ConsEnd /STK=4 /UG=Rn.13679 /UG_TITLE=ESTs AI102061 glutamate receptor, ionotrophic, AMPA 3 Gria3 29628 NM_001112742 /// NM_032990 0001919 // regulation of receptor recycling // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007616 // long-term memory // inferred from mutant phenotype /// 0009636 // response to toxin // inferred from mutant phenotype /// 0010226 // response to lithium ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0021510 // spinal cord development // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0042220 // response to cocaine // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045838 // positive regulation of membrane potential // inferred from mutant phenotype /// 0046685 // response to arsenic // inferred from expression pattern /// 0051602 // response to electrical stimulus // inferred from expression pattern /// 0060992 // response to fungicide // inferred from expression pattern /// 0071230 // cellular response to amino acid stimulus // inferred from expression pattern /// 0071359 // cellular response to dsRNA // inferred from expression pattern /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern /// 0071375 // cellular response to peptide hormone stimulus // inferred from expression pattern /// 0071407 // cellular response to organic cyclic substance // inferred from expression pattern /// 0071418 // cellular response to amine stimulus // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0008328 // ionotropic glutamate receptor complex // traceable author statement /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0030666 // endocytic vesicle membrane // not recorded /// 0031594 // neuromuscular junction // inferred from direct assay /// 0032279 // asymmetric synapse // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043083 // synaptic cleft // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0043234 // protein complex // inferred from physical interaction /// 0043234 // protein complex // inferred from direct assay /// 0044309 // neuron spine // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0001965 // G-protein alpha-subunit binding // inferred from physical interaction /// 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from direct assay /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0004971 // alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity // inferred from direct assay /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008179 // adenylate cyclase binding // inferred from direct assay /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0031267 // small GTPase binding // inferred from physical interaction /// 0031489 // myosin V binding // inferred from physical interaction /// 0031681 // G-protein beta-subunit binding // inferred from direct assay /// 0031698 // beta-2 adrenergic receptor binding // inferred from physical interaction /// 0051018 // protein kinase A binding // inferred from direct assay 1376893_at AI406821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406821 /DB_XREF=gi:4250325 /DB_XREF=EST235108 /CLONE=RBRDI79 /FEA=EST /CNT=6 /TID=Rn.43769.1 /TIER=ConsEnd /STK=4 /UG=Rn.43769 /UG_TITLE=ESTs AI406821 neurensin 1 Nrsn1 291129 NM_001106109 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0030426 // growth cone // inferred from electronic annotation /// 0030426 // growth cone // not recorded /// 0043005 // neuron projection // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded 1376894_at AA849956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849956 /DB_XREF=gi:4131777 /DB_XREF=EST192723 /CLONE=RMUAL07 /FEA=EST /CNT=6 /TID=Rn.4047.1 /TIER=ConsEnd /STK=4 /UG=Rn.4047 /UG_TITLE=ESTs AA849956 pallidin homolog (mouse) Pldn 317630 NM_001025714 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0006944 // cellular membrane fusion // inferred from electronic annotation /// 0006944 // cellular membrane fusion // not recorded /// 0007596 // blood coagulation // inferred from electronic annotation /// 0007596 // blood coagulation // not recorded /// 0016044 // cellular membrane organization // not recorded /// 0030318 // melanocyte differentiation // inferred from electronic annotation /// 0030318 // melanocyte differentiation // not recorded /// 0032816 // positive regulation of natural killer cell activation // inferred from electronic annotation /// 0032816 // positive regulation of natural killer cell activation // not recorded /// 0033299 // secretion of lysosomal enzymes // inferred from electronic annotation /// 0033299 // secretion of lysosomal enzymes // not recorded /// 0043473 // pigmentation // inferred from electronic annotation /// 0043473 // pigmentation // not recorded 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1376895_at AI137163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137163 /DB_XREF=gi:3637940 /DB_XREF=UI-R-C2p-oh-c-11-0-UI.s1 /CLONE=UI-R-C2p-oh-c-11-0-UI /FEA=EST /CNT=6 /TID=Rn.6265.1 /TIER=ConsEnd /STK=4 /UG=Rn.6265 /UG_TITLE=ESTs AI137163 interleukin 16 Il16 116996 NM_001105749 0030595 // leukocyte chemotaxis // not recorded /// 0050930 // induction of positive chemotaxis // not recorded 0005622 // intracellular // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376896_at AI227699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227699 /DB_XREF=gi:3811586 /DB_XREF=EST224394 /CLONE=RBRCK38 /FEA=EST /CNT=6 /TID=Rn.12784.1 /TIER=ConsEnd /STK=4 /UG=Rn.12784 /UG_TITLE=ESTs AI227699 Similar to RIKEN cDNA 1810074P20 RGD1309308 313115 NM_001126279 0031397 // negative regulation of protein ubiquitination // inferred from sequence or structural similarity /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity /// 0071569 // protein ufmylation // not recorded /// 0071569 // protein ufmylation // inferred from sequence or structural similarity /// 0071569 // protein ufmylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0071568 // UFM1 conjugating enzyme activity // not recorded /// 0071568 // UFM1 conjugating enzyme activity // inferred from sequence or structural similarity /// 0071568 // UFM1 conjugating enzyme activity // inferred from electronic annotation 1376897_at BF414052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414052 /DB_XREF=gi:11402041 /DB_XREF=UI-R-BJ2-bol-h-01-0-UI.s1 /CLONE=UI-R-BJ2-bol-h-01-0-UI /FEA=EST /CNT=6 /TID=Rn.53082.1 /TIER=ConsEnd /STK=4 /UG=Rn.53082 /UG_TITLE=ESTs, Weakly similar to T17319 hypothetical protein DKFZp434N178.1 (H.sapiens) BF414052 kinesin family member 26B Kif26b 305012 NM_001109079 0007018 // microtubule-based movement // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1376898_at AI172467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172467 /DB_XREF=gi:3712507 /DB_XREF=EST218478 /CLONE=RMUCA22 /FEA=EST /CNT=6 /TID=Rn.22515.1 /TIER=ConsEnd /STK=4 /UG=Rn.22515 /UG_TITLE=ESTs AI172467 1376899_at BF407154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407154 /DB_XREF=gi:11395129 /DB_XREF=UI-R-BJ2-bqw-c-10-0-UI.s1 /CLONE=UI-R-BJ2-bqw-c-10-0-UI /FEA=EST /CNT=6 /TID=Rn.38027.1 /TIER=ConsEnd /STK=4 /UG=Rn.38027 /UG_TITLE=ESTs BF407154 coiled-coil domain containing 106 Ccdc106 499071 XM_001059637 /// XM_574352 1376900_at BM390531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390531 /DB_XREF=gi:18190584 /DB_XREF=UI-R-CN1-cjr-c-03-0-UI.s1 /CLONE=UI-R-CN1-cjr-c-03-0-UI /FEA=EST /CNT=6 /TID=Rn.50459.1 /TIER=ConsEnd /STK=4 /UG=Rn.50459 /UG_TITLE=ESTs, Weakly similar to S67155 hypothetical protein YOR258w - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BM390531 aprataxin Aptx 259271 NM_148889 0000012 // single strand break repair // inferred from electronic annotation /// 0000012 // single strand break repair // not recorded /// 0006266 // DNA ligation // inferred from electronic annotation /// 0006266 // DNA ligation // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006302 // double-strand break repair // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0031647 // regulation of protein stability // inferred from electronic annotation /// 0031647 // regulation of protein stability // not recorded /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // not recorded 0000785 // chromatin // inferred from electronic annotation /// 0000785 // chromatin // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // not recorded /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // not recorded /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008967 // phosphoglycolate phosphatase activity // inferred from electronic annotation /// 0008967 // phosphoglycolate phosphatase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0033699 // DNA 5'-adenosine monophosphate hydrolase activity // inferred from electronic annotation /// 0033699 // DNA 5'-adenosine monophosphate hydrolase activity // not recorded /// 0046403 // polynucleotide 3'-phosphatase activity // inferred from electronic annotation /// 0046403 // polynucleotide 3'-phosphatase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1376901_a_at AA964675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964675 /DB_XREF=gi:4279549 /DB_XREF=UI-R-E1-gq-a-06-0-UI.s1 /CLONE=UI-R-E1-gq-a-06-0-UI /FEA=EST /CNT=1 /TID=Rn.11884.3 /TIER=ConsEnd /STK=0 /UG=Rn.11884 /UG_TITLE=ESTs AA964675 Extracellular leucine-rich repeat and fibronectin type III domain containing 2 Elfn2 315117 XR_085885 /// XR_086301 0005634 // nucleus // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 1376902_x_at AA964675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964675 /DB_XREF=gi:4279549 /DB_XREF=UI-R-E1-gq-a-06-0-UI.s1 /CLONE=UI-R-E1-gq-a-06-0-UI /FEA=EST /CNT=1 /TID=Rn.11884.3 /TIER=ConsEnd /STK=0 /UG=Rn.11884 /UG_TITLE=ESTs AA964675 Extracellular leucine-rich repeat and fibronectin type III domain containing 2 Elfn2 315117 XR_085885 /// XR_086301 0005634 // nucleus // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 1376903_at BF400799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400799 /DB_XREF=gi:11388814 /DB_XREF=UI-R-CA0-bhg-d-02-0-UI.s1 /CLONE=UI-R-CA0-bhg-d-02-0-UI /FEA=EST /CNT=6 /TID=Rn.11884.1 /TIER=ConsEnd /STK=4 /UG=Rn.11884 /UG_TITLE=ESTs BF400799 1376904_at AI716115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716115 /DB_XREF=gi:5033416 /DB_XREF=UI-R-Y0-abd-g-10-0-UI.s1 /CLONE=UI-R-Y0-abd-g-10-0-UI /FEA=EST /CNT=6 /TID=Rn.38935.1 /TIER=ConsEnd /STK=4 /UG=Rn.38935 /UG_TITLE=ESTs AI716115 transmembrane protein 151A Tmem151a 309158 NM_001107570 0016021 // integral to membrane // inferred from electronic annotation 1376905_at BI304147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI304147 /DB_XREF=gi:14980427 /DB_XREF=UI-R-DR0-cjc-p-05-0-UI.s1 /CLONE=UI-R-DR0-cjc-p-05-0-UI /FEA=EST /CNT=6 /TID=Rn.3706.1 /TIER=ConsEnd /STK=4 /UG=Rn.3706 /UG_TITLE=ESTs BI304147 1376906_at BM391974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391974 /DB_XREF=gi:18192027 /DB_XREF=UI-R-DO1-cmk-a-16-0-UI.s1 /CLONE=UI-R-DO1-cmk-a-16-0-UI /FEA=EST /CNT=6 /TID=Rn.32935.1 /TIER=ConsEnd /STK=4 /UG=Rn.32935 /UG_TITLE=ESTs BM391974 mediator complex subunit 1 Med1 497991 NM_001134361 0001701 // in utero embryonic development // not recorded /// 0001889 // liver development // not recorded /// 0001892 // embryonic placenta development // not recorded /// 0006260 // DNA replication // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006590 // thyroid hormone generation // not recorded /// 0006702 // androgen biosynthetic process // not recorded /// 0007275 // multicellular organismal development // not recorded /// 0007420 // brain development // not recorded /// 0007507 // heart development // not recorded /// 0007595 // lactation // not recorded /// 0009887 // organ morphogenesis // not recorded /// 0030518 // steroid hormone receptor signaling pathway // not recorded /// 0030521 // androgen receptor signaling pathway // not recorded /// 0033601 // positive regulation of mammary gland epithelial cell proliferation // not recorded /// 0035050 // embryonic heart tube development // not recorded /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0035162 // embryonic hemopoiesis // not recorded /// 0043010 // camera-type eye development // not recorded /// 0045444 // fat cell differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060744 // mammary gland branching involved in thelarche // not recorded /// 0060745 // mammary gland branching involved in pregnancy // not recorded /// 0060750 // epithelial cell proliferation involved in mammary gland duct elongation // not recorded 0005634 // nucleus // not recorded /// 0016592 // mediator complex // inferred from electronic annotation /// 0016592 // mediator complex // not recorded 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003712 // transcription cofactor activity // not recorded /// 0003713 // transcription coactivator activity // not recorded /// 0004872 // receptor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation /// 0016455 // RNA polymerase II transcription mediator activity // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016922 // ligand-dependent nuclear receptor binding // not recorded /// 0030331 // estrogen receptor binding // not recorded /// 0035257 // nuclear hormone receptor binding // not recorded /// 0042809 // vitamin D receptor binding // not recorded /// 0042974 // retinoic acid receptor binding // not recorded /// 0042975 // peroxisome proliferator activated receptor binding // not recorded /// 0046966 // thyroid hormone receptor binding // not recorded 1376907_at AW521452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521452 /DB_XREF=gi:7163832 /DB_XREF=UI-R-BJ0p-afe-f-11-0-UI.s1 /CLONE=UI-R-BJ0p-afe-f-11-0-UI /FEA=EST /CNT=6 /TID=Rn.33024.1 /TIER=ConsEnd /STK=4 /UG=Rn.33024 /UG_TITLE=ESTs AW521452 1376908_at AW531805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531805 /DB_XREF=gi:7174219 /DB_XREF=UI-R-C4-akz-c-07-0-UI.s1 /CLONE=UI-R-C4-akz-c-07-0-UI /FEA=EST /CNT=6 /TID=Rn.35775.1 /TIER=ConsEnd /STK=4 /UG=Rn.35775 /UG_TITLE=ESTs, Moderately similar to S71356 glucocorticoid-attenuated response gene 49 protein - mouse (M.musculus) AW531805 interferon-induced protein with tetratricopeptide repeats 3 Ifit3 309526 NM_001007694 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376909_at AI412866 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412866 /DB_XREF=gi:4256370 /DB_XREF=EST241166 /CLONE=RBRED76 /FEA=EST /CNT=6 /TID=Rn.35397.1 /TIER=ConsEnd /STK=4 /UG=Rn.35397 /UG_TITLE=ESTs, Highly similar to RR22_HUMAN RAS-LIKE PROTEIN RRP22 (H.sapiens) AI412866 RAS-like, family 10, member A Rasl10a 364190 NM_001108862 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1376910_at AW529672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529672 /DB_XREF=gi:7172086 /DB_XREF=UI-R-BU0-amr-a-02-0-UI.s1 /CLONE=UI-R-BU0-amr-a-02-0-UI /FEA=EST /CNT=6 /TID=Rn.46303.1 /TIER=ConsEnd /STK=4 /UG=Rn.46303 /UG_TITLE=ESTs AW529672 zinc finger protein 536 Znf536 292820 XM_001077206 /// XM_218522 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1376911_at BM386385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386385 /DB_XREF=gi:18186438 /DB_XREF=UI-R-CN1-cjf-f-24-0-UI.s1 /CLONE=UI-R-CN1-cjf-f-24-0-UI /FEA=EST /CNT=6 /TID=Rn.45827.1 /TIER=ConsEnd /STK=4 /UG=Rn.45827 /UG_TITLE=ESTs BM386385 1376912_at BI290097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290097 /DB_XREF=gi:14948348 /DB_XREF=UI-R-DK0-cfr-g-09-0-UI.s1 /CLONE=UI-R-DK0-cfr-g-09-0-UI /FEA=EST /CNT=6 /TID=Rn.13473.1 /TIER=ConsEnd /STK=4 /UG=Rn.13473 /UG_TITLE=ESTs BI290097 hypothetical LOC287388 RGD1310324 287388 NM_001163492 0008270 // zinc ion binding // inferred from electronic annotation 1376913_at AA925375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925375 /DB_XREF=gi:4236566 /DB_XREF=UI-R-A1-ee-d-10-0-UI.s1 /CLONE=UI-R-A1-ee-d-10-0-UI /FEA=EST /CNT=6 /TID=Rn.15510.1 /TIER=ConsEnd /STK=4 /UG=Rn.15510 /UG_TITLE=ESTs AA925375 1376914_at AW253690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253690 /DB_XREF=gi:6597281 /DB_XREF=UI-R-BJ0-aes-b-11-0-UI.s1 /CLONE=UI-R-BJ0-aes-b-11-0-UI /FEA=EST /CNT=6 /TID=Rn.27037.1 /TIER=ConsEnd /STK=4 /UG=Rn.27037 /UG_TITLE=ESTs AW253690 DEP domain containing 1 Depdc1 295538 XM_001080406 /// XM_227798 0007165 // signal transduction // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 1376915_at AW913994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW913994 /DB_XREF=gi:8079665 /DB_XREF=EST294772 /CLONE=RGIZA26 /FEA=EST /CNT=6 /TID=Rn.22649.1 /TIER=ConsEnd /STK=4 /UG=Rn.22649 /UG_TITLE=ESTs AW913994 Hypothetical protein LOC679931 LOC679931 679931 XM_001054996 /// XM_001056792 1376916_at AW529183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529183 /DB_XREF=gi:7171597 /DB_XREF=UI-R-BO1-ajp-h-11-0-UI.s1 /CLONE=UI-R-BO1-ajp-h-11-0-UI /FEA=EST /CNT=6 /TID=Rn.44993.1 /TIER=ConsEnd /STK=4 /UG=Rn.44993 /UG_TITLE=ESTs AW529183 zinc finger and BTB domain containing 2 Zbtb2 308126 NM_001107460 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376917_at BF388585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388585 /DB_XREF=gi:11373409 /DB_XREF=UI-R-BS2-bdd-b-12-0-UI.s1 /CLONE=UI-R-BS2-bdd-b-12-0-UI /FEA=EST /CNT=5 /TID=Rn.19048.1 /TIER=ConsEnd /STK=4 /UG=Rn.19048 /UG_TITLE=ESTs BF388585 zinc finger protein 292 Znf292 50552 NM_001008879 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008134 // transcription factor binding // non-traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay 1376918_at AI029930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029930 /DB_XREF=gi:3247756 /DB_XREF=UI-R-C0-ja-c-08-0-UI.s1 /CLONE=UI-R-C0-ja-c-08-0-UI /FEA=EST /CNT=5 /TID=Rn.11698.1 /TIER=ConsEnd /STK=4 /UG=Rn.11698 /UG_TITLE=ESTs AI029930 1376919_at BG665267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665267 /DB_XREF=gi:13887189 /DB_XREF=DRACAF08 /CLONE=DRACAF08 /FEA=EST /CNT=5 /TID=Rn.21418.1 /TIER=ConsEnd /STK=4 /UG=Rn.21418 /UG_TITLE=ESTs BG665267 major facilitator superfamily domain containing 6 Mfsd6 301388 NM_001106911 0055085 // transmembrane transport // inferred from electronic annotation 1376920_at BF408536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408536 /DB_XREF=gi:11396511 /DB_XREF=UI-R-BJ2-bre-h-10-0-UI.s1 /CLONE=UI-R-BJ2-bre-h-10-0-UI /FEA=EST /CNT=5 /TID=Rn.16506.1 /TIER=ConsEnd /STK=4 /UG=Rn.16506 /UG_TITLE=ESTs BF408536 similar to sterile alpha motif domain containing 9-like LOC500013 500013 XR_005677 /// XR_008617 1376921_at BG381722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381722 /DB_XREF=gi:13306194 /DB_XREF=UI-R-CT0-bue-f-10-0-UI.s1 /CLONE=UI-R-CT0-bue-f-10-0-UI /FEA=EST /CNT=5 /TID=Rn.42737.1 /TIER=ConsEnd /STK=4 /UG=Rn.42737 /UG_TITLE=ESTs, Weakly similar to S12207 hypothetical protein (M.musculus) BG381722 0016491 // oxidoreductase activity // inferred from electronic annotation 1376922_at AW523772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523772 /DB_XREF=gi:7166157 /DB_XREF=UI-R-BO0-aih-h-09-0-UI.s1 /CLONE=UI-R-BO0-aih-h-09-0-UI /FEA=EST /CNT=5 /TID=Rn.18692.1 /TIER=ConsEnd /STK=4 /UG=Rn.18692 /UG_TITLE=ESTs AW523772 1376923_at AI717053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717053 /DB_XREF=gi:5034309 /DB_XREF=UI-R-Y0-acu-d-07-0-UI.s1 /CLONE=UI-R-Y0-acu-d-07-0-UI /FEA=EST /CNT=5 /TID=Rn.40893.1 /TIER=ConsEnd /STK=4 /UG=Rn.40893 /UG_TITLE=ESTs AI717053 1376924_a_at AI176360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176360 /DB_XREF=gi:3726998 /DB_XREF=EST219943 /CLONE=ROVBQ61 /FEA=EST /CNT=5 /TID=Rn.24602.1 /TIER=ConsEnd /STK=4 /UG=Rn.24602 /UG_TITLE=ESTs AI176360 palmdelphin Palmd 310811 NM_001025688 0008360 // regulation of cell shape // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1376925_at AI176360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176360 /DB_XREF=gi:3726998 /DB_XREF=EST219943 /CLONE=ROVBQ61 /FEA=EST /CNT=5 /TID=Rn.24602.1 /TIER=ConsEnd /STK=4 /UG=Rn.24602 /UG_TITLE=ESTs AI176360 palmdelphin Palmd 310811 NM_001025688 0008360 // regulation of cell shape // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1376926_at BF399634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399634 /DB_XREF=gi:11384643 /DB_XREF=UI-R-CA0-bhu-g-08-0-UI.s2 /CLONE=UI-R-CA0-bhu-g-08-0-UI /FEA=EST /CNT=5 /TID=Rn.61152.1 /TIER=ConsEnd /STK=4 /UG=Rn.61152 /UG_TITLE=ESTs BF399634 1376927_at BI294849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294849 /DB_XREF=gi:14957704 /DB_XREF=UI-R-DK0-cec-h-04-0-UI.s1 /CLONE=UI-R-DK0-cec-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.23332.1 /TIER=ConsEnd /STK=4 /UG=Rn.23332 /UG_TITLE=ESTs, Weakly similar to MAPE_HUMAN MELANOMA ANTIGEN PREFERENTIALLY EXPRESSED IN TUMORS (H.sapiens) BI294849 leucine rich repeat containing 14B Lrrc14b 502225 NM_001109333 0005515 // protein binding // inferred from electronic annotation 1376928_at BE106737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106737 /DB_XREF=gi:8498839 /DB_XREF=UI-R-BO1-asr-f-01-0-UI.s1 /CLONE=UI-R-BO1-asr-f-01-0-UI /FEA=EST /CNT=5 /TID=Rn.46819.1 /TIER=ConsEnd /STK=4 /UG=Rn.46819 /UG_TITLE=ESTs BE106737 1376929_at BF544829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF544829 /DB_XREF=gi:11635936 /DB_XREF=UI-R-C2p-sc-e-01-0-UI.r2 /CLONE=UI-R-C2p-sc-e-01-0-UI /FEA=EST /CNT=5 /TID=Rn.32333.1 /TIER=ConsEnd /STK=4 /UG=Rn.32333 /UG_TITLE=ESTs, Highly similar to I67849 tropomyosin - rat (R.norvegicus) BF544829 tropomyosin 3, gamma Tpm3 117557 NM_057208 /// NM_173111 0007420 // brain development // inferred from expression pattern 0002102 // podosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1376930_at BI294860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294860 /DB_XREF=gi:14957726 /DB_XREF=UI-R-DK0-ced-a-03-0-UI.s1 /CLONE=UI-R-DK0-ced-a-03-0-UI /FEA=EST /CNT=5 /TID=Rn.8504.1 /TIER=ConsEnd /STK=4 /UG=Rn.8504 /UG_TITLE=ESTs BI294860 mitochondrial ribosomal protein L51 Mrpl51 297601 NM_001106621 0006412 // translation // not recorded 0005739 // mitochondrion // not recorded /// 0005761 // mitochondrial ribosome // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // not recorded 1376931_at BG380736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380736 /DB_XREF=gi:13305208 /DB_XREF=UI-R-CT0-bua-h-01-0-UI.s1 /CLONE=UI-R-CT0-bua-h-01-0-UI /FEA=EST /CNT=5 /TID=Rn.38255.1 /TIER=ConsEnd /STK=4 /UG=Rn.38255 /UG_TITLE=ESTs BG380736 PHD finger protein 20 Phf20 311575 NM_001107795 0005622 // intracellular // inferred from electronic annotation /// 0071339 // MLL1 complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376932_at BI300388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300388 /DB_XREF=gi:14976668 /DB_XREF=UI-R-CV2-cie-d-07-0-UI.s1 /CLONE=UI-R-CV2-cie-d-07-0-UI /FEA=EST /CNT=5 /TID=Rn.15190.1 /TIER=ConsEnd /STK=4 /UG=Rn.15190 /UG_TITLE=ESTs BI300388 similar to RIKEN cDNA 2310002J15 RGD1560880 499747 NM_001109194 1376933_at AI170377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170377 /DB_XREF=gi:3710417 /DB_XREF=EST216303 /CLONE=RLUCH55 /FEA=EST /CNT=5 /TID=Rn.23214.1 /TIER=ConsEnd /STK=4 /UG=Rn.23214 /UG_TITLE=ESTs AI170377 1376934_x_at BI285801 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285801 /DB_XREF=gi:14939815 /DB_XREF=UI-R-CX0s-ccv-a-08-0-UI.s1 /CLONE=UI-R-CX0s-ccv-a-08-0-UI /FEA=EST /CNT=5 /TID=Rn.78602.1 /TIER=ConsEnd /STK=4 /UG=Rn.78602 /UG_TITLE=ESTs BI285801 1376935_at BE113667 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113667 /DB_XREF=gi:8505772 /DB_XREF=UI-R-BJ1-awg-h-11-0-UI.s1 /CLONE=UI-R-BJ1-awg-h-11-0-UI /FEA=EST /CNT=5 /TID=Rn.19631.1 /TIER=ConsEnd /STK=4 /UG=Rn.19631 /UG_TITLE=ESTs BE113667 1376936_at BI296215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296215 /DB_XREF=gi:14960434 /DB_XREF=UI-R-DK0-cex-f-10-0-UI.s1 /CLONE=UI-R-DK0-cex-f-10-0-UI /FEA=EST /CNT=5 /TID=Rn.13225.1 /TIER=ConsEnd /STK=4 /UG=Rn.13225 /UG_TITLE=ESTs BI296215 solute carrier family 24 (sodium/potassium/calcium exchanger), member 6 Slc24a6 498185 NM_001017488 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0015297 // antiporter activity // inferred from electronic annotation 1376937_at BM389685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389685 /DB_XREF=gi:18189738 /DB_XREF=UI-R-CN1-cjp-a-20-0-UI.s1 /CLONE=UI-R-CN1-cjp-a-20-0-UI /FEA=EST /CNT=5 /TID=Rn.8383.1 /TIER=ConsEnd /STK=4 /UG=Rn.8383 /UG_TITLE=ESTs BM389685 similar to 4631422O05Rik protein RGD1565927 304020 XM_001056823 /// XM_221535 1376938_at AI717081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717081 /DB_XREF=gi:5034337 /DB_XREF=UI-R-Y0-acu-g-02-0-UI.s1 /CLONE=UI-R-Y0-acu-g-02-0-UI /FEA=EST /CNT=5 /TID=Rn.63792.1 /TIER=ConsEnd /STK=4 /UG=Rn.63792 /UG_TITLE=ESTs AI717081 1376939_at BI284907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284907 /DB_XREF=gi:14938017 /DB_XREF=UI-R-CX0s-cct-f-09-0-UI.s1 /CLONE=UI-R-CX0s-cct-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.18481.1 /TIER=ConsEnd /STK=4 /UG=Rn.18481 /UG_TITLE=ESTs BI284907 1376940_at BI274420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274420 /DB_XREF=gi:14885315 /DB_XREF=UI-R-CW0-bwi-f-11-0-UI.s1 /CLONE=UI-R-CW0-bwi-f-11-0-UI /FEA=EST /CNT=5 /TID=Rn.26684.1 /TIER=ConsEnd /STK=4 /UG=Rn.26684 /UG_TITLE=ESTs BI274420 1376941_at BI274409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274409 /DB_XREF=gi:14885293 /DB_XREF=UI-R-CW0-bwi-e-12-0-UI.s1 /CLONE=UI-R-CW0-bwi-e-12-0-UI /FEA=EST /CNT=5 /TID=Rn.29259.1 /TIER=ConsEnd /STK=4 /UG=Rn.29259 /UG_TITLE=ESTs, Weakly similar to T14346 Herc2 protein - mouse (M.musculus) BI274409 Williams-Beuren syndrome chromosome region 16 homolog (human) Wbscr16 360796 NM_001108332 0005739 // mitochondrion // not recorded 1376942_at BF394140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394140 /DB_XREF=gi:11379004 /DB_XREF=UI-R-CA0-bha-b-06-0-UI.s1 /CLONE=UI-R-CA0-bha-b-06-0-UI /FEA=EST /CNT=5 /TID=Rn.31643.1 /TIER=ConsEnd /STK=4 /UG=Rn.31643 /UG_TITLE=ESTs BF394140 1376943_at BM386570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386570 /DB_XREF=gi:18186623 /DB_XREF=UI-R-CN1-cjg-i-16-0-UI.s1 /CLONE=UI-R-CN1-cjg-i-16-0-UI /FEA=EST /CNT=5 /TID=Rn.7907.1 /TIER=ConsEnd /STK=4 /UG=Rn.7907 /UG_TITLE=ESTs, Weakly similar to A38445 EV12B protein precursor (H.sapiens) BM386570 1376944_at AI407163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407163 /DB_XREF=gi:4250667 /DB_XREF=EST235451 /CLONE=ROVDS11 /FEA=EST /CNT=5 /TID=Rn.25476.1 /TIER=ConsEnd /STK=4 /UG=Rn.25476 /UG_TITLE=ESTs AI407163 1376945_at BI296435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296435 /DB_XREF=gi:14960856 /DB_XREF=UI-R-CV2-cgr-b-08-0-UI.s1 /CLONE=UI-R-CV2-cgr-b-08-0-UI /FEA=EST /CNT=5 /TID=Rn.41821.1 /TIER=ConsEnd /STK=4 /UG=Rn.41821 /UG_TITLE=ESTs BI296435 1376946_at BG380358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380358 /DB_XREF=gi:13304830 /DB_XREF=UI-R-CT0-btw-b-12-0-UI.s1 /CLONE=UI-R-CT0-btw-b-12-0-UI /FEA=EST /CNT=5 /TID=Rn.23622.1 /TIER=ConsEnd /STK=4 /UG=Rn.23622 /UG_TITLE=ESTs BG380358 1376947_at AI178158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178158 /DB_XREF=gi:3728796 /DB_XREF=EST221823 /CLONE=RPLCM94 /FEA=EST /CNT=5 /TID=Rn.24064.1 /TIER=ConsEnd /STK=4 /UG=Rn.24064 /UG_TITLE=ESTs AI178158 retinoblastoma binding protein 6 Rbbp6 308968 XM_001073098 /// XM_001076339 /// XM_001076360 /// XM_219296 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1376948_at BI281216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281216 /DB_XREF=gi:14930726 /DB_XREF=UI-R-CT0s-cat-g-05-0-UI.s1 /CLONE=UI-R-CT0s-cat-g-05-0-UI /FEA=EST /CNT=5 /TID=Rn.32618.1 /TIER=ConsEnd /STK=4 /UG=Rn.32618 /UG_TITLE=ESTs BI281216 zinc finger protein 646 Znf646 309003 XM_001080366 /// XM_219364 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1376949_at BE099848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099848 /DB_XREF=gi:8491730 /DB_XREF=UI-R-BJ1-atq-h-07-0-UI.s1 /CLONE=UI-R-BJ1-atq-h-07-0-UI /FEA=EST /CNT=5 /TID=Rn.6797.1 /TIER=ConsEnd /STK=4 /UG=Rn.6797 /UG_TITLE=ESTs, Highly similar to Ras and a-factor-converting enzyme 1 homolog (S. cerevisiae) (Mus musculus) (M.musculus) BE099848 RCE1 homolog, prenyl protein peptidase (S. cerevisiae) Rce1 309153 NM_001100585 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation 1376950_at BE098978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098978 /DB_XREF=gi:8490853 /DB_XREF=UI-R-BJ1-atf-a-02-0-UI.s1 /CLONE=UI-R-BJ1-atf-a-02-0-UI /FEA=EST /CNT=5 /TID=Rn.9608.1 /TIER=ConsEnd /STK=4 /UG=Rn.9608 /UG_TITLE=ESTs BE098978 de-etiolated homolog 1 (Arabidopsis) Det1 308775 NM_001037194 1376951_at AI101906 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101906 /DB_XREF=gi:3706752 /DB_XREF=EST211195 /CLONE=RBRBW66 /FEA=EST /CNT=5 /TID=Rn.19771.1 /TIER=ConsEnd /STK=4 /UG=Rn.19771 /UG_TITLE=ESTs AI101906 1376952_at BF398963 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398963 /DB_XREF=gi:11383966 /DB_XREF=UI-R-CA1-biz-c-20-0-UI.s1 /CLONE=UI-R-CA1-biz-c-20-0-UI /FEA=EST /CNT=5 /TID=Rn.64032.1 /TIER=ConsEnd /STK=4 /UG=Rn.64032 /UG_TITLE=ESTs BF398963 1376953_at BM389244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389244 /DB_XREF=gi:18189297 /DB_XREF=UI-R-DZ0-cko-m-06-0-UI.s1 /CLONE=UI-R-DZ0-cko-m-06-0-UI /FEA=EST /CNT=5 /TID=Rn.17973.1 /TIER=ConsEnd /STK=4 /UG=Rn.17973 /UG_TITLE=ESTs BM389244 unc-5 homolog C (C. elegans)-like Unc5cl 301225 NM_001106882 1376954_at BF406210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406210 /DB_XREF=gi:11394185 /DB_XREF=UI-R-CA1-bjf-e-06-0-UI.s1 /CLONE=UI-R-CA1-bjf-e-06-0-UI /FEA=EST /CNT=5 /TID=Rn.62083.1 /TIER=ConsEnd /STK=4 /UG=Rn.62083 /UG_TITLE=ESTs BF406210 1376955_at AI412936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412936 /DB_XREF=gi:4256440 /DB_XREF=EST241236 /CLONE=RKIEG62 /FEA=EST /CNT=5 /TID=Rn.22075.1 /TIER=ConsEnd /STK=4 /UG=Rn.22075 /UG_TITLE=ESTs, Weakly similar to COLLAGEN ALPHA 1(III) CHAIN (R.norvegicus) AI412936 collagen, type IV, alpha 4 Col4a4 301562 NM_001008332 0032836 // glomerular basement membrane development // not recorded 0005587 // collagen type IV // not recorded /// 0005604 // basement membrane // not recorded /// 0005605 // basal lamina // not recorded 0005201 // extracellular matrix structural constituent // not recorded /// 0005515 // protein binding // not recorded 1376956_at BE106664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106664 /DB_XREF=gi:8498766 /DB_XREF=UI-R-BO1-asq-f-12-0-UI.s1 /CLONE=UI-R-BO1-asq-f-12-0-UI /FEA=EST /CNT=5 /TID=Rn.46754.1 /TIER=ConsEnd /STK=4 /UG=Rn.46754 /UG_TITLE=ESTs BE106664 1376957_at AI178922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178922 /DB_XREF=gi:4135109 /DB_XREF=EST222604 /CLONE=RSPBT28 /FEA=EST /CNT=5 /TID=Rn.41205.1 /TIER=ConsEnd /STK=4 /UG=Rn.41205 /UG_TITLE=ESTs AI178922 leucine zipper and CTNNBIP1 domain containing Lzic 366507 NM_001013241 0010212 // response to ionizing radiation // inferred from expression pattern 0008013 // beta-catenin binding // inferred from electronic annotation 1376958_at BI274644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274644 /DB_XREF=gi:14885752 /DB_XREF=UI-R-CX0-bws-c-11-0-UI.s1 /CLONE=UI-R-CX0-bws-c-11-0-UI /FEA=EST /CNT=5 /TID=Rn.35280.1 /TIER=ConsEnd /STK=4 /UG=Rn.35280 /UG_TITLE=ESTs, Moderately similar to B59273 proteinase inhibitor 9 (H.sapiens) BI274644 similar to serine (or cysteine) proteinase inhibitor, clade B, member 9 RGD1562844 306892 XM_002725249 /// XM_002728468 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation 1376959_at BI285461 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285461 /DB_XREF=gi:14939122 /DB_XREF=UI-R-DD0-caa-d-07-0-UI.s1 /CLONE=UI-R-DD0-caa-d-07-0-UI /FEA=EST /CNT=5 /TID=Rn.19820.1 /TIER=ConsEnd /STK=4 /UG=Rn.19820 /UG_TITLE=ESTs, Weakly similar to CORA RAT CORNIFIN ALPHA (R.norvegicus) BI285461 small proline-rich protein 3 Sprr3 310575 NM_001107686 0005515 // protein binding // not recorded 1376960_at AA892240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892240 /DB_XREF=gi:3019119 /DB_XREF=EST196043 /CLONE=RKIAO09 /FEA=EST /CNT=5 /TID=Rn.64944.1 /TIER=ConsEnd /STK=4 /UG=Rn.64944 /UG_TITLE=ESTs, Weakly similar to 2008109A set gene (R.norvegicus) AA892240 1376961_at BG380772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380772 /DB_XREF=gi:13305244 /DB_XREF=UI-R-CT0-bub-c-04-0-UI.s1 /CLONE=UI-R-CT0-bub-c-04-0-UI /FEA=EST /CNT=5 /TID=Rn.47365.1 /TIER=ConsEnd /STK=4 /UG=Rn.47365 /UG_TITLE=ESTs BG380772 leucine rich repeat and fibronectin type III domain containing 2 Lrfn2 316205 NM_001039699 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1376962_at BI284420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284420 /DB_XREF=gi:14937083 /DB_XREF=UI-R-CX0s-cco-h-08-0-UI.s1 /CLONE=UI-R-CX0s-cco-h-08-0-UI /FEA=EST /CNT=5 /TID=Rn.12735.1 /TIER=ConsEnd /STK=4 /UG=Rn.12735 /UG_TITLE=ESTs BI284420 stimulated by retinoic acid gene 6 Stra6 363071 NM_001029924 0006810 // transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0004872 // receptor activity // inferred from electronic annotation 1376963_at BM388710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388710 /DB_XREF=gi:18188763 /DB_XREF=UI-R-DZ0-ckm-j-02-0-UI.s1 /CLONE=UI-R-DZ0-ckm-j-02-0-UI /FEA=EST /CNT=5 /TID=Rn.22658.1 /TIER=ConsEnd /STK=4 /UG=Rn.22658 /UG_TITLE=ESTs, Weakly similar to 2208359A protein kinase Dyrk (R.norvegicus) BM388710 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 Dyrk2 314862 NM_001108100 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded /// 0045725 // positive regulation of glycogen biosynthetic process // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000287 // magnesium ion binding // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0030145 // manganese ion binding // not recorded 1376964_at BM384263 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384263 /DB_XREF=gi:18184316 /DB_XREF=UI-R-DZ0-cks-k-07-0-UI.s1 /CLONE=UI-R-DZ0-cks-k-07-0-UI /FEA=EST /CNT=5 /TID=Rn.39019.1 /TIER=ConsEnd /STK=4 /UG=Rn.39019 /UG_TITLE=ESTs, Weakly similar to CX05_HUMAN PROTEIN CXORF5 (PROTEIN 71-7A) (H.sapiens) BM384263 oral-facial-digital syndrome 1 gene homolog (human) Ofd1 302661 NM_001106961 0007067 // mitosis // not recorded /// 0007099 // centriole replication // not recorded /// 0035083 // cilium axoneme assembly // not recorded /// 0060271 // cilium morphogenesis // not recorded /// 0060287 // cilium movement involved in determination of left/right asymmetry // not recorded /// 0090307 // spindle assembly involved in mitosis // not recorded 0005814 // centriole // not recorded /// 0005829 // cytosol // not recorded /// 0005929 // cilium // not recorded /// 0005932 // microtubule basal body // not recorded 0005515 // protein binding // not recorded /// 0043014 // alpha-tubulin binding // not recorded /// 0043015 // gamma-tubulin binding // not recorded 1376965_at BM389656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389656 /DB_XREF=gi:18189709 /DB_XREF=UI-R-CN1-cjo-m-05-0-UI.s1 /CLONE=UI-R-CN1-cjo-m-05-0-UI /FEA=EST /CNT=5 /TID=Rn.14813.1 /TIER=ConsEnd /STK=4 /UG=Rn.14813 /UG_TITLE=ESTs BM389656 1376966_at BE108930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108930 /DB_XREF=gi:8501035 /DB_XREF=UI-R-BS1-aza-a-08-0-UI.s1 /CLONE=UI-R-BS1-aza-a-08-0-UI /FEA=EST /CNT=5 /TID=Rn.24046.1 /TIER=ConsEnd /STK=4 /UG=Rn.24046 /UG_TITLE=ESTs BE108930 1376967_at AI176941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176941 /DB_XREF=gi:3727579 /DB_XREF=EST220547 /CLONE=ROVBY84 /FEA=EST /CNT=5 /TID=Rn.24135.1 /TIER=ConsEnd /STK=4 /UG=Rn.24135 /UG_TITLE=ESTs AI176941 1376968_at AW533848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533848 /DB_XREF=gi:7176262 /DB_XREF=UI-R-BU0-anc-g-12-0-UI.s1 /CLONE=UI-R-BU0-anc-g-12-0-UI /FEA=EST /CNT=5 /TID=Rn.26659.1 /TIER=ConsEnd /STK=4 /UG=Rn.26659 /UG_TITLE=ESTs, Weakly similar to 2020397A C protein (M.musculus) AW533848 myosin binding protein C, fast-type Mybpc2 292879 NM_001106257 0006936 // muscle contraction // not recorded 1376969_at BI275077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275077 /DB_XREF=gi:14886584 /DB_XREF=UI-R-CX0-bxb-d-05-0-UI.s1 /CLONE=UI-R-CX0-bxb-d-05-0-UI /FEA=EST /CNT=5 /TID=Rn.11963.1 /TIER=ConsEnd /STK=4 /UG=Rn.11963 /UG_TITLE=ESTs BI275077 1376970_at AW530127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530127 /DB_XREF=gi:7172541 /DB_XREF=UI-R-C4-ald-h-02-0-UI.s1 /CLONE=UI-R-C4-ald-h-02-0-UI /FEA=EST /CNT=5 /TID=Rn.41811.1 /TIER=ConsEnd /STK=4 /UG=Rn.41811 /UG_TITLE=ESTs AW530127 similar to RIKEN cDNA A130042E20; open reading frame 57 RGD1308722 361822 NM_001108529 0005739 // mitochondrion // not recorded 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1376971_at AI411341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411341 /DB_XREF=gi:4254845 /DB_XREF=EST239635 /CLONE=RKIEU45 /FEA=EST /CNT=5 /TID=Rn.41993.1 /TIER=ConsEnd /STK=4 /UG=Rn.41993 /UG_TITLE=ESTs AI411341 autophagy-related 10 (S. cerevisiae) Atg10 688555 NM_001109505 0006497 // protein lipidation // not recorded /// 0006914 // autophagy // not recorded /// 0031401 // positive regulation of protein modification process // not recorded /// 0032446 // protein modification by small protein conjugation // not recorded /// 0034263 // autophagy in response to ER overload // not recorded 0005622 // intracellular // not recorded 0005515 // protein binding // not recorded 1376972_at AI407028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407028 /DB_XREF=gi:4250532 /DB_XREF=EST235316 /CLONE=ROVDR70 /FEA=EST /CNT=5 /TID=Rn.11665.2 /TIER=ConsEnd /STK=4 /UG=Rn.11665 /UG_TITLE=ESTs AI407028 Solute carrier family 39 (iron-regulated transporter), member 1 Slc40a1 170840 NM_133315 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006826 // iron ion transport // non-traceable author statement /// 0006826 // iron ion transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005381 // iron ion transmembrane transporter activity // non-traceable author statement /// 0005381 // iron ion transmembrane transporter activity // inferred from electronic annotation 1376973_at BM386609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386609 /DB_XREF=gi:18186662 /DB_XREF=UI-R-CN1-cjg-b-05-0-UI.s1 /CLONE=UI-R-CN1-cjg-b-05-0-UI /FEA=EST /CNT=5 /TID=Rn.15848.1 /TIER=ConsEnd /STK=4 /UG=Rn.15848 /UG_TITLE=ESTs BM386609 syndecan binding protein (syntenin) 2 Sdcbp2 311532 NM_001025692 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1376974_at BG381669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381669 /DB_XREF=gi:13306141 /DB_XREF=UI-R-CT0-bue-a-06-0-UI.s1 /CLONE=UI-R-CT0-bue-a-06-0-UI /FEA=EST /CNT=5 /TID=Rn.16768.1 /TIER=ConsEnd /STK=4 /UG=Rn.16768 /UG_TITLE=ESTs BG381669 tetratricopeptide repeat domain 7 Ttc7 362696 NM_001100756 0006879 // cellular iron ion homeostasis // not recorded /// 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded /// 0030097 // hemopoiesis // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1376975_at AA849719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849719 /DB_XREF=gi:2937259 /DB_XREF=EST192486 /CLONE=RMUAI10 /FEA=EST /CNT=5 /TID=Rn.6502.1 /TIER=ConsEnd /STK=4 /UG=Rn.6502 /UG_TITLE=ESTs AA849719 1376976_at AI009823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009823 /DB_XREF=gi:4133124 /DB_XREF=EST204274 /CLONE=RLUBO90 /FEA=EST /CNT=5 /TID=Rn.25030.1 /TIER=ConsEnd /STK=4 /UG=Rn.25030 /UG_TITLE=ESTs AI009823 secreted and transmembrane 1B Sectm1b 287884 NM_199082 0006955 // immune response // non-traceable author statement 0016021 // integral to membrane // inferred from electronic annotation 1376977_at AI411541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411541 /DB_XREF=gi:4255045 /DB_XREF=EST239835 /CLONE=RKIEK23 /FEA=EST /CNT=5 /TID=Rn.44081.1 /TIER=ConsEnd /STK=4 /UG=Rn.44081 /UG_TITLE=ESTs AI411541 Prostaglandin E receptor 3 Ptger3 24929 NM_012704 0001660 // fever // inferred from electronic annotation /// 0001660 // fever // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from electronic annotation /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // not recorded /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0015701 // bicarbonate transport // inferred from electronic annotation /// 0015701 // bicarbonate transport // not recorded /// 0030146 // diuresis // inferred from electronic annotation /// 0030146 // diuresis // not recorded /// 0031622 // positive regulation of fever // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004955 // prostaglandin receptor activity // inferred from electronic annotation /// 0004957 // prostaglandin E receptor activity // inferred from electronic annotation /// 0004957 // prostaglandin E receptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1376978_at BM392214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392214 /DB_XREF=gi:18192267 /DB_XREF=UI-R-DO1-ckp-b-15-0-UI.s1 /CLONE=UI-R-DO1-ckp-b-15-0-UI /FEA=EST /CNT=5 /TID=Rn.40653.1 /TIER=ConsEnd /STK=4 /UG=Rn.40653 /UG_TITLE=ESTs BM392214 1376979_at BF393959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393959 /DB_XREF=gi:11378864 /DB_XREF=UI-R-CA0-bgx-f-09-0-UI.s1 /CLONE=UI-R-CA0-bgx-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.63316.1 /TIER=ConsEnd /STK=4 /UG=Rn.63316 /UG_TITLE=ESTs BF393959 1376980_at BF285539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285539 /DB_XREF=gi:11216519 /DB_XREF=EST450040 /CLONE=RGIFF63 /FEA=EST /CNT=5 /TID=Rn.21456.1 /TIER=ConsEnd /STK=4 /UG=Rn.21456 /UG_TITLE=ESTs BF285539 5-hydroxytryptamine (serotonin) receptor 2C Htr2c 25187 NM_012765 0006182 // cGMP biosynthetic process // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007187 // G-protein signaling, coupled to cyclic nucleotide second messenger // traceable author statement /// 0007208 // activation of phospholipase C activity by serotonin receptor signaling pathway // inferred from direct assay /// 0007210 // serotonin receptor signaling pathway // not recorded /// 0007631 // feeding behavior // inferred from mutant phenotype /// 0014054 // positive regulation of gamma-aminobutyric acid secretion // inferred from mutant phenotype /// 0014057 // positive regulation of acetylcholine secretion // inferred from mutant phenotype /// 0031100 // organ regeneration // inferred from expression pattern /// 0031583 // activation of phospholipase D activity by G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0035095 // behavioral response to nicotine // inferred from mutant phenotype /// 0040013 // negative regulation of locomotion // inferred from mutant phenotype /// 0042493 // response to drug // inferred from mutant phenotype /// 0042493 // response to drug // not recorded /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype /// 0045963 // negative regulation of dopamine metabolic process // inferred from mutant phenotype /// 0046489 // phosphoinositide biosynthetic process // not recorded /// 0048016 // inositol phosphate-mediated signaling // inferred from direct assay /// 0051209 // release of sequestered calcium ion into cytosol // not recorded /// 0051930 // regulation of sensory perception of pain // inferred from mutant phenotype /// 0070371 // ERK1 and ERK2 cascade // not recorded 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004435 // phosphoinositide phospholipase C activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // inferred from direct assay /// 0004993 // serotonin receptor activity // inferred from mutant phenotype /// 0004993 // serotonin receptor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008144 // drug binding // not recorded /// 0051378 // serotonin binding // not recorded 1376981_at BF400751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400751 /DB_XREF=gi:11388726 /DB_XREF=UI-R-CA0-bhf-b-05-0-UI.s1 /CLONE=UI-R-CA0-bhf-b-05-0-UI /FEA=EST /CNT=5 /TID=Rn.64166.1 /TIER=ConsEnd /STK=4 /UG=Rn.64166 /UG_TITLE=ESTs BF400751 1376982_at BI295869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295869 /DB_XREF=gi:14959757 /DB_XREF=UI-R-DK0-cfb-f-12-0-UI.s1 /CLONE=UI-R-DK0-cfb-f-12-0-UI /FEA=EST /CNT=5 /TID=Rn.20896.1 /TIER=ConsEnd /STK=4 /UG=Rn.20896 /UG_TITLE=ESTs BI295869 trinucleotide repeat containing 6B Tnrc6b 192178 NM_138845 0000166 // nucleotide binding // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation 1376983_at BF417687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417687 /DB_XREF=gi:11405676 /DB_XREF=UI-R-CN0-blr-a-03-0-UI.s1 /CLONE=UI-R-CN0-blr-a-03-0-UI /FEA=EST /CNT=5 /TID=Rn.9420.1 /TIER=ConsEnd /STK=4 /UG=Rn.9420 /UG_TITLE=ESTs, Weakly similar to TC17 RAT TRANSCRIPTION FACTOR 17 (R.norvegicus) BF417687 similar to zinc finger protein 455 LOC680200 680200 NM_001139491 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1376984_at AW915048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915048 /DB_XREF=gi:8080733 /DB_XREF=EST346352 /CLONE=RGIBN84 /FEA=EST /CNT=5 /TID=Rn.15480.1 /TIER=ConsEnd /STK=4 /UG=Rn.15480 /UG_TITLE=ESTs AW915048 1376985_at AA866482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866482 /DB_XREF=gi:4230008 /DB_XREF=UI-R-E0-br-h-09-0-UI.s1 /CLONE=UI-R-E0-br-h-09-0-UI /FEA=EST /CNT=5 /TID=Rn.3124.1 /TIER=ConsEnd /STK=4 /UG=Rn.3124 /UG_TITLE=ESTs, Highly similar to FGD1 MOUSE PUTATIVE RHORAC GUANINE NUCLEOTIDE EXCHANGE FACTOR (M.musculus) AA866482 TSR2, 20S rRNA accumulation, homolog (S. cerevisiae) Tsr2 317418 NM_001115027 0005515 // protein binding // inferred from electronic annotation 1376986_at BF412656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412656 /DB_XREF=gi:11400645 /DB_XREF=UI-R-BT1-bnq-e-03-0-UI.s1 /CLONE=UI-R-BT1-bnq-e-03-0-UI /FEA=EST /CNT=5 /TID=Rn.38260.1 /TIER=ConsEnd /STK=4 /UG=Rn.38260 /UG_TITLE=ESTs, Weakly similar to SPO8_YEAST TRANSCRIPTIONAL REGULATOR SPO8 (S.cerevisiae) BF412656 methyltransferase-like 3 Mettl3 361035 NM_001024794 0001510 // RNA methylation // inferred from electronic annotation /// 0001510 // RNA methylation // not recorded /// 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016422 // mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity // inferred from electronic annotation /// 0016422 // mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation 1376987_at AW523375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523375 /DB_XREF=gi:7165760 /DB_XREF=UI-R-BO0-aif-e-07-0-UI.s1 /CLONE=UI-R-BO0-aif-e-07-0-UI /FEA=EST /CNT=5 /TID=Rn.33988.1 /TIER=ConsEnd /STK=4 /UG=Rn.33988 /UG_TITLE=ESTs AW523375 leucine rich repeat containing 49 Lrrc49 300763 NM_001134469 0005515 // protein binding // inferred from electronic annotation 1376988_at AW527989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527989 /DB_XREF=gi:7170403 /DB_XREF=UI-R-BT1-akg-d-10-0-UI.s1 /CLONE=UI-R-BT1-akg-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.50143.1 /TIER=ConsEnd /STK=4 /UG=Rn.50143 /UG_TITLE=ESTs, Highly similar to T32733 AMPA glutamate receptor interacting protein GRIP - rat (R.norvegicus) AW527989 glutamate receptor interacting protein 1 Grip1 84016 NM_032069 0007399 // nervous system development // inferred from mutant phenotype /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded 1376989_at BE099568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099568 /DB_XREF=gi:8491446 /DB_XREF=UI-R-BJ1-atj-h-02-0-UI.s1 /CLONE=UI-R-BJ1-atj-h-02-0-UI /FEA=EST /CNT=5 /TID=Rn.14653.1 /TIER=ConsEnd /STK=4 /UG=Rn.14653 /UG_TITLE=ESTs BE099568 1376990_at BE118704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118704 /DB_XREF=gi:8510809 /DB_XREF=UI-R-BS1-azr-g-06-0-UI.s1 /CLONE=UI-R-BS1-azr-g-06-0-UI /FEA=EST /CNT=5 /TID=Rn.38645.1 /TIER=ConsEnd /STK=4 /UG=Rn.38645 /UG_TITLE=ESTs BE118704 1376991_at BE095620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095620 /DB_XREF=gi:8486551 /DB_XREF=UI-R-BO1-apo-b-09-0-UI.s1 /CLONE=UI-R-BO1-apo-b-09-0-UI /FEA=EST /CNT=5 /TID=Rn.25269.1 /TIER=ConsEnd /STK=4 /UG=Rn.25269 /UG_TITLE=ESTs BE095620 1376992_a_at AI058900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058900 /DB_XREF=gi:3332677 /DB_XREF=UI-R-C1-ks-b-03-0-UI.s1 /CLONE=UI-R-C1-ks-b-03-0-UI /FEA=EST /CNT=5 /TID=Rn.4112.1 /TIER=ConsEnd /STK=4 /UG=Rn.4112 /UG_TITLE=ESTs AI058900 coiled-coil domain containing 84 Ccdc84 689046 XM_001060013 1376993_at AW533490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533490 /DB_XREF=gi:7175904 /DB_XREF=UI-R-BU0-ani-e-06-0-UI.s1 /CLONE=UI-R-BU0-ani-e-06-0-UI /FEA=EST /CNT=5 /TID=Rn.48127.1 /TIER=ConsEnd /STK=4 /UG=Rn.48127 /UG_TITLE=ESTs AW533490 1376994_at BE098799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098799 /DB_XREF=gi:8490668 /DB_XREF=UI-R-BJ1-ate-a-04-0-UI.s1 /CLONE=UI-R-BJ1-ate-a-04-0-UI /FEA=EST /CNT=5 /TID=Rn.19913.1 /TIER=ConsEnd /STK=4 /UG=Rn.19913 /UG_TITLE=ESTs, Moderately similar to T08680 hypothetical protein DKFZp564P0622.1 (H.sapiens) BE098799 1376995_at AI501186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501186 /DB_XREF=gi:4399037 /DB_XREF=UI-R-C2p-rt-e-11-0-UI.s1 /CLONE=UI-R-C2p-rt-e-11-0-UI /FEA=EST /CNT=5 /TID=Rn.22155.1 /TIER=ConsEnd /STK=4 /UG=Rn.22155 /UG_TITLE=ESTs, Highly similar to FORKHEAD-RELATED TRANSCRIPTION FACTOR 5 (R.norvegicus) AI501186 forkhead box D4 Foxd4 252886 XM_001055972 /// XM_001078871 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1376996_at AI556018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556018 /DB_XREF=gi:4488381 /DB_XREF=UI-R-C2p-qz-e-10-0-UI.s1 /CLONE=UI-R-C2p-qz-e-10-0-UI /FEA=EST /CNT=5 /TID=Rn.42983.1 /TIER=ConsEnd /STK=4 /UG=Rn.42983 /UG_TITLE=ESTs AI556018 1376997_at BI277619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277619 /DB_XREF=gi:14923668 /DB_XREF=UI-R-CY0-bxt-d-07-0-UI.s1 /CLONE=UI-R-CY0-bxt-d-07-0-UI /FEA=EST /CNT=5 /TID=Rn.18388.1 /TIER=ConsEnd /STK=4 /UG=Rn.18388 /UG_TITLE=ESTs BI277619 1376998_a_at BI276006 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276006 /DB_XREF=gi:14920493 /DB_XREF=UI-R-CW0-bwn-a-06-0-UI.s1 /CLONE=UI-R-CW0-bwn-a-06-0-UI /FEA=EST /CNT=5 /TID=Rn.22890.2 /TIER=ConsEnd /STK=2 /UG=Rn.22890 /UG_TITLE=ESTs BI276006 similar to FLJ00128 protein RGD1308093 361034 XM_001075554 /// XM_341309 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1376999_at BF389721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389721 /DB_XREF=gi:11374556 /DB_XREF=UI-R-BS2-bdo-a-06-0-UI.s1 /CLONE=UI-R-BS2-bdo-a-06-0-UI /FEA=EST /CNT=5 /TID=Rn.18730.1 /TIER=ConsEnd /STK=4 /UG=Rn.18730 /UG_TITLE=ESTs BF389721 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 Tnks2 309512 NM_001107607 0000723 // telomere maintenance // not recorded /// 0006471 // protein ADP-ribosylation // not recorded /// 0035264 // multicellular organism growth // not recorded /// 0040014 // regulation of multicellular organism growth // not recorded /// 0070198 // protein localization to chromosome, telomeric region // not recorded 0000242 // pericentriolar material // not recorded /// 0005634 // nucleus // not recorded /// 0005635 // nuclear envelope // not recorded /// 0005737 // cytoplasm // not recorded /// 0005792 // microsome // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from electronic annotation /// 0003950 // NAD+ ADP-ribosyltransferase activity // not recorded 1377000_at BI297041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297041 /DB_XREF=gi:14962060 /DB_XREF=UI-R-DK0-cgk-e-11-0-UI.s1 /CLONE=UI-R-DK0-cgk-e-11-0-UI /FEA=EST /CNT=5 /TID=Rn.22855.1 /TIER=ConsEnd /STK=4 /UG=Rn.22855 /UG_TITLE=ESTs BI297041 WAS protein homolog associated with actin, golgi membranes and microtubules Whamm 293057 NM_001130728 1377001_at AI406747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406747 /DB_XREF=gi:4250251 /DB_XREF=EST235034 /CLONE=RBRDJ29 /FEA=EST /CNT=5 /TID=Rn.43240.1 /TIER=ConsEnd /STK=4 /UG=Rn.43240 /UG_TITLE=ESTs AI406747 neuronal cell adhesion molecule Nrcam 497815 NM_013150 0007155 // cell adhesion // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0019227 // neuronal action potential propagation // inferred from electronic annotation /// 0019227 // neuronal action potential propagation // not recorded /// 0045162 // clustering of voltage-gated sodium channels // not recorded /// 0045162 // clustering of voltage-gated sodium channels // inferred from sequence or structural similarity 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030506 // ankyrin binding // not recorded /// 0030506 // ankyrin binding // inferred from sequence or structural similarity /// 0030506 // ankyrin binding // traceable author statement 1377002_at AA946209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946209 /DB_XREF=gi:3106125 /DB_XREF=EST201708 /CLONE=RLUBC39 /FEA=EST /CNT=5 /TID=Rn.8010.1 /TIER=ConsEnd /STK=4 /UG=Rn.8010 /UG_TITLE=ESTs AA946209 1377003_at AW528437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528437 /DB_XREF=gi:7170851 /DB_XREF=UI-R-BO1-ajl-d-06-0-UI.s1 /CLONE=UI-R-BO1-ajl-d-06-0-UI /FEA=EST /CNT=5 /TID=Rn.46264.1 /TIER=ConsEnd /STK=4 /UG=Rn.46264 /UG_TITLE=ESTs AW528437 1377004_at AA800184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800184 /DB_XREF=gi:4131474 /DB_XREF=EST189681 /CLONE=RHEAM20 /FEA=EST /CNT=5 /TID=Rn.6294.1 /TIER=ConsEnd /STK=4 /UG=Rn.6294 /UG_TITLE=ESTs AA800184 1377005_at BM390962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390962 /DB_XREF=gi:18191015 /DB_XREF=UI-R-CN1-cjm-c-17-0-UI.s1 /CLONE=UI-R-CN1-cjm-c-17-0-UI /FEA=EST /CNT=5 /TID=Rn.38716.1 /TIER=ConsEnd /STK=4 /UG=Rn.38716 /UG_TITLE=ESTs BM390962 Cullin 4B Cul4b 302502 NM_001106951 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // not recorded /// 0045750 // positive regulation of S phase of mitotic cell cycle // not recorded 0031461 // cullin-RING ubiquitin ligase complex // inferred from electronic annotation /// 0031465 // Cul4B-RING ubiquitin ligase complex // not recorded 0005515 // protein binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation 1377006_at AA875047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875047 /DB_XREF=gi:4230928 /DB_XREF=UI-R-E0-cb-d-01-0-UI.s1 /CLONE=UI-R-E0-cb-d-01-0-UI /FEA=EST /CNT=5 /TID=Rn.3215.1 /TIER=ConsEnd /STK=4 /UG=Rn.3215 /UG_TITLE=ESTs, Highly similar to TCPZ MOUSE T-COMPLEX PROTEIN 1, ZETA SUBUNIT (M.musculus) AA875047 Chaperonin containing Tcp1, subunit 6A (zeta 1) Cct6a 288620 NM_001033684 0006457 // protein folding // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005832 // chaperonin-containing T-complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1377007_at AI409696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409696 /DB_XREF=gi:4253200 /DB_XREF=EST237988 /CLONE=RKIDX60 /FEA=EST /CNT=5 /TID=Rn.43443.1 /TIER=ConsEnd /STK=4 /UG=Rn.43443 /UG_TITLE=ESTs AI409696 1377008_at BI296868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296868 /DB_XREF=gi:14961722 /DB_XREF=UI-R-DK0-cgg-e-05-0-UI.s1 /CLONE=UI-R-DK0-cgg-e-05-0-UI /FEA=EST /CNT=5 /TID=Rn.47988.1 /TIER=ConsEnd /STK=4 /UG=Rn.47988 /UG_TITLE=ESTs, Weakly similar to P518_HUMAN PROTEIN PRO0518 (H.sapiens) BI296868 Similar to GTL2, imprinted maternally expressed untranslated RGD1566401 500717 XR_008690 /// XR_086281 1377009_at BI274233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274233 /DB_XREF=gi:14884964 /DB_XREF=UI-R-CW0-bwg-e-10-0-UI.s1 /CLONE=UI-R-CW0-bwg-e-10-0-UI /FEA=EST /CNT=5 /TID=Rn.64245.1 /TIER=ConsEnd /STK=4 /UG=Rn.64245 /UG_TITLE=ESTs BI274233 1377010_at BI274499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274499 /DB_XREF=gi:14885466 /DB_XREF=UI-R-CW0-bwj-e-12-0-UI.s1 /CLONE=UI-R-CW0-bwj-e-12-0-UI /FEA=EST /CNT=5 /TID=Rn.20937.1 /TIER=ConsEnd /STK=4 /UG=Rn.20937 /UG_TITLE=ESTs, Moderately similar to T46402 hypothetical protein DKFZp434H2121.1 (H.sapiens) BI274499 similar to 2610317D23Rik protein RGD1565411 363000 NM_001134583 0005515 // protein binding // inferred from electronic annotation 1377011_at BF415061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415061 /DB_XREF=gi:11403050 /DB_XREF=UI-R-BJ2-bou-b-11-0-UI.s1 /CLONE=UI-R-BJ2-bou-b-11-0-UI /FEA=EST /CNT=5 /TID=Rn.45479.1 /TIER=ConsEnd /STK=4 /UG=Rn.45479 /UG_TITLE=ESTs BF415061 furry homolog (Drosophila) Fry 304244 NM_001170398 1377012_at AI012630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012630 /DB_XREF=gi:3226462 /DB_XREF=EST207081 /CLONE=RPLAZ73 /FEA=EST /CNT=5 /TID=Rn.7758.1 /TIER=ConsEnd /STK=4 /UG=Rn.7758 /UG_TITLE=ESTs AI012630 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 Smarcad1 312398 NM_001107864 0000018 // regulation of DNA recombination // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1377013_at AI639108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639108 /DB_XREF=gi:4700142 /DB_XREF=rx04144s /CLONE=rx04144 /FEA=EST /CNT=5 /TID=Rn.43686.1 /TIER=ConsEnd /STK=4 /UG=Rn.43686 /UG_TITLE=ESTs AI639108 1377014_at BG375383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375383 /DB_XREF=gi:13299855 /DB_XREF=UI-R-CV1-bsz-g-03-0-UI.s1 /CLONE=UI-R-CV1-bsz-g-03-0-UI /FEA=EST /CNT=5 /TID=Rn.19745.1 /TIER=ConsEnd /STK=4 /UG=Rn.19745 /UG_TITLE=ESTs BG375383 similar to hypothetical protein MGC42105 RGD1308116 310376 XM_001076547 /// XM_227081 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1377015_at BF395080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395080 /DB_XREF=gi:11380041 /DB_XREF=UI-R-CM0-bji-e-05-0-UI.s1 /CLONE=UI-R-CM0-bji-e-05-0-UI /FEA=EST /CNT=5 /TID=Rn.11929.1 /TIER=ConsEnd /STK=4 /UG=Rn.11929 /UG_TITLE=ESTs BF395080 1377016_at BE106888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106888 /DB_XREF=gi:8498990 /DB_XREF=UI-R-BT1-asu-d-03-0-UI.s1 /CLONE=UI-R-BT1-asu-d-03-0-UI /FEA=EST /CNT=5 /TID=Rn.19198.1 /TIER=ConsEnd /STK=4 /UG=Rn.19198 /UG_TITLE=ESTs, Weakly similar to EGRT epidermal growth factor precursor - rat (R.norvegicus) BE106888 cysteine-rich with EGF-like domains 2 Creld2 362978 NM_001037208 0005576 // extracellular region // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1377017_at BE110143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110143 /DB_XREF=gi:8502248 /DB_XREF=UI-R-BJ1-avf-e-12-0-UI.s1 /CLONE=UI-R-BJ1-avf-e-12-0-UI /FEA=EST /CNT=5 /TID=Rn.48903.1 /TIER=ConsEnd /STK=4 /UG=Rn.48903 /UG_TITLE=ESTs BE110143 1377018_at BF284124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284124 /DB_XREF=gi:11215194 /DB_XREF=EST448715 /CLONE=RGIEL28 /FEA=EST /CNT=5 /TID=Rn.33642.1 /TIER=ConsEnd /STK=4 /UG=Rn.33642 /UG_TITLE=ESTs, Weakly similar to VITAMIN-K DEPENDENT PROTEIN C PRECURSOR (R.norvegicus) BF284124 peptidase domain containing associated with muscle regeneration 1 Pamr1 311252 NM_001107755 0006508 // proteolysis // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation 1377019_at BF410042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410042 /DB_XREF=gi:11398017 /DB_XREF=UI-R-CA0-bjs-h-01-0-UI.s1 /CLONE=UI-R-CA0-bjs-h-01-0-UI /FEA=EST /CNT=5 /TID=Rn.31227.1 /TIER=ConsEnd /STK=4 /UG=Rn.31227 /UG_TITLE=ESTs BF410042 1377020_at BF416408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416408 /DB_XREF=gi:11404397 /DB_XREF=UI-R-CA0-bks-c-04-0-UI.s1 /CLONE=UI-R-CA0-bks-c-04-0-UI /FEA=EST /CNT=5 /TID=Rn.21911.1 /TIER=ConsEnd /STK=4 /UG=Rn.21911 /UG_TITLE=ESTs BF416408 ATPase, H+ transporting, lysosomal V0 subunit A2 Atp6v0a2 116455 NM_053775 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation 0001669 // acrosomal vesicle // not recorded /// 0033177 // proton-transporting two-sector ATPase complex, proton-transporting domain // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation 1377021_at BI303908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303908 /DB_XREF=gi:14980188 /DB_XREF=UI-R-DR0-cjb-j-04-0-UI.s1 /CLONE=UI-R-DR0-cjb-j-04-0-UI /FEA=EST /CNT=5 /TID=Rn.48288.1 /TIER=ConsEnd /STK=4 /UG=Rn.48288 /UG_TITLE=ESTs BI303908 tRNA methyltransferase 6 homolog (S. cerevisiae) Trmt6 311441 NM_001107779 0006413 // translational initiation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred from electronic annotation 1377022_at BF395328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395328 /DB_XREF=gi:11380293 /DB_XREF=UI-R-CM0-bjq-b-10-0-UI.s1 /CLONE=UI-R-CM0-bjq-b-10-0-UI /FEA=EST /CNT=5 /TID=Rn.12886.1 /TIER=ConsEnd /STK=4 /UG=Rn.12886 /UG_TITLE=ESTs BF395328 abhydrolase domain containing 10 Abhd10 303953 NM_001123352 0006508 // proteolysis // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1377023_at AI408580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408580 /DB_XREF=gi:4252084 /DB_XREF=EST236870 /CLONE=ROVEQ72 /FEA=EST /CNT=5 /TID=Rn.19118.1 /TIER=ConsEnd /STK=4 /UG=Rn.19118 /UG_TITLE=ESTs AI408580 dual specificity phosphatase 2 Dusp2 311406 NM_001012089 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // not recorded /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0051019 // mitogen-activated protein kinase binding // inferred from electronic annotation /// 0051019 // mitogen-activated protein kinase binding // not recorded 1377024_at BM388334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388334 /DB_XREF=gi:18188387 /DB_XREF=UI-R-DM1-cjz-l-20-0-UI.s1 /CLONE=UI-R-DM1-cjz-l-20-0-UI /FEA=EST /CNT=5 /TID=Rn.20240.1 /TIER=ConsEnd /STK=4 /UG=Rn.20240 /UG_TITLE=ESTs, Weakly similar to PANCREATIC SECRETORY TRYPSIN INHIBITOR II PRECURSOR (R.norvegicus) BM388334 serine peptidase inhibitor, Kazal type 5 Spink5 361319 NM_001170606 /// XM_001056195 /// XM_002727265 /// XM_002728544 /// XM_341607 0009913 // epidermal cell differentiation // not recorded /// 0010466 // negative regulation of peptidase activity // not recorded /// 0030155 // regulation of cell adhesion // not recorded /// 0045861 // negative regulation of proteolysis // not recorded 0005576 // extracellular region // not recorded /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005829 // cytosol // not recorded /// 0005938 // cell cortex // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // not recorded /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // not recorded 1377025_at BF563503 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563503 /DB_XREF=gi:11673233 /DB_XREF=UI-R-C4-ale-g-02-0-UI.r1 /CLONE=UI-R-C4-ale-g-02-0-UI /FEA=EST /CNT=5 /TID=Rn.47400.1 /TIER=ConsEnd /STK=4 /UG=Rn.47400 /UG_TITLE=ESTs, Weakly similar to kinesin family member 3C (Rattus norvegicus) (R.norvegicus) BF563503 kinesin family member 3a Kif3a 84392 NM_053377 0001701 // in utero embryonic development // not recorded /// 0001822 // kidney development // not recorded /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // not recorded /// 0007368 // determination of left/right symmetry // not recorded /// 0007507 // heart development // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0021904 // dorsal/ventral neural tube patterning // not recorded /// 0042384 // cilium assembly // not recorded /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from direct assay /// 0060271 // cilium morphogenesis // not recorded 0005874 // microtubule // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0035085 // cilium axoneme // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1377026_a_at BI299511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299511 /DB_XREF=gi:14975791 /DB_XREF=UI-R-CV2-cgu-a-11-0-UI.s1 /CLONE=UI-R-CV2-cgu-a-11-0-UI /FEA=EST /CNT=5 /TID=Rn.8174.2 /TIER=ConsEnd /STK=4 /UG=Rn.8174 /UG_TITLE=ESTs BI299511 1377027_at BI299511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299511 /DB_XREF=gi:14975791 /DB_XREF=UI-R-CV2-cgu-a-11-0-UI.s1 /CLONE=UI-R-CV2-cgu-a-11-0-UI /FEA=EST /CNT=5 /TID=Rn.8174.2 /TIER=ConsEnd /STK=4 /UG=Rn.8174 /UG_TITLE=ESTs BI299511 1377028_at BG373675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373675 /DB_XREF=gi:13270212 /DB_XREF=UI-R-CV1-bsg-f-02-0-UI.s1 /CLONE=UI-R-CV1-bsg-f-02-0-UI /FEA=EST /CNT=5 /TID=Rn.27597.1 /TIER=ConsEnd /STK=4 /UG=Rn.27597 /UG_TITLE=ESTs BG373675 1377029_at AI235414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235414 /DB_XREF=gi:4136089 /DB_XREF=EST231976 /CLONE=ROVCR53 /FEA=EST /CNT=5 /TID=Rn.18761.1 /TIER=ConsEnd /STK=4 /UG=Rn.18761 /UG_TITLE=ESTs AI235414 1377030_at BF390550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390550 /DB_XREF=gi:11375396 /DB_XREF=UI-R-CA1-bcc-d-05-0-UI.s1 /CLONE=UI-R-CA1-bcc-d-05-0-UI /FEA=EST /CNT=5 /TID=Rn.62234.1 /TIER=ConsEnd /STK=4 /UG=Rn.62234 /UG_TITLE=ESTs BF390550 1377031_at BG372809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372809 /DB_XREF=gi:13269346 /DB_XREF=UI-R-CV1-brt-h-11-0-UI.s1 /CLONE=UI-R-CV1-brt-h-11-0-UI /FEA=EST /CNT=5 /TID=Rn.66959.1 /TIER=ConsEnd /STK=4 /UG=Rn.66959 /UG_TITLE=ESTs BG372809 similar to UTP11-like, U3 small nucleolar ribonucleoprotein LOC366225 366225 XR_006682 /// XR_007758 1377032_at AI103506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103506 /DB_XREF=gi:3708042 /DB_XREF=EST212795 /CLONE=REMCC82 /FEA=EST /CNT=5 /TID=Rn.21336.1 /TIER=ConsEnd /STK=4 /UG=Rn.21336 /UG_TITLE=ESTs AI103506 1377033_at BG377997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377997 /DB_XREF=gi:13302469 /DB_XREF=UI-R-CU0-bvh-f-06-0-UI.s1 /CLONE=UI-R-CU0-bvh-f-06-0-UI /FEA=EST /CNT=5 /TID=Rn.15774.1 /TIER=ConsEnd /STK=4 /UG=Rn.15774 /UG_TITLE=ESTs BG377997 serine (or cysteine) peptidase inhibitor, clade F, member 2 Serpinf2 287527 NM_001011892 0010033 // response to organic substance // inferred from expression pattern /// 0051918 // negative regulation of fibrinolysis // inferred from mutant phenotype 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0031093 // platelet alpha granule lumen // not recorded 0002020 // protease binding // inferred from electronic annotation /// 0002020 // protease binding // not recorded /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1377034_at BF411331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411331 /DB_XREF=gi:11399313 /DB_XREF=UI-R-CN0-bmj-b-09-0-UI.s1 /CLONE=UI-R-CN0-bmj-b-09-0-UI /FEA=EST /CNT=5 /TID=Rn.38571.1 /TIER=ConsEnd /STK=4 /UG=Rn.38571 /UG_TITLE=ESTs, Weakly similar to plasminogen activator inhibitor 2 type A (Rattus norvegicus) (R.norvegicus) BF411331 serine (or cysteine) proteinase inhibitor, clade B, member 1a Serpinb1a 291091 NM_001031642 0042176 // regulation of protein catabolic process // inferred from electronic annotation /// 0042176 // regulation of protein catabolic process // not recorded 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1377035_at BF400026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400026 /DB_XREF=gi:11385001 /DB_XREF=UI-R-CA1-bia-d-03-0-UI.s1 /CLONE=UI-R-CA1-bia-d-03-0-UI /FEA=EST /CNT=5 /TID=Rn.63770.1 /TIER=ConsEnd /STK=4 /UG=Rn.63770 /UG_TITLE=ESTs, Weakly similar to VAMP-associated protein B (H.sapiens) BF400026 motile sperm domain containing 4 Mospd4 317161 NM_001108241 0005198 // structural molecule activity // inferred from electronic annotation 1377036_at BE102350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102350 /DB_XREF=gi:8494449 /DB_XREF=UI-R-BT1-aql-e-07-0-UI.s1 /CLONE=UI-R-BT1-aql-e-07-0-UI /FEA=EST /CNT=5 /TID=Rn.6745.1 /TIER=ConsEnd /STK=4 /UG=Rn.6745 /UG_TITLE=ESTs BE102350 1377037_at AI411493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411493 /DB_XREF=gi:4254997 /DB_XREF=EST239787 /CLONE=RKIEL57 /FEA=EST /CNT=5 /TID=Rn.16025.1 /TIER=ConsEnd /STK=4 /UG=Rn.16025 /UG_TITLE=ESTs, Weakly similar to MTE1 RAT ACYL COENZYME A THIOESTER HYDROLASE, MITOCHONDRIAL PRECURSOR (R.norvegicus) AI411493 acyl-CoA thioesterase 4 Acot4 681337 NM_001109440 0000038 // very long-chain fatty acid metabolic process // not recorded /// 0001676 // long-chain fatty acid metabolic process // not recorded /// 0006104 // succinyl-CoA metabolic process // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006637 // acyl-CoA metabolic process // not recorded /// 0006637 // acyl-CoA metabolic process // inferred from electronic annotation /// 0032788 // saturated monocarboxylic acid metabolic process // not recorded /// 0032789 // unsaturated monocarboxylic acid metabolic process // not recorded /// 0043437 // butanoic acid metabolic process // not recorded /// 0043648 // dicarboxylic acid metabolic process // not recorded /// 0046459 // short-chain fatty acid metabolic process // not recorded 0005777 // peroxisome // not recorded 0016290 // palmitoyl-CoA hydrolase activity // inferred from electronic annotation /// 0016291 // acyl-CoA thioesterase activity // not recorded /// 0016790 // thiolester hydrolase activity // inferred from electronic annotation 1377038_at BF403923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403923 /DB_XREF=gi:11391898 /DB_XREF=UI-R-CA1-bjd-h-13-0-UI.s1 /CLONE=UI-R-CA1-bjd-h-13-0-UI /FEA=EST /CNT=5 /TID=Rn.25358.1 /TIER=ConsEnd /STK=4 /UG=Rn.25358 /UG_TITLE=ESTs BF403923 T-box 19 Tbx19 304935 NM_001107193 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0021983 // pituitary gland development // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded 1377039_at BF401480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401480 /DB_XREF=gi:11389455 /DB_XREF=UI-R-CA0-bgl-a-12-0-UI.s1 /CLONE=UI-R-CA0-bgl-a-12-0-UI /FEA=EST /CNT=5 /TID=Rn.19277.1 /TIER=ConsEnd /STK=4 /UG=Rn.19277 /UG_TITLE=ESTs BF401480 1377040_a_at AI172225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172225 /DB_XREF=gi:3712265 /DB_XREF=EST218224 /CLONE=RMUBW52 /FEA=EST /CNT=5 /TID=Rn.17600.1 /TIER=ConsEnd /STK=4 /UG=Rn.17600 /UG_TITLE=ESTs AI172225 1377041_at AA891664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891664 /DB_XREF=gi:3018543 /DB_XREF=EST195467 /CLONE=RKIAF27 /FEA=EST /CNT=5 /TID=Rn.22700.1 /TIER=ConsEnd /STK=4 /UG=Rn.22700 /UG_TITLE=ESTs AA891664 MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase Mfng 315119 NM_199110 0007389 // pattern specification process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0033829 // O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity // inferred from electronic annotation 1377042_at BI288196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288196 /DB_XREF=gi:14944543 /DB_XREF=UI-R-DK0-ccy-a-05-0-UI.s1 /CLONE=UI-R-DK0-ccy-a-05-0-UI /FEA=EST /CNT=5 /TID=Rn.31865.1 /TIER=ConsEnd /STK=4 /UG=Rn.31865 /UG_TITLE=ESTs BI288196 polycomb group ring finger 5 Pcgf5 681178 NM_001129882 0005813 // centrosome // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377043_at BF388434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388434 /DB_XREF=gi:11373258 /DB_XREF=UI-R-BS2-bdc-e-01-0-UI.s1 /CLONE=UI-R-BS2-bdc-e-01-0-UI /FEA=EST /CNT=5 /TID=Rn.11743.1 /TIER=ConsEnd /STK=4 /UG=Rn.11743 /UG_TITLE=ESTs BF388434 1377044_at AW143175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143175 /DB_XREF=gi:6163074 /DB_XREF=EST293471 /CLONE=RGIBE95 /FEA=EST /CNT=5 /TID=Rn.27870.1 /TIER=ConsEnd /STK=4 /UG=Rn.27870 /UG_TITLE=ESTs AW143175 1377045_at BG372832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372832 /DB_XREF=gi:13269369 /DB_XREF=UI-R-CV1-bsa-c-12-0-UI.s1 /CLONE=UI-R-CV1-bsa-c-12-0-UI /FEA=EST /CNT=5 /TID=Rn.35080.1 /TIER=ConsEnd /STK=4 /UG=Rn.35080 /UG_TITLE=ESTs BG372832 1377046_at AW524407 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524407 /DB_XREF=gi:7166792 /DB_XREF=UI-R-BO0-ahx-a-01-0-UI.s1 /CLONE=UI-R-BO0-ahx-a-01-0-UI /FEA=EST /CNT=5 /TID=Rn.45844.1 /TIER=ConsEnd /STK=4 /UG=Rn.45844 /UG_TITLE=ESTs AW524407 ankyrin repeat domain 6 Ankrd6 500430 NM_001134969 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1377047_at AI710879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI710879 /DB_XREF=gi:5000655 /DB_XREF=UI-R-AE1-zh-d-03-0-UI.s1 /CLONE=UI-R-AE1-zh-d-03-0-UI /FEA=EST /CNT=5 /TID=Rn.14755.1 /TIER=ConsEnd /STK=4 /UG=Rn.14755 /UG_TITLE=ESTs AI710879 1377048_at H31813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31813 /DB_XREF=gi:977230 /DB_XREF=EST106240 /CLONE=RPCAY63 /FEA=EST /CNT=5 /TID=Rn.14595.1 /TIER=ConsEnd /STK=4 /UG=Rn.14595 /UG_TITLE=ESTs, Moderately similar to T14781 hypothetical protein DKFZp586B1621.1 (H.sapiens) H31813 dihydroxyacetone kinase 2 homolog (S. cerevisiae) Dak 361730 NM_001039031 0006071 // glycerol metabolic process // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004371 // glycerone kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0034012 // FAD-AMP lyase (cyclizing) activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377049_at BE107890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107890 /DB_XREF=gi:8499995 /DB_XREF=UI-R-CA0-awy-a-05-0-UI.s1 /CLONE=UI-R-CA0-awy-a-05-0-UI /FEA=EST /CNT=5 /TID=Rn.35594.1 /TIER=ConsEnd /STK=4 /UG=Rn.35594 /UG_TITLE=ESTs BE107890 patatin-like phospholipase domain containing 7 Pnpla7 246246 NM_144738 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0004091 // carboxylesterase activity // inferred from mutant phenotype /// 0016787 // hydrolase activity // inferred from electronic annotation 1377050_at BF395777 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395777 /DB_XREF=gi:11380748 /DB_XREF=UI-R-BT1-bkc-b-10-0-UI.s1 /CLONE=UI-R-BT1-bkc-b-10-0-UI /FEA=EST /CNT=5 /TID=Rn.12240.1 /TIER=ConsEnd /STK=4 /UG=Rn.12240 /UG_TITLE=ESTs BF395777 1377051_at AA849966 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849966 /DB_XREF=gi:2937506 /DB_XREF=EST192733 /CLONE=RMUAL18 /FEA=EST /CNT=5 /TID=Rn.22842.1 /TIER=ConsEnd /STK=4 /UG=Rn.22842 /UG_TITLE=ESTs AA849966 Mpv17 transgene, kidney disease mutant-like (predicted)-like LOC100366119 100366119 XM_002724478 0016021 // integral to membrane // inferred from electronic annotation 1377052_at AW533469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533469 /DB_XREF=gi:7175883 /DB_XREF=UI-R-BU0-ani-c-06-0-UI.s1 /CLONE=UI-R-BU0-ani-c-06-0-UI /FEA=EST /CNT=5 /TID=Rn.25232.1 /TIER=ConsEnd /STK=4 /UG=Rn.25232 /UG_TITLE=ESTs AW533469 1377053_at BE117757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117757 /DB_XREF=gi:8509862 /DB_XREF=UI-R-BS1-azf-f-03-0-UI.s1 /CLONE=UI-R-BS1-azf-f-03-0-UI /FEA=EST /CNT=5 /TID=Rn.39247.1 /TIER=ConsEnd /STK=4 /UG=Rn.39247 /UG_TITLE=ESTs BE117757 protein kinase-like protein SgK196 Sgk196 306549 NM_001024883 0006468 // protein phosphorylation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1377054_at BF418563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418563 /DB_XREF=gi:11406552 /DB_XREF=UI-R-BJ2-bqh-d-05-0-UI.s1 /CLONE=UI-R-BJ2-bqh-d-05-0-UI /FEA=EST /CNT=5 /TID=Rn.41884.1 /TIER=ConsEnd /STK=4 /UG=Rn.41884 /UG_TITLE=ESTs BF418563 1377055_at BF394089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394089 /DB_XREF=gi:11378958 /DB_XREF=UI-R-CA0-bgz-b-05-0-UI.s1 /CLONE=UI-R-CA0-bgz-b-05-0-UI /FEA=EST /CNT=5 /TID=Rn.49835.1 /TIER=ConsEnd /STK=4 /UG=Rn.49835 /UG_TITLE=ESTs BF394089 hypothetical protein LOC100362814 LOC100362814 100362814 XM_002729200 1377056_at BF393907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393907 /DB_XREF=gi:11378770 /DB_XREF=UI-R-CA0-bgw-e-02-0-UI.s1 /CLONE=UI-R-CA0-bgw-e-02-0-UI /FEA=EST /CNT=5 /TID=Rn.46805.1 /TIER=ConsEnd /STK=4 /UG=Rn.46805 /UG_TITLE=ESTs BF393907 1377057_at BF409786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409786 /DB_XREF=gi:11397761 /DB_XREF=UI-R-CA1-bls-g-07-0-UI.s1 /CLONE=UI-R-CA1-bls-g-07-0-UI /FEA=EST /CNT=5 /TID=Rn.61484.1 /TIER=ConsEnd /STK=4 /UG=Rn.61484 /UG_TITLE=ESTs BF409786 1377058_at BI291872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291872 /DB_XREF=gi:14951829 /DB_XREF=UI-R-DN0-ciu-c-17-0-UI.s1 /CLONE=UI-R-DN0-ciu-c-17-0-UI /FEA=EST /CNT=5 /TID=Rn.41938.1 /TIER=ConsEnd /STK=4 /UG=Rn.41938 /UG_TITLE=ESTs BI291872 Solute carrier family 37 (glycerol-3-phosphate transporter), member 2 Slc37a2 500973 NM_001191994 /// XM_001061125 /// XM_576383 0055085 // transmembrane transport // inferred from electronic annotation 1377059_at AW533194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533194 /DB_XREF=gi:7175608 /DB_XREF=UI-R-BU0-ane-h-08-0-UI.s1 /CLONE=UI-R-BU0-ane-h-08-0-UI /FEA=EST /CNT=5 /TID=Rn.29847.1 /TIER=ConsEnd /STK=4 /UG=Rn.29847 /UG_TITLE=ESTs AW533194 1377060_at AI410674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410674 /DB_XREF=gi:4254178 /DB_XREF=EST238967 /CLONE=RHECV26 /FEA=EST /CNT=5 /TID=Rn.43002.1 /TIER=ConsEnd /STK=4 /UG=Rn.43002 /UG_TITLE=ESTs, Weakly similar to YLP5_CAEEL HYPOTHETICAL 66.5 KD PROTEIN F02A9.5 IN CHROMOSOME III (C.elegans) AI410674 methylcrotonoyl-Coenzyme A carboxylase 2 (beta) Mccc2 361884 NM_001012177 0015936 // coenzyme A metabolic process // inferred from direct assay 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004485 // methylcrotonoyl-CoA carboxylase activity // inferred from direct assay /// 0004485 // methylcrotonoyl-CoA carboxylase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1377061_at BE097238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097238 /DB_XREF=gi:8488169 /DB_XREF=UI-R-BO1-apu-h-11-0-UI.s1 /CLONE=UI-R-BO1-apu-h-11-0-UI /FEA=EST /CNT=5 /TID=Rn.49130.1 /TIER=ConsEnd /STK=4 /UG=Rn.49130 /UG_TITLE=ESTs BE097238 Rho GTPase-activating protein Rics 315530 XM_001056872 /// XM_236020 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded 1377062_at BE100468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100468 /DB_XREF=gi:8492361 /DB_XREF=UI-R-BJ1-atv-g-11-0-UI.s1 /CLONE=UI-R-BJ1-atv-g-11-0-UI /FEA=EST /CNT=5 /TID=Rn.41835.1 /TIER=ConsEnd /STK=4 /UG=Rn.41835 /UG_TITLE=ESTs BE100468 centrosomal protein 250kDa Cep250 311573 XM_002726274 /// XM_230784 0000278 // mitotic cell cycle // not recorded /// 0008104 // protein localization // not recorded /// 0010457 // centriole-centriole cohesion // not recorded /// 0030997 // regulation of centriole-centriole cohesion // not recorded 0005813 // centrosome // not recorded /// 0005814 // centriole // not recorded /// 0005829 // cytosol // not recorded /// 0043234 // protein complex // not recorded 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0019901 // protein kinase binding // not recorded 1377063_at BE108754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108754 /DB_XREF=gi:8500859 /DB_XREF=UI-R-BS1-ayy-a-12-0-UI.s1 /CLONE=UI-R-BS1-ayy-a-12-0-UI /FEA=EST /CNT=5 /TID=Rn.12576.1 /TIER=ConsEnd /STK=4 /UG=Rn.12576 /UG_TITLE=ESTs BE108754 1377064_at AI602811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602811 /DB_XREF=gi:4611972 /DB_XREF=UI-R-AE0-xm-a-02-0-UI.s1 /CLONE=UI-R-AE0-xm-a-02-0-UI /FEA=EST /CNT=5 /TID=Rn.13146.1 /TIER=ConsEnd /STK=4 /UG=Rn.13146 /UG_TITLE=ESTs AI602811 dual specificity phosphatase 6 Dusp6 116663 NM_053883 0000188 // inactivation of MAPK activity // inferred from electronic annotation /// 0000188 // inactivation of MAPK activity // not recorded /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // not recorded /// 0006470 // protein dephosphorylation // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from expression pattern /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0051409 // response to nitrosative stress // inferred from electronic annotation /// 0051409 // response to nitrosative stress // not recorded /// 0060420 // regulation of heart growth // inferred from electronic annotation /// 0060420 // regulation of heart growth // not recorded /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0070373 // negative regulation of ERK1 and ERK2 cascade // not recorded /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070848 // response to growth factor stimulus // inferred from expression pattern 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // not recorded /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from direct assay /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // not recorded 1377065_at BG380274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380274 /DB_XREF=gi:13304746 /DB_XREF=UI-R-CS0-btv-b-05-0-UI.s1 /CLONE=UI-R-CS0-btv-b-05-0-UI /FEA=EST /CNT=5 /TID=Rn.41404.1 /TIER=ConsEnd /STK=4 /UG=Rn.41404 /UG_TITLE=ESTs BG380274 similar to chromosome 10 open reading frame 71 RGD1564899 498579 XM_001060995 /// XM_573855 1377066_at BF387267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387267 /DB_XREF=gi:11372091 /DB_XREF=UI-R-CA1-bbl-e-04-0-UI.s1 /CLONE=UI-R-CA1-bbl-e-04-0-UI /FEA=EST /CNT=5 /TID=Rn.63900.1 /TIER=ConsEnd /STK=4 /UG=Rn.63900 /UG_TITLE=ESTs BF387267 1377067_at AI137309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137309 /DB_XREF=gi:3638086 /DB_XREF=UI-R-C2p-ol-f-02-0-UI.s1 /CLONE=UI-R-C2p-ol-f-02-0-UI /FEA=EST /CNT=5 /TID=Rn.27386.1 /TIER=ConsEnd /STK=4 /UG=Rn.27386 /UG_TITLE=ESTs AI137309 family with sequence similarity 178, member B Fam178b 501125 NM_001122658 1377068_at AI011182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011182 /DB_XREF=gi:3225014 /DB_XREF=EST205633 /CLONE=ROVAQ51 /FEA=EST /CNT=5 /TID=Rn.25509.1 /TIER=ConsEnd /STK=4 /UG=Rn.25509 /UG_TITLE=ESTs, Highly similar to TST1 MOUSE PROTEIN-TYROSINE SULFOTRANSFERASE 1 (M.musculus) AI011182 Tyrosylprotein sulfotransferase 1 Tpst1 288617 NM_001011903 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0008476 // protein-tyrosine sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1377069_at BG379055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379055 /DB_XREF=gi:13303527 /DB_XREF=UI-R-BT1-bnh-c-01-0-UI.s1 /CLONE=UI-R-BT1-bnh-c-01-0-UI /FEA=EST /CNT=5 /TID=Rn.6669.1 /TIER=ConsEnd /STK=4 /UG=Rn.6669 /UG_TITLE=ESTs BG379055 1377070_at BE098910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098910 /DB_XREF=gi:8490783 /DB_XREF=UI-R-BJ1-atg-c-02-0-UI.s1 /CLONE=UI-R-BJ1-atg-c-02-0-UI /FEA=EST /CNT=5 /TID=Rn.34123.1 /TIER=ConsEnd /STK=4 /UG=Rn.34123 /UG_TITLE=ESTs, Highly similar to S145_HUMAN SPLICEOSOME ASSOCIATED PROTEIN 145 (H.sapiens) BE098910 splicing factor 3b, subunit 2 Sf3b2 293671 NM_001106326 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1377071_at BG375652 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375652 /DB_XREF=gi:13300124 /DB_XREF=UI-R-CS0-btd-g-10-0-UI.s1 /CLONE=UI-R-CS0-btd-g-10-0-UI /FEA=EST /CNT=5 /TID=Rn.45961.1 /TIER=ConsEnd /STK=4 /UG=Rn.45961 /UG_TITLE=ESTs BG375652 1377072_at BE115516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115516 /DB_XREF=gi:8507621 /DB_XREF=UI-R-BS1-axw-g-07-0-UI.s1 /CLONE=UI-R-BS1-axw-g-07-0-UI /FEA=EST /CNT=5 /TID=Rn.48980.1 /TIER=ConsEnd /STK=4 /UG=Rn.48980 /UG_TITLE=ESTs BE115516 rCG31687-like LOC100361376 100361376 XM_002729875 /// XM_002729876 1377073_at BE109756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109756 /DB_XREF=gi:8501861 /DB_XREF=UI-R-BJ1-aup-g-10-0-UI.s1 /CLONE=UI-R-BJ1-aup-g-10-0-UI /FEA=EST /CNT=5 /TID=Rn.41036.1 /TIER=ConsEnd /STK=4 /UG=Rn.41036 /UG_TITLE=ESTs BE109756 1377074_at AW251840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251840 /DB_XREF=gi:6595431 /DB_XREF=UI-R-BJ0-adl-e-10-0-UI.s1 /CLONE=UI-R-BJ0-adl-e-10-0-UI /FEA=EST /CNT=5 /TID=Rn.44742.1 /TIER=ConsEnd /STK=4 /UG=Rn.44742 /UG_TITLE=ESTs AW251840 1377075_at AW533613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533613 /DB_XREF=gi:7176027 /DB_XREF=UI-R-BU0-anj-a-06-0-UI.s1 /CLONE=UI-R-BU0-anj-a-06-0-UI /FEA=EST /CNT=5 /TID=Rn.41000.1 /TIER=ConsEnd /STK=4 /UG=Rn.41000 /UG_TITLE=ESTs AW533613 1377076_at AI716131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716131 /DB_XREF=gi:5033342 /DB_XREF=UI-R-Y0-acd-h-03-0-UI.s1 /CLONE=UI-R-Y0-acd-h-03-0-UI /FEA=EST /CNT=5 /TID=Rn.24258.1 /TIER=ConsEnd /STK=4 /UG=Rn.24258 /UG_TITLE=ESTs AI716131 sialic acid acetylesterase Siae 363045 NM_001108759 0005764 // lysosome // inferred from electronic annotation 0001681 // sialate O-acetylesterase activity // inferred from electronic annotation /// 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1377077_at AW141867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141867 /DB_XREF=gi:6161726 /DB_XREF=EST291982 /CLONE=RGICN01 /FEA=EST /CNT=5 /TID=Rn.21101.1 /TIER=ConsEnd /STK=4 /UG=Rn.21101 /UG_TITLE=ESTs AW141867 plexin A3 Plxna3 309280 NM_001107581 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0021766 // hippocampus development // not recorded /// 0021860 // pyramidal neuron development // not recorded /// 0048843 // negative regulation of axon extension involved in axon guidance // not recorded /// 0050919 // negative chemotaxis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1377078_at AI175403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175403 /DB_XREF=gi:4134792 /DB_XREF=EST218946 /CLONE=RMUCN08 /FEA=EST /CNT=5 /TID=Rn.22079.1 /TIER=ConsEnd /STK=4 /UG=Rn.22079 /UG_TITLE=ESTs, Highly similar to A36492 phosphoprotein phosphatase (R.norvegicus) AI175403 Protein phosphatase 3, catalytic subunit, gamma isoform Ppp3cc 171378 NM_134367 0007420 // brain development // inferred from expression pattern /// 0008633 // activation of pro-apoptotic gene products // not recorded 0005829 // cytosol // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation 1377079_a_at BF386283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386283 /DB_XREF=gi:11371107 /DB_XREF=UI-R-CA1-bbc-g-02-0-UI.s1 /CLONE=UI-R-CA1-bbc-g-02-0-UI /FEA=EST /CNT=5 /TID=Rn.24738.1 /TIER=ConsEnd /STK=4 /UG=Rn.24738 /UG_TITLE=ESTs, Highly similar to PPOX MOUSE PROTOPORPHYRINOGEN OXIDASE (M.musculus) BF386283 protoporphyrinogen oxidase Ppox 289219 NM_001105968 0006779 // porphyrin biosynthetic process // inferred from direct assay /// 0006779 // porphyrin biosynthetic process // inferred from electronic annotation /// 0006779 // porphyrin biosynthetic process // not recorded /// 0006783 // heme biosynthetic process // inferred from direct assay /// 0006783 // heme biosynthetic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0046501 // protoporphyrinogen IX metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005758 // mitochondrial intermembrane space // not recorded /// 0031305 // integral to mitochondrial inner membrane // inferred from direct assay /// 0031966 // mitochondrial membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004729 // oxygen-dependent protoporphyrinogen oxidase activity // inferred from direct assay /// 0004729 // oxygen-dependent protoporphyrinogen oxidase activity // inferred from electronic annotation /// 0004729 // oxygen-dependent protoporphyrinogen oxidase activity // not recorded /// 0005488 // binding // inferred from electronic annotation 1377080_at AI598730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598730 /DB_XREF=gi:4607778 /DB_XREF=EST250433 /CLONE=REMED20 /FEA=EST /CNT=5 /TID=Rn.40242.1 /TIER=ConsEnd /STK=4 /UG=Rn.40242 /UG_TITLE=ESTs, Weakly similar to NGFR RAT LOW-AFFINITY NERVE GROWTH FACTOR RECEPTOR PRECURSOR (R.norvegicus) AI598730 neurotrophin receptor associated death domain Nradd 246143 NM_139259 0007165 // signal transduction // inferred from electronic annotation /// 0009790 // embryo development // inferred from expression pattern /// 0010942 // positive regulation of cell death // inferred from direct assay 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005641 // nuclear envelope lumen // inferred from electronic annotation /// 0005641 // nuclear envelope lumen // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0032589 // neuron projection membrane // inferred from direct assay /// 0044298 // cell body membrane // inferred from direct assay 0005166 // neurotrophin p75 receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation 1377081_at BE096244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096244 /DB_XREF=gi:8487175 /DB_XREF=UI-R-BU0-apc-g-01-0-UI.s1 /CLONE=UI-R-BU0-apc-g-01-0-UI /FEA=EST /CNT=5 /TID=Rn.41935.1 /TIER=ConsEnd /STK=4 /UG=Rn.41935 /UG_TITLE=ESTs BE096244 Eukaryotic translation initiation factor 4A1 Eif4a1 287436 NM_199372 0031100 // organ regeneration // inferred from expression pattern 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1377082_at BF567763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567763 /DB_XREF=gi:11677487 /DB_XREF=UI-R-BO0-ahk-h-08-0-UI.r1 /CLONE=UI-R-BO0-ahk-h-08-0-UI /FEA=EST /CNT=5 /TID=Rn.45449.1 /TIER=ConsEnd /STK=4 /UG=Rn.45449 /UG_TITLE=ESTs BF567763 1377083_at AA998190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998190 /DB_XREF=gi:4288145 /DB_XREF=UI-R-C0-ib-a-10-0-UI.s1 /CLONE=UI-R-C0-ib-a-10-0-UI /FEA=EST /CNT=5 /TID=Rn.9108.1 /TIER=ConsEnd /STK=4 /UG=Rn.9108 /UG_TITLE=ESTs AA998190 1377084_at BE106598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106598 /DB_XREF=gi:8498700 /DB_XREF=UI-R-BO1-asp-g-11-0-UI.s1 /CLONE=UI-R-BO1-asp-g-11-0-UI /FEA=EST /CNT=5 /TID=Rn.18129.1 /TIER=ConsEnd /STK=4 /UG=Rn.18129 /UG_TITLE=ESTs BE106598 1377085_at BF386665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386665 /DB_XREF=gi:11371489 /DB_XREF=UI-R-CA1-bbg-a-10-0-UI.s1 /CLONE=UI-R-CA1-bbg-a-10-0-UI /FEA=EST /CNT=5 /TID=Rn.16248.1 /TIER=ConsEnd /STK=4 /UG=Rn.16248 /UG_TITLE=ESTs BF386665 carbonic anhydrase 7 Car7 291819 NM_001106165 0006730 // one-carbon metabolic process // inferred from electronic annotation 0004089 // carbonate dehydratase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377086_at AI233530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233530 /DB_XREF=gi:4135879 /DB_XREF=EST230218 /CLONE=RKIDG72 /FEA=EST /CNT=5 /TID=Rn.16507.1 /TIER=ConsEnd /STK=4 /UG=Rn.16507 /UG_TITLE=ESTs AI233530 C1q and tumor necrosis factor related protein 3 C1qtnf3 294806 NM_001134436 1377087_at AA963029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963029 /DB_XREF=gi:4278000 /DB_XREF=UI-R-E1-fv-a-07-0-UI.s2 /CLONE=UI-R-E1-fv-a-07-0-UI /FEA=EST /CNT=5 /TID=Rn.12155.1 /TIER=ConsEnd /STK=4 /UG=Rn.12155 /UG_TITLE=ESTs AA963029 1377088_at BI275952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275952 /DB_XREF=gi:14920385 /DB_XREF=UI-R-CX0-bxi-d-07-0-UI.s1 /CLONE=UI-R-CX0-bxi-d-07-0-UI /FEA=EST /CNT=5 /TID=Rn.14715.1 /TIER=ConsEnd /STK=4 /UG=Rn.14715 /UG_TITLE=ESTs BI275952 similar to RIKEN cDNA 2310046K01 RGD1304644 311536 NM_001037198 0006810 // transport // inferred from electronic annotation /// 0007605 // sensory perception of sound // inferred from sequence or structural similarity /// 0032218 // riboflavin transport // inferred from direct assay /// 0034605 // cellular response to heat // inferred from electronic annotation /// 0034605 // cellular response to heat // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0032217 // riboflavin transporter activity // inferred from direct assay 1377089_a_at BG381571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381571 /DB_XREF=gi:13306043 /DB_XREF=UI-R-CT0-buk-g-11-0-UI.s1 /CLONE=UI-R-CT0-buk-g-11-0-UI /FEA=EST /CNT=5 /TID=Rn.7077.1 /TIER=ConsEnd /STK=4 /UG=Rn.7077 /UG_TITLE=ESTs BG381571 tetraspanin 5 Tspan5 362048 NM_001004090 0007155 // cell adhesion // traceable author statement /// 0008283 // cell proliferation // traceable author statement 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 1377090_at AI102881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102881 /DB_XREF=gi:3707532 /DB_XREF=EST212170 /CLONE=REMBU21 /FEA=EST /CNT=5 /TID=Rn.22443.1 /TIER=ConsEnd /STK=4 /UG=Rn.22443 /UG_TITLE=ESTs, Weakly similar to I60486 gene trg protein - rat (R.norvegicus) AI102881 dedicator of cytokinesis 6 Dock6 367039 NM_001108997 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0051020 // GTPase binding // inferred from electronic annotation 1377091_at AW524733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524733 /DB_XREF=gi:7167118 /DB_XREF=UI-R-BO0-aib-g-03-0-UI.s1 /CLONE=UI-R-BO0-aib-g-03-0-UI /FEA=EST /CNT=5 /TID=Rn.26791.1 /TIER=ConsEnd /STK=4 /UG=Rn.26791 /UG_TITLE=ESTs AW524733 proline-rich transmembrane protein 1 Prrt1 406167 NM_001032285 0009607 // response to biotic stimulus // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1377092_at BF389682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389682 /DB_XREF=gi:11374517 /DB_XREF=UI-R-BS2-bdn-e-06-0-UI.s1 /CLONE=UI-R-BS2-bdn-e-06-0-UI /FEA=EST /CNT=5 /TID=Rn.41848.1 /TIER=ConsEnd /STK=4 /UG=Rn.41848 /UG_TITLE=ESTs BF389682 1377093_at BE106555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106555 /DB_XREF=gi:8498657 /DB_XREF=UI-R-BO1-asp-d-01-0-UI.s1 /CLONE=UI-R-BO1-asp-d-01-0-UI /FEA=EST /CNT=5 /TID=Rn.16399.1 /TIER=ConsEnd /STK=4 /UG=Rn.16399 /UG_TITLE=ESTs BE106555 1377094_at BF393685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393685 /DB_XREF=gi:11378548 /DB_XREF=UI-R-CA0-bga-g-06-0-UI.s1 /CLONE=UI-R-CA0-bga-g-06-0-UI /FEA=EST /CNT=5 /TID=Rn.61109.1 /TIER=ConsEnd /STK=4 /UG=Rn.61109 /UG_TITLE=ESTs BF393685 1377095_at BG380409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380409 /DB_XREF=gi:13304881 /DB_XREF=UI-R-CT0-btw-h-07-0-UI.s1 /CLONE=UI-R-CT0-btw-h-07-0-UI /FEA=EST /CNT=5 /TID=Rn.41200.1 /TIER=ConsEnd /STK=4 /UG=Rn.41200 /UG_TITLE=ESTs, Weakly similar to ataxin 2 binding protein 1; ataxin 2-binding protein 1 (Mus musculus) (M.musculus) BG380409 hexaribonucleotide binding protein 3 Hrnbp3 287847 NM_001134498 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1377096_at AW251803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251803 /DB_XREF=gi:6595394 /DB_XREF=UI-R-BJ0-adl-b-04-0-UI.s1 /CLONE=UI-R-BJ0-adl-b-04-0-UI /FEA=EST /CNT=5 /TID=Rn.34645.1 /TIER=ConsEnd /STK=4 /UG=Rn.34645 /UG_TITLE=ESTs AW251803 mitochondrial methionyl-tRNA formyltransferase Mtfmt 315763 NM_001009697 0006412 // translation // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0004479 // methionyl-tRNA formyltransferase activity // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016742 // hydroxymethyl-, formyl- and related transferase activity // inferred from electronic annotation 1377097_at BF545080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545080 /DB_XREF=gi:11636187 /DB_XREF=UI-R-C2p-qt-a-02-0-UI.r1 /CLONE=UI-R-C2p-qt-a-02-0-UI /FEA=EST /CNT=5 /TID=Rn.7515.1 /TIER=ConsEnd /STK=4 /UG=Rn.7515 /UG_TITLE=ESTs, Weakly similar to COXG MOUSE CYTOCHROME C OXIDASE POLYPEPTIDE VIB (M.musculus) BF545080 cytochrome c oxidase subunit VIb polypeptide 2 Cox6b2 654441 NM_001039085 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0030061 // mitochondrial crista // inferred from electronic annotation /// 0030061 // mitochondrial crista // not recorded 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation 1377098_at BF283365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283365 /DB_XREF=gi:11214435 /DB_XREF=EST447956 /CLONE=RGIEA93 /FEA=EST /CNT=5 /TID=Rn.16632.1 /TIER=ConsEnd /STK=4 /UG=Rn.16632 /UG_TITLE=ESTs BF283365 1377099_at BM386767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386767 /DB_XREF=gi:18186820 /DB_XREF=UI-R-CN1-cjg-n-22-0-UI.s1 /CLONE=UI-R-CN1-cjg-n-22-0-UI /FEA=EST /CNT=5 /TID=Rn.33131.1 /TIER=ConsEnd /STK=4 /UG=Rn.33131 /UG_TITLE=ESTs BM386767 similar to RIKEN cDNA 2310042E22 RGD1560559 303817 XM_001058776 /// XM_221310 1377100_at AI172172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172172 /DB_XREF=gi:3712212 /DB_XREF=EST218167 /CLONE=RMUBV82 /FEA=EST /CNT=5 /TID=Rn.36838.1 /TIER=ConsEnd /STK=4 /UG=Rn.36838 /UG_TITLE=ESTs AI172172 PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae) Pds5b 304218 NM_001101805 /// NM_001102383 0007049 // cell cycle // inferred from electronic annotation /// 0007064 // mitotic sister chromatid cohesion // not recorded /// 0007064 // mitotic sister chromatid cohesion // inferred from sequence or structural similarity /// 0007067 // mitosis // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0051301 // cell division // inferred from electronic annotation 0000785 // chromatin // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1377101_at AI045635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045635 /DB_XREF=gi:3292454 /DB_XREF=UI-R-C1-ka-f-11-0-UI.s1 /CLONE=UI-R-C1-ka-f-11-0-UI /FEA=EST /CNT=5 /TID=Rn.22540.1 /TIER=ConsEnd /STK=4 /UG=Rn.22540 /UG_TITLE=ESTs AI045635 1377102_at BI288335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288335 /DB_XREF=gi:14944821 /DB_XREF=UI-R-DK0-ccz-f-12-0-UI.s1 /CLONE=UI-R-DK0-ccz-f-12-0-UI /FEA=EST /CNT=5 /TID=Rn.19355.1 /TIER=ConsEnd /STK=4 /UG=Rn.19355 /UG_TITLE=ESTs BI288335 transmembrane protein 63a Tmem63a 289318 NM_001134496 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation 1377103_at AW525765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525765 /DB_XREF=gi:7168150 /DB_XREF=UI-R-BJ0p-air-e-10-0-UI.s1 /CLONE=UI-R-BJ0p-air-e-10-0-UI /FEA=EST /CNT=5 /TID=Rn.19310.1 /TIER=ConsEnd /STK=4 /UG=Rn.19310 /UG_TITLE=ESTs AW525765 1377104_at AI175978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175978 /DB_XREF=gi:3726616 /DB_XREF=EST219554 /CLONE=ROVBH91 /FEA=EST /CNT=5 /TID=Rn.8500.1 /TIER=ConsEnd /STK=4 /UG=Rn.8500 /UG_TITLE=ESTs AI175978 1377105_at BM385715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385715 /DB_XREF=gi:18185768 /DB_XREF=UI-R-CN1-clx-i-24-0-UI.s1 /CLONE=UI-R-CN1-clx-i-24-0-UI /FEA=EST /CNT=5 /TID=Rn.23044.1 /TIER=ConsEnd /STK=4 /UG=Rn.23044 /UG_TITLE=ESTs, Weakly similar to TC17 RAT TRANSCRIPTION FACTOR 17 (R.norvegicus) BM385715 zinc finger protein 91 Zfp91 246282 NM_001169120 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1377106_at AW533050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533050 /DB_XREF=gi:7175464 /DB_XREF=UI-R-BU0-amz-c-04-0-UI.s1 /CLONE=UI-R-BU0-amz-c-04-0-UI /FEA=EST /CNT=5 /TID=Rn.33711.1 /TIER=ConsEnd /STK=4 /UG=Rn.33711 /UG_TITLE=ESTs AW533050 1377107_at BF393242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393242 /DB_XREF=gi:11378102 /DB_XREF=UI-R-CA0-bfs-e-02-0-UI.s1 /CLONE=UI-R-CA0-bfs-e-02-0-UI /FEA=EST /CNT=5 /TID=Rn.61668.1 /TIER=ConsEnd /STK=4 /UG=Rn.61668 /UG_TITLE=ESTs, Weakly similar to FNG DROME FRINGE PROTEIN PRECURSOR (D.melanogaster) BF393242 1377108_at BI296302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296302 /DB_XREF=gi:14960610 /DB_XREF=UI-R-DK0-cey-g-07-0-UI.s1 /CLONE=UI-R-DK0-cey-g-07-0-UI /FEA=EST /CNT=5 /TID=Rn.62655.1 /TIER=ConsEnd /STK=4 /UG=Rn.62655 /UG_TITLE=ESTs BI296302 Smith-Magenis syndrome chromosome region, candidate 7-like (human) Smcr7l 315141 NM_001007709 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1377109_at AA957450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957450 /DB_XREF=gi:4277340 /DB_XREF=UI-R-E1-fy-h-11-0-UI.s1 /CLONE=UI-R-E1-fy-h-11-0-UI /FEA=EST /CNT=5 /TID=Rn.23159.1 /TIER=ConsEnd /STK=4 /UG=Rn.23159 /UG_TITLE=ESTs AA957450 Eukaryotic translation initiation factor 4 gamma, 1 Eif4g1 287986 XM_001060756 /// XM_002724743 /// XM_002727923 /// XM_213569 0006446 // regulation of translational initiation // not recorded /// 0016070 // RNA metabolic process // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0016281 // eukaryotic translation initiation factor 4F complex // inferred from direct assay /// 0016281 // eukaryotic translation initiation factor 4F complex // inferred from mutant phenotype 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008190 // eukaryotic initiation factor 4E binding // inferred from mutant phenotype /// 0008190 // eukaryotic initiation factor 4E binding // inferred from physical interaction 1377110_at BF420720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420720 /DB_XREF=gi:11408709 /DB_XREF=UI-R-BJ2-bpz-c-09-0-UI.s1 /CLONE=UI-R-BJ2-bpz-c-09-0-UI /FEA=EST /CNT=5 /TID=Rn.23998.1 /TIER=ConsEnd /STK=4 /UG=Rn.23998 /UG_TITLE=ESTs BF420720 ADP-ribosylation factor-like 5C Arl5c 497990 NM_001109046 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1377111_at BI295188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295188 /DB_XREF=gi:14958383 /DB_XREF=UI-R-DK0-ceg-g-10-0-UI.s1 /CLONE=UI-R-DK0-ceg-g-10-0-UI /FEA=EST /CNT=5 /TID=Rn.39254.1 /TIER=ConsEnd /STK=4 /UG=Rn.39254 /UG_TITLE=ESTs BI295188 1377112_at AA859352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859352 /DB_XREF=gi:4229700 /DB_XREF=UI-R-E0-cl-c-03-0-UI.s1 /CLONE=UI-R-E0-cl-c-03-0-UI /FEA=EST /CNT=5 /TID=Rn.6887.1 /TIER=ConsEnd /STK=4 /UG=Rn.6887 /UG_TITLE=ESTs, Highly similar to CDD MOUSE CYTIDINE DEAMINASE (M.musculus) AA859352 cytidine deaminase Cda 362638 NM_001108688 0009972 // cytidine deamination // inferred from direct assay /// 0009972 // cytidine deamination // not recorded /// 0030308 // negative regulation of cell growth // not recorded /// 0045980 // negative regulation of nucleotide metabolic process // not recorded /// 0046087 // cytidine metabolic process // inferred from electronic annotation /// 0046898 // response to cycloheximide // inferred from expression pattern /// 0051289 // protein homotetramerization // not recorded /// 0071217 // cellular response to external biotic stimulus // inferred from expression pattern 0005829 // cytosol // inferred from direct assay 0001882 // nucleoside binding // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004126 // cytidine deaminase activity // inferred from direct assay /// 0004126 // cytidine deaminase activity // inferred from electronic annotation /// 0004126 // cytidine deaminase activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1377113_at BF415786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415786 /DB_XREF=gi:11403775 /DB_XREF=UI-R-CA0-bke-h-05-0-UI.s1 /CLONE=UI-R-CA0-bke-h-05-0-UI /FEA=EST /CNT=5 /TID=Rn.21859.1 /TIER=ConsEnd /STK=4 /UG=Rn.21859 /UG_TITLE=ESTs BF415786 1377114_at AI410861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410861 /DB_XREF=gi:4254365 /DB_XREF=EST239154 /CLONE=RHECZ07 /FEA=EST /CNT=5 /TID=Rn.3800.1 /TIER=ConsEnd /STK=4 /UG=Rn.3800 /UG_TITLE=ESTs AI410861 1377115_at AW254275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254275 /DB_XREF=gi:6597866 /DB_XREF=UI-R-BJ0-aev-g-05-0-UI.s1 /CLONE=UI-R-BJ0-aev-g-05-0-UI /FEA=EST /CNT=5 /TID=Rn.41073.1 /TIER=ConsEnd /STK=4 /UG=Rn.41073 /UG_TITLE=ESTs AW254275 1377116_at BI301478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301478 /DB_XREF=gi:14977758 /DB_XREF=UI-R-DN0-cit-i-13-0-UI.s1 /CLONE=UI-R-DN0-cit-i-13-0-UI /FEA=EST /CNT=5 /TID=Rn.23435.1 /TIER=ConsEnd /STK=4 /UG=Rn.23435 /UG_TITLE=ESTs BI301478 Ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent) Rnasel 359726 NM_182673 0006364 // rRNA processing // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation 0016363 // nuclear matrix // inferred from direct assay 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0004540 // ribonuclease activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016891 // endoribonuclease activity, producing 5'-phosphomonoesters // inferred from electronic annotation /// 0019843 // rRNA binding // inferred from direct assay 1377117_at BF387780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387780 /DB_XREF=gi:11372645 /DB_XREF=UI-R-CA1-bbv-b-08-0-UI.s1 /CLONE=UI-R-CA1-bbv-b-08-0-UI /FEA=EST /CNT=5 /TID=Rn.60221.1 /TIER=ConsEnd /STK=4 /UG=Rn.60221 /UG_TITLE=ESTs BF387780 1377118_at AW916012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916012 /DB_XREF=gi:8081727 /DB_XREF=EST347316 /CLONE=RGIDE88 /FEA=EST /CNT=5 /TID=Rn.18903.1 /TIER=ConsEnd /STK=4 /UG=Rn.18903 /UG_TITLE=ESTs AW916012 similar to KIAA1712 protein RGD1308517 290722 NM_001037181 1377119_at AI704675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI704675 /DB_XREF=gi:4992575 /DB_XREF=UI-R-AE0-xl-a-05-0-UI.s1 /CLONE=UI-R-AE0-xl-a-05-0-UI /FEA=EST /CNT=5 /TID=Rn.41055.1 /TIER=ConsEnd /STK=4 /UG=Rn.41055 /UG_TITLE=ESTs, Highly similar to PUR MOUSE TRANSCRIPTIONAL ACTIVATOR PROTEIN PUR-ALPHA (M.musculus) AI704675 purine rich element binding protein A Pura 307498 XM_001063244 /// XM_226016 0006268 // DNA unwinding involved in replication // inferred from electronic annotation /// 0006268 // DNA unwinding involved in replication // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005662 // DNA replication factor A complex // inferred from electronic annotation /// 0005662 // DNA replication factor A complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003690 // double-stranded DNA binding // not recorded /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003691 // double-stranded telomeric DNA binding // inferred from electronic annotation /// 0003691 // double-stranded telomeric DNA binding // not recorded /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046332 // SMAD binding // not recorded 1377120_at AI385307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385307 /DB_XREF=gi:4198089 /DB_XREF=UI-R-C2-mw-e-07-0-UI.s2 /CLONE=UI-R-C2-mw-e-07-0-UI /FEA=EST /CNT=5 /TID=Rn.29875.1 /TIER=ConsEnd /STK=4 /UG=Rn.29875 /UG_TITLE=ESTs, Weakly similar to WDR9_HUMAN WD-REPEAT PROTEIN 9 (H.sapiens) AI385307 1377121_at AW520410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520410 /DB_XREF=gi:7162788 /DB_XREF=UI-R-BJ0p-afs-b-12-0-UI.s1 /CLONE=UI-R-BJ0p-afs-b-12-0-UI /FEA=EST /CNT=5 /TID=Rn.12598.1 /TIER=ConsEnd /STK=4 /UG=Rn.12598 /UG_TITLE=ESTs AW520410 0042981 // regulation of apoptosis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1377122_at AI454840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454840 /DB_XREF=gi:4296539 /DB_XREF=UI-R-BT0-qk-c-11-0-UI.s1 /CLONE=UI-R-BT0-qk-c-11-0-UI /FEA=EST /CNT=5 /TID=Rn.24207.1 /TIER=ConsEnd /STK=4 /UG=Rn.24207 /UG_TITLE=ESTs AI454840 1377123_at BI286134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286134 /DB_XREF=gi:14940479 /DB_XREF=UI-R-DE0-cah-b-03-0-UI.s1 /CLONE=UI-R-DE0-cah-b-03-0-UI /FEA=EST /CNT=5 /TID=Rn.38823.1 /TIER=ConsEnd /STK=4 /UG=Rn.38823 /UG_TITLE=ESTs BI286134 solute carrier family 27 (fatty acid transporter), member 4 Slc27a4 311839 NM_001100706 /// XM_001079409 /// XM_231115 0000038 // very long-chain fatty acid metabolic process // not recorded /// 0000038 // very long-chain fatty acid metabolic process // inferred from electronic annotation /// 0001579 // medium-chain fatty acid transport // inferred from electronic annotation /// 0001579 // medium-chain fatty acid transport // not recorded /// 0001676 // long-chain fatty acid metabolic process // inferred from electronic annotation /// 0001676 // long-chain fatty acid metabolic process // not recorded /// 0006631 // fatty acid metabolic process // not recorded /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0015909 // long-chain fatty acid transport // inferred from electronic annotation /// 0015909 // long-chain fatty acid transport // not recorded /// 0042760 // very long-chain fatty acid catabolic process // inferred from electronic annotation /// 0042760 // very long-chain fatty acid catabolic process // not recorded /// 0043588 // skin development // inferred from electronic annotation /// 0043588 // skin development // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005902 // microvillus // inferred from electronic annotation /// 0005902 // microvillus // not recorded /// 0031526 // brush border membrane // inferred from electronic annotation /// 0031526 // brush border membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from electronic annotation /// 0004467 // long-chain fatty acid-CoA ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0031957 // very long-chain fatty acid-CoA ligase activity // inferred from electronic annotation /// 0031957 // very long-chain fatty acid-CoA ligase activity // not recorded 1377124_at AA964824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964824 /DB_XREF=gi:4279698 /DB_XREF=UI-R-C0-gx-b-07-0-UI.s1 /CLONE=UI-R-C0-gx-b-07-0-UI /FEA=EST /CNT=5 /TID=Rn.20005.1 /TIER=ConsEnd /STK=4 /UG=Rn.20005 /UG_TITLE=ESTs, Moderately similar to S48059 metal-regulatory transcription factor (H.sapiens) AA964824 metal-regulatory transcription factor 1 Mtf1 362591 NM_001108677 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006979 // response to oxidative stress // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046686 // response to cadmium ion // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042156 // zinc-mediated transcriptional activator activity // not recorded 1377125_at AW523481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523481 /DB_XREF=gi:7165866 /DB_XREF=UI-R-BO0-aho-f-08-0-UI.s1 /CLONE=UI-R-BO0-aho-f-08-0-UI /FEA=EST /CNT=5 /TID=Rn.23812.1 /TIER=ConsEnd /STK=4 /UG=Rn.23812 /UG_TITLE=ESTs AW523481 DnaJ (Hsp40) homolog, subfamily C, member 6 Dnajc6 313409 NM_001107949 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0016044 // cellular membrane organization // not recorded 0031072 // heat shock protein binding // inferred from electronic annotation 1377126_at BM386954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386954 /DB_XREF=gi:18187007 /DB_XREF=UI-R-CN1-cji-c-07-0-UI.s1 /CLONE=UI-R-CN1-cji-c-07-0-UI /FEA=EST /CNT=5 /TID=Rn.12079.2 /TIER=ConsEnd /STK=4 /UG=Rn.12079 /UG_TITLE=ESTs BM386954 1377127_at BF418925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418925 /DB_XREF=gi:11406914 /DB_XREF=UI-R-BJ2-bqk-e-06-0-UI.s1 /CLONE=UI-R-BJ2-bqk-e-06-0-UI /FEA=EST /CNT=5 /TID=Rn.64221.1 /TIER=ConsEnd /STK=4 /UG=Rn.64221 /UG_TITLE=ESTs BF418925 1377128_at AI412407 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412407 /DB_XREF=gi:4255911 /DB_XREF=EST240706 /CLONE=RBRDU30 /FEA=EST /CNT=5 /TID=Rn.41311.1 /TIER=ConsEnd /STK=4 /UG=Rn.41311 /UG_TITLE=ESTs, Highly similar to F8I2 MOUSE FACTOR VIII INTRON 22 PROTEIN (M.musculus) AI412407 coagulation factor VIII-associated (intronic transcript) 1 F8a1 501661 NM_001109323 0005634 // nucleus // not recorded 0005488 // binding // inferred from electronic annotation 1377129_at BF419558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419558 /DB_XREF=gi:11407547 /DB_XREF=UI-R-CA0-bpd-d-10-0-UI.s1 /CLONE=UI-R-CA0-bpd-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.63810.1 /TIER=ConsEnd /STK=4 /UG=Rn.63810 /UG_TITLE=ESTs BF419558 F-box protein 39 Fbxo39 303287 NM_001039018 1377130_at AW526352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526352 /DB_XREF=gi:7168737 /DB_XREF=UI-R-BO1-ajb-b-08-0-UI.s1 /CLONE=UI-R-BO1-ajb-b-08-0-UI /FEA=EST /CNT=5 /TID=Rn.7919.1 /TIER=ConsEnd /STK=4 /UG=Rn.7919 /UG_TITLE=ESTs AW526352 1377131_at BE096220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096220 /DB_XREF=gi:8487151 /DB_XREF=UI-R-BU0-apc-d-11-0-UI.s1 /CLONE=UI-R-BU0-apc-d-11-0-UI /FEA=EST /CNT=5 /TID=Rn.44935.1 /TIER=ConsEnd /STK=4 /UG=Rn.44935 /UG_TITLE=ESTs, Weakly similar to T31611 hypothetical protein Y50E8A.g - Caenorhabditis elegans (C.elegans) BE096220 Suppressor of cytokine signaling 7 Socs7 287659 XM_001081372 /// XM_213443 0008286 // insulin receptor signaling pathway // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0045444 // fat cell differentiation // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1377132_at AW527797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527797 /DB_XREF=gi:7170176 /DB_XREF=UI-R-BT1-ajy-h-04-0-UI.s1 /CLONE=UI-R-BT1-ajy-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.16335.1 /TIER=ConsEnd /STK=4 /UG=Rn.16335 /UG_TITLE=ESTs AW527797 1377133_at BE100973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100973 /DB_XREF=gi:8492876 /DB_XREF=UI-R-BJ1-aug-f-06-0-UI.s1 /CLONE=UI-R-BJ1-aug-f-06-0-UI /FEA=EST /CNT=5 /TID=Rn.40935.1 /TIER=ConsEnd /STK=4 /UG=Rn.40935 /UG_TITLE=ESTs BE100973 Hypothetical protein LOC680687 LOC680687 680687 XM_001058380 /// XM_001077785 1377134_at AI454378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454378 /DB_XREF=gi:4293307 /DB_XREF=UI-R-A0-bb-a-05-0-UI.s1 /CLONE=UI-R-A0-bb-a-05-0-UI /FEA=EST /CNT=5 /TID=Rn.22866.1 /TIER=ConsEnd /STK=4 /UG=Rn.22866 /UG_TITLE=ESTs, Moderately similar to I78879 retinoblastoma binding protein 2 (H.sapiens) AI454378 lysine (K)-specific demethylase 5B Kdm5b 304809 NM_001107177 0034720 // histone H3-K4 demethylation // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0034647 // histone demethylase activity (H3-trimethyl-K4 specific) // not recorded /// 0034648 // histone demethylase activity (H3-dimethyl-K4 specific) // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1377135_at AA944958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944958 /DB_XREF=gi:3104874 /DB_XREF=EST200457 /CLONE=RKIAU88 /FEA=EST /CNT=5 /TID=Rn.22711.1 /TIER=ConsEnd /STK=4 /UG=Rn.22711 /UG_TITLE=ESTs AA944958 1377136_at AW254190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254190 /DB_XREF=gi:6597781 /DB_XREF=UI-R-BJ0-aeu-e-06-0-UI.s1 /CLONE=UI-R-BJ0-aeu-e-06-0-UI /FEA=EST /CNT=5 /TID=Rn.41062.1 /TIER=ConsEnd /STK=4 /UG=Rn.41062 /UG_TITLE=ESTs AW254190 1377137_at BG379860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379860 /DB_XREF=gi:13304332 /DB_XREF=UI-R-CS0-btk-a-10-0-UI.s1 /CLONE=UI-R-CS0-btk-a-10-0-UI /FEA=EST /CNT=5 /TID=Rn.12661.1 /TIER=ConsEnd /STK=4 /UG=Rn.12661 /UG_TITLE=ESTs BG379860 tyrosyl-DNA phosphodiesterase 1 Tdp1 314380 NM_001031657 0000012 // single strand break repair // inferred from electronic annotation /// 0000012 // single strand break repair // not recorded /// 0006281 // DNA repair // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006302 // double-strand break repair // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // not recorded /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // not recorded /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017005 // 3'-tyrosyl-DNA phosphodiesterase activity // inferred from electronic annotation /// 0017005 // 3'-tyrosyl-DNA phosphodiesterase activity // not recorded 1377138_at AI709547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709547 /DB_XREF=gi:4999323 /DB_XREF=UI-R-C3-tn-e-10-0-UI.s1 /CLONE=UI-R-C3-tn-e-10-0-UI /FEA=EST /CNT=5 /TID=Rn.19888.1 /TIER=ConsEnd /STK=4 /UG=Rn.19888 /UG_TITLE=ESTs AI709547 1377139_at BE110811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110811 /DB_XREF=gi:8502916 /DB_XREF=UI-R-BJ1-aus-c-04-0-UI.s1 /CLONE=UI-R-BJ1-aus-c-04-0-UI /FEA=EST /CNT=5 /TID=Rn.6327.1 /TIER=ConsEnd /STK=4 /UG=Rn.6327 /UG_TITLE=ESTs BE110811 T-box 5 Tbx5 304514 NM_001009964 0002009 // morphogenesis of an epithelium // inferred from electronic annotation /// 0002009 // morphogenesis of an epithelium // not recorded /// 0003166 // bundle of His development // inferred from electronic annotation /// 0003166 // bundle of His development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from sequence or structural similarity /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0007267 // cell-cell signaling // inferred from sequence or structural similarity /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from sequence or structural similarity /// 0007507 // heart development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from sequence or structural similarity /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // not recorded /// 0030336 // negative regulation of cell migration // inferred from sequence or structural similarity /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0035115 // embryonic forelimb morphogenesis // not recorded /// 0035115 // embryonic forelimb morphogenesis // inferred from electronic annotation /// 0035117 // embryonic arm morphogenesis // not recorded /// 0035117 // embryonic arm morphogenesis // inferred from sequence or structural similarity /// 0035117 // embryonic arm morphogenesis // inferred from electronic annotation /// 0035136 // forelimb morphogenesis // not recorded /// 0035136 // forelimb morphogenesis // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0051891 // positive regulation of cardioblast differentiation // not recorded /// 0051891 // positive regulation of cardioblast differentiation // inferred from sequence or structural similarity /// 0051891 // positive regulation of cardioblast differentiation // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0060039 // pericardium development // not recorded /// 0060039 // pericardium development // inferred from sequence or structural similarity /// 0060039 // pericardium development // inferred from electronic annotation /// 0060044 // negative regulation of cardiac muscle cell proliferation // not recorded /// 0060044 // negative regulation of cardiac muscle cell proliferation // inferred from sequence or structural similarity /// 0060044 // negative regulation of cardiac muscle cell proliferation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0003702 // RNA polymerase II transcription factor activity // inferred from sequence or structural similarity /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1377140_at AI555002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555002 /DB_XREF=gi:4487365 /DB_XREF=UI-R-C2p-qu-f-05-0-UI.s1 /CLONE=UI-R-C2p-qu-f-05-0-UI /FEA=EST /CNT=5 /TID=Rn.34919.1 /TIER=ConsEnd /STK=4 /UG=Rn.34919 /UG_TITLE=ESTs, Highly similar to hypothetical protein (H.sapiens) AI555002 family with sequence similarity 171, member A1 /// hypothetical protein LOC684862 Fam171a1 /// LOC684862 680259 /// 684862 XM_001056358 /// XM_001072231 1377141_at AI103397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103397 /DB_XREF=gi:3707946 /DB_XREF=EST212686 /CLONE=REMCB48 /FEA=EST /CNT=8 /TID=Rn.29896.1 /TIER=ConsEnd /STK=4 /UG=Rn.29896 /UG_TITLE=ESTs AI103397 1377142_at AW531487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531487 /DB_XREF=gi:7173901 /DB_XREF=UI-R-BO1-aji-e-11-0-UI.s1 /CLONE=UI-R-BO1-aji-e-11-0-UI /FEA=EST /CNT=8 /TID=Rn.23617.1 /TIER=ConsEnd /STK=4 /UG=Rn.23617 /UG_TITLE=ESTs AW531487 1377143_at BM388792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388792 /DB_XREF=gi:18188845 /DB_XREF=UI-R-DZ0-ckn-k-09-0-UI.s1 /CLONE=UI-R-DZ0-ckn-k-09-0-UI /FEA=EST /CNT=8 /TID=Rn.12205.2 /TIER=ConsEnd /STK=4 /UG=Rn.12205 /UG_TITLE=ESTs, Highly similar to JC5026 UDP-galactose transporter related protein 1 - rat (R.norvegicus) BM388792 solute carrier family 35, member B1 Slc35b1 287642 NM_199081 0006810 // transport // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1377144_at AA944584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944584 /DB_XREF=gi:4132430 /DB_XREF=EST200083 /CLONE=REMAL40 /FEA=EST /CNT=7 /TID=Rn.13026.1 /TIER=ConsEnd /STK=4 /UG=Rn.13026 /UG_TITLE=ESTs AA944584 RGD1564982 RGD1564982 308556 XM_001080344 /// XM_218633 1377145_at BI296089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296089 /DB_XREF=gi:14960182 /DB_XREF=UI-R-DK0-cew-c-01-0-UI.s1 /CLONE=UI-R-DK0-cew-c-01-0-UI /FEA=EST /CNT=6 /TID=Rn.16647.1 /TIER=ConsEnd /STK=4 /UG=Rn.16647 /UG_TITLE=ESTs BI296089 G protein-coupled receptor 98 /// similar to very large G-protein coupled receptor 1 Gpr98 /// RGD1562101 294614 /// 685383 XM_001063571 /// XM_002725894 /// XM_002728989 /// XM_215439 0007154 // cell communication // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1377146_at AI412212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412212 /DB_XREF=gi:4255716 /DB_XREF=EST240507 /CLONE=RBRDY57 /FEA=EST /CNT=6 /TID=Rn.18675.1 /TIER=ConsEnd /STK=4 /UG=Rn.18675 /UG_TITLE=ESTs, Highly similar to 1701412A vasoactive intestinal peptide (R.norvegicus) AI412212 vasoactive intestinal peptide Vip 117064 NM_053991 0042311 // vasodilation // non-traceable author statement 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation 1377147_at AI171242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171242 /DB_XREF=gi:3711282 /DB_XREF=EST217197 /CLONE=RMUBI05 /FEA=EST /CNT=6 /TID=Rn.13671.1 /TIER=ConsEnd /STK=4 /UG=Rn.13671 /UG_TITLE=ESTs AI171242 TBC1 domain family, member 7 Tbc1d7 361227 NM_001108411 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1377148_at AI412344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412344 /DB_XREF=gi:4255848 /DB_XREF=EST240642 /CLONE=RBRDV85 /FEA=EST /CNT=6 /TID=Rn.21570.1 /TIER=ConsEnd /STK=4 /UG=Rn.21570 /UG_TITLE=ESTs AI412344 1377149_at BM386122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386122 /DB_XREF=gi:18186175 /DB_XREF=UI-R-CN1-cjf-c-05-0-UI.s1 /CLONE=UI-R-CN1-cjf-c-05-0-UI /FEA=EST /CNT=6 /TID=Rn.777.1 /TIER=ConsEnd /STK=4 /UG=Rn.777 /UG_TITLE=ESTs BM386122 1377150_at BF420136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420136 /DB_XREF=gi:11408125 /DB_XREF=UI-R-BJ2-bpj-d-01-0-UI.s1 /CLONE=UI-R-BJ2-bpj-d-01-0-UI /FEA=EST /CNT=6 /TID=Rn.22856.1 /TIER=ConsEnd /STK=4 /UG=Rn.22856 /UG_TITLE=ESTs BF420136 1377151_at AI102833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102833 /DB_XREF=gi:4134123 /DB_XREF=EST212122 /CLONE=REMBT47 /FEA=EST /CNT=6 /TID=Rn.22330.1 /TIER=ConsEnd /STK=4 /UG=Rn.22330 /UG_TITLE=ESTs AI102833 1377152_at AI111991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111991 /DB_XREF=gi:3511940 /DB_XREF=UI-R-Y0-mo-h-10-0-UI.s1 /CLONE=UI-R-Y0-mo-h-10-0-UI /FEA=EST /CNT=6 /TID=Rn.22170.1 /TIER=ConsEnd /STK=4 /UG=Rn.22170 /UG_TITLE=ESTs AI111991 regulatory factor X, 1 (influences HLA class II expression) Rfx1 288906 NM_001105944 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1377153_a_at AI178384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178384 /DB_XREF=gi:4135066 /DB_XREF=EST222053 /CLONE=RPLCP83 /FEA=EST /CNT=2 /TID=Rn.11925.2 /TIER=ConsEnd /STK=1 /UG=Rn.11925 /UG_TITLE=ESTs AI178384 kelch-like 6 (Drosophila) Klhl6 287974 NM_001105867 0002467 // germinal center formation // not recorded /// 0050853 // B cell receptor signaling pathway // not recorded 0005515 // protein binding // inferred from electronic annotation 1377154_at BI295766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295766 /DB_XREF=gi:14959542 /DB_XREF=UI-R-DK0-cfa-d-05-0-UI.s1 /CLONE=UI-R-DK0-cfa-d-05-0-UI /FEA=EST /CNT=5 /TID=Rn.45139.1 /TIER=ConsEnd /STK=4 /UG=Rn.45139 /UG_TITLE=ESTs BI295766 zinc finger protein 157 Zfp157 360775 NM_001170404 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377155_at BI294806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294806 /DB_XREF=gi:14957619 /DB_XREF=UI-R-DK0-cec-d-04-0-UI.s1 /CLONE=UI-R-DK0-cec-d-04-0-UI /FEA=EST /CNT=5 /TID=Rn.18519.1 /TIER=ConsEnd /STK=4 /UG=Rn.18519 /UG_TITLE=ESTs BI294806 1377156_at BI273936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI273936 /DB_XREF=gi:14884383 /DB_XREF=UI-R-CW0-bwa-g-02-0-UI.s1 /CLONE=UI-R-CW0-bwa-g-02-0-UI /FEA=EST /CNT=5 /TID=Rn.22251.1 /TIER=ConsEnd /STK=4 /UG=Rn.22251 /UG_TITLE=ESTs BI273936 transcription factor 7-like 2 (T-cell specific, HMG-box) Tcf7l2 679869 NM_001191052 /// XM_001054844 /// XM_001072143 /// XM_001072429 /// XM_001072472 /// XM_001072554 /// XM_002725792 /// XM_002725793 0001568 // blood vessel development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0008283 // cell proliferation // not recorded /// 0009749 // response to glucose stimulus // not recorded /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0010909 // positive regulation of heparan sulfate proteoglycan biosynthetic process // not recorded /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0021915 // neural tube development // not recorded /// 0030538 // embryonic genitalia morphogenesis // not recorded /// 0032024 // positive regulation of insulin secretion // not recorded /// 0032092 // positive regulation of protein binding // not recorded /// 0032350 // regulation of hormone metabolic process // not recorded /// 0035019 // somatic stem cell maintenance // not recorded /// 0042593 // glucose homeostasis // not recorded /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0043570 // maintenance of DNA repeat elements // not recorded /// 0045444 // fat cell differentiation // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046827 // positive regulation of protein export from nucleus // not recorded /// 0048557 // embryonic digestive tract morphogenesis // not recorded /// 0048619 // embryonic hindgut morphogenesis // not recorded /// 0048625 // myoblast cell fate commitment // not recorded /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // not recorded /// 0005829 // cytosol // not recorded /// 0032993 // protein-DNA complex // not recorded /// 0070369 // beta-catenin-TCF7L2 complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008013 // beta-catenin binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0019901 // protein kinase binding // not recorded /// 0035257 // nuclear hormone receptor binding // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0045295 // gamma-catenin binding // not recorded 1377157_at BI273815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI273815 /DB_XREF=gi:14884137 /DB_XREF=UI-R-CW0-bvz-c-10-0-UI.s1 /CLONE=UI-R-CW0-bvz-c-10-0-UI /FEA=EST /CNT=5 /TID=Rn.15310.1 /TIER=ConsEnd /STK=4 /UG=Rn.15310 /UG_TITLE=ESTs, Weakly similar to T43481 probable mucin DKFZp434C196.1 (H.sapiens) BI273815 similar to KIAA0947 protein RGD1309747 306665 XM_001062297 /// XM_225143 1377158_at BE119692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119692 /DB_XREF=gi:8511797 /DB_XREF=UI-R-CA0-baz-g-11-0-UI.s1 /CLONE=UI-R-CA0-baz-g-11-0-UI /FEA=EST /CNT=5 /TID=Rn.45386.1 /TIER=ConsEnd /STK=4 /UG=Rn.45386 /UG_TITLE=ESTs BE119692 1377159_at BE120729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120729 /DB_XREF=gi:8512834 /DB_XREF=UI-R-CA0-bay-h-04-0-UI.s1 /CLONE=UI-R-CA0-bay-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.21359.1 /TIER=ConsEnd /STK=4 /UG=Rn.21359 /UG_TITLE=ESTs BE120729 1377160_at BF401689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401689 /DB_XREF=gi:11389664 /DB_XREF=UI-R-CA0-bgn-e-05-0-UI.s1 /CLONE=UI-R-CA0-bgn-e-05-0-UI /FEA=EST /CNT=5 /TID=Rn.61205.1 /TIER=ConsEnd /STK=4 /UG=Rn.61205 /UG_TITLE=ESTs BF401689 1377161_at BG378317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378317 /DB_XREF=gi:13302789 /DB_XREF=UI-R-CV1-bvq-f-09-0-UI.s1 /CLONE=UI-R-CV1-bvq-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.34711.1 /TIER=ConsEnd /STK=4 /UG=Rn.34711 /UG_TITLE=ESTs BG378317 1377162_at BF390386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390386 /DB_XREF=gi:11375232 /DB_XREF=UI-R-CA1-bcg-d-06-0-UI.s1 /CLONE=UI-R-CA1-bcg-d-06-0-UI /FEA=EST /CNT=5 /TID=Rn.49142.1 /TIER=ConsEnd /STK=4 /UG=Rn.49142 /UG_TITLE=ESTs BF390386 1377163_at BM385741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385741 /DB_XREF=gi:18185794 /DB_XREF=UI-R-CN1-clx-o-12-0-UI.s1 /CLONE=UI-R-CN1-clx-o-12-0-UI /FEA=EST /CNT=5 /TID=Rn.35074.1 /TIER=ConsEnd /STK=4 /UG=Rn.35074 /UG_TITLE=ESTs BM385741 inhibin beta-B Inhbb 25196 NM_080771 0009267 // cellular response to starvation // not recorded /// 0009267 // cellular response to starvation // inferred from sequence or structural similarity /// 0009605 // response to external stimulus // not recorded /// 0009605 // response to external stimulus // inferred from sequence or structural similarity /// 0009605 // response to external stimulus // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from sequence or structural similarity /// 0032924 // activin receptor signaling pathway // not recorded /// 0032924 // activin receptor signaling pathway // inferred from sequence or structural similarity /// 0040007 // growth // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0044320 // cellular response to leptin stimulus // not recorded /// 0045444 // fat cell differentiation // not recorded /// 0045444 // fat cell differentiation // inferred from sequence or structural similarity /// 0046676 // negative regulation of insulin secretion // not recorded /// 0046676 // negative regulation of insulin secretion // inferred from sequence or structural similarity /// 0046676 // negative regulation of insulin secretion // inferred from electronic annotation /// 0046881 // positive regulation of follicle-stimulating hormone secretion // not recorded /// 0046881 // positive regulation of follicle-stimulating hormone secretion // inferred from sequence or structural similarity /// 0046881 // positive regulation of follicle-stimulating hormone secretion // inferred from electronic annotation /// 0046882 // negative regulation of follicle-stimulating hormone secretion // not recorded /// 0046882 // negative regulation of follicle-stimulating hormone secretion // inferred from sequence or structural similarity /// 0046882 // negative regulation of follicle-stimulating hormone secretion // inferred from electronic annotation /// 0048178 // negative regulation of hepatocyte growth factor biosynthetic process // not recorded /// 0048178 // negative regulation of hepatocyte growth factor biosynthetic process // inferred from sequence or structural similarity /// 0048178 // negative regulation of hepatocyte growth factor biosynthetic process // inferred from electronic annotation /// 0048599 // oocyte development // not recorded /// 0060279 // positive regulation of ovulation // not recorded /// 0060279 // positive regulation of ovulation // inferred from sequence or structural similarity /// 0071397 // cellular response to cholesterol // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0005179 // hormone activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation 1377164_at BE100632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100632 /DB_XREF=gi:8492529 /DB_XREF=UI-R-BJ1-auk-f-05-0-UI.s1 /CLONE=UI-R-BJ1-auk-f-05-0-UI /FEA=EST /CNT=5 /TID=Rn.3337.1 /TIER=ConsEnd /STK=4 /UG=Rn.3337 /UG_TITLE=ESTs BE100632 1377165_at BF420664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420664 /DB_XREF=gi:11408653 /DB_XREF=UI-R-BJ2-bpy-f-09-0-UI.s1 /CLONE=UI-R-BJ2-bpy-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.9371.1 /TIER=ConsEnd /STK=4 /UG=Rn.9371 /UG_TITLE=ESTs BF420664 1377166_at BI274184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274184 /DB_XREF=gi:14884864 /DB_XREF=UI-R-CW0-bwg-a-04-0-UI.s1 /CLONE=UI-R-CW0-bwg-a-04-0-UI /FEA=EST /CNT=5 /TID=Rn.6408.1 /TIER=ConsEnd /STK=4 /UG=Rn.6408 /UG_TITLE=ESTs BI274184 Amyotrophic lateral sclerosis 2 (juvenile) homolog (human) Als2 363235 NM_001013413 0001662 // behavioral fear response // inferred from electronic annotation /// 0001662 // behavioral fear response // not recorded /// 0001701 // in utero embryonic development // inferred from expression pattern /// 0001881 // receptor recycling // inferred from electronic annotation /// 0001881 // receptor recycling // not recorded /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0007032 // endosome organization // not recorded /// 0007409 // axonogenesis // inferred from mutant phenotype /// 0007528 // neuromuscular junction development // inferred from electronic annotation /// 0007528 // neuromuscular junction development // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0008219 // cell death // inferred from mutant phenotype /// 0016050 // vesicle organization // inferred from electronic annotation /// 0016050 // vesicle organization // not recorded /// 0016197 // endosome transport // inferred from electronic annotation /// 0016197 // endosome transport // not recorded /// 0016601 // Rac protein signal transduction // inferred from direct assay /// 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// 0032313 // regulation of Rab GTPase activity // not recorded /// 0032855 // positive regulation of Rac GTPase activity // not recorded /// 0032855 // positive regulation of Rac GTPase activity // inferred from sequence or structural similarity /// 0032855 // positive regulation of Rac GTPase activity // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0035249 // synaptic transmission, glutamatergic // inferred from electronic annotation /// 0035249 // synaptic transmission, glutamatergic // not recorded /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from sequence or structural similarity /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0048812 // neuron projection morphogenesis // not recorded /// 0048812 // neuron projection morphogenesis // inferred from sequence or structural similarity /// 0048812 // neuron projection morphogenesis // inferred from electronic annotation /// 0051036 // regulation of endosome size // not recorded /// 0051036 // regulation of endosome size // inferred from sequence or structural similarity /// 0051036 // regulation of endosome size // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0001726 // ruffle // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from sequence or structural similarity /// 0005769 // early endosome // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0014069 // postsynaptic density // not recorded /// 0016020 // membrane // inferred from direct assay /// 0019717 // synaptosome // inferred from direct assay /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030425 // dendrite // not recorded /// 0030425 // dendrite // inferred from sequence or structural similarity /// 0030425 // dendrite // inferred from electronic annotation /// 0030426 // growth cone // inferred from direct assay /// 0042598 // vesicular fraction // not recorded /// 0042598 // vesicular fraction // inferred from sequence or structural similarity /// 0042598 // vesicular fraction // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043197 // dendritic spine // not recorded /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from sequence or structural similarity /// 0043234 // protein complex // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017112 // Rab guanyl-nucleotide exchange factor activity // not recorded /// 0017112 // Rab guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0017112 // Rab guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0017137 // Rab GTPase binding // not recorded /// 0017137 // Rab GTPase binding // inferred from sequence or structural similarity /// 0017137 // Rab GTPase binding // inferred from electronic annotation /// 0030676 // Rac guanyl-nucleotide exchange factor activity // not recorded /// 0030676 // Rac guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0030676 // Rac guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0043539 // protein serine/threonine kinase activator activity // not recorded /// 0043539 // protein serine/threonine kinase activator activity // inferred from sequence or structural similarity /// 0043539 // protein serine/threonine kinase activator activity // inferred from electronic annotation 1377167_at AA964494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964494 /DB_XREF=gi:4279368 /DB_XREF=UI-R-E1-go-h-07-0-UI.s1 /CLONE=UI-R-E1-go-h-07-0-UI /FEA=EST /CNT=5 /TID=Rn.33567.1 /TIER=ConsEnd /STK=4 /UG=Rn.33567 /UG_TITLE=ESTs AA964494 1377168_at AI412673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412673 /DB_XREF=gi:4256177 /DB_XREF=EST240972 /CLONE=RBRDK32 /FEA=EST /CNT=5 /TID=Rn.35050.1 /TIER=ConsEnd /STK=4 /UG=Rn.35050 /UG_TITLE=ESTs, Weakly similar to CNE6_MOUSE COPINE VI (NEURONAL-COPINE) (N-COPINE) (M.musculus) AI412673 copine family member IX Cpne9 297516 NM_001024982 1377169_at BI273710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI273710 /DB_XREF=gi:14883936 /DB_XREF=UI-R-CW0-bvy-b-09-0-UI.s1 /CLONE=UI-R-CW0-bvy-b-09-0-UI /FEA=EST /CNT=5 /TID=Rn.32682.1 /TIER=ConsEnd /STK=4 /UG=Rn.32682 /UG_TITLE=ESTs, Weakly similar to TRA3 MOUSE TNF RECEPTOR ASSOCIATED FACTOR 3 (M.musculus) BI273710 similar to TNF receptor-associated factor 5 LOC684173 684173 XR_085606 1377170_at AW534159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534159 /DB_XREF=gi:7176573 /DB_XREF=UI-R-C4-alp-h-07-0-UI.s1 /CLONE=UI-R-C4-alp-h-07-0-UI /FEA=EST /CNT=5 /TID=Rn.47501.1 /TIER=ConsEnd /STK=4 /UG=Rn.47501 /UG_TITLE=ESTs AW534159 1377171_at AA875041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875041 /DB_XREF=gi:4230922 /DB_XREF=UI-R-E0-cb-b-03-0-UI.s1 /CLONE=UI-R-E0-cb-b-03-0-UI /FEA=EST /CNT=5 /TID=Rn.3213.1 /TIER=ConsEnd /STK=4 /UG=Rn.3213 /UG_TITLE=ESTs AA875041 leucine zipper, putative tumor suppressor 1 Lzts1 266711 NM_153470 0007049 // cell cycle // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // inferred from mutant phenotype /// 0048167 // regulation of synaptic plasticity // non-traceable author statement /// 0048814 // regulation of dendrite morphogenesis // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from mutant phenotype /// 0030054 // cell junction // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from direct assay /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1377172_at BE117002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117002 /DB_XREF=gi:8509107 /DB_XREF=UI-R-BS1-ayl-f-12-0-UI.s1 /CLONE=UI-R-BS1-ayl-f-12-0-UI /FEA=EST /CNT=5 /TID=Rn.9563.1 /TIER=ConsEnd /STK=4 /UG=Rn.9563 /UG_TITLE=ESTs, Highly similar to LGN_HUMAN MOSAIC PROTEIN LG (H.sapiens) BE117002 G-protein signaling modulator 2 (AGS3-like, C. elegans) Gpsm2 362021 NM_001191962 /// XM_002726048 /// XM_575015 0007165 // signal transduction // inferred from electronic annotation 0005737 // cytoplasm // not recorded 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1377173_at BE104535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104535 /DB_XREF=gi:8496635 /DB_XREF=UI-R-BX0-arq-e-05-0-UI.s1 /CLONE=UI-R-BX0-arq-e-05-0-UI /FEA=EST /CNT=5 /TID=Rn.43539.1 /TIER=ConsEnd /STK=4 /UG=Rn.43539 /UG_TITLE=ESTs BE104535 1377174_at AW434982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434982 /DB_XREF=gi:6966289 /DB_XREF=UI-R-BJ0p-afv-c-05-0-UI.s1 /CLONE=UI-R-BJ0p-afv-c-05-0-UI /FEA=EST /CNT=5 /TID=Rn.48635.1 /TIER=ConsEnd /STK=4 /UG=Rn.48635 /UG_TITLE=ESTs, Weakly similar to MTM1_MOUSE MYOTUBULARIN (M.musculus) AW434982 SET binding factor 1 Sbf1 300147 XM_001054780 /// XM_217021 0007283 // spermatogenesis // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0016791 // phosphatase activity // inferred from electronic annotation 1377175_at BF408588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408588 /DB_XREF=gi:11396563 /DB_XREF=UI-R-BJ2-brf-e-07-0-UI.s1 /CLONE=UI-R-BJ2-brf-e-07-0-UI /FEA=EST /CNT=5 /TID=Rn.19499.1 /TIER=ConsEnd /STK=4 /UG=Rn.19499 /UG_TITLE=ESTs BF408588 1377176_at BG381076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381076 /DB_XREF=gi:13305548 /DB_XREF=UI-R-CT0-bug-h-10-0-UI.s1 /CLONE=UI-R-CT0-bug-h-10-0-UI /FEA=EST /CNT=5 /TID=Rn.16264.1 /TIER=ConsEnd /STK=4 /UG=Rn.16264 /UG_TITLE=ESTs BG381076 cysteine and histidine rich 1 Cyhr1 315097 NM_001025122 0016567 // protein ubiquitination // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377177_at BE099446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099446 /DB_XREF=gi:8491287 /DB_XREF=UI-R-BJ1-atw-b-03-0-UI.s1 /CLONE=UI-R-BJ1-atw-b-03-0-UI /FEA=EST /CNT=5 /TID=Rn.46018.1 /TIER=ConsEnd /STK=4 /UG=Rn.46018 /UG_TITLE=ESTs, Weakly similar to IRX3 MOUSE IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX-3 (M.musculus) BE099446 Iroquois homeobox 1 Irx1 306659 NM_001107331 0001656 // metanephros development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0072086 // specification of loop of Henle identity // not recorded /// 0072272 // proximal/distal pattern formation involved in metanephric nephron development // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1377178_at AA998606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998606 /DB_XREF=gi:4291013 /DB_XREF=UI-R-C0-if-b-05-0-UI.s1 /CLONE=UI-R-C0-if-b-05-0-UI /FEA=EST /CNT=5 /TID=Rn.36053.1 /TIER=ConsEnd /STK=4 /UG=Rn.36053 /UG_TITLE=ESTs AA998606 1377179_at BI283849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283849 /DB_XREF=gi:14935997 /DB_XREF=UI-R-CX0s-ccx-d-11-0-UI.s1 /CLONE=UI-R-CX0s-ccx-d-11-0-UI /FEA=EST /CNT=5 /TID=Rn.41973.1 /TIER=ConsEnd /STK=4 /UG=Rn.41973 /UG_TITLE=ESTs BI283849 PQ loop repeat containing 2 Pqlc2 362642 NM_001108689 1377180_at BF394102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394102 /DB_XREF=gi:11378966 /DB_XREF=UI-R-CA0-bgz-c-09-0-UI.s1 /CLONE=UI-R-CA0-bgz-c-09-0-UI /FEA=EST /CNT=5 /TID=Rn.52408.1 /TIER=ConsEnd /STK=4 /UG=Rn.52408 /UG_TITLE=ESTs BF394102 1377181_at AI502604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502604 /DB_XREF=gi:4400455 /DB_XREF=UI-R-C1-kw-d-07-0-UI.s1 /CLONE=UI-R-C1-kw-d-07-0-UI /FEA=EST /CNT=5 /TID=Rn.27825.1 /TIER=ConsEnd /STK=4 /UG=Rn.27825 /UG_TITLE=ESTs AI502604 1377182_at BM387863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387863 /DB_XREF=gi:18187916 /DB_XREF=UI-R-CN1-cjk-f-21-0-UI.s1 /CLONE=UI-R-CN1-cjk-f-21-0-UI /FEA=EST /CNT=5 /TID=Rn.81.1 /TIER=ConsEnd /STK=4 /UG=Rn.81 /UG_TITLE=ESTs, Weakly similar to A57277 beta-3 endonexin, long splice form (H.sapiens) BM387863 integrin beta 3 binding protein (beta3-endonexin) Itgb3bp 362548 NM_001013213 0006350 // transcription // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded 1377183_at BE098555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098555 /DB_XREF=gi:8490419 /DB_XREF=UI-R-BJ1-asx-c-06-0-UI.s1 /CLONE=UI-R-BJ1-asx-c-06-0-UI /FEA=EST /CNT=5 /TID=Rn.25482.1 /TIER=ConsEnd /STK=4 /UG=Rn.25482 /UG_TITLE=ESTs BE098555 1377184_at AI549231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549231 /DB_XREF=gi:4466719 /DB_XREF=UI-R-C3-tx-b-12-0-UI.s1 /CLONE=UI-R-C3-tx-b-12-0-UI /FEA=EST /CNT=5 /TID=Rn.41444.1 /TIER=ConsEnd /STK=4 /UG=Rn.41444 /UG_TITLE=ESTs AI549231 ELL associated factor 1 Eaf1 306261 NM_001107293 0005515 // protein binding // not recorded 1377185_at BG667451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667451 /DB_XREF=gi:13889373 /DB_XREF=DRACOE08 /CLONE=DRACOE08 /FEA=EST /CNT=5 /TID=Rn.43946.1 /TIER=ConsEnd /STK=4 /UG=Rn.43946 /UG_TITLE=ESTs BG667451 transmembrane protein 229B Tmem229b 503035 NM_001109359 1377186_at BF405017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405017 /DB_XREF=gi:11392992 /DB_XREF=UI-R-CA1-bio-e-06-0-UI.s1 /CLONE=UI-R-CA1-bio-e-06-0-UI /FEA=EST /CNT=4 /TID=Rn.63055.1 /TIER=ConsEnd /STK=4 /UG=Rn.63055 /UG_TITLE=ESTs BF405017 rCG55595-like LOC100361486 100361486 XM_002730049 1377187_at BI291427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291427 /DB_XREF=gi:14950955 /DB_XREF=UI-R-CV2-cgq-b-07-0-UI.s1 /CLONE=UI-R-CV2-cgq-b-07-0-UI /FEA=EST /CNT=4 /TID=Rn.18198.1 /TIER=ConsEnd /STK=4 /UG=Rn.18198 /UG_TITLE=ESTs BI291427 RNA binding motif protein 12B Rbm12b 313069 XM_001053414 /// XM_232819 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1377188_at BI296291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296291 /DB_XREF=gi:14960588 /DB_XREF=UI-R-DK0-cey-f-06-0-UI.s1 /CLONE=UI-R-DK0-cey-f-06-0-UI /FEA=EST /CNT=4 /TID=Rn.63575.1 /TIER=ConsEnd /STK=4 /UG=Rn.63575 /UG_TITLE=ESTs BI296291 1377189_at BI295093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295093 /DB_XREF=gi:14958194 /DB_XREF=UI-R-DK0-cef-g-04-0-UI.s1 /CLONE=UI-R-DK0-cef-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.34772.1 /TIER=ConsEnd /STK=4 /UG=Rn.34772 /UG_TITLE=ESTs BI295093 similar to BC282485_1 RGD1307390 292680 NM_001106229 1377190_at AI010237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010237 /DB_XREF=gi:4133202 /DB_XREF=EST204688 /CLONE=RLUBV61 /FEA=EST /CNT=4 /TID=Rn.12822.1 /TIER=ConsEnd /STK=4 /UG=Rn.12822 /UG_TITLE=ESTs AI010237 1377191_at BI291386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291386 /DB_XREF=gi:14950881 /DB_XREF=UI-R-CV2-cgp-e-03-0-UI.s1 /CLONE=UI-R-CV2-cgp-e-03-0-UI /FEA=EST /CNT=4 /TID=Rn.66347.1 /TIER=ConsEnd /STK=4 /UG=Rn.66347 /UG_TITLE=ESTs, Highly similar to ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit e (Rattus norvegicus) (R.norvegicus) BI291386 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit E Atp5i 140608 NM_080481 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0046034 // ATP metabolic process // inferred from direct assay 0000276 // mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) // inferred from direct assay /// 0000276 // mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005753 // mitochondrial proton-transporting ATP synthase complex // not recorded /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded 1377192_a_at BM384629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384629 /DB_XREF=gi:18184682 /DB_XREF=UI-R-DY0-ckl-d-01-0-UI.s1 /CLONE=UI-R-DY0-ckl-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.18192.1 /TIER=ConsEnd /STK=4 /UG=Rn.18192 /UG_TITLE=ESTs, Highly similar to CLPX_HUMAN PUTATIVE ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX, MITOCHONDRIAL PRECURSOR (H.sapiens) BM384629 ClpX caseinolytic peptidase X homolog (E. coli) Clpx 300786 NM_001007803 0006200 // ATP catabolic process // not recorded /// 0006457 // protein folding // inferred from electronic annotation /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation /// 0051603 // proteolysis involved in cellular protein catabolic process // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0009841 // mitochondrial endopeptidase Clp complex // inferred from electronic annotation /// 0009841 // mitochondrial endopeptidase Clp complex // not recorded /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004176 // ATP-dependent peptidase activity // inferred from electronic annotation /// 0004176 // ATP-dependent peptidase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016504 // peptidase activator activity // inferred from electronic annotation /// 0016504 // peptidase activator activity // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1377193_at BF405021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405021 /DB_XREF=gi:11392996 /DB_XREF=UI-R-CA1-bio-f-03-0-UI.s1 /CLONE=UI-R-CA1-bio-f-03-0-UI /FEA=EST /CNT=4 /TID=Rn.59710.1 /TIER=ConsEnd /STK=4 /UG=Rn.59710 /UG_TITLE=ESTs BF405021 1377194_a_at BE107471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107471 /DB_XREF=gi:8499576 /DB_XREF=UI-R-BS1-ayu-b-02-0-UI.s1 /CLONE=UI-R-BS1-ayu-b-02-0-UI /FEA=EST /CNT=4 /TID=Rn.19570.1 /TIER=ConsEnd /STK=4 /UG=Rn.19570 /UG_TITLE=ESTs BE107471 coiled-coil domain containing 90B Ccdc90b 308820 NM_001024885 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1377195_at BF406252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406252 /DB_XREF=gi:11394227 /DB_XREF=UI-R-CA1-bjf-m-06-0-UI.s1 /CLONE=UI-R-CA1-bjf-m-06-0-UI /FEA=EST /CNT=4 /TID=Rn.59852.1 /TIER=ConsEnd /STK=4 /UG=Rn.59852 /UG_TITLE=ESTs BF406252 1377196_at BI289660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289660 /DB_XREF=gi:14947450 /DB_XREF=UI-R-DK0-cfi-f-05-0-UI.s1 /CLONE=UI-R-DK0-cfi-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.79061.1 /TIER=ConsEnd /STK=4 /UG=Rn.79061 /UG_TITLE=ESTs BI289660 1377197_at BE108892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108892 /DB_XREF=gi:8500997 /DB_XREF=UI-R-BS1-ayz-f-02-0-UI.s1 /CLONE=UI-R-BS1-ayz-f-02-0-UI /FEA=EST /CNT=4 /TID=Rn.20548.1 /TIER=ConsEnd /STK=4 /UG=Rn.20548 /UG_TITLE=ESTs BE108892 1377198_at AA891732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891732 /DB_XREF=gi:4132082 /DB_XREF=EST195535 /CLONE=RKIAG09 /FEA=EST /CNT=4 /TID=Rn.12934.1 /TIER=ConsEnd /STK=4 /UG=Rn.12934 /UG_TITLE=ESTs AA891732 1377199_at BI274530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274530 /DB_XREF=gi:14885517 /DB_XREF=UI-R-CW0-bwj-h-08-0-UI.s1 /CLONE=UI-R-CW0-bwj-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.28654.1 /TIER=ConsEnd /STK=4 /UG=Rn.28654 /UG_TITLE=ESTs BI274530 1377200_at BF400865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400865 /DB_XREF=gi:11388840 /DB_XREF=UI-R-CA0-bhg-g-02-0-UI.s1 /CLONE=UI-R-CA0-bhg-g-02-0-UI /FEA=EST /CNT=4 /TID=Rn.50932.1 /TIER=ConsEnd /STK=4 /UG=Rn.50932 /UG_TITLE=ESTs BF400865 1377201_at BE109156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109156 /DB_XREF=gi:8501261 /DB_XREF=UI-R-BS1-azb-e-11-0-UI.s1 /CLONE=UI-R-BS1-azb-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.46749.1 /TIER=ConsEnd /STK=4 /UG=Rn.46749 /UG_TITLE=ESTs BE109156 1377202_at AI172197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172197 /DB_XREF=gi:4134719 /DB_XREF=EST218193 /CLONE=RMUBW15 /FEA=EST /CNT=4 /TID=Rn.28819.1 /TIER=ConsEnd /STK=4 /UG=Rn.28819 /UG_TITLE=ESTs AI172197 SMC6 structural maintenance of chromosomes 6-like 1 (yeast) Smc6l1 313961 NM_001108014 0005622 // intracellular // not recorded /// 0005694 // chromosome // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation 1377203_at BF393845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393845 /DB_XREF=gi:11378708 /DB_XREF=UI-R-CA0-bgv-f-04-0-UI.s1 /CLONE=UI-R-CA0-bgv-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.58524.1 /TIER=ConsEnd /STK=4 /UG=Rn.58524 /UG_TITLE=ESTs BF393845 1377204_at BM384337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384337 /DB_XREF=gi:18184390 /DB_XREF=UI-R-DY0-ckr-n-06-0-UI.s1 /CLONE=UI-R-DY0-ckr-n-06-0-UI /FEA=EST /CNT=4 /TID=Rn.46810.1 /TIER=ConsEnd /STK=4 /UG=Rn.46810 /UG_TITLE=ESTs BM384337 1377205_at BE107410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107410 /DB_XREF=gi:8499515 /DB_XREF=UI-R-BS1-ayt-d-06-0-UI.s1 /CLONE=UI-R-BS1-ayt-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.49215.1 /TIER=ConsEnd /STK=4 /UG=Rn.49215 /UG_TITLE=ESTs, Highly similar to T14778 hypothetical protein DKFZp434P101.1 (H.sapiens) BE107410 similar to KIAA0892 protein RGD1308759 290668 NM_001106077 0034088 // maintenance of mitotic sister chromatid cohesion // not recorded 0000785 // chromatin // not recorded /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0032116 // cohesin loading complex // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0047485 // protein N-terminus binding // not recorded 1377206_at BI282093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282093 /DB_XREF=gi:14932495 /DB_XREF=UI-R-CU0s-cbw-e-02-0-UI.s1 /CLONE=UI-R-CU0s-cbw-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.49641.1 /TIER=ConsEnd /STK=4 /UG=Rn.49641 /UG_TITLE=ESTs, Highly similar to LHX1 MOUSE LIMHOMEOBOX PROTEIN LHX1 (R.norvegicus) BI282093 LIM homeobox 1 Lhx1 257634 NM_145880 0001655 // urogenital system development // inferred from electronic annotation /// 0001655 // urogenital system development // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // not recorded /// 0001705 // ectoderm formation // inferred from electronic annotation /// 0001705 // ectoderm formation // not recorded /// 0001706 // endoderm formation // inferred from electronic annotation /// 0001706 // endoderm formation // not recorded /// 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // not recorded /// 0009653 // anatomical structure morphogenesis // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0009880 // embryonic pattern specification // inferred from electronic annotation /// 0009880 // embryonic pattern specification // not recorded /// 0009948 // anterior/posterior axis specification // inferred from electronic annotation /// 0009948 // anterior/posterior axis specification // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0021549 // cerebellum development // inferred from electronic annotation /// 0021549 // cerebellum development // not recorded /// 0021702 // cerebellar Purkinje cell differentiation // inferred from electronic annotation /// 0021702 // cerebellar Purkinje cell differentiation // not recorded /// 0021871 // forebrain regionalization // inferred from electronic annotation /// 0021871 // forebrain regionalization // not recorded /// 0021937 // cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation // inferred from electronic annotation /// 0021937 // cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048646 // anatomical structure formation involved in morphogenesis // inferred from electronic annotation /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded /// 0060322 // head development // inferred from electronic annotation /// 0060322 // head development // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377207_at BF404972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404972 /DB_XREF=gi:11392947 /DB_XREF=UI-R-CA1-bij-h-07-0-UI.s1 /CLONE=UI-R-CA1-bij-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.62376.1 /TIER=ConsEnd /STK=4 /UG=Rn.62376 /UG_TITLE=ESTs BF404972 1377208_at BI291457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291457 /DB_XREF=gi:14951017 /DB_XREF=UI-R-CV2-cgq-e-07-0-UI.s1 /CLONE=UI-R-CV2-cgq-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.66987.1 /TIER=ConsEnd /STK=4 /UG=Rn.66987 /UG_TITLE=ESTs BI291457 1377209_at BI283664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283664 /DB_XREF=gi:14935638 /DB_XREF=UI-R-CW0s-ccg-c-05-0-UI.s1 /CLONE=UI-R-CW0s-ccg-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.16545.1 /TIER=ConsEnd /STK=4 /UG=Rn.16545 /UG_TITLE=ESTs BI283664 kelch-like 25 (Drosophila) Klhl25 293023 NM_001039006 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation 1377210_at AI170295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170295 /DB_XREF=gi:3710335 /DB_XREF=EST216221 /CLONE=RLUCG61 /FEA=EST /CNT=4 /TID=Rn.28380.1 /TIER=ConsEnd /STK=4 /UG=Rn.28380 /UG_TITLE=ESTs AI170295 1377211_at BI279696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279696 /DB_XREF=gi:14927755 /DB_XREF=UI-R-DE0-caf-f-05-0-UI.s1 /CLONE=UI-R-DE0-caf-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.40239.1 /TIER=ConsEnd /STK=4 /UG=Rn.40239 /UG_TITLE=ESTs BI279696 Similar to LEYDIG CELL TUMOR 10 KD PROTEIN LOC288913 288913 NM_198728 1377212_at BF416289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416289 /DB_XREF=gi:11404278 /DB_XREF=UI-R-CA0-bkr-g-01-0-UI.s1 /CLONE=UI-R-CA0-bkr-g-01-0-UI /FEA=EST /CNT=4 /TID=Rn.62985.1 /TIER=ConsEnd /STK=4 /UG=Rn.62985 /UG_TITLE=ESTs BF416289 1377213_at BI280353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280353 /DB_XREF=gi:14929053 /DB_XREF=UI-R-DE0-cag-h-12-0-UI.s1 /CLONE=UI-R-DE0-cag-h-12-0-UI /FEA=EST /CNT=4 /TID=Rn.14645.1 /TIER=ConsEnd /STK=4 /UG=Rn.14645 /UG_TITLE=ESTs BI280353 1377214_a_at BF405050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405050 /DB_XREF=gi:11393025 /DB_XREF=UI-R-CA1-bip-a-06-0-UI.s1 /CLONE=UI-R-CA1-bip-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.12517.1 /TIER=ConsEnd /STK=4 /UG=Rn.12517 /UG_TITLE=ESTs, Weakly similar to T08675 hypothetical protein DKFZp564F0522.1 (H.sapiens) BF405050 hypothetical protein LOC292764 RGD1303117 292764 NM_001004219 /// NM_001198584 /// NR_037147 1377215_at BF403845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403845 /DB_XREF=gi:11391820 /DB_XREF=UI-R-CA1-bix-j-11-0-UI.s1 /CLONE=UI-R-CA1-bix-j-11-0-UI /FEA=EST /CNT=4 /TID=Rn.59816.1 /TIER=ConsEnd /STK=4 /UG=Rn.59816 /UG_TITLE=ESTs BF403845 1377216_at BI295997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295997 /DB_XREF=gi:14960001 /DB_XREF=UI-R-DK0-cfd-b-11-0-UI.s1 /CLONE=UI-R-DK0-cfd-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.33757.1 /TIER=ConsEnd /STK=4 /UG=Rn.33757 /UG_TITLE=ESTs BI295997 1377217_at BF399390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399390 /DB_XREF=gi:11384394 /DB_XREF=UI-R-CA1-bjb-o-10-0-UI.s1 /CLONE=UI-R-CA1-bjb-o-10-0-UI /FEA=EST /CNT=4 /TID=Rn.47217.1 /TIER=ConsEnd /STK=4 /UG=Rn.47217 /UG_TITLE=ESTs BF399390 1377218_at BF414000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414000 /DB_XREF=gi:11401989 /DB_XREF=UI-R-BJ2-bol-c-06-0-UI.s1 /CLONE=UI-R-BJ2-bol-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.41671.1 /TIER=ConsEnd /STK=4 /UG=Rn.41671 /UG_TITLE=ESTs BF414000 1377219_at BE113039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113039 /DB_XREF=gi:8505144 /DB_XREF=UI-R-BJ1-awf-f-09-0-UI.s1 /CLONE=UI-R-BJ1-awf-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.49075.1 /TIER=ConsEnd /STK=4 /UG=Rn.49075 /UG_TITLE=ESTs BE113039 1377220_at BI296738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296738 /DB_XREF=gi:14961465 /DB_XREF=UI-R-CV2-cgv-g-02-0-UI.s1 /CLONE=UI-R-CV2-cgv-g-02-0-UI /FEA=EST /CNT=4 /TID=Rn.67038.1 /TIER=ConsEnd /STK=4 /UG=Rn.67038 /UG_TITLE=ESTs BI296738 1377221_at AI411226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411226 /DB_XREF=gi:4254730 /DB_XREF=EST239520 /CLONE=RKIER69 /FEA=EST /CNT=4 /TID=Rn.18440.1 /TIER=ConsEnd /STK=4 /UG=Rn.18440 /UG_TITLE=ESTs AI411226 1377222_at BF400700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400700 /DB_XREF=gi:11388675 /DB_XREF=UI-R-CA0-bhe-d-12-0-UI.s1 /CLONE=UI-R-CA0-bhe-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.57269.1 /TIER=ConsEnd /STK=4 /UG=Rn.57269 /UG_TITLE=ESTs BF400700 1377223_at AI599621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599621 /DB_XREF=gi:4608669 /DB_XREF=EST251324 /CLONE=REMEH36 /FEA=EST /CNT=4 /TID=Rn.14977.1 /TIER=ConsEnd /STK=4 /UG=Rn.14977 /UG_TITLE=ESTs AI599621 Wilms tumor 1 Wt1 24883 NM_031534 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001656 // metanephros development // inferred from electronic annotation /// 0001656 // metanephros development // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001822 // kidney development // not recorded /// 0001822 // kidney development // inferred from electronic annotation /// 0001823 // mesonephros development // inferred from electronic annotation /// 0001823 // mesonephros development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0007281 // germ cell development // inferred from electronic annotation /// 0007281 // germ cell development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007530 // sex determination // inferred from electronic annotation /// 0007530 // sex determination // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0008584 // male gonad development // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0009888 // tissue development // inferred from electronic annotation /// 0009888 // tissue development // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0017148 // negative regulation of translation // not recorded /// 0030308 // negative regulation of cell growth // not recorded /// 0030308 // negative regulation of cell growth // inferred from sequence or structural similarity /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030325 // adrenal gland development // inferred from electronic annotation /// 0030325 // adrenal gland development // not recorded /// 0030539 // male genitalia development // inferred from electronic annotation /// 0030539 // male genitalia development // not recorded /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0032582 // negative regulation of gene-specific transcription // inferred from sequence or structural similarity /// 0032582 // negative regulation of gene-specific transcription // inferred from electronic annotation /// 0032835 // glomerulus development // not recorded /// 0032835 // glomerulus development // inferred from electronic annotation /// 0032836 // glomerular basement membrane development // not recorded /// 0032836 // glomerular basement membrane development // inferred from sequence or structural similarity /// 0032836 // glomerular basement membrane development // inferred from electronic annotation /// 0043010 // camera-type eye development // inferred from electronic annotation /// 0043010 // camera-type eye development // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from sequence or structural similarity /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0060231 // mesenchymal to epithelial transition // inferred from electronic annotation /// 0060231 // mesenchymal to epithelial transition // not recorded /// 0061032 // visceral serous pericardium development // not recorded /// 0072112 // glomerular visceral epithelial cell differentiation // not recorded /// 0072284 // metanephric S-shaped body morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016607 // nuclear speck // not recorded /// 0016607 // nuclear speck // inferred from sequence or structural similarity /// 0016607 // nuclear speck // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from sequence or structural similarity /// 0010843 // promoter binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // not recorded /// 0016566 // specific transcriptional repressor activity // inferred from sequence or structural similarity /// 0016566 // specific transcriptional repressor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070742 // C2H2 zinc finger domain binding // not recorded /// 0070742 // C2H2 zinc finger domain binding // inferred from sequence or structural similarity /// 0070742 // C2H2 zinc finger domain binding // inferred from electronic annotation 1377224_at BM391851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391851 /DB_XREF=gi:18191904 /DB_XREF=UI-R-DO1-cmk-h-16-0-UI.s1 /CLONE=UI-R-DO1-cmk-h-16-0-UI /FEA=EST /CNT=4 /TID=Rn.40190.1 /TIER=ConsEnd /STK=4 /UG=Rn.40190 /UG_TITLE=ESTs BM391851 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor Taf1 317256 NM_001191723 /// XM_001061884 /// XM_228551 0000080 // G1 phase of mitotic cell cycle // not recorded /// 0006352 // transcription initiation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016573 // histone acetylation // not recorded /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0018107 // peptidyl-threonine phosphorylation // not recorded /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046777 // protein autophosphorylation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005669 // transcription factor TFIID complex // inferred from electronic annotation /// 0005669 // transcription factor TFIID complex // not recorded /// 0005730 // nucleolus // not recorded /// 0045120 // pronucleus // not recorded /// 0071339 // MLL1 complex // not recorded 0002039 // p53 binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003713 // transcription coactivator activity // not recorded /// 0004402 // histone acetyltransferase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0017025 // TATA-binding protein binding // not recorded /// 0070577 // histone acetyl-lysine binding // not recorded 1377225_at BF400628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400628 /DB_XREF=gi:11388603 /DB_XREF=UI-R-CA0-bhd-f-05-0-UI.s1 /CLONE=UI-R-CA0-bhd-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.63470.1 /TIER=ConsEnd /STK=4 /UG=Rn.63470 /UG_TITLE=ESTs BF400628 1377226_at BE107326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107326 /DB_XREF=gi:8499431 /DB_XREF=UI-R-BS1-ays-e-01-0-UI.s1 /CLONE=UI-R-BS1-ays-e-01-0-UI /FEA=EST /CNT=4 /TID=Rn.50653.1 /TIER=ConsEnd /STK=4 /UG=Rn.50653 /UG_TITLE=ESTs BE107326 1377227_at BG378045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378045 /DB_XREF=gi:13302517 /DB_XREF=UI-R-CT0-bvn-b-12-0-UI.s1 /CLONE=UI-R-CT0-bvn-b-12-0-UI /FEA=EST /CNT=4 /TID=Rn.23614.1 /TIER=ConsEnd /STK=4 /UG=Rn.23614 /UG_TITLE=ESTs BG378045 1377228_at BF411981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411981 /DB_XREF=gi:11399970 /DB_XREF=UI-R-BT1-bmx-h-10-0-UI.s1 /CLONE=UI-R-BT1-bmx-h-10-0-UI /FEA=EST /CNT=4 /TID=Rn.50164.1 /TIER=ConsEnd /STK=4 /UG=Rn.50164 /UG_TITLE=ESTs BF411981 1377229_at BF394058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394058 /DB_XREF=gi:11378922 /DB_XREF=UI-R-CA0-bgy-e-02-0-UI.s1 /CLONE=UI-R-CA0-bgy-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.52466.1 /TIER=ConsEnd /STK=4 /UG=Rn.52466 /UG_TITLE=ESTs BF394058 1377230_at BE113656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113656 /DB_XREF=gi:8505761 /DB_XREF=UI-R-BJ1-awg-g-11-0-UI.s1 /CLONE=UI-R-BJ1-awg-g-11-0-UI /FEA=EST /CNT=4 /TID=Rn.19492.1 /TIER=ConsEnd /STK=4 /UG=Rn.19492 /UG_TITLE=ESTs, Weakly similar to TBX2 PROTEIN (M.musculus) BE113656 T-box 3 Tbx3 353305 NM_181638 0001501 // skeletal system development // not recorded /// 0001501 // skeletal system development // inferred from sequence or structural similarity /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001947 // heart looping // inferred from electronic annotation /// 0001947 // heart looping // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from sequence or structural similarity /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007569 // cell aging // not recorded /// 0007569 // cell aging // inferred from sequence or structural similarity /// 0007569 // cell aging // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008595 // anterior/posterior axis specification, embryo // not recorded /// 0008595 // anterior/posterior axis specification, embryo // inferred from sequence or structural similarity /// 0008595 // anterior/posterior axis specification, embryo // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010159 // specification of organ position // inferred from electronic annotation /// 0010159 // specification of organ position // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0021761 // limbic system development // inferred from electronic annotation /// 0021761 // limbic system development // not recorded /// 0030539 // male genitalia development // not recorded /// 0030539 // male genitalia development // inferred from sequence or structural similarity /// 0030539 // male genitalia development // inferred from electronic annotation /// 0030540 // female genitalia development // not recorded /// 0030540 // female genitalia development // inferred from sequence or structural similarity /// 0030540 // female genitalia development // inferred from electronic annotation /// 0030879 // mammary gland development // not recorded /// 0030879 // mammary gland development // inferred from sequence or structural similarity /// 0030879 // mammary gland development // inferred from electronic annotation /// 0032275 // luteinizing hormone secretion // not recorded /// 0032275 // luteinizing hormone secretion // inferred from sequence or structural similarity /// 0032275 // luteinizing hormone secretion // inferred from electronic annotation /// 0035108 // limb morphogenesis // not recorded /// 0035108 // limb morphogenesis // inferred from electronic annotation /// 0035117 // embryonic arm morphogenesis // not recorded /// 0035117 // embryonic arm morphogenesis // inferred from sequence or structural similarity /// 0035117 // embryonic arm morphogenesis // inferred from electronic annotation /// 0035136 // forelimb morphogenesis // inferred from electronic annotation /// 0035136 // forelimb morphogenesis // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // not recorded /// 0042733 // embryonic digit morphogenesis // inferred from sequence or structural similarity /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045662 // negative regulation of myoblast differentiation // not recorded /// 0045662 // negative regulation of myoblast differentiation // inferred from sequence or structural similarity /// 0045662 // negative regulation of myoblast differentiation // inferred from electronic annotation /// 0045787 // positive regulation of cell cycle // not recorded /// 0045787 // positive regulation of cell cycle // inferred from sequence or structural similarity /// 0045787 // positive regulation of cell cycle // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0046884 // follicle-stimulating hormone secretion // not recorded /// 0046884 // follicle-stimulating hormone secretion // inferred from sequence or structural similarity /// 0046884 // follicle-stimulating hormone secretion // inferred from electronic annotation /// 0048332 // mesoderm morphogenesis // not recorded /// 0048332 // mesoderm morphogenesis // inferred from sequence or structural similarity /// 0048332 // mesoderm morphogenesis // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // not recorded /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060444 // branching involved in mammary gland duct morphogenesis // not recorded /// 0060596 // mammary placode formation // inferred from electronic annotation /// 0060596 // mammary placode formation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016565 // general transcriptional repressor activity // not recorded /// 0016565 // general transcriptional repressor activity // inferred from sequence or structural similarity /// 0016565 // general transcriptional repressor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1377231_at BF412078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412078 /DB_XREF=gi:11400067 /DB_XREF=UI-R-BT1-bmy-d-02-0-UI.s1 /CLONE=UI-R-BT1-bmy-d-02-0-UI /FEA=EST /CNT=4 /TID=Rn.61995.1 /TIER=ConsEnd /STK=4 /UG=Rn.61995 /UG_TITLE=ESTs BF412078 1377232_at BF406608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406608 /DB_XREF=gi:11394583 /DB_XREF=UI-R-BJ2-bpv-a-10-0-UI.s1 /CLONE=UI-R-BJ2-bpv-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.35613.1 /TIER=ConsEnd /STK=4 /UG=Rn.35613 /UG_TITLE=ESTs BF406608 1377233_at BF400740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400740 /DB_XREF=gi:11388715 /DB_XREF=UI-R-CA0-bhe-h-12-0-UI.s1 /CLONE=UI-R-CA0-bhe-h-12-0-UI /FEA=EST /CNT=4 /TID=Rn.61497.1 /TIER=ConsEnd /STK=4 /UG=Rn.61497 /UG_TITLE=ESTs BF400740 1377234_at BI294862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294862 /DB_XREF=gi:14957730 /DB_XREF=UI-R-DK0-ced-a-05-0-UI.s1 /CLONE=UI-R-DK0-ced-a-05-0-UI /FEA=EST /CNT=4 /TID=Rn.38625.1 /TIER=ConsEnd /STK=4 /UG=Rn.38625 /UG_TITLE=ESTs BI294862 1377235_a_at BI281643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281643 /DB_XREF=gi:14931580 /DB_XREF=UI-R-CT0s-cau-g-07-0-UI.s1 /CLONE=UI-R-CT0s-cau-g-07-0-UI /FEA=EST /CNT=4 /TID=Rn.40996.1 /TIER=ConsEnd /STK=4 /UG=Rn.40996 /UG_TITLE=ESTs, Moderately similar to 2201437B phospholipase 2A:SUBUNIT=regulatory:ISOTYPE=beta (H.sapiens) BI281643 protein phosphatase 2, regulatory subunit B', beta isoform Ppp2r5b 309179 NM_181379 0007165 // signal transduction // inferred from electronic annotation 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008601 // protein phosphatase type 2A regulator activity // inferred from electronic annotation 1377236_at BF405622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405622 /DB_XREF=gi:11393597 /DB_XREF=UI-R-CA1-bix-m-18-0-UI.s1 /CLONE=UI-R-CA1-bix-m-18-0-UI /FEA=EST /CNT=4 /TID=Rn.29340.1 /TIER=ConsEnd /STK=4 /UG=Rn.29340 /UG_TITLE=ESTs BF405622 1377237_at AI137274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137274 /DB_XREF=gi:3638051 /DB_XREF=UI-R-C2p-ok-g-05-0-UI.s1 /CLONE=UI-R-C2p-ok-g-05-0-UI /FEA=EST /CNT=4 /TID=Rn.23759.1 /TIER=ConsEnd /STK=4 /UG=Rn.23759 /UG_TITLE=ESTs AI137274 1377238_at BM386889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386889 /DB_XREF=gi:18186942 /DB_XREF=UI-R-CN1-cjh-f-24-0-UI.s1 /CLONE=UI-R-CN1-cjh-f-24-0-UI /FEA=EST /CNT=4 /TID=Rn.46229.1 /TIER=ConsEnd /STK=4 /UG=Rn.46229 /UG_TITLE=ESTs BM386889 1377239_at BM386169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386169 /DB_XREF=gi:18186222 /DB_XREF=UI-R-CN1-cjf-k-17-0-UI.s1 /CLONE=UI-R-CN1-cjf-k-17-0-UI /FEA=EST /CNT=4 /TID=Rn.34248.1 /TIER=ConsEnd /STK=4 /UG=Rn.34248 /UG_TITLE=ESTs BM386169 amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein Apbb1ip 307171 NM_001100577 0007165 // signal transduction // inferred from electronic annotation 0005829 // cytosol // not recorded 1377240_at AW526305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526305 /DB_XREF=gi:7168690 /DB_XREF=UI-R-BO1-aja-e-03-0-UI.s1 /CLONE=UI-R-BO1-aja-e-03-0-UI /FEA=EST /CNT=4 /TID=Rn.46159.1 /TIER=ConsEnd /STK=4 /UG=Rn.46159 /UG_TITLE=ESTs AW526305 1377241_at AI600276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600276 /DB_XREF=gi:4609324 /DB_XREF=EST251979 /CLONE=REMEQ94 /FEA=EST /CNT=4 /TID=Rn.37928.1 /TIER=ConsEnd /STK=4 /UG=Rn.37928 /UG_TITLE=ESTs, Weakly similar to LORI_HUMAN LORICRI (H.sapiens) AI600276 zinc finger protein 503 Znf503 305687 NM_001107250 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1377242_at BF400656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400656 /DB_XREF=gi:11388631 /DB_XREF=UI-R-CA0-bhd-h-10-0-UI.s1 /CLONE=UI-R-CA0-bhd-h-10-0-UI /FEA=EST /CNT=4 /TID=Rn.28275.1 /TIER=ConsEnd /STK=4 /UG=Rn.28275 /UG_TITLE=ESTs BF400656 1377243_at AI172211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172211 /DB_XREF=gi:3712251 /DB_XREF=EST218208 /CLONE=RMUBW31 /FEA=EST /CNT=4 /TID=Rn.23383.1 /TIER=ConsEnd /STK=4 /UG=Rn.23383 /UG_TITLE=ESTs AI172211 1377244_at BM390979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390979 /DB_XREF=gi:18191032 /DB_XREF=UI-R-CN1-cjm-g-09-0-UI.s1 /CLONE=UI-R-CN1-cjm-g-09-0-UI /FEA=EST /CNT=4 /TID=Rn.38399.1 /TIER=ConsEnd /STK=4 /UG=Rn.38399 /UG_TITLE=ESTs BM390979 zinc finger with KRAB and SCAN domains 5 Zkscan5 304275 NM_001107119 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1377245_a_at AI146147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146147 /DB_XREF=gi:3667946 /DB_XREF=UI-R-BT0-qb-a-05-0-UI.s1 /CLONE=UI-R-BT0-qb-a-05-0-UI /FEA=EST /CNT=4 /TID=Rn.36574.1 /TIER=ConsEnd /STK=4 /UG=Rn.36574 /UG_TITLE=ESTs AI146147 hypothetical protein LOC100360419 /// similar to KIAA1731 protein LOC100360419 /// RGD1311723 100360419 /// 363018 XM_001069542 /// XM_002729872 /// XM_343351 1377246_at BI282860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282860 /DB_XREF=gi:14934043 /DB_XREF=UI-R-CW0s-ccc-c-04-0-UI.s1 /CLONE=UI-R-CW0s-ccc-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.56975.1 /TIER=ConsEnd /STK=4 /UG=Rn.56975 /UG_TITLE=ESTs BI282860 1377247_at BI296714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296714 /DB_XREF=gi:14961417 /DB_XREF=UI-R-CV2-cgv-e-02-0-UI.s1 /CLONE=UI-R-CV2-cgv-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.66976.1 /TIER=ConsEnd /STK=4 /UG=Rn.66976 /UG_TITLE=ESTs BI296714 1377248_at AI227922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227922 /DB_XREF=gi:4135295 /DB_XREF=EST224617 /CLONE=RBRCN64 /FEA=EST /CNT=4 /TID=Rn.38774.1 /TIER=ConsEnd /STK=4 /UG=Rn.38774 /UG_TITLE=ESTs, Weakly similar to RENAL TRANSCRIPTION FACTOR KID-1 (R.norvegicus) AI227922 Zinc finger protein 324 Zfp324 365192 XM_001055374 /// XM_344862 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377249_at AW526060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526060 /DB_XREF=gi:7168445 /DB_XREF=UI-R-BO1-aiy-g-08-0-UI.s1 /CLONE=UI-R-BO1-aiy-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.45722.1 /TIER=ConsEnd /STK=4 /UG=Rn.45722 /UG_TITLE=ESTs, Weakly similar to ELONGATION FACTOR 1-ALPHA 2 (R.norvegicus) AW526060 G1 to S phase transition 2 Gspt2 501582 NM_001109319 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1377250_at AI407325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407325 /DB_XREF=gi:4250829 /DB_XREF=EST235613 /CLONE=ROVED75 /FEA=EST /CNT=4 /TID=Rn.12282.1 /TIER=ConsEnd /STK=4 /UG=Rn.12282 /UG_TITLE=ESTs AI407325 family with sequence similarity 53, member B Fam53b 309060 NM_001107556 1377251_at AW251255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251255 /DB_XREF=gi:6594846 /DB_XREF=UI-R-BJ0-adg-a-07-0-UI.s1 /CLONE=UI-R-BJ0-adg-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.44701.1 /TIER=ConsEnd /STK=4 /UG=Rn.44701 /UG_TITLE=ESTs AW251255 1377252_at BF411321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411321 /DB_XREF=gi:11399303 /DB_XREF=UI-R-CN0-bmj-a-09-0-UI.s1 /CLONE=UI-R-CN0-bmj-a-09-0-UI /FEA=EST /CNT=4 /TID=Rn.45630.1 /TIER=ConsEnd /STK=4 /UG=Rn.45630 /UG_TITLE=ESTs BF411321 similar to RIKEN cDNA 1200011M11 RGD1306862 287596 XM_001081151 /// XM_213430 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // not recorded /// 0045859 // regulation of protein kinase activity // not recorded 0005515 // protein binding // not recorded 1377253_at BG374305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374305 /DB_XREF=gi:13298777 /DB_XREF=UI-R-CV1-bsn-g-09-0-UI.s1 /CLONE=UI-R-CV1-bsn-g-09-0-UI /FEA=EST /CNT=4 /TID=Rn.66204.1 /TIER=ConsEnd /STK=4 /UG=Rn.66204 /UG_TITLE=ESTs BG374305 1377254_a_at BI295640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295640 /DB_XREF=gi:14959291 /DB_XREF=UI-R-DK0-cek.1-g-06-0-UI.s2 /CLONE=UI-R-DK0-cek.1-g-06-0-UI /FEA=EST /CNT=4 /TID=Rn.7442.1 /TIER=ConsEnd /STK=4 /UG=Rn.7442 /UG_TITLE=ESTs, Moderately similar to T00070 hypothetical protein KIAA0532 (H.sapiens) BI295640 vacuolar protein sorting 13 homolog B (yeast) Vps13b 315036 NM_001134886 0008104 // protein localization // inferred from electronic annotation 1377255_at AI410434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410434 /DB_XREF=gi:4253938 /DB_XREF=EST238727 /CLONE=RHECS76 /FEA=EST /CNT=4 /TID=Rn.28290.1 /TIER=ConsEnd /STK=4 /UG=Rn.28290 /UG_TITLE=ESTs AI410434 1377256_at BG380135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380135 /DB_XREF=gi:13304607 /DB_XREF=UI-R-CS0-btp-d-12-0-UI.s1 /CLONE=UI-R-CS0-btp-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.66724.1 /TIER=ConsEnd /STK=4 /UG=Rn.66724 /UG_TITLE=ESTs BG380135 1377257_at BI290077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290077 /DB_XREF=gi:14948306 /DB_XREF=UI-R-DK0-cfr-e-10-0-UI.s1 /CLONE=UI-R-DK0-cfr-e-10-0-UI /FEA=EST /CNT=4 /TID=Rn.35469.1 /TIER=ConsEnd /STK=4 /UG=Rn.35469 /UG_TITLE=ESTs BI290077 1377258_at BE107204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107204 /DB_XREF=gi:8499309 /DB_XREF=UI-R-BS1-ayr-a-12-0-UI.s1 /CLONE=UI-R-BS1-ayr-a-12-0-UI /FEA=EST /CNT=4 /TID=Rn.44907.1 /TIER=ConsEnd /STK=4 /UG=Rn.44907 /UG_TITLE=ESTs BE107204 1377259_at BE116379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116379 /DB_XREF=gi:8508484 /DB_XREF=UI-R-BS1-ayc-e-11-0-UI.s1 /CLONE=UI-R-BS1-ayc-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.52511.1 /TIER=ConsEnd /STK=4 /UG=Rn.52511 /UG_TITLE=ESTs BE116379 1377260_at AI170292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170292 /DB_XREF=gi:3710332 /DB_XREF=EST216218 /CLONE=RLUCG57 /FEA=EST /CNT=4 /TID=Rn.19097.1 /TIER=ConsEnd /STK=4 /UG=Rn.19097 /UG_TITLE=ESTs AI170292 1377261_at BE105858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105858 /DB_XREF=gi:8497960 /DB_XREF=UI-R-BO1-asj-a-09-0-UI.s1 /CLONE=UI-R-BO1-asj-a-09-0-UI /FEA=EST /CNT=4 /TID=Rn.50824.1 /TIER=ConsEnd /STK=4 /UG=Rn.50824 /UG_TITLE=ESTs BE105858 1377262_at BI291600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291600 /DB_XREF=gi:14951296 /DB_XREF=UI-R-DN0-ciu-b-21-0-UI.s1 /CLONE=UI-R-DN0-ciu-b-21-0-UI /FEA=EST /CNT=4 /TID=Rn.52722.1 /TIER=ConsEnd /STK=4 /UG=Rn.52722 /UG_TITLE=ESTs BI291600 SMEK homolog 2, suppressor of mek1 (Dictyostelium) Smek2 360993 NM_001108367 0019216 // regulation of lipid metabolic process // inferred from mutant phenotype 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1377263_at BF399036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399036 /DB_XREF=gi:11384045 /DB_XREF=UI-R-CA1-bja-f-11-0-UI.s1 /CLONE=UI-R-CA1-bja-f-11-0-UI /FEA=EST /CNT=4 /TID=Rn.16621.1 /TIER=ConsEnd /STK=4 /UG=Rn.16621 /UG_TITLE=ESTs, Highly similar to hMed7 (H.sapiens) BF399036 1377264_at BI288683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288683 /DB_XREF=gi:14945508 /DB_XREF=UI-R-DK0-cdd-g-02-0-UI.s1 /CLONE=UI-R-DK0-cdd-g-02-0-UI /FEA=EST /CNT=4 /TID=Rn.34022.1 /TIER=ConsEnd /STK=4 /UG=Rn.34022 /UG_TITLE=ESTs BI288683 interleukin 17F Il17f 301291 NM_001015011 0006029 // proteoglycan metabolic process // inferred from electronic annotation /// 0006029 // proteoglycan metabolic process // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // not recorded /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0042089 // cytokine biosynthetic process // not recorded /// 0042089 // cytokine biosynthetic process // inferred from electronic annotation /// 0042109 // lymphotoxin A biosynthetic process // inferred from electronic annotation /// 0042109 // lymphotoxin A biosynthetic process // not recorded /// 0045076 // regulation of interleukin-2 biosynthetic process // inferred from electronic annotation /// 0045076 // regulation of interleukin-2 biosynthetic process // not recorded /// 0045408 // regulation of interleukin-6 biosynthetic process // inferred from electronic annotation /// 0045408 // regulation of interleukin-6 biosynthetic process // not recorded /// 0045414 // regulation of interleukin-8 biosynthetic process // inferred from electronic annotation /// 0045414 // regulation of interleukin-8 biosynthetic process // not recorded /// 0045423 // regulation of granulocyte macrophage colony-stimulating factor biosynthetic process // inferred from electronic annotation /// 0045423 // regulation of granulocyte macrophage colony-stimulating factor biosynthetic process // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0051216 // cartilage development // inferred from electronic annotation /// 0051216 // cartilage development // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0019955 // cytokine binding // inferred from electronic annotation /// 0019955 // cytokine binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1377265_at BF409441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409441 /DB_XREF=gi:11397380 /DB_XREF=UI-R-CA1-blf-f-08-0-UI.s1 /CLONE=UI-R-CA1-blf-f-08-0-UI /FEA=EST /CNT=4 /TID=Rn.64326.1 /TIER=ConsEnd /STK=4 /UG=Rn.64326 /UG_TITLE=ESTs BF409441 Holocytochrome c synthetase Hccs 317444 NM_001191732 /// XM_001065465 /// XM_228867 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0004408 // holocytochrome-c synthase activity // inferred from electronic annotation 1377266_at AI071674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071674 /DB_XREF=gi:3397889 /DB_XREF=UI-R-C1-ku-e-12-0-UI.s2 /CLONE=UI-R-C1-ku-e-12-0-UI /FEA=EST /CNT=4 /TID=Rn.20599.1 /TIER=ConsEnd /STK=4 /UG=Rn.20599 /UG_TITLE=ESTs AI071674 1377267_at BF402385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402385 /DB_XREF=gi:11390360 /DB_XREF=UI-R-CA0-bhn-f-03-0-UI.s1 /CLONE=UI-R-CA0-bhn-f-03-0-UI /FEA=EST /CNT=4 /TID=Rn.38053.1 /TIER=ConsEnd /STK=4 /UG=Rn.38053 /UG_TITLE=ESTs, Weakly similar to NECDIN (M.musculus) BF402385 melanoma antigen, family E, 1 Magee1 317232 NM_001079891 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016010 // dystrophin-associated glycoprotein complex // inferred from electronic annotation /// 0016010 // dystrophin-associated glycoprotein complex // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0045211 // postsynaptic membrane // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1377268_at BM390418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390418 /DB_XREF=gi:18190471 /DB_XREF=UI-R-CN1-cjq-n-15-0-UI.s1 /CLONE=UI-R-CN1-cjq-n-15-0-UI /FEA=EST /CNT=4 /TID=Rn.41942.1 /TIER=ConsEnd /STK=4 /UG=Rn.41942 /UG_TITLE=ESTs BM390418 similar to RIKEN cDNA 1200014M14 RGD1310597 294667 NM_001025647 0007049 // cell cycle // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005814 // centriole // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1377269_at BI288720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288720 /DB_XREF=gi:14945579 /DB_XREF=UI-R-DK0-cde-b-09-0-UI.s1 /CLONE=UI-R-DK0-cde-b-09-0-UI /FEA=EST /CNT=4 /TID=Rn.64323.1 /TIER=ConsEnd /STK=4 /UG=Rn.64323 /UG_TITLE=ESTs BI288720 1377270_a_at BF396493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396493 /DB_XREF=gi:11381467 /DB_XREF=UI-R-BS2-bdy-g-08-0-UI.s1 /CLONE=UI-R-BS2-bdy-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.16623.1 /TIER=ConsEnd /STK=4 /UG=Rn.16623 /UG_TITLE=ESTs BF396493 DCP1 decapping enzyme homolog b (S. cerevisiae) Dcp1b 500305 XM_001057512 /// XM_575654 0005515 // protein binding // not recorded 1377271_at BF390686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390686 /DB_XREF=gi:11375533 /DB_XREF=UI-R-CA1-bco-b-05-0-UI.s1 /CLONE=UI-R-CA1-bco-b-05-0-UI /FEA=EST /CNT=4 /TID=Rn.61093.1 /TIER=ConsEnd /STK=4 /UG=Rn.61093 /UG_TITLE=ESTs BF390686 unc-45 homolog B (C. elegans) Unc45b 303373 NM_001107028 0005488 // binding // inferred from electronic annotation 1377272_at BE112934 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112934 /DB_XREF=gi:8505039 /DB_XREF=UI-R-BJ1-awa-e-08-0-UI.s1 /CLONE=UI-R-BJ1-awa-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.15399.1 /TIER=ConsEnd /STK=4 /UG=Rn.15399 /UG_TITLE=ESTs BE112934 1377273_at BF389637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389637 /DB_XREF=gi:11374472 /DB_XREF=UI-R-BS2-bdn-a-06-0-UI.s1 /CLONE=UI-R-BS2-bdn-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.45420.1 /TIER=ConsEnd /STK=4 /UG=Rn.45420 /UG_TITLE=ESTs BF389637 1377274_at BF419624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419624 /DB_XREF=gi:11407613 /DB_XREF=UI-R-CA0-bpe-d-01-0-UI.s1 /CLONE=UI-R-CA0-bpe-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.63587.1 /TIER=ConsEnd /STK=4 /UG=Rn.63587 /UG_TITLE=ESTs BF419624 1377275_at AI175328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175328 /DB_XREF=gi:3725966 /DB_XREF=EST218868 /CLONE=RMUCM05 /FEA=EST /CNT=4 /TID=Rn.6493.1 /TIER=ConsEnd /STK=4 /UG=Rn.6493 /UG_TITLE=ESTs, Weakly similar to T-CELL ECTO-ADP-RIBOSYLTRANSFERASE 1 PRECURSOR (R.norvegicus) AI175328 ADP-ribosyltransferase 1 Art1 308873 NM_001107541 0006471 // protein ADP-ribosylation // inferred from electronic annotation /// 0006471 // protein ADP-ribosylation // not recorded 0009986 // cell surface // not recorded /// 0031225 // anchored to membrane // not recorded 0003950 // NAD+ ADP-ribosyltransferase activity // not recorded /// 0003956 // NAD(P)+-protein-arginine ADP-ribosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1377276_at BF394013 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394013 /DB_XREF=gi:11378842 /DB_XREF=UI-R-CA0-bgx-d-05-0-UI.s1 /CLONE=UI-R-CA0-bgx-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.59881.1 /TIER=ConsEnd /STK=4 /UG=Rn.59881 /UG_TITLE=ESTs, Moderately similar to CD5R MOUSE CYCLIN-DEPENDENT KINASE 5 ACTIVATOR 1 PRECURSOR (R.norvegicus) BF394013 Cyclin-dependent kinase 5, regulatory subunit 2 (p39) Cdk5r2 501164 NM_001109309 0016533 // cyclin-dependent protein kinase 5 holoenzyme complex // inferred from electronic annotation 0016534 // cyclin-dependent protein kinase 5 activator activity // inferred from electronic annotation 1377277_at BE117885 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117885 /DB_XREF=gi:8509990 /DB_XREF=UI-R-BS1-azm-b-06-0-UI.s1 /CLONE=UI-R-BS1-azm-b-06-0-UI /FEA=EST /CNT=4 /TID=Rn.25418.1 /TIER=ConsEnd /STK=4 /UG=Rn.25418 /UG_TITLE=ESTs BE117885 1377278_at AA957384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957384 /DB_XREF=gi:4277274 /DB_XREF=UI-R-E1-fu-a-11-0-UI.s1 /CLONE=UI-R-E1-fu-a-11-0-UI /FEA=EST /CNT=4 /TID=Rn.9270.1 /TIER=ConsEnd /STK=4 /UG=Rn.9270 /UG_TITLE=ESTs AA957384 1377279_at BF394097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394097 /DB_XREF=gi:11378961 /DB_XREF=UI-R-CA0-bgz-c-01-0-UI.s1 /CLONE=UI-R-CA0-bgz-c-01-0-UI /FEA=EST /CNT=4 /TID=Rn.26968.1 /TIER=ConsEnd /STK=4 /UG=Rn.26968 /UG_TITLE=ESTs BF394097 Hypothetical protein LOC689791 LOC689791 689791 1377280_at BF390931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390931 /DB_XREF=gi:11375778 /DB_XREF=UI-R-CA1-bce-c-02-0-UI.s1 /CLONE=UI-R-CA1-bce-c-02-0-UI /FEA=EST /CNT=4 /TID=Rn.62925.1 /TIER=ConsEnd /STK=4 /UG=Rn.62925 /UG_TITLE=ESTs, Weakly similar to ATP-binding cassette, sub-family F, member 2 (Homo sapiens) (H.sapiens) BF390931 ATP-binding cassette, sub-family F (GCN20), member 3 Abcf3 287982 NM_001011896 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1377281_at BM388545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388545 /DB_XREF=gi:18188598 /DB_XREF=UI-R-DZ0-ckm-g-06-0-UI.s1 /CLONE=UI-R-DZ0-ckm-g-06-0-UI /FEA=EST /CNT=4 /TID=Rn.50165.1 /TIER=ConsEnd /STK=4 /UG=Rn.50165 /UG_TITLE=ESTs BM388545 1377282_at BF390569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390569 /DB_XREF=gi:11375415 /DB_XREF=UI-R-CA1-bcc-f-02-0-UI.s1 /CLONE=UI-R-CA1-bcc-f-02-0-UI /FEA=EST /CNT=4 /TID=Rn.63113.1 /TIER=ConsEnd /STK=4 /UG=Rn.63113 /UG_TITLE=ESTs BF390569 1377283_at BI274486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274486 /DB_XREF=gi:14885443 /DB_XREF=UI-R-CW0-bwj-d-09-0-UI.s1 /CLONE=UI-R-CW0-bwj-d-09-0-UI /FEA=EST /CNT=4 /TID=Rn.49122.1 /TIER=ConsEnd /STK=4 /UG=Rn.49122 /UG_TITLE=ESTs BI274486 Hermansky-Pudlak syndrome 4 homolog (human) Hps4 304555 NM_001107148 0006605 // protein targeting // not recorded /// 0006996 // organelle organization // inferred from electronic annotation /// 0006996 // organelle organization // not recorded /// 0007040 // lysosome organization // not recorded /// 0007596 // blood coagulation // inferred from electronic annotation /// 0007596 // blood coagulation // not recorded /// 0030318 // melanocyte differentiation // inferred from electronic annotation /// 0030318 // melanocyte differentiation // not recorded /// 0050821 // protein stabilization // not recorded 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // not recorded /// 0005764 // lysosome // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0042470 // melanosome // not recorded /// 0042827 // platelet dense granule // not recorded 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0046983 // protein dimerization activity // not recorded 1377284_at BE112795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112795 /DB_XREF=gi:8504900 /DB_XREF=UI-R-BJ1-avo-h-04-0-UI.s1 /CLONE=UI-R-BJ1-avo-h-04-0-UI /FEA=EST /CNT=4 /TID=Rn.51197.1 /TIER=ConsEnd /STK=4 /UG=Rn.51197 /UG_TITLE=ESTs BE112795 1377285_at AI578851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578851 /DB_XREF=gi:4563227 /DB_XREF=UI-R-AA0-wp-b-04-0-UI.s1 /CLONE=UI-R-AA0-wp-b-04-0-UI /FEA=EST /CNT=4 /TID=Rn.38694.1 /TIER=ConsEnd /STK=4 /UG=Rn.38694 /UG_TITLE=ESTs, Weakly similar to RENAL TRANSCRIPTION FACTOR KID-1 (R.norvegicus) AI578851 Zinc finger protein 213 Znf213 287094 NM_001105764 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377286_at BM389208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389208 /DB_XREF=gi:18189261 /DB_XREF=UI-R-DZ0-cko-e-20-0-UI.s1 /CLONE=UI-R-DZ0-cko-e-20-0-UI /FEA=EST /CNT=4 /TID=Rn.43169.1 /TIER=ConsEnd /STK=4 /UG=Rn.43169 /UG_TITLE=ESTs BM389208 GTPase, IMAP family member 4 Gimap4 286938 NM_173153 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1377287_at AA957673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957673 /DB_XREF=gi:4277563 /DB_XREF=UI-R-E1-gf-d-12-0-UI.s1 /CLONE=UI-R-E1-gf-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.9355.1 /TIER=ConsEnd /STK=4 /UG=Rn.9355 /UG_TITLE=ESTs AA957673 methionyl-tRNA synthetase 2, mitochondrial Mars2 316403 XM_001066991 /// XM_237156 0006431 // methionyl-tRNA aminoacylation // inferred from electronic annotation /// 0006431 // methionyl-tRNA aminoacylation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004825 // methionine-tRNA ligase activity // inferred from electronic annotation /// 0004825 // methionine-tRNA ligase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1377288_at BI275801 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275801 /DB_XREF=gi:14920075 /DB_XREF=UI-R-CX0-bxg-g-06-0-UI.s1 /CLONE=UI-R-CX0-bxg-g-06-0-UI /FEA=EST /CNT=4 /TID=Rn.66222.1 /TIER=ConsEnd /STK=4 /UG=Rn.66222 /UG_TITLE=ESTs, Highly similar to HSF4_MOUSE HEAT SHOCK FACTOR PROTEIN 4 (HSF 4) (HEAT SHOCK TRANSCRIPTION FACTOR 4) (HSTF 4) (MHSF4) (M.musculus) BI275801 heat shock transcription factor 4 Hsf4 291960 NM_001106177 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001654 // eye development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0033169 // histone H3-K9 demethylation // not recorded /// 0043010 // camera-type eye development // not recorded /// 0045597 // positive regulation of cell differentiation // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048468 // cell development // not recorded /// 0051260 // protein homooligomerization // inferred from direct assay /// 0070207 // protein homotrimerization // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1377289_at BF393969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393969 /DB_XREF=gi:11378874 /DB_XREF=UI-R-CA0-bgx-h-01-0-UI.s1 /CLONE=UI-R-CA0-bgx-h-01-0-UI /FEA=EST /CNT=4 /TID=Rn.58197.1 /TIER=ConsEnd /STK=4 /UG=Rn.58197 /UG_TITLE=ESTs BF393969 LBXCOR1 homolog (mouse) Lbxcor1 315748 XM_001075793 /// XM_002727062 /// XM_002727063 /// XM_002727064 /// XM_002729929 /// XM_002729930 /// XM_002729931 /// XM_236329 0006350 // transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046332 // SMAD binding // not recorded 1377290_at BF389113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389113 /DB_XREF=gi:11373941 /DB_XREF=UI-R-BS2-bdl-a-02-0-UI.s1 /CLONE=UI-R-BS2-bdl-a-02-0-UI /FEA=EST /CNT=4 /TID=Rn.64385.1 /TIER=ConsEnd /STK=4 /UG=Rn.64385 /UG_TITLE=ESTs BF389113 trinucleotide repeat containing 6a Tnrc6a 308971 NM_001107549 0009267 // cellular response to starvation // not recorded /// 0035278 // negative regulation of translation involved in gene silencing by miRNA // not recorded 0035068 // micro-ribonucleoprotein complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1377291_at AW525040 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525040 /DB_XREF=gi:7167425 /DB_XREF=UI-R-BJ0p-aim-b-08-0-UI.s1 /CLONE=UI-R-BJ0p-aim-b-08-0-UI /FEA=EST /CNT=4 /TID=Rn.49068.1 /TIER=ConsEnd /STK=4 /UG=Rn.49068 /UG_TITLE=ESTs, Weakly similar to Y298_HUMAN Hypothetical protein KIAA0298 (H.sapiens) AW525040 tripartite motif-containing 66 Trim66 361623 NM_001191839 /// XM_001072969 /// XM_002725657 /// XM_002728800 /// XM_341901 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0010369 // chromocenter // inferred from electronic annotation /// 0010369 // chromocenter // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1377292_at BF403668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403668 /DB_XREF=gi:11391643 /DB_XREF=UI-R-CA1-bix-f-12-0-UI.s1 /CLONE=UI-R-CA1-bix-f-12-0-UI /FEA=EST /CNT=4 /TID=Rn.60343.1 /TIER=ConsEnd /STK=4 /UG=Rn.60343 /UG_TITLE=ESTs BF403668 1377293_at BF413676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413676 /DB_XREF=gi:11401665 /DB_XREF=UI-R-CA0-boh-c-02-0-UI.s1 /CLONE=UI-R-CA0-boh-c-02-0-UI /FEA=EST /CNT=4 /TID=Rn.62420.1 /TIER=ConsEnd /STK=4 /UG=Rn.62420 /UG_TITLE=ESTs BF413676 1377294_at BF401588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401588 /DB_XREF=gi:11389563 /DB_XREF=UI-R-CA0-bgm-d-05-0-UI.s1 /CLONE=UI-R-CA0-bgm-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.63699.1 /TIER=ConsEnd /STK=4 /UG=Rn.63699 /UG_TITLE=ESTs BF401588 1377295_at BF393974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393974 /DB_XREF=gi:11378879 /DB_XREF=UI-R-CA0-bgx-h-06-0-UI.s1 /CLONE=UI-R-CA0-bgx-h-06-0-UI /FEA=EST /CNT=4 /TID=Rn.58350.1 /TIER=ConsEnd /STK=4 /UG=Rn.58350 /UG_TITLE=ESTs BF393974 1377296_at BF387370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387370 /DB_XREF=gi:11372194 /DB_XREF=UI-R-CA1-bbr-f-06-0-UI.s1 /CLONE=UI-R-CA1-bbr-f-06-0-UI /FEA=EST /CNT=4 /TID=Rn.61478.1 /TIER=ConsEnd /STK=4 /UG=Rn.61478 /UG_TITLE=ESTs BF387370 1377297_at BE118384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118384 /DB_XREF=gi:8510489 /DB_XREF=UI-R-BJ1-azp-a-06-0-UI.s1 /CLONE=UI-R-BJ1-azp-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.52990.1 /TIER=ConsEnd /STK=4 /UG=Rn.52990 /UG_TITLE=ESTs BE118384 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) Ssu72 298681 NM_001025657 0006397 // mRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1377298_at BI296452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296452 /DB_XREF=gi:14960888 /DB_XREF=UI-R-CV2-cgr-d-03-0-UI.s1 /CLONE=UI-R-CV2-cgr-d-03-0-UI /FEA=EST /CNT=4 /TID=Rn.73432.1 /TIER=ConsEnd /STK=4 /UG=Rn.73432 /UG_TITLE=ESTs BI296452 1377299_at AI137618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137618 /DB_XREF=gi:3638395 /DB_XREF=UI-R-C0-hs-g-04-0-UI.s1 /CLONE=UI-R-C0-hs-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.27469.1 /TIER=ConsEnd /STK=4 /UG=Rn.27469 /UG_TITLE=ESTs, Moderately similar to NASP_HUMAN NUCLEAR AUTOANTIGENIC SPERM PROTEIN (H.sapiens) AI137618 nuclear autoantigenic sperm protein (histone-binding) Nasp 298441 NM_001005543 0001824 // blastocyst development // not recorded /// 0001824 // blastocyst development // inferred from sequence or structural similarity /// 0001824 // blastocyst development // inferred from electronic annotation /// 0006260 // DNA replication // not recorded /// 0006260 // DNA replication // inferred from sequence or structural similarity /// 0006260 // DNA replication // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007049 // cell cycle // not recorded /// 0007049 // cell cycle // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from sequence or structural similarity /// 0008283 // cell proliferation // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0043486 // histone exchange // not recorded /// 0043486 // histone exchange // inferred from sequence or structural similarity /// 0043486 // histone exchange // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042393 // histone binding // inferred from electronic annotation /// 0042393 // histone binding // not recorded /// 0051879 // Hsp90 protein binding // not recorded /// 0051879 // Hsp90 protein binding // inferred from sequence or structural similarity /// 0051879 // Hsp90 protein binding // inferred from electronic annotation 1377300_at AW520764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520764 /DB_XREF=gi:7163142 /DB_XREF=UI-R-BJ0p-agh-c-04-0-UI.s1 /CLONE=UI-R-BJ0p-agh-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.20913.1 /TIER=ConsEnd /STK=4 /UG=Rn.20913 /UG_TITLE=ESTs AW520764 dual specificity phosphatase 3 Dusp3 498003 NM_001173376 /// XM_001081500 /// XM_573199 0000188 // inactivation of MAPK activity // inferred from electronic annotation /// 0000188 // inactivation of MAPK activity // not recorded /// 0001701 // in utero embryonic development // inferred from direct assay /// 0006470 // protein dephosphorylation // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // not recorded /// 0043409 // negative regulation of MAPKKK cascade // not recorded /// 0043409 // negative regulation of MAPKKK cascade // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // not recorded /// 0046329 // negative regulation of JNK cascade // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // not recorded /// 0050860 // negative regulation of T cell receptor signaling pathway // inferred from electronic annotation /// 0050860 // negative regulation of T cell receptor signaling pathway // not recorded /// 0050868 // negative regulation of T cell activation // inferred from electronic annotation /// 0050868 // negative regulation of T cell activation // not recorded /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070373 // negative regulation of ERK1 and ERK2 cascade // not recorded 0001772 // immunological synapse // inferred from electronic annotation /// 0001772 // immunological synapse // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004721 // phosphoprotein phosphatase activity // not recorded /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0033549 // MAP kinase phosphatase activity // inferred from electronic annotation /// 0033549 // MAP kinase phosphatase activity // not recorded 1377301_at BF406641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406641 /DB_XREF=gi:11394616 /DB_XREF=UI-R-BJ2-bpv-d-11-0-UI.s1 /CLONE=UI-R-BJ2-bpv-d-11-0-UI /FEA=EST /CNT=4 /TID=Rn.61721.1 /TIER=ConsEnd /STK=4 /UG=Rn.61721 /UG_TITLE=ESTs BF406641 1377302_a_at AI145027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145027 /DB_XREF=gi:3666826 /DB_XREF=UI-R-BT0-pr-f-10-0-UI.s1 /CLONE=UI-R-BT0-pr-f-10-0-UI /FEA=EST /CNT=4 /TID=Rn.7591.1 /TIER=ConsEnd /STK=4 /UG=Rn.7591 /UG_TITLE=ESTs, Weakly similar to T02G5.13.p (Caenorhabditis elegans) (C.elegans) AI145027 methylmalonic aciduria (cobalamin deficiency) cblA type Mmaa 291939 NM_001106174 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1377303_at BG373000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373000 /DB_XREF=gi:13269537 /DB_XREF=UI-R-CV1-bsb-d-05-0-UI.s1 /CLONE=UI-R-CV1-bsb-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.20414.1 /TIER=ConsEnd /STK=4 /UG=Rn.20414 /UG_TITLE=ESTs BG373000 1377304_at BF389325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389325 /DB_XREF=gi:11374155 /DB_XREF=UI-R-BS2-bdm-e-06-0-UI.s1 /CLONE=UI-R-BS2-bdm-e-06-0-UI /FEA=EST /CNT=4 /TID=Rn.35370.1 /TIER=ConsEnd /STK=4 /UG=Rn.35370 /UG_TITLE=ESTs BF389325 1377305_at BE097699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097699 /DB_XREF=gi:8488630 /DB_XREF=UI-R-BO1-aqa-f-12-0-UI.s1 /CLONE=UI-R-BO1-aqa-f-12-0-UI /FEA=EST /CNT=4 /TID=Rn.49666.1 /TIER=ConsEnd /STK=4 /UG=Rn.49666 /UG_TITLE=ESTs BE097699 1377306_at BE097182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097182 /DB_XREF=gi:8488113 /DB_XREF=UI-R-BO1-apu-b-12-0-UI.s1 /CLONE=UI-R-BO1-apu-b-12-0-UI /FEA=EST /CNT=4 /TID=Rn.47703.1 /TIER=ConsEnd /STK=4 /UG=Rn.47703 /UG_TITLE=ESTs BE097182 1377307_at BM385387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385387 /DB_XREF=gi:18185440 /DB_XREF=UI-R-CN1-clv-j-07-0-UI.s1 /CLONE=UI-R-CN1-clv-j-07-0-UI /FEA=EST /CNT=4 /TID=Rn.66325.1 /TIER=ConsEnd /STK=4 /UG=Rn.66325 /UG_TITLE=ESTs BM385387 family with sequence similarity 89, member A Fam89a 361441 NM_001011711 1377308_a_at BF398408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398408 /DB_XREF=gi:11383397 /DB_XREF=UI-R-BS2-beo-e-05-0-UI.s1 /CLONE=UI-R-BS2-beo-e-05-0-UI /FEA=EST /CNT=4 /TID=Rn.2836.1 /TIER=ConsEnd /STK=4 /UG=Rn.2836 /UG_TITLE=ESTs BF398408 1377309_at AA963085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963085 /DB_XREF=gi:4278055 /DB_XREF=UI-R-E1-fx-b-07-0-UI.s1 /CLONE=UI-R-E1-fx-b-07-0-UI /FEA=EST /CNT=4 /TID=Rn.38035.1 /TIER=ConsEnd /STK=4 /UG=Rn.38035 /UG_TITLE=ESTs AA963085 1377310_at BG374304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374304 /DB_XREF=gi:13298776 /DB_XREF=UI-R-CV1-bsn-g-08-0-UI.s1 /CLONE=UI-R-CV1-bsn-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.40264.1 /TIER=ConsEnd /STK=4 /UG=Rn.40264 /UG_TITLE=ESTs BG374304 1377311_at AI045616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045616 /DB_XREF=gi:3292435 /DB_XREF=UI-R-C1-ka-c-09-0-UI.s1 /CLONE=UI-R-C1-ka-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.16276.1 /TIER=ConsEnd /STK=4 /UG=Rn.16276 /UG_TITLE=ESTs AI045616 empty spiracles homeobox 2 Emx2 499380 NM_001109169 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0021542 // dentate gyrus development // not recorded /// 0021796 // cerebral cortex regionalization // not recorded /// 0021846 // cell proliferation in forebrain // not recorded /// 0021885 // forebrain cell migration // not recorded /// 0030182 // neuron differentiation // not recorded /// 0030900 // forebrain development // not recorded /// 0042493 // response to drug // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0071109 // superior temporal gyrus development // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1377312_at BF401679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401679 /DB_XREF=gi:11389654 /DB_XREF=UI-R-CA0-bgn-d-07-0-UI.s1 /CLONE=UI-R-CA0-bgn-d-07-0-UI /FEA=EST /CNT=4 /TID=Rn.51953.1 /TIER=ConsEnd /STK=4 /UG=Rn.51953 /UG_TITLE=ESTs BF401679 1377313_at BI298335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298335 /DB_XREF=gi:14974615 /DB_XREF=UI-R-CV2-cho-b-01-0-UI.s1 /CLONE=UI-R-CV2-cho-b-01-0-UI /FEA=EST /CNT=4 /TID=Rn.62705.1 /TIER=ConsEnd /STK=4 /UG=Rn.62705 /UG_TITLE=ESTs BI298335 1377314_at BE104391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104391 /DB_XREF=gi:8496491 /DB_XREF=UI-R-BX0-aro-c-12-0-UI.s1 /CLONE=UI-R-BX0-aro-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.18898.1 /TIER=ConsEnd /STK=4 /UG=Rn.18898 /UG_TITLE=ESTs, Highly similar to I53743 glutamine--fructose-6-phosphate transaminase (isomerizing) (EC 2.6.1.16) - mouse (M.musculus) BE104391 glutamine fructose-6-phosphate transaminase 1 Gfpt1 297417 NM_001005879 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006002 // fructose 6-phosphate metabolic process // inferred from direct assay /// 0006042 // glucosamine biosynthetic process // inferred from direct assay /// 0006047 // UDP-N-acetylglucosamine metabolic process // inferred from mutant phenotype /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009744 // response to sucrose stimulus // inferred from expression pattern /// 0016051 // carbohydrate biosynthetic process // inferred from electronic annotation /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0045719 // negative regulation of glycogen biosynthetic process // inferred from mutant phenotype /// 0051289 // protein homotetramerization // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0004360 // glutamine-fructose-6-phosphate transaminase (isomerizing) activity // inferred from direct assay /// 0004360 // glutamine-fructose-6-phosphate transaminase (isomerizing) activity // inferred from electronic annotation /// 0005529 // sugar binding // inferred from direct assay /// 0005529 // sugar binding // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation 1377315_at BF412662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412662 /DB_XREF=gi:11400651 /DB_XREF=UI-R-BT1-bnq-e-11-0-UI.s1 /CLONE=UI-R-BT1-bnq-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.64392.1 /TIER=ConsEnd /STK=4 /UG=Rn.64392 /UG_TITLE=ESTs BF412662 1377316_at BF397728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397728 /DB_XREF=gi:11382712 /DB_XREF=UI-R-BS2-bed-h-09-0-UI.s1 /CLONE=UI-R-BS2-bed-h-09-0-UI /FEA=EST /CNT=4 /TID=Rn.43063.1 /TIER=ConsEnd /STK=4 /UG=Rn.43063 /UG_TITLE=ESTs BF397728 1377317_at BF390379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390379 /DB_XREF=gi:11375225 /DB_XREF=UI-R-CA1-bcg-c-11-0-UI.s1 /CLONE=UI-R-CA1-bcg-c-11-0-UI /FEA=EST /CNT=4 /TID=Rn.59964.1 /TIER=ConsEnd /STK=4 /UG=Rn.59964 /UG_TITLE=ESTs BF390379 1377318_at BF415648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415648 /DB_XREF=gi:11403637 /DB_XREF=UI-R-CA1-bkb-h-08-0-UI.s1 /CLONE=UI-R-CA1-bkb-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.62770.1 /TIER=ConsEnd /STK=4 /UG=Rn.62770 /UG_TITLE=ESTs BF415648 1377319_at BF404163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404163 /DB_XREF=gi:11392138 /DB_XREF=UI-R-CA1-biw-p-18-0-UI.s1 /CLONE=UI-R-CA1-biw-p-18-0-UI /FEA=EST /CNT=4 /TID=Rn.43917.1 /TIER=ConsEnd /STK=4 /UG=Rn.43917 /UG_TITLE=ESTs BF404163 1377320_at BF409110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409110 /DB_XREF=gi:11397085 /DB_XREF=UI-R-BT1-bkm-b-02-0-UI.s1 /CLONE=UI-R-BT1-bkm-b-02-0-UI /FEA=EST /CNT=4 /TID=Rn.61252.1 /TIER=ConsEnd /STK=4 /UG=Rn.61252 /UG_TITLE=ESTs BF409110 1377321_at BF415831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415831 /DB_XREF=gi:11403820 /DB_XREF=UI-R-CA1-bkf-e-01-0-UI.s1 /CLONE=UI-R-CA1-bkf-e-01-0-UI /FEA=EST /CNT=4 /TID=Rn.62828.1 /TIER=ConsEnd /STK=4 /UG=Rn.62828 /UG_TITLE=ESTs BF415831 1377322_at BE117290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117290 /DB_XREF=gi:8509395 /DB_XREF=UI-R-BS1-ayn-a-07-0-UI.s1 /CLONE=UI-R-BS1-ayn-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.52812.1 /TIER=ConsEnd /STK=4 /UG=Rn.52812 /UG_TITLE=ESTs BE117290 1377323_at AW434922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434922 /DB_XREF=gi:6966229 /DB_XREF=UI-R-BJ0p-afg-f-01-0-UI.s1 /CLONE=UI-R-BJ0p-afg-f-01-0-UI /FEA=EST /CNT=4 /TID=Rn.21662.1 /TIER=ConsEnd /STK=4 /UG=Rn.21662 /UG_TITLE=ESTs AW434922 hypothetical protein LOC100137086 /// phospholipase A2, group IVB (cytosolic) LOC100137086 /// Pla2g4b 100137086 /// 311341 NM_001107764 /// NM_001114656 0008152 // metabolic process // inferred from electronic annotation /// 0009395 // phospholipid catabolic process // inferred from electronic annotation /// 0046475 // glycerophospholipid catabolic process // not recorded 0005829 // cytosol // not recorded 0004620 // phospholipase activity // inferred from electronic annotation /// 0047498 // calcium-dependent phospholipase A2 activity // not recorded 1377324_at BF412777 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412777 /DB_XREF=gi:11400766 /DB_XREF=UI-R-BT1-bnz-c-06-0-UI.s1 /CLONE=UI-R-BT1-bnz-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.62289.1 /TIER=ConsEnd /STK=4 /UG=Rn.62289 /UG_TITLE=ESTs BF412777 hypothetical protein LOC689600 /// RGD1564599 LOC689600 /// RGD1564599 293925 /// 689600 NM_001106351 /// NM_001173448 /// XM_001071324 /// XM_002725646 1377325_a_at AW531278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531278 /DB_XREF=gi:7173692 /DB_XREF=UI-R-BS0-aml-h-06-0-UI.s1 /CLONE=UI-R-BS0-aml-h-06-0-UI /FEA=EST /CNT=4 /TID=Rn.23835.1 /TIER=ConsEnd /STK=4 /UG=Rn.23835 /UG_TITLE=ESTs AW531278 phosphoglucomutase 2-like 1 Pgm2l1 685076 NM_001109454 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0016868 // intramolecular transferase activity, phosphotransferases // inferred from electronic annotation 1377326_at AW254416 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254416 /DB_XREF=gi:6598007 /DB_XREF=UI-R-BJ0-aei-f-09-0-UI.s1 /CLONE=UI-R-BJ0-aei-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.40710.1 /TIER=ConsEnd /STK=4 /UG=Rn.40710 /UG_TITLE=ESTs AW254416 Cysteine-serine-rich nuclear protein 2 Csrnp2 315308 NM_001108113 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // not recorded 1377327_at AI008151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008151 /DB_XREF=gi:3221983 /DB_XREF=EST202602 /CLONE=REMAT57 /FEA=EST /CNT=4 /TID=Rn.13785.1 /TIER=ConsEnd /STK=4 /UG=Rn.13785 /UG_TITLE=ESTs AI008151 1377328_at BI290012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290012 /DB_XREF=gi:14948177 /DB_XREF=UI-R-DK0-cfq-g-09-0-UI.s1 /CLONE=UI-R-DK0-cfq-g-09-0-UI /FEA=EST /CNT=4 /TID=Rn.31427.1 /TIER=ConsEnd /STK=4 /UG=Rn.31427 /UG_TITLE=ESTs BI290012 1377329_at BE113460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113460 /DB_XREF=gi:8505565 /DB_XREF=UI-R-BJ1-awl-e-11-0-UI.s1 /CLONE=UI-R-BJ1-awl-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.15241.1 /TIER=ConsEnd /STK=4 /UG=Rn.15241 /UG_TITLE=ESTs BE113460 1377330_at BF411114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411114 /DB_XREF=gi:11399089 /DB_XREF=UI-R-BT1-bmm-a-06-0-UI.s1 /CLONE=UI-R-BT1-bmm-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.62243.1 /TIER=ConsEnd /STK=4 /UG=Rn.62243 /UG_TITLE=ESTs BF411114 1377331_at AW532469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532469 /DB_XREF=gi:7174883 /DB_XREF=UI-R-BS0-ami-a-07-0-UI.s1 /CLONE=UI-R-BS0-ami-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.47961.1 /TIER=ConsEnd /STK=4 /UG=Rn.47961 /UG_TITLE=ESTs AW532469 1377332_at BF403350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403350 /DB_XREF=gi:11391325 /DB_XREF=UI-R-CA1-biy-i-20-0-UI.s1 /CLONE=UI-R-CA1-biy-i-20-0-UI /FEA=EST /CNT=4 /TID=Rn.61756.1 /TIER=ConsEnd /STK=4 /UG=Rn.61756 /UG_TITLE=ESTs BF403350 1377333_at BE114427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114427 /DB_XREF=gi:8506532 /DB_XREF=UI-R-CA0-axm-b-04-0-UI.s1 /CLONE=UI-R-CA0-axm-b-04-0-UI /FEA=EST /CNT=4 /TID=Rn.18255.1 /TIER=ConsEnd /STK=4 /UG=Rn.18255 /UG_TITLE=ESTs BE114427 1377334_at BG378249 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378249 /DB_XREF=gi:13302721 /DB_XREF=UI-R-CV1-bvp-h-01-0-UI.s1 /CLONE=UI-R-CV1-bvp-h-01-0-UI /FEA=EST /CNT=4 /TID=Rn.39138.1 /TIER=ConsEnd /STK=4 /UG=Rn.39138 /UG_TITLE=ESTs, Moderately similar to I54411 MHC RT1-B A-alpha chain - rat (R.norvegicus) BG378249 RT1 class II, locus Ba RT1-Ba 309621 NM_001008831 0002504 // antigen processing and presentation of peptide or polysaccharide antigen via MHC class II // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // not recorded /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // not recorded /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // inferred from electronic annotation /// 0045582 // positive regulation of T cell differentiation // not recorded /// 0045582 // positive regulation of T cell differentiation // inferred from electronic annotation /// 0048002 // antigen processing and presentation of peptide antigen // not recorded /// 0048002 // antigen processing and presentation of peptide antigen // inferred from electronic annotation 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042613 // MHC class II protein complex // inferred from electronic annotation /// 0042613 // MHC class II protein complex // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042605 // peptide antigen binding // not recorded /// 0042605 // peptide antigen binding // inferred from electronic annotation 1377335_at BM386404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386404 /DB_XREF=gi:18186457 /DB_XREF=UI-R-CN1-cjf-j-22-0-UI.s1 /CLONE=UI-R-CN1-cjf-j-22-0-UI /FEA=EST /CNT=4 /TID=Rn.54025.1 /TIER=ConsEnd /STK=4 /UG=Rn.54025 /UG_TITLE=ESTs BM386404 ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) Abo 65270 NM_023094 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0042742 // defense response to bacterium // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0004380 // glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity // inferred from direct assay /// 0004380 // glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0004381 // fucosylgalactoside 3-alpha-galactosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377336_at BI275485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275485 /DB_XREF=gi:14887388 /DB_XREF=UI-R-CX0-bwy-a-10-0-UI.s1 /CLONE=UI-R-CX0-bwy-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.26859.1 /TIER=ConsEnd /STK=4 /UG=Rn.26859 /UG_TITLE=ESTs, Highly similar to semaphorin A (M.musculus) BI275485 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B Sema3b 363142 NM_001079942 0007275 // multicellular organismal development // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1377337_at BE119412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119412 /DB_XREF=gi:8511517 /DB_XREF=UI-R-CA0-bac-c-12-0-UI.s1 /CLONE=UI-R-CA0-bac-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.53238.1 /TIER=ConsEnd /STK=4 /UG=Rn.53238 /UG_TITLE=ESTs BE119412 1377338_at BF395193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395193 /DB_XREF=gi:11380158 /DB_XREF=UI-R-CM0-bjj-h-12-0-UI.s1 /CLONE=UI-R-CM0-bjj-h-12-0-UI /FEA=EST /CNT=4 /TID=Rn.27018.1 /TIER=ConsEnd /STK=4 /UG=Rn.27018 /UG_TITLE=ESTs, Weakly similar to T43313 Rad1-like protein - Caenorhabditis elegans (C.elegans) BF395193 RAD1 homolog (S. pombe) Rad1 294800 NM_001106419 0006260 // DNA replication // not recorded /// 0006281 // DNA repair // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003684 // damaged DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008408 // 3'-5' exonuclease activity // not recorded /// 0008853 // exodeoxyribonuclease III activity // inferred from electronic annotation 1377339_at BF394338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394338 /DB_XREF=gi:11379202 /DB_XREF=UI-R-CA0-bgr-g-02-0-UI.s1 /CLONE=UI-R-CA0-bgr-g-02-0-UI /FEA=EST /CNT=4 /TID=Rn.58266.1 /TIER=ConsEnd /STK=4 /UG=Rn.58266 /UG_TITLE=ESTs BF394338 Similar to GTL2, imprinted maternally expressed untranslated RGD1566401 500717 XR_008690 /// XR_086281 1377340_at AI179507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179507 /DB_XREF=gi:3730145 /DB_XREF=EST223226 /CLONE=RSPCI31 /FEA=EST /CNT=4 /TID=Rn.15776.1 /TIER=ConsEnd /STK=4 /UG=Rn.15776 /UG_TITLE=ESTs AI179507 tissue factor pathway inhibitor 2 Tfpi2 286926 NM_173141 0007596 // blood coagulation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1377341_at AA859545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859545 /DB_XREF=gi:4230091 /DB_XREF=UI-R-E0-br-d-06-0-UI.s1 /CLONE=UI-R-E0-br-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.261.1 /TIER=ConsEnd /STK=4 /UG=Rn.261 /UG_TITLE=ESTs AA859545 similar to hypothetical protein FLJ10925 RGD1305455 288545 NM_001024969 1377342_s_at BE105446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105446 /DB_XREF=gi:8497548 /DB_XREF=UI-R-BO1-asn-h-03-0-UI.s1 /CLONE=UI-R-BO1-asn-h-03-0-UI /FEA=EST /CNT=4 /TID=Rn.50776.1 /TIER=ConsEnd /STK=4 /UG=Rn.50776 /UG_TITLE=ESTs, Highly similar to S64718 formin-binding protein 17 - mouse (M.musculus) BE105446 formin binding protein 1 Fnbp1 192348 NM_138914 0006897 // endocytosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from direct assay /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1377343_at BF405097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405097 /DB_XREF=gi:11393072 /DB_XREF=UI-R-CA1-bip-f-02-0-UI.s1 /CLONE=UI-R-CA1-bip-f-02-0-UI /FEA=EST /CNT=4 /TID=Rn.62749.1 /TIER=ConsEnd /STK=4 /UG=Rn.62749 /UG_TITLE=ESTs BF405097 1377344_at BF410484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410484 /DB_XREF=gi:11398459 /DB_XREF=UI-R-CA0-bme-b-12-0-UI.s1 /CLONE=UI-R-CA0-bme-b-12-0-UI /FEA=EST /CNT=4 /TID=Rn.53776.1 /TIER=ConsEnd /STK=4 /UG=Rn.53776 /UG_TITLE=ESTs BF410484 1377345_at AI502211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502211 /DB_XREF=gi:4400062 /DB_XREF=UI-R-C0-iy-f-07-0-UI.s1 /CLONE=UI-R-C0-iy-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.12595.1 /TIER=ConsEnd /STK=4 /UG=Rn.12595 /UG_TITLE=ESTs AI502211 1377346_at AI112098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112098 /DB_XREF=gi:3512047 /DB_XREF=UI-R-Y0-mo-e-01-0-UI.s1 /CLONE=UI-R-Y0-mo-e-01-0-UI /FEA=EST /CNT=4 /TID=Rn.19629.1 /TIER=ConsEnd /STK=4 /UG=Rn.19629 /UG_TITLE=ESTs AI112098 1377347_at AW531892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531892 /DB_XREF=gi:7174306 /DB_XREF=UI-R-BS0-amj-e-11-0-UI.s1 /CLONE=UI-R-BS0-amj-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.15628.1 /TIER=ConsEnd /STK=4 /UG=Rn.15628 /UG_TITLE=ESTs AW531892 forkhead box J3 Foxj3 313554 NM_001107971 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1377348_at BF393968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393968 /DB_XREF=gi:11378873 /DB_XREF=UI-R-CA0-bgx-g-12-0-UI.s1 /CLONE=UI-R-CA0-bgx-g-12-0-UI /FEA=EST /CNT=4 /TID=Rn.62566.1 /TIER=ConsEnd /STK=4 /UG=Rn.62566 /UG_TITLE=ESTs BF393968 1377349_at BE106570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106570 /DB_XREF=gi:8498672 /DB_XREF=UI-R-BO1-asp-e-06-0-UI.s1 /CLONE=UI-R-BO1-asp-e-06-0-UI /FEA=EST /CNT=4 /TID=Rn.50997.1 /TIER=ConsEnd /STK=4 /UG=Rn.50997 /UG_TITLE=ESTs BE106570 1377350_at AA859898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859898 /DB_XREF=gi:4230435 /DB_XREF=UI-R-E0-cg-a-02-0-UI.s1 /CLONE=UI-R-E0-cg-a-02-0-UI /FEA=EST /CNT=4 /TID=Rn.809.1 /TIER=ConsEnd /STK=4 /UG=Rn.809 /UG_TITLE=ESTs AA859898 1377351_at AI407337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407337 /DB_XREF=gi:4250841 /DB_XREF=EST235626 /CLONE=ROVEE04 /FEA=EST /CNT=4 /TID=Rn.3005.1 /TIER=ConsEnd /STK=4 /UG=Rn.3005 /UG_TITLE=ESTs AI407337 sushi domain containing 3 Susd3 306810 NM_001107341 1377352_at BF410306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410306 /DB_XREF=gi:11398281 /DB_XREF=UI-R-CA1-bjv-h-12-0-UI.s1 /CLONE=UI-R-CA1-bjv-h-12-0-UI /FEA=EST /CNT=4 /TID=Rn.63536.1 /TIER=ConsEnd /STK=4 /UG=Rn.63536 /UG_TITLE=ESTs BF410306 1377353_a_at AA800814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800814 /DB_XREF=gi:4131542 /DB_XREF=EST190311 /CLONE=RLUAL75 /FEA=EST /CNT=4 /TID=Rn.19955.1 /TIER=ConsEnd /STK=4 /UG=Rn.19955 /UG_TITLE=ESTs AA800814 tumor necrosis factor (ligand) superfamily, member 13 Tnfsf13 287437 NM_001009623 0002426 // immunoglobulin production in mucosal tissue // not recorded /// 0002636 // positive regulation of germinal center formation // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0016064 // immunoglobulin mediated immune response // not recorded /// 0048298 // positive regulation of isotype switching to IgA isotypes // not recorded /// 0050776 // regulation of immune response // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1377354_at BI290660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290660 /DB_XREF=gi:14949440 /DB_XREF=UI-R-DK0-cfx-h-04-0-UI.s1 /CLONE=UI-R-DK0-cfx-h-04-0-UI /FEA=EST /CNT=4 /TID=Rn.21190.1 /TIER=ConsEnd /STK=4 /UG=Rn.21190 /UG_TITLE=ESTs BI290660 1377355_at BI279326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279326 /DB_XREF=gi:14927035 /DB_XREF=UI-R-DA0-byn-a-05-0-UI.s1 /CLONE=UI-R-DA0-byn-a-05-0-UI /FEA=EST /CNT=4 /TID=Rn.54355.1 /TIER=ConsEnd /STK=4 /UG=Rn.54355 /UG_TITLE=ESTs BI279326 LOC362451 RGD1306750 362451 NM_001108649 1377356_at AA963795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963795 /DB_XREF=gi:4278737 /DB_XREF=UI-R-E1-gk-g-10-0-UI.s1 /CLONE=UI-R-E1-gk-g-10-0-UI /FEA=EST /CNT=4 /TID=Rn.11632.1 /TIER=ConsEnd /STK=4 /UG=Rn.11632 /UG_TITLE=ESTs AA963795 glycerophosphodiester phosphodiesterase domain containing 5 Gdpd5 499211 NM_001109152 0006071 // glycerol metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0008889 // glycerophosphodiester phosphodiesterase activity // inferred from electronic annotation 1377357_at BE106428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106428 /DB_XREF=gi:8498530 /DB_XREF=UI-R-BT1-asv-h-05-0-UI.s1 /CLONE=UI-R-BT1-asv-h-05-0-UI /FEA=EST /CNT=4 /TID=Rn.23597.1 /TIER=ConsEnd /STK=4 /UG=Rn.23597 /UG_TITLE=ESTs BE106428 1377358_at AW253361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253361 /DB_XREF=gi:6596952 /DB_XREF=UI-R-BJ0-aen-a-07-0-UI.s1 /CLONE=UI-R-BJ0-aen-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.16196.1 /TIER=ConsEnd /STK=4 /UG=Rn.16196 /UG_TITLE=ESTs AW253361 1377359_at BM384440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384440 /DB_XREF=gi:18184493 /DB_XREF=UI-R-CN1-cjn-k-24-0-UI.s1 /CLONE=UI-R-CN1-cjn-k-24-0-UI /FEA=EST /CNT=4 /TID=Rn.23166.1 /TIER=ConsEnd /STK=4 /UG=Rn.23166 /UG_TITLE=ESTs, Highly similar to P3 PROTEIN (M.musculus) BM384440 solute carrier family 10 (sodium/bile acid cotransporter family), member 3 Slc10a3 501665 NM_001024368 0006814 // sodium ion transport // inferred from electronic annotation /// 0015711 // organic anion transport // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032526 // response to retinoic acid // not recorded /// 0042221 // response to chemical stimulus // inferred from electronic annotation /// 0042221 // response to chemical stimulus // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008508 // bile acid:sodium symporter activity // inferred from electronic annotation 1377360_at AI599729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599729 /DB_XREF=gi:4608777 /DB_XREF=EST251432 /CLONE=REMEG46 /FEA=EST /CNT=4 /TID=Rn.38922.1 /TIER=ConsEnd /STK=4 /UG=Rn.38922 /UG_TITLE=ESTs, Weakly similar to KEMK MOUSE PUTATIVE SERINETHREONINE-PROTEIN KINASE EMK (M.musculus) AI599729 MAP/microtubule affinity-regulating kinase 4 Mark4 680407 NM_001191071 /// XM_001057742 /// XM_002725542 /// XM_002725543 /// XM_002728699 0000226 // microtubule cytoskeleton organization // not recorded /// 0001578 // microtubule bundle formation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007399 // nervous system development // not recorded 0005813 // centrosome // not recorded /// 0005815 // microtubule organizing center // not recorded /// 0015630 // microtubule cytoskeleton // not recorded /// 0043005 // neuron projection // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0043015 // gamma-tubulin binding // not recorded /// 0050321 // tau-protein kinase activity // not recorded 1377361_at AA900337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900337 /DB_XREF=gi:4232827 /DB_XREF=UI-R-E0-cp-f-07-0-UI.s2 /CLONE=UI-R-E0-cp-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.41564.1 /TIER=ConsEnd /STK=4 /UG=Rn.41564 /UG_TITLE=ESTs AA900337 1377362_at BF390409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390409 /DB_XREF=gi:11375255 /DB_XREF=UI-R-CA1-bcg-f-08-0-UI.s1 /CLONE=UI-R-CA1-bcg-f-08-0-UI /FEA=EST /CNT=4 /TID=Rn.60000.1 /TIER=ConsEnd /STK=4 /UG=Rn.60000 /UG_TITLE=ESTs BF390409 1377363_at AA945861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945861 /DB_XREF=gi:3105777 /DB_XREF=EST201360 /CLONE=RLUAW20 /FEA=EST /CNT=4 /TID=Rn.7929.1 /TIER=ConsEnd /STK=4 /UG=Rn.7929 /UG_TITLE=ESTs, Weakly similar to R11A_HUMAN RAS-RELATED PROTEIN RAB-11A (R.norvegicus) AA945861 RAB25, member RAS oncogene family Rab25 310632 NM_001107687 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0031268 // pseudopodium organization // inferred from electronic annotation /// 0031268 // pseudopodium organization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0031143 // pseudopodium // inferred from electronic annotation /// 0031143 // pseudopodium // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1377364_at BF399586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399586 /DB_XREF=gi:11384594 /DB_XREF=UI-R-CA0-bht-f-09-0-UI.s2 /CLONE=UI-R-CA0-bht-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.62214.1 /TIER=ConsEnd /STK=4 /UG=Rn.62214 /UG_TITLE=ESTs BF399586 KIAA1440-like LOC100365889 100365889 XM_002724782 1377365_at BG372342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372342 /DB_XREF=gi:13268879 /DB_XREF=UI-R-CV0-brr-e-11-0-UI.s1 /CLONE=UI-R-CV0-brr-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.51170.1 /TIER=ConsEnd /STK=4 /UG=Rn.51170 /UG_TITLE=ESTs BG372342 pleckstrin homology domain containing, family N member 1 Plekhn1 298694 NM_001134523 0005515 // protein binding // not recorded 1377366_at BF389753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389753 /DB_XREF=gi:11374589 /DB_XREF=UI-R-BS2-bdo-d-03-0-UI.s1 /CLONE=UI-R-BS2-bdo-d-03-0-UI /FEA=EST /CNT=4 /TID=Rn.15176.1 /TIER=ConsEnd /STK=4 /UG=Rn.15176 /UG_TITLE=ESTs BF389753 1377367_at BE099439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099439 /DB_XREF=gi:8491280 /DB_XREF=UI-R-BJ1-atw-a-07-0-UI.s1 /CLONE=UI-R-BJ1-atw-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.49867.1 /TIER=ConsEnd /STK=4 /UG=Rn.49867 /UG_TITLE=ESTs BE099439 Kazal-type serine peptidase inhibitor domain 1 Kazald1 293997 NM_001033064 0001558 // regulation of cell growth // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005614 // interstitial matrix // inferred from electronic annotation /// 0005614 // interstitial matrix // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0005520 // insulin-like growth factor binding // inferred from electronic annotation 1377368_at AW529710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529710 /DB_XREF=gi:7172124 /DB_XREF=UI-R-BU0-amr-d-09-0-UI.s1 /CLONE=UI-R-BU0-amr-d-09-0-UI /FEA=EST /CNT=4 /TID=Rn.66643.1 /TIER=ConsEnd /STK=4 /UG=Rn.66643 /UG_TITLE=ESTs AW529710 1377369_at BF419070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419070 /DB_XREF=gi:11407059 /DB_XREF=UI-R-BJ2-bqn-b-12-0-UI.s1 /CLONE=UI-R-BJ2-bqn-b-12-0-UI /FEA=EST /CNT=4 /TID=Rn.32700.1 /TIER=ConsEnd /STK=4 /UG=Rn.32700 /UG_TITLE=ESTs, Highly similar to SPRT RAT SPROUTIN (R.norvegicus) BF419070 cytochrome b reductase 1 Cybrd1 295669 NM_001011954 0006810 // transport // inferred from electronic annotation /// 0010039 // response to iron ion // inferred from electronic annotation /// 0010039 // response to iron ion // not recorded /// 0022900 // electron transport chain // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from electronic annotation /// 0031526 // brush border membrane // not recorded 0000293 // ferric-chelate reductase activity // inferred from electronic annotation /// 0000293 // ferric-chelate reductase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377370_at BF406860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406860 /DB_XREF=gi:11394835 /DB_XREF=UI-R-BJ2-bpp-h-12-0-UI.s1 /CLONE=UI-R-BJ2-bpp-h-12-0-UI /FEA=EST /CNT=4 /TID=Rn.40817.2 /TIER=ConsEnd /STK=4 /UG=Rn.40817 /UG_TITLE=ESTs BF406860 1377371_a_at BE098827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098827 /DB_XREF=gi:8490697 /DB_XREF=UI-R-BJ1-ate-c-11-0-UI.s1 /CLONE=UI-R-BJ1-ate-c-11-0-UI /FEA=EST /CNT=4 /TID=Rn.47902.1 /TIER=ConsEnd /STK=4 /UG=Rn.47902 /UG_TITLE=ESTs BE098827 1377372_at AW254527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254527 /DB_XREF=gi:6598118 /DB_XREF=UI-R-BJ0-aej-c-08-0-UI.s1 /CLONE=UI-R-BJ0-aej-c-08-0-UI /FEA=EST /CNT=4 /TID=Rn.41487.1 /TIER=ConsEnd /STK=4 /UG=Rn.41487 /UG_TITLE=ESTs AW254527 1377373_at BF403955 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403955 /DB_XREF=gi:11391930 /DB_XREF=UI-R-CA1-bjd-n-13-0-UI.s1 /CLONE=UI-R-CA1-bjd-n-13-0-UI /FEA=EST /CNT=4 /TID=Rn.57568.1 /TIER=ConsEnd /STK=4 /UG=Rn.57568 /UG_TITLE=ESTs BF403955 1377374_at AI146055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146055 /DB_XREF=gi:3667854 /DB_XREF=UI-R-BT0-qg-e-12-0-UI.s1 /CLONE=UI-R-BT0-qg-e-12-0-UI /FEA=EST /CNT=4 /TID=Rn.28718.1 /TIER=ConsEnd /STK=4 /UG=Rn.28718 /UG_TITLE=ESTs AI146055 1377375_at AA944898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944898 /DB_XREF=gi:3104814 /DB_XREF=EST200397 /CLONE=REMAQ51 /FEA=EST /CNT=4 /TID=Rn.23007.1 /TIER=ConsEnd /STK=4 /UG=Rn.23007 /UG_TITLE=ESTs AA944898 aminoadipate-semialdehyde synthase Aass 296925 NM_001100963 0008152 // metabolic process // inferred from electronic annotation /// 0019477 // L-lysine catabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0047130 // saccharopine dehydrogenase (NADP+, L-lysine-forming) activity // inferred from electronic annotation /// 0047131 // saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity // inferred from electronic annotation 1377376_at BF397554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397554 /DB_XREF=gi:11382537 /DB_XREF=UI-R-BS2-bez-h-05-0-UI.s1 /CLONE=UI-R-BS2-bez-h-05-0-UI /FEA=EST /CNT=4 /TID=Rn.61193.1 /TIER=ConsEnd /STK=4 /UG=Rn.61193 /UG_TITLE=ESTs BF397554 1377377_at BF415808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415808 /DB_XREF=gi:11403797 /DB_XREF=UI-R-CA1-bkf-b-06-0-UI.s1 /CLONE=UI-R-CA1-bkf-b-06-0-UI /FEA=EST /CNT=4 /TID=Rn.62822.1 /TIER=ConsEnd /STK=4 /UG=Rn.62822 /UG_TITLE=ESTs BF415808 1377378_at BF396369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396369 /DB_XREF=gi:11381341 /DB_XREF=UI-R-BS2-bdx-d-01-0-UI.s1 /CLONE=UI-R-BS2-bdx-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.63700.1 /TIER=ConsEnd /STK=4 /UG=Rn.63700 /UG_TITLE=ESTs BF396369 sodium channel, voltage-gated, type V, alpha subunit Scn5a 25665 NM_001160162 /// NM_013125 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation 0001518 // voltage-gated sodium channel complex // inferred from electronic annotation /// 0001518 // voltage-gated sodium channel complex // traceable author statement /// 0005886 // plasma membrane // not recorded /// 0014704 // intercalated disc // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030315 // T-tubule // not recorded /// 0042383 // sarcolemma // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005248 // voltage-gated sodium channel activity // inferred from electronic annotation /// 0005248 // voltage-gated sodium channel activity // traceable author statement /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1377379_at BF410603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410603 /DB_XREF=gi:11398620 /DB_XREF=UI-R-CA0-bmb-b-06-0-UI.s1 /CLONE=UI-R-CA0-bmb-b-06-0-UI /FEA=EST /CNT=4 /TID=Rn.12385.1 /TIER=ConsEnd /STK=4 /UG=Rn.12385 /UG_TITLE=ESTs BF410603 interferon regulatory factor 6 Irf6 364081 NM_001108859 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0030216 // keratinocyte differentiation // not recorded /// 0043588 // skin development // not recorded /// 0043616 // keratinocyte proliferation // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0048468 // cell development // not recorded /// 0060644 // mammary gland epithelial cell differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded 1377380_at AI060045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060045 /DB_XREF=gi:3333822 /DB_XREF=UI-R-C1-kz-c-11-0-UI.s1 /CLONE=UI-R-C1-kz-c-11-0-UI /FEA=EST /CNT=4 /TID=Rn.19352.1 /TIER=ConsEnd /STK=4 /UG=Rn.19352 /UG_TITLE=ESTs AI060045 1377381_at AW252431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252431 /DB_XREF=gi:6596022 /DB_XREF=UI-R-BJ0-adx-d-08-0-UI.s1 /CLONE=UI-R-BJ0-adx-d-08-0-UI /FEA=EST /CNT=4 /TID=Rn.40969.1 /TIER=ConsEnd /STK=4 /UG=Rn.40969 /UG_TITLE=ESTs AW252431 1377382_at BG373618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373618 /DB_XREF=gi:13270155 /DB_XREF=UI-R-CV1-bse-h-08-0-UI.s1 /CLONE=UI-R-CV1-bse-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.73467.1 /TIER=ConsEnd /STK=4 /UG=Rn.73467 /UG_TITLE=ESTs BG373618 1377383_at AA997397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997397 /DB_XREF=gi:4283241 /DB_XREF=UI-R-C0-hq-h-06-0-UI.s1 /CLONE=UI-R-C0-hq-h-06-0-UI /FEA=EST /CNT=4 /TID=Rn.9267.1 /TIER=ConsEnd /STK=4 /UG=Rn.9267 /UG_TITLE=ESTs, Moderately similar to EFS MOUSE EMBRYONAL FYN-ASSOCIATED SUBSTRATE (M.musculus) AA997397 embryonal Fyn-associated substrate Efs 290212 NM_001106033 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded /// 0019904 // protein domain specific binding // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation 1377384_at AI410969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410969 /DB_XREF=gi:4254473 /DB_XREF=EST239262 /CLONE=RKIEE12 /FEA=EST /CNT=4 /TID=Rn.64286.1 /TIER=ConsEnd /STK=4 /UG=Rn.64286 /UG_TITLE=ESTs, Moderately similar to T46295 hypothetical protein DKFZp434G1310.1 (H.sapiens) AI410969 pleckstrin homology domain containing, family H (with MyTH4 domain) member 3 Plekhh3 360634 NM_001037202 0007165 // signal transduction // inferred from electronic annotation 0005856 // cytoskeleton // inferred from electronic annotation 1377385_at BE100015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100015 /DB_XREF=gi:8491900 /DB_XREF=UI-R-BJ1-atr-g-02-0-UI.s1 /CLONE=UI-R-BJ1-atr-g-02-0-UI /FEA=EST /CNT=4 /TID=Rn.17895.1 /TIER=ConsEnd /STK=4 /UG=Rn.17895 /UG_TITLE=ESTs BE100015 Rho GTPase activating protein 27 Arhgap27 303583 NM_198759 0006897 // endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0043089 // positive regulation of Cdc42 GTPase activity // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // inferred from mutant phenotype /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from direct assay /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from direct assay /// 0030675 // Rac GTPase activator activity // inferred from direct assay 1377386_at AI029639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029639 /DB_XREF=gi:4299944 /DB_XREF=UI-R-C0-jg-a-11-0-UI.s1 /CLONE=UI-R-C0-jg-a-11-0-UI /FEA=EST /CNT=4 /TID=Rn.13364.1 /TIER=ConsEnd /STK=4 /UG=Rn.13364 /UG_TITLE=ESTs AI029639 ATPase, Ca++ transporting, type 2C, member 1 Atp2c1 170699 NM_131907 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from mutant phenotype /// 0006816 // calcium ion transport // not recorded /// 0006816 // calcium ion transport // inferred from sequence or structural similarity /// 0006828 // manganese ion transport // not recorded /// 0006828 // manganese ion transport // inferred from sequence or structural similarity /// 0006874 // cellular calcium ion homeostasis // inferred from mutant phenotype /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0008544 // epidermis development // not recorded /// 0008544 // epidermis development // inferred from sequence or structural similarity /// 0016339 // calcium-dependent cell-cell adhesion // not recorded /// 0016339 // calcium-dependent cell-cell adhesion // inferred from sequence or structural similarity /// 0030026 // cellular manganese ion homeostasis // not recorded /// 0030026 // cellular manganese ion homeostasis // inferred from sequence or structural similarity /// 0031532 // actin cytoskeleton reorganization // not recorded /// 0031532 // actin cytoskeleton reorganization // inferred from sequence or structural similarity /// 0032468 // Golgi calcium ion homeostasis // not recorded /// 0032468 // Golgi calcium ion homeostasis // inferred from sequence or structural similarity /// 0032472 // Golgi calcium ion transport // not recorded /// 0032472 // Golgi calcium ion transport // inferred from sequence or structural similarity /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from sequence or structural similarity 0000139 // Golgi membrane // not recorded /// 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005802 // trans-Golgi network // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // inferred from sequence or structural similarity /// 0005388 // calcium-transporting ATPase activity // inferred from direct assay /// 0005388 // calcium-transporting ATPase activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // not recorded /// 0005388 // calcium-transporting ATPase activity // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0015410 // manganese-transporting ATPase activity // not recorded /// 0015410 // manganese-transporting ATPase activity // inferred from sequence or structural similarity /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0030145 // manganese ion binding // not recorded /// 0030145 // manganese ion binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1377387_a_at BF414330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414330 /DB_XREF=gi:11402360 /DB_XREF=UI-R-BJ2-bop-f-06-0-UI.s1 /CLONE=UI-R-BJ2-bop-f-06-0-UI /FEA=EST /CNT=4 /TID=Rn.24479.1 /TIER=ConsEnd /STK=4 /UG=Rn.24479 /UG_TITLE=ESTs BF414330 endothelin-converting enzyme 2 /// endothelin converting enzyme 2-like Ece2 /// LOC100363561 100363561 /// 408243 NM_001002815 /// XM_002724753 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016486 // peptide hormone processing // not recorded /// 0016486 // peptide hormone processing // traceable author statement 0030659 // cytoplasmic vesicle membrane // not recorded 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // traceable author statement /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1377388_at BF394830 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394830 /DB_XREF=gi:11379788 /DB_XREF=UI-R-CA0-bfz-d-11-0-UI.s1 /CLONE=UI-R-CA0-bfz-d-11-0-UI /FEA=EST /CNT=4 /TID=Rn.62956.1 /TIER=ConsEnd /STK=4 /UG=Rn.62956 /UG_TITLE=ESTs BF394830 1377389_at AI145613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145613 /DB_XREF=gi:3667412 /DB_XREF=UI-R-BT0-ps-c-08-0-UI.s1 /CLONE=UI-R-BT0-ps-c-08-0-UI /FEA=EST /CNT=4 /TID=Rn.28553.1 /TIER=ConsEnd /STK=4 /UG=Rn.28553 /UG_TITLE=ESTs AI145613 1377390_at BG381587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381587 /DB_XREF=gi:13306059 /DB_XREF=UI-R-CT0-bud-a-09-0-UI.s1 /CLONE=UI-R-CT0-bud-a-09-0-UI /FEA=EST /CNT=4 /TID=Rn.38581.1 /TIER=ConsEnd /STK=4 /UG=Rn.38581 /UG_TITLE=ESTs, Weakly similar to BACE RAT BETA-SECRETASE PRECURSOR (R.norvegicus) BG381587 beta-site APP-cleaving enzyme 2 Bace2 288227 NM_001002802 0006508 // proteolysis // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0006509 // membrane protein ectodomain proteolysis // inferred from sequence or structural similarity /// 0006509 // membrane protein ectodomain proteolysis // inferred from electronic annotation /// 0042985 // negative regulation of amyloid precursor protein biosynthetic process // not recorded /// 0042985 // negative regulation of amyloid precursor protein biosynthetic process // inferred from sequence or structural similarity /// 0042985 // negative regulation of amyloid precursor protein biosynthetic process // inferred from electronic annotation 0005768 // endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // not recorded /// 0004190 // aspartic-type endopeptidase activity // inferred from sequence or structural similarity /// 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1377391_at BF390552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390552 /DB_XREF=gi:11375398 /DB_XREF=UI-R-CA1-bcc-d-07-0-UI.s1 /CLONE=UI-R-CA1-bcc-d-07-0-UI /FEA=EST /CNT=4 /TID=Rn.57190.1 /TIER=ConsEnd /STK=4 /UG=Rn.57190 /UG_TITLE=ESTs BF390552 1377392_at BF389722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389722 /DB_XREF=gi:11374557 /DB_XREF=UI-R-BS2-bdo-a-07-0-UI.s1 /CLONE=UI-R-BS2-bdo-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.11974.1 /TIER=ConsEnd /STK=4 /UG=Rn.11974 /UG_TITLE=ESTs BF389722 1377393_at H31625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31625 /DB_XREF=gi:977042 /DB_XREF=EST105857 /CLONE=RPCAT84 /FEA=EST /CNT=4 /TID=Rn.17049.1 /TIER=ConsEnd /STK=4 /UG=Rn.17049 /UG_TITLE=ESTs H31625 FERM domain containing 5 Frmd5 311362 XM_001076895 /// XM_230513 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0019898 // extrinsic to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 1377394_at BF387305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387305 /DB_XREF=gi:11372129 /DB_XREF=UI-R-CA1-bbl-h-10-0-UI.s1 /CLONE=UI-R-CA1-bbl-h-10-0-UI /FEA=EST /CNT=4 /TID=Rn.45917.1 /TIER=ConsEnd /STK=4 /UG=Rn.45917 /UG_TITLE=ESTs BF387305 1377395_at AW535261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535261 /DB_XREF=gi:7177636 /DB_XREF=UI-R-C4-alu-f-05-0-UI.s1 /CLONE=UI-R-C4-alu-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.48451.1 /TIER=ConsEnd /STK=4 /UG=Rn.48451 /UG_TITLE=ESTs AW535261 1377396_at BF413101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413101 /DB_XREF=gi:11401090 /DB_XREF=UI-R-CA0-bod-f-10-0-UI.s1 /CLONE=UI-R-CA0-bod-f-10-0-UI /FEA=EST /CNT=4 /TID=Rn.62246.1 /TIER=ConsEnd /STK=4 /UG=Rn.62246 /UG_TITLE=ESTs BF413101 1377397_at BF393128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393128 /DB_XREF=gi:11377988 /DB_XREF=UI-R-CA0-bfp-a-12-0-UI.s1 /CLONE=UI-R-CA0-bfp-a-12-0-UI /FEA=EST /CNT=4 /TID=Rn.61954.1 /TIER=ConsEnd /STK=4 /UG=Rn.61954 /UG_TITLE=ESTs BF393128 similar to hypothetical protein RGD1563440 298301 NM_001100965 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1377398_at BF391031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391031 /DB_XREF=gi:11375878 /DB_XREF=UI-R-CA1-bcf-d-04-0-UI.s1 /CLONE=UI-R-CA1-bcf-d-04-0-UI /FEA=EST /CNT=4 /TID=Rn.61589.1 /TIER=ConsEnd /STK=4 /UG=Rn.61589 /UG_TITLE=ESTs BF391031 1377399_at BF400800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400800 /DB_XREF=gi:11388815 /DB_XREF=UI-R-CA0-bhg-d-04-0-UI.s1 /CLONE=UI-R-CA0-bhg-d-04-0-UI /FEA=EST /CNT=4 /TID=Rn.59655.1 /TIER=ConsEnd /STK=4 /UG=Rn.59655 /UG_TITLE=ESTs BF400800 1377400_at BF391890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391890 /DB_XREF=gi:11376746 /DB_XREF=UI-R-CA1-bcy-g-07-0-UI.s1 /CLONE=UI-R-CA1-bcy-g-07-0-UI /FEA=EST /CNT=4 /TID=Rn.57629.1 /TIER=ConsEnd /STK=4 /UG=Rn.57629 /UG_TITLE=ESTs BF391890 HIV-1 Rev binding protein 2 Hrb2 314830 NM_001108094 0003723 // RNA binding // inferred from electronic annotation 1377401_at AW251120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251120 /DB_XREF=gi:6594731 /DB_XREF=UI-R-BJ0-adi-f-03-0-UI.s1 /CLONE=UI-R-BJ0-adi-f-03-0-UI /FEA=EST /CNT=4 /TID=Rn.44714.1 /TIER=ConsEnd /STK=4 /UG=Rn.44714 /UG_TITLE=ESTs AW251120 1377402_at BI296989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296989 /DB_XREF=gi:14961956 /DB_XREF=UI-R-DK0-cgj-h-09-0-UI.s1 /CLONE=UI-R-DK0-cgj-h-09-0-UI /FEA=EST /CNT=4 /TID=Rn.20472.1 /TIER=ConsEnd /STK=4 /UG=Rn.20472 /UG_TITLE=ESTs BI296989 cyclin-dependent kinase 10 Cdk10 361434 NM_001025722 /// NM_001109936 /// NM_001109937 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1377403_at BF563390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563390 /DB_XREF=gi:11673120 /DB_XREF=UI-R-BO1-aiw-c-09-0-UI.r1 /CLONE=UI-R-BO1-aiw-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.46031.1 /TIER=ConsEnd /STK=4 /UG=Rn.46031 /UG_TITLE=ESTs BF563390 1377404_at BM386683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386683 /DB_XREF=gi:18186736 /DB_XREF=UI-R-CN1-cjg-n-23-0-UI.s1 /CLONE=UI-R-CN1-cjg-n-23-0-UI /FEA=EST /CNT=4 /TID=Rn.21223.1 /TIER=ConsEnd /STK=4 /UG=Rn.21223 /UG_TITLE=ESTs BM386683 stanniocalcin 1 Stc1 81801 NM_031123 0001503 // ossification // inferred from direct assay /// 0006874 // cellular calcium ion homeostasis // traceable author statement /// 0007566 // embryo implantation // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0033280 // response to vitamin D // inferred from expression pattern /// 0046697 // decidualization // inferred from expression pattern /// 0071320 // cellular response to cAMP // inferred from expression pattern /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay 0005179 // hormone activity // inferred from electronic annotation 1377405_at BM387133 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387133 /DB_XREF=gi:18187186 /DB_XREF=UI-R-CN1-cji-d-11-0-UI.s1 /CLONE=UI-R-CN1-cji-d-11-0-UI /FEA=EST /CNT=4 /TID=Rn.40904.1 /TIER=ConsEnd /STK=4 /UG=Rn.40904 /UG_TITLE=ESTs BM387133 1377406_at BI275251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275251 /DB_XREF=gi:14886912 /DB_XREF=UI-R-CX0-bwr-d-01-0-UI.s1 /CLONE=UI-R-CX0-bwr-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.26569.1 /TIER=ConsEnd /STK=4 /UG=Rn.26569 /UG_TITLE=ESTs BI275251 1377407_at BI290154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290154 /DB_XREF=gi:14948460 /DB_XREF=UI-R-DK0-cfs-g-07-0-UI.s1 /CLONE=UI-R-DK0-cfs-g-07-0-UI /FEA=EST /CNT=4 /TID=Rn.35367.1 /TIER=ConsEnd /STK=4 /UG=Rn.35367 /UG_TITLE=ESTs, Weakly similar to A61209 hypertension-associated protein SA - rat (R.norvegicus) BI290154 acyl-CoA synthetase medium-chain family member 5 Acsm5 361637 NM_001014162 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047760 // butyrate-CoA ligase activity // inferred from electronic annotation 1377408_at AW251242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251242 /DB_XREF=gi:6594833 /DB_XREF=UI-R-BJ0-adf-h-05-0-UI.s1 /CLONE=UI-R-BJ0-adf-h-05-0-UI /FEA=EST /CNT=4 /TID=Rn.64793.1 /TIER=ConsEnd /STK=4 /UG=Rn.64793 /UG_TITLE=ESTs AW251242 phospholipase A2, group VI (cytosolic, calcium-independent) Pla2g6 360426 NM_001005560 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0032049 // cardiolipin biosynthetic process // inferred from electronic annotation /// 0032049 // cardiolipin biosynthetic process // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded 0004623 // phospholipase A2 activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0047499 // calcium-independent phospholipase A2 activity // inferred from direct assay 1377409_at BE114634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114634 /DB_XREF=gi:8506739 /DB_XREF=UI-R-BJ1-awn-d-10-0-UI.s1 /CLONE=UI-R-BJ1-awn-d-10-0-UI /FEA=EST /CNT=4 /TID=Rn.35140.1 /TIER=ConsEnd /STK=4 /UG=Rn.35140 /UG_TITLE=ESTs, Weakly similar to T32638 hypothetical protein F42G8.6 - Caenorhabditis elegans (C.elegans) BE114634 Molybdenum cofactor synthesis 3 Mocs3 311655 NM_001107804 0002098 // tRNA wobble uridine modification // not recorded /// 0006777 // Mo-molybdopterin cofactor biosynthetic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0018192 // enzyme active site formation via L-cysteine persulfide // not recorded /// 0034227 // tRNA thio-modification // not recorded 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004792 // thiosulfate sulfurtransferase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // not recorded /// 0016783 // sulfurtransferase activity // not recorded /// 0042292 // URM1 activating enzyme activity // not recorded 1377410_at AI231053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231053 /DB_XREF=gi:3814933 /DB_XREF=EST227741 /CLONE=REMDE68 /FEA=EST /CNT=4 /TID=Rn.15287.1 /TIER=ConsEnd /STK=4 /UG=Rn.15287 /UG_TITLE=ESTs AI231053 E2F transcription factor 8 E2f8 308607 XM_001080259 /// XM_218601 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1377411_at BF404135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404135 /DB_XREF=gi:11392110 /DB_XREF=UI-R-CA1-biw-h-22-0-UI.s1 /CLONE=UI-R-CA1-biw-h-22-0-UI /FEA=EST /CNT=4 /TID=Rn.60219.1 /TIER=ConsEnd /STK=4 /UG=Rn.60219 /UG_TITLE=ESTs BF404135 1377412_at AI146237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146237 /DB_XREF=gi:3668036 /DB_XREF=UI-R-BT0-qh-c-11-0-UI.s1 /CLONE=UI-R-BT0-qh-c-11-0-UI /FEA=EST /CNT=4 /TID=Rn.22217.1 /TIER=ConsEnd /STK=4 /UG=Rn.22217 /UG_TITLE=ESTs AI146237 1377413_at BF548480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548480 /DB_XREF=gi:11639587 /DB_XREF=UI-R-A0-ao-h-02-0-UI.r1 /CLONE=UI-R-A0-ao-h-02-0-UI /FEA=EST /CNT=4 /TID=Rn.2370.1 /TIER=ConsEnd /STK=4 /UG=Rn.2370 /UG_TITLE=ESTs BF548480 1377414_at BF400262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400262 /DB_XREF=gi:11385273 /DB_XREF=UI-R-CA1-bjc-j-15-0-UI.s1 /CLONE=UI-R-CA1-bjc-j-15-0-UI /FEA=EST /CNT=4 /TID=Rn.45195.1 /TIER=ConsEnd /STK=4 /UG=Rn.45195 /UG_TITLE=ESTs BF400262 similar to DNA segment, Chr 19, ERATO Doi 386, expressed RGD1307934 293953 XM_001055620 /// XM_219870 0000166 // nucleotide binding // inferred from electronic annotation 1377415_at BE096334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096334 /DB_XREF=gi:8487265 /DB_XREF=UI-R-BU0-ape-g-11-0-UI.s1 /CLONE=UI-R-BU0-ape-g-11-0-UI /FEA=EST /CNT=4 /TID=Rn.45666.1 /TIER=ConsEnd /STK=4 /UG=Rn.45666 /UG_TITLE=ESTs, Weakly similar to S64906 hypothetical protein YLR074c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BE096334 1377416_at BG378778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378778 /DB_XREF=gi:13303250 /DB_XREF=UI-R-CV1-bvs-g-03-0-UI.s1 /CLONE=UI-R-CV1-bvs-g-03-0-UI /FEA=EST /CNT=4 /TID=Rn.66602.1 /TIER=ConsEnd /STK=4 /UG=Rn.66602 /UG_TITLE=ESTs BG378778 1377417_at BE099931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099931 /DB_XREF=gi:8491815 /DB_XREF=UI-R-BJ1-atl-g-09-0-UI.s1 /CLONE=UI-R-BJ1-atl-g-09-0-UI /FEA=EST /CNT=4 /TID=Rn.21528.1 /TIER=ConsEnd /STK=4 /UG=Rn.21528 /UG_TITLE=ESTs BE099931 Similar to TICAM-1 LOC363328 363328 XR_007893 /// XR_086352 1377418_at AI411724 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411724 /DB_XREF=gi:4255228 /DB_XREF=EST240018 /CLONE=RPLDJ44 /FEA=EST /CNT=4 /TID=Rn.38854.1 /TIER=ConsEnd /STK=4 /UG=Rn.38854 /UG_TITLE=ESTs AI411724 1377419_at BE118459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118459 /DB_XREF=gi:8510564 /DB_XREF=UI-R-BJ1-azp-h-02-0-UI.s1 /CLONE=UI-R-BJ1-azp-h-02-0-UI /FEA=EST /CNT=4 /TID=Rn.45951.1 /TIER=ConsEnd /STK=4 /UG=Rn.45951 /UG_TITLE=ESTs BE118459 Hypothetical protein LOC689128 LOC689128 689128 XM_001069645 /// XM_001074270 1377420_at BE106848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106848 /DB_XREF=gi:8498950 /DB_XREF=UI-R-BT1-ast-h-07-0-UI.s1 /CLONE=UI-R-BT1-ast-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.46946.1 /TIER=ConsEnd /STK=4 /UG=Rn.46946 /UG_TITLE=ESTs, Weakly similar to T12515 hypothetical protein DKFZp434B103.1 (H.sapiens) BE106848 tubulin tyrosine ligase-like family, member 3 Ttll3 362415 NM_001108640 0006464 // protein modification process // inferred from electronic annotation /// 0018094 // protein polyglycylation // not recorded 0005929 // cilium // not recorded /// 0015630 // microtubule cytoskeleton // not recorded /// 0035085 // cilium axoneme // not recorded 0004835 // tubulin-tyrosine ligase activity // inferred from electronic annotation /// 0070735 // protein-glycine ligase activity // not recorded /// 0070736 // protein-glycine ligase activity, initiating // not recorded 1377421_at BF562337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562337 /DB_XREF=gi:11672067 /DB_XREF=UI-R-BU0-anc-d-02-0-UI.r1 /CLONE=UI-R-BU0-anc-d-02-0-UI /FEA=EST /CNT=4 /TID=Rn.48180.1 /TIER=ConsEnd /STK=4 /UG=Rn.48180 /UG_TITLE=ESTs BF562337 1377422_at AI029466 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029466 /DB_XREF=gi:4298760 /DB_XREF=UI-R-C0-ir-h-06-0-UI.s1 /CLONE=UI-R-C0-ir-h-06-0-UI /FEA=EST /CNT=4 /TID=Rn.18231.1 /TIER=ConsEnd /STK=4 /UG=Rn.18231 /UG_TITLE=ESTs AI029466 Myotubularin related protein 1 Mtmr1 317296 NM_001191725 /// XM_001059230 /// XM_228644 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded 0004438 // phosphatidylinositol-3-phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1377423_at AW526335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526335 /DB_XREF=gi:7168720 /DB_XREF=UI-R-BO1-ajb-a-03-0-UI.s1 /CLONE=UI-R-BO1-ajb-a-03-0-UI /FEA=EST /CNT=4 /TID=Rn.46168.1 /TIER=ConsEnd /STK=4 /UG=Rn.46168 /UG_TITLE=ESTs AW526335 1377424_at AI712672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712672 /DB_XREF=gi:5016472 /DB_XREF=UI-R-AF1-aau-b-10-0-UI.s1 /CLONE=UI-R-AF1-aau-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.14583.1 /TIER=ConsEnd /STK=4 /UG=Rn.14583 /UG_TITLE=ESTs AI712672 Deoxyuridine triphosphatase Dut 497778 NM_001040271 /// NM_053592 0006226 // dUMP biosynthetic process // inferred from direct assay /// 0009117 // nucleotide metabolic process // inferred from electronic annotation /// 0046080 // dUTP metabolic process // inferred from electronic annotation /// 0046081 // dUTP catabolic process // inferred from direct assay 0005634 // nucleus // inferred from expression pattern /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from expression pattern /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0004170 // dUTP diphosphatase activity // inferred from direct assay /// 0004170 // dUTP diphosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030547 // receptor inhibitor activity // inferred from direct assay /// 0032556 // pyrimidine deoxyribonucleotide binding // inferred from direct assay /// 0042975 // peroxisome proliferator activated receptor binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1377425_at AI010551 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010551 /DB_XREF=gi:3224383 /DB_XREF=EST205002 /CLONE=RMUAO33 /FEA=EST /CNT=4 /TID=Rn.36118.1 /TIER=ConsEnd /STK=4 /UG=Rn.36118 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) AI010551 Zinc finger and BTB domain containing 2 Zbtb2 308126 NM_001107460 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377426_at BF403541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403541 /DB_XREF=gi:11391516 /DB_XREF=UI-R-CA1-biz-a-03-0-UI.s1 /CLONE=UI-R-CA1-biz-a-03-0-UI /FEA=EST /CNT=4 /TID=Rn.62970.1 /TIER=ConsEnd /STK=4 /UG=Rn.62970 /UG_TITLE=ESTs BF403541 1377427_at BE104739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104739 /DB_XREF=gi:8496839 /DB_XREF=UI-R-BX0-art-a-03-0-UI.s1 /CLONE=UI-R-BX0-art-a-03-0-UI /FEA=EST /CNT=4 /TID=Rn.74804.1 /TIER=ConsEnd /STK=4 /UG=Rn.74804 /UG_TITLE=ESTs BE104739 Protein tyrosine phosphatase, non-receptor type 14 Ptpn14 305064 NM_001107200 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0005856 // cytoskeleton // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1377428_at AI704656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI704656 /DB_XREF=gi:4992556 /DB_XREF=UI-R-AB1-yw-g-01-0-UI.s1 /CLONE=UI-R-AB1-yw-g-01-0-UI /FEA=EST /CNT=4 /TID=Rn.41232.1 /TIER=ConsEnd /STK=4 /UG=Rn.41232 /UG_TITLE=ESTs, Weakly similar to LAMININ BETA-2 CHAIN PRECURSOR (R.norvegicus) AI704656 laminin, alpha 5 Lama5 140433 NM_001191609 /// XM_001060527 /// XM_215963 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001738 // morphogenesis of a polarized epithelium // inferred from electronic annotation /// 0001738 // morphogenesis of a polarized epithelium // not recorded /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0001942 // hair follicle development // inferred from electronic annotation /// 0001942 // hair follicle development // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // not recorded /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007517 // muscle organ development // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0016331 // morphogenesis of embryonic epithelium // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0034446 // substrate adhesion-dependent cell spreading // inferred from electronic annotation /// 0034446 // substrate adhesion-dependent cell spreading // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042384 // cilium assembly // inferred from electronic annotation /// 0042384 // cilium assembly // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0048754 // branching morphogenesis of a tube // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // not recorded 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005604 // basement membrane // inferred from electronic annotation /// 0005605 // basal lamina // inferred from electronic annotation /// 0005605 // basal lamina // not recorded /// 0005610 // laminin-5 complex // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded /// 0043259 // laminin-10 complex // inferred from electronic annotation /// 0043259 // laminin-10 complex // not recorded 0005178 // integrin binding // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1377429_at BI292231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292231 /DB_XREF=gi:14952524 /DB_XREF=UI-R-DN0-civ-a-08-0-UI.s1 /CLONE=UI-R-DN0-civ-a-08-0-UI /FEA=EST /CNT=4 /TID=Rn.60583.1 /TIER=ConsEnd /STK=4 /UG=Rn.60583 /UG_TITLE=ESTs BI292231 lactoperoxidase Lpo 287610 NM_001105829 0006979 // response to oxidative stress // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0004601 // peroxidase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation 1377430_at BF413556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413556 /DB_XREF=gi:11401545 /DB_XREF=UI-R-CA0-bof-f-07-0-UI.s1 /CLONE=UI-R-CA0-bof-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.19694.1 /TIER=ConsEnd /STK=4 /UG=Rn.19694 /UG_TITLE=ESTs BF413556 1377431_at BE106000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106000 /DB_XREF=gi:8498102 /DB_XREF=UI-R-BX0-asc-f-11-0-UI.s1 /CLONE=UI-R-BX0-asc-f-11-0-UI /FEA=EST /CNT=4 /TID=Rn.50057.1 /TIER=ConsEnd /STK=4 /UG=Rn.50057 /UG_TITLE=ESTs BE106000 similar to CG13901-PA RGD1307648 294004 NM_001013905 0005515 // protein binding // inferred from electronic annotation 1377432_at BF406938 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406938 /DB_XREF=gi:11394953 /DB_XREF=UI-R-BJ2-bpq-c-06-0-UI.s1 /CLONE=UI-R-BJ2-bpq-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.62493.1 /TIER=ConsEnd /STK=4 /UG=Rn.62493 /UG_TITLE=ESTs BF406938 1377433_at BG376195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376195 /DB_XREF=gi:13300667 /DB_XREF=UI-R-CT0-bun-f-03-0-UI.s1 /CLONE=UI-R-CT0-bun-f-03-0-UI /FEA=EST /CNT=4 /TID=Rn.6984.1 /TIER=ConsEnd /STK=4 /UG=Rn.6984 /UG_TITLE=ESTs BG376195 zinc finger protein 580 Znf580 308336 XM_001072400 /// XM_218196 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1377434_at BG374415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374415 /DB_XREF=gi:13298887 /DB_XREF=UI-R-CV1-bsp-b-06-0-UI.s1 /CLONE=UI-R-CV1-bsp-b-06-0-UI /FEA=EST /CNT=4 /TID=Rn.20302.1 /TIER=ConsEnd /STK=4 /UG=Rn.20302 /UG_TITLE=ESTs, Weakly similar to FZD2_RAT Frizzled 2 precursor (Frizzled-2) (Fz-2) (rFz2) (R.norvegicus) BG374415 membrane frizzled-related protein Mfrp 315597 NM_001108137 0007601 // visual perception // not recorded 1377435_at BF401680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401680 /DB_XREF=gi:11389655 /DB_XREF=UI-R-CA0-bgn-d-08-0-UI.s1 /CLONE=UI-R-CA0-bgn-d-08-0-UI /FEA=EST /CNT=4 /TID=Rn.59708.1 /TIER=ConsEnd /STK=4 /UG=Rn.59708 /UG_TITLE=ESTs BF401680 1377436_at BE108338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108338 /DB_XREF=gi:8500443 /DB_XREF=UI-R-BS1-ayv-b-03-0-UI.s1 /CLONE=UI-R-BS1-ayv-b-03-0-UI /FEA=EST /CNT=4 /TID=Rn.11943.1 /TIER=ConsEnd /STK=4 /UG=Rn.11943 /UG_TITLE=ESTs BE108338 G patch domain containing 1 Gpatch1 292810 NM_001106246 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation 1377437_at AI013299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013299 /DB_XREF=gi:3227355 /DB_XREF=EST207974 /CLONE=RSPBJ22 /FEA=EST /CNT=4 /TID=Rn.17986.1 /TIER=ConsEnd /STK=4 /UG=Rn.17986 /UG_TITLE=ESTs AI013299 similar to VEPH isoform A /// ventricular zone expressed PH domain homolog 1 (zebrafish) RGD1565184 /// Veph1 361954 /// 502705 NM_001014171 /// XM_578205 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1377438_at BE095820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095820 /DB_XREF=gi:8486751 /DB_XREF=UI-R-BU0-aoz-h-08-0-UI.s1 /CLONE=UI-R-BU0-aoz-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.44964.1 /TIER=ConsEnd /STK=4 /UG=Rn.44964 /UG_TITLE=ESTs, Weakly similar to A61216 transforming protein rap1b - rat (R.norvegicus) BE095820 DIRAS family, GTP-binding RAS-like 1 Diras1 366826 NM_001108987 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1377439_at BF408617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408617 /DB_XREF=gi:11396592 /DB_XREF=UI-R-BJ2-brf-h-03-0-UI.s1 /CLONE=UI-R-BJ2-brf-h-03-0-UI /FEA=EST /CNT=4 /TID=Rn.48110.1 /TIER=ConsEnd /STK=4 /UG=Rn.48110 /UG_TITLE=ESTs BF408617 similar to hypothetical protein FLJ13231 RGD1310081 310137 XM_001056541 /// XM_001081956 1377440_at BG375500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375500 /DB_XREF=gi:13299972 /DB_XREF=UI-R-CV1-btc-a-08-0-UI.s1 /CLONE=UI-R-CV1-btc-a-08-0-UI /FEA=EST /CNT=4 /TID=Rn.42318.1 /TIER=ConsEnd /STK=4 /UG=Rn.42318 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BG375500 1377441_at BF412649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412649 /DB_XREF=gi:11400638 /DB_XREF=UI-R-BT1-bnq-d-06-0-UI.s1 /CLONE=UI-R-BT1-bnq-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.51706.1 /TIER=ConsEnd /STK=4 /UG=Rn.51706 /UG_TITLE=ESTs BF412649 1377442_at BF409997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409997 /DB_XREF=gi:11397972 /DB_XREF=UI-R-CA0-bjs-c-08-0-UI.s1 /CLONE=UI-R-CA0-bjs-c-08-0-UI /FEA=EST /CNT=4 /TID=Rn.45278.1 /TIER=ConsEnd /STK=4 /UG=Rn.45278 /UG_TITLE=ESTs BF409997 1377443_at BF401187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401187 /DB_XREF=gi:11389162 /DB_XREF=UI-R-CA0-bgj-f-05-0-UI.s1 /CLONE=UI-R-CA0-bgj-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.59746.1 /TIER=ConsEnd /STK=4 /UG=Rn.59746 /UG_TITLE=ESTs BF401187 1377444_at BE120680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120680 /DB_XREF=gi:8512785 /DB_XREF=UI-R-CA0-bay-c-09-0-UI.s1 /CLONE=UI-R-CA0-bay-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.1309.2 /TIER=ConsEnd /STK=4 /UG=Rn.1309 /UG_TITLE=ESTs BE120680 1377445_at BF388223 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388223 /DB_XREF=gi:11373047 /DB_XREF=UI-R-CA1-bca-g-04-0-UI.s1 /CLONE=UI-R-CA1-bca-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.59831.1 /TIER=ConsEnd /STK=4 /UG=Rn.59831 /UG_TITLE=ESTs BF388223 Similar to GTL2, imprinted maternally expressed untranslated RGD1566401 500717 XR_008690 /// XR_086281 1377446_at BF409122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409122 /DB_XREF=gi:11397097 /DB_XREF=UI-R-BT1-bkm-c-04-0-UI.s1 /CLONE=UI-R-BT1-bkm-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.61256.1 /TIER=ConsEnd /STK=4 /UG=Rn.61256 /UG_TITLE=ESTs BF409122 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 Plekha8 500132 NM_001109235 0046836 // glycolipid transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0017089 // glycolipid transporter activity // inferred from electronic annotation /// 0051861 // glycolipid binding // inferred from electronic annotation 1377447_at BF411138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411138 /DB_XREF=gi:11399113 /DB_XREF=UI-R-BT1-bmm-d-05-0-UI.s1 /CLONE=UI-R-BT1-bmm-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.61804.1 /TIER=ConsEnd /STK=4 /UG=Rn.61804 /UG_TITLE=ESTs BF411138 1377448_at BG374556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374556 /DB_XREF=gi:13299068 /DB_XREF=UI-R-CV1-bta-c-02-0-UI.s1 /CLONE=UI-R-CV1-bta-c-02-0-UI /FEA=EST /CNT=4 /TID=Rn.66154.1 /TIER=ConsEnd /STK=4 /UG=Rn.66154 /UG_TITLE=ESTs BG374556 transmembrane protein 38a Tmem38a 306327 NM_001100175 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0015672 // monovalent inorganic cation transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0033017 // sarcoplasmic reticulum membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation 1377449_at AI073141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073141 /DB_XREF=gi:3399335 /DB_XREF=UI-R-Y0-mi-b-10-0-UI.s1 /CLONE=UI-R-Y0-mi-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.20370.1 /TIER=ConsEnd /STK=4 /UG=Rn.20370 /UG_TITLE=ESTs AI073141 poliovirus receptor-related 4 Pvrl4 498281 NM_001109076 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1377450_s_at AI073141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073141 /DB_XREF=gi:3399335 /DB_XREF=UI-R-Y0-mi-b-10-0-UI.s1 /CLONE=UI-R-Y0-mi-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.20370.1 /TIER=ConsEnd /STK=4 /UG=Rn.20370 /UG_TITLE=ESTs AI073141 poliovirus receptor-related 4 Pvrl4 498281 NM_001109076 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1377451_at AI599250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599250 /DB_XREF=gi:4608298 /DB_XREF=EST250953 /CLONE=REMEP51 /FEA=EST /CNT=4 /TID=Rn.23783.1 /TIER=ConsEnd /STK=4 /UG=Rn.23783 /UG_TITLE=ESTs AI599250 Similar to c-Mpl binding protein RGD1305704 307452 XR_006033 /// XR_007483 1377452_at AW251280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251280 /DB_XREF=gi:6594871 /DB_XREF=UI-R-BJ0-adg-d-01-0-UI.s1 /CLONE=UI-R-BJ0-adg-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.23478.1 /TIER=ConsEnd /STK=4 /UG=Rn.23478 /UG_TITLE=ESTs, Highly similar to TETN MOUSE TETRANECTIN PRECURSOR (M.musculus) AW251280 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1377453_at BF408816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408816 /DB_XREF=gi:11396791 /DB_XREF=UI-R-BT1-bne-g-03-0-UI.s1 /CLONE=UI-R-BT1-bne-g-03-0-UI /FEA=EST /CNT=4 /TID=Rn.51476.1 /TIER=ConsEnd /STK=4 /UG=Rn.51476 /UG_TITLE=ESTs BF408816 similar to hypothetical protein FLJ23554 RGD1309108 315578 XM_001064888 /// XM_236102 1377454_at AW524041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524041 /DB_XREF=gi:7166391 /DB_XREF=UI-R-BJ0p-aik-e-01-0-UI.s1 /CLONE=UI-R-BJ0p-aik-e-01-0-UI /FEA=EST /CNT=4 /TID=Rn.15118.1 /TIER=ConsEnd /STK=4 /UG=Rn.15118 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) AW524041 zinc finger and BTB domain containing 9 Zbtb9 294289 NM_213564 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377455_at BE106526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106526 /DB_XREF=gi:8498628 /DB_XREF=UI-R-BO1-asp-a-08-0-UI.s1 /CLONE=UI-R-BO1-asp-a-08-0-UI /FEA=EST /CNT=4 /TID=Rn.7622.1 /TIER=ConsEnd /STK=4 /UG=Rn.7622 /UG_TITLE=ESTs BE106526 1377456_at BE116775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116775 /DB_XREF=gi:8508880 /DB_XREF=UI-R-BS1-ayf-b-06-0-UI.s1 /CLONE=UI-R-BS1-ayf-b-06-0-UI /FEA=EST /CNT=4 /TID=Rn.7661.1 /TIER=ConsEnd /STK=4 /UG=Rn.7661 /UG_TITLE=ESTs BE116775 1377457_a_at AA850618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850618 /DB_XREF=gi:4131865 /DB_XREF=EST193386 /FEA=EST /CNT=4 /TID=Rn.25122.1 /TIER=ConsEnd /STK=4 /UG=Rn.25122 /UG_TITLE=ESTs, Highly similar to T09123 hybrid receptor SorLA precursor - mouse (M.musculus) AA850618 sortilin-related receptor, LDLR class A repeats-containing Sorl1 300652 NM_053519 /// XM_001065506 /// XM_217115 0008283 // cell proliferation // inferred from expression pattern /// 0016477 // cell migration // inferred from mutant phenotype 0005771 // multivesicular body // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay 0030169 // low-density lipoprotein binding // not recorded 1377458_at AA850618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850618 /DB_XREF=gi:4131865 /DB_XREF=EST193386 /FEA=EST /CNT=4 /TID=Rn.25122.1 /TIER=ConsEnd /STK=4 /UG=Rn.25122 /UG_TITLE=ESTs, Highly similar to T09123 hybrid receptor SorLA precursor - mouse (M.musculus) AA850618 sortilin-related receptor, LDLR class A repeats-containing Sorl1 300652 NM_053519 /// XM_001065506 /// XM_217115 0008283 // cell proliferation // inferred from expression pattern /// 0016477 // cell migration // inferred from mutant phenotype 0005771 // multivesicular body // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay 0030169 // low-density lipoprotein binding // not recorded 1377459_at AI764114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764114 /DB_XREF=gi:5210049 /DB_XREF=UI-R-Y0-acr-a-04-0-UI.s1 /CLONE=UI-R-Y0-acr-a-04-0-UI /FEA=EST /CNT=4 /TID=Rn.41594.1 /TIER=ConsEnd /STK=4 /UG=Rn.41594 /UG_TITLE=ESTs AI764114 lymphocyte antigen 6 complex, locus G6E Ly6g6e 406866 NM_001001972 0016020 // membrane // inferred from electronic annotation 0004675 // transmembrane receptor protein serine/threonine kinase activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta receptor activity // inferred from electronic annotation 1377460_at BM383995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383995 /DB_XREF=gi:18184048 /DB_XREF=UI-R-DM1-ckb-a-22-0-UI.s1 /CLONE=UI-R-DM1-ckb-a-22-0-UI /FEA=EST /CNT=4 /TID=Rn.77696.1 /TIER=ConsEnd /STK=4 /UG=Rn.77696 /UG_TITLE=ESTs BM383995 1377461_at AI409983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409983 /DB_XREF=gi:4253487 /DB_XREF=EST238276 /CLONE=RKIDX82 /FEA=EST /CNT=4 /TID=Rn.25200.1 /TIER=ConsEnd /STK=4 /UG=Rn.25200 /UG_TITLE=ESTs AI409983 1377462_at BE111349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111349 /DB_XREF=gi:8503454 /DB_XREF=UI-R-BJ1-ava-g-04-0-UI.s1 /CLONE=UI-R-BJ1-ava-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.43707.1 /TIER=ConsEnd /STK=4 /UG=Rn.43707 /UG_TITLE=ESTs BE111349 1377463_at BE099244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099244 /DB_XREF=gi:8491120 /DB_XREF=UI-R-BJ1-aub-a-07-0-UI.s1 /CLONE=UI-R-BJ1-aub-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.27085.1 /TIER=ConsEnd /STK=4 /UG=Rn.27085 /UG_TITLE=ESTs BE099244 Mannosidase 2, alpha 2 Man2a2 308757 NM_001107527 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006013 // mannose metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004559 // alpha-mannosidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation 1377464_at BF402138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402138 /DB_XREF=gi:11390077 /DB_XREF=UI-R-CA0-bhw-a-02-0-UI.s1 /CLONE=UI-R-CA0-bhw-a-02-0-UI /FEA=EST /CNT=4 /TID=Rn.43162.1 /TIER=ConsEnd /STK=4 /UG=Rn.43162 /UG_TITLE=ESTs BF402138 1377465_at AI407752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407752 /DB_XREF=gi:4251256 /DB_XREF=EST236042 /CLONE=ROVEA22 /FEA=EST /CNT=4 /TID=Rn.12465.1 /TIER=ConsEnd /STK=4 /UG=Rn.12465 /UG_TITLE=ESTs AI407752 1377466_a_at AA849974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849974 /DB_XREF=gi:4131780 /DB_XREF=EST192741 /CLONE=RMUAL28 /FEA=EST /CNT=4 /TID=Rn.6536.2 /TIER=ConsEnd /STK=3 /UG=Rn.6536 /UG_TITLE=ESTs AA849974 Similar to tyrosine kinase-associated leucine zipper protein LAZipII RGD1565584 293112 NM_001106279 0006350 // transcription // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0009615 // response to virus // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0045814 // negative regulation of gene expression, epigenetic // not recorded /// 0051090 // regulation of transcription factor activity // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1377467_at AA997044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997044 /DB_XREF=gi:4280807 /DB_XREF=UI-R-C0-hk-b-11-0-UI.s1 /CLONE=UI-R-C0-hk-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.25110.1 /TIER=ConsEnd /STK=4 /UG=Rn.25110 /UG_TITLE=ESTs, Highly similar to SMA6_MOUSE MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG 6 (SMAD 6) (MOTHERS AGAINST DPP HOMOLOG 6) (SMAD6) (MAD HOMOLOG 7) (M.musculus) AA997044 SMAD family member 6 Smad6 367100 NM_001109002 0001657 // ureteric bud development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006955 // immune response // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007352 // zygotic specification of dorsal/ventral axis // not recorded /// 0010991 // negative regulation of SMAD protein complex assembly // not recorded /// 0030509 // BMP signaling pathway // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0034616 // response to laminar fluid shear stress // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043154 // negative regulation of caspase activity // not recorded /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045750 // positive regulation of S phase of mitotic cell cycle // not recorded /// 0060394 // negative regulation of pathway-restricted SMAD protein phosphorylation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030617 // transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity // not recorded /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0034713 // type I transforming growth factor beta receptor binding // not recorded /// 0070410 // co-SMAD binding // not recorded /// 0070411 // I-SMAD binding // not recorded /// 0070412 // R-SMAD binding // not recorded /// 0070698 // type I activin receptor binding // not recorded 1377468_at BF404521 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404521 /DB_XREF=gi:11392536 /DB_XREF=UI-R-CA1-big-h-06-0-UI.s1 /CLONE=UI-R-CA1-big-h-06-0-UI /FEA=EST /CNT=4 /TID=Rn.61379.1 /TIER=ConsEnd /STK=4 /UG=Rn.61379 /UG_TITLE=ESTs BF404521 Dickkopf homolog 3 (Xenopus laevis) Dkk3 171548 NM_138519 0007275 // multicellular organismal development // inferred from electronic annotation /// 0010894 // negative regulation of steroid biosynthetic process // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030325 // adrenal gland development // not recorded /// 0032348 // negative regulation of aldosterone biosynthetic process // not recorded 0005576 // extracellular region // inferred from electronic annotation 0016564 // transcription repressor activity // not recorded 1377469_at AI103161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103161 /DB_XREF=gi:3707733 /DB_XREF=EST212450 /CLONE=REMBX93 /FEA=EST /CNT=4 /TID=Rn.7614.1 /TIER=ConsEnd /STK=4 /UG=Rn.7614 /UG_TITLE=ESTs AI103161 1377470_at AI007863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI007863 /DB_XREF=gi:3221695 /DB_XREF=EST202314 /CLONE=RBRAV85 /FEA=EST /CNT=4 /TID=Rn.22313.1 /TIER=ConsEnd /STK=4 /UG=Rn.22313 /UG_TITLE=ESTs, Weakly similar to YMN0_YEAST HYPOTHETICAL 65.0 KDA PROTEIN IN COX14-COS3 INTERGENIC REGION PRECURSOR (S.cerevisiae) AI007863 hypothetical protein LOC100365339 LOC100365339 100365339 XM_002725309 1377471_s_at AI535533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535533 /DB_XREF=gi:4449668 /DB_XREF=UI-R-C3-ta-a-11-0-UI.s1 /CLONE=UI-R-C3-ta-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.22968.1 /TIER=ConsEnd /STK=3 /UG=Rn.22968 /UG_TITLE=ESTs AI535533 1377472_at BE110173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110173 /DB_XREF=gi:8502278 /DB_XREF=UI-R-BJ1-avf-h-09-0-UI.s1 /CLONE=UI-R-BJ1-avf-h-09-0-UI /FEA=EST /CNT=4 /TID=Rn.50146.1 /TIER=ConsEnd /STK=4 /UG=Rn.50146 /UG_TITLE=ESTs BE110173 exostoses (multiple)-like 1 Extl1 313610 NM_001107985 0016020 // membrane // inferred from electronic annotation /// 0031227 // intrinsic to endoplasmic reticulum membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1377473_at BE349749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE349749 /DB_XREF=gi:9261602 /DB_XREF=hq42e04.x1 /CLONE=IMAGE:3122046 /FEA=EST /CNT=4 /TID=Rn.54035.1 /TIER=ConsEnd /STK=4 /UG=Rn.54035 /UG_TITLE=ESTs, Weakly similar to D15K MOUSE D15KZ1 PROTEIN (M.musculus) BE349749 1377474_at AI007668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI007668 /DB_XREF=gi:3221500 /DB_XREF=EST202119 /CLONE=RBRAS89 /FEA=EST /CNT=4 /TID=Rn.8003.1 /TIER=ConsEnd /STK=4 /UG=Rn.8003 /UG_TITLE=ESTs AI007668 abhydrolase domain containing 13 Abhd13 306630 NM_001107327 1377475_at BI296694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296694 /DB_XREF=gi:14961377 /DB_XREF=UI-R-CV2-cgv-c-03-0-UI.s1 /CLONE=UI-R-CV2-cgv-c-03-0-UI /FEA=EST /CNT=4 /TID=Rn.20429.1 /TIER=ConsEnd /STK=4 /UG=Rn.20429 /UG_TITLE=ESTs BI296694 Plakophilin 2 Pkp2 287925 NM_001100499 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030054 // cell junction // not recorded 0005488 // binding // inferred from electronic annotation 1377476_at AA964086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964086 /DB_XREF=gi:4278962 /DB_XREF=UI-R-C0-gw-d-06-0-UI.s1 /CLONE=UI-R-C0-gw-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.22146.1 /TIER=ConsEnd /STK=4 /UG=Rn.22146 /UG_TITLE=ESTs, Weakly similar to Slit1 (Rattus norvegicus) (R.norvegicus) AA964086 G protein-coupled receptor 125 Gpr125 305408 NM_001107218 0009897 // external side of plasma membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation 1377477_at AI704152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI704152 /DB_XREF=gi:4992052 /DB_XREF=UI-R-AC0-yi-b-12-0-UI.s1 /CLONE=UI-R-AC0-yi-b-12-0-UI /FEA=EST /CNT=4 /TID=Rn.41224.1 /TIER=ConsEnd /STK=4 /UG=Rn.41224 /UG_TITLE=ESTs, Weakly similar to VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV2.2 (R.norvegicus) AI704152 Potassium voltage-gated channel, subfamily G, member 2 Kcng2 307234 NM_001107372 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1377478_at AI511173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511173 /DB_XREF=gi:4416872 /DB_XREF=UI-R-BT0-px-e-09-0-UI.s1 /CLONE=UI-R-BT0-px-e-09-0-UI /FEA=EST /CNT=4 /TID=Rn.53805.1 /TIER=ConsEnd /STK=4 /UG=Rn.53805 /UG_TITLE=ESTs AI511173 1377479_at BI296128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296128 /DB_XREF=gi:14960258 /DB_XREF=UI-R-DK0-cew-f-08-0-UI.s1 /CLONE=UI-R-DK0-cew-f-08-0-UI /FEA=EST /CNT=4 /TID=Rn.6812.1 /TIER=ConsEnd /STK=4 /UG=Rn.6812 /UG_TITLE=ESTs BI296128 1377480_at BF387366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387366 /DB_XREF=gi:11372190 /DB_XREF=UI-R-CA1-bbr-f-02-0-UI.s1 /CLONE=UI-R-CA1-bbr-f-02-0-UI /FEA=EST /CNT=4 /TID=Rn.2147.1 /TIER=ConsEnd /STK=4 /UG=Rn.2147 /UG_TITLE=ESTs, Weakly similar to YNE1_CAEEL HYPOTHETICAL 52.8 KD PROTEIN R08D7.1 IN CHROMOSOME III (C.elegans) BF387366 BUD13 homolog (S. cerevisiae) Bud13 300687 NM_001025277 1377481_at BF396092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396092 /DB_XREF=gi:11381064 /DB_XREF=UI-R-CA1-bcb-c-02-0-UI.s1 /CLONE=UI-R-CA1-bcb-c-02-0-UI /FEA=EST /CNT=4 /TID=Rn.22584.1 /TIER=ConsEnd /STK=4 /UG=Rn.22584 /UG_TITLE=ESTs BF396092 1377482_at AA899068 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899068 /DB_XREF=gi:4231568 /DB_XREF=UI-R-E0-bz-d-01-0-UI.s2 /CLONE=UI-R-E0-bz-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.23100.1 /TIER=ConsEnd /STK=4 /UG=Rn.23100 /UG_TITLE=ESTs AA899068 1377483_at AI234736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234736 /DB_XREF=gi:4136025 /DB_XREF=EST231298 /CLONE=ROVCG95 /FEA=EST /CNT=4 /TID=Rn.25208.1 /TIER=ConsEnd /STK=4 /UG=Rn.25208 /UG_TITLE=ESTs AI234736 1377484_at BE096747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096747 /DB_XREF=gi:8487678 /DB_XREF=UI-R-BU0-apm-c-09-0-UI.s1 /CLONE=UI-R-BU0-apm-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.36356.1 /TIER=ConsEnd /STK=4 /UG=Rn.36356 /UG_TITLE=ESTs BE096747 F-box and leucine-rich repeat protein 3 Fbxl3 306129 NM_001100568 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1377485_at AI144646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144646 /DB_XREF=gi:3666445 /DB_XREF=UI-R-BT0-pl-d-12-0-UI.s1 /CLONE=UI-R-BT0-pl-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.36522.1 /TIER=ConsEnd /STK=4 /UG=Rn.36522 /UG_TITLE=ESTs, Weakly similar to CXA9 RAT GAP JUNCTION ALPHA-9 PROTEIN (R.norvegicus) AI144646 gap junction protein, gamma 2 Gjc2 497913 NM_001100784 /// XM_001076914 /// XM_002727715 /// XM_573100 0007154 // cell communication // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0055085 // transmembrane transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005921 // gap junction // not recorded /// 0005922 // connexon complex // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005243 // gap junction channel activity // not recorded 1377486_at AI548514 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548514 /DB_XREF=gi:4466002 /DB_XREF=UI-R-C3-to-c-05-0-UI.s1 /CLONE=UI-R-C3-to-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.37614.1 /TIER=ConsEnd /STK=4 /UG=Rn.37614 /UG_TITLE=ESTs AI548514 RNA binding motif protein 16 Rbm16 245926 NM_139094 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006397 // mRNA processing // inferred from mutant phenotype /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from direct assay /// 0016363 // nuclear matrix // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from mutant phenotype /// 0043175 // RNA polymerase core enzyme binding // inferred from electronic annotation /// 0070063 // RNA polymerase binding // inferred from physical interaction 1377487_at AI706594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI706594 /DB_XREF=gi:4994494 /DB_XREF=UI-R-AE1-zf-c-12-0-UI.s1 /CLONE=UI-R-AE1-zf-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.39155.1 /TIER=ConsEnd /STK=4 /UG=Rn.39155 /UG_TITLE=ESTs, Highly similar to 1917213A MFH-1 protein (M.musculus) AI706594 Forkhead box C2 Foxc2 171356 NM_001101680 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1377488_at AI575972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575972 /DB_XREF=gi:4560348 /DB_XREF=UI-R-G0-ur-a-11-0-UI.s2 /CLONE=UI-R-G0-ur-a-11-0-UI /FEA=EST /CNT=4 /TID=Rn.40225.1 /TIER=ConsEnd /STK=4 /UG=Rn.40225 /UG_TITLE=ESTs, Highly similar to mitogen activated protein kinase 8 interacting protein 2; JNK-interacting protein (Mus musculus) (M.musculus) AI575972 Mitogen-activated protein kinase 8 interacting protein 2 Mapk8ip2 315220 XM_001055248 /// XM_235565 0000165 // MAPKKK cascade // not recorded /// 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0007254 // JNK cascade // not recorded /// 0007254 // JNK cascade // inferred from electronic annotation /// 0032874 // positive regulation of stress-activated MAPK cascade // inferred from mutant phenotype /// 0046328 // regulation of JNK cascade // inferred from electronic annotation /// 0046328 // regulation of JNK cascade // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0030295 // protein kinase activator activity // inferred from electronic annotation /// 0030295 // protein kinase activator activity // not recorded /// 0032403 // protein complex binding // inferred from direct assay 1377489_at AI703710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI703710 /DB_XREF=gi:4991610 /DB_XREF=UI-R-AB1-yx-b-08-0-UI.s1 /CLONE=UI-R-AB1-yx-b-08-0-UI /FEA=EST /CNT=4 /TID=Rn.41063.1 /TIER=ConsEnd /STK=4 /UG=Rn.41063 /UG_TITLE=ESTs, Moderately similar to A54962 sterol regulatory element binding protein 2 precursor (H.sapiens) AI703710 Sterol regulatory element binding transcription factor 2 Srebf2 300095 NM_001033694 0006350 // transcription // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // traceable author statement /// 0009725 // response to hormone stimulus // inferred from mutant phenotype /// 0010288 // response to lead ion // inferred from expression pattern /// 0033993 // response to lipid // inferred from expression pattern /// 0035104 // positive regulation of transcription via sterol regulatory element binding // inferred from electronic annotation /// 0035104 // positive regulation of transcription via sterol regulatory element binding // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0012507 // ER to Golgi transport vesicle membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0032937 // SREBP-SCAP-Insig complex // inferred from electronic annotation /// 0032937 // SREBP-SCAP-Insig complex // not recorded 0000247 // C-8 sterol isomerase activity // not recorded /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003704 // specific RNA polymerase II transcription factor activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay 1377490_at BE103482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103482 /DB_XREF=gi:8495581 /DB_XREF=UI-R-BX0-arc-f-02-0-UI.s1 /CLONE=UI-R-BX0-arc-f-02-0-UI /FEA=EST /CNT=4 /TID=Rn.41347.1 /TIER=ConsEnd /STK=4 /UG=Rn.41347 /UG_TITLE=ESTs, Highly similar to TBX1 MOUSE TBX1 PROTEIN (M.musculus) BE103482 T-box 1 Tbx1 360737 NM_001108322 0001525 // angiogenesis // not recorded /// 0001568 // blood vessel development // not recorded /// 0001708 // cell fate specification // not recorded /// 0001755 // neural crest cell migration // not recorded /// 0001974 // blood vessel remodeling // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // not recorded /// 0007389 // pattern specification process // not recorded /// 0007498 // mesoderm development // not recorded /// 0007507 // heart development // not recorded /// 0007517 // muscle organ development // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0008283 // cell proliferation // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0030878 // thyroid gland development // not recorded /// 0035176 // social behavior // not recorded /// 0042471 // ear morphogenesis // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0042473 // outer ear morphogenesis // not recorded /// 0042474 // middle ear morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048514 // blood vessel morphogenesis // not recorded /// 0048538 // thymus development // not recorded /// 0048701 // embryonic cranial skeleton morphogenesis // not recorded /// 0048703 // embryonic viscerocranium morphogenesis // not recorded /// 0048844 // artery morphogenesis // not recorded /// 0060017 // parathyroid gland development // not recorded /// 0060023 // soft palate development // not recorded /// 0060037 // pharyngeal system development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0016563 // transcription activator activity // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // not recorded 1377491_at BE112929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112929 /DB_XREF=gi:8505034 /DB_XREF=UI-R-BJ1-awa-e-03-0-UI.s1 /CLONE=UI-R-BJ1-awa-e-03-0-UI /FEA=EST /CNT=4 /TID=Rn.51821.1 /TIER=ConsEnd /STK=4 /UG=Rn.51821 /UG_TITLE=ESTs BE112929 1377492_at BM387395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387395 /DB_XREF=gi:18187448 /DB_XREF=UI-R-CN1-cjj-k-23-0-UI.s1 /CLONE=UI-R-CN1-cjj-k-23-0-UI /FEA=EST /CNT=4 /TID=Rn.38616.1 /TIER=ConsEnd /STK=4 /UG=Rn.38616 /UG_TITLE=ESTs BM387395 reprimo-like Rprml 685826 NM_001109481 1377493_at BM386301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386301 /DB_XREF=gi:18186354 /DB_XREF=UI-R-CN1-cjf-f-21-0-UI.s1 /CLONE=UI-R-CN1-cjf-f-21-0-UI /FEA=EST /CNT=4 /TID=Rn.23803.1 /TIER=ConsEnd /STK=4 /UG=Rn.23803 /UG_TITLE=ESTs, Moderately similar to YC02_HUMAN HYPOTHETICAL PROTEIN CGI-02 (H.sapiens) BM386301 mitochondrial translation optimization 1 homolog (S. cerevisiae) Mto1 300852 NM_001106841 0002098 // tRNA wobble uridine modification // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1377494_at BE104847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104847 /DB_XREF=gi:8496947 /DB_XREF=UI-R-BX0-aru-d-04-0-UI.s1 /CLONE=UI-R-BX0-aru-d-04-0-UI /FEA=EST /CNT=4 /TID=Rn.41387.1 /TIER=ConsEnd /STK=4 /UG=Rn.41387 /UG_TITLE=ESTs, Highly similar to FLI1 MOUSE RETROVIRAL INTEGRATION SITE PROTEIN FLI-1 (M.musculus) BE104847 Friend leukemia virus integration 1 Fli1 315532 NM_001017381 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0008015 // blood circulation // inferred from electronic annotation /// 0008015 // blood circulation // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1377495_at AA900220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900220 /DB_XREF=gi:4232711 /DB_XREF=UI-R-E0-dd-f-08-0-UI.s1 /CLONE=UI-R-E0-dd-f-08-0-UI /FEA=EST /CNT=4 /TID=Rn.15032.1 /TIER=ConsEnd /STK=4 /UG=Rn.15032 /UG_TITLE=ESTs AA900220 1377496_at BM391768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391768 /DB_XREF=gi:18191821 /DB_XREF=UI-R-DO1-cmk-c-21-0-UI.s1 /CLONE=UI-R-DO1-cmk-c-21-0-UI /FEA=EST /CNT=4 /TID=Rn.41947.1 /TIER=ConsEnd /STK=4 /UG=Rn.41947 /UG_TITLE=ESTs BM391768 cleavage and polyadenylation specific factor 7, 59kDa Cpsf7 365407 NM_001014245 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1377497_at BF419319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419319 /DB_XREF=gi:11407308 /DB_XREF=UI-R-BJ2-bqq-c-01-0-UI.s1 /CLONE=UI-R-BJ2-bqq-c-01-0-UI /FEA=EST /CNT=4 /TID=Rn.7429.1 /TIER=ConsEnd /STK=4 /UG=Rn.7429 /UG_TITLE=ESTs BF419319 2'-5'-oligoadenylate synthetase-like Oasl 304545 NM_001009681 0006955 // immune response // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1377498_at BE100752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100752 /DB_XREF=gi:8492615 /DB_XREF=UI-R-BJ1-atu-e-11-0-UI.s1 /CLONE=UI-R-BJ1-atu-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.36377.1 /TIER=ConsEnd /STK=4 /UG=Rn.36377 /UG_TITLE=ESTs, Highly similar to AMP DEAMINASE 2 (R.norvegicus) BE100752 adenosine monophosphate deaminase 2 (isoform L) Ampd2 362015 NM_001101681 0006144 // purine base metabolic process // inferred from electronic annotation /// 0009117 // nucleotide metabolic process // inferred from electronic annotation /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // inferred from electronic annotation 0003876 // AMP deaminase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016814 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines // inferred from electronic annotation /// 0019239 // deaminase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377499_a_at BF420810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420810 /DB_XREF=gi:11408799 /DB_XREF=UI-R-BJ2-bqa-e-02-0-UI.s1 /CLONE=UI-R-BJ2-bqa-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.41521.1 /TIER=ConsEnd /STK=4 /UG=Rn.41521 /UG_TITLE=ESTs, Weakly similar to A54660 histidine rich calcium binding protein (H.sapiens) BF420810 histidine rich calcium binding protein Hrc 292905 NM_181369 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0008016 // regulation of heart contraction // not recorded /// 0055074 // calcium ion homeostasis // inferred from electronic annotation /// 0055074 // calcium ion homeostasis // not recorded 0033017 // sarcoplasmic reticulum membrane // inferred from electronic annotation /// 0033017 // sarcoplasmic reticulum membrane // not recorded 0005509 // calcium ion binding // traceable author statement 1377500_at BE119198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119198 /DB_XREF=gi:8511303 /DB_XREF=UI-R-CA0-azz-f-02-0-UI.s1 /CLONE=UI-R-CA0-azz-f-02-0-UI /FEA=EST /CNT=4 /TID=Rn.9532.1 /TIER=ConsEnd /STK=4 /UG=Rn.9532 /UG_TITLE=ESTs BE119198 1377501_at BM383704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383704 /DB_XREF=gi:18183757 /DB_XREF=UI-R-DM1-ckb-g-01-0-UI.s1 /CLONE=UI-R-DM1-ckb-g-01-0-UI /FEA=EST /CNT=4 /TID=Rn.57387.1 /TIER=ConsEnd /STK=4 /UG=Rn.57387 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) BM383704 zinc finger protein 317 Zfp317 500950 NM_001134634 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377502_at BE111515 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111515 /DB_XREF=gi:8503620 /DB_XREF=UI-R-BJ1-avb-f-12-0-UI.s1 /CLONE=UI-R-BJ1-avb-f-12-0-UI /FEA=EST /CNT=4 /TID=Rn.38564.1 /TIER=ConsEnd /STK=4 /UG=Rn.38564 /UG_TITLE=ESTs, Highly similar to FXO1 MOUSE FORKHEAD PROTEIN O1A (M.musculus) BE111515 forkhead box O1 Foxo1 84482 NM_001191846 /// XM_001056726 /// XM_342244 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // not recorded /// 0032873 // negative regulation of stress-activated MAPK cascade // inferred from electronic annotation /// 0032873 // negative regulation of stress-activated MAPK cascade // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045722 // positive regulation of gluconeogenesis // not recorded /// 0045941 // positive regulation of transcription // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // inferred by curator /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1377503_at BG371773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371773 /DB_XREF=gi:13268310 /DB_XREF=UI-R-CV0-bri-b-01-0-UI.s1 /CLONE=UI-R-CV0-bri-b-01-0-UI /FEA=EST /CNT=4 /TID=Rn.45186.1 /TIER=ConsEnd /STK=4 /UG=Rn.45186 /UG_TITLE=ESTs, Weakly similar to S50724 hypothetical protein YNL207w - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BG371773 RIO kinase 2 (yeast) Riok2 308201 NM_001009687 0006468 // protein phosphorylation // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1377504_at BG376478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376478 /DB_XREF=gi:13300950 /DB_XREF=UI-R-CT0-bup-a-02-0-UI.s1 /CLONE=UI-R-CT0-bup-a-02-0-UI /FEA=EST /CNT=4 /TID=Rn.58106.1 /TIER=ConsEnd /STK=4 /UG=Rn.58106 /UG_TITLE=ESTs, Weakly similar to T26512 hypothetical protein Y17G7B.18b - Caenorhabditis elegans (C.elegans) BG376478 1377505_at BI296695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296695 /DB_XREF=gi:14961379 /DB_XREF=UI-R-CV2-cgv-c-04-0-UI.s1 /CLONE=UI-R-CV2-cgv-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.73438.1 /TIER=ConsEnd /STK=4 /UG=Rn.73438 /UG_TITLE=ESTs BI296695 1377506_at BI289525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289525 /DB_XREF=gi:14947188 /DB_XREF=UI-R-DK0-cff-b-02-0-UI.s1 /CLONE=UI-R-DK0-cff-b-02-0-UI /FEA=EST /CNT=4 /TID=Rn.40787.1 /TIER=ConsEnd /STK=4 /UG=Rn.40787 /UG_TITLE=ESTs, Weakly similar to BMP3 RAT BONE MORPHOGENETIC PROTEIN 3 PRECURSOR (R.norvegicus) BI289525 growth differentiation factor 1 /// LAG1 homolog, ceramide synthase 1 Gdf1 /// Lass1 290658 /// 306351 NM_001044230 /// NM_001044240 0040007 // growth // inferred from electronic annotation /// 0046513 // ceramide biosynthetic process // inferred from electronic annotation /// 0046513 // ceramide biosynthetic process // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008083 // growth factor activity // inferred from electronic annotation /// 0050291 // sphingosine N-acyltransferase activity // inferred from electronic annotation /// 0050291 // sphingosine N-acyltransferase activity // not recorded 1377507_at AI548219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548219 /DB_XREF=gi:4465707 /DB_XREF=UI-R-C3-su-h-04-0-UI.s1 /CLONE=UI-R-C3-su-h-04-0-UI /FEA=EST /CNT=4 /TID=Rn.43483.1 /TIER=ConsEnd /STK=4 /UG=Rn.43483 /UG_TITLE=ESTs AI548219 1377508_at BI298836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298836 /DB_XREF=gi:14975116 /DB_XREF=UI-R-CV2-chv-b-12-0-UI.s1 /CLONE=UI-R-CV2-chv-b-12-0-UI /FEA=EST /CNT=4 /TID=Rn.62961.1 /TIER=ConsEnd /STK=4 /UG=Rn.62961 /UG_TITLE=ESTs BI298836 1377509_at BI295894 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295894 /DB_XREF=gi:14959797 /DB_XREF=UI-R-DK0-cfc-a-04-0-UI.s1 /CLONE=UI-R-DK0-cfc-a-04-0-UI /FEA=EST /CNT=4 /TID=Rn.63795.1 /TIER=ConsEnd /STK=4 /UG=Rn.63795 /UG_TITLE=ESTs BI295894 1377510_at BE114170 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114170 /DB_XREF=gi:8506275 /DB_XREF=UI-R-BJ1-awj-h-06-0-UI.s1 /CLONE=UI-R-BJ1-awj-h-06-0-UI /FEA=EST /CNT=4 /TID=Rn.66954.1 /TIER=ConsEnd /STK=4 /UG=Rn.66954 /UG_TITLE=ESTs BE114170 1377511_at BI298406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298406 /DB_XREF=gi:14974686 /DB_XREF=UI-R-CV2-cho-h-10-0-UI.s1 /CLONE=UI-R-CV2-cho-h-10-0-UI /FEA=EST /CNT=4 /TID=Rn.76507.1 /TIER=ConsEnd /STK=4 /UG=Rn.76507 /UG_TITLE=ESTs BI298406 1377512_at BI291272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291272 /DB_XREF=gi:14950658 /DB_XREF=UI-R-CV2-cgn-f-01-0-UI.s1 /CLONE=UI-R-CV2-cgn-f-01-0-UI /FEA=EST /CNT=4 /TID=Rn.79243.1 /TIER=ConsEnd /STK=4 /UG=Rn.79243 /UG_TITLE=ESTs BI291272 1377513_at BI287026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287026 /DB_XREF=gi:14942232 /DB_XREF=UI-R-CT0s-cax-b-01-0-UI.s1 /CLONE=UI-R-CT0s-cax-b-01-0-UI /FEA=EST /CNT=4 /TID=Rn.41149.1 /TIER=ConsEnd /STK=4 /UG=Rn.41149 /UG_TITLE=ESTs BI287026 1377514_at BF413478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413478 /DB_XREF=gi:11401467 /DB_XREF=UI-R-BT1-bob-f-07-0-UI.s1 /CLONE=UI-R-BT1-bob-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.50494.1 /TIER=ConsEnd /STK=4 /UG=Rn.50494 /UG_TITLE=ESTs BF413478 1377515_at BF402764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402764 /DB_XREF=gi:11390739 /DB_XREF=UI-R-CA0-bhk-d-08-0-UI.s1 /CLONE=UI-R-CA0-bhk-d-08-0-UI /FEA=EST /CNT=4 /TID=Rn.60126.1 /TIER=ConsEnd /STK=4 /UG=Rn.60126 /UG_TITLE=ESTs BF402764 1377516_at BF399641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399641 /DB_XREF=gi:11384651 /DB_XREF=UI-R-CA0-bhu-h-07-0-UI.s2 /CLONE=UI-R-CA0-bhu-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.61384.1 /TIER=ConsEnd /STK=4 /UG=Rn.61384 /UG_TITLE=ESTs BF399641 1377517_at AA945491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945491 /DB_XREF=gi:3105407 /DB_XREF=EST200990 /CLONE=RLIAO02 /FEA=EST /CNT=4 /TID=Rn.16212.1 /TIER=ConsEnd /STK=4 /UG=Rn.16212 /UG_TITLE=ESTs AA945491 1377518_at AW251224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251224 /DB_XREF=gi:6594815 /DB_XREF=UI-R-BJ0-adf-f-07-0-UI.s1 /CLONE=UI-R-BJ0-adf-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.44695.1 /TIER=ConsEnd /STK=4 /UG=Rn.44695 /UG_TITLE=ESTs, Moderately similar to CALCIUMCALMODULIN-DEPENDENT PROTEIN KINASE TYPE I (R.norvegicus) AW251224 calcium/calmodulin-dependent protein kinase IG Camk1g 171358 NM_182842 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0019722 // calcium-mediated signaling // non-traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005954 // calcium- and calmodulin-dependent protein kinase complex // inferred from electronic annotation /// 0005954 // calcium- and calmodulin-dependent protein kinase complex // not recorded /// 0012505 // endomembrane system // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from direct assay /// 0004683 // calmodulin-dependent protein kinase activity // not recorded /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1377519_a_at AI059932 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059932 /DB_XREF=gi:3333709 /DB_XREF=UI-R-C1-kr-f-03-0-UI.s1 /CLONE=UI-R-C1-kr-f-03-0-UI /FEA=EST /CNT=1 /TID=Rn.61438.2 /TIER=ConsEnd /STK=1 /UG=Rn.61438 /UG_TITLE=ESTs AI059932 similar to SET binding factor 2 RGD1559442 691042 NM_001134970 0016311 // dephosphorylation // inferred from electronic annotation 0016791 // phosphatase activity // inferred from electronic annotation 1377520_at BF418916 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418916 /DB_XREF=gi:11406905 /DB_XREF=UI-R-BJ2-bqk-d-09-0-UI.s1 /CLONE=UI-R-BJ2-bqk-d-09-0-UI /FEA=EST /CNT=4 /TID=Rn.48979.1 /TIER=ConsEnd /STK=4 /UG=Rn.48979 /UG_TITLE=ESTs BF418916 1377521_at BF415552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415552 /DB_XREF=gi:11403541 /DB_XREF=UI-R-CA1-bka-e-05-0-UI.s1 /CLONE=UI-R-CA1-bka-e-05-0-UI /FEA=EST /CNT=4 /TID=Rn.62740.1 /TIER=ConsEnd /STK=4 /UG=Rn.62740 /UG_TITLE=ESTs, Moderately similar to T25031 hypothetical protein T20D3.3 - Caenorhabditis elegans (C.elegans) BF415552 1377522_a_at BI294610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294610 /DB_XREF=gi:14957230 /DB_XREF=UI-R-DK0-cem-d-12-0-UI.s1 /CLONE=UI-R-DK0-cem-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.41117.1 /TIER=ConsEnd /STK=4 /UG=Rn.41117 /UG_TITLE=ESTs, Weakly similar to T14343 zinc finger RNA binding protein, chromosome-associated - mouse (M.musculus) BI294610 Similar to KIAA1086 protein RGD1304737 314639 XM_001070148 /// XM_234923 0006955 // immune response // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1377523_at BE113698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113698 /DB_XREF=gi:8505803 /DB_XREF=UI-R-BJ1-aws-d-05-0-UI.s1 /CLONE=UI-R-BJ1-aws-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.14648.1 /TIER=ConsEnd /STK=4 /UG=Rn.14648 /UG_TITLE=ESTs BE113698 1377524_at AI044320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044320 /DB_XREF=gi:3291223 /DB_XREF=UI-R-C1-jx-e-06-0-UI.s1 /CLONE=UI-R-C1-jx-e-06-0-UI /FEA=EST /CNT=4 /TID=Rn.16188.1 /TIER=ConsEnd /STK=4 /UG=Rn.16188 /UG_TITLE=ESTs AI044320 UPF0585 protein C16orf13 homolog /// similar to CG18661-PA LOC100363182 /// RGD1307155 100363182 /// 302998 NM_001037188 /// XM_002726566 /// XM_002729522 1377525_at BF408794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408794 /DB_XREF=gi:11396769 /DB_XREF=UI-R-BT1-bne-d-08-0-UI.s1 /CLONE=UI-R-BT1-bne-d-08-0-UI /FEA=EST /CNT=4 /TID=Rn.63103.1 /TIER=ConsEnd /STK=4 /UG=Rn.63103 /UG_TITLE=ESTs BF408794 1377526_at BE113239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113239 /DB_XREF=gi:8505344 /DB_XREF=UI-R-BJ1-awd-b-07-0-UI.s1 /CLONE=UI-R-BJ1-awd-b-07-0-UI /FEA=EST /CNT=4 /TID=Rn.53851.1 /TIER=ConsEnd /STK=4 /UG=Rn.53851 /UG_TITLE=ESTs BE113239 sorting nexin family member 27 Snx27 260323 NM_001110151 /// NM_152847 0006810 // transport // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007399 // nervous system development // non-traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1377527_at BF393186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393186 /DB_XREF=gi:11378046 /DB_XREF=UI-R-CA0-bfp-g-07-0-UI.s1 /CLONE=UI-R-CA0-bfp-g-07-0-UI /FEA=EST /CNT=4 /TID=Rn.59672.1 /TIER=ConsEnd /STK=4 /UG=Rn.59672 /UG_TITLE=ESTs BF393186 1377528_at BF392900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392900 /DB_XREF=gi:11377759 /DB_XREF=UI-R-CA0-bfq-e-09-0-UI.s1 /CLONE=UI-R-CA0-bfq-e-09-0-UI /FEA=EST /CNT=4 /TID=Rn.62102.1 /TIER=ConsEnd /STK=4 /UG=Rn.62102 /UG_TITLE=ESTs BF392900 1377529_at BF404045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404045 /DB_XREF=gi:11392020 /DB_XREF=UI-R-CA1-bjd-m-16-0-UI.s1 /CLONE=UI-R-CA1-bjd-m-16-0-UI /FEA=EST /CNT=4 /TID=Rn.62769.1 /TIER=ConsEnd /STK=4 /UG=Rn.62769 /UG_TITLE=ESTs BF404045 1377530_at BF392268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392268 /DB_XREF=gi:11377125 /DB_XREF=UI-R-CA0-bfn-b-01-0-UI.s1 /CLONE=UI-R-CA0-bfn-b-01-0-UI /FEA=EST /CNT=4 /TID=Rn.59217.1 /TIER=ConsEnd /STK=4 /UG=Rn.59217 /UG_TITLE=ESTs BF392268 1377531_at BF405592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405592 /DB_XREF=gi:11393567 /DB_XREF=UI-R-CA1-bix-i-04-0-UI.s1 /CLONE=UI-R-CA1-bix-i-04-0-UI /FEA=EST /CNT=4 /TID=Rn.60793.1 /TIER=ConsEnd /STK=4 /UG=Rn.60793 /UG_TITLE=ESTs BF405592 1377532_at AW434782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434782 /DB_XREF=gi:6966129 /DB_XREF=UI-R-BJ0p-agf-e-06-0-UI.s1 /CLONE=UI-R-BJ0p-agf-e-06-0-UI /FEA=EST /CNT=4 /TID=Rn.27399.1 /TIER=ConsEnd /STK=4 /UG=Rn.27399 /UG_TITLE=ESTs AW434782 PHD finger protein 20 Phf20 311575 NM_001107795 0005622 // intracellular // inferred from electronic annotation /// 0071339 // MLL1 complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377533_at BF413348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413348 /DB_XREF=gi:11401337 /DB_XREF=UI-R-CA0-boe-a-06-0-UI.s1 /CLONE=UI-R-CA0-boe-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.45163.1 /TIER=ConsEnd /STK=4 /UG=Rn.45163 /UG_TITLE=ESTs BF413348 DMRT-like family C1a Dmrtc1a 501668 NM_001025288 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 1377534_at BE097305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097305 /DB_XREF=gi:8488236 /DB_XREF=UI-R-BO1-apv-g-08-0-UI.s1 /CLONE=UI-R-BO1-apv-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.49654.1 /TIER=ConsEnd /STK=4 /UG=Rn.49654 /UG_TITLE=ESTs BE097305 serine/threonine kinase 32C Stk32c 365381 NM_001108922 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1377535_at BE101698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101698 /DB_XREF=gi:8493796 /DB_XREF=UI-R-BO1-aps-b-10-0-UI.s1 /CLONE=UI-R-BO1-aps-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.50112.1 /TIER=ConsEnd /STK=4 /UG=Rn.50112 /UG_TITLE=ESTs BE101698 1377536_at BE115737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115737 /DB_XREF=gi:8507842 /DB_XREF=UI-R-CA0-axs-c-10-0-UI.s1 /CLONE=UI-R-CA0-axs-c-10-0-UI /FEA=EST /CNT=4 /TID=Rn.51541.1 /TIER=ConsEnd /STK=4 /UG=Rn.51541 /UG_TITLE=ESTs BE115737 zinc finger, ZZ-type with EF hand domain 1 Zzef1 287476 XM_001080236 /// XM_002724514 /// XM_002724515 /// XM_002727781 /// XM_002727782 /// XM_237787 0030071 // regulation of mitotic metaphase/anaphase transition // inferred from electronic annotation 0005680 // anaphase-promoting complex // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1377537_at BE121268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121268 /DB_XREF=gi:8513373 /DB_XREF=UI-R-CA0-bas-h-11-0-UI.s1 /CLONE=UI-R-CA0-bas-h-11-0-UI /FEA=EST /CNT=4 /TID=Rn.52198.1 /TIER=ConsEnd /STK=4 /UG=Rn.52198 /UG_TITLE=ESTs BE121268 RGD1559980 RGD1559980 499158 NM_001195599 /// XM_001080931 /// XM_579921 1377538_at BF393047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393047 /DB_XREF=gi:11377907 /DB_XREF=UI-R-CA0-bgp-e-02-0-UI.s1 /CLONE=UI-R-CA0-bgp-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.57969.1 /TIER=ConsEnd /STK=4 /UG=Rn.57969 /UG_TITLE=ESTs BF393047 1377539_at BF404370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404370 /DB_XREF=gi:11392345 /DB_XREF=UI-R-CA1-bie-d-02-0-UI.s1 /CLONE=UI-R-CA1-bie-d-02-0-UI /FEA=EST /CNT=4 /TID=Rn.60077.1 /TIER=ConsEnd /STK=4 /UG=Rn.60077 /UG_TITLE=ESTs BF404370 1377540_at BF393067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393067 /DB_XREF=gi:11377927 /DB_XREF=UI-R-CA0-bgu-a-04-0-UI.s1 /CLONE=UI-R-CA0-bgu-a-04-0-UI /FEA=EST /CNT=4 /TID=Rn.61474.1 /TIER=ConsEnd /STK=4 /UG=Rn.61474 /UG_TITLE=ESTs BF393067 1377541_at BF405546 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405546 /DB_XREF=gi:11393521 /DB_XREF=UI-R-CA1-bix-a-06-0-UI.s1 /CLONE=UI-R-CA1-bix-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.62435.1 /TIER=ConsEnd /STK=4 /UG=Rn.62435 /UG_TITLE=ESTs BF405546 1377542_at BF394683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394683 /DB_XREF=gi:11379640 /DB_XREF=UI-R-CA0-bfy-f-05-0-UI.s1 /CLONE=UI-R-CA0-bfy-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.62485.1 /TIER=ConsEnd /STK=4 /UG=Rn.62485 /UG_TITLE=ESTs BF394683 Similar to KB07 protein RGD1561940 364686 XM_002725261 /// XM_002728470 1377543_at BF415477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415477 /DB_XREF=gi:11403466 /DB_XREF=UI-R-CA1-bjz-d-02-0-UI.s1 /CLONE=UI-R-CA1-bjz-d-02-0-UI /FEA=EST /CNT=4 /TID=Rn.62706.1 /TIER=ConsEnd /STK=4 /UG=Rn.62706 /UG_TITLE=ESTs BF415477 1377544_at BF416118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416118 /DB_XREF=gi:11404107 /DB_XREF=UI-R-CA0-bkq-d-10-0-UI.s1 /CLONE=UI-R-CA0-bkq-d-10-0-UI /FEA=EST /CNT=4 /TID=Rn.62923.1 /TIER=ConsEnd /STK=4 /UG=Rn.62923 /UG_TITLE=ESTs BF416118 G protein-coupled receptor 68 Gpr68 314386 NM_001108049 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1377545_at BF406266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406266 /DB_XREF=gi:11394241 /DB_XREF=UI-R-CA1-bjf-o-12-0-UI.s1 /CLONE=UI-R-CA1-bjf-o-12-0-UI /FEA=EST /CNT=4 /TID=Rn.63059.1 /TIER=ConsEnd /STK=4 /UG=Rn.63059 /UG_TITLE=ESTs BF406266 1377546_at BF397279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397279 /DB_XREF=gi:11382262 /DB_XREF=UI-R-BS2-bek-e-04-0-UI.s1 /CLONE=UI-R-BS2-bek-e-04-0-UI /FEA=EST /CNT=4 /TID=Rn.63390.1 /TIER=ConsEnd /STK=4 /UG=Rn.63390 /UG_TITLE=ESTs BF397279 1377547_at BF419375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419375 /DB_XREF=gi:11407364 /DB_XREF=UI-R-BJ2-bqq-h-07-0-UI.s1 /CLONE=UI-R-BJ2-bqq-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.63491.1 /TIER=ConsEnd /STK=4 /UG=Rn.63491 /UG_TITLE=ESTs BF419375 1377548_at BF402404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402404 /DB_XREF=gi:11390379 /DB_XREF=UI-R-CA0-bhn-h-01-0-UI.s1 /CLONE=UI-R-CA0-bhn-h-01-0-UI /FEA=EST /CNT=4 /TID=Rn.63637.1 /TIER=ConsEnd /STK=4 /UG=Rn.63637 /UG_TITLE=ESTs BF402404 1377549_at BF410265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410265 /DB_XREF=gi:11398240 /DB_XREF=UI-R-CA1-bjv-d-10-0-UI.s1 /CLONE=UI-R-CA1-bjv-d-10-0-UI /FEA=EST /CNT=4 /TID=Rn.64345.1 /TIER=ConsEnd /STK=4 /UG=Rn.64345 /UG_TITLE=ESTs, Weakly similar to PROTEIN KINASE C, GAMMA TYPE (R.norvegicus) BF410265 copine V Cpne5 309650 NM_001107616 0043005 // neuron projection // not recorded /// 0043025 // neuronal cell body // not recorded 1377550_at BF405298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405298 /DB_XREF=gi:11393273 /DB_XREF=UI-R-CA1-biw-i-03-0-UI.s1 /CLONE=UI-R-CA1-biw-i-03-0-UI /FEA=EST /CNT=4 /TID=Rn.65355.1 /TIER=ConsEnd /STK=4 /UG=Rn.65355 /UG_TITLE=ESTs, Weakly similar to B40141 mitochondrial solute carrier protein homolog - rat (R.norvegicus) BF405298 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 Slc25a23 301113 NM_001106873 0007165 // signal transduction // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1377551_at BE118580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118580 /DB_XREF=gi:8510685 /DB_XREF=UI-R-BJ1-azq-d-05-0-UI.s1 /CLONE=UI-R-BJ1-azq-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.22576.1 /TIER=ConsEnd /STK=4 /UG=Rn.22576 /UG_TITLE=ESTs BE118580 1377552_at BE098467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098467 /DB_XREF=gi:8490331 /DB_XREF=UI-R-BJ1-atc-c-10-0-UI.s1 /CLONE=UI-R-BJ1-atc-c-10-0-UI /FEA=EST /CNT=4 /TID=Rn.37690.1 /TIER=ConsEnd /STK=4 /UG=Rn.37690 /UG_TITLE=ESTs, Weakly similar to T18297 zinc-finger protein FOG-2 - mouse (M.musculus) BE098467 Similar to Zinc finger protein ZFPM1 (Zinc finger protein multitype 1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1) LOC691504 691504 XR_007127 1377553_at BF407226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407226 /DB_XREF=gi:11395201 /DB_XREF=UI-R-BJ2-bqc-b-08-0-UI.s1 /CLONE=UI-R-BJ2-bqc-b-08-0-UI /FEA=EST /CNT=4 /TID=Rn.45304.1 /TIER=ConsEnd /STK=4 /UG=Rn.45304 /UG_TITLE=ESTs BF407226 Leukocyte receptor cluster (LRC) member 9 Leng9 292596 XM_001058345 /// XM_214812 0016070 // RNA metabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377554_at BF394106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394106 /DB_XREF=gi:11378970 /DB_XREF=UI-R-CA0-bgz-d-05-0-UI.s1 /CLONE=UI-R-CA0-bgz-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.46783.1 /TIER=ConsEnd /STK=4 /UG=Rn.46783 /UG_TITLE=ESTs, Moderately similar to 4-1BB LIGAND (M.musculus) BF394106 tumor necrosis factor (ligand) superfamily, member 9 Tnfsf9 353218 NM_181384 0006955 // immune response // inferred from electronic annotation /// 0032729 // positive regulation of interferon-gamma production // inferred from direct assay /// 0032735 // positive regulation of interleukin-12 production // inferred from direct assay /// 0032755 // positive regulation of interleukin-6 production // inferred from direct assay /// 0042104 // positive regulation of activated T cell proliferation // inferred from direct assay /// 0042127 // regulation of cell proliferation // not recorded /// 0043011 // myeloid dendritic cell differentiation // inferred from direct assay /// 0045585 // positive regulation of cytotoxic T cell differentiation // inferred from direct assay 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005102 // receptor binding // not recorded /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation 1377555_at BF387432 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387432 /DB_XREF=gi:11372256 /DB_XREF=UI-R-CA1-bbm-d-05-0-UI.s1 /CLONE=UI-R-CA1-bbm-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.47760.1 /TIER=ConsEnd /STK=4 /UG=Rn.47760 /UG_TITLE=ESTs BF387432 1377556_at AW535380 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535380 /DB_XREF=gi:7177794 /DB_XREF=UI-R-BS0-aoe-e-04-0-UI.s1 /CLONE=UI-R-BS0-aoe-e-04-0-UI /FEA=EST /CNT=4 /TID=Rn.48415.1 /TIER=ConsEnd /STK=4 /UG=Rn.48415 /UG_TITLE=ESTs AW535380 1377557_at BE097459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097459 /DB_XREF=gi:8488390 /DB_XREF=UI-R-BO1-apx-g-08-0-UI.s1 /CLONE=UI-R-BO1-apx-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.49090.1 /TIER=ConsEnd /STK=4 /UG=Rn.49090 /UG_TITLE=ESTs, Weakly similar to S16788 probable reverse transcriptase - rat (R.norvegicus) BE097459 1377558_at BF393165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393165 /DB_XREF=gi:11378020 /DB_XREF=UI-R-CA0-bfp-d-12-0-UI.s1 /CLONE=UI-R-CA0-bfp-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.57993.1 /TIER=ConsEnd /STK=4 /UG=Rn.57993 /UG_TITLE=ESTs BF393165 1377559_at BF405014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405014 /DB_XREF=gi:11392989 /DB_XREF=UI-R-CA1-bio-e-02-0-UI.s1 /CLONE=UI-R-CA1-bio-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.58033.1 /TIER=ConsEnd /STK=4 /UG=Rn.58033 /UG_TITLE=ESTs BF405014 1377560_at BF394104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394104 /DB_XREF=gi:11378968 /DB_XREF=UI-R-CA0-bgz-d-02-0-UI.s1 /CLONE=UI-R-CA0-bgz-d-02-0-UI /FEA=EST /CNT=4 /TID=Rn.58213.1 /TIER=ConsEnd /STK=4 /UG=Rn.58213 /UG_TITLE=ESTs BF394104 1377561_at BF387010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387010 /DB_XREF=gi:11371834 /DB_XREF=UI-R-CA1-bbp-b-12-0-UI.s1 /CLONE=UI-R-CA1-bbp-b-12-0-UI /FEA=EST /CNT=4 /TID=Rn.60593.1 /TIER=ConsEnd /STK=4 /UG=Rn.60593 /UG_TITLE=ESTs BF387010 1377562_at AI711257 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711257 /DB_XREF=gi:5001033 /DB_XREF=UI-R-AA1-zv-a-05-0-UI.s1 /CLONE=UI-R-AA1-zv-a-05-0-UI /FEA=EST /CNT=4 /TID=Rn.41196.1 /TIER=ConsEnd /STK=4 /UG=Rn.41196 /UG_TITLE=ESTs, Weakly similar to T20272 hypothetical protein C56G7.3 - Caenorhabditis elegans (C.elegans) AI711257 ELMO/CED-12 domain containing 3 Elmod3 297342 NM_001013087 0006909 // phagocytosis // inferred from electronic annotation 0005856 // cytoskeleton // inferred from electronic annotation 1377563_at BI295947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295947 /DB_XREF=gi:14959902 /DB_XREF=UI-R-DK0-cfc-f-04-0-UI.s1 /CLONE=UI-R-DK0-cfc-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.41322.1 /TIER=ConsEnd /STK=4 /UG=Rn.41322 /UG_TITLE=ESTs, Highly similar to TROPONIN C, SKELETAL MUSCLE (M.musculus) BI295947 similar to leiomodin 3 (fetal) LOC687145 687145 XM_001077246 0005856 // cytoskeleton // inferred from electronic annotation 0005523 // tropomyosin binding // inferred from electronic annotation 1377564_at AI549166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549166 /DB_XREF=gi:4466654 /DB_XREF=UI-R-C3-ts-d-05-0-UI.s1 /CLONE=UI-R-C3-ts-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.35364.1 /TIER=ConsEnd /STK=4 /UG=Rn.35364 /UG_TITLE=ESTs AI549166 1377565_at AI577910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577910 /DB_XREF=gi:4562286 /DB_XREF=UI-R-G0-uj-d-11-0-UI.s1 /CLONE=UI-R-G0-uj-d-11-0-UI /FEA=EST /CNT=4 /TID=Rn.39371.1 /TIER=ConsEnd /STK=4 /UG=Rn.39371 /UG_TITLE=ESTs, Moderately similar to PAGT RAT POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE (R.norvegicus) AI577910 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13) Galnt13 311039 NM_199106 0006493 // protein O-linked glycosylation // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // not recorded /// 0005529 // sugar binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1377566_at BE102845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102845 /DB_XREF=gi:8494944 /DB_XREF=UI-R-BT1-aqq-a-06-0-UI.s1 /CLONE=UI-R-BT1-aqq-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.50211.1 /TIER=ConsEnd /STK=4 /UG=Rn.50211 /UG_TITLE=ESTs BE102845 1377567_at AW434728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434728 /DB_XREF=gi:6966035 /DB_XREF=UI-R-BJ0p-afz-e-02-0-UI.s1 /CLONE=UI-R-BJ0p-afz-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.38011.1 /TIER=ConsEnd /STK=4 /UG=Rn.38011 /UG_TITLE=ESTs AW434728 similar to novel protein RGD1565283 498274 NM_001109074 1377568_at BE098911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098911 /DB_XREF=gi:8490784 /DB_XREF=UI-R-BJ1-atg-c-03-0-UI.s1 /CLONE=UI-R-BJ1-atg-c-03-0-UI /FEA=EST /CNT=4 /TID=Rn.49336.1 /TIER=ConsEnd /STK=4 /UG=Rn.49336 /UG_TITLE=ESTs BE098911 zinc finger protein, multitype 2 Zfpm2 314930 NM_001130501 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001570 // vasculogenesis // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0007507 // heart development // not recorded /// 0030324 // lung development // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048568 // embryonic organ development // not recorded /// 0048738 // cardiac muscle tissue development // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded 1377569_at AW534117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534117 /DB_XREF=gi:7176531 /DB_XREF=UI-R-C4-alp-d-04-0-UI.s1 /CLONE=UI-R-C4-alp-d-04-0-UI /FEA=EST /CNT=4 /TID=Rn.12091.1 /TIER=ConsEnd /STK=4 /UG=Rn.12091 /UG_TITLE=ESTs AW534117 Salvador homolog 1 (Drosophila) Sav1 299116 NM_001097581 0007165 // signal transduction // inferred from electronic annotation /// 0035329 // hippo signaling cascade // not recorded /// 0035329 // hippo signaling cascade // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1377570_at AI059563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059563 /DB_XREF=gi:3333340 /DB_XREF=UI-R-C1-lj-c-05-0-UI.s1 /CLONE=UI-R-C1-lj-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.19560.1 /TIER=ConsEnd /STK=4 /UG=Rn.19560 /UG_TITLE=ESTs AI059563 1377571_at BI276518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276518 /DB_XREF=gi:14921499 /DB_XREF=UI-R-CX0-bwv-c-07-0-UI.s1 /CLONE=UI-R-CX0-bwv-c-07-0-UI /FEA=EST /CNT=4 /TID=Rn.40155.1 /TIER=ConsEnd /STK=4 /UG=Rn.40155 /UG_TITLE=ESTs BI276518 zinc finger protein 628 LOC100359484 100359484 XM_002725519 /// XM_002728664 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1377572_at AW434912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434912 /DB_XREF=gi:6966219 /DB_XREF=UI-R-BJ0p-afg-e-03-0-UI.s1 /CLONE=UI-R-BJ0p-afg-e-03-0-UI /FEA=EST /CNT=4 /TID=Rn.17560.1 /TIER=ConsEnd /STK=4 /UG=Rn.17560 /UG_TITLE=ESTs, Highly similar to T42654 hypothetical protein DKFZp434G1115.1 (H.sapiens) AW434912 similar to UDP-glucose ceramide glucosyltransferase-like 2 RGD1563520 361091 XR_085629 /// XR_086035 1377573_at AI411132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411132 /DB_XREF=gi:4254636 /DB_XREF=EST239426 /CLONE=RKIET60 /FEA=EST /CNT=4 /TID=Rn.22441.1 /TIER=ConsEnd /STK=4 /UG=Rn.22441 /UG_TITLE=ESTs, Weakly similar to CAH5 RAT CARBONIC ANHYDRASE VA, MITOCHONDRIAL PRECURSOR (R.norvegicus) AI411132 carbonic anhydrase 5b, mitochondrial Car5b 302669 NM_001005551 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0004089 // carbonate dehydratase activity // inferred from electronic annotation /// 0004089 // carbonate dehydratase activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377574_at BF392065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392065 /DB_XREF=gi:11376922 /DB_XREF=UI-R-CA0-bfg-g-08-0-UI.s1 /CLONE=UI-R-CA0-bfg-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.57731.1 /TIER=ConsEnd /STK=4 /UG=Rn.57731 /UG_TITLE=ESTs BF392065 1377575_s_at BF414677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414677 /DB_XREF=gi:11402666 /DB_XREF=UI-R-BJ2-bor-f-11-0-UI.s1 /CLONE=UI-R-BJ2-bor-f-11-0-UI /FEA=EST /CNT=4 /TID=Rn.65480.1 /TIER=ConsEnd /STK=4 /UG=Rn.65480 /UG_TITLE=ESTs, Weakly similar to ZF94_RAT ZINC FINGER PROTEIN 94 (ZFP-94) (ZINC FINGER PROTEIN Y1) (RLZF-Y) (R.norvegicus) BF414677 zinc finger protein 213 Znf213 287094 NM_001105764 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377576_at AA891800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891800 /DB_XREF=gi:3018679 /DB_XREF=EST195603 /CLONE=RKIAG95 /FEA=EST /CNT=4 /TID=Rn.37581.1 /TIER=ConsEnd /STK=4 /UG=Rn.37581 /UG_TITLE=ESTs, Weakly similar to IPYR_HUMAN INORGANIC PYROPHOSPHATASE (H.sapiens) AA891800 pyrophosphatase (inorganic) 2 Ppa2 310856 NM_001135871 0006796 // phosphate metabolic process // inferred from electronic annotation /// 0071344 // diphosphate metabolic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // not recorded 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004427 // inorganic diphosphatase activity // inferred from electronic annotation /// 0004427 // inorganic diphosphatase activity // not recorded 1377577_at BI283031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283031 /DB_XREF=gi:14934384 /DB_XREF=UI-R-DB0-byr-b-11-0-UI.s1 /CLONE=UI-R-DB0-byr-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.12593.1 /TIER=ConsEnd /STK=4 /UG=Rn.12593 /UG_TITLE=ESTs, Highly similar to GUAA_HUMAN GMP SYNTHASE (H.sapiens) BI283031 guanine monphosphate synthetase Gmps 295088 NM_001024754 0006164 // purine nucleotide biosynthetic process // inferred from electronic annotation /// 0006177 // GMP biosynthetic process // inferred from direct assay /// 0006177 // GMP biosynthetic process // inferred from electronic annotation /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003921 // GMP synthase activity // inferred from direct assay /// 0003922 // GMP synthase (glutamine-hydrolyzing) activity // inferred from direct assay /// 0003922 // GMP synthase (glutamine-hydrolyzing) activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from direct assay 1377578_at AI072161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072161 /DB_XREF=gi:3398355 /DB_XREF=UI-R-C2-mz-f-11-0-UI.s1 /CLONE=UI-R-C2-mz-f-11-0-UI /FEA=EST /CNT=4 /TID=Rn.9086.1 /TIER=ConsEnd /STK=4 /UG=Rn.9086 /UG_TITLE=ESTs AI072161 1377579_at AW252555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252555 /DB_XREF=gi:6596146 /DB_XREF=UI-R-BJ0-ada-h-06-0-UI.s1 /CLONE=UI-R-BJ0-ada-h-06-0-UI /FEA=EST /CNT=4 /TID=Rn.41406.1 /TIER=ConsEnd /STK=4 /UG=Rn.41406 /UG_TITLE=ESTs AW252555 1377580_at AA964744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964744 /DB_XREF=gi:4279618 /DB_XREF=UI-R-C0-gx-g-07-0-UI.s1 /CLONE=UI-R-C0-gx-g-07-0-UI /FEA=EST /CNT=4 /TID=Rn.44698.1 /TIER=ConsEnd /STK=4 /UG=Rn.44698 /UG_TITLE=ESTs AA964744 family with sequence similarity 115, member A Fam115a 362353 XM_001072497 /// XM_342675 1377581_at AW526869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526869 /DB_XREF=gi:7169283 /DB_XREF=UI-R-BO1-ajf-a-03-0-UI.s1 /CLONE=UI-R-BO1-ajf-a-03-0-UI /FEA=EST /CNT=4 /TID=Rn.44938.1 /TIER=ConsEnd /STK=4 /UG=Rn.44938 /UG_TITLE=ESTs AW526869 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1 Galntl1 362760 NM_001100863 /// XM_001053416 /// XM_343087 1377582_at BE095938 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095938 /DB_XREF=gi:8486869 /DB_XREF=UI-R-BU0-apd-d-09-0-UI.s1 /CLONE=UI-R-BU0-apd-d-09-0-UI /FEA=EST /CNT=4 /TID=Rn.41060.1 /TIER=ConsEnd /STK=4 /UG=Rn.41060 /UG_TITLE=ESTs BE095938 TOX high mobility group box family member 3 Tox3 291908 NM_001106171 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1377583_at BE115671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115671 /DB_XREF=gi:8507776 /DB_XREF=UI-R-BJ1-avy-f-01-0-UI.s1 /CLONE=UI-R-BJ1-avy-f-01-0-UI /FEA=EST /CNT=4 /TID=Rn.22694.1 /TIER=ConsEnd /STK=4 /UG=Rn.22694 /UG_TITLE=ESTs, Highly similar to AKA2_HUMAN A KINASE ANCHOR PROTEIN 2 (PROTEIN KINASE A ANCHORING PROTEIN 2) (PRKA2) (H.sapiens) BE115671 1377584_at BI297375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297375 /DB_XREF=gi:14962694 /DB_XREF=UI-R-CV2-cgx-f-07-0-UI.s1 /CLONE=UI-R-CV2-cgx-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.66213.1 /TIER=ConsEnd /STK=4 /UG=Rn.66213 /UG_TITLE=ESTs BI297375 TMF1-regulated nuclear protein 1 Trnp1 688990 XM_001069068 /// XM_002726600 1377585_at BI289790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289790 /DB_XREF=gi:14947732 /DB_XREF=UI-R-DK0-cfo-c-03-0-UI.s1 /CLONE=UI-R-DK0-cfo-c-03-0-UI /FEA=EST /CNT=4 /TID=Rn.20380.1 /TIER=ConsEnd /STK=4 /UG=Rn.20380 /UG_TITLE=ESTs BI289790 vestigial like 1 (Drosophila) Vgll1 363508 XM_001058701 /// XM_343832 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0030528 // transcription regulator activity // inferred from electronic annotation 1377586_at BI288982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288982 /DB_XREF=gi:14946088 /DB_XREF=UI-R-DK0-cdh-a-10-0-UI.s1 /CLONE=UI-R-DK0-cdh-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.62020.1 /TIER=ConsEnd /STK=4 /UG=Rn.62020 /UG_TITLE=ESTs BI288982 1377587_at BF400794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400794 /DB_XREF=gi:11388809 /DB_XREF=UI-R-CA0-bhg-c-07-0-UI.s1 /CLONE=UI-R-CA0-bhg-c-07-0-UI /FEA=EST /CNT=4 /TID=Rn.62712.1 /TIER=ConsEnd /STK=4 /UG=Rn.62712 /UG_TITLE=ESTs BF400794 ankyrin repeat domain 60 Ankrd60 296417 XM_001054773 /// XM_001071433 1377588_at BI300335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300335 /DB_XREF=gi:14976615 /DB_XREF=UI-R-CV2-cid-g-07-0-UI.s1 /CLONE=UI-R-CV2-cid-g-07-0-UI /FEA=EST /CNT=4 /TID=Rn.76386.1 /TIER=ConsEnd /STK=4 /UG=Rn.76386 /UG_TITLE=ESTs BI300335 1377589_at BF386215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386215 /DB_XREF=gi:11371039 /DB_XREF=UI-R-CA1-bbc-a-03-0-UI.s1 /CLONE=UI-R-CA1-bbc-a-03-0-UI /FEA=EST /CNT=4 /TID=Rn.60087.1 /TIER=ConsEnd /STK=4 /UG=Rn.60087 /UG_TITLE=ESTs BF386215 1377590_at BF420493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420493 /DB_XREF=gi:11408482 /DB_XREF=UI-R-BJ2-bpw-f-06-0-UI.s1 /CLONE=UI-R-BJ2-bpw-f-06-0-UI /FEA=EST /CNT=4 /TID=Rn.64081.1 /TIER=ConsEnd /STK=4 /UG=Rn.64081 /UG_TITLE=ESTs BF420493 Ring finger and FYVE like domain containing protein Rffl 282844 NM_001004068 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0006915 // apoptosis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377591_at BE109656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109656 /DB_XREF=gi:8501761 /DB_XREF=UI-R-BJ1-avq-f-07-0-UI.s1 /CLONE=UI-R-BJ1-avq-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.49127.1 /TIER=ConsEnd /STK=4 /UG=Rn.49127 /UG_TITLE=ESTs, Highly similar to TIAM MOUSE T-LYMPHOMA INVASION AND METASTASIS INDUCING PROTEIN 1 (M.musculus) BE109656 T-cell lymphoma invasion and metastasis 1 Tiam1 304109 NM_001100558 0006915 // apoptosis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0048013 // ephrin receptor signaling pathway // not recorded /// 0050772 // positive regulation of axonogenesis // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded 0005057 // receptor signaling protein activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005543 // phospholipid binding // not recorded /// 0046875 // ephrin receptor binding // not recorded 1377592_at BF408982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408982 /DB_XREF=gi:11396957 /DB_XREF=UI-R-BJ2-bpn-f-08-0-UI.s1 /CLONE=UI-R-BJ2-bpn-f-08-0-UI /FEA=EST /CNT=4 /TID=Rn.48262.1 /TIER=ConsEnd /STK=4 /UG=Rn.48262 /UG_TITLE=ESTs, Highly similar to zinc finger protein, multitype 2 (Mus musculus) (M.musculus) BF408982 Zinc finger protein, multitype 2 Zfpm2 314930 NM_001130501 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001570 // vasculogenesis // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0007507 // heart development // not recorded /// 0030324 // lung development // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048568 // embryonic organ development // not recorded /// 0048738 // cardiac muscle tissue development // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded 1377593_at BI284172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284172 /DB_XREF=gi:14936610 /DB_XREF=UI-R-CX0s-ccn-a-08-0-UI.s1 /CLONE=UI-R-CX0s-ccn-a-08-0-UI /FEA=EST /CNT=28 /TID=Rn.7840.1 /TIER=ConsEnd /STK=3 /UG=Rn.7840 /UG_TITLE=ESTs, Weakly similar to T51776 dolichyl-phosphate beta-glucosyltransferase (H.sapiens) BI284172 dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit Dpm1 296394 NM_001106544 0006506 // GPI anchor biosynthetic process // not recorded /// 0019348 // dolichol metabolic process // inferred from direct assay /// 0019348 // dolichol metabolic process // not recorded /// 0019673 // GDP-mannose metabolic process // inferred from direct assay /// 0035268 // protein mannosylation // not recorded /// 0035269 // protein O-linked mannosylation // not recorded 0005624 // membrane fraction // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0033185 // dolichol-phosphate-mannose synthase complex // not recorded 0004169 // dolichyl-phosphate-mannose-protein mannosyltransferase activity // not recorded /// 0004582 // dolichyl-phosphate beta-D-mannosyltransferase activity // inferred from direct assay /// 0004582 // dolichyl-phosphate beta-D-mannosyltransferase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005537 // mannose binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0043178 // alcohol binding // inferred from direct assay 1377594_at BF548525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548525 /DB_XREF=gi:11639632 /DB_XREF=UI-R-A0-at-a-06-0-UI.r1 /CLONE=UI-R-A0-at-a-06-0-UI /FEA=EST /CNT=17 /TID=Rn.6818.1 /TIER=ConsEnd /STK=3 /UG=Rn.6818 /UG_TITLE=ESTs BF548525 SHC (Src homology 2 domain containing) transforming protein 1 Shc1 85385 NM_001164060 /// NM_053517 0000165 // MAPKKK cascade // not recorded /// 0000187 // activation of MAPK activity // inferred from mutant phenotype /// 0000187 // activation of MAPK activity // not recorded /// 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0007265 // Ras protein signal transduction // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007568 // aging // inferred from physical interaction /// 0008286 // insulin receptor signaling pathway // inferred from direct assay /// 0008286 // insulin receptor signaling pathway // inferred from mutant phenotype /// 0009636 // response to toxin // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from mutant phenotype /// 0030182 // neuron differentiation // inferred from mutant phenotype /// 0031100 // organ regeneration // inferred from expression pattern /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0031532 // actin cytoskeleton reorganization // inferred from electronic annotation /// 0031532 // actin cytoskeleton reorganization // not recorded /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0035094 // response to nicotine // inferred from expression pattern /// 0040008 // regulation of growth // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0045740 // positive regulation of DNA replication // inferred from mutant phenotype /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0010008 // endosome membrane // inferred from direct assay /// 0070435 // Shc-EGFR complex // inferred from direct assay 0001784 // phosphotyrosine binding // inferred from physical interaction /// 0005154 // epidermal growth factor receptor binding // inferred from physical interaction /// 0005158 // insulin receptor binding // not recorded /// 0005159 // insulin-like growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction /// 0051219 // phosphoprotein binding // inferred from physical interaction 1377595_at AI044347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044347 /DB_XREF=gi:3291250 /DB_XREF=UI-R-C0-is-c-07-0-UI.s1 /CLONE=UI-R-C0-is-c-07-0-UI /FEA=EST /CNT=19 /TID=Rn.12870.1 /TIER=ConsEnd /STK=3 /UG=Rn.12870 /UG_TITLE=ESTs AI044347 sperm specific antigen 2 Ssfa2 311146 NM_001107738 1377596_a_at AI008698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008698 /DB_XREF=gi:3222530 /DB_XREF=EST203149 /CLONE=REMBB78 /FEA=EST /CNT=4 /TID=Rn.3694.2 /TIER=ConsEnd /STK=1 /UG=Rn.3694 /UG_TITLE=ESTs AI008698 mediator complex subunit 30 Med30 299905 NM_001130539 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0030518 // steroid hormone receptor signaling pathway // not recorded /// 0030521 // androgen receptor signaling pathway // not recorded 0005634 // nucleus // not recorded /// 0016592 // mediator complex // not recorded 0003712 // transcription cofactor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0016455 // RNA polymerase II transcription mediator activity // not recorded /// 0016563 // transcription activator activity // not recorded /// 0042802 // identical protein binding // not recorded /// 0046966 // thyroid hormone receptor binding // not recorded 1377597_at BI300688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300688 /DB_XREF=gi:14976968 /DB_XREF=UI-R-CV2-cii-b-12-0-UI.s1 /CLONE=UI-R-CV2-cii-b-12-0-UI /FEA=EST /CNT=13 /TID=Rn.8263.1 /TIER=ConsEnd /STK=3 /UG=Rn.8263 /UG_TITLE=ESTs BI300688 AT rich interactive domain 2 (Arid-rfx like) Arid2 366980 XM_001059099 /// XM_345867 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1377598_at AJ225648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ225648 /DB_XREF=gi:4833477 /DB_XREF=RNJ225648 /CLONE=IRL431 /FEA=EST /CNT=17 /TID=Rn.7463.1 /TIER=ConsEnd /STK=3 /UG=Rn.7463 /UG_TITLE=ESTs AJ225648 coenzyme Q2 homolog, prenyltransferase (yeast) Coq2 498332 NM_001044255 0006071 // glycerol metabolic process // inferred from electronic annotation /// 0006071 // glycerol metabolic process // not recorded /// 0006744 // ubiquinone biosynthetic process // inferred from electronic annotation /// 0006744 // ubiquinone biosynthetic process // not recorded /// 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0004659 // prenyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1377599_at BM385286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385286 /DB_XREF=gi:18185339 /DB_XREF=UI-R-EB1-clf-l-18-0-UI.s1 /CLONE=UI-R-EB1-clf-l-18-0-UI /FEA=EST /CNT=14 /TID=Rn.8183.1 /TIER=ConsEnd /STK=3 /UG=Rn.8183 /UG_TITLE=ESTs, Moderately similar to Y188_HUMAN HYPOTHETICAL PROTEIN KIAA0188 (H.sapiens) BM385286 1377600_at BF419034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419034 /DB_XREF=gi:11407023 /DB_XREF=UI-R-BJ2-bqm-g-09-0-UI.s1 /CLONE=UI-R-BJ2-bqm-g-09-0-UI /FEA=EST /CNT=13 /TID=Rn.20401.1 /TIER=ConsEnd /STK=3 /UG=Rn.20401 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) BF419034 zinc finger protein 777 Znf777 502764 NM_001109348 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1377601_at BM386514 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386514 /DB_XREF=gi:18186567 /DB_XREF=UI-R-CN1-cjg-o-05-0-UI.s1 /CLONE=UI-R-CN1-cjg-o-05-0-UI /FEA=EST /CNT=12 /TID=Rn.22122.1 /TIER=ConsEnd /STK=3 /UG=Rn.22122 /UG_TITLE=ESTs BM386514 similar to C21orf70 protein RGD1311257 294333 NM_001008307 1377602_at BF284944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284944 /DB_XREF=gi:11216014 /DB_XREF=EST449535 /CLONE=RGIEX96 /FEA=EST /CNT=13 /TID=Rn.40265.1 /TIER=ConsEnd /STK=3 /UG=Rn.40265 /UG_TITLE=ESTs, Moderately similar to AP4A MOUSE BIS(5-NUCLEOSYL)-TETRAPHOSPHATASE (M.musculus) BF284944 nudix (nucleoside diphosphate linked moiety X)-type motif 2 Nudt2 297998 NM_207596 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004081 // bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008796 // bis(5'-nucleosyl)-tetraphosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation 1377603_at BF284123 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284123 /DB_XREF=gi:11215193 /DB_XREF=EST448714 /CLONE=RGIEL27 /FEA=EST /CNT=12 /TID=Rn.19860.1 /TIER=ConsEnd /STK=3 /UG=Rn.19860 /UG_TITLE=ESTs BF284123 sorting nexin 24 Snx24 361328 NM_001008364 0006810 // transport // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1377604_a_at BF549046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549046 /DB_XREF=gi:11640201 /DB_XREF=UI-R-A0-af-g-09-0-UI.r1 /CLONE=UI-R-A0-af-g-09-0-UI /FEA=EST /CNT=1 /TID=Rn.12908.2 /TIER=ConsEnd /STK=0 /UG=Rn.12908 /UG_TITLE=ESTs, Highly similar to Pftaire-1 (M.musculus) BF549046 PFTAIRE protein kinase 1 Pftk1 362316 NM_001108617 0000086 // G2/M transition of mitotic cell cycle // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0060828 // regulation of canonical Wnt receptor signaling pathway // not recorded 0000308 // cytoplasmic cyclin-dependent protein kinase holoenzyme complex // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0030332 // cyclin binding // not recorded 1377606_at AI500913 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI500913 /DB_XREF=gi:4398764 /DB_XREF=UI-R-C2p-rn-b-12-0-UI.s1 /CLONE=UI-R-C2p-rn-b-12-0-UI /FEA=EST /CNT=11 /TID=Rn.12908.1 /TIER=ConsEnd /STK=3 /UG=Rn.12908 /UG_TITLE=ESTs, Highly similar to Pftaire-1 (M.musculus) AI500913 PFTAIRE protein kinase 1 Pftk1 362316 NM_001108617 0000086 // G2/M transition of mitotic cell cycle // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0060828 // regulation of canonical Wnt receptor signaling pathway // not recorded 0000308 // cytoplasmic cyclin-dependent protein kinase holoenzyme complex // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0030332 // cyclin binding // not recorded 1377607_at BM385631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385631 /DB_XREF=gi:18185684 /DB_XREF=UI-R-DM1-ckd-p-05-0-UI.s1 /CLONE=UI-R-DM1-ckd-p-05-0-UI /FEA=EST /CNT=18 /TID=Rn.24863.1 /TIER=ConsEnd /STK=3 /UG=Rn.24863 /UG_TITLE=ESTs BM385631 mitogen activated protein kinase kinase kinase 3 Map3k3 303604 NM_001107058 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0046777 // protein autophosphorylation // not recorded 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1377608_a_at BM392298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392298 /DB_XREF=gi:18192351 /DB_XREF=UI-R-DO1-ckp-d-02-0-UI.s1 /CLONE=UI-R-DO1-ckp-d-02-0-UI /FEA=EST /CNT=16 /TID=Rn.12369.1 /TIER=ConsEnd /STK=3 /UG=Rn.12369 /UG_TITLE=ESTs, Weakly similar to ROD_RAT HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0 (HNRNP D0) (AU-RICH ELEMENT RNA-BINDING PROTEIN 1) (R.norvegicus) BM392298 TAR DNA binding protein Tardbp 298648 NM_001011979 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1377609_at BE112251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112251 /DB_XREF=gi:8504356 /DB_XREF=UI-R-BJ1-avl-e-03-0-UI.s1 /CLONE=UI-R-BJ1-avl-e-03-0-UI /FEA=EST /CNT=12 /TID=Rn.4151.1 /TIER=ConsEnd /STK=3 /UG=Rn.4151 /UG_TITLE=ESTs BE112251 homeodomain interacting protein kinase 1 Hipk1 365895 NM_001100986 0006350 // transcription // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // not recorded /// 0016605 // PML body // not recorded /// 0016607 // nuclear speck // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1377610_at AI453854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI453854 /DB_XREF=gi:4289637 /DB_XREF=UI-R-A0-ah-b-05-0-UI.s1 /CLONE=UI-R-A0-ah-b-05-0-UI /FEA=EST /CNT=11 /TID=Rn.16210.1 /TIER=ConsEnd /STK=3 /UG=Rn.16210 /UG_TITLE=ESTs AI453854 leiomodin 2 (cardiac) Lmod2 296935 NM_001100964 0005856 // cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005523 // tropomyosin binding // inferred from electronic annotation 1377611_at AI145868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145868 /DB_XREF=gi:3667667 /DB_XREF=UI-R-BT0-pz-h-06-0-UI.s1 /CLONE=UI-R-BT0-pz-h-06-0-UI /FEA=EST /CNT=10 /TID=Rn.23514.1 /TIER=ConsEnd /STK=3 /UG=Rn.23514 /UG_TITLE=ESTs AI145868 1377612_at BI289992 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289992 /DB_XREF=gi:14948136 /DB_XREF=UI-R-DK0-cfq-e-12-0-UI.s1 /CLONE=UI-R-DK0-cfq-e-12-0-UI /FEA=EST /CNT=17 /TID=Rn.22215.1 /TIER=ConsEnd /STK=3 /UG=Rn.22215 /UG_TITLE=ESTs BI289992 NMDA receptor regulated 1 Narg1 310399 NM_001107674 0006474 // N-terminal protein amino acid acetylation // not recorded /// 0008152 // metabolic process // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008080 // N-acetyltransferase activity // not recorded /// 0016407 // acetyltransferase activity // not recorded /// 0043022 // ribosome binding // not recorded 1377613_at BF403784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403784 /DB_XREF=gi:11391759 /DB_XREF=UI-R-CA1-bjc-n-14-0-UI.s1 /CLONE=UI-R-CA1-bjc-n-14-0-UI /FEA=EST /CNT=14 /TID=Rn.22865.1 /TIER=ConsEnd /STK=3 /UG=Rn.22865 /UG_TITLE=ESTs, Weakly similar to homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 (Mus musculus) (M.musculus) BF403784 HERPUD family member 2 Herpud2 300463 NM_001024988 0006986 // response to unfolded protein // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1377614_at BI283147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283147 /DB_XREF=gi:14934604 /DB_XREF=UI-R-CU0s-cca-f-01-0-UI.s1 /CLONE=UI-R-CU0s-cca-f-01-0-UI /FEA=EST /CNT=13 /TID=Rn.3179.1 /TIER=ConsEnd /STK=3 /UG=Rn.3179 /UG_TITLE=ESTs, Moderately similar to A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain (R.norvegicus) BI283147 INO80 complex subunit E Ino80e 293494 NM_001013900 1377615_at AI112395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112395 /DB_XREF=gi:3512344 /DB_XREF=UI-R-Y0-mn-h-06-0-UI.s1 /CLONE=UI-R-Y0-mn-h-06-0-UI /FEA=EST /CNT=11 /TID=Rn.25814.1 /TIER=ConsEnd /STK=3 /UG=Rn.25814 /UG_TITLE=ESTs AI112395 transmembrane protein 130 Tmem130 304280 NM_001170399 1377616_at BE114214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114214 /DB_XREF=gi:8506319 /DB_XREF=UI-R-CA0-axo-d-09-0-UI.s1 /CLONE=UI-R-CA0-axo-d-09-0-UI /FEA=EST /CNT=10 /TID=Rn.18092.1 /TIER=ConsEnd /STK=3 /UG=Rn.18092 /UG_TITLE=ESTs BE114214 family with sequence similarity 92, member A1 Fam92a1 297903 XM_001053730 /// XM_002726513 /// XM_002729463 /// XM_216357 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1377617_at BF550438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550438 /DB_XREF=gi:11660168 /DB_XREF=UI-R-A1-eh-h-12-0-UI.r1 /CLONE=UI-R-A1-eh-h-12-0-UI /FEA=EST /CNT=10 /TID=Rn.15482.1 /TIER=ConsEnd /STK=3 /UG=Rn.15482 /UG_TITLE=ESTs BF550438 1377618_at AW534908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534908 /DB_XREF=gi:7177322 /DB_XREF=UI-R-BS0-anx-g-10-0-UI.s1 /CLONE=UI-R-BS0-anx-g-10-0-UI /FEA=EST /CNT=10 /TID=Rn.22346.1 /TIER=ConsEnd /STK=3 /UG=Rn.22346 /UG_TITLE=ESTs AW534908 Kruppel-like factor 7 (ubiquitous) Klf7 363243 NM_001108800 0007409 // axonogenesis // not recorded /// 0007411 // axon guidance // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0048813 // dendrite morphogenesis // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded 1377619_at AI407932 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407932 /DB_XREF=gi:4251436 /DB_XREF=EST236222 /CLONE=ROVEE38 /FEA=EST /CNT=10 /TID=Rn.24770.1 /TIER=ConsEnd /STK=3 /UG=Rn.24770 /UG_TITLE=ESTs, Weakly similar to T26935 hypothetical protein Y45F10D.8 - Caenorhabditis elegans (C.elegans) AI407932 similar to WD repeat domain 36 LOC688637 688637 XM_001067706 /// XM_002725323 0006364 // rRNA processing // inferred from electronic annotation 0032040 // small-subunit processome // inferred from electronic annotation 1377620_at BI292731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292731 /DB_XREF=gi:14953528 /DB_XREF=UI-R-DO0-ciy-i-14-0-UI.s1 /CLONE=UI-R-DO0-ciy-i-14-0-UI /FEA=EST /CNT=9 /TID=Rn.3998.1 /TIER=ConsEnd /STK=3 /UG=Rn.3998 /UG_TITLE=ESTs BI292731 zinc finger protein 655 Znf655 360764 NM_001008362 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007346 // regulation of mitotic cell cycle // not recorded /// 0007346 // regulation of mitotic cell cycle // inferred from sequence or structural similarity /// 0051318 // G1 phase // not recorded /// 0051318 // G1 phase // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1377621_at AI413033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI413033 /DB_XREF=gi:4256537 /DB_XREF=EST241334 /CLONE=RBRDZ66 /FEA=EST /CNT=9 /TID=Rn.19653.1 /TIER=ConsEnd /STK=3 /UG=Rn.19653 /UG_TITLE=ESTs AI413033 1377622_at AI717078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717078 /DB_XREF=gi:5034334 /DB_XREF=UI-R-Y0-acu-f-11-0-UI.s1 /CLONE=UI-R-Y0-acu-f-11-0-UI /FEA=EST /CNT=9 /TID=Rn.23988.1 /TIER=ConsEnd /STK=3 /UG=Rn.23988 /UG_TITLE=ESTs AI717078 remodeling and spacing factor 1 Rsf1 308839 XM_001064125 /// XM_218939 0006334 // nucleosome assembly // not recorded /// 0006338 // chromatin remodeling // not recorded /// 0006352 // transcription initiation // not recorded /// 0016584 // nucleosome positioning // not recorded /// 0043392 // negative regulation of DNA binding // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0050434 // positive regulation of viral transcription // not recorded 0005634 // nucleus // not recorded /// 0031213 // RSF complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016887 // ATPase activity // not recorded /// 0042393 // histone binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1377623_at AA925355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925355 /DB_XREF=gi:4236546 /DB_XREF=UI-R-A1-ee-b-12-0-UI.s1 /CLONE=UI-R-A1-ee-b-12-0-UI /FEA=EST /CNT=9 /TID=Rn.15506.1 /TIER=ConsEnd /STK=3 /UG=Rn.15506 /UG_TITLE=ESTs AA925355 mex-3 homolog D (C. elegans) Mex3d 299613 XM_001076492 /// XM_234921 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1377624_at BI303922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303922 /DB_XREF=gi:14980202 /DB_XREF=UI-R-DR0-cjb-l-18-0-UI.s1 /CLONE=UI-R-DR0-cjb-l-18-0-UI /FEA=EST /CNT=9 /TID=Rn.23804.1 /TIER=ConsEnd /STK=3 /UG=Rn.23804 /UG_TITLE=ESTs BI303922 GTP-binding protein 10 (putative) Gtpbp10 312054 NM_001100815 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005525 // GTP binding // inferred from electronic annotation 1377625_at BF560079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF560079 /DB_XREF=gi:11669809 /DB_XREF=UI-R-A1-ew-c-04-0-UI.r1 /CLONE=UI-R-A1-ew-c-04-0-UI /FEA=EST /CNT=9 /TID=Rn.8742.1 /TIER=ConsEnd /STK=3 /UG=Rn.8742 /UG_TITLE=ESTs, Weakly similar to T28052 hypothetical protein ZK858.7 - Caenorhabditis elegans (C.elegans) BF560079 tRNA methyltransferase 6 homolog (S. cerevisiae) Trmt6 311441 NM_001107779 0006413 // translational initiation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred from electronic annotation 1377626_at AA924350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924350 /DB_XREF=gi:4234490 /DB_XREF=UI-R-A1-dr-c-01-0-UI.s3 /CLONE=UI-R-A1-dr-c-01-0-UI /FEA=EST /CNT=9 /TID=Rn.6966.1 /TIER=ConsEnd /STK=3 /UG=Rn.6966 /UG_TITLE=ESTs AA924350 Hypothetical protein LOC690768 LOC690768 690768 XM_001075548 1377627_at BI287007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287007 /DB_XREF=gi:14942194 /DB_XREF=UI-R-CT0s-can-g-11-0-UI.s1 /CLONE=UI-R-CT0s-can-g-11-0-UI /FEA=EST /CNT=9 /TID=Rn.17394.1 /TIER=ConsEnd /STK=3 /UG=Rn.17394 /UG_TITLE=ESTs BI287007 UTP20, small subunit (SSU) processome component, homolog (yeast) Utp20 314713 NM_001191779 /// XM_002726880 /// XM_235023 0006364 // rRNA processing // not recorded 0005730 // nucleolus // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1377628_at AW523327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523327 /DB_XREF=gi:7165712 /DB_XREF=UI-R-BO0-aif-a-05-0-UI.s1 /CLONE=UI-R-BO0-aif-a-05-0-UI /FEA=EST /CNT=12 /TID=Rn.40782.1 /TIER=ConsEnd /STK=3 /UG=Rn.40782 /UG_TITLE=ESTs, Weakly similar to BE16 MOUSE BRAIN PROTEIN E161 (M.musculus) AW523327 1377629_at AA874846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA874846 /DB_XREF=gi:4230729 /DB_XREF=UI-R-E0-cg-h-01-0-UI.s1 /CLONE=UI-R-E0-cg-h-01-0-UI /FEA=EST /CNT=11 /TID=Rn.7221.1 /TIER=ConsEnd /STK=3 /UG=Rn.7221 /UG_TITLE=ESTs AA874846 1377630_at AI408602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408602 /DB_XREF=gi:4252106 /DB_XREF=EST236892 /CLONE=ROVEJ45 /FEA=EST /CNT=11 /TID=Rn.24284.1 /TIER=ConsEnd /STK=3 /UG=Rn.24284 /UG_TITLE=ESTs, Weakly similar to NED4 MOUSE NEDD-4 PROTEIN (M.musculus) AI408602 tetraspanin 13 Tspan13 366602 NM_001013244 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1377631_at BM389001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389001 /DB_XREF=gi:18189054 /DB_XREF=UI-R-DZ0-ckn-l-20-0-UI.s1 /CLONE=UI-R-DZ0-ckn-l-20-0-UI /FEA=EST /CNT=10 /TID=Rn.48144.1 /TIER=ConsEnd /STK=3 /UG=Rn.48144 /UG_TITLE=ESTs, Weakly similar to 1917150A collagen:SUBUNIT=alpha1:ISOTYPE=VIII (R.norvegicus) BM389001 procollagen, type IX, alpha 3 Col9a3 362285 NM_001108611 1377632_at AW251195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251195 /DB_XREF=gi:6594786 /DB_XREF=UI-R-BJ0-adf-c-08-0-UI.s1 /CLONE=UI-R-BJ0-adf-c-08-0-UI /FEA=EST /CNT=9 /TID=Rn.22029.1 /TIER=ConsEnd /STK=3 /UG=Rn.22029 /UG_TITLE=ESTs, Highly similar to TIM4 RAT METALLOPROTEINASE INHIBITOR 4 PRECURSOR (R.norvegicus) AW251195 tissue inhibitor of metalloproteinase 4 Timp4 680130 NM_001109393 0007417 // central nervous system development // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042698 // ovulation cycle // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0030017 // sarcomere // inferred from direct assay 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008191 // metalloendopeptidase inhibitor activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377633_a_at AW918411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918411 /DB_XREF=gi:8084187 /DB_XREF=EST349715 /CLONE=RGIER90 /FEA=EST /CNT=9 /TID=Rn.21514.1 /TIER=ConsEnd /STK=3 /UG=Rn.21514 /UG_TITLE=ESTs AW918411 STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae) Stt3a 500972 NM_001134749 0006486 // protein glycosylation // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0008250 // oligosaccharyltransferase complex // inferred from electronic annotation /// 0008250 // oligosaccharyltransferase complex // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004576 // oligosaccharyl transferase activity // inferred from electronic annotation 1377634_at AI715220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715220 /DB_XREF=gi:5032473 /DB_XREF=UI-R-Y0-abn-g-04-0-UI.s1 /CLONE=UI-R-Y0-abn-g-04-0-UI /FEA=EST /CNT=9 /TID=Rn.20715.1 /TIER=ConsEnd /STK=3 /UG=Rn.20715 /UG_TITLE=ESTs, Highly similar to NIP2 MOUSE BCL2ADENOVIRUS E1B 19-KDA PROTEIN-INTERACTING PROTEIN 2 (M.musculus) AI715220 BCL2/adenovirus E1B interacting protein 2 Bnip2 300811 NM_001106835 0006915 // apoptosis // not recorded 0005635 // nuclear envelope // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005515 // protein binding // not recorded 1377635_at BM389350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389350 /DB_XREF=gi:18189403 /DB_XREF=UI-R-CN1-cjk-a-11-0-UI.s1 /CLONE=UI-R-CN1-cjk-a-11-0-UI /FEA=EST /CNT=9 /TID=Rn.3928.1 /TIER=ConsEnd /STK=3 /UG=Rn.3928 /UG_TITLE=ESTs, Weakly similar to FMO1 RAT DIMETHYLANILINE MONOOXYGENASE (R.norvegicus) BM389350 flavin containing monooxygenase 2 Fmo2 246245 NM_144737 0006082 // organic acid metabolic process // inferred from electronic annotation /// 0006082 // organic acid metabolic process // not recorded /// 0006739 // NADP metabolic process // not recorded /// 0006739 // NADP metabolic process // inferred from electronic annotation /// 0006800 // oxygen and reactive oxygen species metabolic process // inferred from electronic annotation /// 0006800 // oxygen and reactive oxygen species metabolic process // not recorded /// 0006805 // xenobiotic metabolic process // inferred from electronic annotation /// 0006805 // xenobiotic metabolic process // not recorded /// 0009404 // toxin metabolic process // inferred from electronic annotation /// 0009404 // toxin metabolic process // not recorded /// 0017144 // drug metabolic process // inferred from electronic annotation /// 0017144 // drug metabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0070995 // NADPH oxidation // inferred from electronic annotation /// 0070995 // NADPH oxidation // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031227 // intrinsic to endoplasmic reticulum membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004497 // monooxygenase activity // not recorded /// 0004499 // flavin-containing monooxygenase activity // inferred from electronic annotation /// 0004499 // flavin-containing monooxygenase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from electronic annotation 1377636_at BE109363 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109363 /DB_XREF=gi:8501468 /DB_XREF=UI-R-BJ1-aur-b-08-0-UI.s1 /CLONE=UI-R-BJ1-aur-b-08-0-UI /FEA=EST /CNT=8 /TID=Rn.48646.1 /TIER=ConsEnd /STK=3 /UG=Rn.48646 /UG_TITLE=ESTs BE109363 1377637_at AW916093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916093 /DB_XREF=gi:8081810 /DB_XREF=EST347397 /CLONE=RGIDF89 /FEA=EST /CNT=8 /TID=Rn.20376.1 /TIER=ConsEnd /STK=3 /UG=Rn.20376 /UG_TITLE=ESTs AW916093 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 B3gnt5 116740 NM_053932 0006486 // protein glycosylation // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0008152 // metabolic process // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008378 // galactosyltransferase activity // inferred from electronic annotation /// 0008457 // beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0008457 // beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity // not recorded /// 0008917 // lipopolysaccharide N-acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0008917 // lipopolysaccharide N-acetylglucosaminyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1377638_at AI549060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549060 /DB_XREF=gi:4466548 /DB_XREF=UI-R-C3-tq-a-12-0-UI.s1 /CLONE=UI-R-C3-tq-a-12-0-UI /FEA=EST /CNT=8 /TID=Rn.29947.1 /TIER=ConsEnd /STK=3 /UG=Rn.29947 /UG_TITLE=ESTs AI549060 1377639_at BI275896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275896 /DB_XREF=gi:14920280 /DB_XREF=UI-R-CX0-bxh-g-10-0-UI.s1 /CLONE=UI-R-CX0-bxh-g-10-0-UI /FEA=EST /CNT=8 /TID=Rn.40141.1 /TIER=ConsEnd /STK=3 /UG=Rn.40141 /UG_TITLE=ESTs BI275896 adipocyte-specific adhesion molecule Asam 286939 NM_173154 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 1377640_at AA945708 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945708 /DB_XREF=gi:4132581 /DB_XREF=EST201207 /CLONE=RLUAS20 /FEA=EST /CNT=8 /TID=Rn.6632.1 /TIER=ConsEnd /STK=3 /UG=Rn.6632 /UG_TITLE=ESTs AA945708 1377641_at BE100646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100646 /DB_XREF=gi:8492543 /DB_XREF=UI-R-BJ1-auk-g-08-0-UI.s1 /CLONE=UI-R-BJ1-auk-g-08-0-UI /FEA=EST /CNT=8 /TID=Rn.47423.1 /TIER=ConsEnd /STK=3 /UG=Rn.47423 /UG_TITLE=ESTs BE100646 1377642_at BE349669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE349669 /DB_XREF=gi:9261522 /DB_XREF=hq41d08.x1 /CLONE=IMAGE:3121935 /FEA=EST /CNT=8 /TID=Rn.22360.1 /TIER=ConsEnd /STK=3 /UG=Rn.22360 /UG_TITLE=ESTs BE349669 caveolin 2 Cav2 363425 NM_131914 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0001937 // negative regulation of endothelial cell proliferation // inferred from sequence or structural similarity /// 0001937 // negative regulation of endothelial cell proliferation // inferred from electronic annotation /// 0006906 // vesicle fusion // not recorded /// 0006906 // vesicle fusion // inferred from sequence or structural similarity /// 0006906 // vesicle fusion // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0007005 // mitochondrion organization // inferred from sequence or structural similarity /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007029 // endoplasmic reticulum organization // not recorded /// 0007029 // endoplasmic reticulum organization // inferred from sequence or structural similarity /// 0007029 // endoplasmic reticulum organization // inferred from electronic annotation /// 0007088 // regulation of mitosis // inferred from electronic annotation /// 0007088 // regulation of mitosis // not recorded /// 0007268 // synaptic transmission // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0016050 // vesicle organization // not recorded /// 0016050 // vesicle organization // inferred from electronic annotation /// 0048278 // vesicle docking // not recorded /// 0048278 // vesicle docking // inferred from sequence or structural similarity /// 0048278 // vesicle docking // inferred from electronic annotation /// 0048741 // skeletal muscle fiber development // not recorded /// 0048741 // skeletal muscle fiber development // inferred from sequence or structural similarity /// 0048741 // skeletal muscle fiber development // inferred from electronic annotation /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0051259 // protein oligomerization // not recorded /// 0060161 // positive regulation of dopamine receptor signaling pathway // not recorded /// 0060161 // positive regulation of dopamine receptor signaling pathway // inferred from sequence or structural similarity /// 0060161 // positive regulation of dopamine receptor signaling pathway // inferred from electronic annotation /// 0070836 // caveola assembly // not recorded /// 0070836 // caveola assembly // inferred from sequence or structural similarity /// 0070836 // caveola assembly // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005901 // caveola // inferred from direct assay /// 0005901 // caveola // not recorded /// 0005901 // caveola // inferred from sequence or structural similarity /// 0005901 // caveola // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from electronic annotation /// 0030133 // transport vesicle // not recorded /// 0031234 // extrinsic to internal side of plasma membrane // not recorded /// 0031234 // extrinsic to internal side of plasma membrane // inferred from sequence or structural similarity /// 0031234 // extrinsic to internal side of plasma membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000149 // SNARE binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019905 // syntaxin binding // inferred from direct assay /// 0031748 // D1 dopamine receptor binding // not recorded /// 0031748 // D1 dopamine receptor binding // inferred from sequence or structural similarity /// 0031748 // D1 dopamine receptor binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0051219 // phosphoprotein binding // inferred from physical interaction 1377643_at BI291489 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291489 /DB_XREF=gi:14951079 /DB_XREF=UI-R-DM0-cis-d-21-0-UI.s1 /CLONE=UI-R-DM0-cis-d-21-0-UI /FEA=EST /CNT=8 /TID=Rn.12766.1 /TIER=ConsEnd /STK=3 /UG=Rn.12766 /UG_TITLE=ESTs, Highly similar to HXDA MOUSE HOMEOBOX PROTEIN HOX-D10 (M.musculus) BI291489 homeo box D10 Hoxd10 303991 NM_001107094 0001501 // skeletal system development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0008344 // adult locomotory behavior // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009954 // proximal/distal pattern formation // not recorded /// 0021520 // spinal cord motor neuron cell fate specification // not recorded /// 0030326 // embryonic limb morphogenesis // not recorded /// 0035136 // forelimb morphogenesis // not recorded /// 0035137 // hindlimb morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048935 // peripheral nervous system neuron development // not recorded /// 0050905 // neuromuscular process // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1377644_at BF284809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284809 /DB_XREF=gi:11215879 /DB_XREF=EST449400 /CLONE=RGIEW63 /FEA=EST /CNT=8 /TID=Rn.12969.1 /TIER=ConsEnd /STK=3 /UG=Rn.12969 /UG_TITLE=ESTs BF284809 similar to RIKEN cDNA 4921524J17 RGD1308706 291925 NM_001134421 1377645_at AA892331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892331 /DB_XREF=gi:3019210 /DB_XREF=EST196134 /CLONE=RKIAP17 /FEA=EST /CNT=8 /TID=Rn.3653.1 /TIER=ConsEnd /STK=3 /UG=Rn.3653 /UG_TITLE=ESTs AA892331 similar to hypothetical protein LOC360479 360479 NM_001014115 1377646_at AI177360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177360 /DB_XREF=gi:3727998 /DB_XREF=EST220978 /CLONE=RPLBY11 /FEA=EST /CNT=8 /TID=Rn.3093.1 /TIER=ConsEnd /STK=3 /UG=Rn.3093 /UG_TITLE=ESTs AI177360 1377647_at AA924088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924088 /DB_XREF=gi:4234180 /DB_XREF=UI-R-A1-du-g-09-0-UI.s1 /CLONE=UI-R-A1-du-g-09-0-UI /FEA=EST /CNT=8 /TID=Rn.7761.1 /TIER=ConsEnd /STK=3 /UG=Rn.7761 /UG_TITLE=ESTs AA924088 sex comb on midleg homolog 1 (Drosophila) Scmh1 362581 NM_001109669 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // not recorded 1377648_at BF414047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414047 /DB_XREF=gi:11402036 /DB_XREF=UI-R-BJ2-bol-g-07-0-UI.s1 /CLONE=UI-R-BJ2-bol-g-07-0-UI /FEA=EST /CNT=8 /TID=Rn.2666.1 /TIER=ConsEnd /STK=3 /UG=Rn.2666 /UG_TITLE=ESTs BF414047 Family with sequence similarity 120B Fam120b 308218 NM_001107466 0005515 // protein binding // not recorded 1377649_at BM383391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383391 /DB_XREF=gi:18183444 /DB_XREF=UI-R-DM1-cka-o-03-0-UI.s1 /CLONE=UI-R-DM1-cka-o-03-0-UI /FEA=EST /CNT=8 /TID=Rn.13316.1 /TIER=ConsEnd /STK=3 /UG=Rn.13316 /UG_TITLE=ESTs BM383391 1377650_at BF283610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283610 /DB_XREF=gi:11214680 /DB_XREF=EST448201 /CLONE=RGIEE56 /FEA=EST /CNT=8 /TID=Rn.37226.1 /TIER=ConsEnd /STK=3 /UG=Rn.37226 /UG_TITLE=ESTs BF283610 1377651_at AI577848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577848 /DB_XREF=gi:4562224 /DB_XREF=UI-R-AB0-vw-c-02-0-UI.s1 /CLONE=UI-R-AB0-vw-c-02-0-UI /FEA=EST /CNT=8 /TID=Rn.21406.2 /TIER=ConsEnd /STK=3 /UG=Rn.21406 /UG_TITLE=ESTs AI577848 Triple functional domain (PTPRF interacting) Trio 310192 NM_001107658 0006915 // apoptosis // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1377652_at BE103109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103109 /DB_XREF=gi:8495208 /DB_XREF=UI-R-BX0-are-e-09-0-UI.s1 /CLONE=UI-R-BX0-are-e-09-0-UI /FEA=EST /CNT=8 /TID=Rn.37933.1 /TIER=ConsEnd /STK=3 /UG=Rn.37933 /UG_TITLE=ESTs BE103109 1377653_at BI293195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293195 /DB_XREF=gi:14954463 /DB_XREF=UI-R-DK0-cdk-h-04-0-UI.s1 /CLONE=UI-R-DK0-cdk-h-04-0-UI /FEA=EST /CNT=8 /TID=Rn.24692.1 /TIER=ConsEnd /STK=3 /UG=Rn.24692 /UG_TITLE=ESTs, Moderately similar to synaptic nuclei expressed gene 2 (Homo sapiens) (H.sapiens) BI293195 similar to mKIAA1011 protein LOC366669 366669 XR_085854 /// XR_086279 0016021 // integral to membrane // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation 1377654_at BE328936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE328936 /DB_XREF=gi:9202712 /DB_XREF=hq32d09.x1 /CLONE=IMAGE:3121073 /FEA=EST /CNT=8 /TID=Rn.12310.1 /TIER=ConsEnd /STK=3 /UG=Rn.12310 /UG_TITLE=ESTs BE328936 family with sequence similarity 3, member A Fam3a 501664 NM_001109324 1377655_at BF562838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562838 /DB_XREF=gi:11672568 /DB_XREF=UI-R-BJ0p-aiq-a-11-0-UI.r1 /CLONE=UI-R-BJ0p-aiq-a-11-0-UI /FEA=EST /CNT=8 /TID=Rn.13902.1 /TIER=ConsEnd /STK=3 /UG=Rn.13902 /UG_TITLE=ESTs BF562838 Fibroblast growth factor 12 Fgf12 170630 NM_130814 0007254 // JNK cascade // inferred from electronic annotation /// 0007254 // JNK cascade // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005104 // fibroblast growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded 1377656_at BG375054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375054 /DB_XREF=gi:13299526 /DB_XREF=UI-R-CV1-bst-e-12-0-UI.s1 /CLONE=UI-R-CV1-bst-e-12-0-UI /FEA=EST /CNT=12 /TID=Rn.12075.2 /TIER=ConsEnd /STK=3 /UG=Rn.12075 /UG_TITLE=ESTs, Weakly similar to MK16_YEAST MAK16 protein (S.cerevisiae) BG375054 MAK16 homolog (S. cerevisiae) Mak16 306526 NM_001014002 1377657_at AW525218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525218 /DB_XREF=gi:7167603 /DB_XREF=UI-R-BJ0p-aip-b-09-0-UI.s1 /CLONE=UI-R-BJ0p-aip-b-09-0-UI /FEA=EST /CNT=12 /TID=Rn.35504.1 /TIER=ConsEnd /STK=3 /UG=Rn.35504 /UG_TITLE=ESTs AW525218 inhibitor of Bruton agammaglobulinemia tyrosine kinase Ibtk 315858 XM_001062352 /// XM_236481 0005515 // protein binding // inferred from electronic annotation 1377658_at AI170431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170431 /DB_XREF=gi:3710471 /DB_XREF=EST216358 /CLONE=RLUCN26 /FEA=EST /CNT=11 /TID=Rn.8195.1 /TIER=ConsEnd /STK=3 /UG=Rn.8195 /UG_TITLE=ESTs AI170431 actin filament associated protein 1-like 1 Afap1l1 291565 NM_001106142 0005515 // protein binding // not recorded 1377659_at BI302005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302005 /DB_XREF=gi:14978280 /DB_XREF=UI-R-DL0-cip-o-09-0-UI.s1 /CLONE=UI-R-DL0-cip-o-09-0-UI /FEA=EST /CNT=11 /TID=Rn.54860.1 /TIER=ConsEnd /STK=3 /UG=Rn.54860 /UG_TITLE=ESTs, Highly similar to MLF1_MOUSE Myeloid leukemia factor 1 (Myelodysplasia-myeloid leukemia factor 1) (Hematopoietic lineage switch 7) (M.musculus) BI302005 myeloid leukemia factor 1 Mlf1 310483 NM_001107680 0002318 // myeloid progenitor cell differentiation // not recorded /// 0006350 // transcription // not recorded /// 0007050 // cell cycle arrest // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0019904 // protein domain specific binding // not recorded 1377660_at BM387540 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387540 /DB_XREF=gi:18187593 /DB_XREF=UI-R-CN1-cjl-g-14-0-UI.s1 /CLONE=UI-R-CN1-cjl-g-14-0-UI /FEA=EST /CNT=11 /TID=Rn.15414.1 /TIER=ConsEnd /STK=3 /UG=Rn.15414 /UG_TITLE=ESTs, Weakly similar to TTHY RAT TRANSTHYRETIN PRECURSOR (R.norvegicus) BM387540 similar to transthyretin (4L369) RGD1309350 293613 NM_001134507 0006810 // transport // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0005739 // mitochondrion // not recorded 0016787 // hydrolase activity // not recorded 1377661_at AW524539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524539 /DB_XREF=gi:7166924 /DB_XREF=UI-R-BO0-ahz-f-03-0-UI.s1 /CLONE=UI-R-BO0-ahz-f-03-0-UI /FEA=EST /CNT=10 /TID=Rn.9126.1 /TIER=ConsEnd /STK=3 /UG=Rn.9126 /UG_TITLE=ESTs AW524539 fibroblast growth factor receptor substrate 2 Frs2 314850 NM_001108097 0000187 // activation of MAPK activity // not recorded /// 0001702 // gastrulation with mouth forming second // not recorded /// 0001759 // organ induction // not recorded /// 0003281 // ventricular septum development // not recorded /// 0007165 // signal transduction // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007405 // neuroblast proliferation // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0008595 // anterior/posterior axis specification, embryo // not recorded /// 0030900 // forebrain development // not recorded /// 0046619 // optic placode formation involved in camera-type eye // not recorded /// 0050678 // regulation of epithelial cell proliferation // not recorded /// 0060527 // prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis // not recorded 0005737 // cytoplasm // not recorded /// 0005768 // endosome // not recorded /// 0005886 // plasma membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005068 // transmembrane receptor protein tyrosine kinase adaptor protein activity // not recorded /// 0005104 // fibroblast growth factor receptor binding // not recorded /// 0005158 // insulin receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1377662_at AI176041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176041 /DB_XREF=gi:3726679 /DB_XREF=EST219617 /CLONE=ROVBJ74 /FEA=EST /CNT=10 /TID=Rn.17689.1 /TIER=ConsEnd /STK=3 /UG=Rn.17689 /UG_TITLE=ESTs, Highly similar to PIR_MOUSE Pirin (M.musculus) AI176041 pirin (iron-binding nuclear protein) Pir 363465 NM_001009474 0005634 // nucleus // inferred from electronic annotation 0046872 // metal ion binding // inferred from electronic annotation 1377663_at AI598323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598323 /DB_XREF=gi:4607371 /DB_XREF=EST250026 /CLONE=REMDO17 /FEA=EST /CNT=10 /TID=Rn.25153.1 /TIER=ConsEnd /STK=3 /UG=Rn.25153 /UG_TITLE=ESTs, Weakly similar to plysia ras-related homolog A2 (Rattus norvegicus) (R.norvegicus) AI598323 Rho family GTPase 3 Rnd3 295588 NM_001007641 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1377664_at AI101205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101205 /DB_XREF=gi:3704604 /DB_XREF=EST210494 /CLONE=RBRBG85 /FEA=EST /CNT=9 /TID=Rn.6424.1 /TIER=ConsEnd /STK=3 /UG=Rn.6424 /UG_TITLE=ESTs AI101205 KARP-1 binding protein 1 Kab 171457 XM_002724894 /// XM_002728034 1377665_at AA998979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998979 /DB_XREF=gi:4293186 /DB_XREF=UI-R-C0-ig-g-10-0-UI.s1 /CLONE=UI-R-C0-ig-g-10-0-UI /FEA=EST /CNT=9 /TID=Rn.11970.1 /TIER=ConsEnd /STK=3 /UG=Rn.11970 /UG_TITLE=ESTs, Moderately similar to T00051 hypothetical protein KIAA0404 (H.sapiens) AA998979 ATG2 autophagy related 2 homolog A (S. cerevisiae) Atg2a 689688 NM_001109545 1377666_at BI293004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293004 /DB_XREF=gi:14954080 /DB_XREF=UI-R-DK0-cdj-a-02-0-UI.s1 /CLONE=UI-R-DK0-cdj-a-02-0-UI /FEA=EST /CNT=9 /TID=Rn.22857.1 /TIER=ConsEnd /STK=3 /UG=Rn.22857 /UG_TITLE=ESTs BI293004 choline dehydrogenase Chdh 290551 NM_198731 0006066 // alcohol metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from mutant phenotype /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation 0008812 // choline dehydrogenase activity // inferred from mutant phenotype /// 0008812 // choline dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016614 // oxidoreductase activity, acting on CH-OH group of donors // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1377667_at AW141706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141706 /DB_XREF=gi:6161529 /DB_XREF=EST291785 /CLONE=RGICD86 /FEA=EST /CNT=9 /TID=Rn.22569.1 /TIER=ConsEnd /STK=3 /UG=Rn.22569 /UG_TITLE=ESTs, Weakly similar to T21325 hypothetical protein F25B3.6 - Caenorhabditis elegans (C.elegans) AW141706 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) Rtf1 366169 NM_001108958 0006352 // transcription initiation // inferred from electronic annotation /// 0016570 // histone modification // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1377668_at BI276788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276788 /DB_XREF=gi:14922035 /DB_XREF=UI-R-CX0-bxl-e-05-0-UI.s1 /CLONE=UI-R-CX0-bxl-e-05-0-UI /FEA=EST /CNT=8 /TID=Rn.26331.1 /TIER=ConsEnd /STK=3 /UG=Rn.26331 /UG_TITLE=ESTs, Highly similar to A56418 transcription factor delta - mouse (M.musculus) BI276788 1377669_at BM389524 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389524 /DB_XREF=gi:18189577 /DB_XREF=UI-R-CN1-cjn-b-16-0-UI.s1 /CLONE=UI-R-CN1-cjn-b-16-0-UI /FEA=EST /CNT=8 /TID=Rn.37360.1 /TIER=ConsEnd /STK=3 /UG=Rn.37360 /UG_TITLE=ESTs BM389524 RAB27A, member RAS oncogene family Rab27a 50645 NM_017317 0006605 // protein targeting // inferred from electronic annotation /// 0006605 // protein targeting // not recorded /// 0006887 // exocytosis // not recorded /// 0006887 // exocytosis // traceable author statement /// 0006887 // exocytosis // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation /// 0007596 // blood coagulation // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0030318 // melanocyte differentiation // inferred from electronic annotation /// 0030318 // melanocyte differentiation // not recorded /// 0032400 // melanosome localization // inferred from electronic annotation /// 0032400 // melanosome localization // not recorded /// 0032402 // melanosome transport // inferred from electronic annotation /// 0032402 // melanosome transport // not recorded /// 0043316 // cytotoxic T cell degranulation // inferred from electronic annotation /// 0043316 // cytotoxic T cell degranulation // not recorded /// 0043320 // natural killer cell degranulation // inferred from electronic annotation /// 0043320 // natural killer cell degranulation // not recorded /// 0043473 // pigmentation // inferred from electronic annotation /// 0043473 // pigmentation // not recorded /// 0051875 // pigment granule localization // not recorded /// 0051875 // pigment granule localization // inferred from electronic annotation /// 0051904 // pigment granule transport // not recorded /// 0051904 // pigment granule transport // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay /// 0030141 // stored secretory granule // not recorded /// 0030141 // stored secretory granule // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0030667 // secretory granule membrane // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0042470 // melanosome // not recorded /// 0070382 // exocytic vesicle // inferred from electronic annotation /// 0070382 // exocytic vesicle // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0005525 // GTP binding // inferred from electronic annotation /// 0031489 // myosin V binding // inferred from electronic annotation /// 0031489 // myosin V binding // not recorded 1377670_at AW915580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915580 /DB_XREF=gi:8081280 /DB_XREF=EST346884 /CLONE=RGICY02 /FEA=EST /CNT=8 /TID=Rn.27595.1 /TIER=ConsEnd /STK=3 /UG=Rn.27595 /UG_TITLE=ESTs, Moderately similar to PCFB_HUMAN PRE-MRNA CLEAVAGE COMPLEX II PROTEIN PCF11 (H.sapiens) AW915580 PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae) Pcf11 361605 XM_001062815 /// XM_341883 0008380 // RNA splicing // not recorded 1377671_at BI279816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279816 /DB_XREF=gi:14927994 /DB_XREF=UI-R-CU0s-cbr-c-03-0-UI.s1 /CLONE=UI-R-CU0s-cbr-c-03-0-UI /FEA=EST /CNT=8 /TID=Rn.8244.1 /TIER=ConsEnd /STK=3 /UG=Rn.8244 /UG_TITLE=ESTs BI279816 1377672_at BI300997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300997 /DB_XREF=gi:14977277 /DB_XREF=UI-R-DK0-cfk-g-04-0-UI.s2 /CLONE=UI-R-DK0-cfk-g-04-0-UI /FEA=EST /CNT=8 /TID=Rn.17431.1 /TIER=ConsEnd /STK=3 /UG=Rn.17431 /UG_TITLE=ESTs BI300997 similar to Sulfotransferase K1 (rSULT1C2) /// sulfotransferase family, cytosolic, 1C, member 2 RGD1559960 /// Sult1c2 171072 /// 501084 NM_133547 /// XM_002727150 /// XM_576496 0051923 // sulfation // not recorded 0005764 // lysosome // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0008146 // sulfotransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation 1377673_at BF411339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411339 /DB_XREF=gi:11399321 /DB_XREF=UI-R-CN0-bmj-c-06-0-UI.s1 /CLONE=UI-R-CN0-bmj-c-06-0-UI /FEA=EST /CNT=8 /TID=Rn.21614.1 /TIER=ConsEnd /STK=3 /UG=Rn.21614 /UG_TITLE=ESTs BF411339 1377674_at AI408930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408930 /DB_XREF=gi:4252434 /DB_XREF=EST237221 /CLONE=RKIDR43 /FEA=EST /CNT=8 /TID=Rn.18577.1 /TIER=ConsEnd /STK=3 /UG=Rn.18577 /UG_TITLE=ESTs AI408930 similar to PHF21A protein RGD1560612 362166 XM_001070000 /// XM_002726234 /// XM_002726235 /// XM_002729198 /// XM_342467 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377675_at AI177743 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177743 /DB_XREF=gi:3728381 /DB_XREF=EST221385 /CLONE=RPLCF53 /FEA=EST /CNT=8 /TID=Rn.7864.1 /TIER=ConsEnd /STK=3 /UG=Rn.7864 /UG_TITLE=ESTs AI177743 hypothetical protein LOC100302372 LOC100302372 100302372 NM_001162897 /// NM_001162898 1377676_at AI599187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599187 /DB_XREF=gi:4608235 /DB_XREF=EST250890 /CLONE=REMET48 /FEA=EST /CNT=8 /TID=Rn.24573.1 /TIER=ConsEnd /STK=3 /UG=Rn.24573 /UG_TITLE=ESTs AI599187 nuclear casein kinase and cyclin-dependent kinase substrate 1 Nucks1 64709 NM_022799 0051726 // regulation of cell cycle // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0003690 // double-stranded DNA binding // traceable author statement /// 0003697 // single-stranded DNA binding // traceable author statement 1377677_a_at AA900692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900692 /DB_XREF=gi:4233187 /DB_XREF=UI-R-E0-by-e-09-0-UI.s4 /CLONE=UI-R-E0-by-e-09-0-UI /FEA=EST /CNT=8 /TID=Rn.12094.1 /TIER=ConsEnd /STK=3 /UG=Rn.12094 /UG_TITLE=ESTs AA900692 1377678_at BI283757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283757 /DB_XREF=gi:14935815 /DB_XREF=UI-R-CW0s-cch-d-04-0-UI.s1 /CLONE=UI-R-CW0s-cch-d-04-0-UI /FEA=EST /CNT=8 /TID=Rn.11630.1 /TIER=ConsEnd /STK=3 /UG=Rn.11630 /UG_TITLE=ESTs BI283757 1377679_at BI295085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295085 /DB_XREF=gi:14958178 /DB_XREF=UI-R-DK0-cef-f-07-0-UI.s1 /CLONE=UI-R-DK0-cef-f-07-0-UI /FEA=EST /CNT=8 /TID=Rn.23365.1 /TIER=ConsEnd /STK=3 /UG=Rn.23365 /UG_TITLE=ESTs, Weakly similar to T14774 hypothetical protein DKFZp434C211.1 (H.sapiens) BI295085 1377680_at BG377887 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377887 /DB_XREF=gi:13302359 /DB_XREF=UI-R-CU0-bvg-d-05-0-UI.s1 /CLONE=UI-R-CU0-bvg-d-05-0-UI /FEA=EST /CNT=8 /TID=Rn.15499.1 /TIER=ConsEnd /STK=3 /UG=Rn.15499 /UG_TITLE=ESTs BG377887 GDNF family receptor alpha 3 Gfra3 84422 NM_053398 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0007165 // signal transduction // not recorded /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0048485 // sympathetic nervous system development // inferred from electronic annotation /// 0048485 // sympathetic nervous system development // not recorded /// 0048666 // neuron development // inferred from electronic annotation /// 0048666 // neuron development // not recorded 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded 0004872 // receptor activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008046 // axon guidance receptor activity // inferred from electronic annotation /// 0008046 // axon guidance receptor activity // not recorded 1377681_at AA925313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925313 /DB_XREF=gi:4236504 /DB_XREF=UI-R-A1-ek-f-09-0-UI.s1 /CLONE=UI-R-A1-ek-f-09-0-UI /FEA=EST /CNT=8 /TID=Rn.8261.1 /TIER=ConsEnd /STK=3 /UG=Rn.8261 /UG_TITLE=ESTs AA925313 1377682_at AW522708 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522708 /DB_XREF=gi:7165133 /DB_XREF=UI-R-BO0-ahk-c-11-0-UI.s1 /CLONE=UI-R-BO0-ahk-c-11-0-UI /FEA=EST /CNT=8 /TID=Rn.48615.1 /TIER=ConsEnd /STK=3 /UG=Rn.48615 /UG_TITLE=ESTs AW522708 1377683_at AI407061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407061 /DB_XREF=gi:4250565 /DB_XREF=EST235349 /CLONE=ROVDR45 /FEA=EST /CNT=8 /TID=Rn.44017.1 /TIER=ConsEnd /STK=3 /UG=Rn.44017 /UG_TITLE=ESTs AI407061 similar to hypothetical protein FLJ13045 RGD1307615 362084 NM_001108573 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1377684_at BE118562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118562 /DB_XREF=gi:8510667 /DB_XREF=UI-R-BJ1-azq-b-11-0-UI.s1 /CLONE=UI-R-BJ1-azq-b-11-0-UI /FEA=EST /CNT=8 /TID=Rn.34378.1 /TIER=ConsEnd /STK=3 /UG=Rn.34378 /UG_TITLE=ESTs, Weakly similar to S46723 arginine--tRNA ligase (EC 6.1.1.19), mitochondrial - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BE118562 arginyl-tRNA synthetase 2, mitochondrial Rars2 297969 NM_001106643 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006420 // arginyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004814 // arginine-tRNA ligase activity // inferred from electronic annotation /// 0004814 // arginine-tRNA ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1377685_at AW435161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435161 /DB_XREF=gi:6966468 /DB_XREF=UI-R-BJ0p-afj-c-04-0-UI.s1 /CLONE=UI-R-BJ0p-afj-c-04-0-UI /FEA=EST /CNT=7 /TID=Rn.19439.1 /TIER=ConsEnd /STK=3 /UG=Rn.19439 /UG_TITLE=ESTs AW435161 establishment of cohesion 1 homolog 1 (S. cerevisiae) Esco1 680014 NM_001126299 0006281 // DNA repair // inferred from electronic annotation 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation 1377686_at AA859337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859337 /DB_XREF=gi:4229685 /DB_XREF=UI-R-E0-cl-a-10-0-UI.s1 /CLONE=UI-R-E0-cl-a-10-0-UI /FEA=EST /CNT=7 /TID=Rn.6889.1 /TIER=ConsEnd /STK=3 /UG=Rn.6889 /UG_TITLE=ESTs AA859337 1377687_at AI009660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009660 /DB_XREF=gi:4133086 /DB_XREF=EST204111 /CLONE=RLUBG90 /FEA=EST /CNT=7 /TID=Rn.12889.1 /TIER=ConsEnd /STK=3 /UG=Rn.12889 /UG_TITLE=ESTs AI009660 zinc finger, C4H2 domain containing Zc4h2 367838 NM_001126374 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1377688_at AI136703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136703 /DB_XREF=gi:3637480 /DB_XREF=UI-R-C2p-nq-h-09-0-UI.s1 /CLONE=UI-R-C2p-nq-h-09-0-UI /FEA=EST /CNT=7 /TID=Rn.27216.1 /TIER=ConsEnd /STK=3 /UG=Rn.27216 /UG_TITLE=ESTs AI136703 1377689_at BF564273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564273 /DB_XREF=gi:11674003 /DB_XREF=UI-R-C4-all-g-04-0-UI.r1 /CLONE=UI-R-C4-all-g-04-0-UI /FEA=EST /CNT=7 /TID=Rn.47918.1 /TIER=ConsEnd /STK=3 /UG=Rn.47918 /UG_TITLE=ESTs, Moderately similar to Y166_HUMAN HYPOTHETICAL PROTEIN KIAA0166 (H.sapiens) BF564273 kinetochore associated 1 Kntc1 304477 NM_001107140 1377690_at AA818651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818651 /DB_XREF=gi:4200462 /DB_XREF=UI-R-A0-az-f-12-0-UI.s1 /CLONE=UI-R-A0-az-f-12-0-UI /FEA=EST /CNT=7 /TID=Rn.16517.1 /TIER=ConsEnd /STK=3 /UG=Rn.16517 /UG_TITLE=ESTs AA818651 signal-induced proliferation-associated 1 like 3 Sipa1l3 292771 NM_001013066 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1377691_at AI599376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599376 /DB_XREF=gi:4608424 /DB_XREF=EST251079 /CLONE=REMEN75 /FEA=EST /CNT=7 /TID=Rn.16639.1 /TIER=ConsEnd /STK=3 /UG=Rn.16639 /UG_TITLE=ESTs AI599376 SEC22 vesicle trafficking protein homolog B (S. cerevisiae) Sec22b 310710 NM_001025686 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0000139 // Golgi membrane // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0033116 // ER-Golgi intermediate compartment membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0005515 // protein binding // not recorded 1377692_at BF558563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558563 /DB_XREF=gi:11668293 /DB_XREF=UI-R-E0-dg-h-12-0-UI.r1 /CLONE=UI-R-E0-dg-h-12-0-UI /FEA=EST /CNT=7 /TID=Rn.14962.1 /TIER=ConsEnd /STK=3 /UG=Rn.14962 /UG_TITLE=ESTs BF558563 similar to RIKEN cDNA 1110018J12 RGD1565310 362697 XM_001057346 /// XM_343014 1377693_at BG374988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374988 /DB_XREF=gi:13299460 /DB_XREF=UI-R-CV1-bsw-g-11-0-UI.s1 /CLONE=UI-R-CV1-bsw-g-11-0-UI /FEA=EST /CNT=7 /TID=Rn.37934.1 /TIER=ConsEnd /STK=3 /UG=Rn.37934 /UG_TITLE=ESTs BG374988 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1377694_at AI598976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598976 /DB_XREF=gi:4608024 /DB_XREF=EST250679 /CLONE=REMDZ02 /FEA=EST /CNT=7 /TID=Rn.22672.1 /TIER=ConsEnd /STK=3 /UG=Rn.22672 /UG_TITLE=ESTs, Weakly similar to C50D2.8.p (Caenorhabditis elegans) (C.elegans) AI598976 LUC7-like 3 (S. cerevisiae) Luc7l3 360602 NM_001108291 0006915 // apoptosis // not recorded /// 0006950 // response to stress // not recorded /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // not recorded 0003729 // mRNA binding // not recorded /// 0005515 // protein binding // not recorded 1377695_at BF281135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281135 /DB_XREF=gi:11212289 /DB_XREF=EST445810 /CLONE=RGIAB55 /FEA=EST /CNT=7 /TID=Rn.32487.1 /TIER=ConsEnd /STK=3 /UG=Rn.32487 /UG_TITLE=ESTs BF281135 smoothelin-like 2 Smtnl2 679629 NM_001190998 /// XM_001053796 /// XM_002724513 1377696_at AI407755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407755 /DB_XREF=gi:4251259 /DB_XREF=EST236045 /CLONE=ROVEA25 /FEA=EST /CNT=7 /TID=Rn.17483.1 /TIER=ConsEnd /STK=3 /UG=Rn.17483 /UG_TITLE=ESTs AI407755 mesoderm development candidate 1 Mesdc1 308795 NM_001013149 1377697_at BI275738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275738 /DB_XREF=gi:14919946 /DB_XREF=UI-R-CX0-bxg-b-01-0-UI.s1 /CLONE=UI-R-CX0-bxg-b-01-0-UI /FEA=EST /CNT=7 /TID=Rn.24283.1 /TIER=ConsEnd /STK=3 /UG=Rn.24283 /UG_TITLE=ESTs BI275738 amyloid beta (A4) precursor protein-binding, family B, member 2 Apbb2 305338 XM_001077874 /// XM_223399 0001764 // neuron migration // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0007411 // axon guidance // not recorded /// 0030198 // extracellular matrix organization // not recorded /// 0030308 // negative regulation of cell growth // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045749 // negative regulation of S phase of mitotic cell cycle // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded 1377698_at AW433947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433947 /DB_XREF=gi:6965254 /DB_XREF=UI-R-BJ0p-afn-d-11-0-UI.s1 /CLONE=UI-R-BJ0p-afn-d-11-0-UI /FEA=EST /CNT=7 /TID=Rn.25180.1 /TIER=ConsEnd /STK=3 /UG=Rn.25180 /UG_TITLE=ESTs, Weakly similar to OX40L RECEPTOR PRECURSOR (R.norvegicus) AW433947 CD40 molecule, TNF receptor superfamily member 5 Cd40 171369 NM_134360 0002768 // immune response-regulating cell surface receptor signaling pathway // inferred from electronic annotation /// 0002768 // immune response-regulating cell surface receptor signaling pathway // not recorded /// 0006954 // inflammatory response // inferred from expression pattern /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // not recorded /// 0032735 // positive regulation of interleukin-12 production // inferred from electronic annotation /// 0032735 // positive regulation of interleukin-12 production // not recorded /// 0042113 // B cell activation // inferred from electronic annotation /// 0042113 // B cell activation // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0048304 // positive regulation of isotype switching to IgG isotypes // inferred from electronic annotation /// 0048304 // positive regulation of isotype switching to IgG isotypes // not recorded /// 0050776 // regulation of immune response // inferred from electronic annotation /// 0050776 // regulation of immune response // not recorded /// 0051023 // regulation of immunoglobulin secretion // inferred from electronic annotation /// 0051023 // regulation of immunoglobulin secretion // not recorded 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded 1377699_at BF395437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395437 /DB_XREF=gi:11380403 /DB_XREF=UI-R-CM0-bjk-f-06-0-UI.s1 /CLONE=UI-R-CM0-bjk-f-06-0-UI /FEA=EST /CNT=7 /TID=Rn.29793.1 /TIER=ConsEnd /STK=3 /UG=Rn.29793 /UG_TITLE=ESTs, Highly similar to BAC1 MOUSE TRANSCRIPTION REGULATOR PROTEIN BACH1 (M.musculus) BF395437 BTB and CNC homology 1, basic leucine zipper transcription factor 1 Bach1 304127 NM_001107113 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005829 // cytosol // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1377700_at BE111648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111648 /DB_XREF=gi:8503753 /DB_XREF=UI-R-BJ1-avv-c-01-0-UI.s1 /CLONE=UI-R-BJ1-avv-c-01-0-UI /FEA=EST /CNT=7 /TID=Rn.45838.1 /TIER=ConsEnd /STK=3 /UG=Rn.45838 /UG_TITLE=ESTs BE111648 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation 0000228 // nuclear chromosome // inferred from electronic annotation /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0070087 // chromo shadow domain binding // inferred from electronic annotation 1377701_at AI012404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012404 /DB_XREF=gi:3226236 /DB_XREF=EST206855 /CLONE=RPLAW74 /FEA=EST /CNT=7 /TID=Rn.17844.1 /TIER=ConsEnd /STK=3 /UG=Rn.17844 /UG_TITLE=ESTs AI012404 zinc finger, MYM-type 6 Zmym6 362602 NM_001108681 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1377702_at BG380173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380173 /DB_XREF=gi:13304645 /DB_XREF=UI-R-CS0-btp-h-06-0-UI.s1 /CLONE=UI-R-CS0-btp-h-06-0-UI /FEA=EST /CNT=7 /TID=Rn.42088.1 /TIER=ConsEnd /STK=3 /UG=Rn.42088 /UG_TITLE=ESTs, Highly similar to T09508 intron 17 purinergic receptor P2Y5 (H.sapiens) BG380173 lysophosphatidic acid receptor 6 Lpar6 691774 NM_001045843 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0045028 // purinergic nucleotide receptor activity, G-protein coupled // inferred from electronic annotation 1377703_at AA819694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819694 /DB_XREF=gi:4228765 /DB_XREF=UI-R-A0-bh-d-08-0-UI.s1 /CLONE=UI-R-A0-bh-d-08-0-UI /FEA=EST /CNT=7 /TID=Rn.24894.1 /TIER=ConsEnd /STK=3 /UG=Rn.24894 /UG_TITLE=ESTs AA819694 family with sequence similarity 122A Fam122a 309420 NM_001014029 1377704_at BE117155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117155 /DB_XREF=gi:8509260 /DB_XREF=UI-R-BS1-aym-e-05-0-UI.s1 /CLONE=UI-R-BS1-aym-e-05-0-UI /FEA=EST /CNT=7 /TID=Rn.9626.1 /TIER=ConsEnd /STK=3 /UG=Rn.9626 /UG_TITLE=ESTs BE117155 Male-specific lethal 2-like 1 (Drosophila) Msl2l1 315959 XM_001071576 /// XM_236567 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1377705_at BF549971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549971 /DB_XREF=gi:11659701 /DB_XREF=UI-R-E0-bx-f-04-0-UI.r1 /CLONE=UI-R-E0-bx-f-04-0-UI /FEA=EST /CNT=7 /TID=Rn.25559.1 /TIER=ConsEnd /STK=3 /UG=Rn.25559 /UG_TITLE=ESTs BF549971 1377706_x_at BF549971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549971 /DB_XREF=gi:11659701 /DB_XREF=UI-R-E0-bx-f-04-0-UI.r1 /CLONE=UI-R-E0-bx-f-04-0-UI /FEA=EST /CNT=7 /TID=Rn.25559.1 /TIER=ConsEnd /STK=3 /UG=Rn.25559 /UG_TITLE=ESTs BF549971 1377707_at BF417096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417096 /DB_XREF=gi:11405085 /DB_XREF=UI-R-CN0-blb-h-02-0-UI.s1 /CLONE=UI-R-CN0-blb-h-02-0-UI /FEA=EST /CNT=7 /TID=Rn.23967.1 /TIER=ConsEnd /STK=3 /UG=Rn.23967 /UG_TITLE=ESTs, Weakly similar to F15B10.1.p (Caenorhabditis elegans) (C.elegans) BF417096 solute carrier family 35, member B4 Slc35b4 296969 NM_001106590 0015788 // UDP-N-acetylglucosamine transport // not recorded /// 0015790 // UDP-xylose transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005462 // UDP-N-acetylglucosamine transmembrane transporter activity // not recorded /// 0005464 // UDP-xylose transmembrane transporter activity // not recorded 1377708_at BF281491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281491 /DB_XREF=gi:11212561 /DB_XREF=EST446082 /CLONE=RGIAK11 /FEA=EST /CNT=7 /TID=Rn.39106.1 /TIER=ConsEnd /STK=3 /UG=Rn.39106 /UG_TITLE=ESTs, Moderately similar to Y020_HUMAN HYPOTHETICAL PROTEIN KIAA0020 (H.sapiens) BF281491 hypothetical protein LOC499339 LOC499339 499339 NM_001025036 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1377709_at AI072532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072532 /DB_XREF=gi:3398726 /DB_XREF=UI-R-C2-ni-d-05-0-UI.s1 /CLONE=UI-R-C2-ni-d-05-0-UI /FEA=EST /CNT=7 /TID=Rn.13629.1 /TIER=ConsEnd /STK=3 /UG=Rn.13629 /UG_TITLE=ESTs AI072532 1377710_at AI385197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385197 /DB_XREF=gi:4197979 /DB_XREF=UI-R-E0-ce-b-12-0-UI.s1 /CLONE=UI-R-E0-ce-b-12-0-UI /FEA=EST /CNT=7 /TID=Rn.16831.1 /TIER=ConsEnd /STK=3 /UG=Rn.16831 /UG_TITLE=ESTs AI385197 1377711_at BF284137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284137 /DB_XREF=gi:11215207 /DB_XREF=EST448728 /CLONE=RGIEL43 /FEA=EST /CNT=7 /TID=Rn.11893.1 /TIER=ConsEnd /STK=3 /UG=Rn.11893 /UG_TITLE=ESTs BF284137 1377712_at AI556865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556865 /DB_XREF=gi:4489228 /DB_XREF=UI-R-C2p-ro-c-11-0-UI.s1 /CLONE=UI-R-C2p-ro-c-11-0-UI /FEA=EST /CNT=7 /TID=Rn.26950.1 /TIER=ConsEnd /STK=3 /UG=Rn.26950 /UG_TITLE=ESTs AI556865 1377713_at AI639381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639381 /DB_XREF=gi:4700415 /DB_XREF=rx01495s /CLONE=rx01495 /FEA=EST /CNT=7 /TID=Rn.37862.1 /TIER=ConsEnd /STK=3 /UG=Rn.37862 /UG_TITLE=ESTs AI639381 forkhead box N3 Foxn3 314374 NM_001108047 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1377714_at AI030979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030979 /DB_XREF=gi:3248805 /DB_XREF=UI-R-C0-je-a-10-0-UI.s1 /CLONE=UI-R-C0-je-a-10-0-UI /FEA=EST /CNT=7 /TID=Rn.36250.1 /TIER=ConsEnd /STK=3 /UG=Rn.36250 /UG_TITLE=ESTs, Weakly similar to PVR2_MOUSE POLIOVIRUS RECEPTOR RELATED PROTEIN 2 PRECURSOR (MURINE HERPESVIRUS ENTRY PROTEIN B) (MHVEB) (NECTIN 2) (POLIOVIRUS RECEPTOR HOMOLOG) (M.musculus) AI030979 Poliovirus receptor-related 3 Pvrl3 288124 NM_001105883 0002089 // lens morphogenesis in camera-type eye // not recorded /// 0007155 // cell adhesion // not recorded /// 0007156 // homophilic cell adhesion // not recorded /// 0009566 // fertilization // not recorded /// 0016337 // cell-cell adhesion // not recorded /// 0060042 // retina morphogenesis in camera-type eye // not recorded 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // not recorded /// 0005913 // cell-cell adherens junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043296 // apical junction complex // not recorded 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0050839 // cell adhesion molecule binding // not recorded 1377715_at BI303075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303075 /DB_XREF=gi:14979355 /DB_XREF=UI-R-DQ0-ciz-a-09-0-UI.s1 /CLONE=UI-R-DQ0-ciz-a-09-0-UI /FEA=EST /CNT=7 /TID=Rn.19529.1 /TIER=ConsEnd /STK=3 /UG=Rn.19529 /UG_TITLE=ESTs BI303075 1377716_at BE116101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116101 /DB_XREF=gi:8508206 /DB_XREF=UI-R-BS1-axz-d-11-0-UI.s1 /CLONE=UI-R-BS1-axz-d-11-0-UI /FEA=EST /CNT=7 /TID=Rn.23604.1 /TIER=ConsEnd /STK=3 /UG=Rn.23604 /UG_TITLE=ESTs BE116101 1377717_at AI501409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501409 /DB_XREF=gi:4399260 /DB_XREF=UI-R-C2p-sa-f-12-0-UI.s1 /CLONE=UI-R-C2p-sa-f-12-0-UI /FEA=EST /CNT=7 /TID=Rn.37336.1 /TIER=ConsEnd /STK=3 /UG=Rn.37336 /UG_TITLE=ESTs AI501409 0005488 // binding // inferred from electronic annotation 1377718_at BI302694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302694 /DB_XREF=gi:14978974 /DB_XREF=UI-R-DO0-cix-j-24-0-UI.s1 /CLONE=UI-R-DO0-cix-j-24-0-UI /FEA=EST /CNT=7 /TID=Rn.49267.1 /TIER=ConsEnd /STK=3 /UG=Rn.49267 /UG_TITLE=ESTs BI302694 Fanconi anemia, complementation group B Fancb 501552 NM_001192003 /// XM_001067159 /// XM_002727547 /// XM_002730225 /// XM_576954 1377719_a_at AA892765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892765 /DB_XREF=gi:3019644 /DB_XREF=EST196568 /CLONE=RKIAX04 /FEA=EST /CNT=7 /TID=Rn.3800.2 /TIER=ConsEnd /STK=3 /UG=Rn.3800 /UG_TITLE=ESTs AA892765 1377720_x_at AA892765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892765 /DB_XREF=gi:3019644 /DB_XREF=EST196568 /CLONE=RKIAX04 /FEA=EST /CNT=7 /TID=Rn.3800.2 /TIER=ConsEnd /STK=3 /UG=Rn.3800 /UG_TITLE=ESTs AA892765 1377721_at BE112451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112451 /DB_XREF=gi:8504556 /DB_XREF=UI-R-BJ1-avm-g-12-0-UI.s1 /CLONE=UI-R-BJ1-avm-g-12-0-UI /FEA=EST /CNT=7 /TID=Rn.14085.1 /TIER=ConsEnd /STK=3 /UG=Rn.14085 /UG_TITLE=ESTs BE112451 Park2 co-regulated Pacrg 499021 NM_001077677 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1377722_at BE100072 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100072 /DB_XREF=gi:8491958 /DB_XREF=UI-R-BJ1-atm-d-07-0-UI.s1 /CLONE=UI-R-BJ1-atm-d-07-0-UI /FEA=EST /CNT=7 /TID=Rn.40874.1 /TIER=ConsEnd /STK=3 /UG=Rn.40874 /UG_TITLE=ESTs, Moderately similar to S60561 I kappa B-like protein (H.sapiens) BE100072 ATPase, H+ transporting, lysosomal V1 subunit G2 Atp6v1g2 368044 NM_212490 0006200 // ATP catabolic process // not recorded /// 0015992 // proton transport // not recorded /// 0015992 // proton transport // traceable author statement /// 0015992 // proton transport // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded 0016471 // vacuolar proton-transporting V-type ATPase complex // not recorded /// 0016471 // vacuolar proton-transporting V-type ATPase complex // traceable author statement /// 0016471 // vacuolar proton-transporting V-type ATPase complex // inferred from electronic annotation /// 0030285 // integral to synaptic vesicle membrane // inferred from electronic annotation /// 0030285 // integral to synaptic vesicle membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008553 // hydrogen-exporting ATPase activity, phosphorylative mechanism // not recorded /// 0008553 // hydrogen-exporting ATPase activity, phosphorylative mechanism // traceable author statement /// 0008553 // hydrogen-exporting ATPase activity, phosphorylative mechanism // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0016887 // ATPase activity // traceable author statement /// 0016887 // ATPase activity // inferred from electronic annotation 1377723_at AI234810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234810 /DB_XREF=gi:4136034 /DB_XREF=EST231372 /CLONE=ROVCI03 /FEA=EST /CNT=7 /TID=Rn.19876.1 /TIER=ConsEnd /STK=3 /UG=Rn.19876 /UG_TITLE=ESTs AI234810 1377724_at AW523278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523278 /DB_XREF=gi:7165663 /DB_XREF=UI-R-BO0-aht-d-07-0-UI.s1 /CLONE=UI-R-BO0-aht-d-07-0-UI /FEA=EST /CNT=7 /TID=Rn.44710.1 /TIER=ConsEnd /STK=3 /UG=Rn.44710 /UG_TITLE=ESTs, Weakly similar to C41D11.3.p (Caenorhabditis elegans) (C.elegans) AW523278 cysteine-serine-rich nuclear protein 2 Csrnp2 315308 NM_001108113 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // not recorded 1377725_at AI575322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575322 /DB_XREF=gi:4559698 /DB_XREF=UI-R-Y0-vh-c-10-0-UI.s1 /CLONE=UI-R-Y0-vh-c-10-0-UI /FEA=EST /CNT=7 /TID=Rn.44895.1 /TIER=ConsEnd /STK=3 /UG=Rn.44895 /UG_TITLE=ESTs AI575322 1377726_at BI293740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293740 /DB_XREF=gi:14955523 /DB_XREF=UI-R-DK0-cdz-b-11-0-UI.s1 /CLONE=UI-R-DK0-cdz-b-11-0-UI /FEA=EST /CNT=7 /TID=Rn.34382.1 /TIER=ConsEnd /STK=3 /UG=Rn.34382 /UG_TITLE=ESTs, Highly similar to I49642 estrogen-responsive finger protein - mouse (M.musculus) BI293740 tripartite motif-containing 25 Trim25 494338 NM_001009536 0033280 // response to vitamin D // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030054 // cell junction // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377727_at BE109134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109134 /DB_XREF=gi:8501239 /DB_XREF=UI-R-BS1-azb-d-01-0-UI.s1 /CLONE=UI-R-BS1-azb-d-01-0-UI /FEA=EST /CNT=7 /TID=Rn.31119.1 /TIER=ConsEnd /STK=3 /UG=Rn.31119 /UG_TITLE=ESTs, Weakly similar to T45039 hypothetical protein Y39B6B.m (imported) - Caenorhabditis elegans (C.elegans) BE109134 bromodomain adjacent to zinc finger domain, 1A Baz1a 314126 NM_001170568 /// XM_001079067 /// XM_234156 0000228 // nuclear chromosome // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1377728_at BI280802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280802 /DB_XREF=gi:14929928 /DB_XREF=UI-R-CS0s-cbg-b-03-0-UI.s1 /CLONE=UI-R-CS0s-cbg-b-03-0-UI /FEA=EST /CNT=7 /TID=Rn.29800.1 /TIER=ConsEnd /STK=3 /UG=Rn.29800 /UG_TITLE=ESTs BI280802 RGD1565641 RGD1565641 499567 NM_001109179 1377729_at BG668988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668988 /DB_XREF=gi:13890910 /DB_XREF=DRN04A11 /CLONE=DRN04A11 /FEA=EST /CNT=11 /TID=Rn.7567.1 /TIER=ConsEnd /STK=3 /UG=Rn.7567 /UG_TITLE=ESTs BG668988 Elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4 Elovl4 315851 NM_001191796 /// XM_001062735 /// XM_236476 0016021 // integral to membrane // inferred from electronic annotation 1377730_at BF290890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290890 /DB_XREF=gi:11221960 /DB_XREF=EST455481 /CLONE=RGIIF82 /FEA=EST /CNT=11 /TID=Rn.23702.1 /TIER=ConsEnd /STK=3 /UG=Rn.23702 /UG_TITLE=ESTs, Highly similar to C141_HUMAN PROTEIN C14ORF1 (HSPC288) (H.sapiens) BF290890 similar to HSPC288 RGD1310769 299207 NM_001106749 0016021 // integral to membrane // inferred from electronic annotation /// 0030133 // transport vesicle // not recorded 1377731_at AI454091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454091 /DB_XREF=gi:4291300 /DB_XREF=UI-R-A0-ah-f-02-0-UI.s1 /CLONE=UI-R-A0-ah-f-02-0-UI /FEA=EST /CNT=10 /TID=Rn.14725.1 /TIER=ConsEnd /STK=3 /UG=Rn.14725 /UG_TITLE=ESTs AI454091 nuclear DNA binding protein C1d 289810 NM_001106021 0016481 // negative regulation of transcription // inferred from electronic annotation 0017053 // transcriptional repressor complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016922 // ligand-dependent nuclear receptor binding // inferred from electronic annotation 1377732_at AA956543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956543 /DB_XREF=gi:4239017 /DB_XREF=UI-R-E1-fn-f-07-0-UI.s1 /CLONE=UI-R-E1-fn-f-07-0-UI /FEA=EST /CNT=9 /TID=Rn.57782.1 /TIER=ConsEnd /STK=3 /UG=Rn.57782 /UG_TITLE=ESTs AA956543 BTB (POZ) domain containing 16 Btbd16 361658 NM_001017464 0005515 // protein binding // inferred from electronic annotation 1377733_at AA944531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944531 /DB_XREF=gi:3104447 /DB_XREF=EST200030 /CLONE=REMAK65 /FEA=EST /CNT=9 /TID=Rn.7750.2 /TIER=ConsEnd /STK=3 /UG=Rn.7750 /UG_TITLE=ESTs AA944531 1377734_at AI317811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI317811 /DB_XREF=gi:4033078 /DB_XREF=EST234482 /CLONE=RPPAA15 /FEA=EST /CNT=8 /TID=Rn.21459.1 /TIER=ConsEnd /STK=3 /UG=Rn.21459 /UG_TITLE=ESTs AI317811 1377735_at AI176309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176309 /DB_XREF=gi:3726947 /DB_XREF=EST219891 /CLONE=ROVBP84 /FEA=EST /CNT=8 /TID=Rn.33567.2 /TIER=ConsEnd /STK=3 /UG=Rn.33567 /UG_TITLE=ESTs AI176309 pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3 Plekha3 295674 NM_001013077 0005543 // phospholipid binding // not recorded /// 0005545 // phosphatidylinositol binding // inferred from electronic annotation /// 0005545 // phosphatidylinositol binding // not recorded 1377736_at BF284308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284308 /DB_XREF=gi:11215378 /DB_XREF=EST448899 /CLONE=RGIEO19 /FEA=EST /CNT=8 /TID=Rn.8982.1 /TIER=ConsEnd /STK=3 /UG=Rn.8982 /UG_TITLE=ESTs BF284308 1377737_at BE098874 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098874 /DB_XREF=gi:8490745 /DB_XREF=UI-R-BJ1-ate-g-12-0-UI.s1 /CLONE=UI-R-BJ1-ate-g-12-0-UI /FEA=EST /CNT=8 /TID=Rn.2757.1 /TIER=ConsEnd /STK=3 /UG=Rn.2757 /UG_TITLE=ESTs BE098874 non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human) Nipa2 308667 NM_001107518 0015693 // magnesium ion transport // not recorded 0005769 // early endosome // not recorded /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // not recorded 1377738_a_at AI176855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176855 /DB_XREF=gi:3727493 /DB_XREF=EST220458 /CLONE=ROVBX73 /FEA=EST /CNT=1 /TID=Rn.31344.2 /TIER=ConsEnd /STK=1 /UG=Rn.31344 /UG_TITLE=ESTs AI176855 cysteine and histidine rich 1 Cyhr1 315097 NM_001025122 0016567 // protein ubiquitination // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377739_at AI576549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576549 /DB_XREF=gi:4560925 /DB_XREF=UI-R-G0-uq-f-03-0-UI.s1 /CLONE=UI-R-G0-uq-f-03-0-UI /FEA=EST /CNT=8 /TID=Rn.33407.1 /TIER=ConsEnd /STK=3 /UG=Rn.33407 /UG_TITLE=ESTs, Moderately similar to GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)G(S)G(O) GAMMA-7 SUBUNIT (R.norvegicus) AI576549 guanine nucleotide binding protein (G protein), gamma 12 Gng12 114120 XM_001067408 /// XM_578287 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0021987 // cerebral cortex development // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0005884 // actin filament // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0042301 // phosphate binding // inferred from direct assay 1377740_at BF284600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284600 /DB_XREF=gi:11215670 /DB_XREF=EST449191 /CLONE=RGIES70 /FEA=EST /CNT=7 /TID=Rn.17224.1 /TIER=ConsEnd /STK=3 /UG=Rn.17224 /UG_TITLE=ESTs BF284600 1377741_at BF389042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389042 /DB_XREF=gi:11373869 /DB_XREF=UI-R-BS2-bdh-b-08-0-UI.s1 /CLONE=UI-R-BS2-bdh-b-08-0-UI /FEA=EST /CNT=7 /TID=Rn.12855.1 /TIER=ConsEnd /STK=3 /UG=Rn.12855 /UG_TITLE=ESTs BF389042 1377742_at AI170706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170706 /DB_XREF=gi:3710746 /DB_XREF=EST216642 /CLONE=RMUBA24 /FEA=EST /CNT=7 /TID=Rn.28440.1 /TIER=ConsEnd /STK=3 /UG=Rn.28440 /UG_TITLE=ESTs AI170706 1377743_at BI292687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292687 /DB_XREF=gi:14953431 /DB_XREF=UI-R-DO0-ciw-p-11-0-UI.s1 /CLONE=UI-R-DO0-ciw-p-11-0-UI /FEA=EST /CNT=7 /TID=Rn.20909.1 /TIER=ConsEnd /STK=3 /UG=Rn.20909 /UG_TITLE=ESTs BI292687 1377744_at BF392982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392982 /DB_XREF=gi:11377842 /DB_XREF=UI-R-CA0-bfr-e-03-0-UI.s1 /CLONE=UI-R-CA0-bfr-e-03-0-UI /FEA=EST /CNT=7 /TID=Rn.37275.1 /TIER=ConsEnd /STK=3 /UG=Rn.37275 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) BF392982 1377745_at BE349673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE349673 /DB_XREF=gi:9261526 /DB_XREF=hq41e01.x1 /CLONE=IMAGE:3121944 /FEA=EST /CNT=7 /TID=Rn.13631.1 /TIER=ConsEnd /STK=3 /UG=Rn.13631 /UG_TITLE=ESTs, Highly similar to T47176 hypothetical protein DKFZp762P236.1 (H.sapiens) BE349673 leucine rich repeat containing 40 Lrrc40 310946 NM_001034926 0005515 // protein binding // inferred from electronic annotation 1377746_at AI010418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010418 /DB_XREF=gi:3224250 /DB_XREF=EST204869 /CLONE=RLUBZ23 /FEA=EST /CNT=7 /TID=Rn.7119.1 /TIER=ConsEnd /STK=3 /UG=Rn.7119 /UG_TITLE=ESTs AI010418 RNA binding motif protein 12 Rbm12 652928 NM_001037657 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1377747_at BE116029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116029 /DB_XREF=gi:8508134 /DB_XREF=UI-R-BS1-axy-f-09-0-UI.s1 /CLONE=UI-R-BS1-axy-f-09-0-UI /FEA=EST /CNT=7 /TID=Rn.3267.1 /TIER=ConsEnd /STK=3 /UG=Rn.3267 /UG_TITLE=ESTs BE116029 1377748_at BF410460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410460 /DB_XREF=gi:11398435 /DB_XREF=UI-R-CA1-bjx-g-04-0-UI.s1 /CLONE=UI-R-CA1-bjx-g-04-0-UI /FEA=EST /CNT=6 /TID=Rn.24006.1 /TIER=ConsEnd /STK=3 /UG=Rn.24006 /UG_TITLE=ESTs BF410460 similar to zinc finger protein 422, related sequence 1 LOC314600 314600 NM_001126281 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377749_at BE112621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112621 /DB_XREF=gi:8504726 /DB_XREF=UI-R-BJ1-avn-g-05-0-UI.s1 /CLONE=UI-R-BJ1-avn-g-05-0-UI /FEA=EST /CNT=6 /TID=Rn.20181.1 /TIER=ConsEnd /STK=3 /UG=Rn.20181 /UG_TITLE=ESTs BE112621 1377750_at AI454536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454536 /DB_XREF=gi:4294413 /DB_XREF=UI-R-BT0-pw-b-09-0-UI.s1 /CLONE=UI-R-BT0-pw-b-09-0-UI /FEA=EST /CNT=6 /TID=Rn.11687.1 /TIER=ConsEnd /STK=3 /UG=Rn.11687 /UG_TITLE=ESTs AI454536 Rho guanine nucleotide exchange factor (GEF) 3 Arhgef3 290541 NM_001106061 0006915 // apoptosis // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005829 // cytosol // not recorded 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1377751_at AI233227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233227 /DB_XREF=gi:3817107 /DB_XREF=EST229915 /CLONE=RKIDC44 /FEA=EST /CNT=6 /TID=Rn.24708.1 /TIER=ConsEnd /STK=3 /UG=Rn.24708 /UG_TITLE=ESTs AI233227 1377752_at BE112998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112998 /DB_XREF=gi:8505103 /DB_XREF=UI-R-BJ1-awf-c-03-0-UI.s1 /CLONE=UI-R-BJ1-awf-c-03-0-UI /FEA=EST /CNT=6 /TID=Rn.21730.1 /TIER=ConsEnd /STK=3 /UG=Rn.21730 /UG_TITLE=ESTs, Weakly similar to PERIPHERAL MYELIN PROTEIN 22 (R.norvegicus) BE112998 epithelial membrane protein 2 Emp2 360468 NM_001007721 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1377753_at BI295763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295763 /DB_XREF=gi:14959536 /DB_XREF=UI-R-DK0-cfa-d-01-0-UI.s1 /CLONE=UI-R-DK0-cfa-d-01-0-UI /FEA=EST /CNT=6 /TID=Rn.14853.1 /TIER=ConsEnd /STK=3 /UG=Rn.14853 /UG_TITLE=ESTs BI295763 1377754_at BF284038 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284038 /DB_XREF=gi:11215108 /DB_XREF=EST448629 /CLONE=RGIEK23 /FEA=EST /CNT=6 /TID=Rn.15903.1 /TIER=ConsEnd /STK=3 /UG=Rn.15903 /UG_TITLE=ESTs BF284038 1377755_at AI179403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179403 /DB_XREF=gi:3730041 /DB_XREF=EST223106 /CLONE=RSPCG77 /FEA=EST /CNT=6 /TID=Rn.24209.1 /TIER=ConsEnd /STK=3 /UG=Rn.24209 /UG_TITLE=ESTs, Weakly similar to U520_HUMAN U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 200 KDA HELICASE (U5 SNRNP-SPECIFIC 200 KDA PROTEIN) (U5-200KD) (H.sapiens) AI179403 activating signal cointegrator 1 complex subunit 3 Ascc3 309887 NM_001107640 0005622 // intracellular // not recorded /// 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1377756_at AI232228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232228 /DB_XREF=gi:3816108 /DB_XREF=EST228916 /CLONE=RKIBY66 /FEA=EST /CNT=6 /TID=Rn.9254.1 /TIER=ConsEnd /STK=3 /UG=Rn.9254 /UG_TITLE=ESTs AI232228 ISY1 splicing factor homolog (S. cerevisiae) Isy1 362394 NM_001014188 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1377757_at AA858978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858978 /DB_XREF=gi:4229250 /DB_XREF=UI-R-A0-bi-a-06-0-UI.s1 /CLONE=UI-R-A0-bi-a-06-0-UI /FEA=EST /CNT=6 /TID=Rn.2515.1 /TIER=ConsEnd /STK=3 /UG=Rn.2515 /UG_TITLE=ESTs AA858978 SNF2 histone linker PHD RING helicase Shprh 308282 NM_001107470 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377758_at BF415386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415386 /DB_XREF=gi:11403375 /DB_XREF=UI-R-BJ2-box-c-11-0-UI.s1 /CLONE=UI-R-BJ2-box-c-11-0-UI /FEA=EST /CNT=6 /TID=Rn.25104.1 /TIER=ConsEnd /STK=3 /UG=Rn.25104 /UG_TITLE=ESTs BF415386 hydroxysteroid (17-beta) dehydrogenase 13 Hsd17b13 305150 NM_001009684 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1377759_at BG666928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666928 /DB_XREF=gi:13888850 /DB_XREF=DRACQH11 /CLONE=DRACQH11 /FEA=EST /CNT=6 /TID=Rn.31142.1 /TIER=ConsEnd /STK=3 /UG=Rn.31142 /UG_TITLE=ESTs, Weakly similar to S12207 hypothetical protein (M.musculus) BG666928 BH3 interacting domain death agonist Bid 64625 NM_022684 0001836 // release of cytochrome c from mitochondria // inferred from direct assay /// 0001836 // release of cytochrome c from mitochondria // not recorded /// 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0006626 // protein targeting to mitochondrion // inferred from electronic annotation /// 0006626 // protein targeting to mitochondrion // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0034349 // glial cell apoptosis // inferred from expression pattern /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0046902 // regulation of mitochondrial membrane permeability // inferred from electronic annotation /// 0046902 // regulation of mitochondrial membrane permeability // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded 1377760_at AA956374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956374 /DB_XREF=gi:4238848 /DB_XREF=UI-R-E1-fg-c-11-0-UI.s2 /CLONE=UI-R-E1-fg-c-11-0-UI /FEA=EST /CNT=6 /TID=Rn.8908.1 /TIER=ConsEnd /STK=3 /UG=Rn.8908 /UG_TITLE=ESTs, Weakly similar to T16903 hypothetical protein T20B12.3 - Caenorhabditis elegans (C.elegans) AA956374 nucleolar complex associated 4 homolog (S. cerevisiae) Noc4l 360828 NM_001014129 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1377761_at BI296057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296057 /DB_XREF=gi:14960119 /DB_XREF=UI-R-DK0-cfd-h-02-0-UI.s1 /CLONE=UI-R-DK0-cfd-h-02-0-UI /FEA=EST /CNT=6 /TID=Rn.16089.1 /TIER=ConsEnd /STK=3 /UG=Rn.16089 /UG_TITLE=ESTs BI296057 glutamine-fructose-6-phosphate transaminase 2 Gfpt2 360518 NM_001002819 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016051 // carbohydrate biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004360 // glutamine-fructose-6-phosphate transaminase (isomerizing) activity // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1377762_at BG381701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381701 /DB_XREF=gi:13306173 /DB_XREF=UI-R-CT0-bue-d-08-0-UI.s1 /CLONE=UI-R-CT0-bue-d-08-0-UI /FEA=EST /CNT=6 /TID=Rn.7020.1 /TIER=ConsEnd /STK=3 /UG=Rn.7020 /UG_TITLE=ESTs BG381701 1377763_at BF283765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283765 /DB_XREF=gi:11214835 /DB_XREF=EST448356 /CLONE=RGIEG57 /FEA=EST /CNT=6 /TID=Rn.8000.1 /TIER=ConsEnd /STK=3 /UG=Rn.8000 /UG_TITLE=ESTs BF283765 1377764_at BF411531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411531 /DB_XREF=gi:11399520 /DB_XREF=UI-R-BT1-bmt-a-05-0-UI.s1 /CLONE=UI-R-BT1-bmt-a-05-0-UI /FEA=EST /CNT=6 /TID=Rn.46339.1 /TIER=ConsEnd /STK=3 /UG=Rn.46339 /UG_TITLE=ESTs, Moderately similar to A32469 80K protein H precursor (H.sapiens) BF411531 1377765_at AA848723 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848723 /DB_XREF=gi:4131668 /DB_XREF=EST191483 /CLONE=RLUAE61 /FEA=EST /CNT=6 /TID=Rn.22810.1 /TIER=ConsEnd /STK=3 /UG=Rn.22810 /UG_TITLE=ESTs AA848723 chloride intracellular channel 4 Clic4 83718 NM_031818 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // traceable author statement /// 0006821 // chloride transport // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // not recorded /// 0030336 // negative regulation of cell migration // not recorded /// 0030336 // negative regulation of cell migration // inferred from sequence or structural similarity /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0071277 // cellular response to calcium ion // inferred from electronic annotation /// 0071277 // cellular response to calcium ion // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005625 // soluble fraction // not recorded /// 0005625 // soluble fraction // inferred from sequence or structural similarity /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005902 // microvillus // not recorded /// 0005902 // microvillus // inferred from sequence or structural similarity /// 0005902 // microvillus // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0009986 // cell surface // not recorded /// 0015630 // microtubule cytoskeleton // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded /// 0030496 // midbody // not recorded /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031982 // vesicle // traceable author statement /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005247 // voltage-gated chloride channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from direct assay /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1377766_at BI285939 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285939 /DB_XREF=gi:14940091 /DB_XREF=UI-R-CX0s-ccp-e-11-0-UI.s1 /CLONE=UI-R-CX0s-ccp-e-11-0-UI /FEA=EST /CNT=6 /TID=Rn.22854.1 /TIER=ConsEnd /STK=3 /UG=Rn.22854 /UG_TITLE=ESTs BI285939 similar to erythroid differentiation-related factor 1 RGD1306820 309069 NM_001107557 1377767_at AW526033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526033 /DB_XREF=gi:7168418 /DB_XREF=UI-R-BO1-aiy-e-04-0-UI.s1 /CLONE=UI-R-BO1-aiy-e-04-0-UI /FEA=EST /CNT=6 /TID=Rn.43469.1 /TIER=ConsEnd /STK=3 /UG=Rn.43469 /UG_TITLE=ESTs AW526033 1377768_at BE107485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107485 /DB_XREF=gi:8499590 /DB_XREF=UI-R-BS1-ayu-c-04-0-UI.s1 /CLONE=UI-R-BS1-ayu-c-04-0-UI /FEA=EST /CNT=6 /TID=Rn.27416.1 /TIER=ConsEnd /STK=3 /UG=Rn.27416 /UG_TITLE=ESTs BE107485 potassium channel tetramerisation domain containing 1 Kctd1 291772 XM_001062225 /// XM_214617 0006350 // transcription // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1377769_at AA955775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955775 /DB_XREF=gi:4238170 /DB_XREF=UI-R-E1-fg-a-05-0-UI.s1 /CLONE=UI-R-E1-fg-a-05-0-UI /FEA=EST /CNT=6 /TID=Rn.8927.1 /TIER=ConsEnd /STK=3 /UG=Rn.8927 /UG_TITLE=ESTs, Weakly similar to AP17 MOUSE CLATHRIN COAT ASSEMBLY PROTEIN AP17 (R.norvegicus) AA955775 adaptor-related protein complex 1, sigma 1 subunit Ap1s1 360785 NM_001108331 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0009615 // response to virus // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005829 // cytosol // not recorded /// 0030117 // membrane coat // inferred from electronic annotation /// 0030130 // clathrin coat of trans-Golgi network vesicle // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation 1377770_at AI168965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI168965 /DB_XREF=gi:3705273 /DB_XREF=EST214793 /CLONE=RKIBL26 /FEA=EST /CNT=6 /TID=Rn.12792.1 /TIER=ConsEnd /STK=3 /UG=Rn.12792 /UG_TITLE=ESTs AI168965 1377771_at BF400696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400696 /DB_XREF=gi:11388671 /DB_XREF=UI-R-CA0-bhe-d-08-0-UI.s1 /CLONE=UI-R-CA0-bhe-d-08-0-UI /FEA=EST /CNT=6 /TID=Rn.23962.1 /TIER=ConsEnd /STK=3 /UG=Rn.23962 /UG_TITLE=ESTs BF400696 1377772_at BI295864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295864 /DB_XREF=gi:14959737 /DB_XREF=UI-R-DK0-cfb-e-12-0-UI.s1 /CLONE=UI-R-DK0-cfb-e-12-0-UI /FEA=EST /CNT=6 /TID=Rn.43072.1 /TIER=ConsEnd /STK=3 /UG=Rn.43072 /UG_TITLE=ESTs BI295864 transmembrane protein with EGF-like and two follistatin-like domains 1 Tmeff1 63845 NM_023020 0007275 // multicellular organismal development // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1377773_at AW522872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522872 /DB_XREF=gi:7165257 /DB_XREF=UI-R-BO0-ahn-g-01-0-UI.s1 /CLONE=UI-R-BO0-ahn-g-01-0-UI /FEA=EST /CNT=6 /TID=Rn.24387.1 /TIER=ConsEnd /STK=3 /UG=Rn.24387 /UG_TITLE=ESTs AW522872 1377774_at AI029275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029275 /DB_XREF=gi:4297440 /DB_XREF=UI-R-C0-iq-b-05-0-UI.s1 /CLONE=UI-R-C0-iq-b-05-0-UI /FEA=EST /CNT=6 /TID=Rn.37860.1 /TIER=ConsEnd /STK=3 /UG=Rn.37860 /UG_TITLE=ESTs AI029275 1377775_at AI234627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234627 /DB_XREF=gi:4136011 /DB_XREF=EST231189 /CLONE=RLUDC55 /FEA=EST /CNT=6 /TID=Rn.31654.1 /TIER=ConsEnd /STK=3 /UG=Rn.31654 /UG_TITLE=ESTs AI234627 1377776_at AI070369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070369 /DB_XREF=gi:3396620 /DB_XREF=UI-R-Y0-lt-b-08-0-UI.s1 /CLONE=UI-R-Y0-lt-b-08-0-UI /FEA=EST /CNT=6 /TID=Rn.21293.1 /TIER=ConsEnd /STK=3 /UG=Rn.21293 /UG_TITLE=ESTs AI070369 WD repeat, sterile alpha motif and U-box domain containing 1 Wdsub1 362137 NM_001014179 0016567 // protein ubiquitination // inferred from electronic annotation 0000151 // ubiquitin ligase complex // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation 1377777_at BM391018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391018 /DB_XREF=gi:18191071 /DB_XREF=UI-R-CN1-cjm-m-23-0-UI.s1 /CLONE=UI-R-CN1-cjm-m-23-0-UI /FEA=EST /CNT=6 /TID=Rn.23466.1 /TIER=ConsEnd /STK=3 /UG=Rn.23466 /UG_TITLE=ESTs BM391018 bromodomain containing 9 Brd9 308067 NM_001107453 1377778_at BE107282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107282 /DB_XREF=gi:8499387 /DB_XREF=UI-R-BS1-ays-a-03-0-UI.s1 /CLONE=UI-R-BS1-ays-a-03-0-UI /FEA=EST /CNT=6 /TID=Rn.38750.1 /TIER=ConsEnd /STK=3 /UG=Rn.38750 /UG_TITLE=ESTs BE107282 ischemia related factor vof-16 Vof16 259227 NM_147207 1377779_at AI137175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137175 /DB_XREF=gi:3637952 /DB_XREF=UI-R-C2p-oh-e-11-0-UI.s1 /CLONE=UI-R-C2p-oh-e-11-0-UI /FEA=EST /CNT=6 /TID=Rn.22889.1 /TIER=ConsEnd /STK=3 /UG=Rn.22889 /UG_TITLE=ESTs AI137175 phosducin-like 3 Pdcl3 316348 NM_001025709 0006915 // apoptosis // inferred from electronic annotation /// 0044419 // interspecies interaction between organisms // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1377780_at AI179881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179881 /DB_XREF=gi:3730519 /DB_XREF=EST223612 /CLONE=RSPCN25 /FEA=EST /CNT=6 /TID=Rn.40920.1 /TIER=ConsEnd /STK=3 /UG=Rn.40920 /UG_TITLE=ESTs AI179881 tetraspanin 9 Tspan9 312728 NM_001107890 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1377781_at AA899278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899278 /DB_XREF=gi:4231777 /DB_XREF=UI-R-E0-bp-b-04-0-UI.s2 /CLONE=UI-R-E0-bp-b-04-0-UI /FEA=EST /CNT=6 /TID=Rn.22265.1 /TIER=ConsEnd /STK=3 /UG=Rn.22265 /UG_TITLE=ESTs AA899278 1377782_at BF402614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402614 /DB_XREF=gi:11390589 /DB_XREF=UI-R-CA0-bhm-e-09-0-UI.s1 /CLONE=UI-R-CA0-bhm-e-09-0-UI /FEA=EST /CNT=6 /TID=Rn.17467.1 /TIER=ConsEnd /STK=3 /UG=Rn.17467 /UG_TITLE=ESTs BF402614 1377783_at BI294141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294141 /DB_XREF=gi:14956315 /DB_XREF=UI-R-DK0-cej-h-05-0-UI.s1 /CLONE=UI-R-DK0-cej-h-05-0-UI /FEA=EST /CNT=6 /TID=Rn.9586.1 /TIER=ConsEnd /STK=3 /UG=Rn.9586 /UG_TITLE=ESTs, Weakly similar to FIBA RAT FIBRINOGEN ALPHAALPHA-E CHAIN PRECURSOR (R.norvegicus) BI294141 angiopoietin 4 Angpt4 296269 NM_001106526 0001935 // endothelial cell proliferation // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0010595 // positive regulation of endothelial cell migration // not recorded /// 0016525 // negative regulation of angiogenesis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043536 // positive regulation of blood vessel endothelial cell migration // not recorded /// 0043537 // negative regulation of blood vessel endothelial cell migration // not recorded /// 0045766 // positive regulation of angiogenesis // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0071456 // cellular response to hypoxia // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005102 // receptor binding // inferred from electronic annotation /// 0030297 // transmembrane receptor protein tyrosine kinase activator activity // not recorded /// 0030971 // receptor tyrosine kinase binding // not recorded 1377784_at AW915304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915304 /DB_XREF=gi:8080995 /DB_XREF=EST346608 /CLONE=RGICS82 /FEA=EST /CNT=6 /TID=Rn.11532.1 /TIER=ConsEnd /STK=3 /UG=Rn.11532 /UG_TITLE=ESTs AW915304 1377785_at BI275330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275330 /DB_XREF=gi:14887068 /DB_XREF=UI-R-CX0-bwu-b-10-0-UI.s1 /CLONE=UI-R-CX0-bwu-b-10-0-UI /FEA=EST /CNT=6 /TID=Rn.46592.1 /TIER=ConsEnd /STK=3 /UG=Rn.46592 /UG_TITLE=ESTs, Weakly similar to DD15 MOUSE PUTATIVE PRE-MRNA SPLICING FACTOR RNA HELICASE (M.musculus) BI275330 DEAH (Asp-Glu-Ala-His) box polypeptide 40 Dhx40 287595 NM_001005873 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1377786_at BE117884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117884 /DB_XREF=gi:8509989 /DB_XREF=UI-R-BS1-azm-b-05-0-UI.s1 /CLONE=UI-R-BS1-azm-b-05-0-UI /FEA=EST /CNT=6 /TID=Rn.24296.1 /TIER=ConsEnd /STK=3 /UG=Rn.24296 /UG_TITLE=ESTs BE117884 1377787_at BF407266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407266 /DB_XREF=gi:11395241 /DB_XREF=UI-R-BJ2-bqc-f-06-0-UI.s1 /CLONE=UI-R-BJ2-bqc-f-06-0-UI /FEA=EST /CNT=6 /TID=Rn.4198.1 /TIER=ConsEnd /STK=3 /UG=Rn.4198 /UG_TITLE=ESTs, Weakly similar to RBMA_RAT RNA-BINDING PROTEIN 10 (RNA BINDING MOTIF PROTEIN 10) (S1-1 PROTEIN) (R.norvegicus) BF407266 RNA binding motif protein 6 Rbm6 315997 NM_001108186 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1377788_at AI600015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600015 /DB_XREF=gi:4609063 /DB_XREF=EST251718 /CLONE=REMEK90 /FEA=EST /CNT=6 /TID=Rn.53897.1 /TIER=ConsEnd /STK=3 /UG=Rn.53897 /UG_TITLE=ESTs AI600015 1377789_at AI145035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145035 /DB_XREF=gi:3666834 /DB_XREF=UI-R-BT0-pr-g-12-0-UI.s1 /CLONE=UI-R-BT0-pr-g-12-0-UI /FEA=EST /CNT=6 /TID=Rn.13199.1 /TIER=ConsEnd /STK=3 /UG=Rn.13199 /UG_TITLE=ESTs AI145035 1377790_at BE115859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115859 /DB_XREF=gi:8508004 /DB_XREF=UI-R-BS1-axx-b-10-0-UI.s1 /CLONE=UI-R-BS1-axx-b-10-0-UI /FEA=EST /CNT=6 /TID=Rn.49288.1 /TIER=ConsEnd /STK=3 /UG=Rn.49288 /UG_TITLE=ESTs BE115859 RAB11 family interacting protein 1 (class I) Rab11fip1 498650 NM_001191555 /// NM_001197241 /// XM_001070627 /// XM_002728427 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from electronic annotation 0005515 // protein binding // not recorded 1377791_at BI299500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299500 /DB_XREF=gi:14975780 /DB_XREF=UI-R-CV2-cia-h-10-0-UI.s1 /CLONE=UI-R-CV2-cia-h-10-0-UI /FEA=EST /CNT=6 /TID=Rn.57709.1 /TIER=ConsEnd /STK=3 /UG=Rn.57709 /UG_TITLE=ESTs BI299500 1377792_at AW524891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524891 /DB_XREF=gi:7167276 /DB_XREF=UI-R-BO0-aid-e-04-0-UI.s1 /CLONE=UI-R-BO0-aid-e-04-0-UI /FEA=EST /CNT=6 /TID=Rn.49639.1 /TIER=ConsEnd /STK=3 /UG=Rn.49639 /UG_TITLE=ESTs AW524891 1377793_at BF407551 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407551 /DB_XREF=gi:11395526 /DB_XREF=UI-R-BJ2-bqt-f-02-0-UI.s1 /CLONE=UI-R-BJ2-bqt-f-02-0-UI /FEA=EST /CNT=6 /TID=Rn.22781.1 /TIER=ConsEnd /STK=3 /UG=Rn.22781 /UG_TITLE=ESTs BF407551 1377794_at BF288862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288862 /DB_XREF=gi:11219932 /DB_XREF=EST453453 /CLONE=RGIGY77 /FEA=EST /CNT=6 /TID=Rn.15147.1 /TIER=ConsEnd /STK=3 /UG=Rn.15147 /UG_TITLE=ESTs BF288862 1377795_at AI578745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578745 /DB_XREF=gi:4563121 /DB_XREF=UI-R-AA0-wq-f-11-0-UI.s1 /CLONE=UI-R-AA0-wq-f-11-0-UI /FEA=EST /CNT=6 /TID=Rn.25383.1 /TIER=ConsEnd /STK=3 /UG=Rn.25383 /UG_TITLE=ESTs AI578745 1377796_at AI234226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234226 /DB_XREF=gi:3818106 /DB_XREF=EST230914 /CLONE=RLUCY10 /FEA=EST /CNT=6 /TID=Rn.24792.1 /TIER=ConsEnd /STK=3 /UG=Rn.24792 /UG_TITLE=ESTs AI234226 Frizzled homolog 5 (Drosophila) Fzd5 317674 NM_173838 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0033077 // T cell differentiation in thymus // not recorded /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060716 // labyrinthine layer blood vessel development // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017147 // Wnt-protein binding // inferred from physical interaction /// 0017147 // Wnt-protein binding // not recorded /// 0017147 // Wnt-protein binding // inferred from electronic annotation 1377797_at AI071470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071470 /DB_XREF=gi:3397685 /DB_XREF=UI-R-C1-ku-g-04-0-UI.s2 /CLONE=UI-R-C1-ku-g-04-0-UI /FEA=EST /CNT=6 /TID=Rn.19543.1 /TIER=ConsEnd /STK=3 /UG=Rn.19543 /UG_TITLE=ESTs, Weakly similar to T26736 hypothetical protein Y39A1A.14 - Caenorhabditis elegans (C.elegans) AI071470 EMG1 nucleolar protein homolog (S. cerevisiae) Emg1 312706 NM_001107888 1377798_at AW915594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915594 /DB_XREF=gi:8081295 /DB_XREF=EST346898 /CLONE=RGICY16 /FEA=EST /CNT=6 /TID=Rn.19337.1 /TIER=ConsEnd /STK=3 /UG=Rn.19337 /UG_TITLE=ESTs, Weakly similar to A45973 trichohyalin (H.sapiens) AW915594 trichoplein, keratin filament binding Tchp 304547 NM_001191666 /// XM_002724825 /// XM_002727974 /// XM_222232 0045095 // keratin filament // not recorded /// 0045179 // apical cortex // not recorded 0005515 // protein binding // not recorded 1377799_at BE114159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114159 /DB_XREF=gi:8506264 /DB_XREF=UI-R-BJ1-awj-g-06-0-UI.s1 /CLONE=UI-R-BJ1-awj-g-06-0-UI /FEA=EST /CNT=6 /TID=Rn.41260.1 /TIER=ConsEnd /STK=3 /UG=Rn.41260 /UG_TITLE=ESTs BE114159 1377800_at BF400895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400895 /DB_XREF=gi:11388870 /DB_XREF=UI-R-CA0-bgg-b-09-0-UI.s1 /CLONE=UI-R-CA0-bgg-b-09-0-UI /FEA=EST /CNT=6 /TID=Rn.53720.1 /TIER=ConsEnd /STK=3 /UG=Rn.53720 /UG_TITLE=ESTs BF400895 1377801_at AI237031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237031 /DB_XREF=gi:3830537 /DB_XREF=EST233593 /CLONE=ROVDN80 /FEA=EST /CNT=6 /TID=Rn.25408.1 /TIER=ConsEnd /STK=3 /UG=Rn.25408 /UG_TITLE=ESTs AI237031 BTB (POZ) domain containing 12 Btbd12 302953 XM_001079342 /// XM_220211 0000724 // double-strand break repair via homologous recombination // not recorded /// 0006281 // DNA repair // not recorded /// 0006289 // nucleotide-excision repair // not recorded /// 0010792 // DNA double-strand break processing involved in repair via single-strand annealing // not recorded 0000784 // nuclear chromosome, telomeric region // not recorded /// 0000790 // nuclear chromatin // not recorded /// 0033557 // Slx1-Slx4 complex // not recorded /// 0048476 // Holliday junction resolvase complex // not recorded /// 0070522 // ERCC4-ERCC1 complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008047 // enzyme activator activity // not recorded /// 0008821 // crossover junction endodeoxyribonuclease activity // not recorded /// 0017108 // 5'-flap endonuclease activity // not recorded /// 0048257 // 3'-flap endonuclease activity // not recorded 1377802_at BE098769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098769 /DB_XREF=gi:8490638 /DB_XREF=UI-R-BJ1-atd-f-09-0-UI.s1 /CLONE=UI-R-BJ1-atd-f-09-0-UI /FEA=EST /CNT=6 /TID=Rn.22949.3 /TIER=ConsEnd /STK=3 /UG=Rn.22949 /UG_TITLE=ESTs, Highly similar to KIAA0383 (H.sapiens) BE098769 1377803_at BF555990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555990 /DB_XREF=gi:11665720 /DB_XREF=UI-R-A1-dy-d-12-0-UI.r1 /CLONE=UI-R-A1-dy-d-12-0-UI /FEA=EST /CNT=6 /TID=Rn.15323.1 /TIER=ConsEnd /STK=3 /UG=Rn.15323 /UG_TITLE=ESTs BF555990 coiled-coil domain containing 153 Ccdc153 300663 NM_001013953 1377804_at AI030809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030809 /DB_XREF=gi:3248635 /DB_XREF=UI-R-C0-je-b-03-0-UI.s1 /CLONE=UI-R-C0-je-b-03-0-UI /FEA=EST /CNT=6 /TID=Rn.12313.1 /TIER=ConsEnd /STK=3 /UG=Rn.12313 /UG_TITLE=ESTs AI030809 protogenin homolog (Gallus gallus) Prtg 315806 NM_001037651 0007275 // multicellular organismal development // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1377805_at AW433937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433937 /DB_XREF=gi:6965244 /DB_XREF=UI-R-BJ0p-afn-c-11-0-UI.s1 /CLONE=UI-R-BJ0p-afn-c-11-0-UI /FEA=EST /CNT=6 /TID=Rn.45092.1 /TIER=ConsEnd /STK=3 /UG=Rn.45092 /UG_TITLE=ESTs, Weakly similar to T14152 synaptic scaffolding protein S-SCAM - rat (R.norvegicus) AW433937 1377806_at BF556273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556273 /DB_XREF=gi:11666003 /DB_XREF=UI-R-A1-em-d-07-0-UI.r1 /CLONE=UI-R-A1-em-d-07-0-UI /FEA=EST /CNT=6 /TID=Rn.15565.1 /TIER=ConsEnd /STK=3 /UG=Rn.15565 /UG_TITLE=ESTs BF556273 Vascular endothelial zinc finger 1 Vezf1 287615 XM_001081191 /// XM_213421 0001525 // angiogenesis // not recorded /// 0001885 // endothelial cell development // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1377807_a_at BF389856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389856 /DB_XREF=gi:11374693 /DB_XREF=UI-R-BS2-bdp-e-05-0-UI.s1 /CLONE=UI-R-BS2-bdp-e-05-0-UI /FEA=EST /CNT=6 /TID=Rn.3917.1 /TIER=ConsEnd /STK=3 /UG=Rn.3917 /UG_TITLE=ESTs BF389856 DDB1 and CUL4 associated factor 6 Dcaf6 289181 XM_001071288 /// XM_002724885 /// XM_002728021 /// XM_213926 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0080008 // CUL4 RING ubiquitin ligase complex // not recorded 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded 1377808_at BF389856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389856 /DB_XREF=gi:11374693 /DB_XREF=UI-R-BS2-bdp-e-05-0-UI.s1 /CLONE=UI-R-BS2-bdp-e-05-0-UI /FEA=EST /CNT=6 /TID=Rn.3917.1 /TIER=ConsEnd /STK=3 /UG=Rn.3917 /UG_TITLE=ESTs BF389856 DDB1 and CUL4 associated factor 6 Dcaf6 289181 XM_001071288 /// XM_002724885 /// XM_002728021 /// XM_213926 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0080008 // CUL4 RING ubiquitin ligase complex // not recorded 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded 1377809_at BE111879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111879 /DB_XREF=gi:8503984 /DB_XREF=UI-R-BS1-azu-a-10-0-UI.s1 /CLONE=UI-R-BS1-azu-a-10-0-UI /FEA=EST /CNT=6 /TID=Rn.32552.1 /TIER=ConsEnd /STK=3 /UG=Rn.32552 /UG_TITLE=ESTs BE111879 similar to CG14483-PA LOC688786 688786 NM_001195245 /// XM_001069626 /// XM_002724767 1377810_at AI408104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408104 /DB_XREF=gi:4251608 /DB_XREF=EST236394 /CLONE=ROVEF64 /FEA=EST /CNT=6 /TID=Rn.41490.1 /TIER=ConsEnd /STK=3 /UG=Rn.41490 /UG_TITLE=ESTs AI408104 Ral GEF with PH domain and SH3 binding motif 2 Ralgps2 304887 NM_001100680 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1377811_at AI577496 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577496 /DB_XREF=gi:4561872 /DB_XREF=UI-R-Y0-vj-e-06-0-UI.s1 /CLONE=UI-R-Y0-vj-e-06-0-UI /FEA=EST /CNT=9 /TID=Rn.38098.1 /TIER=ConsEnd /STK=3 /UG=Rn.38098 /UG_TITLE=ESTs AI577496 ankyrin repeat domain 12 Ankrd12 316775 NM_001108238 1377812_a_at BG378195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378195 /DB_XREF=gi:13302667 /DB_XREF=UI-R-CV1-bvp-b-05-0-UI.s1 /CLONE=UI-R-CV1-bvp-b-05-0-UI /FEA=EST /CNT=8 /TID=Rn.65520.1 /TIER=ConsEnd /STK=3 /UG=Rn.65520 /UG_TITLE=ESTs, Weakly similar to C21O_HUMAN PROTEIN C21ORF2 (H.sapiens) BG378195 C2 calcium-dependent domain containing 2-like C2cd2l 300666 NM_001011996 0016021 // integral to membrane // inferred from electronic annotation 1377813_at BI304066 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI304066 /DB_XREF=gi:14980346 /DB_XREF=UI-R-DR0-cjc-o-08-0-UI.s1 /CLONE=UI-R-DR0-cjc-o-08-0-UI /FEA=EST /CNT=8 /TID=Rn.47882.1 /TIER=ConsEnd /STK=3 /UG=Rn.47882 /UG_TITLE=ESTs, Weakly similar to CA19 RAT COLLAGEN ALPHA 1(IX) CHAIN (R.norvegicus) BI304066 collagen, type XXII, alpha 1 Col22a1 315071 XM_001072793 /// XM_243609 0007155 // cell adhesion // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 1377814_at AA926368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926368 /DB_XREF=gi:4237559 /DB_XREF=UI-R-A1-eu-h-02-0-UI.s1 /CLONE=UI-R-A1-eu-h-02-0-UI /FEA=EST /CNT=8 /TID=Rn.13040.1 /TIER=ConsEnd /STK=3 /UG=Rn.13040 /UG_TITLE=ESTs AA926368 brain expressed, associated with Nedd4 Bean 361358 XM_001057606 /// XM_341638 1377815_at BE102535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102535 /DB_XREF=gi:8494634 /DB_XREF=UI-R-BT1-aqn-g-12-0-UI.s1 /CLONE=UI-R-BT1-aqn-g-12-0-UI /FEA=EST /CNT=8 /TID=Rn.43524.1 /TIER=ConsEnd /STK=3 /UG=Rn.43524 /UG_TITLE=ESTs, Moderately similar to RP14_HUMAN RIBONUCLEASE P PROTEIN SUBUNIT P14 (H.sapiens) BE102535 ribonuclease P 14 subunit (human) Rpp14 361020 NM_001108372 /// NM_001141929 0008033 // tRNA processing // inferred from electronic annotation 0004540 // ribonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1377816_at BG374857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374857 /DB_XREF=gi:13299329 /DB_XREF=UI-R-CV1-bss-c-09-0-UI.s1 /CLONE=UI-R-CV1-bss-c-09-0-UI /FEA=EST /CNT=8 /TID=Rn.15947.1 /TIER=ConsEnd /STK=3 /UG=Rn.15947 /UG_TITLE=ESTs, Highly similar to TRAB_HUMAN TRABID protein (H.sapiens) BG374857 1377817_at BE119683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119683 /DB_XREF=gi:8511788 /DB_XREF=UI-R-CA0-baz-g-02-0-UI.s1 /CLONE=UI-R-CA0-baz-g-02-0-UI /FEA=EST /CNT=7 /TID=Rn.45022.1 /TIER=ConsEnd /STK=3 /UG=Rn.45022 /UG_TITLE=ESTs BE119683 1377818_at AW532426 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532426 /DB_XREF=gi:7174840 /DB_XREF=UI-R-BS0-amo-d-03-0-UI.s1 /CLONE=UI-R-BS0-amo-d-03-0-UI /FEA=EST /CNT=7 /TID=Rn.21208.1 /TIER=ConsEnd /STK=3 /UG=Rn.21208 /UG_TITLE=ESTs AW532426 1377819_at AA955441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955441 /DB_XREF=gi:4237796 /DB_XREF=UI-R-A1-ew-d-11-0-UI.s1 /CLONE=UI-R-A1-ew-d-11-0-UI /FEA=EST /CNT=7 /TID=Rn.22904.1 /TIER=ConsEnd /STK=3 /UG=Rn.22904 /UG_TITLE=ESTs AA955441 similar to mKIAA1111 protein RGD1561065 317425 NM_001108253 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377820_a_at BI276525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276525 /DB_XREF=gi:14921513 /DB_XREF=UI-R-CX0-bwv-d-03-0-UI.s1 /CLONE=UI-R-CX0-bwv-d-03-0-UI /FEA=EST /CNT=7 /TID=Rn.7359.1 /TIER=ConsEnd /STK=3 /UG=Rn.7359 /UG_TITLE=ESTs BI276525 arginyltransferase 1 Ate1 293526 NM_001106300 0016598 // protein arginylation // inferred from electronic annotation /// 0016598 // protein arginylation // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0004057 // arginyltransferase activity // inferred from electronic annotation /// 0004057 // arginyltransferase activity // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1377821_at BI284288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284288 /DB_XREF=gi:14936828 /DB_XREF=UI-R-CX0s-ccq-d-05-0-UI.s1 /CLONE=UI-R-CX0s-ccq-d-05-0-UI /FEA=EST /CNT=7 /TID=Rn.12019.1 /TIER=ConsEnd /STK=3 /UG=Rn.12019 /UG_TITLE=ESTs BI284288 1377822_at AI179605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179605 /DB_XREF=gi:3730243 /DB_XREF=EST223328 /CLONE=RSPCJ48 /FEA=EST /CNT=7 /TID=Rn.16335.2 /TIER=ConsEnd /STK=3 /UG=Rn.16335 /UG_TITLE=ESTs AI179605 coiled-coil domain containing 64 Ccdc64 304537 NM_001191667 /// XM_001080211 /// XM_222240 0031175 // neuron projection development // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0055107 // Golgi to secretory granule transport // not recorded 0005813 // centrosome // not recorded 0017137 // Rab GTPase binding // not recorded /// 0034452 // dynactin binding // not recorded 1377823_at AW531363 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531363 /DB_XREF=gi:7173777 /DB_XREF=UI-R-BS0-amm-a-03-0-UI.s1 /CLONE=UI-R-BS0-amm-a-03-0-UI /FEA=EST /CNT=7 /TID=Rn.23110.2 /TIER=ConsEnd /STK=3 /UG=Rn.23110 /UG_TITLE=ESTs AW531363 1377824_a_at AI230709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230709 /DB_XREF=gi:4135583 /DB_XREF=EST227404 /CLONE=REMDA27 /FEA=EST /CNT=7 /TID=Rn.31564.1 /TIER=ConsEnd /STK=3 /UG=Rn.31564 /UG_TITLE=ESTs, Weakly similar to PCB3_MOUSE POLY(RC)-BINDING PROTEIN 3 (ALPHA-CP3) (M.musculus) AI230709 insulin-like growth factor 2 mRNA binding protein 3 Igf2bp3 312320 NM_001047888 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // not recorded /// 0005515 // protein binding // not recorded /// 0048027 // mRNA 5'-UTR binding // not recorded 1377825_at AI411841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411841 /DB_XREF=gi:4255345 /DB_XREF=EST240135 /CLONE=RKIEV14 /FEA=EST /CNT=7 /TID=Rn.40256.1 /TIER=ConsEnd /STK=3 /UG=Rn.40256 /UG_TITLE=ESTs AI411841 1377826_at AI176721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176721 /DB_XREF=gi:3727359 /DB_XREF=EST220314 /CLONE=ROVBV93 /FEA=EST /CNT=6 /TID=Rn.17666.1 /TIER=ConsEnd /STK=3 /UG=Rn.17666 /UG_TITLE=ESTs AI176721 1377827_at AA851587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851587 /DB_XREF=gi:2939127 /DB_XREF=EST194355 /CLONE=RPLAJ32 /FEA=EST /CNT=6 /TID=Rn.22292.1 /TIER=ConsEnd /STK=3 /UG=Rn.22292 /UG_TITLE=ESTs AA851587 serum response factor binding protein 1 Srfbp1 291469 NM_001005536 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1377828_at BG672090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672090 /DB_XREF=gi:13894189 /DB_XREF=DRNCBH06 /CLONE=DRNCBH06 /FEA=EST /CNT=6 /TID=Rn.46882.1 /TIER=ConsEnd /STK=3 /UG=Rn.46882 /UG_TITLE=ESTs BG672090 Anoctamin 3 Ano3 311287 XM_001080134 /// XM_230381 1377829_at BI291153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291153 /DB_XREF=gi:14950426 /DB_XREF=UI-R-DK0-cgh-b-12-0-UI.s1 /CLONE=UI-R-DK0-cgh-b-12-0-UI /FEA=EST /CNT=6 /TID=Rn.28362.1 /TIER=ConsEnd /STK=3 /UG=Rn.28362 /UG_TITLE=ESTs BI291153 centrosomal protein 57kDa Cep57 315423 NM_001108124 0000060 // protein import into nucleus, translocation // inferred from electronic annotation /// 0000060 // protein import into nucleus, translocation // not recorded /// 0007286 // spermatid development // inferred from electronic annotation /// 0007286 // spermatid development // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005874 // microtubule // not recorded /// 0015630 // microtubule cytoskeleton // not recorded /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0017134 // fibroblast growth factor binding // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1377830_a_at BF281728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281728 /DB_XREF=gi:11212798 /DB_XREF=EST446319 /CLONE=RGIAQ10 /FEA=EST /CNT=4 /TID=Rn.22205.2 /TIER=ConsEnd /STK=2 /UG=Rn.22205 /UG_TITLE=ESTs, Weakly similar to Q4ECKR fucose operon U protein - Escherichia coli (E.coli) BF281728 similar to RIKEN cDNA 1810014F10 gene RGD1311186 293587 NM_001106310 0008643 // carbohydrate transport // inferred from electronic annotation 1377831_at BF285316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285316 /DB_XREF=gi:11216386 /DB_XREF=EST449907 /CLONE=RGIFD42 /FEA=EST /CNT=6 /TID=Rn.16867.1 /TIER=ConsEnd /STK=3 /UG=Rn.16867 /UG_TITLE=ESTs BF285316 Monoamine oxidase A Maoa 29253 NM_033653 0006584 // catecholamine metabolic process // inferred from electronic annotation /// 0042135 // neurotransmitter catabolic process // inferred from electronic annotation /// 0042420 // dopamine catabolic process // not recorded /// 0042424 // catecholamine catabolic process // non-traceable author statement /// 0042428 // serotonin metabolic process // inferred from direct assay /// 0042428 // serotonin metabolic process // inferred from mutant phenotype /// 0042443 // phenylethylamine metabolic process // inferred from direct assay /// 0042443 // phenylethylamine metabolic process // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005741 // mitochondrial outer membrane // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008131 // primary amine oxidase activity // inferred from direct assay /// 0008131 // primary amine oxidase activity // inferred from mutant phenotype /// 0008131 // primary amine oxidase activity // not recorded /// 0008131 // primary amine oxidase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from direct assay /// 0050660 // FAD or FADH2 binding // inferred from mutant phenotype /// 0051378 // serotonin binding // inferred from direct assay /// 0051378 // serotonin binding // inferred from mutant phenotype 1377832_at BE109322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109322 /DB_XREF=gi:8501427 /DB_XREF=UI-R-BJ1-auq-e-11-0-UI.s1 /CLONE=UI-R-BJ1-auq-e-11-0-UI /FEA=EST /CNT=6 /TID=Rn.14848.1 /TIER=ConsEnd /STK=3 /UG=Rn.14848 /UG_TITLE=ESTs, Moderately similar to A55748 protein kinase (M.musculus) BE109322 polo-like kinase 4 (Drosophila) Plk4 310344 NM_001107669 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0046601 // positive regulation of centriole replication // not recorded /// 0046601 // positive regulation of centriole replication // inferred from sequence or structural similarity /// 0046601 // positive regulation of centriole replication // inferred from electronic annotation /// 0060707 // trophoblast giant cell differentiation // not recorded /// 0060707 // trophoblast giant cell differentiation // inferred from sequence or structural similarity /// 0060707 // trophoblast giant cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005814 // centriole // not recorded /// 0005814 // centriole // inferred from sequence or structural similarity /// 0005814 // centriole // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1377833_at BF396950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396950 /DB_XREF=gi:11381933 /DB_XREF=UI-R-BS2-beb-a-09-0-UI.s1 /CLONE=UI-R-BS2-beb-a-09-0-UI /FEA=EST /CNT=6 /TID=Rn.20916.1 /TIER=ConsEnd /STK=3 /UG=Rn.20916 /UG_TITLE=ESTs BF396950 RAP1 interacting factor homolog (yeast) Rif1 295602 XM_001065608 /// XM_215736 0019827 // stem cell maintenance // not recorded 0000781 // chromosome, telomeric region // not recorded /// 0001939 // female pronucleus // not recorded /// 0001940 // male pronucleus // not recorded /// 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1377834_at AW434262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434262 /DB_XREF=gi:6965569 /DB_XREF=UI-R-BJ0p-afw-b-07-0-UI.s1 /CLONE=UI-R-BJ0p-afw-b-07-0-UI /FEA=EST /CNT=6 /TID=Rn.15650.1 /TIER=ConsEnd /STK=3 /UG=Rn.15650 /UG_TITLE=ESTs AW434262 enhancer of polycomb homolog 1 LOC100362678 100362678 XM_002725273 /// XM_002728490 1377835_at BM390876 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390876 /DB_XREF=gi:18190929 /DB_XREF=UI-R-CN1-cjp-e-01-0-UI.s1 /CLONE=UI-R-CN1-cjp-e-01-0-UI /FEA=EST /CNT=6 /TID=Rn.34308.1 /TIER=ConsEnd /STK=3 /UG=Rn.34308 /UG_TITLE=ESTs BM390876 dedicator of cytokinesis 8 Dock8 499337 NM_001037793 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0051020 // GTPase binding // inferred from electronic annotation 1377836_at AI638997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI638997 /DB_XREF=gi:4700031 /DB_XREF=rx05048s /CLONE=rx05048 /FEA=EST /CNT=6 /TID=Rn.43898.1 /TIER=ConsEnd /STK=3 /UG=Rn.43898 /UG_TITLE=ESTs AI638997 zinc finger protein 280D Zfp280d 315798 NM_001108165 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1377837_at AI231532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231532 /DB_XREF=gi:3815412 /DB_XREF=EST228220 /CLONE=REMDL52 /FEA=EST /CNT=6 /TID=Rn.18838.1 /TIER=ConsEnd /STK=3 /UG=Rn.18838 /UG_TITLE=ESTs, Highly similar to Z183_HUMAN ZINC FINGER PROTEIN 183 (H.sapiens) AI231532 ring finger protein 113A2 Rnf113a2 314313 NM_001004445 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377838_at BI287018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287018 /DB_XREF=gi:14942216 /DB_XREF=UI-R-CT0s-cax-a-02-0-UI.s1 /CLONE=UI-R-CT0s-cax-a-02-0-UI /FEA=EST /CNT=6 /TID=Rn.19005.1 /TIER=ConsEnd /STK=3 /UG=Rn.19005 /UG_TITLE=ESTs BI287018 similar to RIKEN cDNA 0610039J04 RGD1562218 292100 NM_001034919 1377839_at BG378776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378776 /DB_XREF=gi:13303248 /DB_XREF=UI-R-CV1-bvs-g-01-0-UI.s1 /CLONE=UI-R-CV1-bvs-g-01-0-UI /FEA=EST /CNT=6 /TID=Rn.28694.1 /TIER=ConsEnd /STK=3 /UG=Rn.28694 /UG_TITLE=ESTs BG378776 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 Agap3 362300 NM_001108616 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1377840_at BF415080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415080 /DB_XREF=gi:11403069 /DB_XREF=UI-R-BJ2-bou-d-10-0-UI.s1 /CLONE=UI-R-BJ2-bou-d-10-0-UI /FEA=EST /CNT=6 /TID=Rn.6807.1 /TIER=ConsEnd /STK=3 /UG=Rn.6807 /UG_TITLE=ESTs BF415080 1377841_at AW142828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142828 /DB_XREF=gi:6162727 /DB_XREF=EST293082 /CLONE=RGIAW46 /FEA=EST /CNT=6 /TID=Rn.23877.1 /TIER=ConsEnd /STK=3 /UG=Rn.23877 /UG_TITLE=ESTs AW142828 1377842_at AW533281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533281 /DB_XREF=gi:7175695 /DB_XREF=UI-R-BU0-anf-a-09-0-UI.s1 /CLONE=UI-R-BU0-anf-a-09-0-UI /FEA=EST /CNT=6 /TID=Rn.48089.1 /TIER=ConsEnd /STK=3 /UG=Rn.48089 /UG_TITLE=ESTs, Weakly similar to S67249 probable membrane protein YOR340c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AW533281 TWIST neighbor Twistnb 362728 NM_001108707 0006350 // transcription // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation 1377843_at BF548385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548385 /DB_XREF=gi:11639492 /DB_XREF=UI-R-C0-hx-h-01-0-UI.r1 /CLONE=UI-R-C0-hx-h-01-0-UI /FEA=EST /CNT=6 /TID=Rn.23241.1 /TIER=ConsEnd /STK=3 /UG=Rn.23241 /UG_TITLE=ESTs BF548385 1377844_at AI411520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411520 /DB_XREF=gi:4255024 /DB_XREF=EST239814 /CLONE=RKIEK12 /FEA=EST /CNT=6 /TID=Rn.15309.1 /TIER=ConsEnd /STK=3 /UG=Rn.15309 /UG_TITLE=ESTs AI411520 prostaglandin reductase 2 Ptgr2 299194 NM_001015009 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0047522 // 15-oxoprostaglandin 13-oxidase activity // inferred from electronic annotation 1377845_at BM391291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391291 /DB_XREF=gi:18191344 /DB_XREF=UI-R-DY0-ckq-f-21-0-UI.s1 /CLONE=UI-R-DY0-ckq-f-21-0-UI /FEA=EST /CNT=6 /TID=Rn.21109.1 /TIER=ConsEnd /STK=3 /UG=Rn.21109 /UG_TITLE=ESTs, Weakly similar to FMR2_MOUSE Fragile X mental retardation protein 2 homolog (Protein FMR-2) (FMR2P) (Ox19 protein) (M.musculus) BM391291 AF4/FMR2 family, member 3 Aff3 363220 NM_001191887 /// XM_001058147 /// XM_343559 1377846_a_at AA819391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819391 /DB_XREF=gi:4228529 /DB_XREF=UI-R-A0-bk-h-07-0-UI.s1 /CLONE=UI-R-A0-bk-h-07-0-UI /FEA=EST /CNT=6 /TID=Rn.16755.1 /TIER=ConsEnd /STK=3 /UG=Rn.16755 /UG_TITLE=ESTs, Weakly similar to mismatch repair protein (Rattus norvegicus) (R.norvegicus) AA819391 rCG61559-like LOC100360342 100360342 XM_002726719 /// XM_002729597 0006298 // mismatch repair // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0030983 // mismatched DNA binding // inferred from electronic annotation 1377847_at BE098450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098450 /DB_XREF=gi:8490314 /DB_XREF=UI-R-BJ1-atc-b-05-0-UI.s1 /CLONE=UI-R-BJ1-atc-b-05-0-UI /FEA=EST /CNT=5 /TID=Rn.21429.1 /TIER=ConsEnd /STK=3 /UG=Rn.21429 /UG_TITLE=ESTs BE098450 1377848_at AW535219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535219 /DB_XREF=gi:7177678 /DB_XREF=UI-R-C4-alv-b-06-0-UI.s1 /CLONE=UI-R-C4-alv-b-06-0-UI /FEA=EST /CNT=5 /TID=Rn.24666.1 /TIER=ConsEnd /STK=3 /UG=Rn.24666 /UG_TITLE=ESTs AW535219 family with sequence similarity 175, member A Fam175a 289468 NM_001009633 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // not recorded /// 0006302 // double-strand break repair // inferred from sequence or structural similarity /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010212 // response to ionizing radiation // not recorded /// 0010212 // response to ionizing radiation // inferred from sequence or structural similarity /// 0010212 // response to ionizing radiation // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0031572 // G2/M transition DNA damage checkpoint // not recorded /// 0031572 // G2/M transition DNA damage checkpoint // inferred from sequence or structural similarity /// 0031572 // G2/M transition DNA damage checkpoint // inferred from electronic annotation /// 0045739 // positive regulation of DNA repair // not recorded /// 0045739 // positive regulation of DNA repair // inferred from sequence or structural similarity /// 0045739 // positive regulation of DNA repair // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0070531 // BRCA1-A complex // not recorded /// 0070531 // BRCA1-A complex // inferred from sequence or structural similarity /// 0070531 // BRCA1-A complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0031593 // polyubiquitin binding // not recorded /// 0031593 // polyubiquitin binding // inferred from sequence or structural similarity /// 0031593 // polyubiquitin binding // inferred from electronic annotation 1377849_at BI284363 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284363 /DB_XREF=gi:14936973 /DB_XREF=UI-R-CX0s-cco-c-07-0-UI.s1 /CLONE=UI-R-CX0s-cco-c-07-0-UI /FEA=EST /CNT=5 /TID=Rn.22017.1 /TIER=ConsEnd /STK=3 /UG=Rn.22017 /UG_TITLE=ESTs BI284363 valosin containing protein (p97)/p47 complex interacting protein 1 Vcpip1 286761 NM_176857 0007030 // Golgi organization // inferred from mutant phenotype /// 0007067 // mitosis // inferred from mutant phenotype /// 0016320 // endoplasmic reticulum membrane fusion // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // inferred from electronic annotation 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0005515 // protein binding // inferred from mutant phenotype /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1377850_at AI178231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178231 /DB_XREF=gi:3728869 /DB_XREF=EST221896 /CLONE=RPLCN79 /FEA=EST /CNT=5 /TID=Rn.16240.1 /TIER=ConsEnd /STK=3 /UG=Rn.16240 /UG_TITLE=ESTs AI178231 zinc and ring finger 2 Znrf2 362367 NM_001108628 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377851_at AI012250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012250 /DB_XREF=gi:3226082 /DB_XREF=EST206701 /CLONE=RPLAU45 /FEA=EST /CNT=5 /TID=Rn.37759.1 /TIER=ConsEnd /STK=3 /UG=Rn.37759 /UG_TITLE=ESTs AI012250 1377852_at BF410258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410258 /DB_XREF=gi:11398233 /DB_XREF=UI-R-CA1-bjv-d-03-0-UI.s1 /CLONE=UI-R-CA1-bjv-d-03-0-UI /FEA=EST /CNT=5 /TID=Rn.61635.1 /TIER=ConsEnd /STK=3 /UG=Rn.61635 /UG_TITLE=ESTs BF410258 1377853_at AI599177 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599177 /DB_XREF=gi:4608225 /DB_XREF=EST250880 /CLONE=REMET62 /FEA=EST /CNT=5 /TID=Rn.9411.1 /TIER=ConsEnd /STK=3 /UG=Rn.9411 /UG_TITLE=ESTs AI599177 teashirt zinc finger homeobox 3 Tshz3 308523 NM_001107506 0001656 // metanephros development // not recorded /// 0001657 // ureteric bud development // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0002087 // regulation of respiratory gaseous exchange by neurological system process // inferred from sequence or structural similarity /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048745 // smooth muscle tissue development // not recorded /// 0050881 // musculoskeletal movement // not recorded /// 0050975 // sensory perception of touch // not recorded /// 0051152 // positive regulation of smooth muscle cell differentiation // not recorded /// 0060993 // kidney morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0030426 // growth cone // inferred from direct assay /// 0030426 // growth cone // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377854_at AI406343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406343 /DB_XREF=gi:4249847 /DB_XREF=EST234629 /CLONE=RBRDM42 /FEA=EST /CNT=5 /TID=Rn.15355.1 /TIER=ConsEnd /STK=3 /UG=Rn.15355 /UG_TITLE=ESTs AI406343 1377855_at BE111774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111774 /DB_XREF=gi:8503879 /DB_XREF=UI-R-BJ1-avx-f-08-0-UI.s1 /CLONE=UI-R-BJ1-avx-f-08-0-UI /FEA=EST /CNT=5 /TID=Rn.18672.1 /TIER=ConsEnd /STK=3 /UG=Rn.18672 /UG_TITLE=ESTs BE111774 coiled-coil domain containing 41 Ccdc41 366872 NM_001014266 1377856_at BE113045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113045 /DB_XREF=gi:8505150 /DB_XREF=UI-R-BJ1-awf-g-03-0-UI.s1 /CLONE=UI-R-BJ1-awf-g-03-0-UI /FEA=EST /CNT=5 /TID=Rn.8961.1 /TIER=ConsEnd /STK=3 /UG=Rn.8961 /UG_TITLE=ESTs BE113045 1377857_at BF291163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291163 /DB_XREF=gi:11222233 /DB_XREF=EST455754 /CLONE=RGIIJ55 /FEA=EST /CNT=5 /TID=Rn.41806.1 /TIER=ConsEnd /STK=3 /UG=Rn.41806 /UG_TITLE=ESTs BF291163 1377858_at BE120443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120443 /DB_XREF=gi:8512548 /DB_XREF=UI-R-CA0-bam-e-03-0-UI.s1 /CLONE=UI-R-CA0-bam-e-03-0-UI /FEA=EST /CNT=5 /TID=Rn.64942.1 /TIER=ConsEnd /STK=3 /UG=Rn.64942 /UG_TITLE=ESTs, Moderately similar to I38902 retinoblastoma binding protein RIZ (H.sapiens) BE120443 PR domain containing 2, with ZNF domain Prdm2 313678 NM_001077648 0006350 // transcription // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377859_s_at BE120443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120443 /DB_XREF=gi:8512548 /DB_XREF=UI-R-CA0-bam-e-03-0-UI.s1 /CLONE=UI-R-CA0-bam-e-03-0-UI /FEA=EST /CNT=5 /TID=Rn.64942.1 /TIER=ConsEnd /STK=3 /UG=Rn.64942 /UG_TITLE=ESTs, Moderately similar to I38902 retinoblastoma binding protein RIZ (H.sapiens) BE120443 PR domain containing 2, with ZNF domain Prdm2 313678 NM_001077648 0006350 // transcription // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377860_at BM392227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392227 /DB_XREF=gi:18192280 /DB_XREF=UI-R-DO1-ckp-d-23-0-UI.s1 /CLONE=UI-R-DO1-ckp-d-23-0-UI /FEA=EST /CNT=5 /TID=Rn.24344.1 /TIER=ConsEnd /STK=3 /UG=Rn.24344 /UG_TITLE=ESTs, Weakly similar to T15736 hypothetical protein C32D5.6 - Caenorhabditis elegans (C.elegans) BM392227 tetratricopeptide repeat domain 39B Ttc39b 298186 NM_001106665 0005488 // binding // inferred from electronic annotation 1377861_at AI011151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011151 /DB_XREF=gi:3224983 /DB_XREF=EST205602 /CLONE=ROVAQ18 /FEA=EST /CNT=5 /TID=Rn.40264.2 /TIER=ConsEnd /STK=3 /UG=Rn.40264 /UG_TITLE=ESTs AI011151 1377862_at BI274618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274618 /DB_XREF=gi:14885691 /DB_XREF=UI-R-CX0-bws-a-08-0-UI.s1 /CLONE=UI-R-CX0-bws-a-08-0-UI /FEA=EST /CNT=5 /TID=Rn.17298.1 /TIER=ConsEnd /STK=3 /UG=Rn.17298 /UG_TITLE=ESTs BI274618 1377863_at BI303977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303977 /DB_XREF=gi:14980257 /DB_XREF=UI-R-DR0-cjc-i-17-0-UI.s1 /CLONE=UI-R-DR0-cjc-i-17-0-UI /FEA=EST /CNT=5 /TID=Rn.16236.1 /TIER=ConsEnd /STK=3 /UG=Rn.16236 /UG_TITLE=ESTs BI303977 lysine (K)-specific demethylase 5B Kdm5b 304809 NM_001107177 0034720 // histone H3-K4 demethylation // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0034647 // histone demethylase activity (H3-trimethyl-K4 specific) // not recorded /// 0034648 // histone demethylase activity (H3-dimethyl-K4 specific) // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1377864_at BF393865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393865 /DB_XREF=gi:11378728 /DB_XREF=UI-R-CA0-bgv-h-08-0-UI.s1 /CLONE=UI-R-CA0-bgv-h-08-0-UI /FEA=EST /CNT=5 /TID=Rn.49259.1 /TIER=ConsEnd /STK=3 /UG=Rn.49259 /UG_TITLE=ESTs BF393865 similar to RIKEN cDNA C130022K22 gene RGD1305225 297458 NM_001009659 1377865_at AI411393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411393 /DB_XREF=gi:4254897 /DB_XREF=EST239687 /CLONE=RKIES57 /FEA=EST /CNT=5 /TID=Rn.7900.1 /TIER=ConsEnd /STK=3 /UG=Rn.7900 /UG_TITLE=ESTs AI411393 1377866_a_at AI232147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232147 /DB_XREF=gi:4135720 /DB_XREF=EST228835 /CLONE=RKIBX46 /FEA=EST /CNT=5 /TID=Rn.54975.1 /TIER=ConsEnd /STK=3 /UG=Rn.54975 /UG_TITLE=ESTs, Highly similar to geranylgeranyl diphosphate synthase 1; GGPP synthase (Mus musculus) (M.musculus) AI232147 geranylgeranyl diphosphate synthase 1 Ggps1 291211 NM_001007626 0006720 // isoprenoid metabolic process // not recorded /// 0006720 // isoprenoid metabolic process // inferred from sequence or structural similarity /// 0006720 // isoprenoid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation 0005625 // soluble fraction // not recorded /// 0005625 // soluble fraction // inferred from sequence or structural similarity /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004161 // dimethylallyltranstransferase activity // inferred from electronic annotation /// 0004311 // farnesyltranstransferase activity // not recorded /// 0004311 // farnesyltranstransferase activity // inferred from sequence or structural similarity /// 0004311 // farnesyltranstransferase activity // inferred from electronic annotation /// 0004337 // geranyltranstransferase activity // inferred from electronic annotation /// 0004337 // geranyltranstransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377867_at BM390001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390001 /DB_XREF=gi:18190054 /DB_XREF=UI-R-CN1-cjo-k-04-0-UI.s1 /CLONE=UI-R-CN1-cjo-k-04-0-UI /FEA=EST /CNT=5 /TID=Rn.7474.1 /TIER=ConsEnd /STK=3 /UG=Rn.7474 /UG_TITLE=ESTs, Moderately similar to I37421 glutaminyl-peptide cyclotransferase (H.sapiens) BM390001 similar to Glutaminyl-peptide cyclotransferase precursor (QC) RGD1562284 313837 NM_001134557 0006508 // proteolysis // inferred from electronic annotation 0008233 // peptidase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1377868_at AW530090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530090 /DB_XREF=gi:7172504 /DB_XREF=UI-R-C4-ald-d-12-0-UI.s1 /CLONE=UI-R-C4-ald-d-12-0-UI /FEA=EST /CNT=5 /TID=Rn.45795.1 /TIER=ConsEnd /STK=3 /UG=Rn.45795 /UG_TITLE=ESTs, Weakly similar to T00068 hypothetical protein KIAA0443 (H.sapiens) AW530090 G protein-coupled receptor associated sorting protein 2 Gprasp2 317405 XM_001054048 /// XM_228821 0005737 // cytoplasm // not recorded 0001540 // beta-amyloid binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1377869_at BI284261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284261 /DB_XREF=gi:14936780 /DB_XREF=UI-R-CX0s-ccq-a-10-0-UI.s1 /CLONE=UI-R-CX0s-ccq-a-10-0-UI /FEA=EST /CNT=5 /TID=Rn.15040.1 /TIER=ConsEnd /STK=3 /UG=Rn.15040 /UG_TITLE=ESTs, Highly similar to A2MG RAT ALPHA-2-MACROGLOBULIN PRECURSOR (R.norvegicus) BI284261 CCR4 carbon catabolite repression 4-like (S. cerevisiae) Ccrn4l 310395 NM_138526 0048511 // rhythmic process // inferred from electronic annotation 1377870_at BM392277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392277 /DB_XREF=gi:18192330 /DB_XREF=UI-R-DO1-ckp-n-21-0-UI.s1 /CLONE=UI-R-DO1-ckp-n-21-0-UI /FEA=EST /CNT=5 /TID=Rn.22999.1 /TIER=ConsEnd /STK=3 /UG=Rn.22999 /UG_TITLE=ESTs, Moderately similar to T43460 hypothetical protein DKFZp434P1721.1 (H.sapiens) BM392277 similar to jumonji domain containing 2B LOC301128 301128 NM_001044236 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1377871_at AI103528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103528 /DB_XREF=gi:3708062 /DB_XREF=EST212817 /CLONE=REMCD11 /FEA=EST /CNT=5 /TID=Rn.22336.1 /TIER=ConsEnd /STK=3 /UG=Rn.22336 /UG_TITLE=ESTs AI103528 1377872_at BM383822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383822 /DB_XREF=gi:18183875 /DB_XREF=UI-R-DM1-ckb-n-15-0-UI.s1 /CLONE=UI-R-DM1-ckb-n-15-0-UI /FEA=EST /CNT=5 /TID=Rn.35387.1 /TIER=ConsEnd /STK=3 /UG=Rn.35387 /UG_TITLE=ESTs, Weakly similar to QQECP7 ybeB protein - Escherichia coli (E.coli) BM383822 similar to chromosome 7 open reading frame 30 RGD1306936 297082 NM_001106593 1377873_at AW251736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251736 /DB_XREF=gi:6595327 /DB_XREF=UI-R-BJ0-aef-c-10-0-UI.s1 /CLONE=UI-R-BJ0-aef-c-10-0-UI /FEA=EST /CNT=5 /TID=Rn.37888.1 /TIER=ConsEnd /STK=3 /UG=Rn.37888 /UG_TITLE=ESTs AW251736 1377874_at BI290527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290527 /DB_XREF=gi:14949178 /DB_XREF=UI-R-DK0-cgd-c-11-0-UI.s1 /CLONE=UI-R-DK0-cgd-c-11-0-UI /FEA=EST /CNT=5 /TID=Rn.48068.1 /TIER=ConsEnd /STK=3 /UG=Rn.48068 /UG_TITLE=ESTs BI290527 1377875_at BF400747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400747 /DB_XREF=gi:11388722 /DB_XREF=UI-R-CA0-bhf-b-01-0-UI.s1 /CLONE=UI-R-CA0-bhf-b-01-0-UI /FEA=EST /CNT=5 /TID=Rn.17760.1 /TIER=ConsEnd /STK=3 /UG=Rn.17760 /UG_TITLE=ESTs BF400747 1377876_at AI008688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008688 /DB_XREF=gi:3222520 /DB_XREF=EST203139 /CLONE=REMBB66 /FEA=EST /CNT=5 /TID=Rn.13837.1 /TIER=ConsEnd /STK=3 /UG=Rn.13837 /UG_TITLE=ESTs AI008688 1377877_at BF397870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397870 /DB_XREF=gi:11382854 /DB_XREF=UI-R-BS2-bec-f-03-0-UI.s1 /CLONE=UI-R-BS2-bec-f-03-0-UI /FEA=EST /CNT=5 /TID=Rn.60010.1 /TIER=ConsEnd /STK=3 /UG=Rn.60010 /UG_TITLE=ESTs BF397870 1377878_at AA800782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800782 /DB_XREF=gi:4131537 /DB_XREF=EST190279 /CLONE=RLUAL38 /FEA=EST /CNT=5 /TID=Rn.3621.1 /TIER=ConsEnd /STK=3 /UG=Rn.3621 /UG_TITLE=ESTs AA800782 fibroblast growth factor binding protein 3 Fgfbp3 499349 NM_001109165 0043117 // positive regulation of vascular permeability // not recorded /// 0045743 // positive regulation of fibroblast growth factor receptor signaling pathway // not recorded 0005576 // extracellular region // not recorded 0008201 // heparin binding // not recorded /// 0017134 // fibroblast growth factor binding // not recorded 1377879_at BE102375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102375 /DB_XREF=gi:8494474 /DB_XREF=UI-R-BT1-aql-g-11-0-UI.s1 /CLONE=UI-R-BT1-aql-g-11-0-UI /FEA=EST /CNT=5 /TID=Rn.47404.1 /TIER=ConsEnd /STK=3 /UG=Rn.47404 /UG_TITLE=ESTs BE102375 1377880_at AI170633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170633 /DB_XREF=gi:3710673 /DB_XREF=EST216567 /CLONE=RMUAZ24 /FEA=EST /CNT=5 /TID=Rn.28433.1 /TIER=ConsEnd /STK=3 /UG=Rn.28433 /UG_TITLE=ESTs AI170633 1377881_at AA997027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997027 /DB_XREF=gi:4280790 /DB_XREF=UI-R-C0-hk-a-05-0-UI.s1 /CLONE=UI-R-C0-hk-a-05-0-UI /FEA=EST /CNT=5 /TID=Rn.13383.1 /TIER=ConsEnd /STK=3 /UG=Rn.13383 /UG_TITLE=ESTs AA997027 1377882_at AA996414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996414 /DB_XREF=gi:4280181 /DB_XREF=UI-R-C0-he-f-07-0-UI.s1 /CLONE=UI-R-C0-he-f-07-0-UI /FEA=EST /CNT=5 /TID=Rn.6774.1 /TIER=ConsEnd /STK=3 /UG=Rn.6774 /UG_TITLE=ESTs, Moderately similar to S18827 Flt3 protein - mouse (M.musculus) AA996414 fms-related tyrosine kinase 3 Flt3 140635 NM_001100822 0002318 // myeloid progenitor cell differentiation // not recorded /// 0002320 // lymphoid progenitor cell differentiation // not recorded /// 0002328 // pro-B cell differentiation // not recorded /// 0002572 // pro-T cell differentiation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0030097 // hemopoiesis // not recorded /// 0030098 // lymphocyte differentiation // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0045578 // negative regulation of B cell differentiation // not recorded /// 0046777 // protein autophosphorylation // not recorded /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0043234 // protein complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0032403 // protein complex binding // not recorded /// 0035259 // glucocorticoid receptor binding // inferred from physical interaction /// 0035259 // glucocorticoid receptor binding // not recorded /// 0043548 // phosphoinositide 3-kinase binding // not recorded 1377883_at AI717530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717530 /DB_XREF=gi:5034786 /DB_XREF=UI-R-Y0-acp-c-05-0-UI.s1 /CLONE=UI-R-Y0-acp-c-05-0-UI /FEA=EST /CNT=5 /TID=Rn.29913.1 /TIER=ConsEnd /STK=3 /UG=Rn.29913 /UG_TITLE=ESTs AI717530 1377884_at BG671879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671879 /DB_XREF=gi:13893978 /DB_XREF=DRNBZB01 /CLONE=DRNBZB01 /FEA=EST /CNT=5 /TID=Rn.16218.1 /TIER=ConsEnd /STK=3 /UG=Rn.16218 /UG_TITLE=ESTs BG671879 1377885_at BI281851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281851 /DB_XREF=gi:14932015 /DB_XREF=UI-R-CU0s-cbt-c-09-0-UI.s1 /CLONE=UI-R-CU0s-cbt-c-09-0-UI /FEA=EST /CNT=5 /TID=Rn.20787.1 /TIER=ConsEnd /STK=3 /UG=Rn.20787 /UG_TITLE=ESTs BI281851 hypothetical protein LOC685203 LOC685203 685203 XM_001062790 /// XM_002727194 1377886_at BI274321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274321 /DB_XREF=gi:14885140 /DB_XREF=UI-R-CW0-bwh-e-08-0-UI.s1 /CLONE=UI-R-CW0-bwh-e-08-0-UI /FEA=EST /CNT=5 /TID=Rn.23298.1 /TIER=ConsEnd /STK=3 /UG=Rn.23298 /UG_TITLE=ESTs BI274321 tripartite motif-containing 6 Trim6 293294 NM_001170461 /// XM_001073689 /// XM_219045 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377887_at AI013044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013044 /DB_XREF=gi:3226876 /DB_XREF=EST207495 /CLONE=RSPBB94 /FEA=EST /CNT=5 /TID=Rn.17920.1 /TIER=ConsEnd /STK=3 /UG=Rn.17920 /UG_TITLE=ESTs AI013044 1377888_at BE112089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112089 /DB_XREF=gi:8504194 /DB_XREF=UI-R-BJ1-avk-e-08-0-UI.s1 /CLONE=UI-R-BJ1-avk-e-08-0-UI /FEA=EST /CNT=5 /TID=Rn.41189.1 /TIER=ConsEnd /STK=3 /UG=Rn.41189 /UG_TITLE=ESTs BE112089 Ring finger protein 207 Rnf207 691246 XM_001075996 /// XM_002726663 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377889_at BM388416 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388416 /DB_XREF=gi:18188469 /DB_XREF=UI-R-CN1-cjn-m-07-0-UI.s1 /CLONE=UI-R-CN1-cjn-m-07-0-UI /FEA=EST /CNT=5 /TID=Rn.12586.1 /TIER=ConsEnd /STK=3 /UG=Rn.12586 /UG_TITLE=ESTs, Weakly similar to Y539_HUMAN HYPOTHETICAL PROTEIN KIAA0539 (H.sapiens) BM388416 URB1 ribosome biogenesis 1 homolog (S. cerevisiae) Urb1 304104 NM_001191661 /// XM_001073237 /// XM_221669 0005730 // nucleolus // not recorded 0005515 // protein binding // not recorded 1377890_at AI411360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411360 /DB_XREF=gi:4254864 /DB_XREF=EST239654 /CLONE=RKIES31 /FEA=EST /CNT=5 /TID=Rn.41920.1 /TIER=ConsEnd /STK=3 /UG=Rn.41920 /UG_TITLE=ESTs AI411360 1377891_at AI407265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407265 /DB_XREF=gi:4250769 /DB_XREF=EST235553 /CLONE=ROVDQ36 /FEA=EST /CNT=5 /TID=Rn.6851.1 /TIER=ConsEnd /STK=3 /UG=Rn.6851 /UG_TITLE=ESTs AI407265 similar to Protein SYS1 homolog LOC685079 685079 XM_001062200 /// XM_002726293 1377892_at BM390000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390000 /DB_XREF=gi:18190053 /DB_XREF=UI-R-CN1-cjo-k-02-0-UI.s1 /CLONE=UI-R-CN1-cjo-k-02-0-UI /FEA=EST /CNT=5 /TID=Rn.44951.1 /TIER=ConsEnd /STK=3 /UG=Rn.44951 /UG_TITLE=ESTs, Highly similar to SM3F MOUSE SEMAPHORIN 3F PRECURSOR (M.musculus) BM390000 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3 F Sema3f 315996 NM_001108185 0001755 // neural crest cell migration // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0048843 // negative regulation of axon extension involved in axon guidance // not recorded /// 0050919 // negative chemotaxis // not recorded 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0045499 // chemorepellent activity // not recorded 1377893_at BM390475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390475 /DB_XREF=gi:18190528 /DB_XREF=UI-R-CN1-cjq-j-06-0-UI.s1 /CLONE=UI-R-CN1-cjq-j-06-0-UI /FEA=EST /CNT=5 /TID=Rn.33593.1 /TIER=ConsEnd /STK=3 /UG=Rn.33593 /UG_TITLE=ESTs BM390475 Similar to CG3740-PA LOC690000 690000 XM_001073988 /// XM_002725609 /// XM_002728734 1377894_at BF404700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404700 /DB_XREF=gi:11392675 /DB_XREF=UI-R-CA1-bib-f-01-0-UI.s1 /CLONE=UI-R-CA1-bib-f-01-0-UI /FEA=EST /CNT=5 /TID=Rn.24183.1 /TIER=ConsEnd /STK=3 /UG=Rn.24183 /UG_TITLE=ESTs BF404700 1377895_at BF283016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283016 /DB_XREF=gi:11214086 /DB_XREF=EST447607 /CLONE=RGIDW34 /FEA=EST /CNT=5 /TID=Rn.24652.1 /TIER=ConsEnd /STK=3 /UG=Rn.24652 /UG_TITLE=ESTs, Moderately similar to T17331 hypothetical protein DKFZp434C245.1 (H.sapiens) BF283016 WD repeat domain 51A Wdr51a 501048 NM_001109296 1377896_at BF284914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284914 /DB_XREF=gi:11215984 /DB_XREF=EST449505 /CLONE=RGIEX71 /FEA=EST /CNT=5 /TID=Rn.22690.1 /TIER=ConsEnd /STK=3 /UG=Rn.22690 /UG_TITLE=ESTs BF284914 RAB22A, member RAS oncogene family Rab22a 366265 NM_001108966 0006184 // GTP catabolic process // not recorded /// 0006897 // endocytosis // not recorded /// 0006897 // endocytosis // inferred from electronic annotation /// 0007032 // endosome organization // not recorded /// 0007032 // endosome organization // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded 1377897_at AI231330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231330 /DB_XREF=gi:3815210 /DB_XREF=EST228018 /CLONE=REMDI67 /FEA=EST /CNT=5 /TID=Rn.19432.1 /TIER=ConsEnd /STK=3 /UG=Rn.19432 /UG_TITLE=ESTs AI231330 Wolf-Hirschhorn syndrome candidate 1-like 1 (human) Whsc1l1 290831 NM_001106090 0016571 // histone methylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1377898_at AI169113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169113 /DB_XREF=gi:3705421 /DB_XREF=EST214944 /CLONE=RKIBN28 /FEA=EST /CNT=5 /TID=Rn.23867.1 /TIER=ConsEnd /STK=3 /UG=Rn.23867 /UG_TITLE=ESTs AI169113 solute carrier family 39 (metal ion transporter), member 5 Slc39a5 362812 NM_001108728 0015674 // di-, tri-valent inorganic cation transport // not recorded /// 0030001 // metal ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0071577 // zinc ion transmembrane transport // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded 0005385 // zinc ion transmembrane transporter activity // not recorded /// 0046873 // metal ion transmembrane transporter activity // inferred from electronic annotation 1377899_at BF419886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419886 /DB_XREF=gi:11407875 /DB_XREF=UI-R-BJ2-bph-d-04-0-UI.s1 /CLONE=UI-R-BJ2-bph-d-04-0-UI /FEA=EST /CNT=5 /TID=Rn.34157.1 /TIER=ConsEnd /STK=3 /UG=Rn.34157 /UG_TITLE=ESTs BF419886 similar to RIKEN cDNA 2810025M15 RGD1304982 289138 NM_001113775 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1377900_at BF409560 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409560 /DB_XREF=gi:11397535 /DB_XREF=UI-R-CA1-bll-g-03-0-UI.s1 /CLONE=UI-R-CA1-bll-g-03-0-UI /FEA=EST /CNT=5 /TID=Rn.64019.1 /TIER=ConsEnd /STK=3 /UG=Rn.64019 /UG_TITLE=ESTs BF409560 abhydrolase domain containing 14b Abhd14b 300983 NM_001007664 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation 1377901_at BI293892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293892 /DB_XREF=gi:14955822 /DB_XREF=UI-R-DK0-cdw-c-05-0-UI.s1 /CLONE=UI-R-DK0-cdw-c-05-0-UI /FEA=EST /CNT=5 /TID=Rn.43759.1 /TIER=ConsEnd /STK=3 /UG=Rn.43759 /UG_TITLE=ESTs BI293892 F-box and WD repeat domain containing 8 Fbxw8 304522 NM_001107145 0060712 // spongiotrophoblast layer development // not recorded /// 0060716 // labyrinthine layer blood vessel development // not recorded 0019005 // SCF ubiquitin ligase complex // not recorded 0005515 // protein binding // not recorded 1377902_a_at AA893822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893822 /DB_XREF=gi:3020701 /DB_XREF=EST197625 /CLONE=RPLAM02 /FEA=EST /CNT=5 /TID=Rn.8154.1 /TIER=ConsEnd /STK=3 /UG=Rn.8154 /UG_TITLE=ESTs, Moderately similar to RA52 MOUSE DNA REPAIR PROTEIN RAD52 HOMOLOG (M.musculus) AA893822 RAD52 homolog (S. cerevisiae) Rad52 297561 NM_001106617 0000724 // double-strand break repair via homologous recombination // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation 0005654 // nucleoplasm // not recorded 0005515 // protein binding // not recorded 1377903_at AI408914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408914 /DB_XREF=gi:4252418 /DB_XREF=EST237205 /CLONE=ROVES03 /FEA=EST /CNT=5 /TID=Rn.4076.1 /TIER=ConsEnd /STK=3 /UG=Rn.4076 /UG_TITLE=ESTs AI408914 1377904_at BE109251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109251 /DB_XREF=gi:8501356 /DB_XREF=UI-R-BS1-azd-f-07-0-UI.s1 /CLONE=UI-R-BS1-azd-f-07-0-UI /FEA=EST /CNT=5 /TID=Rn.41047.1 /TIER=ConsEnd /STK=3 /UG=Rn.41047 /UG_TITLE=ESTs BE109251 1377905_at BF417956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417956 /DB_XREF=gi:11405945 /DB_XREF=UI-R-CA0-bly-e-11-0-UI.s1 /CLONE=UI-R-CA0-bly-e-11-0-UI /FEA=EST /CNT=5 /TID=Rn.63788.1 /TIER=ConsEnd /STK=3 /UG=Rn.63788 /UG_TITLE=ESTs, Highly similar to T17274 hypothetical protein DKFZp434D1335.1 (H.sapiens) BF417956 LSM14A, SCD6 homolog A (S. cerevisiae) Lsm14a 361554 NM_001127552 0033962 // cytoplasmic mRNA processing body assembly // not recorded 0000932 // cytoplasmic mRNA processing body // not recorded /// 0005737 // cytoplasm // not recorded /// 0010494 // stress granule // not recorded 1377906_at BF404389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404389 /DB_XREF=gi:11392364 /DB_XREF=UI-R-CA1-bie-f-06-0-UI.s1 /CLONE=UI-R-CA1-bie-f-06-0-UI /FEA=EST /CNT=5 /TID=Rn.51169.1 /TIER=ConsEnd /STK=3 /UG=Rn.51169 /UG_TITLE=ESTs BF404389 DEAH (Asp-Glu-Ala-His) box polypeptide 36 Dhx36 310461 NM_001107678 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1377907_at BF287924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287924 /DB_XREF=gi:11218994 /DB_XREF=EST452515 /CLONE=RGIGM16 /FEA=EST /CNT=5 /TID=Rn.39699.1 /TIER=ConsEnd /STK=3 /UG=Rn.39699 /UG_TITLE=ESTs BF287924 small nuclear ribonucleoprotein 48k (U11/U12) Snrnp48 291060 NM_001106107 0005689 // U12-type spliceosomal complex // not recorded 1377908_at AI408225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408225 /DB_XREF=gi:4251729 /DB_XREF=EST236515 /CLONE=ROVEM62 /FEA=EST /CNT=5 /TID=Rn.15840.1 /TIER=ConsEnd /STK=3 /UG=Rn.15840 /UG_TITLE=ESTs AI408225 1377909_at BF401445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401445 /DB_XREF=gi:11389420 /DB_XREF=UI-R-CA0-bgt-f-12-0-UI.s1 /CLONE=UI-R-CA0-bgt-f-12-0-UI /FEA=EST /CNT=5 /TID=Rn.20942.1 /TIER=ConsEnd /STK=3 /UG=Rn.20942 /UG_TITLE=ESTs BF401445 1377910_at BF407333 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407333 /DB_XREF=gi:11395308 /DB_XREF=UI-R-BJ2-bqe-f-08-0-UI.s1 /CLONE=UI-R-BJ2-bqe-f-08-0-UI /FEA=EST /CNT=5 /TID=Rn.23334.1 /TIER=ConsEnd /STK=3 /UG=Rn.23334 /UG_TITLE=ESTs BF407333 nucleolar protein NOP58 Nop58 60373 NM_021754 0000154 // rRNA modification // non-traceable author statement /// 0006608 // snRNP protein import into nucleus // inferred from direct assay /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005732 // small nucleolar ribonucleoprotein complex // inferred from direct assay /// 0005732 // small nucleolar ribonucleoprotein complex // not recorded /// 0005732 // small nucleolar ribonucleoprotein complex // inferred from electronic annotation /// 0015030 // Cajal body // inferred from electronic annotation /// 0015030 // Cajal body // not recorded /// 0070761 // pre-snoRNP complex // inferred from electronic annotation /// 0070761 // pre-snoRNP complex // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008649 // rRNA methyltransferase activity // non-traceable author statement /// 0030515 // snoRNA binding // inferred from electronic annotation /// 0030515 // snoRNA binding // not recorded /// 0030519 // snoRNP binding // traceable author statement /// 0051082 // unfolded protein binding // traceable author statement 1377911_at AI029434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029434 /DB_XREF=gi:4298535 /DB_XREF=UI-R-C0-ir-c-04-0-UI.s1 /CLONE=UI-R-C0-ir-c-04-0-UI /FEA=EST /CNT=5 /TID=Rn.18226.1 /TIER=ConsEnd /STK=3 /UG=Rn.18226 /UG_TITLE=ESTs AI029434 Similar to oxysterol-binding protein-like protein 8 isoform a RGD1561474 314824 NM_001108093 0008202 // steroid metabolic process // inferred from electronic annotation 1377912_at AI013104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013104 /DB_XREF=gi:3227160 /DB_XREF=EST207779 /CLONE=RSPBG63 /FEA=EST /CNT=5 /TID=Rn.17964.1 /TIER=ConsEnd /STK=3 /UG=Rn.17964 /UG_TITLE=ESTs AI013104 1377913_at AI598485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598485 /DB_XREF=gi:4607645 /DB_XREF=EST250300 /CLONE=REMDU32 /FEA=EST /CNT=5 /TID=Rn.44136.1 /TIER=ConsEnd /STK=3 /UG=Rn.44136 /UG_TITLE=ESTs AI598485 1377914_at AI059437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059437 /DB_XREF=gi:3333214 /DB_XREF=UI-R-C1-kw-e-12-0-UI.s1 /CLONE=UI-R-C1-kw-e-12-0-UI /FEA=EST /CNT=5 /TID=Rn.19173.1 /TIER=ConsEnd /STK=3 /UG=Rn.19173 /UG_TITLE=ESTs, Weakly similar to T21503 hypothetical protein F28D9.1 - Caenorhabditis elegans (C.elegans) AI059437 serine/arginine repetitive matrix 1 Srrm1 313620 NM_001107986 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005681 // spliceosomal complex // not recorded 0005515 // protein binding // not recorded 1377915_at BE120674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120674 /DB_XREF=gi:8512779 /DB_XREF=UI-R-CA0-bay-c-03-0-UI.s1 /CLONE=UI-R-CA0-bay-c-03-0-UI /FEA=EST /CNT=5 /TID=Rn.23196.1 /TIER=ConsEnd /STK=3 /UG=Rn.23196 /UG_TITLE=ESTs BE120674 1377916_at AW915529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915529 /DB_XREF=gi:8081227 /DB_XREF=EST346833 /CLONE=RGICW42 /FEA=EST /CNT=5 /TID=Rn.34404.1 /TIER=ConsEnd /STK=3 /UG=Rn.34404 /UG_TITLE=ESTs AW915529 schlafen 2 Slfn2 303380 NM_001107031 0008285 // negative regulation of cell proliferation // not recorded 0005524 // ATP binding // inferred from electronic annotation 1377917_at AI104595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104595 /DB_XREF=gi:3708928 /DB_XREF=EST213884 /CLONE=RHECF77 /FEA=EST /CNT=5 /TID=Rn.22974.1 /TIER=ConsEnd /STK=3 /UG=Rn.22974 /UG_TITLE=ESTs AI104595 1377918_at AW526291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526291 /DB_XREF=gi:7168676 /DB_XREF=UI-R-BO1-aja-d-01-0-UI.s1 /CLONE=UI-R-BO1-aja-d-01-0-UI /FEA=EST /CNT=5 /TID=Rn.28447.1 /TIER=ConsEnd /STK=3 /UG=Rn.28447 /UG_TITLE=ESTs AW526291 Stomatin-like 1 Stoml1 300748 XM_001074725 /// XM_236297 0016020 // membrane // inferred from electronic annotation 0032934 // sterol binding // inferred from electronic annotation 1377919_at AW530607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530607 /DB_XREF=gi:7173021 /DB_XREF=UI-R-C4-ala-c-03-0-UI.s1 /CLONE=UI-R-C4-ala-c-03-0-UI /FEA=EST /CNT=5 /TID=Rn.34115.1 /TIER=ConsEnd /STK=3 /UG=Rn.34115 /UG_TITLE=ESTs, Weakly similar to T25862 hypothetical protein T04C9.1 - Caenorhabditis elegans (C.elegans) AW530607 Rho GTPase activating protein 10 Arhgap10 688429 NM_001109501 0007010 // cytoskeleton organization // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0046847 // filopodium assembly // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005100 // Rho GTPase activator activity // not recorded /// 0008093 // cytoskeletal adaptor activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation 1377920_at AI413026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI413026 /DB_XREF=gi:4256530 /DB_XREF=EST241327 /CLONE=RBRDZ38 /FEA=EST /CNT=5 /TID=Rn.45015.1 /TIER=ConsEnd /STK=3 /UG=Rn.45015 /UG_TITLE=ESTs, Weakly similar to small glutamine-rich tetratricopeptide repeat (TPR) containing protein (SGT) (Rattus norvegicus) (R.norvegicus) AI413026 Small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta Sgtb 294708 NM_181629 0006457 // protein folding // traceable author statement 0005488 // binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // traceable author statement /// 0030544 // Hsp70 protein binding // traceable author statement /// 0051087 // chaperone binding // traceable author statement 1377921_at AA875050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875050 /DB_XREF=gi:4230931 /DB_XREF=UI-R-E0-cb-d-05-0-UI.s1 /CLONE=UI-R-E0-cb-d-05-0-UI /FEA=EST /CNT=5 /TID=Rn.65516.1 /TIER=ConsEnd /STK=3 /UG=Rn.65516 /UG_TITLE=ESTs, Weakly similar to KICE RAT CHOLINEETHANOLAMINE KINASE (R.norvegicus) AA875050 ethanolamine kinase 2 Etnk2 360843 NM_001108343 0001701 // in utero embryonic development // not recorded /// 0001890 // placenta development // not recorded /// 0006646 // phosphatidylethanolamine biosynthetic process // not recorded /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0035264 // multicellular organism growth // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1377922_at BE111094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111094 /DB_XREF=gi:8503199 /DB_XREF=UI-R-BJ1-auz-e-11-0-UI.s1 /CLONE=UI-R-BJ1-auz-e-11-0-UI /FEA=EST /CNT=5 /TID=Rn.23551.1 /TIER=ConsEnd /STK=3 /UG=Rn.23551 /UG_TITLE=ESTs BE111094 Zinc finger protein 507 Znf507 292816 NM_001106248 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1377923_at AA892818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892818 /DB_XREF=gi:3019697 /DB_XREF=EST196621 /CLONE=RKIAX63 /FEA=EST /CNT=5 /TID=Rn.14795.1 /TIER=ConsEnd /STK=3 /UG=Rn.14795 /UG_TITLE=ESTs AA892818 StAR-related lipid transfer (START) domain containing 8 Stard8 312113 NM_001107849 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 1377924_at BE113414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113414 /DB_XREF=gi:8505519 /DB_XREF=UI-R-BJ1-awl-a-10-0-UI.s1 /CLONE=UI-R-BJ1-awl-a-10-0-UI /FEA=EST /CNT=5 /TID=Rn.3309.2 /TIER=ConsEnd /STK=3 /UG=Rn.3309 /UG_TITLE=ESTs BE113414 1377925_at BE105762 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105762 /DB_XREF=gi:8497828 /DB_XREF=UI-R-BO1-asi-c-12-0-UI.s1 /CLONE=UI-R-BO1-asi-c-12-0-UI /FEA=EST /CNT=5 /TID=Rn.35414.1 /TIER=ConsEnd /STK=3 /UG=Rn.35414 /UG_TITLE=ESTs BE105762 1377926_at AA924061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924061 /DB_XREF=gi:4234153 /DB_XREF=UI-R-A1-du-e-06-0-UI.s1 /CLONE=UI-R-A1-du-e-06-0-UI /FEA=EST /CNT=5 /TID=Rn.25493.1 /TIER=ConsEnd /STK=3 /UG=Rn.25493 /UG_TITLE=ESTs AA924061 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 Agap1 316611 NM_001108230 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005525 // GTP binding // inferred from electronic annotation /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1377927_at AI228258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228258 /DB_XREF=gi:3812145 /DB_XREF=EST224953 /CLONE=RBRCS49 /FEA=EST /CNT=5 /TID=Rn.20095.1 /TIER=ConsEnd /STK=3 /UG=Rn.20095 /UG_TITLE=ESTs AI228258 1377928_at BM385993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385993 /DB_XREF=gi:18186046 /DB_XREF=UI-R-DN1-ckg-o-16-0-UI.s1 /CLONE=UI-R-DN1-ckg-o-16-0-UI /FEA=EST /CNT=5 /TID=Rn.6345.1 /TIER=ConsEnd /STK=3 /UG=Rn.6345 /UG_TITLE=ESTs, Weakly similar to T4S1_HUMAN TRANSMEMBRANE 4 SUPERFAMILY, MEMBER 1 (H.sapiens) BM385993 transmembrane 4 L six family member 20 Tm4sf20 691066 NM_001109618 0016021 // integral to membrane // inferred from electronic annotation 1377929_at BF550844 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550844 /DB_XREF=gi:11660574 /DB_XREF=UI-R-C1-jw-h-10-0-UI.r1 /CLONE=UI-R-C1-jw-h-10-0-UI /FEA=EST /CNT=5 /TID=Rn.15929.1 /TIER=ConsEnd /STK=3 /UG=Rn.15929 /UG_TITLE=ESTs BF550844 1377930_at AW531056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531056 /DB_XREF=gi:7173470 /DB_XREF=UI-R-C4-alg-b-06-0-UI.s1 /CLONE=UI-R-C4-alg-b-06-0-UI /FEA=EST /CNT=5 /TID=Rn.47621.1 /TIER=ConsEnd /STK=3 /UG=Rn.47621 /UG_TITLE=ESTs, Weakly similar to IPP_MOUSE Actin-binding protein IPP (MIPP protein) (Murine IAP-promoted placenta-expressed protein) (M.musculus) AW531056 Kelch repeat and BTB (POZ) domain containing 7 Kbtbd7 306073 NM_001012045 0005515 // protein binding // inferred from electronic annotation 1377931_at BF523850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523850 /DB_XREF=gi:11631817 /DB_XREF=UI-R-Y0-acg-g-11-0-UI.r1 /CLONE=UI-R-Y0-acg-g-11-0-UI /FEA=EST /CNT=5 /TID=Rn.41030.1 /TIER=ConsEnd /STK=3 /UG=Rn.41030 /UG_TITLE=ESTs BF523850 1377932_at AI556063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556063 /DB_XREF=gi:4488426 /DB_XREF=UI-R-C2p-re-f-09-0-UI.s1 /CLONE=UI-R-C2p-re-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.15689.1 /TIER=ConsEnd /STK=3 /UG=Rn.15689 /UG_TITLE=ESTs AI556063 1377933_at BI282635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282635 /DB_XREF=gi:14933600 /DB_XREF=UI-R-CW0s-ccd-d-01-0-UI.s1 /CLONE=UI-R-CW0s-ccd-d-01-0-UI /FEA=EST /CNT=5 /TID=Rn.52192.1 /TIER=ConsEnd /STK=3 /UG=Rn.52192 /UG_TITLE=ESTs, Weakly similar to F55F8.9.p (Caenorhabditis elegans) (C.elegans) BI282635 solute carrier family 39 (zinc transporter), member 3 Slc39a3 314637 NM_001008356 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006829 // zinc ion transport // inferred from electronic annotation /// 0006829 // zinc ion transport // not recorded /// 0015674 // di-, tri-valent inorganic cation transport // not recorded /// 0030001 // metal ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0071577 // zinc ion transmembrane transport // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005385 // zinc ion transmembrane transporter activity // inferred from electronic annotation /// 0005385 // zinc ion transmembrane transporter activity // not recorded /// 0046873 // metal ion transmembrane transporter activity // inferred from electronic annotation 1377934_at BF387289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387289 /DB_XREF=gi:11372113 /DB_XREF=UI-R-CA1-bbl-g-04-0-UI.s1 /CLONE=UI-R-CA1-bbl-g-04-0-UI /FEA=EST /CNT=5 /TID=Rn.17683.1 /TIER=ConsEnd /STK=3 /UG=Rn.17683 /UG_TITLE=ESTs, Moderately similar to I48341 endoglin - mouse (M.musculus) BF387289 1377935_at AI231223 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231223 /DB_XREF=gi:3815103 /DB_XREF=EST227911 /CLONE=REMDH34 /FEA=EST /CNT=5 /TID=Rn.21502.2 /TIER=ConsEnd /STK=3 /UG=Rn.21502 /UG_TITLE=ESTs, Moderately similar to T12481 hypothetical protein DKFZp564P0462.1 (H.sapiens) AI231223 Claudin domain containing 1 Cldnd1 288182 NM_001006955 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1377936_at AI008241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008241 /DB_XREF=gi:4132872 /DB_XREF=EST202692 /CLONE=REMAU84 /FEA=EST /CNT=5 /TID=Rn.15853.1 /TIER=ConsEnd /STK=3 /UG=Rn.15853 /UG_TITLE=ESTs, Weakly similar to BCR_ECOLI BICYCLOMYCIN RESISTANCE PROTEIN (SULFONAMIDE RESISTANCE PROTEIN) (E.coli) AI008241 1377937_at AA859719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859719 /DB_XREF=gi:4230263 /DB_XREF=UI-R-E0-bx-h-06-0-UI.s1 /CLONE=UI-R-E0-bx-h-06-0-UI /FEA=EST /CNT=5 /TID=Rn.67.1 /TIER=ConsEnd /STK=3 /UG=Rn.67 /UG_TITLE=ESTs AA859719 mitochondrial ribosomal protein S14 Mrps14 289143 NM_001105963 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1377938_at AA859585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859585 /DB_XREF=gi:4230131 /DB_XREF=UI-R-E0-bv-d-05-0-UI.s1 /CLONE=UI-R-E0-bv-d-05-0-UI /FEA=EST /CNT=5 /TID=Rn.24950.1 /TIER=ConsEnd /STK=3 /UG=Rn.24950 /UG_TITLE=ESTs AA859585 family with sequence similarity 100, member A Fam100a 302941 NM_001007668 1377939_at AW527217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527217 /DB_XREF=gi:7169631 /DB_XREF=UI-R-BO1-ajm-g-11-0-UI.s1 /CLONE=UI-R-BO1-ajm-g-11-0-UI /FEA=EST /CNT=5 /TID=Rn.23378.1 /TIER=ConsEnd /STK=3 /UG=Rn.23378 /UG_TITLE=ESTs AW527217 ATG4 autophagy related 4 homolog C (S. cerevisiae) Atg4c 313391 NM_001107948 0000045 // autophagic vacuole assembly // not recorded /// 0006508 // proteolysis // not recorded /// 0006914 // autophagy // not recorded 0005576 // extracellular region // not recorded 0004197 // cysteine-type endopeptidase activity // not recorded /// 0008233 // peptidase activity // not recorded 1377940_at BF398271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398271 /DB_XREF=gi:11383260 /DB_XREF=UI-R-BS2-bfb-e-09-0-UI.s1 /CLONE=UI-R-BS2-bfb-e-09-0-UI /FEA=EST /CNT=5 /TID=Rn.16220.1 /TIER=ConsEnd /STK=3 /UG=Rn.16220 /UG_TITLE=ESTs BF398271 family with sequence similarity 101, member B Fam101b 287534 NM_001007611 1377941_at BF417974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417974 /DB_XREF=gi:11406003 /DB_XREF=UI-R-CA1-blv-d-09-0-UI.s1 /CLONE=UI-R-CA1-blv-d-09-0-UI /FEA=EST /CNT=5 /TID=Rn.63327.1 /TIER=ConsEnd /STK=3 /UG=Rn.63327 /UG_TITLE=ESTs BF417974 1377942_at AI101595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101595 /DB_XREF=gi:3706474 /DB_XREF=EST210884 /CLONE=RBRBS69 /FEA=EST /CNT=5 /TID=Rn.28084.1 /TIER=ConsEnd /STK=3 /UG=Rn.28084 /UG_TITLE=ESTs AI101595 1377943_at BI292219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292219 /DB_XREF=gi:14952500 /DB_XREF=UI-R-DN0-civ-o-05-0-UI.s1 /CLONE=UI-R-DN0-civ-o-05-0-UI /FEA=EST /CNT=5 /TID=Rn.6734.1 /TIER=ConsEnd /STK=3 /UG=Rn.6734 /UG_TITLE=ESTs BI292219 CD86 molecule Cd86 56822 NM_020081 0001878 // response to yeast // inferred from expression pattern /// 0002224 // toll-like receptor signaling pathway // not recorded /// 0002224 // toll-like receptor signaling pathway // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0034341 // response to interferon-gamma // inferred from expression pattern /// 0042098 // T cell proliferation // inferred from direct assay /// 0042110 // T cell activation // inferred from direct assay /// 0042113 // B cell activation // not recorded /// 0042113 // B cell activation // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1377944_at AW532214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532214 /DB_XREF=gi:7174628 /DB_XREF=UI-R-C4-alj-g-04-0-UI.s1 /CLONE=UI-R-C4-alj-g-04-0-UI /FEA=EST /CNT=5 /TID=Rn.28251.1 /TIER=ConsEnd /STK=3 /UG=Rn.28251 /UG_TITLE=ESTs AW532214 1377945_at AI111512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111512 /DB_XREF=gi:3511554 /DB_XREF=UI-R-Y0-ma-b-09-0-UI.s1 /CLONE=UI-R-Y0-ma-b-09-0-UI /FEA=EST /CNT=5 /TID=Rn.26598.1 /TIER=ConsEnd /STK=3 /UG=Rn.26598 /UG_TITLE=ESTs, Highly similar to S71758 DEAD box protein MrDb, Myc-regulated (H.sapiens) AI111512 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 Ddx18 308490 NM_001006996 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1377946_at BF420043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420043 /DB_XREF=gi:11408032 /DB_XREF=UI-R-BJ2-bpm-c-09-0-UI.s1 /CLONE=UI-R-BJ2-bpm-c-09-0-UI /FEA=EST /CNT=5 /TID=Rn.23377.1 /TIER=ConsEnd /STK=3 /UG=Rn.23377 /UG_TITLE=ESTs BF420043 1377947_at BE103937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103937 /DB_XREF=gi:8496037 /DB_XREF=UI-R-BX0-arj-f-08-0-UI.s1 /CLONE=UI-R-BX0-arj-f-08-0-UI /FEA=EST /CNT=5 /TID=Rn.48848.1 /TIER=ConsEnd /STK=3 /UG=Rn.48848 /UG_TITLE=ESTs BE103937 1377948_at AI547855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547855 /DB_XREF=gi:4465343 /DB_XREF=UI-R-C3-sk-g-03-0-UI.s1 /CLONE=UI-R-C3-sk-g-03-0-UI /FEA=EST /CNT=5 /TID=Rn.21999.1 /TIER=ConsEnd /STK=3 /UG=Rn.21999 /UG_TITLE=ESTs, Weakly similar to S44843 K06H7.3 protein - Caenorhabditis elegans (C.elegans) AI547855 ankyrin repeat and zinc finger domain containing 1 Ankzf1 363255 NM_001014219 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377949_s_at AA899043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899043 /DB_XREF=gi:4231543 /DB_XREF=UI-R-E0-bz-a-07-0-UI.s2 /CLONE=UI-R-E0-bz-a-07-0-UI /FEA=EST /CNT=5 /TID=Rn.49658.1 /TIER=ConsEnd /STK=3 /UG=Rn.49658 /UG_TITLE=ESTs AA899043 ankyrin repeat and sterile alpha motif domain containing 1A Anks1a 309639 NM_001107613 0005515 // protein binding // not recorded 1377950_at AA955213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955213 /DB_XREF=gi:4237575 /DB_XREF=UI-R-A1-ej-e-06-0-UI.s1 /CLONE=UI-R-A1-ej-e-06-0-UI /FEA=EST /CNT=5 /TID=Rn.7743.1 /TIER=ConsEnd /STK=3 /UG=Rn.7743 /UG_TITLE=ESTs AA955213 similar to interferon-inducible GTPase RGD1309362 307415 NM_001024884 0016020 // membrane // inferred from electronic annotation 0005525 // GTP binding // inferred from electronic annotation /// 0016817 // hydrolase activity, acting on acid anhydrides // inferred from electronic annotation 1377951_at AA964993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964993 /DB_XREF=gi:4279867 /DB_XREF=UI-R-C0-gr-e-11-0-UI.s1 /CLONE=UI-R-C0-gr-e-11-0-UI /FEA=EST /CNT=5 /TID=Rn.22090.1 /TIER=ConsEnd /STK=3 /UG=Rn.22090 /UG_TITLE=ESTs AA964993 1377952_at BE102146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102146 /DB_XREF=gi:8494245 /DB_XREF=UI-R-BT1-aqj-h-09-0-UI.s1 /CLONE=UI-R-BT1-aqj-h-09-0-UI /FEA=EST /CNT=5 /TID=Rn.50214.1 /TIER=ConsEnd /STK=3 /UG=Rn.50214 /UG_TITLE=ESTs BE102146 ADP-dependent glucokinase Adpgk 315722 NM_001100723 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1377953_at AI500841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI500841 /DB_XREF=gi:4398692 /DB_XREF=UI-R-C2p-rq-h-04-0-UI.s1 /CLONE=UI-R-C2p-rq-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.22393.1 /TIER=ConsEnd /STK=3 /UG=Rn.22393 /UG_TITLE=ESTs, Weakly similar to I48678 nebulin - mouse (M.musculus) AI500841 1377954_at AA900691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900691 /DB_XREF=gi:4233186 /DB_XREF=UI-R-E0-by-e-08-0-UI.s4 /CLONE=UI-R-E0-by-e-08-0-UI /FEA=EST /CNT=5 /TID=Rn.15097.1 /TIER=ConsEnd /STK=3 /UG=Rn.15097 /UG_TITLE=ESTs AA900691 1377955_at AI137602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137602 /DB_XREF=gi:3638379 /DB_XREF=UI-R-C0-ho-g-01-0-UI.s1 /CLONE=UI-R-C0-ho-g-01-0-UI /FEA=EST /CNT=5 /TID=Rn.18207.1 /TIER=ConsEnd /STK=3 /UG=Rn.18207 /UG_TITLE=ESTs AI137602 ORAI calcium release-activated calcium modulator 2 Orai2 304592 NM_001170403 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1377956_at AI548035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548035 /DB_XREF=gi:4465523 /DB_XREF=UI-R-C3-tc-g-04-0-UI.s1 /CLONE=UI-R-C3-tc-g-04-0-UI /FEA=EST /CNT=5 /TID=Rn.34691.1 /TIER=ConsEnd /STK=3 /UG=Rn.34691 /UG_TITLE=ESTs AI548035 1377957_at AI716128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716128 /DB_XREF=gi:5033339 /DB_XREF=UI-R-Y0-acd-g-12-0-UI.s1 /CLONE=UI-R-Y0-acd-g-12-0-UI /FEA=EST /CNT=5 /TID=Rn.40749.1 /TIER=ConsEnd /STK=3 /UG=Rn.40749 /UG_TITLE=ESTs AI716128 1377958_at AW530282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530282 /DB_XREF=gi:7172696 /DB_XREF=UI-R-BU0-amu-g-08-0-UI.s1 /CLONE=UI-R-BU0-amu-g-08-0-UI /FEA=EST /CNT=5 /TID=Rn.45012.1 /TIER=ConsEnd /STK=3 /UG=Rn.45012 /UG_TITLE=ESTs, Weakly similar to T21393 hypothetical protein F26D10.11 - Caenorhabditis elegans (C.elegans) AW530282 lipoma HMGIC fusion partner-like 4 Lhfpl4 353230 NM_181387 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1377959_at BF397523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397523 /DB_XREF=gi:11382506 /DB_XREF=UI-R-BS2-bez-e-01-0-UI.s1 /CLONE=UI-R-BS2-bez-e-01-0-UI /FEA=EST /CNT=5 /TID=Rn.14613.1 /TIER=ConsEnd /STK=3 /UG=Rn.14613 /UG_TITLE=ESTs, Highly similar to T08783 hypothetical protein DKFZp586O0120.1 (H.sapiens) BF397523 family with sequence similarity 32, member A Fam32a 498600 NM_001128078 0005730 // nucleolus // not recorded 1377960_at BF407455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407455 /DB_XREF=gi:11395430 /DB_XREF=UI-R-BJ2-bqs-d-11-0-UI.s1 /CLONE=UI-R-BJ2-bqs-d-11-0-UI /FEA=EST /CNT=5 /TID=Rn.38402.1 /TIER=ConsEnd /STK=3 /UG=Rn.38402 /UG_TITLE=ESTs BF407455 1377961_at AI072467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072467 /DB_XREF=gi:3398661 /DB_XREF=UI-R-C2-nm-a-02-0-UI.s1 /CLONE=UI-R-C2-nm-a-02-0-UI /FEA=EST /CNT=5 /TID=Rn.23534.1 /TIER=ConsEnd /STK=3 /UG=Rn.23534 /UG_TITLE=ESTs, Highly similar to AT motif-binding factor (M.musculus) AI072467 zinc finger homeobox 3 Zfhx3 307829 XM_001076847 /// XM_002728613 /// XM_226464 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from expression pattern /// 0007420 // brain development // inferred from expression pattern /// 0045662 // negative regulation of myoblast differentiation // not recorded /// 0045663 // positive regulation of myoblast differentiation // not recorded /// 0045664 // regulation of neuron differentiation // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0019899 // enzyme binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1377962_at AI549424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549424 /DB_XREF=gi:4466912 /DB_XREF=UI-R-C3-ua-f-08-0-UI.s1 /CLONE=UI-R-C3-ua-f-08-0-UI /FEA=EST /CNT=5 /TID=Rn.43348.1 /TIER=ConsEnd /STK=3 /UG=Rn.43348 /UG_TITLE=ESTs AI549424 myeloblastosis oncogene-like 2 Mybl2 296344 NM_001106536 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation 1377963_at AW526938 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526938 /DB_XREF=gi:7169352 /DB_XREF=UI-R-BO1-ajf-g-04-0-UI.s1 /CLONE=UI-R-BO1-ajf-g-04-0-UI /FEA=EST /CNT=5 /TID=Rn.25440.1 /TIER=ConsEnd /STK=3 /UG=Rn.25440 /UG_TITLE=ESTs AW526938 1377964_at BM390539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390539 /DB_XREF=gi:18190592 /DB_XREF=UI-R-CN1-cjr-c-19-0-UI.s1 /CLONE=UI-R-CN1-cjr-c-19-0-UI /FEA=EST /CNT=5 /TID=Rn.17974.1 /TIER=ConsEnd /STK=3 /UG=Rn.17974 /UG_TITLE=ESTs BM390539 transmembrane protein 167B-like LOC100363708 100363708 XM_002725828 1377965_at BE114146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114146 /DB_XREF=gi:8506251 /DB_XREF=UI-R-BJ1-awj-f-05-0-UI.s1 /CLONE=UI-R-BJ1-awj-f-05-0-UI /FEA=EST /CNT=5 /TID=Rn.23451.1 /TIER=ConsEnd /STK=3 /UG=Rn.23451 /UG_TITLE=ESTs BE114146 Ras interacting protein 1 Rasip1 292912 NM_001106261 0007165 // signal transduction // inferred from electronic annotation 1377966_at BI275560 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275560 /DB_XREF=gi:14919591 /DB_XREF=UI-R-CX0-bwy-g-08-0-UI.s1 /CLONE=UI-R-CX0-bwy-g-08-0-UI /FEA=EST /CNT=5 /TID=Rn.22923.1 /TIER=ConsEnd /STK=3 /UG=Rn.22923 /UG_TITLE=ESTs BI275560 1377967_at AI112987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112987 /DB_XREF=gi:3512936 /DB_XREF=UI-R-E1-go-e-06-0-UI.s1 /CLONE=UI-R-E1-go-e-06-0-UI /FEA=EST /CNT=5 /TID=Rn.8884.1 /TIER=ConsEnd /STK=3 /UG=Rn.8884 /UG_TITLE=ESTs AI112987 chromatin licensing and DNA replication factor 1 Cdt1 292071 NM_001106192 0000076 // DNA replication checkpoint // not recorded /// 0007090 // regulation of S phase of mitotic cell cycle // not recorded /// 0030174 // regulation of DNA-dependent DNA replication initiation // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded 1377968_at AI069912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI069912 /DB_XREF=gi:3396115 /DB_XREF=UI-R-C1-ln-c-02-0-UI.s1 /CLONE=UI-R-C1-ln-c-02-0-UI /FEA=EST /CNT=5 /TID=Rn.13003.1 /TIER=ConsEnd /STK=3 /UG=Rn.13003 /UG_TITLE=ESTs AI069912 1377969_at AI502538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502538 /DB_XREF=gi:4400389 /DB_XREF=UI-R-C2-nf-d-05-0-UI.s1 /CLONE=UI-R-C2-nf-d-05-0-UI /FEA=EST /CNT=5 /TID=Rn.35437.1 /TIER=ConsEnd /STK=3 /UG=Rn.35437 /UG_TITLE=ESTs AI502538 1377970_at BE105494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105494 /DB_XREF=gi:8497596 /DB_XREF=UI-R-BX0-arv-d-10-0-UI.s1 /CLONE=UI-R-BX0-arv-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.7889.1 /TIER=ConsEnd /STK=3 /UG=Rn.7889 /UG_TITLE=ESTs, Moderately similar to T34522 hypothetical protein DKFZp566D244.1 (H.sapiens) BE105494 poly (ADP-ribose) polymerase family, member 8 Parp8 294762 XM_001068789 /// XM_215491 0005622 // intracellular // not recorded 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from electronic annotation 1377971_at BG378771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378771 /DB_XREF=gi:13303243 /DB_XREF=UI-R-CV1-bvs-f-07-0-UI.s1 /CLONE=UI-R-CV1-bvs-f-07-0-UI /FEA=EST /CNT=5 /TID=Rn.13342.1 /TIER=ConsEnd /STK=3 /UG=Rn.13342 /UG_TITLE=ESTs BG378771 1377972_at BF402035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402035 /DB_XREF=gi:11390010 /DB_XREF=UI-R-CA1-bim-b-05-0-UI.s1 /CLONE=UI-R-CA1-bim-b-05-0-UI /FEA=EST /CNT=5 /TID=Rn.24357.1 /TIER=ConsEnd /STK=3 /UG=Rn.24357 /UG_TITLE=ESTs BF402035 microtubule associated serine/threonine kinase family member 4 Mast4 310040 XM_001063274 /// XM_226732 0006468 // protein phosphorylation // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1377973_at BF402062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402062 /DB_XREF=gi:11390037 /DB_XREF=UI-R-CA1-bim-d-11-0-UI.s1 /CLONE=UI-R-CA1-bim-d-11-0-UI /FEA=EST /CNT=5 /TID=Rn.59960.1 /TIER=ConsEnd /STK=3 /UG=Rn.59960 /UG_TITLE=ESTs BF402062 1377974_at AI502837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502837 /DB_XREF=gi:4400688 /DB_XREF=UI-R-BT0-pl-e-03-0-UI.s1 /CLONE=UI-R-BT0-pl-e-03-0-UI /FEA=EST /CNT=5 /TID=Rn.24711.1 /TIER=ConsEnd /STK=3 /UG=Rn.24711 /UG_TITLE=ESTs AI502837 1377975_at AI100827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI100827 /DB_XREF=gi:3704523 /DB_XREF=EST210116 /CLONE=RBRBB29 /FEA=EST /CNT=5 /TID=Rn.27931.1 /TIER=ConsEnd /STK=3 /UG=Rn.27931 /UG_TITLE=ESTs AI100827 1377976_at AI137539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137539 /DB_XREF=gi:3638316 /DB_XREF=UI-R-C2p-oc-f-10-0-UI.s1 /CLONE=UI-R-C2p-oc-f-10-0-UI /FEA=EST /CNT=5 /TID=Rn.23392.1 /TIER=ConsEnd /STK=3 /UG=Rn.23392 /UG_TITLE=ESTs AI137539 1377977_at AW534423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534423 /DB_XREF=gi:7176837 /DB_XREF=UI-R-C4-aln-d-07-0-UI.s1 /CLONE=UI-R-C4-aln-d-07-0-UI /FEA=EST /CNT=5 /TID=Rn.47878.1 /TIER=ConsEnd /STK=3 /UG=Rn.47878 /UG_TITLE=ESTs, Weakly similar to A Chain A, Human Vh1-Related Dual-Specificity Phosphatase C124s Mutant- Peptide Complex (H.sapiens) AW534423 dual specificity phosphatase 13 Dusp13 361002 NM_001007006 /// NM_001162408 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0005737 // cytoplasm // not recorded 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1377978_at BF407904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407904 /DB_XREF=gi:11395879 /DB_XREF=UI-R-C3-sx-c-09-0-UI.s2 /CLONE=UI-R-C3-sx-c-09-0-UI /FEA=EST /CNT=5 /TID=Rn.38857.1 /TIER=ConsEnd /STK=3 /UG=Rn.38857 /UG_TITLE=ESTs BF407904 similar to RIKEN cDNA 2310057N15 RGD1562771 501767 XM_001071507 /// XM_577167 1377979_at AW434228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434228 /DB_XREF=gi:6965535 /DB_XREF=UI-R-BJ0p-aft-g-02-0-UI.s1 /CLONE=UI-R-BJ0p-aft-g-02-0-UI /FEA=EST /CNT=5 /TID=Rn.6250.1 /TIER=ConsEnd /STK=3 /UG=Rn.6250 /UG_TITLE=ESTs AW434228 1377980_at AI549077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549077 /DB_XREF=gi:4466565 /DB_XREF=UI-R-C3-tq-c-08-0-UI.s1 /CLONE=UI-R-C3-tq-c-08-0-UI /FEA=EST /CNT=5 /TID=Rn.38631.1 /TIER=ConsEnd /STK=3 /UG=Rn.38631 /UG_TITLE=ESTs AI549077 gene model 691, (NCBI)-like LOC100364559 100364559 XM_002726287 1377981_at AI408065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408065 /DB_XREF=gi:4251569 /DB_XREF=EST236355 /CLONE=RPLDM12 /FEA=EST /CNT=5 /TID=Rn.44172.1 /TIER=ConsEnd /STK=3 /UG=Rn.44172 /UG_TITLE=ESTs AI408065 Coiled-coil domain containing 109A Ccdc109a 294560 NM_001106398 0005739 // mitochondrion // not recorded 1377982_at AW915930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915930 /DB_XREF=gi:8081642 /DB_XREF=EST347234 /CLONE=RGIDC76 /FEA=EST /CNT=5 /TID=Rn.23314.1 /TIER=ConsEnd /STK=3 /UG=Rn.23314 /UG_TITLE=ESTs, Weakly similar to S47857 basic protein, cytosolic - fruit fly (D.melanogaster) AW915930 deltex homolog 4 (Drosophila) Dtx4 293774 NM_001047855 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1377983_at AA924175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924175 /DB_XREF=gi:4234315 /DB_XREF=UI-R-E0-bp-c-02-0-UI.s3 /CLONE=UI-R-E0-bp-c-02-0-UI /FEA=EST /CNT=5 /TID=Rn.4103.1 /TIER=ConsEnd /STK=3 /UG=Rn.4103 /UG_TITLE=ESTs, Highly similar to I49257 NF2d9 - mouse (M.musculus) AA924175 Upstream binding protein 1 (LBP-1a) Ubp1 301038 NM_001191819 /// XM_001076644 /// XM_002727141 /// XM_002729971 /// XM_238562 0001525 // angiogenesis // not recorded 1377984_at AI102896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102896 /DB_XREF=gi:3707538 /DB_XREF=EST212185 /CLONE=REMBU42 /FEA=EST /CNT=5 /TID=Rn.22498.1 /TIER=ConsEnd /STK=3 /UG=Rn.22498 /UG_TITLE=ESTs AI102896 inositol 1,4,5-trisphosphate 3-kinase B Itpkb 54260 NM_019312 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000165 // MAPKKK cascade // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0016310 // phosphorylation // not recorded /// 0030217 // T cell differentiation // inferred from electronic annotation /// 0030217 // T cell differentiation // not recorded /// 0045059 // positive thymic T cell selection // inferred from electronic annotation /// 0045059 // positive thymic T cell selection // not recorded /// 0045061 // thymic T cell selection // not recorded /// 0045061 // thymic T cell selection // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0046638 // positive regulation of alpha-beta T cell differentiation // inferred from electronic annotation /// 0046638 // positive regulation of alpha-beta T cell differentiation // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008440 // inositol trisphosphate 3-kinase activity // inferred from electronic annotation /// 0008440 // inositol trisphosphate 3-kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1377985_at BE120398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120398 /DB_XREF=gi:8512503 /DB_XREF=UI-R-CA0-baq-h-10-0-UI.s1 /CLONE=UI-R-CA0-baq-h-10-0-UI /FEA=EST /CNT=5 /TID=Rn.45000.1 /TIER=ConsEnd /STK=3 /UG=Rn.45000 /UG_TITLE=ESTs BE120398 Similar to U5 snRNP-specific protein (Prp8-binding) RGD1309198 313056 NM_001134556 0008380 // RNA splicing // not recorded 0005515 // protein binding // not recorded 1377986_at AI029749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029749 /DB_XREF=gi:4300707 /DB_XREF=UI-R-C0-jg-f-05-0-UI.s1 /CLONE=UI-R-C0-jg-f-05-0-UI /FEA=EST /CNT=5 /TID=Rn.18315.1 /TIER=ConsEnd /STK=3 /UG=Rn.18315 /UG_TITLE=ESTs, Moderately similar to T24634 hypothetical protein T07C4.10b - Caenorhabditis elegans (C.elegans) AI029749 short coiled-coil protein Scoc 364981 NM_001013235 0005634 // nucleus // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation 0005515 // protein binding // not recorded 1377987_at BI281852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281852 /DB_XREF=gi:14932017 /DB_XREF=UI-R-CU0s-cbt-c-10-0-UI.s1 /CLONE=UI-R-CU0s-cbt-c-10-0-UI /FEA=EST /CNT=5 /TID=Rn.44973.1 /TIER=ConsEnd /STK=3 /UG=Rn.44973 /UG_TITLE=ESTs BI281852 trafficking protein particle complex 5 Trappc5 363858 NM_001108850 0006182 // cGMP biosynthetic process // inferred from electronic annotation 0030008 // TRAPP complex // inferred from electronic annotation /// 0030008 // TRAPP complex // not recorded 0004383 // guanylate cyclase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0020037 // heme binding // inferred from electronic annotation 1377988_at AI060321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060321 /DB_XREF=gi:3334098 /DB_XREF=UI-R-C1-lm-h-09-0-UI.s1 /CLONE=UI-R-C1-lm-h-09-0-UI /FEA=EST /CNT=5 /TID=Rn.9327.1 /TIER=ConsEnd /STK=3 /UG=Rn.9327 /UG_TITLE=ESTs, Weakly similar to T28795 hypothetical protein C16E9.2a - Caenorhabditis elegans (C.elegans) AI060321 Similar to CG9646-PA RGD1304694 362974 XM_001078167 /// XM_343304 0005515 // protein binding // not recorded 1377989_at AI229496 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229496 /DB_XREF=gi:3813383 /DB_XREF=EST226191 /CLONE=REMCH26 /FEA=EST /CNT=5 /TID=Rn.22404.1 /TIER=ConsEnd /STK=3 /UG=Rn.22404 /UG_TITLE=ESTs AI229496 1377990_at BF396815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396815 /DB_XREF=gi:11381796 /DB_XREF=UI-R-BS2-bev-d-12-0-UI.s1 /CLONE=UI-R-BS2-bev-d-12-0-UI /FEA=EST /CNT=5 /TID=Rn.41837.1 /TIER=ConsEnd /STK=3 /UG=Rn.41837 /UG_TITLE=ESTs BF396815 similar to EMSY protein RGD1310712 361607 XR_085723 /// XR_086129 1377991_at BG376644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376644 /DB_XREF=gi:13301116 /DB_XREF=UI-R-CU0-buq-b-02-0-UI.s1 /CLONE=UI-R-CU0-buq-b-02-0-UI /FEA=EST /CNT=5 /TID=Rn.39279.1 /TIER=ConsEnd /STK=3 /UG=Rn.39279 /UG_TITLE=ESTs BG376644 round spermatid basic protein 1-like Rsbn1l 311987 NM_001135872 1377992_at AI111775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111775 /DB_XREF=gi:3511724 /DB_XREF=UI-R-Y0-me-g-06-0-UI.s1 /CLONE=UI-R-Y0-me-g-06-0-UI /FEA=EST /CNT=5 /TID=Rn.26636.1 /TIER=ConsEnd /STK=3 /UG=Rn.26636 /UG_TITLE=ESTs AI111775 1377993_at AI454466 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454466 /DB_XREF=gi:4293923 /DB_XREF=UI-R-C2p-qo-g-03-0-UI.s1 /CLONE=UI-R-C2p-qo-g-03-0-UI /FEA=EST /CNT=5 /TID=Rn.41563.1 /TIER=ConsEnd /STK=3 /UG=Rn.41563 /UG_TITLE=ESTs AI454466 guanine nucleotide binding protein (G protein), gamma 13 Gng13 685451 NM_001135918 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // not recorded /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0050909 // sensory perception of taste // inferred from electronic annotation /// 0050909 // sensory perception of taste // not recorded 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0005834 // heterotrimeric G-protein complex // not recorded 0003924 // GTPase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation 1377994_at AI501237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501237 /DB_XREF=gi:4399088 /DB_XREF=UI-R-C2p-ry-d-07-0-UI.s1 /CLONE=UI-R-C2p-ry-d-07-0-UI /FEA=EST /CNT=5 /TID=Rn.35311.1 /TIER=ConsEnd /STK=3 /UG=Rn.35311 /UG_TITLE=ESTs AI501237 1377995_at AA799854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799854 /DB_XREF=gi:2862809 /DB_XREF=EST189351 /CLONE=RHEAG17 /FEA=EST /CNT=5 /TID=Rn.6244.1 /TIER=ConsEnd /STK=3 /UG=Rn.6244 /UG_TITLE=ESTs AA799854 integrin alpha FG-GAP repeat containing 3 /// protein ITFG3-like Itfg3 /// LOC100365269 100365269 /// 360502 NM_001009701 /// XM_002724663 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1377996_at BE103975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103975 /DB_XREF=gi:8496075 /DB_XREF=UI-R-BX0-ari-b-08-0-UI.s1 /CLONE=UI-R-BX0-ari-b-08-0-UI /FEA=EST /CNT=5 /TID=Rn.48627.1 /TIER=ConsEnd /STK=3 /UG=Rn.48627 /UG_TITLE=ESTs BE103975 1377997_at AA943155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943155 /DB_XREF=gi:3103071 /DB_XREF=EST198654 /CLONE=RBRAF77 /FEA=EST /CNT=5 /TID=Rn.41523.1 /TIER=ConsEnd /STK=3 /UG=Rn.41523 /UG_TITLE=ESTs AA943155 ATP/GTP binding protein 1 Agtpbp1 290986 NM_001106100 0006508 // proteolysis // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0021702 // cerebellar Purkinje cell differentiation // inferred from electronic annotation /// 0021702 // cerebellar Purkinje cell differentiation // not recorded /// 0042133 // neurotransmitter metabolic process // inferred from electronic annotation /// 0042133 // neurotransmitter metabolic process // not recorded /// 0050905 // neuromuscular process // inferred from electronic annotation /// 0050905 // neuromuscular process // not recorded 0000221 // vacuolar proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 1377998_at BI288705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288705 /DB_XREF=gi:14945552 /DB_XREF=UI-R-DK0-cde-a-05-0-UI.s1 /CLONE=UI-R-DK0-cde-a-05-0-UI /FEA=EST /CNT=9 /TID=Rn.19581.1 /TIER=ConsEnd /STK=3 /UG=Rn.19581 /UG_TITLE=ESTs, Highly similar to HEM6 MOUSE COPROPORPHYRINOGEN III OXIDASE PRECURSOR (M.musculus) BI288705 coproporphyrinogen oxidase Cpox 304024 NM_001037095 0006779 // porphyrin biosynthetic process // inferred from electronic annotation /// 0006782 // protoporphyrinogen IX biosynthetic process // inferred from direct assay /// 0006783 // heme biosynthetic process // inferred from direct assay /// 0006783 // heme biosynthetic process // inferred from electronic annotation /// 0006783 // heme biosynthetic process // not recorded /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010039 // response to iron ion // inferred from expression pattern /// 0010288 // response to lead ion // inferred from expression pattern /// 0017085 // response to insecticide // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0046685 // response to arsenic // inferred from expression pattern /// 0046689 // response to mercury ion // inferred from expression pattern /// 0051597 // response to methylmercury // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005758 // mitochondrial intermembrane space // inferred from direct assay /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation 0004109 // coproporphyrinogen oxidase activity // inferred from direct assay /// 0004109 // coproporphyrinogen oxidase activity // not recorded /// 0004109 // coproporphyrinogen oxidase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation 1377999_at BE103242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103242 /DB_XREF=gi:8495341 /DB_XREF=UI-R-BX0-aqy-c-09-0-UI.s1 /CLONE=UI-R-BX0-aqy-c-09-0-UI /FEA=EST /CNT=9 /TID=Rn.37749.1 /TIER=ConsEnd /STK=3 /UG=Rn.37749 /UG_TITLE=ESTs BE103242 1378000_at AA801075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA801075 /DB_XREF=gi:2864030 /DB_XREF=EST190572 /CLONE=ROVAA36 /FEA=EST /CNT=8 /TID=Rn.34520.1 /TIER=ConsEnd /STK=3 /UG=Rn.34520 /UG_TITLE=ESTs AA801075 hypothetical protein LOC679651 LOC679651 679651 NM_001195277 /// XM_001053868 /// XM_002726348 1378001_at AI548615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548615 /DB_XREF=gi:4466103 /DB_XREF=UI-R-C3-te-b-11-0-UI.s1 /CLONE=UI-R-C3-te-b-11-0-UI /FEA=EST /CNT=8 /TID=Rn.26537.1 /TIER=ConsEnd /STK=3 /UG=Rn.26537 /UG_TITLE=ESTs AI548615 1378002_at BF401583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401583 /DB_XREF=gi:11389558 /DB_XREF=UI-R-CA0-bgm-c-12-0-UI.s1 /CLONE=UI-R-CA0-bgm-c-12-0-UI /FEA=EST /CNT=7 /TID=Rn.45862.1 /TIER=ConsEnd /STK=3 /UG=Rn.45862 /UG_TITLE=ESTs, Moderately similar to OS94 MOUSE OSMOTIC STRESS PROTEIN 94 (M.musculus) BF401583 heat shock protein 4 like Hspa4l 294993 NM_001106428 0006457 // protein folding // inferred from direct assay /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation 1378003_at BM391860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391860 /DB_XREF=gi:18191913 /DB_XREF=UI-R-DO1-cmk-j-12-0-UI.s1 /CLONE=UI-R-DO1-cmk-j-12-0-UI /FEA=EST /CNT=7 /TID=Rn.14974.1 /TIER=ConsEnd /STK=3 /UG=Rn.14974 /UG_TITLE=ESTs BM391860 leucine rich repeat containing 8 family, member B Lrrc8b 305135 NM_001107204 0005515 // protein binding // inferred from electronic annotation 1378004_at BF287788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287788 /DB_XREF=gi:11218858 /DB_XREF=EST452379 /CLONE=RGIGK15 /FEA=EST /CNT=7 /TID=Rn.30661.1 /TIER=ConsEnd /STK=3 /UG=Rn.30661 /UG_TITLE=ESTs BF287788 1378005_at AW527486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527486 /DB_XREF=gi:7169900 /DB_XREF=UI-R-BO1-ajt-h-04-0-UI.s1 /CLONE=UI-R-BO1-ajt-h-04-0-UI /FEA=EST /CNT=7 /TID=Rn.24818.1 /TIER=ConsEnd /STK=3 /UG=Rn.24818 /UG_TITLE=ESTs AW527486 1378006_at AI233832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233832 /DB_XREF=gi:3817712 /DB_XREF=EST230520 /CLONE=RLUCR73 /FEA=EST /CNT=7 /TID=Rn.40210.1 /TIER=ConsEnd /STK=3 /UG=Rn.40210 /UG_TITLE=ESTs, Weakly similar to env polyprotein, retrovirus-related (M.musculus) AI233832 1378007_at BE103359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103359 /DB_XREF=gi:8495458 /DB_XREF=UI-R-BX0-aqz-h-07-0-UI.s1 /CLONE=UI-R-BX0-aqz-h-07-0-UI /FEA=EST /CNT=7 /TID=Rn.18775.1 /TIER=ConsEnd /STK=3 /UG=Rn.18775 /UG_TITLE=ESTs BE103359 similar to KIAA0368 RGD1306148 313196 XR_085838 /// XR_086255 0030433 // ER-associated protein catabolic process // not recorded 0000502 // proteasome complex // not recorded /// 0005634 // nucleus // not recorded /// 0005769 // early endosome // not recorded /// 0005770 // late endosome // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005802 // trans-Golgi network // not recorded /// 0005813 // centrosome // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0030134 // ER to Golgi transport vesicle // not recorded 1378008_at BF417386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417386 /DB_XREF=gi:11405375 /DB_XREF=UI-R-CN0-bld-e-11-0-UI.s1 /CLONE=UI-R-CN0-bld-e-11-0-UI /FEA=EST /CNT=7 /TID=Rn.54956.1 /TIER=ConsEnd /STK=3 /UG=Rn.54956 /UG_TITLE=ESTs BF417386 1378009_at BF282481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282481 /DB_XREF=gi:11213551 /DB_XREF=EST447072 /CLONE=RGIDN88 /FEA=EST /CNT=6 /TID=Rn.4116.1 /TIER=ConsEnd /STK=3 /UG=Rn.4116 /UG_TITLE=ESTs BF282481 1378010_at BG662522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG662522 /DB_XREF=gi:13884444 /DB_XREF=DRAAAG10 /CLONE=DRAAAG10 /FEA=EST /CNT=6 /TID=Rn.45604.1 /TIER=ConsEnd /STK=3 /UG=Rn.45604 /UG_TITLE=ESTs BG662522 1378011_at BF282696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282696 /DB_XREF=gi:11213766 /DB_XREF=EST447287 /CLONE=RGIDR80 /FEA=EST /CNT=6 /TID=Rn.8148.1 /TIER=ConsEnd /STK=3 /UG=Rn.8148 /UG_TITLE=ESTs BF282696 1378012_at BM389040 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389040 /DB_XREF=gi:18189093 /DB_XREF=UI-R-DZ0-cko-f-03-0-UI.s1 /CLONE=UI-R-DZ0-cko-f-03-0-UI /FEA=EST /CNT=6 /TID=Rn.77433.1 /TIER=ConsEnd /STK=3 /UG=Rn.77433 /UG_TITLE=ESTs, Highly similar to SYNAPTONEMAL COMPLEX PROTEIN SC65 (R.norvegicus) BM389040 synaptonemal complex protein SC65 Sc65 59101 NM_021581 0000795 // synaptonemal complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1378013_at BF283303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283303 /DB_XREF=gi:11214373 /DB_XREF=EST447894 /CLONE=RGIEA05 /FEA=EST /CNT=6 /TID=Rn.24746.1 /TIER=ConsEnd /STK=3 /UG=Rn.24746 /UG_TITLE=ESTs BF283303 1378014_at BF405144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405144 /DB_XREF=gi:11393119 /DB_XREF=UI-R-CA1-biq-c-05-0-UI.s1 /CLONE=UI-R-CA1-biq-c-05-0-UI /FEA=EST /CNT=6 /TID=Rn.25472.1 /TIER=ConsEnd /STK=3 /UG=Rn.25472 /UG_TITLE=ESTs BF405144 Sertolin LOC64038 64038 NM_022271 0007283 // spermatogenesis // inferred from expression pattern 0005829 // cytosol // inferred from direct assay 1378015_at BI282920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282920 /DB_XREF=gi:14934163 /DB_XREF=UI-R-CW0s-ccc-h-08-0-UI.s1 /CLONE=UI-R-CW0s-ccc-h-08-0-UI /FEA=EST /CNT=6 /TID=Rn.39658.1 /TIER=ConsEnd /STK=3 /UG=Rn.39658 /UG_TITLE=ESTs, Moderately similar to SY21 MOUSE SMALL INDUCIBLE CYTOKINE A21 PRECURSOR (M.musculus) BI282920 chemokine (C-C motif) ligand 21b Ccl21b 298006 NM_001008513 0006955 // immune response // inferred from electronic annotation /// 0048535 // lymph node development // not recorded /// 0050930 // induction of positive chemotaxis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annotation 1378016_at BE104462 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104462 /DB_XREF=gi:8496527 /DB_XREF=UI-R-BX0-aro-g-08-0-UI.s1 /CLONE=UI-R-BX0-aro-g-08-0-UI /FEA=EST /CNT=6 /TID=Rn.13058.2 /TIER=ConsEnd /STK=3 /UG=Rn.13058 /UG_TITLE=ESTs BE104462 echinoderm microtubule associated protein like 4 Eml4 313861 NM_001108008 0005515 // protein binding // not recorded 1378017_at AI408960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408960 /DB_XREF=gi:4252464 /DB_XREF=EST237251 /CLONE=RKIDK66 /FEA=EST /CNT=6 /TID=Rn.27622.1 /TIER=ConsEnd /STK=3 /UG=Rn.27622 /UG_TITLE=ESTs, Weakly similar to YD30_YEAST HYPOTHETICAL 112.2 KD PROTEIN IN TIF35-NPL3 INTERGENIC REGION (ORF1) (S.cerevisiae) AI408960 pitrilysin metallopeptidase 1 Pitrm1 307081 NM_001107363 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded 0005634 // nucleus // not recorded /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // not recorded /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378018_at BE098045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098045 /DB_XREF=gi:8489908 /DB_XREF=UI-R-BJ1-asw-c-01-0-UI.s1 /CLONE=UI-R-BJ1-asw-c-01-0-UI /FEA=EST /CNT=6 /TID=Rn.37540.1 /TIER=ConsEnd /STK=3 /UG=Rn.37540 /UG_TITLE=ESTs BE098045 1378019_at AI104278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104278 /DB_XREF=gi:3708659 /DB_XREF=EST213567 /CLONE=RHEBZ70 /FEA=EST /CNT=6 /TID=Rn.13038.1 /TIER=ConsEnd /STK=3 /UG=Rn.13038 /UG_TITLE=ESTs AI104278 nudix (nucleoside diphosphate linked moiety X)-type motif 13 Nudt13 682978 NM_001127636 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378020_at AI060205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060205 /DB_XREF=gi:3333982 /DB_XREF=UI-R-C1-lm-b-05-0-UI.s1 /CLONE=UI-R-C1-lm-b-05-0-UI /FEA=EST /CNT=6 /TID=Rn.13852.1 /TIER=ConsEnd /STK=3 /UG=Rn.13852 /UG_TITLE=ESTs AI060205 1378021_at AI102035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102035 /DB_XREF=gi:3706870 /DB_XREF=EST211324 /CLONE=RBRBY19 /FEA=EST /CNT=5 /TID=Rn.28130.1 /TIER=ConsEnd /STK=3 /UG=Rn.28130 /UG_TITLE=ESTs AI102035 1378022_at BE113167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113167 /DB_XREF=gi:8505272 /DB_XREF=UI-R-BJ1-awc-c-09-0-UI.s1 /CLONE=UI-R-BJ1-awc-c-09-0-UI /FEA=EST /CNT=5 /TID=Rn.15969.1 /TIER=ConsEnd /STK=3 /UG=Rn.15969 /UG_TITLE=ESTs, Weakly similar to S44866 R05D3.4 protein - Caenorhabditis elegans (C.elegans) BE113167 ring finger protein 20 Rnf20 313216 NM_001107929 0000209 // protein polyubiquitination // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0010390 // histone monoubiquitination // not recorded /// 0030336 // negative regulation of cell migration // not recorded /// 0032583 // regulation of gene-specific transcription // not recorded /// 0033523 // histone H2B ubiquitination // not recorded /// 0045941 // positive regulation of transcription // not recorded 0000151 // ubiquitin ligase complex // not recorded /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0002039 // p53 binding // not recorded /// 0003713 // transcription coactivator activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0042393 // histone binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1378023_at AW532259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532259 /DB_XREF=gi:7174673 /DB_XREF=UI-R-C4-all-c-11-0-UI.s1 /CLONE=UI-R-C4-all-c-11-0-UI /FEA=EST /CNT=5 /TID=Rn.47813.1 /TIER=ConsEnd /STK=3 /UG=Rn.47813 /UG_TITLE=ESTs AW532259 1378024_at BI296049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296049 /DB_XREF=gi:14960102 /DB_XREF=UI-R-DK0-cfd-g-05-0-UI.s1 /CLONE=UI-R-DK0-cfd-g-05-0-UI /FEA=EST /CNT=5 /TID=Rn.41794.1 /TIER=ConsEnd /STK=3 /UG=Rn.41794 /UG_TITLE=ESTs, Weakly similar to 2013370A GTP-binding protein Gh (R.norvegicus) BI296049 transglutaminase 5 Tgm5 691929 XM_001080153 /// XM_002726216 0018149 // peptide cross-linking // inferred from electronic annotation 0003810 // protein-glutamine gamma-glutamyltransferase activity // inferred from electronic annotation 1378025_at AI598498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598498 /DB_XREF=gi:4607532 /DB_XREF=EST250187 /CLONE=REMDR42 /FEA=EST /CNT=5 /TID=Rn.23317.1 /TIER=ConsEnd /STK=3 /UG=Rn.23317 /UG_TITLE=ESTs AI598498 1378026_at BE109912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109912 /DB_XREF=gi:8502017 /DB_XREF=UI-R-CA0-axi-g-11-0-UI.s1 /CLONE=UI-R-CA0-axi-g-11-0-UI /FEA=EST /CNT=5 /TID=Rn.46824.1 /TIER=ConsEnd /STK=3 /UG=Rn.46824 /UG_TITLE=ESTs BE109912 1378027_at AW525315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525315 /DB_XREF=gi:7167665 /DB_XREF=UI-R-BJ0p-aip-h-04-0-UI.s1 /CLONE=UI-R-BJ0p-aip-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.23077.1 /TIER=ConsEnd /STK=3 /UG=Rn.23077 /UG_TITLE=ESTs, Moderately similar to T08732 hypothetical protein DKFZp566B0846.1 (H.sapiens) AW525315 poliovirus receptor-related 3 Pvrl3 288124 NM_001105883 0002089 // lens morphogenesis in camera-type eye // not recorded /// 0007155 // cell adhesion // not recorded /// 0007156 // homophilic cell adhesion // not recorded /// 0009566 // fertilization // not recorded /// 0016337 // cell-cell adhesion // not recorded /// 0060042 // retina morphogenesis in camera-type eye // not recorded 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // not recorded /// 0005913 // cell-cell adherens junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043296 // apical junction complex // not recorded 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0050839 // cell adhesion molecule binding // not recorded 1378028_at BM384425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384425 /DB_XREF=gi:18184478 /DB_XREF=UI-R-CN1-cjn-i-16-0-UI.s1 /CLONE=UI-R-CN1-cjn-i-16-0-UI /FEA=EST /CNT=5 /TID=Rn.14931.1 /TIER=ConsEnd /STK=3 /UG=Rn.14931 /UG_TITLE=ESTs, Highly similar to MD21_MOUSE MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2A (MAD2-LIKE 1) (M.musculus) BM384425 MAD2 mitotic arrest deficient-like 1 (yeast) Mad2l1 297176 NM_001106594 0000070 // mitotic sister chromatid segregation // not recorded /// 0007067 // mitosis // inferred from electronic annotation /// 0007093 // mitotic cell cycle checkpoint // not recorded /// 0007094 // mitotic cell cycle spindle assembly checkpoint // not recorded /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000775 // chromosome, centromeric region // not recorded /// 0000776 // kinetochore // not recorded /// 0005634 // nucleus // not recorded /// 0005643 // nuclear pore // not recorded /// 0005816 // spindle pole body // not recorded /// 0005829 // cytosol // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1378029_at AI233769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233769 /DB_XREF=gi:3817649 /DB_XREF=EST230457 /CLONE=RKIDJ85 /FEA=EST /CNT=5 /TID=Rn.6440.1 /TIER=ConsEnd /STK=3 /UG=Rn.6440 /UG_TITLE=ESTs AI233769 1378030_at AW527482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527482 /DB_XREF=gi:7169896 /DB_XREF=UI-R-BO1-ajt-g-12-0-UI.s1 /CLONE=UI-R-BO1-ajt-g-12-0-UI /FEA=EST /CNT=5 /TID=Rn.46228.1 /TIER=ConsEnd /STK=3 /UG=Rn.46228 /UG_TITLE=ESTs AW527482 1378031_at AI230161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230161 /DB_XREF=gi:3814048 /DB_XREF=EST226856 /CLONE=REMCT09 /FEA=EST /CNT=5 /TID=Rn.24493.1 /TIER=ConsEnd /STK=3 /UG=Rn.24493 /UG_TITLE=ESTs, Weakly similar to YKQ0_CAEEL PUTATIVE ATP-DEPENDENT RNA HELICASE C06E1.10 IN CHROMOSOME III (C.elegans) AI230161 DEAH (Asp-Glu-Ala-His) box polypeptide 37 Dhx37 288647 NM_001105926 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1378032_at AI176265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176265 /DB_XREF=gi:3726903 /DB_XREF=EST219847 /CLONE=ROVBP34 /FEA=EST /CNT=5 /TID=Rn.804.1 /TIER=ConsEnd /STK=3 /UG=Rn.804 /UG_TITLE=ESTs AI176265 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta Nfkbiz 304005 NM_001107095 0006954 // inflammatory response // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1378033_at AI029178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029178 /DB_XREF=gi:4296760 /DB_XREF=UI-R-C0-iv-g-09-0-UI.s1 /CLONE=UI-R-C0-iv-g-09-0-UI /FEA=EST /CNT=5 /TID=Rn.18164.1 /TIER=ConsEnd /STK=3 /UG=Rn.18164 /UG_TITLE=ESTs AI029178 1378034_at BF552141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552141 /DB_XREF=gi:11661871 /DB_XREF=UI-R-C2p-ok-f-05-0-UI.r1 /CLONE=UI-R-C2p-ok-f-05-0-UI /FEA=EST /CNT=5 /TID=Rn.22853.1 /TIER=ConsEnd /STK=3 /UG=Rn.22853 /UG_TITLE=ESTs BF552141 MTERF domain containing 3 Mterfd3 366856 NM_001014265 0006350 // transcription // inferred from electronic annotation /// 0006353 // transcription termination // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from sequence or structural similarity 0010843 // promoter binding // inferred from sequence or structural similarity /// 0030528 // transcription regulator activity // inferred from sequence or structural similarity 1378035_at AI598512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598512 /DB_XREF=gi:4607546 /DB_XREF=EST250201 /CLONE=REMDR85 /FEA=EST /CNT=5 /TID=Rn.40390.1 /TIER=ConsEnd /STK=3 /UG=Rn.40390 /UG_TITLE=ESTs AI598512 1378036_at AI029387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029387 /DB_XREF=gi:4298219 /DB_XREF=UI-R-C0-iw-a-10-0-UI.s1 /CLONE=UI-R-C0-iw-a-10-0-UI /FEA=EST /CNT=5 /TID=Rn.17437.1 /TIER=ConsEnd /STK=3 /UG=Rn.17437 /UG_TITLE=ESTs AI029387 DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae) Dcun1d1 310324 NM_001107668 0000151 // ubiquitin ligase complex // not recorded 0005515 // protein binding // not recorded 1378037_at BM390078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390078 /DB_XREF=gi:18190126 /DB_XREF=UI-R-CN1-cjo-l-03-0-UI.s1 /CLONE=UI-R-CN1-cjo-l-03-0-UI /FEA=EST /CNT=5 /TID=Rn.41695.1 /TIER=ConsEnd /STK=3 /UG=Rn.41695 /UG_TITLE=ESTs BM390078 ring finger protein 215 Rnf215 305478 NM_001107234 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378038_at BF393884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393884 /DB_XREF=gi:11378747 /DB_XREF=UI-R-CA0-bgw-b-06-0-UI.s1 /CLONE=UI-R-CA0-bgw-b-06-0-UI /FEA=EST /CNT=5 /TID=Rn.47381.1 /TIER=ConsEnd /STK=3 /UG=Rn.47381 /UG_TITLE=ESTs BF393884 1378039_at BG381187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381187 /DB_XREF=gi:13305659 /DB_XREF=UI-R-CT0-buh-c-07-0-UI.s1 /CLONE=UI-R-CT0-buh-c-07-0-UI /FEA=EST /CNT=5 /TID=Rn.3071.2 /TIER=ConsEnd /STK=3 /UG=Rn.3071 /UG_TITLE=ESTs BG381187 1378040_at BE111867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111867 /DB_XREF=gi:8503972 /DB_XREF=UI-R-BJ1-avz-h-02-0-UI.s1 /CLONE=UI-R-BJ1-avz-h-02-0-UI /FEA=EST /CNT=5 /TID=Rn.15314.1 /TIER=ConsEnd /STK=3 /UG=Rn.15314 /UG_TITLE=ESTs BE111867 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14 Chst14 691394 NM_001109639 0016051 // carbohydrate biosynthetic process // inferred from electronic annotation /// 0050655 // dermatan sulfate proteoglycan metabolic process // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0001537 // N-acetylgalactosamine 4-O-sulfotransferase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1378041_at BM388756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388756 /DB_XREF=gi:18188809 /DB_XREF=UI-R-DZ0-ckn-a-19-0-UI.s1 /CLONE=UI-R-DZ0-ckn-a-19-0-UI /FEA=EST /CNT=5 /TID=Rn.79339.1 /TIER=ConsEnd /STK=3 /UG=Rn.79339 /UG_TITLE=ESTs, Weakly similar to S12207 hypothetical protein (M.musculus) BM388756 ATP-binding cassette, sub-family B (MDR/TAP), member 8 Abcb8 362302 NM_001007796 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 1378042_at AA801132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA801132 /DB_XREF=gi:2864087 /DB_XREF=EST190629 /CLONE=ROVAA75 /FEA=EST /CNT=5 /TID=Rn.62697.1 /TIER=ConsEnd /STK=3 /UG=Rn.62697 /UG_TITLE=ESTs AA801132 transmembrane protein 212 Tmem212 499586 NM_001164438 /// NM_001164439 1378043_at AW532890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532890 /DB_XREF=gi:7175304 /DB_XREF=UI-R-BU0-ang-d-03-0-UI.s1 /CLONE=UI-R-BU0-ang-d-03-0-UI /FEA=EST /CNT=5 /TID=Rn.46326.1 /TIER=ConsEnd /STK=3 /UG=Rn.46326 /UG_TITLE=ESTs AW532890 similar to OEF2 RGD1563091 500011 XM_001069221 /// XM_575365 1378044_at AA964294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964294 /DB_XREF=gi:4279170 /DB_XREF=UI-R-C0-gy-d-10-0-UI.s1 /CLONE=UI-R-C0-gy-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.18483.1 /TIER=ConsEnd /STK=3 /UG=Rn.18483 /UG_TITLE=ESTs AA964294 1378045_at AI070110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070110 /DB_XREF=gi:3396361 /DB_XREF=UI-R-Y0-lu-a-11-0-UI.s1 /CLONE=UI-R-Y0-lu-a-11-0-UI /FEA=EST /CNT=5 /TID=Rn.19657.1 /TIER=ConsEnd /STK=3 /UG=Rn.19657 /UG_TITLE=ESTs AI070110 complement component 1, q subcomponent-like 1 C1ql1 363686 NM_001108838 0005737 // cytoplasm // not recorded 1378046_at AI407320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407320 /DB_XREF=gi:4250824 /DB_XREF=EST235608 /CLONE=ROVDR11 /FEA=EST /CNT=5 /TID=Rn.33588.1 /TIER=ConsEnd /STK=3 /UG=Rn.33588 /UG_TITLE=ESTs AI407320 fucokinase Fuk 307848 NM_001107429 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1378047_at AA901337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901337 /DB_XREF=gi:4233838 /DB_XREF=UI-R-A1-dw-a-12-0-UI.s1 /CLONE=UI-R-A1-dw-a-12-0-UI /FEA=EST /CNT=5 /TID=Rn.12056.1 /TIER=ConsEnd /STK=3 /UG=Rn.12056 /UG_TITLE=ESTs, Weakly similar to beta-globin DNA-binding protein B1, transcription factor PU.1 (M.musculus) AA901337 Spi-C transcription factor (Spi-1/PU.1 related) Spic 314711 NM_001108080 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1378048_at BE116976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116976 /DB_XREF=gi:8509081 /DB_XREF=UI-R-BS1-ayl-d-09-0-UI.s1 /CLONE=UI-R-BS1-ayl-d-09-0-UI /FEA=EST /CNT=5 /TID=Rn.21091.1 /TIER=ConsEnd /STK=3 /UG=Rn.21091 /UG_TITLE=ESTs BE116976 transcription factor 7-like 2 (T-cell specific, HMG-box) Tcf7l2 679869 NM_001191052 /// XM_001054844 /// XM_001072143 /// XM_001072429 /// XM_001072472 /// XM_001072554 /// XM_002725792 /// XM_002725793 0001568 // blood vessel development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0008283 // cell proliferation // not recorded /// 0009749 // response to glucose stimulus // not recorded /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0010909 // positive regulation of heparan sulfate proteoglycan biosynthetic process // not recorded /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0021915 // neural tube development // not recorded /// 0030538 // embryonic genitalia morphogenesis // not recorded /// 0032024 // positive regulation of insulin secretion // not recorded /// 0032092 // positive regulation of protein binding // not recorded /// 0032350 // regulation of hormone metabolic process // not recorded /// 0035019 // somatic stem cell maintenance // not recorded /// 0042593 // glucose homeostasis // not recorded /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0043570 // maintenance of DNA repeat elements // not recorded /// 0045444 // fat cell differentiation // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046827 // positive regulation of protein export from nucleus // not recorded /// 0048557 // embryonic digestive tract morphogenesis // not recorded /// 0048619 // embryonic hindgut morphogenesis // not recorded /// 0048625 // myoblast cell fate commitment // not recorded /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // not recorded /// 0005829 // cytosol // not recorded /// 0032993 // protein-DNA complex // not recorded /// 0070369 // beta-catenin-TCF7L2 complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008013 // beta-catenin binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0019901 // protein kinase binding // not recorded /// 0035257 // nuclear hormone receptor binding // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0045295 // gamma-catenin binding // not recorded 1378049_at AI603565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI603565 /DB_XREF=gi:4612726 /DB_XREF=UI-R-AF0-ya-b-10-0-UI.s1 /CLONE=UI-R-AF0-ya-b-10-0-UI /FEA=EST /CNT=5 /TID=Rn.40351.1 /TIER=ConsEnd /STK=3 /UG=Rn.40351 /UG_TITLE=ESTs AI603565 Zinc finger protein 362 Zfp362 297879 NM_001191612 /// XM_001060148 /// XM_216345 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1378050_at AI058960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058960 /DB_XREF=gi:3332737 /DB_XREF=UI-R-C1-lr-f-10-0-UI.s1 /CLONE=UI-R-C1-lr-f-10-0-UI /FEA=EST /CNT=5 /TID=Rn.19031.1 /TIER=ConsEnd /STK=3 /UG=Rn.19031 /UG_TITLE=ESTs AI058960 histidyl-tRNA synthetase 2-like Hars2l 307491 NM_001014012 0006412 // translation // inferred from electronic annotation /// 0006427 // histidyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004821 // histidine-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1378051_at AA858648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858648 /DB_XREF=gi:4228842 /DB_XREF=UI-R-A0-bf-c-12-0-UI.s1 /CLONE=UI-R-A0-bf-c-12-0-UI /FEA=EST /CNT=5 /TID=Rn.44176.1 /TIER=ConsEnd /STK=3 /UG=Rn.44176 /UG_TITLE=ESTs AA858648 1378052_at AW253907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253907 /DB_XREF=gi:6597498 /DB_XREF=UI-R-BJ0-aec-g-06-0-UI.s1 /CLONE=UI-R-BJ0-aec-g-06-0-UI /FEA=EST /CNT=5 /TID=Rn.41086.1 /TIER=ConsEnd /STK=3 /UG=Rn.41086 /UG_TITLE=ESTs AW253907 1378053_at BE120247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120247 /DB_XREF=gi:8512352 /DB_XREF=UI-R-CA0-bal-c-05-0-UI.s1 /CLONE=UI-R-CA0-bal-c-05-0-UI /FEA=EST /CNT=5 /TID=Rn.34768.1 /TIER=ConsEnd /STK=3 /UG=Rn.34768 /UG_TITLE=ESTs BE120247 1378054_at BE108397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108397 /DB_XREF=gi:8500502 /DB_XREF=UI-R-BS1-ayv-g-09-0-UI.s1 /CLONE=UI-R-BS1-ayv-g-09-0-UI /FEA=EST /CNT=4 /TID=Rn.27752.1 /TIER=ConsEnd /STK=3 /UG=Rn.27752 /UG_TITLE=ESTs BE108397 1378055_at BI296430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296430 /DB_XREF=gi:14960846 /DB_XREF=UI-R-CV2-cgr-b-03-0-UI.s1 /CLONE=UI-R-CV2-cgr-b-03-0-UI /FEA=EST /CNT=4 /TID=Rn.76392.1 /TIER=ConsEnd /STK=3 /UG=Rn.76392 /UG_TITLE=ESTs BI296430 1378056_at BM391984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391984 /DB_XREF=gi:18192037 /DB_XREF=UI-R-DO1-cmk-c-18-0-UI.s1 /CLONE=UI-R-DO1-cmk-c-18-0-UI /FEA=EST /CNT=4 /TID=Rn.15438.1 /TIER=ConsEnd /STK=3 /UG=Rn.15438 /UG_TITLE=ESTs BM391984 geminin Gmnn 291137 NM_001106112 0006461 // protein complex assembly // not recorded /// 0008156 // negative regulation of DNA replication // inferred from electronic annotation /// 0008156 // negative regulation of DNA replication // not recorded /// 0009887 // organ morphogenesis // not recorded /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0045786 // negative regulation of cell cycle // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0042826 // histone deacetylase binding // not recorded /// 0070491 // transcription repressor binding // not recorded 1378057_at BE103354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103354 /DB_XREF=gi:8495453 /DB_XREF=UI-R-BX0-aqz-h-01-0-UI.s1 /CLONE=UI-R-BX0-aqz-h-01-0-UI /FEA=EST /CNT=4 /TID=Rn.37538.1 /TIER=ConsEnd /STK=3 /UG=Rn.37538 /UG_TITLE=ESTs BE103354 fibronectin leucine rich transmembrane protein 3 Flrt3 366205 NM_001126291 0007155 // cell adhesion // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1378058_at AI137429 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137429 /DB_XREF=gi:3638206 /DB_XREF=UI-R-C2p-ok-e-08-0-UI.s1 /CLONE=UI-R-C2p-ok-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.23771.1 /TIER=ConsEnd /STK=3 /UG=Rn.23771 /UG_TITLE=ESTs AI137429 1378059_at BF412644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412644 /DB_XREF=gi:11400633 /DB_XREF=UI-R-BT1-bnq-c-10-0-UI.s1 /CLONE=UI-R-BT1-bnq-c-10-0-UI /FEA=EST /CNT=4 /TID=Rn.48018.1 /TIER=ConsEnd /STK=3 /UG=Rn.48018 /UG_TITLE=ESTs BF412644 1378060_at BF399121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399121 /DB_XREF=gi:11384125 /DB_XREF=UI-R-CA1-bja-j-20-0-UI.s1 /CLONE=UI-R-CA1-bja-j-20-0-UI /FEA=EST /CNT=4 /TID=Rn.47551.1 /TIER=ConsEnd /STK=3 /UG=Rn.47551 /UG_TITLE=ESTs BF399121 1378061_at AI043888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043888 /DB_XREF=gi:3290623 /DB_XREF=UI-R-C0-jk-c-06-0-UI.s1 /CLONE=UI-R-C0-jk-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.18746.1 /TIER=ConsEnd /STK=3 /UG=Rn.18746 /UG_TITLE=ESTs, Weakly similar to WD domain, G-beta repeats (Caenorhabditis elegans) (C.elegans) AI043888 intraflagellar transport 122 homolog (Chlamydomonas) Ift122 312651 XM_001054604 /// XM_001057925 0019861 // flagellum // inferred from electronic annotation 1378062_at BF398677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398677 /DB_XREF=gi:11383674 /DB_XREF=UI-R-BS2-ber-f-01-0-UI.s1 /CLONE=UI-R-BS2-ber-f-01-0-UI /FEA=EST /CNT=4 /TID=Rn.45904.1 /TIER=ConsEnd /STK=3 /UG=Rn.45904 /UG_TITLE=ESTs BF398677 1378063_at AW524795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524795 /DB_XREF=gi:7167180 /DB_XREF=UI-R-BO0-ahy-d-07-0-UI.s1 /CLONE=UI-R-BO0-ahy-d-07-0-UI /FEA=EST /CNT=4 /TID=Rn.45926.1 /TIER=ConsEnd /STK=3 /UG=Rn.45926 /UG_TITLE=ESTs AW524795 1378064_at AI144892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144892 /DB_XREF=gi:3666691 /DB_XREF=UI-R-BT0-pp-b-03-0-UI.s1 /CLONE=UI-R-BT0-pp-b-03-0-UI /FEA=EST /CNT=4 /TID=Rn.27720.1 /TIER=ConsEnd /STK=3 /UG=Rn.27720 /UG_TITLE=ESTs AI144892 1378065_at BI274450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274450 /DB_XREF=gi:14885377 /DB_XREF=UI-R-CW0-bwj-a-08-0-UI.s1 /CLONE=UI-R-CW0-bwj-a-08-0-UI /FEA=EST /CNT=4 /TID=Rn.66290.1 /TIER=ConsEnd /STK=3 /UG=Rn.66290 /UG_TITLE=ESTs BI274450 1378066_at AI103699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103699 /DB_XREF=gi:3708219 /DB_XREF=EST212988 /CLONE=REMCF34 /FEA=EST /CNT=4 /TID=Rn.28238.1 /TIER=ConsEnd /STK=3 /UG=Rn.28238 /UG_TITLE=ESTs AI103699 1378067_at BF396871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396871 /DB_XREF=gi:11381854 /DB_XREF=UI-R-BS2-bew-b-06-0-UI.s1 /CLONE=UI-R-BS2-bew-b-06-0-UI /FEA=EST /CNT=4 /TID=Rn.37815.1 /TIER=ConsEnd /STK=3 /UG=Rn.37815 /UG_TITLE=ESTs BF396871 Amino-terminal enhancer of split Aes 29466 NM_019220 0001501 // skeletal system development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0031668 // cellular response to extracellular stimulus // not recorded /// 0032091 // negative regulation of protein binding // not recorded /// 0040008 // regulation of growth // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0060761 // negative regulation of response to cytokine stimulus // not recorded /// 0070555 // response to interleukin-1 // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // not recorded 1378068_at AW529368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529368 /DB_XREF=gi:7171782 /DB_XREF=UI-R-BT1-akf-c-01-0-UI.s1 /CLONE=UI-R-BT1-akf-c-01-0-UI /FEA=EST /CNT=4 /TID=Rn.12834.1 /TIER=ConsEnd /STK=3 /UG=Rn.12834 /UG_TITLE=ESTs AW529368 microRNA mir-29c Mir29c 100314187 NR_031838 1378069_at BF411777 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411777 /DB_XREF=gi:11399766 /DB_XREF=UI-R-BT1-bmw-a-06-0-UI.s1 /CLONE=UI-R-BT1-bmw-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.46889.1 /TIER=ConsEnd /STK=3 /UG=Rn.46889 /UG_TITLE=ESTs, Highly similar to PKL1 RAT PROTEIN KINASE C-LIKE 1 (R.norvegicus) BF411777 Protein kinase N1 Pkn1 29355 NM_017175 0006350 // transcription // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006972 // hyperosmotic response // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0034339 // regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor // not recorded /// 0034339 // regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor // inferred from sequence or structural similarity /// 0035407 // histone H3-T11 phosphorylation // not recorded /// 0035407 // histone H3-T11 phosphorylation // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from sequence or structural similarity /// 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0005080 // protein kinase C binding // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017049 // GTP-Rho binding // not recorded /// 0017049 // GTP-Rho binding // inferred from sequence or structural similarity /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from sequence or structural similarity /// 0035402 // histone kinase activity (H3-T11 specific) // not recorded /// 0035402 // histone kinase activity (H3-T11 specific) // inferred from sequence or structural similarity /// 0042393 // histone binding // not recorded /// 0042393 // histone binding // inferred from sequence or structural similarity /// 0042826 // histone deacetylase binding // not recorded /// 0042826 // histone deacetylase binding // inferred from sequence or structural similarity /// 0048365 // Rac GTPase binding // not recorded /// 0048365 // Rac GTPase binding // inferred from sequence or structural similarity /// 0050681 // androgen receptor binding // not recorded /// 0050681 // androgen receptor binding // inferred from sequence or structural similarity 1378070_at BE099891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099891 /DB_XREF=gi:8491774 /DB_XREF=UI-R-BJ1-atl-d-03-0-UI.s1 /CLONE=UI-R-BJ1-atl-d-03-0-UI /FEA=EST /CNT=4 /TID=Rn.18121.1 /TIER=ConsEnd /STK=3 /UG=Rn.18121 /UG_TITLE=ESTs BE099891 1378071_at AA942941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA942941 /DB_XREF=gi:3102857 /DB_XREF=EST198440 /CLONE=RBRAC38 /FEA=EST /CNT=4 /TID=Rn.43768.1 /TIER=ConsEnd /STK=3 /UG=Rn.43768 /UG_TITLE=ESTs AA942941 1378072_at BE115405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115405 /DB_XREF=gi:8507510 /DB_XREF=UI-R-BS1-axu-c-11-0-UI.s1 /CLONE=UI-R-BS1-axu-c-11-0-UI /FEA=EST /CNT=4 /TID=Rn.21951.1 /TIER=ConsEnd /STK=3 /UG=Rn.21951 /UG_TITLE=ESTs BE115405 ATPase family, AAA domain containing 5 Atad5 303348 XM_001080963 /// XM_002724526 /// XM_002727783 /// XM_220750 0005524 // ATP binding // inferred from electronic annotation 1378073_at BF400810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400810 /DB_XREF=gi:11388825 /DB_XREF=UI-R-CA0-bhg-e-07-0-UI.s1 /CLONE=UI-R-CA0-bhg-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.51271.1 /TIER=ConsEnd /STK=3 /UG=Rn.51271 /UG_TITLE=ESTs, Highly similar to CCBA RAT DIHYDROPYRIDINE-SENSITIVE L-TYPE, CHANNEL BETA-1-B2 SUBUNIT (R.norvegicus) BF400810 calcium channel, voltage-dependent, beta 1 subunit Cacnb1 50688 NM_017346 0006612 // protein targeting to membrane // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0070588 // calcium ion transmembrane transport // not recorded 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // inferred from direct assay /// 0005891 // voltage-gated calcium channel complex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // not recorded /// 0030315 // T-tubule // not recorded /// 0042383 // sarcolemma // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from direct assay /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // not recorded /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008331 // high voltage-gated calcium channel activity // not recorded 1378074_at AI175045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175045 /DB_XREF=gi:3725683 /DB_XREF=EST218563 /CLONE=RMUCB47 /FEA=EST /CNT=4 /TID=Rn.11766.1 /TIER=ConsEnd /STK=3 /UG=Rn.11766 /UG_TITLE=ESTs AI175045 1378075_at BI275978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275978 /DB_XREF=gi:14920433 /DB_XREF=UI-R-CX0-bxi-f-10-0-UI.s1 /CLONE=UI-R-CX0-bxi-f-10-0-UI /FEA=EST /CNT=4 /TID=Rn.18566.1 /TIER=ConsEnd /STK=3 /UG=Rn.18566 /UG_TITLE=ESTs, Weakly similar to T9S2_MOUSE Transmembrane 9 superfamily protein member 2 precursor (M.musculus) BI275978 transmembrane 9 superfamily protein member 4 Tm9sf4 296279 NM_001025649 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1378076_at AA963273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963273 /DB_XREF=gi:4278197 /DB_XREF=UI-R-E1-gh-g-08-0-UI.s1 /CLONE=UI-R-E1-gh-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.11429.1 /TIER=ConsEnd /STK=3 /UG=Rn.11429 /UG_TITLE=ESTs AA963273 1378077_at BF412632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412632 /DB_XREF=gi:11400621 /DB_XREF=UI-R-BT1-bnq-b-05-0-UI.s1 /CLONE=UI-R-BT1-bnq-b-05-0-UI /FEA=EST /CNT=4 /TID=Rn.64207.1 /TIER=ConsEnd /STK=3 /UG=Rn.64207 /UG_TITLE=ESTs, Weakly similar to RL19_HUMAN 60S RIBOSOMAL PROTEIN L1 (R.norvegicus) BF412632 1378078_at BE095857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095857 /DB_XREF=gi:8486788 /DB_XREF=UI-R-BU0-apb-d-05-0-UI.s1 /CLONE=UI-R-BU0-apb-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.54984.1 /TIER=ConsEnd /STK=3 /UG=Rn.54984 /UG_TITLE=ESTs BE095857 1378079_at BI295829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295829 /DB_XREF=gi:14959668 /DB_XREF=UI-R-DK0-cfb-b-06-0-UI.s1 /CLONE=UI-R-DK0-cfb-b-06-0-UI /FEA=EST /CNT=4 /TID=Rn.48961.1 /TIER=ConsEnd /STK=3 /UG=Rn.48961 /UG_TITLE=ESTs, Highly similar to T42722 male-enhanced antigen-2 - mouse (M.musculus) BI295829 golgi autoantigen, golgin subfamily a, 3 Golga3 312077 NM_001107847 0000139 // Golgi membrane // not recorded /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0017119 // Golgi transport complex // not recorded 0005515 // protein binding // not recorded 1378080_at BI274498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274498 /DB_XREF=gi:14885465 /DB_XREF=UI-R-CW0-bwj-e-11-0-UI.s1 /CLONE=UI-R-CW0-bwj-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.13276.1 /TIER=ConsEnd /STK=3 /UG=Rn.13276 /UG_TITLE=ESTs BI274498 SCO cytochrome oxidase deficient homolog 1 (yeast) Sco1 497930 NM_001173374 /// XM_001078805 /// XM_573117 0006825 // copper ion transport // inferred from electronic annotation /// 0006878 // cellular copper ion homeostasis // inferred from electronic annotation /// 0008535 // respiratory chain complex IV assembly // inferred from electronic annotation /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation 0005507 // copper ion binding // inferred from electronic annotation 1378081_at BI285065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285065 /DB_XREF=gi:14938338 /DB_XREF=UI-R-DB0-byv-g-09-0-UI.s1 /CLONE=UI-R-DB0-byv-g-09-0-UI /FEA=EST /CNT=4 /TID=Rn.35356.1 /TIER=ConsEnd /STK=3 /UG=Rn.35356 /UG_TITLE=ESTs BI285065 1378082_at BF411790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411790 /DB_XREF=gi:11399779 /DB_XREF=UI-R-BT1-bmw-b-12-0-UI.s1 /CLONE=UI-R-BT1-bmw-b-12-0-UI /FEA=EST /CNT=4 /TID=Rn.46402.1 /TIER=ConsEnd /STK=3 /UG=Rn.46402 /UG_TITLE=ESTs BF411790 1378083_at BE106666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106666 /DB_XREF=gi:8498768 /DB_XREF=UI-R-BO1-asq-g-04-0-UI.s1 /CLONE=UI-R-BO1-asq-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.38231.1 /TIER=ConsEnd /STK=3 /UG=Rn.38231 /UG_TITLE=ESTs BE106666 1378084_at BF396266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396266 /DB_XREF=gi:11381238 /DB_XREF=UI-R-BS2-bdw-b-10-0-UI.s1 /CLONE=UI-R-BS2-bdw-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.35435.1 /TIER=ConsEnd /STK=3 /UG=Rn.35435 /UG_TITLE=ESTs BF396266 1378085_at BM387330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387330 /DB_XREF=gi:18187383 /DB_XREF=UI-R-CN1-cjj-a-09-0-UI.s1 /CLONE=UI-R-CN1-cjj-a-09-0-UI /FEA=EST /CNT=4 /TID=Rn.28417.1 /TIER=ConsEnd /STK=3 /UG=Rn.28417 /UG_TITLE=ESTs BM387330 epsin 3 Epn3 360605 NM_001024791 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0008289 // lipid binding // inferred from electronic annotation 1378086_at BI274148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274148 /DB_XREF=gi:14884798 /DB_XREF=UI-R-CW0-bwf-e-09-0-UI.s1 /CLONE=UI-R-CW0-bwf-e-09-0-UI /FEA=EST /CNT=4 /TID=Rn.18371.1 /TIER=ConsEnd /STK=3 /UG=Rn.18371 /UG_TITLE=ESTs BI274148 1378087_at BM387164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387164 /DB_XREF=gi:18187217 /DB_XREF=UI-R-CN1-cji-j-11-0-UI.s1 /CLONE=UI-R-CN1-cji-j-11-0-UI /FEA=EST /CNT=4 /TID=Rn.45036.1 /TIER=ConsEnd /STK=3 /UG=Rn.45036 /UG_TITLE=ESTs BM387164 1378088_at BM386245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386245 /DB_XREF=gi:18186298 /DB_XREF=UI-R-CN1-cjf-k-08-0-UI.s1 /CLONE=UI-R-CN1-cjf-k-08-0-UI /FEA=EST /CNT=4 /TID=Rn.29886.1 /TIER=ConsEnd /STK=3 /UG=Rn.29886 /UG_TITLE=ESTs BM386245 zinc finger, DHHC-type containing 1 Zdhhc1 291967 NM_001039099 0018345 // protein palmitoylation // inferred from electronic annotation /// 0018345 // protein palmitoylation // not recorded 0008270 // zinc ion binding // inferred from electronic annotation /// 0016409 // palmitoyltransferase activity // inferred from electronic annotation /// 0016409 // palmitoyltransferase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1378089_at AI715411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715411 /DB_XREF=gi:5032664 /DB_XREF=UI-R-Y0-abm-c-04-0-UI.s1 /CLONE=UI-R-Y0-abm-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.35513.1 /TIER=ConsEnd /STK=3 /UG=Rn.35513 /UG_TITLE=ESTs AI715411 Transmembrane protein 100 Tmem100 497979 NM_001017479 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1378090_at BE109128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109128 /DB_XREF=gi:8501233 /DB_XREF=UI-R-BS1-azb-c-07-0-UI.s1 /CLONE=UI-R-BS1-azb-c-07-0-UI /FEA=EST /CNT=4 /TID=Rn.7558.1 /TIER=ConsEnd /STK=3 /UG=Rn.7558 /UG_TITLE=ESTs BE109128 1378091_at AW528824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528824 /DB_XREF=gi:7171238 /DB_XREF=UI-R-BT1-akj-a-11-0-UI.s1 /CLONE=UI-R-BT1-akj-a-11-0-UI /FEA=EST /CNT=4 /TID=Rn.47021.1 /TIER=ConsEnd /STK=3 /UG=Rn.47021 /UG_TITLE=ESTs AW528824 1378092_at AI408718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408718 /DB_XREF=gi:4252222 /DB_XREF=EST237009 /CLONE=ROVEG06 /FEA=EST /CNT=4 /TID=Rn.19870.1 /TIER=ConsEnd /STK=3 /UG=Rn.19870 /UG_TITLE=ESTs, Weakly similar to YEW4_YEAST HYPOTHETICAL 20.4 KD PROTEIN IN GLC7-GDI1 INTERGENIC REGION (S.cerevisiae) AI408718 magnesium-dependent phosphatase 1 Mdp1 290230 NM_001106039 0030389 // fructosamine metabolic process // inferred from direct assay 0016791 // phosphatase activity // inferred from direct assay 1378093_at BG380366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380366 /DB_XREF=gi:13304838 /DB_XREF=UI-R-CT0-btw-c-09-0-UI.s1 /CLONE=UI-R-CT0-btw-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.41488.1 /TIER=ConsEnd /STK=3 /UG=Rn.41488 /UG_TITLE=ESTs BG380366 1378094_at BM389654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389654 /DB_XREF=gi:18189707 /DB_XREF=UI-R-CN1-cjo-k-21-0-UI.s1 /CLONE=UI-R-CN1-cjo-k-21-0-UI /FEA=EST /CNT=4 /TID=Rn.25492.1 /TIER=ConsEnd /STK=3 /UG=Rn.25492 /UG_TITLE=ESTs BM389654 1378095_at BI297467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297467 /DB_XREF=gi:14962871 /DB_XREF=UI-R-CV2-chc-f-05-0-UI.s1 /CLONE=UI-R-CV2-chc-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.41018.1 /TIER=ConsEnd /STK=3 /UG=Rn.41018 /UG_TITLE=ESTs BI297467 1378096_at AA924572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924572 /DB_XREF=gi:4235763 /DB_XREF=UI-R-A1-dz-h-08-0-UI.s1 /CLONE=UI-R-A1-dz-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.15347.1 /TIER=ConsEnd /STK=3 /UG=Rn.15347 /UG_TITLE=ESTs, Moderately similar to KINN RAT NEURONAL KINESIN HEAVY CHAIN (R.norvegicus) AA924572 kinesin family member 5B Kif5b 117550 NM_057202 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007028 // cytoplasm organization // inferred from electronic annotation /// 0007028 // cytoplasm organization // not recorded /// 0047496 // vesicle transport along microtubule // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0035253 // ciliary rootlet // inferred from electronic annotation /// 0035253 // ciliary rootlet // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0043227 // membrane-bounded organelle // inferred from electronic annotation /// 0043227 // membrane-bounded organelle // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from direct assay /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from direct assay 1378097_at AI599593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599593 /DB_XREF=gi:4608641 /DB_XREF=EST251296 /CLONE=REMEJ24 /FEA=EST /CNT=4 /TID=Rn.21452.1 /TIER=ConsEnd /STK=3 /UG=Rn.21452 /UG_TITLE=ESTs AI599593 1378098_at AI406802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406802 /DB_XREF=gi:4250306 /DB_XREF=EST235089 /CLONE=RBRDI38 /FEA=EST /CNT=4 /TID=Rn.9203.1 /TIER=ConsEnd /STK=3 /UG=Rn.9203 /UG_TITLE=ESTs AI406802 1378099_at AI412479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412479 /DB_XREF=gi:4255983 /DB_XREF=EST240778 /CLONE=RBRDO81 /FEA=EST /CNT=4 /TID=Rn.23008.1 /TIER=ConsEnd /STK=3 /UG=Rn.23008 /UG_TITLE=ESTs AI412479 1378100_at BG380660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380660 /DB_XREF=gi:13305132 /DB_XREF=UI-R-CT0-btz-h-08-0-UI.s1 /CLONE=UI-R-CT0-btz-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.20268.1 /TIER=ConsEnd /STK=3 /UG=Rn.20268 /UG_TITLE=ESTs BG380660 YEATS domain containing 4 Yeats4 299810 NM_001127527 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0043967 // histone H4 acetylation // inferred from electronic annotation /// 0043967 // histone H4 acetylation // not recorded /// 0043968 // histone H2A acetylation // inferred from electronic annotation /// 0043968 // histone H2A acetylation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0035267 // NuA4 histone acetyltransferase complex // inferred from electronic annotation /// 0035267 // NuA4 histone acetyltransferase complex // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded 1378101_at AI228404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228404 /DB_XREF=gi:3812291 /DB_XREF=EST225099 /CLONE=RBRCU30 /FEA=EST /CNT=4 /TID=Rn.24323.1 /TIER=ConsEnd /STK=3 /UG=Rn.24323 /UG_TITLE=ESTs AI228404 G substrate Gsbs 266705 NM_153467 0050790 // regulation of catalytic activity // not recorded 0004864 // phosphoprotein phosphatase inhibitor activity // not recorded /// 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from electronic annotation /// 0004865 // protein serine/threonine phosphatase inhibitor activity // inferred from electronic annotation /// 0004865 // protein serine/threonine phosphatase inhibitor activity // not recorded /// 0019212 // phosphatase inhibitor activity // inferred from direct assay 1378102_at AI502785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502785 /DB_XREF=gi:4400636 /DB_XREF=UI-R-C1-lc-e-05-0-UI.s1 /CLONE=UI-R-C1-lc-e-05-0-UI /FEA=EST /CNT=4 /TID=Rn.35485.1 /TIER=ConsEnd /STK=3 /UG=Rn.35485 /UG_TITLE=ESTs AI502785 pecanex-like 2 (Drosophila) Pcnxl2 307949 XM_001055579 /// XM_226571 0016021 // integral to membrane // inferred from electronic annotation 1378103_at AI406799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406799 /DB_XREF=gi:4250303 /DB_XREF=EST235086 /CLONE=RBRDI26 /FEA=EST /CNT=4 /TID=Rn.28786.1 /TIER=ConsEnd /STK=3 /UG=Rn.28786 /UG_TITLE=ESTs AI406799 1378104_at AI105459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105459 /DB_XREF=gi:3709535 /DB_XREF=EST214748 /CLONE=RKIBK68 /FEA=EST /CNT=4 /TID=Rn.23965.1 /TIER=ConsEnd /STK=3 /UG=Rn.23965 /UG_TITLE=ESTs AI105459 similar to RIKEN cDNA 8430406I07 RGD1307465 296200 NM_001009655 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1378105_at BF289201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289201 /DB_XREF=gi:11220271 /DB_XREF=EST453792 /CLONE=RGIHC28 /FEA=EST /CNT=4 /TID=Rn.25296.1 /TIER=ConsEnd /STK=3 /UG=Rn.25296 /UG_TITLE=ESTs BF289201 1378106_at AI029402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029402 /DB_XREF=gi:4298325 /DB_XREF=UI-R-C0-iw-d-11-0-UI.s1 /CLONE=UI-R-C0-iw-d-11-0-UI /FEA=EST /CNT=4 /TID=Rn.17288.1 /TIER=ConsEnd /STK=3 /UG=Rn.17288 /UG_TITLE=ESTs, Weakly similar to S58222 PQ-rich protein (H.sapiens) AI029402 pleckstrin homology-like domain, family A, member 2 Phlda2 293637 NM_001100521 /// NM_001170480 /// XM_001065824 /// XM_002725758 /// XM_002728847 /// XM_215132 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded 1378107_at AI146051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146051 /DB_XREF=gi:3667850 /DB_XREF=UI-R-BT0-qg-e-08-0-UI.s1 /CLONE=UI-R-BT0-qg-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.24020.1 /TIER=ConsEnd /STK=3 /UG=Rn.24020 /UG_TITLE=ESTs AI146051 1378108_at BF418979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418979 /DB_XREF=gi:11406968 /DB_XREF=UI-R-BJ2-bqm-b-07-0-UI.s1 /CLONE=UI-R-BJ2-bqm-b-07-0-UI /FEA=EST /CNT=4 /TID=Rn.64153.1 /TIER=ConsEnd /STK=3 /UG=Rn.64153 /UG_TITLE=ESTs BF418979 1378109_at BF285325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285325 /DB_XREF=gi:11216395 /DB_XREF=EST449916 /CLONE=RGIFD55 /FEA=EST /CNT=4 /TID=Rn.27974.1 /TIER=ConsEnd /STK=3 /UG=Rn.27974 /UG_TITLE=ESTs BF285325 1378110_at AI412190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412190 /DB_XREF=gi:4255694 /DB_XREF=EST240484 /CLONE=RKIEN17 /FEA=EST /CNT=4 /TID=Rn.36987.1 /TIER=ConsEnd /STK=3 /UG=Rn.36987 /UG_TITLE=ESTs AI412190 1378111_at AI576002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576002 /DB_XREF=gi:4560378 /DB_XREF=UI-R-G0-ur-e-07-0-UI.s2 /CLONE=UI-R-G0-ur-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.38662.1 /TIER=ConsEnd /STK=3 /UG=Rn.38662 /UG_TITLE=ESTs AI576002 1378112_at BI304019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI304019 /DB_XREF=gi:14980299 /DB_XREF=UI-R-DR0-cjc-e-04-0-UI.s1 /CLONE=UI-R-DR0-cjc-e-04-0-UI /FEA=EST /CNT=4 /TID=Rn.47873.1 /TIER=ConsEnd /STK=3 /UG=Rn.47873 /UG_TITLE=ESTs BI304019 MYST histone acetyltransferase (monocytic leukemia) 3 Myst3 306571 NM_001100570 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016573 // histone acetylation // not recorded /// 0016573 // histone acetylation // inferred from sequence or structural similarity /// 0016573 // histone acetylation // inferred from electronic annotation /// 0030099 // myeloid cell differentiation // not recorded /// 0030099 // myeloid cell differentiation // inferred from sequence or structural similarity /// 0030099 // myeloid cell differentiation // inferred from electronic annotation /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0035019 // somatic stem cell maintenance // not recorded /// 0035162 // embryonic hemopoiesis // inferred from electronic annotation /// 0035162 // embryonic hemopoiesis // not recorded /// 0043966 // histone H3 acetylation // not recorded /// 0043966 // histone H3 acetylation // inferred from sequence or structural similarity /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0070776 // MOZ/MORF histone acetyltransferase complex // not recorded /// 0070776 // MOZ/MORF histone acetyltransferase complex // inferred from sequence or structural similarity /// 0070776 // MOZ/MORF histone acetyltransferase complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // not recorded /// 0004402 // histone acetyltransferase activity // inferred from sequence or structural similarity /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from sequence or structural similarity /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016407 // acetyltransferase activity // not recorded /// 0016407 // acetyltransferase activity // inferred from sequence or structural similarity /// 0016407 // acetyltransferase activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378113_at BE113172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113172 /DB_XREF=gi:8505277 /DB_XREF=UI-R-BJ1-awc-d-02-0-UI.s1 /CLONE=UI-R-BJ1-awc-d-02-0-UI /FEA=EST /CNT=4 /TID=Rn.20331.1 /TIER=ConsEnd /STK=3 /UG=Rn.20331 /UG_TITLE=ESTs BE113172 1378114_at BF415965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415965 /DB_XREF=gi:11403954 /DB_XREF=UI-R-CA0-bkp-d-10-0-UI.s1 /CLONE=UI-R-CA0-bkp-d-10-0-UI /FEA=EST /CNT=4 /TID=Rn.62883.1 /TIER=ConsEnd /STK=3 /UG=Rn.62883 /UG_TITLE=ESTs BF415965 1378115_at AW533316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533316 /DB_XREF=gi:7175730 /DB_XREF=UI-R-BU0-anf-d-11-0-UI.s1 /CLONE=UI-R-BU0-anf-d-11-0-UI /FEA=EST /CNT=4 /TID=Rn.21837.1 /TIER=ConsEnd /STK=3 /UG=Rn.21837 /UG_TITLE=ESTs AW533316 1378116_at BI289556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289556 /DB_XREF=gi:14947248 /DB_XREF=UI-R-DK0-cff-d-11-0-UI.s1 /CLONE=UI-R-DK0-cff-d-11-0-UI /FEA=EST /CNT=4 /TID=Rn.15280.1 /TIER=ConsEnd /STK=3 /UG=Rn.15280 /UG_TITLE=ESTs, Weakly similar to T08725 probable finger protein DKFZp566F123.1 (H.sapiens) BI289556 zinc finger and BTB domain containing 45 Zbtb45 308366 NM_001107478 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378117_at BF396269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396269 /DB_XREF=gi:11381241 /DB_XREF=UI-R-BS2-bdw-c-01-0-UI.s1 /CLONE=UI-R-BS2-bdw-c-01-0-UI /FEA=EST /CNT=4 /TID=Rn.64470.1 /TIER=ConsEnd /STK=3 /UG=Rn.64470 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) BF396269 1378118_at BI285675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285675 /DB_XREF=gi:14939559 /DB_XREF=UI-R-CT0s-cas-b-11-0-UI.s1 /CLONE=UI-R-CT0s-cas-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.33615.1 /TIER=ConsEnd /STK=3 /UG=Rn.33615 /UG_TITLE=ESTs BI285675 1378119_at BG381574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381574 /DB_XREF=gi:13306046 /DB_XREF=UI-R-CT0-buk-h-02-0-UI.s1 /CLONE=UI-R-CT0-buk-h-02-0-UI /FEA=EST /CNT=4 /TID=Rn.46832.1 /TIER=ConsEnd /STK=3 /UG=Rn.46832 /UG_TITLE=ESTs BG381574 zinc finger CCCH type containing 8 Zc3h8 311414 NM_001012090 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0033085 // negative regulation of T cell differentiation in thymus // inferred from electronic annotation /// 0033085 // negative regulation of T cell differentiation in thymus // not recorded /// 0043029 // T cell homeostasis // inferred from electronic annotation /// 0043029 // T cell homeostasis // not recorded /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0046677 // response to antibiotic // not recorded /// 0070245 // positive regulation of thymocyte apoptosis // inferred from electronic annotation /// 0070245 // positive regulation of thymocyte apoptosis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1378120_at BI280303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280303 /DB_XREF=gi:14928952 /DB_XREF=UI-R-DE0-cag-d-02-0-UI.s1 /CLONE=UI-R-DE0-cag-d-02-0-UI /FEA=EST /CNT=4 /TID=Rn.80046.1 /TIER=ConsEnd /STK=3 /UG=Rn.80046 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BI280303 mRNA turnover 4 homolog (S. cerevisiae) Mrto4 298586 NM_001106697 0042254 // ribosome biogenesis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 1378121_at AI600165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600165 /DB_XREF=gi:4609213 /DB_XREF=EST251868 /CLONE=REMDZ60 /FEA=EST /CNT=4 /TID=Rn.40525.1 /TIER=ConsEnd /STK=3 /UG=Rn.40525 /UG_TITLE=ESTs AI600165 1378122_a_at BI285319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285319 /DB_XREF=gi:14938833 /DB_XREF=UI-R-DB0-byy-f-09-0-UI.s1 /CLONE=UI-R-DB0-byy-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.23192.1 /TIER=ConsEnd /STK=3 /UG=Rn.23192 /UG_TITLE=ESTs BI285319 1378123_x_at BI285319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285319 /DB_XREF=gi:14938833 /DB_XREF=UI-R-DB0-byy-f-09-0-UI.s1 /CLONE=UI-R-DB0-byy-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.23192.1 /TIER=ConsEnd /STK=3 /UG=Rn.23192 /UG_TITLE=ESTs BI285319 1378124_at AI501282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501282 /DB_XREF=gi:4399133 /DB_XREF=UI-R-C2p-ru-a-02-0-UI.s1 /CLONE=UI-R-C2p-ru-a-02-0-UI /FEA=EST /CNT=4 /TID=Rn.30615.1 /TIER=ConsEnd /STK=3 /UG=Rn.30615 /UG_TITLE=ESTs AI501282 protein phosphatase 1B, magnesium dependent, beta isoform Ppm1b 24667 NM_033096 0006470 // protein dephosphorylation // inferred from electronic annotation 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378125_at AA998621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998621 /DB_XREF=gi:4291118 /DB_XREF=UI-R-C0-if-e-03-0-UI.s1 /CLONE=UI-R-C0-if-e-03-0-UI /FEA=EST /CNT=4 /TID=Rn.23313.1 /TIER=ConsEnd /STK=3 /UG=Rn.23313 /UG_TITLE=ESTs AA998621 WD repeat domain 91 Wdr91 312225 NM_001127298 1378126_at BE111592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111592 /DB_XREF=gi:8503697 /DB_XREF=UI-R-BJ1-avc-e-12-0-UI.s1 /CLONE=UI-R-BJ1-avc-e-12-0-UI /FEA=EST /CNT=4 /TID=Rn.27873.1 /TIER=ConsEnd /STK=3 /UG=Rn.27873 /UG_TITLE=ESTs BE111592 DENN/MADD domain containing 2A Dennd2a 312257 XM_001070028 /// XM_002726347 /// XM_002729307 /// XM_231654 1378127_at BF420355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420355 /DB_XREF=gi:11408344 /DB_XREF=UI-R-BJ2-bpl-h-10-0-UI.s1 /CLONE=UI-R-BJ2-bpl-h-10-0-UI /FEA=EST /CNT=4 /TID=Rn.63702.1 /TIER=ConsEnd /STK=3 /UG=Rn.63702 /UG_TITLE=ESTs BF420355 cullin 2 Cul2 361258 NM_001108417 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0030163 // protein catabolic process // not recorded 0030891 // VCB complex // inferred from direct assay /// 0031461 // cullin-RING ubiquitin ligase complex // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred by curator /// 0005515 // protein binding // inferred by curator /// 0005515 // protein binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation 1378128_at BM383749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383749 /DB_XREF=gi:18183802 /DB_XREF=UI-R-DM1-ckb-o-19-0-UI.s1 /CLONE=UI-R-DM1-ckb-o-19-0-UI /FEA=EST /CNT=4 /TID=Rn.81915.1 /TIER=ConsEnd /STK=3 /UG=Rn.81915 /UG_TITLE=ESTs BM383749 1378129_a_at BF408350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408350 /DB_XREF=gi:11396325 /DB_XREF=UI-R-BJ2-brb-g-08-0-UI.s1 /CLONE=UI-R-BJ2-brb-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.3448.1 /TIER=ConsEnd /STK=3 /UG=Rn.3448 /UG_TITLE=ESTs BF408350 1378130_at AI145935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145935 /DB_XREF=gi:3667734 /DB_XREF=UI-R-BT0-qc-c-01-0-UI.s1 /CLONE=UI-R-BT0-qc-c-01-0-UI /FEA=EST /CNT=4 /TID=Rn.28670.1 /TIER=ConsEnd /STK=3 /UG=Rn.28670 /UG_TITLE=ESTs AI145935 ring finger protein, transmembrane 2 Rnft2 304521 NM_001107144 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378131_at AI045015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045015 /DB_XREF=gi:3291834 /DB_XREF=UI-R-C1-ke-h-12-0-UI.s1 /CLONE=UI-R-C1-ke-h-12-0-UI /FEA=EST /CNT=4 /TID=Rn.16082.1 /TIER=ConsEnd /STK=3 /UG=Rn.16082 /UG_TITLE=ESTs AI045015 1378132_at AI716098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716098 /DB_XREF=gi:5033399 /DB_XREF=UI-R-Y0-abd-f-04-0-UI.s1 /CLONE=UI-R-Y0-abd-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.38223.1 /TIER=ConsEnd /STK=3 /UG=Rn.38223 /UG_TITLE=ESTs AI716098 1378133_at AW532618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532618 /DB_XREF=gi:7174997 /DB_XREF=UI-R-BS0-amp-e-09-0-UI.s1 /CLONE=UI-R-BS0-amp-e-09-0-UI /FEA=EST /CNT=4 /TID=Rn.38677.1 /TIER=ConsEnd /STK=3 /UG=Rn.38677 /UG_TITLE=ESTs AW532618 solute carrier family 7 (cationic amino acid transporter, y+ system), member 11 Slc7a11 310392 NM_001107673 0006810 // transport // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0007420 // brain development // inferred from expression pattern /// 0009636 // response to toxin // not recorded /// 0035094 // response to nicotine // inferred from expression pattern /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070306 // lens fiber cell differentiation // inferred from expression pattern 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005856 // cytoskeleton // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation 1378134_at BI291629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291629 /DB_XREF=gi:14951353 /DB_XREF=UI-R-DN0-ciu-j-03-0-UI.s1 /CLONE=UI-R-DN0-ciu-j-03-0-UI /FEA=EST /CNT=4 /TID=Rn.6957.1 /TIER=ConsEnd /STK=3 /UG=Rn.6957 /UG_TITLE=ESTs BI291629 1378135_at AI710574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI710574 /DB_XREF=gi:5000350 /DB_XREF=UI-R-AG1-aal-g-01-0-UI.s1 /CLONE=UI-R-AG1-aal-g-01-0-UI /FEA=EST /CNT=4 /TID=Rn.41204.1 /TIER=ConsEnd /STK=3 /UG=Rn.41204 /UG_TITLE=ESTs AI710574 1378136_at BF403749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403749 /DB_XREF=gi:11391724 /DB_XREF=UI-R-CA1-bjc-f-16-0-UI.s1 /CLONE=UI-R-CA1-bjc-f-16-0-UI /FEA=EST /CNT=4 /TID=Rn.17697.1 /TIER=ConsEnd /STK=3 /UG=Rn.17697 /UG_TITLE=ESTs, Weakly similar to LAT2_RAT LARGE NEUTRAL AMINO ACIDS TRANSPORTER SMALL SUBUNIT 2 (L-TYPE AMINO ACID TRANSPORTER 2) (R.norvegicus) BF403749 low density lipoprotein receptor-related protein 3 Lrp3 89787 NM_053541 0006897 // endocytosis // inferred from electronic annotation 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1378137_at BG379788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379788 /DB_XREF=gi:13304255 /DB_XREF=UI-R-CS0-btn-b-08-0-UI.s1 /CLONE=UI-R-CS0-btn-b-08-0-UI /FEA=EST /CNT=4 /TID=Rn.45099.1 /TIER=ConsEnd /STK=3 /UG=Rn.45099 /UG_TITLE=ESTs, Highly similar to S36779 ribosome-binding protein p34 - rat (R.norvegicus) BG379788 leucine rich repeat containing 59 Lrrc59 287633 NM_001008280 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378138_at BI296233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296233 /DB_XREF=gi:14960470 /DB_XREF=UI-R-DK0-cex-h-09-0-UI.s1 /CLONE=UI-R-DK0-cex-h-09-0-UI /FEA=EST /CNT=4 /TID=Rn.21531.1 /TIER=ConsEnd /STK=3 /UG=Rn.21531 /UG_TITLE=ESTs BI296233 1378139_at AI412468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412468 /DB_XREF=gi:4255972 /DB_XREF=EST240767 /CLONE=RBRDO89 /FEA=EST /CNT=4 /TID=Rn.22289.1 /TIER=ConsEnd /STK=3 /UG=Rn.22289 /UG_TITLE=ESTs AI412468 1378140_at BI296317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296317 /DB_XREF=gi:14960637 /DB_XREF=UI-R-DK0-cez-a-04-0-UI.s1 /CLONE=UI-R-DK0-cez-a-04-0-UI /FEA=EST /CNT=4 /TID=Rn.23090.1 /TIER=ConsEnd /STK=3 /UG=Rn.23090 /UG_TITLE=ESTs BI296317 ADP-ribosylation factor-like 11 Arl11 364396 NM_001013433 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1378141_at AI556445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556445 /DB_XREF=gi:4488808 /DB_XREF=UI-R-C2p-rh-f-09-0-UI.s1 /CLONE=UI-R-C2p-rh-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.39065.1 /TIER=ConsEnd /STK=3 /UG=Rn.39065 /UG_TITLE=ESTs AI556445 1378142_at BF396154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396154 /DB_XREF=gi:11381126 /DB_XREF=UI-R-CA1-bcb-h-08-0-UI.s1 /CLONE=UI-R-CA1-bcb-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.59565.1 /TIER=ConsEnd /STK=3 /UG=Rn.59565 /UG_TITLE=ESTs BF396154 1378143_at AI170625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170625 /DB_XREF=gi:3710665 /DB_XREF=EST216559 /CLONE=RMUAZ16 /FEA=EST /CNT=4 /TID=Rn.8829.1 /TIER=ConsEnd /STK=3 /UG=Rn.8829 /UG_TITLE=ESTs AI170625 1378144_at BI296384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296384 /DB_XREF=gi:14960755 /DB_XREF=UI-R-DK0-cez-g-04-0-UI.s1 /CLONE=UI-R-DK0-cez-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.21560.1 /TIER=ConsEnd /STK=3 /UG=Rn.21560 /UG_TITLE=ESTs BI296384 KN motif and ankyrin repeat domains 4 Kank4 313385 NM_001107947 1378145_at BE113971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113971 /DB_XREF=gi:8506076 /DB_XREF=UI-R-BJ1-awi-e-10-0-UI.s1 /CLONE=UI-R-BJ1-awi-e-10-0-UI /FEA=EST /CNT=4 /TID=Rn.45322.1 /TIER=ConsEnd /STK=3 /UG=Rn.45322 /UG_TITLE=ESTs BE113971 1378146_at BG380860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380860 /DB_XREF=gi:13305332 /DB_XREF=UI-R-CT0-buc-c-06-0-UI.s1 /CLONE=UI-R-CT0-buc-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.46448.1 /TIER=ConsEnd /STK=3 /UG=Rn.46448 /UG_TITLE=ESTs BG380860 TBC1 domain family, member 24 Tbc1d24 287110 NM_001105769 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1378147_at BE109576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109576 /DB_XREF=gi:8501681 /DB_XREF=UI-R-BJ1-avp-g-03-0-UI.s1 /CLONE=UI-R-BJ1-avp-g-03-0-UI /FEA=EST /CNT=4 /TID=Rn.19330.1 /TIER=ConsEnd /STK=3 /UG=Rn.19330 /UG_TITLE=ESTs, Moderately similar to T17285 hypothetical protein DKFZp434N0535.1 (H.sapiens) BE109576 similar to mKIAA0978 protein RGD1561878 311553 XM_002726270 /// XM_002729218 1378148_at BF390618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390618 /DB_XREF=gi:11375465 /DB_XREF=UI-R-CA1-bck-c-03-0-UI.s1 /CLONE=UI-R-CA1-bck-c-03-0-UI /FEA=EST /CNT=4 /TID=Rn.24371.1 /TIER=ConsEnd /STK=3 /UG=Rn.24371 /UG_TITLE=ESTs BF390618 1378149_at BE097616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097616 /DB_XREF=gi:8488547 /DB_XREF=UI-R-BO1-apz-g-03-0-UI.s1 /CLONE=UI-R-BO1-apz-g-03-0-UI /FEA=EST /CNT=4 /TID=Rn.49113.1 /TIER=ConsEnd /STK=3 /UG=Rn.49113 /UG_TITLE=ESTs, Moderately similar to H58 PROTEIN (M.musculus) BE097616 vacuolar protein sorting 26 homolog B (S. pombe) Vps26b 300472 NM_001106809 0007034 // vacuolar transport // inferred from electronic annotation 0030904 // retromer complex // inferred from electronic annotation 1378150_at AA945727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945727 /DB_XREF=gi:4132588 /DB_XREF=EST201226 /CLONE=RLUAS46 /FEA=EST /CNT=4 /TID=Rn.7904.1 /TIER=ConsEnd /STK=3 /UG=Rn.7904 /UG_TITLE=ESTs AA945727 caspase recruitment domain family, member 11 LOC100363332 100363332 XM_002727946 0042981 // regulation of apoptosis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1378151_at BE114019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114019 /DB_XREF=gi:8506124 /DB_XREF=UI-R-CA0-axn-b-02-0-UI.s1 /CLONE=UI-R-CA0-axn-b-02-0-UI /FEA=EST /CNT=4 /TID=Rn.49054.1 /TIER=ConsEnd /STK=3 /UG=Rn.49054 /UG_TITLE=ESTs BE114019 1378152_at AI170349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170349 /DB_XREF=gi:3710389 /DB_XREF=EST216275 /CLONE=RLUCH23 /FEA=EST /CNT=4 /TID=Rn.46837.1 /TIER=ConsEnd /STK=3 /UG=Rn.46837 /UG_TITLE=ESTs AI170349 1378153_at AI715156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715156 /DB_XREF=gi:5032409 /DB_XREF=UI-R-Y0-abn-a-05-0-UI.s1 /CLONE=UI-R-Y0-abn-a-05-0-UI /FEA=EST /CNT=4 /TID=Rn.40971.1 /TIER=ConsEnd /STK=3 /UG=Rn.40971 /UG_TITLE=ESTs AI715156 1378154_at BG668499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668499 /DB_XREF=gi:13890421 /DB_XREF=DRA06G10 /CLONE=DRA06G10 /FEA=EST /CNT=4 /TID=Rn.15170.1 /TIER=ConsEnd /STK=3 /UG=Rn.15170 /UG_TITLE=ESTs BG668499 1378155_at BI289641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289641 /DB_XREF=gi:14947418 /DB_XREF=UI-R-DK0-cfi-d-05-0-UI.s1 /CLONE=UI-R-DK0-cfi-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.23673.1 /TIER=ConsEnd /STK=3 /UG=Rn.23673 /UG_TITLE=ESTs, Weakly similar to S36152 MHC class III histocompatibility antigen HLA-B-associated protein 2 (H.sapiens) BI289641 BAT2 domain containing 1 Bat2d1 360865 XM_002724884 /// XM_341141 0008022 // protein C-terminus binding // not recorded 1378156_at BE109002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109002 /DB_XREF=gi:8501107 /DB_XREF=UI-R-BS1-aza-h-04-0-UI.s1 /CLONE=UI-R-BS1-aza-h-04-0-UI /FEA=EST /CNT=4 /TID=Rn.17018.1 /TIER=ConsEnd /STK=3 /UG=Rn.17018 /UG_TITLE=ESTs BE109002 cystin 1 Cys1 690489 NM_001109597 0005932 // microtubule basal body // not recorded /// 0035085 // cilium axoneme // not recorded 1378157_at BE111853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111853 /DB_XREF=gi:8503958 /DB_XREF=UI-R-BJ1-avz-e-12-0-UI.s1 /CLONE=UI-R-BJ1-avz-e-12-0-UI /FEA=EST /CNT=4 /TID=Rn.49879.1 /TIER=ConsEnd /STK=3 /UG=Rn.49879 /UG_TITLE=ESTs BE111853 1378158_at BF408114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408114 /DB_XREF=gi:11396089 /DB_XREF=UI-R-BJ2-bqz-h-04-0-UI.s1 /CLONE=UI-R-BJ2-bqz-h-04-0-UI /FEA=EST /CNT=4 /TID=Rn.32678.1 /TIER=ConsEnd /STK=3 /UG=Rn.32678 /UG_TITLE=ESTs BF408114 breast cancer metastasis-suppressor 1 Brms1 293668 NM_001009605 0009987 // cellular process // inferred from electronic annotation /// 0009987 // cellular process // not recorded 0005515 // protein binding // not recorded 1378159_at BF391007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391007 /DB_XREF=gi:11375854 /DB_XREF=UI-R-CA1-bcf-b-03-0-UI.s1 /CLONE=UI-R-CA1-bcf-b-03-0-UI /FEA=EST /CNT=4 /TID=Rn.62854.1 /TIER=ConsEnd /STK=3 /UG=Rn.62854 /UG_TITLE=ESTs BF391007 1378160_at AI179412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179412 /DB_XREF=gi:3730050 /DB_XREF=EST223116 /CLONE=RSPCG93 /FEA=EST /CNT=4 /TID=Rn.23788.1 /TIER=ConsEnd /STK=3 /UG=Rn.23788 /UG_TITLE=ESTs AI179412 ferric-chelate reductase 1 Frrs1 310810 XM_001073918 /// XM_227622 0006548 // histidine catabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0000293 // ferric-chelate reductase activity // not recorded /// 0004500 // dopamine beta-monooxygenase activity // inferred from electronic annotation 1378161_at BF386703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386703 /DB_XREF=gi:11371527 /DB_XREF=UI-R-CA1-bbg-e-03-0-UI.s1 /CLONE=UI-R-CA1-bbg-e-03-0-UI /FEA=EST /CNT=4 /TID=Rn.61415.1 /TIER=ConsEnd /STK=3 /UG=Rn.61415 /UG_TITLE=ESTs BF386703 1378162_at AI045884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045884 /DB_XREF=gi:3292703 /DB_XREF=UI-R-C0-jq-c-02-0-UI.s2 /CLONE=UI-R-C0-jq-c-02-0-UI /FEA=EST /CNT=4 /TID=Rn.16338.1 /TIER=ConsEnd /STK=3 /UG=Rn.16338 /UG_TITLE=ESTs AI045884 1378163_at AA817956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817956 /DB_XREF=gi:4198479 /DB_XREF=UI-R-A0-ag-f-05-0-UI.s1 /CLONE=UI-R-A0-ag-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.16419.1 /TIER=ConsEnd /STK=3 /UG=Rn.16419 /UG_TITLE=ESTs AA817956 gremlin 2, cysteine knot superfamily, homolog (Xenopus laevis) Grem2 289264 NM_001105974 0030509 // BMP signaling pathway // not recorded 0005576 // extracellular region // not recorded 1378164_at AI227601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227601 /DB_XREF=gi:3811497 /DB_XREF=EST224305 /CLONE=RBRCJ24 /FEA=EST /CNT=4 /TID=Rn.38773.1 /TIER=ConsEnd /STK=3 /UG=Rn.38773 /UG_TITLE=ESTs AI227601 1378165_at BF420349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420349 /DB_XREF=gi:11408338 /DB_XREF=UI-R-BJ2-bpl-h-04-0-UI.s1 /CLONE=UI-R-BJ2-bpl-h-04-0-UI /FEA=EST /CNT=4 /TID=Rn.35420.1 /TIER=ConsEnd /STK=3 /UG=Rn.35420 /UG_TITLE=ESTs BF420349 twist homolog 1 (Drosophila) Twist1 85489 NM_053530 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0001843 // neural tube closure // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0035115 // embryonic forelimb morphogenesis // not recorded /// 0035115 // embryonic forelimb morphogenesis // inferred from electronic annotation /// 0035137 // hindlimb morphogenesis // not recorded /// 0035137 // hindlimb morphogenesis // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045843 // negative regulation of striated muscle tissue development // not recorded /// 0045843 // negative regulation of striated muscle tissue development // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0060363 // cranial suture morphogenesis // not recorded /// 0060363 // cranial suture morphogenesis // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0070888 // E-box binding // not recorded /// 0070888 // E-box binding // inferred from electronic annotation 1378166_at BE096995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096995 /DB_XREF=gi:8487926 /DB_XREF=UI-R-BS0-aoh-c-12-0-UI.s1 /CLONE=UI-R-BS0-aoh-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.53910.1 /TIER=ConsEnd /STK=3 /UG=Rn.53910 /UG_TITLE=ESTs BE096995 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) Rtf1 366169 NM_001108958 0006352 // transcription initiation // inferred from electronic annotation /// 0016570 // histone modification // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378167_at AI599898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599898 /DB_XREF=gi:4608946 /DB_XREF=EST251601 /CLONE=REMEL59 /FEA=EST /CNT=4 /TID=Rn.35459.1 /TIER=ConsEnd /STK=3 /UG=Rn.35459 /UG_TITLE=ESTs AI599898 1378168_at BG377391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377391 /DB_XREF=gi:13301863 /DB_XREF=UI-R-CU0-bvc-h-08-0-UI.s1 /CLONE=UI-R-CU0-bvc-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.20933.1 /TIER=ConsEnd /STK=3 /UG=Rn.20933 /UG_TITLE=ESTs BG377391 family with sequence similarity 101, member B Fam101b 287534 NM_001007611 1378169_at BI295569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295569 /DB_XREF=gi:14959148 /DB_XREF=UI-R-DK0-cev-h-09-0-UI.s1 /CLONE=UI-R-DK0-cev-h-09-0-UI /FEA=EST /CNT=4 /TID=Rn.60585.1 /TIER=ConsEnd /STK=3 /UG=Rn.60585 /UG_TITLE=ESTs, Moderately similar to CTE1 RAT CYTOSOLIC ACYL COENZYME A THIOESTER HYDROLASE, INDUCIBLE (R.norvegicus) BI295569 acyl-CoA thioesterase 3 Acot3 314304 NM_001108041 0000038 // very long-chain fatty acid metabolic process // not recorded /// 0001676 // long-chain fatty acid metabolic process // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006637 // acyl-CoA metabolic process // inferred from electronic annotation /// 0006637 // acyl-CoA metabolic process // not recorded /// 0032788 // saturated monocarboxylic acid metabolic process // not recorded /// 0032789 // unsaturated monocarboxylic acid metabolic process // not recorded 0005829 // cytosol // not recorded 0016290 // palmitoyl-CoA hydrolase activity // inferred from electronic annotation /// 0016291 // acyl-CoA thioesterase activity // not recorded /// 0016790 // thiolester hydrolase activity // inferred from electronic annotation 1378170_at AI556957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556957 /DB_XREF=gi:4489320 /DB_XREF=UI-R-C2p-rp-h-09-0-UI.s1 /CLONE=UI-R-C2p-rp-h-09-0-UI /FEA=EST /CNT=4 /TID=Rn.38229.1 /TIER=ConsEnd /STK=3 /UG=Rn.38229 /UG_TITLE=ESTs AI556957 AF4/FMR2 family, member 4 Aff4 303132 NM_001107001 0007286 // spermatid development // not recorded 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1378171_at BF409060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409060 /DB_XREF=gi:11397035 /DB_XREF=UI-R-BT1-bkl-e-08-0-UI.s1 /CLONE=UI-R-BT1-bkl-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.49567.1 /TIER=ConsEnd /STK=3 /UG=Rn.49567 /UG_TITLE=ESTs BF409060 1378172_at AI008119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008119 /DB_XREF=gi:4132858 /DB_XREF=EST202570 /CLONE=REMAT16 /FEA=EST /CNT=4 /TID=Rn.13383.2 /TIER=ConsEnd /STK=3 /UG=Rn.13383 /UG_TITLE=ESTs AI008119 1378173_at BF397791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397791 /DB_XREF=gi:11382775 /DB_XREF=UI-R-BS2-bee-f-11-0-UI.s1 /CLONE=UI-R-BS2-bee-f-11-0-UI /FEA=EST /CNT=4 /TID=Rn.58899.1 /TIER=ConsEnd /STK=3 /UG=Rn.58899 /UG_TITLE=ESTs BF397791 1378174_at BI274989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274989 /DB_XREF=gi:14886421 /DB_XREF=UI-R-CX0-bwt-d-05-0-UI.s1 /CLONE=UI-R-CX0-bwt-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.20685.1 /TIER=ConsEnd /STK=3 /UG=Rn.20685 /UG_TITLE=ESTs BI274989 1378175_at AW921557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921557 /DB_XREF=gi:8087381 /DB_XREF=EST352861 /CLONE=RGIIA75 /FEA=EST /CNT=4 /TID=Rn.30327.1 /TIER=ConsEnd /STK=3 /UG=Rn.30327 /UG_TITLE=ESTs AW921557 1378176_at AW531422 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531422 /DB_XREF=gi:7173836 /DB_XREF=UI-R-BS0-amm-g-08-0-UI.s1 /CLONE=UI-R-BS0-amm-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.34758.1 /TIER=ConsEnd /STK=3 /UG=Rn.34758 /UG_TITLE=ESTs AW531422 1378177_at BM385007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385007 /DB_XREF=gi:18185060 /DB_XREF=UI-R-CN1-cjm-g-12-0-UI.s2 /CLONE=UI-R-CN1-cjm-g-12-0-UI /FEA=EST /CNT=4 /TID=Rn.18501.1 /TIER=ConsEnd /STK=3 /UG=Rn.18501 /UG_TITLE=ESTs, Weakly similar to 2210253A HIRA protein (M.musculus) BM385007 similar to gem (nuclear organelle) associated protein 5 LOC691231 691231 NM_001172089 /// XM_002724496 /// XM_002727742 1378178_at AA850777 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850777 /DB_XREF=gi:2938317 /DB_XREF=EST193545 /CLONE=ROVAK65 /FEA=EST /CNT=4 /TID=Rn.7047.1 /TIER=ConsEnd /STK=3 /UG=Rn.7047 /UG_TITLE=ESTs AA850777 structural maintenance of chromosomes 6 Smc6 313961 NM_001108014 0005622 // intracellular // not recorded /// 0005694 // chromosome // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation 1378179_a_at AW524864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524864 /DB_XREF=gi:7167249 /DB_XREF=UI-R-BO0-aid-b-09-0-UI.s1 /CLONE=UI-R-BO0-aid-b-09-0-UI /FEA=EST /CNT=4 /TID=Rn.48641.1 /TIER=ConsEnd /STK=3 /UG=Rn.48641 /UG_TITLE=ESTs AW524864 lipoma HMGIC fusion partner-like 2 Lhfpl2 294643 NM_001106402 1378180_at BI284767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284767 /DB_XREF=gi:14937739 /DB_XREF=UI-R-CX0s-ccs-a-01-0-UI.s1 /CLONE=UI-R-CX0s-ccs-a-01-0-UI /FEA=EST /CNT=4 /TID=Rn.54353.1 /TIER=ConsEnd /STK=3 /UG=Rn.54353 /UG_TITLE=ESTs BI284767 dCMP deaminase Dctd 290741 NM_001013882 /// NM_001161512 0009165 // nucleotide biosynthetic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004132 // dCMP deaminase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378181_at BI279714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279714 /DB_XREF=gi:14927792 /DB_XREF=UI-R-DE0-caf-g-12-0-UI.s1 /CLONE=UI-R-DE0-caf-g-12-0-UI /FEA=EST /CNT=4 /TID=Rn.23660.1 /TIER=ConsEnd /STK=3 /UG=Rn.23660 /UG_TITLE=ESTs BI279714 ribonuclease P 40 subunit (human) Rpp40 291071 NM_001013055 0008033 // tRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0004526 // ribonuclease P activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1378182_at BI288560 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288560 /DB_XREF=gi:14945267 /DB_XREF=UI-R-DK0-cdg-c-11-0-UI.s1 /CLONE=UI-R-DK0-cdg-c-11-0-UI /FEA=EST /CNT=4 /TID=Rn.30689.1 /TIER=ConsEnd /STK=3 /UG=Rn.30689 /UG_TITLE=ESTs BI288560 1378183_at AW531387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531387 /DB_XREF=gi:7173801 /DB_XREF=UI-R-BS0-amm-c-12-0-UI.s1 /CLONE=UI-R-BS0-amm-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.23491.1 /TIER=ConsEnd /STK=3 /UG=Rn.23491 /UG_TITLE=ESTs AW531387 1378184_at AI012281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012281 /DB_XREF=gi:3226113 /DB_XREF=EST206732 /CLONE=RPLAU91 /FEA=EST /CNT=4 /TID=Rn.24176.1 /TIER=ConsEnd /STK=3 /UG=Rn.24176 /UG_TITLE=ESTs AI012281 Cd200 receptor 2 Cd200r2 501779 XM_001067018 /// XM_577181 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1378185_at AW528873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528873 /DB_XREF=gi:7171287 /DB_XREF=UI-R-BT1-akj-f-02-0-UI.s1 /CLONE=UI-R-BT1-akj-f-02-0-UI /FEA=EST /CNT=4 /TID=Rn.30120.1 /TIER=ConsEnd /STK=3 /UG=Rn.30120 /UG_TITLE=ESTs, Moderately similar to A Chain A, Structural Basis For The Recognition Of A Nucleoporin Fg- Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Nuclear Export Factor (H.sapiens) AW528873 nuclear transport factor 2-like export factor 2 Nxt2 315352 NM_001108120 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378186_at BF408466 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408466 /DB_XREF=gi:11396441 /DB_XREF=UI-R-BJ2-bre-b-01-0-UI.s1 /CLONE=UI-R-BJ2-bre-b-01-0-UI /FEA=EST /CNT=4 /TID=Rn.52470.1 /TIER=ConsEnd /STK=3 /UG=Rn.52470 /UG_TITLE=ESTs, Weakly similar to kinesin family member 3C (Rattus norvegicus) (R.norvegicus) BF408466 Kinesin family member 21A Kif21a 300158 NM_001106790 0007018 // microtubule-based movement // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1378187_at BF420102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420102 /DB_XREF=gi:11408091 /DB_XREF=UI-R-BJ2-bpm-h-10-0-UI.s1 /CLONE=UI-R-BJ2-bpm-h-10-0-UI /FEA=EST /CNT=4 /TID=Rn.64116.1 /TIER=ConsEnd /STK=3 /UG=Rn.64116 /UG_TITLE=ESTs BF420102 DnaJ (Hsp40) homolog, subfamily C, member 7 Dnajc7 303536 NM_213625 0070389 // chaperone cofactor-dependent protein refolding // inferred from electronic annotation /// 0070389 // chaperone cofactor-dependent protein refolding // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005488 // binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // not recorded 1378188_at BE102810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102810 /DB_XREF=gi:8494909 /DB_XREF=UI-R-BT1-aqt-e-07-0-UI.s1 /CLONE=UI-R-BT1-aqt-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.37603.1 /TIER=ConsEnd /STK=3 /UG=Rn.37603 /UG_TITLE=ESTs BE102810 1378189_at AA852047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA852047 /DB_XREF=gi:2939587 /DB_XREF=EST194816 /CLONE=RSPAP86 /FEA=EST /CNT=4 /TID=Rn.41374.1 /TIER=ConsEnd /STK=3 /UG=Rn.41374 /UG_TITLE=ESTs, Weakly similar to RENAL TRANSCRIPTION FACTOR KID-1 (R.norvegicus) AA852047 1378190_at AA945871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945871 /DB_XREF=gi:4132630 /DB_XREF=EST201370 /CLONE=RLUAW30 /FEA=EST /CNT=4 /TID=Rn.30317.1 /TIER=ConsEnd /STK=3 /UG=Rn.30317 /UG_TITLE=ESTs AA945871 1378191_at AI549102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549102 /DB_XREF=gi:4466590 /DB_XREF=UI-R-C3-tq-e-11-0-UI.s1 /CLONE=UI-R-C3-tq-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.35318.1 /TIER=ConsEnd /STK=3 /UG=Rn.35318 /UG_TITLE=ESTs AI549102 nuclear cap binding protein subunit 1, 80kDa Ncbp1 298075 NM_001014785 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // not recorded /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from sequence or structural similarity /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from electronic annotation /// 0000387 // spliceosomal snRNP assembly // not recorded /// 0006370 // mRNA capping // not recorded /// 0006370 // mRNA capping // inferred from sequence or structural similarity /// 0006370 // mRNA capping // inferred from electronic annotation /// 0006379 // mRNA cleavage // not recorded /// 0006379 // mRNA cleavage // inferred from sequence or structural similarity /// 0006379 // mRNA cleavage // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // not recorded /// 0006406 // mRNA export from nucleus // inferred from sequence or structural similarity /// 0006406 // mRNA export from nucleus // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // not recorded /// 0006446 // regulation of translational initiation // inferred from sequence or structural similarity /// 0006446 // regulation of translational initiation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0016070 // RNA metabolic process // inferred from electronic annotation /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0031442 // positive regulation of mRNA 3'-end processing // not recorded /// 0031442 // positive regulation of mRNA 3'-end processing // inferred from sequence or structural similarity /// 0031442 // positive regulation of mRNA 3'-end processing // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005845 // mRNA cap binding complex // not recorded /// 0005845 // mRNA cap binding complex // inferred from sequence or structural similarity /// 0005845 // mRNA cap binding complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378192_at BE100915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100915 /DB_XREF=gi:8492816 /DB_XREF=UI-R-BJ1-aug-a-03-0-UI.s1 /CLONE=UI-R-BJ1-aug-a-03-0-UI /FEA=EST /CNT=4 /TID=Rn.37682.1 /TIER=ConsEnd /STK=3 /UG=Rn.37682 /UG_TITLE=ESTs BE100915 Transmembrane protein 42 Tmem42 363171 NM_001191886 /// XM_001078553 /// XM_002729984 /// XM_343510 0016021 // integral to membrane // inferred from electronic annotation 1378193_at AI408286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408286 /DB_XREF=gi:4251790 /DB_XREF=EST236576 /CLONE=ROVEH57 /FEA=EST /CNT=4 /TID=Rn.44037.1 /TIER=ConsEnd /STK=3 /UG=Rn.44037 /UG_TITLE=ESTs AI408286 membrane-spanning 4-domains, subfamily A, member 7 Ms4a7 293744 NM_001106338 0016021 // integral to membrane // inferred from electronic annotation 1378194_a_at BG671338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671338 /DB_XREF=gi:13893437 /DB_XREF=DRNBPC06 /CLONE=DRNBPC06 /FEA=EST /CNT=4 /TID=Rn.40877.2 /TIER=ConsEnd /STK=3 /UG=Rn.40877 /UG_TITLE=ESTs, Weakly similar to T43467 hypothetical protein DKFZp434A1727.1 (H.sapiens) BG671338 RUN and FYVE domain containing 3 Rufy3 360921 NM_001025127 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0050771 // negative regulation of axonogenesis // inferred from direct assay 0030175 // filopodium // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378195_at AI574951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI574951 /DB_XREF=gi:4544947 /DB_XREF=UI-R-G0-ug-b-11-0-UI.s1 /CLONE=UI-R-G0-ug-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.39196.1 /TIER=ConsEnd /STK=3 /UG=Rn.39196 /UG_TITLE=ESTs AI574951 Desmin Des 64362 NM_022531 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005626 // insoluble fraction // inferred from electronic annotation /// 0005626 // insoluble fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005856 // cytoskeleton // not recorded /// 0005882 // intermediate filament // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0030018 // Z disc // not recorded /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042383 // sarcolemma // not recorded /// 0043292 // contractile fiber // inferred from electronic annotation /// 0043292 // contractile fiber // not recorded /// 0045098 // type III intermediate filament // inferred from mutant phenotype /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378196_at BI290895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290895 /DB_XREF=gi:14949912 /DB_XREF=UI-R-DK0-cgi-g-08-0-UI.s1 /CLONE=UI-R-DK0-cgi-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.35465.1 /TIER=ConsEnd /STK=3 /UG=Rn.35465 /UG_TITLE=ESTs BI290895 solute carrier family 43, member 1 Slc43a1 311168 NM_001107742 0003333 // amino acid transmembrane transport // not recorded /// 0006865 // amino acid transport // not recorded /// 0015804 // neutral amino acid transport // not recorded /// 0015804 // neutral amino acid transport // inferred from electronic annotation /// 0015807 // L-amino acid transport // not recorded /// 0015807 // L-amino acid transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // not recorded 0015171 // amino acid transmembrane transporter activity // not recorded /// 0015175 // neutral amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015175 // neutral amino acid transmembrane transporter activity // not recorded /// 0015179 // L-amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015179 // L-amino acid transmembrane transporter activity // not recorded 1378197_at AW433953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433953 /DB_XREF=gi:6965260 /DB_XREF=UI-R-BJ0p-afn-e-07-0-UI.s1 /CLONE=UI-R-BJ0p-afn-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.16323.1 /TIER=ConsEnd /STK=3 /UG=Rn.16323 /UG_TITLE=ESTs AW433953 kinesin family member C2 KIFC2 300053 NM_198752 0007018 // microtubule-based movement // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1378198_at BG372528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372528 /DB_XREF=gi:13269065 /DB_XREF=UI-R-CV1-brv-c-03-0-UI.s1 /CLONE=UI-R-CV1-brv-c-03-0-UI /FEA=EST /CNT=4 /TID=Rn.51010.1 /TIER=ConsEnd /STK=3 /UG=Rn.51010 /UG_TITLE=ESTs BG372528 oligophrenin 1 Ophn1 312108 NM_001107848 0006897 // endocytosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0046847 // filopodium assembly // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0008093 // cytoskeletal adaptor activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction 1378199_at AI408485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408485 /DB_XREF=gi:4251989 /DB_XREF=EST236775 /CLONE=ROVEO83 /FEA=EST /CNT=4 /TID=Rn.35615.1 /TIER=ConsEnd /STK=3 /UG=Rn.35615 /UG_TITLE=ESTs AI408485 Leucine zipper protein 5 Luzp5 362798 XM_001061369 /// XM_343124 0001833 // inner cell mass cell proliferation // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378200_at AW434934 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434934 /DB_XREF=gi:6966241 /DB_XREF=UI-R-BJ0p-afg-g-01-0-UI.s1 /CLONE=UI-R-BJ0p-afg-g-01-0-UI /FEA=EST /CNT=4 /TID=Rn.54379.1 /TIER=ConsEnd /STK=3 /UG=Rn.54379 /UG_TITLE=ESTs AW434934 1378201_at BF392915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392915 /DB_XREF=gi:11377774 /DB_XREF=UI-R-CA0-bfq-g-01-0-UI.s1 /CLONE=UI-R-CA0-bfq-g-01-0-UI /FEA=EST /CNT=4 /TID=Rn.58361.1 /TIER=ConsEnd /STK=3 /UG=Rn.58361 /UG_TITLE=ESTs BF392915 1378202_at BE106504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106504 /DB_XREF=gi:8498606 /DB_XREF=UI-R-BO1-aso-g-07-0-UI.s1 /CLONE=UI-R-BO1-aso-g-07-0-UI /FEA=EST /CNT=4 /TID=Rn.41909.1 /TIER=ConsEnd /STK=3 /UG=Rn.41909 /UG_TITLE=ESTs BE106504 1378203_at BE102273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102273 /DB_XREF=gi:8494372 /DB_XREF=UI-R-BT1-aqk-e-10-0-UI.s1 /CLONE=UI-R-BT1-aqk-e-10-0-UI /FEA=EST /CNT=4 /TID=Rn.43628.1 /TIER=ConsEnd /STK=3 /UG=Rn.43628 /UG_TITLE=ESTs, Highly similar to BAF57 (M.musculus) BE102273 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 Smarce1 303518 NM_001024993 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0016514 // SWI/SNF complex // not recorded /// 0017053 // transcriptional repressor complex // not recorded /// 0071564 // npBAF complex // not recorded /// 0071565 // nBAF complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008080 // N-acetyltransferase activity // not recorded /// 0047485 // protein N-terminus binding // not recorded 1378204_at AI171512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171512 /DB_XREF=gi:4134629 /DB_XREF=EST217475 /CLONE=RMUBL92 /FEA=EST /CNT=4 /TID=Rn.24305.1 /TIER=ConsEnd /STK=3 /UG=Rn.24305 /UG_TITLE=ESTs AI171512 1378205_at AI228481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228481 /DB_XREF=gi:3812368 /DB_XREF=EST225176 /CLONE=RBRCV44 /FEA=EST /CNT=4 /TID=Rn.24331.1 /TIER=ConsEnd /STK=3 /UG=Rn.24331 /UG_TITLE=ESTs AI228481 1378206_a_at BF565261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565261 /DB_XREF=gi:11674991 /DB_XREF=UI-R-BO1-ajj-f-02-0-UI.r1 /CLONE=UI-R-BO1-ajj-f-02-0-UI /FEA=EST /CNT=1 /TID=Rn.46511.2 /TIER=ConsEnd /STK=0 /UG=Rn.46511 /UG_TITLE=ESTs, Highly similar to MEG1 MOUSE MEIOSIS EXPRESSED PROTEIN 1 (M.musculus) BF565261 meiosis expressed gene 1 Meig1 679834 NM_001134882 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1378207_at BF401555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401555 /DB_XREF=gi:11389530 /DB_XREF=UI-R-CA0-bgm-a-01-0-UI.s1 /CLONE=UI-R-CA0-bgm-a-01-0-UI /FEA=EST /CNT=4 /TID=Rn.56611.1 /TIER=ConsEnd /STK=3 /UG=Rn.56611 /UG_TITLE=ESTs BF401555 1378208_at BE099836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099836 /DB_XREF=gi:8491717 /DB_XREF=UI-R-BJ1-atq-g-07-0-UI.s1 /CLONE=UI-R-BJ1-atq-g-07-0-UI /FEA=EST /CNT=4 /TID=Rn.11672.1 /TIER=ConsEnd /STK=3 /UG=Rn.11672 /UG_TITLE=ESTs BE099836 1378209_a_at AW435118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435118 /DB_XREF=gi:6966425 /DB_XREF=UI-R-BJ0p-afy-g-08-0-UI.s1 /CLONE=UI-R-BJ0p-afy-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.20704.1 /TIER=ConsEnd /STK=3 /UG=Rn.20704 /UG_TITLE=ESTs, Moderately similar to JC5930 serinearginine-rich protein-specific kinase (M.musculus) AW435118 SFRS protein kinase 3 Srpk3 293854 NM_184045 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1378210_at BE114473 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114473 /DB_XREF=gi:8506578 /DB_XREF=UI-R-CA0-axm-f-03-0-UI.s1 /CLONE=UI-R-CA0-axm-f-03-0-UI /FEA=EST /CNT=4 /TID=Rn.46172.1 /TIER=ConsEnd /STK=3 /UG=Rn.46172 /UG_TITLE=ESTs BE114473 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0035097 // histone methyltransferase complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042800 // histone methyltransferase activity (H3-K4 specific) // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378211_s_at BE114473 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114473 /DB_XREF=gi:8506578 /DB_XREF=UI-R-CA0-axm-f-03-0-UI.s1 /CLONE=UI-R-CA0-axm-f-03-0-UI /FEA=EST /CNT=4 /TID=Rn.46172.1 /TIER=ConsEnd /STK=3 /UG=Rn.46172 /UG_TITLE=ESTs BE114473 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0035097 // histone methyltransferase complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042800 // histone methyltransferase activity (H3-K4 specific) // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378212_at BI303251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303251 /DB_XREF=gi:14979531 /DB_XREF=UI-R-DQ0-ciz-f-23-0-UI.s1 /CLONE=UI-R-DQ0-ciz-f-23-0-UI /FEA=EST /CNT=4 /TID=Rn.47833.1 /TIER=ConsEnd /STK=3 /UG=Rn.47833 /UG_TITLE=ESTs BI303251 1378213_at AI177969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177969 /DB_XREF=gi:3728607 /DB_XREF=EST221625 /CLONE=RPLCJ32 /FEA=EST /CNT=4 /TID=Rn.20152.1 /TIER=ConsEnd /STK=3 /UG=Rn.20152 /UG_TITLE=ESTs AI177969 1378214_at AI101388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101388 /DB_XREF=gi:3706296 /DB_XREF=EST210677 /CLONE=RBRBN71 /FEA=EST /CNT=4 /TID=Rn.23884.1 /TIER=ConsEnd /STK=3 /UG=Rn.23884 /UG_TITLE=ESTs AI101388 1378215_at BI291205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291205 /DB_XREF=gi:14950527 /DB_XREF=UI-R-CV2-cgm-b-01-0-UI.s1 /CLONE=UI-R-CV2-cgm-b-01-0-UI /FEA=EST /CNT=4 /TID=Rn.28716.1 /TIER=ConsEnd /STK=3 /UG=Rn.28716 /UG_TITLE=ESTs BI291205 GIY-YIG domain containing 2 Giyd2 293489 NM_001009292 0000724 // double-strand break repair via homologous recombination // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006281 // DNA repair // not recorded /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010792 // DNA double-strand break processing involved in repair via single-strand annealing // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0033557 // Slx1-Slx4 complex // not recorded 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008821 // crossover junction endodeoxyribonuclease activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017108 // 5'-flap endonuclease activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1378216_at BM387900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387900 /DB_XREF=gi:18187953 /DB_XREF=UI-R-CN1-cjk-n-15-0-UI.s1 /CLONE=UI-R-CN1-cjk-n-15-0-UI /FEA=EST /CNT=4 /TID=Rn.21695.1 /TIER=ConsEnd /STK=3 /UG=Rn.21695 /UG_TITLE=ESTs BM387900 1378217_at BI284196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284196 /DB_XREF=gi:14936658 /DB_XREF=UI-R-CX0s-ccn-d-02-0-UI.s1 /CLONE=UI-R-CX0s-ccn-d-02-0-UI /FEA=EST /CNT=4 /TID=Rn.69460.1 /TIER=ConsEnd /STK=3 /UG=Rn.69460 /UG_TITLE=ESTs, Weakly similar to AT motif-binding factor (M.musculus) BI284196 zinc finger homeobox 2 Zfhx2 305888 NM_001098803 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1378218_at AW527419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527419 /DB_XREF=gi:7169833 /DB_XREF=UI-R-BO1-ajt-b-07-0-UI.s1 /CLONE=UI-R-BO1-ajt-b-07-0-UI /FEA=EST /CNT=4 /TID=Rn.46525.1 /TIER=ConsEnd /STK=3 /UG=Rn.46525 /UG_TITLE=ESTs, Moderately similar to transcription factor CP2 (Mus musculus) (M.musculus) AW527419 transcription factor CP2 Tcfcp2 315309 NM_001134714 1378219_at BF420086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420086 /DB_XREF=gi:11408075 /DB_XREF=UI-R-BJ2-bpm-g-06-0-UI.s1 /CLONE=UI-R-BJ2-bpm-g-06-0-UI /FEA=EST /CNT=4 /TID=Rn.63796.1 /TIER=ConsEnd /STK=3 /UG=Rn.63796 /UG_TITLE=ESTs, Weakly similar to SGT RAT SMALL GLUTAMINE-RICH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN (R.norvegicus) BF420086 small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta Sgtb 294708 NM_181629 0006457 // protein folding // traceable author statement 0005488 // binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // traceable author statement /// 0030544 // Hsp70 protein binding // traceable author statement /// 0051087 // chaperone binding // traceable author statement 1378220_at AI111983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111983 /DB_XREF=gi:3511932 /DB_XREF=UI-R-Y0-mo-f-11-0-UI.s1 /CLONE=UI-R-Y0-mo-f-11-0-UI /FEA=EST /CNT=4 /TID=Rn.26687.1 /TIER=ConsEnd /STK=3 /UG=Rn.26687 /UG_TITLE=ESTs, Highly similar to 60S RIBOSOMAL PROTEIN L39 (R.norvegicus) AI111983 similar to RIKEN cDNA 4930517K11 LOC497860 497860 NM_001195471 /// XM_002724479 /// XM_002727699 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1378221_at BE117032 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117032 /DB_XREF=gi:8509137 /DB_XREF=UI-R-BJ1-awt-a-08-0-UI.s1 /CLONE=UI-R-BJ1-awt-a-08-0-UI /FEA=EST /CNT=4 /TID=Rn.45882.1 /TIER=ConsEnd /STK=3 /UG=Rn.45882 /UG_TITLE=ESTs BE117032 Serum response factor binding protein 1 Srfbp1 291469 NM_001005536 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378222_at BF389961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389961 /DB_XREF=gi:11374803 /DB_XREF=UI-R-BS2-bdq-g-01-0-UI.s1 /CLONE=UI-R-BS2-bdq-g-01-0-UI /FEA=EST /CNT=4 /TID=Rn.33191.1 /TIER=ConsEnd /STK=3 /UG=Rn.33191 /UG_TITLE=ESTs BF389961 1378223_at AI717058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717058 /DB_XREF=gi:5034314 /DB_XREF=UI-R-Y0-acu-e-01-0-UI.s1 /CLONE=UI-R-Y0-acu-e-01-0-UI /FEA=EST /CNT=4 /TID=Rn.40668.1 /TIER=ConsEnd /STK=3 /UG=Rn.40668 /UG_TITLE=ESTs AI717058 1378224_at BE105981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105981 /DB_XREF=gi:8498083 /DB_XREF=UI-R-BX0-asc-e-03-0-UI.s1 /CLONE=UI-R-BX0-asc-e-03-0-UI /FEA=EST /CNT=4 /TID=Rn.18755.1 /TIER=ConsEnd /STK=3 /UG=Rn.18755 /UG_TITLE=ESTs BE105981 1378225_at AI176440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176440 /DB_XREF=gi:3727078 /DB_XREF=EST220024 /CLONE=ROVBR75 /FEA=EST /CNT=4 /TID=Rn.54274.1 /TIER=ConsEnd /STK=3 /UG=Rn.54274 /UG_TITLE=ESTs AI176440 Matrix metallopeptidase 14 (membrane-inserted) Mmp14 81707 NM_031056 0001503 // ossification // inferred from expression pattern /// 0001525 // angiogenesis // inferred from expression pattern /// 0001541 // ovarian follicle development // inferred from expression pattern /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001935 // endothelial cell proliferation // inferred from expression pattern /// 0006508 // proteolysis // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0031638 // zymogen activation // inferred from electronic annotation /// 0031638 // zymogen activation // not recorded /// 0043615 // astrocyte cell migration // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // not recorded /// 0048771 // tissue remodeling // inferred from direct assay /// 0051895 // negative regulation of focal adhesion assembly // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from physical interaction /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016504 // peptidase activator activity // inferred from mutant phenotype /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378226_at BF418057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418057 /DB_XREF=gi:11406046 /DB_XREF=UI-R-CA1-blv-h-08-0-UI.s1 /CLONE=UI-R-CA1-blv-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.63348.1 /TIER=ConsEnd /STK=3 /UG=Rn.63348 /UG_TITLE=ESTs BF418057 TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa Taf1d 363017 NM_001014207 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378227_at AI704523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI704523 /DB_XREF=gi:4992423 /DB_XREF=UI-R-AC0-yp-a-11-0-UI.s1 /CLONE=UI-R-AC0-yp-a-11-0-UI /FEA=EST /CNT=4 /TID=Rn.41231.1 /TIER=ConsEnd /STK=3 /UG=Rn.41231 /UG_TITLE=ESTs, Highly similar to JC6127 RNA-binding protein type 1 (H.sapiens) AI704523 RNA binding protein with multiple splicing 2 Rbpms2 503214 NM_001173426 /// XM_001076681 /// XM_578738 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1378228_at BF567990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567990 /DB_XREF=gi:11677720 /DB_XREF=UI-R-BO0-ahx-b-10-0-UI.r1 /CLONE=UI-R-BO0-ahx-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.31314.1 /TIER=ConsEnd /STK=3 /UG=Rn.31314 /UG_TITLE=ESTs, Highly similar to open reading frame 31; G5b protein (Mus musculus) (M.musculus) BF567990 proline-rich transmembrane protein 1 Prrt1 406167 NM_001032285 0009607 // response to biotic stimulus // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1378229_at BE118073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118073 /DB_XREF=gi:8510178 /DB_XREF=UI-R-BS1-azn-d-03-0-UI.s1 /CLONE=UI-R-BS1-azn-d-03-0-UI /FEA=EST /CNT=4 /TID=Rn.41891.1 /TIER=ConsEnd /STK=3 /UG=Rn.41891 /UG_TITLE=ESTs BE118073 1378230_at AI575447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575447 /DB_XREF=gi:4559823 /DB_XREF=UI-R-Y0-vg-e-07-0-UI.s1 /CLONE=UI-R-Y0-vg-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.38452.1 /TIER=ConsEnd /STK=3 /UG=Rn.38452 /UG_TITLE=ESTs AI575447 1378231_at BI300425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300425 /DB_XREF=gi:14976705 /DB_XREF=UI-R-CV2-cie-g-10-0-UI.s1 /CLONE=UI-R-CV2-cie-g-10-0-UI /FEA=EST /CNT=4 /TID=Rn.76515.1 /TIER=ConsEnd /STK=3 /UG=Rn.76515 /UG_TITLE=ESTs BI300425 1378232_at BF417445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417445 /DB_XREF=gi:11405434 /DB_XREF=UI-R-CN0-blg-c-01-0-UI.s1 /CLONE=UI-R-CN0-blg-c-01-0-UI /FEA=EST /CNT=4 /TID=Rn.16039.1 /TIER=ConsEnd /STK=3 /UG=Rn.16039 /UG_TITLE=ESTs BF417445 chloride channel 3 Clcn3 84360 NM_053363 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from direct assay /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from direct assay /// 0006821 // chloride transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005622 // intracellular // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from sequence or structural similarity /// 0005770 // late endosome // not recorded /// 0005770 // late endosome // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from direct assay /// 0012506 // vesicle membrane // not recorded /// 0012506 // vesicle membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030658 // transport vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from direct assay /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from direct assay /// 0005247 // voltage-gated chloride channel activity // inferred from direct assay /// 0005247 // voltage-gated chloride channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation /// 0030165 // PDZ domain binding // not recorded /// 0030165 // PDZ domain binding // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // not recorded 1378233_at BF284235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284235 /DB_XREF=gi:11215305 /DB_XREF=EST448826 /CLONE=RGIEN17 /FEA=EST /CNT=4 /TID=Rn.18339.1 /TIER=ConsEnd /STK=3 /UG=Rn.18339 /UG_TITLE=ESTs BF284235 1378234_at BF524457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF524457 /DB_XREF=gi:11632424 /DB_XREF=UI-R-C3-tm-e-05-0-UI.r1 /CLONE=UI-R-C3-tm-e-05-0-UI /FEA=EST /CNT=4 /TID=Rn.41099.1 /TIER=ConsEnd /STK=3 /UG=Rn.41099 /UG_TITLE=ESTs BF524457 1378235_at AI549590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549590 /DB_XREF=gi:4467078 /DB_XREF=UI-R-C3-tt-g-06-0-UI.s1 /CLONE=UI-R-C3-tt-g-06-0-UI /FEA=EST /CNT=4 /TID=Rn.38937.1 /TIER=ConsEnd /STK=3 /UG=Rn.38937 /UG_TITLE=ESTs AI549590 glycerophosphodiester phosphodiesterase domain containing 1 Gdpd1 303407 NM_001044238 0006071 // glycerol metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0008889 // glycerophosphodiester phosphodiesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378236_at BE100650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100650 /DB_XREF=gi:8492547 /DB_XREF=UI-R-BJ1-auk-g-12-0-UI.s1 /CLONE=UI-R-BJ1-auk-g-12-0-UI /FEA=EST /CNT=4 /TID=Rn.11967.1 /TIER=ConsEnd /STK=3 /UG=Rn.11967 /UG_TITLE=ESTs BE100650 leucine rich repeat containing 16A Lrrc16a 306941 NM_001191692 /// XM_001070748 /// XM_225336 1378237_at BG376172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376172 /DB_XREF=gi:13300644 /DB_XREF=UI-R-CT0-bun-d-01-0-UI.s1 /CLONE=UI-R-CT0-bun-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.20910.1 /TIER=ConsEnd /STK=3 /UG=Rn.20910 /UG_TITLE=ESTs BG376172 1378238_at AI598720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598720 /DB_XREF=gi:4607768 /DB_XREF=EST250423 /CLONE=REMED69 /FEA=EST /CNT=4 /TID=Rn.38702.1 /TIER=ConsEnd /STK=3 /UG=Rn.38702 /UG_TITLE=ESTs AI598720 anaphase promoting complex subunit 1 Anapc1 311412 NM_001107771 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070979 // protein K11-linked ubiquitination // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005680 // anaphase-promoting complex // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded 1378239_at BF404337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404337 /DB_XREF=gi:11392312 /DB_XREF=UI-R-CA1-bjd-o-13-0-UI.s1 /CLONE=UI-R-CA1-bjd-o-13-0-UI /FEA=EST /CNT=4 /TID=Rn.60475.1 /TIER=ConsEnd /STK=3 /UG=Rn.60475 /UG_TITLE=ESTs, Weakly similar to SUIS RAT SUCRASE-ISOMALTASE, INTESTINAL (R.norvegicus) BF404337 glucosidase, alpha, acid Gaa 367562 NM_199118 0001525 // angiogenesis // inferred from electronic annotation /// 0002026 // regulation of the force of heart contraction // not recorded /// 0002086 // diaphragm contraction // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // not recorded /// 0005980 // glycogen catabolic process // inferred from direct assay /// 0005980 // glycogen catabolic process // inferred from mutant phenotype /// 0005980 // glycogen catabolic process // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006436 // tryptophanyl-tRNA aminoacylation // inferred from electronic annotation /// 0006941 // striated muscle contraction // not recorded /// 0007040 // lysosome organization // not recorded /// 0007517 // muscle organ development // not recorded /// 0007626 // locomotory behavior // not recorded /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009888 // tissue development // not recorded /// 0043181 // vacuolar sequestering // not recorded /// 0043587 // tongue morphogenesis // not recorded /// 0046716 // muscle cell homeostasis // not recorded /// 0050884 // neuromuscular process controlling posture // not recorded /// 0050885 // neuromuscular process controlling balance // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0060048 // cardiac muscle contraction // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004558 // alpha-glucosidase activity // inferred from direct assay /// 0004558 // alpha-glucosidase activity // inferred from mutant phenotype /// 0004558 // alpha-glucosidase activity // not recorded /// 0004558 // alpha-glucosidase activity // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004830 // tryptophan-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation 1378240_at AI031007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI031007 /DB_XREF=gi:3248833 /DB_XREF=UI-R-C0-je-f-10-0-UI.s1 /CLONE=UI-R-C0-je-f-10-0-UI /FEA=EST /CNT=4 /TID=Rn.18655.1 /TIER=ConsEnd /STK=3 /UG=Rn.18655 /UG_TITLE=ESTs AI031007 Fanconi anemia, complementation group D2 Fancd2 312641 NM_001001719 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007129 // synapsis // inferred from electronic annotation /// 0007129 // synapsis // not recorded /// 0007276 // gamete generation // inferred from electronic annotation /// 0007276 // gamete generation // not recorded /// 0010332 // response to gamma radiation // inferred from electronic annotation /// 0010332 // response to gamma radiation // not recorded 0000793 // condensed chromosome // inferred from electronic annotation /// 0000793 // condensed chromosome // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378241_at AI555203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555203 /DB_XREF=gi:4487566 /DB_XREF=UI-R-C2p-qu-a-12-0-UI.s1 /CLONE=UI-R-C2p-qu-a-12-0-UI /FEA=EST /CNT=4 /TID=Rn.38810.1 /TIER=ConsEnd /STK=3 /UG=Rn.38810 /UG_TITLE=ESTs AI555203 1378242_at BE106915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106915 /DB_XREF=gi:8499017 /DB_XREF=UI-R-BT1-asu-f-09-0-UI.s1 /CLONE=UI-R-BT1-asu-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.51074.1 /TIER=ConsEnd /STK=3 /UG=Rn.51074 /UG_TITLE=ESTs, Highly similar to RO60_MOUSE 60-KDA SS-ARO RIBONUCLEOPROTEIN (60 KDA RO PROTEIN) (60 KDA RIBONUCLEOPROTEIN RO) (RORNP) (M.musculus) BE106915 1378243_at AA923937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA923937 /DB_XREF=gi:4234029 /DB_XREF=UI-R-E0-cw-f-04-0-UI.s2 /CLONE=UI-R-E0-cw-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.8102.1 /TIER=ConsEnd /STK=3 /UG=Rn.8102 /UG_TITLE=ESTs AA923937 transmembrane protein 17 Tmem17 360985 NM_001010961 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1378244_at AI072663 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072663 /DB_XREF=gi:3398857 /DB_XREF=UI-R-C2-nk-a-12-0-UI.s1 /CLONE=UI-R-C2-nk-a-12-0-UI /FEA=EST /CNT=4 /TID=Rn.20215.1 /TIER=ConsEnd /STK=3 /UG=Rn.20215 /UG_TITLE=ESTs AI072663 1378245_at BF563206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563206 /DB_XREF=gi:11672936 /DB_XREF=UI-R-BO1-ajg-g-02-0-UI.r1 /CLONE=UI-R-BO1-ajg-g-02-0-UI /FEA=EST /CNT=4 /TID=Rn.49100.1 /TIER=ConsEnd /STK=3 /UG=Rn.49100 /UG_TITLE=ESTs BF563206 family with sequence similarity 81, member A Fam81a 315789 NM_001108163 1378246_at AW535196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535196 /DB_XREF=gi:7177655 /DB_XREF=UI-R-C4-alu-h-03-0-UI.s1 /CLONE=UI-R-C4-alu-h-03-0-UI /FEA=EST /CNT=4 /TID=Rn.47875.1 /TIER=ConsEnd /STK=3 /UG=Rn.47875 /UG_TITLE=ESTs AW535196 PTC7 protein phosphatase homolog (S. cerevisiae) Pptc7 304488 NM_001107141 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation 1378247_at BI285131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285131 /DB_XREF=gi:14938463 /DB_XREF=UI-R-DB0-byw-e-07-0-UI.s1 /CLONE=UI-R-DB0-byw-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.20681.1 /TIER=ConsEnd /STK=3 /UG=Rn.20681 /UG_TITLE=ESTs BI285131 ELL associated factor 2 Eaf2 266787 NM_172047 0006350 // transcription // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from direct assay /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0060770 // negative regulation of epithelial cell proliferation involved in prostate gland development // inferred from electronic annotation /// 0060770 // negative regulation of epithelial cell proliferation involved in prostate gland development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005654 // nucleoplasm // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from electronic annotation 1378248_at BE110453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110453 /DB_XREF=gi:8502558 /DB_XREF=UI-R-BJ1-auo-b-11-0-UI.s1 /CLONE=UI-R-BJ1-auo-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.49513.1 /TIER=ConsEnd /STK=3 /UG=Rn.49513 /UG_TITLE=ESTs BE110453 amyloid beta (A4) precursor protein-binding, family B, member 2 Apbb2 305338 XM_001077874 /// XM_223399 0001764 // neuron migration // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0007411 // axon guidance // not recorded /// 0030198 // extracellular matrix organization // not recorded /// 0030308 // negative regulation of cell growth // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045749 // negative regulation of S phase of mitotic cell cycle // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded 1378249_x_at BE110241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110241 /DB_XREF=gi:8502346 /DB_XREF=UI-R-CA0-axk-g-01-0-UI.s1 /CLONE=UI-R-CA0-axk-g-01-0-UI /FEA=EST /CNT=4 /TID=Rn.63544.1 /TIER=ConsEnd /STK=3 /UG=Rn.63544 /UG_TITLE=ESTs BE110241 1378250_at BE104756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104756 /DB_XREF=gi:8496856 /DB_XREF=UI-R-BX0-art-b-10-0-UI.s1 /CLONE=UI-R-BX0-art-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.27374.1 /TIER=ConsEnd /STK=3 /UG=Rn.27374 /UG_TITLE=ESTs BE104756 Histocompatibility 13 H13 311545 NM_001107789 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378251_at BF415104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415104 /DB_XREF=gi:11403093 /DB_XREF=UI-R-BJ2-bou-g-05-0-UI.s1 /CLONE=UI-R-BJ2-bou-g-05-0-UI /FEA=EST /CNT=4 /TID=Rn.43866.1 /TIER=ConsEnd /STK=3 /UG=Rn.43866 /UG_TITLE=ESTs BF415104 triggering receptor expressed on myeloid cells-like 1 Treml1 501096 NM_001192001 /// XM_001063534 /// XM_576511 0019722 // calcium-mediated signaling // not recorded /// 0030168 // platelet activation // not recorded 0009986 // cell surface // not recorded /// 0031091 // platelet alpha granule // not recorded 0005515 // protein binding // not recorded 1378252_at AI029745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029745 /DB_XREF=gi:4300679 /DB_XREF=UI-R-C0-jg-e-06-0-UI.s1 /CLONE=UI-R-C0-jg-e-06-0-UI /FEA=EST /CNT=4 /TID=Rn.18313.1 /TIER=ConsEnd /STK=3 /UG=Rn.18313 /UG_TITLE=ESTs AI029745 chondrolectin Chodl 288289 NM_001105894 0048471 // perinuclear region of cytoplasm // not recorded 0005488 // binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // not recorded 1378253_at AI555294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555294 /DB_XREF=gi:4487657 /DB_XREF=UI-R-C2p-qq-d-03-0-UI.s1 /CLONE=UI-R-C2p-qq-d-03-0-UI /FEA=EST /CNT=4 /TID=Rn.39271.1 /TIER=ConsEnd /STK=3 /UG=Rn.39271 /UG_TITLE=ESTs AI555294 1378254_at BM389480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389480 /DB_XREF=gi:18189533 /DB_XREF=UI-R-CN1-cjn-j-15-0-UI.s1 /CLONE=UI-R-CN1-cjn-j-15-0-UI /FEA=EST /CNT=4 /TID=Rn.49210.1 /TIER=ConsEnd /STK=3 /UG=Rn.49210 /UG_TITLE=ESTs, Moderately similar to T00261 hypothetical protein KIAA0603 (H.sapiens) BM389480 similar to TBC1 domain family member 4 (Akt substrate of 160 kDa) (AS160) LOC686547 686547 XM_001074155 /// XM_001074183 /// XM_001074206 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// 0032880 // regulation of protein localization // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1378255_at BE111416 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111416 /DB_XREF=gi:8503521 /DB_XREF=UI-R-BJ1-auy-e-12-0-UI.s1 /CLONE=UI-R-BJ1-auy-e-12-0-UI /FEA=EST /CNT=4 /TID=Rn.51992.1 /TIER=ConsEnd /STK=3 /UG=Rn.51992 /UG_TITLE=ESTs BE111416 1378256_at BG374570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374570 /DB_XREF=gi:13299082 /DB_XREF=UI-R-CV1-bta-d-04-0-UI.s1 /CLONE=UI-R-CV1-bta-d-04-0-UI /FEA=EST /CNT=4 /TID=Rn.12520.1 /TIER=ConsEnd /STK=3 /UG=Rn.12520 /UG_TITLE=ESTs BG374570 RNA polymerase II associated protein 1 Rpap1 311338 NM_001033999 0006350 // transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1378257_at BG377140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377140 /DB_XREF=gi:13301577 /DB_XREF=UI-R-CU0-buw-e-07-0-UI.s1 /CLONE=UI-R-CU0-buw-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.12603.1 /TIER=ConsEnd /STK=3 /UG=Rn.12603 /UG_TITLE=ESTs, Weakly similar to T46299 hypothetical protein DKFZp434J0310.1 (H.sapiens) BG377140 three prime repair exonuclease 1 Trex1 100049583 NM_001024989 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0032405 // MutLalpha complex binding // inferred from electronic annotation /// 0032407 // MutSalpha complex binding // inferred from electronic annotation /// 0032558 // adenyl deoxyribonucleotide binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation 1378258_at AI716449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716449 /DB_XREF=gi:5033702 /DB_XREF=UI-R-Y0-ach-b-11-0-UI.s1 /CLONE=UI-R-Y0-ach-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.27106.1 /TIER=ConsEnd /STK=3 /UG=Rn.27106 /UG_TITLE=ESTs AI716449 1378259_at BF396301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396301 /DB_XREF=gi:11381273 /DB_XREF=UI-R-BS2-bdw-f-01-0-UI.s1 /CLONE=UI-R-BS2-bdw-f-01-0-UI /FEA=EST /CNT=4 /TID=Rn.58578.1 /TIER=ConsEnd /STK=3 /UG=Rn.58578 /UG_TITLE=ESTs, Highly similar to TAR DNA binding protein; TAR DNA-binding protein-43 (Homo sapiens) (H.sapiens) BF396301 TAR DNA binding protein Tardbp 298648 NM_001011979 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1378260_at AA817761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817761 /DB_XREF=gi:4198290 /DB_XREF=UI-R-A0-ad-b-06-0-UI.s1 /CLONE=UI-R-A0-ad-b-06-0-UI /FEA=EST /CNT=4 /TID=Rn.40222.1 /TIER=ConsEnd /STK=3 /UG=Rn.40222 /UG_TITLE=ESTs AA817761 alcohol dehydrogenase 1 (class I) Adh1 24172 NM_019286 0001523 // retinoid metabolic process // not recorded /// 0001523 // retinoid metabolic process // inferred from electronic annotation /// 0006068 // ethanol catabolic process // inferred from electronic annotation /// 0006068 // ethanol catabolic process // not recorded /// 0006069 // ethanol oxidation // inferred from direct assay /// 0006069 // ethanol oxidation // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009790 // embryo development // inferred from expression pattern /// 0031100 // organ regeneration // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032526 // response to retinoic acid // not recorded /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0033574 // response to testosterone stimulus // inferred from electronic annotation /// 0033574 // response to testosterone stimulus // not recorded /// 0042572 // retinol metabolic process // inferred from electronic annotation /// 0042572 // retinol metabolic process // not recorded /// 0042573 // retinoic acid metabolic process // inferred from electronic annotation /// 0042573 // retinoic acid metabolic process // not recorded /// 0046186 // acetaldehyde biosynthetic process // inferred from direct assay /// 0048149 // behavioral response to ethanol // inferred from electronic annotation /// 0048149 // behavioral response to ethanol // not recorded /// 0048545 // response to steroid hormone stimulus // not recorded /// 0048545 // response to steroid hormone stimulus // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004022 // alcohol dehydrogenase (NAD) activity // inferred from direct assay /// 0004022 // alcohol dehydrogenase (NAD) activity // not recorded /// 0004022 // alcohol dehydrogenase (NAD) activity // traceable author statement /// 0004022 // alcohol dehydrogenase (NAD) activity // inferred from electronic annotation /// 0004745 // retinol dehydrogenase activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0035276 // ethanol binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from direct assay 1378261_at BE102806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102806 /DB_XREF=gi:8494905 /DB_XREF=UI-R-BT1-aqt-e-03-0-UI.s1 /CLONE=UI-R-BT1-aqt-e-03-0-UI /FEA=EST /CNT=4 /TID=Rn.41438.1 /TIER=ConsEnd /STK=3 /UG=Rn.41438 /UG_TITLE=ESTs BE102806 1378262_at BG377362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377362 /DB_XREF=gi:13301834 /DB_XREF=UI-R-CU0-bvc-e-12-0-UI.s1 /CLONE=UI-R-CU0-bvc-e-12-0-UI /FEA=EST /CNT=4 /TID=Rn.46476.1 /TIER=ConsEnd /STK=3 /UG=Rn.46476 /UG_TITLE=ESTs BG377362 1378263_at BF403483 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403483 /DB_XREF=gi:11391458 /DB_XREF=UI-R-CA1-biz-d-10-0-UI.s1 /CLONE=UI-R-CA1-biz-d-10-0-UI /FEA=EST /CNT=4 /TID=Rn.24693.1 /TIER=ConsEnd /STK=3 /UG=Rn.24693 /UG_TITLE=ESTs BF403483 1378264_at BG375928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375928 /DB_XREF=gi:13300400 /DB_XREF=UI-R-CU0-bur-c-10-0-UI.s1 /CLONE=UI-R-CU0-bur-c-10-0-UI /FEA=EST /CNT=4 /TID=Rn.47834.1 /TIER=ConsEnd /STK=3 /UG=Rn.47834 /UG_TITLE=ESTs, Highly similar to ORNITHINE AMINOTRANSFERASE PRECURSOR (R.norvegicus) BG375928 1378265_at BE103245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103245 /DB_XREF=gi:8495344 /DB_XREF=UI-R-BX0-aqy-d-01-0-UI.s1 /CLONE=UI-R-BX0-aqy-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.50497.1 /TIER=ConsEnd /STK=3 /UG=Rn.50497 /UG_TITLE=ESTs BE103245 1378266_at BF564168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564168 /DB_XREF=gi:11673898 /DB_XREF=UI-R-C4-ali-e-12-0-UI.r1 /CLONE=UI-R-C4-ali-e-12-0-UI /FEA=EST /CNT=4 /TID=Rn.64160.1 /TIER=ConsEnd /STK=3 /UG=Rn.64160 /UG_TITLE=ESTs BF564168 F-box protein 46 Fbxo46 292686 NM_001025642 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378267_at AI058581 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058581 /DB_XREF=gi:3332358 /DB_XREF=UI-R-C1-kv-d-12-0-UI.s1 /CLONE=UI-R-C1-kv-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.18915.1 /TIER=ConsEnd /STK=3 /UG=Rn.18915 /UG_TITLE=ESTs AI058581 1378268_at AI554986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI554986 /DB_XREF=gi:4487349 /DB_XREF=UI-R-C2p-qu-c-06-0-UI.s1 /CLONE=UI-R-C2p-qu-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.21384.1 /TIER=ConsEnd /STK=3 /UG=Rn.21384 /UG_TITLE=ESTs AI554986 1378269_at AI112113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112113 /DB_XREF=gi:3512062 /DB_XREF=UI-R-Y0-mo-g-04-0-UI.s1 /CLONE=UI-R-Y0-mo-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.26720.1 /TIER=ConsEnd /STK=3 /UG=Rn.26720 /UG_TITLE=ESTs AI112113 dynein, axonemal, light chain 1 Dnal1 685664 NM_001109477 0005515 // protein binding // inferred from electronic annotation 1378270_at BF418935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418935 /DB_XREF=gi:11406924 /DB_XREF=UI-R-BJ2-bqk-f-04-0-UI.s1 /CLONE=UI-R-BJ2-bqk-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.9612.1 /TIER=ConsEnd /STK=3 /UG=Rn.9612 /UG_TITLE=ESTs BF418935 Protein phosphatase 1, regulatory subunit 3D Ppp1r3d 689995 NM_001109564 0005979 // regulation of glycogen biosynthetic process // inferred from direct assay /// 0005981 // regulation of glycogen catabolic process // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0042587 // glycogen granule // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0019899 // enzyme binding // inferred from mutant phenotype 1378271_at AW434631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434631 /DB_XREF=gi:6965938 /DB_XREF=UI-R-BJ0p-afi-d-05-0-UI.s1 /CLONE=UI-R-BJ0p-afi-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.23200.1 /TIER=ConsEnd /STK=3 /UG=Rn.23200 /UG_TITLE=ESTs AW434631 hypothetical protein LOC100359521 LOC100359521 100359521 XM_002728527 1378272_at BF411569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411569 /DB_XREF=gi:11399558 /DB_XREF=UI-R-BT1-bmt-g-01-0-UI.s1 /CLONE=UI-R-BT1-bmt-g-01-0-UI /FEA=EST /CNT=4 /TID=Rn.27357.1 /TIER=ConsEnd /STK=3 /UG=Rn.27357 /UG_TITLE=ESTs BF411569 1378273_at BF402395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402395 /DB_XREF=gi:11390370 /DB_XREF=UI-R-CA0-bhn-g-03-0-UI.s1 /CLONE=UI-R-CA0-bhn-g-03-0-UI /FEA=EST /CNT=4 /TID=Rn.28544.1 /TIER=ConsEnd /STK=3 /UG=Rn.28544 /UG_TITLE=ESTs BF402395 1378274_at BF389658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389658 /DB_XREF=gi:11374493 /DB_XREF=UI-R-BS2-bdn-c-03-0-UI.s1 /CLONE=UI-R-BS2-bdn-c-03-0-UI /FEA=EST /CNT=4 /TID=Rn.38618.1 /TIER=ConsEnd /STK=3 /UG=Rn.38618 /UG_TITLE=ESTs BF389658 1378275_at BG377170 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377170 /DB_XREF=gi:13301607 /DB_XREF=UI-R-CU0-buw-h-04-0-UI.s1 /CLONE=UI-R-CU0-buw-h-04-0-UI /FEA=EST /CNT=4 /TID=Rn.38658.1 /TIER=ConsEnd /STK=3 /UG=Rn.38658 /UG_TITLE=ESTs BG377170 UPF3 regulator of nonsense transcripts homolog A (yeast) Upf3a 361176 NM_001012159 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378276_at AI058679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058679 /DB_XREF=gi:3332456 /DB_XREF=UI-R-C1-kp-h-12-0-UI.s1 /CLONE=UI-R-C1-kp-h-12-0-UI /FEA=EST /CNT=4 /TID=Rn.18951.1 /TIER=ConsEnd /STK=3 /UG=Rn.18951 /UG_TITLE=ESTs AI058679 1378277_at BF412939 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412939 /DB_XREF=gi:11400928 /DB_XREF=UI-R-CA0-boc-e-10-0-UI.s1 /CLONE=UI-R-CA0-boc-e-10-0-UI /FEA=EST /CNT=4 /TID=Rn.55354.1 /TIER=ConsEnd /STK=3 /UG=Rn.55354 /UG_TITLE=ESTs BF412939 1378278_at BF388807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388807 /DB_XREF=gi:11373631 /DB_XREF=UI-R-BS2-bde-g-06-0-UI.s1 /CLONE=UI-R-BS2-bde-g-06-0-UI /FEA=EST /CNT=4 /TID=Rn.46514.1 /TIER=ConsEnd /STK=3 /UG=Rn.46514 /UG_TITLE=ESTs, Highly similar to S22544 transcription factor Oct-2, splice form Oct-2.5 - mouse (M.musculus) BF388807 POU class 2 homeobox 2 Pou2f2 117058 XM_001077129 /// XM_341802 0002335 // mature B cell differentiation // inferred from electronic annotation /// 0002335 // mature B cell differentiation // not recorded /// 0002380 // immunoglobulin secretion involved in immune response // inferred from electronic annotation /// 0002380 // immunoglobulin secretion involved in immune response // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0048305 // immunoglobulin secretion // not recorded /// 0048305 // immunoglobulin secretion // inferred from electronic annotation /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1378279_at BE118458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118458 /DB_XREF=gi:8510563 /DB_XREF=UI-R-BJ1-azp-h-01-0-UI.s1 /CLONE=UI-R-BJ1-azp-h-01-0-UI /FEA=EST /CNT=4 /TID=Rn.21664.1 /TIER=ConsEnd /STK=3 /UG=Rn.21664 /UG_TITLE=ESTs BE118458 GABA(A) receptor-associated protein Gabarap 58974 NM_172036 0000226 // microtubule cytoskeleton organization // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0000421 // autophagic vacuole membrane // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005790 // smooth endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // not recorded /// 0005886 // plasma membrane // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // not recorded /// 0048487 // beta-tubulin binding // not recorded /// 0050811 // GABA receptor binding // not recorded 1378280_at AI712832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712832 /DB_XREF=gi:5016632 /DB_XREF=UI-R-AG1-aaf-a-04-0-UI.s2 /CLONE=UI-R-AG1-aaf-a-04-0-UI /FEA=EST /CNT=4 /TID=Rn.40970.1 /TIER=ConsEnd /STK=3 /UG=Rn.40970 /UG_TITLE=ESTs AI712832 similar to KIAA0368 RGD1306148 313196 XR_085838 /// XR_086255 0030433 // ER-associated protein catabolic process // not recorded 0000502 // proteasome complex // not recorded /// 0005634 // nucleus // not recorded /// 0005769 // early endosome // not recorded /// 0005770 // late endosome // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005802 // trans-Golgi network // not recorded /// 0005813 // centrosome // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0030134 // ER to Golgi transport vesicle // not recorded 1378281_at AI709975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709975 /DB_XREF=gi:4999751 /DB_XREF=UI-R-C3-tm-a-11-0-UI.s1 /CLONE=UI-R-C3-tm-a-11-0-UI /FEA=EST /CNT=4 /TID=Rn.41440.1 /TIER=ConsEnd /STK=3 /UG=Rn.41440 /UG_TITLE=ESTs AI709975 1378282_at BI290750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290750 /DB_XREF=gi:14949606 /DB_XREF=UI-R-DK0-cfy-h-06-0-UI.s1 /CLONE=UI-R-DK0-cfy-h-06-0-UI /FEA=EST /CNT=4 /TID=Rn.24052.1 /TIER=ConsEnd /STK=3 /UG=Rn.24052 /UG_TITLE=ESTs BI290750 casein kinase 2, alpha prime polypeptide Csnk2a2 307641 NM_001107409 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0051726 // regulation of cell cycle // not recorded /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation 1378283_at AI411185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411185 /DB_XREF=gi:4254689 /DB_XREF=EST239479 /CLONE=RKIEP90 /FEA=EST /CNT=4 /TID=Rn.37671.1 /TIER=ConsEnd /STK=3 /UG=Rn.37671 /UG_TITLE=ESTs AI411185 1378284_at BI292067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292067 /DB_XREF=gi:14952206 /DB_XREF=UI-R-DN0-ciu-m-10-0-UI.s1 /CLONE=UI-R-DN0-ciu-m-10-0-UI /FEA=EST /CNT=4 /TID=Rn.42282.1 /TIER=ConsEnd /STK=3 /UG=Rn.42282 /UG_TITLE=ESTs BI292067 1378285_at AA894045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894045 /DB_XREF=gi:3020924 /DB_XREF=EST197848 /CLONE=RPLAO92 /FEA=EST /CNT=4 /TID=Rn.14846.1 /TIER=ConsEnd /STK=3 /UG=Rn.14846 /UG_TITLE=ESTs AA894045 natural cytotoxicity triggering receptor 3 Ncr3 294251 NM_181822 0045954 // positive regulation of natural killer cell mediated cytotoxicity // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1378286_at BI294238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294238 /DB_XREF=gi:14956507 /DB_XREF=UI-R-DK0-cea-c-10-0-UI.s1 /CLONE=UI-R-DK0-cea-c-10-0-UI /FEA=EST /CNT=4 /TID=Rn.44790.1 /TIER=ConsEnd /STK=3 /UG=Rn.44790 /UG_TITLE=ESTs, Weakly similar to T13960 beige protein homolog - rat (R.norvegicus) BI294238 neurobeachin-like 2 Nbeal2 316014 XR_085901 /// XR_086328 0005488 // binding // inferred from electronic annotation 1378287_at BI297296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297296 /DB_XREF=gi:14962536 /DB_XREF=UI-R-CV2-cgw-g-04-0-UI.s1 /CLONE=UI-R-CV2-cgw-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.79892.1 /TIER=ConsEnd /STK=3 /UG=Rn.79892 /UG_TITLE=ESTs BI297296 radixin Rdx 315655 NM_001005889 0030033 // microvillus assembly // not recorded /// 0045176 // apical protein localization // inferred from mutant phenotype /// 0045176 // apical protein localization // not recorded /// 0051016 // barbed-end actin filament capping // inferred from direct assay /// 0070848 // response to growth factor stimulus // inferred from expression pattern 0001726 // ruffle // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005902 // microvillus // inferred from direct assay /// 0005902 // microvillus // not recorded /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0019898 // extrinsic to membrane // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030175 // filopodium // not recorded /// 0030496 // midbody // inferred from direct assay /// 0032154 // cleavage furrow // inferred from direct assay /// 0032420 // stereocilium // not recorded /// 0045177 // apical part of cell // not recorded 0003779 // actin binding // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 1378288_at BI292167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292167 /DB_XREF=gi:14952408 /DB_XREF=UI-R-DN0-civ-c-07-0-UI.s1 /CLONE=UI-R-DN0-civ-c-07-0-UI /FEA=EST /CNT=4 /TID=Rn.19056.1 /TIER=ConsEnd /STK=3 /UG=Rn.19056 /UG_TITLE=ESTs BI292167 organic solute transporter alpha Ostalpha 303879 NM_001107087 0006810 // transport // not recorded 0005886 // plasma membrane // not recorded /// 0016021 // integral to membrane // not recorded 0005215 // transporter activity // not recorded 1378289_at BE120159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120159 /DB_XREF=gi:8512264 /DB_XREF=UI-R-CA0-bap-c-06-0-UI.s1 /CLONE=UI-R-CA0-bap-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.53468.1 /TIER=ConsEnd /STK=3 /UG=Rn.53468 /UG_TITLE=ESTs BE120159 DDB1 and CUL4 associated factor 6 Dcaf6 289181 XM_001071288 /// XM_002724885 /// XM_002728021 /// XM_213926 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0080008 // CUL4 RING ubiquitin ligase complex // not recorded 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded 1378290_at BF551788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551788 /DB_XREF=gi:11661476 /DB_XREF=UI-R-C1-kn-g-03-0-UI.r1 /CLONE=UI-R-C1-kn-g-03-0-UI /FEA=EST /CNT=4 /TID=Rn.18851.1 /TIER=ConsEnd /STK=3 /UG=Rn.18851 /UG_TITLE=ESTs, Weakly similar to T08792 hypothetical protein DKFZp586E1422.1 (H.sapiens) BF551788 solute carrier family 26, member 6 Slc26a6 301010 NM_001143817 0006810 // transport // inferred from electronic annotation /// 0008272 // sulfate transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0008271 // secondary active sulfate transmembrane transporter activity // inferred from electronic annotation 1378291_at BF549558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549558 /DB_XREF=gi:11659288 /DB_XREF=UI-R-C1-lh-h-05-0-UI.r1 /CLONE=UI-R-C1-lh-h-05-0-UI /FEA=EST /CNT=4 /TID=Rn.19518.1 /TIER=ConsEnd /STK=3 /UG=Rn.19518 /UG_TITLE=ESTs BF549558 0006396 // RNA processing // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1378292_at BE096367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096367 /DB_XREF=gi:8487298 /DB_XREF=UI-R-BU0-apf-c-05-0-UI.s1 /CLONE=UI-R-BU0-apf-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.24358.1 /TIER=ConsEnd /STK=3 /UG=Rn.24358 /UG_TITLE=ESTs BE096367 1378293_at AI556246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556246 /DB_XREF=gi:4488609 /DB_XREF=UI-R-C2p-rf-b-07-0-UI.s1 /CLONE=UI-R-C2p-rf-b-07-0-UI /FEA=EST /CNT=4 /TID=Rn.35237.1 /TIER=ConsEnd /STK=3 /UG=Rn.35237 /UG_TITLE=ESTs AI556246 tripartite motif-containing 26 Trim26 309586 NM_001011665 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378294_at BF282402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282402 /DB_XREF=gi:11213384 /DB_XREF=EST446905 /CLONE=RGIDM19 /FEA=EST /CNT=4 /TID=Rn.8828.1 /TIER=ConsEnd /STK=3 /UG=Rn.8828 /UG_TITLE=ESTs BF282402 F-box and leucine-rich repeat protein 12 Fbxl12 313782 NM_001025700 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0000151 // ubiquitin ligase complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1378295_at AA957889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957889 /DB_XREF=gi:4277779 /DB_XREF=UI-R-E1-fv-a-01-0-UI.s1 /CLONE=UI-R-E1-fv-a-01-0-UI /FEA=EST /CNT=4 /TID=Rn.9429.1 /TIER=ConsEnd /STK=3 /UG=Rn.9429 /UG_TITLE=ESTs AA957889 six transmembrane epithelial antigen of the prostate 2 Steap2 312052 NM_001107846 0006893 // Golgi to plasma membrane transport // not recorded /// 0006897 // endocytosis // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009725 // response to hormone stimulus // not recorded /// 0045055 // regulated secretory pathway // not recorded 0005769 // early endosome // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030140 // trans-Golgi network transport vesicle // not recorded /// 0030173 // integral to Golgi membrane // not recorded /// 0042598 // vesicular fraction // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005215 // transporter activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1378296_at AI012651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012651 /DB_XREF=gi:3226483 /DB_XREF=EST207102 /CLONE=RPLBA06 /FEA=EST /CNT=4 /TID=Rn.17875.1 /TIER=ConsEnd /STK=3 /UG=Rn.17875 /UG_TITLE=ESTs AI012651 non-SMC condensin I complex, subunit H Ncaph 680089 XR_085785 /// XR_086214 0000278 // mitotic cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007076 // mitotic chromosome condensation // not recorded /// 0030261 // chromosome condensation // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000796 // condensin complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation 1378297_at AI144652 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144652 /DB_XREF=gi:3666451 /DB_XREF=UI-R-BT0-pl-e-08-0-UI.s1 /CLONE=UI-R-BT0-pl-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.32947.1 /TIER=ConsEnd /STK=3 /UG=Rn.32947 /UG_TITLE=ESTs AI144652 similar to chromosome 20 open reading frame 144 RGD1561517 499927 NM_001135901 1378298_at BG381331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381331 /DB_XREF=gi:13305803 /DB_XREF=UI-R-CT0-bui-h-09-0-UI.s1 /CLONE=UI-R-CT0-bui-h-09-0-UI /FEA=EST /CNT=4 /TID=Rn.38448.1 /TIER=ConsEnd /STK=3 /UG=Rn.38448 /UG_TITLE=ESTs BG381331 immunoglobin superfamily, member 21 /// similar to immunoglobin superfamily, member 21 Igsf21 /// LOC684776 298591 /// 684776 XM_001071901 /// XM_216568 1378299_at BF397445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397445 /DB_XREF=gi:11382468 /DB_XREF=UI-R-BS2-bez-a-03-0-UI.s1 /CLONE=UI-R-BS2-bez-a-03-0-UI /FEA=EST /CNT=4 /TID=Rn.54309.1 /TIER=ConsEnd /STK=3 /UG=Rn.54309 /UG_TITLE=ESTs BF397445 1378300_at AI711102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711102 /DB_XREF=gi:5000878 /DB_XREF=UI-R-AD1-zo-b-09-0-UI.s1 /CLONE=UI-R-AD1-zo-b-09-0-UI /FEA=EST /CNT=4 /TID=Rn.38975.1 /TIER=ConsEnd /STK=3 /UG=Rn.38975 /UG_TITLE=ESTs, Weakly similar to REQN RAT ZINC-FINGER PROTEIN NEURO-D4 (R.norvegicus) AI711102 D4, zinc and double PHD fingers, family 3 Dpf3 299186 NM_001191818 /// XM_001055009 /// XM_238462 0007399 // nervous system development // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0071565 // nBAF complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378301_at BG372184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372184 /DB_XREF=gi:13268686 /DB_XREF=UI-R-CV0-brn-a-05-0-UI.s1 /CLONE=UI-R-CV0-brn-a-05-0-UI /FEA=EST /CNT=4 /TID=Rn.27414.1 /TIER=ConsEnd /STK=3 /UG=Rn.27414 /UG_TITLE=ESTs BG372184 1378302_at BF403965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403965 /DB_XREF=gi:11391940 /DB_XREF=UI-R-CA1-bjd-p-09-0-UI.s1 /CLONE=UI-R-CA1-bjd-p-09-0-UI /FEA=EST /CNT=4 /TID=Rn.31721.1 /TIER=ConsEnd /STK=3 /UG=Rn.31721 /UG_TITLE=ESTs, Moderately similar to phospholipid scramblase 1 (Homo sapiens) (H.sapiens) BF403965 hypothetical protein LOC100362691 LOC100362691 100362691 XM_002727091 /// XM_002729940 1378303_at BE109416 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109416 /DB_XREF=gi:8501521 /DB_XREF=UI-R-BJ1-aur-g-10-0-UI.s1 /CLONE=UI-R-BJ1-aur-g-10-0-UI /FEA=EST /CNT=4 /TID=Rn.51713.1 /TIER=ConsEnd /STK=3 /UG=Rn.51713 /UG_TITLE=ESTs BE109416 trinucleotide repeat containing 6B Tnrc6b 192178 NM_138845 0000166 // nucleotide binding // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation 1378304_at BI276118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276118 /DB_XREF=gi:14920722 /DB_XREF=UI-R-CX0-bwz-c-09-0-UI.s1 /CLONE=UI-R-CX0-bwz-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.15598.1 /TIER=ConsEnd /STK=3 /UG=Rn.15598 /UG_TITLE=ESTs BI276118 1378305_at AI578087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578087 /DB_XREF=gi:4562463 /DB_XREF=UI-R-C3-tk-d-09-0-UI.s2 /CLONE=UI-R-C3-tk-d-09-0-UI /FEA=EST /CNT=4 /TID=Rn.24712.1 /TIER=ConsEnd /STK=3 /UG=Rn.24712 /UG_TITLE=ESTs AI578087 transmembrane 4 L six family member 1 Tm4sf1 295061 NM_001106434 0005887 // integral to plasma membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 1378306_at AW529689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529689 /DB_XREF=gi:7172103 /DB_XREF=UI-R-BU0-amr-b-11-0-UI.s1 /CLONE=UI-R-BU0-amr-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.26805.1 /TIER=ConsEnd /STK=3 /UG=Rn.26805 /UG_TITLE=ESTs AW529689 1378307_at AI412126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412126 /DB_XREF=gi:4255630 /DB_XREF=EST240420 /CLONE=RKIEG43 /FEA=EST /CNT=4 /TID=Rn.35024.1 /TIER=ConsEnd /STK=3 /UG=Rn.35024 /UG_TITLE=ESTs, Moderately similar to T12455 hypothetical protein DKFZp564H2023.1 (H.sapiens) AI412126 1378308_at AI231054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231054 /DB_XREF=gi:3814934 /DB_XREF=EST227742 /CLONE=REMDE69 /FEA=EST /CNT=4 /TID=Rn.23210.1 /TIER=ConsEnd /STK=3 /UG=Rn.23210 /UG_TITLE=ESTs AI231054 1378309_at AW434880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434880 /DB_XREF=gi:6966187 /DB_XREF=UI-R-BJ0p-afg-b-07-0-UI.s1 /CLONE=UI-R-BJ0p-afg-b-07-0-UI /FEA=EST /CNT=4 /TID=Rn.27074.1 /TIER=ConsEnd /STK=3 /UG=Rn.27074 /UG_TITLE=ESTs, Moderately similar to UBPK_HUMAN UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 (UBIQUITIN THIOLESTERASE 20) (UBIQUITIN-SPECIFIC PROCESSING PROTEASE 20) (DEUBIQUITINATING ENZYME 20) (H.sapiens) AW434880 ubiquitin specific peptidase 20 Usp20 311856 NM_001107827 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // not recorded /// 0016579 // protein deubiquitination // not recorded /// 0070536 // protein K63-linked deubiquitination // not recorded /// 0071108 // protein K48-linked deubiquitination // not recorded 0001664 // G-protein-coupled receptor binding // not recorded /// 0004197 // cysteine-type endopeptidase activity // not recorded /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378310_at BG669018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669018 /DB_XREF=gi:13890940 /DB_XREF=DRN04E01 /CLONE=DRN04E01 /FEA=EST /CNT=4 /TID=Rn.18763.1 /TIER=ConsEnd /STK=3 /UG=Rn.18763 /UG_TITLE=ESTs, Highly similar to A37178 neuromedin B precursor - rat (R.norvegicus) BG669018 neuromedin B Nmb 499194 NM_001109149 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008343 // adult feeding behavior // inferred from direct assay /// 0046887 // positive regulation of hormone secretion // inferred from direct assay /// 0046888 // negative regulation of hormone secretion // inferred from mutant phenotype /// 0050482 // arachidonic acid secretion // inferred from direct assay 0019717 // synaptosome // inferred from direct assay 0031710 // neuromedin B receptor binding // inferred from physical interaction 1378311_at BE115189 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115189 /DB_XREF=gi:8507294 /DB_XREF=UI-R-BJ1-avs-c-05-0-UI.s1 /CLONE=UI-R-BJ1-avs-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.12733.1 /TIER=ConsEnd /STK=3 /UG=Rn.12733 /UG_TITLE=ESTs BE115189 1378312_at AI070065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070065 /DB_XREF=gi:3396316 /DB_XREF=UI-R-Y0-ls-a-03-0-UI.s1 /CLONE=UI-R-Y0-ls-a-03-0-UI /FEA=EST /CNT=4 /TID=Rn.39216.1 /TIER=ConsEnd /STK=3 /UG=Rn.39216 /UG_TITLE=ESTs AI070065 major facilitator superfamily domain containing 9 Mfsd9 316356 NM_001108215 0015904 // tetracycline transport // inferred from electronic annotation /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0015520 // tetracycline:hydrogen antiporter activity // inferred from electronic annotation 1378313_at BI299600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299600 /DB_XREF=gi:14975880 /DB_XREF=UI-R-CV2-chj-b-02-0-UI.s1 /CLONE=UI-R-CV2-chj-b-02-0-UI /FEA=EST /CNT=4 /TID=Rn.76789.1 /TIER=ConsEnd /STK=3 /UG=Rn.76789 /UG_TITLE=ESTs BI299600 1378314_at AA956277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956277 /DB_XREF=gi:4238671 /DB_XREF=UI-R-E1-fh-e-06-0-UI.s1 /CLONE=UI-R-E1-fh-e-06-0-UI /FEA=EST /CNT=4 /TID=Rn.22327.1 /TIER=ConsEnd /STK=3 /UG=Rn.22327 /UG_TITLE=ESTs AA956277 1378315_at AI045116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045116 /DB_XREF=gi:3291935 /DB_XREF=UI-R-C1-kg-c-06-0-UI.s1 /CLONE=UI-R-C1-kg-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.16113.1 /TIER=ConsEnd /STK=3 /UG=Rn.16113 /UG_TITLE=ESTs AI045116 1378316_at AI145009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145009 /DB_XREF=gi:3666808 /DB_XREF=UI-R-BT0-pr-c-08-0-UI.s1 /CLONE=UI-R-BT0-pr-c-08-0-UI /FEA=EST /CNT=4 /TID=Rn.22772.1 /TIER=ConsEnd /STK=3 /UG=Rn.22772 /UG_TITLE=ESTs AI145009 1378317_at BI282595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282595 /DB_XREF=gi:14933522 /DB_XREF=UI-R-DD0-bzy-h-07-0-UI.s1 /CLONE=UI-R-DD0-bzy-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.40671.1 /TIER=ConsEnd /STK=3 /UG=Rn.40671 /UG_TITLE=ESTs BI282595 keratin 78 Krt78 315324 XM_001067238 /// XM_002729849 0005515 // protein binding // not recorded 1378318_at BF420065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420065 /DB_XREF=gi:11408054 /DB_XREF=UI-R-BJ2-bpm-e-07-0-UI.s1 /CLONE=UI-R-BJ2-bpm-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.27313.1 /TIER=ConsEnd /STK=3 /UG=Rn.27313 /UG_TITLE=ESTs BF420065 WD repeat domain 53 Wdr53 498097 NM_001109055 1378319_at BM390051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390051 /DB_XREF=gi:18190104 /DB_XREF=UI-R-CN1-cjo-h-01-0-UI.s1 /CLONE=UI-R-CN1-cjo-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.82370.1 /TIER=ConsEnd /STK=1 /UG=Rn.82370 /UG_TITLE=ESTs BM390051 Lck interacting transmembrane adaptor 1 /// zinc finger, CCCH-type with G patch domain Lime1 /// Zgpat 296478 /// 362289 NM_001009656 /// NM_001108614 0006350 // transcription // inferred from electronic annotation /// 0007175 // negative regulation of epidermal growth factor receptor activity // not recorded /// 0007175 // negative regulation of epidermal growth factor receptor activity // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1378320_at BG373845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373845 /DB_XREF=gi:13298317 /DB_XREF=UI-R-CV1-bsk-e-08-0-UI.s1 /CLONE=UI-R-CV1-bsk-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.41007.1 /TIER=ConsEnd /STK=3 /UG=Rn.41007 /UG_TITLE=ESTs BG373845 retinaldehyde binding protein 1 Rlbp1 293049 NM_001106274 0006810 // transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005502 // 11-cis retinal binding // not recorded 1378321_at BG375029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375029 /DB_XREF=gi:13299501 /DB_XREF=UI-R-CV1-bst-c-08-0-UI.s1 /CLONE=UI-R-CV1-bst-c-08-0-UI /FEA=EST /CNT=4 /TID=Rn.73064.1 /TIER=ConsEnd /STK=3 /UG=Rn.73064 /UG_TITLE=ESTs BG375029 Ras association (RalGDS/AF-6) domain family member 4 Rassf4 362423 NM_001024275 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1378322_at BM385592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385592 /DB_XREF=gi:18185645 /DB_XREF=UI-R-DM1-ckd-m-16-0-UI.s1 /CLONE=UI-R-DM1-ckd-m-16-0-UI /FEA=EST /CNT=4 /TID=Rn.23085.1 /TIER=ConsEnd /STK=3 /UG=Rn.23085 /UG_TITLE=ESTs, Weakly similar to KIAA0943 protein (Homo sapiens) (H.sapiens) BM385592 similar to CG5645-PA LOC687183 687183 XM_002727010 1378323_at AW524892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524892 /DB_XREF=gi:7167277 /DB_XREF=UI-R-BO0-aid-e-05-0-UI.s1 /CLONE=UI-R-BO0-aid-e-05-0-UI /FEA=EST /CNT=4 /TID=Rn.45515.1 /TIER=ConsEnd /STK=3 /UG=Rn.45515 /UG_TITLE=ESTs AW524892 nucleolar protein 4 Nol4 307553 NM_001107401 1378324_at BE120389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120389 /DB_XREF=gi:8512494 /DB_XREF=UI-R-CA0-baq-h-01-0-UI.s1 /CLONE=UI-R-CA0-baq-h-01-0-UI /FEA=EST /CNT=4 /TID=Rn.28347.1 /TIER=ConsEnd /STK=3 /UG=Rn.28347 /UG_TITLE=ESTs BE120389 tetratricopeptide repeat domain 30B Ttc30b 499814 NM_001127607 0030030 // cell projection organization // inferred from electronic annotation 0005929 // cilium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1378325_at BE098737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098737 /DB_XREF=gi:8490606 /DB_XREF=UI-R-BJ1-atd-d-01-0-UI.s1 /CLONE=UI-R-BJ1-atd-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.4272.1 /TIER=ConsEnd /STK=3 /UG=Rn.4272 /UG_TITLE=ESTs, Highly similar to 14P_HUMAN PROTEIN 1-4 (H.sapiens) BE098737 1378326_at AW435059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435059 /DB_XREF=gi:6966366 /DB_XREF=UI-R-BJ0p-afy-b-05-0-UI.s1 /CLONE=UI-R-BJ0p-afy-b-05-0-UI /FEA=EST /CNT=4 /TID=Rn.24873.1 /TIER=ConsEnd /STK=3 /UG=Rn.24873 /UG_TITLE=ESTs AW435059 TruB pseudouridine (psi) synthase homolog 2 (E. coli) Trub2 366012 NM_001014257 0001522 // pseudouridine synthesis // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0009451 // RNA modification // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0009982 // pseudouridine synthase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1378327_at AA963348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963348 /DB_XREF=gi:4278272 /DB_XREF=UI-R-E1-ga-f-04-0-UI.s1 /CLONE=UI-R-E1-ga-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.11448.1 /TIER=ConsEnd /STK=3 /UG=Rn.11448 /UG_TITLE=ESTs AA963348 doublesex and mab-3 related transcription factor 2 Dmrt2 309430 NM_001107597 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007548 // sex differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1378328_at AI169255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169255 /DB_XREF=gi:3705563 /DB_XREF=EST215090 /CLONE=RKIBP36 /FEA=EST /CNT=4 /TID=Rn.28012.1 /TIER=ConsEnd /STK=3 /UG=Rn.28012 /UG_TITLE=ESTs AI169255 1378329_at BF419525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419525 /DB_XREF=gi:11407514 /DB_XREF=UI-R-CA0-bns-h-09-0-UI.s1 /CLONE=UI-R-CA0-bns-h-09-0-UI /FEA=EST /CNT=4 /TID=Rn.47606.1 /TIER=ConsEnd /STK=3 /UG=Rn.47606 /UG_TITLE=ESTs BF419525 1378330_at BI273834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI273834 /DB_XREF=gi:14884174 /DB_XREF=UI-R-CW0-bvz-e-05-0-UI.s1 /CLONE=UI-R-CW0-bvz-e-05-0-UI /FEA=EST /CNT=4 /TID=Rn.39156.1 /TIER=ConsEnd /STK=3 /UG=Rn.39156 /UG_TITLE=ESTs BI273834 1378331_at AI703716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI703716 /DB_XREF=gi:4991616 /DB_XREF=UI-R-AB1-yx-c-03-0-UI.s1 /CLONE=UI-R-AB1-yx-c-03-0-UI /FEA=EST /CNT=4 /TID=Rn.41045.1 /TIER=ConsEnd /STK=3 /UG=Rn.41045 /UG_TITLE=ESTs AI703716 Mesoderm development candidate 2 Mesdc2 308796 NM_001008345 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation 1378332_at AA956804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956804 /DB_XREF=gi:4239278 /DB_XREF=UI-R-E1-ft-a-08-0-UI.s1 /CLONE=UI-R-E1-ft-a-08-0-UI /FEA=EST /CNT=4 /TID=Rn.23326.1 /TIER=ConsEnd /STK=3 /UG=Rn.23326 /UG_TITLE=ESTs AA956804 Kruppel-like factor 3 (basic) Klf3 114845 NM_001105742 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1378333_at BI284174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284174 /DB_XREF=gi:14936614 /DB_XREF=UI-R-CX0s-ccn-a-11-0-UI.s1 /CLONE=UI-R-CX0s-ccn-a-11-0-UI /FEA=EST /CNT=4 /TID=Rn.50362.1 /TIER=ConsEnd /STK=3 /UG=Rn.50362 /UG_TITLE=ESTs BI284174 1378334_a_at BF417289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417289 /DB_XREF=gi:11405278 /DB_XREF=UI-R-CN0-bky-c-09-0-UI.s1 /CLONE=UI-R-CN0-bky-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.11827.2 /TIER=ConsEnd /STK=2 /UG=Rn.11827 /UG_TITLE=ESTs BF417289 1378335_at AI599367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599367 /DB_XREF=gi:4608415 /DB_XREF=EST251070 /CLONE=REMEN50 /FEA=EST /CNT=4 /TID=Rn.23631.1 /TIER=ConsEnd /STK=3 /UG=Rn.23631 /UG_TITLE=ESTs, Weakly similar to JE0163 myelin expression factor-3 - mouse (M.musculus) AI599367 1378336_at AI144907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144907 /DB_XREF=gi:3666706 /DB_XREF=UI-R-BT0-pp-c-10-0-UI.s1 /CLONE=UI-R-BT0-pp-c-10-0-UI /FEA=EST /CNT=4 /TID=Rn.23815.1 /TIER=ConsEnd /STK=3 /UG=Rn.23815 /UG_TITLE=ESTs AI144907 1378337_at BF284712 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284712 /DB_XREF=gi:11215782 /DB_XREF=EST449303 /CLONE=RGIEV27 /FEA=EST /CNT=4 /TID=Rn.21596.1 /TIER=ConsEnd /STK=3 /UG=Rn.21596 /UG_TITLE=ESTs, Weakly similar to MATRIN 3 (R.norvegicus) BF284712 RNA binding motif protein 20 Rbm20 309544 NM_001107611 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1378338_at BE103735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103735 /DB_XREF=gi:8495835 /DB_XREF=UI-R-BX0-arp-a-02-0-UI.s1 /CLONE=UI-R-BX0-arp-a-02-0-UI /FEA=EST /CNT=4 /TID=Rn.16748.1 /TIER=ConsEnd /STK=3 /UG=Rn.16748 /UG_TITLE=ESTs BE103735 AMME chromosomal region gene 1-like Ammecr1l 307526 NM_001107399 1378339_at BM390636 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390636 /DB_XREF=gi:18190689 /DB_XREF=UI-R-CN1-cjr-e-12-0-UI.s1 /CLONE=UI-R-CN1-cjr-e-12-0-UI /FEA=EST /CNT=4 /TID=Rn.20939.1 /TIER=ConsEnd /STK=3 /UG=Rn.20939 /UG_TITLE=ESTs BM390636 rCG52099-like LOC100366259 100366259 XM_002725118 1378340_at AI639305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639305 /DB_XREF=gi:4700339 /DB_XREF=rx00657s /CLONE=rx00657 /FEA=EST /CNT=4 /TID=Rn.20632.1 /TIER=ConsEnd /STK=3 /UG=Rn.20632 /UG_TITLE=ESTs AI639305 hypothetical LOC100363796 LOC100363796 100363796 XR_085609 1378341_at AI101125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101125 /DB_XREF=gi:4133979 /DB_XREF=EST210414 /CLONE=RBRBF83 /FEA=EST /CNT=4 /TID=Rn.29890.1 /TIER=ConsEnd /STK=3 /UG=Rn.29890 /UG_TITLE=ESTs AI101125 1378342_at BF284819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284819 /DB_XREF=gi:11215889 /DB_XREF=EST449410 /CLONE=RGIEW75 /FEA=EST /CNT=4 /TID=Rn.22472.1 /TIER=ConsEnd /STK=3 /UG=Rn.22472 /UG_TITLE=ESTs BF284819 endothelin receptor type A Ednra 24326 NM_012550 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // not recorded /// 0008217 // regulation of blood pressure // not recorded /// 0014032 // neural crest cell development // inferred from electronic annotation /// 0014032 // neural crest cell development // not recorded /// 0014824 // artery smooth muscle contraction // inferred from electronic annotation /// 0014824 // artery smooth muscle contraction // not recorded /// 0015758 // glucose transport // inferred from electronic annotation /// 0015758 // glucose transport // not recorded /// 0030818 // negative regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0030818 // negative regulation of cAMP biosynthetic process // not recorded /// 0042310 // vasoconstriction // inferred from mutant phenotype /// 0042310 // vasoconstriction // not recorded /// 0042310 // vasoconstriction // inferred from electronic annotation /// 0043278 // response to morphine // inferred from mutant phenotype /// 0050678 // regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0050729 // positive regulation of inflammatory response // inferred from mutant phenotype /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from mutant phenotype /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // inferred from mutant phenotype /// 0051928 // positive regulation of calcium ion transport // inferred from mutant phenotype 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030315 // T-tubule // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay 0001599 // endothelin-A receptor activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004962 // endothelin receptor activity // not recorded /// 0004962 // endothelin receptor activity // traceable author statement /// 0004962 // endothelin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378343_at BF405132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405132 /DB_XREF=gi:11393107 /DB_XREF=UI-R-CA1-biq-a-10-0-UI.s1 /CLONE=UI-R-CA1-biq-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.38055.1 /TIER=ConsEnd /STK=3 /UG=Rn.38055 /UG_TITLE=ESTs, Highly similar to T12531 hypothetical protein DKFZp434B194.1 (H.sapiens) BF405132 tuftelin interacting protein 11 Tfip11 288718 NM_001008291 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0031214 // biomineral tissue development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded /// 0005681 // spliceosomal complex // inferred from sequence or structural similarity /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1378344_at BF289238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289238 /DB_XREF=gi:11220308 /DB_XREF=EST453829 /CLONE=RGIHC60 /FEA=EST /CNT=4 /TID=Rn.55739.1 /TIER=ConsEnd /STK=3 /UG=Rn.55739 /UG_TITLE=ESTs BF289238 1378345_at BF389196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389196 /DB_XREF=gi:11374026 /DB_XREF=UI-R-BS2-bdl-h-07-0-UI.s1 /CLONE=UI-R-BS2-bdl-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.19163.1 /TIER=ConsEnd /STK=3 /UG=Rn.19163 /UG_TITLE=ESTs BF389196 2-oxoglutarate and iron-dependent oxygenase domain containing 1 Ogfod1 307657 NM_001107411 0055114 // oxidation reduction // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0016706 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation 1378346_at AI385237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385237 /DB_XREF=gi:4198019 /DB_XREF=UI-R-E0-bp-b-06-0-UI.s2 /CLONE=UI-R-E0-bp-b-06-0-UI /FEA=EST /CNT=4 /TID=Rn.32593.1 /TIER=ConsEnd /STK=3 /UG=Rn.32593 /UG_TITLE=ESTs AI385237 1378347_at AW252020 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252020 /DB_XREF=gi:6595611 /DB_XREF=UI-R-BJ0-adj-b-10-0-UI.s1 /CLONE=UI-R-BJ0-adj-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.41242.1 /TIER=ConsEnd /STK=3 /UG=Rn.41242 /UG_TITLE=ESTs AW252020 1378348_at AI764000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764000 /DB_XREF=gi:5209935 /DB_XREF=UI-R-Y0-acv-f-11-0-UI.s1 /CLONE=UI-R-Y0-acv-f-11-0-UI /FEA=EST /CNT=4 /TID=Rn.41950.1 /TIER=ConsEnd /STK=3 /UG=Rn.41950 /UG_TITLE=ESTs AI764000 transmembrane protein 200C Tmem200c 501201 XM_001054710 /// XM_576628 1378349_at AI706429 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI706429 /DB_XREF=gi:4994329 /DB_XREF=UI-R-AA1-zx-b-01-0-UI.s1 /CLONE=UI-R-AA1-zx-b-01-0-UI /FEA=EST /CNT=4 /TID=Rn.44796.1 /TIER=ConsEnd /STK=3 /UG=Rn.44796 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) AI706429 rCG46571-like LOC100364822 100364822 XM_002724876 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1378350_at AA859902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859902 /DB_XREF=gi:4230439 /DB_XREF=UI-R-E0-cg-a-06-0-UI.s1 /CLONE=UI-R-E0-cg-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.811.1 /TIER=ConsEnd /STK=3 /UG=Rn.811 /UG_TITLE=ESTs AA859902 1378351_at BF394244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394244 /DB_XREF=gi:11379108 /DB_XREF=UI-R-CA0-bhc-e-01-0-UI.s1 /CLONE=UI-R-CA0-bhc-e-01-0-UI /FEA=EST /CNT=4 /TID=Rn.58251.1 /TIER=ConsEnd /STK=3 /UG=Rn.58251 /UG_TITLE=ESTs BF394244 1378352_at BM392166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392166 /DB_XREF=gi:18192219 /DB_XREF=UI-R-DO1-ckp-g-24-0-UI.s1 /CLONE=UI-R-DO1-ckp-g-24-0-UI /FEA=EST /CNT=4 /TID=Rn.27848.1 /TIER=ConsEnd /STK=3 /UG=Rn.27848 /UG_TITLE=ESTs BM392166 golgi phosphoprotein 3-like Golph3l 310669 NM_001007698 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 1378353_at AI180459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180459 /DB_XREF=gi:3731097 /DB_XREF=EST224205 /CLONE=RSPCX95 /FEA=EST /CNT=4 /TID=Rn.29418.1 /TIER=ConsEnd /STK=3 /UG=Rn.29418 /UG_TITLE=ESTs, Highly similar to T17453 ERG-associated protein ESET - mouse (M.musculus) AI180459 SET domain, bifurcated 1 Setdb1 689883 XM_002726023 /// XM_002729082 0001833 // inner cell mass cell proliferation // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation 1378354_at AI176056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176056 /DB_XREF=gi:3726694 /DB_XREF=EST219632 /CLONE=ROVBJ95 /FEA=EST /CNT=4 /TID=Rn.33919.1 /TIER=ConsEnd /STK=3 /UG=Rn.33919 /UG_TITLE=ESTs AI176056 1378355_a_at AI556625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556625 /DB_XREF=gi:4488988 /DB_XREF=UI-R-C2p-ri-e-08-0-UI.s1 /CLONE=UI-R-C2p-ri-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.38431.1 /TIER=ConsEnd /STK=3 /UG=Rn.38431 /UG_TITLE=ESTs AI556625 solute carrier family 24 (sodium/potassium/calcium exchanger), member 4 Slc24a4 314396 NM_001108051 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1378356_at AI556625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556625 /DB_XREF=gi:4488988 /DB_XREF=UI-R-C2p-ri-e-08-0-UI.s1 /CLONE=UI-R-C2p-ri-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.38431.1 /TIER=ConsEnd /STK=3 /UG=Rn.38431 /UG_TITLE=ESTs AI556625 solute carrier family 24 (sodium/potassium/calcium exchanger), member 4 Slc24a4 314396 NM_001108051 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1378357_at AI556522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556522 /DB_XREF=gi:4488885 /DB_XREF=UI-R-C2p-rl-c-06-0-UI.s1 /CLONE=UI-R-C2p-rl-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.35301.1 /TIER=ConsEnd /STK=3 /UG=Rn.35301 /UG_TITLE=ESTs AI556522 1378358_at AI710449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI710449 /DB_XREF=gi:5000225 /DB_XREF=UI-R-AG1-aak-a-06-0-UI.s1 /CLONE=UI-R-AG1-aak-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.41108.1 /TIER=ConsEnd /STK=3 /UG=Rn.41108 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) AI710449 Replication initiator 1 Repin1 445541 NM_001005893 0006260 // DNA replication // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378359_at AI072632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072632 /DB_XREF=gi:3398826 /DB_XREF=UI-R-C2-nn-f-09-0-UI.s1 /CLONE=UI-R-C2-nn-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.18364.1 /TIER=ConsEnd /STK=3 /UG=Rn.18364 /UG_TITLE=ESTs AI072632 NFKB repressing factor Nkrf 298316 XM_002727672 /// XM_233308 0016481 // negative regulation of transcription // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // not recorded 1378360_at BF397301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397301 /DB_XREF=gi:11382284 /DB_XREF=UI-R-BS2-bek-g-04-0-UI.s1 /CLONE=UI-R-BS2-bek-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.58794.1 /TIER=ConsEnd /STK=3 /UG=Rn.58794 /UG_TITLE=ESTs BF397301 1378361_at BF523068 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523068 /DB_XREF=gi:11630993 /DB_XREF=UI-R-C3-sh-c-03-0-UI.r1 /CLONE=UI-R-C3-sh-c-03-0-UI /FEA=EST /CNT=4 /TID=Rn.32434.1 /TIER=ConsEnd /STK=3 /UG=Rn.32434 /UG_TITLE=ESTs, Weakly similar to T46375 hypothetical protein DKFZp434D1319.1 (H.sapiens) BF523068 0006333 // chromatin assembly or disassembly // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1378362_at BG374818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374818 /DB_XREF=gi:13299290 /DB_XREF=UI-R-CV1-bsv-g-05-0-UI.s1 /CLONE=UI-R-CV1-bsv-g-05-0-UI /FEA=EST /CNT=4 /TID=Rn.66094.1 /TIER=ConsEnd /STK=3 /UG=Rn.66094 /UG_TITLE=ESTs, Weakly similar to 1917150A collagen:SUBUNIT=alpha1:ISOTYPE=VIII (R.norvegicus) BG374818 complement component 1, q subcomponent-like 3 C1ql3 680404 NM_001109403 0005515 // protein binding // not recorded 1378363_at BF404637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404637 /DB_XREF=gi:11392612 /DB_XREF=UI-R-CA1-bih-h-03-0-UI.s1 /CLONE=UI-R-CA1-bih-h-03-0-UI /FEA=EST /CNT=4 /TID=Rn.63815.1 /TIER=ConsEnd /STK=3 /UG=Rn.63815 /UG_TITLE=ESTs BF404637 1378364_at AW144070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144070 /DB_XREF=gi:6163969 /DB_XREF=EST294366 /CLONE=RGICG68 /FEA=EST /CNT=4 /TID=Rn.40286.1 /TIER=ConsEnd /STK=3 /UG=Rn.40286 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) AW144070 zinc finger protein 668 Znf668 309002 NM_001107553 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1378365_at AW529483 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529483 /DB_XREF=gi:7171897 /DB_XREF=UI-R-BT1-akk-g-10-0-UI.s1 /CLONE=UI-R-BT1-akk-g-10-0-UI /FEA=EST /CNT=4 /TID=Rn.41289.1 /TIER=ConsEnd /STK=3 /UG=Rn.41289 /UG_TITLE=ESTs AW529483 1378366_at BF386485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386485 /DB_XREF=gi:11371350 /DB_XREF=UI-R-CA1-bbe-e-07-0-UI.s1 /CLONE=UI-R-CA1-bbe-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.61977.1 /TIER=ConsEnd /STK=3 /UG=Rn.61977 /UG_TITLE=ESTs BF386485 1378367_at BF389087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389087 /DB_XREF=gi:11373914 /DB_XREF=UI-R-BS2-bdh-f-09-0-UI.s1 /CLONE=UI-R-BS2-bdh-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.61074.1 /TIER=ConsEnd /STK=3 /UG=Rn.61074 /UG_TITLE=ESTs BF389087 1378368_at BF402723 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402723 /DB_XREF=gi:11390698 /DB_XREF=UI-R-CA0-bho-h-01-0-UI.s1 /CLONE=UI-R-CA0-bho-h-01-0-UI /FEA=EST /CNT=4 /TID=Rn.42270.1 /TIER=ConsEnd /STK=3 /UG=Rn.42270 /UG_TITLE=ESTs, Weakly similar to T14794 hypothetical protein DKFZp586P1522.1 (H.sapiens) BF402723 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1378369_at BE107150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107150 /DB_XREF=gi:8499255 /DB_XREF=UI-R-BS1-ayq-d-09-0-UI.s1 /CLONE=UI-R-BS1-ayq-d-09-0-UI /FEA=EST /CNT=4 /TID=Rn.51122.1 /TIER=ConsEnd /STK=3 /UG=Rn.51122 /UG_TITLE=ESTs BE107150 dapper, antagonist of beta-catenin, homolog 1 (Xenopus laevis) Dact1 500666 XM_001077448 /// XM_002726752 /// XM_002729635 /// XM_576044 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded 1378370_at BF401705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401705 /DB_XREF=gi:11389680 /DB_XREF=UI-R-CA0-bgn-f-09-0-UI.s1 /CLONE=UI-R-CA0-bgn-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.20112.1 /TIER=ConsEnd /STK=3 /UG=Rn.20112 /UG_TITLE=ESTs BF401705 1378371_at BE099730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099730 /DB_XREF=gi:8491610 /DB_XREF=UI-R-BJ1-atk-f-05-0-UI.s1 /CLONE=UI-R-BJ1-atk-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.49214.1 /TIER=ConsEnd /STK=3 /UG=Rn.49214 /UG_TITLE=ESTs BE099730 ataxin 2 binding protein 1 A2bp1 302920 NM_001106974 0005737 // cytoplasm // not recorded /// 0005802 // trans-Golgi network // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded 1378372_at AI574994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI574994 /DB_XREF=gi:4544990 /DB_XREF=UI-R-G0-ug-g-09-0-UI.s1 /CLONE=UI-R-G0-ug-g-09-0-UI /FEA=EST /CNT=4 /TID=Rn.34650.1 /TIER=ConsEnd /STK=3 /UG=Rn.34650 /UG_TITLE=ESTs AI574994 1378373_at BF522207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522207 /DB_XREF=gi:11630174 /DB_XREF=UI-R-C2p-ns-a-07-0-UI.r1 /CLONE=UI-R-C2p-ns-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.27130.1 /TIER=ConsEnd /STK=3 /UG=Rn.27130 /UG_TITLE=ESTs BF522207 1378374_at BE100748 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100748 /DB_XREF=gi:8492611 /DB_XREF=UI-R-BJ1-atu-e-07-0-UI.s1 /CLONE=UI-R-BJ1-atu-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.19611.1 /TIER=ConsEnd /STK=3 /UG=Rn.19611 /UG_TITLE=ESTs BE100748 similar to expressed sequence AU021034 RGD1560137 290372 XR_008828 /// XR_086030 1378375_at AI501575 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501575 /DB_XREF=gi:4399426 /DB_XREF=UI-R-C2p-sc-g-06-0-UI.s1 /CLONE=UI-R-C2p-sc-g-06-0-UI /FEA=EST /CNT=4 /TID=Rn.22095.1 /TIER=ConsEnd /STK=3 /UG=Rn.22095 /UG_TITLE=ESTs, Weakly similar to T22490 hypothetical protein Y37A1B.1 - Caenorhabditis elegans (C.elegans) AI501575 Cell division cycle and apoptosis regulator 1 Ccar1 361849 NM_001108535 0008380 // RNA splicing // not recorded /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005794 // Golgi apparatus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1378376_at AI548933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548933 /DB_XREF=gi:4466421 /DB_XREF=UI-R-C3-tw-a-12-0-UI.s1 /CLONE=UI-R-C3-tw-a-12-0-UI /FEA=EST /CNT=4 /TID=Rn.43564.1 /TIER=ConsEnd /STK=3 /UG=Rn.43564 /UG_TITLE=ESTs AI548933 cysteine-rich hydrophobic domain 2 Chic2 83835 NM_001105736 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005798 // Golgi-associated vesicle // inferred from electronic annotation /// 0005798 // Golgi-associated vesicle // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378377_at BF552453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552453 /DB_XREF=gi:11662183 /DB_XREF=UI-R-C2p-oj-a-07-0-UI.r1 /CLONE=UI-R-C2p-oj-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.27344.1 /TIER=ConsEnd /STK=3 /UG=Rn.27344 /UG_TITLE=ESTs BF552453 dual adaptor of phosphotyrosine and 3-phosphoinositides Dapp1 362046 NM_001108568 0005886 // plasma membrane // not recorded /// 0005942 // phosphoinositide 3-kinase complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // not recorded /// 0035014 // phosphoinositide 3-kinase regulator activity // inferred from electronic annotation /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // not recorded 1378378_at BI276838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276838 /DB_XREF=gi:14922134 /DB_XREF=UI-R-CX0-bxm-a-10-0-UI.s1 /CLONE=UI-R-CX0-bxm-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.66700.1 /TIER=ConsEnd /STK=3 /UG=Rn.66700 /UG_TITLE=ESTs BI276838 pantothenate kinase 2 (Hallervorden-Spatz syndrome) Pank2 296167 NM_001106513 0015937 // coenzyme A biosynthetic process // inferred from electronic annotation 0004594 // pantothenate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1378379_at AI501246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501246 /DB_XREF=gi:4399097 /DB_XREF=UI-R-C2p-ry-e-04-0-UI.s1 /CLONE=UI-R-C2p-ry-e-04-0-UI /FEA=EST /CNT=4 /TID=Rn.52316.1 /TIER=ConsEnd /STK=3 /UG=Rn.52316 /UG_TITLE=ESTs, Weakly similar to COXZ_HUMAN CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX11, MITOCHONDRIAL PRECURSOR (H.sapiens) AI501246 COX11 homolog, cytochrome c oxidase assembly protein (yeast) Cox11 690300 NM_001109575 0005739 // mitochondrion // not recorded 0005507 // copper ion binding // inferred from electronic annotation 1378380_at BE098920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098920 /DB_XREF=gi:8490794 /DB_XREF=UI-R-BJ1-atg-d-01-0-UI.s1 /CLONE=UI-R-BJ1-atg-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.18543.1 /TIER=ConsEnd /STK=3 /UG=Rn.18543 /UG_TITLE=ESTs BE098920 p21 protein (Cdc42/Rac)-activated kinase 4 Pak4 292756 NM_001106238 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1378381_x_at BF552442 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552442 /DB_XREF=gi:11662172 /DB_XREF=UI-R-C2p-oi-g-08-0-UI.r1 /CLONE=UI-R-C2p-oi-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.39229.1 /TIER=ConsEnd /STK=3 /UG=Rn.39229 /UG_TITLE=ESTs BF552442 1378382_at AI230014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230014 /DB_XREF=gi:3813901 /DB_XREF=EST226709 /CLONE=REMCP66 /FEA=EST /CNT=4 /TID=Rn.23489.1 /TIER=ConsEnd /STK=3 /UG=Rn.23489 /UG_TITLE=ESTs AI230014 Phosphoglycerate mutase family member 5 Pgam5 288731 NM_001025272 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1378383_at AI072358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072358 /DB_XREF=gi:3398552 /DB_XREF=UI-R-C2-ng-f-12-0-UI.s1 /CLONE=UI-R-C2-ng-f-12-0-UI /FEA=EST /CNT=4 /TID=Rn.24829.1 /TIER=ConsEnd /STK=3 /UG=Rn.24829 /UG_TITLE=ESTs AI072358 transmembrane inner ear Tmie 501061 NM_001109299 0007605 // sensory perception of sound // not recorded /// 0042472 // inner ear morphogenesis // not recorded 1378384_at AW531141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531141 /DB_XREF=gi:7173555 /DB_XREF=UI-R-BT1-akv-b-11-0-UI.s1 /CLONE=UI-R-BT1-akv-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.47648.1 /TIER=ConsEnd /STK=3 /UG=Rn.47648 /UG_TITLE=ESTs AW531141 Integrator complex subunit 6 Ints6 361057 NM_001047904 0016180 // snRNA processing // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0015629 // actin cytoskeleton // not recorded /// 0032039 // integrator complex // not recorded 0005515 // protein binding // not recorded 1378385_at AI548474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548474 /DB_XREF=gi:4465962 /DB_XREF=UI-R-C3-tl-g-03-0-UI.s1 /CLONE=UI-R-C3-tl-g-03-0-UI /FEA=EST /CNT=4 /TID=Rn.22575.1 /TIER=ConsEnd /STK=3 /UG=Rn.22575 /UG_TITLE=ESTs AI548474 1378386_at AA943262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943262 /DB_XREF=gi:3103178 /DB_XREF=EST198761 /CLONE=RBRAH28 /FEA=EST /CNT=6 /TID=Rn.7537.1 /TIER=ConsEnd /STK=3 /UG=Rn.7537 /UG_TITLE=ESTs, Weakly similar to GLUCOSE TRANSPORTER TYPE 2, LIVER (R.norvegicus) AA943262 solute carrier family 2 (facilitated glucose transporter), member 6 Slc2a6 296600 NM_001106562 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0022891 // substrate-specific transmembrane transporter activity // inferred from electronic annotation 1378387_at BI275245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275245 /DB_XREF=gi:14886900 /DB_XREF=UI-R-CX0-bwr-c-07-0-UI.s1 /CLONE=UI-R-CX0-bwr-c-07-0-UI /FEA=EST /CNT=5 /TID=Rn.19493.1 /TIER=ConsEnd /STK=3 /UG=Rn.19493 /UG_TITLE=ESTs BI275245 TERF1 (TRF1)-interacting nuclear factor 2 Tinf2 290232 NM_001006962 0000723 // telomere maintenance // not recorded /// 0000723 // telomere maintenance // inferred from electronic annotation /// 0010833 // telomere maintenance via telomere lengthening // inferred from electronic annotation /// 0010833 // telomere maintenance via telomere lengthening // not recorded /// 0010836 // negative regulation of protein ADP-ribosylation // inferred from electronic annotation /// 0010836 // negative regulation of protein ADP-ribosylation // not recorded /// 0032202 // telomere assembly // inferred from electronic annotation /// 0032202 // telomere assembly // not recorded /// 0032206 // positive regulation of telomere maintenance // inferred from electronic annotation /// 0032206 // positive regulation of telomere maintenance // not recorded /// 0032211 // negative regulation of telomere maintenance via telomerase // not recorded /// 0034502 // protein localization to chromosome // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0070198 // protein localization to chromosome, telomeric region // inferred from electronic annotation /// 0070198 // protein localization to chromosome, telomeric region // not recorded 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0000781 // chromosome, telomeric region // not recorded /// 0000783 // nuclear telomere cap complex // inferred from electronic annotation /// 0000783 // nuclear telomere cap complex // not recorded /// 0005654 // nucleoplasm // not recorded /// 0010370 // perinucleolar chromocenter // inferred from electronic annotation /// 0010370 // perinucleolar chromocenter // not recorded 0003677 // DNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042162 // telomeric DNA binding // not recorded /// 0042162 // telomeric DNA binding // inferred from sequence or structural similarity /// 0042162 // telomeric DNA binding // inferred from electronic annotation 1378388_at BI290092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290092 /DB_XREF=gi:14948338 /DB_XREF=UI-R-DK0-cfr-g-03-0-UI.s1 /CLONE=UI-R-DK0-cfr-g-03-0-UI /FEA=EST /CNT=5 /TID=Rn.26947.1 /TIER=ConsEnd /STK=3 /UG=Rn.26947 /UG_TITLE=ESTs BI290092 1378389_at BM385157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385157 /DB_XREF=gi:18185210 /DB_XREF=UI-R-CN1-cjm-l-02-0-UI.s2 /CLONE=UI-R-CN1-cjm-l-02-0-UI /FEA=EST /CNT=5 /TID=Rn.8800.1 /TIER=ConsEnd /STK=3 /UG=Rn.8800 /UG_TITLE=ESTs BM385157 1378390_at AI071169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071169 /DB_XREF=gi:3397384 /DB_XREF=UI-R-C2-my-c-02-0-UI.s1 /CLONE=UI-R-C2-my-c-02-0-UI /FEA=EST /CNT=5 /TID=Rn.21896.1 /TIER=ConsEnd /STK=3 /UG=Rn.21896 /UG_TITLE=ESTs, Weakly similar to CGB1 RAT G2MITOTIC-SPECIFIC CYCLIN B1 (R.norvegicus) AI071169 1378391_at AI511069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511069 /DB_XREF=gi:4416768 /DB_XREF=UI-R-C2p-oe-g-05-0-UI.s1 /CLONE=UI-R-C2p-oe-g-05-0-UI /FEA=EST /CNT=5 /TID=Rn.41288.1 /TIER=ConsEnd /STK=3 /UG=Rn.41288 /UG_TITLE=ESTs AI511069 1378392_at BG377107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377107 /DB_XREF=gi:13301619 /DB_XREF=UI-R-CU0-bvb-a-05-0-UI.s1 /CLONE=UI-R-CU0-bvb-a-05-0-UI /FEA=EST /CNT=5 /TID=Rn.35487.1 /TIER=ConsEnd /STK=3 /UG=Rn.35487 /UG_TITLE=ESTs, Weakly similar to S42091 Tid(56) protein - fruit fly (D.melanogaster) BG377107 DnaJ (Hsp40) homolog, subfamily A, member 3 Dnaja3 360481 NM_001038595 /// NM_001038596 0006264 // mitochondrial DNA replication // inferred from electronic annotation /// 0006264 // mitochondrial DNA replication // not recorded /// 0006457 // protein folding // inferred from electronic annotation /// 0006457 // protein folding // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0006924 // activation-induced cell death of T cells // inferred from electronic annotation /// 0006924 // activation-induced cell death of T cells // not recorded /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0007528 // neuromuscular junction development // inferred from electronic annotation /// 0007528 // neuromuscular junction development // not recorded /// 0007569 // cell aging // inferred from electronic annotation /// 0007569 // cell aging // not recorded /// 0008219 // cell death // inferred from electronic annotation /// 0008219 // cell death // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009408 // response to heat // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0031398 // positive regulation of protein ubiquitination // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from direct assay /// 0033077 // T cell differentiation in thymus // inferred from electronic annotation /// 0033077 // T cell differentiation in thymus // not recorded /// 0034341 // response to interferon-gamma // inferred from electronic annotation /// 0034341 // response to interferon-gamma // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043154 // negative regulation of caspase activity // inferred from electronic annotation /// 0043154 // negative regulation of caspase activity // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0050821 // protein stabilization // inferred from electronic annotation /// 0050821 // protein stabilization // not recorded /// 0060336 // negative regulation of interferon-gamma-mediated signaling pathway // inferred from electronic annotation /// 0060336 // negative regulation of interferon-gamma-mediated signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005884 // actin filament // inferred from electronic annotation /// 0005884 // actin filament // not recorded /// 0008385 // IkappaB kinase complex // inferred from electronic annotation /// 0008385 // IkappaB kinase complex // not recorded /// 0033256 // I-kappaB/NF-kappaB complex // inferred from electronic annotation /// 0033256 // I-kappaB/NF-kappaB complex // not recorded /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005083 // small GTPase regulator activity // not recorded /// 0005133 // interferon-gamma receptor binding // inferred from electronic annotation /// 0005133 // interferon-gamma receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051059 // NF-kappaB binding // inferred from electronic annotation /// 0051059 // NF-kappaB binding // not recorded /// 0051082 // unfolded protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // not recorded 1378393_at BF404632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404632 /DB_XREF=gi:11392607 /DB_XREF=UI-R-CA1-bih-g-10-0-UI.s1 /CLONE=UI-R-CA1-bih-g-10-0-UI /FEA=EST /CNT=4 /TID=Rn.60558.1 /TIER=ConsEnd /STK=3 /UG=Rn.60558 /UG_TITLE=ESTs BF404632 cysteine-serine-rich nuclear protein 3 Csrnp3 311093 XM_001056212 /// XM_229993 0043065 // positive regulation of apoptosis // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // not recorded 1378394_at BE113263 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113263 /DB_XREF=gi:8505368 /DB_XREF=UI-R-BJ1-awd-d-08-0-UI.s1 /CLONE=UI-R-BJ1-awd-d-08-0-UI /FEA=EST /CNT=4 /TID=Rn.19546.1 /TIER=ConsEnd /STK=3 /UG=Rn.19546 /UG_TITLE=ESTs, Weakly similar to T33116 probable phosphoesterase (EC 3.1.-.-) B0511.8 - Caenorhabditis elegans (C.elegans) BE113263 metallophosphoesterase 1 Mppe1 361344 NM_001108435 0006506 // GPI anchor biosynthetic process // inferred from sequence or structural similarity /// 0006506 // GPI anchor biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from sequence or structural similarity /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005793 // ER-Golgi intermediate compartment // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005801 // cis-Golgi network // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0033116 // ER-Golgi intermediate compartment membrane // inferred from electronic annotation /// 0070971 // endoplasmic reticulum exit site // inferred from sequence or structural similarity 0008081 // phosphoric diester hydrolase activity // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from sequence or structural similarity /// 0034235 // GPI anchor binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1378395_at BF411826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411826 /DB_XREF=gi:11399815 /DB_XREF=UI-R-BT1-bmw-g-03-0-UI.s1 /CLONE=UI-R-BT1-bmw-g-03-0-UI /FEA=EST /CNT=4 /TID=Rn.16997.1 /TIER=ConsEnd /STK=3 /UG=Rn.16997 /UG_TITLE=ESTs BF411826 1378396_at AI007647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI007647 /DB_XREF=gi:3221479 /DB_XREF=EST202098 /CLONE=RBRAS67 /FEA=EST /CNT=4 /TID=Rn.23485.2 /TIER=ConsEnd /STK=3 /UG=Rn.23485 /UG_TITLE=ESTs AI007647 1378397_at BM385449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385449 /DB_XREF=gi:18185508 /DB_XREF=UI-R-CN1-clv-n-06-0-UI.s1 /CLONE=UI-R-CN1-clv-n-06-0-UI /FEA=EST /CNT=4 /TID=Rn.46347.1 /TIER=ConsEnd /STK=3 /UG=Rn.46347 /UG_TITLE=ESTs BM385449 1378398_at BM385071 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385071 /DB_XREF=gi:18185124 /DB_XREF=UI-R-CN1-cjm-j-11-0-UI.s9 /CLONE=UI-R-CN1-cjm-j-11-0-UI /FEA=EST /CNT=4 /TID=Rn.78194.1 /TIER=ConsEnd /STK=3 /UG=Rn.78194 /UG_TITLE=ESTs BM385071 similar to AVLV472 RGD1563060 291608 NM_001106149 1378399_at BE111635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111635 /DB_XREF=gi:8503740 /DB_XREF=UI-R-BJ1-avv-a-12-0-UI.s1 /CLONE=UI-R-BJ1-avv-a-12-0-UI /FEA=EST /CNT=4 /TID=Rn.50149.1 /TIER=ConsEnd /STK=3 /UG=Rn.50149 /UG_TITLE=ESTs BE111635 similar to RIKEN cDNA 2810453I06 LOC498145 498145 NM_001017485 0005634 // nucleus // inferred from electronic annotation 1378400_at AI170395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170395 /DB_XREF=gi:3710435 /DB_XREF=EST216321 /CLONE=RLUCH77 /FEA=EST /CNT=4 /TID=Rn.15660.1 /TIER=ConsEnd /STK=3 /UG=Rn.15660 /UG_TITLE=ESTs AI170395 family with sequence similarity 122B Fam122b 501647 NM_001166586 1378401_at BE108918 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108918 /DB_XREF=gi:8501023 /DB_XREF=UI-R-BS1-ayz-h-07-0-UI.s1 /CLONE=UI-R-BS1-ayz-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.49155.1 /TIER=ConsEnd /STK=3 /UG=Rn.49155 /UG_TITLE=ESTs BE108918 1378402_at BE109781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109781 /DB_XREF=gi:8501886 /DB_XREF=UI-R-BJ1-aul-b-09-0-UI.s1 /CLONE=UI-R-BJ1-aul-b-09-0-UI /FEA=EST /CNT=4 /TID=Rn.11621.1 /TIER=ConsEnd /STK=3 /UG=Rn.11621 /UG_TITLE=ESTs BE109781 grainyhead-like 3 (Drosophila) Grhl3 298555 NM_001106690 0007389 // pattern specification process // not recorded /// 0007398 // ectoderm development // not recorded /// 0008544 // epidermis development // not recorded /// 0042060 // wound healing // not recorded /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded 1378403_at BF414211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414211 /DB_XREF=gi:11402200 /DB_XREF=UI-R-BJ2-bon-g-01-0-UI.s1 /CLONE=UI-R-BJ2-bon-g-01-0-UI /FEA=EST /CNT=4 /TID=Rn.54158.1 /TIER=ConsEnd /STK=3 /UG=Rn.54158 /UG_TITLE=ESTs, Weakly similar to alpha 3 type IV collagen, isoform 1, precursor; collagen IV, alpha-3 polypeptide (goodpasture antigen) (Homo sapiens) (H.sapiens) BF414211 1378404_at AW435040 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435040 /DB_XREF=gi:6966347 /DB_XREF=UI-R-BJ0p-afv-h-08-0-UI.s1 /CLONE=UI-R-BJ0p-afv-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.42455.1 /TIER=ConsEnd /STK=3 /UG=Rn.42455 /UG_TITLE=ESTs, Weakly similar to S12207 hypothetical protein (M.musculus) AW435040 1378405_at AI170262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170262 /DB_XREF=gi:3710302 /DB_XREF=EST216188 /CLONE=RLUCG24 /FEA=EST /CNT=4 /TID=Rn.28397.1 /TIER=ConsEnd /STK=3 /UG=Rn.28397 /UG_TITLE=ESTs, Highly similar to I38618 zinc finger protein ZNF143 (H.sapiens) AI170262 zinc finger protein 143 Zfp143 361627 NM_001012169 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378406_at BF394636 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394636 /DB_XREF=gi:11379572 /DB_XREF=UI-R-CA0-bfy-a-11-0-UI.s1 /CLONE=UI-R-CA0-bfy-a-11-0-UI /FEA=EST /CNT=4 /TID=Rn.41432.1 /TIER=ConsEnd /STK=3 /UG=Rn.41432 /UG_TITLE=ESTs, Moderately similar to T34567 hypothetical protein DKFZp434A128.1 (H.sapiens) BF394636 1378407_at BF401415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401415 /DB_XREF=gi:11389390 /DB_XREF=UI-R-CA0-bgt-d-04-0-UI.s1 /CLONE=UI-R-CA0-bgt-d-04-0-UI /FEA=EST /CNT=4 /TID=Rn.12458.1 /TIER=ConsEnd /STK=3 /UG=Rn.12458 /UG_TITLE=ESTs BF401415 1378408_at BE107015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107015 /DB_XREF=gi:8499100 /DB_XREF=UI-R-BT1-ass-f-02-0-UI.s1 /CLONE=UI-R-BT1-ass-f-02-0-UI /FEA=EST /CNT=4 /TID=Rn.35304.1 /TIER=ConsEnd /STK=3 /UG=Rn.35304 /UG_TITLE=ESTs BE107015 RGD1563351 RGD1563351 294350 XM_001079990 /// XM_238200 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1378409_at AW533742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533742 /DB_XREF=gi:7176156 /DB_XREF=UI-R-BU0-anh-e-07-0-UI.s1 /CLONE=UI-R-BU0-anh-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.50548.1 /TIER=ConsEnd /STK=3 /UG=Rn.50548 /UG_TITLE=ESTs, Highly similar to S40959 transcription factor Brn-3A - rat (R.norvegicus) AW533742 POU class 4 homeobox 1 Pou4f1 114503 XM_001076964 /// XM_341372 0001967 // suckling behavior // inferred from electronic annotation /// 0001967 // suckling behavior // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007498 // mesoderm development // inferred from electronic annotation /// 0007498 // mesoderm development // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0021535 // cell migration in hindbrain // inferred from electronic annotation /// 0021535 // cell migration in hindbrain // not recorded /// 0021953 // central nervous system neuron differentiation // inferred from electronic annotation /// 0021953 // central nervous system neuron differentiation // not recorded /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // traceable author statement /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048934 // peripheral nervous system neuron differentiation // inferred from electronic annotation /// 0048934 // peripheral nervous system neuron differentiation // not recorded /// 0050767 // regulation of neurogenesis // inferred from electronic annotation /// 0050767 // regulation of neurogenesis // not recorded /// 0051355 // proprioception involved in equilibrioception // inferred from electronic annotation /// 0051355 // proprioception involved in equilibrioception // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1378410_at AW533455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533455 /DB_XREF=gi:7175869 /DB_XREF=UI-R-BU0-ani-b-03-0-UI.s1 /CLONE=UI-R-BU0-ani-b-03-0-UI /FEA=EST /CNT=4 /TID=Rn.48535.1 /TIER=ConsEnd /STK=3 /UG=Rn.48535 /UG_TITLE=ESTs AW533455 1378411_at AI231343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231343 /DB_XREF=gi:3815223 /DB_XREF=EST228031 /CLONE=REMDI82 /FEA=EST /CNT=4 /TID=Rn.37783.1 /TIER=ConsEnd /STK=3 /UG=Rn.37783 /UG_TITLE=ESTs AI231343 Chromodomain helicase DNA binding protein 7 Chd7 312974 NM_001107906 0001501 // skeletal system development // not recorded /// 0001568 // blood vessel development // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0007512 // adult heart development // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0007626 // locomotory behavior // not recorded /// 0007628 // adult walking behavior // not recorded /// 0008015 // blood circulation // not recorded /// 0021545 // cranial nerve development // not recorded /// 0030217 // T cell differentiation // not recorded /// 0030540 // female genitalia development // not recorded /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0042471 // ear morphogenesis // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0043010 // camera-type eye development // not recorded /// 0043584 // nose development // not recorded /// 0048806 // genitalia development // not recorded /// 0050890 // cognition // not recorded /// 0060021 // palate development // not recorded /// 0060041 // retina development in camera-type eye // not recorded /// 0060123 // regulation of growth hormone secretion // not recorded /// 0060173 // limb development // not recorded /// 0060324 // face development // not recorded 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1378412_at BE098862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098862 /DB_XREF=gi:8490733 /DB_XREF=UI-R-BJ1-ate-f-12-0-UI.s1 /CLONE=UI-R-BJ1-ate-f-12-0-UI /FEA=EST /CNT=4 /TID=Rn.40894.1 /TIER=ConsEnd /STK=3 /UG=Rn.40894 /UG_TITLE=ESTs BE098862 1378413_at BG379394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379394 /DB_XREF=gi:13303861 /DB_XREF=UI-R-CS0-btg-c-09-0-UI.s1 /CLONE=UI-R-CS0-btg-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.21983.1 /TIER=ConsEnd /STK=3 /UG=Rn.21983 /UG_TITLE=ESTs BG379394 1378414_at BI300992 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300992 /DB_XREF=gi:14977272 /DB_XREF=UI-R-DK0-cfk-f-05-0-UI.s2 /CLONE=UI-R-DK0-cfk-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.42061.1 /TIER=ConsEnd /STK=3 /UG=Rn.42061 /UG_TITLE=ESTs BI300992 1378415_at BM386879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386879 /DB_XREF=gi:18186932 /DB_XREF=UI-R-CN1-cjh-f-02-0-UI.s1 /CLONE=UI-R-CN1-cjh-f-02-0-UI /FEA=EST /CNT=4 /TID=Rn.34811.1 /TIER=ConsEnd /STK=3 /UG=Rn.34811 /UG_TITLE=ESTs BM386879 1378416_at AA892565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892565 /DB_XREF=gi:4132176 /DB_XREF=EST196368 /CLONE=RKIAS93 /FEA=EST /CNT=4 /TID=Rn.14768.1 /TIER=ConsEnd /STK=3 /UG=Rn.14768 /UG_TITLE=ESTs AA892565 tetratricopeptide repeat domain 8 Ttc8 299246 NM_001106752 0045444 // fat cell differentiation // not recorded 0032391 // photoreceptor connecting cilium // not recorded /// 0034464 // BBSome // not recorded 0005488 // binding // inferred from electronic annotation 1378417_at BI285847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285847 /DB_XREF=gi:14939905 /DB_XREF=UI-R-CX0s-ccv-e-11-0-UI.s1 /CLONE=UI-R-CX0s-ccv-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.42030.1 /TIER=ConsEnd /STK=3 /UG=Rn.42030 /UG_TITLE=ESTs BI285847 1378418_at BI285027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285027 /DB_XREF=gi:14938262 /DB_XREF=UI-R-DB0-byv-d-05-0-UI.s1 /CLONE=UI-R-DB0-byv-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.19387.1 /TIER=ConsEnd /STK=3 /UG=Rn.19387 /UG_TITLE=ESTs BI285027 TRAF-interacting protein with forkhead-associated domain, family member B Tifab 364674 NM_001025029 1378419_at AI177934 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177934 /DB_XREF=gi:3728572 /DB_XREF=EST221585 /CLONE=RPLCI79 /FEA=EST /CNT=4 /TID=Rn.29156.1 /TIER=ConsEnd /STK=3 /UG=Rn.29156 /UG_TITLE=ESTs, Moderately similar to ECP RAT EOSINOPHIL CATIONIC PROTEIN PRECURSOR (R.norvegicus) AI177934 ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin) Rnase2 474169 NM_001007015 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004522 // pancreatic ribonuclease activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1378420_at BF408177 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408177 /DB_XREF=gi:11396152 /DB_XREF=UI-R-BJ2-bra-f-04-0-UI.s1 /CLONE=UI-R-BJ2-bra-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.27227.1 /TIER=ConsEnd /STK=3 /UG=Rn.27227 /UG_TITLE=ESTs BF408177 1378421_at BG671734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671734 /DB_XREF=gi:13893833 /DB_XREF=DRNBXB04 /CLONE=DRNBXB04 /FEA=EST /CNT=4 /TID=Rn.15594.2 /TIER=ConsEnd /STK=3 /UG=Rn.15594 /UG_TITLE=ESTs BG671734 1378422_at BE117312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117312 /DB_XREF=gi:8509417 /DB_XREF=UI-R-BS1-ayn-c-09-0-UI.s1 /CLONE=UI-R-BS1-ayn-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.45384.1 /TIER=ConsEnd /STK=3 /UG=Rn.45384 /UG_TITLE=ESTs BE117312 1378423_at AI639060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639060 /DB_XREF=gi:4700094 /DB_XREF=rx04926s /CLONE=rx04926 /FEA=EST /CNT=4 /TID=Rn.35336.1 /TIER=ConsEnd /STK=3 /UG=Rn.35336 /UG_TITLE=ESTs AI639060 1378424_at BI288748 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288748 /DB_XREF=gi:14945630 /DB_XREF=UI-R-DK0-cde-e-02-0-UI.s1 /CLONE=UI-R-DK0-cde-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.34764.1 /TIER=ConsEnd /STK=3 /UG=Rn.34764 /UG_TITLE=ESTs BI288748 tripartite motif-containing 46 Trim46 310641 NM_001107691 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378425_at AI710552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI710552 /DB_XREF=gi:5000328 /DB_XREF=UI-R-AG1-aal-d-12-0-UI.s1 /CLONE=UI-R-AG1-aal-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.44776.1 /TIER=ConsEnd /STK=3 /UG=Rn.44776 /UG_TITLE=ESTs, Weakly similar to T20497 hypothetical protein F02D10.1 - Caenorhabditis elegans (C.elegans) AI710552 1378426_at AI228803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228803 /DB_XREF=gi:3812690 /DB_XREF=EST225498 /CLONE=RBRCZ72 /FEA=EST /CNT=4 /TID=Rn.41583.1 /TIER=ConsEnd /STK=3 /UG=Rn.41583 /UG_TITLE=ESTs AI228803 Similar to 2410024A21Rik protein RGD1304878 314415 XR_005460 /// XR_009633 1378427_at BF406639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406639 /DB_XREF=gi:11394614 /DB_XREF=UI-R-BJ2-bpv-d-09-0-UI.s1 /CLONE=UI-R-BJ2-bpv-d-09-0-UI /FEA=EST /CNT=4 /TID=Rn.23201.1 /TIER=ConsEnd /STK=3 /UG=Rn.23201 /UG_TITLE=ESTs, Highly similar to BMP6 MOUSE BONE MORPHOGENETIC PROTEIN 6 PRECURSOR (M.musculus) BF406639 Bone morphogenetic protein 6 Bmp6 25644 NM_013107 0001503 // ossification // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from expression pattern /// 0001649 // osteoblast differentiation // not recorded /// 0001654 // eye development // not recorded /// 0001822 // kidney development // not recorded /// 0001958 // endochondral ossification // not recorded /// 0006954 // inflammatory response // not recorded /// 0006955 // immune response // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from sequence or structural similarity /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // not recorded /// 0030509 // BMP signaling pathway // not recorded /// 0030539 // male genitalia development // not recorded /// 0032349 // positive regulation of aldosterone biosynthetic process // not recorded /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0040007 // growth // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // traceable author statement /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from mutant phenotype /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0051216 // cartilage development // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0060395 // SMAD protein signal transduction // not recorded /// 0060395 // SMAD protein signal transduction // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0031988 // membrane-bounded vesicle // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0070700 // BMP receptor binding // not recorded 1378428_at AI233552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233552 /DB_XREF=gi:3817432 /DB_XREF=EST230240 /CLONE=RKIDH02 /FEA=EST /CNT=4 /TID=Rn.23777.1 /TIER=ConsEnd /STK=3 /UG=Rn.23777 /UG_TITLE=ESTs AI233552 1378429_at BE108925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108925 /DB_XREF=gi:8501030 /DB_XREF=UI-R-BS1-aza-a-03-0-UI.s1 /CLONE=UI-R-BS1-aza-a-03-0-UI /FEA=EST /CNT=4 /TID=Rn.13318.1 /TIER=ConsEnd /STK=3 /UG=Rn.13318 /UG_TITLE=ESTs BE108925 1378430_at AI555053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555053 /DB_XREF=gi:4487416 /DB_XREF=UI-R-C2p-qv-h-04-0-UI.s1 /CLONE=UI-R-C2p-qv-h-04-0-UI /FEA=EST /CNT=4 /TID=Rn.26552.1 /TIER=ConsEnd /STK=3 /UG=Rn.26552 /UG_TITLE=ESTs AI555053 monooxygenase, DBH-like 1 Moxd1 294119 XM_001054130 /// XM_220095 0006584 // catecholamine metabolic process // inferred from electronic annotation /// 0009987 // cellular process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004500 // dopamine beta-monooxygenase activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from electronic annotation 1378431_at BE095772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095772 /DB_XREF=gi:8486703 /DB_XREF=UI-R-BU0-aoz-c-03-0-UI.s1 /CLONE=UI-R-BU0-aoz-c-03-0-UI /FEA=EST /CNT=4 /TID=Rn.26650.1 /TIER=ConsEnd /STK=3 /UG=Rn.26650 /UG_TITLE=ESTs, Highly similar to JC5929 serinearginine-rich protein-specific kinase (M.musculus) BE095772 SFRS protein kinase 2 Srpk2 296753 NM_001106575 0000245 // spliceosome assembly // inferred from electronic annotation /// 0000245 // spliceosome assembly // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1378432_at BF404641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404641 /DB_XREF=gi:11392616 /DB_XREF=UI-R-CA1-bih-h-08-0-UI.s1 /CLONE=UI-R-CA1-bih-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.58303.1 /TIER=ConsEnd /STK=3 /UG=Rn.58303 /UG_TITLE=ESTs BF404641 1378433_at BI296242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296242 /DB_XREF=gi:14960487 /DB_XREF=UI-R-DK0-cey-a-07-0-UI.s1 /CLONE=UI-R-DK0-cey-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.60642.1 /TIER=ConsEnd /STK=3 /UG=Rn.60642 /UG_TITLE=ESTs BI296242 ankyrin repeat domain 33B Ankrd33b 310200 NM_001191565 /// XM_001065785 /// XM_002725922 /// XM_002729017 /// XM_226907 1378434_at BF400808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400808 /DB_XREF=gi:11388823 /DB_XREF=UI-R-CA0-bhg-e-04-0-UI.s1 /CLONE=UI-R-CA0-bhg-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.26737.1 /TIER=ConsEnd /STK=3 /UG=Rn.26737 /UG_TITLE=ESTs BF400808 1378435_at BI284247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284247 /DB_XREF=gi:14936756 /DB_XREF=UI-R-CX0s-ccn-h-07-0-UI.s1 /CLONE=UI-R-CX0s-ccn-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.25333.1 /TIER=ConsEnd /STK=3 /UG=Rn.25333 /UG_TITLE=ESTs BI284247 ADP-ribosyltransferase 4 Art4 312806 NM_001173509 /// XM_001072607 /// XM_232495 0006471 // protein ADP-ribosylation // inferred from electronic annotation 0003956 // NAD(P)+-protein-arginine ADP-ribosyltransferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1378436_at BM384580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384580 /DB_XREF=gi:18184633 /DB_XREF=UI-R-DY0-ckl-g-03-0-UI.s1 /CLONE=UI-R-DY0-ckl-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.56737.1 /TIER=ConsEnd /STK=3 /UG=Rn.56737 /UG_TITLE=ESTs, Weakly similar to T50616 hypothetical protein DKFZp761G0415.1 (H.sapiens) BM384580 Bxdc5 protein-like LOC100364311 100364311 XR_085714 1378437_at BM385012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385012 /DB_XREF=gi:18185065 /DB_XREF=UI-R-CN1-cjm-i-22-0-UI.s2 /CLONE=UI-R-CN1-cjm-i-22-0-UI /FEA=EST /CNT=3 /TID=Rn.74821.1 /TIER=ConsEnd /STK=3 /UG=Rn.74821 /UG_TITLE=ESTs BM385012 1378438_at BF405026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405026 /DB_XREF=gi:11393001 /DB_XREF=UI-R-CA1-bio-f-08-0-UI.s1 /CLONE=UI-R-CA1-bio-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.58207.1 /TIER=ConsEnd /STK=3 /UG=Rn.58207 /UG_TITLE=ESTs BF405026 1378439_at AI175531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175531 /DB_XREF=gi:3726169 /DB_XREF=EST219085 /CLONE=RMUCO65 /FEA=EST /CNT=3 /TID=Rn.28907.1 /TIER=ConsEnd /STK=3 /UG=Rn.28907 /UG_TITLE=ESTs AI175531 1378440_at BM385137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385137 /DB_XREF=gi:18185190 /DB_XREF=UI-R-CN1-cjm-h-02-0-UI.s2 /CLONE=UI-R-CN1-cjm-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.40654.1 /TIER=ConsEnd /STK=3 /UG=Rn.40654 /UG_TITLE=ESTs BM385137 1378441_at AI176859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176859 /DB_XREF=gi:3727497 /DB_XREF=EST220462 /CLONE=ROVBX77 /FEA=EST /CNT=3 /TID=Rn.29040.1 /TIER=ConsEnd /STK=3 /UG=Rn.29040 /UG_TITLE=ESTs AI176859 1378442_at BF400763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400763 /DB_XREF=gi:11388738 /DB_XREF=UI-R-CA0-bhf-c-11-0-UI.s1 /CLONE=UI-R-CA0-bhf-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.58780.1 /TIER=ConsEnd /STK=3 /UG=Rn.58780 /UG_TITLE=ESTs BF400763 1378443_at BI295964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295964 /DB_XREF=gi:14959936 /DB_XREF=UI-R-DK0-cfc-g-11-0-UI.s1 /CLONE=UI-R-DK0-cfc-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.43136.1 /TIER=ConsEnd /STK=3 /UG=Rn.43136 /UG_TITLE=ESTs, Weakly similar to CD48 RAT MRC OX-45 SURFACE ANTIGEN PRECURSOR (R.norvegicus) BI295964 SLAM family member 9 Slamf9 289235 NM_001105971 1378444_at AI175473 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175473 /DB_XREF=gi:3726111 /DB_XREF=EST219023 /CLONE=RMUCN89 /FEA=EST /CNT=3 /TID=Rn.28903.1 /TIER=ConsEnd /STK=3 /UG=Rn.28903 /UG_TITLE=ESTs AI175473 1378445_at BM388759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388759 /DB_XREF=gi:18188812 /DB_XREF=UI-R-DZ0-ckn-c-11-0-UI.s1 /CLONE=UI-R-DZ0-ckn-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.12539.1 /TIER=ConsEnd /STK=3 /UG=Rn.12539 /UG_TITLE=ESTs BM388759 1378446_at BI283723 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283723 /DB_XREF=gi:14935747 /DB_XREF=UI-R-CW0s-cch-a-03-0-UI.s1 /CLONE=UI-R-CW0s-cch-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.30620.1 /TIER=ConsEnd /STK=3 /UG=Rn.30620 /UG_TITLE=ESTs BI283723 1378447_at AA849989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849989 /DB_XREF=gi:2937529 /DB_XREF=EST192756 /CLONE=RMUAL45 /FEA=EST /CNT=3 /TID=Rn.32342.1 /TIER=ConsEnd /STK=3 /UG=Rn.32342 /UG_TITLE=ESTs AA849989 1378448_at BI295914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295914 /DB_XREF=gi:14959836 /DB_XREF=UI-R-DK0-cfc-c-02-0-UI.s1 /CLONE=UI-R-DK0-cfc-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.66957.1 /TIER=ConsEnd /STK=3 /UG=Rn.66957 /UG_TITLE=ESTs BI295914 integrin beta 1 binding protein 1 Itgb1bp1 298914 NM_001106719 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0001726 // ruffle // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378449_at BM384990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384990 /DB_XREF=gi:18185043 /DB_XREF=UI-R-CN1-cjm-c-04-0-UI.s2 /CLONE=UI-R-CN1-cjm-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.77803.1 /TIER=ConsEnd /STK=3 /UG=Rn.77803 /UG_TITLE=ESTs BM384990 keratinocyte proline-rich protein Kprp 432393 NM_001002290 0005737 // cytoplasm // inferred from electronic annotation 1378450_at BF400764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400764 /DB_XREF=gi:11388739 /DB_XREF=UI-R-CA0-bhf-c-12-0-UI.s1 /CLONE=UI-R-CA0-bhf-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.59638.1 /TIER=ConsEnd /STK=3 /UG=Rn.59638 /UG_TITLE=ESTs BF400764 1378451_at AI411767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411767 /DB_XREF=gi:4255271 /DB_XREF=EST240061 /CLONE=RPLDJ66 /FEA=EST /CNT=3 /TID=Rn.24160.1 /TIER=ConsEnd /STK=3 /UG=Rn.24160 /UG_TITLE=ESTs AI411767 cytochrome b-245, alpha polypeptide Cyba 79129 NM_024160 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0003106 // regulation of glomerular filtration by angiotensin // inferred from mutant phenotype /// 0006800 // oxygen and reactive oxygen species metabolic process // traceable author statement /// 0006801 // superoxide metabolic process // inferred from direct assay /// 0006801 // superoxide metabolic process // inferred from mutant phenotype /// 0006801 // superoxide metabolic process // not recorded /// 0006801 // superoxide metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0008217 // regulation of blood pressure // inferred from mutant phenotype /// 0014895 // smooth muscle hypertrophy // inferred from mutant phenotype /// 0017004 // cytochrome complex assembly // inferred from electronic annotation /// 0017004 // cytochrome complex assembly // not recorded /// 0022900 // electron transport chain // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0042554 // superoxide anion generation // inferred from mutant phenotype /// 0042554 // superoxide anion generation // not recorded /// 0042554 // superoxide anion generation // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation /// 0045087 // innate immune response // not recorded /// 0045730 // respiratory burst // inferred from electronic annotation /// 0045730 // respiratory burst // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0050665 // hydrogen peroxide biosynthetic process // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from mutant phenotype /// 0055114 // oxidation reduction // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0070555 // response to interleukin-1 // inferred from expression pattern /// 0071230 // cellular response to amino acid stimulus // inferred from expression pattern /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern /// 0071310 // cellular response to organic substance // inferred from direct assay /// 0071333 // cellular response to glucose stimulus // inferred from expression pattern /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern /// 0071407 // cellular response to organic cyclic substance // inferred from expression pattern /// 0071480 // cellular response to gamma radiation // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043020 // NADPH oxidase complex // inferred from direct assay /// 0043020 // NADPH oxidase complex // inferred from mutant phenotype /// 0043020 // NADPH oxidase complex // not recorded /// 0043020 // NADPH oxidase complex // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0009055 // electron carrier activity // not recorded /// 0016175 // superoxide-generating NADPH oxidase activity // inferred from mutant phenotype /// 0016175 // superoxide-generating NADPH oxidase activity // not recorded /// 0016175 // superoxide-generating NADPH oxidase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1378452_at BF404987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404987 /DB_XREF=gi:11392962 /DB_XREF=UI-R-CA1-bio-b-02-0-UI.s1 /CLONE=UI-R-CA1-bio-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.57253.1 /TIER=ConsEnd /STK=3 /UG=Rn.57253 /UG_TITLE=ESTs BF404987 protease, serine, 36 Prss36 497040 NM_001011560 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1378453_at BM389035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389035 /DB_XREF=gi:18189088 /DB_XREF=UI-R-DZ0-cko-d-15-0-UI.s1 /CLONE=UI-R-DZ0-cko-d-15-0-UI /FEA=EST /CNT=3 /TID=Rn.66186.1 /TIER=ConsEnd /STK=3 /UG=Rn.66186 /UG_TITLE=ESTs BM389035 1378454_at BF405939 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405939 /DB_XREF=gi:11393914 /DB_XREF=UI-R-CA1-bii-g-08-0-UI.s1 /CLONE=UI-R-CA1-bii-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.63306.1 /TIER=ConsEnd /STK=3 /UG=Rn.63306 /UG_TITLE=ESTs BF405939 1378455_at BE109654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109654 /DB_XREF=gi:8501759 /DB_XREF=UI-R-BJ1-avq-f-05-0-UI.s1 /CLONE=UI-R-BJ1-avq-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.16150.1 /TIER=ConsEnd /STK=3 /UG=Rn.16150 /UG_TITLE=ESTs, Highly similar to JC4978 oxidative stress protein A170 - mouse (M.musculus) BE109654 1378456_at AI411921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411921 /DB_XREF=gi:4255425 /DB_XREF=EST240215 /CLONE=RKIER55 /FEA=EST /CNT=3 /TID=Rn.43543.1 /TIER=ConsEnd /STK=3 /UG=Rn.43543 /UG_TITLE=ESTs AI411921 1378457_at AI179450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179450 /DB_XREF=gi:3730088 /DB_XREF=EST223162 /CLONE=RSPCH52 /FEA=EST /CNT=3 /TID=Rn.34019.1 /TIER=ConsEnd /STK=3 /UG=Rn.34019 /UG_TITLE=ESTs AI179450 1378458_at BI281745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281745 /DB_XREF=gi:14931806 /DB_XREF=UI-R-CU0s-cbs-a-06-0-UI.s1 /CLONE=UI-R-CU0s-cbs-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.49622.1 /TIER=ConsEnd /STK=3 /UG=Rn.49622 /UG_TITLE=ESTs BI281745 1378459_at BE113008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113008 /DB_XREF=gi:8505113 /DB_XREF=UI-R-BJ1-awf-d-01-0-UI.s1 /CLONE=UI-R-BJ1-awf-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.50364.1 /TIER=ConsEnd /STK=3 /UG=Rn.50364 /UG_TITLE=ESTs BE113008 1378460_at BG376867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376867 /DB_XREF=gi:13301339 /DB_XREF=UI-R-CA1-bli-b-10-0-UI.s1 /CLONE=UI-R-CA1-bli-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.52194.1 /TIER=ConsEnd /STK=3 /UG=Rn.52194 /UG_TITLE=ESTs BG376867 1378461_at BG376813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376813 /DB_XREF=gi:13301285 /DB_XREF=UI-R-CA1-blh-d-09-0-UI.s1 /CLONE=UI-R-CA1-blh-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.66430.1 /TIER=ConsEnd /STK=3 /UG=Rn.66430 /UG_TITLE=ESTs BG376813 1378462_at BE107396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107396 /DB_XREF=gi:8499501 /DB_XREF=UI-R-BS1-ayt-c-03-0-UI.s1 /CLONE=UI-R-BS1-ayt-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.36309.1 /TIER=ConsEnd /STK=3 /UG=Rn.36309 /UG_TITLE=ESTs BE107396 1378463_at BF405047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405047 /DB_XREF=gi:11393022 /DB_XREF=UI-R-CA1-bip-a-03-0-UI.s1 /CLONE=UI-R-CA1-bip-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.61501.1 /TIER=ConsEnd /STK=3 /UG=Rn.61501 /UG_TITLE=ESTs BF405047 1378464_at BM385973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385973 /DB_XREF=gi:18186026 /DB_XREF=UI-R-DN1-ckg-i-20-0-UI.s1 /CLONE=UI-R-DN1-ckg-i-20-0-UI /FEA=EST /CNT=3 /TID=Rn.81575.1 /TIER=ConsEnd /STK=3 /UG=Rn.81575 /UG_TITLE=ESTs BM385973 1378465_at BF405167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405167 /DB_XREF=gi:11393142 /DB_XREF=UI-R-CA1-biq-f-03-0-UI.s1 /CLONE=UI-R-CA1-biq-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.60685.1 /TIER=ConsEnd /STK=3 /UG=Rn.60685 /UG_TITLE=ESTs BF405167 1378466_at BF400803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400803 /DB_XREF=gi:11388818 /DB_XREF=UI-R-CA0-bhg-d-08-0-UI.s1 /CLONE=UI-R-CA0-bhg-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.60172.1 /TIER=ConsEnd /STK=3 /UG=Rn.60172 /UG_TITLE=ESTs BF400803 1378467_at AA851361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851361 /DB_XREF=gi:2938901 /DB_XREF=EST194129 /CLONE=RPLAF69 /FEA=EST /CNT=3 /TID=Rn.6735.1 /TIER=ConsEnd /STK=3 /UG=Rn.6735 /UG_TITLE=ESTs AA851361 1378468_at BM390127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390127 /DB_XREF=gi:18190180 /DB_XREF=UI-R-CN1-cjp-f-20-0-UI.s1 /CLONE=UI-R-CN1-cjp-f-20-0-UI /FEA=EST /CNT=3 /TID=Rn.19412.1 /TIER=ConsEnd /STK=3 /UG=Rn.19412 /UG_TITLE=ESTs, Weakly similar to T15563 hypothetical protein C18F10.7 - Caenorhabditis elegans (C.elegans) BM390127 ankyrin repeat domain 13B Ankrd13b 360575 XM_001080794 /// XM_340854 1378469_at BF406194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406194 /DB_XREF=gi:11394169 /DB_XREF=UI-R-CA1-bjf-a-12-0-UI.s1 /CLONE=UI-R-CA1-bjf-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.61870.1 /TIER=ConsEnd /STK=3 /UG=Rn.61870 /UG_TITLE=ESTs BF406194 1378470_at BM384409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384409 /DB_XREF=gi:18184462 /DB_XREF=UI-R-CN1-cjn-g-08-0-UI.s1 /CLONE=UI-R-CN1-cjn-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.18098.1 /TIER=ConsEnd /STK=3 /UG=Rn.18098 /UG_TITLE=ESTs BM384409 progestin and adipoQ receptor family member V Paqr5 315741 NM_001014092 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1378471_at BE111819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111819 /DB_XREF=gi:8503924 /DB_XREF=UI-R-BJ1-avz-b-06-0-UI.s1 /CLONE=UI-R-BJ1-avz-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.11669.1 /TIER=ConsEnd /STK=3 /UG=Rn.11669 /UG_TITLE=ESTs, Moderately similar to T50631 hypothetical protein DKFZp762D1011.1 (H.sapiens) BE111819 ribonucleoprotein, PTB-binding 2 Raver2 362551 NM_001191867 /// XM_001061591 /// XM_342871 0005634 // nucleus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378472_at BE108158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108158 /DB_XREF=gi:8500303 /DB_XREF=UI-R-BS1-ayw-e-08-0-UI.s1 /CLONE=UI-R-BS1-ayw-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.20751.1 /TIER=ConsEnd /STK=3 /UG=Rn.20751 /UG_TITLE=ESTs BE108158 1378473_at BE107166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107166 /DB_XREF=gi:8499271 /DB_XREF=UI-R-BS1-ayq-f-02-0-UI.s1 /CLONE=UI-R-BS1-ayq-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.45001.1 /TIER=ConsEnd /STK=3 /UG=Rn.45001 /UG_TITLE=ESTs BE107166 1378474_at BF400707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400707 /DB_XREF=gi:11388682 /DB_XREF=UI-R-CA0-bhe-e-10-0-UI.s1 /CLONE=UI-R-CA0-bhe-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.52203.1 /TIER=ConsEnd /STK=3 /UG=Rn.52203 /UG_TITLE=ESTs BF400707 1378475_at BF396428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396428 /DB_XREF=gi:11381400 /DB_XREF=UI-R-BS2-bdy-a-08-0-UI.s1 /CLONE=UI-R-BS2-bdy-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.11907.1 /TIER=ConsEnd /STK=3 /UG=Rn.11907 /UG_TITLE=ESTs BF396428 amyloid beta precursor protein (cytoplasmic tail) binding protein 2 Appbp2 303396 NM_001100969 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0046907 // intracellular transport // inferred from electronic annotation /// 0046907 // intracellular transport // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378476_at BM390047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390047 /DB_XREF=gi:18190100 /DB_XREF=UI-R-CN1-cjo-f-13-0-UI.s1 /CLONE=UI-R-CN1-cjo-f-13-0-UI /FEA=EST /CNT=3 /TID=Rn.61125.1 /TIER=ConsEnd /STK=3 /UG=Rn.61125 /UG_TITLE=ESTs BM390047 alanyl-tRNA synthetase 2, mitochondrial (putative) Aars2 301254 NM_001106891 0006412 // translation // inferred from electronic annotation /// 0006419 // alanyl-tRNA aminoacylation // inferred from electronic annotation /// 0043039 // tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004813 // alanine-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016876 // ligase activity, forming aminoacyl-tRNA and related compounds // inferred from electronic annotation 1378477_a_at BI281796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281796 /DB_XREF=gi:14931907 /DB_XREF=UI-R-CU0s-cbs-f-06-0-UI.s1 /CLONE=UI-R-CU0s-cbs-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.77430.1 /TIER=ConsEnd /STK=3 /UG=Rn.77430 /UG_TITLE=ESTs, Moderately similar to FHOS_HUMAN FH1FH2 domains-containing protein (Formin homolog overexpressed in spleen) (FHOS) (H.sapiens) BI281796 formin homology 2 domain containing 1 Fhod1 291964 NM_001191600 /// XM_001072430 /// XM_214682 0016043 // cellular component organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378478_at BF406342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406342 /DB_XREF=gi:11394317 /DB_XREF=UI-R-CA1-bjf-n-19-0-UI.s1 /CLONE=UI-R-CA1-bjf-n-19-0-UI /FEA=EST /CNT=3 /TID=Rn.34995.1 /TIER=ConsEnd /STK=3 /UG=Rn.34995 /UG_TITLE=ESTs BF406342 SH3 and cysteine rich domain 2 Stac2 363674 NM_001108834 0023034 // intracellular signaling pathway // inferred from electronic annotation 0046872 // metal ion binding // inferred from electronic annotation 1378479_at BI285912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285912 /DB_XREF=gi:14940036 /DB_XREF=UI-R-CX0s-ccp-c-08-0-UI.s1 /CLONE=UI-R-CX0s-ccp-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.12309.1 /TIER=ConsEnd /STK=3 /UG=Rn.12309 /UG_TITLE=ESTs, Highly similar to CLN3 MOUSE CLN3 PROTEIN (M.musculus) BI285912 ceroid-lipofuscinosis, neuronal 3 Cln3 293485 NM_001006971 0000046 // autophagic vacuole fusion // inferred from electronic annotation /// 0000046 // autophagic vacuole fusion // not recorded /// 0001508 // regulation of action potential // inferred from electronic annotation /// 0001508 // regulation of action potential // not recorded /// 0001575 // globoside metabolic process // not recorded /// 0001575 // globoside metabolic process // inferred from sequence or structural similarity /// 0001575 // globoside metabolic process // inferred from electronic annotation /// 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006520 // cellular amino acid metabolic process // not recorded /// 0006672 // ceramide metabolic process // not recorded /// 0006672 // ceramide metabolic process // inferred from sequence or structural similarity /// 0006672 // ceramide metabolic process // inferred from electronic annotation /// 0006678 // glucosylceramide metabolic process // not recorded /// 0006678 // glucosylceramide metabolic process // inferred from sequence or structural similarity /// 0006678 // glucosylceramide metabolic process // inferred from electronic annotation /// 0006681 // galactosylceramide metabolic process // not recorded /// 0006681 // galactosylceramide metabolic process // inferred from sequence or structural similarity /// 0006681 // galactosylceramide metabolic process // inferred from electronic annotation /// 0006684 // sphingomyelin metabolic process // not recorded /// 0006684 // sphingomyelin metabolic process // inferred from sequence or structural similarity /// 0006684 // sphingomyelin metabolic process // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded /// 0006898 // receptor-mediated endocytosis // not recorded /// 0006898 // receptor-mediated endocytosis // inferred from sequence or structural similarity /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0007040 // lysosome organization // not recorded /// 0007040 // lysosome organization // inferred from electronic annotation /// 0007042 // lysosomal lumen acidification // not recorded /// 0007042 // lysosomal lumen acidification // inferred from sequence or structural similarity /// 0007042 // lysosomal lumen acidification // inferred from electronic annotation /// 0008306 // associative learning // inferred from electronic annotation /// 0008306 // associative learning // not recorded /// 0015809 // arginine transport // not recorded /// 0015809 // arginine transport // inferred from sequence or structural similarity /// 0015809 // arginine transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016236 // macroautophagy // not recorded /// 0016236 // macroautophagy // inferred from electronic annotation /// 0016242 // negative regulation of macroautophagy // inferred from electronic annotation /// 0016242 // negative regulation of macroautophagy // not recorded /// 0016485 // protein processing // inferred from electronic annotation /// 0016485 // protein processing // not recorded /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from electronic annotation /// 0035235 // ionotropic glutamate receptor signaling pathway // not recorded /// 0042133 // neurotransmitter metabolic process // inferred from electronic annotation /// 0042133 // neurotransmitter metabolic process // not recorded /// 0042987 // amyloid precursor protein catabolic process // not recorded /// 0042987 // amyloid precursor protein catabolic process // inferred from sequence or structural similarity /// 0042987 // amyloid precursor protein catabolic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045861 // negative regulation of proteolysis // inferred from electronic annotation /// 0045861 // negative regulation of proteolysis // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0051453 // regulation of intracellular pH // not recorded /// 0051453 // regulation of intracellular pH // inferred from sequence or structural similarity /// 0051453 // regulation of intracellular pH // inferred from electronic annotation /// 0051480 // cytosolic calcium ion homeostasis // inferred from electronic annotation /// 0051480 // cytosolic calcium ion homeostasis // not recorded 0000139 // Golgi membrane // not recorded /// 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from sequence or structural similarity /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from sequence or structural similarity /// 0005764 // lysosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from sequence or structural similarity /// 0005769 // early endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005776 // autophagic vacuole // inferred from electronic annotation /// 0005776 // autophagic vacuole // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // not recorded /// 0005795 // Golgi stack // inferred from sequence or structural similarity /// 0005795 // Golgi stack // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005802 // trans-Golgi network // inferred from sequence or structural similarity /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0005901 // caveola // inferred from sequence or structural similarity /// 0005901 // caveola // inferred from electronic annotation /// 0008021 // synaptic vesicle // not recorded /// 0008021 // synaptic vesicle // inferred from sequence or structural similarity /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded /// 0030176 // integral to endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0043005 // neuron projection // inferred from sequence or structural similarity /// 0043005 // neuron projection // inferred from electronic annotation /// 0044433 // cytoplasmic vesicle part // inferred from electronic annotation /// 0044433 // cytoplasmic vesicle part // not recorded /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from sequence or structural similarity /// 0045121 // membrane raft // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded 1378480_at BI282157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282157 /DB_XREF=gi:14932625 /DB_XREF=UI-R-CU0s-cbx-c-07-0-UI.s1 /CLONE=UI-R-CU0s-cbx-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.27552.1 /TIER=ConsEnd /STK=3 /UG=Rn.27552 /UG_TITLE=ESTs BI282157 1378481_at BG378577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378577 /DB_XREF=gi:13303049 /DB_XREF=UI-R-CV1-bvr-b-04-0-UI.s1 /CLONE=UI-R-CV1-bvr-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.66578.1 /TIER=ConsEnd /STK=3 /UG=Rn.66578 /UG_TITLE=ESTs, Weakly similar to NED4 MOUSE NEDD-4 PROTEIN (M.musculus) BG378577 1378482_at AI411065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411065 /DB_XREF=gi:4254569 /DB_XREF=EST239359 /CLONE=RKIEP62 /FEA=EST /CNT=3 /TID=Rn.16336.1 /TIER=ConsEnd /STK=3 /UG=Rn.16336 /UG_TITLE=ESTs AI411065 MyoD family inhibitor domain containing Mdfic 362325 NM_001105668 0007257 // activation of JUN kinase activity // not recorded /// 0030111 // regulation of Wnt receptor signaling pathway // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0050434 // positive regulation of viral transcription // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0030332 // cyclin binding // not recorded /// 0030957 // Tat protein binding // not recorded 1378483_at BI274659 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274659 /DB_XREF=gi:14885775 /DB_XREF=UI-R-CX0-bws-e-04-0-UI.s1 /CLONE=UI-R-CX0-bws-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.79989.1 /TIER=ConsEnd /STK=3 /UG=Rn.79989 /UG_TITLE=ESTs, Weakly similar to PRL RAT PROLACTIN PRECURSOR (R.norvegicus) BI274659 prolactin family 7, subfamily b, member 1 Prl7b1 266804 NM_153738 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation 1378484_at BI279720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279720 /DB_XREF=gi:14927804 /DB_XREF=UI-R-DE0-caf-h-07-0-UI.s1 /CLONE=UI-R-DE0-caf-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.46094.1 /TIER=ConsEnd /STK=3 /UG=Rn.46094 /UG_TITLE=ESTs BI279720 RAS-like, family 12 Rasl12 315762 NM_001108162 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1378485_at BF405179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405179 /DB_XREF=gi:11393159 /DB_XREF=UI-R-CA1-biq-g-12-0-UI.s1 /CLONE=UI-R-CA1-biq-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.49915.1 /TIER=ConsEnd /STK=3 /UG=Rn.49915 /UG_TITLE=ESTs BF405179 1378486_at BF409825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409825 /DB_XREF=gi:11397800 /DB_XREF=UI-R-CA1-bjr-c-04-0-UI.s1 /CLONE=UI-R-CA1-bjr-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.62779.1 /TIER=ConsEnd /STK=3 /UG=Rn.62779 /UG_TITLE=ESTs BF409825 1378487_at BF403191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403191 /DB_XREF=gi:11391166 /DB_XREF=UI-R-CA0-bhs-g-04-0-UI.s1 /CLONE=UI-R-CA0-bhs-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.60218.1 /TIER=ConsEnd /STK=3 /UG=Rn.60218 /UG_TITLE=ESTs BF403191 1378488_at BG378199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378199 /DB_XREF=gi:13302671 /DB_XREF=UI-R-CV1-bvp-b-09-0-UI.s1 /CLONE=UI-R-CV1-bvp-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.66551.1 /TIER=ConsEnd /STK=3 /UG=Rn.66551 /UG_TITLE=ESTs BG378199 1378489_at BF390687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390687 /DB_XREF=gi:11375534 /DB_XREF=UI-R-CA1-bco-b-06-0-UI.s1 /CLONE=UI-R-CA1-bco-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.57236.1 /TIER=ConsEnd /STK=3 /UG=Rn.57236 /UG_TITLE=ESTs BF390687 1378490_at BE110558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110558 /DB_XREF=gi:8502663 /DB_XREF=UI-R-BJ1-avt-d-07-0-UI.s1 /CLONE=UI-R-BJ1-avt-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.51910.1 /TIER=ConsEnd /STK=3 /UG=Rn.51910 /UG_TITLE=ESTs BE110558 1378491_at BF394202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394202 /DB_XREF=gi:11379066 /DB_XREF=UI-R-CA0-bhb-g-03-0-UI.s1 /CLONE=UI-R-CA0-bhb-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.57227.1 /TIER=ConsEnd /STK=3 /UG=Rn.57227 /UG_TITLE=ESTs BF394202 1378492_at BF396209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396209 /DB_XREF=gi:11381146 /DB_XREF=UI-R-BS2-bdv-b-07-0-UI.s1 /CLONE=UI-R-BS2-bdv-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.47591.1 /TIER=ConsEnd /STK=3 /UG=Rn.47591 /UG_TITLE=ESTs BF396209 1378493_at BE117901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117901 /DB_XREF=gi:8510006 /DB_XREF=UI-R-BS1-azm-c-11-0-UI.s1 /CLONE=UI-R-BS1-azm-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.50550.1 /TIER=ConsEnd /STK=3 /UG=Rn.50550 /UG_TITLE=ESTs BE117901 1378494_at BF394109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394109 /DB_XREF=gi:11378973 /DB_XREF=UI-R-CA0-bgz-d-08-0-UI.s1 /CLONE=UI-R-CA0-bgz-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.62821.1 /TIER=ConsEnd /STK=3 /UG=Rn.62821 /UG_TITLE=ESTs, Weakly similar to A45910 ultra-high-sulfur keratin - mouse (M.musculus) BF394109 1378495_at BF414427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414427 /DB_XREF=gi:11402411 /DB_XREF=UI-R-CA0-bpa-c-05-0-UI.s1 /CLONE=UI-R-CA0-bpa-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.62533.1 /TIER=ConsEnd /STK=3 /UG=Rn.62533 /UG_TITLE=ESTs BF414427 1378496_at BM384963 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384963 /DB_XREF=gi:18185016 /DB_XREF=UI-R-CN1-cjl-n-02-0-UI.s2 /CLONE=UI-R-CN1-cjl-n-02-0-UI /FEA=EST /CNT=3 /TID=Rn.78549.1 /TIER=ConsEnd /STK=3 /UG=Rn.78549 /UG_TITLE=ESTs BM384963 1378497_at BF400776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400776 /DB_XREF=gi:11388746 /DB_XREF=UI-R-CA0-bhf-d-08-0-UI.s1 /CLONE=UI-R-CA0-bhf-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.13194.1 /TIER=ConsEnd /STK=3 /UG=Rn.13194 /UG_TITLE=ESTs BF400776 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 LOC100362764 100362764 XM_002724816 /// XM_002727964 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1378498_at BF394165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394165 /DB_XREF=gi:11379029 /DB_XREF=UI-R-CA0-bha-g-08-0-UI.s1 /CLONE=UI-R-CA0-bha-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.57393.1 /TIER=ConsEnd /STK=3 /UG=Rn.57393 /UG_TITLE=ESTs BF394165 1378499_at BF405148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405148 /DB_XREF=gi:11393123 /DB_XREF=UI-R-CA1-biq-c-10-0-UI.s1 /CLONE=UI-R-CA1-biq-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.58019.1 /TIER=ConsEnd /STK=3 /UG=Rn.58019 /UG_TITLE=ESTs BF405148 1378500_at BF390629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390629 /DB_XREF=gi:11375476 /DB_XREF=UI-R-CA1-bck-d-05-0-UI.s1 /CLONE=UI-R-CA1-bck-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.20996.1 /TIER=ConsEnd /STK=3 /UG=Rn.20996 /UG_TITLE=ESTs BF390629 1378501_at BE113386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113386 /DB_XREF=gi:8505491 /DB_XREF=UI-R-BJ1-awe-g-05-0-UI.s1 /CLONE=UI-R-BJ1-awe-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.49149.1 /TIER=ConsEnd /STK=3 /UG=Rn.49149 /UG_TITLE=ESTs, Moderately similar to T17345 hypothetical protein DKFZp586M1824.1 (H.sapiens) BE113386 similar to gem (nuclear organelle) associated protein 5 LOC691231 691231 NM_001172089 /// XM_002724496 /// XM_002727742 1378502_at BG381643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381643 /DB_XREF=gi:13306115 /DB_XREF=UI-R-CT0-bud-f-12-0-UI.s1 /CLONE=UI-R-CT0-bud-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.62153.1 /TIER=ConsEnd /STK=3 /UG=Rn.62153 /UG_TITLE=ESTs BG381643 1378503_at BF404403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404403 /DB_XREF=gi:11392378 /DB_XREF=UI-R-CA1-bie-h-01-0-UI.s1 /CLONE=UI-R-CA1-bie-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.62645.1 /TIER=ConsEnd /STK=3 /UG=Rn.62645 /UG_TITLE=ESTs BF404403 hypothetical LOC100125371 LOC100125371 100125371 1378504_at AW251647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251647 /DB_XREF=gi:6595238 /DB_XREF=UI-R-BJ0-adp-c-01-0-UI.s1 /CLONE=UI-R-BJ0-adp-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.25124.1 /TIER=ConsEnd /STK=3 /UG=Rn.25124 /UG_TITLE=ESTs AW251647 1378505_at AI232255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232255 /DB_XREF=gi:3816135 /DB_XREF=EST228943 /CLONE=RKIBZ23 /FEA=EST /CNT=3 /TID=Rn.40274.1 /TIER=ConsEnd /STK=3 /UG=Rn.40274 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) AI232255 1378506_at BM385647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385647 /DB_XREF=gi:18185700 /DB_XREF=UI-R-DM1-ckd-l-20-0-UI.s1 /CLONE=UI-R-DM1-ckd-l-20-0-UI /FEA=EST /CNT=3 /TID=Rn.15573.1 /TIER=ConsEnd /STK=3 /UG=Rn.15573 /UG_TITLE=ESTs BM385647 phosphoinositide-3-kinase, class 2, alpha polypeptide Pik3c2a 361632 NM_001108500 0007154 // cell communication // inferred from electronic annotation /// 0046854 // phosphoinositide phosphorylation // inferred from electronic annotation /// 0046854 // phosphoinositide phosphorylation // not recorded /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation 0005942 // phosphoinositide 3-kinase complex // inferred from electronic annotation 0004428 // inositol or phosphatidylinositol kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1378507_at BE108914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108914 /DB_XREF=gi:8501019 /DB_XREF=UI-R-BS1-ayz-h-02-0-UI.s1 /CLONE=UI-R-BS1-ayz-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.23362.1 /TIER=ConsEnd /STK=3 /UG=Rn.23362 /UG_TITLE=ESTs BE108914 1378508_at BE108221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108221 /DB_XREF=gi:8500291 /DB_XREF=UI-R-BS1-ayw-d-08-0-UI.s1 /CLONE=UI-R-BS1-ayw-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.51429.1 /TIER=ConsEnd /STK=3 /UG=Rn.51429 /UG_TITLE=ESTs BE108221 0006470 // protein dephosphorylation // inferred from electronic annotation 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1378509_at BF397677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397677 /DB_XREF=gi:11382661 /DB_XREF=UI-R-BS2-bed-d-02-0-UI.s1 /CLONE=UI-R-BS2-bed-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.26789.1 /TIER=ConsEnd /STK=3 /UG=Rn.26789 /UG_TITLE=ESTs, Weakly similar to kinesin family member 3C (Rattus norvegicus) (R.norvegicus) BF397677 kinesin family member 3a Kif3a 84392 NM_053377 0001701 // in utero embryonic development // not recorded /// 0001822 // kidney development // not recorded /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // not recorded /// 0007368 // determination of left/right symmetry // not recorded /// 0007507 // heart development // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0021904 // dorsal/ventral neural tube patterning // not recorded /// 0042384 // cilium assembly // not recorded /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from direct assay /// 0060271 // cilium morphogenesis // not recorded 0005874 // microtubule // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0035085 // cilium axoneme // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1378510_at BF386239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386239 /DB_XREF=gi:11371063 /DB_XREF=UI-R-CA1-bbc-c-04-0-UI.s1 /CLONE=UI-R-CA1-bbc-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.61232.1 /TIER=ConsEnd /STK=3 /UG=Rn.61232 /UG_TITLE=ESTs BF386239 1378511_at BF390750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390750 /DB_XREF=gi:11375597 /DB_XREF=UI-R-CA1-bcp-a-05-0-UI.s1 /CLONE=UI-R-CA1-bcp-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.62570.1 /TIER=ConsEnd /STK=3 /UG=Rn.62570 /UG_TITLE=ESTs BF390750 1378512_at BF396119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396119 /DB_XREF=gi:11381091 /DB_XREF=UI-R-CA1-bcb-e-08-0-UI.s1 /CLONE=UI-R-CA1-bcb-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.63462.1 /TIER=ConsEnd /STK=3 /UG=Rn.63462 /UG_TITLE=ESTs BF396119 1378513_at BF415038 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415038 /DB_XREF=gi:11403027 /DB_XREF=UI-R-BJ2-boy-h-10-0-UI.s1 /CLONE=UI-R-BJ2-boy-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.62632.1 /TIER=ConsEnd /STK=3 /UG=Rn.62632 /UG_TITLE=ESTs BF415038 1378514_at BF399575 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399575 /DB_XREF=gi:11384583 /DB_XREF=UI-R-CA0-bht-d-03-0-UI.s2 /CLONE=UI-R-CA0-bht-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.64305.1 /TIER=ConsEnd /STK=3 /UG=Rn.64305 /UG_TITLE=ESTs BF399575 1378515_at BE116005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116005 /DB_XREF=gi:8508110 /DB_XREF=UI-R-BS1-axy-d-06-0-UI.s1 /CLONE=UI-R-BS1-axy-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.26529.1 /TIER=ConsEnd /STK=3 /UG=Rn.26529 /UG_TITLE=ESTs BE116005 1378516_at BF409076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409076 /DB_XREF=gi:11397051 /DB_XREF=UI-R-BT1-bkl-g-02-0-UI.s1 /CLONE=UI-R-BT1-bkl-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.61239.1 /TIER=ConsEnd /STK=3 /UG=Rn.61239 /UG_TITLE=ESTs BF409076 1378517_at AI176472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176472 /DB_XREF=gi:4134881 /DB_XREF=EST220057 /CLONE=ROVBS24 /FEA=EST /CNT=3 /TID=Rn.6313.1 /TIER=ConsEnd /STK=3 /UG=Rn.6313 /UG_TITLE=ESTs AI176472 1378518_at BF394458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394458 /DB_XREF=gi:11379324 /DB_XREF=UI-R-CA0-bfw-a-11-0-UI.s1 /CLONE=UI-R-CA0-bfw-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.52785.1 /TIER=ConsEnd /STK=3 /UG=Rn.52785 /UG_TITLE=ESTs BF394458 Ewing sarcoma breakpoint region 1 Ewsr1 289752 NM_001025632 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0015030 // Cajal body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1378519_at BF398120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398120 /DB_XREF=gi:11383106 /DB_XREF=UI-R-BS2-bem-f-04-0-UI.s1 /CLONE=UI-R-BS2-bem-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.61274.1 /TIER=ConsEnd /STK=3 /UG=Rn.61274 /UG_TITLE=ESTs BF398120 1378520_at BF398531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398531 /DB_XREF=gi:11383524 /DB_XREF=UI-R-BS2-bep-h-05-0-UI.s1 /CLONE=UI-R-BS2-bep-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.62546.1 /TIER=ConsEnd /STK=3 /UG=Rn.62546 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) BF398531 B-cell CLL/lymphoma 11B (zinc finger protein) Bcl11b 314423 NM_001108057 0007409 // axonogenesis // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009791 // post-embryonic development // not recorded /// 0021953 // central nervous system neuron differentiation // not recorded /// 0031077 // post-embryonic camera-type eye development // not recorded /// 0033153 // T cell receptor V(D)J recombination // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046632 // alpha-beta T cell differentiation // not recorded /// 0048538 // thymus development // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1378521_at BF407156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407156 /DB_XREF=gi:11395131 /DB_XREF=UI-R-BJ2-bqw-c-12-0-UI.s1 /CLONE=UI-R-BJ2-bqw-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.61015.1 /TIER=ConsEnd /STK=3 /UG=Rn.61015 /UG_TITLE=ESTs BF407156 Hypothetical protein LOC690511 LOC690511 690511 XM_001070904 /// XM_001074650 1378522_at BG373062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373062 /DB_XREF=gi:13269599 /DB_XREF=UI-R-CV1-bsf-a-11-0-UI.s1 /CLONE=UI-R-CV1-bsf-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.76509.1 /TIER=ConsEnd /STK=3 /UG=Rn.76509 /UG_TITLE=ESTs BG373062 1378523_at BM384097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384097 /DB_XREF=gi:18184150 /DB_XREF=UI-R-DZ0-cks-d-13-0-UI.s1 /CLONE=UI-R-DZ0-cks-d-13-0-UI /FEA=EST /CNT=3 /TID=Rn.28526.1 /TIER=ConsEnd /STK=3 /UG=Rn.28526 /UG_TITLE=ESTs BM384097 tetratricopeptide repeat domain 12 Ttc12 300696 NM_001004246 0005488 // binding // inferred from electronic annotation 1378524_at AW533310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533310 /DB_XREF=gi:7175724 /DB_XREF=UI-R-BU0-anf-d-04-0-UI.s1 /CLONE=UI-R-BU0-anf-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.47841.1 /TIER=ConsEnd /STK=3 /UG=Rn.47841 /UG_TITLE=ESTs AW533310 ring finger protein 19A Rnf19a 362900 NM_001130560 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378525_at BF394459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394459 /DB_XREF=gi:11379325 /DB_XREF=UI-R-CA0-bfw-a-12-0-UI.s1 /CLONE=UI-R-CA0-bfw-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.62725.1 /TIER=ConsEnd /STK=3 /UG=Rn.62725 /UG_TITLE=ESTs BF394459 1378526_at AI012423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012423 /DB_XREF=gi:3226255 /DB_XREF=EST206874 /CLONE=RPLAX07 /FEA=EST /CNT=3 /TID=Rn.11902.1 /TIER=ConsEnd /STK=3 /UG=Rn.11902 /UG_TITLE=ESTs AI012423 GTPase, IMAP family member 6 Gimap6 297076 NM_001011968 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1378527_at BF403857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403857 /DB_XREF=gi:11391832 /DB_XREF=UI-R-CA1-bix-l-11-0-UI.s1 /CLONE=UI-R-CA1-bix-l-11-0-UI /FEA=EST /CNT=3 /TID=Rn.60375.1 /TIER=ConsEnd /STK=3 /UG=Rn.60375 /UG_TITLE=ESTs, Moderately similar to T02672 hypothetical protein R31449_3 (H.sapiens) BF403857 similar to cactin CG1676-PA LOC303590 303590 XR_006385 /// XR_009473 1378528_at BF405022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405022 /DB_XREF=gi:11392997 /DB_XREF=UI-R-CA1-bio-f-04-0-UI.s1 /CLONE=UI-R-CA1-bio-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.63399.1 /TIER=ConsEnd /STK=3 /UG=Rn.63399 /UG_TITLE=ESTs BF405022 1378529_at BE109895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109895 /DB_XREF=gi:8502000 /DB_XREF=UI-R-CA0-axi-f-05-0-UI.s1 /CLONE=UI-R-CA0-axi-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.49056.1 /TIER=ConsEnd /STK=3 /UG=Rn.49056 /UG_TITLE=ESTs BE109895 1378530_at BF394061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394061 /DB_XREF=gi:11378925 /DB_XREF=UI-R-CA0-bgy-e-10-0-UI.s1 /CLONE=UI-R-CA0-bgy-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.62727.1 /TIER=ConsEnd /STK=3 /UG=Rn.62727 /UG_TITLE=ESTs BF394061 protein phosphatase 2, regulatory subunit B', epsilon isoform Ppp2r5e 299147 NM_001106740 0007165 // signal transduction // inferred from electronic annotation 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008601 // protein phosphatase type 2A regulator activity // inferred from electronic annotation 1378531_at AI555775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555775 /DB_XREF=gi:4488138 /DB_XREF=UI-R-C2p-qs-g-12-0-UI.s1 /CLONE=UI-R-C2p-qs-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.38591.1 /TIER=ConsEnd /STK=3 /UG=Rn.38591 /UG_TITLE=ESTs AI555775 1378532_at AI407172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407172 /DB_XREF=gi:4250676 /DB_XREF=EST235460 /CLONE=ROVDS12 /FEA=EST /CNT=3 /TID=Rn.39305.1 /TIER=ConsEnd /STK=3 /UG=Rn.39305 /UG_TITLE=ESTs AI407172 1378533_at BE113482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113482 /DB_XREF=gi:8505587 /DB_XREF=UI-R-BJ1-awl-g-12-0-UI.s1 /CLONE=UI-R-BJ1-awl-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.49047.1 /TIER=ConsEnd /STK=3 /UG=Rn.49047 /UG_TITLE=ESTs, Weakly similar to S18188 notch protein homolog - rat (R.norvegicus) BE113482 Notch homolog 4 (Drosophila) Notch4 406162 NM_001002827 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001763 // morphogenesis of a branching structure // inferred from electronic annotation /// 0001763 // morphogenesis of a branching structure // not recorded /// 0001886 // endothelial cell morphogenesis // inferred from direct assay /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030879 // mammary gland development // inferred from electronic annotation /// 0030879 // mammary gland development // not recorded /// 0045446 // endothelial cell differentiation // inferred from direct assay /// 0045602 // negative regulation of endothelial cell differentiation // inferred from electronic annotation /// 0045602 // negative regulation of endothelial cell differentiation // not recorded /// 0050793 // regulation of developmental process // inferred from electronic annotation 0005886 // plasma membrane // inferred from mutant phenotype /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378534_at AI178797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178797 /DB_XREF=gi:3729435 /DB_XREF=EST222479 /CLONE=RSPBM70 /FEA=EST /CNT=3 /TID=Rn.34004.1 /TIER=ConsEnd /STK=3 /UG=Rn.34004 /UG_TITLE=ESTs, Weakly similar to A54879 pregnancy-specific glycoprotein rnCGM3 - rat (R.norvegicus) AI178797 pregnancy specific glycoprotein 16 Psg16 308394 NM_001025679 1378535_at AI639231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639231 /DB_XREF=gi:4700265 /DB_XREF=rx04763s /CLONE=rx04763 /FEA=EST /CNT=3 /TID=Rn.39283.1 /TIER=ConsEnd /STK=3 /UG=Rn.39283 /UG_TITLE=ESTs, Highly similar to T46480 hypothetical protein DKFZp434L1850.1 (H.sapiens) AI639231 PHD finger protein 7 Phf7 364510 NM_001012211 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378536_at AI638960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI638960 /DB_XREF=gi:4699994 /DB_XREF=rx00909s /CLONE=rx00909 /FEA=EST /CNT=3 /TID=Rn.16596.1 /TIER=ConsEnd /STK=3 /UG=Rn.16596 /UG_TITLE=ESTs AI638960 hook homolog 1 (Drosophila) Hook1 313370 NM_001107946 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0007032 // endosome organization // not recorded /// 0007040 // lysosome organization // not recorded /// 0007286 // spermatid development // not recorded /// 0008333 // endosome to lysosome transport // not recorded /// 0045022 // early endosome to late endosome transport // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005874 // microtubule // not recorded /// 0030897 // HOPS complex // not recorded /// 0070695 // FHF complex // not recorded 0003779 // actin binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0042802 // identical protein binding // not recorded 1378537_at BI289126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289126 /DB_XREF=gi:14946379 /DB_XREF=UI-R-DK0-cfe-g-08-0-UI.s1 /CLONE=UI-R-DK0-cfe-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.61067.1 /TIER=ConsEnd /STK=3 /UG=Rn.61067 /UG_TITLE=ESTs BI289126 1378538_at AW251819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251819 /DB_XREF=gi:6595410 /DB_XREF=UI-R-BJ0-adl-c-10-0-UI.s1 /CLONE=UI-R-BJ0-adl-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.43573.1 /TIER=ConsEnd /STK=3 /UG=Rn.43573 /UG_TITLE=ESTs, Weakly similar to RNPH_CAEEL RIBONUCLEASE PH-LIKE PROTEIN B0564.1 (C.elegans) AW251819 1378539_at AW528464 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528464 /DB_XREF=gi:7170878 /DB_XREF=UI-R-BO1-ajl-f-10-0-UI.s1 /CLONE=UI-R-BO1-ajl-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.46891.1 /TIER=ConsEnd /STK=3 /UG=Rn.46891 /UG_TITLE=ESTs AW528464 Hypothetical protein LOC688455 LOC688455 688455 XM_001054509 /// XM_001067023 1378540_at BI294763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294763 /DB_XREF=gi:14957534 /DB_XREF=UI-R-DK0-ceb-h-02-0-UI.s1 /CLONE=UI-R-DK0-ceb-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.16831.2 /TIER=ConsEnd /STK=3 /UG=Rn.16831 /UG_TITLE=ESTs BI294763 1378541_at BE116562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116562 /DB_XREF=gi:8508667 /DB_XREF=UI-R-BS1-ayj-f-10-0-UI.s1 /CLONE=UI-R-BS1-ayj-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.41818.1 /TIER=ConsEnd /STK=3 /UG=Rn.41818 /UG_TITLE=ESTs BE116562 1378542_at BF404484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404484 /DB_XREF=gi:11392459 /DB_XREF=UI-R-CA1-bif-h-07-0-UI.s1 /CLONE=UI-R-CA1-bif-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.57938.1 /TIER=ConsEnd /STK=3 /UG=Rn.57938 /UG_TITLE=ESTs BF404484 1378543_at BE108222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108222 /DB_XREF=gi:8500292 /DB_XREF=UI-R-BS1-ayw-d-09-0-UI.s1 /CLONE=UI-R-BS1-ayw-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.31315.1 /TIER=ConsEnd /STK=3 /UG=Rn.31315 /UG_TITLE=ESTs BE108222 1378544_at BE117471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117471 /DB_XREF=gi:8509576 /DB_XREF=UI-R-BS1-ayo-c-03-0-UI.s1 /CLONE=UI-R-BS1-ayo-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.50716.1 /TIER=ConsEnd /STK=3 /UG=Rn.50716 /UG_TITLE=ESTs, Moderately similar to T42727 proliferation potential-related protein - mouse (M.musculus) BE117471 retinoblastoma binding protein 6 Rbbp6 308968 XM_001073098 /// XM_001076339 /// XM_001076360 /// XM_219296 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1378545_at BF410294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410294 /DB_XREF=gi:11398269 /DB_XREF=UI-R-CA1-bjv-g-12-0-UI.s1 /CLONE=UI-R-CA1-bjv-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.62862.1 /TIER=ConsEnd /STK=3 /UG=Rn.62862 /UG_TITLE=ESTs BF410294 T-box 1 Tbx1 360737 NM_001108322 0001525 // angiogenesis // not recorded /// 0001568 // blood vessel development // not recorded /// 0001708 // cell fate specification // not recorded /// 0001755 // neural crest cell migration // not recorded /// 0001974 // blood vessel remodeling // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // not recorded /// 0007389 // pattern specification process // not recorded /// 0007498 // mesoderm development // not recorded /// 0007507 // heart development // not recorded /// 0007517 // muscle organ development // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0008283 // cell proliferation // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0030878 // thyroid gland development // not recorded /// 0035176 // social behavior // not recorded /// 0042471 // ear morphogenesis // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0042473 // outer ear morphogenesis // not recorded /// 0042474 // middle ear morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048514 // blood vessel morphogenesis // not recorded /// 0048538 // thymus development // not recorded /// 0048701 // embryonic cranial skeleton morphogenesis // not recorded /// 0048703 // embryonic viscerocranium morphogenesis // not recorded /// 0048844 // artery morphogenesis // not recorded /// 0060017 // parathyroid gland development // not recorded /// 0060023 // soft palate development // not recorded /// 0060037 // pharyngeal system development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0016563 // transcription activator activity // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // not recorded 1378546_at AI235245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235245 /DB_XREF=gi:4136067 /DB_XREF=EST231807 /CLONE=ROVCP35 /FEA=EST /CNT=3 /TID=Rn.15223.1 /TIER=ConsEnd /STK=3 /UG=Rn.15223 /UG_TITLE=ESTs, Weakly similar to T14742 hypothetical protein DKFZp586D0824.1 (H.sapiens) AI235245 1378547_at AI176027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176027 /DB_XREF=gi:3726665 /DB_XREF=EST219603 /CLONE=ROVBJ59 /FEA=EST /CNT=3 /TID=Rn.22520.1 /TIER=ConsEnd /STK=3 /UG=Rn.22520 /UG_TITLE=ESTs AI176027 1378548_at BF409866 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409866 /DB_XREF=gi:11397841 /DB_XREF=UI-R-CA1-bjr-g-02-0-UI.s1 /CLONE=UI-R-CA1-bjr-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.61509.1 /TIER=ConsEnd /STK=3 /UG=Rn.61509 /UG_TITLE=ESTs BF409866 1378549_at BF396244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396244 /DB_XREF=gi:11381216 /DB_XREF=UI-R-BS2-bdv-h-11-0-UI.s1 /CLONE=UI-R-BS2-bdv-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.62237.1 /TIER=ConsEnd /STK=3 /UG=Rn.62237 /UG_TITLE=ESTs BF396244 1378550_at BM384014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384014 /DB_XREF=gi:18184067 /DB_XREF=UI-R-DM1-ckb-e-22-0-UI.s1 /CLONE=UI-R-DM1-ckb-e-22-0-UI /FEA=EST /CNT=3 /TID=Rn.20550.1 /TIER=ConsEnd /STK=3 /UG=Rn.20550 /UG_TITLE=ESTs BM384014 Cas-Br-M (murine) ecotropic retroviral transforming sequence c Cblc 292699 NM_001034920 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007175 // negative regulation of epidermal growth factor receptor activity // inferred from electronic annotation /// 0007175 // negative regulation of epidermal growth factor receptor activity // not recorded /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // not recorded /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0043407 // negative regulation of MAP kinase activity // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // not recorded 0005634 // nucleus // inferred from electronic annotation 0001784 // phosphotyrosine binding // inferred from electronic annotation /// 0001784 // phosphotyrosine binding // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005154 // epidermal growth factor receptor binding // inferred from electronic annotation /// 0005154 // epidermal growth factor receptor binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1378551_at BE118606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118606 /DB_XREF=gi:8510711 /DB_XREF=UI-R-BJ1-azq-f-10-0-UI.s1 /CLONE=UI-R-BJ1-azq-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.49871.1 /TIER=ConsEnd /STK=3 /UG=Rn.49871 /UG_TITLE=ESTs BE118606 cytochrome P450, family 20, subfamily a, polypeptide 1 Cyp20a1 316435 NM_199401 0055114 // oxidation reduction // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378552_at BI286123 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286123 /DB_XREF=gi:14940457 /DB_XREF=UI-R-DD0-bzt-h-09-0-UI.s1 /CLONE=UI-R-DD0-bzt-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.18075.1 /TIER=ConsEnd /STK=3 /UG=Rn.18075 /UG_TITLE=ESTs, Weakly similar to mitogen activated protein kinase kinase kinase 5; MEK kinase 5 (Mus musculus) (M.musculus) BI286123 mitogen-activated protein kinase kinase kinase 6 Map3k6 313022 NM_001107909 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004709 // MAP kinase kinase kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1378553_at AI227711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227711 /DB_XREF=gi:3811598 /DB_XREF=EST224406 /CLONE=RBRCK52 /FEA=EST /CNT=3 /TID=Rn.49362.1 /TIER=ConsEnd /STK=3 /UG=Rn.49362 /UG_TITLE=ESTs AI227711 Hypothetical protein LOC685756 LOC685756 685756 NM_001109480 1378554_at AI413010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI413010 /DB_XREF=gi:4256514 /DB_XREF=EST241311 /CLONE=RBREC58 /FEA=EST /CNT=3 /TID=Rn.45533.1 /TIER=ConsEnd /STK=3 /UG=Rn.45533 /UG_TITLE=ESTs AI413010 1378555_at BE107055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107055 /DB_XREF=gi:8499160 /DB_XREF=UI-R-BS1-ayp-c-10-0-UI.s1 /CLONE=UI-R-BS1-ayp-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.16888.1 /TIER=ConsEnd /STK=3 /UG=Rn.16888 /UG_TITLE=ESTs BE107055 leucine rich repeat containing 28 Lrrc28 361588 NM_001108486 0005515 // protein binding // inferred from electronic annotation 1378556_at AI411989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411989 /DB_XREF=gi:4255493 /DB_XREF=EST240283 /CLONE=RKIEJ26 /FEA=EST /CNT=3 /TID=Rn.31522.1 /TIER=ConsEnd /STK=3 /UG=Rn.31522 /UG_TITLE=ESTs AI411989 1378557_at AI406645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406645 /DB_XREF=gi:4250149 /DB_XREF=EST234932 /CLONE=RBRDO09 /FEA=EST /CNT=3 /TID=Rn.43399.1 /TIER=ConsEnd /STK=3 /UG=Rn.43399 /UG_TITLE=ESTs AI406645 family with sequence similarity 19 (chemokine (C-C motif)-like), member A4 Fam19a4 689043 NM_001134700 1378558_at BF399466 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399466 /DB_XREF=gi:11384474 /DB_XREF=UI-R-CA1-bjb-n-15-0-UI.s1 /CLONE=UI-R-CA1-bjb-n-15-0-UI /FEA=EST /CNT=3 /TID=Rn.59352.1 /TIER=ConsEnd /STK=3 /UG=Rn.59352 /UG_TITLE=ESTs BF399466 1378559_at BF400658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400658 /DB_XREF=gi:11388633 /DB_XREF=UI-R-CA0-bhd-h-12-0-UI.s1 /CLONE=UI-R-CA0-bhd-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.61376.1 /TIER=ConsEnd /STK=3 /UG=Rn.61376 /UG_TITLE=ESTs BF400658 1378560_at BG373524 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373524 /DB_XREF=gi:13270061 /DB_XREF=UI-R-CS0-bsd-g-09-0-UI.s1 /CLONE=UI-R-CS0-bsd-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.45858.1 /TIER=ConsEnd /STK=3 /UG=Rn.45858 /UG_TITLE=ESTs, Highly similar to period homolog 2 (Drosophila) (Rattus norvegicus) (R.norvegicus) BG373524 period homolog 2 (Drosophila) Per2 63840 NM_031678 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from expression pattern /// 0007623 // circadian rhythm // not recorded /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1378561_at BE106215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106215 /DB_XREF=gi:8498317 /DB_XREF=UI-R-BO1-asl-c-12-0-UI.s1 /CLONE=UI-R-BO1-asl-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.47770.1 /TIER=ConsEnd /STK=3 /UG=Rn.47770 /UG_TITLE=ESTs BE106215 1378562_at BF403334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403334 /DB_XREF=gi:11391309 /DB_XREF=UI-R-CA1-biy-g-12-0-UI.s1 /CLONE=UI-R-CA1-biy-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.61227.1 /TIER=ConsEnd /STK=3 /UG=Rn.61227 /UG_TITLE=ESTs BF403334 1378563_at BI290050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290050 /DB_XREF=gi:14948253 /DB_XREF=UI-R-DK0-cfr-c-05-0-UI.s1 /CLONE=UI-R-DK0-cfr-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.59170.1 /TIER=ConsEnd /STK=3 /UG=Rn.59170 /UG_TITLE=ESTs BI290050 similar to RIKEN cDNA A130042E20; open reading frame 57 RGD1308722 361822 NM_001108529 0005739 // mitochondrion // not recorded 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1378564_at BE100585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100585 /DB_XREF=gi:8492480 /DB_XREF=UI-R-BJ1-auk-b-05-0-UI.s1 /CLONE=UI-R-BJ1-auk-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.33183.1 /TIER=ConsEnd /STK=3 /UG=Rn.33183 /UG_TITLE=ESTs, Moderately similar to EAR2_RAT ORPHAN NUCLEAR RECEPTOR EAR-2 (V-ERBA RELATED PROTEIN EAR-2) (OVALBUMIN UPSTREAM PROMOTER GAMMA NUCLEAR RECEPTOR RCOUPG) (R.norvegicus) BE100585 nuclear receptor subfamily 2, group F, member 6 Nr2f6 245980 NM_139113 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0043153 // entrainment of circadian clock by photoperiod // inferred from electronic annotation /// 0043153 // entrainment of circadian clock by photoperiod // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048666 // neuron development // inferred from electronic annotation /// 0048666 // neuron development // not recorded /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // inferred from electronic annotation /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378565_at AW435439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435439 /DB_XREF=gi:6966746 /DB_XREF=UI-R-BJ0p-afu-e-04-0-UI.s1 /CLONE=UI-R-BJ0p-afu-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.12753.1 /TIER=ConsEnd /STK=3 /UG=Rn.12753 /UG_TITLE=ESTs AW435439 1378566_at BG377991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377991 /DB_XREF=gi:13302463 /DB_XREF=UI-R-CU0-bvh-e-12-0-UI.s1 /CLONE=UI-R-CU0-bvh-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.20726.1 /TIER=ConsEnd /STK=3 /UG=Rn.20726 /UG_TITLE=ESTs BG377991 1378567_at BI295961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295961 /DB_XREF=gi:14959930 /DB_XREF=UI-R-DK0-cfc-g-08-0-UI.s1 /CLONE=UI-R-DK0-cfc-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.26825.1 /TIER=ConsEnd /STK=3 /UG=Rn.26825 /UG_TITLE=ESTs, Moderately similar to ZO3_MOUSE TIGHT JUNCTION PROTEIN ZO-3 (ZONA OCCLUDENS 3 PROTEIN) (TIGHT JUNCTION PROTEIN 3) (M.musculus) BI295961 tight junction protein 3 Tjp3 314640 NM_001108073 0005923 // tight junction // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378568_a_at BM389379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389379 /DB_XREF=gi:18189432 /DB_XREF=UI-R-CN1-cjk-g-01-0-UI.s1 /CLONE=UI-R-CN1-cjk-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.27888.1 /TIER=ConsEnd /STK=3 /UG=Rn.27888 /UG_TITLE=ESTs BM389379 1378569_at BI287991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287991 /DB_XREF=gi:14944136 /DB_XREF=UI-R-CX0s-ccw-g-01-0-UI.s1 /CLONE=UI-R-CX0s-ccw-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.19368.1 /TIER=ConsEnd /STK=3 /UG=Rn.19368 /UG_TITLE=ESTs BI287991 1378570_at AA849985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849985 /DB_XREF=gi:2937525 /DB_XREF=EST192752 /CLONE=RMUAL41 /FEA=EST /CNT=3 /TID=Rn.6539.1 /TIER=ConsEnd /STK=3 /UG=Rn.6539 /UG_TITLE=ESTs AA849985 1378571_at BF420620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420620 /DB_XREF=gi:11408609 /DB_XREF=UI-R-BJ2-bpy-b-09-0-UI.s1 /CLONE=UI-R-BJ2-bpy-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.38360.1 /TIER=ConsEnd /STK=3 /UG=Rn.38360 /UG_TITLE=ESTs, Weakly similar to T17248 hypothetical protein DKFZp586G1122.1 (H.sapiens) BF420620 zinc finger protein 385B Zfp385b 311137 NM_001107736 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378572_at BF408962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408962 /DB_XREF=gi:11396937 /DB_XREF=UI-R-BJ2-bpn-d-11-0-UI.s1 /CLONE=UI-R-BJ2-bpn-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.61213.1 /TIER=ConsEnd /STK=3 /UG=Rn.61213 /UG_TITLE=ESTs BF408962 toll interacting protein Tollip 361677 NM_001109668 0006954 // inflammatory response // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0016310 // phosphorylation // not recorded /// 0016310 // phosphorylation // inferred from sequence or structural similarity /// 0045087 // innate immune response // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019900 // kinase binding // not recorded /// 0035325 // Toll-like receptor binding // not recorded 1378573_at BE109768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109768 /DB_XREF=gi:8501873 /DB_XREF=UI-R-BJ1-aup-h-11-0-UI.s1 /CLONE=UI-R-BJ1-aup-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.33546.1 /TIER=ConsEnd /STK=3 /UG=Rn.33546 /UG_TITLE=ESTs BE109768 1378574_at AA818104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818104 /DB_XREF=gi:4198619 /DB_XREF=UI-R-A0-am-f-03-0-UI.s1 /CLONE=UI-R-A0-am-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.21870.1 /TIER=ConsEnd /STK=3 /UG=Rn.21870 /UG_TITLE=ESTs, Weakly similar to PROTEASOME IOTA CHAIN (R.norvegicus) AA818104 hypothetical LOC100125377 LOC100125377 100125377 XR_085741 /// XR_086157 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005839 // proteasome core complex // inferred from electronic annotation 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1378575_at BF404457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404457 /DB_XREF=gi:11392432 /DB_XREF=UI-R-CA1-bif-e-09-0-UI.s1 /CLONE=UI-R-CA1-bif-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.60512.1 /TIER=ConsEnd /STK=3 /UG=Rn.60512 /UG_TITLE=ESTs BF404457 1378576_at BI299039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299039 /DB_XREF=gi:14975319 /DB_XREF=UI-R-CV2-chq-e-04-0-UI.s1 /CLONE=UI-R-CV2-chq-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.73038.1 /TIER=ConsEnd /STK=3 /UG=Rn.73038 /UG_TITLE=ESTs BI299039 sirtuin (silent mating type information regulation 2 homolog) 4 (S. cerevisiae) Sirt4 304539 NM_001107147 0006342 // chromatin silencing // inferred from electronic annotation /// 0006476 // protein deacetylation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0046676 // negative regulation of insulin secretion // inferred from electronic annotation /// 0046676 // negative regulation of insulin secretion // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from electronic annotation /// 0003950 // NAD+ ADP-ribosyltransferase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016811 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides // inferred from electronic annotation /// 0034979 // NAD-dependent protein deacetylase activity // not recorded /// 0070403 // NAD binding // inferred from electronic annotation 1378577_a_at BF407188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407188 /DB_XREF=gi:11395163 /DB_XREF=UI-R-BJ2-bqw-f-10-0-UI.s1 /CLONE=UI-R-BJ2-bqw-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.34822.1 /TIER=ConsEnd /STK=3 /UG=Rn.34822 /UG_TITLE=ESTs, Weakly similar to ZN42_HUMAN ZINC FINGER PROTEIN 42 (MYELOID ZINC FINGER 1) (MZF-1) (H.sapiens) BF407188 myeloid zinc finger 1 Mzf1 361508 NM_001108470 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378578_at BE117291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117291 /DB_XREF=gi:8509396 /DB_XREF=UI-R-BS1-ayn-a-09-0-UI.s1 /CLONE=UI-R-BS1-ayn-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.52813.1 /TIER=ConsEnd /STK=3 /UG=Rn.52813 /UG_TITLE=ESTs BE117291 1378579_at BF394125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394125 /DB_XREF=gi:11378989 /DB_XREF=UI-R-CA0-bgz-h-01-0-UI.s1 /CLONE=UI-R-CA0-bgz-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.59786.1 /TIER=ConsEnd /STK=3 /UG=Rn.59786 /UG_TITLE=ESTs BF394125 1378580_at AI007848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI007848 /DB_XREF=gi:3221680 /DB_XREF=EST202299 /CLONE=RBRAV64 /FEA=EST /CNT=3 /TID=Rn.46461.1 /TIER=ConsEnd /STK=3 /UG=Rn.46461 /UG_TITLE=ESTs, Weakly similar to S21976 probable RNA-directed DNA polymerase (R.norvegicus) AI007848 1378581_at BI295536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295536 /DB_XREF=gi:14959082 /DB_XREF=UI-R-DK0-cev-e-08-0-UI.s1 /CLONE=UI-R-DK0-cev-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.52196.1 /TIER=ConsEnd /STK=3 /UG=Rn.52196 /UG_TITLE=ESTs BI295536 coiled-coil domain containing 62 Ccdc62 689909 NM_001134766 1378582_at BM383666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383666 /DB_XREF=gi:18183719 /DB_XREF=UI-R-DM1-cka-p-04-0-UI.s1 /CLONE=UI-R-DM1-cka-p-04-0-UI /FEA=EST /CNT=3 /TID=Rn.11770.2 /TIER=ConsEnd /STK=3 /UG=Rn.11770 /UG_TITLE=ESTs BM383666 TraB domain containing Trabd 300142 NM_001106788 1378583_at BI278145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278145 /DB_XREF=gi:14924707 /DB_XREF=UI-R-CZ0-byd-h-07-0-UI.s1 /CLONE=UI-R-CZ0-byd-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.51046.1 /TIER=ConsEnd /STK=3 /UG=Rn.51046 /UG_TITLE=ESTs BI278145 similar to Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP) RGD1566215 301742 NM_001106929 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0030117 // membrane coat // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1378584_at BF419393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419393 /DB_XREF=gi:11407382 /DB_XREF=UI-R-CA1-bnr-b-06-0-UI.s1 /CLONE=UI-R-CA1-bnr-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.63500.1 /TIER=ConsEnd /STK=3 /UG=Rn.63500 /UG_TITLE=ESTs BF419393 1378585_at BG372582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372582 /DB_XREF=gi:13269119 /DB_XREF=UI-R-CV1-brv-h-01-0-UI.s1 /CLONE=UI-R-CV1-brv-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.73423.1 /TIER=ConsEnd /STK=3 /UG=Rn.73423 /UG_TITLE=ESTs BG372582 1378586_at BI291842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291842 /DB_XREF=gi:14951778 /DB_XREF=UI-R-DN0-cit-n-22-0-UI.s1 /CLONE=UI-R-DN0-cit-n-22-0-UI /FEA=EST /CNT=3 /TID=Rn.56451.1 /TIER=ConsEnd /STK=3 /UG=Rn.56451 /UG_TITLE=ESTs BI291842 cytokine inducible SH2-containing protein Cish 83681 NM_031804 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // not recorded /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from expression pattern /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0040008 // regulation of growth // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378587_at BE105705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105705 /DB_XREF=gi:8497847 /DB_XREF=UI-R-BO1-asi-e-10-0-UI.s1 /CLONE=UI-R-BO1-asi-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.62889.1 /TIER=ConsEnd /STK=3 /UG=Rn.62889 /UG_TITLE=ESTs BE105705 ankyrin repeat domain 40 Ankrd40 690586 NM_001134699 1378588_at AW527143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527143 /DB_XREF=gi:7169557 /DB_XREF=UI-R-BO1-ajm-a-07-0-UI.s1 /CLONE=UI-R-BO1-ajm-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.49101.1 /TIER=ConsEnd /STK=3 /UG=Rn.49101 /UG_TITLE=ESTs AW527143 1378589_at BG378163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378163 /DB_XREF=gi:13302635 /DB_XREF=UI-R-CV1-bvo-g-02-0-UI.s1 /CLONE=UI-R-CV1-bvo-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.66546.1 /TIER=ConsEnd /STK=3 /UG=Rn.66546 /UG_TITLE=ESTs BG378163 1378590_at AW527807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527807 /DB_XREF=gi:7170186 /DB_XREF=UI-R-BO1-ajk-a-03-0-UI.s1 /CLONE=UI-R-BO1-ajk-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.46655.1 /TIER=ConsEnd /STK=3 /UG=Rn.46655 /UG_TITLE=ESTs AW527807 1378591_at AI556452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556452 /DB_XREF=gi:4488815 /DB_XREF=UI-R-C2p-rh-g-05-0-UI.s1 /CLONE=UI-R-C2p-rh-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.39066.1 /TIER=ConsEnd /STK=3 /UG=Rn.39066 /UG_TITLE=ESTs AI556452 1378592_at BF396210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396210 /DB_XREF=gi:11381147 /DB_XREF=UI-R-BS2-bdv-b-08-0-UI.s1 /CLONE=UI-R-BS2-bdv-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.40738.1 /TIER=ConsEnd /STK=3 /UG=Rn.40738 /UG_TITLE=ESTs BF396210 tripartite motif-containing 59 Trim59 365813 NM_001108945 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378593_at BF405043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405043 /DB_XREF=gi:11393018 /DB_XREF=UI-R-CA1-bio-h-07-0-UI.s1 /CLONE=UI-R-CA1-bio-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.57843.1 /TIER=ConsEnd /STK=3 /UG=Rn.57843 /UG_TITLE=ESTs BF405043 1378594_at BF402379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402379 /DB_XREF=gi:11390354 /DB_XREF=UI-R-CA0-bhn-e-09-0-UI.s1 /CLONE=UI-R-CA0-bhn-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.61957.1 /TIER=ConsEnd /STK=3 /UG=Rn.61957 /UG_TITLE=ESTs BF402379 1378595_at BE113427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113427 /DB_XREF=gi:8505532 /DB_XREF=UI-R-BJ1-awl-c-02-0-UI.s1 /CLONE=UI-R-BJ1-awl-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.11878.1 /TIER=ConsEnd /STK=3 /UG=Rn.11878 /UG_TITLE=ESTs BE113427 1378596_at BF398000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398000 /DB_XREF=gi:11382985 /DB_XREF=UI-R-BS2-beg-b-09-0-UI.s1 /CLONE=UI-R-BS2-beg-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.44053.1 /TIER=ConsEnd /STK=3 /UG=Rn.44053 /UG_TITLE=ESTs BF398000 1378597_at BF403721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403721 /DB_XREF=gi:11391696 /DB_XREF=UI-R-CA1-bix-p-16-0-UI.s1 /CLONE=UI-R-CA1-bix-p-16-0-UI /FEA=EST /CNT=3 /TID=Rn.60182.1 /TIER=ConsEnd /STK=3 /UG=Rn.60182 /UG_TITLE=ESTs BF403721 1378598_at BF401579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401579 /DB_XREF=gi:11389554 /DB_XREF=UI-R-CA0-bgm-c-08-0-UI.s1 /CLONE=UI-R-CA0-bgm-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.60272.1 /TIER=ConsEnd /STK=3 /UG=Rn.60272 /UG_TITLE=ESTs BF401579 1378599_at BF412298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412298 /DB_XREF=gi:11400287 /DB_XREF=UI-R-BT1-bnb-h-04-0-UI.s1 /CLONE=UI-R-BT1-bnb-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.62054.1 /TIER=ConsEnd /STK=3 /UG=Rn.62054 /UG_TITLE=ESTs BF412298 1378600_at AI112986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112986 /DB_XREF=gi:3512935 /DB_XREF=UI-R-E1-go-d-08-0-UI.s1 /CLONE=UI-R-E1-go-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.18279.1 /TIER=ConsEnd /STK=3 /UG=Rn.18279 /UG_TITLE=ESTs AI112986 TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa Taf1d 363017 NM_001014207 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378601_at AI413056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI413056 /DB_XREF=gi:4256560 /DB_XREF=EST241357 /CLONE=RBREC24 /FEA=EST /CNT=3 /TID=Rn.18559.1 /TIER=ConsEnd /STK=3 /UG=Rn.18559 /UG_TITLE=ESTs AI413056 1378602_at BE098753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098753 /DB_XREF=gi:8490622 /DB_XREF=UI-R-BJ1-atd-e-05-0-UI.s1 /CLONE=UI-R-BJ1-atd-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.49066.1 /TIER=ConsEnd /STK=3 /UG=Rn.49066 /UG_TITLE=ESTs BE098753 1378603_at BM387125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387125 /DB_XREF=gi:18187178 /DB_XREF=UI-R-CN1-cji-b-15-0-UI.s1 /CLONE=UI-R-CN1-cji-b-15-0-UI /FEA=EST /CNT=3 /TID=Rn.54948.1 /TIER=ConsEnd /STK=3 /UG=Rn.54948 /UG_TITLE=ESTs BM387125 1378604_at BF396495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396495 /DB_XREF=gi:11381469 /DB_XREF=UI-R-BS2-bdy-g-10-0-UI.s1 /CLONE=UI-R-BS2-bdy-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.58259.1 /TIER=ConsEnd /STK=3 /UG=Rn.58259 /UG_TITLE=ESTs BF396495 1378605_at AA818702 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818702 /DB_XREF=gi:4227384 /DB_XREF=UI-R-A0-az-c-08-0-UI.s1 /CLONE=UI-R-A0-az-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.16525.1 /TIER=ConsEnd /STK=3 /UG=Rn.16525 /UG_TITLE=ESTs AA818702 single immunoglobulin and toll-interleukin 1 receptor (TIR) domain Sigirr 309106 NM_001024887 0001960 // negative regulation of cytokine-mediated signaling pathway // not recorded /// 0001960 // negative regulation of cytokine-mediated signaling pathway // inferred from sequence or structural similarity /// 0001960 // negative regulation of cytokine-mediated signaling pathway // inferred from electronic annotation /// 0006953 // acute-phase response // not recorded /// 0006953 // acute-phase response // inferred from sequence or structural similarity /// 0006953 // acute-phase response // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0043433 // negative regulation of transcription factor activity // inferred from sequence or structural similarity /// 0045079 // negative regulation of chemokine biosynthetic process // not recorded /// 0045079 // negative regulation of chemokine biosynthetic process // inferred from sequence or structural similarity /// 0045079 // negative regulation of chemokine biosynthetic process // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031224 // intrinsic to membrane // inferred from electronic annotation 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378606_at AI010216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010216 /DB_XREF=gi:3224048 /DB_XREF=EST204667 /CLONE=RLUBV29 /FEA=EST /CNT=3 /TID=Rn.40172.1 /TIER=ConsEnd /STK=3 /UG=Rn.40172 /UG_TITLE=ESTs AI010216 family with sequence similarity 13, member B1 Fam13b1 291694 NM_001106158 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 1378607_at BE098816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098816 /DB_XREF=gi:8490685 /DB_XREF=UI-R-BJ1-ate-b-11-0-UI.s1 /CLONE=UI-R-BJ1-ate-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.45746.1 /TIER=ConsEnd /STK=3 /UG=Rn.45746 /UG_TITLE=ESTs BE098816 1378608_at BF417283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417283 /DB_XREF=gi:11405272 /DB_XREF=UI-R-CN0-bky-c-03-0-UI.s1 /CLONE=UI-R-CN0-bky-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.63206.1 /TIER=ConsEnd /STK=3 /UG=Rn.63206 /UG_TITLE=ESTs, Weakly similar to synapsin Ia (R.norvegicus) BF417283 1378609_at AI113031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113031 /DB_XREF=gi:3512980 /DB_XREF=UI-R-E1-gp-g-10-0-UI.s1 /CLONE=UI-R-E1-gp-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.26898.1 /TIER=ConsEnd /STK=3 /UG=Rn.26898 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) AI113031 zinc finger-like protein-like LOC100362083 100362083 XM_002728394 1378610_at BG378206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378206 /DB_XREF=gi:13302678 /DB_XREF=UI-R-CV1-bvp-c-05-0-UI.s1 /CLONE=UI-R-CV1-bvp-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.66552.1 /TIER=ConsEnd /STK=3 /UG=Rn.66552 /UG_TITLE=ESTs BG378206 1378611_at BE112744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112744 /DB_XREF=gi:8504849 /DB_XREF=UI-R-BJ1-avo-c-11-0-UI.s1 /CLONE=UI-R-BJ1-avo-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.15626.1 /TIER=ConsEnd /STK=3 /UG=Rn.15626 /UG_TITLE=ESTs BE112744 1378612_at BF404501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404501 /DB_XREF=gi:11392516 /DB_XREF=UI-R-CA1-big-f-09-0-UI.s1 /CLONE=UI-R-CA1-big-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.63040.1 /TIER=ConsEnd /STK=3 /UG=Rn.63040 /UG_TITLE=ESTs BF404501 1378613_at BF404986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404986 /DB_XREF=gi:11392961 /DB_XREF=UI-R-CA1-bio-a-12-0-UI.s1 /CLONE=UI-R-CA1-bio-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.64408.1 /TIER=ConsEnd /STK=3 /UG=Rn.64408 /UG_TITLE=ESTs BF404986 1378614_at BI274329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274329 /DB_XREF=gi:14885160 /DB_XREF=UI-R-CW0-bwh-f-05-0-UI.s1 /CLONE=UI-R-CW0-bwh-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.23736.1 /TIER=ConsEnd /STK=3 /UG=Rn.23736 /UG_TITLE=ESTs BI274329 1378615_at BE112424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112424 /DB_XREF=gi:8504529 /DB_XREF=UI-R-BJ1-avm-e-05-0-UI.s1 /CLONE=UI-R-BJ1-avm-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.38306.1 /TIER=ConsEnd /STK=3 /UG=Rn.38306 /UG_TITLE=ESTs BE112424 1378616_at BG380791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380791 /DB_XREF=gi:13305263 /DB_XREF=UI-R-CT0-bub-d-12-0-UI.s1 /CLONE=UI-R-CT0-bub-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.7708.1 /TIER=ConsEnd /STK=3 /UG=Rn.7708 /UG_TITLE=ESTs BG380791 1378617_at BM390846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390846 /DB_XREF=gi:18190899 /DB_XREF=UI-R-CN1-cjo-n-14-0-UI.s1 /CLONE=UI-R-CN1-cjo-n-14-0-UI /FEA=EST /CNT=3 /TID=Rn.46284.1 /TIER=ConsEnd /STK=3 /UG=Rn.46284 /UG_TITLE=ESTs BM390846 transcriptional regulating factor 1 Trerf1 316219 NM_001108199 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1378618_at BF392356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392356 /DB_XREF=gi:11377213 /DB_XREF=UI-R-CA0-bfi-b-10-0-UI.s1 /CLONE=UI-R-CA0-bfi-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.57359.1 /TIER=ConsEnd /STK=3 /UG=Rn.57359 /UG_TITLE=ESTs BF392356 1378619_at AW434893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434893 /DB_XREF=gi:6966200 /DB_XREF=UI-R-BJ0p-afg-c-08-0-UI.s1 /CLONE=UI-R-BJ0p-afg-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.54336.1 /TIER=ConsEnd /STK=3 /UG=Rn.54336 /UG_TITLE=ESTs AW434893 similar to novel protein RGD1563533 313713 XM_002726658 /// XM_002729564 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1378620_at BE104164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104164 /DB_XREF=gi:8496264 /DB_XREF=UI-R-BX0-arl-e-05-0-UI.s1 /CLONE=UI-R-BX0-arl-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.46275.1 /TIER=ConsEnd /STK=3 /UG=Rn.46275 /UG_TITLE=ESTs BE104164 1378621_at BE121126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121126 /DB_XREF=gi:8513231 /DB_XREF=UI-R-CA0-bau-d-03-0-UI.s1 /CLONE=UI-R-CA0-bau-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.53009.1 /TIER=ConsEnd /STK=3 /UG=Rn.53009 /UG_TITLE=ESTs BE121126 1378622_at BE119435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119435 /DB_XREF=gi:8511540 /DB_XREF=UI-R-CA0-bac-f-07-0-UI.s1 /CLONE=UI-R-CA0-bac-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.53244.1 /TIER=ConsEnd /STK=3 /UG=Rn.53244 /UG_TITLE=ESTs BE119435 1378623_at BE095875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095875 /DB_XREF=gi:8486806 /DB_XREF=UI-R-BU0-apb-f-02-0-UI.s1 /CLONE=UI-R-BU0-apb-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.46358.1 /TIER=ConsEnd /STK=3 /UG=Rn.46358 /UG_TITLE=ESTs BE095875 1378624_at BE107074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107074 /DB_XREF=gi:8499179 /DB_XREF=UI-R-BS1-ayp-e-08-0-UI.s1 /CLONE=UI-R-BS1-ayp-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.50650.1 /TIER=ConsEnd /STK=3 /UG=Rn.50650 /UG_TITLE=ESTs BE107074 1378625_at BF392502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392502 /DB_XREF=gi:11377359 /DB_XREF=UI-R-CA0-bfk-a-02-0-UI.s1 /CLONE=UI-R-CA0-bfk-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.57837.1 /TIER=ConsEnd /STK=3 /UG=Rn.57837 /UG_TITLE=ESTs BF392502 1378626_at BF409239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409239 /DB_XREF=gi:11397214 /DB_XREF=UI-R-BT1-bkn-f-09-0-UI.s1 /CLONE=UI-R-BT1-bkn-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.61291.1 /TIER=ConsEnd /STK=3 /UG=Rn.61291 /UG_TITLE=ESTs BF409239 1378627_at BE120328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120328 /DB_XREF=gi:8512433 /DB_XREF=UI-R-CA0-baq-b-08-0-UI.s1 /CLONE=UI-R-CA0-baq-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.61063.1 /TIER=ConsEnd /STK=3 /UG=Rn.61063 /UG_TITLE=ESTs BE120328 1378628_at BF411451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411451 /DB_XREF=gi:11399433 /DB_XREF=UI-R-CN0-bmk-e-10-0-UI.s1 /CLONE=UI-R-CN0-bmk-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.61844.1 /TIER=ConsEnd /STK=3 /UG=Rn.61844 /UG_TITLE=ESTs BF411451 1378629_at AI227638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227638 /DB_XREF=gi:3811525 /DB_XREF=EST224333 /CLONE=RBRCJ59 /FEA=EST /CNT=3 /TID=Rn.24251.1 /TIER=ConsEnd /STK=3 /UG=Rn.24251 /UG_TITLE=ESTs, Highly similar to A56208 DNA-binding protein SATB1 - mouse (M.musculus) AI227638 SATB homeobox 1 Satb1 316164 NM_001012129 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006325 // chromatin organization // inferred from electronic annotation /// 0006325 // chromatin organization // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0016571 // histone methylation // inferred from electronic annotation /// 0016571 // histone methylation // not recorded /// 0042110 // T cell activation // inferred from electronic annotation /// 0042110 // T cell activation // not recorded /// 0043367 // CD4-positive, alpha beta T cell differentiation // inferred from electronic annotation /// 0043367 // CD4-positive, alpha beta T cell differentiation // not recorded /// 0043374 // CD8-positive, alpha-beta T cell differentiation // inferred from electronic annotation /// 0043374 // CD8-positive, alpha-beta T cell differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0050798 // activated T cell proliferation // inferred from electronic annotation /// 0050798 // activated T cell proliferation // not recorded /// 0060004 // reflex // inferred from electronic annotation /// 0060004 // reflex // not recorded 0000785 // chromatin // inferred from electronic annotation /// 0000785 // chromatin // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005720 // nuclear heterochromatin // inferred from electronic annotation /// 0005720 // nuclear heterochromatin // not recorded /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1378630_at BF403678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403678 /DB_XREF=gi:11391653 /DB_XREF=UI-R-CA1-bix-h-12-0-UI.s1 /CLONE=UI-R-CA1-bix-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.60938.1 /TIER=ConsEnd /STK=3 /UG=Rn.60938 /UG_TITLE=ESTs BF403678 1378631_at BM388084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388084 /DB_XREF=gi:18188137 /DB_XREF=UI-R-DM1-cjz-d-13-0-UI.s1 /CLONE=UI-R-DM1-cjz-d-13-0-UI /FEA=EST /CNT=3 /TID=Rn.28568.1 /TIER=ConsEnd /STK=3 /UG=Rn.28568 /UG_TITLE=ESTs BM388084 1378632_at BI274561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274561 /DB_XREF=gi:14885579 /DB_XREF=UI-R-CW0-bwl-c-08-0-UI.s1 /CLONE=UI-R-CW0-bwl-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.27734.1 /TIER=ConsEnd /STK=3 /UG=Rn.27734 /UG_TITLE=ESTs BI274561 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 Ppfia4 140592 NM_080409 0005737 // cytoplasm // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation 0005515 // protein binding // not recorded 1378633_at BE106297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106297 /DB_XREF=gi:8498399 /DB_XREF=UI-R-BO1-asm-c-10-0-UI.s1 /CLONE=UI-R-BO1-asm-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.29200.1 /TIER=ConsEnd /STK=3 /UG=Rn.29200 /UG_TITLE=ESTs, Weakly similar to LIM DOMAIN KINASE 1 (R.norvegicus) BE106297 leupaxin Lpxn 293783 NM_001009649 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0008454 // alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378634_at BE117008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117008 /DB_XREF=gi:8509113 /DB_XREF=UI-R-BS1-ayl-g-06-0-UI.s1 /CLONE=UI-R-BS1-ayl-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.52773.1 /TIER=ConsEnd /STK=3 /UG=Rn.52773 /UG_TITLE=ESTs BE117008 histone deacetylase 8 Hdac8 363481 NM_001126373 0006350 // transcription // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016575 // histone deacetylation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004407 // histone deacetylase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378635_at BI275013 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275013 /DB_XREF=gi:14886465 /DB_XREF=UI-R-CX0-bwt-f-07-0-UI.s1 /CLONE=UI-R-CX0-bwt-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.53339.1 /TIER=ConsEnd /STK=3 /UG=Rn.53339 /UG_TITLE=ESTs BI275013 1378636_at BE116139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116139 /DB_XREF=gi:8508244 /DB_XREF=UI-R-BS1-axz-h-05-0-UI.s1 /CLONE=UI-R-BS1-axz-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.62459.1 /TIER=ConsEnd /STK=3 /UG=Rn.62459 /UG_TITLE=ESTs BE116139 rCG37275-like LOC100359642 100359642 XM_002729230 1378637_at BG374464 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374464 /DB_XREF=gi:13298936 /DB_XREF=UI-R-CV1-bsp-f-12-0-UI.s1 /CLONE=UI-R-CV1-bsp-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.15078.1 /TIER=ConsEnd /STK=3 /UG=Rn.15078 /UG_TITLE=ESTs BG374464 nuclear transcription factor, X-box binding 1 Nfx1 313166 NM_001024784 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045347 // negative regulation of MHC class II biosynthetic process // not recorded 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378638_a_at BM384709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384709 /DB_XREF=gi:18184762 /DB_XREF=UI-R-CN1-cjl-d-03-0-UI.s2 /CLONE=UI-R-CN1-cjl-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.41565.1 /TIER=ConsEnd /STK=3 /UG=Rn.41565 /UG_TITLE=ESTs, Highly similar to CLC3 RAT CHLORIDE CHANNEL PROTEIN 3 (R.norvegicus) BM384709 similar to 2700029M09Rik protein RGD1311747 290706 NM_001169105 0005634 // nucleus // not recorded 1378639_at BM389576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389576 /DB_XREF=gi:18189629 /DB_XREF=UI-R-CN1-cjn-l-18-0-UI.s1 /CLONE=UI-R-CN1-cjn-l-18-0-UI /FEA=EST /CNT=3 /TID=Rn.46302.1 /TIER=ConsEnd /STK=3 /UG=Rn.46302 /UG_TITLE=ESTs, Weakly similar to T32263 hypothetical protein F23F1.5 - Caenorhabditis elegans (C.elegans) BM389576 snurportin 1 Snupn 316108 NM_001004270 0000387 // spliceosomal snRNP assembly // not recorded /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // traceable author statement /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005846 // nuclear cap binding complex // traceable author statement 0000339 // RNA cap binding // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 1378640_at BE098732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098732 /DB_XREF=gi:8490600 /DB_XREF=UI-R-BJ1-atd-c-08-0-UI.s1 /CLONE=UI-R-BJ1-atd-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.9046.1 /TIER=ConsEnd /STK=3 /UG=Rn.9046 /UG_TITLE=ESTs BE098732 ubiquitin-like with PHD and ring finger domains 1 Uhrf1 316129 NM_001008882 0006281 // DNA repair // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0000792 // heterochromatin // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378641_at AI145585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145585 /DB_XREF=gi:3667384 /DB_XREF=UI-R-BT0-qi-h-04-0-UI.s1 /CLONE=UI-R-BT0-qi-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.17011.1 /TIER=ConsEnd /STK=3 /UG=Rn.17011 /UG_TITLE=ESTs AI145585 1378642_at AI112858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112858 /DB_XREF=gi:3512807 /DB_XREF=UI-R-E1-fs-d-01-0-UI.s1 /CLONE=UI-R-E1-fs-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.23999.1 /TIER=ConsEnd /STK=3 /UG=Rn.23999 /UG_TITLE=ESTs AI112858 similar to uncharacterized hypothalamus protein HT013 RGD1307071 311502 XM_001055449 /// XM_230657 0007051 // spindle organization // not recorded 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // not recorded 0005515 // protein binding // not recorded /// 0019901 // protein kinase binding // not recorded 1378643_at AI600226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600226 /DB_XREF=gi:4609274 /DB_XREF=EST251929 /CLONE=REMED82 /FEA=EST /CNT=3 /TID=Rn.36195.1 /TIER=ConsEnd /STK=3 /UG=Rn.36195 /UG_TITLE=ESTs AI600226 1378644_at BI301465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301465 /DB_XREF=gi:14977745 /DB_XREF=UI-R-DN0-cit-e-23-0-UI.s1 /CLONE=UI-R-DN0-cit-e-23-0-UI /FEA=EST /CNT=3 /TID=Rn.73907.1 /TIER=ConsEnd /STK=3 /UG=Rn.73907 /UG_TITLE=ESTs BI301465 1378645_at AW524543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524543 /DB_XREF=gi:7166928 /DB_XREF=UI-R-BO0-ahz-f-07-0-UI.s1 /CLONE=UI-R-BO0-ahz-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.27520.1 /TIER=ConsEnd /STK=3 /UG=Rn.27520 /UG_TITLE=ESTs AW524543 1378646_at AW525661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525661 /DB_XREF=gi:7168046 /DB_XREF=UI-R-BJ0p-aiu-d-01-0-UI.s1 /CLONE=UI-R-BJ0p-aiu-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.46001.1 /TIER=ConsEnd /STK=3 /UG=Rn.46001 /UG_TITLE=ESTs AW525661 YTH domain family, member 3 Ythdf3 361920 NM_001108546 1378647_at AI235274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235274 /DB_XREF=gi:3828780 /DB_XREF=EST231836 /CLONE=ROVCP69 /FEA=EST /CNT=3 /TID=Rn.53906.1 /TIER=ConsEnd /STK=3 /UG=Rn.53906 /UG_TITLE=ESTs AI235274 similar to C11orf17 protein RGD1306959 361624 NM_001108497 0005515 // protein binding // not recorded 1378648_at BF404852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404852 /DB_XREF=gi:11392827 /DB_XREF=UI-R-CA1-bic-d-12-0-UI.s1 /CLONE=UI-R-CA1-bic-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.59444.1 /TIER=ConsEnd /STK=3 /UG=Rn.59444 /UG_TITLE=ESTs, Weakly similar to HEPS RAT SERINE PROTEASE HEPSIN (R.norvegicus) BF404852 1378649_at AA800285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800285 /DB_XREF=gi:2863240 /DB_XREF=EST189782 /CLONE=RHEAN40 /FEA=EST /CNT=3 /TID=Rn.6308.1 /TIER=ConsEnd /STK=3 /UG=Rn.6308 /UG_TITLE=ESTs AA800285 1378650_at BF396329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396329 /DB_XREF=gi:11381301 /DB_XREF=UI-R-BS2-bdw-h-05-0-UI.s1 /CLONE=UI-R-BS2-bdw-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.71208.1 /TIER=ConsEnd /STK=3 /UG=Rn.71208 /UG_TITLE=ESTs, Weakly similar to TC17 RAT TRANSCRIPTION FACTOR 17 (R.norvegicus) BF396329 zinc finger protein 61 Zfp61 499094 NM_001017512 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378651_at BF403339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403339 /DB_XREF=gi:11391314 /DB_XREF=UI-R-CA1-biy-g-22-0-UI.s1 /CLONE=UI-R-CA1-biy-g-22-0-UI /FEA=EST /CNT=3 /TID=Rn.51947.1 /TIER=ConsEnd /STK=3 /UG=Rn.51947 /UG_TITLE=ESTs BF403339 1378652_at BE111540 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111540 /DB_XREF=gi:8503645 /DB_XREF=UI-R-BJ1-avc-a-04-0-UI.s1 /CLONE=UI-R-BJ1-avc-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.52308.1 /TIER=ConsEnd /STK=3 /UG=Rn.52308 /UG_TITLE=ESTs BE111540 1378653_at BE110608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110608 /DB_XREF=gi:8502713 /DB_XREF=UI-R-BJ1-avu-a-01-0-UI.s1 /CLONE=UI-R-BJ1-avu-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.35982.1 /TIER=ConsEnd /STK=3 /UG=Rn.35982 /UG_TITLE=ESTs BE110608 1378654_at BE107231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107231 /DB_XREF=gi:8499336 /DB_XREF=UI-R-BS1-ayr-d-08-0-UI.s1 /CLONE=UI-R-BS1-ayr-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.48873.1 /TIER=ConsEnd /STK=3 /UG=Rn.48873 /UG_TITLE=ESTs BE107231 1378655_at BF399516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399516 /DB_XREF=gi:11384524 /DB_XREF=UI-R-CA1-bjb-h-10-0-UI.s1 /CLONE=UI-R-CA1-bjb-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.59396.1 /TIER=ConsEnd /STK=3 /UG=Rn.59396 /UG_TITLE=ESTs BF399516 1378656_at BE105572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105572 /DB_XREF=gi:8497674 /DB_XREF=UI-R-BX0-ash-d-05-0-UI.s1 /CLONE=UI-R-BX0-ash-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.45505.1 /TIER=ConsEnd /STK=3 /UG=Rn.45505 /UG_TITLE=ESTs, Weakly similar to S43569 R01H10.6 protein - Caenorhabditis elegans (C.elegans) BE105572 Bardet-Biedl syndrome 5 Bbs5 362142 NM_001108583 0042384 // cilium assembly // not recorded 0005622 // intracellular // not recorded /// 0005932 // microtubule basal body // not recorded /// 0005932 // microtubule basal body // inferred from electronic annotation /// 0034464 // BBSome // not recorded 0032266 // phosphatidylinositol-3-phosphate binding // not recorded 1378657_at BF404012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404012 /DB_XREF=gi:11391987 /DB_XREF=UI-R-CA1-bjd-g-14-0-UI.s1 /CLONE=UI-R-CA1-bjd-g-14-0-UI /FEA=EST /CNT=3 /TID=Rn.57849.1 /TIER=ConsEnd /STK=3 /UG=Rn.57849 /UG_TITLE=ESTs BF404012 1378658_at BI292185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292185 /DB_XREF=gi:14952441 /DB_XREF=UI-R-DN0-civ-g-09-0-UI.s1 /CLONE=UI-R-DN0-civ-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.44141.1 /TIER=ConsEnd /STK=3 /UG=Rn.44141 /UG_TITLE=ESTs, Weakly similar to JG0168 gob-5 protein - mouse (M.musculus) BI292185 chloride channel accessory 4 Clca4 362053 NM_201419 0006821 // chloride transport // not recorded /// 0034220 // ion transmembrane transport // not recorded 0005886 // plasma membrane // not recorded 0005254 // chloride channel activity // not recorded /// 0015276 // ligand-gated ion channel activity // not recorded 1378659_at BF413058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413058 /DB_XREF=gi:11401010 /DB_XREF=UI-R-BT1-bnv-f-10-0-UI.s1 /CLONE=UI-R-BT1-bnv-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.62224.1 /TIER=ConsEnd /STK=3 /UG=Rn.62224 /UG_TITLE=ESTs BF413058 1378660_at BF388630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388630 /DB_XREF=gi:11373454 /DB_XREF=UI-R-BS2-bdd-g-01-0-UI.s1 /CLONE=UI-R-BS2-bdd-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.64377.1 /TIER=ConsEnd /STK=3 /UG=Rn.64377 /UG_TITLE=ESTs, Weakly similar to AT motif-binding factor (M.musculus) BF388630 zinc finger homeobox 4 Zfhx4 310250 NM_001191702 /// XM_001058915 /// XM_226964 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1378661_x_at BM389983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389983 /DB_XREF=gi:18190036 /DB_XREF=UI-R-CN1-cjo-g-12-0-UI.s1 /CLONE=UI-R-CN1-cjo-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.20441.1 /TIER=ConsEnd /STK=3 /UG=Rn.20441 /UG_TITLE=ESTs BM389983 hypothetical protein LOC100361900 LOC100361900 100361900 XM_002729073 1378662_at BF415816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415816 /DB_XREF=gi:11403805 /DB_XREF=UI-R-CA1-bkf-c-05-0-UI.s1 /CLONE=UI-R-CA1-bkf-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.62825.1 /TIER=ConsEnd /STK=3 /UG=Rn.62825 /UG_TITLE=ESTs BF415816 1378663_at BF401737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401737 /DB_XREF=gi:11389712 /DB_XREF=UI-R-CA0-bgo-a-09-0-UI.s1 /CLONE=UI-R-CA0-bgo-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.59864.1 /TIER=ConsEnd /STK=3 /UG=Rn.59864 /UG_TITLE=ESTs BF401737 1378664_at BF416541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416541 /DB_XREF=gi:11404530 /DB_XREF=UI-R-CA0-bkk-h-03-0-UI.s1 /CLONE=UI-R-CA0-bkk-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.61695.1 /TIER=ConsEnd /STK=3 /UG=Rn.61695 /UG_TITLE=ESTs BF416541 translin-associated factor X interacting protein 1 Tsnaxip1 498944 NM_001109130 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded 1378665_at BF415436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415436 /DB_XREF=gi:11403460 /DB_XREF=UI-R-CA1-bjz-c-06-0-UI.s1 /CLONE=UI-R-CA1-bjz-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.53777.1 /TIER=ConsEnd /STK=3 /UG=Rn.53777 /UG_TITLE=ESTs BF415436 1378666_at BE108537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108537 /DB_XREF=gi:8500642 /DB_XREF=UI-R-CA0-axf-d-08-0-UI.s1 /CLONE=UI-R-CA0-axf-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.26556.1 /TIER=ConsEnd /STK=3 /UG=Rn.26556 /UG_TITLE=ESTs, Weakly similar to N-CHIMAERIN (R.norvegicus) BE108537 Rho GTPase activating protein 21 Arhgap21 307178 NM_001191693 /// XM_001074395 /// XM_225628 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378667_at BF411828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411828 /DB_XREF=gi:11399817 /DB_XREF=UI-R-BT1-bmw-g-05-0-UI.s1 /CLONE=UI-R-BT1-bmw-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.61937.1 /TIER=ConsEnd /STK=3 /UG=Rn.61937 /UG_TITLE=ESTs BF411828 1378668_at BG672426 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672426 /DB_XREF=gi:13894525 /DB_XREF=DRNCIC01 /CLONE=DRNCIC01 /FEA=EST /CNT=3 /TID=Rn.6447.1 /TIER=ConsEnd /STK=3 /UG=Rn.6447 /UG_TITLE=ESTs BG672426 1378669_at AI706871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI706871 /DB_XREF=gi:4994771 /DB_XREF=UI-R-AA1-aac-d-01-0-UI.s1 /CLONE=UI-R-AA1-aac-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.41582.1 /TIER=ConsEnd /STK=3 /UG=Rn.41582 /UG_TITLE=ESTs, Weakly similar to A55817 cyclin-dependent kinase p130-PITSLRE - mouse (M.musculus) AI706871 inner centromere protein Incenp 293733 NM_001106335 0000910 // cytokinesis // not recorded /// 0007059 // chromosome segregation // not recorded 0000775 // chromosome, centromeric region // not recorded /// 0000776 // kinetochore // not recorded /// 0000795 // synaptonemal complex // not recorded /// 0000801 // central element // not recorded /// 0005721 // centromeric heterochromatin // not recorded /// 0005819 // spindle // not recorded /// 0030496 // midbody // not recorded /// 0043234 // protein complex // not recorded 0005515 // protein binding // not recorded 1378670_at AW526307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526307 /DB_XREF=gi:7168692 /DB_XREF=UI-R-BO1-aja-e-05-0-UI.s1 /CLONE=UI-R-BO1-aja-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.45078.1 /TIER=ConsEnd /STK=3 /UG=Rn.45078 /UG_TITLE=ESTs AW526307 1378671_at BF391144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391144 /DB_XREF=gi:11375991 /DB_XREF=UI-R-CA1-bcd-g-05-0-UI.s1 /CLONE=UI-R-CA1-bcd-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.57407.1 /TIER=ConsEnd /STK=3 /UG=Rn.57407 /UG_TITLE=ESTs BF391144 1378672_at BG381207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381207 /DB_XREF=gi:13305679 /DB_XREF=UI-R-CT0-buh-e-03-0-UI.s1 /CLONE=UI-R-CT0-buh-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.20628.1 /TIER=ConsEnd /STK=3 /UG=Rn.20628 /UG_TITLE=ESTs BG381207 1378673_at AI071509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071509 /DB_XREF=gi:3397724 /DB_XREF=UI-R-C2-nc-g-05-0-UI.s1 /CLONE=UI-R-C2-nc-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.21948.1 /TIER=ConsEnd /STK=3 /UG=Rn.21948 /UG_TITLE=ESTs AI071509 1378674_at BI293056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293056 /DB_XREF=gi:14954185 /DB_XREF=UI-R-DK0-cdj-h-02-0-UI.s1 /CLONE=UI-R-DK0-cdj-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.45491.1 /TIER=ConsEnd /STK=3 /UG=Rn.45491 /UG_TITLE=ESTs, Highly similar to HOMEOBOX PROTEIN ENGRAILED-2 (M.musculus) BI293056 engrailed homeobox 2 En2 499964 NM_001109214 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0030901 // midbrain development // not recorded /// 0030902 // hindbrain development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048666 // neuron development // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1378675_at BE119678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119678 /DB_XREF=gi:8511783 /DB_XREF=UI-R-CA0-baz-f-09-0-UI.s1 /CLONE=UI-R-CA0-baz-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.53317.1 /TIER=ConsEnd /STK=3 /UG=Rn.53317 /UG_TITLE=ESTs BE119678 transglutaminase 3, E polypeptide Tgm3 366189 NM_001108959 0018149 // peptide cross-linking // inferred from electronic annotation /// 0018149 // peptide cross-linking // not recorded /// 0030216 // keratinocyte differentiation // not recorded /// 0043163 // cell envelope organization // not recorded /// 0051262 // protein tetramerization // not recorded 0005737 // cytoplasm // not recorded /// 0031234 // extrinsic to internal side of plasma membrane // not recorded 0000287 // magnesium ion binding // not recorded /// 0003810 // protein-glutamine gamma-glutamyltransferase activity // inferred from electronic annotation /// 0003810 // protein-glutamine gamma-glutamyltransferase activity // not recorded /// 0003824 // catalytic activity // not recorded /// 0003924 // GTPase activity // not recorded /// 0005509 // calcium ion binding // not recorded /// 0005525 // GTP binding // not recorded /// 0019003 // GDP binding // not recorded 1378676_at BF406322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406322 /DB_XREF=gi:11394297 /DB_XREF=UI-R-CA1-bjf-j-17-0-UI.s1 /CLONE=UI-R-CA1-bjf-j-17-0-UI /FEA=EST /CNT=3 /TID=Rn.57958.1 /TIER=ConsEnd /STK=3 /UG=Rn.57958 /UG_TITLE=ESTs, Moderately similar to LMA3 MOUSE LAMININ ALPHA-3 CHAIN PRECURSOR (M.musculus) BF406322 1378677_at BF394318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394318 /DB_XREF=gi:11379182 /DB_XREF=UI-R-CA0-bgr-e-06-0-UI.s1 /CLONE=UI-R-CA0-bgr-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.62131.1 /TIER=ConsEnd /STK=3 /UG=Rn.62131 /UG_TITLE=ESTs BF394318 1378678_at BF417886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417886 /DB_XREF=gi:11405875 /DB_XREF=UI-R-CA1-blu-e-01-0-UI.s1 /CLONE=UI-R-CA1-blu-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.63273.1 /TIER=ConsEnd /STK=3 /UG=Rn.63273 /UG_TITLE=ESTs BF417886 1378679_at BG372484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372484 /DB_XREF=gi:13269021 /DB_XREF=UI-R-CV0-brq-e-06-0-UI.s1 /CLONE=UI-R-CV0-brq-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.26727.1 /TIER=ConsEnd /STK=3 /UG=Rn.26727 /UG_TITLE=ESTs BG372484 ubiquitin specific peptidase 25 Usp25 304150 NM_001107114 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1378680_at BI296059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296059 /DB_XREF=gi:14960123 /DB_XREF=UI-R-DK0-cfd-h-04-0-UI.s1 /CLONE=UI-R-DK0-cfd-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.38387.1 /TIER=ConsEnd /STK=3 /UG=Rn.38387 /UG_TITLE=ESTs, Weakly similar to RGSC_HUMAN REGULATOR OF G-PROTEIN SIGNALING 12 (H.sapiens) BI296059 1378681_at BF413190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413190 /DB_XREF=gi:11401179 /DB_XREF=UI-R-BT1-bnx-g-07-0-UI.s1 /CLONE=UI-R-BT1-bnx-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.45550.1 /TIER=ConsEnd /STK=3 /UG=Rn.45550 /UG_TITLE=ESTs BF413190 1378682_at BF390772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390772 /DB_XREF=gi:11375619 /DB_XREF=UI-R-CA1-bcp-c-08-0-UI.s1 /CLONE=UI-R-CA1-bcp-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.53821.1 /TIER=ConsEnd /STK=3 /UG=Rn.53821 /UG_TITLE=ESTs BF390772 1378683_at BF413105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413105 /DB_XREF=gi:11401094 /DB_XREF=UI-R-CA0-bod-g-02-0-UI.s1 /CLONE=UI-R-CA0-bod-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.49534.1 /TIER=ConsEnd /STK=3 /UG=Rn.49534 /UG_TITLE=ESTs BF413105 1378684_at BG375958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375958 /DB_XREF=gi:13300430 /DB_XREF=UI-R-CU0-bur-f-06-0-UI.s1 /CLONE=UI-R-CU0-bur-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.66462.1 /TIER=ConsEnd /STK=3 /UG=Rn.66462 /UG_TITLE=ESTs, Weakly similar to Ras-related associated with diabetes (Rattus norvegicus) (R.norvegicus) BG375958 RAS (RAD and GEM)-like GTP-binding 1 Rem1 366232 NM_001025753 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1378685_at AI235586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235586 /DB_XREF=gi:3829092 /DB_XREF=EST232148 /CLONE=ROVCT81 /FEA=EST /CNT=3 /TID=Rn.25340.1 /TIER=ConsEnd /STK=3 /UG=Rn.25340 /UG_TITLE=ESTs AI235586 Hypothetical protein LOC689836 LOC689836 689836 XM_001072209 1378686_at BF405626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405626 /DB_XREF=gi:11393601 /DB_XREF=UI-R-CA1-bix-o-02-0-UI.s1 /CLONE=UI-R-CA1-bix-o-02-0-UI /FEA=EST /CNT=3 /TID=Rn.60190.1 /TIER=ConsEnd /STK=3 /UG=Rn.60190 /UG_TITLE=ESTs BF405626 1378687_at BF393824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393824 /DB_XREF=gi:11378687 /DB_XREF=UI-R-CA0-bgv-d-05-0-UI.s1 /CLONE=UI-R-CA0-bgv-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.75527.1 /TIER=ConsEnd /STK=3 /UG=Rn.75527 /UG_TITLE=ESTs BF393824 1378688_at AW253035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253035 /DB_XREF=gi:6596626 /DB_XREF=UI-R-BJ0-aeq-f-04-0-UI.s1 /CLONE=UI-R-BJ0-aeq-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.40812.1 /TIER=ConsEnd /STK=3 /UG=Rn.40812 /UG_TITLE=ESTs AW253035 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation 1378689_at BF409044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409044 /DB_XREF=gi:11397019 /DB_XREF=UI-R-BT1-bkl-d-02-0-UI.s1 /CLONE=UI-R-BT1-bkl-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.53277.1 /TIER=ConsEnd /STK=3 /UG=Rn.53277 /UG_TITLE=ESTs BF409044 1378690_at BI291986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291986 /DB_XREF=gi:14952044 /DB_XREF=UI-R-DN0-civ-l-11-0-UI.s1 /CLONE=UI-R-DN0-civ-l-11-0-UI /FEA=EST /CNT=3 /TID=Rn.79295.1 /TIER=ConsEnd /STK=3 /UG=Rn.79295 /UG_TITLE=ESTs, Highly similar to A45835 Ly6 homolog RK10 precursor - rat (R.norvegicus) BI291986 lymphocyte antigen 6 complex, locus A-like Ly6al 362935 NM_001128099 1378691_at AA893871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893871 /DB_XREF=gi:3020750 /DB_XREF=EST197674 /CLONE=RPLAM87 /FEA=EST /CNT=3 /TID=Rn.8155.1 /TIER=ConsEnd /STK=3 /UG=Rn.8155 /UG_TITLE=ESTs AA893871 1378692_at BF564165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564165 /DB_XREF=gi:11673895 /DB_XREF=UI-R-C4-ali-e-04-0-UI.r1 /CLONE=UI-R-C4-ali-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.47884.1 /TIER=ConsEnd /STK=3 /UG=Rn.47884 /UG_TITLE=ESTs BF564165 paired box 8 Pax8 81819 NM_031141 0001656 // metanephros development // inferred from electronic annotation /// 0001656 // metanephros development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030878 // thyroid gland development // inferred from electronic annotation /// 0030878 // thyroid gland development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from mutant phenotype /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay 1378693_at BF394159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394159 /DB_XREF=gi:11379023 /DB_XREF=UI-R-CA0-bha-f-02-0-UI.s1 /CLONE=UI-R-CA0-bha-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.50240.1 /TIER=ConsEnd /STK=3 /UG=Rn.50240 /UG_TITLE=ESTs, Weakly similar to SHC MOUSE SHC TRANSFORMING PROTEIN (M.musculus) BF394159 SHC (Src homology 2 domain containing) transforming protein 2 Shc2 314612 NM_001108065 0007265 // Ras protein signal transduction // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1378694_at BI294858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294858 /DB_XREF=gi:14957722 /DB_XREF=UI-R-DK0-ced-a-01-0-UI.s1 /CLONE=UI-R-DK0-ced-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.51818.1 /TIER=ConsEnd /STK=3 /UG=Rn.51818 /UG_TITLE=ESTs BI294858 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation 1378695_at AI007942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI007942 /DB_XREF=gi:3221774 /DB_XREF=EST202393 /CLONE=RBRAZ46 /FEA=EST /CNT=3 /TID=Rn.13760.1 /TIER=ConsEnd /STK=3 /UG=Rn.13760 /UG_TITLE=ESTs AI007942 1378696_at BF409584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409584 /DB_XREF=gi:11397559 /DB_XREF=UI-R-CA1-blm-b-01-0-UI.s1 /CLONE=UI-R-CA1-blm-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.61407.1 /TIER=ConsEnd /STK=3 /UG=Rn.61407 /UG_TITLE=ESTs BF409584 1378697_at BI300550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300550 /DB_XREF=gi:14976830 /DB_XREF=UI-R-CV2-cim-c-09-0-UI.s1 /CLONE=UI-R-CV2-cim-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.73237.1 /TIER=ConsEnd /STK=3 /UG=Rn.73237 /UG_TITLE=ESTs BI300550 RNA binding motif, single stranded interacting protein 2 Rbms2 288771 NM_001025403 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1378698_at AI555163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555163 /DB_XREF=gi:4487526 /DB_XREF=UI-R-C2p-qt-e-07-0-UI.s1 /CLONE=UI-R-C2p-qt-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.13817.1 /TIER=ConsEnd /STK=3 /UG=Rn.13817 /UG_TITLE=ESTs AI555163 1378699_at AI176379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176379 /DB_XREF=gi:3727017 /DB_XREF=EST219963 /CLONE=ROVBR07 /FEA=EST /CNT=3 /TID=Rn.18565.1 /TIER=ConsEnd /STK=3 /UG=Rn.18565 /UG_TITLE=ESTs, Weakly similar to T43498 hypothetical protein DKFZp586C1021.1 (H.sapiens) AI176379 polycystic kidney and hepatic disease 1-like 1 Pkhd1l1 314917 NM_001034931 1378700_at BF403674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403674 /DB_XREF=gi:11391649 /DB_XREF=UI-R-CA1-bix-h-02-0-UI.s1 /CLONE=UI-R-CA1-bix-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.20645.1 /TIER=ConsEnd /STK=3 /UG=Rn.20645 /UG_TITLE=ESTs BF403674 1378701_at BF401392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401392 /DB_XREF=gi:11389367 /DB_XREF=UI-R-CA0-bgt-b-04-0-UI.s1 /CLONE=UI-R-CA0-bgt-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.59798.1 /TIER=ConsEnd /STK=3 /UG=Rn.59798 /UG_TITLE=ESTs BF401392 1378702_at BF413730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413730 /DB_XREF=gi:11401719 /DB_XREF=UI-R-CA0-boh-h-02-0-UI.s1 /CLONE=UI-R-CA0-boh-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.62443.1 /TIER=ConsEnd /STK=3 /UG=Rn.62443 /UG_TITLE=ESTs BF413730 1378703_at BF396390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396390 /DB_XREF=gi:11381362 /DB_XREF=UI-R-BS2-bdx-e-11-0-UI.s1 /CLONE=UI-R-BS2-bdx-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.58596.1 /TIER=ConsEnd /STK=3 /UG=Rn.58596 /UG_TITLE=ESTs BF396390 1378704_at AI406658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406658 /DB_XREF=gi:4250162 /DB_XREF=EST234945 /CLONE=ROVDV30 /FEA=EST /CNT=3 /TID=Rn.43943.1 /TIER=ConsEnd /STK=3 /UG=Rn.43943 /UG_TITLE=ESTs AI406658 1378705_at AW254450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254450 /DB_XREF=gi:6598041 /DB_XREF=UI-R-BJ0-adr-b-12-0-UI.s1 /CLONE=UI-R-BJ0-adr-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.44705.1 /TIER=ConsEnd /STK=3 /UG=Rn.44705 /UG_TITLE=ESTs AW254450 SET domain containing 5 Setd5 297514 NM_001106614 1378706_at BE101875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101875 /DB_XREF=gi:8494015 /DB_XREF=UI-R-BT1-aqi-a-03-0-UI.s1 /CLONE=UI-R-BT1-aqi-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.50157.1 /TIER=ConsEnd /STK=3 /UG=Rn.50157 /UG_TITLE=ESTs BE101875 1378707_at BF402833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402833 /DB_XREF=gi:11390808 /DB_XREF=UI-R-CA0-bhh-h-01-0-UI.s1 /CLONE=UI-R-CA0-bhh-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.60140.1 /TIER=ConsEnd /STK=3 /UG=Rn.60140 /UG_TITLE=ESTs BF402833 1378708_at BF412808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412808 /DB_XREF=gi:11400797 /DB_XREF=UI-R-BT1-bnz-f-07-0-UI.s1 /CLONE=UI-R-BT1-bnz-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.62282.1 /TIER=ConsEnd /STK=3 /UG=Rn.62282 /UG_TITLE=ESTs BF412808 Myotubularin related protein 1 Mtmr1 317296 NM_001191725 /// XM_001059230 /// XM_228644 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded 0004438 // phosphatidylinositol-3-phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1378709_at BI300330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300330 /DB_XREF=gi:14976610 /DB_XREF=UI-R-CV2-cid-g-01-0-UI.s1 /CLONE=UI-R-CV2-cid-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.67033.1 /TIER=ConsEnd /STK=3 /UG=Rn.67033 /UG_TITLE=ESTs BI300330 1378710_at BF389503 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389503 /DB_XREF=gi:11374338 /DB_XREF=UI-R-CJ0-bfc-e-05-0-UI.s1 /CLONE=UI-R-CJ0-bfc-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.16383.1 /TIER=ConsEnd /STK=3 /UG=Rn.16383 /UG_TITLE=ESTs BF389503 coiled-coil domain containing 67 Ccdc67 315438 NM_001014087 1378711_x_at BF414888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414888 /DB_XREF=gi:11402877 /DB_XREF=UI-R-BJ2-bot-c-04-0-UI.s1 /CLONE=UI-R-BJ2-bot-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.47754.1 /TIER=ConsEnd /STK=3 /UG=Rn.47754 /UG_TITLE=ESTs BF414888 1378712_at BM382822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM382822 /DB_XREF=gi:18182875 /DB_XREF=UI-R-BT1-bko-b-02-0-UI.s1 /CLONE=UI-R-BT1-bko-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.59765.1 /TIER=ConsEnd /STK=3 /UG=Rn.59765 /UG_TITLE=ESTs, Highly similar to I48950 telencephalin precursor - mouse (M.musculus) BM382822 intercellular adhesion molecule 5, telencephalin Icam5 313785 NM_001172079 /// XM_001077293 /// XM_233737 0006909 // phagocytosis // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1378713_at BF406829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406829 /DB_XREF=gi:11394804 /DB_XREF=UI-R-BJ2-bpp-f-01-0-UI.s1 /CLONE=UI-R-BJ2-bpp-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.64463.1 /TIER=ConsEnd /STK=3 /UG=Rn.64463 /UG_TITLE=ESTs BF406829 1378714_at BI288367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288367 /DB_XREF=gi:14944885 /DB_XREF=UI-R-DK0-cda-b-02-0-UI.s1 /CLONE=UI-R-DK0-cda-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.45933.1 /TIER=ConsEnd /STK=3 /UG=Rn.45933 /UG_TITLE=ESTs BI288367 Similar to hypothetical protein BC010003 RGD1309873 363112 NM_001108774 1378715_at BE114254 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114254 /DB_XREF=gi:8506359 /DB_XREF=UI-R-BJ1-awk-a-11-0-UI.s1 /CLONE=UI-R-BJ1-awk-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.50798.1 /TIER=ConsEnd /STK=3 /UG=Rn.50798 /UG_TITLE=ESTs BE114254 1378716_at BF409446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409446 /DB_XREF=gi:11397385 /DB_XREF=UI-R-CA1-blf-g-02-0-UI.s1 /CLONE=UI-R-CA1-blf-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.56672.1 /TIER=ConsEnd /STK=3 /UG=Rn.56672 /UG_TITLE=ESTs BF409446 1378717_at BF390952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390952 /DB_XREF=gi:11375799 /DB_XREF=UI-R-CA1-bce-d-12-0-UI.s1 /CLONE=UI-R-CA1-bce-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.57341.1 /TIER=ConsEnd /STK=3 /UG=Rn.57341 /UG_TITLE=ESTs BF390952 1378718_at BF399782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399782 /DB_XREF=gi:11384792 /DB_XREF=UI-R-CA0-bhy-e-09-0-UI.s2 /CLONE=UI-R-CA0-bhy-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.60005.1 /TIER=ConsEnd /STK=3 /UG=Rn.60005 /UG_TITLE=ESTs BF399782 1378719_at BF411797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411797 /DB_XREF=gi:11399786 /DB_XREF=UI-R-BT1-bmw-c-11-0-UI.s1 /CLONE=UI-R-BT1-bmw-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.61924.1 /TIER=ConsEnd /STK=3 /UG=Rn.61924 /UG_TITLE=ESTs BF411797 1378720_at BF397780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397780 /DB_XREF=gi:11382764 /DB_XREF=UI-R-BS2-bee-e-11-0-UI.s1 /CLONE=UI-R-BS2-bee-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.14833.1 /TIER=ConsEnd /STK=3 /UG=Rn.14833 /UG_TITLE=ESTs, Highly similar to GLI1_MOUSE ZINC FINGER PROTEIN GLI1 (GLIOMA-ASSOCIATED ONCOGENE HOMOLOG) (M.musculus) BF397780 GLI family zinc finger 1 Gli1 140589 NM_001191910 /// XM_001056128 /// XM_002726951 /// XM_002729800 /// XM_345832 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0007224 // smoothened signaling pathway // not recorded /// 0007224 // smoothened signaling pathway // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007418 // ventral midline development // inferred from electronic annotation /// 0007418 // ventral midline development // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0009913 // epidermal cell differentiation // inferred from electronic annotation /// 0009913 // epidermal cell differentiation // not recorded /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0009954 // proximal/distal pattern formation // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // not recorded /// 0021696 // cerebellar cortex morphogenesis // inferred from electronic annotation /// 0021696 // cerebellar cortex morphogenesis // not recorded /// 0021938 // smoothened signaling pathway involved in regulation of granule cell precursor cell proliferation // inferred from electronic annotation /// 0021938 // smoothened signaling pathway involved in regulation of granule cell precursor cell proliferation // not recorded /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0021983 // pituitary gland development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060032 // notochord regression // inferred from electronic annotation /// 0060032 // notochord regression // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005929 // cilium // inferred from electronic annotation /// 0005929 // cilium // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded 1378721_at AI547942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547942 /DB_XREF=gi:4465430 /DB_XREF=UI-R-C3-tb-d-08-0-UI.s1 /CLONE=UI-R-C3-tb-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.44970.1 /TIER=ConsEnd /STK=3 /UG=Rn.44970 /UG_TITLE=ESTs AI547942 1378722_at BF393951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393951 /DB_XREF=gi:11378856 /DB_XREF=UI-R-CA0-bgx-f-01-0-UI.s1 /CLONE=UI-R-CA0-bgx-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.61313.1 /TIER=ConsEnd /STK=3 /UG=Rn.61313 /UG_TITLE=ESTs BF393951 1378723_at BF419153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419153 /DB_XREF=gi:11407183 /DB_XREF=UI-R-BJ2-bqo-f-12-0-UI.s1 /CLONE=UI-R-BJ2-bqo-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.23575.1 /TIER=ConsEnd /STK=3 /UG=Rn.23575 /UG_TITLE=ESTs BF419153 1378724_at BI291716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291716 /DB_XREF=gi:14951530 /DB_XREF=UI-R-DM0-cis-b-24-0-UI.s1 /CLONE=UI-R-DM0-cis-b-24-0-UI /FEA=EST /CNT=3 /TID=Rn.38632.1 /TIER=ConsEnd /STK=3 /UG=Rn.38632 /UG_TITLE=ESTs, Highly similar to S60561 I kappa B-like protein (H.sapiens) BI291716 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1 Nfkbil1 361794 NM_212509 0005515 // protein binding // not recorded 1378725_at BE105927 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105927 /DB_XREF=gi:8498029 /DB_XREF=UI-R-BO1-asj-g-12-0-UI.s1 /CLONE=UI-R-BO1-asj-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.49086.1 /TIER=ConsEnd /STK=3 /UG=Rn.49086 /UG_TITLE=ESTs BE105927 1378726_at AI556485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556485 /DB_XREF=gi:4488848 /DB_XREF=UI-R-C2p-rk-d-08-0-UI.s1 /CLONE=UI-R-C2p-rk-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.49882.1 /TIER=ConsEnd /STK=3 /UG=Rn.49882 /UG_TITLE=ESTs AI556485 alkB, alkylation repair homolog 4 (E. coli) Alkbh4 288587 NM_001105920 0055114 // oxidation reduction // inferred from electronic annotation 0010302 // 2-oxoglutarate-dependent dioxygenase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1378727_at BF400163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400163 /DB_XREF=gi:11385174 /DB_XREF=UI-R-CA1-bjc-g-06-0-UI.s1 /CLONE=UI-R-CA1-bjc-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.62472.1 /TIER=ConsEnd /STK=3 /UG=Rn.62472 /UG_TITLE=ESTs BF400163 1378728_at BF416155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416155 /DB_XREF=gi:11404144 /DB_XREF=UI-R-CA0-bkq-h-03-0-UI.s1 /CLONE=UI-R-CA0-bkq-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.62934.1 /TIER=ConsEnd /STK=3 /UG=Rn.62934 /UG_TITLE=ESTs, Weakly similar to PT0186 protein-tyrosine kinase (R.norvegicus) BF416155 Eph receptor A8 Epha8 60589 NM_001191870 /// XM_001069777 /// XM_342952 0006468 // protein phosphorylation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1378729_at AW251636 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251636 /DB_XREF=gi:6595227 /DB_XREF=UI-R-BJ0-adp-b-02-0-UI.s1 /CLONE=UI-R-BJ0-adp-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.40627.1 /TIER=ConsEnd /STK=3 /UG=Rn.40627 /UG_TITLE=ESTs AW251636 translocase of outer mitochondrial membrane 34 Tomm34 311621 NM_001044244 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // not recorded 1378730_at AW534183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534183 /DB_XREF=gi:7176597 /DB_XREF=UI-R-C4-alq-c-01-0-UI.s1 /CLONE=UI-R-C4-alq-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.50795.1 /TIER=ConsEnd /STK=3 /UG=Rn.50795 /UG_TITLE=ESTs AW534183 BCL6 co-repressor-like 1 Bcorl1 302810 NM_001191587 /// XM_001059711 /// XM_002727668 /// XM_002730291 /// XM_217627 1378731_at BF404871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404871 /DB_XREF=gi:11392846 /DB_XREF=UI-R-CA1-bic-f-07-0-UI.s1 /CLONE=UI-R-CA1-bic-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.62858.1 /TIER=ConsEnd /STK=3 /UG=Rn.62858 /UG_TITLE=ESTs BF404871 fibrosin Fbrs 691899 XM_001080034 /// XM_002725689 1378732_at BM387452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387452 /DB_XREF=gi:18187505 /DB_XREF=UI-R-CN1-cjj-g-04-0-UI.s1 /CLONE=UI-R-CN1-cjj-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.66006.1 /TIER=ConsEnd /STK=3 /UG=Rn.66006 /UG_TITLE=ESTs BM387452 1378733_at BF403401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403401 /DB_XREF=gi:11391338 /DB_XREF=UI-R-CA1-biy-m-02-0-UI.s1 /CLONE=UI-R-CA1-biy-m-02-0-UI /FEA=EST /CNT=3 /TID=Rn.62411.1 /TIER=ConsEnd /STK=3 /UG=Rn.62411 /UG_TITLE=ESTs BF403401 1378734_at AI598945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598945 /DB_XREF=gi:4607993 /DB_XREF=EST250648 /CLONE=REMDY68 /FEA=EST /CNT=3 /TID=Rn.27504.1 /TIER=ConsEnd /STK=3 /UG=Rn.27504 /UG_TITLE=ESTs AI598945 gastrulation brain homeobox 2 Gbx2 114500 NM_053708 0001569 // patterning of blood vessels // not recorded /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0021549 // cerebellum development // not recorded /// 0021549 // cerebellum development // inferred from electronic annotation /// 0021555 // midbrain-hindbrain boundary morphogenesis // not recorded /// 0021555 // midbrain-hindbrain boundary morphogenesis // inferred from electronic annotation /// 0021568 // rhombomere 2 development // not recorded /// 0021568 // rhombomere 2 development // inferred from electronic annotation /// 0021930 // granule cell precursor proliferation // not recorded /// 0021930 // granule cell precursor proliferation // inferred from electronic annotation /// 0030902 // hindbrain development // not recorded /// 0030902 // hindbrain development // inferred from electronic annotation /// 0030917 // midbrain-hindbrain boundary development // not recorded /// 0030917 // midbrain-hindbrain boundary development // inferred from electronic annotation /// 0035239 // tube morphogenesis // not recorded /// 0035239 // tube morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048483 // autonomic nervous system development // not recorded /// 0048483 // autonomic nervous system development // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1378735_at BG378988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378988 /DB_XREF=gi:13303460 /DB_XREF=UI-R-BT1-bnm-a-06-0-UI.s1 /CLONE=UI-R-BT1-bnm-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.61141.1 /TIER=ConsEnd /STK=3 /UG=Rn.61141 /UG_TITLE=ESTs BG378988 1378736_at BF391862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391862 /DB_XREF=gi:11376717 /DB_XREF=UI-R-CA1-bcy-d-12-0-UI.s1 /CLONE=UI-R-CA1-bcy-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.66088.1 /TIER=ConsEnd /STK=3 /UG=Rn.66088 /UG_TITLE=ESTs BF391862 1378737_at BF402112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402112 /DB_XREF=gi:11390051 /DB_XREF=UI-R-CA1-bim-f-04-0-UI.s1 /CLONE=UI-R-CA1-bim-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.59436.1 /TIER=ConsEnd /STK=3 /UG=Rn.59436 /UG_TITLE=ESTs BF402112 1378738_at BE097574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097574 /DB_XREF=gi:8488505 /DB_XREF=UI-R-BO1-apz-b-12-0-UI.s1 /CLONE=UI-R-BO1-apz-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.6518.1 /TIER=ConsEnd /STK=3 /UG=Rn.6518 /UG_TITLE=ESTs BE097574 potassium voltage-gated channel, shaker-related subfamily, beta member 1 Kcnab1 29737 NM_017303 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1378739_at AA818135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818135 /DB_XREF=gi:4198649 /DB_XREF=UI-R-A0-am-a-04-0-UI.s1 /CLONE=UI-R-A0-am-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.33794.1 /TIER=ConsEnd /STK=3 /UG=Rn.33794 /UG_TITLE=ESTs AA818135 cell death-inducing DFFA-like effector c Cidec 500292 NM_001024333 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation 1378740_at AI577567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577567 /DB_XREF=gi:4561943 /DB_XREF=UI-R-Y0-vk-d-04-0-UI.s1 /CLONE=UI-R-Y0-vk-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.38917.1 /TIER=ConsEnd /STK=3 /UG=Rn.38917 /UG_TITLE=ESTs, Weakly similar to T14259 ras GTPase-activating protein, synaptic - rat (R.norvegicus) AI577567 RAS protein activator like 2 Rasal2 304893 NM_001107188 0007165 // signal transduction // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation 1378741_at AA850260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850260 /DB_XREF=gi:4131815 /DB_XREF=EST193027 /CLONE=ROVAE29 /FEA=EST /CNT=3 /TID=Rn.35652.1 /TIER=ConsEnd /STK=3 /UG=Rn.35652 /UG_TITLE=ESTs, Weakly similar to 2A5R MOUSE PROTEIN PHOSPHATASE 2A, 59 KDA REGULATORY SUBUNIT B (M.musculus) AA850260 protein phosphatase 2, regulatory subunit B'', gamma Ppp2r3c 362739 NM_001014196 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378742_at BM388241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388241 /DB_XREF=gi:18188294 /DB_XREF=UI-R-DM1-cjz-g-10-0-UI.s1 /CLONE=UI-R-DM1-cjz-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.37615.1 /TIER=ConsEnd /STK=3 /UG=Rn.37615 /UG_TITLE=ESTs BM388241 1378743_at BE106252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106252 /DB_XREF=gi:8498354 /DB_XREF=UI-R-BO1-asl-g-06-0-UI.s1 /CLONE=UI-R-BO1-asl-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.48050.1 /TIER=ConsEnd /STK=3 /UG=Rn.48050 /UG_TITLE=ESTs, Weakly similar to JC7136 peptidylprolyl isomerase (EC 5.2.1.8) - mouse (M.musculus) BE106252 similar to Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 (Rotamase Pin4) (PPIase Pin4) LOC684441 684441 XR_086374 /// XR_086666 1378744_at AI412523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412523 /DB_XREF=gi:4256027 /DB_XREF=EST240822 /CLONE=RBRDW66 /FEA=EST /CNT=3 /TID=Rn.58331.1 /TIER=ConsEnd /STK=3 /UG=Rn.58331 /UG_TITLE=ESTs AI412523 1378745_at BG374483 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374483 /DB_XREF=gi:13298955 /DB_XREF=UI-R-CV1-bsp-h-10-0-UI.s1 /CLONE=UI-R-CV1-bsp-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.73043.1 /TIER=ConsEnd /STK=3 /UG=Rn.73043 /UG_TITLE=ESTs, Weakly similar to T13957 period protein PER2 - rat (R.norvegicus) BG374483 period homolog 3 (Drosophila) Per3 78962 NM_023978 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0007623 // circadian rhythm // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378746_at AI013683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013683 /DB_XREF=gi:3227739 /DB_XREF=EST208358 /CLONE=RSPBR61 /FEA=EST /CNT=3 /TID=Rn.53725.1 /TIER=ConsEnd /STK=3 /UG=Rn.53725 /UG_TITLE=ESTs AI013683 1378747_x_at AI013683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013683 /DB_XREF=gi:3227739 /DB_XREF=EST208358 /CLONE=RSPBR61 /FEA=EST /CNT=3 /TID=Rn.53725.1 /TIER=ConsEnd /STK=3 /UG=Rn.53725 /UG_TITLE=ESTs AI013683 1378748_at BF400032 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400032 /DB_XREF=gi:11385007 /DB_XREF=UI-R-CA1-bia-d-10-0-UI.s1 /CLONE=UI-R-CA1-bia-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.62205.1 /TIER=ConsEnd /STK=3 /UG=Rn.62205 /UG_TITLE=ESTs, Highly similar to GPC6_MOUSE GLYPICAN-6 PRECURSOR (M.musculus) BF400032 similar to Glypican-6 precursor LOC691984 691984 XM_001077762 /// XM_002725130 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0043395 // heparan sulfate proteoglycan binding // inferred from electronic annotation 1378749_at AI548972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548972 /DB_XREF=gi:4466460 /DB_XREF=UI-R-C3-tw-h-12-0-UI.s1 /CLONE=UI-R-C3-tw-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.41706.1 /TIER=ConsEnd /STK=3 /UG=Rn.41706 /UG_TITLE=ESTs AI548972 1378750_at BF417605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417605 /DB_XREF=gi:11405594 /DB_XREF=UI-R-CN0-blq-a-11-0-UI.s1 /CLONE=UI-R-CN0-blq-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.46542.1 /TIER=ConsEnd /STK=3 /UG=Rn.46542 /UG_TITLE=ESTs BF417605 hypothetical protein LOC680874 LOC680874 680874 XR_005897 /// XR_085845 1378751_at BF395788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395788 /DB_XREF=gi:11380759 /DB_XREF=UI-R-BT1-bkc-c-10-0-UI.s1 /CLONE=UI-R-BT1-bkc-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.58446.1 /TIER=ConsEnd /STK=3 /UG=Rn.58446 /UG_TITLE=ESTs, Weakly similar to B40033 protein kinase (R.norvegicus) BF395788 mitogen-activated protein kinase 4 Mapk4 54268 XM_001053505 /// XM_225726 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004707 // MAP kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1378752_at BF413430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413430 /DB_XREF=gi:11401419 /DB_XREF=UI-R-BT1-bob-a-08-0-UI.s1 /CLONE=UI-R-BT1-bob-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.62339.1 /TIER=ConsEnd /STK=3 /UG=Rn.62339 /UG_TITLE=ESTs BF413430 1378753_at AI638971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI638971 /DB_XREF=gi:4700005 /DB_XREF=rx04989s /CLONE=rx04989 /FEA=EST /CNT=3 /TID=Rn.891.1 /TIER=ConsEnd /STK=3 /UG=Rn.891 /UG_TITLE=ESTs AI638971 occludin Ocln 83497 NM_031329 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0046498 // S-adenosylhomocysteine metabolic process // inferred from direct assay /// 0046500 // S-adenosylmethionine metabolic process // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // not recorded /// 0005923 // tight junction // non-traceable author statement /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // not recorded /// 0030054 // cell junction // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008119 // thiopurine S-methyltransferase activity // inferred from direct assay /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from direct assay 1378754_at BI274328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274328 /DB_XREF=gi:14885158 /DB_XREF=UI-R-CW0-bwh-f-03-0-UI.s1 /CLONE=UI-R-CW0-bwh-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.16196.2 /TIER=ConsEnd /STK=3 /UG=Rn.16196 /UG_TITLE=ESTs BI274328 1378755_at AW523689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523689 /DB_XREF=gi:7166074 /DB_XREF=UI-R-BO0-aih-a-08-0-UI.s1 /CLONE=UI-R-BO0-aih-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.49061.1 /TIER=ConsEnd /STK=3 /UG=Rn.49061 /UG_TITLE=ESTs AW523689 hypothetical protein LOC680656 LOC680656 680656 XM_001058198 /// XM_002726624 1378756_at BF409203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409203 /DB_XREF=gi:11397178 /DB_XREF=UI-R-BT1-bkn-c-06-0-UI.s1 /CLONE=UI-R-BT1-bkn-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.61278.1 /TIER=ConsEnd /STK=3 /UG=Rn.61278 /UG_TITLE=ESTs, Weakly similar to PAP_HUMAN POLY(A) POLYMERASE (H.sapiens) BF409203 poly (A) polymerase beta (testis specific) Papolb 304300 NM_001012020 0006350 // transcription // inferred from electronic annotation /// 0031123 // RNA 3'-end processing // inferred from electronic annotation /// 0043631 // RNA polyadenylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0004652 // polynucleotide adenylyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1378757_at BG375931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375931 /DB_XREF=gi:13300403 /DB_XREF=UI-R-CU0-bur-d-01-0-UI.s1 /CLONE=UI-R-CU0-bur-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.49361.1 /TIER=ConsEnd /STK=3 /UG=Rn.49361 /UG_TITLE=ESTs BG375931 Similar to RIKEN cDNA 6330408A02 gene RGD1310257 308381 XM_001073289 /// XM_218322 0005515 // protein binding // not recorded 1378758_at BG380223 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380223 /DB_XREF=gi:13304695 /DB_XREF=UI-R-CS0-btq-e-03-0-UI.s1 /CLONE=UI-R-CS0-btq-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.66733.1 /TIER=ConsEnd /STK=3 /UG=Rn.66733 /UG_TITLE=ESTs BG380223 1378759_at BE102644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102644 /DB_XREF=gi:8494743 /DB_XREF=UI-R-BT1-aqs-d-05-0-UI.s1 /CLONE=UI-R-BT1-aqs-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.50361.1 /TIER=ConsEnd /STK=3 /UG=Rn.50361 /UG_TITLE=ESTs BE102644 1378760_at BF407639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407639 /DB_XREF=gi:11395614 /DB_XREF=UI-R-BJ2-bqu-f-06-0-UI.s1 /CLONE=UI-R-BJ2-bqu-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.51784.1 /TIER=ConsEnd /STK=3 /UG=Rn.51784 /UG_TITLE=ESTs BF407639 similar to RIKEN cDNA 0610011L14 gene RGD1311066 296312 NM_001106535 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378761_at BF392783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392783 /DB_XREF=gi:11377641 /DB_XREF=UI-R-CA0-bfo-b-11-0-UI.s1 /CLONE=UI-R-CA0-bfo-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.60851.1 /TIER=ConsEnd /STK=3 /UG=Rn.60851 /UG_TITLE=ESTs BF392783 1378762_at BF419592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419592 /DB_XREF=gi:11407581 /DB_XREF=UI-R-CA0-bpd-h-10-0-UI.s1 /CLONE=UI-R-CA0-bpd-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.63619.1 /TIER=ConsEnd /STK=3 /UG=Rn.63619 /UG_TITLE=ESTs BF419592 1378763_at BF419627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419627 /DB_XREF=gi:11407616 /DB_XREF=UI-R-CA0-bpe-d-04-0-UI.s1 /CLONE=UI-R-CA0-bpe-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.27749.1 /TIER=ConsEnd /STK=3 /UG=Rn.27749 /UG_TITLE=ESTs BF419627 hypothetical gene supported by BC088439 LOC500947 500947 NM_001144870 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1378764_at BE106826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106826 /DB_XREF=gi:8498928 /DB_XREF=UI-R-BT1-ast-f-03-0-UI.s1 /CLONE=UI-R-BT1-ast-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.41566.1 /TIER=ConsEnd /STK=3 /UG=Rn.41566 /UG_TITLE=ESTs BE106826 1378765_at BM384731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384731 /DB_XREF=gi:18184779 /DB_XREF=UI-R-CN1-cjl-f-21-0-UI.s2 /CLONE=UI-R-CN1-cjl-f-21-0-UI /FEA=EST /CNT=3 /TID=Rn.79936.1 /TIER=ConsEnd /STK=3 /UG=Rn.79936 /UG_TITLE=ESTs BM384731 mitochondrial ubiquitin ligase activator of NFKB 1 Mul1 298576 NM_001106695 0000266 // mitochondrial fission // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0006919 // activation of caspase activity // not recorded /// 0007257 // activation of JUN kinase activity // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0030308 // negative regulation of cell growth // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0051646 // mitochondrion localization // not recorded 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // not recorded /// 0031307 // integral to mitochondrial outer membrane // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004871 // signal transducer activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1378766_at AI236320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236320 /DB_XREF=gi:3829826 /DB_XREF=EST232882 /CLONE=ROVDE17 /FEA=EST /CNT=3 /TID=Rn.25554.1 /TIER=ConsEnd /STK=3 /UG=Rn.25554 /UG_TITLE=ESTs AI236320 1378767_at BE104003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104003 /DB_XREF=gi:8496103 /DB_XREF=UI-R-BX0-ari-e-07-0-UI.s1 /CLONE=UI-R-BX0-ari-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.46019.1 /TIER=ConsEnd /STK=3 /UG=Rn.46019 /UG_TITLE=ESTs BE104003 Ataxin 7-like 2 Atxn7l2 310781 XM_001070248 /// XM_002726062 /// XM_002726063 /// XM_002729102 /// XM_002729103 /// XM_227583 1378768_at BF388558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388558 /DB_XREF=gi:11373382 /DB_XREF=UI-R-CA1-bda-h-08-0-UI.s1 /CLONE=UI-R-CA1-bda-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.49521.1 /TIER=ConsEnd /STK=3 /UG=Rn.49521 /UG_TITLE=ESTs BF388558 1378769_at BE099509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099509 /DB_XREF=gi:8491386 /DB_XREF=UI-R-BJ1-atj-b-11-0-UI.s1 /CLONE=UI-R-BJ1-atj-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.49880.1 /TIER=ConsEnd /STK=3 /UG=Rn.49880 /UG_TITLE=ESTs BE099509 1378770_at BE102513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102513 /DB_XREF=gi:8494612 /DB_XREF=UI-R-BT1-aqn-e-09-0-UI.s1 /CLONE=UI-R-BT1-aqn-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.50323.1 /TIER=ConsEnd /STK=3 /UG=Rn.50323 /UG_TITLE=ESTs BE102513 1378771_at BF411808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411808 /DB_XREF=gi:11399797 /DB_XREF=UI-R-BT1-bmw-d-11-0-UI.s1 /CLONE=UI-R-BT1-bmw-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.61929.1 /TIER=ConsEnd /STK=3 /UG=Rn.61929 /UG_TITLE=ESTs BF411808 1378772_at BF403919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403919 /DB_XREF=gi:11391894 /DB_XREF=UI-R-CA1-bjd-h-05-0-UI.s1 /CLONE=UI-R-CA1-bjd-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.63591.1 /TIER=ConsEnd /STK=3 /UG=Rn.63591 /UG_TITLE=ESTs BF403919 1378773_at BG372744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372744 /DB_XREF=gi:13269281 /DB_XREF=UI-R-CV1-brt-b-06-0-UI.s1 /CLONE=UI-R-CV1-brt-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.73429.1 /TIER=ConsEnd /STK=3 /UG=Rn.73429 /UG_TITLE=ESTs BG372744 1378774_at BE115264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115264 /DB_XREF=gi:8507369 /DB_XREF=UI-R-CA0-axr-c-03-0-UI.s1 /CLONE=UI-R-CA0-axr-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.26570.1 /TIER=ConsEnd /STK=3 /UG=Rn.26570 /UG_TITLE=ESTs BE115264 1378775_at BG374753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374753 /DB_XREF=gi:13299225 /DB_XREF=UI-R-CV1-bsv-a-11-0-UI.s1 /CLONE=UI-R-CV1-bsv-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.35527.1 /TIER=ConsEnd /STK=3 /UG=Rn.35527 /UG_TITLE=ESTs BG374753 RGD1562339 RGD1562339 498107 XM_001058431 /// XM_579785 1378776_at BE097103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097103 /DB_XREF=gi:8488034 /DB_XREF=UI-R-BO1-apt-c-01-0-UI.s1 /CLONE=UI-R-BO1-apt-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.51038.1 /TIER=ConsEnd /STK=3 /UG=Rn.51038 /UG_TITLE=ESTs BE097103 POU class 6 homeobox 1 Pou6f1 116545 NM_001105746 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1378777_at BF402045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402045 /DB_XREF=gi:11390020 /DB_XREF=UI-R-CA1-bim-c-06-0-UI.s1 /CLONE=UI-R-CA1-bim-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.58289.1 /TIER=ConsEnd /STK=3 /UG=Rn.58289 /UG_TITLE=ESTs BF402045 1378778_a_at BF394727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394727 /DB_XREF=gi:11379685 /DB_XREF=UI-R-CA0-bge-b-12-0-UI.s1 /CLONE=UI-R-CA0-bge-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.59729.1 /TIER=ConsEnd /STK=3 /UG=Rn.59729 /UG_TITLE=ESTs BF394727 1378779_at BF386454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386454 /DB_XREF=gi:11371278 /DB_XREF=UI-R-CA1-bbd-f-11-0-UI.s1 /CLONE=UI-R-CA1-bbd-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.62753.1 /TIER=ConsEnd /STK=3 /UG=Rn.62753 /UG_TITLE=ESTs BF386454 1378780_at BF410325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410325 /DB_XREF=gi:11398300 /DB_XREF=UI-R-CA1-bjw-b-08-0-UI.s1 /CLONE=UI-R-CA1-bjw-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.61661.1 /TIER=ConsEnd /STK=3 /UG=Rn.61661 /UG_TITLE=ESTs BF410325 1378781_at AI712400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712400 /DB_XREF=gi:5016200 /DB_XREF=UI-R-AF1-aaw-b-05-0-UI.s1 /CLONE=UI-R-AF1-aaw-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.44732.1 /TIER=ConsEnd /STK=3 /UG=Rn.44732 /UG_TITLE=ESTs AI712400 1378782_at BE115603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115603 /DB_XREF=gi:8507708 /DB_XREF=UI-R-BJ1-avw-g-10-0-UI.s1 /CLONE=UI-R-BJ1-avw-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.52535.1 /TIER=ConsEnd /STK=3 /UG=Rn.52535 /UG_TITLE=ESTs BE115603 DEAH (Asp-Glu-Ala-His) box polypeptide 29 LOC100362324 100362324 XM_002725889 /// XM_002729007 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1378783_at AI144739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144739 /DB_XREF=gi:3666538 /DB_XREF=UI-R-BT0-po-e-04-0-UI.s1 /CLONE=UI-R-BT0-po-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.16104.1 /TIER=ConsEnd /STK=3 /UG=Rn.16104 /UG_TITLE=ESTs AI144739 1378784_at BE111117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111117 /DB_XREF=gi:8503222 /DB_XREF=UI-R-BJ1-auz-g-11-0-UI.s1 /CLONE=UI-R-BJ1-auz-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.51965.1 /TIER=ConsEnd /STK=3 /UG=Rn.51965 /UG_TITLE=ESTs BE111117 1378785_at BI288719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288719 /DB_XREF=gi:14945577 /DB_XREF=UI-R-DK0-cde-b-08-0-UI.s1 /CLONE=UI-R-DK0-cde-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.45106.1 /TIER=ConsEnd /STK=3 /UG=Rn.45106 /UG_TITLE=ESTs BI288719 1378786_at AI228437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228437 /DB_XREF=gi:3812324 /DB_XREF=EST225132 /CLONE=RBRCU78 /FEA=EST /CNT=3 /TID=Rn.24326.1 /TIER=ConsEnd /STK=3 /UG=Rn.24326 /UG_TITLE=ESTs AI228437 1378787_a_at BI294701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294701 /DB_XREF=gi:14957412 /DB_XREF=UI-R-DK0-ceb-a-11-0-UI.s1 /CLONE=UI-R-DK0-ceb-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.38254.1 /TIER=ConsEnd /STK=3 /UG=Rn.38254 /UG_TITLE=ESTs BI294701 DiGeorge syndrome critical region gene 14 Dgcr14 360741 NM_001012472 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 1378788_at AW535970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535970 /DB_XREF=gi:7178384 /DB_XREF=UI-R-C4-amb-f-02-0-UI.s1 /CLONE=UI-R-C4-amb-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.47323.1 /TIER=ConsEnd /STK=3 /UG=Rn.47323 /UG_TITLE=ESTs AW535970 zinc finger protein 474 Znf474 307310 NM_001107380 1378789_at BF404861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404861 /DB_XREF=gi:11392836 /DB_XREF=UI-R-CA1-bic-e-09-0-UI.s1 /CLONE=UI-R-CA1-bic-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.62866.1 /TIER=ConsEnd /STK=3 /UG=Rn.62866 /UG_TITLE=ESTs BF404861 1378790_at AW535379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535379 /DB_XREF=gi:7177793 /DB_XREF=UI-R-BS0-aoe-e-03-0-UI.s1 /CLONE=UI-R-BS0-aoe-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.39291.1 /TIER=ConsEnd /STK=3 /UG=Rn.39291 /UG_TITLE=ESTs AW535379 1378791_at BF398201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398201 /DB_XREF=gi:11383188 /DB_XREF=UI-R-BS2-ben-f-10-0-UI.s1 /CLONE=UI-R-BS2-ben-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.66100.1 /TIER=ConsEnd /STK=3 /UG=Rn.66100 /UG_TITLE=ESTs BF398201 mitogen activated protein kinase kinase kinase 4 Map3k4 308106 NM_001107456 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0043507 // positive regulation of JUN kinase activity // not recorded 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1378792_at BE105401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105401 /DB_XREF=gi:8497503 /DB_XREF=UI-R-BO1-asn-d-02-0-UI.s1 /CLONE=UI-R-BO1-asn-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.23273.1 /TIER=ConsEnd /STK=3 /UG=Rn.23273 /UG_TITLE=ESTs BE105401 similar to Kiaa0575 RGD1564091 500633 XR_085857 /// XR_086270 1378793_at BE121233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121233 /DB_XREF=gi:8513338 /DB_XREF=UI-R-CA0-bas-e-12-0-UI.s1 /CLONE=UI-R-CA0-bas-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.53025.1 /TIER=ConsEnd /STK=3 /UG=Rn.53025 /UG_TITLE=ESTs BE121233 1378794_at BF389754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389754 /DB_XREF=gi:11374590 /DB_XREF=UI-R-BS2-bdo-d-04-0-UI.s1 /CLONE=UI-R-BS2-bdo-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.57274.1 /TIER=ConsEnd /STK=3 /UG=Rn.57274 /UG_TITLE=ESTs BF389754 1378795_at AI549094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549094 /DB_XREF=gi:4466582 /DB_XREF=UI-R-C3-tq-e-03-0-UI.s1 /CLONE=UI-R-C3-tq-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.9438.1 /TIER=ConsEnd /STK=3 /UG=Rn.9438 /UG_TITLE=ESTs AI549094 1378796_at AA964584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964584 /DB_XREF=gi:4279458 /DB_XREF=UI-R-C0-gv-a-01-0-UI.s1 /CLONE=UI-R-C0-gv-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.11850.1 /TIER=ConsEnd /STK=3 /UG=Rn.11850 /UG_TITLE=ESTs, Weakly similar to slit (Drosophila) homolog 3 (Rattus norvegicus) (R.norvegicus) AA964584 oligodendrocyte-myelin glycoprotein Omg 450224 NM_001005898 0031102 // neuron projection regeneration // not recorded /// 0048683 // regulation of collateral sprouting of intact axon in response to injury // not recorded /// 0050770 // regulation of axonogenesis // not recorded /// 0050771 // negative regulation of axonogenesis // not recorded 0005886 // plasma membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1378797_at BF394883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394883 /DB_XREF=gi:11379841 /DB_XREF=UI-R-CA0-bgf-a-06-0-UI.s1 /CLONE=UI-R-CA0-bgf-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.58086.1 /TIER=ConsEnd /STK=3 /UG=Rn.58086 /UG_TITLE=ESTs BF394883 1378798_at BF406062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406062 /DB_XREF=gi:11394037 /DB_XREF=UI-R-CA1-bje-f-16-0-UI.s1 /CLONE=UI-R-CA1-bje-f-16-0-UI /FEA=EST /CNT=3 /TID=Rn.60890.1 /TIER=ConsEnd /STK=3 /UG=Rn.60890 /UG_TITLE=ESTs BF406062 storkhead box 2 Stox2 306459 NM_001134863 /// NM_173107 1378799_at BF394913 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394913 /DB_XREF=gi:11379873 /DB_XREF=UI-R-CA0-bgf-d-04-0-UI.s1 /CLONE=UI-R-CA0-bgf-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.64300.1 /TIER=ConsEnd /STK=3 /UG=Rn.64300 /UG_TITLE=ESTs BF394913 1378800_at BI291526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291526 /DB_XREF=gi:14951151 /DB_XREF=UI-R-DM0-cis-n-01-0-UI.s1 /CLONE=UI-R-DM0-cis-n-01-0-UI /FEA=EST /CNT=3 /TID=Rn.61644.1 /TIER=ConsEnd /STK=3 /UG=Rn.61644 /UG_TITLE=ESTs BI291526 1378801_at AI599072 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599072 /DB_XREF=gi:4608120 /DB_XREF=EST250775 /CLONE=REMEB16 /FEA=EST /CNT=3 /TID=Rn.38585.1 /TIER=ConsEnd /STK=3 /UG=Rn.38585 /UG_TITLE=ESTs AI599072 1378802_at AI105366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105366 /DB_XREF=gi:3709463 /DB_XREF=EST214655 /CLONE=RKIBJ40 /FEA=EST /CNT=3 /TID=Rn.33808.1 /TIER=ConsEnd /STK=3 /UG=Rn.33808 /UG_TITLE=ESTs, Weakly similar to T32568 hypothetical protein F37C4.6 - Caenorhabditis elegans (C.elegans) AI105366 pyridine nucleotide-disulphide oxidoreductase domain 2 Pyroxd2 309381 NM_001004261 0055114 // oxidation reduction // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation 1378803_at BF400968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400968 /DB_XREF=gi:11388943 /DB_XREF=UI-R-CA0-bgi-a-07-0-UI.s1 /CLONE=UI-R-CA0-bgi-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.47156.1 /TIER=ConsEnd /STK=3 /UG=Rn.47156 /UG_TITLE=ESTs, Weakly similar to HK61 RAT HOMEOBOX PROTEIN NKX-6.1 (R.norvegicus) BF400968 NK6 homeobox 2 Nkx6-2 309095 NM_001107558 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0010454 // negative regulation of cell fate commitment // not recorded /// 0010455 // positive regulation of cell fate commitment // not recorded /// 0021912 // regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification // not recorded /// 0021913 // regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification // not recorded /// 0022010 // central nervous system myelination // not recorded /// 0030154 // cell differentiation // not recorded /// 0031018 // endocrine pancreas development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045686 // negative regulation of glial cell differentiation // not recorded /// 0045687 // positive regulation of glial cell differentiation // not recorded /// 0048709 // oligodendrocyte differentiation // not recorded /// 0050885 // neuromuscular process controlling balance // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1378804_at BE098265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098265 /DB_XREF=gi:8490128 /DB_XREF=UI-R-BJ1-asz-f-12-0-UI.s1 /CLONE=UI-R-BJ1-asz-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.49776.1 /TIER=ConsEnd /STK=3 /UG=Rn.49776 /UG_TITLE=ESTs BE098265 1378805_at BE104220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104220 /DB_XREF=gi:8496320 /DB_XREF=UI-R-BX0-arm-c-02-0-UI.s1 /CLONE=UI-R-BX0-arm-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.50616.1 /TIER=ConsEnd /STK=3 /UG=Rn.50616 /UG_TITLE=ESTs BE104220 1378806_at BF392451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392451 /DB_XREF=gi:11377308 /DB_XREF=UI-R-CA0-bfj-d-05-0-UI.s1 /CLONE=UI-R-CA0-bfj-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.57827.1 /TIER=ConsEnd /STK=3 /UG=Rn.57827 /UG_TITLE=ESTs BF392451 1378807_at BF400251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400251 /DB_XREF=gi:11385262 /DB_XREF=UI-R-CA1-bjc-h-15-0-UI.s1 /CLONE=UI-R-CA1-bjc-h-15-0-UI /FEA=EST /CNT=3 /TID=Rn.62804.1 /TIER=ConsEnd /STK=3 /UG=Rn.62804 /UG_TITLE=ESTs BF400251 1378808_at AA925542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925542 /DB_XREF=gi:4236733 /DB_XREF=UI-R-A1-em-g-09-0-UI.s1 /CLONE=UI-R-A1-em-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.18925.1 /TIER=ConsEnd /STK=3 /UG=Rn.18925 /UG_TITLE=ESTs AA925542 1378809_at BF416647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416647 /DB_XREF=gi:11404636 /DB_XREF=UI-R-CA0-bku-b-06-0-UI.s1 /CLONE=UI-R-CA0-bku-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.46429.1 /TIER=ConsEnd /STK=3 /UG=Rn.46429 /UG_TITLE=ESTs BF416647 1378810_at BE114206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114206 /DB_XREF=gi:8506311 /DB_XREF=UI-R-CA0-axo-c-10-0-UI.s1 /CLONE=UI-R-CA0-axo-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.52325.1 /TIER=ConsEnd /STK=3 /UG=Rn.52325 /UG_TITLE=ESTs BE114206 1378811_at BF402978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402978 /DB_XREF=gi:11390953 /DB_XREF=UI-R-CA0-bhl-a-05-0-UI.s1 /CLONE=UI-R-CA0-bhl-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.43109.1 /TIER=ConsEnd /STK=3 /UG=Rn.43109 /UG_TITLE=ESTs BF402978 1378812_at BF412101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412101 /DB_XREF=gi:11400090 /DB_XREF=UI-R-BT1-bmy-f-05-0-UI.s1 /CLONE=UI-R-BT1-bmy-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.46017.1 /TIER=ConsEnd /STK=3 /UG=Rn.46017 /UG_TITLE=ESTs, Weakly similar to TC17 RAT TRANSCRIPTION FACTOR 17 (R.norvegicus) BF412101 zinc finger protein 3 Zfp3 497944 NM_001109034 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1378813_at BF398841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398841 /DB_XREF=gi:11383842 /DB_XREF=UI-R-CA1-biz-m-05-0-UI.s1 /CLONE=UI-R-CA1-biz-m-05-0-UI /FEA=EST /CNT=3 /TID=Rn.62907.1 /TIER=ConsEnd /STK=3 /UG=Rn.62907 /UG_TITLE=ESTs BF398841 1378814_at BF387902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387902 /DB_XREF=gi:11372726 /DB_XREF=UI-R-CA1-bbw-b-01-0-UI.s1 /CLONE=UI-R-CA1-bbw-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.64346.1 /TIER=ConsEnd /STK=3 /UG=Rn.64346 /UG_TITLE=ESTs BF387902 1378815_at BG372376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372376 /DB_XREF=gi:13268913 /DB_XREF=UI-R-CV1-bsc-a-03-0-UI.s1 /CLONE=UI-R-CV1-bsc-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.76498.1 /TIER=ConsEnd /STK=3 /UG=Rn.76498 /UG_TITLE=ESTs BG372376 similar to Gamma-tubulin complex component 4 (GCP-4) RGD1306924 362203 XM_001076537 /// XM_002729205 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation 0000922 // spindle pole // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation 1378816_a_at AI175488 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175488 /DB_XREF=gi:3726126 /DB_XREF=EST219040 /CLONE=RMUCO13 /FEA=EST /CNT=3 /TID=Rn.21226.1 /TIER=ConsEnd /STK=3 /UG=Rn.21226 /UG_TITLE=ESTs, Highly similar to A34581 oxysterol-binding protein (H.sapiens) AI175488 oxysterol binding protein Osbp 365410 NM_001108927 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation 1378817_at AW434016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434016 /DB_XREF=gi:6965323 /DB_XREF=UI-R-BJ0p-afo-c-09-0-UI.s1 /CLONE=UI-R-BJ0p-afo-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.21945.1 /TIER=ConsEnd /STK=3 /UG=Rn.21945 /UG_TITLE=ESTs, Moderately similar to PD0026 microphthalmia-associated transcription factor, Mitf-a - mouse (M.musculus) AW434016 intersectin 1 (SH3 domain protein) Itsn1 29491 NM_001136096 /// NM_019227 0006887 // exocytosis // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0042327 // positive regulation of phosphorylation // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030139 // endocytic vesicle // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0019209 // kinase activator activity // not recorded 1378818_at BE095996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095996 /DB_XREF=gi:8486927 /DB_XREF=UI-R-BU0-apk-b-05-0-UI.s1 /CLONE=UI-R-BU0-apk-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.43289.1 /TIER=ConsEnd /STK=3 /UG=Rn.43289 /UG_TITLE=ESTs BE095996 1378819_at AW435096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435096 /DB_XREF=gi:6966403 /DB_XREF=UI-R-BJ0p-afy-e-10-0-UI.s1 /CLONE=UI-R-BJ0p-afy-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.54118.1 /TIER=ConsEnd /STK=3 /UG=Rn.54118 /UG_TITLE=ESTs, Weakly similar to T21069 hypothetical protein F17C8.3 - Caenorhabditis elegans (C.elegans) AW435096 aspartate dehydrogenase domain containing Aspdh 292875 NM_001009643 0006742 // NADP catabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009435 // NAD biosynthetic process // inferred from electronic annotation /// 0019363 // pyridine nucleotide biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0033735 // aspartate dehydrogenase activity // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from electronic annotation 1378820_at BF392377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392377 /DB_XREF=gi:11377234 /DB_XREF=UI-R-CA0-bfi-d-11-0-UI.s1 /CLONE=UI-R-CA0-bfi-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.63582.1 /TIER=ConsEnd /STK=3 /UG=Rn.63582 /UG_TITLE=ESTs, Weakly similar to S26689 hypothetical protein hc1 - mouse (M.musculus) BF392377 1378821_at BE102785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102785 /DB_XREF=gi:8494884 /DB_XREF=UI-R-BT1-aqt-c-04-0-UI.s1 /CLONE=UI-R-BT1-aqt-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.68688.1 /TIER=ConsEnd /STK=3 /UG=Rn.68688 /UG_TITLE=ESTs BE102785 inositol 1,3,4-triphosphate 5/6 kinase /// similar to inositol 1,3,4-triphosphate 5/6 kinase Itpk1 /// LOC683482 500709 /// 683482 NM_001191985 /// XM_002726766 /// XM_576090 0032957 // inositol trisphosphate metabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0035300 // inositol-1,3,4-trisphosphate 5/6-kinase activity // inferred from electronic annotation /// 0047325 // inositol tetrakisphosphate 1-kinase activity // inferred from electronic annotation 1378822_at BF563999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563999 /DB_XREF=gi:11673777 /DB_XREF=UI-R-C4-alb-h-02-0-UI.r1 /CLONE=UI-R-C4-alb-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.41268.1 /TIER=ConsEnd /STK=3 /UG=Rn.41268 /UG_TITLE=ESTs BF563999 1378823_at BF409131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409131 /DB_XREF=gi:11397106 /DB_XREF=UI-R-BT1-bkm-d-04-0-UI.s1 /CLONE=UI-R-BT1-bkm-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.61261.1 /TIER=ConsEnd /STK=3 /UG=Rn.61261 /UG_TITLE=ESTs BF409131 1378824_at BF389173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389173 /DB_XREF=gi:11374001 /DB_XREF=UI-R-BS2-bdl-f-06-0-UI.s1 /CLONE=UI-R-BS2-bdl-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.15216.1 /TIER=ConsEnd /STK=3 /UG=Rn.15216 /UG_TITLE=ESTs BF389173 1378825_a_at AI011101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011101 /DB_XREF=gi:3224933 /DB_XREF=EST205552 /CLONE=RMUAX49 /FEA=EST /CNT=3 /TID=Rn.22411.1 /TIER=ConsEnd /STK=3 /UG=Rn.22411 /UG_TITLE=ESTs, Highly similar to T00257 hypothetical protein KIAA0476 (H.sapiens) AI011101 1378826_at AI716049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716049 /DB_XREF=gi:5033302 /DB_XREF=UI-R-Y0-acd-d-09-0-UI.s1 /CLONE=UI-R-Y0-acd-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.41510.1 /TIER=ConsEnd /STK=3 /UG=Rn.41510 /UG_TITLE=ESTs AI716049 1378827_at AI711501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711501 /DB_XREF=gi:5001277 /DB_XREF=UI-R-AA1-zy-g-03-0-UI.s1 /CLONE=UI-R-AA1-zy-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.44940.1 /TIER=ConsEnd /STK=3 /UG=Rn.44940 /UG_TITLE=ESTs, Highly similar to BONE MORPHOGENETIC PROTEIN 6 PRECURSOR (M.musculus) AI711501 bone morphogenetic protein 6 Bmp6 25644 NM_013107 0001503 // ossification // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from expression pattern /// 0001649 // osteoblast differentiation // not recorded /// 0001654 // eye development // not recorded /// 0001822 // kidney development // not recorded /// 0001958 // endochondral ossification // not recorded /// 0006954 // inflammatory response // not recorded /// 0006955 // immune response // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from sequence or structural similarity /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // not recorded /// 0030509 // BMP signaling pathway // not recorded /// 0030539 // male genitalia development // not recorded /// 0032349 // positive regulation of aldosterone biosynthetic process // not recorded /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0040007 // growth // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // traceable author statement /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from mutant phenotype /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0051216 // cartilage development // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0060395 // SMAD protein signal transduction // not recorded /// 0060395 // SMAD protein signal transduction // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0031988 // membrane-bounded vesicle // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0070700 // BMP receptor binding // not recorded 1378828_at BE107649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107649 /DB_XREF=gi:8499754 /DB_XREF=UI-R-BT1-ame-b-08-0-UI.s1 /CLONE=UI-R-BT1-ame-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.50140.1 /TIER=ConsEnd /STK=3 /UG=Rn.50140 /UG_TITLE=ESTs BE107649 1378829_at BE107177 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107177 /DB_XREF=gi:8499282 /DB_XREF=UI-R-BS1-ayq-g-04-0-UI.s1 /CLONE=UI-R-BS1-ayq-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.51130.1 /TIER=ConsEnd /STK=3 /UG=Rn.51130 /UG_TITLE=ESTs, Weakly similar to TERA RAT TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (R.norvegicus) BE107177 Similar to spermatogenesis associated 5-like 1 LOC691729 691729 NM_001109647 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1378830_at BF386692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386692 /DB_XREF=gi:11371516 /DB_XREF=UI-R-CA1-bbg-d-03-0-UI.s1 /CLONE=UI-R-CA1-bbg-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.58765.1 /TIER=ConsEnd /STK=3 /UG=Rn.58765 /UG_TITLE=ESTs BF386692 1378831_at BE108135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108135 /DB_XREF=gi:8500240 /DB_XREF=UI-R-CA0-axa-g-10-0-UI.s1 /CLONE=UI-R-CA0-axa-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.51423.1 /TIER=ConsEnd /STK=3 /UG=Rn.51423 /UG_TITLE=ESTs BE108135 1378832_at BF389602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389602 /DB_XREF=gi:11374437 /DB_XREF=UI-R-CJ0-bfd-f-04-0-UI.s1 /CLONE=UI-R-CJ0-bfd-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.60067.1 /TIER=ConsEnd /STK=3 /UG=Rn.60067 /UG_TITLE=ESTs, Weakly similar to T20497 hypothetical protein F02D10.1 - Caenorhabditis elegans (C.elegans) BF389602 1378833_at BF387993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387993 /DB_XREF=gi:11372817 /DB_XREF=UI-R-CA1-bbx-a-12-0-UI.s1 /CLONE=UI-R-CA1-bbx-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.60092.1 /TIER=ConsEnd /STK=3 /UG=Rn.60092 /UG_TITLE=ESTs BF387993 1378834_at BE112496 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112496 /DB_XREF=gi:8504601 /DB_XREF=UI-R-BJ1-avi-d-06-0-UI.s1 /CLONE=UI-R-BJ1-avi-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.52078.1 /TIER=ConsEnd /STK=3 /UG=Rn.52078 /UG_TITLE=ESTs, Moderately similar to KU86 MOUSE ATP-DEPENDENT DNA HELICASE II, 80 KDA SUBUNIT (M.musculus) BE112496 X-ray repair complementing defective repair in Chinese hamster cells 5 Xrcc5 363247 NM_177419 0006302 // double-strand break repair // not recorded /// 0006302 // double-strand break repair // non-traceable author statement /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006303 // double-strand break repair via nonhomologous end joining // not recorded /// 0006303 // double-strand break repair via nonhomologous end joining // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0019047 // provirus integration // not recorded /// 0019059 // initiation of viral infection // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0050769 // positive regulation of neurogenesis // not recorded /// 0050769 // positive regulation of neurogenesis // inferred from electronic annotation /// 0060218 // hemopoietic stem cell differentiation // not recorded /// 0060218 // hemopoietic stem cell differentiation // inferred from electronic annotation /// 0071398 // cellular response to fatty acid // inferred from expression pattern /// 0071475 // cellular hyperosmotic salinity response // inferred from direct assay /// 0071481 // cellular response to X-ray // inferred from direct assay 0000784 // nuclear chromosome, telomeric region // not recorded /// 0000784 // nuclear chromosome, telomeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005958 // DNA-dependent protein kinase-DNA ligase 4 complex // traceable author statement /// 0043234 // protein complex // inferred from direct assay /// 0043564 // Ku70:Ku80 complex // not recorded /// 0043564 // Ku70:Ku80 complex // inferred from electronic annotation /// 0070419 // nonhomologous end joining complex // not recorded /// 0070419 // nonhomologous end joining complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003691 // double-stranded telomeric DNA binding // not recorded /// 0003691 // double-stranded telomeric DNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0042162 // telomeric DNA binding // not recorded /// 0042162 // telomeric DNA binding // inferred from electronic annotation /// 0051575 // 5'-deoxyribose-5-phosphate lyase activity // not recorded /// 0051575 // 5'-deoxyribose-5-phosphate lyase activity // inferred from electronic annotation 1378835_at AI145398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145398 /DB_XREF=gi:3667197 /DB_XREF=UI-R-BT0-qe-e-12-0-UI.s1 /CLONE=UI-R-BT0-qe-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.28459.1 /TIER=ConsEnd /STK=3 /UG=Rn.28459 /UG_TITLE=ESTs AI145398 1378836_at AW533596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533596 /DB_XREF=gi:7176010 /DB_XREF=UI-R-BU0-and-g-09-0-UI.s1 /CLONE=UI-R-BU0-and-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.48147.1 /TIER=ConsEnd /STK=3 /UG=Rn.48147 /UG_TITLE=ESTs AW533596 similar to 60S ribosomal protein L17 (L23) (Amino acid starvation-induced protein) (ASI) LOC691392 691392 XM_001075994 /// XM_002724612 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1378837_at BE103216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103216 /DB_XREF=gi:8495280 /DB_XREF=UI-R-BT1-aqx-e-08-0-UI.s1 /CLONE=UI-R-BT1-aqx-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.50486.1 /TIER=ConsEnd /STK=3 /UG=Rn.50486 /UG_TITLE=ESTs BE103216 1378838_at BF410174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410174 /DB_XREF=gi:11398149 /DB_XREF=UI-R-CA1-bju-d-03-0-UI.s1 /CLONE=UI-R-CA1-bju-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.52554.1 /TIER=ConsEnd /STK=3 /UG=Rn.52554 /UG_TITLE=ESTs BF410174 1378839_at BF403527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403527 /DB_XREF=gi:11391502 /DB_XREF=UI-R-CA1-biz-n-06-0-UI.s1 /CLONE=UI-R-CA1-biz-n-06-0-UI /FEA=EST /CNT=3 /TID=Rn.59452.1 /TIER=ConsEnd /STK=3 /UG=Rn.59452 /UG_TITLE=ESTs BF403527 1378840_at BF402541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402541 /DB_XREF=gi:11390516 /DB_XREF=UI-R-CA0-bhr-f-01-0-UI.s1 /CLONE=UI-R-CA0-bhr-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.60066.1 /TIER=ConsEnd /STK=3 /UG=Rn.60066 /UG_TITLE=ESTs BF402541 1378841_at AA899057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899057 /DB_XREF=gi:4231557 /DB_XREF=UI-R-E0-bz-c-01-0-UI.s2 /CLONE=UI-R-E0-bz-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.6475.1 /TIER=ConsEnd /STK=3 /UG=Rn.6475 /UG_TITLE=ESTs AA899057 similar to CG16812-PA RGD1307554 292739 NM_001109664 1378842_at AI102520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102520 /DB_XREF=gi:3707280 /DB_XREF=EST211809 /CLONE=REMBO72 /FEA=EST /CNT=3 /TID=Rn.1641.1 /TIER=ConsEnd /STK=3 /UG=Rn.1641 /UG_TITLE=ESTs, Weakly similar to ganglioside expression factor 2 (Rattus norvegicus) (R.norvegicus) AI102520 GABA(A) receptor-associated protein like 1 Gabarapl1 689161 NM_001044294 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005776 // autophagic vacuole // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1378843_at AW528827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528827 /DB_XREF=gi:7171241 /DB_XREF=UI-R-BT1-akj-b-02-0-UI.s1 /CLONE=UI-R-BT1-akj-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.47022.1 /TIER=ConsEnd /STK=3 /UG=Rn.47022 /UG_TITLE=ESTs AW528827 1378844_at BE120931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120931 /DB_XREF=gi:8513036 /DB_XREF=UI-R-CA0-baf-b-08-0-UI.s1 /CLONE=UI-R-CA0-baf-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.53685.1 /TIER=ConsEnd /STK=3 /UG=Rn.53685 /UG_TITLE=ESTs BE120931 1378845_at BF418781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418781 /DB_XREF=gi:11406770 /DB_XREF=UI-R-BJ2-bql-h-08-0-UI.s1 /CLONE=UI-R-BJ2-bql-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.61889.1 /TIER=ConsEnd /STK=3 /UG=Rn.61889 /UG_TITLE=ESTs, Highly similar to AAKC_HUMAN 5-AMP-ACTIVATED PROTEIN KINASE, BETA-2 SUBUNIT (H.sapiens) BF418781 Protein kinase, AMP-activated, beta 2 non-catalytic subunit Prkab2 64562 NM_022627 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0046320 // regulation of fatty acid oxidation // not recorded 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005952 // cAMP-dependent protein kinase complex // inferred from direct assay /// 0031588 // AMP-activated protein kinase complex // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction 1378846_at BF387240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387240 /DB_XREF=gi:11372064 /DB_XREF=UI-R-CA1-bbl-b-11-0-UI.s1 /CLONE=UI-R-CA1-bbl-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.63604.1 /TIER=ConsEnd /STK=3 /UG=Rn.63604 /UG_TITLE=ESTs BF387240 1378847_x_at BI284313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284313 /DB_XREF=gi:14936876 /DB_XREF=UI-R-CX0s-ccq-f-09-0-UI.s1 /CLONE=UI-R-CX0s-ccq-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.44700.1 /TIER=ConsEnd /STK=3 /UG=Rn.44700 /UG_TITLE=ESTs BI284313 H2A histone family, member X H2afx 500987 NM_001109291 0000077 // DNA damage checkpoint // not recorded /// 0000724 // double-strand break repair via homologous recombination // not recorded /// 0006281 // DNA repair // not recorded /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0007283 // spermatogenesis // not recorded /// 0007569 // cell aging // not recorded 0000781 // chromosome, telomeric region // not recorded /// 0000785 // chromatin // not recorded /// 0000786 // nucleosome // inferred from electronic annotation /// 0000790 // nuclear chromatin // not recorded /// 0001673 // male germ cell nucleus // not recorded /// 0001741 // XY body // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005657 // replication fork // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0019899 // enzyme binding // not recorded /// 0042393 // histone binding // not recorded 1378848_at AI169831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169831 /DB_XREF=gi:3709871 /DB_XREF=EST215734 /CLONE=RLIAT79 /FEA=EST /CNT=3 /TID=Rn.54639.1 /TIER=ConsEnd /STK=3 /UG=Rn.54639 /UG_TITLE=ESTs, Weakly similar to T12477 hypothetical protein DKFZp564L0862.1 (H.sapiens) AI169831 ankyrin repeat and SOCS box-containing 5 Asb5 361187 NM_001044247 0023034 // intracellular signaling pathway // inferred from electronic annotation 1378849_at BF414619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414619 /DB_XREF=gi:11402608 /DB_XREF=UI-R-CA0-bpb-h-02-0-UI.s1 /CLONE=UI-R-CA0-bpb-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.61487.1 /TIER=ConsEnd /STK=3 /UG=Rn.61487 /UG_TITLE=ESTs BF414619 1378850_at BF410203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410203 /DB_XREF=gi:11398178 /DB_XREF=UI-R-CA1-bju-g-02-0-UI.s1 /CLONE=UI-R-CA1-bju-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.61617.1 /TIER=ConsEnd /STK=3 /UG=Rn.61617 /UG_TITLE=ESTs BF410203 1378851_at AI231803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231803 /DB_XREF=gi:3815683 /DB_XREF=EST228491 /CLONE=RHECO46 /FEA=EST /CNT=3 /TID=Rn.24601.1 /TIER=ConsEnd /STK=3 /UG=Rn.24601 /UG_TITLE=ESTs AI231803 1378852_at AI574836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI574836 /DB_XREF=gi:4544832 /DB_XREF=UI-R-G0-ud-e-11-0-UI.s1 /CLONE=UI-R-G0-ud-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.48928.1 /TIER=ConsEnd /STK=3 /UG=Rn.48928 /UG_TITLE=ESTs AI574836 1378853_at BG377853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377853 /DB_XREF=gi:13302325 /DB_XREF=UI-R-CU0-bvg-a-01-0-UI.s1 /CLONE=UI-R-CU0-bvg-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.49772.1 /TIER=ConsEnd /STK=3 /UG=Rn.49772 /UG_TITLE=ESTs BG377853 myotubularin related protein 14 Mtmr14 312634 NM_001107880 0016311 // dephosphorylation // inferred from electronic annotation 0001726 // ruffle // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0004438 // phosphatidylinositol-3-phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1378854_at BF398480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398480 /DB_XREF=gi:11383471 /DB_XREF=UI-R-BS2-bep-c-11-0-UI.s1 /CLONE=UI-R-BS2-bep-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.59092.1 /TIER=ConsEnd /STK=3 /UG=Rn.59092 /UG_TITLE=ESTs BF398480 5-methyltetrahydrofolate-homocysteine methyltransferase reductase Mtrr 290947 NM_001039003 0055114 // oxidation reduction // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0010181 // FMN binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1378855_a_at BE097672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097672 /DB_XREF=gi:8488603 /DB_XREF=UI-R-BO1-aqa-d-05-0-UI.s1 /CLONE=UI-R-BO1-aqa-d-05-0-UI /FEA=EST /CNT=5 /TID=Rn.28648.2 /TIER=ConsEnd /STK=2 /UG=Rn.28648 /UG_TITLE=ESTs BE097672 similar to transcription elongation factor A (SII)-like 3 /// hypothetical protein LOC680282 /// transcription elongation factor A (SII)-like 3 LOC679974 /// LOC680282 /// Tceal3 501628 /// 679974 /// 680282 XM_001053421 /// XM_001055134 /// XM_001056444 /// XM_002727646 /// XM_577026 1378856_at BE097672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097672 /DB_XREF=gi:8488603 /DB_XREF=UI-R-BO1-aqa-d-05-0-UI.s1 /CLONE=UI-R-BO1-aqa-d-05-0-UI /FEA=EST /CNT=5 /TID=Rn.28648.2 /TIER=ConsEnd /STK=2 /UG=Rn.28648 /UG_TITLE=ESTs BE097672 similar to transcription elongation factor A (SII)-like 3 /// transcription elongation factor A (SII)-like 3 LOC679974 /// Tceal3 501628 /// 679974 XM_001053421 /// XM_001055134 /// XM_577026 1378857_at AI716196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716196 /DB_XREF=gi:5033449 /DB_XREF=UI-R-Y0-abl-g-01-0-UI.s2 /CLONE=UI-R-Y0-abl-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.28648.1 /TIER=ConsEnd /STK=3 /UG=Rn.28648 /UG_TITLE=ESTs AI716196 hypothetical protein LOC680282 LOC680282 680282 XM_001056444 /// XM_002727646 1378858_at BF400182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400182 /DB_XREF=gi:11385193 /DB_XREF=UI-R-CA1-bjc-i-24-0-UI.s1 /CLONE=UI-R-CA1-bjc-i-24-0-UI /FEA=EST /CNT=3 /TID=Rn.59560.1 /TIER=ConsEnd /STK=3 /UG=Rn.59560 /UG_TITLE=ESTs BF400182 1378859_at AI058446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058446 /DB_XREF=gi:3332223 /DB_XREF=UI-R-C1-kn-g-09-0-UI.s1 /CLONE=UI-R-C1-kn-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.18878.1 /TIER=ConsEnd /STK=3 /UG=Rn.18878 /UG_TITLE=ESTs AI058446 aristaless-like homeobox 3 Alx3 365900 NM_001007012 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0035115 // embryonic forelimb morphogenesis // inferred from electronic annotation /// 0035115 // embryonic forelimb morphogenesis // not recorded /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1378860_at AW525986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525986 /DB_XREF=gi:7168371 /DB_XREF=UI-R-BO1-aiy-a-03-0-UI.s1 /CLONE=UI-R-BO1-aiy-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.46054.1 /TIER=ConsEnd /STK=3 /UG=Rn.46054 /UG_TITLE=ESTs AW525986 1378861_at BE105498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105498 /DB_XREF=gi:8497600 /DB_XREF=UI-R-BX0-arv-e-03-0-UI.s1 /CLONE=UI-R-BX0-arv-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.46219.1 /TIER=ConsEnd /STK=3 /UG=Rn.46219 /UG_TITLE=ESTs BE105498 1378862_at BF391842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391842 /DB_XREF=gi:11376697 /DB_XREF=UI-R-CA1-bcy-c-04-0-UI.s1 /CLONE=UI-R-CA1-bcy-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.57657.1 /TIER=ConsEnd /STK=3 /UG=Rn.57657 /UG_TITLE=ESTs BF391842 1378863_at BF412077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412077 /DB_XREF=gi:11400066 /DB_XREF=UI-R-BT1-bmy-d-01-0-UI.s1 /CLONE=UI-R-BT1-bmy-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.16215.1 /TIER=ConsEnd /STK=3 /UG=Rn.16215 /UG_TITLE=ESTs BF412077 1378864_at BE103187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103187 /DB_XREF=gi:8495251 /DB_XREF=UI-R-BT1-aqx-b-09-0-UI.s1 /CLONE=UI-R-BT1-aqx-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.46210.1 /TIER=ConsEnd /STK=3 /UG=Rn.46210 /UG_TITLE=ESTs BE103187 leucine rich repeat containing 23 Lrrc23 312707 NM_001013165 0005515 // protein binding // inferred from electronic annotation 1378865_at AW253888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253888 /DB_XREF=gi:6597479 /DB_XREF=UI-R-BJ0-aec-e-10-0-UI.s1 /CLONE=UI-R-BJ0-aec-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.40734.1 /TIER=ConsEnd /STK=3 /UG=Rn.40734 /UG_TITLE=ESTs AW253888 1378866_at BF401176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401176 /DB_XREF=gi:11389151 /DB_XREF=UI-R-CA0-bgj-e-04-0-UI.s1 /CLONE=UI-R-CA0-bgj-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.59742.1 /TIER=ConsEnd /STK=3 /UG=Rn.59742 /UG_TITLE=ESTs BF401176 1378867_at BG374639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374639 /DB_XREF=gi:13299111 /DB_XREF=UI-R-CV1-bta-f-09-0-UI.s1 /CLONE=UI-R-CV1-bta-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.18432.1 /TIER=ConsEnd /STK=3 /UG=Rn.18432 /UG_TITLE=ESTs BG374639 1378868_at BE096173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096173 /DB_XREF=gi:8487104 /DB_XREF=UI-R-BU0-apj-h-02-0-UI.s1 /CLONE=UI-R-BU0-apj-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.23541.1 /TIER=ConsEnd /STK=3 /UG=Rn.23541 /UG_TITLE=ESTs BE096173 protein kinase-like protein SgK196 Sgk196 306549 NM_001024883 0006468 // protein phosphorylation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1378869_at BF413327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413327 /DB_XREF=gi:11401316 /DB_XREF=UI-R-BT1-bnw-f-08-0-UI.s1 /CLONE=UI-R-BT1-bnw-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.53550.1 /TIER=ConsEnd /STK=3 /UG=Rn.53550 /UG_TITLE=ESTs BF413327 1378870_at BF388495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388495 /DB_XREF=gi:11373319 /DB_XREF=UI-R-CA1-bda-b-12-0-UI.s1 /CLONE=UI-R-CA1-bda-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.57922.1 /TIER=ConsEnd /STK=3 /UG=Rn.57922 /UG_TITLE=ESTs BF388495 1378871_at AA924656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924656 /DB_XREF=gi:4235847 /DB_XREF=UI-R-A1-dz-c-12-0-UI.s1 /CLONE=UI-R-A1-dz-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.15364.1 /TIER=ConsEnd /STK=3 /UG=Rn.15364 /UG_TITLE=ESTs, Highly similar to T00027 brain-specific angiogenesis inhibitor 2 (H.sapiens) AA924656 brain-specific angiogenesis inhibitor 2 Bai2 313058 NM_001107914 0007165 // signal transduction // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007422 // peripheral nervous system development // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0016527 // brain-specific angiogenesis inhibitor activity // inferred from electronic annotation /// 0016527 // brain-specific angiogenesis inhibitor activity // not recorded 1378872_at AA819151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819151 /DB_XREF=gi:4227813 /DB_XREF=UI-R-A0-ba-d-07-0-UI.s1 /CLONE=UI-R-A0-ba-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.16618.1 /TIER=ConsEnd /STK=3 /UG=Rn.16618 /UG_TITLE=ESTs AA819151 1378873_at AI145933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145933 /DB_XREF=gi:3667732 /DB_XREF=UI-R-BT0-qc-b-10-0-UI.s1 /CLONE=UI-R-BT0-qc-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.28669.1 /TIER=ConsEnd /STK=3 /UG=Rn.28669 /UG_TITLE=ESTs, Weakly similar to JH0159 histone H1d - rat (R.norvegicus) AI145933 histone linker H1 domain, spermatid-specific 1 Hils1 690026 NM_001109565 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006342 // chromatin silencing // not recorded /// 0007281 // germ cell development // not recorded /// 0007283 // spermatogenesis // not recorded /// 0030261 // chromosome condensation // not recorded 0000786 // nucleosome // inferred from electronic annotation /// 0000786 // nucleosome // not recorded /// 0001673 // male germ cell nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0042393 // histone binding // not recorded 1378874_at AI012076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012076 /DB_XREF=gi:4133560 /DB_XREF=EST206527 /CLONE=RPLAS36 /FEA=EST /CNT=3 /TID=Rn.30657.1 /TIER=ConsEnd /STK=3 /UG=Rn.30657 /UG_TITLE=ESTs AI012076 cyclin dependent kinase 2 Cdk2 362817 NM_199501 0006260 // DNA replication // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006813 // potassium ion transport // not recorded /// 0007049 // cell cycle // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded /// 0009636 // response to toxin // inferred from expression pattern /// 0031100 // organ regeneration // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0045941 // positive regulation of transcription // not recorded /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0051301 // cell division // inferred from electronic annotation /// 0051591 // response to cAMP // inferred from direct assay /// 0051602 // response to electrical stimulus // inferred from direct assay 0000307 // cyclin-dependent protein kinase holoenzyme complex // not recorded /// 0000781 // chromosome, telomeric region // not recorded /// 0000793 // condensed chromosome // not recorded /// 0000805 // X chromosome // not recorded /// 0000806 // Y chromosome // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // inferred from direct assay /// 0004693 // cyclin-dependent protein kinase activity // not recorded /// 0004693 // cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0035173 // histone kinase activity // not recorded /// 0042802 // identical protein binding // not recorded 1378875_a_at AW522817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522817 /DB_XREF=gi:7165202 /DB_XREF=UI-R-BO0-ahn-b-04-0-UI.s1 /CLONE=UI-R-BO0-ahn-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.40585.1 /TIER=ConsEnd /STK=3 /UG=Rn.40585 /UG_TITLE=ESTs AW522817 similar to RIKEN cDNA 2610110G12 RGD1303066 361789 NM_212498 1378876_at BE114024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114024 /DB_XREF=gi:8506129 /DB_XREF=UI-R-CA0-axn-b-09-0-UI.s1 /CLONE=UI-R-CA0-axn-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.46619.1 /TIER=ConsEnd /STK=3 /UG=Rn.46619 /UG_TITLE=ESTs BE114024 1378877_at AA899711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899711 /DB_XREF=gi:4232208 /DB_XREF=UI-R-E0-dg-b-08-0-UI.s1 /CLONE=UI-R-E0-dg-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.8610.1 /TIER=ConsEnd /STK=3 /UG=Rn.8610 /UG_TITLE=ESTs AA899711 1378878_at AI145106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145106 /DB_XREF=gi:3666905 /DB_XREF=UI-R-BT0-px-c-09-0-UI.s1 /CLONE=UI-R-BT0-px-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.24384.1 /TIER=ConsEnd /STK=3 /UG=Rn.24384 /UG_TITLE=ESTs AI145106 similar to hypothetical protein FLJ25530 RGD1306811 300517 XM_002727034 /// XM_002729891 1378879_at BI299790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299790 /DB_XREF=gi:14976070 /DB_XREF=UI-R-CV2-chx-c-08-0-UI.s1 /CLONE=UI-R-CV2-chx-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.79077.1 /TIER=ConsEnd /STK=3 /UG=Rn.79077 /UG_TITLE=ESTs BI299790 1378880_at AW532591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532591 /DB_XREF=gi:7175045 /DB_XREF=UI-R-BS0-amk-c-01-0-UI.s1 /CLONE=UI-R-BS0-amk-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.16540.1 /TIER=ConsEnd /STK=3 /UG=Rn.16540 /UG_TITLE=ESTs AW532591 1378881_at BE098303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098303 /DB_XREF=gi:8490166 /DB_XREF=UI-R-BJ1-asy-b-03-0-UI.s1 /CLONE=UI-R-BJ1-asy-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.48904.1 /TIER=ConsEnd /STK=3 /UG=Rn.48904 /UG_TITLE=ESTs, Weakly similar to IGEB MOUSE IGE-BINDING PROTEIN (M.musculus) BE098303 1378882_at BF418273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418273 /DB_XREF=gi:11406262 /DB_XREF=UI-R-CA0-bmd-a-05-0-UI.s1 /CLONE=UI-R-CA0-bmd-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.63389.1 /TIER=ConsEnd /STK=3 /UG=Rn.63389 /UG_TITLE=ESTs BF418273 1378883_at AI502759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502759 /DB_XREF=gi:4400610 /DB_XREF=UI-R-C1-lc-a-01-0-UI.s1 /CLONE=UI-R-C1-lc-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.35480.1 /TIER=ConsEnd /STK=3 /UG=Rn.35480 /UG_TITLE=ESTs AI502759 1378884_at BF409365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409365 /DB_XREF=gi:11397340 /DB_XREF=UI-R-CA1-blf-b-12-0-UI.s1 /CLONE=UI-R-CA1-blf-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.50875.1 /TIER=ConsEnd /STK=3 /UG=Rn.50875 /UG_TITLE=ESTs BF409365 1378885_at BF386920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386920 /DB_XREF=gi:11371744 /DB_XREF=UI-R-CA1-bbj-b-03-0-UI.s1 /CLONE=UI-R-CA1-bbj-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.60231.1 /TIER=ConsEnd /STK=3 /UG=Rn.60231 /UG_TITLE=ESTs BF386920 1378886_x_at BE102928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102928 /DB_XREF=gi:8495027 /DB_XREF=UI-R-BT1-aqu-b-06-0-UI.s1 /CLONE=UI-R-BT1-aqu-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.64378.1 /TIER=ConsEnd /STK=3 /UG=Rn.64378 /UG_TITLE=ESTs BE102928 spectrin repeat containing, nuclear envelope 1 Syne1 499010 NM_001029909 0007030 // Golgi organization // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0009416 // response to light stimulus // inferred from expression pattern /// 0040023 // establishment of nucleus localization // not recorded /// 0042692 // muscle cell differentiation // not recorded /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from mutant phenotype /// 0048814 // regulation of dendrite morphogenesis // inferred from mutant phenotype /// 0090286 // cytoskeletal anchoring at nuclear membrane // not recorded /// 0090292 // nuclear matrix anchoring at nuclear membrane // not recorded 0005635 // nuclear envelope // inferred from direct assay /// 0005635 // nuclear envelope // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005819 // spindle // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0030017 // sarcomere // not recorded /// 0030496 // midbody // inferred from direct assay /// 0034993 // SUN-KASH complex // not recorded /// 0043197 // dendritic spine // inferred from direct assay /// 0045211 // postsynaptic membrane // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005198 // structural molecule activity // traceable author statement /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005521 // lamin binding // not recorded 1378887_at AW522786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522786 /DB_XREF=gi:7165171 /DB_XREF=UI-R-BO0-ahk-g-06-0-UI.s1 /CLONE=UI-R-BO0-ahk-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.32437.1 /TIER=ConsEnd /STK=3 /UG=Rn.32437 /UG_TITLE=ESTs AW522786 1378888_at BF397954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397954 /DB_XREF=gi:11382939 /DB_XREF=UI-R-BS2-bef-e-12-0-UI.s1 /CLONE=UI-R-BS2-bef-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.32730.1 /TIER=ConsEnd /STK=3 /UG=Rn.32730 /UG_TITLE=ESTs BF397954 1378889_at BF389287 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389287 /DB_XREF=gi:11374112 /DB_XREF=UI-R-BS2-bdm-a-03-0-UI.s1 /CLONE=UI-R-BS2-bdm-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.20184.1 /TIER=ConsEnd /STK=3 /UG=Rn.20184 /UG_TITLE=ESTs BF389287 1378890_at BF408090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408090 /DB_XREF=gi:11396065 /DB_XREF=UI-R-BJ2-bqz-f-02-0-UI.s1 /CLONE=UI-R-BJ2-bqz-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.33007.1 /TIER=ConsEnd /STK=3 /UG=Rn.33007 /UG_TITLE=ESTs BF408090 1378891_at AI578222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578222 /DB_XREF=gi:4562598 /DB_XREF=UI-R-G0-ui-b-09-0-UI.s2 /CLONE=UI-R-G0-ui-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.44914.1 /TIER=ConsEnd /STK=3 /UG=Rn.44914 /UG_TITLE=ESTs AI578222 Kinesin family member 3C Kif3c 85248 NM_053486 0007018 // microtubule-based movement // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1378892_at BF564915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564915 /DB_XREF=gi:11674645 /DB_XREF=UI-R-BU0-ana-f-06-0-UI.r1 /CLONE=UI-R-BU0-ana-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.44965.1 /TIER=ConsEnd /STK=3 /UG=Rn.44965 /UG_TITLE=ESTs BF564915 1378893_at BF410387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410387 /DB_XREF=gi:11398362 /DB_XREF=UI-R-CA1-bjw-h-07-0-UI.s1 /CLONE=UI-R-CA1-bjw-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.61687.1 /TIER=ConsEnd /STK=3 /UG=Rn.61687 /UG_TITLE=ESTs BF410387 1378894_at BF404048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404048 /DB_XREF=gi:11392023 /DB_XREF=UI-R-CA1-bjd-m-22-0-UI.s1 /CLONE=UI-R-CA1-bjd-m-22-0-UI /FEA=EST /CNT=3 /TID=Rn.64258.1 /TIER=ConsEnd /STK=3 /UG=Rn.64258 /UG_TITLE=ESTs BF404048 1378895_at AI073050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073050 /DB_XREF=gi:3399244 /DB_XREF=UI-R-Y0-lx-c-02-0-UI.s1 /CLONE=UI-R-Y0-lx-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.21840.1 /TIER=ConsEnd /STK=3 /UG=Rn.21840 /UG_TITLE=ESTs AI073050 coiled-coil domain containing 155 Ccdc155 308581 XR_085715 /// XR_086125 0005509 // calcium ion binding // inferred from electronic annotation 1378896_at BI277879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277879 /DB_XREF=gi:14924181 /DB_XREF=UI-R-CX0-bxk-f-04-0-UI.s1 /CLONE=UI-R-CX0-bxk-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.42074.1 /TIER=ConsEnd /STK=3 /UG=Rn.42074 /UG_TITLE=ESTs BI277879 solute carrier family 30 (zinc transporter), member 2 Slc30a2 25362 NM_001083122 /// NM_012890 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006829 // zinc ion transport // inferred from direct assay /// 0006829 // zinc ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0061090 // positive regulation of sequestering of zinc ion // not recorded 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0010008 // endosome membrane // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0044444 // cytoplasmic part // not recorded 0005385 // zinc ion transmembrane transporter activity // not recorded /// 0005385 // zinc ion transmembrane transporter activity // inferred from direct assay /// 0008324 // cation transmembrane transporter activity // inferred from electronic annotation 1378897_at BE110397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110397 /DB_XREF=gi:8502502 /DB_XREF=UI-R-BJ1-aun-e-05-0-UI.s1 /CLONE=UI-R-BJ1-aun-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.42130.1 /TIER=ConsEnd /STK=3 /UG=Rn.42130 /UG_TITLE=ESTs BE110397 downstream of Stk11 Dos 314622 NM_001108070 1378898_at BE109293 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109293 /DB_XREF=gi:8501398 /DB_XREF=UI-R-BJ1-auq-b-10-0-UI.s1 /CLONE=UI-R-BJ1-auq-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.52585.1 /TIER=ConsEnd /STK=3 /UG=Rn.52585 /UG_TITLE=ESTs BE109293 1378899_at BE108523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108523 /DB_XREF=gi:8500628 /DB_XREF=UI-R-CA0-axf-c-04-0-UI.s1 /CLONE=UI-R-CA0-axf-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.51511.1 /TIER=ConsEnd /STK=3 /UG=Rn.51511 /UG_TITLE=ESTs BE108523 solute carrier family 35, member D3 Slc35d3 308717 NM_001107522 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1378900_at BF415195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415195 /DB_XREF=gi:11403184 /DB_XREF=UI-R-BJ2-boz-a-11-0-UI.s1 /CLONE=UI-R-BJ2-boz-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.53502.1 /TIER=ConsEnd /STK=3 /UG=Rn.53502 /UG_TITLE=ESTs BF415195 K(lysine) acetyltransferase 2A Kat2a 303539 NM_001107050 0001701 // in utero embryonic development // not recorded /// 0001756 // somitogenesis // not recorded /// 0001843 // neural tube closure // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0016573 // histone acetylation // inferred from electronic annotation /// 0016578 // histone deubiquitination // not recorded /// 0021537 // telencephalon development // not recorded /// 0022037 // metencephalon development // not recorded /// 0030901 // midbrain development // not recorded /// 0035264 // multicellular organism growth // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0043966 // histone H3 acetylation // not recorded /// 0043983 // histone H4-K12 acetylation // not recorded /// 0044154 // histone H3-K14 acetylation // not recorded 0000123 // histone acetyltransferase complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0030914 // STAGA complex // not recorded /// 0033276 // transcription factor TFTC complex // not recorded 0003682 // chromatin binding // not recorded /// 0003713 // transcription coactivator activity // not recorded /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0010484 // H3 histone acetyltransferase activity // not recorded /// 0042826 // histone deacetylase binding // not recorded /// 0043997 // histone acetyltransferase activity (H4-K12 specific) // not recorded 1378901_at AI070883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070883 /DB_XREF=gi:3397134 /DB_XREF=UI-R-C2-ms-f-05-0-UI.s1 /CLONE=UI-R-C2-ms-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.22603.1 /TIER=ConsEnd /STK=3 /UG=Rn.22603 /UG_TITLE=ESTs AI070883 1378902_at BF413695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413695 /DB_XREF=gi:11401684 /DB_XREF=UI-R-CA0-boh-d-11-0-UI.s1 /CLONE=UI-R-CA0-boh-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.39110.1 /TIER=ConsEnd /STK=3 /UG=Rn.39110 /UG_TITLE=ESTs BF413695 tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) Tyw1 304423 NM_001107137 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0010181 // FMN binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation 1378903_at AI712467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712467 /DB_XREF=gi:5016267 /DB_XREF=UI-R-AF1-aaw-h-03-0-UI.s1 /CLONE=UI-R-AF1-aaw-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.44745.1 /TIER=ConsEnd /STK=3 /UG=Rn.44745 /UG_TITLE=ESTs AI712467 1378904_at AW529244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529244 /DB_XREF=gi:7171658 /DB_XREF=UI-R-BT1-akd-f-09-0-UI.s1 /CLONE=UI-R-BT1-akd-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.44848.1 /TIER=ConsEnd /STK=3 /UG=Rn.44848 /UG_TITLE=ESTs, Weakly similar to AF158025 1 cationic amino acid transporter-2A (R.norvegicus) AW529244 solute carrier family 7 (cationic amino acid transporter, y+ system), member 14 Slc7a14 499587 NM_001134615 0006865 // amino acid transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation 1378905_at BF557456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557456 /DB_XREF=gi:11667186 /DB_XREF=UI-R-E1-gd-c-04-0-UI.r1 /CLONE=UI-R-E1-gd-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.39842.1 /TIER=ConsEnd /STK=3 /UG=Rn.39842 /UG_TITLE=ESTs BF557456 peroxisomal biogenesis factor 1 Pex1 500006 NM_001109220 0006625 // protein targeting to peroxisome // not recorded /// 0007031 // peroxisome organization // inferred from electronic annotation /// 0007031 // peroxisome organization // not recorded /// 0016558 // protein import into peroxisome matrix // not recorded /// 0060152 // microtubule-based peroxisome localization // not recorded 0005737 // cytoplasm // not recorded /// 0005777 // peroxisome // inferred from electronic annotation /// 0005777 // peroxisome // not recorded /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0032403 // protein complex binding // not recorded /// 0042623 // ATPase activity, coupled // not recorded 1378906_at BE098141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098141 /DB_XREF=gi:8490045 /DB_XREF=UI-R-BJ1-ata-g-08-0-UI.s1 /CLONE=UI-R-BJ1-ata-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.14573.1 /TIER=ConsEnd /STK=3 /UG=Rn.14573 /UG_TITLE=ESTs BE098141 similar to hypothetical protein FLJ25416 RGD1559690 499204 NM_001126294 1378907_at AI454868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454868 /DB_XREF=gi:4296735 /DB_XREF=UI-R-C2p-ql-b-01-0-UI.s1 /CLONE=UI-R-C2p-ql-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.35133.1 /TIER=ConsEnd /STK=3 /UG=Rn.35133 /UG_TITLE=ESTs AI454868 rCG31687-like LOC100361376 100361376 XM_002729875 /// XM_002729876 1378908_at BF386667 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386667 /DB_XREF=gi:11371491 /DB_XREF=UI-R-CA1-bbg-a-12-0-UI.s1 /CLONE=UI-R-CA1-bbg-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.57990.1 /TIER=ConsEnd /STK=3 /UG=Rn.57990 /UG_TITLE=ESTs BF386667 mitochondrial ribosomal protein S24 Mrps24 498406 NM_001077659 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378909_at BE120180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120180 /DB_XREF=gi:8512285 /DB_XREF=UI-R-CA0-bap-e-03-0-UI.s1 /CLONE=UI-R-CA0-bap-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.45245.1 /TIER=ConsEnd /STK=3 /UG=Rn.45245 /UG_TITLE=ESTs BE120180 1378910_at BG378480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378480 /DB_XREF=gi:13302952 /DB_XREF=UI-R-CU0-bvj-f-05-0-UI.s1 /CLONE=UI-R-CU0-bvj-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.62601.1 /TIER=ConsEnd /STK=3 /UG=Rn.62601 /UG_TITLE=ESTs BG378480 1378911_at BF404615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404615 /DB_XREF=gi:11392590 /DB_XREF=UI-R-CA1-bih-f-02-0-UI.s1 /CLONE=UI-R-CA1-bih-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.61730.1 /TIER=ConsEnd /STK=3 /UG=Rn.61730 /UG_TITLE=ESTs BF404615 1378912_at BG376091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376091 /DB_XREF=gi:13300563 /DB_XREF=UI-R-CT0-bum-d-08-0-UI.s1 /CLONE=UI-R-CT0-bum-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.15459.1 /TIER=ConsEnd /STK=3 /UG=Rn.15459 /UG_TITLE=ESTs BG376091 anaphase promoting complex subunit 1 Anapc1 311412 NM_001107771 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070979 // protein K11-linked ubiquitination // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005680 // anaphase-promoting complex // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded 1378913_at BF419415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419415 /DB_XREF=gi:11407404 /DB_XREF=UI-R-CA1-bnr-d-08-0-UI.s1 /CLONE=UI-R-CA1-bnr-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.51711.1 /TIER=ConsEnd /STK=3 /UG=Rn.51711 /UG_TITLE=ESTs BF419415 1378914_a_at AI059468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059468 /DB_XREF=gi:3333245 /DB_XREF=UI-R-C1-lg-c-01-0-UI.s1 /CLONE=UI-R-C1-lg-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.13682.1 /TIER=ConsEnd /STK=3 /UG=Rn.13682 /UG_TITLE=ESTs AI059468 hypothetical protein LOC308990 LOC308990 308990 NM_001025001 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1378915_x_at AI059468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059468 /DB_XREF=gi:3333245 /DB_XREF=UI-R-C1-lg-c-01-0-UI.s1 /CLONE=UI-R-C1-lg-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.13682.1 /TIER=ConsEnd /STK=3 /UG=Rn.13682 /UG_TITLE=ESTs AI059468 hypothetical protein LOC308990 LOC308990 308990 NM_001025001 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1378916_at AI029234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029234 /DB_XREF=gi:4297153 /DB_XREF=UI-R-C0-iv-a-06-0-UI.s1 /CLONE=UI-R-C0-iv-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.18183.1 /TIER=ConsEnd /STK=3 /UG=Rn.18183 /UG_TITLE=ESTs AI029234 ring finger protein 43 Rnf43 303412 NM_001135921 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378917_at BF406470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406470 /DB_XREF=gi:11394445 /DB_XREF=UI-R-BJ2-bpt-c-09-0-UI.s1 /CLONE=UI-R-BJ2-bpt-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.44910.1 /TIER=ConsEnd /STK=3 /UG=Rn.44910 /UG_TITLE=ESTs BF406470 REX1, RNA exonuclease 1 homolog (S. cerevisiae) Rexo1 314630 NM_001012114 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation 1378918_at AI071712 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071712 /DB_XREF=gi:3397927 /DB_XREF=UI-R-C2-nc-e-10-0-UI.s1 /CLONE=UI-R-C2-nc-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.33489.1 /TIER=ConsEnd /STK=3 /UG=Rn.33489 /UG_TITLE=ESTs AI071712 1378919_at BE329217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329217 /DB_XREF=gi:9202993 /DB_XREF=hq38d10.x1 /CLONE=IMAGE:3121651 /FEA=EST /CNT=3 /TID=Rn.44780.1 /TIER=ConsEnd /STK=3 /UG=Rn.44780 /UG_TITLE=ESTs, Weakly similar to MITF_RAT Microphthalmia-associated transcription factor (R.norvegicus) BE329217 Transcription factor E3 Tcfe3 317376 XM_002727531 /// XM_002730205 /// XM_228760 0006959 // humoral immune response // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0045670 // regulation of osteoclast differentiation // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1378920_at BE095832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095832 /DB_XREF=gi:8486763 /DB_XREF=UI-R-BU0-apb-a-12-0-UI.s1 /CLONE=UI-R-BU0-apb-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.48970.1 /TIER=ConsEnd /STK=3 /UG=Rn.48970 /UG_TITLE=ESTs BE095832 1378921_at BF407470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407470 /DB_XREF=gi:11395450 /DB_XREF=UI-R-BJ2-bqs-f-11-0-UI.s1 /CLONE=UI-R-BJ2-bqs-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.16830.1 /TIER=ConsEnd /STK=3 /UG=Rn.16830 /UG_TITLE=ESTs BF407470 1378922_at BF564279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564279 /DB_XREF=gi:11674009 /DB_XREF=UI-R-C4-alm-a-11-0-UI.r1 /CLONE=UI-R-C4-alm-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.29055.1 /TIER=ConsEnd /STK=3 /UG=Rn.29055 /UG_TITLE=ESTs BF564279 YdjC homolog (bacterial) Ydjc 287938 NM_001013863 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation 1378923_at AI710577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI710577 /DB_XREF=gi:5000353 /DB_XREF=UI-R-AG1-aal-g-05-0-UI.s1 /CLONE=UI-R-AG1-aal-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.41450.1 /TIER=ConsEnd /STK=3 /UG=Rn.41450 /UG_TITLE=ESTs, Weakly similar to T13954 MEGF6 protein - rat (R.norvegicus) AI710577 scavenger receptor class F, member 2 Scarf2 287949 NM_001105864 0007157 // heterophilic cell-cell adhesion // not recorded /// 0007165 // signal transduction // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005044 // scavenger receptor activity // not recorded /// 0005515 // protein binding // not recorded 1378924_at AI233807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233807 /DB_XREF=gi:4135919 /DB_XREF=EST230495 /CLONE=RLUCR41 /FEA=EST /CNT=3 /TID=Rn.46806.1 /TIER=ConsEnd /STK=3 /UG=Rn.46806 /UG_TITLE=ESTs AI233807 Integrator complex subunit 10 Ints10 290679 NM_001134416 0016180 // snRNA processing // inferred from electronic annotation /// 0016180 // snRNA processing // not recorded 0032039 // integrator complex // inferred from electronic annotation /// 0032039 // integrator complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378925_at AW529408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529408 /DB_XREF=gi:7171822 /DB_XREF=UI-R-BT1-akf-h-09-0-UI.s1 /CLONE=UI-R-BT1-akf-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.47193.1 /TIER=ConsEnd /STK=3 /UG=Rn.47193 /UG_TITLE=ESTs AW529408 cAMP responsive element modulator Crem 25620 NM_001110860 /// NM_017334 0006006 // glucose metabolic process // inferred from expression pattern /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0006631 // fatty acid metabolic process // inferred from expression pattern /// 0006687 // glycosphingolipid metabolic process // inferred from electronic annotation /// 0006687 // glycosphingolipid metabolic process // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0019933 // cAMP-mediated signaling // traceable author statement /// 0042752 // regulation of circadian rhythm // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048384 // retinoic acid receptor signaling pathway // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1378926_at BF415792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415792 /DB_XREF=gi:11403781 /DB_XREF=UI-R-CA1-bkf-a-01-0-UI.s1 /CLONE=UI-R-CA1-bkf-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.8893.1 /TIER=ConsEnd /STK=3 /UG=Rn.8893 /UG_TITLE=ESTs BF415792 1378927_at BE329364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329364 /DB_XREF=gi:9203140 /DB_XREF=hq34e09.x1 /CLONE=IMAGE:3121288 /FEA=EST /CNT=3 /TID=Rn.27251.1 /TIER=ConsEnd /STK=3 /UG=Rn.27251 /UG_TITLE=ESTs BE329364 1378928_at BF387639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387639 /DB_XREF=gi:11372463 /DB_XREF=UI-R-CA1-bbs-f-12-0-UI.s1 /CLONE=UI-R-CA1-bbs-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.64318.1 /TIER=ConsEnd /STK=3 /UG=Rn.64318 /UG_TITLE=ESTs BF387639 Zinc finger protein 710 Znf710 293044 NM_001134563 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1378929_at BE116137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116137 /DB_XREF=gi:8508242 /DB_XREF=UI-R-BS1-axz-h-03-0-UI.s1 /CLONE=UI-R-BS1-axz-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.16728.1 /TIER=ConsEnd /STK=3 /UG=Rn.16728 /UG_TITLE=ESTs BE116137 1378930_a_at BG371548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371548 /DB_XREF=gi:13268090 /DB_XREF=UI-R-CW0-bvw-g-03-0-UI.s1 /CLONE=UI-R-CW0-bvw-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.23029.1 /TIER=ConsEnd /STK=3 /UG=Rn.23029 /UG_TITLE=ESTs BG371548 1378931_at AW523881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523881 /DB_XREF=gi:7166266 /DB_XREF=UI-R-BO0-aie-b-01-0-UI.s1 /CLONE=UI-R-BO0-aie-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.45736.1 /TIER=ConsEnd /STK=3 /UG=Rn.45736 /UG_TITLE=ESTs AW523881 1378932_at AI103196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103196 /DB_XREF=gi:4134151 /DB_XREF=EST212485 /CLONE=REMBY34 /FEA=EST /CNT=3 /TID=Rn.18046.2 /TIER=ConsEnd /STK=3 /UG=Rn.18046 /UG_TITLE=ESTs, Highly similar to SIGNAL RECOGNITION PARTICLE RECEPTOR BETA SUBUNIT (M.musculus) AI103196 Signal recognition particle receptor, B subunit Srprb 300965 NM_001013252 0006826 // iron ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0009925 // basal plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0045178 // basal part of cell // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0008199 // ferric iron binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction 1378933_at AA817909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817909 /DB_XREF=gi:4198433 /DB_XREF=UI-R-A0-af-e-10-0-UI.s1 /CLONE=UI-R-A0-af-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.25170.1 /TIER=ConsEnd /STK=3 /UG=Rn.25170 /UG_TITLE=ESTs AA817909 ISY1 splicing factor homolog (S. cerevisiae) Isy1 362394 NM_001014188 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1378934_at BE116059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116059 /DB_XREF=gi:8508164 /DB_XREF=UI-R-BS1-axz-a-04-0-UI.s1 /CLONE=UI-R-BS1-axz-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.52613.1 /TIER=ConsEnd /STK=3 /UG=Rn.52613 /UG_TITLE=ESTs, Highly similar to I49731 RNA helicase - mouse (M.musculus) BE116059 1378935_at AI235684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235684 /DB_XREF=gi:3829190 /DB_XREF=EST232246 /CLONE=ROVCV02 /FEA=EST /CNT=3 /TID=Rn.22794.1 /TIER=ConsEnd /STK=3 /UG=Rn.22794 /UG_TITLE=ESTs, Weakly similar to B39066 proline-rich protein 15 - rat (R.norvegicus) AI235684 SRY (sex determining region Y)-box 17 Sox17 312936 NM_001107902 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001706 // endoderm formation // inferred from electronic annotation /// 0001706 // endoderm formation // not recorded /// 0001947 // heart looping // inferred from electronic annotation /// 0001947 // heart looping // not recorded /// 0003151 // outflow tract morphogenesis // inferred from electronic annotation /// 0003151 // outflow tract morphogenesis // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0031648 // protein destabilization // inferred from electronic annotation /// 0031648 // protein destabilization // not recorded /// 0035050 // embryonic heart tube development // inferred from electronic annotation /// 0035050 // embryonic heart tube development // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0050821 // protein stabilization // inferred from electronic annotation /// 0050821 // protein stabilization // not recorded /// 0060214 // endocardium formation // inferred from electronic annotation /// 0060214 // endocardium formation // not recorded /// 0060912 // cardiac cell fate specification // inferred from electronic annotation /// 0060913 // cardiac cell fate determination // not recorded /// 0060956 // endocardial cell differentiation // inferred from electronic annotation /// 0060956 // endocardial cell differentiation // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded 1378936_at AW533986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533986 /DB_XREF=gi:7176400 /DB_XREF=UI-R-C4-alr-e-09-0-UI.s1 /CLONE=UI-R-C4-alr-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.28229.1 /TIER=ConsEnd /STK=3 /UG=Rn.28229 /UG_TITLE=ESTs, Highly similar to A40220 cleavage stimulation factor 64K chain (H.sapiens) AW533986 cleavage stimulation factor, 3' pre-RNA subunit 2 Cstf2 683927 NM_001131014 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1378937_at BE349836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE349836 /DB_XREF=gi:9261689 /DB_XREF=hq43g05.x1 /CLONE=IMAGE:3122168 /FEA=EST /CNT=3 /TID=Rn.20575.1 /TIER=ConsEnd /STK=3 /UG=Rn.20575 /UG_TITLE=ESTs BE349836 1378938_at AI175561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175561 /DB_XREF=gi:3726199 /DB_XREF=EST219116 /CLONE=ROVBC02 /FEA=EST /CNT=3 /TID=Rn.21541.1 /TIER=ConsEnd /STK=3 /UG=Rn.21541 /UG_TITLE=ESTs, Weakly similar to T13610 parallel sister chromatids protein - fruit fly (D.melanogaster) AI175561 hypothetical LOC290577 LOC290577 290577 XM_002725158 /// XM_002728376 0005488 // binding // inferred from electronic annotation 1378939_at BG377737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377737 /DB_XREF=gi:13302209 /DB_XREF=UI-R-CU0-bva-d-10-0-UI.s1 /CLONE=UI-R-CU0-bva-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.49607.1 /TIER=ConsEnd /STK=3 /UG=Rn.49607 /UG_TITLE=ESTs, Highly similar to CKRA_MOUSE C-C CHEMOKINE RECEPTOR TYPE 10 (C-C CKR-10) (CC-CKR-10) (CCR-10) (CHEMOKINE C-C RECEPTOR 9) (G-PROTEIN COUPLED RECEPTOR 2) (M.musculus) BG377737 chemokine (C-C motif) receptor 10 Ccr10 363682 NM_001108836 0006935 // chemotaxis // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004950 // chemokine receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0016493 // C-C chemokine receptor activity // inferred from electronic annotation /// 0016493 // C-C chemokine receptor activity // not recorded 1378940_at AI170278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170278 /DB_XREF=gi:3710318 /DB_XREF=EST216204 /CLONE=RLUCG41 /FEA=EST /CNT=3 /TID=Rn.54034.1 /TIER=ConsEnd /STK=3 /UG=Rn.54034 /UG_TITLE=ESTs AI170278 SHQ1 homolog (S. cerevisiae) Shq1 297483 NM_001134713 1378941_at AA957447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957447 /DB_XREF=gi:4277337 /DB_XREF=UI-R-E1-fy-h-05-0-UI.s1 /CLONE=UI-R-E1-fy-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.12149.1 /TIER=ConsEnd /STK=3 /UG=Rn.12149 /UG_TITLE=ESTs AA957447 1378942_at AI234028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234028 /DB_XREF=gi:3817908 /DB_XREF=EST230716 /CLONE=RLUCU28 /FEA=EST /CNT=3 /TID=Rn.24777.1 /TIER=ConsEnd /STK=3 /UG=Rn.24777 /UG_TITLE=ESTs AI234028 1378943_at AI501626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501626 /DB_XREF=gi:4399477 /DB_XREF=UI-R-C2p-sc-d-12-0-UI.s2 /CLONE=UI-R-C2p-sc-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.32115.1 /TIER=ConsEnd /STK=3 /UG=Rn.32115 /UG_TITLE=ESTs AI501626 1378944_at BE119619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119619 /DB_XREF=gi:8511724 /DB_XREF=UI-R-CA0-baz-a-07-0-UI.s1 /CLONE=UI-R-CA0-baz-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.53140.1 /TIER=ConsEnd /STK=3 /UG=Rn.53140 /UG_TITLE=ESTs BE119619 1378945_at AI638990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI638990 /DB_XREF=gi:4700024 /DB_XREF=rx01208s /CLONE=rx01208 /FEA=EST /CNT=3 /TID=Rn.57872.1 /TIER=ConsEnd /STK=3 /UG=Rn.57872 /UG_TITLE=ESTs AI638990 1378946_at BF416813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416813 /DB_XREF=gi:11404802 /DB_XREF=UI-R-CA0-bkv-c-12-0-UI.s1 /CLONE=UI-R-CA0-bkv-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.63150.1 /TIER=ConsEnd /STK=3 /UG=Rn.63150 /UG_TITLE=ESTs BF416813 1378947_at AI179390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179390 /DB_XREF=gi:4135151 /DB_XREF=EST223091 /CLONE=RSPCG56 /FEA=EST /CNT=3 /TID=Rn.23329.1 /TIER=ConsEnd /STK=3 /UG=Rn.23329 /UG_TITLE=ESTs, Weakly similar to T17293 hypothetical protein DKFZp434G162.1 (H.sapiens) AI179390 tensin 4 Tns4 303517 NM_001024881 0006915 // apoptosis // inferred from electronic annotation /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0030054 // cell junction // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378948_at AI406365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406365 /DB_XREF=gi:4249869 /DB_XREF=EST234651 /CLONE=RBRDM84 /FEA=EST /CNT=3 /TID=Rn.44060.1 /TIER=ConsEnd /STK=3 /UG=Rn.44060 /UG_TITLE=ESTs, Weakly similar to T26831 hypothetical protein Y43E12A.2 - Caenorhabditis elegans (C.elegans) AI406365 zinc finger, CCHC domain containing 24 Zcchc24 361104 NM_001108394 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378949_at BF412698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412698 /DB_XREF=gi:11400687 /DB_XREF=UI-R-BT1-bnt-b-02-0-UI.s1 /CLONE=UI-R-BT1-bnt-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.46418.1 /TIER=ConsEnd /STK=3 /UG=Rn.46418 /UG_TITLE=ESTs BF412698 endothelin-converting enzyme 2 Ece2 408243 NM_001002815 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016486 // peptide hormone processing // not recorded /// 0016486 // peptide hormone processing // traceable author statement 0030659 // cytoplasmic vesicle membrane // not recorded 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // traceable author statement /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1378950_at AI178991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178991 /DB_XREF=gi:3729629 /DB_XREF=EST222673 /CLONE=RSPCA14 /FEA=EST /CNT=3 /TID=Rn.35551.1 /TIER=ConsEnd /STK=3 /UG=Rn.35551 /UG_TITLE=ESTs AI178991 1378951_at AI233142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233142 /DB_XREF=gi:3817022 /DB_XREF=EST229830 /CLONE=RKICL39 /FEA=EST /CNT=3 /TID=Rn.37248.1 /TIER=ConsEnd /STK=3 /UG=Rn.37248 /UG_TITLE=ESTs AI233142 1378952_at H31535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31535 /DB_XREF=gi:976952 /DB_XREF=EST105653 /CLONE=RPCAP09 /FEA=EST /CNT=3 /TID=Rn.48828.1 /TIER=ConsEnd /STK=3 /UG=Rn.48828 /UG_TITLE=ESTs H31535 transmembrane protein 101 Tmem101 303564 NM_001191650 /// XM_001081505 /// XM_220940 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded 1378953_at BE096201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096201 /DB_XREF=gi:8487132 /DB_XREF=UI-R-BU0-apc-c-02-0-UI.s1 /CLONE=UI-R-BU0-apc-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.49026.1 /TIER=ConsEnd /STK=3 /UG=Rn.49026 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) BE096201 similar to Zinc finger and SCAN domain containing protein 2 (Zinc finger protein 29) RGD1559747 312310 NR_027235 1378954_at AI711116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711116 /DB_XREF=gi:5000892 /DB_XREF=UI-R-AD1-zo-c-12-0-UI.s1 /CLONE=UI-R-AD1-zo-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.41458.1 /TIER=ConsEnd /STK=3 /UG=Rn.41458 /UG_TITLE=ESTs AI711116 1378955_at BE119519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119519 /DB_XREF=gi:8511588 /DB_XREF=UI-R-CA0-bae-c-07-0-UI.s1 /CLONE=UI-R-CA0-bae-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.53257.1 /TIER=ConsEnd /STK=3 /UG=Rn.53257 /UG_TITLE=ESTs BE119519 1378956_at BF405977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405977 /DB_XREF=gi:11393952 /DB_XREF=UI-R-CA1-bje-f-13-0-UI.s1 /CLONE=UI-R-CA1-bje-f-13-0-UI /FEA=EST /CNT=3 /TID=Rn.61646.1 /TIER=ConsEnd /STK=3 /UG=Rn.61646 /UG_TITLE=ESTs BF405977 1378957_at AA849112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849112 /DB_XREF=gi:4131706 /DB_XREF=EST191879 /CLONE=RMUAB76 /FEA=EST /CNT=3 /TID=Rn.6427.1 /TIER=ConsEnd /STK=3 /UG=Rn.6427 /UG_TITLE=ESTs AA849112 Similar to ornithine decarboxylase-like protein RGD1564776 500550 1378958_at AA998314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998314 /DB_XREF=gi:4288999 /DB_XREF=UI-R-C0-ia-b-10-0-UI.s1 /CLONE=UI-R-C0-ia-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.40466.1 /TIER=ConsEnd /STK=3 /UG=Rn.40466 /UG_TITLE=ESTs AA998314 coiled-coil domain containing 86 Ccdc86 293738 NM_001006974 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 1378959_at BE096415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096415 /DB_XREF=gi:8487346 /DB_XREF=UI-R-BU0-apf-g-12-0-UI.s1 /CLONE=UI-R-BU0-apf-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.42050.1 /TIER=ConsEnd /STK=3 /UG=Rn.42050 /UG_TITLE=ESTs BE096415 1378960_at BF399697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399697 /DB_XREF=gi:11384707 /DB_XREF=UI-R-CA0-bhx-d-10-0-UI.s1 /CLONE=UI-R-CA0-bhx-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.75708.1 /TIER=ConsEnd /STK=3 /UG=Rn.75708 /UG_TITLE=ESTs BF399697 1378961_at AW523012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523012 /DB_XREF=gi:7165397 /DB_XREF=UI-R-BO0-ahm-c-09-0-UI.s1 /CLONE=UI-R-BO0-ahm-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.39320.1 /TIER=ConsEnd /STK=3 /UG=Rn.39320 /UG_TITLE=ESTs AW523012 1378962_at BM385701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385701 /DB_XREF=gi:18185754 /DB_XREF=UI-R-CN1-clx-o-13-0-UI.s1 /CLONE=UI-R-CN1-clx-o-13-0-UI /FEA=EST /CNT=3 /TID=Rn.43688.1 /TIER=ConsEnd /STK=3 /UG=Rn.43688 /UG_TITLE=ESTs BM385701 coiled-coil domain containing 45 Ccdc45 287766 NM_001013862 0005515 // protein binding // not recorded 1378963_at AA963004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963004 /DB_XREF=gi:4277975 /DB_XREF=UI-R-E1-gd-d-04-0-UI.s1 /CLONE=UI-R-E1-gd-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.12176.1 /TIER=ConsEnd /STK=3 /UG=Rn.12176 /UG_TITLE=ESTs AA963004 Transforming growth factor, beta 2 Tgfb2 81809 NM_031131 0000902 // cell morphogenesis // not recorded /// 0000902 // cell morphogenesis // inferred from sequence or structural similarity /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001502 // cartilage condensation // inferred from electronic annotation /// 0001502 // cartilage condensation // not recorded /// 0001558 // regulation of cell growth // traceable author statement /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001654 // eye development // not recorded /// 0001654 // eye development // inferred from sequence or structural similarity /// 0001666 // response to hypoxia // not recorded /// 0001822 // kidney development // inferred from expression pattern /// 0001837 // epithelial to mesenchymal transition // not recorded /// 0001942 // hair follicle development // not recorded /// 0001942 // hair follicle development // inferred from sequence or structural similarity /// 0001942 // hair follicle development // inferred from electronic annotation /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0001974 // blood vessel remodeling // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006924 // activation-induced cell death of T cells // inferred from electronic annotation /// 0006924 // activation-induced cell death of T cells // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007184 // SMAD protein nuclear translocation // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007435 // salivary gland morphogenesis // not recorded /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from sequence or structural similarity /// 0007507 // heart development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from expression pattern /// 0007565 // female pregnancy // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008219 // cell death // not recorded /// 0008219 // cell death // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0008347 // glial cell migration // not recorded /// 0009314 // response to radiation // inferred from expression pattern /// 0009409 // response to cold // inferred from expression pattern /// 0009611 // response to wounding // not recorded /// 0010002 // cardioblast differentiation // not recorded /// 0010002 // cardioblast differentiation // inferred from sequence or structural similarity /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010634 // positive regulation of epithelial cell migration // not recorded /// 0010693 // negative regulation of alkaline phosphatase activity // not recorded /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0016049 // cell growth // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0022601 // menstrual cycle phase // not recorded /// 0030097 // hemopoiesis // not recorded /// 0030097 // hemopoiesis // inferred from sequence or structural similarity /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030199 // collagen fibril organization // not recorded /// 0030307 // positive regulation of cell growth // not recorded /// 0030307 // positive regulation of cell growth // inferred from sequence or structural similarity /// 0030308 // negative regulation of cell growth // not recorded /// 0030324 // lung development // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030593 // neutrophil chemotaxis // inferred from sequence or structural similarity /// 0030878 // thyroid gland development // inferred from expression pattern /// 0030902 // hindbrain development // inferred from expression pattern /// 0031016 // pancreas development // inferred from expression pattern /// 0031069 // hair follicle morphogenesis // not recorded /// 0031069 // hair follicle morphogenesis // inferred from sequence or structural similarity /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0032147 // activation of protein kinase activity // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032570 // response to progesterone stimulus // not recorded /// 0032874 // positive regulation of stress-activated MAPK cascade // not recorded /// 0032909 // regulation of transforming growth factor-beta2 production // not recorded /// 0033280 // response to vitamin D // inferred from expression pattern /// 0033630 // positive regulation of cell adhesion mediated by integrin // not recorded /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0034616 // response to laminar fluid shear stress // inferred from expression pattern /// 0040007 // growth // inferred from electronic annotation /// 0042060 // wound healing // inferred from expression pattern /// 0042060 // wound healing // inferred from mutant phenotype /// 0042060 // wound healing // inferred from sequence or structural similarity /// 0042127 // regulation of cell proliferation // traceable author statement /// 0042416 // dopamine biosynthetic process // not recorded /// 0042416 // dopamine biosynthetic process // inferred from sequence or structural similarity /// 0042416 // dopamine biosynthetic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042637 // catagen // not recorded /// 0042637 // catagen // inferred from sequence or structural similarity /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0043525 // positive regulation of neuron apoptosis // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from sequence or structural similarity /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0045216 // cell-cell junction organization // not recorded /// 0045726 // positive regulation of integrin biosynthetic process // not recorded /// 0045778 // positive regulation of ossification // not recorded /// 0045787 // positive regulation of cell cycle // not recorded /// 0045787 // positive regulation of cell cycle // inferred from sequence or structural similarity /// 0045787 // positive regulation of cell cycle // inferred from electronic annotation /// 0045823 // positive regulation of heart contraction // not recorded /// 0045823 // positive regulation of heart contraction // inferred from sequence or structural similarity /// 0048103 // somatic stem cell division // not recorded /// 0048103 // somatic stem cell division // inferred from sequence or structural similarity /// 0048103 // somatic stem cell division // inferred from electronic annotation /// 0048565 // digestive tract development // inferred from expression pattern /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0048666 // neuron development // not recorded /// 0048666 // neuron development // inferred from sequence or structural similarity /// 0048666 // neuron development // inferred from electronic annotation /// 0048702 // embryonic neurocranium morphogenesis // inferred from direct assay /// 0048839 // inner ear development // inferred from expression pattern /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050714 // positive regulation of protein secretion // not recorded /// 0050777 // negative regulation of immune response // inferred from direct assay /// 0050778 // positive regulation of immune response // inferred from sequence or structural similarity /// 0051280 // negative regulation of release of sequestered calcium ion into cytosol // inferred from direct assay /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0051795 // positive regulation of catagen // not recorded /// 0051795 // positive regulation of catagen // inferred from sequence or structural similarity /// 0051891 // positive regulation of cardioblast differentiation // not recorded /// 0051891 // positive regulation of cardioblast differentiation // inferred from sequence or structural similarity /// 0060038 // cardiac muscle cell proliferation // not recorded /// 0060038 // cardiac muscle cell proliferation // inferred from sequence or structural similarity /// 0060317 // cardiac epithelial to mesenchymal transition // not recorded /// 0060364 // frontal suture morphogenesis // inferred from expression pattern /// 0060389 // pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0060389 // pathway-restricted SMAD protein phosphorylation // not recorded 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region // inferred from electronic annotation /// 0005604 // basement membrane // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from sequence or structural similarity /// 0030424 // axon // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded /// 0031093 // platelet alpha granule lumen // not recorded /// 0043025 // neuronal cell body // not recorded /// 0043025 // neuronal cell body // inferred from sequence or structural similarity /// 0043025 // neuronal cell body // inferred from electronic annotation 0001540 // beta-amyloid binding // not recorded /// 0001540 // beta-amyloid binding // inferred from sequence or structural similarity /// 0004702 // receptor signaling protein serine/threonine kinase activity // not recorded /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from sequence or structural similarity /// 0005114 // type II transforming growth factor beta receptor binding // not recorded /// 0005160 // transforming growth factor beta receptor binding // not recorded /// 0005160 // transforming growth factor beta receptor binding // inferred from sequence or structural similarity /// 0005160 // transforming growth factor beta receptor binding // traceable author statement /// 0005160 // transforming growth factor beta receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from mutant phenotype 1378964_at AI709953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709953 /DB_XREF=gi:4999729 /DB_XREF=UI-R-AD1-zr-g-07-0-UI.s1 /CLONE=UI-R-AD1-zr-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.16230.1 /TIER=ConsEnd /STK=3 /UG=Rn.16230 /UG_TITLE=ESTs AI709953 1378965_at AA818967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818967 /DB_XREF=gi:4227634 /DB_XREF=UI-R-A0-as-g-01-0-UI.s1 /CLONE=UI-R-A0-as-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.33908.1 /TIER=ConsEnd /STK=3 /UG=Rn.33908 /UG_TITLE=ESTs AA818967 1378966_at AI406473 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406473 /DB_XREF=gi:4249977 /DB_XREF=EST234759 /CLONE=RBRDN28 /FEA=EST /CNT=3 /TID=Rn.44007.1 /TIER=ConsEnd /STK=3 /UG=Rn.44007 /UG_TITLE=ESTs AI406473 1378967_at BF420350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420350 /DB_XREF=gi:11408339 /DB_XREF=UI-R-BJ2-bpl-h-05-0-UI.s1 /CLONE=UI-R-BJ2-bpl-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.61548.1 /TIER=ConsEnd /STK=3 /UG=Rn.61548 /UG_TITLE=ESTs BF420350 1378968_at BI289975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289975 /DB_XREF=gi:14948094 /DB_XREF=UI-R-DK0-cfq-d-01-0-UI.s1 /CLONE=UI-R-DK0-cfq-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.61763.1 /TIER=ConsEnd /STK=3 /UG=Rn.61763 /UG_TITLE=ESTs BI289975 Bcl2-like 14 (apoptosis facilitator) Bcl2l14 500348 NM_001024338 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0043229 // intracellular organelle // inferred from electronic annotation /// 0043229 // intracellular organelle // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378969_at AI235763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235763 /DB_XREF=gi:3829269 /DB_XREF=EST232325 /CLONE=ROVCW74 /FEA=EST /CNT=3 /TID=Rn.64336.1 /TIER=ConsEnd /STK=3 /UG=Rn.64336 /UG_TITLE=ESTs AI235763 Microtubule associated serine/threonine kinase family member 4 Mast4 310040 XM_001063274 /// XM_226732 0006468 // protein phosphorylation // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1378970_at AW252385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252385 /DB_XREF=gi:6595976 /DB_XREF=UI-R-BJ0-aeh-g-08-0-UI.s1 /CLONE=UI-R-BJ0-aeh-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.44707.1 /TIER=ConsEnd /STK=3 /UG=Rn.44707 /UG_TITLE=ESTs, Weakly similar to MYPH RAT MYOSIN-BINDING PROTEIN H (R.norvegicus) AW252385 Myosin binding protein H-like Mybphl 310782 NM_001014042 1378971_at AW435316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435316 /DB_XREF=gi:6966623 /DB_XREF=UI-R-BJ0p-afc-b-03-0-UI.s1 /CLONE=UI-R-BJ0p-afc-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.49440.1 /TIER=ConsEnd /STK=3 /UG=Rn.49440 /UG_TITLE=ESTs, Weakly similar to AF10_MOUSE AF-10 PROTEIN (M.musculus) AW435316 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 Mllt6 303504 XM_001081378 /// XM_239329 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1378972_at AI071547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071547 /DB_XREF=gi:3397762 /DB_XREF=UI-R-C1-ky-c-12-0-UI.s2 /CLONE=UI-R-C1-ky-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.19390.1 /TIER=ConsEnd /STK=3 /UG=Rn.19390 /UG_TITLE=ESTs AI071547 WW and C2 domain containing 1 Wwc1 303039 XM_001066364 /// XM_002724669 /// XM_002724670 /// XM_002724671 /// XM_002727761 /// XM_002727762 /// XM_002727763 /// XM_220308 0016477 // cell migration // not recorded /// 0035330 // regulation of hippo signaling cascade // not recorded /// 0043410 // positive regulation of MAPKKK cascade // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0032587 // ruffle membrane // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0003713 // transcription coactivator activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378973_at BF396260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396260 /DB_XREF=gi:11381232 /DB_XREF=UI-R-BS2-bdw-b-04-0-UI.s1 /CLONE=UI-R-BS2-bdw-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.33015.1 /TIER=ConsEnd /STK=3 /UG=Rn.33015 /UG_TITLE=ESTs BF396260 OTU domain containing 7B Otud7b 310677 NM_001107697 0016579 // protein deubiquitination // not recorded /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1378974_at AI709944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709944 /DB_XREF=gi:4999720 /DB_XREF=UI-R-AD1-zr-f-10-0-UI.s1 /CLONE=UI-R-AD1-zr-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.40955.1 /TIER=ConsEnd /STK=3 /UG=Rn.40955 /UG_TITLE=ESTs AI709944 1378975_at AW252882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252882 /DB_XREF=gi:6596473 /DB_XREF=UI-R-BJ0-ael-g-12-0-UI.s1 /CLONE=UI-R-BJ0-ael-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.64794.1 /TIER=ConsEnd /STK=3 /UG=Rn.64794 /UG_TITLE=ESTs AW252882 zinc finger protein 428 Zfp428 361519 NM_001108476 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1378976_x_at AI070952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070952 /DB_XREF=gi:3397203 /DB_XREF=UI-R-C2-na-c-02-0-UI.s1 /CLONE=UI-R-C2-na-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.19894.1 /TIER=ConsEnd /STK=3 /UG=Rn.19894 /UG_TITLE=ESTs AI070952 1378977_at AI178197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178197 /DB_XREF=gi:3728835 /DB_XREF=EST221862 /CLONE=RPLCN41 /FEA=EST /CNT=3 /TID=Rn.40209.1 /TIER=ConsEnd /STK=3 /UG=Rn.40209 /UG_TITLE=ESTs AI178197 1378978_a_at AW520354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520354 /DB_XREF=gi:7162732 /DB_XREF=UI-R-BJ0p-aex-f-02-0-UI.s1 /CLONE=UI-R-BJ0p-aex-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.22234.1 /TIER=ConsEnd /STK=3 /UG=Rn.22234 /UG_TITLE=ESTs AW520354 Proline rich 12 Prr12 361569 XM_001080668 /// XM_341852 0003677 // DNA binding // inferred from electronic annotation 1378979_x_at AW520354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520354 /DB_XREF=gi:7162732 /DB_XREF=UI-R-BJ0p-aex-f-02-0-UI.s1 /CLONE=UI-R-BJ0p-aex-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.22234.1 /TIER=ConsEnd /STK=3 /UG=Rn.22234 /UG_TITLE=ESTs AW520354 Proline rich 12 Prr12 361569 XM_001080668 /// XM_341852 0003677 // DNA binding // inferred from electronic annotation 1378980_at AI044779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044779 /DB_XREF=gi:3290842 /DB_XREF=UI-R-C1-jt-b-05-0-UI.s1 /CLONE=UI-R-C1-jt-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.38872.1 /TIER=ConsEnd /STK=3 /UG=Rn.38872 /UG_TITLE=ESTs AI044779 N(alpha)-acetyltransferase 25, NatB auxiliary subunit Naa25 360811 NM_001047900 0005737 // cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378981_at BE108620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108620 /DB_XREF=gi:8500725 /DB_XREF=UI-R-CA0-axg-d-11-0-UI.s1 /CLONE=UI-R-CA0-axg-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.51550.1 /TIER=ConsEnd /STK=3 /UG=Rn.51550 /UG_TITLE=ESTs BE108620 1378982_at AI145793 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145793 /DB_XREF=gi:3667592 /DB_XREF=UI-R-BT0-qi-c-08-0-UI.s1 /CLONE=UI-R-BT0-qi-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.28617.1 /TIER=ConsEnd /STK=3 /UG=Rn.28617 /UG_TITLE=ESTs AI145793 1378983_at AA997020 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997020 /DB_XREF=gi:4280783 /DB_XREF=UI-R-C0-ho-h-09-0-UI.s1 /CLONE=UI-R-C0-ho-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.36317.2 /TIER=ConsEnd /STK=3 /UG=Rn.36317 /UG_TITLE=ESTs AA997020 1378984_at AW254072 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254072 /DB_XREF=gi:6597663 /DB_XREF=UI-R-BJ0-aeo-h-01-0-UI.s1 /CLONE=UI-R-BJ0-aeo-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.40940.1 /TIER=ConsEnd /STK=3 /UG=Rn.40940 /UG_TITLE=ESTs AW254072 1378985_at AW533698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533698 /DB_XREF=gi:7176112 /DB_XREF=UI-R-BU0-anh-a-06-0-UI.s1 /CLONE=UI-R-BU0-anh-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.41731.1 /TIER=ConsEnd /STK=3 /UG=Rn.41731 /UG_TITLE=ESTs AW533698 pseudouridylate synthase-like 1 Pusl1 362681 NM_001108699 0001522 // pseudouridine synthesis // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0009451 // RNA modification // inferred from electronic annotation /// 0031119 // tRNA pseudouridine synthesis // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0009982 // pseudouridine synthase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1378986_at AW525997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525997 /DB_XREF=gi:7168382 /DB_XREF=UI-R-BO1-aiy-b-02-0-UI.s1 /CLONE=UI-R-BO1-aiy-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.46057.1 /TIER=ConsEnd /STK=3 /UG=Rn.46057 /UG_TITLE=ESTs AW525997 1378987_at BE119446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119446 /DB_XREF=gi:8511551 /DB_XREF=UI-R-CA0-bac-g-08-0-UI.s1 /CLONE=UI-R-CA0-bac-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.47663.1 /TIER=ConsEnd /STK=3 /UG=Rn.47663 /UG_TITLE=ESTs BE119446 1378988_at BE117226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117226 /DB_XREF=gi:8509325 /DB_XREF=UI-R-BS1-ayh-c-03-0-UI.s1 /CLONE=UI-R-BS1-ayh-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.9097.1 /TIER=ConsEnd /STK=3 /UG=Rn.9097 /UG_TITLE=ESTs BE117226 mab-21-like 2 (C. elegans) Mab21l2 680102 NM_001109391 0008284 // positive regulation of cell proliferation // not recorded /// 0010172 // embryonic body morphogenesis // not recorded /// 0043010 // camera-type eye development // not recorded 0005634 // nucleus // not recorded 1378989_at BF395809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395809 /DB_XREF=gi:11380780 /DB_XREF=UI-R-BT1-bkc-e-08-0-UI.s1 /CLONE=UI-R-BT1-bkc-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.15093.1 /TIER=ConsEnd /STK=3 /UG=Rn.15093 /UG_TITLE=ESTs BF395809 apoptosis-inducing factor, mitochondrion-associated 2 Aifm2 361843 NM_001139483 0006917 // induction of apoptosis // not recorded /// 0030261 // chromosome condensation // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // not recorded /// 0005829 // cytosol // not recorded 0003677 // DNA binding // not recorded /// 0004174 // electron-transferring-flavoprotein dehydrogenase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // not recorded 1378990_at BI274964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274964 /DB_XREF=gi:14886369 /DB_XREF=UI-R-CX0-bwt-b-03-0-UI.s1 /CLONE=UI-R-CX0-bwt-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.32975.1 /TIER=ConsEnd /STK=3 /UG=Rn.32975 /UG_TITLE=ESTs BI274964 1378991_at AI556795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556795 /DB_XREF=gi:4489158 /DB_XREF=UI-R-C2p-rm-d-09-0-UI.s1 /CLONE=UI-R-C2p-rm-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.39395.1 /TIER=ConsEnd /STK=3 /UG=Rn.39395 /UG_TITLE=ESTs, Highly similar to A56640 CDC4 repeat unit-containing protein - mouse (M.musculus) AI556795 similar to beta-1,3-N-acetylglucosaminyltransferase bGnT-5 RGD1565012 311882 XM_001080213 /// XM_231163 0006486 // protein glycosylation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0008378 // galactosyltransferase activity // inferred from electronic annotation 1378992_at AW520855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520855 /DB_XREF=gi:7163233 /DB_XREF=UI-R-BJ0p-age-c-05-0-UI.s1 /CLONE=UI-R-BJ0p-age-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.45065.1 /TIER=ConsEnd /STK=3 /UG=Rn.45065 /UG_TITLE=ESTs, Weakly similar to T08680 hypothetical protein DKFZp564P0622.1 (H.sapiens) AW520855 F-box and leucine-rich repeat protein 7 Fbxl7 361907 NM_001108545 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1378993_at BF386397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386397 /DB_XREF=gi:11371221 /DB_XREF=UI-R-CA1-bbd-a-08-0-UI.s1 /CLONE=UI-R-CA1-bbd-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.62185.1 /TIER=ConsEnd /STK=3 /UG=Rn.62185 /UG_TITLE=ESTs BF386397 1378994_at AI535127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535127 /DB_XREF=gi:4449262 /DB_XREF=UI-R-C3-sp-c-07-0-UI.s1 /CLONE=UI-R-C3-sp-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.62525.1 /TIER=ConsEnd /STK=3 /UG=Rn.62525 /UG_TITLE=ESTs, Weakly similar to OXYB_HUMAN OXYSTEROL-BINDING PROTEI (H.sapiens) AI535127 1378995_at BF420814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420814 /DB_XREF=gi:11408803 /DB_XREF=UI-R-BJ2-bqa-e-06-0-UI.s1 /CLONE=UI-R-BJ2-bqa-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.63747.1 /TIER=ConsEnd /STK=3 /UG=Rn.63747 /UG_TITLE=ESTs BF420814 Similar to hypothetical protein MGC38960 RGD1310552 300836 NM_001106838 1378996_at BE104522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104522 /DB_XREF=gi:8496622 /DB_XREF=UI-R-BX0-arq-d-04-0-UI.s1 /CLONE=UI-R-BX0-arq-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.64401.1 /TIER=ConsEnd /STK=3 /UG=Rn.64401 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) BE104522 zinc finger protein 282 Znf282 297065 NM_001106592 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1378997_at BM391684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391684 /DB_XREF=gi:18191737 /DB_XREF=UI-R-CN1-cjs-f-12-0-UI.s1 /CLONE=UI-R-CN1-cjs-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.11953.1 /TIER=ConsEnd /STK=3 /UG=Rn.11953 /UG_TITLE=ESTs, Highly similar to EPB6 MOUSE EPHRIN TYPE-B RECEPTOR 6 PRECURSOR (M.musculus) BM391684 Eph receptor B6 Ephb6 312275 NM_001107857 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005003 // ephrin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1378998_at AI071538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071538 /DB_XREF=gi:3397753 /DB_XREF=UI-R-C1-ky-b-12-0-UI.s2 /CLONE=UI-R-C1-ky-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.20558.1 /TIER=ConsEnd /STK=3 /UG=Rn.20558 /UG_TITLE=ESTs AI071538 1378999_a_at AW252553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252553 /DB_XREF=gi:6596144 /DB_XREF=UI-R-BJ0-ada-h-03-0-UI.s1 /CLONE=UI-R-BJ0-ada-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.24985.1 /TIER=ConsEnd /STK=3 /UG=Rn.24985 /UG_TITLE=ESTs AW252553 ubiquitin specific peptidase 49 Usp49 316211 NM_001136470 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379000_at AW252553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252553 /DB_XREF=gi:6596144 /DB_XREF=UI-R-BJ0-ada-h-03-0-UI.s1 /CLONE=UI-R-BJ0-ada-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.24985.1 /TIER=ConsEnd /STK=3 /UG=Rn.24985 /UG_TITLE=ESTs AW252553 ubiquitin specific peptidase 49 Usp49 316211 NM_001136470 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379001_at AA945695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945695 /DB_XREF=gi:4132576 /DB_XREF=EST201194 /CLONE=RLUAS03 /FEA=EST /CNT=3 /TID=Rn.30311.1 /TIER=ConsEnd /STK=3 /UG=Rn.30311 /UG_TITLE=ESTs AA945695 1379002_at AI169333 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169333 /DB_XREF=gi:4134388 /DB_XREF=EST215169 /CLONE=RKIBQ39 /FEA=EST /CNT=3 /TID=Rn.31067.1 /TIER=ConsEnd /STK=3 /UG=Rn.31067 /UG_TITLE=ESTs AI169333 1379003_at BE113169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113169 /DB_XREF=gi:8505274 /DB_XREF=UI-R-BJ1-awc-c-11-0-UI.s1 /CLONE=UI-R-BJ1-awc-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.34580.1 /TIER=ConsEnd /STK=3 /UG=Rn.34580 /UG_TITLE=ESTs, Weakly similar to B48013 proline-rich proteoglycan 2 precursor, parotid - rat (R.norvegicus) BE113169 1379004_at BE113115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113115 /DB_XREF=gi:8505220 /DB_XREF=UI-R-BJ1-awb-g-02-0-UI.s1 /CLONE=UI-R-BJ1-awb-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.38107.1 /TIER=ConsEnd /STK=3 /UG=Rn.38107 /UG_TITLE=ESTs BE113115 metadherin Mtdh 170910 NM_133398 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0070830 // tight junction assembly // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from direct assay /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded /// 0046581 // intercellular canaliculus // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051059 // NF-kappaB binding // not recorded /// 0051059 // NF-kappaB binding // inferred from sequence or structural similarity /// 0051059 // NF-kappaB binding // inferred from electronic annotation 1379005_at AI555974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555974 /DB_XREF=gi:4488337 /DB_XREF=UI-R-C2p-rc-f-09-0-UI.s1 /CLONE=UI-R-C2p-rc-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.39047.1 /TIER=ConsEnd /STK=3 /UG=Rn.39047 /UG_TITLE=ESTs AI555974 ADP-ribosylation-like factor 6 interacting protein 6 Arl6ip6 499798 NM_001024310 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379006_at AI711098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711098 /DB_XREF=gi:5000874 /DB_XREF=UI-R-AD1-zo-b-04-0-UI.s1 /CLONE=UI-R-AD1-zo-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.44703.1 /TIER=ConsEnd /STK=3 /UG=Rn.44703 /UG_TITLE=ESTs, Weakly similar to RENAL TRANSCRIPTION FACTOR KID-1 (R.norvegicus) AI711098 Similar to Zinc finger protein 551 (Zinc finger protein KOX23) LOC691396 691396 XM_001078065 1379007_at AI712659 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712659 /DB_XREF=gi:5016459 /DB_XREF=UI-R-AF1-aau-a-08-0-UI.s1 /CLONE=UI-R-AF1-aau-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.44733.1 /TIER=ConsEnd /STK=3 /UG=Rn.44733 /UG_TITLE=ESTs AI712659 1379008_at BE104149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104149 /DB_XREF=gi:8496249 /DB_XREF=UI-R-BX0-arl-d-01-0-UI.s1 /CLONE=UI-R-BX0-arl-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.44847.1 /TIER=ConsEnd /STK=3 /UG=Rn.44847 /UG_TITLE=ESTs, Moderately similar to TESTIN 2 (M.musculus) BE104149 1379009_at AI548331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548331 /DB_XREF=gi:4465819 /DB_XREF=UI-R-C3-tg-h-07-0-UI.s1 /CLONE=UI-R-C3-tg-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.49033.1 /TIER=ConsEnd /STK=3 /UG=Rn.49033 /UG_TITLE=ESTs AI548331 1379010_at AA956727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956727 /DB_XREF=gi:4239201 /DB_XREF=UI-R-E1-fo-c-09-0-UI.s1 /CLONE=UI-R-E1-fo-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.9002.1 /TIER=ConsEnd /STK=3 /UG=Rn.9002 /UG_TITLE=ESTs AA956727 Splicing factor, arginine/serine-rich 3 Sfrs3 361814 NM_001047907 0008380 // RNA splicing // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379011_at BE118279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118279 /DB_XREF=gi:8510384 /DB_XREF=UI-R-BJ1-azo-g-08-0-UI.s1 /CLONE=UI-R-BJ1-azo-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.52979.1 /TIER=ConsEnd /STK=3 /UG=Rn.52979 /UG_TITLE=ESTs BE118279 1379012_at BF387281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387281 /DB_XREF=gi:11372105 /DB_XREF=UI-R-CA1-bbl-f-06-0-UI.s1 /CLONE=UI-R-CA1-bbl-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.58118.1 /TIER=ConsEnd /STK=3 /UG=Rn.58118 /UG_TITLE=ESTs BF387281 1379013_at BE104120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104120 /DB_XREF=gi:8496220 /DB_XREF=UI-R-BX0-arl-a-03-0-UI.s1 /CLONE=UI-R-BX0-arl-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.40727.1 /TIER=ConsEnd /STK=3 /UG=Rn.40727 /UG_TITLE=ESTs BE104120 similar to mKIAA1402 protein RGD1306404 296733 NM_001106574 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1379014_at BF412835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412835 /DB_XREF=gi:11400824 /DB_XREF=UI-R-BT1-bnu-a-10-0-UI.s1 /CLONE=UI-R-BT1-bnu-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.62175.1 /TIER=ConsEnd /STK=3 /UG=Rn.62175 /UG_TITLE=ESTs BF412835 ADP-ribosylation factor 2 Arf2 79119 NM_024150 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1379015_at BF419783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419783 /DB_XREF=gi:11407772 /DB_XREF=UI-R-CA0-bpg-b-10-0-UI.s1 /CLONE=UI-R-CA0-bpg-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.63642.1 /TIER=ConsEnd /STK=3 /UG=Rn.63642 /UG_TITLE=ESTs, Moderately similar to T47161 hypothetical protein DKFZp762A1712.1 (H.sapiens) BF419783 forkhead box J2 Foxj2 502886 NM_001109352 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1379016_at BF412694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412694 /DB_XREF=gi:11400683 /DB_XREF=UI-R-BT1-bnt-a-06-0-UI.s1 /CLONE=UI-R-BT1-bnt-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.64281.1 /TIER=ConsEnd /STK=3 /UG=Rn.64281 /UG_TITLE=ESTs BF412694 1379017_at AI111697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111697 /DB_XREF=gi:3511646 /DB_XREF=UI-R-Y0-mf-d-01-0-UI.s1 /CLONE=UI-R-Y0-mf-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.26612.1 /TIER=ConsEnd /STK=3 /UG=Rn.26612 /UG_TITLE=ESTs AI111697 1379018_at BG375236 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375236 /DB_XREF=gi:13299708 /DB_XREF=UI-R-CV1-bsy-a-04-0-UI.s1 /CLONE=UI-R-CV1-bsy-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.45033.1 /TIER=ConsEnd /STK=3 /UG=Rn.45033 /UG_TITLE=ESTs BG375236 1379019_at AI639534 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639534 /DB_XREF=gi:4700568 /DB_XREF=rx02081s /CLONE=rx02081 /FEA=EST /CNT=3 /TID=Rn.18940.1 /TIER=ConsEnd /STK=3 /UG=Rn.18940 /UG_TITLE=ESTs, Weakly similar to ATS4_RAT ADAMTS-4 precursor (A disintegrin and metalloproteinase with thrombospondin motifs 4) (ADAM-TS 4) (ADAM-TS4) (Aggrecanase 1) (Fragment) (R.norvegicus) AI639534 complement factor properdin Cfp 299314 NM_001106757 0006957 // complement activation, alternative pathway // not recorded 0005576 // extracellular region // not recorded /// 0031012 // extracellular matrix // not recorded 1379020_at AI454024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454024 /DB_XREF=gi:4290830 /DB_XREF=UI-R-BT0-qa-c-05-0-UI.s1 /CLONE=UI-R-BT0-qa-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.7986.1 /TIER=ConsEnd /STK=3 /UG=Rn.7986 /UG_TITLE=ESTs AI454024 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1379021_a_at AI170497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170497 /DB_XREF=gi:3710537 /DB_XREF=EST216425 /CLONE=RLUCO46 /FEA=EST /CNT=1 /TID=Rn.23517.2 /TIER=ConsEnd /STK=1 /UG=Rn.23517 /UG_TITLE=ESTs AI170497 1379022_at AI577318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577318 /DB_XREF=gi:4561694 /DB_XREF=UI-R-AD0-wg-g-11-0-UI.s1 /CLONE=UI-R-AD0-wg-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.38277.1 /TIER=ConsEnd /STK=3 /UG=Rn.38277 /UG_TITLE=ESTs AI577318 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation 1379023_at BF406975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406975 /DB_XREF=gi:11394915 /DB_XREF=UI-R-BJ2-bps-g-11-0-UI.s1 /CLONE=UI-R-BJ2-bps-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.23266.1 /TIER=ConsEnd /STK=3 /UG=Rn.23266 /UG_TITLE=ESTs BF406975 1379024_at BF392308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392308 /DB_XREF=gi:11377165 /DB_XREF=UI-R-CA0-bfn-e-09-0-UI.s1 /CLONE=UI-R-CA0-bfn-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.46255.1 /TIER=ConsEnd /STK=3 /UG=Rn.46255 /UG_TITLE=ESTs BF392308 1379025_at BF392966 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392966 /DB_XREF=gi:11377826 /DB_XREF=UI-R-CA0-bfr-c-10-0-UI.s1 /CLONE=UI-R-CA0-bfr-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.58006.1 /TIER=ConsEnd /STK=3 /UG=Rn.58006 /UG_TITLE=ESTs, Highly similar to T00076 hypothetical protein KIAA0462 (H.sapiens) BF392966 ubiquitin protein ligase E3 component n-recognin 4 Ubr4 313658 NM_001039026 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379026_at AI072008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072008 /DB_XREF=gi:3398202 /DB_XREF=UI-R-C2-nd-c-10-0-UI.s1 /CLONE=UI-R-C2-nd-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.20693.1 /TIER=ConsEnd /STK=3 /UG=Rn.20693 /UG_TITLE=ESTs AI072008 rhomboid, veinlet-like 3 (Drosophila) Rhbdl3 287556 NM_001105819 0007165 // signal transduction // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1379027_at BM390702 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390702 /DB_XREF=gi:18190755 /DB_XREF=UI-R-CN1-cjr-b-09-0-UI.s1 /CLONE=UI-R-CN1-cjr-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.19390.2 /TIER=ConsEnd /STK=3 /UG=Rn.19390 /UG_TITLE=ESTs BM390702 WW and C2 domain containing 1 Wwc1 303039 XM_001066364 /// XM_002724669 /// XM_002724670 /// XM_002724671 /// XM_002727761 /// XM_002727762 /// XM_002727763 /// XM_220308 0016477 // cell migration // not recorded /// 0035330 // regulation of hippo signaling cascade // not recorded /// 0043410 // positive regulation of MAPKKK cascade // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0032587 // ruffle membrane // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0003713 // transcription coactivator activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379028_at BE118950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118950 /DB_XREF=gi:8511055 /DB_XREF=UI-R-BS1-azw-f-08-0-UI.s1 /CLONE=UI-R-BS1-azw-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.40925.1 /TIER=ConsEnd /STK=3 /UG=Rn.40925 /UG_TITLE=ESTs BE118950 sperm associated antigen 7 Spag7 303260 NM_001107016 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379029_at BI284478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284478 /DB_XREF=gi:14937196 /DB_XREF=UI-R-CX0s-ccr-e-08-0-UI.s1 /CLONE=UI-R-CX0s-ccr-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.61329.1 /TIER=ConsEnd /STK=3 /UG=Rn.61329 /UG_TITLE=ESTs BI284478 1379030_at AI549346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549346 /DB_XREF=gi:4466834 /DB_XREF=UI-R-C3-ty-f-05-0-UI.s1 /CLONE=UI-R-C3-ty-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.60236.1 /TIER=ConsEnd /STK=3 /UG=Rn.60236 /UG_TITLE=ESTs AI549346 1379031_at BM390697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390697 /DB_XREF=gi:18190750 /DB_XREF=UI-R-CN1-cjr-o-22-0-UI.s1 /CLONE=UI-R-CN1-cjr-o-22-0-UI /FEA=EST /CNT=3 /TID=Rn.21437.2 /TIER=ConsEnd /STK=3 /UG=Rn.21437 /UG_TITLE=ESTs BM390697 grancalcin Gca 295647 NM_001106483 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1379032_at BG372658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372658 /DB_XREF=gi:13269195 /DB_XREF=UI-R-CV1-brs-h-04-0-UI.s1 /CLONE=UI-R-CV1-brs-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.22601.1 /TIER=ConsEnd /STK=3 /UG=Rn.22601 /UG_TITLE=ESTs BG372658 1379033_at AI501145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501145 /DB_XREF=gi:4398996 /DB_XREF=UI-R-C2p-rs-f-07-0-UI.s1 /CLONE=UI-R-C2p-rs-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.37030.1 /TIER=ConsEnd /STK=3 /UG=Rn.37030 /UG_TITLE=ESTs AI501145 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like Ctdspl 301056 NM_001106865 0016791 // phosphatase activity // inferred from electronic annotation 1379034_at AI029552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029552 /DB_XREF=gi:4299347 /DB_XREF=UI-R-C0-ix-a-09-0-UI.s1 /CLONE=UI-R-C0-ix-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.45299.1 /TIER=ConsEnd /STK=3 /UG=Rn.45299 /UG_TITLE=ESTs AI029552 1379035_at BF413511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413511 /DB_XREF=gi:11401500 /DB_XREF=UI-R-CA0-bof-b-02-0-UI.s1 /CLONE=UI-R-CA0-bof-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.64396.1 /TIER=ConsEnd /STK=3 /UG=Rn.64396 /UG_TITLE=ESTs BF413511 1379036_at AI170819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170819 /DB_XREF=gi:3710859 /DB_XREF=EST216758 /CLONE=RMUBB86 /FEA=EST /CNT=3 /TID=Rn.115.1 /TIER=ConsEnd /STK=3 /UG=Rn.115 /UG_TITLE=ESTs, Moderately similar to A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna Methyltransferase Homologue (H.sapiens) AI170819 tRNA aspartic acid methyltransferase 1 Trdmt1 291324 NM_001031643 0001975 // response to amphetamine // inferred from expression pattern /// 0006306 // DNA methylation // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016428 // tRNA (cytosine-5-)-methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1379037_at AW533389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533389 /DB_XREF=gi:7175803 /DB_XREF=UI-R-BU0-anb-d-01-0-UI.s1 /CLONE=UI-R-BU0-anb-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.34655.1 /TIER=ConsEnd /STK=3 /UG=Rn.34655 /UG_TITLE=ESTs AW533389 1379038_at AW525506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525506 /DB_XREF=gi:7167891 /DB_XREF=UI-R-BJ0p-ail-d-08-0-UI.s1 /CLONE=UI-R-BJ0p-ail-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.41452.1 /TIER=ConsEnd /STK=3 /UG=Rn.41452 /UG_TITLE=ESTs AW525506 1379039_at BI278589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278589 /DB_XREF=gi:14925585 /DB_XREF=UI-R-CW0-bxn-e-05-0-UI.s1 /CLONE=UI-R-CW0-bxn-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.76446.1 /TIER=ConsEnd /STK=3 /UG=Rn.76446 /UG_TITLE=ESTs BI278589 chemokine-like receptor 1 Cmklr1 60669 NM_022218 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001637 // G-protein chemoattractant receptor activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1379040_at AI136672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136672 /DB_XREF=gi:3637449 /DB_XREF=UI-R-C2p-nq-b-11-0-UI.s1 /CLONE=UI-R-C2p-nq-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.19841.1 /TIER=ConsEnd /STK=3 /UG=Rn.19841 /UG_TITLE=ESTs AI136672 1379041_at BG381034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381034 /DB_XREF=gi:13305506 /DB_XREF=UI-R-CT0-bug-e-01-0-UI.s1 /CLONE=UI-R-CT0-bug-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.34125.1 /TIER=ConsEnd /STK=3 /UG=Rn.34125 /UG_TITLE=ESTs BG381034 phosphoinositide-3-kinase, catalytic, alpha polypeptide Pik3ca 170911 NM_133399 /// XM_001059350 /// XM_001063573 0006006 // glucose metabolic process // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0040014 // regulation of multicellular organism growth // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043491 // protein kinase B signaling cascade // not recorded /// 0046854 // phosphoinositide phosphorylation // inferred from direct assay /// 0046854 // phosphoinositide phosphorylation // not recorded /// 0046854 // phosphoinositide phosphorylation // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation 0005829 // cytosol // not recorded /// 0005942 // phosphoinositide 3-kinase complex // inferred from direct assay /// 0005942 // phosphoinositide 3-kinase complex // not recorded /// 0030027 // lamellipodium // not recorded 0004428 // inositol or phosphatidylinositol kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from direct assay /// 0016303 // 1-phosphatidylinositol-3-kinase activity // not recorded /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0043560 // insulin receptor substrate binding // not recorded /// 0046934 // phosphatidylinositol-4,5-bisphosphate 3-kinase activity // not recorded 1379042_at BF419814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419814 /DB_XREF=gi:11407803 /DB_XREF=UI-R-CA0-bpg-e-08-0-UI.s1 /CLONE=UI-R-CA0-bpg-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.62663.1 /TIER=ConsEnd /STK=3 /UG=Rn.62663 /UG_TITLE=ESTs BF419814 1379043_at BI284837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284837 /DB_XREF=gi:14937877 /DB_XREF=UI-R-CX0s-ccs-g-12-0-UI.s1 /CLONE=UI-R-CX0s-ccs-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.41859.1 /TIER=ConsEnd /STK=3 /UG=Rn.41859 /UG_TITLE=ESTs BI284837 1379044_at AW534064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534064 /DB_XREF=gi:7176478 /DB_XREF=UI-R-C4-alm-g-02-0-UI.s1 /CLONE=UI-R-C4-alm-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.41894.1 /TIER=ConsEnd /STK=3 /UG=Rn.41894 /UG_TITLE=ESTs AW534064 La ribonucleoprotein domain family, member 1B Larp1b 310348 NM_001014036 1379045_at AI639215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639215 /DB_XREF=gi:4700249 /DB_XREF=rx01040s /CLONE=rx01040 /FEA=EST /CNT=3 /TID=Rn.49043.1 /TIER=ConsEnd /STK=3 /UG=Rn.49043 /UG_TITLE=ESTs AI639215 1379046_at BI290140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290140 /DB_XREF=gi:14948432 /DB_XREF=UI-R-DK0-cfs-e-07-0-UI.s1 /CLONE=UI-R-DK0-cfs-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.69212.1 /TIER=ConsEnd /STK=3 /UG=Rn.69212 /UG_TITLE=ESTs, Moderately similar to Y152_HUMAN HYPOTHETICAL PROTEIN KIAA0152 (H.sapiens) BI290140 malectin Mlec 304543 NM_001013983 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0030246 // carbohydrate binding // inferred from sequence or structural similarity 1379047_at AW251632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251632 /DB_XREF=gi:6595223 /DB_XREF=UI-R-BJ0-adp-a-10-0-UI.s1 /CLONE=UI-R-BJ0-adp-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.40984.1 /TIER=ConsEnd /STK=3 /UG=Rn.40984 /UG_TITLE=ESTs AW251632 1379048_at BI296505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296505 /DB_XREF=gi:14960994 /DB_XREF=UI-R-CV2-cgs-a-08-0-UI.s1 /CLONE=UI-R-CV2-cgs-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.66276.1 /TIER=ConsEnd /STK=3 /UG=Rn.66276 /UG_TITLE=ESTs BI296505 1379049_a_at AW532022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532022 /DB_XREF=gi:7174436 /DB_XREF=UI-R-BS0-amn-b-10-0-UI.s1 /CLONE=UI-R-BS0-amn-b-10-0-UI /FEA=EST /CNT=8 /TID=Rn.25534.2 /TIER=ConsEnd /STK=1 /UG=Rn.25534 /UG_TITLE=ESTs AW532022 1379050_at AW532022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532022 /DB_XREF=gi:7174436 /DB_XREF=UI-R-BS0-amn-b-10-0-UI.s1 /CLONE=UI-R-BS0-amn-b-10-0-UI /FEA=EST /CNT=8 /TID=Rn.25534.2 /TIER=ConsEnd /STK=1 /UG=Rn.25534 /UG_TITLE=ESTs AW532022 1379051_at AW528292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528292 /DB_XREF=gi:7170706 /DB_XREF=UI-R-BT1-ajw-g-12-0-UI.s1 /CLONE=UI-R-BT1-ajw-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.26782.1 /TIER=ConsEnd /STK=3 /UG=Rn.26782 /UG_TITLE=ESTs AW528292 1379052_at AW528643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528643 /DB_XREF=gi:7171057 /DB_XREF=UI-R-BO1-ajr-g-02-0-UI.s1 /CLONE=UI-R-BO1-ajr-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.28042.1 /TIER=ConsEnd /STK=3 /UG=Rn.28042 /UG_TITLE=ESTs AW528643 1379053_at BF404363 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404363 /DB_XREF=gi:11392338 /DB_XREF=UI-R-CA1-bie-c-04-0-UI.s1 /CLONE=UI-R-CA1-bie-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.60480.1 /TIER=ConsEnd /STK=3 /UG=Rn.60480 /UG_TITLE=ESTs, Weakly similar to adenosine kinase (Caenorhabditis elegans) (C.elegans) BF404363 1379054_at BF391881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391881 /DB_XREF=gi:11376736 /DB_XREF=UI-R-CA1-bcy-f-09-0-UI.s1 /CLONE=UI-R-CA1-bcy-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.61655.1 /TIER=ConsEnd /STK=3 /UG=Rn.61655 /UG_TITLE=ESTs BF391881 1379055_x_at BF410240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410240 /DB_XREF=gi:11398215 /DB_XREF=UI-R-CA1-bjv-b-07-0-UI.s1 /CLONE=UI-R-CA1-bjv-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.64400.1 /TIER=ConsEnd /STK=3 /UG=Rn.64400 /UG_TITLE=ESTs BF410240 hypothetical protein LOC100360398 LOC100360398 100360398 XM_002728985 1379056_at BG380506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380506 /DB_XREF=gi:13304984 /DB_XREF=UI-R-CT0-bty-b-09-0-UI.s1 /CLONE=UI-R-CT0-bty-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.23763.1 /TIER=ConsEnd /STK=3 /UG=Rn.23763 /UG_TITLE=ESTs BG380506 dysbindin (dystrobrevin binding protein 1) domain containing 1 Dbndd1 361437 NM_001014156 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1379057_at BG371442 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371442 /DB_XREF=gi:13267979 /DB_XREF=UI-R-CW0-bvv-b-06-0-UI.s1 /CLONE=UI-R-CW0-bvv-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.45027.1 /TIER=ConsEnd /STK=3 /UG=Rn.45027 /UG_TITLE=ESTs BG371442 hypothetical protein LOC683460 LOC683460 683460 XM_001065403 1379058_at AA900904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900904 /DB_XREF=gi:4233400 /DB_XREF=UI-R-E0-dc-b-09-0-UI.s1 /CLONE=UI-R-E0-dc-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.5854.1 /TIER=ConsEnd /STK=3 /UG=Rn.5854 /UG_TITLE=ESTs AA900904 1379059_at BG373522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373522 /DB_XREF=gi:13270059 /DB_XREF=UI-R-CS0-bsd-g-07-0-UI.s1 /CLONE=UI-R-CS0-bsd-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.62498.1 /TIER=ConsEnd /STK=3 /UG=Rn.62498 /UG_TITLE=ESTs BG373522 MICAL-like 2 Micall2 288515 XM_002724783 /// XM_221956 0006897 // endocytosis // not recorded 0005923 // tight junction // not recorded /// 0032432 // actin filament bundle // not recorded 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379060_at BG378788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378788 /DB_XREF=gi:13303260 /DB_XREF=UI-R-CV1-bvs-h-02-0-UI.s1 /CLONE=UI-R-CV1-bvs-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.66605.1 /TIER=ConsEnd /STK=3 /UG=Rn.66605 /UG_TITLE=ESTs BG378788 1379061_at BI290700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290700 /DB_XREF=gi:14949516 /DB_XREF=UI-R-DK0-cfy-d-05-0-UI.s1 /CLONE=UI-R-DK0-cfy-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.69316.1 /TIER=ConsEnd /STK=3 /UG=Rn.69316 /UG_TITLE=ESTs BI290700 KH and NYN domain containing Khnyn 498517 XR_085623 /// XR_086021 1379062_at BI291230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291230 /DB_XREF=gi:14950576 /DB_XREF=UI-R-CV2-cgm-g-09-0-UI.s1 /CLONE=UI-R-CV2-cgm-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.72241.1 /TIER=ConsEnd /STK=3 /UG=Rn.72241 /UG_TITLE=ESTs BI291230 hypothetical LOC100151767 LOC100151767 100151767 NM_001127503 1379063_at BG375107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375107 /DB_XREF=gi:13299579 /DB_XREF=UI-R-CV1-bsx-b-11-0-UI.s1 /CLONE=UI-R-CV1-bsx-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.76406.1 /TIER=ConsEnd /STK=3 /UG=Rn.76406 /UG_TITLE=ESTs BG375107 1379064_at BI296614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296614 /DB_XREF=gi:14961214 /DB_XREF=UI-R-CV2-cgt-c-07-0-UI.s1 /CLONE=UI-R-CV2-cgt-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.76441.1 /TIER=ConsEnd /STK=3 /UG=Rn.76441 /UG_TITLE=ESTs BI296614 1379065_at BI295014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295014 /DB_XREF=gi:14958034 /DB_XREF=UI-R-DK0-cee-g-06-0-UI.s1 /CLONE=UI-R-DK0-cee-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.79035.1 /TIER=ConsEnd /STK=3 /UG=Rn.79035 /UG_TITLE=ESTs, Weakly similar to A1AT RAT ALPHA-1-ANTIPROTEINASE PRECURSOR (R.norvegicus) BI295014 serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12 Serpina12 191570 NM_138825 0006006 // glucose metabolic process // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1379066_at BI291239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291239 /DB_XREF=gi:14950593 /DB_XREF=UI-R-CV2-cgn-b-08-0-UI.s1 /CLONE=UI-R-CV2-cgn-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.79242.1 /TIER=ConsEnd /STK=3 /UG=Rn.79242 /UG_TITLE=ESTs, Weakly similar to low affinity Na-dependent glucose transporter (SGLT2) (Rattus norvegicus) (R.norvegicus) BI291239 Solute carrier family 5 (inositol transporters), member 3 Slc5a3 114507 NM_053715 0006020 // inositol metabolic process // not recorded /// 0006020 // inositol metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0007422 // peripheral nervous system development // not recorded /// 0007422 // peripheral nervous system development // inferred from electronic annotation /// 0015798 // myo-inositol transport // not recorded /// 0015798 // myo-inositol transport // inferred from electronic annotation /// 0043576 // regulation of respiratory gaseous exchange // not recorded /// 0043576 // regulation of respiratory gaseous exchange // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005367 // myo-inositol:sodium symporter activity // not recorded 1379067_at AA956006 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956006 /DB_XREF=gi:4238401 /DB_XREF=UI-R-E1-fb-h-05-0-UI.s1 /CLONE=UI-R-E1-fb-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.9528.1 /TIER=ConsEnd /STK=3 /UG=Rn.9528 /UG_TITLE=ESTs, Weakly similar to ADG MOUSE GAMMA-ADAPTIN (M.musculus) AA956006 golgi associated, gamma adaptin ear containing, ARF binding protein 3 Gga3 360658 NM_001108304 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0030117 // membrane coat // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0044431 // Golgi apparatus part // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030306 // ADP-ribosylation factor binding // not recorded 1379068_at BI294828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294828 /DB_XREF=gi:14957662 /DB_XREF=UI-R-DK0-cec-f-05-0-UI.s1 /CLONE=UI-R-DK0-cec-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.27285.1 /TIER=ConsEnd /STK=3 /UG=Rn.27285 /UG_TITLE=ESTs BI294828 armadillo repeat containing 9 Armc9 301579 NM_001109663 0005488 // binding // inferred from electronic annotation 1379069_at AI145821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145821 /DB_XREF=gi:3667620 /DB_XREF=UI-R-BT0-qi-h-07-0-UI.s1 /CLONE=UI-R-BT0-qi-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.38519.1 /TIER=ConsEnd /STK=3 /UG=Rn.38519 /UG_TITLE=ESTs AI145821 Hypothetical protein LOC100192314 LOC100192314 100192314 NM_001136272 1379070_at BI297797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297797 /DB_XREF=gi:14974077 /DB_XREF=UI-R-CV2-cha-g-09-0-UI.s1 /CLONE=UI-R-CV2-cha-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.66174.1 /TIER=ConsEnd /STK=3 /UG=Rn.66174 /UG_TITLE=ESTs BI297797 1379071_at BF389558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389558 /DB_XREF=gi:11374393 /DB_XREF=UI-R-CJ0-bfd-b-06-0-UI.s1 /CLONE=UI-R-CJ0-bfd-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.9045.2 /TIER=ConsEnd /STK=3 /UG=Rn.9045 /UG_TITLE=ESTs, Weakly similar to glycoprotein galactosyltransferase beta 1, 4; beta-1,4-GalT; galactosyltransferase 2 beta 1, 4; B-1,4-GalT1; beta-1,4-GalT1 (Mus musculus) (M.musculus) BF389558 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 B4galt2 313536 NM_001107965 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1379072_at AA997659 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997659 /DB_XREF=gi:4280941 /DB_XREF=UI-R-C0-hm-b-12-0-UI.s1 /CLONE=UI-R-C0-hm-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.33633.1 /TIER=ConsEnd /STK=3 /UG=Rn.33633 /UG_TITLE=ESTs AA997659 phosphorylase kinase, alpha 2 Phka2 678739 NM_001190994 /// XM_001053483 /// XM_001053550 /// XM_002727556 /// XM_002727557 0005976 // polysaccharide metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation 0005964 // phosphorylase kinase complex // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004339 // glucan 1,4-alpha-glucosidase activity // inferred from electronic annotation /// 0004689 // phosphorylase kinase activity // inferred from direct assay /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1379073_at AA859663 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859663 /DB_XREF=gi:4230208 /DB_XREF=UI-R-E0-bs-c-07-0-UI.s1 /CLONE=UI-R-E0-bs-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.41.1 /TIER=ConsEnd /STK=3 /UG=Rn.41 /UG_TITLE=ESTs AA859663 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 Slc25a23 301113 NM_001106873 0007165 // signal transduction // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1379074_at BE329032 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329032 /DB_XREF=gi:9202808 /DB_XREF=hq32h06.x1 /CLONE=IMAGE:3121115 /FEA=EST /CNT=3 /TID=Rn.15258.1 /TIER=ConsEnd /STK=3 /UG=Rn.15258 /UG_TITLE=ESTs BE329032 oral cancer overexpressed 1 Oraov1 309136 NM_001107565 1379075_at AI501287 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501287 /DB_XREF=gi:4399138 /DB_XREF=UI-R-C2p-ru-b-02-0-UI.s1 /CLONE=UI-R-C2p-ru-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.35322.1 /TIER=ConsEnd /STK=3 /UG=Rn.35322 /UG_TITLE=ESTs AI501287 membrane bound O-acyltransferase domain containing 2 Mboat2 313997 NM_001108016 0008654 // phospholipid biosynthetic process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1379076_at BE328961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE328961 /DB_XREF=gi:9202737 /DB_XREF=hq35c10.x1 /CLONE=IMAGE:3121362 /FEA=EST /CNT=3 /TID=Rn.12349.1 /TIER=ConsEnd /STK=3 /UG=Rn.12349 /UG_TITLE=ESTs BE328961 1379077_at BE102740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102740 /DB_XREF=gi:8494839 /DB_XREF=UI-R-BT1-aqp-e-12-0-UI.s1 /CLONE=UI-R-BT1-aqp-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.38070.1 /TIER=ConsEnd /STK=3 /UG=Rn.38070 /UG_TITLE=ESTs BE102740 family with sequence similarity 181, member B Fam181b 499205 NM_001109150 1379078_at BE105838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105838 /DB_XREF=gi:8497940 /DB_XREF=UI-R-BX0-ary-g-05-0-UI.s1 /CLONE=UI-R-BX0-ary-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.50754.1 /TIER=ConsEnd /STK=3 /UG=Rn.50754 /UG_TITLE=ESTs BE105838 1379079_at AI501684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501684 /DB_XREF=gi:4399535 /DB_XREF=UI-R-C0-iv-c-03-0-UI.s1 /CLONE=UI-R-C0-iv-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.78376.1 /TIER=ConsEnd /STK=3 /UG=Rn.78376 /UG_TITLE=ESTs AI501684 hypothetical protein LOC679475 LOC679475 679475 XM_001056542 1379080_at AI412555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412555 /DB_XREF=gi:4256059 /DB_XREF=EST240854 /CLONE=RBRDJ53 /FEA=EST /CNT=3 /TID=Rn.26847.1 /TIER=ConsEnd /STK=3 /UG=Rn.26847 /UG_TITLE=ESTs AI412555 1379081_at BE096731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096731 /DB_XREF=gi:8487662 /DB_XREF=UI-R-BU0-apm-a-09-0-UI.s1 /CLONE=UI-R-BU0-apm-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.44941.1 /TIER=ConsEnd /STK=3 /UG=Rn.44941 /UG_TITLE=ESTs BE096731 NADPH oxidase organizer 1 Noxo1 302976 NM_001106986 0006801 // superoxide metabolic process // not recorded /// 0007154 // cell communication // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded 0043020 // NADPH oxidase complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016176 // superoxide-generating NADPH oxidase activator activity // not recorded /// 0019899 // enzyme binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1379082_at BF409665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409665 /DB_XREF=gi:11397640 /DB_XREF=UI-R-CA1-bln-c-01-0-UI.s1 /CLONE=UI-R-CA1-bln-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.61435.1 /TIER=ConsEnd /STK=3 /UG=Rn.61435 /UG_TITLE=ESTs BF409665 Furry homolog (Drosophila) Fry 304244 NM_001170398 1379083_at AI029510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029510 /DB_XREF=gi:4299060 /DB_XREF=UI-R-C0-iq-a-10-0-UI.s1 /CLONE=UI-R-C0-iq-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.12845.1 /TIER=ConsEnd /STK=3 /UG=Rn.12845 /UG_TITLE=ESTs AI029510 adenosine deaminase, tRNA-specific 3, TAD3 homolog (S. cerevisiae) Adat3 100125374 NM_001103361 0008033 // tRNA processing // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379084_at AW533710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533710 /DB_XREF=gi:7176124 /DB_XREF=UI-R-BU0-anh-b-07-0-UI.s1 /CLONE=UI-R-BU0-anh-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.48165.1 /TIER=ConsEnd /STK=3 /UG=Rn.48165 /UG_TITLE=ESTs AW533710 DDB1 and CUL4 associated factor 5 Dcaf5 314273 NM_001100718 /// XM_001080939 /// XM_234345 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0080008 // CUL4 RING ubiquitin ligase complex // inferred from electronic annotation /// 0080008 // CUL4 RING ubiquitin ligase complex // not recorded 1379085_at BF396507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396507 /DB_XREF=gi:11381481 /DB_XREF=UI-R-BS2-bdy-h-10-0-UI.s1 /CLONE=UI-R-BS2-bdy-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.50691.1 /TIER=ConsEnd /STK=3 /UG=Rn.50691 /UG_TITLE=ESTs BF396507 similar to mKIAA0978 protein RGD1561878 311553 XM_002726270 /// XM_002729218 1379086_at BE107082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107082 /DB_XREF=gi:8499187 /DB_XREF=UI-R-BS1-ayp-f-05-0-UI.s1 /CLONE=UI-R-BS1-ayp-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.51107.1 /TIER=ConsEnd /STK=3 /UG=Rn.51107 /UG_TITLE=ESTs BE107082 1379087_at BM387886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387886 /DB_XREF=gi:18187939 /DB_XREF=UI-R-CN1-cjk-l-07-0-UI.s1 /CLONE=UI-R-CN1-cjk-l-07-0-UI /FEA=EST /CNT=3 /TID=Rn.32596.1 /TIER=ConsEnd /STK=3 /UG=Rn.32596 /UG_TITLE=ESTs BM387886 family with sequence similarity 109, member B Fam109b 688685 NM_001130511 1379088_x_at BF392858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392858 /DB_XREF=gi:11377717 /DB_XREF=UI-R-CA0-bfq-a-11-0-UI.s1 /CLONE=UI-R-CA0-bfq-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.61681.1 /TIER=ConsEnd /STK=3 /UG=Rn.61681 /UG_TITLE=ESTs BF392858 1379089_at BM382838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM382838 /DB_XREF=gi:18182891 /DB_XREF=UI-R-BT1-bko-d-05-0-UI.s1 /CLONE=UI-R-BT1-bko-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.61288.1 /TIER=ConsEnd /STK=3 /UG=Rn.61288 /UG_TITLE=ESTs BM382838 1379090_at BE109030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109030 /DB_XREF=gi:8501135 /DB_XREF=UI-R-BS1-azc-b-10-0-UI.s1 /CLONE=UI-R-BS1-azc-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.33155.1 /TIER=ConsEnd /STK=3 /UG=Rn.33155 /UG_TITLE=ESTs BE109030 1379091_at BF551427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551427 /DB_XREF=gi:11661157 /DB_XREF=UI-R-C1-ju-g-10-0-UI.r1 /CLONE=UI-R-C1-ju-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.16152.1 /TIER=ConsEnd /STK=3 /UG=Rn.16152 /UG_TITLE=ESTs BF551427 similar to D8Ertd354e protein RGD1560755 361165 XR_085644 /// XR_086050 1379092_at AI712997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712997 /DB_XREF=gi:5016797 /DB_XREF=UI-R-Y0-abc-a-06-0-UI.s1 /CLONE=UI-R-Y0-abc-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.40779.1 /TIER=ConsEnd /STK=3 /UG=Rn.40779 /UG_TITLE=ESTs AI712997 1379093_at BF404377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404377 /DB_XREF=gi:11392352 /DB_XREF=UI-R-CA1-bie-e-03-0-UI.s1 /CLONE=UI-R-CA1-bie-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.44154.1 /TIER=ConsEnd /STK=3 /UG=Rn.44154 /UG_TITLE=ESTs BF404377 1379094_at BF386909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386909 /DB_XREF=gi:11371733 /DB_XREF=UI-R-CA1-bbj-a-04-0-UI.s1 /CLONE=UI-R-CA1-bbj-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.45595.1 /TIER=ConsEnd /STK=3 /UG=Rn.45595 /UG_TITLE=ESTs BF386909 1379095_at BF388738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388738 /DB_XREF=gi:11373562 /DB_XREF=UI-R-BS2-bde-a-03-0-UI.s1 /CLONE=UI-R-BS2-bde-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.56809.1 /TIER=ConsEnd /STK=3 /UG=Rn.56809 /UG_TITLE=ESTs BF388738 1379096_at AI070835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070835 /DB_XREF=gi:3397086 /DB_XREF=UI-R-C2-mv-e-01-0-UI.s1 /CLONE=UI-R-C2-mv-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.19379.1 /TIER=ConsEnd /STK=3 /UG=Rn.19379 /UG_TITLE=ESTs AI070835 1379097_at BF416779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416779 /DB_XREF=gi:11404768 /DB_XREF=UI-R-CN0-bkz-h-04-0-UI.s1 /CLONE=UI-R-CN0-bkz-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.26730.1 /TIER=ConsEnd /STK=3 /UG=Rn.26730 /UG_TITLE=ESTs BF416779 zinc finger protein 9 Zfp9 100158232 NM_001127635 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379098_at AI071602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071602 /DB_XREF=gi:3397817 /DB_XREF=UI-R-C2-mw-a-06-0-UI.s1 /CLONE=UI-R-C2-mw-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.21958.1 /TIER=ConsEnd /STK=3 /UG=Rn.21958 /UG_TITLE=ESTs AI071602 1379099_at AI501520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501520 /DB_XREF=gi:4399371 /DB_XREF=UI-R-C2p-sc-a-07-0-UI.s1 /CLONE=UI-R-C2p-sc-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.35525.1 /TIER=ConsEnd /STK=3 /UG=Rn.35525 /UG_TITLE=ESTs AI501520 1379100_at BF407311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407311 /DB_XREF=gi:11395286 /DB_XREF=UI-R-BJ2-bqe-d-04-0-UI.s1 /CLONE=UI-R-BJ2-bqe-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.38419.1 /TIER=ConsEnd /STK=3 /UG=Rn.38419 /UG_TITLE=ESTs BF407311 similar to transcriptional regulating protein 132 RGD1306119 314306 NM_001169116 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // inferred from electronic annotation 1379101_at BE114021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114021 /DB_XREF=gi:8506126 /DB_XREF=UI-R-CA0-axn-b-05-0-UI.s1 /CLONE=UI-R-CA0-axn-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.41423.1 /TIER=ConsEnd /STK=3 /UG=Rn.41423 /UG_TITLE=ESTs, Weakly similar to DDX9 MOUSE ATP-DEPENDENT RNA HELICASE A (M.musculus) BE114021 DEAH (Asp-Glu-Ala-His) box polypeptide 36 Dhx36 310461 NM_001107678 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1379102_at BE108842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108842 /DB_XREF=gi:8500947 /DB_XREF=UI-R-BS1-ayz-a-07-0-UI.s1 /CLONE=UI-R-BS1-ayz-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.50688.1 /TIER=ConsEnd /STK=3 /UG=Rn.50688 /UG_TITLE=ESTs BE108842 1379103_at BF406246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406246 /DB_XREF=gi:11394221 /DB_XREF=UI-R-CA1-bjf-k-14-0-UI.s1 /CLONE=UI-R-CA1-bjf-k-14-0-UI /FEA=EST /CNT=3 /TID=Rn.59850.1 /TIER=ConsEnd /STK=3 /UG=Rn.59850 /UG_TITLE=ESTs BF406246 1379104_at BF400861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400861 /DB_XREF=gi:11388836 /DB_XREF=UI-R-CA0-bhg-f-08-0-UI.s1 /CLONE=UI-R-CA0-bhg-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.41809.1 /TIER=ConsEnd /STK=3 /UG=Rn.41809 /UG_TITLE=ESTs BF400861 1379105_at BF415420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415420 /DB_XREF=gi:11403444 /DB_XREF=UI-R-CA1-bjz-a-09-0-UI.s1 /CLONE=UI-R-CA1-bjz-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.49339.1 /TIER=ConsEnd /STK=3 /UG=Rn.49339 /UG_TITLE=ESTs BF415420 1379106_at BF400615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400615 /DB_XREF=gi:11388590 /DB_XREF=UI-R-CA0-bhd-e-03-0-UI.s1 /CLONE=UI-R-CA0-bhd-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.53126.1 /TIER=ConsEnd /STK=3 /UG=Rn.53126 /UG_TITLE=ESTs BF400615 1379107_at BF416861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416861 /DB_XREF=gi:11404850 /DB_XREF=UI-R-CA0-bkv-h-09-0-UI.s1 /CLONE=UI-R-CA0-bkv-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.63168.1 /TIER=ConsEnd /STK=3 /UG=Rn.63168 /UG_TITLE=ESTs BF416861 1379108_at AA925520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925520 /DB_XREF=gi:4236711 /DB_XREF=UI-R-A1-em-e-06-0-UI.s1 /CLONE=UI-R-A1-em-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.15543.1 /TIER=ConsEnd /STK=3 /UG=Rn.15543 /UG_TITLE=ESTs AA925520 pleckstrin and Sec7 domain containing 3 Psd3 306380 XM_001070777 /// XM_224759 0032012 // regulation of ARF protein signal transduction // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded 0005086 // ARF guanyl-nucleotide exchange factor activity // not recorded /// 0005086 // ARF guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1379109_at BE110398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110398 /DB_XREF=gi:8502503 /DB_XREF=UI-R-BJ1-aun-e-07-0-UI.s1 /CLONE=UI-R-BJ1-aun-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.38735.1 /TIER=ConsEnd /STK=3 /UG=Rn.38735 /UG_TITLE=ESTs BE110398 1379110_at AI763769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763769 /DB_XREF=gi:5209704 /DB_XREF=UI-R-Y0-acn-g-11-0-UI.s1 /CLONE=UI-R-Y0-acn-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.41945.1 /TIER=ConsEnd /STK=3 /UG=Rn.41945 /UG_TITLE=ESTs AI763769 1379111_at AW252080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252080 /DB_XREF=gi:6595671 /DB_XREF=UI-R-BJ0-adj-h-10-0-UI.s1 /CLONE=UI-R-BJ0-adj-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.44761.1 /TIER=ConsEnd /STK=3 /UG=Rn.44761 /UG_TITLE=ESTs, Highly similar to TRANSCRIPTIONAL REPRESSOR PROTEIN YY1 (M.musculus) AW252080 YY1 transcription factor Yy1 24919 NM_173290 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0045939 // negative regulation of steroid metabolic process // non-traceable author statement /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from direct assay /// 0005667 // transcription factor complex // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0031519 // PcG protein complex // inferred from electronic annotation /// 0031519 // PcG protein complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016566 // specific transcriptional repressor activity // inferred from direct assay /// 0016566 // specific transcriptional repressor activity // not recorded 1379112_at AW528085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528085 /DB_XREF=gi:7170499 /DB_XREF=UI-R-BT1-akh-e-05-0-UI.s1 /CLONE=UI-R-BT1-akh-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.46766.1 /TIER=ConsEnd /STK=3 /UG=Rn.46766 /UG_TITLE=ESTs, Moderately similar to B42997 retinoblastoma-associated protein 2 (H.sapiens) AW528085 AT rich interactive domain 4A (Rbp1 like) Arid4a 314205 NM_001108029 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0000785 // chromatin // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded 1379113_at BE119226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119226 /DB_XREF=gi:8511331 /DB_XREF=UI-R-CA0-azz-h-11-0-UI.s1 /CLONE=UI-R-CA0-azz-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.47594.1 /TIER=ConsEnd /STK=3 /UG=Rn.47594 /UG_TITLE=ESTs BE119226 1379114_at BF412325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412325 /DB_XREF=gi:11400314 /DB_XREF=UI-R-BT1-bnc-c-12-0-UI.s1 /CLONE=UI-R-BT1-bnc-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.49081.1 /TIER=ConsEnd /STK=3 /UG=Rn.49081 /UG_TITLE=ESTs BF412325 1379115_at BF407646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407646 /DB_XREF=gi:11395621 /DB_XREF=UI-R-BJ2-bqu-g-01-0-UI.s1 /CLONE=UI-R-BJ2-bqu-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.50193.1 /TIER=ConsEnd /STK=3 /UG=Rn.50193 /UG_TITLE=ESTs BF407646 1379116_at BM386353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386353 /DB_XREF=gi:18186406 /DB_XREF=UI-R-CN1-cjf-p-23-0-UI.s1 /CLONE=UI-R-CN1-cjf-p-23-0-UI /FEA=EST /CNT=3 /TID=Rn.51176.1 /TIER=ConsEnd /STK=3 /UG=Rn.51176 /UG_TITLE=ESTs BM386353 1379117_at BF415415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415415 /DB_XREF=gi:11403439 /DB_XREF=UI-R-CA1-bjz-a-04-0-UI.s1 /CLONE=UI-R-CA1-bjz-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.52558.1 /TIER=ConsEnd /STK=3 /UG=Rn.52558 /UG_TITLE=ESTs BF415415 1379118_at AI072498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072498 /DB_XREF=gi:3398692 /DB_XREF=UI-R-C2-nm-g-05-0-UI.s1 /CLONE=UI-R-C2-nm-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.54092.1 /TIER=ConsEnd /STK=3 /UG=Rn.54092 /UG_TITLE=ESTs AI072498 1379119_at BF393042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393042 /DB_XREF=gi:11377902 /DB_XREF=UI-R-CA0-bgp-d-02-0-UI.s1 /CLONE=UI-R-CA0-bgp-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.57967.1 /TIER=ConsEnd /STK=3 /UG=Rn.57967 /UG_TITLE=ESTs BF393042 1379120_at BF393971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393971 /DB_XREF=gi:11378876 /DB_XREF=UI-R-CA0-bgx-h-03-0-UI.s1 /CLONE=UI-R-CA0-bgx-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.61298.1 /TIER=ConsEnd /STK=3 /UG=Rn.61298 /UG_TITLE=ESTs BF393971 1379121_at BE102420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102420 /DB_XREF=gi:8494519 /DB_XREF=UI-R-BT1-aqm-d-09-0-UI.s1 /CLONE=UI-R-BT1-aqm-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.62558.1 /TIER=ConsEnd /STK=3 /UG=Rn.62558 /UG_TITLE=ESTs BE102420 Rab interacting lysosomal protein-like 1 Rilpl1 304469 NM_001191665 /// XM_001079000 /// XM_002724817 /// XM_222150 1379122_at BF390811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390811 /DB_XREF=gi:11375658 /DB_XREF=UI-R-CA1-bcp-f-12-0-UI.s1 /CLONE=UI-R-CA1-bcp-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.63156.1 /TIER=ConsEnd /STK=3 /UG=Rn.63156 /UG_TITLE=ESTs, Moderately similar to sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (sem (Mus musculus) (M.musculus) BF390811 1379123_at BF388562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388562 /DB_XREF=gi:11373386 /DB_XREF=UI-R-CA1-bda-h-12-0-UI.s1 /CLONE=UI-R-CA1-bda-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.64276.1 /TIER=ConsEnd /STK=3 /UG=Rn.64276 /UG_TITLE=ESTs, Weakly similar to I52657 gene SEZ-6 (M.musculus) BF388562 seizure related 6 homolog (mouse)-like 2 Sez6l2 308988 NM_001107550 1379124_at BE103417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103417 /DB_XREF=gi:8495516 /DB_XREF=UI-R-BX0-arb-g-06-0-UI.s1 /CLONE=UI-R-BX0-arb-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.8745.1 /TIER=ConsEnd /STK=3 /UG=Rn.8745 /UG_TITLE=ESTs BE103417 mCG17902-like LOC100365150 100365150 XR_085911 1379125_at BF397335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397335 /DB_XREF=gi:11382318 /DB_XREF=UI-R-BS2-bex-b-08-0-UI.s1 /CLONE=UI-R-BS2-bex-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.23714.1 /TIER=ConsEnd /STK=3 /UG=Rn.23714 /UG_TITLE=ESTs, Highly similar to B Chain B, Neuronal Synaptic Fusion Complex (R.norvegicus) BF397335 1379126_at AI555608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555608 /DB_XREF=gi:4487971 /DB_XREF=UI-R-C2p-qs-h-05-0-UI.s1 /CLONE=UI-R-C2p-qs-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.38799.1 /TIER=ConsEnd /STK=3 /UG=Rn.38799 /UG_TITLE=ESTs AI555608 1379127_at AW532225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532225 /DB_XREF=gi:7174639 /DB_XREF=UI-R-C4-alj-h-09-0-UI.s1 /CLONE=UI-R-C4-alj-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.39072.1 /TIER=ConsEnd /STK=3 /UG=Rn.39072 /UG_TITLE=ESTs AW532225 1379128_at AW252949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252949 /DB_XREF=gi:6596540 /DB_XREF=UI-R-BJ0-adk-e-11-0-UI.s1 /CLONE=UI-R-BJ0-adk-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.40720.1 /TIER=ConsEnd /STK=3 /UG=Rn.40720 /UG_TITLE=ESTs AW252949 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1379129_at AW528596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528596 /DB_XREF=gi:7171010 /DB_XREF=UI-R-BO1-ajr-b-10-0-UI.s1 /CLONE=UI-R-BO1-ajr-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.46277.1 /TIER=ConsEnd /STK=3 /UG=Rn.46277 /UG_TITLE=ESTs AW528596 similar to 40S ribosomal protein S21 LOC502371 502371 XM_001053958 1379130_at BF396303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396303 /DB_XREF=gi:11381275 /DB_XREF=UI-R-BS2-bdw-f-03-0-UI.s1 /CLONE=UI-R-BS2-bdw-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.49049.1 /TIER=ConsEnd /STK=3 /UG=Rn.49049 /UG_TITLE=ESTs BF396303 1379131_at BE102860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102860 /DB_XREF=gi:8494959 /DB_XREF=UI-R-BT1-aqq-b-11-0-UI.s1 /CLONE=UI-R-BT1-aqq-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.49085.1 /TIER=ConsEnd /STK=3 /UG=Rn.49085 /UG_TITLE=ESTs BE102860 Similar to KIAA2012 protein RGD1562029 501150 1379132_at BE107317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107317 /DB_XREF=gi:8499422 /DB_XREF=UI-R-BS1-ays-d-04-0-UI.s1 /CLONE=UI-R-BS1-ays-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.49203.1 /TIER=ConsEnd /STK=3 /UG=Rn.49203 /UG_TITLE=ESTs BE107317 1379133_at BE099985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099985 /DB_XREF=gi:8491869 /DB_XREF=UI-R-BJ1-atr-d-08-0-UI.s1 /CLONE=UI-R-BJ1-atr-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.49787.1 /TIER=ConsEnd /STK=3 /UG=Rn.49787 /UG_TITLE=ESTs BE099985 1379134_at BE099532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099532 /DB_XREF=gi:8491410 /DB_XREF=UI-R-BJ1-atj-d-12-0-UI.s1 /CLONE=UI-R-BJ1-atj-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.49881.1 /TIER=ConsEnd /STK=3 /UG=Rn.49881 /UG_TITLE=ESTs BE099532 similar to beta-1,3-N-acetylglucosaminyltransferase bGnT-5 RGD1565012 311882 XM_001080213 /// XM_231163 0006486 // protein glycosylation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0008378 // galactosyltransferase activity // inferred from electronic annotation 1379135_at BE112728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112728 /DB_XREF=gi:8504833 /DB_XREF=UI-R-BJ1-avo-b-05-0-UI.s1 /CLONE=UI-R-BJ1-avo-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.52075.1 /TIER=ConsEnd /STK=3 /UG=Rn.52075 /UG_TITLE=ESTs BE112728 Tubulin tyrosine ligase-like family, member 3 Ttll3 362415 NM_001108640 0006464 // protein modification process // inferred from electronic annotation /// 0018094 // protein polyglycylation // not recorded 0005929 // cilium // not recorded /// 0015630 // microtubule cytoskeleton // not recorded /// 0035085 // cilium axoneme // not recorded 0004835 // tubulin-tyrosine ligase activity // inferred from electronic annotation /// 0070735 // protein-glycine ligase activity // not recorded /// 0070736 // protein-glycine ligase activity, initiating // not recorded 1379136_at BF410566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410566 /DB_XREF=gi:11398541 /DB_XREF=UI-R-CA0-bma-c-04-0-UI.s1 /CLONE=UI-R-CA0-bma-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.52651.1 /TIER=ConsEnd /STK=3 /UG=Rn.52651 /UG_TITLE=ESTs BF410566 1379137_at BF387378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387378 /DB_XREF=gi:11372202 /DB_XREF=UI-R-CA1-bbr-g-04-0-UI.s1 /CLONE=UI-R-CA1-bbr-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.56489.1 /TIER=ConsEnd /STK=3 /UG=Rn.56489 /UG_TITLE=ESTs BF387378 1379138_at BF391688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391688 /DB_XREF=gi:11376542 /DB_XREF=UI-R-CA1-bct-c-11-0-UI.s1 /CLONE=UI-R-CA1-bct-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.57596.1 /TIER=ConsEnd /STK=3 /UG=Rn.57596 /UG_TITLE=ESTs BF391688 1379139_x_at BF406217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406217 /DB_XREF=gi:11394192 /DB_XREF=UI-R-CA1-bjf-e-20-0-UI.s1 /CLONE=UI-R-CA1-bjf-e-20-0-UI /FEA=EST /CNT=3 /TID=Rn.58664.1 /TIER=ConsEnd /STK=3 /UG=Rn.58664 /UG_TITLE=ESTs, Weakly similar to S12207 hypothetical protein (M.musculus) BF406217 1379140_at BF397054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397054 /DB_XREF=gi:11382037 /DB_XREF=UI-R-BS2-beh-e-03-0-UI.s1 /CLONE=UI-R-BS2-beh-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.58744.1 /TIER=ConsEnd /STK=3 /UG=Rn.58744 /UG_TITLE=ESTs BF397054 1379141_at BF402028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402028 /DB_XREF=gi:11390003 /DB_XREF=UI-R-CA1-bim-a-10-0-UI.s1 /CLONE=UI-R-CA1-bim-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.61173.1 /TIER=ConsEnd /STK=3 /UG=Rn.61173 /UG_TITLE=ESTs BF402028 1379142_at BF393107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393107 /DB_XREF=gi:11377967 /DB_XREF=UI-R-CA0-bgu-g-03-0-UI.s1 /CLONE=UI-R-CA0-bgu-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.61344.1 /TIER=ConsEnd /STK=3 /UG=Rn.61344 /UG_TITLE=ESTs BF393107 1379143_at BF409564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409564 /DB_XREF=gi:11397539 /DB_XREF=UI-R-CA1-bll-g-11-0-UI.s1 /CLONE=UI-R-CA1-bll-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.61398.1 /TIER=ConsEnd /STK=3 /UG=Rn.61398 /UG_TITLE=ESTs BF409564 1379144_at BF393973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393973 /DB_XREF=gi:11378878 /DB_XREF=UI-R-CA0-bgx-h-05-0-UI.s1 /CLONE=UI-R-CA0-bgx-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.61517.1 /TIER=ConsEnd /STK=3 /UG=Rn.61517 /UG_TITLE=ESTs, Weakly similar to RAH1 MOUSE RAS-RELATED PROTEIN RAH (M.musculus) BF393973 RAB36, member RAS oncogene family Rab36 690407 NM_001109589 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1379145_at BF386266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386266 /DB_XREF=gi:11371090 /DB_XREF=UI-R-CA1-bbc-e-09-0-UI.s1 /CLONE=UI-R-CA1-bbc-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.61891.1 /TIER=ConsEnd /STK=3 /UG=Rn.61891 /UG_TITLE=ESTs BF386266 1379146_at BF411772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411772 /DB_XREF=gi:11399761 /DB_XREF=UI-R-BT1-bmq-h-10-0-UI.s1 /CLONE=UI-R-BT1-bmq-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.61919.1 /TIER=ConsEnd /STK=3 /UG=Rn.61919 /UG_TITLE=ESTs BF411772 1379147_at BF412388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412388 /DB_XREF=gi:11400377 /DB_XREF=UI-R-BT1-bna-e-05-0-UI.s1 /CLONE=UI-R-BT1-bna-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.62074.1 /TIER=ConsEnd /STK=3 /UG=Rn.62074 /UG_TITLE=ESTs BF412388 potassium channel, subfamily T, member 1 Kcnt1 60444 NM_021853 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from direct assay /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from direct assay /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0015269 // calcium-activated potassium channel activity // inferred from electronic annotation 1379148_at BF404371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404371 /DB_XREF=gi:11392346 /DB_XREF=UI-R-CA1-bie-d-03-0-UI.s1 /CLONE=UI-R-CA1-bie-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.62348.1 /TIER=ConsEnd /STK=3 /UG=Rn.62348 /UG_TITLE=ESTs BF404371 1379149_at BF404318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404318 /DB_XREF=gi:11392293 /DB_XREF=UI-R-CA1-bjd-k-17-0-UI.s1 /CLONE=UI-R-CA1-bjd-k-17-0-UI /FEA=EST /CNT=3 /TID=Rn.62752.1 /TIER=ConsEnd /STK=3 /UG=Rn.62752 /UG_TITLE=ESTs BF404318 1379150_at BF404462 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404462 /DB_XREF=gi:11392437 /DB_XREF=UI-R-CA1-bif-f-04-0-UI.s1 /CLONE=UI-R-CA1-bif-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.62926.1 /TIER=ConsEnd /STK=3 /UG=Rn.62926 /UG_TITLE=ESTs BF404462 1379151_at BF410377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410377 /DB_XREF=gi:11398352 /DB_XREF=UI-R-CA1-bjw-g-09-0-UI.s1 /CLONE=UI-R-CA1-bjw-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.62995.1 /TIER=ConsEnd /STK=3 /UG=Rn.62995 /UG_TITLE=ESTs BF410377 1379152_at BF404953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404953 /DB_XREF=gi:11392928 /DB_XREF=UI-R-CA1-bij-f-09-0-UI.s1 /CLONE=UI-R-CA1-bij-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.63165.1 /TIER=ConsEnd /STK=3 /UG=Rn.63165 /UG_TITLE=ESTs BF404953 1379153_at BF387484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387484 /DB_XREF=gi:11372308 /DB_XREF=UI-R-CA1-bbm-h-12-0-UI.s1 /CLONE=UI-R-CA1-bbm-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.63297.1 /TIER=ConsEnd /STK=3 /UG=Rn.63297 /UG_TITLE=ESTs BF387484 1379154_at BE119212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119212 /DB_XREF=gi:8511317 /DB_XREF=UI-R-CA0-azz-g-07-0-UI.s1 /CLONE=UI-R-CA0-azz-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.63364.1 /TIER=ConsEnd /STK=3 /UG=Rn.63364 /UG_TITLE=ESTs BE119212 1379155_at BF404422 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404422 /DB_XREF=gi:11392397 /DB_XREF=UI-R-CA1-bif-b-04-0-UI.s1 /CLONE=UI-R-CA1-bif-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.63392.1 /TIER=ConsEnd /STK=3 /UG=Rn.63392 /UG_TITLE=ESTs BF404422 1379156_at BF400248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400248 /DB_XREF=gi:11385259 /DB_XREF=UI-R-CA1-bjc-h-09-0-UI.s1 /CLONE=UI-R-CA1-bjc-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.63552.1 /TIER=ConsEnd /STK=3 /UG=Rn.63552 /UG_TITLE=ESTs BF400248 1379157_at BF419752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419752 /DB_XREF=gi:11407741 /DB_XREF=UI-R-CA0-bpf-g-11-0-UI.s1 /CLONE=UI-R-CA0-bpf-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.63629.1 /TIER=ConsEnd /STK=3 /UG=Rn.63629 /UG_TITLE=ESTs BF419752 1379158_at BF420118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420118 /DB_XREF=gi:11408107 /DB_XREF=UI-R-BJ2-bpj-b-03-0-UI.s1 /CLONE=UI-R-BJ2-bpj-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.63685.1 /TIER=ConsEnd /STK=3 /UG=Rn.63685 /UG_TITLE=ESTs BF420118 1379159_at BF404412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404412 /DB_XREF=gi:11392387 /DB_XREF=UI-R-CA1-bie-h-12-0-UI.s1 /CLONE=UI-R-CA1-bie-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.64372.1 /TIER=ConsEnd /STK=3 /UG=Rn.64372 /UG_TITLE=ESTs BF404412 ORAI calcium release-activated calcium modulator 2 Orai2 304592 NM_001170403 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379160_at BF399572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399572 /DB_XREF=gi:11384580 /DB_XREF=UI-R-CA0-bht-b-08-0-UI.s2 /CLONE=UI-R-CA0-bht-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.26603.1 /TIER=ConsEnd /STK=3 /UG=Rn.26603 /UG_TITLE=ESTs BF399572 1379161_at AI556639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556639 /DB_XREF=gi:4489002 /DB_XREF=UI-R-C2p-ri-f-12-0-UI.s1 /CLONE=UI-R-C2p-ri-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.29310.1 /TIER=ConsEnd /STK=3 /UG=Rn.29310 /UG_TITLE=ESTs AI556639 1379162_at AW531477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531477 /DB_XREF=gi:7173891 /DB_XREF=UI-R-BO1-aji-d-12-0-UI.s1 /CLONE=UI-R-BO1-aji-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.46701.1 /TIER=ConsEnd /STK=3 /UG=Rn.46701 /UG_TITLE=ESTs AW531477 1379163_at BE115530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115530 /DB_XREF=gi:8507635 /DB_XREF=UI-R-BJ1-avw-a-02-0-UI.s1 /CLONE=UI-R-BJ1-avw-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.49183.1 /TIER=ConsEnd /STK=3 /UG=Rn.49183 /UG_TITLE=ESTs BE115530 bromodomain adjacent to zinc finger domain, 1B Baz1b 368002 NM_001191916 /// XM_001077467 /// XM_347166 0003007 // heart morphogenesis // not recorded /// 0006302 // double-strand break repair // not recorded /// 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006333 // chromatin assembly or disassembly // not recorded /// 0006337 // nucleosome disassembly // not recorded /// 0006338 // chromatin remodeling // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0016572 // histone phosphorylation // not recorded /// 0034725 // DNA replication-dependent nucleosome disassembly // inferred from electronic annotation /// 0034725 // DNA replication-dependent nucleosome disassembly // not recorded /// 0043044 // ATP-dependent chromatin remodeling // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // not recorded /// 0048096 // chromatin-mediated maintenance of transcription // not recorded 0000793 // condensed chromosome // inferred from electronic annotation /// 0000793 // condensed chromosome // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005721 // centromeric heterochromatin // inferred from electronic annotation /// 0005721 // centromeric heterochromatin // not recorded /// 0016585 // chromatin remodeling complex // not recorded /// 0043596 // nuclear replication fork // not recorded /// 0070603 // SWI/SNF-type complex // inferred from electronic annotation /// 0070603 // SWI/SNF-type complex // not recorded 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0030546 // receptor activator activity // inferred from electronic annotation /// 0030546 // receptor activator activity // not recorded /// 0032947 // protein complex scaffold // inferred from electronic annotation /// 0032947 // protein complex scaffold // not recorded /// 0035173 // histone kinase activity // inferred from electronic annotation /// 0035173 // histone kinase activity // not recorded /// 0042393 // histone binding // not recorded /// 0042809 // vitamin D receptor binding // inferred from electronic annotation /// 0042809 // vitamin D receptor binding // not recorded /// 0070577 // histone acetyl-lysine binding // inferred from electronic annotation /// 0070577 // histone acetyl-lysine binding // not recorded 1379164_at BE117672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117672 /DB_XREF=gi:8509777 /DB_XREF=UI-R-BS1-aze-e-10-0-UI.s1 /CLONE=UI-R-BS1-aze-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.49756.1 /TIER=ConsEnd /STK=3 /UG=Rn.49756 /UG_TITLE=ESTs BE117672 1379165_at BE098949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098949 /DB_XREF=gi:8490823 /DB_XREF=UI-R-BJ1-atg-f-08-0-UI.s1 /CLONE=UI-R-BJ1-atg-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.49837.1 /TIER=ConsEnd /STK=3 /UG=Rn.49837 /UG_TITLE=ESTs BE098949 1379166_at BF391720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391720 /DB_XREF=gi:11376574 /DB_XREF=UI-R-CA1-bct-f-07-0-UI.s1 /CLONE=UI-R-CA1-bct-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.49971.1 /TIER=ConsEnd /STK=3 /UG=Rn.49971 /UG_TITLE=ESTs BF391720 1379167_at BF390899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390899 /DB_XREF=gi:11375746 /DB_XREF=UI-R-CA1-bci-g-09-0-UI.s1 /CLONE=UI-R-CA1-bci-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.57319.1 /TIER=ConsEnd /STK=3 /UG=Rn.57319 /UG_TITLE=ESTs BF390899 1379168_at BF394273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394273 /DB_XREF=gi:11379137 /DB_XREF=UI-R-CA0-bgr-a-04-0-UI.s1 /CLONE=UI-R-CA0-bgr-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.57532.1 /TIER=ConsEnd /STK=3 /UG=Rn.57532 /UG_TITLE=ESTs BF394273 1379169_at BF399958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399958 /DB_XREF=gi:11384969 /DB_XREF=UI-R-CA1-bia-a-06-0-UI.s1 /CLONE=UI-R-CA1-bia-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.57790.1 /TIER=ConsEnd /STK=3 /UG=Rn.57790 /UG_TITLE=ESTs, Weakly similar to B40141 mitochondrial solute carrier protein homolog - rat (R.norvegicus) BF399958 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 Slc25a23 301113 NM_001106873 0007165 // signal transduction // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1379170_at BF393059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393059 /DB_XREF=gi:11377919 /DB_XREF=UI-R-CA0-bgp-h-01-0-UI.s1 /CLONE=UI-R-CA0-bgp-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.57974.1 /TIER=ConsEnd /STK=3 /UG=Rn.57974 /UG_TITLE=ESTs BF393059 1379171_at BF388150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388150 /DB_XREF=gi:11372974 /DB_XREF=UI-R-CA1-bby-h-02-0-UI.s1 /CLONE=UI-R-CA1-bby-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.58271.1 /TIER=ConsEnd /STK=3 /UG=Rn.58271 /UG_TITLE=ESTs, Weakly similar to PH0217 reverse transcriptase-like protein - rat (R.norvegicus) BF388150 1379172_at BF405387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405387 /DB_XREF=gi:11393362 /DB_XREF=UI-R-CA1-bit-f-07-0-UI.s1 /CLONE=UI-R-CA1-bit-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.58277.1 /TIER=ConsEnd /STK=3 /UG=Rn.58277 /UG_TITLE=ESTs BF405387 1379173_at BF394515 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394515 /DB_XREF=gi:11379381 /DB_XREF=UI-R-CA0-bfw-g-06-0-UI.s1 /CLONE=UI-R-CA0-bfw-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.58296.1 /TIER=ConsEnd /STK=3 /UG=Rn.58296 /UG_TITLE=ESTs, Weakly similar to WDR9_HUMAN WD-REPEAT PROTEIN 9 (H.sapiens) BF394515 1379174_at BE121123 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121123 /DB_XREF=gi:8513228 /DB_XREF=UI-R-CA0-bau-c-12-0-UI.s1 /CLONE=UI-R-CA0-bau-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.60020.1 /TIER=ConsEnd /STK=3 /UG=Rn.60020 /UG_TITLE=ESTs BE121123 1379175_at BF388224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388224 /DB_XREF=gi:11373048 /DB_XREF=UI-R-CA1-bca-g-05-0-UI.s1 /CLONE=UI-R-CA1-bca-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.60176.1 /TIER=ConsEnd /STK=3 /UG=Rn.60176 /UG_TITLE=ESTs BF388224 1379176_at BF389083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389083 /DB_XREF=gi:11373910 /DB_XREF=UI-R-BS2-bdh-f-04-0-UI.s1 /CLONE=UI-R-BS2-bdh-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.60454.1 /TIER=ConsEnd /STK=3 /UG=Rn.60454 /UG_TITLE=ESTs BF389083 1379177_at BF404294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404294 /DB_XREF=gi:11392269 /DB_XREF=UI-R-CA1-bjd-g-17-0-UI.s1 /CLONE=UI-R-CA1-bjd-g-17-0-UI /FEA=EST /CNT=3 /TID=Rn.60472.1 /TIER=ConsEnd /STK=3 /UG=Rn.60472 /UG_TITLE=ESTs, Weakly similar to COG3 RAT STROMELYSIN-1 PRECURSOR (R.norvegicus) BF404294 matrix metallopeptidase 28 Mmp28 303384 NM_001079888 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379178_at BF410468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410468 /DB_XREF=gi:11398443 /DB_XREF=UI-R-CA1-bjx-h-01-0-UI.s1 /CLONE=UI-R-CA1-bjx-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.61138.1 /TIER=ConsEnd /STK=3 /UG=Rn.61138 /UG_TITLE=ESTs BF410468 1379179_at BF413722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413722 /DB_XREF=gi:11401711 /DB_XREF=UI-R-CA0-boh-g-06-0-UI.s1 /CLONE=UI-R-CA0-boh-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.62437.1 /TIER=ConsEnd /STK=3 /UG=Rn.62437 /UG_TITLE=ESTs BF413722 NHS-like 2 Nhsl2 317253 XM_001070369 /// XM_228547 1379180_at BF394667 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394667 /DB_XREF=gi:11379624 /DB_XREF=UI-R-CA0-bfy-d-10-0-UI.s1 /CLONE=UI-R-CA0-bfy-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.64322.1 /TIER=ConsEnd /STK=3 /UG=Rn.64322 /UG_TITLE=ESTs BF394667 1379181_at BF405290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405290 /DB_XREF=gi:11393265 /DB_XREF=UI-R-CA1-biw-g-11-0-UI.s1 /CLONE=UI-R-CA1-biw-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.64362.1 /TIER=ConsEnd /STK=3 /UG=Rn.64362 /UG_TITLE=ESTs BF405290 1379182_at BE105382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105382 /DB_XREF=gi:8497484 /DB_XREF=UI-R-BO1-asn-b-04-0-UI.s1 /CLONE=UI-R-BO1-asn-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.9255.1 /TIER=ConsEnd /STK=3 /UG=Rn.9255 /UG_TITLE=ESTs BE105382 Transcriptional regulating factor 1 Trerf1 316219 NM_001108199 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1379183_at BG379858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379858 /DB_XREF=gi:13304330 /DB_XREF=UI-R-CS0-btk-a-08-0-UI.s1 /CLONE=UI-R-CS0-btk-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.42860.1 /TIER=ConsEnd /STK=3 /UG=Rn.42860 /UG_TITLE=ESTs, Moderately similar to T17234 hypothetical protein DKFZp434J046.1 (H.sapiens) BG379858 WD repeat domain 62 Wdr62 308492 NM_001191623 /// XM_001075797 /// XM_218479 1379184_at BI291332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291332 /DB_XREF=gi:14950772 /DB_XREF=UI-R-CV2-cgo-f-06-0-UI.s1 /CLONE=UI-R-CV2-cgo-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.66541.1 /TIER=ConsEnd /STK=3 /UG=Rn.66541 /UG_TITLE=ESTs BI291332 1379185_at AI579798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI579798 /DB_XREF=gi:4564174 /DB_XREF=UI-R-AD0-wg-a-06-0-UI.s2 /CLONE=UI-R-AD0-wg-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.40498.1 /TIER=ConsEnd /STK=3 /UG=Rn.40498 /UG_TITLE=ESTs, Weakly similar to SWISNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 (Mus musculus) (M.musculus) AI579798 Similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin c2 LOC685179 685179 XM_001055673 /// XM_001055738 /// XM_001055795 /// XM_002726856 /// XM_002729767 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006338 // chromatin remodeling // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0000785 // chromatin // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0016514 // SWI/SNF complex // not recorded /// 0017053 // transcriptional repressor complex // not recorded /// 0071564 // npBAF complex // not recorded /// 0071565 // nBAF complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379186_at BF414701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414701 /DB_XREF=gi:11402690 /DB_XREF=UI-R-BJ2-bow-a-12-0-UI.s1 /CLONE=UI-R-BJ2-bow-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.34614.1 /TIER=ConsEnd /STK=3 /UG=Rn.34614 /UG_TITLE=ESTs BF414701 translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae) Tomm70a 304017 NM_212519 0015031 // protein transport // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // traceable author statement /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379187_at BF418643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418643 /DB_XREF=gi:11406632 /DB_XREF=UI-R-BJ2-bqi-c-10-0-UI.s1 /CLONE=UI-R-BJ2-bqi-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.40941.1 /TIER=ConsEnd /STK=3 /UG=Rn.40941 /UG_TITLE=ESTs BF418643 1379188_at BI289741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289741 /DB_XREF=gi:14947632 /DB_XREF=UI-R-DK0-cfn-f-06-0-UI.s1 /CLONE=UI-R-DK0-cfn-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.52627.1 /TIER=ConsEnd /STK=3 /UG=Rn.52627 /UG_TITLE=ESTs, Weakly similar to YP83_CAEEL HYPOTHETICAL 139.1 KD PROTEIN C08B11.3 IN CHROMOSOME II (C.elegans) BI289741 AT rich interactive domain 2 (Arid-rfx like) Arid2 366980 XM_001059099 /// XM_345867 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1379189_at BF391396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391396 /DB_XREF=gi:11376249 /DB_XREF=UI-R-CA1-bcr-h-08-0-UI.s1 /CLONE=UI-R-CA1-bcr-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.62338.1 /TIER=ConsEnd /STK=3 /UG=Rn.62338 /UG_TITLE=ESTs BF391396 1379190_at BF389467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389467 /DB_XREF=gi:11374300 /DB_XREF=UI-R-CJ0-bfc-b-05-0-UI.s1 /CLONE=UI-R-CJ0-bfc-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.51887.1 /TIER=ConsEnd /STK=3 /UG=Rn.51887 /UG_TITLE=ESTs, Weakly similar to SCOT_HUMAN SUCCINYL-COA:3-KETOACID-COENZYME A TRANSFERASE PRECURSOR (H.sapiens) BF389467 3-oxoacid CoA transferase 2A Oxct2a 366463 NM_001012221 0008152 // metabolic process // inferred from electronic annotation /// 0046950 // cellular ketone body metabolic process // not recorded /// 0046952 // ketone body catabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0009434 // microtubule-based flagellum // not recorded 0008260 // 3-oxoacid CoA-transferase activity // inferred from electronic annotation /// 0008260 // 3-oxoacid CoA-transferase activity // not recorded /// 0008410 // CoA-transferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1379191_x_at BF410445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410445 /DB_XREF=gi:11398420 /DB_XREF=UI-R-CA1-bjx-e-11-0-UI.s1 /CLONE=UI-R-CA1-bjx-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.61707.1 /TIER=ConsEnd /STK=3 /UG=Rn.61707 /UG_TITLE=ESTs BF410445 1379192_at AW528096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528096 /DB_XREF=gi:7170510 /DB_XREF=UI-R-BT1-akh-g-02-0-UI.s1 /CLONE=UI-R-BT1-akh-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.7418.1 /TIER=ConsEnd /STK=3 /UG=Rn.7418 /UG_TITLE=ESTs, Highly similar to T08661 anti-silencing protein ASF1 homolog DKFZp547E2110.1 (H.sapiens) AW528096 ASF1 anti-silencing function 1 homolog A (S. cerevisiae) Asf1a 294408 NM_001106389 0006281 // DNA repair // not recorded /// 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006334 // nucleosome assembly // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016585 // chromatin remodeling complex // not recorded 0042393 // histone binding // not recorded 1379193_at BG375472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375472 /DB_XREF=gi:13299944 /DB_XREF=UI-R-CV1-btb-g-04-0-UI.s1 /CLONE=UI-R-CV1-btb-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.66315.1 /TIER=ConsEnd /STK=3 /UG=Rn.66315 /UG_TITLE=ESTs BG375472 1379194_at BF407258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407258 /DB_XREF=gi:11395233 /DB_XREF=UI-R-BJ2-bqc-e-09-0-UI.s1 /CLONE=UI-R-BJ2-bqc-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.13901.1 /TIER=ConsEnd /STK=3 /UG=Rn.13901 /UG_TITLE=ESTs BF407258 kelch domain containing 5 Klhdc5 500367 NM_001109257 0005515 // protein binding // inferred from electronic annotation 1379195_s_at AI556346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556346 /DB_XREF=gi:4488709 /DB_XREF=UI-R-C2p-rg-d-02-0-UI.s1 /CLONE=UI-R-C2p-rg-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.27361.1 /TIER=ConsEnd /STK=3 /UG=Rn.27361 /UG_TITLE=ESTs, Moderately similar to DNA LIGASE I (M.musculus) AI556346 ligase I, DNA, ATP-dependent Lig1 81513 NM_001024268 /// NM_030855 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded /// 0006281 // DNA repair // inferred from direct assay /// 0006281 // DNA repair // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006297 // nucleotide-excision repair, DNA gap filling // not recorded /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0033151 // V(D)J recombination // not recorded /// 0051103 // DNA ligation involved in DNA repair // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003909 // DNA ligase activity // inferred from direct assay /// 0003909 // DNA ligase activity // not recorded /// 0003909 // DNA ligase activity // inferred from electronic annotation /// 0003910 // DNA ligase (ATP) activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379196_at AI058763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058763 /DB_XREF=gi:3332540 /DB_XREF=UI-R-C1-kp-h-05-0-UI.s1 /CLONE=UI-R-C1-kp-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.11668.1 /TIER=ConsEnd /STK=3 /UG=Rn.11668 /UG_TITLE=ESTs AI058763 F-box and leucine-rich repeat protein 8 Fbxl8 498941 NM_001109128 0005515 // protein binding // not recorded 1379197_at BF414167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414167 /DB_XREF=gi:11402156 /DB_XREF=UI-R-BJ2-bon-b-07-0-UI.s1 /CLONE=UI-R-BJ2-bon-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.49178.1 /TIER=ConsEnd /STK=3 /UG=Rn.49178 /UG_TITLE=ESTs BF414167 Calcium channel, voltage-dependent, T type, alpha 1H subunit Cacna1h 114862 NM_153814 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0008332 // low voltage-gated calcium channel activity // inferred from direct assay 1379198_at AI712874 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712874 /DB_XREF=gi:5016674 /DB_XREF=UI-R-AG1-aaf-e-07-0-UI.s2 /CLONE=UI-R-AG1-aaf-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.41135.1 /TIER=ConsEnd /STK=3 /UG=Rn.41135 /UG_TITLE=ESTs AI712874 1379199_at BG374892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374892 /DB_XREF=gi:13299364 /DB_XREF=UI-R-CV1-bss-g-02-0-UI.s1 /CLONE=UI-R-CV1-bss-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.66261.1 /TIER=ConsEnd /STK=3 /UG=Rn.66261 /UG_TITLE=ESTs BG374892 1379200_at BE109271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109271 /DB_XREF=gi:8501376 /DB_XREF=UI-R-BS1-azd-h-04-0-UI.s1 /CLONE=UI-R-BS1-azd-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.51701.1 /TIER=ConsEnd /STK=3 /UG=Rn.51701 /UG_TITLE=ESTs, Moderately similar to T00362 hypothetical protein KIAA0675 (H.sapiens) BE109271 DAZ interacting protein 3, zinc finger Dzip3 303963 XM_001058877 /// XM_221487 0000209 // protein polyubiquitination // not recorded 0005737 // cytoplasm // not recorded 0003723 // RNA binding // not recorded /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0031593 // polyubiquitin binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1379201_at AA851653 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851653 /DB_XREF=gi:2939193 /DB_XREF=EST194421 /CLONE=RPLAL05 /FEA=EST /CNT=3 /TID=Rn.23207.1 /TIER=ConsEnd /STK=3 /UG=Rn.23207 /UG_TITLE=ESTs AA851653 DEAH (Asp-Glu-Ala-His) box polypeptide 8 Dhx8 287727 NM_001047844 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1379202_at AI501945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501945 /DB_XREF=gi:4399796 /DB_XREF=UI-R-C0-ix-c-09-0-UI.s1 /CLONE=UI-R-C0-ix-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.63698.1 /TIER=ConsEnd /STK=3 /UG=Rn.63698 /UG_TITLE=ESTs AI501945 DNA-damage inducible protein 2 Ddi2 313668 NM_001034149 0006508 // proteolysis // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation 1379203_at AI177311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177311 /DB_XREF=gi:3727949 /DB_XREF=EST220928 /CLONE=RPLBX32 /FEA=EST /CNT=3 /TID=Rn.29088.1 /TIER=ConsEnd /STK=3 /UG=Rn.29088 /UG_TITLE=ESTs, Highly similar to TDP2 MOUSE TRANSCRIPTION FACTOR DP-2 (M.musculus) AI177311 transcription factor Dp-2 (E2F dimerization partner 2) Tfdp2 300947 NM_001106847 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007507 // heart development // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation 1379204_at AI710006 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI710006 /DB_XREF=gi:4999782 /DB_XREF=UI-R-C3-tm-d-08-0-UI.s1 /CLONE=UI-R-C3-tm-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.48651.1 /TIER=ConsEnd /STK=3 /UG=Rn.48651 /UG_TITLE=ESTs AI710006 similar to ubiquitin-conjugating enzyme E2R 2 LOC691708 691708 XM_001079338 0043687 // post-translational protein modification // inferred from electronic annotation 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1379205_at BG374111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374111 /DB_XREF=gi:13298583 /DB_XREF=UI-R-CV1-bsj-e-12-0-UI.s1 /CLONE=UI-R-CV1-bsj-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.79241.1 /TIER=ConsEnd /STK=3 /UG=Rn.79241 /UG_TITLE=ESTs BG374111 1379206_at BF410357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410357 /DB_XREF=gi:11398337 /DB_XREF=UI-R-CA1-bjw-f-03-0-UI.s1 /CLONE=UI-R-CA1-bjw-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.61676.1 /TIER=ConsEnd /STK=3 /UG=Rn.61676 /UG_TITLE=ESTs, Weakly similar to Y57A10A.28.p (Caenorhabditis elegans) (C.elegans) BF410357 transmembrane protein 38a Tmem38a 306327 NM_001100175 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0015672 // monovalent inorganic cation transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0033017 // sarcoplasmic reticulum membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation 1379207_at BE098720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098720 /DB_XREF=gi:8490588 /DB_XREF=UI-R-BJ1-atd-b-06-0-UI.s1 /CLONE=UI-R-BJ1-atd-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.51730.1 /TIER=ConsEnd /STK=3 /UG=Rn.51730 /UG_TITLE=ESTs, Moderately similar to T17365 serinethreonine protein kinase TAO1 - rat (R.norvegicus) BE098720 TAO kinase 3 Taok3 304530 NM_001024254 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000165 // MAPKKK cascade // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // not recorded /// 0046330 // positive regulation of JNK cascade // inferred from electronic annotation /// 0046330 // positive regulation of JNK cascade // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016740 // transferase activity // not recorded 1379208_at BE113484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113484 /DB_XREF=gi:8505589 /DB_XREF=UI-R-BJ1-awl-h-02-0-UI.s1 /CLONE=UI-R-BJ1-awl-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.35256.1 /TIER=ConsEnd /STK=3 /UG=Rn.35256 /UG_TITLE=ESTs BE113484 1379209_at AI548735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548735 /DB_XREF=gi:4466223 /DB_XREF=UI-R-C3-tr-a-02-0-UI.s1 /CLONE=UI-R-C3-tr-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.52084.1 /TIER=ConsEnd /STK=3 /UG=Rn.52084 /UG_TITLE=ESTs, Highly similar to PKD2 MOUSE POLYCYSTIN 2 (M.musculus) AI548735 Polycystic kidney disease 2 homolog (human) Pkd2 498328 NM_001191934 /// XM_001058532 /// XM_573552 0005624 // membrane fraction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1379210_at AI500867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI500867 /DB_XREF=gi:4398718 /DB_XREF=UI-R-C2p-rr-c-07-0-UI.s1 /CLONE=UI-R-C2p-rr-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.34519.1 /TIER=ConsEnd /STK=3 /UG=Rn.34519 /UG_TITLE=ESTs AI500867 1379211_at AI071374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071374 /DB_XREF=gi:3397589 /DB_XREF=UI-R-C2-mw-b-02-0-UI.s1 /CLONE=UI-R-C2-mw-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.21923.1 /TIER=ConsEnd /STK=3 /UG=Rn.21923 /UG_TITLE=ESTs AI071374 platelet derived growth factor receptor, beta polypeptide Pdgfrb 24629 NM_031525 0001701 // in utero embryonic development // not recorded /// 0001822 // kidney development // not recorded /// 0001894 // tissue homeostasis // not recorded /// 0006024 // glycosaminoglycan biosynthetic process // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006807 // nitrogen compound metabolic process // not recorded /// 0007165 // signal transduction // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0007243 // intracellular protein kinase cascade // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0009636 // response to toxin // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0030325 // adrenal gland development // not recorded /// 0030335 // positive regulation of cell migration // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032967 // positive regulation of collagen biosynthetic process // inferred from mutant phenotype /// 0033993 // response to lipid // inferred from expression pattern /// 0034405 // response to fluid shear stress // inferred from expression pattern /// 0042060 // wound healing // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // not recorded /// 0048008 // platelet-derived growth factor receptor signaling pathway // not recorded /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // not recorded /// 0048745 // smooth muscle tissue development // not recorded /// 0048839 // inner ear development // inferred from expression pattern /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0055093 // response to hyperoxia // inferred from expression pattern /// 0060326 // cell chemotaxis // not recorded 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005017 // platelet-derived growth factor receptor activity // inferred from direct assay /// 0005017 // platelet-derived growth factor receptor activity // traceable author statement /// 0005019 // platelet-derived growth factor beta-receptor activity // not recorded /// 0005021 // vascular endothelial growth factor receptor activity // inferred from electronic annotation /// 0005161 // platelet-derived growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction /// 0048407 // platelet-derived growth factor binding // inferred from electronic annotation /// 0048407 // platelet-derived growth factor binding // not recorded 1379212_at BE103175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103175 /DB_XREF=gi:8495314 /DB_XREF=UI-R-BT1-aqx-h-11-0-UI.s1 /CLONE=UI-R-BT1-aqx-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.53849.1 /TIER=ConsEnd /STK=3 /UG=Rn.53849 /UG_TITLE=ESTs, Weakly similar to VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV2.2 (R.norvegicus) BE103175 1379213_at BF400921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400921 /DB_XREF=gi:11388896 /DB_XREF=UI-R-CA0-bgg-e-02-0-UI.s1 /CLONE=UI-R-CA0-bgg-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.61645.1 /TIER=ConsEnd /STK=3 /UG=Rn.61645 /UG_TITLE=ESTs BF400921 1379214_at AW523029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523029 /DB_XREF=gi:7165414 /DB_XREF=UI-R-BO0-ahm-e-03-0-UI.s1 /CLONE=UI-R-BO0-ahm-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.45543.1 /TIER=ConsEnd /STK=3 /UG=Rn.45543 /UG_TITLE=ESTs AW523029 1379215_at AI548926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548926 /DB_XREF=gi:4466414 /DB_XREF=UI-R-C3-tp-h-11-0-UI.s1 /CLONE=UI-R-C3-tp-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.44793.1 /TIER=ConsEnd /STK=3 /UG=Rn.44793 /UG_TITLE=ESTs AI548926 YTH domain family, member 1 Ythdf1 296467 NM_001024756 1379216_at BF394647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394647 /DB_XREF=gi:11379595 /DB_XREF=UI-R-CA0-bfy-c-01-0-UI.s1 /CLONE=UI-R-CA0-bfy-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.58318.1 /TIER=ConsEnd /STK=3 /UG=Rn.58318 /UG_TITLE=ESTs BF394647 1379217_at AW141971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141971 /DB_XREF=gi:6161830 /DB_XREF=EST292086 /CLONE=RGICQ72 /FEA=EST /CNT=3 /TID=Rn.25532.1 /TIER=ConsEnd /STK=3 /UG=Rn.25532 /UG_TITLE=ESTs AW141971 activin A receptor, type I Acvr1 79558 NM_024486 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001655 // urogenital system development // inferred from mutant phenotype /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // not recorded /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0001707 // mesoderm formation // not recorded /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0002526 // acute inflammatory response // inferred from electronic annotation /// 0002526 // acute inflammatory response // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // traceable author statement /// 0007165 // signal transduction // not recorded /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007281 // germ cell development // inferred from electronic annotation /// 0007281 // germ cell development // not recorded /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // not recorded /// 0007369 // gastrulation // not recorded /// 0007369 // gastrulation // inferred from electronic annotation /// 0007498 // mesoderm development // inferred from electronic annotation /// 0007498 // mesoderm development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0009968 // negative regulation of signal transduction // not recorded /// 0016310 // phosphorylation // not recorded /// 0030278 // regulation of ossification // inferred from electronic annotation /// 0030278 // regulation of ossification // not recorded /// 0030501 // positive regulation of bone mineralization // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // not recorded /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030509 // BMP signaling pathway // not recorded /// 0032926 // negative regulation of activin receptor signaling pathway // inferred from electronic annotation /// 0032926 // negative regulation of activin receptor signaling pathway // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0048641 // regulation of skeletal muscle tissue development // inferred from expression pattern /// 0051145 // smooth muscle cell differentiation // inferred from electronic annotation /// 0051145 // smooth muscle cell differentiation // not recorded /// 0060037 // pharyngeal system development // inferred from electronic annotation /// 0060037 // pharyngeal system development // not recorded /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded /// 0048179 // activin receptor complex // inferred from direct assay /// 0048179 // activin receptor complex // inferred from mutant phenotype /// 0048179 // activin receptor complex // not recorded /// 0048179 // activin receptor complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // traceable author statement /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // inferred from electronic annotation /// 0004702 // receptor signaling protein serine/threonine kinase activity // inferred from mutant phenotype /// 0004702 // receptor signaling protein serine/threonine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta receptor activity // inferred from electronic annotation /// 0005025 // transforming growth factor beta receptor activity, type I // not recorded /// 0005025 // transforming growth factor beta receptor activity, type I // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016361 // activin receptor activity, type I // inferred from direct assay /// 0016361 // activin receptor activity, type I // inferred from mutant phenotype /// 0016361 // activin receptor activity, type I // not recorded /// 0016361 // activin receptor activity, type I // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded /// 0019838 // growth factor binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046332 // SMAD binding // inferred from mutant phenotype /// 0046332 // SMAD binding // not recorded /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048185 // activin binding // inferred from electronic annotation /// 0048185 // activin binding // not recorded /// 0050431 // transforming growth factor beta binding // inferred from electronic annotation /// 0050431 // transforming growth factor beta binding // not recorded 1379218_at BE101792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101792 /DB_XREF=gi:8493890 /DB_XREF=UI-R-BT1-aqh-d-10-0-UI.s1 /CLONE=UI-R-BT1-aqh-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.37331.1 /TIER=ConsEnd /STK=3 /UG=Rn.37331 /UG_TITLE=ESTs BE101792 nemo like kinase Nlk 497961 NM_001191924 /// XM_001080888 /// XM_573152 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007243 // intracellular protein kinase cascade // not recorded /// 0018107 // peptidyl-threonine phosphorylation // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0033136 // serine phosphorylation of STAT3 protein // not recorded /// 0045449 // regulation of transcription // not recorded /// 0046777 // protein autophosphorylation // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004707 // MAP kinase activity // inferred from electronic annotation /// 0004707 // MAP kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0042169 // SH2 domain binding // not recorded 1379219_at AI045877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045877 /DB_XREF=gi:3292696 /DB_XREF=UI-R-C0-jq-a-06-0-UI.s2 /CLONE=UI-R-C0-jq-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.22542.1 /TIER=ConsEnd /STK=3 /UG=Rn.22542 /UG_TITLE=ESTs AI045877 similar to 9630044O09Rik protein RGD1308626 361087 NM_001014139 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1379220_at AI764398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764398 /DB_XREF=gi:5210333 /DB_XREF=UI-R-Y0-abj-d-10-0-UI.s1 /CLONE=UI-R-Y0-abj-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.29878.1 /TIER=ConsEnd /STK=3 /UG=Rn.29878 /UG_TITLE=ESTs AI764398 1379221_at AI716277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716277 /DB_XREF=gi:5033530 /DB_XREF=UI-R-Y0-aby-a-06-0-UI.s1 /CLONE=UI-R-Y0-aby-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.44954.1 /TIER=ConsEnd /STK=3 /UG=Rn.44954 /UG_TITLE=ESTs, Weakly similar to I78376 ryanodine receptor - mouse (M.musculus) AI716277 ring finger and SPRY domain containing 1 Rspry1 689249 NM_001100945 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379222_at BE120167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120167 /DB_XREF=gi:8512272 /DB_XREF=UI-R-CA0-bap-d-02-0-UI.s1 /CLONE=UI-R-CA0-bap-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.53505.1 /TIER=ConsEnd /STK=3 /UG=Rn.53505 /UG_TITLE=ESTs, Moderately similar to A49265 flt3flk-2 ligand precursor - mouse (M.musculus) BE120167 1379223_x_at AW524037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524037 /DB_XREF=gi:7166387 /DB_XREF=UI-R-BJ0p-aik-d-09-0-UI.s1 /CLONE=UI-R-BJ0p-aik-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.43762.1 /TIER=ConsEnd /STK=3 /UG=Rn.43762 /UG_TITLE=ESTs AW524037 1379224_at AA925587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925587 /DB_XREF=gi:4236778 /DB_XREF=UI-R-A1-er-g-10-0-UI.s1 /CLONE=UI-R-A1-er-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.48869.1 /TIER=ConsEnd /STK=3 /UG=Rn.48869 /UG_TITLE=ESTs, Moderately similar to T09013 RING finger protein Fxy - mouse (M.musculus) AA925587 Midline 2 Mid2 363502 NM_001191889 /// XM_001053301 /// XM_343825 0005622 // intracellular // inferred from electronic annotation /// 0005874 // microtubule // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379225_at AI071617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071617 /DB_XREF=gi:3397832 /DB_XREF=UI-R-C2-mw-c-08-0-UI.s1 /CLONE=UI-R-C2-mw-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.23845.1 /TIER=ConsEnd /STK=3 /UG=Rn.23845 /UG_TITLE=ESTs AI071617 1379226_at BM386775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386775 /DB_XREF=gi:18186828 /DB_XREF=UI-R-CN1-cjg-p-14-0-UI.s1 /CLONE=UI-R-CN1-cjg-p-14-0-UI /FEA=EST /CNT=3 /TID=Rn.67099.1 /TIER=ConsEnd /STK=3 /UG=Rn.67099 /UG_TITLE=ESTs BM386775 absent in melanoma 1-like Aim1l 298543 XM_001066449 /// XM_216539 1379227_at BF392832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392832 /DB_XREF=gi:11377691 /DB_XREF=UI-R-CA0-bfo-g-08-0-UI.s1 /CLONE=UI-R-CA0-bfo-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.61282.1 /TIER=ConsEnd /STK=3 /UG=Rn.61282 /UG_TITLE=ESTs BF392832 1379228_at BF418531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418531 /DB_XREF=gi:11406520 /DB_XREF=UI-R-BJ2-bqh-a-05-0-UI.s1 /CLONE=UI-R-BJ2-bqh-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.44200.1 /TIER=ConsEnd /STK=3 /UG=Rn.44200 /UG_TITLE=ESTs, Highly similar to SL CYTOKINE PRECURSOR (M.musculus) BF418531 1379229_at AI501127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501127 /DB_XREF=gi:4398978 /DB_XREF=UI-R-C2p-rs-b-11-0-UI.s1 /CLONE=UI-R-C2p-rs-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.37294.1 /TIER=ConsEnd /STK=3 /UG=Rn.37294 /UG_TITLE=ESTs AI501127 1379230_at AI556662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556662 /DB_XREF=gi:4489025 /DB_XREF=UI-R-C2p-rj-a-04-0-UI.s1 /CLONE=UI-R-C2p-rj-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.43891.1 /TIER=ConsEnd /STK=3 /UG=Rn.43891 /UG_TITLE=ESTs, Weakly similar to I41143 shikimate kinase I - Escherichia coli (E.coli) AI556662 1379231_at BF418950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418950 /DB_XREF=gi:11406939 /DB_XREF=UI-R-BJ2-bqk-g-09-0-UI.s1 /CLONE=UI-R-BJ2-bqk-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.63940.1 /TIER=ConsEnd /STK=3 /UG=Rn.63940 /UG_TITLE=ESTs, Moderately similar to JE0271 beta spectrin, beta SpIII sigma1 - rat (R.norvegicus) BF418950 Spectrin, beta, erythrocytic Sptb 314251 NM_212522 0006779 // porphyrin biosynthetic process // inferred from electronic annotation /// 0006779 // porphyrin biosynthetic process // not recorded 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0008091 // spectrin // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0014731 // spectrin-associated cytoskeleton // not recorded /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // not recorded /// 0043234 // protein complex // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051015 // actin filament binding // not recorded 1379232_at AA955771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955771 /DB_XREF=gi:4238166 /DB_XREF=UI-R-E1-fg-h-11-0-UI.s1 /CLONE=UI-R-E1-fg-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.23113.1 /TIER=ConsEnd /STK=3 /UG=Rn.23113 /UG_TITLE=ESTs, Highly similar to T08683 hypothetical protein DKFZp564J2123.1 (H.sapiens) AA955771 hypothetical protein LOC687839 LOC687839 687839 XM_002725719 1379233_at BF394087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394087 /DB_XREF=gi:11378956 /DB_XREF=UI-R-CA0-bgz-b-03-0-UI.s1 /CLONE=UI-R-CA0-bgz-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.53273.1 /TIER=ConsEnd /STK=3 /UG=Rn.53273 /UG_TITLE=ESTs BF394087 1379234_a_at AI179539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179539 /DB_XREF=gi:3730177 /DB_XREF=EST223259 /CLONE=RSPCI69 /FEA=EST /CNT=3 /TID=Rn.37763.1 /TIER=ConsEnd /STK=3 /UG=Rn.37763 /UG_TITLE=ESTs, Highly similar to CC45_MOUSE CDC45-RELATED PROTEIN (PORC-PI-1) (M.musculus) AI179539 CDC45 cell division cycle 45-like (S. cerevisiae) Cdc45l 287961 NM_001105866 0006260 // DNA replication // not recorded /// 0006270 // DNA-dependent DNA replication initiation // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // not recorded 0005515 // protein binding // not recorded 1379235_x_at AI179539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179539 /DB_XREF=gi:3730177 /DB_XREF=EST223259 /CLONE=RSPCI69 /FEA=EST /CNT=3 /TID=Rn.37763.1 /TIER=ConsEnd /STK=3 /UG=Rn.37763 /UG_TITLE=ESTs, Highly similar to CC45_MOUSE CDC45-RELATED PROTEIN (PORC-PI-1) (M.musculus) AI179539 CDC45 cell division cycle 45-like (S. cerevisiae) Cdc45l 287961 NM_001105866 0006260 // DNA replication // not recorded /// 0006270 // DNA-dependent DNA replication initiation // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // not recorded 0005515 // protein binding // not recorded 1379236_at BF405781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405781 /DB_XREF=gi:11393751 /DB_XREF=UI-R-CA1-bje-k-23-0-UI.s1 /CLONE=UI-R-CA1-bje-k-23-0-UI /FEA=EST /CNT=3 /TID=Rn.60839.1 /TIER=ConsEnd /STK=3 /UG=Rn.60839 /UG_TITLE=ESTs BF405781 1379237_at AA997638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997638 /DB_XREF=gi:4280920 /DB_XREF=UI-R-C0-hm-a-03-0-UI.s1 /CLONE=UI-R-C0-hm-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.38974.1 /TIER=ConsEnd /STK=3 /UG=Rn.38974 /UG_TITLE=ESTs AA997638 Tax1 (human T-cell leukemia virus type I) binding protein 3 Tax1bp3 360564 NM_001025419 0007266 // Rho protein signal transduction // inferred from sequence or structural similarity /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1379238_at BE112261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112261 /DB_XREF=gi:8504366 /DB_XREF=UI-R-BJ1-avl-f-01-0-UI.s1 /CLONE=UI-R-BJ1-avl-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.52064.1 /TIER=ConsEnd /STK=3 /UG=Rn.52064 /UG_TITLE=ESTs, Moderately similar to JC5707 HYA22 protein (H.sapiens) BE112261 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like Ctdspl 301056 NM_001106865 0016791 // phosphatase activity // inferred from electronic annotation 1379239_at AI705987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI705987 /DB_XREF=gi:4993887 /DB_XREF=UI-R-AC0-yl-e-06-0-UI.s1 /CLONE=UI-R-AC0-yl-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.23268.1 /TIER=ConsEnd /STK=3 /UG=Rn.23268 /UG_TITLE=ESTs AI705987 Ubiquitin interaction motif containing 1 Uimc1 290997 NM_001013884 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // not recorded /// 0006302 // double-strand break repair // inferred from sequence or structural similarity /// 0006350 // transcription // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010212 // response to ionizing radiation // not recorded /// 0010212 // response to ionizing radiation // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0031572 // G2/M transition DNA damage checkpoint // not recorded /// 0031572 // G2/M transition DNA damage checkpoint // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045739 // positive regulation of DNA repair // not recorded /// 0045739 // positive regulation of DNA repair // inferred from sequence or structural similarity /// 0070537 // histone H2A K63-linked deubiquitination // not recorded /// 0070537 // histone H2A K63-linked deubiquitination // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0070531 // BRCA1-A complex // not recorded /// 0070531 // BRCA1-A complex // inferred from sequence or structural similarity 0005515 // protein binding // not recorded /// 0042393 // histone binding // not recorded /// 0042393 // histone binding // inferred from sequence or structural similarity /// 0046965 // retinoid X receptor binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // not recorded /// 0070530 // K63-linked polyubiquitin binding // not recorded /// 0070530 // K63-linked polyubiquitin binding // inferred from sequence or structural similarity 1379240_at AA893453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893453 /DB_XREF=gi:3020332 /DB_XREF=EST197256 /CLONE=RLIAB63 /FEA=EST /CNT=32 /TID=Rn.23011.1 /TIER=ConsEnd /STK=2 /UG=Rn.23011 /UG_TITLE=ESTs AA893453 1379242_at BI275646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275646 /DB_XREF=gi:14919762 /DB_XREF=UI-R-CW0-bwm-a-05-0-UI.s1 /CLONE=UI-R-CW0-bwm-a-05-0-UI /FEA=EST /CNT=24 /TID=Rn.30.1 /TIER=ConsEnd /STK=2 /UG=Rn.30 /UG_TITLE=ESTs BI275646 similar to chromosome 7 open reading frame 11 LOC684996 684996 NM_001109452 1379243_at AA819547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819547 /DB_XREF=gi:4228683 /DB_XREF=UI-R-A0-bf-g-10-0-UI.s1 /CLONE=UI-R-A0-bf-g-10-0-UI /FEA=EST /CNT=16 /TID=Rn.4013.1 /TIER=ConsEnd /STK=2 /UG=Rn.4013 /UG_TITLE=ESTs, Moderately similar to JC5821 NADH dehydrogenase (H.sapiens) AA819547 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14) Ndufa6 315167 NM_001130505 0006810 // transport // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0022900 // electron transport chain // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // not recorded /// 0070469 // respiratory chain // inferred from electronic annotation 1379244_at AW522926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522926 /DB_XREF=gi:7165311 /DB_XREF=UI-R-BO0-ahp-c-11-0-UI.s1 /CLONE=UI-R-BO0-ahp-c-11-0-UI /FEA=EST /CNT=15 /TID=Rn.13581.1 /TIER=ConsEnd /STK=2 /UG=Rn.13581 /UG_TITLE=ESTs AW522926 1379245_at BI283491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283491 /DB_XREF=gi:14935287 /DB_XREF=UI-R-DE0-cab-h-11-0-UI.s1 /CLONE=UI-R-DE0-cab-h-11-0-UI /FEA=EST /CNT=16 /TID=Rn.4272.2 /TIER=ConsEnd /STK=2 /UG=Rn.4272 /UG_TITLE=ESTs, Highly similar to 14P_HUMAN PROTEIN 1-4 (H.sapiens) BI283491 thioredoxin domain containing 9 Txndc9 280671 NM_172032 0045454 // cell redox homeostasis // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379246_at AI169938 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169938 /DB_XREF=gi:3709978 /DB_XREF=EST215848 /CLONE=RLIAX35 /FEA=EST /CNT=13 /TID=Rn.23009.1 /TIER=ConsEnd /STK=2 /UG=Rn.23009 /UG_TITLE=ESTs, Weakly similar to COMPLEMENT C5 PRECURSOR (M.musculus) AI169938 similar to Complement C5 precursor RGD1308742 362120 XM_001080252 /// XM_342422 0006954 // inflammatory response // inferred from electronic annotation /// 0006956 // complement activation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0004866 // endopeptidase inhibitor activity // inferred from electronic annotation 1379247_at BI275237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275237 /DB_XREF=gi:14886884 /DB_XREF=UI-R-CX0-bwr-b-10-0-UI.s1 /CLONE=UI-R-CX0-bwr-b-10-0-UI /FEA=EST /CNT=13 /TID=Rn.3204.1 /TIER=ConsEnd /STK=2 /UG=Rn.3204 /UG_TITLE=ESTs BI275237 YLP motif containing 1 Ylpm1 299199 XM_001057111 /// XM_234416 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 1379248_at AA926318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926318 /DB_XREF=gi:4237509 /DB_XREF=UI-R-A1-el-g-07-0-UI.s1 /CLONE=UI-R-A1-el-g-07-0-UI /FEA=EST /CNT=12 /TID=Rn.8457.1 /TIER=ConsEnd /STK=2 /UG=Rn.8457 /UG_TITLE=ESTs AA926318 prolylcarboxypeptidase (angiotensinase C) Prcp 293118 NM_001106281 0006508 // proteolysis // inferred from electronic annotation 0008236 // serine-type peptidase activity // inferred from electronic annotation 1379249_at AA900400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900400 /DB_XREF=gi:4232892 /DB_XREF=UI-R-E0-cm-h-10-0-UI.s2 /CLONE=UI-R-E0-cm-h-10-0-UI /FEA=EST /CNT=12 /TID=Rn.6971.1 /TIER=ConsEnd /STK=2 /UG=Rn.6971 /UG_TITLE=ESTs AA900400 Wilms tumor 1 associated protein Wtap 499020 NM_001113542 /// NM_001113543 /// NM_001113544 1379250_at AI012955 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012955 /DB_XREF=gi:3226787 /DB_XREF=EST207406 /CLONE=RSPBA31 /FEA=EST /CNT=14 /TID=Rn.44174.1 /TIER=ConsEnd /STK=2 /UG=Rn.44174 /UG_TITLE=ESTs AI012955 galactose mutarotase (aldose 1-epimerase) Galm 313843 NM_001007704 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0019318 // hexose metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004034 // aldose 1-epimerase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation 1379251_at BF398485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398485 /DB_XREF=gi:11383476 /DB_XREF=UI-R-BS2-bep-d-05-0-UI.s1 /CLONE=UI-R-BS2-bep-d-05-0-UI /FEA=EST /CNT=11 /TID=Rn.24762.1 /TIER=ConsEnd /STK=2 /UG=Rn.24762 /UG_TITLE=ESTs BF398485 1379252_at AW522833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522833 /DB_XREF=gi:7165218 /DB_XREF=UI-R-BO0-ahn-c-08-0-UI.s1 /CLONE=UI-R-BO0-ahn-c-08-0-UI /FEA=EST /CNT=19 /TID=Rn.22417.1 /TIER=ConsEnd /STK=2 /UG=Rn.22417 /UG_TITLE=ESTs AW522833 1379253_at BI275403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275403 /DB_XREF=gi:14887225 /DB_XREF=UI-R-CX0-bww-b-02-0-UI.s1 /CLONE=UI-R-CX0-bww-b-02-0-UI /FEA=EST /CNT=18 /TID=Rn.22141.1 /TIER=ConsEnd /STK=2 /UG=Rn.22141 /UG_TITLE=ESTs, Highly similar to S29319 transcription factor IIE-alpha (H.sapiens) BI275403 general transcription factor IIE, polypeptide 1, alpha Gtf2e1 303918 NM_001100556 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005654 // nucleoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1379254_at AA945882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945882 /DB_XREF=gi:4132633 /DB_XREF=EST201381 /CLONE=RLUAW42 /FEA=EST /CNT=10 /TID=Rn.22175.1 /TIER=ConsEnd /STK=2 /UG=Rn.22175 /UG_TITLE=ESTs AA945882 transmembrane protein 183A Tmem183a 289034 NM_001013871 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1379255_at AI012226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012226 /DB_XREF=gi:4133604 /DB_XREF=EST206677 /CLONE=RPLAU20 /FEA=EST /CNT=10 /TID=Rn.12944.1 /TIER=ConsEnd /STK=2 /UG=Rn.12944 /UG_TITLE=ESTs AI012226 ATPase, H+ transporting, lysosomal accessory protein 2 Atp6ap2 302526 XM_001060853 /// XM_217592 0002003 // angiotensin maturation // inferred from electronic annotation /// 0002003 // angiotensin maturation // not recorded /// 0032914 // positive regulation of transforming growth factor-beta1 production // inferred from electronic annotation /// 0032914 // positive regulation of transforming growth factor-beta1 production // not recorded /// 0043408 // regulation of MAPKKK cascade // inferred from electronic annotation /// 0043408 // regulation of MAPKKK cascade // not recorded 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379256_at BF397911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397911 /DB_XREF=gi:11382896 /DB_XREF=UI-R-BS2-bef-b-02-0-UI.s1 /CLONE=UI-R-BS2-bef-b-02-0-UI /FEA=EST /CNT=10 /TID=Rn.12981.1 /TIER=ConsEnd /STK=2 /UG=Rn.12981 /UG_TITLE=ESTs BF397911 similar to RIKEN cDNA 1810030O07 RGD1565685 317344 NM_001126286 1379257_at BE100811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100811 /DB_XREF=gi:8492710 /DB_XREF=UI-R-BJ1-auf-f-03-0-UI.s1 /CLONE=UI-R-BJ1-auf-f-03-0-UI /FEA=EST /CNT=10 /TID=Rn.12080.1 /TIER=ConsEnd /STK=2 /UG=Rn.12080 /UG_TITLE=ESTs BE100811 erythrocyte protein band 4.1-like 4a Epb4.1l4a 307514 NM_001107397 0005856 // cytoskeleton // inferred from electronic annotation 1379258_at AA998367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998367 /DB_XREF=gi:4289364 /DB_XREF=UI-R-C0-hz-d-04-0-UI.s1 /CLONE=UI-R-C0-hz-d-04-0-UI /FEA=EST /CNT=12 /TID=Rn.13334.1 /TIER=ConsEnd /STK=2 /UG=Rn.13334 /UG_TITLE=ESTs AA998367 kelch-like 5 (Drosophila) Klhl5 305351 NM_001047093 0005515 // protein binding // inferred from electronic annotation 1379259_at AW534671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534671 /DB_XREF=gi:7177085 /DB_XREF=UI-R-BS0-ant-d-11-0-UI.s1 /CLONE=UI-R-BS0-ant-d-11-0-UI /FEA=EST /CNT=11 /TID=Rn.22140.1 /TIER=ConsEnd /STK=2 /UG=Rn.22140 /UG_TITLE=ESTs AW534671 1379260_at BE115626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115626 /DB_XREF=gi:8507731 /DB_XREF=UI-R-BJ1-avy-a-12-0-UI.s1 /CLONE=UI-R-BJ1-avy-a-12-0-UI /FEA=EST /CNT=10 /TID=Rn.8167.1 /TIER=ConsEnd /STK=2 /UG=Rn.8167 /UG_TITLE=ESTs BE115626 headcase homolog (Drosophila) Heca 308624 NM_001107514 1379261_at BE111490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111490 /DB_XREF=gi:8503595 /DB_XREF=UI-R-BJ1-avb-d-10-0-UI.s1 /CLONE=UI-R-BJ1-avb-d-10-0-UI /FEA=EST /CNT=10 /TID=Rn.12413.2 /TIER=ConsEnd /STK=2 /UG=Rn.12413 /UG_TITLE=ESTs BE111490 spindle and kinetochore associated complex subunit 2 Ska2 287598 NM_001009624 0000090 // mitotic anaphase // not recorded /// 0000090 // mitotic anaphase // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // not recorded /// 0007059 // chromosome segregation // inferred from sequence or structural similarity /// 0007067 // mitosis // not recorded /// 0007067 // mitosis // inferred from sequence or structural similarity /// 0007067 // mitosis // inferred from electronic annotation /// 0031110 // regulation of microtubule polymerization or depolymerization // not recorded /// 0031110 // regulation of microtubule polymerization or depolymerization // inferred from sequence or structural similarity /// 0051301 // cell division // not recorded /// 0051301 // cell division // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0000940 // condensed chromosome outer kinetochore // not recorded /// 0000940 // condensed chromosome outer kinetochore // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded /// 0005876 // spindle microtubule // inferred from sequence or structural similarity 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // not recorded /// 0008017 // microtubule binding // inferred from sequence or structural similarity 1379262_at AW525769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525769 /DB_XREF=gi:7168154 /DB_XREF=UI-R-BJ0p-air-f-03-0-UI.s1 /CLONE=UI-R-BJ0p-air-f-03-0-UI /FEA=EST /CNT=10 /TID=Rn.8792.1 /TIER=ConsEnd /STK=2 /UG=Rn.8792 /UG_TITLE=ESTs, Highly similar to AC48_MOUSE 48 KDA ACYL-COA THIOESTER HYDROLASE, MITOCHONDRIAL PRECURSOR (P48) (MT-ACT48) (PROTEIN U8) (M.musculus) AW525769 acyl-CoA thioesterase 9 Acot9 302640 NM_001013960 0006637 // acyl-CoA metabolic process // not recorded 0005739 // mitochondrion // not recorded 0003986 // acetyl-CoA hydrolase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016291 // acyl-CoA thioesterase activity // not recorded 1379263_at AW251362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251362 /DB_XREF=gi:6594953 /DB_XREF=UI-R-BJ0-adh-c-04-0-UI.s1 /CLONE=UI-R-BJ0-adh-c-04-0-UI /FEA=EST /CNT=10 /TID=Rn.7371.1 /TIER=ConsEnd /STK=2 /UG=Rn.7371 /UG_TITLE=ESTs AW251362 fukutin related protein Fkrp 308390 NM_001025678 0009101 // glycoprotein biosynthetic process // inferred from electronic annotation /// 0009101 // glycoprotein biosynthetic process // not recorded /// 0016485 // protein processing // inferred from electronic annotation /// 0016485 // protein processing // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016010 // dystrophin-associated glycoprotein complex // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation 1379264_at BE109004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109004 /DB_XREF=gi:8501109 /DB_XREF=UI-R-BS1-aza-h-06-0-UI.s1 /CLONE=UI-R-BS1-aza-h-06-0-UI /FEA=EST /CNT=9 /TID=Rn.22324.1 /TIER=ConsEnd /STK=2 /UG=Rn.22324 /UG_TITLE=ESTs BE109004 zinc and ring finger 2 Znrf2 362367 NM_001108628 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379265_at BF398764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398764 /DB_XREF=gi:11383728 /DB_XREF=UI-R-BS2-bes-b-11-0-UI.s1 /CLONE=UI-R-BS2-bes-b-11-0-UI /FEA=EST /CNT=9 /TID=Rn.7380.1 /TIER=ConsEnd /STK=2 /UG=Rn.7380 /UG_TITLE=ESTs BF398764 1379266_at AI235399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235399 /DB_XREF=gi:3828905 /DB_XREF=EST231961 /CLONE=ROVCR36 /FEA=EST /CNT=9 /TID=Rn.17705.1 /TIER=ConsEnd /STK=2 /UG=Rn.17705 /UG_TITLE=ESTs AI235399 1379267_a_at AA924312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924312 /DB_XREF=gi:4234452 /DB_XREF=UI-R-A1-dy-g-07-0-UI.s1 /CLONE=UI-R-A1-dy-g-07-0-UI /FEA=EST /CNT=9 /TID=Rn.8316.1 /TIER=ConsEnd /STK=2 /UG=Rn.8316 /UG_TITLE=ESTs AA924312 cysteine and histidine rich 1 LOC100362155 100362155 XM_002726920 /// XM_002729828 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379268_at AA924312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924312 /DB_XREF=gi:4234452 /DB_XREF=UI-R-A1-dy-g-07-0-UI.s1 /CLONE=UI-R-A1-dy-g-07-0-UI /FEA=EST /CNT=9 /TID=Rn.8316.1 /TIER=ConsEnd /STK=2 /UG=Rn.8316 /UG_TITLE=ESTs AA924312 cysteine and histidine rich 1 LOC100362155 100362155 XM_002726920 /// XM_002729828 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379269_at BM385296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385296 /DB_XREF=gi:18185349 /DB_XREF=UI-R-EB1-clf-n-16-0-UI.s1 /CLONE=UI-R-EB1-clf-n-16-0-UI /FEA=EST /CNT=9 /TID=Rn.3986.1 /TIER=ConsEnd /STK=2 /UG=Rn.3986 /UG_TITLE=ESTs BM385296 1379270_at AI717163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717163 /DB_XREF=gi:5034419 /DB_XREF=UI-R-Y0-abe-h-04-0-UI.s1 /CLONE=UI-R-Y0-abe-h-04-0-UI /FEA=EST /CNT=9 /TID=Rn.29820.1 /TIER=ConsEnd /STK=2 /UG=Rn.29820 /UG_TITLE=ESTs AI717163 1379271_at AA925076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925076 /DB_XREF=gi:4236267 /DB_XREF=UI-R-A1-en-g-12-0-UI.s1 /CLONE=UI-R-A1-en-g-12-0-UI /FEA=EST /CNT=9 /TID=Rn.35816.1 /TIER=ConsEnd /STK=2 /UG=Rn.35816 /UG_TITLE=ESTs AA925076 suppressor of cytokine signaling 5 Socs5 500616 NM_001109274 0007173 // epidermal growth factor receptor signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0045627 // positive regulation of T-helper 1 cell differentiation // not recorded /// 0045629 // negative regulation of T-helper 2 cell differentiation // not recorded 0005154 // epidermal growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379272_at AA963084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963084 /DB_XREF=gi:4278054 /DB_XREF=UI-R-E1-fx-b-06-0-UI.s1 /CLONE=UI-R-E1-fx-b-06-0-UI /FEA=EST /CNT=9 /TID=Rn.9450.1 /TIER=ConsEnd /STK=2 /UG=Rn.9450 /UG_TITLE=ESTs AA963084 1379273_at BE109836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109836 /DB_XREF=gi:8501941 /DB_XREF=UI-R-BJ1-aul-h-10-0-UI.s1 /CLONE=UI-R-BJ1-aul-h-10-0-UI /FEA=EST /CNT=9 /TID=Rn.7427.1 /TIER=ConsEnd /STK=2 /UG=Rn.7427 /UG_TITLE=ESTs BE109836 vacuolar protein sorting 26 homolog B (S. pombe) Vps26b 300472 NM_001106809 0007034 // vacuolar transport // inferred from electronic annotation 0030904 // retromer complex // inferred from electronic annotation 1379274_at AW535515 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535515 /DB_XREF=gi:7177929 /DB_XREF=UI-R-C4-alx-b-08-0-UI.s1 /CLONE=UI-R-C4-alx-b-08-0-UI /FEA=EST /CNT=9 /TID=Rn.24130.1 /TIER=ConsEnd /STK=2 /UG=Rn.24130 /UG_TITLE=ESTs AW535515 1379275_at AI007889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI007889 /DB_XREF=gi:3221721 /DB_XREF=EST202340 /CLONE=RBRAX41 /FEA=EST /CNT=11 /TID=Rn.23343.1 /TIER=ConsEnd /STK=2 /UG=Rn.23343 /UG_TITLE=ESTs, Weakly similar to SNXC_MOUSE SORTING NEXIN 12 (SDP8 PROTEIN) (M.musculus) AI007889 sorting nexin 10 Snx10 297096 NM_001013085 0007154 // cell communication // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1379276_at AW919982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919982 /DB_XREF=gi:8085787 /DB_XREF=EST351286 /CLONE=RGIGP30 /FEA=EST /CNT=11 /TID=Rn.23017.1 /TIER=ConsEnd /STK=2 /UG=Rn.23017 /UG_TITLE=ESTs AW919982 1379277_at AI575341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575341 /DB_XREF=gi:4559717 /DB_XREF=UI-R-Y0-vh-e-08-0-UI.s1 /CLONE=UI-R-Y0-vh-e-08-0-UI /FEA=EST /CNT=10 /TID=Rn.22894.1 /TIER=ConsEnd /STK=2 /UG=Rn.22894 /UG_TITLE=ESTs AI575341 1379278_at BE103919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103919 /DB_XREF=gi:8496019 /DB_XREF=UI-R-BX0-arj-d-09-0-UI.s1 /CLONE=UI-R-BX0-arj-d-09-0-UI /FEA=EST /CNT=10 /TID=Rn.16509.1 /TIER=ConsEnd /STK=2 /UG=Rn.16509 /UG_TITLE=ESTs, Highly similar to unknown protein CIT987SK 2A8 1 (H.sapiens) BE103919 integrator complex subunit 9 Ints9 290322 XM_001066109 /// XM_214216 0016180 // snRNA processing // not recorded 0032039 // integrator complex // not recorded 0005515 // protein binding // not recorded 1379279_at AI234719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234719 /DB_XREF=gi:3828225 /DB_XREF=EST231281 /CLONE=ROVCG74 /FEA=EST /CNT=10 /TID=Rn.14783.1 /TIER=ConsEnd /STK=2 /UG=Rn.14783 /UG_TITLE=ESTs AI234719 stromal interaction molecule 2 Stim2 117087 NM_001105750 0006874 // cellular calcium ion homeostasis // not recorded /// 0032235 // negative regulation of calcium ion transport via store-operated calcium channel activity // not recorded /// 0032237 // activation of store-operated calcium channel activity // not recorded /// 0051928 // positive regulation of calcium ion transport // not recorded 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // not recorded 0005246 // calcium channel regulator activity // not recorded /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // not recorded 1379280_at BF523849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523849 /DB_XREF=gi:11631816 /DB_XREF=UI-R-Y0-acg-g-10-0-UI.r1 /CLONE=UI-R-Y0-acg-g-10-0-UI /FEA=EST /CNT=9 /TID=Rn.24155.1 /TIER=ConsEnd /STK=2 /UG=Rn.24155 /UG_TITLE=ESTs BF523849 1379281_at AA892798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892798 /DB_XREF=gi:3019677 /DB_XREF=EST196601 /CLONE=RKIAX41 /FEA=EST /CNT=9 /TID=Rn.2415.1 /TIER=ConsEnd /STK=2 /UG=Rn.2415 /UG_TITLE=ESTs AA892798 sclerostin domain containing 1 Sostdc1 266803 NM_153737 0007389 // pattern specification process // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007566 // embryo implantation // non-traceable author statement /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379282_at AI145899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145899 /DB_XREF=gi:3667698 /DB_XREF=UI-R-BT0-qg-f-02-0-UI.s1 /CLONE=UI-R-BT0-qg-f-02-0-UI /FEA=EST /CNT=9 /TID=Rn.19681.1 /TIER=ConsEnd /STK=2 /UG=Rn.19681 /UG_TITLE=ESTs, Highly similar to T50611 hypothetical protein DKFZp434H2035.1 (H.sapiens) AI145899 leucine rich repeat (in FLII) interacting protein 2 Lrrfip2 301035 NM_001024761 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030275 // LRR domain binding // inferred from electronic annotation /// 0030275 // LRR domain binding // not recorded 1379283_at BE117687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117687 /DB_XREF=gi:8509792 /DB_XREF=UI-R-BS1-aze-g-04-0-UI.s1 /CLONE=UI-R-BS1-aze-g-04-0-UI /FEA=EST /CNT=9 /TID=Rn.8634.1 /TIER=ConsEnd /STK=2 /UG=Rn.8634 /UG_TITLE=ESTs BE117687 1379284_at AI411760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411760 /DB_XREF=gi:4255264 /DB_XREF=EST240054 /CLONE=RPLDJ10 /FEA=EST /CNT=8 /TID=Rn.11924.1 /TIER=ConsEnd /STK=2 /UG=Rn.11924 /UG_TITLE=ESTs AI411760 ubiquitin associated and SH3 domain containing, B Ubash3b 315579 NM_001191792 /// XM_001065047 /// XM_236104 1379285_at AA819788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819788 /DB_XREF=gi:4228046 /DB_XREF=UI-R-A0-aq-e-09-0-UI.s1 /CLONE=UI-R-A0-aq-e-09-0-UI /FEA=EST /CNT=8 /TID=Rn.4244.1 /TIER=ConsEnd /STK=2 /UG=Rn.4244 /UG_TITLE=ESTs AA819788 receptor (chemosensory) transporter protein 4 Rtp4 360733 NM_001108321 0001580 // detection of chemical stimulus involved in sensory perception of bitter taste // not recorded /// 0006612 // protein targeting to membrane // not recorded 0005737 // cytoplasm // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379286_at BM383184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383184 /DB_XREF=gi:18183237 /DB_XREF=UI-R-DS0-cjd-b-19-0-UI.s1 /CLONE=UI-R-DS0-cjd-b-19-0-UI /FEA=EST /CNT=8 /TID=Rn.18141.1 /TIER=ConsEnd /STK=2 /UG=Rn.18141 /UG_TITLE=ESTs BM383184 ring finger protein 152 Rnf152 293561 NM_001106305 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379287_at BF391639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391639 /DB_XREF=gi:11376493 /DB_XREF=UI-R-CA1-bcw-g-03-0-UI.s1 /CLONE=UI-R-CA1-bcw-g-03-0-UI /FEA=EST /CNT=8 /TID=Rn.61326.1 /TIER=ConsEnd /STK=2 /UG=Rn.61326 /UG_TITLE=ESTs, Weakly similar to S42834 F40F12.5 protein - Caenorhabditis elegans (C.elegans) BF391639 cylindromatosis (turban tumor syndrome) /// ubiquitin carboxyl-terminal hydrolase CYLD /// similar to cylindromatosis (turban tumor syndrome) Cyld /// LOC100362727 /// RGD1565647 100362727 /// 312937 /// 361373 NM_001017380 /// XM_002728578 /// XR_085832 /// XR_086249 0006412 // translation // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007346 // regulation of mitotic cell cycle // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity /// 0042347 // negative regulation of NF-kappaB import into nucleus // not recorded /// 0042347 // negative regulation of NF-kappaB import into nucleus // inferred from sequence or structural similarity /// 0070507 // regulation of microtubule cytoskeleton organization // not recorded /// 0070536 // protein K63-linked deubiquitination // not recorded /// 0070536 // protein K63-linked deubiquitination // inferred from sequence or structural similarity /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005840 // ribosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // not recorded /// 0005881 // cytoplasmic microtubule // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030496 // midbody // not recorded /// 0030496 // midbody // inferred from sequence or structural similarity /// 0031234 // extrinsic to internal side of plasma membrane // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0004843 // ubiquitin-specific protease activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070064 // proline-rich region binding // not recorded 1379288_at BM389308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389308 /DB_XREF=gi:18189361 /DB_XREF=UI-R-DZ0-cko-j-12-0-UI.s1 /CLONE=UI-R-DZ0-cko-j-12-0-UI /FEA=EST /CNT=8 /TID=Rn.3944.1 /TIER=ConsEnd /STK=2 /UG=Rn.3944 /UG_TITLE=ESTs BM389308 similar to RIKEN cDNA 0610037L13 RGD1559786 298384 NM_001034132 1379289_at BM385124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385124 /DB_XREF=gi:18185177 /DB_XREF=UI-R-CN1-cjm-d-22-0-UI.s2 /CLONE=UI-R-CN1-cjm-d-22-0-UI /FEA=EST /CNT=8 /TID=Rn.41210.1 /TIER=ConsEnd /STK=2 /UG=Rn.41210 /UG_TITLE=ESTs BM385124 xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) B4galt7 364675 NM_001031661 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006024 // glycosaminoglycan biosynthetic process // not recorded /// 0006024 // glycosaminoglycan biosynthetic process // inferred from sequence or structural similarity /// 0006024 // glycosaminoglycan biosynthetic process // inferred from electronic annotation /// 0006029 // proteoglycan metabolic process // not recorded /// 0006029 // proteoglycan metabolic process // inferred from sequence or structural similarity /// 0006029 // proteoglycan metabolic process // inferred from electronic annotation /// 0043206 // fibril organization // not recorded /// 0043206 // fibril organization // inferred from sequence or structural similarity /// 0043206 // fibril organization // inferred from electronic annotation /// 0048147 // negative regulation of fibroblast proliferation // not recorded /// 0048147 // negative regulation of fibroblast proliferation // inferred from sequence or structural similarity /// 0048147 // negative regulation of fibroblast proliferation // inferred from electronic annotation 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from electronic annotation 0008378 // galactosyltransferase activity // not recorded /// 0008378 // galactosyltransferase activity // inferred from sequence or structural similarity /// 0008378 // galactosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046525 // xylosylprotein 4-beta-galactosyltransferase activity // not recorded /// 0046525 // xylosylprotein 4-beta-galactosyltransferase activity // inferred from sequence or structural similarity /// 0046525 // xylosylprotein 4-beta-galactosyltransferase activity // inferred from electronic annotation 1379290_at BI294016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294016 /DB_XREF=gi:14956068 /DB_XREF=UI-R-DK0-cdy-c-11-0-UI.s1 /CLONE=UI-R-DK0-cdy-c-11-0-UI /FEA=EST /CNT=8 /TID=Rn.23277.1 /TIER=ConsEnd /STK=2 /UG=Rn.23277 /UG_TITLE=ESTs BI294016 centrosomal protein 63 Cep63 300963 NM_001037772 0000077 // DNA damage checkpoint // inferred from sequence or structural similarity /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0042770 // signal transduction in response to DNA damage // inferred from sequence or structural similarity /// 0051225 // spindle assembly // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation 0000922 // spindle pole // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // not recorded 1379291_at BF405732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405732 /DB_XREF=gi:11393707 /DB_XREF=UI-R-CA1-bje-e-03-0-UI.s1 /CLONE=UI-R-CA1-bje-e-03-0-UI /FEA=EST /CNT=8 /TID=Rn.63052.1 /TIER=ConsEnd /STK=2 /UG=Rn.63052 /UG_TITLE=ESTs BF405732 1379292_at AI412288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412288 /DB_XREF=gi:4255792 /DB_XREF=EST240585 /CLONE=RBRDN88 /FEA=EST /CNT=8 /TID=Rn.16701.1 /TIER=ConsEnd /STK=2 /UG=Rn.16701 /UG_TITLE=ESTs AI412288 thioredoxin domain containing 16 Txndc16 361025 XM_001072487 /// XM_341301 0045454 // cell redox homeostasis // inferred from electronic annotation 1379293_at AI104238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104238 /DB_XREF=gi:3708630 /DB_XREF=EST213527 /CLONE=RHEBZ20 /FEA=EST /CNT=8 /TID=Rn.22283.1 /TIER=ConsEnd /STK=2 /UG=Rn.22283 /UG_TITLE=ESTs, Weakly similar to GRAK RAT GRANZYME K PRECURSOR (R.norvegicus) AI104238 granzyme A Gzma 266708 NM_153468 0006508 // proteolysis // inferred from electronic annotation /// 0006922 // cleavage of lamin // not recorded /// 0006922 // cleavage of lamin // inferred from sequence or structural similarity /// 0006922 // cleavage of lamin // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from sequence or structural similarity /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // not recorded /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation 1379294_at AA957424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957424 /DB_XREF=gi:4277314 /DB_XREF=UI-R-E1-fy-e-08-0-UI.s1 /CLONE=UI-R-E1-fy-e-08-0-UI /FEA=EST /CNT=8 /TID=Rn.13051.1 /TIER=ConsEnd /STK=2 /UG=Rn.13051 /UG_TITLE=ESTs AA957424 1379295_at BI281946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281946 /DB_XREF=gi:14932206 /DB_XREF=UI-R-CU0s-cbu-e-07-0-UI.s1 /CLONE=UI-R-CU0s-cbu-e-07-0-UI /FEA=EST /CNT=8 /TID=Rn.37315.1 /TIER=ConsEnd /STK=2 /UG=Rn.37315 /UG_TITLE=ESTs, Weakly similar to GBGB_HUMAN GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)G(S)G(O) GAMMA-11 SUBUNIT (R.norvegicus) BI281946 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 Gngt2 690825 NM_001135767 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0005834 // heterotrimeric G-protein complex // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003924 // GTPase activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation 1379296_at AI137435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137435 /DB_XREF=gi:3638212 /DB_XREF=UI-R-C2p-ok-f-08-0-UI.s1 /CLONE=UI-R-C2p-ok-f-08-0-UI /FEA=EST /CNT=8 /TID=Rn.24744.1 /TIER=ConsEnd /STK=2 /UG=Rn.24744 /UG_TITLE=ESTs AI137435 1379297_at AI556361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556361 /DB_XREF=gi:4488724 /DB_XREF=UI-R-C2p-rg-e-08-0-UI.s1 /CLONE=UI-R-C2p-rg-e-08-0-UI /FEA=EST /CNT=8 /TID=Rn.1269.1 /TIER=ConsEnd /STK=2 /UG=Rn.1269 /UG_TITLE=ESTs, Weakly similar to M4 protein homolog (R.norvegicus) AI556361 Myelin expression factor 2 Myef2 679712 NM_001013205 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005794 // Golgi apparatus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1379298_at AA799711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799711 /DB_XREF=gi:2862666 /DB_XREF=EST189208 /CLONE=RHEAE37 /FEA=EST /CNT=15 /TID=Rn.8232.1 /TIER=ConsEnd /STK=2 /UG=Rn.8232 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) AA799711 interferon (alpha, beta and omega) receptor 1 Ifnar1 288264 NM_001105893 0007596 // blood coagulation // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0042110 // T cell activation // not recorded /// 0045351 // type I interferon biosynthetic process // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004904 // interferon receptor activity // not recorded /// 0005515 // protein binding // not recorded 1379299_at BE106364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106364 /DB_XREF=gi:8498466 /DB_XREF=UI-R-BT1-asv-b-02-0-UI.s1 /CLONE=UI-R-BT1-asv-b-02-0-UI /FEA=EST /CNT=13 /TID=Rn.6287.1 /TIER=ConsEnd /STK=2 /UG=Rn.6287 /UG_TITLE=ESTs, Moderately similar to A57090 CSA protein (H.sapiens) BE106364 excision repair cross-complementing rodent repair deficiency, complementation group 8 Ercc8 310071 NM_001107650 0000209 // protein polyubiquitination // inferred from electronic annotation /// 0000209 // protein polyubiquitination // not recorded /// 0006283 // transcription-coupled nucleotide-excision repair // inferred from electronic annotation /// 0006283 // transcription-coupled nucleotide-excision repair // not recorded /// 0006289 // nucleotide-excision repair // not recorded /// 0006289 // nucleotide-excision repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0009411 // response to UV // inferred from electronic annotation /// 0009411 // response to UV // not recorded /// 0010165 // response to X-ray // inferred from electronic annotation /// 0010165 // response to X-ray // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0045739 // positive regulation of DNA repair // inferred from electronic annotation /// 0045739 // positive regulation of DNA repair // not recorded /// 0051865 // protein autoubiquitination // inferred from electronic annotation /// 0051865 // protein autoubiquitination // not recorded 0000109 // nucleotide-excision repair complex // inferred from electronic annotation /// 0000109 // nucleotide-excision repair complex // not recorded /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded /// 0031464 // Cul4A-RING ubiquitin ligase complex // not recorded /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from electronic annotation 0003678 // DNA helicase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0032403 // protein complex binding // inferred from electronic annotation /// 0032403 // protein complex binding // not recorded 1379300_at AW520944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520944 /DB_XREF=gi:7163322 /DB_XREF=UI-R-BO0-agq-c-01-0-UI.s1 /CLONE=UI-R-BO0-agq-c-01-0-UI /FEA=EST /CNT=11 /TID=Rn.45074.1 /TIER=ConsEnd /STK=2 /UG=Rn.45074 /UG_TITLE=ESTs, Weakly similar to JC7350 N-acetylglucosamine-6-O-sulfotransferase (EC 2.8.2.-) (validated) - mouse (M.musculus) AW520944 1379301_at BM384812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384812 /DB_XREF=gi:18184865 /DB_XREF=UI-R-DY0-ckl-i-08-0-UI.s1 /CLONE=UI-R-DY0-ckl-i-08-0-UI /FEA=EST /CNT=10 /TID=Rn.28015.1 /TIER=ConsEnd /STK=2 /UG=Rn.28015 /UG_TITLE=ESTs BM384812 1379302_at AA848916 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848916 /DB_XREF=gi:2936456 /DB_XREF=EST191678 /CLONE=RLUAH89 /FEA=EST /CNT=9 /TID=Rn.3958.1 /TIER=ConsEnd /STK=2 /UG=Rn.3958 /UG_TITLE=ESTs AA848916 recombination signal binding protein for immunoglobulin kappa J region Rbpj 679028 NM_001106631 0001525 // angiogenesis // not recorded /// 0001837 // epithelial to mesenchymal transition // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0007219 // Notch signaling pathway // not recorded /// 0007507 // heart development // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009957 // epidermal cell fate specification // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0010977 // negative regulation of neuron projection development // inferred from mutant phenotype /// 0014912 // negative regulation of smooth muscle cell migration // inferred from mutant phenotype /// 0021983 // pituitary gland development // not recorded /// 0030097 // hemopoiesis // not recorded /// 0030182 // neuron differentiation // not recorded /// 0030183 // B cell differentiation // not recorded /// 0030216 // keratinocyte differentiation // not recorded /// 0034392 // negative regulation of smooth muscle cell apoptosis // inferred from mutant phenotype /// 0042742 // defense response to bacterium // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045941 // positive regulation of transcription // inferred from mutant phenotype /// 0048505 // regulation of timing of cell differentiation // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0048733 // sebaceous gland development // not recorded /// 0048820 // hair follicle maturation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0032993 // protein-DNA complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0030528 // transcription regulator activity // not recorded /// 0032403 // protein complex binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0047485 // protein N-terminus binding // not recorded 1379303_at AA964811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964811 /DB_XREF=gi:4279685 /DB_XREF=UI-R-C0-gx-a-06-0-UI.s1 /CLONE=UI-R-C0-gx-a-06-0-UI /FEA=EST /CNT=8 /TID=Rn.9570.1 /TIER=ConsEnd /STK=2 /UG=Rn.9570 /UG_TITLE=ESTs AA964811 ariadne homolog 2 (Drosophila) Arih2 316005 NM_001012275 0000209 // protein polyubiquitination // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0048588 // developmental cell growth // not recorded /// 0070534 // protein K63-linked ubiquitination // not recorded /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0071425 // hemopoietic stem cell proliferation // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379304_at BM388446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388446 /DB_XREF=gi:18188499 /DB_XREF=UI-R-DZ0-ckm-c-11-0-UI.s1 /CLONE=UI-R-DZ0-ckm-c-11-0-UI /FEA=EST /CNT=8 /TID=Rn.44767.1 /TIER=ConsEnd /STK=2 /UG=Rn.44767 /UG_TITLE=ESTs, Weakly similar to A43778 neurofilament triplet H protein - mouse (M.musculus) BM388446 Prkr interacting protein 1 (IL11 inducible) Prkrip1 498171 NM_001098793 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0042326 // negative regulation of phosphorylation // inferred from electronic annotation /// 0042326 // negative regulation of phosphorylation // not recorded 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // not recorded /// 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0004860 // protein kinase inhibitor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded 1379305_at BF284907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284907 /DB_XREF=gi:11215977 /DB_XREF=EST449498 /CLONE=RGIEX64 /FEA=EST /CNT=8 /TID=Rn.22127.1 /TIER=ConsEnd /STK=2 /UG=Rn.22127 /UG_TITLE=ESTs BF284907 vacuolar protein sorting 13 homolog D (S. cerevisiae) Vps13d 313825 NM_001108006 0008104 // protein localization // inferred from electronic annotation 1379306_at BE111794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111794 /DB_XREF=gi:8503899 /DB_XREF=UI-R-BJ1-avx-h-05-0-UI.s1 /CLONE=UI-R-BJ1-avx-h-05-0-UI /FEA=EST /CNT=8 /TID=Rn.19759.1 /TIER=ConsEnd /STK=2 /UG=Rn.19759 /UG_TITLE=ESTs BE111794 mitochondrial ribosomal protein L48 Mrpl48 293149 NM_001106282 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1379307_at BF283256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283256 /DB_XREF=gi:11214326 /DB_XREF=EST447847 /CLONE=RGIDZ42 /FEA=EST /CNT=8 /TID=Rn.24729.1 /TIER=ConsEnd /STK=2 /UG=Rn.24729 /UG_TITLE=ESTs BF283256 sodium channel and clathrin linker 1 Sclt1 266809 NM_153740 0045162 // clustering of voltage-gated sodium channels // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from mutant phenotype 0017080 // sodium channel regulator activity // inferred from mutant phenotype 1379308_at BF283228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283228 /DB_XREF=gi:11214298 /DB_XREF=EST447819 /CLONE=RGIDZ11 /FEA=EST /CNT=8 /TID=Rn.48588.1 /TIER=ConsEnd /STK=2 /UG=Rn.48588 /UG_TITLE=ESTs BF283228 1379309_at AI030742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030742 /DB_XREF=gi:3248568 /DB_XREF=UI-R-C0-jd-e-02-0-UI.s1 /CLONE=UI-R-C0-jd-e-02-0-UI /FEA=EST /CNT=8 /TID=Rn.7763.1 /TIER=ConsEnd /STK=2 /UG=Rn.7763 /UG_TITLE=ESTs AI030742 Transducin (beta)-like 1 X-linked receptor 1 Tbl1xr1 365755 NM_001108941 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005876 // spindle microtubule // not recorded /// 0017053 // transcriptional repressor complex // not recorded 0003677 // DNA binding // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008013 // beta-catenin binding // not recorded /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0042393 // histone binding // not recorded /// 0047485 // protein N-terminus binding // not recorded 1379310_at AI101880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101880 /DB_XREF=gi:3706730 /DB_XREF=EST211169 /CLONE=RBRBW34 /FEA=EST /CNT=8 /TID=Rn.4150.1 /TIER=ConsEnd /STK=2 /UG=Rn.4150 /UG_TITLE=ESTs AI101880 1379311_at AI177813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177813 /DB_XREF=gi:3728451 /DB_XREF=EST221459 /CLONE=RPLCG65 /FEA=EST /CNT=7 /TID=Rn.15775.1 /TIER=ConsEnd /STK=2 /UG=Rn.15775 /UG_TITLE=ESTs, Moderately similar to S27962 modulator recognition factor 1 (H.sapiens) AI177813 AT rich interactive domain 5A (Mrf1 like) Arid5a 316327 NM_001034934 0005622 // intracellular // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1379312_at AI706508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI706508 /DB_XREF=gi:4994408 /DB_XREF=UI-R-AE0-xf-a-12-0-UI.s1 /CLONE=UI-R-AE0-xf-a-12-0-UI /FEA=EST /CNT=7 /TID=Rn.9484.1 /TIER=ConsEnd /STK=2 /UG=Rn.9484 /UG_TITLE=ESTs, Weakly similar to JC7355 peroxisome proliferator-activated receptor gamma coactivator-1 - rat (R.norvegicus) AI706508 peroxisome proliferator-activated receptor gamma, coactivator-related 1 Pprc1 294007 NM_001106363 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379313_at BE108519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108519 /DB_XREF=gi:8500624 /DB_XREF=UI-R-CA0-axf-b-12-0-UI.s1 /CLONE=UI-R-CA0-axf-b-12-0-UI /FEA=EST /CNT=7 /TID=Rn.44009.1 /TIER=ConsEnd /STK=2 /UG=Rn.44009 /UG_TITLE=ESTs BE108519 1379314_at BF283985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283985 /DB_XREF=gi:11215055 /DB_XREF=EST448576 /CLONE=RGIEJ61 /FEA=EST /CNT=7 /TID=Rn.9256.1 /TIER=ConsEnd /STK=2 /UG=Rn.9256 /UG_TITLE=ESTs BF283985 Protein phosphatase 3, catalytic subunit, beta isoform Ppp3cb 24675 NM_017042 0001915 // negative regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0001915 // negative regulation of T cell mediated cytotoxicity // not recorded /// 0001975 // response to amphetamine // inferred from expression pattern /// 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0016311 // dephosphorylation // not recorded /// 0030217 // T cell differentiation // inferred from electronic annotation /// 0030217 // T cell differentiation // not recorded /// 0034097 // response to cytokine stimulus // inferred from electronic annotation /// 0034097 // response to cytokine stimulus // not recorded /// 0043029 // T cell homeostasis // inferred from electronic annotation /// 0043029 // T cell homeostasis // not recorded /// 0046716 // muscle cell homeostasis // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // not recorded /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0004723 // calcium-dependent protein serine/threonine phosphatase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from direct assay /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay 1379315_at BM385768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385768 /DB_XREF=gi:18185821 /DB_XREF=UI-R-CN1-clx-n-03-0-UI.s1 /CLONE=UI-R-CN1-clx-n-03-0-UI /FEA=EST /CNT=7 /TID=Rn.24007.1 /TIER=ConsEnd /STK=2 /UG=Rn.24007 /UG_TITLE=ESTs, Moderately similar to C11D_HUMAN Protein c11orf13 (HRAS1-related cluster protein 1) (H.sapiens) BM385768 Ras association (RalGDS/AF-6) domain family (N-terminal) member 7 Rassf7 293623 NM_001106317 0007165 // signal transduction // inferred from electronic annotation 0005515 // protein binding // not recorded 1379316_at BG373832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373832 /DB_XREF=gi:13270369 /DB_XREF=UI-R-CV1-bsk-d-09-0-UI.s1 /CLONE=UI-R-CV1-bsk-d-09-0-UI /FEA=EST /CNT=7 /TID=Rn.23312.1 /TIER=ConsEnd /STK=2 /UG=Rn.23312 /UG_TITLE=ESTs BG373832 1379317_a_at BI280308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280308 /DB_XREF=gi:14928962 /DB_XREF=UI-R-DE0-cag-d-08-0-UI.s1 /CLONE=UI-R-DE0-cag-d-08-0-UI /FEA=EST /CNT=7 /TID=Rn.12562.1 /TIER=ConsEnd /STK=2 /UG=Rn.12562 /UG_TITLE=ESTs, Highly similar to RRP5_HUMAN RRP5 PROTEIN HOMOLOG (H.sapiens) BI280308 programmed cell death 11 Pdcd11 309458 NM_001107604 0006396 // RNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded 1379318_at BI296812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296812 /DB_XREF=gi:14961611 /DB_XREF=UI-R-DK0-cfz-f-08-0-UI.s1 /CLONE=UI-R-DK0-cfz-f-08-0-UI /FEA=EST /CNT=7 /TID=Rn.15891.1 /TIER=ConsEnd /STK=2 /UG=Rn.15891 /UG_TITLE=ESTs BI296812 similar to RIKEN cDNA 2610019F03 LOC498662 498662 NM_001100791 1379319_at AI045149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045149 /DB_XREF=gi:3291968 /DB_XREF=UI-R-C1-kk-b-07-0-UI.s1 /CLONE=UI-R-C1-kk-b-07-0-UI /FEA=EST /CNT=7 /TID=Rn.16129.1 /TIER=ConsEnd /STK=2 /UG=Rn.16129 /UG_TITLE=ESTs AI045149 similar to RIKEN cDNA C230052I12 RGD1564719 502320 NM_001109335 0043240 // Fanconi anaemia nuclear complex // not recorded 0003682 // chromatin binding // not recorded /// 0005515 // protein binding // not recorded 1379320_at AI102591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102591 /DB_XREF=gi:3707328 /DB_XREF=EST211880 /CLONE=REMBP64 /FEA=EST /CNT=7 /TID=Rn.18606.1 /TIER=ConsEnd /STK=2 /UG=Rn.18606 /UG_TITLE=ESTs, Highly similar to SMD1_HUMAN SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1 (M.musculus) AI102591 Small nuclear ribonucleoprotein D1 Snrpd1 291794 NM_001106163 0000387 // spliceosomal snRNP assembly // not recorded /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379321_at AI180133 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180133 /DB_XREF=gi:3730771 /DB_XREF=EST223871 /CLONE=RSPCQ74 /FEA=EST /CNT=7 /TID=Rn.14721.1 /TIER=ConsEnd /STK=2 /UG=Rn.14721 /UG_TITLE=ESTs AI180133 1379322_at BI289174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289174 /DB_XREF=gi:14946478 /DB_XREF=UI-R-DK0-cfm-e-10-0-UI.s1 /CLONE=UI-R-DK0-cfm-e-10-0-UI /FEA=EST /CNT=7 /TID=Rn.20659.1 /TIER=ConsEnd /STK=2 /UG=Rn.20659 /UG_TITLE=ESTs, Highly similar to PRSC MOUSE 26S PROTEASOME REGULATORY SUBUNIT S12 (M.musculus) BI289174 proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 Psmd7 307821 NM_001107426 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation 0005515 // protein binding // not recorded 1379323_at BE109498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109498 /DB_XREF=gi:8501566 /DB_XREF=UI-R-BJ1-aut-d-09-0-UI.s1 /CLONE=UI-R-BJ1-aut-d-09-0-UI /FEA=EST /CNT=7 /TID=Rn.23564.1 /TIER=ConsEnd /STK=2 /UG=Rn.23564 /UG_TITLE=ESTs BE109498 transmembrane protein 203 Tmem203 311800 NM_001107819 1379324_at AW535283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535283 /DB_XREF=gi:7177697 /DB_XREF=UI-R-C4-alv-d-01-0-UI.s1 /CLONE=UI-R-C4-alv-d-01-0-UI /FEA=EST /CNT=7 /TID=Rn.21975.1 /TIER=ConsEnd /STK=2 /UG=Rn.21975 /UG_TITLE=ESTs AW535283 1379325_at BI274837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274837 /DB_XREF=gi:14886121 /DB_XREF=UI-R-CX0-bxa-f-04-0-UI.s1 /CLONE=UI-R-CX0-bxa-f-04-0-UI /FEA=EST /CNT=7 /TID=Rn.19972.1 /TIER=ConsEnd /STK=2 /UG=Rn.19972 /UG_TITLE=ESTs, Weakly similar to G01614 zinc finger protein 127 (H.sapiens) BI274837 makorin ring finger protein 1 Mkrn1 296988 NM_001004233 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379326_at AI169837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169837 /DB_XREF=gi:3709877 /DB_XREF=EST215740 /CLONE=RLIAT85 /FEA=EST /CNT=7 /TID=Rn.16893.1 /TIER=ConsEnd /STK=2 /UG=Rn.16893 /UG_TITLE=ESTs, Weakly similar to dJ413H6.1.1 (H.sapiens) AI169837 similar to 9530008L14Rik protein RGD1305679 361228 NM_001014144 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1379327_at BI292524 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292524 /DB_XREF=gi:14953107 /DB_XREF=UI-R-DO0-ciw-m-13-0-UI.s1 /CLONE=UI-R-DO0-ciw-m-13-0-UI /FEA=EST /CNT=7 /TID=Rn.48997.1 /TIER=ConsEnd /STK=2 /UG=Rn.48997 /UG_TITLE=ESTs, Moderately similar to SN21_HUMAN POSSIBLE GLOBAL TRANSCRIPTION ACTIVATOR SNF2L (H.sapiens) BI292524 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 Smarca5 307766 NM_001107419 0000183 // chromatin silencing at rDNA // not recorded /// 0006302 // double-strand break repair // not recorded /// 0006333 // chromatin assembly or disassembly // not recorded /// 0006334 // nucleosome assembly // not recorded /// 0006338 // chromatin remodeling // not recorded /// 0006338 // chromatin remodeling // inferred from electronic annotation /// 0006352 // transcription initiation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0009790 // embryo development // not recorded /// 0016584 // nucleosome positioning // not recorded /// 0043044 // ATP-dependent chromatin remodeling // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // not recorded /// 0045941 // positive regulation of transcription // not recorded 0000793 // condensed chromosome // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005677 // chromatin silencing complex // not recorded /// 0005730 // nucleolus // not recorded /// 0016585 // chromatin remodeling complex // inferred from electronic annotation /// 0031213 // RSF complex // not recorded /// 0043596 // nuclear replication fork // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0031491 // nucleosome binding // inferred from electronic annotation /// 0042393 // histone binding // not recorded 1379328_at AW434474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434474 /DB_XREF=gi:6965781 /DB_XREF=UI-R-BJ0p-afr-e-10-0-UI.s1 /CLONE=UI-R-BJ0p-afr-e-10-0-UI /FEA=EST /CNT=7 /TID=Rn.52625.1 /TIER=ConsEnd /STK=2 /UG=Rn.52625 /UG_TITLE=ESTs AW434474 Euchromatic histone lysine N-methyltransferase 2 Ehmt2 361798 NM_212463 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000239 // pachytene // inferred from electronic annotation /// 0000239 // pachytene // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007130 // synaptonemal complex assembly // inferred from electronic annotation /// 0007130 // synaptonemal complex assembly // not recorded /// 0007281 // germ cell development // not recorded /// 0007281 // germ cell development // inferred from electronic annotation /// 0007286 // spermatid development // inferred from electronic annotation /// 0007286 // spermatid development // not recorded /// 0009566 // fertilization // inferred from electronic annotation /// 0009566 // fertilization // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0035265 // organ growth // inferred from electronic annotation /// 0035265 // organ growth // not recorded /// 0051567 // histone H3-K9 methylation // inferred from electronic annotation /// 0051567 // histone H3-K9 methylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation 1379329_at AI600082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600082 /DB_XREF=gi:4609130 /DB_XREF=EST251785 /CLONE=REMDQ76 /FEA=EST /CNT=7 /TID=Rn.18796.1 /TIER=ConsEnd /STK=2 /UG=Rn.18796 /UG_TITLE=ESTs, Weakly similar to PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE (R.norvegicus) AI600082 similar to dimerization cofactor of hepatocyte nuclear factor 1 (HNF1) from muscle LOC685729 685729 XM_002725231 0006729 // tetrahydrobiopterin biosynthetic process // inferred from electronic annotation 0008124 // 4-alpha-hydroxytetrahydrobiopterin dehydratase activity // inferred from electronic annotation 1379330_s_at AI600082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600082 /DB_XREF=gi:4609130 /DB_XREF=EST251785 /CLONE=REMDQ76 /FEA=EST /CNT=7 /TID=Rn.18796.1 /TIER=ConsEnd /STK=2 /UG=Rn.18796 /UG_TITLE=ESTs, Weakly similar to PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE (R.norvegicus) AI600082 similar to dimerization cofactor of hepatocyte nuclear factor 1 (HNF1) from muscle LOC685729 685729 XM_002725231 0006729 // tetrahydrobiopterin biosynthetic process // inferred from electronic annotation 0008124 // 4-alpha-hydroxytetrahydrobiopterin dehydratase activity // inferred from electronic annotation 1379331_at AA965084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965084 /DB_XREF=gi:4279958 /DB_XREF=UI-R-C0-gz-b-06-0-UI.s1 /CLONE=UI-R-C0-gz-b-06-0-UI /FEA=EST /CNT=7 /TID=Rn.3715.1 /TIER=ConsEnd /STK=2 /UG=Rn.3715 /UG_TITLE=ESTs AA965084 0007165 // signal transduction // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation 1379332_at AI556426 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556426 /DB_XREF=gi:4488789 /DB_XREF=UI-R-C2p-rh-d-12-0-UI.s1 /CLONE=UI-R-C2p-rh-d-12-0-UI /FEA=EST /CNT=7 /TID=Rn.39063.1 /TIER=ConsEnd /STK=2 /UG=Rn.39063 /UG_TITLE=ESTs, Weakly similar to LIS1 MOUSE PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB ALPHA SUBUNIT (R.norvegicus) AI556426 1379333_at BI296377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296377 /DB_XREF=gi:14960741 /DB_XREF=UI-R-DK0-cez-f-08-0-UI.s1 /CLONE=UI-R-DK0-cez-f-08-0-UI /FEA=EST /CNT=7 /TID=Rn.38044.1 /TIER=ConsEnd /STK=2 /UG=Rn.38044 /UG_TITLE=ESTs BI296377 armadillo repeat containing, X-linked 6 Armcx6 363496 NM_001007757 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1379334_at BF547086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547086 /DB_XREF=gi:11638193 /DB_XREF=UI-R-C1-kw-c-01-0-UI.r1 /CLONE=UI-R-C1-kw-c-01-0-UI /FEA=EST /CNT=7 /TID=Rn.7547.1 /TIER=ConsEnd /STK=2 /UG=Rn.7547 /UG_TITLE=ESTs, Moderately similar to GCSP_HUMAN GLYCINE DEHYDROGENASE (H.sapiens) BF547086 Glycine dehydrogenase (decarboxylating) Gldc 309312 NM_001107583 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006544 // glycine metabolic process // inferred from electronic annotation /// 0019464 // glycine decarboxylation via glycine cleavage system // inferred from direct assay /// 0019464 // glycine decarboxylation via glycine cleavage system // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005960 // glycine cleavage complex // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004375 // glycine dehydrogenase (decarboxylating) activity // inferred from direct assay /// 0004375 // glycine dehydrogenase (decarboxylating) activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0016594 // glycine binding // inferred from direct assay /// 0016829 // lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from direct assay /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from direct assay 1379335_at AI639045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639045 /DB_XREF=gi:4700079 /DB_XREF=rx00586s /CLONE=rx00586 /FEA=EST /CNT=11 /TID=Rn.9450.2 /TIER=ConsEnd /STK=2 /UG=Rn.9450 /UG_TITLE=ESTs AI639045 poly(A) binding protein interacting protein 1 Paip1 365684 NM_001108937 0016070 // RNA metabolic process // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008494 // translation activator activity // not recorded /// 0008494 // translation activator activity // inferred from electronic annotation 1379336_at BF289150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289150 /DB_XREF=gi:11220220 /DB_XREF=EST453741 /CLONE=RGIHB64 /FEA=EST /CNT=9 /TID=Rn.45452.1 /TIER=ConsEnd /STK=2 /UG=Rn.45452 /UG_TITLE=ESTs BF289150 1379337_at BI284334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284334 /DB_XREF=gi:14936915 /DB_XREF=UI-R-CX0s-ccq-h-12-0-UI.s1 /CLONE=UI-R-CX0s-ccq-h-12-0-UI /FEA=EST /CNT=9 /TID=Rn.24905.1 /TIER=ConsEnd /STK=2 /UG=Rn.24905 /UG_TITLE=ESTs BI284334 FAST kinase domains 2 Fastkd2 301463 NM_001009673 0006915 // apoptosis // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0004672 // protein kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1379338_at AI044115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044115 /DB_XREF=gi:3291018 /DB_XREF=UI-R-C1-jv-e-05-0-UI.s1 /CLONE=UI-R-C1-jv-e-05-0-UI /FEA=EST /CNT=9 /TID=Rn.24167.1 /TIER=ConsEnd /STK=2 /UG=Rn.24167 /UG_TITLE=ESTs, Weakly similar to T26843 hypothetical protein Y43F4B.5 - Caenorhabditis elegans (C.elegans) AI044115 phosphoglucomutase 2-like 1 Pgm2l1 685076 NM_001109454 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0016868 // intramolecular transferase activity, phosphotransferases // inferred from electronic annotation 1379339_at BM390448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390448 /DB_XREF=gi:18190501 /DB_XREF=UI-R-CN1-cjq-d-14-0-UI.s1 /CLONE=UI-R-CN1-cjq-d-14-0-UI /FEA=EST /CNT=9 /TID=Rn.39338.1 /TIER=ConsEnd /STK=2 /UG=Rn.39338 /UG_TITLE=ESTs BM390448 isochorismatase domain containing 1 Isoc1 364879 NM_001014242 0008152 // metabolic process // inferred from electronic annotation 0005777 // peroxisome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation 1379340_at BM385282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385282 /DB_XREF=gi:18185335 /DB_XREF=UI-R-EB1-clf-l-08-0-UI.s1 /CLONE=UI-R-EB1-clf-l-08-0-UI /FEA=EST /CNT=8 /TID=Rn.9278.1 /TIER=ConsEnd /STK=2 /UG=Rn.9278 /UG_TITLE=ESTs BM385282 laminin, gamma 2 Lamc2 192362 NM_001100640 0007155 // cell adhesion // inferred from electronic annotation /// 0031581 // hemidesmosome assembly // not recorded 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from direct assay /// 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005607 // laminin-2 complex // inferred from direct assay /// 0005610 // laminin-5 complex // inferred from electronic annotation /// 0005610 // laminin-5 complex // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded 1379341_at BG378132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378132 /DB_XREF=gi:13302604 /DB_XREF=UI-R-CV1-bvo-c-12-0-UI.s1 /CLONE=UI-R-CV1-bvo-c-12-0-UI /FEA=EST /CNT=8 /TID=Rn.18185.1 /TIER=ConsEnd /STK=2 /UG=Rn.18185 /UG_TITLE=ESTs BG378132 USP6 N-terminal like Usp6nl 291309 NM_001106120 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1379342_at BI297113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297113 /DB_XREF=gi:14962201 /DB_XREF=UI-R-DK0-cdt-e-03-0-UI.s1 /CLONE=UI-R-DK0-cdt-e-03-0-UI /FEA=EST /CNT=8 /TID=Rn.8134.1 /TIER=ConsEnd /STK=2 /UG=Rn.8134 /UG_TITLE=ESTs, Weakly similar to TC17 RAT TRANSCRIPTION FACTOR 17 (R.norvegicus) BI297113 zinc finger protein 692 Znf692 303164 NM_001126272 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1379343_at BF404452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404452 /DB_XREF=gi:11392427 /DB_XREF=UI-R-CA1-bif-e-04-0-UI.s1 /CLONE=UI-R-CA1-bif-e-04-0-UI /FEA=EST /CNT=8 /TID=Rn.32655.1 /TIER=ConsEnd /STK=2 /UG=Rn.32655 /UG_TITLE=ESTs BF404452 similar to hypothetical protein FLJ22555 MGC94335 301418 NM_001004251 0005739 // mitochondrion // inferred from electronic annotation 1379344_at AI176057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176057 /DB_XREF=gi:3726695 /DB_XREF=EST219633 /CLONE=ROVBJ96 /FEA=EST /CNT=8 /TID=Rn.43961.1 /TIER=ConsEnd /STK=2 /UG=Rn.43961 /UG_TITLE=ESTs AI176057 1379345_at BM386752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386752 /DB_XREF=gi:18186800 /DB_XREF=UI-R-CN1-cjg-j-24-0-UI.s1 /CLONE=UI-R-CN1-cjg-j-24-0-UI /FEA=EST /CNT=8 /TID=Rn.31832.1 /TIER=ConsEnd /STK=2 /UG=Rn.31832 /UG_TITLE=ESTs, Highly similar to A Chain A, Murine Collagen Alpha1(Xv), Endostatin Domain (M.musculus) BM386752 collagen, type XV, alpha 1 Col15a1 298069 XM_001066530 /// XM_216399 0007155 // cell adhesion // inferred from electronic annotation 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1379346_at BI290578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290578 /DB_XREF=gi:14949279 /DB_XREF=UI-R-DK0-cgd-h-04-0-UI.s1 /CLONE=UI-R-DK0-cgd-h-04-0-UI /FEA=EST /CNT=8 /TID=Rn.14329.1 /TIER=ConsEnd /STK=2 /UG=Rn.14329 /UG_TITLE=ESTs, Weakly similar to S59383 probable membrane protein YLR418c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BI290578 cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) Cdc73 304832 NM_001024769 0006350 // transcription // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0010390 // histone monoubiquitination // inferred from electronic annotation /// 0010390 // histone monoubiquitination // not recorded /// 0033523 // histone H2B ubiquitination // inferred from electronic annotation /// 0033523 // histone H2B ubiquitination // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0016593 // Cdc73/Paf1 complex // inferred from electronic annotation /// 0016593 // Cdc73/Paf1 complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379347_at BM389290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389290 /DB_XREF=gi:18189343 /DB_XREF=UI-R-DZ0-cko-f-20-0-UI.s1 /CLONE=UI-R-DZ0-cko-f-20-0-UI /FEA=EST /CNT=8 /TID=Rn.6605.1 /TIER=ConsEnd /STK=2 /UG=Rn.6605 /UG_TITLE=ESTs BM389290 1379348_at BF420491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420491 /DB_XREF=gi:11408445 /DB_XREF=UI-R-BJ2-bpw-c-05-0-UI.s1 /CLONE=UI-R-BJ2-bpw-c-05-0-UI /FEA=EST /CNT=8 /TID=Rn.44853.1 /TIER=ConsEnd /STK=2 /UG=Rn.44853 /UG_TITLE=ESTs BF420491 exosome component 2 Exosc2 366017 NM_001108952 0005515 // protein binding // not recorded 1379349_a_at AI406710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406710 /DB_XREF=gi:4250214 /DB_XREF=EST234997 /CLONE=ROVDV96 /FEA=EST /CNT=8 /TID=Rn.36074.1 /TIER=ConsEnd /STK=2 /UG=Rn.36074 /UG_TITLE=ESTs AI406710 RAB, member RAS oncogene family-like 5 Rabl5 288585 NM_001011902 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1379350_at AI179648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179648 /DB_XREF=gi:3730286 /DB_XREF=EST223372 /CLONE=RSPCK02 /FEA=EST /CNT=8 /TID=Rn.63456.1 /TIER=ConsEnd /STK=2 /UG=Rn.63456 /UG_TITLE=ESTs, Highly similar to B42030 alpha-globin transcription factor CP2 - mouse (M.musculus) AI179648 transcription factor CP2 Tcfcp2 315309 NM_001134714 1379351_at BM390871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390871 /DB_XREF=gi:18190924 /DB_XREF=UI-R-CN1-cjp-c-15-0-UI.s1 /CLONE=UI-R-CN1-cjp-c-15-0-UI /FEA=EST /CNT=8 /TID=Rn.25044.1 /TIER=ConsEnd /STK=2 /UG=Rn.25044 /UG_TITLE=ESTs, Weakly similar to S56209 probable membrane protein YFL046w - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BM390871 coiled-coil domain containing 90A Ccdc90a 291034 XM_001060245 /// XM_214448 1379352_at BF406008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406008 /DB_XREF=gi:11393983 /DB_XREF=UI-R-CA1-bje-l-17-0-UI.s1 /CLONE=UI-R-CA1-bje-l-17-0-UI /FEA=EST /CNT=8 /TID=Rn.22148.1 /TIER=ConsEnd /STK=2 /UG=Rn.22148 /UG_TITLE=ESTs BF406008 phosphatidylinositol-4-phosphate 5-kinase, type I, beta Pip5k1b 309419 NM_001012743 0046488 // phosphatidylinositol metabolic process // inferred from electronic annotation /// 0046488 // phosphatidylinositol metabolic process // not recorded /// 0046854 // phosphoinositide phosphorylation // not recorded 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016307 // phosphatidylinositol phosphate kinase activity // inferred from electronic annotation /// 0016308 // 1-phosphatidylinositol-4-phosphate 5-kinase activity // inferred from electronic annotation /// 0016308 // 1-phosphatidylinositol-4-phosphate 5-kinase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation 1379353_at AI233726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233726 /DB_XREF=gi:3817606 /DB_XREF=EST230414 /CLONE=RKIDJ36 /FEA=EST /CNT=8 /TID=Rn.17217.1 /TIER=ConsEnd /STK=2 /UG=Rn.17217 /UG_TITLE=ESTs, Moderately similar to T08733 hypothetical protein DKFZp566E2346.1 (H.sapiens) AI233726 aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase Aasdhppt 300328 NM_001106798 0009059 // macromolecule biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000287 // magnesium ion binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008897 // holo-[acyl-carrier-protein] synthase activity // inferred from electronic annotation /// 0008897 // holo-[acyl-carrier-protein] synthase activity // not recorded /// 0008897 // holo-[acyl-carrier-protein] synthase activity // inferred from sequence or structural similarity /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379354_at AA851239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851239 /DB_XREF=gi:4131918 /DB_XREF=EST194007 /CLONE=RPLAE24 /FEA=EST /CNT=7 /TID=Rn.6718.1 /TIER=ConsEnd /STK=2 /UG=Rn.6718 /UG_TITLE=ESTs, Moderately similar to exostoses (multiple)-like 2; Exostoses, multiple, like 2 (Homo sapiens) (H.sapiens) AA851239 exostoses (multiple)-like 2 Extl2 310803 NM_001100704 0006044 // N-acetylglucosamine metabolic process // not recorded /// 0019276 // UDP-N-acetylgalactosamine metabolic process // not recorded 0005783 // endoplasmic reticulum // not recorded /// 0031227 // intrinsic to endoplasmic reticulum membrane // inferred from electronic annotation 0001888 // glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity // not recorded /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0035248 // alpha-1,4-N-acetylgalactosaminyltransferase activity // not recorded 1379355_at BM392046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392046 /DB_XREF=gi:18192099 /DB_XREF=UI-R-DO1-ckp-a-11-0-UI.s1 /CLONE=UI-R-DO1-ckp-a-11-0-UI /FEA=EST /CNT=7 /TID=Rn.41796.1 /TIER=ConsEnd /STK=2 /UG=Rn.41796 /UG_TITLE=ESTs, Highly similar to MA2X_HUMAN ALPHA-MANNOSIDASE IIX (H.sapiens) BM392046 mannosidase 2, alpha 2 Man2a2 308757 NM_001107527 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006013 // mannose metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004559 // alpha-mannosidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0015923 // mannosidase activity // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation 1379356_at AI574991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI574991 /DB_XREF=gi:4544987 /DB_XREF=UI-R-G0-ug-g-06-0-UI.s1 /CLONE=UI-R-G0-ug-g-06-0-UI /FEA=EST /CNT=7 /TID=Rn.15953.1 /TIER=ConsEnd /STK=2 /UG=Rn.15953 /UG_TITLE=ESTs AI574991 family with sequence similarity 102, member B Fam102b 365903 NM_001163568 1379357_at AI408767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408767 /DB_XREF=gi:4252271 /DB_XREF=EST237058 /CLONE=ROVEH02 /FEA=EST /CNT=7 /TID=Rn.21441.1 /TIER=ConsEnd /STK=2 /UG=Rn.21441 /UG_TITLE=ESTs, Weakly similar to POL1_HUMAN RETROVIRUS-RELATED POL POLYPROTEIN (H.sapiens) AI408767 1379358_at BE108208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108208 /DB_XREF=gi:8500278 /DB_XREF=UI-R-BS1-ayw-c-06-0-UI.s1 /CLONE=UI-R-BS1-ayw-c-06-0-UI /FEA=EST /CNT=7 /TID=Rn.32662.1 /TIER=ConsEnd /STK=2 /UG=Rn.32662 /UG_TITLE=ESTs BE108208 Sterile alpha motif domain containing 4A Samd4a 305826 NM_001107254 0006417 // regulation of translation // inferred from electronic annotation /// 0045727 // positive regulation of translation // inferred from electronic annotation /// 0045727 // positive regulation of translation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0030371 // translation repressor activity // inferred from electronic annotation /// 0030371 // translation repressor activity // not recorded 1379359_at BF407675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407675 /DB_XREF=gi:11395650 /DB_XREF=UI-R-BJ2-bqv-a-11-0-UI.s1 /CLONE=UI-R-BJ2-bqv-a-11-0-UI /FEA=EST /CNT=7 /TID=Rn.53959.1 /TIER=ConsEnd /STK=2 /UG=Rn.53959 /UG_TITLE=ESTs BF407675 1379360_at AI013789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013789 /DB_XREF=gi:3227845 /DB_XREF=EST208464 /CLONE=RSPBS84 /FEA=EST /CNT=7 /TID=Rn.36185.1 /TIER=ConsEnd /STK=2 /UG=Rn.36185 /UG_TITLE=ESTs, Moderately similar to 15E2_HUMAN PUTATIVE PROTEIN 15E1.2 (H.sapiens) AI013789 glutamyl-tRNA(Gln) amidotransferase, subunit C homolog (bacterial) Gatc 360821 NM_001108339 0006450 // regulation of translational fidelity // inferred from electronic annotation 0005739 // mitochondrion // not recorded 1379361_at BI273703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI273703 /DB_XREF=gi:14883922 /DB_XREF=UI-R-CW0-bvy-b-02-0-UI.s1 /CLONE=UI-R-CW0-bvy-b-02-0-UI /FEA=EST /CNT=7 /TID=Rn.25177.1 /TIER=ConsEnd /STK=2 /UG=Rn.25177 /UG_TITLE=ESTs BI273703 peroxisomal biogenesis factor 11 alpha Pex11a 85249 NM_053487 0007031 // peroxisome organization // not recorded /// 0007031 // peroxisome organization // inferred from sequence or structural similarity /// 0007031 // peroxisome organization // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from sequence or structural similarity /// 0007165 // signal transduction // inferred from electronic annotation /// 0016557 // peroxisome membrane biogenesis // inferred from direct assay /// 0016559 // peroxisome fission // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded 0005777 // peroxisome // inferred from electronic annotation /// 0005777 // peroxisome // not recorded /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0005779 // integral to peroxisomal membrane // not recorded /// 0005779 // integral to peroxisomal membrane // inferred from sequence or structural similarity /// 0005779 // integral to peroxisomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1379362_at BE111121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111121 /DB_XREF=gi:8503226 /DB_XREF=UI-R-BJ1-auz-h-03-0-UI.s1 /CLONE=UI-R-BJ1-auz-h-03-0-UI /FEA=EST /CNT=7 /TID=Rn.13585.1 /TIER=ConsEnd /STK=2 /UG=Rn.13585 /UG_TITLE=ESTs BE111121 1379363_at BF283311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283311 /DB_XREF=gi:11214381 /DB_XREF=EST447902 /CLONE=RGIEA19 /FEA=EST /CNT=7 /TID=Rn.24749.1 /TIER=ConsEnd /STK=2 /UG=Rn.24749 /UG_TITLE=ESTs BF283311 similar to Maltase-glucoamylase, intestinal LOC679818 679818 XR_085810 /// XR_086229 1379364_at BI273752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI273752 /DB_XREF=gi:14884014 /DB_XREF=UI-R-CW0-bvy-f-05-0-UI.s1 /CLONE=UI-R-CW0-bvy-f-05-0-UI /FEA=EST /CNT=7 /TID=Rn.18596.1 /TIER=ConsEnd /STK=2 /UG=Rn.18596 /UG_TITLE=ESTs BI273752 calmodulin regulated spectrin-associated protein 1 Camsap1 296580 NM_001168549 1379365_at BF281987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281987 /DB_XREF=gi:11213057 /DB_XREF=EST446578 /CLONE=RGIDA41 /FEA=EST /CNT=7 /TID=Rn.13664.1 /TIER=ConsEnd /STK=2 /UG=Rn.13664 /UG_TITLE=ESTs BF281987 chemokine (C-X-C motif) ligand 11 Cxcl11 305236 NM_182952 0006955 // immune response // inferred from mutant phenotype /// 0006955 // immune response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from mutant phenotype /// 0008009 // chemokine activity // inferred from electronic annotation /// 0042379 // chemokine receptor binding // traceable author statement 1379366_a_at AW529938 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529938 /DB_XREF=gi:7172352 /DB_XREF=UI-R-C4-alc-a-08-0-UI.s1 /CLONE=UI-R-C4-alc-a-08-0-UI /FEA=EST /CNT=1 /TID=Rn.40863.2 /TIER=ConsEnd /STK=1 /UG=Rn.40863 /UG_TITLE=ESTs AW529938 B-box and SPRY domain containing Bspry 64027 NM_022261 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from mutant phenotype /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379367_at BF388220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388220 /DB_XREF=gi:11373044 /DB_XREF=UI-R-CA1-bca-f-11-0-UI.s1 /CLONE=UI-R-CA1-bca-f-11-0-UI /FEA=EST /CNT=7 /TID=Rn.27527.1 /TIER=ConsEnd /STK=2 /UG=Rn.27527 /UG_TITLE=ESTs BF388220 similar to RIKEN cDNA 2810405K02 RGD1308251 362676 NM_001108697 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 1379368_at AI237606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237606 /DB_XREF=gi:3831112 /DB_XREF=EST234168 /CLONE=RPLDB39 /FEA=EST /CNT=7 /TID=Rn.20571.1 /TIER=ConsEnd /STK=2 /UG=Rn.20571 /UG_TITLE=ESTs AI237606 B-cell CLL/lymphoma 6 Bcl6 303836 NM_001107084 0000060 // protein import into nucleus, translocation // inferred from electronic annotation /// 0000060 // protein import into nucleus, translocation // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0001953 // negative regulation of cell-matrix adhesion // inferred from electronic annotation /// 0001953 // negative regulation of cell-matrix adhesion // not recorded /// 0002467 // germinal center formation // inferred from electronic annotation /// 0002467 // germinal center formation // not recorded /// 0002829 // negative regulation of type 2 immune response // inferred from electronic annotation /// 0002829 // negative regulation of type 2 immune response // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0007266 // Rho protein signal transduction // not recorded /// 0007266 // Rho protein signal transduction // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0030183 // B cell differentiation // inferred from electronic annotation /// 0030183 // B cell differentiation // not recorded /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // not recorded /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032319 // regulation of Rho GTPase activity // not recorded /// 0032764 // negative regulation of mast cell cytokine production // inferred from electronic annotation /// 0032764 // negative regulation of mast cell cytokine production // not recorded /// 0035024 // negative regulation of Rho protein signal transduction // inferred from electronic annotation /// 0035024 // negative regulation of Rho protein signal transduction // not recorded /// 0042092 // type 2 immune response // not recorded /// 0042092 // type 2 immune response // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043380 // regulation of memory T cell differentiation // inferred from electronic annotation /// 0043380 // regulation of memory T cell differentiation // not recorded /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045629 // negative regulation of T-helper 2 cell differentiation // inferred from electronic annotation /// 0045629 // negative regulation of T-helper 2 cell differentiation // not recorded /// 0048294 // negative regulation of isotype switching to IgE isotypes // inferred from electronic annotation /// 0048294 // negative regulation of isotype switching to IgE isotypes // not recorded /// 0048821 // erythrocyte development // inferred from electronic annotation /// 0048821 // erythrocyte development // not recorded /// 0050727 // regulation of inflammatory response // inferred from electronic annotation /// 0050727 // regulation of inflammatory response // not recorded /// 0051272 // positive regulation of cellular component movement // inferred from electronic annotation /// 0051272 // positive regulation of cellular component movement // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005657 // replication fork // inferred from electronic annotation /// 0005657 // replication fork // not recorded /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0031490 // chromatin DNA binding // inferred from electronic annotation /// 0031490 // chromatin DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1379369_at AI171526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171526 /DB_XREF=gi:3711566 /DB_XREF=EST217490 /CLONE=RMUBM14 /FEA=EST /CNT=7 /TID=Rn.22529.1 /TIER=ConsEnd /STK=2 /UG=Rn.22529 /UG_TITLE=ESTs AI171526 prickle homolog 1 (Drosophila) Prickle1 315259 NM_199396 0006606 // protein import into nucleus // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379370_at AA818657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818657 /DB_XREF=gi:4200468 /DB_XREF=UI-R-A0-az-g-06-0-UI.s1 /CLONE=UI-R-A0-az-g-06-0-UI /FEA=EST /CNT=7 /TID=Rn.22364.1 /TIER=ConsEnd /STK=2 /UG=Rn.22364 /UG_TITLE=ESTs AA818657 sarcospan Sspn 500364 NM_001109255 0016021 // integral to membrane // inferred from electronic annotation /// 0030133 // transport vesicle // not recorded /// 0042383 // sarcolemma // not recorded 1379371_at BF284791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284791 /DB_XREF=gi:11215861 /DB_XREF=EST449382 /CLONE=RGIEW38 /FEA=EST /CNT=7 /TID=Rn.25117.1 /TIER=ConsEnd /STK=2 /UG=Rn.25117 /UG_TITLE=ESTs BF284791 1379372_at AA849730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849730 /DB_XREF=gi:2937270 /DB_XREF=EST192497 /CLONE=RMUAI21 /FEA=EST /CNT=6 /TID=Rn.4033.1 /TIER=ConsEnd /STK=2 /UG=Rn.4033 /UG_TITLE=ESTs AA849730 1379373_at AI556457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556457 /DB_XREF=gi:4488820 /DB_XREF=UI-R-C2p-rh-g-11-0-UI.s1 /CLONE=UI-R-C2p-rh-g-11-0-UI /FEA=EST /CNT=6 /TID=Rn.22959.1 /TIER=ConsEnd /STK=2 /UG=Rn.22959 /UG_TITLE=ESTs AI556457 1379374_at AW526088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526088 /DB_XREF=gi:7168473 /DB_XREF=UI-R-BO1-aiz-a-12-0-UI.s1 /CLONE=UI-R-BO1-aiz-a-12-0-UI /FEA=EST /CNT=6 /TID=Rn.24329.1 /TIER=ConsEnd /STK=2 /UG=Rn.24329 /UG_TITLE=ESTs AW526088 lipid phosphate phosphatase-related protein type 4 Lppr4 295401 NM_001001508 0007409 // axonogenesis // inferred from direct assay /// 0046839 // phospholipid dephosphorylation // inferred from direct assay 0005887 // integral to plasma membrane // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008195 // phosphatidate phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042577 // lipid phosphatase activity // inferred from direct assay 1379375_at BE100812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100812 /DB_XREF=gi:8492711 /DB_XREF=UI-R-BJ1-auf-f-04-0-UI.s1 /CLONE=UI-R-BJ1-auf-f-04-0-UI /FEA=EST /CNT=6 /TID=Rn.3099.1 /TIER=ConsEnd /STK=2 /UG=Rn.3099 /UG_TITLE=ESTs BE100812 Platelet-derived growth factor alpha polypeptide Pdgfa 25266 NM_012801 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001942 // hair follicle development // inferred from electronic annotation /// 0001942 // hair follicle development // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0009611 // response to wounding // not recorded /// 0009611 // response to wounding // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010512 // negative regulation of phosphatidylinositol biosynthetic process // inferred from electronic annotation /// 0010512 // negative regulation of phosphatidylinositol biosynthetic process // not recorded /// 0010544 // negative regulation of platelet activation // inferred from electronic annotation /// 0010544 // negative regulation of platelet activation // not recorded /// 0014910 // regulation of smooth muscle cell migration // inferred from electronic annotation /// 0014910 // regulation of smooth muscle cell migration // not recorded /// 0030031 // cell projection assembly // inferred from electronic annotation /// 0030031 // cell projection assembly // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0042060 // wound healing // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043588 // skin development // inferred from electronic annotation /// 0043588 // skin development // not recorded /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // not recorded /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0048008 // platelet-derived growth factor receptor signaling pathway // not recorded /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048286 // lung alveolus development // not recorded /// 0048839 // inner ear development // inferred from expression pattern /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050919 // negative chemotaxis // inferred from electronic annotation /// 0050919 // negative chemotaxis // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0060683 // regulation of branching involved in salivary gland morphogenesis by epithelial-mesenchymal signaling // inferred from electronic annotation /// 0060683 // regulation of branching involved in salivary gland morphogenesis by epithelial-mesenchymal signaling // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005902 // microvillus // inferred from electronic annotation /// 0005902 // microvillus // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // not recorded 0005161 // platelet-derived growth factor receptor binding // inferred from electronic annotation /// 0005161 // platelet-derived growth factor receptor binding // not recorded /// 0005518 // collagen binding // inferred from electronic annotation /// 0005518 // collagen binding // not recorded /// 0008083 // growth factor activity // traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043498 // cell surface binding // inferred from electronic annotation /// 0043498 // cell surface binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0048407 // platelet-derived growth factor binding // inferred from electronic annotation /// 0048407 // platelet-derived growth factor binding // not recorded 1379376_at BG372891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372891 /DB_XREF=gi:13269428 /DB_XREF=UI-R-CV1-bru-b-06-0-UI.s1 /CLONE=UI-R-CV1-bru-b-06-0-UI /FEA=EST /CNT=6 /TID=Rn.16467.1 /TIER=ConsEnd /STK=2 /UG=Rn.16467 /UG_TITLE=ESTs BG372891 1379377_at BG371655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371655 /DB_XREF=gi:13268192 /DB_XREF=UI-R-BJ2-bor-d-10-0-UI.s1 /CLONE=UI-R-BJ2-bor-d-10-0-UI /FEA=EST /CNT=6 /TID=Rn.24196.1 /TIER=ConsEnd /STK=2 /UG=Rn.24196 /UG_TITLE=ESTs BG371655 ganglioside-induced differentiation-associated-protein 2 Gdap2 362004 NM_001013201 0032526 // response to retinoic acid // not recorded 1379378_at AI071605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071605 /DB_XREF=gi:3397820 /DB_XREF=UI-R-C2-mw-a-10-0-UI.s1 /CLONE=UI-R-C2-mw-a-10-0-UI /FEA=EST /CNT=6 /TID=Rn.20614.1 /TIER=ConsEnd /STK=2 /UG=Rn.20614 /UG_TITLE=ESTs, Weakly similar to T28894 hypothetical protein T14B4.2 - Caenorhabditis elegans (C.elegans) AI071605 mitochondrial ribosomal protein S18C Mrps18c 289469 NM_001105996 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005763 // mitochondrial small ribosomal subunit // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1379379_at BF392753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392753 /DB_XREF=gi:11377610 /DB_XREF=UI-R-CA0-bfm-h-02-0-UI.s1 /CLONE=UI-R-CA0-bfm-h-02-0-UI /FEA=EST /CNT=6 /TID=Rn.24082.1 /TIER=ConsEnd /STK=2 /UG=Rn.24082 /UG_TITLE=ESTs BF392753 1379380_at BI294414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294414 /DB_XREF=gi:14956842 /DB_XREF=UI-R-DK0-cei-e-12-0-UI.s1 /CLONE=UI-R-DK0-cei-e-12-0-UI /FEA=EST /CNT=6 /TID=Rn.22787.1 /TIER=ConsEnd /STK=2 /UG=Rn.22787 /UG_TITLE=ESTs BI294414 sprouty homolog 1, antagonist of FGF signaling (Drosophila) Spry1 294981 NM_001106427 0001656 // metanephros development // not recorded /// 0001656 // metanephros development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001759 // organ induction // not recorded /// 0001759 // organ induction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009966 // regulation of signal transduction // inferred from electronic annotation /// 0034261 // negative regulation of Ras GTPase activity // not recorded /// 0034261 // negative regulation of Ras GTPase activity // inferred from electronic annotation /// 0040037 // negative regulation of fibroblast growth factor receptor signaling pathway // not recorded /// 0040037 // negative regulation of fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // not recorded /// 0043407 // negative regulation of MAP kinase activity // inferred from electronic annotation /// 0046580 // negative regulation of Ras protein signal transduction // not recorded /// 0046580 // negative regulation of Ras protein signal transduction // inferred from electronic annotation /// 0051387 // negative regulation of nerve growth factor receptor signaling pathway // not recorded /// 0051387 // negative regulation of nerve growth factor receptor signaling pathway // inferred from electronic annotation /// 0070373 // negative regulation of ERK1 and ERK2 cascade // not recorded /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from electronic annotation 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1379381_at AI045321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045321 /DB_XREF=gi:3292140 /DB_XREF=UI-R-C1-kh-c-05-0-UI.s1 /CLONE=UI-R-C1-kh-c-05-0-UI /FEA=EST /CNT=6 /TID=Rn.16740.1 /TIER=ConsEnd /STK=2 /UG=Rn.16740 /UG_TITLE=ESTs, Weakly similar to IGEB MOUSE IGE-BINDING PROTEIN (M.musculus) AI045321 1379382_at AI144865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144865 /DB_XREF=gi:3666664 /DB_XREF=UI-R-BT0-pm-g-09-0-UI.s1 /CLONE=UI-R-BT0-pm-g-09-0-UI /FEA=EST /CNT=6 /TID=Rn.6373.1 /TIER=ConsEnd /STK=2 /UG=Rn.6373 /UG_TITLE=ESTs AI144865 1379383_at BF288259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288259 /DB_XREF=gi:11219329 /DB_XREF=EST452850 /CLONE=RGIGR65 /FEA=EST /CNT=6 /TID=Rn.46117.1 /TIER=ConsEnd /STK=2 /UG=Rn.46117 /UG_TITLE=ESTs BF288259 1379384_at BF288328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288328 /DB_XREF=gi:11219398 /DB_XREF=EST452919 /CLONE=RGIGS48 /FEA=EST /CNT=6 /TID=Rn.48181.1 /TIER=ConsEnd /STK=2 /UG=Rn.48181 /UG_TITLE=ESTs BF288328 Sp1 transcription factor Sp1 24790 NM_012655 0001503 // ossification // inferred from electronic annotation /// 0001503 // ossification // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001829 // trophectodermal cell differentiation // inferred from electronic annotation /// 0001829 // trophectodermal cell differentiation // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0001892 // embryonic placenta development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0030219 // megakaryocyte differentiation // inferred from electronic annotation /// 0030219 // megakaryocyte differentiation // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0043353 // enucleate erythrocyte differentiation // inferred from electronic annotation /// 0043353 // enucleate erythrocyte differentiation // not recorded /// 0043923 // positive regulation by host of viral transcription // inferred from electronic annotation /// 0043923 // positive regulation by host of viral transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045817 // positive regulation of transcription from RNA polymerase II promoter, global // inferred from electronic annotation /// 0045817 // positive regulation of transcription from RNA polymerase II promoter, global // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048596 // embryonic camera-type eye morphogenesis // inferred from electronic annotation /// 0048596 // embryonic camera-type eye morphogenesis // not recorded /// 0048706 // embryonic skeletal system development // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // not recorded /// 0060136 // embryonic process involved in female pregnancy // inferred from electronic annotation /// 0060136 // embryonic process involved in female pregnancy // not recorded /// 0060216 // definitive hemopoiesis // inferred from electronic annotation /// 0060216 // definitive hemopoiesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0032993 // protein-DNA complex // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // not recorded /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0035035 // histone acetyltransferase binding // inferred from physical interaction /// 0035326 // enhancer binding // inferred from electronic annotation /// 0035326 // enhancer binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379385_at AW534879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534879 /DB_XREF=gi:7177293 /DB_XREF=UI-R-BS0-anx-d-12-0-UI.s1 /CLONE=UI-R-BS0-anx-d-12-0-UI /FEA=EST /CNT=6 /TID=Rn.2870.1 /TIER=ConsEnd /STK=2 /UG=Rn.2870 /UG_TITLE=ESTs AW534879 tumor suppressing subtransferable candidate 1 Tssc1 362721 NM_001012192 0005515 // protein binding // not recorded 1379386_at BE107238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107238 /DB_XREF=gi:8499343 /DB_XREF=UI-R-BS1-ayr-e-03-0-UI.s1 /CLONE=UI-R-BS1-ayr-e-03-0-UI /FEA=EST /CNT=6 /TID=Rn.51142.1 /TIER=ConsEnd /STK=2 /UG=Rn.51142 /UG_TITLE=ESTs BE107238 G-2 and S-phase expressed 1 Gtse1 300126 NM_001130500 1379387_at AI639103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639103 /DB_XREF=gi:4700137 /DB_XREF=rx01964s /CLONE=rx01964 /FEA=EST /CNT=6 /TID=Rn.7834.1 /TIER=ConsEnd /STK=2 /UG=Rn.7834 /UG_TITLE=ESTs AI639103 1379388_at BI296311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296311 /DB_XREF=gi:14960626 /DB_XREF=UI-R-DK0-cey-h-08-0-UI.s1 /CLONE=UI-R-DK0-cey-h-08-0-UI /FEA=EST /CNT=6 /TID=Rn.28401.1 /TIER=ConsEnd /STK=2 /UG=Rn.28401 /UG_TITLE=ESTs BI296311 1379389_at AI409738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409738 /DB_XREF=gi:4253242 /DB_XREF=EST238030 /CLONE=RPLDI30 /FEA=EST /CNT=6 /TID=Rn.41169.1 /TIER=ConsEnd /STK=2 /UG=Rn.41169 /UG_TITLE=ESTs AI409738 1379390_at AA891414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891414 /DB_XREF=gi:3018293 /DB_XREF=EST195217 /CLONE=RHEAT83 /FEA=EST /CNT=6 /TID=Rn.1381.1 /TIER=ConsEnd /STK=2 /UG=Rn.1381 /UG_TITLE=ESTs AA891414 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 St6galnac2 303692 NM_001031652 0006486 // protein glycosylation // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation 0008373 // sialyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1379391_at AI103389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103389 /DB_XREF=gi:4134164 /DB_XREF=EST212678 /CLONE=REMCB40 /FEA=EST /CNT=6 /TID=Rn.22986.1 /TIER=ConsEnd /STK=2 /UG=Rn.22986 /UG_TITLE=ESTs AI103389 1379392_at AI105067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105067 /DB_XREF=gi:4134320 /DB_XREF=EST214356 /CLONE=RHECN21 /FEA=EST /CNT=6 /TID=Rn.41574.1 /TIER=ConsEnd /STK=2 /UG=Rn.41574 /UG_TITLE=ESTs, Weakly similar to ARHY RAT ADP-RIBOSYLARGININE HYDROLASE (R.norvegicus) AI105067 ADP-ribosylhydrolase like 1 Adprhl1 290880 NM_001013054 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// 0051725 // protein de-ADP-ribosylation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003875 // ADP-ribosylarginine hydrolase activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1379393_at AI231564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231564 /DB_XREF=gi:3815444 /DB_XREF=EST228252 /CLONE=REMDM11 /FEA=EST /CNT=6 /TID=Rn.24635.1 /TIER=ConsEnd /STK=2 /UG=Rn.24635 /UG_TITLE=ESTs AI231564 villin 1 Vil1 316521 NM_001108224 0007010 // cytoskeleton organization // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379394_at BF289573 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289573 /DB_XREF=gi:11220643 /DB_XREF=EST454164 /CLONE=RGIHI62 /FEA=EST /CNT=6 /TID=Rn.44015.1 /TIER=ConsEnd /STK=2 /UG=Rn.44015 /UG_TITLE=ESTs BF289573 1379395_a_at BI280018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280018 /DB_XREF=gi:14928400 /DB_XREF=UI-R-DD0-cbb-c-06-0-UI.s1 /CLONE=UI-R-DD0-cbb-c-06-0-UI /FEA=EST /CNT=6 /TID=Rn.11657.1 /TIER=ConsEnd /STK=2 /UG=Rn.11657 /UG_TITLE=ESTs, Weakly similar to IPK1 BOVIN HINT PROTEIN (R.norvegicus) BI280018 histidine triad nucleotide binding protein 2 Hint2 313491 NM_001107955 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation 1379396_at AI101913 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101913 /DB_XREF=gi:3706759 /DB_XREF=EST211202 /CLONE=RBRBW76 /FEA=EST /CNT=6 /TID=Rn.24911.1 /TIER=ConsEnd /STK=2 /UG=Rn.24911 /UG_TITLE=ESTs AI101913 engulfment and cell motility 1 Elmo1 361251 NM_001108415 0006909 // phagocytosis // inferred from electronic annotation /// 0006909 // phagocytosis // not recorded /// 0006911 // phagocytosis, engulfment // not recorded /// 0006928 // cellular component movement // not recorded /// 0016601 // Rac protein signal transduction // not recorded /// 0030029 // actin filament-based process // not recorded /// 0030036 // actin cytoskeleton organization // not recorded 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017124 // SH3 domain binding // not recorded 1379397_at BE106199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106199 /DB_XREF=gi:8498301 /DB_XREF=UI-R-BO1-asl-b-08-0-UI.s1 /CLONE=UI-R-BO1-asl-b-08-0-UI /FEA=EST /CNT=6 /TID=Rn.43530.1 /TIER=ConsEnd /STK=2 /UG=Rn.43530 /UG_TITLE=ESTs, Weakly similar to I65219 retinoid-related orphan receptor RZR-beta - rat (R.norvegicus) BE106199 RAR-related orphan receptor A Rora 300807 NM_001106834 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006809 // nitric oxide biosynthetic process // not recorded /// 0007623 // circadian rhythm // inferred from expression pattern /// 0021702 // cerebellar Purkinje cell differentiation // not recorded /// 0043030 // regulation of macrophage activation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046068 // cGMP metabolic process // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379398_at BM385853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385853 /DB_XREF=gi:18185906 /DB_XREF=UI-R-DM1-cke-o-18-0-UI.s1 /CLONE=UI-R-DM1-cke-o-18-0-UI /FEA=EST /CNT=6 /TID=Rn.17272.1 /TIER=ConsEnd /STK=2 /UG=Rn.17272 /UG_TITLE=ESTs BM385853 1379399_at AI711484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711484 /DB_XREF=gi:5001260 /DB_XREF=UI-R-AA1-zy-e-07-0-UI.s1 /CLONE=UI-R-AA1-zy-e-07-0-UI /FEA=EST /CNT=6 /TID=Rn.21651.1 /TIER=ConsEnd /STK=2 /UG=Rn.21651 /UG_TITLE=ESTs AI711484 coiled-coil and C2 domain containing 1A Cc2d1a 288908 NM_001013869 0006350 // transcription // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded 1379400_at AI044556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044556 /DB_XREF=gi:3291417 /DB_XREF=UI-R-C1-jw-a-05-0-UI.s1 /CLONE=UI-R-C1-jw-a-05-0-UI /FEA=EST /CNT=6 /TID=Rn.17900.1 /TIER=ConsEnd /STK=2 /UG=Rn.17900 /UG_TITLE=ESTs AI044556 aldehyde dehydrogenase 1 family, member L2 Aldh1l2 299699 NM_001191778 /// XM_001079663 /// XM_235005 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009258 // 10-formyltetrahydrofolate catabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000036 // acyl carrier activity // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016155 // formyltetrahydrofolate dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016742 // hydroxymethyl-, formyl- and related transferase activity // inferred from electronic annotation /// 0031177 // phosphopantetheine binding // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation 1379401_a_at AW918372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918372 /DB_XREF=gi:8084148 /DB_XREF=EST349676 /CLONE=RGIER42 /FEA=EST /CNT=1 /TID=Rn.22585.3 /TIER=ConsEnd /STK=0 /UG=Rn.22585 /UG_TITLE=ESTs AW918372 F-box protein 33 Fbxo33 314157 NM_001108023 1379402_at BE100533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100533 /DB_XREF=gi:8492426 /DB_XREF=UI-R-BJ1-aue-e-09-0-UI.s1 /CLONE=UI-R-BJ1-aue-e-09-0-UI /FEA=EST /CNT=6 /TID=Rn.13195.1 /TIER=ConsEnd /STK=2 /UG=Rn.13195 /UG_TITLE=ESTs, Weakly similar to T42751 sulfonylurea receptor 2 - rat (R.norvegicus) BE100533 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 Abcc4 170924 NM_133411 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0031088 // platelet dense granule membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 1379403_at BG378210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378210 /DB_XREF=gi:13302682 /DB_XREF=UI-R-CV1-bvp-c-10-0-UI.s1 /CLONE=UI-R-CV1-bvp-c-10-0-UI /FEA=EST /CNT=6 /TID=Rn.15845.1 /TIER=ConsEnd /STK=2 /UG=Rn.15845 /UG_TITLE=ESTs BG378210 Fc fragment of IgG, receptor, transporter, alpha Fcgrt 29558 NM_033351 0006955 // immune response // inferred from electronic annotation /// 0006959 // humoral immune response // traceable author statement /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0019770 // IgG receptor activity // traceable author statement /// 0019864 // IgG binding // inferred from electronic annotation /// 0030881 // beta-2-microglobulin binding // inferred from direct assay 1379404_at AI598327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598327 /DB_XREF=gi:4607375 /DB_XREF=EST250030 /CLONE=REMDO16 /FEA=EST /CNT=6 /TID=Rn.15097.2 /TIER=ConsEnd /STK=2 /UG=Rn.15097 /UG_TITLE=ESTs AI598327 1379405_at AI235642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235642 /DB_XREF=gi:4136117 /DB_XREF=EST232204 /CLONE=ROVCU50 /FEA=EST /CNT=6 /TID=Rn.24198.1 /TIER=ConsEnd /STK=2 /UG=Rn.24198 /UG_TITLE=ESTs AI235642 0006350 // transcription // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1379406_at AA925559 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925559 /DB_XREF=gi:4236750 /DB_XREF=UI-R-A1-er-e-03-0-UI.s1 /CLONE=UI-R-A1-er-e-03-0-UI /FEA=EST /CNT=6 /TID=Rn.25196.1 /TIER=ConsEnd /STK=2 /UG=Rn.25196 /UG_TITLE=ESTs AA925559 similar to chromosome 14 open reading frame 21 RGD1308396 290235 NM_001106040 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1379407_at BE104538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104538 /DB_XREF=gi:8496638 /DB_XREF=UI-R-BX0-arq-e-08-0-UI.s1 /CLONE=UI-R-BX0-arq-e-08-0-UI /FEA=EST /CNT=6 /TID=Rn.43535.1 /TIER=ConsEnd /STK=2 /UG=Rn.43535 /UG_TITLE=ESTs BE104538 IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) Imp4 316317 NM_001009700 0006364 // rRNA processing // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1379408_at AW916148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916148 /DB_XREF=gi:8081866 /DB_XREF=EST347452 /CLONE=RGIDI64 /FEA=EST /CNT=6 /TID=Rn.14290.1 /TIER=ConsEnd /STK=2 /UG=Rn.14290 /UG_TITLE=ESTs AW916148 PHD finger protein 20 Phf20 311575 NM_001107795 0005622 // intracellular // inferred from electronic annotation /// 0071339 // MLL1 complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379409_at AW915474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915474 /DB_XREF=gi:8081171 /DB_XREF=EST346778 /CLONE=RGICV78 /FEA=EST /CNT=6 /TID=Rn.22888.1 /TIER=ConsEnd /STK=2 /UG=Rn.22888 /UG_TITLE=ESTs AW915474 Ataxin 7 Atxn7 361015 XM_001069337 /// XM_002725039 /// XM_002728181 /// XM_341290 0016578 // histone deubiquitination // not recorded /// 0042326 // negative regulation of phosphorylation // not recorded /// 0043569 // negative regulation of insulin-like growth factor receptor signaling pathway // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003682 // chromatin binding // not recorded /// 0005515 // protein binding // not recorded 1379410_at AA925019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925019 /DB_XREF=gi:4236210 /DB_XREF=UI-R-A1-ei-f-06-0-UI.s1 /CLONE=UI-R-A1-ei-f-06-0-UI /FEA=EST /CNT=6 /TID=Rn.8379.1 /TIER=ConsEnd /STK=2 /UG=Rn.8379 /UG_TITLE=ESTs AA925019 1379411_at AI180253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180253 /DB_XREF=gi:3730891 /DB_XREF=EST223996 /CLONE=RSPCS48 /FEA=EST /CNT=6 /TID=Rn.13123.1 /TIER=ConsEnd /STK=2 /UG=Rn.13123 /UG_TITLE=ESTs AI180253 1379412_at BF559875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559875 /DB_XREF=gi:11669605 /DB_XREF=UI-R-E1-gl-a-03-0-UI.r1 /CLONE=UI-R-E1-gl-a-03-0-UI /FEA=EST /CNT=6 /TID=Rn.25149.1 /TIER=ConsEnd /STK=2 /UG=Rn.25149 /UG_TITLE=ESTs BF559875 1379413_at BF285393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285393 /DB_XREF=gi:11216553 /DB_XREF=EST450074 /CLONE=RGIFF84 /FEA=EST /CNT=6 /TID=Rn.41525.1 /TIER=ConsEnd /STK=2 /UG=Rn.41525 /UG_TITLE=ESTs BF285393 nicotinamide nucleotide adenylyltransferase 1 Nmnat1 298653 NM_001037556 0009058 // biosynthetic process // inferred from electronic annotation /// 0009435 // NAD biosynthetic process // inferred from electronic annotation /// 0009435 // NAD biosynthetic process // not recorded /// 0019674 // NAD metabolic process // not recorded /// 0043526 // neuroprotection // inferred from electronic annotation /// 0043526 // neuroprotection // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0000309 // nicotinamide-nucleotide adenylyltransferase activity // inferred from electronic annotation /// 0000309 // nicotinamide-nucleotide adenylyltransferase activity // not recorded /// 0004515 // nicotinate-nucleotide adenylyltransferase activity // inferred from electronic annotation /// 0004515 // nicotinate-nucleotide adenylyltransferase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1379414_at AA997596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997596 /DB_XREF=gi:4284834 /DB_XREF=UI-R-C0-hy-d-08-0-UI.s1 /CLONE=UI-R-C0-hy-d-08-0-UI /FEA=EST /CNT=6 /TID=Rn.12750.1 /TIER=ConsEnd /STK=2 /UG=Rn.12750 /UG_TITLE=ESTs AA997596 ubiquitin-conjugating enzyme E2Q family-like 1 Ube2ql1 679949 NM_001145163 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1379415_at AA998194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998194 /DB_XREF=gi:4288173 /DB_XREF=UI-R-C0-ib-b-02-0-UI.s1 /CLONE=UI-R-C0-ib-b-02-0-UI /FEA=EST /CNT=6 /TID=Rn.24532.1 /TIER=ConsEnd /STK=2 /UG=Rn.24532 /UG_TITLE=ESTs AA998194 1379416_at AW535897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535897 /DB_XREF=gi:7178311 /DB_XREF=UI-R-BS0-aoc-f-01-0-UI.s1 /CLONE=UI-R-BS0-aoc-f-01-0-UI /FEA=EST /CNT=6 /TID=Rn.48574.1 /TIER=ConsEnd /STK=2 /UG=Rn.48574 /UG_TITLE=ESTs AW535897 1379417_at AA956668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956668 /DB_XREF=gi:4239142 /DB_XREF=UI-R-E1-fl-f-01-0-UI.s1 /CLONE=UI-R-E1-fl-f-01-0-UI /FEA=EST /CNT=6 /TID=Rn.9052.1 /TIER=ConsEnd /STK=2 /UG=Rn.9052 /UG_TITLE=ESTs AA956668 midasin homolog (yeast) Mdn1 362498 XM_002726504 /// XM_002729468 0043254 // regulation of protein complex assembly // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation 1379418_at AW916753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916753 /DB_XREF=gi:8082593 /DB_XREF=EST348161 /CLONE=RGIDV82 /FEA=EST /CNT=6 /TID=Rn.23963.1 /TIER=ConsEnd /STK=2 /UG=Rn.23963 /UG_TITLE=ESTs AW916753 1379419_at AA962979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA962979 /DB_XREF=gi:4277950 /DB_XREF=UI-R-E1-fx-h-07-0-UI.s1 /CLONE=UI-R-E1-fx-h-07-0-UI /FEA=EST /CNT=6 /TID=Rn.12069.1 /TIER=ConsEnd /STK=2 /UG=Rn.12069 /UG_TITLE=ESTs AA962979 transmembrane protein 184C Tmem184c 291946 NM_178330 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1379420_at AI145019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145019 /DB_XREF=gi:3666818 /DB_XREF=UI-R-BT0-pr-d-12-0-UI.s1 /CLONE=UI-R-BT0-pr-d-12-0-UI /FEA=EST /CNT=6 /TID=Rn.27771.1 /TIER=ConsEnd /STK=2 /UG=Rn.27771 /UG_TITLE=ESTs AI145019 similar to Dehydrogenase/reductase SDR family member 7 precursor (Retinal short-chain dehydrogenase/reductase 4) RGD1565002 299135 XM_001080634 /// XM_216735 0055114 // oxidation reduction // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1379421_at BF285921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285921 /DB_XREF=gi:11216991 /DB_XREF=EST450512 /CLONE=RGIFL11 /FEA=EST /CNT=6 /TID=Rn.55370.1 /TIER=ConsEnd /STK=2 /UG=Rn.55370 /UG_TITLE=ESTs BF285921 1379422_at AI145871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145871 /DB_XREF=gi:3667670 /DB_XREF=UI-R-BT0-qg-a-03-0-UI.s1 /CLONE=UI-R-BT0-qg-a-03-0-UI /FEA=EST /CNT=6 /TID=Rn.29819.1 /TIER=ConsEnd /STK=2 /UG=Rn.29819 /UG_TITLE=ESTs AI145871 asparagine-linked glycosylation 13 homolog (S. cerevisiae) Alg13 300284 NM_001013951 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0030259 // lipid glycosylation // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation 0004577 // N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation 1379423_at AA963364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963364 /DB_XREF=gi:4278288 /DB_XREF=UI-R-E1-ga-g-09-0-UI.s1 /CLONE=UI-R-E1-ga-g-09-0-UI /FEA=EST /CNT=6 /TID=Rn.11453.1 /TIER=ConsEnd /STK=2 /UG=Rn.11453 /UG_TITLE=ESTs AA963364 Ras suppressor protein 1 Rsu1 680419 NM_001109404 0007265 // Ras protein signal transduction // not recorded 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379424_at BE115825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115825 /DB_XREF=gi:8507930 /DB_XREF=UI-R-BS1-axv-c-07-0-UI.s1 /CLONE=UI-R-BS1-axv-c-07-0-UI /FEA=EST /CNT=6 /TID=Rn.43966.1 /TIER=ConsEnd /STK=2 /UG=Rn.43966 /UG_TITLE=ESTs, Highly similar to T17310 hypothetical protein DKFZp434B168.1 (H.sapiens) BE115825 integrator complex subunit 7 Ints7 289382 NM_001191675 /// XM_001067053 /// XM_223075 0016180 // snRNA processing // not recorded 0032039 // integrator complex // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379425_at AI549208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549208 /DB_XREF=gi:4466696 /DB_XREF=UI-R-C3-ts-h-12-0-UI.s1 /CLONE=UI-R-C3-ts-h-12-0-UI /FEA=EST /CNT=6 /TID=Rn.35470.1 /TIER=ConsEnd /STK=2 /UG=Rn.35470 /UG_TITLE=ESTs AI549208 defects in morphology 1 homolog (S. cerevisiae) Dem1 313563 NM_001107973 1379426_at AW916940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916940 /DB_XREF=gi:8082678 /DB_XREF=EST348244 /CLONE=RGIDW91 /FEA=EST /CNT=6 /TID=Rn.49249.1 /TIER=ConsEnd /STK=2 /UG=Rn.49249 /UG_TITLE=ESTs AW916940 1379427_at AI137488 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137488 /DB_XREF=gi:3638265 /DB_XREF=UI-R-C2p-ol-g-11-0-UI.s1 /CLONE=UI-R-C2p-ol-g-11-0-UI /FEA=EST /CNT=6 /TID=Rn.6400.1 /TIER=ConsEnd /STK=2 /UG=Rn.6400 /UG_TITLE=ESTs AI137488 progesterone receptor membrane component 2 Pgrmc2 361940 NM_001008374 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005496 // steroid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation 1379428_x_at AA964532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964532 /DB_XREF=gi:4279406 /DB_XREF=UI-R-C0-gv-h-04-0-UI.s1 /CLONE=UI-R-C0-gv-h-04-0-UI /FEA=EST /CNT=6 /TID=Rn.11833.1 /TIER=ConsEnd /STK=2 /UG=Rn.11833 /UG_TITLE=ESTs AA964532 1379429_at AI045807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045807 /DB_XREF=gi:3292626 /DB_XREF=UI-R-C0-jq-c-12-0-UI.s2 /CLONE=UI-R-C0-jq-c-12-0-UI /FEA=EST /CNT=11 /TID=Rn.16505.2 /TIER=ConsEnd /STK=2 /UG=Rn.16505 /UG_TITLE=ESTs AI045807 1379430_at BM390207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390207 /DB_XREF=gi:18190260 /DB_XREF=UI-R-CN1-cjq-e-01-0-UI.s1 /CLONE=UI-R-CN1-cjq-e-01-0-UI /FEA=EST /CNT=9 /TID=Rn.8360.1 /TIER=ConsEnd /STK=2 /UG=Rn.8360 /UG_TITLE=ESTs BM390207 1379431_at AW918368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918368 /DB_XREF=gi:8084144 /DB_XREF=EST349672 /CLONE=RGIER38 /FEA=EST /CNT=8 /TID=Rn.8749.1 /TIER=ConsEnd /STK=2 /UG=Rn.8749 /UG_TITLE=ESTs AW918368 1379432_at AW918404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918404 /DB_XREF=gi:8084180 /DB_XREF=EST349708 /CLONE=RGIER78 /FEA=EST /CNT=8 /TID=Rn.19424.1 /TIER=ConsEnd /STK=2 /UG=Rn.19424 /UG_TITLE=ESTs AW918404 1379433_at AI059449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059449 /DB_XREF=gi:3333226 /DB_XREF=UI-R-C1-kw-g-12-0-UI.s1 /CLONE=UI-R-C1-kw-g-12-0-UI /FEA=EST /CNT=7 /TID=Rn.19464.1 /TIER=ConsEnd /STK=2 /UG=Rn.19464 /UG_TITLE=ESTs AI059449 phosphoinositide-3-kinase, class 2, alpha polypeptide Pik3c2a 361632 NM_001108500 0007154 // cell communication // inferred from electronic annotation /// 0046854 // phosphoinositide phosphorylation // inferred from electronic annotation /// 0046854 // phosphoinositide phosphorylation // not recorded /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation 0005942 // phosphoinositide 3-kinase complex // inferred from electronic annotation 0004428 // inositol or phosphatidylinositol kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1379434_at BE100206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100206 /DB_XREF=gi:8492094 /DB_XREF=UI-R-BJ1-ats-h-09-0-UI.s1 /CLONE=UI-R-BJ1-ats-h-09-0-UI /FEA=EST /CNT=7 /TID=Rn.3124.2 /TIER=ConsEnd /STK=2 /UG=Rn.3124 /UG_TITLE=ESTs, Highly similar to FGD1 MOUSE PUTATIVE RHORAC GUANINE NUCLEOTIDE EXCHANGE FACTOR (M.musculus) BE100206 FYVE, RhoGEF and PH domain containing 1 Fgd1 363460 NM_001037546 0006915 // apoptosis // not recorded /// 0007010 // cytoskeleton organization // not recorded /// 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0043088 // regulation of Cdc42 GTPase activity // inferred from electronic annotation /// 0043088 // regulation of Cdc42 GTPase activity // not recorded /// 0046847 // filopodium assembly // inferred from electronic annotation /// 0046847 // filopodium assembly // not recorded 0001726 // ruffle // inferred from electronic annotation /// 0001726 // ruffle // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // not recorded /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0031267 // small GTPase binding // inferred from electronic annotation /// 0031267 // small GTPase binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1379435_at AI599463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599463 /DB_XREF=gi:4608511 /DB_XREF=EST251166 /CLONE=REMDW52 /FEA=EST /CNT=7 /TID=Rn.40166.1 /TIER=ConsEnd /STK=2 /UG=Rn.40166 /UG_TITLE=ESTs, Weakly similar to deoxycytidine kinase (Rattus norvegicus) (R.norvegicus) AI599463 deoxyguanosine kinase Dguok 297389 NM_001106602 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0010977 // negative regulation of neuron projection development // inferred from mutant phenotype /// 0046070 // dGTP metabolic process // not recorded 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded 0004138 // deoxyguanosine kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1379436_a_at AA945875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945875 /DB_XREF=gi:4132631 /DB_XREF=EST201374 /CLONE=RLUAW34 /FEA=EST /CNT=7 /TID=Rn.40488.1 /TIER=ConsEnd /STK=2 /UG=Rn.40488 /UG_TITLE=ESTs, Weakly similar to S12207 hypothetical protein (M.musculus) AA945875 hypothetical LOC100360211 LOC100360211 100360211 XR_086147 1379437_at AW918480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918480 /DB_XREF=gi:8084257 /DB_XREF=EST349784 /CLONE=RGIES83 /FEA=EST /CNT=7 /TID=Rn.46528.1 /TIER=ConsEnd /STK=2 /UG=Rn.46528 /UG_TITLE=ESTs AW918480 1379438_at AA944576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944576 /DB_XREF=gi:4132428 /DB_XREF=EST200075 /CLONE=REMAL31 /FEA=EST /CNT=7 /TID=Rn.7758.2 /TIER=ConsEnd /STK=2 /UG=Rn.7758 /UG_TITLE=ESTs AA944576 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 Smarcad1 312398 NM_001107864 0000018 // regulation of DNA recombination // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1379439_at AA850609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850609 /DB_XREF=gi:2938149 /DB_XREF=EST193377 /FEA=EST /CNT=7 /TID=Rn.6858.1 /TIER=ConsEnd /STK=2 /UG=Rn.6858 /UG_TITLE=ESTs AA850609 zinc finger and BTB domain containing 44 Zbtb44 363035 NM_001034942 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379440_at AW144239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144239 /DB_XREF=gi:6164138 /DB_XREF=EST294535 /CLONE=RGICO04 /FEA=EST /CNT=7 /TID=Rn.38925.1 /TIER=ConsEnd /STK=2 /UG=Rn.38925 /UG_TITLE=ESTs AW144239 follistatin-like 3 (secreted glycoprotein) Fstl3 114031 NM_053629 0001503 // ossification // inferred from electronic annotation /// 0002244 // hemopoietic progenitor cell differentiation // inferred from electronic annotation /// 0002244 // hemopoietic progenitor cell differentiation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0007283 // spermatogenesis // non-traceable author statement /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0022409 // positive regulation of cell-cell adhesion // inferred from electronic annotation /// 0022409 // positive regulation of cell-cell adhesion // not recorded /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0032926 // negative regulation of activin receptor signaling pathway // inferred from electronic annotation /// 0032926 // negative regulation of activin receptor signaling pathway // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045671 // negative regulation of osteoclast differentiation // inferred from electronic annotation /// 0045671 // negative regulation of osteoclast differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0090101 // negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway // not recorded /// 0090101 // negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0030141 // stored secretory granule // inferred from mutant phenotype 0001968 // fibronectin binding // inferred from electronic annotation /// 0001968 // fibronectin binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0048185 // activin binding // inferred from electronic annotation /// 0048185 // activin binding // not recorded 1379441_at AA965092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965092 /DB_XREF=gi:4279966 /DB_XREF=UI-R-C0-gz-c-02-0-UI.s1 /CLONE=UI-R-C0-gz-c-02-0-UI /FEA=EST /CNT=6 /TID=Rn.47758.1 /TIER=ConsEnd /STK=2 /UG=Rn.47758 /UG_TITLE=ESTs AA965092 ring finger protein 160 Rnf160 288308 NM_001024235 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379442_at BF284019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284019 /DB_XREF=gi:11215089 /DB_XREF=EST448610 /CLONE=RGIEJ96 /FEA=EST /CNT=6 /TID=Rn.28410.1 /TIER=ConsEnd /STK=2 /UG=Rn.28410 /UG_TITLE=ESTs BF284019 1379443_at BE120719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120719 /DB_XREF=gi:8512824 /DB_XREF=UI-R-CA0-bay-g-04-0-UI.s1 /CLONE=UI-R-CA0-bay-g-04-0-UI /FEA=EST /CNT=6 /TID=Rn.43920.1 /TIER=ConsEnd /STK=2 /UG=Rn.43920 /UG_TITLE=ESTs BE120719 Hermansky-Pudlak syndrome 3 homolog (human) Hps3 310288 NM_001107664 0006996 // organelle organization // not recorded /// 0043473 // pigmentation // not recorded 0005737 // cytoplasm // not recorded 1379444_at BF283694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283694 /DB_XREF=gi:11214764 /DB_XREF=EST448285 /CLONE=RGIEF56 /FEA=EST /CNT=6 /TID=Rn.44024.1 /TIER=ConsEnd /STK=2 /UG=Rn.44024 /UG_TITLE=ESTs BF283694 1379445_at BF283378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283378 /DB_XREF=gi:11214448 /DB_XREF=EST447969 /CLONE=RGIEB21 /FEA=EST /CNT=6 /TID=Rn.28621.1 /TIER=ConsEnd /STK=2 /UG=Rn.28621 /UG_TITLE=ESTs BF283378 1379446_at BF282187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282187 /DB_XREF=gi:11213257 /DB_XREF=EST446778 /CLONE=RGIDF39 /FEA=EST /CNT=6 /TID=Rn.8743.1 /TIER=ConsEnd /STK=2 /UG=Rn.8743 /UG_TITLE=ESTs BF282187 1379447_at AW526204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526204 /DB_XREF=gi:7168589 /DB_XREF=UI-R-BO1-aju-d-01-0-UI.s1 /CLONE=UI-R-BO1-aju-d-01-0-UI /FEA=EST /CNT=6 /TID=Rn.49082.1 /TIER=ConsEnd /STK=2 /UG=Rn.49082 /UG_TITLE=ESTs AW526204 hyperpolarization-activated cyclic nucleotide-gated potassium channel 3 Hcn3 114245 NM_053685 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030552 // cAMP binding // inferred from electronic annotation 1379448_at BE110883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110883 /DB_XREF=gi:8502988 /DB_XREF=UI-R-BJ1-aux-b-01-0-UI.s1 /CLONE=UI-R-BJ1-aux-b-01-0-UI /FEA=EST /CNT=6 /TID=Rn.33566.1 /TIER=ConsEnd /STK=2 /UG=Rn.33566 /UG_TITLE=ESTs, Moderately similar to TTK MOUSE DUAL SPECIFICITY PROTEIN KINASE TTK (M.musculus) BE110883 Ttk protein kinase Ttk 315852 NM_001108172 0006468 // protein phosphorylation // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1379449_at BG670920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670920 /DB_XREF=gi:13893019 /DB_XREF=DRNBIF02 /CLONE=DRNBIF02 /FEA=EST /CNT=6 /TID=Rn.17144.1 /TIER=ConsEnd /STK=2 /UG=Rn.17144 /UG_TITLE=ESTs BG670920 RB1-inducible coiled-coil 1 Rb1cc1 312927 NM_001107901 0001889 // liver development // not recorded /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0007254 // JNK cascade // not recorded /// 0007507 // heart development // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0045793 // positive regulation of cell size // not recorded 0005634 // nucleus // not recorded /// 0070969 // ULK1-ATG13-FIP200 complex // not recorded 0005515 // protein binding // not recorded 1379450_at BM383195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383195 /DB_XREF=gi:18183248 /DB_XREF=UI-R-DS0-cjd-f-03-0-UI.s1 /CLONE=UI-R-DS0-cjd-f-03-0-UI /FEA=EST /CNT=6 /TID=Rn.25049.1 /TIER=ConsEnd /STK=2 /UG=Rn.25049 /UG_TITLE=ESTs BM383195 CTTNBP2 N-terminal like Cttnbp2nl 310760 NM_001107712 0015629 // actin cytoskeleton // not recorded 0005515 // protein binding // not recorded 1379451_at AI549081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549081 /DB_XREF=gi:4466569 /DB_XREF=UI-R-C3-tq-c-12-0-UI.s1 /CLONE=UI-R-C3-tq-c-12-0-UI /FEA=EST /CNT=6 /TID=Rn.43678.1 /TIER=ConsEnd /STK=2 /UG=Rn.43678 /UG_TITLE=ESTs AI549081 1379452_at AI411492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411492 /DB_XREF=gi:4254996 /DB_XREF=EST239786 /CLONE=RKIEL47 /FEA=EST /CNT=6 /TID=Rn.19800.1 /TIER=ConsEnd /STK=2 /UG=Rn.19800 /UG_TITLE=ESTs AI411492 growth arrest-specific 2 Gas2 499156 NM_001127504 0007050 // cell cycle arrest // inferred from electronic annotation 1379453_a_at AI072423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072423 /DB_XREF=gi:3398617 /DB_XREF=UI-R-C2-nk-a-03-0-UI.s1 /CLONE=UI-R-C2-nk-a-03-0-UI /FEA=EST /CNT=6 /TID=Rn.19944.1 /TIER=ConsEnd /STK=2 /UG=Rn.19944 /UG_TITLE=ESTs AI072423 1379454_at AI072423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072423 /DB_XREF=gi:3398617 /DB_XREF=UI-R-C2-nk-a-03-0-UI.s1 /CLONE=UI-R-C2-nk-a-03-0-UI /FEA=EST /CNT=6 /TID=Rn.19944.1 /TIER=ConsEnd /STK=2 /UG=Rn.19944 /UG_TITLE=ESTs AI072423 1379455_at AI070014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070014 /DB_XREF=gi:3396265 /DB_XREF=UI-R-C1-lp-h-02-0-UI.s1 /CLONE=UI-R-C1-lp-h-02-0-UI /FEA=EST /CNT=6 /TID=Rn.25017.1 /TIER=ConsEnd /STK=2 /UG=Rn.25017 /UG_TITLE=ESTs AI070014 Mastermind like 2 (Drosophila) Maml2 689844 XM_001072241 /// XM_002726984 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007219 // Notch signaling pathway // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded 1379456_at AA957383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957383 /DB_XREF=gi:4277273 /DB_XREF=UI-R-E1-fu-a-10-0-UI.s1 /CLONE=UI-R-E1-fu-a-10-0-UI /FEA=EST /CNT=6 /TID=Rn.9269.1 /TIER=ConsEnd /STK=2 /UG=Rn.9269 /UG_TITLE=ESTs AA957383 mitochondrial carrier triple repeat 1 Mcart1 313241 NM_001024785 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1379457_at AI013407 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013407 /DB_XREF=gi:3227463 /DB_XREF=EST208082 /CLONE=RSPBL09 /FEA=EST /CNT=6 /TID=Rn.23035.1 /TIER=ConsEnd /STK=2 /UG=Rn.23035 /UG_TITLE=ESTs, Highly similar to NEDD1 PROTEIN (M.musculus) AI013407 neural precursor cell expressed, developmentally down-regulated 1 Nedd1 299730 NM_001106779 0000242 // pericentriolar material // not recorded /// 0000922 // spindle pole // not recorded /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // not recorded /// 0005814 // centriole // not recorded /// 0005829 // cytosol // not recorded /// 0005932 // microtubule basal body // not recorded /// 0045177 // apical part of cell // not recorded 1379458_at AW533900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533900 /DB_XREF=gi:7176361 /DB_XREF=UI-R-C4-alr-a-09-0-UI.s1 /CLONE=UI-R-C4-alr-a-09-0-UI /FEA=EST /CNT=6 /TID=Rn.39343.1 /TIER=ConsEnd /STK=2 /UG=Rn.39343 /UG_TITLE=ESTs AW533900 kelch-like 14 (Drosophila) Klhl14 364823 NM_001108885 0005515 // protein binding // inferred from electronic annotation 1379459_at BI301276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301276 /DB_XREF=gi:14977556 /DB_XREF=UI-R-DK0-cek-h-01-0-UI.s2 /CLONE=UI-R-DK0-cek-h-01-0-UI /FEA=EST /CNT=6 /TID=Rn.33080.1 /TIER=ConsEnd /STK=2 /UG=Rn.33080 /UG_TITLE=ESTs, Moderately similar to JC7284 phospholipase A2 (H.sapiens) BI301276 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation 1379460_at BF387898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387898 /DB_XREF=gi:11372722 /DB_XREF=UI-R-CA1-bbw-a-08-0-UI.s1 /CLONE=UI-R-CA1-bbw-a-08-0-UI /FEA=EST /CNT=6 /TID=Rn.19477.1 /TIER=ConsEnd /STK=2 /UG=Rn.19477 /UG_TITLE=ESTs BF387898 1379461_at BE120147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120147 /DB_XREF=gi:8512252 /DB_XREF=UI-R-CA0-bap-b-05-0-UI.s1 /CLONE=UI-R-CA0-bap-b-05-0-UI /FEA=EST /CNT=5 /TID=Rn.51533.1 /TIER=ConsEnd /STK=2 /UG=Rn.51533 /UG_TITLE=ESTs BE120147 zinc finger protein 445 Zfp445 301076 NM_001191802 /// XM_001078410 /// XM_236726 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379462_at BM389136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389136 /DB_XREF=gi:18189189 /DB_XREF=UI-R-DZ0-cko-g-21-0-UI.s1 /CLONE=UI-R-DZ0-cko-g-21-0-UI /FEA=EST /CNT=5 /TID=Rn.55276.1 /TIER=ConsEnd /STK=2 /UG=Rn.55276 /UG_TITLE=ESTs BM389136 kinase suppressor of ras 1 Ksr1 360573 NM_001108284 0006468 // protein phosphorylation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0031434 // mitogen-activated protein kinase kinase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1379463_at AW525176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525176 /DB_XREF=gi:7167561 /DB_XREF=UI-R-BJ0p-aio-f-08-0-UI.s1 /CLONE=UI-R-BJ0p-aio-f-08-0-UI /FEA=EST /CNT=5 /TID=Rn.33937.1 /TIER=ConsEnd /STK=2 /UG=Rn.33937 /UG_TITLE=ESTs AW525176 filamin A interacting protein 1 Filip1 246776 NM_145682 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 1379464_at AI233253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233253 /DB_XREF=gi:4135847 /DB_XREF=EST229941 /CLONE=RKIDC75 /FEA=EST /CNT=5 /TID=Rn.55074.1 /TIER=ConsEnd /STK=2 /UG=Rn.55074 /UG_TITLE=ESTs AI233253 1379465_at AW527596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527596 /DB_XREF=gi:7170010 /DB_XREF=UI-R-BT1-ajz-a-12-0-UI.s1 /CLONE=UI-R-BT1-ajz-a-12-0-UI /FEA=EST /CNT=5 /TID=Rn.44069.1 /TIER=ConsEnd /STK=2 /UG=Rn.44069 /UG_TITLE=ESTs AW527596 hypothetical LOC311134 LOC311134 311134 XR_005532 /// XR_085788 1379466_at AW528261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528261 /DB_XREF=gi:7170675 /DB_XREF=UI-R-BT1-ajw-e-05-0-UI.s1 /CLONE=UI-R-BT1-ajw-e-05-0-UI /FEA=EST /CNT=5 /TID=Rn.48607.1 /TIER=ConsEnd /STK=2 /UG=Rn.48607 /UG_TITLE=ESTs AW528261 1379467_at BF284065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284065 /DB_XREF=gi:11215135 /DB_XREF=EST448656 /CLONE=RGIEK52 /FEA=EST /CNT=5 /TID=Rn.24761.1 /TIER=ConsEnd /STK=2 /UG=Rn.24761 /UG_TITLE=ESTs BF284065 1379468_at BI281734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281734 /DB_XREF=gi:14931782 /DB_XREF=UI-R-CT0s-cav-h-04-0-UI.s1 /CLONE=UI-R-CT0s-cav-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.28677.1 /TIER=ConsEnd /STK=2 /UG=Rn.28677 /UG_TITLE=ESTs BI281734 1379469_at AA955760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955760 /DB_XREF=gi:4238155 /DB_XREF=UI-R-E1-fg-f-11-0-UI.s1 /CLONE=UI-R-E1-fg-f-11-0-UI /FEA=EST /CNT=5 /TID=Rn.23112.1 /TIER=ConsEnd /STK=2 /UG=Rn.23112 /UG_TITLE=ESTs, Weakly similar to LIS1 MOUSE PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB ALPHA SUBUNIT (R.norvegicus) AA955760 transducin (beta)-like 1 X-linked Tbl1x 302711 NM_001106964 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043627 // response to estrogen stimulus // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // not recorded /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045444 // fat cell differentiation // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048545 // response to steroid hormone stimulus // not recorded /// 0048545 // response to steroid hormone stimulus // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005876 // spindle microtubule // not recorded /// 0017053 // transcriptional repressor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008013 // beta-catenin binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0019904 // protein domain specific binding // not recorded /// 0042393 // histone binding // not recorded 1379470_at AI412408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412408 /DB_XREF=gi:4255912 /DB_XREF=EST240707 /CLONE=RBRDU38 /FEA=EST /CNT=5 /TID=Rn.24370.1 /TIER=ConsEnd /STK=2 /UG=Rn.24370 /UG_TITLE=ESTs AI412408 1379471_at BI275767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275767 /DB_XREF=gi:14920003 /DB_XREF=UI-R-CX0-bxg-d-07-0-UI.s1 /CLONE=UI-R-CX0-bxg-d-07-0-UI /FEA=EST /CNT=5 /TID=Rn.17714.1 /TIER=ConsEnd /STK=2 /UG=Rn.17714 /UG_TITLE=ESTs BI275767 ubiquitin-like modifier activating enzyme 6 Uba6 305268 NM_001107213 0006464 // protein modification process // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded 0005737 // cytoplasm // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008641 // small protein activating enzyme activity // inferred from electronic annotation /// 0019780 // FAT10 activating enzyme activity // not recorded 1379472_at AI232666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232666 /DB_XREF=gi:3816546 /DB_XREF=EST229354 /CLONE=RKICE88 /FEA=EST /CNT=5 /TID=Rn.22886.1 /TIER=ConsEnd /STK=2 /UG=Rn.22886 /UG_TITLE=ESTs, Weakly similar to NADE DROME PUTATIVE GLUTAMINE-DEPENDENT NAD(+) SYNTHETASE (D.melanogaster) AI232666 NAD synthetase 1 Nadsyn1 353255 NM_181480 0006807 // nitrogen compound metabolic process // inferred from electronic annotation /// 0009435 // NAD biosynthetic process // inferred from electronic annotation /// 0019674 // NAD metabolic process // not recorded 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003952 // NAD+ synthase (glutamine-hydrolyzing) activity // inferred from electronic annotation /// 0003952 // NAD+ synthase (glutamine-hydrolyzing) activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1379473_at BI284815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284815 /DB_XREF=gi:14937833 /DB_XREF=UI-R-CX0s-ccs-e-12-0-UI.s1 /CLONE=UI-R-CX0s-ccs-e-12-0-UI /FEA=EST /CNT=5 /TID=Rn.44856.1 /TIER=ConsEnd /STK=2 /UG=Rn.44856 /UG_TITLE=ESTs BI284815 La ribonucleoprotein domain family, member 1B Larp1b 310348 NM_001014036 0006605 // protein targeting // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0030318 // melanocyte differentiation // inferred from electronic annotation /// 0032400 // melanosome localization // inferred from electronic annotation /// 0043473 // pigmentation // inferred from electronic annotation 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017022 // myosin binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from electronic annotation /// 0031489 // myosin V binding // inferred from electronic annotation /// 0051010 // microtubule plus-end binding // inferred from electronic annotation 1379474_at AW526574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526574 /DB_XREF=gi:7168988 /DB_XREF=UI-R-BO1-ajc-f-04-0-UI.s1 /CLONE=UI-R-BO1-ajc-f-04-0-UI /FEA=EST /CNT=5 /TID=Rn.46242.1 /TIER=ConsEnd /STK=2 /UG=Rn.46242 /UG_TITLE=ESTs AW526574 1379475_at BF396403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396403 /DB_XREF=gi:11381375 /DB_XREF=UI-R-BS2-bdx-f-12-0-UI.s1 /CLONE=UI-R-BS2-bdx-f-12-0-UI /FEA=EST /CNT=5 /TID=Rn.44030.1 /TIER=ConsEnd /STK=2 /UG=Rn.44030 /UG_TITLE=ESTs BF396403 similar to RIKEN cDNA 2210009G21 RGD1563120 499895 XM_001081289 /// XM_575241 0005515 // protein binding // not recorded 1379476_at AA963457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963457 /DB_XREF=gi:4278360 /DB_XREF=UI-R-E1-gj-f-06-0-UI.s1 /CLONE=UI-R-E1-gj-f-06-0-UI /FEA=EST /CNT=5 /TID=Rn.11561.1 /TIER=ConsEnd /STK=2 /UG=Rn.11561 /UG_TITLE=ESTs, Weakly similar to T23985 hypothetical protein R06F6.5b - Caenorhabditis elegans (C.elegans) AA963457 nucleoporin 35 Nup35 295692 NM_001004229 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from electronic annotation /// 0046930 // pore complex // inferred from electronic annotation 0015288 // porin activity // inferred from electronic annotation 1379477_at AI555261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555261 /DB_XREF=gi:4487624 /DB_XREF=UI-R-C2p-qv-f-09-0-UI.s1 /CLONE=UI-R-C2p-qv-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.35415.1 /TIER=ConsEnd /STK=2 /UG=Rn.35415 /UG_TITLE=ESTs AI555261 1379478_at BE120195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120195 /DB_XREF=gi:8512300 /DB_XREF=UI-R-CA0-bap-f-08-0-UI.s1 /CLONE=UI-R-CA0-bap-f-08-0-UI /FEA=EST /CNT=5 /TID=Rn.53479.1 /TIER=ConsEnd /STK=2 /UG=Rn.53479 /UG_TITLE=ESTs BE120195 Ovo-like 1(Drosophila) Ovol1 309164 NM_001107572 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000239 // pachytene // not recorded /// 0007283 // spermatogenesis // not recorded /// 0007498 // mesoderm development // not recorded /// 0008544 // epidermis development // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1379479_at AA859926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859926 /DB_XREF=gi:4230462 /DB_XREF=UI-R-E0-cg-c-08-0-UI.s1 /CLONE=UI-R-E0-cg-c-08-0-UI /FEA=EST /CNT=5 /TID=Rn.22652.1 /TIER=ConsEnd /STK=2 /UG=Rn.22652 /UG_TITLE=ESTs AA859926 kinesin family member 4 Kif4 84393 XM_001058828 /// XM_002727577 /// XM_002730256 /// XM_343797 0007018 // microtubule-based movement // inferred from electronic annotation 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1379480_at BG380938 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380938 /DB_XREF=gi:13305375 /DB_XREF=UI-R-CT0-buc-g-07-0-UI.s1 /CLONE=UI-R-CT0-buc-g-07-0-UI /FEA=EST /CNT=5 /TID=Rn.52190.1 /TIER=ConsEnd /STK=2 /UG=Rn.52190 /UG_TITLE=ESTs, Weakly similar to JC6124 diacylglycerol kinase (EC 2.7.1.107) IV - rat (R.norvegicus) BG380938 diacylglycerol kinase, iota Dgki 688705 NM_198782 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0032317 // regulation of Rap GTPase activity // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0051789 // response to protein stimulus // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0032045 // guanyl-nucleotide exchange factor complex // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0004143 // diacylglycerol kinase activity // inferred from direct assay /// 0004143 // diacylglycerol kinase activity // not recorded /// 0004143 // diacylglycerol kinase activity // inferred from electronic annotation /// 0005095 // GTPase inhibitor activity // not recorded /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0017016 // Ras GTPase binding // not recorded 1379481_at AW525563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525563 /DB_XREF=gi:7167948 /DB_XREF=UI-R-BJ0p-ain-b-02-0-UI.s1 /CLONE=UI-R-BJ0p-ain-b-02-0-UI /FEA=EST /CNT=5 /TID=Rn.64828.1 /TIER=ConsEnd /STK=2 /UG=Rn.64828 /UG_TITLE=ESTs, Weakly similar to SFR2_MOUSE Splicing factor, arginineserine-rich 2 (Splicing factor SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (M.musculus) AW525563 poly(A) binding protein, nuclear 1 Pabpn1 116697 NM_001135008 0008380 // RNA splicing // not recorded /// 0016973 // poly(A)+ mRNA export from nucleus // inferred from electronic annotation /// 0016973 // poly(A)+ mRNA export from nucleus // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379482_at BI283829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283829 /DB_XREF=gi:14935957 /DB_XREF=UI-R-CX0s-ccx-b-11-0-UI.s1 /CLONE=UI-R-CX0s-ccx-b-11-0-UI /FEA=EST /CNT=5 /TID=Rn.24743.1 /TIER=ConsEnd /STK=2 /UG=Rn.24743 /UG_TITLE=ESTs BI283829 transmembrane 6 superfamily member 1 Tm6sf1 361600 NM_001108490 0016021 // integral to membrane // inferred from electronic annotation 1379483_at AI548256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548256 /DB_XREF=gi:4465744 /DB_XREF=UI-R-C3-ti-d-08-0-UI.s1 /CLONE=UI-R-C3-ti-d-08-0-UI /FEA=EST /CNT=5 /TID=Rn.21542.1 /TIER=ConsEnd /STK=2 /UG=Rn.21542 /UG_TITLE=ESTs AI548256 Basic helix-loop-helix family, member e40 Bhlhe40 79431 NM_053328 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007399 // nervous system development // non-traceable author statement /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0007623 // circadian rhythm // not recorded /// 0009416 // response to light stimulus // inferred from electronic annotation /// 0009416 // response to light stimulus // not recorded /// 0009649 // entrainment of circadian clock // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0048168 // regulation of neuronal synaptic plasticity // inferred from expression pattern /// 0048168 // regulation of neuronal synaptic plasticity // non-traceable author statement 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // inferred from mutant phenotype /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1379484_at AA899459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899459 /DB_XREF=gi:4231957 /DB_XREF=UI-R-E0-de-a-02-0-UI.s1 /CLONE=UI-R-E0-de-a-02-0-UI /FEA=EST /CNT=5 /TID=Rn.14935.1 /TIER=ConsEnd /STK=2 /UG=Rn.14935 /UG_TITLE=ESTs AA899459 apoptosis, caspase activation inhibitor Aven 311299 NM_001107757 0006916 // anti-apoptosis // not recorded 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // not recorded 0005515 // protein binding // not recorded 1379485_at BF389640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389640 /DB_XREF=gi:11374475 /DB_XREF=UI-R-BS2-bdn-a-09-0-UI.s1 /CLONE=UI-R-BS2-bdn-a-09-0-UI /FEA=EST /CNT=5 /TID=Rn.58562.1 /TIER=ConsEnd /STK=2 /UG=Rn.58562 /UG_TITLE=ESTs, Highly similar to T42637 hypothetical protein 162K - mouse (M.musculus) BF389640 eukaryotic translation initiation factor 3, subunit A Eif3a 292148 NM_001047087 0001732 // formation of translation initiation complex // inferred from electronic annotation /// 0001732 // formation of translation initiation complex // not recorded /// 0001732 // formation of translation initiation complex // inferred from sequence or structural similarity /// 0006412 // translation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from electronic annotation /// 0005852 // eukaryotic translation initiation factor 3 complex // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from sequence or structural similarity 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003743 // translation initiation factor activity // not recorded /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379486_at AA860029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA860029 /DB_XREF=gi:4230590 /DB_XREF=UI-R-E0-bz-e-05-0-UI.s2 /CLONE=UI-R-E0-bz-e-05-0-UI /FEA=EST /CNT=5 /TID=Rn.881.1 /TIER=ConsEnd /STK=2 /UG=Rn.881 /UG_TITLE=ESTs AA860029 1379487_at BF287099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287099 /DB_XREF=gi:11218169 /DB_XREF=EST451690 /CLONE=RGIFZ03 /FEA=EST /CNT=5 /TID=Rn.48116.1 /TIER=ConsEnd /STK=2 /UG=Rn.48116 /UG_TITLE=ESTs BF287099 1379488_at BI274525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274525 /DB_XREF=gi:14885512 /DB_XREF=UI-R-CW0-bwj-h-03-0-UI.s1 /CLONE=UI-R-CW0-bwj-h-03-0-UI /FEA=EST /CNT=5 /TID=Rn.19574.1 /TIER=ConsEnd /STK=2 /UG=Rn.19574 /UG_TITLE=ESTs, Weakly similar to YG5I_YEAST Hypothetical 29.9 kDa protein in APL6-MES1 intergenic region (S.cerevisiae) BI274525 TP53 regulating kinase Trp53rk 362272 NM_001108606 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0016020 // membrane // inferred from electronic annotation 0002039 // p53 binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1379489_at BI286796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286796 /DB_XREF=gi:14941786 /DB_XREF=UI-R-CT0s-cam-a-02-0-UI.s1 /CLONE=UI-R-CT0s-cam-a-02-0-UI /FEA=EST /CNT=5 /TID=Rn.47138.1 /TIER=ConsEnd /STK=2 /UG=Rn.47138 /UG_TITLE=ESTs BI286796 1379490_at AI071599 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071599 /DB_XREF=gi:3397814 /DB_XREF=UI-R-C1-ky-h-12-0-UI.s2 /CLONE=UI-R-C1-ky-h-12-0-UI /FEA=EST /CNT=5 /TID=Rn.20572.1 /TIER=ConsEnd /STK=2 /UG=Rn.20572 /UG_TITLE=ESTs AI071599 1379491_at AW524012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524012 /DB_XREF=gi:7166362 /DB_XREF=UI-R-BJ0p-aik-b-07-0-UI.s1 /CLONE=UI-R-BJ0p-aik-b-07-0-UI /FEA=EST /CNT=5 /TID=Rn.45756.1 /TIER=ConsEnd /STK=2 /UG=Rn.45756 /UG_TITLE=ESTs AW524012 melanocortin 2 receptor accessory protein Mrap 288271 NM_001135834 0030819 // positive regulation of cAMP biosynthetic process // not recorded /// 0034394 // protein localization at cell surface // not recorded /// 0050873 // brown fat cell differentiation // not recorded 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // not recorded 0031780 // adrenocorticotropin hormone receptor binding // not recorded /// 0031781 // type 3 melanocortin receptor binding // not recorded /// 0031782 // type 4 melanocortin receptor binding // not recorded /// 0031783 // type 5 melanocortin receptor binding // not recorded /// 0070996 // type 1 melanocortin receptor binding // not recorded 1379492_at BE108374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108374 /DB_XREF=gi:8500479 /DB_XREF=UI-R-BS1-ayv-e-09-0-UI.s1 /CLONE=UI-R-BS1-ayv-e-09-0-UI /FEA=EST /CNT=5 /TID=Rn.40193.1 /TIER=ConsEnd /STK=2 /UG=Rn.40193 /UG_TITLE=ESTs BE108374 1379493_at AW916067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916067 /DB_XREF=gi:8081783 /DB_XREF=EST347371 /CLONE=RGIDF55 /FEA=EST /CNT=5 /TID=Rn.18291.1 /TIER=ConsEnd /STK=2 /UG=Rn.18291 /UG_TITLE=ESTs AW916067 1379494_at AI012029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012029 /DB_XREF=gi:3225861 /DB_XREF=EST206480 /CLONE=RPLAR79 /FEA=EST /CNT=5 /TID=Rn.17793.1 /TIER=ConsEnd /STK=2 /UG=Rn.17793 /UG_TITLE=ESTs AI012029 1379495_at BM388504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388504 /DB_XREF=gi:18188557 /DB_XREF=UI-R-DZ0-ckm-m-23-0-UI.s1 /CLONE=UI-R-DZ0-ckm-m-23-0-UI /FEA=EST /CNT=5 /TID=Rn.19776.1 /TIER=ConsEnd /STK=2 /UG=Rn.19776 /UG_TITLE=ESTs BM388504 1379496_at AI029460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029460 /DB_XREF=gi:4298718 /DB_XREF=UI-R-C0-ir-g-06-0-UI.s1 /CLONE=UI-R-C0-ir-g-06-0-UI /FEA=EST /CNT=5 /TID=Rn.31869.1 /TIER=ConsEnd /STK=2 /UG=Rn.31869 /UG_TITLE=ESTs AI029460 1379497_at BI275261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275261 /DB_XREF=gi:14886936 /DB_XREF=UI-R-CX0-bwr-d-11-0-UI.s1 /CLONE=UI-R-CX0-bwr-d-11-0-UI /FEA=EST /CNT=5 /TID=Rn.24928.1 /TIER=ConsEnd /STK=2 /UG=Rn.24928 /UG_TITLE=ESTs BI275261 1379498_at AW534136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534136 /DB_XREF=gi:7176550 /DB_XREF=UI-R-C4-alp-f-03-0-UI.s1 /CLONE=UI-R-C4-alp-f-03-0-UI /FEA=EST /CNT=5 /TID=Rn.48269.1 /TIER=ConsEnd /STK=2 /UG=Rn.48269 /UG_TITLE=ESTs AW534136 1379499_at BF282228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282228 /DB_XREF=gi:11213298 /DB_XREF=EST446819 /CLONE=RGIDF94 /FEA=EST /CNT=5 /TID=Rn.16681.1 /TIER=ConsEnd /STK=2 /UG=Rn.16681 /UG_TITLE=ESTs, Highly similar to TNFC MOUSE LYMPHOTOXIN-BETA (M.musculus) BF282228 lymphotoxin beta (TNF superfamily, member 3) Ltb 361795 NM_212507 0006955 // immune response // traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0010467 // gene expression // inferred from electronic annotation /// 0010467 // gene expression // not recorded /// 0043588 // skin development // inferred from electronic annotation /// 0043588 // skin development // not recorded /// 0045084 // positive regulation of interleukin-12 biosynthetic process // inferred from electronic annotation /// 0045084 // positive regulation of interleukin-12 biosynthetic process // not recorded /// 0048535 // lymph node development // inferred from electronic annotation /// 0048535 // lymph node development // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement 0005125 // cytokine activity // inferred from electronic annotation /// 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0043120 // tumor necrosis factor binding // traceable author statement 1379500_at AA860044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA860044 /DB_XREF=gi:4230605 /DB_XREF=UI-R-E0-bz-f-12-0-UI.s2 /CLONE=UI-R-E0-bz-f-12-0-UI /FEA=EST /CNT=5 /TID=Rn.893.1 /TIER=ConsEnd /STK=2 /UG=Rn.893 /UG_TITLE=ESTs AA860044 coiled-coil domain containing 117 Ccdc117 498404 NM_001017502 1379501_at AA963993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963993 /DB_XREF=gi:4278869 /DB_XREF=UI-R-C0-gs-g-03-0-UI.s1 /CLONE=UI-R-C0-gs-g-03-0-UI /FEA=EST /CNT=5 /TID=Rn.24544.1 /TIER=ConsEnd /STK=2 /UG=Rn.24544 /UG_TITLE=ESTs AA963993 1379502_at AA818107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818107 /DB_XREF=gi:4198622 /DB_XREF=UI-R-A0-am-f-07-0-UI.s1 /CLONE=UI-R-A0-am-f-07-0-UI /FEA=EST /CNT=5 /TID=Rn.16455.1 /TIER=ConsEnd /STK=2 /UG=Rn.16455 /UG_TITLE=ESTs AA818107 1379503_at AI171550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171550 /DB_XREF=gi:3711590 /DB_XREF=EST217515 /CLONE=RMUBM43 /FEA=EST /CNT=5 /TID=Rn.35349.1 /TIER=ConsEnd /STK=2 /UG=Rn.35349 /UG_TITLE=ESTs AI171550 1379504_at AW535155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535155 /DB_XREF=gi:7177569 /DB_XREF=UI-R-C4-als-h-01-0-UI.s1 /CLONE=UI-R-C4-als-h-01-0-UI /FEA=EST /CNT=5 /TID=Rn.44203.1 /TIER=ConsEnd /STK=2 /UG=Rn.44203 /UG_TITLE=ESTs AW535155 1379505_at BG380642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380642 /DB_XREF=gi:13305114 /DB_XREF=UI-R-CT0-btz-f-11-0-UI.s1 /CLONE=UI-R-CT0-btz-f-11-0-UI /FEA=EST /CNT=5 /TID=Rn.64182.1 /TIER=ConsEnd /STK=2 /UG=Rn.64182 /UG_TITLE=ESTs BG380642 Lix1 homolog (chicken) Lix1 292381 NM_001106214 1379506_at AA963909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963909 /DB_XREF=gi:4278314 /DB_XREF=UI-R-E1-ga-b-02-0-UI.s1 /CLONE=UI-R-E1-ga-b-02-0-UI /FEA=EST /CNT=5 /TID=Rn.12150.2 /TIER=ConsEnd /STK=2 /UG=Rn.12150 /UG_TITLE=ESTs AA963909 1379507_at AW917933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917933 /DB_XREF=gi:8083697 /DB_XREF=EST349237 /CLONE=RGIEK32 /FEA=EST /CNT=5 /TID=Rn.28424.1 /TIER=ConsEnd /STK=2 /UG=Rn.28424 /UG_TITLE=ESTs AW917933 1379508_at AI230366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230366 /DB_XREF=gi:3814253 /DB_XREF=EST227061 /CLONE=REMCV64 /FEA=EST /CNT=5 /TID=Rn.14893.1 /TIER=ConsEnd /STK=2 /UG=Rn.14893 /UG_TITLE=ESTs AI230366 1379509_at AI071235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071235 /DB_XREF=gi:3397450 /DB_XREF=UI-R-C2-nb-b-04-0-UI.s1 /CLONE=UI-R-C2-nb-b-04-0-UI /FEA=EST /CNT=5 /TID=Rn.20438.1 /TIER=ConsEnd /STK=2 /UG=Rn.20438 /UG_TITLE=ESTs AI071235 1379510_at BF546306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546306 /DB_XREF=gi:11637413 /DB_XREF=UI-R-C2p-rj-c-12-0-UI.r1 /CLONE=UI-R-C2p-rj-c-12-0-UI /FEA=EST /CNT=5 /TID=Rn.37950.1 /TIER=ConsEnd /STK=2 /UG=Rn.37950 /UG_TITLE=ESTs BF546306 1379511_at AA875275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875275 /DB_XREF=gi:4231154 /DB_XREF=UI-R-E0-ce-c-01-0-UI.s1 /CLONE=UI-R-E0-ce-c-01-0-UI /FEA=EST /CNT=5 /TID=Rn.35732.1 /TIER=ConsEnd /STK=2 /UG=Rn.35732 /UG_TITLE=ESTs AA875275 1379512_at BF396579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396579 /DB_XREF=gi:11381553 /DB_XREF=UI-R-BS2-bdz-g-04-0-UI.s1 /CLONE=UI-R-BS2-bdz-g-04-0-UI /FEA=EST /CNT=5 /TID=Rn.61685.1 /TIER=ConsEnd /STK=2 /UG=Rn.61685 /UG_TITLE=ESTs, Weakly similar to S21348 probable pol polyprotein-related protein 4 - rat (R.norvegicus) BF396579 1379513_at BE108949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108949 /DB_XREF=gi:8501054 /DB_XREF=UI-R-BS1-aza-c-05-0-UI.s1 /CLONE=UI-R-BS1-aza-c-05-0-UI /FEA=EST /CNT=5 /TID=Rn.37764.1 /TIER=ConsEnd /STK=2 /UG=Rn.37764 /UG_TITLE=ESTs BE108949 transmembrane protein 30B Tmem30b 314224 NM_001080380 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1379514_at AA926014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926014 /DB_XREF=gi:4237205 /DB_XREF=UI-R-A1-es-d-01-0-UI.s1 /CLONE=UI-R-A1-es-d-01-0-UI /FEA=EST /CNT=5 /TID=Rn.15638.1 /TIER=ConsEnd /STK=2 /UG=Rn.15638 /UG_TITLE=ESTs AA926014 1379515_at AW144664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144664 /DB_XREF=gi:6164563 /DB_XREF=EST295042 /CLONE=RGICA77 /FEA=EST /CNT=5 /TID=Rn.40489.1 /TIER=ConsEnd /STK=2 /UG=Rn.40489 /UG_TITLE=ESTs, Weakly similar to T21059 hypothetical protein F17C11.7 - Caenorhabditis elegans (C.elegans) AW144664 phosphatidylinositol glycan anchor biosynthesis, class T Pigt 296360 NM_001106540 0016255 // attachment of GPI anchor to protein // not recorded /// 0030182 // neuron differentiation // not recorded /// 0051402 // neuron apoptosis // not recorded 0005737 // cytoplasm // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0042765 // GPI-anchor transamidase complex // inferred from electronic annotation /// 0042765 // GPI-anchor transamidase complex // not recorded 0003923 // GPI-anchor transamidase activity // not recorded /// 0005515 // protein binding // not recorded 1379516_at AW253651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253651 /DB_XREF=gi:6597242 /DB_XREF=UI-R-BJ0-aer-f-06-0-UI.s1 /CLONE=UI-R-BJ0-aer-f-06-0-UI /FEA=EST /CNT=5 /TID=Rn.21034.1 /TIER=ConsEnd /STK=2 /UG=Rn.21034 /UG_TITLE=ESTs AW253651 similar to RIKEN cDNA 2310022B05 RGD1559896 498967 NM_001109134 1379517_at AI716595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716595 /DB_XREF=gi:5033851 /DB_XREF=UI-R-Y0-acc-a-03-0-UI.s1 /CLONE=UI-R-Y0-acc-a-03-0-UI /FEA=EST /CNT=5 /TID=Rn.41526.1 /TIER=ConsEnd /STK=2 /UG=Rn.41526 /UG_TITLE=ESTs AI716595 1379518_at AI029126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029126 /DB_XREF=gi:4296407 /DB_XREF=UI-R-C0-ip-d-08-0-UI.s1 /CLONE=UI-R-C0-ip-d-08-0-UI /FEA=EST /CNT=5 /TID=Rn.23481.1 /TIER=ConsEnd /STK=2 /UG=Rn.23481 /UG_TITLE=ESTs AI029126 1379519_at AI171230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171230 /DB_XREF=gi:3711270 /DB_XREF=EST217185 /CLONE=RMUBH86 /FEA=EST /CNT=5 /TID=Rn.24291.1 /TIER=ConsEnd /STK=2 /UG=Rn.24291 /UG_TITLE=ESTs AI171230 similar to hypothetical protein FLJ11193 RGD1306502 310158 NM_001107654 1379520_at BE103550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103550 /DB_XREF=gi:8495650 /DB_XREF=UI-R-BX0-ard-e-11-0-UI.s1 /CLONE=UI-R-BX0-ard-e-11-0-UI /FEA=EST /CNT=5 /TID=Rn.43783.1 /TIER=ConsEnd /STK=2 /UG=Rn.43783 /UG_TITLE=ESTs BE103550 1379521_at AW525817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525817 /DB_XREF=gi:7168202 /DB_XREF=UI-R-BJ0p-ais-b-08-0-UI.s1 /CLONE=UI-R-BJ0p-ais-b-08-0-UI /FEA=EST /CNT=5 /TID=Rn.45394.1 /TIER=ConsEnd /STK=2 /UG=Rn.45394 /UG_TITLE=ESTs, Moderately similar to NT56_HUMAN NOT56-LIKE PROTEIN (H.sapiens) AW525817 asparagine-linked glycosylation 3, alpha-1,3- mannosyltransferase homolog (S. cerevisiae) Alg3 287983 NM_001142363 /// NR_024535 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0000033 // alpha-1,3-mannosyltransferase activity // inferred from electronic annotation /// 0000033 // alpha-1,3-mannosyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1379522_at AA956480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956480 /DB_XREF=gi:4238954 /DB_XREF=UI-R-E1-fk-e-04-0-UI.s1 /CLONE=UI-R-E1-fk-e-04-0-UI /FEA=EST /CNT=5 /TID=Rn.8996.1 /TIER=ConsEnd /STK=2 /UG=Rn.8996 /UG_TITLE=ESTs AA956480 1379523_at AA818187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818187 /DB_XREF=gi:4198700 /DB_XREF=UI-R-A0-ai-f-11-0-UI.s1 /CLONE=UI-R-A0-ai-f-11-0-UI /FEA=EST /CNT=5 /TID=Rn.14975.1 /TIER=ConsEnd /STK=2 /UG=Rn.14975 /UG_TITLE=ESTs AA818187 1379524_at AI136576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136576 /DB_XREF=gi:3637353 /DB_XREF=UI-R-C2p-nw-h-01-0-UI.s1 /CLONE=UI-R-C2p-nw-h-01-0-UI /FEA=EST /CNT=5 /TID=Rn.29803.1 /TIER=ConsEnd /STK=2 /UG=Rn.29803 /UG_TITLE=ESTs, Weakly similar to DYNEIN INTERMEDIATE CHAIN 1, CYTOSOLIC (R.norvegicus) AI136576 WD repeat domain 34 Wdr34 296618 NM_001005542 1379525_at BF559514 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559514 /DB_XREF=gi:11669244 /DB_XREF=UI-R-E0-cn-f-01-0-UI.r1 /CLONE=UI-R-E0-cn-f-01-0-UI /FEA=EST /CNT=5 /TID=Rn.34345.2 /TIER=ConsEnd /STK=2 /UG=Rn.34345 /UG_TITLE=ESTs BF559514 cardiolipin synthase 1 Crls1 366196 NM_001014258 0008654 // phospholipid biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016780 // phosphotransferase activity, for other substituted phosphate groups // inferred from electronic annotation 1379526_at BG374506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374506 /DB_XREF=gi:13298978 /DB_XREF=UI-R-CV1-bsr-c-01-0-UI.s1 /CLONE=UI-R-CV1-bsr-c-01-0-UI /FEA=EST /CNT=5 /TID=Rn.22877.1 /TIER=ConsEnd /STK=2 /UG=Rn.22877 /UG_TITLE=ESTs BG374506 1379527_at AI502952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502952 /DB_XREF=gi:4400803 /DB_XREF=UI-R-C1-ku-h-04-0-UI.s1 /CLONE=UI-R-C1-ku-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.17165.1 /TIER=ConsEnd /STK=2 /UG=Rn.17165 /UG_TITLE=ESTs, Weakly similar to T13154 polycomb protein enhancer - fruit fly (D.melanogaster) AI502952 enhancer of polycomb homolog 1 (Drosophila) /// enhancer of polycomb homolog 1 Epc1 /// LOC100362678 100362678 /// 307042 NM_001100972 /// XM_002725273 /// XM_002728490 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0043967 // histone H4 acetylation // not recorded /// 0043968 // histone H2A acetylation // not recorded /// 0045814 // negative regulation of gene expression, epigenetic // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0031965 // nuclear membrane // not recorded /// 0032777 // Piccolo NuA4 histone acetyltransferase complex // not recorded /// 0035267 // NuA4 histone acetyltransferase complex // not recorded 0004402 // histone acetyltransferase activity // not recorded /// 0016564 // transcription repressor activity // not recorded 1379528_at BI284017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284017 /DB_XREF=gi:14936294 /DB_XREF=UI-R-DA0-bzd-c-09-0-UI.s1 /CLONE=UI-R-DA0-bzd-c-09-0-UI /FEA=EST /CNT=5 /TID=Rn.20639.1 /TIER=ConsEnd /STK=2 /UG=Rn.20639 /UG_TITLE=ESTs BI284017 1379529_at BE121400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121400 /DB_XREF=gi:8513505 /DB_XREF=UI-R-CA0-bax-d-10-0-UI.s1 /CLONE=UI-R-CA0-bax-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.25395.1 /TIER=ConsEnd /STK=2 /UG=Rn.25395 /UG_TITLE=ESTs, Weakly similar to HG17 RAT NONHISTONE CHROMOSOMAL PROTEIN HMG-17 (R.norvegicus) BE121400 nucleosomal binding protein 1 Nsbp1 681284 NM_001134706 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded 1379530_at AA964658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964658 /DB_XREF=gi:4279532 /DB_XREF=UI-R-C0-ha-c-11-0-UI.s1 /CLONE=UI-R-C0-ha-c-11-0-UI /FEA=EST /CNT=5 /TID=Rn.9198.1 /TIER=ConsEnd /STK=2 /UG=Rn.9198 /UG_TITLE=ESTs AA964658 1379531_at BF283384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283384 /DB_XREF=gi:11214454 /DB_XREF=EST447975 /CLONE=RGIEB28 /FEA=EST /CNT=5 /TID=Rn.43352.1 /TIER=ConsEnd /STK=2 /UG=Rn.43352 /UG_TITLE=ESTs BF283384 1379532_at AI385279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385279 /DB_XREF=gi:4198061 /DB_XREF=UI-R-C2-mw-b-12-0-UI.s2 /CLONE=UI-R-C2-mw-b-12-0-UI /FEA=EST /CNT=5 /TID=Rn.20578.1 /TIER=ConsEnd /STK=2 /UG=Rn.20578 /UG_TITLE=ESTs AI385279 1379533_at BF396653 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396653 /DB_XREF=gi:11381631 /DB_XREF=UI-R-BS2-bea-f-01-0-UI.s1 /CLONE=UI-R-BS2-bea-f-01-0-UI /FEA=EST /CNT=5 /TID=Rn.49014.1 /TIER=ConsEnd /STK=2 /UG=Rn.49014 /UG_TITLE=ESTs BF396653 1379534_at AI104922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104922 /DB_XREF=gi:3709152 /DB_XREF=EST214211 /CLONE=RHECL31 /FEA=EST /CNT=5 /TID=Rn.22465.1 /TIER=ConsEnd /STK=2 /UG=Rn.22465 /UG_TITLE=ESTs AI104922 1379535_at AI073064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073064 /DB_XREF=gi:3399258 /DB_XREF=UI-R-Y0-lx-e-04-0-UI.s1 /CLONE=UI-R-Y0-lx-e-04-0-UI /FEA=EST /CNT=5 /TID=Rn.21841.1 /TIER=ConsEnd /STK=2 /UG=Rn.21841 /UG_TITLE=ESTs AI073064 1379536_at BF547014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547014 /DB_XREF=gi:11638121 /DB_XREF=UI-R-C1-kj-h-06-0-UI.r1 /CLONE=UI-R-C1-kj-h-06-0-UI /FEA=EST /CNT=5 /TID=Rn.21422.1 /TIER=ConsEnd /STK=2 /UG=Rn.21422 /UG_TITLE=ESTs BF547014 Pleckstrin homology domain containing, family A member 6 Plekha6 360842 XM_001060716 /// XM_341118 0005515 // protein binding // inferred from electronic annotation 1379537_at AW251543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251543 /DB_XREF=gi:6595134 /DB_XREF=UI-R-BJ0-ado-d-06-0-UI.s1 /CLONE=UI-R-BJ0-ado-d-06-0-UI /FEA=EST /CNT=5 /TID=Rn.3209.1 /TIER=ConsEnd /STK=2 /UG=Rn.3209 /UG_TITLE=ESTs AW251543 raftlin family member 2 Rftn2 363231 XM_001066941 /// XM_343571 1379538_at BE104961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104961 /DB_XREF=gi:8497062 /DB_XREF=UI-R-BX0-arw-g-02-0-UI.s1 /CLONE=UI-R-BX0-arw-g-02-0-UI /FEA=EST /CNT=5 /TID=Rn.19524.1 /TIER=ConsEnd /STK=2 /UG=Rn.19524 /UG_TITLE=ESTs, Weakly similar to S26413 t-complex protein Tcp-10 - mouse (M.musculus) BE104961 centromere protein J Cenpj 305909 NM_001107265 0007099 // centriole replication // not recorded /// 0046785 // microtubule polymerization // not recorded 0005814 // centriole // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded /// 0015631 // tubulin binding // not recorded /// 0019904 // protein domain specific binding // not recorded 1379539_at AI137339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137339 /DB_XREF=gi:3638116 /DB_XREF=UI-R-C2p-og-b-08-0-UI.s1 /CLONE=UI-R-C2p-og-b-08-0-UI /FEA=EST /CNT=5 /TID=Rn.23762.1 /TIER=ConsEnd /STK=2 /UG=Rn.23762 /UG_TITLE=ESTs, Moderately similar to JC6307 homeobox protein Barx2 - mouse (M.musculus) AI137339 1379540_at BM383595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383595 /DB_XREF=gi:18183648 /DB_XREF=UI-R-DM1-cka-p-01-0-UI.s1 /CLONE=UI-R-DM1-cka-p-01-0-UI /FEA=EST /CNT=5 /TID=Rn.48452.1 /TIER=ConsEnd /STK=2 /UG=Rn.48452 /UG_TITLE=ESTs BM383595 1379541_at BE329099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329099 /DB_XREF=gi:9202875 /DB_XREF=hq36g10.x1 /CLONE=IMAGE:3121506 /FEA=EST /CNT=5 /TID=Rn.23302.1 /TIER=ConsEnd /STK=2 /UG=Rn.23302 /UG_TITLE=ESTs BE329099 1379542_at BF522334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522334 /DB_XREF=gi:11630301 /DB_XREF=UI-R-C2p-qq-a-02-0-UI.r1 /CLONE=UI-R-C2p-qq-a-02-0-UI /FEA=EST /CNT=5 /TID=Rn.14918.1 /TIER=ConsEnd /STK=2 /UG=Rn.14918 /UG_TITLE=ESTs, Highly similar to RUXF_HUMAN SMALL NUCLEAR RIBONUCLEOPROTEIN F (H.sapiens) BF522334 small nuclear ribonucleoprotein polypeptide F Snrpf 680737 NM_001126091 0000387 // spliceosomal snRNP assembly // not recorded /// 0006396 // RNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005681 // spliceosomal complex // not recorded /// 0005683 // U7 snRNP // not recorded /// 0005829 // cytosol // not recorded /// 0030532 // small nuclear ribonucleoprotein complex // not recorded 0003723 // RNA binding // not recorded /// 0005515 // protein binding // not recorded 1379543_at AA924568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924568 /DB_XREF=gi:4235759 /DB_XREF=UI-R-A1-dz-h-04-0-UI.s1 /CLONE=UI-R-A1-dz-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.23453.1 /TIER=ConsEnd /STK=2 /UG=Rn.23453 /UG_TITLE=ESTs AA924568 1379544_at AI146108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146108 /DB_XREF=gi:3667907 /DB_XREF=UI-R-BT0-qh-a-05-0-UI.s1 /CLONE=UI-R-BT0-qh-a-05-0-UI /FEA=EST /CNT=5 /TID=Rn.44004.1 /TIER=ConsEnd /STK=2 /UG=Rn.44004 /UG_TITLE=ESTs AI146108 1379545_at BG372752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372752 /DB_XREF=gi:13269289 /DB_XREF=UI-R-CV1-brt-c-04-0-UI.s1 /CLONE=UI-R-CV1-brt-c-04-0-UI /FEA=EST /CNT=5 /TID=Rn.64806.1 /TIER=ConsEnd /STK=2 /UG=Rn.64806 /UG_TITLE=ESTs BG372752 1379546_at AA875623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875623 /DB_XREF=gi:4231500 /DB_XREF=UI-R-E0-ct-e-04-0-UI.s1 /CLONE=UI-R-E0-ct-e-04-0-UI /FEA=EST /CNT=5 /TID=Rn.1280.2 /TIER=ConsEnd /STK=2 /UG=Rn.1280 /UG_TITLE=ESTs AA875623 1379547_at AA964652 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964652 /DB_XREF=gi:4279526 /DB_XREF=UI-R-C0-ha-c-05-0-UI.s1 /CLONE=UI-R-C0-ha-c-05-0-UI /FEA=EST /CNT=5 /TID=Rn.40178.1 /TIER=ConsEnd /STK=2 /UG=Rn.40178 /UG_TITLE=ESTs AA964652 1379548_at BF560252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF560252 /DB_XREF=gi:11669982 /DB_XREF=UI-R-E1-gh-h-04-0-UI.r1 /CLONE=UI-R-E1-gh-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.11878.2 /TIER=ConsEnd /STK=2 /UG=Rn.11878 /UG_TITLE=ESTs BF560252 1379549_at BI288184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288184 /DB_XREF=gi:14944519 /DB_XREF=UI-R-DK0-cdc-h-04-0-UI.s1 /CLONE=UI-R-DK0-cdc-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.44903.1 /TIER=ConsEnd /STK=2 /UG=Rn.44903 /UG_TITLE=ESTs BI288184 ring finger protein 165 Rnf165 307251 NM_001164505 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379550_a_at BF290483 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290483 /DB_XREF=gi:11221553 /DB_XREF=EST455074 /CLONE=RGIHW08 /FEA=EST /CNT=3 /TID=Rn.6665.2 /TIER=ConsEnd /STK=0 /UG=Rn.6665 /UG_TITLE=ESTs BF290483 GTF2I repeat domain containing 1 Gtf2ird1 246770 NM_001001504 0009790 // embryo development // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379551_at AI170351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170351 /DB_XREF=gi:3710391 /DB_XREF=EST216277 /CLONE=RLUCH25 /FEA=EST /CNT=5 /TID=Rn.41975.1 /TIER=ConsEnd /STK=2 /UG=Rn.41975 /UG_TITLE=ESTs AI170351 dihydrouridine synthase 4-like (S. cerevisiae) Dus4l 366593 NM_001135803 0008033 // tRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0017150 // tRNA dihydrouridine synthase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1379552_s_at AI535169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535169 /DB_XREF=gi:4449304 /DB_XREF=UI-R-C3-sq-d-06-0-UI.s1 /CLONE=UI-R-C3-sq-d-06-0-UI /FEA=EST /CNT=5 /TID=Rn.34765.1 /TIER=ConsEnd /STK=2 /UG=Rn.34765 /UG_TITLE=ESTs, Moderately similar to Rap2 interacting protein 8 (M.musculus) AI535169 Rap2 interacting protein Rap2ip 303569 NM_198758 0030828 // positive regulation of cGMP biosynthetic process // inferred from direct assay /// 0071445 // cellular response to protein stimulus // inferred from expression pattern 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0030250 // guanylate cyclase activator activity // inferred from direct assay /// 0051428 // peptide hormone receptor binding // inferred from physical interaction 1379553_s_at AI058678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058678 /DB_XREF=gi:3332455 /DB_XREF=UI-R-C1-kp-h-10-0-UI.s1 /CLONE=UI-R-C1-kp-h-10-0-UI /FEA=EST /CNT=5 /TID=Rn.22618.1 /TIER=ConsEnd /STK=2 /UG=Rn.22618 /UG_TITLE=ESTs, Weakly similar to PCB3_MOUSE POLY(RC)-BINDING PROTEIN 3 (ALPHA-CP3) (M.musculus) AI058678 neuro-oncological ventral antigen 2 Nova2 292681 XM_001075246 /// XM_002728713 0003723 // RNA binding // inferred from electronic annotation 1379554_at AW141639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141639 /DB_XREF=gi:6161451 /DB_XREF=EST291707 /CLONE=RGICB62 /FEA=EST /CNT=5 /TID=Rn.41990.1 /TIER=ConsEnd /STK=2 /UG=Rn.41990 /UG_TITLE=ESTs, Highly similar to 2A5E MOUSE SERINETHREONINE PROTEIN PHOSPHATASE 2A, 56 KDA REGULATORY SUBUNIT, EPSILON ISOFORM (M.musculus) AW141639 protein phosphatase 2, regulatory subunit B', epsilon isoform Ppp2r5e 299147 NM_001106740 0007165 // signal transduction // inferred from electronic annotation 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008601 // protein phosphatase type 2A regulator activity // inferred from electronic annotation 1379555_at AI233902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233902 /DB_XREF=gi:3817782 /DB_XREF=EST230590 /CLONE=RLUCS54 /FEA=EST /CNT=10 /TID=Rn.49292.1 /TIER=ConsEnd /STK=2 /UG=Rn.49292 /UG_TITLE=ESTs AI233902 1379556_a_at AI105210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105210 /DB_XREF=gi:4134327 /DB_XREF=EST214499 /CLONE=RKIBG96 /FEA=EST /CNT=7 /TID=Rn.54975.2 /TIER=ConsEnd /STK=2 /UG=Rn.54975 /UG_TITLE=ESTs, Highly similar to geranylgeranyl diphosphate synthase 1; GGPP synthase (Mus musculus) (M.musculus) AI105210 geranylgeranyl diphosphate synthase 1 Ggps1 291211 NM_001007626 0006720 // isoprenoid metabolic process // not recorded /// 0006720 // isoprenoid metabolic process // inferred from sequence or structural similarity /// 0006720 // isoprenoid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation 0005625 // soluble fraction // not recorded /// 0005625 // soluble fraction // inferred from sequence or structural similarity /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004161 // dimethylallyltranstransferase activity // inferred from electronic annotation /// 0004311 // farnesyltranstransferase activity // not recorded /// 0004311 // farnesyltranstransferase activity // inferred from sequence or structural similarity /// 0004311 // farnesyltranstransferase activity // inferred from electronic annotation /// 0004337 // geranyltranstransferase activity // inferred from electronic annotation /// 0004337 // geranyltranstransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379557_at BF409808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409808 /DB_XREF=gi:11397783 /DB_XREF=UI-R-CA1-bjr-a-07-0-UI.s1 /CLONE=UI-R-CA1-bjr-a-07-0-UI /FEA=EST /CNT=7 /TID=Rn.24775.1 /TIER=ConsEnd /STK=2 /UG=Rn.24775 /UG_TITLE=ESTs BF409808 parvin, gamma Parvg 689069 NM_001130583 0005515 // protein binding // not recorded 1379558_at AA957033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957033 /DB_XREF=gi:4239506 /DB_XREF=UI-R-E1-fs-f-09-0-UI.s1 /CLONE=UI-R-E1-fs-f-09-0-UI /FEA=EST /CNT=7 /TID=Rn.9167.1 /TIER=ConsEnd /STK=2 /UG=Rn.9167 /UG_TITLE=ESTs AA957033 similar to zinc finger protein 748 isoform 2 LOC680222 680222 XM_002725461 /// XM_002728447 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1379559_at BF400293 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400293 /DB_XREF=gi:11385304 /DB_XREF=UI-R-CA1-bjc-p-17-0-UI.s1 /CLONE=UI-R-CA1-bjc-p-17-0-UI /FEA=EST /CNT=6 /TID=Rn.21512.1 /TIER=ConsEnd /STK=2 /UG=Rn.21512 /UG_TITLE=ESTs BF400293 1379560_at BE099674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099674 /DB_XREF=gi:8491553 /DB_XREF=UI-R-BJ1-atk-a-05-0-UI.s1 /CLONE=UI-R-BJ1-atk-a-05-0-UI /FEA=EST /CNT=6 /TID=Rn.49228.1 /TIER=ConsEnd /STK=2 /UG=Rn.49228 /UG_TITLE=ESTs, Moderately similar to nuclear receptor-binding SET-domain protein 1 (Mus musculus) (M.musculus) BE099674 nuclear receptor binding SET domain protein 1 Nsd1 306764 NM_001107337 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001702 // gastrulation with mouth forming second // not recorded /// 0010452 // histone H3-K36 methylation // not recorded /// 0016571 // histone methylation // not recorded /// 0018022 // peptidyl-lysine methylation // not recorded /// 0034770 // histone H4-K20 methylation // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003682 // chromatin binding // not recorded /// 0003712 // transcription cofactor activity // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016922 // ligand-dependent nuclear receptor binding // not recorded /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0030331 // estrogen receptor binding // not recorded /// 0042054 // histone methyltransferase activity // not recorded /// 0042799 // histone methyltransferase activity (H4-K20 specific) // not recorded /// 0042974 // retinoic acid receptor binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // not recorded /// 0046966 // thyroid hormone receptor binding // not recorded /// 0046975 // histone methyltransferase activity (H3-K36 specific) // not recorded /// 0050681 // androgen receptor binding // not recorded 1379561_at AW433567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433567 /DB_XREF=gi:6964874 /DB_XREF=UI-R-BJ0p-aez-g-04-0-UI.s1 /CLONE=UI-R-BJ0p-aez-g-04-0-UI /FEA=EST /CNT=6 /TID=Rn.23188.1 /TIER=ConsEnd /STK=2 /UG=Rn.23188 /UG_TITLE=ESTs AW433567 ATPase family, AAA domain containing 1 Atad1 309532 NM_001035002 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1379562_at AA858498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858498 /DB_XREF=gi:4229831 /DB_XREF=UI-R-E0-bo-c-06-0-UI.s1 /CLONE=UI-R-E0-bo-c-06-0-UI /FEA=EST /CNT=6 /TID=Rn.43926.1 /TIER=ConsEnd /STK=2 /UG=Rn.43926 /UG_TITLE=ESTs AA858498 1379563_at AA998071 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998071 /DB_XREF=gi:4287312 /DB_XREF=UI-R-C0-id-e-02-0-UI.s1 /CLONE=UI-R-C0-id-e-02-0-UI /FEA=EST /CNT=6 /TID=Rn.17870.1 /TIER=ConsEnd /STK=2 /UG=Rn.17870 /UG_TITLE=ESTs, Highly similar to IRF5 MOUSE INTERFERON REGULATORY FACTOR 5 (M.musculus) AA998071 interferon regulatory factor 5 Irf5 296953 NM_001106586 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1379564_at AW528486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528486 /DB_XREF=gi:7170900 /DB_XREF=UI-R-BO1-ajl-h-10-0-UI.s1 /CLONE=UI-R-BO1-ajl-h-10-0-UI /FEA=EST /CNT=6 /TID=Rn.32562.1 /TIER=ConsEnd /STK=2 /UG=Rn.32562 /UG_TITLE=ESTs AW528486 1379565_at AA956791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956791 /DB_XREF=gi:4239265 /DB_XREF=UI-R-E1-fr-h-03-0-UI.s1 /CLONE=UI-R-E1-fr-h-03-0-UI /FEA=EST /CNT=6 /TID=Rn.23031.1 /TIER=ConsEnd /STK=2 /UG=Rn.23031 /UG_TITLE=ESTs AA956791 cAMP responsive element binding protein 3-like 2 Creb3l2 362339 NM_001012188 0002062 // chondrocyte differentiation // not recorded /// 0002062 // chondrocyte differentiation // inferred from sequence or structural similarity /// 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // not recorded /// 0006986 // response to unfolded protein // inferred from electronic annotation /// 0034976 // response to endoplasmic reticulum stress // not recorded /// 0034976 // response to endoplasmic reticulum stress // inferred from sequence or structural similarity /// 0034976 // response to endoplasmic reticulum stress // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0051216 // cartilage development // not recorded /// 0051216 // cartilage development // inferred from sequence or structural similarity /// 0051216 // cartilage development // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from sequence or structural similarity /// 0010843 // promoter binding // inferred from electronic annotation /// 0035497 // cAMP response element binding // inferred from electronic annotation /// 0035497 // cAMP response element binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1379566_at AW527929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527929 /DB_XREF=gi:7170343 /DB_XREF=UI-R-BT1-akb-g-07-0-UI.s1 /CLONE=UI-R-BT1-akb-g-07-0-UI /FEA=EST /CNT=6 /TID=Rn.46708.1 /TIER=ConsEnd /STK=2 /UG=Rn.46708 /UG_TITLE=ESTs AW527929 RNA binding motif protein 11 Rbm11 288321 NM_001105898 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1379567_at AI105643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105643 /DB_XREF=gi:3460863 /DB_XREF=351 /FEA=EST /CNT=6 /TID=Rn.26524.1 /TIER=ConsEnd /STK=2 /UG=Rn.26524 /UG_TITLE=ESTs, Moderately similar to T42707 hypothetical protein DKFZp586E041.1 (H.sapiens) AI105643 mediator complex subunit 13 Med13 303403 NM_001107035 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0030518 // steroid hormone receptor signaling pathway // not recorded /// 0030521 // androgen receptor signaling pathway // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0016592 // mediator complex // inferred from electronic annotation /// 0016592 // mediator complex // not recorded 0003712 // transcription cofactor activity // not recorded /// 0003713 // transcription coactivator activity // not recorded /// 0004872 // receptor activity // not recorded /// 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation /// 0016455 // RNA polymerase II transcription mediator activity // not recorded /// 0016563 // transcription activator activity // not recorded /// 0046966 // thyroid hormone receptor binding // not recorded 1379568_at AI009765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009765 /DB_XREF=gi:3223597 /DB_XREF=EST204216 /CLONE=RLUBO21 /FEA=EST /CNT=6 /TID=Rn.6175.1 /TIER=ConsEnd /STK=2 /UG=Rn.6175 /UG_TITLE=ESTs AI009765 interferon-induced protein with tetratricopeptide repeats 2 Ifit2 294091 NM_001024753 0035457 // cellular response to interferon-alpha // not recorded 0005488 // binding // inferred from electronic annotation 1379569_at AI113204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113204 /DB_XREF=gi:3513153 /DB_XREF=UI-R-C2p-np-g-05-0-UI.s1 /CLONE=UI-R-C2p-np-g-05-0-UI /FEA=EST /CNT=6 /TID=Rn.26948.1 /TIER=ConsEnd /STK=2 /UG=Rn.26948 /UG_TITLE=ESTs AI113204 1379570_at AI578255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578255 /DB_XREF=gi:4562631 /DB_XREF=UI-R-G0-ui-e-09-0-UI.s2 /CLONE=UI-R-G0-ui-e-09-0-UI /FEA=EST /CNT=6 /TID=Rn.50690.1 /TIER=ConsEnd /STK=2 /UG=Rn.50690 /UG_TITLE=ESTs, Highly similar to FBRL MOUSE FIBRILLARIN (M.musculus) AI578255 Fibrillarin-like 1 Fbll1 363563 NM_001108824 1379571_at AA819847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819847 /DB_XREF=gi:4228102 /DB_XREF=UI-R-A0-ap-c-03-0-UI.s1 /CLONE=UI-R-A0-ap-c-03-0-UI /FEA=EST /CNT=6 /TID=Rn.17389.1 /TIER=ConsEnd /STK=2 /UG=Rn.17389 /UG_TITLE=ESTs, Weakly similar to neural plakophilin-related arm-repeat protein (Mus musculus) (M.musculus) AA819847 0005488 // binding // inferred from electronic annotation 1379572_at AI406423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406423 /DB_XREF=gi:4249927 /DB_XREF=EST234709 /CLONE=RBRDT94 /FEA=EST /CNT=5 /TID=Rn.43774.1 /TIER=ConsEnd /STK=2 /UG=Rn.43774 /UG_TITLE=ESTs, Highly similar to mab-21-like 1 (C. elegans) (Mus musculus) (M.musculus) AI406423 mab-21-like 1 (C. elegans) Mab21l1 688394 NM_001109497 0008284 // positive regulation of cell proliferation // not recorded /// 0043010 // camera-type eye development // not recorded 0005634 // nucleus // not recorded 1379573_at AA818730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818730 /DB_XREF=gi:4227410 /DB_XREF=UI-R-A0-ay-f-11-0-UI.s1 /CLONE=UI-R-A0-ay-f-11-0-UI /FEA=EST /CNT=5 /TID=Rn.16529.1 /TIER=ConsEnd /STK=2 /UG=Rn.16529 /UG_TITLE=ESTs AA818730 1379574_at AI575248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575248 /DB_XREF=gi:4559624 /DB_XREF=UI-R-Y0-vc-c-10-0-UI.s1 /CLONE=UI-R-Y0-vc-c-10-0-UI /FEA=EST /CNT=5 /TID=Rn.25551.1 /TIER=ConsEnd /STK=2 /UG=Rn.25551 /UG_TITLE=ESTs, Highly similar to MAN1_HUMAN INNER NUCLEAR MEMBRANE PROTEIN MAN1 (H.sapiens) AI575248 LEM domain containing 3 Lemd3 680066 NM_001191000 /// XM_001055542 /// XM_002726900 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0032926 // negative regulation of activin receptor signaling pathway // not recorded 0005635 // nuclear envelope // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005637 // nuclear inner membrane // not recorded /// 0005639 // integral to nuclear inner membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379575_at BF412271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412271 /DB_XREF=gi:11400260 /DB_XREF=UI-R-BT1-bnb-e-02-0-UI.s1 /CLONE=UI-R-BT1-bnb-e-02-0-UI /FEA=EST /CNT=5 /TID=Rn.55897.1 /TIER=ConsEnd /STK=2 /UG=Rn.55897 /UG_TITLE=ESTs BF412271 1379576_at AA848479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848479 /DB_XREF=gi:4131646 /DB_XREF=EST191239 /CLONE=RKIAC58 /FEA=EST /CNT=5 /TID=Rn.23764.1 /TIER=ConsEnd /STK=2 /UG=Rn.23764 /UG_TITLE=ESTs AA848479 1379577_at AW527171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527171 /DB_XREF=gi:7169585 /DB_XREF=UI-R-BO1-ajm-c-12-0-UI.s1 /CLONE=UI-R-BO1-ajm-c-12-0-UI /FEA=EST /CNT=5 /TID=Rn.46445.1 /TIER=ConsEnd /STK=2 /UG=Rn.46445 /UG_TITLE=ESTs, Weakly similar to MIC2_HUMAN T-CELL SURFACE GLYCOPROTEIN E2 PRECURSOR (H.sapiens) AW527171 1379578_at BF415114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415114 /DB_XREF=gi:11403103 /DB_XREF=UI-R-BJ2-bou-h-06-0-UI.s1 /CLONE=UI-R-BJ2-bou-h-06-0-UI /FEA=EST /CNT=5 /TID=Rn.51259.1 /TIER=ConsEnd /STK=2 /UG=Rn.51259 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) BF415114 zinc finger and BTB domain containing 20 Zbtb20 288105 NM_001105880 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379579_at AA892081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892081 /DB_XREF=gi:4132122 /DB_XREF=EST195884 /CLONE=RKIAM14 /FEA=EST /CNT=5 /TID=Rn.53327.1 /TIER=ConsEnd /STK=2 /UG=Rn.53327 /UG_TITLE=ESTs AA892081 LEA_4 domain containing protein RGD1359600 RGD1359600 307343 NM_001007688 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1379580_at BF398050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398050 /DB_XREF=gi:11383035 /DB_XREF=UI-R-BS2-beg-g-01-0-UI.s1 /CLONE=UI-R-BS2-beg-g-01-0-UI /FEA=EST /CNT=5 /TID=Rn.43055.1 /TIER=ConsEnd /STK=2 /UG=Rn.43055 /UG_TITLE=ESTs BF398050 chromodomain helicase DNA binding protein 6 Chd6 311607 NM_001107797 0006333 // chromatin assembly or disassembly // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation 1379581_at BI288586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288586 /DB_XREF=gi:14945318 /DB_XREF=UI-R-DK0-cdg-f-02-0-UI.s1 /CLONE=UI-R-DK0-cdg-f-02-0-UI /FEA=EST /CNT=5 /TID=Rn.18659.1 /TIER=ConsEnd /STK=2 /UG=Rn.18659 /UG_TITLE=ESTs BI288586 mitogen-activated protein kinase 1 interacting protein 1-like Mapk1ip1l 361028 NM_001108373 1379582_a_at AA998516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998516 /DB_XREF=gi:4290399 /DB_XREF=UI-R-C0-ic-a-11-0-UI.s1 /CLONE=UI-R-C0-ic-a-11-0-UI /FEA=EST /CNT=1 /TID=Rn.13094.2 /TIER=ConsEnd /STK=1 /UG=Rn.13094 /UG_TITLE=ESTs, Weakly similar to CGB1 RAT G2MITOTIC-SPECIFIC CYCLIN B1 (R.norvegicus) AA998516 cyclin A2 Ccna2 114494 NM_053702 0007049 // cell cycle // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded /// 0007265 // Ras protein signal transduction // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0033762 // response to glucagon stimulus // inferred from expression pattern /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0001939 // female pronucleus // not recorded /// 0001939 // female pronucleus // inferred from electronic annotation /// 0001940 // male pronucleus // not recorded /// 0001940 // male pronucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1379583_at AI715295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715295 /DB_XREF=gi:5032548 /DB_XREF=UI-R-Y0-abp-f-11-0-UI.s1 /CLONE=UI-R-Y0-abp-f-11-0-UI /FEA=EST /CNT=5 /TID=Rn.41391.1 /TIER=ConsEnd /STK=2 /UG=Rn.41391 /UG_TITLE=ESTs AI715295 AFG3(ATPase family gene 3)-like 1 (S. cerevisiae) Afg3l1 361436 NM_001108456 0006508 // proteolysis // inferred from electronic annotation /// 0030163 // protein catabolic process // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1379584_at AA848944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848944 /DB_XREF=gi:4131687 /DB_XREF=EST191706 /CLONE=RLUAI25 /FEA=EST /CNT=5 /TID=Rn.17187.1 /TIER=ConsEnd /STK=2 /UG=Rn.17187 /UG_TITLE=ESTs AA848944 1379585_at AA946230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946230 /DB_XREF=gi:4132720 /DB_XREF=EST201729 /CLONE=RLUBC62 /FEA=EST /CNT=5 /TID=Rn.47222.1 /TIER=ConsEnd /STK=2 /UG=Rn.47222 /UG_TITLE=ESTs AA946230 1379586_at BF564116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564116 /DB_XREF=gi:11673846 /DB_XREF=UI-R-C4-ale-b-06-0-UI.r1 /CLONE=UI-R-C4-ale-b-06-0-UI /FEA=EST /CNT=5 /TID=Rn.47386.1 /TIER=ConsEnd /STK=2 /UG=Rn.47386 /UG_TITLE=ESTs BF564116 ADAM metallopeptidase with thrombospondin type 1 motif, 19 Adamts19 361332 NM_001108433 0006508 // proteolysis // inferred from electronic annotation 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379587_at AI717097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717097 /DB_XREF=gi:5034347 /DB_XREF=UI-R-Y0-acu-h-02-0-UI.s1 /CLONE=UI-R-Y0-acu-h-02-0-UI /FEA=EST /CNT=5 /TID=Rn.41937.1 /TIER=ConsEnd /STK=2 /UG=Rn.41937 /UG_TITLE=ESTs, Weakly similar to RETINOL DEHYDROGENASE TYPE I (R.norvegicus) AI717097 retinol dehydrogenase 5 Rdh5 366791 XM_002726857 /// XM_345770 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1379588_at AA874805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA874805 /DB_XREF=gi:4230688 /DB_XREF=UI-R-E0-bw-g-10-0-UI.s1 /CLONE=UI-R-E0-bw-g-10-0-UI /FEA=EST /CNT=5 /TID=Rn.22638.1 /TIER=ConsEnd /STK=2 /UG=Rn.22638 /UG_TITLE=ESTs AA874805 1379589_at AA957878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957878 /DB_XREF=gi:4277768 /DB_XREF=UI-R-E1-fv-g-01-0-UI.s2 /CLONE=UI-R-E1-fv-g-01-0-UI /FEA=EST /CNT=5 /TID=Rn.23179.1 /TIER=ConsEnd /STK=2 /UG=Rn.23179 /UG_TITLE=ESTs AA957878 zinc finger protein 536 Znf536 292820 XM_001077206 /// XM_218522 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1379590_at AW527413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527413 /DB_XREF=gi:7169827 /DB_XREF=UI-R-BO1-ajt-b-01-0-UI.s1 /CLONE=UI-R-BO1-ajt-b-01-0-UI /FEA=EST /CNT=5 /TID=Rn.46376.1 /TIER=ConsEnd /STK=2 /UG=Rn.46376 /UG_TITLE=ESTs, Highly similar to U2 SMALL NUCLEAR RIBONUCLEOPROTEIN AUXILIARY FACTOR 35 KD SUBUNIT RELATED-PROTEIN 1 (M.musculus) AW527413 zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1 Zrsr1 498425 NM_001017504 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379591_at AI228518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228518 /DB_XREF=gi:3812405 /DB_XREF=EST225213 /CLONE=RBRCV93 /FEA=EST /CNT=5 /TID=Rn.55335.1 /TIER=ConsEnd /STK=2 /UG=Rn.55335 /UG_TITLE=ESTs AI228518 1379592_at AI045151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045151 /DB_XREF=gi:3291970 /DB_XREF=UI-R-C1-kk-b-10-0-UI.s1 /CLONE=UI-R-C1-kk-b-10-0-UI /FEA=EST /CNT=5 /TID=Rn.16130.1 /TIER=ConsEnd /STK=2 /UG=Rn.16130 /UG_TITLE=ESTs, Weakly similar to solute carrier family 25 (carnitineacylcarnitine translocase), member 20 (Rattus norvegicus) (R.norvegicus) AI045151 solute carrier family 25, member 13 (citrin) Slc25a13 362322 XM_001054092 /// XM_342640 0003333 // amino acid transmembrane transport // not recorded /// 0006754 // ATP biosynthetic process // not recorded /// 0015807 // L-amino acid transport // not recorded /// 0015810 // aspartate transport // not recorded /// 0015813 // L-glutamate transport // not recorded /// 0043490 // malate-aspartate shuttle // not recorded /// 0045333 // cellular respiration // not recorded /// 0051592 // response to calcium ion // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005313 // L-glutamate transmembrane transporter activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0015183 // L-aspartate transmembrane transporter activity // not recorded 1379593_at AI007666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI007666 /DB_XREF=gi:3221498 /DB_XREF=EST202117 /CLONE=RBRAS87 /FEA=EST /CNT=5 /TID=Rn.22121.1 /TIER=ConsEnd /STK=2 /UG=Rn.22121 /UG_TITLE=ESTs, Weakly similar to JC4647 KW8 protein - rat (R.norvegicus) AI007666 oligodendrocyte lineage transcription factor 2 Olig2 304103 NM_001100557 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0021529 // spinal cord oligodendrocyte cell differentiation // not recorded /// 0021529 // spinal cord oligodendrocyte cell differentiation // inferred from electronic annotation /// 0021530 // spinal cord oligodendrocyte cell fate specification // inferred from electronic annotation /// 0021530 // spinal cord oligodendrocyte cell fate specification // not recorded /// 0042552 // myelination // inferred from electronic annotation /// 0042552 // myelination // not recorded /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0048709 // oligodendrocyte differentiation // not recorded /// 0048709 // oligodendrocyte differentiation // inferred from electronic annotation /// 0048714 // positive regulation of oligodendrocyte differentiation // inferred from electronic annotation /// 0048714 // positive regulation of oligodendrocyte differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1379594_at AW524408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524408 /DB_XREF=gi:7166793 /DB_XREF=UI-R-BO0-ahx-a-03-0-UI.s1 /CLONE=UI-R-BO0-ahx-a-03-0-UI /FEA=EST /CNT=5 /TID=Rn.42056.1 /TIER=ConsEnd /STK=2 /UG=Rn.42056 /UG_TITLE=ESTs AW524408 1379595_at AI171745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171745 /DB_XREF=gi:3711785 /DB_XREF=EST217727 /CLONE=RMUBQ15 /FEA=EST /CNT=5 /TID=Rn.11649.1 /TIER=ConsEnd /STK=2 /UG=Rn.11649 /UG_TITLE=ESTs AI171745 transmembrane protein 60 Tmem60 296761 NM_001191610 /// XM_001063081 /// XM_216066 1379596_at AA964531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964531 /DB_XREF=gi:4279405 /DB_XREF=UI-R-C0-gv-h-03-0-UI.s1 /CLONE=UI-R-C0-gv-h-03-0-UI /FEA=EST /CNT=5 /TID=Rn.12109.1 /TIER=ConsEnd /STK=2 /UG=Rn.12109 /UG_TITLE=ESTs AA964531 SRY (sex determining region Y)-box 21 Sox21 306168 XM_001078360 0006355 // regulation of transcription, DNA-dependent // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded 1379597_at AI011037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011037 /DB_XREF=gi:3224869 /DB_XREF=EST205488 /CLONE=RMUAW70 /FEA=EST /CNT=5 /TID=Rn.24109.1 /TIER=ConsEnd /STK=2 /UG=Rn.24109 /UG_TITLE=ESTs AI011037 1379598_at AI071649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071649 /DB_XREF=gi:3397864 /DB_XREF=UI-R-C1-ku-a-07-0-UI.s2 /CLONE=UI-R-C1-ku-a-07-0-UI /FEA=EST /CNT=5 /TID=Rn.19450.1 /TIER=ConsEnd /STK=2 /UG=Rn.19450 /UG_TITLE=ESTs AI071649 1379599_at AW142370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142370 /DB_XREF=gi:6162269 /DB_XREF=EST292620 /CLONE=RGIAI40 /FEA=EST /CNT=5 /TID=Rn.19502.1 /TIER=ConsEnd /STK=2 /UG=Rn.19502 /UG_TITLE=ESTs AW142370 1379600_at BF387498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387498 /DB_XREF=gi:11372322 /DB_XREF=UI-R-CA1-bbn-b-02-0-UI.s1 /CLONE=UI-R-CA1-bbn-b-02-0-UI /FEA=EST /CNT=5 /TID=Rn.64097.1 /TIER=ConsEnd /STK=2 /UG=Rn.64097 /UG_TITLE=ESTs BF387498 1379601_at AI030982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030982 /DB_XREF=gi:3248808 /DB_XREF=UI-R-C0-je-b-07-0-UI.s1 /CLONE=UI-R-C0-je-b-07-0-UI /FEA=EST /CNT=5 /TID=Rn.17200.1 /TIER=ConsEnd /STK=2 /UG=Rn.17200 /UG_TITLE=ESTs AI030982 alkB, alkylation repair homolog 5 (E. coli) Alkbh5 303193 XM_001077537 /// XM_220525 1379602_at AI010055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010055 /DB_XREF=gi:3223887 /DB_XREF=EST204506 /CLONE=RLUBT07 /FEA=EST /CNT=5 /TID=Rn.17520.1 /TIER=ConsEnd /STK=2 /UG=Rn.17520 /UG_TITLE=ESTs AI010055 1379603_at BE116890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116890 /DB_XREF=gi:8509035 /DB_XREF=UI-R-BS1-azg-h-04-0-UI.s1 /CLONE=UI-R-BS1-azg-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.35589.1 /TIER=ConsEnd /STK=2 /UG=Rn.35589 /UG_TITLE=ESTs BE116890 Cas-Br-M (murine) ecotropic retroviral transforming sequence Cbl 500985 XM_001066453 /// XM_002727049 /// XM_002729914 /// XM_576396 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0016600 // flotillin complex // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded 1379604_at BF284937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284937 /DB_XREF=gi:11216007 /DB_XREF=EST449528 /CLONE=RGIEX90 /FEA=EST /CNT=5 /TID=Rn.8699.1 /TIER=ConsEnd /STK=2 /UG=Rn.8699 /UG_TITLE=ESTs, Weakly similar to apolipoprotein L, 3; TNF-inducible protein CG12-1 (Homo sapiens) (H.sapiens) BF284937 apolipoprotein L, 3 /// similar to apolipoprotein L, 3 Apol3 /// LOC681351 315108 /// 681351 NM_001013175 /// XM_001061370 0006869 // lipid transport // inferred from electronic annotation /// 0042157 // lipoprotein metabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0008289 // lipid binding // inferred from electronic annotation 1379605_at AW523671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523671 /DB_XREF=gi:7166056 /DB_XREF=UI-R-BO0-aic-g-10-0-UI.s1 /CLONE=UI-R-BO0-aic-g-10-0-UI /FEA=EST /CNT=4 /TID=Rn.27788.1 /TIER=ConsEnd /STK=2 /UG=Rn.27788 /UG_TITLE=ESTs AW523671 1379606_at BM392291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392291 /DB_XREF=gi:18192344 /DB_XREF=UI-R-DO1-ckp-b-04-0-UI.s1 /CLONE=UI-R-DO1-ckp-b-04-0-UI /FEA=EST /CNT=4 /TID=Rn.52327.1 /TIER=ConsEnd /STK=2 /UG=Rn.52327 /UG_TITLE=ESTs, Highly similar to JC4962 rab protein 30 (H.sapiens) BM392291 RAB30, member RAS oncogene family Rab30 308821 NM_001015012 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1379607_at AW527767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527767 /DB_XREF=gi:7170221 /DB_XREF=UI-R-BO1-ajk-d-04-0-UI.s1 /CLONE=UI-R-BO1-ajk-d-04-0-UI /FEA=EST /CNT=4 /TID=Rn.49237.1 /TIER=ConsEnd /STK=2 /UG=Rn.49237 /UG_TITLE=ESTs AW527767 1379608_at AA899113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899113 /DB_XREF=gi:4231613 /DB_XREF=UI-R-E0-cw-d-12-0-UI.s1 /CLONE=UI-R-E0-cw-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.43080.1 /TIER=ConsEnd /STK=2 /UG=Rn.43080 /UG_TITLE=ESTs AA899113 RGD1560010 RGD1560010 310537 NM_001107685 1379609_at BF283568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283568 /DB_XREF=gi:11214638 /DB_XREF=EST448159 /CLONE=RGIEE07 /FEA=EST /CNT=4 /TID=Rn.15427.1 /TIER=ConsEnd /STK=2 /UG=Rn.15427 /UG_TITLE=ESTs BF283568 1379610_at BF409025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409025 /DB_XREF=gi:11397000 /DB_XREF=UI-R-BT1-bkl-b-05-0-UI.s1 /CLONE=UI-R-BT1-bkl-b-05-0-UI /FEA=EST /CNT=4 /TID=Rn.64135.1 /TIER=ConsEnd /STK=2 /UG=Rn.64135 /UG_TITLE=ESTs, Weakly similar to SN1L_RAT PROBABLE SERINETHREONINE PROTEIN KINASE SNF1LK (SALT-INDUCIBLE PROTEIN KINASE) (PROTEIN KINASE KID2) (R.norvegicus) BF409025 1379611_at BF416979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416979 /DB_XREF=gi:11404968 /DB_XREF=UI-R-CN0-bkw-d-02-0-UI.s1 /CLONE=UI-R-CN0-bkw-d-02-0-UI /FEA=EST /CNT=4 /TID=Rn.12236.1 /TIER=ConsEnd /STK=2 /UG=Rn.12236 /UG_TITLE=ESTs BF416979 1379612_at BI276164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276164 /DB_XREF=gi:14920814 /DB_XREF=UI-R-CX0-bwz-h-01-0-UI.s1 /CLONE=UI-R-CX0-bwz-h-01-0-UI /FEA=EST /CNT=4 /TID=Rn.48197.1 /TIER=ConsEnd /STK=2 /UG=Rn.48197 /UG_TITLE=ESTs BI276164 Mitogen-activated protein kinase 8 Mapk8 116554 XM_001056513 /// XM_341399 0001503 // ossification // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006915 // apoptosis // not recorded /// 0006954 // inflammatory response // inferred from direct assay /// 0006970 // response to osmotic stress // inferred from direct assay /// 0007165 // signal transduction // inferred from direct assay /// 0007254 // JNK cascade // not recorded /// 0007254 // JNK cascade // inferred from sequence or structural similarity /// 0007254 // JNK cascade // inferred from electronic annotation /// 0007258 // JUN phosphorylation // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0009408 // response to heat // inferred from direct assay /// 0009411 // response to UV // not recorded /// 0018107 // peptidyl-threonine phosphorylation // not recorded /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0031116 // positive regulation of microtubule polymerization // inferred from mutant phenotype /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0031558 // induction of apoptosis in response to chemical stimulus // not recorded /// 0042542 // response to hydrogen peroxide // inferred from direct assay /// 0043065 // positive regulation of apoptosis // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0043066 // negative regulation of apoptosis // not recorded /// 0045740 // positive regulation of DNA replication // inferred from mutant phenotype /// 0046686 // response to cadmium ion // not recorded /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0032839 // dendrite cytoplasm // inferred from direct assay /// 0033267 // axon part // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004705 // JUN kinase activity // inferred from direct assay /// 0004705 // JUN kinase activity // not recorded /// 0004705 // JUN kinase activity // inferred from sequence or structural similarity /// 0004705 // JUN kinase activity // traceable author statement /// 0004705 // JUN kinase activity // inferred from electronic annotation /// 0004707 // MAP kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1379613_at BM390301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390301 /DB_XREF=gi:18190354 /DB_XREF=UI-R-CN1-cjq-e-20-0-UI.s1 /CLONE=UI-R-CN1-cjq-e-20-0-UI /FEA=EST /CNT=4 /TID=Rn.54182.1 /TIER=ConsEnd /STK=2 /UG=Rn.54182 /UG_TITLE=ESTs BM390301 poly (ADP-ribose) polymerase family, member 14 Parp14 303903 NM_001191659 /// XM_001071334 /// XM_221401 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // not recorded 1379614_at AA964378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964378 /DB_XREF=gi:4279253 /DB_XREF=UI-R-C0-gw-h-08-0-UI.s1 /CLONE=UI-R-C0-gw-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.32986.1 /TIER=ConsEnd /STK=2 /UG=Rn.32986 /UG_TITLE=ESTs AA964378 1379615_at AI011501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011501 /DB_XREF=gi:3225333 /DB_XREF=EST205952 /CLONE=ROVAV77 /FEA=EST /CNT=4 /TID=Rn.19517.1 /TIER=ConsEnd /STK=2 /UG=Rn.19517 /UG_TITLE=ESTs AI011501 kelch domain containing 5 Klhdc5 500367 NM_001109257 0005515 // protein binding // inferred from electronic annotation 1379616_at BM383436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383436 /DB_XREF=gi:18183489 /DB_XREF=UI-R-DM1-ckb-j-12-0-UI.s1 /CLONE=UI-R-DM1-ckb-j-12-0-UI /FEA=EST /CNT=4 /TID=Rn.45877.1 /TIER=ConsEnd /STK=2 /UG=Rn.45877 /UG_TITLE=ESTs BM383436 1379617_at BF288779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288779 /DB_XREF=gi:11219759 /DB_XREF=EST453280 /CLONE=RGIGW32 /FEA=EST /CNT=4 /TID=Rn.28945.1 /TIER=ConsEnd /STK=2 /UG=Rn.28945 /UG_TITLE=ESTs, Weakly similar to ECT2 MOUSE ECT2 PROTEIN (M.musculus) BF288779 1379618_at AI172526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172526 /DB_XREF=gi:3712566 /DB_XREF=UI-R-C2p-nu-f-03-0-UI.s1 /CLONE=UI-R-C2p-nu-f-03-0-UI /FEA=EST /CNT=4 /TID=Rn.22445.1 /TIER=ConsEnd /STK=2 /UG=Rn.22445 /UG_TITLE=ESTs AI172526 1379619_at BE104952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104952 /DB_XREF=gi:8497053 /DB_XREF=UI-R-BX0-arw-f-03-0-UI.s1 /CLONE=UI-R-BX0-arw-f-03-0-UI /FEA=EST /CNT=4 /TID=Rn.27422.1 /TIER=ConsEnd /STK=2 /UG=Rn.27422 /UG_TITLE=ESTs BE104952 1379620_at AW529639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529639 /DB_XREF=gi:7172053 /DB_XREF=UI-R-BT1-akn-e-11-0-UI.s1 /CLONE=UI-R-BT1-akn-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.47265.1 /TIER=ConsEnd /STK=2 /UG=Rn.47265 /UG_TITLE=ESTs AW529639 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008158 // hedgehog receptor activity // inferred from electronic annotation 1379621_at AI136896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136896 /DB_XREF=gi:3637673 /DB_XREF=UI-R-C2p-of-g-08-0-UI.s1 /CLONE=UI-R-C2p-of-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.22759.1 /TIER=ConsEnd /STK=2 /UG=Rn.22759 /UG_TITLE=ESTs AI136896 SERTA domain containing 3 Sertad3 499108 NM_001017513 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded 1379622_at BF405145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405145 /DB_XREF=gi:11393120 /DB_XREF=UI-R-CA1-biq-c-06-0-UI.s1 /CLONE=UI-R-CA1-biq-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.28061.1 /TIER=ConsEnd /STK=2 /UG=Rn.28061 /UG_TITLE=ESTs BF405145 1379623_at AA874896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA874896 /DB_XREF=gi:4230778 /DB_XREF=UI-R-E0-ck-e-04-0-UI.s1 /CLONE=UI-R-E0-ck-e-04-0-UI /FEA=EST /CNT=4 /TID=Rn.3166.1 /TIER=ConsEnd /STK=2 /UG=Rn.3166 /UG_TITLE=ESTs, Weakly similar to acid phosphatase (Caenorhabditis elegans) (C.elegans) AA874896 similar to chromosome 10 open reading frame 4; similar to putative acid phosphatase F26C11.1 RGD1309482 365458 NM_001014246 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379624_at AA964442 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964442 /DB_XREF=gi:4279316 /DB_XREF=UI-R-E1-gp-e-07-0-UI.s1 /CLONE=UI-R-E1-gp-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.22683.1 /TIER=ConsEnd /STK=2 /UG=Rn.22683 /UG_TITLE=ESTs AA964442 1379625_at BG664461 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664461 /DB_XREF=gi:13886383 /DB_XREF=DRABEB11 /CLONE=DRABEB11 /FEA=EST /CNT=4 /TID=Rn.8041.1 /TIER=ConsEnd /STK=2 /UG=Rn.8041 /UG_TITLE=ESTs BG664461 family with sequence similarity 164, member A Fam164a 310244 NM_001107661 1379626_at AA946353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946353 /DB_XREF=gi:4132755 /DB_XREF=EST201852 /CLONE=RLUBH13 /FEA=EST /CNT=4 /TID=Rn.21462.1 /TIER=ConsEnd /STK=2 /UG=Rn.21462 /UG_TITLE=ESTs AA946353 SATB homeobox 1 Satb1 316164 NM_001012129 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006325 // chromatin organization // inferred from electronic annotation /// 0006325 // chromatin organization // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0016571 // histone methylation // inferred from electronic annotation /// 0016571 // histone methylation // not recorded /// 0042110 // T cell activation // inferred from electronic annotation /// 0042110 // T cell activation // not recorded /// 0043367 // CD4-positive, alpha beta T cell differentiation // inferred from electronic annotation /// 0043367 // CD4-positive, alpha beta T cell differentiation // not recorded /// 0043374 // CD8-positive, alpha-beta T cell differentiation // inferred from electronic annotation /// 0043374 // CD8-positive, alpha-beta T cell differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0050798 // activated T cell proliferation // inferred from electronic annotation /// 0050798 // activated T cell proliferation // not recorded /// 0060004 // reflex // inferred from electronic annotation /// 0060004 // reflex // not recorded 0000785 // chromatin // inferred from electronic annotation /// 0000785 // chromatin // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005720 // nuclear heterochromatin // inferred from electronic annotation /// 0005720 // nuclear heterochromatin // not recorded /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1379627_at AW534630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534630 /DB_XREF=gi:7177044 /DB_XREF=UI-R-C4-alt-h-09-0-UI.s1 /CLONE=UI-R-C4-alt-h-09-0-UI /FEA=EST /CNT=4 /TID=Rn.38604.1 /TIER=ConsEnd /STK=2 /UG=Rn.38604 /UG_TITLE=ESTs AW534630 transmembrane 9 superfamily member 3 Tm9sf3 309475 XM_002725800 /// XM_220013 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // not recorded 1379628_at AI070862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070862 /DB_XREF=gi:3397113 /DB_XREF=UI-R-C2-ms-b-02-0-UI.s1 /CLONE=UI-R-C2-ms-b-02-0-UI /FEA=EST /CNT=4 /TID=Rn.21362.1 /TIER=ConsEnd /STK=2 /UG=Rn.21362 /UG_TITLE=ESTs AI070862 1379629_at BE118613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118613 /DB_XREF=gi:8510718 /DB_XREF=UI-R-BJ1-azq-g-07-0-UI.s1 /CLONE=UI-R-BJ1-azq-g-07-0-UI /FEA=EST /CNT=4 /TID=Rn.23665.1 /TIER=ConsEnd /STK=2 /UG=Rn.23665 /UG_TITLE=ESTs, Highly similar to A56704 regulatory protein Myef-2 - mouse (M.musculus) BE118613 1379630_at AI105051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105051 /DB_XREF=gi:3709234 /DB_XREF=EST214340 /CLONE=RHECN03 /FEA=EST /CNT=4 /TID=Rn.37735.1 /TIER=ConsEnd /STK=2 /UG=Rn.37735 /UG_TITLE=ESTs AI105051 1379631_at AI071665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071665 /DB_XREF=gi:3397880 /DB_XREF=UI-R-C1-ku-d-08-0-UI.s2 /CLONE=UI-R-C1-ku-d-08-0-UI /FEA=EST /CNT=4 /TID=Rn.17595.1 /TIER=ConsEnd /STK=2 /UG=Rn.17595 /UG_TITLE=ESTs AI071665 colony stimulating factor 1 (macrophage) Csf1 78965 NM_023981 0001503 // ossification // inferred from mutant phenotype /// 0001954 // positive regulation of cell-matrix adhesion // inferred from electronic annotation /// 0001954 // positive regulation of cell-matrix adhesion // not recorded /// 0003006 // developmental process involved in reproduction // inferred from electronic annotation /// 0003006 // developmental process involved in reproduction // not recorded /// 0007275 // multicellular organismal development // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0010744 // positive regulation of macrophage derived foam cell differentiation // inferred from electronic annotation /// 0010744 // positive regulation of macrophage derived foam cell differentiation // not recorded /// 0030225 // macrophage differentiation // inferred from expression pattern /// 0030278 // regulation of ossification // inferred from electronic annotation /// 0030278 // regulation of ossification // not recorded /// 0030316 // osteoclast differentiation // inferred from mutant phenotype /// 0030316 // osteoclast differentiation // not recorded /// 0030316 // osteoclast differentiation // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0032270 // positive regulation of cellular protein metabolic process // inferred from electronic annotation /// 0032270 // positive regulation of cellular protein metabolic process // not recorded /// 0032946 // positive regulation of mononuclear cell proliferation // inferred from electronic annotation /// 0032946 // positive regulation of mononuclear cell proliferation // not recorded /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0042476 // odontogenesis // inferred from mutant phenotype /// 0042488 // positive regulation of odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042488 // positive regulation of odontogenesis of dentine-containing tooth // not recorded /// 0045651 // positive regulation of macrophage differentiation // inferred from electronic annotation /// 0045651 // positive regulation of macrophage differentiation // not recorded /// 0045657 // positive regulation of monocyte differentiation // inferred from electronic annotation /// 0045657 // positive regulation of monocyte differentiation // not recorded /// 0045672 // positive regulation of osteoclast differentiation // inferred from electronic annotation /// 0045672 // positive regulation of osteoclast differentiation // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // not recorded /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060444 // branching involved in mammary gland duct morphogenesis // not recorded /// 0060611 // mammary gland fat development // inferred from electronic annotation /// 0060611 // mammary gland fat development // not recorded /// 0060763 // mammary duct terminal end bud growth // inferred from electronic annotation /// 0060763 // mammary duct terminal end bud growth // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043235 // receptor complex // inferred from electronic annotation /// 0043235 // receptor complex // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005157 // macrophage colony-stimulating factor receptor binding // inferred from electronic annotation /// 0005157 // macrophage colony-stimulating factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation 1379632_at AI502790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502790 /DB_XREF=gi:4400641 /DB_XREF=UI-R-C1-lc-f-01-0-UI.s1 /CLONE=UI-R-C1-lc-f-01-0-UI /FEA=EST /CNT=4 /TID=Rn.36117.1 /TIER=ConsEnd /STK=2 /UG=Rn.36117 /UG_TITLE=ESTs AI502790 1379633_a_at BE096453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096453 /DB_XREF=gi:8487384 /DB_XREF=UI-R-BU0-apg-c-11-0-UI.s1 /CLONE=UI-R-BU0-apg-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.33241.2 /TIER=ConsEnd /STK=0 /UG=Rn.33241 /UG_TITLE=ESTs, Moderately similar to UBAL_HUMAN UBIQUITIN-ACTIVATING ENZYME E1 HOMOLOG (H.sapiens) BE096453 ubiquitin-like modifier activating enzyme 7 Uba7 301000 NM_001106856 0006464 // protein modification process // inferred from electronic annotation /// 0006464 // protein modification process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0019941 // modification-dependent protein catabolic process // not recorded /// 0032020 // ISG15-protein conjugation // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008641 // small protein activating enzyme activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019782 // ISG15 activating enzyme activity // not recorded 1379634_at AW921187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921187 /DB_XREF=gi:8087008 /DB_XREF=EST352491 /CLONE=RGIHP41 /FEA=EST /CNT=4 /TID=Rn.33241.1 /TIER=ConsEnd /STK=2 /UG=Rn.33241 /UG_TITLE=ESTs, Moderately similar to UBAL_HUMAN UBIQUITIN-ACTIVATING ENZYME E1 HOMOLOG (H.sapiens) AW921187 ubiquitin-like modifier activating enzyme 7 Uba7 301000 NM_001106856 0006464 // protein modification process // inferred from electronic annotation /// 0006464 // protein modification process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0019941 // modification-dependent protein catabolic process // not recorded /// 0032020 // ISG15-protein conjugation // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008641 // small protein activating enzyme activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019782 // ISG15 activating enzyme activity // not recorded 1379635_at BF399325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399325 /DB_XREF=gi:11384329 /DB_XREF=UI-R-CA1-bjb-c-16-0-UI.s1 /CLONE=UI-R-CA1-bjb-c-16-0-UI /FEA=EST /CNT=4 /TID=Rn.63210.1 /TIER=ConsEnd /STK=2 /UG=Rn.63210 /UG_TITLE=ESTs, Weakly similar to S60652 synapse-associated protein sap47-1 - fruit fly (D.melanogaster) BF399325 synapse associated protein 1 Syap1 302678 NM_001004253 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 1379636_at AW528443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528443 /DB_XREF=gi:7170857 /DB_XREF=UI-R-BO1-ajl-d-12-0-UI.s1 /CLONE=UI-R-BO1-ajl-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.25365.1 /TIER=ConsEnd /STK=2 /UG=Rn.25365 /UG_TITLE=ESTs AW528443 family with sequence similarity 82, member A1 Fam82a1 313840 NM_001037200 0000922 // spindle pole // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1379637_at BG670537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670537 /DB_XREF=gi:13892636 /DB_XREF=DRNBCD01 /CLONE=DRNBCD01 /FEA=EST /CNT=4 /TID=Rn.20206.1 /TIER=ConsEnd /STK=2 /UG=Rn.20206 /UG_TITLE=ESTs BG670537 Similar to c-myc promoter binding protein RGD1562639 315756 XR_009072 /// XR_086318 1379638_at BF401654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401654 /DB_XREF=gi:11389629 /DB_XREF=UI-R-CA0-bgn-b-04-0-UI.s1 /CLONE=UI-R-CA0-bgn-b-04-0-UI /FEA=EST /CNT=4 /TID=Rn.57215.1 /TIER=ConsEnd /STK=2 /UG=Rn.57215 /UG_TITLE=ESTs BF401654 1379639_at AI229320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229320 /DB_XREF=gi:3813207 /DB_XREF=EST226015 /CLONE=RBRDG90 /FEA=EST /CNT=4 /TID=Rn.23782.1 /TIER=ConsEnd /STK=2 /UG=Rn.23782 /UG_TITLE=ESTs AI229320 Src homology 2 domain containing E She 685088 XM_001062249 /// XM_002725993 0005515 // protein binding // inferred from electronic annotation 1379640_at AI578083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578083 /DB_XREF=gi:4562459 /DB_XREF=UI-R-C3-tk-d-04-0-UI.s2 /CLONE=UI-R-C3-tk-d-04-0-UI /FEA=EST /CNT=4 /TID=Rn.7667.1 /TIER=ConsEnd /STK=2 /UG=Rn.7667 /UG_TITLE=ESTs, Weakly similar to I65309 autoantigen p69 - rat (R.norvegicus) AI578083 islet cell autoantigen 1-like Ica1l 316432 NM_199400 1379641_at BE113016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113016 /DB_XREF=gi:8505121 /DB_XREF=UI-R-BJ1-awf-d-09-0-UI.s1 /CLONE=UI-R-BJ1-awf-d-09-0-UI /FEA=EST /CNT=4 /TID=Rn.27421.1 /TIER=ConsEnd /STK=2 /UG=Rn.27421 /UG_TITLE=ESTs BE113016 Radixin Rdx 315655 NM_001005889 0030033 // microvillus assembly // not recorded /// 0045176 // apical protein localization // inferred from mutant phenotype /// 0045176 // apical protein localization // not recorded /// 0051016 // barbed-end actin filament capping // inferred from direct assay /// 0070848 // response to growth factor stimulus // inferred from expression pattern 0001726 // ruffle // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005902 // microvillus // inferred from direct assay /// 0005902 // microvillus // not recorded /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0019898 // extrinsic to membrane // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030175 // filopodium // not recorded /// 0030496 // midbody // inferred from direct assay /// 0032154 // cleavage furrow // inferred from direct assay /// 0032420 // stereocilium // not recorded /// 0045177 // apical part of cell // not recorded 0003779 // actin binding // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 1379642_at BM386116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386116 /DB_XREF=gi:18186169 /DB_XREF=UI-R-CN1-cjf-a-17-0-UI.s1 /CLONE=UI-R-CN1-cjf-a-17-0-UI /FEA=EST /CNT=4 /TID=Rn.55569.1 /TIER=ConsEnd /STK=2 /UG=Rn.55569 /UG_TITLE=ESTs BM386116 1379643_at AI407180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407180 /DB_XREF=gi:4250684 /DB_XREF=EST235468 /CLONE=ROVDW27 /FEA=EST /CNT=4 /TID=Rn.15450.1 /TIER=ConsEnd /STK=2 /UG=Rn.15450 /UG_TITLE=ESTs AI407180 cytochrome P450 19A1-like LOC100359906 100359906 XM_002729904 0006703 // estrogen biosynthetic process // traceable author statement /// 0008209 // androgen metabolic process // inferred from electronic annotation /// 0050803 // regulation of synapse structure and activity // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060736 // prostate gland growth // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from direct assay /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1379644_at BE100978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100978 /DB_XREF=gi:8492882 /DB_XREF=UI-R-BJ1-aug-f-12-0-UI.s1 /CLONE=UI-R-BJ1-aug-f-12-0-UI /FEA=EST /CNT=4 /TID=Rn.34277.1 /TIER=ConsEnd /STK=2 /UG=Rn.34277 /UG_TITLE=ESTs BE100978 hypothetical protein LOC686506 LOC686506 686506 NM_001134729 1379645_at BE113614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113614 /DB_XREF=gi:8505719 /DB_XREF=UI-R-BJ1-awg-d-02-0-UI.s1 /CLONE=UI-R-BJ1-awg-d-02-0-UI /FEA=EST /CNT=4 /TID=Rn.49220.1 /TIER=ConsEnd /STK=2 /UG=Rn.49220 /UG_TITLE=ESTs, Weakly similar to HMG (high mobility group) box, Bromodomain (5 domains), Zinc finger, C2H2 type (Caenorhabditis elegans) (C.elegans) BE113614 polybromo 1 Pbrm1 306254 XM_001059164 /// XM_240329 0001890 // placenta development // not recorded /// 0007507 // heart development // not recorded 0000776 // kinetochore // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0005515 // protein binding // not recorded 1379646_at AI229747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229747 /DB_XREF=gi:3813634 /DB_XREF=EST226442 /CLONE=REMCL44 /FEA=EST /CNT=4 /TID=Rn.23486.1 /TIER=ConsEnd /STK=2 /UG=Rn.23486 /UG_TITLE=ESTs AI229747 Similar to CDNA sequence BC024479 LOC500974 500974 XR_005433 /// XR_009636 1379647_at BI295140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295140 /DB_XREF=gi:14958287 /DB_XREF=UI-R-DK0-ceg-c-07-0-UI.s1 /CLONE=UI-R-DK0-ceg-c-07-0-UI /FEA=EST /CNT=4 /TID=Rn.15307.1 /TIER=ConsEnd /STK=2 /UG=Rn.15307 /UG_TITLE=ESTs BI295140 1379648_at AA900610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900610 /DB_XREF=gi:4233103 /DB_XREF=UI-R-E0-by-b-03-0-UI.s4 /CLONE=UI-R-E0-by-b-03-0-UI /FEA=EST /CNT=4 /TID=Rn.32464.1 /TIER=ConsEnd /STK=2 /UG=Rn.32464 /UG_TITLE=ESTs AA900610 1379649_at BF394502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394502 /DB_XREF=gi:11379368 /DB_XREF=UI-R-CA0-bfw-f-04-0-UI.s1 /CLONE=UI-R-CA0-bfw-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.40220.1 /TIER=ConsEnd /STK=2 /UG=Rn.40220 /UG_TITLE=ESTs BF394502 glycosyltransferase 8 domain containing 3 Glt8d3 300173 NM_001100887 0016266 // O-glycan processing // not recorded /// 0016266 // O-glycan processing // inferred from sequence or structural similarity /// 0016266 // O-glycan processing // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016763 // transferase activity, transferring pentosyl groups // inferred from electronic annotation /// 0035252 // UDP-xylosyltransferase activity // not recorded /// 0035252 // UDP-xylosyltransferase activity // inferred from sequence or structural similarity /// 0035252 // UDP-xylosyltransferase activity // inferred from electronic annotation 1379650_at AI231443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231443 /DB_XREF=gi:4135647 /DB_XREF=EST228131 /CLONE=REMDK23 /FEA=EST /CNT=4 /TID=Rn.43772.1 /TIER=ConsEnd /STK=2 /UG=Rn.43772 /UG_TITLE=ESTs, Highly similar to T34546 hypothetical protein DKFZp434B0328.1 (H.sapiens) AI231443 PDZ domain containing 8 Pdzd8 308000 NM_001107446 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379651_at BE109884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109884 /DB_XREF=gi:8501989 /DB_XREF=UI-R-CA0-axi-e-02-0-UI.s1 /CLONE=UI-R-CA0-axi-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.49009.1 /TIER=ConsEnd /STK=2 /UG=Rn.49009 /UG_TITLE=ESTs BE109884 Forkhead box P1 Foxp1 297480 NM_001034131 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0002329 // pre-B cell differentiation // not recorded /// 0002639 // positive regulation of immunoglobulin production // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007519 // skeletal muscle tissue development // not recorded /// 0009790 // embryo development // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030324 // lung development // not recorded /// 0033152 // immunoglobulin V(D)J recombination // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048745 // smooth muscle tissue development // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0055007 // cardiac muscle cell differentiation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1379652_at BM392091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392091 /DB_XREF=gi:18192144 /DB_XREF=UI-R-DO1-ckp-k-01-0-UI.s1 /CLONE=UI-R-DO1-ckp-k-01-0-UI /FEA=EST /CNT=4 /TID=Rn.48190.1 /TIER=ConsEnd /STK=2 /UG=Rn.48190 /UG_TITLE=ESTs BM392091 similar to kinesin-like protein (103.5 kD) (klp-6) RGD1559696 289309 XM_002728048 1379653_a_at AI176327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176327 /DB_XREF=gi:3726965 /DB_XREF=EST219910 /CLONE=ROVBQ15 /FEA=EST /CNT=4 /TID=Rn.12605.1 /TIER=ConsEnd /STK=2 /UG=Rn.12605 /UG_TITLE=ESTs, Highly similar to SH2A MOUSE SH2 DOMAIN PROTEIN 1A (M.musculus) AI176327 SH2 domain protein 1A Sh2d1a 501502 NM_001109313 0006959 // humoral immune response // inferred from electronic annotation /// 0006959 // humoral immune response // not recorded /// 0006968 // cellular defense response // inferred from electronic annotation /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // inferred from electronic annotation /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005070 // SH3/SH2 adaptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1379654_at AA946433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946433 /DB_XREF=gi:4132787 /DB_XREF=EST201932 /CLONE=ROVAR11 /FEA=EST /CNT=4 /TID=Rn.30339.1 /TIER=ConsEnd /STK=2 /UG=Rn.30339 /UG_TITLE=ESTs, Weakly similar to F56A3.2.p (Caenorhabditis elegans) (C.elegans) AA946433 GIY-YIG domain containing 2 Giyd2 293489 NM_001009292 0000724 // double-strand break repair via homologous recombination // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006281 // DNA repair // not recorded /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010792 // DNA double-strand break processing involved in repair via single-strand annealing // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0033557 // Slx1-Slx4 complex // not recorded 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008821 // crossover junction endodeoxyribonuclease activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017108 // 5'-flap endonuclease activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1379655_at AI104280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104280 /DB_XREF=gi:3708660 /DB_XREF=EST213569 /CLONE=RHEBZ72 /FEA=EST /CNT=4 /TID=Rn.28267.1 /TIER=ConsEnd /STK=2 /UG=Rn.28267 /UG_TITLE=ESTs AI104280 1379656_a_at AW529016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529016 /DB_XREF=gi:7171430 /DB_XREF=UI-R-BT1-aka-b-10-0-UI.s1 /CLONE=UI-R-BT1-aka-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.15637.1 /TIER=ConsEnd /STK=2 /UG=Rn.15637 /UG_TITLE=ESTs, Moderately similar to COR2_HUMAN CORONIN 2A (H.sapiens) AW529016 1379657_a_at BM386837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386837 /DB_XREF=gi:18186890 /DB_XREF=UI-R-CN1-cjh-k-22-0-UI.s1 /CLONE=UI-R-CN1-cjh-k-22-0-UI /FEA=EST /CNT=4 /TID=Rn.6317.1 /TIER=ConsEnd /STK=2 /UG=Rn.6317 /UG_TITLE=ESTs BM386837 zinc finger protein 511 Znf511 293586 NM_001106309 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1379658_at AA955863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955863 /DB_XREF=gi:4238258 /DB_XREF=UI-R-E1-ff-f-10-0-UI.s1 /CLONE=UI-R-E1-ff-f-10-0-UI /FEA=EST /CNT=4 /TID=Rn.8962.1 /TIER=ConsEnd /STK=2 /UG=Rn.8962 /UG_TITLE=ESTs AA955863 1379659_at BF284068 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284068 /DB_XREF=gi:11215138 /DB_XREF=EST448659 /CLONE=RGIEK55 /FEA=EST /CNT=4 /TID=Rn.23424.1 /TIER=ConsEnd /STK=2 /UG=Rn.23424 /UG_TITLE=ESTs BF284068 BMP-2 inducible kinase Bmp2k 498333 XM_002724945 /// XM_573559 0006468 // protein phosphorylation // inferred from electronic annotation /// 0030500 // regulation of bone mineralization // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0019208 // phosphatase regulator activity // inferred from electronic annotation 1379660_at AA850472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850472 /DB_XREF=gi:2938012 /DB_XREF=EST193239 /CLONE=ROVAG10 /FEA=EST /CNT=4 /TID=Rn.6611.1 /TIER=ConsEnd /STK=2 /UG=Rn.6611 /UG_TITLE=ESTs AA850472 1379661_at BG667935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667935 /DB_XREF=gi:13889857 /DB_XREF=DRABQH05 /CLONE=DRABQH05 /FEA=EST /CNT=4 /TID=Rn.46848.1 /TIER=ConsEnd /STK=2 /UG=Rn.46848 /UG_TITLE=ESTs BG667935 1379662_a_at AI011832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011832 /DB_XREF=gi:3225664 /DB_XREF=EST206283 /CLONE=RPLAP42 /FEA=EST /CNT=4 /TID=Rn.36146.1 /TIER=ConsEnd /STK=2 /UG=Rn.36146 /UG_TITLE=ESTs AI011832 1379663_at AI010254 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010254 /DB_XREF=gi:3224086 /DB_XREF=EST204705 /CLONE=RLUBV90 /FEA=EST /CNT=4 /TID=Rn.8001.1 /TIER=ConsEnd /STK=2 /UG=Rn.8001 /UG_TITLE=ESTs AI010254 1379664_at BF419602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419602 /DB_XREF=gi:11407591 /DB_XREF=UI-R-CA0-bpe-a-10-0-UI.s1 /CLONE=UI-R-CA0-bpe-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.64279.1 /TIER=ConsEnd /STK=2 /UG=Rn.64279 /UG_TITLE=ESTs BF419602 zinc finger CCCH type containing 13 Zc3h13 305955 NM_001170471 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379665_at AI177835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177835 /DB_XREF=gi:3728473 /DB_XREF=EST221482 /CLONE=RPLCH16 /FEA=EST /CNT=4 /TID=Rn.24163.1 /TIER=ConsEnd /STK=2 /UG=Rn.24163 /UG_TITLE=ESTs, Weakly similar to CYPB RAT PEPTIDYL-PROLYL CIS-TRANS ISOMERASE B PRECURSOR (R.norvegicus) AI177835 peptidylprolyl isomerase domain and WD repeat containing 1 Ppwd1 294711 NM_001106406 0006457 // protein folding // inferred from electronic annotation 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1379666_at BF417824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417824 /DB_XREF=gi:11405813 /DB_XREF=UI-R-CN0-blx-f-07-0-UI.s1 /CLONE=UI-R-CN0-blx-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.38868.1 /TIER=ConsEnd /STK=2 /UG=Rn.38868 /UG_TITLE=ESTs BF417824 1379667_at AW527612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527612 /DB_XREF=gi:7170026 /DB_XREF=UI-R-BT1-ajz-c-04-0-UI.s1 /CLONE=UI-R-BT1-ajz-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.46593.1 /TIER=ConsEnd /STK=2 /UG=Rn.46593 /UG_TITLE=ESTs AW527612 1379668_at BI296117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296117 /DB_XREF=gi:14960237 /DB_XREF=UI-R-DK0-cew-e-08-0-UI.s1 /CLONE=UI-R-DK0-cew-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.37199.1 /TIER=ConsEnd /STK=2 /UG=Rn.37199 /UG_TITLE=ESTs, Weakly similar to YMP8_CAEEL HYPOTHETICAL 62.4 KDA PROTEIN B0361.8 IN CHROMOSOME III (C.elegans) BI296117 asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast) Alg11 361174 NM_001108401 0009058 // biosynthetic process // inferred from electronic annotation 0005515 // protein binding // not recorded 1379669_at BI275651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275651 /DB_XREF=gi:14919772 /DB_XREF=UI-R-CW0-bwm-a-11-0-UI.s1 /CLONE=UI-R-CW0-bwm-a-11-0-UI /FEA=EST /CNT=4 /TID=Rn.43480.1 /TIER=ConsEnd /STK=2 /UG=Rn.43480 /UG_TITLE=ESTs BI275651 1379670_at BF289778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289778 /DB_XREF=gi:11220848 /DB_XREF=EST454369 /CLONE=RGIHK91 /FEA=EST /CNT=4 /TID=Rn.55827.1 /TIER=ConsEnd /STK=2 /UG=Rn.55827 /UG_TITLE=ESTs BF289778 shugoshin-like 2 (S. pombe) Sgol2 316425 XM_001068385 /// XM_237176 0008104 // protein localization // not recorded /// 0051754 // meiotic sister chromatid cohesion, centromeric // not recorded 0000775 // chromosome, centromeric region // not recorded /// 0000776 // kinetochore // not recorded /// 0000780 // condensed nuclear chromosome, centromeric region // not recorded /// 0030892 // mitotic cohesin complex // not recorded 0005515 // protein binding // not recorded 1379671_at BE095923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095923 /DB_XREF=gi:8486854 /DB_XREF=UI-R-BU0-apd-c-03-0-UI.s1 /CLONE=UI-R-BU0-apd-c-03-0-UI /FEA=EST /CNT=4 /TID=Rn.41188.1 /TIER=ConsEnd /STK=2 /UG=Rn.41188 /UG_TITLE=ESTs BE095923 major facilitator superfamily domain containing 1 Mfsd1 361957 NM_001191847 /// XM_001061558 /// XM_342258 0055085 // transmembrane transport // inferred from electronic annotation 1379672_at AI103938 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103938 /DB_XREF=gi:3704875 /DB_XREF=EST213227 /CLONE=RHEBV36 /FEA=EST /CNT=4 /TID=Rn.27953.1 /TIER=ConsEnd /STK=2 /UG=Rn.27953 /UG_TITLE=ESTs AI103938 1379673_at AI230747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230747 /DB_XREF=gi:3814634 /DB_XREF=EST227442 /CLONE=REMDA72 /FEA=EST /CNT=4 /TID=Rn.20039.1 /TIER=ConsEnd /STK=2 /UG=Rn.20039 /UG_TITLE=ESTs AI230747 UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 Uap1l1 296560 NM_001134516 0008152 // metabolic process // inferred from electronic annotation 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1379674_at BE115481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115481 /DB_XREF=gi:8507586 /DB_XREF=UI-R-BS1-axw-d-03-0-UI.s1 /CLONE=UI-R-BS1-axw-d-03-0-UI /FEA=EST /CNT=4 /TID=Rn.48877.1 /TIER=ConsEnd /STK=2 /UG=Rn.48877 /UG_TITLE=ESTs BE115481 core-binding factor, runt domain, alpha subunit 2; translocated to, 3 Cbfa2t3 361431 NM_001108453 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0030851 // granulocyte differentiation // not recorded 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379675_at BF402435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402435 /DB_XREF=gi:11390410 /DB_XREF=UI-R-CA0-bhp-b-12-0-UI.s1 /CLONE=UI-R-CA0-bhp-b-12-0-UI /FEA=EST /CNT=4 /TID=Rn.59941.1 /TIER=ConsEnd /STK=2 /UG=Rn.59941 /UG_TITLE=ESTs BF402435 1379676_a_at AW527320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527320 /DB_XREF=gi:7169734 /DB_XREF=UI-R-BO1-ajs-h-12-0-UI.s1 /CLONE=UI-R-BO1-ajs-h-12-0-UI /FEA=EST /CNT=1 /TID=Rn.23986.2 /TIER=ConsEnd /STK=1 /UG=Rn.23986 /UG_TITLE=ESTs, Weakly similar to DRNG RAT DEOXYRIBONUCLEASE GAMMA PRECURSOR (R.norvegicus) AW527320 deoxyribonuclease 1-like 1 Dnase1l1 363522 NM_001014223 0006308 // DNA catabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004536 // deoxyribonuclease activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1379677_at BF286267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF286267 /DB_XREF=gi:11217337 /DB_XREF=EST450858 /CLONE=RGIFN63 /FEA=EST /CNT=4 /TID=Rn.24336.1 /TIER=ConsEnd /STK=2 /UG=Rn.24336 /UG_TITLE=ESTs BF286267 tumor necrosis factor (ligand) superfamily, member 13 Tnfsf13 287437 NM_001009623 0002426 // immunoglobulin production in mucosal tissue // not recorded /// 0002636 // positive regulation of germinal center formation // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0016064 // immunoglobulin mediated immune response // not recorded /// 0048298 // positive regulation of isotype switching to IgA isotypes // not recorded /// 0050776 // regulation of immune response // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379678_at AI547695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547695 /DB_XREF=gi:4465183 /DB_XREF=UI-R-C3-th-d-01-0-UI.s1 /CLONE=UI-R-C3-th-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.44103.1 /TIER=ConsEnd /STK=2 /UG=Rn.44103 /UG_TITLE=ESTs, Moderately similar to HM21_HUMAN HIGH-MOBILITY GROUP PROTEIN 2-LIKE 1 (HMGBCG PROTEIN) (H.sapiens) AI547695 HMG box domain containing 4 Hmgxb4 307667 NM_001107412 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1379679_at BF290584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290584 /DB_XREF=gi:11221654 /DB_XREF=EST455175 /CLONE=RGIHW78 /FEA=EST /CNT=4 /TID=Rn.55946.1 /TIER=ConsEnd /STK=2 /UG=Rn.55946 /UG_TITLE=ESTs BF290584 1379680_at AI030284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030284 /DB_XREF=gi:3248110 /DB_XREF=UI-R-C0-jb-b-06-0-UI.s1 /CLONE=UI-R-C0-jb-b-06-0-UI /FEA=EST /CNT=4 /TID=Rn.16289.1 /TIER=ConsEnd /STK=2 /UG=Rn.16289 /UG_TITLE=ESTs AI030284 1379681_at BM385612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385612 /DB_XREF=gi:18185665 /DB_XREF=UI-R-DM1-ckd-j-21-0-UI.s1 /CLONE=UI-R-DM1-ckd-j-21-0-UI /FEA=EST /CNT=4 /TID=Rn.39367.1 /TIER=ConsEnd /STK=2 /UG=Rn.39367 /UG_TITLE=ESTs BM385612 tetratricopeptide repeat domain 22 Ttc22 298300 NM_001106671 0005488 // binding // inferred from electronic annotation 1379682_at BI281668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281668 /DB_XREF=gi:14931636 /DB_XREF=UI-R-CT0s-cav-a-12-0-UI.s1 /CLONE=UI-R-CT0s-cav-a-12-0-UI /FEA=EST /CNT=4 /TID=Rn.22843.1 /TIER=ConsEnd /STK=2 /UG=Rn.22843 /UG_TITLE=ESTs BI281668 1379683_at BG378155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378155 /DB_XREF=gi:13302627 /DB_XREF=UI-R-CV1-bvo-f-04-0-UI.s1 /CLONE=UI-R-CV1-bvo-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.24072.1 /TIER=ConsEnd /STK=2 /UG=Rn.24072 /UG_TITLE=ESTs BG378155 transmembrane protein 136 Tmem136 315593 NM_001108136 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1379684_at BG380889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380889 /DB_XREF=gi:13305361 /DB_XREF=UI-R-CT0-buc-f-02-0-UI.s1 /CLONE=UI-R-CT0-buc-f-02-0-UI /FEA=EST /CNT=4 /TID=Rn.28595.1 /TIER=ConsEnd /STK=2 /UG=Rn.28595 /UG_TITLE=ESTs BG380889 1379685_at AI502753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502753 /DB_XREF=gi:4400604 /DB_XREF=UI-R-C1-lb-d-09-0-UI.s1 /CLONE=UI-R-C1-lb-d-09-0-UI /FEA=EST /CNT=4 /TID=Rn.10531.1 /TIER=ConsEnd /STK=2 /UG=Rn.10531 /UG_TITLE=ESTs, Highly similar to SRA4 RAT CTD-BINDING SR-LIKE PROTEIN RA4 (R.norvegicus) AI502753 splicing factor, arginine/serine-rich 15 Sfrs15 245924 NM_001037347 0006397 // mRNA processing // inferred from mutant phenotype 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction 1379686_at AI170880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170880 /DB_XREF=gi:3710920 /DB_XREF=EST216821 /CLONE=RMUBC91 /FEA=EST /CNT=4 /TID=Rn.25239.1 /TIER=ConsEnd /STK=2 /UG=Rn.25239 /UG_TITLE=ESTs AI170880 splA/ryanodine receptor domain and SOCS box containing 3 Spsb3 302981 NM_001106988 0023034 // intracellular signaling pathway // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1379687_at AI501579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501579 /DB_XREF=gi:4399430 /DB_XREF=UI-R-C2p-sc-g-10-0-UI.s1 /CLONE=UI-R-C2p-sc-g-10-0-UI /FEA=EST /CNT=4 /TID=Rn.35532.1 /TIER=ConsEnd /STK=2 /UG=Rn.35532 /UG_TITLE=ESTs, Weakly similar to T24851 hypothetical protein T11G6.8 - Caenorhabditis elegans (C.elegans) AI501579 0005515 // protein binding // inferred from electronic annotation 1379688_at BM389813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389813 /DB_XREF=gi:18189866 /DB_XREF=UI-R-CN1-cjp-h-23-0-UI.s1 /CLONE=UI-R-CN1-cjp-h-23-0-UI /FEA=EST /CNT=4 /TID=Rn.18546.1 /TIER=ConsEnd /STK=2 /UG=Rn.18546 /UG_TITLE=ESTs BM389813 1379689_at AI011930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011930 /DB_XREF=gi:3225762 /DB_XREF=EST206381 /CLONE=RPLAQ59 /FEA=EST /CNT=4 /TID=Rn.24531.1 /TIER=ConsEnd /STK=2 /UG=Rn.24531 /UG_TITLE=ESTs AI011930 Ring finger and CCCH-type zinc finger domains 2 Rc3h2 311909 NM_001107839 0005624 // membrane fraction // not recorded /// 0009986 // cell surface // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379690_at BF420785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420785 /DB_XREF=gi:11408774 /DB_XREF=UI-R-BJ2-bqa-b-11-0-UI.s1 /CLONE=UI-R-BJ2-bqa-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.22913.1 /TIER=ConsEnd /STK=2 /UG=Rn.22913 /UG_TITLE=ESTs BF420785 1379691_at BM389372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389372 /DB_XREF=gi:18189425 /DB_XREF=UI-R-CN1-cjk-e-11-0-UI.s1 /CLONE=UI-R-CN1-cjk-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.54328.1 /TIER=ConsEnd /STK=2 /UG=Rn.54328 /UG_TITLE=ESTs, Weakly similar to RDP MOUSE RD PROTEIN (M.musculus) BM389372 PRP38 pre-mRNA processing factor 38 (yeast) domain containing B Prpf38b 499691 NM_001024305 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation 1379692_at AI408289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408289 /DB_XREF=gi:4251793 /DB_XREF=EST236579 /CLONE=ROVEI08 /FEA=EST /CNT=4 /TID=Rn.17864.1 /TIER=ConsEnd /STK=2 /UG=Rn.17864 /UG_TITLE=ESTs AI408289 CD22 molecule Cd22 308501 NM_001107503 0005887 // integral to plasma membrane // not recorded /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1379693_at AI409154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409154 /DB_XREF=gi:4252658 /DB_XREF=EST237446 /CLONE=RKIDR82 /FEA=EST /CNT=4 /TID=Rn.44052.1 /TIER=ConsEnd /STK=2 /UG=Rn.44052 /UG_TITLE=ESTs AI409154 roundabout, axon guidance receptor, homolog 2 (Drosophila) Robo2 84409 NM_032106 0001554 // luteolysis // not recorded /// 0001656 // metanephros development // not recorded /// 0001656 // metanephros development // inferred from sequence or structural similarity /// 0001657 // ureteric bud development // not recorded /// 0001657 // ureteric bud development // inferred from sequence or structural similarity /// 0007156 // homophilic cell adhesion // not recorded /// 0007156 // homophilic cell adhesion // inferred from sequence or structural similarity /// 0007411 // axon guidance // inferred from direct assay /// 0007411 // axon guidance // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from sequence or structural similarity /// 0016199 // axon midline choice point recognition // inferred from expression pattern /// 0021510 // spinal cord development // inferred from expression pattern /// 0021891 // olfactory bulb interneuron development // inferred from sequence or structural similarity /// 0031290 // retinal ganglion cell axon guidance // inferred from sequence or structural similarity /// 0032870 // cellular response to hormone stimulus // not recorded /// 0048814 // regulation of dendrite morphogenesis // inferred from mutant phenotype /// 0050772 // positive regulation of axonogenesis // not recorded /// 0050772 // positive regulation of axonogenesis // inferred from sequence or structural similarity /// 0050925 // negative regulation of negative chemotaxis // not recorded 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0030673 // axolemma // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008046 // axon guidance receptor activity // inferred from direct assay /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // not recorded 1379694_at AI171596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171596 /DB_XREF=gi:3711636 /DB_XREF=EST217563 /CLONE=RMUBN01 /FEA=EST /CNT=4 /TID=Rn.80830.1 /TIER=ConsEnd /STK=2 /UG=Rn.80830 /UG_TITLE=ESTs AI171596 Enhancer of polycomb homolog 2 (Drosophila) Epc2 362132 NM_001108581 1379695_at AW915505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915505 /DB_XREF=gi:8081203 /DB_XREF=EST346809 /CLONE=RGICW15 /FEA=EST /CNT=4 /TID=Rn.19318.1 /TIER=ConsEnd /STK=2 /UG=Rn.19318 /UG_TITLE=ESTs AW915505 1379696_at BI291833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291833 /DB_XREF=gi:14951761 /DB_XREF=UI-R-DN0-cit-l-20-0-UI.s1 /CLONE=UI-R-DN0-cit-l-20-0-UI /FEA=EST /CNT=4 /TID=Rn.40249.1 /TIER=ConsEnd /STK=2 /UG=Rn.40249 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BI291833 1379697_at AW531088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531088 /DB_XREF=gi:7173502 /DB_XREF=UI-R-C4-alg-e-09-0-UI.s1 /CLONE=UI-R-C4-alg-e-09-0-UI /FEA=EST /CNT=4 /TID=Rn.46561.1 /TIER=ConsEnd /STK=2 /UG=Rn.46561 /UG_TITLE=ESTs AW531088 1379698_at AI178631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178631 /DB_XREF=gi:3729269 /DB_XREF=EST222311 /CLONE=RPLCT62 /FEA=EST /CNT=4 /TID=Rn.22530.1 /TIER=ConsEnd /STK=2 /UG=Rn.22530 /UG_TITLE=ESTs AI178631 1379699_at AI549388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549388 /DB_XREF=gi:4466876 /DB_XREF=UI-R-C3-ua-b-09-0-UI.s1 /CLONE=UI-R-C3-ua-b-09-0-UI /FEA=EST /CNT=4 /TID=Rn.29199.1 /TIER=ConsEnd /STK=2 /UG=Rn.29199 /UG_TITLE=ESTs AI549388 1379700_at AA956376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956376 /DB_XREF=gi:4238850 /DB_XREF=UI-R-E1-fg-d-07-0-UI.s2 /CLONE=UI-R-E1-fg-d-07-0-UI /FEA=EST /CNT=4 /TID=Rn.23111.1 /TIER=ConsEnd /STK=2 /UG=Rn.23111 /UG_TITLE=ESTs AA956376 1379701_at AW143987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143987 /DB_XREF=gi:6163886 /DB_XREF=EST294283 /CLONE=RGICE46 /FEA=EST /CNT=4 /TID=Rn.23687.1 /TIER=ConsEnd /STK=2 /UG=Rn.23687 /UG_TITLE=ESTs AW143987 1379702_at AI410993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410993 /DB_XREF=gi:4254497 /DB_XREF=EST239287 /CLONE=RKIEE72 /FEA=EST /CNT=4 /TID=Rn.14735.1 /TIER=ConsEnd /STK=2 /UG=Rn.14735 /UG_TITLE=ESTs AI410993 ankyrin repeat and MYND domain containing 2 Ankmy2 314046 NM_001108019 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379703_at BF288207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288207 /DB_XREF=gi:11219277 /DB_XREF=EST452798 /CLONE=RGIGQ90 /FEA=EST /CNT=4 /TID=Rn.43070.1 /TIER=ConsEnd /STK=2 /UG=Rn.43070 /UG_TITLE=ESTs BF288207 DENN/MADD domain containing 3 Dennd3 315055 XM_001072997 /// XM_235398 1379704_at BM383283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383283 /DB_XREF=gi:18183336 /DB_XREF=UI-R-DS0-cje-k-22-0-UI.s1 /CLONE=UI-R-DS0-cje-k-22-0-UI /FEA=EST /CNT=4 /TID=Rn.76204.1 /TIER=ConsEnd /STK=2 /UG=Rn.76204 /UG_TITLE=ESTs BM383283 zinc finger protein 143 Zfp143 361627 NM_001012169 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379705_at AI511060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511060 /DB_XREF=gi:4416759 /DB_XREF=UI-R-C2p-od-h-11-0-UI.s1 /CLONE=UI-R-C2p-od-h-11-0-UI /FEA=EST /CNT=4 /TID=Rn.34616.1 /TIER=ConsEnd /STK=2 /UG=Rn.34616 /UG_TITLE=ESTs AI511060 1379706_at BF400686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400686 /DB_XREF=gi:11388661 /DB_XREF=UI-R-CA0-bhe-c-08-0-UI.s1 /CLONE=UI-R-CA0-bhe-c-08-0-UI /FEA=EST /CNT=4 /TID=Rn.59618.1 /TIER=ConsEnd /STK=2 /UG=Rn.59618 /UG_TITLE=ESTs BF400686 1379707_at BF284363 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284363 /DB_XREF=gi:11215433 /DB_XREF=EST448954 /CLONE=RGIEO73 /FEA=EST /CNT=4 /TID=Rn.28427.1 /TIER=ConsEnd /STK=2 /UG=Rn.28427 /UG_TITLE=ESTs BF284363 1379708_at BG381298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381298 /DB_XREF=gi:13305770 /DB_XREF=UI-R-CT0-bui-e-09-0-UI.s1 /CLONE=UI-R-CT0-bui-e-09-0-UI /FEA=EST /CNT=4 /TID=Rn.34637.1 /TIER=ConsEnd /STK=2 /UG=Rn.34637 /UG_TITLE=ESTs BG381298 1379709_at AI599514 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599514 /DB_XREF=gi:4608562 /DB_XREF=EST251217 /CLONE=REMEO61 /FEA=EST /CNT=4 /TID=Rn.33368.1 /TIER=ConsEnd /STK=2 /UG=Rn.33368 /UG_TITLE=ESTs, Moderately similar to THROMBOXANE-A SYNTHASE (R.norvegicus) AI599514 keratin associated protein 14 like Krtap14l 363739 XM_344003 1379710_at BE108372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108372 /DB_XREF=gi:8500477 /DB_XREF=UI-R-BS1-ayv-e-07-0-UI.s1 /CLONE=UI-R-BS1-ayv-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.18354.1 /TIER=ConsEnd /STK=2 /UG=Rn.18354 /UG_TITLE=ESTs BE108372 1379711_at BE107458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107458 /DB_XREF=gi:8499563 /DB_XREF=UI-R-BS1-ayt-h-07-0-UI.s1 /CLONE=UI-R-BS1-ayt-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.22536.1 /TIER=ConsEnd /STK=2 /UG=Rn.22536 /UG_TITLE=ESTs BE107458 1379712_at BF408872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408872 /DB_XREF=gi:11396847 /DB_XREF=UI-R-BS2-bet-d-04-0-UI.s1 /CLONE=UI-R-BS2-bet-d-04-0-UI /FEA=EST /CNT=4 /TID=Rn.64066.1 /TIER=ConsEnd /STK=2 /UG=Rn.64066 /UG_TITLE=ESTs BF408872 1379713_at AI233396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233396 /DB_XREF=gi:3817276 /DB_XREF=EST230084 /CLONE=RKIDE52 /FEA=EST /CNT=4 /TID=Rn.23272.1 /TIER=ConsEnd /STK=2 /UG=Rn.23272 /UG_TITLE=ESTs AI233396 1379714_at AI230650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230650 /DB_XREF=gi:4135574 /DB_XREF=EST227345 /CLONE=REMCZ49 /FEA=EST /CNT=4 /TID=Rn.37162.1 /TIER=ConsEnd /STK=2 /UG=Rn.37162 /UG_TITLE=ESTs AI230650 1379715_at BE115506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115506 /DB_XREF=gi:8507611 /DB_XREF=UI-R-BS1-axw-f-08-0-UI.s1 /CLONE=UI-R-BS1-axw-f-08-0-UI /FEA=EST /CNT=4 /TID=Rn.50594.1 /TIER=ConsEnd /STK=2 /UG=Rn.50594 /UG_TITLE=ESTs, Weakly similar to PHD-finger. (Caenorhabditis elegans) (C.elegans) BE115506 similar to CG9346-PA RGD1307882 315903 XM_001065014 /// XM_002727119 /// XM_002729954 /// XM_236501 0006396 // RNA processing // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1379716_at AA956555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956555 /DB_XREF=gi:4239029 /DB_XREF=UI-R-E1-fn-h-09-0-UI.s1 /CLONE=UI-R-E1-fn-h-09-0-UI /FEA=EST /CNT=4 /TID=Rn.8158.1 /TIER=ConsEnd /STK=2 /UG=Rn.8158 /UG_TITLE=ESTs AA956555 1379717_at BM385804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385804 /DB_XREF=gi:18185857 /DB_XREF=UI-R-CN1-clx-l-16-0-UI.s1 /CLONE=UI-R-CN1-clx-l-16-0-UI /FEA=EST /CNT=4 /TID=Rn.36147.1 /TIER=ConsEnd /STK=2 /UG=Rn.36147 /UG_TITLE=ESTs BM385804 similar to ATP-binding cassette, sub-family G (WHITE), member 3 LOC360997 360997 NM_001037205 0016020 // membrane // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation 1379718_at BE102205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102205 /DB_XREF=gi:8494304 /DB_XREF=UI-R-BT1-aqf-g-02-0-UI.s1 /CLONE=UI-R-BT1-aqf-g-02-0-UI /FEA=EST /CNT=4 /TID=Rn.60507.1 /TIER=ConsEnd /STK=2 /UG=Rn.60507 /UG_TITLE=ESTs BE102205 amyloid beta (A4) precursor-like protein 2-like LOC100363366 100363366 XM_002729883 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1379719_at AI408386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408386 /DB_XREF=gi:4251890 /DB_XREF=EST236676 /CLONE=ROVEP69 /FEA=EST /CNT=4 /TID=Rn.42991.1 /TIER=ConsEnd /STK=2 /UG=Rn.42991 /UG_TITLE=ESTs AI408386 1379720_at AW528715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528715 /DB_XREF=gi:7171129 /DB_XREF=UI-R-BO1-ajo-e-05-0-UI.s1 /CLONE=UI-R-BO1-ajo-e-05-0-UI /FEA=EST /CNT=4 /TID=Rn.46981.1 /TIER=ConsEnd /STK=2 /UG=Rn.46981 /UG_TITLE=ESTs AW528715 1379721_at AA997421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997421 /DB_XREF=gi:4283433 /DB_XREF=UI-R-C0-hr-f-08-0-UI.s1 /CLONE=UI-R-C0-hr-f-08-0-UI /FEA=EST /CNT=4 /TID=Rn.49251.1 /TIER=ConsEnd /STK=2 /UG=Rn.49251 /UG_TITLE=ESTs AA997421 similar to 2310047B19Rik protein RGD1308026 363029 NM_001108755 1379722_at BF387136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387136 /DB_XREF=gi:11371960 /DB_XREF=UI-R-CA1-bbq-a-03-0-UI.s1 /CLONE=UI-R-CA1-bbq-a-03-0-UI /FEA=EST /CNT=4 /TID=Rn.64295.1 /TIER=ConsEnd /STK=2 /UG=Rn.64295 /UG_TITLE=ESTs BF387136 1379723_at BG673264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG673264 /DB_XREF=gi:13895363 /DB_XREF=DRNBRC09 /CLONE=DRNBRC09 /FEA=EST /CNT=4 /TID=Rn.35776.1 /TIER=ConsEnd /STK=2 /UG=Rn.35776 /UG_TITLE=ESTs BG673264 Similar to tyrosine kinase-associated leucine zipper protein LAZipII RGD1565584 293112 NM_001106279 0006350 // transcription // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0009615 // response to virus // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0045814 // negative regulation of gene expression, epigenetic // not recorded /// 0051090 // regulation of transcription factor activity // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1379724_at BE103244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103244 /DB_XREF=gi:8495343 /DB_XREF=UI-R-BX0-aqy-c-12-0-UI.s1 /CLONE=UI-R-BX0-aqy-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.19849.1 /TIER=ConsEnd /STK=2 /UG=Rn.19849 /UG_TITLE=ESTs BE103244 pleckstrin homology-like domain, family B, member 2 Phldb2 685611 XM_001064525 1379725_at AW920459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920459 /DB_XREF=gi:8086270 /DB_XREF=EST351763 /CLONE=RGIGW54 /FEA=EST /CNT=4 /TID=Rn.28951.1 /TIER=ConsEnd /STK=2 /UG=Rn.28951 /UG_TITLE=ESTs AW920459 1379726_at AI412925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412925 /DB_XREF=gi:4256429 /DB_XREF=EST241225 /CLONE=RKIEG68 /FEA=EST /CNT=4 /TID=Rn.43467.1 /TIER=ConsEnd /STK=2 /UG=Rn.43467 /UG_TITLE=ESTs, Weakly similar to PBX2 MOUSE PRE-B-CELL LEUKEMIA TRANSCRIPTION FACTOR-2 (M.musculus) AI412925 pre-B-cell leukemia homeobox 4 Pbx4 361131 NM_001108399 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0001741 // XY body // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1379727_at AI598320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598320 /DB_XREF=gi:4607368 /DB_XREF=EST250023 /CLONE=REMDO23 /FEA=EST /CNT=4 /TID=Rn.24864.1 /TIER=ConsEnd /STK=2 /UG=Rn.24864 /UG_TITLE=ESTs, Weakly similar to YNH2_CAEEL HYPOTHETICAL 31.0 KD PROTEIN R107.2 IN CHROMOSOME III (C.elegans) AI598320 1379728_at BF412014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412014 /DB_XREF=gi:11400003 /DB_XREF=UI-R-BT1-bms-d-03-0-UI.s1 /CLONE=UI-R-BT1-bms-d-03-0-UI /FEA=EST /CNT=4 /TID=Rn.29024.1 /TIER=ConsEnd /STK=2 /UG=Rn.29024 /UG_TITLE=ESTs BF412014 poly(A) binding protein, cytoplasmic 1 Pabpc1 171350 NM_134353 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0008143 // poly(A) RNA binding // not recorded /// 0008143 // poly(A) RNA binding // inferred from sequence or structural similarity 1379729_at AI071906 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071906 /DB_XREF=gi:3398121 /DB_XREF=UI-R-C2-mz-f-02-0-UI.s1 /CLONE=UI-R-C2-mz-f-02-0-UI /FEA=EST /CNT=4 /TID=Rn.20028.1 /TIER=ConsEnd /STK=2 /UG=Rn.20028 /UG_TITLE=ESTs AI071906 cleavage and polyadenylation specific factor 6 Cpsf6 299811 NM_001106785 0006397 // mRNA processing // not recorded 0005849 // mRNA cleavage factor complex // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0042382 // paraspeckles // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // not recorded 1379730_at AA942681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA942681 /DB_XREF=gi:3102597 /DB_XREF=EST198180 /CLONE=RBRAA15 /FEA=EST /CNT=4 /TID=Rn.21454.1 /TIER=ConsEnd /STK=2 /UG=Rn.21454 /UG_TITLE=ESTs, Highly similar to VATH_HUMAN VACUOLAR ATP SYNTHASE SUBUNIT H (V-ATPASE H SUBUNIT) (VACUOLAR PROTON PUMP H SUBUNIT) (V-ATPASE 5057 KDA SUBUNITS) (VACUOLAR PROTON PUMP SUBUNIT SFD) (PROTEIN CGI-11) (H.sapiens) AA942681 ATPase, H+ transporting, lysosomal V1 subunit H Atp6v1h 297797 NM_001013929 0006897 // endocytosis // not recorded /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0050690 // regulation of defense response to virus by virus // not recorded 0000221 // vacuolar proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 1379731_at BG666613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666613 /DB_XREF=gi:13888535 /DB_XREF=DRABPG04 /CLONE=DRABPG04 /FEA=EST /CNT=4 /TID=Rn.18738.1 /TIER=ConsEnd /STK=2 /UG=Rn.18738 /UG_TITLE=ESTs, Weakly similar to CD59 GLYCOPROTEIN PRECURSOR (R.norvegicus) BG666613 pogo transposable element with KRAB domain Pogk 304941 NM_001107194 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation 1379732_at AW920037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920037 /DB_XREF=gi:8085843 /DB_XREF=EST351341 /CLONE=RGIGP93 /FEA=EST /CNT=4 /TID=Rn.52178.1 /TIER=ConsEnd /STK=2 /UG=Rn.52178 /UG_TITLE=ESTs AW920037 syntaxin 11 Stx11 292483 NM_001025638 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1379733_at BF396474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396474 /DB_XREF=gi:11381448 /DB_XREF=UI-R-BS2-bdy-e-12-0-UI.s1 /CLONE=UI-R-BS2-bdy-e-12-0-UI /FEA=EST /CNT=4 /TID=Rn.58609.1 /TIER=ConsEnd /STK=2 /UG=Rn.58609 /UG_TITLE=ESTs BF396474 1379734_at AI502132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502132 /DB_XREF=gi:4399983 /DB_XREF=UI-R-C2p-rx-e-02-0-UI.s2 /CLONE=UI-R-C2p-rx-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.26778.1 /TIER=ConsEnd /STK=2 /UG=Rn.26778 /UG_TITLE=ESTs AI502132 synaptophysin-like 2 Sypl2 362018 NM_001108563 0006810 // transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1379735_at AA850836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850836 /DB_XREF=gi:2938376 /DB_XREF=EST193604 /CLONE=ROVAL36 /FEA=EST /CNT=4 /TID=Rn.49974.1 /TIER=ConsEnd /STK=2 /UG=Rn.49974 /UG_TITLE=ESTs AA850836 1379736_at AI232440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232440 /DB_XREF=gi:3816320 /DB_XREF=EST229128 /CLONE=RKICB70 /FEA=EST /CNT=4 /TID=Rn.24643.1 /TIER=ConsEnd /STK=2 /UG=Rn.24643 /UG_TITLE=ESTs, Weakly similar to T46915 hypothetical protein DKFZp762A227.1 (H.sapiens) AI232440 solute carrier family 43, member 2 Slc43a2 287532 NM_001105812 0003333 // amino acid transmembrane transport // not recorded /// 0006865 // amino acid transport // not recorded /// 0015807 // L-amino acid transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // not recorded 0015171 // amino acid transmembrane transporter activity // not recorded /// 0015179 // L-amino acid transmembrane transporter activity // not recorded 1379737_a_at BG372903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372903 /DB_XREF=gi:13269440 /DB_XREF=UI-R-CV1-bru-c-07-0-UI.s1 /CLONE=UI-R-CV1-bru-c-07-0-UI /FEA=EST /CNT=4 /TID=Rn.8555.1 /TIER=ConsEnd /STK=2 /UG=Rn.8555 /UG_TITLE=ESTs, Highly similar to I55595 splicing factor (H.sapiens) BG372903 RNA binding motif protein 39 Rbm39 362251 NM_001013207 0006397 // mRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379738_at AI007726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI007726 /DB_XREF=gi:3221558 /DB_XREF=EST202177 /CLONE=RBRAT65 /FEA=EST /CNT=4 /TID=Rn.21509.1 /TIER=ConsEnd /STK=2 /UG=Rn.21509 /UG_TITLE=ESTs AI007726 1379739_at BF408431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408431 /DB_XREF=gi:11396406 /DB_XREF=UI-R-BJ2-brc-f-07-0-UI.s1 /CLONE=UI-R-BJ2-brc-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.25345.1 /TIER=ConsEnd /STK=2 /UG=Rn.25345 /UG_TITLE=ESTs BF408431 1379740_at AW521797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521797 /DB_XREF=gi:7164182 /DB_XREF=UI-R-BO0-agr-h-03-0-UI.s1 /CLONE=UI-R-BO0-agr-h-03-0-UI /FEA=EST /CNT=4 /TID=Rn.6657.1 /TIER=ConsEnd /STK=2 /UG=Rn.6657 /UG_TITLE=ESTs AW521797 Similar to chromosome 18 open reading frame 54 LOC361346 361346 NM_001017462 0005576 // extracellular region // inferred from electronic annotation 1379741_at BG377116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377116 /DB_XREF=gi:13301628 /DB_XREF=UI-R-CU0-bvb-b-05-0-UI.s1 /CLONE=UI-R-CU0-bvb-b-05-0-UI /FEA=EST /CNT=4 /TID=Rn.39307.1 /TIER=ConsEnd /STK=2 /UG=Rn.39307 /UG_TITLE=ESTs BG377116 ATPase, H+ transporting, lysosomal V0 subunit A4 Atp6v0a4 296981 NM_001106591 0001503 // ossification // not recorded /// 0006885 // regulation of pH // not recorded /// 0007588 // excretion // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015991 // ATP hydrolysis coupled proton transport // not recorded /// 0015992 // proton transport // not recorded 0005768 // endosome // not recorded /// 0005886 // plasma membrane // not recorded /// 0005903 // brush border // not recorded /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016471 // vacuolar proton-transporting V-type ATPase complex // not recorded /// 0031526 // brush border membrane // not recorded /// 0033177 // proton-transporting two-sector ATPase complex, proton-transporting domain // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from direct assay /// 0045177 // apical part of cell // not recorded 0005515 // protein binding // not recorded /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0051117 // ATPase binding // not recorded 1379742_at BI301216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301216 /DB_XREF=gi:14977496 /DB_XREF=UI-R-DK0-cek-a-05-0-UI.s2 /CLONE=UI-R-DK0-cek-a-05-0-UI /FEA=EST /CNT=4 /TID=Rn.79720.1 /TIER=ConsEnd /STK=2 /UG=Rn.79720 /UG_TITLE=ESTs, Weakly similar to LY10_HUMAN LYSP100 PROTEIN (H.sapiens) BI301216 1379743_at BF397271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397271 /DB_XREF=gi:11382254 /DB_XREF=UI-R-BS2-bek-d-08-0-UI.s1 /CLONE=UI-R-BS2-bek-d-08-0-UI /FEA=EST /CNT=4 /TID=Rn.42141.1 /TIER=ConsEnd /STK=2 /UG=Rn.42141 /UG_TITLE=ESTs BF397271 Nucleotide binding protein 2 Nubp2 287125 NM_001011891 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 1379744_at AI137930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137930 /DB_XREF=gi:3638707 /DB_XREF=UI-R-A1-ds-h-12-0-UI.s1 /CLONE=UI-R-A1-ds-h-12-0-UI /FEA=EST /CNT=4 /TID=Rn.25066.1 /TIER=ConsEnd /STK=2 /UG=Rn.25066 /UG_TITLE=ESTs AI137930 serum amyloid A4, constitutive Saa4 365245 NM_001009478 0006953 // acute-phase response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0034364 // high-density lipoprotein particle // inferred from electronic annotation 1379745_at AI102041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102041 /DB_XREF=gi:4134051 /DB_XREF=EST211330 /CLONE=RBRBY25 /FEA=EST /CNT=4 /TID=Rn.18828.1 /TIER=ConsEnd /STK=2 /UG=Rn.18828 /UG_TITLE=ESTs AI102041 ring finger protein 165 Rnf165 307251 NM_001164505 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379746_at AI101685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101685 /DB_XREF=gi:3706555 /DB_XREF=EST210974 /CLONE=RBRBT77 /FEA=EST /CNT=4 /TID=Rn.23800.1 /TIER=ConsEnd /STK=2 /UG=Rn.23800 /UG_TITLE=ESTs, Weakly similar to T17365 serinethreonine protein kinase TAO1 - rat (R.norvegicus) AI101685 TAO kinase 3 Taok3 304530 NM_001024254 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000165 // MAPKKK cascade // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // not recorded /// 0046330 // positive regulation of JNK cascade // inferred from electronic annotation /// 0046330 // positive regulation of JNK cascade // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016740 // transferase activity // not recorded 1379747_at AA866443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866443 /DB_XREF=gi:4230661 /DB_XREF=UI-R-E0-ch-g-06-0-UI.s1 /CLONE=UI-R-E0-ch-g-06-0-UI /FEA=EST /CNT=4 /TID=Rn.22637.1 /TIER=ConsEnd /STK=2 /UG=Rn.22637 /UG_TITLE=ESTs AA866443 Protease, serine, 35 Prss35 315866 NM_001008560 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation 1379748_at AA819629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819629 /DB_XREF=gi:4227966 /DB_XREF=UI-R-A0-an-e-04-0-UI.s1 /CLONE=UI-R-A0-an-e-04-0-UI /FEA=EST /CNT=4 /TID=Rn.16644.1 /TIER=ConsEnd /STK=2 /UG=Rn.16644 /UG_TITLE=ESTs AA819629 Interferon-induced protein 44-like Ifi44l 310968 XM_001079914 /// XM_227820 0006955 // immune response // not recorded 1379749_at AI230509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230509 /DB_XREF=gi:3814396 /DB_XREF=EST227204 /CLONE=REMCX43 /FEA=EST /CNT=4 /TID=Rn.24510.1 /TIER=ConsEnd /STK=2 /UG=Rn.24510 /UG_TITLE=ESTs AI230509 1379750_at BE119799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119799 /DB_XREF=gi:8511904 /DB_XREF=UI-R-CA0-ban-b-08-0-UI.s1 /CLONE=UI-R-CA0-ban-b-08-0-UI /FEA=EST /CNT=4 /TID=Rn.24350.1 /TIER=ConsEnd /STK=2 /UG=Rn.24350 /UG_TITLE=ESTs, Moderately similar to roundabout homolog 1 (Drosophila) (Rattus norvegicus) (R.norvegicus) BE119799 roundabout, axon guidance receptor, homolog 2 (Drosophila) Robo2 84409 NM_032106 0001554 // luteolysis // not recorded /// 0001656 // metanephros development // not recorded /// 0001656 // metanephros development // inferred from sequence or structural similarity /// 0001657 // ureteric bud development // not recorded /// 0001657 // ureteric bud development // inferred from sequence or structural similarity /// 0007156 // homophilic cell adhesion // not recorded /// 0007156 // homophilic cell adhesion // inferred from sequence or structural similarity /// 0007411 // axon guidance // inferred from direct assay /// 0007411 // axon guidance // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from sequence or structural similarity /// 0016199 // axon midline choice point recognition // inferred from expression pattern /// 0021510 // spinal cord development // inferred from expression pattern /// 0021891 // olfactory bulb interneuron development // inferred from sequence or structural similarity /// 0031290 // retinal ganglion cell axon guidance // inferred from sequence or structural similarity /// 0032870 // cellular response to hormone stimulus // not recorded /// 0048814 // regulation of dendrite morphogenesis // inferred from mutant phenotype /// 0050772 // positive regulation of axonogenesis // not recorded /// 0050772 // positive regulation of axonogenesis // inferred from sequence or structural similarity /// 0050925 // negative regulation of negative chemotaxis // not recorded 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0030673 // axolemma // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008046 // axon guidance receptor activity // inferred from direct assay /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // not recorded 1379751_at BF554367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554367 /DB_XREF=gi:11664097 /DB_XREF=UI-R-C0-hw-c-11-0-UI.r1 /CLONE=UI-R-C0-hw-c-11-0-UI /FEA=EST /CNT=4 /TID=Rn.41060.2 /TIER=ConsEnd /STK=2 /UG=Rn.41060 /UG_TITLE=ESTs BF554367 TOX high mobility group box family member 3 Tox3 291908 NM_001106171 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1379752_at AI412631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412631 /DB_XREF=gi:4256135 /DB_XREF=EST240930 /CLONE=RBRDK96 /FEA=EST /CNT=4 /TID=Rn.43652.1 /TIER=ConsEnd /STK=2 /UG=Rn.43652 /UG_TITLE=ESTs, Moderately similar to GDS1_HUMAN RAP1 GTPASE-GDP DISSOCIATION STIMULATOR 1 (H.sapiens) AI412631 RAP1, GTP-GDP dissociation stimulator 1 Rap1gds1 310909 NM_001107728 0014829 // vascular smooth muscle contraction // inferred from mutant phenotype /// 0031034 // myosin filament assembly // inferred from mutant phenotype /// 0032321 // positive regulation of Rho GTPase activity // inferred from mutant phenotype 0005488 // binding // inferred from electronic annotation 1379753_at BE121134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121134 /DB_XREF=gi:8513239 /DB_XREF=UI-R-CA0-bau-d-11-0-UI.s1 /CLONE=UI-R-CA0-bau-d-11-0-UI /FEA=EST /CNT=4 /TID=Rn.53750.1 /TIER=ConsEnd /STK=2 /UG=Rn.53750 /UG_TITLE=ESTs, Weakly similar to PEX5 MOUSE PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR (M.musculus) BE121134 peroxisomal biogenesis factor 5-like Pex5l 286937 NM_173152 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded /// 0043949 // regulation of cAMP-mediated signaling // inferred from direct assay /// 0043949 // regulation of cAMP-mediated signaling // inferred from sequence or structural similarity /// 0045055 // regulated secretory pathway // inferred from direct assay /// 0045185 // maintenance of protein location // inferred from electronic annotation /// 0045185 // maintenance of protein location // not recorded /// 0051461 // positive regulation of adrenocorticotropin secretion // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0017071 // intracellular cyclic nucleotide activated cation channel complex // inferred from direct assay /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0051286 // cell tip // inferred from direct assay 0005221 // intracellular cyclic nucleotide activated cation channel activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017137 // Rab GTPase binding // inferred from physical interaction 1379754_at AI070598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070598 /DB_XREF=gi:3396849 /DB_XREF=UI-R-C2-mr-g-04-0-UI.s1 /CLONE=UI-R-C2-mr-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.20119.1 /TIER=ConsEnd /STK=2 /UG=Rn.20119 /UG_TITLE=ESTs AI070598 staufen, RNA binding protein, homolog 2 (Drosophila) Stau2 171500 NM_001007149 /// NM_001007150 /// NM_134466 0006810 // transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation 1379755_at BE116194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116194 /DB_XREF=gi:8508299 /DB_XREF=UI-R-BS1-aya-e-05-0-UI.s1 /CLONE=UI-R-BS1-aya-e-05-0-UI /FEA=EST /CNT=4 /TID=Rn.21707.1 /TIER=ConsEnd /STK=2 /UG=Rn.21707 /UG_TITLE=ESTs BE116194 1379756_at BF283938 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283938 /DB_XREF=gi:11215008 /DB_XREF=EST448529 /CLONE=RGIEJ19 /FEA=EST /CNT=4 /TID=Rn.28386.1 /TIER=ConsEnd /STK=2 /UG=Rn.28386 /UG_TITLE=ESTs BF283938 RGD1562890 RGD1562890 294945 NM_001106424 1379757_at AW533071 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533071 /DB_XREF=gi:7175485 /DB_XREF=UI-R-BU0-amz-e-04-0-UI.s1 /CLONE=UI-R-BU0-amz-e-04-0-UI /FEA=EST /CNT=4 /TID=Rn.44852.1 /TIER=ConsEnd /STK=2 /UG=Rn.44852 /UG_TITLE=ESTs AW533071 1379758_at AI229471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229471 /DB_XREF=gi:3813358 /DB_XREF=EST226166 /CLONE=REMCG82 /FEA=EST /CNT=4 /TID=Rn.24448.1 /TIER=ConsEnd /STK=2 /UG=Rn.24448 /UG_TITLE=ESTs AI229471 1379759_at BG377329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377329 /DB_XREF=gi:13301801 /DB_XREF=UI-R-CU0-bvc-b-10-0-UI.s1 /CLONE=UI-R-CU0-bvc-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.24864.2 /TIER=ConsEnd /STK=2 /UG=Rn.24864 /UG_TITLE=ESTs, Weakly similar to YNH2_CAEEL HYPOTHETICAL 31.0 KD PROTEIN R107.2 IN CHROMOSOME III (C.elegans) BG377329 carbohydrate kinase domain containing Carkd 361185 NM_001108402 0005739 // mitochondrion // not recorded 1379760_at AI454285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454285 /DB_XREF=gi:4292656 /DB_XREF=UI-R-E1-gl-h-07-0-UI.s1 /CLONE=UI-R-E1-gl-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.35002.1 /TIER=ConsEnd /STK=2 /UG=Rn.35002 /UG_TITLE=ESTs AI454285 tumor necrosis factor, alpha-induced protein 8-like 2 Tnfaip8l2 310663 NM_001014039 0045087 // innate immune response // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379761_at BE104517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104517 /DB_XREF=gi:8496617 /DB_XREF=UI-R-BX0-arq-c-10-0-UI.s1 /CLONE=UI-R-BX0-arq-c-10-0-UI /FEA=EST /CNT=4 /TID=Rn.48990.1 /TIER=ConsEnd /STK=2 /UG=Rn.48990 /UG_TITLE=ESTs BE104517 1379762_at AA849027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849027 /DB_XREF=gi:4131696 /DB_XREF=EST191789 /CLONE=RLUAJ63 /FEA=EST /CNT=4 /TID=Rn.6415.1 /TIER=ConsEnd /STK=2 /UG=Rn.6415 /UG_TITLE=ESTs AA849027 1379763_at BE111542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111542 /DB_XREF=gi:8503647 /DB_XREF=UI-R-BJ1-avc-a-06-0-UI.s1 /CLONE=UI-R-BJ1-avc-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.52006.1 /TIER=ConsEnd /STK=2 /UG=Rn.52006 /UG_TITLE=ESTs BE111542 Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) Smg7 360855 NM_001191549 /// XM_001071081 /// XM_002724873 /// XM_002728013 /// XM_341132 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051721 // protein phosphatase 2A binding // not recorded 1379764_at AI555029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555029 /DB_XREF=gi:4487392 /DB_XREF=UI-R-C2p-qv-d-01-0-UI.s1 /CLONE=UI-R-C2p-qv-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.39013.1 /TIER=ConsEnd /STK=2 /UG=Rn.39013 /UG_TITLE=ESTs AI555029 1379765_at AI111738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111738 /DB_XREF=gi:3511687 /DB_XREF=UI-R-Y0-me-b-11-0-UI.s1 /CLONE=UI-R-Y0-me-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.26621.1 /TIER=ConsEnd /STK=2 /UG=Rn.26621 /UG_TITLE=ESTs AI111738 nemo like kinase Nlk 497961 NM_001191924 /// XM_001080888 /// XM_573152 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007243 // intracellular protein kinase cascade // not recorded /// 0018107 // peptidyl-threonine phosphorylation // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0033136 // serine phosphorylation of STAT3 protein // not recorded /// 0045449 // regulation of transcription // not recorded /// 0046777 // protein autophosphorylation // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004707 // MAP kinase activity // inferred from electronic annotation /// 0004707 // MAP kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0042169 // SH2 domain binding // not recorded 1379766_at AI500952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI500952 /DB_XREF=gi:4398803 /DB_XREF=UI-R-C2p-rv-b-04-0-UI.s1 /CLONE=UI-R-C2p-rv-b-04-0-UI /FEA=EST /CNT=4 /TID=Rn.35223.1 /TIER=ConsEnd /STK=2 /UG=Rn.35223 /UG_TITLE=ESTs AI500952 Src-like adaptor Sla 338477 NM_178097 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379767_at AI406389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406389 /DB_XREF=gi:4249893 /DB_XREF=EST234675 /CLONE=RBRDP61 /FEA=EST /CNT=4 /TID=Rn.19761.1 /TIER=ConsEnd /STK=2 /UG=Rn.19761 /UG_TITLE=ESTs AI406389 1379768_at AA998903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998903 /DB_XREF=gi:4281080 /DB_XREF=UI-R-C0-hp-c-08-0-UI.s1 /CLONE=UI-R-C0-hp-c-08-0-UI /FEA=EST /CNT=4 /TID=Rn.21501.1 /TIER=ConsEnd /STK=2 /UG=Rn.21501 /UG_TITLE=ESTs AA998903 1379769_at AW529745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529745 /DB_XREF=gi:7172159 /DB_XREF=UI-R-BU0-amr-g-12-0-UI.s1 /CLONE=UI-R-BU0-amr-g-12-0-UI /FEA=EST /CNT=4 /TID=Rn.47296.1 /TIER=ConsEnd /STK=2 /UG=Rn.47296 /UG_TITLE=ESTs AW529745 1379770_at BF282951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282951 /DB_XREF=gi:11214021 /DB_XREF=EST447542 /CLONE=RGIDV44 /FEA=EST /CNT=4 /TID=Rn.6484.1 /TIER=ConsEnd /STK=2 /UG=Rn.6484 /UG_TITLE=ESTs, Weakly similar to T27032 hypothetical protein Y49A3A.1 - Caenorhabditis elegans (C.elegans) BF282951 choline phosphotransferase 1 Chpt1 362866 NM_001007750 0006656 // phosphatidylcholine biosynthetic process // inferred from electronic annotation /// 0006656 // phosphatidylcholine biosynthetic process // not recorded /// 0006663 // platelet activating factor biosynthetic process // inferred from electronic annotation /// 0006663 // platelet activating factor biosynthetic process // not recorded /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004142 // diacylglycerol cholinephosphotransferase activity // inferred from electronic annotation /// 0004142 // diacylglycerol cholinephosphotransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016780 // phosphotransferase activity, for other substituted phosphate groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379771_at AI228922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228922 /DB_XREF=gi:3812809 /DB_XREF=EST225617 /CLONE=RBRDB73 /FEA=EST /CNT=4 /TID=Rn.24377.1 /TIER=ConsEnd /STK=2 /UG=Rn.24377 /UG_TITLE=ESTs AI228922 1379772_at BG371624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371624 /DB_XREF=gi:13268161 /DB_XREF=UI-R-CW0-bvx-g-02-0-UI.s1 /CLONE=UI-R-CW0-bvx-g-02-0-UI /FEA=EST /CNT=4 /TID=Rn.7965.1 /TIER=ConsEnd /STK=2 /UG=Rn.7965 /UG_TITLE=ESTs BG371624 apelin receptor Aplnr 83518 NM_031349 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // traceable author statement /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0050878 // regulation of body fluid levels // inferred from mutant phenotype 0005634 // nucleus // inferred from mutant phenotype /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from mutant phenotype 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0042277 // peptide binding // traceable author statement 1379773_at AA859667 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859667 /DB_XREF=gi:4230212 /DB_XREF=UI-R-E0-bs-c-11-0-UI.s1 /CLONE=UI-R-E0-bs-c-11-0-UI /FEA=EST /CNT=4 /TID=Rn.22624.1 /TIER=ConsEnd /STK=2 /UG=Rn.22624 /UG_TITLE=ESTs AA859667 1379774_at AI137801 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137801 /DB_XREF=gi:3638578 /DB_XREF=UI-R-C0-hx-d-08-0-UI.s1 /CLONE=UI-R-C0-hx-d-08-0-UI /FEA=EST /CNT=4 /TID=Rn.27512.1 /TIER=ConsEnd /STK=2 /UG=Rn.27512 /UG_TITLE=ESTs AI137801 1379775_at AI556888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556888 /DB_XREF=gi:4489251 /DB_XREF=UI-R-C2p-rp-b-07-0-UI.s1 /CLONE=UI-R-C2p-rp-b-07-0-UI /FEA=EST /CNT=4 /TID=Rn.63859.1 /TIER=ConsEnd /STK=2 /UG=Rn.63859 /UG_TITLE=ESTs, Moderately similar to I39065 transcription initiation factor IIIB 90K chain (H.sapiens) AI556888 BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae) Brf1 299347 NM_001106761 0006352 // transcription initiation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation /// 0043488 // regulation of mRNA stability // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1379776_at BI395539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI395539 /DB_XREF=gi:15090857 /DB_XREF=EST531410 /CLONE=RGIBQ19 /FEA=EST /CNT=4 /TID=Rn.8827.1 /TIER=ConsEnd /STK=2 /UG=Rn.8827 /UG_TITLE=ESTs BI395539 1379777_at AI070855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070855 /DB_XREF=gi:3397106 /DB_XREF=UI-R-C2-mv-h-04-0-UI.s1 /CLONE=UI-R-C2-mv-h-04-0-UI /FEA=EST /CNT=4 /TID=Rn.19970.1 /TIER=ConsEnd /STK=2 /UG=Rn.19970 /UG_TITLE=ESTs, Highly similar to T14103 probable DNA-directed RNA polymerase (EC 2.7.7.6) I large chain - rat (R.norvegicus) AI070855 mage-d3-like /// trophinin-like LOC100361569 /// LOC100365908 100361569 /// 100365908 XM_002726401 /// XM_002729387 1379778_at AI713278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI713278 /DB_XREF=gi:5017078 /DB_XREF=UI-R-AB1-ys-a-10-0-UI.s2 /CLONE=UI-R-AB1-ys-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.40728.1 /TIER=ConsEnd /STK=2 /UG=Rn.40728 /UG_TITLE=ESTs AI713278 similar to HSPC043 protein RGD1307983 298032 XM_001061972 /// XM_216387 0006281 // DNA repair // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0010212 // response to ionizing radiation // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0070876 // SOSS complex // not recorded 0005515 // protein binding // not recorded 1379779_at BF283405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283405 /DB_XREF=gi:11214475 /DB_XREF=EST447996 /CLONE=RGIEB55 /FEA=EST /CNT=4 /TID=Rn.18479.1 /TIER=ConsEnd /STK=2 /UG=Rn.18479 /UG_TITLE=ESTs BF283405 1379780_at BE103199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103199 /DB_XREF=gi:8495263 /DB_XREF=UI-R-BT1-aqx-c-09-0-UI.s1 /CLONE=UI-R-BT1-aqx-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.42989.1 /TIER=ConsEnd /STK=2 /UG=Rn.42989 /UG_TITLE=ESTs BE103199 family with sequence similarity 65, member B Fam65b 306934 NM_001014009 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0008199 // ferric iron binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046914 // transition metal ion binding // inferred from electronic annotation 1379781_at BE120508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120508 /DB_XREF=gi:8512613 /DB_XREF=UI-R-CA0-bat-c-08-0-UI.s1 /CLONE=UI-R-CA0-bat-c-08-0-UI /FEA=EST /CNT=4 /TID=Rn.31666.1 /TIER=ConsEnd /STK=2 /UG=Rn.31666 /UG_TITLE=ESTs BE120508 1379782_a_at AI113136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113136 /DB_XREF=gi:3513085 /DB_XREF=UI-R-C2p-nr-h-01-0-UI.s1 /CLONE=UI-R-C2p-nr-h-01-0-UI /FEA=EST /CNT=1 /TID=Rn.42824.2 /TIER=ConsEnd /STK=1 /UG=Rn.42824 /UG_TITLE=ESTs AI113136 hypothetical protein LOC686432 LOC686432 686432 XM_001074078 1379783_at AI113136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113136 /DB_XREF=gi:3513085 /DB_XREF=UI-R-C2p-nr-h-01-0-UI.s1 /CLONE=UI-R-C2p-nr-h-01-0-UI /FEA=EST /CNT=1 /TID=Rn.42824.2 /TIER=ConsEnd /STK=1 /UG=Rn.42824 /UG_TITLE=ESTs AI113136 hypothetical protein LOC686432 LOC686432 686432 XM_001074078 1379784_at AA997675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997675 /DB_XREF=gi:4280957 /DB_XREF=UI-R-C0-hm-d-04-0-UI.s1 /CLONE=UI-R-C0-hm-d-04-0-UI /FEA=EST /CNT=4 /TID=Rn.12543.1 /TIER=ConsEnd /STK=2 /UG=Rn.12543 /UG_TITLE=ESTs, Moderately similar to PEX7 MOUSE PEROXISOMAL TARGETING SIGNAL 2 RECEPTOR (M.musculus) AA997675 peroxisomal biogenesis factor 7 Pex7 308718 NM_001034147 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0001958 // endochondral ossification // inferred from electronic annotation /// 0001958 // endochondral ossification // not recorded /// 0006625 // protein targeting to peroxisome // not recorded /// 0006625 // protein targeting to peroxisome // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // not recorded /// 0008611 // ether lipid biosynthetic process // inferred from electronic annotation /// 0008611 // ether lipid biosynthetic process // not recorded /// 0016558 // protein import into peroxisome matrix // inferred from electronic annotation /// 0016558 // protein import into peroxisome matrix // not recorded 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005053 // peroxisome matrix targeting signal-2 binding // inferred from electronic annotation /// 0005053 // peroxisome matrix targeting signal-2 binding // not recorded 1379785_at BI275894 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275894 /DB_XREF=gi:14920275 /DB_XREF=UI-R-CX0-bxh-g-08-0-UI.s1 /CLONE=UI-R-CX0-bxh-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.52251.1 /TIER=ConsEnd /STK=2 /UG=Rn.52251 /UG_TITLE=ESTs BI275894 1379786_at AI029721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029721 /DB_XREF=gi:4300511 /DB_XREF=UI-R-C0-jg-a-03-0-UI.s1 /CLONE=UI-R-C0-jg-a-03-0-UI /FEA=EST /CNT=4 /TID=Rn.16286.1 /TIER=ConsEnd /STK=2 /UG=Rn.16286 /UG_TITLE=ESTs AI029721 1379787_at BI290392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290392 /DB_XREF=gi:14948917 /DB_XREF=UI-R-DK0-cfv-g-02-0-UI.s1 /CLONE=UI-R-DK0-cfv-g-02-0-UI /FEA=EST /CNT=4 /TID=Rn.41056.1 /TIER=ConsEnd /STK=2 /UG=Rn.41056 /UG_TITLE=ESTs, Highly similar to URK1 MOUSE URIDINE KINASE (M.musculus) BI290392 Uridine-cytidine kinase 1 Uck1 311864 NM_001107831 0008152 // metabolic process // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004849 // uridine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1379788_at AI231019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231019 /DB_XREF=gi:3814899 /DB_XREF=EST227707 /CLONE=REMDE28 /FEA=EST /CNT=4 /TID=Rn.43497.1 /TIER=ConsEnd /STK=2 /UG=Rn.43497 /UG_TITLE=ESTs AI231019 1379789_at BF410639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410639 /DB_XREF=gi:11398572 /DB_XREF=UI-R-CA0-bma-f-03-0-UI.s1 /CLONE=UI-R-CA0-bma-f-03-0-UI /FEA=EST /CNT=4 /TID=Rn.17519.1 /TIER=ConsEnd /STK=2 /UG=Rn.17519 /UG_TITLE=ESTs BF410639 1379790_at BI288729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288729 /DB_XREF=gi:14945595 /DB_XREF=UI-R-DK0-cde-c-07-0-UI.s1 /CLONE=UI-R-DK0-cde-c-07-0-UI /FEA=EST /CNT=4 /TID=Rn.48985.1 /TIER=ConsEnd /STK=2 /UG=Rn.48985 /UG_TITLE=ESTs BI288729 delta-like 4 (Drosophila) Dll4 311332 NM_001107760 0001525 // angiogenesis // not recorded /// 0007154 // cell communication // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0043537 // negative regulation of blood vessel endothelial cell migration // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005112 // Notch binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379791_at AW915948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915948 /DB_XREF=gi:8081661 /DB_XREF=EST347252 /CLONE=RGIDE11 /FEA=EST /CNT=4 /TID=Rn.44065.1 /TIER=ConsEnd /STK=2 /UG=Rn.44065 /UG_TITLE=ESTs, Highly similar to CD3E MOUSE T-CELL SURFACE GLYCOPROTEIN CD3 EPSILON CHAIN PRECURSOR (M.musculus) AW915948 CD3 molecule, epsilon polypeptide Cd3e 315609 NM_001108140 0002669 // positive regulation of T cell anergy // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007584 // response to nutrient // inferred from direct assay /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0032753 // positive regulation of interleukin-4 production // not recorded /// 0033077 // T cell differentiation in thymus // inferred from expression pattern /// 0042102 // positive regulation of T cell proliferation // inferred from direct assay /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0045060 // negative thymic T cell selection // not recorded /// 0045086 // positive regulation of interleukin-2 biosynthetic process // not recorded /// 0045879 // negative regulation of smoothened signaling pathway // not recorded /// 0046641 // positive regulation of alpha-beta T cell proliferation // not recorded /// 0046649 // lymphocyte activation // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050850 // positive regulation of calcium-mediated signaling // not recorded /// 0050852 // T cell receptor signaling pathway // not recorded /// 0050870 // positive regulation of T cell activation // not recorded 0001772 // immunological synapse // not recorded /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0042101 // T cell receptor complex // not recorded /// 0042105 // alpha-beta T cell receptor complex // not recorded 0004871 // signal transducer activity // not recorded /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017124 // SH3 domain binding // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1379792_at BF408715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408715 /DB_XREF=gi:11396690 /DB_XREF=UI-R-BT1-bnf-b-10-0-UI.s1 /CLONE=UI-R-BT1-bnf-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.46595.1 /TIER=ConsEnd /STK=2 /UG=Rn.46595 /UG_TITLE=ESTs BF408715 1379793_at AW535749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535749 /DB_XREF=gi:7178163 /DB_XREF=UI-R-BS0-aod-f-04-0-UI.s1 /CLONE=UI-R-BS0-aod-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.41940.1 /TIER=ConsEnd /STK=2 /UG=Rn.41940 /UG_TITLE=ESTs, Weakly similar to T28919 hypothetical protein C13F10.7 - Caenorhabditis elegans (C.elegans) AW535749 SFRS12-interacting protein 1 Sfrs12ip1 361888 NM_001008373 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379794_at AI029386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029386 /DB_XREF=gi:4298212 /DB_XREF=UI-R-C0-iw-a-09-0-UI.s1 /CLONE=UI-R-C0-iw-a-09-0-UI /FEA=EST /CNT=4 /TID=Rn.32521.1 /TIER=ConsEnd /STK=2 /UG=Rn.32521 /UG_TITLE=ESTs AI029386 granzyme B Gzmb 171528 NM_138517 0006508 // proteolysis // inferred from electronic annotation /// 0010942 // positive regulation of cell death // inferred from mutant phenotype /// 0019835 // cytolysis // inferred from electronic annotation /// 0060555 // induction of necroptosis by extracellular signals // inferred from mutant phenotype 0005769 // early endosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1379795_at AA819224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819224 /DB_XREF=gi:4227885 /DB_XREF=UI-R-A0-al-g-12-0-UI.s2 /CLONE=UI-R-A0-al-g-12-0-UI /FEA=EST /CNT=4 /TID=Rn.24171.1 /TIER=ConsEnd /STK=2 /UG=Rn.24171 /UG_TITLE=ESTs, Weakly similar to C56C10.7.p (Caenorhabditis elegans) (C.elegans) AA819224 similar to RIKEN cDNA 2410002O22 gene RGD1306583 294709 NM_001013908 1379796_at AI717605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717605 /DB_XREF=gi:5034861 /DB_XREF=UI-R-Y0-ack-c-04-0-UI.s1 /CLONE=UI-R-Y0-ack-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.38717.1 /TIER=ConsEnd /STK=2 /UG=Rn.38717 /UG_TITLE=ESTs AI717605 catechol-O-methyltransferase domain containing 1 Comtd1 305685 NM_001107249 0005739 // mitochondrion // not recorded 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008171 // O-methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1379797_at AI229704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229704 /DB_XREF=gi:3813591 /DB_XREF=EST226399 /CLONE=REMCK80 /FEA=EST /CNT=4 /TID=Rn.24466.1 /TIER=ConsEnd /STK=2 /UG=Rn.24466 /UG_TITLE=ESTs AI229704 1379798_at AW144116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144116 /DB_XREF=gi:6164015 /DB_XREF=EST294412 /CLONE=RGICI44 /FEA=EST /CNT=4 /TID=Rn.27404.1 /TIER=ConsEnd /STK=2 /UG=Rn.27404 /UG_TITLE=ESTs AW144116 1379799_at BF415056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415056 /DB_XREF=gi:11403045 /DB_XREF=UI-R-BJ2-bou-b-06-0-UI.s1 /CLONE=UI-R-BJ2-bou-b-06-0-UI /FEA=EST /CNT=4 /TID=Rn.47821.1 /TIER=ConsEnd /STK=2 /UG=Rn.47821 /UG_TITLE=ESTs BF415056 1379800_at BF414083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414083 /DB_XREF=gi:11402072 /DB_XREF=UI-R-BJ2-bom-b-11-0-UI.s1 /CLONE=UI-R-BJ2-bom-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.55564.1 /TIER=ConsEnd /STK=2 /UG=Rn.55564 /UG_TITLE=ESTs BF414083 Zinc finger protein 532 Znf532 307362 NM_001107382 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1379801_at AI137954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137954 /DB_XREF=gi:3638731 /DB_XREF=UI-R-C0-hl-a-06-0-UI.s1 /CLONE=UI-R-C0-hl-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.23792.1 /TIER=ConsEnd /STK=2 /UG=Rn.23792 /UG_TITLE=ESTs AI137954 1379802_at BF287746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287746 /DB_XREF=gi:11218816 /DB_XREF=EST452337 /CLONE=RGIGJ47 /FEA=EST /CNT=4 /TID=Rn.17775.1 /TIER=ConsEnd /STK=2 /UG=Rn.17775 /UG_TITLE=ESTs BF287746 ArfGAP with FG repeats 2 Agfg2 304375 NM_001107131 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1379803_at AI406386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406386 /DB_XREF=gi:4249890 /DB_XREF=EST234672 /CLONE=RBRDP53 /FEA=EST /CNT=4 /TID=Rn.24828.1 /TIER=ConsEnd /STK=2 /UG=Rn.24828 /UG_TITLE=ESTs, Weakly similar to A47179 homeotic protein LH-2 - rat (R.norvegicus) AI406386 LIM domain only 4 Lmo4 362051 NM_001009708 0001843 // neural tube closure // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379804_at AA900057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900057 /DB_XREF=gi:4232546 /DB_XREF=UI-R-E0-da-e-11-0-UI.s1 /CLONE=UI-R-E0-da-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.22295.1 /TIER=ConsEnd /STK=2 /UG=Rn.22295 /UG_TITLE=ESTs AA900057 sorting nexin family member 27 Snx27 260323 NM_001110151 /// NM_152847 0006810 // transport // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007399 // nervous system development // non-traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1379805_at BF410740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410740 /DB_XREF=gi:11398715 /DB_XREF=UI-R-CA0-bmc-d-05-0-UI.s1 /CLONE=UI-R-CA0-bmc-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.61775.1 /TIER=ConsEnd /STK=2 /UG=Rn.61775 /UG_TITLE=ESTs, Weakly similar to T32564 hypothetical protein ZK185.2 - Caenorhabditis elegans (C.elegans) BF410740 solute carrier family 41, member 2 Slc41a2 362861 NM_001108742 1379806_at BF550636 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550636 /DB_XREF=gi:11660366 /DB_XREF=UI-R-C0-hr-e-03-0-UI.r1 /CLONE=UI-R-C0-hr-e-03-0-UI /FEA=EST /CNT=4 /TID=Rn.12685.1 /TIER=ConsEnd /STK=2 /UG=Rn.12685 /UG_TITLE=ESTs BF550636 1379807_at BE109195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109195 /DB_XREF=gi:8501300 /DB_XREF=UI-R-BS1-azd-a-06-0-UI.s1 /CLONE=UI-R-BS1-azd-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.13313.1 /TIER=ConsEnd /STK=2 /UG=Rn.13313 /UG_TITLE=ESTs BE109195 1379808_at AI555054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555054 /DB_XREF=gi:4487417 /DB_XREF=UI-R-C2p-qv-h-05-0-UI.s1 /CLONE=UI-R-C2p-qv-h-05-0-UI /FEA=EST /CNT=4 /TID=Rn.39201.1 /TIER=ConsEnd /STK=2 /UG=Rn.39201 /UG_TITLE=ESTs AI555054 1379809_at AI535522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535522 /DB_XREF=gi:4449657 /DB_XREF=UI-R-C3-sq-g-10-0-UI.s1 /CLONE=UI-R-C3-sq-g-10-0-UI /FEA=EST /CNT=4 /TID=Rn.44108.1 /TIER=ConsEnd /STK=2 /UG=Rn.44108 /UG_TITLE=ESTs, Moderately similar to T13601 hypothetical protein EG:80H7.5 - fruit fly (D.melanogaster) AI535522 pleckstrin homology domain containing, family F (with FYVE domain) member 2 Plekhf2 362484 NM_001108655 0030133 // transport vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379810_at AI454911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454911 /DB_XREF=gi:4297037 /DB_XREF=UI-R-C2p-ql-a-12-0-UI.s1 /CLONE=UI-R-C2p-ql-a-12-0-UI /FEA=EST /CNT=4 /TID=Rn.35148.1 /TIER=ConsEnd /STK=2 /UG=Rn.35148 /UG_TITLE=ESTs, Moderately similar to A55053 endothelial monocyte-activating protein II precursor - mouse (M.musculus) AI454911 aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 Aimp1 114632 NM_053757 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0006954 // inflammatory response // traceable author statement /// 0007267 // cell-cell signaling // not recorded /// 0016525 // negative regulation of angiogenesis // traceable author statement /// 0048514 // blood vessel morphogenesis // inferred from expression pattern /// 0050900 // leukocyte migration // not recorded /// 0051607 // defense response to virus // inferred from expression pattern 0005829 // cytosol // not recorded /// 0017101 // aminoacyl-tRNA synthetase multienzyme complex // not recorded 0000049 // tRNA binding // not recorded /// 0000049 // tRNA binding // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005125 // cytokine activity // traceable author statement /// 0042803 // protein homodimerization activity // not recorded /// 0043498 // cell surface binding // not recorded 1379811_at AI763912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763912 /DB_XREF=gi:5209847 /DB_XREF=UI-R-Y0-act-e-09-0-UI.s1 /CLONE=UI-R-Y0-act-e-09-0-UI /FEA=EST /CNT=4 /TID=Rn.63905.1 /TIER=ConsEnd /STK=2 /UG=Rn.63905 /UG_TITLE=ESTs AI763912 1379812_at AI171727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171727 /DB_XREF=gi:3711767 /DB_XREF=EST217709 /CLONE=RMUBO88 /FEA=EST /CNT=4 /TID=Rn.15755.1 /TIER=ConsEnd /STK=2 /UG=Rn.15755 /UG_TITLE=ESTs, Weakly similar to 1617160A phenylethanolamine N-methyltransferase (R.norvegicus) AI171727 nicotinamide N-methyltransferase Nnmt 300691 NM_001106819 0010243 // response to organic nitrogen // inferred from expression pattern /// 0031100 // organ regeneration // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1379813_at BE111288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111288 /DB_XREF=gi:8503393 /DB_XREF=UI-R-BJ1-ava-a-09-0-UI.s1 /CLONE=UI-R-BJ1-ava-a-09-0-UI /FEA=EST /CNT=4 /TID=Rn.51741.1 /TIER=ConsEnd /STK=2 /UG=Rn.51741 /UG_TITLE=ESTs BE111288 RGD1565689 RGD1565689 498958 XM_002725398 /// XM_579893 1379814_at AW532796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532796 /DB_XREF=gi:7175210 /DB_XREF=UI-R-BU0-ams-c-11-0-UI.s1 /CLONE=UI-R-BU0-ams-c-11-0-UI /FEA=EST /CNT=4 /TID=Rn.14694.1 /TIER=ConsEnd /STK=2 /UG=Rn.14694 /UG_TITLE=ESTs AW532796 1379815_at AI713959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI713959 /DB_XREF=gi:5017759 /DB_XREF=UI-R-AB1-yt-g-05-0-UI.s1 /CLONE=UI-R-AB1-yt-g-05-0-UI /FEA=EST /CNT=4 /TID=Rn.39393.1 /TIER=ConsEnd /STK=2 /UG=Rn.39393 /UG_TITLE=ESTs, Moderately similar to LEF1 RAT LYMPHOID ENHANCER BINDING FACTOR 1 (R.norvegicus) AI713959 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1379816_at AI502578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502578 /DB_XREF=gi:4400429 /DB_XREF=UI-R-C2-ni-g-12-0-UI.s1 /CLONE=UI-R-C2-ni-g-12-0-UI /FEA=EST /CNT=4 /TID=Rn.15430.1 /TIER=ConsEnd /STK=2 /UG=Rn.15430 /UG_TITLE=ESTs AI502578 fibrosin-like 1 Fbrsl1 304572 XM_001080689 /// XM_222254 1379817_at AI227924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227924 /DB_XREF=gi:3811811 /DB_XREF=EST224619 /CLONE=RBRCN66 /FEA=EST /CNT=4 /TID=Rn.24277.1 /TIER=ConsEnd /STK=2 /UG=Rn.24277 /UG_TITLE=ESTs AI227924 Purine-rich element binding protein G Purg 361162 NM_001191554 /// XM_001068166 /// XM_002725199 /// XM_002728412 /// XM_341448 1379818_at BF288109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288109 /DB_XREF=gi:11219179 /DB_XREF=EST452700 /CLONE=RGIGP63 /FEA=EST /CNT=4 /TID=Rn.42802.1 /TIER=ConsEnd /STK=2 /UG=Rn.42802 /UG_TITLE=ESTs BF288109 1379819_at BF392928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392928 /DB_XREF=gi:11377787 /DB_XREF=UI-R-CA0-bfq-h-02-0-UI.s1 /CLONE=UI-R-CA0-bfq-h-02-0-UI /FEA=EST /CNT=4 /TID=Rn.52373.1 /TIER=ConsEnd /STK=2 /UG=Rn.52373 /UG_TITLE=ESTs BF392928 1379820_at BF416300 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416300 /DB_XREF=gi:11404289 /DB_XREF=UI-R-CA0-bkr-g-12-0-UI.s1 /CLONE=UI-R-CA0-bkr-g-12-0-UI /FEA=EST /CNT=4 /TID=Rn.62980.1 /TIER=ConsEnd /STK=2 /UG=Rn.62980 /UG_TITLE=ESTs BF416300 1379821_at AW527863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527863 /DB_XREF=gi:7170277 /DB_XREF=UI-R-BT1-akb-a-08-0-UI.s1 /CLONE=UI-R-BT1-akb-a-08-0-UI /FEA=EST /CNT=4 /TID=Rn.46684.1 /TIER=ConsEnd /STK=2 /UG=Rn.46684 /UG_TITLE=ESTs AW527863 similar to Probable G-protein coupled receptor 62 (hGPCR8) RGD1560166 501049 XM_001073569 /// XM_576464 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 1379822_at BI294801 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294801 /DB_XREF=gi:14957609 /DB_XREF=UI-R-DK0-cec-c-11-0-UI.s1 /CLONE=UI-R-DK0-cec-c-11-0-UI /FEA=EST /CNT=4 /TID=Rn.54921.1 /TIER=ConsEnd /STK=2 /UG=Rn.54921 /UG_TITLE=ESTs, Weakly similar to E29149 proline-rich protein - mouse (M.musculus) BI294801 splicing factor, arginine/serine-rich 18 Sfrs18 297942 NM_001025274 1379823_at BF562158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562158 /DB_XREF=gi:11671888 /DB_XREF=UI-R-E1-ft-c-06-0-UI.r1 /CLONE=UI-R-E1-ft-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.32879.1 /TIER=ConsEnd /STK=2 /UG=Rn.32879 /UG_TITLE=ESTs BF562158 1379824_at AI101139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101139 /DB_XREF=gi:4133983 /DB_XREF=EST210428 /CLONE=RBRBG07 /FEA=EST /CNT=4 /TID=Rn.22407.1 /TIER=ConsEnd /STK=2 /UG=Rn.22407 /UG_TITLE=ESTs AI101139 thymocyte selection-associated high mobility group box Tox 362481 NM_001108654 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1379825_at AI112993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112993 /DB_XREF=gi:3512942 /DB_XREF=UI-R-E1-gp-e-09-0-UI.s1 /CLONE=UI-R-E1-gp-e-09-0-UI /FEA=EST /CNT=4 /TID=Rn.40322.1 /TIER=ConsEnd /STK=2 /UG=Rn.40322 /UG_TITLE=ESTs, Weakly similar to LIS1 MOUSE PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB ALPHA SUBUNIT (R.norvegicus) AI112993 1379826_at AA859429 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859429 /DB_XREF=gi:4229775 /DB_XREF=UI-R-E0-bo-f-06-0-UI.s1 /CLONE=UI-R-E0-bo-f-06-0-UI /FEA=EST /CNT=4 /TID=Rn.41038.1 /TIER=ConsEnd /STK=2 /UG=Rn.41038 /UG_TITLE=ESTs AA859429 1379827_at BG376569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376569 /DB_XREF=gi:13301041 /DB_XREF=UI-R-CU0-buu-a-11-0-UI.s1 /CLONE=UI-R-CU0-buu-a-11-0-UI /FEA=EST /CNT=4 /TID=Rn.36576.1 /TIER=ConsEnd /STK=2 /UG=Rn.36576 /UG_TITLE=ESTs, Highly similar to T34562 G protein pathway supressor 2 (H.sapiens) BG376569 G protein pathway suppressor 2 Gps2 497941 NM_001017477 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0046329 // negative regulation of JNK cascade // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0017053 // transcriptional repressor complex // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // not recorded 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379828_at AI113302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113302 /DB_XREF=gi:3513251 /DB_XREF=UI-R-C2p-nr-b-10-0-UI.s1 /CLONE=UI-R-C2p-nr-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.24192.1 /TIER=ConsEnd /STK=2 /UG=Rn.24192 /UG_TITLE=ESTs AI113302 1379829_at BF418799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418799 /DB_XREF=gi:11406788 /DB_XREF=UI-R-BJ2-bqj-b-04-0-UI.s1 /CLONE=UI-R-BJ2-bqj-b-04-0-UI /FEA=EST /CNT=4 /TID=Rn.38368.1 /TIER=ConsEnd /STK=2 /UG=Rn.38368 /UG_TITLE=ESTs BF418799 c-myc binding protein LOC100361133 100361133 XM_002729528 1379830_at BF396633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396633 /DB_XREF=gi:11381608 /DB_XREF=UI-R-BS2-bea-d-03-0-UI.s1 /CLONE=UI-R-BS2-bea-d-03-0-UI /FEA=EST /CNT=4 /TID=Rn.63869.1 /TIER=ConsEnd /STK=2 /UG=Rn.63869 /UG_TITLE=ESTs BF396633 1379831_at AW252506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252506 /DB_XREF=gi:6596097 /DB_XREF=UI-R-BJ0-ada-d-03-0-UI.s1 /CLONE=UI-R-BJ0-ada-d-03-0-UI /FEA=EST /CNT=4 /TID=Rn.41483.1 /TIER=ConsEnd /STK=2 /UG=Rn.41483 /UG_TITLE=ESTs AW252506 1379832_at BF544977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF544977 /DB_XREF=gi:11636084 /DB_XREF=UI-R-C2p-rh-f-05-0-UI.r1 /CLONE=UI-R-C2p-rh-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.38161.1 /TIER=ConsEnd /STK=2 /UG=Rn.38161 /UG_TITLE=ESTs BF544977 polymerase (RNA) II (DNA directed) polypeptide D Polr2d 364834 NM_001108886 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0008380 // RNA splicing // not recorded /// 0044237 // cellular metabolic process // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005665 // DNA-directed RNA polymerase II, core complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // not recorded /// 0004672 // protein kinase activity // not recorded 1379833_at BE110171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110171 /DB_XREF=gi:8502276 /DB_XREF=UI-R-BJ1-avf-h-07-0-UI.s1 /CLONE=UI-R-BJ1-avf-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.21421.1 /TIER=ConsEnd /STK=2 /UG=Rn.21421 /UG_TITLE=ESTs BE110171 leucine rich repeat and Ig domain containing 4 /// RAR-related orphan receptor C Lingo4 /// Rorc 368158 /// 499668 NM_001109189 /// XM_001058675 /// XM_347322 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from expression pattern /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0033077 // T cell differentiation in thymus // not recorded /// 0033077 // T cell differentiation in thymus // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0046632 // alpha-beta T cell differentiation // not recorded /// 0046632 // alpha-beta T cell differentiation // inferred from electronic annotation /// 0048535 // lymph node development // not recorded /// 0048535 // lymph node development // inferred from electronic annotation /// 0048537 // mucosal-associated lymphoid tissue development // not recorded /// 0048537 // mucosal-associated lymphoid tissue development // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379834_at BG374488 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374488 /DB_XREF=gi:13298960 /DB_XREF=UI-R-CV1-bsr-a-03-0-UI.s1 /CLONE=UI-R-CV1-bsr-a-03-0-UI /FEA=EST /CNT=4 /TID=Rn.36884.1 /TIER=ConsEnd /STK=2 /UG=Rn.36884 /UG_TITLE=ESTs BG374488 1379835_at BF558512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558512 /DB_XREF=gi:11668242 /DB_XREF=UI-R-C1-ld-d-04-0-UI.r1 /CLONE=UI-R-C1-ld-d-04-0-UI /FEA=EST /CNT=4 /TID=Rn.19107.1 /TIER=ConsEnd /STK=2 /UG=Rn.19107 /UG_TITLE=ESTs BF558512 1379836_at BF400850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400850 /DB_XREF=gi:11388790 /DB_XREF=UI-R-CA0-bhf-h-12-0-UI.s1 /CLONE=UI-R-CA0-bhf-h-12-0-UI /FEA=EST /CNT=4 /TID=Rn.55340.1 /TIER=ConsEnd /STK=2 /UG=Rn.55340 /UG_TITLE=ESTs BF400850 1379837_at AI548995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548995 /DB_XREF=gi:4466483 /DB_XREF=UI-R-C3-tv-c-03-0-UI.s1 /CLONE=UI-R-C3-tv-c-03-0-UI /FEA=EST /CNT=4 /TID=Rn.43675.1 /TIER=ConsEnd /STK=2 /UG=Rn.43675 /UG_TITLE=ESTs AI548995 1379838_at BF564647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564647 /DB_XREF=gi:11674377 /DB_XREF=UI-R-C4-aly-g-07-0-UI.r1 /CLONE=UI-R-C4-aly-g-07-0-UI /FEA=EST /CNT=4 /TID=Rn.44988.1 /TIER=ConsEnd /STK=2 /UG=Rn.44988 /UG_TITLE=ESTs BF564647 1379839_at BF549573 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549573 /DB_XREF=gi:11659303 /DB_XREF=UI-R-C1-lj-h-02-0-UI.r1 /CLONE=UI-R-C1-lj-h-02-0-UI /FEA=EST /CNT=4 /TID=Rn.19467.1 /TIER=ConsEnd /STK=2 /UG=Rn.19467 /UG_TITLE=ESTs BF549573 1379840_at AI548086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548086 /DB_XREF=gi:4465574 /DB_XREF=UI-R-C3-sm-b-07-0-UI.s1 /CLONE=UI-R-C3-sm-b-07-0-UI /FEA=EST /CNT=4 /TID=Rn.43218.1 /TIER=ConsEnd /STK=2 /UG=Rn.43218 /UG_TITLE=ESTs AI548086 1379841_a_at AI137292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137292 /DB_XREF=gi:3638069 /DB_XREF=UI-R-C2p-ol-c-02-0-UI.s1 /CLONE=UI-R-C2p-ol-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.23761.2 /TIER=ConsEnd /STK=1 /UG=Rn.23761 /UG_TITLE=ESTs AI137292 1379842_at H33639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33639 /DB_XREF=gi:979056 /DB_XREF=EST109822 /CLONE=RPNAV12 /FEA=EST /CNT=4 /TID=Rn.48839.1 /TIER=ConsEnd /STK=2 /UG=Rn.48839 /UG_TITLE=ESTs, Moderately similar to T50625 hypothetical protein DKFZp762O2113.1 (H.sapiens) H33639 suppression of tumorigenicity 7-like St7l 295344 NM_001007639 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1379843_at AA998346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998346 /DB_XREF=gi:4289216 /DB_XREF=UI-R-C0-ia-h-12-0-UI.s1 /CLONE=UI-R-C0-ia-h-12-0-UI /FEA=EST /CNT=4 /TID=Rn.24976.1 /TIER=ConsEnd /STK=2 /UG=Rn.24976 /UG_TITLE=ESTs, Weakly similar to F17C11.8.p (Caenorhabditis elegans) (C.elegans) AA998346 Vacuolar protein sorting 36 homolog (S. cerevisiae) Vps36 290851 NM_001106092 0006350 // transcription // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0016020 // membrane // inferred from electronic annotation 0008289 // lipid binding // inferred from electronic annotation /// 0043130 // ubiquitin binding // inferred from electronic annotation /// 0043130 // ubiquitin binding // not recorded 1379844_at AW531072 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531072 /DB_XREF=gi:7173486 /DB_XREF=UI-R-C4-alg-d-03-0-UI.s1 /CLONE=UI-R-C4-alg-d-03-0-UI /FEA=EST /CNT=4 /TID=Rn.23636.1 /TIER=ConsEnd /STK=2 /UG=Rn.23636 /UG_TITLE=ESTs AW531072 1379845_at AI237263 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237263 /DB_XREF=gi:3830769 /DB_XREF=EST233825 /CLONE=RPLCV80 /FEA=EST /CNT=4 /TID=Rn.11990.1 /TIER=ConsEnd /STK=2 /UG=Rn.11990 /UG_TITLE=ESTs AI237263 1379846_at AI500753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI500753 /DB_XREF=gi:4398604 /DB_XREF=UI-R-C2p-rn-e-03-0-UI.s1 /CLONE=UI-R-C2p-rn-e-03-0-UI /FEA=EST /CNT=4 /TID=Rn.34479.1 /TIER=ConsEnd /STK=2 /UG=Rn.34479 /UG_TITLE=ESTs AI500753 alkaline ceramidase 2 Acer2 313339 NM_001107943 0001953 // negative regulation of cell-matrix adhesion // not recorded /// 0006672 // ceramide metabolic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0032526 // response to retinoic acid // not recorded /// 0033629 // negative regulation of cell adhesion mediated by integrin // not recorded /// 0046512 // sphingosine biosynthetic process // not recorded /// 0090285 // negative regulation of protein glycosylation in Golgi // not recorded 0000139 // Golgi membrane // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // not recorded 0016787 // hydrolase activity // inferred from electronic annotation /// 0016811 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides // inferred from electronic annotation /// 0017040 // ceramidase activity // not recorded 1379847_at AW141858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141858 /DB_XREF=gi:6161717 /DB_XREF=EST291973 /CLONE=RGICL30 /FEA=EST /CNT=4 /TID=Rn.22869.1 /TIER=ConsEnd /STK=2 /UG=Rn.22869 /UG_TITLE=ESTs, Weakly similar to T12449 hypothetical protein DKFZp564E1616.1 (H.sapiens) AW141858 dysferlin Dysf 312492 NM_001107869 0001778 // plasma membrane repair // not recorded /// 0006906 // vesicle fusion // not recorded 0016021 // integral to membrane // inferred from electronic annotation /// 0030315 // T-tubule // not recorded /// 0042383 // sarcolemma // not recorded 0005515 // protein binding // not recorded /// 0005543 // phospholipid binding // not recorded 1379848_at BF401801 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401801 /DB_XREF=gi:11389776 /DB_XREF=UI-R-CA0-bgo-h-02-0-UI.s1 /CLONE=UI-R-CA0-bgo-h-02-0-UI /FEA=EST /CNT=4 /TID=Rn.56059.1 /TIER=ConsEnd /STK=2 /UG=Rn.56059 /UG_TITLE=ESTs, Weakly similar to DFN5_MOUSE Nonsyndromic hearing impairment protein 5 homolog (M.musculus) BF401801 deafness, autosomal recessive 59 (human) Dfnb59 679552 XM_001053449 /// XM_002726198 0007605 // sensory perception of sound // not recorded 0043025 // neuronal cell body // not recorded 1379849_at BE098416 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098416 /DB_XREF=gi:8490280 /DB_XREF=UI-R-BJ1-auc-e-09-0-UI.s1 /CLONE=UI-R-BJ1-auc-e-09-0-UI /FEA=EST /CNT=4 /TID=Rn.22328.2 /TIER=ConsEnd /STK=2 /UG=Rn.22328 /UG_TITLE=ESTs, Weakly similar to T21672 hypothetical protein F32H2.4 - Caenorhabditis elegans (C.elegans) BE098416 THO complex 3 Thoc3 290519 NM_001106059 0006406 // mRNA export from nucleus // not recorded /// 0046784 // intronless viral mRNA export from host nucleus // not recorded 0000346 // transcription export complex // not recorded 1379850_at BI296804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296804 /DB_XREF=gi:14961595 /DB_XREF=UI-R-DK0-cfz-e-08-0-UI.s1 /CLONE=UI-R-DK0-cfz-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.30330.1 /TIER=ConsEnd /STK=2 /UG=Rn.30330 /UG_TITLE=ESTs BI296804 proteasome (prosome, macropain) 26S subunit, ATPase, 6 Psmc6 289990 NM_001100509 0030163 // protein catabolic process // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation /// 0000502 // proteasome complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1379851_at AW531659 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531659 /DB_XREF=gi:7174073 /DB_XREF=UI-R-C4-aky-e-06-0-UI.s1 /CLONE=UI-R-C4-aky-e-06-0-UI /FEA=EST /CNT=4 /TID=Rn.32523.1 /TIER=ConsEnd /STK=2 /UG=Rn.32523 /UG_TITLE=ESTs AW531659 1379852_at AW527227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527227 /DB_XREF=gi:7169641 /DB_XREF=UI-R-BO1-ajm-h-10-0-UI.s1 /CLONE=UI-R-BO1-ajm-h-10-0-UI /FEA=EST /CNT=4 /TID=Rn.32280.1 /TIER=ConsEnd /STK=2 /UG=Rn.32280 /UG_TITLE=ESTs AW527227 Zinc finger protein 512B Znf512b 311721 NM_001107809 0008152 // metabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004849 // uridine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1379853_at AI058985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058985 /DB_XREF=gi:3332762 /DB_XREF=UI-R-C1-lq-b-06-0-UI.s1 /CLONE=UI-R-C1-lq-b-06-0-UI /FEA=EST /CNT=4 /TID=Rn.37665.1 /TIER=ConsEnd /STK=2 /UG=Rn.37665 /UG_TITLE=ESTs AI058985 heat shock protein family B (small), member 11 Hspb11 685284 NM_001131002 0007155 // cell adhesion // inferred from electronic annotation 0005929 // cilium // not recorded /// 0005929 // cilium // inferred from electronic annotation /// 0030992 // intraflagellar transport particle B // not recorded /// 0030992 // intraflagellar transport particle B // inferred from electronic annotation 1379854_at AA996933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996933 /DB_XREF=gi:4280697 /DB_XREF=UI-R-C0-hj-g-07-0-UI.s1 /CLONE=UI-R-C0-hj-g-07-0-UI /FEA=EST /CNT=4 /TID=Rn.12459.1 /TIER=ConsEnd /STK=2 /UG=Rn.12459 /UG_TITLE=ESTs AA996933 abhydrolase domain containing 5 Abhd5 316122 NM_212524 0006629 // lipid metabolic process // inferred from direct assay /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006654 // phosphatidic acid biosynthetic process // not recorded /// 0006654 // phosphatidic acid biosynthetic process // inferred from sequence or structural similarity /// 0006654 // phosphatidic acid biosynthetic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0010891 // negative regulation of sequestering of triglyceride // not recorded /// 0010891 // negative regulation of sequestering of triglyceride // inferred from sequence or structural similarity /// 0010891 // negative regulation of sequestering of triglyceride // inferred from electronic annotation /// 0010898 // positive regulation of triglyceride catabolic process // not recorded /// 0010898 // positive regulation of triglyceride catabolic process // inferred from sequence or structural similarity /// 0010898 // positive regulation of triglyceride catabolic process // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0051006 // positive regulation of lipoprotein lipase activity // inferred from electronic annotation /// 0051006 // positive regulation of lipoprotein lipase activity // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005811 // lipid particle // not recorded /// 0005811 // lipid particle // inferred from sequence or structural similarity /// 0005811 // lipid particle // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // inferred from electronic annotation /// 0004806 // triglyceride lipase activity // not recorded /// 0004806 // triglyceride lipase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042171 // lysophosphatidic acid acyltransferase activity // inferred from electronic annotation /// 0042171 // lysophosphatidic acid acyltransferase activity // not recorded 1379855_at BF413298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413298 /DB_XREF=gi:11401287 /DB_XREF=UI-R-BT1-bnw-c-02-0-UI.s1 /CLONE=UI-R-BT1-bnw-c-02-0-UI /FEA=EST /CNT=4 /TID=Rn.62300.1 /TIER=ConsEnd /STK=2 /UG=Rn.62300 /UG_TITLE=ESTs BF413298 1379856_at AI715975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715975 /DB_XREF=gi:5033228 /DB_XREF=UI-R-Y0-abz-e-08-0-UI.s1 /CLONE=UI-R-Y0-abz-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.22598.1 /TIER=ConsEnd /STK=2 /UG=Rn.22598 /UG_TITLE=ESTs, Weakly similar to T00022 B120 protein (H.sapiens) AI715975 AT rich interactive domain 1B (Swi1 like) Arid1b 282546 NM_172157 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0016514 // SWI/SNF complex // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379857_at AA943994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943994 /DB_XREF=gi:3103910 /DB_XREF=EST199493 /CLONE=REMAA19 /FEA=EST /CNT=5 /TID=Rn.56950.1 /TIER=ConsEnd /STK=2 /UG=Rn.56950 /UG_TITLE=ESTs AA943994 1379858_at AA955134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955134 /DB_XREF=gi:4238807 /DB_XREF=UI-R-A1-ez-b-09-0-UI.s2 /CLONE=UI-R-A1-ez-b-09-0-UI /FEA=EST /CNT=5 /TID=Rn.52577.1 /TIER=ConsEnd /STK=2 /UG=Rn.52577 /UG_TITLE=ESTs, Weakly similar to S67133 probable membrane protein YOR240w - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AA955134 methyltransferase like 2 Mettl2 363687 NM_001108839 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1379859_at AA964506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964506 /DB_XREF=gi:4279380 /DB_XREF=UI-R-C0-gv-e-11-0-UI.s1 /CLONE=UI-R-C0-gv-e-11-0-UI /FEA=EST /CNT=5 /TID=Rn.23228.1 /TIER=ConsEnd /STK=2 /UG=Rn.23228 /UG_TITLE=ESTs AA964506 1379860_at AW527212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527212 /DB_XREF=gi:7169626 /DB_XREF=UI-R-BO1-ajm-g-06-0-UI.s1 /CLONE=UI-R-BO1-ajm-g-06-0-UI /FEA=EST /CNT=5 /TID=Rn.46455.1 /TIER=ConsEnd /STK=2 /UG=Rn.46455 /UG_TITLE=ESTs AW527212 1379861_at BE107793 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107793 /DB_XREF=gi:8499898 /DB_XREF=UI-R-CA0-awx-a-01-0-UI.s1 /CLONE=UI-R-CA0-awx-a-01-0-UI /FEA=EST /CNT=5 /TID=Rn.43881.1 /TIER=ConsEnd /STK=2 /UG=Rn.43881 /UG_TITLE=ESTs, Weakly similar to YPV2_HUMAN HYPOTHETICAL PROTEIN POV-2 {SUB 9-294 (H.sapiens) BE107793 dephospho-CoA kinase domain containing Dcakd 360639 NM_001007724 0015937 // coenzyme A biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004140 // dephospho-CoA kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1379862_at BF400663 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400663 /DB_XREF=gi:11388638 /DB_XREF=UI-R-CA0-bhe-a-07-0-UI.s1 /CLONE=UI-R-CA0-bhe-a-07-0-UI /FEA=EST /CNT=5 /TID=Rn.63884.1 /TIER=ConsEnd /STK=2 /UG=Rn.63884 /UG_TITLE=ESTs, Weakly similar to S64340 hypothetical protein YGR046w - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BF400663 similar to CG33331-PA LOC362419 362419 NM_001108642 0005739 // mitochondrion // not recorded 1379863_at AW528891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528891 /DB_XREF=gi:7171305 /DB_XREF=UI-R-BT1-akj-g-08-0-UI.s1 /CLONE=UI-R-BT1-akj-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.46645.1 /TIER=ConsEnd /STK=2 /UG=Rn.46645 /UG_TITLE=ESTs AW528891 potassium voltage-gated channel, Shal-related subfamily, member 2 Kcnd2 65180 NM_031730 0001508 // regulation of action potential // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // traceable author statement /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0008076 // voltage-gated potassium channel complex // inferred from direct assay /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0005216 // ion channel activity // inferred from direct assay /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from direct assay /// 0005249 // voltage-gated potassium channel activity // inferred from mutant phenotype /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005250 // A-type (transient outward) potassium channel activity // inferred from mutant phenotype /// 0005267 // potassium channel activity // inferred from direct assay /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay 1379864_at AA943548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943548 /DB_XREF=gi:3103464 /DB_XREF=EST199047 /CLONE=RBRAL36 /FEA=EST /CNT=4 /TID=Rn.22975.1 /TIER=ConsEnd /STK=2 /UG=Rn.22975 /UG_TITLE=ESTs AA943548 1379865_at AI102075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102075 /DB_XREF=gi:3706909 /DB_XREF=EST211364 /CLONE=RBRBY60 /FEA=EST /CNT=4 /TID=Rn.43393.1 /TIER=ConsEnd /STK=2 /UG=Rn.43393 /UG_TITLE=ESTs AI102075 hypothetical protein LOC100360513 LOC100360513 100360513 XM_002725948 /// XM_002729054 1379866_at AW532098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532098 /DB_XREF=gi:7174512 /DB_XREF=UI-R-C4-ali-c-04-0-UI.s1 /CLONE=UI-R-C4-ali-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.47879.1 /TIER=ConsEnd /STK=2 /UG=Rn.47879 /UG_TITLE=ESTs AW532098 1379867_at AI102054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102054 /DB_XREF=gi:3706889 /DB_XREF=EST211343 /CLONE=RBRBY38 /FEA=EST /CNT=4 /TID=Rn.45765.1 /TIER=ConsEnd /STK=2 /UG=Rn.45765 /UG_TITLE=ESTs, Weakly similar to S26689 hypothetical protein hc1 - mouse (M.musculus) AI102054 G protein-coupled receptor 123 Gpr123 309097 NM_001107559 0005886 // plasma membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1379868_at BI287855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287855 /DB_XREF=gi:14943878 /DB_XREF=UI-R-CW0s-ccm-a-07-0-UI.s1 /CLONE=UI-R-CW0s-ccm-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.21294.1 /TIER=ConsEnd /STK=2 /UG=Rn.21294 /UG_TITLE=ESTs BI287855 pre-B-cell leukemia homeobox interacting protein 1 Pbxip1 310644 NM_001100976 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379869_at BF288329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288329 /DB_XREF=gi:11219399 /DB_XREF=EST452920 /CLONE=RGIGS49 /FEA=EST /CNT=4 /TID=Rn.30220.1 /TIER=ConsEnd /STK=2 /UG=Rn.30220 /UG_TITLE=ESTs BF288329 1379870_at BF403312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403312 /DB_XREF=gi:11391287 /DB_XREF=UI-R-CA1-biy-c-10-0-UI.s1 /CLONE=UI-R-CA1-biy-c-10-0-UI /FEA=EST /CNT=4 /TID=Rn.44036.1 /TIER=ConsEnd /STK=2 /UG=Rn.44036 /UG_TITLE=ESTs, Highly similar to ACETYLCHOLINE RECEPTOR PROTEIN, BETA CHAIN PRECURSOR (R.norvegicus) BF403312 Cholinergic receptor, nicotinic, beta 1 (muscle) Chrnb1 24261 NM_012528 0001941 // postsynaptic membrane organization // inferred from electronic annotation /// 0001941 // postsynaptic membrane organization // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006936 // muscle contraction // inferred from electronic annotation /// 0006936 // muscle contraction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007271 // synaptic transmission, cholinergic // inferred from electronic annotation /// 0007271 // synaptic transmission, cholinergic // not recorded /// 0007274 // neuromuscular synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0035095 // behavioral response to nicotine // inferred from electronic annotation /// 0035095 // behavioral response to nicotine // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded /// 0048747 // muscle fiber development // inferred from electronic annotation /// 0048747 // muscle fiber development // not recorded /// 0050877 // neurological system process // inferred from electronic annotation /// 0050877 // neurological system process // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from mutant phenotype /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // not recorded /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from direct assay /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // not recorded /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015267 // channel activity // inferred from electronic annotation /// 0015267 // channel activity // not recorded /// 0015276 // ligand-gated ion channel activity // inferred from direct assay /// 0015464 // acetylcholine receptor activity // inferred from electronic annotation /// 0015464 // acetylcholine receptor activity // not recorded /// 0042166 // acetylcholine binding // not recorded /// 0042166 // acetylcholine binding // inferred from electronic annotation 1379871_at AI408117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408117 /DB_XREF=gi:4251621 /DB_XREF=EST236407 /CLONE=ROVEF49 /FEA=EST /CNT=4 /TID=Rn.18251.1 /TIER=ConsEnd /STK=2 /UG=Rn.18251 /UG_TITLE=ESTs, Weakly similar to I38155 DNA-binding regulatory factor X5 (H.sapiens) AI408117 regulatory factor X, 7 Rfx7 315804 NM_001127490 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1379872_at BG667371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667371 /DB_XREF=gi:13889293 /DB_XREF=DRABUA10 /CLONE=DRABUA10 /FEA=EST /CNT=4 /TID=Rn.59653.1 /TIER=ConsEnd /STK=2 /UG=Rn.59653 /UG_TITLE=ESTs BG667371 1379873_at BI276971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276971 /DB_XREF=gi:14922396 /DB_XREF=UI-R-CW0-bxo-f-05-0-UI.s1 /CLONE=UI-R-CW0-bxo-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.27073.1 /TIER=ConsEnd /STK=2 /UG=Rn.27073 /UG_TITLE=ESTs BI276971 zinc finger protein 59 LOC100360593 100360593 XM_002728721 1379874_at BE107929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107929 /DB_XREF=gi:8500034 /DB_XREF=UI-R-CA0-awy-d-09-0-UI.s1 /CLONE=UI-R-CA0-awy-d-09-0-UI /FEA=EST /CNT=4 /TID=Rn.8504.2 /TIER=ConsEnd /STK=2 /UG=Rn.8504 /UG_TITLE=ESTs BE107929 mitochondrial ribosomal protein L51 Mrpl51 297601 NM_001106621 0006412 // translation // not recorded 0005739 // mitochondrion // not recorded /// 0005761 // mitochondrial ribosome // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // not recorded 1379875_at AA957406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957406 /DB_XREF=gi:4277296 /DB_XREF=UI-R-E1-fu-c-10-0-UI.s1 /CLONE=UI-R-E1-fu-c-10-0-UI /FEA=EST /CNT=4 /TID=Rn.23116.1 /TIER=ConsEnd /STK=2 /UG=Rn.23116 /UG_TITLE=ESTs AA957406 1379876_at AI407943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407943 /DB_XREF=gi:4251447 /DB_XREF=EST236233 /CLONE=ROVEE66 /FEA=EST /CNT=4 /TID=Rn.44032.1 /TIER=ConsEnd /STK=2 /UG=Rn.44032 /UG_TITLE=ESTs AI407943 component of oligomeric golgi complex 7 Cog7 293456 NM_001033889 0006486 // protein glycosylation // inferred from electronic annotation /// 0006486 // protein glycosylation // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0033365 // protein localization in organelle // not recorded /// 0033365 // protein localization in organelle // inferred from electronic annotation /// 0034067 // protein localization in Golgi apparatus // inferred from electronic annotation /// 0034067 // protein localization in Golgi apparatus // not recorded /// 0050821 // protein stabilization // inferred from electronic annotation /// 0050821 // protein stabilization // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0017119 // Golgi transport complex // inferred from electronic annotation /// 0017119 // Golgi transport complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379877_at BI296191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296191 /DB_XREF=gi:14960385 /DB_XREF=UI-R-DK0-cex-d-08-0-UI.s1 /CLONE=UI-R-DK0-cex-d-08-0-UI /FEA=EST /CNT=4 /TID=Rn.33031.1 /TIER=ConsEnd /STK=2 /UG=Rn.33031 /UG_TITLE=ESTs BI296191 zinc finger and AT hook domain containing Zfat 362925 NM_001134957 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1379878_at AW533998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533998 /DB_XREF=gi:7176412 /DB_XREF=UI-R-C4-alr-g-02-0-UI.s1 /CLONE=UI-R-C4-alr-g-02-0-UI /FEA=EST /CNT=4 /TID=Rn.48230.1 /TIER=ConsEnd /STK=2 /UG=Rn.48230 /UG_TITLE=ESTs AW533998 1379879_at AI411294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411294 /DB_XREF=gi:4254798 /DB_XREF=EST239588 /CLONE=RKIEO39 /FEA=EST /CNT=4 /TID=Rn.43391.1 /TIER=ConsEnd /STK=2 /UG=Rn.43391 /UG_TITLE=ESTs AI411294 1379880_at AI102926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102926 /DB_XREF=gi:3707562 /DB_XREF=EST212215 /CLONE=REMBV04 /FEA=EST /CNT=4 /TID=Rn.23304.1 /TIER=ConsEnd /STK=2 /UG=Rn.23304 /UG_TITLE=ESTs AI102926 1379881_at BI304043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI304043 /DB_XREF=gi:14980323 /DB_XREF=UI-R-DR0-cjc-i-20-0-UI.s1 /CLONE=UI-R-DR0-cjc-i-20-0-UI /FEA=EST /CNT=4 /TID=Rn.13102.1 /TIER=ConsEnd /STK=2 /UG=Rn.13102 /UG_TITLE=ESTs, Weakly similar to POL1_HUMAN RETROVIRUS-RELATED POL POLYPROTEIN (H.sapiens) BI304043 1379882_a_at BE116018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116018 /DB_XREF=gi:8508123 /DB_XREF=UI-R-BS1-axy-e-09-0-UI.s1 /CLONE=UI-R-BS1-axy-e-09-0-UI /FEA=EST /CNT=4 /TID=Rn.18418.1 /TIER=ConsEnd /STK=2 /UG=Rn.18418 /UG_TITLE=ESTs BE116018 Discoidin domain receptor tyrosine kinase 2 Ddr2 685781 NM_031764 0001558 // regulation of cell growth // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005518 // collagen binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1379883_at AA859474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859474 /DB_XREF=gi:4230020 /DB_XREF=UI-R-E0-bv-e-10-0-UI.s1 /CLONE=UI-R-E0-bv-e-10-0-UI /FEA=EST /CNT=4 /TID=Rn.23186.1 /TIER=ConsEnd /STK=2 /UG=Rn.23186 /UG_TITLE=ESTs AA859474 1379884_at AA799621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799621 /DB_XREF=gi:4131418 /DB_XREF=EST189118 /CLONE=RHEAD26 /FEA=EST /CNT=4 /TID=Rn.22695.1 /TIER=ConsEnd /STK=2 /UG=Rn.22695 /UG_TITLE=ESTs AA799621 aspartate-beta-hydroxylase Asph 312981 NM_001098239 0007389 // pattern specification process // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0035108 // limb morphogenesis // not recorded /// 0042264 // peptidyl-aspartic acid hydroxylation // not recorded /// 0051480 // cytosolic calcium ion homeostasis // inferred from mutant phenotype /// 0060021 // palate development // not recorded /// 0060325 // face morphogenesis // not recorded 0016020 // membrane // inferred from electronic annotation 1379885_at BF282998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282998 /DB_XREF=gi:11214068 /DB_XREF=EST447589 /CLONE=RGIDW12 /FEA=EST /CNT=4 /TID=Rn.16024.1 /TIER=ConsEnd /STK=2 /UG=Rn.16024 /UG_TITLE=ESTs, Weakly similar to DIMETHYLANILINE MONOOXYGENASE (R.norvegicus) BF282998 flavin containing monooxygenase 4 Fmo4 246247 NM_144561 /// NM_144562 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031227 // intrinsic to endoplasmic reticulum membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004497 // monooxygenase activity // non-traceable author statement /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004499 // flavin-containing monooxygenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from electronic annotation 1379886_at AA997880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997880 /DB_XREF=gi:4285975 /DB_XREF=UI-R-C0-hu-g-09-0-UI.s1 /CLONE=UI-R-C0-hu-g-09-0-UI /FEA=EST /CNT=4 /TID=Rn.13013.1 /TIER=ConsEnd /STK=2 /UG=Rn.13013 /UG_TITLE=ESTs AA997880 1379887_at BI290897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290897 /DB_XREF=gi:14949916 /DB_XREF=UI-R-DK0-cgi-g-10-0-UI.s1 /CLONE=UI-R-DK0-cgi-g-10-0-UI /FEA=EST /CNT=4 /TID=Rn.27509.1 /TIER=ConsEnd /STK=2 /UG=Rn.27509 /UG_TITLE=ESTs, Moderately similar to GCF_HUMAN GC-RICH SEQUENCE DNA-BINDING FACTOR (H.sapiens) BI290897 similar to chromosome 2 open reading frame 3; transcription factor 9 (binds GC-rich sequences) RGD1304792 312474 NM_001134554 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379888_at AA945268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945268 /DB_XREF=gi:3105184 /DB_XREF=EST200767 /CLONE=RLIAI85 /FEA=EST /CNT=4 /TID=Rn.7850.1 /TIER=ConsEnd /STK=2 /UG=Rn.7850 /UG_TITLE=ESTs AA945268 1379889_at AW527269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527269 /DB_XREF=gi:7169683 /DB_XREF=UI-R-BO1-ajs-d-06-0-UI.s1 /CLONE=UI-R-BO1-ajs-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.20276.1 /TIER=ConsEnd /STK=2 /UG=Rn.20276 /UG_TITLE=ESTs, Moderately similar to LAMININ GAMMA-2 CHAIN PRECURSOR (M.musculus) AW527269 laminin, gamma 2 Lamc2 192362 NM_001100640 0007155 // cell adhesion // inferred from electronic annotation /// 0031581 // hemidesmosome assembly // not recorded 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from direct assay /// 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005607 // laminin-2 complex // inferred from direct assay /// 0005610 // laminin-5 complex // inferred from electronic annotation /// 0005610 // laminin-5 complex // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded 1379890_at AI547434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547434 /DB_XREF=gi:4464922 /DB_XREF=UI-R-C3-tk-e-05-0-UI.s1 /CLONE=UI-R-C3-tk-e-05-0-UI /FEA=EST /CNT=4 /TID=Rn.43470.1 /TIER=ConsEnd /STK=2 /UG=Rn.43470 /UG_TITLE=ESTs AI547434 1379891_at AI454858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454858 /DB_XREF=gi:4296665 /DB_XREF=UI-R-BT0-qk-g-09-0-UI.s1 /CLONE=UI-R-BT0-qk-g-09-0-UI /FEA=EST /CNT=4 /TID=Rn.34814.1 /TIER=ConsEnd /STK=2 /UG=Rn.34814 /UG_TITLE=ESTs AI454858 shisa homolog 5 (Xenopus laevis) Shisa5 301013 NM_001006989 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0004871 // signal transducer activity // not recorded /// 0050699 // WW domain binding // not recorded 1379892_at AI385306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385306 /DB_XREF=gi:4198088 /DB_XREF=UI-R-C2-mw-e-06-0-UI.s2 /CLONE=UI-R-C2-mw-e-06-0-UI /FEA=EST /CNT=4 /TID=Rn.20586.1 /TIER=ConsEnd /STK=2 /UG=Rn.20586 /UG_TITLE=ESTs AI385306 1379893_at AI044998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044998 /DB_XREF=gi:3291817 /DB_XREF=UI-R-C1-ke-e-11-0-UI.s1 /CLONE=UI-R-C1-ke-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.20827.1 /TIER=ConsEnd /STK=2 /UG=Rn.20827 /UG_TITLE=ESTs AI044998 1379894_at AI501165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501165 /DB_XREF=gi:4399016 /DB_XREF=UI-R-C2p-rt-b-08-0-UI.s1 /CLONE=UI-R-C2p-rt-b-08-0-UI /FEA=EST /CNT=4 /TID=Rn.54764.1 /TIER=ConsEnd /STK=2 /UG=Rn.54764 /UG_TITLE=ESTs AI501165 similar to 3632451O06Rik protein RGD1310110 361032 NM_001108374 0005488 // binding // inferred from electronic annotation 1379895_at BF419411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419411 /DB_XREF=gi:11407400 /DB_XREF=UI-R-CA1-bnr-d-03-0-UI.s1 /CLONE=UI-R-CA1-bnr-d-03-0-UI /FEA=EST /CNT=4 /TID=Rn.63506.1 /TIER=ConsEnd /STK=2 /UG=Rn.63506 /UG_TITLE=ESTs BF419411 1379896_at BM390256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390256 /DB_XREF=gi:18190309 /DB_XREF=UI-R-CN1-cjq-m-15-0-UI.s1 /CLONE=UI-R-CN1-cjq-m-15-0-UI /FEA=EST /CNT=4 /TID=Rn.43551.1 /TIER=ConsEnd /STK=2 /UG=Rn.43551 /UG_TITLE=ESTs BM390256 DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 Ddx42 303607 NM_001107059 0008104 // protein localization // not recorded /// 0045767 // regulation of anti-apoptosis // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1379897_at AI535567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535567 /DB_XREF=gi:4449702 /DB_XREF=UI-R-C3-ta-h-11-0-UI.s1 /CLONE=UI-R-C3-ta-h-11-0-UI /FEA=EST /CNT=4 /TID=Rn.43179.1 /TIER=ConsEnd /STK=2 /UG=Rn.43179 /UG_TITLE=ESTs AI535567 1379898_at AI030607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030607 /DB_XREF=gi:3248433 /DB_XREF=UI-R-C0-jh-b-11-0-UI.s1 /CLONE=UI-R-C0-jh-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.6443.1 /TIER=ConsEnd /STK=2 /UG=Rn.6443 /UG_TITLE=ESTs AI030607 1379899_at BI298010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298010 /DB_XREF=gi:14974290 /DB_XREF=UI-R-CV2-che-c-12-0-UI.s1 /CLONE=UI-R-CV2-che-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.19126.1 /TIER=ConsEnd /STK=2 /UG=Rn.19126 /UG_TITLE=ESTs BI298010 1379900_at AI043697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043697 /DB_XREF=gi:3290432 /DB_XREF=UI-R-C0-jl-f-03-0-UI.s1 /CLONE=UI-R-C0-jl-f-03-0-UI /FEA=EST /CNT=4 /TID=Rn.18691.1 /TIER=ConsEnd /STK=2 /UG=Rn.18691 /UG_TITLE=ESTs AI043697 1379901_at BG375857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375857 /DB_XREF=gi:13300355 /DB_XREF=UI-R-CT0-buf-g-04-0-UI.s1 /CLONE=UI-R-CT0-buf-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.18482.1 /TIER=ConsEnd /STK=2 /UG=Rn.18482 /UG_TITLE=ESTs, Weakly similar to T46906 hypothetical protein DKFZp761D0223.1 (H.sapiens) BG375857 TBC1 domain family, member 17 Tbc1d17 292886 NM_001106258 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1379902_at BE108170 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108170 /DB_XREF=gi:8500315 /DB_XREF=UI-R-BS1-ayw-f-09-0-UI.s1 /CLONE=UI-R-BS1-ayw-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.19055.1 /TIER=ConsEnd /STK=2 /UG=Rn.19055 /UG_TITLE=ESTs BE108170 1379903_at AI059853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059853 /DB_XREF=gi:3333630 /DB_XREF=UI-R-C1-kr-f-09-0-UI.s1 /CLONE=UI-R-C1-kr-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.19293.1 /TIER=ConsEnd /STK=2 /UG=Rn.19293 /UG_TITLE=ESTs AI059853 1379904_at AI070203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070203 /DB_XREF=gi:3396454 /DB_XREF=UI-R-Y0-lu-a-06-0-UI.s1 /CLONE=UI-R-Y0-lu-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.19687.1 /TIER=ConsEnd /STK=2 /UG=Rn.19687 /UG_TITLE=ESTs, Weakly similar to T23511 hypothetical protein K08H10.9 - Caenorhabditis elegans (C.elegans) AI070203 trafficking protein particle complex 6A Trappc6a 680465 NM_001109410 0006182 // cGMP biosynthetic process // inferred from electronic annotation 0004383 // guanylate cyclase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation 1379905_at BM386324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386324 /DB_XREF=gi:18186377 /DB_XREF=UI-R-CN1-cjf-j-23-0-UI.s1 /CLONE=UI-R-CN1-cjf-j-23-0-UI /FEA=EST /CNT=4 /TID=Rn.37191.1 /TIER=ConsEnd /STK=2 /UG=Rn.37191 /UG_TITLE=ESTs, Highly similar to GTB1 MOUSE GTP-BINDING PROTEIN 1 (M.musculus) BM386324 GTP binding protein 1 Gtpbp1 300077 NM_001130496 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1379906_at BM385311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385311 /DB_XREF=gi:18185364 /DB_XREF=UI-R-EB1-clf-p-24-0-UI.s1 /CLONE=UI-R-EB1-clf-p-24-0-UI /FEA=EST /CNT=4 /TID=Rn.16400.1 /TIER=ConsEnd /STK=2 /UG=Rn.16400 /UG_TITLE=ESTs BM385311 ATPase, Na+/K+ transporting, beta 2 polypeptide Atp1b2 24214 NM_012507 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay 0005391 // sodium:potassium-exchanging ATPase activity // inferred from direct assay /// 0005391 // sodium:potassium-exchanging ATPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379907_at AI044838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044838 /DB_XREF=gi:3291657 /DB_XREF=UI-R-C1-ki-g-05-0-UI.s1 /CLONE=UI-R-C1-ki-g-05-0-UI /FEA=EST /CNT=4 /TID=Rn.16031.1 /TIER=ConsEnd /STK=2 /UG=Rn.16031 /UG_TITLE=ESTs AI044838 1379908_at BE104836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104836 /DB_XREF=gi:8496936 /DB_XREF=UI-R-BX0-aru-c-04-0-UI.s1 /CLONE=UI-R-BX0-aru-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.16079.1 /TIER=ConsEnd /STK=2 /UG=Rn.16079 /UG_TITLE=ESTs BE104836 1379909_at AA963315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963315 /DB_XREF=gi:4278239 /DB_XREF=UI-R-E1-gi-c-05-0-UI.s1 /CLONE=UI-R-E1-gi-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.11438.1 /TIER=ConsEnd /STK=2 /UG=Rn.11438 /UG_TITLE=ESTs AA963315 G kinase anchoring protein 1 Gkap1 361202 NM_001012160 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379910_at AI136097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136097 /DB_XREF=gi:3636874 /DB_XREF=UI-R-C2p-ny-b-02-0-UI.s1 /CLONE=UI-R-C2p-ny-b-02-0-UI /FEA=EST /CNT=4 /TID=Rn.23657.1 /TIER=ConsEnd /STK=2 /UG=Rn.23657 /UG_TITLE=ESTs, Highly similar to UAP1_HUMAN UDP-N-ACETYLHEXOSAMINE PYROPHOSPHORYLASE (H.sapiens) AI136097 UDP-N-acteylglucosamine pyrophosphorylase 1 Uap1 498272 NM_001191930 /// XM_001072323 /// XM_573497 0006047 // UDP-N-acetylglucosamine metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay 0003977 // UDP-N-acetylglucosamine diphosphorylase activity // inferred from direct assay /// 0005529 // sugar binding // inferred from direct assay /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1379911_at BI281823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281823 /DB_XREF=gi:14931959 /DB_XREF=UI-R-CU0s-cbt-a-01-0-UI.s1 /CLONE=UI-R-CU0s-cbt-a-01-0-UI /FEA=EST /CNT=4 /TID=Rn.23108.1 /TIER=ConsEnd /STK=2 /UG=Rn.23108 /UG_TITLE=ESTs, Highly similar to I37275 death-associated protein kinase (H.sapiens) BI281823 death associated protein kinase 1 Dapk1 306722 NM_001107335 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded 1379912_at BM392147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392147 /DB_XREF=gi:18192200 /DB_XREF=UI-R-DO1-ckp-e-02-0-UI.s1 /CLONE=UI-R-DO1-ckp-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.56881.1 /TIER=ConsEnd /STK=2 /UG=Rn.56881 /UG_TITLE=ESTs BM392147 1379913_at BE100916 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100916 /DB_XREF=gi:8492817 /DB_XREF=UI-R-BJ1-aug-a-04-0-UI.s1 /CLONE=UI-R-BJ1-aug-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.49236.1 /TIER=ConsEnd /STK=2 /UG=Rn.49236 /UG_TITLE=ESTs BE100916 1379914_at AI716050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716050 /DB_XREF=gi:5033303 /DB_XREF=UI-R-Y0-acd-d-10-0-UI.s1 /CLONE=UI-R-Y0-acd-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.49407.1 /TIER=ConsEnd /STK=2 /UG=Rn.49407 /UG_TITLE=ESTs AI716050 Kruppel-like factor 11 Klf11 313994 NM_001037354 0030097 // hemopoiesis // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1379915_at BF393083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393083 /DB_XREF=gi:11377943 /DB_XREF=UI-R-CA0-bgu-c-11-0-UI.s1 /CLONE=UI-R-CA0-bgu-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.57573.1 /TIER=ConsEnd /STK=2 /UG=Rn.57573 /UG_TITLE=ESTs BF393083 1379916_at BE108030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108030 /DB_XREF=gi:8500135 /DB_XREF=UI-R-CA0-awz-f-02-0-UI.s1 /CLONE=UI-R-CA0-awz-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.49185.1 /TIER=ConsEnd /STK=2 /UG=Rn.49185 /UG_TITLE=ESTs BE108030 1379917_at AW528106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528106 /DB_XREF=gi:7170520 /DB_XREF=UI-R-BT1-akh-g-12-0-UI.s1 /CLONE=UI-R-BT1-akh-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.64145.1 /TIER=ConsEnd /STK=2 /UG=Rn.64145 /UG_TITLE=ESTs AW528106 1379918_at BE115821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115821 /DB_XREF=gi:8507926 /DB_XREF=UI-R-BS1-axv-c-03-0-UI.s1 /CLONE=UI-R-BS1-axv-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.53886.1 /TIER=ConsEnd /STK=2 /UG=Rn.53886 /UG_TITLE=ESTs BE115821 1379919_at AI575276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575276 /DB_XREF=gi:4559652 /DB_XREF=UI-R-Y0-vc-f-08-0-UI.s1 /CLONE=UI-R-Y0-vc-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.38427.1 /TIER=ConsEnd /STK=2 /UG=Rn.38427 /UG_TITLE=ESTs AI575276 CASP8 and FADD-like apoptosis regulator Cflar 117279 NM_001033864 /// NM_057138 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043154 // negative regulation of caspase activity // not recorded 0005737 // cytoplasm // not recorded /// 0031265 // CD95 death-inducing signaling complex // inferred from direct assay 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation 1379920_at BG671844 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671844 /DB_XREF=gi:13893943 /DB_XREF=DRNBYF10 /CLONE=DRNBYF10 /FEA=EST /CNT=3 /TID=Rn.47173.1 /TIER=ConsEnd /STK=2 /UG=Rn.47173 /UG_TITLE=ESTs BG671844 1379921_at AA799521 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799521 /DB_XREF=gi:2862476 /DB_XREF=EST189018 /CLONE=RHEAC09 /FEA=EST /CNT=3 /TID=Rn.41372.1 /TIER=ConsEnd /STK=2 /UG=Rn.41372 /UG_TITLE=ESTs AA799521 fibronectin type III and SPRY domain containing 2 Fsd2 308779 NM_001191627 /// XM_001062337 /// XM_002725635 /// XM_002728770 /// XM_218860 1379922_at BM389053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389053 /DB_XREF=gi:18189106 /DB_XREF=UI-R-DZ0-cko-h-11-0-UI.s1 /CLONE=UI-R-DZ0-cko-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.76187.1 /TIER=ConsEnd /STK=2 /UG=Rn.76187 /UG_TITLE=ESTs BM389053 1379923_at AW525902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525902 /DB_XREF=gi:7168287 /DB_XREF=UI-R-BO1-aiw-b-02-0-UI.s1 /CLONE=UI-R-BO1-aiw-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.49073.1 /TIER=ConsEnd /STK=2 /UG=Rn.49073 /UG_TITLE=ESTs AW525902 1379924_at AI178193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178193 /DB_XREF=gi:3728831 /DB_XREF=EST221858 /CLONE=RPLCN37 /FEA=EST /CNT=3 /TID=Rn.29189.1 /TIER=ConsEnd /STK=2 /UG=Rn.29189 /UG_TITLE=ESTs, Weakly similar to PHOSPHATIDYLINOSITOL TRANSFER PROTEIN BETA ISOFORM (R.norvegicus) AI178193 phosphatidylinositol transfer protein, membrane-associated 2 Pitpnm2 304474 NM_001107139 0006810 // transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005625 // soluble fraction // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0046872 // metal ion binding // inferred from electronic annotation 1379925_at AW523500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523500 /DB_XREF=gi:7165885 /DB_XREF=UI-R-BO0-aho-h-03-0-UI.s1 /CLONE=UI-R-BO0-aho-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.45659.1 /TIER=ConsEnd /STK=2 /UG=Rn.45659 /UG_TITLE=ESTs AW523500 1379926_at BG380347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380347 /DB_XREF=gi:13304819 /DB_XREF=UI-R-CT0-btw-a-11-0-UI.s1 /CLONE=UI-R-CT0-btw-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.32584.1 /TIER=ConsEnd /STK=2 /UG=Rn.32584 /UG_TITLE=ESTs BG380347 1379927_at AI113197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113197 /DB_XREF=gi:3513146 /DB_XREF=UI-R-C2p-np-f-08-0-UI.s1 /CLONE=UI-R-C2p-np-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.26946.1 /TIER=ConsEnd /STK=2 /UG=Rn.26946 /UG_TITLE=ESTs AI113197 1379928_at AW529192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529192 /DB_XREF=gi:7171606 /DB_XREF=UI-R-BT1-akd-a-10-0-UI.s1 /CLONE=UI-R-BT1-akd-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.47116.1 /TIER=ConsEnd /STK=2 /UG=Rn.47116 /UG_TITLE=ESTs AW529192 COP9 constitutive photomorphogenic homolog subunit 3 (Arabidopsis) Cops3 287367 NM_001004200 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0008180 // signalosome // inferred from electronic annotation /// 0008180 // signalosome // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379929_at BF405278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405278 /DB_XREF=gi:11393253 /DB_XREF=UI-R-CA1-biw-e-05-0-UI.s1 /CLONE=UI-R-CA1-biw-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.64223.1 /TIER=ConsEnd /STK=2 /UG=Rn.64223 /UG_TITLE=ESTs BF405278 1379930_at AI171497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171497 /DB_XREF=gi:3711537 /DB_XREF=EST217460 /CLONE=RMUBL67 /FEA=EST /CNT=3 /TID=Rn.29481.1 /TIER=ConsEnd /STK=2 /UG=Rn.29481 /UG_TITLE=ESTs AI171497 1379931_at BF398819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398819 /DB_XREF=gi:11383820 /DB_XREF=UI-R-CA1-biz-i-01-0-UI.s1 /CLONE=UI-R-CA1-biz-i-01-0-UI /FEA=EST /CNT=3 /TID=Rn.64180.1 /TIER=ConsEnd /STK=2 /UG=Rn.64180 /UG_TITLE=ESTs BF398819 1379932_at BG378827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378827 /DB_XREF=gi:13303299 /DB_XREF=UI-R-CV1-bvt-c-10-0-UI.s1 /CLONE=UI-R-CV1-bvt-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.45798.1 /TIER=ConsEnd /STK=2 /UG=Rn.45798 /UG_TITLE=ESTs BG378827 chloride channel 4-2 Clcn4-2 60586 NM_022198 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // not recorded /// 0006821 // chloride transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005247 // voltage-gated chloride channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // not recorded /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation 1379933_at AI409737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409737 /DB_XREF=gi:4253241 /DB_XREF=EST238029 /CLONE=RPLDI28 /FEA=EST /CNT=3 /TID=Rn.43586.1 /TIER=ConsEnd /STK=2 /UG=Rn.43586 /UG_TITLE=ESTs AI409737 1379934_at BI285676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285676 /DB_XREF=gi:14939561 /DB_XREF=UI-R-CT0s-cas-b-12-0-UI.s1 /CLONE=UI-R-CT0s-cas-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.66974.1 /TIER=ConsEnd /STK=2 /UG=Rn.66974 /UG_TITLE=ESTs BI285676 1379935_at BF419899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419899 /DB_XREF=gi:11407888 /DB_XREF=UI-R-BJ2-bph-e-05-0-UI.s1 /CLONE=UI-R-BJ2-bph-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.26815.1 /TIER=ConsEnd /STK=2 /UG=Rn.26815 /UG_TITLE=ESTs, Highly similar to SY07_RAT SMALL INDUCIBLE CYTOKINE A7 PRECURSOR (MONOCYTE CHEMOTACTIC PROTEIN 3) (MCP-3) (MONOCYTE CHEMOATTRACTANT PROTEIN 3) (R.norvegicus) BF419899 chemokine (C-C motif) ligand 7 Ccl7 287561 NM_001007612 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation 1379936_at AA875132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875132 /DB_XREF=gi:4231013 /DB_XREF=UI-R-E0-bu-e-04-0-UI.s2 /CLONE=UI-R-E0-bu-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.22628.1 /TIER=ConsEnd /STK=2 /UG=Rn.22628 /UG_TITLE=ESTs AA875132 1379937_at AW526968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526968 /DB_XREF=gi:7169382 /DB_XREF=UI-R-BO1-ajg-a-10-0-UI.s1 /CLONE=UI-R-BO1-ajg-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.46383.1 /TIER=ConsEnd /STK=2 /UG=Rn.46383 /UG_TITLE=ESTs, Weakly similar to FIG1 MOUSE FIG-1 PROTEIN PRECURSOR (M.musculus) AW526968 1379938_at BE109444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109444 /DB_XREF=gi:8501589 /DB_XREF=UI-R-BJ1-aut-f-10-0-UI.s1 /CLONE=UI-R-BJ1-aut-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.7458.1 /TIER=ConsEnd /STK=2 /UG=Rn.7458 /UG_TITLE=ESTs BE109444 1379939_a_at AW526107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526107 /DB_XREF=gi:7168492 /DB_XREF=UI-R-BO1-aiz-c-09-0-UI.s1 /CLONE=UI-R-BO1-aiz-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.16932.1 /TIER=ConsEnd /STK=2 /UG=Rn.16932 /UG_TITLE=ESTs AW526107 Similar to HT021 RGD1306063 289928 NM_001106026 1379940_at BE101968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101968 /DB_XREF=gi:8494066 /DB_XREF=UI-R-BT1-aqi-f-12-0-UI.s1 /CLONE=UI-R-BT1-aqi-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.47097.1 /TIER=ConsEnd /STK=2 /UG=Rn.47097 /UG_TITLE=ESTs BE101968 1379941_at BM384685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384685 /DB_XREF=gi:18184738 /DB_XREF=UI-R-DY0-ckl-n-21-0-UI.s1 /CLONE=UI-R-DY0-ckl-n-21-0-UI /FEA=EST /CNT=3 /TID=Rn.50779.1 /TIER=ConsEnd /STK=2 /UG=Rn.50779 /UG_TITLE=ESTs BM384685 1379942_at AA858564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858564 /DB_XREF=gi:4229896 /DB_XREF=UI-R-E0-bq-e-08-0-UI.s1 /CLONE=UI-R-E0-bq-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.17031.1 /TIER=ConsEnd /STK=2 /UG=Rn.17031 /UG_TITLE=ESTs AA858564 SRY (sex determining region Y)-box 2 Sox2 499593 NM_001109181 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001649 // osteoblast differentiation // not recorded /// 0001654 // eye development // not recorded /// 0001708 // cell fate specification // not recorded /// 0002052 // positive regulation of neuroblast proliferation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0009611 // response to wounding // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0019827 // stem cell maintenance // not recorded /// 0021879 // forebrain neuron differentiation // not recorded /// 0021983 // pituitary gland development // not recorded /// 0021984 // adenohypophysis development // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030539 // male genitalia development // not recorded /// 0030858 // positive regulation of epithelial cell differentiation // not recorded /// 0030900 // forebrain development // not recorded /// 0030910 // olfactory placode formation // not recorded /// 0032526 // response to retinoic acid // not recorded /// 0035019 // somatic stem cell maintenance // not recorded /// 0042221 // response to chemical stimulus // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0043281 // regulation of caspase activity // not recorded /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0043586 // tongue development // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045668 // negative regulation of osteoblast differentiation // not recorded /// 0045747 // positive regulation of Notch signaling pathway // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046148 // pigment biosynthetic process // not recorded /// 0048286 // lung alveolus development // not recorded /// 0048568 // embryonic organ development // not recorded /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded /// 0048663 // neuron fate commitment // not recorded /// 0048839 // inner ear development // not recorded /// 0048852 // diencephalon morphogenesis // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // not recorded /// 0050973 // detection of mechanical stimulus involved in equilibrioception // not recorded /// 0060042 // retina morphogenesis in camera-type eye // not recorded /// 0060235 // lens induction in camera-type eye // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // not recorded /// 0070848 // response to growth factor stimulus // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0035198 // miRNA binding // not recorded /// 0043565 // sequence-specific DNA binding // not recorded 1379943_at AA943822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943822 /DB_XREF=gi:3103738 /DB_XREF=EST199321 /CLONE=RBRAQ16 /FEA=EST /CNT=3 /TID=Rn.45230.1 /TIER=ConsEnd /STK=2 /UG=Rn.45230 /UG_TITLE=ESTs AA943822 1379944_at BE112610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112610 /DB_XREF=gi:8504715 /DB_XREF=UI-R-BJ1-avn-f-06-0-UI.s1 /CLONE=UI-R-BJ1-avn-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.21640.1 /TIER=ConsEnd /STK=2 /UG=Rn.21640 /UG_TITLE=ESTs BE112610 1379945_at AI137329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137329 /DB_XREF=gi:3638106 /DB_XREF=UI-R-C2p-og-a-07-0-UI.s1 /CLONE=UI-R-C2p-og-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.27395.1 /TIER=ConsEnd /STK=2 /UG=Rn.27395 /UG_TITLE=ESTs AI137329 1379946_at AW526208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526208 /DB_XREF=gi:7168593 /DB_XREF=UI-R-BO1-aju-d-05-0-UI.s1 /CLONE=UI-R-BO1-aju-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.46118.1 /TIER=ConsEnd /STK=2 /UG=Rn.46118 /UG_TITLE=ESTs AW526208 1379947_at AA925321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925321 /DB_XREF=gi:4236512 /DB_XREF=UI-R-A1-ek-g-09-0-UI.s1 /CLONE=UI-R-A1-ek-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.15496.1 /TIER=ConsEnd /STK=2 /UG=Rn.15496 /UG_TITLE=ESTs AA925321 1379948_at BM392001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392001 /DB_XREF=gi:18192054 /DB_XREF=UI-R-DO1-cmk-g-14-0-UI.s1 /CLONE=UI-R-DO1-cmk-g-14-0-UI /FEA=EST /CNT=3 /TID=Rn.71405.1 /TIER=ConsEnd /STK=2 /UG=Rn.71405 /UG_TITLE=ESTs BM392001 1379949_at AI010265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010265 /DB_XREF=gi:4133212 /DB_XREF=EST204716 /CLONE=RLUBW14 /FEA=EST /CNT=3 /TID=Rn.30604.1 /TIER=ConsEnd /STK=2 /UG=Rn.30604 /UG_TITLE=ESTs AI010265 transcription factor B1, mitochondrial Tfb1m 308140 NM_181474 0000154 // rRNA modification // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded 0000179 // rRNA (adenine-N6,N6-)-dimethyltransferase activity // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008649 // rRNA methyltransferase activity // inferred from electronic annotation /// 0016433 // rRNA (adenine) methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1379950_at AI071581 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071581 /DB_XREF=gi:3397796 /DB_XREF=UI-R-C1-ky-g-04-0-UI.s2 /CLONE=UI-R-C1-ky-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.20565.1 /TIER=ConsEnd /STK=2 /UG=Rn.20565 /UG_TITLE=ESTs AI071581 1379951_at BE104039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104039 /DB_XREF=gi:8496139 /DB_XREF=UI-R-BX0-ark-a-08-0-UI.s1 /CLONE=UI-R-BX0-ark-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.50598.1 /TIER=ConsEnd /STK=2 /UG=Rn.50598 /UG_TITLE=ESTs BE104039 SNF2 histone linker PHD RING helicase Shprh 308282 NM_001107470 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379952_at BF398685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398685 /DB_XREF=gi:11383682 /DB_XREF=UI-R-BS2-ber-f-09-0-UI.s1 /CLONE=UI-R-BS2-ber-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.33260.1 /TIER=ConsEnd /STK=2 /UG=Rn.33260 /UG_TITLE=ESTs BF398685 1379953_at AI712697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712697 /DB_XREF=gi:5016497 /DB_XREF=UI-R-AF1-aau-d-11-0-UI.s1 /CLONE=UI-R-AF1-aau-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.40914.1 /TIER=ConsEnd /STK=2 /UG=Rn.40914 /UG_TITLE=ESTs AI712697 PTC7 protein phosphatase homolog (S. cerevisiae) Pptc7 304488 NM_001107141 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation 1379954_at BF413959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413959 /DB_XREF=gi:11401948 /DB_XREF=UI-R-BJ2-bok-g-07-0-UI.s1 /CLONE=UI-R-BJ2-bok-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.64102.1 /TIER=ConsEnd /STK=2 /UG=Rn.64102 /UG_TITLE=ESTs BF413959 E74-like factor 2 Elf2 361944 NM_001012181 /// NM_001033909 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1379955_at BE096222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096222 /DB_XREF=gi:8487153 /DB_XREF=UI-R-BU0-apc-e-01-0-UI.s1 /CLONE=UI-R-BU0-apc-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.64230.1 /TIER=ConsEnd /STK=2 /UG=Rn.64230 /UG_TITLE=ESTs BE096222 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008158 // hedgehog receptor activity // inferred from electronic annotation 1379956_at AI013395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013395 /DB_XREF=gi:3227451 /DB_XREF=EST208070 /CLONE=RSPBK43 /FEA=EST /CNT=3 /TID=Rn.23460.1 /TIER=ConsEnd /STK=2 /UG=Rn.23460 /UG_TITLE=ESTs AI013395 1379957_at BE107457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107457 /DB_XREF=gi:8499562 /DB_XREF=UI-R-BS1-ayt-h-06-0-UI.s1 /CLONE=UI-R-BS1-ayt-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.50655.1 /TIER=ConsEnd /STK=2 /UG=Rn.50655 /UG_TITLE=ESTs BE107457 schlafen 8 Slfn8 303378 NM_001013970 0005622 // intracellular // not recorded /// 0005634 // nucleus // not recorded 0005524 // ATP binding // inferred from electronic annotation 1379958_at BE102434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102434 /DB_XREF=gi:8494533 /DB_XREF=UI-R-BT1-aqm-f-01-0-UI.s1 /CLONE=UI-R-BT1-aqm-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.32714.1 /TIER=ConsEnd /STK=2 /UG=Rn.32714 /UG_TITLE=ESTs BE102434 1379959_at BI280216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280216 /DB_XREF=gi:14928775 /DB_XREF=UI-R-CS0s-cbk-f-09-0-UI.s1 /CLONE=UI-R-CS0s-cbk-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.78034.1 /TIER=ConsEnd /STK=2 /UG=Rn.78034 /UG_TITLE=ESTs BI280216 tryptophan rich basic protein Wrb 288233 NM_199373 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1379960_at AI406705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406705 /DB_XREF=gi:4250209 /DB_XREF=EST234992 /CLONE=ROVDV46 /FEA=EST /CNT=3 /TID=Rn.79236.1 /TIER=ConsEnd /STK=2 /UG=Rn.79236 /UG_TITLE=ESTs AI406705 1379961_at AW534043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534043 /DB_XREF=gi:7176457 /DB_XREF=UI-R-C4-alm-d-09-0-UI.s1 /CLONE=UI-R-C4-alm-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.48244.1 /TIER=ConsEnd /STK=2 /UG=Rn.48244 /UG_TITLE=ESTs AW534043 1379962_at AI013378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013378 /DB_XREF=gi:3227434 /DB_XREF=EST208053 /CLONE=RSPBK24 /FEA=EST /CNT=3 /TID=Rn.17996.1 /TIER=ConsEnd /STK=2 /UG=Rn.17996 /UG_TITLE=ESTs AI013378 1379963_at AW523457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523457 /DB_XREF=gi:7165842 /DB_XREF=UI-R-BO0-aho-d-08-0-UI.s1 /CLONE=UI-R-BO0-aho-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.53607.1 /TIER=ConsEnd /STK=2 /UG=Rn.53607 /UG_TITLE=ESTs AW523457 kinesin family member 3B Kif3b 296284 NM_001106529 0000090 // mitotic anaphase // inferred from expression pattern /// 0000910 // cytokinesis // inferred from expression pattern /// 0007018 // microtubule-based movement // inferred from electronic annotation 0005819 // spindle // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1379964_at BF417011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417011 /DB_XREF=gi:11405000 /DB_XREF=UI-R-CN0-bkw-h-09-0-UI.s1 /CLONE=UI-R-CN0-bkw-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.19233.1 /TIER=ConsEnd /STK=2 /UG=Rn.19233 /UG_TITLE=ESTs BF417011 1379965_at BE113082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113082 /DB_XREF=gi:8505187 /DB_XREF=UI-R-BJ1-awb-c-04-0-UI.s1 /CLONE=UI-R-BJ1-awb-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.52156.1 /TIER=ConsEnd /STK=2 /UG=Rn.52156 /UG_TITLE=ESTs BE113082 1379966_at BG380404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380404 /DB_XREF=gi:13304876 /DB_XREF=UI-R-CT0-btw-g-12-0-UI.s1 /CLONE=UI-R-CT0-btw-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.66744.1 /TIER=ConsEnd /STK=2 /UG=Rn.66744 /UG_TITLE=ESTs BG380404 1379967_at AI501039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501039 /DB_XREF=gi:4398890 /DB_XREF=UI-R-C2p-rs-g-06-0-UI.s1 /CLONE=UI-R-C2p-rs-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.35247.1 /TIER=ConsEnd /STK=2 /UG=Rn.35247 /UG_TITLE=ESTs AI501039 zinc finger protein 367 Zfp367 306695 NM_001012051 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1379968_at AW530531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530531 /DB_XREF=gi:7172945 /DB_XREF=UI-R-BT1-akp-b-11-0-UI.s1 /CLONE=UI-R-BT1-akp-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.49170.1 /TIER=ConsEnd /STK=2 /UG=Rn.49170 /UG_TITLE=ESTs, Highly similar to EPIT MOUSE EPITHIN (M.musculus) AW530531 1379969_at AW529033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529033 /DB_XREF=gi:7171487 /DB_XREF=UI-R-BT1-aka-g-08-0-UI.s1 /CLONE=UI-R-BT1-aka-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.43472.1 /TIER=ConsEnd /STK=2 /UG=Rn.43472 /UG_TITLE=ESTs, Highly similar to forkhead box J2 (Mus musculus) (M.musculus) AW529033 forkhead box J2 Foxj2 502886 NM_001109352 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1379970_at AW525048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525048 /DB_XREF=gi:7167433 /DB_XREF=UI-R-BJ0p-aim-c-04-0-UI.s1 /CLONE=UI-R-BJ0p-aim-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.45963.1 /TIER=ConsEnd /STK=2 /UG=Rn.45963 /UG_TITLE=ESTs AW525048 Eph receptor A4 Epha4 316539 NM_001162411 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007628 // adult walking behavior // not recorded 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005003 // ephrin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046875 // ephrin receptor binding // inferred from direct assay 1379971_at BE102241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102241 /DB_XREF=gi:8494340 /DB_XREF=UI-R-BT1-aqk-b-06-0-UI.s1 /CLONE=UI-R-BT1-aqk-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.46791.1 /TIER=ConsEnd /STK=2 /UG=Rn.46791 /UG_TITLE=ESTs BE102241 zinc finger CCCH type containing 6 Zc3h6 311415 NM_001107772 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1379972_at AI070438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070438 /DB_XREF=gi:3396689 /DB_XREF=UI-R-C2-mq-c-11-0-UI.s1 /CLONE=UI-R-C2-mq-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.19757.1 /TIER=ConsEnd /STK=2 /UG=Rn.19757 /UG_TITLE=ESTs, Moderately similar to T08795 hypothetical protein DKFZp586J1822.1 (H.sapiens) AI070438 male-specific lethal 3-like 2 (Drosophila) Msl3l2 309790 NM_001014032 0005634 // nucleus // inferred from electronic annotation 1379973_at AW530847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530847 /DB_XREF=gi:7173261 /DB_XREF=UI-R-BT1-aks-b-07-0-UI.s1 /CLONE=UI-R-BT1-aks-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.21231.1 /TIER=ConsEnd /STK=2 /UG=Rn.21231 /UG_TITLE=ESTs AW530847 1379974_at AI231419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231419 /DB_XREF=gi:3815299 /DB_XREF=EST228107 /CLONE=REMDJ85 /FEA=EST /CNT=3 /TID=Rn.37784.1 /TIER=ConsEnd /STK=2 /UG=Rn.37784 /UG_TITLE=ESTs AI231419 1379975_at AW529144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529144 /DB_XREF=gi:7171558 /DB_XREF=UI-R-BO1-ajp-e-08-0-UI.s1 /CLONE=UI-R-BO1-ajp-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.47101.1 /TIER=ConsEnd /STK=2 /UG=Rn.47101 /UG_TITLE=ESTs AW529144 1379976_at AI013509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013509 /DB_XREF=gi:3227565 /DB_XREF=EST208184 /CLONE=RSPBM48 /FEA=EST /CNT=3 /TID=Rn.31941.1 /TIER=ConsEnd /STK=2 /UG=Rn.31941 /UG_TITLE=ESTs AI013509 1379977_at AI176858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176858 /DB_XREF=gi:4134930 /DB_XREF=EST220461 /CLONE=ROVBX76 /FEA=EST /CNT=3 /TID=Rn.42186.1 /TIER=ConsEnd /STK=2 /UG=Rn.42186 /UG_TITLE=ESTs AI176858 ORAI calcium release-activated calcium modulator 3 Orai3 309000 NM_001014024 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1379978_at AW531484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531484 /DB_XREF=gi:7173898 /DB_XREF=UI-R-BO1-aji-e-07-0-UI.s1 /CLONE=UI-R-BO1-aji-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.72800.1 /TIER=ConsEnd /STK=2 /UG=Rn.72800 /UG_TITLE=ESTs, Moderately similar to T00364 hypothetical protein KIAA0673 (H.sapiens) AW531484 nephronophthisis 4 (juvenile) homolog (human) Nphp4 313749 NM_001037650 0005515 // protein binding // not recorded 1379979_at AI548961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548961 /DB_XREF=gi:4466449 /DB_XREF=UI-R-C3-tw-f-12-0-UI.s1 /CLONE=UI-R-C3-tw-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.21153.1 /TIER=ConsEnd /STK=2 /UG=Rn.21153 /UG_TITLE=ESTs AI548961 1379980_at BM386302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386302 /DB_XREF=gi:18186355 /DB_XREF=UI-R-CN1-cjf-f-23-0-UI.s1 /CLONE=UI-R-CN1-cjf-f-23-0-UI /FEA=EST /CNT=3 /TID=Rn.65990.1 /TIER=ConsEnd /STK=2 /UG=Rn.65990 /UG_TITLE=ESTs BM386302 1379981_at AI170356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170356 /DB_XREF=gi:3710396 /DB_XREF=EST216282 /CLONE=RLUCH31 /FEA=EST /CNT=3 /TID=Rn.18658.2 /TIER=ConsEnd /STK=2 /UG=Rn.18658 /UG_TITLE=ESTs, Highly similar to protein p84 (H.sapiens) AI170356 1379982_at BE117278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117278 /DB_XREF=gi:8509383 /DB_XREF=UI-R-BS1-ayh-h-06-0-UI.s1 /CLONE=UI-R-BS1-ayh-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.27516.1 /TIER=ConsEnd /STK=2 /UG=Rn.27516 /UG_TITLE=ESTs BE117278 nuclear receptor interacting protein 1 Nrip1 304157 NM_001100560 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001543 // ovarian follicle rupture // inferred from electronic annotation /// 0001543 // ovarian follicle rupture // not recorded /// 0019915 // lipid storage // inferred from electronic annotation /// 0019915 // lipid storage // not recorded /// 0030728 // ovulation // inferred from electronic annotation /// 0030728 // ovulation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0000118 // histone deacetylase complex // inferred from electronic annotation /// 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030331 // estrogen receptor binding // inferred from electronic annotation /// 0030331 // estrogen receptor binding // not recorded /// 0035257 // nuclear hormone receptor binding // not recorded /// 0035257 // nuclear hormone receptor binding // inferred from electronic annotation /// 0035259 // glucocorticoid receptor binding // inferred from electronic annotation /// 0035259 // glucocorticoid receptor binding // not recorded /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded /// 0042974 // retinoic acid receptor binding // not recorded /// 0042974 // retinoic acid receptor binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // not recorded 1379983_at BF394641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394641 /DB_XREF=gi:11379582 /DB_XREF=UI-R-CA0-bfy-b-06-0-UI.s1 /CLONE=UI-R-CA0-bfy-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.58317.1 /TIER=ConsEnd /STK=2 /UG=Rn.58317 /UG_TITLE=ESTs BF394641 1379984_at AI411147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411147 /DB_XREF=gi:4254651 /DB_XREF=EST239441 /CLONE=RKIET70 /FEA=EST /CNT=3 /TID=Rn.45005.1 /TIER=ConsEnd /STK=2 /UG=Rn.45005 /UG_TITLE=ESTs AI411147 1379985_at AW530768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530768 /DB_XREF=gi:7173182 /DB_XREF=UI-R-C4-alb-c-05-0-UI.s1 /CLONE=UI-R-C4-alb-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.47541.1 /TIER=ConsEnd /STK=2 /UG=Rn.47541 /UG_TITLE=ESTs AW530768 1379986_at BM390668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390668 /DB_XREF=gi:18190721 /DB_XREF=UI-R-CN1-cjr-k-08-0-UI.s1 /CLONE=UI-R-CN1-cjr-k-08-0-UI /FEA=EST /CNT=3 /TID=Rn.78751.1 /TIER=ConsEnd /STK=2 /UG=Rn.78751 /UG_TITLE=ESTs, Weakly similar to POL2 MOUSE RETROVIRUS-RELATED POL POLYPROTEIN (M.musculus) BM390668 1379987_at BE100570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100570 /DB_XREF=gi:8492465 /DB_XREF=UI-R-BJ1-auk-a-01-0-UI.s1 /CLONE=UI-R-BJ1-auk-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.49167.1 /TIER=ConsEnd /STK=2 /UG=Rn.49167 /UG_TITLE=ESTs BE100570 similar to RIKEN cDNA 6330416G13 gene RGD1304595 298104 NM_001106661 1379988_a_at AI236937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236937 /DB_XREF=gi:3830443 /DB_XREF=EST233499 /CLONE=ROVDM58 /FEA=EST /CNT=3 /TID=Rn.64762.1 /TIER=ConsEnd /STK=2 /UG=Rn.64762 /UG_TITLE=ESTs AI236937 similar to Antxr2 protein LOC305633 305633 XM_001069109 /// XM_223745 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1379989_at AI236937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236937 /DB_XREF=gi:3830443 /DB_XREF=EST233499 /CLONE=ROVDM58 /FEA=EST /CNT=3 /TID=Rn.64762.1 /TIER=ConsEnd /STK=2 /UG=Rn.64762 /UG_TITLE=ESTs AI236937 similar to Antxr2 protein LOC305633 305633 XM_001069109 /// XM_223745 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1379990_at BG380925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380925 /DB_XREF=gi:13305439 /DB_XREF=UI-R-CT0-bul-e-12-0-UI.s1 /CLONE=UI-R-CT0-bul-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.66786.1 /TIER=ConsEnd /STK=2 /UG=Rn.66786 /UG_TITLE=ESTs BG380925 1379991_at AI176896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176896 /DB_XREF=gi:3727534 /DB_XREF=EST220502 /CLONE=ROVBY30 /FEA=EST /CNT=3 /TID=Rn.29047.1 /TIER=ConsEnd /STK=2 /UG=Rn.29047 /UG_TITLE=ESTs AI176896 1379992_at BM389800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389800 /DB_XREF=gi:18189853 /DB_XREF=UI-R-CN1-cjp-f-19-0-UI.s1 /CLONE=UI-R-CN1-cjp-f-19-0-UI /FEA=EST /CNT=3 /TID=Rn.27295.1 /TIER=ConsEnd /STK=2 /UG=Rn.27295 /UG_TITLE=ESTs, Weakly similar to T25122 hypothetical protein T22G5.1 - Caenorhabditis elegans (C.elegans) BM389800 glycerophosphodiester phosphodiesterase domain containing 3 Gdpd3 293490 XM_002725663 /// XM_002728806 0006071 // glycerol metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0008889 // glycerophosphodiester phosphodiesterase activity // inferred from electronic annotation 1379993_at AW529628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529628 /DB_XREF=gi:7172042 /DB_XREF=UI-R-BT1-akn-d-11-0-UI.s1 /CLONE=UI-R-BT1-akn-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.43319.1 /TIER=ConsEnd /STK=2 /UG=Rn.43319 /UG_TITLE=ESTs, Weakly similar to OAZ RAT ORNITHINE DECARBOXYLASE ANTIZYME (R.norvegicus) AW529628 ornithine decarboxylase antizyme 3 Oaz3 689588 NM_001101018 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008073 // ornithine decarboxylase inhibitor activity // inferred from electronic annotation 1379994_at AI070694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070694 /DB_XREF=gi:3396945 /DB_XREF=UI-R-C2-mx-e-12-0-UI.s1 /CLONE=UI-R-C2-mx-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.67047.1 /TIER=ConsEnd /STK=2 /UG=Rn.67047 /UG_TITLE=ESTs AI070694 1379995_at BE113173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113173 /DB_XREF=gi:8505278 /DB_XREF=UI-R-BJ1-awc-d-03-0-UI.s1 /CLONE=UI-R-BJ1-awc-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.38122.1 /TIER=ConsEnd /STK=2 /UG=Rn.38122 /UG_TITLE=ESTs BE113173 1379996_at AI411753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411753 /DB_XREF=gi:4255257 /DB_XREF=EST240047 /CLONE=RPLDJ16 /FEA=EST /CNT=3 /TID=Rn.4087.1 /TIER=ConsEnd /STK=2 /UG=Rn.4087 /UG_TITLE=ESTs AI411753 1379997_at BF398462 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398462 /DB_XREF=gi:11383453 /DB_XREF=UI-R-BS2-bep-b-03-0-UI.s1 /CLONE=UI-R-BS2-bep-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.26917.1 /TIER=ConsEnd /STK=2 /UG=Rn.26917 /UG_TITLE=ESTs BF398462 1379998_at AA944411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944411 /DB_XREF=gi:3104327 /DB_XREF=EST199910 /CLONE=REMAG77 /FEA=EST /CNT=3 /TID=Rn.22994.1 /TIER=ConsEnd /STK=2 /UG=Rn.22994 /UG_TITLE=ESTs AA944411 1379999_at AW530087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530087 /DB_XREF=gi:7172501 /DB_XREF=UI-R-C4-ald-d-09-0-UI.s1 /CLONE=UI-R-C4-ald-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.47374.1 /TIER=ConsEnd /STK=2 /UG=Rn.47374 /UG_TITLE=ESTs AW530087 1380000_at AI071500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071500 /DB_XREF=gi:3397715 /DB_XREF=UI-R-C2-nc-e-04-0-UI.s1 /CLONE=UI-R-C2-nc-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.20551.1 /TIER=ConsEnd /STK=2 /UG=Rn.20551 /UG_TITLE=ESTs AI071500 1380001_at AW526140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526140 /DB_XREF=gi:7168525 /DB_XREF=UI-R-BO1-aiz-f-06-0-UI.s1 /CLONE=UI-R-BO1-aiz-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.48602.1 /TIER=ConsEnd /STK=2 /UG=Rn.48602 /UG_TITLE=ESTs, Highly similar to Pinin (M.musculus) AW526140 pinin, desmosome associated protein Pnn 368070 NM_001109023 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0016607 // nuclear speck // not recorded 0005515 // protein binding // not recorded 1380002_at H31747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31747 /DB_XREF=gi:977164 /DB_XREF=EST106104 /CLONE=RPCAX33 /FEA=EST /CNT=3 /TID=Rn.56150.1 /TIER=ConsEnd /STK=2 /UG=Rn.56150 /UG_TITLE=ESTs H31747 spire homolog 1 (Drosophila) Spire1 307348 NM_001107381 0048193 // Golgi vesicle transport // not recorded 0005794 // Golgi apparatus // not recorded 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1380003_at BI281665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281665 /DB_XREF=gi:14931630 /DB_XREF=UI-R-CT0s-cav-a-08-0-UI.s1 /CLONE=UI-R-CT0s-cav-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.18499.1 /TIER=ConsEnd /STK=2 /UG=Rn.18499 /UG_TITLE=ESTs BI281665 1380004_at BG373440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373440 /DB_XREF=gi:13270017 /DB_XREF=UI-R-CS0-bsd-c-08-0-UI.s1 /CLONE=UI-R-CS0-bsd-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.67012.1 /TIER=ConsEnd /STK=2 /UG=Rn.67012 /UG_TITLE=ESTs BG373440 1380005_at AI045312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045312 /DB_XREF=gi:3292131 /DB_XREF=UI-R-C1-kh-b-01-0-UI.s1 /CLONE=UI-R-C1-kh-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.52087.1 /TIER=ConsEnd /STK=2 /UG=Rn.52087 /UG_TITLE=ESTs AI045312 1380006_at AW921301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921301 /DB_XREF=gi:8087125 /DB_XREF=EST352605 /CLONE=RGIHQ74 /FEA=EST /CNT=3 /TID=Rn.18040.1 /TIER=ConsEnd /STK=2 /UG=Rn.18040 /UG_TITLE=ESTs AW921301 1380007_at BE109875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109875 /DB_XREF=gi:8501980 /DB_XREF=UI-R-CA0-axi-d-05-0-UI.s1 /CLONE=UI-R-CA0-axi-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.49005.1 /TIER=ConsEnd /STK=2 /UG=Rn.49005 /UG_TITLE=ESTs BE109875 1380008_at BI291914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291914 /DB_XREF=gi:14951901 /DB_XREF=UI-R-DN0-ciu-k-19-0-UI.s1 /CLONE=UI-R-DN0-ciu-k-19-0-UI /FEA=EST /CNT=3 /TID=Rn.68180.1 /TIER=ConsEnd /STK=2 /UG=Rn.68180 /UG_TITLE=ESTs BI291914 zinc finger protein 828 Zfp828 306647 NM_001107329 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1380009_at BM392230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392230 /DB_XREF=gi:18192283 /DB_XREF=UI-R-DO1-ckp-f-07-0-UI.s1 /CLONE=UI-R-DO1-ckp-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.15320.1 /TIER=ConsEnd /STK=2 /UG=Rn.15320 /UG_TITLE=ESTs BM392230 vaccinia related kinase 1 Vrk1 362779 NM_001012194 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0046777 // protein autophosphorylation // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1380010_at BE097232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097232 /DB_XREF=gi:8488163 /DB_XREF=UI-R-BO1-apu-h-02-0-UI.s1 /CLONE=UI-R-BO1-apu-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.49568.1 /TIER=ConsEnd /STK=2 /UG=Rn.49568 /UG_TITLE=ESTs BE097232 1380011_at BM383573 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383573 /DB_XREF=gi:18183626 /DB_XREF=UI-R-DM1-cka-j-05-0-UI.s1 /CLONE=UI-R-DM1-cka-j-05-0-UI /FEA=EST /CNT=3 /TID=Rn.47050.1 /TIER=ConsEnd /STK=2 /UG=Rn.47050 /UG_TITLE=ESTs, Weakly similar to NED4 MOUSE NEDD-4 PROTEIN (M.musculus) BM383573 1380012_at BF399592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399592 /DB_XREF=gi:11384600 /DB_XREF=UI-R-CA0-bht-g-09-0-UI.s2 /CLONE=UI-R-CA0-bht-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.60026.1 /TIER=ConsEnd /STK=2 /UG=Rn.60026 /UG_TITLE=ESTs BF399592 DEAD (Asp-Glu-Ala-As) box polypeptide 19B Ddx19b 690693 NM_001005895 /// XM_001075251 /// XM_002725392 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1380013_at BI273908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI273908 /DB_XREF=gi:14884329 /DB_XREF=UI-R-CW0-bwa-d-04-0-UI.s1 /CLONE=UI-R-CW0-bwa-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.21013.1 /TIER=ConsEnd /STK=2 /UG=Rn.21013 /UG_TITLE=ESTs BI273908 patatin-like phospholipase domain containing 3 Pnpla3 362972 XR_085887 /// XR_086307 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0019432 // triglyceride biosynthetic process // not recorded /// 0019433 // triglyceride catabolic process // not recorded 0016020 // membrane // not recorded 0004623 // phospholipase A2 activity // not recorded /// 0004806 // triglyceride lipase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0051264 // mono-olein transacylation activity // not recorded /// 0051265 // diolein transacylation activity // not recorded 1380014_at AW524490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524490 /DB_XREF=gi:7166875 /DB_XREF=UI-R-BO0-ahz-a-10-0-UI.s1 /CLONE=UI-R-BO0-ahz-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.45860.1 /TIER=ConsEnd /STK=2 /UG=Rn.45860 /UG_TITLE=ESTs AW524490 1380015_at BF404338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404338 /DB_XREF=gi:11392313 /DB_XREF=UI-R-CA1-bjd-o-15-0-UI.s1 /CLONE=UI-R-CA1-bjd-o-15-0-UI /FEA=EST /CNT=3 /TID=Rn.59541.1 /TIER=ConsEnd /STK=2 /UG=Rn.59541 /UG_TITLE=ESTs BF404338 1380016_at BF389694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389694 /DB_XREF=gi:11374529 /DB_XREF=UI-R-BS2-bdn-f-10-0-UI.s1 /CLONE=UI-R-BS2-bdn-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.64856.1 /TIER=ConsEnd /STK=2 /UG=Rn.64856 /UG_TITLE=ESTs BF389694 1380017_at BE103930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103930 /DB_XREF=gi:8496030 /DB_XREF=UI-R-BX0-arj-e-11-0-UI.s1 /CLONE=UI-R-BX0-arj-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.34663.1 /TIER=ConsEnd /STK=2 /UG=Rn.34663 /UG_TITLE=ESTs BE103930 1380018_at BF397708 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397708 /DB_XREF=gi:11382692 /DB_XREF=UI-R-BS2-bed-f-12-0-UI.s1 /CLONE=UI-R-BS2-bed-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.40867.1 /TIER=ConsEnd /STK=2 /UG=Rn.40867 /UG_TITLE=ESTs BF397708 1380019_at BM392376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392376 /DB_XREF=gi:18192429 /DB_XREF=UI-R-EB1-clf-a-06-0-UI.s1 /CLONE=UI-R-EB1-clf-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.48998.1 /TIER=ConsEnd /STK=2 /UG=Rn.48998 /UG_TITLE=ESTs, Weakly similar to CLATHRIN-COATED VESICLESYNAPTIC VESICLE PROTON PUMP 116 KD SUBUNIT (R.norvegicus) BM392376 T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 Tcirg1 293650 NM_199089 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // non-traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from sequence or structural similarity /// 0033177 // proton-transporting two-sector ATPase complex, proton-transporting domain // inferred from electronic annotation 0015078 // hydrogen ion transmembrane transporter activity // non-traceable author statement /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation 1380020_at BF395860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395860 /DB_XREF=gi:11380831 /DB_XREF=UI-R-BS2-bds-b-06-0-UI.s1 /CLONE=UI-R-BS2-bds-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.64226.1 /TIER=ConsEnd /STK=2 /UG=Rn.64226 /UG_TITLE=ESTs BF395860 1380021_at AI059486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059486 /DB_XREF=gi:3333263 /DB_XREF=UI-R-C1-lg-f-03-0-UI.s1 /CLONE=UI-R-C1-lg-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.19187.1 /TIER=ConsEnd /STK=2 /UG=Rn.19187 /UG_TITLE=ESTs AI059486 DENN/MADD domain containing 2D Dennd2d 310772 NM_001107714 1380022_at BE119114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119114 /DB_XREF=gi:8511219 /DB_XREF=UI-R-CA0-azy-f-07-0-UI.s1 /CLONE=UI-R-CA0-azy-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.53136.1 /TIER=ConsEnd /STK=2 /UG=Rn.53136 /UG_TITLE=ESTs BE119114 RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae) Rrn3 304714 NM_001135846 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006361 // transcription initiation from RNA polymerase I promoter // inferred from electronic annotation /// 0006361 // transcription initiation from RNA polymerase I promoter // not recorded /// 0007000 // nucleolus organization // inferred from electronic annotation /// 0007000 // nucleolus organization // not recorded /// 0007028 // cytoplasm organization // inferred from electronic annotation /// 0007028 // cytoplasm organization // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0042254 // ribosome biogenesis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0048872 // homeostasis of number of cells // inferred from electronic annotation /// 0048872 // homeostasis of number of cells // not recorded 0005654 // nucleoplasm // not recorded 1380023_at AA997863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997863 /DB_XREF=gi:4285863 /DB_XREF=UI-R-C0-hu-d-09-0-UI.s1 /CLONE=UI-R-C0-hu-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.33111.1 /TIER=ConsEnd /STK=2 /UG=Rn.33111 /UG_TITLE=ESTs AA997863 1380024_at BI282175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282175 /DB_XREF=gi:14932669 /DB_XREF=UI-R-CU0s-cbx-e-02-0-UI.s1 /CLONE=UI-R-CU0s-cbx-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.73124.1 /TIER=ConsEnd /STK=2 /UG=Rn.73124 /UG_TITLE=ESTs BI282175 1380025_at AW530337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530337 /DB_XREF=gi:7172751 /DB_XREF=UI-R-BU0-amv-d-09-0-UI.s1 /CLONE=UI-R-BU0-amv-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.47428.1 /TIER=ConsEnd /STK=2 /UG=Rn.47428 /UG_TITLE=ESTs AW530337 DiGeorge syndrome critical region gene 8 Dgcr8 287954 NM_001105865 0031053 // primary microRNA processing // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1380026_at BF405898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405898 /DB_XREF=gi:11393873 /DB_XREF=UI-R-CA1-bii-d-01-0-UI.s1 /CLONE=UI-R-CA1-bii-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.60611.1 /TIER=ConsEnd /STK=2 /UG=Rn.60611 /UG_TITLE=ESTs, Weakly similar to probable DNARNA-binding protein (R.norvegicus) BF405898 1380027_at AW523502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523502 /DB_XREF=gi:7165887 /DB_XREF=UI-R-BO0-aho-h-05-0-UI.s1 /CLONE=UI-R-BO0-aho-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.32926.1 /TIER=ConsEnd /STK=2 /UG=Rn.32926 /UG_TITLE=ESTs AW523502 CREB binding protein Crebbp 54244 NM_133381 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from direct assay /// 0016573 // histone acetylation // inferred from direct assay /// 0016573 // histone acetylation // not recorded /// 0016573 // histone acetylation // inferred from electronic annotation /// 0016573 // histone acetylation // inferred from sequence or structural similarity /// 0018076 // N-terminal peptidyl-lysine acetylation // not recorded /// 0018076 // N-terminal peptidyl-lysine acetylation // inferred from electronic annotation /// 0030718 // germ-line stem cell maintenance // not recorded /// 0030718 // germ-line stem cell maintenance // inferred from electronic annotation /// 0033261 // regulation of S phase // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from direct assay /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0000123 // histone acetyltransferase complex // not recorded /// 0000123 // histone acetyltransferase complex // inferred from electronic annotation /// 0000940 // condensed chromosome outer kinetochore // not recorded /// 0000940 // condensed chromosome outer kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred by curator /// 0005667 // transcription factor complex // inferred from direct assay /// 0005667 // transcription factor complex // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0016604 // nuclear body // not recorded /// 0016604 // nuclear body // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0002039 // p53 binding // not recorded /// 0002039 // p53 binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003712 // transcription cofactor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0003713 // transcription coactivator activity // traceable author statement /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from direct assay /// 0004402 // histone acetyltransferase activity // not recorded /// 0004402 // histone acetyltransferase activity // traceable author statement /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016407 // acetyltransferase activity // not recorded /// 0016407 // acetyltransferase activity // inferred from electronic annotation /// 0016407 // acetyltransferase activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0042975 // peroxisome proliferator activated receptor binding // inferred from direct assay /// 0046332 // SMAD binding // inferred from physical interaction /// 0051577 // MyoD binding // not recorded /// 0051577 // MyoD binding // inferred from electronic annotation /// 0051577 // MyoD binding // inferred from sequence or structural similarity 1380028_at BM384251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384251 /DB_XREF=gi:18184304 /DB_XREF=UI-R-DZ0-cks-g-13-0-UI.s1 /CLONE=UI-R-DZ0-cks-g-13-0-UI /FEA=EST /CNT=3 /TID=Rn.26576.1 /TIER=ConsEnd /STK=2 /UG=Rn.26576 /UG_TITLE=ESTs BM384251 ADP-ribosylation factor-like 4C Arl4c 367311 XR_085918 /// XR_086347 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1380029_at BI278874 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278874 /DB_XREF=gi:14926143 /DB_XREF=UI-R-CX0-bwx-h-11-0-UI.s1 /CLONE=UI-R-CX0-bwx-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.72977.1 /TIER=ConsEnd /STK=2 /UG=Rn.72977 /UG_TITLE=ESTs, Moderately similar to Y431_HUMAN Hypothetical protein KIAA0431 (H.sapiens) BI278874 ATM interactor Atmin 315037 NM_001191786 /// XM_001078346 /// XM_235378 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1380030_at AW523520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523520 /DB_XREF=gi:7165905 /DB_XREF=UI-R-BO0-ahu-a-11-0-UI.s1 /CLONE=UI-R-BO0-ahu-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.45666.2 /TIER=ConsEnd /STK=2 /UG=Rn.45666 /UG_TITLE=ESTs, Weakly similar to S64906 hypothetical protein YLR074c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AW523520 zinc finger protein 593 Znf593 298546 NM_001106689 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380031_at BE098261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098261 /DB_XREF=gi:8490124 /DB_XREF=UI-R-BJ1-asz-f-07-0-UI.s1 /CLONE=UI-R-BJ1-asz-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.49191.1 /TIER=ConsEnd /STK=2 /UG=Rn.49191 /UG_TITLE=ESTs BE098261 1380032_at BF407634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407634 /DB_XREF=gi:11395609 /DB_XREF=UI-R-BJ2-bqu-e-12-0-UI.s1 /CLONE=UI-R-BJ2-bqu-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.21552.1 /TIER=ConsEnd /STK=2 /UG=Rn.21552 /UG_TITLE=ESTs BF407634 SLAIN motif family, member 2 Slain2 305310 NM_001107214 1380033_at AI408858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408858 /DB_XREF=gi:4252362 /DB_XREF=EST237149 /CLONE=RKIDP48 /FEA=EST /CNT=3 /TID=Rn.44209.1 /TIER=ConsEnd /STK=2 /UG=Rn.44209 /UG_TITLE=ESTs AI408858 1380034_at BF289057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289057 /DB_XREF=gi:11220127 /DB_XREF=EST453648 /CLONE=RGIHA70 /FEA=EST /CNT=3 /TID=Rn.55695.1 /TIER=ConsEnd /STK=2 /UG=Rn.55695 /UG_TITLE=ESTs BF289057 1380035_at BF523119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523119 /DB_XREF=gi:11631086 /DB_XREF=UI-R-C3-si-g-09-0-UI.r1 /CLONE=UI-R-C3-si-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.9502.1 /TIER=ConsEnd /STK=2 /UG=Rn.9502 /UG_TITLE=ESTs BF523119 similar to RIKEN cDNA 5830433M19 MGC125002 500501 NM_001034154 1380036_at BE101298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101298 /DB_XREF=gi:8493210 /DB_XREF=UI-R-BJ1-aui-d-08-0-UI.s1 /CLONE=UI-R-BJ1-aui-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.21213.1 /TIER=ConsEnd /STK=2 /UG=Rn.21213 /UG_TITLE=ESTs BE101298 1380037_at BI294354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294354 /DB_XREF=gi:14956735 /DB_XREF=UI-R-DK0-ceh-g-07-0-UI.s1 /CLONE=UI-R-DK0-ceh-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.42846.1 /TIER=ConsEnd /STK=2 /UG=Rn.42846 /UG_TITLE=ESTs BI294354 1380038_at BF393567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393567 /DB_XREF=gi:11378429 /DB_XREF=UI-R-CA0-bgd-d-07-0-UI.s1 /CLONE=UI-R-CA0-bgd-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.21609.2 /TIER=ConsEnd /STK=2 /UG=Rn.21609 /UG_TITLE=ESTs BF393567 vacuolar protein sorting 13 homolog C (S. cerevisiae) Vps13c 363087 XR_007475 /// XR_086325 0008104 // protein localization // inferred from electronic annotation 1380039_at AI602155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602155 /DB_XREF=gi:4611316 /DB_XREF=UI-R-Y0-vb-h-07-0-UI.s2 /CLONE=UI-R-Y0-vb-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.66574.1 /TIER=ConsEnd /STK=2 /UG=Rn.66574 /UG_TITLE=ESTs AI602155 similar to CG16812-PA RGD1307554 292739 NM_001109664 1380040_at BE120695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120695 /DB_XREF=gi:8512800 /DB_XREF=UI-R-CA0-bay-e-02-0-UI.s1 /CLONE=UI-R-CA0-bay-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.33202.1 /TIER=ConsEnd /STK=2 /UG=Rn.33202 /UG_TITLE=ESTs BE120695 hypothetical protein LOC689933 LOC689933 689933 NM_001135253 1380041_at BF396849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396849 /DB_XREF=gi:11381830 /DB_XREF=UI-R-BS2-bev-h-05-0-UI.s1 /CLONE=UI-R-BS2-bev-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.26624.1 /TIER=ConsEnd /STK=2 /UG=Rn.26624 /UG_TITLE=ESTs BF396849 1380042_at AA964012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964012 /DB_XREF=gi:4278888 /DB_XREF=UI-R-C0-gu-b-06-0-UI.s1 /CLONE=UI-R-C0-gu-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.38092.1 /TIER=ConsEnd /STK=2 /UG=Rn.38092 /UG_TITLE=ESTs AA964012 1380043_at AA944436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944436 /DB_XREF=gi:3104352 /DB_XREF=EST199935 /CLONE=REMAJ16 /FEA=EST /CNT=3 /TID=Rn.41772.1 /TIER=ConsEnd /STK=2 /UG=Rn.41772 /UG_TITLE=ESTs AA944436 Hypothetical protein LOC688890 LOC688890 688890 XM_001068712 1380044_x_at BM388738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388738 /DB_XREF=gi:18188791 /DB_XREF=UI-R-DZ0-ckm-p-02-0-UI.s1 /CLONE=UI-R-DZ0-ckm-p-02-0-UI /FEA=EST /CNT=3 /TID=Rn.43454.1 /TIER=ConsEnd /STK=2 /UG=Rn.43454 /UG_TITLE=ESTs BM388738 1380045_at AI411446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411446 /DB_XREF=gi:4254950 /DB_XREF=EST239740 /CLONE=RKIEV69 /FEA=EST /CNT=3 /TID=Rn.43636.1 /TIER=ConsEnd /STK=2 /UG=Rn.43636 /UG_TITLE=ESTs AI411446 pyruvate dehyrogenase phosphatase catalytic subunit 2 Pdp2 246311 NM_145091 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0009758 // carbohydrate utilization // traceable author statement /// 0010510 // regulation of acetyl-CoA biosynthetic process from pyruvate // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from expression pattern /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation /// 0019910 // mitochondrial pyruvate dehydrogenase (lipoamide) phosphatase complex // traceable author statement 0000287 // magnesium ion binding // inferred by curator /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0004724 // magnesium-dependent protein serine/threonine phosphatase activity // inferred from direct assay /// 0004741 // [pyruvate dehydrogenase (lipoamide)] phosphatase activity // inferred from direct assay /// 0004741 // [pyruvate dehydrogenase (lipoamide)] phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380046_at AW524705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524705 /DB_XREF=gi:7167090 /DB_XREF=UI-R-BO0-aib-d-09-0-UI.s1 /CLONE=UI-R-BO0-aib-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.26743.1 /TIER=ConsEnd /STK=2 /UG=Rn.26743 /UG_TITLE=ESTs AW524705 Hect domain and RLD 3 Herc3 362377 NM_001108631 0006464 // protein modification process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1380047_at AI500979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI500979 /DB_XREF=gi:4398830 /DB_XREF=UI-R-C2p-rv-e-10-0-UI.s1 /CLONE=UI-R-C2p-rv-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.35231.1 /TIER=ConsEnd /STK=2 /UG=Rn.35231 /UG_TITLE=ESTs AI500979 1380048_at BF401725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401725 /DB_XREF=gi:11389700 /DB_XREF=UI-R-CA0-bgn-h-07-0-UI.s1 /CLONE=UI-R-CA0-bgn-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.48624.1 /TIER=ConsEnd /STK=2 /UG=Rn.48624 /UG_TITLE=ESTs BF401725 Neuroligin 3 Nlgn3 171297 NM_134336 0002087 // regulation of respiratory gaseous exchange by neurological system process // inferred from electronic annotation /// 0002087 // regulation of respiratory gaseous exchange by neurological system process // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0008542 // visual learning // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0035176 // social behavior // inferred from electronic annotation /// 0035176 // social behavior // not recorded /// 0050804 // regulation of synaptic transmission // inferred from electronic annotation /// 0050804 // regulation of synaptic transmission // not recorded /// 0050808 // synapse organization // inferred from direct assay /// 0050808 // synapse organization // not recorded /// 0050808 // synapse organization // inferred from electronic annotation /// 0060080 // regulation of inhibitory postsynaptic membrane potential // inferred from electronic annotation /// 0060080 // regulation of inhibitory postsynaptic membrane potential // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1380049_at AI599448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599448 /DB_XREF=gi:4608496 /DB_XREF=EST251151 /CLONE=REMDW29 /FEA=EST /CNT=3 /TID=Rn.32931.1 /TIER=ConsEnd /STK=2 /UG=Rn.32931 /UG_TITLE=ESTs AI599448 1380050_at AA819428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819428 /DB_XREF=gi:4228566 /DB_XREF=UI-R-A0-bl-h-03-0-UI.s1 /CLONE=UI-R-A0-bl-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.16762.1 /TIER=ConsEnd /STK=2 /UG=Rn.16762 /UG_TITLE=ESTs AA819428 1380051_at BE106288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106288 /DB_XREF=gi:8498390 /DB_XREF=UI-R-BO1-asm-c-01-0-UI.s1 /CLONE=UI-R-BO1-asm-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.6560.1 /TIER=ConsEnd /STK=2 /UG=Rn.6560 /UG_TITLE=ESTs BE106288 1380052_at BE097302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097302 /DB_XREF=gi:8488233 /DB_XREF=UI-R-BO1-apv-g-05-0-UI.s1 /CLONE=UI-R-BO1-apv-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.49171.1 /TIER=ConsEnd /STK=2 /UG=Rn.49171 /UG_TITLE=ESTs BE097302 1380053_at BF397371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397371 /DB_XREF=gi:11382354 /DB_XREF=UI-R-BS2-bex-e-12-0-UI.s1 /CLONE=UI-R-BS2-bex-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.63785.1 /TIER=ConsEnd /STK=2 /UG=Rn.63785 /UG_TITLE=ESTs BF397371 transmembrane 9 superfamily member 3 Tm9sf3 309475 XM_002725800 /// XM_220013 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // not recorded 1380054_at BF405705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405705 /DB_XREF=gi:11393680 /DB_XREF=UI-R-CA1-biv-h-10-0-UI.s1 /CLONE=UI-R-CA1-biv-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.60580.1 /TIER=ConsEnd /STK=2 /UG=Rn.60580 /UG_TITLE=ESTs, Weakly similar to T00359 hypothetical protein KIAA0680 (H.sapiens) BF405705 phosphatase and actin regulator 3 Phactr3 362284 NM_214459 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from electronic annotation 0003779 // actin binding // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotation /// 0004864 // phosphoprotein phosphatase inhibitor activity // traceable author statement /// 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from electronic annotation 1380055_at BI296368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296368 /DB_XREF=gi:14960725 /DB_XREF=UI-R-DK0-cez-e-09-0-UI.s1 /CLONE=UI-R-DK0-cez-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.16799.1 /TIER=ConsEnd /STK=2 /UG=Rn.16799 /UG_TITLE=ESTs BI296368 interleukin 34 Il34 498951 NM_001025766 0001934 // positive regulation of protein phosphorylation // not recorded /// 0001934 // positive regulation of protein phosphorylation // inferred from sequence or structural similarity /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005157 // macrophage colony-stimulating factor receptor binding // not recorded /// 0005157 // macrophage colony-stimulating factor receptor binding // inferred from sequence or structural similarity /// 0005157 // macrophage colony-stimulating factor receptor binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation 1380056_at BF407351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407351 /DB_XREF=gi:11395326 /DB_XREF=UI-R-BJ2-bqe-h-11-0-UI.s1 /CLONE=UI-R-BJ2-bqe-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.63876.1 /TIER=ConsEnd /STK=2 /UG=Rn.63876 /UG_TITLE=ESTs BF407351 1380057_at BE097091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097091 /DB_XREF=gi:8488022 /DB_XREF=UI-R-BO1-apt-a-11-0-UI.s1 /CLONE=UI-R-BO1-apt-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.45104.1 /TIER=ConsEnd /STK=2 /UG=Rn.45104 /UG_TITLE=ESTs BE097091 1380058_at BE113130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113130 /DB_XREF=gi:8505235 /DB_XREF=UI-R-BJ1-awb-h-05-0-UI.s1 /CLONE=UI-R-BJ1-awb-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.49119.1 /TIER=ConsEnd /STK=2 /UG=Rn.49119 /UG_TITLE=ESTs, Moderately similar to T00350 hypothetical protein KIAA0708 (H.sapiens) BE113130 cullin 9 Cul9 316228 NM_001191582 /// XM_001063728 /// XM_002727164 /// XM_002729997 /// XM_236927 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0030071 // regulation of mitotic metaphase/anaphase transition // inferred from electronic annotation 0005680 // anaphase-promoting complex // inferred from electronic annotation /// 0031461 // cullin-RING ubiquitin ligase complex // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380059_at AI013206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013206 /DB_XREF=gi:3227262 /DB_XREF=EST207881 /CLONE=RSPBI09 /FEA=EST /CNT=3 /TID=Rn.17975.1 /TIER=ConsEnd /STK=2 /UG=Rn.17975 /UG_TITLE=ESTs AI013206 1380060_at AI175848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175848 /DB_XREF=gi:4134829 /DB_XREF=EST219419 /CLONE=ROVBG25 /FEA=EST /CNT=3 /TID=Rn.31307.1 /TIER=ConsEnd /STK=2 /UG=Rn.31307 /UG_TITLE=ESTs, Weakly similar to TOP1 MOUSE DNA TOPOISOMERASE I (M.musculus) AI175848 topoisomerase (DNA) I, mitochondrial Top1mt 300029 NM_001002798 0006265 // DNA topological change // inferred from electronic annotation /// 0006268 // DNA unwinding involved in replication // inferred from electronic annotation 0005694 // chromosome // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003916 // DNA topoisomerase activity // inferred from electronic annotation /// 0003917 // DNA topoisomerase type I activity // inferred from electronic annotation /// 0003918 // DNA topoisomerase (ATP-hydrolyzing) activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1380061_at BF418702 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418702 /DB_XREF=gi:11406691 /DB_XREF=UI-R-BJ2-bql-a-05-0-UI.s1 /CLONE=UI-R-BJ2-bql-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.64450.1 /TIER=ConsEnd /STK=2 /UG=Rn.64450 /UG_TITLE=ESTs BF418702 Protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform Ppp2ca 24672 NM_017039 0006470 // protein dephosphorylation // inferred from direct assay /// 0007126 // meiosis // inferred from electronic annotation /// 0007498 // mesoderm development // inferred from electronic annotation /// 0007498 // mesoderm development // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0042221 // response to chemical stimulus // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0046580 // negative regulation of Ras protein signal transduction // inferred from direct assay /// 0046677 // response to antibiotic // inferred from electronic annotation 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation /// 0000159 // protein phosphatase type 2A complex // not recorded /// 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000775 // chromosome, centromeric region // not recorded /// 0000922 // spindle pole // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from direct assay /// 0004722 // protein serine/threonine phosphatase activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from sequence or structural similarity 1380062_at BE097259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097259 /DB_XREF=gi:8488190 /DB_XREF=UI-R-BO1-apv-b-11-0-UI.s1 /CLONE=UI-R-BO1-apv-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.49269.1 /TIER=ConsEnd /STK=2 /UG=Rn.49269 /UG_TITLE=ESTs, Weakly similar to calciumcalmodulin-dependent serine protein kinase (Rattus norvegicus) (R.norvegicus) BE097259 membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) Mpp6 362359 NM_001134982 0005886 // plasma membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030165 // PDZ domain binding // inferred from physical interaction 1380063_at AI169398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169398 /DB_XREF=gi:3705706 /DB_XREF=EST215244 /CLONE=RKIBR78 /FEA=EST /CNT=3 /TID=Rn.28018.1 /TIER=ConsEnd /STK=2 /UG=Rn.28018 /UG_TITLE=ESTs AI169398 cholesterol 25-hydroxylase Ch25h 309527 NM_001025415 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001567 // cholesterol 25-hydroxylase activity // inferred from electronic annotation /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008395 // steroid hydroxylase activity // not recorded /// 0008395 // steroid hydroxylase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380064_at BE113961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113961 /DB_XREF=gi:8506066 /DB_XREF=UI-R-BJ1-awi-d-11-0-UI.s1 /CLONE=UI-R-BJ1-awi-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.21387.1 /TIER=ConsEnd /STK=2 /UG=Rn.21387 /UG_TITLE=ESTs BE113961 1380065_at AI180101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180101 /DB_XREF=gi:3730739 /DB_XREF=EST223838 /CLONE=RSPCQ14 /FEA=EST /CNT=3 /TID=Rn.29373.1 /TIER=ConsEnd /STK=2 /UG=Rn.29373 /UG_TITLE=ESTs AI180101 RGD1565926 RGD1565926 361629 XM_346994 1380066_at BF401956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401956 /DB_XREF=gi:11389931 /DB_XREF=UI-R-CA1-bil-f-03-0-UI.s1 /CLONE=UI-R-CA1-bil-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.59926.1 /TIER=ConsEnd /STK=2 /UG=Rn.59926 /UG_TITLE=ESTs BF401956 transferrin receptor 2 Tfr2 288562 NM_001105916 0006508 // proteolysis // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation 1380067_at BI296036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296036 /DB_XREF=gi:14960076 /DB_XREF=UI-R-DK0-cfd-f-04-0-UI.s1 /CLONE=UI-R-DK0-cfd-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.72961.1 /TIER=ConsEnd /STK=2 /UG=Rn.72961 /UG_TITLE=ESTs BI296036 0016459 // myosin complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1380068_at AA964641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964641 /DB_XREF=gi:4279515 /DB_XREF=UI-R-C0-ha-b-03-0-UI.s1 /CLONE=UI-R-C0-ha-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.11869.1 /TIER=ConsEnd /STK=2 /UG=Rn.11869 /UG_TITLE=ESTs AA964641 1380069_at BF389717 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389717 /DB_XREF=gi:11374552 /DB_XREF=UI-R-BS2-bdo-a-02-0-UI.s1 /CLONE=UI-R-BS2-bdo-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.32423.1 /TIER=ConsEnd /STK=2 /UG=Rn.32423 /UG_TITLE=ESTs BF389717 Cas-Br-M (murine) ecotropic retroviral transforming sequence Cbl 500985 XM_001066453 /// XM_002727049 /// XM_002729914 /// XM_576396 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0016600 // flotillin complex // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded 1380070_at BG377244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377244 /DB_XREF=gi:13301721 /DB_XREF=UI-R-CU0-bux-c-04-0-UI.s1 /CLONE=UI-R-CU0-bux-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.66473.1 /TIER=ConsEnd /STK=2 /UG=Rn.66473 /UG_TITLE=ESTs BG377244 1380071_at BI285978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285978 /DB_XREF=gi:14940168 /DB_XREF=UI-R-CX0s-ccu-a-09-0-UI.s1 /CLONE=UI-R-CX0s-ccu-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.12674.1 /TIER=ConsEnd /STK=2 /UG=Rn.12674 /UG_TITLE=ESTs BI285978 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380072_at AI233871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233871 /DB_XREF=gi:3817751 /DB_XREF=EST230559 /CLONE=RLUCS20 /FEA=EST /CNT=3 /TID=Rn.41394.1 /TIER=ConsEnd /STK=2 /UG=Rn.41394 /UG_TITLE=ESTs AI233871 similar to 2310044H10Rik protein MGC93975 292878 NM_001004221 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1380073_at AI013629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013629 /DB_XREF=gi:4133892 /DB_XREF=EST208304 /CLONE=RSPBP86 /FEA=EST /CNT=3 /TID=Rn.36184.1 /TIER=ConsEnd /STK=2 /UG=Rn.36184 /UG_TITLE=ESTs AI013629 furry homolog (Drosophila) Fry 304244 NM_001170398 1380074_at BG381538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381538 /DB_XREF=gi:13306010 /DB_XREF=UI-R-CT0-buk-e-01-0-UI.s1 /CLONE=UI-R-CT0-buk-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.16060.1 /TIER=ConsEnd /STK=2 /UG=Rn.16060 /UG_TITLE=ESTs BG381538 renalase, FAD-dependent amine oxidase Rnls 361751 NM_001014167 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation 1380075_at BF390843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390843 /DB_XREF=gi:11375690 /DB_XREF=UI-R-CA1-bci-b-03-0-UI.s1 /CLONE=UI-R-CA1-bci-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.57297.1 /TIER=ConsEnd /STK=2 /UG=Rn.57297 /UG_TITLE=ESTs BF390843 1380076_at BF408593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408593 /DB_XREF=gi:11396568 /DB_XREF=UI-R-BJ2-brf-e-12-0-UI.s1 /CLONE=UI-R-BJ2-brf-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.45037.1 /TIER=ConsEnd /STK=2 /UG=Rn.45037 /UG_TITLE=ESTs BF408593 ankyrin repeat and SOCS box-containing 18 Asb18 316614 NM_001108231 0023034 // intracellular signaling pathway // inferred from electronic annotation 1380077_at AI412131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412131 /DB_XREF=gi:4255635 /DB_XREF=EST240425 /CLONE=RKIEG34 /FEA=EST /CNT=3 /TID=Rn.43019.1 /TIER=ConsEnd /STK=2 /UG=Rn.43019 /UG_TITLE=ESTs AI412131 1380078_at AW144384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144384 /DB_XREF=gi:6164283 /DB_XREF=EST294680 /CLONE=RGICR32 /FEA=EST /CNT=3 /TID=Rn.25351.1 /TIER=ConsEnd /STK=2 /UG=Rn.25351 /UG_TITLE=ESTs AW144384 1380079_at AW533923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533923 /DB_XREF=gi:7176384 /DB_XREF=UI-R-C4-alr-c-09-0-UI.s1 /CLONE=UI-R-C4-alr-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.48221.1 /TIER=ConsEnd /STK=2 /UG=Rn.48221 /UG_TITLE=ESTs AW533923 sterile alpha motif domain containing 9-like Samd9l 500015 XM_001069386 /// XM_575369 1380080_at AW535933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535933 /DB_XREF=gi:7178347 /DB_XREF=UI-R-C4-amb-b-01-0-UI.s1 /CLONE=UI-R-C4-amb-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.48580.1 /TIER=ConsEnd /STK=2 /UG=Rn.48580 /UG_TITLE=ESTs AW535933 1380081_at AA819551 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819551 /DB_XREF=gi:4228687 /DB_XREF=UI-R-A0-bf-h-02-0-UI.s1 /CLONE=UI-R-A0-bf-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.34177.1 /TIER=ConsEnd /STK=2 /UG=Rn.34177 /UG_TITLE=ESTs AA819551 1380082_at AA943616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943616 /DB_XREF=gi:3103532 /DB_XREF=EST199115 /CLONE=RBRAM43 /FEA=EST /CNT=3 /TID=Rn.7608.1 /TIER=ConsEnd /STK=2 /UG=Rn.7608 /UG_TITLE=ESTs AA943616 1380083_at BI283346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283346 /DB_XREF=gi:14934998 /DB_XREF=UI-R-DD0-bzz-a-10-0-UI.s1 /CLONE=UI-R-DD0-bzz-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.78372.1 /TIER=ConsEnd /STK=2 /UG=Rn.78372 /UG_TITLE=ESTs BI283346 kallikrein related-peptidase 10 Klk10 292850 NM_001004100 0006508 // proteolysis // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation 1380084_at BF399367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399367 /DB_XREF=gi:11384371 /DB_XREF=UI-R-CA1-bjb-k-08-0-UI.s1 /CLONE=UI-R-CA1-bjb-k-08-0-UI /FEA=EST /CNT=3 /TID=Rn.63990.1 /TIER=ConsEnd /STK=2 /UG=Rn.63990 /UG_TITLE=ESTs BF399367 1380085_at AA945105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945105 /DB_XREF=gi:3105021 /DB_XREF=EST200604 /CLONE=RLIAG56 /FEA=EST /CNT=3 /TID=Rn.7835.1 /TIER=ConsEnd /STK=2 /UG=Rn.7835 /UG_TITLE=ESTs AA945105 1380086_at AI059192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059192 /DB_XREF=gi:3332969 /DB_XREF=UI-R-C1-lb-a-11-0-UI.s1 /CLONE=UI-R-C1-lb-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.19094.1 /TIER=ConsEnd /STK=2 /UG=Rn.19094 /UG_TITLE=ESTs AI059192 1380087_at BE119409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119409 /DB_XREF=gi:8511514 /DB_XREF=UI-R-CA0-bac-c-07-0-UI.s1 /CLONE=UI-R-CA0-bac-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.33796.1 /TIER=ConsEnd /STK=2 /UG=Rn.33796 /UG_TITLE=ESTs BE119409 1380088_at AW533021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533021 /DB_XREF=gi:7175435 /DB_XREF=UI-R-BU0-amy-h-05-0-UI.s1 /CLONE=UI-R-BU0-amy-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.28360.1 /TIER=ConsEnd /STK=2 /UG=Rn.28360 /UG_TITLE=ESTs AW533021 1380089_at AI407434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407434 /DB_XREF=gi:4250938 /DB_XREF=EST235723 /CLONE=ROVDQ25 /FEA=EST /CNT=3 /TID=Rn.18980.1 /TIER=ConsEnd /STK=2 /UG=Rn.18980 /UG_TITLE=ESTs AI407434 1380090_at BF407443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407443 /DB_XREF=gi:11395418 /DB_XREF=UI-R-BJ2-bqs-c-10-0-UI.s1 /CLONE=UI-R-BJ2-bqs-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.63824.1 /TIER=ConsEnd /STK=2 /UG=Rn.63824 /UG_TITLE=ESTs BF407443 1380091_at BF287655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287655 /DB_XREF=gi:11218725 /DB_XREF=EST452246 /CLONE=RGIGI49 /FEA=EST /CNT=3 /TID=Rn.30231.1 /TIER=ConsEnd /STK=2 /UG=Rn.30231 /UG_TITLE=ESTs BF287655 1380092_at AI146096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146096 /DB_XREF=gi:3667895 /DB_XREF=UI-R-E1-fb-d-09-0-UI.s1 /CLONE=UI-R-E1-fb-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.28732.1 /TIER=ConsEnd /STK=2 /UG=Rn.28732 /UG_TITLE=ESTs, Moderately similar to I38863 E1B 19KBcl-2-interacting protein Nip1 (H.sapiens) AI146096 BCL2/adenovirus E1B interacting protein 1 /// BCL2/adenovirus E1B interacting protein 1-like 1 Bnip1 /// Bnip1l1 100363151 /// 140932 NM_080897 /// XM_002729133 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // inferred from expression pattern /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from sequence or structural similarity /// 0007029 // endoplasmic reticulum organization // not recorded /// 0007029 // endoplasmic reticulum organization // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016320 // endoplasmic reticulum membrane fusion // not recorded /// 0016320 // endoplasmic reticulum membrane fusion // inferred from sequence or structural similarity 0000139 // Golgi membrane // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005635 // nuclear envelope // inferred from sequence or structural similarity /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031201 // SNARE complex // not recorded /// 0031201 // SNARE complex // inferred from sequence or structural similarity /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from sequence or structural similarity 0005515 // protein binding // not recorded 1380093_at AA901309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901309 /DB_XREF=gi:4233810 /DB_XREF=UI-R-A1-dp-c-08-0-UI.s1 /CLONE=UI-R-A1-dp-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.40285.1 /TIER=ConsEnd /STK=2 /UG=Rn.40285 /UG_TITLE=ESTs AA901309 similar to Protein UNQ9166/PRO28631 precursor RGD1563996 315163 XM_001077526 /// XM_235511 1380094_a_at AI178375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178375 /DB_XREF=gi:3729013 /DB_XREF=EST222044 /CLONE=RPLCP70 /FEA=EST /CNT=1 /TID=Rn.24179.2 /TIER=ConsEnd /STK=0 /UG=Rn.24179 /UG_TITLE=ESTs AI178375 Zinc finger protein 212 Zfp212 297066 XM_001053455 /// XM_231749 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1380095_at BF410660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410660 /DB_XREF=gi:11398593 /DB_XREF=UI-R-CA0-bma-h-02-0-UI.s1 /CLONE=UI-R-CA0-bma-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.61762.1 /TIER=ConsEnd /STK=2 /UG=Rn.61762 /UG_TITLE=ESTs, Weakly similar to APP2 RAT AMYLOID-LIKE PROTEIN 2 PRECURSOR (R.norvegicus) BF410660 WAP four-disulfide core domain 6A Wfdc6a 685153 XM_001062561 /// XM_002726295 0005576 // extracellular region // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1380096_at AW520939 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520939 /DB_XREF=gi:7163317 /DB_XREF=UI-R-BO0-agq-b-08-0-UI.s1 /CLONE=UI-R-BO0-agq-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.64858.1 /TIER=ConsEnd /STK=2 /UG=Rn.64858 /UG_TITLE=ESTs AW520939 1380097_at BE098726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098726 /DB_XREF=gi:8490594 /DB_XREF=UI-R-BJ1-atd-c-02-0-UI.s1 /CLONE=UI-R-BJ1-atd-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.27248.1 /TIER=ConsEnd /STK=2 /UG=Rn.27248 /UG_TITLE=ESTs BE098726 1380098_at AW535324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535324 /DB_XREF=gi:7177738 /DB_XREF=UI-R-C4-alv-g-10-0-UI.s1 /CLONE=UI-R-C4-alv-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.48476.1 /TIER=ConsEnd /STK=2 /UG=Rn.48476 /UG_TITLE=ESTs AW535324 1380099_at BM391357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391357 /DB_XREF=gi:18191410 /DB_XREF=UI-R-DY0-ckq-f-10-0-UI.s1 /CLONE=UI-R-DY0-ckq-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.72568.1 /TIER=ConsEnd /STK=2 /UG=Rn.72568 /UG_TITLE=ESTs BM391357 1380100_at AW526268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526268 /DB_XREF=gi:7168653 /DB_XREF=UI-R-BO1-aja-b-02-0-UI.s1 /CLONE=UI-R-BO1-aja-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.9409.1 /TIER=ConsEnd /STK=2 /UG=Rn.9409 /UG_TITLE=ESTs AW526268 1380101_at BE109349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109349 /DB_XREF=gi:8501454 /DB_XREF=UI-R-BJ1-auq-h-11-0-UI.s1 /CLONE=UI-R-BJ1-auq-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.48048.1 /TIER=ConsEnd /STK=2 /UG=Rn.48048 /UG_TITLE=ESTs BE109349 poly(A) polymerase gamma Papolg 305586 NM_001107244 0006350 // transcription // inferred from electronic annotation /// 0031123 // RNA 3'-end processing // inferred from electronic annotation /// 0043631 // RNA polyadenylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0004652 // polynucleotide adenylyltransferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1380102_at BM386836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386836 /DB_XREF=gi:18186889 /DB_XREF=UI-R-CN1-cjh-k-20-0-UI.s1 /CLONE=UI-R-CN1-cjh-k-20-0-UI /FEA=EST /CNT=3 /TID=Rn.35453.1 /TIER=ConsEnd /STK=2 /UG=Rn.35453 /UG_TITLE=ESTs, Highly similar to JC5276 HXC-26 protein (H.sapiens) BM386836 family with sequence similarity 50, member A Fam50a 293862 NM_001170573 /// XM_001055598 /// XM_215220 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 1380103_at AI548379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548379 /DB_XREF=gi:4465867 /DB_XREF=UI-R-C3-te-b-01-0-UI.s1 /CLONE=UI-R-C3-te-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.64561.1 /TIER=ConsEnd /STK=2 /UG=Rn.64561 /UG_TITLE=ESTs AI548379 1380104_at AA963815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963815 /DB_XREF=gi:4278757 /DB_XREF=UI-R-C0-gs-b-10-0-UI.s1 /CLONE=UI-R-C0-gs-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.37599.1 /TIER=ConsEnd /STK=2 /UG=Rn.37599 /UG_TITLE=ESTs AA963815 coagulation factor IX F9 24946 NM_031540 /// XM_001054425 /// XM_346365 0006508 // proteolysis // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from direct assay /// 0007596 // blood coagulation // inferred from electronic annotation /// 0007596 // blood coagulation // not recorded /// 0007598 // blood coagulation, extrinsic pathway // not recorded /// 0008152 // metabolic process // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005886 // plasma membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1380105_at C07059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:C07059 /DB_XREF=gi:1503835 /DB_XREF=C07059 /FEA=EST /CNT=3 /TID=Rn.16045.1 /TIER=ConsEnd /STK=2 /UG=Rn.16045 /UG_TITLE=ESTs C07059 similar to Solute carrier family 23, member 2 (Sodium-dependent vitamin C transporter 2) RGD1565367 312226 XM_001067886 /// XM_231601 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1380106_at BF283079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283079 /DB_XREF=gi:11214149 /DB_XREF=EST447670 /CLONE=RGIDX22 /FEA=EST /CNT=3 /TID=Rn.56072.1 /TIER=ConsEnd /STK=2 /UG=Rn.56072 /UG_TITLE=ESTs, Highly similar to S52735 CW17R protein - mouse (M.musculus) BF283079 splicing factor 1 Sf1 117855 NM_001110793 /// NM_058210 0006917 // induction of apoptosis // non-traceable author statement /// 0022402 // cell cycle process // inferred from electronic annotation /// 0030238 // male sex determination // inferred from electronic annotation /// 0033327 // Leydig cell differentiation // inferred from electronic annotation /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0050810 // regulation of steroid biosynthetic process // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1380107_a_at BM384521 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384521 /DB_XREF=gi:18184574 /DB_XREF=UI-R-CN1-cjs-d-21-0-UI.s2 /CLONE=UI-R-CN1-cjs-d-21-0-UI /FEA=EST /CNT=3 /TID=Rn.76732.1 /TIER=ConsEnd /STK=2 /UG=Rn.76732 /UG_TITLE=ESTs BM384521 N-acetyltransferase 8-like Nat8l 289727 NM_001191681 /// XM_001060523 /// XM_223538 0008152 // metabolic process // inferred from electronic annotation 0008080 // N-acetyltransferase activity // inferred from electronic annotation 1380108_at BI289053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289053 /DB_XREF=gi:14946229 /DB_XREF=UI-R-DK0-cfe-a-02-0-UI.s1 /CLONE=UI-R-DK0-cfe-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.70791.1 /TIER=ConsEnd /STK=2 /UG=Rn.70791 /UG_TITLE=ESTs BI289053 WW domain binding protein 1 Wbp1 297381 NM_001106600 0005515 // protein binding // not recorded /// 0050699 // WW domain binding // not recorded 1380109_at BI290295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290295 /DB_XREF=gi:14948734 /DB_XREF=UI-R-DK0-cfu-e-11-0-UI.s1 /CLONE=UI-R-DK0-cfu-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.32816.1 /TIER=ConsEnd /STK=2 /UG=Rn.32816 /UG_TITLE=ESTs, Moderately similar to HETEROCHROMATIN PROTEIN 1 HOMOLOG GAMMA (M.musculus) BI290295 chromobox homolog 1 (HP1 beta homolog Drosophila ) Cbx1 360609 XM_001081346 /// XM_340885 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0000775 // chromosome, centromeric region // not recorded /// 0000785 // chromatin // inferred from electronic annotation /// 0000785 // chromatin // not recorded /// 0001939 // female pronucleus // not recorded /// 0001940 // male pronucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005721 // centromeric heterochromatin // not recorded /// 0005819 // spindle // not recorded /// 0010369 // chromocenter // not recorded 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0019899 // enzyme binding // not recorded 1380110_at AI229643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229643 /DB_XREF=gi:3813530 /DB_XREF=EST226338 /CLONE=REMCJ83 /FEA=EST /CNT=3 /TID=Rn.13273.1 /TIER=ConsEnd /STK=2 /UG=Rn.13273 /UG_TITLE=ESTs AI229643 Janus kinase 2 Jak2 24514 NM_031514 0000186 // activation of MAPKK activity // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from sequence or structural similarity /// 0007165 // signal transduction // inferred from electronic annotation /// 0007167 // enzyme linked receptor protein signaling pathway // inferred from electronic annotation /// 0007167 // enzyme linked receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0007243 // intracellular protein kinase cascade // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007259 // JAK-STAT cascade // inferred from direct assay /// 0007259 // JAK-STAT cascade // not recorded /// 0007259 // JAK-STAT cascade // inferred from electronic annotation /// 0007260 // tyrosine phosphorylation of STAT protein // not recorded /// 0007260 // tyrosine phosphorylation of STAT protein // inferred from electronic annotation /// 0007262 // STAT protein nuclear translocation // inferred from electronic annotation /// 0007262 // STAT protein nuclear translocation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008631 // induction of apoptosis by oxidative stress // inferred from mutant phenotype /// 0009755 // hormone-mediated signaling pathway // inferred from direct assay /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from sequence or structural similarity /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0022408 // negative regulation of cell-cell adhesion // inferred from mutant phenotype /// 0030099 // myeloid cell differentiation // not recorded /// 0030099 // myeloid cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // not recorded /// 0030218 // erythrocyte differentiation // inferred from sequence or structural similarity /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0031103 // axon regeneration // inferred from mutant phenotype /// 0031959 // mineralocorticoid receptor signaling pathway // inferred from mutant phenotype /// 0032024 // positive regulation of insulin secretion // inferred from mutant phenotype /// 0032516 // positive regulation of phosphoprotein phosphatase activity // inferred from mutant phenotype /// 0032731 // positive regulation of interleukin-1 beta production // inferred from mutant phenotype /// 0033160 // positive regulation of protein import into nucleus, translocation // inferred from mutant phenotype /// 0033194 // response to hydroperoxide // inferred from mutant phenotype /// 0035409 // histone H3-Y41 phosphorylation // not recorded /// 0035409 // histone H3-Y41 phosphorylation // inferred from sequence or structural similarity /// 0035409 // histone H3-Y41 phosphorylation // inferred from electronic annotation /// 0042503 // tyrosine phosphorylation of Stat3 protein // inferred from mutant phenotype /// 0042508 // tyrosine phosphorylation of Stat1 protein // inferred from mutant phenotype /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // inferred from electronic annotation /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // not recorded /// 0042523 // positive regulation of tyrosine phosphorylation of Stat5 protein // inferred from electronic annotation /// 0042523 // positive regulation of tyrosine phosphorylation of Stat5 protein // not recorded /// 0042977 // activation of JAK2 kinase activity // not recorded /// 0042977 // activation of JAK2 kinase activity // inferred from sequence or structural similarity /// 0042977 // activation of JAK2 kinase activity // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043388 // positive regulation of DNA binding // inferred from mutant phenotype /// 0043392 // negative regulation of DNA binding // inferred from electronic annotation /// 0043392 // negative regulation of DNA binding // not recorded /// 0043526 // neuroprotection // inferred from mutant phenotype /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from mutant phenotype /// 0045597 // positive regulation of cell differentiation // inferred from mutant phenotype /// 0045822 // negative regulation of heart contraction // inferred from mutant phenotype /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0046677 // response to antibiotic // not recorded /// 0046777 // protein autophosphorylation // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from sequence or structural similarity /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from mutant phenotype /// 0050729 // positive regulation of inflammatory response // inferred from mutant phenotype /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050867 // positive regulation of cell activation // inferred from mutant phenotype /// 0051091 // positive regulation of transcription factor activity // inferred from mutant phenotype /// 0060397 // JAK-STAT cascade involved in growth hormone signaling pathway // not recorded /// 0060397 // JAK-STAT cascade involved in growth hormone signaling pathway // inferred from sequence or structural similarity /// 0060397 // JAK-STAT cascade involved in growth hormone signaling pathway // inferred from electronic annotation /// 0060399 // positive regulation of growth hormone receptor signaling pathway // inferred from electronic annotation /// 0060399 // positive regulation of growth hormone receptor signaling pathway // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005901 // caveola // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from direct assay /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from mutant phenotype /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from sequence or structural similarity /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005131 // growth hormone receptor binding // inferred from physical interaction /// 0005143 // interleukin-12 receptor binding // inferred from electronic annotation /// 0005143 // interleukin-12 receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0033130 // acetylcholine receptor binding // inferred from physical interaction /// 0035401 // histone kinase activity (H3-Y41 specific) // not recorded /// 0035401 // histone kinase activity (H3-Y41 specific) // inferred from sequence or structural similarity /// 0035401 // histone kinase activity (H3-Y41 specific) // inferred from electronic annotation /// 0042169 // SH2 domain binding // inferred from electronic annotation /// 0042169 // SH2 domain binding // not recorded /// 0042393 // histone binding // not recorded /// 0042393 // histone binding // inferred from sequence or structural similarity /// 0042393 // histone binding // inferred from electronic annotation /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction /// 0043560 // insulin receptor substrate binding // inferred from physical interaction /// 0051428 // peptide hormone receptor binding // inferred from physical interaction 1380111_at AI578095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578095 /DB_XREF=gi:4562471 /DB_XREF=UI-R-C3-tk-e-09-0-UI.s2 /CLONE=UI-R-C3-tk-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.44911.1 /TIER=ConsEnd /STK=2 /UG=Rn.44911 /UG_TITLE=ESTs AI578095 1380112_at AW531114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531114 /DB_XREF=gi:7173528 /DB_XREF=UI-R-C4-alg-h-04-0-UI.s1 /CLONE=UI-R-C4-alg-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.47642.1 /TIER=ConsEnd /STK=2 /UG=Rn.47642 /UG_TITLE=ESTs AW531114 1380113_at BI289454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289454 /DB_XREF=gi:14947042 /DB_XREF=UI-R-DK0-cfh-c-04-0-UI.s1 /CLONE=UI-R-DK0-cfh-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.16661.1 /TIER=ConsEnd /STK=2 /UG=Rn.16661 /UG_TITLE=ESTs BI289454 1380114_at BI289106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289106 /DB_XREF=gi:14946334 /DB_XREF=UI-R-DK0-cfe-e-11-0-UI.s1 /CLONE=UI-R-DK0-cfe-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.43878.1 /TIER=ConsEnd /STK=2 /UG=Rn.43878 /UG_TITLE=ESTs BI289106 1380115_at AA850751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850751 /DB_XREF=gi:2938291 /DB_XREF=EST193519 /CLONE=ROVAK37 /FEA=EST /CNT=3 /TID=Rn.24137.1 /TIER=ConsEnd /STK=2 /UG=Rn.24137 /UG_TITLE=ESTs AA850751 1380116_at AI146098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146098 /DB_XREF=gi:3667897 /DB_XREF=UI-R-E1-fb-e-04-0-UI.s1 /CLONE=UI-R-E1-fb-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.28733.1 /TIER=ConsEnd /STK=2 /UG=Rn.28733 /UG_TITLE=ESTs AI146098 similar to Human T-cell leukemia virus enhancer factor (Forkhead box protein N2) RGD1562291 301676 XM_001057462 /// XM_002726714 /// XM_237502 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1380117_at BF397842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397842 /DB_XREF=gi:11382826 /DB_XREF=UI-R-BS2-bec-c-08-0-UI.s1 /CLONE=UI-R-BS2-bec-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.58908.1 /TIER=ConsEnd /STK=2 /UG=Rn.58908 /UG_TITLE=ESTs BF397842 1380118_at BI275569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275569 /DB_XREF=gi:14919608 /DB_XREF=UI-R-CX0-bwy-h-07-0-UI.s1 /CLONE=UI-R-CX0-bwy-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.67727.1 /TIER=ConsEnd /STK=2 /UG=Rn.67727 /UG_TITLE=ESTs BI275569 ferredoxin-fold anticodon binding domain containing 1 Fdxacb1 315646 NM_001108145 0006432 // phenylalanyl-tRNA aminoacylation // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0043039 // tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000049 // tRNA binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004826 // phenylalanine-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1380119_at AA996432 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996432 /DB_XREF=gi:4280199 /DB_XREF=UI-R-C0-he-h-01-0-UI.s1 /CLONE=UI-R-C0-he-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.12275.1 /TIER=ConsEnd /STK=2 /UG=Rn.12275 /UG_TITLE=ESTs AA996432 1380120_at BG374192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374192 /DB_XREF=gi:13298664 /DB_XREF=UI-R-CV1-bsm-e-02-0-UI.s1 /CLONE=UI-R-CV1-bsm-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.66196.1 /TIER=ConsEnd /STK=2 /UG=Rn.66196 /UG_TITLE=ESTs BG374192 1380121_at BE117215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117215 /DB_XREF=gi:8509320 /DB_XREF=UI-R-BS1-ayh-b-08-0-UI.s1 /CLONE=UI-R-BS1-ayh-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.52796.1 /TIER=ConsEnd /STK=2 /UG=Rn.52796 /UG_TITLE=ESTs BE117215 NIMA (never in mitosis gene a)-related kinase 7 Nek7 360850 NM_001108346 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1380122_at AW530072 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530072 /DB_XREF=gi:7172486 /DB_XREF=UI-R-C4-ald-c-05-0-UI.s1 /CLONE=UI-R-C4-ald-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.34707.1 /TIER=ConsEnd /STK=2 /UG=Rn.34707 /UG_TITLE=ESTs AW530072 1380123_at BG374569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374569 /DB_XREF=gi:13299081 /DB_XREF=UI-R-CV1-bta-d-03-0-UI.s1 /CLONE=UI-R-CV1-bta-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.13463.1 /TIER=ConsEnd /STK=2 /UG=Rn.13463 /UG_TITLE=ESTs BG374569 transmembrane protein 79 Tmem79 310626 NM_001033896 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1380124_at BF388563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388563 /DB_XREF=gi:11373387 /DB_XREF=UI-R-BS2-bdd-a-01-0-UI.s1 /CLONE=UI-R-BS2-bdd-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.20815.1 /TIER=ConsEnd /STK=2 /UG=Rn.20815 /UG_TITLE=ESTs BF388563 1380125_at BM384823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384823 /DB_XREF=gi:18184871 /DB_XREF=UI-R-DY0-ckl-i-20-0-UI.s1 /CLONE=UI-R-DY0-ckl-i-20-0-UI /FEA=EST /CNT=3 /TID=Rn.43885.1 /TIER=ConsEnd /STK=2 /UG=Rn.43885 /UG_TITLE=ESTs BM384823 1380126_at BF409826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409826 /DB_XREF=gi:11397801 /DB_XREF=UI-R-CA1-bjr-c-05-0-UI.s1 /CLONE=UI-R-CA1-bjr-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.61494.1 /TIER=ConsEnd /STK=2 /UG=Rn.61494 /UG_TITLE=ESTs BF409826 1380127_at AI009500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009500 /DB_XREF=gi:3223332 /DB_XREF=EST203951 /CLONE=RHEBK87 /FEA=EST /CNT=3 /TID=Rn.13916.1 /TIER=ConsEnd /STK=2 /UG=Rn.13916 /UG_TITLE=ESTs AI009500 1380128_at AI237408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237408 /DB_XREF=gi:4136315 /DB_XREF=EST233970 /CLONE=RPLCY69 /FEA=EST /CNT=3 /TID=Rn.16499.1 /TIER=ConsEnd /STK=2 /UG=Rn.16499 /UG_TITLE=ESTs, Weakly similar to T43494 hypothetical protein DKFZp434C229.1 (H.sapiens) AI237408 leucine zipper-EF-hand containing transmembrane protein 2 Letm2 361169 NM_001012158 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1380129_at AA818937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818937 /DB_XREF=gi:4227607 /DB_XREF=UI-R-A0-as-d-01-0-UI.s1 /CLONE=UI-R-A0-as-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.33125.1 /TIER=ConsEnd /STK=2 /UG=Rn.33125 /UG_TITLE=ESTs AA818937 1380130_at AW434319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434319 /DB_XREF=gi:6965626 /DB_XREF=UI-R-BJ0p-afw-g-10-0-UI.s1 /CLONE=UI-R-BJ0p-afw-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.42616.1 /TIER=ConsEnd /STK=2 /UG=Rn.42616 /UG_TITLE=ESTs AW434319 1380131_at BE116354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116354 /DB_XREF=gi:8508459 /DB_XREF=UI-R-BS1-ayc-c-09-0-UI.s1 /CLONE=UI-R-BS1-ayc-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.42062.1 /TIER=ConsEnd /STK=2 /UG=Rn.42062 /UG_TITLE=ESTs BE116354 WD repeat domain 37 Wdr37 307075 NM_001107362 1380132_at BI291804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291804 /DB_XREF=gi:14951704 /DB_XREF=UI-R-DN0-cit-f-24-0-UI.s1 /CLONE=UI-R-DN0-cit-f-24-0-UI /FEA=EST /CNT=3 /TID=Rn.63894.1 /TIER=ConsEnd /STK=2 /UG=Rn.63894 /UG_TITLE=ESTs BI291804 1380133_at BI289743 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289743 /DB_XREF=gi:14947636 /DB_XREF=UI-R-DK0-cfn-f-08-0-UI.s1 /CLONE=UI-R-DK0-cfn-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.13228.1 /TIER=ConsEnd /STK=2 /UG=Rn.13228 /UG_TITLE=ESTs, Moderately similar to S72227 finger protein sob - fruit fly (D.melanogaster) BI289743 odd-skipped related 2 (Drosophila) Osr2 315039 NM_001012118 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0033687 // osteoblast proliferation // inferred from electronic annotation /// 0033687 // osteoblast proliferation // not recorded /// 0042474 // middle ear morphogenesis // inferred from electronic annotation /// 0042474 // middle ear morphogenesis // not recorded /// 0042476 // odontogenesis // inferred from electronic annotation /// 0042476 // odontogenesis // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded /// 0060349 // bone morphogenesis // inferred from electronic annotation /// 0060349 // bone morphogenesis // not recorded /// 0061029 // eyelid development in camera-type eye // inferred from electronic annotation /// 0061029 // eyelid development in camera-type eye // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1380134_at AI639163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639163 /DB_XREF=gi:4700197 /DB_XREF=rx01182s /CLONE=rx01182 /FEA=EST /CNT=3 /TID=Rn.38859.1 /TIER=ConsEnd /STK=2 /UG=Rn.38859 /UG_TITLE=ESTs AI639163 V-set domain containing T cell activation inhibitor 1 Vtcn1 295322 NM_001024244 0050868 // negative regulation of T cell activation // inferred from electronic annotation /// 0050868 // negative regulation of T cell activation // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded 1380135_at AW531996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531996 /DB_XREF=gi:7174410 /DB_XREF=UI-R-C4-alh-g-12-0-UI.s1 /CLONE=UI-R-C4-alh-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.47863.1 /TIER=ConsEnd /STK=2 /UG=Rn.47863 /UG_TITLE=ESTs AW531996 1380136_at AW433986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433986 /DB_XREF=gi:6965293 /DB_XREF=UI-R-BJ0p-afn-h-09-0-UI.s1 /CLONE=UI-R-BJ0p-afn-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.50224.1 /TIER=ConsEnd /STK=2 /UG=Rn.50224 /UG_TITLE=ESTs AW433986 1380137_at BF406176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406176 /DB_XREF=gi:11394151 /DB_XREF=UI-R-CA1-bjf-m-09-0-UI.s1 /CLONE=UI-R-CA1-bjf-m-09-0-UI /FEA=EST /CNT=3 /TID=Rn.60916.1 /TIER=ConsEnd /STK=2 /UG=Rn.60916 /UG_TITLE=ESTs BF406176 1380138_at AI385182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385182 /DB_XREF=gi:4197964 /DB_XREF=UI-R-E0-cu-b-08-0-UI.s1 /CLONE=UI-R-E0-cu-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.33288.1 /TIER=ConsEnd /STK=2 /UG=Rn.33288 /UG_TITLE=ESTs AI385182 Heparan sulfate 6-O-sulfotransferase 2 Hs6st2 302489 NM_001191726 /// XM_002727670 /// XM_002727671 /// XM_002730294 /// XM_228681 0016051 // carbohydrate biosynthetic process // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0008146 // sulfotransferase activity // inferred from electronic annotation 1380139_at AI500762 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI500762 /DB_XREF=gi:4398613 /DB_XREF=UI-R-C2p-rn-f-06-0-UI.s1 /CLONE=UI-R-C2p-rn-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.36132.1 /TIER=ConsEnd /STK=2 /UG=Rn.36132 /UG_TITLE=ESTs AI500762 1380140_at BF284487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284487 /DB_XREF=gi:11215557 /DB_XREF=EST449078 /CLONE=RGIER08 /FEA=EST /CNT=3 /TID=Rn.29468.1 /TIER=ConsEnd /STK=2 /UG=Rn.29468 /UG_TITLE=ESTs BF284487 1380141_at AW526109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526109 /DB_XREF=gi:7168494 /DB_XREF=UI-R-BO1-aiz-c-11-0-UI.s1 /CLONE=UI-R-BO1-aiz-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.49080.1 /TIER=ConsEnd /STK=2 /UG=Rn.49080 /UG_TITLE=ESTs AW526109 NOL1/NOP2/Sun domain family, member 4 Nsun4 298426 NM_001106678 1380142_at BF398019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398019 /DB_XREF=gi:11383004 /DB_XREF=UI-R-BS2-beg-d-05-0-UI.s1 /CLONE=UI-R-BS2-beg-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.14746.1 /TIER=ConsEnd /STK=2 /UG=Rn.14746 /UG_TITLE=ESTs BF398019 Homeo box B8 Hoxb8 24457 NM_001191649 /// XM_220888 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007625 // grooming behavior // inferred from electronic annotation /// 0007625 // grooming behavior // not recorded /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0019233 // sensory perception of pain // not recorded /// 0021516 // dorsal spinal cord development // inferred from electronic annotation /// 0021516 // dorsal spinal cord development // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048705 // skeletal system morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1380143_at AI029786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029786 /DB_XREF=gi:4300966 /DB_XREF=UI-R-C0-iz-f-03-0-UI.s1 /CLONE=UI-R-C0-iz-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.18034.1 /TIER=ConsEnd /STK=2 /UG=Rn.18034 /UG_TITLE=ESTs AI029786 1380144_at BE103512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103512 /DB_XREF=gi:8495611 /DB_XREF=UI-R-BX0-ard-a-03-0-UI.s1 /CLONE=UI-R-BX0-ard-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.27402.1 /TIER=ConsEnd /STK=2 /UG=Rn.27402 /UG_TITLE=ESTs BE103512 MOB1, Mps One Binder kinase activator-like 1A (yeast) Mobkl1a 360920 NM_001108357 0035329 // hippo signaling cascade // not recorded /// 0046777 // protein autophosphorylation // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0019209 // kinase activator activity // not recorded /// 0019900 // kinase binding // not recorded 1380145_at AW529414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529414 /DB_XREF=gi:7171828 /DB_XREF=UI-R-BT1-akk-a-04-0-UI.s1 /CLONE=UI-R-BT1-akk-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.32969.1 /TIER=ConsEnd /STK=2 /UG=Rn.32969 /UG_TITLE=ESTs AW529414 1380146_at AI010736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010736 /DB_XREF=gi:3224568 /DB_XREF=EST205187 /CLONE=RMUAQ73 /FEA=EST /CNT=3 /TID=Rn.17622.1 /TIER=ConsEnd /STK=2 /UG=Rn.17622 /UG_TITLE=ESTs AI010736 1380147_at AI547456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547456 /DB_XREF=gi:4464944 /DB_XREF=UI-R-C3-sl-b-07-0-UI.s1 /CLONE=UI-R-C3-sl-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.43294.1 /TIER=ConsEnd /STK=2 /UG=Rn.43294 /UG_TITLE=ESTs AI547456 1380148_at BE118688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118688 /DB_XREF=gi:8510793 /DB_XREF=UI-R-BS1-azr-f-01-0-UI.s1 /CLONE=UI-R-BS1-azr-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.53029.1 /TIER=ConsEnd /STK=2 /UG=Rn.53029 /UG_TITLE=ESTs BE118688 1380149_at AI029259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029259 /DB_XREF=gi:4297328 /DB_XREF=UI-R-C0-iv-g-04-0-UI.s1 /CLONE=UI-R-C0-iv-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.23191.1 /TIER=ConsEnd /STK=2 /UG=Rn.23191 /UG_TITLE=ESTs AI029259 Growth arrest-specific 2 like 3 Gas2l3 680280 XM_001056437 /// XM_002726881 1380150_at AI008553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008553 /DB_XREF=gi:3222385 /DB_XREF=EST203004 /CLONE=REMAY92 /FEA=EST /CNT=3 /TID=Rn.39361.1 /TIER=ConsEnd /STK=2 /UG=Rn.39361 /UG_TITLE=ESTs AI008553 1380151_at BG374625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374625 /DB_XREF=gi:13299062 /DB_XREF=UI-R-CV1-bta-b-07-0-UI.s1 /CLONE=UI-R-CV1-bta-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.52840.1 /TIER=ConsEnd /STK=2 /UG=Rn.52840 /UG_TITLE=ESTs, Weakly similar to SSN6_YEAST GLUCOSE REPRESSION MEDIATOR PROTEIN (S.cerevisiae) BG374625 1380152_at BF407782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407782 /DB_XREF=gi:11395757 /DB_XREF=UI-R-BJ2-brd-e-01-0-UI.s1 /CLONE=UI-R-BJ2-brd-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.16568.1 /TIER=ConsEnd /STK=2 /UG=Rn.16568 /UG_TITLE=ESTs BF407782 1380153_at AW527209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527209 /DB_XREF=gi:7169623 /DB_XREF=UI-R-BO1-ajm-g-03-0-UI.s1 /CLONE=UI-R-BO1-ajm-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.46454.1 /TIER=ConsEnd /STK=2 /UG=Rn.46454 /UG_TITLE=ESTs AW527209 1380154_at BF410417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410417 /DB_XREF=gi:11398392 /DB_XREF=UI-R-CA1-bjx-c-06-0-UI.s1 /CLONE=UI-R-CA1-bjx-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.47124.1 /TIER=ConsEnd /STK=2 /UG=Rn.47124 /UG_TITLE=ESTs, Moderately similar to 2016304A motor protein (H.sapiens) BF410417 inner membrane protein, mitochondrial Immt 312444 NM_001034928 0009409 // response to cold // inferred from expression pattern 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031305 // integral to mitochondrial inner membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1380155_at AI137306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137306 /DB_XREF=gi:3638083 /DB_XREF=UI-R-C2p-ol-e-05-0-UI.s1 /CLONE=UI-R-C2p-ol-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.27384.1 /TIER=ConsEnd /STK=2 /UG=Rn.27384 /UG_TITLE=ESTs AI137306 1380156_at BF396185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396185 /DB_XREF=gi:11381197 /DB_XREF=UI-R-BS2-bdv-g-02-0-UI.s1 /CLONE=UI-R-BS2-bdv-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.41292.1 /TIER=ConsEnd /STK=2 /UG=Rn.41292 /UG_TITLE=ESTs BF396185 1380157_at BG379007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379007 /DB_XREF=gi:13303479 /DB_XREF=UI-R-BT1-bnm-c-11-0-UI.s1 /CLONE=UI-R-BT1-bnm-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.66624.1 /TIER=ConsEnd /STK=2 /UG=Rn.66624 /UG_TITLE=ESTs, Weakly similar to ubiquitin conjugating enzyme (Rattus norvegicus) (R.norvegicus) BG379007 ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast) Ube2g2 294331 NM_001106380 0030433 // ER-associated protein catabolic process // inferred from electronic annotation /// 0030433 // ER-associated protein catabolic process // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1380158_at BF284973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284973 /DB_XREF=gi:11216043 /DB_XREF=EST449564 /CLONE=RGIEY26 /FEA=EST /CNT=3 /TID=Rn.1207.1 /TIER=ConsEnd /STK=2 /UG=Rn.1207 /UG_TITLE=ESTs BF284973 1380159_at BE097272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097272 /DB_XREF=gi:8488203 /DB_XREF=UI-R-BO1-apv-d-05-0-UI.s1 /CLONE=UI-R-BO1-apv-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.68375.1 /TIER=ConsEnd /STK=2 /UG=Rn.68375 /UG_TITLE=ESTs BE097272 progressive external ophthalmoplegia 1 Peo1 309441 NM_001107599 0006260 // DNA replication // inferred from electronic annotation /// 0006264 // mitochondrial DNA replication // not recorded /// 0006268 // DNA unwinding involved in replication // not recorded /// 0006390 // transcription from mitochondrial promoter // not recorded /// 0034214 // protein hexamerization // not recorded /// 0051260 // protein homooligomerization // not recorded 0005739 // mitochondrion // not recorded /// 0042645 // mitochondrial nucleoid // not recorded 0002020 // protease binding // not recorded /// 0003678 // DNA helicase activity // inferred from electronic annotation /// 0003678 // DNA helicase activity // not recorded /// 0003697 // single-stranded DNA binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0043139 // 5'-3' DNA helicase activity // not recorded 1380160_at AW522858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522858 /DB_XREF=gi:7165243 /DB_XREF=UI-R-BO0-ahn-e-11-0-UI.s1 /CLONE=UI-R-BO0-ahn-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.27560.1 /TIER=ConsEnd /STK=2 /UG=Rn.27560 /UG_TITLE=ESTs, Moderately similar to DRP2_HUMAN DYSTROPHIN-RELATED PROTEIN 2 (H.sapiens) AW522858 dystrophin related protein 2 Drp2 66027 NM_023971 0050808 // synapse organization // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0030425 // dendrite // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380161_at AW916617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916617 /DB_XREF=gi:8082347 /DB_XREF=EST347921 /CLONE=RGIDS46 /FEA=EST /CNT=3 /TID=Rn.49244.1 /TIER=ConsEnd /STK=2 /UG=Rn.49244 /UG_TITLE=ESTs AW916617 1380162_at BI274645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274645 /DB_XREF=gi:14885753 /DB_XREF=UI-R-CX0-bws-c-12-0-UI.s1 /CLONE=UI-R-CX0-bws-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.72896.1 /TIER=ConsEnd /STK=2 /UG=Rn.72896 /UG_TITLE=ESTs BI274645 1380163_at BI302685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302685 /DB_XREF=gi:14978965 /DB_XREF=UI-R-DO0-cix-j-04-0-UI.s1 /CLONE=UI-R-DO0-cix-j-04-0-UI /FEA=EST /CNT=3 /TID=Rn.51166.1 /TIER=ConsEnd /STK=2 /UG=Rn.51166 /UG_TITLE=ESTs BI302685 SEC23 interacting protein Sec23ip 309010 NM_001134859 0046872 // metal ion binding // inferred from electronic annotation 1380164_at AI411787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411787 /DB_XREF=gi:4255291 /DB_XREF=EST240081 /CLONE=RKIDR95 /FEA=EST /CNT=3 /TID=Rn.19343.1 /TIER=ConsEnd /STK=2 /UG=Rn.19343 /UG_TITLE=ESTs AI411787 thymidine kinase 2, mitochondrial Tk2 291824 NM_001106166 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006264 // mitochondrial DNA replication // not recorded /// 0009262 // deoxyribonucleotide metabolic process // not recorded /// 0032042 // mitochondrial DNA metabolic process // not recorded 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1380165_at AI234713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234713 /DB_XREF=gi:3828219 /DB_XREF=EST231275 /CLONE=ROVCG67 /FEA=EST /CNT=3 /TID=Rn.21824.1 /TIER=ConsEnd /STK=2 /UG=Rn.21824 /UG_TITLE=ESTs AI234713 1380166_at BE101632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101632 /DB_XREF=gi:8493730 /DB_XREF=UI-R-BT1-aqg-c-08-0-UI.s1 /CLONE=UI-R-BT1-aqg-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.50095.1 /TIER=ConsEnd /STK=2 /UG=Rn.50095 /UG_TITLE=ESTs BE101632 1380167_at BE116526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116526 /DB_XREF=gi:8508631 /DB_XREF=UI-R-BS1-ayj-c-07-0-UI.s1 /CLONE=UI-R-BS1-ayj-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.52691.1 /TIER=ConsEnd /STK=2 /UG=Rn.52691 /UG_TITLE=ESTs BE116526 1380168_at BE102969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102969 /DB_XREF=gi:8495068 /DB_XREF=UI-R-BT1-aqu-f-07-0-UI.s1 /CLONE=UI-R-BT1-aqu-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.38595.1 /TIER=ConsEnd /STK=2 /UG=Rn.38595 /UG_TITLE=ESTs BE102969 ets variant 4 Etv4 360635 NM_001108299 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008045 // motor axon guidance // inferred from electronic annotation /// 0008045 // motor axon guidance // not recorded /// 0033600 // negative regulation of mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0033600 // negative regulation of mammary gland epithelial cell proliferation // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0048863 // stem cell differentiation // inferred from electronic annotation /// 0048863 // stem cell differentiation // not recorded /// 0060444 // branching involved in mammary gland duct morphogenesis // not recorded /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060762 // regulation of branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060762 // regulation of branching involved in mammary gland duct morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1380169_at BF386350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386350 /DB_XREF=gi:11371174 /DB_XREF=UI-R-CA1-bbi-e-02-0-UI.s1 /CLONE=UI-R-CA1-bbi-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.60847.1 /TIER=ConsEnd /STK=2 /UG=Rn.60847 /UG_TITLE=ESTs BF386350 1380170_at BI303388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303388 /DB_XREF=gi:14979668 /DB_XREF=UI-R-DQ0-cja-e-19-0-UI.s1 /CLONE=UI-R-DQ0-cja-e-19-0-UI /FEA=EST /CNT=3 /TID=Rn.42023.1 /TIER=ConsEnd /STK=2 /UG=Rn.42023 /UG_TITLE=ESTs BI303388 GABA(A) receptor-associated protein like 2 Gabarapl2 64670 NM_022706 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0000139 // Golgi membrane // not recorded /// 0000421 // autophagic vacuole membrane // not recorded /// 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0005515 // protein binding // not recorded 1380171_at BI290076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290076 /DB_XREF=gi:14948304 /DB_XREF=UI-R-DK0-cfr-e-09-0-UI.s1 /CLONE=UI-R-DK0-cfr-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.79134.1 /TIER=ConsEnd /STK=2 /UG=Rn.79134 /UG_TITLE=ESTs BI290076 adrenergic, alpha-2B-, receptor Adra2b 24174 NM_138505 0000165 // MAPKKK cascade // not recorded /// 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000187 // activation of MAPK activity // inferred from mutant phenotype /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0003056 // regulation of vascular smooth muscle contraction // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0032148 // activation of protein kinase B activity // not recorded /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045777 // positive regulation of blood pressure // inferred from mutant phenotype /// 0070474 // positive regulation of uterine smooth muscle contraction // inferred from mutant phenotype 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004935 // adrenergic receptor activity // inferred from electronic annotation /// 0004935 // adrenergic receptor activity // not recorded /// 0004938 // alpha2-adrenergic receptor activity // inferred from direct assay /// 0004938 // alpha2-adrenergic receptor activity // not recorded /// 0004938 // alpha2-adrenergic receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051379 // epinephrine binding // not recorded 1380172_at BE104278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104278 /DB_XREF=gi:8496378 /DB_XREF=UI-R-BX0-arm-h-08-0-UI.s1 /CLONE=UI-R-BX0-arm-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.45560.1 /TIER=ConsEnd /STK=2 /UG=Rn.45560 /UG_TITLE=ESTs, Highly similar to KINN RAT NEURONAL KINESIN HEAVY CHAIN (R.norvegicus) BE104278 kinesin family member 5C Kif5c 311024 NM_001107730 0007018 // microtubule-based movement // inferred from electronic annotation /// 0008045 // motor axon guidance // inferred from electronic annotation /// 0008045 // motor axon guidance // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0035253 // ciliary rootlet // inferred from electronic annotation /// 0035253 // ciliary rootlet // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0034190 // apolipoprotein receptor binding // inferred from physical interaction 1380173_at BE106938 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106938 /DB_XREF=gi:8499040 /DB_XREF=UI-R-BT1-asu-h-08-0-UI.s1 /CLONE=UI-R-BT1-asu-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.47107.1 /TIER=ConsEnd /STK=2 /UG=Rn.47107 /UG_TITLE=ESTs BE106938 1380174_at BE116115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116115 /DB_XREF=gi:8508220 /DB_XREF=UI-R-BS1-axz-f-03-0-UI.s1 /CLONE=UI-R-BS1-axz-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.34448.1 /TIER=ConsEnd /STK=2 /UG=Rn.34448 /UG_TITLE=ESTs BE116115 1380175_at AI501853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501853 /DB_XREF=gi:4399704 /DB_XREF=UI-R-C2p-sd-b-08-0-UI.s1 /CLONE=UI-R-C2p-sd-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.35165.1 /TIER=ConsEnd /STK=2 /UG=Rn.35165 /UG_TITLE=ESTs AI501853 protein tyrosine phosphatase-like A domain containing 2 Ptplad2 362540 NM_001108669 1380176_at BE097967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097967 /DB_XREF=gi:8488946 /DB_XREF=UI-R-C4-amc-g-09-0-UI.s1 /CLONE=UI-R-C4-amc-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.49124.1 /TIER=ConsEnd /STK=2 /UG=Rn.49124 /UG_TITLE=ESTs BE097967 1380177_at BE097659 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097659 /DB_XREF=gi:8488590 /DB_XREF=UI-R-BO1-aqa-c-04-0-UI.s1 /CLONE=UI-R-BO1-aqa-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.49655.1 /TIER=ConsEnd /STK=2 /UG=Rn.49655 /UG_TITLE=ESTs BE097659 Methionine adenosyltransferase II, alpha Mat2a 171347 NM_134351 0006556 // S-adenosylmethionine biosynthetic process // not recorded /// 0006556 // S-adenosylmethionine biosynthetic process // traceable author statement /// 0006556 // S-adenosylmethionine biosynthetic process // inferred from electronic annotation /// 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from direct assay /// 0009416 // response to light stimulus // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from direct assay /// 0042493 // response to drug // inferred from direct assay /// 0051591 // response to cAMP // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004478 // methionine adenosyltransferase activity // not recorded /// 0004478 // methionine adenosyltransferase activity // traceable author statement /// 0004478 // methionine adenosyltransferase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380178_at AI228334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228334 /DB_XREF=gi:3812221 /DB_XREF=EST225029 /CLONE=RBRCT41 /FEA=EST /CNT=3 /TID=Rn.22982.1 /TIER=ConsEnd /STK=2 /UG=Rn.22982 /UG_TITLE=ESTs AI228334 1380179_at AI548649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548649 /DB_XREF=gi:4466137 /DB_XREF=UI-R-C3-tp-a-03-0-UI.s1 /CLONE=UI-R-C3-tp-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.30674.1 /TIER=ConsEnd /STK=2 /UG=Rn.30674 /UG_TITLE=ESTs AI548649 1380180_at AW528635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528635 /DB_XREF=gi:7171049 /DB_XREF=UI-R-BO1-ajr-f-06-0-UI.s1 /CLONE=UI-R-BO1-ajr-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.46950.1 /TIER=ConsEnd /STK=2 /UG=Rn.46950 /UG_TITLE=ESTs AW528635 1380181_at AI236017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236017 /DB_XREF=gi:3829523 /DB_XREF=EST232579 /CLONE=ROVDA28 /FEA=EST /CNT=3 /TID=Rn.48080.1 /TIER=ConsEnd /STK=2 /UG=Rn.48080 /UG_TITLE=ESTs, Weakly similar to HOMEOBOX PROTEIN LIM-2 (R.norvegicus) AI236017 LIM homeobox 4 Lhx4 360858 NM_001108348 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0008045 // motor axon guidance // not recorded /// 0009887 // organ morphogenesis // not recorded /// 0021526 // medial motor column neuron differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380182_at BF291123 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291123 /DB_XREF=gi:11222193 /DB_XREF=EST455714 /CLONE=RGIIJ08 /FEA=EST /CNT=3 /TID=Rn.43612.1 /TIER=ConsEnd /STK=2 /UG=Rn.43612 /UG_TITLE=ESTs BF291123 Similar to KIAA1217 RGD1563437 291356 XM_001069190 /// XM_214519 0048706 // embryonic skeletal system development // not recorded 0005737 // cytoplasm // not recorded 1380183_at AI237604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237604 /DB_XREF=gi:3831110 /DB_XREF=EST234166 /CLONE=RPLDB37 /FEA=EST /CNT=3 /TID=Rn.43460.1 /TIER=ConsEnd /STK=2 /UG=Rn.43460 /UG_TITLE=ESTs, Moderately similar to TRY2 RAT TRYPSIN II, ANIONIC PRECURSOR (R.norvegicus) AI237604 rCG28262-like /// similar to protease, serine, 3 (mesotrypsin) /// similar to Anionic trypsin II precursor (Pretrypsinogen II) /// similar to Anionic trypsin II precursor (Pretrypsinogen II) /// protease, serine, 1 (trypsin 1) /// protease, serine, 2 /// similar to trypsinogen 8 /// trypsin 10 LOC100365995 /// LOC362347 /// LOC679835 /// LOC683849 /// Prss1 /// Prss2 /// RGD1560283 /// Try10 100365995 /// 24691 /// 25052 /// 362347 /// 362348 /// 408247 /// 679835 /// 683849 NM_001004097 /// NM_001108626 /// NM_012635 /// NM_012729 /// XM_001054181 /// XM_001068290 /// XM_002726350 /// XM_002726351 /// XM_342669 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // inferred from sequence or structural similarity /// 0007584 // response to nutrient // inferred from expression pattern /// 0007586 // digestion // traceable author statement /// 0007586 // digestion // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from expression pattern /// 0030574 // collagen catabolic process // not recorded /// 0030574 // collagen catabolic process // inferred from sequence or structural similarity /// 0031000 // response to caffeine // inferred from direct assay /// 0035094 // response to nicotine // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380184_at AW521222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521222 /DB_XREF=gi:7163600 /DB_XREF=UI-R-BO0-agk-f-08-0-UI.s1 /CLONE=UI-R-BO0-agk-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.45135.1 /TIER=ConsEnd /STK=2 /UG=Rn.45135 /UG_TITLE=ESTs AW521222 Family with sequence similarity 19 (chemokine (C-C motif)-like), member A5 Fam19a5 500915 NM_001191991 /// XM_001053462 /// XM_002726967 /// XM_002729843 /// XM_576324 1380185_at BI303290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303290 /DB_XREF=gi:14979570 /DB_XREF=UI-R-DQ0-ciz-n-21-0-UI.s1 /CLONE=UI-R-DQ0-ciz-n-21-0-UI /FEA=EST /CNT=3 /TID=Rn.16156.1 /TIER=ConsEnd /STK=2 /UG=Rn.16156 /UG_TITLE=ESTs BI303290 similar to hypothetical protein FLJ22965 RGD1564541 313433 NM_001107950 0005515 // protein binding // not recorded 1380186_at AI101272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101272 /DB_XREF=gi:3706202 /DB_XREF=EST210561 /CLONE=RBRBK63 /FEA=EST /CNT=3 /TID=Rn.20430.1 /TIER=ConsEnd /STK=2 /UG=Rn.20430 /UG_TITLE=ESTs AI101272 1380187_at BI286219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286219 /DB_XREF=gi:14940650 /DB_XREF=UI-R-DE0-cai-b-09-0-UI.s1 /CLONE=UI-R-DE0-cai-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.21037.1 /TIER=ConsEnd /STK=2 /UG=Rn.21037 /UG_TITLE=ESTs BI286219 pleckstrin homology domain containing, family O member 1 Plekho1 310674 NM_001025119 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1380188_at BF407749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407749 /DB_XREF=gi:11395724 /DB_XREF=UI-R-BJ2-brd-b-04-0-UI.s1 /CLONE=UI-R-BJ2-brd-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.63966.1 /TIER=ConsEnd /STK=2 /UG=Rn.63966 /UG_TITLE=ESTs BF407749 Hypothetical protein LOC689298 LOC689298 689298 XM_001066188 /// XM_001070317 1380189_at BE112914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112914 /DB_XREF=gi:8505019 /DB_XREF=UI-R-BJ1-awa-c-10-0-UI.s1 /CLONE=UI-R-BJ1-awa-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.27411.1 /TIER=ConsEnd /STK=2 /UG=Rn.27411 /UG_TITLE=ESTs BE112914 1380190_at BE119566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119566 /DB_XREF=gi:8511671 /DB_XREF=UI-R-CA0-bag-c-06-0-UI.s1 /CLONE=UI-R-CA0-bag-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.51851.1 /TIER=ConsEnd /STK=2 /UG=Rn.51851 /UG_TITLE=ESTs, Weakly similar to neuropilin-2 (Rattus norvegicus) (R.norvegicus) BE119566 coagulation factor VIII, procoagulant component F8 302470 NM_183331 0007155 // cell adhesion // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from direct assay /// 0007597 // blood coagulation, intrinsic pathway // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0031093 // platelet alpha granule lumen // not recorded 0004252 // serine-type endopeptidase activity // inferred from direct assay /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380191_s_at BF555110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555110 /DB_XREF=gi:11664840 /DB_XREF=UI-R-E0-co-g-04-0-UI.r1 /CLONE=UI-R-E0-co-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.65518.1 /TIER=ConsEnd /STK=2 /UG=Rn.65518 /UG_TITLE=ESTs BF555110 thioredoxin-like 1 Txnl1 140922 NM_080887 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0015036 // disulfide oxidoreductase activity // not recorded 1380192_at AI105297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105297 /DB_XREF=gi:3709412 /DB_XREF=EST214586 /CLONE=RKIBI48 /FEA=EST /CNT=3 /TID=Rn.17630.2 /TIER=ConsEnd /STK=2 /UG=Rn.17630 /UG_TITLE=ESTs, Weakly similar to T08680 hypothetical protein DKFZp564P0622.1 (H.sapiens) AI105297 antagonist of mitotic exit network 1 homolog (S. cerevisiae) Amn1 302032 NM_001008333 0005515 // protein binding // inferred from electronic annotation 1380193_at BM387449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387449 /DB_XREF=gi:18187502 /DB_XREF=UI-R-CN1-cjj-e-22-0-UI.s1 /CLONE=UI-R-CN1-cjj-e-22-0-UI /FEA=EST /CNT=3 /TID=Rn.20596.1 /TIER=ConsEnd /STK=2 /UG=Rn.20596 /UG_TITLE=ESTs BM387449 1380194_at AI716987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716987 /DB_XREF=gi:5034243 /DB_XREF=UI-R-Y0-acl-f-01-0-UI.s1 /CLONE=UI-R-Y0-acl-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.41536.1 /TIER=ConsEnd /STK=2 /UG=Rn.41536 /UG_TITLE=ESTs, Weakly similar to DSG1_HUMAN DESMOGLEIN 1 PRECURSOR (H.sapiens) AI716987 desmoglein 1 beta Dsg1b 291755 XM_002725320 /// XM_214616 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0050821 // protein stabilization // not recorded /// 0060135 // maternal process involved in female pregnancy // inferred from expression pattern 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // not recorded /// 0009898 // internal side of plasma membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016328 // lateral plasma membrane // inferred from direct assay /// 0030057 // desmosome // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0045295 // gamma-catenin binding // not recorded 1380195_at AI145357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145357 /DB_XREF=gi:3667150 /DB_XREF=UI-R-BT0-qe-a-03-0-UI.s1 /CLONE=UI-R-BT0-qe-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.23474.1 /TIER=ConsEnd /STK=2 /UG=Rn.23474 /UG_TITLE=ESTs AI145357 1380196_at AW526395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526395 /DB_XREF=gi:7168780 /DB_XREF=UI-R-BO1-ajb-f-04-0-UI.s1 /CLONE=UI-R-BO1-ajb-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.46182.1 /TIER=ConsEnd /STK=2 /UG=Rn.46182 /UG_TITLE=ESTs AW526395 1380197_at BE107160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107160 /DB_XREF=gi:8499265 /DB_XREF=UI-R-BS1-ayq-e-08-0-UI.s1 /CLONE=UI-R-BS1-ayq-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.51124.1 /TIER=ConsEnd /STK=2 /UG=Rn.51124 /UG_TITLE=ESTs BE107160 1380198_at BF564882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564882 /DB_XREF=gi:11674612 /DB_XREF=UI-R-BU0-amz-d-12-0-UI.r1 /CLONE=UI-R-BU0-amz-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.48057.1 /TIER=ConsEnd /STK=2 /UG=Rn.48057 /UG_TITLE=ESTs BF564882 1380199_at BI281105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281105 /DB_XREF=gi:14930511 /DB_XREF=UI-R-DD0-bzr-c-09-0-UI.s1 /CLONE=UI-R-DD0-bzr-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.51941.1 /TIER=ConsEnd /STK=2 /UG=Rn.51941 /UG_TITLE=ESTs BI281105 1380200_at AI102906 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102906 /DB_XREF=gi:3707545 /DB_XREF=EST212195 /CLONE=REMBU58 /FEA=EST /CNT=3 /TID=Rn.16111.2 /TIER=ConsEnd /STK=2 /UG=Rn.16111 /UG_TITLE=ESTs AI102906 1380201_at BF412675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412675 /DB_XREF=gi:11400664 /DB_XREF=UI-R-BT1-bnq-g-08-0-UI.s1 /CLONE=UI-R-BT1-bnq-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.38298.1 /TIER=ConsEnd /STK=2 /UG=Rn.38298 /UG_TITLE=ESTs BF412675 nucleolar protein 10 Nol10 313981 NM_001014076 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 1380202_at AI070003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070003 /DB_XREF=gi:3396254 /DB_XREF=UI-R-C1-lp-e-06-0-UI.s1 /CLONE=UI-R-C1-lp-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.21242.1 /TIER=ConsEnd /STK=2 /UG=Rn.21242 /UG_TITLE=ESTs AI070003 zinc finger protein 821 Znf821 307834 XR_085684 /// XR_086097 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1380203_at BI285498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285498 /DB_XREF=gi:14939199 /DB_XREF=UI-R-DD0-caa-h-01-0-UI.s1 /CLONE=UI-R-DD0-caa-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.29484.1 /TIER=ConsEnd /STK=2 /UG=Rn.29484 /UG_TITLE=ESTs BI285498 zinc finger protein 512B Znf512b 311721 NM_001107809 0008152 // metabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004849 // uridine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1380204_at BE116163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116163 /DB_XREF=gi:8508268 /DB_XREF=UI-R-BS1-aya-b-07-0-UI.s1 /CLONE=UI-R-BS1-aya-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.38609.1 /TIER=ConsEnd /STK=2 /UG=Rn.38609 /UG_TITLE=ESTs BE116163 1380205_at AI712549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712549 /DB_XREF=gi:5016349 /DB_XREF=UI-R-AF1-aap-g-08-0-UI.s1 /CLONE=UI-R-AF1-aap-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.43784.1 /TIER=ConsEnd /STK=2 /UG=Rn.43784 /UG_TITLE=ESTs, Weakly similar to A Chain A, Crystal Structure Of The Epsin N-Terminal Homology (Enth) Domain At 1.56 Angstrom Resolution (R.norvegicus) AI712549 Enthoprotin Enth 360515 NM_001002022 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0016044 // cellular membrane organization // not recorded /// 0048268 // clathrin coat assembly // inferred from mutant phenotype 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // not recorded /// 0030136 // clathrin-coated vesicle // inferred from direct assay 0030276 // clathrin binding // inferred from direct assay 1380206_at BE096005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096005 /DB_XREF=gi:8486936 /DB_XREF=UI-R-BU0-apk-c-02-0-UI.s1 /CLONE=UI-R-BU0-apk-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.47072.1 /TIER=ConsEnd /STK=2 /UG=Rn.47072 /UG_TITLE=ESTs BE096005 1380207_at BF289968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289968 /DB_XREF=gi:11221038 /DB_XREF=EST454559 /CLONE=RGIHM08 /FEA=EST /CNT=3 /TID=Rn.55854.1 /TIER=ConsEnd /STK=2 /UG=Rn.55854 /UG_TITLE=ESTs BF289968 1380208_at BF402618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402618 /DB_XREF=gi:11390593 /DB_XREF=UI-R-CA0-bhm-f-01-0-UI.s1 /CLONE=UI-R-CA0-bhm-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.59378.1 /TIER=ConsEnd /STK=2 /UG=Rn.59378 /UG_TITLE=ESTs BF402618 1380209_at AI176102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176102 /DB_XREF=gi:3726740 /DB_XREF=EST219681 /CLONE=ROVBK62 /FEA=EST /CNT=3 /TID=Rn.21104.1 /TIER=ConsEnd /STK=2 /UG=Rn.21104 /UG_TITLE=ESTs AI176102 1380210_at AI136325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136325 /DB_XREF=gi:3637102 /DB_XREF=UI-R-C2p-oa-g-05-0-UI.s1 /CLONE=UI-R-C2p-oa-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.27093.1 /TIER=ConsEnd /STK=2 /UG=Rn.27093 /UG_TITLE=ESTs, Moderately similar to A58583 testosterone-resistant immunity-associated protein IAP38 - mouse (M.musculus) AI136325 GTPase, IMAP family member 1 Gimap1 312312 NM_001034849 0005525 // GTP binding // inferred from electronic annotation 1380211_at BE109046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109046 /DB_XREF=gi:8501151 /DB_XREF=UI-R-BS1-azc-d-02-0-UI.s1 /CLONE=UI-R-BS1-azc-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.27806.1 /TIER=ConsEnd /STK=2 /UG=Rn.27806 /UG_TITLE=ESTs BE109046 1380212_at AA956814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956814 /DB_XREF=gi:4239288 /DB_XREF=UI-R-E1-ft-b-06-0-UI.s1 /CLONE=UI-R-E1-ft-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.32877.1 /TIER=ConsEnd /STK=2 /UG=Rn.32877 /UG_TITLE=ESTs AA956814 1380213_at AI599065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599065 /DB_XREF=gi:4608113 /DB_XREF=EST250768 /CLONE=REMEB09 /FEA=EST /CNT=3 /TID=Rn.40198.1 /TIER=ConsEnd /STK=2 /UG=Rn.40198 /UG_TITLE=ESTs AI599065 Muscleblind-like 1 (Drosophila) Mbnl1 282635 NM_001191566 /// XM_001062557 /// XM_001075864 /// XM_002725954 /// XM_002725955 /// XM_002725956 /// XM_002725957 /// XM_002729038 /// XM_002729039 /// XM_002729040 /// XM_002729041 0000381 // regulation of alternative nuclear mRNA splicing, via spliceosome // inferred from electronic annotation /// 0000381 // regulation of alternative nuclear mRNA splicing, via spliceosome // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0006376 // mRNA splice site selection // inferred from electronic annotation /// 0006376 // mRNA splice site selection // not recorded /// 0007399 // nervous system development // not recorded /// 0007517 // muscle organ development // not recorded /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0008380 // RNA splicing // not recorded /// 0030326 // embryonic limb morphogenesis // not recorded /// 0043484 // regulation of RNA splicing // inferred from electronic annotation /// 0043484 // regulation of RNA splicing // not recorded /// 0045445 // myoblast differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0010494 // stress granule // inferred from electronic annotation /// 0010494 // stress granule // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1380214_at BE118929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118929 /DB_XREF=gi:8511034 /DB_XREF=UI-R-BS1-azw-d-11-0-UI.s1 /CLONE=UI-R-BS1-azw-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.41830.1 /TIER=ConsEnd /STK=2 /UG=Rn.41830 /UG_TITLE=ESTs BE118929 1380215_at BF390913 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390913 /DB_XREF=gi:11375760 /DB_XREF=UI-R-CA1-bce-a-08-0-UI.s1 /CLONE=UI-R-CA1-bce-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.55408.1 /TIER=ConsEnd /STK=2 /UG=Rn.55408 /UG_TITLE=ESTs BF390913 1380216_at BE098860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098860 /DB_XREF=gi:8490731 /DB_XREF=UI-R-BJ1-ate-f-10-0-UI.s1 /CLONE=UI-R-BJ1-ate-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.21601.1 /TIER=ConsEnd /STK=2 /UG=Rn.21601 /UG_TITLE=ESTs, Highly similar to T18290 FYVE finger-containing phosphoinositide kinase - mouse (M.musculus) BE098860 phosphoinositide kinase, FYVE finger containing Pikfyve 316457 XM_001072465 /// XM_237217 0006898 // receptor-mediated endocytosis // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // not recorded /// 0034504 // protein localization in nucleus // not recorded /// 0042147 // retrograde transport, endosome to Golgi // not recorded /// 0044267 // cellular protein metabolic process // inferred from electronic annotation /// 0046488 // phosphatidylinositol metabolic process // inferred from electronic annotation /// 0046854 // phosphoinositide phosphorylation // not recorded 0005829 // cytosol // not recorded /// 0010008 // endosome membrane // not recorded /// 0012506 // vesicle membrane // not recorded /// 0031410 // cytoplasmic vesicle // not recorded /// 0031901 // early endosome membrane // not recorded /// 0032593 // insulin-responsive compartment // not recorded /// 0045121 // membrane raft // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016307 // phosphatidylinositol phosphate kinase activity // inferred from electronic annotation /// 0016308 // 1-phosphatidylinositol-4-phosphate 5-kinase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1380217_at BI288924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288924 /DB_XREF=gi:14945975 /DB_XREF=UI-R-DK0-cdi-b-10-0-UI.s1 /CLONE=UI-R-DK0-cdi-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.65219.1 /TIER=ConsEnd /STK=2 /UG=Rn.65219 /UG_TITLE=ESTs BI288924 NDC80 homolog, kinetochore complex component (S. cerevisiae) Ndc80 301701 NM_001126270 0000132 // establishment of mitotic spindle orientation // inferred from electronic annotation /// 0000132 // establishment of mitotic spindle orientation // not recorded /// 0007052 // mitotic spindle organization // inferred from electronic annotation /// 0007052 // mitotic spindle organization // not recorded /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007059 // chromosome segregation // not recorded /// 0008608 // attachment of spindle microtubules to kinetochore // inferred from electronic annotation /// 0008608 // attachment of spindle microtubules to kinetochore // not recorded 0000776 // kinetochore // not recorded /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // not recorded /// 0000942 // condensed nuclear chromosome outer kinetochore // inferred from electronic annotation /// 0000942 // condensed nuclear chromosome outer kinetochore // not recorded /// 0031262 // Ndc80 complex // inferred from electronic annotation /// 0031262 // Ndc80 complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1380218_at BI296630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296630 /DB_XREF=gi:14961244 /DB_XREF=UI-R-CV2-cgt-e-03-0-UI.s1 /CLONE=UI-R-CV2-cgt-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.76718.1 /TIER=ConsEnd /STK=2 /UG=Rn.76718 /UG_TITLE=ESTs BI296630 cadherin-like 29 Cdh29 363144 XM_001074750 /// XM_002727137 /// XM_002729964 /// XM_343481 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1380219_at BE117902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117902 /DB_XREF=gi:8510007 /DB_XREF=UI-R-BS1-azm-c-12-0-UI.s1 /CLONE=UI-R-BS1-azm-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.19772.1 /TIER=ConsEnd /STK=2 /UG=Rn.19772 /UG_TITLE=ESTs BE117902 1380220_at AW534345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534345 /DB_XREF=gi:7176759 /DB_XREF=UI-R-C4-alo-d-03-0-UI.s1 /CLONE=UI-R-C4-alo-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.41610.1 /TIER=ConsEnd /STK=2 /UG=Rn.41610 /UG_TITLE=ESTs AW534345 1380221_at BE116223 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116223 /DB_XREF=gi:8508328 /DB_XREF=UI-R-BS1-aya-h-01-0-UI.s1 /CLONE=UI-R-BS1-aya-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.43447.1 /TIER=ConsEnd /STK=2 /UG=Rn.43447 /UG_TITLE=ESTs BE116223 Nuclear receptor binding SET domain protein 1 Nsd1 306764 NM_001107337 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001702 // gastrulation with mouth forming second // not recorded /// 0010452 // histone H3-K36 methylation // not recorded /// 0016571 // histone methylation // not recorded /// 0018022 // peptidyl-lysine methylation // not recorded /// 0034770 // histone H4-K20 methylation // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003682 // chromatin binding // not recorded /// 0003712 // transcription cofactor activity // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016922 // ligand-dependent nuclear receptor binding // not recorded /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0030331 // estrogen receptor binding // not recorded /// 0042054 // histone methyltransferase activity // not recorded /// 0042799 // histone methyltransferase activity (H4-K20 specific) // not recorded /// 0042974 // retinoic acid receptor binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // not recorded /// 0046966 // thyroid hormone receptor binding // not recorded /// 0046975 // histone methyltransferase activity (H3-K36 specific) // not recorded /// 0050681 // androgen receptor binding // not recorded 1380222_at AW527973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527973 /DB_XREF=gi:7170387 /DB_XREF=UI-R-BT1-akg-c-06-0-UI.s1 /CLONE=UI-R-BT1-akg-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.49118.1 /TIER=ConsEnd /STK=2 /UG=Rn.49118 /UG_TITLE=ESTs AW527973 1380223_at AI179452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179452 /DB_XREF=gi:3730090 /DB_XREF=EST223164 /CLONE=RSPCH54 /FEA=EST /CNT=3 /TID=Rn.23752.1 /TIER=ConsEnd /STK=2 /UG=Rn.23752 /UG_TITLE=ESTs AI179452 Crm, cramped-like (Drosophila) Cramp1l 287127 XM_001058347 /// XM_213246 0003677 // DNA binding // inferred from electronic annotation 1380224_at AI103321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103321 /DB_XREF=gi:3707876 /DB_XREF=EST212610 /CLONE=REMCA62 /FEA=EST /CNT=3 /TID=Rn.62495.1 /TIER=ConsEnd /STK=2 /UG=Rn.62495 /UG_TITLE=ESTs, Moderately similar to T29007 the above GenBank entry begins at aa 120 - Caenorhabditis elegans (C.elegans) AI103321 Elongation factor Tu GTP binding domain containing 2 Eftud2 287739 XM_001081526 /// XM_213492 0008380 // RNA splicing // not recorded 0005634 // nucleus // not recorded /// 0015030 // Cajal body // inferred from electronic annotation /// 0015030 // Cajal body // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1380225_at BF396725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396725 /DB_XREF=gi:11381705 /DB_XREF=UI-R-BS2-beu-d-10-0-UI.s1 /CLONE=UI-R-BS2-beu-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.21331.1 /TIER=ConsEnd /STK=2 /UG=Rn.21331 /UG_TITLE=ESTs BF396725 1380226_at BG376544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376544 /DB_XREF=gi:13301016 /DB_XREF=UI-R-CT0-bup-g-02-0-UI.s1 /CLONE=UI-R-CT0-bup-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.35240.1 /TIER=ConsEnd /STK=2 /UG=Rn.35240 /UG_TITLE=ESTs BG376544 Sterile alpha motif domain containing 10 Samd10 499957 NM_001191967 /// XM_001057159 /// XM_575305 1380227_at BF409095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409095 /DB_XREF=gi:11397070 /DB_XREF=UI-R-BT1-bkl-h-09-0-UI.s1 /CLONE=UI-R-BT1-bkl-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.64367.1 /TIER=ConsEnd /STK=2 /UG=Rn.64367 /UG_TITLE=ESTs BF409095 1380228_at BG672066 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672066 /DB_XREF=gi:13894165 /DB_XREF=DRNCBE09 /CLONE=DRNCBE09 /FEA=EST /CNT=3 /TID=Rn.74151.1 /TIER=ConsEnd /STK=2 /UG=Rn.74151 /UG_TITLE=ESTs BG672066 similar to hypothetical protein MGC47816 RGD1306880 313553 XM_001073980 /// XM_002729535 0006464 // protein modification process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1380229_at AW530004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530004 /DB_XREF=gi:7172418 /DB_XREF=UI-R-C4-alc-h-09-0-UI.s1 /CLONE=UI-R-C4-alc-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.31639.1 /TIER=ConsEnd /STK=2 /UG=Rn.31639 /UG_TITLE=ESTs AW530004 v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian) Maff 366960 NM_001130573 0001701 // in utero embryonic development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045604 // regulation of epidermal cell differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1380230_at AI639457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639457 /DB_XREF=gi:4700491 /DB_XREF=rx00592s /CLONE=rx00592 /FEA=EST /CNT=3 /TID=Rn.21136.1 /TIER=ConsEnd /STK=2 /UG=Rn.21136 /UG_TITLE=ESTs AI639457 1380231_at AI013485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013485 /DB_XREF=gi:4133884 /DB_XREF=EST208160 /CLONE=RSPBM17 /FEA=EST /CNT=3 /TID=Rn.24228.1 /TIER=ConsEnd /STK=2 /UG=Rn.24228 /UG_TITLE=ESTs, Weakly similar to 1809184A pregnancy-specific glycoprotein (R.norvegicus) AI013485 1380232_at BE119516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119516 /DB_XREF=gi:8511585 /DB_XREF=UI-R-CA0-bae-c-04-0-UI.s1 /CLONE=UI-R-CA0-bae-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.49017.1 /TIER=ConsEnd /STK=2 /UG=Rn.49017 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BE119516 1380233_x_at BE119516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119516 /DB_XREF=gi:8511585 /DB_XREF=UI-R-CA0-bae-c-04-0-UI.s1 /CLONE=UI-R-CA0-bae-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.49017.1 /TIER=ConsEnd /STK=2 /UG=Rn.49017 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BE119516 1380234_at BE105916 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105916 /DB_XREF=gi:8498018 /DB_XREF=UI-R-BO1-asj-f-12-0-UI.s1 /CLONE=UI-R-BO1-asj-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.49213.1 /TIER=ConsEnd /STK=2 /UG=Rn.49213 /UG_TITLE=ESTs BE105916 1380235_at AW530083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530083 /DB_XREF=gi:7172497 /DB_XREF=UI-R-C4-ald-d-04-0-UI.s1 /CLONE=UI-R-C4-ald-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.64159.1 /TIER=ConsEnd /STK=2 /UG=Rn.64159 /UG_TITLE=ESTs AW530083 heparan sulfate 2-O-sulfotransferase 1 Hs2st1 292155 NM_001100518 0015014 // heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process // inferred from electronic annotation /// 0015014 // heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process // not recorded /// 0016051 // carbohydrate biosynthetic process // inferred from electronic annotation /// 0030202 // heparin metabolic process // inferred from electronic annotation /// 0030202 // heparin metabolic process // not recorded /// 0060676 // ureteric bud formation // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0004394 // heparan sulfate 2-O-sulfotransferase activity // inferred from electronic annotation /// 0004394 // heparan sulfate 2-O-sulfotransferase activity // not recorded /// 0008146 // sulfotransferase activity // inferred from electronic annotation 1380236_at BM390141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390141 /DB_XREF=gi:18190194 /DB_XREF=UI-R-CN1-cjp-j-02-0-UI.s1 /CLONE=UI-R-CN1-cjp-j-02-0-UI /FEA=EST /CNT=3 /TID=Rn.72013.1 /TIER=ConsEnd /STK=2 /UG=Rn.72013 /UG_TITLE=ESTs BM390141 Integrin alpha 9 Itga9 685004 XM_001061864 /// XM_002727107 1380237_at AW253745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253745 /DB_XREF=gi:6597336 /DB_XREF=UI-R-BJ0-aes-h-02-0-UI.s1 /CLONE=UI-R-BJ0-aes-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.44752.1 /TIER=ConsEnd /STK=2 /UG=Rn.44752 /UG_TITLE=ESTs AW253745 adenosylhomocysteinase-like 2 Ahcyl2 312192 NM_001173510 /// XM_001062287 /// XM_231564 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004013 // adenosylhomocysteinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1380238_at BE117357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117357 /DB_XREF=gi:8509462 /DB_XREF=UI-R-BS1-ayn-h-01-0-UI.s1 /CLONE=UI-R-BS1-ayn-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.48876.1 /TIER=ConsEnd /STK=2 /UG=Rn.48876 /UG_TITLE=ESTs BE117357 1380239_at BE106083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106083 /DB_XREF=gi:8498185 /DB_XREF=UI-R-BO1-ask-g-01-0-UI.s1 /CLONE=UI-R-BO1-ask-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.49015.1 /TIER=ConsEnd /STK=2 /UG=Rn.49015 /UG_TITLE=ESTs BE106083 1380240_at AI102962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102962 /DB_XREF=gi:3707594 /DB_XREF=EST212251 /CLONE=REMBV49 /FEA=EST /CNT=3 /TID=Rn.55401.1 /TIER=ConsEnd /STK=2 /UG=Rn.55401 /UG_TITLE=ESTs AI102962 Bone morphogenetic protein 1 Bmp1 83470 NM_031323 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0061036 // positive regulation of cartilage development // not recorded /// 0061036 // positive regulation of cartilage development // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0031988 // membrane-bounded vesicle // inferred from direct assay 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1380241_a_at AW435376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435376 /DB_XREF=gi:6966683 /DB_XREF=UI-R-BJ0p-afc-g-07-0-UI.s1 /CLONE=UI-R-BJ0p-afc-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.12698.1 /TIER=ConsEnd /STK=2 /UG=Rn.12698 /UG_TITLE=ESTs, Weakly similar to low density lipoprotein receptor-related protein 6; low density lipoprotein-related protein 6 (Mus musculus) (M.musculus) AW435376 low density lipoprotein receptor-related protein 5 Lrp5 293649 NM_001106321 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // not recorded /// 0001944 // vasculature development // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0042074 // cell migration involved in gastrulation // inferred from electronic annotation /// 0042074 // cell migration involved in gastrulation // not recorded /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0048514 // blood vessel morphogenesis // not recorded /// 0060033 // anatomical structure regression // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060828 // regulation of canonical Wnt receptor signaling pathway // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1380242_at AW435376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435376 /DB_XREF=gi:6966683 /DB_XREF=UI-R-BJ0p-afc-g-07-0-UI.s1 /CLONE=UI-R-BJ0p-afc-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.12698.1 /TIER=ConsEnd /STK=2 /UG=Rn.12698 /UG_TITLE=ESTs, Weakly similar to low density lipoprotein receptor-related protein 6; low density lipoprotein-related protein 6 (Mus musculus) (M.musculus) AW435376 low density lipoprotein receptor-related protein 5 Lrp5 293649 NM_001106321 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // not recorded /// 0001944 // vasculature development // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0042074 // cell migration involved in gastrulation // inferred from electronic annotation /// 0042074 // cell migration involved in gastrulation // not recorded /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0048514 // blood vessel morphogenesis // not recorded /// 0060033 // anatomical structure regression // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060828 // regulation of canonical Wnt receptor signaling pathway // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1380243_at BE098614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098614 /DB_XREF=gi:8490478 /DB_XREF=UI-R-BJ1-asx-h-06-0-UI.s1 /CLONE=UI-R-BJ1-asx-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.23932.1 /TIER=ConsEnd /STK=2 /UG=Rn.23932 /UG_TITLE=ESTs BE098614 similar to CG14803-PA RGD1304693 313108 NM_001135780 0005515 // protein binding // not recorded 1380244_at AA850201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850201 /DB_XREF=gi:2937741 /DB_XREF=EST192968 /CLONE=ROVAD82 /FEA=EST /CNT=3 /TID=Rn.25278.1 /TIER=ConsEnd /STK=2 /UG=Rn.25278 /UG_TITLE=ESTs AA850201 Junctional adhesion molecule 2 Jam2 619374 NM_001034004 0005886 // plasma membrane // not recorded 1380245_at AI411847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411847 /DB_XREF=gi:4255351 /DB_XREF=EST240141 /CLONE=RKIEV59 /FEA=EST /CNT=3 /TID=Rn.43641.1 /TIER=ConsEnd /STK=2 /UG=Rn.43641 /UG_TITLE=ESTs AI411847 1380246_at AI548945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548945 /DB_XREF=gi:4466433 /DB_XREF=UI-R-C3-tw-d-07-0-UI.s1 /CLONE=UI-R-C3-tw-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.43949.1 /TIER=ConsEnd /STK=2 /UG=Rn.43949 /UG_TITLE=ESTs AI548945 1380247_at BM385840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385840 /DB_XREF=gi:18185893 /DB_XREF=UI-R-DM1-cke-k-12-0-UI.s1 /CLONE=UI-R-DM1-cke-k-12-0-UI /FEA=EST /CNT=3 /TID=Rn.79081.1 /TIER=ConsEnd /STK=2 /UG=Rn.79081 /UG_TITLE=ESTs BM385840 1380248_at AA819138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819138 /DB_XREF=gi:4227800 /DB_XREF=UI-R-A0-ba-c-06-0-UI.s1 /CLONE=UI-R-A0-ba-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.1645.1 /TIER=ConsEnd /STK=2 /UG=Rn.1645 /UG_TITLE=ESTs AA819138 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G Sema4g 361764 NM_001108526 0007275 // multicellular organismal development // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1380249_at AA848842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848842 /DB_XREF=gi:2936382 /DB_XREF=EST191603 /CLONE=RLUAH07 /FEA=EST /CNT=3 /TID=Rn.22343.1 /TIER=ConsEnd /STK=2 /UG=Rn.22343 /UG_TITLE=ESTs AA848842 1380250_at AI013978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013978 /DB_XREF=gi:4133742 /DB_XREF=EST207533 /CLONE=RSPBC50 /FEA=EST /CNT=3 /TID=Rn.23447.1 /TIER=ConsEnd /STK=2 /UG=Rn.23447 /UG_TITLE=ESTs AI013978 sushi, nidogen and EGF-like domains 1 Sned1 316638 NM_001167842 0007160 // cell-matrix adhesion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1380251_at BM386280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386280 /DB_XREF=gi:18186333 /DB_XREF=UI-R-CN1-cjf-b-17-0-UI.s1 /CLONE=UI-R-CN1-cjf-b-17-0-UI /FEA=EST /CNT=3 /TID=Rn.27012.1 /TIER=ConsEnd /STK=2 /UG=Rn.27012 /UG_TITLE=ESTs BM386280 1380252_at AW527866 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527866 /DB_XREF=gi:7170280 /DB_XREF=UI-R-BT1-akb-a-11-0-UI.s1 /CLONE=UI-R-BT1-akb-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.46135.1 /TIER=ConsEnd /STK=2 /UG=Rn.46135 /UG_TITLE=ESTs AW527866 proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 Psmd11 303353 NM_001107027 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1380253_at BE102139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102139 /DB_XREF=gi:8494238 /DB_XREF=UI-R-BT1-aqj-g-10-0-UI.s1 /CLONE=UI-R-BT1-aqj-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.50212.1 /TIER=ConsEnd /STK=2 /UG=Rn.50212 /UG_TITLE=ESTs BE102139 1380254_at AA893529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893529 /DB_XREF=gi:3020408 /DB_XREF=EST197332 /CLONE=RLIAD57 /FEA=EST /CNT=3 /TID=Rn.1571.1 /TIER=ConsEnd /STK=2 /UG=Rn.1571 /UG_TITLE=ESTs, Moderately similar to TF3A_HUMAN TRANSCRIPTION FACTOR IIIA (H.sapiens) AA893529 1380255_at AI235931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235931 /DB_XREF=gi:3829437 /DB_XREF=EST232493 /CLONE=ROVCY78 /FEA=EST /CNT=3 /TID=Rn.25371.1 /TIER=ConsEnd /STK=2 /UG=Rn.25371 /UG_TITLE=ESTs AI235931 1380256_at BE103946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103946 /DB_XREF=gi:8496046 /DB_XREF=UI-R-BX0-arj-g-07-0-UI.s1 /CLONE=UI-R-BX0-arj-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.35251.1 /TIER=ConsEnd /STK=2 /UG=Rn.35251 /UG_TITLE=ESTs BE103946 polymerase (RNA) III (DNA directed) polypeptide C Polr3c 310685 NM_001012081 0006350 // transcription // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0032728 // positive regulation of interferon-beta production // not recorded /// 0032728 // positive regulation of interferon-beta production // inferred from sequence or structural similarity /// 0032728 // positive regulation of interferon-beta production // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation /// 0045089 // positive regulation of innate immune response // not recorded /// 0045089 // positive regulation of innate immune response // inferred from sequence or structural similarity /// 0045089 // positive regulation of innate immune response // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation 1380257_at BF419367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419367 /DB_XREF=gi:11407356 /DB_XREF=UI-R-BJ2-bqq-g-05-0-UI.s1 /CLONE=UI-R-BJ2-bqq-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.40881.1 /TIER=ConsEnd /STK=2 /UG=Rn.40881 /UG_TITLE=ESTs, Weakly similar to T15650 hypothetical protein C27A2.1 - Caenorhabditis elegans (C.elegans) BF419367 structural maintenance of chromosomes 5 Smc5 293967 NM_001106357 0005694 // chromosome // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation 1380258_at AI576778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576778 /DB_XREF=gi:4561154 /DB_XREF=UI-R-Y0-vl-f-01-0-UI.s1 /CLONE=UI-R-Y0-vl-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.44905.1 /TIER=ConsEnd /STK=2 /UG=Rn.44905 /UG_TITLE=ESTs AI576778 1380259_at AI535549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535549 /DB_XREF=gi:4449684 /DB_XREF=UI-R-C3-ta-d-12-0-UI.s1 /CLONE=UI-R-C3-ta-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.72531.1 /TIER=ConsEnd /STK=2 /UG=Rn.72531 /UG_TITLE=ESTs AI535549 similar to RIKEN cDNA 2410017P07 RGD1311358 294519 NM_001017448 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 1380260_at BM387765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387765 /DB_XREF=gi:18187818 /DB_XREF=UI-R-CN1-cjk-c-20-0-UI.s1 /CLONE=UI-R-CN1-cjk-c-20-0-UI /FEA=EST /CNT=3 /TID=Rn.12744.1 /TIER=ConsEnd /STK=2 /UG=Rn.12744 /UG_TITLE=ESTs BM387765 BARX homeobox 1 Barx1 364680 NM_001108880 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0009888 // tissue development // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030855 // epithelial cell differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048513 // organ development // not recorded /// 0048536 // spleen development // not recorded /// 0048856 // anatomical structure development // not recorded /// 0055123 // digestive system development // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1380261_at BE328914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE328914 /DB_XREF=gi:9202690 /DB_XREF=hq32a11.x1 /CLONE=IMAGE:3121052 /FEA=EST /CNT=3 /TID=Rn.20672.1 /TIER=ConsEnd /STK=2 /UG=Rn.20672 /UG_TITLE=ESTs BE328914 Similar to RIKEN cDNA 4933404M02 LOC499806 499806 NM_001024311 1380262_at AA893436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893436 /DB_XREF=gi:4132289 /DB_XREF=EST197239 /CLONE=RLIAB44 /FEA=EST /CNT=3 /TID=Rn.3685.1 /TIER=ConsEnd /STK=2 /UG=Rn.3685 /UG_TITLE=ESTs AA893436 serum/glucocorticoid regulated kinase 2 Sgk2 171497 NM_134463 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015459 // potassium channel regulator activity // not recorded /// 0015459 // potassium channel regulator activity // inferred from sequence or structural similarity /// 0015459 // potassium channel regulator activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1380263_at BI290769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290769 /DB_XREF=gi:14949654 /DB_XREF=UI-R-DK0-cga-b-10-0-UI.s1 /CLONE=UI-R-DK0-cga-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.69537.1 /TIER=ConsEnd /STK=2 /UG=Rn.69537 /UG_TITLE=ESTs BI290769 family with sequence similarity 193, member A Fam193a 305452 XM_002724985 /// XM_223536 1380264_at BF399532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399532 /DB_XREF=gi:11384540 /DB_XREF=UI-R-CA1-bjb-j-22-0-UI.s1 /CLONE=UI-R-CA1-bjb-j-22-0-UI /FEA=EST /CNT=3 /TID=Rn.52191.1 /TIER=ConsEnd /STK=2 /UG=Rn.52191 /UG_TITLE=ESTs BF399532 1380265_at BI294596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294596 /DB_XREF=gi:14957202 /DB_XREF=UI-R-DK0-cem-b-12-0-UI.s1 /CLONE=UI-R-DK0-cem-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.18361.1 /TIER=ConsEnd /STK=2 /UG=Rn.18361 /UG_TITLE=ESTs, Moderately similar to SNC1_HUMAN SNRNA ACTIVATING PROTEIN COMPLEX 43 KDA SUBUNIT (H.sapiens) BI294596 small nuclear RNA activating complex, polypeptide 1 Snapc1 314228 NM_001108033 1380266_at BG376326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376326 /DB_XREF=gi:13300798 /DB_XREF=UI-R-CT0-buo-b-11-0-UI.s1 /CLONE=UI-R-CT0-buo-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.44878.1 /TIER=ConsEnd /STK=2 /UG=Rn.44878 /UG_TITLE=ESTs BG376326 tubulin tyrosine ligase-like family, member 11 Ttll11 689746 XM_001071863 /// XM_002726084 0006464 // protein modification process // inferred from electronic annotation 0004835 // tubulin-tyrosine ligase activity // inferred from electronic annotation 1380267_at AI029135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029135 /DB_XREF=gi:4296463 /DB_XREF=UI-R-C0-ip-e-11-0-UI.s1 /CLONE=UI-R-C0-ip-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.11745.1 /TIER=ConsEnd /STK=2 /UG=Rn.11745 /UG_TITLE=ESTs, Weakly similar to Sea urchin tektin A1 ; trans-acting transcriptional factor (Caenorhabditis elegans) (C.elegans) AI029135 tektin 3 Tekt3 287392 NM_001024739 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005874 // microtubule // inferred from electronic annotation 1380268_at AA956352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956352 /DB_XREF=gi:4238783 /DB_XREF=UI-R-E1-fj-d-03-0-UI.s1 /CLONE=UI-R-E1-fj-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.19998.3 /TIER=ConsEnd /STK=2 /UG=Rn.19998 /UG_TITLE=ESTs AA956352 1380269_at AA859619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859619 /DB_XREF=gi:4230165 /DB_XREF=UI-R-E0-bs-g-07-0-UI.s1 /CLONE=UI-R-E0-bs-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.43714.1 /TIER=ConsEnd /STK=2 /UG=Rn.43714 /UG_TITLE=ESTs, Weakly similar to RNA binding protein (R.norvegicus) AA859619 FUS interacting protein (serine-arginine rich) 1 Fusip1 362630 NM_001025738 0000375 // RNA splicing, via transesterification reactions // inferred from electronic annotation /// 0016482 // cytoplasmic transport // inferred from electronic annotation /// 0048025 // negative regulation of nuclear mRNA splicing, via spliceosome // inferred from electronic annotation 0005654 // nucleoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1380270_at BF417890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417890 /DB_XREF=gi:11405879 /DB_XREF=UI-R-CA1-blu-e-05-0-UI.s1 /CLONE=UI-R-CA1-blu-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.63276.1 /TIER=ConsEnd /STK=2 /UG=Rn.63276 /UG_TITLE=ESTs BF417890 antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 Mfi2 288038 NM_001105872 0006826 // iron ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008199 // ferric iron binding // inferred from electronic annotation 1380271_at AI070975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070975 /DB_XREF=gi:3397226 /DB_XREF=UI-R-C2-na-e-07-0-UI.s1 /CLONE=UI-R-C2-na-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.9266.1 /TIER=ConsEnd /STK=2 /UG=Rn.9266 /UG_TITLE=ESTs AI070975 guanine nucleotide binding protein (G protein), beta polypeptide 1-like Gnb1l 680266 XM_001057185 /// XM_002724760 0035176 // social behavior // not recorded 1380272_at BF286509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF286509 /DB_XREF=gi:11217579 /DB_XREF=EST451100 /CLONE=RGIFQ68 /FEA=EST /CNT=3 /TID=Rn.43653.1 /TIER=ConsEnd /STK=2 /UG=Rn.43653 /UG_TITLE=ESTs BF286509 1380273_at AA944386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944386 /DB_XREF=gi:3104302 /DB_XREF=EST199885 /CLONE=REMAG35 /FEA=EST /CNT=3 /TID=Rn.22992.1 /TIER=ConsEnd /STK=2 /UG=Rn.22992 /UG_TITLE=ESTs AA944386 1380274_at AI103974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103974 /DB_XREF=gi:3708434 /DB_XREF=EST213263 /CLONE=RHEBV77 /FEA=EST /CNT=3 /TID=Rn.45670.1 /TIER=ConsEnd /STK=2 /UG=Rn.45670 /UG_TITLE=ESTs, Highly similar to SEPIAPTERIN REDUCTASE (R.norvegicus) AI103974 sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) Spr 29270 NM_019181 0006558 // L-phenylalanine metabolic process // not recorded /// 0006729 // tetrahydrobiopterin biosynthetic process // inferred from mutant phenotype /// 0006729 // tetrahydrobiopterin biosynthetic process // traceable author statement /// 0006729 // tetrahydrobiopterin biosynthetic process // inferred from electronic annotation /// 0006809 // nitric oxide biosynthetic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from mutant phenotype /// 0016265 // death // not recorded /// 0019889 // pteridine metabolic process // not recorded /// 0040014 // regulation of multicellular organism growth // not recorded /// 0042415 // norepinephrine metabolic process // not recorded /// 0042417 // dopamine metabolic process // not recorded /// 0042428 // serotonin metabolic process // not recorded /// 0046146 // tetrahydrobiopterin metabolic process // not recorded /// 0048667 // cell morphogenesis involved in neuron differentiation // not recorded /// 0050882 // voluntary musculoskeletal movement // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004757 // sepiapterin reductase activity // inferred from direct assay /// 0004757 // sepiapterin reductase activity // inferred from mutant phenotype /// 0004757 // sepiapterin reductase activity // traceable author statement /// 0004757 // sepiapterin reductase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1380275_at AW534344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534344 /DB_XREF=gi:7176758 /DB_XREF=UI-R-C4-alo-d-01-0-UI.s1 /CLONE=UI-R-C4-alo-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.49217.1 /TIER=ConsEnd /STK=2 /UG=Rn.49217 /UG_TITLE=ESTs AW534344 family with sequence similarity 69, member B Fam69b 362090 NM_001014178 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1380276_at AA963631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963631 /DB_XREF=gi:4278534 /DB_XREF=UI-R-E1-fy-g-01-0-UI.s2 /CLONE=UI-R-E1-fy-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.23205.1 /TIER=ConsEnd /STK=2 /UG=Rn.23205 /UG_TITLE=ESTs AA963631 1380277_at AI639142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639142 /DB_XREF=gi:4700176 /DB_XREF=rx05123s /CLONE=rx05123 /FEA=EST /CNT=3 /TID=Rn.42022.1 /TIER=ConsEnd /STK=2 /UG=Rn.42022 /UG_TITLE=ESTs AI639142 RAD51 associated protein 1 Rad51ap1 689055 NM_001079711 0006310 // DNA recombination // inferred from electronic annotation /// 0006310 // DNA recombination // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // not recorded /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1380278_at AI169671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169671 /DB_XREF=gi:3709711 /DB_XREF=EST215563 /CLONE=RLIAQ03 /FEA=EST /CNT=3 /TID=Rn.22785.1 /TIER=ConsEnd /STK=2 /UG=Rn.22785 /UG_TITLE=ESTs AI169671 1380279_at BE101452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101452 /DB_XREF=gi:8493367 /DB_XREF=UI-R-BJ1-auj-b-08-0-UI.s1 /CLONE=UI-R-BJ1-auj-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.52099.1 /TIER=ConsEnd /STK=2 /UG=Rn.52099 /UG_TITLE=ESTs BE101452 Prolylcarboxypeptidase (angiotensinase C) Prcp 293118 NM_001106281 0006508 // proteolysis // inferred from electronic annotation 0008236 // serine-type peptidase activity // inferred from electronic annotation 1380280_at BE118420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118420 /DB_XREF=gi:8510525 /DB_XREF=UI-R-BJ1-azp-d-07-0-UI.s1 /CLONE=UI-R-BJ1-azp-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.42781.1 /TIER=ConsEnd /STK=2 /UG=Rn.42781 /UG_TITLE=ESTs BE118420 1380281_at BF402103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402103 /DB_XREF=gi:11390119 /DB_XREF=UI-R-CA0-bhw-f-01-0-UI.s1 /CLONE=UI-R-CA0-bhw-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.71084.1 /TIER=ConsEnd /STK=2 /UG=Rn.71084 /UG_TITLE=ESTs, Weakly similar to T33672 hypothetical protein T24C4.6 - Caenorhabditis elegans (C.elegans) BF402103 zyg-11 homolog B (C. elegans) Zyg11b 362559 XM_001060075 /// XM_342878 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1380282_at BF390568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390568 /DB_XREF=gi:11375414 /DB_XREF=UI-R-CA1-bcc-f-01-0-UI.s1 /CLONE=UI-R-CA1-bcc-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.64127.1 /TIER=ConsEnd /STK=2 /UG=Rn.64127 /UG_TITLE=ESTs BF390568 c-Maf-inducing protein Cmip 292051 NM_001163273 1380283_at BF411100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411100 /DB_XREF=gi:11399075 /DB_XREF=UI-R-CN0-bmg-g-09-0-UI.s1 /CLONE=UI-R-CN0-bmg-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.23119.1 /TIER=ConsEnd /STK=2 /UG=Rn.23119 /UG_TITLE=ESTs BF411100 teashirt zinc finger homeobox 1 Tshz1 307217 XM_001060440 /// XM_225688 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0042474 // middle ear morphogenesis // not recorded /// 0060023 // soft palate development // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1380284_at AI011618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011618 /DB_XREF=gi:4133464 /DB_XREF=EST206069 /CLONE=ROVAX39 /FEA=EST /CNT=3 /TID=Rn.30638.1 /TIER=ConsEnd /STK=2 /UG=Rn.30638 /UG_TITLE=ESTs AI011618 1380285_at AI171200 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171200 /DB_XREF=gi:3711240 /DB_XREF=EST217154 /CLONE=RMUBH49 /FEA=EST /CNT=3 /TID=Rn.29459.1 /TIER=ConsEnd /STK=2 /UG=Rn.29459 /UG_TITLE=ESTs AI171200 chordin Chrd 117275 NM_057134 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001649 // osteoblast differentiation // not recorded /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // not recorded /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0001707 // mesoderm formation // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0021919 // BMP signaling pathway involved in spinal cord dorsal/ventral patterning // inferred from electronic annotation /// 0021919 // BMP signaling pathway involved in spinal cord dorsal/ventral patterning // not recorded /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // not recorded /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0045668 // negative regulation of osteoblast differentiation // inferred from electronic annotation /// 0045668 // negative regulation of osteoblast differentiation // not recorded /// 0045785 // positive regulation of cell adhesion // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded /// 0045545 // syndecan binding // inferred from electronic annotation /// 0045545 // syndecan binding // not recorded 1380286_x_at BM386844 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386844 /DB_XREF=gi:18186897 /DB_XREF=UI-R-CN1-cjh-m-12-0-UI.s1 /CLONE=UI-R-CN1-cjh-m-12-0-UI /FEA=EST /CNT=3 /TID=Rn.36574.2 /TIER=ConsEnd /STK=2 /UG=Rn.36574 /UG_TITLE=ESTs BM386844 similar to KIAA1731 protein RGD1311723 363018 XM_001069542 /// XM_343351 1380287_at BF396289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396289 /DB_XREF=gi:11381261 /DB_XREF=UI-R-BS2-bdw-d-10-0-UI.s1 /CLONE=UI-R-BS2-bdw-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.61130.1 /TIER=ConsEnd /STK=2 /UG=Rn.61130 /UG_TITLE=ESTs, Highly similar to I78877 cAMP responsive element binding protein (H.sapiens) BF396289 similar to cAMP responsive element binding protein 5 RGD1566107 500131 NM_001134621 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1380288_at BF286011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF286011 /DB_XREF=gi:11217081 /DB_XREF=EST450602 /CLONE=RGIFL60 /FEA=EST /CNT=3 /TID=Rn.28150.1 /TIER=ConsEnd /STK=2 /UG=Rn.28150 /UG_TITLE=ESTs BF286011 RGD1563821 RGD1563821 500984 XM_001066131 /// XM_580144 1380289_at AA799834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799834 /DB_XREF=gi:2862789 /DB_XREF=EST189331 /CLONE=RHEAF93 /FEA=EST /CNT=3 /TID=Rn.35202.1 /TIER=ConsEnd /STK=2 /UG=Rn.35202 /UG_TITLE=ESTs, Weakly similar to RENAL TRANSCRIPTION FACTOR KID-1 (R.norvegicus) AA799834 similar to Zinc finger protein 84 (Zinc finger protein HPF2) LOC691468 691468 XM_001078417 /// XM_002724499 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1380290_at AI013768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013768 /DB_XREF=gi:4133909 /DB_XREF=EST208443 /CLONE=RSPBS59 /FEA=EST /CNT=3 /TID=Rn.64791.1 /TIER=ConsEnd /STK=2 /UG=Rn.64791 /UG_TITLE=ESTs AI013768 1380291_at BM384766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384766 /DB_XREF=gi:18184819 /DB_XREF=UI-R-CN1-cjl-p-15-0-UI.s2 /CLONE=UI-R-CN1-cjl-p-15-0-UI /FEA=EST /CNT=3 /TID=Rn.20441.2 /TIER=ConsEnd /STK=2 /UG=Rn.20441 /UG_TITLE=ESTs BM384766 RGD1564972 RGD1564972 499666 XM_001055530 /// XM_002729076 1380292_at AI556943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556943 /DB_XREF=gi:4489306 /DB_XREF=UI-R-C2p-rp-g-07-0-UI.s1 /CLONE=UI-R-C2p-rp-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.6465.1 /TIER=ConsEnd /STK=2 /UG=Rn.6465 /UG_TITLE=ESTs AI556943 1380293_at BF412754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412754 /DB_XREF=gi:11400743 /DB_XREF=UI-R-BT1-bnt-h-09-0-UI.s1 /CLONE=UI-R-BT1-bnt-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.6657.2 /TIER=ConsEnd /STK=2 /UG=Rn.6657 /UG_TITLE=ESTs BF412754 similar to chromosome 18 open reading frame 54 LOC361346 361346 NM_001017462 0005576 // extracellular region // inferred from electronic annotation 1380294_at AA859714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859714 /DB_XREF=gi:4230258 /DB_XREF=UI-R-E0-bx-h-01-0-UI.s1 /CLONE=UI-R-E0-bx-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.43074.1 /TIER=ConsEnd /STK=2 /UG=Rn.43074 /UG_TITLE=ESTs AA859714 1380295_at BF389710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389710 /DB_XREF=gi:11374545 /DB_XREF=UI-R-BS2-bdn-h-06-0-UI.s1 /CLONE=UI-R-BS2-bdn-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.56993.1 /TIER=ConsEnd /STK=2 /UG=Rn.56993 /UG_TITLE=ESTs BF389710 1380296_at AI406334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406334 /DB_XREF=gi:4249838 /DB_XREF=EST234620 /CLONE=RBRDM41 /FEA=EST /CNT=3 /TID=Rn.64770.1 /TIER=ConsEnd /STK=2 /UG=Rn.64770 /UG_TITLE=ESTs AI406334 1380297_at AW915533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915533 /DB_XREF=gi:8081231 /DB_XREF=EST346837 /CLONE=RGICW46 /FEA=EST /CNT=3 /TID=Rn.44160.1 /TIER=ConsEnd /STK=2 /UG=Rn.44160 /UG_TITLE=ESTs AW915533 1380298_at AW435308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435308 /DB_XREF=gi:6966615 /DB_XREF=UI-R-BJ0p-afc-a-07-0-UI.s1 /CLONE=UI-R-BJ0p-afc-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.48106.1 /TIER=ConsEnd /STK=2 /UG=Rn.48106 /UG_TITLE=ESTs AW435308 1380299_at BF411579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411579 /DB_XREF=gi:11399568 /DB_XREF=UI-R-BT1-bmt-h-01-0-UI.s1 /CLONE=UI-R-BT1-bmt-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.46853.1 /TIER=ConsEnd /STK=2 /UG=Rn.46853 /UG_TITLE=ESTs BF411579 1380300_at AA957614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957614 /DB_XREF=gi:4277504 /DB_XREF=UI-R-E1-gb-c-11-0-UI.s1 /CLONE=UI-R-E1-gb-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.40258.1 /TIER=ConsEnd /STK=2 /UG=Rn.40258 /UG_TITLE=ESTs AA957614 1380301_at BM385833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385833 /DB_XREF=gi:18185886 /DB_XREF=UI-R-DM1-cke-i-12-0-UI.s1 /CLONE=UI-R-DM1-cke-i-12-0-UI /FEA=EST /CNT=3 /TID=Rn.81661.1 /TIER=ConsEnd /STK=2 /UG=Rn.81661 /UG_TITLE=ESTs BM385833 1380302_at BE121073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121073 /DB_XREF=gi:8513178 /DB_XREF=UI-R-CA0-bar-g-05-0-UI.s1 /CLONE=UI-R-CA0-bar-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.53866.1 /TIER=ConsEnd /STK=2 /UG=Rn.53866 /UG_TITLE=ESTs BE121073 1380303_at BF398611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398611 /DB_XREF=gi:11383606 /DB_XREF=UI-R-BS2-beq-h-01-0-UI.s1 /CLONE=UI-R-BS2-beq-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.63248.1 /TIER=ConsEnd /STK=2 /UG=Rn.63248 /UG_TITLE=ESTs BF398611 1380304_at BI289361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289361 /DB_XREF=gi:14946844 /DB_XREF=UI-R-DK0-cfg-a-08-0-UI.s1 /CLONE=UI-R-DK0-cfg-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.72353.1 /TIER=ConsEnd /STK=2 /UG=Rn.72353 /UG_TITLE=ESTs, Weakly similar to FXK1 MOUSE FORKHEAD BOX PROTEIN K1 (M.musculus) BI289361 forkhead box K1 Foxk1 304298 NM_001037219 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1380305_at BE106776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106776 /DB_XREF=gi:8498878 /DB_XREF=UI-R-BT1-ast-a-08-0-UI.s1 /CLONE=UI-R-BT1-ast-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.51041.1 /TIER=ConsEnd /STK=2 /UG=Rn.51041 /UG_TITLE=ESTs BE106776 NOD3-like protein nod3l 501101 NM_001024360 1380306_at AW435415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435415 /DB_XREF=gi:6966722 /DB_XREF=UI-R-BJ0p-afu-c-02-0-UI.s1 /CLONE=UI-R-BJ0p-afu-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.54177.1 /TIER=ConsEnd /STK=2 /UG=Rn.54177 /UG_TITLE=ESTs AW435415 1380307_at AI556551 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556551 /DB_XREF=gi:4488914 /DB_XREF=UI-R-C2p-rm-c-02-0-UI.s1 /CLONE=UI-R-C2p-rm-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.24465.1 /TIER=ConsEnd /STK=2 /UG=Rn.24465 /UG_TITLE=ESTs AI556551 1380308_at AI072778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072778 /DB_XREF=gi:3398972 /DB_XREF=UI-R-Y0-md-h-06-0-UI.s1 /CLONE=UI-R-Y0-md-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.20260.1 /TIER=ConsEnd /STK=2 /UG=Rn.20260 /UG_TITLE=ESTs AI072778 1380309_at BI273829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI273829 /DB_XREF=gi:14884163 /DB_XREF=UI-R-CW0-bvz-d-12-0-UI.s1 /CLONE=UI-R-CW0-bvz-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.27856.1 /TIER=ConsEnd /STK=2 /UG=Rn.27856 /UG_TITLE=ESTs BI273829 vacuolar protein sorting 8 homolog (S. cerevisiae) Vps8 287990 XM_001058757 /// XM_221315 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380310_at AI059937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059937 /DB_XREF=gi:3333714 /DB_XREF=UI-R-C1-kr-g-02-0-UI.s1 /CLONE=UI-R-C1-kr-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.19319.1 /TIER=ConsEnd /STK=2 /UG=Rn.19319 /UG_TITLE=ESTs AI059937 1380311_at AI535528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535528 /DB_XREF=gi:4449663 /DB_XREF=UI-R-C3-sq-h-12-0-UI.s1 /CLONE=UI-R-C3-sq-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.34848.1 /TIER=ConsEnd /STK=2 /UG=Rn.34848 /UG_TITLE=ESTs AI535528 1380312_at AA900436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900436 /DB_XREF=gi:4232928 /DB_XREF=UI-R-E0-dl-h-05-0-UI.s1 /CLONE=UI-R-E0-dl-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.15061.1 /TIER=ConsEnd /STK=2 /UG=Rn.15061 /UG_TITLE=ESTs AA900436 1380313_at AA848998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848998 /DB_XREF=gi:4131693 /DB_XREF=EST191760 /CLONE=RLUAI84 /FEA=EST /CNT=3 /TID=Rn.16199.1 /TIER=ConsEnd /STK=2 /UG=Rn.16199 /UG_TITLE=ESTs, Weakly similar to CD94_HUMAN NATURAL KILLER CELLS ANTIGEN CD94 (H.sapiens) AA848998 killer cell lectin-like receptor, family E, member 1 Klre1 297645 NM_181372 0002223 // stimulatory C-type lectin receptor signaling pathway // not recorded /// 0002223 // stimulatory C-type lectin receptor signaling pathway // inferred from electronic annotation /// 0002859 // negative regulation of natural killer cell mediated cytotoxicity directed against tumor cell target // inferred from direct assay /// 0007165 // signal transduction // not recorded /// 0030101 // natural killer cell activation // not recorded /// 0030101 // natural killer cell activation // inferred from electronic annotation /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0032729 // positive regulation of interferon-gamma production // inferred from electronic annotation /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // not recorded /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // inferred from electronic annotation 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // not recorded /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0045233 // natural killer cell receptor activity // inferred from direct assay /// 0046983 // protein dimerization activity // not recorded /// 0046983 // protein dimerization activity // inferred from electronic annotation 1380314_at BI290787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290787 /DB_XREF=gi:14949692 /DB_XREF=UI-R-DK0-cga-d-05-0-UI.s1 /CLONE=UI-R-DK0-cga-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.76384.1 /TIER=ConsEnd /STK=2 /UG=Rn.76384 /UG_TITLE=ESTs BI290787 1380315_at BF409953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409953 /DB_XREF=gi:11397928 /DB_XREF=UI-R-CA1-bjy-g-04-0-UI.s1 /CLONE=UI-R-CA1-bjy-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.39401.1 /TIER=ConsEnd /STK=2 /UG=Rn.39401 /UG_TITLE=ESTs BF409953 1380316_at AW527726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527726 /DB_XREF=gi:7170140 /DB_XREF=UI-R-BT1-ajy-e-03-0-UI.s1 /CLONE=UI-R-BT1-ajy-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.44971.1 /TIER=ConsEnd /STK=2 /UG=Rn.44971 /UG_TITLE=ESTs AW527726 malonyl CoA:ACP acyltransferase (mitochondrial) Mcat 315173 NM_001191788 /// XM_001077904 /// XM_235527 0006633 // fatty acid biosynthetic process // not recorded /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004314 // [acyl-carrier-protein] S-malonyltransferase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016740 // transferase activity // not recorded 1380317_at BF402765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402765 /DB_XREF=gi:11390740 /DB_XREF=UI-R-CA0-bhk-d-09-0-UI.s1 /CLONE=UI-R-CA0-bhk-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.47164.1 /TIER=ConsEnd /STK=2 /UG=Rn.47164 /UG_TITLE=ESTs BF402765 cadherin 10 Cdh10 29181 NM_001168631 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // traceable author statement 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1380318_at BF401102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401102 /DB_XREF=gi:11389077 /DB_XREF=UI-R-CA0-bgh-f-07-0-UI.s1 /CLONE=UI-R-CA0-bgh-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.59718.1 /TIER=ConsEnd /STK=2 /UG=Rn.59718 /UG_TITLE=ESTs BF401102 1380319_at BI296604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296604 /DB_XREF=gi:14961194 /DB_XREF=UI-R-CV2-cgt-b-09-0-UI.s1 /CLONE=UI-R-CV2-cgt-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.47459.1 /TIER=ConsEnd /STK=2 /UG=Rn.47459 /UG_TITLE=ESTs BI296604 inversin Invs 313228 NM_001107932 0001822 // kidney development // not recorded /// 0009791 // post-embryonic development // not recorded /// 0031016 // pancreas development // not recorded /// 0048513 // organ development // not recorded /// 0060971 // embryonic heart tube left/right pattern formation // not recorded 1380320_at AI176284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176284 /DB_XREF=gi:3726922 /DB_XREF=EST219866 /CLONE=ROVBP55 /FEA=EST /CNT=3 /TID=Rn.24111.1 /TIER=ConsEnd /STK=2 /UG=Rn.24111 /UG_TITLE=ESTs AI176284 lin-54 homolog (C. elegans) Lin54 305171 NM_001100564 0006350 // transcription // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1380321_at BI287786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287786 /DB_XREF=gi:14943753 /DB_XREF=UI-R-CS0s-cbm-a-07-0-UI.s1 /CLONE=UI-R-CS0s-cbm-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.52451.1 /TIER=ConsEnd /STK=2 /UG=Rn.52451 /UG_TITLE=ESTs BI287786 mitochondrial tumor suppressor 1 Mtus1 306487 NM_178093 0007049 // cell cycle // inferred from electronic annotation /// 0071375 // cellular response to peptide hormone stimulus // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1380322_at AI502574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502574 /DB_XREF=gi:4400425 /DB_XREF=UI-R-C2-ni-f-06-0-UI.s1 /CLONE=UI-R-C2-ni-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.20182.1 /TIER=ConsEnd /STK=2 /UG=Rn.20182 /UG_TITLE=ESTs AI502574 1380323_at BE105023 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105023 /DB_XREF=gi:8497124 /DB_XREF=UI-R-BX0-asf-d-12-0-UI.s1 /CLONE=UI-R-BX0-asf-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.20789.1 /TIER=ConsEnd /STK=2 /UG=Rn.20789 /UG_TITLE=ESTs BE105023 1380324_at AW435332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435332 /DB_XREF=gi:6966639 /DB_XREF=UI-R-BJ0p-afc-c-08-0-UI.s1 /CLONE=UI-R-BJ0p-afc-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.21736.1 /TIER=ConsEnd /STK=2 /UG=Rn.21736 /UG_TITLE=ESTs AW435332 1380325_at BE115778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115778 /DB_XREF=gi:8507883 /DB_XREF=UI-R-CA0-axs-g-06-0-UI.s1 /CLONE=UI-R-CA0-axs-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.42034.1 /TIER=ConsEnd /STK=2 /UG=Rn.42034 /UG_TITLE=ESTs BE115778 1380326_at BF388747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388747 /DB_XREF=gi:11373571 /DB_XREF=UI-R-BS2-bde-a-12-0-UI.s1 /CLONE=UI-R-BS2-bde-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.45551.1 /TIER=ConsEnd /STK=2 /UG=Rn.45551 /UG_TITLE=ESTs BF388747 1380327_at AI408747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408747 /DB_XREF=gi:4252251 /DB_XREF=EST237038 /CLONE=ROVEG81 /FEA=EST /CNT=3 /TID=Rn.43813.1 /TIER=ConsEnd /STK=2 /UG=Rn.43813 /UG_TITLE=ESTs AI408747 helicase (DNA) B Helb 500837 XM_001081027 /// XM_576229 0006200 // ATP catabolic process // not recorded /// 0006260 // DNA replication // not recorded /// 0006261 // DNA-dependent DNA replication // not recorded /// 0006269 // DNA replication, synthesis of RNA primer // not recorded 0005658 // alpha DNA polymerase:primase complex // not recorded 0004003 // ATP-dependent DNA helicase activity // not recorded /// 0017116 // single-stranded DNA-dependent ATP-dependent DNA helicase activity // not recorded /// 0043141 // ATP-dependent 5'-3' DNA helicase activity // not recorded 1380328_at AW533453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533453 /DB_XREF=gi:7175867 /DB_XREF=UI-R-BU0-ani-b-01-0-UI.s1 /CLONE=UI-R-BU0-ani-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.46669.1 /TIER=ConsEnd /STK=2 /UG=Rn.46669 /UG_TITLE=ESTs AW533453 1380329_at AI717253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717253 /DB_XREF=gi:5034509 /DB_XREF=UI-R-Y0-acm-h-11-0-UI.s1 /CLONE=UI-R-Y0-acm-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.25053.1 /TIER=ConsEnd /STK=2 /UG=Rn.25053 /UG_TITLE=ESTs AI717253 oligodendrocytic myelin paranodal and inner loop protein Opalin 361757 NM_001017386 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 1380330_at BI288159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288159 /DB_XREF=gi:14944468 /DB_XREF=UI-R-DK0-cdc-f-03-0-UI.s1 /CLONE=UI-R-DK0-cdc-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.39318.1 /TIER=ConsEnd /STK=2 /UG=Rn.39318 /UG_TITLE=ESTs BI288159 1380331_at BE106340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106340 /DB_XREF=gi:8498442 /DB_XREF=UI-R-BO1-asm-h-01-0-UI.s1 /CLONE=UI-R-BO1-asm-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.49096.1 /TIER=ConsEnd /STK=2 /UG=Rn.49096 /UG_TITLE=ESTs BE106340 family with sequence similarity 181, member B Fam181b 499205 NM_001109150 1380332_at BF411794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411794 /DB_XREF=gi:11399783 /DB_XREF=UI-R-BT1-bmw-c-08-0-UI.s1 /CLONE=UI-R-BT1-bmw-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.64148.1 /TIER=ConsEnd /STK=2 /UG=Rn.64148 /UG_TITLE=ESTs BF411794 1380333_at AW915666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915666 /DB_XREF=gi:8081371 /DB_XREF=EST346970 /CLONE=RGICZ18 /FEA=EST /CNT=3 /TID=Rn.22891.1 /TIER=ConsEnd /STK=2 /UG=Rn.22891 /UG_TITLE=ESTs, Weakly similar to S48748 protein-tyrosine-phosphatase (R.norvegicus) AW915666 protein tyrosine phosphatase, non-receptor type 22 (lymphoid) Ptpn22 295338 NM_001106460 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030217 // T cell differentiation // not recorded /// 0050852 // T cell receptor signaling pathway // not recorded /// 0050860 // negative regulation of T cell receptor signaling pathway // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1380334_at AI555044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555044 /DB_XREF=gi:4487407 /DB_XREF=UI-R-C2p-qv-f-06-0-UI.s1 /CLONE=UI-R-C2p-qv-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.38803.1 /TIER=ConsEnd /STK=2 /UG=Rn.38803 /UG_TITLE=ESTs AI555044 RNA binding motif protein 47 Rbm47 305340 NM_001005882 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1380335_at AI070055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070055 /DB_XREF=gi:3396306 /DB_XREF=UI-R-C1-ln-g-10-0-UI.s1 /CLONE=UI-R-C1-ln-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.19638.1 /TIER=ConsEnd /STK=2 /UG=Rn.19638 /UG_TITLE=ESTs AI070055 1380336_at BI289330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289330 /DB_XREF=gi:14946783 /DB_XREF=UI-R-DK0-cfl-e-07-0-UI.s1 /CLONE=UI-R-DK0-cfl-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.72753.1 /TIER=ConsEnd /STK=2 /UG=Rn.72753 /UG_TITLE=ESTs BI289330 interleukin-1 receptor-associated kinase 3 Irak3 314870 NM_001108101 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0010933 // positive regulation of macrophage tolerance induction // inferred from electronic annotation /// 0010933 // positive regulation of macrophage tolerance induction // not recorded /// 0010936 // negative regulation of macrophage cytokine production // inferred from electronic annotation /// 0010936 // negative regulation of macrophage cytokine production // not recorded /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0032494 // response to peptidoglycan // inferred from electronic annotation /// 0032494 // response to peptidoglycan // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0032695 // negative regulation of interleukin-12 production // inferred from electronic annotation /// 0032695 // negative regulation of interleukin-12 production // not recorded /// 0032715 // negative regulation of interleukin-6 production // inferred from electronic annotation /// 0032715 // negative regulation of interleukin-6 production // not recorded /// 0032720 // negative regulation of tumor necrosis factor production // inferred from electronic annotation /// 0032720 // negative regulation of tumor necrosis factor production // not recorded /// 0034122 // negative regulation of toll-like receptor signaling pathway // inferred from electronic annotation /// 0034122 // negative regulation of toll-like receptor signaling pathway // not recorded /// 0042177 // negative regulation of protein catabolic process // inferred from electronic annotation /// 0042177 // negative regulation of protein catabolic process // not recorded /// 0043242 // negative regulation of protein complex disassembly // inferred from electronic annotation /// 0043242 // negative regulation of protein complex disassembly // not recorded /// 0043244 // regulation of protein complex disassembly // not recorded /// 0043244 // regulation of protein complex disassembly // inferred from electronic annotation /// 0043330 // response to exogenous dsRNA // inferred from electronic annotation /// 0043330 // response to exogenous dsRNA // not recorded /// 0043407 // negative regulation of MAP kinase activity // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // not recorded /// 0045824 // negative regulation of innate immune response // inferred from electronic annotation /// 0045824 // negative regulation of innate immune response // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0070498 // interleukin-1-mediated signaling pathway // inferred from electronic annotation /// 0070498 // interleukin-1-mediated signaling pathway // not recorded /// 0070555 // response to interleukin-1 // inferred from electronic annotation /// 0070555 // response to interleukin-1 // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000287 // magnesium ion binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1380337_at AI454857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454857 /DB_XREF=gi:4296658 /DB_XREF=UI-R-BT0-qk-g-08-0-UI.s1 /CLONE=UI-R-BT0-qk-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.35129.1 /TIER=ConsEnd /STK=2 /UG=Rn.35129 /UG_TITLE=ESTs AI454857 Hypothetical protein LOC688390 LOC688390 688390 NM_001109496 1380338_at BF562910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562910 /DB_XREF=gi:11672640 /DB_XREF=UI-R-BO0-aif-h-08-0-UI.r1 /CLONE=UI-R-BO0-aif-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.45634.1 /TIER=ConsEnd /STK=2 /UG=Rn.45634 /UG_TITLE=ESTs BF562910 1380339_at AW520369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520369 /DB_XREF=gi:7162747 /DB_XREF=UI-R-BJ0p-aex-g-06-0-UI.s1 /CLONE=UI-R-BJ0p-aex-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.44061.1 /TIER=ConsEnd /STK=2 /UG=Rn.44061 /UG_TITLE=ESTs, Weakly similar to T33157 hypothetical protein F56H1.5 - Caenorhabditis elegans (C.elegans) AW520369 ATP/GTP binding protein 1 Agtpbp1 290986 NM_001106100 0006508 // proteolysis // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0021702 // cerebellar Purkinje cell differentiation // inferred from electronic annotation /// 0021702 // cerebellar Purkinje cell differentiation // not recorded /// 0042133 // neurotransmitter metabolic process // inferred from electronic annotation /// 0042133 // neurotransmitter metabolic process // not recorded /// 0050905 // neuromuscular process // inferred from electronic annotation /// 0050905 // neuromuscular process // not recorded 0000221 // vacuolar proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 1380340_at BF387865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387865 /DB_XREF=gi:11372689 /DB_XREF=UI-R-CA1-bbv-f-07-0-UI.s1 /CLONE=UI-R-CA1-bbv-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.63789.1 /TIER=ConsEnd /STK=2 /UG=Rn.63789 /UG_TITLE=ESTs BF387865 1380341_at BE096469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096469 /DB_XREF=gi:8487400 /DB_XREF=UI-R-BU0-apg-e-04-0-UI.s1 /CLONE=UI-R-BU0-apg-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.26643.1 /TIER=ConsEnd /STK=2 /UG=Rn.26643 /UG_TITLE=ESTs BE096469 1380342_at BF420511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420511 /DB_XREF=gi:11408500 /DB_XREF=UI-R-BJ2-bpw-g-12-0-UI.s1 /CLONE=UI-R-BJ2-bpw-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.12573.1 /TIER=ConsEnd /STK=2 /UG=Rn.12573 /UG_TITLE=ESTs BF420511 hypothetical protein LOC680885 LOC680885 680885 NM_001109431 1380343_at BF390523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390523 /DB_XREF=gi:11375374 /DB_XREF=UI-R-CA1-bcc-b-01-0-UI.s1 /CLONE=UI-R-CA1-bcc-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.64074.1 /TIER=ConsEnd /STK=2 /UG=Rn.64074 /UG_TITLE=ESTs BF390523 Thyroid adenoma associated Thada 313865 NM_001191769 /// XM_001060686 /// XM_233829 0005488 // binding // inferred from electronic annotation 1380344_at BM387968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387968 /DB_XREF=gi:18188021 /DB_XREF=UI-R-CN1-cjk-l-24-0-UI.s1 /CLONE=UI-R-CN1-cjk-l-24-0-UI /FEA=EST /CNT=3 /TID=Rn.13194.2 /TIER=ConsEnd /STK=2 /UG=Rn.13194 /UG_TITLE=ESTs BM387968 1380345_at AW529036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529036 /DB_XREF=gi:7171490 /DB_XREF=UI-R-BT1-aka-g-11-0-UI.s1 /CLONE=UI-R-BT1-aka-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.47079.1 /TIER=ConsEnd /STK=2 /UG=Rn.47079 /UG_TITLE=ESTs AW529036 1380346_at BE100150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100150 /DB_XREF=gi:8492038 /DB_XREF=UI-R-BJ1-ats-c-08-0-UI.s1 /CLONE=UI-R-BJ1-ats-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.53931.1 /TIER=ConsEnd /STK=2 /UG=Rn.53931 /UG_TITLE=ESTs, Weakly similar to serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 5 (Rattus norvegicus) (R.norvegicus) BE100150 serine (or cysteine) proteinase inhibitor, clade B, member 1a Serpinb1a 291091 NM_001031642 0042176 // regulation of protein catabolic process // inferred from electronic annotation /// 0042176 // regulation of protein catabolic process // not recorded 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1380347_at AI030806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030806 /DB_XREF=gi:3248632 /DB_XREF=UI-R-C0-je-a-06-0-UI.s1 /CLONE=UI-R-C0-je-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.18599.1 /TIER=ConsEnd /STK=2 /UG=Rn.18599 /UG_TITLE=ESTs AI030806 1380348_at AI601956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI601956 /DB_XREF=gi:4611117 /DB_XREF=UI-R-Y0-uv-b-03-0-UI.s2 /CLONE=UI-R-Y0-uv-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.40411.1 /TIER=ConsEnd /STK=2 /UG=Rn.40411 /UG_TITLE=ESTs AI601956 wingless-type MMTV integration site family, member 9A Wnt9a 287357 NM_001105783 0007223 // Wnt receptor signaling pathway, calcium modulating pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0031575 // mitotic cell cycle G1/S transition checkpoint // not recorded /// 0032331 // negative regulation of chondrocyte differentiation // not recorded /// 0035117 // embryonic arm morphogenesis // not recorded /// 0043154 // negative regulation of caspase activity // not recorded /// 0045597 // positive regulation of cell differentiation // not recorded /// 0045880 // positive regulation of smoothened signaling pathway // not recorded /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048856 // anatomical structure development // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060548 // negative regulation of cell death // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043028 // caspase regulator activity // not recorded 1380349_at BF395595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395595 /DB_XREF=gi:11380565 /DB_XREF=UI-R-CM0-bjo-h-03-0-UI.s1 /CLONE=UI-R-CM0-bjo-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.40989.1 /TIER=ConsEnd /STK=2 /UG=Rn.40989 /UG_TITLE=ESTs BF395595 1380350_at BF400205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400205 /DB_XREF=gi:11385216 /DB_XREF=UI-R-CA1-bjc-o-08-0-UI.s1 /CLONE=UI-R-CA1-bjc-o-08-0-UI /FEA=EST /CNT=3 /TID=Rn.57402.1 /TIER=ConsEnd /STK=2 /UG=Rn.57402 /UG_TITLE=ESTs BF400205 1380351_at AI137310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137310 /DB_XREF=gi:3638087 /DB_XREF=UI-R-C2p-ol-f-04-0-UI.s1 /CLONE=UI-R-C2p-ol-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.29894.1 /TIER=ConsEnd /STK=2 /UG=Rn.29894 /UG_TITLE=ESTs AI137310 1380352_at AA956439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956439 /DB_XREF=gi:4238913 /DB_XREF=UI-R-E1-fj-h-04-0-UI.s1 /CLONE=UI-R-E1-fj-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.32844.1 /TIER=ConsEnd /STK=2 /UG=Rn.32844 /UG_TITLE=ESTs AA956439 1380353_at AW523469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523469 /DB_XREF=gi:7165854 /DB_XREF=UI-R-BO0-aho-e-08-0-UI.s1 /CLONE=UI-R-BO0-aho-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.38659.1 /TIER=ConsEnd /STK=2 /UG=Rn.38659 /UG_TITLE=ESTs AW523469 1380354_at BF388953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388953 /DB_XREF=gi:11373820 /DB_XREF=UI-R-BS2-bdk-e-09-0-UI.s1 /CLONE=UI-R-BS2-bdk-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.62211.1 /TIER=ConsEnd /STK=2 /UG=Rn.62211 /UG_TITLE=ESTs, Weakly similar to TC17 RAT TRANSCRIPTION FACTOR 17 (R.norvegicus) BF388953 zinc finger and SCAN domain containing 10 Zscan10 302962 NM_001106981 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1380355_s_at AW527869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527869 /DB_XREF=gi:7170283 /DB_XREF=UI-R-BT1-akb-b-02-0-UI.s1 /CLONE=UI-R-BT1-akb-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.49686.1 /TIER=ConsEnd /STK=2 /UG=Rn.49686 /UG_TITLE=ESTs AW527869 solute carrier family 6 (neurotransmitter transporter), member 17 Slc6a17 613226 NM_001033079 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation 1380356_at BE111209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111209 /DB_XREF=gi:8503314 /DB_XREF=UI-R-BJ1-auv-h-01-0-UI.s1 /CLONE=UI-R-BJ1-auv-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.51972.1 /TIER=ConsEnd /STK=2 /UG=Rn.51972 /UG_TITLE=ESTs BE111209 solute carrier family 39 (zinc transporter), member 2 Slc39a2 305846 NM_001107260 0006829 // zinc ion transport // not recorded /// 0015674 // di-, tri-valent inorganic cation transport // not recorded /// 0030001 // metal ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0071577 // zinc ion transmembrane transport // not recorded 0016020 // membrane // inferred from electronic annotation 0005385 // zinc ion transmembrane transporter activity // not recorded /// 0046873 // metal ion transmembrane transporter activity // inferred from electronic annotation 1380357_a_at BF396423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396423 /DB_XREF=gi:11381395 /DB_XREF=UI-R-BS2-bdy-a-01-0-UI.s1 /CLONE=UI-R-BS2-bdy-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.12728.1 /TIER=ConsEnd /STK=2 /UG=Rn.12728 /UG_TITLE=ESTs BF396423 1380358_at AW529415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529415 /DB_XREF=gi:7171829 /DB_XREF=UI-R-BT1-akk-a-05-0-UI.s1 /CLONE=UI-R-BT1-akk-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.47194.1 /TIER=ConsEnd /STK=2 /UG=Rn.47194 /UG_TITLE=ESTs AW529415 cell cycle associated protein 1 Caprin1 362173 NM_001012185 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // not recorded 1380359_at BM385856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385856 /DB_XREF=gi:18185909 /DB_XREF=UI-R-DM1-cke-j-07-0-UI.s1 /CLONE=UI-R-DM1-cke-j-07-0-UI /FEA=EST /CNT=3 /TID=Rn.72691.1 /TIER=ConsEnd /STK=2 /UG=Rn.72691 /UG_TITLE=ESTs BM385856 1380360_at AA891814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891814 /DB_XREF=gi:3018693 /DB_XREF=EST195617 /CLONE=RKIAH18 /FEA=EST /CNT=3 /TID=Rn.14712.1 /TIER=ConsEnd /STK=2 /UG=Rn.14712 /UG_TITLE=ESTs AA891814 OMA1 homolog, zinc metallopeptidase (S. cerevisiae) Oma1 298282 NM_001106669 0006508 // proteolysis // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation 1380361_at AI547532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547532 /DB_XREF=gi:4465020 /DB_XREF=UI-R-C3-sr-c-01-0-UI.s1 /CLONE=UI-R-C3-sr-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.38037.1 /TIER=ConsEnd /STK=2 /UG=Rn.38037 /UG_TITLE=ESTs AI547532 1380362_at AW534019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534019 /DB_XREF=gi:7176433 /DB_XREF=UI-R-C4-alm-a-07-0-UI.s1 /CLONE=UI-R-C4-alm-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.48236.1 /TIER=ConsEnd /STK=2 /UG=Rn.48236 /UG_TITLE=ESTs AW534019 Selenophosphate synthetase 1 Sephs1 291314 NM_001104630 0003824 // catalytic activity // inferred from electronic annotation /// 0004756 // selenide, water dikinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1380363_at BF420490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420490 /DB_XREF=gi:11408444 /DB_XREF=UI-R-BJ2-bpw-c-04-0-UI.s1 /CLONE=UI-R-BJ2-bpw-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.63715.1 /TIER=ConsEnd /STK=2 /UG=Rn.63715 /UG_TITLE=ESTs, Weakly similar to core promoter element binding protein (Rattus norvegicus) (R.norvegicus) BF420490 Kruppel-like factor 7 (ubiquitous) Klf7 363243 NM_001108800 0007409 // axonogenesis // not recorded /// 0007411 // axon guidance // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0048813 // dendrite morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1380364_at AI575320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575320 /DB_XREF=gi:4559696 /DB_XREF=UI-R-Y0-vh-c-08-0-UI.s1 /CLONE=UI-R-Y0-vh-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.39145.1 /TIER=ConsEnd /STK=2 /UG=Rn.39145 /UG_TITLE=ESTs AI575320 similar to Gene model 1568 RGD1561115 500686 XM_001053824 /// XM_576068 1380365_at BF403932 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403932 /DB_XREF=gi:11391907 /DB_XREF=UI-R-CA1-bjd-j-07-0-UI.s1 /CLONE=UI-R-CA1-bjd-j-07-0-UI /FEA=EST /CNT=3 /TID=Rn.38689.1 /TIER=ConsEnd /STK=2 /UG=Rn.38689 /UG_TITLE=ESTs BF403932 1380366_at AA996557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996557 /DB_XREF=gi:4280324 /DB_XREF=UI-R-C0-hi-c-02-0-UI.s1 /CLONE=UI-R-C0-hi-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.42814.1 /TIER=ConsEnd /STK=2 /UG=Rn.42814 /UG_TITLE=ESTs, Highly similar to IG MU CHAIN C REGION MEMBRANE-BOUND FORM (M.musculus) AA996557 immunoglobulin heavy chain 6 /// similar to single chain Fv antibody fragment scFv 7-10A Igh-6 /// LOC314509 299357 /// 314509 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0002455 // humoral immune response mediated by circulating immunoglobulin // inferred from electronic annotation /// 0016064 // immunoglobulin mediated immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0045022 // early endosome to late endosome transport // inferred from electronic annotation /// 0045807 // positive regulation of endocytosis // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050853 // B cell receptor signaling pathway // inferred from electronic annotation /// 0050871 // positive regulation of B cell activation // inferred from electronic annotation 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0019815 // B cell receptor complex // inferred from electronic annotation /// 0042571 // immunoglobulin complex, circulating // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003823 // antigen binding // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1380367_at AI602045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602045 /DB_XREF=gi:4611206 /DB_XREF=UI-R-G0-us-d-09-0-UI.s2 /CLONE=UI-R-G0-us-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.40278.1 /TIER=ConsEnd /STK=2 /UG=Rn.40278 /UG_TITLE=ESTs, Weakly similar to A35210 ferroxidase (R.norvegicus) AI602045 coagulation factor VIII, procoagulant component F8 302470 NM_183331 0007155 // cell adhesion // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from direct assay /// 0007597 // blood coagulation, intrinsic pathway // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0031093 // platelet alpha granule lumen // not recorded 0004252 // serine-type endopeptidase activity // inferred from direct assay /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380368_at BF403562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403562 /DB_XREF=gi:11391537 /DB_XREF=UI-R-CA1-bjd-b-10-0-UI.s1 /CLONE=UI-R-CA1-bjd-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.48927.1 /TIER=ConsEnd /STK=2 /UG=Rn.48927 /UG_TITLE=ESTs, Weakly similar to T15599 hypothetical protein C25A11.3 - Caenorhabditis elegans (C.elegans) BF403562 similar to Gene model 996 RGD1560470 362083 XM_001077786 /// XM_342384 1380369_at AI058315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058315 /DB_XREF=gi:3332092 /DB_XREF=UI-R-C1-kl-g-11-0-UI.s1 /CLONE=UI-R-C1-kl-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.20945.1 /TIER=ConsEnd /STK=2 /UG=Rn.20945 /UG_TITLE=ESTs AI058315 1380370_at BF390065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390065 /DB_XREF=gi:11374907 /DB_XREF=UI-R-BS2-bdr-h-02-0-UI.s1 /CLONE=UI-R-BS2-bdr-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.45295.1 /TIER=ConsEnd /STK=2 /UG=Rn.45295 /UG_TITLE=ESTs, Moderately similar to T14316 rig-1 protein - mouse (M.musculus) BF390065 roundabout homolog 3 (Drosophila) Robo3 315564 NM_001108135 0001764 // neuron migration // not recorded /// 0007411 // axon guidance // not recorded /// 0016199 // axon midline choice point recognition // not recorded 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1380371_at BE117361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117361 /DB_XREF=gi:8509466 /DB_XREF=UI-R-BS1-ayn-h-05-0-UI.s1 /CLONE=UI-R-BS1-ayn-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.49044.1 /TIER=ConsEnd /STK=2 /UG=Rn.49044 /UG_TITLE=ESTs BE117361 0005488 // binding // inferred from electronic annotation 1380372_at BF386449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386449 /DB_XREF=gi:11371273 /DB_XREF=UI-R-CA1-bbd-f-06-0-UI.s1 /CLONE=UI-R-CA1-bbd-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.51981.1 /TIER=ConsEnd /STK=2 /UG=Rn.51981 /UG_TITLE=ESTs BF386449 1380373_at BF397926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397926 /DB_XREF=gi:11382911 /DB_XREF=UI-R-BS2-bef-c-06-0-UI.s1 /CLONE=UI-R-BS2-bef-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.64134.1 /TIER=ConsEnd /STK=2 /UG=Rn.64134 /UG_TITLE=ESTs, Highly similar to A54847 GMP synthase (H.sapiens) BF397926 guanine monphosphate synthetase Gmps 295088 NM_001024754 0006164 // purine nucleotide biosynthetic process // inferred from electronic annotation /// 0006177 // GMP biosynthetic process // inferred from direct assay /// 0006177 // GMP biosynthetic process // inferred from electronic annotation /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003921 // GMP synthase activity // inferred from direct assay /// 0003922 // GMP synthase (glutamine-hydrolyzing) activity // inferred from direct assay /// 0003922 // GMP synthase (glutamine-hydrolyzing) activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from direct assay 1380374_at BI282293 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282293 /DB_XREF=gi:14932918 /DB_XREF=UI-R-CU0s-cby-h-04-0-UI.s1 /CLONE=UI-R-CU0s-cby-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.78275.1 /TIER=ConsEnd /STK=2 /UG=Rn.78275 /UG_TITLE=ESTs BI282293 1380375_at BE097519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097519 /DB_XREF=gi:8488450 /DB_XREF=UI-R-BO1-apy-d-10-0-UI.s1 /CLONE=UI-R-BO1-apy-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.39130.1 /TIER=ConsEnd /STK=2 /UG=Rn.39130 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BE097519 1380376_at BI290853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290853 /DB_XREF=gi:14949824 /DB_XREF=UI-R-DK0-cgi-c-06-0-UI.s1 /CLONE=UI-R-DK0-cgi-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.40763.1 /TIER=ConsEnd /STK=2 /UG=Rn.40763 /UG_TITLE=ESTs BI290853 1380377_at AI113328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113328 /DB_XREF=gi:3513277 /DB_XREF=UI-R-C2p-nr-g-07-0-UI.s1 /CLONE=UI-R-C2p-nr-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.26996.1 /TIER=ConsEnd /STK=2 /UG=Rn.26996 /UG_TITLE=ESTs, Weakly similar to PT0201 protein-tyrosine kinase (R.norvegicus) AI113328 Bruton agammaglobulinemia tyrosine kinase Btk 367901 NM_001007798 0000302 // response to reactive oxygen species // inferred from mutant phenotype /// 0002553 // histamine secretion by mast cell // inferred from mutant phenotype /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded /// 0009607 // response to biotic stimulus // inferred from direct assay /// 0010033 // response to organic substance // inferred from mutant phenotype /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0048469 // cell maturation // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0031410 // cytoplasmic vesicle // not recorded /// 0045121 // membrane raft // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1380378_at H31253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31253 /DB_XREF=gi:976670 /DB_XREF=EST105118 /CLONE=RPCAG01 /FEA=EST /CNT=3 /TID=Rn.43793.1 /TIER=ConsEnd /STK=2 /UG=Rn.43793 /UG_TITLE=ESTs H31253 Transmembrane protein 51 Tmem51 500578 NM_001109273 1380379_at AI228000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228000 /DB_XREF=gi:3811887 /DB_XREF=EST224695 /CLONE=RBRCO62 /FEA=EST /CNT=3 /TID=Rn.24824.1 /TIER=ConsEnd /STK=2 /UG=Rn.24824 /UG_TITLE=ESTs AI228000 1380380_at BI296096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296096 /DB_XREF=gi:14960195 /DB_XREF=UI-R-DK0-cew-c-08-0-UI.s1 /CLONE=UI-R-DK0-cew-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.27029.1 /TIER=ConsEnd /STK=2 /UG=Rn.27029 /UG_TITLE=ESTs BI296096 1380381_at AI709513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709513 /DB_XREF=gi:4999289 /DB_XREF=UI-R-C3-tn-b-09-0-UI.s1 /CLONE=UI-R-C3-tn-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.41558.1 /TIER=ConsEnd /STK=2 /UG=Rn.41558 /UG_TITLE=ESTs AI709513 asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae) Alg2 313231 NM_001100710 0006488 // dolichol-linked oligosaccharide biosynthetic process // inferred from electronic annotation /// 0006488 // dolichol-linked oligosaccharide biosynthetic process // not recorded /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0033577 // protein glycosylation in endoplasmic reticulum // inferred from electronic annotation /// 0033577 // protein glycosylation in endoplasmic reticulum // not recorded /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0000033 // alpha-1,3-mannosyltransferase activity // inferred from electronic annotation /// 0000033 // alpha-1,3-mannosyltransferase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0043495 // protein anchor // inferred from electronic annotation /// 0043495 // protein anchor // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded 1380382_at AW520863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520863 /DB_XREF=gi:7163241 /DB_XREF=UI-R-BJ0p-age-d-02-0-UI.s1 /CLONE=UI-R-BJ0p-age-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.44945.1 /TIER=ConsEnd /STK=2 /UG=Rn.44945 /UG_TITLE=ESTs AW520863 1380383_at AI030650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030650 /DB_XREF=gi:3248476 /DB_XREF=UI-R-C0-jd-c-08-0-UI.s1 /CLONE=UI-R-C0-jd-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.18556.1 /TIER=ConsEnd /STK=2 /UG=Rn.18556 /UG_TITLE=ESTs AI030650 ADP-ribosylation factor-like 4D Arl4d 303559 NM_001107052 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1380384_at BF398176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398176 /DB_XREF=gi:11383162 /DB_XREF=UI-R-BS2-ben-c-09-0-UI.s1 /CLONE=UI-R-BS2-ben-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.26991.1 /TIER=ConsEnd /STK=2 /UG=Rn.26991 /UG_TITLE=ESTs BF398176 1380385_at BF410322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410322 /DB_XREF=gi:11398297 /DB_XREF=UI-R-CA1-bjw-b-05-0-UI.s1 /CLONE=UI-R-CA1-bjw-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.64061.1 /TIER=ConsEnd /STK=2 /UG=Rn.64061 /UG_TITLE=ESTs, Moderately similar to T42701 hypothetical protein DKFZp434G156.1 (H.sapiens) BF410322 coiled-coil domain containing 136 Ccdc136 362331 XM_001064000 /// XM_342652 0005739 // mitochondrion // not recorded 0005515 // protein binding // not recorded 1380386_at AI102275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102275 /DB_XREF=gi:3707074 /DB_XREF=EST211564 /CLONE=RBRCB48 /FEA=EST /CNT=3 /TID=Rn.28148.1 /TIER=ConsEnd /STK=2 /UG=Rn.28148 /UG_TITLE=ESTs, Weakly similar to S26689 hypothetical protein hc1 - mouse (M.musculus) AI102275 1380387_at BE105492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105492 /DB_XREF=gi:8497594 /DB_XREF=UI-R-BX0-arv-d-07-0-UI.s1 /CLONE=UI-R-BX0-arv-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.49165.1 /TIER=ConsEnd /STK=2 /UG=Rn.49165 /UG_TITLE=ESTs BE105492 Forkhead box P2 Foxp2 500037 XM_001056575 /// XM_002726362 /// XM_002726363 /// XM_002726364 /// XM_002729284 /// XM_002729285 /// XM_002729286 /// XM_575393 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0009790 // embryo development // not recorded /// 0009791 // post-embryonic development // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0021549 // cerebellum development // not recorded /// 0021757 // caudate nucleus development // not recorded /// 0021758 // putamen development // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0030324 // lung development // not recorded /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0040007 // growth // not recorded /// 0042297 // vocal learning // not recorded /// 0043010 // camera-type eye development // not recorded /// 0048286 // lung alveolus development // not recorded /// 0048745 // smooth muscle tissue development // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0060013 // righting reflex // not recorded /// 0060501 // positive regulation of epithelial cell proliferation involved in lung morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1380388_at BF418094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418094 /DB_XREF=gi:11406083 /DB_XREF=UI-R-CA0-blz-d-05-0-UI.s1 /CLONE=UI-R-CA0-blz-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.63363.1 /TIER=ConsEnd /STK=2 /UG=Rn.63363 /UG_TITLE=ESTs BF418094 1380389_at BF417079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417079 /DB_XREF=gi:11405068 /DB_XREF=UI-R-CN0-blb-f-09-0-UI.s1 /CLONE=UI-R-CN0-blb-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.19423.1 /TIER=ConsEnd /STK=2 /UG=Rn.19423 /UG_TITLE=ESTs BF417079 1380390_at AW523643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523643 /DB_XREF=gi:7166028 /DB_XREF=UI-R-BO0-aic-d-10-0-UI.s1 /CLONE=UI-R-BO0-aic-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.41929.1 /TIER=ConsEnd /STK=2 /UG=Rn.41929 /UG_TITLE=ESTs AW523643 1380391_at BE119019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119019 /DB_XREF=gi:8511124 /DB_XREF=UI-R-CA0-azx-e-03-0-UI.s1 /CLONE=UI-R-CA0-azx-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.49109.1 /TIER=ConsEnd /STK=2 /UG=Rn.49109 /UG_TITLE=ESTs BE119019 splicing factor, arginine/serine-rich 7, 35kDa Sfrs7 362687 NM_001039035 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380392_at BF406259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406259 /DB_XREF=gi:11394234 /DB_XREF=UI-R-CA1-bjf-m-20-0-UI.s1 /CLONE=UI-R-CA1-bjf-m-20-0-UI /FEA=EST /CNT=3 /TID=Rn.60933.1 /TIER=ConsEnd /STK=2 /UG=Rn.60933 /UG_TITLE=ESTs BF406259 Bromodomain containing 4 Brd4 362844 NM_001100903 0006468 // protein phosphorylation // not recorded /// 0043388 // positive regulation of DNA binding // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded 1380393_at AI409083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409083 /DB_XREF=gi:4252587 /DB_XREF=EST237375 /CLONE=RKIDK75 /FEA=EST /CNT=3 /TID=Rn.19140.1 /TIER=ConsEnd /STK=2 /UG=Rn.19140 /UG_TITLE=ESTs AI409083 crystallin, zeta Cryz 362061 NM_001012183 0008152 // metabolic process // inferred from electronic annotation /// 0042178 // xenobiotic catabolic process // not recorded /// 0042178 // xenobiotic catabolic process // inferred from sequence or structural similarity /// 0042178 // xenobiotic catabolic process // inferred from electronic annotation /// 0051289 // protein homotetramerization // inferred from electronic annotation /// 0051289 // protein homotetramerization // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0003730 // mRNA 3'-UTR binding // not recorded /// 0003730 // mRNA 3'-UTR binding // inferred from sequence or structural similarity /// 0003730 // mRNA 3'-UTR binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003960 // NADPH:quinone reductase activity // not recorded /// 0003960 // NADPH:quinone reductase activity // inferred from sequence or structural similarity /// 0003960 // NADPH:quinone reductase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0070402 // NADPH binding // not recorded /// 0070402 // NADPH binding // inferred from sequence or structural similarity /// 0070402 // NADPH binding // inferred from electronic annotation /// 0070404 // NADH binding // not recorded /// 0070404 // NADH binding // inferred from sequence or structural similarity 1380394_at AI549538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549538 /DB_XREF=gi:4467026 /DB_XREF=UI-R-C3-tt-b-01-0-UI.s1 /CLONE=UI-R-C3-tt-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.41798.1 /TIER=ConsEnd /STK=2 /UG=Rn.41798 /UG_TITLE=ESTs AI549538 1380395_at AI230394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230394 /DB_XREF=gi:3814281 /DB_XREF=EST227089 /CLONE=REMCW04 /FEA=EST /CNT=3 /TID=Rn.3287.1 /TIER=ConsEnd /STK=2 /UG=Rn.3287 /UG_TITLE=ESTs AI230394 1380396_at BE115208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115208 /DB_XREF=gi:8507313 /DB_XREF=UI-R-BJ1-avs-e-05-0-UI.s1 /CLONE=UI-R-BJ1-avs-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.34850.1 /TIER=ConsEnd /STK=2 /UG=Rn.34850 /UG_TITLE=ESTs BE115208 1380397_at AI070744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070744 /DB_XREF=gi:3396995 /DB_XREF=UI-R-C2-no-d-02-0-UI.s1 /CLONE=UI-R-C2-no-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.19821.1 /TIER=ConsEnd /STK=2 /UG=Rn.19821 /UG_TITLE=ESTs AI070744 1380398_at AI168970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI168970 /DB_XREF=gi:3705278 /DB_XREF=EST214798 /CLONE=RKIBL34 /FEA=EST /CNT=3 /TID=Rn.37723.1 /TIER=ConsEnd /STK=2 /UG=Rn.37723 /UG_TITLE=ESTs AI168970 1380399_at BF393255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393255 /DB_XREF=gi:11378115 /DB_XREF=UI-R-CA0-bfs-f-06-0-UI.s1 /CLONE=UI-R-CA0-bfs-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.53455.1 /TIER=ConsEnd /STK=2 /UG=Rn.53455 /UG_TITLE=ESTs BF393255 1380400_at BF402498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402498 /DB_XREF=gi:11390473 /DB_XREF=UI-R-CA0-bhr-a-11-0-UI.s1 /CLONE=UI-R-CA0-bhr-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.60059.1 /TIER=ConsEnd /STK=2 /UG=Rn.60059 /UG_TITLE=ESTs BF402498 1380401_at BF563413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563413 /DB_XREF=gi:11673143 /DB_XREF=UI-R-BT1-akh-d-07-0-UI.r1 /CLONE=UI-R-BT1-akh-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.53431.1 /TIER=ConsEnd /STK=2 /UG=Rn.53431 /UG_TITLE=ESTs BF563413 1380402_at AA818127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818127 /DB_XREF=gi:4198641 /DB_XREF=UI-R-A0-am-h-07-0-UI.s1 /CLONE=UI-R-A0-am-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.1287.1 /TIER=ConsEnd /STK=2 /UG=Rn.1287 /UG_TITLE=ESTs AA818127 1380403_at AI408839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408839 /DB_XREF=gi:4252343 /DB_XREF=EST237130 /CLONE=RKIDP45 /FEA=EST /CNT=3 /TID=Rn.44048.1 /TIER=ConsEnd /STK=2 /UG=Rn.44048 /UG_TITLE=ESTs, Moderately similar to Y6C1_HUMAN PUTATIVE PROTEIN DJ747H23.2 (H.sapiens) AI408839 RWD domain containing 2A Rwdd2a 363110 NM_001108773 1380404_at H31722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31722 /DB_XREF=gi:977139 /DB_XREF=EST106068 /CLONE=RPCAW93 /FEA=EST /CNT=3 /TID=Rn.14586.1 /TIER=ConsEnd /STK=2 /UG=Rn.14586 /UG_TITLE=ESTs H31722 1380405_at BF549570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549570 /DB_XREF=gi:11659300 /DB_XREF=UI-R-C1-lj-d-01-0-UI.r1 /CLONE=UI-R-C1-lj-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.19213.1 /TIER=ConsEnd /STK=2 /UG=Rn.19213 /UG_TITLE=ESTs BF549570 septin 8 Sept8 303135 NM_001107002 0007049 // cell cycle // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0031105 // septin complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1380406_at BE115630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115630 /DB_XREF=gi:8507735 /DB_XREF=UI-R-BJ1-avy-b-05-0-UI.s1 /CLONE=UI-R-BJ1-avy-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.27082.1 /TIER=ConsEnd /STK=2 /UG=Rn.27082 /UG_TITLE=ESTs BE115630 1380407_at AI179886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179886 /DB_XREF=gi:3730524 /DB_XREF=EST223617 /CLONE=RSPCN31 /FEA=EST /CNT=3 /TID=Rn.49290.1 /TIER=ConsEnd /STK=2 /UG=Rn.49290 /UG_TITLE=ESTs AI179886 similar to HTGN29 protein; keratinocytes associated transmembrane protein 2 RGD1310352 303122 NM_001106999 0016021 // integral to membrane // inferred from electronic annotation 1380408_at BI290397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290397 /DB_XREF=gi:14948927 /DB_XREF=UI-R-DK0-cfv-g-09-0-UI.s1 /CLONE=UI-R-DK0-cfv-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.79522.1 /TIER=ConsEnd /STK=2 /UG=Rn.79522 /UG_TITLE=ESTs BI290397 1380409_at BF413455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413455 /DB_XREF=gi:11401444 /DB_XREF=UI-R-BT1-bob-d-02-0-UI.s1 /CLONE=UI-R-BT1-bob-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.62349.1 /TIER=ConsEnd /STK=2 /UG=Rn.62349 /UG_TITLE=ESTs BF413455 1380410_at AI043958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043958 /DB_XREF=gi:3290693 /DB_XREF=UI-R-C0-jk-h-12-0-UI.s1 /CLONE=UI-R-C0-jk-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.23216.1 /TIER=ConsEnd /STK=2 /UG=Rn.23216 /UG_TITLE=ESTs AI043958 1380411_at BI293378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293378 /DB_XREF=gi:14954818 /DB_XREF=UI-R-DK0-cdo-e-03-0-UI.s1 /CLONE=UI-R-DK0-cdo-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.36169.1 /TIER=ConsEnd /STK=2 /UG=Rn.36169 /UG_TITLE=ESTs, Weakly similar to aspartate transaminase (R.norvegicus) BI293378 glutamic-oxaloacetic transaminase 1-like 1 Got1l1 306540 NM_001014003 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1380412_at AI411098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411098 /DB_XREF=gi:4254602 /DB_XREF=EST239392 /CLONE=RKIET27 /FEA=EST /CNT=3 /TID=Rn.37959.1 /TIER=ConsEnd /STK=2 /UG=Rn.37959 /UG_TITLE=ESTs AI411098 elaC homolog 1 (E. coli) Elac1 307604 NM_001107406 0008033 // tRNA processing // inferred from electronic annotation /// 0042779 // tRNA 3'-trailer cleavage // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016891 // endoribonuclease activity, producing 5'-phosphomonoesters // inferred from electronic annotation /// 0042781 // 3'-tRNA processing endoribonuclease activity // inferred from electronic annotation 1380413_at BF564071 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564071 /DB_XREF=gi:11673801 /DB_XREF=UI-R-C4-alc-h-07-0-UI.r1 /CLONE=UI-R-C4-alc-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.65564.1 /TIER=ConsEnd /STK=2 /UG=Rn.65564 /UG_TITLE=ESTs BF564071 1380414_at AA996726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996726 /DB_XREF=gi:4280492 /DB_XREF=UI-R-C0-hf-g-02-0-UI.s1 /CLONE=UI-R-C0-hf-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.23000.1 /TIER=ConsEnd /STK=2 /UG=Rn.23000 /UG_TITLE=ESTs, Weakly similar to A44437 regenerating liver inhibitory factor RLIF-1 - rat (R.norvegicus) AA996726 B-cell CLL/lymphoma 3 Bcl3 680611 NM_001109422 0000060 // protein import into nucleus, translocation // not recorded /// 0002268 // follicular dendritic cell differentiation // not recorded /// 0002315 // marginal zone B cell differentiation // not recorded /// 0002455 // humoral immune response mediated by circulating immunoglobulin // not recorded /// 0002467 // germinal center formation // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded /// 0009615 // response to virus // not recorded /// 0010225 // response to UV-C // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0019730 // antimicrobial humoral response // not recorded /// 0030198 // extracellular matrix organization // not recorded /// 0030330 // DNA damage response, signal transduction by p53 class mediator // not recorded /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0042088 // T-helper 1 type immune response // not recorded /// 0042345 // regulation of NF-kappaB import into nucleus // not recorded /// 0042536 // negative regulation of tumor necrosis factor biosynthetic process // not recorded /// 0042742 // defense response to bacterium // not recorded /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded /// 0042832 // defense response to protozoan // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0045064 // T-helper 2 cell differentiation // not recorded /// 0045082 // positive regulation of interleukin-10 biosynthetic process // not recorded /// 0045415 // negative regulation of interleukin-8 biosynthetic process // not recorded /// 0045727 // positive regulation of translation // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048536 // spleen development // not recorded /// 0051101 // regulation of DNA binding // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0032996 // Bcl3-Bcl10 complex // not recorded /// 0033257 // Bcl3/NF-kappaB2 complex // not recorded /// 0043234 // protein complex // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0030528 // transcription regulator activity // not recorded 1380415_at AI233027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233027 /DB_XREF=gi:3816907 /DB_XREF=EST229715 /CLONE=RKICJ94 /FEA=EST /CNT=3 /TID=Rn.33970.1 /TIER=ConsEnd /STK=2 /UG=Rn.33970 /UG_TITLE=ESTs AI233027 1380416_at BF284504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284504 /DB_XREF=gi:11215574 /DB_XREF=EST449095 /CLONE=RGIER39 /FEA=EST /CNT=3 /TID=Rn.29477.1 /TIER=ConsEnd /STK=2 /UG=Rn.29477 /UG_TITLE=ESTs BF284504 1380417_at AI412138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412138 /DB_XREF=gi:4255642 /DB_XREF=EST240432 /CLONE=RKIEH05 /FEA=EST /CNT=3 /TID=Rn.49025.1 /TIER=ConsEnd /STK=2 /UG=Rn.49025 /UG_TITLE=ESTs AI412138 CKLF-like MARVEL transmembrane domain containing 4 Cmtm4 498902 NM_001172151 /// XM_002725373 /// XM_574191 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1380418_at BF390432 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390432 /DB_XREF=gi:11375278 /DB_XREF=UI-R-CA1-bch-a-05-0-UI.s1 /CLONE=UI-R-CA1-bch-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.61112.1 /TIER=ConsEnd /STK=2 /UG=Rn.61112 /UG_TITLE=ESTs BF390432 1380419_at BF287246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287246 /DB_XREF=gi:11218302 /DB_XREF=EST451823 /CLONE=RGIGD37 /FEA=EST /CNT=3 /TID=Rn.25024.1 /TIER=ConsEnd /STK=2 /UG=Rn.25024 /UG_TITLE=ESTs, Weakly similar to S50643 hypothetical protein YER140w - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BF287246 Transmembrane anterior posterior transformation 1 Tapt1 305386 XM_001059604 /// XM_223500 0001701 // in utero embryonic development // not recorded /// 0009791 // post-embryonic development // not recorded /// 0048706 // embryonic skeletal system development // not recorded 1380420_at AI549585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549585 /DB_XREF=gi:4467073 /DB_XREF=UI-R-C3-tt-f-12-0-UI.s1 /CLONE=UI-R-C3-tt-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.41933.1 /TIER=ConsEnd /STK=2 /UG=Rn.41933 /UG_TITLE=ESTs AI549585 1380421_s_at AW532194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532194 /DB_XREF=gi:7174608 /DB_XREF=UI-R-C4-alj-e-02-0-UI.s1 /CLONE=UI-R-C4-alj-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.42063.1 /TIER=ConsEnd /STK=2 /UG=Rn.42063 /UG_TITLE=ESTs, Highly similar to GFI1 RAT ZINC FINGER PROTEIN GFI-1 (R.norvegicus) AW532194 growth factor independent 1 transcription repressor Gfi1 24388 NM_012566 0006350 // transcription // inferred from electronic annotation /// 0007638 // mechanosensory behavior // not recorded /// 0009996 // negative regulation of cell fate specification // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010956 // negative regulation of calcidiol 1-monooxygenase activity // inferred from electronic annotation /// 0010956 // negative regulation of calcidiol 1-monooxygenase activity // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0042491 // auditory receptor cell differentiation // not recorded /// 0042660 // positive regulation of cell fate specification // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1380422_at BG376951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376951 /DB_XREF=gi:13301423 /DB_XREF=UI-R-CU0-bvl-d-09-0-UI.s1 /CLONE=UI-R-CU0-bvl-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.66457.1 /TIER=ConsEnd /STK=2 /UG=Rn.66457 /UG_TITLE=ESTs, Weakly similar to T46428 hypothetical protein DKFZp434B2226.1 (H.sapiens) BG376951 similar to sidekick 1 RGD1560686 304297 XR_085586 /// XR_085987 1380423_at BF547213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547213 /DB_XREF=gi:11638320 /DB_XREF=UI-R-BT0-qm-f-01-0-UI.r1 /CLONE=UI-R-BT0-qm-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.35114.1 /TIER=ConsEnd /STK=2 /UG=Rn.35114 /UG_TITLE=ESTs BF547213 1380424_at AA964950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964950 /DB_XREF=gi:4279824 /DB_XREF=UI-R-C0-hb-a-12-0-UI.s1 /CLONE=UI-R-C0-hb-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.11961.1 /TIER=ConsEnd /STK=2 /UG=Rn.11961 /UG_TITLE=ESTs AA964950 UBX domain protein 11 Ubxn11 192207 NM_138853 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 1380425_at AI012859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012859 /DB_XREF=gi:3226691 /DB_XREF=EST207310 /CLONE=RPLBC49 /FEA=EST /CNT=3 /TID=Rn.17554.1 /TIER=ConsEnd /STK=2 /UG=Rn.17554 /UG_TITLE=ESTs AI012859 Ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent) Rnasel 359726 NM_182673 0006364 // rRNA processing // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation 0016363 // nuclear matrix // inferred from direct assay 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0004540 // ribonuclease activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016891 // endoribonuclease activity, producing 5'-phosphomonoesters // inferred from electronic annotation /// 0019843 // rRNA binding // inferred from direct assay 1380426_at BF404433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404433 /DB_XREF=gi:11392408 /DB_XREF=UI-R-CA1-bif-c-05-0-UI.s1 /CLONE=UI-R-CA1-bif-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.64220.1 /TIER=ConsEnd /STK=2 /UG=Rn.64220 /UG_TITLE=ESTs BF404433 Ankyrin repeat domain 52 Ankrd52 362811 NM_001191875 /// XM_001070685 /// XM_343139 0005515 // protein binding // not recorded 1380427_at BF413017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413017 /DB_XREF=gi:11401046 /DB_XREF=UI-R-CA0-bod-b-07-0-UI.s1 /CLONE=UI-R-CA0-bod-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.62130.1 /TIER=ConsEnd /STK=2 /UG=Rn.62130 /UG_TITLE=ESTs BF413017 1380428_at AI030973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030973 /DB_XREF=gi:3248799 /DB_XREF=UI-R-C0-jf-h-03-0-UI.s1 /CLONE=UI-R-C0-jf-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.21428.1 /TIER=ConsEnd /STK=2 /UG=Rn.21428 /UG_TITLE=ESTs AI030973 1380429_at BE106743 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106743 /DB_XREF=gi:8498845 /DB_XREF=UI-R-BO1-asr-f-08-0-UI.s1 /CLONE=UI-R-BO1-asr-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.49089.1 /TIER=ConsEnd /STK=2 /UG=Rn.49089 /UG_TITLE=ESTs, Moderately similar to JE0368 doublecortin homolog - mouse (M.musculus) BE106743 doublecortin-like kinase 1 Dclk1 83825 NM_021584 /// NM_053343 0001764 // neuron migration // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007420 // brain development // not recorded /// 0009615 // response to virus // not recorded /// 0021952 // central nervous system projection neuron axonogenesis // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0048675 // axon extension // not recorded /// 0048813 // dendrite morphogenesis // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1380430_at BF386177 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386177 /DB_XREF=gi:11371001 /DB_XREF=UI-R-CA1-bba-h-04-0-UI.s1 /CLONE=UI-R-CA1-bba-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.50150.1 /TIER=ConsEnd /STK=2 /UG=Rn.50150 /UG_TITLE=ESTs BF386177 1380431_at AA893000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893000 /DB_XREF=gi:3019879 /DB_XREF=EST196803 /CLONE=RKIBA91 /FEA=EST /CNT=3 /TID=Rn.12947.1 /TIER=ConsEnd /STK=2 /UG=Rn.12947 /UG_TITLE=ESTs, Moderately similar to T00335 hypothetical protein KIAA0564 (H.sapiens) AA893000 similar to KIAA0564 protein RGD1308772 290381 XM_002725136 /// XM_214237 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1380432_at AI014030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI014030 /DB_XREF=gi:3226966 /DB_XREF=EST207585 /CLONE=RSPBD55 /FEA=EST /CNT=3 /TID=Rn.14280.1 /TIER=ConsEnd /STK=2 /UG=Rn.14280 /UG_TITLE=ESTs, Highly similar to A57469 CMP-N-acetylneuraminate monooxygenase (M.musculus) AI014030 cytidine monophosphate-N-acetylneuraminic acid hydroxylase Cmah 361245 NM_001024273 0046381 // CMP-N-acetylneuraminate metabolic process // inferred from electronic annotation /// 0046381 // CMP-N-acetylneuraminate metabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004497 // monooxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0030338 // CMP-N-acetylneuraminate monooxygenase activity // inferred from electronic annotation /// 0030338 // CMP-N-acetylneuraminate monooxygenase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation 1380433_at AI229240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229240 /DB_XREF=gi:4135425 /DB_XREF=EST225935 /CLONE=RBRDF82 /FEA=EST /CNT=3 /TID=Rn.22923.2 /TIER=ConsEnd /STK=2 /UG=Rn.22923 /UG_TITLE=ESTs AI229240 1380434_at BF417312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417312 /DB_XREF=gi:11405301 /DB_XREF=UI-R-CN0-bky-f-09-0-UI.s1 /CLONE=UI-R-CN0-bky-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.27410.1 /TIER=ConsEnd /STK=2 /UG=Rn.27410 /UG_TITLE=ESTs BF417312 1380435_at AI112329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112329 /DB_XREF=gi:3512278 /DB_XREF=UI-R-Y0-mg-e-04-0-UI.s1 /CLONE=UI-R-Y0-mg-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.42117.1 /TIER=ConsEnd /STK=2 /UG=Rn.42117 /UG_TITLE=ESTs, Highly similar to SHO2_MOUSE Leucine-rich repeat protein SHOC-2 (Ras-binding protein Sur-8) (M.musculus) AI112329 soc-2 (suppressor of clear) homolog (C. elegans) Shoc2 309548 NM_001013155 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from sequence or structural similarity /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation 0000164 // protein phosphatase type 1 complex // not recorded /// 0000164 // protein phosphatase type 1 complex // inferred from sequence or structural similarity /// 0000164 // protein phosphatase type 1 complex // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // not recorded /// 0019903 // protein phosphatase binding // inferred from sequence or structural similarity /// 0019903 // protein phosphatase binding // inferred from electronic annotation 1380436_at AW252814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252814 /DB_XREF=gi:6596405 /DB_XREF=UI-R-BJ0-ael-a-08-0-UI.s1 /CLONE=UI-R-BJ0-ael-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.44764.1 /TIER=ConsEnd /STK=2 /UG=Rn.44764 /UG_TITLE=ESTs AW252814 RT1 class Ia, locus A2 RT1-A2 24974 NM_001008829 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 1380437_at BE104421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104421 /DB_XREF=gi:8496561 /DB_XREF=UI-R-BX0-asa-f-06-0-UI.s1 /CLONE=UI-R-BX0-asa-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.47650.1 /TIER=ConsEnd /STK=2 /UG=Rn.47650 /UG_TITLE=ESTs BE104421 1380438_at BF390276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390276 /DB_XREF=gi:11375122 /DB_XREF=UI-R-CA1-bcm-h-09-0-UI.s1 /CLONE=UI-R-CA1-bcm-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.18263.1 /TIER=ConsEnd /STK=2 /UG=Rn.18263 /UG_TITLE=ESTs BF390276 1380439_at AI548395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548395 /DB_XREF=gi:4465883 /DB_XREF=UI-R-C3-te-d-05-0-UI.s1 /CLONE=UI-R-C3-te-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.42081.1 /TIER=ConsEnd /STK=2 /UG=Rn.42081 /UG_TITLE=ESTs AI548395 1380440_at BF549478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549478 /DB_XREF=gi:11659250 /DB_XREF=UI-R-C2-mv-h-10-0-UI.r1 /CLONE=UI-R-C2-mv-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.19812.1 /TIER=ConsEnd /STK=2 /UG=Rn.19812 /UG_TITLE=ESTs BF549478 1380441_at AI009637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009637 /DB_XREF=gi:3223469 /DB_XREF=EST204088 /CLONE=RLUBG63 /FEA=EST /CNT=3 /TID=Rn.34842.1 /TIER=ConsEnd /STK=2 /UG=Rn.34842 /UG_TITLE=ESTs AI009637 Tax1 (human T-cell leukemia virus type I) binding protein 3 Tax1bp3 360564 NM_001025419 0007266 // Rho protein signal transduction // inferred from sequence or structural similarity /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1380442_at AI235507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235507 /DB_XREF=gi:3829013 /DB_XREF=EST232069 /CLONE=ROVCS72 /FEA=EST /CNT=3 /TID=Rn.25330.1 /TIER=ConsEnd /STK=2 /UG=Rn.25330 /UG_TITLE=ESTs AI235507 Homeobox C9 Hoxc9 368178 NM_001100907 /// XM_347335 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048706 // embryonic skeletal system development // not recorded 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1380443_at AA899371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899371 /DB_XREF=gi:4231868 /DB_XREF=UI-R-E0-cl-h-02-0-UI.s2 /CLONE=UI-R-E0-cl-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.2684.1 /TIER=ConsEnd /STK=2 /UG=Rn.2684 /UG_TITLE=ESTs AA899371 PWP1 homolog (S. cerevisiae) Pwp1 362856 NM_001191877 /// XM_001075998 /// XM_343186 1380444_at AA957467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957467 /DB_XREF=gi:4277357 /DB_XREF=UI-R-E1-fw-b-09-0-UI.s1 /CLONE=UI-R-E1-fw-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.9291.1 /TIER=ConsEnd /STK=2 /UG=Rn.9291 /UG_TITLE=ESTs AA957467 Upper zone of growth plate and cartilage matrix associated Ucma 291312 NM_001106121 0045668 // negative regulation of osteoblast differentiation // inferred from electronic annotation /// 0045668 // negative regulation of osteoblast differentiation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded 1380445_at BI294409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294409 /DB_XREF=gi:14956834 /DB_XREF=UI-R-DK0-cei-e-05-0-UI.s1 /CLONE=UI-R-DK0-cei-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.33320.1 /TIER=ConsEnd /STK=2 /UG=Rn.33320 /UG_TITLE=ESTs, Weakly similar to I39073 interferon alpha-beta receptor, beta subunit long form (H.sapiens) BI294409 1380446_at BF396749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396749 /DB_XREF=gi:11381730 /DB_XREF=UI-R-BS2-beu-g-02-0-UI.s1 /CLONE=UI-R-BS2-beu-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.50043.1 /TIER=ConsEnd /STK=2 /UG=Rn.50043 /UG_TITLE=ESTs, Highly similar to AF10_MOUSE AF-10 PROTEIN (M.musculus) BF396749 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 Mllt10 361285 NM_001012162 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1380447_a_at AI071722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071722 /DB_XREF=gi:3397937 /DB_XREF=UI-R-C2-nc-g-08-0-UI.s1 /CLONE=UI-R-C2-nc-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.20614.2 /TIER=ConsEnd /STK=2 /UG=Rn.20614 /UG_TITLE=ESTs, Weakly similar to T28894 hypothetical protein T14B4.2 - Caenorhabditis elegans (C.elegans) AI071722 mitochondrial ribosomal protein S18C Mrps18c 289469 NM_001105996 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005763 // mitochondrial small ribosomal subunit // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1380448_at AI112926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112926 /DB_XREF=gi:3512875 /DB_XREF=UI-R-A1-ep-g-10-0-UI.s1 /CLONE=UI-R-A1-ep-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.23627.1 /TIER=ConsEnd /STK=2 /UG=Rn.23627 /UG_TITLE=ESTs AI112926 alkB, alkylation repair homolog (E. coli) Alkbh 362766 NM_001108718 0006281 // DNA repair // inferred from electronic annotation 1380449_at AI112513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112513 /DB_XREF=gi:3512462 /DB_XREF=UI-R-Y0-mg-e-09-0-UI.s1 /CLONE=UI-R-Y0-mg-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.26797.1 /TIER=ConsEnd /STK=2 /UG=Rn.26797 /UG_TITLE=ESTs AI112513 1380450_at AI044632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044632 /DB_XREF=gi:3291493 /DB_XREF=UI-R-C1-kc-h-06-0-UI.s1 /CLONE=UI-R-C1-kc-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.15974.1 /TIER=ConsEnd /STK=2 /UG=Rn.15974 /UG_TITLE=ESTs AI044632 1380451_at AW915547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915547 /DB_XREF=gi:8081245 /DB_XREF=EST346851 /CLONE=RGICW62 /FEA=EST /CNT=3 /TID=Rn.19341.1 /TIER=ConsEnd /STK=2 /UG=Rn.19341 /UG_TITLE=ESTs AW915547 hypothetical protein LOC100364969 LOC100364969 100364969 XM_002725102 1380452_at AA964564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964564 /DB_XREF=gi:4279438 /DB_XREF=UI-R-E1-go-c-04-0-UI.s1 /CLONE=UI-R-E1-go-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.11844.1 /TIER=ConsEnd /STK=2 /UG=Rn.11844 /UG_TITLE=ESTs AA964564 1380453_at AW530611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530611 /DB_XREF=gi:7173025 /DB_XREF=UI-R-C4-ala-c-08-0-UI.s1 /CLONE=UI-R-C4-ala-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.42090.1 /TIER=ConsEnd /STK=2 /UG=Rn.42090 /UG_TITLE=ESTs AW530611 zinc finger, SWIM domain containing 5 Zswim5 313524 NM_001107963 0008270 // zinc ion binding // inferred from electronic annotation 1380454_at AI549209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549209 /DB_XREF=gi:4466697 /DB_XREF=UI-R-C3-tx-a-01-0-UI.s1 /CLONE=UI-R-C3-tx-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.43044.1 /TIER=ConsEnd /STK=2 /UG=Rn.43044 /UG_TITLE=ESTs AI549209 1380455_at BM389422 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389422 /DB_XREF=gi:18189475 /DB_XREF=UI-R-CN1-cjk-o-05-0-UI.s1 /CLONE=UI-R-CN1-cjk-o-05-0-UI /FEA=EST /CNT=3 /TID=Rn.29821.1 /TIER=ConsEnd /STK=2 /UG=Rn.29821 /UG_TITLE=ESTs BM389422 similar to RIKEN cDNA E330026B02 RGD1307220 315980 XM_001073278 1380456_at AI044224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044224 /DB_XREF=gi:3291127 /DB_XREF=UI-R-C1-kb-c-11-0-UI.s2 /CLONE=UI-R-C1-kb-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.23758.1 /TIER=ConsEnd /STK=2 /UG=Rn.23758 /UG_TITLE=ESTs AI044224 1380457_at AI178826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178826 /DB_XREF=gi:3729464 /DB_XREF=EST222508 /CLONE=RSPBP71 /FEA=EST /CNT=3 /TID=Rn.29256.1 /TIER=ConsEnd /STK=2 /UG=Rn.29256 /UG_TITLE=ESTs AI178826 1380458_at AA849609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849609 /DB_XREF=gi:2937149 /DB_XREF=EST192376 /CLONE=RMUAG80 /FEA=EST /CNT=3 /TID=Rn.3993.1 /TIER=ConsEnd /STK=2 /UG=Rn.3993 /UG_TITLE=ESTs AA849609 1380459_at AI555023 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555023 /DB_XREF=gi:4487386 /DB_XREF=UI-R-C2p-qv-b-06-0-UI.s1 /CLONE=UI-R-C2p-qv-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.27698.1 /TIER=ConsEnd /STK=2 /UG=Rn.27698 /UG_TITLE=ESTs AI555023 nucleus accumbens associated 2, BEN and BTB (POZ) domain containing Nacc2 296583 NM_001100533 0005515 // protein binding // inferred from electronic annotation 1380460_at AI602203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602203 /DB_XREF=gi:4611364 /DB_XREF=UI-R-AB0-vy-f-04-0-UI.s2 /CLONE=UI-R-AB0-vy-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.19612.1 /TIER=ConsEnd /STK=2 /UG=Rn.19612 /UG_TITLE=ESTs AI602203 similar to RIKEN cDNA 4931426K16 gene RGD1311267 311429 NM_001039024 0005737 // cytoplasm // inferred from electronic annotation /// 0009434 // microtubule-based flagellum // inferred from electronic annotation 1380461_at BF398551 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398551 /DB_XREF=gi:11383545 /DB_XREF=UI-R-BS2-beq-b-05-0-UI.s1 /CLONE=UI-R-BS2-beq-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.41991.1 /TIER=ConsEnd /STK=2 /UG=Rn.41991 /UG_TITLE=ESTs BF398551 1380462_at BF283078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283078 /DB_XREF=gi:11214148 /DB_XREF=EST447669 /CLONE=RGIDX21 /FEA=EST /CNT=3 /TID=Rn.13349.1 /TIER=ConsEnd /STK=2 /UG=Rn.13349 /UG_TITLE=ESTs BF283078 RGD1562146 RGD1562146 500612 XM_001056030 /// XM_580093 1380463_at AI102811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102811 /DB_XREF=gi:3704752 /DB_XREF=EST212100 /CLONE=REMBT16 /FEA=EST /CNT=3 /TID=Rn.48614.1 /TIER=ConsEnd /STK=2 /UG=Rn.48614 /UG_TITLE=ESTs, Weakly similar to cyclin G-associated kinase (Rattus norvegicus) (R.norvegicus) AI102811 AP2 associated kinase 1 Aak1 500244 NM_001173450 /// XM_001070331 /// XM_575594 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005905 // coated pit // inferred from electronic annotation /// 0071439 // clathrin complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1380464_at AI145031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145031 /DB_XREF=gi:3666830 /DB_XREF=UI-R-BT0-pr-g-08-0-UI.s1 /CLONE=UI-R-BT0-pr-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.23823.1 /TIER=ConsEnd /STK=2 /UG=Rn.23823 /UG_TITLE=ESTs AI145031 1380465_at AA965023 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965023 /DB_XREF=gi:4279897 /DB_XREF=UI-R-C0-gr-h-12-0-UI.s1 /CLONE=UI-R-C0-gr-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.23243.1 /TIER=ConsEnd /STK=2 /UG=Rn.23243 /UG_TITLE=ESTs AA965023 1380466_at BG670778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670778 /DB_XREF=gi:13892877 /DB_XREF=DRNBFD11 /CLONE=DRNBFD11 /FEA=EST /CNT=3 /TID=Rn.14723.1 /TIER=ConsEnd /STK=2 /UG=Rn.14723 /UG_TITLE=ESTs BG670778 1380467_at AI556510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556510 /DB_XREF=gi:4488873 /DB_XREF=UI-R-C2p-rl-a-01-0-UI.s1 /CLONE=UI-R-C2p-rl-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.43481.1 /TIER=ConsEnd /STK=2 /UG=Rn.43481 /UG_TITLE=ESTs AI556510 solute carrier family 16, member 1 (monocarboxylic acid transporter 1) Slc16a1 25027 NM_012716 0006810 // transport // inferred from electronic annotation /// 0015711 // organic anion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0015355 // secondary active monocarboxylate transmembrane transporter activity // inferred from electronic annotation 1380468_a_at AI012603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012603 /DB_XREF=gi:3226435 /DB_XREF=EST207054 /CLONE=RPLAZ44 /FEA=EST /CNT=3 /TID=Rn.33232.1 /TIER=ConsEnd /STK=2 /UG=Rn.33232 /UG_TITLE=ESTs AI012603 1380469_at AI012603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012603 /DB_XREF=gi:3226435 /DB_XREF=EST207054 /CLONE=RPLAZ44 /FEA=EST /CNT=3 /TID=Rn.33232.1 /TIER=ConsEnd /STK=2 /UG=Rn.33232 /UG_TITLE=ESTs AI012603 1380470_x_at BE105961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105961 /DB_XREF=gi:8498063 /DB_XREF=UI-R-BX0-asc-c-04-0-UI.s1 /CLONE=UI-R-BX0-asc-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.37273.1 /TIER=ConsEnd /STK=2 /UG=Rn.37273 /UG_TITLE=ESTs BE105961 1380471_at H31701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31701 /DB_XREF=gi:977118 /DB_XREF=EST106022 /CLONE=RPCAW46 /FEA=EST /CNT=3 /TID=Rn.48830.1 /TIER=ConsEnd /STK=2 /UG=Rn.48830 /UG_TITLE=ESTs H31701 1380472_at AI639486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639486 /DB_XREF=gi:4700520 /DB_XREF=rx02551s /CLONE=rx02551 /FEA=EST /CNT=3 /TID=Rn.43705.1 /TIER=ConsEnd /STK=2 /UG=Rn.43705 /UG_TITLE=ESTs, Weakly similar to JC5408 carboxylesterase (H.sapiens) AI639486 similar to carboxylesterase 5 LOC679368 679368 XM_001056053 1380473_at AW529772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529772 /DB_XREF=gi:7172186 /DB_XREF=UI-R-BU0-amt-b-04-0-UI.s1 /CLONE=UI-R-BU0-amt-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.44913.1 /TIER=ConsEnd /STK=2 /UG=Rn.44913 /UG_TITLE=ESTs AW529772 1380474_at AI013470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013470 /DB_XREF=gi:4133876 /DB_XREF=EST208145 /CLONE=RSPBL93 /FEA=EST /CNT=3 /TID=Rn.36180.1 /TIER=ConsEnd /STK=2 /UG=Rn.36180 /UG_TITLE=ESTs AI013470 Lysyl oxidase-like 2 Loxl2 290350 NM_001106047 0055114 // oxidation reduction // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from electronic annotation /// 0016641 // oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor // inferred from electronic annotation 1380475_at BE096160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096160 /DB_XREF=gi:8487091 /DB_XREF=UI-R-BU0-apj-f-12-0-UI.s1 /CLONE=UI-R-BU0-apj-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.49405.1 /TIER=ConsEnd /STK=2 /UG=Rn.49405 /UG_TITLE=ESTs, Highly similar to T00377 KIAA0642 protein (H.sapiens) BE096160 rCG23949-like LOC100362458 100362458 XR_086345 /// XR_086664 1380476_at AI715469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715469 /DB_XREF=gi:5032722 /DB_XREF=UI-R-Y0-abm-h-09-0-UI.s1 /CLONE=UI-R-Y0-abm-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.40786.1 /TIER=ConsEnd /STK=2 /UG=Rn.40786 /UG_TITLE=ESTs AI715469 DnaJ (Hsp40) homolog, subfamily C, member 1-like LOC100360412 100360412 XM_002728514 1380477_at BE112382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112382 /DB_XREF=gi:8504487 /DB_XREF=UI-R-BJ1-avm-a-06-0-UI.s1 /CLONE=UI-R-BJ1-avm-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.42086.1 /TIER=ConsEnd /STK=2 /UG=Rn.42086 /UG_TITLE=ESTs BE112382 1380478_at AW533633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533633 /DB_XREF=gi:7176047 /DB_XREF=UI-R-BU0-anj-c-02-0-UI.s1 /CLONE=UI-R-BU0-anj-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.48644.1 /TIER=ConsEnd /STK=2 /UG=Rn.48644 /UG_TITLE=ESTs, Highly similar to S68517 nuclear hormone receptor RORalpha - mouse (M.musculus) AW533633 1380479_at H31590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31590 /DB_XREF=gi:977007 /DB_XREF=EST105767 /CLONE=RPCAR52 /FEA=EST /CNT=3 /TID=Rn.14574.1 /TIER=ConsEnd /STK=2 /UG=Rn.14574 /UG_TITLE=ESTs H31590 1380480_at AI711263 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711263 /DB_XREF=gi:5001039 /DB_XREF=UI-R-AA1-zv-b-02-0-UI.s1 /CLONE=UI-R-AA1-zv-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.41459.1 /TIER=ConsEnd /STK=2 /UG=Rn.41459 /UG_TITLE=ESTs, Moderately similar to PLCC_HUMAN 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE GAMMA (1-AGP ACYLTRANSFERASE 3) (1-AGPAT 3) (LYSOPHOSPHATIDIC ACID ACYLTRANSFERASE-GAMMA) (LPAAT-GAMMA) (1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE 3) (H.sapiens) AI711263 1-acylglycerol-3-phosphate O-acyltransferase 3 Agpat3 294324 NM_001106378 0008152 // metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0008415 // acyltransferase activity // inferred from electronic annotation /// 0046027 // phospholipid:diacylglycerol acyltransferase activity // not recorded 1380481_at BG670805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670805 /DB_XREF=gi:13892904 /DB_XREF=DRNBFG12 /CLONE=DRNBFG12 /FEA=EST /CNT=3 /TID=Rn.43227.1 /TIER=ConsEnd /STK=2 /UG=Rn.43227 /UG_TITLE=ESTs BG670805 1380482_at AI175691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175691 /DB_XREF=gi:3726329 /DB_XREF=EST219252 /CLONE=ROVBD82 /FEA=EST /CNT=3 /TID=Rn.34647.1 /TIER=ConsEnd /STK=2 /UG=Rn.34647 /UG_TITLE=ESTs AI175691 1380483_at BI300942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300942 /DB_XREF=gi:14977222 /DB_XREF=UI-R-CV2-cil-g-04-0-UI.s1 /CLONE=UI-R-CV2-cil-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.69724.1 /TIER=ConsEnd /STK=2 /UG=Rn.69724 /UG_TITLE=ESTs, Weakly similar to CN8A MOUSE HIGH-AFFINITY CAMP-SPECIFIC AND IBMX-INSENSITIVE 3,5-CYCLIC PHOSPHODIESTERASE 8A (M.musculus) BI300942 phosphodiesterase 8B Pde8b 309962 NM_199268 0000160 // two-component signal transduction system (phosphorelay) // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0046676 // negative regulation of insulin secretion // inferred from mutant phenotype 0000156 // two-component response regulator activity // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380484_at AI044661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044661 /DB_XREF=gi:3291522 /DB_XREF=UI-R-C1-jx-e-12-0-UI.s1 /CLONE=UI-R-C1-jx-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.25179.1 /TIER=ConsEnd /STK=2 /UG=Rn.25179 /UG_TITLE=ESTs AI044661 peptidase inhibitor 16 Pi16 294312 NM_001170481 0005576 // extracellular region // inferred from electronic annotation 1380485_at BE106894 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106894 /DB_XREF=gi:8498996 /DB_XREF=UI-R-BT1-asu-d-10-0-UI.s1 /CLONE=UI-R-BT1-asu-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.27220.1 /TIER=ConsEnd /STK=2 /UG=Rn.27220 /UG_TITLE=ESTs BE106894 Coiled-coil domain containing 71 Ccdc71 498678 NM_001024904 1380486_at BM383047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383047 /DB_XREF=gi:18183100 /DB_XREF=UI-R-DS0-cje-m-17-0-UI.s1 /CLONE=UI-R-DS0-cje-m-17-0-UI /FEA=EST /CNT=3 /TID=Rn.48346.1 /TIER=ConsEnd /STK=2 /UG=Rn.48346 /UG_TITLE=ESTs BM383047 similar to SEC22 vesicle trafficking protein-like 3 LOC687022 687022 XM_001078538 0016192 // vesicle-mediated transport // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 1380487_at BE105524 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105524 /DB_XREF=gi:8497626 /DB_XREF=UI-R-BX0-arv-g-06-0-UI.s1 /CLONE=UI-R-BX0-arv-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.50789.1 /TIER=ConsEnd /STK=2 /UG=Rn.50789 /UG_TITLE=ESTs BE105524 1380488_at BF414581 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414581 /DB_XREF=gi:11402570 /DB_XREF=UI-R-CA0-bpb-d-05-0-UI.s1 /CLONE=UI-R-CA0-bpb-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.62575.1 /TIER=ConsEnd /STK=2 /UG=Rn.62575 /UG_TITLE=ESTs BF414581 ARP8 actin-related protein 8 homolog (yeast) Actr8 361107 NM_001108396 0005515 // protein binding // inferred from electronic annotation 1380489_at BF389269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389269 /DB_XREF=gi:11374099 /DB_XREF=UI-R-BS2-bdi-h-01-0-UI.s1 /CLONE=UI-R-BS2-bdi-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.63960.1 /TIER=ConsEnd /STK=2 /UG=Rn.63960 /UG_TITLE=ESTs BF389269 1380490_at AW434884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434884 /DB_XREF=gi:6966191 /DB_XREF=UI-R-BJ0p-afg-b-11-0-UI.s1 /CLONE=UI-R-BJ0p-afg-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.27148.1 /TIER=ConsEnd /STK=2 /UG=Rn.27148 /UG_TITLE=ESTs, Weakly similar to T46501 hypothetical protein DKFZp434A179.1 (H.sapiens) AW434884 similar to Importin-8 (Imp8) (Ran-binding protein 8) (RanBP8) LOC686774 686774 XR_085827 1380491_at BF402629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402629 /DB_XREF=gi:11390604 /DB_XREF=UI-R-CA0-bhm-g-01-0-UI.s1 /CLONE=UI-R-CA0-bhm-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.60090.1 /TIER=ConsEnd /STK=2 /UG=Rn.60090 /UG_TITLE=ESTs BF402629 1380492_at BF415213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415213 /DB_XREF=gi:11403202 /DB_XREF=UI-R-BJ2-boz-c-07-0-UI.s1 /CLONE=UI-R-BJ2-boz-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.62653.1 /TIER=ConsEnd /STK=2 /UG=Rn.62653 /UG_TITLE=ESTs, Weakly similar to T42730 Bassoon protein - mouse (M.musculus) BF415213 frequenin homolog (Drosophila) Freq 65153 NM_024366 0010975 // regulation of neuron projection development // inferred from mutant phenotype /// 0045921 // positive regulation of exocytosis // inferred from direct assay /// 0048015 // phosphoinositide-mediated signaling // inferred from direct assay /// 0051927 // negative regulation of calcium ion transport via voltage-gated calcium channel activity // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0031045 // dense core granule // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005509 // calcium ion binding // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008427 // calcium-dependent protein kinase inhibitor activity // traceable author statement 1380493_at AW531643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531643 /DB_XREF=gi:7174057 /DB_XREF=UI-R-C4-aky-c-11-0-UI.s1 /CLONE=UI-R-C4-aky-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.22021.1 /TIER=ConsEnd /STK=2 /UG=Rn.22021 /UG_TITLE=ESTs AW531643 tet oncogene family member 3 Tet3 680576 XM_001057850 /// XM_002726424 1380494_at BG379580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379580 /DB_XREF=gi:13304052 /DB_XREF=UI-R-CS0-bti-f-04-0-UI.s1 /CLONE=UI-R-CS0-bti-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.45300.1 /TIER=ConsEnd /STK=2 /UG=Rn.45300 /UG_TITLE=ESTs BG379580 1380495_at AA964947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964947 /DB_XREF=gi:4279821 /DB_XREF=UI-R-C0-hb-a-09-0-UI.s1 /CLONE=UI-R-C0-hb-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.40818.1 /TIER=ConsEnd /STK=2 /UG=Rn.40818 /UG_TITLE=ESTs AA964947 WD repeat domain 78 Wdr78 313417 NM_001024786 1380496_at BF543485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543485 /DB_XREF=gi:11634592 /DB_XREF=UI-R-C3-sz-d-12-0-UI.r1 /CLONE=UI-R-C3-sz-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.44966.1 /TIER=ConsEnd /STK=2 /UG=Rn.44966 /UG_TITLE=ESTs, Highly similar to Y126_HUMAN HYPOTHETICAL PROTEIN KIAA0126 (H.sapiens) BF543485 ubiquitination factor E4A (UFD2 homolog, yeast) Ube4a 315608 NM_207610 0000209 // protein polyubiquitination // inferred from electronic annotation /// 0000209 // protein polyubiquitination // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0034450 // ubiquitin-ubiquitin ligase activity // inferred from electronic annotation /// 0034450 // ubiquitin-ubiquitin ligase activity // not recorded 1380497_at AW521174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521174 /DB_XREF=gi:7163552 /DB_XREF=UI-R-BO0-agk-b-08-0-UI.s1 /CLONE=UI-R-BO0-agk-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.72994.1 /TIER=ConsEnd /STK=2 /UG=Rn.72994 /UG_TITLE=ESTs, Weakly similar to S71490 ash1 protein - fruit fly (D.melanogaster) AW521174 ash1 (absent, small, or homeotic)-like (Drosophila) Ash1l 310638 NM_001107689 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380498_at AW141174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141174 /DB_XREF=gi:6160954 /DB_XREF=EST291210 /CLONE=RGIBE61 /FEA=EST /CNT=3 /TID=Rn.40461.1 /TIER=ConsEnd /STK=2 /UG=Rn.40461 /UG_TITLE=ESTs, Highly similar to JC6127 RNA-binding protein type 1 (H.sapiens) AW141174 similar to RNA binding protein gene with multiple splicing RGD1561067 498642 XM_001059526 /// XM_573923 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1380499_at AI029043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029043 /DB_XREF=gi:4295833 /DB_XREF=UI-R-C0-ik-e-04-0-UI.s1 /CLONE=UI-R-C0-ik-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.33257.1 /TIER=ConsEnd /STK=2 /UG=Rn.33257 /UG_TITLE=ESTs AI029043 1380500_s_at BF561706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561706 /DB_XREF=gi:11671436 /DB_XREF=UI-R-C0-ib-h-09-0-UI.r1 /CLONE=UI-R-C0-ib-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.65866.1 /TIER=ConsEnd /STK=2 /UG=Rn.65866 /UG_TITLE=ESTs, Highly similar to FK506-BINDING PROTEIN PRECURSOR (M.musculus) BF561706 FK506 binding protein 2 Fkbp2 293702 NM_001134428 /// NM_001134429 0006457 // protein folding // inferred from electronic annotation 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation 1380501_x_at BF561706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561706 /DB_XREF=gi:11671436 /DB_XREF=UI-R-C0-ib-h-09-0-UI.r1 /CLONE=UI-R-C0-ib-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.65866.1 /TIER=ConsEnd /STK=2 /UG=Rn.65866 /UG_TITLE=ESTs, Highly similar to FK506-BINDING PROTEIN PRECURSOR (M.musculus) BF561706 FK506 binding protein 2 Fkbp2 293702 NM_001134428 /// NM_001134429 0006457 // protein folding // inferred from electronic annotation 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation 1380502_at AI059733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059733 /DB_XREF=gi:3333510 /DB_XREF=UI-R-C1-lk-e-09-0-UI.s1 /CLONE=UI-R-C1-lk-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.64359.1 /TIER=ConsEnd /STK=2 /UG=Rn.64359 /UG_TITLE=ESTs, Weakly similar to S33926 Wilms tumor protein WT1 - rat (R.norvegicus) AI059733 Zic family member 2 (odd-paired homolog, Drosophila) Zic2 361096 NM_001108392 0001843 // neural tube closure // not recorded /// 0007399 // nervous system development // not recorded /// 0007417 // central nervous system development // not recorded /// 0030154 // cell differentiation // not recorded /// 0048066 // developmental pigmentation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1380503_at BI290590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290590 /DB_XREF=gi:14949303 /DB_XREF=UI-R-DK0-cfx-a-06-0-UI.s1 /CLONE=UI-R-DK0-cfx-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.32851.1 /TIER=ConsEnd /STK=2 /UG=Rn.32851 /UG_TITLE=ESTs BI290590 family with sequence similarity 193, member A Fam193a 305452 XM_002724985 /// XM_223536 1380504_at BI282488 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282488 /DB_XREF=gi:14933306 /DB_XREF=UI-R-DD0-bzx-d-09-0-UI.s1 /CLONE=UI-R-DD0-bzx-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.38150.1 /TIER=ConsEnd /STK=2 /UG=Rn.38150 /UG_TITLE=ESTs BI282488 Acetyl-Coenzyme A acyltransferase 2 Acaa2 170465 NM_130433 0006084 // acetyl-CoA metabolic process // inferred from direct assay /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // non-traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0003988 // acetyl-CoA C-acyltransferase activity // inferred from direct assay /// 0003988 // acetyl-CoA C-acyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation 1380505_at BF563556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563556 /DB_XREF=gi:11673286 /DB_XREF=UI-R-C4-alg-g-11-0-UI.r1 /CLONE=UI-R-C4-alg-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.44936.1 /TIER=ConsEnd /STK=2 /UG=Rn.44936 /UG_TITLE=ESTs BF563556 1380506_at AI043604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043604 /DB_XREF=gi:3290930 /DB_XREF=UI-R-C1-jv-b-08-0-UI.s1 /CLONE=UI-R-C1-jv-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.41339.1 /TIER=ConsEnd /STK=2 /UG=Rn.41339 /UG_TITLE=ESTs AI043604 1380507_at BF283420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283420 /DB_XREF=gi:11214490 /DB_XREF=EST448011 /CLONE=RGIEB78 /FEA=EST /CNT=3 /TID=Rn.43626.1 /TIER=ConsEnd /STK=2 /UG=Rn.43626 /UG_TITLE=ESTs BF283420 1380508_at BF411528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411528 /DB_XREF=gi:11399517 /DB_XREF=UI-R-BT1-bmt-a-02-0-UI.s1 /CLONE=UI-R-BT1-bmt-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.64342.1 /TIER=ConsEnd /STK=2 /UG=Rn.64342 /UG_TITLE=ESTs BF411528 1380509_at AW253985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253985 /DB_XREF=gi:6597576 /DB_XREF=UI-R-BJ0-aed-g-02-0-UI.s1 /CLONE=UI-R-BJ0-aed-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.40916.1 /TIER=ConsEnd /STK=2 /UG=Rn.40916 /UG_TITLE=ESTs, Weakly similar to HXA3 MOUSE HOMEOBOX PROTEIN HOX-A3 (M.musculus) AW253985 zinc finger protein 771 Znf771 308992 XM_219346 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1380510_at BF553029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF553029 /DB_XREF=gi:11662759 /DB_XREF=UI-R-C2-ng-h-12-0-UI.r1 /CLONE=UI-R-C2-ng-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.40427.1 /TIER=ConsEnd /STK=2 /UG=Rn.40427 /UG_TITLE=ESTs BF553029 1380511_at AA899471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899471 /DB_XREF=gi:4231969 /DB_XREF=UI-R-E0-de-b-03-0-UI.s1 /CLONE=UI-R-E0-de-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.14937.1 /TIER=ConsEnd /STK=2 /UG=Rn.14937 /UG_TITLE=ESTs AA899471 Parvin, beta Parvb 362973 NM_001134780 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded 1380512_at AI044125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044125 /DB_XREF=gi:3291028 /DB_XREF=UI-R-C1-jv-g-04-0-UI.s1 /CLONE=UI-R-C1-jv-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.20731.1 /TIER=ConsEnd /STK=2 /UG=Rn.20731 /UG_TITLE=ESTs AI044125 dipeptidase 2 Dpep2 291984 NM_001011928 0006508 // proteolysis // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0042730 // fibrinolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008235 // metalloexopeptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008238 // exopeptidase activity // not recorded /// 0008238 // exopeptidase activity // inferred from electronic annotation /// 0008239 // dipeptidyl-peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016805 // dipeptidase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380513_at BE095638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095638 /DB_XREF=gi:8486569 /DB_XREF=UI-R-BO1-apo-d-10-0-UI.s1 /CLONE=UI-R-BO1-apo-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.49042.1 /TIER=ConsEnd /STK=2 /UG=Rn.49042 /UG_TITLE=ESTs BE095638 RNA polymerase II associated protein 2 Rpap2 305120 NM_001013987 0005634 // nucleus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380514_at AI059926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059926 /DB_XREF=gi:3333703 /DB_XREF=UI-R-C1-kr-e-03-0-UI.s1 /CLONE=UI-R-C1-kr-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.21158.1 /TIER=ConsEnd /STK=2 /UG=Rn.21158 /UG_TITLE=ESTs, Highly similar to ZIC4 MOUSE ZINC FINGER PROTEIN ZIC4 (M.musculus) AI059926 Zic family member 4 Zic4 315882 NM_001108176 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1380515_at AI170730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170730 /DB_XREF=gi:3710770 /DB_XREF=EST216668 /CLONE=RMUBA67 /FEA=EST /CNT=3 /TID=Rn.28442.1 /TIER=ConsEnd /STK=2 /UG=Rn.28442 /UG_TITLE=ESTs AI170730 Bardet-Biedl syndrome 7 Bbs7 361930 NM_001012180 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045444 // fat cell differentiation // not recorded 0034464 // BBSome // inferred from electronic annotation /// 0034464 // BBSome // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1380516_at AI548785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548785 /DB_XREF=gi:4466273 /DB_XREF=UI-R-C3-tr-f-03-0-UI.s1 /CLONE=UI-R-C3-tr-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.33181.1 /TIER=ConsEnd /STK=2 /UG=Rn.33181 /UG_TITLE=ESTs AI548785 ataxin 2 binding protein 1 A2bp1 302920 NM_001106974 0005737 // cytoplasm // not recorded /// 0005802 // trans-Golgi network // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded 1380517_at BI288315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288315 /DB_XREF=gi:14944781 /DB_XREF=UI-R-DK0-ccz-e-03-0-UI.s1 /CLONE=UI-R-DK0-ccz-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.35398.1 /TIER=ConsEnd /STK=2 /UG=Rn.35398 /UG_TITLE=ESTs, Highly similar to Z261_HUMAN ZINC FINGER PROTEIN 261 (DXS6673E PROTEIN) (H.sapiens) BI288315 zinc finger, MYM-type 3 Zmym3 317260 NM_001040155 0008270 // zinc ion binding // inferred from electronic annotation 1380518_s_at AA997529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997529 /DB_XREF=gi:4284299 /DB_XREF=UI-R-C0-hw-h-12-0-UI.s1 /CLONE=UI-R-C0-hw-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.37618.1 /TIER=ConsEnd /STK=2 /UG=Rn.37618 /UG_TITLE=ESTs AA997529 thyroid hormone receptor alpha Thra 81812 NM_001017960 /// NM_031134 0001502 // cartilage condensation // not recorded /// 0001502 // cartilage condensation // inferred from electronic annotation /// 0001503 // ossification // not recorded /// 0001503 // ossification // inferred from electronic annotation /// 0001822 // kidney development // inferred from expression pattern /// 0001889 // liver development // inferred from expression pattern /// 0002155 // regulation of thyroid hormone mediated signaling pathway // not recorded /// 0002155 // regulation of thyroid hormone mediated signaling pathway // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006950 // response to stress // inferred from expression pattern /// 0007165 // signal transduction // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0007611 // learning or memory // not recorded /// 0007611 // learning or memory // inferred from electronic annotation /// 0008016 // regulation of heart contraction // not recorded /// 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0008050 // female courtship behavior // not recorded /// 0008050 // female courtship behavior // inferred from electronic annotation /// 0009409 // response to cold // not recorded /// 0009409 // response to cold // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0009755 // hormone-mediated signaling pathway // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010831 // positive regulation of myotube differentiation // not recorded /// 0010831 // positive regulation of myotube differentiation // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0017055 // negative regulation of RNA polymerase II transcriptional preinitiation complex assembly // not recorded /// 0017055 // negative regulation of RNA polymerase II transcriptional preinitiation complex assembly // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // not recorded /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030324 // lung development // inferred from expression pattern /// 0030325 // adrenal gland development // inferred from expression pattern /// 0030878 // thyroid gland development // not recorded /// 0030878 // thyroid gland development // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0033032 // regulation of myeloid cell apoptosis // not recorded /// 0033032 // regulation of myeloid cell apoptosis // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042994 // cytoplasmic sequestering of transcription factor // not recorded /// 0042994 // cytoplasmic sequestering of transcription factor // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045925 // positive regulation of female receptivity // not recorded /// 0045925 // positive regulation of female receptivity // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0048565 // digestive tract development // inferred from expression pattern /// 0048568 // embryonic organ development // inferred from expression pattern /// 0050994 // regulation of lipid catabolic process // not recorded /// 0050994 // regulation of lipid catabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0002153 // steroid receptor RNA activator RNA binding // not recorded /// 0002153 // steroid receptor RNA activator RNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0003727 // single-stranded RNA binding // inferred from direct assay /// 0003727 // single-stranded RNA binding // not recorded /// 0003727 // single-stranded RNA binding // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // not recorded /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0004887 // thyroid hormone receptor activity // inferred from direct assay /// 0004887 // thyroid hormone receptor activity // not recorded /// 0004887 // thyroid hormone receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016988 // transcription initiation factor antagonist activity // not recorded /// 0016988 // transcription initiation factor antagonist activity // inferred from electronic annotation /// 0017025 // TATA-binding protein binding // not recorded /// 0017025 // TATA-binding protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0044213 // intronic transcription regulatory region DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0070324 // thyroid hormone binding // not recorded /// 0070324 // thyroid hormone binding // inferred from electronic annotation 1380519_at AI010831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010831 /DB_XREF=gi:4133309 /DB_XREF=EST205282 /CLONE=RMUAT08 /FEA=EST /CNT=3 /TID=Rn.37634.1 /TIER=ConsEnd /STK=2 /UG=Rn.37634 /UG_TITLE=ESTs AI010831 similar to RIKEN cDNA 4832428D23 gene RGD1561425 301378 NM_001106908 1380520_at BI295810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295810 /DB_XREF=gi:14959630 /DB_XREF=UI-R-DK0-cfa-h-08-0-UI.s1 /CLONE=UI-R-DK0-cfa-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.76710.1 /TIER=ConsEnd /STK=2 /UG=Rn.76710 /UG_TITLE=ESTs BI295810 1380521_at BF556183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556183 /DB_XREF=gi:11665913 /DB_XREF=UI-R-A1-ec-a-03-0-UI.r1 /CLONE=UI-R-A1-ec-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.15578.1 /TIER=ConsEnd /STK=2 /UG=Rn.15578 /UG_TITLE=ESTs BF556183 hematopoietic cell specific Lyn substrate 1 Hcls1 288077 NM_001011898 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0009725 // response to hormone stimulus // not recorded /// 0009725 // response to hormone stimulus // inferred from sequence or structural similarity /// 0009725 // response to hormone stimulus // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // not recorded /// 0030218 // erythrocyte differentiation // inferred from sequence or structural similarity /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0042531 // positive regulation of tyrosine phosphorylation of STAT protein // not recorded /// 0042531 // positive regulation of tyrosine phosphorylation of STAT protein // inferred from sequence or structural similarity /// 0042531 // positive regulation of tyrosine phosphorylation of STAT protein // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded /// 0032403 // protein complex binding // inferred from electronic annotation /// 0032403 // protein complex binding // not recorded 1380522_at AI060201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060201 /DB_XREF=gi:3333978 /DB_XREF=UI-R-C1-lm-b-01-0-UI.s1 /CLONE=UI-R-C1-lm-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.19391.1 /TIER=ConsEnd /STK=2 /UG=Rn.19391 /UG_TITLE=ESTs AI060201 1380523_at AI145917 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145917 /DB_XREF=gi:3667716 /DB_XREF=UI-R-BT0-qc-a-04-0-UI.s1 /CLONE=UI-R-BT0-qc-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.24143.1 /TIER=ConsEnd /STK=2 /UG=Rn.24143 /UG_TITLE=ESTs AI145917 F-box protein 15 Fbxo15 361354 NM_001108436 1380524_at AA997356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997356 /DB_XREF=gi:4280879 /DB_XREF=UI-R-C0-hl-c-02-0-UI.s1 /CLONE=UI-R-C0-hl-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.12519.1 /TIER=ConsEnd /STK=2 /UG=Rn.12519 /UG_TITLE=ESTs AA997356 keratin 86 Krt86 407760 NM_001008810 0005882 // intermediate filament // inferred from electronic annotation /// 0045095 // keratin filament // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 1380525_at AA849862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849862 /DB_XREF=gi:4131770 /DB_XREF=EST192629 /CLONE=RMUAJ83 /FEA=EST /CNT=3 /TID=Rn.79118.1 /TIER=ConsEnd /STK=2 /UG=Rn.79118 /UG_TITLE=ESTs AA849862 arylsulfatase E (chondrodysplasia punctata 1) Arse 310326 NM_001047885 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004065 // arylsulfatase activity // inferred from electronic annotation /// 0008484 // sulfuric ester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1380526_at AI029435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029435 /DB_XREF=gi:4298542 /DB_XREF=UI-R-C0-ir-c-05-0-UI.s1 /CLONE=UI-R-C0-ir-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.23487.1 /TIER=ConsEnd /STK=2 /UG=Rn.23487 /UG_TITLE=ESTs, Moderately similar to GCDH MOUSE GLUTARYL-COA DEHYDROGENASE PRECURSOR (M.musculus) AI029435 glutaryl-Coenzyme A dehydrogenase Gcdh 364975 NM_001108896 0006637 // acyl-CoA metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0019395 // fatty acid oxidation // inferred from direct assay /// 0046949 // fatty-acyl-CoA biosynthetic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded 0000062 // acyl-CoA binding // inferred from direct assay /// 0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0004361 // glutaryl-CoA dehydrogenase activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from direct assay /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1380527_at AI454790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454790 /DB_XREF=gi:4296189 /DB_XREF=UI-R-C2p-qm-d-03-0-UI.s1 /CLONE=UI-R-C2p-qm-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.41125.1 /TIER=ConsEnd /STK=2 /UG=Rn.41125 /UG_TITLE=ESTs AI454790 1380528_at AI407573 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407573 /DB_XREF=gi:4251077 /DB_XREF=EST235863 /CLONE=ROVDZ59 /FEA=EST /CNT=3 /TID=Rn.43715.1 /TIER=ConsEnd /STK=2 /UG=Rn.43715 /UG_TITLE=ESTs AI407573 1380529_at AI059721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059721 /DB_XREF=gi:3333498 /DB_XREF=UI-R-C1-lk-c-12-0-UI.s1 /CLONE=UI-R-C1-lk-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.38747.1 /TIER=ConsEnd /STK=2 /UG=Rn.38747 /UG_TITLE=ESTs, Weakly similar to T31425 C-terminal domain-binding protein rA4, splice form 2 - rat (fragment) (R.norvegicus) AI059721 1380530_at BF568014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF568014 /DB_XREF=gi:11677744 /DB_XREF=UI-R-BO0-ahy-a-05-0-UI.r1 /CLONE=UI-R-BO0-ahy-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.49067.1 /TIER=ConsEnd /STK=2 /UG=Rn.49067 /UG_TITLE=ESTs BF568014 mastermind like 2 (Drosophila) Maml2 689844 XM_001072241 /// XM_002726984 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007219 // Notch signaling pathway // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded 1380531_at AI102178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102178 /DB_XREF=gi:3706986 /DB_XREF=EST211467 /CLONE=RBRCA22 /FEA=EST /CNT=3 /TID=Rn.23902.1 /TIER=ConsEnd /STK=2 /UG=Rn.23902 /UG_TITLE=ESTs AI102178 solute carrier family 9 (sodium/hydrogen exchanger), isoform 9 Slc9a9 363115 XM_001064905 /// XM_002729941 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006885 // regulation of pH // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0015297 // antiporter activity // inferred from electronic annotation /// 0015299 // solute:hydrogen antiporter activity // inferred from electronic annotation /// 0015385 // sodium:hydrogen antiporter activity // inferred from electronic annotation 1380532_at BF552738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552738 /DB_XREF=gi:11662468 /DB_XREF=UI-R-C0-iy-e-02-0-UI.r1 /CLONE=UI-R-C0-iy-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.40780.1 /TIER=ConsEnd /STK=2 /UG=Rn.40780 /UG_TITLE=ESTs BF552738 DnaJ (Hsp40) homolog, subfamily B, member 2 Dnajb2 689593 NM_001109541 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0030308 // negative regulation of cell growth // not recorded /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from sequence or structural similarity /// 0030433 // ER-associated protein catabolic process // not recorded /// 0030433 // ER-associated protein catabolic process // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0031398 // positive regulation of protein ubiquitination // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0090084 // negative regulation of inclusion body assembly // not recorded /// 0090084 // negative regulation of inclusion body assembly // inferred from electronic annotation /// 0090086 // negative regulation of protein deubiquitination // not recorded /// 0090086 // negative regulation of protein deubiquitination // inferred from electronic annotation 0000502 // proteasome complex // not recorded /// 0000502 // proteasome complex // inferred from electronic annotation /// 0016234 // inclusion body // not recorded /// 0016234 // inclusion body // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // not recorded /// 0030544 // Hsp70 protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0031593 // polyubiquitin binding // not recorded /// 0031593 // polyubiquitin binding // inferred from electronic annotation /// 0070628 // proteasome binding // not recorded /// 0070628 // proteasome binding // inferred from electronic annotation 1380533_at AI408064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408064 /DB_XREF=gi:4251568 /DB_XREF=EST236354 /CLONE=RPLDM14 /FEA=EST /CNT=3 /TID=Rn.43525.1 /TIER=ConsEnd /STK=2 /UG=Rn.43525 /UG_TITLE=ESTs, Highly similar to A4 RAT ALZHEIMERS DISEASE AMYLOID A4 PROTEIN HOMOLOG PRECURSOR (R.norvegicus) AI408064 amyloid beta (A4) precursor protein App 54226 NM_019288 0000085 // G2 phase of mitotic cell cycle // not recorded /// 0000085 // G2 phase of mitotic cell cycle // inferred from sequence or structural similarity /// 0000085 // G2 phase of mitotic cell cycle // inferred from electronic annotation /// 0001967 // suckling behavior // inferred from electronic annotation /// 0001967 // suckling behavior // not recorded /// 0006378 // mRNA polyadenylation // not recorded /// 0006378 // mRNA polyadenylation // inferred from sequence or structural similarity /// 0006378 // mRNA polyadenylation // inferred from electronic annotation /// 0006417 // regulation of translation // not recorded /// 0006417 // regulation of translation // inferred from sequence or structural similarity /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006878 // cellular copper ion homeostasis // not recorded /// 0006878 // cellular copper ion homeostasis // inferred from sequence or structural similarity /// 0006878 // cellular copper ion homeostasis // inferred from electronic annotation /// 0006897 // endocytosis // not recorded /// 0006897 // endocytosis // inferred from sequence or structural similarity /// 0006897 // endocytosis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from direct assay /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007176 // regulation of epidermal growth factor receptor activity // not recorded /// 0007176 // regulation of epidermal growth factor receptor activity // inferred from sequence or structural similarity /// 0007176 // regulation of epidermal growth factor receptor activity // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from sequence or structural similarity /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007617 // mating behavior // not recorded /// 0007617 // mating behavior // inferred from sequence or structural similarity /// 0007617 // mating behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0007626 // locomotory behavior // inferred from sequence or structural similarity /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0008088 // axon cargo transport // not recorded /// 0008088 // axon cargo transport // inferred from sequence or structural similarity /// 0008088 // axon cargo transport // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0008344 // adult locomotory behavior // inferred from sequence or structural similarity /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0008542 // visual learning // inferred from sequence or structural similarity /// 0008542 // visual learning // inferred from electronic annotation /// 0016199 // axon midline choice point recognition // not recorded /// 0016199 // axon midline choice point recognition // inferred from sequence or structural similarity /// 0016199 // axon midline choice point recognition // inferred from electronic annotation /// 0016322 // neuron remodeling // not recorded /// 0016322 // neuron remodeling // inferred from sequence or structural similarity /// 0016322 // neuron remodeling // inferred from electronic annotation /// 0016358 // dendrite development // not recorded /// 0016358 // dendrite development // inferred from sequence or structural similarity /// 0016358 // dendrite development // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030198 // extracellular matrix organization // inferred from sequence or structural similarity /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0031175 // neuron projection development // not recorded /// 0031175 // neuron projection development // inferred from sequence or structural similarity /// 0031175 // neuron projection development // inferred from electronic annotation /// 0035235 // ionotropic glutamate receptor signaling pathway // not recorded /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from sequence or structural similarity /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from sequence or structural similarity /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // not recorded /// 0045931 // positive regulation of mitotic cell cycle // inferred from sequence or structural similarity /// 0045931 // positive regulation of mitotic cell cycle // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048669 // collateral sprouting in absence of injury // not recorded /// 0048669 // collateral sprouting in absence of injury // inferred from sequence or structural similarity /// 0048669 // collateral sprouting in absence of injury // inferred from electronic annotation /// 0050803 // regulation of synapse structure and activity // not recorded /// 0050803 // regulation of synapse structure and activity // inferred from sequence or structural similarity /// 0050803 // regulation of synapse structure and activity // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0051124 // synaptic growth at neuromuscular junction // inferred from electronic annotation /// 0051124 // synaptic growth at neuromuscular junction // not recorded /// 0051402 // neuron apoptosis // inferred from electronic annotation /// 0051402 // neuron apoptosis // not recorded /// 0051563 // smooth endoplasmic reticulum calcium ion homeostasis // inferred from electronic annotation /// 0051563 // smooth endoplasmic reticulum calcium ion homeostasis // not recorded 0005576 // extracellular region // not recorded /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from sequence or structural similarity /// 0030424 // axon // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0031594 // neuromuscular junction // not recorded /// 0035253 // ciliary rootlet // inferred from electronic annotation /// 0035253 // ciliary rootlet // not recorded /// 0043005 // neuron projection // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043197 // dendritic spine // not recorded /// 0043198 // dendritic shaft // inferred from electronic annotation /// 0043198 // dendritic shaft // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded /// 0045202 // synapse // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0051233 // spindle midzone // inferred from electronic annotation /// 0051233 // spindle midzone // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // not recorded /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0016504 // peptidase activator activity // inferred from direct assay /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0033130 // acetylcholine receptor binding // inferred from electronic annotation /// 0033130 // acetylcholine receptor binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1380534_at BF546444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546444 /DB_XREF=gi:11637551 /DB_XREF=UI-R-C1-kd-e-01-0-UI.r1 /CLONE=UI-R-C1-kd-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.43575.1 /TIER=ConsEnd /STK=2 /UG=Rn.43575 /UG_TITLE=ESTs BF546444 1380535_at BE097394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097394 /DB_XREF=gi:8488325 /DB_XREF=UI-R-BO1-apx-a-01-0-UI.s1 /CLONE=UI-R-BO1-apx-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.49052.1 /TIER=ConsEnd /STK=2 /UG=Rn.49052 /UG_TITLE=ESTs BE097394 1380536_at BE096750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096750 /DB_XREF=gi:8487681 /DB_XREF=UI-R-BU0-apm-d-02-0-UI.s1 /CLONE=UI-R-BU0-apm-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.48052.1 /TIER=ConsEnd /STK=2 /UG=Rn.48052 /UG_TITLE=ESTs BE096750 hypothetical LOC300207 RGD1305928 300207 NM_001134528 1380537_at BI293796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293796 /DB_XREF=gi:14955632 /DB_XREF=UI-R-DK0-cdz-h-05-0-UI.s1 /CLONE=UI-R-DK0-cdz-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.19580.1 /TIER=ConsEnd /STK=2 /UG=Rn.19580 /UG_TITLE=ESTs, Weakly similar to MEM2 RAT MEMBRANE-ASSOCIATED PROTEIN HEM-2 (R.norvegicus) BI293796 NCK associated protein 1 like Nckap1l 315348 NM_001108119 0001782 // B cell homeostasis // inferred from sequence or structural similarity /// 0002262 // myeloid cell homeostasis // inferred from sequence or structural similarity /// 0006461 // protein complex assembly // inferred from sequence or structural similarity /// 0030011 // maintenance of cell polarity // inferred from sequence or structural similarity /// 0030593 // neutrophil chemotaxis // inferred from sequence or structural similarity /// 0030838 // positive regulation of actin filament polymerization // inferred from sequence or structural similarity /// 0030866 // cortical actin cytoskeleton organization // inferred from sequence or structural similarity /// 0030890 // positive regulation of B cell proliferation // inferred from sequence or structural similarity /// 0032700 // negative regulation of interleukin-17 production // inferred from sequence or structural similarity /// 0032715 // negative regulation of interleukin-6 production // inferred from sequence or structural similarity /// 0033630 // positive regulation of cell adhesion mediated by integrin // inferred from sequence or structural similarity /// 0035509 // negative regulation of myosin-light-chain-phosphatase activity // inferred from sequence or structural similarity /// 0042102 // positive regulation of T cell proliferation // inferred from sequence or structural similarity /// 0042221 // response to chemical stimulus // inferred from sequence or structural similarity /// 0042327 // positive regulation of phosphorylation // inferred from sequence or structural similarity /// 0042493 // response to drug // inferred from sequence or structural similarity /// 0043029 // T cell homeostasis // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0043372 // positive regulation of CD4-positive, alpha beta T cell differentiation // inferred from sequence or structural similarity /// 0043378 // positive regulation of CD8-positive, alpha-beta T cell differentiation // inferred from sequence or structural similarity /// 0045579 // positive regulation of B cell differentiation // inferred from sequence or structural similarity /// 0045588 // positive regulation of gamma-delta T cell differentiation // inferred from sequence or structural similarity /// 0045621 // positive regulation of lymphocyte differentiation // inferred from sequence or structural similarity /// 0045648 // positive regulation of erythrocyte differentiation // inferred from sequence or structural similarity /// 0050853 // B cell receptor signaling pathway // inferred from sequence or structural similarity /// 0060100 // positive regulation of phagocytosis, engulfment // inferred from sequence or structural similarity /// 0070358 // actin polymerization-dependent cell motility // inferred from sequence or structural similarity /// 0090023 // positive regulation of neutrophil chemotaxis // inferred from sequence or structural similarity 0005829 // cytosol // inferred from sequence or structural similarity /// 0031209 // SCAR complex // inferred from sequence or structural similarity 0030295 // protein kinase activator activity // inferred from sequence or structural similarity /// 0030675 // Rac GTPase activator activity // inferred from sequence or structural similarity /// 0032403 // protein complex binding // inferred from sequence or structural similarity 1380538_at BG379218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379218 /DB_XREF=gi:13303690 /DB_XREF=UI-R-BT1-bnl-f-02-0-UI.s1 /CLONE=UI-R-BT1-bnl-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.15912.1 /TIER=ConsEnd /STK=2 /UG=Rn.15912 /UG_TITLE=ESTs BG379218 1380539_at AA956424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956424 /DB_XREF=gi:4238898 /DB_XREF=UI-R-E1-fj-g-01-0-UI.s1 /CLONE=UI-R-E1-fj-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.40467.1 /TIER=ConsEnd /STK=2 /UG=Rn.40467 /UG_TITLE=ESTs AA956424 1380540_at AI547392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547392 /DB_XREF=gi:4464880 /DB_XREF=UI-R-C3-tf-b-03-0-UI.s1 /CLONE=UI-R-C3-tf-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.48277.1 /TIER=ConsEnd /STK=2 /UG=Rn.48277 /UG_TITLE=ESTs AI547392 1380541_at AA957801 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957801 /DB_XREF=gi:4277691 /DB_XREF=UI-R-E1-fv-h-11-0-UI.s1 /CLONE=UI-R-E1-fv-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.4272.3 /TIER=ConsEnd /STK=2 /UG=Rn.4272 /UG_TITLE=ESTs, Highly similar to 14P_HUMAN PROTEIN 1-4 (H.sapiens) AA957801 Musashi homolog 2 (Drosophila) Msi2 360596 XM_001081205 /// XM_340876 0048864 // stem cell development // not recorded 0005737 // cytoplasm // not recorded /// 0005844 // polysome // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003727 // single-stranded RNA binding // not recorded /// 0008266 // poly(U) RNA binding // not recorded 1380542_at AI013758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013758 /DB_XREF=gi:3227814 /DB_XREF=EST208433 /CLONE=RSPBS48 /FEA=EST /CNT=3 /TID=Rn.24999.1 /TIER=ConsEnd /STK=2 /UG=Rn.24999 /UG_TITLE=ESTs AI013758 1380543_at BF564294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564294 /DB_XREF=gi:11674024 /DB_XREF=UI-R-C4-alm-f-02-0-UI.r1 /CLONE=UI-R-C4-alm-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.24760.1 /TIER=ConsEnd /STK=2 /UG=Rn.24760 /UG_TITLE=ESTs BF564294 1380544_at BF396688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396688 /DB_XREF=gi:11381668 /DB_XREF=UI-R-BS2-beu-a-02-0-UI.s1 /CLONE=UI-R-BS2-beu-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.48549.1 /TIER=ConsEnd /STK=2 /UG=Rn.48549 /UG_TITLE=ESTs BF396688 1380545_at BF419027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419027 /DB_XREF=gi:11407016 /DB_XREF=UI-R-BJ2-bqm-g-02-0-UI.s1 /CLONE=UI-R-BJ2-bqm-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.63466.1 /TIER=ConsEnd /STK=2 /UG=Rn.63466 /UG_TITLE=ESTs, Highly similar to T42627 ADP-ribosylation factor-directed GTPase activating protein, isoform a - mouse (M.musculus) BF419027 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 Asap1 314961 NM_001044245 0007165 // signal transduction // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation /// 0046847 // filopodium assembly // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008093 // cytoskeletal adaptor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380546_at AA926048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926048 /DB_XREF=gi:4237239 /DB_XREF=UI-R-A1-el-c-03-0-UI.s1 /CLONE=UI-R-A1-el-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.8436.1 /TIER=ConsEnd /STK=2 /UG=Rn.8436 /UG_TITLE=ESTs, Weakly similar to S52675 probable membrane protein YDR109c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AA926048 FGGY carbohydrate kinase domain containing Fggy 298250 NM_001013932 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0070050 // neuron homeostasis // not recorded 0016301 // kinase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1380547_at BI288519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288519 /DB_XREF=gi:14945185 /DB_XREF=UI-R-DK0-cdb-h-01-0-UI.s1 /CLONE=UI-R-DK0-cdb-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.36168.1 /TIER=ConsEnd /STK=2 /UG=Rn.36168 /UG_TITLE=ESTs, Highly similar to CLC3 RAT CHLORIDE CHANNEL PROTEIN 3 (R.norvegicus) BI288519 chloride channel 3 Clcn3 84360 NM_053363 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from direct assay /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from direct assay /// 0006821 // chloride transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005622 // intracellular // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from sequence or structural similarity /// 0005770 // late endosome // not recorded /// 0005770 // late endosome // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from direct assay /// 0012506 // vesicle membrane // not recorded /// 0012506 // vesicle membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030658 // transport vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from direct assay /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from direct assay /// 0005247 // voltage-gated chloride channel activity // inferred from direct assay /// 0005247 // voltage-gated chloride channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation /// 0030165 // PDZ domain binding // not recorded /// 0030165 // PDZ domain binding // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // not recorded 1380548_at BF420494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420494 /DB_XREF=gi:11408483 /DB_XREF=UI-R-BJ2-bpw-f-07-0-UI.s1 /CLONE=UI-R-BJ2-bpw-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.63846.1 /TIER=ConsEnd /STK=2 /UG=Rn.63846 /UG_TITLE=ESTs, Weakly similar to T22994 hypothetical protein F59C6.9 - Caenorhabditis elegans (C.elegans) BF420494 intraflagellar transport 57 homolog (Chlamydomonas) Ift57 303968 NM_001107093 0006915 // apoptosis // not recorded /// 0006919 // activation of caspase activity // not recorded /// 0042981 // regulation of apoptosis // not recorded 0005794 // Golgi apparatus // not recorded /// 0005932 // microtubule basal body // not recorded /// 0019861 // flagellum // inferred from electronic annotation 0005515 // protein binding // not recorded 1380549_at AI555625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555625 /DB_XREF=gi:4487988 /DB_XREF=UI-R-C2p-qy-d-02-0-UI.s1 /CLONE=UI-R-C2p-qy-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.76779.1 /TIER=ConsEnd /STK=2 /UG=Rn.76779 /UG_TITLE=ESTs AI555625 cell division cycle and apoptosis regulator 1 Ccar1 361849 NM_001108535 0008380 // RNA splicing // not recorded /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005794 // Golgi apparatus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1380550_at AW251646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251646 /DB_XREF=gi:6595237 /DB_XREF=UI-R-BJ0-adp-b-12-0-UI.s1 /CLONE=UI-R-BJ0-adp-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.41572.1 /TIER=ConsEnd /STK=2 /UG=Rn.41572 /UG_TITLE=ESTs, Weakly similar to B39066 proline-rich protein 15 - rat (R.norvegicus) AW251646 AT rich interactive domain 1A (SWI-like) Arid1a 297867 NM_001106635 0006325 // chromatin organization // not recorded /// 0030520 // estrogen receptor signaling pathway // not recorded /// 0030521 // androgen receptor signaling pathway // not recorded /// 0042921 // glucocorticoid receptor signaling pathway // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0016514 // SWI/SNF complex // not recorded /// 0071564 // npBAF complex // not recorded /// 0071565 // nBAF complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded 1380551_at AW254395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254395 /DB_XREF=gi:6597986 /DB_XREF=UI-R-BJ0-aei-d-10-0-UI.s1 /CLONE=UI-R-BJ0-aei-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.41429.1 /TIER=ConsEnd /STK=2 /UG=Rn.41429 /UG_TITLE=ESTs AW254395 1380552_at AI555855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555855 /DB_XREF=gi:4488218 /DB_XREF=UI-R-C2p-re-g-06-0-UI.s1 /CLONE=UI-R-C2p-re-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.48273.1 /TIER=ConsEnd /STK=2 /UG=Rn.48273 /UG_TITLE=ESTs AI555855 1380553_at BM390497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390497 /DB_XREF=gi:18190550 /DB_XREF=UI-R-CN1-cjq-n-08-0-UI.s1 /CLONE=UI-R-CN1-cjq-n-08-0-UI /FEA=EST /CNT=4 /TID=Rn.77480.1 /TIER=ConsEnd /STK=2 /UG=Rn.77480 /UG_TITLE=ESTs, Moderately similar to C8O1_HUMAN PROTEIN C8ORF1 (H.sapiens) BM390497 oxidative stress induced growth inhibitor family member 2 Osgin2 313085 XM_001056612 /// XM_232798 1380554_at AI101463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101463 /DB_XREF=gi:3706355 /DB_XREF=EST210752 /CLONE=RBRBP35 /FEA=EST /CNT=4 /TID=Rn.23888.1 /TIER=ConsEnd /STK=2 /UG=Rn.23888 /UG_TITLE=ESTs AI101463 1380555_at BI293042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293042 /DB_XREF=gi:14954157 /DB_XREF=UI-R-DK0-cdj-f-05-0-UI.s1 /CLONE=UI-R-DK0-cdj-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.78299.1 /TIER=ConsEnd /STK=2 /UG=Rn.78299 /UG_TITLE=ESTs, Weakly similar to FAF1 MOUSE FAF1 PROTEIN (M.musculus) BI293042 Fas associated factor family member 2 Faf2 291000 NM_001017445 0006986 // response to unfolded protein // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005811 // lipid particle // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1380556_at AW535276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535276 /DB_XREF=gi:7177690 /DB_XREF=UI-R-C4-alv-c-06-0-UI.s1 /CLONE=UI-R-C4-alv-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.48462.1 /TIER=ConsEnd /STK=2 /UG=Rn.48462 /UG_TITLE=ESTs AW535276 F-box protein 10 Fbxo10 362511 XM_001071167 /// XM_342829 1380557_at BE119497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119497 /DB_XREF=gi:8511566 /DB_XREF=UI-R-CA0-bae-a-06-0-UI.s1 /CLONE=UI-R-CA0-bae-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.49145.1 /TIER=ConsEnd /STK=2 /UG=Rn.49145 /UG_TITLE=ESTs, Highly similar to ODBA RAT 2-OXOISOVALERATE DEHYDROGENASE ALPHA SUBUNIT, MITOCHONDRIAL PRECURSOR (R.norvegicus) BE119497 branched chain ketoacid dehydrogenase E1, alpha polypeptide Bckdha 25244 NM_012782 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0009083 // branched chain family amino acid catabolic process // not recorded /// 0009083 // branched chain family amino acid catabolic process // traceable author statement /// 0009083 // branched chain family amino acid catabolic process // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005947 // mitochondrial alpha-ketoglutarate dehydrogenase complex // not recorded /// 0005947 // mitochondrial alpha-ketoglutarate dehydrogenase complex // inferred from sequence or structural similarity 0003826 // alpha-ketoacid dehydrogenase activity // not recorded /// 0003826 // alpha-ketoacid dehydrogenase activity // traceable author statement /// 0003826 // alpha-ketoacid dehydrogenase activity // inferred from sequence or structural similarity /// 0003863 // 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016536 // cyclin-dependent protein kinase 5 activator regulator activity // inferred from electronic annotation /// 0016624 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047101 // 2-oxoisovalerate dehydrogenase (acylating) activity // traceable author statement 1380558_at BM391243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391243 /DB_XREF=gi:18191296 /DB_XREF=UI-R-DY0-ckq-i-16-0-UI.s1 /CLONE=UI-R-DY0-ckq-i-16-0-UI /FEA=EST /CNT=3 /TID=Rn.78430.1 /TIER=ConsEnd /STK=2 /UG=Rn.78430 /UG_TITLE=ESTs BM391243 distal-less homeobox 3 Dlx3 287638 NM_001105832 0001568 // blood vessel development // not recorded /// 0001890 // placenta development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1380559_at AI030465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030465 /DB_XREF=gi:3248291 /DB_XREF=UI-R-C0-ji-g-11-0-UI.s1 /CLONE=UI-R-C0-ji-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.18506.1 /TIER=ConsEnd /STK=2 /UG=Rn.18506 /UG_TITLE=ESTs AI030465 1380560_at BI289499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289499 /DB_XREF=gi:14947134 /DB_XREF=UI-R-DK0-cfh-g-08-0-UI.s1 /CLONE=UI-R-DK0-cfh-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.20705.1 /TIER=ConsEnd /STK=2 /UG=Rn.20705 /UG_TITLE=ESTs BI289499 1380561_at BI287928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287928 /DB_XREF=gi:14944011 /DB_XREF=UI-R-CW0s-ccm-h-11-0-UI.s1 /CLONE=UI-R-CW0s-ccm-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.25275.1 /TIER=ConsEnd /STK=2 /UG=Rn.25275 /UG_TITLE=ESTs, Weakly similar to T19442 hypothetical protein C25A1.7a - Caenorhabditis elegans (C.elegans) BI287928 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006428 // isoleucyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004822 // isoleucine-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1380562_at AW523351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523351 /DB_XREF=gi:7165736 /DB_XREF=UI-R-BO0-aif-c-06-0-UI.s1 /CLONE=UI-R-BO0-aif-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.45622.1 /TIER=ConsEnd /STK=2 /UG=Rn.45622 /UG_TITLE=ESTs AW523351 RNA pseudouridylate synthase domain containing 3 Rpusd3 362416 NM_001108641 0001522 // pseudouridine synthesis // inferred from electronic annotation /// 0009451 // RNA modification // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0009982 // pseudouridine synthase activity // inferred from electronic annotation 1380563_at BM387062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387062 /DB_XREF=gi:18187115 /DB_XREF=UI-R-CN1-cji-e-22-0-UI.s1 /CLONE=UI-R-CN1-cji-e-22-0-UI /FEA=EST /CNT=3 /TID=Rn.81919.1 /TIER=ConsEnd /STK=2 /UG=Rn.81919 /UG_TITLE=ESTs BM387062 sarcospan Sspn 500364 NM_001109255 0016021 // integral to membrane // inferred from electronic annotation /// 0030133 // transport vesicle // not recorded /// 0042383 // sarcolemma // not recorded 1380564_at AW522823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522823 /DB_XREF=gi:7165208 /DB_XREF=UI-R-BO0-ahn-b-10-0-UI.s1 /CLONE=UI-R-BO0-ahn-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.32510.1 /TIER=ConsEnd /STK=2 /UG=Rn.32510 /UG_TITLE=ESTs AW522823 1380565_at AW532670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532670 /DB_XREF=gi:7175084 /DB_XREF=UI-R-BS0-amk-g-02-0-UI.s1 /CLONE=UI-R-BS0-amk-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.44688.1 /TIER=ConsEnd /STK=2 /UG=Rn.44688 /UG_TITLE=ESTs, Weakly similar to T23154 hypothetical protein K01A11.2 - Caenorhabditis elegans (C.elegans) AW532670 similar to 2810422O20Rik protein RGD1306783 304928 NM_001025668 1380566_at BI279622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279622 /DB_XREF=gi:14927614 /DB_XREF=UI-R-DE0-cae-g-03-0-UI.s1 /CLONE=UI-R-DE0-cae-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.67750.1 /TIER=ConsEnd /STK=2 /UG=Rn.67750 /UG_TITLE=ESTs, Moderately similar to Y285_HUMAN HYPOTHETICAL PROTEIN KIAA0285 (H.sapiens) BI279622 C2 calcium-dependent domain containing 2-like C2cd2l 300666 NM_001011996 0016021 // integral to membrane // inferred from electronic annotation 1380567_at AI410020 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410020 /DB_XREF=gi:4253524 /DB_XREF=EST238313 /CLONE=RPLDH81 /FEA=EST /CNT=3 /TID=Rn.43624.1 /TIER=ConsEnd /STK=2 /UG=Rn.43624 /UG_TITLE=ESTs AI410020 1380568_a_at AI575274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575274 /DB_XREF=gi:4559650 /DB_XREF=UI-R-Y0-vc-f-06-0-UI.s1 /CLONE=UI-R-Y0-vc-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.6177.1 /TIER=ConsEnd /STK=2 /UG=Rn.6177 /UG_TITLE=ESTs, Moderately similar to DDB2_HUMAN DNA DAMAGE BINDING PROTEIN 2 (DAMAGE-SPECIFIC DNA BINDING PROTEIN 2) (DDB P48 SUBUNIT) (DDBB) (UV-DAMAGED DNA-BINDING PROTEIN 2) (UV-DDB 2) (H.sapiens) AI575274 damage specific DNA binding protein 2 LOC100362121 100362121 XM_002726233 /// XM_002729197 1380569_at BI281591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281591 /DB_XREF=gi:14931478 /DB_XREF=UI-R-CT0s-cau-b-08-0-UI.s1 /CLONE=UI-R-CT0s-cau-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.74031.1 /TIER=ConsEnd /STK=2 /UG=Rn.74031 /UG_TITLE=ESTs BI281591 ring finger protein 41 Rnf41 362814 NM_001012195 0000209 // protein polyubiquitination // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0080010 // regulation of oxygen and reactive oxygen species metabolic process // not recorded 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0031386 // protein tag // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380570_at AI145593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145593 /DB_XREF=gi:3667392 /DB_XREF=UI-R-BT0-ps-a-11-0-UI.s1 /CLONE=UI-R-BT0-ps-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.28546.1 /TIER=ConsEnd /STK=2 /UG=Rn.28546 /UG_TITLE=ESTs, Highly similar to T00634 hypothetical protein H_DJ0897G10.1 (H.sapiens) AI145593 1380571_at AW521312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521312 /DB_XREF=gi:7163690 /DB_XREF=UI-R-BO0-agl-a-12-0-UI.s1 /CLONE=UI-R-BO0-agl-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.45150.1 /TIER=ConsEnd /STK=2 /UG=Rn.45150 /UG_TITLE=ESTs AW521312 1380572_at BI294911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294911 /DB_XREF=gi:14957828 /DB_XREF=UI-R-DK0-ced-e-11-0-UI.s1 /CLONE=UI-R-DK0-ced-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.79376.1 /TIER=ConsEnd /STK=2 /UG=Rn.79376 /UG_TITLE=ESTs BI294911 1380573_a_at AA964213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964213 /DB_XREF=gi:4279089 /DB_XREF=UI-R-E1-gl-a-01-0-UI.s1 /CLONE=UI-R-E1-gl-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.11739.1 /TIER=ConsEnd /STK=2 /UG=Rn.11739 /UG_TITLE=ESTs AA964213 similar to C19orf36 protein RGD1564722 362832 XM_001071667 /// XM_002726872 /// XM_002729764 /// XM_343160 1380574_at AI548007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548007 /DB_XREF=gi:4465495 /DB_XREF=UI-R-C3-tc-b-02-0-UI.s1 /CLONE=UI-R-C3-tc-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.26954.1 /TIER=ConsEnd /STK=2 /UG=Rn.26954 /UG_TITLE=ESTs AI548007 1380575_at AI407274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407274 /DB_XREF=gi:4250778 /DB_XREF=EST235562 /CLONE=ROVDQ81 /FEA=EST /CNT=3 /TID=Rn.41609.1 /TIER=ConsEnd /STK=2 /UG=Rn.41609 /UG_TITLE=ESTs AI407274 1380576_at AI556890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556890 /DB_XREF=gi:4489253 /DB_XREF=UI-R-C2p-rp-b-09-0-UI.s1 /CLONE=UI-R-C2p-rp-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.38867.1 /TIER=ConsEnd /STK=2 /UG=Rn.38867 /UG_TITLE=ESTs AI556890 1380577_at AI175616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175616 /DB_XREF=gi:3726254 /DB_XREF=EST219173 /CLONE=ROVBC67 /FEA=EST /CNT=3 /TID=Rn.13131.1 /TIER=ConsEnd /STK=2 /UG=Rn.13131 /UG_TITLE=ESTs, Moderately similar to ABG2_HUMAN ATP-BINDING CASSETTE, SUB-FAMILY G, MEMBER 2 (PLACENTA-SPECIFIC ATP-BINDING CASSETTE TRANSPORTER) (BREAST CANCER RESISTANCE PROTEIN) (H.sapiens) AI175616 ATP-binding cassette, sub-family G (WHITE), member 2 Abcg2 312382 NM_181381 0006810 // transport // inferred from electronic annotation /// 0010039 // response to iron ion // inferred from expression pattern /// 0015893 // drug transport // inferred from direct assay /// 0046618 // drug export // inferred from mutant phenotype /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051593 // response to folic acid // inferred from expression pattern /// 0060136 // embryonic process involved in female pregnancy // inferred from direct assay 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0015238 // drug transmembrane transporter activity // inferred from direct assay /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // traceable author statement /// 0042803 // protein homodimerization activity // not recorded /// 0046983 // protein dimerization activity // inferred from direct assay 1380578_at AA859349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859349 /DB_XREF=gi:4229697 /DB_XREF=UI-R-E0-cl-b-12-0-UI.s1 /CLONE=UI-R-E0-cl-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.2693.1 /TIER=ConsEnd /STK=2 /UG=Rn.2693 /UG_TITLE=ESTs AA859349 1380579_at BM384214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384214 /DB_XREF=gi:18184267 /DB_XREF=UI-R-DZ0-cks-p-12-0-UI.s1 /CLONE=UI-R-DZ0-cks-p-12-0-UI /FEA=EST /CNT=3 /TID=Rn.15159.1 /TIER=ConsEnd /STK=2 /UG=Rn.15159 /UG_TITLE=ESTs, Highly similar to CARTILAGE MATRIX PROTEIN PRECURSOR (M.musculus) BM384214 matrilin 1, cartilage matrix protein Matn1 297894 NM_001006979 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1380580_at AI137791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137791 /DB_XREF=gi:3638568 /DB_XREF=UI-R-E1-gc-b-05-0-UI.s1 /CLONE=UI-R-E1-gc-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.21652.1 /TIER=ConsEnd /STK=2 /UG=Rn.21652 /UG_TITLE=ESTs AI137791 1380581_at AW527205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527205 /DB_XREF=gi:7169619 /DB_XREF=UI-R-BO1-ajm-f-11-0-UI.s1 /CLONE=UI-R-BO1-ajm-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.46452.1 /TIER=ConsEnd /STK=2 /UG=Rn.46452 /UG_TITLE=ESTs AW527205 zinc finger protein LOC100125361 LOC100125361 100125361 NM_001109677 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380582_at AW535553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535553 /DB_XREF=gi:7177967 /DB_XREF=UI-R-C4-alx-h-06-0-UI.s1 /CLONE=UI-R-C4-alx-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.42075.1 /TIER=ConsEnd /STK=2 /UG=Rn.42075 /UG_TITLE=ESTs AW535553 colony stimulating factor 1 (macrophage) Csf1 78965 NM_023981 0001503 // ossification // inferred from mutant phenotype /// 0001954 // positive regulation of cell-matrix adhesion // inferred from electronic annotation /// 0001954 // positive regulation of cell-matrix adhesion // not recorded /// 0003006 // developmental process involved in reproduction // inferred from electronic annotation /// 0003006 // developmental process involved in reproduction // not recorded /// 0007275 // multicellular organismal development // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0010744 // positive regulation of macrophage derived foam cell differentiation // inferred from electronic annotation /// 0010744 // positive regulation of macrophage derived foam cell differentiation // not recorded /// 0030225 // macrophage differentiation // inferred from expression pattern /// 0030278 // regulation of ossification // inferred from electronic annotation /// 0030278 // regulation of ossification // not recorded /// 0030316 // osteoclast differentiation // inferred from mutant phenotype /// 0030316 // osteoclast differentiation // not recorded /// 0030316 // osteoclast differentiation // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0032270 // positive regulation of cellular protein metabolic process // inferred from electronic annotation /// 0032270 // positive regulation of cellular protein metabolic process // not recorded /// 0032946 // positive regulation of mononuclear cell proliferation // inferred from electronic annotation /// 0032946 // positive regulation of mononuclear cell proliferation // not recorded /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0042476 // odontogenesis // inferred from mutant phenotype /// 0042488 // positive regulation of odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042488 // positive regulation of odontogenesis of dentine-containing tooth // not recorded /// 0045651 // positive regulation of macrophage differentiation // inferred from electronic annotation /// 0045651 // positive regulation of macrophage differentiation // not recorded /// 0045657 // positive regulation of monocyte differentiation // inferred from electronic annotation /// 0045657 // positive regulation of monocyte differentiation // not recorded /// 0045672 // positive regulation of osteoclast differentiation // inferred from electronic annotation /// 0045672 // positive regulation of osteoclast differentiation // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // not recorded /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060444 // branching involved in mammary gland duct morphogenesis // not recorded /// 0060611 // mammary gland fat development // inferred from electronic annotation /// 0060611 // mammary gland fat development // not recorded /// 0060763 // mammary duct terminal end bud growth // inferred from electronic annotation /// 0060763 // mammary duct terminal end bud growth // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043235 // receptor complex // inferred from electronic annotation /// 0043235 // receptor complex // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005157 // macrophage colony-stimulating factor receptor binding // inferred from electronic annotation /// 0005157 // macrophage colony-stimulating factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation 1380583_s_at AW535553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535553 /DB_XREF=gi:7177967 /DB_XREF=UI-R-C4-alx-h-06-0-UI.s1 /CLONE=UI-R-C4-alx-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.42075.1 /TIER=ConsEnd /STK=2 /UG=Rn.42075 /UG_TITLE=ESTs AW535553 colony stimulating factor 1 (macrophage) Csf1 78965 NM_023981 0001503 // ossification // inferred from mutant phenotype /// 0001503 // ossification // inferred from electronic annotation /// 0001954 // positive regulation of cell-matrix adhesion // inferred from electronic annotation /// 0001954 // positive regulation of cell-matrix adhesion // not recorded /// 0001954 // positive regulation of cell-matrix adhesion // inferred from genetic interaction /// 0003006 // developmental process involved in reproduction // inferred from electronic annotation /// 0003006 // developmental process involved in reproduction // not recorded /// 0003006 // developmental process involved in reproduction // inferred from mutant phenotype /// 0007275 // multicellular organismal development // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0010744 // positive regulation of macrophage derived foam cell differentiation // inferred from electronic annotation /// 0010744 // positive regulation of macrophage derived foam cell differentiation // not recorded /// 0030225 // macrophage differentiation // inferred from expression pattern /// 0030225 // macrophage differentiation // inferred from electronic annotation /// 0030278 // regulation of ossification // inferred from electronic annotation /// 0030278 // regulation of ossification // not recorded /// 0030278 // regulation of ossification // inferred from mutant phenotype /// 0030316 // osteoclast differentiation // inferred from mutant phenotype /// 0030316 // osteoclast differentiation // not recorded /// 0030316 // osteoclast differentiation // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0030335 // positive regulation of cell migration // inferred from genetic interaction /// 0032270 // positive regulation of cellular protein metabolic process // inferred from electronic annotation /// 0032270 // positive regulation of cellular protein metabolic process // not recorded /// 0032946 // positive regulation of mononuclear cell proliferation // inferred from electronic annotation /// 0032946 // positive regulation of mononuclear cell proliferation // not recorded /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0040018 // positive regulation of multicellular organism growth // inferred from mutant phenotype /// 0042476 // odontogenesis // inferred from mutant phenotype /// 0042476 // odontogenesis // inferred from electronic annotation /// 0042488 // positive regulation of odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042488 // positive regulation of odontogenesis of dentine-containing tooth // not recorded /// 0042488 // positive regulation of odontogenesis of dentine-containing tooth // inferred from mutant phenotype /// 0045651 // positive regulation of macrophage differentiation // inferred from electronic annotation /// 0045651 // positive regulation of macrophage differentiation // not recorded /// 0045651 // positive regulation of macrophage differentiation // inferred from mutant phenotype /// 0045657 // positive regulation of monocyte differentiation // inferred from electronic annotation /// 0045657 // positive regulation of monocyte differentiation // not recorded /// 0045657 // positive regulation of monocyte differentiation // inferred from mutant phenotype /// 0045672 // positive regulation of osteoclast differentiation // inferred from electronic annotation /// 0045672 // positive regulation of osteoclast differentiation // not recorded /// 0045672 // positive regulation of osteoclast differentiation // inferred from direct assay /// 0045672 // positive regulation of osteoclast differentiation // inferred from genetic interaction /// 0045672 // positive regulation of osteoclast differentiation // inferred from mutant phenotype /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from genetic interaction /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from direct assay /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // not recorded /// 0048873 // homeostasis of number of cells within a tissue // inferred from mutant phenotype /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060444 // branching involved in mammary gland duct morphogenesis // not recorded /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from mutant phenotype /// 0060611 // mammary gland fat development // inferred from electronic annotation /// 0060611 // mammary gland fat development // not recorded /// 0060611 // mammary gland fat development // inferred from mutant phenotype /// 0060763 // mammary duct terminal end bud growth // inferred from electronic annotation /// 0060763 // mammary duct terminal end bud growth // not recorded /// 0060763 // mammary duct terminal end bud growth // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043235 // receptor complex // inferred from electronic annotation /// 0043235 // receptor complex // not recorded /// 0043235 // receptor complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005157 // macrophage colony-stimulating factor receptor binding // inferred from electronic annotation /// 0005157 // macrophage colony-stimulating factor receptor binding // not recorded /// 0005157 // macrophage colony-stimulating factor receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction 1380584_at BE109190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109190 /DB_XREF=gi:8501295 /DB_XREF=UI-R-BS1-azb-h-11-0-UI.s1 /CLONE=UI-R-BS1-azb-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.50041.1 /TIER=ConsEnd /STK=2 /UG=Rn.50041 /UG_TITLE=ESTs BE109190 1380585_at BF396335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396335 /DB_XREF=gi:11381307 /DB_XREF=UI-R-BS2-bdx-a-01-0-UI.s1 /CLONE=UI-R-BS2-bdx-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.14563.1 /TIER=ConsEnd /STK=2 /UG=Rn.14563 /UG_TITLE=ESTs BF396335 1380586_at AI711267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711267 /DB_XREF=gi:5001043 /DB_XREF=UI-R-AA1-zv-b-06-0-UI.s1 /CLONE=UI-R-AA1-zv-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.44747.1 /TIER=ConsEnd /STK=2 /UG=Rn.44747 /UG_TITLE=ESTs AI711267 1380587_at BF404982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404982 /DB_XREF=gi:11392957 /DB_XREF=UI-R-CA1-bio-a-06-0-UI.s1 /CLONE=UI-R-CA1-bio-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.59480.1 /TIER=ConsEnd /STK=2 /UG=Rn.59480 /UG_TITLE=ESTs BF404982 1380588_at AI511180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511180 /DB_XREF=gi:4416879 /DB_XREF=UI-R-BT0-px-g-09-0-UI.s1 /CLONE=UI-R-BT0-px-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.34641.1 /TIER=ConsEnd /STK=2 /UG=Rn.34641 /UG_TITLE=ESTs AI511180 1380589_at AI045025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045025 /DB_XREF=gi:3291844 /DB_XREF=UI-R-C1-kf-b-05-0-UI.s1 /CLONE=UI-R-C1-kf-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.34672.1 /TIER=ConsEnd /STK=2 /UG=Rn.34672 /UG_TITLE=ESTs, Weakly similar to I38155 DNA-binding regulatory factor X5 (H.sapiens) AI045025 1380590_at BE115496 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115496 /DB_XREF=gi:8507601 /DB_XREF=UI-R-BS1-axw-e-07-0-UI.s1 /CLONE=UI-R-BS1-axw-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.21385.1 /TIER=ConsEnd /STK=2 /UG=Rn.21385 /UG_TITLE=ESTs BE115496 1380591_at AW528430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528430 /DB_XREF=gi:7170844 /DB_XREF=UI-R-BO1-ajl-c-11-0-UI.s1 /CLONE=UI-R-BO1-ajl-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.46879.1 /TIER=ConsEnd /STK=2 /UG=Rn.46879 /UG_TITLE=ESTs AW528430 1380592_at BI280752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280752 /DB_XREF=gi:14929818 /DB_XREF=UI-R-DC0-bzi-d-09-0-UI.s1 /CLONE=UI-R-DC0-bzi-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.39071.1 /TIER=ConsEnd /STK=2 /UG=Rn.39071 /UG_TITLE=ESTs BI280752 1380593_at AI008189 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008189 /DB_XREF=gi:3222021 /DB_XREF=EST202640 /CLONE=REMAU09 /FEA=EST /CNT=3 /TID=Rn.31850.1 /TIER=ConsEnd /STK=2 /UG=Rn.31850 /UG_TITLE=ESTs AI008189 1380594_at AA957500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957500 /DB_XREF=gi:4277390 /DB_XREF=UI-R-E1-gb-e-09-0-UI.s1 /CLONE=UI-R-E1-gb-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.9303.1 /TIER=ConsEnd /STK=2 /UG=Rn.9303 /UG_TITLE=ESTs AA957500 signal peptide, CUB domain, EGF-like 1 Scube1 315174 NM_001134884 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0019897 // extrinsic to plasma membrane // inferred from electronic annotation /// 0019897 // extrinsic to plasma membrane // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1380595_at AI071495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071495 /DB_XREF=gi:3397710 /DB_XREF=UI-R-C2-nc-d-04-0-UI.s1 /CLONE=UI-R-C2-nc-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.41362.1 /TIER=ConsEnd /STK=2 /UG=Rn.41362 /UG_TITLE=ESTs AI071495 1380596_at BE098869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098869 /DB_XREF=gi:8490740 /DB_XREF=UI-R-BJ1-ate-g-07-0-UI.s1 /CLONE=UI-R-BJ1-ate-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.39043.1 /TIER=ConsEnd /STK=2 /UG=Rn.39043 /UG_TITLE=ESTs BE098869 desmoglein 2 Dsg2 307562 XM_001054396 /// XM_226112 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0060135 // maternal process involved in female pregnancy // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016328 // lateral plasma membrane // inferred from direct assay /// 0030054 // cell junction // not recorded /// 0030057 // desmosome // not recorded 0005509 // calcium ion binding // inferred from electronic annotation 1380597_at BF403431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403431 /DB_XREF=gi:11391368 /DB_XREF=UI-R-CA1-biy-b-17-0-UI.s1 /CLONE=UI-R-CA1-biy-b-17-0-UI /FEA=EST /CNT=3 /TID=Rn.60269.1 /TIER=ConsEnd /STK=2 /UG=Rn.60269 /UG_TITLE=ESTs BF403431 1380598_at AI101569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101569 /DB_XREF=gi:3706452 /DB_XREF=EST210858 /CLONE=RBRBS38 /FEA=EST /CNT=3 /TID=Rn.28083.1 /TIER=ConsEnd /STK=2 /UG=Rn.28083 /UG_TITLE=ESTs AI101569 1380599_at AI639258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639258 /DB_XREF=gi:4700292 /DB_XREF=rx01619s /CLONE=rx01619 /FEA=EST /CNT=3 /TID=Rn.34807.1 /TIER=ConsEnd /STK=2 /UG=Rn.34807 /UG_TITLE=ESTs AI639258 1380600_at AA893733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893733 /DB_XREF=gi:4132326 /DB_XREF=EST197536 /CLONE=RPLAK02 /FEA=EST /CNT=3 /TID=Rn.14827.1 /TIER=ConsEnd /STK=2 /UG=Rn.14827 /UG_TITLE=ESTs, Weakly similar to S40148 integrin alpha-7A chain - rat (R.norvegicus) AA893733 integrin, alpha 2b Itga2b 685269 XM_001063315 /// XM_002727822 0002687 // positive regulation of leukocyte migration // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0070527 // platelet aggregation // inferred from mutant phenotype 0005886 // plasma membrane // not recorded /// 0005925 // focal adhesion // not recorded /// 0008305 // integrin complex // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031092 // platelet alpha granule membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0050840 // extracellular matrix binding // not recorded /// 0070051 // fibrinogen binding // inferred from direct assay 1380601_at AI136567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136567 /DB_XREF=gi:3637344 /DB_XREF=UI-R-C2p-nw-f-01-0-UI.s1 /CLONE=UI-R-C2p-nw-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.27174.1 /TIER=ConsEnd /STK=2 /UG=Rn.27174 /UG_TITLE=ESTs AI136567 1380602_at AI764190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764190 /DB_XREF=gi:5210125 /DB_XREF=UI-R-Y0-acr-h-10-0-UI.s1 /CLONE=UI-R-Y0-acr-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.42051.1 /TIER=ConsEnd /STK=2 /UG=Rn.42051 /UG_TITLE=ESTs AI764190 1380603_at AI044853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044853 /DB_XREF=gi:3291672 /DB_XREF=UI-R-C1-kd-b-09-0-UI.s1 /CLONE=UI-R-C1-kd-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.16037.1 /TIER=ConsEnd /STK=2 /UG=Rn.16037 /UG_TITLE=ESTs AI044853 1380604_at AI072151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072151 /DB_XREF=gi:3398345 /DB_XREF=UI-R-C2-mz-e-07-0-UI.s1 /CLONE=UI-R-C2-mz-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.20153.1 /TIER=ConsEnd /STK=2 /UG=Rn.20153 /UG_TITLE=ESTs, Weakly similar to MATERNAL PUMILIO PROTEIN (D.melanogaster) AI072151 Pumilio homolog 2 (Drosophila) Pum2 298874 NM_001106715 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1380605_at BM387149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387149 /DB_XREF=gi:18187202 /DB_XREF=UI-R-CN1-cji-h-03-0-UI.s1 /CLONE=UI-R-CN1-cji-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.76495.1 /TIER=ConsEnd /STK=2 /UG=Rn.76495 /UG_TITLE=ESTs BM387149 1380606_at BF404346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404346 /DB_XREF=gi:11392321 /DB_XREF=UI-R-CA1-bie-a-06-0-UI.s1 /CLONE=UI-R-CA1-bie-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.58880.1 /TIER=ConsEnd /STK=2 /UG=Rn.58880 /UG_TITLE=ESTs BF404346 1380607_at BI295044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295044 /DB_XREF=gi:14958094 /DB_XREF=UI-R-DK0-cef-b-06-0-UI.s1 /CLONE=UI-R-DK0-cef-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.53088.1 /TIER=ConsEnd /STK=2 /UG=Rn.53088 /UG_TITLE=ESTs BI295044 1380608_at BM386241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386241 /DB_XREF=gi:18186289 /DB_XREF=UI-R-CN1-cjf-g-20-0-UI.s1 /CLONE=UI-R-CN1-cjf-g-20-0-UI /FEA=EST /CNT=2 /TID=Rn.65969.1 /TIER=ConsEnd /STK=2 /UG=Rn.65969 /UG_TITLE=ESTs BM386241 histone deacetylase 10 Hdac10 362981 NM_001035000 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006476 // protein deacetylation // not recorded /// 0014003 // oligodendrocyte development // inferred from expression pattern /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016575 // histone deacetylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004407 // histone deacetylase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0033558 // protein deacetylase activity // not recorded /// 0042826 // histone deacetylase binding // not recorded 1380609_at BF405083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405083 /DB_XREF=gi:11393058 /DB_XREF=UI-R-CA1-bip-d-07-0-UI.s1 /CLONE=UI-R-CA1-bip-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.62292.1 /TIER=ConsEnd /STK=2 /UG=Rn.62292 /UG_TITLE=ESTs, Weakly similar to LEGU_HUMAN LEGUMAIN PRECURSOR (H.sapiens) BF405083 legumain Lgmn 63865 NM_022226 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0008152 // metabolic process // not recorded /// 0040015 // negative regulation of multicellular organism growth // inferred from electronic annotation /// 0040015 // negative regulation of multicellular organism growth // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1380610_at AI406521 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406521 /DB_XREF=gi:4250025 /DB_XREF=EST234807 /CLONE=RBRDL27 /FEA=EST /CNT=2 /TID=Rn.43778.1 /TIER=ConsEnd /STK=2 /UG=Rn.43778 /UG_TITLE=ESTs AI406521 1380611_at BI284255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284255 /DB_XREF=gi:14936770 /DB_XREF=UI-R-CX0s-ccq-a-03-0-UI.s1 /CLONE=UI-R-CX0s-ccq-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.66286.1 /TIER=ConsEnd /STK=2 /UG=Rn.66286 /UG_TITLE=ESTs, Moderately similar to FKB5 MOUSE 51 KDA FK506-BINDING PROTEIN (M.musculus) BI284255 FK506 binding protein 5 Fkbp5 361810 NM_001012174 0006457 // protein folding // inferred from electronic annotation 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // not recorded 1380612_at BI294934 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294934 /DB_XREF=gi:14957874 /DB_XREF=UI-R-DK0-ced-g-11-0-UI.s1 /CLONE=UI-R-DK0-ced-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.69600.1 /TIER=ConsEnd /STK=2 /UG=Rn.69600 /UG_TITLE=ESTs BI294934 1380613_at BM390334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390334 /DB_XREF=gi:18190387 /DB_XREF=UI-R-CN1-cjq-k-24-0-UI.s1 /CLONE=UI-R-CN1-cjq-k-24-0-UI /FEA=EST /CNT=2 /TID=Rn.56559.1 /TIER=ConsEnd /STK=2 /UG=Rn.56559 /UG_TITLE=ESTs BM390334 1380614_at BM385169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385169 /DB_XREF=gi:18185222 /DB_XREF=UI-R-CN1-cjm-n-04-0-UI.s2 /CLONE=UI-R-CN1-cjm-n-04-0-UI /FEA=EST /CNT=2 /TID=Rn.79325.1 /TIER=ConsEnd /STK=2 /UG=Rn.79325 /UG_TITLE=ESTs BM385169 1380615_at BF399600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399600 /DB_XREF=gi:11384608 /DB_XREF=UI-R-CA0-bhu-a-03-0-UI.s2 /CLONE=UI-R-CA0-bhu-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.57537.1 /TIER=ConsEnd /STK=2 /UG=Rn.57537 /UG_TITLE=ESTs BF399600 1380616_at BI294748 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294748 /DB_XREF=gi:14957504 /DB_XREF=UI-R-DK0-ceb-f-06-0-UI.s1 /CLONE=UI-R-DK0-ceb-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.50976.1 /TIER=ConsEnd /STK=2 /UG=Rn.50976 /UG_TITLE=ESTs BI294748 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 St8sia4 116696 NM_053914 0006486 // protein glycosylation // inferred from electronic annotation /// 0007162 // negative regulation of cell adhesion // traceable author statement 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation 0003828 // alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity // inferred from electronic annotation /// 0008373 // sialyltransferase activity // traceable author statement /// 0008373 // sialyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1380617_at BI294743 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294743 /DB_XREF=gi:14957494 /DB_XREF=UI-R-DK0-ceb-e-12-0-UI.s1 /CLONE=UI-R-DK0-ceb-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.16094.1 /TIER=ConsEnd /STK=2 /UG=Rn.16094 /UG_TITLE=ESTs, Weakly similar to A58583 testosterone-resistant immunity-associated protein IAP38 - mouse (M.musculus) BI294743 GTPase, IMAP family member 5 Gimap5 246774 NM_001033913 /// NM_145680 0001659 // temperature homeostasis // inferred from mutant phenotype /// 0002729 // positive regulation of natural killer cell cytokine production // inferred from mutant phenotype /// 0002925 // positive regulation of humoral immune response mediated by circulating immunoglobulin // inferred from mutant phenotype /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from mutant phenotype /// 0030217 // T cell differentiation // inferred from expression pattern /// 0032689 // negative regulation of interferon-gamma production // inferred from mutant phenotype /// 0032831 // positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation // inferred from mutant phenotype /// 0043011 // myeloid dendritic cell differentiation // inferred from mutant phenotype /// 0043029 // T cell homeostasis // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0045019 // negative regulation of nitric oxide biosynthetic process // inferred from mutant phenotype /// 0045588 // positive regulation of gamma-delta T cell differentiation // inferred from mutant phenotype /// 0045838 // positive regulation of membrane potential // inferred from mutant phenotype /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // inferred from mutant phenotype /// 0046902 // regulation of mitochondrial membrane permeability // inferred from mutant phenotype /// 0050868 // negative regulation of T cell activation // inferred from mutant phenotype /// 0050995 // negative regulation of lipid catabolic process // inferred from mutant phenotype 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1380618_at AI178792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178792 /DB_XREF=gi:3729430 /DB_XREF=EST222474 /CLONE=RSPBM65 /FEA=EST /CNT=2 /TID=Rn.13899.1 /TIER=ConsEnd /STK=2 /UG=Rn.13899 /UG_TITLE=ESTs AI178792 1380619_at AI177390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177390 /DB_XREF=gi:3728028 /DB_XREF=EST221010 /CLONE=RPLBY49 /FEA=EST /CNT=2 /TID=Rn.29096.1 /TIER=ConsEnd /STK=2 /UG=Rn.29096 /UG_TITLE=ESTs AI177390 similar to RIKEN cDNA 3110001I22 RGD1305537 363528 NM_001108822 1380620_at BF405053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405053 /DB_XREF=gi:11393028 /DB_XREF=UI-R-CA1-bip-a-09-0-UI.s1 /CLONE=UI-R-CA1-bip-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.51750.1 /TIER=ConsEnd /STK=2 /UG=Rn.51750 /UG_TITLE=ESTs BF405053 1380621_at BI289400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289400 /DB_XREF=gi:14946930 /DB_XREF=UI-R-DK0-cfg-e-05-0-UI.s1 /CLONE=UI-R-DK0-cfg-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.27239.1 /TIER=ConsEnd /STK=2 /UG=Rn.27239 /UG_TITLE=ESTs, Weakly similar to FLK RAT TYROSINE-PROTEIN KINASE FLK (R.norvegicus) BI289400 feline sarcoma oncogene Fes 361597 NM_001108488 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1380622_at BI289578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289578 /DB_XREF=gi:14947292 /DB_XREF=UI-R-DK0-cff-f-10-0-UI.s1 /CLONE=UI-R-DK0-cff-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.26918.1 /TIER=ConsEnd /STK=2 /UG=Rn.26918 /UG_TITLE=ESTs BI289578 1380623_at BM389775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389775 /DB_XREF=gi:18189828 /DB_XREF=UI-R-CN1-cjp-b-13-0-UI.s1 /CLONE=UI-R-CN1-cjp-b-13-0-UI /FEA=EST /CNT=2 /TID=Rn.51722.1 /TIER=ConsEnd /STK=2 /UG=Rn.51722 /UG_TITLE=ESTs, Moderately similar to TFZ_HUMAN TAFAZZIN (H.sapiens) BM389775 tafazzin Taz 363521 NM_001025748 0001933 // negative regulation of protein phosphorylation // not recorded /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006936 // muscle contraction // not recorded /// 0007507 // heart development // not recorded /// 0007519 // skeletal muscle tissue development // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded /// 0032049 // cardiolipin biosynthetic process // not recorded /// 0032981 // mitochondrial respiratory chain complex I assembly // not recorded /// 0035329 // hippo signaling cascade // not recorded /// 0035414 // negative regulation of catenin protein nuclear translocation // not recorded /// 0042407 // cristae formation // not recorded /// 0042775 // mitochondrial ATP synthesis coupled electron transport // not recorded /// 0048738 // cardiac muscle tissue development // not recorded /// 0060048 // cardiac muscle contraction // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0047184 // 1-acylglycerophosphocholine O-acyltransferase activity // not recorded 1380624_at BM387033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387033 /DB_XREF=gi:18187086 /DB_XREF=UI-R-CN1-cji-a-10-0-UI.s1 /CLONE=UI-R-CN1-cji-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.81910.1 /TIER=ConsEnd /STK=2 /UG=Rn.81910 /UG_TITLE=ESTs BM387033 1380625_at BE109276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109276 /DB_XREF=gi:8501381 /DB_XREF=UI-R-BS1-azd-h-09-0-UI.s1 /CLONE=UI-R-BS1-azd-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.51702.1 /TIER=ConsEnd /STK=2 /UG=Rn.51702 /UG_TITLE=ESTs BE109276 1380626_at BF404596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404596 /DB_XREF=gi:11392571 /DB_XREF=UI-R-CA1-bih-c-11-0-UI.s1 /CLONE=UI-R-CA1-bih-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.60552.1 /TIER=ConsEnd /STK=2 /UG=Rn.60552 /UG_TITLE=ESTs BF404596 1380627_at BF404531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404531 /DB_XREF=gi:11392471 /DB_XREF=UI-R-CA1-big-b-02-0-UI.s1 /CLONE=UI-R-CA1-big-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.61968.1 /TIER=ConsEnd /STK=2 /UG=Rn.61968 /UG_TITLE=ESTs BF404531 1380628_at BM385749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385749 /DB_XREF=gi:18185802 /DB_XREF=UI-R-CN1-clx-j-03-0-UI.s1 /CLONE=UI-R-CN1-clx-j-03-0-UI /FEA=EST /CNT=2 /TID=Rn.43921.1 /TIER=ConsEnd /STK=2 /UG=Rn.43921 /UG_TITLE=ESTs BM385749 keratin 34 Krt34 303528 NM_001008758 0005882 // intermediate filament // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1380629_at BF404621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404621 /DB_XREF=gi:11392596 /DB_XREF=UI-R-CA1-bih-f-08-0-UI.s1 /CLONE=UI-R-CA1-bih-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.62527.1 /TIER=ConsEnd /STK=2 /UG=Rn.62527 /UG_TITLE=ESTs BF404621 1380630_at BM389720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389720 /DB_XREF=gi:18189773 /DB_XREF=UI-R-CN1-cjp-g-20-0-UI.s1 /CLONE=UI-R-CN1-cjp-g-20-0-UI /FEA=EST /CNT=2 /TID=Rn.67377.1 /TIER=ConsEnd /STK=2 /UG=Rn.67377 /UG_TITLE=ESTs BM389720 1380631_at BM384935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384935 /DB_XREF=gi:18184988 /DB_XREF=UI-R-CN1-cjl-d-20-0-UI.s2 /CLONE=UI-R-CN1-cjl-d-20-0-UI /FEA=EST /CNT=2 /TID=Rn.42519.1 /TIER=ConsEnd /STK=2 /UG=Rn.42519 /UG_TITLE=ESTs BM384935 rCG30986-like LOC100366273 100366273 XM_002726656 /// XM_002726657 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0044237 // cellular metabolic process // inferred from electronic annotation 0000176 // nuclear exosome (RNase complex) // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0008408 // 3'-5' exonuclease activity // inferred from electronic annotation 1380632_at BE112962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112962 /DB_XREF=gi:8505067 /DB_XREF=UI-R-BJ1-awa-h-02-0-UI.s1 /CLONE=UI-R-BJ1-awa-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.52139.1 /TIER=ConsEnd /STK=2 /UG=Rn.52139 /UG_TITLE=ESTs BE112962 1380633_at BG381596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381596 /DB_XREF=gi:13306068 /DB_XREF=UI-R-CT0-bud-b-08-0-UI.s1 /CLONE=UI-R-CT0-bud-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.56244.1 /TIER=ConsEnd /STK=2 /UG=Rn.56244 /UG_TITLE=ESTs BG381596 1380634_at AI171378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171378 /DB_XREF=gi:3711418 /DB_XREF=EST217334 /CLONE=RMUBJ94 /FEA=EST /CNT=2 /TID=Rn.24297.1 /TIER=ConsEnd /STK=2 /UG=Rn.24297 /UG_TITLE=ESTs AI171378 1380635_at BI275816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275816 /DB_XREF=gi:14920110 /DB_XREF=UI-R-CX0-bxg-h-09-0-UI.s1 /CLONE=UI-R-CX0-bxg-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.27296.1 /TIER=ConsEnd /STK=2 /UG=Rn.27296 /UG_TITLE=ESTs BI275816 1380636_at BM390144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390144 /DB_XREF=gi:18190197 /DB_XREF=UI-R-CN1-cjp-j-10-0-UI.s1 /CLONE=UI-R-CN1-cjp-j-10-0-UI /FEA=EST /CNT=2 /TID=Rn.66513.1 /TIER=ConsEnd /STK=2 /UG=Rn.66513 /UG_TITLE=ESTs, Moderately similar to LOXP MOUSE ARACHIDONATE 12-LIPOXYGENASE, PLATELET-TYPE (M.musculus) BM390144 arachidonate 12-lipoxygenase Alox12 287454 NM_001105798 0006691 // leukotriene metabolic process // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006928 // cellular component movement // inferred from electronic annotation /// 0006928 // cellular component movement // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0010595 // positive regulation of endothelial cell migration // inferred from mutant phenotype /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0019395 // fatty acid oxidation // inferred from electronic annotation /// 0019395 // fatty acid oxidation // not recorded /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0030307 // positive regulation of cell growth // not recorded /// 0030307 // positive regulation of cell growth // inferred from electronic annotation /// 0031342 // negative regulation of cell killing // inferred from mutant phenotype /// 0031343 // positive regulation of cell killing // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0043280 // positive regulation of caspase activity // inferred from mutant phenotype /// 0045603 // positive regulation of endothelial cell differentiation // inferred from mutant phenotype /// 0045785 // positive regulation of cell adhesion // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // not recorded /// 0051789 // response to protein stimulus // inferred from mutant phenotype /// 0051901 // positive regulation of mitochondrial depolarization // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042383 // sarcolemma // not recorded 0004052 // arachidonate 12-lipoxygenase activity // inferred from mutant phenotype /// 0004052 // arachidonate 12-lipoxygenase activity // not recorded /// 0004052 // arachidonate 12-lipoxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016165 // lipoxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380637_at AI409069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409069 /DB_XREF=gi:4252573 /DB_XREF=EST237361 /CLONE=RKIDO54 /FEA=EST /CNT=2 /TID=Rn.18144.1 /TIER=ConsEnd /STK=2 /UG=Rn.18144 /UG_TITLE=ESTs AI409069 multiple EGF-like-domains 11 Megf11 691517 XM_001078620 /// XM_002727066 1380638_at BI294907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294907 /DB_XREF=gi:14957820 /DB_XREF=UI-R-DK0-ced-e-07-0-UI.s1 /CLONE=UI-R-DK0-ced-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.58975.1 /TIER=ConsEnd /STK=2 /UG=Rn.58975 /UG_TITLE=ESTs BI294907 nuclear receptor coactivator 3 Ncoa3 84584 XM_001072953 /// XM_215947 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0033145 // positive regulation of steroid hormone receptor signaling pathway // inferred from mutant phenotype /// 0033148 // positive regulation of estrogen receptor signaling pathway // inferred from direct assay /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048589 // developmental growth // inferred from electronic annotation /// 0048589 // developmental growth // not recorded /// 0051091 // positive regulation of transcription factor activity // inferred from direct assay /// 0060068 // vagina development // inferred from electronic annotation /// 0060068 // vagina development // not recorded /// 0060744 // mammary gland branching involved in thelarche // inferred from electronic annotation /// 0060744 // mammary gland branching involved in thelarche // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016922 // ligand-dependent nuclear receptor binding // inferred from electronic annotation /// 0016922 // ligand-dependent nuclear receptor binding // not recorded /// 0030331 // estrogen receptor binding // inferred from physical interaction /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0035257 // nuclear hormone receptor binding // inferred from electronic annotation /// 0035257 // nuclear hormone receptor binding // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1380639_at BI296446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296446 /DB_XREF=gi:14960878 /DB_XREF=UI-R-CV2-cgr-c-09-0-UI.s1 /CLONE=UI-R-CV2-cgr-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.76390.1 /TIER=ConsEnd /STK=2 /UG=Rn.76390 /UG_TITLE=ESTs, Moderately similar to syntaxin 5a (Rattus norvegicus) (R.norvegicus) BI296446 syntaxin 5 Stx5 65134 NM_031704 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // not recorded 0000139 // Golgi membrane // inferred from mutant phenotype /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005783 // endoplasmic reticulum // inferred from mutant phenotype /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0033116 // ER-Golgi intermediate compartment membrane // inferred from electronic annotation 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005484 // SNAP receptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1380640_at BM389373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389373 /DB_XREF=gi:18189426 /DB_XREF=UI-R-CN1-cjk-e-13-0-UI.s1 /CLONE=UI-R-CN1-cjk-e-13-0-UI /FEA=EST /CNT=2 /TID=Rn.49823.1 /TIER=ConsEnd /STK=2 /UG=Rn.49823 /UG_TITLE=ESTs BM389373 1380641_at BF406179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406179 /DB_XREF=gi:11394154 /DB_XREF=UI-R-CA1-bjf-m-15-0-UI.s1 /CLONE=UI-R-CA1-bjf-m-15-0-UI /FEA=EST /CNT=2 /TID=Rn.51311.1 /TIER=ConsEnd /STK=2 /UG=Rn.51311 /UG_TITLE=ESTs BF406179 protocadherin beta 6 Pcdhb6 291653 NM_001014780 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1380642_at BE120332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120332 /DB_XREF=gi:8512437 /DB_XREF=UI-R-CA0-baq-b-12-0-UI.s1 /CLONE=UI-R-CA0-baq-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.50096.1 /TIER=ConsEnd /STK=2 /UG=Rn.50096 /UG_TITLE=ESTs BE120332 1380643_at BI277600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277600 /DB_XREF=gi:14923630 /DB_XREF=UI-R-CY0-bxt-b-10-0-UI.s1 /CLONE=UI-R-CY0-bxt-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.49747.1 /TIER=ConsEnd /STK=2 /UG=Rn.49747 /UG_TITLE=ESTs, Weakly similar to C05D11.7.p (Caenorhabditis elegans) (C.elegans) BI277600 patatin-like phospholipase domain containing 3 Pnpla3 362972 XR_085887 /// XR_086307 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0019432 // triglyceride biosynthetic process // not recorded /// 0019433 // triglyceride catabolic process // not recorded 0016020 // membrane // not recorded 0004623 // phospholipase A2 activity // not recorded /// 0004806 // triglyceride lipase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0051264 // mono-olein transacylation activity // not recorded /// 0051265 // diolein transacylation activity // not recorded 1380644_at AI178542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178542 /DB_XREF=gi:4135080 /DB_XREF=EST222218 /CLONE=RPLCS48 /FEA=EST /CNT=2 /TID=Rn.58981.1 /TIER=ConsEnd /STK=2 /UG=Rn.58981 /UG_TITLE=ESTs AI178542 1380645_at BF396136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396136 /DB_XREF=gi:11381108 /DB_XREF=UI-R-CA1-bcb-g-02-0-UI.s1 /CLONE=UI-R-CA1-bcb-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.58537.1 /TIER=ConsEnd /STK=2 /UG=Rn.58537 /UG_TITLE=ESTs BF396136 1380646_at BM382849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM382849 /DB_XREF=gi:18182902 /DB_XREF=UI-R-BT1-bko-e-09-0-UI.s1 /CLONE=UI-R-BT1-bko-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.58008.1 /TIER=ConsEnd /STK=2 /UG=Rn.58008 /UG_TITLE=ESTs BM382849 ELMO/CED-12 domain containing 2 Elmod2 688581 NM_001109506 0006909 // phagocytosis // inferred from electronic annotation 0005856 // cytoskeleton // inferred from electronic annotation 1380647_at BF413183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413183 /DB_XREF=gi:11401172 /DB_XREF=UI-R-BT1-bnx-f-11-0-UI.s1 /CLONE=UI-R-BT1-bnx-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.62274.1 /TIER=ConsEnd /STK=2 /UG=Rn.62274 /UG_TITLE=ESTs BF413183 1380648_at AI101352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101352 /DB_XREF=gi:3704633 /DB_XREF=EST210641 /CLONE=RBRBL96 /FEA=EST /CNT=2 /TID=Rn.27941.1 /TIER=ConsEnd /STK=2 /UG=Rn.27941 /UG_TITLE=ESTs AI101352 1380649_at AI236606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236606 /DB_XREF=gi:3830112 /DB_XREF=EST233168 /CLONE=ROVDI27 /FEA=EST /CNT=2 /TID=Rn.73783.1 /TIER=ConsEnd /STK=2 /UG=Rn.73783 /UG_TITLE=ESTs AI236606 1380650_at AA892317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892317 /DB_XREF=gi:3019196 /DB_XREF=EST196120 /CLONE=RKIAO95 /FEA=EST /CNT=2 /TID=Rn.14749.1 /TIER=ConsEnd /STK=2 /UG=Rn.14749 /UG_TITLE=ESTs, Weakly similar to RIP3 MOUSE P116 RHO-INTERACTING PROTEIN (M.musculus) AA892317 TRIO and F-actin binding protein Triobp 362956 XM_001065869 /// XM_001076290 /// XM_002726947 /// XM_002729831 0005515 // protein binding // not recorded /// 0031625 // ubiquitin protein ligase binding // not recorded 1380651_at BI296352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296352 /DB_XREF=gi:14960697 /DB_XREF=UI-R-DK0-cez-d-03-0-UI.s1 /CLONE=UI-R-DK0-cez-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.53030.1 /TIER=ConsEnd /STK=2 /UG=Rn.53030 /UG_TITLE=ESTs BI296352 ring finger protein (C3H2C3 type) 6 Rnf6 304271 NM_001107118 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0030517 // negative regulation of axon extension // not recorded /// 0032583 // regulation of gene-specific transcription // not recorded /// 0044314 // protein K27-linked ubiquitination // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0060765 // regulation of androgen receptor signaling pathway // not recorded /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0085020 // protein K6-linked ubiquitination // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0016605 // PML body // not recorded /// 0030424 // axon // not recorded 0003677 // DNA binding // not recorded /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // not recorded 1380652_at BF396394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396394 /DB_XREF=gi:11381366 /DB_XREF=UI-R-BS2-bdx-f-03-0-UI.s1 /CLONE=UI-R-BS2-bdx-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.62772.1 /TIER=ConsEnd /STK=2 /UG=Rn.62772 /UG_TITLE=ESTs BF396394 1380653_at BE110230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110230 /DB_XREF=gi:8502335 /DB_XREF=UI-R-CA0-axk-e-12-0-UI.s1 /CLONE=UI-R-CA0-axk-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.51841.1 /TIER=ConsEnd /STK=2 /UG=Rn.51841 /UG_TITLE=ESTs BE110230 1380654_at BI295933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295933 /DB_XREF=gi:14959874 /DB_XREF=UI-R-DK0-cfc-d-12-0-UI.s1 /CLONE=UI-R-DK0-cfc-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.73618.1 /TIER=ConsEnd /STK=2 /UG=Rn.73618 /UG_TITLE=ESTs BI295933 1380655_at AI317878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI317878 /DB_XREF=gi:4033145 /DB_XREF=EST234549 /CLONE=RPPAA94 /FEA=EST /CNT=2 /TID=Rn.63172.1 /TIER=ConsEnd /STK=2 /UG=Rn.63172 /UG_TITLE=ESTs AI317878 renal tumor antigen Rage 362787 NM_001010965 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1380656_at BM390299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390299 /DB_XREF=gi:18190352 /DB_XREF=UI-R-CN1-cjq-e-16-0-UI.s1 /CLONE=UI-R-CN1-cjq-e-16-0-UI /FEA=EST /CNT=2 /TID=Rn.21316.1 /TIER=ConsEnd /STK=2 /UG=Rn.21316 /UG_TITLE=ESTs BM390299 1380657_at AI180398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180398 /DB_XREF=gi:3731036 /DB_XREF=EST224142 /CLONE=RSPCX18 /FEA=EST /CNT=2 /TID=Rn.29413.1 /TIER=ConsEnd /STK=2 /UG=Rn.29413 /UG_TITLE=ESTs AI180398 1380658_at BF402406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402406 /DB_XREF=gi:11390381 /DB_XREF=UI-R-CA0-bhn-h-03-0-UI.s1 /CLONE=UI-R-CA0-bhn-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.60039.1 /TIER=ConsEnd /STK=2 /UG=Rn.60039 /UG_TITLE=ESTs BF402406 1380659_at BM386141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386141 /DB_XREF=gi:18186194 /DB_XREF=UI-R-CN1-cjf-g-07-0-UI.s1 /CLONE=UI-R-CN1-cjf-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.82645.1 /TIER=ConsEnd /STK=2 /UG=Rn.82645 /UG_TITLE=ESTs BM386141 1380660_at BI295181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295181 /DB_XREF=gi:14958369 /DB_XREF=UI-R-DK0-ceg-g-03-0-UI.s1 /CLONE=UI-R-DK0-ceg-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.52621.1 /TIER=ConsEnd /STK=2 /UG=Rn.52621 /UG_TITLE=ESTs BI295181 1380661_at BF405873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405873 /DB_XREF=gi:11393848 /DB_XREF=UI-R-CA1-bii-a-06-0-UI.s1 /CLONE=UI-R-CA1-bii-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.66633.1 /TIER=ConsEnd /STK=2 /UG=Rn.66633 /UG_TITLE=ESTs BF405873 phospholipase D family, member 3 Pld3 361527 NM_001012167 0008152 // metabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004630 // phospholipase D activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0070290 // NAPE-specific phospholipase D activity // inferred from electronic annotation 1380662_at BM389613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389613 /DB_XREF=gi:18189666 /DB_XREF=UI-R-CN1-cjo-c-17-0-UI.s1 /CLONE=UI-R-CN1-cjo-c-17-0-UI /FEA=EST /CNT=2 /TID=Rn.54290.1 /TIER=ConsEnd /STK=2 /UG=Rn.54290 /UG_TITLE=ESTs BM389613 1380663_at BM390208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390208 /DB_XREF=gi:18190261 /DB_XREF=UI-R-CN1-cjq-e-03-0-UI.s1 /CLONE=UI-R-CN1-cjq-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.68899.1 /TIER=ConsEnd /STK=2 /UG=Rn.68899 /UG_TITLE=ESTs BM390208 F-box and leucine-rich repeat protein 19 Fbxl19 308999 NM_001107552 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380664_at BF416244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416244 /DB_XREF=gi:11404233 /DB_XREF=UI-R-CA0-bkr-b-11-0-UI.s1 /CLONE=UI-R-CA0-bkr-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.62963.1 /TIER=ConsEnd /STK=2 /UG=Rn.62963 /UG_TITLE=ESTs BF416244 1380665_at BF418059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418059 /DB_XREF=gi:11406048 /DB_XREF=UI-R-CA1-blv-h-10-0-UI.s1 /CLONE=UI-R-CA1-blv-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.63349.1 /TIER=ConsEnd /STK=2 /UG=Rn.63349 /UG_TITLE=ESTs BF418059 1380666_at BI284181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284181 /DB_XREF=gi:14936628 /DB_XREF=UI-R-CX0s-ccn-b-08-0-UI.s1 /CLONE=UI-R-CX0s-ccn-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.79266.1 /TIER=ConsEnd /STK=2 /UG=Rn.79266 /UG_TITLE=ESTs BI284181 MON1 homolog b (yeast) Mon1b 307868 NM_001107433 0005515 // protein binding // not recorded 1380667_at AW251634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251634 /DB_XREF=gi:6595225 /DB_XREF=UI-R-BJ0-adp-a-12-0-UI.s1 /CLONE=UI-R-BJ0-adp-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.44671.1 /TIER=ConsEnd /STK=2 /UG=Rn.44671 /UG_TITLE=ESTs AW251634 similar to hypothetical protein FLJ13045 RGD1307615 362084 NM_001108573 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1380668_at BI275851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275851 /DB_XREF=gi:14920185 /DB_XREF=UI-R-CX0-bxh-c-10-0-UI.s1 /CLONE=UI-R-CX0-bxh-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.33980.1 /TIER=ConsEnd /STK=2 /UG=Rn.33980 /UG_TITLE=ESTs BI275851 Hypothetical LOC316976 MGC72974 316976 NM_198772 0006479 // protein methylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0008276 // protein methyltransferase activity // inferred from electronic annotation 1380669_at BI292034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292034 /DB_XREF=gi:14952143 /DB_XREF=UI-R-DN0-ciu-e-18-0-UI.s1 /CLONE=UI-R-DN0-ciu-e-18-0-UI /FEA=EST /CNT=2 /TID=Rn.52433.1 /TIER=ConsEnd /STK=2 /UG=Rn.52433 /UG_TITLE=ESTs BI292034 1380670_at BE095613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095613 /DB_XREF=gi:8486544 /DB_XREF=UI-R-BO1-apo-b-02-0-UI.s1 /CLONE=UI-R-BO1-apo-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.66639.1 /TIER=ConsEnd /STK=2 /UG=Rn.66639 /UG_TITLE=ESTs BE095613 1380671_at BF409069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409069 /DB_XREF=gi:11397044 /DB_XREF=UI-R-BT1-bkl-f-06-0-UI.s1 /CLONE=UI-R-BT1-bkl-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.28722.1 /TIER=ConsEnd /STK=2 /UG=Rn.28722 /UG_TITLE=ESTs BF409069 1380672_at AI406316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406316 /DB_XREF=gi:4249820 /DB_XREF=EST234602 /CLONE=RBRDM63 /FEA=EST /CNT=2 /TID=Rn.43622.1 /TIER=ConsEnd /STK=2 /UG=Rn.43622 /UG_TITLE=ESTs AI406316 1380673_at BI295852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295852 /DB_XREF=gi:14959714 /DB_XREF=UI-R-DK0-cfb-d-08-0-UI.s1 /CLONE=UI-R-DK0-cfb-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.56639.1 /TIER=ConsEnd /STK=2 /UG=Rn.56639 /UG_TITLE=ESTs BI295852 1380674_at BM385358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385358 /DB_XREF=gi:18185411 /DB_XREF=UI-R-CN1-clv-k-14-0-UI.s1 /CLONE=UI-R-CN1-clv-k-14-0-UI /FEA=EST /CNT=2 /TID=Rn.81576.1 /TIER=ConsEnd /STK=2 /UG=Rn.81576 /UG_TITLE=ESTs BM385358 1380675_s_at BM385197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385197 /DB_XREF=gi:18185250 /DB_XREF=UI-R-CN1-cjs-d-12-0-UI.s2 /CLONE=UI-R-CN1-cjs-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.19900.1 /TIER=ConsEnd /STK=2 /UG=Rn.19900 /UG_TITLE=ESTs, Weakly similar to A Chain A, Crystal Structure Of S-Glutathiolated Carbonic Anhydrase Iii (R.norvegicus) BM385197 carbonic anhydrase 11 Car11 308588 NM_175708 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded 1380676_at BF390778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390778 /DB_XREF=gi:11375625 /DB_XREF=UI-R-CA1-bcp-d-02-0-UI.s1 /CLONE=UI-R-CA1-bcp-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.57271.1 /TIER=ConsEnd /STK=2 /UG=Rn.57271 /UG_TITLE=ESTs BF390778 1380677_at BF401719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401719 /DB_XREF=gi:11389694 /DB_XREF=UI-R-CA0-bgn-h-01-0-UI.s1 /CLONE=UI-R-CA0-bgn-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.58750.1 /TIER=ConsEnd /STK=2 /UG=Rn.58750 /UG_TITLE=ESTs BF401719 1380678_at BF400842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400842 /DB_XREF=gi:11388782 /DB_XREF=UI-R-CA0-bhf-h-02-0-UI.s1 /CLONE=UI-R-CA0-bhf-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.59647.1 /TIER=ConsEnd /STK=2 /UG=Rn.59647 /UG_TITLE=ESTs BF400842 1380679_at BI289402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289402 /DB_XREF=gi:14946934 /DB_XREF=UI-R-DK0-cfg-e-07-0-UI.s1 /CLONE=UI-R-DK0-cfg-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.71957.1 /TIER=ConsEnd /STK=2 /UG=Rn.71957 /UG_TITLE=ESTs BI289402 1380680_at BF400675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400675 /DB_XREF=gi:11388650 /DB_XREF=UI-R-CA0-bhe-b-07-0-UI.s1 /CLONE=UI-R-CA0-bhe-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.59047.1 /TIER=ConsEnd /STK=2 /UG=Rn.59047 /UG_TITLE=ESTs BF400675 1380681_at BF398407 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398407 /DB_XREF=gi:11383396 /DB_XREF=UI-R-BS2-beo-e-04-0-UI.s1 /CLONE=UI-R-BS2-beo-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.49526.1 /TIER=ConsEnd /STK=2 /UG=Rn.49526 /UG_TITLE=ESTs BF398407 ring finger protein 180 Rnf180 685384 NM_001134986 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0031227 // intrinsic to endoplasmic reticulum membrane // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0031624 // ubiquitin conjugating enzyme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380682_at BF396302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396302 /DB_XREF=gi:11381274 /DB_XREF=UI-R-BS2-bdw-f-02-0-UI.s1 /CLONE=UI-R-BS2-bdw-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.50714.1 /TIER=ConsEnd /STK=2 /UG=Rn.50714 /UG_TITLE=ESTs BF396302 mex3 homolog B (C. elegans) Mex3b 308790 NM_001191626 /// XM_001068105 /// XM_218846 1380683_at BE107433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107433 /DB_XREF=gi:8499538 /DB_XREF=UI-R-BS1-ayt-f-06-0-UI.s1 /CLONE=UI-R-BS1-ayt-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.40682.1 /TIER=ConsEnd /STK=2 /UG=Rn.40682 /UG_TITLE=ESTs, Highly similar to A48758 protein-tyrosine-phosphatase (R.norvegicus) BE107433 protein tyrosine phosphatase, receptor type, D Ptprd 313278 XM_001067936 /// XM_233065 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1380684_at BI303657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303657 /DB_XREF=gi:14979937 /DB_XREF=UI-R-DQ0-cja-p-06-0-UI.s1 /CLONE=UI-R-DQ0-cja-p-06-0-UI /FEA=EST /CNT=2 /TID=Rn.77457.1 /TIER=ConsEnd /STK=2 /UG=Rn.77457 /UG_TITLE=ESTs BI303657 1380685_at AI103408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103408 /DB_XREF=gi:4134167 /DB_XREF=EST212697 /CLONE=REMCB59 /FEA=EST /CNT=2 /TID=Rn.23930.1 /TIER=ConsEnd /STK=2 /UG=Rn.23930 /UG_TITLE=ESTs AI103408 1380686_at BM385607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385607 /DB_XREF=gi:18185660 /DB_XREF=UI-R-DM1-ckd-j-07-0-UI.s1 /CLONE=UI-R-DM1-ckd-j-07-0-UI /FEA=EST /CNT=2 /TID=Rn.69908.1 /TIER=ConsEnd /STK=2 /UG=Rn.69908 /UG_TITLE=ESTs BM385607 1380687_at BI295176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295176 /DB_XREF=gi:14958359 /DB_XREF=UI-R-DK0-ceg-f-09-0-UI.s1 /CLONE=UI-R-DK0-ceg-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.13799.1 /TIER=ConsEnd /STK=2 /UG=Rn.13799 /UG_TITLE=ESTs BI295176 1380688_at BI283107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283107 /DB_XREF=gi:14934524 /DB_XREF=UI-R-CU0s-cca-b-01-0-UI.s1 /CLONE=UI-R-CU0s-cca-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.66735.1 /TIER=ConsEnd /STK=2 /UG=Rn.66735 /UG_TITLE=ESTs, Weakly similar to T46260 hypothetical protein DKFZp761D2324.1 (H.sapiens) BI283107 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4 Galntl4 293181 NM_001079884 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005529 // sugar binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1380689_at BM389555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389555 /DB_XREF=gi:18189608 /DB_XREF=UI-R-CN1-cjn-h-16-0-UI.s1 /CLONE=UI-R-CN1-cjn-h-16-0-UI /FEA=EST /CNT=2 /TID=Rn.81677.1 /TIER=ConsEnd /STK=2 /UG=Rn.81677 /UG_TITLE=ESTs BM389555 1380690_at AW534142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534142 /DB_XREF=gi:7176556 /DB_XREF=UI-R-C4-alp-f-11-0-UI.s1 /CLONE=UI-R-C4-alp-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.34675.1 /TIER=ConsEnd /STK=2 /UG=Rn.34675 /UG_TITLE=ESTs AW534142 1380691_at BM392272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392272 /DB_XREF=gi:18192325 /DB_XREF=UI-R-DO1-ckp-n-11-0-UI.s1 /CLONE=UI-R-DO1-ckp-n-11-0-UI /FEA=EST /CNT=2 /TID=Rn.45590.1 /TIER=ConsEnd /STK=2 /UG=Rn.45590 /UG_TITLE=ESTs BM392272 1380692_at BM387127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387127 /DB_XREF=gi:18187180 /DB_XREF=UI-R-CN1-cji-b-19-0-UI.s1 /CLONE=UI-R-CN1-cji-b-19-0-UI /FEA=EST /CNT=2 /TID=Rn.50630.1 /TIER=ConsEnd /STK=2 /UG=Rn.50630 /UG_TITLE=ESTs BM387127 1380693_at BF415976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415976 /DB_XREF=gi:11403965 /DB_XREF=UI-R-CA0-bkp-e-10-0-UI.s1 /CLONE=UI-R-CA0-bkp-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.62888.1 /TIER=ConsEnd /STK=2 /UG=Rn.62888 /UG_TITLE=ESTs BF415976 1380694_at BM390450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390450 /DB_XREF=gi:18190503 /DB_XREF=UI-R-CN1-cjq-d-18-0-UI.s1 /CLONE=UI-R-CN1-cjq-d-18-0-UI /FEA=EST /CNT=2 /TID=Rn.78728.1 /TIER=ConsEnd /STK=2 /UG=Rn.78728 /UG_TITLE=ESTs BM390450 1380695_at BM386352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386352 /DB_XREF=gi:18186405 /DB_XREF=UI-R-CN1-cjf-p-21-0-UI.s1 /CLONE=UI-R-CN1-cjf-p-21-0-UI /FEA=EST /CNT=2 /TID=Rn.81764.1 /TIER=ConsEnd /STK=2 /UG=Rn.81764 /UG_TITLE=ESTs BM386352 1380696_at AW530527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530527 /DB_XREF=gi:7172941 /DB_XREF=UI-R-BT1-akp-b-07-0-UI.s1 /CLONE=UI-R-BT1-akp-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.68016.1 /TIER=ConsEnd /STK=2 /UG=Rn.68016 /UG_TITLE=ESTs AW530527 family with sequence similarity 102, member B Fam102b 365903 NM_001163568 1380697_at BE107803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107803 /DB_XREF=gi:8499908 /DB_XREF=UI-R-CA0-awx-a-12-0-UI.s1 /CLONE=UI-R-CA0-awx-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.63336.1 /TIER=ConsEnd /STK=2 /UG=Rn.63336 /UG_TITLE=ESTs BE107803 1380698_at BE108305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108305 /DB_XREF=gi:8500410 /DB_XREF=UI-R-BS1-ayx-g-04-0-UI.s1 /CLONE=UI-R-BS1-ayx-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.51449.1 /TIER=ConsEnd /STK=2 /UG=Rn.51449 /UG_TITLE=ESTs BE108305 1380699_at BE110761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110761 /DB_XREF=gi:8502831 /DB_XREF=UI-R-BJ1-avd-c-09-0-UI.s1 /CLONE=UI-R-BJ1-avd-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.48240.1 /TIER=ConsEnd /STK=2 /UG=Rn.48240 /UG_TITLE=ESTs BE110761 1380700_at BM391868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391868 /DB_XREF=gi:18191921 /DB_XREF=UI-R-DO1-cmk-l-06-0-UI.s1 /CLONE=UI-R-DO1-cmk-l-06-0-UI /FEA=EST /CNT=2 /TID=Rn.61147.1 /TIER=ConsEnd /STK=2 /UG=Rn.61147 /UG_TITLE=ESTs BM391868 Rho GTPase activating protein 27 Arhgap27 303583 NM_198759 0006897 // endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0043089 // positive regulation of Cdc42 GTPase activity // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // inferred from mutant phenotype /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from direct assay /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from direct assay /// 0030675 // Rac GTPase activator activity // inferred from direct assay 1380701_at BF400722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400722 /DB_XREF=gi:11388697 /DB_XREF=UI-R-CA0-bhe-g-02-0-UI.s1 /CLONE=UI-R-CA0-bhe-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.61310.1 /TIER=ConsEnd /STK=2 /UG=Rn.61310 /UG_TITLE=ESTs BF400722 1380702_at BF403916 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403916 /DB_XREF=gi:11391891 /DB_XREF=UI-R-CA1-bjd-f-23-0-UI.s1 /CLONE=UI-R-CA1-bjd-f-23-0-UI /FEA=EST /CNT=2 /TID=Rn.62428.1 /TIER=ConsEnd /STK=2 /UG=Rn.62428 /UG_TITLE=ESTs BF403916 1380703_at BM386391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386391 /DB_XREF=gi:18186444 /DB_XREF=UI-R-CN1-cjf-h-12-0-UI.s1 /CLONE=UI-R-CN1-cjf-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.79575.1 /TIER=ConsEnd /STK=2 /UG=Rn.79575 /UG_TITLE=ESTs BM386391 1380704_a_at AI412161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412161 /DB_XREF=gi:4255665 /DB_XREF=EST240455 /CLONE=RKIEG95 /FEA=EST /CNT=2 /TID=Rn.15762.1 /TIER=ConsEnd /STK=2 /UG=Rn.15762 /UG_TITLE=ESTs AI412161 1380705_at AW523627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523627 /DB_XREF=gi:7166012 /DB_XREF=UI-R-BO0-aic-c-03-0-UI.s1 /CLONE=UI-R-BO0-aic-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.45693.1 /TIER=ConsEnd /STK=2 /UG=Rn.45693 /UG_TITLE=ESTs, Highly similar to A38919 hypothetical protein 1 (H.sapiens) AW523627 1380706_at AI071655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071655 /DB_XREF=gi:3397870 /DB_XREF=UI-R-C1-ku-b-10-0-UI.s2 /CLONE=UI-R-C1-ku-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.58464.1 /TIER=ConsEnd /STK=2 /UG=Rn.58464 /UG_TITLE=ESTs AI071655 Similar to mKIAA1450 protein RGD1562174 310538 XM_002725984 /// XM_227287 1380707_at BE113229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113229 /DB_XREF=gi:8505334 /DB_XREF=UI-R-BJ1-awd-a-09-0-UI.s1 /CLONE=UI-R-BJ1-awd-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.52167.1 /TIER=ConsEnd /STK=2 /UG=Rn.52167 /UG_TITLE=ESTs BE113229 similar to 2010321M09Rik protein RGD1359616 300782 NM_001007663 1380708_at BF396522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396522 /DB_XREF=gi:11381496 /DB_XREF=UI-R-BS2-bdz-b-03-0-UI.s1 /CLONE=UI-R-BS2-bdz-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.52602.1 /TIER=ConsEnd /STK=2 /UG=Rn.52602 /UG_TITLE=ESTs BF396522 1380709_at BF396288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396288 /DB_XREF=gi:11381260 /DB_XREF=UI-R-BS2-bdw-d-08-0-UI.s1 /CLONE=UI-R-BS2-bdw-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.58574.1 /TIER=ConsEnd /STK=2 /UG=Rn.58574 /UG_TITLE=ESTs BF396288 1380710_at BF418003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418003 /DB_XREF=gi:11406032 /DB_XREF=UI-R-CA1-blv-g-06-0-UI.s1 /CLONE=UI-R-CA1-blv-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.62149.1 /TIER=ConsEnd /STK=2 /UG=Rn.62149 /UG_TITLE=ESTs BF418003 1380711_at BF403307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403307 /DB_XREF=gi:11391282 /DB_XREF=UI-R-CA1-biy-a-24-0-UI.s1 /CLONE=UI-R-CA1-biy-a-24-0-UI /FEA=EST /CNT=2 /TID=Rn.62412.1 /TIER=ConsEnd /STK=2 /UG=Rn.62412 /UG_TITLE=ESTs BF403307 1380712_at AI406475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406475 /DB_XREF=gi:4249979 /DB_XREF=EST234761 /CLONE=RBRDN38 /FEA=EST /CNT=2 /TID=Rn.42970.1 /TIER=ConsEnd /STK=2 /UG=Rn.42970 /UG_TITLE=ESTs AI406475 1380713_at BG376879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376879 /DB_XREF=gi:13301351 /DB_XREF=UI-R-CA1-bli-d-06-0-UI.s1 /CLONE=UI-R-CA1-bli-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.52440.1 /TIER=ConsEnd /STK=2 /UG=Rn.52440 /UG_TITLE=ESTs BG376879 1380714_at AI600230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600230 /DB_XREF=gi:4609278 /DB_XREF=EST251933 /CLONE=REMEN63 /FEA=EST /CNT=2 /TID=Rn.40363.1 /TIER=ConsEnd /STK=2 /UG=Rn.40363 /UG_TITLE=ESTs AI600230 1380715_at BF400683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400683 /DB_XREF=gi:11388658 /DB_XREF=UI-R-CA0-bhe-c-04-0-UI.s1 /CLONE=UI-R-CA0-bhe-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.58457.1 /TIER=ConsEnd /STK=2 /UG=Rn.58457 /UG_TITLE=ESTs BF400683 1380716_at AI575015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575015 /DB_XREF=gi:4545011 /DB_XREF=UI-R-G0-um-b-12-0-UI.s1 /CLONE=UI-R-G0-um-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.38776.1 /TIER=ConsEnd /STK=2 /UG=Rn.38776 /UG_TITLE=ESTs AI575015 1380717_at BF397758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397758 /DB_XREF=gi:11382742 /DB_XREF=UI-R-BS2-bee-c-05-0-UI.s1 /CLONE=UI-R-BS2-bee-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.58892.1 /TIER=ConsEnd /STK=2 /UG=Rn.58892 /UG_TITLE=ESTs BF397758 1380718_at AI600021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600021 /DB_XREF=gi:4609069 /DB_XREF=EST251724 /CLONE=REMDO35 /FEA=EST /CNT=2 /TID=Rn.40495.1 /TIER=ConsEnd /STK=2 /UG=Rn.40495 /UG_TITLE=ESTs AI600021 1380719_at BF396220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396220 /DB_XREF=gi:11381157 /DB_XREF=UI-R-BS2-bdv-c-08-0-UI.s1 /CLONE=UI-R-BS2-bdv-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.58552.1 /TIER=ConsEnd /STK=2 /UG=Rn.58552 /UG_TITLE=ESTs BF396220 1380720_at BM385451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385451 /DB_XREF=gi:18185499 /DB_XREF=UI-R-CN1-clv-l-12-0-UI.s1 /CLONE=UI-R-CN1-clv-l-12-0-UI /FEA=EST /CNT=2 /TID=Rn.51894.1 /TIER=ConsEnd /STK=2 /UG=Rn.51894 /UG_TITLE=ESTs BM385451 1380721_at BE103115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103115 /DB_XREF=gi:8495214 /DB_XREF=UI-R-BX0-are-f-04-0-UI.s1 /CLONE=UI-R-BX0-are-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.43731.1 /TIER=ConsEnd /STK=2 /UG=Rn.43731 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) BE103115 1380722_at AA859912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859912 /DB_XREF=gi:4230448 /DB_XREF=UI-R-E0-cg-b-06-0-UI.s1 /CLONE=UI-R-E0-cg-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.61114.1 /TIER=ConsEnd /STK=2 /UG=Rn.61114 /UG_TITLE=ESTs AA859912 Similar to myosin XVIIIa LOC360570 360570 NM_001172137 /// XM_001080824 /// XM_002724521 /// XM_002727778 0016459 // myosin complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1380723_at AI179188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179188 /DB_XREF=gi:3729826 /DB_XREF=EST222875 /CLONE=RSPCD07 /FEA=EST /CNT=2 /TID=Rn.24204.1 /TIER=ConsEnd /STK=2 /UG=Rn.24204 /UG_TITLE=ESTs AI179188 1380724_at BE095844 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095844 /DB_XREF=gi:8486775 /DB_XREF=UI-R-BU0-apb-c-01-0-UI.s1 /CLONE=UI-R-BU0-apb-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.48935.1 /TIER=ConsEnd /STK=2 /UG=Rn.48935 /UG_TITLE=ESTs BE095844 1380725_at AW251317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251317 /DB_XREF=gi:6594908 /DB_XREF=UI-R-BJ0-adg-g-04-0-UI.s1 /CLONE=UI-R-BJ0-adg-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.44768.1 /TIER=ConsEnd /STK=2 /UG=Rn.44768 /UG_TITLE=ESTs, Highly similar to T4S9_MOUSE TRANSMEMBRANE 4 SUPERFAMILY, MEMBER 8 (TETRASPANIN 5) (TSPAN-5) (M.musculus) AW251317 tetraspanin 5 Tspan5 362048 NM_001004090 0007155 // cell adhesion // traceable author statement /// 0008283 // cell proliferation // traceable author statement 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 1380726_at BI290633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290633 /DB_XREF=gi:14949386 /DB_XREF=UI-R-DK0-cfx-e-09-0-UI.s1 /CLONE=UI-R-DK0-cfx-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.45067.1 /TIER=ConsEnd /STK=2 /UG=Rn.45067 /UG_TITLE=ESTs, Weakly similar to BONECARTILAGE PROTEOGLYCAN I PRECURSOR (R.norvegicus) BI290633 Asporin Aspn 306805 NM_001014008 0030282 // bone mineralization // inferred from electronic annotation /// 0030282 // bone mineralization // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0070171 // negative regulation of tooth mineralization // inferred from electronic annotation /// 0070171 // negative regulation of tooth mineralization // not recorded 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0031012 // extracellular matrix // not recorded /// 0046930 // pore complex // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015288 // porin activity // inferred from electronic annotation 1380727_at AW524544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524544 /DB_XREF=gi:7166929 /DB_XREF=UI-R-BO0-ahz-f-08-0-UI.s1 /CLONE=UI-R-BO0-ahz-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.45873.1 /TIER=ConsEnd /STK=2 /UG=Rn.45873 /UG_TITLE=ESTs AW524544 1380728_at BE118404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118404 /DB_XREF=gi:8510509 /DB_XREF=UI-R-BJ1-azp-c-03-0-UI.s1 /CLONE=UI-R-BJ1-azp-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.53909.1 /TIER=ConsEnd /STK=2 /UG=Rn.53909 /UG_TITLE=ESTs, Highly similar to DPY2 RAT DIHYDROPYRIMIDINASE RELATED PROTEIN-2 (R.norvegicus) BE118404 1380729_at BG376796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376796 /DB_XREF=gi:13301268 /DB_XREF=UI-R-CA1-blh-b-04-0-UI.s1 /CLONE=UI-R-CA1-blh-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.66419.1 /TIER=ConsEnd /STK=2 /UG=Rn.66419 /UG_TITLE=ESTs BG376796 1380730_at BE110564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110564 /DB_XREF=gi:8502669 /DB_XREF=UI-R-BJ1-avt-e-01-0-UI.s1 /CLONE=UI-R-BJ1-avt-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.57651.1 /TIER=ConsEnd /STK=2 /UG=Rn.57651 /UG_TITLE=ESTs, Moderately similar to CLATHRIN-COATED VESICLESYNAPTIC VESICLE PROTON PUMP 116 KD SUBUNIT (R.norvegicus) BE110564 ATPase, H+ transporting, lysosomal V0 subunit A2 Atp6v0a2 116455 NM_053775 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation 0001669 // acrosomal vesicle // not recorded /// 0033177 // proton-transporting two-sector ATPase complex, proton-transporting domain // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation 1380731_at BI290520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290520 /DB_XREF=gi:14949164 /DB_XREF=UI-R-DK0-cgd-c-02-0-UI.s1 /CLONE=UI-R-DK0-cgd-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.50582.1 /TIER=ConsEnd /STK=2 /UG=Rn.50582 /UG_TITLE=ESTs BI290520 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B Mgat5b 303693 NM_001107068 0016740 // transferase activity // inferred from electronic annotation 1380732_at BE107085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107085 /DB_XREF=gi:8499190 /DB_XREF=UI-R-BS1-ayp-f-08-0-UI.s1 /CLONE=UI-R-BS1-ayp-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.51109.1 /TIER=ConsEnd /STK=2 /UG=Rn.51109 /UG_TITLE=ESTs BE107085 1380733_at BI286088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286088 /DB_XREF=gi:14940386 /DB_XREF=UI-R-DD0-bzt-d-05-0-UI.s1 /CLONE=UI-R-DD0-bzt-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.72339.1 /TIER=ConsEnd /STK=2 /UG=Rn.72339 /UG_TITLE=ESTs, Weakly similar to KIAA0425 (H.sapiens) BI286088 similar to hypothetical protein FLJ20259 RGD1311095 301004 NM_001134532 1380734_at BM390049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390049 /DB_XREF=gi:18190102 /DB_XREF=UI-R-CN1-cjo-f-19-0-UI.s1 /CLONE=UI-R-CN1-cjo-f-19-0-UI /FEA=EST /CNT=2 /TID=Rn.78680.1 /TIER=ConsEnd /STK=2 /UG=Rn.78680 /UG_TITLE=ESTs BM390049 1380735_at BM385424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385424 /DB_XREF=gi:18185477 /DB_XREF=UI-R-CN1-clv-p-13-0-UI.s1 /CLONE=UI-R-CN1-clv-p-13-0-UI /FEA=EST /CNT=2 /TID=Rn.49729.1 /TIER=ConsEnd /STK=2 /UG=Rn.49729 /UG_TITLE=ESTs BM385424 1380736_at BF393053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393053 /DB_XREF=gi:11377913 /DB_XREF=UI-R-CA0-bgp-g-01-0-UI.s1 /CLONE=UI-R-CA0-bgp-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.57972.1 /TIER=ConsEnd /STK=2 /UG=Rn.57972 /UG_TITLE=ESTs BF393053 1380737_at BF415834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415834 /DB_XREF=gi:11403823 /DB_XREF=UI-R-CA1-bkf-e-05-0-UI.s1 /CLONE=UI-R-CA1-bkf-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.62829.1 /TIER=ConsEnd /STK=2 /UG=Rn.62829 /UG_TITLE=ESTs BF415834 engulfment and cell motility 2 Elmo2 362271 NM_001134955 0006909 // phagocytosis // inferred from electronic annotation 0005856 // cytoskeleton // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1380738_at BM392254 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392254 /DB_XREF=gi:18192307 /DB_XREF=UI-R-DO1-ckp-j-21-0-UI.s1 /CLONE=UI-R-DO1-ckp-j-21-0-UI /FEA=EST /CNT=2 /TID=Rn.75833.1 /TIER=ConsEnd /STK=2 /UG=Rn.75833 /UG_TITLE=ESTs BM392254 1380739_at BE111708 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111708 /DB_XREF=gi:8503813 /DB_XREF=UI-R-BJ1-avv-h-04-0-UI.s1 /CLONE=UI-R-BJ1-avv-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.50075.1 /TIER=ConsEnd /STK=2 /UG=Rn.50075 /UG_TITLE=ESTs BE111708 1380740_at BF396506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396506 /DB_XREF=gi:11381480 /DB_XREF=UI-R-BS2-bdy-h-09-0-UI.s1 /CLONE=UI-R-BS2-bdy-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.57463.1 /TIER=ConsEnd /STK=2 /UG=Rn.57463 /UG_TITLE=ESTs BF396506 1380741_at BF412788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412788 /DB_XREF=gi:11400777 /DB_XREF=UI-R-BT1-bnz-d-07-0-UI.s1 /CLONE=UI-R-BT1-bnz-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.21272.1 /TIER=ConsEnd /STK=2 /UG=Rn.21272 /UG_TITLE=ESTs BF412788 1380742_at AI406619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406619 /DB_XREF=gi:4250123 /DB_XREF=EST234906 /CLONE=RBRDN65 /FEA=EST /CNT=2 /TID=Rn.43780.1 /TIER=ConsEnd /STK=2 /UG=Rn.43780 /UG_TITLE=ESTs AI406619 1380743_at BE116508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116508 /DB_XREF=gi:8508613 /DB_XREF=UI-R-BS1-ayj-b-01-0-UI.s1 /CLONE=UI-R-BS1-ayj-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.52688.1 /TIER=ConsEnd /STK=2 /UG=Rn.52688 /UG_TITLE=ESTs BE116508 1380744_at BF390757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390757 /DB_XREF=gi:11375599 /DB_XREF=UI-R-CA1-bcp-a-08-0-UI.s1 /CLONE=UI-R-CA1-bcp-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.62808.1 /TIER=ConsEnd /STK=2 /UG=Rn.62808 /UG_TITLE=ESTs BF390757 1380745_at AA900859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900859 /DB_XREF=gi:4233354 /DB_XREF=UI-R-E0-dk-b-04-0-UI.s1 /CLONE=UI-R-E0-dk-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.21453.1 /TIER=ConsEnd /STK=2 /UG=Rn.21453 /UG_TITLE=ESTs AA900859 1380746_at BM386863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386863 /DB_XREF=gi:18186916 /DB_XREF=UI-R-CN1-cjh-b-10-0-UI.s1 /CLONE=UI-R-CN1-cjh-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.77482.1 /TIER=ConsEnd /STK=2 /UG=Rn.77482 /UG_TITLE=ESTs BM386863 aryl-hydrocarbon receptor repressor Ahrr 498999 NM_001024285 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0033235 // positive regulation of protein sumoylation // inferred from electronic annotation /// 0033235 // positive regulation of protein sumoylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1380747_at BE098757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098757 /DB_XREF=gi:8490626 /DB_XREF=UI-R-BJ1-atd-e-09-0-UI.s1 /CLONE=UI-R-BJ1-atd-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.27630.1 /TIER=ConsEnd /STK=2 /UG=Rn.27630 /UG_TITLE=ESTs BE098757 1380748_at AI639385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639385 /DB_XREF=gi:4700419 /DB_XREF=rx04815s /CLONE=rx04815 /FEA=EST /CNT=2 /TID=Rn.60394.1 /TIER=ConsEnd /STK=2 /UG=Rn.60394 /UG_TITLE=ESTs AI639385 1380749_at BE111746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111746 /DB_XREF=gi:8503851 /DB_XREF=UI-R-BJ1-avx-c-12-0-UI.s1 /CLONE=UI-R-BJ1-avx-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.62094.1 /TIER=ConsEnd /STK=2 /UG=Rn.62094 /UG_TITLE=ESTs BE111746 1380750_at BF398240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398240 /DB_XREF=gi:11383228 /DB_XREF=UI-R-BS2-bfb-b-12-0-UI.s1 /CLONE=UI-R-BS2-bfb-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.64072.1 /TIER=ConsEnd /STK=2 /UG=Rn.64072 /UG_TITLE=ESTs BF398240 1380751_at AI639072 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639072 /DB_XREF=gi:4700106 /DB_XREF=rx01185s /CLONE=rx01185 /FEA=EST /CNT=2 /TID=Rn.49041.1 /TIER=ConsEnd /STK=2 /UG=Rn.49041 /UG_TITLE=ESTs AI639072 1380752_at BF410207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410207 /DB_XREF=gi:11398182 /DB_XREF=UI-R-CA1-bju-g-06-0-UI.s1 /CLONE=UI-R-CA1-bju-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.61620.1 /TIER=ConsEnd /STK=2 /UG=Rn.61620 /UG_TITLE=ESTs BF410207 1380753_at BF398036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398036 /DB_XREF=gi:11383021 /DB_XREF=UI-R-BS2-beg-e-10-0-UI.s1 /CLONE=UI-R-BS2-beg-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.70842.1 /TIER=ConsEnd /STK=2 /UG=Rn.70842 /UG_TITLE=ESTs BF398036 protein associated with topoisomerase II homolog 1 (yeast) Patl1 361736 NM_001108520 0016853 // isomerase activity // inferred from electronic annotation 1380754_at BI290505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290505 /DB_XREF=gi:14949137 /DB_XREF=UI-R-DK0-cgd-a-10-0-UI.s1 /CLONE=UI-R-DK0-cgd-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.70162.1 /TIER=ConsEnd /STK=2 /UG=Rn.70162 /UG_TITLE=ESTs BI290505 zinc finger, FYVE domain containing 20 Zfyve20 312562 NM_001107875 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380755_at AW533897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533897 /DB_XREF=gi:7176358 /DB_XREF=UI-R-C4-alr-a-04-0-UI.s1 /CLONE=UI-R-C4-alr-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.49211.1 /TIER=ConsEnd /STK=2 /UG=Rn.49211 /UG_TITLE=ESTs, Weakly similar to S57968 Ran-binding protein 2 - mouse (M.musculus) AW533897 1380756_at BE102443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102443 /DB_XREF=gi:8494542 /DB_XREF=UI-R-BT1-aqm-f-12-0-UI.s1 /CLONE=UI-R-BT1-aqm-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.50301.1 /TIER=ConsEnd /STK=2 /UG=Rn.50301 /UG_TITLE=ESTs BE102443 1380757_at BF404991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404991 /DB_XREF=gi:11392966 /DB_XREF=UI-R-CA1-bio-b-06-0-UI.s1 /CLONE=UI-R-CA1-bio-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.62794.1 /TIER=ConsEnd /STK=2 /UG=Rn.62794 /UG_TITLE=ESTs BF404991 1380758_at BF412419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412419 /DB_XREF=gi:11400408 /DB_XREF=UI-R-BT1-bna-h-12-0-UI.s1 /CLONE=UI-R-BT1-bna-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.64353.1 /TIER=ConsEnd /STK=2 /UG=Rn.64353 /UG_TITLE=ESTs BF412419 1380759_at BF418105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418105 /DB_XREF=gi:11406094 /DB_XREF=UI-R-CA0-blz-e-06-0-UI.s1 /CLONE=UI-R-CA0-blz-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.63367.1 /TIER=ConsEnd /STK=2 /UG=Rn.63367 /UG_TITLE=ESTs BF418105 1380760_at BF420433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420433 /DB_XREF=gi:11408462 /DB_XREF=UI-R-BJ2-bpw-d-10-0-UI.s1 /CLONE=UI-R-BJ2-bpw-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.63719.1 /TIER=ConsEnd /STK=2 /UG=Rn.63719 /UG_TITLE=ESTs BF420433 ring finger protein 219 Rnf219 361088 NM_001108389 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380761_at BE107402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107402 /DB_XREF=gi:8499507 /DB_XREF=UI-R-BS1-ayt-c-10-0-UI.s1 /CLONE=UI-R-BS1-ayt-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.51173.1 /TIER=ConsEnd /STK=2 /UG=Rn.51173 /UG_TITLE=ESTs BE107402 intraflagellar transport 52 homolog (Chlamydomonas) Ift52 362265 NM_001177685 /// XM_002726291 /// XM_002729251 1380762_at BG378362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378362 /DB_XREF=gi:13302834 /DB_XREF=UI-R-CU0-bvi-b-10-0-UI.s1 /CLONE=UI-R-CU0-bvi-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.66565.1 /TIER=ConsEnd /STK=2 /UG=Rn.66565 /UG_TITLE=ESTs BG378362 1380763_at AI101194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101194 /DB_XREF=gi:3704600 /DB_XREF=EST210483 /CLONE=RBRBG73 /FEA=EST /CNT=2 /TID=Rn.53565.1 /TIER=ConsEnd /STK=2 /UG=Rn.53565 /UG_TITLE=ESTs, Highly similar to A57284 spermatid perinuclear RNA-binding protein Spnr - mouse (M.musculus) AI101194 1380764_at AW433878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433878 /DB_XREF=gi:6965185 /DB_XREF=UI-R-BJ0p-afm-f-09-0-UI.s1 /CLONE=UI-R-BJ0p-afm-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.54275.1 /TIER=ConsEnd /STK=2 /UG=Rn.54275 /UG_TITLE=ESTs, Moderately similar to Y179_HUMAN HYPOTHETICAL PROTEIN KIAA0179 (H.sapiens) AW433878 ribosomal RNA processing 1 homolog B (S. cerevisiae) Rrp1b 309673 XM_001071108 /// XM_228076 0006364 // rRNA processing // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005829 // cytosol // not recorded /// 0030688 // preribosome, small subunit precursor // inferred from electronic annotation 0005515 // protein binding // not recorded 1380765_at BE117715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117715 /DB_XREF=gi:8509820 /DB_XREF=UI-R-BS1-azf-b-01-0-UI.s1 /CLONE=UI-R-BS1-azf-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.14919.1 /TIER=ConsEnd /STK=2 /UG=Rn.14919 /UG_TITLE=ESTs BE117715 1380766_a_at BF389689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389689 /DB_XREF=gi:11374524 /DB_XREF=UI-R-BS2-bdn-f-05-0-UI.s1 /CLONE=UI-R-BS2-bdn-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.25228.1 /TIER=ConsEnd /STK=2 /UG=Rn.25228 /UG_TITLE=ESTs BF389689 1380767_at BF416342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416342 /DB_XREF=gi:11404331 /DB_XREF=UI-R-CA0-bkj-d-06-0-UI.s1 /CLONE=UI-R-CA0-bkj-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.61514.1 /TIER=ConsEnd /STK=2 /UG=Rn.61514 /UG_TITLE=ESTs BF416342 G protein-coupled receptor 180 Gpr180 306165 NM_001006994 0004872 // receptor activity // inferred from electronic annotation 1380768_at BM389322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389322 /DB_XREF=gi:18189375 /DB_XREF=UI-R-DZ0-cko-l-20-0-UI.s1 /CLONE=UI-R-DZ0-cko-l-20-0-UI /FEA=EST /CNT=2 /TID=Rn.52525.1 /TIER=ConsEnd /STK=2 /UG=Rn.52525 /UG_TITLE=ESTs BM389322 1380769_at BF394344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394344 /DB_XREF=gi:11379208 /DB_XREF=UI-R-CA0-bgr-g-08-0-UI.s1 /CLONE=UI-R-CA0-bgr-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.58268.1 /TIER=ConsEnd /STK=2 /UG=Rn.58268 /UG_TITLE=ESTs BF394344 1380770_at BF408818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408818 /DB_XREF=gi:11396793 /DB_XREF=UI-R-BT1-bne-g-05-0-UI.s1 /CLONE=UI-R-BT1-bne-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.61189.1 /TIER=ConsEnd /STK=2 /UG=Rn.61189 /UG_TITLE=ESTs BF408818 1380771_at BM385539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385539 /DB_XREF=gi:18185592 /DB_XREF=UI-R-DM1-ckd-i-01-0-UI.s1 /CLONE=UI-R-DM1-ckd-i-01-0-UI /FEA=EST /CNT=2 /TID=Rn.69298.1 /TIER=ConsEnd /STK=2 /UG=Rn.69298 /UG_TITLE=ESTs BM385539 1380772_at BE105726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105726 /DB_XREF=gi:8497868 /DB_XREF=UI-R-BO1-asi-g-10-0-UI.s1 /CLONE=UI-R-BO1-asi-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.40811.1 /TIER=ConsEnd /STK=2 /UG=Rn.40811 /UG_TITLE=ESTs BE105726 1380773_at BI288767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288767 /DB_XREF=gi:14945662 /DB_XREF=UI-R-DK0-cde-f-11-0-UI.s1 /CLONE=UI-R-DK0-cde-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.48153.1 /TIER=ConsEnd /STK=2 /UG=Rn.48153 /UG_TITLE=ESTs BI288767 1380774_at AI227918 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227918 /DB_XREF=gi:3811805 /DB_XREF=EST224613 /CLONE=RBRCN60 /FEA=EST /CNT=2 /TID=Rn.52729.1 /TIER=ConsEnd /STK=2 /UG=Rn.52729 /UG_TITLE=ESTs AI227918 1380775_at BE110723 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110723 /DB_XREF=gi:8502869 /DB_XREF=UI-R-BJ1-avd-f-12-0-UI.s1 /CLONE=UI-R-BJ1-avd-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.51925.1 /TIER=ConsEnd /STK=2 /UG=Rn.51925 /UG_TITLE=ESTs, Moderately similar to T46451 hypothetical protein DKFZp434I152.1 (H.sapiens) BE110723 kinesin family member 20B Kif20b 309523 NM_001107609 0007018 // microtubule-based movement // inferred from electronic annotation 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005813 // centrosome // not recorded /// 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0050699 // WW domain binding // not recorded 1380776_at BF416420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416420 /DB_XREF=gi:11404409 /DB_XREF=UI-R-CA0-bks-d-07-0-UI.s1 /CLONE=UI-R-CA0-bks-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.63020.1 /TIER=ConsEnd /STK=2 /UG=Rn.63020 /UG_TITLE=ESTs BF416420 1380777_at BF399517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399517 /DB_XREF=gi:11384525 /DB_XREF=UI-R-CA1-bjb-h-12-0-UI.s1 /CLONE=UI-R-CA1-bjb-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.63026.1 /TIER=ConsEnd /STK=2 /UG=Rn.63026 /UG_TITLE=ESTs BF399517 1380778_at BE114005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114005 /DB_XREF=gi:8506110 /DB_XREF=UI-R-BJ1-awi-h-10-0-UI.s1 /CLONE=UI-R-BJ1-awi-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.64477.1 /TIER=ConsEnd /STK=2 /UG=Rn.64477 /UG_TITLE=ESTs BE114005 transmembrane protein 200A Tmem200a 498987 NM_001109135 1380779_at BF395839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395839 /DB_XREF=gi:11380810 /DB_XREF=UI-R-BT1-bkc-h-03-0-UI.s1 /CLONE=UI-R-BT1-bkc-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.58466.1 /TIER=ConsEnd /STK=2 /UG=Rn.58466 /UG_TITLE=ESTs BF395839 1380780_at BI300306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300306 /DB_XREF=gi:14976586 /DB_XREF=UI-R-CV2-cid-d-12-0-UI.s1 /CLONE=UI-R-CV2-cid-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.66971.1 /TIER=ConsEnd /STK=2 /UG=Rn.66971 /UG_TITLE=ESTs BI300306 1380781_at BE106259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106259 /DB_XREF=gi:8498361 /DB_XREF=UI-R-BO1-asl-h-04-0-UI.s1 /CLONE=UI-R-BO1-asl-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.40199.1 /TIER=ConsEnd /STK=2 /UG=Rn.40199 /UG_TITLE=ESTs BE106259 1380782_at AW528654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528654 /DB_XREF=gi:7171068 /DB_XREF=UI-R-BO1-ajr-h-03-0-UI.s1 /CLONE=UI-R-BO1-ajr-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.46960.1 /TIER=ConsEnd /STK=2 /UG=Rn.46960 /UG_TITLE=ESTs AW528654 1380783_at BE113959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113959 /DB_XREF=gi:8506064 /DB_XREF=UI-R-BJ1-awi-d-09-0-UI.s1 /CLONE=UI-R-BJ1-awi-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.49225.1 /TIER=ConsEnd /STK=2 /UG=Rn.49225 /UG_TITLE=ESTs BE113959 solute carrier organic anion transporter family, member 5A1 Slco5a1 312907 NM_001107898 0006810 // transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1380784_at BE115838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115838 /DB_XREF=gi:8507983 /DB_XREF=UI-R-BS1-axv-h-08-0-UI.s1 /CLONE=UI-R-BS1-axv-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.59698.1 /TIER=ConsEnd /STK=2 /UG=Rn.59698 /UG_TITLE=ESTs, Moderately similar to KHL1_MOUSE Kelch-like protein 1 (M.musculus) BE115838 kelch-like 5 (Drosophila) Klhl5 305351 NM_001047093 0005515 // protein binding // inferred from electronic annotation 1380785_at BF405178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405178 /DB_XREF=gi:11393153 /DB_XREF=UI-R-CA1-biq-g-05-0-UI.s1 /CLONE=UI-R-CA1-biq-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.61549.1 /TIER=ConsEnd /STK=2 /UG=Rn.61549 /UG_TITLE=ESTs BF405178 1380786_at BI296185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296185 /DB_XREF=gi:14960373 /DB_XREF=UI-R-DK0-cex-d-01-0-UI.s1 /CLONE=UI-R-DK0-cex-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.76704.1 /TIER=ConsEnd /STK=2 /UG=Rn.76704 /UG_TITLE=ESTs BI296185 1380787_at BE109076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109076 /DB_XREF=gi:8501181 /DB_XREF=UI-R-BS1-azc-f-11-0-UI.s1 /CLONE=UI-R-BS1-azc-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.61072.1 /TIER=ConsEnd /STK=2 /UG=Rn.61072 /UG_TITLE=ESTs BE109076 1380788_at BE112940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112940 /DB_XREF=gi:8505045 /DB_XREF=UI-R-BJ1-awa-f-03-0-UI.s1 /CLONE=UI-R-BJ1-awa-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.15361.1 /TIER=ConsEnd /STK=2 /UG=Rn.15361 /UG_TITLE=ESTs BE112940 1380789_at BF416254 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416254 /DB_XREF=gi:11404243 /DB_XREF=UI-R-CA0-bkr-c-10-0-UI.s1 /CLONE=UI-R-CA0-bkr-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.62966.1 /TIER=ConsEnd /STK=2 /UG=Rn.62966 /UG_TITLE=ESTs BF416254 1380790_at BF416414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416414 /DB_XREF=gi:11404403 /DB_XREF=UI-R-CA0-bks-c-11-0-UI.s1 /CLONE=UI-R-CA0-bks-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.63017.1 /TIER=ConsEnd /STK=2 /UG=Rn.63017 /UG_TITLE=ESTs BF416414 cytospin A Cytsa 361828 NM_001039455 0007049 // cell cycle // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 1380791_at BF405304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405304 /DB_XREF=gi:11393279 /DB_XREF=UI-R-CA1-biw-i-17-0-UI.s1 /CLONE=UI-R-CA1-biw-i-17-0-UI /FEA=EST /CNT=2 /TID=Rn.58110.1 /TIER=ConsEnd /STK=2 /UG=Rn.58110 /UG_TITLE=ESTs BF405304 1380792_at BF406244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406244 /DB_XREF=gi:11394219 /DB_XREF=UI-R-CA1-bjf-k-08-0-UI.s1 /CLONE=UI-R-CA1-bjf-k-08-0-UI /FEA=EST /CNT=2 /TID=Rn.60931.1 /TIER=ConsEnd /STK=2 /UG=Rn.60931 /UG_TITLE=ESTs BF406244 1380793_at BM387766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387766 /DB_XREF=gi:18187819 /DB_XREF=UI-R-CN1-cjk-c-22-0-UI.s1 /CLONE=UI-R-CN1-cjk-c-22-0-UI /FEA=EST /CNT=2 /TID=Rn.82687.1 /TIER=ConsEnd /STK=2 /UG=Rn.82687 /UG_TITLE=ESTs BM387766 Phosphoinositide-3-kinase interacting protein 1 Pik3ip1 305472 NM_001017453 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1380794_at BE106342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106342 /DB_XREF=gi:8498444 /DB_XREF=UI-R-BO1-asm-h-03-0-UI.s1 /CLONE=UI-R-BO1-asm-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.50924.1 /TIER=ConsEnd /STK=2 /UG=Rn.50924 /UG_TITLE=ESTs BE106342 1380795_at BM383849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383849 /DB_XREF=gi:18183902 /DB_XREF=UI-R-DM1-ckc-c-10-0-UI.s1 /CLONE=UI-R-DM1-ckc-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.71580.1 /TIER=ConsEnd /STK=2 /UG=Rn.71580 /UG_TITLE=ESTs BM383849 1380796_at AW521390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521390 /DB_XREF=gi:7163768 /DB_XREF=UI-R-BO0-agl-h-10-0-UI.s1 /CLONE=UI-R-BO0-agl-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.28590.1 /TIER=ConsEnd /STK=2 /UG=Rn.28590 /UG_TITLE=ESTs AW521390 spire homolog 1 (Drosophila) Spire1 307348 NM_001107381 0048193 // Golgi vesicle transport // not recorded 0005794 // Golgi apparatus // not recorded 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1380797_at BE106817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106817 /DB_XREF=gi:8498919 /DB_XREF=UI-R-BT1-ast-e-06-0-UI.s1 /CLONE=UI-R-BT1-ast-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.51052.1 /TIER=ConsEnd /STK=2 /UG=Rn.51052 /UG_TITLE=ESTs BE106817 1380798_at BF395369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395369 /DB_XREF=gi:11380334 /DB_XREF=UI-R-CM0-bjq-g-02-0-UI.s1 /CLONE=UI-R-CM0-bjq-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.58420.1 /TIER=ConsEnd /STK=2 /UG=Rn.58420 /UG_TITLE=ESTs BF395369 Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta Nfkbiz 304005 NM_001107095 0006954 // inflammatory response // not recorded 0005634 // nucleus // not recorded 1380799_at BF388208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388208 /DB_XREF=gi:11373032 /DB_XREF=UI-R-CA1-bca-e-10-0-UI.s1 /CLONE=UI-R-CA1-bca-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.62391.1 /TIER=ConsEnd /STK=2 /UG=Rn.62391 /UG_TITLE=ESTs BF388208 gremlin 2, cysteine knot superfamily, homolog (Xenopus laevis) Grem2 289264 NM_001105974 0030509 // BMP signaling pathway // not recorded 0005576 // extracellular region // not recorded 1380800_at BF413661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413661 /DB_XREF=gi:11401650 /DB_XREF=UI-R-CA0-boh-a-10-0-UI.s1 /CLONE=UI-R-CA0-boh-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.62415.1 /TIER=ConsEnd /STK=2 /UG=Rn.62415 /UG_TITLE=ESTs BF413661 1380801_at BF417999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417999 /DB_XREF=gi:11406028 /DB_XREF=UI-R-CA1-blv-g-02-0-UI.s1 /CLONE=UI-R-CA1-blv-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.63341.1 /TIER=ConsEnd /STK=2 /UG=Rn.63341 /UG_TITLE=ESTs BF417999 1380802_at BM384243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384243 /DB_XREF=gi:18184296 /DB_XREF=UI-R-DZ0-cks-e-13-0-UI.s1 /CLONE=UI-R-DZ0-cks-e-13-0-UI /FEA=EST /CNT=2 /TID=Rn.79409.1 /TIER=ConsEnd /STK=2 /UG=Rn.79409 /UG_TITLE=ESTs, Highly similar to SNX8_HUMAN SORTING NEXIN 8 (H.sapiens) BM384243 sorting nexin 8 Snx8 288504 NM_001105912 0007154 // cell communication // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1380803_at AI176603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176603 /DB_XREF=gi:3727241 /DB_XREF=EST220192 /CLONE=ROVBU42 /FEA=EST /CNT=2 /TID=Rn.81256.1 /TIER=ConsEnd /STK=2 /UG=Rn.81256 /UG_TITLE=ESTs AI176603 1380804_at BM391896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391896 /DB_XREF=gi:18191949 /DB_XREF=UI-R-DO1-cmk-p-18-0-UI.s1 /CLONE=UI-R-DO1-cmk-p-18-0-UI /FEA=EST /CNT=2 /TID=Rn.82656.1 /TIER=ConsEnd /STK=2 /UG=Rn.82656 /UG_TITLE=ESTs BM391896 1380805_at BF397707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397707 /DB_XREF=gi:11382691 /DB_XREF=UI-R-BS2-bed-f-11-0-UI.s1 /CLONE=UI-R-BS2-bed-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.34680.1 /TIER=ConsEnd /STK=2 /UG=Rn.34680 /UG_TITLE=ESTs BF397707 Poliovirus receptor-related 3 Pvrl3 288124 NM_001105883 0002089 // lens morphogenesis in camera-type eye // not recorded /// 0007155 // cell adhesion // not recorded /// 0007156 // homophilic cell adhesion // not recorded /// 0009566 // fertilization // not recorded /// 0016337 // cell-cell adhesion // not recorded /// 0060042 // retina morphogenesis in camera-type eye // not recorded 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // not recorded /// 0005913 // cell-cell adherens junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043296 // apical junction complex // not recorded 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0050839 // cell adhesion molecule binding // not recorded 1380806_at AW526946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526946 /DB_XREF=gi:7169360 /DB_XREF=UI-R-BO1-ajf-g-12-0-UI.s1 /CLONE=UI-R-BO1-ajf-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.46374.1 /TIER=ConsEnd /STK=2 /UG=Rn.46374 /UG_TITLE=ESTs AW526946 1380807_at AW529655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529655 /DB_XREF=gi:7172069 /DB_XREF=UI-R-BT1-akn-g-08-0-UI.s1 /CLONE=UI-R-BT1-akn-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.47273.1 /TIER=ConsEnd /STK=2 /UG=Rn.47273 /UG_TITLE=ESTs AW529655 1380808_at BE112982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112982 /DB_XREF=gi:8505087 /DB_XREF=UI-R-BJ1-awf-a-10-0-UI.s1 /CLONE=UI-R-BJ1-awf-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.75001.1 /TIER=ConsEnd /STK=2 /UG=Rn.75001 /UG_TITLE=ESTs BE112982 toll interacting protein Tollip 361677 NM_001109668 0006954 // inflammatory response // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0016310 // phosphorylation // not recorded /// 0016310 // phosphorylation // inferred from sequence or structural similarity /// 0045087 // innate immune response // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019900 // kinase binding // not recorded /// 0035325 // Toll-like receptor binding // not recorded 1380809_at BM388375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388375 /DB_XREF=gi:18188428 /DB_XREF=UI-R-CN1-cjn-e-07-0-UI.s1 /CLONE=UI-R-CN1-cjn-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.82157.1 /TIER=ConsEnd /STK=2 /UG=Rn.82157 /UG_TITLE=ESTs BM388375 1380810_at BE102637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102637 /DB_XREF=gi:8494736 /DB_XREF=UI-R-BT1-aqs-c-09-0-UI.s1 /CLONE=UI-R-BT1-aqs-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.50358.1 /TIER=ConsEnd /STK=2 /UG=Rn.50358 /UG_TITLE=ESTs BE102637 zinc finger protein 40 Zfp40 690661 NM_001168642 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1380811_at BE105756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105756 /DB_XREF=gi:8497822 /DB_XREF=UI-R-BO1-asi-c-06-0-UI.s1 /CLONE=UI-R-BO1-asi-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.50814.1 /TIER=ConsEnd /STK=2 /UG=Rn.50814 /UG_TITLE=ESTs BE105756 protein tyrosine phosphatase, non-receptor type 4 Ptpn4 246116 NM_001100479 0016311 // dephosphorylation // not recorded 0004726 // non-membrane spanning protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004726 // non-membrane spanning protein tyrosine phosphatase activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1380812_at BI290087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290087 /DB_XREF=gi:14948327 /DB_XREF=UI-R-DK0-cfr-f-10-0-UI.s1 /CLONE=UI-R-DK0-cfr-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.68417.1 /TIER=ConsEnd /STK=2 /UG=Rn.68417 /UG_TITLE=ESTs BI290087 family with sequence similarity 20, member B Fam20b 304885 NM_001107187 0005794 // Golgi apparatus // not recorded 0016773 // phosphotransferase activity, alcohol group as acceptor // not recorded 1380813_at AA891239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891239 /DB_XREF=gi:3018118 /DB_XREF=EST195042 /CLONE=RHEAQ90 /FEA=EST /CNT=2 /TID=Rn.37541.1 /TIER=ConsEnd /STK=2 /UG=Rn.37541 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) AA891239 1380814_at AI599431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599431 /DB_XREF=gi:4608479 /DB_XREF=EST251134 /CLONE=RBRDY14 /FEA=EST /CNT=2 /TID=Rn.40294.1 /TIER=ConsEnd /STK=2 /UG=Rn.40294 /UG_TITLE=ESTs AI599431 1380815_at AW523684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523684 /DB_XREF=gi:7166069 /DB_XREF=UI-R-BO0-aih-a-03-0-UI.s1 /CLONE=UI-R-BO0-aih-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.45710.1 /TIER=ConsEnd /STK=2 /UG=Rn.45710 /UG_TITLE=ESTs AW523684 golgin, RAB6-interacting Gorab 304923 NM_001100563 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1380816_at BF400676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400676 /DB_XREF=gi:11388651 /DB_XREF=UI-R-CA0-bhe-b-08-0-UI.s1 /CLONE=UI-R-CA0-bhe-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.59196.1 /TIER=ConsEnd /STK=2 /UG=Rn.59196 /UG_TITLE=ESTs BF400676 similar to 1700054N08Rik protein RGD1563235 307926 NM_001107441 1380817_at BF394055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394055 /DB_XREF=gi:11378919 /DB_XREF=UI-R-CA0-bgy-d-09-0-UI.s1 /CLONE=UI-R-CA0-bgy-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.62045.1 /TIER=ConsEnd /STK=2 /UG=Rn.62045 /UG_TITLE=ESTs BF394055 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 Prex2 312912 NM_001107899 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1380818_at BE121297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121297 /DB_XREF=gi:8513402 /DB_XREF=UI-R-CA0-baw-c-06-0-UI.s1 /CLONE=UI-R-CA0-baw-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.66511.1 /TIER=ConsEnd /STK=2 /UG=Rn.66511 /UG_TITLE=ESTs BE121297 1380819_at BF391871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391871 /DB_XREF=gi:11376726 /DB_XREF=UI-R-CA1-bcy-e-09-0-UI.s1 /CLONE=UI-R-CA1-bcy-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.75501.1 /TIER=ConsEnd /STK=2 /UG=Rn.75501 /UG_TITLE=ESTs BF391871 1380820_at BI295539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295539 /DB_XREF=gi:14959088 /DB_XREF=UI-R-DK0-cev-e-12-0-UI.s1 /CLONE=UI-R-DK0-cev-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.79717.1 /TIER=ConsEnd /STK=2 /UG=Rn.79717 /UG_TITLE=ESTs BI295539 1380821_a_at AI072678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072678 /DB_XREF=gi:3398872 /DB_XREF=UI-R-C2-nk-d-11-0-UI.s1 /CLONE=UI-R-C2-nk-d-11-0-UI /FEA=EST /CNT=1 /TID=Rn.20224.2 /TIER=ConsEnd /STK=1 /UG=Rn.20224 /UG_TITLE=ESTs AI072678 1380822_at BE097945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097945 /DB_XREF=gi:8488924 /DB_XREF=UI-R-C4-amc-e-08-0-UI.s1 /CLONE=UI-R-C4-amc-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.21416.1 /TIER=ConsEnd /STK=2 /UG=Rn.21416 /UG_TITLE=ESTs BE097945 1380823_at AW535469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535469 /DB_XREF=gi:7177883 /DB_XREF=UI-R-BS0-aof-e-09-0-UI.s1 /CLONE=UI-R-BS0-aof-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.48502.1 /TIER=ConsEnd /STK=2 /UG=Rn.48502 /UG_TITLE=ESTs AW535469 1380824_at AI501458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501458 /DB_XREF=gi:4399309 /DB_XREF=UI-R-C2p-sb-d-06-0-UI.s1 /CLONE=UI-R-C2p-sb-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.52774.1 /TIER=ConsEnd /STK=2 /UG=Rn.52774 /UG_TITLE=ESTs AI501458 Hook homolog 3 (Drosophila) Hook3 306548 NM_001136098 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0007032 // endosome organization // inferred from electronic annotation /// 0007032 // endosome organization // not recorded /// 0007040 // lysosome organization // inferred from electronic annotation /// 0007040 // lysosome organization // not recorded /// 0008333 // endosome to lysosome transport // inferred from electronic annotation /// 0008333 // endosome to lysosome transport // not recorded /// 0031122 // cytoplasmic microtubule organization // inferred from electronic annotation /// 0031122 // cytoplasmic microtubule organization // not recorded /// 0045022 // early endosome to late endosome transport // inferred from electronic annotation /// 0045022 // early endosome to late endosome transport // not recorded /// 0051645 // Golgi localization // inferred from electronic annotation /// 0051645 // Golgi localization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005801 // cis-Golgi network // inferred from electronic annotation /// 0005801 // cis-Golgi network // not recorded /// 0030897 // HOPS complex // inferred from electronic annotation /// 0030897 // HOPS complex // not recorded /// 0070695 // FHF complex // inferred from electronic annotation /// 0070695 // FHF complex // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1380825_at BE102406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102406 /DB_XREF=gi:8494505 /DB_XREF=UI-R-BT1-aqm-c-02-0-UI.s1 /CLONE=UI-R-BT1-aqm-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.57366.1 /TIER=ConsEnd /STK=2 /UG=Rn.57366 /UG_TITLE=ESTs BE102406 1380826_at BF416438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416438 /DB_XREF=gi:11404427 /DB_XREF=UI-R-CA0-bks-f-02-0-UI.s1 /CLONE=UI-R-CA0-bks-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.62350.1 /TIER=ConsEnd /STK=2 /UG=Rn.62350 /UG_TITLE=ESTs BF416438 1380827_at AA819867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819867 /DB_XREF=gi:4228120 /DB_XREF=UI-R-A0-aq-a-01-0-UI.s1 /CLONE=UI-R-A0-aq-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.16683.1 /TIER=ConsEnd /STK=2 /UG=Rn.16683 /UG_TITLE=ESTs AA819867 similar to C1orf25 RGD1307890 304851 NM_001037192 0007610 // behavior // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0030534 // adult behavior // not recorded /// 0030534 // adult behavior // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0004809 // tRNA (guanine-N2-)-methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380828_at AI145413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145413 /DB_XREF=gi:3667212 /DB_XREF=UI-R-BT0-qe-g-04-0-UI.s1 /CLONE=UI-R-BT0-qe-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.28463.1 /TIER=ConsEnd /STK=2 /UG=Rn.28463 /UG_TITLE=ESTs AI145413 gamma-aminobutyric acid (GABA) A receptor, alpha 1 Gabra1 29705 NM_183326 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // traceable author statement /// 0006821 // chloride transport // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // traceable author statement /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004890 // GABA-A receptor activity // traceable author statement /// 0004890 // GABA-A receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005237 // inhibitory extracellular ligand-gated ion channel activity // traceable author statement /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008144 // drug binding // inferred from direct assay /// 0008503 // benzodiazepine receptor activity // traceable author statement 1380829_at BM387795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387795 /DB_XREF=gi:18187848 /DB_XREF=UI-R-CN1-cjk-i-10-0-UI.s1 /CLONE=UI-R-CN1-cjk-i-10-0-UI /FEA=EST /CNT=2 /TID=Rn.79949.1 /TIER=ConsEnd /STK=2 /UG=Rn.79949 /UG_TITLE=ESTs BM387795 1380830_at AI412331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412331 /DB_XREF=gi:4255835 /DB_XREF=EST240629 /CLONE=RBRDU63 /FEA=EST /CNT=2 /TID=Rn.18288.1 /TIER=ConsEnd /STK=2 /UG=Rn.18288 /UG_TITLE=ESTs AI412331 patatin-like phospholipase domain containing 1 Pnpla1 361812 NM_001191841 /// XM_001078563 /// XM_342105 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation 1380831_at AI237035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237035 /DB_XREF=gi:3830541 /DB_XREF=EST233597 /CLONE=ROVDN85 /FEA=EST /CNT=2 /TID=Rn.39250.1 /TIER=ConsEnd /STK=2 /UG=Rn.39250 /UG_TITLE=ESTs AI237035 1380832_at BF403913 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403913 /DB_XREF=gi:11391888 /DB_XREF=UI-R-CA1-bjd-f-17-0-UI.s1 /CLONE=UI-R-CA1-bjd-f-17-0-UI /FEA=EST /CNT=2 /TID=Rn.58342.1 /TIER=ConsEnd /STK=2 /UG=Rn.58342 /UG_TITLE=ESTs, Weakly similar to cubilin (intrinsic factor-cobalamin receptor) (Rattus norvegicus) (R.norvegicus) BF403913 hypothetical protein LOC100360103 LOC100360103 100360103 XM_002728877 1380833_at AI045802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045802 /DB_XREF=gi:3292621 /DB_XREF=UI-R-C0-jq-c-07-0-UI.s2 /CLONE=UI-R-C0-jq-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.18350.1 /TIER=ConsEnd /STK=2 /UG=Rn.18350 /UG_TITLE=ESTs, Highly similar to PHLD MOUSE PHOSPHATIDYLINOSITOL-GLYCAN-SPECIFIC PHOSPHOLIPASE D 1 PRECURSOR (M.musculus) AI045802 glycosylphosphatidylinositol specific phospholipase D1 Gpld1 291132 NM_001100512 0006507 // GPI anchor release // inferred from electronic annotation /// 0006507 // GPI anchor release // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0034364 // high-density lipoprotein particle // inferred from electronic annotation 0004621 // glycosylphosphatidylinositol phospholipase D activity // traceable author statement /// 0004621 // glycosylphosphatidylinositol phospholipase D activity // inferred from electronic annotation /// 0004630 // phospholipase D activity // not recorded /// 0004630 // phospholipase D activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1380834_at BM383031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383031 /DB_XREF=gi:18183084 /DB_XREF=UI-R-DS0-cje-i-17-0-UI.s1 /CLONE=UI-R-DS0-cje-i-17-0-UI /FEA=EST /CNT=2 /TID=Rn.76928.1 /TIER=ConsEnd /STK=2 /UG=Rn.76928 /UG_TITLE=ESTs BM383031 butyrophilin-like 8 Btnl8 406160 NM_212489 0050776 // regulation of immune response // traceable author statement 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1380835_at BF389476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389476 /DB_XREF=gi:11374309 /DB_XREF=UI-R-CJ0-bfc-c-02-0-UI.s1 /CLONE=UI-R-CJ0-bfc-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.56954.1 /TIER=ConsEnd /STK=2 /UG=Rn.56954 /UG_TITLE=ESTs, Weakly similar to Exonuclease (Caenorhabditis elegans) (C.elegans) BF389476 interferon stimulated exonuclease gene 20-like 2 Isg20l2 361977 NM_001007741 0042254 // ribosome biogenesis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1380836_at BG380809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380809 /DB_XREF=gi:13305281 /DB_XREF=UI-R-CT0-bub-f-07-0-UI.s1 /CLONE=UI-R-CT0-bub-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.13193.1 /TIER=ConsEnd /STK=2 /UG=Rn.13193 /UG_TITLE=ESTs BG380809 similar to Putative protein C21orf62 homolog RGD1562726 498060 NM_001109052 1380837_at BE102082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102082 /DB_XREF=gi:8494181 /DB_XREF=UI-R-BT1-aqj-b-07-0-UI.s1 /CLONE=UI-R-BT1-aqj-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.50198.1 /TIER=ConsEnd /STK=2 /UG=Rn.50198 /UG_TITLE=ESTs BE102082 1380838_at BF400692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400692 /DB_XREF=gi:11388667 /DB_XREF=UI-R-CA0-bhe-d-03-0-UI.s1 /CLONE=UI-R-CA0-bhe-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.59621.1 /TIER=ConsEnd /STK=2 /UG=Rn.59621 /UG_TITLE=ESTs BF400692 1380839_at BF401620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401620 /DB_XREF=gi:11389595 /DB_XREF=UI-R-CA0-bgm-g-02-0-UI.s1 /CLONE=UI-R-CA0-bgm-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.59838.1 /TIER=ConsEnd /STK=2 /UG=Rn.59838 /UG_TITLE=ESTs BF401620 1380840_at BF412081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412081 /DB_XREF=gi:11400070 /DB_XREF=UI-R-BT1-bmy-d-06-0-UI.s1 /CLONE=UI-R-BT1-bmy-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.61996.1 /TIER=ConsEnd /STK=2 /UG=Rn.61996 /UG_TITLE=ESTs BF412081 1380841_at BF413704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413704 /DB_XREF=gi:11401693 /DB_XREF=UI-R-CA0-boh-e-11-0-UI.s1 /CLONE=UI-R-CA0-boh-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.62431.1 /TIER=ConsEnd /STK=2 /UG=Rn.62431 /UG_TITLE=ESTs BF413704 1380842_at BF408281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408281 /DB_XREF=gi:11396221 /DB_XREF=UI-R-BJ2-bqr-e-04-0-UI.s1 /CLONE=UI-R-BJ2-bqr-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.61124.1 /TIER=ConsEnd /STK=2 /UG=Rn.61124 /UG_TITLE=ESTs, Weakly similar to GATH_YEAST PROBABLE GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A, MITOCHONDRIAL PRECURSOR (GLU-ADT SUBUNIT A) (S.cerevisiae) BF408281 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 Qrsl1 309911 NM_001014034 0006412 // translation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016884 // carbon-nitrogen ligase activity, with glutamine as amido-N-donor // inferred from electronic annotation 1380843_at BF414449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414449 /DB_XREF=gi:11402433 /DB_XREF=UI-R-CA0-bpa-e-09-0-UI.s1 /CLONE=UI-R-CA0-bpa-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.62542.1 /TIER=ConsEnd /STK=2 /UG=Rn.62542 /UG_TITLE=ESTs BF414449 1380844_at BE098337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098337 /DB_XREF=gi:8490200 /DB_XREF=UI-R-BJ1-asy-e-04-0-UI.s1 /CLONE=UI-R-BJ1-asy-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.32587.1 /TIER=ConsEnd /STK=2 /UG=Rn.32587 /UG_TITLE=ESTs BE098337 1380845_at BI288245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288245 /DB_XREF=gi:14944642 /DB_XREF=UI-R-DK0-ccy-e-12-0-UI.s1 /CLONE=UI-R-DK0-ccy-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.39289.1 /TIER=ConsEnd /STK=2 /UG=Rn.39289 /UG_TITLE=ESTs BI288245 N-acetylated alpha-linked acidic dipeptidase 2 Naalad2 300384 NM_001106802 0006508 // proteolysis // inferred from electronic annotation /// 0042135 // neurotransmitter catabolic process // not recorded 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded 1380846_at BE102106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102106 /DB_XREF=gi:8494205 /DB_XREF=UI-R-BT1-aqj-d-10-0-UI.s1 /CLONE=UI-R-BT1-aqj-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.50203.1 /TIER=ConsEnd /STK=2 /UG=Rn.50203 /UG_TITLE=ESTs BE102106 1380847_at BF409128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409128 /DB_XREF=gi:11397103 /DB_XREF=UI-R-BT1-bkm-c-12-0-UI.s1 /CLONE=UI-R-BT1-bkm-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.61258.1 /TIER=ConsEnd /STK=2 /UG=Rn.61258 /UG_TITLE=ESTs BF409128 zinc finger, matrin type 4 Zmat4 684961 NM_001134747 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380848_at AI102396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102396 /DB_XREF=gi:3704653 /DB_XREF=EST211685 /CLONE=RBRCD05 /FEA=EST /CNT=2 /TID=Rn.25561.1 /TIER=ConsEnd /STK=2 /UG=Rn.25561 /UG_TITLE=ESTs AI102396 similar to DKFZP547E1010 protein LOC361990 361990 NM_001014175 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1380849_at BI274299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274299 /DB_XREF=gi:14885096 /DB_XREF=UI-R-CW0-bwh-c-08-0-UI.s1 /CLONE=UI-R-CW0-bwh-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.69776.1 /TIER=ConsEnd /STK=2 /UG=Rn.69776 /UG_TITLE=ESTs BI274299 1380850_at AI111767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111767 /DB_XREF=gi:3511716 /DB_XREF=UI-R-Y0-me-f-05-0-UI.s1 /CLONE=UI-R-Y0-me-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.26628.1 /TIER=ConsEnd /STK=2 /UG=Rn.26628 /UG_TITLE=ESTs AI111767 1380851_at BF417256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417256 /DB_XREF=gi:11405245 /DB_XREF=UI-R-CN0-blc-h-05-0-UI.s1 /CLONE=UI-R-CN0-blc-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.63204.1 /TIER=ConsEnd /STK=2 /UG=Rn.63204 /UG_TITLE=ESTs BF417256 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3 F Sema3f 315996 NM_001108185 0001755 // neural crest cell migration // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0048843 // negative regulation of axon extension involved in axon guidance // not recorded /// 0050919 // negative chemotaxis // not recorded 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0045499 // chemorepellent activity // not recorded 1380852_at AI112346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112346 /DB_XREF=gi:3512295 /DB_XREF=UI-R-Y0-mg-h-04-0-UI.s1 /CLONE=UI-R-Y0-mg-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.24012.1 /TIER=ConsEnd /STK=2 /UG=Rn.24012 /UG_TITLE=ESTs AI112346 RALY RNA binding protein-like Ralyl 294883 NM_001024978 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1380853_at BE101772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101772 /DB_XREF=gi:8493870 /DB_XREF=UI-R-BT1-aqh-b-11-0-UI.s1 /CLONE=UI-R-BT1-aqh-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.50122.1 /TIER=ConsEnd /STK=2 /UG=Rn.50122 /UG_TITLE=ESTs BE101772 1380854_at BF396482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396482 /DB_XREF=gi:11381456 /DB_XREF=UI-R-BS2-bdy-f-09-0-UI.s1 /CLONE=UI-R-BS2-bdy-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.70676.1 /TIER=ConsEnd /STK=2 /UG=Rn.70676 /UG_TITLE=ESTs, Highly similar to VASCULAR ENDOTHELIAL GROWTH FACTOR B PRECURSOR (M.musculus) BF396482 vascular endothelial growth factor B Vegfb 89811 NM_053549 0001525 // angiogenesis // inferred from expression pattern /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0006493 // protein O-linked glycosylation // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0007507 // heart development // not recorded /// 0010629 // negative regulation of gene expression // not recorded /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0035470 // positive regulation of vascular wound healing // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043117 // positive regulation of vascular permeability // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050930 // induction of positive chemotaxis // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded /// 0060048 // cardiac muscle contraction // not recorded /// 0060754 // positive regulation of mast cell chemotaxis // not recorded /// 0060976 // coronary vasculature development // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // not recorded /// 0005622 // intracellular // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // not recorded 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0042056 // chemoattractant activity // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043183 // vascular endothelial growth factor receptor 1 binding // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1380855_at BM390807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390807 /DB_XREF=gi:18190860 /DB_XREF=UI-R-CN1-cjo-f-16-0-UI.s1 /CLONE=UI-R-CN1-cjo-f-16-0-UI /FEA=EST /CNT=2 /TID=Rn.12903.1 /TIER=ConsEnd /STK=2 /UG=Rn.12903 /UG_TITLE=ESTs BM390807 1380856_at BE120542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120542 /DB_XREF=gi:8512647 /DB_XREF=UI-R-CA0-bat-f-09-0-UI.s1 /CLONE=UI-R-CA0-bat-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.52731.1 /TIER=ConsEnd /STK=2 /UG=Rn.52731 /UG_TITLE=ESTs BE120542 1380857_at AA859000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859000 /DB_XREF=gi:4229270 /DB_XREF=UI-R-A0-bi-c-07-0-UI.s1 /CLONE=UI-R-A0-bi-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.16940.1 /TIER=ConsEnd /STK=2 /UG=Rn.16940 /UG_TITLE=ESTs AA859000 Phosphodiesterase 12 Pde12 306231 NM_001013998 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0016787 // hydrolase activity // inferred from electronic annotation 1380858_at BE120316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120316 /DB_XREF=gi:8512421 /DB_XREF=UI-R-CA0-baq-a-08-0-UI.s1 /CLONE=UI-R-CA0-baq-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.57166.1 /TIER=ConsEnd /STK=2 /UG=Rn.57166 /UG_TITLE=ESTs BE120316 1380859_at AA891931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891931 /DB_XREF=gi:3018810 /DB_XREF=EST195734 /CLONE=RKIAI73 /FEA=EST /CNT=2 /TID=Rn.11518.1 /TIER=ConsEnd /STK=2 /UG=Rn.11518 /UG_TITLE=ESTs AA891931 1380860_at AA819536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819536 /DB_XREF=gi:4228672 /DB_XREF=UI-R-A0-bf-f-07-0-UI.s1 /CLONE=UI-R-A0-bf-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.16781.1 /TIER=ConsEnd /STK=2 /UG=Rn.16781 /UG_TITLE=ESTs AA819536 1380861_at AI145433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145433 /DB_XREF=gi:3667232 /DB_XREF=UI-R-BT0-pv-b-07-0-UI.s1 /CLONE=UI-R-BT0-pv-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.28473.1 /TIER=ConsEnd /STK=2 /UG=Rn.28473 /UG_TITLE=ESTs AI145433 1380862_at BF386273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386273 /DB_XREF=gi:11371097 /DB_XREF=UI-R-CA1-bbc-f-04-0-UI.s1 /CLONE=UI-R-CA1-bbc-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.47139.1 /TIER=ConsEnd /STK=2 /UG=Rn.47139 /UG_TITLE=ESTs BF386273 1380863_at BF399490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399490 /DB_XREF=gi:11384498 /DB_XREF=UI-R-CA1-bjb-b-22-0-UI.s1 /CLONE=UI-R-CA1-bjb-b-22-0-UI /FEA=EST /CNT=2 /TID=Rn.57695.1 /TIER=ConsEnd /STK=2 /UG=Rn.57695 /UG_TITLE=ESTs BF399490 1380864_at BE110065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110065 /DB_XREF=gi:8502170 /DB_XREF=UI-R-CA0-axj-f-04-0-UI.s1 /CLONE=UI-R-CA0-axj-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.61008.1 /TIER=ConsEnd /STK=2 /UG=Rn.61008 /UG_TITLE=ESTs BE110065 1380865_at BM385284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385284 /DB_XREF=gi:18185337 /DB_XREF=UI-R-EB1-clf-l-14-0-UI.s1 /CLONE=UI-R-EB1-clf-l-14-0-UI /FEA=EST /CNT=2 /TID=Rn.15299.1 /TIER=ConsEnd /STK=2 /UG=Rn.15299 /UG_TITLE=ESTs BM385284 1380866_at AA817746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817746 /DB_XREF=gi:4198275 /DB_XREF=UI-R-A0-aa-h-12-0-UI.s1 /CLONE=UI-R-A0-aa-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.16387.1 /TIER=ConsEnd /STK=2 /UG=Rn.16387 /UG_TITLE=ESTs AA817746 similar to adenylate kinase 5 isoform 1 LOC365985 365985 NM_001108951 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0046034 // ATP metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004017 // adenylate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from electronic annotation /// 0019205 // nucleobase, nucleoside, nucleotide kinase activity // inferred from electronic annotation 1380867_a_at BM383086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383086 /DB_XREF=gi:18183139 /DB_XREF=UI-R-DS0-cje-j-07-0-UI.s1 /CLONE=UI-R-DS0-cje-j-07-0-UI /FEA=EST /CNT=2 /TID=Rn.17045.1 /TIER=ConsEnd /STK=2 /UG=Rn.17045 /UG_TITLE=ESTs BM383086 pleckstrin homology domain containing, family M (with RUN domain) member 1 Plekhm1 303584 NM_001009677 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0046872 // metal ion binding // inferred from electronic annotation 1380868_at BF418138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418138 /DB_XREF=gi:11406127 /DB_XREF=UI-R-CA0-blz-h-10-0-UI.s1 /CLONE=UI-R-CA0-blz-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.24525.1 /TIER=ConsEnd /STK=2 /UG=Rn.24525 /UG_TITLE=ESTs BF418138 1380869_at AA893836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893836 /DB_XREF=gi:4132338 /DB_XREF=EST197639 /CLONE=RPLAM26 /FEA=EST /CNT=2 /TID=Rn.43078.1 /TIER=ConsEnd /STK=2 /UG=Rn.43078 /UG_TITLE=ESTs AA893836 1380870_at AW527523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527523 /DB_XREF=gi:7169937 /DB_XREF=UI-R-BO1-ajv-c-06-0-UI.s1 /CLONE=UI-R-BO1-ajv-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.46562.1 /TIER=ConsEnd /STK=2 /UG=Rn.46562 /UG_TITLE=ESTs AW527523 1380871_at AW528400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528400 /DB_XREF=gi:7170814 /DB_XREF=UI-R-BO1-ajl-a-04-0-UI.s1 /CLONE=UI-R-BO1-ajl-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.46864.1 /TIER=ConsEnd /STK=2 /UG=Rn.46864 /UG_TITLE=ESTs AW528400 1380872_at BF396681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396681 /DB_XREF=gi:11381661 /DB_XREF=UI-R-BS2-bea-h-07-0-UI.s1 /CLONE=UI-R-BS2-bea-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.58655.1 /TIER=ConsEnd /STK=2 /UG=Rn.58655 /UG_TITLE=ESTs BF396681 1380873_at BF410197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410197 /DB_XREF=gi:11398172 /DB_XREF=UI-R-CA1-bju-f-06-0-UI.s1 /CLONE=UI-R-CA1-bju-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.61615.1 /TIER=ConsEnd /STK=2 /UG=Rn.61615 /UG_TITLE=ESTs, Highly similar to A54602 microtubule-associated serinethreonine protein kinase MAST205 - mouse (M.musculus) BF410197 microtubule associated serine/threonine kinase 2 Mast2 313819 NM_001108005 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0045075 // regulation of interleukin-12 biosynthetic process // not recorded /// 0048515 // spermatid differentiation // not recorded 0015630 // microtubule cytoskeleton // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008017 // microtubule binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019902 // phosphatase binding // not recorded 1380874_at AW521752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521752 /DB_XREF=gi:7164137 /DB_XREF=UI-R-BO0-agr-d-04-0-UI.s1 /CLONE=UI-R-BO0-agr-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.45246.1 /TIER=ConsEnd /STK=2 /UG=Rn.45246 /UG_TITLE=ESTs AW521752 Dullard homolog (Xenopus laevis) Dullard 287447 NM_001100494 /// XM_001079431 /// XM_001080620 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0006998 // nuclear envelope organization // not recorded /// 0006998 // nuclear envelope organization // inferred from sequence or structural similarity /// 0006998 // nuclear envelope organization // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005635 // nuclear envelope // inferred from sequence or structural similarity /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // not recorded /// 0004722 // protein serine/threonine phosphatase activity // inferred from sequence or structural similarity /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1380875_at BE106717 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106717 /DB_XREF=gi:8498819 /DB_XREF=UI-R-BO1-asr-d-03-0-UI.s1 /CLONE=UI-R-BO1-asr-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.47118.1 /TIER=ConsEnd /STK=2 /UG=Rn.47118 /UG_TITLE=ESTs BE106717 1380876_at AI010054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010054 /DB_XREF=gi:3223886 /DB_XREF=EST204505 /CLONE=RLUBT03 /FEA=EST /CNT=2 /TID=Rn.52552.1 /TIER=ConsEnd /STK=2 /UG=Rn.52552 /UG_TITLE=ESTs AI010054 1380877_at BE111570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111570 /DB_XREF=gi:8503675 /DB_XREF=UI-R-BJ1-avc-c-12-0-UI.s1 /CLONE=UI-R-BJ1-avc-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.56805.1 /TIER=ConsEnd /STK=2 /UG=Rn.56805 /UG_TITLE=ESTs BE111570 1380878_at BF404073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404073 /DB_XREF=gi:11392048 /DB_XREF=UI-R-CA1-biw-f-01-0-UI.s1 /CLONE=UI-R-CA1-biw-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.58073.1 /TIER=ConsEnd /STK=2 /UG=Rn.58073 /UG_TITLE=ESTs BF404073 1380879_at BF396452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396452 /DB_XREF=gi:11381424 /DB_XREF=UI-R-BS2-bdy-c-12-0-UI.s1 /CLONE=UI-R-BS2-bdy-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.58079.1 /TIER=ConsEnd /STK=2 /UG=Rn.58079 /UG_TITLE=ESTs BF396452 1380880_at AA900583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900583 /DB_XREF=gi:4233075 /DB_XREF=UI-R-E0-dn-b-11-0-UI.s1 /CLONE=UI-R-E0-dn-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.15085.1 /TIER=ConsEnd /STK=2 /UG=Rn.15085 /UG_TITLE=ESTs AA900583 1380881_at AI112304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112304 /DB_XREF=gi:3512253 /DB_XREF=UI-R-Y0-mg-a-03-0-UI.s1 /CLONE=UI-R-Y0-mg-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.26745.1 /TIER=ConsEnd /STK=2 /UG=Rn.26745 /UG_TITLE=ESTs AI112304 1380882_at BF390857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390857 /DB_XREF=gi:11375704 /DB_XREF=UI-R-CA1-bci-c-07-0-UI.s1 /CLONE=UI-R-CA1-bci-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.62987.1 /TIER=ConsEnd /STK=2 /UG=Rn.62987 /UG_TITLE=ESTs BF390857 1380883_at BF386294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386294 /DB_XREF=gi:11371118 /DB_XREF=UI-R-CA1-bbc-h-02-0-UI.s1 /CLONE=UI-R-CA1-bbc-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.14588.1 /TIER=ConsEnd /STK=2 /UG=Rn.14588 /UG_TITLE=ESTs BF386294 1380884_at AW524553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524553 /DB_XREF=gi:7166938 /DB_XREF=UI-R-BO0-ahz-g-05-0-UI.s1 /CLONE=UI-R-BO0-ahz-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.34444.1 /TIER=ConsEnd /STK=2 /UG=Rn.34444 /UG_TITLE=ESTs AW524553 1380885_at BE107574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107574 /DB_XREF=gi:8499679 /DB_XREF=UI-R-CA0-awv-c-09-0-UI.s1 /CLONE=UI-R-CA0-awv-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.49601.1 /TIER=ConsEnd /STK=2 /UG=Rn.49601 /UG_TITLE=ESTs BE107574 1380886_at AI145907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145907 /DB_XREF=gi:3667706 /DB_XREF=UI-R-BT0-qg-g-04-0-UI.s1 /CLONE=UI-R-BT0-qg-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.58553.1 /TIER=ConsEnd /STK=2 /UG=Rn.58553 /UG_TITLE=ESTs AI145907 1380887_at BF389417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389417 /DB_XREF=gi:11374247 /DB_XREF=UI-R-BS2-bdj-f-01-0-UI.s1 /CLONE=UI-R-BS2-bdj-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.62776.1 /TIER=ConsEnd /STK=2 /UG=Rn.62776 /UG_TITLE=ESTs BF389417 1380888_at AI176481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176481 /DB_XREF=gi:3727119 /DB_XREF=EST220066 /CLONE=ROVBS36 /FEA=EST /CNT=2 /TID=Rn.79238.1 /TIER=ConsEnd /STK=2 /UG=Rn.79238 /UG_TITLE=ESTs, Highly similar to HISTONE H3 (M.musculus) AI176481 similar to CG31613-PA LOC684841 684841 XM_001072155 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1380889_at AI009209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009209 /DB_XREF=gi:3223041 /DB_XREF=EST203660 /CLONE=REMBK96 /FEA=EST /CNT=2 /TID=Rn.23376.1 /TIER=ConsEnd /STK=2 /UG=Rn.23376 /UG_TITLE=ESTs AI009209 1380890_at BE118102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118102 /DB_XREF=gi:8510207 /DB_XREF=UI-R-BS1-azn-f-10-0-UI.s1 /CLONE=UI-R-BS1-azn-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.45821.1 /TIER=ConsEnd /STK=2 /UG=Rn.45821 /UG_TITLE=ESTs BE118102 centrosome and spindle pole associated protein 1 Cspp1 362472 NM_001191864 /// XM_001060285 /// XM_342793 1380891_at BF391693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391693 /DB_XREF=gi:11376547 /DB_XREF=UI-R-CA1-bct-d-04-0-UI.s1 /CLONE=UI-R-CA1-bct-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.46373.1 /TIER=ConsEnd /STK=2 /UG=Rn.46373 /UG_TITLE=ESTs BF391693 1380892_at BF412370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412370 /DB_XREF=gi:11400359 /DB_XREF=UI-R-BT1-bna-b-10-0-UI.s1 /CLONE=UI-R-BT1-bna-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.49582.1 /TIER=ConsEnd /STK=2 /UG=Rn.49582 /UG_TITLE=ESTs BF412370 1380893_at BF416306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416306 /DB_XREF=gi:11404295 /DB_XREF=UI-R-CA0-bkr-h-06-0-UI.s1 /CLONE=UI-R-CA0-bkr-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.51079.1 /TIER=ConsEnd /STK=2 /UG=Rn.51079 /UG_TITLE=ESTs, Moderately similar to CYP4_HUMAN 40 KDA PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (H.sapiens) BF416306 peptidylprolyl isomerase D (cyclophilin D) Ppid 361967 NM_001004279 0006457 // protein folding // traceable author statement /// 0006457 // protein folding // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0006916 // anti-apoptosis // traceable author statement /// 0006979 // response to oxidative stress // inferred from mutant phenotype /// 0051881 // regulation of mitochondrial membrane potential // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from mutant phenotype 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from direct assay /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // traceable author statement /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from electronic annotation 1380894_at AA818607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818607 /DB_XREF=gi:4228398 /DB_XREF=UI-R-A0-bc-h-05-0-UI.s1 /CLONE=UI-R-A0-bc-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.16731.1 /TIER=ConsEnd /STK=2 /UG=Rn.16731 /UG_TITLE=ESTs, Weakly similar to paired-Ig-like receptor A10 (Mus musculus) (M.musculus) AA818607 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5 Lilra5 691533 NM_001076793 1380895_at BE103215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103215 /DB_XREF=gi:8495279 /DB_XREF=UI-R-BT1-aqx-e-05-0-UI.s1 /CLONE=UI-R-BT1-aqx-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.48891.1 /TIER=ConsEnd /STK=2 /UG=Rn.48891 /UG_TITLE=ESTs BE103215 1380896_at BF399974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399974 /DB_XREF=gi:11384985 /DB_XREF=UI-R-CA1-bia-b-10-0-UI.s1 /CLONE=UI-R-CA1-bia-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.49605.1 /TIER=ConsEnd /STK=2 /UG=Rn.49605 /UG_TITLE=ESTs BF399974 1380897_at BE105590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105590 /DB_XREF=gi:8497692 /DB_XREF=UI-R-BX0-ash-f-07-0-UI.s1 /CLONE=UI-R-BX0-ash-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.50799.1 /TIER=ConsEnd /STK=2 /UG=Rn.50799 /UG_TITLE=ESTs BE105590 1380898_at BF418099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418099 /DB_XREF=gi:11406088 /DB_XREF=UI-R-CA0-blz-d-12-0-UI.s1 /CLONE=UI-R-CA0-blz-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.63365.1 /TIER=ConsEnd /STK=2 /UG=Rn.63365 /UG_TITLE=ESTs BF418099 1380899_at AW527286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527286 /DB_XREF=gi:7169700 /DB_XREF=UI-R-BO1-ajs-e-11-0-UI.s1 /CLONE=UI-R-BO1-ajs-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.64181.1 /TIER=ConsEnd /STK=2 /UG=Rn.64181 /UG_TITLE=ESTs AW527286 1380900_at BE120504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120504 /DB_XREF=gi:8512609 /DB_XREF=UI-R-CA0-bat-c-03-0-UI.s1 /CLONE=UI-R-CA0-bat-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.26751.1 /TIER=ConsEnd /STK=2 /UG=Rn.26751 /UG_TITLE=ESTs BE120504 1380901_at AW527298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527298 /DB_XREF=gi:7169712 /DB_XREF=UI-R-BO1-ajs-f-12-0-UI.s1 /CLONE=UI-R-BO1-ajs-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.42973.1 /TIER=ConsEnd /STK=2 /UG=Rn.42973 /UG_TITLE=ESTs AW527298 Synaptotagmin XVI Syt16 299142 XM_001077814 /// XM_234300 0005515 // protein binding // not recorded /// 0005543 // phospholipid binding // not recorded /// 0005544 // calcium-dependent phospholipid binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1380902_at BE106303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106303 /DB_XREF=gi:8498405 /DB_XREF=UI-R-BO1-asm-d-04-0-UI.s1 /CLONE=UI-R-BO1-asm-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.50914.1 /TIER=ConsEnd /STK=2 /UG=Rn.50914 /UG_TITLE=ESTs BE106303 1380903_at BE106376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106376 /DB_XREF=gi:8498478 /DB_XREF=UI-R-BT1-asv-c-05-0-UI.s1 /CLONE=UI-R-BT1-asv-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.50935.1 /TIER=ConsEnd /STK=2 /UG=Rn.50935 /UG_TITLE=ESTs BE106376 Similar to zinc finger protein 84 (HPF2) LOC691170 691170 XM_001077082 /// XM_002726875 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1380904_at BI300461 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300461 /DB_XREF=gi:14976741 /DB_XREF=UI-R-CV2-cif-c-04-0-UI.s1 /CLONE=UI-R-CV2-cif-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.66251.1 /TIER=ConsEnd /STK=2 /UG=Rn.66251 /UG_TITLE=ESTs BI300461 1380905_at AA893260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893260 /DB_XREF=gi:4132271 /DB_XREF=EST197063 /CLONE=RKIBE21 /FEA=EST /CNT=2 /TID=Rn.40554.1 /TIER=ConsEnd /STK=2 /UG=Rn.40554 /UG_TITLE=ESTs AA893260 1380906_at BF409319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409319 /DB_XREF=gi:11397294 /DB_XREF=UI-R-CA1-ble-f-07-0-UI.s1 /CLONE=UI-R-CA1-ble-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.61073.1 /TIER=ConsEnd /STK=2 /UG=Rn.61073 /UG_TITLE=ESTs BF409319 1380907_at BE109785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109785 /DB_XREF=gi:8501890 /DB_XREF=UI-R-BJ1-aul-c-02-0-UI.s1 /CLONE=UI-R-BJ1-aul-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.61733.1 /TIER=ConsEnd /STK=2 /UG=Rn.61733 /UG_TITLE=ESTs BE109785 1380908_at AA924563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924563 /DB_XREF=gi:4235754 /DB_XREF=UI-R-A1-dz-g-10-0-UI.s1 /CLONE=UI-R-A1-dz-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.7691.1 /TIER=ConsEnd /STK=2 /UG=Rn.7691 /UG_TITLE=ESTs AA924563 1380909_at BM385894 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385894 /DB_XREF=gi:18185947 /DB_XREF=UI-R-DM1-cke-l-08-0-UI.s1 /CLONE=UI-R-DM1-cke-l-08-0-UI /FEA=EST /CNT=2 /TID=Rn.81275.1 /TIER=ConsEnd /STK=2 /UG=Rn.81275 /UG_TITLE=ESTs BM385894 solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24 Slc25a24 310791 NM_001127544 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1380910_at BF405388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405388 /DB_XREF=gi:11393363 /DB_XREF=UI-R-CA1-bit-f-08-0-UI.s1 /CLONE=UI-R-CA1-bit-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.59458.1 /TIER=ConsEnd /STK=2 /UG=Rn.59458 /UG_TITLE=ESTs BF405388 1380911_at BF419206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419206 /DB_XREF=gi:11407158 /DB_XREF=UI-R-BJ2-bqo-d-07-0-UI.s1 /CLONE=UI-R-BJ2-bqo-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.63479.1 /TIER=ConsEnd /STK=2 /UG=Rn.63479 /UG_TITLE=ESTs BF419206 LOC360590 RGD1311564 360590 NM_001108286 1380912_at BE108142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108142 /DB_XREF=gi:8500247 /DB_XREF=UI-R-CA0-axa-h-09-0-UI.s1 /CLONE=UI-R-CA0-axa-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.66663.1 /TIER=ConsEnd /STK=2 /UG=Rn.66663 /UG_TITLE=ESTs BE108142 1380913_at BG374053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374053 /DB_XREF=gi:13298525 /DB_XREF=UI-R-CV1-bsl-h-07-0-UI.s1 /CLONE=UI-R-CV1-bsl-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.73026.1 /TIER=ConsEnd /STK=2 /UG=Rn.73026 /UG_TITLE=ESTs, Moderately similar to S21348 probable pol polyprotein-related protein 4 - rat (R.norvegicus) BG374053 1380914_at AI175405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175405 /DB_XREF=gi:3726043 /DB_XREF=EST218948 /CLONE=RMUCN10 /FEA=EST /CNT=2 /TID=Rn.28893.1 /TIER=ConsEnd /STK=2 /UG=Rn.28893 /UG_TITLE=ESTs AI175405 1380915_at AI547937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547937 /DB_XREF=gi:4465425 /DB_XREF=UI-R-C3-tb-c-09-0-UI.s1 /CLONE=UI-R-C3-tb-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.44969.1 /TIER=ConsEnd /STK=2 /UG=Rn.44969 /UG_TITLE=ESTs AI547937 1380916_at BE106557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106557 /DB_XREF=gi:8498659 /DB_XREF=UI-R-BO1-asp-d-03-0-UI.s1 /CLONE=UI-R-BO1-asp-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.50993.1 /TIER=ConsEnd /STK=2 /UG=Rn.50993 /UG_TITLE=ESTs, Highly similar to SYNTAXIN BINDING PROTEIN 1 (R.norvegicus) BE106557 1380917_at BE109049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109049 /DB_XREF=gi:8501154 /DB_XREF=UI-R-BS1-azc-d-05-0-UI.s1 /CLONE=UI-R-BS1-azc-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.51660.1 /TIER=ConsEnd /STK=2 /UG=Rn.51660 /UG_TITLE=ESTs BE109049 neurofascin Nfasc 116690 NM_001160313 /// NM_001160314 /// NM_001160315 /// NM_053909 0007155 // cell adhesion // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007422 // peripheral nervous system development // inferred from expression pattern /// 0042552 // myelination // inferred from expression pattern /// 0050808 // synapse organization // inferred from electronic annotation /// 0050808 // synapse organization // not recorded 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0033268 // node of Ranvier // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1380918_at BM383889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383889 /DB_XREF=gi:18183942 /DB_XREF=UI-R-DM1-ckc-k-04-0-UI.s1 /CLONE=UI-R-DM1-ckc-k-04-0-UI /FEA=EST /CNT=2 /TID=Rn.52933.1 /TIER=ConsEnd /STK=2 /UG=Rn.52933 /UG_TITLE=ESTs BM383889 1380919_at BI291212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291212 /DB_XREF=gi:14950540 /DB_XREF=UI-R-CV2-cgm-c-05-0-UI.s1 /CLONE=UI-R-CV2-cgm-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.66225.1 /TIER=ConsEnd /STK=2 /UG=Rn.66225 /UG_TITLE=ESTs BI291212 1380920_at BF386652 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386652 /DB_XREF=gi:11371476 /DB_XREF=UI-R-CA1-bbf-h-08-0-UI.s1 /CLONE=UI-R-CA1-bbf-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.69884.1 /TIER=ConsEnd /STK=2 /UG=Rn.69884 /UG_TITLE=ESTs BF386652 1380921_at AI548341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548341 /DB_XREF=gi:4465829 /DB_XREF=UI-R-C3-td-b-04-0-UI.s1 /CLONE=UI-R-C3-td-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.27139.1 /TIER=ConsEnd /STK=2 /UG=Rn.27139 /UG_TITLE=ESTs AI548341 Similar to K11B4.2 LOC688966 688966 NM_001145726 1380922_at AI412415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412415 /DB_XREF=gi:4255919 /DB_XREF=EST240714 /CLONE=RBRDO66 /FEA=EST /CNT=2 /TID=Rn.43830.1 /TIER=ConsEnd /STK=2 /UG=Rn.43830 /UG_TITLE=ESTs, Moderately similar to Z261_HUMAN ZINC FINGER PROTEIN 261 (DXS6673E PROTEIN) (H.sapiens) AI412415 Zinc finger, MYM-type 3 Zmym3 317260 NM_001040155 0008270 // zinc ion binding // inferred from electronic annotation 1380923_at AI236047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236047 /DB_XREF=gi:3829553 /DB_XREF=EST232609 /CLONE=ROVDA65 /FEA=EST /CNT=2 /TID=Rn.57125.1 /TIER=ConsEnd /STK=2 /UG=Rn.57125 /UG_TITLE=ESTs AI236047 1380924_at BF395816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395816 /DB_XREF=gi:11380787 /DB_XREF=UI-R-BT1-bkc-f-03-0-UI.s1 /CLONE=UI-R-BT1-bkc-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.58458.1 /TIER=ConsEnd /STK=2 /UG=Rn.58458 /UG_TITLE=ESTs BF395816 1380925_at BF420093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420093 /DB_XREF=gi:11408082 /DB_XREF=UI-R-BJ2-bpm-h-01-0-UI.s1 /CLONE=UI-R-BJ2-bpm-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.63681.1 /TIER=ConsEnd /STK=2 /UG=Rn.63681 /UG_TITLE=ESTs BF420093 1380926_at AA957632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957632 /DB_XREF=gi:4277522 /DB_XREF=UI-R-E1-gf-a-05-0-UI.s1 /CLONE=UI-R-E1-gf-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.32930.1 /TIER=ConsEnd /STK=2 /UG=Rn.32930 /UG_TITLE=ESTs AA957632 1380927_at AW529115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529115 /DB_XREF=gi:7171529 /DB_XREF=UI-R-BO1-ajp-c-02-0-UI.s1 /CLONE=UI-R-BO1-ajp-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.47091.1 /TIER=ConsEnd /STK=2 /UG=Rn.47091 /UG_TITLE=ESTs AW529115 1380928_at BF390223 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390223 /DB_XREF=gi:11375031 /DB_XREF=UI-R-CA1-bcl-e-06-0-UI.s1 /CLONE=UI-R-CA1-bcl-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.57979.1 /TIER=ConsEnd /STK=2 /UG=Rn.57979 /UG_TITLE=ESTs BF390223 1380929_at BF393940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393940 /DB_XREF=gi:11378804 /DB_XREF=UI-R-CA0-bgw-h-06-0-UI.s1 /CLONE=UI-R-CA0-bgw-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.58175.1 /TIER=ConsEnd /STK=2 /UG=Rn.58175 /UG_TITLE=ESTs BF393940 similar to hypothetical protein FLJ34512 RGD1560244 302996 XM_002724593 /// XM_002727730 1380930_at BM389240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389240 /DB_XREF=gi:18189293 /DB_XREF=UI-R-DZ0-cko-k-22-0-UI.s1 /CLONE=UI-R-DZ0-cko-k-22-0-UI /FEA=EST /CNT=2 /TID=Rn.27021.1 /TIER=ConsEnd /STK=2 /UG=Rn.27021 /UG_TITLE=ESTs, Weakly similar to T13960 beige protein homolog - rat (R.norvegicus) BM389240 similar to chromosome 10 open reading frame 64 RGD1564142 498582 XR_085638 /// XR_086037 0005488 // binding // inferred from electronic annotation 1380931_at BF393808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393808 /DB_XREF=gi:11378671 /DB_XREF=UI-R-CA0-bgv-b-09-0-UI.s1 /CLONE=UI-R-CA0-bgv-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.28522.1 /TIER=ConsEnd /STK=2 /UG=Rn.28522 /UG_TITLE=ESTs BF393808 1380932_at BG373573 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373573 /DB_XREF=gi:13270110 /DB_XREF=UI-R-CV1-bse-d-06-0-UI.s1 /CLONE=UI-R-CV1-bse-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.48919.1 /TIER=ConsEnd /STK=2 /UG=Rn.48919 /UG_TITLE=ESTs BG373573 1380933_at AI639190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639190 /DB_XREF=gi:4700224 /DB_XREF=rx04161s /CLONE=rx04161 /FEA=EST /CNT=2 /TID=Rn.58772.1 /TIER=ConsEnd /STK=2 /UG=Rn.58772 /UG_TITLE=ESTs AI639190 1380934_at BM387975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387975 /DB_XREF=gi:18188028 /DB_XREF=UI-R-CN1-cjk-n-16-0-UI.s1 /CLONE=UI-R-CN1-cjk-n-16-0-UI /FEA=EST /CNT=2 /TID=Rn.76073.1 /TIER=ConsEnd /STK=2 /UG=Rn.76073 /UG_TITLE=ESTs BM387975 1380935_at AI179379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179379 /DB_XREF=gi:4135149 /DB_XREF=EST223077 /CLONE=RSPCG40 /FEA=EST /CNT=2 /TID=Rn.24212.1 /TIER=ConsEnd /STK=2 /UG=Rn.24212 /UG_TITLE=ESTs AI179379 1380936_at AI229699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229699 /DB_XREF=gi:3813586 /DB_XREF=EST226394 /CLONE=REMCK74 /FEA=EST /CNT=2 /TID=Rn.24464.1 /TIER=ConsEnd /STK=2 /UG=Rn.24464 /UG_TITLE=ESTs AI229699 thymus, brain and testes associated Tbata 499429 XM_001055117 /// XM_574753 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded 1380937_at BE106331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106331 /DB_XREF=gi:8498433 /DB_XREF=UI-R-BO1-asm-g-01-0-UI.s1 /CLONE=UI-R-BO1-asm-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.49492.1 /TIER=ConsEnd /STK=2 /UG=Rn.49492 /UG_TITLE=ESTs BE106331 1380938_at BE106206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106206 /DB_XREF=gi:8498308 /DB_XREF=UI-R-BO1-asl-c-03-0-UI.s1 /CLONE=UI-R-BO1-asl-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.50889.1 /TIER=ConsEnd /STK=2 /UG=Rn.50889 /UG_TITLE=ESTs BE106206 dual serine/threonine and tyrosine protein kinase Dstyk 304791 NM_199463 0006468 // protein phosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1380939_at BE118701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118701 /DB_XREF=gi:8510806 /DB_XREF=UI-R-BS1-azr-g-03-0-UI.s1 /CLONE=UI-R-BS1-azr-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.58442.1 /TIER=ConsEnd /STK=2 /UG=Rn.58442 /UG_TITLE=ESTs BE118701 1380940_at BF402603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402603 /DB_XREF=gi:11390578 /DB_XREF=UI-R-CA0-bhm-d-08-0-UI.s1 /CLONE=UI-R-CA0-bhm-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.60083.1 /TIER=ConsEnd /STK=2 /UG=Rn.60083 /UG_TITLE=ESTs BF402603 1380941_at AI501031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501031 /DB_XREF=gi:4398882 /DB_XREF=UI-R-C2p-rs-f-03-0-UI.s1 /CLONE=UI-R-C2p-rs-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.21201.1 /TIER=ConsEnd /STK=2 /UG=Rn.21201 /UG_TITLE=ESTs AI501031 1380942_at AW523594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523594 /DB_XREF=gi:7165979 /DB_XREF=UI-R-BO0-ahu-h-02-0-UI.s1 /CLONE=UI-R-BO0-ahu-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.58610.1 /TIER=ConsEnd /STK=2 /UG=Rn.58610 /UG_TITLE=ESTs AW523594 1380943_at BI301460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301460 /DB_XREF=gi:14977740 /DB_XREF=UI-R-DN0-cit-e-07-0-UI.s1 /CLONE=UI-R-DN0-cit-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.79338.1 /TIER=ConsEnd /STK=2 /UG=Rn.79338 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BI301460 similar to hypothetical protein FLJ21820 RGD1311648 313949 NM_001014075 0003824 // catalytic activity // inferred from electronic annotation 1380944_at AI146245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146245 /DB_XREF=gi:3668044 /DB_XREF=UI-R-BT0-qh-e-10-0-UI.s1 /CLONE=UI-R-BT0-qh-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.28781.1 /TIER=ConsEnd /STK=2 /UG=Rn.28781 /UG_TITLE=ESTs AI146245 1380945_at BE099407 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099407 /DB_XREF=gi:8491323 /DB_XREF=UI-R-BJ1-atw-e-07-0-UI.s1 /CLONE=UI-R-BJ1-atw-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.43273.1 /TIER=ConsEnd /STK=2 /UG=Rn.43273 /UG_TITLE=ESTs BE099407 1380946_at AW251808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251808 /DB_XREF=gi:6595399 /DB_XREF=UI-R-BJ0-adl-b-09-0-UI.s1 /CLONE=UI-R-BJ0-adl-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.44667.1 /TIER=ConsEnd /STK=2 /UG=Rn.44667 /UG_TITLE=ESTs AW251808 1380947_at BE108752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108752 /DB_XREF=gi:8500857 /DB_XREF=UI-R-BS1-ayy-a-10-0-UI.s1 /CLONE=UI-R-BS1-ayy-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.49035.1 /TIER=ConsEnd /STK=2 /UG=Rn.49035 /UG_TITLE=ESTs BE108752 1380948_at BF414312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414312 /DB_XREF=gi:11402342 /DB_XREF=UI-R-BJ2-bop-d-11-0-UI.s1 /CLONE=UI-R-BJ2-bop-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.53053.1 /TIER=ConsEnd /STK=2 /UG=Rn.53053 /UG_TITLE=ESTs BF414312 1380949_at BF409919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409919 /DB_XREF=gi:11397894 /DB_XREF=UI-R-CA1-bjy-d-01-0-UI.s1 /CLONE=UI-R-CA1-bjy-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.61528.1 /TIER=ConsEnd /STK=2 /UG=Rn.61528 /UG_TITLE=ESTs BF409919 1380950_at AW525135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525135 /DB_XREF=gi:7167520 /DB_XREF=UI-R-BJ0p-aio-b-11-0-UI.s1 /CLONE=UI-R-BJ0p-aio-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.45967.1 /TIER=ConsEnd /STK=2 /UG=Rn.45967 /UG_TITLE=ESTs AW525135 1380951_at BE096680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096680 /DB_XREF=gi:8487570 /DB_XREF=UI-R-BU0-api-e-12-0-UI.s1 /CLONE=UI-R-BU0-api-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.49456.1 /TIER=ConsEnd /STK=2 /UG=Rn.49456 /UG_TITLE=ESTs BE096680 1380952_at BF395639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395639 /DB_XREF=gi:11380609 /DB_XREF=UI-R-CM0-bjp-d-08-0-UI.s1 /CLONE=UI-R-CM0-bjp-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.51919.1 /TIER=ConsEnd /STK=2 /UG=Rn.51919 /UG_TITLE=ESTs BF395639 transcriptional adaptor 1 (HFI1 homolog, yeast) like Tada1l 360874 NM_001037980 0006350 // transcription // inferred from electronic annotation /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0043966 // histone H3 acetylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0030914 // STAGA complex // inferred from electronic annotation /// 0030914 // STAGA complex // not recorded 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // not recorded 1380953_at BE097660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097660 /DB_XREF=gi:8488591 /DB_XREF=UI-R-BO1-aqa-c-05-0-UI.s1 /CLONE=UI-R-BO1-aqa-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.59666.1 /TIER=ConsEnd /STK=2 /UG=Rn.59666 /UG_TITLE=ESTs BE097660 1380954_at BF386143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386143 /DB_XREF=gi:11370967 /DB_XREF=UI-R-CA1-bba-e-03-0-UI.s1 /CLONE=UI-R-CA1-bba-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.61949.1 /TIER=ConsEnd /STK=2 /UG=Rn.61949 /UG_TITLE=ESTs BF386143 1380955_at BE098501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098501 /DB_XREF=gi:8490365 /DB_XREF=UI-R-BJ1-atc-f-12-0-UI.s1 /CLONE=UI-R-BJ1-atc-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.49798.1 /TIER=ConsEnd /STK=2 /UG=Rn.49798 /UG_TITLE=ESTs BE098501 1380956_at BG672418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672418 /DB_XREF=gi:13894517 /DB_XREF=DRNCIB04 /CLONE=DRNCIB04 /FEA=EST /CNT=2 /TID=Rn.54320.1 /TIER=ConsEnd /STK=2 /UG=Rn.54320 /UG_TITLE=ESTs BG672418 Similar to nidogen 2 LOC367597 367597 1380957_at AW252086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252086 /DB_XREF=gi:6595677 /DB_XREF=UI-R-BJ0-aee-a-04-0-UI.s1 /CLONE=UI-R-BJ0-aee-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.44729.1 /TIER=ConsEnd /STK=2 /UG=Rn.44729 /UG_TITLE=ESTs, Weakly similar to S49330 serinethreonine kinase (H.sapiens) AW252086 cyclin-dependent kinase 10 Cdk10 361434 NM_001025722 /// NM_001109936 /// NM_001109937 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1380958_at BG671935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671935 /DB_XREF=gi:13894034 /DB_XREF=DRNBZG11 /CLONE=DRNBZG11 /FEA=EST /CNT=2 /TID=Rn.51012.1 /TIER=ConsEnd /STK=2 /UG=Rn.51012 /UG_TITLE=ESTs, Weakly similar to WN5A_RAT WNT-5A PROTEIN PRECURSOR (R.norvegicus) BG671935 wingless-type MMTV integration site family, member 7A Wnt7a 114850 NM_001100473 /// XM_001073379 /// XM_342723 0000578 // embryonic axis specification // not recorded /// 0007223 // Wnt receptor signaling pathway, calcium modulating pathway // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008105 // asymmetric protein localization // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0014719 // satellite cell activation // not recorded /// 0014834 // satellite cell maintenance involved in skeletal muscle regeneration // not recorded /// 0021707 // cerebellar granule cell differentiation // inferred from electronic annotation /// 0021707 // cerebellar granule cell differentiation // not recorded /// 0021846 // cell proliferation in forebrain // not recorded /// 0022009 // central nervous system vasculogenesis // not recorded /// 0030010 // establishment of cell polarity // not recorded /// 0030326 // embryonic limb morphogenesis // not recorded /// 0031133 // regulation of axon diameter // inferred from electronic annotation /// 0031133 // regulation of axon diameter // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0035019 // somatic stem cell maintenance // not recorded /// 0035115 // embryonic forelimb morphogenesis // inferred from electronic annotation /// 0035115 // embryonic forelimb morphogenesis // not recorded /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0035136 // forelimb morphogenesis // not recorded /// 0035137 // hindlimb morphogenesis // not recorded /// 0035567 // non-canonical Wnt receptor signaling pathway // not recorded /// 0042060 // wound healing // inferred from expression pattern /// 0042127 // regulation of cell proliferation // not recorded /// 0042733 // embryonic digit morphogenesis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043589 // skin morphogenesis // not recorded /// 0043627 // response to estrogen stimulus // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0046330 // positive regulation of JNK cascade // inferred from mutant phenotype /// 0046590 // embryonic leg morphogenesis // not recorded /// 0048103 // somatic stem cell division // not recorded /// 0048608 // reproductive structure development // not recorded /// 0048705 // skeletal system morphogenesis // not recorded /// 0048864 // stem cell development // not recorded /// 0050768 // negative regulation of neurogenesis // not recorded /// 0050770 // regulation of axonogenesis // not recorded /// 0050808 // synapse organization // inferred from electronic annotation /// 0050808 // synapse organization // not recorded /// 0051216 // cartilage development // not recorded /// 0051965 // positive regulation of synaptogenesis // inferred from electronic annotation /// 0051965 // positive regulation of synaptogenesis // not recorded /// 0060021 // palate development // not recorded /// 0060054 // positive regulation of epithelial cell proliferation involved in wound healing // not recorded /// 0060065 // uterus development // inferred from electronic annotation /// 0060065 // uterus development // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // inferred from mutant phenotype /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060173 // limb development // not recorded /// 0071560 // cellular response to transforming growth factor beta stimulus // not recorded /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0031012 // extracellular matrix // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0005109 // frizzled binding // inferred from physical interaction /// 0005109 // frizzled binding // not recorded /// 0005125 // cytokine activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1380959_at BF409576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409576 /DB_XREF=gi:11397551 /DB_XREF=UI-R-CA1-blm-a-04-0-UI.s1 /CLONE=UI-R-CA1-blm-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.61403.1 /TIER=ConsEnd /STK=2 /UG=Rn.61403 /UG_TITLE=ESTs BF409576 1380960_at BF412996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412996 /DB_XREF=gi:11400985 /DB_XREF=UI-R-BT1-bnv-c-12-0-UI.s1 /CLONE=UI-R-BT1-bnv-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.66990.1 /TIER=ConsEnd /STK=2 /UG=Rn.66990 /UG_TITLE=ESTs BF412996 coronin, actin binding protein 2A Coro2a 313235 NM_001012101 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // not recorded 0005488 // binding // inferred from electronic annotation 1380961_at AW526232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526232 /DB_XREF=gi:7168617 /DB_XREF=UI-R-BO1-aju-f-06-0-UI.s1 /CLONE=UI-R-BO1-aju-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.46128.1 /TIER=ConsEnd /STK=2 /UG=Rn.46128 /UG_TITLE=ESTs AW526232 1380962_at BE098785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098785 /DB_XREF=gi:8490654 /DB_XREF=UI-R-BJ1-atd-h-01-0-UI.s1 /CLONE=UI-R-BJ1-atd-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.49822.1 /TIER=ConsEnd /STK=2 /UG=Rn.49822 /UG_TITLE=ESTs BE098785 Angiotensin I converting enzyme (peptidyl-dipeptidase A) 2 Ace2 302668 NM_001012006 0003051 // angiotensin-mediated drinking behavior // not recorded /// 0003081 // regulation of systemic arterial blood pressure by renin-angiotensin // not recorded /// 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0032800 // receptor biosynthetic process // not recorded /// 0042312 // regulation of vasodilation // traceable author statement /// 0046813 // virion attachment, binding of host cell surface receptor // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001618 // viral receptor activity // not recorded /// 0001948 // glycoprotein binding // not recorded /// 0004180 // carboxypeptidase activity // inferred from direct assay /// 0004180 // carboxypeptidase activity // not recorded /// 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred by curator /// 0008237 // metallopeptidase activity // not recorded /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008241 // peptidyl-dipeptidase activity // inferred from electronic annotation /// 0008241 // peptidyl-dipeptidase activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred from direct assay /// 0042277 // peptide binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1380963_at BE121320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121320 /DB_XREF=gi:8513425 /DB_XREF=UI-R-CA0-baw-e-08-0-UI.s1 /CLONE=UI-R-CA0-baw-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.53808.1 /TIER=ConsEnd /STK=2 /UG=Rn.53808 /UG_TITLE=ESTs BE121320 1380964_at BF396607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396607 /DB_XREF=gi:11381582 /DB_XREF=UI-R-BS2-bea-b-01-0-UI.s1 /CLONE=UI-R-BS2-bea-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.58641.1 /TIER=ConsEnd /STK=2 /UG=Rn.58641 /UG_TITLE=ESTs BF396607 1380965_at BF387640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387640 /DB_XREF=gi:11372464 /DB_XREF=UI-R-CA1-bbs-g-01-0-UI.s1 /CLONE=UI-R-CA1-bbs-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.58804.1 /TIER=ConsEnd /STK=2 /UG=Rn.58804 /UG_TITLE=ESTs BF387640 1380966_at BE117653 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117653 /DB_XREF=gi:8509758 /DB_XREF=UI-R-BS1-aze-d-01-0-UI.s1 /CLONE=UI-R-BS1-aze-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.16552.1 /TIER=ConsEnd /STK=2 /UG=Rn.16552 /UG_TITLE=ESTs BE117653 1380967_at BE101670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101670 /DB_XREF=gi:8493768 /DB_XREF=UI-R-BT1-aqg-g-11-0-UI.s1 /CLONE=UI-R-BT1-aqg-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.44222.1 /TIER=ConsEnd /STK=2 /UG=Rn.44222 /UG_TITLE=ESTs, Highly similar to NEUT RAT NEUROTENSINNEUROMEDIN N PRECURSOR (R.norvegicus) BE101670 neurotensin Nts 299757 NM_001102381 0050880 // regulation of blood vessel size // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005184 // neuropeptide hormone activity // inferred from electronic annotation 1380968_at BE101985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101985 /DB_XREF=gi:8494083 /DB_XREF=UI-R-BT1-aqi-h-10-0-UI.s1 /CLONE=UI-R-BT1-aqi-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.50176.1 /TIER=ConsEnd /STK=2 /UG=Rn.50176 /UG_TITLE=ESTs BE101985 1380969_at BE106363 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106363 /DB_XREF=gi:8498465 /DB_XREF=UI-R-BT1-asv-b-01-0-UI.s1 /CLONE=UI-R-BT1-asv-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.58038.1 /TIER=ConsEnd /STK=2 /UG=Rn.58038 /UG_TITLE=ESTs BE106363 1380970_at BI281399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281399 /DB_XREF=gi:14931083 /DB_XREF=UI-R-DC0-bzj-e-12-0-UI.s1 /CLONE=UI-R-DC0-bzj-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.21307.1 /TIER=ConsEnd /STK=2 /UG=Rn.21307 /UG_TITLE=ESTs BI281399 1380971_at BE120747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120747 /DB_XREF=gi:8512892 /DB_XREF=UI-R-BS1-azs-e-10-0-UI.s1 /CLONE=UI-R-BS1-azs-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.28746.1 /TIER=ConsEnd /STK=2 /UG=Rn.28746 /UG_TITLE=ESTs BE120747 1380972_at AI176450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176450 /DB_XREF=gi:4134876 /DB_XREF=EST220035 /CLONE=ROVBR87 /FEA=EST /CNT=2 /TID=Rn.28999.1 /TIER=ConsEnd /STK=2 /UG=Rn.28999 /UG_TITLE=ESTs AI176450 1380973_at BG376835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376835 /DB_XREF=gi:13301307 /DB_XREF=UI-R-CA1-blh-g-05-0-UI.s1 /CLONE=UI-R-CA1-blh-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.66432.1 /TIER=ConsEnd /STK=2 /UG=Rn.66432 /UG_TITLE=ESTs BG376835 1380974_at BG381707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381707 /DB_XREF=gi:13306179 /DB_XREF=UI-R-CT0-bue-e-03-0-UI.s1 /CLONE=UI-R-CT0-bue-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.66835.1 /TIER=ConsEnd /STK=2 /UG=Rn.66835 /UG_TITLE=ESTs BG381707 1380975_at AW534466 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534466 /DB_XREF=gi:7176880 /DB_XREF=UI-R-C4-aln-h-08-0-UI.s1 /CLONE=UI-R-C4-aln-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.17586.1 /TIER=ConsEnd /STK=2 /UG=Rn.17586 /UG_TITLE=ESTs AW534466 1380976_at BF396723 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396723 /DB_XREF=gi:11381703 /DB_XREF=UI-R-BS2-beu-d-08-0-UI.s1 /CLONE=UI-R-BS2-beu-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.21387.2 /TIER=ConsEnd /STK=2 /UG=Rn.21387 /UG_TITLE=ESTs BF396723 1380977_at BM384974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384974 /DB_XREF=gi:18185027 /DB_XREF=UI-R-CN1-cjl-p-06-0-UI.s2 /CLONE=UI-R-CN1-cjl-p-06-0-UI /FEA=EST /CNT=2 /TID=Rn.50135.1 /TIER=ConsEnd /STK=2 /UG=Rn.50135 /UG_TITLE=ESTs BM384974 1380978_at AI044494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044494 /DB_XREF=gi:3291355 /DB_XREF=UI-R-C1-jw-f-11-0-UI.s1 /CLONE=UI-R-C1-jw-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.15924.1 /TIER=ConsEnd /STK=2 /UG=Rn.15924 /UG_TITLE=ESTs AI044494 1380979_a_at AW523336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523336 /DB_XREF=gi:7165721 /DB_XREF=UI-R-BO0-aif-b-02-0-UI.s1 /CLONE=UI-R-BO0-aif-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.24931.2 /TIER=ConsEnd /STK=2 /UG=Rn.24931 /UG_TITLE=ESTs AW523336 similar to KIAA0913 protein RGD1309414 361004 XM_001057186 /// XM_002725030 /// XM_002728151 /// XM_341279 0008270 // zinc ion binding // inferred from electronic annotation 1380980_at AW523336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523336 /DB_XREF=gi:7165721 /DB_XREF=UI-R-BO0-aif-b-02-0-UI.s1 /CLONE=UI-R-BO0-aif-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.24931.2 /TIER=ConsEnd /STK=2 /UG=Rn.24931 /UG_TITLE=ESTs AW523336 similar to KIAA0913 protein RGD1309414 361004 XM_001057186 /// XM_002725030 /// XM_002728151 /// XM_341279 0008270 // zinc ion binding // inferred from electronic annotation 1380981_at AW534519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534519 /DB_XREF=gi:7176933 /DB_XREF=UI-R-BS0-ans-e-07-0-UI.s1 /CLONE=UI-R-BS0-ans-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.48347.1 /TIER=ConsEnd /STK=2 /UG=Rn.48347 /UG_TITLE=ESTs AW534519 Stonin 2 Ston2 314349 NM_001135874 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0030100 // regulation of endocytosis // not recorded 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0030131 // clathrin adaptor complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1380982_at BF412273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412273 /DB_XREF=gi:11400262 /DB_XREF=UI-R-BT1-bnb-e-05-0-UI.s1 /CLONE=UI-R-BT1-bnb-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.62047.1 /TIER=ConsEnd /STK=2 /UG=Rn.62047 /UG_TITLE=ESTs, Weakly similar to T22294 hypothetical protein F46B6.5 - Caenorhabditis elegans (C.elegans) BF412273 1380983_at AW524497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524497 /DB_XREF=gi:7166882 /DB_XREF=UI-R-BO0-ahz-b-05-0-UI.s1 /CLONE=UI-R-BO0-ahz-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.57696.1 /TIER=ConsEnd /STK=2 /UG=Rn.57696 /UG_TITLE=ESTs AW524497 1380984_at BF401369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401369 /DB_XREF=gi:11389344 /DB_XREF=UI-R-CA0-bgs-h-03-0-UI.s1 /CLONE=UI-R-CA0-bgs-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.62688.1 /TIER=ConsEnd /STK=2 /UG=Rn.62688 /UG_TITLE=ESTs BF401369 1380985_at BG373668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373668 /DB_XREF=gi:13270205 /DB_XREF=UI-R-CV1-bsg-e-07-0-UI.s1 /CLONE=UI-R-CV1-bsg-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.67026.1 /TIER=ConsEnd /STK=2 /UG=Rn.67026 /UG_TITLE=ESTs BG373668 1380986_at BF390376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390376 /DB_XREF=gi:11375222 /DB_XREF=UI-R-CA1-bcg-c-08-0-UI.s1 /CLONE=UI-R-CA1-bcg-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.53234.1 /TIER=ConsEnd /STK=2 /UG=Rn.53234 /UG_TITLE=ESTs BF390376 1380987_at AW525937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525937 /DB_XREF=gi:7168322 /DB_XREF=UI-R-BO1-aiw-e-01-0-UI.s1 /CLONE=UI-R-BO1-aiw-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.53953.1 /TIER=ConsEnd /STK=2 /UG=Rn.53953 /UG_TITLE=ESTs, Highly similar to AAMP_HUMAN ANGIO-ASSOCIATED MIGRATORY CELL PROTEIN (H.sapiens) AW525937 angio-associated, migratory cell protein Aamp 301512 NM_001106920 0014909 // smooth muscle cell migration // not recorded 0009986 // cell surface // not recorded 1380988_at BF405006 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405006 /DB_XREF=gi:11392981 /DB_XREF=UI-R-CA1-bio-d-02-0-UI.s1 /CLONE=UI-R-CA1-bio-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.63301.1 /TIER=ConsEnd /STK=2 /UG=Rn.63301 /UG_TITLE=ESTs BF405006 1380989_at BG376433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376433 /DB_XREF=gi:13300905 /DB_XREF=UI-R-CU0-but-d-09-0-UI.s1 /CLONE=UI-R-CU0-but-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.66392.1 /TIER=ConsEnd /STK=2 /UG=Rn.66392 /UG_TITLE=ESTs, Moderately similar to S23647 NuMA protein (H.sapiens) BG376433 nuclear mitotic apparatus protein 1 Numa1 308870 XM_001068093 /// XM_218972 0007165 // signal transduction // inferred from electronic annotation /// 0051321 // meiotic cell cycle // inferred from expression pattern 0000922 // spindle pole // inferred from direct assay /// 0000922 // spindle pole // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005829 // cytosol // not recorded /// 0005876 // spindle microtubule // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0000155 // two-component sensor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // inferred from direct assay 1380990_at BI296797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296797 /DB_XREF=gi:14961581 /DB_XREF=UI-R-DK0-cfz-d-11-0-UI.s1 /CLONE=UI-R-DK0-cfz-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.57322.1 /TIER=ConsEnd /STK=2 /UG=Rn.57322 /UG_TITLE=ESTs BI296797 hypothetical protein LOC100362471 LOC100362471 100362471 XM_002729582 1380991_at AI145767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145767 /DB_XREF=gi:3667566 /DB_XREF=UI-R-BT0-py-e-08-0-UI.s1 /CLONE=UI-R-BT0-py-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.60806.1 /TIER=ConsEnd /STK=2 /UG=Rn.60806 /UG_TITLE=ESTs AI145767 Protein prenyltransferase alpha subunit repeat containing 1 Ptar1 286972 NM_001105760 0008318 // protein prenyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1380992_at AI111694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111694 /DB_XREF=gi:3511643 /DB_XREF=UI-R-Y0-mf-c-04-0-UI.s1 /CLONE=UI-R-Y0-mf-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.26610.1 /TIER=ConsEnd /STK=2 /UG=Rn.26610 /UG_TITLE=ESTs AI111694 1380993_at AI409057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409057 /DB_XREF=gi:4252561 /DB_XREF=EST237349 /CLONE=RKIDO68 /FEA=EST /CNT=2 /TID=Rn.34667.1 /TIER=ConsEnd /STK=2 /UG=Rn.34667 /UG_TITLE=ESTs AI409057 family with sequence similarity 20, member B Fam20b 304885 NM_001107187 0005794 // Golgi apparatus // not recorded 0016773 // phosphotransferase activity, alcohol group as acceptor // not recorded 1380994_at BG374428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374428 /DB_XREF=gi:13298900 /DB_XREF=UI-R-CV1-bsp-c-08-0-UI.s1 /CLONE=UI-R-CV1-bsp-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.73039.1 /TIER=ConsEnd /STK=2 /UG=Rn.73039 /UG_TITLE=ESTs BG374428 OTU domain containing 7B Otud7b 310677 NM_001107697 0016579 // protein deubiquitination // not recorded /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1380995_at BF412118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412118 /DB_XREF=gi:11400107 /DB_XREF=UI-R-BT1-bmy-h-07-0-UI.s1 /CLONE=UI-R-BT1-bmy-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.19117.1 /TIER=ConsEnd /STK=2 /UG=Rn.19117 /UG_TITLE=ESTs BF412118 1380996_at BE112025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112025 /DB_XREF=gi:8504095 /DB_XREF=UI-R-BJ1-ave-d-07-0-UI.s1 /CLONE=UI-R-BJ1-ave-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.44070.1 /TIER=ConsEnd /STK=2 /UG=Rn.44070 /UG_TITLE=ESTs BE112025 1380997_at BE103561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103561 /DB_XREF=gi:8495661 /DB_XREF=UI-R-BX0-ard-f-10-0-UI.s1 /CLONE=UI-R-BX0-ard-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.50277.1 /TIER=ConsEnd /STK=2 /UG=Rn.50277 /UG_TITLE=ESTs BE103561 cyclin J Ccnj 294053 NM_001106369 0005634 // nucleus // inferred from electronic annotation 1380998_at BF412962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412962 /DB_XREF=gi:11400951 /DB_XREF=UI-R-CA0-boc-h-02-0-UI.s1 /CLONE=UI-R-CA0-boc-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.62207.1 /TIER=ConsEnd /STK=2 /UG=Rn.62207 /UG_TITLE=ESTs BF412962 1380999_at AI175670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175670 /DB_XREF=gi:3726308 /DB_XREF=EST219230 /CLONE=ROVBD53 /FEA=EST /CNT=2 /TID=Rn.65892.1 /TIER=ConsEnd /STK=2 /UG=Rn.65892 /UG_TITLE=ESTs AI175670 1381000_at BM386311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386311 /DB_XREF=gi:18186364 /DB_XREF=UI-R-CN1-cjf-h-19-0-UI.s1 /CLONE=UI-R-CN1-cjf-h-19-0-UI /FEA=EST /CNT=2 /TID=Rn.74541.1 /TIER=ConsEnd /STK=2 /UG=Rn.74541 /UG_TITLE=ESTs BM386311 1381001_at BE105897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105897 /DB_XREF=gi:8497999 /DB_XREF=UI-R-BO1-asj-e-02-0-UI.s1 /CLONE=UI-R-BO1-asj-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.24765.1 /TIER=ConsEnd /STK=2 /UG=Rn.24765 /UG_TITLE=ESTs BE105897 1381002_at AI711108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711108 /DB_XREF=gi:5000884 /DB_XREF=UI-R-AD1-zo-c-03-0-UI.s1 /CLONE=UI-R-AD1-zo-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.44731.1 /TIER=ConsEnd /STK=2 /UG=Rn.44731 /UG_TITLE=ESTs AI711108 ankyrin repeat and SOCS box-containing 1 Asb1 316628 NM_001108232 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030539 // male genitalia development // inferred from electronic annotation /// 0030539 // male genitalia development // not recorded 1381003_at BE096129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096129 /DB_XREF=gi:8487060 /DB_XREF=UI-R-BU0-apj-d-03-0-UI.s1 /CLONE=UI-R-BU0-apj-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.48968.1 /TIER=ConsEnd /STK=2 /UG=Rn.48968 /UG_TITLE=ESTs, Moderately similar to HELI MOUSE ZINC FINGER PROTEIN HELIOS (M.musculus) BE096129 1381004_at BF389511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389511 /DB_XREF=gi:11374346 /DB_XREF=UI-R-CJ0-bfc-f-01-0-UI.s1 /CLONE=UI-R-CJ0-bfc-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.49610.1 /TIER=ConsEnd /STK=2 /UG=Rn.49610 /UG_TITLE=ESTs BF389511 similar to BC049730 protein RGD1564380 292711 NM_001170329 1381005_at BE106535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106535 /DB_XREF=gi:8498637 /DB_XREF=UI-R-BO1-asp-b-05-0-UI.s1 /CLONE=UI-R-BO1-asp-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.50986.1 /TIER=ConsEnd /STK=2 /UG=Rn.50986 /UG_TITLE=ESTs, Highly similar to ATPase, class 1, member a; ATPase 8A2, p type; ATPase 8A2, class I (Mus musculus) (M.musculus) BE106535 similar to ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 LOC691889 691889 XR_085627 /// XR_086029 1381006_at BE119649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119649 /DB_XREF=gi:8511754 /DB_XREF=UI-R-CA0-baz-d-02-0-UI.s1 /CLONE=UI-R-CA0-baz-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.53307.1 /TIER=ConsEnd /STK=2 /UG=Rn.53307 /UG_TITLE=ESTs, Weakly similar to UROK RAT UROKINASE-TYPE PLASMINOGEN ACTIVATOR PRECURSOR (R.norvegicus) BE119649 hepatocyte growth factor activator Hgfac 58947 NM_053320 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1381007_at BE117875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117875 /DB_XREF=gi:8509980 /DB_XREF=UI-R-BS1-azm-a-07-0-UI.s1 /CLONE=UI-R-BS1-azm-a-07-0-UI /FEA=EST /CNT=2 /TID=Rn.19649.1 /TIER=ConsEnd /STK=2 /UG=Rn.19649 /UG_TITLE=ESTs BE117875 1381008_at BF390077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390077 /DB_XREF=gi:11374919 /DB_XREF=UI-R-CA1-bcj-a-02-0-UI.s1 /CLONE=UI-R-CA1-bcj-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.56912.1 /TIER=ConsEnd /STK=2 /UG=Rn.56912 /UG_TITLE=ESTs BF390077 1381009_at BF403637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403637 /DB_XREF=gi:11391612 /DB_XREF=UI-R-CA1-bjd-p-14-0-UI.s1 /CLONE=UI-R-CA1-bjd-p-14-0-UI /FEA=EST /CNT=2 /TID=Rn.57817.1 /TIER=ConsEnd /STK=2 /UG=Rn.57817 /UG_TITLE=ESTs BF403637 1381010_at BF412543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412543 /DB_XREF=gi:11400532 /DB_XREF=UI-R-BT1-bno-h-08-0-UI.s1 /CLONE=UI-R-BT1-bno-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.62107.1 /TIER=ConsEnd /STK=2 /UG=Rn.62107 /UG_TITLE=ESTs BF412543 1381011_at BF402331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402331 /DB_XREF=gi:11390306 /DB_XREF=UI-R-CA0-bhn-a-05-0-UI.s1 /CLONE=UI-R-CA0-bhn-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.62787.1 /TIER=ConsEnd /STK=2 /UG=Rn.62787 /UG_TITLE=ESTs BF402331 1381012_at BI303349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303349 /DB_XREF=gi:14979629 /DB_XREF=UI-R-DR0-cjb-l-19-0-UI.s1 /CLONE=UI-R-DR0-cjb-l-19-0-UI /FEA=EST /CNT=2 /TID=Rn.32152.1 /TIER=ConsEnd /STK=2 /UG=Rn.32152 /UG_TITLE=ESTs BI303349 Serine (or cysteine) peptidase inhibitor, clade F, member 1 Serpinf1 287526 NM_177927 0001822 // kidney development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0007614 // short-term memory // inferred from direct assay /// 0016525 // negative regulation of angiogenesis // not recorded /// 0016525 // negative regulation of angiogenesis // traceable author statement /// 0016525 // negative regulation of angiogenesis // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0050728 // negative regulation of inflammatory response // inferred from mutant phenotype /// 0050769 // positive regulation of neurogenesis // inferred from electronic annotation /// 0050769 // positive regulation of neurogenesis // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0060770 // negative regulation of epithelial cell proliferation involved in prostate gland development // inferred from electronic annotation /// 0060770 // negative regulation of epithelial cell proliferation involved in prostate gland development // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0004867 // serine-type endopeptidase inhibitor activity // traceable author statement /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation 1381013_at AI235868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235868 /DB_XREF=gi:3829374 /DB_XREF=EST232430 /CLONE=ROVCY02 /FEA=EST /CNT=2 /TID=Rn.42092.1 /TIER=ConsEnd /STK=2 /UG=Rn.42092 /UG_TITLE=ESTs AI235868 1381014_at BI274623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274623 /DB_XREF=gi:14885702 /DB_XREF=UI-R-CX0-bws-b-01-0-UI.s1 /CLONE=UI-R-CX0-bws-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.43876.1 /TIER=ConsEnd /STK=2 /UG=Rn.43876 /UG_TITLE=ESTs, Weakly similar to S48218 microtubular aggregate protein (H.sapiens) BI274623 interferon-induced protein 44 Ifi44 310969 NM_001107729 1381015_at BM386901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386901 /DB_XREF=gi:18186959 /DB_XREF=UI-R-CN1-cjh-j-12-0-UI.s1 /CLONE=UI-R-CN1-cjh-j-12-0-UI /FEA=EST /CNT=2 /TID=Rn.49983.1 /TIER=ConsEnd /STK=2 /UG=Rn.49983 /UG_TITLE=ESTs BM386901 1381016_at BI288152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288152 /DB_XREF=gi:14944454 /DB_XREF=UI-R-DK0-cdc-e-08-0-UI.s1 /CLONE=UI-R-DK0-cdc-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.73677.1 /TIER=ConsEnd /STK=2 /UG=Rn.73677 /UG_TITLE=ESTs BI288152 1381017_at AA925043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925043 /DB_XREF=gi:4236234 /DB_XREF=UI-R-A1-en-e-03-0-UI.s1 /CLONE=UI-R-A1-en-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.15444.1 /TIER=ConsEnd /STK=2 /UG=Rn.15444 /UG_TITLE=ESTs AA925043 1381018_a_at BG378709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378709 /DB_XREF=gi:13303181 /DB_XREF=UI-R-BT1-bnj-h-08-0-UI.s1 /CLONE=UI-R-BT1-bnj-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.19072.1 /TIER=ConsEnd /STK=2 /UG=Rn.19072 /UG_TITLE=ESTs BG378709 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 Asap1 314961 NM_001044245 0007165 // signal transduction // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation /// 0046847 // filopodium assembly // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008093 // cytoskeletal adaptor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1381019_x_at BG378709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378709 /DB_XREF=gi:13303181 /DB_XREF=UI-R-BT1-bnj-h-08-0-UI.s1 /CLONE=UI-R-BT1-bnj-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.19072.1 /TIER=ConsEnd /STK=2 /UG=Rn.19072 /UG_TITLE=ESTs BG378709 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 Asap1 314961 NM_001044245 0007165 // signal transduction // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation /// 0046847 // filopodium assembly // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008093 // cytoskeletal adaptor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1381020_at BE102110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102110 /DB_XREF=gi:8494209 /DB_XREF=UI-R-BT1-aqj-e-03-0-UI.s1 /CLONE=UI-R-BT1-aqj-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.49335.1 /TIER=ConsEnd /STK=2 /UG=Rn.49335 /UG_TITLE=ESTs BE102110 1381021_at BG372657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372657 /DB_XREF=gi:13269194 /DB_XREF=UI-R-CV1-brs-h-02-0-UI.s1 /CLONE=UI-R-CV1-brs-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.66746.1 /TIER=ConsEnd /STK=2 /UG=Rn.66746 /UG_TITLE=ESTs, Highly similar to T12506 hypothetical protein DKFZp434C212.1 (H.sapiens) BG372657 GTPase activating protein and VPS9 domains 1 Gapvd1 311880 XM_001078902 /// XM_231161 0007165 // signal transduction // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation /// 0051223 // regulation of protein transport // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0032794 // GTPase activating protein binding // not recorded 1381022_at BI276121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276121 /DB_XREF=gi:14920728 /DB_XREF=UI-R-CX0-bwz-c-12-0-UI.s1 /CLONE=UI-R-CX0-bwz-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.41881.1 /TIER=ConsEnd /STK=2 /UG=Rn.41881 /UG_TITLE=ESTs BI276121 cartilage intermediate layer protein 2 Cilp2 306356 NM_001107307 0004035 // alkaline phosphatase activity // not recorded /// 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004551 // nucleotide diphosphatase activity // not recorded 1381023_at AW526145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526145 /DB_XREF=gi:7168530 /DB_XREF=UI-R-BO1-aiz-f-11-0-UI.s1 /CLONE=UI-R-BO1-aiz-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.46098.1 /TIER=ConsEnd /STK=2 /UG=Rn.46098 /UG_TITLE=ESTs AW526145 1381024_at BF394544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394544 /DB_XREF=gi:11379410 /DB_XREF=UI-R-CA0-bfx-a-12-0-UI.s1 /CLONE=UI-R-CA0-bfx-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.57224.1 /TIER=ConsEnd /STK=2 /UG=Rn.57224 /UG_TITLE=ESTs, Highly similar to A47187 phosphoprotein phosphatase (M.musculus) BF394544 protein phosphatase 2 (formerly 2A), regulatory subunit A, alpha isoform Ppp2r1a 117281 NM_057140 0007059 // chromosome segregation // inferred from electronic annotation /// 0007059 // chromosome segregation // not recorded 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation /// 0000159 // protein phosphatase type 2A complex // not recorded /// 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000775 // chromosome, centromeric region // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003823 // antigen binding // inferred from electronic annotation /// 0003823 // antigen binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1381025_at BF410266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410266 /DB_XREF=gi:11398241 /DB_XREF=UI-R-CA1-bjv-d-11-0-UI.s1 /CLONE=UI-R-CA1-bjv-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.66654.1 /TIER=ConsEnd /STK=2 /UG=Rn.66654 /UG_TITLE=ESTs BF410266 1381026_at BF391155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391155 /DB_XREF=gi:11376002 /DB_XREF=UI-R-CA1-bcd-h-07-0-UI.s1 /CLONE=UI-R-CA1-bcd-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.50159.1 /TIER=ConsEnd /STK=2 /UG=Rn.50159 /UG_TITLE=ESTs BF391155 1381027_at BF393571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393571 /DB_XREF=gi:11378433 /DB_XREF=UI-R-CA0-bgd-d-11-0-UI.s1 /CLONE=UI-R-CA0-bgd-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.61119.1 /TIER=ConsEnd /STK=2 /UG=Rn.61119 /UG_TITLE=ESTs BF393571 1381028_at BF417583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417583 /DB_XREF=gi:11405572 /DB_XREF=UI-R-CN0-blp-g-10-0-UI.s1 /CLONE=UI-R-CN0-blp-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.62081.1 /TIER=ConsEnd /STK=2 /UG=Rn.62081 /UG_TITLE=ESTs BF417583 1381029_at AI764144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764144 /DB_XREF=gi:5210079 /DB_XREF=UI-R-Y0-acr-d-05-0-UI.s1 /CLONE=UI-R-Y0-acr-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.64904.1 /TIER=ConsEnd /STK=2 /UG=Rn.64904 /UG_TITLE=ESTs, Moderately similar to I54530 MHC class I - mouse (M.musculus) AI764144 MHC class I RT1.O type 149 processed pseudogene /// RT1 class I, locus T24, gene 3 /// RT1 class I, locus T24, gene 4 LOC360231 /// RT1-T24-3 /// RT1-T24-4 360231 /// 414784 /// 414788 NM_001008826 /// NM_001166403 /// NR_002597 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 1381030_at AI411326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411326 /DB_XREF=gi:4254830 /DB_XREF=EST239620 /CLONE=RKIEU49 /FEA=EST /CNT=2 /TID=Rn.79751.1 /TIER=ConsEnd /STK=2 /UG=Rn.79751 /UG_TITLE=ESTs, Weakly similar to Zinc finger, CCHC class (Caenorhabditis elegans) (C.elegans) AI411326 SLU7 splicing factor homolog (S. cerevisiae) Slu7 303057 NM_001100550 0000375 // RNA splicing, via transesterification reactions // not recorded /// 0000375 // RNA splicing, via transesterification reactions // inferred from sequence or structural similarity /// 0000375 // RNA splicing, via transesterification reactions // inferred from electronic annotation /// 0000380 // alternative nuclear mRNA splicing, via spliceosome // not recorded /// 0000380 // alternative nuclear mRNA splicing, via spliceosome // inferred from sequence or structural similarity /// 0000380 // alternative nuclear mRNA splicing, via spliceosome // inferred from electronic annotation /// 0000389 // nuclear mRNA 3'-splice site recognition // not recorded /// 0000389 // nuclear mRNA 3'-splice site recognition // inferred from sequence or structural similarity /// 0000389 // nuclear mRNA 3'-splice site recognition // inferred from electronic annotation /// 0001558 // regulation of cell growth // inferred from mutant phenotype /// 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008380 // RNA splicing // inferred from electronic annotation /// 0045143 // homologous chromosome segregation // inferred from electronic annotation /// 0051276 // chromosome organization // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded /// 0005681 // spliceosomal complex // inferred from sequence or structural similarity /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded /// 0016607 // nuclear speck // inferred from sequence or structural similarity /// 0016607 // nuclear speck // inferred from electronic annotation /// 0030532 // small nuclear ribonucleoprotein complex // not recorded /// 0030532 // small nuclear ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030532 // small nuclear ribonucleoprotein complex // inferred from electronic annotation 0000386 // second spliceosomal transesterification activity // not recorded /// 0000386 // second spliceosomal transesterification activity // inferred from sequence or structural similarity /// 0000386 // second spliceosomal transesterification activity // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0030628 // pre-mRNA 3'-splice site binding // not recorded /// 0030628 // pre-mRNA 3'-splice site binding // inferred from sequence or structural similarity /// 0030628 // pre-mRNA 3'-splice site binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from physical interaction /// 0043022 // ribosome binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1381031_at BE108144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108144 /DB_XREF=gi:8500249 /DB_XREF=UI-R-CA0-axa-h-11-0-UI.s1 /CLONE=UI-R-CA0-axa-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.17991.1 /TIER=ConsEnd /STK=2 /UG=Rn.17991 /UG_TITLE=ESTs BE108144 1381032_at AI600022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600022 /DB_XREF=gi:4609070 /DB_XREF=EST251725 /CLONE=REMDO43 /FEA=EST /CNT=2 /TID=Rn.40528.1 /TIER=ConsEnd /STK=2 /UG=Rn.40528 /UG_TITLE=ESTs AI600022 1381033_at BF413686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413686 /DB_XREF=gi:11401675 /DB_XREF=UI-R-CA0-boh-d-01-0-UI.s1 /CLONE=UI-R-CA0-boh-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.62424.1 /TIER=ConsEnd /STK=2 /UG=Rn.62424 /UG_TITLE=ESTs BF413686 1381034_at AI029140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029140 /DB_XREF=gi:4296498 /DB_XREF=UI-R-C0-ip-f-11-0-UI.s1 /CLONE=UI-R-C0-ip-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.18155.1 /TIER=ConsEnd /STK=2 /UG=Rn.18155 /UG_TITLE=ESTs AI029140 wingless-type MMTV integration site family, member 10A Wnt10a 316527 NM_001108227 0001942 // hair follicle development // not recorded /// 0007223 // Wnt receptor signaling pathway, calcium modulating pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0014033 // neural crest cell differentiation // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // not recorded /// 0042476 // odontogenesis // not recorded /// 0042487 // regulation of odontogenesis of dentine-containing tooth // not recorded /// 0043586 // tongue development // not recorded /// 0043588 // skin development // not recorded /// 0048730 // epidermis morphogenesis // not recorded /// 0048733 // sebaceous gland development // not recorded /// 0071560 // cellular response to transforming growth factor beta stimulus // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation 1381035_at AI235476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235476 /DB_XREF=gi:3828982 /DB_XREF=EST232038 /CLONE=ROVCS30 /FEA=EST /CNT=2 /TID=Rn.25325.1 /TIER=ConsEnd /STK=2 /UG=Rn.25325 /UG_TITLE=ESTs AI235476 1381036_at AW434394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434394 /DB_XREF=gi:6965701 /DB_XREF=UI-R-BJ0p-afl-f-05-0-UI.s1 /CLONE=UI-R-BJ0p-afl-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.27015.1 /TIER=ConsEnd /STK=2 /UG=Rn.27015 /UG_TITLE=ESTs AW434394 1381037_at AI146059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146059 /DB_XREF=gi:3667858 /DB_XREF=UI-R-BT0-qg-f-10-0-UI.s1 /CLONE=UI-R-BT0-qg-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.28720.1 /TIER=ConsEnd /STK=2 /UG=Rn.28720 /UG_TITLE=ESTs AI146059 1381038_at BE101442 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101442 /DB_XREF=gi:8493357 /DB_XREF=UI-R-BJ1-auj-a-09-0-UI.s1 /CLONE=UI-R-BJ1-auj-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.43589.1 /TIER=ConsEnd /STK=2 /UG=Rn.43589 /UG_TITLE=ESTs BE101442 1381039_at BF416970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416970 /DB_XREF=gi:11404959 /DB_XREF=UI-R-CN0-bkw-c-01-0-UI.s1 /CLONE=UI-R-CN0-bkw-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.49334.1 /TIER=ConsEnd /STK=2 /UG=Rn.49334 /UG_TITLE=ESTs, Moderately similar to T17227 hypothetical protein DKFZp434A236.1 (H.sapiens) BF416970 dynein, axonemal, heavy chain 1 Dnah1 171339 NM_001033655 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007018 // microtubule-based movement // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0030286 // dynein complex // inferred from electronic annotation /// 0035085 // cilium axoneme // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation 1381040_at BE108608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108608 /DB_XREF=gi:8500713 /DB_XREF=UI-R-CA0-axg-c-09-0-UI.s1 /CLONE=UI-R-CA0-axg-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.51546.1 /TIER=ConsEnd /STK=2 /UG=Rn.51546 /UG_TITLE=ESTs, Moderately similar to T31068 N-methyl-D-aspartate receptor homolog NMDAR-L - rat (R.norvegicus) BE108608 Glutamate receptor, ionotropic, N-methyl-D-aspartate 3B Grin3b 170796 NM_133308 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from direct assay /// 0051205 // protein insertion into membrane // inferred from electronic annotation /// 0051205 // protein insertion into membrane // not recorded /// 0051924 // regulation of calcium ion transport // inferred from electronic annotation /// 0051924 // regulation of calcium ion transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // inferred from direct assay /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // not recorded /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030288 // outer membrane-bounded periplasmic space // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // inferred from direct assay /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // not recorded /// 0016594 // glycine binding // inferred from direct assay /// 0030594 // neurotransmitter receptor activity // inferred from direct assay /// 0042165 // neurotransmitter binding // inferred from direct assay 1381041_at BF416665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416665 /DB_XREF=gi:11404654 /DB_XREF=UI-R-CA0-bku-d-09-0-UI.s1 /CLONE=UI-R-CA0-bku-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.63112.1 /TIER=ConsEnd /STK=2 /UG=Rn.63112 /UG_TITLE=ESTs BF416665 1381042_at AA956336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956336 /DB_XREF=gi:4238767 /DB_XREF=UI-R-E1-fj-b-10-0-UI.s1 /CLONE=UI-R-E1-fj-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.9619.1 /TIER=ConsEnd /STK=2 /UG=Rn.9619 /UG_TITLE=ESTs AA956336 Anaphase promoting complex subunit 10 Anapc10 361389 NM_001108445 0030071 // regulation of mitotic metaphase/anaphase transition // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070979 // protein K11-linked ubiquitination // inferred from electronic annotation /// 0070979 // protein K11-linked ubiquitination // not recorded 0005654 // nucleoplasm // not recorded /// 0005680 // anaphase-promoting complex // inferred from electronic annotation /// 0005680 // anaphase-promoting complex // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation 1381043_at AI639256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639256 /DB_XREF=gi:4700290 /DB_XREF=rx01019s /CLONE=rx01019 /FEA=EST /CNT=2 /TID=Rn.40672.1 /TIER=ConsEnd /STK=2 /UG=Rn.40672 /UG_TITLE=ESTs AI639256 1381044_at BI277137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277137 /DB_XREF=gi:14922727 /DB_XREF=UI-R-CY0-bxv-b-11-0-UI.s1 /CLONE=UI-R-CY0-bxv-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.50307.1 /TIER=ConsEnd /STK=2 /UG=Rn.50307 /UG_TITLE=ESTs BI277137 1381045_at BI276129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276129 /DB_XREF=gi:14920744 /DB_XREF=UI-R-CX0-bwz-d-09-0-UI.s1 /CLONE=UI-R-CX0-bwz-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.77539.1 /TIER=ConsEnd /STK=2 /UG=Rn.77539 /UG_TITLE=ESTs BI276129 1381046_at BG375603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375603 /DB_XREF=gi:13300075 /DB_XREF=UI-R-CS0-btd-c-01-0-UI.s1 /CLONE=UI-R-CS0-btd-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.21604.1 /TIER=ConsEnd /STK=2 /UG=Rn.21604 /UG_TITLE=ESTs BG375603 aspartate-beta-hydroxylase Asph 312981 NM_001098239 0007389 // pattern specification process // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0035108 // limb morphogenesis // not recorded /// 0042264 // peptidyl-aspartic acid hydroxylation // not recorded /// 0051480 // cytosolic calcium ion homeostasis // inferred from mutant phenotype /// 0060021 // palate development // not recorded /// 0060325 // face morphogenesis // not recorded 0016020 // membrane // inferred from electronic annotation 1381047_at BE097624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097624 /DB_XREF=gi:8488555 /DB_XREF=UI-R-BO1-apz-g-11-0-UI.s1 /CLONE=UI-R-BO1-apz-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.28493.1 /TIER=ConsEnd /STK=2 /UG=Rn.28493 /UG_TITLE=ESTs BE097624 1381048_at BF398435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398435 /DB_XREF=gi:11383425 /DB_XREF=UI-R-BS2-beo-g-12-0-UI.s1 /CLONE=UI-R-BS2-beo-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.49956.1 /TIER=ConsEnd /STK=2 /UG=Rn.49956 /UG_TITLE=ESTs BF398435 1381049_at BG375951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375951 /DB_XREF=gi:13300423 /DB_XREF=UI-R-CU0-bur-e-10-0-UI.s1 /CLONE=UI-R-CU0-bur-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.18300.1 /TIER=ConsEnd /STK=2 /UG=Rn.18300 /UG_TITLE=ESTs BG375951 zinc finger, FYVE domain containing 9 Zfyve9 313477 NM_001107952 0031901 // early endosome membrane // not recorded 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1381050_at AW251939 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251939 /DB_XREF=gi:6595530 /DB_XREF=UI-R-BJ0-adn-g-08-0-UI.s1 /CLONE=UI-R-BJ0-adn-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.44738.1 /TIER=ConsEnd /STK=2 /UG=Rn.44738 /UG_TITLE=ESTs, Moderately similar to T00054 hypothetical protein KIAA0415 (H.sapiens) AW251939 0005488 // binding // inferred from electronic annotation 1381051_at AW524545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524545 /DB_XREF=gi:7166930 /DB_XREF=UI-R-BO0-ahz-f-09-0-UI.s1 /CLONE=UI-R-BO0-ahz-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.45874.1 /TIER=ConsEnd /STK=2 /UG=Rn.45874 /UG_TITLE=ESTs AW524545 1381052_at AW528041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528041 /DB_XREF=gi:7170455 /DB_XREF=UI-R-BT1-akh-a-05-0-UI.s1 /CLONE=UI-R-BT1-akh-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.48518.1 /TIER=ConsEnd /STK=2 /UG=Rn.48518 /UG_TITLE=ESTs AW528041 1381053_at BF404772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404772 /DB_XREF=gi:11392747 /DB_XREF=UI-R-CA1-bid-d-11-0-UI.s1 /CLONE=UI-R-CA1-bid-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.59437.1 /TIER=ConsEnd /STK=2 /UG=Rn.59437 /UG_TITLE=ESTs BF404772 1381054_at BI275310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275310 /DB_XREF=gi:14887037 /DB_XREF=UI-R-CX0-bwu-a-06-0-UI.s1 /CLONE=UI-R-CX0-bwu-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.60608.1 /TIER=ConsEnd /STK=2 /UG=Rn.60608 /UG_TITLE=ESTs BI275310 ninein-like Ninl 311529 XM_001060198 /// XM_230778 0005829 // cytosol // not recorded 0005509 // calcium ion binding // inferred from electronic annotation 1381055_at BF415544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415544 /DB_XREF=gi:11403533 /DB_XREF=UI-R-CA1-bka-d-06-0-UI.s1 /CLONE=UI-R-CA1-bka-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.62736.1 /TIER=ConsEnd /STK=2 /UG=Rn.62736 /UG_TITLE=ESTs BF415544 1381056_at BI286045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286045 /DB_XREF=gi:14940303 /DB_XREF=UI-R-CX0s-ccu-h-02-0-UI.s1 /CLONE=UI-R-CX0s-ccu-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.66880.1 /TIER=ConsEnd /STK=2 /UG=Rn.66880 /UG_TITLE=ESTs BI286045 plakophilin 3 Pkp3 293619 NM_001106315 0030057 // desmosome // not recorded 0005488 // binding // inferred from electronic annotation 1381057_at AW526130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526130 /DB_XREF=gi:7168515 /DB_XREF=UI-R-BO1-aiz-e-08-0-UI.s1 /CLONE=UI-R-BO1-aiz-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.67784.1 /TIER=ConsEnd /STK=2 /UG=Rn.67784 /UG_TITLE=ESTs AW526130 1381058_at AI548492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548492 /DB_XREF=gi:4465980 /DB_XREF=UI-R-C3-to-a-06-0-UI.s1 /CLONE=UI-R-C3-to-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.18180.1 /TIER=ConsEnd /STK=2 /UG=Rn.18180 /UG_TITLE=ESTs AI548492 1381059_at AI044885 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044885 /DB_XREF=gi:3291704 /DB_XREF=UI-R-C1-kd-h-11-0-UI.s1 /CLONE=UI-R-C1-kd-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.20811.1 /TIER=ConsEnd /STK=2 /UG=Rn.20811 /UG_TITLE=ESTs AI044885 1381060_at AI113313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113313 /DB_XREF=gi:3513262 /DB_XREF=UI-R-C2p-nr-d-10-0-UI.s1 /CLONE=UI-R-C2p-nr-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.23652.1 /TIER=ConsEnd /STK=2 /UG=Rn.23652 /UG_TITLE=ESTs AI113313 1381061_at AI058949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058949 /DB_XREF=gi:3332726 /DB_XREF=UI-R-C1-lr-d-07-0-UI.s1 /CLONE=UI-R-C1-lr-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.33409.1 /TIER=ConsEnd /STK=2 /UG=Rn.33409 /UG_TITLE=ESTs AI058949 1381062_at AW530948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530948 /DB_XREF=gi:7173362 /DB_XREF=UI-R-C4-alf-f-09-0-UI.s1 /CLONE=UI-R-C4-alf-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.47586.1 /TIER=ConsEnd /STK=2 /UG=Rn.47586 /UG_TITLE=ESTs, Highly similar to ACE RAT ANGIOTENSIN-CONVERTING ENZYME, SOMATIC ISOFORM PRECURSOR (R.norvegicus) AW530948 hypothetical protein LOC100365462 LOC100365462 100365462 XM_002724644 1381063_at BE103485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103485 /DB_XREF=gi:8495584 /DB_XREF=UI-R-BX0-arc-f-06-0-UI.s1 /CLONE=UI-R-BX0-arc-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.49179.1 /TIER=ConsEnd /STK=2 /UG=Rn.49179 /UG_TITLE=ESTs, Weakly similar to B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2,5-Dideoxy-Adenosine 3- Triphosphate And Mg (R.norvegicus) BE103485 adenylate cyclase 9 LOC100362008 100362008 XM_002727705 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation 1381064_at AI137604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137604 /DB_XREF=gi:3638381 /DB_XREF=UI-R-C0-ho-g-10-0-UI.s1 /CLONE=UI-R-C0-ho-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.23097.1 /TIER=ConsEnd /STK=2 /UG=Rn.23097 /UG_TITLE=ESTs AI137604 1381065_at BG379401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379401 /DB_XREF=gi:13303873 /DB_XREF=UI-R-CS0-btg-d-11-0-UI.s1 /CLONE=UI-R-CS0-btg-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.45149.1 /TIER=ConsEnd /STK=2 /UG=Rn.45149 /UG_TITLE=ESTs BG379401 1381066_at BF403440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403440 /DB_XREF=gi:11391415 /DB_XREF=UI-R-CA1-biy-l-01-0-UI.s1 /CLONE=UI-R-CA1-biy-l-01-0-UI /FEA=EST /CNT=2 /TID=Rn.60195.1 /TIER=ConsEnd /STK=2 /UG=Rn.60195 /UG_TITLE=ESTs BF403440 1381067_at BF403167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403167 /DB_XREF=gi:11391142 /DB_XREF=UI-R-CA0-bhs-d-10-0-UI.s1 /CLONE=UI-R-CA0-bhs-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.60211.1 /TIER=ConsEnd /STK=2 /UG=Rn.60211 /UG_TITLE=ESTs BF403167 sulfiredoxin 1 homolog (S. cerevisiae) Srxn1 296271 NM_001047858 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0008152 // metabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0016667 // oxidoreductase activity, acting on a sulfur group of donors // inferred from electronic annotation /// 0016667 // oxidoreductase activity, acting on a sulfur group of donors // not recorded /// 0032542 // sulfiredoxin activity // inferred from electronic annotation 1381068_at BF391448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391448 /DB_XREF=gi:11376301 /DB_XREF=UI-R-CA1-bcx-e-11-0-UI.s1 /CLONE=UI-R-CA1-bcx-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.62038.1 /TIER=ConsEnd /STK=2 /UG=Rn.62038 /UG_TITLE=ESTs BF391448 similar to CG18661-PA RGD1307155 302998 NM_001037188 1381069_at BF413433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413433 /DB_XREF=gi:11401422 /DB_XREF=UI-R-BT1-bob-a-11-0-UI.s1 /CLONE=UI-R-BT1-bob-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.62341.1 /TIER=ConsEnd /STK=2 /UG=Rn.62341 /UG_TITLE=ESTs, Moderately similar to B48205 All-1 protein -GTE form - mouse (M.musculus) BF413433 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0035097 // histone methyltransferase complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042800 // histone methyltransferase activity (H3-K4 specific) // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1381070_at AI233106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233106 /DB_XREF=gi:3816986 /DB_XREF=EST229794 /CLONE=RKICK86 /FEA=EST /CNT=2 /TID=Rn.23906.1 /TIER=ConsEnd /STK=2 /UG=Rn.23906 /UG_TITLE=ESTs AI233106 thymic stromal lymphopoietin Tslp 688621 XM_001067649 /// XM_002725343 0005125 // cytokine activity // not recorded /// 0005515 // protein binding // not recorded 1381071_at AI112096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112096 /DB_XREF=gi:3512045 /DB_XREF=UI-R-Y0-mo-d-04-0-UI.s1 /CLONE=UI-R-Y0-mo-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.26717.1 /TIER=ConsEnd /STK=2 /UG=Rn.26717 /UG_TITLE=ESTs AI112096 1381072_at AW520848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520848 /DB_XREF=gi:7163226 /DB_XREF=UI-R-BJ0p-age-b-10-0-UI.s1 /CLONE=UI-R-BJ0p-age-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.38300.1 /TIER=ConsEnd /STK=2 /UG=Rn.38300 /UG_TITLE=ESTs AW520848 1381073_at BF418395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418395 /DB_XREF=gi:11406384 /DB_XREF=UI-R-BJ2-box-h-06-0-UI.s1 /CLONE=UI-R-BJ2-box-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.61280.1 /TIER=ConsEnd /STK=2 /UG=Rn.61280 /UG_TITLE=ESTs, Weakly similar to JC5909 AE33 protein - fruit fly (D.melanogaster) BF418395 sprouty-related, EVH1 domain containing 3 Spred3 308478 NM_001173344 /// XM_001078570 /// XM_002725555 /// XM_002728723 /// XM_218461 0000188 // inactivation of MAPK activity // not recorded /// 0000188 // inactivation of MAPK activity // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009966 // regulation of signal transduction // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005173 // stem cell factor receptor binding // not recorded 1381074_at AW527986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527986 /DB_XREF=gi:7170400 /DB_XREF=UI-R-BT1-akg-d-07-0-UI.s1 /CLONE=UI-R-BT1-akg-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.28757.1 /TIER=ConsEnd /STK=2 /UG=Rn.28757 /UG_TITLE=ESTs AW527986 1381075_at AA956937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956937 /DB_XREF=gi:4239411 /DB_XREF=UI-R-E1-fl-b-12-0-UI.s1 /CLONE=UI-R-E1-fl-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.32887.1 /TIER=ConsEnd /STK=2 /UG=Rn.32887 /UG_TITLE=ESTs AA956937 1381076_at BF391525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391525 /DB_XREF=gi:11376342 /DB_XREF=UI-R-CA1-bcs-a-08-0-UI.s1 /CLONE=UI-R-CA1-bcs-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.57521.1 /TIER=ConsEnd /STK=2 /UG=Rn.57521 /UG_TITLE=ESTs BF391525 forkhead box K2 Foxk2 303753 NM_001107075 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0000287 // magnesium ion binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1381077_at AA996843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996843 /DB_XREF=gi:4280607 /DB_XREF=UI-R-C0-hg-f-03-0-UI.s1 /CLONE=UI-R-C0-hg-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.12430.1 /TIER=ConsEnd /STK=2 /UG=Rn.12430 /UG_TITLE=ESTs AA996843 1381078_at BF409999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409999 /DB_XREF=gi:11397974 /DB_XREF=UI-R-CA0-bjs-c-11-0-UI.s1 /CLONE=UI-R-CA0-bjs-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.21619.1 /TIER=ConsEnd /STK=2 /UG=Rn.21619 /UG_TITLE=ESTs BF409999 1381079_at BF411725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411725 /DB_XREF=gi:11399714 /DB_XREF=UI-R-BT1-bmq-b-10-0-UI.s1 /CLONE=UI-R-BT1-bmq-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.26595.1 /TIER=ConsEnd /STK=2 /UG=Rn.26595 /UG_TITLE=ESTs BF411725 basonuclin 1 Bnc1 365299 NM_001108916 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1381080_at AI169081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169081 /DB_XREF=gi:3705389 /DB_XREF=EST214911 /CLONE=RKIBM82 /FEA=EST /CNT=2 /TID=Rn.33700.1 /TIER=ConsEnd /STK=2 /UG=Rn.33700 /UG_TITLE=ESTs AI169081 1381081_at AW523873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523873 /DB_XREF=gi:7166258 /DB_XREF=UI-R-BO0-aie-a-04-0-UI.s1 /CLONE=UI-R-BO0-aie-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.45735.1 /TIER=ConsEnd /STK=2 /UG=Rn.45735 /UG_TITLE=ESTs AW523873 1381082_at BF398539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398539 /DB_XREF=gi:11383532 /DB_XREF=UI-R-BS2-beq-a-01-0-UI.s1 /CLONE=UI-R-BS2-beq-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.59107.1 /TIER=ConsEnd /STK=2 /UG=Rn.59107 /UG_TITLE=ESTs BF398539 mCG54481-like LOC100363841 100363841 XM_002725591 1381083_at BF419663 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419663 /DB_XREF=gi:11407652 /DB_XREF=UI-R-CA0-bpe-g-06-0-UI.s1 /CLONE=UI-R-CA0-bpe-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.63598.1 /TIER=ConsEnd /STK=2 /UG=Rn.63598 /UG_TITLE=ESTs BF419663 1381084_at AA964619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964619 /DB_XREF=gi:4279493 /DB_XREF=UI-R-C0-gv-d-04-0-UI.s1 /CLONE=UI-R-C0-gv-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.18658.3 /TIER=ConsEnd /STK=2 /UG=Rn.18658 /UG_TITLE=ESTs, Highly similar to protein p84 (H.sapiens) AA964619 1381085_at AI058428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058428 /DB_XREF=gi:3332205 /DB_XREF=UI-R-C1-kn-c-12-0-UI.s1 /CLONE=UI-R-C1-kn-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.18875.1 /TIER=ConsEnd /STK=2 /UG=Rn.18875 /UG_TITLE=ESTs AI058428 1381086_at AW523816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523816 /DB_XREF=gi:7166201 /DB_XREF=UI-R-BJ0p-aij-d-06-0-UI.s1 /CLONE=UI-R-BJ0p-aij-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.26769.1 /TIER=ConsEnd /STK=2 /UG=Rn.26769 /UG_TITLE=ESTs AW523816 1381087_at AW253893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253893 /DB_XREF=gi:6597484 /DB_XREF=UI-R-BJ0-aec-f-03-0-UI.s1 /CLONE=UI-R-BJ0-aec-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.44783.1 /TIER=ConsEnd /STK=2 /UG=Rn.44783 /UG_TITLE=ESTs AW253893 1381088_at BE096686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096686 /DB_XREF=gi:8487576 /DB_XREF=UI-R-BU0-api-f-06-0-UI.s1 /CLONE=UI-R-BU0-api-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.48962.1 /TIER=ConsEnd /STK=2 /UG=Rn.48962 /UG_TITLE=ESTs BE096686 podocan Podn 313483 0005515 // protein binding // inferred from electronic annotation /// 0032934 // sterol binding // inferred from electronic annotation 1381089_at BE114458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114458 /DB_XREF=gi:8506563 /DB_XREF=UI-R-CA0-axm-d-11-0-UI.s1 /CLONE=UI-R-CA0-axm-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.49161.1 /TIER=ConsEnd /STK=2 /UG=Rn.49161 /UG_TITLE=ESTs BE114458 1381090_at BE096310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096310 /DB_XREF=gi:8487241 /DB_XREF=UI-R-BU0-ape-e-10-0-UI.s1 /CLONE=UI-R-BU0-ape-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.49426.1 /TIER=ConsEnd /STK=2 /UG=Rn.49426 /UG_TITLE=ESTs BE096310 1381091_at BE101556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101556 /DB_XREF=gi:8493654 /DB_XREF=UI-R-BO1-apr-c-12-0-UI.s1 /CLONE=UI-R-BO1-apr-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.50076.1 /TIER=ConsEnd /STK=2 /UG=Rn.50076 /UG_TITLE=ESTs BE101556 1381092_at BF391565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391565 /DB_XREF=gi:11376418 /DB_XREF=UI-R-CA1-bcs-h-07-0-UI.s1 /CLONE=UI-R-CA1-bcs-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.57552.1 /TIER=ConsEnd /STK=2 /UG=Rn.57552 /UG_TITLE=ESTs BF391565 1381093_at BF394832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394832 /DB_XREF=gi:11379790 /DB_XREF=UI-R-CA0-bfz-e-01-0-UI.s1 /CLONE=UI-R-CA0-bfz-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.58362.1 /TIER=ConsEnd /STK=2 /UG=Rn.58362 /UG_TITLE=ESTs BF394832 1381094_at BG376156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376156 /DB_XREF=gi:13300628 /DB_XREF=UI-R-CT0-bun-b-08-0-UI.s1 /CLONE=UI-R-CT0-bun-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.66369.1 /TIER=ConsEnd /STK=2 /UG=Rn.66369 /UG_TITLE=ESTs BG376156 1381095_at BI302849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302849 /DB_XREF=gi:14979129 /DB_XREF=UI-R-DQ0-ciz-n-10-0-UI.s1 /CLONE=UI-R-DQ0-ciz-n-10-0-UI /FEA=EST /CNT=2 /TID=Rn.76022.1 /TIER=ConsEnd /STK=2 /UG=Rn.76022 /UG_TITLE=ESTs BI302849 1381096_at BM385837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385837 /DB_XREF=gi:18185890 /DB_XREF=UI-R-DM1-cke-i-22-0-UI.s1 /CLONE=UI-R-DM1-cke-i-22-0-UI /FEA=EST /CNT=2 /TID=Rn.81529.1 /TIER=ConsEnd /STK=2 /UG=Rn.81529 /UG_TITLE=ESTs BM385837 1381097_at AI030890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030890 /DB_XREF=gi:3248716 /DB_XREF=UI-R-C0-jf-a-09-0-UI.s1 /CLONE=UI-R-C0-jf-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.15164.1 /TIER=ConsEnd /STK=2 /UG=Rn.15164 /UG_TITLE=ESTs AI030890 1381098_at BM384427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384427 /DB_XREF=gi:18184480 /DB_XREF=UI-R-CN1-cjn-i-20-0-UI.s1 /CLONE=UI-R-CN1-cjn-i-20-0-UI /FEA=EST /CNT=2 /TID=Rn.27803.1 /TIER=ConsEnd /STK=2 /UG=Rn.27803 /UG_TITLE=ESTs BM384427 similar to B0511.12 LOC690217 690217 XM_002726706 /// XM_002729652 0016021 // integral to membrane // inferred from electronic annotation 1381099_at AI236843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236843 /DB_XREF=gi:3830349 /DB_XREF=EST233405 /CLONE=ROVDL25 /FEA=EST /CNT=2 /TID=Rn.39296.1 /TIER=ConsEnd /STK=2 /UG=Rn.39296 /UG_TITLE=ESTs AI236843 1381100_at BE108751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108751 /DB_XREF=gi:8500856 /DB_XREF=UI-R-BS1-ayy-a-09-0-UI.s1 /CLONE=UI-R-BS1-ayy-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.48960.1 /TIER=ConsEnd /STK=2 /UG=Rn.48960 /UG_TITLE=ESTs BE108751 1381101_at BE117473 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117473 /DB_XREF=gi:8509578 /DB_XREF=UI-R-BS1-ayo-c-05-0-UI.s1 /CLONE=UI-R-BS1-ayo-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.50747.1 /TIER=ConsEnd /STK=2 /UG=Rn.50747 /UG_TITLE=ESTs BE117473 1381102_at BF415341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415341 /DB_XREF=gi:11403330 /DB_XREF=UI-R-CA0-bpc-g-06-0-UI.s1 /CLONE=UI-R-CA0-bpc-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.62674.1 /TIER=ConsEnd /STK=2 /UG=Rn.62674 /UG_TITLE=ESTs BF415341 1381103_a_at AA996485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996485 /DB_XREF=gi:4280252 /DB_XREF=UI-R-C0-hi-h-11-0-UI.s1 /CLONE=UI-R-C0-hi-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.13057.3 /TIER=ConsEnd /STK=2 /UG=Rn.13057 /UG_TITLE=ESTs, Moderately similar to PC4211 hepatocellular carcinoma complicating hemochromatosis protein (H.sapiens) AA996485 SRR1 domain containing Srrd 288717 XM_001080556 /// XM_213799 1381104_at AI145877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145877 /DB_XREF=gi:3667676 /DB_XREF=UI-R-BT0-qg-b-03-0-UI.s1 /CLONE=UI-R-BT0-qg-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.28650.1 /TIER=ConsEnd /STK=2 /UG=Rn.28650 /UG_TITLE=ESTs AI145877 1381105_at AW529713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529713 /DB_XREF=gi:7172127 /DB_XREF=UI-R-BU0-amr-e-01-0-UI.s1 /CLONE=UI-R-BU0-amr-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.47288.1 /TIER=ConsEnd /STK=2 /UG=Rn.47288 /UG_TITLE=ESTs AW529713 1381106_at BE108055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108055 /DB_XREF=gi:8500160 /DB_XREF=UI-R-CA0-awz-h-06-0-UI.s1 /CLONE=UI-R-CA0-awz-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.51397.1 /TIER=ConsEnd /STK=2 /UG=Rn.51397 /UG_TITLE=ESTs BE108055 1381107_at BF387958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387958 /DB_XREF=gi:11372782 /DB_XREF=UI-R-CA1-bbw-f-10-0-UI.s1 /CLONE=UI-R-CA1-bbw-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.56644.1 /TIER=ConsEnd /STK=2 /UG=Rn.56644 /UG_TITLE=ESTs BF387958 1381108_at BF387399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387399 /DB_XREF=gi:11372223 /DB_XREF=UI-R-CA1-bbm-a-05-0-UI.s1 /CLONE=UI-R-CA1-bbm-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.59456.1 /TIER=ConsEnd /STK=2 /UG=Rn.59456 /UG_TITLE=ESTs BF387399 dim gamma-tubulin 1-like /// similar to hypothetical protein FLJ20436 LOC100364875 /// RGD1303127 100364875 /// 300206 NM_001004244 /// XM_002724947 1381109_at BF412395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412395 /DB_XREF=gi:11400384 /DB_XREF=UI-R-BT1-bna-f-05-0-UI.s1 /CLONE=UI-R-BT1-bna-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.62075.1 /TIER=ConsEnd /STK=2 /UG=Rn.62075 /UG_TITLE=ESTs BF412395 1381110_at BE105924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105924 /DB_XREF=gi:8498026 /DB_XREF=UI-R-BO1-asj-g-09-0-UI.s1 /CLONE=UI-R-BO1-asj-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.62089.1 /TIER=ConsEnd /STK=2 /UG=Rn.62089 /UG_TITLE=ESTs BE105924 1381111_at BI275744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275744 /DB_XREF=gi:14919958 /DB_XREF=UI-R-CX0-bxg-b-08-0-UI.s1 /CLONE=UI-R-CX0-bxg-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.77503.1 /TIER=ConsEnd /STK=2 /UG=Rn.77503 /UG_TITLE=ESTs BI275744 1381112_at AI555805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555805 /DB_XREF=gi:4488168 /DB_XREF=UI-R-C2p-qz-e-04-0-UI.s1 /CLONE=UI-R-C2p-qz-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.38201.1 /TIER=ConsEnd /STK=2 /UG=Rn.38201 /UG_TITLE=ESTs AI555805 1381113_at BE102952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102952 /DB_XREF=gi:8495051 /DB_XREF=UI-R-BT1-aqu-d-11-0-UI.s1 /CLONE=UI-R-BT1-aqu-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.41632.1 /TIER=ConsEnd /STK=2 /UG=Rn.41632 /UG_TITLE=ESTs BE102952 1381114_at BF387271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387271 /DB_XREF=gi:11372095 /DB_XREF=UI-R-CA1-bbl-e-08-0-UI.s1 /CLONE=UI-R-CA1-bbl-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.46644.1 /TIER=ConsEnd /STK=2 /UG=Rn.46644 /UG_TITLE=ESTs, Weakly similar to T33304 hypothetical protein R01B10.5 - Caenorhabditis elegans (C.elegans) BF387271 similar to RIKEN cDNA 4931417E11 RGD1562515 500204 NM_001109242 1381115_at AW536039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW536039 /DB_XREF=gi:7178453 /DB_XREF=UI-R-BS0-aog-g-06-0-UI.s1 /CLONE=UI-R-BS0-aog-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.50794.1 /TIER=ConsEnd /STK=2 /UG=Rn.50794 /UG_TITLE=ESTs AW536039 1381116_at BF413592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413592 /DB_XREF=gi:11401581 /DB_XREF=UI-R-CA0-bog-b-01-0-UI.s1 /CLONE=UI-R-CA0-bog-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.62395.1 /TIER=ConsEnd /STK=2 /UG=Rn.62395 /UG_TITLE=ESTs BF413592 1381117_at BF388944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388944 /DB_XREF=gi:11373811 /DB_XREF=UI-R-BS2-bdk-d-08-0-UI.s1 /CLONE=UI-R-BS2-bdk-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.32495.1 /TIER=ConsEnd /STK=2 /UG=Rn.32495 /UG_TITLE=ESTs BF388944 1381118_at AW526652 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526652 /DB_XREF=gi:7169066 /DB_XREF=UI-R-BO1-ajd-d-12-0-UI.s1 /CLONE=UI-R-BO1-ajd-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.46278.1 /TIER=ConsEnd /STK=2 /UG=Rn.46278 /UG_TITLE=ESTs, Weakly similar to T15332 hypothetical protein B0336.5 - Caenorhabditis elegans (C.elegans) AW526652 similar to RIKEN cDNA 2700007P21 RGD1311463 311279 NM_001014045 1381119_at BM387763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387763 /DB_XREF=gi:18187816 /DB_XREF=UI-R-CN1-cjk-c-14-0-UI.s1 /CLONE=UI-R-CN1-cjk-c-14-0-UI /FEA=EST /CNT=2 /TID=Rn.81253.1 /TIER=ConsEnd /STK=2 /UG=Rn.81253 /UG_TITLE=ESTs BM387763 tetratricopeptide repeat domain 1 Ttc1 287208 NM_001005529 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1381120_at AI071248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071248 /DB_XREF=gi:3397463 /DB_XREF=UI-R-C2-nb-e-02-0-UI.s1 /CLONE=UI-R-C2-nb-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.20483.2 /TIER=ConsEnd /STK=2 /UG=Rn.20483 /UG_TITLE=ESTs AI071248 inversin Invs 313228 NM_001107932 0001822 // kidney development // not recorded /// 0009791 // post-embryonic development // not recorded /// 0031016 // pancreas development // not recorded /// 0048513 // organ development // not recorded /// 0060971 // embryonic heart tube left/right pattern formation // not recorded 1381121_at AW533010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533010 /DB_XREF=gi:7175424 /DB_XREF=UI-R-BU0-amy-g-04-0-UI.s1 /CLONE=UI-R-BU0-amy-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.44962.1 /TIER=ConsEnd /STK=2 /UG=Rn.44962 /UG_TITLE=ESTs, Moderately similar to JC5547 basic helix-loop-helix factor DEC1 (H.sapiens) AW533010 1381122_at BE098226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098226 /DB_XREF=gi:8490089 /DB_XREF=UI-R-BJ1-asz-c-08-0-UI.s1 /CLONE=UI-R-BJ1-asz-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.49773.1 /TIER=ConsEnd /STK=2 /UG=Rn.49773 /UG_TITLE=ESTs BE098226 1381123_at BE113044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113044 /DB_XREF=gi:8505149 /DB_XREF=UI-R-BJ1-awf-g-02-0-UI.s1 /CLONE=UI-R-BJ1-awf-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.52148.1 /TIER=ConsEnd /STK=2 /UG=Rn.52148 /UG_TITLE=ESTs BE113044 1381124_at AA819672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819672 /DB_XREF=gi:4228744 /DB_XREF=UI-R-A0-bh-b-04-0-UI.s1 /CLONE=UI-R-A0-bh-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.16797.1 /TIER=ConsEnd /STK=2 /UG=Rn.16797 /UG_TITLE=ESTs AA819672 1381125_at AI229420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229420 /DB_XREF=gi:3813307 /DB_XREF=EST226115 /CLONE=REMCG12 /FEA=EST /CNT=2 /TID=Rn.24444.1 /TIER=ConsEnd /STK=2 /UG=Rn.24444 /UG_TITLE=ESTs AI229420 1381126_at BE099652 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099652 /DB_XREF=gi:8491531 /DB_XREF=UI-R-BJ1-atp-g-07-0-UI.s1 /CLONE=UI-R-BJ1-atp-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.40795.2 /TIER=ConsEnd /STK=2 /UG=Rn.40795 /UG_TITLE=ESTs BE099652 SLIT-ROBO Rho GTPase activating protein 2 Srgap2 360840 NM_001134958 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded 0005515 // protein binding // not recorded 1381127_at AI712728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712728 /DB_XREF=gi:5016528 /DB_XREF=UI-R-AF1-aau-g-09-0-UI.s1 /CLONE=UI-R-AF1-aau-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.41121.1 /TIER=ConsEnd /STK=2 /UG=Rn.41121 /UG_TITLE=ESTs AI712728 1381128_at BE097136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097136 /DB_XREF=gi:8488067 /DB_XREF=UI-R-BO1-apt-f-05-0-UI.s1 /CLONE=UI-R-BO1-apt-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.49546.1 /TIER=ConsEnd /STK=2 /UG=Rn.49546 /UG_TITLE=ESTs BE097136 1381129_at BF392367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392367 /DB_XREF=gi:11377224 /DB_XREF=UI-R-CA0-bfi-c-10-0-UI.s1 /CLONE=UI-R-CA0-bfi-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.61913.1 /TIER=ConsEnd /STK=2 /UG=Rn.61913 /UG_TITLE=ESTs BF392367 1381130_at BF412056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412056 /DB_XREF=gi:11400045 /DB_XREF=UI-R-BT1-bmy-a-11-0-UI.s1 /CLONE=UI-R-BT1-bmy-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.77418.1 /TIER=ConsEnd /STK=2 /UG=Rn.77418 /UG_TITLE=ESTs BF412056 minichromosome maintenance complex component 8 Mcm8 296178 NM_001106514 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded 0005654 // nucleoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1381131_at AI171441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171441 /DB_XREF=gi:4134626 /DB_XREF=EST217402 /CLONE=RMUBK94 /FEA=EST /CNT=2 /TID=Rn.31236.1 /TIER=ConsEnd /STK=2 /UG=Rn.31236 /UG_TITLE=ESTs AI171441 1381132_at AI501937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501937 /DB_XREF=gi:4399788 /DB_XREF=UI-R-C0-iw-c-03-0-UI.s1 /CLONE=UI-R-C0-iw-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.36638.1 /TIER=ConsEnd /STK=2 /UG=Rn.36638 /UG_TITLE=ESTs AI501937 1381133_at BF409213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409213 /DB_XREF=gi:11397188 /DB_XREF=UI-R-BT1-bkn-d-04-0-UI.s1 /CLONE=UI-R-BT1-bkn-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.45473.1 /TIER=ConsEnd /STK=2 /UG=Rn.45473 /UG_TITLE=ESTs BF409213 1381134_at BE108785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108785 /DB_XREF=gi:8500890 /DB_XREF=UI-R-BS1-ayy-d-07-0-UI.s1 /CLONE=UI-R-BS1-ayy-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.51616.1 /TIER=ConsEnd /STK=2 /UG=Rn.51616 /UG_TITLE=ESTs BE108785 1381135_at AW533560 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533560 /DB_XREF=gi:7175974 /DB_XREF=UI-R-BU0-and-d-02-0-UI.s1 /CLONE=UI-R-BU0-and-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.26761.1 /TIER=ConsEnd /STK=2 /UG=Rn.26761 /UG_TITLE=ESTs AW533560 1381136_at BE095712 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095712 /DB_XREF=gi:8486643 /DB_XREF=UI-R-BU0-aoy-d-08-0-UI.s1 /CLONE=UI-R-BU0-aoy-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.49352.1 /TIER=ConsEnd /STK=2 /UG=Rn.49352 /UG_TITLE=ESTs, Weakly similar to A49185 interphotoreceptor retinoid-binding protein - rat (R.norvegicus) BE095712 retinol binding protein 3, interstitial Rbp3 24711 NM_001191832 /// XM_001060185 /// XM_341400 0006508 // proteolysis // inferred from electronic annotation /// 0042462 // eye photoreceptor cell development // non-traceable author statement 0004872 // receptor activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation 1381137_at BE112525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112525 /DB_XREF=gi:8504630 /DB_XREF=UI-R-BJ1-avi-f-12-0-UI.s1 /CLONE=UI-R-BJ1-avi-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.52080.1 /TIER=ConsEnd /STK=2 /UG=Rn.52080 /UG_TITLE=ESTs BE112525 DnaJ (Hsp40) homolog, subfamily C, member 7 Dnajc7 303536 NM_213625 0070389 // chaperone cofactor-dependent protein refolding // inferred from electronic annotation /// 0070389 // chaperone cofactor-dependent protein refolding // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005488 // binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // not recorded 1381138_at BF414118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414118 /DB_XREF=gi:11402107 /DB_XREF=UI-R-BJ2-bom-e-11-0-UI.s1 /CLONE=UI-R-BJ2-bom-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.62509.1 /TIER=ConsEnd /STK=2 /UG=Rn.62509 /UG_TITLE=ESTs BF414118 1381139_at BM387383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387383 /DB_XREF=gi:18187436 /DB_XREF=UI-R-CN1-cjj-i-23-0-UI.s1 /CLONE=UI-R-CN1-cjj-i-23-0-UI /FEA=EST /CNT=2 /TID=Rn.68932.1 /TIER=ConsEnd /STK=2 /UG=Rn.68932 /UG_TITLE=ESTs BM387383 1381140_at BF398056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398056 /DB_XREF=gi:11383041 /DB_XREF=UI-R-BS2-beg-g-07-0-UI.s1 /CLONE=UI-R-BS2-beg-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.70843.1 /TIER=ConsEnd /STK=2 /UG=Rn.70843 /UG_TITLE=ESTs, Moderately similar to T14789 hypothetical protein DKFZp586L0724.1 (H.sapiens) BF398056 1381141_at BF396613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396613 /DB_XREF=gi:11381588 /DB_XREF=UI-R-BS2-bea-b-07-0-UI.s1 /CLONE=UI-R-BS2-bea-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.32428.1 /TIER=ConsEnd /STK=2 /UG=Rn.32428 /UG_TITLE=ESTs BF396613 1381142_at AI408245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408245 /DB_XREF=gi:4251749 /DB_XREF=EST236535 /CLONE=ROVET55 /FEA=EST /CNT=2 /TID=Rn.35009.1 /TIER=ConsEnd /STK=2 /UG=Rn.35009 /UG_TITLE=ESTs AI408245 1381143_at AI029836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029836 /DB_XREF=gi:4301316 /DB_XREF=UI-R-C0-jn-g-06-0-UI.s1 /CLONE=UI-R-C0-jn-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.42159.1 /TIER=ConsEnd /STK=2 /UG=Rn.42159 /UG_TITLE=ESTs AI029836 1381144_at AW524106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524106 /DB_XREF=gi:7166491 /DB_XREF=UI-R-BO0-ahr-e-12-0-UI.s1 /CLONE=UI-R-BO0-ahr-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.45775.1 /TIER=ConsEnd /STK=2 /UG=Rn.45775 /UG_TITLE=ESTs AW524106 inositol monophosphatase domain containing 1 Impad1 312952 NM_001008772 /// XM_001069864 /// XM_575759 0001501 // skeletal system development // not recorded /// 0001958 // endochondral ossification // not recorded /// 0002063 // chondrocyte development // not recorded /// 0009791 // post-embryonic development // not recorded /// 0016311 // dephosphorylation // not recorded /// 0030204 // chondroitin sulfate metabolic process // not recorded /// 0042733 // embryonic digit morphogenesis // not recorded 0005794 // Golgi apparatus // not recorded 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0008254 // 3'-nucleotidase activity // not recorded 1381145_at BE112469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112469 /DB_XREF=gi:8504574 /DB_XREF=UI-R-BJ1-avi-a-09-0-UI.s1 /CLONE=UI-R-BJ1-avi-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.52074.1 /TIER=ConsEnd /STK=2 /UG=Rn.52074 /UG_TITLE=ESTs BE112469 1381146_at AW434387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434387 /DB_XREF=gi:6965694 /DB_XREF=UI-R-BJ0p-afl-e-10-0-UI.s1 /CLONE=UI-R-BJ0p-afl-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.54301.1 /TIER=ConsEnd /STK=2 /UG=Rn.54301 /UG_TITLE=ESTs AW434387 1381147_at BF409065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409065 /DB_XREF=gi:11397040 /DB_XREF=UI-R-BT1-bkl-f-01-0-UI.s1 /CLONE=UI-R-BT1-bkl-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.61233.1 /TIER=ConsEnd /STK=2 /UG=Rn.61233 /UG_TITLE=ESTs BF409065 1381148_at BF410261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410261 /DB_XREF=gi:11398236 /DB_XREF=UI-R-CA1-bjv-d-06-0-UI.s1 /CLONE=UI-R-CA1-bjv-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.61636.1 /TIER=ConsEnd /STK=2 /UG=Rn.61636 /UG_TITLE=ESTs BF410261 1381149_at BI293484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293484 /DB_XREF=gi:14955022 /DB_XREF=UI-R-DK0-cdr-a-06-0-UI.s1 /CLONE=UI-R-DK0-cdr-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.56934.1 /TIER=ConsEnd /STK=2 /UG=Rn.56934 /UG_TITLE=ESTs BI293484 1381150_at BF410638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410638 /DB_XREF=gi:11398571 /DB_XREF=UI-R-CA0-bma-f-01-0-UI.s1 /CLONE=UI-R-CA0-bma-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.61754.1 /TIER=ConsEnd /STK=2 /UG=Rn.61754 /UG_TITLE=ESTs, Weakly similar to S21976 probable RNA-directed DNA polymerase (R.norvegicus) BF410638 1381151_at BF386697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386697 /DB_XREF=gi:11371521 /DB_XREF=UI-R-CA1-bbg-d-09-0-UI.s1 /CLONE=UI-R-CA1-bbg-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.63290.1 /TIER=ConsEnd /STK=2 /UG=Rn.63290 /UG_TITLE=ESTs BF386697 1381152_at BF387456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387456 /DB_XREF=gi:11372280 /DB_XREF=UI-R-CA1-bbm-f-06-0-UI.s1 /CLONE=UI-R-CA1-bbm-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.63653.1 /TIER=ConsEnd /STK=2 /UG=Rn.63653 /UG_TITLE=ESTs BF387456 methyltransferase like 11A Mettl11a 362103 NM_001025019 0007051 // spindle organization // inferred from sequence or structural similarity /// 0007059 // chromosome segregation // inferred from sequence or structural similarity /// 0018016 // N-terminal peptidyl-proline dimethylation // inferred from sequence or structural similarity /// 0035572 // N-terminal peptidyl-serine dimethylation // inferred from sequence or structural similarity /// 0035573 // N-terminal peptidyl-serine trimethylation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008276 // protein methyltransferase activity // inferred from sequence or structural similarity /// 0016740 // transferase activity // inferred from electronic annotation 1381153_at BF405492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405492 /DB_XREF=gi:11393467 /DB_XREF=UI-R-CA1-biu-a-06-0-UI.s1 /CLONE=UI-R-CA1-biu-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.41255.1 /TIER=ConsEnd /STK=2 /UG=Rn.41255 /UG_TITLE=ESTs BF405492 anaphase promoting complex subunit 4 Anapc4 305420 NM_001107220 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070979 // protein K11-linked ubiquitination // not recorded 0005654 // nucleoplasm // not recorded /// 0005680 // anaphase-promoting complex // not recorded /// 0005829 // cytosol // not recorded 1381154_at BF403058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403058 /DB_XREF=gi:11391038 /DB_XREF=UI-R-CA0-biy-d-08-0-UI.s1 /CLONE=UI-R-CA0-biy-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.57408.1 /TIER=ConsEnd /STK=2 /UG=Rn.57408 /UG_TITLE=ESTs BF403058 1381155_at BF406620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406620 /DB_XREF=gi:11394595 /DB_XREF=UI-R-BJ2-bpv-b-12-0-UI.s1 /CLONE=UI-R-BJ2-bpv-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.60987.1 /TIER=ConsEnd /STK=2 /UG=Rn.60987 /UG_TITLE=ESTs BF406620 1381156_at BF387379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387379 /DB_XREF=gi:11372203 /DB_XREF=UI-R-CA1-bbr-g-05-0-UI.s1 /CLONE=UI-R-CA1-bbr-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.63647.1 /TIER=ConsEnd /STK=2 /UG=Rn.63647 /UG_TITLE=ESTs BF387379 1381157_at BF396928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396928 /DB_XREF=gi:11381911 /DB_XREF=UI-R-BS2-bew-g-07-0-UI.s1 /CLONE=UI-R-BS2-bew-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.16169.1 /TIER=ConsEnd /STK=2 /UG=Rn.16169 /UG_TITLE=ESTs BF396928 1381158_at AI101556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101556 /DB_XREF=gi:3706440 /DB_XREF=EST210845 /CLONE=RBRBS23 /FEA=EST /CNT=2 /TID=Rn.19576.1 /TIER=ConsEnd /STK=2 /UG=Rn.19576 /UG_TITLE=ESTs AI101556 speedy homolog A (Xenopus laevis) Spdya 192209 NM_138855 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0000082 // G1/S transition of mitotic cell cycle // inferred from sequence or structural similarity /// 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // not recorded /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // inferred from sequence or structural similarity /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0019901 // protein kinase binding // inferred from electronic annotation 1381159_at AI548586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548586 /DB_XREF=gi:4466074 /DB_XREF=UI-R-C3-td-e-07-0-UI.s1 /CLONE=UI-R-C3-td-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.41769.1 /TIER=ConsEnd /STK=2 /UG=Rn.41769 /UG_TITLE=ESTs AI548586 1381160_at AW522852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522852 /DB_XREF=gi:7165237 /DB_XREF=UI-R-BO0-ahn-e-05-0-UI.s1 /CLONE=UI-R-BO0-ahn-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.41950.2 /TIER=ConsEnd /STK=2 /UG=Rn.41950 /UG_TITLE=ESTs AW522852 transmembrane protein 200C Tmem200c 501201 XM_001054710 /// XM_576628 1381161_a_at BI301117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301117 /DB_XREF=gi:14977397 /DB_XREF=UI-R-DN0-cit-d-15-0-UI.s1 /CLONE=UI-R-DN0-cit-d-15-0-UI /FEA=EST /CNT=2 /TID=Rn.12905.1 /TIER=ConsEnd /STK=2 /UG=Rn.12905 /UG_TITLE=ESTs BI301117 1381162_at AI136863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136863 /DB_XREF=gi:3637640 /DB_XREF=UI-R-C2p-of-d-05-0-UI.s1 /CLONE=UI-R-C2p-of-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.27246.1 /TIER=ConsEnd /STK=2 /UG=Rn.27246 /UG_TITLE=ESTs AI136863 Septin 10 Sept10 309891 NM_001014033 0007049 // cell cycle // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0031105 // septin complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1381163_at AI229248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229248 /DB_XREF=gi:3813135 /DB_XREF=EST225943 /CLONE=RBRDF91 /FEA=EST /CNT=2 /TID=Rn.37378.1 /TIER=ConsEnd /STK=2 /UG=Rn.37378 /UG_TITLE=ESTs AI229248 1381164_at BF386935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386935 /DB_XREF=gi:11371759 /DB_XREF=UI-R-CA1-bbj-c-08-0-UI.s1 /CLONE=UI-R-CA1-bbj-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.61242.1 /TIER=ConsEnd /STK=2 /UG=Rn.61242 /UG_TITLE=ESTs BF386935 1381165_at BF403479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403479 /DB_XREF=gi:11391454 /DB_XREF=UI-R-CA1-biz-b-20-0-UI.s1 /CLONE=UI-R-CA1-biz-b-20-0-UI /FEA=EST /CNT=2 /TID=Rn.61823.1 /TIER=ConsEnd /STK=2 /UG=Rn.61823 /UG_TITLE=ESTs BF403479 1381166_at AA944650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944650 /DB_XREF=gi:4132444 /DB_XREF=EST200149 /CLONE=REMAM35 /FEA=EST /CNT=2 /TID=Rn.23624.1 /TIER=ConsEnd /STK=2 /UG=Rn.23624 /UG_TITLE=ESTs AA944650 1381167_at BF390767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390767 /DB_XREF=gi:11375614 /DB_XREF=UI-R-CA1-bcp-c-03-0-UI.s1 /CLONE=UI-R-CA1-bcp-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.34438.1 /TIER=ConsEnd /STK=2 /UG=Rn.34438 /UG_TITLE=ESTs BF390767 T-cell lymphoma invasion and metastasis 1 Tiam1 304109 NM_001100558 0006915 // apoptosis // not recorded /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0048013 // ephrin receptor signaling pathway // not recorded /// 0050772 // positive regulation of axonogenesis // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005543 // phospholipid binding // not recorded /// 0046875 // ephrin receptor binding // not recorded 1381168_at BF389548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389548 /DB_XREF=gi:11374383 /DB_XREF=UI-R-CJ0-bfd-a-06-0-UI.s1 /CLONE=UI-R-CJ0-bfd-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.41008.1 /TIER=ConsEnd /STK=2 /UG=Rn.41008 /UG_TITLE=ESTs BF389548 homeodomain interacting protein kinase 4 Hipk4 308449 NM_001024776 0006468 // protein phosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1381169_at AW253396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253396 /DB_XREF=gi:6596987 /DB_XREF=UI-R-BJ0-aen-d-08-0-UI.s1 /CLONE=UI-R-BJ0-aen-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.44779.1 /TIER=ConsEnd /STK=2 /UG=Rn.44779 /UG_TITLE=ESTs AW253396 1381170_at BM391951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391951 /DB_XREF=gi:18192004 /DB_XREF=UI-R-DM1-ckc-l-19-0-UI.s2 /CLONE=UI-R-DM1-ckc-l-19-0-UI /FEA=EST /CNT=2 /TID=Rn.57622.1 /TIER=ConsEnd /STK=2 /UG=Rn.57622 /UG_TITLE=ESTs BM391951 1381171_at BF410022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410022 /DB_XREF=gi:11397997 /DB_XREF=UI-R-CA0-bjs-f-03-0-UI.s1 /CLONE=UI-R-CA0-bjs-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.61520.1 /TIER=ConsEnd /STK=2 /UG=Rn.61520 /UG_TITLE=ESTs BF410022 1381172_at BE102662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102662 /DB_XREF=gi:8494761 /DB_XREF=UI-R-BT1-aqs-f-01-0-UI.s1 /CLONE=UI-R-BT1-aqs-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.62371.1 /TIER=ConsEnd /STK=2 /UG=Rn.62371 /UG_TITLE=ESTs BE102662 1381173_at BG375010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375010 /DB_XREF=gi:13299482 /DB_XREF=UI-R-CV1-bst-a-11-0-UI.s1 /CLONE=UI-R-CV1-bst-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.66275.1 /TIER=ConsEnd /STK=2 /UG=Rn.66275 /UG_TITLE=ESTs BG375010 1381174_at BG381120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381120 /DB_XREF=gi:13305592 /DB_XREF=UI-R-CS0-btr-e-01-0-UI.s1 /CLONE=UI-R-CS0-btr-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.43538.1 /TIER=ConsEnd /STK=2 /UG=Rn.43538 /UG_TITLE=ESTs BG381120 SEL1 domain containing protein RGD735029 RGD735029 307480 NM_199493 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005488 // binding // inferred from electronic annotation 1381175_at BE114469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114469 /DB_XREF=gi:8506574 /DB_XREF=UI-R-CA0-axm-e-11-0-UI.s1 /CLONE=UI-R-CA0-axm-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.49121.1 /TIER=ConsEnd /STK=2 /UG=Rn.49121 /UG_TITLE=ESTs BE114469 similar to modulator of estrogen induced transcription RGD1307526 315792 XR_005468 /// XR_009637 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1381176_at BF409078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409078 /DB_XREF=gi:11397053 /DB_XREF=UI-R-BT1-bkl-g-04-0-UI.s1 /CLONE=UI-R-BT1-bkl-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.61241.1 /TIER=ConsEnd /STK=2 /UG=Rn.61241 /UG_TITLE=ESTs BF409078 1381177_at BF413483 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413483 /DB_XREF=gi:11401472 /DB_XREF=UI-R-BT1-bob-f-12-0-UI.s1 /CLONE=UI-R-BT1-bob-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.62356.1 /TIER=ConsEnd /STK=2 /UG=Rn.62356 /UG_TITLE=ESTs BF413483 actin filament associated protein 1 Afap1 140935 NM_080900 0007165 // signal transduction // non-traceable author statement /// 0009966 // regulation of signal transduction // inferred from direct assay /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // inferred from direct assay /// 0005925 // focal adhesion // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0042169 // SH2 domain binding // inferred from physical interaction 1381178_at BE120314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120314 /DB_XREF=gi:8512419 /DB_XREF=UI-R-CA0-baq-a-06-0-UI.s1 /CLONE=UI-R-CA0-baq-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.28094.1 /TIER=ConsEnd /STK=2 /UG=Rn.28094 /UG_TITLE=ESTs BE120314 1381179_at BF415421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415421 /DB_XREF=gi:11403445 /DB_XREF=UI-R-CA1-bjz-a-10-0-UI.s1 /CLONE=UI-R-CA1-bjz-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.61868.1 /TIER=ConsEnd /STK=2 /UG=Rn.61868 /UG_TITLE=ESTs BF415421 EPM2A (laforin) interacting protein 1 Epm2aip1 316021 XM_001076356 /// XM_002727140 /// XM_236659 1381180_at BG376806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376806 /DB_XREF=gi:13301278 /DB_XREF=UI-R-CA1-blh-c-07-0-UI.s1 /CLONE=UI-R-CA1-blh-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.66423.1 /TIER=ConsEnd /STK=2 /UG=Rn.66423 /UG_TITLE=ESTs BG376806 1381181_at BG377817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377817 /DB_XREF=gi:13302289 /DB_XREF=UI-R-CU0-bvf-e-04-0-UI.s1 /CLONE=UI-R-CU0-bvf-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.56177.1 /TIER=ConsEnd /STK=2 /UG=Rn.56177 /UG_TITLE=ESTs BG377817 1381182_at AI144637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144637 /DB_XREF=gi:3666436 /DB_XREF=UI-R-BT0-pl-d-01-0-UI.s1 /CLONE=UI-R-BT0-pl-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.27626.1 /TIER=ConsEnd /STK=2 /UG=Rn.27626 /UG_TITLE=ESTs AI144637 1381183_at BE102052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102052 /DB_XREF=gi:8494151 /DB_XREF=UI-R-BO1-aqe-g-08-0-UI.s1 /CLONE=UI-R-BO1-aqe-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.57136.1 /TIER=ConsEnd /STK=2 /UG=Rn.57136 /UG_TITLE=ESTs BE102052 1381184_at BF396578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396578 /DB_XREF=gi:11381552 /DB_XREF=UI-R-BS2-bdz-g-03-0-UI.s1 /CLONE=UI-R-BS2-bdz-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.58632.1 /TIER=ConsEnd /STK=2 /UG=Rn.58632 /UG_TITLE=ESTs BF396578 1381185_at AI145996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145996 /DB_XREF=gi:3667795 /DB_XREF=UI-R-BT0-pz-b-09-0-UI.s1 /CLONE=UI-R-BT0-pz-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.33679.1 /TIER=ConsEnd /STK=2 /UG=Rn.33679 /UG_TITLE=ESTs AI145996 1381186_at AW527770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527770 /DB_XREF=gi:7170224 /DB_XREF=UI-R-BO1-ajk-d-09-0-UI.s1 /CLONE=UI-R-BO1-ajk-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.46666.1 /TIER=ConsEnd /STK=2 /UG=Rn.46666 /UG_TITLE=ESTs AW527770 1381187_at BE102551 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102551 /DB_XREF=gi:8494650 /DB_XREF=UI-R-BT1-aqo-b-01-0-UI.s1 /CLONE=UI-R-BT1-aqo-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.58005.1 /TIER=ConsEnd /STK=2 /UG=Rn.58005 /UG_TITLE=ESTs BE102551 1381188_at BF390117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390117 /DB_XREF=gi:11374960 /DB_XREF=UI-R-CA1-bcj-d-09-0-UI.s1 /CLONE=UI-R-CA1-bcj-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.60021.1 /TIER=ConsEnd /STK=2 /UG=Rn.60021 /UG_TITLE=ESTs BF390117 1381189_at BF402538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402538 /DB_XREF=gi:11390513 /DB_XREF=UI-R-CA0-bhr-e-10-0-UI.s1 /CLONE=UI-R-CA0-bhr-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.61479.1 /TIER=ConsEnd /STK=2 /UG=Rn.61479 /UG_TITLE=ESTs, Weakly similar to B56021 probable cell division control protein p55CDC - rat (R.norvegicus) BF402538 fizzy/cell division cycle 20 related 1 (Drosophila) Fzr1 314642 NM_001108074 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0031572 // G2/M transition DNA damage checkpoint // not recorded /// 0040020 // regulation of meiosis // not recorded /// 0040020 // regulation of meiosis // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070306 // lens fiber cell differentiation // not recorded /// 0070306 // lens fiber cell differentiation // inferred from electronic annotation 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1381190_at AI598833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598833 /DB_XREF=gi:4607881 /DB_XREF=EST250536 /CLONE=REMDW01 /FEA=EST /CNT=2 /TID=Rn.20658.1 /TIER=ConsEnd /STK=2 /UG=Rn.20658 /UG_TITLE=ESTs AI598833 LIM domain 7 Lmo7 361084 NM_001001515 0016337 // cell-cell adhesion // inferred from expression pattern 0005913 // cell-cell adherens junction // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042805 // actinin binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1381191_at AI145988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145988 /DB_XREF=gi:3667787 /DB_XREF=UI-R-BT0-qc-h-12-0-UI.s1 /CLONE=UI-R-BT0-qc-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.28693.1 /TIER=ConsEnd /STK=2 /UG=Rn.28693 /UG_TITLE=ESTs AI145988 microRNA mir-384 Mir384 100314105 NR_032273 1381192_at BF386426 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386426 /DB_XREF=gi:11371250 /DB_XREF=UI-R-CA1-bbd-d-04-0-UI.s1 /CLONE=UI-R-CA1-bbd-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.49986.1 /TIER=ConsEnd /STK=2 /UG=Rn.49986 /UG_TITLE=ESTs BF386426 1381193_at BE115518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115518 /DB_XREF=gi:8507623 /DB_XREF=UI-R-BS1-axw-g-09-0-UI.s1 /CLONE=UI-R-BS1-axw-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.50555.1 /TIER=ConsEnd /STK=2 /UG=Rn.50555 /UG_TITLE=ESTs, Moderately similar to Y205_HUMAN HYPOTHETICAL PROTEIN KIAA0205 (H.sapiens) BE115518 lysophosphatidylglycerol acyltransferase 1 Lpgat1 679692 NM_001109376 0008152 // metabolic process // inferred from electronic annotation 0005737 // cytoplasm // not recorded 0008415 // acyltransferase activity // inferred from electronic annotation 1381194_at BE118896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118896 /DB_XREF=gi:8511001 /DB_XREF=UI-R-BS1-azw-a-08-0-UI.s1 /CLONE=UI-R-BS1-azw-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.53083.1 /TIER=ConsEnd /STK=2 /UG=Rn.53083 /UG_TITLE=ESTs BE118896 1381195_at BF389423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389423 /DB_XREF=gi:11374253 /DB_XREF=UI-R-BS2-bdj-f-08-0-UI.s1 /CLONE=UI-R-BS2-bdj-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.57415.1 /TIER=ConsEnd /STK=2 /UG=Rn.57415 /UG_TITLE=ESTs BF389423 1381196_at BF406487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406487 /DB_XREF=gi:11394462 /DB_XREF=UI-R-BJ2-bpt-e-06-0-UI.s1 /CLONE=UI-R-BJ2-bpt-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.60973.1 /TIER=ConsEnd /STK=2 /UG=Rn.60973 /UG_TITLE=ESTs BF406487 transmembrane 6 superfamily member 2 Tm6sf2 689029 NM_001127654 1381197_at BF409085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409085 /DB_XREF=gi:11397060 /DB_XREF=UI-R-BT1-bkl-g-11-0-UI.s1 /CLONE=UI-R-BT1-bkl-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.61243.1 /TIER=ConsEnd /STK=2 /UG=Rn.61243 /UG_TITLE=ESTs BF409085 1381198_at BF561716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561716 /DB_XREF=gi:11671446 /DB_XREF=UI-R-C0-ic-c-09-0-UI.r1 /CLONE=UI-R-C0-ic-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.19781.1 /TIER=ConsEnd /STK=2 /UG=Rn.19781 /UG_TITLE=ESTs BF561716 1381199_at BG376537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376537 /DB_XREF=gi:13301009 /DB_XREF=UI-R-CT0-bup-f-07-0-UI.s1 /CLONE=UI-R-CT0-bup-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.36252.1 /TIER=ConsEnd /STK=2 /UG=Rn.36252 /UG_TITLE=ESTs BG376537 hypothetical protein LOC100363351 LOC100363351 100363351 XM_002727217 /// XM_002729992 1381200_at BE106653 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106653 /DB_XREF=gi:8498755 /DB_XREF=UI-R-BO1-asq-e-09-0-UI.s1 /CLONE=UI-R-BO1-asq-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.51013.1 /TIER=ConsEnd /STK=2 /UG=Rn.51013 /UG_TITLE=ESTs BE106653 1381201_at BI280967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280967 /DB_XREF=gi:14930256 /DB_XREF=UI-R-DC0-bzo-e-04-0-UI.s1 /CLONE=UI-R-DC0-bzo-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.68511.1 /TIER=ConsEnd /STK=2 /UG=Rn.68511 /UG_TITLE=ESTs BI280967 1381202_at BM384443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384443 /DB_XREF=gi:18184496 /DB_XREF=UI-R-CN1-cjn-m-06-0-UI.s1 /CLONE=UI-R-CN1-cjn-m-06-0-UI /FEA=EST /CNT=2 /TID=Rn.81417.1 /TIER=ConsEnd /STK=2 /UG=Rn.81417 /UG_TITLE=ESTs BM384443 1381203_at AA819246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819246 /DB_XREF=gi:4227907 /DB_XREF=UI-R-A0-al-b-10-0-UI.s2 /CLONE=UI-R-A0-al-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.37003.1 /TIER=ConsEnd /STK=2 /UG=Rn.37003 /UG_TITLE=ESTs, Moderately similar to AF151819 1 CGI-61 protein (H.sapiens) AA819246 SH3-domain GRB2-like endophilin B1 Sh3glb1 292156 NM_001011929 0001844 // protein insertion into mitochondrial membrane involved in induction of apoptosis // not recorded /// 0006654 // phosphatidic acid biosynthetic process // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // not recorded /// 0046847 // filopodium assembly // inferred from electronic annotation /// 0051084 // 'de novo' posttranslational protein folding // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0043234 // protein complex // not recorded 0005504 // fatty acid binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008093 // cytoskeletal adaptor activity // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0042171 // lysophosphatidic acid acyltransferase activity // not recorded /// 0042803 // protein homodimerization activity // not recorded 1381204_at AI639430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639430 /DB_XREF=gi:4700464 /DB_XREF=rx01073s /CLONE=rx01073 /FEA=EST /CNT=2 /TID=Rn.43701.1 /TIER=ConsEnd /STK=2 /UG=Rn.43701 /UG_TITLE=ESTs AI639430 1381205_at AW531791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531791 /DB_XREF=gi:7174205 /DB_XREF=UI-R-C4-akz-b-03-0-UI.s1 /CLONE=UI-R-C4-akz-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.47597.1 /TIER=ConsEnd /STK=2 /UG=Rn.47597 /UG_TITLE=ESTs AW531791 Small nuclear RNA activating complex, polypeptide 5 Snapc5 691501 NM_001109643 1381206_at BE121026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121026 /DB_XREF=gi:8513131 /DB_XREF=UI-R-CA0-bar-c-05-0-UI.s1 /CLONE=UI-R-CA0-bar-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.53717.1 /TIER=ConsEnd /STK=2 /UG=Rn.53717 /UG_TITLE=ESTs BE121026 phosphatidylinositol-specific phospholipase C, X domain containing 2 Plcxd2 363781 NM_001134481 0006629 // lipid metabolic process // inferred from electronic annotation 0004629 // phospholipase C activity // inferred from electronic annotation /// 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation 1381207_at BE120425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120425 /DB_XREF=gi:8512530 /DB_XREF=UI-R-CA0-bam-c-08-0-UI.s1 /CLONE=UI-R-CA0-bam-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.62009.1 /TIER=ConsEnd /STK=2 /UG=Rn.62009 /UG_TITLE=ESTs BE120425 1381208_at BE104595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104595 /DB_XREF=gi:8496695 /DB_XREF=UI-R-BX0-arr-c-04-0-UI.s1 /CLONE=UI-R-BX0-arr-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.13210.1 /TIER=ConsEnd /STK=2 /UG=Rn.13210 /UG_TITLE=ESTs BE104595 histone cluster 3, H2a Hist3h2a 64646 NM_021840 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1381209_at AI072279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072279 /DB_XREF=gi:3398473 /DB_XREF=UI-R-C2-ne-e-05-0-UI.s1 /CLONE=UI-R-C2-ne-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.23521.1 /TIER=ConsEnd /STK=2 /UG=Rn.23521 /UG_TITLE=ESTs AI072279 1381210_at AI639521 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639521 /DB_XREF=gi:4700555 /DB_XREF=rx01330s /CLONE=rx01330 /FEA=EST /CNT=2 /TID=Rn.43708.1 /TIER=ConsEnd /STK=2 /UG=Rn.43708 /UG_TITLE=ESTs AI639521 1381211_at BF414994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414994 /DB_XREF=gi:11402983 /DB_XREF=UI-R-BJ2-boy-d-12-0-UI.s1 /CLONE=UI-R-BJ2-boy-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.45721.1 /TIER=ConsEnd /STK=2 /UG=Rn.45721 /UG_TITLE=ESTs BF414994 1381212_at BG378695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378695 /DB_XREF=gi:13303167 /DB_XREF=UI-R-BT1-bnj-f-07-0-UI.s1 /CLONE=UI-R-BT1-bnj-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.56577.1 /TIER=ConsEnd /STK=2 /UG=Rn.56577 /UG_TITLE=ESTs, Highly similar to PTX3 MOUSE PENTAXIN-RELATED PROTEIN PTX3 PRECURSOR (M.musculus) BG378695 1381213_at BE117138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117138 /DB_XREF=gi:8509243 /DB_XREF=UI-R-BS1-aym-c-08-0-UI.s1 /CLONE=UI-R-BS1-aym-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.56776.1 /TIER=ConsEnd /STK=2 /UG=Rn.56776 /UG_TITLE=ESTs BE117138 nuclear factor I/X (CCAAT-binding transcription factor) Nfix 81524 NM_030866 0006260 // DNA replication // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation 1381214_at BF391527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391527 /DB_XREF=gi:11376344 /DB_XREF=UI-R-CA1-bcs-a-10-0-UI.s1 /CLONE=UI-R-CA1-bcs-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.62856.1 /TIER=ConsEnd /STK=2 /UG=Rn.62856 /UG_TITLE=ESTs BF391527 1381215_at AA900967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900967 /DB_XREF=gi:4233463 /DB_XREF=UI-R-E0-dj-b-02-0-UI.s1 /CLONE=UI-R-E0-dj-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.15133.1 /TIER=ConsEnd /STK=2 /UG=Rn.15133 /UG_TITLE=ESTs AA900967 numb homolog (Drosophila)-like Numbl 292732 NM_001033888 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007405 // neuroblast proliferation // inferred from electronic annotation /// 0007405 // neuroblast proliferation // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from sequence or structural similarity /// 0019538 // protein metabolic process // inferred from electronic annotation /// 0019538 // protein metabolic process // not recorded /// 0019538 // protein metabolic process // inferred from sequence or structural similarity /// 0021670 // lateral ventricle development // inferred from electronic annotation /// 0021670 // lateral ventricle development // not recorded /// 0021670 // lateral ventricle development // inferred from sequence or structural similarity /// 0021849 // neuroblast division in subventricular zone // inferred from electronic annotation /// 0021849 // neuroblast division in subventricular zone // not recorded /// 0021849 // neuroblast division in subventricular zone // inferred from sequence or structural similarity /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0034332 // adherens junction organization // inferred from electronic annotation /// 0034332 // adherens junction organization // not recorded /// 0050769 // positive regulation of neurogenesis // not recorded /// 0050769 // positive regulation of neurogenesis // inferred from sequence or structural similarity /// 0050769 // positive regulation of neurogenesis // inferred from electronic annotation /// 0050775 // positive regulation of dendrite morphogenesis // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1381216_at BI294178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294178 /DB_XREF=gi:14956386 /DB_XREF=UI-R-DK0-cdv-e-06-0-UI.s1 /CLONE=UI-R-DK0-cdv-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.15887.1 /TIER=ConsEnd /STK=2 /UG=Rn.15887 /UG_TITLE=ESTs BI294178 1381217_at AI639158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639158 /DB_XREF=gi:4700192 /DB_XREF=rx00522s /CLONE=rx00522 /FEA=EST /CNT=2 /TID=Rn.43906.1 /TIER=ConsEnd /STK=2 /UG=Rn.43906 /UG_TITLE=ESTs, Weakly similar to IF3Y_YEAST EUKARYOTIC TRANSLATION INITIATION FACTOR 3 62 KDA SUBUNIT (EIF3 P62) (TRANSLATION INITIATION FACTOR EIF3, P62 SUBUNIT) (GCD10 PROTEIN) (S.cerevisiae) AI639158 tRNA methyltransferase 6 homolog (S. cerevisiae) Trmt6 311441 NM_001107779 0006413 // translational initiation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred from electronic annotation 1381218_at BF386446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386446 /DB_XREF=gi:11371270 /DB_XREF=UI-R-CA1-bbd-f-03-0-UI.s1 /CLONE=UI-R-CA1-bbd-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.56272.1 /TIER=ConsEnd /STK=2 /UG=Rn.56272 /UG_TITLE=ESTs BF386446 1381219_at BI290453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290453 /DB_XREF=gi:14949042 /DB_XREF=UI-R-DK0-cfw-e-01-0-UI.s1 /CLONE=UI-R-DK0-cfw-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.79154.1 /TIER=ConsEnd /STK=2 /UG=Rn.79154 /UG_TITLE=ESTs, Highly similar to 1915177A myosin:SUBUNIT=H (R.norvegicus) BI290453 myosin, heavy chain 11, smooth muscle Myh11 24582 NM_001170600 /// XM_001053471 /// XM_573030 0006936 // muscle contraction // not recorded /// 0006939 // smooth muscle contraction // not recorded /// 0006939 // smooth muscle contraction // non-traceable author statement /// 0006939 // smooth muscle contraction // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0048251 // elastic fiber assembly // not recorded /// 0048739 // cardiac muscle fiber development // not recorded 0001725 // stress fiber // not recorded /// 0001725 // stress fiber // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005859 // muscle myosin complex // not recorded /// 0005859 // muscle myosin complex // non-traceable author statement /// 0005859 // muscle myosin complex // inferred from electronic annotation /// 0016459 // myosin complex // inferred from electronic annotation /// 0016459 // myosin complex // not recorded /// 0030016 // myofibril // inferred from electronic annotation /// 0030485 // smooth muscle contractile fiber // not recorded /// 0030485 // smooth muscle contractile fiber // inferred from electronic annotation /// 0032982 // myosin filament // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003774 // motor activity // not recorded /// 0003779 // actin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008307 // structural constituent of muscle // not recorded /// 0008307 // structural constituent of muscle // non-traceable author statement 1381220_at BM383968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383968 /DB_XREF=gi:18184021 /DB_XREF=UI-R-DM1-ckc-k-23-0-UI.s1 /CLONE=UI-R-DM1-ckc-k-23-0-UI /FEA=EST /CNT=2 /TID=Rn.29435.1 /TIER=ConsEnd /STK=2 /UG=Rn.29435 /UG_TITLE=ESTs BM383968 activin A receptor, type IIA Acvr2a 29263 NM_031571 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // not recorded /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // not recorded /// 0007498 // mesoderm development // inferred from electronic annotation /// 0007498 // mesoderm development // not recorded /// 0008584 // male gonad development // not recorded /// 0008584 // male gonad development // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0030501 // positive regulation of bone mineralization // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // not recorded /// 0030509 // BMP signaling pathway // not recorded /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030510 // regulation of BMP signaling pathway // inferred from electronic annotation /// 0030510 // regulation of BMP signaling pathway // not recorded /// 0032924 // activin receptor signaling pathway // inferred from electronic annotation /// 0032927 // positive regulation of activin receptor signaling pathway // inferred from electronic annotation /// 0032927 // positive regulation of activin receptor signaling pathway // not recorded /// 0042713 // sperm ejaculation // inferred from electronic annotation /// 0042713 // sperm ejaculation // not recorded /// 0043084 // penile erection // inferred from electronic annotation /// 0043084 // penile erection // not recorded /// 0045648 // positive regulation of erythrocyte differentiation // inferred from electronic annotation /// 0045648 // positive regulation of erythrocyte differentiation // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0046881 // positive regulation of follicle-stimulating hormone secretion // inferred from mutant phenotype /// 0048706 // embryonic skeletal system development // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // not recorded /// 0050999 // regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0050999 // regulation of nitric-oxide synthase activity // not recorded /// 0060011 // Sertoli cell proliferation // inferred from electronic annotation /// 0060011 // Sertoli cell proliferation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0034673 // inhibin-betaglycan-ActRII complex // inferred from electronic annotation /// 0034673 // inhibin-betaglycan-ActRII complex // not recorded /// 0048179 // activin receptor complex // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // traceable author statement /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // inferred from electronic annotation /// 0004702 // receptor signaling protein serine/threonine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015026 // coreceptor activity // inferred from electronic annotation /// 0015026 // coreceptor activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016362 // activin receptor activity, type II // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0017002 // activin receptor activity // not recorded /// 0017002 // activin receptor activity // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded /// 0043621 // protein self-association // inferred from electronic annotation /// 0043621 // protein self-association // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048185 // activin binding // inferred from direct assay /// 0048185 // activin binding // not recorded /// 0048185 // activin binding // traceable author statement /// 0048185 // activin binding // inferred from electronic annotation /// 0048186 // inhibin beta-A binding // inferred from direct assay /// 0048186 // inhibin beta-A binding // not recorded /// 0048186 // inhibin beta-A binding // inferred from electronic annotation /// 0048187 // inhibin beta-B binding // inferred from direct assay 1381221_at AI012548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012548 /DB_XREF=gi:4133657 /DB_XREF=EST206999 /CLONE=RPLAY74 /FEA=EST /CNT=2 /TID=Rn.33231.1 /TIER=ConsEnd /STK=2 /UG=Rn.33231 /UG_TITLE=ESTs AI012548 similar to T cell receptor V delta 6 RGD1311300 364378 0004872 // receptor activity // inferred from electronic annotation 1381222_at BF387913 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387913 /DB_XREF=gi:11372737 /DB_XREF=UI-R-CA1-bbw-b-12-0-UI.s1 /CLONE=UI-R-CA1-bbw-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.63029.1 /TIER=ConsEnd /STK=2 /UG=Rn.63029 /UG_TITLE=ESTs BF387913 1381223_at BG372869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372869 /DB_XREF=gi:13269406 /DB_XREF=UI-R-CV1-bsa-g-02-0-UI.s1 /CLONE=UI-R-CV1-bsa-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.73434.1 /TIER=ConsEnd /STK=2 /UG=Rn.73434 /UG_TITLE=ESTs, Highly similar to ANX9_MOUSE Annexin A9 (Annexin 31) (Annexin XXXI) (M.musculus) BG372869 annexin A9 Anxa9 689830 XM_001072193 /// XM_002726022 0016337 // cell-cell adhesion // not recorded 0005829 // cytosol // not recorded /// 0009986 // cell surface // not recorded 0001786 // phosphatidylserine binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005543 // phospholipid binding // not recorded /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation /// 0015464 // acetylcholine receptor activity // not recorded 1381224_at AI502861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502861 /DB_XREF=gi:4400712 /DB_XREF=UI-R-BT0-pm-h-01-0-UI.s1 /CLONE=UI-R-BT0-pm-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.34576.1 /TIER=ConsEnd /STK=2 /UG=Rn.34576 /UG_TITLE=ESTs AI502861 Similar to Zinc finger protein 551 (Zinc finger protein KOX23) LOC691396 691396 XM_001078065 1381225_at BE119934 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119934 /DB_XREF=gi:8512039 /DB_XREF=UI-R-CA0-baj-f-09-0-UI.s1 /CLONE=UI-R-CA0-baj-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.38671.1 /TIER=ConsEnd /STK=2 /UG=Rn.38671 /UG_TITLE=ESTs BE119934 1381226_at BF412152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412152 /DB_XREF=gi:11400141 /DB_XREF=UI-R-BT1-bmu-d-11-0-UI.s1 /CLONE=UI-R-BT1-bmu-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.62014.1 /TIER=ConsEnd /STK=2 /UG=Rn.62014 /UG_TITLE=ESTs BF412152 1381227_at BF416819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416819 /DB_XREF=gi:11404808 /DB_XREF=UI-R-CA0-bkv-d-08-0-UI.s1 /CLONE=UI-R-CA0-bkv-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.63152.1 /TIER=ConsEnd /STK=2 /UG=Rn.63152 /UG_TITLE=ESTs BF416819 1381228_at AI073001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073001 /DB_XREF=gi:3399195 /DB_XREF=UI-R-Y0-md-b-11-0-UI.s1 /CLONE=UI-R-Y0-md-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.20328.1 /TIER=ConsEnd /STK=2 /UG=Rn.20328 /UG_TITLE=ESTs AI073001 1381229_at BE117665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117665 /DB_XREF=gi:8509770 /DB_XREF=UI-R-BS1-aze-e-02-0-UI.s1 /CLONE=UI-R-BS1-aze-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.32771.1 /TIER=ConsEnd /STK=2 /UG=Rn.32771 /UG_TITLE=ESTs BE117665 1381230_at BE099095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099095 /DB_XREF=gi:8490971 /DB_XREF=UI-R-BJ1-ati-c-04-0-UI.s1 /CLONE=UI-R-BJ1-ati-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.49665.1 /TIER=ConsEnd /STK=2 /UG=Rn.49665 /UG_TITLE=ESTs BE099095 Spermatogenesis associated 2-like Spata2L 498963 NM_001109133 1381231_at AW533912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533912 /DB_XREF=gi:7176373 /DB_XREF=UI-R-C4-alr-b-09-0-UI.s1 /CLONE=UI-R-C4-alr-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.50351.1 /TIER=ConsEnd /STK=2 /UG=Rn.50351 /UG_TITLE=ESTs AW533912 1381232_at BF410410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410410 /DB_XREF=gi:11398385 /DB_XREF=UI-R-CA1-bjx-b-09-0-UI.s1 /CLONE=UI-R-CA1-bjx-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.61696.1 /TIER=ConsEnd /STK=2 /UG=Rn.61696 /UG_TITLE=ESTs BF410410 1381233_at AW528010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528010 /DB_XREF=gi:7170424 /DB_XREF=UI-R-BT1-akg-f-08-0-UI.s1 /CLONE=UI-R-BT1-akg-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.21708.1 /TIER=ConsEnd /STK=2 /UG=Rn.21708 /UG_TITLE=ESTs AW528010 1381234_at BF398454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398454 /DB_XREF=gi:11383444 /DB_XREF=UI-R-BS2-bep-a-07-0-UI.s1 /CLONE=UI-R-BS2-bep-a-07-0-UI /FEA=EST /CNT=2 /TID=Rn.59082.1 /TIER=ConsEnd /STK=2 /UG=Rn.59082 /UG_TITLE=ESTs BF398454 1381235_at BE119846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119846 /DB_XREF=gi:8511951 /DB_XREF=UI-R-CA0-ban-f-10-0-UI.s1 /CLONE=UI-R-CA0-ban-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.62013.1 /TIER=ConsEnd /STK=2 /UG=Rn.62013 /UG_TITLE=ESTs BE119846 1381236_at AI578104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578104 /DB_XREF=gi:4562480 /DB_XREF=UI-R-C3-tk-f-10-0-UI.s2 /CLONE=UI-R-C3-tk-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.48199.1 /TIER=ConsEnd /STK=2 /UG=Rn.48199 /UG_TITLE=ESTs AI578104 1381237_at AW534521 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534521 /DB_XREF=gi:7176935 /DB_XREF=UI-R-BS0-ans-e-09-0-UI.s1 /CLONE=UI-R-BS0-ans-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.48348.1 /TIER=ConsEnd /STK=2 /UG=Rn.48348 /UG_TITLE=ESTs AW534521 1381238_at BE102046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102046 /DB_XREF=gi:8494145 /DB_XREF=UI-R-BO1-aqe-g-01-0-UI.s1 /CLONE=UI-R-BO1-aqe-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.61899.1 /TIER=ConsEnd /STK=2 /UG=Rn.61899 /UG_TITLE=ESTs BE102046 1381239_at BF406209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406209 /DB_XREF=gi:11394184 /DB_XREF=UI-R-CA1-bjf-e-04-0-UI.s1 /CLONE=UI-R-CA1-bjf-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.59945.1 /TIER=ConsEnd /STK=2 /UG=Rn.59945 /UG_TITLE=ESTs BF406209 1381240_at BF418971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418971 /DB_XREF=gi:11406960 /DB_XREF=UI-R-BJ2-bqm-a-10-0-UI.s1 /CLONE=UI-R-BJ2-bqm-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.63460.1 /TIER=ConsEnd /STK=2 /UG=Rn.63460 /UG_TITLE=ESTs BF418971 1381241_at BE102033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102033 /DB_XREF=gi:8494131 /DB_XREF=UI-R-BO1-aqe-e-08-0-UI.s1 /CLONE=UI-R-BO1-aqe-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.66653.1 /TIER=ConsEnd /STK=2 /UG=Rn.66653 /UG_TITLE=ESTs BE102033 1381242_at AA875536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875536 /DB_XREF=gi:4231414 /DB_XREF=UI-R-E0-cv-g-06-0-UI.s1 /CLONE=UI-R-E0-cv-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.32246.1 /TIER=ConsEnd /STK=2 /UG=Rn.32246 /UG_TITLE=ESTs AA875536 1381243_at BE102374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102374 /DB_XREF=gi:8494473 /DB_XREF=UI-R-BT1-aql-g-10-0-UI.s1 /CLONE=UI-R-BT1-aql-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.47320.1 /TIER=ConsEnd /STK=2 /UG=Rn.47320 /UG_TITLE=ESTs BE102374 1381244_at BE109241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109241 /DB_XREF=gi:8501346 /DB_XREF=UI-R-BS1-azd-e-08-0-UI.s1 /CLONE=UI-R-BS1-azd-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.51698.1 /TIER=ConsEnd /STK=2 /UG=Rn.51698 /UG_TITLE=ESTs BE109241 1381245_at AA943546 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943546 /DB_XREF=gi:3103462 /DB_XREF=EST199045 /CLONE=RBRAL31 /FEA=EST /CNT=2 /TID=Rn.7590.1 /TIER=ConsEnd /STK=2 /UG=Rn.7590 /UG_TITLE=ESTs AA943546 1381246_at BI293437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293437 /DB_XREF=gi:14954929 /DB_XREF=UI-R-DK0-cdq-d-12-0-UI.s1 /CLONE=UI-R-DK0-cdq-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.35550.1 /TIER=ConsEnd /STK=2 /UG=Rn.35550 /UG_TITLE=ESTs BI293437 1381247_at BE096812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096812 /DB_XREF=gi:8487743 /DB_XREF=UI-R-BU0-apn-e-02-0-UI.s1 /CLONE=UI-R-BU0-apn-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.41590.1 /TIER=ConsEnd /STK=2 /UG=Rn.41590 /UG_TITLE=ESTs BE096812 1381248_at AI763874 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763874 /DB_XREF=gi:5209809 /DB_XREF=UI-R-Y0-act-b-03-0-UI.s1 /CLONE=UI-R-Y0-act-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.44544.1 /TIER=ConsEnd /STK=2 /UG=Rn.44544 /UG_TITLE=ESTs AI763874 1381249_at BF390089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390089 /DB_XREF=gi:11374931 /DB_XREF=UI-R-CA1-bcj-b-02-0-UI.s1 /CLONE=UI-R-CA1-bcj-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.57076.1 /TIER=ConsEnd /STK=2 /UG=Rn.57076 /UG_TITLE=ESTs BF390089 1381250_at BF399737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399737 /DB_XREF=gi:11384747 /DB_XREF=UI-R-CA0-bhx-h-10-0-UI.s1 /CLONE=UI-R-CA0-bhx-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.63508.1 /TIER=ConsEnd /STK=2 /UG=Rn.63508 /UG_TITLE=ESTs BF399737 1381251_at AI511229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511229 /DB_XREF=gi:4416928 /DB_XREF=UI-R-C3-sg-f-04-0-UI.s1 /CLONE=UI-R-C3-sg-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.30139.1 /TIER=ConsEnd /STK=2 /UG=Rn.30139 /UG_TITLE=ESTs AI511229 DMRT-like family C1c Dmrtc1c 363483 NM_001014222 1381252_at BE098160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098160 /DB_XREF=gi:8489988 /DB_XREF=UI-R-BJ1-ata-b-08-0-UI.s1 /CLONE=UI-R-BJ1-ata-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.49761.1 /TIER=ConsEnd /STK=2 /UG=Rn.49761 /UG_TITLE=ESTs, Highly similar to A61209 hypertension-associated protein SA - rat (R.norvegicus) BE098160 exoribonuclease 2 Eri2 691484 NM_001191114 /// XM_001078485 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1381253_at BF398826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398826 /DB_XREF=gi:11383827 /DB_XREF=UI-R-CA1-biz-i-17-0-UI.s1 /CLONE=UI-R-CA1-biz-i-17-0-UI /FEA=EST /CNT=2 /TID=Rn.59172.1 /TIER=ConsEnd /STK=2 /UG=Rn.59172 /UG_TITLE=ESTs BF398826 1381254_at BF403021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403021 /DB_XREF=gi:11390996 /DB_XREF=UI-R-CA0-bhl-e-12-0-UI.s1 /CLONE=UI-R-CA0-bhl-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.59890.1 /TIER=ConsEnd /STK=2 /UG=Rn.59890 /UG_TITLE=ESTs BF403021 1381255_at AA956474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956474 /DB_XREF=gi:4238948 /DB_XREF=UI-R-E1-fm-d-07-0-UI.s1 /CLONE=UI-R-E1-fm-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.32849.1 /TIER=ConsEnd /STK=2 /UG=Rn.32849 /UG_TITLE=ESTs AA956474 1381256_at BI276190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276190 /DB_XREF=gi:14920866 /DB_XREF=UI-R-CX0-bxf-b-06-0-UI.s1 /CLONE=UI-R-CX0-bxf-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.66269.2 /TIER=ConsEnd /STK=2 /UG=Rn.66269 /UG_TITLE=ESTs BI276190 1381257_at BE118823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118823 /DB_XREF=gi:8510928 /DB_XREF=UI-R-BS1-azv-b-09-0-UI.s1 /CLONE=UI-R-BS1-azv-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.53070.1 /TIER=ConsEnd /STK=2 /UG=Rn.53070 /UG_TITLE=ESTs, Weakly similar to T00366 hypothetical protein KIAA0669 (H.sapiens) BE118823 TSC22 domain family, member 1 Tsc22d1 498545 NM_001109912 /// NM_013043 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1381258_at BF410432 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410432 /DB_XREF=gi:11398407 /DB_XREF=UI-R-CA1-bjx-d-10-0-UI.s1 /CLONE=UI-R-CA1-bjx-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.61703.1 /TIER=ConsEnd /STK=2 /UG=Rn.61703 /UG_TITLE=ESTs BF410432 1381259_at BM391784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391784 /DB_XREF=gi:18191837 /DB_XREF=UI-R-DO1-cmk-i-03-0-UI.s1 /CLONE=UI-R-DO1-cmk-i-03-0-UI /FEA=EST /CNT=2 /TID=Rn.11715.1 /TIER=ConsEnd /STK=2 /UG=Rn.11715 /UG_TITLE=ESTs BM391784 stromal antigen 1 Stag1 315958 NM_001108179 0000785 // chromatin // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1381260_at AI764020 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764020 /DB_XREF=gi:5209955 /DB_XREF=UI-R-Y0-acv-h-07-0-UI.s1 /CLONE=UI-R-Y0-acv-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.48973.1 /TIER=ConsEnd /STK=2 /UG=Rn.48973 /UG_TITLE=ESTs AI764020 1381261_at BE113729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113729 /DB_XREF=gi:8505834 /DB_XREF=UI-R-BJ1-aws-g-04-0-UI.s1 /CLONE=UI-R-BJ1-aws-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.49060.1 /TIER=ConsEnd /STK=2 /UG=Rn.49060 /UG_TITLE=ESTs BE113729 1381262_at BG374101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374101 /DB_XREF=gi:13298573 /DB_XREF=UI-R-CV1-bsj-e-01-0-UI.s1 /CLONE=UI-R-CV1-bsj-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.66187.1 /TIER=ConsEnd /STK=2 /UG=Rn.66187 /UG_TITLE=ESTs BG374101 1381263_at H33747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33747 /DB_XREF=gi:979164 /DB_XREF=EST110049 /CLONE=RPNAZ19 /FEA=EST /CNT=2 /TID=Rn.22684.1 /TIER=ConsEnd /STK=2 /UG=Rn.22684 /UG_TITLE=ESTs H33747 1381264_at BE099664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099664 /DB_XREF=gi:8491543 /DB_XREF=UI-R-BJ1-atp-h-07-0-UI.s1 /CLONE=UI-R-BJ1-atp-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.45379.1 /TIER=ConsEnd /STK=2 /UG=Rn.45379 /UG_TITLE=ESTs BE099664 1381265_at BE099149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099149 /DB_XREF=gi:8491025 /DB_XREF=UI-R-BJ1-ati-g-11-0-UI.s1 /CLONE=UI-R-BJ1-ati-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.24793.1 /TIER=ConsEnd /STK=2 /UG=Rn.24793 /UG_TITLE=ESTs BE099149 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1381266_at AI704633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI704633 /DB_XREF=gi:4992533 /DB_XREF=UI-R-AB1-yw-d-07-0-UI.s1 /CLONE=UI-R-AB1-yw-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.40929.1 /TIER=ConsEnd /STK=2 /UG=Rn.40929 /UG_TITLE=ESTs AI704633 1381267_at BI292529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292529 /DB_XREF=gi:14953117 /DB_XREF=UI-R-DO0-ciw-o-03-0-UI.s1 /CLONE=UI-R-DO0-ciw-o-03-0-UI /FEA=EST /CNT=2 /TID=Rn.28554.1 /TIER=ConsEnd /STK=2 /UG=Rn.28554 /UG_TITLE=ESTs BI292529 1381268_at BG377504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377504 /DB_XREF=gi:13301976 /DB_XREF=UI-R-CU0-bvd-e-08-0-UI.s1 /CLONE=UI-R-CU0-bvd-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.32116.1 /TIER=ConsEnd /STK=2 /UG=Rn.32116 /UG_TITLE=ESTs BG377504 forkhead box I1 Foxi1 287185 NM_001105776 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1381269_at AI548721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548721 /DB_XREF=gi:4466209 /DB_XREF=UI-R-C3-tw-f-06-0-UI.s1 /CLONE=UI-R-C3-tw-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.41629.1 /TIER=ConsEnd /STK=2 /UG=Rn.41629 /UG_TITLE=ESTs AI548721 1381270_at AW522565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522565 /DB_XREF=gi:7164950 /DB_XREF=UI-R-BO0-ahd-b-05-0-UI.s1 /CLONE=UI-R-BO0-ahd-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.45426.1 /TIER=ConsEnd /STK=2 /UG=Rn.45426 /UG_TITLE=ESTs AW522565 1381271_at BF403362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403362 /DB_XREF=gi:11391377 /DB_XREF=UI-R-CA1-biy-d-17-0-UI.s1 /CLONE=UI-R-CA1-biy-d-17-0-UI /FEA=EST /CNT=2 /TID=Rn.60271.1 /TIER=ConsEnd /STK=2 /UG=Rn.60271 /UG_TITLE=ESTs BF403362 1381272_at BE120246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120246 /DB_XREF=gi:8512351 /DB_XREF=UI-R-CA0-bal-c-03-0-UI.s1 /CLONE=UI-R-CA0-bal-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.61857.1 /TIER=ConsEnd /STK=2 /UG=Rn.61857 /UG_TITLE=ESTs BE120246 1381273_at AW532624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532624 /DB_XREF=gi:7175003 /DB_XREF=UI-R-BS0-amp-f-04-0-UI.s1 /CLONE=UI-R-BS0-amp-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.47978.1 /TIER=ConsEnd /STK=2 /UG=Rn.47978 /UG_TITLE=ESTs AW532624 1381274_at BE118993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118993 /DB_XREF=gi:8511098 /DB_XREF=UI-R-CA0-azx-b-08-0-UI.s1 /CLONE=UI-R-CA0-azx-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.49092.1 /TIER=ConsEnd /STK=2 /UG=Rn.49092 /UG_TITLE=ESTs BE118993 1381275_at AI179171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179171 /DB_XREF=gi:4135131 /DB_XREF=EST222855 /CLONE=RSPCC77 /FEA=EST /CNT=2 /TID=Rn.44127.1 /TIER=ConsEnd /STK=2 /UG=Rn.44127 /UG_TITLE=ESTs AI179171 1381276_at AW526951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526951 /DB_XREF=gi:7169365 /DB_XREF=UI-R-BO1-ajf-h-05-0-UI.s1 /CLONE=UI-R-BO1-ajf-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.49099.1 /TIER=ConsEnd /STK=2 /UG=Rn.49099 /UG_TITLE=ESTs, Highly similar to JC6508 brahma related gene associated factor BAF60 b protein - rat (R.norvegicus) AW526951 1381277_at BI295467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295467 /DB_XREF=gi:14958944 /DB_XREF=UI-R-DK0-ces-e-12-0-UI.s1 /CLONE=UI-R-DK0-ces-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.69503.1 /TIER=ConsEnd /STK=2 /UG=Rn.69503 /UG_TITLE=ESTs BI295467 homeo box B3 Hoxb3 303488 NM_001107042 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0021615 // glossopharyngeal nerve morphogenesis // inferred from electronic annotation /// 0021615 // glossopharyngeal nerve morphogenesis // not recorded /// 0030878 // thyroid gland development // inferred from electronic annotation /// 0030878 // thyroid gland development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0051216 // cartilage development // inferred from electronic annotation /// 0051216 // cartilage development // not recorded /// 0060216 // definitive hemopoiesis // inferred from electronic annotation /// 0060216 // definitive hemopoiesis // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1381278_at BI286227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286227 /DB_XREF=gi:14940666 /DB_XREF=UI-R-DE0-cai-c-06-0-UI.s1 /CLONE=UI-R-DE0-cai-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.74702.1 /TIER=ConsEnd /STK=2 /UG=Rn.74702 /UG_TITLE=ESTs BI286227 1381279_at BF412519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412519 /DB_XREF=gi:11400508 /DB_XREF=UI-R-BT1-bno-e-11-0-UI.s1 /CLONE=UI-R-BT1-bno-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.46680.1 /TIER=ConsEnd /STK=2 /UG=Rn.46680 /UG_TITLE=ESTs, Weakly similar to RIP MOUSE SERINETHREONINE PROTEIN KINASE RIP (M.musculus) BF412519 receptor-interacting serine-threonine kinase 2 Ripk2 362491 NM_001191865 /// XM_001056736 /// XM_342810 0001961 // positive regulation of cytokine-mediated signaling pathway // inferred from electronic annotation /// 0001961 // positive regulation of cytokine-mediated signaling pathway // not recorded /// 0002827 // positive regulation of T-helper 1 type immune response // inferred from electronic annotation /// 0002827 // positive regulation of T-helper 1 type immune response // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0031398 // positive regulation of protein ubiquitination // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0031663 // lipopolysaccharide-mediated signaling pathway // not recorded /// 0032722 // positive regulation of chemokine production // inferred from electronic annotation /// 0032722 // positive regulation of chemokine production // not recorded /// 0032729 // positive regulation of interferon-gamma production // inferred from electronic annotation /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0032743 // positive regulation of interleukin-2 production // inferred from electronic annotation /// 0032743 // positive regulation of interleukin-2 production // not recorded /// 0032755 // positive regulation of interleukin-6 production // inferred from electronic annotation /// 0032755 // positive regulation of interleukin-6 production // not recorded /// 0032760 // positive regulation of tumor necrosis factor production // inferred from electronic annotation /// 0032760 // positive regulation of tumor necrosis factor production // not recorded /// 0032874 // positive regulation of stress-activated MAPK cascade // inferred from electronic annotation /// 0032874 // positive regulation of stress-activated MAPK cascade // not recorded /// 0033091 // positive regulation of immature T cell proliferation // inferred from electronic annotation /// 0033091 // positive regulation of immature T cell proliferation // not recorded /// 0034134 // toll-like receptor 2 signaling pathway // inferred from electronic annotation /// 0034134 // toll-like receptor 2 signaling pathway // not recorded /// 0034142 // toll-like receptor 4 signaling pathway // inferred from electronic annotation /// 0034142 // toll-like receptor 4 signaling pathway // not recorded /// 0042098 // T cell proliferation // inferred from electronic annotation /// 0042098 // T cell proliferation // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043281 // regulation of caspase activity // not recorded /// 0043330 // response to exogenous dsRNA // inferred from electronic annotation /// 0043330 // response to exogenous dsRNA // not recorded /// 0045627 // positive regulation of T-helper 1 cell differentiation // inferred from electronic annotation /// 0045627 // positive regulation of T-helper 1 cell differentiation // not recorded /// 0046330 // positive regulation of JNK cascade // inferred from electronic annotation /// 0046330 // positive regulation of JNK cascade // not recorded /// 0046641 // positive regulation of alpha-beta T cell proliferation // inferred from electronic annotation /// 0046641 // positive regulation of alpha-beta T cell proliferation // not recorded /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // not recorded /// 0050852 // T cell receptor signaling pathway // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded /// 0070427 // nucleotide-binding oligomerization domain containing 1 signaling pathway // inferred from electronic annotation /// 0070427 // nucleotide-binding oligomerization domain containing 1 signaling pathway // not recorded /// 0070431 // nucleotide-binding oligomerization domain containing 2 signaling pathway // inferred from electronic annotation /// 0070431 // nucleotide-binding oligomerization domain containing 2 signaling pathway // not recorded /// 0070555 // response to interleukin-1 // inferred from electronic annotation /// 0070555 // response to interleukin-1 // not recorded /// 0070671 // response to interleukin-12 // inferred from electronic annotation /// 0070671 // response to interleukin-12 // not recorded /// 0070673 // response to interleukin-18 // inferred from electronic annotation /// 0070673 // response to interleukin-18 // not recorded /// 0071222 // cellular response to lipopolysaccharide // not recorded /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071223 // cellular response to lipoteichoic acid // inferred from electronic annotation /// 0071223 // cellular response to lipoteichoic acid // not recorded /// 0071224 // cellular response to peptidoglycan // inferred from electronic annotation /// 0071224 // cellular response to peptidoglycan // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0030274 // LIM domain binding // inferred from electronic annotation /// 0030274 // LIM domain binding // not recorded /// 0050700 // CARD domain binding // inferred from electronic annotation /// 0050700 // CARD domain binding // not recorded 1381280_at BF415212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415212 /DB_XREF=gi:11403201 /DB_XREF=UI-R-BJ2-boz-c-06-0-UI.s1 /CLONE=UI-R-BJ2-boz-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.47220.1 /TIER=ConsEnd /STK=2 /UG=Rn.47220 /UG_TITLE=ESTs, Weakly similar to C1TC RAT C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC (R.norvegicus) BF415212 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like Mthfd2l 305248 NM_001107211 0008152 // metabolic process // inferred from electronic annotation /// 0009396 // folic acid and derivative biosynthetic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004477 // methenyltetrahydrofolate cyclohydrolase activity // inferred from electronic annotation /// 0004488 // methylenetetrahydrofolate dehydrogenase (NADP+) activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1381281_at BF415733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415733 /DB_XREF=gi:11403722 /DB_XREF=UI-R-CA0-bke-a-09-0-UI.s1 /CLONE=UI-R-CA0-bke-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.62797.1 /TIER=ConsEnd /STK=2 /UG=Rn.62797 /UG_TITLE=ESTs BF415733 1381282_at BF416808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416808 /DB_XREF=gi:11404797 /DB_XREF=UI-R-CA0-bkv-c-07-0-UI.s1 /CLONE=UI-R-CA0-bkv-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.63148.1 /TIER=ConsEnd /STK=2 /UG=Rn.63148 /UG_TITLE=ESTs BF416808 1381283_at BE105217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105217 /DB_XREF=gi:8497319 /DB_XREF=UI-R-BX0-arz-h-06-0-UI.s1 /CLONE=UI-R-BX0-arz-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.50733.1 /TIER=ConsEnd /STK=2 /UG=Rn.50733 /UG_TITLE=ESTs BE105217 1381284_at BF386160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386160 /DB_XREF=gi:11370984 /DB_XREF=UI-R-CA1-bba-f-09-0-UI.s1 /CLONE=UI-R-CA1-bba-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.62664.1 /TIER=ConsEnd /STK=2 /UG=Rn.62664 /UG_TITLE=ESTs BF386160 1381285_at BF399879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399879 /DB_XREF=gi:11384890 /DB_XREF=UI-R-CA1-bja-a-08-0-UI.s1 /CLONE=UI-R-CA1-bja-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.59490.1 /TIER=ConsEnd /STK=2 /UG=Rn.59490 /UG_TITLE=ESTs BF399879 1381286_at BF411314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411314 /DB_XREF=gi:11399296 /DB_XREF=UI-R-CN0-bmj-a-01-0-UI.s1 /CLONE=UI-R-CN0-bmj-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.61833.1 /TIER=ConsEnd /STK=2 /UG=Rn.61833 /UG_TITLE=ESTs BF411314 hypothetical protein LOC100364387 LOC100364387 100364387 XM_002726004 /// XM_002726005 1381287_at BE099909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099909 /DB_XREF=gi:8491792 /DB_XREF=UI-R-BJ1-atl-e-10-0-UI.s1 /CLONE=UI-R-BJ1-atl-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.62613.1 /TIER=ConsEnd /STK=2 /UG=Rn.62613 /UG_TITLE=ESTs BE099909 1381288_at BI282543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282543 /DB_XREF=gi:14933417 /DB_XREF=UI-R-DD0-bzy-b-08-0-UI.s1 /CLONE=UI-R-DD0-bzy-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.63170.1 /TIER=ConsEnd /STK=2 /UG=Rn.63170 /UG_TITLE=ESTs BI282543 interleukin 1 family, member 5 (delta) Il1f5 311783 NM_001107814 0005615 // extracellular space // inferred from electronic annotation 0005152 // interleukin-1 receptor antagonist activity // inferred from electronic annotation 1381289_at BF405125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405125 /DB_XREF=gi:11393100 /DB_XREF=UI-R-CA1-biq-a-03-0-UI.s1 /CLONE=UI-R-CA1-biq-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.63309.1 /TIER=ConsEnd /STK=2 /UG=Rn.63309 /UG_TITLE=ESTs BF405125 HAUS augmin-like complex, subunit 8 Haus8 290626 NM_001024971 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0051225 // spindle assembly // not recorded /// 0051225 // spindle assembly // inferred from sequence or structural similarity /// 0051297 // centrosome organization // not recorded /// 0051297 // centrosome organization // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation 0000922 // spindle pole // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0070652 // HAUS complex // not recorded /// 0070652 // HAUS complex // inferred from sequence or structural similarity 1381290_at AI101288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101288 /DB_XREF=gi:3704625 /DB_XREF=EST210577 /CLONE=RBRBK81 /FEA=EST /CNT=2 /TID=Rn.27940.1 /TIER=ConsEnd /STK=2 /UG=Rn.27940 /UG_TITLE=ESTs AI101288 1381291_at BE106586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106586 /DB_XREF=gi:8498688 /DB_XREF=UI-R-BO1-asp-f-11-0-UI.s1 /CLONE=UI-R-BO1-asp-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.45585.1 /TIER=ConsEnd /STK=2 /UG=Rn.45585 /UG_TITLE=ESTs BE106586 Ash1 (absent, small, or homeotic)-like (Drosophila) Ash1l 310638 NM_001107689 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1381292_at BE095785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095785 /DB_XREF=gi:8486716 /DB_XREF=UI-R-BU0-aoz-d-07-0-UI.s1 /CLONE=UI-R-BU0-aoz-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.49364.1 /TIER=ConsEnd /STK=2 /UG=Rn.49364 /UG_TITLE=ESTs BE095785 1381293_at BE097087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097087 /DB_XREF=gi:8488018 /DB_XREF=UI-R-BO1-apt-a-04-0-UI.s1 /CLONE=UI-R-BO1-apt-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.49530.1 /TIER=ConsEnd /STK=2 /UG=Rn.49530 /UG_TITLE=ESTs BE097087 1381294_at BF409260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409260 /DB_XREF=gi:11397235 /DB_XREF=UI-R-BT1-bkn-h-12-0-UI.s1 /CLONE=UI-R-BT1-bkn-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.61296.1 /TIER=ConsEnd /STK=2 /UG=Rn.61296 /UG_TITLE=ESTs BF409260 1381295_at BF405442 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405442 /DB_XREF=gi:11393417 /DB_XREF=UI-R-CA1-bix-g-05-0-UI.s1 /CLONE=UI-R-CA1-bix-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.62416.1 /TIER=ConsEnd /STK=2 /UG=Rn.62416 /UG_TITLE=ESTs BF405442 1381296_at AA819045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819045 /DB_XREF=gi:4227710 /DB_XREF=UI-R-A0-ba-g-02-0-UI.s1 /CLONE=UI-R-A0-ba-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.33936.1 /TIER=ConsEnd /STK=2 /UG=Rn.33936 /UG_TITLE=ESTs AA819045 1381297_at BI292668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292668 /DB_XREF=gi:14953393 /DB_XREF=UI-R-DO0-ciw-l-15-0-UI.s1 /CLONE=UI-R-DO0-ciw-l-15-0-UI /FEA=EST /CNT=2 /TID=Rn.79333.1 /TIER=ConsEnd /STK=2 /UG=Rn.79333 /UG_TITLE=ESTs BI292668 Rho guanine nucleotide exchange factor (GEF) 5 Arhgef5 140898 XM_001073085 /// XM_342676 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1381298_at AI103253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103253 /DB_XREF=gi:3707815 /DB_XREF=EST212542 /CLONE=REMBZ11 /FEA=EST /CNT=2 /TID=Rn.23680.1 /TIER=ConsEnd /STK=2 /UG=Rn.23680 /UG_TITLE=ESTs AI103253 1381299_at AI454141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454141 /DB_XREF=gi:4291649 /DB_XREF=UI-R-BT0-pu-e-10-0-UI.s1 /CLONE=UI-R-BT0-pu-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.34980.1 /TIER=ConsEnd /STK=2 /UG=Rn.34980 /UG_TITLE=ESTs AI454141 1381300_at AI234603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234603 /DB_XREF=gi:3828109 /DB_XREF=EST231165 /CLONE=RLUDC06 /FEA=EST /CNT=2 /TID=Rn.39009.1 /TIER=ConsEnd /STK=2 /UG=Rn.39009 /UG_TITLE=ESTs AI234603 similar to RGD, leucine-rich repeat, tropomodulin and proline-rich containing protein RGD1562390 307797 XR_009042 /// XR_086094 1381301_at BF417811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417811 /DB_XREF=gi:11405800 /DB_XREF=UI-R-CN0-blx-e-05-0-UI.s1 /CLONE=UI-R-CN0-blx-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.50553.1 /TIER=ConsEnd /STK=2 /UG=Rn.50553 /UG_TITLE=ESTs BF417811 1381302_at BE119979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119979 /DB_XREF=gi:8512084 /DB_XREF=UI-R-CA0-bao-c-01-0-UI.s1 /CLONE=UI-R-CA0-bao-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.52188.1 /TIER=ConsEnd /STK=2 /UG=Rn.52188 /UG_TITLE=ESTs BE119979 1381303_at BE107070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107070 /DB_XREF=gi:8499175 /DB_XREF=UI-R-BS1-ayp-e-04-0-UI.s1 /CLONE=UI-R-BS1-ayp-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.53920.1 /TIER=ConsEnd /STK=2 /UG=Rn.53920 /UG_TITLE=ESTs BE107070 1381304_at BG375062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375062 /DB_XREF=gi:13299534 /DB_XREF=UI-R-CV1-bst-f-08-0-UI.s1 /CLONE=UI-R-CV1-bst-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.66280.1 /TIER=ConsEnd /STK=2 /UG=Rn.66280 /UG_TITLE=ESTs BG375062 Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) Smg7 360855 NM_001191549 /// XM_001071081 /// XM_002724873 /// XM_002728013 /// XM_341132 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051721 // protein phosphatase 2A binding // not recorded 1381305_at BM383011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383011 /DB_XREF=gi:18183064 /DB_XREF=UI-R-DS0-cje-e-13-0-UI.s1 /CLONE=UI-R-DS0-cje-e-13-0-UI /FEA=EST /CNT=2 /TID=Rn.30153.1 /TIER=ConsEnd /STK=2 /UG=Rn.30153 /UG_TITLE=ESTs BM383011 1381306_at AI013365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013365 /DB_XREF=gi:4133840 /DB_XREF=EST208040 /CLONE=RSPBK06 /FEA=EST /CNT=2 /TID=Rn.30695.1 /TIER=ConsEnd /STK=2 /UG=Rn.30695 /UG_TITLE=ESTs AI013365 1381307_at AI412008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412008 /DB_XREF=gi:4255512 /DB_XREF=EST240302 /CLONE=RKIEJ46 /FEA=EST /CNT=2 /TID=Rn.32754.1 /TIER=ConsEnd /STK=2 /UG=Rn.32754 /UG_TITLE=ESTs AI412008 1381308_at AI172180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172180 /DB_XREF=gi:3712220 /DB_XREF=EST218175 /CLONE=RMUBV92 /FEA=EST /CNT=2 /TID=Rn.33864.1 /TIER=ConsEnd /STK=2 /UG=Rn.33864 /UG_TITLE=ESTs AI172180 1381309_at AI453886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI453886 /DB_XREF=gi:4289861 /DB_XREF=UI-R-BT0-pu-a-01-0-UI.s1 /CLONE=UI-R-BT0-pu-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.34540.1 /TIER=ConsEnd /STK=2 /UG=Rn.34540 /UG_TITLE=ESTs AI453886 hypothetical protein LOC100361360 LOC100361360 100361360 XM_002728035 1381310_at BI296611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296611 /DB_XREF=gi:14961208 /DB_XREF=UI-R-CV2-cgt-c-04-0-UI.s1 /CLONE=UI-R-CV2-cgt-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.40760.1 /TIER=ConsEnd /STK=2 /UG=Rn.40760 /UG_TITLE=ESTs BI296611 hypothetical protein LOC691572 LOC691572 691572 XM_001078882 /// XM_002727068 1381311_at BE100625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100625 /DB_XREF=gi:8492522 /DB_XREF=UI-R-BJ1-auk-e-10-0-UI.s1 /CLONE=UI-R-BJ1-auk-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.43404.1 /TIER=ConsEnd /STK=2 /UG=Rn.43404 /UG_TITLE=ESTs, Weakly similar to calcium-independent alpha-latrotoxin receptor homolog 3; lectomedin-3 (Rattus norvegicus) (R.norvegicus) BE100625 EGF-like module containing, mucin-like, hormone receptor-like 1 Emr1 316137 NM_001007557 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1381312_at AW434668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434668 /DB_XREF=gi:6965975 /DB_XREF=UI-R-BJ0p-afi-g-10-0-UI.s1 /CLONE=UI-R-BJ0p-afi-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.54318.1 /TIER=ConsEnd /STK=2 /UG=Rn.54318 /UG_TITLE=ESTs AW434668 1381313_at BF398411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398411 /DB_XREF=gi:11383400 /DB_XREF=UI-R-BS2-beo-e-08-0-UI.s1 /CLONE=UI-R-BS2-beo-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.59064.1 /TIER=ConsEnd /STK=2 /UG=Rn.59064 /UG_TITLE=ESTs BF398411 1381314_at BE119779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119779 /DB_XREF=gi:8511884 /DB_XREF=UI-R-CA0-bai-h-10-0-UI.s1 /CLONE=UI-R-CA0-bai-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.61926.1 /TIER=ConsEnd /STK=2 /UG=Rn.61926 /UG_TITLE=ESTs BE119779 1381315_at BM386292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386292 /DB_XREF=gi:18186345 /DB_XREF=UI-R-CN1-cjf-d-21-0-UI.s1 /CLONE=UI-R-CN1-cjf-d-21-0-UI /FEA=EST /CNT=2 /TID=Rn.81747.1 /TIER=ConsEnd /STK=2 /UG=Rn.81747 /UG_TITLE=ESTs BM386292 1381316_at BF388256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388256 /DB_XREF=gi:11373080 /DB_XREF=UI-R-CA1-bbz-b-04-0-UI.s1 /CLONE=UI-R-CA1-bbz-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.28064.1 /TIER=ConsEnd /STK=2 /UG=Rn.28064 /UG_TITLE=ESTs BF388256 1381317_at BF400206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400206 /DB_XREF=gi:11385217 /DB_XREF=UI-R-CA1-bjc-o-10-0-UI.s1 /CLONE=UI-R-CA1-bjc-o-10-0-UI /FEA=EST /CNT=2 /TID=Rn.33665.1 /TIER=ConsEnd /STK=2 /UG=Rn.33665 /UG_TITLE=ESTs BF400206 1381318_at AI639227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639227 /DB_XREF=gi:4700261 /DB_XREF=rx05160s /CLONE=rx05160 /FEA=EST /CNT=2 /TID=Rn.43692.1 /TIER=ConsEnd /STK=2 /UG=Rn.43692 /UG_TITLE=ESTs, Weakly similar to 2201442A chitotriosidase (H.sapiens) AI639227 chitinase, acidic Chia 113901 NM_207586 0000272 // polysaccharide catabolic process // inferred from electronic annotation /// 0002532 // production of molecular mediator involved in inflammatory response // not recorded /// 0002532 // production of molecular mediator involved in inflammatory response // inferred from sequence or structural similarity /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006030 // chitin metabolic process // inferred from electronic annotation /// 0006032 // chitin catabolic process // not recorded /// 0006032 // chitin catabolic process // inferred from sequence or structural similarity /// 0006032 // chitin catabolic process // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0090197 // positive regulation of chemokine secretion // not recorded /// 0090197 // positive regulation of chemokine secretion // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004568 // chitinase activity // not recorded /// 0004568 // chitinase activity // inferred from sequence or structural similarity /// 0004568 // chitinase activity // inferred from electronic annotation /// 0005129 // granulocyte macrophage colony-stimulating factor receptor binding // inferred from electronic annotation /// 0008061 // chitin binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0019900 // kinase binding // not recorded /// 0043169 // cation binding // inferred from electronic annotation 1381319_at BF407155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407155 /DB_XREF=gi:11395130 /DB_XREF=UI-R-BJ2-bqw-c-11-0-UI.s1 /CLONE=UI-R-BJ2-bqw-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.47234.1 /TIER=ConsEnd /STK=2 /UG=Rn.47234 /UG_TITLE=ESTs BF407155 1381320_at BF386936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386936 /DB_XREF=gi:11371760 /DB_XREF=UI-R-CA1-bbj-c-09-0-UI.s1 /CLONE=UI-R-CA1-bbj-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.50432.1 /TIER=ConsEnd /STK=2 /UG=Rn.50432 /UG_TITLE=ESTs BF386936 1381321_at BE113257 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113257 /DB_XREF=gi:8505362 /DB_XREF=UI-R-BJ1-awd-d-02-0-UI.s1 /CLONE=UI-R-BJ1-awd-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.52168.1 /TIER=ConsEnd /STK=2 /UG=Rn.52168 /UG_TITLE=ESTs BE113257 1381322_at BF402728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402728 /DB_XREF=gi:11390703 /DB_XREF=UI-R-CA0-bho-h-07-0-UI.s1 /CLONE=UI-R-CA0-bho-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.60119.1 /TIER=ConsEnd /STK=2 /UG=Rn.60119 /UG_TITLE=ESTs BF402728 1381323_at BG381396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381396 /DB_XREF=gi:13305868 /DB_XREF=UI-R-CS0-btt-g-09-0-UI.s1 /CLONE=UI-R-CS0-btt-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.65765.1 /TIER=ConsEnd /STK=2 /UG=Rn.65765 /UG_TITLE=ESTs BG381396 retinoblastoma binding protein 5 Rbbp5 304794 NM_001107174 0043627 // response to estrogen stimulus // not recorded /// 0051568 // histone H3-K4 methylation // not recorded 0005634 // nucleus // not recorded /// 0035097 // histone methyltransferase complex // not recorded /// 0071339 // MLL1 complex // not recorded 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0042800 // histone methyltransferase activity (H3-K4 specific) // not recorded 1381324_at BM387030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387030 /DB_XREF=gi:18187083 /DB_XREF=UI-R-CN1-cji-a-02-0-UI.s1 /CLONE=UI-R-CN1-cji-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.68162.1 /TIER=ConsEnd /STK=2 /UG=Rn.68162 /UG_TITLE=ESTs BM387030 1381325_at BE097765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097765 /DB_XREF=gi:8488696 /DB_XREF=UI-R-BO1-aqb-e-03-0-UI.s1 /CLONE=UI-R-BO1-aqb-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.6829.1 /TIER=ConsEnd /STK=2 /UG=Rn.6829 /UG_TITLE=ESTs BE097765 1381326_at AI013440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013440 /DB_XREF=gi:3227496 /DB_XREF=EST208115 /CLONE=RSPBL57 /FEA=EST /CNT=2 /TID=Rn.18001.1 /TIER=ConsEnd /STK=2 /UG=Rn.18001 /UG_TITLE=ESTs AI013440 1381327_a_at AI556056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556056 /DB_XREF=gi:4488419 /DB_XREF=UI-R-C2p-re-d-11-0-UI.s1 /CLONE=UI-R-C2p-re-d-11-0-UI /FEA=EST /CNT=1 /TID=Rn.23490.2 /TIER=ConsEnd /STK=0 /UG=Rn.23490 /UG_TITLE=ESTs, Weakly similar to JC2054 complement regulatory protein, 5I2 antigen precursor - rat (R.norvegicus) AI556056 complement receptor 2 Cr2 289395 NM_001105989 0002430 // complement receptor mediated signaling pathway // not recorded /// 0007165 // signal transduction // not recorded /// 0042113 // B cell activation // not recorded 0009897 // external side of plasma membrane // not recorded 0004872 // receptor activity // not recorded /// 0004875 // complement receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1381328_at AI177373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177373 /DB_XREF=gi:4134979 /DB_XREF=EST220993 /CLONE=RPLBY31 /FEA=EST /CNT=2 /TID=Rn.23490.1 /TIER=ConsEnd /STK=2 /UG=Rn.23490 /UG_TITLE=ESTs, Weakly similar to JC2054 complement regulatory protein, 5I2 antigen precursor - rat (R.norvegicus) AI177373 complement receptor 2 Cr2 289395 NM_001105989 0002430 // complement receptor mediated signaling pathway // not recorded /// 0007165 // signal transduction // not recorded /// 0042113 // B cell activation // not recorded 0009897 // external side of plasma membrane // not recorded 0004872 // receptor activity // not recorded /// 0004875 // complement receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1381329_at AI111816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111816 /DB_XREF=gi:3511765 /DB_XREF=UI-R-Y0-mf-f-08-0-UI.s1 /CLONE=UI-R-Y0-mf-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.26648.1 /TIER=ConsEnd /STK=2 /UG=Rn.26648 /UG_TITLE=ESTs AI111816 1381330_at AI763958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763958 /DB_XREF=gi:5209893 /DB_XREF=UI-R-Y0-acv-b-08-0-UI.s1 /CLONE=UI-R-Y0-acv-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.41948.1 /TIER=ConsEnd /STK=2 /UG=Rn.41948 /UG_TITLE=ESTs AI763958 1381331_at AI638953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI638953 /DB_XREF=gi:4699987 /DB_XREF=rx03249s /CLONE=rx03249 /FEA=EST /CNT=2 /TID=Rn.43498.1 /TIER=ConsEnd /STK=2 /UG=Rn.43498 /UG_TITLE=ESTs AI638953 CKLF-like MARVEL transmembrane domain containing 2A Cmtm2a 307616 NM_001013142 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1381332_at BE101791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101791 /DB_XREF=gi:8493889 /DB_XREF=UI-R-BT1-aqh-d-09-0-UI.s1 /CLONE=UI-R-BT1-aqh-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.49571.1 /TIER=ConsEnd /STK=2 /UG=Rn.49571 /UG_TITLE=ESTs BE101791 1381333_at BI294382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294382 /DB_XREF=gi:14956787 /DB_XREF=UI-R-DK0-cei-b-08-0-UI.s1 /CLONE=UI-R-DK0-cei-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.50074.1 /TIER=ConsEnd /STK=2 /UG=Rn.50074 /UG_TITLE=ESTs BI294382 1381334_at BF388684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388684 /DB_XREF=gi:11373508 /DB_XREF=UI-R-BS2-bdb-d-02-0-UI.s1 /CLONE=UI-R-BS2-bdb-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.66679.1 /TIER=ConsEnd /STK=2 /UG=Rn.66679 /UG_TITLE=ESTs BF388684 1381335_at BE349658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE349658 /DB_XREF=gi:9261511 /DB_XREF=hq41c08.x1 /CLONE=IMAGE:3121934 /FEA=EST /CNT=2 /TID=Rn.78443.1 /TIER=ConsEnd /STK=2 /UG=Rn.78443 /UG_TITLE=ESTs BE349658 1381336_at BF408248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408248 /DB_XREF=gi:11396263 /DB_XREF=UI-R-BJ2-brb-a-05-0-UI.s1 /CLONE=UI-R-BJ2-brb-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.14788.1 /TIER=ConsEnd /STK=2 /UG=Rn.14788 /UG_TITLE=ESTs BF408248 1381337_at AI029774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029774 /DB_XREF=gi:4300882 /DB_XREF=UI-R-C0-iz-d-03-0-UI.s1 /CLONE=UI-R-C0-iz-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.17367.1 /TIER=ConsEnd /STK=2 /UG=Rn.17367 /UG_TITLE=ESTs AI029774 1381338_at AI008973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008973 /DB_XREF=gi:3222805 /DB_XREF=EST203424 /CLONE=REMBG45 /FEA=EST /CNT=2 /TID=Rn.22941.1 /TIER=ConsEnd /STK=2 /UG=Rn.22941 /UG_TITLE=ESTs AI008973 1381339_at AI113218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113218 /DB_XREF=gi:3513167 /DB_XREF=UI-R-C2p-np-h-11-0-UI.s1 /CLONE=UI-R-C2p-np-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.26952.1 /TIER=ConsEnd /STK=2 /UG=Rn.26952 /UG_TITLE=ESTs AI113218 Eukaryotic translation initiation factor 3, subunit K Eif3k 292762 NM_001106242 0006413 // translational initiation // not recorded /// 0006413 // translational initiation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003743 // translation initiation factor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043022 // ribosome binding // inferred from electronic annotation 1381340_at BE119655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119655 /DB_XREF=gi:8511760 /DB_XREF=UI-R-CA0-baz-d-08-0-UI.s1 /CLONE=UI-R-CA0-baz-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.41597.1 /TIER=ConsEnd /STK=2 /UG=Rn.41597 /UG_TITLE=ESTs BE119655 radial spoke head 10 homolog B (Chlamydomonas) Rsph10b 288478 NM_001013867 1381341_at BE111796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111796 /DB_XREF=gi:8503901 /DB_XREF=UI-R-BJ1-avx-h-07-0-UI.s1 /CLONE=UI-R-BJ1-avx-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.43698.1 /TIER=ConsEnd /STK=2 /UG=Rn.43698 /UG_TITLE=ESTs BE111796 1381342_at BE109825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109825 /DB_XREF=gi:8501930 /DB_XREF=UI-R-BJ1-aul-g-06-0-UI.s1 /CLONE=UI-R-BJ1-aul-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.49207.1 /TIER=ConsEnd /STK=2 /UG=Rn.49207 /UG_TITLE=ESTs BE109825 1381343_at BF402574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402574 /DB_XREF=gi:11390549 /DB_XREF=UI-R-CA0-bhm-a-04-0-UI.s1 /CLONE=UI-R-CA0-bhm-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.57673.1 /TIER=ConsEnd /STK=2 /UG=Rn.57673 /UG_TITLE=ESTs BF402574 1381344_at BF394536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394536 /DB_XREF=gi:11379402 /DB_XREF=UI-R-CA0-bfx-a-04-0-UI.s1 /CLONE=UI-R-CA0-bfx-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.58299.1 /TIER=ConsEnd /STK=2 /UG=Rn.58299 /UG_TITLE=ESTs BF394536 1381345_at BF403393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403393 /DB_XREF=gi:11391408 /DB_XREF=UI-R-CA1-biy-j-11-0-UI.s1 /CLONE=UI-R-CA1-biy-j-11-0-UI /FEA=EST /CNT=2 /TID=Rn.60171.1 /TIER=ConsEnd /STK=2 /UG=Rn.60171 /UG_TITLE=ESTs BF403393 1381346_at BE096771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096771 /DB_XREF=gi:8487702 /DB_XREF=UI-R-BU0-apm-f-09-0-UI.s1 /CLONE=UI-R-BU0-apm-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.63705.1 /TIER=ConsEnd /STK=2 /UG=Rn.63705 /UG_TITLE=ESTs BE096771 1381347_at AI178745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178745 /DB_XREF=gi:3729383 /DB_XREF=EST222427 /CLONE=RSPBK55 /FEA=EST /CNT=2 /TID=Rn.12899.1 /TIER=ConsEnd /STK=2 /UG=Rn.12899 /UG_TITLE=ESTs, Weakly similar to Y141_HUMAN HYPOTHETICAL PROTEIN KIAA0141 (H.sapiens) AI178745 1381348_at AI070572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070572 /DB_XREF=gi:3396823 /DB_XREF=UI-R-C2-mr-b-04-0-UI.s1 /CLONE=UI-R-C2-mr-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.19788.1 /TIER=ConsEnd /STK=2 /UG=Rn.19788 /UG_TITLE=ESTs AI070572 1381349_a_at AI231906 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231906 /DB_XREF=gi:3815786 /DB_XREF=EST228594 /CLONE=RHECP71 /FEA=EST /CNT=2 /TID=Rn.23769.1 /TIER=ConsEnd /STK=2 /UG=Rn.23769 /UG_TITLE=ESTs, Weakly similar to T14318 ubiquitin-protein ligase E3-alpha - mouse (M.musculus) AI231906 similar to ubiquitin protein ligase E3 component n-recognin 2 LOC363188 363188 NM_001178071 /// XM_001061882 /// XM_002730019 0030163 // protein catabolic process // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1381350_at AI317824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI317824 /DB_XREF=gi:4033091 /DB_XREF=EST234495 /CLONE=RPPAA32 /FEA=EST /CNT=2 /TID=Rn.29944.1 /TIER=ConsEnd /STK=2 /UG=Rn.29944 /UG_TITLE=ESTs AI317824 1381351_at AI599264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599264 /DB_XREF=gi:4608312 /DB_XREF=EST250967 /CLONE=REMEP59 /FEA=EST /CNT=2 /TID=Rn.33295.1 /TIER=ConsEnd /STK=2 /UG=Rn.33295 /UG_TITLE=ESTs AI599264 1381352_at BE106849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106849 /DB_XREF=gi:8498951 /DB_XREF=UI-R-BT1-ast-h-08-0-UI.s1 /CLONE=UI-R-BT1-ast-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.51059.1 /TIER=ConsEnd /STK=2 /UG=Rn.51059 /UG_TITLE=ESTs, Weakly similar to LIS1 MOUSE PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB ALPHA SUBUNIT (R.norvegicus) BE106849 WD repeat domain 38 Wdr38 366035 XM_575125 1381353_at AI179244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179244 /DB_XREF=gi:3729882 /DB_XREF=EST222935 /CLONE=RSPCE20 /FEA=EST /CNT=2 /TID=Rn.54113.1 /TIER=ConsEnd /STK=2 /UG=Rn.54113 /UG_TITLE=ESTs AI179244 similar to melanoma antigen family A, 5 MGC114427 317297 NM_001024893 1381354_at BF403728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403728 /DB_XREF=gi:11391703 /DB_XREF=UI-R-CA1-bjc-b-06-0-UI.s1 /CLONE=UI-R-CA1-bjc-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.60220.1 /TIER=ConsEnd /STK=2 /UG=Rn.60220 /UG_TITLE=ESTs BF403728 1381355_at BG377715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377715 /DB_XREF=gi:13302187 /DB_XREF=UI-R-CU0-bva-b-10-0-UI.s1 /CLONE=UI-R-CU0-bva-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.65835.1 /TIER=ConsEnd /STK=2 /UG=Rn.65835 /UG_TITLE=ESTs BG377715 Meckel syndrome, type 1 Mks1 287612 NM_001034917 0042384 // cilium assembly // inferred from electronic annotation /// 0042384 // cilium assembly // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0005932 // microtubule basal body // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1381356_at AI639262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639262 /DB_XREF=gi:4700296 /DB_XREF=rx04179s /CLONE=rx04179 /FEA=EST /CNT=2 /TID=Rn.15746.1 /TIER=ConsEnd /STK=2 /UG=Rn.15746 /UG_TITLE=ESTs AI639262 family with sequence similarity 63, member B Fam63b 363089 XM_001054973 /// XM_002727085 /// XM_002729937 /// XM_343420 1381357_at AI176755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176755 /DB_XREF=gi:3727393 /DB_XREF=EST220349 /CLONE=ROVBW41 /FEA=EST /CNT=2 /TID=Rn.16619.1 /TIER=ConsEnd /STK=2 /UG=Rn.16619 /UG_TITLE=ESTs, Moderately similar to PTN8 MOUSE HEMATOPOIETIC CELL PROTEIN-TYROSINE PHOSPHATASE 70Z-PEP (M.musculus) AI176755 protein tyrosine phosphatase, non-receptor type 22 (lymphoid) Ptpn22 295338 NM_001106460 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030217 // T cell differentiation // not recorded /// 0050852 // T cell receptor signaling pathway // not recorded /// 0050860 // negative regulation of T cell receptor signaling pathway // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1381358_at BI299064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299064 /DB_XREF=gi:14975344 /DB_XREF=UI-R-CV2-chq-g-07-0-UI.s1 /CLONE=UI-R-CV2-chq-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.45946.1 /TIER=ConsEnd /STK=2 /UG=Rn.45946 /UG_TITLE=ESTs BI299064 AP2 associated kinase 1 Aak1 500244 NM_001173450 /// XM_001070331 /// XM_575594 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005905 // coated pit // inferred from electronic annotation /// 0071439 // clathrin complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1381359_at AI102874 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102874 /DB_XREF=gi:3707529 /DB_XREF=EST212163 /CLONE=REMBU03 /FEA=EST /CNT=2 /TID=Rn.23635.1 /TIER=ConsEnd /STK=2 /UG=Rn.23635 /UG_TITLE=ESTs AI102874 1381360_at BE097516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097516 /DB_XREF=gi:8488447 /DB_XREF=UI-R-BO1-apy-d-07-0-UI.s1 /CLONE=UI-R-BO1-apy-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.49629.1 /TIER=ConsEnd /STK=2 /UG=Rn.49629 /UG_TITLE=ESTs BE097516 1381361_at BE119364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119364 /DB_XREF=gi:8511469 /DB_XREF=UI-R-CA0-bah-f-09-0-UI.s1 /CLONE=UI-R-CA0-bah-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.61910.1 /TIER=ConsEnd /STK=2 /UG=Rn.61910 /UG_TITLE=ESTs BE119364 1381362_at AW534230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534230 /DB_XREF=gi:7176644 /DB_XREF=UI-R-C4-alq-g-12-0-UI.s1 /CLONE=UI-R-C4-alq-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.20641.1 /TIER=ConsEnd /STK=2 /UG=Rn.20641 /UG_TITLE=ESTs AW534230 similar to CG8272-PA LOC502201 502201 XM_001075557 /// XM_577662 0005515 // protein binding // inferred from electronic annotation 1381363_at BF388580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388580 /DB_XREF=gi:11373404 /DB_XREF=UI-R-BS2-bdd-b-07-0-UI.s1 /CLONE=UI-R-BS2-bdd-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.32960.1 /TIER=ConsEnd /STK=2 /UG=Rn.32960 /UG_TITLE=ESTs BF388580 1381364_at BE116070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116070 /DB_XREF=gi:8508175 /DB_XREF=UI-R-BS1-axz-b-03-0-UI.s1 /CLONE=UI-R-BS1-axz-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.45619.1 /TIER=ConsEnd /STK=2 /UG=Rn.45619 /UG_TITLE=ESTs BE116070 transportin 1 Tnpo1 309126 XM_001070389 /// XM_219500 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1381365_at AW535275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535275 /DB_XREF=gi:7177689 /DB_XREF=UI-R-C4-alv-c-05-0-UI.s1 /CLONE=UI-R-C4-alv-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.46927.1 /TIER=ConsEnd /STK=2 /UG=Rn.46927 /UG_TITLE=ESTs, Highly similar to CCAA RAT VOLTAGE-DEPENDENT PQ-TYPE CALCIUM CHANNEL ALPHA-1A SUBUNIT (R.norvegicus) AW535275 1381366_at BE109426 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109426 /DB_XREF=gi:8501531 /DB_XREF=UI-R-BJ1-aut-a-04-0-UI.s1 /CLONE=UI-R-BJ1-aut-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.49123.1 /TIER=ConsEnd /STK=2 /UG=Rn.49123 /UG_TITLE=ESTs BE109426 similar to hypothetical protein FLJ21415 RGD1562310 498188 NM_001109066 1381367_at BF386721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386721 /DB_XREF=gi:11371545 /DB_XREF=UI-R-CA1-bbg-f-11-0-UI.s1 /CLONE=UI-R-CA1-bbg-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.62873.1 /TIER=ConsEnd /STK=2 /UG=Rn.62873 /UG_TITLE=ESTs, Highly similar to ALR RAT AUGMENTER OF LIVER REGENERATION (R.norvegicus) BF386721 1381368_at BF416738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416738 /DB_XREF=gi:11404689 /DB_XREF=UI-R-CA0-bku-h-01-0-UI.s1 /CLONE=UI-R-CA0-bku-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.63123.1 /TIER=ConsEnd /STK=2 /UG=Rn.63123 /UG_TITLE=ESTs BF416738 1381369_at AI412508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412508 /DB_XREF=gi:4256012 /DB_XREF=EST240807 /CLONE=RBRDW26 /FEA=EST /CNT=2 /TID=Rn.28574.1 /TIER=ConsEnd /STK=2 /UG=Rn.28574 /UG_TITLE=ESTs AI412508 leucine-rich repeat LGI family, member 3 Lgi3 306013 NM_001107277 0017157 // regulation of exocytosis // not recorded 0008021 // synaptic vesicle // not recorded /// 0019717 // synaptosome // not recorded 0005515 // protein binding // not recorded 1381370_at AW254502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254502 /DB_XREF=gi:6598093 /DB_XREF=UI-R-BJ0-aej-a-01-0-UI.s1 /CLONE=UI-R-BJ0-aej-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.40711.1 /TIER=ConsEnd /STK=2 /UG=Rn.40711 /UG_TITLE=ESTs AW254502 1381371_at BF389499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389499 /DB_XREF=gi:11374334 /DB_XREF=UI-R-CJ0-bfc-e-01-0-UI.s1 /CLONE=UI-R-CJ0-bfc-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.59996.1 /TIER=ConsEnd /STK=2 /UG=Rn.59996 /UG_TITLE=ESTs BF389499 1381372_at AI235395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235395 /DB_XREF=gi:3828901 /DB_XREF=EST231957 /CLONE=ROVCR32 /FEA=EST /CNT=2 /TID=Rn.62151.1 /TIER=ConsEnd /STK=2 /UG=Rn.62151 /UG_TITLE=ESTs AI235395 Centrosomal protein 76kDa Cep76 291540 NM_001100514 0046599 // regulation of centriole replication // inferred from electronic annotation /// 0046599 // regulation of centriole replication // not recorded 0005814 // centriole // inferred from electronic annotation /// 0005814 // centriole // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1381373_at BF403624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403624 /DB_XREF=gi:11391599 /DB_XREF=UI-R-CA1-bjd-n-08-0-UI.s1 /CLONE=UI-R-CA1-bjd-n-08-0-UI /FEA=EST /CNT=2 /TID=Rn.62855.1 /TIER=ConsEnd /STK=2 /UG=Rn.62855 /UG_TITLE=ESTs BF403624 zona pellucida binding protein 2 Zpbp2 363676 NM_001007011 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 1381374_at AI058424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058424 /DB_XREF=gi:3332201 /DB_XREF=UI-R-C1-kn-b-12-0-UI.s1 /CLONE=UI-R-C1-kn-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.18873.1 /TIER=ConsEnd /STK=2 /UG=Rn.18873 /UG_TITLE=ESTs AI058424 leucine-rich repeat LGI family, member 4 Lgi4 361549 NM_199499 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0022011 // myelination in peripheral nervous system // inferred from electronic annotation /// 0022011 // myelination in peripheral nervous system // not recorded /// 0042551 // neuron maturation // inferred from electronic annotation /// 0042551 // neuron maturation // not recorded /// 0042552 // myelination // not recorded /// 0042552 // myelination // inferred from electronic annotation 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005515 // protein binding // inferred from electronic annotation 1381375_at AI232664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232664 /DB_XREF=gi:3816544 /DB_XREF=EST229352 /CLONE=RKICE86 /FEA=EST /CNT=2 /TID=Rn.24001.1 /TIER=ConsEnd /STK=2 /UG=Rn.24001 /UG_TITLE=ESTs AI232664 1381376_at AI103284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103284 /DB_XREF=gi:3707843 /DB_XREF=EST212573 /CLONE=REMBZ67 /FEA=EST /CNT=2 /TID=Rn.34387.1 /TIER=ConsEnd /STK=2 /UG=Rn.34387 /UG_TITLE=ESTs, Highly similar to I49523 Mouse primary response gene B94 mRNA, 3end - mouse (M.musculus) AI103284 tumor necrosis factor, alpha-induced protein 2 Tnfaip2 299339 NM_001137633 1381377_at AI178302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178302 /DB_XREF=gi:3728940 /DB_XREF=EST221970 /CLONE=RPLCO71 /FEA=EST /CNT=2 /TID=Rn.38807.1 /TIER=ConsEnd /STK=2 /UG=Rn.38807 /UG_TITLE=ESTs AI178302 1381378_at AI407707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407707 /DB_XREF=gi:4251211 /DB_XREF=EST235997 /CLONE=ROVEB42 /FEA=EST /CNT=2 /TID=Rn.44999.1 /TIER=ConsEnd /STK=2 /UG=Rn.44999 /UG_TITLE=ESTs, Highly similar to TF1A MOUSE TRANSCRIPTION INTERMEDIARY FACTOR 1-ALPHA (M.musculus) AI407707 1381379_at BE099536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099536 /DB_XREF=gi:8491414 /DB_XREF=UI-R-BJ1-atj-e-04-0-UI.s1 /CLONE=UI-R-BJ1-atj-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.45502.1 /TIER=ConsEnd /STK=2 /UG=Rn.45502 /UG_TITLE=ESTs BE099536 1381380_at BG376534 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376534 /DB_XREF=gi:13301006 /DB_XREF=UI-R-CT0-bup-f-04-0-UI.s1 /CLONE=UI-R-CT0-bup-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.56351.1 /TIER=ConsEnd /STK=2 /UG=Rn.56351 /UG_TITLE=ESTs BG376534 1381381_at BF416088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416088 /DB_XREF=gi:11404077 /DB_XREF=UI-R-CA0-bkq-b-03-0-UI.s1 /CLONE=UI-R-CA0-bkq-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.62918.1 /TIER=ConsEnd /STK=2 /UG=Rn.62918 /UG_TITLE=ESTs BF416088 1381382_at AW433978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433978 /DB_XREF=gi:6965285 /DB_XREF=UI-R-BJ0p-afn-g-11-0-UI.s1 /CLONE=UI-R-BJ0p-afn-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.33019.1 /TIER=ConsEnd /STK=2 /UG=Rn.33019 /UG_TITLE=ESTs, Weakly similar to VAS1_RAT VACUOLAR ATP SYNTHASE SUBUNIT S1 PRECURSOR (V-ATPASE S1 SUBUNIT) (V-ATPASE S1 ACCESSORY PROTEIN) (V-ATPASE AC45 SUBUNIT) (C7-1 PROTEIN) (R.norvegicus) AW433978 ATPase, H+ transporting, lysosomal accessory protein 1-like Atp6ap1l 361875 NM_001191843 /// XM_001065086 /// XM_342169 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0033180 // proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation 0046933 // hydrogen ion transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 1381383_at AW434151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434151 /DB_XREF=gi:6965458 /DB_XREF=UI-R-BJ0p-afd-g-09-0-UI.s1 /CLONE=UI-R-BJ0p-afd-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.44674.1 /TIER=ConsEnd /STK=2 /UG=Rn.44674 /UG_TITLE=ESTs AW434151 1381384_at AW530069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530069 /DB_XREF=gi:7172483 /DB_XREF=UI-R-C4-ald-c-02-0-UI.s1 /CLONE=UI-R-C4-ald-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.34792.1 /TIER=ConsEnd /STK=2 /UG=Rn.34792 /UG_TITLE=ESTs, Weakly similar to T27158 hypothetical protein Y54E5A.1 - Caenorhabditis elegans (fragment) (C.elegans) AW530069 1381385_at AI579106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI579106 /DB_XREF=gi:4563482 /DB_XREF=UI-R-AG0-wv-b-04-0-UI.s1 /CLONE=UI-R-AG0-wv-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.44917.1 /TIER=ConsEnd /STK=2 /UG=Rn.44917 /UG_TITLE=ESTs AI579106 CREB/ATF bZIP transcription factor Crebzf 293112 NM_001106279 0006350 // transcription // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0009615 // response to virus // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0045814 // negative regulation of gene expression, epigenetic // not recorded /// 0051090 // regulation of transcription factor activity // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1381386_at AI407297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407297 /DB_XREF=gi:4250801 /DB_XREF=EST235585 /CLONE=ROVDQ69 /FEA=EST /CNT=2 /TID=Rn.44996.1 /TIER=ConsEnd /STK=2 /UG=Rn.44996 /UG_TITLE=ESTs AI407297 Processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae) Pop5 117241 NM_001105752 0008033 // tRNA processing // inferred from electronic annotation /// 0008033 // tRNA processing // not recorded /// 0016070 // RNA metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005655 // nucleolar ribonuclease P complex // not recorded 0004526 // ribonuclease P activity // inferred from electronic annotation /// 0004526 // ribonuclease P activity // not recorded /// 0004540 // ribonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1381387_at BI288963 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288963 /DB_XREF=gi:14946050 /DB_XREF=UI-R-DK0-cdi-g-04-0-UI.s1 /CLONE=UI-R-DK0-cdi-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.52153.1 /TIER=ConsEnd /STK=2 /UG=Rn.52153 /UG_TITLE=ESTs BI288963 1381388_at BF419626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419626 /DB_XREF=gi:11407615 /DB_XREF=UI-R-CA0-bpe-d-03-0-UI.s1 /CLONE=UI-R-CA0-bpe-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.63588.1 /TIER=ConsEnd /STK=2 /UG=Rn.63588 /UG_TITLE=ESTs BF419626 coiled-coil domain containing 19 Ccdc19 304984 NM_001024882 1381389_at AA965029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965029 /DB_XREF=gi:4279903 /DB_XREF=UI-R-C0-ha-e-06-0-UI.s1 /CLONE=UI-R-C0-ha-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.22560.1 /TIER=ConsEnd /STK=2 /UG=Rn.22560 /UG_TITLE=ESTs AA965029 1381390_at AI409144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409144 /DB_XREF=gi:4252648 /DB_XREF=EST237436 /CLONE=ROVEO14 /FEA=EST /CNT=2 /TID=Rn.26867.1 /TIER=ConsEnd /STK=2 /UG=Rn.26867 /UG_TITLE=ESTs AI409144 consortin, connexin sorting protein Cnst 498297 XM_001060344 /// XM_573525 0042998 // positive regulation of Golgi to plasma membrane protein transport // not recorded 0005802 // trans-Golgi network // not recorded /// 0005886 // plasma membrane // not recorded /// 0030133 // transport vesicle // not recorded /// 0043234 // protein complex // not recorded 0005515 // protein binding // not recorded /// 0071253 // connexin binding // not recorded 1381391_at BI288583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288583 /DB_XREF=gi:14945312 /DB_XREF=UI-R-DK0-cdg-e-11-0-UI.s1 /CLONE=UI-R-DK0-cdg-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.43287.1 /TIER=ConsEnd /STK=2 /UG=Rn.43287 /UG_TITLE=ESTs BI288583 hypothetical LOC287798 MGC95210 287798 NM_001005532 1381392_at BF387435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387435 /DB_XREF=gi:11372259 /DB_XREF=UI-R-CA1-bbm-d-08-0-UI.s1 /CLONE=UI-R-CA1-bbm-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.63564.1 /TIER=ConsEnd /STK=2 /UG=Rn.63564 /UG_TITLE=ESTs BF387435 1381393_at BI301735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301735 /DB_XREF=gi:14978015 /DB_XREF=UI-R-DL0-cin-h-23-0-UI.s1 /CLONE=UI-R-DL0-cin-h-23-0-UI /FEA=EST /CNT=2 /TID=Rn.77066.1 /TIER=ConsEnd /STK=2 /UG=Rn.77066 /UG_TITLE=ESTs BI301735 1381394_at BM388706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388706 /DB_XREF=gi:18188759 /DB_XREF=UI-R-DZ0-ckm-h-18-0-UI.s1 /CLONE=UI-R-DZ0-ckm-h-18-0-UI /FEA=EST /CNT=2 /TID=Rn.82194.1 /TIER=ConsEnd /STK=2 /UG=Rn.82194 /UG_TITLE=ESTs, Weakly similar to tyrosine phosphatase (M.musculus) BM388706 sorting nexin family member 27 Snx27 260323 NM_001110151 /// NM_152847 0006810 // transport // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007399 // nervous system development // non-traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1381395_at AA998067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998067 /DB_XREF=gi:4287284 /DB_XREF=UI-R-C0-id-d-04-0-UI.s1 /CLONE=UI-R-C0-id-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.22556.1 /TIER=ConsEnd /STK=2 /UG=Rn.22556 /UG_TITLE=ESTs, Weakly similar to S25288 BTEB protein - rat (R.norvegicus) AA998067 Kruppel-like factor 15 Klf15 85497 NM_053536 0015758 // glucose transport // not recorded /// 0015758 // glucose transport // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1381396_s_at AA998067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998067 /DB_XREF=gi:4287284 /DB_XREF=UI-R-C0-id-d-04-0-UI.s1 /CLONE=UI-R-C0-id-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.22556.1 /TIER=ConsEnd /STK=2 /UG=Rn.22556 /UG_TITLE=ESTs, Weakly similar to S25288 BTEB protein - rat (R.norvegicus) AA998067 Kruppel-like factor 15 Klf15 85497 NM_053536 0015758 // glucose transport // not recorded /// 0015758 // glucose transport // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1381397_at AI137355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137355 /DB_XREF=gi:3638132 /DB_XREF=UI-R-C2p-og-d-01-0-UI.s1 /CLONE=UI-R-C2p-og-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.27398.1 /TIER=ConsEnd /STK=2 /UG=Rn.27398 /UG_TITLE=ESTs AI137355 1381398_at BE329202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329202 /DB_XREF=gi:9202978 /DB_XREF=hq38c02.x1 /CLONE=IMAGE:3121634 /FEA=EST /CNT=2 /TID=Rn.54026.1 /TIER=ConsEnd /STK=2 /UG=Rn.54026 /UG_TITLE=ESTs, Moderately similar to CYTS RAT CYSTATIN S PRECURSOR (R.norvegicus) BE329202 cystatin-S-like /// similar to Cystatin S precursor (LM protein) /// similar to Cystatin S precursor (LM protein) LOC100366013 /// LOC689212 /// RGD1560483 100366013 /// 296516 /// 689212 XM_002726241 /// XM_231013 /// XR_085796 /// XR_086212 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1381399_at BG381338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381338 /DB_XREF=gi:13305810 /DB_XREF=UI-R-CS0-btt-a-04-0-UI.s1 /CLONE=UI-R-CS0-btt-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.65053.1 /TIER=ConsEnd /STK=2 /UG=Rn.65053 /UG_TITLE=ESTs BG381338 similar to ribosomal protein L37 /// similar to ribosomal protein L37 /// similar to ribosomal protein L37 /// ribosomal protein L37 LOC690840 /// RGD1560186 /// RGD1561310 /// Rpl37 289384 /// 498744 /// 690840 /// 81770 NM_031106 /// XM_001068169 /// XM_001075844 /// XM_002724901 /// XM_002726149 /// XM_223076 /// XM_574022 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019843 // rRNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1381400_at AI137973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137973 /DB_XREF=gi:3638750 /DB_XREF=UI-R-C0-hn-d-03-0-UI.s1 /CLONE=UI-R-C0-hn-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.27550.1 /TIER=ConsEnd /STK=2 /UG=Rn.27550 /UG_TITLE=ESTs AI137973 1381401_at BF408973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408973 /DB_XREF=gi:11396948 /DB_XREF=UI-R-BJ2-bpn-e-11-0-UI.s1 /CLONE=UI-R-BJ2-bpn-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.27766.1 /TIER=ConsEnd /STK=2 /UG=Rn.27766 /UG_TITLE=ESTs BF408973 1381402_at BE108294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108294 /DB_XREF=gi:8500399 /DB_XREF=UI-R-BS1-ayx-f-04-0-UI.s1 /CLONE=UI-R-BS1-ayx-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.33502.1 /TIER=ConsEnd /STK=2 /UG=Rn.33502 /UG_TITLE=ESTs BE108294 1381403_at AI575071 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575071 /DB_XREF=gi:4559447 /DB_XREF=UI-R-G0-ul-a-09-0-UI.s1 /CLONE=UI-R-G0-ul-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.38235.1 /TIER=ConsEnd /STK=2 /UG=Rn.38235 /UG_TITLE=ESTs, Weakly similar to MAOX RAT NADP-DEPENDENT MALIC ENZYME (R.norvegicus) AI575071 malic enzyme 2, NAD(+)-dependent, mitochondrial Me2 307270 NM_001107376 0006108 // malate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004470 // malic enzyme activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation 1381404_at AW524425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524425 /DB_XREF=gi:7166810 /DB_XREF=UI-R-BO0-ahx-c-02-0-UI.s1 /CLONE=UI-R-BO0-ahx-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.44930.1 /TIER=ConsEnd /STK=2 /UG=Rn.44930 /UG_TITLE=ESTs AW524425 Methyl-CpG binding domain protein 1 Mbd1 291439 NM_001011924 0000785 // chromatin // not recorded /// 0000785 // chromatin // inferred from electronic annotation /// 0000792 // heterochromatin // inferred from electronic annotation /// 0000792 // heterochromatin // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0005932 // microtubule basal body // inferred from electronic annotation /// 0035085 // cilium axoneme // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1381405_at BF412149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412149 /DB_XREF=gi:11400138 /DB_XREF=UI-R-BT1-bmu-d-07-0-UI.s1 /CLONE=UI-R-BT1-bmu-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.53534.1 /TIER=ConsEnd /STK=2 /UG=Rn.53534 /UG_TITLE=ESTs BF412149 1381406_at AI763954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763954 /DB_XREF=gi:5209889 /DB_XREF=UI-R-Y0-acv-b-02-0-UI.s1 /CLONE=UI-R-Y0-acv-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.62085.1 /TIER=ConsEnd /STK=2 /UG=Rn.62085 /UG_TITLE=ESTs AI763954 Similar to KIAA1913 RGD1561734 501201 XM_001054710 /// XM_576628 1381407_at AA900580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900580 /DB_XREF=gi:4233072 /DB_XREF=UI-R-E0-dn-b-06-0-UI.s1 /CLONE=UI-R-E0-dn-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.62471.1 /TIER=ConsEnd /STK=2 /UG=Rn.62471 /UG_TITLE=ESTs, Moderately similar to NADH-ubiquinone oxidoreductase B14.5B subunit (H.sapiens) AA900580 1381408_at BI275477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275477 /DB_XREF=gi:14887372 /DB_XREF=UI-R-CX0-bww-h-10-0-UI.s1 /CLONE=UI-R-CX0-bww-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.73767.1 /TIER=ConsEnd /STK=2 /UG=Rn.73767 /UG_TITLE=ESTs BI275477 1381409_at AA963978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963978 /DB_XREF=gi:4278854 /DB_XREF=UI-R-C0-gs-d-03-0-UI.s1 /CLONE=UI-R-C0-gs-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.11662.1 /TIER=ConsEnd /STK=2 /UG=Rn.11662 /UG_TITLE=ESTs AA963978 1381410_a_at AI555744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555744 /DB_XREF=gi:4488107 /DB_XREF=UI-R-C2p-qs-a-11-0-UI.s1 /CLONE=UI-R-C2p-qs-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.16775.1 /TIER=ConsEnd /STK=2 /UG=Rn.16775 /UG_TITLE=ESTs AI555744 FYVE, RhoGEF and PH domain containing 5 Fgd5 362402 NM_001108637 1381411_at AI548328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548328 /DB_XREF=gi:4465816 /DB_XREF=UI-R-C3-tg-g-10-0-UI.s1 /CLONE=UI-R-C3-tg-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.20971.1 /TIER=ConsEnd /STK=2 /UG=Rn.20971 /UG_TITLE=ESTs AI548328 1381412_at BE095850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095850 /DB_XREF=gi:8486781 /DB_XREF=UI-R-BU0-apb-c-08-0-UI.s1 /CLONE=UI-R-BU0-apb-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.21579.1 /TIER=ConsEnd /STK=2 /UG=Rn.21579 /UG_TITLE=ESTs BE095850 1381413_at AI547999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547999 /DB_XREF=gi:4465487 /DB_XREF=UI-R-C3-th-h-10-0-UI.s1 /CLONE=UI-R-C3-th-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.21720.1 /TIER=ConsEnd /STK=2 /UG=Rn.21720 /UG_TITLE=ESTs AI547999 1381414_at AA964872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964872 /DB_XREF=gi:4279746 /DB_XREF=UI-R-C0-gr-b-12-0-UI.s1 /CLONE=UI-R-C0-gr-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.23145.1 /TIER=ConsEnd /STK=2 /UG=Rn.23145 /UG_TITLE=ESTs AA964872 1381415_at AI070192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070192 /DB_XREF=gi:3396443 /DB_XREF=UI-R-C1-lp-g-12-0-UI.s1 /CLONE=UI-R-C1-lp-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.23306.1 /TIER=ConsEnd /STK=2 /UG=Rn.23306 /UG_TITLE=ESTs AI070192 1381416_at AI029400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029400 /DB_XREF=gi:4298311 /DB_XREF=UI-R-C0-iw-d-09-0-UI.s1 /CLONE=UI-R-C0-iw-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.24907.1 /TIER=ConsEnd /STK=2 /UG=Rn.24907 /UG_TITLE=ESTs AI029400 1381417_at AI111346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111346 /DB_XREF=gi:3511388 /DB_XREF=UI-R-Y0-ma-d-01-0-UI.s1 /CLONE=UI-R-Y0-ma-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.26557.1 /TIER=ConsEnd /STK=2 /UG=Rn.26557 /UG_TITLE=ESTs, Highly similar to JE0269 Prox1 protein - mouse (M.musculus) AI111346 prospero homeobox 1 Prox1 305066 NM_001107201 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001709 // cell fate determination // not recorded /// 0001822 // kidney development // not recorded /// 0001889 // liver development // not recorded /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0001945 // lymph vessel development // not recorded /// 0001946 // lymphangiogenesis // not recorded /// 0002088 // lens development in camera-type eye // not recorded /// 0002089 // lens morphogenesis in camera-type eye // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0010595 // positive regulation of endothelial cell migration // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030240 // skeletal muscle thin filament assembly // not recorded /// 0030324 // lung development // not recorded /// 0031016 // pancreas development // not recorded /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0045071 // negative regulation of viral genome replication // not recorded /// 0045446 // endothelial cell differentiation // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // not recorded /// 0045750 // positive regulation of S phase of mitotic cell cycle // not recorded /// 0045787 // positive regulation of cell cycle // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0046619 // optic placode formation involved in camera-type eye // not recorded /// 0048845 // venous blood vessel morphogenesis // not recorded /// 0055005 // ventricular cardiac myofibril development // not recorded /// 0055009 // atrial cardiac muscle tissue morphogenesis // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0060059 // embryonic retina morphogenesis in camera-type eye // not recorded /// 0060214 // endocardium formation // not recorded /// 0060298 // positive regulation of sarcomere organization // not recorded /// 0060412 // ventricular septum morphogenesis // not recorded /// 0060414 // aorta smooth muscle tissue morphogenesis // not recorded /// 0060421 // positive regulation of heart growth // not recorded /// 0060836 // lymphatic endothelial cell differentiation // not recorded /// 0060849 // regulation of transcription involved in lymphatic endothelial cell fate commitment // not recorded /// 0070309 // lens fiber cell morphogenesis // not recorded /// 0070365 // hepatocyte differentiation // not recorded /// 0070858 // negative regulation of bile acid biosynthetic process // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0016922 // ligand-dependent nuclear receptor binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0050692 // DBD domain binding // not recorded /// 0050693 // LBD domain binding // not recorded 1381418_at AI145015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145015 /DB_XREF=gi:3666814 /DB_XREF=UI-R-BT0-pr-d-08-0-UI.s1 /CLONE=UI-R-BT0-pr-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.27769.1 /TIER=ConsEnd /STK=2 /UG=Rn.27769 /UG_TITLE=ESTs AI145015 1381419_at AI145119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145119 /DB_XREF=gi:3666918 /DB_XREF=UI-R-BT0-px-e-11-0-UI.s1 /CLONE=UI-R-BT0-px-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.27812.1 /TIER=ConsEnd /STK=2 /UG=Rn.27812 /UG_TITLE=ESTs AI145119 1381420_at BF397624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397624 /DB_XREF=gi:11382608 /DB_XREF=UI-R-BS2-bfa-g-01-0-UI.s1 /CLONE=UI-R-BS2-bfa-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.28688.1 /TIER=ConsEnd /STK=2 /UG=Rn.28688 /UG_TITLE=ESTs BF397624 1381421_at AA899688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899688 /DB_XREF=gi:4232185 /DB_XREF=UI-R-E0-cy-d-06-0-UI.s1 /CLONE=UI-R-E0-cy-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.32400.1 /TIER=ConsEnd /STK=2 /UG=Rn.32400 /UG_TITLE=ESTs, Weakly similar to ZK180.3.p (Caenorhabditis elegans) (C.elegans) AA899688 RFT1 homolog (S. cerevisiae) Rft1 290552 NM_001135866 0006869 // lipid transport // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0005319 // lipid transporter activity // inferred from electronic annotation 1381422_at AA817889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817889 /DB_XREF=gi:4198413 /DB_XREF=UI-R-A0-af-c-06-0-UI.s2 /CLONE=UI-R-A0-af-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.33733.1 /TIER=ConsEnd /STK=2 /UG=Rn.33733 /UG_TITLE=ESTs AA817889 1381423_at BI278770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278770 /DB_XREF=gi:14925950 /DB_XREF=UI-R-CZ0-bzb-f-07-0-UI.s1 /CLONE=UI-R-CZ0-bzb-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.34500.1 /TIER=ConsEnd /STK=2 /UG=Rn.34500 /UG_TITLE=ESTs, Highly similar to G protein-coupled receptor kinase-interactor 2, isoform 3; ARF GTPase-activating protein GIT2; cool-associated, tyrosine phosphorylated protein 2 (Homo sapiens) (H.sapiens) BI278770 G protein-coupled receptor kinase interacting ArfGAP 2 Git2 304546 NM_001005553 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1381424_at AI535231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535231 /DB_XREF=gi:4449366 /DB_XREF=UI-R-C3-st-b-10-0-UI.s1 /CLONE=UI-R-C3-st-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.34783.1 /TIER=ConsEnd /STK=2 /UG=Rn.34783 /UG_TITLE=ESTs AI535231 1381425_at AI454686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454686 /DB_XREF=gi:4295460 /DB_XREF=UI-R-BT0-qk-e-02-0-UI.s1 /CLONE=UI-R-BT0-qk-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.35085.1 /TIER=ConsEnd /STK=2 /UG=Rn.35085 /UG_TITLE=ESTs AI454686 1381426_at AI556220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556220 /DB_XREF=gi:4488583 /DB_XREF=UI-R-C2p-rb-c-09-0-UI.s1 /CLONE=UI-R-C2p-rb-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.38404.1 /TIER=ConsEnd /STK=2 /UG=Rn.38404 /UG_TITLE=ESTs AI556220 1381427_at AI111819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111819 /DB_XREF=gi:3511768 /DB_XREF=UI-R-Y0-mf-f-11-0-UI.s1 /CLONE=UI-R-Y0-mf-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.38664.1 /TIER=ConsEnd /STK=2 /UG=Rn.38664 /UG_TITLE=ESTs, Highly similar to FXC2 RAT FORKHEAD BOX PROTEIN C2 (R.norvegicus) AI111819 forkhead box C1 Foxc1 364706 XM_002725235 /// XM_002728469 1381428_a_at AI177364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177364 /DB_XREF=gi:3728002 /DB_XREF=EST220982 /CLONE=RPLBY15 /FEA=EST /CNT=2 /TID=Rn.3878.1 /TIER=ConsEnd /STK=2 /UG=Rn.3878 /UG_TITLE=ESTs AI177364 1381429_at AI059116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059116 /DB_XREF=gi:3332893 /DB_XREF=UI-R-C1-lr-h-02-0-UI.s1 /CLONE=UI-R-C1-lr-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.39215.1 /TIER=ConsEnd /STK=2 /UG=Rn.39215 /UG_TITLE=ESTs, Moderately similar to YC02_HUMAN HYPOTHETICAL PROTEIN CGI-02 (H.sapiens) AI059116 Mitochondrial translation optimization 1 homolog (S. cerevisiae) Mto1 300852 NM_001106841 0002098 // tRNA wobble uridine modification // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1381430_at AI010149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010149 /DB_XREF=gi:3223981 /DB_XREF=EST204600 /CLONE=RLUBU37 /FEA=EST /CNT=2 /TID=Rn.40471.1 /TIER=ConsEnd /STK=2 /UG=Rn.40471 /UG_TITLE=ESTs AI010149 1381431_at AW252296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252296 /DB_XREF=gi:6595852 /DB_XREF=UI-R-BJ0-adt-b-04-0-UI.s1 /CLONE=UI-R-BJ0-adt-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.41463.1 /TIER=ConsEnd /STK=2 /UG=Rn.41463 /UG_TITLE=ESTs AW252296 1381432_at AW251291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251291 /DB_XREF=gi:6594882 /DB_XREF=UI-R-BJ0-adg-d-12-0-UI.s1 /CLONE=UI-R-BJ0-adg-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.44670.1 /TIER=ConsEnd /STK=2 /UG=Rn.44670 /UG_TITLE=ESTs AW251291 1381433_at AW251893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251893 /DB_XREF=gi:6595484 /DB_XREF=UI-R-BJ0-adn-c-03-0-UI.s1 /CLONE=UI-R-BJ0-adn-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.44691.1 /TIER=ConsEnd /STK=2 /UG=Rn.44691 /UG_TITLE=ESTs AW251893 1381434_s_at AW253721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253721 /DB_XREF=gi:6597312 /DB_XREF=UI-R-BJ0-aes-e-09-0-UI.s1 /CLONE=UI-R-BJ0-aes-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.44696.1 /TIER=ConsEnd /STK=2 /UG=Rn.44696 /UG_TITLE=ESTs, Weakly similar to nidogen 2; entactin 2 (Mus musculus) (M.musculus) AW253721 similar to nidogen 2 protein LOC302022 302022 NM_001127530 1381435_at AI705793 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI705793 /DB_XREF=gi:4993693 /DB_XREF=UI-R-AD1-zq-h-08-0-UI.s1 /CLONE=UI-R-AD1-zq-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.44720.1 /TIER=ConsEnd /STK=2 /UG=Rn.44720 /UG_TITLE=ESTs, Weakly similar to T43458 hypothetical protein DKFZp434F0621.1 (H.sapiens) AI705793 Similar to Ankyrin repeat domain-containing protein 28 LOC691770 691770 XM_001079587 /// XM_002726158 1381436_at AI602979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602979 /DB_XREF=gi:4612140 /DB_XREF=UI-R-AC1-xv-b-12-0-UI.s1 /CLONE=UI-R-AC1-xv-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.44755.1 /TIER=ConsEnd /STK=2 /UG=Rn.44755 /UG_TITLE=ESTs, Weakly similar to T33162 hypothetical protein F55F10.2 - Caenorhabditis elegans (C.elegans) AI602979 1381437_at AW253656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253656 /DB_XREF=gi:6597247 /DB_XREF=UI-R-BJ0-aer-f-11-0-UI.s1 /CLONE=UI-R-BJ0-aer-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.44757.1 /TIER=ConsEnd /STK=2 /UG=Rn.44757 /UG_TITLE=ESTs, Weakly similar to S42091 Tid(56) protein - fruit fly (D.melanogaster) AW253656 1381438_at AI059928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059928 /DB_XREF=gi:3333705 /DB_XREF=UI-R-C1-kr-e-05-0-UI.s1 /CLONE=UI-R-C1-kr-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.44883.1 /TIER=ConsEnd /STK=2 /UG=Rn.44883 /UG_TITLE=ESTs AI059928 Tensin 1 Tns1 301509 NM_001191810 /// XM_002727232 /// XM_237286 0005515 // protein binding // inferred from electronic annotation 1381439_at AW534203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534203 /DB_XREF=gi:7176617 /DB_XREF=UI-R-C4-alq-e-01-0-UI.s1 /CLONE=UI-R-C4-alq-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.45020.1 /TIER=ConsEnd /STK=2 /UG=Rn.45020 /UG_TITLE=ESTs, Weakly similar to anaerobic dimethyl sulfoxide reductase subunit B (Escherichia coli K12) (E.coli) AW534203 1381440_at AI548182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548182 /DB_XREF=gi:4465670 /DB_XREF=UI-R-C3-su-d-01-0-UI.s1 /CLONE=UI-R-C3-su-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.49030.1 /TIER=ConsEnd /STK=2 /UG=Rn.49030 /UG_TITLE=ESTs AI548182 1381441_at BE098686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098686 /DB_XREF=gi:8490552 /DB_XREF=UI-R-BJ1-atb-g-05-0-UI.s1 /CLONE=UI-R-BJ1-atb-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.49039.1 /TIER=ConsEnd /STK=2 /UG=Rn.49039 /UG_TITLE=ESTs, Highly similar to TRA1 MOUSE TNF RECEPTOR ASSOCIATED FACTOR 1 (M.musculus) BE098686 similar to Tnf receptor-associated factor 1 LOC687813 687813 XM_001080233 0007165 // signal transduction // inferred from electronic annotation /// 0042981 // regulation of apoptosis // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1381442_x_at AI579112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI579112 /DB_XREF=gi:4563488 /DB_XREF=UI-R-AG0-wv-b-12-0-UI.s1 /CLONE=UI-R-AG0-wv-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.53940.1 /TIER=ConsEnd /STK=2 /UG=Rn.53940 /UG_TITLE=ESTs AI579112 1381443_at AI716459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716459 /DB_XREF=gi:5033712 /DB_XREF=UI-R-Y0-ach-c-09-0-UI.s1 /CLONE=UI-R-Y0-ach-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.53950.1 /TIER=ConsEnd /STK=2 /UG=Rn.53950 /UG_TITLE=ESTs AI716459 hyaluronan and proteoglycan link protein 4 Hapln4 361129 NM_001108398 0007155 // cell adhesion // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // inferred from electronic annotation 1381444_at BF386605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386605 /DB_XREF=gi:11371429 /DB_XREF=UI-R-CA1-bbf-d-08-0-UI.s1 /CLONE=UI-R-CA1-bbf-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.58368.1 /TIER=ConsEnd /STK=2 /UG=Rn.58368 /UG_TITLE=ESTs BF386605 1381445_at AA996810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996810 /DB_XREF=gi:4280574 /DB_XREF=UI-R-C0-hh-h-06-0-UI.s1 /CLONE=UI-R-C0-hh-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.59109.1 /TIER=ConsEnd /STK=2 /UG=Rn.59109 /UG_TITLE=ESTs AA996810 1381446_at BF410122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410122 /DB_XREF=gi:11398097 /DB_XREF=UI-R-CA1-bjt-g-07-0-UI.s1 /CLONE=UI-R-CA1-bjt-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.61587.1 /TIER=ConsEnd /STK=2 /UG=Rn.61587 /UG_TITLE=ESTs, Weakly similar to T12532 hypothetical protein DKFZp434B204.1 (H.sapiens) BF410122 family with sequence similarity 75, member A4 Fam75a4 353306 NM_001008359 1381447_at BF418759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418759 /DB_XREF=gi:11406748 /DB_XREF=UI-R-BJ2-bql-f-08-0-UI.s1 /CLONE=UI-R-BJ2-bql-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.63448.1 /TIER=ConsEnd /STK=2 /UG=Rn.63448 /UG_TITLE=ESTs BF418759 similar to RIKEN cDNA 9430015G10 RGD1311517 313775 NM_001014072 1381448_at AW535305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535305 /DB_XREF=gi:7177719 /DB_XREF=UI-R-C4-alv-f-01-0-UI.s1 /CLONE=UI-R-C4-alv-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.64451.1 /TIER=ConsEnd /STK=2 /UG=Rn.64451 /UG_TITLE=ESTs AW535305 asparaginyl-tRNA synthetase 2 (mitochondrial)(putative) Nars2 293128 NM_001034921 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006421 // asparaginyl-tRNA aminoacylation // inferred from electronic annotation /// 0006422 // aspartyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004815 // aspartate-tRNA ligase activity // inferred from electronic annotation /// 0004816 // asparagine-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1381449_s_at BG670310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670310 /DB_XREF=gi:13892409 /DB_XREF=DRNADA12 /CLONE=DRNADA12 /FEA=EST /CNT=2 /TID=Rn.74120.1 /TIER=ConsEnd /STK=2 /UG=Rn.74120 /UG_TITLE=ESTs BG670310 transforming growth factor alpha Tgfa 24827 NM_012671 0000187 // activation of MAPK activity // not recorded /// 0000187 // activation of MAPK activity // inferred from sequence or structural similarity /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0006916 // anti-apoptosis // inferred from direct assay /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0042060 // wound healing // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043524 // negative regulation of neuron apoptosis // inferred from mutant phenotype /// 0043526 // neuroprotection // inferred from mutant phenotype /// 0045741 // positive regulation of epidermal growth factor receptor activity // not recorded /// 0045741 // positive regulation of epidermal growth factor receptor activity // inferred from sequence or structural similarity /// 0045840 // positive regulation of mitosis // not recorded /// 0045840 // positive regulation of mitosis // inferred from sequence or structural similarity /// 0048523 // negative regulation of cellular process // inferred from direct assay /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from sequence or structural similarity /// 0051480 // cytosolic calcium ion homeostasis // inferred from mutant phenotype /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001948 // glycoprotein binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // not recorded /// 0004708 // MAP kinase kinase activity // not recorded /// 0004708 // MAP kinase kinase activity // inferred from sequence or structural similarity /// 0005154 // epidermal growth factor receptor binding // inferred from direct assay /// 0005154 // epidermal growth factor receptor binding // not recorded /// 0005154 // epidermal growth factor receptor binding // inferred from sequence or structural similarity /// 0005154 // epidermal growth factor receptor binding // traceable author statement /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // not recorded /// 0008083 // growth factor activity // inferred from sequence or structural similarity /// 0008083 // growth factor activity // traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation 1381450_at BI288987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288987 /DB_XREF=gi:14946098 /DB_XREF=UI-R-DK0-cdh-b-07-0-UI.s1 /CLONE=UI-R-DK0-cdh-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.78977.1 /TIER=ConsEnd /STK=2 /UG=Rn.78977 /UG_TITLE=ESTs BI288987 1381451_at AI548892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548892 /DB_XREF=gi:4466380 /DB_XREF=UI-R-C3-tp-a-11-0-UI.s1 /CLONE=UI-R-C3-tp-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.81324.1 /TIER=ConsEnd /STK=2 /UG=Rn.81324 /UG_TITLE=ESTs AI548892 matrix metallopeptidase 23 Mmp23 94339 NM_053606 0000003 // reproduction // not recorded /// 0000003 // reproduction // inferred from sequence or structural similarity /// 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // inferred from sequence or structural similarity 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // not recorded /// 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1381452_at AI071246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071246 /DB_XREF=gi:3397461 /DB_XREF=UI-R-C2-nb-d-06-0-UI.s1 /CLONE=UI-R-C2-nb-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.19997.1 /TIER=ConsEnd /STK=2 /UG=Rn.19997 /UG_TITLE=ESTs AI071246 bone morphogenetic protein 8a Bmp8a 680931 NM_001109432 0007281 // germ cell development // not recorded /// 0007283 // spermatogenesis // not recorded /// 0040007 // growth // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0008083 // growth factor activity // inferred from electronic annotation 1381453_at BE110814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110814 /DB_XREF=gi:8502919 /DB_XREF=UI-R-BJ1-aus-c-07-0-UI.s1 /CLONE=UI-R-BJ1-aus-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.27028.1 /TIER=ConsEnd /STK=2 /UG=Rn.27028 /UG_TITLE=ESTs BE110814 1381454_at AI144856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144856 /DB_XREF=gi:3666655 /DB_XREF=UI-R-BT0-pm-f-09-0-UI.s1 /CLONE=UI-R-BT0-pm-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.27706.1 /TIER=ConsEnd /STK=2 /UG=Rn.27706 /UG_TITLE=ESTs AI144856 1381455_at AI639359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639359 /DB_XREF=gi:4700393 /DB_XREF=rx02515s /CLONE=rx02515 /FEA=EST /CNT=2 /TID=Rn.43514.1 /TIER=ConsEnd /STK=2 /UG=Rn.43514 /UG_TITLE=ESTs AI639359 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4 Als2cr4 316412 NM_001108220 0005515 // protein binding // not recorded 1381456_at BE096289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096289 /DB_XREF=gi:8487220 /DB_XREF=UI-R-BU0-ape-c-09-0-UI.s1 /CLONE=UI-R-BU0-ape-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.49422.1 /TIER=ConsEnd /STK=2 /UG=Rn.49422 /UG_TITLE=ESTs BE096289 1381457_at BI294465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294465 /DB_XREF=gi:14956942 /DB_XREF=UI-R-DK0-ceo-d-04-0-UI.s1 /CLONE=UI-R-DK0-ceo-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.58023.1 /TIER=ConsEnd /STK=2 /UG=Rn.58023 /UG_TITLE=ESTs BI294465 1381458_at AA893897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893897 /DB_XREF=gi:3020776 /DB_XREF=EST197700 /CLONE=RPLAN23 /FEA=EST /CNT=2 /TID=Rn.79384.1 /TIER=ConsEnd /STK=2 /UG=Rn.79384 /UG_TITLE=ESTs AA893897 1381459_at BE099644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099644 /DB_XREF=gi:8491523 /DB_XREF=UI-R-BJ1-atp-f-09-0-UI.s1 /CLONE=UI-R-BJ1-atp-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.48933.1 /TIER=ConsEnd /STK=2 /UG=Rn.48933 /UG_TITLE=ESTs BE099644 1381460_at BG377898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377898 /DB_XREF=gi:13302370 /DB_XREF=UI-R-CU0-bvg-e-05-0-UI.s1 /CLONE=UI-R-CU0-bvg-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.49436.1 /TIER=ConsEnd /STK=2 /UG=Rn.49436 /UG_TITLE=ESTs BG377898 0005515 // protein binding // inferred from electronic annotation 1381461_at AI058509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058509 /DB_XREF=gi:3332286 /DB_XREF=UI-R-C1-kv-e-03-0-UI.s1 /CLONE=UI-R-C1-kv-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.18896.1 /TIER=ConsEnd /STK=2 /UG=Rn.18896 /UG_TITLE=ESTs AI058509 1381462_at BI294541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294541 /DB_XREF=gi:14957092 /DB_XREF=UI-R-DK0-cel-d-09-0-UI.s1 /CLONE=UI-R-DK0-cel-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.28681.1 /TIER=ConsEnd /STK=2 /UG=Rn.28681 /UG_TITLE=ESTs BI294541 similar to mKIAA1940 protein RGD1566130 312504 NM_001107871 1381463_at BI299627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299627 /DB_XREF=gi:14975907 /DB_XREF=UI-R-CV2-chj-d-09-0-UI.s1 /CLONE=UI-R-CV2-chj-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.66937.1 /TIER=ConsEnd /STK=2 /UG=Rn.66937 /UG_TITLE=ESTs BI299627 1381464_at AA957545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957545 /DB_XREF=gi:4277435 /DB_XREF=UI-R-E1-gf-e-09-0-UI.s1 /CLONE=UI-R-E1-gf-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.19492.2 /TIER=ConsEnd /STK=2 /UG=Rn.19492 /UG_TITLE=ESTs, Weakly similar to TBX2 PROTEIN (M.musculus) AA957545 T-box 3 Tbx3 353305 NM_181638 0001501 // skeletal system development // not recorded /// 0001501 // skeletal system development // inferred from sequence or structural similarity /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001947 // heart looping // inferred from electronic annotation /// 0001947 // heart looping // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from sequence or structural similarity /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007569 // cell aging // not recorded /// 0007569 // cell aging // inferred from sequence or structural similarity /// 0007569 // cell aging // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008595 // anterior/posterior axis specification, embryo // not recorded /// 0008595 // anterior/posterior axis specification, embryo // inferred from sequence or structural similarity /// 0008595 // anterior/posterior axis specification, embryo // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010159 // specification of organ position // inferred from electronic annotation /// 0010159 // specification of organ position // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0021761 // limbic system development // inferred from electronic annotation /// 0021761 // limbic system development // not recorded /// 0030539 // male genitalia development // not recorded /// 0030539 // male genitalia development // inferred from sequence or structural similarity /// 0030539 // male genitalia development // inferred from electronic annotation /// 0030540 // female genitalia development // not recorded /// 0030540 // female genitalia development // inferred from sequence or structural similarity /// 0030540 // female genitalia development // inferred from electronic annotation /// 0030879 // mammary gland development // not recorded /// 0030879 // mammary gland development // inferred from sequence or structural similarity /// 0030879 // mammary gland development // inferred from electronic annotation /// 0032275 // luteinizing hormone secretion // not recorded /// 0032275 // luteinizing hormone secretion // inferred from sequence or structural similarity /// 0032275 // luteinizing hormone secretion // inferred from electronic annotation /// 0035108 // limb morphogenesis // not recorded /// 0035108 // limb morphogenesis // inferred from electronic annotation /// 0035117 // embryonic arm morphogenesis // not recorded /// 0035117 // embryonic arm morphogenesis // inferred from sequence or structural similarity /// 0035117 // embryonic arm morphogenesis // inferred from electronic annotation /// 0035136 // forelimb morphogenesis // inferred from electronic annotation /// 0035136 // forelimb morphogenesis // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // not recorded /// 0042733 // embryonic digit morphogenesis // inferred from sequence or structural similarity /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045662 // negative regulation of myoblast differentiation // not recorded /// 0045662 // negative regulation of myoblast differentiation // inferred from sequence or structural similarity /// 0045662 // negative regulation of myoblast differentiation // inferred from electronic annotation /// 0045787 // positive regulation of cell cycle // not recorded /// 0045787 // positive regulation of cell cycle // inferred from sequence or structural similarity /// 0045787 // positive regulation of cell cycle // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0046884 // follicle-stimulating hormone secretion // not recorded /// 0046884 // follicle-stimulating hormone secretion // inferred from sequence or structural similarity /// 0046884 // follicle-stimulating hormone secretion // inferred from electronic annotation /// 0048332 // mesoderm morphogenesis // not recorded /// 0048332 // mesoderm morphogenesis // inferred from sequence or structural similarity /// 0048332 // mesoderm morphogenesis // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // not recorded /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060444 // branching involved in mammary gland duct morphogenesis // not recorded /// 0060596 // mammary placode formation // inferred from electronic annotation /// 0060596 // mammary placode formation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016565 // general transcriptional repressor activity // not recorded /// 0016565 // general transcriptional repressor activity // inferred from sequence or structural similarity /// 0016565 // general transcriptional repressor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1381465_at BE099710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099710 /DB_XREF=gi:8491590 /DB_XREF=UI-R-BJ1-atk-d-08-0-UI.s1 /CLONE=UI-R-BJ1-atk-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.49894.1 /TIER=ConsEnd /STK=2 /UG=Rn.49894 /UG_TITLE=ESTs BE099710 transmembrane protein 229A Tmem229a 685756 NM_001109480 1381466_at BE099320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099320 /DB_XREF=gi:8491196 /DB_XREF=UI-R-BJ1-ato-b-03-0-UI.s1 /CLONE=UI-R-BJ1-ato-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.56199.1 /TIER=ConsEnd /STK=2 /UG=Rn.56199 /UG_TITLE=ESTs BE099320 leucine-rich PPR-motif containing Lrpprc 313867 NM_001008519 0006350 // transcription // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0000794 // condensed nuclear chromosome // not recorded /// 0000794 // condensed nuclear chromosome // inferred from sequence or structural similarity /// 0000794 // condensed nuclear chromosome // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005640 // nuclear outer membrane // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005856 // cytoskeleton // not recorded /// 0005856 // cytoskeleton // inferred from sequence or structural similarity /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0048487 // beta-tubulin binding // not recorded /// 0048487 // beta-tubulin binding // inferred from sequence or structural similarity /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded /// 0051015 // actin filament binding // inferred from sequence or structural similarity 1381467_at AI598594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598594 /DB_XREF=gi:4607628 /DB_XREF=EST250283 /CLONE=REMDT09 /FEA=EST /CNT=2 /TID=Rn.32007.2 /TIER=ConsEnd /STK=2 /UG=Rn.32007 /UG_TITLE=ESTs AI598594 neogenin homolog 1 (chicken) Neo1 81735 NM_001191881 /// XM_001074913 /// XM_343402 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007520 // myoblast fusion // not recorded /// 0045449 // regulation of transcription // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // not recorded /// 0045296 // cadherin binding // not recorded 1381468_at BM383384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383384 /DB_XREF=gi:18183437 /DB_XREF=UI-R-DM1-cka-m-03-0-UI.s1 /CLONE=UI-R-DM1-cka-m-03-0-UI /FEA=EST /CNT=2 /TID=Rn.53342.1 /TIER=ConsEnd /STK=2 /UG=Rn.53342 /UG_TITLE=ESTs BM383384 leucine rich repeat containing 36 Lrrc36 361394 NM_001004088 0006950 // response to stress // inferred from electronic annotation 1381469_a_at AW526967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526967 /DB_XREF=gi:7169381 /DB_XREF=UI-R-BO1-ajg-a-09-0-UI.s1 /CLONE=UI-R-BO1-ajg-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.62738.2 /TIER=ConsEnd /STK=1 /UG=Rn.62738 /UG_TITLE=ESTs AW526967 GRB10 interacting GYF protein 1 Gigyf1 304378 NM_001107133 0048009 // insulin-like growth factor receptor signaling pathway // not recorded 0005515 // protein binding // not recorded 1381470_at AI454052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454052 /DB_XREF=gi:4291026 /DB_XREF=UI-R-BT0-qa-e-12-0-UI.s1 /CLONE=UI-R-BT0-qa-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.16698.1 /TIER=ConsEnd /STK=2 /UG=Rn.16698 /UG_TITLE=ESTs AI454052 1381471_at AI060117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060117 /DB_XREF=gi:3333894 /DB_XREF=UI-R-C1-ll-a-01-0-UI.s1 /CLONE=UI-R-C1-ll-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.21181.1 /TIER=ConsEnd /STK=2 /UG=Rn.21181 /UG_TITLE=ESTs AI060117 1381472_at BE110276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110276 /DB_XREF=gi:8502381 /DB_XREF=UI-R-CA0-axl-b-02-0-UI.s1 /CLONE=UI-R-CA0-axl-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.27889.1 /TIER=ConsEnd /STK=2 /UG=Rn.27889 /UG_TITLE=ESTs BE110276 1381473_at BG381125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381125 /DB_XREF=gi:13305597 /DB_XREF=UI-R-CS0-btr-e-06-0-UI.s1 /CLONE=UI-R-CS0-btr-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.66798.1 /TIER=ConsEnd /STK=2 /UG=Rn.66798 /UG_TITLE=ESTs BG381125 microRNA mir-351 Mir351 100314289 NR_031796 1381474_at AI010322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010322 /DB_XREF=gi:3224154 /DB_XREF=EST204773 /CLONE=RLUBX15 /FEA=EST /CNT=2 /TID=Rn.17557.1 /TIER=ConsEnd /STK=2 /UG=Rn.17557 /UG_TITLE=ESTs AI010322 muscleblind-like 3 (Drosophila) Mbnl3 302492 NM_001106949 0045662 // negative regulation of myoblast differentiation // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1381475_at BE108787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108787 /DB_XREF=gi:8500892 /DB_XREF=UI-R-BS1-ayy-d-10-0-UI.s1 /CLONE=UI-R-BS1-ayy-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.49029.1 /TIER=ConsEnd /STK=2 /UG=Rn.49029 /UG_TITLE=ESTs, Highly similar to T46428 hypothetical protein DKFZp434B2226.1 (H.sapiens) BE108787 sidekick homolog 2 (chicken) Sdk2 360652 NM_001108303 1381476_at BF416405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416405 /DB_XREF=gi:11404394 /DB_XREF=UI-R-CA0-bks-c-01-0-UI.s1 /CLONE=UI-R-CA0-bks-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.63014.1 /TIER=ConsEnd /STK=2 /UG=Rn.63014 /UG_TITLE=ESTs BF416405 1381477_at AI102148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102148 /DB_XREF=gi:3706962 /DB_XREF=EST211437 /CLONE=RBRBZ73 /FEA=EST /CNT=2 /TID=Rn.28138.1 /TIER=ConsEnd /STK=2 /UG=Rn.28138 /UG_TITLE=ESTs AI102148 ankyrin 1, erythrocytic Ank1 306570 NM_001107322 0006779 // porphyrin biosynthetic process // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0015672 // monovalent inorganic cation transport // not recorded /// 0048821 // erythrocyte development // not recorded 0005634 // nucleus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0014731 // spectrin-associated cytoskeleton // not recorded /// 0016020 // membrane // not recorded /// 0016529 // sarcoplasmic reticulum // inferred from direct assay /// 0019717 // synaptosome // inferred from direct assay /// 0030018 // Z disc // inferred from direct assay /// 0030673 // axolemma // inferred from direct assay /// 0030863 // cortical cytoskeleton // not recorded /// 0031430 // M band // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008093 // cytoskeletal adaptor activity // not recorded /// 0030507 // spectrin binding // not recorded 1381478_at BF403155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403155 /DB_XREF=gi:11391130 /DB_XREF=UI-R-CA0-bhs-c-10-0-UI.s1 /CLONE=UI-R-CA0-bhs-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.60210.1 /TIER=ConsEnd /STK=2 /UG=Rn.60210 /UG_TITLE=ESTs BF403155 1381479_at BF419055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419055 /DB_XREF=gi:11407044 /DB_XREF=UI-R-BJ2-bqn-a-09-0-UI.s1 /CLONE=UI-R-BJ2-bqn-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.63471.1 /TIER=ConsEnd /STK=2 /UG=Rn.63471 /UG_TITLE=ESTs BF419055 1381480_at BE096539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096539 /DB_XREF=gi:8487470 /DB_XREF=UI-R-BU0-aph-c-11-0-UI.s1 /CLONE=UI-R-BU0-aph-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.66777.1 /TIER=ConsEnd /STK=2 /UG=Rn.66777 /UG_TITLE=ESTs BE096539 sterile alpha and TIR motif containing 1 Sarm1 287545 NM_001105817 0007165 // signal transduction // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation 0031224 // intrinsic to membrane // inferred from electronic annotation 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1381481_at AI028912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI028912 /DB_XREF=gi:4294922 /DB_XREF=UI-R-C0-il-e-03-0-UI.s1 /CLONE=UI-R-C0-il-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.18099.1 /TIER=ConsEnd /STK=2 /UG=Rn.18099 /UG_TITLE=ESTs AI028912 1381482_at AI555166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555166 /DB_XREF=gi:4487529 /DB_XREF=UI-R-C2p-qt-e-11-0-UI.s1 /CLONE=UI-R-C2p-qt-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.26854.1 /TIER=ConsEnd /STK=2 /UG=Rn.26854 /UG_TITLE=ESTs AI555166 1381483_at BE118096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118096 /DB_XREF=gi:8510201 /DB_XREF=UI-R-BS1-azn-f-04-0-UI.s1 /CLONE=UI-R-BS1-azn-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.49725.1 /TIER=ConsEnd /STK=2 /UG=Rn.49725 /UG_TITLE=ESTs BE118096 1381484_at BI295208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295208 /DB_XREF=gi:14958423 /DB_XREF=UI-R-DK0-cet-a-12-0-UI.s1 /CLONE=UI-R-DK0-cet-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.49896.1 /TIER=ConsEnd /STK=2 /UG=Rn.49896 /UG_TITLE=ESTs BI295208 1381485_at BF411849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411849 /DB_XREF=gi:11399838 /DB_XREF=UI-R-BT1-bmr-a-05-0-UI.s1 /CLONE=UI-R-BT1-bmr-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.52371.1 /TIER=ConsEnd /STK=2 /UG=Rn.52371 /UG_TITLE=ESTs BF411849 similar to testicular serine protease 2 LOC683156 683156 XM_001064709 0006508 // proteolysis // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation 1381486_at BF386108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386108 /DB_XREF=gi:11370932 /DB_XREF=UI-R-CA1-bba-b-01-0-UI.s1 /CLONE=UI-R-CA1-bba-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.56187.1 /TIER=ConsEnd /STK=2 /UG=Rn.56187 /UG_TITLE=ESTs BF386108 1381487_at BF402869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402869 /DB_XREF=gi:11390844 /DB_XREF=UI-R-CA0-bhi-d-08-0-UI.s1 /CLONE=UI-R-CA0-bhi-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.60145.1 /TIER=ConsEnd /STK=2 /UG=Rn.60145 /UG_TITLE=ESTs, Highly similar to AGP1_RAT ANGIOPOIETIN-1 (ANG-1) (R.norvegicus) BF402869 angiopoietin 1 Angpt1 89807 NM_053546 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001541 // ovarian follicle development // inferred from mutant phenotype /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001936 // regulation of endothelial cell proliferation // not recorded /// 0002040 // sprouting angiogenesis // not recorded /// 0002040 // sprouting angiogenesis // inferred from electronic annotation /// 0002092 // positive regulation of receptor internalization // not recorded /// 0002092 // positive regulation of receptor internalization // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007171 // activation of transmembrane receptor protein tyrosine kinase activity // not recorded /// 0007171 // activation of transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0010595 // positive regulation of endothelial cell migration // not recorded /// 0010595 // positive regulation of endothelial cell migration // inferred from electronic annotation /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014842 // regulation of satellite cell proliferation // not recorded /// 0014842 // regulation of satellite cell proliferation // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030210 // heparin biosynthetic process // not recorded /// 0030210 // heparin biosynthetic process // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from expression pattern /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0031398 // positive regulation of protein ubiquitination // inferred from electronic annotation /// 0031589 // cell-substrate adhesion // not recorded /// 0031589 // cell-substrate adhesion // inferred from electronic annotation /// 0033138 // positive regulation of peptidyl-serine phosphorylation // not recorded /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033552 // response to vitamin B3 // inferred from expression pattern /// 0034394 // protein localization at cell surface // not recorded /// 0034394 // protein localization at cell surface // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043116 // negative regulation of vascular permeability // not recorded /// 0043116 // negative regulation of vascular permeability // inferred from electronic annotation /// 0043536 // positive regulation of blood vessel endothelial cell migration // not recorded /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0045785 // positive regulation of cell adhesion // not recorded /// 0045785 // positive regulation of cell adhesion // inferred from electronic annotation /// 0048014 // Tie receptor signaling pathway // not recorded /// 0048014 // Tie receptor signaling pathway // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050918 // positive chemotaxis // not recorded /// 0050918 // positive chemotaxis // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded /// 0051897 // positive regulation of protein kinase B signaling cascade // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0072012 // glomerulus vasculature development // not recorded /// 0072012 // glomerulus vasculature development // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005902 // microvillus // not recorded /// 0005902 // microvillus // inferred from electronic annotation /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0030971 // receptor tyrosine kinase binding // not recorded /// 0030971 // receptor tyrosine kinase binding // inferred from electronic annotation 1381488_at BF419534 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419534 /DB_XREF=gi:11407523 /DB_XREF=UI-R-CA0-bpd-a-11-0-UI.s1 /CLONE=UI-R-CA0-bpd-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.63554.1 /TIER=ConsEnd /STK=2 /UG=Rn.63554 /UG_TITLE=ESTs BF419534 1381489_at BE114007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114007 /DB_XREF=gi:8506112 /DB_XREF=UI-R-CA0-axn-a-02-0-UI.s1 /CLONE=UI-R-CA0-axn-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.21858.1 /TIER=ConsEnd /STK=2 /UG=Rn.21858 /UG_TITLE=ESTs BE114007 1381490_at AI711004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711004 /DB_XREF=gi:5000780 /DB_XREF=UI-R-AE1-zj-h-10-0-UI.s1 /CLONE=UI-R-AE1-zj-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.41456.1 /TIER=ConsEnd /STK=2 /UG=Rn.41456 /UG_TITLE=ESTs, Moderately similar to PHOSPHORYLASE B KINASE GAMMA CATALYTIC CHAIN, SKELETAL MUSCLE ISOFORM (R.norvegicus) AI711004 1381491_at BE097634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097634 /DB_XREF=gi:8488565 /DB_XREF=UI-R-BO1-apz-h-11-0-UI.s1 /CLONE=UI-R-BO1-apz-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.49059.1 /TIER=ConsEnd /STK=2 /UG=Rn.49059 /UG_TITLE=ESTs BE097634 1381492_at AI137687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137687 /DB_XREF=gi:3638464 /DB_XREF=UI-R-C0-ht-c-11-0-UI.s1 /CLONE=UI-R-C0-ht-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.53940.2 /TIER=ConsEnd /STK=2 /UG=Rn.53940 /UG_TITLE=ESTs AI137687 1381493_x_at AI137687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137687 /DB_XREF=gi:3638464 /DB_XREF=UI-R-C0-ht-c-11-0-UI.s1 /CLONE=UI-R-C0-ht-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.53940.2 /TIER=ConsEnd /STK=2 /UG=Rn.53940 /UG_TITLE=ESTs AI137687 1381494_at AA964419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964419 /DB_XREF=gi:4279293 /DB_XREF=UI-R-E1-gp-g-05-0-UI.s1 /CLONE=UI-R-E1-gp-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.32987.1 /TIER=ConsEnd /STK=2 /UG=Rn.32987 /UG_TITLE=ESTs AA964419 Capping protein (actin filament) muscle Z-line, beta Capzb 298584 NM_001005903 0030030 // cell projection organization // not recorded /// 0030032 // lamellipodium assembly // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0051693 // actin filament capping // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0008290 // F-actin capping protein complex // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0030027 // lamellipodium // not recorded /// 0030863 // cortical cytoskeleton // not recorded /// 0071203 // WASH complex // not recorded /// 0071203 // WASH complex // inferred from sequence or structural similarity 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1381495_at BF393718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393718 /DB_XREF=gi:11378581 /DB_XREF=UI-R-CA0-bgb-b-06-0-UI.s1 /CLONE=UI-R-CA0-bgb-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.46427.1 /TIER=ConsEnd /STK=2 /UG=Rn.46427 /UG_TITLE=ESTs BF393718 1381496_x_at BF420742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420742 /DB_XREF=gi:11408731 /DB_XREF=UI-R-BJ2-bpz-f-05-0-UI.s1 /CLONE=UI-R-BJ2-bpz-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.63743.1 /TIER=ConsEnd /STK=2 /UG=Rn.63743 /UG_TITLE=ESTs BF420742 1381497_at BF405306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405306 /DB_XREF=gi:11393281 /DB_XREF=UI-R-CA1-biw-k-01-0-UI.s1 /CLONE=UI-R-CA1-biw-k-01-0-UI /FEA=EST /CNT=2 /TID=Rn.65356.1 /TIER=ConsEnd /STK=2 /UG=Rn.65356 /UG_TITLE=ESTs BF405306 1381498_at AA956116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956116 /DB_XREF=gi:4238510 /DB_XREF=UI-R-E1-fi-f-04-0-UI.s1 /CLONE=UI-R-E1-fi-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.19487.1 /TIER=ConsEnd /STK=2 /UG=Rn.19487 /UG_TITLE=ESTs AA956116 1381499_at BM390226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390226 /DB_XREF=gi:18190279 /DB_XREF=UI-R-CN1-cjq-g-17-0-UI.s1 /CLONE=UI-R-CN1-cjq-g-17-0-UI /FEA=EST /CNT=2 /TID=Rn.78361.1 /TIER=ConsEnd /STK=2 /UG=Rn.78361 /UG_TITLE=ESTs BM390226 1381500_at BF386748 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386748 /DB_XREF=gi:11371572 /DB_XREF=UI-R-CA1-bbh-a-03-0-UI.s1 /CLONE=UI-R-CA1-bbh-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.56334.1 /TIER=ConsEnd /STK=2 /UG=Rn.56334 /UG_TITLE=ESTs BF386748 1381501_at BG380668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380668 /DB_XREF=gi:13305140 /DB_XREF=UI-R-CT0-bua-a-06-0-UI.s1 /CLONE=UI-R-CT0-bua-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.66760.1 /TIER=ConsEnd /STK=2 /UG=Rn.66760 /UG_TITLE=ESTs BG380668 1381502_at AI709415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709415 /DB_XREF=gi:4999191 /DB_XREF=UI-R-C3-ss-a-06-0-UI.s1 /CLONE=UI-R-C3-ss-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.19338.1 /TIER=ConsEnd /STK=2 /UG=Rn.19338 /UG_TITLE=ESTs AI709415 meiosis-specific nuclear structural 1 Mns1 363093 NM_001007752 0007126 // meiosis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005882 // intermediate filament // inferred from electronic annotation /// 0005882 // intermediate filament // not recorded 1381503_at AI073168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073168 /DB_XREF=gi:3399362 /DB_XREF=UI-R-Y0-mi-e-07-0-UI.s1 /CLONE=UI-R-Y0-mi-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.21853.1 /TIER=ConsEnd /STK=2 /UG=Rn.21853 /UG_TITLE=ESTs AI073168 1381504_at AI639412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639412 /DB_XREF=gi:4700446 /DB_XREF=rx04434s /CLONE=rx04434 /FEA=EST /CNT=2 /TID=Rn.43324.1 /TIER=ConsEnd /STK=2 /UG=Rn.43324 /UG_TITLE=ESTs, Weakly similar to PGS1 RAT BONECARTILAGE PROTEOGLYCAN I PRECURSOR (R.norvegicus) AI639412 asporin Aspn 306805 NM_001014008 0030282 // bone mineralization // inferred from electronic annotation /// 0030282 // bone mineralization // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0070171 // negative regulation of tooth mineralization // inferred from electronic annotation /// 0070171 // negative regulation of tooth mineralization // not recorded 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0031012 // extracellular matrix // not recorded /// 0046930 // pore complex // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015288 // porin activity // inferred from electronic annotation 1381505_at BE106836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106836 /DB_XREF=gi:8498938 /DB_XREF=UI-R-BT1-ast-g-04-0-UI.s1 /CLONE=UI-R-BT1-ast-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.49040.1 /TIER=ConsEnd /STK=2 /UG=Rn.49040 /UG_TITLE=ESTs BE106836 1381506_at BF417935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417935 /DB_XREF=gi:11405924 /DB_XREF=UI-R-CA0-bly-c-03-0-UI.s1 /CLONE=UI-R-CA0-bly-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.63293.1 /TIER=ConsEnd /STK=2 /UG=Rn.63293 /UG_TITLE=ESTs BF417935 1381507_at BE097981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097981 /DB_XREF=gi:8488875 /DB_XREF=UI-R-C4-amc-a-02-0-UI.s1 /CLONE=UI-R-C4-amc-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.45939.1 /TIER=ConsEnd /STK=2 /UG=Rn.45939 /UG_TITLE=ESTs BE097981 1381508_at BE098143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098143 /DB_XREF=gi:8490047 /DB_XREF=UI-R-BJ1-ata-g-10-0-UI.s1 /CLONE=UI-R-BJ1-ata-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.49769.1 /TIER=ConsEnd /STK=2 /UG=Rn.49769 /UG_TITLE=ESTs BE098143 1381509_at BF393724 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393724 /DB_XREF=gi:11378587 /DB_XREF=UI-R-CA0-bgb-c-01-0-UI.s1 /CLONE=UI-R-CA0-bgb-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.58119.1 /TIER=ConsEnd /STK=2 /UG=Rn.58119 /UG_TITLE=ESTs, Moderately similar to M172 MOUSE MEMBRANE COMPONENT, CHROMOSOME 17, SURFACE MARKER 2 (M.musculus) BF393724 neighbor of Brca1 gene 1 Nbr1 303554 NM_001024765 0016236 // macroautophagy // not recorded /// 0016236 // macroautophagy // inferred from sequence or structural similarity /// 0051259 // protein oligomerization // not recorded /// 0051259 // protein oligomerization // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005770 // late endosome // inferred from sequence or structural similarity /// 0005776 // autophagic vacuole // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031430 // M band // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043130 // ubiquitin binding // not recorded /// 0043130 // ubiquitin binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1381510_at AI602048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602048 /DB_XREF=gi:4611209 /DB_XREF=UI-R-G0-us-e-06-0-UI.s2 /CLONE=UI-R-G0-us-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.6759.1 /TIER=ConsEnd /STK=2 /UG=Rn.6759 /UG_TITLE=ESTs AI602048 1381511_at AW527625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527625 /DB_XREF=gi:7170039 /DB_XREF=UI-R-BT1-ajz-d-06-0-UI.s1 /CLONE=UI-R-BT1-ajz-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.46268.1 /TIER=ConsEnd /STK=2 /UG=Rn.46268 /UG_TITLE=ESTs AW527625 1381512_at BF386977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386977 /DB_XREF=gi:11371801 /DB_XREF=UI-R-CA1-bbj-g-12-0-UI.s1 /CLONE=UI-R-CA1-bbj-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.59733.1 /TIER=ConsEnd /STK=2 /UG=Rn.59733 /UG_TITLE=ESTs BF386977 1381513_at AI058295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058295 /DB_XREF=gi:3332072 /DB_XREF=UI-R-C1-kl-c-11-0-UI.s1 /CLONE=UI-R-C1-kl-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.18831.1 /TIER=ConsEnd /STK=2 /UG=Rn.18831 /UG_TITLE=ESTs AI058295 1381514_at AI111456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111456 /DB_XREF=gi:3511498 /DB_XREF=UI-R-Y0-lz-d-06-0-UI.s1 /CLONE=UI-R-Y0-lz-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.26583.1 /TIER=ConsEnd /STK=2 /UG=Rn.26583 /UG_TITLE=ESTs AI111456 1381515_at AW532132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532132 /DB_XREF=gi:7174546 /DB_XREF=UI-R-C4-ali-f-09-0-UI.s1 /CLONE=UI-R-C4-ali-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.47887.1 /TIER=ConsEnd /STK=2 /UG=Rn.47887 /UG_TITLE=ESTs AW532132 1381516_at BF387533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387533 /DB_XREF=gi:11372357 /DB_XREF=UI-R-CA1-bbn-e-02-0-UI.s1 /CLONE=UI-R-CA1-bbn-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.58478.1 /TIER=ConsEnd /STK=2 /UG=Rn.58478 /UG_TITLE=ESTs BF387533 1381517_at BF413506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413506 /DB_XREF=gi:11401495 /DB_XREF=UI-R-CA0-bof-a-06-0-UI.s1 /CLONE=UI-R-CA0-bof-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.62367.1 /TIER=ConsEnd /STK=2 /UG=Rn.62367 /UG_TITLE=ESTs BF413506 1381518_at BF409158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409158 /DB_XREF=gi:11397133 /DB_XREF=UI-R-BT1-bkm-f-09-0-UI.s1 /CLONE=UI-R-BT1-bkm-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.15265.1 /TIER=ConsEnd /STK=2 /UG=Rn.15265 /UG_TITLE=ESTs BF409158 1381519_at BF407752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407752 /DB_XREF=gi:11395727 /DB_XREF=UI-R-BJ2-brd-b-07-0-UI.s1 /CLONE=UI-R-BJ2-brd-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.61077.1 /TIER=ConsEnd /STK=2 /UG=Rn.61077 /UG_TITLE=ESTs BF407752 AT rich interactive domain 1A (SWI-like) Arid1a 297867 NM_001106635 0006325 // chromatin organization // not recorded /// 0030520 // estrogen receptor signaling pathway // not recorded /// 0030521 // androgen receptor signaling pathway // not recorded /// 0042921 // glucocorticoid receptor signaling pathway // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0016514 // SWI/SNF complex // not recorded /// 0071564 // npBAF complex // not recorded /// 0071565 // nBAF complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded 1381520_at BE105072 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105072 /DB_XREF=gi:8497173 /DB_XREF=UI-R-BX0-asg-b-02-0-UI.s1 /CLONE=UI-R-BX0-asg-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.20905.1 /TIER=ConsEnd /STK=2 /UG=Rn.20905 /UG_TITLE=ESTs BE105072 1381521_at AI454580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454580 /DB_XREF=gi:4294721 /DB_XREF=UI-R-BT0-pw-g-11-0-UI.s1 /CLONE=UI-R-BT0-pw-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.35062.1 /TIER=ConsEnd /STK=2 /UG=Rn.35062 /UG_TITLE=ESTs AI454580 1381522_at BI280528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280528 /DB_XREF=gi:14929402 /DB_XREF=UI-R-DC0-bzl-e-07-0-UI.s1 /CLONE=UI-R-DC0-bzl-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.39077.1 /TIER=ConsEnd /STK=2 /UG=Rn.39077 /UG_TITLE=ESTs BI280528 1381523_at BE112754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112754 /DB_XREF=gi:8504859 /DB_XREF=UI-R-BJ1-avo-d-09-0-UI.s1 /CLONE=UI-R-BJ1-avo-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.43150.1 /TIER=ConsEnd /STK=2 /UG=Rn.43150 /UG_TITLE=ESTs BE112754 1381524_at BF397008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397008 /DB_XREF=gi:11381991 /DB_XREF=UI-R-BS2-beb-g-07-0-UI.s1 /CLONE=UI-R-BS2-beb-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.58734.1 /TIER=ConsEnd /STK=2 /UG=Rn.58734 /UG_TITLE=ESTs BF397008 1381525_at BF419130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419130 /DB_XREF=gi:11407119 /DB_XREF=UI-R-BJ2-bqn-h-06-0-UI.s1 /CLONE=UI-R-BJ2-bqn-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.63477.1 /TIER=ConsEnd /STK=2 /UG=Rn.63477 /UG_TITLE=ESTs BF419130 1381526_at BI293073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293073 /DB_XREF=gi:14954219 /DB_XREF=UI-R-DK0-cdp-b-07-0-UI.s1 /CLONE=UI-R-DK0-cdp-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.16053.1 /TIER=ConsEnd /STK=2 /UG=Rn.16053 /UG_TITLE=ESTs BI293073 par-6 (partitioning defective 6,) homolog alpha (C. elegans) Pard6a 307799 NM_001003653 /// NM_001003654 0007049 // cell cycle // inferred from electronic annotation /// 0045217 // cell-cell junction maintenance // inferred from electronic annotation /// 0045217 // cell-cell junction maintenance // not recorded /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0005923 // tight junction // not recorded /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0005080 // protein kinase C binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from electronic annotation /// 0017048 // Rho GTPase binding // not recorded /// 0030742 // GTP-dependent protein binding // inferred from electronic annotation /// 0030742 // GTP-dependent protein binding // not recorded 1381527_at AI535521 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535521 /DB_XREF=gi:4449656 /DB_XREF=UI-R-C3-sq-g-09-0-UI.s1 /CLONE=UI-R-C3-sq-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.20736.1 /TIER=ConsEnd /STK=2 /UG=Rn.20736 /UG_TITLE=ESTs AI535521 1381528_at BF387076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387076 /DB_XREF=gi:11371900 /DB_XREF=UI-R-CA1-bbp-h-11-0-UI.s1 /CLONE=UI-R-CA1-bbp-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.57699.1 /TIER=ConsEnd /STK=2 /UG=Rn.57699 /UG_TITLE=ESTs BF387076 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 St3gal2 64442 NM_031695 0006486 // protein glycosylation // inferred from direct assay /// 0006486 // protein glycosylation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0003836 // beta-galactoside alpha-2,3-sialyltransferase activity // inferred from electronic annotation /// 0008373 // sialyltransferase activity // inferred from direct assay /// 0008373 // sialyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1381529_at AA997407 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997407 /DB_XREF=gi:4283321 /DB_XREF=UI-R-C0-hr-e-05-0-UI.s1 /CLONE=UI-R-C0-hr-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.58485.1 /TIER=ConsEnd /STK=2 /UG=Rn.58485 /UG_TITLE=ESTs AA997407 1381530_at AI599482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599482 /DB_XREF=gi:4608530 /DB_XREF=EST251185 /CLONE=REMDX67 /FEA=EST /CNT=2 /TID=Rn.40435.1 /TIER=ConsEnd /STK=2 /UG=Rn.40435 /UG_TITLE=ESTs AI599482 1381531_at BE100194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100194 /DB_XREF=gi:8492082 /DB_XREF=UI-R-BJ1-ats-g-07-0-UI.s1 /CLONE=UI-R-BJ1-ats-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.48974.1 /TIER=ConsEnd /STK=2 /UG=Rn.48974 /UG_TITLE=ESTs BE100194 1381532_at BE107493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107493 /DB_XREF=gi:8499598 /DB_XREF=UI-R-BS1-ayu-d-01-0-UI.s1 /CLONE=UI-R-BS1-ayu-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.21372.1 /TIER=ConsEnd /STK=2 /UG=Rn.21372 /UG_TITLE=ESTs BE107493 1381533_at AI144754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144754 /DB_XREF=gi:3666553 /DB_XREF=UI-R-BT0-po-h-03-0-UI.s1 /CLONE=UI-R-BT0-po-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.27670.1 /TIER=ConsEnd /STK=2 /UG=Rn.27670 /UG_TITLE=ESTs, Weakly similar to TRANSFORMING PROTEIN RHOB (R.norvegicus) AI144754 Rho family GTPase 1 Rnd1 362993 NM_001013222 0007015 // actin filament organization // inferred from electronic annotation /// 0007015 // actin filament organization // not recorded /// 0007162 // negative regulation of cell adhesion // inferred from electronic annotation /// 0007162 // negative regulation of cell adhesion // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0016322 // neuron remodeling // inferred from electronic annotation /// 0016322 // neuron remodeling // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1381534_at BI278449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278449 /DB_XREF=gi:14925302 /DB_XREF=UI-R-CZ0-byg-g-06-0-UI.s1 /CLONE=UI-R-CZ0-byg-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.20386.1 /TIER=ConsEnd /STK=2 /UG=Rn.20386 /UG_TITLE=ESTs BI278449 1381535_at AI715442 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715442 /DB_XREF=gi:5032695 /DB_XREF=UI-R-Y0-abm-f-03-0-UI.s1 /CLONE=UI-R-Y0-abm-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.27456.1 /TIER=ConsEnd /STK=2 /UG=Rn.27456 /UG_TITLE=ESTs AI715442 1381536_at AI501200 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501200 /DB_XREF=gi:4399051 /DB_XREF=UI-R-C2p-rt-h-07-0-UI.s1 /CLONE=UI-R-C2p-rt-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.38361.1 /TIER=ConsEnd /STK=2 /UG=Rn.38361 /UG_TITLE=ESTs, Weakly similar to P2CA RAT PROTEIN PHOSPHATASE 2C ALPHA ISOFORM (R.norvegicus) AI501200 1381537_at BF402262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402262 /DB_XREF=gi:11390237 /DB_XREF=UI-R-CA0-bhq-d-05-0-UI.s1 /CLONE=UI-R-CA0-bhq-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.41871.1 /TIER=ConsEnd /STK=2 /UG=Rn.41871 /UG_TITLE=ESTs BF402262 kinesin light chain 3 Klc3 171549 NM_138520 0008152 // metabolic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005871 // kinesin complex // inferred from electronic annotation /// 0005871 // kinesin complex // traceable author statement /// 0005874 // microtubule // inferred from electronic annotation /// 0009434 // microtubule-based flagellum // inferred from electronic annotation /// 0009434 // microtubule-based flagellum // not recorded /// 0035253 // ciliary rootlet // inferred from electronic annotation /// 0035253 // ciliary rootlet // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0008808 // cardiolipin synthase activity // inferred from electronic annotation /// 0008808 // cardiolipin synthase activity // not recorded /// 0019894 // kinesin binding // inferred from electronic annotation /// 0019894 // kinesin binding // not recorded 1381538_at BF391531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391531 /DB_XREF=gi:11376348 /DB_XREF=UI-R-CA1-bcs-b-02-0-UI.s1 /CLONE=UI-R-CA1-bcs-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.57525.1 /TIER=ConsEnd /STK=2 /UG=Rn.57525 /UG_TITLE=ESTs BF391531 1381539_at BI294601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294601 /DB_XREF=gi:14957212 /DB_XREF=UI-R-DK0-cem-c-10-0-UI.s1 /CLONE=UI-R-DK0-cem-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.79603.1 /TIER=ConsEnd /STK=2 /UG=Rn.79603 /UG_TITLE=ESTs BI294601 1381540_at AI179072 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179072 /DB_XREF=gi:3729710 /DB_XREF=EST222755 /CLONE=RSPCB29 /FEA=EST /CNT=2 /TID=Rn.16029.1 /TIER=ConsEnd /STK=2 /UG=Rn.16029 /UG_TITLE=ESTs AI179072 Hypothetical protein LOC689019 LOC689019 689019 XM_001069197 1381541_at BE100537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100537 /DB_XREF=gi:8492431 /DB_XREF=UI-R-BJ1-aue-f-01-0-UI.s1 /CLONE=UI-R-BJ1-aue-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.19903.1 /TIER=ConsEnd /STK=2 /UG=Rn.19903 /UG_TITLE=ESTs BE100537 1381542_at AI704885 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI704885 /DB_XREF=gi:4992785 /DB_XREF=UI-R-AC0-yq-e-05-0-UI.s1 /CLONE=UI-R-AC0-yq-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.20828.1 /TIER=ConsEnd /STK=2 /UG=Rn.20828 /UG_TITLE=ESTs AI704885 UBX domain protein 4 Ubxn4 304766 NM_001012025 0006986 // response to unfolded protein // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1381543_at BI288751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288751 /DB_XREF=gi:14945635 /DB_XREF=UI-R-DK0-cde-e-05-0-UI.s1 /CLONE=UI-R-DK0-cde-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.27294.1 /TIER=ConsEnd /STK=2 /UG=Rn.27294 /UG_TITLE=ESTs BI288751 solute carrier family 38, member 7 Slc38a7 291840 NM_001003705 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1381544_at BI294859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294859 /DB_XREF=gi:14957724 /DB_XREF=UI-R-DK0-ced-a-02-0-UI.s1 /CLONE=UI-R-DK0-ced-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.29287.1 /TIER=ConsEnd /STK=2 /UG=Rn.29287 /UG_TITLE=ESTs BI294859 similar to CHCHD4 protein RGD1564534 501576 NR_028321 1381545_at BG376225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376225 /DB_XREF=gi:13300697 /DB_XREF=UI-R-CU0-bus-a-01-0-UI.s1 /CLONE=UI-R-CU0-bus-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.53936.1 /TIER=ConsEnd /STK=2 /UG=Rn.53936 /UG_TITLE=ESTs BG376225 1381546_at BI290770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290770 /DB_XREF=gi:14949656 /DB_XREF=UI-R-DK0-cga-b-11-0-UI.s1 /CLONE=UI-R-DK0-cga-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.56459.1 /TIER=ConsEnd /STK=2 /UG=Rn.56459 /UG_TITLE=ESTs BI290770 1381547_at BI295803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295803 /DB_XREF=gi:14959616 /DB_XREF=UI-R-DK0-cfa-g-11-0-UI.s1 /CLONE=UI-R-DK0-cfa-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.66215.1 /TIER=ConsEnd /STK=2 /UG=Rn.66215 /UG_TITLE=ESTs BI295803 1381548_at BF397673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397673 /DB_XREF=gi:11382657 /DB_XREF=UI-R-BS2-bed-c-07-0-UI.s1 /CLONE=UI-R-BS2-bed-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.66391.1 /TIER=ConsEnd /STK=2 /UG=Rn.66391 /UG_TITLE=ESTs, Weakly similar to NKX1_RAT Sodiumpotassiumcalcium exchanger 1 precursor (Na(+)K(+)Ca(2+)-exchange protein 1) (Retinal rod Na-Ca+K exchanger) (R.norvegicus) BF397673 golgi integral membrane protein 4 Golim4 310526 NM_001191567 /// XM_001062460 /// XM_001062524 /// XM_001070329 /// XM_002725982 /// XM_002729046 /// XM_227268 0006810 // transport // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 1381549_at BG376818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376818 /DB_XREF=gi:13301290 /DB_XREF=UI-R-CA1-blh-e-03-0-UI.s1 /CLONE=UI-R-CA1-blh-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.66428.1 /TIER=ConsEnd /STK=2 /UG=Rn.66428 /UG_TITLE=ESTs BG376818 1381550_at BE095969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095969 /DB_XREF=gi:8486900 /DB_XREF=UI-R-BU0-apd-g-08-0-UI.s1 /CLONE=UI-R-BU0-apd-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.66535.1 /TIER=ConsEnd /STK=2 /UG=Rn.66535 /UG_TITLE=ESTs BE095969 1381551_at BG378461 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378461 /DB_XREF=gi:13302933 /DB_XREF=UI-R-CU0-bvj-d-03-0-UI.s1 /CLONE=UI-R-CU0-bvj-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.66571.1 /TIER=ConsEnd /STK=2 /UG=Rn.66571 /UG_TITLE=ESTs BG378461 alkB, alkylation repair homolog (E. coli) Alkbh 362766 NM_001108718 0006281 // DNA repair // inferred from electronic annotation 1381552_at BG380975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380975 /DB_XREF=gi:13305412 /DB_XREF=UI-R-CT0-bul-c-03-0-UI.s1 /CLONE=UI-R-CT0-bul-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.66784.1 /TIER=ConsEnd /STK=2 /UG=Rn.66784 /UG_TITLE=ESTs BG380975 1381553_at BG371725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371725 /DB_XREF=gi:13268262 /DB_XREF=UI-R-CV0-brh-e-02-0-UI.s1 /CLONE=UI-R-CV0-brh-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.66865.1 /TIER=ConsEnd /STK=2 /UG=Rn.66865 /UG_TITLE=ESTs BG371725 1381554_at BE097095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097095 /DB_XREF=gi:8488026 /DB_XREF=UI-R-BO1-apt-b-04-0-UI.s1 /CLONE=UI-R-BO1-apt-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.68350.1 /TIER=ConsEnd /STK=2 /UG=Rn.68350 /UG_TITLE=ESTs BE097095 1381555_at BI288686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288686 /DB_XREF=gi:14945514 /DB_XREF=UI-R-DK0-cdd-g-05-0-UI.s1 /CLONE=UI-R-DK0-cdd-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.71395.1 /TIER=ConsEnd /STK=2 /UG=Rn.71395 /UG_TITLE=ESTs BI288686 1381556_at BI303853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303853 /DB_XREF=gi:14980133 /DB_XREF=UI-R-DS0-cjd-k-12-0-UI.s1 /CLONE=UI-R-DS0-cjd-k-12-0-UI /FEA=EST /CNT=2 /TID=Rn.73586.1 /TIER=ConsEnd /STK=2 /UG=Rn.73586 /UG_TITLE=ESTs BI303853 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 Ddx60 306409 XM_001072319 /// XM_224795 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation 1381557_at BI289045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289045 /DB_XREF=gi:14946213 /DB_XREF=UI-R-DK0-cdh-h-06-0-UI.s1 /CLONE=UI-R-DK0-cdh-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.73873.1 /TIER=ConsEnd /STK=2 /UG=Rn.73873 /UG_TITLE=ESTs BI289045 guanine nucleotide binding protein, alpha 14 Gna14 309242 NM_001013151 0006471 // protein ADP-ribosylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation 1381558_at BG374759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374759 /DB_XREF=gi:13299231 /DB_XREF=UI-R-CV1-bsv-b-05-0-UI.s1 /CLONE=UI-R-CV1-bsv-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.76398.1 /TIER=ConsEnd /STK=2 /UG=Rn.76398 /UG_TITLE=ESTs BG374759 1381559_at BI301298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301298 /DB_XREF=gi:14977578 /DB_XREF=UI-R-DL0-cio-d-09-0-UI.s1 /CLONE=UI-R-DL0-cio-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.76827.1 /TIER=ConsEnd /STK=2 /UG=Rn.76827 /UG_TITLE=ESTs BI301298 Mitochondrial translation optimization 1 homolog (S. cerevisiae) Mto1 300852 NM_001106841 0002098 // tRNA wobble uridine modification // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1381560_at BM392301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392301 /DB_XREF=gi:18192354 /DB_XREF=UI-R-DO1-ckp-d-08-0-UI.s1 /CLONE=UI-R-DO1-ckp-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.77403.1 /TIER=ConsEnd /STK=2 /UG=Rn.77403 /UG_TITLE=ESTs BM392301 1381561_at BI283817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283817 /DB_XREF=gi:14935933 /DB_XREF=UI-R-CX0s-ccx-a-09-0-UI.s1 /CLONE=UI-R-CX0s-ccx-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.78423.1 /TIER=ConsEnd /STK=2 /UG=Rn.78423 /UG_TITLE=ESTs BI283817 1381562_at BI284650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284650 /DB_XREF=gi:14937507 /DB_XREF=UI-R-DE0-cac-e-12-0-UI.s1 /CLONE=UI-R-DE0-cac-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.78502.1 /TIER=ConsEnd /STK=2 /UG=Rn.78502 /UG_TITLE=ESTs BI284650 Netrin 5 Ntn5 308587 NM_001173526 /// XM_001080773 /// XM_218653 0005515 // protein binding // inferred from electronic annotation 1381563_at BI294761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294761 /DB_XREF=gi:14957530 /DB_XREF=UI-R-DK0-ceb-g-11-0-UI.s1 /CLONE=UI-R-DK0-ceb-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.79622.1 /TIER=ConsEnd /STK=2 /UG=Rn.79622 /UG_TITLE=ESTs, Weakly similar to A46302 PTB-associated splicing factor, long form (H.sapiens) BI294761 1381564_at AI763657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763657 /DB_XREF=gi:5209592 /DB_XREF=UI-R-Y0-acj-e-10-0-UI.s1 /CLONE=UI-R-Y0-acj-e-10-0-UI /FEA=EST /CNT=4 /TID=Rn.16863.1 /TIER=ConsEnd /STK=0 /UG=Rn.16863 /UG_TITLE=ESTs AI763657 glomulin, FKBP associated protein Glmn 289437 NM_001105993 0001570 // vasculogenesis // not recorded /// 0040029 // regulation of gene expression, epigenetic // not recorded /// 0042130 // negative regulation of T cell proliferation // not recorded /// 0042327 // positive regulation of phosphorylation // not recorded /// 0042692 // muscle cell differentiation // not recorded /// 0045086 // positive regulation of interleukin-2 biosynthetic process // not recorded /// 0050715 // positive regulation of cytokine secretion // not recorded 0005171 // hepatocyte growth factor receptor binding // not recorded /// 0005515 // protein binding // not recorded 1381565_at BI297031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297031 /DB_XREF=gi:14962040 /DB_XREF=UI-R-DK0-cgk-d-12-0-UI.s1 /CLONE=UI-R-DK0-cgk-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.79863.1 /TIER=ConsEnd /STK=2 /UG=Rn.79863 /UG_TITLE=ESTs BI297031 1381566_at BE097780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097780 /DB_XREF=gi:8488711 /DB_XREF=UI-R-BO1-aqb-f-06-0-UI.s1 /CLONE=UI-R-BO1-aqb-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.49692.1 /TIER=ConsEnd /STK=2 /UG=Rn.49692 /UG_TITLE=ESTs, Highly similar to FXF1 MOUSE FORKHEAD PROTEIN F1 (M.musculus) BE097780 1381567_at BG381715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381715 /DB_XREF=gi:13306187 /DB_XREF=UI-R-CT0-bue-f-01-0-UI.s1 /CLONE=UI-R-CT0-bue-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.63649.1 /TIER=ConsEnd /STK=2 /UG=Rn.63649 /UG_TITLE=ESTs BG381715 zinc finger with UFM1-specific peptidase domain Zufsp 294390 NM_001008308 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1381568_at AI138111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI138111 /DB_XREF=gi:3638888 /DB_XREF=UI-R-C2p-om-f-02-0-UI.s1 /CLONE=UI-R-C2p-om-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.27594.1 /TIER=ConsEnd /STK=2 /UG=Rn.27594 /UG_TITLE=ESTs, Moderately similar to JC7122 serine (M.musculus) AI138111 NIMA (never in mitosis gene a)-related kinase 4 Nek4 306252 NM_001013134 0006468 // protein phosphorylation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1381569_at BE111190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111190 /DB_XREF=gi:8503295 /DB_XREF=UI-R-BJ1-auv-f-05-0-UI.s1 /CLONE=UI-R-BJ1-auv-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.48983.1 /TIER=ConsEnd /STK=2 /UG=Rn.48983 /UG_TITLE=ESTs BE111190 1381570_at BI293518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293518 /DB_XREF=gi:14955088 /DB_XREF=UI-R-DK0-cdr-d-07-0-UI.s1 /CLONE=UI-R-DK0-cdr-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.56435.1 /TIER=ConsEnd /STK=2 /UG=Rn.56435 /UG_TITLE=ESTs BI293518 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta Nfkbid 308496 XM_001079086 /// XM_218484 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0033085 // negative regulation of T cell differentiation in thymus // not recorded /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0070245 // positive regulation of thymocyte apoptosis // not recorded 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded /// 0051059 // NF-kappaB binding // not recorded 1381571_at BE108395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108395 /DB_XREF=gi:8500500 /DB_XREF=UI-R-BS1-ayv-g-07-0-UI.s1 /CLONE=UI-R-BS1-ayv-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.79507.1 /TIER=ConsEnd /STK=2 /UG=Rn.79507 /UG_TITLE=ESTs, Weakly similar to ZF94_RAT ZINC FINGER PROTEIN 94 (ZFP-94) (ZINC FINGER PROTEIN Y1) (RLZF-Y) (R.norvegicus) BE108395 1381572_at BG375279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375279 /DB_XREF=gi:13299751 /DB_XREF=UI-R-CV1-bsy-e-04-0-UI.s1 /CLONE=UI-R-CV1-bsy-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.12333.1 /TIER=ConsEnd /STK=2 /UG=Rn.12333 /UG_TITLE=ESTs BG375279 similar to RIKEN cDNA 1810065E05 RGD1565787 308429 NM_001107488 0005576 // extracellular region // inferred from electronic annotation 0004859 // phospholipase inhibitor activity // inferred from electronic annotation 1381573_at AW527736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527736 /DB_XREF=gi:7170150 /DB_XREF=UI-R-BT1-ajy-f-01-0-UI.s1 /CLONE=UI-R-BT1-ajy-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.46642.1 /TIER=ConsEnd /STK=2 /UG=Rn.46642 /UG_TITLE=ESTs, Weakly similar to GLUTATHIONE S-TRANSFERASE YC-2 (R.norvegicus) AW527736 similar to class-alpha glutathione S-transferase RGD1562107 363205 XM_001070946 /// XM_343545 0008152 // metabolic process // inferred from electronic annotation 0004364 // glutathione transferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1381574_at BF403907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403907 /DB_XREF=gi:11391882 /DB_XREF=UI-R-CA1-bjd-f-05-0-UI.s1 /CLONE=UI-R-CA1-bjd-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.60387.1 /TIER=ConsEnd /STK=2 /UG=Rn.60387 /UG_TITLE=ESTs BF403907 transmembrane protein 195 Tmem195 362732 NM_001135899 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006643 // membrane lipid metabolic process // inferred from sequence or structural similarity /// 0046485 // ether lipid metabolic process // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005506 // iron ion binding // inferred from sequence or structural similarity /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050479 // glyceryl-ether monooxygenase activity // inferred from sequence or structural similarity 1381575_at AI638986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI638986 /DB_XREF=gi:4700020 /DB_XREF=rx00108s /CLONE=rx00108 /FEA=EST /CNT=2 /TID=Rn.15517.1 /TIER=ConsEnd /STK=2 /UG=Rn.15517 /UG_TITLE=ESTs, Moderately similar to LAS1 MOUSE LIM AND SH3 DOMAIN PROTEIN 1 (M.musculus) AI638986 nebulin Neb 311029 XM_001056398 /// XM_229925 0030016 // myofibril // inferred from direct assay /// 0030018 // Z disc // not recorded 1381576_at BE105801 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105801 /DB_XREF=gi:8497903 /DB_XREF=UI-R-BX0-ary-c-04-0-UI.s1 /CLONE=UI-R-BX0-ary-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.50825.1 /TIER=ConsEnd /STK=2 /UG=Rn.50825 /UG_TITLE=ESTs BE105801 phosphoinositide-3-kinase, class 2, beta polypeptide Pik3c2b 289021 NM_001105951 0007154 // cell communication // inferred from electronic annotation /// 0043491 // protein kinase B signaling cascade // not recorded /// 0046834 // lipid phosphorylation // not recorded /// 0046854 // phosphoinositide phosphorylation // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation 0005942 // phosphoinositide 3-kinase complex // inferred from electronic annotation /// 0030139 // endocytic vesicle // not recorded 0001727 // lipid kinase activity // not recorded /// 0004428 // inositol or phosphatidylinositol kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1381577_at AI170131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170131 /DB_XREF=gi:3710171 /DB_XREF=EST216053 /CLONE=RLUCC76 /FEA=EST /CNT=2 /TID=Rn.28383.1 /TIER=ConsEnd /STK=2 /UG=Rn.28383 /UG_TITLE=ESTs AI170131 1381578_at BF407867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407867 /DB_XREF=gi:11395842 /DB_XREF=UI-R-BJ2-bqx-f-06-0-UI.s1 /CLONE=UI-R-BJ2-bqx-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.61094.1 /TIER=ConsEnd /STK=2 /UG=Rn.61094 /UG_TITLE=ESTs BF407867 dual specificity phosphatase 13 Dusp13 361002 NM_001007006 /// NM_001162408 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0005737 // cytoplasm // not recorded 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1381579_at BF386959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386959 /DB_XREF=gi:11371783 /DB_XREF=UI-R-CA1-bbj-f-05-0-UI.s1 /CLONE=UI-R-CA1-bbj-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.63164.1 /TIER=ConsEnd /STK=2 /UG=Rn.63164 /UG_TITLE=ESTs BF386959 1381580_at BF418169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418169 /DB_XREF=gi:11406158 /DB_XREF=UI-R-CN0-blt-c-12-0-UI.s1 /CLONE=UI-R-CN0-blt-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.63379.1 /TIER=ConsEnd /STK=2 /UG=Rn.63379 /UG_TITLE=ESTs BF418169 three prime repair exonuclease 2 Trex2 309275 NM_001107580 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation 1381581_at AW535025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535025 /DB_XREF=gi:7177439 /DB_XREF=UI-R-BS0-aoa-d-03-0-UI.s1 /CLONE=UI-R-BS0-aoa-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.18294.1 /TIER=ConsEnd /STK=2 /UG=Rn.18294 /UG_TITLE=ESTs AW535025 1381582_at AI548608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548608 /DB_XREF=gi:4466096 /DB_XREF=UI-R-C3-te-a-09-0-UI.s1 /CLONE=UI-R-C3-te-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.43178.1 /TIER=ConsEnd /STK=2 /UG=Rn.43178 /UG_TITLE=ESTs AI548608 1381583_at AW522965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522965 /DB_XREF=gi:7165350 /DB_XREF=UI-R-BO0-ahp-g-04-0-UI.s1 /CLONE=UI-R-BO0-ahp-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.45525.1 /TIER=ConsEnd /STK=2 /UG=Rn.45525 /UG_TITLE=ESTs AW522965 1381584_at BE109141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109141 /DB_XREF=gi:8501246 /DB_XREF=UI-R-BS1-azb-d-08-0-UI.s1 /CLONE=UI-R-BS1-azb-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.57701.1 /TIER=ConsEnd /STK=2 /UG=Rn.57701 /UG_TITLE=ESTs BE109141 1381585_at BF419665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419665 /DB_XREF=gi:11407654 /DB_XREF=UI-R-CA0-bpe-g-08-0-UI.s1 /CLONE=UI-R-CA0-bpe-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.62352.1 /TIER=ConsEnd /STK=2 /UG=Rn.62352 /UG_TITLE=ESTs BF419665 1381586_at BI296171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296171 /DB_XREF=gi:14960346 /DB_XREF=UI-R-DK0-cex-b-08-0-UI.s1 /CLONE=UI-R-DK0-cex-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.79792.1 /TIER=ConsEnd /STK=2 /UG=Rn.79792 /UG_TITLE=ESTs, Highly similar to T46423 hypothetical protein DKFZp434A0225.1 (H.sapiens) BI296171 ankyrin repeat and IBR domain containing 1 Ankib1 368062 NM_001134781 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1381587_at AI231910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231910 /DB_XREF=gi:3815790 /DB_XREF=EST228598 /CLONE=RHECP75 /FEA=EST /CNT=2 /TID=Rn.49928.1 /TIER=ConsEnd /STK=2 /UG=Rn.49928 /UG_TITLE=ESTs AI231910 1381588_at BG377308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377308 /DB_XREF=gi:13301780 /DB_XREF=UI-R-CU0-bux-h-10-0-UI.s1 /CLONE=UI-R-CU0-bux-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.56136.1 /TIER=ConsEnd /STK=2 /UG=Rn.56136 /UG_TITLE=ESTs BG377308 SFT2 domain containing 2 Sft2d2 360868 NM_001034011 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1381589_at BE096466 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096466 /DB_XREF=gi:8487397 /DB_XREF=UI-R-BU0-apg-e-01-0-UI.s1 /CLONE=UI-R-BU0-apg-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.68303.1 /TIER=ConsEnd /STK=2 /UG=Rn.68303 /UG_TITLE=ESTs BE096466 1381590_at BI295719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295719 /DB_XREF=gi:14959448 /DB_XREF=UI-R-DK0-ceu-g-10-0-UI.s1 /CLONE=UI-R-DK0-ceu-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.70329.1 /TIER=ConsEnd /STK=2 /UG=Rn.70329 /UG_TITLE=ESTs BI295719 1381591_at BI302903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302903 /DB_XREF=gi:14979188 /DB_XREF=UI-R-DO0-cix-i-09-0-UI.s1 /CLONE=UI-R-DO0-cix-i-09-0-UI /FEA=EST /CNT=2 /TID=Rn.20535.1 /TIER=ConsEnd /STK=2 /UG=Rn.20535 /UG_TITLE=ESTs BI302903 1381592_at AA926244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926244 /DB_XREF=gi:4237435 /DB_XREF=UI-R-A1-eq-d-11-0-UI.s1 /CLONE=UI-R-A1-eq-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.34442.1 /TIER=ConsEnd /STK=2 /UG=Rn.34442 /UG_TITLE=ESTs AA926244 1381593_x_at AW528743 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528743 /DB_XREF=gi:7171157 /DB_XREF=UI-R-BO1-ajo-g-10-0-UI.s1 /CLONE=UI-R-BO1-ajo-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.46989.1 /TIER=ConsEnd /STK=2 /UG=Rn.46989 /UG_TITLE=ESTs, Moderately similar to S04363 class II histocompatibility antigen RT1-B alpha chain precursor - rat (R.norvegicus) AW528743 RT1 class II, locus Ba RT1-Ba 309621 NM_001008831 0002504 // antigen processing and presentation of peptide or polysaccharide antigen via MHC class II // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // not recorded /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // not recorded /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // inferred from electronic annotation /// 0045582 // positive regulation of T cell differentiation // not recorded /// 0045582 // positive regulation of T cell differentiation // inferred from electronic annotation /// 0048002 // antigen processing and presentation of peptide antigen // not recorded /// 0048002 // antigen processing and presentation of peptide antigen // inferred from electronic annotation 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042613 // MHC class II protein complex // inferred from electronic annotation /// 0042613 // MHC class II protein complex // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042605 // peptide antigen binding // not recorded /// 0042605 // peptide antigen binding // inferred from electronic annotation 1381594_at AW526802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526802 /DB_XREF=gi:7169216 /DB_XREF=UI-R-BO1-aje-b-12-0-UI.s1 /CLONE=UI-R-BO1-aje-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.49095.1 /TIER=ConsEnd /STK=2 /UG=Rn.49095 /UG_TITLE=ESTs AW526802 1381595_at BF416232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416232 /DB_XREF=gi:11404221 /DB_XREF=UI-R-CA0-bkr-a-11-0-UI.s1 /CLONE=UI-R-CA0-bkr-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.62959.1 /TIER=ConsEnd /STK=2 /UG=Rn.62959 /UG_TITLE=ESTs BF416232 1381596_at BG379279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379279 /DB_XREF=gi:13303751 /DB_XREF=UI-R-BT1-bnn-g-07-0-UI.s1 /CLONE=UI-R-BT1-bnn-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.66665.1 /TIER=ConsEnd /STK=2 /UG=Rn.66665 /UG_TITLE=ESTs BG379279 1381597_at AW524894 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524894 /DB_XREF=gi:7167279 /DB_XREF=UI-R-BO0-aid-e-07-0-UI.s1 /CLONE=UI-R-BO0-aid-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.67762.1 /TIER=ConsEnd /STK=2 /UG=Rn.67762 /UG_TITLE=ESTs, Weakly similar to DHA4 RAT FATTY ALDEHYDE DEHYDROGENASE (R.norvegicus) AW524894 aldehyde dehydrogenase 3 family, member B2 Aldh3b2 688800 XM_001068348 0006081 // cellular aldehyde metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0004030 // aldehyde dehydrogenase [NAD(P)+] activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1381598_at AA818165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818165 /DB_XREF=gi:4198678 /DB_XREF=UI-R-A0-am-c-11-0-UI.s1 /CLONE=UI-R-A0-am-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.57531.1 /TIER=ConsEnd /STK=2 /UG=Rn.57531 /UG_TITLE=ESTs AA818165 DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 Ddx50 361848 NM_001013198 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1381599_at BF414434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414434 /DB_XREF=gi:11402418 /DB_XREF=UI-R-CA0-bpa-c-12-0-UI.s1 /CLONE=UI-R-CA0-bpa-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.61640.1 /TIER=ConsEnd /STK=2 /UG=Rn.61640 /UG_TITLE=ESTs BF414434 1381600_at BF417325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417325 /DB_XREF=gi:11405314 /DB_XREF=UI-R-CN0-bky-h-02-0-UI.s1 /CLONE=UI-R-CN0-bky-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.61168.1 /TIER=ConsEnd /STK=2 /UG=Rn.61168 /UG_TITLE=ESTs BF417325 1381601_at BI293235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293235 /DB_XREF=gi:14954544 /DB_XREF=UI-R-DK0-cdm-d-09-0-UI.s1 /CLONE=UI-R-DK0-cdm-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.21574.1 /TIER=ConsEnd /STK=2 /UG=Rn.21574 /UG_TITLE=ESTs BI293235 1381602_at AI502076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502076 /DB_XREF=gi:4399927 /DB_XREF=UI-R-C1-kc-e-02-0-UI.s1 /CLONE=UI-R-C1-kc-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.36244.1 /TIER=ConsEnd /STK=2 /UG=Rn.36244 /UG_TITLE=ESTs AI502076 Midline 1 Mid1 54252 NM_022927 0007026 // negative regulation of microtubule depolymerization // inferred from electronic annotation /// 0007026 // negative regulation of microtubule depolymerization // not recorded /// 0032874 // positive regulation of stress-activated MAPK cascade // inferred from electronic annotation /// 0032874 // positive regulation of stress-activated MAPK cascade // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // not recorded /// 0015630 // microtubule cytoskeleton // not recorded /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1381603_at AW524138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524138 /DB_XREF=gi:7166523 /DB_XREF=UI-R-BO0-ahr-h-11-0-UI.s1 /CLONE=UI-R-BO0-ahr-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.45786.1 /TIER=ConsEnd /STK=2 /UG=Rn.45786 /UG_TITLE=ESTs AW524138 hypothetical protein LOC502684 LOC502684 502684 NM_001025060 1381604_at AI549557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549557 /DB_XREF=gi:4467045 /DB_XREF=UI-R-C3-tt-c-12-0-UI.s1 /CLONE=UI-R-C3-tt-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.64787.1 /TIER=ConsEnd /STK=2 /UG=Rn.64787 /UG_TITLE=ESTs AI549557 hypothetical protein LOC100361389 LOC100361389 100361389 XM_002727821 1381605_at AW521619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521619 /DB_XREF=gi:7164004 /DB_XREF=UI-R-BO0-ago-g-12-0-UI.s1 /CLONE=UI-R-BO0-ago-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.67622.1 /TIER=ConsEnd /STK=2 /UG=Rn.67622 /UG_TITLE=ESTs, Weakly similar to UBP5 MOUSE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5 (M.musculus) AW521619 ubiquitin specific protease 13 (isopeptidase T-3) Usp13 310306 NM_001107665 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1381606_at AI044428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044428 /DB_XREF=gi:3291331 /DB_XREF=UI-R-C1-jw-b-10-0-UI.s1 /CLONE=UI-R-C1-jw-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.23495.1 /TIER=ConsEnd /STK=2 /UG=Rn.23495 /UG_TITLE=ESTs AI044428 stimulated by retinoic acid gene 6 Stra6 363071 NM_001029924 0006810 // transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0004872 // receptor activity // inferred from electronic annotation 1381607_at AI145754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145754 /DB_XREF=gi:3667553 /DB_XREF=UI-R-BT0-py-b-11-0-UI.s1 /CLONE=UI-R-BT0-py-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.28602.1 /TIER=ConsEnd /STK=2 /UG=Rn.28602 /UG_TITLE=ESTs AI145754 zinc finger protein 407 Zfp407 307213 XM_001061052 /// XM_225679 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1381608_at BF394383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394383 /DB_XREF=gi:11379248 /DB_XREF=UI-R-CA0-bfv-b-12-0-UI.s1 /CLONE=UI-R-CA0-bfv-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.58274.1 /TIER=ConsEnd /STK=2 /UG=Rn.58274 /UG_TITLE=ESTs BF394383 1381609_at AI710364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI710364 /DB_XREF=gi:5000140 /DB_XREF=UI-R-AD1-zu-g-11-0-UI.s1 /CLONE=UI-R-AD1-zu-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.12416.1 /TIER=ConsEnd /STK=2 /UG=Rn.12416 /UG_TITLE=ESTs AI710364 zinc finger protein 335 Zfp335 259270 XM_001070873 /// XM_342578 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation 1381610_at BF402073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402073 /DB_XREF=gi:11390089 /DB_XREF=UI-R-CA0-bhw-b-10-0-UI.s1 /CLONE=UI-R-CA0-bhw-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.59973.1 /TIER=ConsEnd /STK=2 /UG=Rn.59973 /UG_TITLE=ESTs BF402073 1381611_at BF396355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396355 /DB_XREF=gi:11381327 /DB_XREF=UI-R-BS2-bdx-b-09-0-UI.s1 /CLONE=UI-R-BS2-bdx-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.17859.1 /TIER=ConsEnd /STK=2 /UG=Rn.17859 /UG_TITLE=ESTs, Weakly similar to T12528 hypothetical protein DKFZp434N093.1 (H.sapiens) BF396355 AT hook containing transcription factor 1 /// transcription factor ELYS-like Ahctf1 /// LOC100365024 100365024 /// 360886 XM_341161 /// XR_085605 0000910 // cytokinesis // not recorded /// 0045449 // regulation of transcription // not recorded /// 0051292 // nuclear pore complex assembly // not recorded 0000777 // condensed chromosome kinetochore // not recorded /// 0000785 // chromatin // not recorded /// 0005634 // nucleus // not recorded /// 0005643 // nuclear pore // not recorded /// 0005737 // cytoplasm // not recorded /// 0016363 // nuclear matrix // not recorded /// 0031080 // Nup107-160 complex // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // not recorded 1381612_at BF407802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407802 /DB_XREF=gi:11395777 /DB_XREF=UI-R-BJ2-brd-f-12-0-UI.s1 /CLONE=UI-R-BJ2-brd-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.18944.1 /TIER=ConsEnd /STK=2 /UG=Rn.18944 /UG_TITLE=ESTs BF407802 1381613_at BI290213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290213 /DB_XREF=gi:14948578 /DB_XREF=UI-R-DK0-cft-e-09-0-UI.s1 /CLONE=UI-R-DK0-cft-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.24534.1 /TIER=ConsEnd /STK=2 /UG=Rn.24534 /UG_TITLE=ESTs BI290213 1381614_at BF406227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406227 /DB_XREF=gi:11394202 /DB_XREF=UI-R-CA1-bjf-g-16-0-UI.s1 /CLONE=UI-R-CA1-bjf-g-16-0-UI /FEA=EST /CNT=2 /TID=Rn.62007.1 /TIER=ConsEnd /STK=2 /UG=Rn.62007 /UG_TITLE=ESTs BF406227 1381615_at AA819292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819292 /DB_XREF=gi:4228431 /DB_XREF=UI-R-A0-aw-c-10-0-UI.s1 /CLONE=UI-R-A0-aw-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.1973.1 /TIER=ConsEnd /STK=2 /UG=Rn.1973 /UG_TITLE=ESTs AA819292 1381616_at AI072140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072140 /DB_XREF=gi:3398334 /DB_XREF=UI-R-C2-mz-b-11-0-UI.s1 /CLONE=UI-R-C2-mz-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.20073.1 /TIER=ConsEnd /STK=2 /UG=Rn.20073 /UG_TITLE=ESTs AI072140 DEAD (Asp-Glu-Ala-As) box polypeptide 19B Ddx19b 690693 NM_001005895 /// XM_001075251 /// XM_002725392 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1381617_at BE102030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102030 /DB_XREF=gi:8494128 /DB_XREF=UI-R-BO1-aqe-e-05-0-UI.s1 /CLONE=UI-R-BO1-aqe-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.43020.1 /TIER=ConsEnd /STK=2 /UG=Rn.43020 /UG_TITLE=ESTs BE102030 1381618_at BE107817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107817 /DB_XREF=gi:8499922 /DB_XREF=UI-R-CA0-awx-c-02-0-UI.s1 /CLONE=UI-R-CA0-awx-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.51299.1 /TIER=ConsEnd /STK=2 /UG=Rn.51299 /UG_TITLE=ESTs BE107817 Similar to calcium-binding tyrosine-phosphorylation regulated protein isoform 2 rCG_24939 686189 NM_001143893 0007165 // signal transduction // inferred from electronic annotation 0008603 // cAMP-dependent protein kinase regulator activity // inferred from electronic annotation 1381619_at BE116003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116003 /DB_XREF=gi:8508108 /DB_XREF=UI-R-BS1-axy-d-04-0-UI.s1 /CLONE=UI-R-BS1-axy-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.52598.1 /TIER=ConsEnd /STK=2 /UG=Rn.52598 /UG_TITLE=ESTs BE116003 1381620_at BF389656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389656 /DB_XREF=gi:11374491 /DB_XREF=UI-R-BS2-bdn-c-01-0-UI.s1 /CLONE=UI-R-BS2-bdn-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.57747.1 /TIER=ConsEnd /STK=2 /UG=Rn.57747 /UG_TITLE=ESTs BF389656 1381621_at BF386153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386153 /DB_XREF=gi:11370977 /DB_XREF=UI-R-CA1-bba-f-02-0-UI.s1 /CLONE=UI-R-CA1-bba-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.60024.1 /TIER=ConsEnd /STK=2 /UG=Rn.60024 /UG_TITLE=ESTs BF386153 1381622_at BF416192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416192 /DB_XREF=gi:11404181 /DB_XREF=UI-R-CA1-bki-d-09-0-UI.s1 /CLONE=UI-R-CA1-bki-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.62948.1 /TIER=ConsEnd /STK=2 /UG=Rn.62948 /UG_TITLE=ESTs BF416192 1381623_at BF391476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391476 /DB_XREF=gi:11376370 /DB_XREF=UI-R-CA1-bcs-d-02-0-UI.s1 /CLONE=UI-R-CA1-bcs-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.63428.1 /TIER=ConsEnd /STK=2 /UG=Rn.63428 /UG_TITLE=ESTs BF391476 splicing factor, arginine/serine-rich 4 Sfrs4 362612 NM_001108685 0008380 // RNA splicing // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1381624_at BF391717 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391717 /DB_XREF=gi:11376571 /DB_XREF=UI-R-CA1-bct-f-04-0-UI.s1 /CLONE=UI-R-CA1-bct-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.64259.1 /TIER=ConsEnd /STK=2 /UG=Rn.64259 /UG_TITLE=ESTs BF391717 1381625_at AI146135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146135 /DB_XREF=gi:3667934 /DB_XREF=UI-R-BT0-qh-g-02-0-UI.s1 /CLONE=UI-R-BT0-qh-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.21066.1 /TIER=ConsEnd /STK=2 /UG=Rn.21066 /UG_TITLE=ESTs AI146135 1381626_at BE105470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105470 /DB_XREF=gi:8497572 /DB_XREF=UI-R-BX0-arv-b-06-0-UI.s1 /CLONE=UI-R-BX0-arv-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.43173.1 /TIER=ConsEnd /STK=2 /UG=Rn.43173 /UG_TITLE=ESTs BE105470 1381627_at AW529790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529790 /DB_XREF=gi:7172204 /DB_XREF=UI-R-BU0-amt-c-12-0-UI.s1 /CLONE=UI-R-BU0-amt-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.46975.1 /TIER=ConsEnd /STK=2 /UG=Rn.46975 /UG_TITLE=ESTs AW529790 syntaphilin Snph 296267 NM_001106525 0007420 // brain development // inferred from expression pattern /// 0030182 // neuron differentiation // inferred from expression pattern 0005739 // mitochondrion // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 1381628_at AW534812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534812 /DB_XREF=gi:7177226 /DB_XREF=UI-R-BS0-anw-f-03-0-UI.s1 /CLONE=UI-R-BS0-anw-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.48390.1 /TIER=ConsEnd /STK=2 /UG=Rn.48390 /UG_TITLE=ESTs AW534812 1381629_at AI575874 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575874 /DB_XREF=gi:4560250 /DB_XREF=UI-R-G0-ut-b-04-0-UI.s1 /CLONE=UI-R-G0-ut-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.48931.1 /TIER=ConsEnd /STK=2 /UG=Rn.48931 /UG_TITLE=ESTs AI575874 G protein-coupled receptor 137 Gpr137 689984 NM_001109562 0004872 // receptor activity // inferred from electronic annotation 1381630_at BE102619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102619 /DB_XREF=gi:8494718 /DB_XREF=UI-R-BT1-aqs-b-03-0-UI.s1 /CLONE=UI-R-BT1-aqs-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.57377.1 /TIER=ConsEnd /STK=2 /UG=Rn.57377 /UG_TITLE=ESTs BE102619 similar to RIKEN cDNA A930018P22 RGD1563222 362175 NM_001108585 1381631_at BF394093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394093 /DB_XREF=gi:11378952 /DB_XREF=UI-R-CA0-bgz-a-04-0-UI.s1 /CLONE=UI-R-CA0-bgz-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.57470.1 /TIER=ConsEnd /STK=2 /UG=Rn.57470 /UG_TITLE=ESTs BF394093 1381632_at BF389481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389481 /DB_XREF=gi:11374316 /DB_XREF=UI-R-CJ0-bfc-c-07-0-UI.s1 /CLONE=UI-R-CJ0-bfc-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.58448.1 /TIER=ConsEnd /STK=2 /UG=Rn.58448 /UG_TITLE=ESTs BF389481 1381633_at BE116563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116563 /DB_XREF=gi:8508668 /DB_XREF=UI-R-BS1-ayj-f-11-0-UI.s1 /CLONE=UI-R-BS1-ayj-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.60969.1 /TIER=ConsEnd /STK=2 /UG=Rn.60969 /UG_TITLE=ESTs BE116563 1381634_at BF386493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386493 /DB_XREF=gi:11371358 /DB_XREF=UI-R-CA1-bbe-f-03-0-UI.s1 /CLONE=UI-R-CA1-bbe-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.61876.1 /TIER=ConsEnd /STK=2 /UG=Rn.61876 /UG_TITLE=ESTs BF386493 1381635_at BF404357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404357 /DB_XREF=gi:11392332 /DB_XREF=UI-R-CA1-bie-b-09-0-UI.s1 /CLONE=UI-R-CA1-bie-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.62061.1 /TIER=ConsEnd /STK=2 /UG=Rn.62061 /UG_TITLE=ESTs BF404357 1381636_at BF396481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396481 /DB_XREF=gi:11381455 /DB_XREF=UI-R-BS2-bdy-f-08-0-UI.s1 /CLONE=UI-R-BS2-bdy-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.64254.1 /TIER=ConsEnd /STK=2 /UG=Rn.64254 /UG_TITLE=ESTs BF396481 1381637_at BE107291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107291 /DB_XREF=gi:8499396 /DB_XREF=UI-R-BS1-ays-a-12-0-UI.s1 /CLONE=UI-R-BS1-ays-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.65807.1 /TIER=ConsEnd /STK=2 /UG=Rn.65807 /UG_TITLE=ESTs, Moderately similar to CALCIUMCALMODULIN-DEPENDENT PROTEIN KINASE TYPE II ALPHA CHAIN (R.norvegicus) BE107291 Calcium/calmodulin-dependent protein kinase II alpha Camk2a 25400 NM_012920 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from direct assay /// 0046777 // protein autophosphorylation // not recorded /// 0046928 // regulation of neurotransmitter secretion // not recorded /// 0048168 // regulation of neuronal synaptic plasticity // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005954 // calcium- and calmodulin-dependent protein kinase complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0030666 // endocytic vesicle membrane // not recorded /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from direct assay /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0035254 // glutamate receptor binding // not recorded 1381638_at BM386607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386607 /DB_XREF=gi:18186660 /DB_XREF=UI-R-CN1-cjg-b-01-0-UI.s1 /CLONE=UI-R-CN1-cjg-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.71731.1 /TIER=ConsEnd /STK=2 /UG=Rn.71731 /UG_TITLE=ESTs BM386607 1381639_at BF388694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388694 /DB_XREF=gi:11373518 /DB_XREF=UI-R-BS2-bdb-e-02-0-UI.s1 /CLONE=UI-R-BS2-bdb-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.29183.1 /TIER=ConsEnd /STK=2 /UG=Rn.29183 /UG_TITLE=ESTs BF388694 1381640_at BM389537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389537 /DB_XREF=gi:18189585 /DB_XREF=UI-R-CN1-cjn-d-10-0-UI.s1 /CLONE=UI-R-CN1-cjn-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.43604.1 /TIER=ConsEnd /STK=2 /UG=Rn.43604 /UG_TITLE=ESTs BM389537 1381641_at BE097328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097328 /DB_XREF=gi:8488259 /DB_XREF=UI-R-BO1-apq-b-01-0-UI.s1 /CLONE=UI-R-BO1-apq-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.44744.2 /TIER=ConsEnd /STK=2 /UG=Rn.44744 /UG_TITLE=ESTs BE097328 Breast carcinoma amplified sequence 3 Bcas3 363662 NM_001173430 /// XM_001081081 /// XM_343952 1381642_at AW533436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533436 /DB_XREF=gi:7175850 /DB_XREF=UI-R-BU0-anb-h-06-0-UI.s1 /CLONE=UI-R-BU0-anb-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.45405.1 /TIER=ConsEnd /STK=2 /UG=Rn.45405 /UG_TITLE=ESTs AW533436 1381643_at AW536050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW536050 /DB_XREF=gi:7178464 /DB_XREF=UI-R-BS0-aog-h-12-0-UI.s1 /CLONE=UI-R-BS0-aog-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.48600.1 /TIER=ConsEnd /STK=2 /UG=Rn.48600 /UG_TITLE=ESTs AW536050 1381644_at BE121056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121056 /DB_XREF=gi:8513161 /DB_XREF=UI-R-CA0-bar-e-12-0-UI.s1 /CLONE=UI-R-CA0-bar-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.49327.1 /TIER=ConsEnd /STK=2 /UG=Rn.49327 /UG_TITLE=ESTs BE121056 1381645_at BE097207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097207 /DB_XREF=gi:8488138 /DB_XREF=UI-R-BO1-apu-e-05-0-UI.s1 /CLONE=UI-R-BO1-apu-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.49561.1 /TIER=ConsEnd /STK=2 /UG=Rn.49561 /UG_TITLE=ESTs BE097207 tudor and KH domain containing Tdrkh 310652 NM_001014038 /// XM_001053329 /// XM_227438 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003723 // RNA binding // inferred from electronic annotation 1381646_at BE101561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101561 /DB_XREF=gi:8493659 /DB_XREF=UI-R-BO1-apr-d-05-0-UI.s1 /CLONE=UI-R-BO1-apr-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.50078.1 /TIER=ConsEnd /STK=2 /UG=Rn.50078 /UG_TITLE=ESTs BE101561 1381647_at BE103183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103183 /DB_XREF=gi:8495247 /DB_XREF=UI-R-BT1-aqx-b-05-0-UI.s1 /CLONE=UI-R-BT1-aqx-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.50477.1 /TIER=ConsEnd /STK=2 /UG=Rn.50477 /UG_TITLE=ESTs BE103183 1381648_at BF397798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397798 /DB_XREF=gi:11382782 /DB_XREF=UI-R-BS2-bee-g-06-0-UI.s1 /CLONE=UI-R-BS2-bee-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.51712.1 /TIER=ConsEnd /STK=2 /UG=Rn.51712 /UG_TITLE=ESTs BF397798 DNA replication helicase 2 homolog (yeast) Dna2 309762 XM_002725830 /// XM_241671 0006260 // DNA replication // inferred from electronic annotation /// 0006264 // mitochondrial DNA replication // not recorded /// 0006284 // base-excision repair // not recorded /// 0043137 // DNA replication, removal of RNA primer // not recorded /// 0045740 // positive regulation of DNA replication // not recorded 0005654 // nucleoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005760 // gamma DNA polymerase complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016890 // site-specific endodeoxyribonuclease activity, specific for altered base // not recorded /// 0017108 // 5'-flap endonuclease activity // not recorded 1381649_at BF416909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416909 /DB_XREF=gi:11404898 /DB_XREF=UI-R-CN0-bla-d-12-0-UI.s1 /CLONE=UI-R-CN0-bla-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.52527.1 /TIER=ConsEnd /STK=2 /UG=Rn.52527 /UG_TITLE=ESTs BF416909 1381650_at BM389433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389433 /DB_XREF=gi:18189486 /DB_XREF=UI-R-CN1-cjn-b-03-0-UI.s1 /CLONE=UI-R-CN1-cjn-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.56933.1 /TIER=ConsEnd /STK=2 /UG=Rn.56933 /UG_TITLE=ESTs BM389433 Selenophosphate synthetase 1 Sephs1 291314 NM_001104630 0003824 // catalytic activity // inferred from electronic annotation /// 0004756 // selenide, water dikinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1381651_at BE100638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100638 /DB_XREF=gi:8492535 /DB_XREF=UI-R-BJ1-auk-f-11-0-UI.s1 /CLONE=UI-R-BJ1-auk-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.57116.1 /TIER=ConsEnd /STK=2 /UG=Rn.57116 /UG_TITLE=ESTs BE100638 1381652_at BF396587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396587 /DB_XREF=gi:11381562 /DB_XREF=UI-R-BS2-bdz-h-03-0-UI.s1 /CLONE=UI-R-BS2-bdz-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.58635.1 /TIER=ConsEnd /STK=2 /UG=Rn.58635 /UG_TITLE=ESTs BF396587 Ankyrin repeat domain 52 Ankrd52 362811 NM_001191875 /// XM_001070685 /// XM_343139 0005515 // protein binding // not recorded 1381653_at BF386457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386457 /DB_XREF=gi:11371281 /DB_XREF=UI-R-CA1-bbd-g-02-0-UI.s1 /CLONE=UI-R-CA1-bbd-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.58759.1 /TIER=ConsEnd /STK=2 /UG=Rn.58759 /UG_TITLE=ESTs BF386457 1381654_at BF398637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398637 /DB_XREF=gi:11383634 /DB_XREF=UI-R-BS2-ber-b-04-0-UI.s1 /CLONE=UI-R-BS2-ber-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.59129.1 /TIER=ConsEnd /STK=2 /UG=Rn.59129 /UG_TITLE=ESTs BF398637 1381655_at BE102083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102083 /DB_XREF=gi:8494182 /DB_XREF=UI-R-BT1-aqj-b-08-0-UI.s1 /CLONE=UI-R-BT1-aqj-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.59325.1 /TIER=ConsEnd /STK=2 /UG=Rn.59325 /UG_TITLE=ESTs BE102083 1381656_at BF401772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401772 /DB_XREF=gi:11389747 /DB_XREF=UI-R-CA0-bgo-e-06-0-UI.s1 /CLONE=UI-R-CA0-bgo-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.59875.1 /TIER=ConsEnd /STK=2 /UG=Rn.59875 /UG_TITLE=ESTs BF401772 1381657_at BF403903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403903 /DB_XREF=gi:11391878 /DB_XREF=UI-R-CA1-bjd-d-21-0-UI.s1 /CLONE=UI-R-CA1-bjd-d-21-0-UI /FEA=EST /CNT=2 /TID=Rn.59885.1 /TIER=ConsEnd /STK=2 /UG=Rn.59885 /UG_TITLE=ESTs BF403903 1381658_at BF405906 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405906 /DB_XREF=gi:11393881 /DB_XREF=UI-R-CA1-bii-d-09-0-UI.s1 /CLONE=UI-R-CA1-bii-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.60177.1 /TIER=ConsEnd /STK=2 /UG=Rn.60177 /UG_TITLE=ESTs BF405906 1381659_at BE110516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110516 /DB_XREF=gi:8502621 /DB_XREF=UI-R-BJ1-auo-h-09-0-UI.s1 /CLONE=UI-R-BJ1-auo-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.61087.1 /TIER=ConsEnd /STK=2 /UG=Rn.61087 /UG_TITLE=ESTs BE110516 similar to BC040823 protein RGD1563798 499950 XM_002726307 1381660_at BF408426 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408426 /DB_XREF=gi:11396401 /DB_XREF=UI-R-BJ2-brc-f-02-0-UI.s1 /CLONE=UI-R-BJ2-brc-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.61143.1 /TIER=ConsEnd /STK=2 /UG=Rn.61143 /UG_TITLE=ESTs BF408426 1381661_at BF394303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394303 /DB_XREF=gi:11379167 /DB_XREF=UI-R-CA0-bgr-d-03-0-UI.s1 /CLONE=UI-R-CA0-bgr-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.61309.1 /TIER=ConsEnd /STK=2 /UG=Rn.61309 /UG_TITLE=ESTs BF394303 1381662_at BF409847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409847 /DB_XREF=gi:11397822 /DB_XREF=UI-R-CA1-bjr-e-03-0-UI.s1 /CLONE=UI-R-CA1-bjr-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.61503.1 /TIER=ConsEnd /STK=2 /UG=Rn.61503 /UG_TITLE=ESTs BF409847 1381663_at BF410329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410329 /DB_XREF=gi:11398304 /DB_XREF=UI-R-CA1-bjw-b-12-0-UI.s1 /CLONE=UI-R-CA1-bjw-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.61664.1 /TIER=ConsEnd /STK=2 /UG=Rn.61664 /UG_TITLE=ESTs BF410329 1381664_at BF403849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403849 /DB_XREF=gi:11391824 /DB_XREF=UI-R-CA1-bix-j-19-0-UI.s1 /CLONE=UI-R-CA1-bix-j-19-0-UI /FEA=EST /CNT=2 /TID=Rn.61717.1 /TIER=ConsEnd /STK=2 /UG=Rn.61717 /UG_TITLE=ESTs BF403849 1381665_at BF410498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410498 /DB_XREF=gi:11398473 /DB_XREF=UI-R-CA0-bme-d-03-0-UI.s1 /CLONE=UI-R-CA0-bme-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.61725.1 /TIER=ConsEnd /STK=2 /UG=Rn.61725 /UG_TITLE=ESTs BF410498 1381666_at BF411434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411434 /DB_XREF=gi:11399416 /DB_XREF=UI-R-CN0-bmk-c-11-0-UI.s1 /CLONE=UI-R-CN0-bmk-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.61840.1 /TIER=ConsEnd /STK=2 /UG=Rn.61840 /UG_TITLE=ESTs BF411434 1381667_at AW530329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530329 /DB_XREF=gi:7172743 /DB_XREF=UI-R-BU0-amv-c-11-0-UI.s1 /CLONE=UI-R-BU0-amv-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.62059.1 /TIER=ConsEnd /STK=2 /UG=Rn.62059 /UG_TITLE=ESTs AW530329 1381668_at AW528482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528482 /DB_XREF=gi:7170896 /DB_XREF=UI-R-BO1-ajl-h-05-0-UI.s1 /CLONE=UI-R-BO1-ajl-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.62072.1 /TIER=ConsEnd /STK=2 /UG=Rn.62072 /UG_TITLE=ESTs AW528482 1381669_at BE106220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106220 /DB_XREF=gi:8498322 /DB_XREF=UI-R-BO1-asl-d-05-0-UI.s1 /CLONE=UI-R-BO1-asl-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.62137.1 /TIER=ConsEnd /STK=2 /UG=Rn.62137 /UG_TITLE=ESTs BE106220 1381670_at BF412681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412681 /DB_XREF=gi:11400670 /DB_XREF=UI-R-BT1-bnq-h-04-0-UI.s1 /CLONE=UI-R-BT1-bnq-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.62139.1 /TIER=ConsEnd /STK=2 /UG=Rn.62139 /UG_TITLE=ESTs BF412681 1381671_at BF412750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412750 /DB_XREF=gi:11400739 /DB_XREF=UI-R-BT1-bnt-h-04-0-UI.s1 /CLONE=UI-R-BT1-bnt-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.62159.1 /TIER=ConsEnd /STK=2 /UG=Rn.62159 /UG_TITLE=ESTs BF412750 succinate-CoA ligase, ADP-forming, beta subunit Sucla2 361071 NM_001108387 0006099 // tricarboxylic acid cycle // inferred from direct assay /// 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006104 // succinyl-CoA metabolic process // inferred from direct assay /// 0006105 // succinate metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004775 // succinate-CoA ligase (ADP-forming) activity // inferred from direct assay /// 0004775 // succinate-CoA ligase (ADP-forming) activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1381672_at BE097787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097787 /DB_XREF=gi:8488718 /DB_XREF=UI-R-BO1-aqb-g-02-0-UI.s1 /CLONE=UI-R-BO1-aqb-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.62309.1 /TIER=ConsEnd /STK=2 /UG=Rn.62309 /UG_TITLE=ESTs BE097787 low density lipoprotein receptor adaptor protein 1 Ldlrap1 500564 NM_001109271 0042632 // cholesterol homeostasis // not recorded /// 0043393 // regulation of protein binding // not recorded /// 0048260 // positive regulation of receptor-mediated endocytosis // not recorded /// 0090118 // receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport // not recorded 0005769 // early endosome // not recorded /// 0005829 // cytosol // not recorded /// 0009925 // basal plasma membrane // not recorded /// 0030121 // AP-1 adaptor complex // not recorded /// 0030122 // AP-2 adaptor complex // not recorded 0001784 // phosphotyrosine binding // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0030159 // receptor signaling complex scaffold activity // not recorded /// 0030276 // clathrin binding // not recorded 1381673_at BF413443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413443 /DB_XREF=gi:11401432 /DB_XREF=UI-R-BT1-bob-b-12-0-UI.s1 /CLONE=UI-R-BT1-bob-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.62344.1 /TIER=ConsEnd /STK=2 /UG=Rn.62344 /UG_TITLE=ESTs BF413443 1381674_at BF399526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399526 /DB_XREF=gi:11384534 /DB_XREF=UI-R-CA1-bjb-j-08-0-UI.s1 /CLONE=UI-R-CA1-bjb-j-08-0-UI /FEA=EST /CNT=2 /TID=Rn.62450.1 /TIER=ConsEnd /STK=2 /UG=Rn.62450 /UG_TITLE=ESTs BF399526 1381675_at BF414198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414198 /DB_XREF=gi:11402187 /DB_XREF=UI-R-BJ2-bon-e-11-0-UI.s1 /CLONE=UI-R-BJ2-bon-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.62512.1 /TIER=ConsEnd /STK=2 /UG=Rn.62512 /UG_TITLE=ESTs, Weakly similar to T08680 hypothetical protein DKFZp564P0622.1 (H.sapiens) BF414198 F-box and leucine-rich repeat protein 7 Fbxl7 361907 NM_001108545 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1381676_at BF416388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416388 /DB_XREF=gi:11404377 /DB_XREF=UI-R-CA0-bks-a-07-0-UI.s1 /CLONE=UI-R-CA0-bks-a-07-0-UI /FEA=EST /CNT=2 /TID=Rn.63005.1 /TIER=ConsEnd /STK=2 /UG=Rn.63005 /UG_TITLE=ESTs, Highly similar to C48218 neurexin III-alpha membrane-bound type 4 precursor - rat (R.norvegicus) BF416388 neurexin 3 Nrxn3 116508 NM_053817 0007155 // cell adhesion // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0007416 // synapse assembly // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005246 // calcium channel regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1381677_at BF403882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403882 /DB_XREF=gi:11391857 /DB_XREF=UI-R-CA1-bix-p-15-0-UI.s1 /CLONE=UI-R-CA1-bix-p-15-0-UI /FEA=EST /CNT=2 /TID=Rn.63590.1 /TIER=ConsEnd /STK=2 /UG=Rn.63590 /UG_TITLE=ESTs, Moderately similar to HUD RAT PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD HOMOLOG (R.norvegicus) BF403882 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) Elavl2 286973 NM_173309 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1381678_at AW525560 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525560 /DB_XREF=gi:7167945 /DB_XREF=UI-R-BJ0p-ain-a-11-0-UI.s1 /CLONE=UI-R-BJ0p-ain-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.64118.1 /TIER=ConsEnd /STK=2 /UG=Rn.64118 /UG_TITLE=ESTs, Highly similar to FASCIN (M.musculus) AW525560 similar to Fascin (Singed-like protein) LOC683788 683788 NM_001100806 0001889 // liver development // inferred from expression pattern /// 0071460 // cellular response to cell-matrix adhesion // inferred from expression pattern 0001725 // stress fiber // inferred from direct assay /// 0001726 // ruffle // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005902 // microvillus // inferred from direct assay /// 0030027 // lamellipodium // inferred from direct assay /// 0030175 // filopodium // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay 0003779 // actin binding // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0030674 // protein binding, bridging // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from electronic annotation 1381679_at BF414324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414324 /DB_XREF=gi:11402354 /DB_XREF=UI-R-BJ2-bop-e-11-0-UI.s1 /CLONE=UI-R-BJ2-bop-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.64152.1 /TIER=ConsEnd /STK=2 /UG=Rn.64152 /UG_TITLE=ESTs BF414324 1381680_at BF412155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412155 /DB_XREF=gi:11400144 /DB_XREF=UI-R-BT1-bmu-e-05-0-UI.s1 /CLONE=UI-R-BT1-bmu-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.64186.1 /TIER=ConsEnd /STK=2 /UG=Rn.64186 /UG_TITLE=ESTs BF412155 1381681_at BE110205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110205 /DB_XREF=gi:8502310 /DB_XREF=UI-R-CA0-axk-c-10-0-UI.s1 /CLONE=UI-R-CA0-axk-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.66589.1 /TIER=ConsEnd /STK=2 /UG=Rn.66589 /UG_TITLE=ESTs BE110205 1381682_at BE106750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106750 /DB_XREF=gi:8498852 /DB_XREF=UI-R-BO1-asr-g-03-0-UI.s1 /CLONE=UI-R-BO1-asr-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.74841.1 /TIER=ConsEnd /STK=2 /UG=Rn.74841 /UG_TITLE=ESTs BE106750 1381683_at BE118824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118824 /DB_XREF=gi:8510929 /DB_XREF=UI-R-BS1-azv-b-10-0-UI.s1 /CLONE=UI-R-BS1-azv-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.75147.1 /TIER=ConsEnd /STK=2 /UG=Rn.75147 /UG_TITLE=ESTs, Highly similar to CHD2_HUMAN CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 2 (H.sapiens) BE118824 chromodomain helicase DNA binding protein 2 Chd2 308738 NM_001107523 0006333 // chromatin assembly or disassembly // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1381684_at BM391296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391296 /DB_XREF=gi:18191349 /DB_XREF=UI-R-DY0-ckq-h-09-0-UI.s1 /CLONE=UI-R-DY0-ckq-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.75351.1 /TIER=ConsEnd /STK=2 /UG=Rn.75351 /UG_TITLE=ESTs BM391296 1381685_a_at BI276419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276419 /DB_XREF=gi:14921295 /DB_XREF=UI-R-CX0-bwq-a-07-0-UI.s1 /CLONE=UI-R-CX0-bwq-a-07-0-UI /FEA=EST /CNT=5 /TID=Rn.12453.2 /TIER=ConsEnd /STK=0 /UG=Rn.12453 /UG_TITLE=ESTs BI276419 C-type lectin domain family 16, member A Clec16a 287044 XM_002724483 /// XM_213209 1381686_at BI276419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276419 /DB_XREF=gi:14921295 /DB_XREF=UI-R-CX0-bwq-a-07-0-UI.s1 /CLONE=UI-R-CX0-bwq-a-07-0-UI /FEA=EST /CNT=5 /TID=Rn.12453.2 /TIER=ConsEnd /STK=0 /UG=Rn.12453 /UG_TITLE=ESTs BI276419 C-type lectin domain family 16, member A Clec16a 287044 XM_002724483 /// XM_213209 1381687_at BE109434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109434 /DB_XREF=gi:8501579 /DB_XREF=UI-R-BJ1-aut-e-12-0-UI.s1 /CLONE=UI-R-BJ1-aut-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.20203.1 /TIER=ConsEnd /STK=2 /UG=Rn.20203 /UG_TITLE=ESTs BE109434 1381688_a_at BF415390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415390 /DB_XREF=gi:11403379 /DB_XREF=UI-R-BJ2-box-d-03-0-UI.s1 /CLONE=UI-R-BJ2-box-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.24804.1 /TIER=ConsEnd /STK=2 /UG=Rn.24804 /UG_TITLE=ESTs BF415390 1381689_at BF404369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404369 /DB_XREF=gi:11392344 /DB_XREF=UI-R-CA1-bie-d-01-0-UI.s1 /CLONE=UI-R-CA1-bie-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.28762.1 /TIER=ConsEnd /STK=2 /UG=Rn.28762 /UG_TITLE=ESTs BF404369 1381690_at BF409378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409378 /DB_XREF=gi:11397394 /DB_XREF=UI-R-CA1-blf-g-12-0-UI.s1 /CLONE=UI-R-CA1-blf-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.37590.1 /TIER=ConsEnd /STK=2 /UG=Rn.37590 /UG_TITLE=ESTs, Highly similar to T42714 ankyrin 3, splice form 2 - mouse (M.musculus) BF409378 ankyrin 3, epithelial Ank3 361833 NM_001033984 /// NM_031805 0007165 // signal transduction // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // non-traceable author statement /// 0045184 // establishment of protein localization // not recorded /// 0045184 // establishment of protein localization // inferred from electronic annotation /// 0050808 // synapse organization // not recorded /// 0050808 // synapse organization // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0045202 // synapse // inferred from electronic annotation 0005200 // structural constituent of cytoskeleton // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0019899 // enzyme binding // non-traceable author statement 1381691_at AW528026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528026 /DB_XREF=gi:7170440 /DB_XREF=UI-R-BT1-akg-h-01-0-UI.s1 /CLONE=UI-R-BT1-akg-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.40498.2 /TIER=ConsEnd /STK=2 /UG=Rn.40498 /UG_TITLE=ESTs, Weakly similar to SWISNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 (Mus musculus) (M.musculus) AW528026 Similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin c2 LOC685179 685179 XM_001055673 /// XM_001055738 /// XM_001055795 /// XM_002726856 /// XM_002729767 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006338 // chromatin remodeling // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0000785 // chromatin // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0016514 // SWI/SNF complex // not recorded /// 0017053 // transcriptional repressor complex // not recorded /// 0071564 // npBAF complex // not recorded /// 0071565 // nBAF complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1381692_x_at AW532977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532977 /DB_XREF=gi:7175391 /DB_XREF=UI-R-BU0-amy-d-03-0-UI.s1 /CLONE=UI-R-BU0-amy-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.44958.1 /TIER=ConsEnd /STK=2 /UG=Rn.44958 /UG_TITLE=ESTs AW532977 1381693_at AW526413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526413 /DB_XREF=gi:7168798 /DB_XREF=UI-R-BO1-ajb-g-11-0-UI.s1 /CLONE=UI-R-BO1-ajb-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.46187.1 /TIER=ConsEnd /STK=2 /UG=Rn.46187 /UG_TITLE=ESTs AW526413 1381694_at AW527264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527264 /DB_XREF=gi:7169678 /DB_XREF=UI-R-BO1-ajs-d-01-0-UI.s1 /CLONE=UI-R-BO1-ajs-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.46477.1 /TIER=ConsEnd /STK=2 /UG=Rn.46477 /UG_TITLE=ESTs AW527264 1381695_at AW527792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527792 /DB_XREF=gi:7170171 /DB_XREF=UI-R-BT1-ajy-g-11-0-UI.s1 /CLONE=UI-R-BT1-ajy-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.46650.1 /TIER=ConsEnd /STK=2 /UG=Rn.46650 /UG_TITLE=ESTs AW527792 1381696_at AW527867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527867 /DB_XREF=gi:7170281 /DB_XREF=UI-R-BT1-akb-a-12-0-UI.s1 /CLONE=UI-R-BT1-akb-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.46686.1 /TIER=ConsEnd /STK=2 /UG=Rn.46686 /UG_TITLE=ESTs AW527867 1381697_at AW530378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530378 /DB_XREF=gi:7172755 /DB_XREF=UI-R-BU0-amv-e-01-0-UI.s1 /CLONE=UI-R-BU0-amv-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.46984.1 /TIER=ConsEnd /STK=2 /UG=Rn.46984 /UG_TITLE=ESTs AW530378 1381698_at AA943098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943098 /DB_XREF=gi:3103014 /DB_XREF=EST198597 /CLONE=RBRAF07 /FEA=EST /CNT=2 /TID=Rn.47068.1 /TIER=ConsEnd /STK=2 /UG=Rn.47068 /UG_TITLE=ESTs, Highly similar to SOX-1 PROTEIN (M.musculus) AA943098 1381699_at BF389280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389280 /DB_XREF=gi:11374105 /DB_XREF=UI-R-BS2-bdi-h-07-0-UI.s1 /CLONE=UI-R-BS2-bdi-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.47588.1 /TIER=ConsEnd /STK=2 /UG=Rn.47588 /UG_TITLE=ESTs BF389280 1381700_at AW531577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531577 /DB_XREF=gi:7173991 /DB_XREF=UI-R-BT1-aku-e-11-0-UI.s1 /CLONE=UI-R-BT1-aku-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.47766.1 /TIER=ConsEnd /STK=2 /UG=Rn.47766 /UG_TITLE=ESTs AW531577 1381701_at AW433655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433655 /DB_XREF=gi:6964962 /DB_XREF=UI-R-BJ0p-afp-b-07-0-UI.s1 /CLONE=UI-R-BJ0p-afp-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.48614.2 /TIER=ConsEnd /STK=2 /UG=Rn.48614 /UG_TITLE=ESTs, Weakly similar to cyclin G-associated kinase (Rattus norvegicus) (R.norvegicus) AW433655 AP2 associated kinase 1 Aak1 500244 NM_001173450 /// XM_001070331 /// XM_575594 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005905 // coated pit // inferred from electronic annotation /// 0071439 // clathrin complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1381702_at AW525063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525063 /DB_XREF=gi:7167448 /DB_XREF=UI-R-BJ0p-aim-d-07-0-UI.s1 /CLONE=UI-R-BJ0p-aim-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.49069.1 /TIER=ConsEnd /STK=2 /UG=Rn.49069 /UG_TITLE=ESTs AW525063 SRY (sex determining region Y)-box 30 Sox30 689918 XM_001072526 /// XM_002724600 0031960 // response to corticosteroid stimulus // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003677 // DNA binding // inferred from electronic annotation 1381703_at AW525915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525915 /DB_XREF=gi:7168300 /DB_XREF=UI-R-BO1-aiw-c-03-0-UI.s1 /CLONE=UI-R-BO1-aiw-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.49074.1 /TIER=ConsEnd /STK=2 /UG=Rn.49074 /UG_TITLE=ESTs AW525915 1381704_s_at AW526310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526310 /DB_XREF=gi:7168695 /DB_XREF=UI-R-BO1-aja-e-08-0-UI.s1 /CLONE=UI-R-BO1-aja-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.49084.1 /TIER=ConsEnd /STK=2 /UG=Rn.49084 /UG_TITLE=ESTs, Highly similar to I56506 Na+Cl(-)-dependent neurotransmitter transporter, brain - rat (R.norvegicus) AW526310 solute carrier family 6 (neurotransmitter transporter), member 17 Slc6a17 613226 NM_001033079 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation 1381705_at BE110067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110067 /DB_XREF=gi:8502172 /DB_XREF=UI-R-CA0-axj-f-06-0-UI.s1 /CLONE=UI-R-CA0-axj-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.49094.1 /TIER=ConsEnd /STK=2 /UG=Rn.49094 /UG_TITLE=ESTs BE110067 1381706_at BE096841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096841 /DB_XREF=gi:8487772 /DB_XREF=UI-R-BO1-app-a-11-0-UI.s1 /CLONE=UI-R-BO1-app-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.49175.1 /TIER=ConsEnd /STK=2 /UG=Rn.49175 /UG_TITLE=ESTs BE096841 1381707_at BE097012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097012 /DB_XREF=gi:8487943 /DB_XREF=UI-R-BS0-aoh-g-06-0-UI.s1 /CLONE=UI-R-BS0-aoh-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.49509.1 /TIER=ConsEnd /STK=2 /UG=Rn.49509 /UG_TITLE=ESTs, Highly similar to PDBYB REP1 protein - yeast (Saccharomyces cerevisiae) (strain A364A D5) 2-mu plasmid (S.cerevisiae) BE097012 1381708_at BE097099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097099 /DB_XREF=gi:8488030 /DB_XREF=UI-R-BO1-apt-b-09-0-UI.s1 /CLONE=UI-R-BO1-apt-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.49535.1 /TIER=ConsEnd /STK=2 /UG=Rn.49535 /UG_TITLE=ESTs BE097099 Zinc finger, FYVE domain containing 1 Zfyve1 299188 NM_001106743 0005783 // endoplasmic reticulum // not recorded /// 0005795 // Golgi stack // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0005545 // phosphatidylinositol binding // not recorded /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1381709_at BE098754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098754 /DB_XREF=gi:8490623 /DB_XREF=UI-R-BJ1-atd-e-06-0-UI.s1 /CLONE=UI-R-BJ1-atd-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.49821.1 /TIER=ConsEnd /STK=2 /UG=Rn.49821 /UG_TITLE=ESTs, Weakly similar to G01950 hypothetical protein (H.sapiens) BE098754 1381710_at BE098789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098789 /DB_XREF=gi:8490658 /DB_XREF=UI-R-BJ1-atd-h-05-0-UI.s1 /CLONE=UI-R-BJ1-atd-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.49824.1 /TIER=ConsEnd /STK=2 /UG=Rn.49824 /UG_TITLE=ESTs, Weakly similar to ATR_MOUSE Antrax toxin receptor precursor (Tumor endothelial marker 8) (M.musculus) BE098789 1381711_at BE100967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100967 /DB_XREF=gi:8492870 /DB_XREF=UI-R-BJ1-aug-e-12-0-UI.s1 /CLONE=UI-R-BJ1-aug-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.50012.1 /TIER=ConsEnd /STK=2 /UG=Rn.50012 /UG_TITLE=ESTs, Highly similar to ML51_HUMAN MLN 51 PROTEIN (H.sapiens) BE100967 1381712_at BE102603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102603 /DB_XREF=gi:8494702 /DB_XREF=UI-R-BT1-aqo-h-09-0-UI.s1 /CLONE=UI-R-BT1-aqo-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.50349.1 /TIER=ConsEnd /STK=2 /UG=Rn.50349 /UG_TITLE=ESTs BE102603 1381713_at BE106279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106279 /DB_XREF=gi:8498381 /DB_XREF=UI-R-BO1-asm-b-04-0-UI.s1 /CLONE=UI-R-BO1-asm-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.50663.1 /TIER=ConsEnd /STK=2 /UG=Rn.50663 /UG_TITLE=ESTs BE106279 1381714_at BE105488 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105488 /DB_XREF=gi:8497590 /DB_XREF=UI-R-BX0-arv-d-01-0-UI.s1 /CLONE=UI-R-BX0-arv-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.50782.1 /TIER=ConsEnd /STK=2 /UG=Rn.50782 /UG_TITLE=ESTs BE105488 1381715_at BE107590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107590 /DB_XREF=gi:8499695 /DB_XREF=UI-R-CA0-awv-e-02-0-UI.s1 /CLONE=UI-R-CA0-awv-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.51217.1 /TIER=ConsEnd /STK=2 /UG=Rn.51217 /UG_TITLE=ESTs BE107590 1381716_at BE108564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108564 /DB_XREF=gi:8500669 /DB_XREF=UI-R-CA0-axf-g-03-0-UI.s1 /CLONE=UI-R-CA0-axf-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.51527.1 /TIER=ConsEnd /STK=2 /UG=Rn.51527 /UG_TITLE=ESTs BE108564 1381717_at AW529005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529005 /DB_XREF=gi:7171419 /DB_XREF=UI-R-BT1-aka-a-11-0-UI.s1 /CLONE=UI-R-BT1-aka-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.51709.1 /TIER=ConsEnd /STK=2 /UG=Rn.51709 /UG_TITLE=ESTs AW529005 1381718_at BE109530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109530 /DB_XREF=gi:8501635 /DB_XREF=UI-R-BJ1-avp-c-04-0-UI.s1 /CLONE=UI-R-BJ1-avp-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.51724.1 /TIER=ConsEnd /STK=2 /UG=Rn.51724 /UG_TITLE=ESTs BE109530 1381719_at BE115752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115752 /DB_XREF=gi:8507857 /DB_XREF=UI-R-CA0-axs-e-02-0-UI.s1 /CLONE=UI-R-CA0-axs-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.52560.1 /TIER=ConsEnd /STK=2 /UG=Rn.52560 /UG_TITLE=ESTs BE115752 1381720_at BE120510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120510 /DB_XREF=gi:8512615 /DB_XREF=UI-R-CA0-bat-c-10-0-UI.s1 /CLONE=UI-R-CA0-bat-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.52604.1 /TIER=ConsEnd /STK=2 /UG=Rn.52604 /UG_TITLE=ESTs BE120510 1381721_at BF388113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388113 /DB_XREF=gi:11372937 /DB_XREF=UI-R-CA1-bby-d-06-0-UI.s1 /CLONE=UI-R-CA1-bby-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.53735.1 /TIER=ConsEnd /STK=2 /UG=Rn.53735 /UG_TITLE=ESTs BF388113 1381722_at BE112898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112898 /DB_XREF=gi:8505003 /DB_XREF=UI-R-BJ1-awa-b-05-0-UI.s1 /CLONE=UI-R-BJ1-awa-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.54204.1 /TIER=ConsEnd /STK=2 /UG=Rn.54204 /UG_TITLE=ESTs, Weakly similar to TI47_HUMAN CARGO SELECTION PROTEIN TIP47 (H.sapiens) BE112898 perilipin 5 Plin5 501283 NM_001134637 1381723_at BF389527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389527 /DB_XREF=gi:11374362 /DB_XREF=UI-R-CJ0-bfc-g-07-0-UI.s1 /CLONE=UI-R-CJ0-bfc-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.56961.1 /TIER=ConsEnd /STK=2 /UG=Rn.56961 /UG_TITLE=ESTs BF389527 1381724_at BF392468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392468 /DB_XREF=gi:11377325 /DB_XREF=UI-R-CA0-bfj-e-12-0-UI.s1 /CLONE=UI-R-CA0-bfj-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.57633.1 /TIER=ConsEnd /STK=2 /UG=Rn.57633 /UG_TITLE=ESTs BF392468 1381725_at BF393429 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393429 /DB_XREF=gi:11378290 /DB_XREF=UI-R-CA0-bgc-h-01-0-UI.s1 /CLONE=UI-R-CA0-bgc-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.58058.1 /TIER=ConsEnd /STK=2 /UG=Rn.58058 /UG_TITLE=ESTs BF393429 1381726_at BF393430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393430 /DB_XREF=gi:11378291 /DB_XREF=UI-R-CA0-bgc-h-02-0-UI.s1 /CLONE=UI-R-CA0-bgc-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.58059.1 /TIER=ConsEnd /STK=2 /UG=Rn.58059 /UG_TITLE=ESTs BF393430 1381727_at BF405596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405596 /DB_XREF=gi:11393571 /DB_XREF=UI-R-CA1-bix-i-12-0-UI.s1 /CLONE=UI-R-CA1-bix-i-12-0-UI /FEA=EST /CNT=2 /TID=Rn.58098.1 /TIER=ConsEnd /STK=2 /UG=Rn.58098 /UG_TITLE=ESTs BF405596 1381728_at BF393880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393880 /DB_XREF=gi:11378743 /DB_XREF=UI-R-CA0-bgw-a-12-0-UI.s1 /CLONE=UI-R-CA0-bgw-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.58154.1 /TIER=ConsEnd /STK=2 /UG=Rn.58154 /UG_TITLE=ESTs, Weakly similar to S26689 hypothetical protein hc1 - mouse (M.musculus) BF393880 1381729_at BF394670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394670 /DB_XREF=gi:11379627 /DB_XREF=UI-R-CA0-bfy-e-01-0-UI.s1 /CLONE=UI-R-CA0-bfy-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.58322.1 /TIER=ConsEnd /STK=2 /UG=Rn.58322 /UG_TITLE=ESTs BF394670 hypothetical LOC498675 LOC498675 498675 NM_001109113 1381730_at BF394844 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394844 /DB_XREF=gi:11379802 /DB_XREF=UI-R-CA0-bfz-f-01-0-UI.s1 /CLONE=UI-R-CA0-bfz-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.58365.1 /TIER=ConsEnd /STK=2 /UG=Rn.58365 /UG_TITLE=ESTs, Weakly similar to E29149 proline-rich protein - mouse (M.musculus) BF394844 1381731_at BF399462 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399462 /DB_XREF=gi:11384470 /DB_XREF=UI-R-CA1-bjb-n-07-0-UI.s1 /CLONE=UI-R-CA1-bjb-n-07-0-UI /FEA=EST /CNT=2 /TID=Rn.58384.1 /TIER=ConsEnd /STK=2 /UG=Rn.58384 /UG_TITLE=ESTs BF399462 1381732_at BF398558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398558 /DB_XREF=gi:11383552 /DB_XREF=UI-R-BS2-beq-c-01-0-UI.s1 /CLONE=UI-R-BS2-beq-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.59115.1 /TIER=ConsEnd /STK=2 /UG=Rn.59115 /UG_TITLE=ESTs BF398558 1381733_at BF404543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404543 /DB_XREF=gi:11392483 /DB_XREF=UI-R-CA1-big-c-05-0-UI.s1 /CLONE=UI-R-CA1-big-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.59154.1 /TIER=ConsEnd /STK=2 /UG=Rn.59154 /UG_TITLE=ESTs BF404543 1381734_at BF400855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400855 /DB_XREF=gi:11388795 /DB_XREF=UI-R-CA0-bhg-a-10-0-UI.s1 /CLONE=UI-R-CA0-bhg-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.59652.1 /TIER=ConsEnd /STK=2 /UG=Rn.59652 /UG_TITLE=ESTs BF400855 similar to coiled-coil-helix-coiled-coil-helix domain containing 7 LOC684258 684258 XM_001069610 1381735_at BF387525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387525 /DB_XREF=gi:11372349 /DB_XREF=UI-R-CA1-bbn-d-05-0-UI.s1 /CLONE=UI-R-CA1-bbn-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.59975.1 /TIER=ConsEnd /STK=2 /UG=Rn.59975 /UG_TITLE=ESTs BF387525 1381736_at BF405604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405604 /DB_XREF=gi:11393579 /DB_XREF=UI-R-CA1-bix-k-06-0-UI.s1 /CLONE=UI-R-CA1-bix-k-06-0-UI /FEA=EST /CNT=2 /TID=Rn.60187.1 /TIER=ConsEnd /STK=2 /UG=Rn.60187 /UG_TITLE=ESTs BF405604 1381737_at BF404993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404993 /DB_XREF=gi:11392968 /DB_XREF=UI-R-CA1-bio-b-08-0-UI.s1 /CLONE=UI-R-CA1-bio-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.60636.1 /TIER=ConsEnd /STK=2 /UG=Rn.60636 /UG_TITLE=ESTs BF404993 1381738_at BF407796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407796 /DB_XREF=gi:11395771 /DB_XREF=UI-R-BJ2-brd-f-06-0-UI.s1 /CLONE=UI-R-BJ2-brd-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.61084.1 /TIER=ConsEnd /STK=2 /UG=Rn.61084 /UG_TITLE=ESTs BF407796 G protein-coupled receptor 135 Gpr135 314213 NM_181771 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1381739_at BF408779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408779 /DB_XREF=gi:11396754 /DB_XREF=UI-R-BT1-bne-c-02-0-UI.s1 /CLONE=UI-R-BT1-bne-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.61183.1 /TIER=ConsEnd /STK=2 /UG=Rn.61183 /UG_TITLE=ESTs BF408779 1381740_at BF409784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409784 /DB_XREF=gi:11397759 /DB_XREF=UI-R-CA1-bls-g-05-0-UI.s1 /CLONE=UI-R-CA1-bls-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.61482.1 /TIER=ConsEnd /STK=2 /UG=Rn.61482 /UG_TITLE=ESTs BF409784 1381741_at BF410324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410324 /DB_XREF=gi:11398299 /DB_XREF=UI-R-CA1-bjw-b-07-0-UI.s1 /CLONE=UI-R-CA1-bjw-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.61660.1 /TIER=ConsEnd /STK=2 /UG=Rn.61660 /UG_TITLE=ESTs BF410324 hypothetical LOC293498 RGD1306636 293498 XM_001078017 /// XM_002725664 /// XM_002728807 /// XM_215083 0018193 // peptidyl-amino acid modification // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation 0004597 // peptide-aspartate beta-dioxygenase activity // inferred from electronic annotation 1381742_at BF411770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411770 /DB_XREF=gi:11399759 /DB_XREF=UI-R-BT1-bmq-h-07-0-UI.s1 /CLONE=UI-R-BT1-bmq-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.61918.1 /TIER=ConsEnd /STK=2 /UG=Rn.61918 /UG_TITLE=ESTs BF411770 1381743_at BF412250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412250 /DB_XREF=gi:11400239 /DB_XREF=UI-R-BT1-bnb-b-04-0-UI.s1 /CLONE=UI-R-BT1-bnb-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.62036.1 /TIER=ConsEnd /STK=2 /UG=Rn.62036 /UG_TITLE=ESTs BF412250 1381744_at BF412904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412904 /DB_XREF=gi:11400893 /DB_XREF=UI-R-CA0-boc-b-07-0-UI.s1 /CLONE=UI-R-CA0-boc-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.62191.1 /TIER=ConsEnd /STK=2 /UG=Rn.62191 /UG_TITLE=ESTs BF412904 1381745_at BF413395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413395 /DB_XREF=gi:11401384 /DB_XREF=UI-R-CA0-boe-e-12-0-UI.s1 /CLONE=UI-R-CA0-boe-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.62328.1 /TIER=ConsEnd /STK=2 /UG=Rn.62328 /UG_TITLE=ESTs BF413395 1381746_at BF419533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419533 /DB_XREF=gi:11407522 /DB_XREF=UI-R-CA0-bpd-a-10-0-UI.s1 /CLONE=UI-R-CA0-bpd-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.63553.1 /TIER=ConsEnd /STK=2 /UG=Rn.63553 /UG_TITLE=ESTs BF419533 1381747_at BM385105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385105 /DB_XREF=gi:18185158 /DB_XREF=UI-R-CN1-cjm-b-06-0-UI.s2 /CLONE=UI-R-CN1-cjm-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.74665.1 /TIER=ConsEnd /STK=2 /UG=Rn.74665 /UG_TITLE=ESTs BM385105 1381748_at BM383697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383697 /DB_XREF=gi:18183750 /DB_XREF=UI-R-DM1-ckb-e-09-0-UI.s1 /CLONE=UI-R-DM1-ckb-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.81348.1 /TIER=ConsEnd /STK=2 /UG=Rn.81348 /UG_TITLE=ESTs, Weakly similar to F10E9.6a.p (Caenorhabditis elegans) (C.elegans) BM383697 0007165 // signal transduction // inferred from electronic annotation 1381749_at AI703743 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI703743 /DB_XREF=gi:4991643 /DB_XREF=UI-R-AB1-yx-f-07-0-UI.s1 /CLONE=UI-R-AB1-yx-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.40793.1 /TIER=ConsEnd /STK=2 /UG=Rn.40793 /UG_TITLE=ESTs, Weakly similar to S26689 hypothetical protein hc1 - mouse (M.musculus) AI703743 1381750_at AW251098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251098 /DB_XREF=gi:6594709 /DB_XREF=UI-R-BJ0-adi-c-11-0-UI.s1 /CLONE=UI-R-BJ0-adi-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.44697.1 /TIER=ConsEnd /STK=2 /UG=Rn.44697 /UG_TITLE=ESTs AW251098 1381751_at AI578290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578290 /DB_XREF=gi:4562666 /DB_XREF=UI-R-G0-ur-a-03-0-UI.s3 /CLONE=UI-R-G0-ur-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.60894.1 /TIER=ConsEnd /STK=2 /UG=Rn.60894 /UG_TITLE=ESTs AI578290 1381752_at BE106899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106899 /DB_XREF=gi:8499001 /DB_XREF=UI-R-BT1-asu-e-04-0-UI.s1 /CLONE=UI-R-BT1-asu-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.18533.1 /TIER=ConsEnd /STK=2 /UG=Rn.18533 /UG_TITLE=ESTs BE106899 1381753_at BF416214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416214 /DB_XREF=gi:11404203 /DB_XREF=UI-R-CA1-bki-g-10-0-UI.s1 /CLONE=UI-R-CA1-bki-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.53576.1 /TIER=ConsEnd /STK=2 /UG=Rn.53576 /UG_TITLE=ESTs BF416214 1381754_at BE116951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116951 /DB_XREF=gi:8509021 /DB_XREF=UI-R-BS1-azg-g-02-0-UI.s1 /CLONE=UI-R-BS1-azg-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.58112.1 /TIER=ConsEnd /STK=2 /UG=Rn.58112 /UG_TITLE=ESTs BE116951 1381755_x_at BI288309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288309 /DB_XREF=gi:14944769 /DB_XREF=UI-R-DK0-ccz-d-09-0-UI.s1 /CLONE=UI-R-DK0-ccz-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.72259.1 /TIER=ConsEnd /STK=2 /UG=Rn.72259 /UG_TITLE=ESTs, Weakly similar to synaptic nuclei expressed gene 2 (Homo sapiens) (H.sapiens) BI288309 similar to RIKEN cDNA 4831426I19 RGD1304563 299356 NM_001106762 0016021 // integral to membrane // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation 1381756_at BI294834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294834 /DB_XREF=gi:14957674 /DB_XREF=UI-R-DK0-cec-g-01-0-UI.s1 /CLONE=UI-R-DK0-cec-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.79633.1 /TIER=ConsEnd /STK=2 /UG=Rn.79633 /UG_TITLE=ESTs, Weakly similar to ADHA RAT ALCOHOL DEHYDROGENASE A CHAIN (R.norvegicus) BI294834 alcohol dehydrogenase 6A (class V) Adh6a 295498 NM_001106475 0006069 // ethanol oxidation // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0045471 // response to ethanol // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004022 // alcohol dehydrogenase (NAD) activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1381757_at AA965058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965058 /DB_XREF=gi:4279932 /DB_XREF=UI-R-C0-ha-h-01-0-UI.s1 /CLONE=UI-R-C0-ha-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.37606.1 /TIER=ConsEnd /STK=2 /UG=Rn.37606 /UG_TITLE=ESTs AA965058 hypothetical LOC305552 RGD1309501 305552 NM_001127537 1381758_at AI535566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535566 /DB_XREF=gi:4449701 /DB_XREF=UI-R-C3-ta-h-09-0-UI.s1 /CLONE=UI-R-C3-ta-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.34858.1 /TIER=ConsEnd /STK=2 /UG=Rn.34858 /UG_TITLE=ESTs AI535566 similar to MDM2 Binding protein RGD1565672 500870 NM_001130717 1381759_at AI555447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555447 /DB_XREF=gi:4487810 /DB_XREF=UI-R-C2p-qq-a-10-0-UI.s1 /CLONE=UI-R-C2p-qq-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.39276.1 /TIER=ConsEnd /STK=2 /UG=Rn.39276 /UG_TITLE=ESTs AI555447 RGD1565975 RGD1565975 291903 XM_001065138 /// XM_238038 1381760_at BF393440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393440 /DB_XREF=gi:11378301 /DB_XREF=UI-R-CA0-bfu-a-01-0-UI.s1 /CLONE=UI-R-CA0-bfu-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.58061.1 /TIER=ConsEnd /STK=2 /UG=Rn.58061 /UG_TITLE=ESTs BF393440 microtubule associated monoxygenase, calponin and LIM domain containing 3 Mical3 362427 NM_001191085 /// XM_001064549 /// XM_002726484 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1381761_at AI059890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059890 /DB_XREF=gi:3333667 /DB_XREF=UI-R-C1-la-e-12-0-UI.s1 /CLONE=UI-R-C1-la-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.22947.1 /TIER=ConsEnd /STK=2 /UG=Rn.22947 /UG_TITLE=ESTs AI059890 1381762_at AW526420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526420 /DB_XREF=gi:7168805 /DB_XREF=UI-R-BO1-ajb-h-06-0-UI.s1 /CLONE=UI-R-BO1-ajb-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.46190.1 /TIER=ConsEnd /STK=2 /UG=Rn.46190 /UG_TITLE=ESTs AW526420 1381763_at AI763775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763775 /DB_XREF=gi:5209710 /DB_XREF=UI-R-Y0-acn-h-05-0-UI.s1 /CLONE=UI-R-Y0-acn-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.48969.1 /TIER=ConsEnd /STK=2 /UG=Rn.48969 /UG_TITLE=ESTs AI763775 1381764_s_at AA819792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819792 /DB_XREF=gi:4228049 /DB_XREF=UI-R-A0-aq-f-02-0-UI.s1 /CLONE=UI-R-A0-aq-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.24361.1 /TIER=ConsEnd /STK=2 /UG=Rn.24361 /UG_TITLE=ESTs, Highly similar to R33683 3 (H.sapiens) AA819792 ring finger protein 126 Rnf126 314613 NM_001033702 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1381765_at AI137388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137388 /DB_XREF=gi:3638165 /DB_XREF=UI-R-C2p-og-g-03-0-UI.s1 /CLONE=UI-R-C2p-og-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.24925.1 /TIER=ConsEnd /STK=2 /UG=Rn.24925 /UG_TITLE=ESTs, Moderately similar to T43493 hypothetical protein DKFZp434C119.1 (H.sapiens) AI137388 Solute carrier family 25, member 39 Slc25a39 360636 NM_001024792 0006783 // heme biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1381766_at AI711035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711035 /DB_XREF=gi:5000811 /DB_XREF=UI-R-AE1-zi-c-12-0-UI.s1 /CLONE=UI-R-AE1-zi-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.44699.1 /TIER=ConsEnd /STK=2 /UG=Rn.44699 /UG_TITLE=ESTs AI711035 1381767_at AI044878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044878 /DB_XREF=gi:3291697 /DB_XREF=UI-R-C1-kd-g-09-0-UI.s1 /CLONE=UI-R-C1-kd-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.65965.1 /TIER=ConsEnd /STK=2 /UG=Rn.65965 /UG_TITLE=ESTs AI044878 1381768_at AW535082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535082 /DB_XREF=gi:7177496 /DB_XREF=UI-R-C4-als-a-06-0-UI.s1 /CLONE=UI-R-C4-als-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.41761.1 /TIER=ConsEnd /STK=2 /UG=Rn.41761 /UG_TITLE=ESTs, Highly similar to FTHC_MOUSE 5-formyltetrahydrofolate cyclo-ligase (5,10-methenyl-tetrahydrofolate synthetase) (Methenyl-THF synthetase) (MTHFS) (M.musculus) AW535082 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) Mthfs 300886 NM_001009349 0006915 // apoptosis // inferred by curator /// 0006916 // anti-apoptosis // non-traceable author statement /// 0009396 // folic acid and derivative biosynthetic process // inferred from electronic annotation /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0046653 // tetrahydrofolate metabolic process // not recorded 0005739 // mitochondrion // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // not recorded 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030272 // 5-formyltetrahydrofolate cyclo-ligase activity // inferred from electronic annotation /// 0030272 // 5-formyltetrahydrofolate cyclo-ligase activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0051400 // BH domain binding // inferred from physical interaction 1381769_at AW251554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251554 /DB_XREF=gi:6595145 /DB_XREF=UI-R-BJ0-ado-e-08-0-UI.s1 /CLONE=UI-R-BJ0-ado-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.42314.1 /TIER=ConsEnd /STK=2 /UG=Rn.42314 /UG_TITLE=ESTs AW251554 1381770_at AW527481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527481 /DB_XREF=gi:7169895 /DB_XREF=UI-R-BO1-ajt-g-11-0-UI.s1 /CLONE=UI-R-BO1-ajt-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.46547.1 /TIER=ConsEnd /STK=2 /UG=Rn.46547 /UG_TITLE=ESTs AW527481 1381771_at AI178422 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178422 /DB_XREF=gi:3729060 /DB_XREF=EST222095 /CLONE=RPLCQ71 /FEA=EST /CNT=2 /TID=Rn.46818.1 /TIER=ConsEnd /STK=2 /UG=Rn.46818 /UG_TITLE=ESTs, Weakly similar to KI01 RAT PROBABLE G PROTEIN-COUPLED RECEPTOR VTR 15-20 (R.norvegicus) AI178422 1381772_at BF415397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415397 /DB_XREF=gi:11403386 /DB_XREF=UI-R-BJ2-box-d-10-0-UI.s1 /CLONE=UI-R-BJ2-box-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.62682.1 /TIER=ConsEnd /STK=2 /UG=Rn.62682 /UG_TITLE=ESTs BF415397 Similar to Ab2-095 RGD1309079 315891 NM_001134472 1381773_at BM383335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383335 /DB_XREF=gi:18183388 /DB_XREF=UI-R-DM1-cka-a-05-0-UI.s1 /CLONE=UI-R-DM1-cka-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.64445.1 /TIER=ConsEnd /STK=2 /UG=Rn.64445 /UG_TITLE=ESTs BM383335 abhydrolase domain containing 3 Abhd3 291793 NM_001106162 0004091 // carboxylesterase activity // inferred from electronic annotation 1381774_at BE095849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095849 /DB_XREF=gi:8486780 /DB_XREF=UI-R-BU0-apb-c-07-0-UI.s1 /CLONE=UI-R-BU0-apb-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.26587.1 /TIER=ConsEnd /STK=2 /UG=Rn.26587 /UG_TITLE=ESTs BE095849 1381775_at BF391321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391321 /DB_XREF=gi:11376173 /DB_XREF=UI-R-CA1-bcr-a-05-0-UI.s1 /CLONE=UI-R-CA1-bcr-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.34703.1 /TIER=ConsEnd /STK=2 /UG=Rn.34703 /UG_TITLE=ESTs BF391321 1381776_at BI294972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294972 /DB_XREF=gi:14957950 /DB_XREF=UI-R-DK0-cee-c-08-0-UI.s1 /CLONE=UI-R-DK0-cee-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.19837.1 /TIER=ConsEnd /STK=2 /UG=Rn.19837 /UG_TITLE=ESTs BI294972 transmembrane emp24 protein transport domain containing 6 Tmed6 291991 NM_001106183 0006810 // transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1381777_at BE119680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119680 /DB_XREF=gi:8511785 /DB_XREF=UI-R-CA0-baz-f-11-0-UI.s1 /CLONE=UI-R-CA0-baz-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.48581.1 /TIER=ConsEnd /STK=2 /UG=Rn.48581 /UG_TITLE=ESTs BE119680 1381778_at BI273900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI273900 /DB_XREF=gi:14884314 /DB_XREF=UI-R-CW0-bwa-c-06-0-UI.s1 /CLONE=UI-R-CW0-bwa-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.52469.1 /TIER=ConsEnd /STK=2 /UG=Rn.52469 /UG_TITLE=ESTs BI273900 1381779_s_at BG380027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380027 /DB_XREF=gi:13304499 /DB_XREF=UI-R-CS0-btl-b-04-0-UI.s1 /CLONE=UI-R-CS0-btl-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.66712.1 /TIER=ConsEnd /STK=2 /UG=Rn.66712 /UG_TITLE=ESTs, Highly similar to MAN1 RAT ALPHA-MANNOSIDASE (R.norvegicus) BG380027 mannosidase, alpha, class 2C, member 1 Man2c1 246136 NM_139256 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006013 // mannose metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // non-traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004559 // alpha-mannosidase activity // inferred from direct assay /// 0004559 // alpha-mannosidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0015923 // mannosidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1381780_at AA900704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900704 /DB_XREF=gi:4233199 /DB_XREF=UI-R-E0-by-g-01-0-UI.s4 /CLONE=UI-R-E0-by-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.23135.1 /TIER=ConsEnd /STK=2 /UG=Rn.23135 /UG_TITLE=ESTs AA900704 1381781_at BF386770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386770 /DB_XREF=gi:11371594 /DB_XREF=UI-R-CA1-bbh-c-05-0-UI.s1 /CLONE=UI-R-CA1-bbh-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.59937.1 /TIER=ConsEnd /STK=2 /UG=Rn.59937 /UG_TITLE=ESTs BF386770 1381782_at BE110882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110882 /DB_XREF=gi:8502987 /DB_XREF=UI-R-BJ1-aux-a-12-0-UI.s1 /CLONE=UI-R-BJ1-aux-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.62660.1 /TIER=ConsEnd /STK=2 /UG=Rn.62660 /UG_TITLE=ESTs BE110882 Ubiquitin-conjugating enzyme E2Z Ube2z 303478 NM_001037643 0006915 // apoptosis // inferred from electronic annotation /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1381783_at AI577267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577267 /DB_XREF=gi:4561643 /DB_XREF=UI-R-AD0-wf-g-06-0-UI.s1 /CLONE=UI-R-AD0-wf-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.38091.1 /TIER=ConsEnd /STK=2 /UG=Rn.38091 /UG_TITLE=ESTs, Highly similar to AKA3_MOUSE A-kinase anchor protein 3 (Protein kinase A anchoring protein 3) (PRKA3) (A-kinase anchor protein 110 kDa) (AKAP 110) (M.musculus) AI577267 A kinase (PRKA) anchor protein 3 Akap3 312720 NM_001005557 0006928 // cellular component movement // inferred from electronic annotation /// 0006928 // cellular component movement // not recorded /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // inferred from electronic annotation /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // not recorded /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded 0009434 // microtubule-based flagellum // inferred from electronic annotation /// 0009434 // microtubule-based flagellum // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0051018 // protein kinase A binding // inferred from electronic annotation /// 0051018 // protein kinase A binding // not recorded 1381784_at BE099215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099215 /DB_XREF=gi:8491091 /DB_XREF=UI-R-BJ1-atz-f-08-0-UI.s1 /CLONE=UI-R-BJ1-atz-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.49141.1 /TIER=ConsEnd /STK=2 /UG=Rn.49141 /UG_TITLE=ESTs, Weakly similar to T48686 hypothetical protein DKFZp761D1823.1 (H.sapiens) BE099215 TBC1 domain family, member 9B Tbc1d9b 360520 NM_001108274 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1381785_at BE099306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099306 /DB_XREF=gi:8491182 /DB_XREF=UI-R-BJ1-aub-h-10-0-UI.s1 /CLONE=UI-R-BJ1-aub-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.49862.1 /TIER=ConsEnd /STK=2 /UG=Rn.49862 /UG_TITLE=ESTs BE099306 1381786_at BE114356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114356 /DB_XREF=gi:8506461 /DB_XREF=UI-R-CA0-axp-c-08-0-UI.s1 /CLONE=UI-R-CA0-axp-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.48081.1 /TIER=ConsEnd /STK=2 /UG=Rn.48081 /UG_TITLE=ESTs BE114356 1381787_at AI535411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535411 /DB_XREF=gi:4449546 /DB_XREF=UI-R-C3-si-f-11-0-UI.s1 /CLONE=UI-R-C3-si-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.52442.1 /TIER=ConsEnd /STK=2 /UG=Rn.52442 /UG_TITLE=ESTs, Highly similar to MYOSIN HEAVY CHAIN, CARDIAC MUSCLE BETA ISOFORM (R.norvegicus) AI535411 Neuroguidin, EIF4E binding protein Ngdn 305887 NM_001107263 1381788_at BE097748 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097748 /DB_XREF=gi:8488679 /DB_XREF=UI-R-BO1-aqb-c-09-0-UI.s1 /CLONE=UI-R-BO1-aqb-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.49684.1 /TIER=ConsEnd /STK=2 /UG=Rn.49684 /UG_TITLE=ESTs BE097748 1381789_at BM384022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384022 /DB_XREF=gi:18184075 /DB_XREF=UI-R-DM1-ckb-g-18-0-UI.s1 /CLONE=UI-R-DM1-ckb-g-18-0-UI /FEA=EST /CNT=2 /TID=Rn.27809.1 /TIER=ConsEnd /STK=2 /UG=Rn.27809 /UG_TITLE=ESTs, Weakly similar to LYC2 RAT LYSOZYME C, TYPE 2 PRECURSOR (R.norvegicus) BM384022 lysozyme-like 6 Lyzl6 287751 NM_001135833 0008152 // metabolic process // inferred from electronic annotation /// 0016998 // cell wall macromolecule catabolic process // inferred from electronic annotation 0003796 // lysozyme activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation 1381790_at BE117850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117850 /DB_XREF=gi:8509955 /DB_XREF=UI-R-BS1-azh-g-04-0-UI.s1 /CLONE=UI-R-BS1-azh-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.52909.1 /TIER=ConsEnd /STK=2 /UG=Rn.52909 /UG_TITLE=ESTs, Highly similar to T30989 serinethreonine protein kinase NIK - mouse (M.musculus) BE117850 mitogen-activated protein kinase kinase kinase kinase 4 Map4k4 301363 NM_001106904 0006468 // protein phosphorylation // inferred from electronic annotation 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1381791_at AA818889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818889 /DB_XREF=gi:4227561 /DB_XREF=UI-R-A0-av-c-09-0-UI.s1 /CLONE=UI-R-A0-av-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.16558.1 /TIER=ConsEnd /STK=2 /UG=Rn.16558 /UG_TITLE=ESTs AA818889 1381792_at BF411995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411995 /DB_XREF=gi:11399984 /DB_XREF=UI-R-BT1-bms-b-03-0-UI.s1 /CLONE=UI-R-BT1-bms-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.46236.1 /TIER=ConsEnd /STK=2 /UG=Rn.46236 /UG_TITLE=ESTs BF411995 mitochondrial ribosomal protein S15 Mrps15 298517 NM_001007653 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005763 // mitochondrial small ribosomal subunit // inferred from electronic annotation /// 0005763 // mitochondrial small ribosomal subunit // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1381793_at BE098864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098864 /DB_XREF=gi:8490735 /DB_XREF=UI-R-BJ1-ate-g-02-0-UI.s1 /CLONE=UI-R-BJ1-ate-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.49594.1 /TIER=ConsEnd /STK=2 /UG=Rn.49594 /UG_TITLE=ESTs BE098864 1381794_at AI716900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716900 /DB_XREF=gi:5034156 /DB_XREF=UI-R-Y0-aci-e-07-0-UI.s1 /CLONE=UI-R-Y0-aci-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.41211.1 /TIER=ConsEnd /STK=2 /UG=Rn.41211 /UG_TITLE=ESTs AI716900 Proteasome (prosome, macropain) 26S subunit, ATPase, 4 Psmc4 117262 NM_057122 0001824 // blastocyst development // inferred from electronic annotation /// 0001824 // blastocyst development // not recorded /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // traceable author statement /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1381795_at AA963295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963295 /DB_XREF=gi:4278219 /DB_XREF=UI-R-E1-gi-a-08-0-UI.s1 /CLONE=UI-R-E1-gi-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.11434.1 /TIER=ConsEnd /STK=2 /UG=Rn.11434 /UG_TITLE=ESTs AA963295 1381796_at AI454286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454286 /DB_XREF=gi:4292663 /DB_XREF=UI-R-E1-gl-h-09-0-UI.s1 /CLONE=UI-R-E1-gl-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.35003.1 /TIER=ConsEnd /STK=2 /UG=Rn.35003 /UG_TITLE=ESTs AI454286 1381797_at AW530275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530275 /DB_XREF=gi:7172689 /DB_XREF=UI-R-BU0-amu-f-12-0-UI.s1 /CLONE=UI-R-BU0-amu-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.40670.1 /TIER=ConsEnd /STK=2 /UG=Rn.40670 /UG_TITLE=ESTs AW530275 1381798_at BE114958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114958 /DB_XREF=gi:8507063 /DB_XREF=UI-R-BJ1-awr-e-07-0-UI.s1 /CLONE=UI-R-BJ1-awr-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.52445.1 /TIER=ConsEnd /STK=2 /UG=Rn.52445 /UG_TITLE=ESTs BE114958 LIM domain 7 Lmo7 361084 NM_001001515 0016337 // cell-cell adhesion // inferred from expression pattern 0005913 // cell-cell adherens junction // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042805 // actinin binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1381799_at BF387817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387817 /DB_XREF=gi:11372606 /DB_XREF=UI-R-CA1-bbu-f-06-0-UI.s1 /CLONE=UI-R-CA1-bbu-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.57956.1 /TIER=ConsEnd /STK=2 /UG=Rn.57956 /UG_TITLE=ESTs BF387817 similar to OTTHUMP00000046255 RGD1562037 498764 XM_001056659 /// XM_574050 1381800_at BM383272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383272 /DB_XREF=gi:18183325 /DB_XREF=UI-R-DS0-cje-i-18-0-UI.s1 /CLONE=UI-R-DS0-cje-i-18-0-UI /FEA=EST /CNT=2 /TID=Rn.81000.1 /TIER=ConsEnd /STK=2 /UG=Rn.81000 /UG_TITLE=ESTs BM383272 1381801_at AI717493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717493 /DB_XREF=gi:5034749 /DB_XREF=UI-R-Y0-acb-g-09-0-UI.s1 /CLONE=UI-R-Y0-acb-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.40775.1 /TIER=ConsEnd /STK=2 /UG=Rn.40775 /UG_TITLE=ESTs, Weakly similar to FASC MOUSE FASCIN (M.musculus) AI717493 fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus) Fscn2 303741 NM_001107072 0042462 // eye photoreceptor cell development // not recorded 0030674 // protein binding, bridging // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from electronic annotation 1381802_at BE121396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121396 /DB_XREF=gi:8513501 /DB_XREF=UI-R-CA0-bax-d-06-0-UI.s1 /CLONE=UI-R-CA0-bax-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.61952.1 /TIER=ConsEnd /STK=2 /UG=Rn.61952 /UG_TITLE=ESTs, Moderately similar to LEUKOSIALIN PRECURSOR (R.norvegicus) BE121396 Similar to Leukosialin precursor (Leucocyte sialoglycoprotein) RGD1560412 501808 XR_008972 /// XR_085989 1381803_at BE110472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110472 /DB_XREF=gi:8502577 /DB_XREF=UI-R-BJ1-auo-d-08-0-UI.s1 /CLONE=UI-R-BJ1-auo-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.69195.1 /TIER=ConsEnd /STK=2 /UG=Rn.69195 /UG_TITLE=ESTs BE110472 1381804_at BI293313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293313 /DB_XREF=gi:14954700 /DB_XREF=UI-R-DK0-cdn-e-07-0-UI.s1 /CLONE=UI-R-DK0-cdn-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.20865.1 /TIER=ConsEnd /STK=2 /UG=Rn.20865 /UG_TITLE=ESTs BI293313 B-cell CLL/lymphoma 6, member B (zinc finger protein) Bcl6b 360551 NM_001108279 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1381805_at AI555863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555863 /DB_XREF=gi:4488226 /DB_XREF=UI-R-C2p-qx-a-06-0-UI.s1 /CLONE=UI-R-C2p-qx-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.38728.1 /TIER=ConsEnd /STK=2 /UG=Rn.38728 /UG_TITLE=ESTs AI555863 1381806_at BF418208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418208 /DB_XREF=gi:11406197 /DB_XREF=UI-R-CN0-blt-h-04-0-UI.s1 /CLONE=UI-R-CN0-blt-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.63383.1 /TIER=ConsEnd /STK=2 /UG=Rn.63383 /UG_TITLE=ESTs, Highly similar to PROSTAGLANDIN GH SYNTHASE 1 PRECURSOR (R.norvegicus) BF418208 prostaglandin-endoperoxide synthase 1 Ptgs1 24693 NM_017043 0001516 // prostaglandin biosynthetic process // inferred from mutant phenotype /// 0001516 // prostaglandin biosynthetic process // not recorded /// 0001516 // prostaglandin biosynthetic process // inferred from sequence or structural similarity /// 0001516 // prostaglandin biosynthetic process // traceable author statement /// 0001516 // prostaglandin biosynthetic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006693 // prostaglandin metabolic process // not recorded /// 0006693 // prostaglandin metabolic process // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0008217 // regulation of blood pressure // not recorded /// 0008217 // regulation of blood pressure // inferred from sequence or structural similarity /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010700 // negative regulation of norepinephrine secretion // inferred from mutant phenotype /// 0019371 // cyclooxygenase pathway // inferred from electronic annotation /// 0019371 // cyclooxygenase pathway // not recorded /// 0032811 // negative regulation of epinephrine secretion // inferred from mutant phenotype /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype /// 0045987 // positive regulation of smooth muscle contraction // inferred from mutant phenotype /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005635 // nuclear envelope // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from sequence or structural similarity /// 0005792 // microsome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004601 // peroxidase activity // inferred from electronic annotation /// 0004666 // prostaglandin-endoperoxide synthase activity // not recorded /// 0004666 // prostaglandin-endoperoxide synthase activity // traceable author statement /// 0004666 // prostaglandin-endoperoxide synthase activity // inferred from electronic annotation /// 0008289 // lipid binding // inferred from mutant phenotype /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1381807_at BM383408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383408 /DB_XREF=gi:18183461 /DB_XREF=UI-R-DM1-ckb-d-12-0-UI.s1 /CLONE=UI-R-DM1-ckb-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.41599.1 /TIER=ConsEnd /STK=2 /UG=Rn.41599 /UG_TITLE=ESTs BM383408 1381808_at AI411255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411255 /DB_XREF=gi:4254759 /DB_XREF=EST239549 /CLONE=RKIEO21 /FEA=EST /CNT=2 /TID=Rn.43298.1 /TIER=ConsEnd /STK=2 /UG=Rn.43298 /UG_TITLE=ESTs AI411255 alanine-glyoxylate aminotransferase 2-like 2 Agxt2l2 100169747 NM_001128196 0005739 // mitochondrion // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1381809_at BE097847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097847 /DB_XREF=gi:8488778 /DB_XREF=UI-R-BO1-aqc-e-06-0-UI.s1 /CLONE=UI-R-BO1-aqc-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.49713.1 /TIER=ConsEnd /STK=2 /UG=Rn.49713 /UG_TITLE=ESTs BE097847 1381810_at BF408753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408753 /DB_XREF=gi:11396728 /DB_XREF=UI-R-BT1-bnf-h-03-0-UI.s1 /CLONE=UI-R-BT1-bnf-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.61174.1 /TIER=ConsEnd /STK=2 /UG=Rn.61174 /UG_TITLE=ESTs BF408753 1381811_at BM385405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385405 /DB_XREF=gi:18185458 /DB_XREF=UI-R-CN1-clv-l-21-0-UI.s1 /CLONE=UI-R-CN1-clv-l-21-0-UI /FEA=EST /CNT=2 /TID=Rn.12335.1 /TIER=ConsEnd /STK=2 /UG=Rn.12335 /UG_TITLE=ESTs BM385405 1381812_at BF416550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416550 /DB_XREF=gi:11404539 /DB_XREF=UI-R-CA1-bkt-a-02-0-UI.s1 /CLONE=UI-R-CA1-bkt-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.38021.1 /TIER=ConsEnd /STK=2 /UG=Rn.38021 /UG_TITLE=ESTs BF416550 1381813_at BI294535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294535 /DB_XREF=gi:14957081 /DB_XREF=UI-R-DK0-cel-d-03-0-UI.s1 /CLONE=UI-R-DK0-cel-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.70180.1 /TIER=ConsEnd /STK=2 /UG=Rn.70180 /UG_TITLE=ESTs BI294535 1381814_at AI044216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044216 /DB_XREF=gi:3291119 /DB_XREF=UI-R-C1-kb-b-09-0-UI.s2 /CLONE=UI-R-C1-kb-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.15837.1 /TIER=ConsEnd /STK=2 /UG=Rn.15837 /UG_TITLE=ESTs AI044216 1381815_at BE097058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097058 /DB_XREF=gi:8487989 /DB_XREF=UI-R-BO1-apw-e-10-0-UI.s1 /CLONE=UI-R-BO1-apw-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.49520.1 /TIER=ConsEnd /STK=2 /UG=Rn.49520 /UG_TITLE=ESTs, Moderately similar to ATRIAL NATRIURETIC PEPTIDE RECEPTOR B PRECURSOR (R.norvegicus) BE097058 1381816_at BE119617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119617 /DB_XREF=gi:8511722 /DB_XREF=UI-R-CA0-baz-a-04-0-UI.s1 /CLONE=UI-R-CA0-baz-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.57170.1 /TIER=ConsEnd /STK=2 /UG=Rn.57170 /UG_TITLE=ESTs BE119617 renalase, FAD-dependent amine oxidase Rnls 361751 NM_001014167 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation 1381817_at AI044318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044318 /DB_XREF=gi:3291221 /DB_XREF=UI-R-C1-jx-e-02-0-UI.s1 /CLONE=UI-R-C1-jx-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.36437.1 /TIER=ConsEnd /STK=2 /UG=Rn.36437 /UG_TITLE=ESTs AI044318 1381818_at BF409711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409711 /DB_XREF=gi:11397686 /DB_XREF=UI-R-CA1-bln-h-04-0-UI.s1 /CLONE=UI-R-CA1-bln-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.61456.1 /TIER=ConsEnd /STK=2 /UG=Rn.61456 /UG_TITLE=ESTs BF409711 1381819_at AI137052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137052 /DB_XREF=gi:3637829 /DB_XREF=UI-R-C2p-oj-d-05-0-UI.s1 /CLONE=UI-R-C2p-oj-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.21147.1 /TIER=ConsEnd /STK=2 /UG=Rn.21147 /UG_TITLE=ESTs AI137052 1381820_at BI286742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286742 /DB_XREF=gi:14941680 /DB_XREF=UI-R-CT0s-car-c-01-0-UI.s1 /CLONE=UI-R-CT0s-car-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.71077.1 /TIER=ConsEnd /STK=2 /UG=Rn.71077 /UG_TITLE=ESTs BI286742 1381821_at AI454542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454542 /DB_XREF=gi:4294455 /DB_XREF=UI-R-BT0-pw-c-05-0-UI.s1 /CLONE=UI-R-BT0-pw-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.35047.1 /TIER=ConsEnd /STK=2 /UG=Rn.35047 /UG_TITLE=ESTs AI454542 MAM domain containing glycosylphosphatidylinositol anchor 2 Mdga2 314180 NM_199269 0021522 // spinal cord motor neuron differentiation // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 1381822_x_at AI711481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711481 /DB_XREF=gi:5001257 /DB_XREF=UI-R-AA1-zy-e-03-0-UI.s1 /CLONE=UI-R-AA1-zy-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.44939.1 /TIER=ConsEnd /STK=2 /UG=Rn.44939 /UG_TITLE=ESTs AI711481 similar to TP53-regulating kinase (p53-related protein kinase) (Nori-2) LOC685619 685619 XM_002729250 0006468 // protein phosphorylation // inferred from electronic annotation /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1381823_at BE115637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115637 /DB_XREF=gi:8507742 /DB_XREF=UI-R-BJ1-avy-c-02-0-UI.s1 /CLONE=UI-R-BJ1-avy-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.52538.1 /TIER=ConsEnd /STK=2 /UG=Rn.52538 /UG_TITLE=ESTs BE115637 1381824_at AI602689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602689 /DB_XREF=gi:4611850 /DB_XREF=UI-R-G0-ue-g-10-0-UI.s2 /CLONE=UI-R-G0-ue-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.54132.1 /TIER=ConsEnd /STK=2 /UG=Rn.54132 /UG_TITLE=ESTs AI602689 Androgen-induced 1 Aig1 292486 NM_001134425 0016021 // integral to membrane // inferred from electronic annotation 1381825_at BM385475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385475 /DB_XREF=gi:18185528 /DB_XREF=UI-R-CN1-clv-p-22-0-UI.s1 /CLONE=UI-R-CN1-clv-p-22-0-UI /FEA=EST /CNT=2 /TID=Rn.69786.1 /TIER=ConsEnd /STK=2 /UG=Rn.69786 /UG_TITLE=ESTs BM385475 similar to chromosome 1 open reading frame 172 RGD1303271 313018 NM_001004268 1381826_at AI070839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070839 /DB_XREF=gi:3397090 /DB_XREF=UI-R-C2-mv-e-05-0-UI.s1 /CLONE=UI-R-C2-mv-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.19859.1 /TIER=ConsEnd /STK=2 /UG=Rn.19859 /UG_TITLE=ESTs AI070839 1381827_at AW527316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527316 /DB_XREF=gi:7169730 /DB_XREF=UI-R-BO1-ajs-h-08-0-UI.s1 /CLONE=UI-R-BO1-ajs-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.63387.1 /TIER=ConsEnd /STK=2 /UG=Rn.63387 /UG_TITLE=ESTs AW527316 WD repeat domain 25 /// WD repeat domain 25-like Wdr25 /// Wdr25l 299317 /// 314443 NM_001135894 /// XM_234568 1381828_at AA955889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955889 /DB_XREF=gi:4238284 /DB_XREF=UI-R-E1-fd-a-02-0-UI.s1 /CLONE=UI-R-E1-fd-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.32805.1 /TIER=ConsEnd /STK=2 /UG=Rn.32805 /UG_TITLE=ESTs, Weakly similar to JC6082 proximal sequence element-binding transcription factor delta chain (H.sapiens) AA955889 1381829_at AI227744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227744 /DB_XREF=gi:4135277 /DB_XREF=EST224439 /CLONE=RBRCK91 /FEA=EST /CNT=2 /TID=Rn.53657.1 /TIER=ConsEnd /STK=2 /UG=Rn.53657 /UG_TITLE=ESTs, Weakly similar to A56577 microtubule-associated protein MAP 1B - rat (R.norvegicus) AI227744 zinc finger protein 318 Zfp318 685082 XM_001062211 /// XM_002727181 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1381830_x_at AI113337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113337 /DB_XREF=gi:3513286 /DB_XREF=UI-R-C2p-nr-h-11-0-UI.s1 /CLONE=UI-R-C2p-nr-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.22145.1 /TIER=ConsEnd /STK=2 /UG=Rn.22145 /UG_TITLE=ESTs, Highly similar to ST11_HUMAN SERINETHREONINE-PROTEIN KINASE 11 (H.sapiens) AI113337 Serine/threonine kinase 11 Stk11 314621 NM_001108069 0001894 // tissue homeostasis // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0007409 // axonogenesis // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // not recorded /// 0030111 // regulation of Wnt receptor signaling pathway // not recorded /// 0033762 // response to glucagon stimulus // inferred from expression pattern /// 0033993 // response to lipid // inferred from direct assay /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045722 // positive regulation of gluconeogenesis // inferred from mutant phenotype /// 0046320 // regulation of fatty acid oxidation // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051896 // regulation of protein kinase B signaling cascade // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060770 // negative regulation of epithelial cell proliferation involved in prostate gland development // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from mutant phenotype /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0030275 // LRR domain binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction 1381831_at AI112536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112536 /DB_XREF=gi:3512485 /DB_XREF=UI-R-Y0-mn-a-11-0-UI.s1 /CLONE=UI-R-Y0-mn-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.26808.1 /TIER=ConsEnd /STK=2 /UG=Rn.26808 /UG_TITLE=ESTs AI112536 1381832_at BE098813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098813 /DB_XREF=gi:8490682 /DB_XREF=UI-R-BJ1-ate-b-08-0-UI.s1 /CLONE=UI-R-BJ1-ate-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.40859.1 /TIER=ConsEnd /STK=2 /UG=Rn.40859 /UG_TITLE=ESTs BE098813 pyrroline-5-carboxylate reductase-like Pycrl 300035 NM_001011993 0006561 // proline biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004735 // pyrroline-5-carboxylate reductase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1381833_at AW532628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532628 /DB_XREF=gi:7175007 /DB_XREF=UI-R-BS0-amp-f-11-0-UI.s1 /CLONE=UI-R-BS0-amp-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.32474.1 /TIER=ConsEnd /STK=2 /UG=Rn.32474 /UG_TITLE=ESTs AW532628 cell division cycle associated 2 Cdca2 305984 NM_001107273 0051301 // cell division // inferred from electronic annotation 1381834_at AI112905 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112905 /DB_XREF=gi:3512854 /DB_XREF=UI-R-A1-ek-g-03-0-UI.s1 /CLONE=UI-R-A1-ek-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.43357.1 /TIER=ConsEnd /STK=2 /UG=Rn.43357 /UG_TITLE=ESTs, Highly similar to RB48 MOUSE CHROMATIN ASSEMBLY FACTOR 1 P48 SUBUNIT (M.musculus) AI112905 1381835_at BF420021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420021 /DB_XREF=gi:11408010 /DB_XREF=UI-R-BJ2-bpm-a-11-0-UI.s1 /CLONE=UI-R-BJ2-bpm-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.61978.1 /TIER=ConsEnd /STK=2 /UG=Rn.61978 /UG_TITLE=ESTs BF420021 1381836_at BF420334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420334 /DB_XREF=gi:11408323 /DB_XREF=UI-R-BJ2-bpl-f-07-0-UI.s1 /CLONE=UI-R-BJ2-bpl-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.63701.1 /TIER=ConsEnd /STK=2 /UG=Rn.63701 /UG_TITLE=ESTs, Weakly similar to RAB7 RAT RAS-RELATED PROTEIN RAB-7 (R.norvegicus) BF420334 RAB20, member RAS oncogene family Rab20 689377 NM_001109535 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1381837_at AI502137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502137 /DB_XREF=gi:4399988 /DB_XREF=UI-R-C2p-rx-e-07-0-UI.s2 /CLONE=UI-R-C2p-rx-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.35623.1 /TIER=ConsEnd /STK=2 /UG=Rn.35623 /UG_TITLE=ESTs AI502137 1381838_at AI548281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548281 /DB_XREF=gi:4465769 /DB_XREF=UI-R-C3-ti-g-01-0-UI.s1 /CLONE=UI-R-C3-ti-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.17625.1 /TIER=ConsEnd /STK=2 /UG=Rn.17625 /UG_TITLE=ESTs AI548281 1381839_at AA957129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957129 /DB_XREF=gi:4239602 /DB_XREF=UI-R-E1-ge-e-05-0-UI.s1 /CLONE=UI-R-E1-ge-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.9194.1 /TIER=ConsEnd /STK=2 /UG=Rn.9194 /UG_TITLE=ESTs AA957129 1381840_at BF402893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402893 /DB_XREF=gi:11390868 /DB_XREF=UI-R-CA0-bhi-g-06-0-UI.s1 /CLONE=UI-R-CA0-bhi-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.60152.1 /TIER=ConsEnd /STK=2 /UG=Rn.60152 /UG_TITLE=ESTs BF402893 1381841_at BF411958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411958 /DB_XREF=gi:11399912 /DB_XREF=UI-R-BT1-bmx-a-09-0-UI.s1 /CLONE=UI-R-BT1-bmx-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.61959.1 /TIER=ConsEnd /STK=2 /UG=Rn.61959 /UG_TITLE=ESTs BF411958 1381842_at AI511309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511309 /DB_XREF=gi:4417008 /DB_XREF=UI-R-C3-sv-f-08-0-UI.s1 /CLONE=UI-R-C3-sv-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.34681.1 /TIER=ConsEnd /STK=2 /UG=Rn.34681 /UG_TITLE=ESTs, Weakly similar to T30867 Rho-guanine nucleotide exchange factor - mouse (M.musculus) AI511309 1381843_at AI548139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548139 /DB_XREF=gi:4465627 /DB_XREF=UI-R-C3-sm-g-07-0-UI.s1 /CLONE=UI-R-C3-sm-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.43665.1 /TIER=ConsEnd /STK=2 /UG=Rn.43665 /UG_TITLE=ESTs AI548139 1381844_at BM389974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389974 /DB_XREF=gi:18190027 /DB_XREF=UI-R-CN1-cjo-e-16-0-UI.s1 /CLONE=UI-R-CN1-cjo-e-16-0-UI /FEA=EST /CNT=2 /TID=Rn.57260.1 /TIER=ConsEnd /STK=2 /UG=Rn.57260 /UG_TITLE=ESTs BM389974 1381845_at BF387032 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387032 /DB_XREF=gi:11371856 /DB_XREF=UI-R-CA1-bbp-e-01-0-UI.s1 /CLONE=UI-R-CA1-bbp-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.60197.1 /TIER=ConsEnd /STK=2 /UG=Rn.60197 /UG_TITLE=ESTs BF387032 1381846_s_at AI070396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070396 /DB_XREF=gi:3396647 /DB_XREF=UI-R-Y0-lt-f-12-0-UI.s1 /CLONE=UI-R-Y0-lt-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.21298.1 /TIER=ConsEnd /STK=2 /UG=Rn.21298 /UG_TITLE=ESTs AI070396 1381847_at AI137632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137632 /DB_XREF=gi:3638409 /DB_XREF=UI-R-C0-gy-b-09-0-UI.s1 /CLONE=UI-R-C0-gy-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.27472.1 /TIER=ConsEnd /STK=2 /UG=Rn.27472 /UG_TITLE=ESTs AI137632 1381848_at AI228486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228486 /DB_XREF=gi:3812373 /DB_XREF=EST225181 /CLONE=RBRCV52 /FEA=EST /CNT=2 /TID=Rn.35254.1 /TIER=ConsEnd /STK=2 /UG=Rn.35254 /UG_TITLE=ESTs AI228486 1381849_at BE110844 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110844 /DB_XREF=gi:8502949 /DB_XREF=UI-R-BJ1-aus-f-05-0-UI.s1 /CLONE=UI-R-BJ1-aus-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.51936.1 /TIER=ConsEnd /STK=2 /UG=Rn.51936 /UG_TITLE=ESTs BE110844 rCG29683-like /// tubby-like protein 3 LOC100364088 /// Tulp3 100364088 /// 688749 XM_001071995 /// XM_002726453 0001701 // in utero embryonic development // not recorded /// 0001843 // neural tube closure // not recorded /// 0007420 // brain development // not recorded /// 0008589 // regulation of smoothened signaling pathway // not recorded /// 0021904 // dorsal/ventral neural tube patterning // not recorded /// 0021914 // negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning // not recorded /// 0021915 // neural tube development // not recorded /// 0021953 // central nervous system neuron differentiation // not recorded /// 0031076 // embryonic camera-type eye development // not recorded /// 0042733 // embryonic digit morphogenesis // not recorded /// 0045879 // negative regulation of smoothened signaling pathway // not recorded /// 0048702 // embryonic neurocranium morphogenesis // not recorded /// 0060173 // limb development // not recorded /// 0060434 // bronchus morphogenesis // not recorded /// 0060831 // smoothened signaling pathway involved in dorsal/ventral neural tube patterning // not recorded 0005929 // cilium // not recorded /// 0035085 // cilium axoneme // not recorded 1381850_at BF398081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398081 /DB_XREF=gi:11383066 /DB_XREF=UI-R-BS2-bem-b-05-0-UI.s1 /CLONE=UI-R-BS2-bem-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.70851.1 /TIER=ConsEnd /STK=2 /UG=Rn.70851 /UG_TITLE=ESTs BF398081 protein phosphatase 1, regulatory (inhibitor) subunit 12A Ppp1r12a 116670 NM_053890 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0046822 // regulation of nucleocytoplasmic transport // inferred from electronic annotation /// 0046822 // regulation of nucleocytoplasmic transport // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1381851_at AW521903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521903 /DB_XREF=gi:7164288 /DB_XREF=UI-R-BO0-agu-b-09-0-UI.s1 /CLONE=UI-R-BO0-agu-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.45283.1 /TIER=ConsEnd /STK=2 /UG=Rn.45283 /UG_TITLE=ESTs AW521903 Cytoplasmic polyadenylation element binding protein 3 Cpeb3 309510 XM_001080170 /// XM_220043 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1381852_at AI059908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059908 /DB_XREF=gi:3333685 /DB_XREF=UI-R-C1-kr-a-06-0-UI.s1 /CLONE=UI-R-C1-kr-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.19484.1 /TIER=ConsEnd /STK=2 /UG=Rn.19484 /UG_TITLE=ESTs AI059908 1381853_at BE105932 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105932 /DB_XREF=gi:8498034 /DB_XREF=UI-R-BO1-asj-h-05-0-UI.s1 /CLONE=UI-R-BO1-asj-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.47479.1 /TIER=ConsEnd /STK=2 /UG=Rn.47479 /UG_TITLE=ESTs BE105932 1381854_at BF418164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418164 /DB_XREF=gi:11406153 /DB_XREF=UI-R-CN0-blt-c-01-0-UI.s1 /CLONE=UI-R-CN0-blt-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.48117.1 /TIER=ConsEnd /STK=2 /UG=Rn.48117 /UG_TITLE=ESTs BF418164 1381855_at AA851436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851436 /DB_XREF=gi:2938976 /DB_XREF=EST194204 /CLONE=RPLAG56 /FEA=EST /CNT=2 /TID=Rn.12243.1 /TIER=ConsEnd /STK=2 /UG=Rn.12243 /UG_TITLE=ESTs, Moderately similar to TBE_HUMAN TUBULIN EPSILON CHAIN (H.sapiens) AA851436 tubulin, epsilon 1 Tube1 361856 NM_001108536 0007017 // microtubule-based process // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1381856_at BE102880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102880 /DB_XREF=gi:8494979 /DB_XREF=UI-R-BT1-aqq-e-06-0-UI.s1 /CLONE=UI-R-BT1-aqq-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.50107.1 /TIER=ConsEnd /STK=2 /UG=Rn.50107 /UG_TITLE=ESTs BE102880 1381857_at AA963157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963157 /DB_XREF=gi:4278082 /DB_XREF=UI-R-E1-gh-a-01-0-UI.s1 /CLONE=UI-R-E1-gh-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.12223.1 /TIER=ConsEnd /STK=2 /UG=Rn.12223 /UG_TITLE=ESTs AA963157 1381858_at BM387283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387283 /DB_XREF=gi:18187336 /DB_XREF=UI-R-CN1-cjh-f-01-0-UI.s1 /CLONE=UI-R-CN1-cjh-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.8719.1 /TIER=ConsEnd /STK=2 /UG=Rn.8719 /UG_TITLE=ESTs BM387283 tripartite motif-containing 14 Trim14 313236 NM_001107934 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1381859_at BE097018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097018 /DB_XREF=gi:8487949 /DB_XREF=UI-R-BO1-apw-a-06-0-UI.s1 /CLONE=UI-R-BO1-apw-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.49511.1 /TIER=ConsEnd /STK=2 /UG=Rn.49511 /UG_TITLE=ESTs BE097018 1381860_at BF420440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420440 /DB_XREF=gi:11408469 /DB_XREF=UI-R-BJ2-bpw-e-05-0-UI.s1 /CLONE=UI-R-BJ2-bpw-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.78244.1 /TIER=ConsEnd /STK=2 /UG=Rn.78244 /UG_TITLE=ESTs BF420440 1381861_x_at AI703739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI703739 /DB_XREF=gi:4991639 /DB_XREF=UI-R-AB1-yx-f-03-0-UI.s1 /CLONE=UI-R-AB1-yx-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.80803.1 /TIER=ConsEnd /STK=2 /UG=Rn.80803 /UG_TITLE=ESTs, Moderately similar to ACTIN, AORTIC SMOOTH MUSCLE (R.norvegicus) AI703739 actin, alpha, cardiac muscle 1 Actc1 29275 NM_019183 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006936 // muscle contraction // inferred from direct assay /// 0030048 // actin filament-based movement // inferred from electronic annotation /// 0030048 // actin filament-based movement // not recorded /// 0030240 // skeletal muscle thin filament assembly // inferred from electronic annotation /// 0030240 // skeletal muscle thin filament assembly // not recorded /// 0031032 // actomyosin structure organization // inferred from electronic annotation /// 0031032 // actomyosin structure organization // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0055003 // cardiac myofibril assembly // inferred from electronic annotation /// 0055003 // cardiac myofibril assembly // not recorded /// 0055008 // cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055008 // cardiac muscle tissue morphogenesis // not recorded /// 0060047 // heart contraction // not recorded /// 0060047 // heart contraction // inferred from electronic annotation /// 0060048 // cardiac muscle contraction // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // not recorded /// 0005884 // actin filament // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0030017 // sarcomere // not recorded /// 0030017 // sarcomere // inferred from electronic annotation /// 0031674 // I band // inferred from electronic annotation /// 0031674 // I band // not recorded /// 0042643 // actomyosin, actin part // inferred from electronic annotation /// 0042643 // actomyosin, actin part // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0017022 // myosin binding // inferred from electronic annotation /// 0017022 // myosin binding // not recorded 1381862_at AW524296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524296 /DB_XREF=gi:7166681 /DB_XREF=UI-R-BO0-aig-f-08-0-UI.s1 /CLONE=UI-R-BO0-aig-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.41489.1 /TIER=ConsEnd /STK=2 /UG=Rn.41489 /UG_TITLE=ESTs AW524296 1381863_at AI071253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071253 /DB_XREF=gi:3397468 /DB_XREF=UI-R-C2-nb-f-01-0-UI.s1 /CLONE=UI-R-C2-nb-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.20485.1 /TIER=ConsEnd /STK=2 /UG=Rn.20485 /UG_TITLE=ESTs AI071253 1381864_at AI059122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059122 /DB_XREF=gi:3332899 /DB_XREF=UI-R-C1-lc-a-03-0-UI.s1 /CLONE=UI-R-C1-lc-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.19074.1 /TIER=ConsEnd /STK=2 /UG=Rn.19074 /UG_TITLE=ESTs AI059122 1381865_at AI406463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406463 /DB_XREF=gi:4249967 /DB_XREF=EST234749 /CLONE=RBRDN29 /FEA=EST /CNT=2 /TID=Rn.43397.1 /TIER=ConsEnd /STK=2 /UG=Rn.43397 /UG_TITLE=ESTs AI406463 1381866_at BF388061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388061 /DB_XREF=gi:11372885 /DB_XREF=UI-R-CA1-bbx-g-12-0-UI.s1 /CLONE=UI-R-CA1-bbx-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.59748.1 /TIER=ConsEnd /STK=2 /UG=Rn.59748 /UG_TITLE=ESTs BF388061 1381867_at AI454783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454783 /DB_XREF=gi:4296140 /DB_XREF=UI-R-C2p-qm-c-06-0-UI.s1 /CLONE=UI-R-C2p-qm-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.49466.1 /TIER=ConsEnd /STK=2 /UG=Rn.49466 /UG_TITLE=ESTs AI454783 1381868_at BF549366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549366 /DB_XREF=gi:11640473 /DB_XREF=UI-R-A0-bc-a-03-0-UI.r1 /CLONE=UI-R-A0-bc-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.64045.1 /TIER=ConsEnd /STK=2 /UG=Rn.64045 /UG_TITLE=ESTs BF549366 1381869_at AW531834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531834 /DB_XREF=gi:7174248 /DB_XREF=UI-R-C4-akz-g-03-0-UI.s1 /CLONE=UI-R-C4-akz-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.27040.1 /TIER=ConsEnd /STK=2 /UG=Rn.27040 /UG_TITLE=ESTs AW531834 1381870_at BG377539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377539 /DB_XREF=gi:13302011 /DB_XREF=UI-R-CU0-buz-a-03-0-UI.s1 /CLONE=UI-R-CU0-buz-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.66500.1 /TIER=ConsEnd /STK=2 /UG=Rn.66500 /UG_TITLE=ESTs BG377539 1381871_at BM383359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383359 /DB_XREF=gi:18183412 /DB_XREF=UI-R-DM1-cka-e-11-0-UI.s1 /CLONE=UI-R-DM1-cka-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.20867.1 /TIER=ConsEnd /STK=2 /UG=Rn.20867 /UG_TITLE=ESTs BM383359 1381872_at AI137061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137061 /DB_XREF=gi:3637838 /DB_XREF=UI-R-C2p-oj-f-04-0-UI.s1 /CLONE=UI-R-C2p-oj-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.27302.1 /TIER=ConsEnd /STK=2 /UG=Rn.27302 /UG_TITLE=ESTs AI137061 1381873_at AI144803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144803 /DB_XREF=gi:3666602 /DB_XREF=UI-R-BT0-pm-a-06-0-UI.s1 /CLONE=UI-R-BT0-pm-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.27689.1 /TIER=ConsEnd /STK=2 /UG=Rn.27689 /UG_TITLE=ESTs AI144803 1381874_at BF548737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548737 /DB_XREF=gi:11639844 /DB_XREF=UI-R-A0-aj-f-08-0-UI.r1 /CLONE=UI-R-A0-aj-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.63932.1 /TIER=ConsEnd /STK=2 /UG=Rn.63932 /UG_TITLE=ESTs, Highly similar to TRANSCRIPTION FACTOR SOX-2 (M.musculus) BF548737 SRY (sex determining region Y)-box 2 Sox2 499593 NM_001109181 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001649 // osteoblast differentiation // not recorded /// 0001654 // eye development // not recorded /// 0001708 // cell fate specification // not recorded /// 0002052 // positive regulation of neuroblast proliferation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0009611 // response to wounding // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0019827 // stem cell maintenance // not recorded /// 0021879 // forebrain neuron differentiation // not recorded /// 0021983 // pituitary gland development // not recorded /// 0021984 // adenohypophysis development // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030539 // male genitalia development // not recorded /// 0030858 // positive regulation of epithelial cell differentiation // not recorded /// 0030900 // forebrain development // not recorded /// 0030910 // olfactory placode formation // not recorded /// 0032526 // response to retinoic acid // not recorded /// 0035019 // somatic stem cell maintenance // not recorded /// 0042221 // response to chemical stimulus // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0043281 // regulation of caspase activity // not recorded /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0043586 // tongue development // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045668 // negative regulation of osteoblast differentiation // not recorded /// 0045747 // positive regulation of Notch signaling pathway // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046148 // pigment biosynthetic process // not recorded /// 0048286 // lung alveolus development // not recorded /// 0048568 // embryonic organ development // not recorded /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded /// 0048663 // neuron fate commitment // not recorded /// 0048839 // inner ear development // not recorded /// 0048852 // diencephalon morphogenesis // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // not recorded /// 0050973 // detection of mechanical stimulus involved in equilibrioception // not recorded /// 0060042 // retina morphogenesis in camera-type eye // not recorded /// 0060235 // lens induction in camera-type eye // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // not recorded /// 0070848 // response to growth factor stimulus // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0035198 // miRNA binding // not recorded /// 0043565 // sequence-specific DNA binding // not recorded 1381875_at BM386847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386847 /DB_XREF=gi:18186900 /DB_XREF=UI-R-CN1-cjh-m-18-0-UI.s1 /CLONE=UI-R-CN1-cjh-m-18-0-UI /FEA=EST /CNT=2 /TID=Rn.18496.1 /TIER=ConsEnd /STK=2 /UG=Rn.18496 /UG_TITLE=ESTs, Moderately similar to NMI_MOUSE N-MYC-INTERACTOR (NMI) (N-MYC AND STAT INTERACTOR) (M.musculus) BM386847 N-myc (and STAT) interactor Nmi 311021 NM_001034148 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1381876_at AI008494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008494 /DB_XREF=gi:4132899 /DB_XREF=EST202945 /CLONE=REMAY05 /FEA=EST /CNT=2 /TID=Rn.23357.1 /TIER=ConsEnd /STK=2 /UG=Rn.23357 /UG_TITLE=ESTs AI008494 Fraser syndrome 1 homolog (human) Fras1 289486 XM_001062222 /// XM_214004 0002009 // morphogenesis of an epithelium // not recorded /// 0007154 // cell communication // inferred from electronic annotation /// 0015031 // protein transport // not recorded /// 0043588 // skin development // not recorded 0005604 // basement membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1381877_at AI113234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113234 /DB_XREF=gi:3513183 /DB_XREF=UI-R-C2p-nt-b-08-0-UI.s1 /CLONE=UI-R-C2p-nt-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.26959.1 /TIER=ConsEnd /STK=2 /UG=Rn.26959 /UG_TITLE=ESTs AI113234 1381878_at AI578566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578566 /DB_XREF=gi:4562942 /DB_XREF=UI-R-AA0-wl-g-03-0-UI.s1 /CLONE=UI-R-AA0-wl-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.35588.1 /TIER=ConsEnd /STK=2 /UG=Rn.35588 /UG_TITLE=ESTs, Weakly similar to YEMA DROME YEMANUCLEIN-ALPHA (D.melanogaster) AI578566 1381879_x_at BG379120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379120 /DB_XREF=gi:13303592 /DB_XREF=UI-R-BT1-bni-f-06-0-UI.s1 /CLONE=UI-R-BT1-bni-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.66642.1 /TIER=ConsEnd /STK=2 /UG=Rn.66642 /UG_TITLE=ESTs BG379120 1381880_at AW530117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530117 /DB_XREF=gi:7172531 /DB_XREF=UI-R-C4-ald-g-04-0-UI.s1 /CLONE=UI-R-C4-ald-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.41996.1 /TIER=ConsEnd /STK=2 /UG=Rn.41996 /UG_TITLE=ESTs AW530117 1381881_at BF392037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392037 /DB_XREF=gi:11376894 /DB_XREF=UI-R-CA0-bfg-e-03-0-UI.s1 /CLONE=UI-R-CA0-bfg-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.45097.1 /TIER=ConsEnd /STK=2 /UG=Rn.45097 /UG_TITLE=ESTs BF392037 Pannexin 1 Panx1 315435 NM_199397 0006812 // cation transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0007267 // cell-cell signaling // inferred from mutant phenotype /// 0033198 // response to ATP // inferred from electronic annotation /// 0033198 // response to ATP // not recorded /// 0050715 // positive regulation of cytokine secretion // inferred from electronic annotation /// 0050715 // positive regulation of cytokine secretion // not recorded /// 0050717 // positive regulation of interleukin-1 alpha secretion // inferred from electronic annotation /// 0050717 // positive regulation of interleukin-1 alpha secretion // not recorded /// 0050718 // positive regulation of interleukin-1 beta secretion // inferred from electronic annotation /// 0050718 // positive regulation of interleukin-1 beta secretion // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005921 // gap junction // inferred from mutant phenotype /// 0005921 // gap junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0032059 // bleb // inferred from electronic annotation /// 0032059 // bleb // not recorded 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005243 // gap junction channel activity // inferred from mutant phenotype /// 0046982 // protein heterodimerization activity // inferred from mutant phenotype 1381882_at AI072357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072357 /DB_XREF=gi:3398551 /DB_XREF=UI-R-C2-ng-f-11-0-UI.s1 /CLONE=UI-R-C2-ng-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.20135.1 /TIER=ConsEnd /STK=2 /UG=Rn.20135 /UG_TITLE=ESTs AI072357 FYVE, RhoGEF and PH domain containing 6 Fgd6 500824 NM_001137645 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1381883_at BF406676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406676 /DB_XREF=gi:11394651 /DB_XREF=UI-R-BJ2-bpv-g-12-0-UI.s1 /CLONE=UI-R-BJ2-bpv-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.60049.1 /TIER=ConsEnd /STK=2 /UG=Rn.60049 /UG_TITLE=ESTs BF406676 androgen down regulated in mouse prostate LOC100362555 100362555 XM_002725981 /// XM_002729045 1381884_at BM387703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387703 /DB_XREF=gi:18187756 /DB_XREF=UI-R-CN1-cjj-h-14-0-UI.s1 /CLONE=UI-R-CN1-cjj-h-14-0-UI /FEA=EST /CNT=2 /TID=Rn.82060.1 /TIER=ConsEnd /STK=2 /UG=Rn.82060 /UG_TITLE=ESTs BM387703 1381885_at BE102910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102910 /DB_XREF=gi:8495004 /DB_XREF=UI-R-BT1-aqq-h-04-0-UI.s1 /CLONE=UI-R-BT1-aqq-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.79067.1 /TIER=ConsEnd /STK=2 /UG=Rn.79067 /UG_TITLE=ESTs BE102910 1381886_at AI576825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576825 /DB_XREF=gi:4561201 /DB_XREF=UI-R-AB0-vx-d-01-0-UI.s1 /CLONE=UI-R-AB0-vx-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.44906.1 /TIER=ConsEnd /STK=2 /UG=Rn.44906 /UG_TITLE=ESTs, Highly similar to TRANSCRIPTIONAL REPRESSOR PROTEIN YY1 (M.musculus) AI576825 YY1 transcription factor Yy1 24919 NM_173290 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0045939 // negative regulation of steroid metabolic process // non-traceable author statement /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from direct assay /// 0005667 // transcription factor complex // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0031519 // PcG protein complex // inferred from electronic annotation /// 0031519 // PcG protein complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016566 // specific transcriptional repressor activity // inferred from direct assay /// 0016566 // specific transcriptional repressor activity // not recorded 1381887_x_at AW530368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530368 /DB_XREF=gi:7172823 /DB_XREF=UI-R-BU0-amw-d-12-0-UI.s1 /CLONE=UI-R-BU0-amw-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.49168.1 /TIER=ConsEnd /STK=2 /UG=Rn.49168 /UG_TITLE=ESTs AW530368 Similar to KIAA2026 protein RGD1311595 309307 XM_001079649 /// XM_219779 1381888_x_at AA848451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848451 /DB_XREF=gi:2935991 /DB_XREF=EST191211 /CLONE=RKIAC43 /FEA=EST /CNT=2 /TID=Rn.6365.1 /TIER=ConsEnd /STK=2 /UG=Rn.6365 /UG_TITLE=ESTs AA848451 PARK2 co-regulated-like Pacrgl 360947 XM_001057772 /// XM_341225 0005488 // binding // inferred from electronic annotation 1381889_at AI229968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229968 /DB_XREF=gi:4135500 /DB_XREF=EST226663 /CLONE=REMCP08 /FEA=EST /CNT=2 /TID=Rn.21343.1 /TIER=ConsEnd /STK=2 /UG=Rn.21343 /UG_TITLE=ESTs AI229968 cell division cycle 123 homolog (S. cerevisiae) Cdc123 116656 NM_053877 0000080 // G1 phase of mitotic cell cycle // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1381890_at BF390097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390097 /DB_XREF=gi:11374939 /DB_XREF=UI-R-CA1-bcj-b-11-0-UI.s1 /CLONE=UI-R-CA1-bcj-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.52368.1 /TIER=ConsEnd /STK=2 /UG=Rn.52368 /UG_TITLE=ESTs BF390097 1381891_at AI070060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070060 /DB_XREF=gi:3396311 /DB_XREF=UI-R-C1-ln-h-09-0-UI.s1 /CLONE=UI-R-C1-ln-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.61069.1 /TIER=ConsEnd /STK=2 /UG=Rn.61069 /UG_TITLE=ESTs, Weakly similar to PTNL RAT PROTEIN TYROSINE PHOSPHATASE, NON-RECEPTOR TYPE 21 (R.norvegicus) AI070060 Protein tyrosine phosphatase, non-receptor type 14 Ptpn14 305064 NM_001107200 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0005856 // cytoskeleton // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1381892_at BE097695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097695 /DB_XREF=gi:8488626 /DB_XREF=UI-R-BO1-aqa-f-07-0-UI.s1 /CLONE=UI-R-BO1-aqa-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.49664.1 /TIER=ConsEnd /STK=2 /UG=Rn.49664 /UG_TITLE=ESTs BE097695 neuron navigator 2 Nav2 171563 NM_138529 0007399 // nervous system development // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1381893_at BF396091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396091 /DB_XREF=gi:11381063 /DB_XREF=UI-R-CA1-bcb-c-01-0-UI.s1 /CLONE=UI-R-CA1-bcb-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.58521.1 /TIER=ConsEnd /STK=2 /UG=Rn.58521 /UG_TITLE=ESTs BF396091 hypothetical protein LOC100359595 /// hypothetical protein LOC100366234 LOC100359595 /// LOC100366234 100359595 /// 100366234 XM_002725864 /// XM_002725865 /// XM_002728964 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1381894_at AI547542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547542 /DB_XREF=gi:4465030 /DB_XREF=UI-R-C3-sr-d-02-0-UI.s1 /CLONE=UI-R-C3-sr-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.41717.1 /TIER=ConsEnd /STK=2 /UG=Rn.41717 /UG_TITLE=ESTs AI547542 protein tyrosine phosphatase, non-receptor type 4 Ptpn4 246116 NM_001100479 0016311 // dephosphorylation // not recorded 0004726 // non-membrane spanning protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004726 // non-membrane spanning protein tyrosine phosphatase activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1381895_at AW435074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435074 /DB_XREF=gi:6966381 /DB_XREF=UI-R-BJ0p-afy-c-11-0-UI.s1 /CLONE=UI-R-BJ0p-afy-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.29444.1 /TIER=ConsEnd /STK=2 /UG=Rn.29444 /UG_TITLE=ESTs, Highly similar to NRF1_RAT NUCLEAR RESPIRATORY FACTOR-1 (NRF-1) (ALPHA PALINDROMIC BINDING PROTEIN) (ALPHA-PAL) (R.norvegicus) AW435074 nuclear respiratory factor 1 Nrf1 312195 NM_001100708 0001666 // response to hypoxia // inferred from expression pattern /// 0006350 // transcription // inferred from electronic annotation /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051593 // response to folic acid // inferred from expression pattern /// 0051602 // response to electrical stimulus // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation 1381896_at AI411637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411637 /DB_XREF=gi:4255141 /DB_XREF=EST239931 /CLONE=ROVEL58 /FEA=EST /CNT=2 /TID=Rn.34665.1 /TIER=ConsEnd /STK=2 /UG=Rn.34665 /UG_TITLE=ESTs AI411637 1381897_at AI501232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501232 /DB_XREF=gi:4399083 /DB_XREF=UI-R-C2p-ry-d-02-0-UI.s1 /CLONE=UI-R-C2p-ry-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.35310.1 /TIER=ConsEnd /STK=2 /UG=Rn.35310 /UG_TITLE=ESTs AI501232 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8 Chst8 308511 NM_001107504 0006790 // sulfur compound metabolic process // inferred from electronic annotation /// 0006790 // sulfur compound metabolic process // not recorded /// 0016051 // carbohydrate biosynthetic process // inferred from electronic annotation /// 0030166 // proteoglycan biosynthetic process // inferred from electronic annotation /// 0030166 // proteoglycan biosynthetic process // not recorded /// 0042446 // hormone biosynthetic process // inferred from electronic annotation /// 0042446 // hormone biosynthetic process // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0001537 // N-acetylgalactosamine 4-O-sulfotransferase activity // inferred from electronic annotation /// 0001537 // N-acetylgalactosamine 4-O-sulfotransferase activity // not recorded /// 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1381898_at AI576907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576907 /DB_XREF=gi:4561283 /DB_XREF=UI-R-AB0-vt-f-08-0-UI.s1 /CLONE=UI-R-AB0-vt-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.39137.1 /TIER=ConsEnd /STK=2 /UG=Rn.39137 /UG_TITLE=ESTs AI576907 1381899_at AW534794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534794 /DB_XREF=gi:7177208 /DB_XREF=UI-R-BS0-anw-c-10-0-UI.s1 /CLONE=UI-R-BS0-anw-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.19154.1 /TIER=ConsEnd /STK=2 /UG=Rn.19154 /UG_TITLE=ESTs AW534794 1381900_at AI407705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407705 /DB_XREF=gi:4251209 /DB_XREF=EST235995 /CLONE=ROVEB29 /FEA=EST /CNT=2 /TID=Rn.27138.1 /TIER=ConsEnd /STK=2 /UG=Rn.27138 /UG_TITLE=ESTs AI407705 1381901_at BE108013 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108013 /DB_XREF=gi:8500118 /DB_XREF=UI-R-CA0-awz-d-07-0-UI.s1 /CLONE=UI-R-CA0-awz-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.49496.1 /TIER=ConsEnd /STK=2 /UG=Rn.49496 /UG_TITLE=ESTs BE108013 transmembrane protein 212 Tmem212 499586 NM_001164438 /// NM_001164439 1381902_at BE116321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116321 /DB_XREF=gi:8508426 /DB_XREF=UI-R-BS1-ayb-h-09-0-UI.s1 /CLONE=UI-R-BS1-ayb-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.50125.1 /TIER=ConsEnd /STK=2 /UG=Rn.50125 /UG_TITLE=ESTs BE116321 zinc finger protein 292 Znf292 50552 NM_001008879 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008134 // transcription factor binding // non-traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay 1381903_at AW533341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533341 /DB_XREF=gi:7175755 /DB_XREF=UI-R-BU0-anf-g-04-0-UI.s1 /CLONE=UI-R-BU0-anf-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.41874.1 /TIER=ConsEnd /STK=2 /UG=Rn.41874 /UG_TITLE=ESTs AW533341 F-box protein 33 Fbxo33 314157 NM_001108023 1381904_at AW527641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527641 /DB_XREF=gi:7170055 /DB_XREF=UI-R-BT1-ajz-e-10-0-UI.s1 /CLONE=UI-R-BT1-ajz-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.46604.1 /TIER=ConsEnd /STK=2 /UG=Rn.46604 /UG_TITLE=ESTs AW527641 G7c protein G7c 309611 NM_212499 0005576 // extracellular region // inferred from electronic annotation 1381905_at AI230826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230826 /DB_XREF=gi:3814713 /DB_XREF=EST227521 /CLONE=REMDB69 /FEA=EST /CNT=2 /TID=Rn.24527.1 /TIER=ConsEnd /STK=2 /UG=Rn.24527 /UG_TITLE=ESTs AI230826 1381906_at AA944304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944304 /DB_XREF=gi:3104220 /DB_XREF=EST199803 /CLONE=REMAF15 /FEA=EST /CNT=2 /TID=Rn.48993.1 /TIER=ConsEnd /STK=2 /UG=Rn.48993 /UG_TITLE=ESTs, Moderately similar to TD52_MOUSE TUMOR PROTEIN D52 (MD52) (M.musculus) AA944304 tumor protein D52 Tpd52 294900 NM_001106421 1381907_at AA955915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955915 /DB_XREF=gi:4238310 /DB_XREF=UI-R-E1-fd-c-08-0-UI.s1 /CLONE=UI-R-E1-fd-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.32809.1 /TIER=ConsEnd /STK=2 /UG=Rn.32809 /UG_TITLE=ESTs AA955915 1381908_at BE114525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114525 /DB_XREF=gi:8506630 /DB_XREF=UI-R-BJ1-awm-b-09-0-UI.s1 /CLONE=UI-R-BJ1-awm-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.49065.1 /TIER=ConsEnd /STK=2 /UG=Rn.49065 /UG_TITLE=ESTs, Weakly similar to 2008109A set gene (R.norvegicus) BE114525 TSPY-like 5 Tspyl5 314555 XM_001057731 /// XM_234776 0006334 // nucleosome assembly // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1381909_at AI501247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501247 /DB_XREF=gi:4399098 /DB_XREF=UI-R-C2p-ry-e-05-0-UI.s1 /CLONE=UI-R-C2p-ry-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.28249.1 /TIER=ConsEnd /STK=2 /UG=Rn.28249 /UG_TITLE=ESTs AI501247 Heat shock protein 12B Hspa12b 311427 NM_001107778 1381910_at BG373774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373774 /DB_XREF=gi:13270311 /DB_XREF=UI-R-CV1-bsh-g-03-0-UI.s1 /CLONE=UI-R-CV1-bsh-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.76517.1 /TIER=ConsEnd /STK=2 /UG=Rn.76517 /UG_TITLE=ESTs BG373774 1381911_at AW251138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251138 /DB_XREF=gi:6594694 /DB_XREF=UI-R-BJ0-adi-b-05-0-UI.s1 /CLONE=UI-R-BJ0-adi-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.44678.1 /TIER=ConsEnd /STK=2 /UG=Rn.44678 /UG_TITLE=ESTs, Weakly similar to TMOD MOUSE TROPOMODULIN (M.musculus) AW251138 Leiomodin 3 (fetal) Lmod3 500267 XM_575617 0005856 // cytoskeleton // inferred from electronic annotation 0005523 // tropomyosin binding // inferred from electronic annotation 1381912_at AW532251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532251 /DB_XREF=gi:7174665 /DB_XREF=UI-R-C4-all-c-01-0-UI.s1 /CLONE=UI-R-C4-all-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.47910.1 /TIER=ConsEnd /STK=2 /UG=Rn.47910 /UG_TITLE=ESTs AW532251 1381913_at AW526566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526566 /DB_XREF=gi:7168980 /DB_XREF=UI-R-BO1-ajc-e-07-0-UI.s1 /CLONE=UI-R-BO1-ajc-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.54938.1 /TIER=ConsEnd /STK=2 /UG=Rn.54938 /UG_TITLE=ESTs AW526566 V-set and immunoglobulin domain containing 10 like Vsig10l 308556 XM_001080344 /// XM_218633 1381914_at BE113907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113907 /DB_XREF=gi:8506012 /DB_XREF=UI-R-CA0-axe-h-02-0-UI.s1 /CLONE=UI-R-CA0-axe-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.49156.1 /TIER=ConsEnd /STK=2 /UG=Rn.49156 /UG_TITLE=ESTs BE113907 1381915_at AI111735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111735 /DB_XREF=gi:3511684 /DB_XREF=UI-R-Y0-me-b-04-0-UI.s1 /CLONE=UI-R-Y0-me-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.29775.1 /TIER=ConsEnd /STK=2 /UG=Rn.29775 /UG_TITLE=ESTs AI111735 similar to expressed sequence AW549877 RGD1305938 310362 NM_001134548 1381916_at AA997234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997234 /DB_XREF=gi:4282561 /DB_XREF=UI-R-C0-hs-d-09-0-UI.s1 /CLONE=UI-R-C0-hs-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.62680.1 /TIER=ConsEnd /STK=2 /UG=Rn.62680 /UG_TITLE=ESTs AA997234 1381917_at AI578081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578081 /DB_XREF=gi:4562457 /DB_XREF=UI-R-C3-tk-c-12-0-UI.s2 /CLONE=UI-R-C3-tk-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.38103.1 /TIER=ConsEnd /STK=2 /UG=Rn.38103 /UG_TITLE=ESTs AI578081 dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit Dpm1 296394 NM_001106544 0006506 // GPI anchor biosynthetic process // not recorded /// 0019348 // dolichol metabolic process // inferred from direct assay /// 0019348 // dolichol metabolic process // not recorded /// 0019673 // GDP-mannose metabolic process // inferred from direct assay /// 0035268 // protein mannosylation // not recorded /// 0035269 // protein O-linked mannosylation // not recorded 0005624 // membrane fraction // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0033185 // dolichol-phosphate-mannose synthase complex // not recorded 0004169 // dolichyl-phosphate-mannose-protein mannosyltransferase activity // not recorded /// 0004582 // dolichyl-phosphate beta-D-mannosyltransferase activity // inferred from direct assay /// 0004582 // dolichyl-phosphate beta-D-mannosyltransferase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005537 // mannose binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0043178 // alcohol binding // inferred from direct assay 1381918_at AI144776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144776 /DB_XREF=gi:3666575 /DB_XREF=UI-R-BT0-pr-d-06-0-UI.s1 /CLONE=UI-R-BT0-pr-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.23810.1 /TIER=ConsEnd /STK=2 /UG=Rn.23810 /UG_TITLE=ESTs AI144776 Casein kinase 1, alpha 1 Csnk1a1 113927 NM_053615 0000902 // cell morphogenesis // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0001948 // glycoprotein binding // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0051219 // phosphoprotein binding // inferred from direct assay 1381919_at BI290986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290986 /DB_XREF=gi:14950101 /DB_XREF=UI-R-DK0-cge-a-07-0-UI.s1 /CLONE=UI-R-DK0-cge-a-07-0-UI /FEA=EST /CNT=2 /TID=Rn.69203.1 /TIER=ConsEnd /STK=2 /UG=Rn.69203 /UG_TITLE=ESTs BI290986 Hermansky-Pudlak syndrome 6 Hps6 309446 NM_181432 0006996 // organelle organization // inferred from electronic annotation /// 0006996 // organelle organization // not recorded /// 0007596 // blood coagulation // inferred from electronic annotation /// 0007596 // blood coagulation // not recorded /// 0030318 // melanocyte differentiation // inferred from electronic annotation /// 0030318 // melanocyte differentiation // not recorded /// 0043473 // pigmentation // inferred from electronic annotation /// 0043473 // pigmentation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1381920_at AI502118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502118 /DB_XREF=gi:4399963 /DB_XREF=UI-R-C2p-rx-c-06-0-UI.s2 /CLONE=UI-R-C2p-rx-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.18528.1 /TIER=ConsEnd /STK=2 /UG=Rn.18528 /UG_TITLE=ESTs AI502118 1381921_at BE110228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110228 /DB_XREF=gi:8502333 /DB_XREF=UI-R-CA0-axk-e-10-0-UI.s1 /CLONE=UI-R-CA0-axk-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.49855.1 /TIER=ConsEnd /STK=2 /UG=Rn.49855 /UG_TITLE=ESTs BE110228 1381922_at BG377720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377720 /DB_XREF=gi:13302192 /DB_XREF=UI-R-CU0-bva-c-03-0-UI.s1 /CLONE=UI-R-CU0-bva-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.56503.1 /TIER=ConsEnd /STK=2 /UG=Rn.56503 /UG_TITLE=ESTs BG377720 solute carrier family 5 (sodium/glucose cotransporter), member 11 Slc5a11 252854 NM_001100482 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation 1381923_at AI454658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454658 /DB_XREF=gi:4295265 /DB_XREF=UI-R-C2p-qo-g-11-0-UI.s1 /CLONE=UI-R-C2p-qo-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.37742.1 /TIER=ConsEnd /STK=2 /UG=Rn.37742 /UG_TITLE=ESTs AI454658 similar to LOC387763 protein RGD1564664 499839 NM_001110055 1381924_at BF412180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412180 /DB_XREF=gi:11400169 /DB_XREF=UI-R-BT1-bmu-g-11-0-UI.s1 /CLONE=UI-R-BT1-bmu-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.47098.1 /TIER=ConsEnd /STK=2 /UG=Rn.47098 /UG_TITLE=ESTs BF412180 similar to hypothetical protein FLJ31606 RGD1561507 292078 NM_001106195 1381925_x_at AI412401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412401 /DB_XREF=gi:4255905 /DB_XREF=EST240700 /CLONE=RBRDU39 /FEA=EST /CNT=2 /TID=Rn.23134.1 /TIER=ConsEnd /STK=2 /UG=Rn.23134 /UG_TITLE=ESTs AI412401 AT rich interactive domain 1B (Swi1 like) Arid1b 282546 NM_172157 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0016514 // SWI/SNF complex // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1381926_at AA964273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964273 /DB_XREF=gi:4279149 /DB_XREF=UI-R-C0-gy-b-06-0-UI.s1 /CLONE=UI-R-C0-gy-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.31818.1 /TIER=ConsEnd /STK=2 /UG=Rn.31818 /UG_TITLE=ESTs AA964273 similar to Protein SYS1 homolog LOC685079 685079 XM_001062200 /// XM_002726293 0000139 // Golgi membrane // inferred from electronic annotation 1381927_at AW522464 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522464 /DB_XREF=gi:7164849 /DB_XREF=UI-R-BO0-agv-e-04-0-UI.s1 /CLONE=UI-R-BO0-agv-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.45397.1 /TIER=ConsEnd /STK=2 /UG=Rn.45397 /UG_TITLE=ESTs AW522464 hypothetical protein LOC100365876 LOC100365876 100365876 XM_002726060 1381928_at AI235537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235537 /DB_XREF=gi:3829043 /DB_XREF=EST232099 /CLONE=ROVCT21 /FEA=EST /CNT=2 /TID=Rn.55758.1 /TIER=ConsEnd /STK=2 /UG=Rn.55758 /UG_TITLE=ESTs AI235537 1381929_at AI555382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555382 /DB_XREF=gi:4487745 /DB_XREF=UI-R-C2p-qp-b-11-0-UI.s1 /CLONE=UI-R-C2p-qp-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.7548.1 /TIER=ConsEnd /STK=2 /UG=Rn.7548 /UG_TITLE=ESTs AI555382 1381930_at AI030791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030791 /DB_XREF=gi:3248617 /DB_XREF=UI-R-C0-jo-f-06-0-UI.s1 /CLONE=UI-R-C0-jo-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.37651.1 /TIER=ConsEnd /STK=2 /UG=Rn.37651 /UG_TITLE=ESTs AI030791 Chaperonin containing Tcp1, subunit 5 (epsilon) Cct5 294864 NM_001004078 0006457 // protein folding // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0009615 // response to virus // not recorded /// 0044267 // cellular protein metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005832 // chaperonin-containing T-complex // inferred from electronic annotation /// 0005832 // chaperonin-containing T-complex // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1381931_at AI229552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229552 /DB_XREF=gi:3813439 /DB_XREF=EST226247 /CLONE=REMCI16 /FEA=EST /CNT=2 /TID=Rn.40404.1 /TIER=ConsEnd /STK=2 /UG=Rn.40404 /UG_TITLE=ESTs AI229552 actin-binding LIM protein 1 Ablim1 307989 NM_001044394 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0015629 // actin cytoskeleton // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1381932_at AI136660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136660 /DB_XREF=gi:3637437 /DB_XREF=UI-R-C2p-ob-h-06-0-UI.s1 /CLONE=UI-R-C2p-ob-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.81001.1 /TIER=ConsEnd /STK=2 /UG=Rn.81001 /UG_TITLE=ESTs AI136660 family with sequence similarity 46, member A Fam46a 300870 NM_001106844 1381933_at AW434510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434510 /DB_XREF=gi:6965817 /DB_XREF=UI-R-BJ0p-aff-a-01-0-UI.s1 /CLONE=UI-R-BJ0p-aff-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.41222.1 /TIER=ConsEnd /STK=2 /UG=Rn.41222 /UG_TITLE=ESTs AW434510 Replication factor C (activator 1) 5 Rfc5 304528 NM_001107146 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded /// 0006297 // nucleotide-excision repair, DNA gap filling // not recorded 0005654 // nucleoplasm // not recorded /// 0005663 // DNA replication factor C complex // inferred from electronic annotation /// 0005663 // DNA replication factor C complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003689 // DNA clamp loader activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1381934_at AW529624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529624 /DB_XREF=gi:7172038 /DB_XREF=UI-R-BT1-akn-d-07-0-UI.s1 /CLONE=UI-R-BT1-akn-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.44956.1 /TIER=ConsEnd /STK=2 /UG=Rn.44956 /UG_TITLE=ESTs AW529624 zinc finger protein 91 Zfp91 246282 NM_001169120 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1381935_at BE115780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115780 /DB_XREF=gi:8507885 /DB_XREF=UI-R-CA0-axs-g-08-0-UI.s1 /CLONE=UI-R-CA0-axs-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.49097.1 /TIER=ConsEnd /STK=2 /UG=Rn.49097 /UG_TITLE=ESTs BE115780 Sarcospan Sspn 500364 NM_001109255 0016021 // integral to membrane // inferred from electronic annotation /// 0030133 // transport vesicle // not recorded /// 0042383 // sarcolemma // not recorded 1381936_at BF390092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390092 /DB_XREF=gi:11374934 /DB_XREF=UI-R-CA1-bcj-b-05-0-UI.s1 /CLONE=UI-R-CA1-bcj-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.79606.1 /TIER=ConsEnd /STK=2 /UG=Rn.79606 /UG_TITLE=ESTs, Highly similar to KCCG RAT CALCIUMCALMODULIN-DEPENDENT PROTEIN KINASE TYPE II GAMMA CHAIN (R.norvegicus) BF390092 calcium/calmodulin-dependent protein kinase II gamma Camk2g 171140 NM_133605 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0001666 // response to hypoxia // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006979 // response to oxidative stress // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // traceable author statement 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005954 // calcium- and calmodulin-dependent protein kinase complex // traceable author statement /// 0030666 // endocytic vesicle membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from direct assay /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1381937_at AI045406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045406 /DB_XREF=gi:3292225 /DB_XREF=UI-R-C1-kg-c-11-0-UI.s1 /CLONE=UI-R-C1-kg-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.16205.1 /TIER=ConsEnd /STK=2 /UG=Rn.16205 /UG_TITLE=ESTs AI045406 1381938_at BE120581 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120581 /DB_XREF=gi:8512686 /DB_XREF=UI-R-CA0-bav-b-12-0-UI.s1 /CLONE=UI-R-CA0-bav-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.49941.1 /TIER=ConsEnd /STK=2 /UG=Rn.49941 /UG_TITLE=ESTs, Weakly similar to UBP5 MOUSE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5 (M.musculus) BE120581 Ubiquitin specific protease 13 (isopeptidase T-3) Usp13 310306 NM_001107665 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1381939_at BM388141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388141 /DB_XREF=gi:18188194 /DB_XREF=UI-R-DM1-cjz-p-17-0-UI.s1 /CLONE=UI-R-DM1-cjz-p-17-0-UI /FEA=EST /CNT=2 /TID=Rn.27035.1 /TIER=ConsEnd /STK=2 /UG=Rn.27035 /UG_TITLE=ESTs, Weakly similar to TRFE RAT SEROTRANSFERRIN PRECURSOR (R.norvegicus) BM388141 similar to RIKEN cDNA 1300017J02 RGD1310507 315963 NM_001047891 0006826 // iron ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded 0005576 // extracellular region // inferred from electronic annotation 0004857 // enzyme inhibitor activity // not recorded /// 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0008199 // ferric iron binding // inferred from electronic annotation 1381940_at AW527798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527798 /DB_XREF=gi:7170177 /DB_XREF=UI-R-BT1-ajy-h-05-0-UI.s1 /CLONE=UI-R-BT1-ajy-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.28619.1 /TIER=ConsEnd /STK=2 /UG=Rn.28619 /UG_TITLE=ESTs AW527798 1381941_at BE112718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112718 /DB_XREF=gi:8504823 /DB_XREF=UI-R-BJ1-avo-a-07-0-UI.s1 /CLONE=UI-R-BJ1-avo-a-07-0-UI /FEA=EST /CNT=2 /TID=Rn.48892.1 /TIER=ConsEnd /STK=2 /UG=Rn.48892 /UG_TITLE=ESTs, Weakly similar to T00381 KIAA0633 protein (H.sapiens) BE112718 cordon-bleu homolog (mouse) Cobl 305497 NM_001107236 0001843 // neural tube closure // not recorded 0005515 // protein binding // not recorded 1381942_at AA963505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963505 /DB_XREF=gi:4278408 /DB_XREF=UI-R-E1-gi-g-03-0-UI.s1 /CLONE=UI-R-E1-gi-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.11570.1 /TIER=ConsEnd /STK=2 /UG=Rn.11570 /UG_TITLE=ESTs AA963505 hypermethylated in cancer 1 Hic1 303310 NM_001107021 0005515 // protein binding // not recorded 1381943_at BE112096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112096 /DB_XREF=gi:8504201 /DB_XREF=UI-R-BJ1-avk-f-03-0-UI.s1 /CLONE=UI-R-BJ1-avk-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.41048.1 /TIER=ConsEnd /STK=2 /UG=Rn.41048 /UG_TITLE=ESTs BE112096 Cysteine-rich hydrophobic domain 2 Chic2 83835 NM_001105736 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005798 // Golgi-associated vesicle // inferred from electronic annotation /// 0005798 // Golgi-associated vesicle // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1381944_at BF387066 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387066 /DB_XREF=gi:11371890 /DB_XREF=UI-R-CA1-bbp-g-12-0-UI.s1 /CLONE=UI-R-CA1-bbp-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.57054.1 /TIER=ConsEnd /STK=2 /UG=Rn.57054 /UG_TITLE=ESTs BF387066 1381945_at AI412432 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412432 /DB_XREF=gi:4255936 /DB_XREF=EST240731 /CLONE=RBRDO79 /FEA=EST /CNT=2 /TID=Rn.44056.1 /TIER=ConsEnd /STK=2 /UG=Rn.44056 /UG_TITLE=ESTs AI412432 1381946_at AI535089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535089 /DB_XREF=gi:4449224 /DB_XREF=UI-R-C3-sp-e-02-0-UI.s1 /CLONE=UI-R-C3-sp-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.51978.1 /TIER=ConsEnd /STK=2 /UG=Rn.51978 /UG_TITLE=ESTs AI535089 1381947_at AI169006 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169006 /DB_XREF=gi:3705314 /DB_XREF=EST214834 /CLONE=RKIBL77 /FEA=EST /CNT=2 /TID=Rn.43872.1 /TIER=ConsEnd /STK=2 /UG=Rn.43872 /UG_TITLE=ESTs AI169006 RGD1560210 RGD1560210 295622 XM_238267 1381948_at AI547876 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547876 /DB_XREF=gi:4465364 /DB_XREF=UI-R-C3-so-a-06-0-UI.s1 /CLONE=UI-R-C3-so-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.43478.1 /TIER=ConsEnd /STK=2 /UG=Rn.43478 /UG_TITLE=ESTs AI547876 1381949_at BE095549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095549 /DB_XREF=gi:8486480 /DB_XREF=UI-R-BU0-apa-h-06-0-UI.s1 /CLONE=UI-R-BU0-apa-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.62499.1 /TIER=ConsEnd /STK=2 /UG=Rn.62499 /UG_TITLE=ESTs, Highly similar to I48719 protein kinase C (M.musculus) BE095549 Protein kinase D1 Prkd1 85421 XM_001078506 /// XM_002726738 /// XM_002729648 /// XM_234108 0006468 // protein phosphorylation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1381950_at AI044440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044440 /DB_XREF=gi:3290791 /DB_XREF=UI-R-C1-js-f-04-0-UI.s1 /CLONE=UI-R-C1-js-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.21715.1 /TIER=ConsEnd /STK=2 /UG=Rn.21715 /UG_TITLE=ESTs AI044440 1381951_at BF408414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408414 /DB_XREF=gi:11396389 /DB_XREF=UI-R-BJ2-brc-e-02-0-UI.s1 /CLONE=UI-R-BJ2-brc-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.14722.1 /TIER=ConsEnd /STK=2 /UG=Rn.14722 /UG_TITLE=ESTs BF408414 1381952_at AW527958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527958 /DB_XREF=gi:7170372 /DB_XREF=UI-R-BT1-akg-b-02-0-UI.s1 /CLONE=UI-R-BT1-akg-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.49116.1 /TIER=ConsEnd /STK=2 /UG=Rn.49116 /UG_TITLE=ESTs, Weakly similar to A57542 p96 protein - mouse (M.musculus) AW527958 Disabled homolog 1 (Drosophila) Dab1 266729 NM_153621 0001764 // neuron migration // inferred from direct assay /// 0001764 // neuron migration // not recorded /// 0007162 // negative regulation of cell adhesion // not recorded /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0007494 // midgut development // inferred from expression pattern /// 0021589 // cerebellum structural organization // not recorded /// 0021795 // cerebral cortex cell migration // not recorded /// 0021799 // cerebral cortex radially oriented cell migration // inferred from mutant phenotype /// 0021799 // cerebral cortex radially oriented cell migration // not recorded /// 0021813 // cell-cell adhesion involved in neuronal-glial interactions involved in cerebral cortex radial glia guided migration // not recorded /// 0021942 // radial glia guided migration of Purkinje cell // not recorded /// 0021987 // cerebral cortex development // inferred from expression pattern /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0045860 // positive regulation of protein kinase activity // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005903 // brush border // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045177 // apical part of cell // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction 1381953_at AI111705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111705 /DB_XREF=gi:3511654 /DB_XREF=UI-R-Y0-mf-e-03-0-UI.s1 /CLONE=UI-R-Y0-mf-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.54361.1 /TIER=ConsEnd /STK=2 /UG=Rn.54361 /UG_TITLE=ESTs AI111705 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 St6galnac2 303692 NM_001031652 0006486 // protein glycosylation // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation 0008373 // sialyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1381954_at AI011441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011441 /DB_XREF=gi:3225273 /DB_XREF=EST205892 /CLONE=ROVAU96 /FEA=EST /CNT=2 /TID=Rn.40287.1 /TIER=ConsEnd /STK=2 /UG=Rn.40287 /UG_TITLE=ESTs, Highly similar to toll-associated serine protease (Mus musculus) (M.musculus) AI011441 HtrA serine peptidase 3 Htra3 360959 XM_001058037 /// XM_341237 0001558 // regulation of cell growth // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation 1381955_at AA957487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957487 /DB_XREF=gi:4277377 /DB_XREF=UI-R-E1-fw-d-07-0-UI.s1 /CLONE=UI-R-E1-fw-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.23162.1 /TIER=ConsEnd /STK=2 /UG=Rn.23162 /UG_TITLE=ESTs AA957487 family with sequence similarity 183, member B Fam183b 287346 XM_002724609 /// XM_002727713 /// XM_213312 1381956_at AI603497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI603497 /DB_XREF=gi:4612658 /DB_XREF=UI-R-AF0-xz-b-02-0-UI.s1 /CLONE=UI-R-AF0-xz-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.40514.1 /TIER=ConsEnd /STK=2 /UG=Rn.40514 /UG_TITLE=ESTs AI603497 1381957_at AW529176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529176 /DB_XREF=gi:7171590 /DB_XREF=UI-R-BO1-ajp-h-04-0-UI.s1 /CLONE=UI-R-BO1-ajp-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.47114.1 /TIER=ConsEnd /STK=2 /UG=Rn.47114 /UG_TITLE=ESTs AW529176 1381958_at BE107587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107587 /DB_XREF=gi:8499692 /DB_XREF=UI-R-CA0-awv-d-10-0-UI.s1 /CLONE=UI-R-CA0-awv-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.51216.1 /TIER=ConsEnd /STK=2 /UG=Rn.51216 /UG_TITLE=ESTs, Weakly similar to ECT2 MOUSE ECT2 PROTEIN (M.musculus) BE107587 topoisomerase (DNA) II binding protein 1 Topbp1 315969 XM_001072207 /// XM_236578 0006974 // response to DNA damage stimulus // not recorded /// 0010212 // response to ionizing radiation // not recorded 0000794 // condensed nuclear chromosome // not recorded /// 0001673 // male germ cell nucleus // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0016605 // PML body // not recorded 0005515 // protein binding // not recorded 1381959_at BF386978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386978 /DB_XREF=gi:11371802 /DB_XREF=UI-R-CA1-bbj-h-01-0-UI.s1 /CLONE=UI-R-CA1-bbj-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.60167.1 /TIER=ConsEnd /STK=2 /UG=Rn.60167 /UG_TITLE=ESTs BF386978 1381960_at BI288014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288014 /DB_XREF=gi:14944202 /DB_XREF=UI-R-BT1-bni-g-02-0-UI.s2 /CLONE=UI-R-BT1-bni-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.76029.1 /TIER=ConsEnd /STK=2 /UG=Rn.76029 /UG_TITLE=ESTs BI288014 ropporin 1-like Ropn1l 685646 NM_001191086 /// XM_001064653 /// XM_002725923 0007165 // signal transduction // inferred from electronic annotation 0008603 // cAMP-dependent protein kinase regulator activity // inferred from electronic annotation 1381961_at AI502554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502554 /DB_XREF=gi:4400405 /DB_XREF=UI-R-C2-nh-b-12-0-UI.s1 /CLONE=UI-R-C2-nh-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.17630.3 /TIER=ConsEnd /STK=2 /UG=Rn.17630 /UG_TITLE=ESTs, Weakly similar to T08680 hypothetical protein DKFZp564P0622.1 (H.sapiens) AI502554 Antagonist of mitotic exit network 1 homolog (S. cerevisiae) Amn1 302032 NM_001008333 0005515 // protein binding // inferred from electronic annotation 1381962_at AI548146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548146 /DB_XREF=gi:4465634 /DB_XREF=UI-R-C3-sm-h-02-0-UI.s1 /CLONE=UI-R-C3-sm-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.38164.1 /TIER=ConsEnd /STK=2 /UG=Rn.38164 /UG_TITLE=ESTs AI548146 1381963_at AI013692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013692 /DB_XREF=gi:3227748 /DB_XREF=EST208367 /CLONE=RSPBR70 /FEA=EST /CNT=2 /TID=Rn.47809.1 /TIER=ConsEnd /STK=2 /UG=Rn.47809 /UG_TITLE=ESTs, Weakly similar to ATS1_RAT ADAM-TS 1 PRECURSOR (A DISINTEGRIN AND METALLOPROTEINASE WITH THROMBOSPONDIN MOTIFS 1) (ADAMTS-1) (ADAM-TS1) (R.norvegicus) AI013692 similar to RIKEN cDNA B230114P05 RGD1566296 315728 XM_001075236 /// XM_236312 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation 1381964_at BF410803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410803 /DB_XREF=gi:11398778 /DB_XREF=UI-R-CN0-bml-b-10-0-UI.s1 /CLONE=UI-R-CN0-bml-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.50705.1 /TIER=ConsEnd /STK=2 /UG=Rn.50705 /UG_TITLE=ESTs BF410803 similar to von Ebner minor salivary gland protein RGD1563047 499926 NM_001077680 0005576 // extracellular region // inferred from electronic annotation 0008289 // lipid binding // inferred from electronic annotation 1381965_at AI136271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136271 /DB_XREF=gi:3637048 /DB_XREF=UI-R-C2p-oa-b-04-0-UI.s1 /CLONE=UI-R-C2p-oa-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.23668.1 /TIER=ConsEnd /STK=2 /UG=Rn.23668 /UG_TITLE=ESTs AI136271 1381966_at AI235085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235085 /DB_XREF=gi:3828591 /DB_XREF=EST231647 /CLONE=ROVCN23 /FEA=EST /CNT=2 /TID=Rn.22598.2 /TIER=ConsEnd /STK=2 /UG=Rn.22598 /UG_TITLE=ESTs, Weakly similar to T00022 B120 protein (H.sapiens) AI235085 AT rich interactive domain 1B (Swi1 like) Arid1b 282546 NM_172157 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0016514 // SWI/SNF complex // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1381967_at BE114972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114972 /DB_XREF=gi:8507077 /DB_XREF=UI-R-BJ1-awr-g-01-0-UI.s1 /CLONE=UI-R-BJ1-awr-g-01-0-UI /FEA=EST /CNT=24 /TID=Rn.8555.2 /TIER=ConsEnd /STK=1 /UG=Rn.8555 /UG_TITLE=ESTs, Highly similar to I55595 splicing factor (H.sapiens) BE114972 RNA binding motif protein 39 Rbm39 362251 NM_001013207 0006397 // mRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1381968_at AI029175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029175 /DB_XREF=gi:4296739 /DB_XREF=UI-R-C0-iv-f-09-0-UI.s1 /CLONE=UI-R-C0-iv-f-09-0-UI /FEA=EST /CNT=16 /TID=Rn.3532.1 /TIER=ConsEnd /STK=1 /UG=Rn.3532 /UG_TITLE=ESTs AI029175 cellular repressor of E1A-stimulated genes 1 Creg1 289185 NM_001105966 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0010181 // FMN binding // inferred from electronic annotation 1381969_at AA998296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998296 /DB_XREF=gi:4288873 /DB_XREF=UI-R-C0-hz-f-11-0-UI.s1 /CLONE=UI-R-C0-hz-f-11-0-UI /FEA=EST /CNT=14 /TID=Rn.24975.1 /TIER=ConsEnd /STK=1 /UG=Rn.24975 /UG_TITLE=ESTs AA998296 1381970_at AA945865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945865 /DB_XREF=gi:4132628 /DB_XREF=EST201364 /CLONE=RLUAW24 /FEA=EST /CNT=15 /TID=Rn.2370.2 /TIER=ConsEnd /STK=1 /UG=Rn.2370 /UG_TITLE=ESTs AA945865 LSM14A, SCD6 homolog A (S. cerevisiae) Lsm14a 361554 NM_001127552 0033962 // cytoplasmic mRNA processing body assembly // not recorded 0000932 // cytoplasmic mRNA processing body // not recorded /// 0005737 // cytoplasm // not recorded /// 0010494 // stress granule // not recorded 1381971_at AW528157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528157 /DB_XREF=gi:7170571 /DB_XREF=UI-R-BO1-ajn-d-06-0-UI.s1 /CLONE=UI-R-BO1-ajn-d-06-0-UI /FEA=EST /CNT=15 /TID=Rn.22446.1 /TIER=ConsEnd /STK=1 /UG=Rn.22446 /UG_TITLE=ESTs, Highly similar to JC4238 HMG-box transcription factor - mouse (M.musculus) AW528157 SRY (sex determining region Y)-box 18 Sox18 311723 NM_001024781 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001942 // hair follicle development // inferred from electronic annotation /// 0001942 // hair follicle development // not recorded /// 0001944 // vasculature development // not recorded /// 0001944 // vasculature development // inferred from electronic annotation /// 0001945 // lymph vessel development // not recorded /// 0001945 // lymph vessel development // inferred from electronic annotation /// 0001946 // lymphangiogenesis // inferred from electronic annotation /// 0001946 // lymphangiogenesis // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0022405 // hair cycle process // not recorded /// 0022405 // hair cycle process // inferred from electronic annotation /// 0035050 // embryonic heart tube development // inferred from electronic annotation /// 0035050 // embryonic heart tube development // not recorded /// 0043534 // blood vessel endothelial cell migration // inferred from electronic annotation /// 0043534 // blood vessel endothelial cell migration // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0060214 // endocardium formation // inferred from electronic annotation /// 0060214 // endocardium formation // not recorded /// 0060836 // lymphatic endothelial cell differentiation // inferred from electronic annotation /// 0060836 // lymphatic endothelial cell differentiation // not recorded /// 0060956 // endocardial cell differentiation // inferred from electronic annotation /// 0060956 // endocardial cell differentiation // not recorded /// 0061028 // establishment of endothelial barrier // inferred from electronic annotation /// 0061028 // establishment of endothelial barrier // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1381972_at BG673626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG673626 /DB_XREF=gi:13895725 /DB_XREF=DRNABE01 /CLONE=DRNABE01 /FEA=EST /CNT=15 /TID=Rn.19817.1 /TIER=ConsEnd /STK=1 /UG=Rn.19817 /UG_TITLE=ESTs, Weakly similar to R08B4.3.p (Caenorhabditis elegans) (C.elegans) BG673626 cereblon Crbn 297498 NM_001015003 0006508 // proteolysis // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from sequence or structural similarity /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019005 // SCF ubiquitin ligase complex // inferred from electronic annotation /// 0031464 // Cul4A-RING ubiquitin ligase complex // not recorded /// 0031464 // Cul4A-RING ubiquitin ligase complex // inferred from sequence or structural similarity 0004176 // ATP-dependent peptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1381973_at AW530647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530647 /DB_XREF=gi:7173061 /DB_XREF=UI-R-C4-ala-f-12-0-UI.s1 /CLONE=UI-R-C4-ala-f-12-0-UI /FEA=EST /CNT=14 /TID=Rn.13137.1 /TIER=ConsEnd /STK=1 /UG=Rn.13137 /UG_TITLE=ESTs AW530647 solute carrier family 25, member 30 Slc25a30 361074 NM_001013187 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1381974_at AI101499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101499 /DB_XREF=gi:3706390 /DB_XREF=EST210788 /CLONE=RBRBR03 /FEA=EST /CNT=13 /TID=Rn.12337.1 /TIER=ConsEnd /STK=1 /UG=Rn.12337 /UG_TITLE=ESTs AI101499 1381975_at BG371767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371767 /DB_XREF=gi:13268304 /DB_XREF=UI-R-CV0-bri-a-07-0-UI.s1 /CLONE=UI-R-CV0-bri-a-07-0-UI /FEA=EST /CNT=13 /TID=Rn.24883.1 /TIER=ConsEnd /STK=1 /UG=Rn.24883 /UG_TITLE=ESTs BG371767 similar to kIAA0367 RGD1311350 293823 XM_002725748 /// XM_002728837 0006915 // apoptosis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 1381976_at BE103004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103004 /DB_XREF=gi:8495103 /DB_XREF=UI-R-BT1-aqr-b-08-0-UI.s1 /CLONE=UI-R-BT1-aqr-b-08-0-UI /FEA=EST /CNT=19 /TID=Rn.47694.1 /TIER=ConsEnd /STK=1 /UG=Rn.47694 /UG_TITLE=ESTs, Weakly similar to T00066 hypothetical protein KIAA0449 (H.sapiens) BE103004 0007018 // microtubule-based movement // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1381977_at BI299008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299008 /DB_XREF=gi:14975288 /DB_XREF=UI-R-CV2-chq-b-04-0-UI.s1 /CLONE=UI-R-CV2-chq-b-04-0-UI /FEA=EST /CNT=16 /TID=Rn.22801.1 /TIER=ConsEnd /STK=1 /UG=Rn.22801 /UG_TITLE=ESTs BI299008 hypothetical protein LOC681433 LOC681433 681433 XM_002725484 1381978_a_at AI071270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071270 /DB_XREF=gi:3397485 /DB_XREF=UI-R-C1-ko-a-03-0-UI.s2 /CLONE=UI-R-C1-ko-a-03-0-UI /FEA=EST /CNT=1 /TID=Rn.11710.2 /TIER=ConsEnd /STK=1 /UG=Rn.11710 /UG_TITLE=ESTs, Moderately similar to T08715 hypothetical protein DKFZp566I1024.1 (H.sapiens) AI071270 sulfatase modifying factor 2 Sumf2 360800 NM_001025125 0005783 // endoplasmic reticulum // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1381979_at AA964066 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964066 /DB_XREF=gi:4278942 /DB_XREF=UI-R-C0-gw-b-09-0-UI.s1 /CLONE=UI-R-C0-gw-b-09-0-UI /FEA=EST /CNT=13 /TID=Rn.11710.1 /TIER=ConsEnd /STK=1 /UG=Rn.11710 /UG_TITLE=ESTs, Moderately similar to T08715 hypothetical protein DKFZp566I1024.1 (H.sapiens) AA964066 sulfatase modifying factor 2 Sumf2 360800 NM_001025125 0005783 // endoplasmic reticulum // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1381980_at BI278862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278862 /DB_XREF=gi:14926119 /DB_XREF=UI-R-CX0-bwx-g-09-0-UI.s1 /CLONE=UI-R-CX0-bwx-g-09-0-UI /FEA=EST /CNT=12 /TID=Rn.22719.1 /TIER=ConsEnd /STK=1 /UG=Rn.22719 /UG_TITLE=ESTs BI278862 torsin A interacting protein 2 Tor1aip2 304881 NM_001165896 /// NM_001165897 /// NM_199100 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1381981_at BE101088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101088 /DB_XREF=gi:8492995 /DB_XREF=UI-R-BJ1-auh-a-04-0-UI.s1 /CLONE=UI-R-BJ1-auh-a-04-0-UI /FEA=EST /CNT=12 /TID=Rn.17233.1 /TIER=ConsEnd /STK=1 /UG=Rn.17233 /UG_TITLE=ESTs BE101088 1381982_at BF403568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403568 /DB_XREF=gi:11391543 /DB_XREF=UI-R-CA1-bjd-d-04-0-UI.s1 /CLONE=UI-R-CA1-bjd-d-04-0-UI /FEA=EST /CNT=12 /TID=Rn.23051.1 /TIER=ConsEnd /STK=1 /UG=Rn.23051 /UG_TITLE=ESTs, Weakly similar to UAP1_HUMAN UDP-N-ACETYLHEXOSAMINE PYROPHOSPHORYLASE (H.sapiens) BF403568 UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 Uap1l1 296560 NM_001134516 0008152 // metabolic process // inferred from electronic annotation 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1381983_at AI454019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454019 /DB_XREF=gi:4290794 /DB_XREF=UI-R-BT0-qa-b-12-0-UI.s1 /CLONE=UI-R-BT0-qa-b-12-0-UI /FEA=EST /CNT=12 /TID=Rn.22843.2 /TIER=ConsEnd /STK=1 /UG=Rn.22843 /UG_TITLE=ESTs AI454019 DENN/MADD domain containing 1A Dennd1a 311913 NM_001191747 /// XM_001054730 /// XM_231184 0048488 // synaptic vesicle endocytosis // not recorded 0030136 // clathrin-coated vesicle // not recorded /// 0030425 // dendrite // not recorded /// 0030665 // clathrin coated vesicle membrane // not recorded /// 0043025 // neuronal cell body // not recorded /// 0045202 // synapse // not recorded 0005515 // protein binding // not recorded /// 0017124 // SH3 domain binding // not recorded 1381984_at AI600142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600142 /DB_XREF=gi:4609190 /DB_XREF=EST251845 /CLONE=REMDU54 /FEA=EST /CNT=11 /TID=Rn.24648.1 /TIER=ConsEnd /STK=1 /UG=Rn.24648 /UG_TITLE=ESTs AI600142 1381985_at AI412335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412335 /DB_XREF=gi:4255839 /DB_XREF=EST240633 /CLONE=RBRDU59 /FEA=EST /CNT=11 /TID=Rn.16149.1 /TIER=ConsEnd /STK=1 /UG=Rn.16149 /UG_TITLE=ESTs AI412335 1381986_at BE112452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112452 /DB_XREF=gi:8504557 /DB_XREF=UI-R-BJ1-avm-h-02-0-UI.s1 /CLONE=UI-R-BJ1-avm-h-02-0-UI /FEA=EST /CNT=11 /TID=Rn.7789.1 /TIER=ConsEnd /STK=1 /UG=Rn.7789 /UG_TITLE=ESTs BE112452 Similar to neuron navigator 1 LOC685707 685707 XR_006273 /// XR_085598 1381987_at AI175803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175803 /DB_XREF=gi:3726441 /DB_XREF=EST219373 /CLONE=ROVBF63 /FEA=EST /CNT=11 /TID=Rn.12978.1 /TIER=ConsEnd /STK=1 /UG=Rn.12978 /UG_TITLE=ESTs AI175803 1381988_at AI029833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029833 /DB_XREF=gi:4301295 /DB_XREF=UI-R-C0-jn-g-02-0-UI.s1 /CLONE=UI-R-C0-jn-g-02-0-UI /FEA=EST /CNT=11 /TID=Rn.23356.1 /TIER=ConsEnd /STK=1 /UG=Rn.23356 /UG_TITLE=ESTs AI029833 1381989_at BI280114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280114 /DB_XREF=gi:14928591 /DB_XREF=UI-R-DD0-cbc-g-10-0-UI.s1 /CLONE=UI-R-DD0-cbc-g-10-0-UI /FEA=EST /CNT=11 /TID=Rn.17408.1 /TIER=ConsEnd /STK=1 /UG=Rn.17408 /UG_TITLE=ESTs BI280114 1381990_at AA963979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963979 /DB_XREF=gi:4278855 /DB_XREF=UI-R-C0-gs-d-04-0-UI.s1 /CLONE=UI-R-C0-gs-d-04-0-UI /FEA=EST /CNT=10 /TID=Rn.11720.1 /TIER=ConsEnd /STK=1 /UG=Rn.11720 /UG_TITLE=ESTs AA963979 1381991_at AI177144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177144 /DB_XREF=gi:3727782 /DB_XREF=EST220751 /CLONE=ROVCB41 /FEA=EST /CNT=10 /TID=Rn.19017.1 /TIER=ConsEnd /STK=1 /UG=Rn.19017 /UG_TITLE=ESTs AI177144 coiled-coil domain containing 91 Ccdc91 312863 NM_001014061 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1381992_at AI145378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145378 /DB_XREF=gi:3667171 /DB_XREF=UI-R-BT0-qe-c-06-0-UI.s1 /CLONE=UI-R-BT0-qe-c-06-0-UI /FEA=EST /CNT=10 /TID=Rn.28449.1 /TIER=ConsEnd /STK=1 /UG=Rn.28449 /UG_TITLE=ESTs AI145378 kaptin (actin binding protein) Kptn 308107 NM_001107457 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1381993_at BI293548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293548 /DB_XREF=gi:14955145 /DB_XREF=UI-R-DK0-cdr-g-06-0-UI.s1 /CLONE=UI-R-DK0-cdr-g-06-0-UI /FEA=EST /CNT=10 /TID=Rn.22290.1 /TIER=ConsEnd /STK=1 /UG=Rn.22290 /UG_TITLE=ESTs, Weakly similar to S70484 RS43 protein - rat (fragment) (R.norvegicus) BI293548 chloride intracellular channel 2 Clic2 294141 NM_001009651 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005247 // voltage-gated chloride channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation 1381994_at BM385862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385862 /DB_XREF=gi:18185915 /DB_XREF=UI-R-DM1-cke-j-19-0-UI.s1 /CLONE=UI-R-DM1-cke-j-19-0-UI /FEA=EST /CNT=10 /TID=Rn.8315.1 /TIER=ConsEnd /STK=1 /UG=Rn.8315 /UG_TITLE=ESTs BM385862 1381995_at AW530502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530502 /DB_XREF=gi:7172916 /DB_XREF=UI-R-C4-akx-h-01-0-UI.s1 /CLONE=UI-R-C4-akx-h-01-0-UI /FEA=EST /CNT=25 /TID=Rn.23878.1 /TIER=ConsEnd /STK=1 /UG=Rn.23878 /UG_TITLE=ESTs, Moderately similar to T19347 hypothetical protein C17D12.2 - Caenorhabditis elegans (C.elegans) AW530502 bruno-like 4, RNA binding protein (Drosophila) Brunol4 307540 NM_001107400 0000381 // regulation of alternative nuclear mRNA splicing, via spliceosome // not recorded /// 0006376 // mRNA splice site selection // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded 1381996_at BG666712 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666712 /DB_XREF=gi:13888634 /DB_XREF=DRABTE07 /CLONE=DRABTE07 /FEA=EST /CNT=20 /TID=Rn.32508.1 /TIER=ConsEnd /STK=1 /UG=Rn.32508 /UG_TITLE=ESTs BG666712 1381997_at BM386227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386227 /DB_XREF=gi:18186280 /DB_XREF=UI-R-CN1-cjf-e-22-0-UI.s1 /CLONE=UI-R-CN1-cjf-e-22-0-UI /FEA=EST /CNT=15 /TID=Rn.24299.1 /TIER=ConsEnd /STK=1 /UG=Rn.24299 /UG_TITLE=ESTs, Weakly similar to 1917150A collagen:SUBUNIT=alpha1:ISOTYPE=VIII (R.norvegicus) BM386227 adiponectin, C1Q and collagen domain containing Adipoq 246253 NM_144744 0001666 // response to hypoxia // inferred from expression pattern /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0009744 // response to sucrose stimulus // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from electronic annotation /// 0009749 // response to glucose stimulus // not recorded /// 0009967 // positive regulation of signal transduction // inferred from electronic annotation /// 0009967 // positive regulation of signal transduction // not recorded /// 0010739 // positive regulation of protein kinase A signaling cascade // inferred from electronic annotation /// 0010739 // positive regulation of protein kinase A signaling cascade // not recorded /// 0010745 // negative regulation of macrophage derived foam cell differentiation // inferred from electronic annotation /// 0010745 // negative regulation of macrophage derived foam cell differentiation // not recorded /// 0010804 // negative regulation of tumor necrosis factor-mediated signaling pathway // inferred from electronic annotation /// 0010804 // negative regulation of tumor necrosis factor-mediated signaling pathway // not recorded /// 0010875 // positive regulation of cholesterol efflux // inferred from electronic annotation /// 0010875 // positive regulation of cholesterol efflux // not recorded /// 0019395 // fatty acid oxidation // not recorded /// 0019395 // fatty acid oxidation // non-traceable author statement /// 0019395 // fatty acid oxidation // inferred from electronic annotation /// 0030853 // negative regulation of granulocyte differentiation // inferred from electronic annotation /// 0030853 // negative regulation of granulocyte differentiation // not recorded /// 0032270 // positive regulation of cellular protein metabolic process // inferred from electronic annotation /// 0032270 // positive regulation of cellular protein metabolic process // not recorded /// 0032720 // negative regulation of tumor necrosis factor production // inferred from electronic annotation /// 0032720 // negative regulation of tumor necrosis factor production // not recorded /// 0033034 // positive regulation of myeloid cell apoptosis // inferred from electronic annotation /// 0033034 // positive regulation of myeloid cell apoptosis // not recorded /// 0033211 // adiponectin-mediated signaling pathway // inferred from direct assay /// 0034115 // negative regulation of heterotypic cell-cell adhesion // inferred from electronic annotation /// 0034115 // negative regulation of heterotypic cell-cell adhesion // not recorded /// 0034383 // low-density lipoprotein particle clearance // inferred from electronic annotation /// 0034383 // low-density lipoprotein particle clearance // not recorded /// 0034612 // response to tumor necrosis factor // inferred from electronic annotation /// 0034612 // response to tumor necrosis factor // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042593 // glucose homeostasis // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // not recorded /// 0045650 // negative regulation of macrophage differentiation // inferred from electronic annotation /// 0045650 // negative regulation of macrophage differentiation // not recorded /// 0045715 // negative regulation of low-density lipoprotein receptor biosynthetic process // inferred from electronic annotation /// 0045715 // negative regulation of low-density lipoprotein receptor biosynthetic process // not recorded /// 0045721 // negative regulation of gluconeogenesis // inferred from electronic annotation /// 0045721 // negative regulation of gluconeogenesis // not recorded /// 0045777 // positive regulation of blood pressure // inferred from direct assay /// 0045923 // positive regulation of fatty acid metabolic process // inferred from electronic annotation /// 0045923 // positive regulation of fatty acid metabolic process // not recorded /// 0046326 // positive regulation of glucose import // inferred from electronic annotation /// 0046326 // positive regulation of glucose import // not recorded /// 0046888 // negative regulation of hormone secretion // inferred from direct assay /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050765 // negative regulation of phagocytosis // inferred from electronic annotation /// 0050765 // negative regulation of phagocytosis // not recorded /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051899 // membrane depolarization // inferred from direct assay /// 0060081 // membrane hyperpolarization // inferred from direct assay 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005179 // hormone activity // inferred from direct assay /// 0005179 // hormone activity // not recorded /// 0005179 // hormone activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043499 // eukaryotic cell surface binding // inferred from electronic annotation /// 0043499 // eukaryotic cell surface binding // not recorded 1381998_at AW519820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW519820 /DB_XREF=gi:7162198 /DB_XREF=EST00001 /CLONE=HHC189 /FEA=EST /CNT=14 /TID=Rn.19989.1 /TIER=ConsEnd /STK=1 /UG=Rn.19989 /UG_TITLE=ESTs AW519820 Zinc finger protein 148 Zfp148 58820 NM_031615 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006350 // transcription // inferred from electronic annotation /// 0006461 // protein complex assembly // inferred from mutant phenotype /// 0007276 // gamete generation // inferred from electronic annotation /// 0007276 // gamete generation // not recorded /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from direct assay /// 0016564 // transcription repressor activity // inferred from direct assay /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1381999_at BE096370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096370 /DB_XREF=gi:8487301 /DB_XREF=UI-R-BU0-apf-c-08-0-UI.s1 /CLONE=UI-R-BU0-apf-c-08-0-UI /FEA=EST /CNT=11 /TID=Rn.25526.1 /TIER=ConsEnd /STK=1 /UG=Rn.25526 /UG_TITLE=ESTs, Moderately similar to T14744 hypothetical protein DKFZp586F0424.1 (H.sapiens) BE096370 calmodulin regulated spectrin-associated protein 1 Camsap1 296580 NM_001168549 1382000_at AW520897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520897 /DB_XREF=gi:7163275 /DB_XREF=UI-R-BJ0p-age-g-01-0-UI.s1 /CLONE=UI-R-BJ0p-age-g-01-0-UI /FEA=EST /CNT=11 /TID=Rn.12096.1 /TIER=ConsEnd /STK=1 /UG=Rn.12096 /UG_TITLE=ESTs AW520897 Max dimerization protein 4 Mxd4 360961 NM_001108364 0016481 // negative regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1382001_at AI227612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227612 /DB_XREF=gi:3811396 /DB_XREF=EST216480 /CLONE=RLUCQ56 /FEA=EST /CNT=11 /TID=Rn.17835.1 /TIER=ConsEnd /STK=1 /UG=Rn.17835 /UG_TITLE=ESTs AI227612 1382002_at AI230621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230621 /DB_XREF=gi:3814508 /DB_XREF=EST227316 /CLONE=REMCZ13 /FEA=EST /CNT=11 /TID=Rn.16909.1 /TIER=ConsEnd /STK=1 /UG=Rn.16909 /UG_TITLE=ESTs AI230621 1382003_at AI704067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI704067 /DB_XREF=gi:4991972 /DB_XREF=UI-R-AC1-xq-h-10-0-UI.s1 /CLONE=UI-R-AC1-xq-h-10-0-UI /FEA=EST /CNT=10 /TID=Rn.23260.1 /TIER=ConsEnd /STK=1 /UG=Rn.23260 /UG_TITLE=ESTs, Weakly similar to MOT2 RAT MONOCARBOXYLATE TRANSPORTER 2 (R.norvegicus) AI704067 solute carrier family 16, member 13 (monocarboxylic acid transporter 13) Slc16a13 287451 NM_001005530 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0015293 // symporter activity // inferred from electronic annotation 1382004_at AI175827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175827 /DB_XREF=gi:3726465 /DB_XREF=EST219398 /CLONE=ROVBG02 /FEA=EST /CNT=10 /TID=Rn.21256.1 /TIER=ConsEnd /STK=1 /UG=Rn.21256 /UG_TITLE=ESTs AI175827 1382005_at BI280285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280285 /DB_XREF=gi:14928916 /DB_XREF=UI-R-DE0-cag-b-06-0-UI.s1 /CLONE=UI-R-DE0-cag-b-06-0-UI /FEA=EST /CNT=9 /TID=Rn.3224.1 /TIER=ConsEnd /STK=1 /UG=Rn.3224 /UG_TITLE=ESTs BI280285 1382006_at AA996892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996892 /DB_XREF=gi:4280656 /DB_XREF=UI-R-C0-hh-d-01-0-UI.s1 /CLONE=UI-R-C0-hh-d-01-0-UI /FEA=EST /CNT=9 /TID=Rn.3815.1 /TIER=ConsEnd /STK=1 /UG=Rn.3815 /UG_TITLE=ESTs AA996892 SNAP-associated protein Snapap 295217 NM_001025648 /// NM_001170576 0006887 // exocytosis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation 1382007_at AA964563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964563 /DB_XREF=gi:4279437 /DB_XREF=UI-R-E1-go-c-03-0-UI.s1 /CLONE=UI-R-E1-go-c-03-0-UI /FEA=EST /CNT=9 /TID=Rn.8928.1 /TIER=ConsEnd /STK=1 /UG=Rn.8928 /UG_TITLE=ESTs, Weakly similar to T16249 hypothetical protein F35A5.8 - Caenorhabditis elegans (C.elegans) AA964563 SH3-domain GRB2-like endophilin B1 Sh3glb1 292156 NM_001011929 0001844 // protein insertion into mitochondrial membrane involved in induction of apoptosis // not recorded /// 0006654 // phosphatidic acid biosynthetic process // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // not recorded /// 0046847 // filopodium assembly // inferred from electronic annotation /// 0051084 // 'de novo' posttranslational protein folding // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0043234 // protein complex // not recorded 0005504 // fatty acid binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008093 // cytoskeletal adaptor activity // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0042171 // lysophosphatidic acid acyltransferase activity // not recorded /// 0042803 // protein homodimerization activity // not recorded 1382008_at AI044348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044348 /DB_XREF=gi:3291251 /DB_XREF=UI-R-C0-is-c-08-0-UI.s1 /CLONE=UI-R-C0-is-c-08-0-UI /FEA=EST /CNT=9 /TID=Rn.15885.1 /TIER=ConsEnd /STK=1 /UG=Rn.15885 /UG_TITLE=ESTs AI044348 renalase, FAD-dependent amine oxidase Rnls 361751 NM_001014167 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation 1382009_at AA955721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955721 /DB_XREF=gi:4238116 /DB_XREF=UI-R-E1-fc-d-03-0-UI.s1 /CLONE=UI-R-E1-fc-d-03-0-UI /FEA=EST /CNT=9 /TID=Rn.8629.1 /TIER=ConsEnd /STK=1 /UG=Rn.8629 /UG_TITLE=ESTs, Highly similar to CHD1 MOUSE CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 (M.musculus) AA955721 chromodomain helicase DNA binding protein 1 Chd1 308215 NM_001107465 0006333 // chromatin assembly or disassembly // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1382010_at AI711537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711537 /DB_XREF=gi:5001313 /DB_XREF=UI-R-AD1-zn-d-05-0-UI.s2 /CLONE=UI-R-AD1-zn-d-05-0-UI /FEA=EST /CNT=9 /TID=Rn.2425.1 /TIER=ConsEnd /STK=1 /UG=Rn.2425 /UG_TITLE=ESTs AI711537 transmembrane protein 107 Tmem107 691750 NM_001109648 1382011_at AI100797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI100797 /DB_XREF=gi:3705834 /DB_XREF=EST210086 /CLONE=RBRBA42 /FEA=EST /CNT=15 /TID=Rn.22438.1 /TIER=ConsEnd /STK=1 /UG=Rn.22438 /UG_TITLE=ESTs AI100797 1382012_at BG378734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378734 /DB_XREF=gi:13303206 /DB_XREF=UI-R-CV1-bvs-c-01-0-UI.s1 /CLONE=UI-R-CV1-bvs-c-01-0-UI /FEA=EST /CNT=14 /TID=Rn.9615.1 /TIER=ConsEnd /STK=1 /UG=Rn.9615 /UG_TITLE=ESTs, Weakly similar to T21325 hypothetical protein F25B3.6 - Caenorhabditis elegans (C.elegans) BG378734 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) Rtf1 366169 NM_001108958 0006352 // transcription initiation // inferred from electronic annotation /// 0016570 // histone modification // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382013_at AI071118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071118 /DB_XREF=gi:3397333 /DB_XREF=UI-R-C2-ms-h-12-0-UI.s1 /CLONE=UI-R-C2-ms-h-12-0-UI /FEA=EST /CNT=14 /TID=Rn.8025.1 /TIER=ConsEnd /STK=1 /UG=Rn.8025 /UG_TITLE=ESTs AI071118 family with sequence similarity 8, member A1 Fam8a1 291031 XM_001058608 /// XM_214446 1382014_at AW521951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521951 /DB_XREF=gi:7164336 /DB_XREF=UI-R-BO0-agu-g-08-0-UI.s1 /CLONE=UI-R-BO0-agu-g-08-0-UI /FEA=EST /CNT=13 /TID=Rn.1759.1 /TIER=ConsEnd /STK=1 /UG=Rn.1759 /UG_TITLE=ESTs, Weakly similar to T15100 hypothetical protein W03F8.4 - Caenorhabditis elegans (C.elegans) AW521951 Tp53rk binding protein Tprkb 297411 NM_001013926 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0019901 // protein kinase binding // not recorded 1382015_at AI172613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172613 /DB_XREF=gi:3712653 /DB_XREF=UI-R-C2p-oh-g-04-0-UI.s1 /CLONE=UI-R-C2p-oh-g-04-0-UI /FEA=EST /CNT=13 /TID=Rn.23749.1 /TIER=ConsEnd /STK=1 /UG=Rn.23749 /UG_TITLE=ESTs AI172613 1382016_at AI716661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716661 /DB_XREF=gi:5033917 /DB_XREF=UI-R-Y0-acc-g-01-0-UI.s1 /CLONE=UI-R-Y0-acc-g-01-0-UI /FEA=EST /CNT=11 /TID=Rn.54141.1 /TIER=ConsEnd /STK=1 /UG=Rn.54141 /UG_TITLE=ESTs AI716661 actin related protein 2/3 complex, subunit 5-like Arpc5l 296710 NM_001037767 0030833 // regulation of actin filament polymerization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1382017_at AI012949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012949 /DB_XREF=gi:4133711 /DB_XREF=EST207400 /CLONE=RSPBA25 /FEA=EST /CNT=11 /TID=Rn.7713.2 /TIER=ConsEnd /STK=1 /UG=Rn.7713 /UG_TITLE=ESTs AI012949 1382018_at AA999062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA999062 /DB_XREF=gi:4293753 /DB_XREF=UI-R-C0-in-g-11-0-UI.s1 /CLONE=UI-R-C0-in-g-11-0-UI /FEA=EST /CNT=10 /TID=Rn.31861.1 /TIER=ConsEnd /STK=1 /UG=Rn.31861 /UG_TITLE=ESTs, Weakly similar to T20358 hypothetical protein D2030.8 - Caenorhabditis elegans (C.elegans) AA999062 family with sequence similarity 113, member A Fam113a 296158 NM_001012348 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382019_at AA998062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998062 /DB_XREF=gi:4287249 /DB_XREF=UI-R-C0-id-c-01-0-UI.s1 /CLONE=UI-R-C0-id-c-01-0-UI /FEA=EST /CNT=10 /TID=Rn.33124.1 /TIER=ConsEnd /STK=1 /UG=Rn.33124 /UG_TITLE=ESTs, Highly similar to T51776 dolichyl-phosphate beta-glucosyltransferase (H.sapiens) AA998062 asparagine-linked glycosylation 5, dolichyl-phosphate beta-glucosyltransferase homolog (S. cerevisiae) Alg5 295051 NM_001025407 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // not recorded 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1382020_at BE105500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105500 /DB_XREF=gi:8497602 /DB_XREF=UI-R-BX0-arv-e-05-0-UI.s1 /CLONE=UI-R-BX0-arv-e-05-0-UI /FEA=EST /CNT=10 /TID=Rn.24583.1 /TIER=ConsEnd /STK=1 /UG=Rn.24583 /UG_TITLE=ESTs BE105500 sperm associated antigen 9 Spag9 360600 NM_001108290 0000187 // activation of MAPK activity // not recorded /// 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0051260 // protein homooligomerization // not recorded /// 0051260 // protein homooligomerization // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded /// 0008432 // JUN kinase binding // not recorded /// 0008432 // JUN kinase binding // inferred from electronic annotation /// 0019894 // kinesin binding // not recorded /// 0019894 // kinesin binding // inferred from electronic annotation 1382021_at AA850650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850650 /DB_XREF=gi:2938190 /DB_XREF=EST193418 /CLONE=ROVAJ10 /FEA=EST /CNT=10 /TID=Rn.7912.1 /TIER=ConsEnd /STK=1 /UG=Rn.7912 /UG_TITLE=ESTs, Highly similar to PKD2 MOUSE POLYCYSTIN 2 (M.musculus) AA850650 polycystic kidney disease 2 homolog (human) Pkd2 498328 NM_001191934 /// XM_001058532 /// XM_573552 0005624 // membrane fraction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1382022_at BF285121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285121 /DB_XREF=gi:11216191 /DB_XREF=EST449712 /CLONE=RGIFA71 /FEA=EST /CNT=10 /TID=Rn.37285.1 /TIER=ConsEnd /STK=1 /UG=Rn.37285 /UG_TITLE=ESTs, Weakly similar to T00345 hypothetical protein KIAA0590 (H.sapiens) BF285121 intraflagellar transport 140 LOC100362124 100362124 XM_002727728 0005488 // binding // inferred from electronic annotation 1382023_at AI407113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407113 /DB_XREF=gi:4250617 /DB_XREF=EST235401 /CLONE=ROVDT60 /FEA=EST /CNT=10 /TID=Rn.8246.1 /TIER=ConsEnd /STK=1 /UG=Rn.8246 /UG_TITLE=ESTs AI407113 1382024_at BM383877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383877 /DB_XREF=gi:18183930 /DB_XREF=UI-R-DM1-ckc-g-24-0-UI.s1 /CLONE=UI-R-DM1-ckc-g-24-0-UI /FEA=EST /CNT=9 /TID=Rn.64284.1 /TIER=ConsEnd /STK=1 /UG=Rn.64284 /UG_TITLE=ESTs, Weakly similar to DnaJ-like protein (Rattus norvegicus) (R.norvegicus) BM383877 DnaJ (Hsp40) homolog, subfamily B, member 6 Dnajb6 362293 NM_001013209 0006457 // protein folding // not recorded /// 0043154 // negative regulation of caspase activity // not recorded /// 0045109 // intermediate filament organization // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0060710 // chorio-allantoic fusion // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0001671 // ATPase activator activity // not recorded /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // not recorded /// 0051087 // chaperone binding // not recorded 1382025_at BG668084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668084 /DB_XREF=gi:13890006 /DB_XREF=DRABVB09 /CLONE=DRABVB09 /FEA=EST /CNT=9 /TID=Rn.23921.1 /TIER=ConsEnd /STK=1 /UG=Rn.23921 /UG_TITLE=ESTs, Moderately similar to MTM1_MOUSE MYOTUBULARIN (M.musculus) BG668084 1382026_at BE116750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116750 /DB_XREF=gi:8508855 /DB_XREF=UI-R-BS1-aye-h-02-0-UI.s1 /CLONE=UI-R-BS1-aye-h-02-0-UI /FEA=EST /CNT=9 /TID=Rn.14833.2 /TIER=ConsEnd /STK=1 /UG=Rn.14833 /UG_TITLE=ESTs, Highly similar to GLI1_MOUSE ZINC FINGER PROTEIN GLI1 (GLIOMA-ASSOCIATED ONCOGENE HOMOLOG) (M.musculus) BE116750 Rho GTPase activating protein 9 Arhgap9 362893 NM_001012198 /// NM_001080789 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // not recorded /// 0005515 // protein binding // not recorded 1382027_at BI296880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296880 /DB_XREF=gi:14961746 /DB_XREF=UI-R-DK0-cgg-f-07-0-UI.s1 /CLONE=UI-R-DK0-cgg-f-07-0-UI /FEA=EST /CNT=9 /TID=Rn.17129.1 /TIER=ConsEnd /STK=1 /UG=Rn.17129 /UG_TITLE=ESTs BI296880 1382028_at BE115406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115406 /DB_XREF=gi:8507511 /DB_XREF=UI-R-BS1-axu-c-12-0-UI.s1 /CLONE=UI-R-BS1-axu-c-12-0-UI /FEA=EST /CNT=9 /TID=Rn.3447.1 /TIER=ConsEnd /STK=1 /UG=Rn.3447 /UG_TITLE=ESTs, Highly similar to PEROXISOMAL FARNESYLATED PROTEIN (H.sapiens) BE115406 peroxisomal biogenesis factor 19 Pex19 289233 NM_001107375 /// NM_001134777 0007031 // peroxisome organization // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 1382029_at BE104800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104800 /DB_XREF=gi:8496900 /DB_XREF=UI-R-BX0-art-g-06-0-UI.s1 /CLONE=UI-R-BX0-art-g-06-0-UI /FEA=EST /CNT=9 /TID=Rn.19152.1 /TIER=ConsEnd /STK=1 /UG=Rn.19152 /UG_TITLE=ESTs BE104800 similar to CDNA sequence BC017647 RGD1566149 497960 NM_001109038 1382030_at BF398500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398500 /DB_XREF=gi:11383491 /DB_XREF=UI-R-BS2-bep-e-08-0-UI.s1 /CLONE=UI-R-BS2-bep-e-08-0-UI /FEA=EST /CNT=9 /TID=Rn.12154.1 /TIER=ConsEnd /STK=1 /UG=Rn.12154 /UG_TITLE=ESTs, Highly similar to S44454 transcription factor BTF2 chain p44 (H.sapiens) BF398500 general transcription factor IIH, polypeptide 2 Gtf2h2 294693 NM_001077428 0000718 // nucleotide-excision repair, DNA damage removal // not recorded /// 0002031 // G-protein coupled receptor internalization // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005675 // holo TFIIH complex // not recorded /// 0005675 // holo TFIIH complex // inferred from sequence or structural similarity 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0008094 // DNA-dependent ATPase activity // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // not recorded /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1382031_at AA859079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859079 /DB_XREF=gi:4229347 /DB_XREF=UI-R-A0-ak-h-02-0-UI.s1 /CLONE=UI-R-A0-ak-h-02-0-UI /FEA=EST /CNT=8 /TID=Rn.2564.1 /TIER=ConsEnd /STK=1 /UG=Rn.2564 /UG_TITLE=ESTs AA859079 1382032_at AI407730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407730 /DB_XREF=gi:4251234 /DB_XREF=EST236020 /CLONE=ROVDS44 /FEA=EST /CNT=8 /TID=Rn.7451.1 /TIER=ConsEnd /STK=1 /UG=Rn.7451 /UG_TITLE=ESTs AI407730 1382033_at AA926284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926284 /DB_XREF=gi:4237475 /DB_XREF=UI-R-A1-ev-d-06-0-UI.s1 /CLONE=UI-R-A1-ev-d-06-0-UI /FEA=EST /CNT=8 /TID=Rn.23089.1 /TIER=ConsEnd /STK=1 /UG=Rn.23089 /UG_TITLE=ESTs, Weakly similar to core promoter element binding protein (Rattus norvegicus) (R.norvegicus) AA926284 Kruppel-like factor 1 (erythroid) Klf1 304666 NM_001107164 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0006338 // chromatin remodeling // inferred from electronic annotation /// 0006338 // chromatin remodeling // not recorded /// 0035162 // embryonic hemopoiesis // inferred from electronic annotation /// 0035162 // embryonic hemopoiesis // not recorded /// 0043249 // erythrocyte maturation // inferred from electronic annotation /// 0043249 // erythrocyte maturation // not recorded /// 0048821 // erythrocyte development // not recorded /// 0048821 // erythrocyte development // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1382034_at AA901075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901075 /DB_XREF=gi:4233573 /DB_XREF=UI-R-A1-dv-h-02-0-UI.s1 /CLONE=UI-R-A1-dv-h-02-0-UI /FEA=EST /CNT=8 /TID=Rn.8475.1 /TIER=ConsEnd /STK=1 /UG=Rn.8475 /UG_TITLE=ESTs, Weakly similar to ALDR RAT ALDOSE REDUCTASE (R.norvegicus) AA901075 aldo-keto reductase family 1, member B10 (aldose reductase) Akr1b10 296972 NM_001013084 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1382035_at AI535480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535480 /DB_XREF=gi:4449615 /DB_XREF=UI-R-C3-sy-f-01-0-UI.s1 /CLONE=UI-R-C3-sy-f-01-0-UI /FEA=EST /CNT=8 /TID=Rn.22712.1 /TIER=ConsEnd /STK=1 /UG=Rn.22712 /UG_TITLE=ESTs, Moderately similar to TRANSCRIPTION INITIATION FACTOR TFIID (M.musculus) AI535480 TATA box binding protein Tbp 117526 NM_001004198 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0006383 // transcription from RNA polymerase III promoter // inferred from electronic annotation /// 0006383 // transcription from RNA polymerase III promoter // not recorded /// 0007283 // spermatogenesis // inferred from expression pattern /// 0032568 // general transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0032568 // general transcription from RNA polymerase II promoter // not recorded /// 0045941 // positive regulation of transcription // inferred from direct assay 0001939 // female pronucleus // inferred from electronic annotation /// 0001939 // female pronucleus // not recorded /// 0001940 // male pronucleus // inferred from electronic annotation /// 0001940 // male pronucleus // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005669 // transcription factor TFIID complex // inferred from direct assay /// 0005669 // transcription factor TFIID complex // not recorded /// 0005669 // transcription factor TFIID complex // inferred from electronic annotation /// 0005672 // transcription factor TFIIA complex // inferred from electronic annotation /// 0005672 // transcription factor TFIIA complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0045120 // pronucleus // not recorded /// 0045120 // pronucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016251 // general RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0016251 // general RNA polymerase II transcription factor activity // not recorded /// 0017025 // TATA-binding protein binding // inferred from physical interaction 1382036_at AA900870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900870 /DB_XREF=gi:4233365 /DB_XREF=UI-R-E0-dk-c-05-0-UI.s1 /CLONE=UI-R-E0-dk-c-05-0-UI /FEA=EST /CNT=8 /TID=Rn.7715.1 /TIER=ConsEnd /STK=1 /UG=Rn.7715 /UG_TITLE=ESTs AA900870 talin 1 Tln1 313494 NM_001039025 0006936 // muscle contraction // not recorded /// 0007016 // cytoskeletal anchoring at plasma membrane // inferred from electronic annotation /// 0007044 // cell-substrate junction assembly // not recorded /// 0007044 // cell-substrate junction assembly // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0030866 // cortical actin cytoskeleton organization // not recorded /// 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0001726 // ruffle // inferred from sequence or structural similarity /// 0005576 // extracellular region // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from sequence or structural similarity /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005178 // integrin binding // inferred from physical interaction /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017166 // vinculin binding // not recorded /// 0017166 // vinculin binding // inferred from electronic annotation /// 0030274 // LIM domain binding // not recorded /// 0030274 // LIM domain binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1382037_at AI600057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600057 /DB_XREF=gi:4609105 /DB_XREF=EST251760 /CLONE=REMDP18 /FEA=EST /CNT=8 /TID=Rn.23220.1 /TIER=ConsEnd /STK=1 /UG=Rn.23220 /UG_TITLE=ESTs AI600057 1382038_at BE113064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113064 /DB_XREF=gi:8505169 /DB_XREF=UI-R-BJ1-awf-h-12-0-UI.s1 /CLONE=UI-R-BJ1-awf-h-12-0-UI /FEA=EST /CNT=8 /TID=Rn.27135.1 /TIER=ConsEnd /STK=1 /UG=Rn.27135 /UG_TITLE=ESTs, Highly similar to IMA6 MOUSE IMPORTIN ALPHA-6 SUBUNIT (M.musculus) BE113064 karyopherin (importin) alpha 6-like LOC100363922 100363922 XM_002726630 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 1382039_at AA944201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944201 /DB_XREF=gi:3104117 /DB_XREF=EST199700 /CLONE=REMAD58 /FEA=EST /CNT=8 /TID=Rn.11822.1 /TIER=ConsEnd /STK=1 /UG=Rn.11822 /UG_TITLE=ESTs AA944201 RAB, member of RAS oncogene family-like 2B Rabl2b 362987 NM_001013221 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1382040_at AI234919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234919 /DB_XREF=gi:3828425 /DB_XREF=EST231481 /CLONE=ROVCJ54 /FEA=EST /CNT=8 /TID=Rn.25336.1 /TIER=ConsEnd /STK=1 /UG=Rn.25336 /UG_TITLE=ESTs, Moderately similar to SYHUQT multifunctional aminoacyl-tRNA ligase (H.sapiens) AI234919 glutamyl-prolyl-tRNA synthetase Eprs 289352 NM_001024238 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006424 // glutamyl-tRNA aminoacylation // inferred from electronic annotation /// 0006433 // prolyl-tRNA aminoacylation // inferred from electronic annotation /// 0043039 // tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004818 // glutamate-tRNA ligase activity // inferred from electronic annotation /// 0004818 // glutamate-tRNA ligase activity // not recorded /// 0004827 // proline-tRNA ligase activity // inferred from electronic annotation /// 0004827 // proline-tRNA ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016876 // ligase activity, forming aminoacyl-tRNA and related compounds // inferred from electronic annotation 1382041_at BI290161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290161 /DB_XREF=gi:14948474 /DB_XREF=UI-R-DK0-cfs-h-03-0-UI.s1 /CLONE=UI-R-DK0-cfs-h-03-0-UI /FEA=EST /CNT=8 /TID=Rn.41198.1 /TIER=ConsEnd /STK=1 /UG=Rn.41198 /UG_TITLE=ESTs, Moderately similar to PLCC_HUMAN 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE GAMMA (1-AGP ACYLTRANSFERASE 3) (1-AGPAT 3) (LYSOPHOSPHATIDIC ACID ACYLTRANSFERASE-GAMMA) (LPAAT-GAMMA) (1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE 3) (H.sapiens) BI290161 1-acylglycerol-3-phosphate O-acyltransferase 3 Agpat3 294324 NM_001106378 0008152 // metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0008415 // acyltransferase activity // inferred from electronic annotation /// 0046027 // phospholipid:diacylglycerol acyltransferase activity // not recorded 1382042_at AI137817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137817 /DB_XREF=gi:3638594 /DB_XREF=UI-R-C0-ib-g-11-0-UI.s1 /CLONE=UI-R-C0-ib-g-11-0-UI /FEA=EST /CNT=8 /TID=Rn.13021.1 /TIER=ConsEnd /STK=1 /UG=Rn.13021 /UG_TITLE=ESTs AI137817 1382043_at AI234533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234533 /DB_XREF=gi:3828039 /DB_XREF=EST231095 /CLONE=RLUDA93 /FEA=EST /CNT=8 /TID=Rn.23633.1 /TIER=ConsEnd /STK=1 /UG=Rn.23633 /UG_TITLE=ESTs AI234533 unc-93 homolog B1 (C. elegans) Unc93b1 361689 NM_001108513 0002224 // toll-like receptor signaling pathway // not recorded /// 0006886 // intracellular protein transport // not recorded /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // not recorded /// 0034138 // toll-like receptor 3 signaling pathway // not recorded /// 0034154 // toll-like receptor 7 signaling pathway // not recorded /// 0034162 // toll-like receptor 9 signaling pathway // not recorded 0005764 // lysosome // not recorded /// 0005768 // endosome // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0032009 // early phagosome // not recorded 0035325 // Toll-like receptor binding // not recorded 1382044_at BF549748 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549748 /DB_XREF=gi:11659478 /DB_XREF=UI-R-A0-ay-d-10-0-UI.r1 /CLONE=UI-R-A0-ay-d-10-0-UI /FEA=EST /CNT=8 /TID=Rn.16832.1 /TIER=ConsEnd /STK=1 /UG=Rn.16832 /UG_TITLE=ESTs, Weakly similar to T08666 hypothetical protein DKFZp547N0510.1 (H.sapiens) BF549748 family with sequence similarity 107, member B Fam107b 498796 NM_001025034 1382045_at BI304056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI304056 /DB_XREF=gi:14980336 /DB_XREF=UI-R-DR0-cjc-m-06-0-UI.s1 /CLONE=UI-R-DR0-cjc-m-06-0-UI /FEA=EST /CNT=8 /TID=Rn.15910.1 /TIER=ConsEnd /STK=1 /UG=Rn.15910 /UG_TITLE=ESTs BI304056 TBC1 domain family, member 15 Tbc1d15 366896 XM_001078627 /// XM_002726886 /// XM_002729785 /// XM_345825 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1382046_at AA963495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963495 /DB_XREF=gi:4278398 /DB_XREF=UI-R-E1-gi-f-02-0-UI.s1 /CLONE=UI-R-E1-gi-f-02-0-UI /FEA=EST /CNT=8 /TID=Rn.24863.2 /TIER=ConsEnd /STK=1 /UG=Rn.24863 /UG_TITLE=ESTs AA963495 mitogen activated protein kinase kinase kinase 3 Map3k3 303604 NM_001107058 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0046777 // protein autophosphorylation // not recorded 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1382047_at AA899888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899888 /DB_XREF=gi:4232381 /DB_XREF=UI-R-E0-ck-d-07-0-UI.s2 /CLONE=UI-R-E0-ck-d-07-0-UI /FEA=EST /CNT=14 /TID=Rn.49263.1 /TIER=ConsEnd /STK=1 /UG=Rn.49263 /UG_TITLE=ESTs, Weakly similar to T13607 hypothetical protein EG:87B1.3 - fruit fly (D.melanogaster) AA899888 D-2-hydroxyglutarate dehydrogenase D2hgdh 301624 NM_001106926 0010042 // response to manganese ion // inferred from direct assay /// 0010043 // response to zinc ion // inferred from direct assay /// 0032025 // response to cobalt ion // inferred from direct assay /// 0032026 // response to magnesium ion // inferred from direct assay /// 0044267 // cellular protein metabolic process // inferred from direct assay /// 0051592 // response to calcium ion // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0051990 // (R)-2-hydroxyglutarate dehydrogenase activity // inferred from direct assay 1382048_at BI289589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289589 /DB_XREF=gi:14947314 /DB_XREF=UI-R-DK0-cff-g-09-0-UI.s1 /CLONE=UI-R-DK0-cff-g-09-0-UI /FEA=EST /CNT=13 /TID=Rn.11519.1 /TIER=ConsEnd /STK=1 /UG=Rn.11519 /UG_TITLE=ESTs, Highly similar to VATA MOUSE VACUOLAR ATP SYNTHASE CATALYTIC SUBUNIT A, UBIQUITOUS ISOFORM (M.musculus) BI289589 ATPase, H+ transporting, lysosomal V1 subunit A Atp6v1a 685232 NM_001108318 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0042777 // plasma membrane ATP synthesis coupled proton transport // inferred from electronic annotation /// 0046034 // ATP metabolic process // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0016469 // proton-transporting two-sector ATPase complex // inferred from electronic annotation /// 0033178 // proton-transporting two-sector ATPase complex, catalytic domain // inferred from electronic annotation /// 0033180 // proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0046933 // hydrogen ion transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 1382049_at AW530828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530828 /DB_XREF=gi:7173242 /DB_XREF=UI-R-C4-alb-h-10-0-UI.s1 /CLONE=UI-R-C4-alb-h-10-0-UI /FEA=EST /CNT=11 /TID=Rn.854.1 /TIER=ConsEnd /STK=1 /UG=Rn.854 /UG_TITLE=ESTs, Weakly similar to T15710 hypothetical protein C30B5.6 - Caenorhabditis elegans (C.elegans) AW530828 transmembrane protein 216 Tmem216 361727 XM_001074731 /// XM_002725784 /// XM_002728865 /// XM_342020 1382050_at AI410262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410262 /DB_XREF=gi:4253766 /DB_XREF=EST238555 /CLONE=RKIDX07 /FEA=EST /CNT=10 /TID=Rn.7315.1 /TIER=ConsEnd /STK=1 /UG=Rn.7315 /UG_TITLE=ESTs AI410262 1382051_at AA955489 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955489 /DB_XREF=gi:4237843 /DB_XREF=UI-R-A1-ex-g-02-0-UI.s1 /CLONE=UI-R-A1-ex-g-02-0-UI /FEA=EST /CNT=10 /TID=Rn.8627.1 /TIER=ConsEnd /STK=1 /UG=Rn.8627 /UG_TITLE=ESTs, Weakly similar to K08D10.2.p (Caenorhabditis elegans) (C.elegans) AA955489 HscB iron-sulfur cluster co-chaperone homolog (E. coli) Hscb 360826 NM_001108340 0006457 // protein folding // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051087 // chaperone binding // inferred from electronic annotation 1382052_at BF284373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284373 /DB_XREF=gi:11215443 /DB_XREF=EST448964 /CLONE=RGIEO86 /FEA=EST /CNT=9 /TID=Rn.11979.1 /TIER=ConsEnd /STK=1 /UG=Rn.11979 /UG_TITLE=ESTs BF284373 1382053_at BI289548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289548 /DB_XREF=gi:14947232 /DB_XREF=UI-R-DK0-cff-d-02-0-UI.s1 /CLONE=UI-R-DK0-cff-d-02-0-UI /FEA=EST /CNT=9 /TID=Rn.44763.1 /TIER=ConsEnd /STK=1 /UG=Rn.44763 /UG_TITLE=ESTs BI289548 platelet endothelial aggregation receptor 1 Pear1 295293 NM_001134959 1382054_at BF285731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285731 /DB_XREF=gi:11216801 /DB_XREF=EST450322 /CLONE=RGIFI59 /FEA=EST /CNT=9 /TID=Rn.24009.1 /TIER=ConsEnd /STK=1 /UG=Rn.24009 /UG_TITLE=ESTs BF285731 1382055_at BE096213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096213 /DB_XREF=gi:8487144 /DB_XREF=UI-R-BU0-apc-d-03-0-UI.s1 /CLONE=UI-R-BU0-apc-d-03-0-UI /FEA=EST /CNT=9 /TID=Rn.12919.1 /TIER=ConsEnd /STK=1 /UG=Rn.12919 /UG_TITLE=ESTs BE096213 rhotekin Rtkn 297383 NM_184046 0006915 // apoptosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007266 // Rho protein signal transduction // not recorded /// 0007266 // Rho protein signal transduction // inferred from sequence or structural similarity /// 0045767 // regulation of anti-apoptosis // not recorded /// 0045767 // regulation of anti-apoptosis // inferred from sequence or structural similarity /// 0050790 // regulation of catalytic activity // not recorded 0005622 // intracellular // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005095 // GTPase inhibitor activity // not recorded /// 0005095 // GTPase inhibitor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0017048 // Rho GTPase binding // not recorded /// 0017049 // GTP-Rho binding // not recorded /// 0017049 // GTP-Rho binding // inferred from sequence or structural similarity 1382056_at AI145768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145768 /DB_XREF=gi:3667567 /DB_XREF=UI-R-BT0-py-e-09-0-UI.s1 /CLONE=UI-R-BT0-py-e-09-0-UI /FEA=EST /CNT=9 /TID=Rn.40781.1 /TIER=ConsEnd /STK=1 /UG=Rn.40781 /UG_TITLE=ESTs, Weakly similar to A55817 cyclin-dependent kinase p130-PITSLRE - mouse (M.musculus) AI145768 splicing factor, arginine/serine-rich 11 Sfrs11 502603 NM_001035255 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382057_at AI058311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058311 /DB_XREF=gi:3332088 /DB_XREF=UI-R-C1-kl-g-07-0-UI.s1 /CLONE=UI-R-C1-kl-g-07-0-UI /FEA=EST /CNT=8 /TID=Rn.19073.1 /TIER=ConsEnd /STK=1 /UG=Rn.19073 /UG_TITLE=ESTs AI058311 1382058_at BI292115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292115 /DB_XREF=gi:14952303 /DB_XREF=UI-R-DN0-ciu-h-14-0-UI.s1 /CLONE=UI-R-DN0-ciu-h-14-0-UI /FEA=EST /CNT=8 /TID=Rn.29838.1 /TIER=ConsEnd /STK=1 /UG=Rn.29838 /UG_TITLE=ESTs, Weakly similar to RRAS MOUSE RAS-RELATED PROTEIN R-RAS (M.musculus) BI292115 related RAS viral (r-ras) oncogene homolog 2 Rras2 365355 NM_001013434 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded /// 0009987 // cellular process // inferred from electronic annotation /// 0009987 // cellular process // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1382059_at BI289529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289529 /DB_XREF=gi:14947195 /DB_XREF=UI-R-DK0-cff-b-06-0-UI.s1 /CLONE=UI-R-DK0-cff-b-06-0-UI /FEA=EST /CNT=8 /TID=Rn.29397.1 /TIER=ConsEnd /STK=1 /UG=Rn.29397 /UG_TITLE=ESTs BI289529 F-box protein 30 Fbxo30 308283 NM_001007690 0016567 // protein ubiquitination // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382060_at BE115085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115085 /DB_XREF=gi:8507190 /DB_XREF=UI-R-BS1-axt-a-09-0-UI.s1 /CLONE=UI-R-BS1-axt-a-09-0-UI /FEA=EST /CNT=8 /TID=Rn.30208.1 /TIER=ConsEnd /STK=1 /UG=Rn.30208 /UG_TITLE=ESTs BE115085 1382061_at AI501131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501131 /DB_XREF=gi:4398982 /DB_XREF=UI-R-C2p-rs-c-10-0-UI.s1 /CLONE=UI-R-C2p-rs-c-10-0-UI /FEA=EST /CNT=8 /TID=Rn.43996.1 /TIER=ConsEnd /STK=1 /UG=Rn.43996 /UG_TITLE=ESTs, Weakly similar to T13607 hypothetical protein EG:87B1.3 - fruit fly (D.melanogaster) AI501131 lactate dehydrogenase D Ldhd 307858 NM_001008893 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1382062_at AA943385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943385 /DB_XREF=gi:3103301 /DB_XREF=EST198884 /CLONE=RBRAI88 /FEA=EST /CNT=8 /TID=Rn.22969.1 /TIER=ConsEnd /STK=1 /UG=Rn.22969 /UG_TITLE=ESTs AA943385 glutathione S-transferase, C-terminal domain containing Gstcd 310855 NM_001107725 0006364 // rRNA processing // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008649 // rRNA methyltransferase activity // inferred from electronic annotation 1382063_at BM385090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385090 /DB_XREF=gi:18185143 /DB_XREF=UI-R-CN1-cjm-n-23-0-UI.s9 /CLONE=UI-R-CN1-cjm-n-23-0-UI /FEA=EST /CNT=8 /TID=Rn.25227.1 /TIER=ConsEnd /STK=1 /UG=Rn.25227 /UG_TITLE=ESTs, Highly similar to AGAL MOUSE ALPHA-GALACTOSIDASE A PRECURSOR (M.musculus) BM385090 galactosidase, alpha Gla 363494 NM_001108820 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009311 // oligosaccharide metabolic process // not recorded /// 0030282 // bone mineralization // not recorded /// 0046477 // glycosylceramide catabolic process // not recorded 0005576 // extracellular region // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // not recorded /// 0005794 // Golgi apparatus // not recorded 0003824 // catalytic activity // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004557 // alpha-galactosidase activity // inferred from direct assay /// 0004557 // alpha-galactosidase activity // inferred from mutant phenotype /// 0004557 // alpha-galactosidase activity // not recorded /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0016936 // galactoside binding // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0043169 // cation binding // inferred from electronic annotation 1382064_at BE095778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095778 /DB_XREF=gi:8486709 /DB_XREF=UI-R-BU0-aoz-c-11-0-UI.s1 /CLONE=UI-R-BU0-aoz-c-11-0-UI /FEA=EST /CNT=8 /TID=Rn.25051.1 /TIER=ConsEnd /STK=1 /UG=Rn.25051 /UG_TITLE=ESTs BE095778 c-Maf-inducing protein Cmip 292051 NM_001163273 1382065_at BM388726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388726 /DB_XREF=gi:18188779 /DB_XREF=UI-R-DZ0-ckm-l-16-0-UI.s1 /CLONE=UI-R-DZ0-ckm-l-16-0-UI /FEA=EST /CNT=8 /TID=Rn.40572.1 /TIER=ConsEnd /STK=1 /UG=Rn.40572 /UG_TITLE=ESTs BM388726 1382066_at AI549105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549105 /DB_XREF=gi:4466593 /DB_XREF=UI-R-C3-tq-f-02-0-UI.s1 /CLONE=UI-R-C3-tq-f-02-0-UI /FEA=EST /CNT=8 /TID=Rn.23732.1 /TIER=ConsEnd /STK=1 /UG=Rn.23732 /UG_TITLE=ESTs AI549105 R3H domain containing 2 R3hdm2 362894 NM_001130557 0003676 // nucleic acid binding // inferred from electronic annotation 1382067_at AW434917 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434917 /DB_XREF=gi:6966224 /DB_XREF=UI-R-BJ0p-afg-e-08-0-UI.s1 /CLONE=UI-R-BJ0p-afg-e-08-0-UI /FEA=EST /CNT=7 /TID=Rn.19246.1 /TIER=ConsEnd /STK=1 /UG=Rn.19246 /UG_TITLE=ESTs AW434917 UBX domain protein 2A /// UBX domain protein 2A LOC100363283 /// Ubxn2a 100363283 /// 685859 NM_001109482 /// XM_002729616 1382068_at AA963991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963991 /DB_XREF=gi:4278867 /DB_XREF=UI-R-C0-gs-g-01-0-UI.s1 /CLONE=UI-R-C0-gs-g-01-0-UI /FEA=EST /CNT=7 /TID=Rn.24964.1 /TIER=ConsEnd /STK=1 /UG=Rn.24964 /UG_TITLE=ESTs AA963991 tubby like protein 4 Tulp4 499016 NM_001109137 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded 1382069_at AA946031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946031 /DB_XREF=gi:4132669 /DB_XREF=EST201530 /CLONE=RLUBA36 /FEA=EST /CNT=7 /TID=Rn.23020.1 /TIER=ConsEnd /STK=1 /UG=Rn.23020 /UG_TITLE=ESTs AA946031 ATPase, class VI, type 11A Atp11a 306600 NM_001107324 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0015914 // phospholipid transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004012 // phospholipid-translocating ATPase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation 1382070_at AA819758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819758 /DB_XREF=gi:4228799 /DB_XREF=UI-R-A0-av-g-09-0-UI.s1 /CLONE=UI-R-A0-av-g-09-0-UI /FEA=EST /CNT=7 /TID=Rn.34197.1 /TIER=ConsEnd /STK=1 /UG=Rn.34197 /UG_TITLE=ESTs AA819758 1382071_at BI302916 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302916 /DB_XREF=gi:14979196 /DB_XREF=UI-R-DO0-cix-k-13-0-UI.s1 /CLONE=UI-R-DO0-cix-k-13-0-UI /FEA=EST /CNT=7 /TID=Rn.17159.1 /TIER=ConsEnd /STK=1 /UG=Rn.17159 /UG_TITLE=ESTs BI302916 Nuclear respiratory factor 1 Nrf1 312195 NM_001100708 0001666 // response to hypoxia // inferred from expression pattern /// 0006350 // transcription // inferred from electronic annotation /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051593 // response to folic acid // inferred from expression pattern /// 0051602 // response to electrical stimulus // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation 1382072_at AA944162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944162 /DB_XREF=gi:3104078 /DB_XREF=EST199661 /CLONE=REMAD12 /FEA=EST /CNT=7 /TID=Rn.13212.1 /TIER=ConsEnd /STK=1 /UG=Rn.13212 /UG_TITLE=ESTs AA944162 olfactomedin-like 2A Olfml2a 296708 NM_001106572 0030198 // extracellular matrix organization // not recorded 0031012 // extracellular matrix // not recorded 0042803 // protein homodimerization activity // not recorded /// 0050840 // extracellular matrix binding // not recorded 1382073_at AI179042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179042 /DB_XREF=gi:3729680 /DB_XREF=EST222724 /CLONE=RSPCA84 /FEA=EST /CNT=7 /TID=Rn.13110.1 /TIER=ConsEnd /STK=1 /UG=Rn.13110 /UG_TITLE=ESTs, Weakly similar to D25843 interferon alpha-G (H.sapiens) AI179042 interferon kappa Ifnk 313152 NM_001107925 0006952 // defense response // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0009615 // response to virus // not recorded /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0045449 // regulation of transcription // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005126 // cytokine receptor binding // inferred from electronic annotation /// 0005132 // interferon-alpha/beta receptor binding // not recorded 1382074_at AI113237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113237 /DB_XREF=gi:3513186 /DB_XREF=UI-R-C2p-nt-b-12-0-UI.s1 /CLONE=UI-R-C2p-nt-b-12-0-UI /FEA=EST /CNT=7 /TID=Rn.18272.1 /TIER=ConsEnd /STK=1 /UG=Rn.18272 /UG_TITLE=ESTs AI113237 ring finger protein 19B Rnf19b 313806 NM_001108003 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382075_at BF386499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386499 /DB_XREF=gi:11371288 /DB_XREF=UI-R-CA1-bbd-g-09-0-UI.s1 /CLONE=UI-R-CA1-bbd-g-09-0-UI /FEA=EST /CNT=7 /TID=Rn.19985.1 /TIER=ConsEnd /STK=1 /UG=Rn.19985 /UG_TITLE=ESTs BF386499 1382076_at AA955403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955403 /DB_XREF=gi:4237759 /DB_XREF=UI-R-A1-ex-c-02-0-UI.s1 /CLONE=UI-R-A1-ex-c-02-0-UI /FEA=EST /CNT=7 /TID=Rn.6192.1 /TIER=ConsEnd /STK=1 /UG=Rn.6192 /UG_TITLE=ESTs AA955403 solute carrier family 37 (glycerol-3-phosphate transporter), member 1 Slc37a1 294321 NM_001011944 0055085 // transmembrane transport // inferred from electronic annotation 1382077_at BF388974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388974 /DB_XREF=gi:11373765 /DB_XREF=UI-R-BS2-bdg-h-08-0-UI.s1 /CLONE=UI-R-BS2-bdg-h-08-0-UI /FEA=EST /CNT=7 /TID=Rn.12004.1 /TIER=ConsEnd /STK=1 /UG=Rn.12004 /UG_TITLE=ESTs BF388974 1382078_at BF283802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283802 /DB_XREF=gi:11214872 /DB_XREF=EST448393 /CLONE=RGIEH01 /FEA=EST /CNT=7 /TID=Rn.19507.1 /TIER=ConsEnd /STK=1 /UG=Rn.19507 /UG_TITLE=ESTs BF283802 1382079_at AI511007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511007 /DB_XREF=gi:4416706 /DB_XREF=UI-R-C2p-ny-a-05-0-UI.s1 /CLONE=UI-R-C2p-ny-a-05-0-UI /FEA=EST /CNT=7 /TID=Rn.7091.1 /TIER=ConsEnd /STK=1 /UG=Rn.7091 /UG_TITLE=ESTs AI511007 1382080_at AW523680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523680 /DB_XREF=gi:7166065 /DB_XREF=UI-R-BO0-aic-h-11-0-UI.s1 /CLONE=UI-R-BO0-aic-h-11-0-UI /FEA=EST /CNT=7 /TID=Rn.7471.1 /TIER=ConsEnd /STK=1 /UG=Rn.7471 /UG_TITLE=ESTs AW523680 zinc finger CCCH type containing 13 Zc3h13 305955 NM_001170471 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382081_at AA957749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957749 /DB_XREF=gi:4277639 /DB_XREF=UI-R-E1-gc-d-03-0-UI.s1 /CLONE=UI-R-E1-gc-d-03-0-UI /FEA=EST /CNT=7 /TID=Rn.9379.1 /TIER=ConsEnd /STK=1 /UG=Rn.9379 /UG_TITLE=ESTs AA957749 scavenger receptor class A, member 3 Scara3 364405 NM_001108870 0004872 // receptor activity // inferred from electronic annotation 1382082_at AI145337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145337 /DB_XREF=gi:3667130 /DB_XREF=UI-R-BT0-pq-g-06-0-UI.s1 /CLONE=UI-R-BT0-pq-g-06-0-UI /FEA=EST /CNT=7 /TID=Rn.22209.1 /TIER=ConsEnd /STK=1 /UG=Rn.22209 /UG_TITLE=ESTs AI145337 nuclear transcription factor-Y beta Nfyb 25336 NM_031553 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016602 // CCAAT-binding factor complex // inferred from electronic annotation /// 0016602 // CCAAT-binding factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0070491 // transcription repressor binding // inferred from electronic annotation /// 0070491 // transcription repressor binding // not recorded 1382083_at BF287593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287593 /DB_XREF=gi:11218663 /DB_XREF=EST452184 /CLONE=RGIGI06 /FEA=EST /CNT=7 /TID=Rn.8204.1 /TIER=ConsEnd /STK=1 /UG=Rn.8204 /UG_TITLE=ESTs BF287593 coagulation factor C homolog, cochlin (Limulus polyphemus) Coch 362735 NM_001108710 1382084_at AA850264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850264 /DB_XREF=gi:2937804 /DB_XREF=EST193031 /CLONE=ROVAE31 /FEA=EST /CNT=7 /TID=Rn.36595.1 /TIER=ConsEnd /STK=1 /UG=Rn.36595 /UG_TITLE=ESTs, Weakly similar to PROTEIN-TYROSINE PHOSPHATASE 2E (R.norvegicus) AA850264 Similar to EHM2 RGD1562988 500464 NM_001127565 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0019898 // extrinsic to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 1382085_at BI293662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293662 /DB_XREF=gi:14955365 /DB_XREF=UI-R-DK0-cdu-b-09-0-UI.s1 /CLONE=UI-R-DK0-cdu-b-09-0-UI /FEA=EST /CNT=7 /TID=Rn.41249.1 /TIER=ConsEnd /STK=1 /UG=Rn.41249 /UG_TITLE=ESTs BI293662 MTERF domain containing 2 Mterfd2 363289 NM_001037209 1382086_at AI235883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235883 /DB_XREF=gi:3829389 /DB_XREF=EST232445 /CLONE=ROVCY19 /FEA=EST /CNT=7 /TID=Rn.19680.1 /TIER=ConsEnd /STK=1 /UG=Rn.19680 /UG_TITLE=ESTs AI235883 1382087_at BE109382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109382 /DB_XREF=gi:8501487 /DB_XREF=UI-R-BJ1-aur-d-08-0-UI.s1 /CLONE=UI-R-BJ1-aur-d-08-0-UI /FEA=EST /CNT=7 /TID=Rn.6259.2 /TIER=ConsEnd /STK=1 /UG=Rn.6259 /UG_TITLE=ESTs, Moderately similar to HIG2_HUMAN HYPOXIA-INDUCIBLE PROTEIN 2 (H.sapiens) BE109382 1382088_at AI548753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548753 /DB_XREF=gi:4466241 /DB_XREF=UI-R-C3-tr-b-11-0-UI.s1 /CLONE=UI-R-C3-tr-b-11-0-UI /FEA=EST /CNT=7 /TID=Rn.20442.1 /TIER=ConsEnd /STK=1 /UG=Rn.20442 /UG_TITLE=ESTs AI548753 ryanodine receptor 2, cardiac Ryr2 689560 NM_001191043 /// NM_032078 0005513 // detection of calcium ion // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from expression pattern /// 0008627 // induction of apoptosis by ionic changes // inferred from electronic annotation /// 0014808 // release of sequestered calcium ion into cytosol by sarcoplasmic reticulum // inferred from direct assay /// 0031000 // response to caffeine // inferred from electronic annotation /// 0031000 // response to caffeine // inferred from direct assay /// 0032026 // response to magnesium ion // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0051209 // release of sequestered calcium ion into cytosol // inferred from direct assay /// 0051480 // cytosolic calcium ion homeostasis // inferred from mutant phenotype /// 0051480 // cytosolic calcium ion homeostasis // inferred from direct assay /// 0051592 // response to calcium ion // inferred from direct assay /// 0051775 // response to redox state // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060048 // cardiac muscle contraction // inferred from electronic annotation 0001950 // plasma membrane enriched fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030018 // Z disc // inferred from direct assay /// 0030018 // Z disc // inferred from electronic annotation /// 0033017 // sarcoplasmic reticulum membrane // inferred from electronic annotation /// 0034704 // calcium channel complex // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005219 // ryanodine-sensitive calcium-release channel activity // inferred from electronic annotation /// 0005219 // ryanodine-sensitive calcium-release channel activity // inferred from direct assay /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0015278 // calcium-release channel activity // inferred from electronic annotation /// 0034236 // protein kinase A catalytic subunit binding // inferred from electronic annotation /// 0034237 // protein kinase A regulatory subunit binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0043924 // suramin binding // inferred from electronic annotation 1382089_at AI070489 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070489 /DB_XREF=gi:3396740 /DB_XREF=UI-R-C2-mq-h-10-0-UI.s1 /CLONE=UI-R-C2-mq-h-10-0-UI /FEA=EST /CNT=7 /TID=Rn.21317.1 /TIER=ConsEnd /STK=1 /UG=Rn.21317 /UG_TITLE=ESTs AI070489 1382090_at AI070376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070376 /DB_XREF=gi:3396627 /DB_XREF=UI-R-Y0-lt-c-09-0-UI.s1 /CLONE=UI-R-Y0-lt-c-09-0-UI /FEA=EST /CNT=7 /TID=Rn.22595.1 /TIER=ConsEnd /STK=1 /UG=Rn.22595 /UG_TITLE=ESTs AI070376 1382091_at AI502372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502372 /DB_XREF=gi:4400223 /DB_XREF=UI-R-C0-jh-a-05-0-UI.s1 /CLONE=UI-R-C0-jh-a-05-0-UI /FEA=EST /CNT=7 /TID=Rn.37064.1 /TIER=ConsEnd /STK=1 /UG=Rn.37064 /UG_TITLE=ESTs AI502372 Hypothetical protein LOC685527 LOC685527 685527 XM_001064158 /// XM_001066496 1382092_at AA965250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965250 /DB_XREF=gi:4280124 /DB_XREF=UI-R-C0-hd-a-08-0-UI.s1 /CLONE=UI-R-C0-hd-a-08-0-UI /FEA=EST /CNT=7 /TID=Rn.22288.1 /TIER=ConsEnd /STK=1 /UG=Rn.22288 /UG_TITLE=ESTs AA965250 PHD finger protein 20-like 1 Phf20l1 314964 NM_001025702 0003676 // nucleic acid binding // inferred from electronic annotation 1382093_at AI178038 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178038 /DB_XREF=gi:3728676 /DB_XREF=EST221697 /CLONE=RPLCK31 /FEA=EST /CNT=7 /TID=Rn.43966.2 /TIER=ConsEnd /STK=1 /UG=Rn.43966 /UG_TITLE=ESTs, Highly similar to T17310 hypothetical protein DKFZp434B168.1 (H.sapiens) AI178038 Integrator complex subunit 7 Ints7 289382 NM_001191675 /// XM_001067053 /// XM_223075 0016180 // snRNA processing // not recorded 0032039 // integrator complex // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382094_at BI285519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285519 /DB_XREF=gi:14939244 /DB_XREF=UI-R-CW0s-ccb-b-01-0-UI.s1 /CLONE=UI-R-CW0s-ccb-b-01-0-UI /FEA=EST /CNT=7 /TID=Rn.22210.1 /TIER=ConsEnd /STK=1 /UG=Rn.22210 /UG_TITLE=ESTs BI285519 protein tyrosine phosphatase, receptor type, J Ptprj 29645 NM_017269 0001570 // vasculogenesis // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005886 // plasma membrane // not recorded /// 0030054 // cell junction // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1382095_at AW918106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918106 /DB_XREF=gi:8083874 /DB_XREF=EST349410 /CLONE=RGIEM42 /FEA=EST /CNT=7 /TID=Rn.18476.1 /TIER=ConsEnd /STK=1 /UG=Rn.18476 /UG_TITLE=ESTs AW918106 1382096_at AI705040 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI705040 /DB_XREF=gi:4992940 /DB_XREF=UI-R-G0-uj-b-03-0-UI.s2 /CLONE=UI-R-G0-uj-b-03-0-UI /FEA=EST /CNT=7 /TID=Rn.19749.1 /TIER=ConsEnd /STK=1 /UG=Rn.19749 /UG_TITLE=ESTs AI705040 CKLF-like MARVEL transmembrane domain containing 5 Cmtm5 290214 NM_001106034 0016020 // membrane // inferred from electronic annotation 1382097_at AI145591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145591 /DB_XREF=gi:3667390 /DB_XREF=UI-R-BT0-ps-a-06-0-UI.s1 /CLONE=UI-R-BT0-ps-a-06-0-UI /FEA=EST /CNT=7 /TID=Rn.16953.1 /TIER=ConsEnd /STK=1 /UG=Rn.16953 /UG_TITLE=ESTs AI145591 1382098_at AI228756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228756 /DB_XREF=gi:3812643 /DB_XREF=EST225451 /CLONE=RBRCZ08 /FEA=EST /CNT=12 /TID=Rn.19577.1 /TIER=ConsEnd /STK=1 /UG=Rn.19577 /UG_TITLE=ESTs AI228756 1382099_at BI289595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289595 /DB_XREF=gi:14947330 /DB_XREF=UI-R-DK0-cff-h-03-0-UI.s1 /CLONE=UI-R-DK0-cff-h-03-0-UI /FEA=EST /CNT=12 /TID=Rn.24981.1 /TIER=ConsEnd /STK=1 /UG=Rn.24981 /UG_TITLE=ESTs, Highly similar to H58 PROTEIN (M.musculus) BI289595 vacuolar protein sorting 26 homolog A (S. pombe) Vps26a 361846 NM_001007740 0006810 // transport // inferred from electronic annotation /// 0007034 // vacuolar transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005829 // cytosol // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030904 // retromer complex // inferred from electronic annotation 0005515 // protein binding // not recorded 1382100_at AA997169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997169 /DB_XREF=gi:4282041 /DB_XREF=UI-R-C0-hs-e-11-0-UI.s1 /CLONE=UI-R-C0-hs-e-11-0-UI /FEA=EST /CNT=11 /TID=Rn.37930.1 /TIER=ConsEnd /STK=1 /UG=Rn.37930 /UG_TITLE=ESTs AA997169 family with sequence similarity 188, member A Fam188a 291320 NM_001106122 0005509 // calcium ion binding // inferred from electronic annotation 1382101_at AI714262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI714262 /DB_XREF=gi:5018062 /DB_XREF=UI-R-AF1-aat-f-07-0-UI.s1 /CLONE=UI-R-AF1-aat-f-07-0-UI /FEA=EST /CNT=11 /TID=Rn.61244.1 /TIER=ConsEnd /STK=1 /UG=Rn.61244 /UG_TITLE=ESTs, Weakly similar to SEGREGATION DISTORTER PROTEIN (D.melanogaster) AI714262 heparan sulfate 2-O-sulfotransferase 1 Hs2st1 292155 NM_001100518 0015014 // heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process // inferred from electronic annotation /// 0015014 // heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process // not recorded /// 0016051 // carbohydrate biosynthetic process // inferred from electronic annotation /// 0030202 // heparin metabolic process // inferred from electronic annotation /// 0030202 // heparin metabolic process // not recorded /// 0060676 // ureteric bud formation // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0004394 // heparan sulfate 2-O-sulfotransferase activity // inferred from electronic annotation /// 0004394 // heparan sulfate 2-O-sulfotransferase activity // not recorded /// 0008146 // sulfotransferase activity // inferred from electronic annotation 1382102_at BM388118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388118 /DB_XREF=gi:18188171 /DB_XREF=UI-R-DM1-cjz-j-21-0-UI.s1 /CLONE=UI-R-DM1-cjz-j-21-0-UI /FEA=EST /CNT=10 /TID=Rn.25479.1 /TIER=ConsEnd /STK=1 /UG=Rn.25479 /UG_TITLE=ESTs BM388118 1382103_at AI549036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549036 /DB_XREF=gi:4466524 /DB_XREF=UI-R-C3-tv-g-03-0-UI.s1 /CLONE=UI-R-C3-tv-g-03-0-UI /FEA=EST /CNT=10 /TID=Rn.16275.2 /TIER=ConsEnd /STK=1 /UG=Rn.16275 /UG_TITLE=ESTs, Highly similar to AGM1_HUMAN PHOSPHOACETYLGLUCOSAMINE MUTASE (PAGM) (ACETYLGLUCOSAMINE PHOSPHOMUTASE) (N-ACETYLGLUCOSAMINE-PHOSPHATE MUTASE) (H.sapiens) AI549036 phosphoglucomutase 3 Pgm3 363109 NM_001108772 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006048 // UDP-N-acetylglucosamine biosynthetic process // not recorded /// 0007283 // spermatogenesis // not recorded /// 0009790 // embryo development // not recorded /// 0019255 // glucose 1-phosphate metabolic process // not recorded /// 0030097 // hemopoiesis // not recorded 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004610 // phosphoacetylglucosamine mutase activity // inferred from electronic annotation /// 0004610 // phosphoacetylglucosamine mutase activity // not recorded /// 0004614 // phosphoglucomutase activity // not recorded /// 0016868 // intramolecular transferase activity, phosphotransferases // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382104_at AI113277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113277 /DB_XREF=gi:3513226 /DB_XREF=UI-R-C2p-nt-g-02-0-UI.s1 /CLONE=UI-R-C2p-nt-g-02-0-UI /FEA=EST /CNT=9 /TID=Rn.22892.1 /TIER=ConsEnd /STK=1 /UG=Rn.22892 /UG_TITLE=ESTs, Weakly similar to S51295 hypothetical protein YNL317w - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AI113277 WD repeat domain 33 Wdr33 307524 NM_001107398 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1382105_at AI603217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI603217 /DB_XREF=gi:4612378 /DB_XREF=UI-R-AF0-ye-e-05-0-UI.s1 /CLONE=UI-R-AF0-ye-e-05-0-UI /FEA=EST /CNT=9 /TID=Rn.23042.1 /TIER=ConsEnd /STK=1 /UG=Rn.23042 /UG_TITLE=ESTs, Moderately similar to GBB5 MOUSE GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT 5 (R.norvegicus) AI603217 guanine nucleotide binding protein (G protein), beta 5 Gnb5 83579 NM_031770 0007165 // signal transduction // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // traceable author statement 0005634 // nucleus // not recorded /// 0005834 // heterotrimeric G-protein complex // traceable author statement /// 0005886 // plasma membrane // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382106_at AA848629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848629 /DB_XREF=gi:2936169 /DB_XREF=EST191389 /CLONE=RLUAC48 /FEA=EST /CNT=8 /TID=Rn.8032.1 /TIER=ConsEnd /STK=1 /UG=Rn.8032 /UG_TITLE=ESTs AA848629 chemokine (C-C motif) ligand 6 Ccl6 287910 NM_001004202 0006915 // apoptosis // traceable author statement /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0060326 // cell chemotaxis // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from direct assay /// 0008009 // chemokine activity // inferred from electronic annotation /// 0031726 // CCR1 chemokine receptor binding // inferred by curator 1382107_at AI176848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176848 /DB_XREF=gi:3727486 /DB_XREF=EST220451 /CLONE=ROVBX66 /FEA=EST /CNT=8 /TID=Rn.13112.1 /TIER=ConsEnd /STK=1 /UG=Rn.13112 /UG_TITLE=ESTs AI176848 1382108_at AA900536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900536 /DB_XREF=gi:4233028 /DB_XREF=UI-R-E0-ch-b-07-0-UI.s3 /CLONE=UI-R-E0-ch-b-07-0-UI /FEA=EST /CNT=8 /TID=Rn.15077.1 /TIER=ConsEnd /STK=1 /UG=Rn.15077 /UG_TITLE=ESTs AA900536 1382109_at BI301006 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301006 /DB_XREF=gi:14977286 /DB_XREF=UI-R-DK0-cer-a-02-0-UI.s2 /CLONE=UI-R-DK0-cer-a-02-0-UI /FEA=EST /CNT=8 /TID=Rn.12473.1 /TIER=ConsEnd /STK=1 /UG=Rn.12473 /UG_TITLE=ESTs, Weakly similar to S26059 probable transforming protein (H.sapiens) BI301006 NFKB activating protein Nkap 298342 NM_001024872 0006350 // transcription // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0046638 // positive regulation of alpha-beta T cell differentiation // not recorded /// 0046638 // positive regulation of alpha-beta T cell differentiation // inferred from sequence or structural similarity /// 0046638 // positive regulation of alpha-beta T cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from electronic annotation 1382110_at AA899630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899630 /DB_XREF=gi:4232128 /DB_XREF=UI-R-E0-dg-f-05-0-UI.s1 /CLONE=UI-R-E0-dg-f-05-0-UI /FEA=EST /CNT=8 /TID=Rn.43984.1 /TIER=ConsEnd /STK=1 /UG=Rn.43984 /UG_TITLE=ESTs, Weakly similar to T19210 hypothetical protein C11H1.7 - Caenorhabditis elegans (C.elegans) AA899630 canopy 3 homolog (zebrafish) Cnpy3 685174 NM_001134710 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation 1382111_at AI454360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454360 /DB_XREF=gi:4293181 /DB_XREF=UI-R-A0-aw-g-02-0-UI.s1 /CLONE=UI-R-A0-aw-g-02-0-UI /FEA=EST /CNT=8 /TID=Rn.19978.1 /TIER=ConsEnd /STK=1 /UG=Rn.19978 /UG_TITLE=ESTs AI454360 glyoxalase domain containing 5 Glod5 302554 NM_001106957 1382112_at BM385698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385698 /DB_XREF=gi:18185751 /DB_XREF=UI-R-CN1-clx-o-05-0-UI.s1 /CLONE=UI-R-CN1-clx-o-05-0-UI /FEA=EST /CNT=7 /TID=Rn.22984.1 /TIER=ConsEnd /STK=1 /UG=Rn.22984 /UG_TITLE=ESTs BM385698 chromatin modifying protein 1B Chmp1b 689364 NM_001109533 0015031 // protein transport // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0019904 // protein domain specific binding // not recorded 1382113_at BF398543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398543 /DB_XREF=gi:11383536 /DB_XREF=UI-R-BS2-beq-a-07-0-UI.s1 /CLONE=UI-R-BS2-beq-a-07-0-UI /FEA=EST /CNT=7 /TID=Rn.17914.1 /TIER=ConsEnd /STK=1 /UG=Rn.17914 /UG_TITLE=ESTs BF398543 Similar to expressed sequence AI449175 MGC72612 494340 NM_001009538 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382114_at BG379991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379991 /DB_XREF=gi:13304463 /DB_XREF=UI-R-CS0-bto-f-09-0-UI.s1 /CLONE=UI-R-CS0-bto-f-09-0-UI /FEA=EST /CNT=7 /TID=Rn.6114.1 /TIER=ConsEnd /STK=1 /UG=Rn.6114 /UG_TITLE=ESTs BG379991 tousled-like kinase 1 Tlk1 311118 NM_001107734 0001672 // regulation of chromatin assembly or disassembly // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006886 // intracellular protein transport // not recorded /// 0023034 // intracellular signaling pathway // not recorded 0005634 // nucleus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1382115_at BE099174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099174 /DB_XREF=gi:8491050 /DB_XREF=UI-R-BJ1-atz-b-04-0-UI.s1 /CLONE=UI-R-BJ1-atz-b-04-0-UI /FEA=EST /CNT=7 /TID=Rn.22713.1 /TIER=ConsEnd /STK=1 /UG=Rn.22713 /UG_TITLE=ESTs, Moderately similar to T08708 hypothetical protein DKFZp564D116.1 (H.sapiens) BE099174 tectonic family member 3 Tctn3 309486 XM_001053561 /// XM_220007 1382116_at AW529348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529348 /DB_XREF=gi:7171762 /DB_XREF=UI-R-BT1-akm-h-08-0-UI.s1 /CLONE=UI-R-BT1-akm-h-08-0-UI /FEA=EST /CNT=7 /TID=Rn.44758.1 /TIER=ConsEnd /STK=1 /UG=Rn.44758 /UG_TITLE=ESTs AW529348 1382117_at BF417345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417345 /DB_XREF=gi:11405334 /DB_XREF=UI-R-CN0-bld-b-02-0-UI.s1 /CLONE=UI-R-CN0-bld-b-02-0-UI /FEA=EST /CNT=7 /TID=Rn.18307.1 /TIER=ConsEnd /STK=1 /UG=Rn.18307 /UG_TITLE=ESTs, Weakly similar to S67314 regulatory protein RMS1 - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BF417345 SET domain containing 6 Setd6 291844 NM_001106167 1382118_at BE104676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104676 /DB_XREF=gi:8496776 /DB_XREF=UI-R-BX0-ars-c-03-0-UI.s1 /CLONE=UI-R-BX0-ars-c-03-0-UI /FEA=EST /CNT=7 /TID=Rn.12821.1 /TIER=ConsEnd /STK=1 /UG=Rn.12821 /UG_TITLE=ESTs BE104676 rCG32052-like LOC100363005 100363005 XM_002725510 /// XM_002728663 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1382119_at BI303937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303937 /DB_XREF=gi:14980217 /DB_XREF=UI-R-DR0-cjb-p-08-0-UI.s1 /CLONE=UI-R-DR0-cjb-p-08-0-UI /FEA=EST /CNT=7 /TID=Rn.15094.1 /TIER=ConsEnd /STK=1 /UG=Rn.15094 /UG_TITLE=ESTs, Moderately similar to G01522 acidic 82 kDa protein (H.sapiens) BI303937 1382120_at AI535147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535147 /DB_XREF=gi:4449282 /DB_XREF=UI-R-C3-sp-g-10-0-UI.s1 /CLONE=UI-R-C3-sp-g-10-0-UI /FEA=EST /CNT=7 /TID=Rn.54835.1 /TIER=ConsEnd /STK=1 /UG=Rn.54835 /UG_TITLE=ESTs AI535147 enhancer of polycomb homolog 2 (Drosophila) Epc2 362132 NM_001108581 1382121_at BI292282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292282 /DB_XREF=gi:14952626 /DB_XREF=UI-R-DN0-civ-k-18-0-UI.s1 /CLONE=UI-R-DN0-civ-k-18-0-UI /FEA=EST /CNT=7 /TID=Rn.20594.1 /TIER=ConsEnd /STK=1 /UG=Rn.20594 /UG_TITLE=ESTs BI292282 stromal interaction molecule 1 Stim1 361618 NM_001108496 0005513 // detection of calcium ion // not recorded /// 0005513 // detection of calcium ion // inferred from sequence or structural similarity /// 0005513 // detection of calcium ion // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0032237 // activation of store-operated calcium channel activity // not recorded /// 0032237 // activation of store-operated calcium channel activity // inferred from sequence or structural similarity /// 0032237 // activation of store-operated calcium channel activity // inferred from electronic annotation /// 0051924 // regulation of calcium ion transport // not recorded /// 0051924 // regulation of calcium ion transport // inferred from sequence or structural similarity /// 0051924 // regulation of calcium ion transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded /// 0030176 // integral to endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051010 // microtubule plus-end binding // not recorded /// 0051010 // microtubule plus-end binding // inferred from sequence or structural similarity /// 0051010 // microtubule plus-end binding // inferred from electronic annotation 1382122_at BE113124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113124 /DB_XREF=gi:8505229 /DB_XREF=UI-R-BJ1-awb-g-11-0-UI.s1 /CLONE=UI-R-BJ1-awb-g-11-0-UI /FEA=EST /CNT=7 /TID=Rn.18397.1 /TIER=ConsEnd /STK=1 /UG=Rn.18397 /UG_TITLE=ESTs BE113124 Ets variant 5 Etv5 303828 NM_001107082 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0034599 // cellular response to oxidative stress // not recorded /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0045941 // positive regulation of transcription // not recorded /// 0048133 // male germ-line stem cell division // inferred from mutant phenotype /// 0060252 // positive regulation of glial cell proliferation // inferred from mutant phenotype /// 0060762 // regulation of branching involved in mammary gland duct morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1382123_at AI574734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI574734 /DB_XREF=gi:4544730 /DB_XREF=UI-R-G0-ub-a-04-0-UI.s1 /CLONE=UI-R-G0-ub-a-04-0-UI /FEA=EST /CNT=7 /TID=Rn.7585.1 /TIER=ConsEnd /STK=1 /UG=Rn.7585 /UG_TITLE=ESTs AI574734 1382124_at BE105042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105042 /DB_XREF=gi:8497143 /DB_XREF=UI-R-BX0-asf-f-10-0-UI.s1 /CLONE=UI-R-BX0-asf-f-10-0-UI /FEA=EST /CNT=7 /TID=Rn.50710.1 /TIER=ConsEnd /STK=1 /UG=Rn.50710 /UG_TITLE=ESTs BE105042 cyclin M3 Cnnm3 301345 NM_001106901 0005515 // protein binding // not recorded 1382125_at AI072976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072976 /DB_XREF=gi:3399170 /DB_XREF=UI-R-Y0-ly-f-09-0-UI.s1 /CLONE=UI-R-Y0-ly-f-09-0-UI /FEA=EST /CNT=7 /TID=Rn.8581.1 /TIER=ConsEnd /STK=1 /UG=Rn.8581 /UG_TITLE=ESTs AI072976 Membrane-associated ring finger (C3HC4) 7 March7 311059 NM_001012087 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382126_at AW528959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528959 /DB_XREF=gi:7171373 /DB_XREF=UI-R-BU0-amx-e-09-0-UI.s1 /CLONE=UI-R-BU0-amx-e-09-0-UI /FEA=EST /CNT=7 /TID=Rn.24948.1 /TIER=ConsEnd /STK=1 /UG=Rn.24948 /UG_TITLE=ESTs AW528959 Nuclear receptor co-repressor 1 Ncor1 54299 XM_001077495 /// XM_577103 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0002361 // CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation // inferred from electronic annotation /// 0002361 // CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0014067 // negative regulation of phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014067 // negative regulation of phosphoinositide 3-kinase cascade // not recorded /// 0016481 // negative regulation of transcription // inferred from mutant phenotype /// 0016481 // negative regulation of transcription // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0021549 // cerebellum development // inferred from expression pattern /// 0021794 // thalamus development // inferred from electronic annotation /// 0021794 // thalamus development // not recorded /// 0031065 // positive regulation of histone deacetylation // inferred from electronic annotation /// 0031065 // positive regulation of histone deacetylation // not recorded /// 0032922 // circadian regulation of gene expression // inferred from electronic annotation /// 0032922 // circadian regulation of gene expression // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0051225 // spindle assembly // not recorded /// 0060318 // definitive erythrocyte differentiation // inferred from electronic annotation /// 0060318 // definitive erythrocyte differentiation // not recorded 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded /// 0017053 // transcriptional repressor complex // not recorded /// 0044428 // nuclear part // inferred from electronic annotation /// 0044428 // nuclear part // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0035033 // histone deacetylase regulator activity // inferred from electronic annotation /// 0035033 // histone deacetylase regulator activity // not recorded /// 0042826 // histone deacetylase binding // not recorded /// 0042974 // retinoic acid receptor binding // not recorded /// 0042974 // retinoic acid receptor binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // not recorded /// 0046966 // thyroid hormone receptor binding // inferred from electronic annotation /// 0046966 // thyroid hormone receptor binding // not recorded 1382127_at AI716708 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716708 /DB_XREF=gi:5033964 /DB_XREF=UI-R-Y0-acf-c-03-0-UI.s1 /CLONE=UI-R-Y0-acf-c-03-0-UI /FEA=EST /CNT=7 /TID=Rn.25033.1 /TIER=ConsEnd /STK=1 /UG=Rn.25033 /UG_TITLE=ESTs AI716708 1382128_at BI289196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289196 /DB_XREF=gi:14946522 /DB_XREF=UI-R-DK0-cfj-a-03-0-UI.s1 /CLONE=UI-R-DK0-cfj-a-03-0-UI /FEA=EST /CNT=7 /TID=Rn.44985.1 /TIER=ConsEnd /STK=1 /UG=Rn.44985 /UG_TITLE=ESTs BI289196 1382129_at AI136136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136136 /DB_XREF=gi:3636913 /DB_XREF=UI-R-C2p-ny-e-08-0-UI.s1 /CLONE=UI-R-C2p-ny-e-08-0-UI /FEA=EST /CNT=7 /TID=Rn.22984.2 /TIER=ConsEnd /STK=1 /UG=Rn.22984 /UG_TITLE=ESTs AI136136 Chromatin modifying protein 1B Chmp1b 689364 NM_001109533 0015031 // protein transport // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0019904 // protein domain specific binding // not recorded 1382130_at AA997710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997710 /DB_XREF=gi:4280992 /DB_XREF=UI-R-C0-hp-g-04-0-UI.s1 /CLONE=UI-R-C0-hp-g-04-0-UI /FEA=EST /CNT=6 /TID=Rn.24970.1 /TIER=ConsEnd /STK=1 /UG=Rn.24970 /UG_TITLE=ESTs AA997710 protocadherin 19 Pcdh19 317183 NM_001169129 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1382131_at AW523674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523674 /DB_XREF=gi:7166059 /DB_XREF=UI-R-BO0-aic-h-03-0-UI.s1 /CLONE=UI-R-BO0-aic-h-03-0-UI /FEA=EST /CNT=6 /TID=Rn.20898.1 /TIER=ConsEnd /STK=1 /UG=Rn.20898 /UG_TITLE=ESTs AW523674 1382132_at AW524858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524858 /DB_XREF=gi:7167243 /DB_XREF=UI-R-BO0-aid-b-03-0-UI.s1 /CLONE=UI-R-BO0-aid-b-03-0-UI /FEA=EST /CNT=6 /TID=Rn.19824.1 /TIER=ConsEnd /STK=1 /UG=Rn.19824 /UG_TITLE=ESTs AW524858 1382133_at AW526024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526024 /DB_XREF=gi:7168409 /DB_XREF=UI-R-BO1-aiy-d-07-0-UI.s1 /CLONE=UI-R-BO1-aiy-d-07-0-UI /FEA=EST /CNT=6 /TID=Rn.41801.1 /TIER=ConsEnd /STK=1 /UG=Rn.41801 /UG_TITLE=ESTs AW526024 1382134_at AI227643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227643 /DB_XREF=gi:3811530 /DB_XREF=EST224338 /CLONE=RBRCJ64 /FEA=EST /CNT=6 /TID=Rn.22729.1 /TIER=ConsEnd /STK=1 /UG=Rn.22729 /UG_TITLE=ESTs, Weakly similar to T17138 CL1AA protein - rat (R.norvegicus) AI227643 olfactomedin-like 1 Olfml1 361621 NM_001013192 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382135_at AI012683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012683 /DB_XREF=gi:4133681 /DB_XREF=EST207134 /CLONE=RPLBA42 /FEA=EST /CNT=6 /TID=Rn.30126.2 /TIER=ConsEnd /STK=1 /UG=Rn.30126 /UG_TITLE=ESTs, Weakly similar to A48133 pre-mRNA splicing SRp75 (H.sapiens) AI012683 similar to CG9346-PA RGD1307882 315903 XM_001065014 /// XM_002727119 /// XM_002729954 /// XM_236501 0006396 // RNA processing // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1382136_at AA858900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858900 /DB_XREF=gi:4229174 /DB_XREF=UI-R-A0-bi-e-05-0-UI.s1 /CLONE=UI-R-A0-bi-e-05-0-UI /FEA=EST /CNT=6 /TID=Rn.31725.1 /TIER=ConsEnd /STK=1 /UG=Rn.31725 /UG_TITLE=ESTs, Weakly similar to fructose transporter (R.norvegicus) AA858900 solute carrier family 2 (facilitated glucose transporter), member 9 Slc2a9 501925 NM_001191551 /// XM_001062303 /// XM_002724982 /// XM_002728120 /// XM_577349 0015758 // glucose transport // not recorded /// 0035428 // hexose transmembrane transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005635 // nuclear envelope // not recorded /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005355 // glucose transmembrane transporter activity // not recorded /// 0022891 // substrate-specific transmembrane transporter activity // inferred from electronic annotation 1382137_at BG662490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG662490 /DB_XREF=gi:13884412 /DB_XREF=DRAAAD04 /CLONE=DRAAAD04 /FEA=EST /CNT=6 /TID=Rn.19556.1 /TIER=ConsEnd /STK=1 /UG=Rn.19556 /UG_TITLE=ESTs, Weakly similar to T29568 hypothetical protein C44C1.5 - Caenorhabditis elegans (C.elegans) BG662490 abhydrolase domain containing 3 Abhd3 291793 NM_001106162 0004091 // carboxylesterase activity // inferred from electronic annotation 1382138_at BG380221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380221 /DB_XREF=gi:13304693 /DB_XREF=UI-R-CS0-btq-d-12-0-UI.s1 /CLONE=UI-R-CS0-btq-d-12-0-UI /FEA=EST /CNT=6 /TID=Rn.55341.1 /TIER=ConsEnd /STK=1 /UG=Rn.55341 /UG_TITLE=ESTs BG380221 Notch-regulated ankyrin repeat protein Nrarp 499745 NM_001143750 1382139_at BE108950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108950 /DB_XREF=gi:8501055 /DB_XREF=UI-R-BS1-aza-c-07-0-UI.s1 /CLONE=UI-R-BS1-aza-c-07-0-UI /FEA=EST /CNT=6 /TID=Rn.6900.1 /TIER=ConsEnd /STK=1 /UG=Rn.6900 /UG_TITLE=ESTs BE108950 regulatory factor X, 7 Rfx7 315804 NM_001127490 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1382140_at AI012247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012247 /DB_XREF=gi:3226079 /DB_XREF=EST206698 /CLONE=RPLAU42 /FEA=EST /CNT=6 /TID=Rn.17823.1 /TIER=ConsEnd /STK=1 /UG=Rn.17823 /UG_TITLE=ESTs AI012247 THO complex 2 Thoc2 313308 NM_001191756 /// XM_001058768 /// XM_233081 0006406 // mRNA export from nucleus // not recorded /// 0046784 // intronless viral mRNA export from host nucleus // not recorded 0000346 // transcription export complex // not recorded /// 0000347 // THO complex // not recorded /// 0000445 // THO complex part of transcription export complex // not recorded 0005515 // protein binding // not recorded 1382141_at BI291928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291928 /DB_XREF=gi:14951929 /DB_XREF=UI-R-DN0-ciu-o-11-0-UI.s1 /CLONE=UI-R-DN0-ciu-o-11-0-UI /FEA=EST /CNT=6 /TID=Rn.62545.1 /TIER=ConsEnd /STK=1 /UG=Rn.62545 /UG_TITLE=ESTs, Highly similar to T17453 ERG-associated protein ESET - mouse (M.musculus) BI291928 SET domain, bifurcated 1 Setdb1 689883 XM_002726023 /// XM_002729082 0001833 // inner cell mass cell proliferation // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation 1382142_at AI029975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029975 /DB_XREF=gi:3247801 /DB_XREF=UI-R-C0-jr-c-11-0-UI.s1 /CLONE=UI-R-C0-jr-c-11-0-UI /FEA=EST /CNT=6 /TID=Rn.3724.1 /TIER=ConsEnd /STK=1 /UG=Rn.3724 /UG_TITLE=ESTs AI029975 1382143_at AA964898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964898 /DB_XREF=gi:4279772 /DB_XREF=UI-R-C0-hb-e-05-0-UI.s1 /CLONE=UI-R-C0-hb-e-05-0-UI /FEA=EST /CNT=6 /TID=Rn.20250.1 /TIER=ConsEnd /STK=1 /UG=Rn.20250 /UG_TITLE=ESTs AA964898 FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived) Farp1 306183 NM_001107287 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0019898 // extrinsic to membrane // inferred from electronic annotation 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 1382144_at AW520527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520527 /DB_XREF=gi:7162905 /DB_XREF=UI-R-BJ0p-afx-e-04-0-UI.s1 /CLONE=UI-R-BJ0p-afx-e-04-0-UI /FEA=EST /CNT=6 /TID=Rn.23496.1 /TIER=ConsEnd /STK=1 /UG=Rn.23496 /UG_TITLE=ESTs, Weakly similar to T25443 hypothetical protein B0261.4 - Caenorhabditis elegans (C.elegans) AW520527 mitochondrial ribosomal protein L47 Mrpl47 294963 NM_001037183 0006412 // translation // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005761 // mitochondrial ribosome // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1382145_at AW531444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531444 /DB_XREF=gi:7173858 /DB_XREF=UI-R-BO1-aji-b-01-0-UI.s1 /CLONE=UI-R-BO1-aji-b-01-0-UI /FEA=EST /CNT=6 /TID=Rn.47708.1 /TIER=ConsEnd /STK=1 /UG=Rn.47708 /UG_TITLE=ESTs, Moderately similar to CTR4_HUMAN CATIONIC AMINO ACID TRANSPORTER-4 (CAT-4) (CAT4) (H.sapiens) AW531444 solute carrier family 7 (cationic amino acid transporter, y+ system), member 4 Slc7a4 303787 NM_001107078 0006810 // transport // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation 1382146_at BF412968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412968 /DB_XREF=gi:11400957 /DB_XREF=UI-R-CA0-boc-h-09-0-UI.s1 /CLONE=UI-R-CA0-boc-h-09-0-UI /FEA=EST /CNT=6 /TID=Rn.22880.1 /TIER=ConsEnd /STK=1 /UG=Rn.22880 /UG_TITLE=ESTs BF412968 tetraspanin 6 Tspan6 302313 NM_001100672 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation 1382147_at AI229479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229479 /DB_XREF=gi:4135445 /DB_XREF=EST226174 /CLONE=REMCG92 /FEA=EST /CNT=6 /TID=Rn.23050.1 /TIER=ConsEnd /STK=1 /UG=Rn.23050 /UG_TITLE=ESTs AI229479 transmembrane protein 132C Tmem132c 363915 XM_002724836 /// XM_002727968 1382148_at AA923980 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA923980 /DB_XREF=gi:4234072 /DB_XREF=UI-R-A1-dq-f-04-0-UI.s1 /CLONE=UI-R-A1-dq-f-04-0-UI /FEA=EST /CNT=6 /TID=Rn.24639.1 /TIER=ConsEnd /STK=1 /UG=Rn.24639 /UG_TITLE=ESTs AA923980 1382149_at BI293837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293837 /DB_XREF=gi:14955714 /DB_XREF=UI-R-DK0-cdl-e-03-0-UI.s1 /CLONE=UI-R-DK0-cdl-e-03-0-UI /FEA=EST /CNT=6 /TID=Rn.71946.1 /TIER=ConsEnd /STK=1 /UG=Rn.71946 /UG_TITLE=ESTs BI293837 1382150_at BG377042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377042 /DB_XREF=gi:13301514 /DB_XREF=UI-R-CS0-bvm-f-12-0-UI.s1 /CLONE=UI-R-CS0-bvm-f-12-0-UI /FEA=EST /CNT=6 /TID=Rn.12583.1 /TIER=ConsEnd /STK=1 /UG=Rn.12583 /UG_TITLE=ESTs, Weakly similar to T26786 hypothetical protein Y40B1B.8 - Caenorhabditis elegans (C.elegans) BG377042 solute carrier family 25, member 46 Slc25a46 291709 NM_001100515 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1382151_at AI145625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145625 /DB_XREF=gi:3667424 /DB_XREF=UI-R-BT0-ps-e-01-0-UI.s1 /CLONE=UI-R-BT0-ps-e-01-0-UI /FEA=EST /CNT=6 /TID=Rn.24324.1 /TIER=ConsEnd /STK=1 /UG=Rn.24324 /UG_TITLE=ESTs AI145625 TruB pseudouridine (psi) synthase homolog 1 (E. coli) Trub1 361775 NM_001012173 0001522 // pseudouridine synthesis // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0009451 // RNA modification // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0009982 // pseudouridine synthase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1382152_at AI234336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234336 /DB_XREF=gi:3818216 /DB_XREF=EST231024 /CLONE=RLUCZ75 /FEA=EST /CNT=6 /TID=Rn.16075.1 /TIER=ConsEnd /STK=1 /UG=Rn.16075 /UG_TITLE=ESTs AI234336 lysine (K)-specific demethylase 5B Kdm5b 304809 NM_001107177 0034720 // histone H3-K4 demethylation // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0034647 // histone demethylase activity (H3-trimethyl-K4 specific) // not recorded /// 0034648 // histone demethylase activity (H3-dimethyl-K4 specific) // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1382153_at AI171821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171821 /DB_XREF=gi:3711861 /DB_XREF=EST217806 /CLONE=RMUBR19 /FEA=EST /CNT=6 /TID=Rn.24032.1 /TIER=ConsEnd /STK=1 /UG=Rn.24032 /UG_TITLE=ESTs AI171821 C-type (calcium dependent, carbohydrate recognition domain) lectin, superfamily member 6 Clecsf6 474143 NM_001005899 0045087 // innate immune response // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1382154_at BI289625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289625 /DB_XREF=gi:14947390 /DB_XREF=UI-R-DK0-cfi-b-11-0-UI.s1 /CLONE=UI-R-DK0-cfi-b-11-0-UI /FEA=EST /CNT=6 /TID=Rn.18249.1 /TIER=ConsEnd /STK=1 /UG=Rn.18249 /UG_TITLE=ESTs BI289625 protein tyrosine phosphatase, non-receptor type 12 Ptpn12 117255 NM_057115 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0042246 // tissue regeneration // inferred from expression pattern 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // non-traceable author statement 0004721 // phosphoprotein phosphatase activity // not recorded /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded 1382155_at AA875055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875055 /DB_XREF=gi:4230936 /DB_XREF=UI-R-E0-cb-e-05-0-UI.s1 /CLONE=UI-R-E0-cb-e-05-0-UI /FEA=EST /CNT=6 /TID=Rn.32203.1 /TIER=ConsEnd /STK=1 /UG=Rn.32203 /UG_TITLE=ESTs, Weakly similar to T24578 hypothetical protein T06D8.5 - Caenorhabditis elegans (C.elegans) AA875055 COX15 homolog, cytochrome c oxidase assembly protein (yeast) Cox15 309391 NM_001033699 0006461 // protein complex assembly // inferred from electronic annotation /// 0006784 // heme a biosynthetic process // inferred from electronic annotation /// 0006784 // heme a biosynthetic process // not recorded /// 0008535 // respiratory chain complex IV assembly // not recorded 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0044429 // mitochondrial part // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004129 // cytochrome-c oxidase activity // not recorded 1382156_at BF409417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409417 /DB_XREF=gi:11397356 /DB_XREF=UI-R-CA1-blf-d-04-0-UI.s1 /CLONE=UI-R-CA1-blf-d-04-0-UI /FEA=EST /CNT=6 /TID=Rn.64554.1 /TIER=ConsEnd /STK=1 /UG=Rn.64554 /UG_TITLE=ESTs BF409417 0006810 // transport // inferred from electronic annotation /// 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay 1382157_s_at BF409417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409417 /DB_XREF=gi:11397356 /DB_XREF=UI-R-CA1-blf-d-04-0-UI.s1 /CLONE=UI-R-CA1-blf-d-04-0-UI /FEA=EST /CNT=6 /TID=Rn.64554.1 /TIER=ConsEnd /STK=1 /UG=Rn.64554 /UG_TITLE=ESTs BF409417 0006810 // transport // inferred from electronic annotation /// 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay 1382158_at BF557889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557889 /DB_XREF=gi:11667667 /DB_XREF=UI-R-C0-hf-e-04-0-UI.r1 /CLONE=UI-R-C0-hf-e-04-0-UI /FEA=EST /CNT=6 /TID=Rn.12986.1 /TIER=ConsEnd /STK=1 /UG=Rn.12986 /UG_TITLE=ESTs BF557889 zinc finger protein 202 Zfp202 500981 NM_001109290 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382159_at BF386740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386740 /DB_XREF=gi:11371564 /DB_XREF=UI-R-CA1-bbg-h-07-0-UI.s1 /CLONE=UI-R-CA1-bbg-h-07-0-UI /FEA=EST /CNT=6 /TID=Rn.24108.1 /TIER=ConsEnd /STK=1 /UG=Rn.24108 /UG_TITLE=ESTs BF386740 1382160_at AI236331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236331 /DB_XREF=gi:4136187 /DB_XREF=EST232893 /CLONE=ROVDE28 /FEA=EST /CNT=6 /TID=Rn.34251.1 /TIER=ConsEnd /STK=1 /UG=Rn.34251 /UG_TITLE=ESTs AI236331 1382161_at AA817668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817668 /DB_XREF=gi:4198200 /DB_XREF=UI-R-A0-aa-a-03-0-UI.s1 /CLONE=UI-R-A0-aa-a-03-0-UI /FEA=EST /CNT=6 /TID=Rn.16364.1 /TIER=ConsEnd /STK=1 /UG=Rn.16364 /UG_TITLE=ESTs, Moderately similar to MP10_HUMAN U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10 (H.sapiens) AA817668 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) Mphosph10 293828 NM_001106340 0006364 // rRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382162_at BG373568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373568 /DB_XREF=gi:13270105 /DB_XREF=UI-R-CV1-bse-c-12-0-UI.s1 /CLONE=UI-R-CV1-bse-c-12-0-UI /FEA=EST /CNT=6 /TID=Rn.23284.1 /TIER=ConsEnd /STK=1 /UG=Rn.23284 /UG_TITLE=ESTs BG373568 1382163_at BE118901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118901 /DB_XREF=gi:8511006 /DB_XREF=UI-R-BS1-azw-b-02-0-UI.s1 /CLONE=UI-R-BS1-azw-b-02-0-UI /FEA=EST /CNT=6 /TID=Rn.24503.1 /TIER=ConsEnd /STK=1 /UG=Rn.24503 /UG_TITLE=ESTs BE118901 GATA binding protein 3 Gata3 85471 NM_133293 0001709 // cell fate determination // inferred from electronic annotation /// 0001709 // cell fate determination // not recorded /// 0001806 // type IV hypersensitivity // inferred from expression pattern /// 0001823 // mesonephros development // inferred from electronic annotation /// 0001823 // mesonephros development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010332 // response to gamma radiation // inferred from expression pattern /// 0032753 // positive regulation of interleukin-4 production // inferred from electronic annotation /// 0032753 // positive regulation of interleukin-4 production // not recorded /// 0042035 // regulation of cytokine biosynthetic process // inferred from electronic annotation /// 0042035 // regulation of cytokine biosynthetic process // not recorded /// 0042421 // norepinephrine biosynthetic process // inferred from electronic annotation /// 0042421 // norepinephrine biosynthetic process // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043627 // response to estrogen stimulus // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048485 // sympathetic nervous system development // inferred from electronic annotation /// 0048485 // sympathetic nervous system development // not recorded /// 0048646 // anatomical structure formation involved in morphogenesis // inferred from electronic annotation /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from mutant phenotype /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382164_at AI236548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236548 /DB_XREF=gi:3830054 /DB_XREF=EST233110 /CLONE=ROVDH49 /FEA=EST /CNT=6 /TID=Rn.43669.1 /TIER=ConsEnd /STK=1 /UG=Rn.43669 /UG_TITLE=ESTs, Weakly similar to T20154 hypothetical protein C52E4.6a - Caenorhabditis elegans (C.elegans) AI236548 1382165_at BI288396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288396 /DB_XREF=gi:14944944 /DB_XREF=UI-R-DK0-cda-d-08-0-UI.s1 /CLONE=UI-R-DK0-cda-d-08-0-UI /FEA=EST /CNT=6 /TID=Rn.48906.1 /TIER=ConsEnd /STK=1 /UG=Rn.48906 /UG_TITLE=ESTs, Highly similar to 30kDa splicing factor (H.sapiens) BI288396 survival motor neuron domain containing 1 Smndc1 287768 NM_001025400 /// NM_001035234 0006397 // mRNA processing // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0015030 // Cajal body // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382166_at BF407425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407425 /DB_XREF=gi:11395400 /DB_XREF=UI-R-BJ2-bqs-a-11-0-UI.s1 /CLONE=UI-R-BJ2-bqs-a-11-0-UI /FEA=EST /CNT=6 /TID=Rn.64899.1 /TIER=ConsEnd /STK=1 /UG=Rn.64899 /UG_TITLE=ESTs, Highly similar to SIGNAL RECOGNITION PARTICLE RECEPTOR BETA SUBUNIT (M.musculus) BF407425 signal recognition particle receptor, B subunit Srprb 300965 NM_001013252 0006826 // iron ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0009925 // basal plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0045178 // basal part of cell // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0008199 // ferric iron binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction 1382167_at AW532179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532179 /DB_XREF=gi:7174593 /DB_XREF=UI-R-C4-alj-c-07-0-UI.s1 /CLONE=UI-R-C4-alj-c-07-0-UI /FEA=EST /CNT=6 /TID=Rn.47894.1 /TIER=ConsEnd /STK=1 /UG=Rn.47894 /UG_TITLE=ESTs AW532179 signaling threshold regulating transmembrane adaptor 1 Sit1 500449 NM_001024344 0050863 // regulation of T cell activation // inferred from electronic annotation /// 0050863 // regulation of T cell activation // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019900 // kinase binding // inferred from electronic annotation /// 0019900 // kinase binding // not recorded 1382168_at BI281217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281217 /DB_XREF=gi:14930728 /DB_XREF=UI-R-CT0s-cat-g-06-0-UI.s1 /CLONE=UI-R-CT0s-cat-g-06-0-UI /FEA=EST /CNT=6 /TID=Rn.22586.1 /TIER=ConsEnd /STK=1 /UG=Rn.22586 /UG_TITLE=ESTs BI281217 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) Elavl3 282824 NM_172324 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0017091 // AU-rich element binding // inferred from electronic annotation /// 0017091 // AU-rich element binding // not recorded 1382169_x_at BI281217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281217 /DB_XREF=gi:14930728 /DB_XREF=UI-R-CT0s-cat-g-06-0-UI.s1 /CLONE=UI-R-CT0s-cat-g-06-0-UI /FEA=EST /CNT=6 /TID=Rn.22586.1 /TIER=ConsEnd /STK=1 /UG=Rn.22586 /UG_TITLE=ESTs BI281217 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) Elavl3 282824 NM_172324 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0017091 // AU-rich element binding // inferred from electronic annotation /// 0017091 // AU-rich element binding // not recorded 1382170_at AA799427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799427 /DB_XREF=gi:2862382 /DB_XREF=EST188924 /CLONE=RHEAA91 /FEA=EST /CNT=6 /TID=Rn.24906.1 /TIER=ConsEnd /STK=1 /UG=Rn.24906 /UG_TITLE=ESTs AA799427 similar to UPF0308 protein C9orf21 LOC498685 498685 NM_001109114 0016491 // oxidoreductase activity // inferred from electronic annotation 1382171_at AI454310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454310 /DB_XREF=gi:4292831 /DB_XREF=UI-R-E0-cg-f-11-0-UI.s1 /CLONE=UI-R-E0-cg-f-11-0-UI /FEA=EST /CNT=6 /TID=Rn.7747.1 /TIER=ConsEnd /STK=1 /UG=Rn.7747 /UG_TITLE=ESTs AI454310 TSC22 domain family, member 2 Tsc22d2 499624 NM_001191960 /// XM_001057984 /// XM_574948 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006970 // response to osmotic stress // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1382172_at AI228660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228660 /DB_XREF=gi:3812547 /DB_XREF=EST225355 /CLONE=RBRCX73 /FEA=EST /CNT=6 /TID=Rn.24345.1 /TIER=ConsEnd /STK=1 /UG=Rn.24345 /UG_TITLE=ESTs AI228660 1382173_at BF283569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283569 /DB_XREF=gi:11214639 /DB_XREF=EST448160 /CLONE=RGIEE08 /FEA=EST /CNT=6 /TID=Rn.22306.1 /TIER=ConsEnd /STK=1 /UG=Rn.22306 /UG_TITLE=ESTs BF283569 1382174_at AI227996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227996 /DB_XREF=gi:4135301 /DB_XREF=EST224691 /CLONE=RBRCO56 /FEA=EST /CNT=6 /TID=Rn.24823.1 /TIER=ConsEnd /STK=1 /UG=Rn.24823 /UG_TITLE=ESTs AI227996 1382175_at AW534129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534129 /DB_XREF=gi:7176543 /DB_XREF=UI-R-C4-alp-e-04-0-UI.s1 /CLONE=UI-R-C4-alp-e-04-0-UI /FEA=EST /CNT=6 /TID=Rn.22883.1 /TIER=ConsEnd /STK=1 /UG=Rn.22883 /UG_TITLE=ESTs AW534129 Wilms tumor 1 associated protein Wtap 499020 NM_001113542 /// NM_001113543 /// NM_001113544 1382176_at AI454666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454666 /DB_XREF=gi:4295321 /DB_XREF=UI-R-BT0-qk-a-02-0-UI.s1 /CLONE=UI-R-BT0-qk-a-02-0-UI /FEA=EST /CNT=6 /TID=Rn.25079.1 /TIER=ConsEnd /STK=1 /UG=Rn.25079 /UG_TITLE=ESTs, Weakly similar to KRP1_RAT Kelch-related protein 1 (Kel-like protein 23) (Sarcosin) (R.norvegicus) AI454666 Kelch-like 11 (Drosophila) Klhl11 287706 NM_001105838 0005515 // protein binding // inferred from electronic annotation 1382177_at BF415064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415064 /DB_XREF=gi:11403053 /DB_XREF=UI-R-BJ2-bou-c-03-0-UI.s1 /CLONE=UI-R-BJ2-bou-c-03-0-UI /FEA=EST /CNT=6 /TID=Rn.15386.1 /TIER=ConsEnd /STK=1 /UG=Rn.15386 /UG_TITLE=ESTs BF415064 1382178_at BI275934 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275934 /DB_XREF=gi:14920353 /DB_XREF=UI-R-CX0-bxi-b-12-0-UI.s1 /CLONE=UI-R-CX0-bxi-b-12-0-UI /FEA=EST /CNT=6 /TID=Rn.16898.1 /TIER=ConsEnd /STK=1 /UG=Rn.16898 /UG_TITLE=ESTs BI275934 family with sequence similarity 83, member H Fam83h 362937 NM_001130565 1382179_at AW534743 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534743 /DB_XREF=gi:7177157 /DB_XREF=UI-R-BS0-anv-e-06-0-UI.s1 /CLONE=UI-R-BS0-anv-e-06-0-UI /FEA=EST /CNT=6 /TID=Rn.12697.1 /TIER=ConsEnd /STK=1 /UG=Rn.12697 /UG_TITLE=ESTs AW534743 retinol dehydrogenase 14 (all-trans/9-cis/11-cis) Rdh14 500629 NM_001109276 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1382180_at BI295425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295425 /DB_XREF=gi:14958859 /DB_XREF=UI-R-DK0-cer-f-07-0-UI.s1 /CLONE=UI-R-DK0-cer-f-07-0-UI /FEA=EST /CNT=6 /TID=Rn.23048.1 /TIER=ConsEnd /STK=1 /UG=Rn.23048 /UG_TITLE=ESTs, Highly similar to CRAD_MOUSE DEATH DOMAIN CONTAINING PROTEIN CRADD (CASPASE AND RIP ADAPTATOR WITH DEATH DOMAIN) (RIP ASSOCIATED PROTEIN WITH A DEATH DOMAIN) (M.musculus) BI295425 1382181_at AI555069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555069 /DB_XREF=gi:4487432 /DB_XREF=UI-R-C2p-qn-b-09-0-UI.s1 /CLONE=UI-R-C2p-qn-b-09-0-UI /FEA=EST /CNT=6 /TID=Rn.17968.1 /TIER=ConsEnd /STK=1 /UG=Rn.17968 /UG_TITLE=ESTs AI555069 pigeon homolog (Drosophila) Pion 311984 NM_001107845 1382182_at AI501494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501494 /DB_XREF=gi:4399345 /DB_XREF=UI-R-C2p-sb-h-03-0-UI.s1 /CLONE=UI-R-C2p-sb-h-03-0-UI /FEA=EST /CNT=6 /TID=Rn.20988.1 /TIER=ConsEnd /STK=1 /UG=Rn.20988 /UG_TITLE=ESTs, Highly similar to HXC9 MOUSE HOMEOBOX PROTEIN HOX-C9 (M.musculus) AI501494 homeobox C9 Hoxc9 368178 NM_001100907 /// XM_347335 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048706 // embryonic skeletal system development // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1382183_at AA849479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849479 /DB_XREF=gi:2937019 /DB_XREF=EST192246 /CLONE=RMUAF30 /FEA=EST /CNT=6 /TID=Rn.21436.1 /TIER=ConsEnd /STK=1 /UG=Rn.21436 /UG_TITLE=ESTs AA849479 1382184_at AI410062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410062 /DB_XREF=gi:4253566 /DB_XREF=EST238355 /CLONE=RPLDH61 /FEA=EST /CNT=6 /TID=Rn.23441.1 /TIER=ConsEnd /STK=1 /UG=Rn.23441 /UG_TITLE=ESTs AI410062 Fas apoptotic inhibitory molecule 3 Faim3 548326 NM_001014843 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1382185_at BG377259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377259 /DB_XREF=gi:13301731 /DB_XREF=UI-R-CU0-bux-d-03-0-UI.s1 /CLONE=UI-R-CU0-bux-d-03-0-UI /FEA=EST /CNT=6 /TID=Rn.41670.1 /TIER=ConsEnd /STK=1 /UG=Rn.41670 /UG_TITLE=ESTs, Weakly similar to 1917150A collagen:SUBUNIT=alpha1:ISOTYPE=VIII (R.norvegicus) BG377259 C1q and tumor necrosis factor related protein 2 C1qtnf2 497886 NM_001191918 /// XM_001067870 /// XM_573071 0000187 // activation of MAPK activity // not recorded /// 0045725 // positive regulation of glycogen biosynthetic process // not recorded /// 0046321 // positive regulation of fatty acid oxidation // not recorded /// 0046326 // positive regulation of glucose import // not recorded /// 0051260 // protein homooligomerization // not recorded 0005615 // extracellular space // not recorded 0005102 // receptor binding // not recorded 1382186_a_at AI136314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136314 /DB_XREF=gi:3637091 /DB_XREF=UI-R-C2p-oa-f-06-0-UI.s1 /CLONE=UI-R-C2p-oa-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.18370.2 /TIER=ConsEnd /STK=0 /UG=Rn.18370 /UG_TITLE=ESTs AI136314 G patch domain containing 4 Gpatch4 295228 NM_001024979 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation 1382187_at AI136314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136314 /DB_XREF=gi:3637091 /DB_XREF=UI-R-C2p-oa-f-06-0-UI.s1 /CLONE=UI-R-C2p-oa-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.18370.2 /TIER=ConsEnd /STK=0 /UG=Rn.18370 /UG_TITLE=ESTs AI136314 G patch domain containing 4 Gpatch4 295228 NM_001024979 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation 1382188_at BF397703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397703 /DB_XREF=gi:11382687 /DB_XREF=UI-R-BS2-bed-f-07-0-UI.s1 /CLONE=UI-R-BS2-bed-f-07-0-UI /FEA=EST /CNT=6 /TID=Rn.18370.1 /TIER=ConsEnd /STK=1 /UG=Rn.18370 /UG_TITLE=ESTs BF397703 G patch domain containing 4 Gpatch4 295228 NM_001024979 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation 1382189_at AI574779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI574779 /DB_XREF=gi:4544775 /DB_XREF=UI-R-G0-ub-f-07-0-UI.s1 /CLONE=UI-R-G0-ub-f-07-0-UI /FEA=EST /CNT=6 /TID=Rn.13678.1 /TIER=ConsEnd /STK=1 /UG=Rn.13678 /UG_TITLE=ESTs AI574779 syndecan 2 Sdc2 25615 NM_013082 0001666 // response to hypoxia // inferred from expression pattern /// 0031000 // response to caffeine // inferred from expression pattern /// 0042060 // wound healing // inferred from expression pattern /// 0048813 // dendrite morphogenesis // inferred from expression pattern 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 1382190_at BF405725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405725 /DB_XREF=gi:11393700 /DB_XREF=UI-R-CA1-bje-c-13-0-UI.s1 /CLONE=UI-R-CA1-bje-c-13-0-UI /FEA=EST /CNT=6 /TID=Rn.22979.1 /TIER=ConsEnd /STK=1 /UG=Rn.22979 /UG_TITLE=ESTs BF405725 MAS-related GPR, member F Mrgprf 266762 NM_153722 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1382191_at AI228848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228848 /DB_XREF=gi:4135389 /DB_XREF=EST225543 /CLONE=RBRDA36 /FEA=EST /CNT=6 /TID=Rn.24369.1 /TIER=ConsEnd /STK=1 /UG=Rn.24369 /UG_TITLE=ESTs, Highly similar to JC5517 GuRNA helicase II binding protein (H.sapiens) AI228848 protein inhibitor of activated STAT, 1 Pias1 300772 NM_001106829 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0033235 // positive regulation of protein sumoylation // not recorded /// 0033235 // positive regulation of protein sumoylation // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from mutant phenotype /// 0051152 // positive regulation of smooth muscle cell differentiation // inferred from mutant phenotype /// 0065004 // protein-DNA complex assembly // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019789 // SUMO ligase activity // not recorded /// 0019789 // SUMO ligase activity // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation 1382192_at AI179260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179260 /DB_XREF=gi:3729898 /DB_XREF=EST222952 /CLONE=RSPCE42 /FEA=EST /CNT=6 /TID=Rn.22111.1 /TIER=ConsEnd /STK=1 /UG=Rn.22111 /UG_TITLE=ESTs AI179260 lymphatic vessel endothelial hyaluronan receptor 1 Lyve1 293186 NM_001106286 0006027 // glycosaminoglycan catabolic process // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // not recorded 0005886 // plasma membrane // not recorded 0004888 // transmembrane receptor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // not recorded 1382193_at BI294188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294188 /DB_XREF=gi:14956408 /DB_XREF=UI-R-DK0-cdv-f-08-0-UI.s1 /CLONE=UI-R-DK0-cdv-f-08-0-UI /FEA=EST /CNT=6 /TID=Rn.24858.1 /TIER=ConsEnd /STK=1 /UG=Rn.24858 /UG_TITLE=ESTs BI294188 CDGSH iron sulfur domain 2 Cisd2 295457 NM_001191608 /// XM_001077768 /// XM_215704 0000422 // mitochondrion degradation // not recorded /// 0010259 // multicellular organismal aging // not recorded /// 0010506 // regulation of autophagy // not recorded 0005741 // mitochondrial outer membrane // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // not recorded 1382194_at AI234173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234173 /DB_XREF=gi:3818053 /DB_XREF=EST230861 /CLONE=RLUCW36 /FEA=EST /CNT=6 /TID=Rn.24788.1 /TIER=ConsEnd /STK=1 /UG=Rn.24788 /UG_TITLE=ESTs AI234173 Coagulation factor VIII, procoagulant component F8 302470 NM_183331 0007155 // cell adhesion // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from direct assay /// 0007597 // blood coagulation, intrinsic pathway // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0031093 // platelet alpha granule lumen // not recorded 0004252 // serine-type endopeptidase activity // inferred from direct assay /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382195_at AA943021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943021 /DB_XREF=gi:3102937 /DB_XREF=EST198520 /CLONE=RBRAD77 /FEA=EST /CNT=6 /TID=Rn.32501.1 /TIER=ConsEnd /STK=1 /UG=Rn.32501 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) AA943021 Zinc finger protein 771 Znf771 308992 XM_219346 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1382196_at BI293505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293505 /DB_XREF=gi:14955064 /DB_XREF=UI-R-DK0-cdr-c-05-0-UI.s1 /CLONE=UI-R-DK0-cdr-c-05-0-UI /FEA=EST /CNT=6 /TID=Rn.24881.1 /TIER=ConsEnd /STK=1 /UG=Rn.24881 /UG_TITLE=ESTs, Weakly similar to T21880 hypothetical protein F36G9.3 - Caenorhabditis elegans (C.elegans) BI293505 similar to hypothetical protein ET RGD1307394 360667 NM_001108308 1382197_at AA955648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955648 /DB_XREF=gi:4238043 /DB_XREF=UI-R-E1-fc-e-08-0-UI.s1 /CLONE=UI-R-E1-fc-e-08-0-UI /FEA=EST /CNT=6 /TID=Rn.25197.1 /TIER=ConsEnd /STK=1 /UG=Rn.25197 /UG_TITLE=ESTs, Moderately similar to RHOD MOUSE RHO-RELATED GTP-BINDING PROTEIN RHOD (M.musculus) AA955648 ras homolog gene family, member D Rhod 293660 NM_001106323 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded 1382198_at AI233267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233267 /DB_XREF=gi:3817147 /DB_XREF=EST229955 /CLONE=RKIDC95 /FEA=EST /CNT=6 /TID=Rn.17876.1 /TIER=ConsEnd /STK=1 /UG=Rn.17876 /UG_TITLE=ESTs AI233267 pumilio homolog 2 (Drosophila) Pum2 298874 NM_001106715 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382199_at BF288776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288776 /DB_XREF=gi:11219756 /DB_XREF=EST453277 /CLONE=RGIGW28 /FEA=EST /CNT=6 /TID=Rn.41412.1 /TIER=ConsEnd /STK=1 /UG=Rn.41412 /UG_TITLE=ESTs BF288776 1382200_at AW917547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917547 /DB_XREF=gi:8083300 /DB_XREF=EST348851 /CLONE=RGIEF17 /FEA=EST /CNT=6 /TID=Rn.3337.2 /TIER=ConsEnd /STK=1 /UG=Rn.3337 /UG_TITLE=ESTs AW917547 centromere protein V Cenpv 501702 XM_002724504 /// XM_577104 0008152 // metabolic process // inferred from electronic annotation /// 0031508 // centromeric heterochromatin formation // not recorded /// 0032467 // positive regulation of cytokinesis // not recorded /// 0033044 // regulation of chromosome organization // not recorded /// 0034508 // centromere complex assembly // not recorded 0000776 // kinetochore // not recorded /// 0005634 // nucleus // not recorded /// 0051233 // spindle midzone // not recorded 0016846 // carbon-sulfur lyase activity // inferred from electronic annotation 1382201_at AA926250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926250 /DB_XREF=gi:4237441 /DB_XREF=UI-R-A1-ev-a-07-0-UI.s1 /CLONE=UI-R-A1-ev-a-07-0-UI /FEA=EST /CNT=6 /TID=Rn.8105.1 /TIER=ConsEnd /STK=1 /UG=Rn.8105 /UG_TITLE=ESTs AA926250 unc-5 homolog C (C. elegans) Unc5c 362049 NM_199407 0006915 // apoptosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0030334 // regulation of cell migration // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005042 // netrin receptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382202_at AI102199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102199 /DB_XREF=gi:4134067 /DB_XREF=EST211488 /CLONE=RBRCA47 /FEA=EST /CNT=6 /TID=Rn.24342.1 /TIER=ConsEnd /STK=1 /UG=Rn.24342 /UG_TITLE=ESTs AI102199 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1382203_at AI549010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549010 /DB_XREF=gi:4466498 /DB_XREF=UI-R-C3-tv-d-11-0-UI.s1 /CLONE=UI-R-C3-tv-d-11-0-UI /FEA=EST /CNT=6 /TID=Rn.25360.1 /TIER=ConsEnd /STK=1 /UG=Rn.25360 /UG_TITLE=ESTs AI549010 growth differentiation factor 1 /// LAG1 homolog, ceramide synthase 1 Gdf1 /// Lass1 290658 /// 306351 NM_001044230 /// NM_001044240 0040007 // growth // inferred from electronic annotation /// 0046513 // ceramide biosynthetic process // inferred from electronic annotation /// 0046513 // ceramide biosynthetic process // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008083 // growth factor activity // inferred from electronic annotation /// 0050291 // sphingosine N-acyltransferase activity // inferred from electronic annotation /// 0050291 // sphingosine N-acyltransferase activity // not recorded 1382204_at AA996749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996749 /DB_XREF=gi:4280514 /DB_XREF=UI-R-C0-hg-c-11-0-UI.s1 /CLONE=UI-R-C0-hg-c-11-0-UI /FEA=EST /CNT=6 /TID=Rn.23393.1 /TIER=ConsEnd /STK=1 /UG=Rn.23393 /UG_TITLE=ESTs AA996749 thyrotropin-releasing hormone degrading enzyme Trhde 366894 NM_001108991 0006508 // proteolysis // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004177 // aminopeptidase activity // traceable author statement /// 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382205_at AW527509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527509 /DB_XREF=gi:7169923 /DB_XREF=UI-R-BO1-ajv-b-03-0-UI.s1 /CLONE=UI-R-BO1-ajv-b-03-0-UI /FEA=EST /CNT=6 /TID=Rn.41179.1 /TIER=ConsEnd /STK=1 /UG=Rn.41179 /UG_TITLE=ESTs AW527509 1382206_a_at BF398063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398063 /DB_XREF=gi:11383048 /DB_XREF=UI-R-BS2-beg-h-02-0-UI.s1 /CLONE=UI-R-BS2-beg-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.35524.2 /TIER=ConsEnd /STK=1 /UG=Rn.35524 /UG_TITLE=ESTs, Highly similar to T09226 A kinase anchor protein AKAP-KL isoform 2 - mouse (M.musculus) BF398063 A kinase (PRKA) anchor protein 2 Akap2 298024 NM_001011974 0007015 // actin filament organization // not recorded /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // not recorded /// 0008104 // protein localization // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0051018 // protein kinase A binding // not recorded 1382207_at BE097085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097085 /DB_XREF=gi:8488016 /DB_XREF=UI-R-BO1-apt-a-02-0-UI.s1 /CLONE=UI-R-BO1-apt-a-02-0-UI /FEA=EST /CNT=6 /TID=Rn.24014.1 /TIER=ConsEnd /STK=1 /UG=Rn.24014 /UG_TITLE=ESTs BE097085 1382208_at AA943846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943846 /DB_XREF=gi:3103762 /DB_XREF=EST199345 /CLONE=RBRAQ41 /FEA=EST /CNT=6 /TID=Rn.7651.1 /TIER=ConsEnd /STK=1 /UG=Rn.7651 /UG_TITLE=ESTs, Weakly similar to calcium-independent alpha-latrotoxin receptor homolog 3; lectomedin-3 (Rattus norvegicus) (R.norvegicus) AA943846 1382209_at BI280344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280344 /DB_XREF=gi:14929045 /DB_XREF=UI-R-DE0-cag-h-08-0-UI.s1 /CLONE=UI-R-DE0-cag-h-08-0-UI /FEA=EST /CNT=6 /TID=Rn.40841.1 /TIER=ConsEnd /STK=1 /UG=Rn.40841 /UG_TITLE=ESTs, Weakly similar to T08802 hypothetical protein DKFZp586D0623.1 (H.sapiens) BI280344 coiled coil domain containing 28B Ccdc28b 682445 NM_001134689 1382210_at BE117392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117392 /DB_XREF=gi:8509497 /DB_XREF=UI-R-BS1-ayi-c-07-0-UI.s1 /CLONE=UI-R-BS1-ayi-c-07-0-UI /FEA=EST /CNT=6 /TID=Rn.28039.1 /TIER=ConsEnd /STK=1 /UG=Rn.28039 /UG_TITLE=ESTs BE117392 hypothetical LOC302495 LOC302495 302495 NM_001106950 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1382211_at AI602542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602542 /DB_XREF=gi:4611703 /DB_XREF=UI-R-AE0-xi-c-03-0-UI.s1 /CLONE=UI-R-AE0-xi-c-03-0-UI /FEA=EST /CNT=14 /TID=Rn.23411.1 /TIER=ConsEnd /STK=1 /UG=Rn.23411 /UG_TITLE=ESTs AI602542 1382212_at AI385201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385201 /DB_XREF=gi:4197983 /DB_XREF=UI-R-E0-ce-c-08-0-UI.s1 /CLONE=UI-R-E0-ce-c-08-0-UI /FEA=EST /CNT=11 /TID=Rn.19027.1 /TIER=ConsEnd /STK=1 /UG=Rn.19027 /UG_TITLE=ESTs AI385201 1382213_at AI535527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535527 /DB_XREF=gi:4449662 /DB_XREF=UI-R-C3-sq-h-11-0-UI.s1 /CLONE=UI-R-C3-sq-h-11-0-UI /FEA=EST /CNT=10 /TID=Rn.22480.1 /TIER=ConsEnd /STK=1 /UG=Rn.22480 /UG_TITLE=ESTs AI535527 dipeptidylpeptidase 8 Dpp8 315758 NM_001108159 0006508 // proteolysis // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0016020 // membrane // inferred from electronic annotation 0008236 // serine-type peptidase activity // inferred from electronic annotation 1382214_at AI029201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029201 /DB_XREF=gi:4296921 /DB_XREF=UI-R-C0-ip-c-06-0-UI.s1 /CLONE=UI-R-C0-ip-c-06-0-UI /FEA=EST /CNT=8 /TID=Rn.41547.1 /TIER=ConsEnd /STK=1 /UG=Rn.41547 /UG_TITLE=ESTs AI029201 NHL repeat containing 2 Nhlrc2 307986 NM_001107444 0045454 // cell redox homeostasis // inferred from electronic annotation 1382215_at AA875331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875331 /DB_XREF=gi:4231211 /DB_XREF=UI-R-E0-cn-h-11-0-UI.s1 /CLONE=UI-R-E0-cn-h-11-0-UI /FEA=EST /CNT=8 /TID=Rn.2882.1 /TIER=ConsEnd /STK=1 /UG=Rn.2882 /UG_TITLE=ESTs AA875331 similar to Transcription initiation factor TFIID 105 kDa subunit (TAFII-105) RGD1562997 291773 XM_001073245 /// XM_002728524 0006352 // transcription initiation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005669 // transcription factor TFIID complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016986 // transcription initiation factor activity // inferred from electronic annotation 1382216_at BF283004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283004 /DB_XREF=gi:11214074 /DB_XREF=EST447595 /CLONE=RGIDW18 /FEA=EST /CNT=8 /TID=Rn.43369.1 /TIER=ConsEnd /STK=1 /UG=Rn.43369 /UG_TITLE=ESTs BF283004 gem (nuclear organelle) associated protein 6 Gemin6 362688 NM_001009466 0000245 // spliceosome assembly // inferred from electronic annotation /// 0000387 // spliceosomal snRNP assembly // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0016604 // nuclear body // inferred from electronic annotation /// 0016604 // nuclear body // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382217_at AI009517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009517 /DB_XREF=gi:3223349 /DB_XREF=EST203968 /CLONE=RHEBQ04 /FEA=EST /CNT=8 /TID=Rn.9495.1 /TIER=ConsEnd /STK=1 /UG=Rn.9495 /UG_TITLE=ESTs AI009517 1382218_at AI012175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012175 /DB_XREF=gi:4133588 /DB_XREF=EST206626 /CLONE=RPLAT61 /FEA=EST /CNT=7 /TID=Rn.18576.1 /TIER=ConsEnd /STK=1 /UG=Rn.18576 /UG_TITLE=ESTs AI012175 hypothetical LOC298077 RGD1305807 298077 NM_001025276 1382219_at AA945904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945904 /DB_XREF=gi:4132636 /DB_XREF=EST201403 /CLONE=RLUAW74 /FEA=EST /CNT=7 /TID=Rn.7988.1 /TIER=ConsEnd /STK=1 /UG=Rn.7988 /UG_TITLE=ESTs AA945904 La ribonucleoprotein domain family, member 1B Larp1b 310348 NM_001014036 0006605 // protein targeting // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0030318 // melanocyte differentiation // inferred from electronic annotation /// 0032400 // melanosome localization // inferred from electronic annotation /// 0043473 // pigmentation // inferred from electronic annotation 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017022 // myosin binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from electronic annotation /// 0031489 // myosin V binding // inferred from electronic annotation /// 0051010 // microtubule plus-end binding // inferred from electronic annotation 1382220_at AI180454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180454 /DB_XREF=gi:4135248 /DB_XREF=EST224200 /CLONE=RSPCX89 /FEA=EST /CNT=7 /TID=Rn.17318.1 /TIER=ConsEnd /STK=1 /UG=Rn.17318 /UG_TITLE=ESTs AI180454 1382221_at AI176944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176944 /DB_XREF=gi:3727582 /DB_XREF=EST220550 /CLONE=ROVBY90 /FEA=EST /CNT=7 /TID=Rn.15880.1 /TIER=ConsEnd /STK=1 /UG=Rn.15880 /UG_TITLE=ESTs AI176944 1382222_at BI293607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293607 /DB_XREF=gi:14955262 /DB_XREF=UI-R-DK0-cds-e-09-0-UI.s1 /CLONE=UI-R-DK0-cds-e-09-0-UI /FEA=EST /CNT=7 /TID=Rn.20991.1 /TIER=ConsEnd /STK=1 /UG=Rn.20991 /UG_TITLE=ESTs BI293607 transmembrane protein 163 Tmem163 360839 NM_001110763 1382223_at AA874952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA874952 /DB_XREF=gi:4230834 /DB_XREF=UI-R-E0-ci-g-03-0-UI.s1 /CLONE=UI-R-E0-ci-g-03-0-UI /FEA=EST /CNT=6 /TID=Rn.3185.1 /TIER=ConsEnd /STK=1 /UG=Rn.3185 /UG_TITLE=ESTs AA874952 zinc finger, MYM-type 4 Zmym4 313598 NM_001107982 0008270 // zinc ion binding // inferred from electronic annotation 1382224_at AW522830 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522830 /DB_XREF=gi:7165215 /DB_XREF=UI-R-BO0-ahn-c-05-0-UI.s1 /CLONE=UI-R-BO0-ahn-c-05-0-UI /FEA=EST /CNT=6 /TID=Rn.65582.1 /TIER=ConsEnd /STK=1 /UG=Rn.65582 /UG_TITLE=ESTs, Moderately similar to I58311 HMG-box containing protein 1 - rat (R.norvegicus) AW522830 1382225_at BF284510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284510 /DB_XREF=gi:11215580 /DB_XREF=EST449101 /CLONE=RGIER45 /FEA=EST /CNT=6 /TID=Rn.25185.1 /TIER=ConsEnd /STK=1 /UG=Rn.25185 /UG_TITLE=ESTs BF284510 1382226_at AI502443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502443 /DB_XREF=gi:4400294 /DB_XREF=UI-R-C0-jo-f-07-0-UI.s1 /CLONE=UI-R-C0-jo-f-07-0-UI /FEA=EST /CNT=6 /TID=Rn.8943.1 /TIER=ConsEnd /STK=1 /UG=Rn.8943 /UG_TITLE=ESTs AI502443 Similar to RNA binding motif, single stranded interacting protein 3 isoform 1 LOC680726 680726 XM_001061329 /// XM_002727143 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1382227_at AW533203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533203 /DB_XREF=gi:7175617 /DB_XREF=UI-R-BU0-ana-a-05-0-UI.s1 /CLONE=UI-R-BU0-ana-a-05-0-UI /FEA=EST /CNT=6 /TID=Rn.55533.1 /TIER=ConsEnd /STK=1 /UG=Rn.55533 /UG_TITLE=ESTs AW533203 1-acylglycerol-3-phosphate O-acyltransferase 3 Agpat3 294324 NM_001106378 0008152 // metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0008415 // acyltransferase activity // inferred from electronic annotation /// 0046027 // phospholipid:diacylglycerol acyltransferase activity // not recorded 1382228_at BE095590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095590 /DB_XREF=gi:8486521 /DB_XREF=UI-R-BT1-amg-f-11-0-UI.s1 /CLONE=UI-R-BT1-amg-f-11-0-UI /FEA=EST /CNT=6 /TID=Rn.24101.1 /TIER=ConsEnd /STK=1 /UG=Rn.24101 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) BE095590 rCG41562-like LOC100359945 100359945 XM_002729052 1382229_at AA998269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998269 /DB_XREF=gi:4288691 /DB_XREF=UI-R-C0-hz-a-07-0-UI.s1 /CLONE=UI-R-C0-hz-a-07-0-UI /FEA=EST /CNT=6 /TID=Rn.22815.1 /TIER=ConsEnd /STK=1 /UG=Rn.22815 /UG_TITLE=ESTs, Weakly similar to S12207 hypothetical protein (M.musculus) AA998269 1382230_at BI296330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296330 /DB_XREF=gi:14960660 /DB_XREF=UI-R-DK0-cez-b-05-0-UI.s1 /CLONE=UI-R-DK0-cez-b-05-0-UI /FEA=EST /CNT=6 /TID=Rn.3709.1 /TIER=ConsEnd /STK=1 /UG=Rn.3709 /UG_TITLE=ESTs BI296330 kelch domain containing 8A Klhdc8a 305096 NM_001100683 1382231_at BF417649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417649 /DB_XREF=gi:11405638 /DB_XREF=UI-R-CN0-blq-e-12-0-UI.s1 /CLONE=UI-R-CN0-blq-e-12-0-UI /FEA=EST /CNT=6 /TID=Rn.18899.1 /TIER=ConsEnd /STK=1 /UG=Rn.18899 /UG_TITLE=ESTs BF417649 1382232_at AI454322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454322 /DB_XREF=gi:4292915 /DB_XREF=UI-R-E0-ci-a-02-0-UI.s1 /CLONE=UI-R-E0-ci-a-02-0-UI /FEA=EST /CNT=6 /TID=Rn.20343.1 /TIER=ConsEnd /STK=1 /UG=Rn.20343 /UG_TITLE=ESTs AI454322 1382233_a_at AI030449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030449 /DB_XREF=gi:3248275 /DB_XREF=UI-R-C0-ji-d-12-0-UI.s1 /CLONE=UI-R-C0-ji-d-12-0-UI /FEA=EST /CNT=6 /TID=Rn.18503.1 /TIER=ConsEnd /STK=1 /UG=Rn.18503 /UG_TITLE=ESTs, Moderately similar to methyltransferase related protein (M.musculus) AI030449 similar to tRNA (guanine-N(7)-)-methyltransferase (tRNA(m7G46)-methyltransferase) (Methyltransferase-like protein 1) LOC679091 679091 XM_001054797 0006400 // tRNA modification // inferred from electronic annotation 0008176 // tRNA (guanine-N7-)-methyltransferase activity // inferred from electronic annotation 1382234_at BI286950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286950 /DB_XREF=gi:14942090 /DB_XREF=UI-R-CT0s-can-a-11-0-UI.s1 /CLONE=UI-R-CT0s-can-a-11-0-UI /FEA=EST /CNT=6 /TID=Rn.2260.1 /TIER=ConsEnd /STK=1 /UG=Rn.2260 /UG_TITLE=ESTs BI286950 Pyruvate dehydrogenase complex, component X Pdhx 311254 NM_001044242 0008152 // metabolic process // inferred from electronic annotation /// 0010510 // regulation of acetyl-CoA biosynthetic process from pyruvate // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation 1382235_at BF549700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549700 /DB_XREF=gi:11659430 /DB_XREF=UI-R-A0-ax-b-06-0-UI.r1 /CLONE=UI-R-A0-ax-b-06-0-UI /FEA=EST /CNT=6 /TID=Rn.16491.1 /TIER=ConsEnd /STK=1 /UG=Rn.16491 /UG_TITLE=ESTs BF549700 similar to hypothetical protein FLJ30596 RGD1306809 365699 NM_001044252 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0003951 // NAD+ kinase activity // inferred from electronic annotation 1382236_at BI288538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288538 /DB_XREF=gi:14945223 /DB_XREF=UI-R-DK0-cdg-a-12-0-UI.s1 /CLONE=UI-R-DK0-cdg-a-12-0-UI /FEA=EST /CNT=6 /TID=Rn.11480.1 /TIER=ConsEnd /STK=1 /UG=Rn.11480 /UG_TITLE=ESTs BI288538 1382237_at AA900012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900012 /DB_XREF=gi:4232502 /DB_XREF=UI-R-E0-dh-a-06-0-UI.s1 /CLONE=UI-R-E0-dh-a-06-0-UI /FEA=EST /CNT=6 /TID=Rn.36528.1 /TIER=ConsEnd /STK=1 /UG=Rn.36528 /UG_TITLE=ESTs, Moderately similar to ZN08_HUMAN ZINC FINGER PROTEIN 8 (H.sapiens) AA900012 zinc finger protein 128-like LOC100360337 100360337 XM_002725494 /// XM_002728668 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1382238_at AW534965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534965 /DB_XREF=gi:7177379 /DB_XREF=UI-R-BS0-any-e-11-0-UI.s1 /CLONE=UI-R-BS0-any-e-11-0-UI /FEA=EST /CNT=6 /TID=Rn.35314.1 /TIER=ConsEnd /STK=1 /UG=Rn.35314 /UG_TITLE=ESTs, Weakly similar to T22490 hypothetical protein Y37A1B.1 - Caenorhabditis elegans (C.elegans) AW534965 cell division cycle and apoptosis regulator 1 Ccar1 361849 NM_001108535 0008380 // RNA splicing // not recorded /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005794 // Golgi apparatus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1382239_at AW434700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434700 /DB_XREF=gi:6966007 /DB_XREF=UI-R-BJ0p-afz-b-09-0-UI.s1 /CLONE=UI-R-BJ0p-afz-b-09-0-UI /FEA=EST /CNT=6 /TID=Rn.21781.1 /TIER=ConsEnd /STK=1 /UG=Rn.21781 /UG_TITLE=ESTs, Weakly similar to MYOSIN LIGHT CHAIN KINASE, SKELETAL MUSCLE (R.norvegicus) AW434700 myosin light chain kinase 3 Mylk3 291926 NM_001110810 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1382240_at AI029959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029959 /DB_XREF=gi:3247785 /DB_XREF=UI-R-C0-ja-h-11-0-UI.s1 /CLONE=UI-R-C0-ja-h-11-0-UI /FEA=EST /CNT=6 /TID=Rn.17234.1 /TIER=ConsEnd /STK=1 /UG=Rn.17234 /UG_TITLE=ESTs AI029959 1382241_at AA942848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA942848 /DB_XREF=gi:3102764 /DB_XREF=EST198347 /CLONE=RBRAB51 /FEA=EST /CNT=6 /TID=Rn.7458.2 /TIER=ConsEnd /STK=1 /UG=Rn.7458 /UG_TITLE=ESTs AA942848 Solute carrier family 10 (sodium/bile acid cotransporter family), member 5 Slc10a5 310230 NM_001025280 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008508 // bile acid:sodium symporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation 1382242_at BE105280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105280 /DB_XREF=gi:8497382 /DB_XREF=UI-R-BX0-asb-f-03-0-UI.s1 /CLONE=UI-R-BX0-asb-f-03-0-UI /FEA=EST /CNT=6 /TID=Rn.28985.1 /TIER=ConsEnd /STK=1 /UG=Rn.28985 /UG_TITLE=ESTs BE105280 zinc finger protein 451 Zfp451 316312 NM_001033705 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1382243_at BE120628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120628 /DB_XREF=gi:8512733 /DB_XREF=UI-R-CA0-bav-g-02-0-UI.s1 /CLONE=UI-R-CA0-bav-g-02-0-UI /FEA=EST /CNT=6 /TID=Rn.21747.1 /TIER=ConsEnd /STK=1 /UG=Rn.21747 /UG_TITLE=ESTs BE120628 1382244_at AI409325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409325 /DB_XREF=gi:4252829 /DB_XREF=EST237617 /CLONE=RKIDM74 /FEA=EST /CNT=6 /TID=Rn.23221.1 /TIER=ConsEnd /STK=1 /UG=Rn.23221 /UG_TITLE=ESTs AI409325 Quinolinate phosphoribosyltransferase Qprt 293504 NM_001009646 0008152 // metabolic process // inferred from electronic annotation /// 0009435 // NAD biosynthetic process // inferred from direct assay /// 0009435 // NAD biosynthetic process // inferred from electronic annotation /// 0019363 // pyridine nucleotide biosynthetic process // inferred from electronic annotation /// 0019674 // NAD metabolic process // not recorded /// 0034213 // quinolinate catabolic process // inferred from electronic annotation /// 0034213 // quinolinate catabolic process // not recorded /// 0046874 // quinolinate metabolic process // inferred from direct assay /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0051259 // protein oligomerization // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004514 // nicotinate-nucleotide diphosphorylase (carboxylating) activity // inferred from direct assay /// 0004514 // nicotinate-nucleotide diphosphorylase (carboxylating) activity // not recorded /// 0004514 // nicotinate-nucleotide diphosphorylase (carboxylating) activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1382245_at BF397964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397964 /DB_XREF=gi:11382949 /DB_XREF=UI-R-BS2-bef-f-11-0-UI.s1 /CLONE=UI-R-BS2-bef-f-11-0-UI /FEA=EST /CNT=6 /TID=Rn.43139.1 /TIER=ConsEnd /STK=1 /UG=Rn.43139 /UG_TITLE=ESTs BF397964 1382246_at AI172596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172596 /DB_XREF=gi:3712636 /DB_XREF=UI-R-C2p-oh-d-03-0-UI.s1 /CLONE=UI-R-C2p-oh-d-03-0-UI /FEA=EST /CNT=6 /TID=Rn.22447.1 /TIER=ConsEnd /STK=1 /UG=Rn.22447 /UG_TITLE=ESTs AI172596 1382247_a_at BE111497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111497 /DB_XREF=gi:8503602 /DB_XREF=UI-R-BJ1-avb-e-05-0-UI.s1 /CLONE=UI-R-BJ1-avb-e-05-0-UI /FEA=EST /CNT=1 /TID=Rn.15013.2 /TIER=ConsEnd /STK=1 /UG=Rn.15013 /UG_TITLE=ESTs BE111497 1382248_at BI292769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292769 /DB_XREF=gi:14953604 /DB_XREF=UI-R-DO0-cix-c-06-0-UI.s1 /CLONE=UI-R-DO0-cix-c-06-0-UI /FEA=EST /CNT=6 /TID=Rn.41223.1 /TIER=ConsEnd /STK=1 /UG=Rn.41223 /UG_TITLE=ESTs BI292769 similar to leucine rich repeat containing 45 LOC688318 688318 NM_001127571 1382249_at AI171858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171858 /DB_XREF=gi:3711898 /DB_XREF=EST217845 /CLONE=RMUBR62 /FEA=EST /CNT=5 /TID=Rn.55280.1 /TIER=ConsEnd /STK=1 /UG=Rn.55280 /UG_TITLE=ESTs AI171858 1382250_at AW526660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526660 /DB_XREF=gi:7169074 /DB_XREF=UI-R-BO1-ajd-e-10-0-UI.s1 /CLONE=UI-R-BO1-ajd-e-10-0-UI /FEA=EST /CNT=5 /TID=Rn.53869.1 /TIER=ConsEnd /STK=1 /UG=Rn.53869 /UG_TITLE=ESTs AW526660 1382251_at BE120157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120157 /DB_XREF=gi:8512262 /DB_XREF=UI-R-CA0-bap-c-04-0-UI.s1 /CLONE=UI-R-CA0-bap-c-04-0-UI /FEA=EST /CNT=5 /TID=Rn.48628.1 /TIER=ConsEnd /STK=1 /UG=Rn.48628 /UG_TITLE=ESTs, Highly similar to SRP1 (M.musculus) BE120157 karyopherin alpha 1 Kpna1 288064 NM_198726 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation 1382252_at BE099808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099808 /DB_XREF=gi:8491688 /DB_XREF=UI-R-BJ1-atq-e-03-0-UI.s1 /CLONE=UI-R-BJ1-atq-e-03-0-UI /FEA=EST /CNT=5 /TID=Rn.9295.1 /TIER=ConsEnd /STK=1 /UG=Rn.9295 /UG_TITLE=ESTs BE099808 1382253_at BF419062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419062 /DB_XREF=gi:11407051 /DB_XREF=UI-R-BJ2-bqn-b-04-0-UI.s1 /CLONE=UI-R-BJ2-bqn-b-04-0-UI /FEA=EST /CNT=5 /TID=Rn.8757.1 /TIER=ConsEnd /STK=1 /UG=Rn.8757 /UG_TITLE=ESTs BF419062 family with sequence similarity 118, member B Fam118b 315549 NM_001025283 1382254_at BI295944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295944 /DB_XREF=gi:14959896 /DB_XREF=UI-R-DK0-cfc-e-12-0-UI.s1 /CLONE=UI-R-DK0-cfc-e-12-0-UI /FEA=EST /CNT=5 /TID=Rn.11781.1 /TIER=ConsEnd /STK=1 /UG=Rn.11781 /UG_TITLE=ESTs BI295944 1382255_at BE110785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110785 /DB_XREF=gi:8502855 /DB_XREF=UI-R-BJ1-avd-e-09-0-UI.s1 /CLONE=UI-R-BJ1-avd-e-09-0-UI /FEA=EST /CNT=5 /TID=Rn.7264.1 /TIER=ConsEnd /STK=1 /UG=Rn.7264 /UG_TITLE=ESTs BE110785 1382256_at AI011445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011445 /DB_XREF=gi:4133421 /DB_XREF=EST205896 /CLONE=ROVAV06 /FEA=EST /CNT=5 /TID=Rn.39606.1 /TIER=ConsEnd /STK=1 /UG=Rn.39606 /UG_TITLE=ESTs AI011445 1382257_at AI044813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044813 /DB_XREF=gi:3291632 /DB_XREF=UI-R-C1-ki-c-04-0-UI.s1 /CLONE=UI-R-C1-ki-c-04-0-UI /FEA=EST /CNT=5 /TID=Rn.16026.1 /TIER=ConsEnd /STK=1 /UG=Rn.16026 /UG_TITLE=ESTs, Highly similar to DCMSOP orotidine-5-phosphate decarboxylase (M.musculus) AI044813 1382258_at AW521384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521384 /DB_XREF=gi:7163762 /DB_XREF=UI-R-BO0-agl-h-04-0-UI.s1 /CLONE=UI-R-BO0-agl-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.24633.1 /TIER=ConsEnd /STK=1 /UG=Rn.24633 /UG_TITLE=ESTs AW521384 Rho-guanine nucleotide exchange factor Rgnef 361882 NM_001108542 0021955 // central nervous system neuron axonogenesis // inferred from electronic annotation /// 0021955 // central nervous system neuron axonogenesis // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0060052 // neurofilament cytoskeleton organization // inferred from electronic annotation /// 0060052 // neurofilament cytoskeleton organization // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1382259_a_at BF287228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287228 /DB_XREF=gi:11218284 /DB_XREF=EST451805 /CLONE=RGIGD11 /FEA=EST /CNT=5 /TID=Rn.45817.1 /TIER=ConsEnd /STK=1 /UG=Rn.45817 /UG_TITLE=ESTs, Weakly similar to A44437 regenerating liver inhibitory factor RLIF-1 - rat (R.norvegicus) BF287228 RBSC-skeletrophin LOC474147 474147 XM_001052967 /// XM_001052968 /// XM_002726666 /// XM_002729580 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382260_at AW531471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531471 /DB_XREF=gi:7173885 /DB_XREF=UI-R-BO1-aji-d-06-0-UI.s1 /CLONE=UI-R-BO1-aji-d-06-0-UI /FEA=EST /CNT=5 /TID=Rn.6256.1 /TIER=ConsEnd /STK=1 /UG=Rn.6256 /UG_TITLE=ESTs AW531471 1382261_at AW534331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534331 /DB_XREF=gi:7176745 /DB_XREF=UI-R-C4-alo-b-03-0-UI.s1 /CLONE=UI-R-C4-alo-b-03-0-UI /FEA=EST /CNT=5 /TID=Rn.23883.1 /TIER=ConsEnd /STK=1 /UG=Rn.23883 /UG_TITLE=ESTs, Weakly similar to K02E10.2.p (Caenorhabditis elegans) (C.elegans) AW534331 similar to CG8841-PA RGD1311422 287822 XM_001081678 /// XM_213523 0005515 // protein binding // not recorded 1382262_at BE111891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111891 /DB_XREF=gi:8503996 /DB_XREF=UI-R-BS1-azu-b-11-0-UI.s1 /CLONE=UI-R-BS1-azu-b-11-0-UI /FEA=EST /CNT=5 /TID=Rn.43318.1 /TIER=ConsEnd /STK=1 /UG=Rn.43318 /UG_TITLE=ESTs BE111891 1382263_at AI511280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511280 /DB_XREF=gi:4416979 /DB_XREF=UI-R-C3-sv-c-09-0-UI.s1 /CLONE=UI-R-C3-sv-c-09-0-UI /FEA=EST /CNT=5 /TID=Rn.34668.1 /TIER=ConsEnd /STK=1 /UG=Rn.34668 /UG_TITLE=ESTs AI511280 outer dense fiber of sperm tails 2-like Odf2l 685425 NM_001134708 1382264_at AI714243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI714243 /DB_XREF=gi:5018043 /DB_XREF=UI-R-AF1-aat-d-11-0-UI.s1 /CLONE=UI-R-AF1-aat-d-11-0-UI /FEA=EST /CNT=5 /TID=Rn.23549.1 /TIER=ConsEnd /STK=1 /UG=Rn.23549 /UG_TITLE=ESTs AI714243 CREB binding protein Crebbp 54244 NM_133381 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from direct assay /// 0016573 // histone acetylation // inferred from direct assay /// 0016573 // histone acetylation // not recorded /// 0016573 // histone acetylation // inferred from electronic annotation /// 0016573 // histone acetylation // inferred from sequence or structural similarity /// 0018076 // N-terminal peptidyl-lysine acetylation // not recorded /// 0018076 // N-terminal peptidyl-lysine acetylation // inferred from electronic annotation /// 0030718 // germ-line stem cell maintenance // not recorded /// 0030718 // germ-line stem cell maintenance // inferred from electronic annotation /// 0033261 // regulation of S phase // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from direct assay /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0000123 // histone acetyltransferase complex // not recorded /// 0000123 // histone acetyltransferase complex // inferred from electronic annotation /// 0000940 // condensed chromosome outer kinetochore // not recorded /// 0000940 // condensed chromosome outer kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred by curator /// 0005667 // transcription factor complex // inferred from direct assay /// 0005667 // transcription factor complex // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0016604 // nuclear body // not recorded /// 0016604 // nuclear body // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0002039 // p53 binding // not recorded /// 0002039 // p53 binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003712 // transcription cofactor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0003713 // transcription coactivator activity // traceable author statement /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from direct assay /// 0004402 // histone acetyltransferase activity // not recorded /// 0004402 // histone acetyltransferase activity // traceable author statement /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016407 // acetyltransferase activity // not recorded /// 0016407 // acetyltransferase activity // inferred from electronic annotation /// 0016407 // acetyltransferase activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0042975 // peroxisome proliferator activated receptor binding // inferred from direct assay /// 0046332 // SMAD binding // inferred from physical interaction /// 0051577 // MyoD binding // not recorded /// 0051577 // MyoD binding // inferred from electronic annotation /// 0051577 // MyoD binding // inferred from sequence or structural similarity 1382265_at AI070061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070061 /DB_XREF=gi:3396312 /DB_XREF=UI-R-C1-ln-h-11-0-UI.s1 /CLONE=UI-R-C1-ln-h-11-0-UI /FEA=EST /CNT=5 /TID=Rn.29873.1 /TIER=ConsEnd /STK=1 /UG=Rn.29873 /UG_TITLE=ESTs AI070061 granule cell antiserum positive 14 Gcap14 306306 XM_001061993 /// XM_224672 1382266_at AI500893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI500893 /DB_XREF=gi:4398744 /DB_XREF=UI-R-C2p-rr-g-07-0-UI.s1 /CLONE=UI-R-C2p-rr-g-07-0-UI /FEA=EST /CNT=5 /TID=Rn.41446.1 /TIER=ConsEnd /STK=1 /UG=Rn.41446 /UG_TITLE=ESTs AI500893 G protein-coupled receptor 146 Gpr146 498153 NM_001109062 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 1382267_at BF390450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390450 /DB_XREF=gi:11375296 /DB_XREF=UI-R-CA1-bch-b-12-0-UI.s1 /CLONE=UI-R-CA1-bch-b-12-0-UI /FEA=EST /CNT=5 /TID=Rn.11487.1 /TIER=ConsEnd /STK=1 /UG=Rn.11487 /UG_TITLE=ESTs BF390450 four jointed box 1 (Drosophila) Fjx1 366140 NM_001108955 0005615 // extracellular space // not recorded 1382268_at AW526712 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526712 /DB_XREF=gi:7169126 /DB_XREF=UI-R-BT1-ake-b-10-0-UI.s1 /CLONE=UI-R-BT1-ake-b-10-0-UI /FEA=EST /CNT=5 /TID=Rn.46295.1 /TIER=ConsEnd /STK=1 /UG=Rn.46295 /UG_TITLE=ESTs, Moderately similar to A42915 type II cAMP-dependent protein kinase RII anchoring protein (H.sapiens) AW526712 A kinase (PRKA) anchor protein 13 Akap13 293024 NM_001106271 0006915 // apoptosis // not recorded /// 0008104 // protein localization // traceable author statement /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0010611 // regulation of cardiac muscle hypertrophy // inferred from mutant phenotype /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0045859 // regulation of protein kinase activity // inferred from mutant phenotype /// 0051168 // nuclear export // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from physical interaction /// 0032947 // protein complex scaffold // inferred from mutant phenotype /// 0051018 // protein kinase A binding // inferred from mutant phenotype 1382269_at BM388183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388183 /DB_XREF=gi:18188236 /DB_XREF=UI-R-DM1-cjz-i-21-0-UI.s1 /CLONE=UI-R-DM1-cjz-i-21-0-UI /FEA=EST /CNT=5 /TID=Rn.76692.1 /TIER=ConsEnd /STK=1 /UG=Rn.76692 /UG_TITLE=ESTs BM388183 cyclin M2 Cnnm2 294014 NM_001011942 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1382270_at BM384387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384387 /DB_XREF=gi:18184440 /DB_XREF=UI-R-CN1-cjn-c-08-0-UI.s1 /CLONE=UI-R-CN1-cjn-c-08-0-UI /FEA=EST /CNT=5 /TID=Rn.24140.1 /TIER=ConsEnd /STK=1 /UG=Rn.24140 /UG_TITLE=ESTs BM384387 1382271_at AA955815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955815 /DB_XREF=gi:4238210 /DB_XREF=UI-R-E1-fd-e-07-0-UI.s1 /CLONE=UI-R-E1-fd-e-07-0-UI /FEA=EST /CNT=5 /TID=Rn.8940.1 /TIER=ConsEnd /STK=1 /UG=Rn.8940 /UG_TITLE=ESTs AA955815 ribosomal protein S6 kinase, polypeptide 5 Rps6ka5 314384 NM_001108048 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0006950 // response to stress // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0009605 // response to external stimulus // not recorded /// 0016572 // histone phosphorylation // not recorded /// 0042221 // response to chemical stimulus // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1382272_at BE349785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE349785 /DB_XREF=gi:9261638 /DB_XREF=hq43a12.x1 /CLONE=IMAGE:3122110 /FEA=EST /CNT=5 /TID=Rn.24235.1 /TIER=ConsEnd /STK=1 /UG=Rn.24235 /UG_TITLE=ESTs BE349785 angiotensin II receptor-associated protein Agtrap 298646 NM_001007654 0001666 // response to hypoxia // inferred from expression pattern /// 0007165 // signal transduction // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008217 // regulation of blood pressure // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0004945 // angiotensin type II receptor activity // inferred from electronic annotation /// 0004945 // angiotensin type II receptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382273_at BF283609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283609 /DB_XREF=gi:11214679 /DB_XREF=EST448200 /CLONE=RGIEE55 /FEA=EST /CNT=5 /TID=Rn.8179.1 /TIER=ConsEnd /STK=1 /UG=Rn.8179 /UG_TITLE=ESTs BF283609 Bcl2-like 14 (apoptosis facilitator) Bcl2l14 500348 NM_001024338 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0043229 // intracellular organelle // inferred from electronic annotation /// 0043229 // intracellular organelle // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382274_at AA819288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819288 /DB_XREF=gi:4228427 /DB_XREF=UI-R-A0-aw-c-06-0-UI.s1 /CLONE=UI-R-A0-aw-c-06-0-UI /FEA=EST /CNT=5 /TID=Rn.16737.1 /TIER=ConsEnd /STK=1 /UG=Rn.16737 /UG_TITLE=ESTs AA819288 retinoic acid receptor responder (tazarotene induced) 1 Rarres1 310486 NM_001014790 0004872 // receptor activity // inferred from electronic annotation 1382275_at AI236989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236989 /DB_XREF=gi:4136276 /DB_XREF=EST233551 /CLONE=ROVDN30 /FEA=EST /CNT=5 /TID=Rn.25198.1 /TIER=ConsEnd /STK=1 /UG=Rn.25198 /UG_TITLE=ESTs, Weakly similar to A29938 MAK11 protein - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AI236989 PAK1 interacting protein 1 Pak1ip1 361232 NM_001037356 1382276_at BE120171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120171 /DB_XREF=gi:8512276 /DB_XREF=UI-R-CA0-bap-d-06-0-UI.s1 /CLONE=UI-R-CA0-bap-d-06-0-UI /FEA=EST /CNT=5 /TID=Rn.45957.1 /TIER=ConsEnd /STK=1 /UG=Rn.45957 /UG_TITLE=ESTs BE120171 0006470 // protein dephosphorylation // inferred from electronic annotation 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1382277_at AA894336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894336 /DB_XREF=gi:3021215 /DB_XREF=EST198139 /CLONE=RSPAW88 /FEA=EST /CNT=5 /TID=Rn.13529.1 /TIER=ConsEnd /STK=1 /UG=Rn.13529 /UG_TITLE=ESTs AA894336 1382278_at BI278180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278180 /DB_XREF=gi:14924773 /DB_XREF=UI-R-CZ0-bye-d-06-0-UI.s1 /CLONE=UI-R-CZ0-bye-d-06-0-UI /FEA=EST /CNT=5 /TID=Rn.21549.1 /TIER=ConsEnd /STK=1 /UG=Rn.21549 /UG_TITLE=ESTs BI278180 1382279_at BE097598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097598 /DB_XREF=gi:8488529 /DB_XREF=UI-R-BO1-apz-e-07-0-UI.s1 /CLONE=UI-R-BO1-apz-e-07-0-UI /FEA=EST /CNT=5 /TID=Rn.41868.1 /TIER=ConsEnd /STK=1 /UG=Rn.41868 /UG_TITLE=ESTs BE097598 Rho-related BTB domain containing 2 Rhobtb2 306004 NM_001013133 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1382280_at BF290998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290998 /DB_XREF=gi:11222068 /DB_XREF=EST455589 /CLONE=RGIIH34 /FEA=EST /CNT=5 /TID=Rn.24696.1 /TIER=ConsEnd /STK=1 /UG=Rn.24696 /UG_TITLE=ESTs, Moderately similar to UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 PRECURSOR (R.norvegicus) BF290998 ubiquinol cytochrome c reductase core protein 2 Uqcrc2 293448 NM_001006970 0006508 // proteolysis // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005750 // mitochondrial respiratory chain complex III // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1382281_at BI296136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296136 /DB_XREF=gi:14960273 /DB_XREF=UI-R-DK0-cew-g-04-0-UI.s1 /CLONE=UI-R-DK0-cew-g-04-0-UI /FEA=EST /CNT=5 /TID=Rn.21867.1 /TIER=ConsEnd /STK=1 /UG=Rn.21867 /UG_TITLE=ESTs BI296136 1382282_at BF390321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390321 /DB_XREF=gi:11375167 /DB_XREF=UI-R-CA1-bcn-e-10-0-UI.s1 /CLONE=UI-R-CA1-bcn-e-10-0-UI /FEA=EST /CNT=5 /TID=Rn.55396.1 /TIER=ConsEnd /STK=1 /UG=Rn.55396 /UG_TITLE=ESTs BF390321 Lix1 homolog (mouse)-like Lix1l 499677 NM_001024303 1382283_at BF283711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283711 /DB_XREF=gi:11214781 /DB_XREF=EST448302 /CLONE=RGIEF77 /FEA=EST /CNT=5 /TID=Rn.7914.1 /TIER=ConsEnd /STK=1 /UG=Rn.7914 /UG_TITLE=ESTs BF283711 WAS/WASL interacting protein family, member 1 Wipf1 117538 NM_057192 0030036 // actin cytoskeleton organization // inferred from mutant phenotype /// 0030048 // actin filament-based movement // inferred from electronic annotation /// 0030048 // actin filament-based movement // not recorded /// 0046827 // positive regulation of protein export from nucleus // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // inferred from direct assay /// 0015629 // actin cytoskeleton // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1382284_at AW525175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525175 /DB_XREF=gi:7167560 /DB_XREF=UI-R-BJ0p-aio-f-07-0-UI.s1 /CLONE=UI-R-BJ0p-aio-f-07-0-UI /FEA=EST /CNT=5 /TID=Rn.45730.1 /TIER=ConsEnd /STK=1 /UG=Rn.45730 /UG_TITLE=ESTs, Moderately similar to NEK3_MOUSE SERINETHREONINE-PROTEIN KINASE NEK3 (NIMA-RELATED PROTEIN KINASE 3) (M.musculus) AW525175 similar to NIMA (never in mitosis gene a)-related expressed kinase 5 /// NIMA (never in mitosis gene a)-related kinase 3 LOC685440 /// Nek3 306576 /// 685440 XM_001065115 /// XM_002728429 /// XM_224971 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1382285_at BM383851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383851 /DB_XREF=gi:18183904 /DB_XREF=UI-R-DM1-ckc-c-16-0-UI.s1 /CLONE=UI-R-DM1-ckc-c-16-0-UI /FEA=EST /CNT=5 /TID=Rn.25171.1 /TIER=ConsEnd /STK=1 /UG=Rn.25171 /UG_TITLE=ESTs, Moderately similar to alpha-N-acetylgalactosaminidase (M.musculus) BM383851 N-acetyl galactosaminidase, alpha Naga 315165 NM_001012120 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016052 // carbohydrate catabolic process // not recorded /// 0016052 // carbohydrate catabolic process // inferred from sequence or structural similarity /// 0016052 // carbohydrate catabolic process // inferred from electronic annotation /// 0019377 // glycolipid catabolic process // not recorded /// 0019377 // glycolipid catabolic process // inferred from sequence or structural similarity /// 0019377 // glycolipid catabolic process // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0008456 // alpha-N-acetylgalactosaminidase activity // not recorded /// 0008456 // alpha-N-acetylgalactosaminidase activity // inferred from sequence or structural similarity /// 0008456 // alpha-N-acetylgalactosaminidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043169 // cation binding // inferred from electronic annotation 1382286_at AA965275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965275 /DB_XREF=gi:4280149 /DB_XREF=UI-R-C0-hd-c-11-0-UI.s1 /CLONE=UI-R-C0-hd-c-11-0-UI /FEA=EST /CNT=5 /TID=Rn.12060.1 /TIER=ConsEnd /STK=1 /UG=Rn.12060 /UG_TITLE=ESTs AA965275 1382287_at BG375343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375343 /DB_XREF=gi:13299815 /DB_XREF=UI-R-CV1-bsz-c-10-0-UI.s1 /CLONE=UI-R-CV1-bsz-c-10-0-UI /FEA=EST /CNT=5 /TID=Rn.64133.1 /TIER=ConsEnd /STK=1 /UG=Rn.64133 /UG_TITLE=ESTs, Weakly similar to S43417 RNADNA-binding protein - mouse (M.musculus) BG375343 ribonucleic acid binding protein S1 Rnps1 287113 NM_001011890 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382288_at AI172553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172553 /DB_XREF=gi:3712593 /DB_XREF=UI-R-C2p-nz-c-06-0-UI.s1 /CLONE=UI-R-C2p-nz-c-06-0-UI /FEA=EST /CNT=5 /TID=Rn.24059.1 /TIER=ConsEnd /STK=1 /UG=Rn.24059 /UG_TITLE=ESTs AI172553 thyroid hormone receptor interactor 4 Trip4 315769 NM_001134981 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0016922 // ligand-dependent nuclear receptor binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1382289_at BI291954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291954 /DB_XREF=gi:14951981 /DB_XREF=UI-R-DN0-civ-f-05-0-UI.s1 /CLONE=UI-R-DN0-civ-f-05-0-UI /FEA=EST /CNT=5 /TID=Rn.25467.1 /TIER=ConsEnd /STK=1 /UG=Rn.25467 /UG_TITLE=ESTs BI291954 1382290_at AI717186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717186 /DB_XREF=gi:5034442 /DB_XREF=UI-R-Y0-acm-b-05-0-UI.s1 /CLONE=UI-R-Y0-acm-b-05-0-UI /FEA=EST /CNT=5 /TID=Rn.21246.1 /TIER=ConsEnd /STK=1 /UG=Rn.21246 /UG_TITLE=ESTs AI717186 methyltransferase like 10 Mettl10 361664 NM_001108504 0008152 // metabolic process // inferred from electronic annotation 0008168 // methyltransferase activity // inferred from electronic annotation 1382291_at AI454332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454332 /DB_XREF=gi:4292985 /DB_XREF=UI-R-E0-ci-d-10-0-UI.s1 /CLONE=UI-R-E0-ci-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.23094.1 /TIER=ConsEnd /STK=1 /UG=Rn.23094 /UG_TITLE=ESTs, Weakly similar to SX10 RAT TRANSCRIPTION FACTOR SOX-10 (R.norvegicus) AI454332 1382292_at BF285343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285343 /DB_XREF=gi:11216413 /DB_XREF=EST449934 /CLONE=RGIFD82 /FEA=EST /CNT=5 /TID=Rn.24908.1 /TIER=ConsEnd /STK=1 /UG=Rn.24908 /UG_TITLE=ESTs BF285343 1382293_at BG377109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377109 /DB_XREF=gi:13301621 /DB_XREF=UI-R-CU0-bvb-a-08-0-UI.s1 /CLONE=UI-R-CU0-bvb-a-08-0-UI /FEA=EST /CNT=5 /TID=Rn.24723.1 /TIER=ConsEnd /STK=1 /UG=Rn.24723 /UG_TITLE=ESTs BG377109 transmembrane protein 213 Tmem213 689748 XM_001071866 /// XM_002726344 1382294_at AI576111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576111 /DB_XREF=gi:4560487 /DB_XREF=UI-R-Y0-va-d-10-0-UI.s1 /CLONE=UI-R-Y0-va-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.38894.1 /TIER=ConsEnd /STK=1 /UG=Rn.38894 /UG_TITLE=ESTs AI576111 1382295_at AW529753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529753 /DB_XREF=gi:7172167 /DB_XREF=UI-R-BU0-amr-h-08-0-UI.s1 /CLONE=UI-R-BU0-amr-h-08-0-UI /FEA=EST /CNT=5 /TID=Rn.25393.1 /TIER=ConsEnd /STK=1 /UG=Rn.25393 /UG_TITLE=ESTs AW529753 1382296_at BF291041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291041 /DB_XREF=gi:11222111 /DB_XREF=EST455632 /CLONE=RGIIH82 /FEA=EST /CNT=5 /TID=Rn.16839.1 /TIER=ConsEnd /STK=1 /UG=Rn.16839 /UG_TITLE=ESTs BF291041 1382297_x_at AI555789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555789 /DB_XREF=gi:4488152 /DB_XREF=UI-R-C2p-qz-b-05-0-UI.s1 /CLONE=UI-R-C2p-qz-b-05-0-UI /FEA=EST /CNT=5 /TID=Rn.22234.2 /TIER=ConsEnd /STK=1 /UG=Rn.22234 /UG_TITLE=ESTs AI555789 proline rich 12 Prr12 361569 XM_001080668 /// XM_341852 0003677 // DNA binding // inferred from electronic annotation 1382298_at BM385955 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385955 /DB_XREF=gi:18186008 /DB_XREF=UI-R-DN1-ckf-k-24-0-UI.s1 /CLONE=UI-R-DN1-ckf-k-24-0-UI /FEA=EST /CNT=5 /TID=Rn.40234.1 /TIER=ConsEnd /STK=1 /UG=Rn.40234 /UG_TITLE=ESTs BM385955 1382299_at AW914657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW914657 /DB_XREF=gi:8080335 /DB_XREF=EST345961 /CLONE=RGIAL33 /FEA=EST /CNT=5 /TID=Rn.16190.1 /TIER=ConsEnd /STK=1 /UG=Rn.16190 /UG_TITLE=ESTs AW914657 1382300_at BF284236 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284236 /DB_XREF=gi:11215306 /DB_XREF=EST448827 /CLONE=RGIEN20 /FEA=EST /CNT=5 /TID=Rn.6523.1 /TIER=ConsEnd /STK=1 /UG=Rn.6523 /UG_TITLE=ESTs BF284236 transportin 3 Tnpo3 296954 NM_001106587 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382301_at BE120448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120448 /DB_XREF=gi:8512553 /DB_XREF=UI-R-CA0-bam-e-11-0-UI.s1 /CLONE=UI-R-CA0-bam-e-11-0-UI /FEA=EST /CNT=5 /TID=Rn.53568.1 /TIER=ConsEnd /STK=1 /UG=Rn.53568 /UG_TITLE=ESTs BE120448 1382302_at AI044633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044633 /DB_XREF=gi:3291494 /DB_XREF=UI-R-C1-jx-a-07-0-UI.s1 /CLONE=UI-R-C1-jx-a-07-0-UI /FEA=EST /CNT=5 /TID=Rn.25013.1 /TIER=ConsEnd /STK=1 /UG=Rn.25013 /UG_TITLE=ESTs AI044633 zinc finger protein, subfamily 1A, 4 LOC100361923 100361923 XM_002726855 /// XM_002729774 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1382303_at AA996943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996943 /DB_XREF=gi:4280707 /DB_XREF=UI-R-C0-hj-h-06-0-UI.s1 /CLONE=UI-R-C0-hj-h-06-0-UI /FEA=EST /CNT=5 /TID=Rn.22981.1 /TIER=ConsEnd /STK=1 /UG=Rn.22981 /UG_TITLE=ESTs, Moderately similar to T00359 hypothetical protein KIAA0680 (H.sapiens) AA996943 phosphatase and actin regulator 1 Phactr1 306844 NM_214457 0042325 // regulation of phosphorylation // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation 0003779 // actin binding // traceable author statement /// 0003779 // actin binding // inferred from electronic annotation /// 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from electronic annotation /// 0008157 // protein phosphatase 1 binding // inferred from direct assay 1382304_at AW528823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528823 /DB_XREF=gi:7171237 /DB_XREF=UI-R-BT1-akj-a-10-0-UI.s1 /CLONE=UI-R-BT1-akj-a-10-0-UI /FEA=EST /CNT=5 /TID=Rn.6583.1 /TIER=ConsEnd /STK=1 /UG=Rn.6583 /UG_TITLE=ESTs AW528823 1382305_at AI236814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236814 /DB_XREF=gi:3830320 /DB_XREF=EST233376 /CLONE=ROVDK85 /FEA=EST /CNT=5 /TID=Rn.25541.1 /TIER=ConsEnd /STK=1 /UG=Rn.25541 /UG_TITLE=ESTs AI236814 1382306_at AW919478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919478 /DB_XREF=gi:8085273 /DB_XREF=EST350782 /CLONE=RGIFX72 /FEA=EST /CNT=5 /TID=Rn.28200.1 /TIER=ConsEnd /STK=1 /UG=Rn.28200 /UG_TITLE=ESTs AW919478 ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) Arih1 300756 NM_001013108 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382307_at BF406594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406594 /DB_XREF=gi:11394569 /DB_XREF=UI-R-BJ2-bpu-h-08-0-UI.s1 /CLONE=UI-R-BJ2-bpu-h-08-0-UI /FEA=EST /CNT=5 /TID=Rn.41969.1 /TIER=ConsEnd /STK=1 /UG=Rn.41969 /UG_TITLE=ESTs, Weakly similar to S68418 protein phosphatase 1M chain M110 isoform - rat (R.norvegicus) BF406594 protein phosphatase 1, regulatory (inhibitor) subunit 12A Ppp1r12a 116670 NM_053890 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0046822 // regulation of nucleocytoplasmic transport // inferred from electronic annotation /// 0046822 // regulation of nucleocytoplasmic transport // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1382308_at AI717668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717668 /DB_XREF=gi:5034882 /DB_XREF=UI-R-Y0-ack-e-10-0-UI.s1 /CLONE=UI-R-Y0-ack-e-10-0-UI /FEA=EST /CNT=5 /TID=Rn.5854.2 /TIER=ConsEnd /STK=1 /UG=Rn.5854 /UG_TITLE=ESTs AI717668 1382309_at BI286390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286390 /DB_XREF=gi:14940989 /DB_XREF=UI-R-DE0-cak-d-07-0-UI.s1 /CLONE=UI-R-DE0-cak-d-07-0-UI /FEA=EST /CNT=5 /TID=Rn.18809.1 /TIER=ConsEnd /STK=1 /UG=Rn.18809 /UG_TITLE=ESTs BI286390 1382310_at AA849263 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849263 /DB_XREF=gi:2936803 /DB_XREF=EST192030 /CLONE=RMUAC84 /FEA=EST /CNT=5 /TID=Rn.23141.1 /TIER=ConsEnd /STK=1 /UG=Rn.23141 /UG_TITLE=ESTs AA849263 similar to component of oligomeric golgi complex 5 isoform 1 RGD1563296 314030 XM_001076141 /// XM_002729621 1382311_at BM384466 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384466 /DB_XREF=gi:18184514 /DB_XREF=UI-R-CN1-cjn-o-22-0-UI.s1 /CLONE=UI-R-CN1-cjn-o-22-0-UI /FEA=EST /CNT=5 /TID=Rn.15424.1 /TIER=ConsEnd /STK=1 /UG=Rn.15424 /UG_TITLE=ESTs BM384466 TRAF-interacting protein with forkhead-associated domain Tifa 310877 NM_001014044 0007249 // I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382312_at AW530903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530903 /DB_XREF=gi:7173317 /DB_XREF=UI-R-BT1-aks-g-06-0-UI.s1 /CLONE=UI-R-BT1-aks-g-06-0-UI /FEA=EST /CNT=5 /TID=Rn.47577.1 /TIER=ConsEnd /STK=1 /UG=Rn.47577 /UG_TITLE=ESTs, Weakly similar to DRI1_MOUSE DEAD RINGER LIKE-1 PROTEIN (B-CELL REGULATOR OF IGH TRANSCRIPTION) (BRIGHT) (M.musculus) AW530903 AT rich interactive domain 5B (Mrf1 like) Arid5b 309728 NM_001107624 0001822 // kidney development // not recorded /// 0006807 // nitrogen compound metabolic process // not recorded /// 0009791 // post-embryonic development // not recorded /// 0010761 // fibroblast migration // not recorded /// 0035264 // multicellular organism growth // not recorded /// 0048008 // platelet-derived growth factor receptor signaling pathway // not recorded /// 0048644 // muscle organ morphogenesis // not recorded /// 0048705 // skeletal system morphogenesis // not recorded /// 0060021 // palate development // not recorded /// 0060325 // face morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1382313_at AI511408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511408 /DB_XREF=gi:4417107 /DB_XREF=UI-R-C3-sh-a-08-0-UI.s1 /CLONE=UI-R-C3-sh-a-08-0-UI /FEA=EST /CNT=5 /TID=Rn.22181.1 /TIER=ConsEnd /STK=1 /UG=Rn.22181 /UG_TITLE=ESTs AI511408 1382314_at BE096523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096523 /DB_XREF=gi:8487454 /DB_XREF=UI-R-BU0-aph-b-06-0-UI.s1 /CLONE=UI-R-BU0-aph-b-06-0-UI /FEA=EST /CNT=5 /TID=Rn.48054.1 /TIER=ConsEnd /STK=1 /UG=Rn.48054 /UG_TITLE=ESTs, Weakly similar to S45359 polyubiquitin 10 - rat (R.norvegicus) BE096523 ISG15 ubiquitin-like modifier Isg15 298693 NM_001106700 0032020 // ISG15-protein conjugation // not recorded 0005515 // protein binding // not recorded 1382315_at BF286388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF286388 /DB_XREF=gi:11217458 /DB_XREF=EST450979 /CLONE=RGIFP34 /FEA=EST /CNT=5 /TID=Rn.24401.1 /TIER=ConsEnd /STK=1 /UG=Rn.24401 /UG_TITLE=ESTs BF286388 TSC22 domain family, member 4 Tsc22d4 684980 NM_001044284 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1382316_at BE118866 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118866 /DB_XREF=gi:8510971 /DB_XREF=UI-R-BS1-azv-f-08-0-UI.s1 /CLONE=UI-R-BS1-azv-f-08-0-UI /FEA=EST /CNT=5 /TID=Rn.14920.1 /TIER=ConsEnd /STK=1 /UG=Rn.14920 /UG_TITLE=ESTs, Highly similar to S68141 nuclear protein HIRA - mouse (M.musculus) BE118866 HIR histone cell cycle regulation defective homolog A (S. cerevisiae) Hira 363849 NM_001135760 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007369 // gastrulation // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation 0000790 // nuclear chromatin // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1382317_at AI408597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408597 /DB_XREF=gi:4252101 /DB_XREF=EST236887 /CLONE=ROVEJ27 /FEA=EST /CNT=5 /TID=Rn.43649.1 /TIER=ConsEnd /STK=1 /UG=Rn.43649 /UG_TITLE=ESTs AI408597 epidermal growth factor receptor pathway substrate 8 Eps8 312812 XM_001072957 /// XM_232499 0008344 // adult locomotory behavior // not recorded /// 0031532 // actin cytoskeleton reorganization // not recorded /// 0048149 // behavioral response to ethanol // not recorded 0014069 // postsynaptic density // not recorded /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // not recorded /// 0019717 // synaptosome // not recorded 0005515 // protein binding // not recorded 1382318_at AA964856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964856 /DB_XREF=gi:4279730 /DB_XREF=UI-R-C0-gr-a-06-0-UI.s1 /CLONE=UI-R-C0-gr-a-06-0-UI /FEA=EST /CNT=5 /TID=Rn.43928.1 /TIER=ConsEnd /STK=1 /UG=Rn.43928 /UG_TITLE=ESTs AA964856 1382319_at BM389005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389005 /DB_XREF=gi:18189058 /DB_XREF=UI-R-DZ0-ckn-n-08-0-UI.s1 /CLONE=UI-R-DZ0-ckn-n-08-0-UI /FEA=EST /CNT=5 /TID=Rn.16653.1 /TIER=ConsEnd /STK=1 /UG=Rn.16653 /UG_TITLE=ESTs BM389005 G protein-coupled receptor 68 Gpr68 314386 NM_001108049 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1382320_at BI275246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275246 /DB_XREF=gi:14886902 /DB_XREF=UI-R-CX0-bwr-c-08-0-UI.s1 /CLONE=UI-R-CX0-bwr-c-08-0-UI /FEA=EST /CNT=5 /TID=Rn.12746.1 /TIER=ConsEnd /STK=1 /UG=Rn.12746 /UG_TITLE=ESTs BI275246 LOC362793 RGD1307315 362793 NM_001008377 1382321_at AI071312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071312 /DB_XREF=gi:3397527 /DB_XREF=UI-R-C1-ko-e-07-0-UI.s2 /CLONE=UI-R-C1-ko-e-07-0-UI /FEA=EST /CNT=5 /TID=Rn.21915.1 /TIER=ConsEnd /STK=1 /UG=Rn.21915 /UG_TITLE=ESTs AI071312 transmembrane protein 161A Tmem161a 364535 NM_001108874 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032526 // response to retinoic acid // not recorded /// 0034599 // cellular response to oxidative stress // inferred from electronic annotation /// 0034599 // cellular response to oxidative stress // not recorded /// 0034644 // cellular response to UV // inferred from electronic annotation /// 0034644 // cellular response to UV // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045739 // positive regulation of DNA repair // inferred from electronic annotation /// 0045739 // positive regulation of DNA repair // not recorded 0016021 // integral to membrane // inferred from electronic annotation 1382322_a_at AI029769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029769 /DB_XREF=gi:4300847 /DB_XREF=UI-R-C0-iz-c-01-0-UI.s1 /CLONE=UI-R-C0-iz-c-01-0-UI /FEA=EST /CNT=1 /TID=Rn.15668.2 /TIER=ConsEnd /STK=0 /UG=Rn.15668 /UG_TITLE=ESTs, Weakly similar to T25144 hypothetical protein T22H6.6 - Caenorhabditis elegans (C.elegans) AI029769 capicua homolog (Drosophila) Cic 308435 NM_001107490 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1382323_at AI502083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502083 /DB_XREF=gi:4399934 /DB_XREF=UI-R-C1-kc-f-06-0-UI.s1 /CLONE=UI-R-C1-kc-f-06-0-UI /FEA=EST /CNT=5 /TID=Rn.78573.1 /TIER=ConsEnd /STK=1 /UG=Rn.78573 /UG_TITLE=ESTs AI502083 cornifelin Cnfn 365217 NM_001108909 0001533 // cornified envelope // not recorded 1382324_at AA851183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851183 /DB_XREF=gi:2938723 /DB_XREF=EST193951 /CLONE=RPLAD54 /FEA=EST /CNT=5 /TID=Rn.6710.1 /TIER=ConsEnd /STK=1 /UG=Rn.6710 /UG_TITLE=ESTs AA851183 1382325_at AW525471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525471 /DB_XREF=gi:7167856 /DB_XREF=UI-R-BJ0p-ail-a-02-0-UI.s1 /CLONE=UI-R-BJ0p-ail-a-02-0-UI /FEA=EST /CNT=5 /TID=Rn.43940.1 /TIER=ConsEnd /STK=1 /UG=Rn.43940 /UG_TITLE=ESTs, Weakly similar to JX0278 5-aminolevulinate synthase (R.norvegicus) AW525471 glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase) Gcat 366959 NM_001024277 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0008890 // glycine C-acetyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1382326_at AI555347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555347 /DB_XREF=gi:4487710 /DB_XREF=UI-R-C2p-qw-f-03-0-UI.s1 /CLONE=UI-R-C2p-qw-f-03-0-UI /FEA=EST /CNT=5 /TID=Rn.22315.1 /TIER=ConsEnd /STK=1 /UG=Rn.22315 /UG_TITLE=ESTs AI555347 Death effector domain-containing Dedd 83631 NM_031800 0006350 // transcription // inferred from electronic annotation /// 0006915 // apoptosis // non-traceable author statement /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from sequence or structural similarity /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382327_at AI575409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575409 /DB_XREF=gi:4559785 /DB_XREF=UI-R-Y0-vg-a-03-0-UI.s1 /CLONE=UI-R-Y0-vg-a-03-0-UI /FEA=EST /CNT=5 /TID=Rn.6541.1 /TIER=ConsEnd /STK=1 /UG=Rn.6541 /UG_TITLE=ESTs, Weakly similar to RP3A RAT RABPHILIN-3A (R.norvegicus) AI575409 double C2, gamma Doc2g 293654 NM_001011937 0006810 // transport // inferred from electronic annotation 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1382328_at AW918029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918029 /DB_XREF=gi:8083796 /DB_XREF=EST349333 /CLONE=RGIEL39 /FEA=EST /CNT=5 /TID=Rn.18967.1 /TIER=ConsEnd /STK=1 /UG=Rn.18967 /UG_TITLE=ESTs AW918029 GTPase, IMAP family member 1 Gimap1 312312 NM_001034849 0001659 // temperature homeostasis // inferred from mutant phenotype /// 0002729 // positive regulation of natural killer cell cytokine production // inferred from mutant phenotype /// 0002925 // positive regulation of humoral immune response mediated by circulating immunoglobulin // inferred from mutant phenotype /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from mutant phenotype /// 0030217 // T cell differentiation // inferred from expression pattern /// 0032689 // negative regulation of interferon-gamma production // inferred from mutant phenotype /// 0032831 // positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation // inferred from mutant phenotype /// 0043011 // myeloid dendritic cell differentiation // inferred from mutant phenotype /// 0043029 // T cell homeostasis // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0045019 // negative regulation of nitric oxide biosynthetic process // inferred from mutant phenotype /// 0045588 // positive regulation of gamma-delta T cell differentiation // inferred from mutant phenotype /// 0045838 // positive regulation of membrane potential // inferred from mutant phenotype /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // inferred from mutant phenotype /// 0046902 // regulation of mitochondrial membrane permeability // inferred from mutant phenotype /// 0050868 // negative regulation of T cell activation // inferred from mutant phenotype /// 0050995 // negative regulation of lipid catabolic process // inferred from mutant phenotype 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1382329_at AW523888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523888 /DB_XREF=gi:7166273 /DB_XREF=UI-R-BO0-aie-b-09-0-UI.s1 /CLONE=UI-R-BO0-aie-b-09-0-UI /FEA=EST /CNT=5 /TID=Rn.13143.1 /TIER=ConsEnd /STK=1 /UG=Rn.13143 /UG_TITLE=ESTs AW523888 1382330_at BE116838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116838 /DB_XREF=gi:8508943 /DB_XREF=UI-R-BS1-ayf-h-02-0-UI.s1 /CLONE=UI-R-BS1-ayf-h-02-0-UI /FEA=EST /CNT=5 /TID=Rn.7704.1 /TIER=ConsEnd /STK=1 /UG=Rn.7704 /UG_TITLE=ESTs BE116838 1382331_at AI180421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180421 /DB_XREF=gi:3731059 /DB_XREF=EST224167 /CLONE=RSPCX49 /FEA=EST /CNT=9 /TID=Rn.13360.1 /TIER=ConsEnd /STK=1 /UG=Rn.13360 /UG_TITLE=ESTs, Weakly similar to T24155 hypothetical protein R10H10.6 - Caenorhabditis elegans (C.elegans) AI180421 riboflavin kinase Rfk 499328 NM_001014106 0009231 // riboflavin biosynthetic process // inferred from electronic annotation 0008531 // riboflavin kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1382332_at AI549167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549167 /DB_XREF=gi:4466655 /DB_XREF=UI-R-C3-ts-d-06-0-UI.s1 /CLONE=UI-R-C3-ts-d-06-0-UI /FEA=EST /CNT=7 /TID=Rn.29288.1 /TIER=ConsEnd /STK=1 /UG=Rn.29288 /UG_TITLE=ESTs, Moderately similar to T30194 nuclear protein SA2 - mouse (M.musculus) AI549167 stromal antigen 2 Stag2 313304 NM_001173507 /// XM_001059059 /// XM_002727666 /// XM_002727667 /// XM_002730173 /// XM_002730174 /// XM_233108 0007062 // sister chromatid cohesion // not recorded /// 0032876 // negative regulation of DNA endoreduplication // not recorded 0000785 // chromatin // not recorded /// 0005634 // nucleus // not recorded /// 0015629 // actin cytoskeleton // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382333_at AI511250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511250 /DB_XREF=gi:4416949 /DB_XREF=UI-R-C3-sg-h-09-0-UI.s1 /CLONE=UI-R-C3-sg-h-09-0-UI /FEA=EST /CNT=7 /TID=Rn.25264.1 /TIER=ConsEnd /STK=1 /UG=Rn.25264 /UG_TITLE=ESTs AI511250 THUMP domain containing 3 Thumpd3 500288 NM_001170546 /// NM_001170547 /// NM_001170548 /// XM_001078607 /// XM_575638 0005515 // protein binding // not recorded 1382334_at AI170308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170308 /DB_XREF=gi:4134491 /DB_XREF=EST216234 /CLONE=RLUCG76 /FEA=EST /CNT=6 /TID=Rn.6650.1 /TIER=ConsEnd /STK=1 /UG=Rn.6650 /UG_TITLE=ESTs AI170308 1382335_at AI175604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175604 /DB_XREF=gi:3726242 /DB_XREF=EST219160 /CLONE=ROVBC51 /FEA=EST /CNT=6 /TID=Rn.20067.1 /TIER=ConsEnd /STK=1 /UG=Rn.20067 /UG_TITLE=ESTs AI175604 1382336_at AI236491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236491 /DB_XREF=gi:3829997 /DB_XREF=EST233053 /CLONE=ROVDG81 /FEA=EST /CNT=6 /TID=Rn.8872.1 /TIER=ConsEnd /STK=1 /UG=Rn.8872 /UG_TITLE=ESTs AI236491 JAZF zinc finger 1 Jazf1 685879 XM_001065610 /// XM_002726367 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1382337_at BF290113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290113 /DB_XREF=gi:11221183 /DB_XREF=EST454704 /CLONE=RGIHN91 /FEA=EST /CNT=6 /TID=Rn.25436.1 /TIER=ConsEnd /STK=1 /UG=Rn.25436 /UG_TITLE=ESTs BF290113 signal transducing adaptor family member 1 Stap1 305269 NM_001025115 0007165 // signal transduction // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded 0005070 // SH3/SH2 adaptor activity // inferred from electronic annotation /// 0005070 // SH3/SH2 adaptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382338_at AA964833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964833 /DB_XREF=gi:4279707 /DB_XREF=UI-R-C0-gx-c-04-0-UI.s1 /CLONE=UI-R-C0-gx-c-04-0-UI /FEA=EST /CNT=6 /TID=Rn.43959.1 /TIER=ConsEnd /STK=1 /UG=Rn.43959 /UG_TITLE=ESTs, Weakly similar to DDRT helix-destabilizing protein - rat (R.norvegicus) AA964833 Trinucleotide repeat containing 4 Tnrc4 499669 NM_001109190 0000381 // regulation of alternative nuclear mRNA splicing, via spliceosome // not recorded /// 0007283 // spermatogenesis // not recorded /// 0008380 // RNA splicing // not recorded /// 0030317 // sperm motility // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded 1382339_a_at AA875265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875265 /DB_XREF=gi:4231143 /DB_XREF=UI-R-E0-ce-a-10-0-UI.s1 /CLONE=UI-R-E0-ce-a-10-0-UI /FEA=EST /CNT=1 /TID=Rn.2853.2 /TIER=ConsEnd /STK=0 /UG=Rn.2853 /UG_TITLE=ESTs AA875265 1382340_at AA924048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924048 /DB_XREF=gi:4234140 /DB_XREF=UI-R-A1-dt-h-05-0-UI.s1 /CLONE=UI-R-A1-dt-h-05-0-UI /FEA=EST /CNT=5 /TID=Rn.8048.1 /TIER=ConsEnd /STK=1 /UG=Rn.8048 /UG_TITLE=ESTs AA924048 1382341_at AI136740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136740 /DB_XREF=gi:3637517 /DB_XREF=UI-R-C2p-nw-f-12-0-UI.s1 /CLONE=UI-R-C2p-nw-f-12-0-UI /FEA=EST /CNT=5 /TID=Rn.21848.1 /TIER=ConsEnd /STK=1 /UG=Rn.21848 /UG_TITLE=ESTs AI136740 similar to mKIAA0978 protein RGD1561878 311553 XM_002726270 /// XM_002729218 1382342_at BI281174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281174 /DB_XREF=gi:14930644 /DB_XREF=UI-R-CT0s-cat-c-02-0-UI.s1 /CLONE=UI-R-CT0s-cat-c-02-0-UI /FEA=EST /CNT=5 /TID=Rn.16167.1 /TIER=ConsEnd /STK=1 /UG=Rn.16167 /UG_TITLE=ESTs BI281174 1382343_at AA999037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA999037 /DB_XREF=gi:4293585 /DB_XREF=UI-R-C0-in-b-09-0-UI.s1 /CLONE=UI-R-C0-in-b-09-0-UI /FEA=EST /CNT=5 /TID=Rn.33165.1 /TIER=ConsEnd /STK=1 /UG=Rn.33165 /UG_TITLE=ESTs AA999037 1382344_at BE112906 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112906 /DB_XREF=gi:8505011 /DB_XREF=UI-R-BJ1-awa-c-01-0-UI.s1 /CLONE=UI-R-BJ1-awa-c-01-0-UI /FEA=EST /CNT=5 /TID=Rn.18823.1 /TIER=ConsEnd /STK=1 /UG=Rn.18823 /UG_TITLE=ESTs BE112906 1382345_at AA955299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955299 /DB_XREF=gi:4237661 /DB_XREF=UI-R-A1-ej-d-11-0-UI.s1 /CLONE=UI-R-A1-ej-d-11-0-UI /FEA=EST /CNT=5 /TID=Rn.17706.1 /TIER=ConsEnd /STK=1 /UG=Rn.17706 /UG_TITLE=ESTs AA955299 PCTAIRE protein kinase 2 Pctk2 314743 NM_001108082 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1382346_at BF281960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281960 /DB_XREF=gi:11213030 /DB_XREF=EST446551 /CLONE=RGIDA10 /FEA=EST /CNT=5 /TID=Rn.13650.1 /TIER=ConsEnd /STK=1 /UG=Rn.13650 /UG_TITLE=ESTs BF281960 1382347_at AA850576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850576 /DB_XREF=gi:4131860 /DB_XREF=EST193343 /CLONE=ROVAI08 /FEA=EST /CNT=5 /TID=Rn.7022.1 /TIER=ConsEnd /STK=1 /UG=Rn.7022 /UG_TITLE=ESTs AA850576 1382348_at AI230216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230216 /DB_XREF=gi:3814103 /DB_XREF=EST226911 /CLONE=REMCT74 /FEA=EST /CNT=5 /TID=Rn.23690.1 /TIER=ConsEnd /STK=1 /UG=Rn.23690 /UG_TITLE=ESTs, Highly similar to PYRD RAT DIHYDROOROTATE DEHYDROGENASE PRECURSOR (R.norvegicus) AI230216 dihydroorotate dehydrogenase Dhodh 65156 NM_001008553 0006207 // 'de novo' pyrimidine base biosynthetic process // inferred from electronic annotation /// 0006221 // pyrimidine nucleotide biosynthetic process // inferred from electronic annotation /// 0006222 // UMP biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0090140 // regulation of mitochondrial fission // inferred from mutant phenotype 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004152 // dihydroorotate dehydrogenase activity // inferred from direct assay /// 0004152 // dihydroorotate dehydrogenase activity // non-traceable author statement /// 0004152 // dihydroorotate dehydrogenase activity // inferred from electronic annotation /// 0004158 // dihydroorotate oxidase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1382349_at AI408238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408238 /DB_XREF=gi:4251742 /DB_XREF=EST236528 /CLONE=ROVEL83 /FEA=EST /CNT=5 /TID=Rn.23183.1 /TIER=ConsEnd /STK=1 /UG=Rn.23183 /UG_TITLE=ESTs AI408238 TBCC domain containing 1 Tbccd1 303830 NM_001012016 0005488 // binding // inferred from electronic annotation 1382350_at BG377827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377827 /DB_XREF=gi:13302299 /DB_XREF=UI-R-CU0-bvf-f-05-0-UI.s1 /CLONE=UI-R-CU0-bvf-f-05-0-UI /FEA=EST /CNT=5 /TID=Rn.41752.1 /TIER=ConsEnd /STK=1 /UG=Rn.41752 /UG_TITLE=ESTs, Weakly similar to STAB RAT SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 5B (R.norvegicus) BG377827 signal transducer and activator of transcription 6 Stat6 362896 NM_001044250 0002829 // negative regulation of type 2 immune response // inferred from electronic annotation /// 0002829 // negative regulation of type 2 immune response // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from mutant phenotype /// 0034097 // response to cytokine stimulus // inferred from mutant phenotype /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048295 // positive regulation of isotype switching to IgE isotypes // inferred from electronic annotation /// 0048295 // positive regulation of isotype switching to IgE isotypes // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from mutant phenotype /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1382351_at AI069972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI069972 /DB_XREF=gi:3396223 /DB_XREF=UI-R-C1-lo-h-11-0-UI.s1 /CLONE=UI-R-C1-lo-h-11-0-UI /FEA=EST /CNT=5 /TID=Rn.33448.1 /TIER=ConsEnd /STK=1 /UG=Rn.33448 /UG_TITLE=ESTs AI069972 GTP binding protein (gene overexpressed in skeletal muscle) Gem 297902 NM_001106637 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0009898 // internal side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // inferred from electronic annotation 1382352_at AI030845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030845 /DB_XREF=gi:3248671 /DB_XREF=UI-R-C0-jp-a-03-0-UI.s1 /CLONE=UI-R-C0-jp-a-03-0-UI /FEA=EST /CNT=5 /TID=Rn.21635.1 /TIER=ConsEnd /STK=1 /UG=Rn.21635 /UG_TITLE=ESTs AI030845 1382353_at AA999160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA999160 /DB_XREF=gi:4281100 /DB_XREF=UI-R-C0-hm-e-09-0-UI.s1 /CLONE=UI-R-C0-hm-e-09-0-UI /FEA=EST /CNT=5 /TID=Rn.12588.1 /TIER=ConsEnd /STK=1 /UG=Rn.12588 /UG_TITLE=ESTs, Weakly similar to I61581 transcription factor SL1 (H.sapiens) AA999160 TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B Taf1b 690450 NM_001191107 /// XM_001074480 /// XM_002726726 0005654 // nucleoplasm // not recorded 0005515 // protein binding // not recorded 1382354_at BE099884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099884 /DB_XREF=gi:8491767 /DB_XREF=UI-R-BJ1-atl-c-08-0-UI.s1 /CLONE=UI-R-BJ1-atl-c-08-0-UI /FEA=EST /CNT=5 /TID=Rn.16093.1 /TIER=ConsEnd /STK=1 /UG=Rn.16093 /UG_TITLE=ESTs, Weakly similar to MPP8_HUMAN M-PHASE PHOSPHOPROTEIN 8 (H.sapiens) BE099884 M-phase phosphoprotein 8 Mphosph8 290270 NM_001017375 0006333 // chromatin assembly or disassembly // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003682 // chromatin binding // inferred from electronic annotation 1382355_at BM386420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386420 /DB_XREF=gi:18186473 /DB_XREF=UI-R-CN1-cjf-n-12-0-UI.s1 /CLONE=UI-R-CN1-cjf-n-12-0-UI /FEA=EST /CNT=5 /TID=Rn.48592.1 /TIER=ConsEnd /STK=1 /UG=Rn.48592 /UG_TITLE=ESTs BM386420 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4) Galnt4 500826 NM_001025053 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005529 // sugar binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1382356_at BI276482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276482 /DB_XREF=gi:14921427 /DB_XREF=UI-R-CX0-bwq-h-04-0-UI.s1 /CLONE=UI-R-CX0-bwq-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.39302.1 /TIER=ConsEnd /STK=1 /UG=Rn.39302 /UG_TITLE=ESTs BI276482 EF-hand domain (C-terminal) containing 2 Efhc2 302507 NM_001106952 0005509 // calcium ion binding // inferred from electronic annotation 1382357_at AI713784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI713784 /DB_XREF=gi:5017584 /DB_XREF=UI-R-AA1-aad-b-06-0-UI.s1 /CLONE=UI-R-AA1-aad-b-06-0-UI /FEA=EST /CNT=5 /TID=Rn.19127.2 /TIER=ConsEnd /STK=1 /UG=Rn.19127 /UG_TITLE=ESTs AI713784 1382358_at AA943771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943771 /DB_XREF=gi:3103687 /DB_XREF=EST199270 /CLONE=RBRAP50 /FEA=EST /CNT=5 /TID=Rn.54961.1 /TIER=ConsEnd /STK=1 /UG=Rn.54961 /UG_TITLE=ESTs AA943771 1382359_at AI045029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045029 /DB_XREF=gi:3291848 /DB_XREF=UI-R-C1-kf-c-03-0-UI.s1 /CLONE=UI-R-C1-kf-c-03-0-UI /FEA=EST /CNT=5 /TID=Rn.16090.1 /TIER=ConsEnd /STK=1 /UG=Rn.16090 /UG_TITLE=ESTs AI045029 1382360_at AA998744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998744 /DB_XREF=gi:4291973 /DB_XREF=UI-R-C0-ii-e-09-0-UI.s1 /CLONE=UI-R-C0-ii-e-09-0-UI /FEA=EST /CNT=5 /TID=Rn.23318.1 /TIER=ConsEnd /STK=1 /UG=Rn.23318 /UG_TITLE=ESTs, Weakly similar to A45054 probable intercellular signal transducer or transmitter Fz-1 - rat (R.norvegicus) AA998744 frizzled homolog 5 (Drosophila) Fzd5 317674 NM_173838 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0033077 // T cell differentiation in thymus // not recorded /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060716 // labyrinthine layer blood vessel development // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017147 // Wnt-protein binding // inferred from physical interaction /// 0017147 // Wnt-protein binding // not recorded /// 0017147 // Wnt-protein binding // inferred from electronic annotation 1382361_at BF290407 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290407 /DB_XREF=gi:11221477 /DB_XREF=EST454998 /CLONE=RGIHV55 /FEA=EST /CNT=5 /TID=Rn.6631.1 /TIER=ConsEnd /STK=1 /UG=Rn.6631 /UG_TITLE=ESTs BF290407 1382362_at AA997890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997890 /DB_XREF=gi:4286045 /DB_XREF=UI-R-C0-ht-a-11-0-UI.s1 /CLONE=UI-R-C0-ht-a-11-0-UI /FEA=EST /CNT=5 /TID=Rn.27010.1 /TIER=ConsEnd /STK=1 /UG=Rn.27010 /UG_TITLE=ESTs AA997890 1382363_at AI072027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072027 /DB_XREF=gi:3398221 /DB_XREF=UI-R-C2-nd-f-01-0-UI.s1 /CLONE=UI-R-C2-nd-f-01-0-UI /FEA=EST /CNT=5 /TID=Rn.7497.1 /TIER=ConsEnd /STK=1 /UG=Rn.7497 /UG_TITLE=ESTs, Weakly similar to MPP2_HUMAN MAGUK P55 SUBFAMILY MEMBER 2 (H.sapiens) AI072027 membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5) Mpp5 314259 NM_001108034 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382364_at BI293914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293914 /DB_XREF=gi:14955866 /DB_XREF=UI-R-DK0-cdw-e-08-0-UI.s1 /CLONE=UI-R-DK0-cdw-e-08-0-UI /FEA=EST /CNT=5 /TID=Rn.42115.1 /TIER=ConsEnd /STK=1 /UG=Rn.42115 /UG_TITLE=ESTs BI293914 similar to KIAA0090 protein RGD1310427 362643 NM_001108690 0005515 // protein binding // not recorded 1382365_at AA997745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997745 /DB_XREF=gi:4281027 /DB_XREF=UI-R-C0-hn-d-10-0-UI.s1 /CLONE=UI-R-C0-hn-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.37331.2 /TIER=ConsEnd /STK=1 /UG=Rn.37331 /UG_TITLE=ESTs AA997745 Nemo like kinase Nlk 497961 NM_001191924 /// XM_001080888 /// XM_573152 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007243 // intracellular protein kinase cascade // not recorded /// 0018107 // peptidyl-threonine phosphorylation // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0033136 // serine phosphorylation of STAT3 protein // not recorded /// 0045449 // regulation of transcription // not recorded /// 0046777 // protein autophosphorylation // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004707 // MAP kinase activity // inferred from electronic annotation /// 0004707 // MAP kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0042169 // SH2 domain binding // not recorded 1382366_at AI578786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578786 /DB_XREF=gi:4563162 /DB_XREF=UI-R-Y0-va-h-05-0-UI.s2 /CLONE=UI-R-Y0-va-h-05-0-UI /FEA=EST /CNT=5 /TID=Rn.34125.2 /TIER=ConsEnd /STK=1 /UG=Rn.34125 /UG_TITLE=ESTs AI578786 phosphoinositide-3-kinase, catalytic, alpha polypeptide Pik3ca 170911 NM_133399 /// XM_001059350 /// XM_001063573 0006006 // glucose metabolic process // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0040014 // regulation of multicellular organism growth // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043491 // protein kinase B signaling cascade // not recorded /// 0046854 // phosphoinositide phosphorylation // inferred from direct assay /// 0046854 // phosphoinositide phosphorylation // not recorded /// 0046854 // phosphoinositide phosphorylation // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation 0005829 // cytosol // not recorded /// 0005942 // phosphoinositide 3-kinase complex // inferred from direct assay /// 0005942 // phosphoinositide 3-kinase complex // not recorded /// 0030027 // lamellipodium // not recorded 0004428 // inositol or phosphatidylinositol kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from direct assay /// 0016303 // 1-phosphatidylinositol-3-kinase activity // not recorded /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0043560 // insulin receptor substrate binding // not recorded /// 0046934 // phosphatidylinositol-4,5-bisphosphate 3-kinase activity // not recorded 1382367_at AI228502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228502 /DB_XREF=gi:4135357 /DB_XREF=EST225197 /CLONE=RBRCV73 /FEA=EST /CNT=5 /TID=Rn.24334.1 /TIER=ConsEnd /STK=1 /UG=Rn.24334 /UG_TITLE=ESTs AI228502 1382368_at AA943075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943075 /DB_XREF=gi:3102991 /DB_XREF=EST198574 /CLONE=RBRAE60 /FEA=EST /CNT=5 /TID=Rn.21756.1 /TIER=ConsEnd /STK=1 /UG=Rn.21756 /UG_TITLE=ESTs AA943075 TROVE domain family, member 2 Trove2 304833 NM_001107183 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382369_at AI233268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233268 /DB_XREF=gi:3817148 /DB_XREF=EST229956 /CLONE=RKIDC96 /FEA=EST /CNT=4 /TID=Rn.24710.1 /TIER=ConsEnd /STK=1 /UG=Rn.24710 /UG_TITLE=ESTs AI233268 1382370_at BE113938 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113938 /DB_XREF=gi:8506043 /DB_XREF=UI-R-BJ1-awi-b-11-0-UI.s1 /CLONE=UI-R-BJ1-awi-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.15126.1 /TIER=ConsEnd /STK=1 /UG=Rn.15126 /UG_TITLE=ESTs, Moderately similar to CG2F MOUSE G2MITOTIC-SPECIFIC CYCLIN F (M.musculus) BE113938 cyclin F Ccnf 117524 NM_001100474 0000320 // re-entry into mitotic cell cycle // not recorded /// 0001890 // placenta development // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0010826 // negative regulation of centrosome duplication // not recorded /// 0010826 // negative regulation of centrosome duplication // inferred from sequence or structural similarity /// 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from sequence or structural similarity /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005814 // centriole // not recorded /// 0005814 // centriole // inferred from sequence or structural similarity /// 0005814 // centriole // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0019005 // SCF ubiquitin ligase complex // not recorded /// 0019005 // SCF ubiquitin ligase complex // inferred from sequence or structural similarity 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382371_at AI172475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172475 /DB_XREF=gi:3712515 /DB_XREF=EST218487 /CLONE=RMUCA32 /FEA=EST /CNT=4 /TID=Rn.33870.1 /TIER=ConsEnd /STK=1 /UG=Rn.33870 /UG_TITLE=ESTs AI172475 DNA-damage regulated autophagy modulator 2 Dram2 362011 NM_001025018 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from sequence or structural similarity 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from sequence or structural similarity /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1382372_at AA858521 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858521 /DB_XREF=gi:4229854 /DB_XREF=UI-R-E0-bt-e-08-0-UI.s1 /CLONE=UI-R-E0-bt-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.37840.1 /TIER=ConsEnd /STK=1 /UG=Rn.37840 /UG_TITLE=ESTs AA858521 1382373_at AA964332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964332 /DB_XREF=gi:4279207 /DB_XREF=UI-R-C0-gu-h-07-0-UI.s1 /CLONE=UI-R-C0-gu-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.39023.1 /TIER=ConsEnd /STK=1 /UG=Rn.39023 /UG_TITLE=ESTs AA964332 family with sequence similarity 135, member A Fam135a 367235 NM_001134597 1382374_at AA875017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875017 /DB_XREF=gi:4230899 /DB_XREF=UI-R-E0-cb-e-12-0-UI.s1 /CLONE=UI-R-E0-cb-e-12-0-UI /FEA=EST /CNT=4 /TID=Rn.3203.1 /TIER=ConsEnd /STK=1 /UG=Rn.3203 /UG_TITLE=ESTs AA875017 1382375_at AI639128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639128 /DB_XREF=gi:4700162 /DB_XREF=rx00303s /CLONE=rx00303 /FEA=EST /CNT=4 /TID=Rn.57527.1 /TIER=ConsEnd /STK=1 /UG=Rn.57527 /UG_TITLE=ESTs AI639128 1382376_at BI297220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297220 /DB_XREF=gi:14962397 /DB_XREF=UI-R-DK0-cgc-h-02-0-UI.s1 /CLONE=UI-R-DK0-cgc-h-02-0-UI /FEA=EST /CNT=4 /TID=Rn.62629.1 /TIER=ConsEnd /STK=1 /UG=Rn.62629 /UG_TITLE=ESTs BI297220 1382377_at AI176429 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176429 /DB_XREF=gi:3727067 /DB_XREF=EST220013 /CLONE=ROVBR63 /FEA=EST /CNT=4 /TID=Rn.22740.1 /TIER=ConsEnd /STK=1 /UG=Rn.22740 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) AI176429 1382378_at BI279370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279370 /DB_XREF=gi:14927121 /DB_XREF=UI-R-DA0-byn-f-03-0-UI.s1 /CLONE=UI-R-DA0-byn-f-03-0-UI /FEA=EST /CNT=4 /TID=Rn.34406.1 /TIER=ConsEnd /STK=1 /UG=Rn.34406 /UG_TITLE=ESTs, Weakly similar to CATH RAT CATHEPSIN H PRECURSOR (R.norvegicus) BI279370 cathepsin W Ctsw 293676 NM_001024242 0006508 // proteolysis // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation 1382379_at AW529177 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529177 /DB_XREF=gi:7171591 /DB_XREF=UI-R-BO1-ajp-h-05-0-UI.s1 /CLONE=UI-R-BO1-ajp-h-05-0-UI /FEA=EST /CNT=4 /TID=Rn.45002.1 /TIER=ConsEnd /STK=1 /UG=Rn.45002 /UG_TITLE=ESTs AW529177 ring finger protein 138 Rnf138 94196 NM_053588 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1382380_at AI176317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176317 /DB_XREF=gi:3726955 /DB_XREF=EST219900 /CLONE=ROVBQ02 /FEA=EST /CNT=4 /TID=Rn.23148.1 /TIER=ConsEnd /STK=1 /UG=Rn.23148 /UG_TITLE=ESTs AI176317 1382381_at AA818480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818480 /DB_XREF=gi:4228275 /DB_XREF=UI-R-A0-at-d-01-0-UI.s1 /CLONE=UI-R-A0-at-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.16713.1 /TIER=ConsEnd /STK=1 /UG=Rn.16713 /UG_TITLE=ESTs AA818480 1382382_at AW524468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524468 /DB_XREF=gi:7166848 /DB_XREF=UI-R-BO0-ahx-f-12-0-UI.s1 /CLONE=UI-R-BO0-ahx-f-12-0-UI /FEA=EST /CNT=4 /TID=Rn.20243.1 /TIER=ConsEnd /STK=1 /UG=Rn.20243 /UG_TITLE=ESTs AW524468 ermin, ERM-like protein Ermn 295619 NM_001008311 0001763 // morphogenesis of a branching structure // inferred from electronic annotation /// 0001763 // morphogenesis of a branching structure // not recorded /// 0007015 // actin filament organization // inferred from electronic annotation /// 0007015 // actin filament organization // not recorded /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0031344 // regulation of cell projection organization // inferred from electronic annotation /// 0031344 // regulation of cell projection organization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030175 // filopodium // inferred from electronic annotation /// 0030175 // filopodium // not recorded /// 0033269 // internode region of axon // inferred from electronic annotation /// 0033269 // internode region of axon // not recorded /// 0033270 // paranode region of axon // inferred from electronic annotation /// 0033270 // paranode region of axon // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043209 // myelin sheath // inferred from electronic annotation /// 0043209 // myelin sheath // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1382383_at AI103351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103351 /DB_XREF=gi:3707903 /DB_XREF=EST212640 /CLONE=REMCA95 /FEA=EST /CNT=4 /TID=Rn.43546.1 /TIER=ConsEnd /STK=1 /UG=Rn.43546 /UG_TITLE=ESTs AI103351 1382384_at BM383783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383783 /DB_XREF=gi:18183836 /DB_XREF=UI-R-DM1-ckb-h-07-0-UI.s1 /CLONE=UI-R-DM1-ckb-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.18159.1 /TIER=ConsEnd /STK=1 /UG=Rn.18159 /UG_TITLE=ESTs, Weakly similar to Y168_HUMAN HYPOTHETICAL PROTEIN KIAA0168 (H.sapiens) BM383783 Ras association (RalGDS/AF-6) domain family member 6 Rassf6 305251 NM_001025671 0006915 // apoptosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382385_at BE116344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116344 /DB_XREF=gi:8508449 /DB_XREF=UI-R-BS1-ayc-b-08-0-UI.s1 /CLONE=UI-R-BS1-ayc-b-08-0-UI /FEA=EST /CNT=4 /TID=Rn.52665.1 /TIER=ConsEnd /STK=1 /UG=Rn.52665 /UG_TITLE=ESTs BE116344 proteasome (prosome, macropain) 26S subunit, ATPase, 6 Psmc6 289990 NM_001100509 0030163 // protein catabolic process // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation /// 0000502 // proteasome complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1382386_at BI274268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274268 /DB_XREF=gi:14885033 /DB_XREF=UI-R-CW0-bwg-h-09-0-UI.s1 /CLONE=UI-R-CW0-bwg-h-09-0-UI /FEA=EST /CNT=4 /TID=Rn.55189.1 /TIER=ConsEnd /STK=1 /UG=Rn.55189 /UG_TITLE=ESTs BI274268 limb region 1 homolog (mouse) Lmbr1 362295 NM_001191858 /// XM_001054970 /// XM_342608 0042733 // embryonic digit morphogenesis // not recorded 1382387_at BF288508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288508 /DB_XREF=gi:11219578 /DB_XREF=EST453099 /CLONE=RGIGU45 /FEA=EST /CNT=4 /TID=Rn.17724.1 /TIER=ConsEnd /STK=1 /UG=Rn.17724 /UG_TITLE=ESTs BF288508 anoctamin 1, calcium activated chloride channel Ano1 309135 NM_001107564 0006821 // chloride transport // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0060438 // trachea development // not recorded 0005886 // plasma membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0005229 // intracellular calcium activated chloride channel activity // not recorded 1382388_at AW533941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533941 /DB_XREF=gi:7176315 /DB_XREF=UI-R-C4-alw-d-12-0-UI.s1 /CLONE=UI-R-C4-alw-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.48200.1 /TIER=ConsEnd /STK=1 /UG=Rn.48200 /UG_TITLE=ESTs AW533941 Transmembrane protein 143 Tmem143 308593 NM_001107513 0005739 // mitochondrion // not recorded 1382389_at AI179755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179755 /DB_XREF=gi:4135191 /DB_XREF=EST223483 /CLONE=RSPCL30 /FEA=EST /CNT=4 /TID=Rn.54747.1 /TIER=ConsEnd /STK=1 /UG=Rn.54747 /UG_TITLE=ESTs, Highly similar to guanine nucleotide regulatory protein (H.sapiens) AI179755 Rho guanine nucleotide exchange factor (GEF) 5 Arhgef5 140898 XM_001073085 /// XM_342676 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1382390_at AI177572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177572 /DB_XREF=gi:3728210 /DB_XREF=EST221206 /CLONE=RPLCB83 /FEA=EST /CNT=4 /TID=Rn.23765.1 /TIER=ConsEnd /STK=1 /UG=Rn.23765 /UG_TITLE=ESTs AI177572 1382391_at BF397532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397532 /DB_XREF=gi:11382515 /DB_XREF=UI-R-BS2-bez-f-02-0-UI.s1 /CLONE=UI-R-BS2-bez-f-02-0-UI /FEA=EST /CNT=4 /TID=Rn.21950.1 /TIER=ConsEnd /STK=1 /UG=Rn.21950 /UG_TITLE=ESTs BF397532 1382392_at AI045633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045633 /DB_XREF=gi:3292452 /DB_XREF=UI-R-C1-ka-f-09-0-UI.s1 /CLONE=UI-R-C1-ka-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.43409.1 /TIER=ConsEnd /STK=1 /UG=Rn.43409 /UG_TITLE=ESTs AI045633 1382393_at AI407100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407100 /DB_XREF=gi:4250604 /DB_XREF=EST235388 /CLONE=ROVDT25 /FEA=EST /CNT=4 /TID=Rn.16437.1 /TIER=ConsEnd /STK=1 /UG=Rn.16437 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) AI407100 1382394_at AA955985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955985 /DB_XREF=gi:4238380 /DB_XREF=UI-R-E1-fb-f-02-0-UI.s1 /CLONE=UI-R-E1-fb-f-02-0-UI /FEA=EST /CNT=4 /TID=Rn.23931.1 /TIER=ConsEnd /STK=1 /UG=Rn.23931 /UG_TITLE=ESTs AA955985 1382395_at AA963192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963192 /DB_XREF=gi:4278116 /DB_XREF=UI-R-E1-gh-d-06-0-UI.s1 /CLONE=UI-R-E1-gh-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.23187.1 /TIER=ConsEnd /STK=1 /UG=Rn.23187 /UG_TITLE=ESTs AA963192 1382396_at BE101337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101337 /DB_XREF=gi:8493250 /DB_XREF=UI-R-BJ1-aui-h-02-0-UI.s1 /CLONE=UI-R-BJ1-aui-h-02-0-UI /FEA=EST /CNT=4 /TID=Rn.50048.1 /TIER=ConsEnd /STK=1 /UG=Rn.50048 /UG_TITLE=ESTs, Highly similar to T00742 ubiquitin-binding protein homolog A-735G6.2 (H.sapiens) BE101337 ubiquitin family domain containing 1 Ubfd1 293454 NM_001034911 1382397_at AA999159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA999159 /DB_XREF=gi:4281099 /DB_XREF=UI-R-C0-hm-e-08-0-UI.s1 /CLONE=UI-R-C0-hm-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.23274.1 /TIER=ConsEnd /STK=1 /UG=Rn.23274 /UG_TITLE=ESTs AA999159 1382398_at BF291169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291169 /DB_XREF=gi:11222239 /DB_XREF=EST455760 /CLONE=RGIIJ61 /FEA=EST /CNT=4 /TID=Rn.43640.1 /TIER=ConsEnd /STK=1 /UG=Rn.43640 /UG_TITLE=ESTs BF291169 shisa homolog 3 (Xenopus laevis) Shisa3 498356 NM_001109087 1382399_at AW530026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530026 /DB_XREF=gi:7172440 /DB_XREF=UI-R-BT1-akr-e-05-0-UI.s1 /CLONE=UI-R-BT1-akr-e-05-0-UI /FEA=EST /CNT=4 /TID=Rn.47360.1 /TIER=ConsEnd /STK=1 /UG=Rn.47360 /UG_TITLE=ESTs AW530026 coiled-coil domain containing 55 Ccdc55 303346 NM_001037189 0016607 // nuclear speck // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded 1382400_at BE104395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104395 /DB_XREF=gi:8496495 /DB_XREF=UI-R-BX0-aro-d-06-0-UI.s1 /CLONE=UI-R-BX0-aro-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.50631.1 /TIER=ConsEnd /STK=1 /UG=Rn.50631 /UG_TITLE=ESTs BE104395 rearranged L-myc fusion Rlf 313566 XM_001054292 /// XM_002726636 /// XM_233485 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1382401_at AI172597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172597 /DB_XREF=gi:3712637 /DB_XREF=UI-R-C2p-oh-d-04-0-UI.s1 /CLONE=UI-R-C2p-oh-d-04-0-UI /FEA=EST /CNT=4 /TID=Rn.22512.1 /TIER=ConsEnd /STK=1 /UG=Rn.22512 /UG_TITLE=ESTs AI172597 1382402_at AI230479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230479 /DB_XREF=gi:3814366 /DB_XREF=EST227174 /CLONE=REMCX02 /FEA=EST /CNT=4 /TID=Rn.43583.1 /TIER=ConsEnd /STK=1 /UG=Rn.43583 /UG_TITLE=ESTs AI230479 Unc-51 like kinase 1 (C. elegans) Ulk1 360827 NM_001108341 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded /// 0007409 // axonogenesis // not recorded /// 0008104 // protein localization // not recorded /// 0010506 // regulation of autophagy // not recorded /// 0021707 // cerebellar granule cell differentiation // not recorded /// 0021933 // radial glia guided migration of granule cell // not recorded /// 0031102 // neuron projection regeneration // inferred from mutant phenotype /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0031175 // neuron projection development // not recorded /// 0031623 // receptor internalization // not recorded /// 0046777 // protein autophosphorylation // not recorded /// 0048671 // negative regulation of collateral sprouting // not recorded /// 0048675 // axon extension // not recorded /// 0051386 // regulation of nerve growth factor receptor signaling pathway // not recorded 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // not recorded /// 0005776 // autophagic vacuole // not recorded /// 0005829 // cytosol // not recorded /// 0030659 // cytoplasmic vesicle membrane // not recorded /// 0043005 // neuron projection // not recorded /// 0043025 // neuronal cell body // not recorded /// 0070969 // ULK1-ATG13-FIP200 complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0032403 // protein complex binding // not recorded 1382403_at AA964146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964146 /DB_XREF=gi:4279022 /DB_XREF=UI-R-E1-gl-f-08-0-UI.s1 /CLONE=UI-R-E1-gl-f-08-0-UI /FEA=EST /CNT=4 /TID=Rn.65538.1 /TIER=ConsEnd /STK=1 /UG=Rn.65538 /UG_TITLE=ESTs AA964146 similar to RIKEN cDNA 2610019F03 LOC498662 498662 NM_001100791 1382404_at BG669741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669741 /DB_XREF=gi:13891663 /DB_XREF=DRNAAIG01 /CLONE=DRNAAIG01 /FEA=EST /CNT=4 /TID=Rn.3052.1 /TIER=ConsEnd /STK=1 /UG=Rn.3052 /UG_TITLE=ESTs BG669741 1382405_at AI228179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228179 /DB_XREF=gi:3812066 /DB_XREF=EST224874 /CLONE=RBRCR46 /FEA=EST /CNT=4 /TID=Rn.43556.1 /TIER=ConsEnd /STK=1 /UG=Rn.43556 /UG_TITLE=ESTs AI228179 1382406_at AA892737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892737 /DB_XREF=gi:3019616 /DB_XREF=EST196540 /CLONE=RKIAW61 /FEA=EST /CNT=4 /TID=Rn.18840.1 /TIER=ConsEnd /STK=1 /UG=Rn.18840 /UG_TITLE=ESTs AA892737 mitogen-activated protein kinase kinase kinase 9 Map3k9 500690 XM_002726763 /// XM_576071 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0008219 // cell death // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // not recorded 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1382407_at BF283320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283320 /DB_XREF=gi:11214390 /DB_XREF=EST447911 /CLONE=RGIEA35 /FEA=EST /CNT=4 /TID=Rn.24753.1 /TIER=ConsEnd /STK=1 /UG=Rn.24753 /UG_TITLE=ESTs BF283320 1382408_at AI011879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011879 /DB_XREF=gi:3225711 /DB_XREF=EST206330 /CLONE=RPLAP94 /FEA=EST /CNT=4 /TID=Rn.37639.1 /TIER=ConsEnd /STK=1 /UG=Rn.37639 /UG_TITLE=ESTs AI011879 Similar to C20orf118 RGD1561343 502689 XM_578186 1382409_at AI072515 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072515 /DB_XREF=gi:3398709 /DB_XREF=UI-R-C2-ni-b-03-0-UI.s1 /CLONE=UI-R-C2-ni-b-03-0-UI /FEA=EST /CNT=4 /TID=Rn.51970.1 /TIER=ConsEnd /STK=1 /UG=Rn.51970 /UG_TITLE=ESTs, Moderately similar to T50634 hypothetical protein DKFZp762H1311.1 (H.sapiens) AI072515 testis specific, 14 Tsga14 500069 NM_001025770 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // not recorded /// 0005829 // cytosol // not recorded /// 0015030 // Cajal body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1382410_at AI549450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549450 /DB_XREF=gi:4466938 /DB_XREF=UI-R-C3-tu-a-03-0-UI.s1 /CLONE=UI-R-C3-tu-a-03-0-UI /FEA=EST /CNT=4 /TID=Rn.43990.1 /TIER=ConsEnd /STK=1 /UG=Rn.43990 /UG_TITLE=ESTs, Weakly similar to S34198 IgE Fc receptor II, low-affinity - rat (R.norvegicus) AI549450 CD209b antigen Cd209b 288378 NM_001170397 0001879 // detection of yeast // inferred from electronic annotation /// 0001879 // detection of yeast // not recorded /// 0006910 // phagocytosis, recognition // inferred from electronic annotation /// 0006910 // phagocytosis, recognition // not recorded /// 0016045 // detection of bacterium // inferred from electronic annotation /// 0016045 // detection of bacterium // not recorded /// 0042535 // positive regulation of tumor necrosis factor biosynthetic process // inferred from electronic annotation /// 0042535 // positive regulation of tumor necrosis factor biosynthetic process // not recorded /// 0050766 // positive regulation of phagocytosis // inferred from electronic annotation /// 0050766 // positive regulation of phagocytosis // not recorded 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded 0001872 // zymosan binding // inferred from electronic annotation /// 0001872 // zymosan binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0005537 // mannose binding // inferred from electronic annotation /// 0005537 // mannose binding // not recorded /// 0030247 // polysaccharide binding // not recorded /// 0030247 // polysaccharide binding // inferred from electronic annotation 1382411_at BF288710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288710 /DB_XREF=gi:11219884 /DB_XREF=EST453405 /CLONE=RGIGY32 /FEA=EST /CNT=4 /TID=Rn.11713.1 /TIER=ConsEnd /STK=1 /UG=Rn.11713 /UG_TITLE=ESTs BF288710 zinc finger protein 84 Zfp84 308482 NM_001107500 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382412_at BM389786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389786 /DB_XREF=gi:18189839 /DB_XREF=UI-R-CN1-cjp-d-15-0-UI.s1 /CLONE=UI-R-CN1-cjp-d-15-0-UI /FEA=EST /CNT=4 /TID=Rn.23629.1 /TIER=ConsEnd /STK=1 /UG=Rn.23629 /UG_TITLE=ESTs BM389786 1382413_at AA874825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA874825 /DB_XREF=gi:4230708 /DB_XREF=UI-R-E0-cg-e-09-0-UI.s1 /CLONE=UI-R-E0-cg-e-09-0-UI /FEA=EST /CNT=4 /TID=Rn.48820.1 /TIER=ConsEnd /STK=1 /UG=Rn.48820 /UG_TITLE=ESTs AA874825 Nucleoporin 155 Nup155 117021 NM_053952 0006810 // transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005643 // nuclear pore // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0046930 // pore complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015288 // porin activity // inferred from electronic annotation /// 0017056 // structural constituent of nuclear pore // inferred from electronic annotation 1382414_at AI043787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043787 /DB_XREF=gi:3290522 /DB_XREF=UI-R-C0-jm-h-11-0-UI.s1 /CLONE=UI-R-C0-jm-h-11-0-UI /FEA=EST /CNT=4 /TID=Rn.21684.1 /TIER=ConsEnd /STK=1 /UG=Rn.21684 /UG_TITLE=ESTs AI043787 1382415_at BI289373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289373 /DB_XREF=gi:14946869 /DB_XREF=UI-R-DK0-cfg-b-10-0-UI.s1 /CLONE=UI-R-DK0-cfg-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.79033.1 /TIER=ConsEnd /STK=1 /UG=Rn.79033 /UG_TITLE=ESTs, Weakly similar to T31420 C-terminal domain-binding protein rA8 - rat (R.norvegicus) BI289373 arginine/serine-rich coiled-coil 2 Rsrc2 360807 NM_001014128 1382416_at AI112428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112428 /DB_XREF=gi:3512377 /DB_XREF=UI-R-Y0-mm-d-01-0-UI.s1 /CLONE=UI-R-Y0-mm-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.19925.1 /TIER=ConsEnd /STK=1 /UG=Rn.19925 /UG_TITLE=ESTs AI112428 zinc finger, RAN-binding domain containing 1 protein-like LOC100360606 100360606 XM_002725768 /// XM_002728842 1382417_at AI236886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236886 /DB_XREF=gi:3830392 /DB_XREF=EST233448 /CLONE=ROVDL77 /FEA=EST /CNT=4 /TID=Rn.25399.1 /TIER=ConsEnd /STK=1 /UG=Rn.25399 /UG_TITLE=ESTs, Highly similar to transformed mouse 3T3 cell double minute 4 (Mus musculus) (M.musculus) AI236886 Mdm4 p53 binding protein homolog (mouse) Mdm4 304798 NM_001012026 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006461 // protein complex assembly // inferred from electronic annotation /// 0006461 // protein complex assembly // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0042177 // negative regulation of protein catabolic process // inferred from electronic annotation /// 0042177 // negative regulation of protein catabolic process // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0045023 // G0 to G1 transition // inferred from electronic annotation /// 0045023 // G0 to G1 transition // not recorded /// 0050821 // protein stabilization // inferred from electronic annotation /// 0050821 // protein stabilization // not recorded /// 0071157 // negative regulation of cell cycle arrest // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1382418_at AA901131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901131 /DB_XREF=gi:4233632 /DB_XREF=UI-R-A1-dv-b-10-0-UI.s1 /CLONE=UI-R-A1-dv-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.40375.1 /TIER=ConsEnd /STK=1 /UG=Rn.40375 /UG_TITLE=ESTs AA901131 1382419_at BI276776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276776 /DB_XREF=gi:14922011 /DB_XREF=UI-R-CX0-bxl-d-04-0-UI.s1 /CLONE=UI-R-CX0-bxl-d-04-0-UI /FEA=EST /CNT=4 /TID=Rn.40474.1 /TIER=ConsEnd /STK=1 /UG=Rn.40474 /UG_TITLE=ESTs BI276776 centromere protein K Cenpk 294712 NM_001106407 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1382420_at AI146080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146080 /DB_XREF=gi:3667879 /DB_XREF=UI-R-A1-ew-d-05-0-UI.s1 /CLONE=UI-R-A1-ew-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.28728.1 /TIER=ConsEnd /STK=1 /UG=Rn.28728 /UG_TITLE=ESTs AI146080 Transmembrane protein 87B Tmem87b 362212 NM_001191854 /// XM_001081122 /// XM_342515 0016021 // integral to membrane // inferred from electronic annotation 1382421_at BI292508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292508 /DB_XREF=gi:14953074 /DB_XREF=UI-R-DO0-ciw-i-23-0-UI.s1 /CLONE=UI-R-DO0-ciw-i-23-0-UI /FEA=EST /CNT=4 /TID=Rn.43305.1 /TIER=ConsEnd /STK=1 /UG=Rn.43305 /UG_TITLE=ESTs BI292508 1382422_at AA956340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956340 /DB_XREF=gi:4238771 /DB_XREF=UI-R-E1-fj-c-03-0-UI.s1 /CLONE=UI-R-E1-fj-c-03-0-UI /FEA=EST /CNT=4 /TID=Rn.9621.1 /TIER=ConsEnd /STK=1 /UG=Rn.9621 /UG_TITLE=ESTs AA956340 Protocadherin 7 Pcdh7 360942 NM_001004087 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1382423_at AW920944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920944 /DB_XREF=gi:8086761 /DB_XREF=EST352248 /CLONE=RGIHK06 /FEA=EST /CNT=4 /TID=Rn.20338.1 /TIER=ConsEnd /STK=1 /UG=Rn.20338 /UG_TITLE=ESTs AW920944 1382424_at AI071713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071713 /DB_XREF=gi:3397928 /DB_XREF=UI-R-C2-nc-e-11-0-UI.s1 /CLONE=UI-R-C2-nc-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.21977.1 /TIER=ConsEnd /STK=1 /UG=Rn.21977 /UG_TITLE=ESTs AI071713 1382425_at AI236482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236482 /DB_XREF=gi:3829988 /DB_XREF=EST233044 /CLONE=ROVDG72 /FEA=EST /CNT=4 /TID=Rn.25530.1 /TIER=ConsEnd /STK=1 /UG=Rn.25530 /UG_TITLE=ESTs AI236482 cytochrome P450, family 19, subfamily a, polypeptide 1 Cyp19a1 25147 NM_017085 0006694 // steroid biosynthetic process // not recorded /// 0006703 // estrogen biosynthetic process // traceable author statement /// 0008152 // metabolic process // not recorded /// 0008209 // androgen metabolic process // not recorded /// 0050803 // regulation of synapse structure and activity // inferred from mutant phenotype /// 0060736 // prostate gland growth // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0008021 // synaptic vesicle // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from direct assay /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // not recorded /// 0020037 // heme binding // not recorded /// 0020037 // heme binding // inferred from electronic annotation /// 0070330 // aromatase activity // not recorded 1382426_at AA997406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997406 /DB_XREF=gi:4283313 /DB_XREF=UI-R-C0-hr-e-04-0-UI.s1 /CLONE=UI-R-C0-hr-e-04-0-UI /FEA=EST /CNT=4 /TID=Rn.12686.1 /TIER=ConsEnd /STK=1 /UG=Rn.12686 /UG_TITLE=ESTs, Highly similar to PRC6 RAT PROTEASOME SUBUNIT RC6-1 (R.norvegicus) AA997406 Similar to BC040823 protein RGD1563798 499950 XM_002726307 1382427_at BG373237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373237 /DB_XREF=gi:13269774 /DB_XREF=UI-R-CV1-brw-d-05-0-UI.s1 /CLONE=UI-R-CV1-brw-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.25288.1 /TIER=ConsEnd /STK=1 /UG=Rn.25288 /UG_TITLE=ESTs, Highly similar to T17204 hypothetical protein DKFZp566L083.1 (H.sapiens) BG373237 CGG triplet repeat binding protein 1 Cggbp1 288353 NM_001105900 0005634 // nucleus // not recorded 1382428_at AA925658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925658 /DB_XREF=gi:4236849 /DB_XREF=UI-R-A1-er-a-11-0-UI.s1 /CLONE=UI-R-A1-er-a-11-0-UI /FEA=EST /CNT=4 /TID=Rn.22314.1 /TIER=ConsEnd /STK=1 /UG=Rn.22314 /UG_TITLE=ESTs AA925658 taspase, threonine aspartase 1 Tasp1 311468 NM_001044243 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1382429_at AI059574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059574 /DB_XREF=gi:3333351 /DB_XREF=UI-R-C1-lj-d-07-0-UI.s1 /CLONE=UI-R-C1-lj-d-07-0-UI /FEA=EST /CNT=4 /TID=Rn.19215.1 /TIER=ConsEnd /STK=1 /UG=Rn.19215 /UG_TITLE=ESTs AI059574 1382430_at AI172357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172357 /DB_XREF=gi:3712397 /DB_XREF=EST218361 /CLONE=RMUBY29 /FEA=EST /CNT=4 /TID=Rn.9592.1 /TIER=ConsEnd /STK=1 /UG=Rn.9592 /UG_TITLE=ESTs AI172357 1382431_at AI103530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103530 /DB_XREF=gi:3708064 /DB_XREF=EST212819 /CLONE=REMCD13 /FEA=EST /CNT=4 /TID=Rn.3724.2 /TIER=ConsEnd /STK=1 /UG=Rn.3724 /UG_TITLE=ESTs AI103530 1382432_at AI030021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030021 /DB_XREF=gi:3247847 /DB_XREF=UI-R-C0-ja-d-02-0-UI.s1 /CLONE=UI-R-C0-ja-d-02-0-UI /FEA=EST /CNT=4 /TID=Rn.21546.1 /TIER=ConsEnd /STK=1 /UG=Rn.21546 /UG_TITLE=ESTs AI030021 1382433_at AW526548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526548 /DB_XREF=gi:7168927 /DB_XREF=UI-R-BO1-aix-h-09-0-UI.s1 /CLONE=UI-R-BO1-aix-h-09-0-UI /FEA=EST /CNT=4 /TID=Rn.28098.1 /TIER=ConsEnd /STK=1 /UG=Rn.28098 /UG_TITLE=ESTs AW526548 1382434_at AI059015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059015 /DB_XREF=gi:3332792 /DB_XREF=UI-R-C1-lq-f-03-0-UI.s1 /CLONE=UI-R-C1-lq-f-03-0-UI /FEA=EST /CNT=4 /TID=Rn.19447.1 /TIER=ConsEnd /STK=1 /UG=Rn.19447 /UG_TITLE=ESTs, Weakly similar to T23508 hypothetical protein K08H10.4 - Caenorhabditis elegans (C.elegans) AI059015 ectonucleoside triphosphate diphosphohydrolase 5 Entpd5 314312 NM_199394 0016787 // hydrolase activity // inferred from electronic annotation 1382435_at AA996835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996835 /DB_XREF=gi:4280599 /DB_XREF=UI-R-C0-hg-e-01-0-UI.s1 /CLONE=UI-R-C0-hg-e-01-0-UI /FEA=EST /CNT=4 /TID=Rn.41549.1 /TIER=ConsEnd /STK=1 /UG=Rn.41549 /UG_TITLE=ESTs, Weakly similar to B56021 probable cell division control protein p55CDC - rat (R.norvegicus) AA996835 fizzy/cell division cycle 20 related 1 (Drosophila) Fzr1 314642 NM_001108074 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0031572 // G2/M transition DNA damage checkpoint // not recorded /// 0040020 // regulation of meiosis // not recorded /// 0040020 // regulation of meiosis // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070306 // lens fiber cell differentiation // not recorded /// 0070306 // lens fiber cell differentiation // inferred from electronic annotation 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1382436_at BM386497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386497 /DB_XREF=gi:18186550 /DB_XREF=UI-R-CN1-cjg-k-15-0-UI.s1 /CLONE=UI-R-CN1-cjg-k-15-0-UI /FEA=EST /CNT=4 /TID=Rn.8881.1 /TIER=ConsEnd /STK=1 /UG=Rn.8881 /UG_TITLE=ESTs BM386497 similar to RIKEN cDNA 2610002M06 RGD1566265 363487 NM_001134589 0015031 // protein transport // inferred from electronic annotation 1382437_at BM383464 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383464 /DB_XREF=gi:18183517 /DB_XREF=UI-R-DM1-ckb-p-12-0-UI.s1 /CLONE=UI-R-DM1-ckb-p-12-0-UI /FEA=EST /CNT=4 /TID=Rn.12275.2 /TIER=ConsEnd /STK=1 /UG=Rn.12275 /UG_TITLE=ESTs BM383464 1382438_at BF393639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393639 /DB_XREF=gi:11378501 /DB_XREF=UI-R-CA0-bga-c-01-0-UI.s1 /CLONE=UI-R-CA0-bga-c-01-0-UI /FEA=EST /CNT=4 /TID=Rn.43466.1 /TIER=ConsEnd /STK=1 /UG=Rn.43466 /UG_TITLE=ESTs BF393639 1382439_at AI070686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070686 /DB_XREF=gi:3396937 /DB_XREF=UI-R-C2-mx-e-03-0-UI.s1 /CLONE=UI-R-C2-mx-e-03-0-UI /FEA=EST /CNT=4 /TID=Rn.19828.1 /TIER=ConsEnd /STK=1 /UG=Rn.19828 /UG_TITLE=ESTs, Weakly similar to PN0509 integrin beta-3 chain - rat (R.norvegicus) AI070686 integrin, beta 6 Itgb6 311061 NM_001004263 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation 0008305 // integrin complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005488 // binding // inferred from electronic annotation 1382440_at AI410813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410813 /DB_XREF=gi:4254317 /DB_XREF=EST239106 /CLONE=RHECZ60 /FEA=EST /CNT=4 /TID=Rn.44074.1 /TIER=ConsEnd /STK=1 /UG=Rn.44074 /UG_TITLE=ESTs AI410813 diacylglycerol lipase, beta Daglb 304289 NM_001107120 0006629 // lipid metabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004806 // triglyceride lipase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382441_at AI556402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556402 /DB_XREF=gi:4488765 /DB_XREF=UI-R-C2p-rh-b-09-0-UI.s1 /CLONE=UI-R-C2p-rh-b-09-0-UI /FEA=EST /CNT=4 /TID=Rn.23134.2 /TIER=ConsEnd /STK=1 /UG=Rn.23134 /UG_TITLE=ESTs AI556402 AT rich interactive domain 1B (Swi1 like) Arid1b 282546 NM_172157 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0016514 // SWI/SNF complex // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382442_at BF288000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288000 /DB_XREF=gi:11219070 /DB_XREF=EST452591 /CLONE=RGIGO01 /FEA=EST /CNT=4 /TID=Rn.20154.1 /TIER=ConsEnd /STK=1 /UG=Rn.20154 /UG_TITLE=ESTs, Highly similar to SEP6_MOUSE SEPTIN 6 (M.musculus) BF288000 septin 6 Sept6 691335 NM_001173429 /// XM_001077761 /// XM_002727663 0007049 // cell cycle // inferred from electronic annotation 0031105 // septin complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1382443_at BG376950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376950 /DB_XREF=gi:13301422 /DB_XREF=UI-R-CU0-bvl-d-08-0-UI.s1 /CLONE=UI-R-CU0-bvl-d-08-0-UI /FEA=EST /CNT=4 /TID=Rn.18118.1 /TIER=ConsEnd /STK=1 /UG=Rn.18118 /UG_TITLE=ESTs, Weakly similar to HUD RAT PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD HOMOLOG (R.norvegicus) BG376950 poly(A) binding protein, cytoplasmic 4 Pabpc4 298510 NM_001100538 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008143 // poly(A) RNA binding // not recorded /// 0008266 // poly(U) RNA binding // not recorded /// 0017130 // poly(C) RNA binding // not recorded 1382444_at AA925250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925250 /DB_XREF=gi:4236441 /DB_XREF=UI-R-A1-eh-h-10-0-UI.s1 /CLONE=UI-R-A1-eh-h-10-0-UI /FEA=EST /CNT=4 /TID=Rn.8243.1 /TIER=ConsEnd /STK=1 /UG=Rn.8243 /UG_TITLE=ESTs AA925250 1382445_at BF408094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408094 /DB_XREF=gi:11396069 /DB_XREF=UI-R-BJ2-bqz-f-07-0-UI.s1 /CLONE=UI-R-BJ2-bqz-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.12837.1 /TIER=ConsEnd /STK=1 /UG=Rn.12837 /UG_TITLE=ESTs BF408094 matrix-remodelling associated 7 Mxra7 690599 XM_001074923 /// XM_002724653 1382446_at AA799829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799829 /DB_XREF=gi:4131444 /DB_XREF=EST189326 /CLONE=RHEAF86 /FEA=EST /CNT=4 /TID=Rn.25181.1 /TIER=ConsEnd /STK=1 /UG=Rn.25181 /UG_TITLE=ESTs, Moderately similar to ATPW_HUMAN ATP SYNTHASE COUPLING FACTOR B, MITOCHONDRIAL PRECURSOR (H.sapiens) AA799829 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s (factor B) Atp5s 362749 NM_001007749 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation 1382447_at AI170441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170441 /DB_XREF=gi:3710481 /DB_XREF=EST216368 /CLONE=RLUCN38 /FEA=EST /CNT=4 /TID=Rn.22477.1 /TIER=ConsEnd /STK=1 /UG=Rn.22477 /UG_TITLE=ESTs AI170441 1382448_at AI071189 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071189 /DB_XREF=gi:3397404 /DB_XREF=UI-R-C2-my-g-04-0-UI.s1 /CLONE=UI-R-C2-my-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.21900.1 /TIER=ConsEnd /STK=1 /UG=Rn.21900 /UG_TITLE=ESTs AI071189 1382449_at AI230845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230845 /DB_XREF=gi:3814732 /DB_XREF=EST227540 /CLONE=REMDB89 /FEA=EST /CNT=4 /TID=Rn.24227.1 /TIER=ConsEnd /STK=1 /UG=Rn.24227 /UG_TITLE=ESTs AI230845 Ras association (RalGDS/AF-6) domain family member 1 Rassf1 363140 NM_001007754 /// NM_001037555 0006974 // response to DNA damage stimulus // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded /// 0007265 // Ras protein signal transduction // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0050821 // protein stabilization // not recorded /// 0071157 // negative regulation of cell cycle arrest // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1382450_at AA998804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998804 /DB_XREF=gi:4292388 /DB_XREF=UI-R-C0-ii-a-01-0-UI.s1 /CLONE=UI-R-C0-ii-a-01-0-UI /FEA=EST /CNT=4 /TID=Rn.23321.1 /TIER=ConsEnd /STK=1 /UG=Rn.23321 /UG_TITLE=ESTs AA998804 1382451_at BM385477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385477 /DB_XREF=gi:18185530 /DB_XREF=UI-R-DM1-cke-i-03-0-UI.s1 /CLONE=UI-R-DM1-cke-i-03-0-UI /FEA=EST /CNT=4 /TID=Rn.50368.1 /TIER=ConsEnd /STK=1 /UG=Rn.50368 /UG_TITLE=ESTs BM385477 heme binding protein 2 Hebp2 308632 NM_001107515 0005737 // cytoplasm // not recorded 1382452_at AI603408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI603408 /DB_XREF=gi:4612569 /DB_XREF=UI-R-AC1-xu-a-06-0-UI.s1 /CLONE=UI-R-AC1-xu-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.43712.1 /TIER=ConsEnd /STK=1 /UG=Rn.43712 /UG_TITLE=ESTs AI603408 serum deprivation response Sdpr 316384 NM_001007712 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0005901 // caveola // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0001786 // phosphatidylserine binding // not recorded /// 0001786 // phosphatidylserine binding // inferred from sequence or structural similarity /// 0001786 // phosphatidylserine binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation 1382453_at BE118707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118707 /DB_XREF=gi:8510812 /DB_XREF=UI-R-BS1-azr-g-09-0-UI.s1 /CLONE=UI-R-BS1-azr-g-09-0-UI /FEA=EST /CNT=4 /TID=Rn.64713.1 /TIER=ConsEnd /STK=1 /UG=Rn.64713 /UG_TITLE=ESTs BE118707 Zic family member 3 (odd-paired homolog, Drosophila) Zic3 367944 NM_001109019 0001947 // heart looping // not recorded /// 0007368 // determination of left/right symmetry // not recorded /// 0007389 // pattern specification process // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1382454_at AI044222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044222 /DB_XREF=gi:3291125 /DB_XREF=UI-R-C1-kb-c-09-0-UI.s2 /CLONE=UI-R-C1-kb-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.20735.1 /TIER=ConsEnd /STK=1 /UG=Rn.20735 /UG_TITLE=ESTs, Weakly similar to GROWTH REGULATED PROTEIN PRECURSOR (R.norvegicus) AI044222 chemokine (C-X-C motif) ligand 9 Cxcl9 246759 NM_145672 0006955 // immune response // inferred from electronic annotation /// 0050930 // induction of positive chemotaxis // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded 0008009 // chemokine activity // traceable author statement /// 0008009 // chemokine activity // inferred from electronic annotation /// 0048248 // CXCR3 chemokine receptor binding // traceable author statement 1382455_at BG379564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379564 /DB_XREF=gi:13304036 /DB_XREF=UI-R-CS0-bti-d-11-0-UI.s1 /CLONE=UI-R-CS0-bti-d-11-0-UI /FEA=EST /CNT=4 /TID=Rn.44977.1 /TIER=ConsEnd /STK=1 /UG=Rn.44977 /UG_TITLE=ESTs BG379564 1382456_at AA801402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA801402 /DB_XREF=gi:2864357 /DB_XREF=EST190899 /CLONE=RSPAA45 /FEA=EST /CNT=4 /TID=Rn.53927.1 /TIER=ConsEnd /STK=1 /UG=Rn.53927 /UG_TITLE=ESTs, Weakly similar to A60716 somatotropin intron-related protein RDE.25 - rat (R.norvegicus) AA801402 1382457_at AI029816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029816 /DB_XREF=gi:4301176 /DB_XREF=UI-R-C0-jn-d-01-0-UI.s1 /CLONE=UI-R-C0-jn-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.54682.1 /TIER=ConsEnd /STK=1 /UG=Rn.54682 /UG_TITLE=ESTs AI029816 KH domain containing, RNA binding, signal transduction associated 3 Khdrbs3 64015 NM_022249 0006350 // transcription // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0003727 // single-stranded RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation 1382458_at BF411815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411815 /DB_XREF=gi:11399804 /DB_XREF=UI-R-BT1-bmw-e-10-0-UI.s1 /CLONE=UI-R-BT1-bmw-e-10-0-UI /FEA=EST /CNT=4 /TID=Rn.21519.1 /TIER=ConsEnd /STK=1 /UG=Rn.21519 /UG_TITLE=ESTs BF411815 1382459_at BF287235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287235 /DB_XREF=gi:11218291 /DB_XREF=EST451812 /CLONE=RGIGD22 /FEA=EST /CNT=4 /TID=Rn.42781.2 /TIER=ConsEnd /STK=1 /UG=Rn.42781 /UG_TITLE=ESTs BF287235 spindle and kinetochore associated complex subunit 3 Ska3 361047 NM_001108379 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // not recorded /// 0007059 // chromosome segregation // inferred from sequence or structural similarity /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitosis // not recorded /// 0007067 // mitosis // inferred from sequence or structural similarity /// 0007067 // mitosis // inferred from electronic annotation /// 0031110 // regulation of microtubule polymerization or depolymerization // not recorded /// 0031110 // regulation of microtubule polymerization or depolymerization // inferred from sequence or structural similarity /// 0031110 // regulation of microtubule polymerization or depolymerization // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0000940 // condensed chromosome outer kinetochore // not recorded /// 0000940 // condensed chromosome outer kinetochore // inferred from sequence or structural similarity /// 0000940 // condensed chromosome outer kinetochore // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded /// 0005876 // spindle microtubule // inferred from sequence or structural similarity /// 0005876 // spindle microtubule // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382460_at AI229438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229438 /DB_XREF=gi:3813325 /DB_XREF=EST226133 /CLONE=REMCG36 /FEA=EST /CNT=4 /TID=Rn.24446.1 /TIER=ConsEnd /STK=1 /UG=Rn.24446 /UG_TITLE=ESTs AI229438 1382461_at AI101582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101582 /DB_XREF=gi:3706462 /DB_XREF=EST210871 /CLONE=RBRBS53 /FEA=EST /CNT=4 /TID=Rn.14954.1 /TIER=ConsEnd /STK=1 /UG=Rn.14954 /UG_TITLE=ESTs, Weakly similar to W06D4.4.p (Caenorhabditis elegans) (C.elegans) AI101582 protein arginine methyltransferase 7 Prmt7 361402 NM_001014153 0000387 // spliceosomal snRNP assembly // not recorded /// 0000387 // spliceosomal snRNP assembly // inferred from sequence or structural similarity /// 0000387 // spliceosomal snRNP assembly // inferred from electronic annotation /// 0006349 // regulation of gene expression by genetic imprinting // not recorded /// 0006349 // regulation of gene expression by genetic imprinting // inferred from sequence or structural similarity /// 0006349 // regulation of gene expression by genetic imprinting // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006479 // protein methylation // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016571 // histone methylation // not recorded /// 0016571 // histone methylation // inferred from electronic annotation /// 0018216 // peptidyl-arginine methylation // not recorded /// 0018216 // peptidyl-arginine methylation // inferred from sequence or structural similarity /// 0018216 // peptidyl-arginine methylation // inferred from electronic annotation /// 0019918 // peptidyl-arginine methylation, to symmetrical-dimethyl arginine // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0034969 // histone arginine methylation // not recorded /// 0034969 // histone arginine methylation // inferred from sequence or structural similarity /// 0034969 // histone arginine methylation // inferred from electronic annotation /// 0035246 // peptidyl-arginine N-methylation // not recorded /// 0043046 // DNA methylation involved in gamete generation // not recorded /// 0043046 // DNA methylation involved in gamete generation // inferred from sequence or structural similarity /// 0043046 // DNA methylation involved in gamete generation // inferred from electronic annotation /// 0043985 // histone H4-R3 methylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008276 // protein methyltransferase activity // inferred from electronic annotation /// 0008469 // histone-arginine N-methyltransferase activity // not recorded /// 0008469 // histone-arginine N-methyltransferase activity // inferred from electronic annotation /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from electronic annotation /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // not recorded /// 0016277 // [myelin basic protein]-arginine N-methyltransferase activity // inferred from electronic annotation /// 0016277 // [myelin basic protein]-arginine N-methyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0035241 // protein-arginine omega-N monomethyltransferase activity // inferred from electronic annotation /// 0035241 // protein-arginine omega-N monomethyltransferase activity // not recorded /// 0035243 // protein-arginine omega-N symmetric methyltransferase activity // not recorded /// 0035243 // protein-arginine omega-N symmetric methyltransferase activity // inferred from sequence or structural similarity /// 0035243 // protein-arginine omega-N symmetric methyltransferase activity // inferred from electronic annotation /// 0043021 // ribonucleoprotein binding // inferred from electronic annotation /// 0043021 // ribonucleoprotein binding // not recorded /// 0044020 // histone methyltransferase activity (H4-R3 specific) // not recorded /// 0044020 // histone methyltransferase activity (H4-R3 specific) // inferred from sequence or structural similarity /// 0044020 // histone methyltransferase activity (H4-R3 specific) // inferred from electronic annotation 1382462_at BF290937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290937 /DB_XREF=gi:11222007 /DB_XREF=EST455528 /CLONE=RGIIG54 /FEA=EST /CNT=4 /TID=Rn.22733.1 /TIER=ConsEnd /STK=1 /UG=Rn.22733 /UG_TITLE=ESTs BF290937 L-2-hydroxyglutarate dehydrogenase L2hgdh 314196 NM_001108028 0044267 // cellular protein metabolic process // not recorded 0005739 // mitochondrion // not recorded /// 0016021 // integral to membrane // not recorded 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0047545 // 2-hydroxyglutarate dehydrogenase activity // not recorded 1382463_at AI175104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175104 /DB_XREF=gi:3725742 /DB_XREF=EST218622 /CLONE=RMUCC44 /FEA=EST /CNT=4 /TID=Rn.19220.1 /TIER=ConsEnd /STK=1 /UG=Rn.19220 /UG_TITLE=ESTs AI175104 1382464_at BF547020 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547020 /DB_XREF=gi:11638127 /DB_XREF=UI-R-C1-ku-c-10-0-UI.r1 /CLONE=UI-R-C1-ku-c-10-0-UI /FEA=EST /CNT=4 /TID=Rn.29863.1 /TIER=ConsEnd /STK=1 /UG=Rn.29863 /UG_TITLE=ESTs BF547020 similar to ENSANGP00000021391 RGD1309779 363074 NM_001108766 1382465_at AW533397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533397 /DB_XREF=gi:7175811 /DB_XREF=UI-R-BU0-anb-d-10-0-UI.s1 /CLONE=UI-R-BU0-anb-d-10-0-UI /FEA=EST /CNT=4 /TID=Rn.37636.1 /TIER=ConsEnd /STK=1 /UG=Rn.37636 /UG_TITLE=ESTs, Highly similar to LIRTH hormone-sensitive lipase (R.norvegicus) AW533397 lipase, hormone sensitive Lipe 25330 NM_012859 0006361 // transcription initiation from RNA polymerase I promoter // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // traceable author statement /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from expression pattern /// 0007565 // female pregnancy // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // traceable author statement /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0019433 // triglyceride catabolic process // inferred from direct assay /// 0019433 // triglyceride catabolic process // not recorded /// 0019433 // triglyceride catabolic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // inferred from electronic annotation /// 0046340 // diacylglycerol catabolic process // inferred from electronic annotation /// 0046340 // diacylglycerol catabolic process // not recorded 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005811 // lipid particle // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from sequence or structural similarity /// 0005901 // caveola // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003716 // RNA polymerase I transcription termination factor activity // inferred from sequence or structural similarity /// 0004806 // triglyceride lipase activity // inferred from electronic annotation /// 0004806 // triglyceride lipase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016298 // lipase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from direct assay /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation /// 0033878 // hormone-sensitive lipase activity // inferred from electronic annotation /// 0042134 // rRNA primary transcript binding // inferred from sequence or structural similarity /// 0047372 // acylglycerol lipase activity // inferred from direct assay /// 0047372 // acylglycerol lipase activity // inferred from electronic annotation 1382466_at BF407231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407231 /DB_XREF=gi:11395206 /DB_XREF=UI-R-BJ2-bqc-c-01-0-UI.s1 /CLONE=UI-R-BJ2-bqc-c-01-0-UI /FEA=EST /CNT=4 /TID=Rn.39699.2 /TIER=ConsEnd /STK=1 /UG=Rn.39699 /UG_TITLE=ESTs BF407231 small nuclear ribonucleoprotein 48k (U11/U12) Snrnp48 291060 NM_001106107 0005689 // U12-type spliceosomal complex // not recorded 1382467_at C07140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:C07140 /DB_XREF=gi:1503916 /DB_XREF=C07140 /FEA=EST /CNT=4 /TID=Rn.33240.1 /TIER=ConsEnd /STK=1 /UG=Rn.33240 /UG_TITLE=ESTs, Weakly similar to C35826 hypothetical 13K protein A (H.sapiens) C07140 brain expressed gene 1 /// brain expressed X-linked 2 Bex1 /// Bex2 363498 /// 501625 NM_001037365 /// NM_001077435 0002052 // positive regulation of neuroblast proliferation // inferred from direct assay /// 0006915 // apoptosis // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from direct assay /// 0048011 // nerve growth factor receptor signaling pathway // inferred from genetic interaction 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382468_at AW143385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143385 /DB_XREF=gi:6163284 /DB_XREF=EST293681 /CLONE=RGIBO37 /FEA=EST /CNT=4 /TID=Rn.20455.1 /TIER=ConsEnd /STK=1 /UG=Rn.20455 /UG_TITLE=ESTs AW143385 similar to CG9752-PA RGD1311345 361201 NM_001173436 /// XM_001067219 /// XM_341483 1382469_at AA900787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900787 /DB_XREF=gi:4233282 /DB_XREF=UI-R-E0-dn-g-06-0-UI.s1 /CLONE=UI-R-E0-dn-g-06-0-UI /FEA=EST /CNT=4 /TID=Rn.15107.1 /TIER=ConsEnd /STK=1 /UG=Rn.15107 /UG_TITLE=ESTs AA900787 Family with sequence similarity 120C FAM120C 317423 XM_001068090 /// XM_228876 1382470_at AA955357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955357 /DB_XREF=gi:4237713 /DB_XREF=UI-R-A1-ey-b-08-0-UI.s1 /CLONE=UI-R-A1-ey-b-08-0-UI /FEA=EST /CNT=4 /TID=Rn.22746.1 /TIER=ConsEnd /STK=1 /UG=Rn.22746 /UG_TITLE=ESTs AA955357 1382471_at AI709698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709698 /DB_XREF=gi:4999474 /DB_XREF=UI-R-AG1-aah-e-02-0-UI.s1 /CLONE=UI-R-AG1-aah-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.12878.1 /TIER=ConsEnd /STK=1 /UG=Rn.12878 /UG_TITLE=ESTs AI709698 transmembrane protein 177 Tmem177 304735 NM_001037776 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1382472_at AI502459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502459 /DB_XREF=gi:4400310 /DB_XREF=UI-R-C1-jt-a-02-0-UI.s1 /CLONE=UI-R-C1-jt-a-02-0-UI /FEA=EST /CNT=4 /TID=Rn.36857.1 /TIER=ConsEnd /STK=1 /UG=Rn.36857 /UG_TITLE=ESTs AI502459 1382473_at AI070981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070981 /DB_XREF=gi:3397232 /DB_XREF=UI-R-C2-na-f-02-0-UI.s1 /CLONE=UI-R-C2-na-f-02-0-UI /FEA=EST /CNT=4 /TID=Rn.40319.1 /TIER=ConsEnd /STK=1 /UG=Rn.40319 /UG_TITLE=ESTs, Moderately similar to histone 2a (Rattus norvegicus) (R.norvegicus) AI070981 histone cluster 1, H4m Hist1h4m 291152 XM_001061900 /// XM_225382 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1382474_at AA819747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819747 /DB_XREF=gi:4228787 /DB_XREF=UI-R-A0-av-f-08-0-UI.s1 /CLONE=UI-R-A0-av-f-08-0-UI /FEA=EST /CNT=4 /TID=Rn.17566.1 /TIER=ConsEnd /STK=1 /UG=Rn.17566 /UG_TITLE=ESTs AA819747 collagen, type XIII, alpha 1 Col13a1 499431 NM_001109172 0001763 // morphogenesis of a branching structure // not recorded /// 0001958 // endochondral ossification // not recorded /// 0007160 // cell-matrix adhesion // not recorded /// 0016337 // cell-cell adhesion // not recorded 0005911 // cell-cell junction // not recorded 0005515 // protein binding // not recorded /// 0008201 // heparin binding // not recorded 1382475_at AI060133 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060133 /DB_XREF=gi:3333910 /DB_XREF=UI-R-C1-ll-c-05-0-UI.s1 /CLONE=UI-R-C1-ll-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.21184.1 /TIER=ConsEnd /STK=1 /UG=Rn.21184 /UG_TITLE=ESTs AI060133 1382476_x_at AI060133 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060133 /DB_XREF=gi:3333910 /DB_XREF=UI-R-C1-ll-c-05-0-UI.s1 /CLONE=UI-R-C1-ll-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.21184.1 /TIER=ConsEnd /STK=1 /UG=Rn.21184 /UG_TITLE=ESTs AI060133 1382477_at AW532560 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532560 /DB_XREF=gi:7175014 /DB_XREF=UI-R-BS0-amp-g-06-0-UI.s1 /CLONE=UI-R-BS0-amp-g-06-0-UI /FEA=EST /CNT=4 /TID=Rn.16099.1 /TIER=ConsEnd /STK=1 /UG=Rn.16099 /UG_TITLE=ESTs AW532560 1382478_at AI230481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230481 /DB_XREF=gi:3814368 /DB_XREF=EST227176 /CLONE=REMCX05 /FEA=EST /CNT=4 /TID=Rn.12235.1 /TIER=ConsEnd /STK=1 /UG=Rn.12235 /UG_TITLE=ESTs, Highly similar to T46484 hypothetical protein DKFZp434B055.1 (H.sapiens) AI230481 BTB (POZ) domain containing 3 Btbd3 311462 NM_001107782 0005515 // protein binding // inferred from electronic annotation 1382479_at AI029670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029670 /DB_XREF=gi:4300154 /DB_XREF=UI-R-C0-jg-g-09-0-UI.s1 /CLONE=UI-R-C0-jg-g-09-0-UI /FEA=EST /CNT=4 /TID=Rn.21533.1 /TIER=ConsEnd /STK=1 /UG=Rn.21533 /UG_TITLE=ESTs, Weakly similar to T46266 hypothetical protein DKFZp761A179.1 (H.sapiens) AI029670 leucine rich repeat containing 4C Lrrc4c 311236 NM_001107753 0050770 // regulation of axonogenesis // not recorded 0016020 // membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382480_at AI060139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060139 /DB_XREF=gi:3333916 /DB_XREF=UI-R-C1-ll-d-05-0-UI.s1 /CLONE=UI-R-C1-ll-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.6129.3 /TIER=ConsEnd /STK=1 /UG=Rn.6129 /UG_TITLE=ESTs, Weakly similar to T14171 ataxin-2 - mouse (M.musculus) AI060139 1382481_a_at BG372422 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372422 /DB_XREF=gi:13268959 /DB_XREF=UI-R-CV1-bsc-e-08-0-UI.s1 /CLONE=UI-R-CV1-bsc-e-08-0-UI /FEA=EST /CNT=1 /TID=Rn.66916.2 /TIER=ConsEnd /STK=1 /UG=Rn.66916 /UG_TITLE=ESTs BG372422 a disintegrin and metallopeptidase domain 33 (predicted)-like LOC100360676 100360676 XM_002729234 0006508 // proteolysis // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1382482_at AI178627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178627 /DB_XREF=gi:3729265 /DB_XREF=EST222307 /CLONE=RPLCT57 /FEA=EST /CNT=4 /TID=Rn.24188.1 /TIER=ConsEnd /STK=1 /UG=Rn.24188 /UG_TITLE=ESTs AI178627 1382483_at BF288281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288281 /DB_XREF=gi:11219351 /DB_XREF=EST452872 /CLONE=RGIGR88 /FEA=EST /CNT=4 /TID=Rn.6607.1 /TIER=ConsEnd /STK=1 /UG=Rn.6607 /UG_TITLE=ESTs BF288281 1382484_at AI408899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408899 /DB_XREF=gi:4252403 /DB_XREF=EST237190 /CLONE=ROVER46 /FEA=EST /CNT=4 /TID=Rn.12268.1 /TIER=ConsEnd /STK=1 /UG=Rn.12268 /UG_TITLE=ESTs AI408899 TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor LOC100360100 100360100 XM_002725301 /// XM_002728492 1382485_at BF285608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285608 /DB_XREF=gi:11216678 /DB_XREF=EST450199 /CLONE=RGIFH77 /FEA=EST /CNT=4 /TID=Rn.20948.1 /TIER=ConsEnd /STK=1 /UG=Rn.20948 /UG_TITLE=ESTs BF285608 1382486_at BI293827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293827 /DB_XREF=gi:14955694 /DB_XREF=UI-R-DK0-cdl-c-12-0-UI.s1 /CLONE=UI-R-DK0-cdl-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.27173.1 /TIER=ConsEnd /STK=1 /UG=Rn.27173 /UG_TITLE=ESTs, Weakly similar to JC5826 hydroxyacylglutathione hydrolase (EC 3.1.2.6) - rat (R.norvegicus) BI293827 hydroxyacylglutathione hydrolase-like Haghl 302995 NM_001013114 0004416 // hydroxyacylglutathione hydrolase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1382487_at AI500925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI500925 /DB_XREF=gi:4398776 /DB_XREF=UI-R-C2p-rn-e-10-0-UI.s1 /CLONE=UI-R-C2p-rn-e-10-0-UI /FEA=EST /CNT=4 /TID=Rn.14462.1 /TIER=ConsEnd /STK=1 /UG=Rn.14462 /UG_TITLE=ESTs AI500925 testis expressed 14 Tex14 287603 XM_001081119 /// XM_220825 0006468 // protein phosphorylation // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1382488_at BE102578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102578 /DB_XREF=gi:8494677 /DB_XREF=UI-R-BT1-aqo-e-03-0-UI.s1 /CLONE=UI-R-BT1-aqo-e-03-0-UI /FEA=EST /CNT=4 /TID=Rn.44014.1 /TIER=ConsEnd /STK=1 /UG=Rn.44014 /UG_TITLE=ESTs BE102578 ankyrin repeat domain 5 Ankrd5 296184 NM_001106516 0005509 // calcium ion binding // inferred from electronic annotation 1382489_at BE116698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116698 /DB_XREF=gi:8508803 /DB_XREF=UI-R-BS1-aye-c-07-0-UI.s1 /CLONE=UI-R-BS1-aye-c-07-0-UI /FEA=EST /CNT=4 /TID=Rn.52917.1 /TIER=ConsEnd /STK=1 /UG=Rn.52917 /UG_TITLE=ESTs, Weakly similar to WDR9_HUMAN WD-REPEAT PROTEIN 9 (H.sapiens) BE116698 similar to WD repeat domain 11 protein RGD1564964 315843 NM_001134564 1382490_at BF284288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284288 /DB_XREF=gi:11215358 /DB_XREF=EST448879 /CLONE=RGIEN86 /FEA=EST /CNT=4 /TID=Rn.22510.1 /TIER=ConsEnd /STK=1 /UG=Rn.22510 /UG_TITLE=ESTs BF284288 1382491_at AI555806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555806 /DB_XREF=gi:4488169 /DB_XREF=UI-R-C2p-qz-e-06-0-UI.s1 /CLONE=UI-R-C2p-qz-e-06-0-UI /FEA=EST /CNT=4 /TID=Rn.38745.1 /TIER=ConsEnd /STK=1 /UG=Rn.38745 /UG_TITLE=ESTs AI555806 family with sequence similarity 188, member B Fam188b 312365 XM_001058587 /// XM_231787 1382492_a_at AA866404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866404 /DB_XREF=gi:4230584 /DB_XREF=UI-R-A0-aj-h-02-0-UI.s3 /CLONE=UI-R-A0-aj-h-02-0-UI /FEA=EST /CNT=4 /TID=Rn.3094.1 /TIER=ConsEnd /STK=1 /UG=Rn.3094 /UG_TITLE=ESTs, Weakly similar to B Chain B, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex With Nadh And Estradiol (R.norvegicus) AA866404 hydroxysteroid (17-beta) dehydrogenase 8 Hsd17b8 361802 NM_212529 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006703 // estrogen biosynthetic process // not recorded /// 0006703 // estrogen biosynthetic process // inferred from sequence or structural similarity /// 0006703 // estrogen biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008209 // androgen metabolic process // inferred from electronic annotation /// 0008209 // androgen metabolic process // not recorded /// 0008210 // estrogen metabolic process // not recorded /// 0008210 // estrogen metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005740 // mitochondrial envelope // inferred from electronic annotation /// 0005740 // mitochondrial envelope // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // not recorded /// 0004303 // estradiol 17-beta-dehydrogenase activity // not recorded /// 0004303 // estradiol 17-beta-dehydrogenase activity // inferred from sequence or structural similarity /// 0004303 // estradiol 17-beta-dehydrogenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050327 // testosterone 17-beta-dehydrogenase activity // inferred from electronic annotation /// 0050327 // testosterone 17-beta-dehydrogenase activity // not recorded 1382493_at BG377427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377427 /DB_XREF=gi:13301899 /DB_XREF=UI-R-CU0-buy-d-11-0-UI.s1 /CLONE=UI-R-CU0-buy-d-11-0-UI /FEA=EST /CNT=4 /TID=Rn.41236.1 /TIER=ConsEnd /STK=1 /UG=Rn.41236 /UG_TITLE=ESTs, Weakly similar to PC4035 cell-cycle-dependent 350K nuclear protein (H.sapiens) BG377427 centromere protein F Cenpf 257649 NM_001100827 0000085 // G2 phase of mitotic cell cycle // not recorded /// 0000085 // G2 phase of mitotic cell cycle // inferred from sequence or structural similarity /// 0000087 // M phase of mitotic cell cycle // not recorded /// 0000087 // M phase of mitotic cell cycle // inferred from sequence or structural similarity /// 0000278 // mitotic cell cycle // not recorded /// 0000278 // mitotic cell cycle // inferred from sequence or structural similarity /// 0002724 // regulation of T cell cytokine production // inferred from electronic annotation /// 0002724 // regulation of T cell cytokine production // not recorded /// 0002730 // regulation of dendritic cell cytokine production // inferred from electronic annotation /// 0002730 // regulation of dendritic cell cytokine production // not recorded /// 0007059 // chromosome segregation // not recorded /// 0007059 // chromosome segregation // inferred from sequence or structural similarity /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0010389 // regulation of G2/M transition of mitotic cell cycle // inferred from electronic annotation /// 0010389 // regulation of G2/M transition of mitotic cell cycle // not recorded /// 0015031 // protein transport // not recorded /// 0016202 // regulation of striated muscle tissue development // not recorded /// 0016202 // regulation of striated muscle tissue development // inferred from sequence or structural similarity /// 0016202 // regulation of striated muscle tissue development // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0030885 // regulation of myeloid dendritic cell activation // inferred from electronic annotation /// 0030885 // regulation of myeloid dendritic cell activation // not recorded /// 0032386 // regulation of intracellular transport // inferred from electronic annotation /// 0032386 // regulation of intracellular transport // not recorded /// 0032886 // regulation of microtubule-based process // inferred from electronic annotation /// 0032886 // regulation of microtubule-based process // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045787 // positive regulation of cell cycle // inferred from electronic annotation /// 0045787 // positive regulation of cell cycle // not recorded /// 0048866 // stem cell fate specification // inferred from electronic annotation /// 0048866 // stem cell fate specification // not recorded /// 0050863 // regulation of T cell activation // inferred from electronic annotation /// 0050863 // regulation of T cell activation // not recorded /// 0051310 // metaphase plate congression // not recorded /// 0051310 // metaphase plate congression // inferred from sequence or structural similarity /// 0070201 // regulation of establishment of protein localization // inferred from electronic annotation /// 0070201 // regulation of establishment of protein localization // not recorded 0000775 // chromosome, centromeric region // not recorded /// 0000775 // chromosome, centromeric region // inferred from sequence or structural similarity /// 0000776 // kinetochore // inferred from electronic annotation /// 0000776 // kinetochore // not recorded /// 0000922 // spindle pole // not recorded /// 0000922 // spindle pole // inferred from sequence or structural similarity /// 0000940 // condensed chromosome outer kinetochore // not recorded /// 0000940 // condensed chromosome outer kinetochore // inferred from sequence or structural similarity /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005635 // nuclear envelope // inferred from sequence or structural similarity /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005819 // spindle // not recorded /// 0016363 // nuclear matrix // not recorded /// 0016363 // nuclear matrix // inferred from sequence or structural similarity /// 0030496 // midbody // not recorded /// 0045120 // pronucleus // inferred from electronic annotation /// 0045120 // pronucleus // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0055037 // recycling endosome // inferred from electronic annotation /// 0055037 // recycling endosome // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0045502 // dynein binding // not recorded /// 0045502 // dynein binding // inferred from sequence or structural similarity 1382494_at AA926196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926196 /DB_XREF=gi:4237387 /DB_XREF=UI-R-A1-ev-h-07-0-UI.s1 /CLONE=UI-R-A1-ev-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.24030.1 /TIER=ConsEnd /STK=1 /UG=Rn.24030 /UG_TITLE=ESTs AA926196 1382495_x_at AA926196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926196 /DB_XREF=gi:4237387 /DB_XREF=UI-R-A1-ev-h-07-0-UI.s1 /CLONE=UI-R-A1-ev-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.24030.1 /TIER=ConsEnd /STK=1 /UG=Rn.24030 /UG_TITLE=ESTs AA926196 1382496_at BI288517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288517 /DB_XREF=gi:14945181 /DB_XREF=UI-R-DK0-cdb-g-11-0-UI.s1 /CLONE=UI-R-DK0-cdb-g-11-0-UI /FEA=EST /CNT=4 /TID=Rn.21753.1 /TIER=ConsEnd /STK=1 /UG=Rn.21753 /UG_TITLE=ESTs BI288517 1382497_at AA875457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875457 /DB_XREF=gi:4231335 /DB_XREF=UI-R-E0-cp-b-11-0-UI.s1 /CLONE=UI-R-E0-cp-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.22875.1 /TIER=ConsEnd /STK=1 /UG=Rn.22875 /UG_TITLE=ESTs AA875457 1382498_x_at BF408710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408710 /DB_XREF=gi:11396685 /DB_XREF=UI-R-BT1-bnf-b-05-0-UI.s1 /CLONE=UI-R-BT1-bnf-b-05-0-UI /FEA=EST /CNT=4 /TID=Rn.7542.1 /TIER=ConsEnd /STK=1 /UG=Rn.7542 /UG_TITLE=ESTs BF408710 Ganglioside-induced differentiation-associated protein 1-like 1 Gdap1l1 311616 NM_001107798 1382499_at AA819839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819839 /DB_XREF=gi:4228094 /DB_XREF=UI-R-A0-ap-b-07-0-UI.s1 /CLONE=UI-R-A0-ap-b-07-0-UI /FEA=EST /CNT=4 /TID=Rn.16679.1 /TIER=ConsEnd /STK=1 /UG=Rn.16679 /UG_TITLE=ESTs AA819839 1382500_at BF408533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408533 /DB_XREF=gi:11396508 /DB_XREF=UI-R-BJ2-bre-h-07-0-UI.s1 /CLONE=UI-R-BJ2-bre-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.29107.1 /TIER=ConsEnd /STK=1 /UG=Rn.29107 /UG_TITLE=ESTs BF408533 1382501_at BG375021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375021 /DB_XREF=gi:13299493 /DB_XREF=UI-R-CV1-bst-b-11-0-UI.s1 /CLONE=UI-R-CV1-bst-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.24330.1 /TIER=ConsEnd /STK=1 /UG=Rn.24330 /UG_TITLE=ESTs BG375021 Similar to hypothetical protein MGC36831 RGD1306215 296565 NM_001106556 1382502_at BF286888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF286888 /DB_XREF=gi:11217958 /DB_XREF=EST451479 /CLONE=RGIFU12 /FEA=EST /CNT=4 /TID=Rn.13779.1 /TIER=ConsEnd /STK=1 /UG=Rn.13779 /UG_TITLE=ESTs BF286888 similar to RIKEN cDNA 9430015G10 RGD1311517 313775 NM_001014072 1382503_at BE109551 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109551 /DB_XREF=gi:8501656 /DB_XREF=UI-R-BJ1-avp-e-02-0-UI.s1 /CLONE=UI-R-BJ1-avp-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.23885.1 /TIER=ConsEnd /STK=1 /UG=Rn.23885 /UG_TITLE=ESTs, Highly similar to IRF2 MOUSE INTERFERON REGULATORY FACTOR 2 (M.musculus) BE109551 interferon regulatory factor 2 Irf2 290749 NM_001047086 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382504_at AI599104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599104 /DB_XREF=gi:4608152 /DB_XREF=EST250807 /CLONE=REMEA85 /FEA=EST /CNT=4 /TID=Rn.32434.2 /TIER=ConsEnd /STK=1 /UG=Rn.32434 /UG_TITLE=ESTs, Weakly similar to T46375 hypothetical protein DKFZp434D1319.1 (H.sapiens) AI599104 0006333 // chromatin assembly or disassembly // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1382505_at AA963719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963719 /DB_XREF=gi:4278662 /DB_XREF=UI-R-E1-gg-d-09-0-UI.s1 /CLONE=UI-R-E1-gg-d-09-0-UI /FEA=EST /CNT=4 /TID=Rn.23209.1 /TIER=ConsEnd /STK=1 /UG=Rn.23209 /UG_TITLE=ESTs AA963719 1382506_at AI044841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044841 /DB_XREF=gi:3291660 /DB_XREF=UI-R-C1-ki-h-02-0-UI.s1 /CLONE=UI-R-C1-ki-h-02-0-UI /FEA=EST /CNT=4 /TID=Rn.25052.1 /TIER=ConsEnd /STK=1 /UG=Rn.25052 /UG_TITLE=ESTs AI044841 1382507_at AW919878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919878 /DB_XREF=gi:8085682 /DB_XREF=EST351182 /CLONE=RGIGN93 /FEA=EST /CNT=4 /TID=Rn.55482.1 /TIER=ConsEnd /STK=1 /UG=Rn.55482 /UG_TITLE=ESTs, Moderately similar to TACT_HUMAN T-CELL SURFACE PROTEIN TACTILE PRECURSOR (H.sapiens) AW919878 CD96 molecule Cd96 498079 NM_001025032 0007155 // cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1382508_at AI228722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228722 /DB_XREF=gi:3812609 /DB_XREF=EST225417 /CLONE=RBRCY57 /FEA=EST /CNT=7 /TID=Rn.24353.1 /TIER=ConsEnd /STK=1 /UG=Rn.24353 /UG_TITLE=ESTs AI228722 ribosomal L1 domain containing 1 Rsl1d1 302898 NM_001008876 0006396 // RNA processing // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0032880 // regulation of protein localization // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1382509_at AA956256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956256 /DB_XREF=gi:4238650 /DB_XREF=UI-R-E1-fe-g-04-0-UI.s1 /CLONE=UI-R-E1-fe-g-04-0-UI /FEA=EST /CNT=6 /TID=Rn.9595.1 /TIER=ConsEnd /STK=1 /UG=Rn.9595 /UG_TITLE=ESTs AA956256 CCR4-NOT transcription complex, subunit 6 Cnot6 287249 NM_001013856 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382510_at BE105050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105050 /DB_XREF=gi:8497151 /DB_XREF=UI-R-BX0-asf-g-07-0-UI.s1 /CLONE=UI-R-BX0-asf-g-07-0-UI /FEA=EST /CNT=5 /TID=Rn.50713.1 /TIER=ConsEnd /STK=1 /UG=Rn.50713 /UG_TITLE=ESTs, Weakly similar to TMOD MOUSE TROPOMODULIN (M.musculus) BE105050 1382511_at AI713319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI713319 /DB_XREF=gi:5017119 /DB_XREF=UI-R-AB1-ys-g-12-0-UI.s2 /CLONE=UI-R-AB1-ys-g-12-0-UI /FEA=EST /CNT=5 /TID=Rn.72471.1 /TIER=ConsEnd /STK=1 /UG=Rn.72471 /UG_TITLE=ESTs AI713319 E2F transcription factor 1 E2f1 399489 NM_001100778 0000082 // G1/S transition of mitotic cell cycle // traceable author statement /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007283 // spermatogenesis // inferred from expression pattern /// 0010628 // positive regulation of gene expression // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048255 // mRNA stabilization // not recorded /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from direct assay /// 0071398 // cellular response to fatty acid // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay 1382512_at AA850695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850695 /DB_XREF=gi:4131876 /DB_XREF=EST193463 /CLONE=ROVAJ61 /FEA=EST /CNT=5 /TID=Rn.15683.1 /TIER=ConsEnd /STK=1 /UG=Rn.15683 /UG_TITLE=ESTs AA850695 1382513_at BF288995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288995 /DB_XREF=gi:11220065 /DB_XREF=EST453586 /CLONE=RGIHA05 /FEA=EST /CNT=5 /TID=Rn.29023.1 /TIER=ConsEnd /STK=1 /UG=Rn.29023 /UG_TITLE=ESTs BF288995 triggering receptor expressed on myeloid cells 2 Trem2 301227 NM_001106884 0005886 // plasma membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation 1382514_at AA997965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997965 /DB_XREF=gi:4286570 /DB_XREF=UI-R-C0-hu-a-06-0-UI.s1 /CLONE=UI-R-C0-hu-a-06-0-UI /FEA=EST /CNT=5 /TID=Rn.12826.1 /TIER=ConsEnd /STK=1 /UG=Rn.12826 /UG_TITLE=ESTs AA997965 1382515_at AI059408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059408 /DB_XREF=gi:3333185 /DB_XREF=UI-R-C1-le-h-06-0-UI.s1 /CLONE=UI-R-C1-le-h-06-0-UI /FEA=EST /CNT=4 /TID=Rn.63934.1 /TIER=ConsEnd /STK=1 /UG=Rn.63934 /UG_TITLE=ESTs, Weakly similar to F09G2.4.p (Caenorhabditis elegans) (C.elegans) AI059408 cleavage and polyadenylation specific factor 2 Cpsf2 299256 NM_001106753 0006398 // histone mRNA 3'-end processing // not recorded /// 0008380 // RNA splicing // not recorded 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1382516_at AI170660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170660 /DB_XREF=gi:3710700 /DB_XREF=EST216595 /CLONE=RMUAZ59 /FEA=EST /CNT=4 /TID=Rn.33832.1 /TIER=ConsEnd /STK=1 /UG=Rn.33832 /UG_TITLE=ESTs AI170660 1382517_at AW521327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521327 /DB_XREF=gi:7163705 /DB_XREF=UI-R-BO0-agl-c-04-0-UI.s1 /CLONE=UI-R-BO0-agl-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.45155.1 /TIER=ConsEnd /STK=1 /UG=Rn.45155 /UG_TITLE=ESTs AW521327 1382518_at BM386012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386012 /DB_XREF=gi:18186065 /DB_XREF=UI-R-DN1-ckf-l-15-0-UI.s1 /CLONE=UI-R-DN1-ckf-l-15-0-UI /FEA=EST /CNT=4 /TID=Rn.29943.1 /TIER=ConsEnd /STK=1 /UG=Rn.29943 /UG_TITLE=ESTs, Moderately similar to CN8A MOUSE HIGH-AFFINITY CAMP-SPECIFIC AND IBMX-INSENSITIVE 3,5-CYCLIC PHOSPHODIESTERASE 8A (M.musculus) BM386012 phosphodiesterase 8A Pde8a 308776 NM_198767 0000160 // two-component signal transduction system (phosphorelay) // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0000156 // two-component response regulator activity // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from electronic annotation /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382519_at BE103940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103940 /DB_XREF=gi:8496040 /DB_XREF=UI-R-BX0-arj-f-12-0-UI.s1 /CLONE=UI-R-BX0-arj-f-12-0-UI /FEA=EST /CNT=4 /TID=Rn.50581.1 /TIER=ConsEnd /STK=1 /UG=Rn.50581 /UG_TITLE=ESTs BE103940 limb and neural patterns Lnp 362151 NM_001077429 0007596 // blood coagulation // not recorded /// 0035115 // embryonic forelimb morphogenesis // not recorded /// 0042733 // embryonic digit morphogenesis // not recorded 0005515 // protein binding // not recorded 1382520_at AI008244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008244 /DB_XREF=gi:3222076 /DB_XREF=EST202695 /CLONE=REMAU88 /FEA=EST /CNT=4 /TID=Rn.13796.2 /TIER=ConsEnd /STK=1 /UG=Rn.13796 /UG_TITLE=ESTs AI008244 1382521_at AA925755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925755 /DB_XREF=gi:4236946 /DB_XREF=UI-R-A1-ep-g-01-0-UI.s1 /CLONE=UI-R-A1-ep-g-01-0-UI /FEA=EST /CNT=4 /TID=Rn.15596.1 /TIER=ConsEnd /STK=1 /UG=Rn.15596 /UG_TITLE=ESTs AA925755 glutaminase Gls 24398 NM_001109968 /// NM_012569 0002087 // regulation of respiratory gaseous exchange by neurological system process // not recorded /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0006543 // glutamine catabolic process // not recorded /// 0006543 // glutamine catabolic process // traceable author statement /// 0007268 // synaptic transmission // not recorded /// 0007610 // behavior // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation 0004359 // glutaminase activity // not recorded /// 0004359 // glutaminase activity // traceable author statement /// 0004359 // glutaminase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1382522_at AI169689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169689 /DB_XREF=gi:3709729 /DB_XREF=EST215584 /CLONE=RLIAR92 /FEA=EST /CNT=4 /TID=Rn.44201.1 /TIER=ConsEnd /STK=1 /UG=Rn.44201 /UG_TITLE=ESTs, Highly similar to MAT3_RAT MATRIN 3 (R.norvegicus) AI169689 1382523_at BF282274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282274 /DB_XREF=gi:11213458 /DB_XREF=EST446979 /CLONE=RGIDM83 /FEA=EST /CNT=4 /TID=Rn.55910.1 /TIER=ConsEnd /STK=1 /UG=Rn.55910 /UG_TITLE=ESTs BF282274 dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit Dpm1 296394 NM_001106544 0006506 // GPI anchor biosynthetic process // not recorded /// 0019348 // dolichol metabolic process // inferred from direct assay /// 0019348 // dolichol metabolic process // not recorded /// 0019673 // GDP-mannose metabolic process // inferred from direct assay /// 0035268 // protein mannosylation // not recorded /// 0035269 // protein O-linked mannosylation // not recorded 0005624 // membrane fraction // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0033185 // dolichol-phosphate-mannose synthase complex // not recorded 0004169 // dolichyl-phosphate-mannose-protein mannosyltransferase activity // not recorded /// 0004582 // dolichyl-phosphate beta-D-mannosyltransferase activity // inferred from direct assay /// 0004582 // dolichyl-phosphate beta-D-mannosyltransferase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005537 // mannose binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0043178 // alcohol binding // inferred from direct assay 1382524_at AA850361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850361 /DB_XREF=gi:2937901 /DB_XREF=EST193128 /CLONE=ROVAE86 /FEA=EST /CNT=4 /TID=Rn.24973.1 /TIER=ConsEnd /STK=1 /UG=Rn.24973 /UG_TITLE=ESTs AA850361 zinc finger and BTB domain containing 20 Zbtb20 288105 NM_001105880 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382525_at BI293269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293269 /DB_XREF=gi:14954613 /DB_XREF=UI-R-DK0-cdm-h-05-0-UI.s1 /CLONE=UI-R-DK0-cdm-h-05-0-UI /FEA=EST /CNT=4 /TID=Rn.56141.1 /TIER=ConsEnd /STK=1 /UG=Rn.56141 /UG_TITLE=ESTs BI293269 LY6/PLAUR domain containing 6B Lypd6b 362133 NM_001134580 1382526_at BF281921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281921 /DB_XREF=gi:11212991 /DB_XREF=EST446512 /CLONE=RGIBL18 /FEA=EST /CNT=4 /TID=Rn.11874.1 /TIER=ConsEnd /STK=1 /UG=Rn.11874 /UG_TITLE=ESTs BF281921 similar to RIKEN cDNA 1810074P20 RGD1309308 313115 NM_001126279 0031397 // negative regulation of protein ubiquitination // inferred from sequence or structural similarity /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity /// 0071569 // protein ufmylation // not recorded /// 0071569 // protein ufmylation // inferred from sequence or structural similarity /// 0071569 // protein ufmylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0071568 // UFM1 conjugating enzyme activity // not recorded /// 0071568 // UFM1 conjugating enzyme activity // inferred from sequence or structural similarity /// 0071568 // UFM1 conjugating enzyme activity // inferred from electronic annotation 1382527_at AI764706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764706 /DB_XREF=gi:5210641 /DB_XREF=UI-R-Y0-ace-b-04-0-UI.s1 /CLONE=UI-R-Y0-ace-b-04-0-UI /FEA=EST /CNT=4 /TID=Rn.39384.1 /TIER=ConsEnd /STK=1 /UG=Rn.39384 /UG_TITLE=ESTs AI764706 phosphatidylinositol-specific phospholipase C, X domain containing 2 Plcxd2 363781 NM_001134481 0006629 // lipid metabolic process // inferred from electronic annotation 0004629 // phospholipase C activity // inferred from electronic annotation /// 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation 1382528_at BF406412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406412 /DB_XREF=gi:11394387 /DB_XREF=UI-R-CA1-bjf-l-08-0-UI.s1 /CLONE=UI-R-CA1-bjf-l-08-0-UI /FEA=EST /CNT=4 /TID=Rn.6365.2 /TIER=ConsEnd /STK=1 /UG=Rn.6365 /UG_TITLE=ESTs BF406412 PARK2 co-regulated-like Pacrgl 360947 XM_001057772 /// XM_341225 0005488 // binding // inferred from electronic annotation 1382529_at AW531626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531626 /DB_XREF=gi:7174040 /DB_XREF=UI-R-C4-aky-b-04-0-UI.s1 /CLONE=UI-R-C4-aky-b-04-0-UI /FEA=EST /CNT=4 /TID=Rn.47784.1 /TIER=ConsEnd /STK=1 /UG=Rn.47784 /UG_TITLE=ESTs AW531626 1382530_at AI044286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044286 /DB_XREF=gi:3291189 /DB_XREF=UI-R-C1-kb-g-01-0-UI.s2 /CLONE=UI-R-C1-kb-g-01-0-UI /FEA=EST /CNT=4 /TID=Rn.12841.1 /TIER=ConsEnd /STK=1 /UG=Rn.12841 /UG_TITLE=ESTs AI044286 Required for meiotic nuclear division 5 homolog A (S. cerevisiae) Rmnd5a 312439 XM_002726419 /// XM_232051 1382531_at AI408425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408425 /DB_XREF=gi:4251929 /DB_XREF=EST236715 /CLONE=ROVEP26 /FEA=EST /CNT=4 /TID=Rn.14819.1 /TIER=ConsEnd /STK=1 /UG=Rn.14819 /UG_TITLE=ESTs AI408425 toll-like receptor 7 Tlr7 317468 NM_001097582 0002224 // toll-like receptor signaling pathway // inferred from direct assay /// 0002282 // microglial cell activation involved in immune response // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded /// 0007252 // I-kappaB phosphorylation // inferred from electronic annotation /// 0007252 // I-kappaB phosphorylation // not recorded /// 0032722 // positive regulation of chemokine production // inferred from electronic annotation /// 0032722 // positive regulation of chemokine production // not recorded /// 0032755 // positive regulation of interleukin-6 production // inferred from electronic annotation /// 0032755 // positive regulation of interleukin-6 production // not recorded /// 0032757 // positive regulation of interleukin-8 production // inferred from electronic annotation /// 0032757 // positive regulation of interleukin-8 production // not recorded /// 0034154 // toll-like receptor 7 signaling pathway // inferred from electronic annotation /// 0034154 // toll-like receptor 7 signaling pathway // not recorded /// 0042221 // response to chemical stimulus // inferred from direct assay /// 0042346 // positive regulation of NF-kappaB import into nucleus // inferred from electronic annotation /// 0042346 // positive regulation of NF-kappaB import into nucleus // not recorded /// 0045078 // positive regulation of interferon-gamma biosynthetic process // inferred from electronic annotation /// 0045078 // positive regulation of interferon-gamma biosynthetic process // not recorded /// 0045087 // innate immune response // inferred from electronic annotation /// 0045356 // positive regulation of interferon-alpha biosynthetic process // inferred from electronic annotation /// 0045356 // positive regulation of interferon-alpha biosynthetic process // not recorded /// 0045359 // positive regulation of interferon-beta biosynthetic process // inferred from electronic annotation /// 0045359 // positive regulation of interferon-beta biosynthetic process // not recorded /// 0045416 // positive regulation of interleukin-8 biosynthetic process // inferred from electronic annotation /// 0045416 // positive regulation of interleukin-8 biosynthetic process // not recorded /// 0051607 // defense response to virus // inferred from electronic annotation /// 0051607 // defense response to virus // not recorded /// 0052033 // pathogen-associated molecular pattern dependent induction by symbiont of host innate immunity // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0010008 // endosome membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031224 // intrinsic to membrane // inferred from electronic annotation /// 0032009 // early phagosome // inferred from electronic annotation /// 0032009 // early phagosome // not recorded 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // not recorded /// 0003727 // single-stranded RNA binding // inferred by curator /// 0003727 // single-stranded RNA binding // not recorded /// 0003727 // single-stranded RNA binding // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008144 // drug binding // inferred from direct assay /// 0035197 // siRNA binding // inferred from electronic annotation /// 0035197 // siRNA binding // not recorded 1382532_at BF284283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284283 /DB_XREF=gi:11215353 /DB_XREF=EST448874 /CLONE=RGIEN80 /FEA=EST /CNT=4 /TID=Rn.11639.1 /TIER=ConsEnd /STK=1 /UG=Rn.11639 /UG_TITLE=ESTs, Weakly similar to EL2 RAT ELASTASE 2 PRECURSOR (R.norvegicus) BF284283 chymotrypsin-like elastase family, member 3B Cela3b 298567 NM_001106692 0006508 // proteolysis // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1382533_at AI012699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012699 /DB_XREF=gi:3226531 /DB_XREF=EST207150 /CLONE=RPLBA60 /FEA=EST /CNT=4 /TID=Rn.3734.1 /TIER=ConsEnd /STK=1 /UG=Rn.3734 /UG_TITLE=ESTs, Moderately similar to A57088 nucleoporin-like protein Rab (H.sapiens) AI012699 ArfGAP with FG repeats 1 Agfg1 363266 NM_001135596 0001675 // acrosome assembly // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007289 // spermatid nucleus differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation /// 0045109 // intermediate filament organization // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382534_at BF284898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284898 /DB_XREF=gi:11215968 /DB_XREF=EST449489 /CLONE=RGIEX55 /FEA=EST /CNT=4 /TID=Rn.16900.1 /TIER=ConsEnd /STK=1 /UG=Rn.16900 /UG_TITLE=ESTs BF284898 1382535_at AI030942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030942 /DB_XREF=gi:3248768 /DB_XREF=UI-R-C0-jf-b-06-0-UI.s1 /CLONE=UI-R-C0-jf-b-06-0-UI /FEA=EST /CNT=4 /TID=Rn.21645.1 /TIER=ConsEnd /STK=1 /UG=Rn.21645 /UG_TITLE=ESTs AI030942 1382536_at BE109224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109224 /DB_XREF=gi:8501329 /DB_XREF=UI-R-BS1-azd-d-03-0-UI.s1 /CLONE=UI-R-BS1-azd-d-03-0-UI /FEA=EST /CNT=4 /TID=Rn.13313.2 /TIER=ConsEnd /STK=1 /UG=Rn.13313 /UG_TITLE=ESTs BE109224 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0016592 // mediator complex // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation 1382537_at AA899991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899991 /DB_XREF=gi:4232482 /DB_XREF=UI-R-E0-cr-d-03-0-UI.s2 /CLONE=UI-R-E0-cr-d-03-0-UI /FEA=EST /CNT=4 /TID=Rn.64265.1 /TIER=ConsEnd /STK=1 /UG=Rn.64265 /UG_TITLE=ESTs, Highly similar to T46254 hypothetical protein DKFZp761H171.1 (H.sapiens) AA899991 Ras-related GTP binding C Rragc 298514 NM_001048184 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0019003 // GDP binding // inferred from electronic annotation /// 0019003 // GDP binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1382538_at AI555902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555902 /DB_XREF=gi:4488265 /DB_XREF=UI-R-C2p-qx-g-03-0-UI.s1 /CLONE=UI-R-C2p-qx-g-03-0-UI /FEA=EST /CNT=4 /TID=Rn.54997.1 /TIER=ConsEnd /STK=1 /UG=Rn.54997 /UG_TITLE=ESTs AI555902 1382539_at AI171022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171022 /DB_XREF=gi:3711062 /DB_XREF=EST216969 /CLONE=RMUBF06 /FEA=EST /CNT=4 /TID=Rn.17426.2 /TIER=ConsEnd /STK=1 /UG=Rn.17426 /UG_TITLE=ESTs AI171022 1382540_at BI296328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296328 /DB_XREF=gi:14960657 /DB_XREF=UI-R-DK0-cez-b-03-0-UI.s1 /CLONE=UI-R-DK0-cez-b-03-0-UI /FEA=EST /CNT=4 /TID=Rn.47926.1 /TIER=ConsEnd /STK=1 /UG=Rn.47926 /UG_TITLE=ESTs BI296328 1382541_at BE103034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103034 /DB_XREF=gi:8495133 /DB_XREF=UI-R-BT1-aqr-f-03-0-UI.s1 /CLONE=UI-R-BT1-aqr-f-03-0-UI /FEA=EST /CNT=4 /TID=Rn.49133.1 /TIER=ConsEnd /STK=1 /UG=Rn.49133 /UG_TITLE=ESTs, Highly similar to T30200 protein-tyrosine kinase (M.musculus) BE103034 anaplastic lymphoma kinase Alk 266802 NM_001169101 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007399 // nervous system development // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from electronic annotation 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1382542_at BG668273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668273 /DB_XREF=gi:13890195 /DB_XREF=DRACOF06 /CLONE=DRACOF06 /FEA=EST /CNT=4 /TID=Rn.18578.1 /TIER=ConsEnd /STK=1 /UG=Rn.18578 /UG_TITLE=ESTs BG668273 1382543_at AA956828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956828 /DB_XREF=gi:4239302 /DB_XREF=UI-R-E1-ft-c-11-0-UI.s1 /CLONE=UI-R-E1-ft-c-11-0-UI /FEA=EST /CNT=4 /TID=Rn.23140.1 /TIER=ConsEnd /STK=1 /UG=Rn.23140 /UG_TITLE=ESTs AA956828 1382544_at AI058746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058746 /DB_XREF=gi:3332523 /DB_XREF=UI-R-C1-kp-e-06-0-UI.s1 /CLONE=UI-R-C1-kp-e-06-0-UI /FEA=EST /CNT=4 /TID=Rn.20986.1 /TIER=ConsEnd /STK=1 /UG=Rn.20986 /UG_TITLE=ESTs AI058746 1382545_at AI045469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045469 /DB_XREF=gi:3292288 /DB_XREF=UI-R-C1-jz-g-12-0-UI.s2 /CLONE=UI-R-C1-jz-g-12-0-UI /FEA=EST /CNT=4 /TID=Rn.16228.1 /TIER=ConsEnd /STK=1 /UG=Rn.16228 /UG_TITLE=ESTs AI045469 1382546_at AW920026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920026 /DB_XREF=gi:8085832 /DB_XREF=EST351330 /CLONE=RGIGP79 /FEA=EST /CNT=4 /TID=Rn.26980.1 /TIER=ConsEnd /STK=1 /UG=Rn.26980 /UG_TITLE=ESTs AW920026 PHD finger protein 11 Phf11 361051 NM_001024272 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382547_at AA859744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859744 /DB_XREF=gi:4230287 /DB_XREF=UI-R-E0-bx-b-10-0-UI.s1 /CLONE=UI-R-E0-bx-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.78.1 /TIER=ConsEnd /STK=1 /UG=Rn.78 /UG_TITLE=ESTs AA859744 1382548_at AI011760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011760 /DB_XREF=gi:3225592 /DB_XREF=EST206211 /CLONE=ROVAZ79 /FEA=EST /CNT=4 /TID=Rn.40321.1 /TIER=ConsEnd /STK=1 /UG=Rn.40321 /UG_TITLE=ESTs AI011760 1382549_at AI071736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071736 /DB_XREF=gi:3397951 /DB_XREF=UI-R-C2-nj-a-06-0-UI.s1 /CLONE=UI-R-C2-nj-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.20617.1 /TIER=ConsEnd /STK=1 /UG=Rn.20617 /UG_TITLE=ESTs AI071736 1382550_at AI071316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071316 /DB_XREF=gi:3397531 /DB_XREF=UI-R-C1-ko-e-11-0-UI.s2 /CLONE=UI-R-C1-ko-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.19958.1 /TIER=ConsEnd /STK=1 /UG=Rn.19958 /UG_TITLE=ESTs, Highly similar to K6A1_RAT Ribosomal protein S6 kinase alpha 1 (S6K-alpha 1) (90 kDa ribosomal protein S6 kinase 1) (p90-RSK 1) (Ribosomal S6 kinase 1) (RSK-1) (pp90RSK1) (R.norvegicus) AI071316 1382551_at BF417645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417645 /DB_XREF=gi:11405634 /DB_XREF=UI-R-CN0-blq-e-08-0-UI.s1 /CLONE=UI-R-CN0-blq-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.72639.1 /TIER=ConsEnd /STK=1 /UG=Rn.72639 /UG_TITLE=ESTs, Weakly similar to YNJ1_YEAST HYPOTHETICAL 141.5 KD PROTEIN IN YPT53-RHO2 INTERGENIC REGION (S.cerevisiae) BF417645 intersectin 2 Itsn2 313934 XM_001067254 /// XM_002730131 /// XM_002730132 /// XM_233945 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382552_at AW522677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522677 /DB_XREF=gi:7165062 /DB_XREF=UI-R-BO0-ahl-e-07-0-UI.s1 /CLONE=UI-R-BO0-ahl-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.45453.1 /TIER=ConsEnd /STK=1 /UG=Rn.45453 /UG_TITLE=ESTs, Highly similar to Y934_HUMAN HYPOTHETICAL PROTEIN KIAA0934 (H.sapiens) AW522677 DIP2 disco-interacting protein 2 homolog C (Drosophila) Dip2c 307067 NM_001107360 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation 1382553_at AI137120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137120 /DB_XREF=gi:3637897 /DB_XREF=UI-R-C2p-oe-e-08-0-UI.s1 /CLONE=UI-R-C2p-oe-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.23347.1 /TIER=ConsEnd /STK=1 /UG=Rn.23347 /UG_TITLE=ESTs, Highly similar to DNA BINDING PROTEIN RFX3 (M.musculus) AI137120 Regulatory factor X, 3 (influences HLA class II expression) Rfx3 361746 NM_001012172 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1382554_at AA998638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998638 /DB_XREF=gi:4291236 /DB_XREF=UI-R-C0-if-h-05-0-UI.s1 /CLONE=UI-R-C0-if-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.12926.1 /TIER=ConsEnd /STK=1 /UG=Rn.12926 /UG_TITLE=ESTs AA998638 complement component 8, alpha polypeptide C8a 298288 NM_001106670 0006956 // complement activation // not recorded /// 0019835 // cytolysis // inferred from direct assay 0005576 // extracellular region // not recorded /// 0005579 // membrane attack complex // not recorded /// 0005615 // extracellular space // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from direct assay 1382555_at BF407487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407487 /DB_XREF=gi:11395462 /DB_XREF=UI-R-BJ2-bqs-h-01-0-UI.s1 /CLONE=UI-R-BJ2-bqs-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.50093.1 /TIER=ConsEnd /STK=1 /UG=Rn.50093 /UG_TITLE=ESTs BF407487 1382556_a_at AI412140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412140 /DB_XREF=gi:4255644 /DB_XREF=EST240434 /CLONE=RKIEH04 /FEA=EST /CNT=3 /TID=Rn.19511.2 /TIER=ConsEnd /STK=1 /UG=Rn.19511 /UG_TITLE=ESTs AI412140 similar to DIP13 alpha RGD1309388 290537 XM_002725153 /// XM_002728373 1382557_at AA946491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946491 /DB_XREF=gi:4132821 /DB_XREF=EST201990 /CLONE=ROVAR74 /FEA=EST /CNT=3 /TID=Rn.55051.1 /TIER=ConsEnd /STK=1 /UG=Rn.55051 /UG_TITLE=ESTs AA946491 1382558_at AI045720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045720 /DB_XREF=gi:3292539 /DB_XREF=UI-R-C1-jy-c-11-0-UI.s2 /CLONE=UI-R-C1-jy-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.42554.1 /TIER=ConsEnd /STK=1 /UG=Rn.42554 /UG_TITLE=ESTs AI045720 transcription factor 3 Tcf3 312451 NM_001107865 0008595 // anterior/posterior axis specification, embryo // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0046022 // positive regulation of transcription from RNA polymerase II promoter during mitosis // not recorded /// 0048319 // axial mesoderm morphogenesis // not recorded /// 0048863 // stem cell differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0008013 // beta-catenin binding // not recorded 1382559_at AA957339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957339 /DB_XREF=gi:4277229 /DB_XREF=UI-R-E1-fu-h-07-0-UI.s1 /CLONE=UI-R-E1-fu-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.82416.1 /TIER=ConsEnd /STK=1 /UG=Rn.82416 /UG_TITLE=ESTs AA957339 paired box 9 Pax9 362741 NM_001039539 0006350 // transcription // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007492 // endoderm development // inferred from electronic annotation /// 0007492 // endoderm development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded 1382560_at AI176676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176676 /DB_XREF=gi:4134907 /DB_XREF=EST220269 /CLONE=ROVBV43 /FEA=EST /CNT=3 /TID=Rn.55658.1 /TIER=ConsEnd /STK=1 /UG=Rn.55658 /UG_TITLE=ESTs, Moderately similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) AI176676 1382561_at BF285103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285103 /DB_XREF=gi:11216173 /DB_XREF=EST449694 /CLONE=RGIFA48 /FEA=EST /CNT=3 /TID=Rn.41389.1 /TIER=ConsEnd /STK=1 /UG=Rn.41389 /UG_TITLE=ESTs BF285103 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1382562_at AI011209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011209 /DB_XREF=gi:3225041 /DB_XREF=EST205660 /CLONE=ROVAQ85 /FEA=EST /CNT=3 /TID=Rn.55588.1 /TIER=ConsEnd /STK=1 /UG=Rn.55588 /UG_TITLE=ESTs AI011209 1382563_at AI071510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071510 /DB_XREF=gi:3397725 /DB_XREF=UI-R-C2-nc-g-06-0-UI.s1 /CLONE=UI-R-C2-nc-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.52077.1 /TIER=ConsEnd /STK=1 /UG=Rn.52077 /UG_TITLE=ESTs AI071510 EP300 interacting inhibitor of differentiation 2B Eid2b 499112 XM_002725600 /// XM_574407 1382564_at AI233574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233574 /DB_XREF=gi:3817454 /DB_XREF=EST230262 /CLONE=RKIDH32 /FEA=EST /CNT=3 /TID=Rn.24739.1 /TIER=ConsEnd /STK=1 /UG=Rn.24739 /UG_TITLE=ESTs AI233574 1382565_at BE108260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108260 /DB_XREF=gi:8500365 /DB_XREF=UI-R-BS1-ayx-c-02-0-UI.s1 /CLONE=UI-R-BS1-ayx-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.55202.1 /TIER=ConsEnd /STK=1 /UG=Rn.55202 /UG_TITLE=ESTs BE108260 1382566_at AI071569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071569 /DB_XREF=gi:3397784 /DB_XREF=UI-R-C1-ky-f-03-0-UI.s2 /CLONE=UI-R-C1-ky-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.17789.1 /TIER=ConsEnd /STK=1 /UG=Rn.17789 /UG_TITLE=ESTs AI071569 interleukin 7 receptor Il7r 294797 NM_001106418 0000902 // cell morphogenesis // not recorded /// 0001915 // negative regulation of T cell mediated cytotoxicity // not recorded /// 0002377 // immunoglobulin production // not recorded /// 0008361 // regulation of cell size // not recorded /// 0016049 // cell growth // not recorded /// 0030217 // T cell differentiation // not recorded /// 0033089 // positive regulation of T cell differentiation in thymus // not recorded /// 0042100 // B cell proliferation // not recorded /// 0048535 // lymph node development // not recorded /// 0048872 // homeostasis of number of cells // not recorded 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382567_at AI013639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013639 /DB_XREF=gi:3227695 /DB_XREF=EST208314 /CLONE=RSPBR06 /FEA=EST /CNT=3 /TID=Rn.79444.1 /TIER=ConsEnd /STK=1 /UG=Rn.79444 /UG_TITLE=ESTs AI013639 1382568_at BE098457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098457 /DB_XREF=gi:8490321 /DB_XREF=UI-R-BJ1-atc-b-12-0-UI.s1 /CLONE=UI-R-BJ1-atc-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.49794.1 /TIER=ConsEnd /STK=1 /UG=Rn.49794 /UG_TITLE=ESTs BE098457 1382569_at BF386242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386242 /DB_XREF=gi:11371066 /DB_XREF=UI-R-CA1-bbc-c-07-0-UI.s1 /CLONE=UI-R-CA1-bbc-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.64169.1 /TIER=ConsEnd /STK=1 /UG=Rn.64169 /UG_TITLE=ESTs BF386242 Progestin and adipoQ receptor family member IX Paqr9 315904 XM_001068629 /// XM_236503 0016021 // integral to membrane // inferred from electronic annotation 1382570_at BF288039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288039 /DB_XREF=gi:11219109 /DB_XREF=EST452630 /CLONE=RGIGO73 /FEA=EST /CNT=3 /TID=Rn.55492.1 /TIER=ConsEnd /STK=1 /UG=Rn.55492 /UG_TITLE=ESTs BF288039 protein phosphatase 1, regulatory (inhibitor) subunit 12B Ppp1r12b 304813 NM_001107178 1382571_at AA925335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925335 /DB_XREF=gi:4236526 /DB_XREF=UI-R-A1-ee-a-03-0-UI.s1 /CLONE=UI-R-A1-ee-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.54842.1 /TIER=ConsEnd /STK=1 /UG=Rn.54842 /UG_TITLE=ESTs AA925335 1382572_at AI577469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577469 /DB_XREF=gi:4561845 /DB_XREF=UI-R-Y0-vj-b-10-0-UI.s1 /CLONE=UI-R-Y0-vj-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.37924.1 /TIER=ConsEnd /STK=1 /UG=Rn.37924 /UG_TITLE=ESTs AI577469 1382573_at AI233217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233217 /DB_XREF=gi:3817097 /DB_XREF=EST229905 /CLONE=RKIDC31 /FEA=EST /CNT=3 /TID=Rn.24705.1 /TIER=ConsEnd /STK=1 /UG=Rn.24705 /UG_TITLE=ESTs AI233217 1382574_at AI176776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176776 /DB_XREF=gi:3727414 /DB_XREF=EST220371 /CLONE=ROVBW65 /FEA=EST /CNT=3 /TID=Rn.55667.1 /TIER=ConsEnd /STK=1 /UG=Rn.55667 /UG_TITLE=ESTs, Highly similar to casein kinase 1 gamma 3 isoform (Rattus norvegicus) (R.norvegicus) AI176776 1382575_at BE118546 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118546 /DB_XREF=gi:8510651 /DB_XREF=UI-R-BJ1-azq-a-05-0-UI.s1 /CLONE=UI-R-BJ1-azq-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.25306.1 /TIER=ConsEnd /STK=1 /UG=Rn.25306 /UG_TITLE=ESTs BE118546 1382576_at BE349645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE349645 /DB_XREF=gi:9261498 /DB_XREF=hq41b03.x1 /CLONE=IMAGE:3121901 /FEA=EST /CNT=3 /TID=Rn.52410.1 /TIER=ConsEnd /STK=1 /UG=Rn.52410 /UG_TITLE=ESTs BE349645 tectonic 2 Tect2 689779 NM_001080782 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0033177 // proton-transporting two-sector ATPase complex, proton-transporting domain // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation 1382577_at AA818895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818895 /DB_XREF=gi:4227567 /DB_XREF=UI-R-A0-av-d-04-0-UI.s1 /CLONE=UI-R-A0-av-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.54583.1 /TIER=ConsEnd /STK=1 /UG=Rn.54583 /UG_TITLE=ESTs AA818895 septin 11 Sept11 305227 NM_001107208 0007049 // cell cycle // inferred from electronic annotation /// 0051291 // protein heterooligomerization // not recorded /// 0051301 // cell division // inferred from electronic annotation 0001725 // stress fiber // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0031105 // septin complex // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1382578_at AI178173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178173 /DB_XREF=gi:3728811 /DB_XREF=EST221838 /CLONE=RPLCN16 /FEA=EST /CNT=3 /TID=Rn.29185.1 /TIER=ConsEnd /STK=1 /UG=Rn.29185 /UG_TITLE=ESTs AI178173 1382579_at BE107165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107165 /DB_XREF=gi:8499270 /DB_XREF=UI-R-BS1-ayq-f-01-0-UI.s1 /CLONE=UI-R-BS1-ayq-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.51126.1 /TIER=ConsEnd /STK=1 /UG=Rn.51126 /UG_TITLE=ESTs BE107165 TOX high mobility group box family member 3 Tox3 291908 NM_001106171 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1382580_at AI555526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555526 /DB_XREF=gi:4487889 /DB_XREF=UI-R-C2p-qw-h-07-0-UI.s1 /CLONE=UI-R-C2p-qw-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.38384.1 /TIER=ConsEnd /STK=1 /UG=Rn.38384 /UG_TITLE=ESTs AI555526 1382581_at BF417773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417773 /DB_XREF=gi:11405762 /DB_XREF=UI-R-CN0-blx-a-06-0-UI.s1 /CLONE=UI-R-CN0-blx-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.63250.1 /TIER=ConsEnd /STK=1 /UG=Rn.63250 /UG_TITLE=ESTs, Highly similar to ets homologous factor (Mus musculus) (M.musculus) BF417773 ets homologous factor Ehf 295965 NM_001106493 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1382582_at BG381461 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381461 /DB_XREF=gi:13305933 /DB_XREF=UI-R-CT0-buj-f-02-0-UI.s1 /CLONE=UI-R-CT0-buj-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.66818.1 /TIER=ConsEnd /STK=1 /UG=Rn.66818 /UG_TITLE=ESTs BG381461 1382583_at AA899919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899919 /DB_XREF=gi:4232411 /DB_XREF=UI-R-E0-dh-e-11-0-UI.s1 /CLONE=UI-R-E0-dh-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.14998.1 /TIER=ConsEnd /STK=1 /UG=Rn.14998 /UG_TITLE=ESTs AA899919 1382584_at BE116720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116720 /DB_XREF=gi:8508825 /DB_XREF=UI-R-BS1-aye-e-07-0-UI.s1 /CLONE=UI-R-BS1-aye-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.52644.1 /TIER=ConsEnd /STK=1 /UG=Rn.52644 /UG_TITLE=ESTs BE116720 hypothetical protein LOC681371 LOC681371 681371 XR_085969 1382585_at AW529128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529128 /DB_XREF=gi:7171542 /DB_XREF=UI-R-BO1-ajp-d-04-0-UI.s1 /CLONE=UI-R-BO1-ajp-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.47096.1 /TIER=ConsEnd /STK=1 /UG=Rn.47096 /UG_TITLE=ESTs AW529128 1382586_at AW919926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919926 /DB_XREF=gi:8085730 /DB_XREF=EST351230 /CLONE=RGIGO62 /FEA=EST /CNT=3 /TID=Rn.56385.1 /TIER=ConsEnd /STK=1 /UG=Rn.56385 /UG_TITLE=ESTs AW919926 1382587_at AA901257 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901257 /DB_XREF=gi:4233758 /DB_XREF=UI-R-A1-dw-g-02-0-UI.s1 /CLONE=UI-R-A1-dw-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.40571.1 /TIER=ConsEnd /STK=1 /UG=Rn.40571 /UG_TITLE=ESTs AA901257 1382588_at AW532202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532202 /DB_XREF=gi:7174616 /DB_XREF=UI-R-C4-alj-e-11-0-UI.s1 /CLONE=UI-R-C4-alj-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.47900.1 /TIER=ConsEnd /STK=1 /UG=Rn.47900 /UG_TITLE=ESTs, Moderately similar to C181_HUMAN PROTEIN C18ORF1 (H.sapiens) AW532202 similar to Protein C18orf1 LOC679578 679578 XM_001053570 /// XM_002728561 1382589_at AI072262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072262 /DB_XREF=gi:3398456 /DB_XREF=UI-R-C2-ne-b-04-0-UI.s1 /CLONE=UI-R-C2-ne-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.20108.1 /TIER=ConsEnd /STK=1 /UG=Rn.20108 /UG_TITLE=ESTs AI072262 ankyrin repeat domain 55 Ankrd55 361898 XM_001066855 /// XM_342195 1382590_at BI277914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277914 /DB_XREF=gi:14924251 /DB_XREF=UI-R-CY0-bxw-a-06-0-UI.s1 /CLONE=UI-R-CY0-bxw-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.76744.1 /TIER=ConsEnd /STK=1 /UG=Rn.76744 /UG_TITLE=ESTs BI277914 raftlin lipid raft linker 1 Rftn1 501095 NM_001135011 1382591_at AI045562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045562 /DB_XREF=gi:3292381 /DB_XREF=UI-R-C1-kj-a-03-0-UI.s1 /CLONE=UI-R-C1-kj-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.23346.1 /TIER=ConsEnd /STK=1 /UG=Rn.23346 /UG_TITLE=ESTs AI045562 1382592_at AI059054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059054 /DB_XREF=gi:3332831 /DB_XREF=UI-R-C1-ks-c-12-0-UI.s1 /CLONE=UI-R-C1-ks-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.54949.1 /TIER=ConsEnd /STK=1 /UG=Rn.54949 /UG_TITLE=ESTs, Highly similar to T17319 hypothetical protein DKFZp434N178.1 (H.sapiens) AI059054 coiled-coil domain containing 99 Ccdc99 303037 NM_001034138 0000132 // establishment of mitotic spindle orientation // not recorded /// 0000132 // establishment of mitotic spindle orientation // inferred from sequence or structural similarity /// 0000132 // establishment of mitotic spindle orientation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007080 // mitotic metaphase plate congression // not recorded /// 0007080 // mitotic metaphase plate congression // inferred from sequence or structural similarity /// 0007080 // mitotic metaphase plate congression // inferred from electronic annotation /// 0034501 // protein localization to kinetochore // not recorded /// 0034501 // protein localization to kinetochore // inferred from sequence or structural similarity /// 0034501 // protein localization to kinetochore // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0000922 // spindle pole // not recorded /// 0000922 // spindle pole // inferred from sequence or structural similarity /// 0000922 // spindle pole // inferred from electronic annotation /// 0000940 // condensed chromosome outer kinetochore // not recorded /// 0000940 // condensed chromosome outer kinetochore // inferred from sequence or structural similarity /// 0000940 // condensed chromosome outer kinetochore // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043515 // kinetochore binding // not recorded /// 0043515 // kinetochore binding // inferred from sequence or structural similarity /// 0043515 // kinetochore binding // inferred from electronic annotation 1382593_at AA963276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963276 /DB_XREF=gi:4278200 /DB_XREF=UI-R-E1-gh-g-11-0-UI.s1 /CLONE=UI-R-E1-gh-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.76536.1 /TIER=ConsEnd /STK=1 /UG=Rn.76536 /UG_TITLE=ESTs AA963276 ets variant 1 Etv1 362733 NM_001108709 /// NM_001163156 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007517 // muscle organ development // not recorded /// 0007638 // mechanosensory behavior // not recorded /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1382594_at AI113090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113090 /DB_XREF=gi:3513039 /DB_XREF=UI-R-E1-fm-c-06-0-UI.s1 /CLONE=UI-R-E1-fm-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.23634.1 /TIER=ConsEnd /STK=1 /UG=Rn.23634 /UG_TITLE=ESTs AI113090 1382595_at BF289213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289213 /DB_XREF=gi:11220283 /DB_XREF=EST453804 /CLONE=RGIHC39 /FEA=EST /CNT=3 /TID=Rn.25298.1 /TIER=ConsEnd /STK=1 /UG=Rn.25298 /UG_TITLE=ESTs BF289213 1382596_a_at AI230388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230388 /DB_XREF=gi:3814275 /DB_XREF=EST227083 /CLONE=REMCV91 /FEA=EST /CNT=3 /TID=Rn.33600.1 /TIER=ConsEnd /STK=1 /UG=Rn.33600 /UG_TITLE=ESTs AI230388 transmembrane protein 214 Tmem214 362711 NM_001014195 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382597_at BF288069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288069 /DB_XREF=gi:11219139 /DB_XREF=EST452660 /CLONE=RGIGP16 /FEA=EST /CNT=3 /TID=Rn.43970.1 /TIER=ConsEnd /STK=1 /UG=Rn.43970 /UG_TITLE=ESTs BF288069 1382598_at BE111342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111342 /DB_XREF=gi:8503447 /DB_XREF=UI-R-BJ1-ava-f-09-0-UI.s1 /CLONE=UI-R-BJ1-ava-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.879.2 /TIER=ConsEnd /STK=1 /UG=Rn.879 /UG_TITLE=ESTs BE111342 heat shock transcription factor 2 Hsf2 64441 NM_031694 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0045449 // regulation of transcription // non-traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1382599_at BE103520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103520 /DB_XREF=gi:8495619 /DB_XREF=UI-R-BX0-ard-b-01-0-UI.s1 /CLONE=UI-R-BX0-ard-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.25124.3 /TIER=ConsEnd /STK=1 /UG=Rn.25124 /UG_TITLE=ESTs BE103520 1382600_at AA958022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA958022 /DB_XREF=gi:4277912 /DB_XREF=UI-R-E1-gc-h-11-0-UI.s1 /CLONE=UI-R-E1-gc-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.23004.1 /TIER=ConsEnd /STK=1 /UG=Rn.23004 /UG_TITLE=ESTs AA958022 1382601_at AI237698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237698 /DB_XREF=gi:3831204 /DB_XREF=EST234260 /CLONE=RPLDC73 /FEA=EST /CNT=3 /TID=Rn.25444.1 /TIER=ConsEnd /STK=1 /UG=Rn.25444 /UG_TITLE=ESTs AI237698 1382602_at BE120211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120211 /DB_XREF=gi:8512316 /DB_XREF=UI-R-CA0-bap-h-01-0-UI.s1 /CLONE=UI-R-CA0-bap-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.53485.1 /TIER=ConsEnd /STK=1 /UG=Rn.53485 /UG_TITLE=ESTs BE120211 similar to zinc finger protein 650 RGD1565257 311115 NM_001134550 1382603_at AW521319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521319 /DB_XREF=gi:7163697 /DB_XREF=UI-R-BO0-agl-b-07-0-UI.s1 /CLONE=UI-R-BO0-agl-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.45153.1 /TIER=ConsEnd /STK=1 /UG=Rn.45153 /UG_TITLE=ESTs AW521319 1382604_at BE117925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117925 /DB_XREF=gi:8510030 /DB_XREF=UI-R-BS1-azm-e-12-0-UI.s1 /CLONE=UI-R-BS1-azm-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.52926.1 /TIER=ConsEnd /STK=1 /UG=Rn.52926 /UG_TITLE=ESTs BE117925 polymerase (RNA) III (DNA directed) polypeptide G Polr3g 685465 NM_001109468 0032728 // positive regulation of interferon-beta production // not recorded /// 0045089 // positive regulation of innate immune response // not recorded 1382605_at AI234026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234026 /DB_XREF=gi:3817906 /DB_XREF=EST230714 /CLONE=RLUCU26 /FEA=EST /CNT=3 /TID=Rn.11455.2 /TIER=ConsEnd /STK=1 /UG=Rn.11455 /UG_TITLE=ESTs AI234026 1382606_at BF285438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285438 /DB_XREF=gi:11216598 /DB_XREF=EST450119 /CLONE=RGIFH14 /FEA=EST /CNT=3 /TID=Rn.7666.1 /TIER=ConsEnd /STK=1 /UG=Rn.7666 /UG_TITLE=ESTs BF285438 1382607_at AA925323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925323 /DB_XREF=gi:4236514 /DB_XREF=UI-R-A1-ek-g-11-0-UI.s1 /CLONE=UI-R-A1-ek-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.15497.1 /TIER=ConsEnd /STK=1 /UG=Rn.15497 /UG_TITLE=ESTs AA925323 1382608_at BI281712 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281712 /DB_XREF=gi:14931731 /DB_XREF=UI-R-CT0s-cav-f-01-0-UI.s1 /CLONE=UI-R-CT0s-cav-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.44972.1 /TIER=ConsEnd /STK=1 /UG=Rn.44972 /UG_TITLE=ESTs, Weakly similar to ACTA_HUMAN ACTIN, AORTIC SMOOTH MUSCLE (R.norvegicus) BI281712 actin-like 6B Actl6b 288563 NM_001105917 0006350 // transcription // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016514 // SWI/SNF complex // inferred from electronic annotation /// 0016514 // SWI/SNF complex // not recorded /// 0071565 // nBAF complex // not recorded /// 0071565 // nBAF complex // inferred from sequence or structural similarity /// 0071565 // nBAF complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1382609_at AI058451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058451 /DB_XREF=gi:3332228 /DB_XREF=UI-R-C1-kn-h-09-0-UI.s1 /CLONE=UI-R-C1-kn-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.17318.2 /TIER=ConsEnd /STK=1 /UG=Rn.17318 /UG_TITLE=ESTs AI058451 Insulin-like growth factor 2 mRNA binding protein 2 Igf2bp2 303824 XM_001057936 /// XM_002724764 /// XM_002727904 /// XM_221343 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0044430 // cytoskeletal part // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // not recorded /// 0005515 // protein binding // not recorded /// 0048027 // mRNA 5'-UTR binding // not recorded 1382610_at AA957105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957105 /DB_XREF=gi:4239578 /DB_XREF=UI-R-E1-fs-e-02-0-UI.s1 /CLONE=UI-R-E1-fs-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.23188.2 /TIER=ConsEnd /STK=1 /UG=Rn.23188 /UG_TITLE=ESTs AA957105 1382611_at AA945938 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945938 /DB_XREF=gi:4132647 /DB_XREF=EST201437 /CLONE=RLUAZ23 /FEA=EST /CNT=3 /TID=Rn.24100.1 /TIER=ConsEnd /STK=1 /UG=Rn.24100 /UG_TITLE=ESTs AA945938 1382612_at BF395928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395928 /DB_XREF=gi:11380899 /DB_XREF=UI-R-BS2-bdt-b-07-0-UI.s1 /CLONE=UI-R-BS2-bdt-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.11759.1 /TIER=ConsEnd /STK=1 /UG=Rn.11759 /UG_TITLE=ESTs BF395928 1382613_at AW144049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144049 /DB_XREF=gi:6163948 /DB_XREF=EST294345 /CLONE=RGICG11 /FEA=EST /CNT=3 /TID=Rn.24594.1 /TIER=ConsEnd /STK=1 /UG=Rn.24594 /UG_TITLE=ESTs AW144049 1382614_at AI029732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029732 /DB_XREF=gi:4300588 /DB_XREF=UI-R-C0-jg-c-03-0-UI.s1 /CLONE=UI-R-C0-jg-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.78858.1 /TIER=ConsEnd /STK=1 /UG=Rn.78858 /UG_TITLE=ESTs AI029732 zinc finger, FYVE domain containing 16 Zfyve16 499508 NM_001191958 /// XM_001058708 /// XM_574833 0006622 // protein targeting to lysosome // not recorded /// 0016197 // endosome transport // not recorded /// 0030509 // BMP signaling pathway // not recorded 0005769 // early endosome // not recorded /// 0031901 // early endosome membrane // not recorded 0005515 // protein binding // not recorded /// 0005545 // phosphatidylinositol binding // not recorded /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008565 // protein transporter activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1382615_at BI284366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284366 /DB_XREF=gi:14936979 /DB_XREF=UI-R-CX0s-cco-c-10-0-UI.s1 /CLONE=UI-R-CX0s-cco-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.74724.1 /TIER=ConsEnd /STK=1 /UG=Rn.74724 /UG_TITLE=ESTs, Highly similar to S61A RAT PROTEIN TRANSPORT PROTEIN SEC61 ALPHA SUBUNIT (R.norvegicus) BI284366 Sec61 alpha 1 subunit (S. cerevisiae) Sec61a1 80843 NM_199256 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0034341 // response to interferon-gamma // inferred from expression pattern /// 0055085 // transmembrane transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019718 // rough microsome // inferred from direct assay 0005515 // protein binding // not recorded /// 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from electronic annotation /// 0043022 // ribosome binding // inferred from electronic annotation /// 0043022 // ribosome binding // not recorded 1382616_at AI177367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177367 /DB_XREF=gi:3728005 /DB_XREF=EST220986 /CLONE=RPLBY21 /FEA=EST /CNT=3 /TID=Rn.36961.1 /TIER=ConsEnd /STK=1 /UG=Rn.36961 /UG_TITLE=ESTs, Weakly similar to A41009 glutaminase (R.norvegicus) AI177367 glutaminase Gls 24398 NM_001109968 /// NM_012569 0002087 // regulation of respiratory gaseous exchange by neurological system process // not recorded /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0006543 // glutamine catabolic process // not recorded /// 0006543 // glutamine catabolic process // traceable author statement /// 0007268 // synaptic transmission // not recorded /// 0007610 // behavior // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation 0004359 // glutaminase activity // not recorded /// 0004359 // glutaminase activity // traceable author statement /// 0004359 // glutaminase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1382617_at BE120507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120507 /DB_XREF=gi:8512612 /DB_XREF=UI-R-CA0-bat-c-06-0-UI.s1 /CLONE=UI-R-CA0-bat-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.67733.1 /TIER=ConsEnd /STK=1 /UG=Rn.67733 /UG_TITLE=ESTs BE120507 CUE domain containing 1 Cuedc1 303419 NM_001013971 1382618_at AI103100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103100 /DB_XREF=gi:3704826 /DB_XREF=EST212389 /CLONE=REMBX27 /FEA=EST /CNT=3 /TID=Rn.23855.1 /TIER=ConsEnd /STK=1 /UG=Rn.23855 /UG_TITLE=ESTs, Weakly similar to 2013370A GTP-binding protein Gh (R.norvegicus) AI103100 erythrocyte protein band 4.2 Epb4.2 362202 NM_001108590 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0018149 // peptide cross-linking // inferred from electronic annotation /// 0020027 // hemoglobin metabolic process // inferred from electronic annotation /// 0020027 // hemoglobin metabolic process // not recorded /// 0048536 // spleen development // inferred from electronic annotation /// 0048536 // spleen development // not recorded /// 0050801 // ion homeostasis // inferred from electronic annotation /// 0050801 // ion homeostasis // not recorded /// 0055072 // iron ion homeostasis // inferred from electronic annotation /// 0055072 // iron ion homeostasis // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // not recorded 0003810 // protein-glutamine gamma-glutamyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382619_at AI072460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072460 /DB_XREF=gi:3398654 /DB_XREF=UI-R-C2-nk-h-01-0-UI.s1 /CLONE=UI-R-C2-nk-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.19933.1 /TIER=ConsEnd /STK=1 /UG=Rn.19933 /UG_TITLE=ESTs AI072460 1382620_at BF523248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523248 /DB_XREF=gi:11631215 /DB_XREF=UI-R-C3-ti-h-08-0-UI.r1 /CLONE=UI-R-C3-ti-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.49032.1 /TIER=ConsEnd /STK=1 /UG=Rn.49032 /UG_TITLE=ESTs, Weakly similar to T33457 hypothetical protein F36H12.3 - Caenorhabditis elegans (C.elegans) BF523248 1382621_at AI454799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454799 /DB_XREF=gi:4296252 /DB_XREF=UI-R-C2p-qm-e-05-0-UI.s1 /CLONE=UI-R-C2p-qm-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.24270.1 /TIER=ConsEnd /STK=1 /UG=Rn.24270 /UG_TITLE=ESTs, Weakly similar to T17338 hypothetical protein DKFZp434O125.1 (H.sapiens) AI454799 DDB1 and CUL4 associated factor 12-like 1 Dcaf12l1 313296 NM_001107941 1382622_at AI502757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502757 /DB_XREF=gi:4400608 /DB_XREF=UI-R-C1-lb-g-10-0-UI.s1 /CLONE=UI-R-C1-lb-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.24282.1 /TIER=ConsEnd /STK=1 /UG=Rn.24282 /UG_TITLE=ESTs, Weakly similar to CYSTATIN C PRECURSOR (R.norvegicus) AI502757 cystatin F (leukocystatin) Cst7 296257 NM_001106523 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation 1382623_at AI409262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409262 /DB_XREF=gi:4252766 /DB_XREF=EST237554 /CLONE=ROVEM37 /FEA=EST /CNT=3 /TID=Rn.43211.1 /TIER=ConsEnd /STK=1 /UG=Rn.43211 /UG_TITLE=ESTs AI409262 Ras homolog enriched in brain like 1 Rhebl1 359959 NM_182825 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0031929 // TOR signaling cascade // inferred from electronic annotation /// 0031929 // TOR signaling cascade // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded 1382624_at AA858768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858768 /DB_XREF=gi:4228961 /DB_XREF=UI-R-A0-bb-g-02-0-UI.s1 /CLONE=UI-R-A0-bb-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.16895.1 /TIER=ConsEnd /STK=1 /UG=Rn.16895 /UG_TITLE=ESTs AA858768 1382625_at BE101437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101437 /DB_XREF=gi:8493352 /DB_XREF=UI-R-BJ1-auj-a-04-0-UI.s1 /CLONE=UI-R-BJ1-auj-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.19235.1 /TIER=ConsEnd /STK=1 /UG=Rn.19235 /UG_TITLE=ESTs BE101437 1382626_at AW528353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528353 /DB_XREF=gi:7170767 /DB_XREF=UI-R-BT1-ajx-e-04-0-UI.s1 /CLONE=UI-R-BT1-ajx-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.46849.1 /TIER=ConsEnd /STK=1 /UG=Rn.46849 /UG_TITLE=ESTs AW528353 1382627_at AA956525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956525 /DB_XREF=gi:4238999 /DB_XREF=UI-R-E1-fn-a-12-0-UI.s1 /CLONE=UI-R-E1-fn-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.58491.1 /TIER=ConsEnd /STK=1 /UG=Rn.58491 /UG_TITLE=ESTs, Moderately similar to A56208 DNA-binding protein SATB1 - mouse (M.musculus) AA956525 1382628_at BE111904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111904 /DB_XREF=gi:8504009 /DB_XREF=UI-R-BS1-azu-c-12-0-UI.s1 /CLONE=UI-R-BS1-azu-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.76240.1 /TIER=ConsEnd /STK=1 /UG=Rn.76240 /UG_TITLE=ESTs BE111904 1382629_at BM383809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383809 /DB_XREF=gi:18183862 /DB_XREF=UI-R-DM1-ckb-l-11-0-UI.s1 /CLONE=UI-R-DM1-ckb-l-11-0-UI /FEA=EST /CNT=3 /TID=Rn.43810.1 /TIER=ConsEnd /STK=1 /UG=Rn.43810 /UG_TITLE=ESTs BM383809 fatty acyl CoA reductase 1 Far1 293173 NM_001011933 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0010025 // wax biosynthetic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005777 // peroxisome // inferred from electronic annotation /// 0005777 // peroxisome // not recorded /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0005782 // peroxisomal matrix // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // not recorded /// 0016620 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0050062 // long-chain-fatty-acyl-CoA reductase activity // not recorded 1382630_at BI302656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302656 /DB_XREF=gi:14978941 /DB_XREF=UI-R-DO0-cix-d-22-0-UI.s1 /CLONE=UI-R-DO0-cix-d-22-0-UI /FEA=EST /CNT=3 /TID=Rn.16095.1 /TIER=ConsEnd /STK=1 /UG=Rn.16095 /UG_TITLE=ESTs BI302656 similar to 4930506M07Rik protein RGD1311558 292139 NM_001079705 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from mutant phenotype 0005829 // cytosol // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 1382631_at AI454735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454735 /DB_XREF=gi:4295804 /DB_XREF=UI-R-C2p-qj-e-01-0-UI.s1 /CLONE=UI-R-C2p-qj-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.43374.1 /TIER=ConsEnd /STK=1 /UG=Rn.43374 /UG_TITLE=ESTs AI454735 1382632_at AI069991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI069991 /DB_XREF=gi:3396242 /DB_XREF=UI-R-C1-lp-c-06-0-UI.s1 /CLONE=UI-R-C1-lp-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.33450.1 /TIER=ConsEnd /STK=1 /UG=Rn.33450 /UG_TITLE=ESTs AI069991 roundabout, axon guidance receptor, homolog 2 (Drosophila) Robo2 84409 NM_032106 0001554 // luteolysis // not recorded /// 0001656 // metanephros development // not recorded /// 0001656 // metanephros development // inferred from sequence or structural similarity /// 0001657 // ureteric bud development // not recorded /// 0001657 // ureteric bud development // inferred from sequence or structural similarity /// 0007156 // homophilic cell adhesion // not recorded /// 0007156 // homophilic cell adhesion // inferred from sequence or structural similarity /// 0007411 // axon guidance // inferred from direct assay /// 0007411 // axon guidance // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from sequence or structural similarity /// 0016199 // axon midline choice point recognition // inferred from expression pattern /// 0021510 // spinal cord development // inferred from expression pattern /// 0021891 // olfactory bulb interneuron development // inferred from sequence or structural similarity /// 0031290 // retinal ganglion cell axon guidance // inferred from sequence or structural similarity /// 0032870 // cellular response to hormone stimulus // not recorded /// 0048814 // regulation of dendrite morphogenesis // inferred from mutant phenotype /// 0050772 // positive regulation of axonogenesis // not recorded /// 0050772 // positive regulation of axonogenesis // inferred from sequence or structural similarity /// 0050925 // negative regulation of negative chemotaxis // not recorded 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0030673 // axolemma // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008046 // axon guidance receptor activity // inferred from direct assay /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // not recorded 1382633_at BE120748 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120748 /DB_XREF=gi:8512893 /DB_XREF=UI-R-BS1-azs-e-11-0-UI.s1 /CLONE=UI-R-BS1-azs-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.52507.1 /TIER=ConsEnd /STK=1 /UG=Rn.52507 /UG_TITLE=ESTs BE120748 1382634_at AI044343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044343 /DB_XREF=gi:3291246 /DB_XREF=UI-R-C0-is-b-07-0-UI.s1 /CLONE=UI-R-C0-is-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.15883.1 /TIER=ConsEnd /STK=1 /UG=Rn.15883 /UG_TITLE=ESTs AI044343 mediator complex subunit 14 Med14 317343 NM_001191727 /// XM_001056908 /// XM_228713 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0030518 // steroid hormone receptor signaling pathway // not recorded /// 0030521 // androgen receptor signaling pathway // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0016592 // mediator complex // inferred from electronic annotation /// 0016592 // mediator complex // not recorded 0003712 // transcription cofactor activity // not recorded /// 0003713 // transcription coactivator activity // not recorded /// 0004872 // receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation /// 0016455 // RNA polymerase II transcription mediator activity // not recorded /// 0016563 // transcription activator activity // not recorded /// 0046966 // thyroid hormone receptor binding // not recorded 1382635_at BF289119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289119 /DB_XREF=gi:11220189 /DB_XREF=EST453710 /CLONE=RGIHB31 /FEA=EST /CNT=3 /TID=Rn.56075.1 /TIER=ConsEnd /STK=1 /UG=Rn.56075 /UG_TITLE=ESTs, Weakly similar to serinethreonine kinase (Caenorhabditis elegans) (C.elegans) BF289119 SCY1-like 1 (S. cerevisiae) Scyl1 293684 NM_001011938 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // not recorded /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // inferred from sequence or structural similarity /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0005793 // ER-Golgi intermediate compartment // inferred from sequence or structural similarity /// 0005793 // ER-Golgi intermediate compartment // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005801 // cis-Golgi network // not recorded /// 0005801 // cis-Golgi network // inferred from sequence or structural similarity /// 0005801 // cis-Golgi network // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030126 // COPI vesicle coat // inferred from electronic annotation /// 0030126 // COPI vesicle coat // not recorded 0004672 // protein kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1382636_at AA899383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899383 /DB_XREF=gi:4231880 /DB_XREF=UI-R-E0-cs-b-02-0-UI.s2 /CLONE=UI-R-E0-cs-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.14924.2 /TIER=ConsEnd /STK=1 /UG=Rn.14924 /UG_TITLE=ESTs AA899383 1382637_at AI137223 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137223 /DB_XREF=gi:3638000 /DB_XREF=UI-R-C2p-oj-f-10-0-UI.s1 /CLONE=UI-R-C2p-oj-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.24458.1 /TIER=ConsEnd /STK=1 /UG=Rn.24458 /UG_TITLE=ESTs, Highly similar to G02318 Ets transcription factor (H.sapiens) AI137223 E74-like factor 2 Elf2 361944 NM_001012181 /// NM_001033909 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1382638_at AI058645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058645 /DB_XREF=gi:3332422 /DB_XREF=UI-R-C1-kp-b-07-0-UI.s1 /CLONE=UI-R-C1-kp-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.37538.2 /TIER=ConsEnd /STK=1 /UG=Rn.37538 /UG_TITLE=ESTs AI058645 1382639_at BF290625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290625 /DB_XREF=gi:11221695 /DB_XREF=EST455216 /CLONE=RGIHX15 /FEA=EST /CNT=3 /TID=Rn.55951.1 /TIER=ConsEnd /STK=1 /UG=Rn.55951 /UG_TITLE=ESTs, Weakly similar to RENAL TRANSCRIPTION FACTOR KID-1 (R.norvegicus) BF290625 1382640_at AA944498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944498 /DB_XREF=gi:3104414 /DB_XREF=EST199997 /CLONE=REMAK14 /FEA=EST /CNT=3 /TID=Rn.7742.1 /TIER=ConsEnd /STK=1 /UG=Rn.7742 /UG_TITLE=ESTs AA944498 1382641_at BF288390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288390 /DB_XREF=gi:11219460 /DB_XREF=EST452981 /CLONE=RGIGT28 /FEA=EST /CNT=3 /TID=Rn.55573.1 /TIER=ConsEnd /STK=1 /UG=Rn.55573 /UG_TITLE=ESTs BF288390 1382642_at BI291753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291753 /DB_XREF=gi:14951603 /DB_XREF=UI-R-DM0-cis-l-08-0-UI.s1 /CLONE=UI-R-DM0-cis-l-08-0-UI /FEA=EST /CNT=3 /TID=Rn.37135.1 /TIER=ConsEnd /STK=1 /UG=Rn.37135 /UG_TITLE=ESTs, Highly similar to Z281_HUMAN ZINC FINGER PROTEIN 281 (ZINC FINGER DNA BINDING PROTEIN 99) (TRANSCRIPTION FACTOR ZBP-99) (GC-BOX-BINDING ZINC FINGER PROTEIN 1) (H.sapiens) BI291753 zinc finger protein 281 Zfp281 305083 NM_001012030 0010629 // negative regulation of gene expression // not recorded /// 0010629 // negative regulation of gene expression // inferred from sequence or structural similarity /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from sequence or structural similarity /// 0010843 // promoter binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1382643_at BE102993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102993 /DB_XREF=gi:8495092 /DB_XREF=UI-R-BT1-aqr-a-04-0-UI.s1 /CLONE=UI-R-BT1-aqr-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.24347.1 /TIER=ConsEnd /STK=1 /UG=Rn.24347 /UG_TITLE=ESTs BE102993 sorting nexin 16 Snx16 64088 NM_022289 0006810 // transport // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0045022 // early endosome to late endosome transport // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1382644_at AA875527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875527 /DB_XREF=gi:4231405 /DB_XREF=UI-R-E0-cv-f-07-0-UI.s1 /CLONE=UI-R-E0-cv-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.2948.2 /TIER=ConsEnd /STK=1 /UG=Rn.2948 /UG_TITLE=ESTs AA875527 1382645_at AW920335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920335 /DB_XREF=gi:8086144 /DB_XREF=EST351639 /CLONE=RGIGU20 /FEA=EST /CNT=3 /TID=Rn.17698.1 /TIER=ConsEnd /STK=1 /UG=Rn.17698 /UG_TITLE=ESTs AW920335 1382646_at AI145475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145475 /DB_XREF=gi:3667274 /DB_XREF=UI-R-BT0-qf-c-08-0-UI.s1 /CLONE=UI-R-BT0-qf-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.28492.1 /TIER=ConsEnd /STK=1 /UG=Rn.28492 /UG_TITLE=ESTs, Highly similar to PR4H MOUSE SERINETHREONINE-PROTEIN KINASE PRP4 HOMOLOG (M.musculus) AI145475 PRP4 pre-mRNA processing factor 4 homolog B (yeast) Prpf4b 291078 NM_001011923 0006397 // mRNA processing // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005694 // chromosome // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1382647_at BF290662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290662 /DB_XREF=gi:11221732 /DB_XREF=EST455253 /CLONE=RGIHX60 /FEA=EST /CNT=3 /TID=Rn.17474.1 /TIER=ConsEnd /STK=1 /UG=Rn.17474 /UG_TITLE=ESTs BF290662 1382648_at AI235566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235566 /DB_XREF=gi:3829072 /DB_XREF=EST232128 /CLONE=ROVCT54 /FEA=EST /CNT=3 /TID=Rn.65167.1 /TIER=ConsEnd /STK=1 /UG=Rn.65167 /UG_TITLE=ESTs, Moderately similar to SYEP_HUMAN MULTIFUNCTIONAL AMINOACYL-TRNA SYNTHETASE (H.sapiens) AI235566 glutamyl-prolyl-tRNA synthetase Eprs 289352 NM_001024238 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006424 // glutamyl-tRNA aminoacylation // inferred from electronic annotation /// 0006433 // prolyl-tRNA aminoacylation // inferred from electronic annotation /// 0043039 // tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004818 // glutamate-tRNA ligase activity // inferred from electronic annotation /// 0004818 // glutamate-tRNA ligase activity // not recorded /// 0004827 // proline-tRNA ligase activity // inferred from electronic annotation /// 0004827 // proline-tRNA ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016876 // ligase activity, forming aminoacyl-tRNA and related compounds // inferred from electronic annotation 1382649_at AI030649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030649 /DB_XREF=gi:3248475 /DB_XREF=UI-R-C0-jd-c-07-0-UI.s1 /CLONE=UI-R-C0-jd-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.65858.1 /TIER=ConsEnd /STK=1 /UG=Rn.65858 /UG_TITLE=ESTs, Highly similar to LA RAT LUPUS LA PROTEIN HOMOLOG (R.norvegicus) AI030649 Sjogren syndrome antigen B Ssb 81783 NM_031119 0006396 // RNA processing // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // not recorded 1382650_at AA850953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850953 /DB_XREF=gi:2938493 /DB_XREF=EST193721 /CLONE=ROVAO79 /FEA=EST /CNT=3 /TID=Rn.21440.1 /TIER=ConsEnd /STK=1 /UG=Rn.21440 /UG_TITLE=ESTs AA850953 1382651_at AA998677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998677 /DB_XREF=gi:4291510 /DB_XREF=UI-R-C0-ig-g-06-0-UI.s1 /CLONE=UI-R-C0-ig-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.13150.1 /TIER=ConsEnd /STK=1 /UG=Rn.13150 /UG_TITLE=ESTs AA998677 1382652_at BF287629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287629 /DB_XREF=gi:11218699 /DB_XREF=EST452220 /CLONE=RGIGI29 /FEA=EST /CNT=3 /TID=Rn.47680.1 /TIER=ConsEnd /STK=1 /UG=Rn.47680 /UG_TITLE=ESTs BF287629 interleukin 27 receptor, alpha Il27ra 288905 NM_001105943 0002827 // positive regulation of T-helper 1 type immune response // not recorded /// 0002829 // negative regulation of type 2 immune response // not recorded /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0048302 // regulation of isotype switching to IgG isotypes // not recorded /// 0050830 // defense response to Gram-positive bacterium // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0045509 // interleukin-27 receptor activity // not recorded 1382653_at AI136405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136405 /DB_XREF=gi:3637182 /DB_XREF=UI-R-C2p-od-f-12-0-UI.s1 /CLONE=UI-R-C2p-od-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.27121.1 /TIER=ConsEnd /STK=1 /UG=Rn.27121 /UG_TITLE=ESTs AI136405 1382654_at AA859319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859319 /DB_XREF=gi:4229668 /DB_XREF=UI-R-E0-cj-d-02-0-UI.s1 /CLONE=UI-R-E0-cj-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.16997.2 /TIER=ConsEnd /STK=1 /UG=Rn.16997 /UG_TITLE=ESTs AA859319 1382655_at AA964534 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964534 /DB_XREF=gi:4279408 /DB_XREF=UI-R-C0-gv-h-07-0-UI.s1 /CLONE=UI-R-C0-gv-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.11834.1 /TIER=ConsEnd /STK=1 /UG=Rn.11834 /UG_TITLE=ESTs AA964534 1382656_at AW521183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521183 /DB_XREF=gi:7163561 /DB_XREF=UI-R-BO0-agk-c-05-0-UI.s1 /CLONE=UI-R-BO0-agk-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.45126.1 /TIER=ConsEnd /STK=1 /UG=Rn.45126 /UG_TITLE=ESTs, Weakly similar to A56559 enhancer-trap-locus-1 protein - mouse (M.musculus) AW521183 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1382657_at AA946142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946142 /DB_XREF=gi:3106058 /DB_XREF=EST201641 /CLONE=RLUBB66 /FEA=EST /CNT=3 /TID=Rn.7994.1 /TIER=ConsEnd /STK=1 /UG=Rn.7994 /UG_TITLE=ESTs, Moderately similar to BONE MORPHOGENETIC PROTEIN 6 PRECURSOR (R.norvegicus) AA946142 bone morphogenetic protein 5 Bmp5 315824 NM_001108168 0001501 // skeletal system development // not recorded /// 0007389 // pattern specification process // not recorded /// 0030539 // male genitalia development // not recorded /// 0040007 // growth // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0031988 // membrane-bounded vesicle // inferred from direct assay 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0070700 // BMP receptor binding // not recorded 1382658_at AI070638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070638 /DB_XREF=gi:3396889 /DB_XREF=UI-R-C2-mv-f-12-0-UI.s1 /CLONE=UI-R-C2-mv-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.21335.1 /TIER=ConsEnd /STK=1 /UG=Rn.21335 /UG_TITLE=ESTs AI070638 myeloid/lymphoid or mixed-lineage leukemia 3-like LOC100364718 100364718 XM_002726310 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1382659_at BF289229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289229 /DB_XREF=gi:11220299 /DB_XREF=EST453820 /CLONE=RGIHC53 /FEA=EST /CNT=3 /TID=Rn.55737.1 /TIER=ConsEnd /STK=1 /UG=Rn.55737 /UG_TITLE=ESTs BF289229 phospholipase A2 receptor 1 Pla2r1 295631 NM_001100837 /// XM_001069062 /// XM_215737 0005488 // binding // inferred from electronic annotation 1382660_at AA923866 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA923866 /DB_XREF=gi:4233958 /DB_XREF=UI-R-A1-dr-h-03-0-UI.s1 /CLONE=UI-R-A1-dr-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.8284.1 /TIER=ConsEnd /STK=1 /UG=Rn.8284 /UG_TITLE=ESTs AA923866 Similar to FLJ20298 protein isoform a RGD1563084 315912 XR_007329 /// XR_086378 0005509 // calcium ion binding // inferred from electronic annotation 1382661_at AI230642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230642 /DB_XREF=gi:3814529 /DB_XREF=EST227337 /CLONE=REMCZ38 /FEA=EST /CNT=3 /TID=Rn.21145.1 /TIER=ConsEnd /STK=1 /UG=Rn.21145 /UG_TITLE=ESTs AI230642 nucleoporin 160 Nup160 311182 NM_001107744 0006406 // mRNA export from nucleus // not recorded 0000776 // kinetochore // not recorded /// 0005635 // nuclear envelope // not recorded /// 0005643 // nuclear pore // not recorded /// 0031080 // Nup107-160 complex // not recorded 0005487 // nucleocytoplasmic transporter activity // not recorded /// 0005515 // protein binding // not recorded 1382662_at AI172524 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172524 /DB_XREF=gi:3712564 /DB_XREF=UI-R-C2p-nu-f-01-0-UI.s1 /CLONE=UI-R-C2p-nu-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.23708.1 /TIER=ConsEnd /STK=1 /UG=Rn.23708 /UG_TITLE=ESTs AI172524 1382663_at AA819819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819819 /DB_XREF=gi:4228074 /DB_XREF=UI-R-A0-aq-h-09-0-UI.s1 /CLONE=UI-R-A0-aq-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.16670.1 /TIER=ConsEnd /STK=1 /UG=Rn.16670 /UG_TITLE=ESTs, Weakly similar to A39382 liver regeneration factor LRF1 - rat (R.norvegicus) AA819819 basic leucine zipper transcription factor, ATF-like Batf 299206 NM_001106748 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1382664_at AW525662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525662 /DB_XREF=gi:7168047 /DB_XREF=UI-R-BJ0p-aiu-d-02-0-UI.s1 /CLONE=UI-R-BJ0p-aiu-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.16258.1 /TIER=ConsEnd /STK=1 /UG=Rn.16258 /UG_TITLE=ESTs, Highly similar to CC27_HUMAN PROTEIN CDC27HS (CELL DIVISION CYCLE PROTEIN 27 HOMOLOG) (H-NUC) (H.sapiens) AW525662 cell division cycle 27 homolog (S. cerevisiae) Cdc27 360643 NM_001024793 0007091 // mitotic metaphase/anaphase transition // not recorded /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070979 // protein K11-linked ubiquitination // not recorded /// 0070979 // protein K11-linked ubiquitination // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005680 // anaphase-promoting complex // not recorded /// 0005680 // anaphase-promoting complex // inferred from sequence or structural similarity /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // not recorded /// 0005829 // cytosol // not recorded /// 0005876 // spindle microtubule // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382665_at AI011619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011619 /DB_XREF=gi:3225451 /DB_XREF=EST206070 /CLONE=ROVAX40 /FEA=EST /CNT=3 /TID=Rn.17748.1 /TIER=ConsEnd /STK=1 /UG=Rn.17748 /UG_TITLE=ESTs AI011619 1382666_at AI011667 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011667 /DB_XREF=gi:3225499 /DB_XREF=EST206118 /CLONE=ROVAX93 /FEA=EST /CNT=3 /TID=Rn.17755.1 /TIER=ConsEnd /STK=1 /UG=Rn.17755 /UG_TITLE=ESTs AI011667 1382667_at AA866425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866425 /DB_XREF=gi:4230645 /DB_XREF=UI-R-E0-ch-d-04-0-UI.s1 /CLONE=UI-R-E0-ch-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.3100.1 /TIER=ConsEnd /STK=1 /UG=Rn.3100 /UG_TITLE=ESTs, Moderately similar to I54353 tetracycline transporter-like protein (H.sapiens) AA866425 major facilitator superfamily domain containing 10 Mfsd10 305449 NM_001191680 /// XM_001064647 /// XM_223533 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1382668_at AI232529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232529 /DB_XREF=gi:3816409 /DB_XREF=EST229217 /CLONE=RKICC84 /FEA=EST /CNT=3 /TID=Rn.15368.1 /TIER=ConsEnd /STK=1 /UG=Rn.15368 /UG_TITLE=ESTs AI232529 COMM domain containing 2 Commd2 688478 NM_001109503 0005515 // protein binding // not recorded 1382669_at AI045311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045311 /DB_XREF=gi:3292130 /DB_XREF=UI-R-C1-kh-a-06-0-UI.s1 /CLONE=UI-R-C1-kh-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.16177.1 /TIER=ConsEnd /STK=1 /UG=Rn.16177 /UG_TITLE=ESTs, Weakly similar to BGAL MOUSE BETA-GALACTOSIDASE PRECURSOR (M.musculus) AI045311 beta-galactosidase-like protein Bin2a 494244 NM_001009524 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004565 // beta-galactosidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation 1382670_at BF394189 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394189 /DB_XREF=gi:11379053 /DB_XREF=UI-R-CA0-bhb-c-06-0-UI.s1 /CLONE=UI-R-CA0-bhb-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.24954.2 /TIER=ConsEnd /STK=1 /UG=Rn.24954 /UG_TITLE=ESTs, Highly similar to T42646 hypothetical protein DKFZp727K171.1 (H.sapiens) BF394189 La ribonucleoprotein domain family, member 1 Larp1 303158 XM_001075150 /// XM_220446 0005515 // protein binding // not recorded 1382671_at AW920165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920165 /DB_XREF=gi:8085880 /DB_XREF=EST351378 /CLONE=RGIGQ49 /FEA=EST /CNT=3 /TID=Rn.25451.1 /TIER=ConsEnd /STK=1 /UG=Rn.25451 /UG_TITLE=ESTs AW920165 1382672_a_at AW918207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918207 /DB_XREF=gi:8083978 /DB_XREF=EST349511 /CLONE=RGIEN82 /FEA=EST /CNT=3 /TID=Rn.17597.1 /TIER=ConsEnd /STK=1 /UG=Rn.17597 /UG_TITLE=ESTs, Highly similar to TYROSINE-PROTEIN KINASE FLK (R.norvegicus) AW918207 fer (fms/fps related) protein kinase, testis specific 2 Fert2 301737 NM_001106928 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006935 // chemotaxis // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from physical interaction /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0045295 // gamma-catenin binding // inferred from physical interaction /// 0045296 // cadherin binding // inferred from physical interaction /// 0050839 // cell adhesion molecule binding // inferred from physical interaction 1382673_at BE115812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115812 /DB_XREF=gi:8507917 /DB_XREF=UI-R-BS1-axv-b-06-0-UI.s1 /CLONE=UI-R-BS1-axv-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.16763.1 /TIER=ConsEnd /STK=1 /UG=Rn.16763 /UG_TITLE=ESTs BE115812 1382674_a_at AA818193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818193 /DB_XREF=gi:4198706 /DB_XREF=UI-R-A0-ai-g-05-0-UI.s1 /CLONE=UI-R-A0-ai-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.23958.1 /TIER=ConsEnd /STK=1 /UG=Rn.23958 /UG_TITLE=ESTs AA818193 1382675_at AA818193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818193 /DB_XREF=gi:4198706 /DB_XREF=UI-R-A0-ai-g-05-0-UI.s1 /CLONE=UI-R-A0-ai-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.23958.1 /TIER=ConsEnd /STK=1 /UG=Rn.23958 /UG_TITLE=ESTs AA818193 1382676_at AI013980 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013980 /DB_XREF=gi:3226916 /DB_XREF=EST207535 /CLONE=RSPBC58 /FEA=EST /CNT=3 /TID=Rn.17925.1 /TIER=ConsEnd /STK=1 /UG=Rn.17925 /UG_TITLE=ESTs AI013980 WD repeat domain 20a Wdr20a 314453 NM_001100894 1382677_at AA899419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899419 /DB_XREF=gi:4231917 /DB_XREF=UI-R-E0-cu-a-05-0-UI.s2 /CLONE=UI-R-E0-cu-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.23852.1 /TIER=ConsEnd /STK=1 /UG=Rn.23852 /UG_TITLE=ESTs AA899419 1382678_at AA859019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859019 /DB_XREF=gi:4229287 /DB_XREF=UI-R-A0-ak-a-08-0-UI.s2 /CLONE=UI-R-A0-ak-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.40176.1 /TIER=ConsEnd /STK=1 /UG=Rn.40176 /UG_TITLE=ESTs, Weakly similar to G35070 apolipoprotein H-related protein 13G1 - mouse (M.musculus) AA859019 complement component factor h-like 1 Cfhl1 289057 NM_001044227 1382679_at BF396190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396190 /DB_XREF=gi:11381202 /DB_XREF=UI-R-BS2-bdv-g-07-0-UI.s1 /CLONE=UI-R-BS2-bdv-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.55619.1 /TIER=ConsEnd /STK=1 /UG=Rn.55619 /UG_TITLE=ESTs, Weakly similar to T46637 transcription factor 1, neural - rat (R.norvegicus) BF396190 WD repeat domain 43 Wdr43 362703 NM_001037791 1382680_at BG673602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG673602 /DB_XREF=gi:13895701 /DB_XREF=DRNAAE12 /CLONE=DRNAAE12 /FEA=EST /CNT=3 /TID=Rn.3182.3 /TIER=ConsEnd /STK=1 /UG=Rn.3182 /UG_TITLE=ESTs, Moderately similar to ADFP MOUSE ADIPOPHILIN (M.musculus) BG673602 Adipose differentiation related protein Adfp 298199 NM_001007144 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0015909 // long-chain fatty acid transport // inferred from electronic annotation /// 0015909 // long-chain fatty acid transport // not recorded /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0019915 // lipid storage // not recorded /// 0019915 // lipid storage // traceable author statement /// 0019915 // lipid storage // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005811 // lipid particle // inferred from direct assay /// 0005811 // lipid particle // not recorded /// 0005811 // lipid particle // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1382681_at AA899948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899948 /DB_XREF=gi:4232440 /DB_XREF=UI-R-E0-cr-c-07-0-UI.s2 /CLONE=UI-R-E0-cr-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.13590.1 /TIER=ConsEnd /STK=1 /UG=Rn.13590 /UG_TITLE=ESTs AA899948 1382682_at AI172217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172217 /DB_XREF=gi:4134724 /DB_XREF=EST218215 /CLONE=RMUBW38 /FEA=EST /CNT=3 /TID=Rn.22650.1 /TIER=ConsEnd /STK=1 /UG=Rn.22650 /UG_TITLE=ESTs AI172217 1382683_a_at AA891943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891943 /DB_XREF=gi:3018822 /DB_XREF=EST195746 /CLONE=RKIAI86 /FEA=EST /CNT=1 /TID=Rn.3564.2 /TIER=ConsEnd /STK=1 /UG=Rn.3564 /UG_TITLE=ESTs AA891943 1382684_at BI293639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293639 /DB_XREF=gi:14955326 /DB_XREF=UI-R-DK0-cdu-a-01-0-UI.s1 /CLONE=UI-R-DK0-cdu-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.72945.1 /TIER=ConsEnd /STK=1 /UG=Rn.72945 /UG_TITLE=ESTs BI293639 1382685_at AI101660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101660 /DB_XREF=gi:4134028 /DB_XREF=EST210949 /CLONE=RBRBT49 /FEA=EST /CNT=3 /TID=Rn.36641.1 /TIER=ConsEnd /STK=1 /UG=Rn.36641 /UG_TITLE=ESTs AI101660 slit homolog 2 (Drosophila) Slit2 360272 NM_022632 0001554 // luteolysis // not recorded /// 0001656 // metanephros development // not recorded /// 0001657 // ureteric bud development // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0001933 // negative regulation of protein phosphorylation // not recorded /// 0002042 // cell migration involved in sprouting angiogenesis // not recorded /// 0002689 // negative regulation of leukocyte chemotaxis // not recorded /// 0006935 // chemotaxis // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007411 // axon guidance // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0008045 // motor axon guidance // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010593 // negative regulation of lamellipodium assembly // not recorded /// 0010596 // negative regulation of endothelial cell migration // not recorded /// 0010629 // negative regulation of gene expression // not recorded /// 0014912 // negative regulation of smooth muscle cell migration // not recorded /// 0016337 // cell-cell adhesion // not recorded /// 0021510 // spinal cord development // inferred from expression pattern /// 0021772 // olfactory bulb development // not recorded /// 0021834 // chemorepulsion involved in embryonic olfactory bulb interneuron migration // not recorded /// 0021836 // chemorepulsion involved in postnatal olfactory bulb interneuron migration // not recorded /// 0021972 // corticospinal neuron axon guidance through spinal cord // not recorded /// 0022029 // telencephalon cell migration // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0030336 // negative regulation of cell migration // not recorded /// 0030837 // negative regulation of actin filament polymerization // not recorded /// 0031290 // retinal ganglion cell axon guidance // not recorded /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // not recorded /// 0033563 // dorsal/ventral axon guidance // not recorded /// 0035385 // Roundabout signaling pathway // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043116 // negative regulation of vascular permeability // not recorded /// 0048754 // branching morphogenesis of a tube // not recorded /// 0048812 // neuron projection morphogenesis // not recorded /// 0048846 // axon extension involved in axon guidance // not recorded /// 0050728 // negative regulation of inflammatory response // inferred from mutant phenotype /// 0050919 // negative chemotaxis // not recorded /// 0050929 // induction of negative chemotaxis // not recorded /// 0051058 // negative regulation of small GTPase mediated signal transduction // not recorded /// 0051414 // response to cortisol stimulus // not recorded /// 0060603 // mammary gland duct morphogenesis // not recorded /// 0060763 // mammary duct terminal end bud growth // not recorded /// 0070100 // negative regulation of chemokine-mediated signaling pathway // not recorded /// 0071504 // cellular response to heparin // not recorded /// 0071672 // negative regulation of smooth muscle cell chemotaxis // not recorded /// 0071676 // negative regulation of mononuclear cell migration // not recorded /// 0090024 // negative regulation of neutrophil chemotaxis // not recorded /// 0090260 // negative regulation of retinal ganglion cell axon guidance // not recorded /// 0090288 // negative regulation of cellular response to growth factor stimulus // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0004963 // follicle-stimulating hormone receptor activity // inferred from electronic annotation /// 0005095 // GTPase inhibitor activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008201 // heparin binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043237 // laminin-1 binding // not recorded /// 0043394 // proteoglycan binding // not recorded /// 0043395 // heparan sulfate proteoglycan binding // inferred from direct assay /// 0045499 // chemorepellent activity // not recorded /// 0048495 // Roundabout binding // not recorded 1382686_at BF285846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285846 /DB_XREF=gi:11216916 /DB_XREF=EST450437 /CLONE=RGIFK62 /FEA=EST /CNT=3 /TID=Rn.7659.1 /TIER=ConsEnd /STK=1 /UG=Rn.7659 /UG_TITLE=ESTs BF285846 1382687_at BE096569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096569 /DB_XREF=gi:8487500 /DB_XREF=UI-R-BU0-aph-f-11-0-UI.s1 /CLONE=UI-R-BU0-aph-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.21301.1 /TIER=ConsEnd /STK=1 /UG=Rn.21301 /UG_TITLE=ESTs BE096569 SIX homeobox 6 Six6 314221 NM_001108032 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1382688_at AI229706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229706 /DB_XREF=gi:4135463 /DB_XREF=EST226401 /CLONE=REMCK82 /FEA=EST /CNT=3 /TID=Rn.18468.1 /TIER=ConsEnd /STK=1 /UG=Rn.18468 /UG_TITLE=ESTs AI229706 solute carrier family 25, member 37 Slc25a37 306000 NM_001013996 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006826 // iron ion transport // inferred from electronic annotation /// 0034755 // iron ion transmembrane transport // not recorded /// 0048250 // mitochondrial iron ion transport // inferred from electronic annotation /// 0048250 // mitochondrial iron ion transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005381 // iron ion transmembrane transporter activity // inferred from electronic annotation /// 0005381 // iron ion transmembrane transporter activity // not recorded /// 0005488 // binding // inferred from electronic annotation 1382689_at BI276519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276519 /DB_XREF=gi:14921501 /DB_XREF=UI-R-CX0-bwv-c-08-0-UI.s1 /CLONE=UI-R-CX0-bwv-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.51775.1 /TIER=ConsEnd /STK=1 /UG=Rn.51775 /UG_TITLE=ESTs BI276519 transmembrane protein 41B Tmem41b 361626 NM_001012358 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1382690_at AI070180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070180 /DB_XREF=gi:3396431 /DB_XREF=UI-R-C1-lp-e-12-0-UI.s1 /CLONE=UI-R-C1-lp-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.21265.1 /TIER=ConsEnd /STK=1 /UG=Rn.21265 /UG_TITLE=ESTs, Weakly similar to A35364 carcinoembryonic antigen-related protein (R.norvegicus) AI070180 carcinoembryonic antigen gene family 4 Cgm4 24257 NM_012525 0007565 // female pregnancy // inferred from expression pattern 1382691_at AI234943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234943 /DB_XREF=gi:3828449 /DB_XREF=EST231505 /CLONE=ROVCJ88 /FEA=EST /CNT=3 /TID=Rn.55987.1 /TIER=ConsEnd /STK=1 /UG=Rn.55987 /UG_TITLE=ESTs AI234943 Splicing factor 3b, subunit 1 Sf3b1 84486 NM_053426 0008380 // RNA splicing // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382692_at AI045955 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045955 /DB_XREF=gi:3290867 /DB_XREF=UI-R-C1-jt-g-01-0-UI.s1 /CLONE=UI-R-C1-jt-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.15743.1 /TIER=ConsEnd /STK=1 /UG=Rn.15743 /UG_TITLE=ESTs AI045955 C-type lectin domain family 7, member a Clec7a 502902 NM_001173386 /// XM_001067977 /// XM_578404 0001878 // response to yeast // not recorded /// 0001878 // response to yeast // inferred from electronic annotation /// 0001879 // detection of yeast // not recorded /// 0001879 // detection of yeast // inferred from electronic annotation /// 0002238 // response to molecule of fungal origin // not recorded /// 0002238 // response to molecule of fungal origin // inferred from electronic annotation /// 0002752 // cell surface pattern recognition receptor signaling pathway // not recorded /// 0002752 // cell surface pattern recognition receptor signaling pathway // inferred from electronic annotation /// 0006910 // phagocytosis, recognition // not recorded /// 0006910 // phagocytosis, recognition // inferred from electronic annotation /// 0006911 // phagocytosis, engulfment // not recorded /// 0006911 // phagocytosis, engulfment // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0008037 // cell recognition // not recorded /// 0008037 // cell recognition // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0032760 // positive regulation of tumor necrosis factor production // not recorded /// 0032760 // positive regulation of tumor necrosis factor production // inferred from electronic annotation /// 0050766 // positive regulation of phagocytosis // not recorded /// 0050766 // positive regulation of phagocytosis // inferred from electronic annotation 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation 0001846 // opsonin binding // not recorded /// 0001846 // opsonin binding // inferred from electronic annotation /// 0001872 // zymosan binding // not recorded /// 0001872 // zymosan binding // inferred from electronic annotation /// 0001874 // zymosan receptor activity // not recorded /// 0001874 // zymosan receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0005529 // sugar binding // not recorded /// 0008329 // pattern recognition receptor activity // not recorded /// 0008329 // pattern recognition receptor activity // inferred from electronic annotation /// 0030247 // polysaccharide binding // not recorded /// 0030247 // polysaccharide binding // inferred from electronic annotation 1382693_a_at BF289375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289375 /DB_XREF=gi:11220445 /DB_XREF=EST453966 /CLONE=RGIHE67 /FEA=EST /CNT=2 /TID=Rn.25372.2 /TIER=ConsEnd /STK=1 /UG=Rn.25372 /UG_TITLE=ESTs BF289375 1382694_at AA957089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957089 /DB_XREF=gi:4239562 /DB_XREF=UI-R-E1-fs-b-03-0-UI.s1 /CLONE=UI-R-E1-fs-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.25372.1 /TIER=ConsEnd /STK=1 /UG=Rn.25372 /UG_TITLE=ESTs AA957089 1382695_at BF523738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523738 /DB_XREF=gi:11631705 /DB_XREF=UI-R-Y0-vb-h-08-0-UI.r1 /CLONE=UI-R-Y0-vb-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.28443.1 /TIER=ConsEnd /STK=1 /UG=Rn.28443 /UG_TITLE=ESTs BF523738 LRRN4 C-terminal like Lrrn4cl 690329 NM_001109579 1382696_at AI229090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229090 /DB_XREF=gi:3812977 /DB_XREF=EST225785 /CLONE=RBRDD85 /FEA=EST /CNT=3 /TID=Rn.24399.1 /TIER=ConsEnd /STK=1 /UG=Rn.24399 /UG_TITLE=ESTs AI229090 Down syndrome cell adhesion molecule-like LOC100360483 100360483 XM_002727878 1382697_at BF289134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289134 /DB_XREF=gi:11220204 /DB_XREF=EST453725 /CLONE=RGIHB47 /FEA=EST /CNT=3 /TID=Rn.25293.1 /TIER=ConsEnd /STK=1 /UG=Rn.25293 /UG_TITLE=ESTs BF289134 1382698_at AI030699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030699 /DB_XREF=gi:3248525 /DB_XREF=UI-R-C0-jo-d-12-0-UI.s1 /CLONE=UI-R-C0-jo-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.21620.1 /TIER=ConsEnd /STK=1 /UG=Rn.21620 /UG_TITLE=ESTs AI030699 single-minded homolog 1 (Drosophila) Sim1 309888 NM_001107641 0001657 // ureteric bud development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1382699_s_at AW920326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920326 /DB_XREF=gi:8086135 /DB_XREF=EST351630 /CLONE=RGIGU11 /FEA=EST /CNT=3 /TID=Rn.49280.1 /TIER=ConsEnd /STK=1 /UG=Rn.49280 /UG_TITLE=ESTs AW920326 Hermansky-Pudlak syndrome 1 homolog (human) Hps1 114638 NM_040669 0006996 // organelle organization // not recorded /// 0007596 // blood coagulation // not recorded /// 0030318 // melanocyte differentiation // not recorded /// 0032816 // positive regulation of natural killer cell activation // not recorded /// 0033299 // secretion of lysosomal enzymes // not recorded /// 0043473 // pigmentation // not recorded 0016023 // cytoplasmic membrane-bounded vesicle // not recorded 0005515 // protein binding // not recorded /// 0046983 // protein dimerization activity // not recorded 1382700_at AI237227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237227 /DB_XREF=gi:3830733 /DB_XREF=EST233789 /CLONE=RPLCV16 /FEA=EST /CNT=3 /TID=Rn.25420.1 /TIER=ConsEnd /STK=1 /UG=Rn.25420 /UG_TITLE=ESTs AI237227 1382701_at AA893803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893803 /DB_XREF=gi:3020682 /DB_XREF=EST197606 /CLONE=RPLAK77 /FEA=EST /CNT=3 /TID=Rn.55457.1 /TIER=ConsEnd /STK=1 /UG=Rn.55457 /UG_TITLE=ESTs AA893803 1382702_at AA998276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998276 /DB_XREF=gi:4288740 /DB_XREF=UI-R-C0-hz-b-08-0-UI.s1 /CLONE=UI-R-C0-hz-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.13303.1 /TIER=ConsEnd /STK=1 /UG=Rn.13303 /UG_TITLE=ESTs AA998276 1382703_at BE099893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099893 /DB_XREF=gi:8491776 /DB_XREF=UI-R-BJ1-atl-d-05-0-UI.s1 /CLONE=UI-R-BJ1-atl-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.21696.1 /TIER=ConsEnd /STK=1 /UG=Rn.21696 /UG_TITLE=ESTs BE099893 1382704_at AA964555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964555 /DB_XREF=gi:4279429 /DB_XREF=UI-R-E1-go-b-06-0-UI.s1 /CLONE=UI-R-E1-go-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.11841.1 /TIER=ConsEnd /STK=1 /UG=Rn.11841 /UG_TITLE=ESTs AA964555 1382705_at BE116909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116909 /DB_XREF=gi:8509054 /DB_XREF=UI-R-BS1-ayl-b-02-0-UI.s1 /CLONE=UI-R-BS1-ayl-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.21635.2 /TIER=ConsEnd /STK=1 /UG=Rn.21635 /UG_TITLE=ESTs BE116909 1382706_at AI501895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501895 /DB_XREF=gi:4399746 /DB_XREF=UI-R-C2p-sd-f-11-0-UI.s1 /CLONE=UI-R-C2p-sd-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.35579.1 /TIER=ConsEnd /STK=1 /UG=Rn.35579 /UG_TITLE=ESTs AI501895 1382707_at BM386762 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386762 /DB_XREF=gi:18186815 /DB_XREF=UI-R-CN1-cjg-n-10-0-UI.s1 /CLONE=UI-R-CN1-cjg-n-10-0-UI /FEA=EST /CNT=3 /TID=Rn.38550.1 /TIER=ConsEnd /STK=1 /UG=Rn.38550 /UG_TITLE=ESTs BM386762 ribosomal protein S6 kinase polypeptide 3 Rps6ka3 501560 NM_001192004 /// XM_001054840 /// XM_576965 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded 1382708_at AI045073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045073 /DB_XREF=gi:3291892 /DB_XREF=UI-R-C1-kf-c-12-0-UI.s1 /CLONE=UI-R-C1-kf-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.20838.1 /TIER=ConsEnd /STK=1 /UG=Rn.20838 /UG_TITLE=ESTs AI045073 1382709_at AI178618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178618 /DB_XREF=gi:3729256 /DB_XREF=EST222297 /CLONE=RPLCT46 /FEA=EST /CNT=3 /TID=Rn.34003.1 /TIER=ConsEnd /STK=1 /UG=Rn.34003 /UG_TITLE=ESTs AI178618 1382710_at AA997271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997271 /DB_XREF=gi:4282857 /DB_XREF=UI-R-C0-hy-g-01-0-UI.s1 /CLONE=UI-R-C0-hy-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.23278.1 /TIER=ConsEnd /STK=1 /UG=Rn.23278 /UG_TITLE=ESTs AA997271 Ectodermal-neural cortex 1 Enc1 294674 NM_001003401 0005515 // protein binding // inferred from electronic annotation 1382711_at AI030337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030337 /DB_XREF=gi:3248163 /DB_XREF=UI-R-C0-iu-d-04-0-UI.s1 /CLONE=UI-R-C0-iu-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.21578.1 /TIER=ConsEnd /STK=1 /UG=Rn.21578 /UG_TITLE=ESTs AI030337 zinc finger with KRAB and SCAN domains 1 Zkscan1 498160 NM_001025760 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382712_at AI044245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044245 /DB_XREF=gi:3291148 /DB_XREF=UI-R-C1-kb-g-09-0-UI.s2 /CLONE=UI-R-C1-kb-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.20741.1 /TIER=ConsEnd /STK=1 /UG=Rn.20741 /UG_TITLE=ESTs AI044245 1382713_at AI235654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235654 /DB_XREF=gi:3829160 /DB_XREF=EST232216 /CLONE=ROVCU64 /FEA=EST /CNT=3 /TID=Rn.55763.1 /TIER=ConsEnd /STK=1 /UG=Rn.55763 /UG_TITLE=ESTs, Weakly similar to T13953 MEGF5 protein - rat (R.norvegicus) AI235654 leucine-rich repeats and immunoglobulin-like domains 3 Lrig3 299830 XM_001055013 /// XM_216905 0005515 // protein binding // inferred from electronic annotation 1382714_at AA875186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875186 /DB_XREF=gi:4231066 /DB_XREF=UI-R-E0-ce-h-05-0-UI.s1 /CLONE=UI-R-E0-ce-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.3753.1 /TIER=ConsEnd /STK=1 /UG=Rn.3753 /UG_TITLE=ESTs AA875186 kazrin LOC313672 313672 NM_001014070 0031424 // keratinization // inferred from electronic annotation 0001533 // cornified envelope // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030057 // desmosome // inferred from electronic annotation 1382715_at AA818382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818382 /DB_XREF=gi:4228182 /DB_XREF=UI-R-A0-at-g-01-0-UI.s1 /CLONE=UI-R-A0-at-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.16699.1 /TIER=ConsEnd /STK=1 /UG=Rn.16699 /UG_TITLE=ESTs AA818382 1382716_at AI235527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235527 /DB_XREF=gi:3829033 /DB_XREF=EST232089 /CLONE=ROVCT10 /FEA=EST /CNT=3 /TID=Rn.25332.1 /TIER=ConsEnd /STK=1 /UG=Rn.25332 /UG_TITLE=ESTs AI235527 1382717_at BF386949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386949 /DB_XREF=gi:11371773 /DB_XREF=UI-R-CA1-bbj-e-03-0-UI.s1 /CLONE=UI-R-CA1-bbj-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.49012.1 /TIER=ConsEnd /STK=1 /UG=Rn.49012 /UG_TITLE=ESTs BF386949 family with sequence similarity 168, member A Fam168a 361614 NM_001108494 1382718_at AA900547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900547 /DB_XREF=gi:4233039 /DB_XREF=UI-R-E0-ch-d-09-0-UI.s3 /CLONE=UI-R-E0-ch-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.15078.2 /TIER=ConsEnd /STK=1 /UG=Rn.15078 /UG_TITLE=ESTs AA900547 Nuclear transcription factor, X-box binding 1 Nfx1 313166 NM_001024784 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045347 // negative regulation of MHC class II biosynthetic process // not recorded 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382719_at AA943841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943841 /DB_XREF=gi:3103757 /DB_XREF=EST199340 /CLONE=RBRAQ35 /FEA=EST /CNT=3 /TID=Rn.33370.1 /TIER=ConsEnd /STK=1 /UG=Rn.33370 /UG_TITLE=ESTs AA943841 1382720_at AW526559 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526559 /DB_XREF=gi:7168973 /DB_XREF=UI-R-BO1-ajc-d-12-0-UI.s1 /CLONE=UI-R-BO1-ajc-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.44859.1 /TIER=ConsEnd /STK=1 /UG=Rn.44859 /UG_TITLE=ESTs AW526559 1382721_at BI280928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280928 /DB_XREF=gi:14930180 /DB_XREF=UI-R-DC0-bzo-a-08-0-UI.s1 /CLONE=UI-R-DC0-bzo-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.48595.1 /TIER=ConsEnd /STK=1 /UG=Rn.48595 /UG_TITLE=ESTs BI280928 gametogenetin binding protein 2 Ggnbp2 360584 NM_001004273 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // not recorded 1382722_at AI234675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234675 /DB_XREF=gi:3828181 /DB_XREF=EST231237 /CLONE=ROVCG25 /FEA=EST /CNT=3 /TID=Rn.55692.1 /TIER=ConsEnd /STK=1 /UG=Rn.55692 /UG_TITLE=ESTs, Weakly similar to T13954 MEGF6 protein - rat (R.norvegicus) AI234675 scavenger receptor class F, member 1 Scarf1 303313 NM_001107022 0016358 // dendrite development // not recorded 0016021 // integral to membrane // not recorded 0005044 // scavenger receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0030169 // low-density lipoprotein binding // not recorded 1382723_at AI071739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071739 /DB_XREF=gi:3397954 /DB_XREF=UI-R-C2-nj-a-12-0-UI.s1 /CLONE=UI-R-C2-nj-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.21984.1 /TIER=ConsEnd /STK=1 /UG=Rn.21984 /UG_TITLE=ESTs AI071739 potassium channel, subfamily K, member 2 Kcnk2 170899 NM_172041 /// NM_172042 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0034765 // regulation of ion transmembrane transport // not recorded 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // not recorded /// 0005267 // potassium channel activity // inferred from electronic annotation 1382724_at AW433604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433604 /DB_XREF=gi:6964911 /DB_XREF=UI-R-BJ0p-afa-e-09-0-UI.s1 /CLONE=UI-R-BJ0p-afa-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.64149.1 /TIER=ConsEnd /STK=1 /UG=Rn.64149 /UG_TITLE=ESTs, Moderately similar to T02245 hypothetical protein P1.11659_3 (H.sapiens) AW433604 phosphatidylinositol glycan anchor biosynthesis, class O Pigo 313341 XM_001069442 /// XM_233141 0006506 // GPI anchor biosynthetic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0016254 // preassembly of GPI anchor in ER membrane // not recorded 0005789 // endoplasmic reticulum membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382725_at AA818645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818645 /DB_XREF=gi:4200456 /DB_XREF=UI-R-A0-az-f-06-0-UI.s1 /CLONE=UI-R-A0-az-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.33834.1 /TIER=ConsEnd /STK=1 /UG=Rn.33834 /UG_TITLE=ESTs AA818645 COP9 constitutive photomorphogenic homolog subunit 7B (Arabidopsis) Cops7b 363273 NM_001108807 1382726_at BF386091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386091 /DB_XREF=gi:11370915 /DB_XREF=UI-R-CA0-bad-h-02-0-UI.s1 /CLONE=UI-R-CA0-bad-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.60555.1 /TIER=ConsEnd /STK=1 /UG=Rn.60555 /UG_TITLE=ESTs BF386091 naked cuticle homolog 1 (Drosophila) Nkd1 364952 NM_001108894 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382727_at AI071140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071140 /DB_XREF=gi:3397355 /DB_XREF=UI-R-C2-mt-e-09-0-UI.s1 /CLONE=UI-R-C2-mt-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.20024.1 /TIER=ConsEnd /STK=1 /UG=Rn.20024 /UG_TITLE=ESTs AI071140 rCG47764-like LOC100362342 100362342 XM_002728861 1382728_at AA924018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924018 /DB_XREF=gi:4234110 /DB_XREF=UI-R-A1-dt-e-10-0-UI.s1 /CLONE=UI-R-A1-dt-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.25164.1 /TIER=ConsEnd /STK=1 /UG=Rn.25164 /UG_TITLE=ESTs AA924018 1382729_at BE098382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098382 /DB_XREF=gi:8490246 /DB_XREF=UI-R-BJ1-auc-a-05-0-UI.s1 /CLONE=UI-R-BJ1-auc-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.7446.1 /TIER=ConsEnd /STK=1 /UG=Rn.7446 /UG_TITLE=ESTs BE098382 similar to GTPase activating RANGAP domain-like 3 RGD1564019 499783 XM_001078585 /// XM_002729156 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation 1382730_at AI233825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233825 /DB_XREF=gi:3817705 /DB_XREF=EST230513 /CLONE=RLUCR65 /FEA=EST /CNT=3 /TID=Rn.24759.1 /TIER=ConsEnd /STK=1 /UG=Rn.24759 /UG_TITLE=ESTs AI233825 1382731_at AA818685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818685 /DB_XREF=gi:4225837 /DB_XREF=UI-R-A0-az-b-03-0-UI.s1 /CLONE=UI-R-A0-az-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.24289.1 /TIER=ConsEnd /STK=1 /UG=Rn.24289 /UG_TITLE=ESTs AA818685 1382732_at BE116084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116084 /DB_XREF=gi:8508189 /DB_XREF=UI-R-BS1-axz-c-05-0-UI.s1 /CLONE=UI-R-BS1-axz-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.52617.1 /TIER=ConsEnd /STK=1 /UG=Rn.52617 /UG_TITLE=ESTs BE116084 lymphatic vessel endothelial hyaluronan receptor 1 Lyve1 293186 NM_001106286 0006027 // glycosaminoglycan catabolic process // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // not recorded 0005886 // plasma membrane // not recorded 0004888 // transmembrane receptor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // not recorded 1382733_at AW915163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915163 /DB_XREF=gi:8080850 /DB_XREF=EST346467 /CLONE=RGICL53 /FEA=EST /CNT=3 /TID=Rn.7095.1 /TIER=ConsEnd /STK=1 /UG=Rn.7095 /UG_TITLE=ESTs AW915163 1382734_at AI715578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715578 /DB_XREF=gi:5032831 /DB_XREF=UI-R-Y0-abs-b-12-0-UI.s1 /CLONE=UI-R-Y0-abs-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.41156.1 /TIER=ConsEnd /STK=1 /UG=Rn.41156 /UG_TITLE=ESTs AI715578 1382735_at BF563278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563278 /DB_XREF=gi:11673008 /DB_XREF=UI-R-BO1-aji-c-04-0-UI.r1 /CLONE=UI-R-BO1-aji-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.76527.1 /TIER=ConsEnd /STK=1 /UG=Rn.76527 /UG_TITLE=ESTs, Moderately similar to APGB_MOUSE Autophagy protein 12-like (APG12-like) (M.musculus) BF563278 ATG12 autophagy related 12 homolog (S. cerevisiae) Atg12 361321 NM_001038495 0000045 // autophagic vacuole assembly // inferred from electronic annotation /// 0000045 // autophagic vacuole assembly // not recorded /// 0006914 // autophagy // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0034045 // pre-autophagosomal structure membrane // inferred from electronic annotation /// 0034045 // pre-autophagosomal structure membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382736_at AI407047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407047 /DB_XREF=gi:4250551 /DB_XREF=EST235335 /CLONE=ROVDR29 /FEA=EST /CNT=3 /TID=Rn.44016.1 /TIER=ConsEnd /STK=1 /UG=Rn.44016 /UG_TITLE=ESTs AI407047 1382737_at AI059118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059118 /DB_XREF=gi:3332895 /DB_XREF=UI-R-C1-lr-h-04-0-UI.s1 /CLONE=UI-R-C1-lr-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.64370.1 /TIER=ConsEnd /STK=1 /UG=Rn.64370 /UG_TITLE=ESTs AI059118 similar to RIKEN cDNA 6430548M08 RGD1304884 307907 NM_001107436 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 1382738_at BF282918 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282918 /DB_XREF=gi:11213988 /DB_XREF=EST447509 /CLONE=RGIDU95 /FEA=EST /CNT=3 /TID=Rn.23438.1 /TIER=ConsEnd /STK=1 /UG=Rn.23438 /UG_TITLE=ESTs BF282918 1382739_at AI045718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045718 /DB_XREF=gi:3292537 /DB_XREF=UI-R-C1-jy-c-09-0-UI.s2 /CLONE=UI-R-C1-jy-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.20912.1 /TIER=ConsEnd /STK=1 /UG=Rn.20912 /UG_TITLE=ESTs, Highly similar to GPRJ RAT PROBABLE G PROTEIN-COUPLED RECEPTOR GPR19 (R.norvegicus) AI045718 G protein-coupled receptor 19 Gpr19 312787 NM_080579 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1382740_at AI071726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071726 /DB_XREF=gi:3397941 /DB_XREF=UI-R-C2-nc-g-12-0-UI.s1 /CLONE=UI-R-C2-nc-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.22978.1 /TIER=ConsEnd /STK=1 /UG=Rn.22978 /UG_TITLE=ESTs AI071726 1382741_at BI285961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285961 /DB_XREF=gi:14940134 /DB_XREF=UI-R-CX0s-ccp-h-01-0-UI.s1 /CLONE=UI-R-CX0s-ccp-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.45254.2 /TIER=ConsEnd /STK=1 /UG=Rn.45254 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BI285961 ubiquitin protein ligase E3A Ube3a 361585 NM_001191837 /// XM_001055915 /// XM_341867 0001541 // ovarian follicle development // not recorded /// 0006464 // protein modification process // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0030521 // androgen receptor signaling pathway // not recorded /// 0035037 // sperm entry // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060736 // prostate gland growth // not recorded /// 0070936 // protein K48-linked ubiquitination // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded 0003713 // transcription coactivator activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1382742_at AI176758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176758 /DB_XREF=gi:3727396 /DB_XREF=EST220352 /CLONE=ROVBW44 /FEA=EST /CNT=3 /TID=Rn.55663.1 /TIER=ConsEnd /STK=1 /UG=Rn.55663 /UG_TITLE=ESTs AI176758 1382743_at AI578576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578576 /DB_XREF=gi:4562952 /DB_XREF=UI-R-AA0-wl-h-03-0-UI.s1 /CLONE=UI-R-AA0-wl-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.22948.1 /TIER=ConsEnd /STK=1 /UG=Rn.22948 /UG_TITLE=ESTs AI578576 Intermediate filament family orphan 2 Iffo2 641315 NM_001134703 1382744_at H33694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33694 /DB_XREF=gi:979111 /DB_XREF=EST109940 /CLONE=RPNAX40 /FEA=EST /CNT=3 /TID=Rn.8231.2 /TIER=ConsEnd /STK=1 /UG=Rn.8231 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) H33694 zinc finger with KRAB and SCAN domains 3 Zkscan3 306977 NM_001012053 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1382745_at BE108581 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108581 /DB_XREF=gi:8500686 /DB_XREF=UI-R-CA0-axf-h-09-0-UI.s1 /CLONE=UI-R-CA0-axf-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.33515.1 /TIER=ConsEnd /STK=1 /UG=Rn.33515 /UG_TITLE=ESTs BE108581 1382746_s_at BE108581 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108581 /DB_XREF=gi:8500686 /DB_XREF=UI-R-CA0-axf-h-09-0-UI.s1 /CLONE=UI-R-CA0-axf-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.33515.1 /TIER=ConsEnd /STK=1 /UG=Rn.33515 /UG_TITLE=ESTs BE108581 1382747_at AI410331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410331 /DB_XREF=gi:4253835 /DB_XREF=EST238624 /CLONE=RKIDX73 /FEA=EST /CNT=3 /TID=Rn.43269.1 /TIER=ConsEnd /STK=1 /UG=Rn.43269 /UG_TITLE=ESTs, Moderately similar to T17335 hypothetical protein DKFZp434G145.1 (H.sapiens) AI410331 rotatin Rttn 291377 NM_001170436 0007368 // determination of left/right symmetry // not recorded 0005488 // binding // inferred from electronic annotation 1382748_at AI145481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145481 /DB_XREF=gi:3667280 /DB_XREF=UI-R-BT0-qf-d-09-0-UI.s1 /CLONE=UI-R-BT0-qf-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.54738.1 /TIER=ConsEnd /STK=1 /UG=Rn.54738 /UG_TITLE=ESTs AI145481 methylmalonyl-Coenzyme A mutase Mut 688517 XM_001067239 0008152 // metabolic process // not recorded /// 0009791 // post-embryonic development // not recorded 0005739 // mitochondrion // not recorded 0004494 // methylmalonyl-CoA mutase activity // inferred from electronic annotation /// 0004494 // methylmalonyl-CoA mutase activity // not recorded /// 0031419 // cobalamin binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382749_at BI293987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293987 /DB_XREF=gi:14956011 /DB_XREF=UI-R-DK0-cdy-a-02-0-UI.s1 /CLONE=UI-R-DK0-cdy-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.14651.1 /TIER=ConsEnd /STK=1 /UG=Rn.14651 /UG_TITLE=ESTs, Highly similar to RNA binding motif protein 5 (H.sapiens) BI293987 RNA binding motif protein 5 Rbm5 300996 NM_001100548 0000245 // spliceosome assembly // not recorded /// 0000245 // spliceosome assembly // inferred from sequence or structural similarity /// 0000245 // spliceosome assembly // inferred from electronic annotation /// 0000381 // regulation of alternative nuclear mRNA splicing, via spliceosome // not recorded /// 0000381 // regulation of alternative nuclear mRNA splicing, via spliceosome // inferred from sequence or structural similarity /// 0000381 // regulation of alternative nuclear mRNA splicing, via spliceosome // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0003729 // mRNA binding // inferred from sequence or structural similarity /// 0003729 // mRNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382750_at AI058503 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058503 /DB_XREF=gi:3332280 /DB_XREF=UI-R-C1-kv-d-02-0-UI.s1 /CLONE=UI-R-C1-kv-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.20961.1 /TIER=ConsEnd /STK=1 /UG=Rn.20961 /UG_TITLE=ESTs, Moderately similar to Y247_HUMAN HYPOTHETICAL PROTEIN KIAA0247 (H.sapiens) AI058503 1382751_at BF549536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549536 /DB_XREF=gi:11659266 /DB_XREF=UI-R-C1-lf-a-05-0-UI.r1 /CLONE=UI-R-C1-lf-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.18975.1 /TIER=ConsEnd /STK=1 /UG=Rn.18975 /UG_TITLE=ESTs BF549536 WAP four-disulfide core domain 10 Wfdc10 685216 NM_001109461 0005576 // extracellular region // inferred from electronic annotation 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1382752_at AA685882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA685882 /DB_XREF=gi:2672480 /DB_XREF=EST108501 /CLONE=RPNAA51 /FEA=EST /CNT=3 /TID=Rn.13437.1 /TIER=ConsEnd /STK=1 /UG=Rn.13437 /UG_TITLE=ESTs AA685882 Tumor protein p53 binding protein 1 Tp53bp1 296099 NM_001106501 0006281 // DNA repair // not recorded 0000776 // kinetochore // not recorded /// 0000781 // chromosome, telomeric region // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005657 // replication fork // not recorded /// 0005737 // cytoplasm // not recorded 0003684 // damaged DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0042162 // telomeric DNA binding // not recorded 1382753_at AI059982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059982 /DB_XREF=gi:3333759 /DB_XREF=UI-R-C1-la-h-01-0-UI.s1 /CLONE=UI-R-C1-la-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.19515.1 /TIER=ConsEnd /STK=1 /UG=Rn.19515 /UG_TITLE=ESTs, Moderately similar to A56956 GTP-binding protein-associated protein (M.musculus) AI059982 1382754_at H33080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33080 /DB_XREF=gi:978497 /DB_XREF=EST108733 /CLONE=RPNAG49 /FEA=EST /CNT=3 /TID=Rn.14621.1 /TIER=ConsEnd /STK=1 /UG=Rn.14621 /UG_TITLE=ESTs H33080 1382755_at AI058343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058343 /DB_XREF=gi:3332120 /DB_XREF=UI-R-C1-kn-d-05-0-UI.s1 /CLONE=UI-R-C1-kn-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.23369.1 /TIER=ConsEnd /STK=1 /UG=Rn.23369 /UG_TITLE=ESTs AI058343 1382756_at AI101822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101822 /DB_XREF=gi:3706679 /DB_XREF=EST211111 /CLONE=RBRBV57 /FEA=EST /CNT=3 /TID=Rn.17065.1 /TIER=ConsEnd /STK=1 /UG=Rn.17065 /UG_TITLE=ESTs AI101822 karyopherin alpha 1 Kpna1 288064 NM_198726 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation 1382757_at AA850108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850108 /DB_XREF=gi:4131793 /DB_XREF=EST192875 /CLONE=ROVAB92 /FEA=EST /CNT=3 /TID=Rn.30201.1 /TIER=ConsEnd /STK=1 /UG=Rn.30201 /UG_TITLE=ESTs AA850108 1382758_at AA955094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955094 /DB_XREF=gi:4238724 /DB_XREF=UI-R-A1-ez-f-11-0-UI.s2 /CLONE=UI-R-A1-ez-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.23101.1 /TIER=ConsEnd /STK=1 /UG=Rn.23101 /UG_TITLE=ESTs, Weakly similar to putative cytochrome oxidase (Escherichia coli K12) (E.coli) AA955094 solute carrier family 10 (sodium/bile acid cotransporter family), member 7 Slc10a7 291942 NM_001010948 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008508 // bile acid:sodium symporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation 1382759_at AI454681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454681 /DB_XREF=gi:4295425 /DB_XREF=UI-R-BT0-qk-d-03-0-UI.s1 /CLONE=UI-R-BT0-qk-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.19245.1 /TIER=ConsEnd /STK=1 /UG=Rn.19245 /UG_TITLE=ESTs AI454681 1382760_at AA899481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899481 /DB_XREF=gi:4231979 /DB_XREF=UI-R-E0-de-c-02-0-UI.s1 /CLONE=UI-R-E0-de-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.22915.1 /TIER=ConsEnd /STK=1 /UG=Rn.22915 /UG_TITLE=ESTs AA899481 1382761_at AW535566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535566 /DB_XREF=gi:7177980 /DB_XREF=UI-R-C4-aly-a-10-0-UI.s1 /CLONE=UI-R-C4-aly-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.23018.1 /TIER=ConsEnd /STK=1 /UG=Rn.23018 /UG_TITLE=ESTs AW535566 Phosphodiesterase 7A Pde7a 81744 NM_031080 0007165 // signal transduction // inferred from electronic annotation /// 0019933 // cAMP-mediated signaling // inferred from expression pattern 0003824 // catalytic activity // inferred from electronic annotation /// 0004112 // cyclic-nucleotide phosphodiesterase activity // inferred from mutant phenotype /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // not recorded /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // traceable author statement /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382762_at AI105359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105359 /DB_XREF=gi:3709456 /DB_XREF=EST214648 /CLONE=RKIBJ32 /FEA=EST /CNT=3 /TID=Rn.24236.1 /TIER=ConsEnd /STK=1 /UG=Rn.24236 /UG_TITLE=ESTs, Moderately similar to AGM1_HUMAN PHOSPHOACETYLGLUCOSAMINE MUTASE (PAGM) (ACETYLGLUCOSAMINE PHOSPHOMUTASE) (N-ACETYLGLUCOSAMINE-PHOSPHATE MUTASE) (H.sapiens) AI105359 Phosphoglucomutase 3 Pgm3 363109 NM_001108772 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006048 // UDP-N-acetylglucosamine biosynthetic process // not recorded /// 0007283 // spermatogenesis // not recorded /// 0009790 // embryo development // not recorded /// 0019255 // glucose 1-phosphate metabolic process // not recorded /// 0030097 // hemopoiesis // not recorded 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004610 // phosphoacetylglucosamine mutase activity // inferred from electronic annotation /// 0004610 // phosphoacetylglucosamine mutase activity // not recorded /// 0004614 // phosphoglucomutase activity // not recorded /// 0016868 // intramolecular transferase activity, phosphotransferases // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382763_at AW921300 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921300 /DB_XREF=gi:8087124 /DB_XREF=EST352604 /CLONE=RGIHQ73 /FEA=EST /CNT=3 /TID=Rn.81780.1 /TIER=ConsEnd /STK=1 /UG=Rn.81780 /UG_TITLE=ESTs AW921300 hypothetical protein LOC691921 LOC691921 691921 NM_001135566 1382764_at AI137160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137160 /DB_XREF=gi:3637937 /DB_XREF=UI-R-C2p-oh-c-08-0-UI.s1 /CLONE=UI-R-C2p-oh-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.24034.1 /TIER=ConsEnd /STK=1 /UG=Rn.24034 /UG_TITLE=ESTs AI137160 1382765_at AA996645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996645 /DB_XREF=gi:4280412 /DB_XREF=UI-R-C0-hj-c-07-0-UI.s1 /CLONE=UI-R-C0-hj-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.12353.1 /TIER=ConsEnd /STK=1 /UG=Rn.12353 /UG_TITLE=ESTs AA996645 similar to Centrosomal protein of 27 kDa (Cep27 protein) LOC691918 691918 XM_001080091 /// XM_002726164 /// XM_002726165 1382766_at BF288024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288024 /DB_XREF=gi:11219094 /DB_XREF=EST452615 /CLONE=RGIGO38 /FEA=EST /CNT=3 /TID=Rn.55486.1 /TIER=ConsEnd /STK=1 /UG=Rn.55486 /UG_TITLE=ESTs BF288024 erythropoietin receptor Epor 24336 NM_017002 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0046697 // decidualization // inferred from electronic annotation /// 0046697 // decidualization // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004900 // erythropoietin receptor activity // inferred from direct assay /// 0004900 // erythropoietin receptor activity // not recorded /// 0004900 // erythropoietin receptor activity // inferred from sequence or structural similarity /// 0004900 // erythropoietin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382767_at AI175752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175752 /DB_XREF=gi:3726390 /DB_XREF=EST219319 /CLONE=ROVBE82 /FEA=EST /CNT=3 /TID=Rn.3275.1 /TIER=ConsEnd /STK=1 /UG=Rn.3275 /UG_TITLE=ESTs, Weakly similar to RETICULOCALBIN 2 PRECURSOR (R.norvegicus) AI175752 Reticulocalbin 1, EF-hand calcium binding domain Rcn1 362182 NM_001108586 0005509 // calcium ion binding // inferred from electronic annotation 1382768_at BF289486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289486 /DB_XREF=gi:11220556 /DB_XREF=EST454077 /CLONE=RGIHH81 /FEA=EST /CNT=3 /TID=Rn.55780.1 /TIER=ConsEnd /STK=1 /UG=Rn.55780 /UG_TITLE=ESTs BF289486 Similar to cullin 7 LOC680835 680835 XM_001056520 /// XM_002727163 0001570 // vasculogenesis // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0030071 // regulation of mitotic metaphase/anaphase transition // inferred from electronic annotation 0005680 // anaphase-promoting complex // inferred from electronic annotation /// 0031461 // cullin-RING ubiquitin ligase complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation 1382769_at AA996880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996880 /DB_XREF=gi:4280644 /DB_XREF=UI-R-C0-hh-b-12-0-UI.s1 /CLONE=UI-R-C0-hh-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.66458.1 /TIER=ConsEnd /STK=1 /UG=Rn.66458 /UG_TITLE=ESTs AA996880 Interferon (alpha, beta and omega) receptor 1 Ifnar1 288264 NM_001105893 0007596 // blood coagulation // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0042110 // T cell activation // not recorded /// 0045351 // type I interferon biosynthetic process // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004904 // interferon receptor activity // not recorded /// 0005515 // protein binding // not recorded 1382770_at BG376622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376622 /DB_XREF=gi:13301094 /DB_XREF=UI-R-CU0-buu-h-02-0-UI.s1 /CLONE=UI-R-CU0-buu-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.66406.1 /TIER=ConsEnd /STK=1 /UG=Rn.66406 /UG_TITLE=ESTs BG376622 similar to hypothetical protein MGC52110 RGD1565095 503252 NM_001195488 /// XM_001057297 /// XM_578786 0005739 // mitochondrion // not recorded 1382771_at AI059377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059377 /DB_XREF=gi:3333154 /DB_XREF=UI-R-C1-ld-g-12-0-UI.s1 /CLONE=UI-R-C1-ld-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.19153.1 /TIER=ConsEnd /STK=1 /UG=Rn.19153 /UG_TITLE=ESTs AI059377 Phospholipid transfer protein Pltp 296371 NM_001168543 0008289 // lipid binding // inferred from electronic annotation 1382772_at BF289261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289261 /DB_XREF=gi:11220331 /DB_XREF=EST453852 /CLONE=RGIHC80 /FEA=EST /CNT=3 /TID=Rn.25314.1 /TIER=ConsEnd /STK=1 /UG=Rn.25314 /UG_TITLE=ESTs BF289261 1382773_at AI235484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235484 /DB_XREF=gi:3828990 /DB_XREF=EST232046 /CLONE=ROVCS42 /FEA=EST /CNT=3 /TID=Rn.55755.1 /TIER=ConsEnd /STK=1 /UG=Rn.55755 /UG_TITLE=ESTs AI235484 1382774_at AA997070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997070 /DB_XREF=gi:4281250 /DB_XREF=UI-R-C0-hr-a-02-0-UI.s1 /CLONE=UI-R-C0-hr-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.12601.1 /TIER=ConsEnd /STK=1 /UG=Rn.12601 /UG_TITLE=ESTs AA997070 paternally expressed 12 Peg12 308692 NM_001170562 /// XM_001057369 /// XM_218737 0000578 // embryonic axis specification // not recorded /// 0016055 // Wnt receptor signaling pathway // not recorded 1382775_at BF418135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418135 /DB_XREF=gi:11406124 /DB_XREF=UI-R-CA0-blz-h-07-0-UI.s1 /CLONE=UI-R-CA0-blz-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.64412.1 /TIER=ConsEnd /STK=1 /UG=Rn.64412 /UG_TITLE=ESTs, Highly similar to ryanodine receptor type 2 (M.musculus) BF418135 ryanodine receptor 2, cardiac Ryr2 689560 NM_001191043 /// NM_032078 0005513 // detection of calcium ion // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from expression pattern /// 0008627 // induction of apoptosis by ionic changes // inferred from electronic annotation /// 0014808 // release of sequestered calcium ion into cytosol by sarcoplasmic reticulum // inferred from direct assay /// 0031000 // response to caffeine // inferred from electronic annotation /// 0031000 // response to caffeine // inferred from direct assay /// 0032026 // response to magnesium ion // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0051209 // release of sequestered calcium ion into cytosol // inferred from direct assay /// 0051480 // cytosolic calcium ion homeostasis // inferred from mutant phenotype /// 0051480 // cytosolic calcium ion homeostasis // inferred from direct assay /// 0051592 // response to calcium ion // inferred from direct assay /// 0051775 // response to redox state // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060048 // cardiac muscle contraction // inferred from electronic annotation 0001950 // plasma membrane enriched fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030018 // Z disc // inferred from direct assay /// 0030018 // Z disc // inferred from electronic annotation /// 0033017 // sarcoplasmic reticulum membrane // inferred from electronic annotation /// 0034704 // calcium channel complex // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005219 // ryanodine-sensitive calcium-release channel activity // inferred from electronic annotation /// 0005219 // ryanodine-sensitive calcium-release channel activity // inferred from direct assay /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0015278 // calcium-release channel activity // inferred from electronic annotation /// 0034236 // protein kinase A catalytic subunit binding // inferred from electronic annotation /// 0034237 // protein kinase A regulatory subunit binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0043924 // suramin binding // inferred from electronic annotation 1382776_at AI716936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716936 /DB_XREF=gi:5034192 /DB_XREF=UI-R-Y0-aci-h-11-0-UI.s1 /CLONE=UI-R-Y0-aci-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.14994.1 /TIER=ConsEnd /STK=1 /UG=Rn.14994 /UG_TITLE=ESTs AI716936 membrane bound O-acyltransferase domain containing 1 Mboat1 498741 NM_001109120 1382777_at BE108796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108796 /DB_XREF=gi:8500901 /DB_XREF=UI-R-BS1-ayy-e-07-0-UI.s1 /CLONE=UI-R-BS1-ayy-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.8841.1 /TIER=ConsEnd /STK=1 /UG=Rn.8841 /UG_TITLE=ESTs BE108796 1382778_at AI231350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231350 /DB_XREF=gi:3815230 /DB_XREF=EST228038 /CLONE=REMDI92 /FEA=EST /CNT=3 /TID=Rn.13146.2 /TIER=ConsEnd /STK=1 /UG=Rn.13146 /UG_TITLE=ESTs AI231350 Dual specificity phosphatase 6 Dusp6 116663 NM_053883 0000188 // inactivation of MAPK activity // inferred from electronic annotation /// 0000188 // inactivation of MAPK activity // not recorded /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // not recorded /// 0006470 // protein dephosphorylation // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from expression pattern /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0051409 // response to nitrosative stress // inferred from electronic annotation /// 0051409 // response to nitrosative stress // not recorded /// 0060420 // regulation of heart growth // inferred from electronic annotation /// 0060420 // regulation of heart growth // not recorded /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0070373 // negative regulation of ERK1 and ERK2 cascade // not recorded /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070848 // response to growth factor stimulus // inferred from expression pattern 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // not recorded /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from direct assay /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // not recorded 1382779_at BF285833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285833 /DB_XREF=gi:11216903 /DB_XREF=EST450424 /CLONE=RGIFK49 /FEA=EST /CNT=3 /TID=Rn.28116.1 /TIER=ConsEnd /STK=1 /UG=Rn.28116 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BF285833 HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1 Hace1 361866 NM_001108539 0006464 // protein modification process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1382780_at AI059229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059229 /DB_XREF=gi:3333006 /DB_XREF=UI-R-C1-ld-b-02-0-UI.s1 /CLONE=UI-R-C1-ld-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.21060.1 /TIER=ConsEnd /STK=1 /UG=Rn.21060 /UG_TITLE=ESTs AI059229 1382781_at AI764741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764741 /DB_XREF=gi:5210676 /DB_XREF=UI-R-Y0-ace-e-10-0-UI.s1 /CLONE=UI-R-Y0-ace-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.20545.1 /TIER=ConsEnd /STK=1 /UG=Rn.20545 /UG_TITLE=ESTs AI764741 1382782_at AI102331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102331 /DB_XREF=gi:3707125 /DB_XREF=EST211620 /CLONE=RBRCC19 /FEA=EST /CNT=3 /TID=Rn.48907.1 /TIER=ConsEnd /STK=1 /UG=Rn.48907 /UG_TITLE=ESTs, Moderately similar to AF151849 1 CGI-91 protein (H.sapiens) AI102331 mitochondrial ribosomal protein S2 Mrps2 362094 NM_001108576 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1382783_at BF408187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408187 /DB_XREF=gi:11396162 /DB_XREF=UI-R-BJ2-bra-g-05-0-UI.s1 /CLONE=UI-R-BJ2-bra-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.61121.1 /TIER=ConsEnd /STK=1 /UG=Rn.61121 /UG_TITLE=ESTs, Moderately similar to BLM MOUSE BLOOMS SYNDROME PROTEIN HOMOLOG (M.musculus) BF408187 0006260 // DNA replication // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0044237 // cellular metabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0043140 // ATP-dependent 3'-5' DNA helicase activity // inferred from electronic annotation 1382784_at AI058332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058332 /DB_XREF=gi:3332109 /DB_XREF=UI-R-C1-kn-b-06-0-UI.s1 /CLONE=UI-R-C1-kn-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.24074.1 /TIER=ConsEnd /STK=1 /UG=Rn.24074 /UG_TITLE=ESTs AI058332 angel homolog 2 (Drosophila) Angel2 305035 NM_001135119 1382785_at BE105549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105549 /DB_XREF=gi:8497651 /DB_XREF=UI-R-BX0-ash-b-03-0-UI.s1 /CLONE=UI-R-BX0-ash-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.21565.1 /TIER=ConsEnd /STK=1 /UG=Rn.21565 /UG_TITLE=ESTs, Highly similar to KF1A MOUSE KINESIN-LIKE PROTEIN KIF1A (M.musculus) BE105549 kinesin family member 1A Kif1a 363288 XM_001070053 /// XM_001070204 /// XM_002727250 /// XM_343630 0007018 // microtubule-based movement // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1382786_at BF523557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523557 /DB_XREF=gi:11631524 /DB_XREF=UI-R-C0-jk-f-07-0-UI.r1 /CLONE=UI-R-C0-jk-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.17452.1 /TIER=ConsEnd /STK=1 /UG=Rn.17452 /UG_TITLE=ESTs BF523557 1382787_at BF408765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408765 /DB_XREF=gi:11396740 /DB_XREF=UI-R-BT1-bne-a-09-0-UI.s1 /CLONE=UI-R-BT1-bne-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.71500.1 /TIER=ConsEnd /STK=1 /UG=Rn.71500 /UG_TITLE=ESTs, Highly similar to KINN_MOUSE NEURONAL KINESIN HEAVY CHAIN (NKHC) (KINESIN HEAVY CHAIN ISOFORM 5A) (KINESIN HEAVY CHAIN NEURON-SPECIFIC 1) (M.musculus) BF408765 kinesin family member 5A Kif5a 314906 NM_212523 0007017 // microtubule-based process // traceable author statement /// 0007018 // microtubule-based movement // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005871 // kinesin complex // inferred from direct assay /// 0005871 // kinesin complex // traceable author statement /// 0005874 // microtubule // inferred from electronic annotation /// 0033267 // axon part // inferred from direct assay /// 0035253 // ciliary rootlet // inferred from electronic annotation /// 0035253 // ciliary rootlet // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // traceable author statement /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1382788_at BF289111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289111 /DB_XREF=gi:11220181 /DB_XREF=EST453702 /CLONE=RGIHB23 /FEA=EST /CNT=3 /TID=Rn.55710.1 /TIER=ConsEnd /STK=1 /UG=Rn.55710 /UG_TITLE=ESTs BF289111 1382789_at BM389812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389812 /DB_XREF=gi:18189865 /DB_XREF=UI-R-CN1-cjp-h-21-0-UI.s1 /CLONE=UI-R-CN1-cjp-h-21-0-UI /FEA=EST /CNT=3 /TID=Rn.64949.1 /TIER=ConsEnd /STK=1 /UG=Rn.64949 /UG_TITLE=ESTs BM389812 1382790_at AI639485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639485 /DB_XREF=gi:4700519 /DB_XREF=rx02411s /CLONE=rx02411 /FEA=EST /CNT=3 /TID=Rn.8034.2 /TIER=ConsEnd /STK=1 /UG=Rn.8034 /UG_TITLE=ESTs AI639485 structural maintenance of chromosomes 5 Smc5 293967 NM_001106357 0005694 // chromosome // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation 1382791_at AI716238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716238 /DB_XREF=gi:5033491 /DB_XREF=UI-R-Y0-abr-d-09-0-UI.s1 /CLONE=UI-R-Y0-abr-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.16246.1 /TIER=ConsEnd /STK=1 /UG=Rn.16246 /UG_TITLE=ESTs AI716238 zinc finger protein 627-like LOC100360616 100360616 XM_002725165 /// XM_002728382 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1382792_at BF412158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412158 /DB_XREF=gi:11400147 /DB_XREF=UI-R-BT1-bmu-e-08-0-UI.s1 /CLONE=UI-R-BT1-bmu-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.53667.1 /TIER=ConsEnd /STK=1 /UG=Rn.53667 /UG_TITLE=ESTs BF412158 1382793_at BF288344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288344 /DB_XREF=gi:11219414 /DB_XREF=EST452935 /CLONE=RGIGS65 /FEA=EST /CNT=3 /TID=Rn.7036.1 /TIER=ConsEnd /STK=1 /UG=Rn.7036 /UG_TITLE=ESTs BF288344 1382794_at AI179878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179878 /DB_XREF=gi:3730516 /DB_XREF=EST223609 /CLONE=RSPCN20 /FEA=EST /CNT=3 /TID=Rn.55905.1 /TIER=ConsEnd /STK=1 /UG=Rn.55905 /UG_TITLE=ESTs AI179878 1382795_at AI228346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228346 /DB_XREF=gi:3812233 /DB_XREF=EST225041 /CLONE=RBRCT55 /FEA=EST /CNT=3 /TID=Rn.24315.1 /TIER=ConsEnd /STK=1 /UG=Rn.24315 /UG_TITLE=ESTs AI228346 1382796_at AI029182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029182 /DB_XREF=gi:4296788 /DB_XREF=UI-R-C0-iv-h-07-0-UI.s1 /CLONE=UI-R-C0-iv-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.18166.1 /TIER=ConsEnd /STK=1 /UG=Rn.18166 /UG_TITLE=ESTs AI029182 1382797_at AW526331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526331 /DB_XREF=gi:7168716 /DB_XREF=UI-R-BO1-aja-g-09-0-UI.s1 /CLONE=UI-R-BO1-aja-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.46166.1 /TIER=ConsEnd /STK=1 /UG=Rn.46166 /UG_TITLE=ESTs AW526331 similar to 1500019C06Rik protein RGD1560433 296750 XM_001061644 /// XM_002729270 1382798_at AI045251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045251 /DB_XREF=gi:3292070 /DB_XREF=UI-R-C1-kh-e-12-0-UI.s1 /CLONE=UI-R-C1-kh-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.17182.1 /TIER=ConsEnd /STK=1 /UG=Rn.17182 /UG_TITLE=ESTs AI045251 1382799_at AA998800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998800 /DB_XREF=gi:4292360 /DB_XREF=UI-R-C0-im-h-09-0-UI.s1 /CLONE=UI-R-C0-im-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.23320.1 /TIER=ConsEnd /STK=1 /UG=Rn.23320 /UG_TITLE=ESTs AA998800 1382800_at AI234840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234840 /DB_XREF=gi:3828346 /DB_XREF=EST231402 /CLONE=ROVCI47 /FEA=EST /CNT=3 /TID=Rn.25282.1 /TIER=ConsEnd /STK=1 /UG=Rn.25282 /UG_TITLE=ESTs AI234840 1382801_at AI043667 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043667 /DB_XREF=gi:3290402 /DB_XREF=UI-R-C0-jl-a-03-0-UI.s1 /CLONE=UI-R-C0-jl-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.21668.1 /TIER=ConsEnd /STK=1 /UG=Rn.21668 /UG_TITLE=ESTs AI043667 1382802_x_at AW920828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920828 /DB_XREF=gi:8086644 /DB_XREF=EST352132 /CLONE=RGIHD31 /FEA=EST /CNT=3 /TID=Rn.42780.1 /TIER=ConsEnd /STK=1 /UG=Rn.42780 /UG_TITLE=ESTs, Weakly similar to RETROVIRUS-RELATED POL POLYPROTEIN (M.musculus) AW920828 1382803_at AI237423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237423 /DB_XREF=gi:3830929 /DB_XREF=EST233985 /CLONE=RPLCY91 /FEA=EST /CNT=3 /TID=Rn.49274.1 /TIER=ConsEnd /STK=1 /UG=Rn.49274 /UG_TITLE=ESTs AI237423 mitogen activated protein kinase kinase kinase kinase 1 Map4k1 292763 NM_001106243 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006950 // response to stress // not recorded /// 0007243 // intracellular protein kinase cascade // not recorded /// 0018105 // peptidyl-serine phosphorylation // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008349 // MAP kinase kinase kinase kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1382804_at AI234621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234621 /DB_XREF=gi:3828127 /DB_XREF=EST231183 /CLONE=RLUDC43 /FEA=EST /CNT=3 /TID=Rn.25260.1 /TIER=ConsEnd /STK=1 /UG=Rn.25260 /UG_TITLE=ESTs AI234621 1382805_at BF281984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281984 /DB_XREF=gi:11213054 /DB_XREF=EST446575 /CLONE=RGIDA37 /FEA=EST /CNT=3 /TID=Rn.33440.1 /TIER=ConsEnd /STK=1 /UG=Rn.33440 /UG_TITLE=ESTs, Weakly similar to A61231 myosin heavy chain nonmuscle form A (H.sapiens) BF281984 similar to myosin XVIIIa LOC360570 360570 NM_001172137 /// XM_001080824 /// XM_002724521 /// XM_002727778 0016459 // myosin complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1382806_at AI030285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030285 /DB_XREF=gi:3248111 /DB_XREF=UI-R-C0-jb-c-01-0-UI.s1 /CLONE=UI-R-C0-jb-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.18451.1 /TIER=ConsEnd /STK=1 /UG=Rn.18451 /UG_TITLE=ESTs AI030285 1382807_at BE100287 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100287 /DB_XREF=gi:8492176 /DB_XREF=UI-R-BJ1-atn-g-07-0-UI.s1 /CLONE=UI-R-BJ1-atn-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.49952.1 /TIER=ConsEnd /STK=1 /UG=Rn.49952 /UG_TITLE=ESTs BE100287 ATG9 autophagy related 9 homolog A (S. cerevisiae) Atg9a 363254 NM_001014218 0000045 // autophagic vacuole assembly // inferred from electronic annotation /// 0000045 // autophagic vacuole assembly // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006914 // autophagy // inferred from expression pattern /// 0006914 // autophagy // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0000421 // autophagic vacuole membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005776 // autophagic vacuole // not recorded /// 0005776 // autophagic vacuole // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 1382808_at AW919353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919353 /DB_XREF=gi:8085147 /DB_XREF=EST350657 /CLONE=RGIFT20 /FEA=EST /CNT=3 /TID=Rn.7744.1 /TIER=ConsEnd /STK=1 /UG=Rn.7744 /UG_TITLE=ESTs AW919353 1382809_at AW921084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921084 /DB_XREF=gi:8086903 /DB_XREF=EST352388 /CLONE=RGIHN20 /FEA=EST /CNT=3 /TID=Rn.43135.1 /TIER=ConsEnd /STK=1 /UG=Rn.43135 /UG_TITLE=ESTs AW921084 cold inducible RNA binding protein Cirbp 81825 NM_031147 0006950 // response to stress // inferred from electronic annotation /// 0009409 // response to cold // inferred from expression pattern /// 0009411 // response to UV // not recorded /// 0009411 // response to UV // inferred from sequence or structural similarity /// 0017148 // negative regulation of translation // not recorded /// 0034063 // stress granule assembly // inferred from electronic annotation /// 0034063 // stress granule assembly // not recorded /// 0034063 // stress granule assembly // inferred from sequence or structural similarity /// 0045727 // positive regulation of translation // not recorded /// 0045727 // positive regulation of translation // inferred from sequence or structural similarity /// 0048255 // mRNA stabilization // not recorded /// 0048255 // mRNA stabilization // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0010494 // stress granule // inferred from electronic annotation /// 0010494 // stress granule // not recorded /// 0010494 // stress granule // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // not recorded /// 0003730 // mRNA 3'-UTR binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0030371 // translation repressor activity // inferred from electronic annotation /// 0030371 // translation repressor activity // not recorded /// 0030371 // translation repressor activity // inferred from sequence or structural similarity /// 0070181 // SSU rRNA binding // not recorded /// 0070181 // SSU rRNA binding // inferred from sequence or structural similarity 1382810_at BE112342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112342 /DB_XREF=gi:8504447 /DB_XREF=UI-R-BJ1-avh-e-04-0-UI.s1 /CLONE=UI-R-BJ1-avh-e-04-0-UI /FEA=EST /CNT=4 /TID=Rn.6202.1 /TIER=ConsEnd /STK=1 /UG=Rn.6202 /UG_TITLE=ESTs BE112342 1382811_at AA891721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891721 /DB_XREF=gi:3018600 /DB_XREF=EST195524 /CLONE=RKIAF94 /FEA=EST /CNT=4 /TID=Rn.14709.1 /TIER=ConsEnd /STK=1 /UG=Rn.14709 /UG_TITLE=ESTs AA891721 1382812_at BE096595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096595 /DB_XREF=gi:8487526 /DB_XREF=UI-R-BU0-api-a-08-0-UI.s1 /CLONE=UI-R-BU0-api-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.68309.1 /TIER=ConsEnd /STK=1 /UG=Rn.68309 /UG_TITLE=ESTs BE096595 similar to Protein Njmu-R1 RGD1310429 303764 NM_001139506 1382813_at BG377386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377386 /DB_XREF=gi:13301858 /DB_XREF=UI-R-CU0-bvc-h-02-0-UI.s1 /CLONE=UI-R-CU0-bvc-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.49158.1 /TIER=ConsEnd /STK=1 /UG=Rn.49158 /UG_TITLE=ESTs BG377386 protein kinase-like protein SgK196 Sgk196 306549 NM_001024883 0006468 // protein phosphorylation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1382814_at AW521702 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521702 /DB_XREF=gi:7164087 /DB_XREF=UI-R-BO0-ags-g-08-0-UI.s1 /CLONE=UI-R-BO0-ags-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.45227.1 /TIER=ConsEnd /STK=1 /UG=Rn.45227 /UG_TITLE=ESTs AW521702 odz, odd Oz/ten-m homolog 3 (Drosophila) Odz3 306451 NM_001169133 0007165 // signal transduction // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 1382815_at AA850547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850547 /DB_XREF=gi:2938087 /DB_XREF=EST193314 /CLONE=ROVAG94 /FEA=EST /CNT=3 /TID=Rn.7019.1 /TIER=ConsEnd /STK=1 /UG=Rn.7019 /UG_TITLE=ESTs AA850547 1382816_at AI176111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176111 /DB_XREF=gi:3726749 /DB_XREF=EST219690 /CLONE=ROVBK76 /FEA=EST /CNT=3 /TID=Rn.18661.1 /TIER=ConsEnd /STK=1 /UG=Rn.18661 /UG_TITLE=ESTs AI176111 1382817_at AA891758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891758 /DB_XREF=gi:3018637 /DB_XREF=EST195561 /CLONE=RKIAG42 /FEA=EST /CNT=3 /TID=Rn.55967.1 /TIER=ConsEnd /STK=1 /UG=Rn.55967 /UG_TITLE=ESTs, Moderately similar to minichromosome maintenance deficient (S. cerevisiae) 3-associate; nuclear protein GANP (Mus musculus) (M.musculus) AA891758 minichromosome maintenance complex component 3 associated protein Mcm3ap 294339 NM_001106382 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation 1382818_at AI177067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177067 /DB_XREF=gi:3727705 /DB_XREF=EST220674 /CLONE=ROVCA39 /FEA=EST /CNT=3 /TID=Rn.64888.1 /TIER=ConsEnd /STK=1 /UG=Rn.64888 /UG_TITLE=ESTs AI177067 family with sequence similarity 126, member B Fam126b 316415 NM_001025710 0005622 // intracellular // not recorded 1382819_at AI717472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717472 /DB_XREF=gi:5034728 /DB_XREF=UI-R-Y0-acb-e-10-0-UI.s1 /CLONE=UI-R-Y0-acb-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.40774.1 /TIER=ConsEnd /STK=1 /UG=Rn.40774 /UG_TITLE=ESTs, Weakly similar to A40805 b-locus protein - mouse (M.musculus) AI717472 tyrosinase-related protein 1 Tyrp1 298182 NM_001106664 0006582 // melanin metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0030318 // melanocyte differentiation // not recorded /// 0032438 // melanosome organization // not recorded /// 0042438 // melanin biosynthetic process // inferred from electronic annotation /// 0043438 // acetoacetic acid metabolic process // not recorded /// 0043473 // pigmentation // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0033162 // melanosome membrane // inferred from electronic annotation /// 0042470 // melanosome // not recorded 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016716 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1382820_at AI176342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176342 /DB_XREF=gi:3726980 /DB_XREF=EST219925 /CLONE=ROVBQ36 /FEA=EST /CNT=3 /TID=Rn.40573.1 /TIER=ConsEnd /STK=1 /UG=Rn.40573 /UG_TITLE=ESTs AI176342 1382821_at AA998957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998957 /DB_XREF=gi:4293039 /DB_XREF=UI-R-C0-ig-c-10-0-UI.s1 /CLONE=UI-R-C0-ig-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.13229.1 /TIER=ConsEnd /STK=1 /UG=Rn.13229 /UG_TITLE=ESTs AA998957 Protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 Ppfia3 140591 XM_001080725 /// XM_341856 0007269 // neurotransmitter secretion // inferred from mutant phenotype /// 0048172 // regulation of short-term neuronal synaptic plasticity // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation 0005515 // protein binding // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation 1382822_at AI030124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030124 /DB_XREF=gi:3247950 /DB_XREF=UI-R-C0-iz-h-12-0-UI.s1 /CLONE=UI-R-C0-iz-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.18408.1 /TIER=ConsEnd /STK=1 /UG=Rn.18408 /UG_TITLE=ESTs AI030124 1382823_at AI070008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070008 /DB_XREF=gi:3396259 /DB_XREF=UI-R-C1-lp-f-06-0-UI.s1 /CLONE=UI-R-C1-lp-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.64062.1 /TIER=ConsEnd /STK=1 /UG=Rn.64062 /UG_TITLE=ESTs AI070008 1382824_at AI059884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059884 /DB_XREF=gi:3333661 /DB_XREF=UI-R-C1-la-d-11-0-UI.s1 /CLONE=UI-R-C1-la-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.19304.1 /TIER=ConsEnd /STK=1 /UG=Rn.19304 /UG_TITLE=ESTs AI059884 small G protein signaling modulator 1 Sgsm1 288743 NM_001105937 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1382825_at AI060128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060128 /DB_XREF=gi:3333905 /DB_XREF=UI-R-C1-ll-b-06-0-UI.s1 /CLONE=UI-R-C1-ll-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.19374.1 /TIER=ConsEnd /STK=1 /UG=Rn.19374 /UG_TITLE=ESTs AI060128 Putative neuronal cell adhesion molecule Punc 315759 NM_001108160 0050885 // neuromuscular process controlling balance // not recorded 1382826_at AI230741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230741 /DB_XREF=gi:3814628 /DB_XREF=EST227436 /CLONE=REMDA66 /FEA=EST /CNT=3 /TID=Rn.37167.1 /TIER=ConsEnd /STK=1 /UG=Rn.37167 /UG_TITLE=ESTs AI230741 zinc finger protein 385A Zfp385a 685474 NM_001109470 /// NM_001135088 /// NM_001135089 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382827_at AI171633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171633 /DB_XREF=gi:3711673 /DB_XREF=EST217605 /CLONE=RMUBN53 /FEA=EST /CNT=3 /TID=Rn.24310.1 /TIER=ConsEnd /STK=1 /UG=Rn.24310 /UG_TITLE=ESTs AI171633 1382828_at BF401714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401714 /DB_XREF=gi:11389689 /DB_XREF=UI-R-CA0-bgn-g-08-0-UI.s1 /CLONE=UI-R-CA0-bgn-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.76525.1 /TIER=ConsEnd /STK=1 /UG=Rn.76525 /UG_TITLE=ESTs BF401714 RIKEN cDNA A830041P22-like LOC100359879 100359879 XM_002725551 /// XM_002728716 0009607 // response to biotic stimulus // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 1382829_at AI137187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137187 /DB_XREF=gi:3637964 /DB_XREF=UI-R-C2p-oh-g-11-0-UI.s1 /CLONE=UI-R-C2p-oh-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.23530.1 /TIER=ConsEnd /STK=1 /UG=Rn.23530 /UG_TITLE=ESTs AI137187 1382830_at AI071877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071877 /DB_XREF=gi:3398092 /DB_XREF=UI-R-C2-nh-h-09-0-UI.s1 /CLONE=UI-R-C2-nh-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.22013.1 /TIER=ConsEnd /STK=1 /UG=Rn.22013 /UG_TITLE=ESTs AI071877 suppressor of variegation 3-9 homolog 2 (Drosophila) Suv39h2 364785 NM_001108883 0006333 // chromatin assembly or disassembly // not recorded /// 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006338 // chromatin remodeling // not recorded /// 0006479 // protein methylation // not recorded /// 0007140 // male meiosis // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0018022 // peptidyl-lysine methylation // not recorded /// 0032259 // methylation // not recorded /// 0034968 // histone lysine methylation // not recorded /// 0051567 // histone H3-K9 methylation // not recorded 0000785 // chromatin // not recorded /// 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005720 // nuclear heterochromatin // not recorded 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008168 // methyltransferase activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008276 // protein methyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // not recorded /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0046974 // histone methyltransferase activity (H3-K9 specific) // not recorded 1382831_at AI071054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071054 /DB_XREF=gi:3396159 /DB_XREF=UI-R-C1-lo-b-06-0-UI.s1 /CLONE=UI-R-C1-lo-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.19584.1 /TIER=ConsEnd /STK=1 /UG=Rn.19584 /UG_TITLE=ESTs, Weakly similar to Dual specificity phosphatase, catalytic domain (Caenorhabditis elegans) (C.elegans) AI071054 dual specificity phosphatase 18 Dusp18 305477 NM_001013128 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation 1382832_at AI236185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236185 /DB_XREF=gi:3829691 /DB_XREF=EST232747 /CLONE=ROVDC44 /FEA=EST /CNT=3 /TID=Rn.37326.1 /TIER=ConsEnd /STK=1 /UG=Rn.37326 /UG_TITLE=ESTs AI236185 regulator of chromosome condensation 2 Rcc2 298594 XM_001072061 /// XM_216557 1382833_at BF290699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290699 /DB_XREF=gi:11221769 /DB_XREF=EST455290 /CLONE=RGIIB17 /FEA=EST /CNT=3 /TID=Rn.19297.1 /TIER=ConsEnd /STK=1 /UG=Rn.19297 /UG_TITLE=ESTs BF290699 1382834_at AI070996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070996 /DB_XREF=gi:3397247 /DB_XREF=UI-R-C2-na-g-06-0-UI.s1 /CLONE=UI-R-C2-na-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.65506.1 /TIER=ConsEnd /STK=1 /UG=Rn.65506 /UG_TITLE=ESTs AI070996 1382835_at BM387260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387260 /DB_XREF=gi:18187313 /DB_XREF=UI-R-CN1-cjh-m-17-0-UI.s1 /CLONE=UI-R-CN1-cjh-m-17-0-UI /FEA=EST /CNT=2 /TID=Rn.66516.1 /TIER=ConsEnd /STK=1 /UG=Rn.66516 /UG_TITLE=ESTs BM387260 1382836_at AI013990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013990 /DB_XREF=gi:3226926 /DB_XREF=EST207545 /CLONE=RSPBC89 /FEA=EST /CNT=2 /TID=Rn.17927.1 /TIER=ConsEnd /STK=1 /UG=Rn.17927 /UG_TITLE=ESTs AI013990 1382837_at AI009448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009448 /DB_XREF=gi:3223280 /DB_XREF=EST203899 /CLONE=RHEBK20 /FEA=EST /CNT=2 /TID=Rn.21517.1 /TIER=ConsEnd /STK=1 /UG=Rn.21517 /UG_TITLE=ESTs AI009448 1382838_at AA799942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799942 /DB_XREF=gi:2862897 /DB_XREF=EST189439 /CLONE=RHEAH25 /FEA=EST /CNT=2 /TID=Rn.35719.1 /TIER=ConsEnd /STK=1 /UG=Rn.35719 /UG_TITLE=ESTs AA799942 1382839_at AI009109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009109 /DB_XREF=gi:3222941 /DB_XREF=EST203560 /CLONE=REMBI71 /FEA=EST /CNT=2 /TID=Rn.13879.1 /TIER=ConsEnd /STK=1 /UG=Rn.13879 /UG_TITLE=ESTs AI009109 1382840_at AI232423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232423 /DB_XREF=gi:4135758 /DB_XREF=EST229111 /CLONE=RKICB51 /FEA=EST /CNT=2 /TID=Rn.80818.1 /TIER=ConsEnd /STK=1 /UG=Rn.80818 /UG_TITLE=ESTs AI232423 leucine rich repeat containing 19 Lrrc19 680478 NM_001109413 0005515 // protein binding // inferred from electronic annotation 1382841_at AI113091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113091 /DB_XREF=gi:3513040 /DB_XREF=UI-R-E1-fm-d-02-0-UI.s1 /CLONE=UI-R-E1-fm-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.18732.2 /TIER=ConsEnd /STK=1 /UG=Rn.18732 /UG_TITLE=ESTs AI113091 tumor suppressing subtransferable candidate 4 Tssc4 361682 NM_001013194 1382842_at BE107996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107996 /DB_XREF=gi:8500101 /DB_XREF=UI-R-CA0-awz-c-02-0-UI.s1 /CLONE=UI-R-CA0-awz-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.18714.1 /TIER=ConsEnd /STK=1 /UG=Rn.18714 /UG_TITLE=ESTs BE107996 1382843_at AI113219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113219 /DB_XREF=gi:3513168 /DB_XREF=UI-R-C2p-np-h-12-0-UI.s1 /CLONE=UI-R-C2p-np-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.26953.1 /TIER=ConsEnd /STK=1 /UG=Rn.26953 /UG_TITLE=ESTs AI113219 sphingosine-1-phosphate lyase 1 Sgpl1 286896 NM_173116 0001553 // luteinization // inferred from electronic annotation /// 0001553 // luteinization // not recorded /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006672 // ceramide metabolic process // not recorded /// 0006672 // ceramide metabolic process // inferred from sequence or structural similarity /// 0006672 // ceramide metabolic process // inferred from electronic annotation /// 0006807 // nitrogen compound metabolic process // inferred from electronic annotation /// 0006807 // nitrogen compound metabolic process // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from sequence or structural similarity /// 0006915 // apoptosis // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0008209 // androgen metabolic process // inferred from electronic annotation /// 0008209 // androgen metabolic process // not recorded /// 0008210 // estrogen metabolic process // inferred from electronic annotation /// 0008210 // estrogen metabolic process // not recorded /// 0008585 // female gonad development // not recorded /// 0008585 // female gonad development // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0010761 // fibroblast migration // inferred from electronic annotation /// 0010761 // fibroblast migration // not recorded /// 0019752 // carboxylic acid metabolic process // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded /// 0033327 // Leydig cell differentiation // inferred from electronic annotation /// 0033327 // Leydig cell differentiation // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0048008 // platelet-derived growth factor receptor signaling pathway // not recorded /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // not recorded /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded /// 0060325 // face morphogenesis // inferred from electronic annotation /// 0060325 // face morphogenesis // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008117 // sphinganine-1-phosphate aldolase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1382844_at AA819037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819037 /DB_XREF=gi:4227702 /DB_XREF=UI-R-A0-ba-f-03-0-UI.s1 /CLONE=UI-R-A0-ba-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.16595.1 /TIER=ConsEnd /STK=1 /UG=Rn.16595 /UG_TITLE=ESTs AA819037 1382845_at AI101340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101340 /DB_XREF=gi:3706257 /DB_XREF=EST210629 /CLONE=RBRBL74 /FEA=EST /CNT=2 /TID=Rn.64472.1 /TIER=ConsEnd /STK=1 /UG=Rn.64472 /UG_TITLE=ESTs AI101340 1382846_at AI501459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501459 /DB_XREF=gi:4399310 /DB_XREF=UI-R-C2p-sb-d-07-0-UI.s1 /CLONE=UI-R-C2p-sb-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.35363.1 /TIER=ConsEnd /STK=1 /UG=Rn.35363 /UG_TITLE=ESTs AI501459 1382847_at BG663056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663056 /DB_XREF=gi:13884978 /DB_XREF=DRA07F07 /CLONE=DRA07F07 /FEA=EST /CNT=2 /TID=Rn.76522.1 /TIER=ConsEnd /STK=1 /UG=Rn.76522 /UG_TITLE=ESTs BG663056 ash1 (absent, small, or homeotic)-like (Drosophila) Ash1l 310638 NM_001107689 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382848_at BM383972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383972 /DB_XREF=gi:18184025 /DB_XREF=UI-R-DM1-ckc-m-07-0-UI.s1 /CLONE=UI-R-DM1-ckc-m-07-0-UI /FEA=EST /CNT=2 /TID=Rn.81379.1 /TIER=ConsEnd /STK=1 /UG=Rn.81379 /UG_TITLE=ESTs BM383972 1382849_at AA893195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893195 /DB_XREF=gi:3020074 /DB_XREF=EST196998 /CLONE=RKIBD39 /FEA=EST /CNT=2 /TID=Rn.13481.1 /TIER=ConsEnd /STK=1 /UG=Rn.13481 /UG_TITLE=ESTs AA893195 1382850_at BI295795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295795 /DB_XREF=gi:14959600 /DB_XREF=UI-R-DK0-cfa-g-02-0-UI.s1 /CLONE=UI-R-DK0-cfa-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.79760.1 /TIER=ConsEnd /STK=1 /UG=Rn.79760 /UG_TITLE=ESTs BI295795 synapsin II Syn2 29179 NM_001034020 /// NM_019159 0007269 // neurotransmitter secretion // not recorded /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0046928 // regulation of neurotransmitter secretion // traceable author statement 0008021 // synaptic vesicle // inferred from direct assay /// 0008021 // synaptic vesicle // traceable author statement /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // traceable author statement 1382851_at BE112084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112084 /DB_XREF=gi:8504189 /DB_XREF=UI-R-BJ1-avk-e-03-0-UI.s1 /CLONE=UI-R-BJ1-avk-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.52051.1 /TIER=ConsEnd /STK=1 /UG=Rn.52051 /UG_TITLE=ESTs BE112084 1382852_at BG666298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666298 /DB_XREF=gi:13888220 /DB_XREF=DRABSF04 /CLONE=DRABSF04 /FEA=EST /CNT=2 /TID=Rn.76539.1 /TIER=ConsEnd /STK=1 /UG=Rn.76539 /UG_TITLE=ESTs BG666298 ring finger protein 190 Rnf190 303596 NM_001013973 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382853_at AW915066 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915066 /DB_XREF=gi:8080751 /DB_XREF=EST346370 /CLONE=RGIBO75 /FEA=EST /CNT=2 /TID=Rn.63174.1 /TIER=ConsEnd /STK=1 /UG=Rn.63174 /UG_TITLE=ESTs AW915066 similar to RING finger protein 11 (NEDD4 WW domain-binding protein 2) (Sid 1669) LOC683844 683844 XM_001067720 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1382854_at AI232286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232286 /DB_XREF=gi:3816166 /DB_XREF=EST228974 /CLONE=RKIBZ75 /FEA=EST /CNT=2 /TID=Rn.21880.1 /TIER=ConsEnd /STK=1 /UG=Rn.21880 /UG_TITLE=ESTs AI232286 1382855_at BI295963 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295963 /DB_XREF=gi:14959934 /DB_XREF=UI-R-DK0-cfc-g-10-0-UI.s1 /CLONE=UI-R-DK0-cfc-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.48144.2 /TIER=ConsEnd /STK=1 /UG=Rn.48144 /UG_TITLE=ESTs, Weakly similar to 1917150A collagen:SUBUNIT=alpha1:ISOTYPE=VIII (R.norvegicus) BI295963 similar to Protein C20orf158 RGD1305899 311715 XM_001058977 /// XM_002729260 0005634 // nucleus // inferred from electronic annotation 0030528 // transcription regulator activity // inferred from electronic annotation 1382856_at BI295313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295313 /DB_XREF=gi:14958637 /DB_XREF=UI-R-DK0-cep-f-12-0-UI.s1 /CLONE=UI-R-DK0-cep-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.61651.1 /TIER=ConsEnd /STK=1 /UG=Rn.61651 /UG_TITLE=ESTs, Weakly similar to YN8A_YEAST HYPOTHETICAL 32.2 KD PROTEIN IN ARE2-SWP73 INTERGENIC REGION (S.cerevisiae) BI295313 XRCC6 binding protein 1 Xrcc6bp1 299828 NM_001134466 1382857_at BE108794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108794 /DB_XREF=gi:8500899 /DB_XREF=UI-R-BS1-ayy-e-05-0-UI.s1 /CLONE=UI-R-BS1-ayy-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.49270.1 /TIER=ConsEnd /STK=1 /UG=Rn.49270 /UG_TITLE=ESTs, Weakly similar to A60716 somatotropin intron-related protein RDE.25 - rat (R.norvegicus) BE108794 1382858_at BF397529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397529 /DB_XREF=gi:11382512 /DB_XREF=UI-R-BS2-bez-e-09-0-UI.s1 /CLONE=UI-R-BS2-bez-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.65299.1 /TIER=ConsEnd /STK=1 /UG=Rn.65299 /UG_TITLE=ESTs BF397529 G protein-coupled receptor 180 Gpr180 306165 NM_001006994 0004872 // receptor activity // inferred from electronic annotation 1382859_at AI043754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043754 /DB_XREF=gi:3290489 /DB_XREF=UI-R-C0-jm-b-07-0-UI.s1 /CLONE=UI-R-C0-jm-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.21680.1 /TIER=ConsEnd /STK=1 /UG=Rn.21680 /UG_TITLE=ESTs, Weakly similar to T12518 hypothetical protein DKFZp434D193.1 (H.sapiens) AI043754 RAP1 interacting factor homolog (yeast) Rif1 295602 XM_001065608 /// XM_215736 0019827 // stem cell maintenance // not recorded 0000781 // chromosome, telomeric region // not recorded /// 0001939 // female pronucleus // not recorded /// 0001940 // male pronucleus // not recorded /// 0005634 // nucleus // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382860_at AI231197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231197 /DB_XREF=gi:3815077 /DB_XREF=EST227885 /CLONE=REMDH05 /FEA=EST /CNT=2 /TID=Rn.24558.1 /TIER=ConsEnd /STK=1 /UG=Rn.24558 /UG_TITLE=ESTs AI231197 1382861_at AA997486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997486 /DB_XREF=gi:4283954 /DB_XREF=UI-R-C0-hl-h-08-0-UI.s1 /CLONE=UI-R-C0-hl-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.23283.2 /TIER=ConsEnd /STK=1 /UG=Rn.23283 /UG_TITLE=ESTs AA997486 transcription elongation factor A (SII) 1 Tcea1 362479 NM_001025735 0006350 // transcription // inferred from electronic annotation /// 0006354 // RNA elongation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003711 // transcription elongation regulator activity // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382862_at BE119506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119506 /DB_XREF=gi:8511575 /DB_XREF=UI-R-CA0-bae-b-04-0-UI.s1 /CLONE=UI-R-CA0-bae-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.53861.1 /TIER=ConsEnd /STK=1 /UG=Rn.53861 /UG_TITLE=ESTs, Weakly similar to S26689 hypothetical protein hc1 - mouse (M.musculus) BE119506 ash1 (absent, small, or homeotic)-like (Drosophila) Ash1l 310638 NM_001107689 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382863_at BI288162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288162 /DB_XREF=gi:14944474 /DB_XREF=UI-R-DK0-cdc-f-06-0-UI.s1 /CLONE=UI-R-DK0-cdc-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.78860.1 /TIER=ConsEnd /STK=1 /UG=Rn.78860 /UG_TITLE=ESTs BI288162 1382864_at AI231808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231808 /DB_XREF=gi:3815688 /DB_XREF=EST228496 /CLONE=RHECO53 /FEA=EST /CNT=2 /TID=Rn.24602.2 /TIER=ConsEnd /STK=1 /UG=Rn.24602 /UG_TITLE=ESTs AI231808 palmdelphin Palmd 310811 NM_001025688 0008360 // regulation of cell shape // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1382865_at BM390858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390858 /DB_XREF=gi:18190911 /DB_XREF=UI-R-CN1-cjp-a-05-0-UI.s1 /CLONE=UI-R-CN1-cjp-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.50056.1 /TIER=ConsEnd /STK=1 /UG=Rn.50056 /UG_TITLE=ESTs BM390858 testis specific, 14 Tsga14 500069 NM_001025770 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // not recorded /// 0005829 // cytosol // not recorded /// 0015030 // Cajal body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1382866_at BI285368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285368 /DB_XREF=gi:14938934 /DB_XREF=UI-R-DB0-byz-c-06-0-UI.s1 /CLONE=UI-R-DB0-byz-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.78567.1 /TIER=ConsEnd /STK=1 /UG=Rn.78567 /UG_TITLE=ESTs BI285368 glutamyl-tRNA(Gln) amidotransferase, subunit C homolog (bacterial) Gatc 360821 NM_001108339 0006450 // regulation of translational fidelity // inferred from electronic annotation 0005739 // mitochondrion // not recorded 1382867_at AA849390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849390 /DB_XREF=gi:2936930 /DB_XREF=EST192157 /CLONE=RMUAE22 /FEA=EST /CNT=2 /TID=Rn.6458.1 /TIER=ConsEnd /STK=1 /UG=Rn.6458 /UG_TITLE=ESTs AA849390 1382868_at BM387083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387083 /DB_XREF=gi:18187136 /DB_XREF=UI-R-CN1-cji-i-20-0-UI.s1 /CLONE=UI-R-CN1-cji-i-20-0-UI /FEA=EST /CNT=2 /TID=Rn.15236.1 /TIER=ConsEnd /STK=1 /UG=Rn.15236 /UG_TITLE=ESTs BM387083 0007275 // multicellular organismal development // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1382869_at BF419182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419182 /DB_XREF=gi:11407134 /DB_XREF=UI-R-BJ2-bqo-b-01-0-UI.s1 /CLONE=UI-R-BJ2-bqo-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.63995.1 /TIER=ConsEnd /STK=1 /UG=Rn.63995 /UG_TITLE=ESTs BF419182 2-aminoethanethiol (cysteamine) dioxygenase Ado 309732 NM_001107626 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0047800 // cysteamine dioxygenase activity // inferred from electronic annotation 1382870_at AI103536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103536 /DB_XREF=gi:3708070 /DB_XREF=EST212825 /CLONE=REMCD19 /FEA=EST /CNT=2 /TID=Rn.65816.1 /TIER=ConsEnd /STK=1 /UG=Rn.65816 /UG_TITLE=ESTs AI103536 1382871_at BE105552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105552 /DB_XREF=gi:8497654 /DB_XREF=UI-R-BX0-ash-b-06-0-UI.s1 /CLONE=UI-R-BX0-ash-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.50793.1 /TIER=ConsEnd /STK=1 /UG=Rn.50793 /UG_TITLE=ESTs BE105552 1382872_at AA851616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851616 /DB_XREF=gi:2939156 /DB_XREF=EST194384 /CLONE=RPLAJ63 /FEA=EST /CNT=2 /TID=Rn.65153.1 /TIER=ConsEnd /STK=1 /UG=Rn.65153 /UG_TITLE=ESTs AA851616 1382873_at BF414250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414250 /DB_XREF=gi:11402239 /DB_XREF=UI-R-BJ2-boo-b-10-0-UI.s1 /CLONE=UI-R-BJ2-boo-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.32679.1 /TIER=ConsEnd /STK=1 /UG=Rn.32679 /UG_TITLE=ESTs BF414250 CTTNBP2 N-terminal like Cttnbp2nl 310760 NM_001107712 0015629 // actin cytoskeleton // not recorded 0005515 // protein binding // not recorded 1382874_at BI289407 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289407 /DB_XREF=gi:14946946 /DB_XREF=UI-R-DK0-cfg-f-01-0-UI.s1 /CLONE=UI-R-DK0-cfg-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.9107.1 /TIER=ConsEnd /STK=1 /UG=Rn.9107 /UG_TITLE=ESTs BI289407 N-acetylneuraminate pyruvate lyase Npl 304860 NM_001013984 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008747 // N-acetylneuraminate lyase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation 1382875_at BF386519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386519 /DB_XREF=gi:11371308 /DB_XREF=UI-R-CA1-bbe-a-07-0-UI.s1 /CLONE=UI-R-CA1-bbe-a-07-0-UI /FEA=EST /CNT=2 /TID=Rn.82641.1 /TIER=ConsEnd /STK=1 /UG=Rn.82641 /UG_TITLE=ESTs BF386519 Family with sequence similarity 120B Fam120b 308218 NM_001107466 0005515 // protein binding // not recorded 1382876_at AA892377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892377 /DB_XREF=gi:3019256 /DB_XREF=EST196180 /CLONE=RKIAP69 /FEA=EST /CNT=2 /TID=Rn.65689.1 /TIER=ConsEnd /STK=1 /UG=Rn.65689 /UG_TITLE=ESTs AA892377 1382877_at AW525179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525179 /DB_XREF=gi:7167564 /DB_XREF=UI-R-BJ0p-aio-f-12-0-UI.s1 /CLONE=UI-R-BJ0p-aio-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.76220.1 /TIER=ConsEnd /STK=1 /UG=Rn.76220 /UG_TITLE=ESTs AW525179 DEAH (Asp-Glu-Ala-His) box polypeptide 35 Dhx35 362260 NM_001108601 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1382878_at AI716896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716896 /DB_XREF=gi:5034152 /DB_XREF=UI-R-Y0-aci-d-11-0-UI.s1 /CLONE=UI-R-Y0-aci-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.44835.1 /TIER=ConsEnd /STK=1 /UG=Rn.44835 /UG_TITLE=ESTs AI716896 Secreted frizzled-related protein 1 Sfrp1 84402 XM_001072532 /// XM_224987 0001649 // osteoblast differentiation // inferred from expression pattern /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001756 // somitogenesis // not recorded /// 0001843 // neural tube closure // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008584 // male gonad development // not recorded /// 0008585 // female gonad development // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // not recorded /// 0014034 // neural crest cell fate commitment // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0021915 // neural tube development // not recorded /// 0030097 // hemopoiesis // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from direct assay /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // traceable author statement /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030278 // regulation of ossification // inferred from mutant phenotype /// 0030279 // negative regulation of ossification // not recorded /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0033689 // negative regulation of osteoblast proliferation // not recorded /// 0035019 // somatic stem cell maintenance // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043508 // negative regulation of JUN kinase activity // inferred from electronic annotation /// 0043508 // negative regulation of JUN kinase activity // not recorded /// 0045600 // positive regulation of fat cell differentiation // not recorded /// 0045668 // negative regulation of osteoblast differentiation // not recorded /// 0045671 // negative regulation of osteoclast differentiation // inferred from mutant phenotype /// 0045671 // negative regulation of osteoclast differentiation // not recorded /// 0046546 // development of primary male sexual characteristics // not recorded /// 0048147 // negative regulation of fibroblast proliferation // not recorded /// 0048546 // digestive tract morphogenesis // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060071 // Wnt receptor signaling pathway, planar cell polarity pathway // inferred from electronic annotation /// 0060071 // Wnt receptor signaling pathway, planar cell polarity pathway // not recorded /// 0060346 // bone trabecula formation // not recorded /// 0060527 // prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis // inferred from electronic annotation /// 0060527 // prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis // not recorded /// 0060687 // regulation of branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0060687 // regulation of branching involved in prostate gland morphogenesis // not recorded /// 0071380 // cellular response to prostaglandin E stimulus // inferred from expression pattern /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // inferred from direct assay /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0090175 // regulation of establishment of planar polarity // not recorded /// 0090175 // regulation of establishment of planar polarity // inferred from electronic annotation /// 0090246 // convergent extension involved in somitogenesis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0005109 // frizzled binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017147 // Wnt-protein binding // inferred from electronic annotation /// 0017147 // Wnt-protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1382879_at AA874815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA874815 /DB_XREF=gi:4230698 /DB_XREF=UI-R-E0-bw-h-09-0-UI.s1 /CLONE=UI-R-E0-bw-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.42239.1 /TIER=ConsEnd /STK=1 /UG=Rn.42239 /UG_TITLE=ESTs AA874815 Eukaryotic translation initiation factor 2C, 1 Eif2c1 313594 NM_001191765 /// XM_001058138 /// XM_233544 0000956 // nuclear-transcribed mRNA catabolic process // not recorded /// 0035278 // negative regulation of translation involved in gene silencing by miRNA // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382880_at AI235339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235339 /DB_XREF=gi:3828845 /DB_XREF=EST231901 /CLONE=ROVCQ58 /FEA=EST /CNT=2 /TID=Rn.25318.1 /TIER=ConsEnd /STK=1 /UG=Rn.25318 /UG_TITLE=ESTs, Weakly similar to ATP-binding cassette, sub-family F, member 2 (Homo sapiens) (H.sapiens) AI235339 1382881_at BI290218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290218 /DB_XREF=gi:14948588 /DB_XREF=UI-R-DK0-cft-f-05-0-UI.s1 /CLONE=UI-R-DK0-cft-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.76083.1 /TIER=ConsEnd /STK=1 /UG=Rn.76083 /UG_TITLE=ESTs, Weakly similar to HUD RAT PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD HOMOLOG (R.norvegicus) BI290218 ribonucleoprotein, PTB-binding 1 Raver1 298705 NM_001013939 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382882_x_at AA963228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963228 /DB_XREF=gi:4278152 /DB_XREF=UI-R-E1-gj-c-08-0-UI.s1 /CLONE=UI-R-E1-gj-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.32477.1 /TIER=ConsEnd /STK=1 /UG=Rn.32477 /UG_TITLE=ESTs AA963228 1382883_at AI071492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071492 /DB_XREF=gi:3397707 /DB_XREF=UI-R-C2-nc-d-01-0-UI.s1 /CLONE=UI-R-C2-nc-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.21941.1 /TIER=ConsEnd /STK=1 /UG=Rn.21941 /UG_TITLE=ESTs AI071492 1382884_at AI009813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009813 /DB_XREF=gi:3223645 /DB_XREF=EST204264 /CLONE=RLUBO77 /FEA=EST /CNT=2 /TID=Rn.34987.1 /TIER=ConsEnd /STK=1 /UG=Rn.34987 /UG_TITLE=ESTs AI009813 1382885_at AW534013 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534013 /DB_XREF=gi:7176427 /DB_XREF=UI-R-C4-alr-h-10-0-UI.s1 /CLONE=UI-R-C4-alr-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.46878.1 /TIER=ConsEnd /STK=1 /UG=Rn.46878 /UG_TITLE=ESTs AW534013 early B-cell factor 4-like LOC100365419 100365419 XM_002726179 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382886_at BE100329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100329 /DB_XREF=gi:8492219 /DB_XREF=UI-R-BJ1-att-c-05-0-UI.s1 /CLONE=UI-R-BJ1-att-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.6601.1 /TIER=ConsEnd /STK=1 /UG=Rn.6601 /UG_TITLE=ESTs, Weakly similar to T13929 probable transcription regulator dre4 - fruit fly (D.melanogaster) BE100329 1382887_at AA957288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957288 /DB_XREF=gi:4277178 /DB_XREF=UI-R-E1-fq-g-11-0-UI.s1 /CLONE=UI-R-E1-fq-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.23151.1 /TIER=ConsEnd /STK=1 /UG=Rn.23151 /UG_TITLE=ESTs AA957288 Acyl-CoA synthetase long-chain family member 1 Acsl1 25288 NM_012820 0006629 // lipid metabolic process // traceable author statement /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from mutant phenotype /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from genetic interaction /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0015908 // fatty acid transport // inferred from genetic interaction /// 0034201 // response to oleic acid // inferred from expression pattern /// 0042178 // xenobiotic catabolic process // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0046320 // regulation of fatty acid oxidation // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003987 // acetate-CoA ligase activity // traceable author statement /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from direct assay /// 0004467 // long-chain fatty acid-CoA ligase activity // not recorded /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1382888_at AA858981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858981 /DB_XREF=gi:4229253 /DB_XREF=UI-R-A0-bi-a-09-0-UI.s1 /CLONE=UI-R-A0-bi-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.16935.1 /TIER=ConsEnd /STK=1 /UG=Rn.16935 /UG_TITLE=ESTs AA858981 1382889_s_at AW921174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921174 /DB_XREF=gi:8086995 /DB_XREF=EST352478 /CLONE=RGIHP26 /FEA=EST /CNT=2 /TID=Rn.42266.1 /TIER=ConsEnd /STK=1 /UG=Rn.42266 /UG_TITLE=ESTs, Weakly similar to A54879 pregnancy-specific glycoprotein rnCGM3 - rat (R.norvegicus) AW921174 pregnancy-specific beta 1-glycoprotein Psgb1 59313 NM_021677 0007565 // female pregnancy // inferred from electronic annotation 1382890_at BF409134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409134 /DB_XREF=gi:11397109 /DB_XREF=UI-R-BT1-bkm-d-07-0-UI.s1 /CLONE=UI-R-BT1-bkm-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.51524.1 /TIER=ConsEnd /STK=1 /UG=Rn.51524 /UG_TITLE=ESTs BF409134 1382891_at BE108241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108241 /DB_XREF=gi:8500346 /DB_XREF=UI-R-BS1-ayx-a-06-0-UI.s1 /CLONE=UI-R-BS1-ayx-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.61758.1 /TIER=ConsEnd /STK=1 /UG=Rn.61758 /UG_TITLE=ESTs BE108241 Ubiquitin specific peptidase 27, X-linked Usp27x 302566 XR_008155 /// XR_086363 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation 1382892_a_at AI171375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171375 /DB_XREF=gi:3711415 /DB_XREF=EST217331 /CLONE=RMUBJ89 /FEA=EST /CNT=2 /TID=Rn.8316.2 /TIER=ConsEnd /STK=1 /UG=Rn.8316 /UG_TITLE=ESTs AI171375 cysteine and histidine rich 1 LOC100362155 100362155 XM_002726920 /// XM_002729828 0016567 // protein ubiquitination // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382893_at BE101372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101372 /DB_XREF=gi:8493286 /DB_XREF=UI-R-BJ1-aud-c-07-0-UI.s1 /CLONE=UI-R-BJ1-aud-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.50054.1 /TIER=ConsEnd /STK=1 /UG=Rn.50054 /UG_TITLE=ESTs BE101372 nucleolar and coiled-body phosphoprotein 1 Nolc1 64896 NM_022869 0006970 // response to osmotic stress // inferred from expression pattern /// 0007000 // nucleolus organization // inferred from electronic annotation /// 0007000 // nucleolus organization // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from genetic interaction /// 0033979 // box H/ACA snoRNA metabolic process // inferred from genetic interaction /// 0042306 // regulation of protein import into nucleus // inferred from direct assay /// 0045941 // positive regulation of transcription // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0015030 // Cajal body // inferred from electronic annotation /// 0015030 // Cajal body // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008139 // nuclear localization sequence binding // inferred from direct assay /// 0034512 // box C/D snoRNA binding // inferred from direct assay /// 0034513 // box H/ACA snoRNA binding // inferred from direct assay 1382894_at BF415011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415011 /DB_XREF=gi:11403000 /DB_XREF=UI-R-BJ2-boy-f-06-0-UI.s1 /CLONE=UI-R-BJ2-boy-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.38959.1 /TIER=ConsEnd /STK=1 /UG=Rn.38959 /UG_TITLE=ESTs BF415011 1382895_at AI044640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044640 /DB_XREF=gi:3291501 /DB_XREF=UI-R-C1-jx-b-08-0-UI.s1 /CLONE=UI-R-C1-jx-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.20785.1 /TIER=ConsEnd /STK=1 /UG=Rn.20785 /UG_TITLE=ESTs, Weakly similar to NED4 MOUSE NEDD-4 PROTEIN (M.musculus) AI044640 1382896_at BI291999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291999 /DB_XREF=gi:14952070 /DB_XREF=UI-R-DN0-civ-n-19-0-UI.s1 /CLONE=UI-R-DN0-civ-n-19-0-UI /FEA=EST /CNT=2 /TID=Rn.43968.1 /TIER=ConsEnd /STK=1 /UG=Rn.43968 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) BI291999 1382897_at BF393872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393872 /DB_XREF=gi:11378735 /DB_XREF=UI-R-CA0-bgw-a-04-0-UI.s1 /CLONE=UI-R-CA0-bgw-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.63814.1 /TIER=ConsEnd /STK=1 /UG=Rn.63814 /UG_TITLE=ESTs BF393872 similar to mKIAA1461 protein LOC311026 311026 XR_007266 /// XR_009624 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1382898_at BG376849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376849 /DB_XREF=gi:13301321 /DB_XREF=UI-R-CA1-blh-h-11-0-UI.s1 /CLONE=UI-R-CA1-blh-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.66436.1 /TIER=ConsEnd /STK=1 /UG=Rn.66436 /UG_TITLE=ESTs BG376849 1382899_at AI409173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409173 /DB_XREF=gi:4252677 /DB_XREF=EST237465 /CLONE=RKIDR27 /FEA=EST /CNT=2 /TID=Rn.49020.1 /TIER=ConsEnd /STK=1 /UG=Rn.49020 /UG_TITLE=ESTs AI409173 SLC2A4 regulator-like LOC100363855 100363855 XR_085803 1382900_at BF566547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF566547 /DB_XREF=gi:11676277 /DB_XREF=UI-R-BO0-agm-h-07-0-UI.r1 /CLONE=UI-R-BO0-agm-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.80859.1 /TIER=ConsEnd /STK=1 /UG=Rn.80859 /UG_TITLE=ESTs BF566547 1382901_at AW532478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532478 /DB_XREF=gi:7174892 /DB_XREF=UI-R-BS0-ami-b-06-0-UI.s1 /CLONE=UI-R-BS0-ami-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.47963.1 /TIER=ConsEnd /STK=1 /UG=Rn.47963 /UG_TITLE=ESTs, Moderately similar to GFI1 RAT ZINC FINGER PROTEIN GFI-1 (R.norvegicus) AW532478 growth factor independent 1B transcription repressor Gfi1b 311832 NM_001107823 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1382902_at AA943147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943147 /DB_XREF=gi:3103063 /DB_XREF=EST198646 /CLONE=RBRAF61 /FEA=EST /CNT=2 /TID=Rn.7512.1 /TIER=ConsEnd /STK=1 /UG=Rn.7512 /UG_TITLE=ESTs AA943147 hect domain and RLD 6 Herc6 362376 XM_001064216 /// XM_342700 0006464 // protein modification process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1382903_at BF420492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420492 /DB_XREF=gi:11408481 /DB_XREF=UI-R-BJ2-bpw-f-05-0-UI.s1 /CLONE=UI-R-BJ2-bpw-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.63722.1 /TIER=ConsEnd /STK=1 /UG=Rn.63722 /UG_TITLE=ESTs BF420492 zinc finger, ZZ-type containing 3 Zzz3 310958 NM_001134549 1382904_at BF397274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397274 /DB_XREF=gi:11382257 /DB_XREF=UI-R-BS2-bek-d-11-0-UI.s1 /CLONE=UI-R-BS2-bek-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.70772.1 /TIER=ConsEnd /STK=1 /UG=Rn.70772 /UG_TITLE=ESTs, Weakly similar to A55817 cyclin-dependent kinase p130-PITSLRE - mouse (M.musculus) BF397274 coiled-coil domain containing 55 Ccdc55 303346 NM_001037189 0016607 // nuclear speck // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded 1382905_at AI102514 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102514 /DB_XREF=gi:3707277 /DB_XREF=EST211803 /CLONE=REMBO64 /FEA=EST /CNT=2 /TID=Rn.23909.1 /TIER=ConsEnd /STK=1 /UG=Rn.23909 /UG_TITLE=ESTs AI102514 1382906_at BI288264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288264 /DB_XREF=gi:14944680 /DB_XREF=UI-R-DK0-ccy-h-04-0-UI.s1 /CLONE=UI-R-DK0-ccy-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.8063.1 /TIER=ConsEnd /STK=1 /UG=Rn.8063 /UG_TITLE=ESTs BI288264 similar to melanoma antigen family A, 10 MGC114529 317590 NM_001025713 1382907_at BI289723 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289723 /DB_XREF=gi:14947596 /DB_XREF=UI-R-DK0-cfn-d-11-0-UI.s1 /CLONE=UI-R-DK0-cfn-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.43033.1 /TIER=ConsEnd /STK=1 /UG=Rn.43033 /UG_TITLE=ESTs, Weakly similar to T15196 hypothetical protein F55A12.9 - Caenorhabditis elegans (C.elegans) BI289723 similar to 4930431B09Rik protein LOC310721 310721 NM_001014041 1382908_at AI043909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043909 /DB_XREF=gi:3290644 /DB_XREF=UI-R-C0-jk-g-05-0-UI.s1 /CLONE=UI-R-C0-jk-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.21701.1 /TIER=ConsEnd /STK=1 /UG=Rn.21701 /UG_TITLE=ESTs, Highly similar to PT0183 protein-tyrosine kinase (R.norvegicus) AI043909 Eph receptor A4 Epha4 316539 NM_001162411 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007628 // adult walking behavior // not recorded 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005003 // ephrin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046875 // ephrin receptor binding // inferred from direct assay 1382909_at BM386062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386062 /DB_XREF=gi:18186115 /DB_XREF=UI-R-DN1-ckf-p-16-0-UI.s1 /CLONE=UI-R-DN1-ckf-p-16-0-UI /FEA=EST /CNT=2 /TID=Rn.81243.1 /TIER=ConsEnd /STK=1 /UG=Rn.81243 /UG_TITLE=ESTs BM386062 similar to RIKEN cDNA 2010012O05 RGD1311783 294012 NM_001134509 1382910_at AI072237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072237 /DB_XREF=gi:3398431 /DB_XREF=UI-R-C2-mu-e-06-0-UI.s1 /CLONE=UI-R-C2-mu-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.21745.1 /TIER=ConsEnd /STK=1 /UG=Rn.21745 /UG_TITLE=ESTs AI072237 1382911_at BE105150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105150 /DB_XREF=gi:8497251 /DB_XREF=UI-R-BX0-arz-a-10-0-UI.s1 /CLONE=UI-R-BX0-arz-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.25774.1 /TIER=ConsEnd /STK=1 /UG=Rn.25774 /UG_TITLE=ESTs BE105150 1382912_at BE103768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103768 /DB_XREF=gi:8495868 /DB_XREF=UI-R-BX0-arp-e-02-0-UI.s1 /CLONE=UI-R-BX0-arp-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.64954.1 /TIER=ConsEnd /STK=1 /UG=Rn.64954 /UG_TITLE=ESTs BE103768 ubiquitin specific peptidase 44 Usp44 314746 NM_001108083 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0016579 // protein deubiquitination // not recorded /// 0051322 // anaphase // not recorded /// 0060564 // negative regulation of mitotic anaphase-promoting complex activity // not recorded /// 0090231 // regulation of spindle checkpoint // not recorded 0005634 // nucleus // not recorded 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382913_at BE114076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114076 /DB_XREF=gi:8506181 /DB_XREF=UI-R-CA0-axn-g-11-0-UI.s1 /CLONE=UI-R-CA0-axn-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.16244.1 /TIER=ConsEnd /STK=1 /UG=Rn.16244 /UG_TITLE=ESTs BE114076 cortactin binding protein 2 Cttnbp2 282587 NM_001114401 0030036 // actin cytoskeleton organization // non-traceable author statement /// 0030036 // actin cytoskeleton organization // inferred from physical interaction 0015629 // actin cytoskeleton // inferred from physical interaction 0005515 // protein binding // inferred from direct assay /// 0005519 // cytoskeletal regulatory protein binding // inferred from physical interaction 1382914_at AA924097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924097 /DB_XREF=gi:4234189 /DB_XREF=UI-R-A1-du-h-06-0-UI.s1 /CLONE=UI-R-A1-du-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.15266.1 /TIER=ConsEnd /STK=1 /UG=Rn.15266 /UG_TITLE=ESTs AA924097 1382915_at AI237079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237079 /DB_XREF=gi:3830585 /DB_XREF=EST233641 /CLONE=ROVDO44 /FEA=EST /CNT=2 /TID=Rn.15945.2 /TIER=ConsEnd /STK=1 /UG=Rn.15945 /UG_TITLE=ESTs AI237079 1382916_at AI179520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179520 /DB_XREF=gi:3730158 /DB_XREF=EST223239 /CLONE=RSPCI48 /FEA=EST /CNT=2 /TID=Rn.55900.1 /TIER=ConsEnd /STK=1 /UG=Rn.55900 /UG_TITLE=ESTs AI179520 1382917_at AI043869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043869 /DB_XREF=gi:3290604 /DB_XREF=UI-R-C0-jm-h-04-0-UI.s1 /CLONE=UI-R-C0-jm-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.65815.1 /TIER=ConsEnd /STK=1 /UG=Rn.65815 /UG_TITLE=ESTs AI043869 1382918_at AA956561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956561 /DB_XREF=gi:4239035 /DB_XREF=UI-R-E1-fk-a-06-0-UI.s1 /CLONE=UI-R-E1-fk-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.8626.1 /TIER=ConsEnd /STK=1 /UG=Rn.8626 /UG_TITLE=ESTs AA956561 Similar to MIR-interacting saposin-like protein precursor (Transmembrane protein 4) (Putative secreted protein ZSIG9) LOC685001 685001 XM_001061855 1382919_at BI294340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294340 /DB_XREF=gi:14956710 /DB_XREF=UI-R-DK0-ceh-f-02-0-UI.s1 /CLONE=UI-R-DK0-ceh-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.79570.1 /TIER=ConsEnd /STK=1 /UG=Rn.79570 /UG_TITLE=ESTs BI294340 solute carrier family 39 (zinc transporter), member 14 Slc39a14 306009 NM_001107275 0006826 // iron ion transport // not recorded /// 0006829 // zinc ion transport // not recorded /// 0015684 // ferrous iron transport // not recorded /// 0030001 // metal ion transport // inferred from electronic annotation /// 0034755 // iron ion transmembrane transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0071577 // zinc ion transmembrane transport // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005385 // zinc ion transmembrane transporter activity // not recorded /// 0015093 // ferrous iron transmembrane transporter activity // not recorded /// 0046873 // metal ion transmembrane transporter activity // inferred from electronic annotation 1382920_at AA875002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875002 /DB_XREF=gi:4230884 /DB_XREF=UI-R-E0-cb-a-11-0-UI.s1 /CLONE=UI-R-E0-cb-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.23981.1 /TIER=ConsEnd /STK=1 /UG=Rn.23981 /UG_TITLE=ESTs AA875002 leucine rich repeat containing 8 family, member A Lrrc8a 311846 NM_001024782 0002329 // pre-B cell differentiation // not recorded /// 0002329 // pre-B cell differentiation // inferred from sequence or structural similarity /// 0002329 // pre-B cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1382921_at AA997613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997613 /DB_XREF=gi:4284962 /DB_XREF=UI-R-C0-hy-g-08-0-UI.s1 /CLONE=UI-R-C0-hy-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.12755.1 /TIER=ConsEnd /STK=1 /UG=Rn.12755 /UG_TITLE=ESTs, Weakly similar to S64571 probable membrane protein YGR245c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AA997613 SDA1 domain containing 1 Sdad1 289504 NM_001006958 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382922_at BG375109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375109 /DB_XREF=gi:13299581 /DB_XREF=UI-R-CV1-bsx-c-01-0-UI.s1 /CLONE=UI-R-CV1-bsx-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.7472.2 /TIER=ConsEnd /STK=1 /UG=Rn.7472 /UG_TITLE=ESTs BG375109 Poly(A) binding protein, nuclear 1 Pabpn1 116697 NM_001135008 0008380 // RNA splicing // not recorded /// 0016973 // poly(A)+ mRNA export from nucleus // inferred from electronic annotation /// 0016973 // poly(A)+ mRNA export from nucleus // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382923_at AI072424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072424 /DB_XREF=gi:3398618 /DB_XREF=UI-R-C2-nk-a-04-0-UI.s1 /CLONE=UI-R-C2-nk-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.20151.1 /TIER=ConsEnd /STK=1 /UG=Rn.20151 /UG_TITLE=ESTs AI072424 synaptotagmin binding, cytoplasmic RNA interacting protein Syncrip 363113 NM_001047916 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0070934 // CRD-mediated mRNA stabilization // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070937 // CRD-mediated mRNA stability complex // not recorded /// 0070937 // CRD-mediated mRNA stability complex // inferred from sequence or structural similarity /// 0071204 // histone pre-mRNA 3'end processing complex // not recorded /// 0071204 // histone pre-mRNA 3'end processing complex // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008143 // poly(A) RNA binding // not recorded 1382924_at AA850195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850195 /DB_XREF=gi:2937735 /DB_XREF=EST192962 /CLONE=ROVAD76 /FEA=EST /CNT=2 /TID=Rn.6581.1 /TIER=ConsEnd /STK=1 /UG=Rn.6581 /UG_TITLE=ESTs AA850195 pantothenate kinase 1 Pank1 294088 NM_001106373 0015937 // coenzyme A biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded 0005829 // cytosol // not recorded 0004594 // pantothenate kinase activity // inferred from electronic annotation /// 0004594 // pantothenate kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1382925_at BF287720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287720 /DB_XREF=gi:11218790 /DB_XREF=EST452311 /CLONE=RGIGJ14 /FEA=EST /CNT=2 /TID=Rn.17891.1 /TIER=ConsEnd /STK=1 /UG=Rn.17891 /UG_TITLE=ESTs BF287720 1382926_s_at BF287720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287720 /DB_XREF=gi:11218790 /DB_XREF=EST452311 /CLONE=RGIGJ14 /FEA=EST /CNT=2 /TID=Rn.17891.1 /TIER=ConsEnd /STK=1 /UG=Rn.17891 /UG_TITLE=ESTs BF287720 1382927_at BF282080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282080 /DB_XREF=gi:11213150 /DB_XREF=EST446671 /CLONE=RGIDB50 /FEA=EST /CNT=2 /TID=Rn.13682.2 /TIER=ConsEnd /STK=1 /UG=Rn.13682 /UG_TITLE=ESTs BF282080 hypothetical protein LOC308990 LOC308990 308990 NM_001025001 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1382928_at AI233682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233682 /DB_XREF=gi:3817562 /DB_XREF=EST230370 /CLONE=RKIDI82 /FEA=EST /CNT=2 /TID=Rn.54119.1 /TIER=ConsEnd /STK=1 /UG=Rn.54119 /UG_TITLE=ESTs AI233682 PDZ domain containing 3 Pdzd3 500986 NM_001191996 /// XM_001066511 /// XM_576397 0005624 // membrane fraction // not recorded /// 0005903 // brush border // not recorded /// 0035003 // subapical complex // not recorded /// 0045177 // apical part of cell // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0030251 // guanylate cyclase inhibitor activity // not recorded 1382929_at BF386243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386243 /DB_XREF=gi:11371067 /DB_XREF=UI-R-CA1-bbc-c-08-0-UI.s1 /CLONE=UI-R-CA1-bbc-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.22233.2 /TIER=ConsEnd /STK=1 /UG=Rn.22233 /UG_TITLE=ESTs BF386243 0016070 // RNA metabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1382930_at BE106754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106754 /DB_XREF=gi:8498856 /DB_XREF=UI-R-BO1-asr-g-08-0-UI.s1 /CLONE=UI-R-BO1-asr-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.51035.1 /TIER=ConsEnd /STK=1 /UG=Rn.51035 /UG_TITLE=ESTs BE106754 similar to hypothetical protein FLJ21127 RGD1566266 304486 NM_001177613 /// XR_009299 /// XR_085992 1382931_at AA924607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924607 /DB_XREF=gi:4235798 /DB_XREF=UI-R-A1-ea-g-07-0-UI.s1 /CLONE=UI-R-A1-ea-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.21466.1 /TIER=ConsEnd /STK=1 /UG=Rn.21466 /UG_TITLE=ESTs AA924607 1382932_at AI145291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145291 /DB_XREF=gi:3667090 /DB_XREF=UI-R-BT0-pq-c-07-0-UI.s1 /CLONE=UI-R-BT0-pq-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.27876.1 /TIER=ConsEnd /STK=1 /UG=Rn.27876 /UG_TITLE=ESTs AI145291 leucine rich repeat containing 50 Lrrc50 361419 NM_001014154 0060271 // cilium morphogenesis // not recorded /// 0060271 // cilium morphogenesis // inferred from sequence or structural similarity /// 0060271 // cilium morphogenesis // inferred from electronic annotation /// 0070286 // axonemal dynein complex assembly // inferred from electronic annotation /// 0070286 // axonemal dynein complex assembly // not recorded 0005929 // cilium // inferred from electronic annotation /// 0035085 // cilium axoneme // not recorded /// 0035085 // cilium axoneme // inferred from sequence or structural similarity /// 0035085 // cilium axoneme // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0045502 // dynein binding // not recorded /// 0045502 // dynein binding // inferred from sequence or structural similarity /// 0045502 // dynein binding // inferred from electronic annotation 1382933_at BE102157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102157 /DB_XREF=gi:8494256 /DB_XREF=UI-R-BT1-aqf-a-08-0-UI.s1 /CLONE=UI-R-BT1-aqf-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.68601.1 /TIER=ConsEnd /STK=1 /UG=Rn.68601 /UG_TITLE=ESTs BE102157 1382934_at AI136392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136392 /DB_XREF=gi:3637169 /DB_XREF=UI-R-C2p-od-e-07-0-UI.s1 /CLONE=UI-R-C2p-od-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.27116.1 /TIER=ConsEnd /STK=1 /UG=Rn.27116 /UG_TITLE=ESTs AI136392 Pannexin 1 Panx1 315435 NM_199397 0006812 // cation transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0007267 // cell-cell signaling // inferred from mutant phenotype /// 0033198 // response to ATP // inferred from electronic annotation /// 0033198 // response to ATP // not recorded /// 0050715 // positive regulation of cytokine secretion // inferred from electronic annotation /// 0050715 // positive regulation of cytokine secretion // not recorded /// 0050717 // positive regulation of interleukin-1 alpha secretion // inferred from electronic annotation /// 0050717 // positive regulation of interleukin-1 alpha secretion // not recorded /// 0050718 // positive regulation of interleukin-1 beta secretion // inferred from electronic annotation /// 0050718 // positive regulation of interleukin-1 beta secretion // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005921 // gap junction // inferred from mutant phenotype /// 0005921 // gap junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0032059 // bleb // inferred from electronic annotation /// 0032059 // bleb // not recorded 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005243 // gap junction channel activity // inferred from mutant phenotype /// 0046982 // protein heterodimerization activity // inferred from mutant phenotype 1382935_at BE113823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113823 /DB_XREF=gi:8505928 /DB_XREF=UI-R-BJ1-awh-g-12-0-UI.s1 /CLONE=UI-R-BJ1-awh-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.48831.1 /TIER=ConsEnd /STK=1 /UG=Rn.48831 /UG_TITLE=ESTs, Moderately similar to Y141_HUMAN HYPOTHETICAL PROTEIN KIAA0141 (H.sapiens) BE113823 SEL1 domain containing protein RGD735029 RGD735029 307480 NM_199493 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005488 // binding // inferred from electronic annotation 1382936_at BF396501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396501 /DB_XREF=gi:11381475 /DB_XREF=UI-R-BS2-bdy-h-04-0-UI.s1 /CLONE=UI-R-BS2-bdy-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.76241.1 /TIER=ConsEnd /STK=1 /UG=Rn.76241 /UG_TITLE=ESTs BF396501 1382937_at BE113837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113837 /DB_XREF=gi:8505942 /DB_XREF=UI-R-CA0-axe-a-03-0-UI.s1 /CLONE=UI-R-CA0-axe-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.52247.1 /TIER=ConsEnd /STK=1 /UG=Rn.52247 /UG_TITLE=ESTs BE113837 SAM pointed domain containing ets transcription factor Spdef 689210 NM_001109530 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1382938_at BF386757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386757 /DB_XREF=gi:11371581 /DB_XREF=UI-R-CA1-bbh-b-01-0-UI.s1 /CLONE=UI-R-CA1-bbh-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.56336.1 /TIER=ConsEnd /STK=1 /UG=Rn.56336 /UG_TITLE=ESTs BF386757 1382939_at BE118639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118639 /DB_XREF=gi:8510744 /DB_XREF=UI-R-BS1-azr-a-10-0-UI.s1 /CLONE=UI-R-BS1-azr-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.48825.1 /TIER=ConsEnd /STK=1 /UG=Rn.48825 /UG_TITLE=ESTs, Moderately similar to G01185 TPR protein (H.sapiens) BE118639 translocated promoter region Tpr 304862 NM_001107185 0006412 // translation // inferred from electronic annotation /// 0006434 // seryl-tRNA aminoacylation // inferred from electronic annotation /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0007094 // mitotic cell cycle spindle assembly checkpoint // not recorded 0000776 // kinetochore // not recorded /// 0005635 // nuclear envelope // not recorded /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005643 // nuclear pore // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004828 // serine-tRNA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1382940_at BI281084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281084 /DB_XREF=gi:14930471 /DB_XREF=UI-R-DD0-bzr-a-08-0-UI.s1 /CLONE=UI-R-DD0-bzr-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.78143.1 /TIER=ConsEnd /STK=1 /UG=Rn.78143 /UG_TITLE=ESTs BI281084 galactosidase, beta 1-like 2 Glb1l2 503194 NM_001192018 /// XM_001053731 /// XM_578717 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004565 // beta-galactosidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation 1382941_at BG371683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371683 /DB_XREF=gi:13268220 /DB_XREF=UI-R-BJ2-bpi-h-11-0-UI.s1 /CLONE=UI-R-BJ2-bpi-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.66859.1 /TIER=ConsEnd /STK=1 /UG=Rn.66859 /UG_TITLE=ESTs BG371683 leucine rich repeat containing 32 Lrrc32 293135 NM_001170434 /// XM_001065297 /// XM_002725696 /// XM_002728776 /// XM_218947 0005515 // protein binding // inferred from electronic annotation 1382942_at BF397627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397627 /DB_XREF=gi:11382611 /DB_XREF=UI-R-BS2-bfa-g-04-0-UI.s1 /CLONE=UI-R-BS2-bfa-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.25485.1 /TIER=ConsEnd /STK=1 /UG=Rn.25485 /UG_TITLE=ESTs BF397627 1382943_at BE097805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097805 /DB_XREF=gi:8488736 /DB_XREF=UI-R-BO1-aqb-h-09-0-UI.s1 /CLONE=UI-R-BO1-aqb-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.49697.1 /TIER=ConsEnd /STK=1 /UG=Rn.49697 /UG_TITLE=ESTs, Highly similar to protocadherin 2C (M.musculus) BE097805 protocadherin gamma subfamily A, 1 /// protocadherin gamma subfamily A, 10 /// protocadherin gamma subfamily A, 11 /// protocadherin gamma subfamily A, 12 /// protocadherin gamma subfamily A, 2 /// protocadherin gamma subfamily A, 3 /// protocadherin gamma subfamily A, 5 /// protocadherin gamma subfamily A, 7 /// protocadherin gamma subfamily A, 8 /// protocadherin gamma subfamily A, 9 /// protocadherin gamma subfamily B, 7 /// protocadherin gamma subfamily B, 8 /// protocadherin gamma subfamily C, 3 /// protocadherin gamma c5 Pcdhga1 /// Pcdhga10 /// Pcdhga11 /// Pcdhga12 /// Pcdhga2 /// Pcdhga3 /// Pcdhga5 /// Pcdhga7 /// Pcdhga8 /// Pcdhga9 /// Pcdhgb7 /// Pcdhgb8 /// Pcdhgc3 /// Pcdhgc5 116782 /// 252895 /// 252897 /// 291635 /// 291637 /// 364843 /// 364844 /// 364845 /// 498846 /// 498847 /// 498849 /// 498850 /// 553129 /// 641525 NM_001012215 /// NM_001014773 /// NM_001037135 /// NM_001037137 /// NM_001037139 /// NM_001037140 /// NM_001037153 /// NM_001037154 /// NM_001037156 /// NM_001037158 /// NM_001037159 /// NM_001037337 /// NM_001164288 /// NM_053943 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007283 // spermatogenesis // non-traceable author statement /// 0007283 // spermatogenesis // inferred from expression pattern 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1382944_at AA891161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891161 /DB_XREF=gi:4132028 /DB_XREF=EST194964 /CLONE=RHEAP94 /FEA=EST /CNT=2 /TID=Rn.7257.1 /TIER=ConsEnd /STK=1 /UG=Rn.7257 /UG_TITLE=ESTs AA891161 1382945_at AI028809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI028809 /DB_XREF=gi:4294209 /DB_XREF=UI-R-C0-ij-d-07-0-UI.s1 /CLONE=UI-R-C0-ij-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.17263.1 /TIER=ConsEnd /STK=1 /UG=Rn.17263 /UG_TITLE=ESTs AI028809 AIG2-like domain 1 A2ld1 290500 NM_001025634 0042219 // cellular amino acid derivative catabolic process // not recorded /// 0042219 // cellular amino acid derivative catabolic process // inferred from sequence or structural similarity /// 0042219 // cellular amino acid derivative catabolic process // inferred from electronic annotation 0003839 // gamma-glutamylcyclotransferase activity // not recorded /// 0003839 // gamma-glutamylcyclotransferase activity // inferred from sequence or structural similarity /// 0003839 // gamma-glutamylcyclotransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1382946_a_at AI711306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711306 /DB_XREF=gi:5001082 /DB_XREF=UI-R-AA1-zv-e-11-0-UI.s1 /CLONE=UI-R-AA1-zv-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.40785.1 /TIER=ConsEnd /STK=1 /UG=Rn.40785 /UG_TITLE=ESTs, Highly similar to S06147 GTP-binding protein rab1B - rat (R.norvegicus) AI711306 RAB1B, member RAS oncogene family Rab1b 100126191 NM_001109979 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1382947_at AI711306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711306 /DB_XREF=gi:5001082 /DB_XREF=UI-R-AA1-zv-e-11-0-UI.s1 /CLONE=UI-R-AA1-zv-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.40785.1 /TIER=ConsEnd /STK=1 /UG=Rn.40785 /UG_TITLE=ESTs, Highly similar to S06147 GTP-binding protein rab1B - rat (R.norvegicus) AI711306 RAB1B, member RAS oncogene family-like /// RAB1B, member RAS oncogene family LOC100363782 /// Rab1b 100126191 /// 100363782 NM_001109979 /// XM_002727597 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1382948_at BI296929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296929 /DB_XREF=gi:14961841 /DB_XREF=UI-R-DK0-cgj-c-01-0-UI.s1 /CLONE=UI-R-DK0-cgj-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.79852.1 /TIER=ConsEnd /STK=1 /UG=Rn.79852 /UG_TITLE=ESTs BI296929 Rho GTPase activating protein 28 Arhgap28 301709 NM_001191815 /// XM_001054365 /// XM_237535 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 1382949_at BM386727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386727 /DB_XREF=gi:18186780 /DB_XREF=UI-R-CN1-cjg-f-24-0-UI.s1 /CLONE=UI-R-CN1-cjg-f-24-0-UI /FEA=EST /CNT=2 /TID=Rn.81843.1 /TIER=ConsEnd /STK=1 /UG=Rn.81843 /UG_TITLE=ESTs BM386727 retinol dehydrogenase 12 (all-trans/9-cis/11-cis) Rdh12 314264 NM_001108037 0008152 // metabolic process // inferred from electronic annotation /// 0042572 // retinol metabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005622 // intracellular // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004745 // retinol dehydrogenase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1382950_at AA901350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901350 /DB_XREF=gi:4233851 /DB_XREF=UI-R-A1-dw-c-01-0-UI.s1 /CLONE=UI-R-A1-dw-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.15220.1 /TIER=ConsEnd /STK=1 /UG=Rn.15220 /UG_TITLE=ESTs AA901350 1382951_at AA957549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957549 /DB_XREF=gi:4277439 /DB_XREF=UI-R-E1-gf-f-01-0-UI.s1 /CLONE=UI-R-E1-gf-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.23913.1 /TIER=ConsEnd /STK=1 /UG=Rn.23913 /UG_TITLE=ESTs AA957549 1382952_at C06972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:C06972 /DB_XREF=gi:1503748 /DB_XREF=C06972 /FEA=EST /CNT=2 /TID=Rn.73705.1 /TIER=ConsEnd /STK=1 /UG=Rn.73705 /UG_TITLE=ESTs C06972 1382953_at AI043711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043711 /DB_XREF=gi:3290446 /DB_XREF=UI-R-C0-jl-h-06-0-UI.s1 /CLONE=UI-R-C0-jl-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.18699.1 /TIER=ConsEnd /STK=1 /UG=Rn.18699 /UG_TITLE=ESTs AI043711 1382954_at AI577630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577630 /DB_XREF=gi:4562006 /DB_XREF=UI-R-AB0-vr-c-09-0-UI.s1 /CLONE=UI-R-AB0-vr-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.6248.1 /TIER=ConsEnd /STK=1 /UG=Rn.6248 /UG_TITLE=ESTs AI577630 1382955_at BI284296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284296 /DB_XREF=gi:14936844 /DB_XREF=UI-R-CX0s-ccq-e-03-0-UI.s1 /CLONE=UI-R-CX0s-ccq-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.12737.1 /TIER=ConsEnd /STK=1 /UG=Rn.12737 /UG_TITLE=ESTs BI284296 G protein-coupled receptor 126 Gpr126 308376 XM_001071417 /// XM_218313 0007218 // neuropeptide signaling pathway // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1382956_at AA943750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943750 /DB_XREF=gi:3103666 /DB_XREF=EST199249 /CLONE=RBRAP21 /FEA=EST /CNT=2 /TID=Rn.7631.1 /TIER=ConsEnd /STK=1 /UG=Rn.7631 /UG_TITLE=ESTs AA943750 similar to RIKEN cDNA 4933406L09 LOC361016 361016 NM_001014137 1382957_at BF408881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408881 /DB_XREF=gi:11396856 /DB_XREF=UI-R-BS2-bet-e-01-0-UI.s1 /CLONE=UI-R-BS2-bet-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.53965.1 /TIER=ConsEnd /STK=1 /UG=Rn.53965 /UG_TITLE=ESTs, Weakly similar to YP68_CAEEL HYPOTHETICAL 37.0 KDA PROTEIN B0495.8 IN CHROMOSOME II (C.elegans) BF408881 LUC7-like 3 (S. cerevisiae) Luc7l3 360602 NM_001108291 0006915 // apoptosis // not recorded /// 0006950 // response to stress // not recorded /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // not recorded 0003729 // mRNA binding // not recorded /// 0005515 // protein binding // not recorded 1382958_at BI274605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274605 /DB_XREF=gi:14885665 /DB_XREF=UI-R-CW0-bwl-h-06-0-UI.s1 /CLONE=UI-R-CW0-bwl-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.68138.1 /TIER=ConsEnd /STK=1 /UG=Rn.68138 /UG_TITLE=ESTs BI274605 uncoupling protein 3 (mitochondrial, proton carrier) Ucp3 25708 NM_013167 0000303 // response to superoxide // inferred from direct assay /// 0000303 // response to superoxide // not recorded /// 0000303 // response to superoxide // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from direct assay /// 0001666 // response to hypoxia // inferred from expression pattern /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006839 // mitochondrial transport // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0009409 // response to cold // inferred from expression pattern /// 0014823 // response to activity // inferred from expression pattern /// 0015992 // proton transport // not recorded /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055085 // transmembrane transport // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0015078 // hydrogen ion transmembrane transporter activity // traceable author statement /// 0017077 // oxidative phosphorylation uncoupler activity // inferred from electronic annotation /// 0017077 // oxidative phosphorylation uncoupler activity // not recorded 1382959_at AA891058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891058 /DB_XREF=gi:4132006 /DB_XREF=EST194861 /CLONE=RHEAO48 /FEA=EST /CNT=2 /TID=Rn.19936.1 /TIER=ConsEnd /STK=1 /UG=Rn.19936 /UG_TITLE=ESTs AA891058 1382960_at BE108047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108047 /DB_XREF=gi:8500152 /DB_XREF=UI-R-CA0-awz-g-08-0-UI.s1 /CLONE=UI-R-CA0-awz-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.51395.1 /TIER=ConsEnd /STK=1 /UG=Rn.51395 /UG_TITLE=ESTs BE108047 1382961_at AI013305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013305 /DB_XREF=gi:3227361 /DB_XREF=EST207980 /CLONE=RSPBJ30 /FEA=EST /CNT=2 /TID=Rn.17988.1 /TIER=ConsEnd /STK=1 /UG=Rn.17988 /UG_TITLE=ESTs AI013305 1382962_at AA894167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894167 /DB_XREF=gi:3021046 /DB_XREF=EST197970 /CLONE=RSPAR87 /FEA=EST /CNT=2 /TID=Rn.14855.1 /TIER=ConsEnd /STK=1 /UG=Rn.14855 /UG_TITLE=ESTs AA894167 lysophosphatidic acid receptor 2 Lpar2 498609 NM_001109109 0000187 // activation of MAPK activity // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0035025 // positive regulation of Rho protein signal transduction // not recorded /// 0043410 // positive regulation of MAPKKK cascade // not recorded 0009986 // cell surface // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // not recorded 0001619 // lysosphingolipid and lysophosphatidic acid receptor activity // inferred from electronic annotation /// 0001619 // lysosphingolipid and lysophosphatidic acid receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0030165 // PDZ domain binding // not recorded /// 0030274 // LIM domain binding // not recorded 1382963_at BF416871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416871 /DB_XREF=gi:11404860 /DB_XREF=UI-R-CN0-bla-a-09-0-UI.s1 /CLONE=UI-R-CN0-bla-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.22937.2 /TIER=ConsEnd /STK=1 /UG=Rn.22937 /UG_TITLE=ESTs, Weakly similar to R6RT37 ribosomal protein L37, cytosolic (validated) - rat (R.norvegicus) BF416871 ATP-binding cassette, sub-family B (MDR/TAP), member 10 Abcb10 361439 NM_001012166 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032592 // integral to mitochondrial membrane // inferred from electronic annotation /// 0032592 // integral to mitochondrial membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1382964_at BI282553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282553 /DB_XREF=gi:14933437 /DB_XREF=UI-R-DD0-bzy-c-07-0-UI.s1 /CLONE=UI-R-DD0-bzy-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.78302.1 /TIER=ConsEnd /STK=1 /UG=Rn.78302 /UG_TITLE=ESTs BI282553 1382965_at AA996630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996630 /DB_XREF=gi:4280397 /DB_XREF=UI-R-C0-hj-b-02-0-UI.s1 /CLONE=UI-R-C0-hj-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.12347.1 /TIER=ConsEnd /STK=1 /UG=Rn.12347 /UG_TITLE=ESTs AA996630 1382966_at AI011717 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011717 /DB_XREF=gi:4133478 /DB_XREF=EST206168 /CLONE=ROVAZ27 /FEA=EST /CNT=2 /TID=Rn.30642.1 /TIER=ConsEnd /STK=1 /UG=Rn.30642 /UG_TITLE=ESTs AI011717 1382967_at BF388060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388060 /DB_XREF=gi:11372884 /DB_XREF=UI-R-CA1-bbx-g-10-0-UI.s1 /CLONE=UI-R-CA1-bbx-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.63768.1 /TIER=ConsEnd /STK=1 /UG=Rn.63768 /UG_TITLE=ESTs BF388060 G protein-coupled receptor 64 Gpr64 266735 NM_181366 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1382968_at AA944692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944692 /DB_XREF=gi:3104608 /DB_XREF=EST200191 /CLONE=REMAM85 /FEA=EST /CNT=2 /TID=Rn.7776.1 /TIER=ConsEnd /STK=1 /UG=Rn.7776 /UG_TITLE=ESTs AA944692 1382969_at AI029559 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029559 /DB_XREF=gi:4299396 /DB_XREF=UI-R-C0-ix-b-12-0-UI.s1 /CLONE=UI-R-C0-ix-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.18255.2 /TIER=ConsEnd /STK=1 /UG=Rn.18255 /UG_TITLE=ESTs AI029559 1382970_at AI764733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764733 /DB_XREF=gi:5210668 /DB_XREF=UI-R-Y0-ace-e-01-0-UI.s1 /CLONE=UI-R-Y0-ace-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.67473.1 /TIER=ConsEnd /STK=1 /UG=Rn.67473 /UG_TITLE=ESTs, Weakly similar to ubiquitin protein ligase E3 component n-recognin 1; ubiquitin-protein ligase e3 componen n-recognin (Mus musculus) (M.musculus) AI764733 similar to ubiquitin protein ligase E3 component n-recognin 2 LOC363188 363188 NM_001178071 /// XM_001061882 /// XM_002730019 0030163 // protein catabolic process // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1382971_at BF389407 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389407 /DB_XREF=gi:11374237 /DB_XREF=UI-R-BS2-bdj-e-01-0-UI.s1 /CLONE=UI-R-BS2-bdj-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.64459.1 /TIER=ConsEnd /STK=1 /UG=Rn.64459 /UG_TITLE=ESTs BF389407 programmed cell death 6 interacting protein Pdcd6ip 501083 NM_001029910 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from direct assay /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // not recorded /// 0048306 // calcium-dependent protein binding // not recorded 1382972_at BE103344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103344 /DB_XREF=gi:8495443 /DB_XREF=UI-R-BX0-aqz-f-10-0-UI.s1 /CLONE=UI-R-BX0-aqz-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.48916.1 /TIER=ConsEnd /STK=1 /UG=Rn.48916 /UG_TITLE=ESTs BE103344 UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae) Utp15 310019 NM_001107647 0006364 // rRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1382973_at AA945921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945921 /DB_XREF=gi:4132638 /DB_XREF=EST201420 /CLONE=RLUAZ02 /FEA=EST /CNT=2 /TID=Rn.32530.1 /TIER=ConsEnd /STK=1 /UG=Rn.32530 /UG_TITLE=ESTs, Weakly similar to PLASMA KALLIKREIN PRECURSOR (R.norvegicus) AA945921 testis serine protease 2 Tessp2 301027 NM_001106863 0006508 // proteolysis // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1382974_at AW921315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921315 /DB_XREF=gi:8087139 /DB_XREF=EST352619 /CLONE=RGIHQ90 /FEA=EST /CNT=2 /TID=Rn.44237.1 /TIER=ConsEnd /STK=1 /UG=Rn.44237 /UG_TITLE=ESTs AW921315 1382975_at BE097239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097239 /DB_XREF=gi:8488170 /DB_XREF=UI-R-BO1-apv-a-01-0-UI.s1 /CLONE=UI-R-BO1-apv-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.49570.1 /TIER=ConsEnd /STK=1 /UG=Rn.49570 /UG_TITLE=ESTs BE097239 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) Ceacam1 81613 NM_001033860 /// NM_001033861 /// NM_001033862 /// NM_031755 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // inferred from direct assay /// 0043406 // positive regulation of MAP kinase activity // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0019901 // protein kinase binding // inferred from physical interaction 1382976_at BM387928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387928 /DB_XREF=gi:18187981 /DB_XREF=UI-R-CN1-cjk-d-18-0-UI.s1 /CLONE=UI-R-CN1-cjk-d-18-0-UI /FEA=EST /CNT=2 /TID=Rn.11938.1 /TIER=ConsEnd /STK=1 /UG=Rn.11938 /UG_TITLE=ESTs BM387928 1382977_at AI234983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234983 /DB_XREF=gi:3828489 /DB_XREF=EST231545 /CLONE=ROVCL15 /FEA=EST /CNT=2 /TID=Rn.25255.1 /TIER=ConsEnd /STK=1 /UG=Rn.25255 /UG_TITLE=ESTs AI234983 1382978_at AA955691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955691 /DB_XREF=gi:4238086 /DB_XREF=UI-R-E1-fc-a-08-0-UI.s1 /CLONE=UI-R-E1-fc-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.8892.1 /TIER=ConsEnd /STK=1 /UG=Rn.8892 /UG_TITLE=ESTs AA955691 1382979_at AI229202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229202 /DB_XREF=gi:3813089 /DB_XREF=EST225897 /CLONE=RBRDF37 /FEA=EST /CNT=2 /TID=Rn.24415.1 /TIER=ConsEnd /STK=1 /UG=Rn.24415 /UG_TITLE=ESTs AI229202 1382980_at AA964943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964943 /DB_XREF=gi:4279817 /DB_XREF=UI-R-C0-hb-a-05-0-UI.s1 /CLONE=UI-R-C0-hb-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.23240.1 /TIER=ConsEnd /STK=1 /UG=Rn.23240 /UG_TITLE=ESTs AA964943 1382981_at AI138017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI138017 /DB_XREF=gi:3638794 /DB_XREF=UI-R-C2p-oi-d-10-0-UI.s1 /CLONE=UI-R-C2p-oi-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.24146.1 /TIER=ConsEnd /STK=1 /UG=Rn.24146 /UG_TITLE=ESTs AI138017 Abelson helper integration site 1 Ahi1 308923 NM_001002277 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005912 // adherens junction // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0005932 // microtubule basal body // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 1382982_at AI230669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230669 /DB_XREF=gi:3814556 /DB_XREF=EST227364 /CLONE=REMCZ71 /FEA=EST /CNT=2 /TID=Rn.44005.1 /TIER=ConsEnd /STK=1 /UG=Rn.44005 /UG_TITLE=ESTs AI230669 1382983_at AI136134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136134 /DB_XREF=gi:3636911 /DB_XREF=UI-R-C2p-ny-e-06-0-UI.s1 /CLONE=UI-R-C2p-ny-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.22998.1 /TIER=ConsEnd /STK=1 /UG=Rn.22998 /UG_TITLE=ESTs AI136134 1382984_at AI073272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073272 /DB_XREF=gi:3399466 /DB_XREF=UI-R-Y0-mb-f-08-0-UI.s1 /CLONE=UI-R-Y0-mb-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.34412.1 /TIER=ConsEnd /STK=1 /UG=Rn.34412 /UG_TITLE=ESTs AI073272 torsin family 1, member B Tor1b 311854 NM_001039197 0051085 // chaperone mediated protein folding requiring cofactor // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1382985_at AI045391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045391 /DB_XREF=gi:3292210 /DB_XREF=UI-R-C1-ka-h-05-0-UI.s1 /CLONE=UI-R-C1-ka-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.20877.1 /TIER=ConsEnd /STK=1 /UG=Rn.20877 /UG_TITLE=ESTs AI045391 1382986_at BI288209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288209 /DB_XREF=gi:14944570 /DB_XREF=UI-R-DK0-ccy-b-08-0-UI.s1 /CLONE=UI-R-DK0-ccy-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.36575.1 /TIER=ConsEnd /STK=1 /UG=Rn.36575 /UG_TITLE=ESTs, Highly similar to PLSB RAT GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE, MITOCHONDRIAL PRECURSOR (R.norvegicus) BI288209 glycerol-3-phosphate acyltransferase, mitochondrial Gpam 29653 NM_017274 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // not recorded /// 0006637 // acyl-CoA metabolic process // inferred from electronic annotation /// 0006637 // acyl-CoA metabolic process // not recorded /// 0006641 // triglyceride metabolic process // not recorded /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006650 // glycerophospholipid metabolic process // inferred from electronic annotation /// 0006650 // glycerophospholipid metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from electronic annotation /// 0009749 // response to glucose stimulus // not recorded /// 0009750 // response to fructose stimulus // inferred from expression pattern /// 0010867 // positive regulation of triglyceride biosynthetic process // inferred from direct assay /// 0014823 // response to activity // inferred from direct assay /// 0019432 // triglyceride biosynthetic process // not recorded /// 0019432 // triglyceride biosynthetic process // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from direct assay /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0042104 // positive regulation of activated T cell proliferation // inferred from electronic annotation /// 0042104 // positive regulation of activated T cell proliferation // not recorded /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0050707 // regulation of cytokine secretion // inferred from electronic annotation /// 0050707 // regulation of cytokine secretion // not recorded /// 0051607 // defense response to virus // inferred from electronic annotation /// 0051607 // defense response to virus // not recorded /// 0055089 // fatty acid homeostasis // inferred from electronic annotation /// 0055089 // fatty acid homeostasis // not recorded /// 0055091 // phospholipid homeostasis // inferred from electronic annotation /// 0055091 // phospholipid homeostasis // not recorded /// 0070236 // negative regulation of activation-induced cell death of T cells // inferred from electronic annotation /// 0070236 // negative regulation of activation-induced cell death of T cells // not recorded /// 0070970 // interleukin-2 secretion // inferred from electronic annotation /// 0070970 // interleukin-2 secretion // not recorded 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from direct assay 0004366 // glycerol-3-phosphate O-acyltransferase activity // inferred from direct assay /// 0004366 // glycerol-3-phosphate O-acyltransferase activity // not recorded /// 0004366 // glycerol-3-phosphate O-acyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1382987_at AA874945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA874945 /DB_XREF=gi:4230827 /DB_XREF=UI-R-E0-ci-e-05-0-UI.s1 /CLONE=UI-R-E0-ci-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.23409.1 /TIER=ConsEnd /STK=1 /UG=Rn.23409 /UG_TITLE=ESTs AA874945 1382988_at AI231651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231651 /DB_XREF=gi:3815531 /DB_XREF=EST228339 /CLONE=REMDN19 /FEA=EST /CNT=2 /TID=Rn.25161.1 /TIER=ConsEnd /STK=1 /UG=Rn.25161 /UG_TITLE=ESTs, Weakly similar to A36747 neutrophil cytochrome b, 22K polypeptide homolog - mouse (M.musculus) AI231651 1382989_at BE116242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116242 /DB_XREF=gi:8508347 /DB_XREF=UI-R-BS1-ayb-a-09-0-UI.s1 /CLONE=UI-R-BS1-ayb-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.52642.1 /TIER=ConsEnd /STK=1 /UG=Rn.52642 /UG_TITLE=ESTs BE116242 1382990_at AI236245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236245 /DB_XREF=gi:3829751 /DB_XREF=EST232807 /CLONE=ROVDD18 /FEA=EST /CNT=2 /TID=Rn.21378.1 /TIER=ConsEnd /STK=1 /UG=Rn.21378 /UG_TITLE=ESTs AI236245 1382991_at AA963798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963798 /DB_XREF=gi:4278740 /DB_XREF=UI-R-E1-gk-h-01-0-UI.s1 /CLONE=UI-R-E1-gk-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.23211.1 /TIER=ConsEnd /STK=1 /UG=Rn.23211 /UG_TITLE=ESTs, Weakly similar to S72435 RNA-binding protein TIA-1 - mouse (M.musculus) AA963798 TIA1 cytotoxic granule-associated RNA binding protein Tia1 312510 NM_001012096 0017148 // negative regulation of translation // not recorded /// 0042036 // negative regulation of cytokine biosynthetic process // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017091 // AU-rich element binding // not recorded 1382992_at AI179314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179314 /DB_XREF=gi:3729952 /DB_XREF=EST223008 /CLONE=RSPCF05 /FEA=EST /CNT=2 /TID=Rn.24210.1 /TIER=ConsEnd /STK=1 /UG=Rn.24210 /UG_TITLE=ESTs AI179314 1382993_at AI236152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236152 /DB_XREF=gi:3829658 /DB_XREF=EST232714 /CLONE=ROVDC06 /FEA=EST /CNT=2 /TID=Rn.25176.1 /TIER=ConsEnd /STK=1 /UG=Rn.25176 /UG_TITLE=ESTs AI236152 Bcl-2 binding component 3 Bbc3 317673 NM_173837 0001836 // release of cytochrome c from mitochondria // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from direct assay /// 0006917 // induction of apoptosis // inferred from mutant phenotype /// 0006917 // induction of apoptosis // not recorded /// 0006919 // activation of caspase activity // not recorded /// 0010001 // glial cell differentiation // inferred from expression pattern /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0045926 // negative regulation of growth // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0051400 // BH domain binding // inferred from direct assay 1382994_at AI236143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236143 /DB_XREF=gi:3829649 /DB_XREF=EST232705 /CLONE=ROVDB93 /FEA=EST /CNT=2 /TID=Rn.25481.1 /TIER=ConsEnd /STK=1 /UG=Rn.25481 /UG_TITLE=ESTs AI236143 1382995_at AA859669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859669 /DB_XREF=gi:4230214 /DB_XREF=UI-R-E0-bs-d-01-0-UI.s1 /CLONE=UI-R-E0-bs-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.57331.1 /TIER=ConsEnd /STK=1 /UG=Rn.57331 /UG_TITLE=ESTs AA859669 1382996_at AI179926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179926 /DB_XREF=gi:3730564 /DB_XREF=EST223657 /CLONE=RSPCN80 /FEA=EST /CNT=2 /TID=Rn.34033.1 /TIER=ConsEnd /STK=1 /UG=Rn.34033 /UG_TITLE=ESTs, Weakly similar to COLLAGEN ALPHA 1(III) CHAIN (R.norvegicus) AI179926 proline/histidine/glycine-rich 1 Phgr1 499867 XM_001080765 /// XM_575209 1382997_at AA998643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998643 /DB_XREF=gi:4291271 /DB_XREF=UI-R-C0-ig-a-05-0-UI.s1 /CLONE=UI-R-C0-ig-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.23315.1 /TIER=ConsEnd /STK=1 /UG=Rn.23315 /UG_TITLE=ESTs, Weakly similar to JE0346 high-affinity carntine transporter, CT1 - rat (R.norvegicus) AA998643 solute carrier family 22 (organic anion transporter), member 13 Slc22a13 316062 NM_001126285 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1382998_at AI044778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044778 /DB_XREF=gi:3290841 /DB_XREF=UI-R-C1-jt-b-04-0-UI.s1 /CLONE=UI-R-C1-jt-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.20871.1 /TIER=ConsEnd /STK=1 /UG=Rn.20871 /UG_TITLE=ESTs AI044778 1382999_at AI411747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411747 /DB_XREF=gi:4255251 /DB_XREF=EST240041 /CLONE=RPLDJ81 /FEA=EST /CNT=2 /TID=Rn.81166.1 /TIER=ConsEnd /STK=1 /UG=Rn.81166 /UG_TITLE=ESTs AI411747 ADP-ribosyltransferase 2b Art2b 293152 NM_198735 0006471 // protein ADP-ribosylation // inferred from electronic annotation /// 0018120 // peptidyl-arginine ADP-ribosylation // inferred from electronic annotation /// 0018120 // peptidyl-arginine ADP-ribosylation // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from direct assay /// 0003956 // NAD(P)+-protein-arginine ADP-ribosyltransferase activity // inferred from electronic annotation /// 0003956 // NAD(P)+-protein-arginine ADP-ribosyltransferase activity // inferred from mutant phenotype /// 0003956 // NAD(P)+-protein-arginine ADP-ribosyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1383000_at AI578317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578317 /DB_XREF=gi:4562693 /DB_XREF=UI-R-G0-ur-h-08-0-UI.s3 /CLONE=UI-R-G0-ur-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.34122.1 /TIER=ConsEnd /STK=1 /UG=Rn.34122 /UG_TITLE=ESTs AI578317 1383001_at AI178157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178157 /DB_XREF=gi:3728795 /DB_XREF=EST221822 /CLONE=RPLCM93 /FEA=EST /CNT=2 /TID=Rn.7434.1 /TIER=ConsEnd /STK=1 /UG=Rn.7434 /UG_TITLE=ESTs AI178157 1383002_at AA998043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998043 /DB_XREF=gi:4287116 /DB_XREF=UI-R-C0-hx-h-03-0-UI.s1 /CLONE=UI-R-C0-hx-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.12855.2 /TIER=ConsEnd /STK=1 /UG=Rn.12855 /UG_TITLE=ESTs AA998043 1383003_at AA924735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924735 /DB_XREF=gi:4235926 /DB_XREF=UI-R-A1-ed-g-01-0-UI.s1 /CLONE=UI-R-A1-ed-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.23016.1 /TIER=ConsEnd /STK=1 /UG=Rn.23016 /UG_TITLE=ESTs, Moderately similar to LCT2 MOUSE LEUKOCYTE CELL-DERIVED CHEMOTAXIN 2 PRECURSOR (M.musculus) AA924735 leukocyte cell-derived chemotaxin 2 Lect2 361205 NM_001108405 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded 1383004_at BF397074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397074 /DB_XREF=gi:11382057 /DB_XREF=UI-R-BS2-beh-g-06-0-UI.s1 /CLONE=UI-R-BS2-beh-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.57439.1 /TIER=ConsEnd /STK=1 /UG=Rn.57439 /UG_TITLE=ESTs BF397074 adenosylhomocysteinase-like 1 Ahcyl1 362013 NM_001108561 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004013 // adenosylhomocysteinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1383005_at BM383579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383579 /DB_XREF=gi:18183632 /DB_XREF=UI-R-DM1-cka-j-21-0-UI.s1 /CLONE=UI-R-DM1-cka-j-21-0-UI /FEA=EST /CNT=2 /TID=Rn.9050.1 /TIER=ConsEnd /STK=1 /UG=Rn.9050 /UG_TITLE=ESTs BM383579 1383006_at AW528365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528365 /DB_XREF=gi:7170779 /DB_XREF=UI-R-BT1-ajx-f-04-0-UI.s1 /CLONE=UI-R-BT1-ajx-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.17912.1 /TIER=ConsEnd /STK=1 /UG=Rn.17912 /UG_TITLE=ESTs AW528365 1383007_at AI502357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502357 /DB_XREF=gi:4400208 /DB_XREF=UI-R-C1-ll-a-09-0-UI.s1 /CLONE=UI-R-C1-ll-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.73890.1 /TIER=ConsEnd /STK=1 /UG=Rn.73890 /UG_TITLE=ESTs AI502357 Bardet-Biedl syndrome 4 Bbs4 300754 NM_001106826 0000226 // microtubule cytoskeleton organization // not recorded /// 0001843 // neural tube closure // not recorded /// 0001895 // retina homeostasis // not recorded /// 0007286 // spermatid development // not recorded /// 0007608 // sensory perception of smell // not recorded /// 0016358 // dendrite development // not recorded /// 0019216 // regulation of lipid metabolic process // not recorded /// 0021756 // striatum development // not recorded /// 0021766 // hippocampus development // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0030534 // adult behavior // not recorded /// 0032465 // regulation of cytokinesis // not recorded /// 0033205 // cell cycle cytokinesis // not recorded /// 0033365 // protein localization in organelle // not recorded /// 0034454 // microtubule anchoring at centrosome // not recorded /// 0035058 // sensory cilium assembly // not recorded /// 0042384 // cilium assembly // not recorded /// 0045444 // fat cell differentiation // not recorded /// 0045494 // photoreceptor cell maintenance // not recorded /// 0045724 // positive regulation of flagellum assembly // not recorded /// 0046548 // retinal rod cell development // not recorded /// 0048854 // brain morphogenesis // not recorded /// 0051297 // centrosome organization // not recorded /// 0051457 // maintenance of protein location in nucleus // not recorded /// 0060271 // cilium morphogenesis // not recorded /// 0060296 // regulation of cilium beat frequency involved in ciliary motility // not recorded 0000242 // pericentriolar material // not recorded /// 0005813 // centrosome // not recorded /// 0005814 // centriole // not recorded /// 0005932 // microtubule basal body // not recorded /// 0031513 // nonmotile primary cilium // not recorded /// 0031514 // motile secondary cilium // not recorded /// 0034451 // centriolar satellite // not recorded /// 0034464 // BBSome // not recorded /// 0060170 // cilium membrane // not recorded 0003777 // microtubule motor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0034452 // dynactin binding // not recorded /// 0043014 // alpha-tubulin binding // not recorded /// 0048487 // beta-tubulin binding // not recorded 1383008_at AW535494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535494 /DB_XREF=gi:7177908 /DB_XREF=UI-R-BS0-aof-h-01-0-UI.s1 /CLONE=UI-R-BS0-aof-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.48504.1 /TIER=ConsEnd /STK=1 /UG=Rn.48504 /UG_TITLE=ESTs, Moderately similar to T46486 chromosomal protein CAPC homolog DKFZp434F205.1 (H.sapiens) AW535494 structural maintenance of chromosomes 4 Smc4 295107 NM_001037185 0007076 // mitotic chromosome condensation // inferred from electronic annotation /// 0007076 // mitotic chromosome condensation // not recorded 0000796 // condensin complex // inferred from electronic annotation /// 0000796 // condensin complex // not recorded /// 0005694 // chromosome // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1383009_at BE117039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117039 /DB_XREF=gi:8509144 /DB_XREF=UI-R-BJ1-awt-b-05-0-UI.s1 /CLONE=UI-R-BJ1-awt-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.18254.1 /TIER=ConsEnd /STK=1 /UG=Rn.18254 /UG_TITLE=ESTs BE117039 1383010_at AW531880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531880 /DB_XREF=gi:7174294 /DB_XREF=UI-R-BS0-amj-d-03-0-UI.s1 /CLONE=UI-R-BS0-amj-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.32518.1 /TIER=ConsEnd /STK=1 /UG=Rn.32518 /UG_TITLE=ESTs AW531880 1383011_at AI501182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501182 /DB_XREF=gi:4399033 /DB_XREF=UI-R-C2p-rt-e-07-0-UI.s1 /CLONE=UI-R-C2p-rt-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.35294.1 /TIER=ConsEnd /STK=1 /UG=Rn.35294 /UG_TITLE=ESTs AI501182 eukaryotic translation initiation factor 2A Eif2a 502531 NM_001109339 0006412 // translation // not recorded /// 0006417 // regulation of translation // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0009967 // positive regulation of signal transduction // not recorded /// 0032933 // SREBP-mediated signaling pathway // not recorded /// 0042255 // ribosome assembly // not recorded 0005737 // cytoplasm // not recorded /// 0005850 // eukaryotic translation initiation factor 2 complex // not recorded 0000049 // tRNA binding // not recorded /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003743 // translation initiation factor activity // not recorded /// 0043022 // ribosome binding // not recorded 1383012_at BE115155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115155 /DB_XREF=gi:8507260 /DB_XREF=UI-R-BS1-axt-h-05-0-UI.s1 /CLONE=UI-R-BS1-axt-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.15145.1 /TIER=ConsEnd /STK=1 /UG=Rn.15145 /UG_TITLE=ESTs BE115155 rhophilin, Rho GTPase binding protein 2 Rhpn2 308516 NM_001107505 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383013_at AI045857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045857 /DB_XREF=gi:3292676 /DB_XREF=UI-R-C1-km-e-09-0-UI.s1 /CLONE=UI-R-C1-km-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.22101.1 /TIER=ConsEnd /STK=1 /UG=Rn.22101 /UG_TITLE=ESTs, Moderately similar to BTE1 RAT TRANSCRIPTION FACTOR BTEB1 (R.norvegicus) AI045857 Kruppel-like factor 13 Klf13 499171 NM_001109147 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1383014_at AI639078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639078 /DB_XREF=gi:4700112 /DB_XREF=rx04485s /CLONE=rx04485 /FEA=EST /CNT=2 /TID=Rn.64255.1 /TIER=ConsEnd /STK=1 /UG=Rn.64255 /UG_TITLE=ESTs AI639078 1383015_at BF406973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406973 /DB_XREF=gi:11394913 /DB_XREF=UI-R-BJ2-bps-g-09-0-UI.s1 /CLONE=UI-R-BJ2-bps-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.61004.1 /TIER=ConsEnd /STK=1 /UG=Rn.61004 /UG_TITLE=ESTs BF406973 TBC1 domain family, member 10C Tbc1d10c 361697 NM_001081980 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1383016_at BF288531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288531 /DB_XREF=gi:11219601 /DB_XREF=EST453122 /CLONE=RGIGU67 /FEA=EST /CNT=2 /TID=Rn.17737.1 /TIER=ConsEnd /STK=1 /UG=Rn.17737 /UG_TITLE=ESTs BF288531 1383017_at AI639001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639001 /DB_XREF=gi:4700035 /DB_XREF=rx02427s /CLONE=rx02427 /FEA=EST /CNT=2 /TID=Rn.66849.1 /TIER=ConsEnd /STK=1 /UG=Rn.66849 /UG_TITLE=ESTs AI639001 protein tyrosine phosphatase, receptor type, M Ptprm 29616 NM_001168632 0001937 // negative regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0010596 // negative regulation of endothelial cell migration // inferred from electronic annotation /// 0010596 // negative regulation of endothelial cell migration // not recorded /// 0010842 // retina layer formation // inferred from electronic annotation /// 0010842 // retina layer formation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // not recorded /// 0031175 // neuron projection development // inferred from electronic annotation /// 0031175 // neuron projection development // not recorded /// 0031290 // retinal ganglion cell axon guidance // inferred from electronic annotation /// 0031290 // retinal ganglion cell axon guidance // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0045909 // positive regulation of vasodilation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005911 // cell-cell junction // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005001 // transmembrane receptor protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005001 // transmembrane receptor protein tyrosine phosphatase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0045296 // cadherin binding // inferred from electronic annotation /// 0045296 // cadherin binding // not recorded 1383018_at BF420082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420082 /DB_XREF=gi:11408071 /DB_XREF=UI-R-BJ2-bpm-g-02-0-UI.s1 /CLONE=UI-R-BJ2-bpm-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.72651.1 /TIER=ConsEnd /STK=1 /UG=Rn.72651 /UG_TITLE=ESTs, Weakly similar to FIBA RAT FIBRINOGEN ALPHAALPHA-E CHAIN PRECURSOR (R.norvegicus) BF420082 angiopoietin-like 6 Angptl6 298698 NM_001106702 0007165 // signal transduction // inferred from electronic annotation 0005615 // extracellular space // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from electronic annotation /// 0030141 // stored secretory granule // not recorded 0005102 // receptor binding // inferred from electronic annotation 1383019_at BF558478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558478 /DB_XREF=gi:11668208 /DB_XREF=UI-R-C1-la-e-02-0-UI.r1 /CLONE=UI-R-C1-la-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.76230.1 /TIER=ConsEnd /STK=1 /UG=Rn.76230 /UG_TITLE=ESTs BF558478 1383020_at AA899161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899161 /DB_XREF=gi:4231659 /DB_XREF=UI-R-E0-cx-e-11-0-UI.s1 /CLONE=UI-R-E0-cx-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.14900.1 /TIER=ConsEnd /STK=1 /UG=Rn.14900 /UG_TITLE=ESTs AA899161 centrobin, centrosomal BRCA2 interacting protein Cntrob 303240 NM_001134645 0000910 // cytokinesis // not recorded /// 0007099 // centriole replication // not recorded /// 0051299 // centrosome separation // not recorded 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // not recorded /// 0005814 // centriole // not recorded 0005515 // protein binding // not recorded /// 0019904 // protein domain specific binding // not recorded 1383021_at AI103845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103845 /DB_XREF=gi:3708331 /DB_XREF=EST213134 /CLONE=RHEBT79 /FEA=EST /CNT=2 /TID=Rn.65699.1 /TIER=ConsEnd /STK=1 /UG=Rn.65699 /UG_TITLE=ESTs, Moderately similar to PAGT RAT POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE (R.norvegicus) AI103845 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13) Galnt13 311039 NM_199106 0006493 // protein O-linked glycosylation // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // not recorded /// 0005529 // sugar binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1383022_at BF390046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390046 /DB_XREF=gi:11374888 /DB_XREF=UI-R-BS2-bdr-f-07-0-UI.s1 /CLONE=UI-R-BS2-bdr-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.59079.1 /TIER=ConsEnd /STK=1 /UG=Rn.59079 /UG_TITLE=ESTs BF390046 1383023_at AI235658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235658 /DB_XREF=gi:3829164 /DB_XREF=EST232220 /CLONE=ROVCU69 /FEA=EST /CNT=2 /TID=Rn.65873.1 /TIER=ConsEnd /STK=1 /UG=Rn.65873 /UG_TITLE=ESTs, Weakly similar to ubiquitin conjugating enzyme (Rattus norvegicus) (R.norvegicus) AI235658 ubiquitin-conjugating enzyme E2H Ube2h 296956 NM_001172127 1383024_at AW521625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521625 /DB_XREF=gi:7164010 /DB_XREF=UI-R-BO0-ago-h-06-0-UI.s1 /CLONE=UI-R-BO0-ago-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.21455.1 /TIER=ConsEnd /STK=1 /UG=Rn.21455 /UG_TITLE=ESTs AW521625 1383025_at BE097791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097791 /DB_XREF=gi:8488722 /DB_XREF=UI-R-BO1-aqb-g-07-0-UI.s1 /CLONE=UI-R-BO1-aqb-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.41557.1 /TIER=ConsEnd /STK=1 /UG=Rn.41557 /UG_TITLE=ESTs BE097791 meningioma expressed antigen 5 (hyaluronidase) Mgea5 154968 NM_131904 0006044 // N-acetylglucosamine metabolic process // inferred from mutant phenotype /// 0006612 // protein targeting to membrane // inferred from mutant phenotype /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from mutant phenotype /// 0010616 // negative regulation of cardiac muscle adaptation // inferred from mutant phenotype /// 0031343 // positive regulation of cell killing // inferred from mutant phenotype /// 0032024 // positive regulation of insulin secretion // inferred from mutant phenotype /// 0043243 // positive regulation of protein complex disassembly // inferred from mutant phenotype /// 0045862 // positive regulation of proteolysis // inferred from mutant phenotype /// 0046060 // dATP metabolic process // inferred from mutant phenotype /// 0046326 // positive regulation of glucose import // inferred from mutant phenotype /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0051054 // positive regulation of DNA metabolic process // inferred from mutant phenotype /// 0051901 // positive regulation of mitochondrial depolarization // inferred from mutant phenotype /// 0051928 // positive regulation of calcium ion transport // inferred from mutant phenotype /// 0060051 // negative regulation of protein glycosylation // inferred from mutant phenotype /// 0060124 // positive regulation of growth hormone secretion // inferred from mutant phenotype /// 0070265 // necrotic cell death // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from mutant phenotype /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004563 // beta-N-acetylhexosaminidase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016231 // beta-N-acetylglucosaminidase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation 1383026_at BF420195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420195 /DB_XREF=gi:11408184 /DB_XREF=UI-R-BJ2-bpk-a-10-0-UI.s1 /CLONE=UI-R-BJ2-bpk-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.22598.3 /TIER=ConsEnd /STK=1 /UG=Rn.22598 /UG_TITLE=ESTs, Weakly similar to T00022 B120 protein (H.sapiens) BF420195 AT rich interactive domain 1B (Swi1 like) Arid1b 282546 NM_172157 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0016514 // SWI/SNF complex // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383027_at AA900262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900262 /DB_XREF=gi:4232753 /DB_XREF=UI-R-E0-de-g-05-0-UI.s2 /CLONE=UI-R-E0-de-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.22679.1 /TIER=ConsEnd /STK=1 /UG=Rn.22679 /UG_TITLE=ESTs AA900262 1383028_at BE120656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120656 /DB_XREF=gi:8512761 /DB_XREF=UI-R-CA0-bay-a-07-0-UI.s1 /CLONE=UI-R-CA0-bay-a-07-0-UI /FEA=EST /CNT=2 /TID=Rn.53626.1 /TIER=ConsEnd /STK=1 /UG=Rn.53626 /UG_TITLE=ESTs BE120656 carnitine deficiency-associated gene expressed in ventricle 3 homolog (mouse) Cdv3 315970 NM_001014097 0006355 // regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045817 // positive regulation of transcription from RNA polymerase II promoter, global // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0046983 // protein dimerization activity // inferred from sequence or structural similarity 1383029_at AA946413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946413 /DB_XREF=gi:3106329 /DB_XREF=EST201912 /CLONE=RLUBH84 /FEA=EST /CNT=2 /TID=Rn.8043.1 /TIER=ConsEnd /STK=1 /UG=Rn.8043 /UG_TITLE=ESTs AA946413 1383030_at AI502367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502367 /DB_XREF=gi:4400218 /DB_XREF=UI-R-C0-jf-f-07-0-UI.s1 /CLONE=UI-R-C0-jf-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.65875.1 /TIER=ConsEnd /STK=1 /UG=Rn.65875 /UG_TITLE=ESTs AI502367 1383031_at AI030212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030212 /DB_XREF=gi:3248038 /DB_XREF=UI-R-C0-jb-c-10-0-UI.s1 /CLONE=UI-R-C0-jb-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.21569.1 /TIER=ConsEnd /STK=1 /UG=Rn.21569 /UG_TITLE=ESTs AI030212 1383032_at BG666286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666286 /DB_XREF=gi:13888208 /DB_XREF=DRABMH10 /CLONE=DRABMH10 /FEA=EST /CNT=2 /TID=Rn.41324.1 /TIER=ConsEnd /STK=1 /UG=Rn.41324 /UG_TITLE=ESTs BG666286 1383033_at AI059738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059738 /DB_XREF=gi:3333515 /DB_XREF=UI-R-C1-lk-f-08-0-UI.s1 /CLONE=UI-R-C1-lk-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.19460.1 /TIER=ConsEnd /STK=1 /UG=Rn.19460 /UG_TITLE=ESTs AI059738 1383034_at AA998572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998572 /DB_XREF=gi:4290783 /DB_XREF=UI-R-C0-if-d-08-0-UI.s1 /CLONE=UI-R-C0-if-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.33148.1 /TIER=ConsEnd /STK=1 /UG=Rn.33148 /UG_TITLE=ESTs AA998572 RING1 and YY1 binding protein Rybp 312603 NM_001107879 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded 1383035_at AI012890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012890 /DB_XREF=gi:3226722 /DB_XREF=EST207341 /CLONE=RPLBC87 /FEA=EST /CNT=2 /TID=Rn.17909.1 /TIER=ConsEnd /STK=1 /UG=Rn.17909 /UG_TITLE=ESTs, Weakly similar to THROMBIN RECEPTOR PRECURSOR (R.norvegicus) AI012890 free fatty acid receptor 2 Ffar2 292794 NM_001005877 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation 1383036_at AI137547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137547 /DB_XREF=gi:3638324 /DB_XREF=UI-R-C2p-oc-g-06-0-UI.s1 /CLONE=UI-R-C2p-oc-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.22895.1 /TIER=ConsEnd /STK=1 /UG=Rn.22895 /UG_TITLE=ESTs AI137547 1383037_at AI232159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232159 /DB_XREF=gi:4135721 /DB_XREF=EST228847 /CLONE=RKIBX60 /FEA=EST /CNT=2 /TID=Rn.48918.1 /TIER=ConsEnd /STK=1 /UG=Rn.48918 /UG_TITLE=ESTs AI232159 polymerase (DNA-directed), delta interacting protein 2 Poldip2 287544 NM_001105816 0070584 // mitochondrion morphogenesis // inferred from electronic annotation /// 0070584 // mitochondrion morphogenesis // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0042645 // mitochondrial nucleoid // not recorded 1383038_at BG377434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377434 /DB_XREF=gi:13301906 /DB_XREF=UI-R-CU0-buy-e-09-0-UI.s1 /CLONE=UI-R-CU0-buy-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.21729.1 /TIER=ConsEnd /STK=1 /UG=Rn.21729 /UG_TITLE=ESTs BG377434 DENN/MADD domain containing 5A Dennd5a 308942 NM_001107546 0050790 // regulation of catalytic activity // not recorded 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // not recorded /// 0017137 // Rab GTPase binding // inferred from electronic annotation 1383039_at AI113252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113252 /DB_XREF=gi:3513201 /DB_XREF=UI-R-C2p-nt-d-05-0-UI.s1 /CLONE=UI-R-C2p-nt-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.22882.1 /TIER=ConsEnd /STK=1 /UG=Rn.22882 /UG_TITLE=ESTs AI113252 1383040_a_at AI044098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044098 /DB_XREF=gi:3291001 /DB_XREF=UI-R-C1-jv-b-03-0-UI.s1 /CLONE=UI-R-C1-jv-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.20725.1 /TIER=ConsEnd /STK=1 /UG=Rn.20725 /UG_TITLE=ESTs AI044098 hypothetical protein LOC100360384 LOC100360384 100360384 XM_002726507 /// XM_002729471 1383041_x_at AI044098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044098 /DB_XREF=gi:3291001 /DB_XREF=UI-R-C1-jv-b-03-0-UI.s1 /CLONE=UI-R-C1-jv-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.20725.1 /TIER=ConsEnd /STK=1 /UG=Rn.20725 /UG_TITLE=ESTs AI044098 hypothetical protein LOC100360384 LOC100360384 100360384 XM_002726507 /// XM_002729471 1383042_at AA944383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944383 /DB_XREF=gi:3104299 /DB_XREF=EST199882 /CLONE=REMAG30 /FEA=EST /CNT=2 /TID=Rn.22991.1 /TIER=ConsEnd /STK=1 /UG=Rn.22991 /UG_TITLE=ESTs AA944383 1383043_at AA955140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955140 /DB_XREF=gi:4238813 /DB_XREF=UI-R-A1-ez-c-04-0-UI.s2 /CLONE=UI-R-A1-ez-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.23103.1 /TIER=ConsEnd /STK=1 /UG=Rn.23103 /UG_TITLE=ESTs AA955140 Splicing factor, arginine/serine-rich 2, interacting protein Sfrs2ip 312030 XM_002726968 /// XM_231361 0000245 // spliceosome assembly // not recorded /// 0000375 // RNA splicing, via transesterification reactions // not recorded /// 0008380 // RNA splicing // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383044_at BM385117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385117 /DB_XREF=gi:18185170 /DB_XREF=UI-R-CN1-cjm-d-08-0-UI.s2 /CLONE=UI-R-CN1-cjm-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.81527.1 /TIER=ConsEnd /STK=1 /UG=Rn.81527 /UG_TITLE=ESTs BM385117 1383045_at AA943688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943688 /DB_XREF=gi:3103604 /DB_XREF=EST199187 /CLONE=RBRAN74 /FEA=EST /CNT=2 /TID=Rn.7620.1 /TIER=ConsEnd /STK=1 /UG=Rn.7620 /UG_TITLE=ESTs AA943688 1383046_at AA957258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957258 /DB_XREF=gi:4277148 /DB_XREF=UI-R-E1-fp-h-02-0-UI.s1 /CLONE=UI-R-E1-fp-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.9227.1 /TIER=ConsEnd /STK=1 /UG=Rn.9227 /UG_TITLE=ESTs, Weakly similar to A35068 complement factor H-related protein 3A45G4 - mouse (M.musculus) AA957258 complement factor H /// Cfh protein-like Cfh /// LOC100360824 100360824 /// 155012 NM_130409 /// XM_002728010 0006956 // complement activation // inferred from expression pattern /// 0030449 // regulation of complement activation // inferred from direct assay /// 0030449 // regulation of complement activation // not recorded 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0001851 // complement component C3b binding // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0008201 // heparin binding // not recorded /// 0043499 // eukaryotic cell surface binding // not recorded 1383047_at AA957335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957335 /DB_XREF=gi:4277225 /DB_XREF=UI-R-E1-fu-h-03-0-UI.s1 /CLONE=UI-R-E1-fu-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.9252.1 /TIER=ConsEnd /STK=1 /UG=Rn.9252 /UG_TITLE=ESTs AA957335 growth arrest specific 6 Gas6 58935 NM_057100 0009267 // cellular response to starvation // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0040008 // regulation of growth // inferred from electronic annotation /// 0042246 // tissue regeneration // traceable author statement /// 0048771 // tissue remodeling // traceable author statement /// 0071363 // cellular response to growth factor stimulus // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0008083 // growth factor activity // traceable author statement /// 0030971 // receptor tyrosine kinase binding // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 1383048_at AI013384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013384 /DB_XREF=gi:3227440 /DB_XREF=EST208059 /CLONE=RSPBK31 /FEA=EST /CNT=2 /TID=Rn.34115.2 /TIER=ConsEnd /STK=1 /UG=Rn.34115 /UG_TITLE=ESTs, Weakly similar to T25862 hypothetical protein T04C9.1 - Caenorhabditis elegans (C.elegans) AI013384 Rho GTPase activating protein 10 Arhgap10 688429 NM_001109501 0007010 // cytoskeleton organization // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0046847 // filopodium assembly // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005100 // Rho GTPase activator activity // not recorded /// 0008093 // cytoskeletal adaptor activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation 1383049_at AW531966 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531966 /DB_XREF=gi:7174380 /DB_XREF=UI-R-C4-alh-e-01-0-UI.s1 /CLONE=UI-R-C4-alh-e-01-0-UI /FEA=EST /CNT=32 /TID=Rn.8608.1 /TIER=ConsEnd /STK=0 /UG=Rn.8608 /UG_TITLE=ESTs AW531966 kelch-like 8 (Drosophila) Klhl8 289457 NM_001105995 0005515 // protein binding // inferred from electronic annotation 1383050_at AW523199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523199 /DB_XREF=gi:7165584 /DB_XREF=UI-R-BO0-ahs-e-03-0-UI.s1 /CLONE=UI-R-BO0-ahs-e-03-0-UI /FEA=EST /CNT=27 /TID=Rn.3337.3 /TIER=ConsEnd /STK=0 /UG=Rn.3337 /UG_TITLE=ESTs AW523199 centromere protein V Cenpv 501702 XM_002724504 /// XM_577104 0008152 // metabolic process // inferred from electronic annotation /// 0031508 // centromeric heterochromatin formation // not recorded /// 0032467 // positive regulation of cytokinesis // not recorded /// 0033044 // regulation of chromosome organization // not recorded /// 0034508 // centromere complex assembly // not recorded 0000776 // kinetochore // not recorded /// 0005634 // nucleus // not recorded /// 0051233 // spindle midzone // not recorded 0016846 // carbon-sulfur lyase activity // inferred from electronic annotation 1383051_at AW915925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915925 /DB_XREF=gi:8081637 /DB_XREF=EST347229 /CLONE=RGIDC68 /FEA=EST /CNT=25 /TID=Rn.4219.1 /TIER=ConsEnd /STK=0 /UG=Rn.4219 /UG_TITLE=ESTs AW915925 Synaptotagmin binding, cytoplasmic RNA interacting protein Syncrip 363113 NM_001047916 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0070934 // CRD-mediated mRNA stabilization // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070937 // CRD-mediated mRNA stability complex // not recorded /// 0070937 // CRD-mediated mRNA stability complex // inferred from sequence or structural similarity /// 0071204 // histone pre-mRNA 3'end processing complex // not recorded /// 0071204 // histone pre-mRNA 3'end processing complex // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008143 // poly(A) RNA binding // not recorded 1383052_a_at BE112093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112093 /DB_XREF=gi:8504198 /DB_XREF=UI-R-BJ1-avk-e-12-0-UI.s1 /CLONE=UI-R-BJ1-avk-e-12-0-UI /FEA=EST /CNT=1 /TID=Rn.12940.2 /TIER=ConsEnd /STK=0 /UG=Rn.12940 /UG_TITLE=ESTs, Highly similar to I48724 zinc finger protein PZF - mouse (M.musculus) BE112093 zinc finger protein 91 Zfp91 246282 NM_001169120 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1383053_x_at BE112093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112093 /DB_XREF=gi:8504198 /DB_XREF=UI-R-BJ1-avk-e-12-0-UI.s1 /CLONE=UI-R-BJ1-avk-e-12-0-UI /FEA=EST /CNT=1 /TID=Rn.12940.2 /TIER=ConsEnd /STK=0 /UG=Rn.12940 /UG_TITLE=ESTs, Highly similar to I48724 zinc finger protein PZF - mouse (M.musculus) BE112093 zinc finger protein 91 Zfp91 246282 NM_001169120 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1383054_at BE111631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111631 /DB_XREF=gi:8503736 /DB_XREF=UI-R-BJ1-avv-a-08-0-UI.s1 /CLONE=UI-R-BJ1-avv-a-08-0-UI /FEA=EST /CNT=24 /TID=Rn.12940.1 /TIER=ConsEnd /STK=0 /UG=Rn.12940 /UG_TITLE=ESTs, Highly similar to I48724 zinc finger protein PZF - mouse (M.musculus) BE111631 zinc finger protein 91 Zfp91 246282 NM_001169120 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1383055_at AW143805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143805 /DB_XREF=gi:6163704 /DB_XREF=EST294101 /CLONE=RGICA50 /FEA=EST /CNT=23 /TID=Rn.22817.1 /TIER=ConsEnd /STK=0 /UG=Rn.22817 /UG_TITLE=ESTs AW143805 1383056_a_at AI548910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548910 /DB_XREF=gi:4466398 /DB_XREF=UI-R-C3-tp-e-09-0-UI.s1 /CLONE=UI-R-C3-tp-e-09-0-UI /FEA=EST /CNT=1 /TID=Rn.12584.3 /TIER=ConsEnd /STK=1 /UG=Rn.12584 /UG_TITLE=ESTs AI548910 RGD1565210 RGD1565210 499072 XM_001071740 /// XM_574354 1383057_at BF558602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558602 /DB_XREF=gi:11668332 /DB_XREF=UI-R-E0-dj-b-12-0-UI.r1 /CLONE=UI-R-E0-dj-b-12-0-UI /FEA=EST /CNT=28 /TID=Rn.7418.2 /TIER=ConsEnd /STK=0 /UG=Rn.7418 /UG_TITLE=ESTs, Highly similar to T08661 anti-silencing protein ASF1 homolog DKFZp547E2110.1 (H.sapiens) BF558602 ASF1 anti-silencing function 1 homolog A (S. cerevisiae) Asf1a 294408 NM_001106389 0006281 // DNA repair // not recorded /// 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006334 // nucleosome assembly // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016585 // chromatin remodeling complex // not recorded 0042393 // histone binding // not recorded 1383058_at AI410438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410438 /DB_XREF=gi:4253942 /DB_XREF=EST238731 /CLONE=RHECS72 /FEA=EST /CNT=21 /TID=Rn.4287.1 /TIER=ConsEnd /STK=0 /UG=Rn.4287 /UG_TITLE=ESTs AI410438 1383059_a_at BE112067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112067 /DB_XREF=gi:8504172 /DB_XREF=UI-R-BJ1-avk-c-09-0-UI.s1 /CLONE=UI-R-BJ1-avk-c-09-0-UI /FEA=EST /CNT=21 /TID=Rn.2003.1 /TIER=ConsEnd /STK=0 /UG=Rn.2003 /UG_TITLE=ESTs BE112067 G kinase anchoring protein 1 Gkap1 361202 NM_001012160 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383060_at BE112067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112067 /DB_XREF=gi:8504172 /DB_XREF=UI-R-BJ1-avk-c-09-0-UI.s1 /CLONE=UI-R-BJ1-avk-c-09-0-UI /FEA=EST /CNT=21 /TID=Rn.2003.1 /TIER=ConsEnd /STK=0 /UG=Rn.2003 /UG_TITLE=ESTs BE112067 G kinase anchoring protein 1 Gkap1 361202 NM_001012160 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383061_at AI070680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070680 /DB_XREF=gi:3396931 /DB_XREF=UI-R-C2-mx-d-05-0-UI.s1 /CLONE=UI-R-C2-mx-d-05-0-UI /FEA=EST /CNT=24 /TID=Rn.14666.1 /TIER=ConsEnd /STK=0 /UG=Rn.14666 /UG_TITLE=ESTs AI070680 1383062_at BE105102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105102 /DB_XREF=gi:8497203 /DB_XREF=UI-R-BX0-asg-e-01-0-UI.s1 /CLONE=UI-R-BX0-asg-e-01-0-UI /FEA=EST /CNT=15 /TID=Rn.8159.1 /TIER=ConsEnd /STK=0 /UG=Rn.8159 /UG_TITLE=ESTs BE105102 1383063_a_at AI137878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137878 /DB_XREF=gi:3638655 /DB_XREF=UI-R-C0-hj-a-01-0-UI.s1 /CLONE=UI-R-C0-hj-a-01-0-UI /FEA=EST /CNT=16 /TID=Rn.22181.2 /TIER=ConsEnd /STK=0 /UG=Rn.22181 /UG_TITLE=ESTs AI137878 1383064_at AI137878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137878 /DB_XREF=gi:3638655 /DB_XREF=UI-R-C0-hj-a-01-0-UI.s1 /CLONE=UI-R-C0-hj-a-01-0-UI /FEA=EST /CNT=16 /TID=Rn.22181.2 /TIER=ConsEnd /STK=0 /UG=Rn.22181 /UG_TITLE=ESTs AI137878 1383065_at AW434166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434166 /DB_XREF=gi:6965473 /DB_XREF=UI-R-BJ0p-aft-a-02-0-UI.s1 /CLONE=UI-R-BJ0p-aft-a-02-0-UI /FEA=EST /CNT=16 /TID=Rn.8250.1 /TIER=ConsEnd /STK=0 /UG=Rn.8250 /UG_TITLE=ESTs AW434166 nicolin 1 Nicn1 619581 NM_001034999 1383066_at BG379237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379237 /DB_XREF=gi:13303709 /DB_XREF=UI-R-BT1-bnn-a-06-0-UI.s1 /CLONE=UI-R-BT1-bnn-a-06-0-UI /FEA=EST /CNT=15 /TID=Rn.13172.1 /TIER=ConsEnd /STK=0 /UG=Rn.13172 /UG_TITLE=ESTs BG379237 1383067_a_at AW141143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141143 /DB_XREF=gi:6160923 /DB_XREF=EST291179 /CLONE=RGIBD92 /FEA=EST /CNT=2 /TID=Rn.95.2 /TIER=ConsEnd /STK=0 /UG=Rn.95 /UG_TITLE=ESTs, Highly similar to KTHY MOUSE THYMIDYLATE KINASE (M.musculus) AW141143 deoxythymidylate kinase (thymidylate kinase) Dtymk 301622 NM_001106925 0006233 // dTDP biosynthetic process // inferred from electronic annotation /// 0006233 // dTDP biosynthetic process // not recorded /// 0006235 // dTTP biosynthetic process // inferred from electronic annotation /// 0009165 // nucleotide biosynthetic process // not recorded /// 0046939 // nucleotide phosphorylation // not recorded /// 0071363 // cellular response to growth factor stimulus // not recorded 0005829 // cytosol // not recorded 0004798 // thymidylate kinase activity // inferred from electronic annotation /// 0004798 // thymidylate kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0050145 // nucleoside phosphate kinase activity // not recorded 1383068_at BI290898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290898 /DB_XREF=gi:14949918 /DB_XREF=UI-R-DK0-cgi-g-12-0-UI.s1 /CLONE=UI-R-DK0-cgi-g-12-0-UI /FEA=EST /CNT=15 /TID=Rn.95.1 /TIER=ConsEnd /STK=0 /UG=Rn.95 /UG_TITLE=ESTs, Highly similar to KTHY MOUSE THYMIDYLATE KINASE (M.musculus) BI290898 deoxythymidylate kinase (thymidylate kinase) Dtymk 301622 NM_001106925 0006233 // dTDP biosynthetic process // inferred from electronic annotation /// 0006233 // dTDP biosynthetic process // not recorded /// 0006235 // dTTP biosynthetic process // inferred from electronic annotation /// 0009165 // nucleotide biosynthetic process // not recorded /// 0046939 // nucleotide phosphorylation // not recorded /// 0071363 // cellular response to growth factor stimulus // not recorded 0005829 // cytosol // not recorded 0004798 // thymidylate kinase activity // inferred from electronic annotation /// 0004798 // thymidylate kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0050145 // nucleoside phosphate kinase activity // not recorded 1383069_at AW144676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144676 /DB_XREF=gi:6164575 /DB_XREF=EST295054 /CLONE=RGICE50 /FEA=EST /CNT=13 /TID=Rn.8943.2 /TIER=ConsEnd /STK=0 /UG=Rn.8943 /UG_TITLE=ESTs AW144676 RNA binding motif, single stranded interacting protein 3 Rbms3 680726 XM_001061329 /// XM_002727143 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1383070_at AA925934 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925934 /DB_XREF=gi:4237125 /DB_XREF=UI-R-A1-es-h-11-0-UI.s1 /CLONE=UI-R-A1-es-h-11-0-UI /FEA=EST /CNT=13 /TID=Rn.8339.1 /TIER=ConsEnd /STK=0 /UG=Rn.8339 /UG_TITLE=ESTs AA925934 Fas associated factor family member 2 Faf2 291000 NM_001017445 0006986 // response to unfolded protein // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005811 // lipid particle // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383071_at BG667380 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667380 /DB_XREF=gi:13889302 /DB_XREF=DRABYF05 /CLONE=DRABYF05 /FEA=EST /CNT=12 /TID=Rn.22249.1 /TIER=ConsEnd /STK=0 /UG=Rn.22249 /UG_TITLE=ESTs BG667380 myotrophin Mtpn 79215 NM_024374 0006584 // catecholamine metabolic process // inferred from expression pattern /// 0021707 // cerebellar granule cell differentiation // inferred from expression pattern /// 0030182 // neuron differentiation // non-traceable author statement /// 0043403 // skeletal muscle tissue regeneration // inferred from expression pattern /// 0051146 // striated muscle cell differentiation // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1383072_at AW919180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919180 /DB_XREF=gi:8084971 /DB_XREF=EST350484 /CLONE=RGIFD77 /FEA=EST /CNT=12 /TID=Rn.22565.1 /TIER=ConsEnd /STK=0 /UG=Rn.22565 /UG_TITLE=ESTs, Highly similar to PHS2 RAT GLYCOGEN PHOSPHORYLASE, MUSCLE FORM (R.norvegicus) AW919180 phosphorylase, glycogen, muscle Pygm 24701 NM_012638 0001666 // response to hypoxia // inferred from direct assay /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from direct assay /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005980 // glycogen catabolic process // inferred from direct assay /// 0005980 // glycogen catabolic process // not recorded /// 0005980 // glycogen catabolic process // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from direct assay /// 0010033 // response to organic substance // inferred from direct assay /// 0051591 // response to cAMP // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0016529 // sarcoplasmic reticulum // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004645 // phosphorylase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from direct assay /// 0008144 // drug binding // inferred from direct assay /// 0008184 // glycogen phosphorylase activity // inferred from direct assay /// 0008184 // glycogen phosphorylase activity // not recorded /// 0008184 // glycogen phosphorylase activity // traceable author statement /// 0008184 // glycogen phosphorylase activity // inferred from electronic annotation /// 0016208 // AMP binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from direct assay /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred by curator 1383073_at BG666028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666028 /DB_XREF=gi:13887950 /DB_XREF=DRACMD03 /CLONE=DRACMD03 /FEA=EST /CNT=19 /TID=Rn.11790.1 /TIER=ConsEnd /STK=0 /UG=Rn.11790 /UG_TITLE=ESTs, Highly similar to G01932 queuine tRNA-ribosyltransferase (H.sapiens) BG666028 ubiquitin specific peptidase 14 Usp14 291796 NM_001008301 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0050920 // regulation of chemotaxis // not recorded /// 0061136 // regulation of proteasomal protein catabolic process // not recorded 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005737 // cytoplasm // not recorded /// 0009986 // cell surface // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0019717 // synaptosome // inferred from electronic annotation /// 0019717 // synaptosome // not recorded 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0004866 // endopeptidase inhibitor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0070628 // proteasome binding // not recorded 1383074_at H32368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H32368 /DB_XREF=gi:977785 /DB_XREF=EST107381 /CLONE=RPCBU70 /FEA=EST /CNT=15 /TID=Rn.20421.1 /TIER=ConsEnd /STK=0 /UG=Rn.20421 /UG_TITLE=ESTs, Moderately similar to ALPHA-MANNOSIDASE II (M.musculus) H32368 mannosidase, alpha, class 2A, member 1 Man2a1 25478 NM_012979 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006013 // mannose metabolic process // inferred from electronic annotation /// 0006491 // N-glycan processing // inferred from electronic annotation /// 0006491 // N-glycan processing // not recorded /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0007033 // vacuole organization // inferred from electronic annotation /// 0007033 // vacuole organization // not recorded /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // not recorded /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048286 // lung alveolus development // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0000139 // Golgi membrane // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004559 // alpha-mannosidase activity // inferred from electronic annotation /// 0004572 // mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0015923 // mannosidase activity // not recorded /// 0015923 // mannosidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0016799 // hydrolase activity, hydrolyzing N-glycosyl compounds // inferred from electronic annotation /// 0016799 // hydrolase activity, hydrolyzing N-glycosyl compounds // not recorded /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383075_at BI295861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295861 /DB_XREF=gi:14959731 /DB_XREF=UI-R-DK0-cfb-e-07-0-UI.s1 /CLONE=UI-R-DK0-cfb-e-07-0-UI /FEA=EST /CNT=12 /TID=Rn.43723.1 /TIER=ConsEnd /STK=0 /UG=Rn.43723 /UG_TITLE=ESTs BI295861 cyclin D1 Ccnd1 58919 NM_171992 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0000082 // G1/S transition of mitotic cell cycle // inferred from sequence or structural similarity /// 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000320 // re-entry into mitotic cell cycle // inferred from electronic annotation /// 0000320 // re-entry into mitotic cell cycle // not recorded /// 0001889 // liver development // inferred from expression pattern /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from sequence or structural similarity /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007595 // lactation // inferred from electronic annotation /// 0007595 // lactation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0010033 // response to organic substance // inferred from expression pattern /// 0010039 // response to iron ion // inferred from expression pattern /// 0010165 // response to X-ray // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030857 // negative regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030857 // negative regulation of epithelial cell differentiation // not recorded /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0031571 // mitotic cell cycle G1/S DNA damage checkpoint // not recorded /// 0031571 // mitotic cell cycle G1/S DNA damage checkpoint // inferred from sequence or structural similarity /// 0031571 // mitotic cell cycle G1/S DNA damage checkpoint // inferred from electronic annotation /// 0032026 // response to magnesium ion // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0033197 // response to vitamin E // inferred from expression pattern /// 0033327 // Leydig cell differentiation // inferred from mutant phenotype /// 0033598 // mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0033598 // mammary gland epithelial cell proliferation // not recorded /// 0042325 // regulation of phosphorylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045444 // fat cell differentiation // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // not recorded /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0050790 // regulation of catalytic activity // not recorded /// 0051301 // cell division // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from expression pattern /// 0051726 // regulation of cell cycle // not recorded /// 0051726 // regulation of cell cycle // traceable author statement /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060749 // mammary gland alveolus development // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // not recorded /// 0070141 // response to UV-A // inferred from electronic annotation /// 0070141 // response to UV-A // not recorded /// 0071445 // cellular response to protein stimulus // not recorded 0000307 // cyclin-dependent protein kinase holoenzyme complex // inferred from electronic annotation /// 0000307 // cyclin-dependent protein kinase holoenzyme complex // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded 0004672 // protein kinase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016538 // cyclin-dependent protein kinase regulator activity // inferred from electronic annotation /// 0016538 // cyclin-dependent protein kinase regulator activity // not recorded /// 0019899 // enzyme binding // not recorded /// 0019901 // protein kinase binding // inferred from direct assay /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1383076_at AA901203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901203 /DB_XREF=gi:4233704 /DB_XREF=UI-R-A1-dp-e-06-0-UI.s1 /CLONE=UI-R-A1-dp-e-06-0-UI /FEA=EST /CNT=12 /TID=Rn.8156.1 /TIER=ConsEnd /STK=0 /UG=Rn.8156 /UG_TITLE=ESTs AA901203 similar to RIKEN cDNA 1200016B10 RGD1308695 289088 NM_001105960 1383077_at BI287209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287209 /DB_XREF=gi:14942602 /DB_XREF=UI-R-CW0s-ccl-c-02-0-UI.s1 /CLONE=UI-R-CW0s-ccl-c-02-0-UI /FEA=EST /CNT=12 /TID=Rn.3404.2 /TIER=ConsEnd /STK=0 /UG=Rn.3404 /UG_TITLE=ESTs, Weakly similar to S54052 DOS1 protein - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BI287209 BSD domain containing 1 Bsdc1 297890 NM_001106636 0005515 // protein binding // not recorded 1383078_at BG381007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381007 /DB_XREF=gi:13305479 /DB_XREF=UI-R-CT0-bug-a-08-0-UI.s1 /CLONE=UI-R-CT0-bug-a-08-0-UI /FEA=EST /CNT=11 /TID=Rn.12171.1 /TIER=ConsEnd /STK=0 /UG=Rn.12171 /UG_TITLE=ESTs BG381007 ephrin B3 Efnb3 360546 NM_001100980 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0007628 // adult walking behavior // inferred from electronic annotation /// 0007628 // adult walking behavior // not recorded /// 0016198 // axon choice point recognition // inferred from electronic annotation /// 0016198 // axon choice point recognition // not recorded /// 0048013 // ephrin receptor signaling pathway // not recorded /// 0048013 // ephrin receptor signaling pathway // traceable author statement /// 0048013 // ephrin receptor signaling pathway // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0046875 // ephrin receptor binding // not recorded /// 0046875 // ephrin receptor binding // traceable author statement /// 0046875 // ephrin receptor binding // inferred from electronic annotation 1383079_at AW916826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916826 /DB_XREF=gi:8082668 /DB_XREF=EST348234 /CLONE=RGIDW75 /FEA=EST /CNT=17 /TID=Rn.13607.1 /TIER=ConsEnd /STK=0 /UG=Rn.13607 /UG_TITLE=ESTs, Weakly similar to S43603 RNA binding protein homolog R07E5.12 - Caenorhabditis elegans (C.elegans) AW916826 VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) Vma21 501658 XM_001067193 /// XM_577054 0070072 // vacuolar proton-transporting V-type ATPase complex assembly // not recorded 0005764 // lysosome // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0030127 // COPII vesicle coat // not recorded 1383080_at BI292252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292252 /DB_XREF=gi:14952556 /DB_XREF=UI-R-DN0-civ-c-22-0-UI.s1 /CLONE=UI-R-DN0-civ-c-22-0-UI /FEA=EST /CNT=15 /TID=Rn.4117.1 /TIER=ConsEnd /STK=0 /UG=Rn.4117 /UG_TITLE=ESTs BI292252 1383081_at BM388245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388245 /DB_XREF=gi:18188298 /DB_XREF=UI-R-DM1-cjz-g-18-0-UI.s1 /CLONE=UI-R-DM1-cjz-g-18-0-UI /FEA=EST /CNT=13 /TID=Rn.21487.2 /TIER=ConsEnd /STK=0 /UG=Rn.21487 /UG_TITLE=ESTs, Weakly similar to GMCR_MOUSE Granulocyte-macrophage colony-stimulating factor receptor alpha chain precursor (GM-CSF-R-alpha) (GMR) (M.musculus) BM388245 Similar to Protein phosphatase 2A, 59 kDa regulatory subunit B (PP2A PR59) (PP2A B-PR59) LOC682033 682033 NM_001139492 0005509 // calcium ion binding // inferred from electronic annotation 1383082_at BF522592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522592 /DB_XREF=gi:11630559 /DB_XREF=UI-R-G0-ui-g-07-0-UI.r1 /CLONE=UI-R-G0-ui-g-07-0-UI /FEA=EST /CNT=12 /TID=Rn.39006.1 /TIER=ConsEnd /STK=0 /UG=Rn.39006 /UG_TITLE=ESTs, Weakly similar to (Segment 1 of 2) XE169 PROTEIN (M.musculus) BF522592 lysine (K)-specific demethylase 5B Kdm5b 304809 NM_001107177 0034720 // histone H3-K4 demethylation // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0034647 // histone demethylase activity (H3-trimethyl-K4 specific) // not recorded /// 0034648 // histone demethylase activity (H3-dimethyl-K4 specific) // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1383083_at AI575458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575458 /DB_XREF=gi:4559834 /DB_XREF=UI-R-Y0-vg-f-08-0-UI.s1 /CLONE=UI-R-Y0-vg-f-08-0-UI /FEA=EST /CNT=12 /TID=Rn.55281.1 /TIER=ConsEnd /STK=0 /UG=Rn.55281 /UG_TITLE=ESTs, Highly similar to T46912 hypothetical protein DKFZp761H172.1 (H.sapiens) AI575458 Btg3 associated nuclear protein Banp 292064 NM_001106191 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1383084_at BG671922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671922 /DB_XREF=gi:13894021 /DB_XREF=DRNBZF07 /CLONE=DRNBZF07 /FEA=EST /CNT=11 /TID=Rn.18376.1 /TIER=ConsEnd /STK=0 /UG=Rn.18376 /UG_TITLE=ESTs BG671922 1383085_at BG672648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672648 /DB_XREF=gi:13894747 /DB_XREF=DRNCNF12 /CLONE=DRNCNF12 /FEA=EST /CNT=11 /TID=Rn.58623.1 /TIER=ConsEnd /STK=0 /UG=Rn.58623 /UG_TITLE=ESTs BG672648 SH3 domain binding glutamic acid-rich protein like Sh3bgrl 302363 NM_001173339 /// XM_001060518 /// XM_217566 1383086_at AA818256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818256 /DB_XREF=gi:4198767 /DB_XREF=UI-R-A0-ax-b-04-0-UI.s1 /CLONE=UI-R-A0-ax-b-04-0-UI /FEA=EST /CNT=11 /TID=Rn.16489.1 /TIER=ConsEnd /STK=0 /UG=Rn.16489 /UG_TITLE=ESTs AA818256 1383087_at BF409251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409251 /DB_XREF=gi:11397226 /DB_XREF=UI-R-BT1-bkn-g-12-0-UI.s1 /CLONE=UI-R-BT1-bkn-g-12-0-UI /FEA=EST /CNT=11 /TID=Rn.24085.1 /TIER=ConsEnd /STK=0 /UG=Rn.24085 /UG_TITLE=ESTs BF409251 1383088_at BF549901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549901 /DB_XREF=gi:11659631 /DB_XREF=UI-R-E0-cq-c-02-0-UI.r1 /CLONE=UI-R-E0-cq-c-02-0-UI /FEA=EST /CNT=11 /TID=Rn.22440.2 /TIER=ConsEnd /STK=0 /UG=Rn.22440 /UG_TITLE=ESTs, Weakly similar to LIPB_YEAST PROBABLE LIPOATE-PROTEIN LIGASE B, MITOCHONDRIAL PRECURSOR (LIPOATE BIOSYNTHESIS PROTEIN B) (S.cerevisiae) BF549901 lipoyl(octanoyl) transferase 2 (putative) Lipt2 365314 NM_001108917 0006464 // protein modification process // inferred from electronic annotation /// 0009107 // lipoate biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016415 // octanoyltransferase activity // inferred from electronic annotation 1383089_at BM386264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386264 /DB_XREF=gi:18186317 /DB_XREF=UI-R-CN1-cjf-o-02-0-UI.s1 /CLONE=UI-R-CN1-cjf-o-02-0-UI /FEA=EST /CNT=11 /TID=Rn.13001.1 /TIER=ConsEnd /STK=0 /UG=Rn.13001 /UG_TITLE=ESTs BM386264 RAB21, member RAS oncogene family Rab21 299799 NM_001004238 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // not recorded /// 0019003 // GDP binding // inferred from sequence or structural similarity /// 0019003 // GDP binding // inferred from electronic annotation 1383090_at BF548676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548676 /DB_XREF=gi:11639783 /DB_XREF=UI-R-A0-ad-a-08-0-UI.r1 /CLONE=UI-R-A0-ad-a-08-0-UI /FEA=EST /CNT=10 /TID=Rn.4096.1 /TIER=ConsEnd /STK=0 /UG=Rn.4096 /UG_TITLE=ESTs, Weakly similar to RT14_CAEEL PUTATIVE MITOCHONDRIAL 40S RIBOSOMAL PROTEIN S14 (C.elegans) BF548676 mitochondrial ribosomal protein S14 Mrps14 289143 NM_001105963 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383091_at BE113611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113611 /DB_XREF=gi:8505716 /DB_XREF=UI-R-BJ1-awg-c-11-0-UI.s1 /CLONE=UI-R-BJ1-awg-c-11-0-UI /FEA=EST /CNT=10 /TID=Rn.24215.2 /TIER=ConsEnd /STK=0 /UG=Rn.24215 /UG_TITLE=ESTs BE113611 amyloid beta precursor protein (cytoplasmic tail) binding protein 2 Appbp2 303396 NM_001100969 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0046907 // intracellular transport // inferred from electronic annotation /// 0046907 // intracellular transport // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383092_a_at BE115060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115060 /DB_XREF=gi:8507165 /DB_XREF=UI-R-BJ1-awu-g-07-0-UI.s1 /CLONE=UI-R-BJ1-awu-g-07-0-UI /FEA=EST /CNT=1 /TID=Rn.792.2 /TIER=ConsEnd /STK=1 /UG=Rn.792 /UG_TITLE=ESTs, Highly similar to N214_HUMAN NUCLEAR PORE COMPLEX PROTEIN NUP214 (H.sapiens) BE115060 nucleoporin 214 Nup214 296634 NM_001168559 0006406 // mRNA export from nucleus // not recorded /// 0006606 // protein import into nucleus // not recorded /// 0006611 // protein export from nucleus // not recorded /// 0051726 // regulation of cell cycle // not recorded 0005829 // cytosol // not recorded 0005487 // nucleocytoplasmic transporter activity // not recorded /// 0005515 // protein binding // not recorded 1383093_at AI029437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029437 /DB_XREF=gi:4298556 /DB_XREF=UI-R-C0-ir-d-01-0-UI.s1 /CLONE=UI-R-C0-ir-d-01-0-UI /FEA=EST /CNT=10 /TID=Rn.23488.1 /TIER=ConsEnd /STK=0 /UG=Rn.23488 /UG_TITLE=ESTs AI029437 1383094_at BI304048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI304048 /DB_XREF=gi:14980328 /DB_XREF=UI-R-DR0-cjc-k-08-0-UI.s1 /CLONE=UI-R-DR0-cjc-k-08-0-UI /FEA=EST /CNT=10 /TID=Rn.17908.1 /TIER=ConsEnd /STK=0 /UG=Rn.17908 /UG_TITLE=ESTs BI304048 1383095_at BM387808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387808 /DB_XREF=gi:18187861 /DB_XREF=UI-R-CN1-cjk-k-12-0-UI.s1 /CLONE=UI-R-CN1-cjk-k-12-0-UI /FEA=EST /CNT=10 /TID=Rn.16886.1 /TIER=ConsEnd /STK=0 /UG=Rn.16886 /UG_TITLE=ESTs BM387808 hypothetical protein LOC680155 LOC680155 680155 XM_001055921 /// XM_002725148 /// XM_002725149 /// XM_002725150 1383096_at AI235240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235240 /DB_XREF=gi:3828746 /DB_XREF=EST231802 /CLONE=ROVCP28 /FEA=EST /CNT=10 /TID=Rn.22130.1 /TIER=ConsEnd /STK=0 /UG=Rn.22130 /LL=25382 /UG_GENE=Aplp2 /UG_TITLE=Amyloid protein precursor-like protein 2 AI235240 amyloid beta (A4) precursor-like protein 2-like LOC100363366 100363366 XM_002729883 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1383097_at BG668881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668881 /DB_XREF=gi:13890803 /DB_XREF=DRN02G02 /CLONE=DRN02G02 /FEA=EST /CNT=10 /TID=Rn.17642.1 /TIER=ConsEnd /STK=0 /UG=Rn.17642 /UG_TITLE=ESTs BG668881 similar to RIKEN cDNA 2010012O05 RGD1311783 294012 NM_001134509 1383098_at BG667845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667845 /DB_XREF=gi:13889767 /DB_XREF=DRABNC12 /CLONE=DRABNC12 /FEA=EST /CNT=12 /TID=Rn.22797.1 /TIER=ConsEnd /STK=0 /UG=Rn.22797 /UG_TITLE=ESTs BG667845 forty-two-three domain containing 1 Fyttd1 360726 NM_001047899 0006406 // mRNA export from nucleus // not recorded /// 0006406 // mRNA export from nucleus // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005654 // nucleoplasm // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded /// 0016607 // nuclear speck // inferred from sequence or structural similarity /// 0016607 // nuclear speck // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0003729 // mRNA binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded 1383099_at BG670905 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670905 /DB_XREF=gi:13893004 /DB_XREF=DRNBID05 /CLONE=DRNBID05 /FEA=EST /CNT=12 /TID=Rn.44919.1 /TIER=ConsEnd /STK=0 /UG=Rn.44919 /UG_TITLE=ESTs, Highly similar to T47146 hypothetical protein DKFZp761C169.1 (H.sapiens) BG670905 GC-rich promoter binding protein 1 Gpbp1 294734 NM_001106410 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded 1383100_at AI070897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070897 /DB_XREF=gi:3397148 /DB_XREF=UI-R-C2-mt-a-06-0-UI.s1 /CLONE=UI-R-C2-mt-a-06-0-UI /FEA=EST /CNT=12 /TID=Rn.30869.1 /TIER=ConsEnd /STK=0 /UG=Rn.30869 /UG_TITLE=ESTs AI070897 family with sequence similarity 18, member B2 Fam18b2 687358 NM_001107568 0016021 // integral to membrane // inferred from electronic annotation 1383101_at BF556463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556463 /DB_XREF=gi:11666193 /DB_XREF=UI-R-E1-fj-b-10-0-UI.r1 /CLONE=UI-R-E1-fj-b-10-0-UI /FEA=EST /CNT=11 /TID=Rn.9112.1 /TIER=ConsEnd /STK=0 /UG=Rn.9112 /UG_TITLE=ESTs BF556463 anaphase promoting complex subunit 10 Anapc10 361389 NM_001108445 0030071 // regulation of mitotic metaphase/anaphase transition // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070979 // protein K11-linked ubiquitination // inferred from electronic annotation /// 0070979 // protein K11-linked ubiquitination // not recorded 0005654 // nucleoplasm // not recorded /// 0005680 // anaphase-promoting complex // inferred from electronic annotation /// 0005680 // anaphase-promoting complex // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation 1383102_at BE111057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111057 /DB_XREF=gi:8503162 /DB_XREF=UI-R-BJ1-auz-b-07-0-UI.s1 /CLONE=UI-R-BJ1-auz-b-07-0-UI /FEA=EST /CNT=11 /TID=Rn.11427.2 /TIER=ConsEnd /STK=0 /UG=Rn.11427 /UG_TITLE=ESTs BE111057 1383103_at BE110514 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110514 /DB_XREF=gi:8502619 /DB_XREF=UI-R-BJ1-auo-h-07-0-UI.s1 /CLONE=UI-R-BJ1-auo-h-07-0-UI /FEA=EST /CNT=11 /TID=Rn.6697.1 /TIER=ConsEnd /STK=0 /UG=Rn.6697 /UG_TITLE=ESTs BE110514 family with sequence similarity 172, member A Fam172a 294606 NM_001106401 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded 1383104_at BI295116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295116 /DB_XREF=gi:14958240 /DB_XREF=UI-R-DK0-ceg-a-03-0-UI.s1 /CLONE=UI-R-DK0-ceg-a-03-0-UI /FEA=EST /CNT=11 /TID=Rn.19052.1 /TIER=ConsEnd /STK=0 /UG=Rn.19052 /UG_TITLE=ESTs BI295116 similar to RIKEN cDNA 1810020D17 RGD1561459 361606 NM_001108493 1383105_at BI293339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293339 /DB_XREF=gi:14954746 /DB_XREF=UI-R-DK0-cdn-h-04-0-UI.s1 /CLONE=UI-R-DK0-cdn-h-04-0-UI /FEA=EST /CNT=11 /TID=Rn.15087.1 /TIER=ConsEnd /STK=0 /UG=Rn.15087 /UG_TITLE=ESTs BI293339 rCG26214-like LOC100365845 100365845 XM_002726181 1383106_at BI295890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295890 /DB_XREF=gi:14959789 /DB_XREF=UI-R-DK0-cfb-h-12-0-UI.s1 /CLONE=UI-R-DK0-cfb-h-12-0-UI /FEA=EST /CNT=10 /TID=Rn.2970.1 /TIER=ConsEnd /STK=0 /UG=Rn.2970 /UG_TITLE=ESTs, Highly similar to CUL2_HUMAN CULLIN HOMOLOG 2 (H.sapiens) BI295890 cullin 2 Cul2 361258 NM_001108417 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0030163 // protein catabolic process // not recorded 0030891 // VCB complex // inferred from direct assay /// 0031461 // cullin-RING ubiquitin ligase complex // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred by curator /// 0005515 // protein binding // inferred by curator /// 0005515 // protein binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation 1383107_at BG670306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670306 /DB_XREF=gi:13892405 /DB_XREF=DRNADA07 /CLONE=DRNADA07 /FEA=EST /CNT=10 /TID=Rn.18606.2 /TIER=ConsEnd /STK=0 /UG=Rn.18606 /UG_TITLE=ESTs, Highly similar to SMD1_HUMAN SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1 (M.musculus) BG670306 small nuclear ribonucleoprotein D1 Snrpd1 291794 NM_001106163 0000387 // spliceosomal snRNP assembly // not recorded /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383108_at BE120513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120513 /DB_XREF=gi:8512618 /DB_XREF=UI-R-CA0-bat-d-02-0-UI.s1 /CLONE=UI-R-CA0-bat-d-02-0-UI /FEA=EST /CNT=10 /TID=Rn.49297.1 /TIER=ConsEnd /STK=0 /UG=Rn.49297 /UG_TITLE=ESTs, Highly similar to A Chain A, Htafii18HTAFII28 HETERODIMER CRYSTAL STRUCTURE {SUB 31-75 (H.sapiens) BE120513 TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor Taf13 310784 NM_001107716 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005669 // transcription factor TFIID complex // inferred from electronic annotation /// 0005669 // transcription factor TFIID complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded 1383109_at BG669807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669807 /DB_XREF=gi:13891729 /DB_XREF=DRNAAKE04 /CLONE=DRNAAKE04 /FEA=EST /CNT=10 /TID=Rn.12346.1 /TIER=ConsEnd /STK=0 /UG=Rn.12346 /UG_TITLE=ESTs, Highly similar to PRCC_HUMAN PROLINE-RICH PROTEIN PRCC (H.sapiens) BG669807 papillary renal cell carcinoma (translocation-associated) Prcc 310687 NM_001107700 1383110_at BM385908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385908 /DB_XREF=gi:18185961 /DB_XREF=UI-R-DM1-cke-p-16-0-UI.s1 /CLONE=UI-R-DM1-cke-p-16-0-UI /FEA=EST /CNT=10 /TID=Rn.22224.1 /TIER=ConsEnd /STK=0 /UG=Rn.22224 /UG_TITLE=ESTs BM385908 kelch-like 24 (Drosophila) Klhl24 303803 NM_181473 0005737 // cytoplasm // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043204 // perikaryon // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1383111_at AI058895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058895 /DB_XREF=gi:3332672 /DB_XREF=UI-R-C1-ks-a-03-0-UI.s1 /CLONE=UI-R-C1-ks-a-03-0-UI /FEA=EST /CNT=10 /TID=Rn.19014.1 /TIER=ConsEnd /STK=0 /UG=Rn.19014 /UG_TITLE=ESTs AI058895 1383112_at BF550315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550315 /DB_XREF=gi:11660045 /DB_XREF=UI-R-E0-ce-c-11-0-UI.r1 /CLONE=UI-R-E0-ce-c-11-0-UI /FEA=EST /CNT=9 /TID=Rn.22907.1 /TIER=ConsEnd /STK=0 /UG=Rn.22907 /UG_TITLE=ESTs BF550315 trichorhinophalangeal syndrome I homolog (human) Trps1 299897 NM_001134837 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383113_at AW523077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523077 /DB_XREF=gi:7165462 /DB_XREF=UI-R-BO0-ahq-a-10-0-UI.s1 /CLONE=UI-R-BO0-ahq-a-10-0-UI /FEA=EST /CNT=9 /TID=Rn.25304.1 /TIER=ConsEnd /STK=0 /UG=Rn.25304 /UG_TITLE=ESTs AW523077 1383114_at BI296782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296782 /DB_XREF=gi:14961551 /DB_XREF=UI-R-DK0-cfz-c-05-0-UI.s1 /CLONE=UI-R-DK0-cfz-c-05-0-UI /FEA=EST /CNT=9 /TID=Rn.22821.1 /TIER=ConsEnd /STK=0 /UG=Rn.22821 /UG_TITLE=ESTs BI296782 1383115_at AW522557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522557 /DB_XREF=gi:7164942 /DB_XREF=UI-R-BO0-ahd-a-08-0-UI.s1 /CLONE=UI-R-BO0-ahd-a-08-0-UI /FEA=EST /CNT=9 /TID=Rn.1661.1 /TIER=ConsEnd /STK=0 /UG=Rn.1661 /UG_TITLE=ESTs AW522557 cleavage stimulation factor, 3' pre-RNA subunit 2, tau Cstf2t 309338 NM_001107586 0005622 // intracellular // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded 1383116_at BI298383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298383 /DB_XREF=gi:14974663 /DB_XREF=UI-R-CV2-cho-f-08-0-UI.s1 /CLONE=UI-R-CV2-cho-f-08-0-UI /FEA=EST /CNT=9 /TID=Rn.23463.1 /TIER=ConsEnd /STK=0 /UG=Rn.23463 /UG_TITLE=ESTs, Weakly similar to R10D12.12.p (Caenorhabditis elegans) (C.elegans) BI298383 asparagine-linked glycosylation 13 homolog (S. cerevisiae) Alg13 300284 NM_001013951 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0030259 // lipid glycosylation // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation 0004577 // N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation 1383117_at AI232414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232414 /DB_XREF=gi:3816294 /DB_XREF=EST229102 /CLONE=RKICB41 /FEA=EST /CNT=9 /TID=Rn.7752.1 /TIER=ConsEnd /STK=0 /UG=Rn.7752 /UG_TITLE=ESTs, Moderately similar to AF072864 1 peroxisomal membrane protein PMP 24 (H.sapiens) AI232414 peroxisomal membrane protein 4 Pxmp4 282634 NM_172223 0005777 // peroxisome // inferred from electronic annotation /// 0005777 // peroxisome // not recorded /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1383118_at BI288120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288120 /DB_XREF=gi:14944391 /DB_XREF=UI-R-DK0-cdc-b-11-0-UI.s1 /CLONE=UI-R-DK0-cdc-b-11-0-UI /FEA=EST /CNT=9 /TID=Rn.58728.1 /TIER=ConsEnd /STK=0 /UG=Rn.58728 /UG_TITLE=ESTs BI288120 transmembrane protein 209 Tmem209 312200 NM_001014055 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1383119_at BF554283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554283 /DB_XREF=gi:11664013 /DB_XREF=UI-R-C1-kg-a-06-0-UI.r1 /CLONE=UI-R-C1-kg-a-06-0-UI /FEA=EST /CNT=9 /TID=Rn.1511.1 /TIER=ConsEnd /STK=0 /UG=Rn.1511 /UG_TITLE=ESTs BF554283 opioid growth factor receptor-like 1 Ogfrl1 316290 NM_001025708 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1383120_at BE107993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107993 /DB_XREF=gi:8500098 /DB_XREF=UI-R-CA0-awz-b-11-0-UI.s1 /CLONE=UI-R-CA0-awz-b-11-0-UI /FEA=EST /CNT=9 /TID=Rn.12355.1 /TIER=ConsEnd /STK=0 /UG=Rn.12355 /UG_TITLE=ESTs BE107993 1383121_at BM384218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384218 /DB_XREF=gi:18184271 /DB_XREF=UI-R-DZ0-cks-p-20-0-UI.s1 /CLONE=UI-R-DZ0-cks-p-20-0-UI /FEA=EST /CNT=9 /TID=Rn.22274.1 /TIER=ConsEnd /STK=0 /UG=Rn.22274 /UG_TITLE=ESTs BM384218 1383122_at BF415760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415760 /DB_XREF=gi:11403749 /DB_XREF=UI-R-CA0-bke-d-11-0-UI.s1 /CLONE=UI-R-CA0-bke-d-11-0-UI /FEA=EST /CNT=9 /TID=Rn.49300.1 /TIER=ConsEnd /STK=0 /UG=Rn.49300 /UG_TITLE=ESTs, Moderately similar to AAKG RAT 5-AMP-ACTIVATED PROTEIN KINASE, GAMMA-1 SUBUNIT (R.norvegicus) BF415760 protein kinase, AMP-activated, gamma 2 non-catalytic subunit Prkag2 373545 NM_184051 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // not recorded /// 0006110 // regulation of glycolysis // inferred from electronic annotation /// 0006110 // regulation of glycolysis // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0010800 // positive regulation of peptidyl-threonine phosphorylation // inferred from electronic annotation /// 0010800 // positive regulation of peptidyl-threonine phosphorylation // not recorded /// 0019217 // regulation of fatty acid metabolic process // inferred from electronic annotation /// 0019217 // regulation of fatty acid metabolic process // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0046320 // regulation of fatty acid oxidation // not recorded /// 0050790 // regulation of catalytic activity // inferred from direct assay 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0031588 // AMP-activated protein kinase complex // inferred from direct assay /// 0031588 // AMP-activated protein kinase complex // inferred from mutant phenotype /// 0031588 // AMP-activated protein kinase complex // not recorded /// 0031588 // AMP-activated protein kinase complex // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004679 // AMP-activated protein kinase activity // inferred from direct assay /// 0004679 // AMP-activated protein kinase activity // inferred from mutant phenotype /// 0004862 // cAMP-dependent protein kinase inhibitor activity // inferred from electronic annotation /// 0004862 // cAMP-dependent protein kinase inhibitor activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from electronic annotation /// 0008603 // cAMP-dependent protein kinase regulator activity // not recorded /// 0008607 // phosphorylase kinase regulator activity // inferred from electronic annotation /// 0008607 // phosphorylase kinase regulator activity // not recorded /// 0016208 // AMP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0030295 // protein kinase activator activity // inferred from electronic annotation /// 0030295 // protein kinase activator activity // not recorded /// 0043531 // ADP binding // inferred from electronic annotation /// 0043531 // ADP binding // not recorded 1383123_at BF559503 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559503 /DB_XREF=gi:11669233 /DB_XREF=UI-R-E0-cm-e-04-0-UI.r1 /CLONE=UI-R-E0-cm-e-04-0-UI /FEA=EST /CNT=9 /TID=Rn.15050.1 /TIER=ConsEnd /STK=0 /UG=Rn.15050 /UG_TITLE=ESTs BF559503 1383124_at BG672201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672201 /DB_XREF=gi:13894300 /DB_XREF=DRNCDD07 /CLONE=DRNCDD07 /FEA=EST /CNT=9 /TID=Rn.23643.1 /TIER=ConsEnd /STK=0 /UG=Rn.23643 /UG_TITLE=ESTs BG672201 1383125_at AW525401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525401 /DB_XREF=gi:7167786 /DB_XREF=UI-R-BJ0p-ait-c-04-0-UI.s1 /CLONE=UI-R-BJ0p-ait-c-04-0-UI /FEA=EST /CNT=9 /TID=Rn.13639.1 /TIER=ConsEnd /STK=0 /UG=Rn.13639 /UG_TITLE=ESTs, Weakly similar to S37744 endo-exonuclease yNucR - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AW525401 TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) Trmt2a 287953 NM_001011895 0006396 // RNA processing // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008173 // RNA methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1383126_at AA998057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998057 /DB_XREF=gi:4287214 /DB_XREF=UI-R-C0-id-b-01-0-UI.s1 /CLONE=UI-R-C0-id-b-01-0-UI /FEA=EST /CNT=9 /TID=Rn.6217.1 /TIER=ConsEnd /STK=0 /UG=Rn.6217 /UG_TITLE=ESTs AA998057 V-akt murine thymoma viral oncogene homolog 1 Akt1 24185 NM_033230 0000060 // protein import into nucleus, translocation // inferred from electronic annotation /// 0000060 // protein import into nucleus, translocation // not recorded /// 0001893 // maternal placenta development // inferred from electronic annotation /// 0001893 // maternal placenta development // not recorded /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // not recorded /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005978 // glycogen biosynthetic process // inferred from mutant phenotype /// 0005978 // glycogen biosynthetic process // inferred from electronic annotation /// 0005979 // regulation of glycogen biosynthetic process // not recorded /// 0005979 // regulation of glycogen biosynthetic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006412 // translation // inferred from mutant phenotype /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from direct assay /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0006916 // anti-apoptosis // traceable author statement /// 0006924 // activation-induced cell death of T cells // inferred from electronic annotation /// 0006924 // activation-induced cell death of T cells // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0007165 // signal transduction // inferred from direct assay /// 0007281 // germ cell development // inferred from electronic annotation /// 0007281 // germ cell development // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // inferred from mutant phenotype /// 0008286 // insulin receptor signaling pathway // not recorded /// 0008286 // insulin receptor signaling pathway // inferred from sequence or structural similarity /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0008637 // apoptotic mitochondrial changes // inferred from electronic annotation /// 0008637 // apoptotic mitochondrial changes // not recorded /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from electronic annotation /// 0009725 // response to hormone stimulus // not recorded /// 0010748 // negative regulation of plasma membrane long-chain fatty acid transport // inferred from electronic annotation /// 0010748 // negative regulation of plasma membrane long-chain fatty acid transport // not recorded /// 0010765 // positive regulation of sodium ion transport // inferred from electronic annotation /// 0010765 // positive regulation of sodium ion transport // not recorded /// 0010907 // positive regulation of glucose metabolic process // inferred from electronic annotation /// 0010907 // positive regulation of glucose metabolic process // not recorded /// 0010975 // regulation of neuron projection development // not recorded /// 0010975 // regulation of neuron projection development // inferred from sequence or structural similarity /// 0010975 // regulation of neuron projection development // inferred from electronic annotation /// 0015758 // glucose transport // inferred from electronic annotation /// 0015758 // glucose transport // not recorded /// 0016310 // phosphorylation // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0018105 // peptidyl-serine phosphorylation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // not recorded /// 0030030 // cell projection organization // inferred from direct assay /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0030163 // protein catabolic process // not recorded /// 0030307 // positive regulation of cell growth // inferred from direct assay /// 0030307 // positive regulation of cell growth // not recorded /// 0030307 // positive regulation of cell growth // inferred from electronic annotation /// 0030334 // regulation of cell migration // inferred from mutant phenotype /// 0031659 // positive regulation of cyclin-dependent protein kinase activity involved in G1/S // inferred from electronic annotation /// 0031659 // positive regulation of cyclin-dependent protein kinase activity involved in G1/S // not recorded /// 0031999 // negative regulation of fatty acid beta-oxidation // inferred from electronic annotation /// 0031999 // negative regulation of fatty acid beta-oxidation // not recorded /// 0032094 // response to food // inferred from electronic annotation /// 0032094 // response to food // not recorded /// 0032270 // positive regulation of cellular protein metabolic process // inferred from mutant phenotype /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from mutant phenotype /// 0032869 // cellular response to insulin stimulus // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0032880 // regulation of protein localization // inferred from electronic annotation /// 0032880 // regulation of protein localization // not recorded /// 0034405 // response to fluid shear stress // inferred from electronic annotation /// 0034405 // response to fluid shear stress // not recorded /// 0042640 // anagen // inferred from electronic annotation /// 0042640 // anagen // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043491 // protein kinase B signaling cascade // inferred from electronic annotation /// 0043491 // protein kinase B signaling cascade // not recorded /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045429 // positive regulation of nitric oxide biosynthetic process // not recorded /// 0045600 // positive regulation of fat cell differentiation // inferred from electronic annotation /// 0045600 // positive regulation of fat cell differentiation // not recorded /// 0045725 // positive regulation of glycogen biosynthetic process // inferred from electronic annotation /// 0045725 // positive regulation of glycogen biosynthetic process // not recorded /// 0045792 // negative regulation of cell size // inferred from direct assay /// 0045884 // regulation of survival gene product expression // inferred from electronic annotation /// 0045884 // regulation of survival gene product expression // not recorded /// 0046326 // positive regulation of glucose import // inferred from electronic annotation /// 0046326 // positive regulation of glucose import // not recorded /// 0046329 // negative regulation of JNK cascade // inferred from direct assay /// 0046889 // positive regulation of lipid biosynthetic process // inferred from electronic annotation /// 0046889 // positive regulation of lipid biosynthetic process // not recorded /// 0048009 // insulin-like growth factor receptor signaling pathway // not recorded /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0048009 // insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0051000 // positive regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051000 // positive regulation of nitric-oxide synthase activity // not recorded /// 0060709 // glycogen cell development involved in embryonic placenta development // inferred from electronic annotation /// 0060709 // glycogen cell development involved in embryonic placenta development // not recorded /// 0060716 // labyrinthine layer blood vessel development // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // not recorded /// 0070141 // response to UV-A // inferred from electronic annotation /// 0070141 // response to UV-A // not recorded /// 0090004 // positive regulation of establishment of protein localization in plasma membrane // inferred from electronic annotation /// 0090004 // positive regulation of establishment of protein localization in plasma membrane // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005819 // spindle // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0015630 // microtubule cytoskeleton // not recorded /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from electronic annotation /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // not recorded /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0030235 // nitric-oxide synthase regulator activity // inferred from electronic annotation /// 0030235 // nitric-oxide synthase regulator activity // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // inferred from electronic annotation /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // not recorded 1383127_at BI295823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295823 /DB_XREF=gi:14959656 /DB_XREF=UI-R-DK0-cfb-a-11-0-UI.s1 /CLONE=UI-R-DK0-cfb-a-11-0-UI /FEA=EST /CNT=9 /TID=Rn.36437.2 /TIER=ConsEnd /STK=0 /UG=Rn.36437 /UG_TITLE=ESTs BI295823 1383128_at AW921382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921382 /DB_XREF=gi:8087206 /DB_XREF=EST352686 /CLONE=RGIHT25 /FEA=EST /CNT=20 /TID=Rn.36609.1 /TIER=ConsEnd /STK=0 /UG=Rn.36609 /UG_TITLE=ESTs AW921382 1383129_at AI072254 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072254 /DB_XREF=gi:3398448 /DB_XREF=UI-R-C2-ne-a-02-0-UI.s1 /CLONE=UI-R-C2-ne-a-02-0-UI /FEA=EST /CNT=19 /TID=Rn.1126.1 /TIER=ConsEnd /STK=0 /UG=Rn.1126 /UG_TITLE=ESTs AI072254 G protein-coupled receptor 177 Gpr177 362065 NM_001085353 /// NM_199408 0001707 // mesoderm formation // inferred from electronic annotation /// 0001707 // mesoderm formation // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009948 // anterior/posterior axis specification // inferred from electronic annotation /// 0009948 // anterior/posterior axis specification // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017147 // Wnt-protein binding // inferred from electronic annotation /// 0017147 // Wnt-protein binding // not recorded 1383130_at BF555795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555795 /DB_XREF=gi:11665525 /DB_XREF=UI-R-A1-ei-h-09-0-UI.r1 /CLONE=UI-R-A1-ei-h-09-0-UI /FEA=EST /CNT=13 /TID=Rn.8487.1 /TIER=ConsEnd /STK=0 /UG=Rn.8487 /UG_TITLE=ESTs BF555795 ataxin 2 binding protein 1 A2bp1 302920 NM_001106974 0005737 // cytoplasm // not recorded /// 0005802 // trans-Golgi network // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded 1383131_at AI177292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177292 /DB_XREF=gi:3727930 /DB_XREF=EST220909 /CLONE=RPLBX05 /FEA=EST /CNT=12 /TID=Rn.42962.1 /TIER=ConsEnd /STK=0 /UG=Rn.42962 /UG_TITLE=ESTs, Weakly similar to FIBRONECTIN RECEPTOR BETA SUBUNIT PRECURSOR (R.norvegicus) AI177292 integrin, beta 2 Itgb2 309684 NM_001037780 0002523 // leukocyte migration involved in inflammatory response // inferred from mutant phenotype /// 0007155 // cell adhesion // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007159 // leukocyte cell-cell adhesion // inferred from mutant phenotype /// 0007159 // leukocyte cell-cell adhesion // not recorded /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016337 // cell-cell adhesion // inferred from mutant phenotype /// 0030101 // natural killer cell activation // inferred from mutant phenotype /// 0030593 // neutrophil chemotaxis // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // not recorded /// 0043542 // endothelial cell migration // inferred from mutant phenotype /// 0045123 // cellular extravasation // inferred from mutant phenotype /// 0045123 // cellular extravasation // not recorded /// 0045123 // cellular extravasation // inferred from electronic annotation /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from mutant phenotype /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050798 // activated T cell proliferation // inferred from electronic annotation /// 0050798 // activated T cell proliferation // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0008305 // integrin complex // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded 0001948 // glycoprotein binding // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0050839 // cell adhesion molecule binding // inferred from mutant phenotype 1383132_at BG377939 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377939 /DB_XREF=gi:13302411 /DB_XREF=UI-R-CU0-bvh-a-01-0-UI.s1 /CLONE=UI-R-CU0-bvh-a-01-0-UI /FEA=EST /CNT=11 /TID=Rn.18670.1 /TIER=ConsEnd /STK=0 /UG=Rn.18670 /UG_TITLE=ESTs BG377939 leucine zipper and CTNNBIP1 domain containing Lzic 366507 NM_001013241 0010212 // response to ionizing radiation // inferred from expression pattern 0008013 // beta-catenin binding // inferred from electronic annotation 1383133_at BI295765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295765 /DB_XREF=gi:14959540 /DB_XREF=UI-R-DK0-cfa-d-04-0-UI.s1 /CLONE=UI-R-DK0-cfa-d-04-0-UI /FEA=EST /CNT=11 /TID=Rn.18130.1 /TIER=ConsEnd /STK=0 /UG=Rn.18130 /UG_TITLE=ESTs BI295765 1383134_at AW918808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918808 /DB_XREF=gi:8084593 /DB_XREF=EST350112 /CLONE=RGIEY59 /FEA=EST /CNT=10 /TID=Rn.32513.3 /TIER=ConsEnd /STK=0 /UG=Rn.32513 /UG_TITLE=ESTs AW918808 similar to hypothetical protein FLJ12118 RGD1311612 361184 NM_001177684 /// XM_001076059 /// XM_002728438 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006423 // cysteinyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004817 // cysteine-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1383135_at BG669126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669126 /DB_XREF=gi:13891033 /DB_XREF=DRN05F10 /CLONE=DRN05F10 /FEA=EST /CNT=10 /TID=Rn.7378.1 /TIER=ConsEnd /STK=0 /UG=Rn.7378 /UG_TITLE=ESTs BG669126 1383136_a_at AI764288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764288 /DB_XREF=gi:5210223 /DB_XREF=UI-R-Y0-acx-b-05-0-UI.s1 /CLONE=UI-R-Y0-acx-b-05-0-UI /FEA=EST /CNT=10 /TID=Rn.12169.1 /TIER=ConsEnd /STK=0 /UG=Rn.12169 /UG_TITLE=ESTs AI764288 1383137_at AA956294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956294 /DB_XREF=gi:4238688 /DB_XREF=UI-R-E1-fh-g-01-0-UI.s1 /CLONE=UI-R-E1-fh-g-01-0-UI /FEA=EST /CNT=10 /TID=Rn.8637.1 /TIER=ConsEnd /STK=0 /UG=Rn.8637 /UG_TITLE=ESTs AA956294 SRY (sex determining region Y)-box 4 Sox4 364712 XM_001068302 /// XM_344594 0001666 // response to hypoxia // inferred from direct assay /// 0002328 // pro-B cell differentiation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007507 // heart development // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0030217 // T cell differentiation // not recorded /// 0031017 // exocrine pancreas development // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0050821 // protein stabilization // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded 1383138_at AI578268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578268 /DB_XREF=gi:4562644 /DB_XREF=UI-R-G0-ui-f-12-0-UI.s2 /CLONE=UI-R-G0-ui-f-12-0-UI /FEA=EST /CNT=10 /TID=Rn.12068.1 /TIER=ConsEnd /STK=0 /UG=Rn.12068 /UG_TITLE=ESTs AI578268 slingshot homolog 3 (Drosophila) Ssh3 365396 NM_001012217 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1383139_at BM386881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386881 /DB_XREF=gi:18186934 /DB_XREF=UI-R-CN1-cjh-f-08-0-UI.s1 /CLONE=UI-R-CN1-cjh-f-08-0-UI /FEA=EST /CNT=10 /TID=Rn.11887.1 /TIER=ConsEnd /STK=0 /UG=Rn.11887 /UG_TITLE=ESTs BM386881 1383140_at BG665046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665046 /DB_XREF=gi:13886968 /DB_XREF=DRABXF04 /CLONE=DRABXF04 /FEA=EST /CNT=9 /TID=Rn.66831.1 /TIER=ConsEnd /STK=0 /UG=Rn.66831 /UG_TITLE=ESTs BG665046 sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2 Spock2 361840 NM_001108533 0005509 // calcium ion binding // inferred from electronic annotation 1383141_a_at AI236700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236700 /DB_XREF=gi:3830206 /DB_XREF=EST233262 /CLONE=ROVDJ48 /FEA=EST /CNT=1 /TID=Rn.24460.2 /TIER=ConsEnd /STK=1 /UG=Rn.24460 /UG_TITLE=ESTs, Weakly similar to S57447 HPBRII-7 protein (H.sapiens) AI236700 cleavage and polyadenylation specific factor 7, 59kDa Cpsf7 365407 NM_001014245 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383142_at BI289244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289244 /DB_XREF=gi:14946612 /DB_XREF=UI-R-DK0-cfj-g-04-0-UI.s1 /CLONE=UI-R-DK0-cfj-g-04-0-UI /FEA=EST /CNT=9 /TID=Rn.23695.1 /TIER=ConsEnd /STK=0 /UG=Rn.23695 /UG_TITLE=ESTs BI289244 kelch-like 26 (Drosophila) Klhl26 290657 NM_001106075 0005515 // protein binding // inferred from electronic annotation 1383143_at BF549473 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549473 /DB_XREF=gi:11659245 /DB_XREF=UI-R-C2-mv-e-03-0-UI.r1 /CLONE=UI-R-C2-mv-e-03-0-UI /FEA=EST /CNT=9 /TID=Rn.20124.1 /TIER=ConsEnd /STK=0 /UG=Rn.20124 /UG_TITLE=ESTs BF549473 Eph receptor B2 Ephb2 313633 NM_001127319 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0007612 // learning // inferred from electronic annotation /// 0007612 // learning // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0016310 // phosphorylation // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0021631 // optic nerve morphogenesis // inferred from electronic annotation /// 0021631 // optic nerve morphogenesis // not recorded /// 0021952 // central nervous system projection neuron axonogenesis // inferred from electronic annotation /// 0021952 // central nervous system projection neuron axonogenesis // not recorded /// 0031290 // retinal ganglion cell axon guidance // inferred from electronic annotation /// 0031290 // retinal ganglion cell axon guidance // not recorded /// 0048013 // ephrin receptor signaling pathway // inferred from electronic annotation /// 0048013 // ephrin receptor signaling pathway // not recorded /// 0048168 // regulation of neuronal synaptic plasticity // inferred from electronic annotation /// 0048168 // regulation of neuronal synaptic plasticity // not recorded /// 0048170 // positive regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048170 // positive regulation of long-term neuronal synaptic plasticity // not recorded /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // not recorded /// 0050770 // regulation of axonogenesis // not recorded /// 0050770 // regulation of axonogenesis // inferred from electronic annotation /// 0050771 // negative regulation of axonogenesis // inferred from electronic annotation /// 0050771 // negative regulation of axonogenesis // not recorded 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // not recorded /// 0005003 // ephrin receptor activity // inferred from electronic annotation /// 0005003 // ephrin receptor activity // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008046 // axon guidance receptor activity // inferred from electronic annotation /// 0008046 // axon guidance receptor activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1383144_at AI454550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454550 /DB_XREF=gi:4294511 /DB_XREF=UI-R-BT0-pw-d-04-0-UI.s1 /CLONE=UI-R-BT0-pw-d-04-0-UI /FEA=EST /CNT=9 /TID=Rn.36161.1 /TIER=ConsEnd /STK=0 /UG=Rn.36161 /UG_TITLE=ESTs AI454550 tRNA nucleotidyl transferase, CCA-adding, 1 Trnt1 312616 NM_001024261 0006396 // RNA processing // inferred from electronic annotation /// 0042780 // tRNA 3'-end processing // inferred from electronic annotation /// 0042780 // tRNA 3'-end processing // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000049 // tRNA binding // inferred from electronic annotation /// 0000049 // tRNA binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0004810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 0004810 // tRNA adenylyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1383145_at BF283924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283924 /DB_XREF=gi:11214994 /DB_XREF=EST448515 /CLONE=RGIEJ06 /FEA=EST /CNT=9 /TID=Rn.19784.1 /TIER=ConsEnd /STK=0 /UG=Rn.19784 /UG_TITLE=ESTs BF283924 lysosomal-associated membrane protein 3 Lamp3 303801 NM_001012015 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005765 // lysosomal membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1383146_at BM388077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388077 /DB_XREF=gi:18188130 /DB_XREF=UI-R-DM1-cjz-b-21-0-UI.s1 /CLONE=UI-R-DM1-cjz-b-21-0-UI /FEA=EST /CNT=9 /TID=Rn.9376.1 /TIER=ConsEnd /STK=0 /UG=Rn.9376 /UG_TITLE=ESTs BM388077 similar to neurobeachin RGD1562629 361948 XR_085753 /// XR_086168 1383147_at AW526373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526373 /DB_XREF=gi:7168758 /DB_XREF=UI-R-BO1-ajb-d-05-0-UI.s1 /CLONE=UI-R-BO1-ajb-d-05-0-UI /FEA=EST /CNT=9 /TID=Rn.22200.1 /TIER=ConsEnd /STK=0 /UG=Rn.22200 /UG_TITLE=ESTs AW526373 1383148_at BF559410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559410 /DB_XREF=gi:11669188 /DB_XREF=UI-R-E0-ck-c-03-0-UI.r1 /CLONE=UI-R-E0-ck-c-03-0-UI /FEA=EST /CNT=9 /TID=Rn.24782.1 /TIER=ConsEnd /STK=0 /UG=Rn.24782 /UG_TITLE=ESTs BF559410 1383149_at AA964466 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964466 /DB_XREF=gi:4279340 /DB_XREF=UI-R-E1-go-f-02-0-UI.s1 /CLONE=UI-R-E1-go-f-02-0-UI /FEA=EST /CNT=9 /TID=Rn.22065.1 /TIER=ConsEnd /STK=0 /UG=Rn.22065 /UG_TITLE=ESTs AA964466 similar to development and differentiation enhancing factor-like 1 LOC684122 684122 XM_001069024 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1383150_at BE114751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114751 /DB_XREF=gi:8506856 /DB_XREF=UI-R-BJ1-awo-h-03-0-UI.s1 /CLONE=UI-R-BJ1-awo-h-03-0-UI /FEA=EST /CNT=9 /TID=Rn.34342.1 /TIER=ConsEnd /STK=0 /UG=Rn.34342 /UG_TITLE=ESTs BE114751 1383151_at AI011474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011474 /DB_XREF=gi:4133428 /DB_XREF=EST205925 /CLONE=ROVAV41 /FEA=EST /CNT=8 /TID=Rn.9260.1 /TIER=ConsEnd /STK=0 /UG=Rn.9260 /UG_TITLE=ESTs, Moderately similar to T00637 hypothetical protein H_GS541B18.1 (H.sapiens) AI011474 A kinase (PRKA) anchor protein (yotiao) 9 Akap9 246150 NM_001037093 0000242 // pericentriolar material // not recorded /// 0000242 // pericentriolar material // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005813 // centrosome // not recorded /// 0005829 // cytosol // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1383152_at BF544427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF544427 /DB_XREF=gi:11635534 /DB_XREF=UI-R-BT0-pv-e-03-0-UI.r1 /CLONE=UI-R-BT0-pv-e-03-0-UI /FEA=EST /CNT=8 /TID=Rn.27342.1 /TIER=ConsEnd /STK=0 /UG=Rn.27342 /UG_TITLE=ESTs, Moderately similar to Y218_HUMAN PUTATIVE DEOXYRIBONUCLEASE KIAA0218 (H.sapiens) BF544427 chitinase domain containing 1 Chid1 293628 NM_001047854 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006032 // chitin catabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004568 // chitinase activity // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation 1383153_at AI555284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555284 /DB_XREF=gi:4487647 /DB_XREF=UI-R-C2p-qq-b-05-0-UI.s1 /CLONE=UI-R-C2p-qq-b-05-0-UI /FEA=EST /CNT=8 /TID=Rn.23647.1 /TIER=ConsEnd /STK=0 /UG=Rn.23647 /UG_TITLE=ESTs AI555284 1383154_at H34497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H34497 /DB_XREF=gi:979914 /DB_XREF=EST111488 /CLONE=RPNCB22 /FEA=EST /CNT=8 /TID=Rn.23353.1 /TIER=ConsEnd /STK=0 /UG=Rn.23353 /UG_TITLE=ESTs H34497 similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin c2 LOC685179 685179 XM_001055673 /// XM_001055738 /// XM_001055795 /// XM_002726856 /// XM_002729767 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006338 // chromatin remodeling // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0000785 // chromatin // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0016514 // SWI/SNF complex // not recorded /// 0017053 // transcriptional repressor complex // not recorded /// 0071564 // npBAF complex // not recorded /// 0071565 // nBAF complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383155_at AA945854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945854 /DB_XREF=gi:3105770 /DB_XREF=EST201353 /CLONE=RLUAW07 /FEA=EST /CNT=8 /TID=Rn.8070.1 /TIER=ConsEnd /STK=0 /UG=Rn.8070 /UG_TITLE=ESTs AA945854 family with sequence similarity 117, member B Fam117b 363236 NM_001108797 1383156_at H31899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31899 /DB_XREF=gi:977316 /DB_XREF=EST106440 /FEA=EST /CNT=8 /TID=Rn.24898.1 /TIER=ConsEnd /STK=0 /UG=Rn.24898 /UG_TITLE=ESTs H31899 kinesin family member 2A Kif2a 84391 XM_001065116 /// XM_001065173 /// XM_002729004 /// XM_345150 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007052 // mitotic spindle organization // not recorded /// 0007052 // mitotic spindle organization // inferred from sequence or structural similarity /// 0007067 // mitosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000922 // spindle pole // not recorded /// 0000922 // spindle pole // inferred from sequence or structural similarity /// 0000922 // spindle pole // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded /// 0005876 // spindle microtubule // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1383157_at AW520344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520344 /DB_XREF=gi:7162722 /DB_XREF=UI-R-BJ0p-aex-e-04-0-UI.s1 /CLONE=UI-R-BJ0p-aex-e-04-0-UI /FEA=EST /CNT=8 /TID=Rn.3298.1 /TIER=ConsEnd /STK=0 /UG=Rn.3298 /UG_TITLE=ESTs, Weakly similar to S28312 hypothetical protein F02A9.4 - Caenorhabditis elegans (C.elegans) AW520344 mitochondrial ribosomal protein L44 Mrpl44 301552 NM_001031650 0006396 // RNA processing // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0004525 // ribonuclease III activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383158_at AI575747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575747 /DB_XREF=gi:4560123 /DB_XREF=UI-R-G0-ue-b-12-0-UI.s1 /CLONE=UI-R-G0-ue-b-12-0-UI /FEA=EST /CNT=8 /TID=Rn.3734.2 /TIER=ConsEnd /STK=0 /UG=Rn.3734 /UG_TITLE=ESTs, Moderately similar to A57088 nucleoporin-like protein Rab (H.sapiens) AI575747 ArfGAP with FG repeats 1 Agfg1 363266 NM_001135596 0001675 // acrosome assembly // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007289 // spermatid nucleus differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation /// 0045109 // intermediate filament organization // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383159_at AW434445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434445 /DB_XREF=gi:6965752 /DB_XREF=UI-R-BJ0p-afr-c-01-0-UI.s1 /CLONE=UI-R-BJ0p-afr-c-01-0-UI /FEA=EST /CNT=8 /TID=Rn.801.1 /TIER=ConsEnd /STK=0 /UG=Rn.801 /UG_TITLE=ESTs AW434445 Target of myb1-like 2 (chicken) Tom1l2 360537 NM_001108277 0006886 // intracellular protein transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 1383160_at AA892238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892238 /DB_XREF=gi:3019117 /DB_XREF=EST196041 /CLONE=RKIAO07 /FEA=EST /CNT=8 /TID=Rn.6136.1 /TIER=ConsEnd /STK=0 /UG=Rn.6136 /UG_TITLE=ESTs AA892238 cysteine and histidine-rich domain (CHORD)-containing 1 Chordc1 315447 NM_001108128 0005509 // calcium ion binding // not recorded /// 0008270 // zinc ion binding // not recorded /// 0042802 // identical protein binding // not recorded 1383161_a_at AI008646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008646 /DB_XREF=gi:4132919 /DB_XREF=EST203097 /CLONE=REMBB18 /FEA=EST /CNT=8 /TID=Rn.3800.3 /TIER=ConsEnd /STK=0 /UG=Rn.3800 /UG_TITLE=ESTs AI008646 1383162_at AI008646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008646 /DB_XREF=gi:4132919 /DB_XREF=EST203097 /CLONE=REMBB18 /FEA=EST /CNT=8 /TID=Rn.3800.3 /TIER=ConsEnd /STK=0 /UG=Rn.3800 /UG_TITLE=ESTs AI008646 1383163_at AA817898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817898 /DB_XREF=gi:4198422 /DB_XREF=UI-R-A0-af-d-06-0-UI.s2 /CLONE=UI-R-A0-af-d-06-0-UI /FEA=EST /CNT=8 /TID=Rn.17804.1 /TIER=ConsEnd /STK=0 /UG=Rn.17804 /UG_TITLE=ESTs AA817898 immunoglobulin joining chain Igj 360922 1383164_at AW524366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524366 /DB_XREF=gi:7166751 /DB_XREF=UI-R-BO0-ahj-e-02-0-UI.s1 /CLONE=UI-R-BO0-ahj-e-02-0-UI /FEA=EST /CNT=8 /TID=Rn.7792.1 /TIER=ConsEnd /STK=0 /UG=Rn.7792 /UG_TITLE=ESTs AW524366 1383165_at BM390462 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390462 /DB_XREF=gi:18190515 /DB_XREF=UI-R-CN1-cjq-f-24-0-UI.s1 /CLONE=UI-R-CN1-cjq-f-24-0-UI /FEA=EST /CNT=8 /TID=Rn.22751.1 /TIER=ConsEnd /STK=0 /UG=Rn.22751 /UG_TITLE=ESTs BM390462 similar to KIAA1324 protein RGD1310209 362019 XR_085774 /// XR_086182 0005515 // protein binding // inferred from electronic annotation 1383166_at BE100595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100595 /DB_XREF=gi:8492490 /DB_XREF=UI-R-BJ1-auk-c-03-0-UI.s1 /CLONE=UI-R-BJ1-auk-c-03-0-UI /FEA=EST /CNT=8 /TID=Rn.25103.1 /TIER=ConsEnd /STK=0 /UG=Rn.25103 /UG_TITLE=ESTs BE100595 nuclear receptor coactivator 1 Ncoa1 313929 NM_001108012 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0021549 // cerebellum development // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from mutant phenotype /// 0032526 // response to retinoic acid // inferred from mutant phenotype /// 0032570 // response to progesterone stimulus // inferred from mutant phenotype /// 0032870 // cellular response to hormone stimulus // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060206 // estrous cycle phase // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0035257 // nuclear hormone receptor binding // inferred from electronic annotation 1383167_at BM392101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392101 /DB_XREF=gi:18192154 /DB_XREF=UI-R-DO1-ckp-m-01-0-UI.s1 /CLONE=UI-R-DO1-ckp-m-01-0-UI /FEA=EST /CNT=8 /TID=Rn.6371.1 /TIER=ConsEnd /STK=0 /UG=Rn.6371 /UG_TITLE=ESTs BM392101 1383168_at BE102209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102209 /DB_XREF=gi:8494308 /DB_XREF=UI-R-BT1-aqf-g-06-0-UI.s1 /CLONE=UI-R-BT1-aqf-g-06-0-UI /FEA=EST /CNT=8 /TID=Rn.17085.1 /TIER=ConsEnd /STK=0 /UG=Rn.17085 /UG_TITLE=ESTs BE102209 hypothetical protein LOC688298 LOC688298 688298 NM_001143896 1383169_at BF563716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563716 /DB_XREF=gi:11673446 /DB_XREF=UI-R-BT1-akq-c-10-0-UI.r1 /CLONE=UI-R-BT1-akq-c-10-0-UI /FEA=EST /CNT=21 /TID=Rn.53670.1 /TIER=ConsEnd /STK=0 /UG=Rn.53670 /UG_TITLE=ESTs BF563716 1383170_at AW143788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143788 /DB_XREF=gi:6163687 /DB_XREF=EST294084 /CLONE=RGICA26 /FEA=EST /CNT=17 /TID=Rn.7599.1 /TIER=ConsEnd /STK=0 /UG=Rn.7599 /UG_TITLE=ESTs AW143788 1383171_at BG373674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373674 /DB_XREF=gi:13270211 /DB_XREF=UI-R-CV1-bsg-f-01-0-UI.s1 /CLONE=UI-R-CV1-bsg-f-01-0-UI /FEA=EST /CNT=14 /TID=Rn.11951.1 /TIER=ConsEnd /STK=0 /UG=Rn.11951 /UG_TITLE=ESTs, Moderately similar to S27870 house-keeping protein - mouse (M.musculus) BG373674 transcription factor B2, mitochondrial Tfb2m 289307 NM_001008293 0000154 // rRNA modification // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from electronic annotation /// 0006390 // transcription from mitochondrial promoter // inferred from electronic annotation /// 0006390 // transcription from mitochondrial promoter // not recorded /// 0031167 // rRNA methylation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded 0000179 // rRNA (adenine-N6,N6-)-dimethyltransferase activity // inferred from electronic annotation /// 0003712 // transcription cofactor activity // inferred from electronic annotation /// 0003712 // transcription cofactor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008649 // rRNA methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1383172_at BF543886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543886 /DB_XREF=gi:11634993 /DB_XREF=UI-R-Y0-abv-h-01-0-UI.r1 /CLONE=UI-R-Y0-abv-h-01-0-UI /FEA=EST /CNT=13 /TID=Rn.38608.1 /TIER=ConsEnd /STK=0 /UG=Rn.38608 /UG_TITLE=ESTs, Weakly similar to CYPH RAT PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A (R.norvegicus) BF543886 RAN binding protein 2 Ranbp2 294429 NM_001191604 /// XM_001053839 /// XM_002725863 /// XM_002728957 /// XM_215401 0006457 // protein folding // inferred from electronic annotation /// 0046907 // intracellular transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005643 // nuclear pore // not recorded /// 0005829 // cytosol // not recorded 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1383173_at BI281630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281630 /DB_XREF=gi:14931553 /DB_XREF=UI-R-CT0s-cau-f-05-0-UI.s1 /CLONE=UI-R-CT0s-cau-f-05-0-UI /FEA=EST /CNT=11 /TID=Rn.16027.1 /TIER=ConsEnd /STK=0 /UG=Rn.16027 /UG_TITLE=ESTs BI281630 1383174_at AI576562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576562 /DB_XREF=gi:4560938 /DB_XREF=UI-R-G0-uq-g-04-0-UI.s1 /CLONE=UI-R-G0-uq-g-04-0-UI /FEA=EST /CNT=10 /TID=Rn.3864.1 /TIER=ConsEnd /STK=0 /UG=Rn.3864 /UG_TITLE=ESTs AI576562 1383175_a_at BF561368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561368 /DB_XREF=gi:11671098 /DB_XREF=UI-R-C0-hq-d-08-0-UI.r1 /CLONE=UI-R-C0-hq-d-08-0-UI /FEA=EST /CNT=10 /TID=Rn.40386.2 /TIER=ConsEnd /STK=0 /UG=Rn.40386 /UG_TITLE=ESTs BF561368 similar to C11orf17 protein RGD1306959 361624 NM_001108497 0005515 // protein binding // not recorded 1383176_at BF561368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561368 /DB_XREF=gi:11671098 /DB_XREF=UI-R-C0-hq-d-08-0-UI.r1 /CLONE=UI-R-C0-hq-d-08-0-UI /FEA=EST /CNT=10 /TID=Rn.40386.2 /TIER=ConsEnd /STK=0 /UG=Rn.40386 /UG_TITLE=ESTs BF561368 similar to C11orf17 protein RGD1306959 361624 NM_001108497 0005515 // protein binding // not recorded 1383177_at AI232085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232085 /DB_XREF=gi:3815965 /DB_XREF=EST228773 /CLONE=RKIBW67 /FEA=EST /CNT=9 /TID=Rn.1530.1 /TIER=ConsEnd /STK=0 /UG=Rn.1530 /UG_TITLE=ESTs, Highly similar to AF151805 1 CGI-47 protein (H.sapiens) AI232085 1383178_at AA848470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848470 /DB_XREF=gi:2936010 /DB_XREF=EST191230 /CLONE=RKIAC53 /FEA=EST /CNT=9 /TID=Rn.22046.1 /TIER=ConsEnd /STK=0 /UG=Rn.22046 /UG_TITLE=ESTs AA848470 F-box protein 28 Fbxo28 305105 NM_001107203 1383179_at BI291413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291413 /DB_XREF=gi:14950927 /DB_XREF=UI-R-CV2-cgp-h-05-0-UI.s1 /CLONE=UI-R-CV2-cgp-h-05-0-UI /FEA=EST /CNT=9 /TID=Rn.15161.1 /TIER=ConsEnd /STK=0 /UG=Rn.15161 /UG_TITLE=ESTs BI291413 1383180_at BF288097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288097 /DB_XREF=gi:11219167 /DB_XREF=EST452688 /CLONE=RGIGP48 /FEA=EST /CNT=9 /TID=Rn.41005.1 /TIER=ConsEnd /STK=0 /UG=Rn.41005 /UG_TITLE=ESTs, Highly similar to IPP2 RAT PROTEIN PHOSPHATASE INHIBITOR 2 (R.norvegicus) BF288097 protein phosphatase 1, regulatory (inhibitor) subunit 2 Ppp1r2 192361 NM_138823 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0009966 // regulation of signal transduction // inferred from electronic annotation /// 0043666 // regulation of phosphoprotein phosphatase activity // inferred from electronic annotation 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from electronic annotation 1383181_at AI704947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI704947 /DB_XREF=gi:4992847 /DB_XREF=UI-R-AB1-ys-f-01-0-UI.s1 /CLONE=UI-R-AB1-ys-f-01-0-UI /FEA=EST /CNT=9 /TID=Rn.16186.1 /TIER=ConsEnd /STK=0 /UG=Rn.16186 /UG_TITLE=ESTs AI704947 DnaJ (Hsp40) homolog, subfamily C, member 9 Dnajc9 364240 NM_001108865 0031072 // heat shock protein binding // inferred from electronic annotation 1383182_at AW144184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144184 /DB_XREF=gi:6164083 /DB_XREF=EST294480 /CLONE=RGICK58 /FEA=EST /CNT=8 /TID=Rn.6869.1 /TIER=ConsEnd /STK=0 /UG=Rn.6869 /UG_TITLE=ESTs, Highly similar to JC5930 serinearginine-rich protein-specific kinase (M.musculus) AW144184 SFRS protein kinase 1 Srpk1 361811 NM_001025726 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007059 // chromosome segregation // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0050684 // regulation of mRNA processing // inferred from electronic annotation /// 0050684 // regulation of mRNA processing // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1383183_at AI072458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072458 /DB_XREF=gi:3398652 /DB_XREF=UI-R-C2-nk-g-04-0-UI.s1 /CLONE=UI-R-C2-nk-g-04-0-UI /FEA=EST /CNT=8 /TID=Rn.20162.1 /TIER=ConsEnd /STK=0 /UG=Rn.20162 /UG_TITLE=ESTs AI072458 1383184_at AW916773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916773 /DB_XREF=gi:8082613 /DB_XREF=EST348181 /CLONE=RGIDW13 /FEA=EST /CNT=8 /TID=Rn.32245.1 /TIER=ConsEnd /STK=0 /UG=Rn.32245 /UG_TITLE=ESTs AW916773 zinc and ring finger 2 Znrf2 362367 NM_001108628 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383185_at BE105131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105131 /DB_XREF=gi:8497232 /DB_XREF=UI-R-BX0-asg-g-10-0-UI.s1 /CLONE=UI-R-BX0-asg-g-10-0-UI /FEA=EST /CNT=8 /TID=Rn.15956.1 /TIER=ConsEnd /STK=0 /UG=Rn.15956 /UG_TITLE=ESTs BE105131 1383186_at BG377375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377375 /DB_XREF=gi:13301847 /DB_XREF=UI-R-CU0-bvc-g-03-0-UI.s1 /CLONE=UI-R-CU0-bvc-g-03-0-UI /FEA=EST /CNT=8 /TID=Rn.13233.1 /TIER=ConsEnd /STK=0 /UG=Rn.13233 /UG_TITLE=ESTs BG377375 similar to RIKEN cDNA 1600013K19 RGD1307749 299338 NM_001106759 1383187_a_at AA944136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944136 /DB_XREF=gi:3104052 /DB_XREF=EST199635 /CLONE=REMAB73 /FEA=EST /CNT=8 /TID=Rn.24116.1 /TIER=ConsEnd /STK=0 /UG=Rn.24116 /UG_TITLE=ESTs AA944136 1383188_at BM390716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390716 /DB_XREF=gi:18190769 /DB_XREF=UI-R-CN1-cjr-d-23-0-UI.s1 /CLONE=UI-R-CN1-cjr-d-23-0-UI /FEA=EST /CNT=8 /TID=Rn.22635.1 /TIER=ConsEnd /STK=0 /UG=Rn.22635 /UG_TITLE=ESTs BM390716 1383189_at AA818143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818143 /DB_XREF=gi:4198657 /DB_XREF=UI-R-A0-am-a-12-0-UI.s1 /CLONE=UI-R-A0-am-a-12-0-UI /FEA=EST /CNT=8 /TID=Rn.17485.1 /TIER=ConsEnd /STK=0 /UG=Rn.17485 /UG_TITLE=ESTs AA818143 1383190_at BE113297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113297 /DB_XREF=gi:8505442 /DB_XREF=UI-R-BJ1-awe-b-12-0-UI.s1 /CLONE=UI-R-BJ1-awe-b-12-0-UI /FEA=EST /CNT=8 /TID=Rn.49283.1 /TIER=ConsEnd /STK=0 /UG=Rn.49283 /UG_TITLE=ESTs BE113297 ELMO/CED-12 domain containing 2 Elmod2 688581 NM_001109506 0006909 // phagocytosis // inferred from electronic annotation 0005856 // cytoskeleton // inferred from electronic annotation 1383191_at BE097583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097583 /DB_XREF=gi:8488514 /DB_XREF=UI-R-BO1-apz-c-10-0-UI.s1 /CLONE=UI-R-BO1-apz-c-10-0-UI /FEA=EST /CNT=8 /TID=Rn.18622.1 /TIER=ConsEnd /STK=0 /UG=Rn.18622 /UG_TITLE=ESTs BE097583 protein phosphatase 1, regulatory (inhibitor) subunit 1A Ppp1r1a 58977 NM_022676 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383192_at BI289990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289990 /DB_XREF=gi:14948132 /DB_XREF=UI-R-DK0-cfq-e-10-0-UI.s1 /CLONE=UI-R-DK0-cfq-e-10-0-UI /FEA=EST /CNT=8 /TID=Rn.24889.1 /TIER=ConsEnd /STK=0 /UG=Rn.24889 /UG_TITLE=ESTs BI289990 spastin Spast 362700 NM_001108702 0001578 // microtubule bundle formation // inferred from sequence or structural similarity /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from electronic annotation /// 0007109 // cytokinesis, completion of separation // inferred from sequence or structural similarity /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0034214 // protein hexamerization // inferred from sequence or structural similarity /// 0051013 // microtubule severing // inferred from sequence or structural similarity /// 0051260 // protein homooligomerization // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from sequence or structural similarity /// 0005768 // endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from sequence or structural similarity /// 0008568 // microtubule-severing ATPase activity // inferred from sequence or structural similarity /// 0008568 // microtubule-severing ATPase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0043014 // alpha-tubulin binding // inferred from sequence or structural similarity /// 0048487 // beta-tubulin binding // inferred from sequence or structural similarity 1383193_at BE112341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112341 /DB_XREF=gi:8504446 /DB_XREF=UI-R-BJ1-avh-e-03-0-UI.s1 /CLONE=UI-R-BJ1-avh-e-03-0-UI /FEA=EST /CNT=8 /TID=Rn.37273.2 /TIER=ConsEnd /STK=0 /UG=Rn.37273 /UG_TITLE=ESTs BE112341 1383194_a_at AI030349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030349 /DB_XREF=gi:3248175 /DB_XREF=UI-R-C0-iu-g-02-0-UI.s1 /CLONE=UI-R-C0-iu-g-02-0-UI /FEA=EST /CNT=8 /TID=Rn.6374.1 /TIER=ConsEnd /STK=0 /UG=Rn.6374 /UG_TITLE=ESTs AI030349 1383195_at AW521311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521311 /DB_XREF=gi:7163689 /DB_XREF=UI-R-BO0-agl-a-11-0-UI.s1 /CLONE=UI-R-BO0-agl-a-11-0-UI /FEA=EST /CNT=8 /TID=Rn.12545.1 /TIER=ConsEnd /STK=0 /UG=Rn.12545 /UG_TITLE=ESTs AW521311 1383196_at BI289677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289677 /DB_XREF=gi:14947505 /DB_XREF=UI-R-DK0-cfi-g-11-0-UI.s1 /CLONE=UI-R-DK0-cfi-g-11-0-UI /FEA=EST /CNT=8 /TID=Rn.20534.1 /TIER=ConsEnd /STK=0 /UG=Rn.20534 /UG_TITLE=ESTs BI289677 zinc finger protein 579 Znf579 308339 NM_001126276 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1383197_at AA849471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849471 /DB_XREF=gi:2937011 /DB_XREF=EST192238 /CLONE=RMUAF21 /FEA=EST /CNT=8 /TID=Rn.6473.1 /TIER=ConsEnd /STK=0 /UG=Rn.6473 /UG_TITLE=ESTs AA849471 junctional adhesion molecule 2 Jam2 619374 NM_001034004 0005886 // plasma membrane // not recorded 1383198_at AI598511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598511 /DB_XREF=gi:4607545 /DB_XREF=EST250200 /CLONE=REMDR81 /FEA=EST /CNT=8 /TID=Rn.25168.1 /TIER=ConsEnd /STK=0 /UG=Rn.25168 /UG_TITLE=ESTs AI598511 RNA binding motif protein 33 Rbm33 362297 NM_001191859 /// XM_001059091 /// XM_342610 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1383199_at AW140820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW140820 /DB_XREF=gi:6160658 /DB_XREF=EST290902 /CLONE=RGIAU56 /FEA=EST /CNT=8 /TID=Rn.24916.1 /TIER=ConsEnd /STK=0 /UG=Rn.24916 /UG_TITLE=ESTs AW140820 1383200_at BF418327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418327 /DB_XREF=gi:11406316 /DB_XREF=UI-R-CA0-bmd-g-02-0-UI.s1 /CLONE=UI-R-CA0-bmd-g-02-0-UI /FEA=EST /CNT=8 /TID=Rn.7655.1 /TIER=ConsEnd /STK=0 /UG=Rn.7655 /UG_TITLE=ESTs BF418327 coiled-coil domain containing 81 Ccdc81 308810 NM_001014021 1383201_at BI289300 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289300 /DB_XREF=gi:14946724 /DB_XREF=UI-R-DK0-cfk-h-10-0-UI.s1 /CLONE=UI-R-DK0-cfk-h-10-0-UI /FEA=EST /CNT=8 /TID=Rn.17066.2 /TIER=ConsEnd /STK=0 /UG=Rn.17066 /UG_TITLE=ESTs BI289300 1383202_at AA818406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818406 /DB_XREF=gi:4228203 /DB_XREF=UI-R-A0-au-e-04-0-UI.s1 /CLONE=UI-R-A0-au-e-04-0-UI /FEA=EST /CNT=8 /TID=Rn.16846.1 /TIER=ConsEnd /STK=0 /UG=Rn.16846 /UG_TITLE=ESTs, Highly similar to LSM6_HUMAN U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM6 (H.sapiens) AA818406 LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) Lsm6 498934 NM_001126085 0005515 // protein binding // not recorded 1383203_at AI145631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145631 /DB_XREF=gi:3667430 /DB_XREF=UI-R-BT0-ps-e-07-0-UI.s1 /CLONE=UI-R-BT0-ps-e-07-0-UI /FEA=EST /CNT=8 /TID=Rn.6623.1 /TIER=ConsEnd /STK=0 /UG=Rn.6623 /UG_TITLE=ESTs, Weakly similar to S17447 probable ligand-binding protein RY2G5 - rat (R.norvegicus) AI145631 similar to Palate lung and nasal carcinoma-like protein precursor (Tongue plunc-like protein) RGD1559748 311559 NM_001107792 0008289 // lipid binding // inferred from electronic annotation 1383204_at BE099804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099804 /DB_XREF=gi:8491684 /DB_XREF=UI-R-BJ1-atq-d-09-0-UI.s1 /CLONE=UI-R-BJ1-atq-d-09-0-UI /FEA=EST /CNT=8 /TID=Rn.27736.1 /TIER=ConsEnd /STK=0 /UG=Rn.27736 /UG_TITLE=ESTs BE099804 1383205_at BI288833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288833 /DB_XREF=gi:14945797 /DB_XREF=UI-R-DK0-cdf-d-09-0-UI.s1 /CLONE=UI-R-DK0-cdf-d-09-0-UI /FEA=EST /CNT=8 /TID=Rn.2966.1 /TIER=ConsEnd /STK=0 /UG=Rn.2966 /UG_TITLE=ESTs BI288833 dapper, antagonist of beta-catenin, homolog 2 (Xenopus laevis) Dact2 308212 NM_001107464 0005739 // mitochondrion // not recorded 1383206_at AA955098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955098 /DB_XREF=gi:4238728 /DB_XREF=UI-R-A1-ez-g-03-0-UI.s2 /CLONE=UI-R-A1-ez-g-03-0-UI /FEA=EST /CNT=8 /TID=Rn.8818.1 /TIER=ConsEnd /STK=0 /UG=Rn.8818 /UG_TITLE=ESTs AA955098 component of oligomeric golgi complex 3 Cog3 361073 NM_001012157 0006486 // protein glycosylation // inferred from electronic annotation /// 0006486 // protein glycosylation // not recorded /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // not recorded /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // not recorded /// 0006891 // intra-Golgi vesicle-mediated transport // inferred from electronic annotation /// 0006891 // intra-Golgi vesicle-mediated transport // not recorded /// 0033365 // protein localization in organelle // inferred from electronic annotation /// 0033365 // protein localization in organelle // not recorded /// 0050821 // protein stabilization // inferred from electronic annotation /// 0050821 // protein stabilization // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005801 // cis-Golgi network // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0017119 // Golgi transport complex // inferred from electronic annotation /// 0017119 // Golgi transport complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0008565 // protein transporter activity // not recorded 1383207_at BE103628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103628 /DB_XREF=gi:8495728 /DB_XREF=UI-R-BX0-arg-e-06-0-UI.s1 /CLONE=UI-R-BX0-arg-e-06-0-UI /FEA=EST /CNT=7 /TID=Rn.12927.1 /TIER=ConsEnd /STK=0 /UG=Rn.12927 /UG_TITLE=ESTs BE103628 RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae) Rrn3 304714 NM_001135846 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006361 // transcription initiation from RNA polymerase I promoter // inferred from electronic annotation /// 0006361 // transcription initiation from RNA polymerase I promoter // not recorded /// 0007000 // nucleolus organization // inferred from electronic annotation /// 0007000 // nucleolus organization // not recorded /// 0007028 // cytoplasm organization // inferred from electronic annotation /// 0007028 // cytoplasm organization // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0042254 // ribosome biogenesis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0048872 // homeostasis of number of cells // inferred from electronic annotation /// 0048872 // homeostasis of number of cells // not recorded 0005654 // nucleoplasm // not recorded 1383208_at AW142350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142350 /DB_XREF=gi:6162249 /DB_XREF=EST292600 /CLONE=RGIAH46 /FEA=EST /CNT=7 /TID=Rn.16446.1 /TIER=ConsEnd /STK=0 /UG=Rn.16446 /UG_TITLE=ESTs, Weakly similar to CBFA MOUSE CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT A (R.norvegicus) AW142350 polymerase (DNA directed), epsilon 3 (p17 subunit) Pole3 298098 NM_001007652 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1383209_at AW916721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916721 /DB_XREF=gi:8082453 /DB_XREF=EST348025 /CLONE=RGIDT93 /FEA=EST /CNT=7 /TID=Rn.4177.1 /TIER=ConsEnd /STK=0 /UG=Rn.4177 /UG_TITLE=ESTs AW916721 family with sequence similarity 116, member A Fam116a 306229 NM_001134467 1383210_at BF554576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554576 /DB_XREF=gi:11664306 /DB_XREF=UI-R-C0-iu-a-07-0-UI.r1 /CLONE=UI-R-C0-iu-a-07-0-UI /FEA=EST /CNT=7 /TID=Rn.53920.2 /TIER=ConsEnd /STK=0 /UG=Rn.53920 /UG_TITLE=ESTs BF554576 1383211_at BE109736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109736 /DB_XREF=gi:8501841 /DB_XREF=UI-R-BJ1-aup-e-08-0-UI.s1 /CLONE=UI-R-BJ1-aup-e-08-0-UI /FEA=EST /CNT=7 /TID=Rn.9307.1 /TIER=ConsEnd /STK=0 /UG=Rn.9307 /UG_TITLE=ESTs BE109736 1383212_at AA925526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925526 /DB_XREF=gi:4236717 /DB_XREF=UI-R-A1-em-f-01-0-UI.s1 /CLONE=UI-R-A1-em-f-01-0-UI /FEA=EST /CNT=7 /TID=Rn.13675.1 /TIER=ConsEnd /STK=0 /UG=Rn.13675 /UG_TITLE=ESTs AA925526 1383213_at BF393611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393611 /DB_XREF=gi:11378473 /DB_XREF=UI-R-CA0-bgd-h-07-0-UI.s1 /CLONE=UI-R-CA0-bgd-h-07-0-UI /FEA=EST /CNT=7 /TID=Rn.22651.1 /TIER=ConsEnd /STK=0 /UG=Rn.22651 /UG_TITLE=ESTs, Highly similar to EPIDERMAL GROWTH FACTOR RECEPTOR KINASE SUBSTRATE EPS8 (M.musculus) BF393611 epidermal growth factor receptor pathway substrate 8 Eps8 312812 XM_001072957 /// XM_232499 0008344 // adult locomotory behavior // not recorded /// 0031532 // actin cytoskeleton reorganization // not recorded /// 0048149 // behavioral response to ethanol // not recorded 0014069 // postsynaptic density // not recorded /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // not recorded /// 0019717 // synaptosome // not recorded 0005515 // protein binding // not recorded 1383214_at AI555989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555989 /DB_XREF=gi:4488352 /DB_XREF=UI-R-C2p-rc-h-02-0-UI.s1 /CLONE=UI-R-C2p-rc-h-02-0-UI /FEA=EST /CNT=7 /TID=Rn.22961.1 /TIER=ConsEnd /STK=0 /UG=Rn.22961 /UG_TITLE=ESTs AI555989 1383215_at BF557467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557467 /DB_XREF=gi:11667197 /DB_XREF=UI-R-E1-gd-e-03-0-UI.r1 /CLONE=UI-R-E1-gd-e-03-0-UI /FEA=EST /CNT=7 /TID=Rn.40312.1 /TIER=ConsEnd /STK=0 /UG=Rn.40312 /UG_TITLE=ESTs BF557467 similar to TPR repeat-containing protein KIAA1043 LOC304558 304558 XM_001080633 /// XM_222260 0005488 // binding // inferred from electronic annotation 1383216_at BM390667 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390667 /DB_XREF=gi:18190720 /DB_XREF=UI-R-CN1-cjr-k-06-0-UI.s1 /CLONE=UI-R-CN1-cjr-k-06-0-UI /FEA=EST /CNT=7 /TID=Rn.19593.1 /TIER=ConsEnd /STK=0 /UG=Rn.19593 /UG_TITLE=ESTs BM390667 ATM interactor Atmin 315037 NM_001191786 /// XM_001078346 /// XM_235378 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1383217_at BE112670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112670 /DB_XREF=gi:8504775 /DB_XREF=UI-R-BJ1-avj-d-08-0-UI.s1 /CLONE=UI-R-BJ1-avj-d-08-0-UI /FEA=EST /CNT=7 /TID=Rn.37804.1 /TIER=ConsEnd /STK=0 /UG=Rn.37804 /UG_TITLE=ESTs BE112670 similar to zinc finger, RAN-binding domain containing 3 RGD1564952 304761 XM_002724888 /// XM_002728000 0003677 // DNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1383218_at BF286009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF286009 /DB_XREF=gi:11217079 /DB_XREF=EST450600 /CLONE=RGIFL59 /FEA=EST /CNT=7 /TID=Rn.38978.1 /TIER=ConsEnd /STK=0 /UG=Rn.38978 /UG_TITLE=ESTs BF286009 1383219_at BE109305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109305 /DB_XREF=gi:8501410 /DB_XREF=UI-R-BJ1-auq-d-05-0-UI.s1 /CLONE=UI-R-BJ1-auq-d-05-0-UI /FEA=EST /CNT=7 /TID=Rn.23335.1 /TIER=ConsEnd /STK=0 /UG=Rn.23335 /UG_TITLE=ESTs, Weakly similar to T42734 cytoplasmic linker protein CLIP-115 - rat (R.norvegicus) BE109305 CAP-GLY domain containing linker protein family, member 4 Clip4 298801 NM_001013942 1383220_at BE114231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114231 /DB_XREF=gi:8506336 /DB_XREF=UI-R-CA0-axo-f-08-0-UI.s1 /CLONE=UI-R-CA0-axo-f-08-0-UI /FEA=EST /CNT=7 /TID=Rn.22955.1 /TIER=ConsEnd /STK=0 /UG=Rn.22955 /UG_TITLE=ESTs BE114231 1383221_at BG378463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378463 /DB_XREF=gi:13302935 /DB_XREF=UI-R-CU0-bvj-d-07-0-UI.s1 /CLONE=UI-R-CU0-bvj-d-07-0-UI /FEA=EST /CNT=7 /TID=Rn.38808.1 /TIER=ConsEnd /STK=0 /UG=Rn.38808 /UG_TITLE=ESTs BG378463 RGD1563547 RGD1563547 360478 NM_001108266 1383222_at AA892299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892299 /DB_XREF=gi:3019178 /DB_XREF=EST196102 /CLONE=RKIAO75 /FEA=EST /CNT=7 /TID=Rn.1708.1 /TIER=ConsEnd /STK=0 /UG=Rn.1708 /UG_TITLE=ESTs AA892299 1383223_at BG672206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672206 /DB_XREF=gi:13894305 /DB_XREF=DRNCDE08 /CLONE=DRNCDE08 /FEA=EST /CNT=7 /TID=Rn.7979.1 /TIER=ConsEnd /STK=0 /UG=Rn.7979 /UG_TITLE=ESTs, Highly similar to ubiquitin-like 3 (Homo sapiens) (H.sapiens) BG672206 ubiquitin-like 3 Ubl3 363869 NM_001015030 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1383224_at BF525012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF525012 /DB_XREF=gi:11632979 /DB_XREF=UI-R-AB0-vs-g-11-0-UI.r1 /CLONE=UI-R-AB0-vs-g-11-0-UI /FEA=EST /CNT=7 /TID=Rn.21123.1 /TIER=ConsEnd /STK=0 /UG=Rn.21123 /UG_TITLE=ESTs BF525012 par-6 (partitioning defective 6) homolog beta (C. elegans) Pard6b 362279 NM_001108609 0006461 // protein complex assembly // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0005923 // tight junction // not recorded /// 0005938 // cell cortex // not recorded /// 0045177 // apical part of cell // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383225_at BF396682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396682 /DB_XREF=gi:11381662 /DB_XREF=UI-R-BS2-bea-h-08-0-UI.s1 /CLONE=UI-R-BS2-bea-h-08-0-UI /FEA=EST /CNT=7 /TID=Rn.2894.1 /TIER=ConsEnd /STK=0 /UG=Rn.2894 /UG_TITLE=ESTs BF396682 1383226_at BI293943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293943 /DB_XREF=gi:14955923 /DB_XREF=UI-R-DK0-cdw-h-11-0-UI.s1 /CLONE=UI-R-DK0-cdw-h-11-0-UI /FEA=EST /CNT=7 /TID=Rn.22770.1 /TIER=ConsEnd /STK=0 /UG=Rn.22770 /UG_TITLE=ESTs BI293943 zinc finger protein X-linked Zfx 367832 NM_001109017 0001541 // ovarian follicle development // not recorded /// 0007281 // germ cell development // not recorded /// 0007283 // spermatogenesis // not recorded /// 0007610 // behavior // not recorded /// 0009566 // fertilization // not recorded /// 0009790 // embryo development // not recorded /// 0009791 // post-embryonic development // not recorded /// 0016265 // death // not recorded /// 0035264 // multicellular organism growth // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048599 // oocyte development // not recorded /// 0048872 // homeostasis of number of cells // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383227_at BI288882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288882 /DB_XREF=gi:14945894 /DB_XREF=UI-R-CS0s-cbl-b-05-0-UI.s2 /CLONE=UI-R-CS0s-cbl-b-05-0-UI /FEA=EST /CNT=7 /TID=Rn.16502.1 /TIER=ConsEnd /STK=0 /UG=Rn.16502 /UG_TITLE=ESTs BI288882 similar to ADP-ribosylation factor-like 1 LOC688311 688311 XM_001081794 /// XM_002724584 0005525 // GTP binding // inferred from electronic annotation 1383228_at AA875288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875288 /DB_XREF=gi:4231167 /DB_XREF=UI-R-E0-ce-d-10-0-UI.s1 /CLONE=UI-R-E0-ce-d-10-0-UI /FEA=EST /CNT=7 /TID=Rn.2791.1 /TIER=ConsEnd /STK=0 /UG=Rn.2791 /UG_TITLE=ESTs AA875288 1383229_at BE103071 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103071 /DB_XREF=gi:8495170 /DB_XREF=UI-R-BT1-aqw-f-02-0-UI.s1 /CLONE=UI-R-BT1-aqw-f-02-0-UI /FEA=EST /CNT=7 /TID=Rn.25281.1 /TIER=ConsEnd /STK=0 /UG=Rn.25281 /UG_TITLE=ESTs, Weakly similar to ABC1_MOUSE ATP-binding cassette, sub-family A, member 1 (ATP-binding cassette transporter 1) (ATP-binding cassette 1) (ABC-1) (M.musculus) BE103071 ATP-binding cassette, sub-family A (ABC1), member 7 Abca7 299609 NM_207598 0006810 // transport // inferred from electronic annotation /// 0006909 // phagocytosis // inferred from electronic annotation /// 0033700 // phospholipid efflux // inferred from electronic annotation /// 0033700 // phospholipid efflux // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005548 // phospholipid transporter activity // inferred from electronic annotation /// 0005548 // phospholipid transporter activity // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1383230_at BI282204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282204 /DB_XREF=gi:14932738 /DB_XREF=UI-R-CU0s-cbx-h-02-0-UI.s1 /CLONE=UI-R-CU0s-cbx-h-02-0-UI /FEA=EST /CNT=7 /TID=Rn.15123.2 /TIER=ConsEnd /STK=0 /UG=Rn.15123 /UG_TITLE=ESTs BI282204 LOC360664 RGD1311078 360664 NM_001108307 1383231_at AA955078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955078 /DB_XREF=gi:4237907 /DB_XREF=UI-R-A1-ey-h-11-0-UI.s1 /CLONE=UI-R-A1-ey-h-11-0-UI /FEA=EST /CNT=7 /TID=Rn.8811.1 /TIER=ConsEnd /STK=0 /UG=Rn.8811 /UG_TITLE=ESTs AA955078 Smad nuclear interacting protein 1 Snip1 313588 NM_001014069 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0035196 // production of miRNAs involved in gene silencing by miRNA // not recorded /// 0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from sequence or structural similarity /// 0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383232_at AI716944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716944 /DB_XREF=gi:5034200 /DB_XREF=UI-R-Y0-acl-a-10-0-UI.s1 /CLONE=UI-R-Y0-acl-a-10-0-UI /FEA=EST /CNT=7 /TID=Rn.17886.1 /TIER=ConsEnd /STK=0 /UG=Rn.17886 /UG_TITLE=ESTs AI716944 RAB33B, member of RAS oncogene family Rab33b 365793 NM_001108944 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005794 // Golgi apparatus // not recorded 0005525 // GTP binding // inferred from electronic annotation 1383233_at BI289032 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289032 /DB_XREF=gi:14946187 /DB_XREF=UI-R-DK0-cdh-g-02-0-UI.s1 /CLONE=UI-R-DK0-cdh-g-02-0-UI /FEA=EST /CNT=7 /TID=Rn.24271.1 /TIER=ConsEnd /STK=0 /UG=Rn.24271 /UG_TITLE=ESTs BI289032 family with sequence similarity 35, member A Fam35a 364514 NM_001025028 1383234_at BF405850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405850 /DB_XREF=gi:11393790 /DB_XREF=UI-R-CA1-bje-c-16-0-UI.s1 /CLONE=UI-R-CA1-bje-c-16-0-UI /FEA=EST /CNT=7 /TID=Rn.44010.1 /TIER=ConsEnd /STK=0 /UG=Rn.44010 /UG_TITLE=ESTs BF405850 1383235_at AI030667 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030667 /DB_XREF=gi:3248493 /DB_XREF=UI-R-C0-jd-f-11-0-UI.s1 /CLONE=UI-R-C0-jd-f-11-0-UI /FEA=EST /CNT=7 /TID=Rn.18562.1 /TIER=ConsEnd /STK=0 /UG=Rn.18562 /UG_TITLE=ESTs AI030667 Hypothetical protein LOC688535 LOC688535 688535 XM_001067323 1383236_at BE118678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118678 /DB_XREF=gi:8510783 /DB_XREF=UI-R-BS1-azr-e-02-0-UI.s1 /CLONE=UI-R-BS1-azr-e-02-0-UI /FEA=EST /CNT=7 /TID=Rn.53027.1 /TIER=ConsEnd /STK=0 /UG=Rn.53027 /UG_TITLE=ESTs, Highly similar to S55330 fragile X mental retardation syndrome related protein FXR1 (H.sapiens) BE118678 fragile X mental retardation, autosomal homolog 1 /// rCG41429-like Fxr1 /// LOC100366044 100366044 /// 361927 NM_001012179 /// XM_002727475 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007517 // muscle organ development // not recorded /// 0017148 // negative regulation of translation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005844 // polysome // not recorded /// 0043034 // costamere // not recorded 0002151 // G-quadruplex RNA binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // not recorded /// 0005515 // protein binding // not recorded 1383237_at BE098240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098240 /DB_XREF=gi:8490103 /DB_XREF=UI-R-BJ1-asz-d-10-0-UI.s1 /CLONE=UI-R-BJ1-asz-d-10-0-UI /FEA=EST /CNT=7 /TID=Rn.14610.2 /TIER=ConsEnd /STK=0 /UG=Rn.14610 /UG_TITLE=ESTs, Moderately similar to UBP8_HUMAN UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 8 (H.sapiens) BE098240 1383238_at AI060136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060136 /DB_XREF=gi:3333913 /DB_XREF=UI-R-C1-ll-d-02-0-UI.s1 /CLONE=UI-R-C1-ll-d-02-0-UI /FEA=EST /CNT=7 /TID=Rn.21185.1 /TIER=ConsEnd /STK=0 /UG=Rn.21185 /UG_TITLE=ESTs, Weakly similar to TGT DROME PROBABLE QUEUINE TRNA-RIBOSYLTRANSFERASE (D.melanogaster) AI060136 queuine tRNA-ribosyltransferase 1 Qtrt1 64016 NM_022250 0006400 // tRNA modification // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0008616 // queuosine biosynthetic process // not recorded /// 0008616 // queuosine biosynthetic process // traceable author statement /// 0008616 // queuosine biosynthetic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008479 // queuine tRNA-ribosyltransferase activity // not recorded /// 0008479 // queuine tRNA-ribosyltransferase activity // traceable author statement /// 0008479 // queuine tRNA-ribosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383239_at BF406915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406915 /DB_XREF=gi:11394890 /DB_XREF=UI-R-BJ2-bps-e-10-0-UI.s1 /CLONE=UI-R-BJ2-bps-e-10-0-UI /FEA=EST /CNT=7 /TID=Rn.6284.1 /TIER=ConsEnd /STK=0 /UG=Rn.6284 /UG_TITLE=ESTs BF406915 zinc finger, CCHC domain containing 7 Zcchc7 298086 NM_001106658 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383240_at BE110753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110753 /DB_XREF=gi:8502823 /DB_XREF=UI-R-BJ1-avd-c-01-0-UI.s1 /CLONE=UI-R-BJ1-avd-c-01-0-UI /FEA=EST /CNT=7 /TID=Rn.22382.2 /TIER=ConsEnd /STK=0 /UG=Rn.22382 /UG_TITLE=ESTs BE110753 1383241_at BI292425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292425 /DB_XREF=gi:14952909 /DB_XREF=UI-R-DN0-civ-f-18-0-UI.s1 /CLONE=UI-R-DN0-civ-f-18-0-UI /FEA=EST /CNT=7 /TID=Rn.6235.1 /TIER=ConsEnd /STK=0 /UG=Rn.6235 /UG_TITLE=ESTs, Weakly similar to JC6554 probable serine proteinase (R.norvegicus) BI292425 complement component 1, r subcomponent C1r 312705 NM_001134555 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1383242_a_at BF561222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561222 /DB_XREF=gi:11670952 /DB_XREF=UI-R-C0-hg-h-03-0-UI.r1 /CLONE=UI-R-C0-hg-h-03-0-UI /FEA=EST /CNT=7 /TID=Rn.37608.1 /TIER=ConsEnd /STK=0 /UG=Rn.37608 /UG_TITLE=ESTs BF561222 1383243_at BF561222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561222 /DB_XREF=gi:11670952 /DB_XREF=UI-R-C0-hg-h-03-0-UI.r1 /CLONE=UI-R-C0-hg-h-03-0-UI /FEA=EST /CNT=7 /TID=Rn.37608.1 /TIER=ConsEnd /STK=0 /UG=Rn.37608 /UG_TITLE=ESTs BF561222 1383244_at BI281726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281726 /DB_XREF=gi:14931764 /DB_XREF=UI-R-CT0s-cav-g-04-0-UI.s1 /CLONE=UI-R-CT0s-cav-g-04-0-UI /FEA=EST /CNT=7 /TID=Rn.23651.1 /TIER=ConsEnd /STK=0 /UG=Rn.23651 /UG_TITLE=ESTs BI281726 1383245_at AI454309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454309 /DB_XREF=gi:4292824 /DB_XREF=UI-R-E0-cg-f-07-0-UI.s1 /CLONE=UI-R-E0-cg-f-07-0-UI /FEA=EST /CNT=7 /TID=Rn.24202.1 /TIER=ConsEnd /STK=0 /UG=Rn.24202 /UG_TITLE=ESTs AI454309 MAP3K12 binding inhibitory protein 1 Mbip 362740 NM_001108712 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1383246_at AI146111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146111 /DB_XREF=gi:3667910 /DB_XREF=UI-R-BT0-qh-b-02-0-UI.s1 /CLONE=UI-R-BT0-qh-b-02-0-UI /FEA=EST /CNT=7 /TID=Rn.19312.1 /TIER=ConsEnd /STK=0 /UG=Rn.19312 /UG_TITLE=ESTs AI146111 armadillo repeat containing 7 Armc7 287827 NM_001127522 0005488 // binding // inferred from electronic annotation 1383247_a_at BI291029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291029 /DB_XREF=gi:14950188 /DB_XREF=UI-R-DK0-cge-e-11-0-UI.s1 /CLONE=UI-R-DK0-cge-e-11-0-UI /FEA=EST /CNT=7 /TID=Rn.16999.1 /TIER=ConsEnd /STK=0 /UG=Rn.16999 /UG_TITLE=ESTs BI291029 spinster homolog 2 Spns2 100270678 NM_001144991 0055085 // transmembrane transport // inferred from electronic annotation 1383248_at AI454611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454611 /DB_XREF=gi:4294937 /DB_XREF=UI-R-A0-aq-e-11-0-UI.s1 /CLONE=UI-R-A0-aq-e-11-0-UI /FEA=EST /CNT=7 /TID=Rn.7038.1 /TIER=ConsEnd /STK=0 /UG=Rn.7038 /UG_TITLE=ESTs AI454611 flavin containing monooxygenase 5 Fmo5 246248 NM_144739 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031227 // intrinsic to endoplasmic reticulum membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004499 // flavin-containing monooxygenase activity // inferred from direct assay /// 0004499 // flavin-containing monooxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from electronic annotation 1383249_at AW524109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524109 /DB_XREF=gi:7166494 /DB_XREF=UI-R-BO0-ahr-f-04-0-UI.s1 /CLONE=UI-R-BO0-ahr-f-04-0-UI /FEA=EST /CNT=7 /TID=Rn.25081.1 /TIER=ConsEnd /STK=0 /UG=Rn.25081 /UG_TITLE=ESTs AW524109 1383250_at BE105819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105819 /DB_XREF=gi:8497926 /DB_XREF=UI-R-BX0-ary-e-11-0-UI.s1 /CLONE=UI-R-BX0-ary-e-11-0-UI /FEA=EST /CNT=7 /TID=Rn.16331.1 /TIER=ConsEnd /STK=0 /UG=Rn.16331 /UG_TITLE=ESTs, Moderately similar to S64732 scaffold attachment factor B (H.sapiens) BE105819 UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast) Utp14a 317579 NM_001014113 0006364 // rRNA processing // inferred from electronic annotation 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0032040 // small-subunit processome // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383251_at AW524533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524533 /DB_XREF=gi:7166918 /DB_XREF=UI-R-BO0-ahz-e-09-0-UI.s1 /CLONE=UI-R-BO0-ahz-e-09-0-UI /FEA=EST /CNT=7 /TID=Rn.22730.1 /TIER=ConsEnd /STK=0 /UG=Rn.22730 /UG_TITLE=ESTs, Weakly similar to I52331 NAD+ ADP-ribosyltransferase (R.norvegicus) AW524533 poly (ADP-ribose) polymerase 2 Parp2 290027 NM_001106030 0006284 // base-excision repair // inferred from electronic annotation /// 0006284 // base-excision repair // not recorded /// 0008152 // metabolic process // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from electronic annotation /// 0003950 // NAD+ ADP-ribosyltransferase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383252_at BE115690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115690 /DB_XREF=gi:8507795 /DB_XREF=UI-R-BJ1-avy-g-11-0-UI.s1 /CLONE=UI-R-BJ1-avy-g-11-0-UI /FEA=EST /CNT=7 /TID=Rn.13065.1 /TIER=ConsEnd /STK=0 /UG=Rn.13065 /UG_TITLE=ESTs BE115690 seryl-tRNA synthetase 2, mitochondrial Sars2 292759 NM_001106240 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006434 // seryl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004828 // serine-tRNA ligase activity // inferred from electronic annotation /// 0004828 // serine-tRNA ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1383253_at AI179795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179795 /DB_XREF=gi:3730433 /DB_XREF=EST223525 /CLONE=RSPCL90 /FEA=EST /CNT=7 /TID=Rn.17214.1 /TIER=ConsEnd /STK=0 /UG=Rn.17214 /UG_TITLE=ESTs AI179795 1383254_at BF403169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403169 /DB_XREF=gi:11391144 /DB_XREF=UI-R-CA0-bhs-d-12-0-UI.s1 /CLONE=UI-R-CA0-bhs-d-12-0-UI /FEA=EST /CNT=7 /TID=Rn.24242.1 /TIER=ConsEnd /STK=0 /UG=Rn.24242 /UG_TITLE=ESTs BF403169 1383255_at BE116202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116202 /DB_XREF=gi:8508307 /DB_XREF=UI-R-BS1-aya-f-01-0-UI.s1 /CLONE=UI-R-BS1-aya-f-01-0-UI /FEA=EST /CNT=7 /TID=Rn.38955.1 /TIER=ConsEnd /STK=0 /UG=Rn.38955 /UG_TITLE=ESTs, Weakly similar to S21347 hypothetical protein 3 - rat (R.norvegicus) BE116202 G patch domain and KOW motifs Gpkow 679890 NM_001109381 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation 1383256_at BF410997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410997 /DB_XREF=gi:11398972 /DB_XREF=UI-R-CN0-bmi-e-04-0-UI.s1 /CLONE=UI-R-CN0-bmi-e-04-0-UI /FEA=EST /CNT=7 /TID=Rn.15094.2 /TIER=ConsEnd /STK=0 /UG=Rn.15094 /UG_TITLE=ESTs, Moderately similar to G01522 acidic 82 kDa protein (H.sapiens) BF410997 1383257_at BE099787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099787 /DB_XREF=gi:8491667 /DB_XREF=UI-R-BJ1-atq-c-03-0-UI.s1 /CLONE=UI-R-BJ1-atq-c-03-0-UI /FEA=EST /CNT=7 /TID=Rn.8487.2 /TIER=ConsEnd /STK=0 /UG=Rn.8487 /UG_TITLE=ESTs BE099787 ataxin 2 binding protein 1 A2bp1 302920 NM_001106974 0005737 // cytoplasm // not recorded /// 0005802 // trans-Golgi network // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded 1383258_at BM383065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383065 /DB_XREF=gi:18183118 /DB_XREF=UI-R-DS0-cje-d-03-0-UI.s1 /CLONE=UI-R-DS0-cje-d-03-0-UI /FEA=EST /CNT=7 /TID=Rn.25086.1 /TIER=ConsEnd /STK=0 /UG=Rn.25086 /UG_TITLE=ESTs BM383065 1383259_at BF412819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412819 /DB_XREF=gi:11400808 /DB_XREF=UI-R-BT1-bnz-h-01-0-UI.s1 /CLONE=UI-R-BT1-bnz-h-01-0-UI /FEA=EST /CNT=7 /TID=Rn.16404.1 /TIER=ConsEnd /STK=0 /UG=Rn.16404 /UG_TITLE=ESTs BF412819 1383260_at BI289879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289879 /DB_XREF=gi:14947909 /DB_XREF=UI-R-DK0-cfp-d-03-0-UI.s1 /CLONE=UI-R-DK0-cfp-d-03-0-UI /FEA=EST /CNT=7 /TID=Rn.32501.2 /TIER=ConsEnd /STK=0 /UG=Rn.32501 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) BI289879 zinc finger protein 553 /// zinc finger protein 771 Znf553 /// Znf771 308991 /// 308992 XM_001080163 /// XM_219345 /// XM_219346 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1383261_at BF560105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF560105 /DB_XREF=gi:11669835 /DB_XREF=UI-R-A1-ew-h-07-0-UI.r1 /CLONE=UI-R-A1-ew-h-07-0-UI /FEA=EST /CNT=7 /TID=Rn.14888.1 /TIER=ConsEnd /STK=0 /UG=Rn.14888 /UG_TITLE=ESTs BF560105 1383262_at BG378159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378159 /DB_XREF=gi:13302631 /DB_XREF=UI-R-CV1-bvo-f-08-0-UI.s1 /CLONE=UI-R-CV1-bvo-f-08-0-UI /FEA=EST /CNT=7 /TID=Rn.17301.1 /TIER=ConsEnd /STK=0 /UG=Rn.17301 /UG_TITLE=ESTs BG378159 1383263_at BG664221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664221 /DB_XREF=gi:13886143 /DB_XREF=DRABAH08 /CLONE=DRABAH08 /FEA=EST /CNT=12 /TID=Rn.12119.2 /TIER=ConsEnd /STK=0 /UG=Rn.12119 /UG_TITLE=ESTs, Weakly similar to FMOD RAT FIBROMODULIN PRECURSOR (R.norvegicus) BG664221 osteoglycin Ogn 291015 NM_001106103 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383264_at BI294715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294715 /DB_XREF=gi:14957440 /DB_XREF=UI-R-DK0-ceb-c-04-0-UI.s1 /CLONE=UI-R-DK0-ceb-c-04-0-UI /FEA=EST /CNT=11 /TID=Rn.18037.1 /TIER=ConsEnd /STK=0 /UG=Rn.18037 /UG_TITLE=ESTs, Weakly similar to Human mRNA KIAA0066 predicted protein like (Caenorhabditis elegans) (C.elegans) BI294715 1383265_at BF408403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408403 /DB_XREF=gi:11396378 /DB_XREF=UI-R-BJ2-brc-d-02-0-UI.s1 /CLONE=UI-R-BJ2-brc-d-02-0-UI /FEA=EST /CNT=10 /TID=Rn.47741.1 /TIER=ConsEnd /STK=0 /UG=Rn.47741 /UG_TITLE=ESTs BF408403 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1383266_at AW144660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144660 /DB_XREF=gi:6164559 /DB_XREF=EST295038 /CLONE=RGIBZ74 /FEA=EST /CNT=10 /TID=Rn.40245.1 /TIER=ConsEnd /STK=0 /UG=Rn.40245 /UG_TITLE=ESTs, Weakly similar to A45054 probable intercellular signal transducer or transmitter Fz-1 - rat (R.norvegicus) AW144660 secreted frizzled-related protein 1 Sfrp1 84402 XM_001072532 /// XM_224987 0001649 // osteoblast differentiation // inferred from expression pattern /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001756 // somitogenesis // not recorded /// 0001843 // neural tube closure // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008584 // male gonad development // not recorded /// 0008585 // female gonad development // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // not recorded /// 0014034 // neural crest cell fate commitment // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0021915 // neural tube development // not recorded /// 0030097 // hemopoiesis // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from direct assay /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // traceable author statement /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030278 // regulation of ossification // inferred from mutant phenotype /// 0030279 // negative regulation of ossification // not recorded /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0033689 // negative regulation of osteoblast proliferation // not recorded /// 0035019 // somatic stem cell maintenance // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043508 // negative regulation of JUN kinase activity // inferred from electronic annotation /// 0043508 // negative regulation of JUN kinase activity // not recorded /// 0045600 // positive regulation of fat cell differentiation // not recorded /// 0045668 // negative regulation of osteoblast differentiation // not recorded /// 0045671 // negative regulation of osteoclast differentiation // inferred from mutant phenotype /// 0045671 // negative regulation of osteoclast differentiation // not recorded /// 0046546 // development of primary male sexual characteristics // not recorded /// 0048147 // negative regulation of fibroblast proliferation // not recorded /// 0048546 // digestive tract morphogenesis // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060071 // Wnt receptor signaling pathway, planar cell polarity pathway // inferred from electronic annotation /// 0060071 // Wnt receptor signaling pathway, planar cell polarity pathway // not recorded /// 0060346 // bone trabecula formation // not recorded /// 0060527 // prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis // inferred from electronic annotation /// 0060527 // prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis // not recorded /// 0060687 // regulation of branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0060687 // regulation of branching involved in prostate gland morphogenesis // not recorded /// 0071380 // cellular response to prostaglandin E stimulus // inferred from expression pattern /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // inferred from direct assay /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0090175 // regulation of establishment of planar polarity // not recorded /// 0090175 // regulation of establishment of planar polarity // inferred from electronic annotation /// 0090246 // convergent extension involved in somitogenesis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0005109 // frizzled binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017147 // Wnt-protein binding // inferred from electronic annotation /// 0017147 // Wnt-protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1383267_at BF554347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554347 /DB_XREF=gi:11664077 /DB_XREF=UI-R-C0-hv-d-06-0-UI.r1 /CLONE=UI-R-C0-hv-d-06-0-UI /FEA=EST /CNT=10 /TID=Rn.17174.1 /TIER=ConsEnd /STK=0 /UG=Rn.17174 /UG_TITLE=ESTs BF554347 1383268_at BG667725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667725 /DB_XREF=gi:13889647 /DB_XREF=DRABKA09 /CLONE=DRABKA09 /FEA=EST /CNT=9 /TID=Rn.15644.1 /TIER=ConsEnd /STK=0 /UG=Rn.15644 /UG_TITLE=ESTs BG667725 1383269_at BF556833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556833 /DB_XREF=gi:11666563 /DB_XREF=UI-R-E1-fn-d-08-0-UI.r1 /CLONE=UI-R-E1-fn-d-08-0-UI /FEA=EST /CNT=9 /TID=Rn.9013.1 /TIER=ConsEnd /STK=0 /UG=Rn.9013 /UG_TITLE=ESTs, Weakly similar to RNG1_HUMAN RING1 PROTEIN (H.sapiens) BF556833 ring finger protein 2 Rnf2 304850 NM_001025667 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000278 // mitotic cell cycle // not recorded /// 0001702 // gastrulation with mouth forming second // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0009948 // anterior/posterior axis specification // not recorded /// 0016574 // histone ubiquitination // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0000151 // ubiquitin ligase complex // not recorded /// 0000151 // ubiquitin ligase complex // inferred from sequence or structural similarity /// 0001739 // sex chromatin // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016604 // nuclear body // not recorded /// 0031519 // PcG protein complex // not recorded /// 0071339 // MLL1 complex // not recorded /// 0071339 // MLL1 complex // inferred from sequence or structural similarity 0003682 // chromatin binding // not recorded /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0071535 // RING-like zinc finger domain binding // not recorded 1383270_at BF565482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565482 /DB_XREF=gi:11675212 /DB_XREF=UI-R-BO1-ajm-c-09-0-UI.r1 /CLONE=UI-R-BO1-ajm-c-09-0-UI /FEA=EST /CNT=9 /TID=Rn.54973.1 /TIER=ConsEnd /STK=0 /UG=Rn.54973 /UG_TITLE=ESTs BF565482 similar to hypothetical protein RGD1310571 361301 NM_001014147 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 1383271_at BM391624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391624 /DB_XREF=gi:18191677 /DB_XREF=UI-R-DY0-ckr-p-21-0-UI.s1 /CLONE=UI-R-DY0-ckr-p-21-0-UI /FEA=EST /CNT=9 /TID=Rn.30179.1 /TIER=ConsEnd /STK=0 /UG=Rn.30179 /UG_TITLE=ESTs BM391624 coiled-coil domain containing 59 Ccdc59 314799 NM_001108090 0005515 // protein binding // not recorded 1383272_at BI289784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289784 /DB_XREF=gi:14947720 /DB_XREF=UI-R-DK0-cfo-b-08-0-UI.s1 /CLONE=UI-R-DK0-cfo-b-08-0-UI /FEA=EST /CNT=9 /TID=Rn.6582.1 /TIER=ConsEnd /STK=0 /UG=Rn.6582 /UG_TITLE=ESTs, Weakly similar to PA26 RAT 85 KDA CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 (R.norvegicus) BI289784 ankyrin repeat and SOCS box-containing 11 Asb11 302666 NM_001106962 0023034 // intracellular signaling pathway // inferred from electronic annotation 1383273_a_at AA956005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956005 /DB_XREF=gi:4238400 /DB_XREF=UI-R-E1-fb-h-04-0-UI.s1 /CLONE=UI-R-E1-fb-h-04-0-UI /FEA=EST /CNT=9 /TID=Rn.9243.1 /TIER=ConsEnd /STK=0 /UG=Rn.9243 /UG_TITLE=ESTs, Weakly similar to ROK_HUMAN HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN K (R.norvegicus) AA956005 poly(rC) binding protein 3 Pcbp3 294336 NM_001011945 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded 0003723 // RNA binding // inferred from electronic annotation 1383274_at AA956005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956005 /DB_XREF=gi:4238400 /DB_XREF=UI-R-E1-fb-h-04-0-UI.s1 /CLONE=UI-R-E1-fb-h-04-0-UI /FEA=EST /CNT=9 /TID=Rn.9243.1 /TIER=ConsEnd /STK=0 /UG=Rn.9243 /UG_TITLE=ESTs, Weakly similar to ROK_HUMAN HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN K (R.norvegicus) AA956005 poly(rC) binding protein 3 Pcbp3 294336 NM_001011945 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded 0003723 // RNA binding // inferred from electronic annotation 1383275_at BF523098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523098 /DB_XREF=gi:11631065 /DB_XREF=UI-R-C2p-rr-d-03-0-UI.r1 /CLONE=UI-R-C2p-rr-d-03-0-UI /FEA=EST /CNT=8 /TID=Rn.7524.1 /TIER=ConsEnd /STK=0 /UG=Rn.7524 /UG_TITLE=ESTs BF523098 1383276_at BG664988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664988 /DB_XREF=gi:13886910 /DB_XREF=DRABWC07 /CLONE=DRABWC07 /FEA=EST /CNT=8 /TID=Rn.29252.1 /TIER=ConsEnd /STK=0 /UG=Rn.29252 /UG_TITLE=ESTs BG664988 LanC lantibiotic synthetase component C-like 2 (bacterial) Lancl2 362375 NM_001014187 0009789 // positive regulation of abscisic acid mediated signaling pathway // inferred from electronic annotation /// 0009789 // positive regulation of abscisic acid mediated signaling pathway // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0010314 // phosphatidylinositol-5-phosphate binding // inferred from electronic annotation /// 0010314 // phosphatidylinositol-5-phosphate binding // not recorded /// 0032266 // phosphatidylinositol-3-phosphate binding // inferred from electronic annotation /// 0032266 // phosphatidylinositol-3-phosphate binding // not recorded /// 0070273 // phosphatidylinositol-4-phosphate binding // inferred from electronic annotation /// 0070273 // phosphatidylinositol-4-phosphate binding // not recorded 1383277_at H32309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H32309 /DB_XREF=gi:977726 /DB_XREF=EST107273 /CLONE=RPCBR95 /FEA=EST /CNT=8 /TID=Rn.17055.1 /TIER=ConsEnd /STK=0 /UG=Rn.17055 /UG_TITLE=ESTs H32309 protein phosphatase 1, regulatory (inhibitor) subunit 7 Ppp1r7 301618 NM_001009825 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383278_at BF558819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558819 /DB_XREF=gi:11668549 /DB_XREF=UI-R-A1-du-e-06-0-UI.r1 /CLONE=UI-R-A1-du-e-06-0-UI /FEA=EST /CNT=8 /TID=Rn.7224.1 /TIER=ConsEnd /STK=0 /UG=Rn.7224 /UG_TITLE=ESTs BF558819 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 Agap1 316611 NM_001108230 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005525 // GTP binding // inferred from electronic annotation /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1383279_at BE119554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119554 /DB_XREF=gi:8511659 /DB_XREF=UI-R-CA0-bag-b-05-0-UI.s1 /CLONE=UI-R-CA0-bag-b-05-0-UI /FEA=EST /CNT=8 /TID=Rn.28201.1 /TIER=ConsEnd /STK=0 /UG=Rn.28201 /UG_TITLE=ESTs, Weakly similar to T31081 cca3 protein - rat (R.norvegicus) BE119554 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 Rcbtb2 290363 NM_199084 0005515 // protein binding // inferred from electronic annotation 1383280_at BG669130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669130 /DB_XREF=gi:13891037 /DB_XREF=DRN05G03 /CLONE=DRN05G03 /FEA=EST /CNT=8 /TID=Rn.12318.1 /TIER=ConsEnd /STK=0 /UG=Rn.12318 /UG_TITLE=ESTs BG669130 1383281_at AA866227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866227 /DB_XREF=gi:4229099 /DB_XREF=UI-R-A0-bg-e-12-0-UI.s1 /CLONE=UI-R-A0-bg-e-12-0-UI /FEA=EST /CNT=8 /TID=Rn.3509.1 /TIER=ConsEnd /STK=0 /UG=Rn.3509 /UG_TITLE=ESTs, Weakly similar to W06B4.2.p (Caenorhabditis elegans) (C.elegans) AA866227 similar to RIKEN cDNA 1110005A03 RGD1306284 287918 NM_001008283 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1383282_at BF543075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543075 /DB_XREF=gi:11634182 /DB_XREF=UI-R-AF1-aap-g-06-0-UI.r1 /CLONE=UI-R-AF1-aap-g-06-0-UI /FEA=EST /CNT=8 /TID=Rn.2823.1 /TIER=ConsEnd /STK=0 /UG=Rn.2823 /UG_TITLE=ESTs BF543075 THAP domain containing 11 Thap11 307806 NM_001107422 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1383283_at BM385645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385645 /DB_XREF=gi:18185698 /DB_XREF=UI-R-DM1-ckd-l-16-0-UI.s1 /CLONE=UI-R-DM1-ckd-l-16-0-UI /FEA=EST /CNT=8 /TID=Rn.36925.1 /TIER=ConsEnd /STK=0 /UG=Rn.36925 /UG_TITLE=ESTs BM385645 oculocerebrorenal syndrome of Lowe Ocrl 317576 NM_001108256 0007165 // signal transduction // inferred from electronic annotation /// 0046856 // phosphoinositide dephosphorylation // not recorded 0005622 // intracellular // inferred from electronic annotation 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0004439 // phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity // not recorded 1383284_at BG372598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372598 /DB_XREF=gi:13269135 /DB_XREF=UI-R-CV1-brs-b-06-0-UI.s1 /CLONE=UI-R-CV1-brs-b-06-0-UI /FEA=EST /CNT=8 /TID=Rn.8638.1 /TIER=ConsEnd /STK=0 /UG=Rn.8638 /UG_TITLE=ESTs BG372598 1383285_at BG671375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671375 /DB_XREF=gi:13893474 /DB_XREF=DRNBQB06 /CLONE=DRNBQB06 /FEA=EST /CNT=8 /TID=Rn.24880.1 /TIER=ConsEnd /STK=0 /UG=Rn.24880 /UG_TITLE=ESTs BG671375 1383286_at AW919349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919349 /DB_XREF=gi:8085143 /DB_XREF=EST350653 /CLONE=RGIFT11 /FEA=EST /CNT=8 /TID=Rn.22995.1 /TIER=ConsEnd /STK=0 /UG=Rn.22995 /UG_TITLE=ESTs, Highly similar to JC7128 pleckstrin 2 - mouse (M.musculus) AW919349 pleckstrin 2 Plek2 314260 NM_001114180 0023034 // intracellular signaling pathway // inferred from electronic annotation 1383287_at BE329232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329232 /DB_XREF=gi:9203008 /DB_XREF=hq38f09.x1 /CLONE=IMAGE:3121673 /FEA=EST /CNT=8 /TID=Rn.12768.1 /TIER=ConsEnd /STK=0 /UG=Rn.12768 /UG_TITLE=ESTs, Moderately similar to A53184 myc far upstream element-binding protein (H.sapiens) BE329232 far upstream element (FUSE) binding protein 1 Fubp1 654496 NM_001037653 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1383288_at BE117716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117716 /DB_XREF=gi:8509821 /DB_XREF=UI-R-BS1-azf-b-02-0-UI.s1 /CLONE=UI-R-BS1-azf-b-02-0-UI /FEA=EST /CNT=8 /TID=Rn.6515.1 /TIER=ConsEnd /STK=0 /UG=Rn.6515 /UG_TITLE=ESTs BE117716 Mdm2 p53 binding protein homolog (mouse) Mdm2 314856 NM_001108099 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006461 // protein complex assembly // not recorded /// 0007089 // traversing start control point of mitotic cell cycle // not recorded /// 0009636 // response to toxin // inferred from expression pattern /// 0009743 // response to carbohydrate stimulus // inferred from expression pattern /// 0010039 // response to iron ion // inferred from expression pattern /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0010629 // negative regulation of gene expression // inferred from mutant phenotype /// 0010955 // negative regulation of protein maturation by peptide bond cleavage // inferred from mutant phenotype /// 0016567 // protein ubiquitination // inferred from mutant phenotype /// 0016567 // protein ubiquitination // not recorded /// 0030163 // protein catabolic process // not recorded /// 0031648 // protein destabilization // not recorded /// 0032026 // response to magnesium ion // inferred from expression pattern /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0034504 // protein localization in nucleus // not recorded /// 0042176 // regulation of protein catabolic process // not recorded /// 0042220 // response to cocaine // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0043154 // negative regulation of caspase activity // inferred from mutant phenotype /// 0043278 // response to morphine // inferred from expression pattern /// 0043518 // negative regulation of DNA damage response, signal transduction by p53 class mediator // not recorded /// 0045184 // establishment of protein localization // not recorded /// 0045472 // response to ether // inferred from expression pattern /// 0045787 // positive regulation of cell cycle // not recorded /// 0045931 // positive regulation of mitotic cell cycle // not recorded /// 0046827 // positive regulation of protein export from nucleus // inferred from mutant phenotype /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0070301 // cellular response to hydrogen peroxide // inferred from expression pattern /// 0071157 // negative regulation of cell cycle arrest // inferred from electronic annotation /// 0071157 // negative regulation of cell cycle arrest // not recorded /// 0071229 // cellular response to acid // inferred from expression pattern /// 0071236 // cellular response to antibiotic // inferred from expression pattern /// 0071301 // cellular response to vitamin B1 // inferred from expression pattern /// 0071310 // cellular response to organic substance // inferred from expression pattern /// 0071312 // cellular response to alkaloid // inferred from expression pattern /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern /// 0071375 // cellular response to peptide hormone stimulus // inferred from expression pattern /// 0071391 // cellular response to estrogen stimulus // inferred from expression pattern /// 0071407 // cellular response to organic cyclic substance // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern /// 0071494 // cellular response to UV-C // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016604 // nuclear body // not recorded /// 0030666 // endocytic vesicle membrane // not recorded /// 0043234 // protein complex // not recorded /// 0045202 // synapse // inferred from direct assay 0002039 // p53 binding // inferred from physical interaction /// 0002039 // p53 binding // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from mutant phenotype /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0010843 // promoter binding // inferred from direct assay /// 0017163 // basal transcription repressor activity // not recorded /// 0019899 // enzyme binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042975 // peroxisome proliferator activated receptor binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1383289_at BG373214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373214 /DB_XREF=gi:13269751 /DB_XREF=UI-R-CV1-brw-a-12-0-UI.s1 /CLONE=UI-R-CV1-brw-a-12-0-UI /FEA=EST /CNT=8 /TID=Rn.24017.1 /TIER=ConsEnd /STK=0 /UG=Rn.24017 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) BG373214 NIF3 NGG1 interacting factor 3-like 1 (S. pombe) Nif3l1 301431 NM_001024763 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded 1383290_at BI280343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280343 /DB_XREF=gi:14929043 /DB_XREF=UI-R-DE0-cag-h-07-0-UI.s1 /CLONE=UI-R-DE0-cag-h-07-0-UI /FEA=EST /CNT=8 /TID=Rn.44189.1 /TIER=ConsEnd /STK=0 /UG=Rn.44189 /UG_TITLE=ESTs, Weakly similar to S53457 dominant autoantigen gp 330 - rat (R.norvegicus) BI280343 serine peptidase inhibitor, Kunitz type 1 Spint1 311331 NM_001004265 0001892 // embryonic placenta development // not recorded /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0060670 // branching involved in embryonic placenta morphogenesis // not recorded /// 0060670 // branching involved in embryonic placenta morphogenesis // inferred from electronic annotation /// 0060674 // placenta blood vessel development // not recorded /// 0060674 // placenta blood vessel development // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1383291_at BF282631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282631 /DB_XREF=gi:11213701 /DB_XREF=EST447222 /CLONE=RGIDR07 /FEA=EST /CNT=7 /TID=Rn.15993.1 /TIER=ConsEnd /STK=0 /UG=Rn.15993 /UG_TITLE=ESTs, Moderately similar to CO7_HUMAN COMPLEMENT COMPONENT C7 PRECURSO (H.sapiens) BF282631 complement component 7 /// tubulin, beta 2c C7 /// Tubb2c 117517 /// 296554 NM_199094 /// XM_001054007 /// XM_226803 0006883 // cellular sodium ion homeostasis // inferred from mutant phenotype /// 0006917 // induction of apoptosis // traceable author statement /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0005579 // membrane attack complex // traceable author statement /// 0005829 // cytosol // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1383292_at AI599126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599126 /DB_XREF=gi:4608174 /DB_XREF=EST250829 /CLONE=REMEB42 /FEA=EST /CNT=7 /TID=Rn.8452.1 /TIER=ConsEnd /STK=0 /UG=Rn.8452 /UG_TITLE=ESTs AI599126 inner centromere protein Incenp 293733 NM_001106335 0000910 // cytokinesis // not recorded /// 0007059 // chromosome segregation // not recorded 0000775 // chromosome, centromeric region // not recorded /// 0000776 // kinetochore // not recorded /// 0000795 // synaptonemal complex // not recorded /// 0000801 // central element // not recorded /// 0005721 // centromeric heterochromatin // not recorded /// 0005819 // spindle // not recorded /// 0030496 // midbody // not recorded /// 0043234 // protein complex // not recorded 0005515 // protein binding // not recorded 1383293_at BG669441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669441 /DB_XREF=gi:13891363 /DB_XREF=DRNAAFD10 /CLONE=DRNAAFD10 /FEA=EST /CNT=7 /TID=Rn.19057.1 /TIER=ConsEnd /STK=0 /UG=Rn.19057 /UG_TITLE=ESTs BG669441 1383294_at BF412731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412731 /DB_XREF=gi:11400720 /DB_XREF=UI-R-BT1-bnt-e-12-0-UI.s1 /CLONE=UI-R-BT1-bnt-e-12-0-UI /FEA=EST /CNT=7 /TID=Rn.46388.1 /TIER=ConsEnd /STK=0 /UG=Rn.46388 /UG_TITLE=ESTs BF412731 prodynorphin Pdyn 29190 NM_019374 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0046928 // regulation of neurotransmitter secretion // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0001515 // opioid peptide activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1383295_at AA901194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901194 /DB_XREF=gi:4233695 /DB_XREF=UI-R-E0-dc-h-09-0-UI.s1 /CLONE=UI-R-E0-dc-h-09-0-UI /FEA=EST /CNT=7 /TID=Rn.16134.1 /TIER=ConsEnd /STK=0 /UG=Rn.16134 /UG_TITLE=ESTs AA901194 1383296_a_at BF397646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397646 /DB_XREF=gi:11382630 /DB_XREF=UI-R-BS2-bed-a-01-0-UI.s1 /CLONE=UI-R-BS2-bed-a-01-0-UI /FEA=EST /CNT=7 /TID=Rn.23667.1 /TIER=ConsEnd /STK=0 /UG=Rn.23667 /UG_TITLE=ESTs BF397646 exportin 4 Xpo4 290280 NM_001106042 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383297_at BI275422 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275422 /DB_XREF=gi:14887272 /DB_XREF=UI-R-CX0-bww-d-03-0-UI.s1 /CLONE=UI-R-CX0-bww-d-03-0-UI /FEA=EST /CNT=7 /TID=Rn.64064.1 /TIER=ConsEnd /STK=0 /UG=Rn.64064 /UG_TITLE=ESTs, Weakly similar to LIS1 MOUSE PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB ALPHA SUBUNIT (R.norvegicus) BI275422 WD repeat domain 5 Wdr5 362093 NM_001039034 0001501 // skeletal system development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0034968 // histone lysine methylation // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051568 // histone H3-K4 methylation // not recorded /// 0051568 // histone H3-K4 methylation // inferred from sequence or structural similarity 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0035097 // histone methyltransferase complex // not recorded /// 0035097 // histone methyltransferase complex // inferred from sequence or structural similarity /// 0071339 // MLL1 complex // not recorded /// 0071339 // MLL1 complex // inferred from sequence or structural similarity 0005515 // protein binding // not recorded /// 0035064 // methylated histone residue binding // inferred from sequence or structural similarity /// 0042800 // histone methyltransferase activity (H3-K4 specific) // not recorded 1383298_at BF546148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546148 /DB_XREF=gi:11637255 /DB_XREF=UI-R-C1-kk-h-07-0-UI.r1 /CLONE=UI-R-C1-kk-h-07-0-UI /FEA=EST /CNT=7 /TID=Rn.27612.1 /TIER=ConsEnd /STK=0 /UG=Rn.27612 /UG_TITLE=ESTs BF546148 LOC363015 RGD1310444 363015 XM_002726985 /// XM_002729871 0003676 // nucleic acid binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383299_at BI291730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291730 /DB_XREF=gi:14951558 /DB_XREF=UI-R-DM0-cis-f-16-0-UI.s1 /CLONE=UI-R-DM0-cis-f-16-0-UI /FEA=EST /CNT=7 /TID=Rn.19762.1 /TIER=ConsEnd /STK=0 /UG=Rn.19762 /UG_TITLE=ESTs BI291730 1383300_at BF550390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550390 /DB_XREF=gi:11660120 /DB_XREF=UI-R-A1-ef-f-08-0-UI.r1 /CLONE=UI-R-A1-ef-f-08-0-UI /FEA=EST /CNT=7 /TID=Rn.22245.1 /TIER=ConsEnd /STK=0 /UG=Rn.22245 /UG_TITLE=ESTs BF550390 kelch-like 24 (Drosophila) Klhl24 303803 NM_181473 0005737 // cytoplasm // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043204 // perikaryon // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1383301_at AI237554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237554 /DB_XREF=gi:3831060 /DB_XREF=EST234116 /CLONE=RPLDA54 /FEA=EST /CNT=7 /TID=Rn.11782.1 /TIER=ConsEnd /STK=0 /UG=Rn.11782 /UG_TITLE=ESTs AI237554 hypothetical protein LOC498154 LOC498154 498154 NM_001025033 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383302_at BM384926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384926 /DB_XREF=gi:18184979 /DB_XREF=UI-R-CN1-cjl-b-18-0-UI.s2 /CLONE=UI-R-CN1-cjl-b-18-0-UI /FEA=EST /CNT=7 /TID=Rn.32136.1 /TIER=ConsEnd /STK=0 /UG=Rn.32136 /UG_TITLE=ESTs, Weakly similar to HS44 MOUSE HEAT SHOCK 40 KDA PROTEIN 4 (R.norvegicus) BM384926 DnaJ (Hsp40) homolog, subfamily B, member 1 Dnajb1 361384 NM_001108441 0006457 // protein folding // inferred from electronic annotation /// 0051085 // chaperone mediated protein folding requiring cofactor // not recorded /// 0070389 // chaperone cofactor-dependent protein refolding // not recorded 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1383303_at BI282211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282211 /DB_XREF=gi:14932753 /DB_XREF=UI-R-CU0s-cbx-h-09-0-UI.s1 /CLONE=UI-R-CU0s-cbx-h-09-0-UI /FEA=EST /CNT=7 /TID=Rn.28004.1 /TIER=ConsEnd /STK=0 /UG=Rn.28004 /UG_TITLE=ESTs, Moderately similar to A61209 hypertension-associated protein SA - rat (R.norvegicus) BI282211 acyl-CoA synthetase medium-chain family member 3 Acsm3 24763 NM_033231 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015645 // fatty acid ligase activity // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047760 // butyrate-CoA ligase activity // inferred from electronic annotation 1383304_at AA996870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996870 /DB_XREF=gi:4280634 /DB_XREF=UI-R-C0-hh-b-02-0-UI.s1 /CLONE=UI-R-C0-hh-b-02-0-UI /FEA=EST /CNT=7 /TID=Rn.50972.1 /TIER=ConsEnd /STK=0 /UG=Rn.50972 /UG_TITLE=ESTs AA996870 1383305_at AW530081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530081 /DB_XREF=gi:7172495 /DB_XREF=UI-R-C4-ald-d-02-0-UI.s1 /CLONE=UI-R-C4-ald-d-02-0-UI /FEA=EST /CNT=7 /TID=Rn.23949.1 /TIER=ConsEnd /STK=0 /UG=Rn.23949 /UG_TITLE=ESTs AW530081 1383306_at AI013468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013468 /DB_XREF=gi:3227524 /DB_XREF=EST208143 /CLONE=RSPBL91 /FEA=EST /CNT=7 /TID=Rn.22089.1 /TIER=ConsEnd /STK=0 /UG=Rn.22089 /UG_TITLE=ESTs AI013468 1383307_at AI717533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717533 /DB_XREF=gi:5034789 /DB_XREF=UI-R-Y0-acp-c-09-0-UI.s1 /CLONE=UI-R-Y0-acp-c-09-0-UI /FEA=EST /CNT=7 /TID=Rn.34474.1 /TIER=ConsEnd /STK=0 /UG=Rn.34474 /UG_TITLE=ESTs AI717533 transmembrane protein 186 Tmem186 497863 NM_001025756 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1383308_a_at AI071048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071048 /DB_XREF=gi:3396153 /DB_XREF=UI-R-C1-lo-a-11-0-UI.s1 /CLONE=UI-R-C1-lo-a-11-0-UI /FEA=EST /CNT=1 /TID=Rn.17087.2 /TIER=ConsEnd /STK=1 /UG=Rn.17087 /UG_TITLE=ESTs AI071048 ring finger and WD repeat domain 3 Rfwd3 361409 XM_001075875 /// XM_341690 0010212 // response to ionizing radiation // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0031571 // mitotic cell cycle G1/S DNA damage checkpoint // not recorded 0005634 // nucleus // not recorded 0002039 // p53 binding // not recorded /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0070215 // MDM2 binding // not recorded 1383309_at BF522030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522030 /DB_XREF=gi:11629997 /DB_XREF=UI-R-Y0-aaz-b-12-0-UI.r2 /CLONE=UI-R-Y0-aaz-b-12-0-UI /FEA=EST /CNT=7 /TID=Rn.32316.1 /TIER=ConsEnd /STK=0 /UG=Rn.32316 /UG_TITLE=ESTs, Weakly similar to CAG6 RAT CMP-N-ACETYLNEURAMINATE-BETA-1,4-GALACTOSIDE ALPHA-2,3-SIALYLTRANSFERASE (R.norvegicus) BF522030 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 St3gal6 304023 NM_207602 0006486 // protein glycosylation // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation 0008373 // sialyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1383310_at AI030892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030892 /DB_XREF=gi:3248718 /DB_XREF=UI-R-C0-jf-a-11-0-UI.s1 /CLONE=UI-R-C0-jf-a-11-0-UI /FEA=EST /CNT=7 /TID=Rn.12220.1 /TIER=ConsEnd /STK=0 /UG=Rn.12220 /UG_TITLE=ESTs, Moderately similar to S17100 P1.m protein - mouse (M.musculus) AI030892 1383311_at AI716026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716026 /DB_XREF=gi:5033279 /DB_XREF=UI-R-Y0-acd-b-07-0-UI.s1 /CLONE=UI-R-Y0-acd-b-07-0-UI /FEA=EST /CNT=7 /TID=Rn.14647.1 /TIER=ConsEnd /STK=0 /UG=Rn.14647 /UG_TITLE=ESTs AI716026 myotubularin related protein 11 Mtmr11 689613 NM_001191096 /// XM_001069837 /// XM_002726026 0016311 // dephosphorylation // inferred from electronic annotation 0016791 // phosphatase activity // inferred from electronic annotation 1383312_at BF396751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396751 /DB_XREF=gi:11381732 /DB_XREF=UI-R-BS2-beu-g-04-0-UI.s1 /CLONE=UI-R-BS2-beu-g-04-0-UI /FEA=EST /CNT=7 /TID=Rn.12292.1 /TIER=ConsEnd /STK=0 /UG=Rn.12292 /UG_TITLE=ESTs, Moderately similar to AF196779 9 JM11 protein (H.sapiens) BF396751 1383313_at BE120149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120149 /DB_XREF=gi:8512254 /DB_XREF=UI-R-CA0-bap-b-07-0-UI.s1 /CLONE=UI-R-CA0-bap-b-07-0-UI /FEA=EST /CNT=7 /TID=Rn.15515.1 /TIER=ConsEnd /STK=0 /UG=Rn.15515 /UG_TITLE=ESTs, Highly similar to T46399 hypothetical protein DKFZp434N2420.1 (H.sapiens) BE120149 checkpoint with forkhead and ring finger domains Chfr 288734 NM_001009258 0000209 // protein polyubiquitination // not recorded /// 0000209 // protein polyubiquitination // inferred from sequence or structural similarity /// 0000209 // protein polyubiquitination // inferred from electronic annotation /// 0000278 // mitotic cell cycle // inferred from electronic annotation /// 0000278 // mitotic cell cycle // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0007093 // mitotic cell cycle checkpoint // not recorded /// 0007093 // mitotic cell cycle checkpoint // inferred from sequence or structural similarity /// 0016567 // protein ubiquitination // not recorded /// 0019941 // modification-dependent protein catabolic process // not recorded /// 0019941 // modification-dependent protein catabolic process // inferred from sequence or structural similarity /// 0019941 // modification-dependent protein catabolic process // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0016605 // PML body // not recorded /// 0016605 // PML body // inferred from sequence or structural similarity /// 0016605 // PML body // inferred from electronic annotation 0000166 // nucleotide binding // not recorded /// 0000166 // nucleotide binding // inferred from sequence or structural similarity /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383314_at BE110098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110098 /DB_XREF=gi:8502203 /DB_XREF=UI-R-BJ1-avf-a-08-0-UI.s1 /CLONE=UI-R-BJ1-avf-a-08-0-UI /FEA=EST /CNT=7 /TID=Rn.12761.1 /TIER=ConsEnd /STK=0 /UG=Rn.12761 /UG_TITLE=ESTs BE110098 transmembrane protein 51 Tmem51 500578 NM_001109273 1383315_at AW434208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434208 /DB_XREF=gi:6965515 /DB_XREF=UI-R-BJ0p-aft-d-11-0-UI.s1 /CLONE=UI-R-BJ0p-aft-d-11-0-UI /FEA=EST /CNT=7 /TID=Rn.8672.1 /TIER=ConsEnd /STK=0 /UG=Rn.8672 /UG_TITLE=ESTs AW434208 tsukushin Tsku 308843 NM_001009965 0005576 // extracellular region // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1383316_at BF409313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409313 /DB_XREF=gi:11397288 /DB_XREF=UI-R-CA1-ble-e-12-0-UI.s1 /CLONE=UI-R-CA1-ble-e-12-0-UI /FEA=EST /CNT=7 /TID=Rn.60559.1 /TIER=ConsEnd /STK=0 /UG=Rn.60559 /UG_TITLE=ESTs BF409313 HD domain containing 2 Hddc2 361462 NM_001108460 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation 1383317_at AA964887 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964887 /DB_XREF=gi:4279761 /DB_XREF=UI-R-C0-gr-d-05-0-UI.s1 /CLONE=UI-R-C0-gr-d-05-0-UI /FEA=EST /CNT=7 /TID=Rn.11940.1 /TIER=ConsEnd /STK=0 /UG=Rn.11940 /UG_TITLE=ESTs AA964887 1383318_at BE100780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100780 /DB_XREF=gi:8492678 /DB_XREF=UI-R-BJ1-auf-c-08-0-UI.s1 /CLONE=UI-R-BJ1-auf-c-08-0-UI /FEA=EST /CNT=7 /TID=Rn.29866.1 /TIER=ConsEnd /STK=0 /UG=Rn.29866 /UG_TITLE=ESTs BE100780 1383319_at BI293444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293444 /DB_XREF=gi:14954943 /DB_XREF=UI-R-DK0-cdq-e-09-0-UI.s1 /CLONE=UI-R-DK0-cdq-e-09-0-UI /FEA=EST /CNT=7 /TID=Rn.24752.1 /TIER=ConsEnd /STK=0 /UG=Rn.24752 /UG_TITLE=ESTs, Weakly similar to T16491 hypothetical protein F57F10.1 - Caenorhabditis elegans (C.elegans) BI293444 solute carrier family 4, sodium bicarbonate transporter-like, member 11 Slc4a11 311423 NM_001107775 0006810 // transport // inferred from electronic annotation /// 0006814 // sodium ion transport // not recorded /// 0006820 // anion transport // inferred from electronic annotation /// 0009401 // phosphoenolpyruvate-dependent sugar phosphotransferase system // inferred from electronic annotation /// 0015701 // bicarbonate transport // not recorded /// 0015992 // proton transport // not recorded /// 0030003 // cellular cation homeostasis // not recorded /// 0046713 // boron transport // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005272 // sodium channel activity // not recorded /// 0005351 // sugar:hydrogen symporter activity // inferred from electronic annotation /// 0005452 // inorganic anion exchanger activity // inferred from electronic annotation /// 0015106 // bicarbonate transmembrane transporter activity // not recorded /// 0015252 // hydrogen ion channel activity // not recorded /// 0046715 // boron transmembrane transporter activity // not recorded 1383320_at AI137137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137137 /DB_XREF=gi:3637914 /DB_XREF=UI-R-C2p-oe-g-06-0-UI.s1 /CLONE=UI-R-C2p-oe-g-06-0-UI /FEA=EST /CNT=7 /TID=Rn.22791.1 /TIER=ConsEnd /STK=0 /UG=Rn.22791 /UG_TITLE=ESTs, Moderately similar to TYROSINE-PROTEIN KINASE LYN (R.norvegicus) AI137137 lymphocyte-specific protein tyrosine kinase Lck 313050 NM_001100709 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006882 // cellular zinc ion homeostasis // not recorded /// 0006915 // apoptosis // inferred from expression pattern /// 0006917 // induction of apoptosis // not recorded /// 0006919 // activation of caspase activity // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007568 // aging // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from mutant phenotype /// 0010038 // response to metal ion // inferred from direct assay /// 0010043 // response to zinc ion // inferred from expression pattern /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0030217 // T cell differentiation // not recorded /// 0042493 // response to drug // not recorded /// 0042542 // response to hydrogen peroxide // inferred from direct assay /// 0045588 // positive regulation of gamma-delta T cell differentiation // inferred from electronic annotation /// 0045588 // positive regulation of gamma-delta T cell differentiation // not recorded /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0050853 // B cell receptor signaling pathway // inferred from electronic annotation /// 0050853 // B cell receptor signaling pathway // not recorded /// 0050856 // regulation of T cell receptor signaling pathway // inferred from electronic annotation /// 0050856 // regulation of T cell receptor signaling pathway // not recorded /// 0050870 // positive regulation of T cell activation // not recorded /// 0051209 // release of sequestered calcium ion into cytosol // inferred from electronic annotation /// 0051209 // release of sequestered calcium ion into cytosol // not recorded /// 0070474 // positive regulation of uterine smooth muscle contraction // inferred from mutant phenotype 0000242 // pericentriolar material // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045121 // membrane raft // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // not recorded /// 0003823 // antigen binding // inferred from physical interaction /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0032403 // protein complex binding // inferred from direct assay /// 0042169 // SH2 domain binding // not recorded /// 0042609 // CD4 receptor binding // not recorded /// 0042610 // CD8 receptor binding // not recorded /// 0043548 // phosphoinositide 3-kinase binding // not recorded /// 0051117 // ATPase binding // not recorded 1383321_at BG376248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376248 /DB_XREF=gi:13300720 /DB_XREF=UI-R-CU0-bus-c-06-0-UI.s1 /CLONE=UI-R-CU0-bus-c-06-0-UI /FEA=EST /CNT=7 /TID=Rn.25509.2 /TIER=ConsEnd /STK=0 /UG=Rn.25509 /UG_TITLE=ESTs, Highly similar to TST1 MOUSE PROTEIN-TYROSINE SULFOTRANSFERASE 1 (M.musculus) BG376248 tyrosylprotein sulfotransferase 1 Tpst1 288617 NM_001011903 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0008476 // protein-tyrosine sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1383322_at BG375198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375198 /DB_XREF=gi:13299670 /DB_XREF=UI-R-CV1-bsu-c-11-0-UI.s1 /CLONE=UI-R-CV1-bsu-c-11-0-UI /FEA=EST /CNT=7 /TID=Rn.36357.1 /TIER=ConsEnd /STK=0 /UG=Rn.36357 /UG_TITLE=ESTs BG375198 RAS-like family 11 member B Rasl11b 305302 NM_001002830 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1383323_at AW435234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435234 /DB_XREF=gi:6966541 /DB_XREF=UI-R-BJ0p-agb-b-02-0-UI.s1 /CLONE=UI-R-BJ0p-agb-b-02-0-UI /FEA=EST /CNT=7 /TID=Rn.28929.1 /TIER=ConsEnd /STK=0 /UG=Rn.28929 /UG_TITLE=ESTs AW435234 DSN1, MIND kinetochore complex component, homolog (S. cerevisiae) Dsn1 499933 NM_001025768 0000444 // MIS12/MIND type complex // inferred from electronic annotation /// 0000444 // MIS12/MIND type complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383324_at AI703599 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI703599 /DB_XREF=gi:4991499 /DB_XREF=UI-R-AB1-yr-d-07-0-UI.s1 /CLONE=UI-R-AB1-yr-d-07-0-UI /FEA=EST /CNT=7 /TID=Rn.41550.1 /TIER=ConsEnd /STK=0 /UG=Rn.41550 /UG_TITLE=ESTs, Weakly similar to CSKP RAT PERIPHERAL PLASMA MEMBRANE PROTEIN CASK (R.norvegicus) AI703599 membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) Mpp6 362359 NM_001134982 0005886 // plasma membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030165 // PDZ domain binding // inferred from physical interaction 1383325_at AI712781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712781 /DB_XREF=gi:5016581 /DB_XREF=UI-R-AF1-aax-d-11-0-UI.s1 /CLONE=UI-R-AF1-aax-d-11-0-UI /FEA=EST /CNT=7 /TID=Rn.23454.1 /TIER=ConsEnd /STK=0 /UG=Rn.23454 /UG_TITLE=ESTs AI712781 hypothetical protein LOC690806 LOC690806 690806 NM_001135576 1383326_a_at AI576297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576297 /DB_XREF=gi:4560673 /DB_XREF=UI-R-Y0-vb-e-09-0-UI.s1 /CLONE=UI-R-Y0-vb-e-09-0-UI /FEA=EST /CNT=1 /TID=Rn.39116.2 /TIER=ConsEnd /STK=1 /UG=Rn.39116 /UG_TITLE=ESTs, Highly similar to JC4523 apoptosis protein MA-3 - mouse (M.musculus) AI576297 programmed cell death 4 Pdcd4 64031 NM_022265 0006915 // apoptosis // inferred from electronic annotation /// 0007569 // cell aging // not recorded /// 0007569 // cell aging // inferred from sequence or structural similarity /// 0007569 // cell aging // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0043508 // negative regulation of JUN kinase activity // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383327_at AI576297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576297 /DB_XREF=gi:4560673 /DB_XREF=UI-R-Y0-vb-e-09-0-UI.s1 /CLONE=UI-R-Y0-vb-e-09-0-UI /FEA=EST /CNT=1 /TID=Rn.39116.2 /TIER=ConsEnd /STK=1 /UG=Rn.39116 /UG_TITLE=ESTs, Highly similar to JC4523 apoptosis protein MA-3 - mouse (M.musculus) AI576297 programmed cell death 4 Pdcd4 64031 NM_022265 0006915 // apoptosis // inferred from electronic annotation /// 0007569 // cell aging // not recorded /// 0007569 // cell aging // inferred from sequence or structural similarity /// 0007569 // cell aging // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0043508 // negative regulation of JUN kinase activity // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383328_x_at AI576297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576297 /DB_XREF=gi:4560673 /DB_XREF=UI-R-Y0-vb-e-09-0-UI.s1 /CLONE=UI-R-Y0-vb-e-09-0-UI /FEA=EST /CNT=1 /TID=Rn.39116.2 /TIER=ConsEnd /STK=1 /UG=Rn.39116 /UG_TITLE=ESTs, Highly similar to JC4523 apoptosis protein MA-3 - mouse (M.musculus) AI576297 programmed cell death 4 Pdcd4 64031 NM_022265 0006915 // apoptosis // inferred from electronic annotation /// 0007569 // cell aging // not recorded /// 0007569 // cell aging // inferred from sequence or structural similarity /// 0007569 // cell aging // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0043508 // negative regulation of JUN kinase activity // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383329_at BI303892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303892 /DB_XREF=gi:14980172 /DB_XREF=UI-R-DR0-cjb-f-12-0-UI.s1 /CLONE=UI-R-DR0-cjb-f-12-0-UI /FEA=EST /CNT=6 /TID=Rn.39116.1 /TIER=ConsEnd /STK=0 /UG=Rn.39116 /UG_TITLE=ESTs, Highly similar to JC4523 apoptosis protein MA-3 - mouse (M.musculus) BI303892 programmed cell death 4 Pdcd4 64031 NM_022265 0006915 // apoptosis // inferred from electronic annotation /// 0007569 // cell aging // not recorded /// 0007569 // cell aging // inferred from sequence or structural similarity /// 0007569 // cell aging // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0043508 // negative regulation of JUN kinase activity // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383330_at AW915049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915049 /DB_XREF=gi:8080734 /DB_XREF=EST346353 /CLONE=RGIBN85 /FEA=EST /CNT=6 /TID=Rn.17768.1 /TIER=ConsEnd /STK=0 /UG=Rn.17768 /UG_TITLE=ESTs AW915049 1383331_at BF548234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548234 /DB_XREF=gi:11639341 /DB_XREF=UI-R-A0-aa-d-06-0-UI.r1 /CLONE=UI-R-A0-aa-d-06-0-UI /FEA=EST /CNT=6 /TID=Rn.8380.1 /TIER=ConsEnd /STK=0 /UG=Rn.8380 /UG_TITLE=ESTs BF548234 1383332_at BI281615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281615 /DB_XREF=gi:14931523 /DB_XREF=UI-R-CT0s-cau-d-11-0-UI.s1 /CLONE=UI-R-CT0s-cau-d-11-0-UI /FEA=EST /CNT=6 /TID=Rn.50802.1 /TIER=ConsEnd /STK=0 /UG=Rn.50802 /UG_TITLE=ESTs BI281615 1383333_at BI281419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281419 /DB_XREF=gi:14931123 /DB_XREF=UI-R-DC0-bzj-g-12-0-UI.s1 /CLONE=UI-R-DC0-bzj-g-12-0-UI /FEA=EST /CNT=6 /TID=Rn.19290.1 /TIER=ConsEnd /STK=0 /UG=Rn.19290 /UG_TITLE=ESTs, Weakly similar to T08793 hypothetical protein DKFZp586F0422.1 (H.sapiens) BI281419 C2 calcium-dependent domain containing 2 C2cd2 304055 NM_199391 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 1383334_at AW921244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921244 /DB_XREF=gi:8087067 /DB_XREF=EST352548 /CLONE=RGIHQ07 /FEA=EST /CNT=6 /TID=Rn.23421.1 /TIER=ConsEnd /STK=0 /UG=Rn.23421 /UG_TITLE=ESTs AW921244 1383335_at AI137215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137215 /DB_XREF=gi:3637992 /DB_XREF=UI-R-C2p-oj-e-07-0-UI.s1 /CLONE=UI-R-C2p-oj-e-07-0-UI /FEA=EST /CNT=6 /TID=Rn.23755.1 /TIER=ConsEnd /STK=0 /UG=Rn.23755 /UG_TITLE=ESTs, Weakly similar to GUANINE NUCLEOTIDE RELEASING PROTEIN (R.norvegicus) AI137215 Rap guanine nucleotide exchange factor (GEF)-like 1 Rapgefl1 303515 XM_001081409 /// XM_239336 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1383336_at BF549763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549763 /DB_XREF=gi:11659493 /DB_XREF=UI-R-A0-ay-g-11-0-UI.r1 /CLONE=UI-R-A0-ay-g-11-0-UI /FEA=EST /CNT=6 /TID=Rn.38987.1 /TIER=ConsEnd /STK=0 /UG=Rn.38987 /UG_TITLE=ESTs BF549763 pinin, desmosome associated protein Pnn 368070 NM_001109023 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0016607 // nuclear speck // not recorded 0005515 // protein binding // not recorded 1383337_at AA963875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963875 /DB_XREF=gi:4278817 /DB_XREF=UI-R-E1-gk-c-05-0-UI.s1 /CLONE=UI-R-E1-gk-c-05-0-UI /FEA=EST /CNT=6 /TID=Rn.11653.1 /TIER=ConsEnd /STK=0 /UG=Rn.11653 /UG_TITLE=ESTs AA963875 1383338_at AA875190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875190 /DB_XREF=gi:4231069 /DB_XREF=UI-R-E0-cu-a-08-0-UI.s1 /CLONE=UI-R-E0-cu-a-08-0-UI /FEA=EST /CNT=6 /TID=Rn.2822.1 /TIER=ConsEnd /STK=0 /UG=Rn.2822 /UG_TITLE=ESTs AA875190 1383339_at BF567255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567255 /DB_XREF=gi:11676985 /DB_XREF=UI-R-BO0-ahu-a-04-0-UI.r1 /CLONE=UI-R-BO0-ahu-a-04-0-UI /FEA=EST /CNT=6 /TID=Rn.24789.2 /TIER=ConsEnd /STK=0 /UG=Rn.24789 /UG_TITLE=ESTs BF567255 similar to NNX3 RGD1310358 308537 NM_001107507 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006457 // protein folding // inferred from electronic annotation /// 0009615 // response to virus // not recorded 0005665 // DNA-directed RNA polymerase II, core complex // not recorded /// 0016272 // prefoldin complex // inferred from electronic annotation 0003714 // transcription corepressor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1383340_at BG671011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671011 /DB_XREF=gi:13893110 /DB_XREF=DRNBKD07 /CLONE=DRNBKD07 /FEA=EST /CNT=6 /TID=Rn.49595.1 /TIER=ConsEnd /STK=0 /UG=Rn.49595 /UG_TITLE=ESTs BG671011 ataxia, cerebellar, Cayman type Atcay 362826 NM_001040190 0005515 // protein binding // not recorded 1383341_at BG662592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG662592 /DB_XREF=gi:13884514 /DB_XREF=DRAAJB12 /CLONE=DRAAJB12 /FEA=EST /CNT=6 /TID=Rn.51662.1 /TIER=ConsEnd /STK=0 /UG=Rn.51662 /UG_TITLE=ESTs, Moderately similar to MO25 MOUSE MO25 PROTEIN (M.musculus) BG662592 calcium binding protein 39-like Cab39l 290291 NM_001011917 0046320 // regulation of fatty acid oxidation // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383342_at BE098779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098779 /DB_XREF=gi:8490648 /DB_XREF=UI-R-BJ1-atd-g-07-0-UI.s1 /CLONE=UI-R-BJ1-atd-g-07-0-UI /FEA=EST /CNT=6 /TID=Rn.21625.1 /TIER=ConsEnd /STK=0 /UG=Rn.21625 /UG_TITLE=ESTs, Highly similar to Y014_HUMAN HYPOTHETICAL PROTEIN KIAA0014 (H.sapiens) BE098779 leucine rich repeat containing 14 Lrrc14 500900 NM_001024354 1383343_at BI300511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300511 /DB_XREF=gi:14976791 /DB_XREF=UI-R-CV2-cif-g-10-0-UI.s1 /CLONE=UI-R-CV2-cif-g-10-0-UI /FEA=EST /CNT=6 /TID=Rn.40882.1 /TIER=ConsEnd /STK=0 /UG=Rn.40882 /UG_TITLE=ESTs BI300511 zinc finger protein 758 Zfp758 690559 XM_001074805 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1383344_at AA875080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875080 /DB_XREF=gi:4230961 /DB_XREF=UI-R-E0-cf-f-01-0-UI.s1 /CLONE=UI-R-E0-cf-f-01-0-UI /FEA=EST /CNT=6 /TID=Rn.3234.1 /TIER=ConsEnd /STK=0 /UG=Rn.3234 /UG_TITLE=ESTs, Weakly similar to ZN91_HUMAN ZINC FINGER PROTEIN 91 (H.sapiens) AA875080 1383345_at AI144771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144771 /DB_XREF=gi:3666570 /DB_XREF=UI-R-BT0-pr-d-01-0-UI.s1 /CLONE=UI-R-BT0-pr-d-01-0-UI /FEA=EST /CNT=6 /TID=Rn.21415.1 /TIER=ConsEnd /STK=0 /UG=Rn.21415 /UG_TITLE=ESTs AI144771 1383346_at BF387821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387821 /DB_XREF=gi:11372610 /DB_XREF=UI-R-CA1-bbu-f-12-0-UI.s1 /CLONE=UI-R-CA1-bbu-f-12-0-UI /FEA=EST /CNT=6 /TID=Rn.64426.1 /TIER=ConsEnd /STK=0 /UG=Rn.64426 /UG_TITLE=ESTs, Weakly similar to XPF_HUMAN DNA-REPAIR PROTEIN COMPLEMENTING XP-F CELL (H.sapiens) BF387821 excision repair cross-complementing rodent repair deficiency, complementation group 4 Ercc4 304719 XM_222534 0000718 // nucleotide-excision repair, DNA damage removal // not recorded /// 0000723 // telomere maintenance // not recorded /// 0000724 // double-strand break repair via homologous recombination // not recorded /// 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006281 // DNA repair // not recorded /// 0006289 // nucleotide-excision repair // not recorded /// 0006295 // nucleotide-excision repair, DNA incision, 3'-to lesion // not recorded /// 0006296 // nucleotide-excision repair, DNA incision, 5'-to lesion // not recorded /// 0009411 // response to UV // not recorded /// 0009650 // UV protection // not recorded /// 0010834 // telomere maintenance via telomere shortening // not recorded /// 0032205 // negative regulation of telomere maintenance // not recorded /// 0033683 // nucleotide-excision repair, DNA incision // not recorded 0000109 // nucleotide-excision repair complex // not recorded /// 0000781 // chromosome, telomeric region // not recorded /// 0000784 // nuclear chromosome, telomeric region // not recorded /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // not recorded /// 0003697 // single-stranded DNA binding // not recorded /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004520 // endodeoxyribonuclease activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0043566 // structure-specific DNA binding // not recorded /// 0047485 // protein N-terminus binding // not recorded 1383347_at BM384011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384011 /DB_XREF=gi:18184064 /DB_XREF=UI-R-DM1-ckb-e-16-0-UI.s1 /CLONE=UI-R-DM1-ckb-e-16-0-UI /FEA=EST /CNT=6 /TID=Rn.14414.1 /TIER=ConsEnd /STK=0 /UG=Rn.14414 /UG_TITLE=ESTs BM384011 REV1 homolog (S. cerevisiae) Rev1 316344 NM_001108213 0006281 // DNA repair // inferred from electronic annotation /// 0009411 // response to UV // not recorded /// 0042276 // error-prone translesion synthesis // not recorded 0005622 // intracellular // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0017125 // deoxycytidyl transferase activity // not recorded 1383348_at BF545309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545309 /DB_XREF=gi:11636416 /DB_XREF=UI-R-C0-jr-g-12-0-UI.r1 /CLONE=UI-R-C0-jr-g-12-0-UI /FEA=EST /CNT=6 /TID=Rn.18381.1 /TIER=ConsEnd /STK=0 /UG=Rn.18381 /UG_TITLE=ESTs BF545309 1383349_at BE115594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115594 /DB_XREF=gi:8507699 /DB_XREF=UI-R-BJ1-avw-g-01-0-UI.s1 /CLONE=UI-R-BJ1-avw-g-01-0-UI /FEA=EST /CNT=6 /TID=Rn.19941.1 /TIER=ConsEnd /STK=0 /UG=Rn.19941 /UG_TITLE=ESTs BE115594 regulatory factor X, 5 (influences HLA class II expression) Rfx5 310659 NM_001107694 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383350_at AA963524 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963524 /DB_XREF=gi:4278427 /DB_XREF=UI-R-E1-gn-a-10-0-UI.s1 /CLONE=UI-R-E1-gn-a-10-0-UI /FEA=EST /CNT=6 /TID=Rn.12123.1 /TIER=ConsEnd /STK=0 /UG=Rn.12123 /UG_TITLE=ESTs AA963524 solute carrier family 35, member C2 Slc35c2 311637 NM_001107803 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1383351_at AI136019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136019 /DB_XREF=gi:3636796 /DB_XREF=UI-R-C2p-nx-b-07-0-UI.s1 /CLONE=UI-R-C2p-nx-b-07-0-UI /FEA=EST /CNT=6 /TID=Rn.23654.1 /TIER=ConsEnd /STK=0 /UG=Rn.23654 /UG_TITLE=ESTs AI136019 1383352_at AI029580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029580 /DB_XREF=gi:4299537 /DB_XREF=UI-R-C0-ix-f-11-0-UI.s1 /CLONE=UI-R-C0-ix-f-11-0-UI /FEA=EST /CNT=6 /TID=Rn.18262.1 /TIER=ConsEnd /STK=0 /UG=Rn.18262 /UG_TITLE=ESTs AI029580 1383353_at BF389666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389666 /DB_XREF=gi:11374501 /DB_XREF=UI-R-BS2-bdn-c-11-0-UI.s1 /CLONE=UI-R-BS2-bdn-c-11-0-UI /FEA=EST /CNT=6 /TID=Rn.23346.2 /TIER=ConsEnd /STK=0 /UG=Rn.23346 /UG_TITLE=ESTs BF389666 1383354_a_at BF566664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF566664 /DB_XREF=gi:11676394 /DB_XREF=UI-R-BJ0p-aex-h-05-0-UI.r1 /CLONE=UI-R-BJ0p-aex-h-05-0-UI /FEA=EST /CNT=6 /TID=Rn.22585.2 /TIER=ConsEnd /STK=0 /UG=Rn.22585 /UG_TITLE=ESTs BF566664 F-box protein 33 Fbxo33 314157 NM_001108023 1383355_at AW918387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918387 /DB_XREF=gi:8084163 /DB_XREF=EST349691 /CLONE=RGIER58 /FEA=EST /CNT=6 /TID=Rn.6579.1 /TIER=ConsEnd /STK=0 /UG=Rn.6579 /UG_TITLE=ESTs, Highly similar to ABC1_MOUSE ATP-binding cassette, sub-family A, member 1 (ATP-binding cassette transporter 1) (ATP-binding cassette 1) (ABC-1) (M.musculus) AW918387 ATP-binding cassette, sub-family A (ABC1), member 1 Abca1 313210 NM_178095 0002790 // peptide secretion // not recorded /// 0002790 // peptide secretion // inferred from electronic annotation /// 0006497 // protein lipidation // not recorded /// 0006497 // protein lipidation // inferred from electronic annotation /// 0006820 // anion transport // not recorded /// 0006911 // phagocytosis, engulfment // not recorded /// 0006911 // phagocytosis, engulfment // inferred from electronic annotation /// 0007040 // lysosome organization // not recorded /// 0007040 // lysosome organization // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from expression pattern /// 0008203 // cholesterol metabolic process // not recorded /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0010875 // positive regulation of cholesterol efflux // not recorded /// 0010875 // positive regulation of cholesterol efflux // inferred from electronic annotation /// 0015914 // phospholipid transport // inferred from direct assay /// 0015914 // phospholipid transport // traceable author statement /// 0016197 // endosome transport // not recorded /// 0016197 // endosome transport // inferred from electronic annotation /// 0030301 // cholesterol transport // inferred from direct assay /// 0030301 // cholesterol transport // inferred from mutant phenotype /// 0030819 // positive regulation of cAMP biosynthetic process // not recorded /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0032367 // intracellular cholesterol transport // not recorded /// 0032367 // intracellular cholesterol transport // inferred from electronic annotation /// 0032488 // Cdc42 protein signal transduction // not recorded /// 0032488 // Cdc42 protein signal transduction // inferred from electronic annotation /// 0033344 // cholesterol efflux // not recorded /// 0033344 // cholesterol efflux // inferred from electronic annotation /// 0033700 // phospholipid efflux // not recorded /// 0033700 // phospholipid efflux // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0034380 // high-density lipoprotein particle assembly // not recorded /// 0034380 // high-density lipoprotein particle assembly // inferred from electronic annotation /// 0042157 // lipoprotein metabolic process // not recorded /// 0042157 // lipoprotein metabolic process // inferred from electronic annotation /// 0042158 // lipoprotein biosynthetic process // inferred from mutant phenotype /// 0042158 // lipoprotein biosynthetic process // not recorded /// 0042158 // lipoprotein biosynthetic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042632 // cholesterol homeostasis // not recorded /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0043691 // reverse cholesterol transport // not recorded /// 0043691 // reverse cholesterol transport // inferred from electronic annotation /// 0045332 // phospholipid translocation // not recorded /// 0045332 // phospholipid translocation // inferred from electronic annotation /// 0050702 // interleukin-1 beta secretion // not recorded /// 0050702 // interleukin-1 beta secretion // inferred from electronic annotation /// 0055091 // phospholipid homeostasis // not recorded /// 0055091 // phospholipid homeostasis // inferred from electronic annotation /// 0055099 // response to high density lipoprotein stimulus // not recorded /// 0060155 // platelet dense granule organization // not recorded /// 0060155 // platelet dense granule organization // inferred from electronic annotation /// 0071222 // cellular response to lipopolysaccharide // not recorded /// 0071300 // cellular response to retinoic acid // not recorded 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0030139 // endocytic vesicle // not recorded /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0034364 // high-density lipoprotein particle // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from electronic annotation /// 0045335 // phagocytic vesicle // not recorded /// 0045335 // phagocytic vesicle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005548 // phospholipid transporter activity // not recorded /// 0005548 // phospholipid transporter activity // inferred from electronic annotation /// 0008035 // high-density lipoprotein binding // inferred from direct assay /// 0008509 // anion transmembrane transporter activity // not recorded /// 0008509 // anion transmembrane transporter activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0017127 // cholesterol transporter activity // not recorded /// 0017127 // cholesterol transporter activity // inferred from electronic annotation /// 0030349 // syntaxin-13 binding // not recorded /// 0030349 // syntaxin-13 binding // inferred from electronic annotation /// 0031267 // small GTPase binding // not recorded /// 0031267 // small GTPase binding // inferred from electronic annotation /// 0034185 // apolipoprotein binding // not recorded /// 0034185 // apolipoprotein binding // inferred from electronic annotation /// 0034186 // apolipoprotein A-I binding // not recorded /// 0034186 // apolipoprotein A-I binding // inferred from electronic annotation /// 0034188 // apolipoprotein A-I receptor activity // not recorded /// 0034188 // apolipoprotein A-I receptor activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from direct assay /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // traceable author statement /// 0070653 // high-density lipoprotein receptor binding // inferred from direct assay 1383356_at H32660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H32660 /DB_XREF=gi:978077 /DB_XREF=EST107963 /CLONE=RPCCF48 /FEA=EST /CNT=6 /TID=Rn.14987.2 /TIER=ConsEnd /STK=0 /UG=Rn.14987 /UG_TITLE=ESTs, Moderately similar to DYI3_HUMAN DYNEIN INTERMEDIATE CHAIN 1, AXONEMAL (AXONEMAL DYNEIN INTERMEDIATE CHAIN 1) (H.sapiens) H32660 1383357_a_at BF403558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403558 /DB_XREF=gi:11391533 /DB_XREF=UI-R-CA1-biz-c-15-0-UI.s1 /CLONE=UI-R-CA1-biz-c-15-0-UI /FEA=EST /CNT=6 /TID=Rn.22641.1 /TIER=ConsEnd /STK=0 /UG=Rn.22641 /UG_TITLE=ESTs BF403558 1383358_at AI072577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072577 /DB_XREF=gi:3398771 /DB_XREF=UI-R-C2-nn-a-11-0-UI.s1 /CLONE=UI-R-C2-nn-a-11-0-UI /FEA=EST /CNT=6 /TID=Rn.20186.1 /TIER=ConsEnd /STK=0 /UG=Rn.20186 /UG_TITLE=ESTs AI072577 A kinase (PRKA) anchor protein 1 Akap1 114124 NM_053665 0010614 // negative regulation of cardiac muscle hypertrophy // inferred from mutant phenotype /// 0010738 // regulation of protein kinase A signaling cascade // inferred by curator /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0035308 // negative regulation of protein dephosphorylation // inferred from mutant phenotype /// 0051534 // negative regulation of NFAT protein import into nucleus // inferred from mutant phenotype /// 0070887 // cellular response to chemical stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005811 // lipid particle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030061 // mitochondrial crista // inferred from direct assay /// 0031594 // neuromuscular junction // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from direct assay /// 0019903 // protein phosphatase binding // inferred from direct assay /// 0019904 // protein domain specific binding // inferred from mutant phenotype /// 0030346 // protein phosphatase 2B binding // inferred from direct assay /// 0032947 // protein complex scaffold // inferred from direct assay /// 0034237 // protein kinase A regulatory subunit binding // inferred from direct assay /// 0048487 // beta-tubulin binding // inferred from direct assay 1383359_at BI389176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI389176 /DB_XREF=gi:15080660 /DB_XREF=DHK5 /CLONE=DHK5 /FEA=EST /CNT=6 /TID=Rn.19994.1 /TIER=ConsEnd /STK=0 /UG=Rn.19994 /UG_TITLE=ESTs BI389176 ligand of numb-protein X 2 Lnx2 360761 NM_001108329 0051260 // protein homooligomerization // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1383360_at AI145787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145787 /DB_XREF=gi:3667586 /DB_XREF=UI-R-BT0-qi-b-08-0-UI.s1 /CLONE=UI-R-BT0-qi-b-08-0-UI /FEA=EST /CNT=6 /TID=Rn.17928.1 /TIER=ConsEnd /STK=0 /UG=Rn.17928 /UG_TITLE=ESTs AI145787 C2 calcium-dependent domain containing 2 C2cd2 304055 NM_199391 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 1383361_at BM383741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383741 /DB_XREF=gi:18183794 /DB_XREF=UI-R-DM1-ckb-o-03-0-UI.s1 /CLONE=UI-R-DM1-ckb-o-03-0-UI /FEA=EST /CNT=6 /TID=Rn.3749.2 /TIER=ConsEnd /STK=0 /UG=Rn.3749 /UG_TITLE=ESTs BM383741 1383362_at BI275850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275850 /DB_XREF=gi:14920183 /DB_XREF=UI-R-CX0-bxh-c-09-0-UI.s1 /CLONE=UI-R-CX0-bxh-c-09-0-UI /FEA=EST /CNT=6 /TID=Rn.30219.1 /TIER=ConsEnd /STK=0 /UG=Rn.30219 /UG_TITLE=ESTs BI275850 1383363_at BF418817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418817 /DB_XREF=gi:11406806 /DB_XREF=UI-R-BJ2-bqj-c-11-0-UI.s1 /CLONE=UI-R-BJ2-bqj-c-11-0-UI /FEA=EST /CNT=6 /TID=Rn.11709.1 /TIER=ConsEnd /STK=0 /UG=Rn.11709 /UG_TITLE=ESTs BF418817 1383364_at BG672604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672604 /DB_XREF=gi:13894703 /DB_XREF=DRNCNB05 /CLONE=DRNCNB05 /FEA=EST /CNT=6 /TID=Rn.14180.2 /TIER=ConsEnd /STK=0 /UG=Rn.14180 /UG_TITLE=ESTs, Moderately similar to suppressor of G2 allele of skp1 homolog (H.sapiens) BG672604 LRRGT00053-like LOC100360244 100360244 NM_001177863 /// XM_002725126 /// XM_002728298 1383365_at AI715235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715235 /DB_XREF=gi:5032488 /DB_XREF=UI-R-Y0-abn-h-09-0-UI.s1 /CLONE=UI-R-Y0-abn-h-09-0-UI /FEA=EST /CNT=6 /TID=Rn.40392.1 /TIER=ConsEnd /STK=0 /UG=Rn.40392 /UG_TITLE=ESTs AI715235 collagen, type XVII, alpha 1 Col17a1 294027 NM_001106366 0031581 // hemidesmosome assembly // not recorded 0005886 // plasma membrane // not recorded /// 0030056 // hemidesmosome // not recorded 1383366_at BE107954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107954 /DB_XREF=gi:8500059 /DB_XREF=UI-R-CA0-awy-f-11-0-UI.s1 /CLONE=UI-R-CA0-awy-f-11-0-UI /FEA=EST /CNT=6 /TID=Rn.51353.1 /TIER=ConsEnd /STK=0 /UG=Rn.51353 /UG_TITLE=ESTs BE107954 1383367_at AI136153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136153 /DB_XREF=gi:3636930 /DB_XREF=UI-R-C2p-ny-g-02-0-UI.s1 /CLONE=UI-R-C2p-ny-g-02-0-UI /FEA=EST /CNT=6 /TID=Rn.23661.1 /TIER=ConsEnd /STK=0 /UG=Rn.23661 /UG_TITLE=ESTs AI136153 sterile alpha motif domain containing 14 Samd14 287637 NM_001024966 0008202 // steroid metabolic process // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1383368_at BF550060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550060 /DB_XREF=gi:11659790 /DB_XREF=UI-R-E0-bp-a-01-0-UI.r1 /CLONE=UI-R-E0-bp-a-01-0-UI /FEA=EST /CNT=6 /TID=Rn.12250.1 /TIER=ConsEnd /STK=0 /UG=Rn.12250 /UG_TITLE=ESTs BF550060 torsin A interacting protein 2 Tor1aip2 304881 NM_001165896 /// NM_001165897 /// NM_199100 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383369_at AI028875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI028875 /DB_XREF=gi:4294662 /DB_XREF=UI-R-C0-ik-c-10-0-UI.s1 /CLONE=UI-R-C0-ik-c-10-0-UI /FEA=EST /CNT=6 /TID=Rn.18089.1 /TIER=ConsEnd /STK=0 /UG=Rn.18089 /UG_TITLE=ESTs AI028875 tripartite motif-containing 26 Trim26 309586 NM_001011665 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383370_at BF393519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393519 /DB_XREF=gi:11378380 /DB_XREF=UI-R-CA0-bfu-h-06-0-UI.s1 /CLONE=UI-R-CA0-bfu-h-06-0-UI /FEA=EST /CNT=6 /TID=Rn.22596.1 /TIER=ConsEnd /STK=0 /UG=Rn.22596 /UG_TITLE=ESTs BF393519 family with sequence similarity 5, member B Fam5b 286895 NM_173115 0007399 // nervous system development // inferred from expression pattern /// 0045786 // negative regulation of cell cycle // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from mutant phenotype 1383371_at AI712305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712305 /DB_XREF=gi:5016105 /DB_XREF=UI-R-AF1-aav-a-08-0-UI.s1 /CLONE=UI-R-AF1-aav-a-08-0-UI /FEA=EST /CNT=6 /TID=Rn.35187.1 /TIER=ConsEnd /STK=0 /UG=Rn.35187 /UG_TITLE=ESTs AI712305 scavenger receptor cysteine rich domain containing, group B (4 domains) Srcrb4d 304401 XM_001077242 /// XM_002724812 /// XM_002727956 /// XM_222076 0016020 // membrane // inferred from electronic annotation 0005044 // scavenger receptor activity // inferred from electronic annotation 1383372_at BF407234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407234 /DB_XREF=gi:11395209 /DB_XREF=UI-R-BJ2-bqc-c-04-0-UI.s1 /CLONE=UI-R-BJ2-bqc-c-04-0-UI /FEA=EST /CNT=6 /TID=Rn.15359.1 /TIER=ConsEnd /STK=0 /UG=Rn.15359 /UG_TITLE=ESTs BF407234 platelet-activating factor receptor Ptafr 58949 NM_053321 0001816 // cytokine production // inferred from electronic annotation /// 0001816 // cytokine production // not recorded /// 0002221 // pattern recognition receptor signaling pathway // not recorded /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0031663 // lipopolysaccharide-mediated signaling pathway // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0032959 // inositol trisphosphate biosynthetic process // inferred from electronic annotation /// 0032959 // inositol trisphosphate biosynthetic process // not recorded /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001530 // lipopolysaccharide binding // not recorded /// 0001530 // lipopolysaccharide binding // inferred from electronic annotation /// 0001875 // lipopolysaccharide receptor activity // inferred from electronic annotation /// 0001875 // lipopolysaccharide receptor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004992 // platelet activating factor receptor activity // inferred from electronic annotation /// 0004992 // platelet activating factor receptor activity // not recorded /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005543 // phospholipid binding // not recorded 1383373_at AI576635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576635 /DB_XREF=gi:4561011 /DB_XREF=UI-R-Y0-vd-g-09-0-UI.s1 /CLONE=UI-R-Y0-vd-g-09-0-UI /FEA=EST /CNT=6 /TID=Rn.11733.1 /TIER=ConsEnd /STK=0 /UG=Rn.11733 /UG_TITLE=ESTs AI576635 1383374_at BE111170 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111170 /DB_XREF=gi:8503275 /DB_XREF=UI-R-BJ1-auv-d-09-0-UI.s1 /CLONE=UI-R-BJ1-auv-d-09-0-UI /FEA=EST /CNT=6 /TID=Rn.11720.2 /TIER=ConsEnd /STK=0 /UG=Rn.11720 /UG_TITLE=ESTs BE111170 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) Galnt1 79214 NM_024373 0006493 // protein O-linked glycosylation // not recorded /// 0006493 // protein O-linked glycosylation // traceable author statement /// 0006493 // protein O-linked glycosylation // inferred from electronic annotation /// 0018242 // protein O-linked glycosylation via serine // inferred from electronic annotation /// 0018242 // protein O-linked glycosylation via serine // not recorded /// 0018243 // protein O-linked glycosylation via threonine // inferred from electronic annotation /// 0018243 // protein O-linked glycosylation via threonine // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from mutant phenotype /// 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // not recorded /// 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0030145 // manganese ion binding // not recorded 1383375_at BI293584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293584 /DB_XREF=gi:14955216 /DB_XREF=UI-R-DK0-cds-c-04-0-UI.s1 /CLONE=UI-R-DK0-cds-c-04-0-UI /FEA=EST /CNT=6 /TID=Rn.16907.1 /TIER=ConsEnd /STK=0 /UG=Rn.16907 /UG_TITLE=ESTs BI293584 transmembrane protein 55A Tmem55a 362490 NM_001024900 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation 1383376_at AI717529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717529 /DB_XREF=gi:5034785 /DB_XREF=UI-R-Y0-acp-c-04-0-UI.s1 /CLONE=UI-R-Y0-acp-c-04-0-UI /FEA=EST /CNT=6 /TID=Rn.29127.1 /TIER=ConsEnd /STK=0 /UG=Rn.29127 /UG_TITLE=ESTs AI717529 DnaJ (Hsp40) homolog, subfamily C, member 30 Dnajc30 368190 NM_001109024 0006457 // protein folding // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1383377_at BG372192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372192 /DB_XREF=gi:13268694 /DB_XREF=UI-R-CV0-brn-b-06-0-UI.s1 /CLONE=UI-R-CV0-brn-b-06-0-UI /FEA=EST /CNT=6 /TID=Rn.45570.1 /TIER=ConsEnd /STK=0 /UG=Rn.45570 /UG_TITLE=ESTs BG372192 GA binding protein transcription factor, alpha subunit Gabpa 363735 NM_001108841 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1383378_at BI298932 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298932 /DB_XREF=gi:14975212 /DB_XREF=UI-R-CV2-chp-c-04-0-UI.s1 /CLONE=UI-R-CV2-chp-c-04-0-UI /FEA=EST /CNT=6 /TID=Rn.14926.1 /TIER=ConsEnd /STK=0 /UG=Rn.14926 /UG_TITLE=ESTs BI298932 1383379_at AI059153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059153 /DB_XREF=gi:3332930 /DB_XREF=UI-R-C1-kq-a-11-0-UI.s1 /CLONE=UI-R-C1-kq-a-11-0-UI /FEA=EST /CNT=6 /TID=Rn.19086.1 /TIER=ConsEnd /STK=0 /UG=Rn.19086 /UG_TITLE=ESTs AI059153 similar to KIAA0999 protein LOC684112 684112 XM_001068984 0006468 // protein phosphorylation // inferred from electronic annotation 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1383380_at AA859346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859346 /DB_XREF=gi:4229694 /DB_XREF=UI-R-E0-cl-b-09-0-UI.s1 /CLONE=UI-R-E0-cl-b-09-0-UI /FEA=EST /CNT=6 /TID=Rn.2690.1 /TIER=ConsEnd /STK=0 /UG=Rn.2690 /UG_TITLE=ESTs, Moderately similar to RP38_HUMAN Ribonuclease P protein subunit p38 (RNaseP protein p38) (H.sapiens) AA859346 ribonuclease P/MRP 38 subunit (human) Rpp38 291317 NM_001033063 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383381_at AI030756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030756 /DB_XREF=gi:3248582 /DB_XREF=UI-R-C0-jd-h-01-0-UI.s1 /CLONE=UI-R-C0-jd-h-01-0-UI /FEA=EST /CNT=6 /TID=Rn.23837.1 /TIER=ConsEnd /STK=0 /UG=Rn.23837 /UG_TITLE=ESTs AI030756 RGD1560394 RGD1560394 289728 NM_001106014 1383382_at BI294931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294931 /DB_XREF=gi:14957868 /DB_XREF=UI-R-DK0-ced-g-08-0-UI.s1 /CLONE=UI-R-DK0-ced-g-08-0-UI /FEA=EST /CNT=6 /TID=Rn.18795.1 /TIER=ConsEnd /STK=0 /UG=Rn.18795 /UG_TITLE=ESTs BI294931 similar to jumonji protein LOC681740 681740 XM_001056897 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1383383_at BE115992 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115992 /DB_XREF=gi:8508097 /DB_XREF=UI-R-BS1-axy-c-05-0-UI.s1 /CLONE=UI-R-BS1-axy-c-05-0-UI /FEA=EST /CNT=6 /TID=Rn.24537.1 /TIER=ConsEnd /STK=0 /UG=Rn.24537 /UG_TITLE=ESTs BE115992 1383384_at BG381725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381725 /DB_XREF=gi:13306197 /DB_XREF=UI-R-CT0-bue-g-01-0-UI.s1 /CLONE=UI-R-CT0-bue-g-01-0-UI /FEA=EST /CNT=6 /TID=Rn.13603.1 /TIER=ConsEnd /STK=0 /UG=Rn.13603 /UG_TITLE=ESTs BG381725 similar to mediator of RNA polymerase II transcription, subunit 18 homolog LOC682988 682988 NM_001115037 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0016592 // mediator complex // inferred from electronic annotation 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation 1383385_at AI136674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136674 /DB_XREF=gi:3637451 /DB_XREF=UI-R-C2p-nq-c-08-0-UI.s1 /CLONE=UI-R-C2p-nq-c-08-0-UI /FEA=EST /CNT=6 /TID=Rn.22852.1 /TIER=ConsEnd /STK=0 /UG=Rn.22852 /UG_TITLE=ESTs AI136674 1383386_a_at AI177465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177465 /DB_XREF=gi:4134992 /DB_XREF=EST221095 /CLONE=RPLCA28 /FEA=EST /CNT=1 /TID=Rn.37844.2 /TIER=ConsEnd /STK=1 /UG=Rn.37844 /UG_TITLE=ESTs AI177465 SEC3-like 1 (S. cerevisiae) Sec3l1 305287 NM_001024770 1383387_at AI177465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177465 /DB_XREF=gi:4134992 /DB_XREF=EST221095 /CLONE=RPLCA28 /FEA=EST /CNT=1 /TID=Rn.37844.2 /TIER=ConsEnd /STK=1 /UG=Rn.37844 /UG_TITLE=ESTs AI177465 SEC3-like 1 (S. cerevisiae) Sec3l1 305287 NM_001024770 1383388_at BI303582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303582 /DB_XREF=gi:14979862 /DB_XREF=UI-R-DQ0-cja-p-03-0-UI.s1 /CLONE=UI-R-DQ0-cja-p-03-0-UI /FEA=EST /CNT=6 /TID=Rn.37844.1 /TIER=ConsEnd /STK=0 /UG=Rn.37844 /UG_TITLE=ESTs BI303582 SEC3-like 1 (S. cerevisiae) Sec3l1 305287 NM_001024770 1383389_at BM388790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388790 /DB_XREF=gi:18188843 /DB_XREF=UI-R-DZ0-ckn-i-23-0-UI.s1 /CLONE=UI-R-DZ0-ckn-i-23-0-UI /FEA=EST /CNT=6 /TID=Rn.23384.1 /TIER=ConsEnd /STK=0 /UG=Rn.23384 /UG_TITLE=ESTs BM388790 zer-1 homolog (C. elegans) Zer1 311842 NM_001100707 /// XM_001065175 /// XM_001077108 /// XM_001077126 /// XM_242300 0051438 // regulation of ubiquitin-protein ligase activity // inferred from electronic annotation /// 0051438 // regulation of ubiquitin-protein ligase activity // not recorded 0031462 // Cul2-RING ubiquitin ligase complex // inferred from electronic annotation /// 0031462 // Cul2-RING ubiquitin ligase complex // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383390_at AI111644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111644 /DB_XREF=gi:3511371 /DB_XREF=UI-R-Y0-ma-a-01-0-UI.s1 /CLONE=UI-R-Y0-ma-a-01-0-UI /FEA=EST /CNT=6 /TID=Rn.20259.1 /TIER=ConsEnd /STK=0 /UG=Rn.20259 /UG_TITLE=ESTs AI111644 family with sequence similarity 123A Fam123a 498529 XM_001063071 /// XM_002728287 /// XM_573799 0005515 // protein binding // not recorded 1383391_a_at AI716125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716125 /DB_XREF=gi:5033336 /DB_XREF=UI-R-Y0-acd-g-09-0-UI.s1 /CLONE=UI-R-Y0-acd-g-09-0-UI /FEA=EST /CNT=6 /TID=Rn.20031.1 /TIER=ConsEnd /STK=0 /UG=Rn.20031 /UG_TITLE=ESTs, Highly similar to COMPLEMENT C2 PRECURSOR (M.musculus) AI716125 complement component 2 C2 24231 NM_172222 0006508 // proteolysis // inferred from electronic annotation /// 0006956 // complement activation // inferred from electronic annotation /// 0006957 // complement activation, alternative pathway // not recorded /// 0007584 // response to nutrient // inferred from expression pattern 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1383392_at AI716125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716125 /DB_XREF=gi:5033336 /DB_XREF=UI-R-Y0-acd-g-09-0-UI.s1 /CLONE=UI-R-Y0-acd-g-09-0-UI /FEA=EST /CNT=6 /TID=Rn.20031.1 /TIER=ConsEnd /STK=0 /UG=Rn.20031 /UG_TITLE=ESTs, Highly similar to COMPLEMENT C2 PRECURSOR (M.musculus) AI716125 complement component 2 C2 24231 NM_172222 0006508 // proteolysis // inferred from electronic annotation /// 0006956 // complement activation // inferred from electronic annotation /// 0006957 // complement activation, alternative pathway // not recorded /// 0007584 // response to nutrient // inferred from expression pattern 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1383393_at AA858485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858485 /DB_XREF=gi:4229819 /DB_XREF=UI-R-E0-bo-b-05-0-UI.s1 /CLONE=UI-R-E0-bo-b-05-0-UI /FEA=EST /CNT=6 /TID=Rn.17019.2 /TIER=ConsEnd /STK=0 /UG=Rn.17019 /UG_TITLE=ESTs AA858485 1383394_at BG372099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372099 /DB_XREF=gi:13268636 /DB_XREF=UI-R-CV0-brm-d-01-0-UI.s1 /CLONE=UI-R-CV0-brm-d-01-0-UI /FEA=EST /CNT=6 /TID=Rn.26665.1 /TIER=ConsEnd /STK=0 /UG=Rn.26665 /UG_TITLE=ESTs, Moderately similar to TYR2 MOUSE DOPACHROME TAUTOMERASE PRECURSOR (M.musculus) BG372099 1383395_at AI028979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI028979 /DB_XREF=gi:4295385 /DB_XREF=UI-R-C0-io-a-05-0-UI.s1 /CLONE=UI-R-C0-io-a-05-0-UI /FEA=EST /CNT=6 /TID=Rn.7880.1 /TIER=ConsEnd /STK=0 /UG=Rn.7880 /UG_TITLE=ESTs, Weakly similar to ARG2 RAT ARGINASE II PRECURSOR (R.norvegicus) AI028979 agmatine ureohydrolase (agmatinase) Agmat 298607 NM_001048185 0006596 // polyamine biosynthetic process // inferred from electronic annotation /// 0008295 // spermidine biosynthetic process // inferred from electronic annotation /// 0009446 // putrescine biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation 0008783 // agmatinase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016813 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383396_at AA894079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894079 /DB_XREF=gi:3020958 /DB_XREF=EST197882 /CLONE=RSPAQ44 /FEA=EST /CNT=6 /TID=Rn.14851.1 /TIER=ConsEnd /STK=0 /UG=Rn.14851 /UG_TITLE=ESTs AA894079 fibronectin type III domain containing 3a Fndc3a 306022 NM_001107278 0007286 // spermatid development // not recorded /// 0009566 // fertilization // not recorded /// 0016337 // cell-cell adhesion // not recorded /// 0060009 // Sertoli cell development // not recorded 0001669 // acrosomal vesicle // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // not recorded /// 0012506 // vesicle membrane // not recorded /// 0031410 // cytoplasmic vesicle // not recorded /// 0042598 // vesicular fraction // not recorded 1383397_at BI296106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296106 /DB_XREF=gi:14960215 /DB_XREF=UI-R-DK0-cew-d-07-0-UI.s1 /CLONE=UI-R-DK0-cew-d-07-0-UI /FEA=EST /CNT=6 /TID=Rn.17149.1 /TIER=ConsEnd /STK=0 /UG=Rn.17149 /UG_TITLE=ESTs, Highly similar to A31995 nicotinic acetylcholine receptor-associated 46K protein - mouse (M.musculus) BI296106 receptor-associated protein of the synapse Rapsn 362161 NM_001108584 0007268 // synaptic transmission // inferred from electronic annotation /// 0007271 // synaptic transmission, cholinergic // not recorded 0005794 // Golgi apparatus // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0031594 // neuromuscular junction // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0033130 // acetylcholine receptor binding // inferred from electronic annotation /// 0033130 // acetylcholine receptor binding // not recorded /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1383398_at AI059150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059150 /DB_XREF=gi:3332927 /DB_XREF=UI-R-C1-kq-a-07-0-UI.s1 /CLONE=UI-R-C1-kq-a-07-0-UI /FEA=EST /CNT=6 /TID=Rn.19084.1 /TIER=ConsEnd /STK=0 /UG=Rn.19084 /UG_TITLE=ESTs AI059150 similar to integrin alpha 8 RGD1564327 364786 NM_001173972 /// XM_001072297 /// XM_344634 0001656 // metanephros development // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0007613 // memory // inferred from electronic annotation /// 0030030 // cell projection organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // inferred from electronic annotation 0008305 // integrin complex // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032591 // dendritic spine membrane // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0045177 // apical part of cell // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1383399_at AI574728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI574728 /DB_XREF=gi:4544724 /DB_XREF=UI-R-G0-uc-h-06-0-UI.s1 /CLONE=UI-R-G0-uc-h-06-0-UI /FEA=EST /CNT=6 /TID=Rn.65526.1 /TIER=ConsEnd /STK=0 /UG=Rn.65526 /UG_TITLE=ESTs, Highly similar to A43344 synaptic vesicle protein SV2 - rat (R.norvegicus) AI574728 synaptic vesicle glycoprotein 2a Sv2a 117559 NM_057210 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // traceable author statement /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0008021 // synaptic vesicle // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from direct assay /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0031594 // neuromuscular junction // not recorded /// 0045202 // synapse // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005215 // transporter activity // traceable author statement /// 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1383400_at BI293535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293535 /DB_XREF=gi:14955119 /DB_XREF=UI-R-DK0-cdr-e-12-0-UI.s1 /CLONE=UI-R-DK0-cdr-e-12-0-UI /FEA=EST /CNT=6 /TID=Rn.12115.1 /TIER=ConsEnd /STK=0 /UG=Rn.12115 /UG_TITLE=ESTs BI293535 similar to TBP-associated factor 4 LOC682097 682097 XR_085804 /// XR_086218 0006352 // transcription initiation // inferred from electronic annotation 0005669 // transcription factor TFIID complex // inferred from electronic annotation 0016986 // transcription initiation factor activity // inferred from electronic annotation 1383401_at BI288769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288769 /DB_XREF=gi:14945666 /DB_XREF=UI-R-DK0-cde-g-01-0-UI.s1 /CLONE=UI-R-DK0-cde-g-01-0-UI /FEA=EST /CNT=6 /TID=Rn.9616.1 /TIER=ConsEnd /STK=0 /UG=Rn.9616 /UG_TITLE=ESTs BI288769 testis derived transcript Tes 500040 NM_001039344 0005737 // cytoplasm // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383402_at BE107427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107427 /DB_XREF=gi:8499532 /DB_XREF=UI-R-BS1-ayt-e-12-0-UI.s1 /CLONE=UI-R-BS1-ayt-e-12-0-UI /FEA=EST /CNT=6 /TID=Rn.23352.1 /TIER=ConsEnd /STK=0 /UG=Rn.23352 /UG_TITLE=ESTs BE107427 1383403_at AW523626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523626 /DB_XREF=gi:7166011 /DB_XREF=UI-R-BO0-aic-c-02-0-UI.s1 /CLONE=UI-R-BO0-aic-c-02-0-UI /FEA=EST /CNT=6 /TID=Rn.31078.1 /TIER=ConsEnd /STK=0 /UG=Rn.31078 /UG_TITLE=ESTs AW523626 1383404_at BI295203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295203 /DB_XREF=gi:14958413 /DB_XREF=UI-R-DK0-cet-a-06-0-UI.s1 /CLONE=UI-R-DK0-cet-a-06-0-UI /FEA=EST /CNT=6 /TID=Rn.42114.1 /TIER=ConsEnd /STK=0 /UG=Rn.42114 /UG_TITLE=ESTs BI295203 1383405_at AW254703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254703 /DB_XREF=gi:6598294 /DB_XREF=UI-R-BJ0-adu-g-11-0-UI.s1 /CLONE=UI-R-BJ0-adu-g-11-0-UI /FEA=EST /CNT=6 /TID=Rn.15963.1 /TIER=ConsEnd /STK=0 /UG=Rn.15963 /UG_TITLE=ESTs AW254703 rCG45515-like LOC100364681 100364681 XM_002726078 1383406_at BE103634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103634 /DB_XREF=gi:8495734 /DB_XREF=UI-R-BX0-arg-f-03-0-UI.s1 /CLONE=UI-R-BX0-arg-f-03-0-UI /FEA=EST /CNT=6 /TID=Rn.1961.1 /TIER=ConsEnd /STK=0 /UG=Rn.1961 /UG_TITLE=ESTs BE103634 1383407_at BM390872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390872 /DB_XREF=gi:18190925 /DB_XREF=UI-R-CN1-cjp-c-17-0-UI.s1 /CLONE=UI-R-CN1-cjp-c-17-0-UI /FEA=EST /CNT=6 /TID=Rn.15328.1 /TIER=ConsEnd /STK=0 /UG=Rn.15328 /UG_TITLE=ESTs, Weakly similar to SSN1_MOUSE SAM-DOMAIN PROTEIN SAMSN-1 (M.musculus) BM390872 SAM and SH3 domain containing 3 Sash3 317578 NM_001134992 0002639 // positive regulation of immunoglobulin production // inferred from electronic annotation /// 0002639 // positive regulation of immunoglobulin production // not recorded /// 0002726 // positive regulation of T cell cytokine production // inferred from electronic annotation /// 0002726 // positive regulation of T cell cytokine production // not recorded /// 0002821 // positive regulation of adaptive immune response // inferred from electronic annotation /// 0002821 // positive regulation of adaptive immune response // not recorded /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // not recorded /// 0032729 // positive regulation of interferon-gamma production // inferred from electronic annotation /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0032733 // positive regulation of interleukin-10 production // inferred from electronic annotation /// 0032733 // positive regulation of interleukin-10 production // not recorded /// 0032743 // positive regulation of interleukin-2 production // inferred from electronic annotation /// 0032743 // positive regulation of interleukin-2 production // not recorded /// 0032753 // positive regulation of interleukin-4 production // inferred from electronic annotation /// 0032753 // positive regulation of interleukin-4 production // not recorded /// 0032760 // positive regulation of tumor necrosis factor production // inferred from electronic annotation /// 0032760 // positive regulation of tumor necrosis factor production // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0043372 // positive regulation of CD4-positive, alpha beta T cell differentiation // inferred from electronic annotation /// 0043372 // positive regulation of CD4-positive, alpha beta T cell differentiation // not recorded /// 0046622 // positive regulation of organ growth // inferred from electronic annotation /// 0046622 // positive regulation of organ growth // not recorded /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // not recorded /// 0051251 // positive regulation of lymphocyte activation // inferred from electronic annotation /// 0051251 // positive regulation of lymphocyte activation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1383408_at BI276349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276349 /DB_XREF=gi:14921152 /DB_XREF=UI-R-CW0-bwp-b-04-0-UI.s1 /CLONE=UI-R-CW0-bwp-b-04-0-UI /FEA=EST /CNT=6 /TID=Rn.1854.1 /TIER=ConsEnd /STK=0 /UG=Rn.1854 /UG_TITLE=ESTs BI276349 1383409_at BM383714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383714 /DB_XREF=gi:18183767 /DB_XREF=UI-R-DM1-ckb-i-05-0-UI.s1 /CLONE=UI-R-DM1-ckb-i-05-0-UI /FEA=EST /CNT=6 /TID=Rn.11736.1 /TIER=ConsEnd /STK=0 /UG=Rn.11736 /UG_TITLE=ESTs BM383714 1383410_at BI290777 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290777 /DB_XREF=gi:14949673 /DB_XREF=UI-R-DK0-cga-c-06-0-UI.s1 /CLONE=UI-R-DK0-cga-c-06-0-UI /FEA=EST /CNT=6 /TID=Rn.14612.1 /TIER=ConsEnd /STK=0 /UG=Rn.14612 /UG_TITLE=ESTs, Highly similar to SR54 MOUSE SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN (M.musculus) BI290777 signal recognition particle 54a Srp54a 116650 NM_053871 0006614 // SRP-dependent cotranslational protein targeting to membrane // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0045047 // protein targeting to ER // not recorded /// 0045047 // protein targeting to ER // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005786 // signal recognition particle, endoplasmic reticulum targeting // inferred from electronic annotation /// 0005786 // signal recognition particle, endoplasmic reticulum targeting // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0048500 // signal recognition particle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0008144 // drug binding // inferred from electronic annotation /// 0008144 // drug binding // not recorded /// 0008312 // 7S RNA binding // inferred from electronic annotation /// 0008312 // 7S RNA binding // not recorded /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0019003 // GDP binding // inferred from electronic annotation /// 0019003 // GDP binding // not recorded /// 0030942 // endoplasmic reticulum signal peptide binding // inferred from electronic annotation /// 0030942 // endoplasmic reticulum signal peptide binding // not recorded /// 0043021 // ribonucleoprotein binding // inferred from electronic annotation /// 0043021 // ribonucleoprotein binding // not recorded 1383411_at BM389444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389444 /DB_XREF=gi:18189497 /DB_XREF=UI-R-CN1-cjn-d-07-0-UI.s1 /CLONE=UI-R-CN1-cjn-d-07-0-UI /FEA=EST /CNT=6 /TID=Rn.15113.1 /TIER=ConsEnd /STK=0 /UG=Rn.15113 /UG_TITLE=ESTs BM389444 1383412_at AI070450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070450 /DB_XREF=gi:3396701 /DB_XREF=UI-R-C2-mq-e-01-0-UI.s1 /CLONE=UI-R-C2-mq-e-01-0-UI /FEA=EST /CNT=6 /TID=Rn.19760.1 /TIER=ConsEnd /STK=0 /UG=Rn.19760 /UG_TITLE=ESTs AI070450 1383413_at AW531481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531481 /DB_XREF=gi:7173895 /DB_XREF=UI-R-BO1-aji-e-04-0-UI.s1 /CLONE=UI-R-BO1-aji-e-04-0-UI /FEA=EST /CNT=6 /TID=Rn.22829.1 /TIER=ConsEnd /STK=0 /UG=Rn.22829 /UG_TITLE=ESTs AW531481 hedgehog acyltransferase-like Hhatl 301073 NM_001106868 0060262 // negative regulation of N-terminal protein palmitoylation // not recorded 0005783 // endoplasmic reticulum // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1383414_at BG373072 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373072 /DB_XREF=gi:13269609 /DB_XREF=UI-R-CV1-bsf-b-09-0-UI.s1 /CLONE=UI-R-CV1-bsf-b-09-0-UI /FEA=EST /CNT=6 /TID=Rn.41511.1 /TIER=ConsEnd /STK=0 /UG=Rn.41511 /UG_TITLE=ESTs BG373072 similar to 9930012K11Rik protein RGD1308117 361066 NM_001134571 1383415_at AW531415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531415 /DB_XREF=gi:7173829 /DB_XREF=UI-R-BS0-amm-g-01-0-UI.s1 /CLONE=UI-R-BS0-amm-g-01-0-UI /FEA=EST /CNT=6 /TID=Rn.8554.1 /TIER=ConsEnd /STK=0 /UG=Rn.8554 /UG_TITLE=ESTs AW531415 1383416_at AA899304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899304 /DB_XREF=gi:4231802 /DB_XREF=UI-R-E0-cz-a-06-0-UI.s1 /CLONE=UI-R-E0-cz-a-06-0-UI /FEA=EST /CNT=6 /TID=Rn.14086.1 /TIER=ConsEnd /STK=0 /UG=Rn.14086 /UG_TITLE=ESTs AA899304 Acetyl-coenzyme A acetyltransferase 1 Acat1 25014 NM_017075 0001889 // liver development // inferred from expression pattern /// 0007420 // brain development // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0042594 // response to starvation // inferred from expression pattern /// 0051260 // protein homooligomerization // inferred from direct assay /// 0060612 // adipose tissue development // inferred from expression pattern /// 0072229 // metanephric proximal convoluted tubule development // inferred from expression pattern 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0003985 // acetyl-CoA C-acetyltransferase activity // inferred from direct assay /// 0003985 // acetyl-CoA C-acetyltransferase activity // not recorded /// 0003985 // acetyl-CoA C-acetyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from physical interaction 1383417_at BE119990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119990 /DB_XREF=gi:8512095 /DB_XREF=UI-R-CA0-bao-c-12-0-UI.s1 /CLONE=UI-R-CA0-bao-c-12-0-UI /FEA=EST /CNT=6 /TID=Rn.12497.1 /TIER=ConsEnd /STK=0 /UG=Rn.12497 /UG_TITLE=ESTs BE119990 Bardet-Biedl syndrome 1 Bbs1 309156 NM_001107569 0000226 // microtubule cytoskeleton organization // not recorded /// 0001895 // retina homeostasis // not recorded /// 0007608 // sensory perception of smell // not recorded /// 0008594 // photoreceptor cell morphogenesis // not recorded /// 0009296 // flagellum assembly // not recorded /// 0009566 // fertilization // not recorded /// 0016358 // dendrite development // not recorded /// 0021756 // striatum development // not recorded /// 0021766 // hippocampus development // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0030534 // adult behavior // not recorded /// 0035058 // sensory cilium assembly // not recorded /// 0035264 // multicellular organism growth // not recorded /// 0042048 // olfactory behavior // not recorded /// 0042384 // cilium assembly // not recorded /// 0042445 // hormone metabolic process // not recorded /// 0044255 // cellular lipid metabolic process // not recorded /// 0045444 // fat cell differentiation // not recorded /// 0045494 // photoreceptor cell maintenance // not recorded /// 0048854 // brain morphogenesis // not recorded /// 0060271 // cilium morphogenesis // not recorded /// 0060296 // regulation of cilium beat frequency involved in ciliary motility // not recorded 0031514 // motile secondary cilium // not recorded /// 0034464 // BBSome // not recorded 0005515 // protein binding // not recorded 1383418_at BG377805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377805 /DB_XREF=gi:13302277 /DB_XREF=UI-R-CU0-bvf-d-04-0-UI.s1 /CLONE=UI-R-CU0-bvf-d-04-0-UI /FEA=EST /CNT=6 /TID=Rn.20276.2 /TIER=ConsEnd /STK=0 /UG=Rn.20276 /UG_TITLE=ESTs, Moderately similar to LAMININ GAMMA-2 CHAIN PRECURSOR (M.musculus) BG377805 ADAM metallopeptidase domain 11 Adam11 360638 NM_001108300 0006508 // proteolysis // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1383419_at BE106398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106398 /DB_XREF=gi:8498500 /DB_XREF=UI-R-BT1-asv-e-05-0-UI.s1 /CLONE=UI-R-BT1-asv-e-05-0-UI /FEA=EST /CNT=6 /TID=Rn.22819.1 /TIER=ConsEnd /STK=0 /UG=Rn.22819 /UG_TITLE=ESTs BE106398 Lipoma HMGIC fusion partner-like 3 Lhfpl3 499977 XM_001062080 /// XM_575331 1383420_at BM390554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390554 /DB_XREF=gi:18190607 /DB_XREF=UI-R-CN1-cjr-g-05-0-UI.s1 /CLONE=UI-R-CN1-cjr-g-05-0-UI /FEA=EST /CNT=6 /TID=Rn.24314.1 /TIER=ConsEnd /STK=0 /UG=Rn.24314 /UG_TITLE=ESTs, Weakly similar to S30825 AFG1 protein - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BM390554 lactation elevated 1 Lace1 502479 NM_001037656 0005739 // mitochondrion // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1383421_at BM386110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386110 /DB_XREF=gi:18186163 /DB_XREF=UI-R-CN1-cjf-a-05-0-UI.s1 /CLONE=UI-R-CN1-cjf-a-05-0-UI /FEA=EST /CNT=6 /TID=Rn.27228.1 /TIER=ConsEnd /STK=0 /UG=Rn.27228 /UG_TITLE=ESTs BM386110 1383422_at AW252401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252401 /DB_XREF=gi:6595992 /DB_XREF=UI-R-BJ0-adx-a-04-0-UI.s1 /CLONE=UI-R-BJ0-adx-a-04-0-UI /FEA=EST /CNT=6 /TID=Rn.29388.1 /TIER=ConsEnd /STK=0 /UG=Rn.29388 /UG_TITLE=ESTs AW252401 BEN domain containing 5 Bend5 362564 NM_001108672 0005794 // Golgi apparatus // not recorded 1383423_at BI295136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295136 /DB_XREF=gi:14958279 /DB_XREF=UI-R-DK0-ceg-c-02-0-UI.s1 /CLONE=UI-R-DK0-ceg-c-02-0-UI /FEA=EST /CNT=6 /TID=Rn.6470.1 /TIER=ConsEnd /STK=0 /UG=Rn.6470 /UG_TITLE=ESTs BI295136 1383424_at BI276216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276216 /DB_XREF=gi:14920915 /DB_XREF=UI-R-CX0-bxf-d-11-0-UI.s1 /CLONE=UI-R-CX0-bxf-d-11-0-UI /FEA=EST /CNT=6 /TID=Rn.20032.1 /TIER=ConsEnd /STK=0 /UG=Rn.20032 /UG_TITLE=ESTs BI276216 cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial Cmpk2 314004 NM_001108017 0006233 // dTDP biosynthetic process // inferred from electronic annotation /// 0071222 // cellular response to lipopolysaccharide // not recorded 0005739 // mitochondrion // not recorded 0004127 // cytidylate kinase activity // not recorded /// 0004798 // thymidylate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0033862 // UMP kinase activity // not recorded 1383425_at BI290729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290729 /DB_XREF=gi:14949574 /DB_XREF=UI-R-DK0-cfy-g-01-0-UI.s1 /CLONE=UI-R-DK0-cfy-g-01-0-UI /FEA=EST /CNT=6 /TID=Rn.21259.1 /TIER=ConsEnd /STK=0 /UG=Rn.21259 /UG_TITLE=ESTs, Moderately similar to CO5 MOUSE COMPLEMENT C5 PRECURSOR (M.musculus) BI290729 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1383426_at BI290159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290159 /DB_XREF=gi:14948470 /DB_XREF=UI-R-DK0-cfs-g-12-0-UI.s1 /CLONE=UI-R-DK0-cfs-g-12-0-UI /FEA=EST /CNT=6 /TID=Rn.6937.1 /TIER=ConsEnd /STK=0 /UG=Rn.6937 /UG_TITLE=ESTs, Weakly similar to GAS7_RAT GROWTH-ARREST-SPECIFIC PROTEIN 7 (GAS-7) (R.norvegicus) BI290159 proline-serine-threonine phosphatase-interacting protein 1 Pstpip1 300732 NM_001106824 0001725 // stress fiber // inferred from electronic annotation /// 0001725 // stress fiber // not recorded /// 0005826 // actomyosin contractile ring // inferred from electronic annotation /// 0005826 // actomyosin contractile ring // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // not recorded 1383427_at AI229831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229831 /DB_XREF=gi:3813718 /DB_XREF=EST226526 /CLONE=REMCN15 /FEA=EST /CNT=6 /TID=Rn.11935.1 /TIER=ConsEnd /STK=0 /UG=Rn.11935 /UG_TITLE=ESTs, Weakly similar to M1B1_HUMAN Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase (ER alpha-1,2-mannosidase) (Mannosidase alpha class 1B member 1) (Man9GlcNAc2-specific processing alpha-mannosidase) (H.sapiens) AI229831 mannosidase, alpha, class 1B, member 1 Man1b1 499751 XM_001077558 /// XM_575086 0008152 // metabolic process // inferred from electronic annotation /// 0030433 // ER-associated protein catabolic process // inferred from electronic annotation /// 0030433 // ER-associated protein catabolic process // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004571 // mannosyl-oligosaccharide 1,2-alpha-mannosidase activity // inferred from electronic annotation /// 0004571 // mannosyl-oligosaccharide 1,2-alpha-mannosidase activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation 1383428_at AA923920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA923920 /DB_XREF=gi:4234012 /DB_XREF=UI-R-A1-dr-d-11-0-UI.s1 /CLONE=UI-R-A1-dr-d-11-0-UI /FEA=EST /CNT=6 /TID=Rn.8146.1 /TIER=ConsEnd /STK=0 /UG=Rn.8146 /UG_TITLE=ESTs AA923920 armadillo repeat containing 8 Armc8 315949 NM_001173354 /// XM_002727126 /// XM_236599 0005488 // binding // inferred from electronic annotation 1383429_at BI289160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289160 /DB_XREF=gi:14946450 /DB_XREF=UI-R-DK0-cfm-c-09-0-UI.s1 /CLONE=UI-R-DK0-cfm-c-09-0-UI /FEA=EST /CNT=6 /TID=Rn.18726.1 /TIER=ConsEnd /STK=0 /UG=Rn.18726 /UG_TITLE=ESTs, Weakly similar to C61A MOUSE C6.1A PROTEIN (M.musculus) BI289160 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 Psmd14 311078 NM_001025689 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0061136 // regulation of proteasomal protein catabolic process // not recorded 0000502 // proteasome complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0061133 // endopeptidase activator activity // not recorded /// 0070628 // proteasome binding // inferred from electronic annotation /// 0070628 // proteasome binding // not recorded 1383430_at BF414509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414509 /DB_XREF=gi:11402498 /DB_XREF=UI-R-BJ2-boq-e-02-0-UI.s1 /CLONE=UI-R-BJ2-boq-e-02-0-UI /FEA=EST /CNT=6 /TID=Rn.45701.1 /TIER=ConsEnd /STK=0 /UG=Rn.45701 /UG_TITLE=ESTs BF414509 tRNA splicing endonuclease 2 homolog (S. cerevisiae) Tsen2 312649 NM_001014057 0006388 // tRNA splicing, via endonucleolytic cleavage and ligation // inferred from electronic annotation /// 0006388 // tRNA splicing, via endonucleolytic cleavage and ligation // not recorded /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation 0000214 // tRNA-intron endonuclease complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation 0000213 // tRNA-intron endonuclease activity // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1383431_at BF404209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404209 /DB_XREF=gi:11392184 /DB_XREF=UI-R-CA1-biw-g-20-0-UI.s1 /CLONE=UI-R-CA1-biw-g-20-0-UI /FEA=EST /CNT=6 /TID=Rn.50692.1 /TIER=ConsEnd /STK=0 /UG=Rn.50692 /UG_TITLE=ESTs BF404209 1383432_at AI716676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716676 /DB_XREF=gi:5033932 /DB_XREF=UI-R-Y0-acc-h-04-0-UI.s1 /CLONE=UI-R-Y0-acc-h-04-0-UI /FEA=EST /CNT=6 /TID=Rn.23556.1 /TIER=ConsEnd /STK=0 /UG=Rn.23556 /UG_TITLE=ESTs AI716676 death associated protein-like 1 Dapl1 362136 NM_001108582 1383433_at BI281874 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281874 /DB_XREF=gi:14932060 /DB_XREF=UI-R-CU0s-cbt-f-02-0-UI.s1 /CLONE=UI-R-CU0s-cbt-f-02-0-UI /FEA=EST /CNT=6 /TID=Rn.14659.1 /TIER=ConsEnd /STK=0 /UG=Rn.14659 /UG_TITLE=ESTs BI281874 kelch-like 23 (Drosophila) Klhl23 311114 NM_001134504 0005515 // protein binding // inferred from electronic annotation 1383434_at AA997640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997640 /DB_XREF=gi:4280922 /DB_XREF=UI-R-C0-hm-a-05-0-UI.s1 /CLONE=UI-R-C0-hm-a-05-0-UI /FEA=EST /CNT=6 /TID=Rn.12530.1 /TIER=ConsEnd /STK=0 /UG=Rn.12530 /UG_TITLE=ESTs AA997640 pyrroline-5-carboxylate reductase 1 Pycr1 287877 NM_001105857 0006561 // proline biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0034599 // cellular response to oxidative stress // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004735 // pyrroline-5-carboxylate reductase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1383435_at BF542912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542912 /DB_XREF=gi:11634019 /DB_XREF=UI-R-C3-tp-d-04-0-UI.r1 /CLONE=UI-R-C3-tp-d-04-0-UI /FEA=EST /CNT=6 /TID=Rn.23026.1 /TIER=ConsEnd /STK=0 /UG=Rn.23026 /UG_TITLE=ESTs BF542912 sodium channel, voltage-gated, type III, beta Scn3b 245956 NM_139097 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0007399 // nervous system development // inferred from expression pattern /// 0019233 // sensory perception of pain // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // inferred from electronic annotation 1383436_at BG376768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376768 /DB_XREF=gi:13301240 /DB_XREF=UI-R-CU0-buv-g-01-0-UI.s1 /CLONE=UI-R-CU0-buv-g-01-0-UI /FEA=EST /CNT=6 /TID=Rn.24407.1 /TIER=ConsEnd /STK=0 /UG=Rn.24407 /UG_TITLE=ESTs BG376768 1383437_at AI547691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547691 /DB_XREF=gi:4465179 /DB_XREF=UI-R-C3-th-c-02-0-UI.s1 /CLONE=UI-R-C3-th-c-02-0-UI /FEA=EST /CNT=6 /TID=Rn.24214.1 /TIER=ConsEnd /STK=0 /UG=Rn.24214 /UG_TITLE=ESTs, Moderately similar to RB17 MOUSE RAS-RELATED PROTEIN RAB-17 (M.musculus) AI547691 RAB17, member RAS oncogene family Rab17 503269 NM_001109363 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1383438_at H31112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31112 /DB_XREF=gi:976534 /DB_XREF=EST104831 /FEA=EST /CNT=6 /TID=Rn.3865.2 /TIER=ConsEnd /STK=0 /UG=Rn.3865 /UG_TITLE=ESTs, Weakly similar to T08812 probable succinate--CoA ligase (H.sapiens) H31112 Succinate-CoA ligase, ADP-forming, beta subunit Sucla2 361071 NM_001108387 0006099 // tricarboxylic acid cycle // inferred from direct assay /// 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006104 // succinyl-CoA metabolic process // inferred from direct assay /// 0006105 // succinate metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004775 // succinate-CoA ligase (ADP-forming) activity // inferred from direct assay /// 0004775 // succinate-CoA ligase (ADP-forming) activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1383439_at BI278550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278550 /DB_XREF=gi:14925506 /DB_XREF=UI-R-CW0-bxn-b-01-0-UI.s1 /CLONE=UI-R-CW0-bxn-b-01-0-UI /FEA=EST /CNT=6 /TID=Rn.8285.1 /TIER=ConsEnd /STK=0 /UG=Rn.8285 /UG_TITLE=ESTs BI278550 neuronal PAS domain protein 2 Npas2 316351 NM_001108214 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0042745 // circadian sleep/wake cycle // inferred from electronic annotation /// 0042745 // circadian sleep/wake cycle // not recorded /// 0045475 // locomotor rhythm // inferred from electronic annotation /// 0045475 // locomotor rhythm // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0051879 // Hsp90 protein binding // inferred from electronic annotation /// 0051879 // Hsp90 protein binding // not recorded 1383440_at BF418459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418459 /DB_XREF=gi:11406448 /DB_XREF=UI-R-BJ2-bqf-h-06-0-UI.s1 /CLONE=UI-R-BJ2-bqf-h-06-0-UI /FEA=EST /CNT=6 /TID=Rn.19446.1 /TIER=ConsEnd /STK=0 /UG=Rn.19446 /UG_TITLE=ESTs, Weakly similar to 1-aminocyclopropane-1-carboxylate synthase (Caenorhabditis elegans) (C.elegans) BF418459 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional) Accs 311218 XM_001074505 /// XM_001078618 0009058 // biosynthetic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016847 // 1-aminocyclopropane-1-carboxylate synthase activity // inferred from electronic annotation /// 0016847 // 1-aminocyclopropane-1-carboxylate synthase activity // not recorded /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1383441_at BF413614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413614 /DB_XREF=gi:11401603 /DB_XREF=UI-R-CA0-bog-d-09-0-UI.s1 /CLONE=UI-R-CA0-bog-d-09-0-UI /FEA=EST /CNT=6 /TID=Rn.49019.1 /TIER=ConsEnd /STK=0 /UG=Rn.49019 /UG_TITLE=ESTs BF413614 SAP30 binding protein Sap30bp 360662 NM_001108305 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383442_at BF403045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403045 /DB_XREF=gi:11391020 /DB_XREF=UI-R-CA0-bhl-h-03-0-UI.s1 /CLONE=UI-R-CA0-bhl-h-03-0-UI /FEA=EST /CNT=6 /TID=Rn.50152.1 /TIER=ConsEnd /STK=0 /UG=Rn.50152 /UG_TITLE=ESTs BF403045 MORN repeat containing 1 Morn1 298676 NM_001005544 1383443_at AI146079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146079 /DB_XREF=gi:3667878 /DB_XREF=UI-R-A1-ew-b-12-0-UI.s1 /CLONE=UI-R-A1-ew-b-12-0-UI /FEA=EST /CNT=6 /TID=Rn.24906.2 /TIER=ConsEnd /STK=0 /UG=Rn.24906 /UG_TITLE=ESTs AI146079 similar to UPF0308 protein C9orf21 LOC498685 498685 NM_001109114 0016491 // oxidoreductase activity // inferred from electronic annotation 1383444_at AA964069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964069 /DB_XREF=gi:4278945 /DB_XREF=UI-R-C0-gw-c-01-0-UI.s1 /CLONE=UI-R-C0-gw-c-01-0-UI /FEA=EST /CNT=13 /TID=Rn.26652.1 /TIER=ConsEnd /STK=0 /UG=Rn.26652 /UG_TITLE=ESTs AA964069 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 Slc24a2 84550 NM_031743 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0007601 // visual perception // inferred from electronic annotation /// 0007612 // learning // inferred from electronic annotation /// 0007612 // learning // not recorded /// 0007613 // memory // inferred from electronic annotation /// 0007613 // memory // not recorded /// 0050896 // response to stimulus // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060291 // long-term synaptic potentiation // inferred from electronic annotation /// 0060291 // long-term synaptic potentiation // not recorded /// 0060292 // long term synaptic depression // inferred from electronic annotation /// 0060292 // long term synaptic depression // not recorded /// 0070588 // calcium ion transmembrane transport // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005262 // calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // not recorded /// 0008273 // calcium, potassium:sodium antiporter activity // traceable author statement /// 0015293 // symporter activity // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from mutant phenotype 1383445_at BG667490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667490 /DB_XREF=gi:13889412 /DB_XREF=DRA03D11 /CLONE=DRA03D11 /FEA=EST /CNT=11 /TID=Rn.44991.1 /TIER=ConsEnd /STK=0 /UG=Rn.44991 /UG_TITLE=ESTs, Weakly similar to TC17 RAT TRANSCRIPTION FACTOR 17 (R.norvegicus) BG667490 zinc finger protein 191 Zfp191 360204 NM_182955 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0042552 // myelination // not recorded /// 0042552 // myelination // inferred from sequence or structural similarity /// 0042552 // myelination // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383446_at BF553979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF553979 /DB_XREF=gi:11663709 /DB_XREF=UI-R-C0-ig-f-09-0-UI.r1 /CLONE=UI-R-C0-ig-f-09-0-UI /FEA=EST /CNT=9 /TID=Rn.23801.1 /TIER=ConsEnd /STK=0 /UG=Rn.23801 /UG_TITLE=ESTs BF553979 N(alpha)-acetyltransferase 25, NatB auxiliary subunit Naa25 360811 NM_001047900 0005737 // cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383447_at AI101323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101323 /DB_XREF=gi:3706241 /DB_XREF=EST210612 /CLONE=RBRBL42 /FEA=EST /CNT=8 /TID=Rn.22666.1 /TIER=ConsEnd /STK=0 /UG=Rn.22666 /UG_TITLE=ESTs, Highly similar to ERM_HUMAN ETS-RELATED PROTEIN ERM (H.sapiens) AI101323 ets variant 5 Etv5 303828 NM_001107082 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0034599 // cellular response to oxidative stress // not recorded /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0045941 // positive regulation of transcription // not recorded /// 0048133 // male germ-line stem cell division // inferred from mutant phenotype /// 0060252 // positive regulation of glial cell proliferation // inferred from mutant phenotype /// 0060762 // regulation of branching involved in mammary gland duct morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1383448_at AI029121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029121 /DB_XREF=gi:4296372 /DB_XREF=UI-R-C0-ip-c-09-0-UI.s1 /CLONE=UI-R-C0-ip-c-09-0-UI /FEA=EST /CNT=8 /TID=Rn.18149.1 /TIER=ConsEnd /STK=0 /UG=Rn.18149 /UG_TITLE=ESTs, Moderately similar to TRANSCRIPTIONAL REGULATOR ISGF3 GAMMA SUBUNIT (M.musculus) AI029121 interferon regulatory factor 9 Irf9 305896 NM_001012041 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045351 // type I interferon biosynthetic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1383449_at AA801218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA801218 /DB_XREF=gi:4131585 /DB_XREF=EST190715 /CLONE=RPLAB28 /FEA=EST /CNT=7 /TID=Rn.31888.1 /TIER=ConsEnd /STK=0 /UG=Rn.31888 /UG_TITLE=ESTs AA801218 1383450_at BF556790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556790 /DB_XREF=gi:11666514 /DB_XREF=UI-R-E1-fe-g-04-0-UI.r1 /CLONE=UI-R-E1-fe-g-04-0-UI /FEA=EST /CNT=7 /TID=Rn.44846.1 /TIER=ConsEnd /STK=0 /UG=Rn.44846 /UG_TITLE=ESTs, Moderately similar to T42705 hypothetical protein DKFZp434K098.1 (H.sapiens) BF556790 CCR4-NOT transcription complex, subunit 6 Cnot6 287249 NM_001013856 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383451_at AA848210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848210 /DB_XREF=gi:2935750 /DB_XREF=EST190970 /CLONE=RHEAC03 /FEA=EST /CNT=7 /TID=Rn.42784.1 /TIER=ConsEnd /STK=0 /UG=Rn.42784 /UG_TITLE=ESTs, Weakly similar to LIS1 MOUSE PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB ALPHA SUBUNIT (R.norvegicus) AA848210 WD repeat and SOCS box-containing 2 Wsb2 288692 NM_001007616 0023034 // intracellular signaling pathway // inferred from electronic annotation 1383452_at BG670461 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670461 /DB_XREF=gi:13892560 /DB_XREF=DRNBBE02 /CLONE=DRNBBE02 /FEA=EST /CNT=7 /TID=Rn.46637.1 /TIER=ConsEnd /STK=0 /UG=Rn.46637 /UG_TITLE=ESTs BG670461 1383453_at AA946156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946156 /DB_XREF=gi:3106072 /DB_XREF=EST201655 /CLONE=RLUBB80 /FEA=EST /CNT=7 /TID=Rn.24947.1 /TIER=ConsEnd /STK=0 /UG=Rn.24947 /UG_TITLE=ESTs AA946156 olfactomedin-like 1 Olfml1 361621 NM_001013192 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383454_a_at BM389456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389456 /DB_XREF=gi:18189504 /DB_XREF=UI-R-CN1-cjn-d-21-0-UI.s1 /CLONE=UI-R-CN1-cjn-d-21-0-UI /FEA=EST /CNT=7 /TID=Rn.18064.1 /TIER=ConsEnd /STK=0 /UG=Rn.18064 /UG_TITLE=ESTs BM389456 ribosomal protein S6 kinase, polypeptide 1 Rps6kc1 289342 NM_001105984 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation 0005769 // early endosome // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1383455_at BF553211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF553211 /DB_XREF=gi:11662941 /DB_XREF=UI-R-C2-nk-b-02-0-UI.r1 /CLONE=UI-R-C2-nk-b-02-0-UI /FEA=EST /CNT=7 /TID=Rn.11959.1 /TIER=ConsEnd /STK=0 /UG=Rn.11959 /UG_TITLE=ESTs, Weakly similar to SYW MOUSE TRYPTOPHANYL-TRNA SYNTHETASE (M.musculus) BF553211 glutamyl-prolyl-tRNA synthetase Eprs 289352 NM_001024238 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006424 // glutamyl-tRNA aminoacylation // inferred from electronic annotation /// 0006433 // prolyl-tRNA aminoacylation // inferred from electronic annotation /// 0043039 // tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004818 // glutamate-tRNA ligase activity // inferred from electronic annotation /// 0004818 // glutamate-tRNA ligase activity // not recorded /// 0004827 // proline-tRNA ligase activity // inferred from electronic annotation /// 0004827 // proline-tRNA ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016876 // ligase activity, forming aminoacyl-tRNA and related compounds // inferred from electronic annotation 1383456_at BI298788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298788 /DB_XREF=gi:14975068 /DB_XREF=UI-R-CV2-chn-f-10-0-UI.s1 /CLONE=UI-R-CV2-chn-f-10-0-UI /FEA=EST /CNT=7 /TID=Rn.15053.1 /TIER=ConsEnd /STK=0 /UG=Rn.15053 /UG_TITLE=ESTs BI298788 1383457_at AI709793 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709793 /DB_XREF=gi:4999569 /DB_XREF=UI-R-C3-tj-g-02-0-UI.s1 /CLONE=UI-R-C3-tj-g-02-0-UI /FEA=EST /CNT=7 /TID=Rn.24654.1 /TIER=ConsEnd /STK=0 /UG=Rn.24654 /UG_TITLE=ESTs AI709793 1383458_at BF403759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403759 /DB_XREF=gi:11391734 /DB_XREF=UI-R-CA1-bjc-h-16-0-UI.s1 /CLONE=UI-R-CA1-bjc-h-16-0-UI /FEA=EST /CNT=7 /TID=Rn.49514.1 /TIER=ConsEnd /STK=0 /UG=Rn.49514 /UG_TITLE=ESTs BF403759 1383459_at AI764525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764525 /DB_XREF=gi:5210460 /DB_XREF=UI-R-Y0-abv-a-01-0-UI.s2 /CLONE=UI-R-Y0-abv-a-01-0-UI /FEA=EST /CNT=7 /TID=Rn.2000.1 /TIER=ConsEnd /STK=0 /UG=Rn.2000 /UG_TITLE=ESTs AI764525 leucine-rich repeat LGI family, member 3 Lgi3 306013 NM_001107277 0017157 // regulation of exocytosis // not recorded 0008021 // synaptic vesicle // not recorded /// 0019717 // synaptosome // not recorded 0005515 // protein binding // not recorded 1383460_at AI058976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058976 /DB_XREF=gi:3332753 /DB_XREF=UI-R-C1-lq-a-08-0-UI.s1 /CLONE=UI-R-C1-lq-a-08-0-UI /FEA=EST /CNT=7 /TID=Rn.6638.1 /TIER=ConsEnd /STK=0 /UG=Rn.6638 /UG_TITLE=ESTs AI058976 1383461_at AA946382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946382 /DB_XREF=gi:3106298 /DB_XREF=EST201881 /CLONE=RLUBH47 /FEA=EST /CNT=7 /TID=Rn.8036.1 /TIER=ConsEnd /STK=0 /UG=Rn.8036 /UG_TITLE=ESTs AA946382 WDYHV motif containing 1 Wdyhv1 362914 NM_001025024 0006464 // protein modification process // not recorded /// 0006464 // protein modification process // inferred from sequence or structural similarity /// 0006464 // protein modification process // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0070773 // protein N-terminal glutamine amidohydrolase activity // not recorded /// 0070773 // protein N-terminal glutamine amidohydrolase activity // inferred from sequence or structural similarity /// 0070773 // protein N-terminal glutamine amidohydrolase activity // inferred from electronic annotation 1383462_at BF566263 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF566263 /DB_XREF=gi:11675993 /DB_XREF=UI-R-BT1-akb-g-08-0-UI.r1 /CLONE=UI-R-BT1-akb-g-08-0-UI /FEA=EST /CNT=6 /TID=Rn.44204.1 /TIER=ConsEnd /STK=0 /UG=Rn.44204 /UG_TITLE=ESTs, Highly similar to Z294_HUMAN ZINC FINGER PROTEIN 294 (H.sapiens) BF566263 ring finger protein 160 Rnf160 288308 NM_001024235 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383463_at AW918514 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918514 /DB_XREF=gi:8084292 /DB_XREF=EST349818 /CLONE=RGIEU22 /FEA=EST /CNT=6 /TID=Rn.8969.1 /TIER=ConsEnd /STK=0 /UG=Rn.8969 /UG_TITLE=ESTs AW918514 zinc finger protein 91 Zfp91 246282 NM_001169120 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1383464_at AW141617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141617 /DB_XREF=gi:6161425 /DB_XREF=EST291681 /CLONE=RGICB23 /FEA=EST /CNT=6 /TID=Rn.3447.2 /TIER=ConsEnd /STK=0 /UG=Rn.3447 /UG_TITLE=ESTs, Highly similar to PEROXISOMAL FARNESYLATED PROTEIN (H.sapiens) AW141617 peroxisomal biogenesis factor 19 Pex19 289233 NM_001107375 /// NM_001134777 0007031 // peroxisome organization // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 1383465_at AI058747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058747 /DB_XREF=gi:3332524 /DB_XREF=UI-R-C1-kp-f-01-0-UI.s1 /CLONE=UI-R-C1-kp-f-01-0-UI /FEA=EST /CNT=6 /TID=Rn.18972.1 /TIER=ConsEnd /STK=0 /UG=Rn.18972 /UG_TITLE=ESTs AI058747 F-box and leucine-rich repeat protein 14 Fbxl14 312675 XM_002726438 /// XM_232330 0005515 // protein binding // inferred from electronic annotation 1383466_at BG667930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667930 /DB_XREF=gi:13889852 /DB_XREF=DRABQG09 /CLONE=DRABQG09 /FEA=EST /CNT=6 /TID=Rn.20627.1 /TIER=ConsEnd /STK=0 /UG=Rn.20627 /UG_TITLE=ESTs BG667930 splicing factor, arginine/serine-rich 6 Sfrs6 362264 NM_001014185 0008380 // RNA splicing // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383467_at AW918173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918173 /DB_XREF=gi:8083943 /DB_XREF=EST349477 /CLONE=RGIEN41 /FEA=EST /CNT=6 /TID=Rn.23462.1 /TIER=ConsEnd /STK=0 /UG=Rn.23462 /UG_TITLE=ESTs, Highly similar to T17303 hypothetical protein DKFZp566F2124.1 (H.sapiens) AW918173 enhancer of polycomb homolog 2 (Drosophila) Epc2 362132 NM_001108581 1383468_at BM958512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM958512 /DB_XREF=gi:19541942 /DB_XREF=EST /FEA=EST /CNT=6 /TID=Rn.22663.1 /TIER=ConsEnd /STK=0 /UG=Rn.22663 /UG_TITLE=ESTs BM958512 1383469_at BG377269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377269 /DB_XREF=gi:13301741 /DB_XREF=UI-R-CU0-bux-e-01-0-UI.s1 /CLONE=UI-R-CU0-bux-e-01-0-UI /FEA=EST /CNT=6 /TID=Rn.8297.1 /TIER=ConsEnd /STK=0 /UG=Rn.8297 /UG_TITLE=ESTs BG377269 aldehyde dehydrogenase 1 family, member A3 Aldh1a3 266603 NM_153300 0001822 // kidney development // inferred from expression pattern /// 0002072 // optic cup morphogenesis involved in camera-type eye development // inferred from electronic annotation /// 0002072 // optic cup morphogenesis involved in camera-type eye development // not recorded /// 0002138 // retinoic acid biosynthetic process // inferred from electronic annotation /// 0002138 // retinoic acid biosynthetic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0021768 // nucleus accumbens development // inferred from electronic annotation /// 0021768 // nucleus accumbens development // not recorded /// 0021983 // pituitary gland development // inferred from expression pattern /// 0031076 // embryonic camera-type eye development // inferred from electronic annotation /// 0031076 // embryonic camera-type eye development // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042573 // retinoic acid metabolic process // not recorded /// 0042573 // retinoic acid metabolic process // inferred from electronic annotation /// 0042574 // retinal metabolic process // inferred from electronic annotation /// 0042574 // retinal metabolic process // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0048048 // embryonic eye morphogenesis // inferred from electronic annotation /// 0048048 // embryonic eye morphogenesis // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060166 // olfactory pit development // inferred from electronic annotation /// 0060166 // olfactory pit development // not recorded /// 0060324 // face development // inferred from electronic annotation /// 0060324 // face development // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // non-traceable author statement 0004029 // aldehyde dehydrogenase (NAD) activity // inferred from electronic annotation /// 0004029 // aldehyde dehydrogenase (NAD) activity // not recorded /// 0004030 // aldehyde dehydrogenase [NAD(P)+] activity // inferred from direct assay /// 0004030 // aldehyde dehydrogenase [NAD(P)+] activity // not recorded /// 0004030 // aldehyde dehydrogenase [NAD(P)+] activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0070324 // thyroid hormone binding // inferred from electronic annotation /// 0070324 // thyroid hormone binding // not recorded /// 0070403 // NAD binding // inferred from electronic annotation /// 0070403 // NAD binding // not recorded 1383470_at AI548857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548857 /DB_XREF=gi:4466345 /DB_XREF=UI-R-C3-tz-e-11-0-UI.s1 /CLONE=UI-R-C3-tz-e-11-0-UI /FEA=EST /CNT=6 /TID=Rn.44126.1 /TIER=ConsEnd /STK=0 /UG=Rn.44126 /UG_TITLE=ESTs AI548857 1383471_at BI286125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286125 /DB_XREF=gi:14940461 /DB_XREF=UI-R-DE0-cah-a-02-0-UI.s1 /CLONE=UI-R-DE0-cah-a-02-0-UI /FEA=EST /CNT=6 /TID=Rn.16498.1 /TIER=ConsEnd /STK=0 /UG=Rn.16498 /UG_TITLE=ESTs BI286125 solute carrier family 46, member 3 Slc46a3 288454 NM_001024968 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1383472_at AA997683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997683 /DB_XREF=gi:4280965 /DB_XREF=UI-R-C0-hm-d-12-0-UI.s1 /CLONE=UI-R-C0-hm-d-12-0-UI /FEA=EST /CNT=6 /TID=Rn.12547.1 /TIER=ConsEnd /STK=0 /UG=Rn.12547 /UG_TITLE=ESTs, Moderately similar to DHAM RAT ALDEHYDE DEHYDROGENASE, MITOCHONDRIAL PRECURSOR (R.norvegicus) AA997683 aldehyde dehydrogenase 1 family, member B1 Aldh1b1 298079 NM_001011975 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0004029 // aldehyde dehydrogenase (NAD) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1383473_at BF551504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551504 /DB_XREF=gi:11661234 /DB_XREF=UI-R-C1-kc-g-03-0-UI.r1 /CLONE=UI-R-C1-kc-g-03-0-UI /FEA=EST /CNT=6 /TID=Rn.47870.1 /TIER=ConsEnd /STK=0 /UG=Rn.47870 /UG_TITLE=ESTs BF551504 1383474_at BI274988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274988 /DB_XREF=gi:14886419 /DB_XREF=UI-R-CX0-bwt-d-04-0-UI.s1 /CLONE=UI-R-CX0-bwt-d-04-0-UI /FEA=EST /CNT=6 /TID=Rn.17123.1 /TIER=ConsEnd /STK=0 /UG=Rn.17123 /UG_TITLE=ESTs BI274988 interleukin-1 receptor-associated kinase 2 Irak2 362418 NM_001025422 0001959 // regulation of cytokine-mediated signaling pathway // inferred from electronic annotation /// 0001959 // regulation of cytokine-mediated signaling pathway // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007250 // activation of NF-kappaB-inducing kinase activity // not recorded /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0031663 // lipopolysaccharide-mediated signaling pathway // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0043433 // negative regulation of transcription factor activity // inferred from electronic annotation /// 0046777 // protein autophosphorylation // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0070498 // interleukin-1-mediated signaling pathway // inferred from electronic annotation /// 0070498 // interleukin-1-mediated signaling pathway // not recorded /// 0070555 // response to interleukin-1 // inferred from electronic annotation /// 0070555 // response to interleukin-1 // not recorded 0005829 // cytosol // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded 0004672 // protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1383475_at AW521250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521250 /DB_XREF=gi:7163628 /DB_XREF=UI-R-BJ0p-afb-a-04-0-UI.s1 /CLONE=UI-R-BJ0p-afb-a-04-0-UI /FEA=EST /CNT=6 /TID=Rn.24409.1 /TIER=ConsEnd /STK=0 /UG=Rn.24409 /UG_TITLE=ESTs AW521250 1383476_at AW528065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528065 /DB_XREF=gi:7170479 /DB_XREF=UI-R-BT1-akh-c-08-0-UI.s1 /CLONE=UI-R-BT1-akh-c-08-0-UI /FEA=EST /CNT=6 /TID=Rn.6577.1 /TIER=ConsEnd /STK=0 /UG=Rn.6577 /UG_TITLE=ESTs AW528065 1383477_at BG668115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668115 /DB_XREF=gi:13890037 /DB_XREF=DRABVF10 /CLONE=DRABVF10 /FEA=EST /CNT=6 /TID=Rn.40424.1 /TIER=ConsEnd /STK=0 /UG=Rn.40424 /UG_TITLE=ESTs, Weakly similar to YP87_CAEEL HYPOTHETICAL 37.7 KD PROTEIN C08B11.7 IN CHROMOSOME II (C.elegans) BG668115 ubiquitin carboxyl-terminal hydrolase L5 Uchl5 360853 NM_001012149 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0016579 // protein deubiquitination // not recorded /// 0061136 // regulation of proteasomal protein catabolic process // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded /// 0031011 // Ino80 complex // not recorded 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0004866 // endopeptidase inhibitor activity // not recorded /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0070628 // proteasome binding // not recorded 1383478_at BG671504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671504 /DB_XREF=gi:13893603 /DB_XREF=DRNBTB01 /CLONE=DRNBTB01 /FEA=EST /CNT=6 /TID=Rn.15249.1 /TIER=ConsEnd /STK=0 /UG=Rn.15249 /UG_TITLE=ESTs BG671504 Janus kinase 1 Jak1 84598 NM_053466 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007167 // enzyme linked receptor protein signaling pathway // inferred from electronic annotation /// 0007167 // enzyme linked receptor protein signaling pathway // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0046677 // response to antibiotic // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005131 // growth hormone receptor binding // inferred from physical interaction /// 0005131 // growth hormone receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1383479_at BE109730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109730 /DB_XREF=gi:8501835 /DB_XREF=UI-R-BJ1-aup-e-01-0-UI.s1 /CLONE=UI-R-BJ1-aup-e-01-0-UI /FEA=EST /CNT=6 /TID=Rn.20724.1 /TIER=ConsEnd /STK=0 /UG=Rn.20724 /UG_TITLE=ESTs BE109730 1383480_at BI294850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294850 /DB_XREF=gi:14957706 /DB_XREF=UI-R-DK0-cec-h-05-0-UI.s1 /CLONE=UI-R-DK0-cec-h-05-0-UI /FEA=EST /CNT=6 /TID=Rn.37768.1 /TIER=ConsEnd /STK=0 /UG=Rn.37768 /UG_TITLE=ESTs BI294850 similar to Gene model 784 RGD1561693 501597 XR_085950 /// XR_086375 1383481_at AI070144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070144 /DB_XREF=gi:3396395 /DB_XREF=UI-R-Y0-lu-g-10-0-UI.s1 /CLONE=UI-R-Y0-lu-g-10-0-UI /FEA=EST /CNT=6 /TID=Rn.21257.1 /TIER=ConsEnd /STK=0 /UG=Rn.21257 /UG_TITLE=ESTs, Moderately similar to T00065 hypothetical protein KIAA0442 (H.sapiens) AI070144 autism susceptibility candidate 2-like LOC100362819 100362819 XM_002727960 1383482_at AI578183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578183 /DB_XREF=gi:4562559 /DB_XREF=UI-R-Y0-uw-f-12-0-UI.s2 /CLONE=UI-R-Y0-uw-f-12-0-UI /FEA=EST /CNT=6 /TID=Rn.23003.1 /TIER=ConsEnd /STK=0 /UG=Rn.23003 /UG_TITLE=ESTs AI578183 1383483_at BE106581 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106581 /DB_XREF=gi:8498683 /DB_XREF=UI-R-BO1-asp-f-06-0-UI.s1 /CLONE=UI-R-BO1-asp-f-06-0-UI /FEA=EST /CNT=6 /TID=Rn.43853.1 /TIER=ConsEnd /STK=0 /UG=Rn.43853 /UG_TITLE=ESTs BE106581 RAB9B, member RAS oncogene family Rab9b 367915 NM_001109018 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1383484_at AW920193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920193 /DB_XREF=gi:8085909 /DB_XREF=EST351406 /CLONE=RGIGQ89 /FEA=EST /CNT=6 /TID=Rn.25152.2 /TIER=ConsEnd /STK=0 /UG=Rn.25152 /UG_TITLE=ESTs AW920193 1383485_at BF548539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548539 /DB_XREF=gi:11639646 /DB_XREF=UI-R-A0-at-d-10-0-UI.r1 /CLONE=UI-R-A0-at-d-10-0-UI /FEA=EST /CNT=6 /TID=Rn.34960.1 /TIER=ConsEnd /STK=0 /UG=Rn.34960 /UG_TITLE=ESTs, Moderately similar to S15349 mdm2 protein - mouse (M.musculus) BF548539 Mdm2 p53 binding protein homolog (mouse) Mdm2 314856 NM_001108099 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006461 // protein complex assembly // not recorded /// 0007089 // traversing start control point of mitotic cell cycle // not recorded /// 0009636 // response to toxin // inferred from expression pattern /// 0009743 // response to carbohydrate stimulus // inferred from expression pattern /// 0010039 // response to iron ion // inferred from expression pattern /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0010629 // negative regulation of gene expression // inferred from mutant phenotype /// 0010955 // negative regulation of protein maturation by peptide bond cleavage // inferred from mutant phenotype /// 0016567 // protein ubiquitination // inferred from mutant phenotype /// 0016567 // protein ubiquitination // not recorded /// 0030163 // protein catabolic process // not recorded /// 0031648 // protein destabilization // not recorded /// 0032026 // response to magnesium ion // inferred from expression pattern /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0034504 // protein localization in nucleus // not recorded /// 0042176 // regulation of protein catabolic process // not recorded /// 0042220 // response to cocaine // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0043154 // negative regulation of caspase activity // inferred from mutant phenotype /// 0043278 // response to morphine // inferred from expression pattern /// 0043518 // negative regulation of DNA damage response, signal transduction by p53 class mediator // not recorded /// 0045184 // establishment of protein localization // not recorded /// 0045472 // response to ether // inferred from expression pattern /// 0045787 // positive regulation of cell cycle // not recorded /// 0045931 // positive regulation of mitotic cell cycle // not recorded /// 0046827 // positive regulation of protein export from nucleus // inferred from mutant phenotype /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0070301 // cellular response to hydrogen peroxide // inferred from expression pattern /// 0071157 // negative regulation of cell cycle arrest // inferred from electronic annotation /// 0071157 // negative regulation of cell cycle arrest // not recorded /// 0071229 // cellular response to acid // inferred from expression pattern /// 0071236 // cellular response to antibiotic // inferred from expression pattern /// 0071301 // cellular response to vitamin B1 // inferred from expression pattern /// 0071310 // cellular response to organic substance // inferred from expression pattern /// 0071312 // cellular response to alkaloid // inferred from expression pattern /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern /// 0071375 // cellular response to peptide hormone stimulus // inferred from expression pattern /// 0071391 // cellular response to estrogen stimulus // inferred from expression pattern /// 0071407 // cellular response to organic cyclic substance // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern /// 0071494 // cellular response to UV-C // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016604 // nuclear body // not recorded /// 0030666 // endocytic vesicle membrane // not recorded /// 0043234 // protein complex // not recorded /// 0045202 // synapse // inferred from direct assay 0002039 // p53 binding // inferred from physical interaction /// 0002039 // p53 binding // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from mutant phenotype /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0010843 // promoter binding // inferred from direct assay /// 0017163 // basal transcription repressor activity // not recorded /// 0019899 // enzyme binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042975 // peroxisome proliferator activated receptor binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1383486_at AA926109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926109 /DB_XREF=gi:4237300 /DB_XREF=UI-R-A1-eu-d-11-0-UI.s1 /CLONE=UI-R-A1-eu-d-11-0-UI /FEA=EST /CNT=6 /TID=Rn.35842.1 /TIER=ConsEnd /STK=0 /UG=Rn.35842 /UG_TITLE=ESTs AA926109 1383487_at AW530484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530484 /DB_XREF=gi:7172898 /DB_XREF=UI-R-C4-akx-f-06-0-UI.s1 /CLONE=UI-R-C4-akx-f-06-0-UI /FEA=EST /CNT=6 /TID=Rn.27162.2 /TIER=ConsEnd /STK=0 /UG=Rn.27162 /UG_TITLE=ESTs AW530484 1383488_at AA817785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817785 /DB_XREF=gi:4198312 /DB_XREF=UI-R-A0-ae-a-02-0-UI.s1 /CLONE=UI-R-A0-ae-a-02-0-UI /FEA=EST /CNT=6 /TID=Rn.16395.1 /TIER=ConsEnd /STK=0 /UG=Rn.16395 /UG_TITLE=ESTs AA817785 similar to Forkhead box protein F1 (Forkhead-related protein FKHL5) (Forkhead-related transcription factor 1) (FREAC-1) (Hepatocyte nuclear factor 3 forkhead homolog 8) (HFH-8) LOC687536 687536 XM_001079002 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1383489_at BG663025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663025 /DB_XREF=gi:13884947 /DB_XREF=DRA07C07 /CLONE=DRA07C07 /FEA=EST /CNT=6 /TID=Rn.56071.1 /TIER=ConsEnd /STK=0 /UG=Rn.56071 /UG_TITLE=ESTs BG663025 interleukin 6 signal transducer Il6st 25205 NM_001008725 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // not recorded /// 0006642 // triglyceride mobilization // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007259 // JAK-STAT cascade // inferred from mutant phenotype /// 0007584 // response to nutrient // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008593 // regulation of Notch signaling pathway // inferred from electronic annotation /// 0008593 // regulation of Notch signaling pathway // not recorded /// 0014911 // positive regulation of smooth muscle cell migration // inferred from mutant phenotype /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // traceable author statement /// 0034097 // response to cytokine stimulus // inferred from electronic annotation /// 0034097 // response to cytokine stimulus // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0042511 // positive regulation of tyrosine phosphorylation of Stat1 protein // inferred from electronic annotation /// 0042511 // positive regulation of tyrosine phosphorylation of Stat1 protein // not recorded /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // inferred from electronic annotation /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0046883 // regulation of hormone secretion // traceable author statement /// 0048711 // positive regulation of astrocyte differentiation // inferred from electronic annotation /// 0048711 // positive regulation of astrocyte differentiation // not recorded /// 0048861 // leukemia inhibitory factor signaling pathway // inferred from electronic annotation /// 0048861 // leukemia inhibitory factor signaling pathway // not recorded /// 0051481 // reduction of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0070104 // negative regulation of interleukin-6-mediated signaling pathway // inferred from electronic annotation /// 0070104 // negative regulation of interleukin-6-mediated signaling pathway // not recorded /// 0070106 // interleukin-27-mediated signaling pathway // inferred from electronic annotation /// 0070106 // interleukin-27-mediated signaling pathway // not recorded /// 0070120 // ciliary neurotrophic factor-mediated signaling pathway // inferred from electronic annotation /// 0070120 // ciliary neurotrophic factor-mediated signaling pathway // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005896 // interleukin-6 receptor complex // inferred from electronic annotation /// 0005896 // interleukin-6 receptor complex // not recorded /// 0005900 // oncostatin-M receptor complex // inferred from electronic annotation /// 0005900 // oncostatin-M receptor complex // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0070110 // ciliary neurotrophic factor receptor complex // inferred from electronic annotation /// 0070110 // ciliary neurotrophic factor receptor complex // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004897 // ciliary neurotrophic factor receptor activity // not recorded /// 0004897 // ciliary neurotrophic factor receptor activity // inferred from electronic annotation /// 0004915 // interleukin-6 receptor activity // inferred from electronic annotation /// 0004915 // interleukin-6 receptor activity // not recorded /// 0004921 // interleukin-11 receptor activity // inferred from electronic annotation /// 0004921 // interleukin-11 receptor activity // not recorded /// 0004923 // leukemia inhibitory factor receptor activity // inferred from electronic annotation /// 0004923 // leukemia inhibitory factor receptor activity // not recorded /// 0004924 // oncostatin-M receptor activity // inferred from electronic annotation /// 0004924 // oncostatin-M receptor activity // not recorded /// 0005125 // cytokine activity // traceable author statement /// 0005127 // ciliary neurotrophic factor receptor binding // inferred from electronic annotation /// 0005127 // ciliary neurotrophic factor receptor binding // not recorded /// 0005138 // interleukin-6 receptor binding // inferred from electronic annotation /// 0005138 // interleukin-6 receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded /// 0019838 // growth factor binding // inferred from electronic annotation /// 0019970 // interleukin-11 binding // not recorded /// 0019970 // interleukin-11 binding // inferred from electronic annotation /// 0019981 // interleukin-6 binding // not recorded /// 0019981 // interleukin-6 binding // inferred from electronic annotation 1383490_at AA943025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943025 /DB_XREF=gi:3102941 /DB_XREF=EST198524 /CLONE=RBRAD86 /FEA=EST /CNT=6 /TID=Rn.22958.1 /TIER=ConsEnd /STK=0 /UG=Rn.22958 /UG_TITLE=ESTs AA943025 similar to Protein UNQ9166/PRO28631 precursor RGD1563996 315163 XM_001077526 /// XM_235511 1383491_at BM391709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391709 /DB_XREF=gi:18191762 /DB_XREF=UI-R-CN1-cjs-l-24-0-UI.s1 /CLONE=UI-R-CN1-cjs-l-24-0-UI /FEA=EST /CNT=6 /TID=Rn.46887.1 /TIER=ConsEnd /STK=0 /UG=Rn.46887 /UG_TITLE=ESTs, Weakly similar to interferon induced (H.sapiens) BM391709 apoptosis enhancing nuclease Aen 361594 NM_001108487 0006915 // apoptosis // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010212 // response to ionizing radiation // not recorded /// 0010212 // response to ionizing radiation // inferred from sequence or structural similarity /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005654 // nucleoplasm // inferred from sequence or structural similarity /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // not recorded /// 0004527 // exonuclease activity // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation 1383492_at BF397956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397956 /DB_XREF=gi:11382941 /DB_XREF=UI-R-BS2-bef-f-02-0-UI.s1 /CLONE=UI-R-BS2-bef-f-02-0-UI /FEA=EST /CNT=6 /TID=Rn.11456.1 /TIER=ConsEnd /STK=0 /UG=Rn.11456 /UG_TITLE=ESTs BF397956 homeo box D9 Hoxd9 688999 NM_001173469 /// XM_002726192 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0008344 // adult locomotory behavior // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009954 // proximal/distal pattern formation // not recorded /// 0030879 // mammary gland development // not recorded /// 0035115 // embryonic forelimb morphogenesis // not recorded /// 0035136 // forelimb morphogenesis // not recorded /// 0035137 // hindlimb morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048706 // embryonic skeletal system development // not recorded /// 0048935 // peripheral nervous system neuron development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1383493_at BE102202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102202 /DB_XREF=gi:8494301 /DB_XREF=UI-R-BT1-aqf-f-11-0-UI.s1 /CLONE=UI-R-BT1-aqf-f-11-0-UI /FEA=EST /CNT=6 /TID=Rn.7923.1 /TIER=ConsEnd /STK=0 /UG=Rn.7923 /UG_TITLE=ESTs BE102202 1383494_at BF414338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414338 /DB_XREF=gi:11402292 /DB_XREF=UI-R-BJ2-boo-h-03-0-UI.s1 /CLONE=UI-R-BJ2-boo-h-03-0-UI /FEA=EST /CNT=6 /TID=Rn.16328.1 /TIER=ConsEnd /STK=0 /UG=Rn.16328 /UG_TITLE=ESTs BF414338 S1 RNA binding domain 1 Srbd1 301665 XM_001059624 /// XM_237474 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation 1383495_at AI556858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556858 /DB_XREF=gi:4489221 /DB_XREF=UI-R-C2p-ro-a-11-0-UI.s1 /CLONE=UI-R-C2p-ro-a-11-0-UI /FEA=EST /CNT=6 /TID=Rn.7714.1 /TIER=ConsEnd /STK=0 /UG=Rn.7714 /UG_TITLE=ESTs AI556858 DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae) Dclre1a 292127 NM_001106201 0006289 // nucleotide-excision repair // not recorded 0016787 // hydrolase activity // inferred from electronic annotation 1383496_at BM387466 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387466 /DB_XREF=gi:18187519 /DB_XREF=UI-R-CN1-cjj-i-08-0-UI.s1 /CLONE=UI-R-CN1-cjj-i-08-0-UI /FEA=EST /CNT=6 /TID=Rn.12415.1 /TIER=ConsEnd /STK=0 /UG=Rn.12415 /UG_TITLE=ESTs BM387466 similar to hypothetical protein FLJ20171 RGD1560481 500409 NM_001127564 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0043484 // regulation of RNA splicing // inferred from sequence or structural similarity /// 0043484 // regulation of RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from sequence or structural similarity /// 0003729 // mRNA binding // inferred from electronic annotation 1383497_at AA997772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997772 /DB_XREF=gi:4285178 /DB_XREF=UI-R-C0-hv-b-09-0-UI.s1 /CLONE=UI-R-C0-hv-b-09-0-UI /FEA=EST /CNT=6 /TID=Rn.12764.1 /TIER=ConsEnd /STK=0 /UG=Rn.12764 /UG_TITLE=ESTs AA997772 1383498_at BG373354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373354 /DB_XREF=gi:13269891 /DB_XREF=UI-R-CV1-brx-g-08-0-UI.s1 /CLONE=UI-R-CV1-brx-g-08-0-UI /FEA=EST /CNT=6 /TID=Rn.43744.1 /TIER=ConsEnd /STK=0 /UG=Rn.43744 /UG_TITLE=ESTs BG373354 1383499_at BG371995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371995 /DB_XREF=gi:13268532 /DB_XREF=UI-R-CV0-brl-a-03-0-UI.s1 /CLONE=UI-R-CV0-brl-a-03-0-UI /FEA=EST /CNT=6 /TID=Rn.14698.1 /TIER=ConsEnd /STK=0 /UG=Rn.14698 /UG_TITLE=ESTs BG371995 adhesion molecule with Ig like domain 1 Amigo1 295365 NM_206881 0007155 // cell adhesion // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from physical interaction /// 0007157 // heterophilic cell-cell adhesion // inferred from physical interaction /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from direct assay /// 0007413 // axonal fasciculation // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042552 // myelination // inferred from expression pattern /// 0050772 // positive regulation of axonogenesis // inferred from direct assay 0005887 // integral to plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1383500_at BI279795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279795 /DB_XREF=gi:14927955 /DB_XREF=UI-R-CU0s-cbr-a-04-0-UI.s1 /CLONE=UI-R-CU0s-cbr-a-04-0-UI /FEA=EST /CNT=6 /TID=Rn.14684.1 /TIER=ConsEnd /STK=0 /UG=Rn.14684 /UG_TITLE=ESTs BI279795 ribosome binding protein 1 Rrbp1 311483 XM_001053669 /// XM_230637 0015031 // protein transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // not recorded /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation 1383501_at AI059858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059858 /DB_XREF=gi:3333635 /DB_XREF=UI-R-C1-kr-g-11-0-UI.s1 /CLONE=UI-R-C1-kr-g-11-0-UI /FEA=EST /CNT=6 /TID=Rn.19471.1 /TIER=ConsEnd /STK=0 /UG=Rn.19471 /UG_TITLE=ESTs AI059858 1383502_at BE113753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113753 /DB_XREF=gi:8505858 /DB_XREF=UI-R-BJ1-awh-a-08-0-UI.s1 /CLONE=UI-R-BJ1-awh-a-08-0-UI /FEA=EST /CNT=6 /TID=Rn.19168.1 /TIER=ConsEnd /STK=0 /UG=Rn.19168 /UG_TITLE=ESTs BE113753 topoisomerase (DNA) II binding protein 1 Topbp1 315969 XM_001072207 /// XM_236578 0006974 // response to DNA damage stimulus // not recorded /// 0010212 // response to ionizing radiation // not recorded 0000794 // condensed nuclear chromosome // not recorded /// 0001673 // male germ cell nucleus // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0016605 // PML body // not recorded 0005515 // protein binding // not recorded 1383503_at AI102821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102821 /DB_XREF=gi:4134122 /DB_XREF=EST212110 /CLONE=REMBT30 /FEA=EST /CNT=6 /TID=Rn.24498.1 /TIER=ConsEnd /STK=0 /UG=Rn.24498 /UG_TITLE=ESTs AI102821 1383504_at AW530604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530604 /DB_XREF=gi:7173018 /DB_XREF=UI-R-C4-ala-b-10-0-UI.s1 /CLONE=UI-R-C4-ala-b-10-0-UI /FEA=EST /CNT=6 /TID=Rn.23021.1 /TIER=ConsEnd /STK=0 /UG=Rn.23021 /UG_TITLE=ESTs AW530604 cleavage and polyadenylation specific factor 6 Cpsf6 299811 NM_001106785 0006397 // mRNA processing // not recorded 0005849 // mRNA cleavage factor complex // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0042382 // paraspeckles // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // not recorded 1383505_at BI277767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277767 /DB_XREF=gi:14923958 /DB_XREF=UI-R-CZ0-byb-c-09-0-UI.s1 /CLONE=UI-R-CZ0-byb-c-09-0-UI /FEA=EST /CNT=6 /TID=Rn.25271.1 /TIER=ConsEnd /STK=0 /UG=Rn.25271 /UG_TITLE=ESTs BI277767 1383506_at AW254062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254062 /DB_XREF=gi:6597653 /DB_XREF=UI-R-BJ0-aeo-g-02-0-UI.s1 /CLONE=UI-R-BJ0-aeo-g-02-0-UI /FEA=EST /CNT=6 /TID=Rn.16729.1 /TIER=ConsEnd /STK=0 /UG=Rn.16729 /UG_TITLE=ESTs AW254062 B-cell CLL/lymphoma 11A (zinc finger protein) Bcl11a 305589 NM_001191683 /// XM_001057813 /// XM_002725017 /// XM_002728129 /// XM_223693 0016481 // negative regulation of transcription // not recorded /// 0030183 // B cell differentiation // not recorded /// 0030217 // T cell differentiation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1383507_at AI045091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045091 /DB_XREF=gi:3291910 /DB_XREF=UI-R-C1-kf-g-08-0-UI.s1 /CLONE=UI-R-C1-kf-g-08-0-UI /FEA=EST /CNT=6 /TID=Rn.17938.1 /TIER=ConsEnd /STK=0 /UG=Rn.17938 /UG_TITLE=ESTs AI045091 1383508_at AW528853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528853 /DB_XREF=gi:7171267 /DB_XREF=UI-R-BT1-akj-d-04-0-UI.s1 /CLONE=UI-R-BT1-akj-d-04-0-UI /FEA=EST /CNT=6 /TID=Rn.17741.1 /TIER=ConsEnd /STK=0 /UG=Rn.17741 /UG_TITLE=ESTs AW528853 similar to hypothetical protein FLJ12661 RGD1309403 310417 NM_001107676 1383509_at BF551003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551003 /DB_XREF=gi:11660733 /DB_XREF=UI-R-C0-je-b-10-0-UI.r2 /CLONE=UI-R-C0-je-b-10-0-UI /FEA=EST /CNT=6 /TID=Rn.18649.1 /TIER=ConsEnd /STK=0 /UG=Rn.18649 /UG_TITLE=ESTs BF551003 1383510_at AI230360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230360 /DB_XREF=gi:3814247 /DB_XREF=EST227055 /CLONE=REMCV57 /FEA=EST /CNT=5 /TID=Rn.249.1 /TIER=ConsEnd /STK=0 /UG=Rn.249 /UG_TITLE=ESTs AI230360 1383511_at BF409024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409024 /DB_XREF=gi:11396999 /DB_XREF=UI-R-BT1-bkl-b-04-0-UI.s1 /CLONE=UI-R-BT1-bkl-b-04-0-UI /FEA=EST /CNT=5 /TID=Rn.24826.1 /TIER=ConsEnd /STK=0 /UG=Rn.24826 /UG_TITLE=ESTs BF409024 1383512_at AW918674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918674 /DB_XREF=gi:8084456 /DB_XREF=EST349978 /CLONE=RGIEW33 /FEA=EST /CNT=5 /TID=Rn.22850.1 /TIER=ConsEnd /STK=0 /UG=Rn.22850 /UG_TITLE=ESTs AW918674 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 Mllt10 361285 NM_001012162 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1383513_at AA899227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899227 /DB_XREF=gi:4231724 /DB_XREF=UI-R-E0-bp-h-10-0-UI.s2 /CLONE=UI-R-E0-bp-h-10-0-UI /FEA=EST /CNT=5 /TID=Rn.14910.1 /TIER=ConsEnd /STK=0 /UG=Rn.14910 /UG_TITLE=ESTs AA899227 1383514_s_at BG671648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671648 /DB_XREF=gi:13893747 /DB_XREF=DRNBWA09 /CLONE=DRNBWA09 /FEA=EST /CNT=5 /TID=Rn.8207.1 /TIER=ConsEnd /STK=0 /UG=Rn.8207 /UG_TITLE=ESTs BG671648 NMDA receptor regulated 1 Narg1 310399 NM_001107674 0006474 // N-terminal protein amino acid acetylation // not recorded /// 0008152 // metabolic process // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008080 // N-acetyltransferase activity // not recorded /// 0016407 // acetyltransferase activity // not recorded /// 0043022 // ribosome binding // not recorded 1383515_at AW143503 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143503 /DB_XREF=gi:6163311 /DB_XREF=EST293708 /CLONE=RGIBP11 /FEA=EST /CNT=5 /TID=Rn.13077.1 /TIER=ConsEnd /STK=0 /UG=Rn.13077 /UG_TITLE=ESTs AW143503 ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) Ube2k 289623 NM_001106006 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0034450 // ubiquitin-ubiquitin ligase activity // not recorded 1383516_at BG663284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663284 /DB_XREF=gi:13885206 /DB_XREF=DRAAAGB10 /CLONE=DRAAAGB10 /FEA=EST /CNT=5 /TID=Rn.20323.2 /TIER=ConsEnd /STK=0 /UG=Rn.20323 /UG_TITLE=ESTs BG663284 fibrinogen-like 2 Fgl2 84586 NM_053455 0007165 // signal transduction // inferred from electronic annotation /// 0007567 // parturition // traceable author statement 0005615 // extracellular space // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0008233 // peptidase activity // traceable author statement 1383517_at AA998001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998001 /DB_XREF=gi:4286822 /DB_XREF=UI-R-C0-hu-h-03-0-UI.s1 /CLONE=UI-R-C0-hu-h-03-0-UI /FEA=EST /CNT=5 /TID=Rn.21227.1 /TIER=ConsEnd /STK=0 /UG=Rn.21227 /UG_TITLE=ESTs AA998001 1383518_at AI137914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137914 /DB_XREF=gi:3638691 /DB_XREF=UI-R-A1-dp-h-12-0-UI.s1 /CLONE=UI-R-A1-dp-h-12-0-UI /FEA=EST /CNT=5 /TID=Rn.21377.1 /TIER=ConsEnd /STK=0 /UG=Rn.21377 /UG_TITLE=ESTs AI137914 1383519_at BI294137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294137 /DB_XREF=gi:14956307 /DB_XREF=UI-R-DK0-cej-h-01-0-UI.s1 /CLONE=UI-R-DK0-cej-h-01-0-UI /FEA=EST /CNT=5 /TID=Rn.43381.1 /TIER=ConsEnd /STK=0 /UG=Rn.43381 /UG_TITLE=ESTs BI294137 Hexokinase 2 Hk2 25059 NM_012735 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006007 // glucose catabolic process // traceable author statement /// 0006096 // glycolysis // inferred from electronic annotation /// 0007595 // lactation // inferred from expression pattern /// 0046835 // carbohydrate phosphorylation // inferred from direct assay /// 0046835 // carbohydrate phosphorylation // not recorded /// 0046835 // carbohydrate phosphorylation // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004396 // hexokinase activity // inferred from direct assay /// 0004396 // hexokinase activity // not recorded /// 0004396 // hexokinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005536 // glucose binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1383520_at AA859127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859127 /DB_XREF=gi:4229395 /DB_XREF=UI-R-A0-ac-d-12-0-UI.s2 /CLONE=UI-R-A0-ac-d-12-0-UI /FEA=EST /CNT=5 /TID=Rn.16967.1 /TIER=ConsEnd /STK=0 /UG=Rn.16967 /UG_TITLE=ESTs AA859127 1383521_at AW915081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915081 /DB_XREF=gi:8080780 /DB_XREF=EST346398 /CLONE=RGICJ38 /FEA=EST /CNT=5 /TID=Rn.12331.1 /TIER=ConsEnd /STK=0 /UG=Rn.12331 /UG_TITLE=ESTs AW915081 1383522_at AI045086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045086 /DB_XREF=gi:3291905 /DB_XREF=UI-R-C1-kf-f-09-0-UI.s1 /CLONE=UI-R-C1-kf-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.17286.1 /TIER=ConsEnd /STK=0 /UG=Rn.17286 /UG_TITLE=ESTs AI045086 1383523_at BE110369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110369 /DB_XREF=gi:8502474 /DB_XREF=UI-R-BJ1-aun-b-10-0-UI.s1 /CLONE=UI-R-BJ1-aun-b-10-0-UI /FEA=EST /CNT=5 /TID=Rn.20056.2 /TIER=ConsEnd /STK=0 /UG=Rn.20056 /UG_TITLE=ESTs BE110369 rho/rac guanine nucleotide exchange factor (GEF) 18 Arhgef18 304193 NM_001107115 0006915 // apoptosis // not recorded /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0008360 // regulation of cell shape // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0030036 // actin cytoskeleton organization // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1383524_at AA955352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955352 /DB_XREF=gi:4237708 /DB_XREF=UI-R-A1-ey-b-03-0-UI.s1 /CLONE=UI-R-A1-ey-b-03-0-UI /FEA=EST /CNT=5 /TID=Rn.4172.1 /TIER=ConsEnd /STK=0 /UG=Rn.4172 /UG_TITLE=ESTs AA955352 1383525_at AW918717 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918717 /DB_XREF=gi:8084500 /DB_XREF=EST350021 /CLONE=RGIEX01 /FEA=EST /CNT=5 /TID=Rn.23768.1 /TIER=ConsEnd /STK=0 /UG=Rn.23768 /UG_TITLE=ESTs AW918717 1383526_at AA957027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957027 /DB_XREF=gi:4239500 /DB_XREF=UI-R-E1-fs-e-07-0-UI.s1 /CLONE=UI-R-E1-fs-e-07-0-UI /FEA=EST /CNT=5 /TID=Rn.23144.1 /TIER=ConsEnd /STK=0 /UG=Rn.23144 /UG_TITLE=ESTs AA957027 1383527_at BF418522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418522 /DB_XREF=gi:11406511 /DB_XREF=UI-R-BJ2-bqg-g-12-0-UI.s1 /CLONE=UI-R-BJ2-bqg-g-12-0-UI /FEA=EST /CNT=5 /TID=Rn.17773.1 /TIER=ConsEnd /STK=0 /UG=Rn.17773 /UG_TITLE=ESTs BF418522 1383528_at BI276223 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276223 /DB_XREF=gi:14920928 /DB_XREF=UI-R-CX0-bxf-e-06-0-UI.s1 /CLONE=UI-R-CX0-bxf-e-06-0-UI /FEA=EST /CNT=5 /TID=Rn.29348.1 /TIER=ConsEnd /STK=0 /UG=Rn.29348 /UG_TITLE=ESTs BI276223 Similar to mKIAA0215 protein RGD1563945 299305 XM_001056752 /// XM_234528 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1383529_at BF549256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549256 /DB_XREF=gi:11640363 /DB_XREF=UI-R-A0-ah-f-12-0-UI.r1 /CLONE=UI-R-A0-ah-f-12-0-UI /FEA=EST /CNT=5 /TID=Rn.19351.2 /TIER=ConsEnd /STK=0 /UG=Rn.19351 /UG_TITLE=ESTs BF549256 1383530_at AA925994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925994 /DB_XREF=gi:4237185 /DB_XREF=UI-R-A1-es-b-03-0-UI.s1 /CLONE=UI-R-A1-es-b-03-0-UI /FEA=EST /CNT=5 /TID=Rn.15635.1 /TIER=ConsEnd /STK=0 /UG=Rn.15635 /UG_TITLE=ESTs AA925994 nuclear receptor interacting protein 3 Nrip3 361625 NM_001108498 0006508 // proteolysis // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383531_at AA901061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901061 /DB_XREF=gi:4233559 /DB_XREF=UI-R-A1-dv-f-11-0-UI.s1 /CLONE=UI-R-A1-dv-f-11-0-UI /FEA=EST /CNT=5 /TID=Rn.15177.1 /TIER=ConsEnd /STK=0 /UG=Rn.15177 /UG_TITLE=ESTs AA901061 1383532_at AA956411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956411 /DB_XREF=gi:4238885 /DB_XREF=UI-R-E1-fj-e-10-0-UI.s1 /CLONE=UI-R-E1-fj-e-10-0-UI /FEA=EST /CNT=5 /TID=Rn.8976.1 /TIER=ConsEnd /STK=0 /UG=Rn.8976 /UG_TITLE=ESTs AA956411 1383533_at AI715743 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715743 /DB_XREF=gi:5032996 /DB_XREF=UI-R-Y0-abt-e-07-0-UI.s1 /CLONE=UI-R-Y0-abt-e-07-0-UI /FEA=EST /CNT=5 /TID=Rn.15617.1 /TIER=ConsEnd /STK=0 /UG=Rn.15617 /UG_TITLE=ESTs AI715743 1383534_at AA997058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997058 /DB_XREF=gi:4280821 /DB_XREF=UI-R-C0-hk-d-01-0-UI.s1 /CLONE=UI-R-C0-hk-d-01-0-UI /FEA=EST /CNT=5 /TID=Rn.20948.2 /TIER=ConsEnd /STK=0 /UG=Rn.20948 /UG_TITLE=ESTs AA997058 1383535_at BF549472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549472 /DB_XREF=gi:11659244 /DB_XREF=UI-R-C2-mv-d-09-0-UI.r1 /CLONE=UI-R-C2-mv-d-09-0-UI /FEA=EST /CNT=5 /TID=Rn.40777.2 /TIER=ConsEnd /STK=0 /UG=Rn.40777 /UG_TITLE=ESTs, Weakly similar to PA26 RAT 85 KDA CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 (R.norvegicus) BF549472 ankyrin repeat and SOCS box-containing 8 Asb8 315287 NM_001108109 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1383536_at AI712541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712541 /DB_XREF=gi:5016341 /DB_XREF=UI-R-AF1-aap-f-12-0-UI.s1 /CLONE=UI-R-AF1-aap-f-12-0-UI /FEA=EST /CNT=5 /TID=Rn.24681.1 /TIER=ConsEnd /STK=0 /UG=Rn.24681 /UG_TITLE=ESTs AI712541 dihydrofolate reductase Dhfr 24312 NM_130400 0006545 // glycine biosynthetic process // inferred from electronic annotation /// 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0009165 // nucleotide biosynthetic process // inferred from electronic annotation /// 0031427 // response to methotrexate // inferred from electronic annotation /// 0035094 // response to nicotine // inferred from expression pattern /// 0046452 // dihydrofolate metabolic process // inferred from direct assay /// 0046653 // tetrahydrofolate metabolic process // not recorded /// 0046653 // tetrahydrofolate metabolic process // inferred from sequence or structural similarity /// 0046654 // tetrahydrofolate biosynthetic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay 0004146 // dihydrofolate reductase activity // inferred from direct assay /// 0004146 // dihydrofolate reductase activity // inferred from mutant phenotype /// 0004146 // dihydrofolate reductase activity // not recorded /// 0004146 // dihydrofolate reductase activity // inferred from sequence or structural similarity /// 0004146 // dihydrofolate reductase activity // inferred from electronic annotation /// 0008144 // drug binding // not recorded /// 0008144 // drug binding // inferred from sequence or structural similarity /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from direct assay /// 0050661 // NADP or NADPH binding // inferred from electronic annotation /// 0051871 // dihydrofolic acid binding // inferred from direct assay 1383537_at BF522715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522715 /DB_XREF=gi:11630682 /DB_XREF=UI-R-G0-uu-d-08-0-UI.r1 /CLONE=UI-R-G0-uu-d-08-0-UI /FEA=EST /CNT=5 /TID=Rn.23175.1 /TIER=ConsEnd /STK=0 /UG=Rn.23175 /UG_TITLE=ESTs BF522715 Vascular endothelial zinc finger 1 Vezf1 287615 XM_001081191 /// XM_213421 0001525 // angiogenesis // not recorded /// 0001885 // endothelial cell development // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1383538_at BF545850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545850 /DB_XREF=gi:11636957 /DB_XREF=UI-R-BT0-qe-a-08-0-UI.r1 /CLONE=UI-R-BT0-qe-a-08-0-UI /FEA=EST /CNT=5 /TID=Rn.29893.1 /TIER=ConsEnd /STK=0 /UG=Rn.29893 /UG_TITLE=ESTs BF545850 1383539_at BG665568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665568 /DB_XREF=gi:13887490 /DB_XREF=DRACEG09 /CLONE=DRACEG09 /FEA=EST /CNT=5 /TID=Rn.6320.1 /TIER=ConsEnd /STK=0 /UG=Rn.6320 /UG_TITLE=ESTs BG665568 1383540_at BF551093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551093 /DB_XREF=gi:11660823 /DB_XREF=UI-R-C0-ij-h-08-0-UI.r1 /CLONE=UI-R-C0-ij-h-08-0-UI /FEA=EST /CNT=5 /TID=Rn.6736.1 /TIER=ConsEnd /STK=0 /UG=Rn.6736 /UG_TITLE=ESTs BF551093 1383541_at BE114815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114815 /DB_XREF=gi:8506920 /DB_XREF=UI-R-BJ1-awp-f-06-0-UI.s1 /CLONE=UI-R-BJ1-awp-f-06-0-UI /FEA=EST /CNT=5 /TID=Rn.27072.1 /TIER=ConsEnd /STK=0 /UG=Rn.27072 /UG_TITLE=ESTs BE114815 N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase Nagpa 360476 NM_001108265 1383542_at BI282819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282819 /DB_XREF=gi:14933962 /DB_XREF=UI-R-DA0-byp-f-04-0-UI.s1 /CLONE=UI-R-DA0-byp-f-04-0-UI /FEA=EST /CNT=5 /TID=Rn.32156.1 /TIER=ConsEnd /STK=0 /UG=Rn.32156 /UG_TITLE=ESTs BI282819 1383543_at AW918220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918220 /DB_XREF=gi:8083991 /DB_XREF=EST349524 /CLONE=RGIEO02 /FEA=EST /CNT=5 /TID=Rn.21367.1 /TIER=ConsEnd /STK=0 /UG=Rn.21367 /UG_TITLE=ESTs, Moderately similar to T46908 hypothetical protein DKFZp761G2423.1 (H.sapiens) AW918220 golgi transport 1 homolog B (S. cerevisiae) Golt1b 362460 NM_001113783 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded 1383544_at AI385372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385372 /DB_XREF=gi:4198154 /DB_XREF=UI-R-C2-mu-g-08-0-UI.s2 /CLONE=UI-R-C2-mu-g-08-0-UI /FEA=EST /CNT=5 /TID=Rn.32047.1 /TIER=ConsEnd /STK=0 /UG=Rn.32047 /UG_TITLE=ESTs AI385372 FCH and double SH3 domains 1 Fchsd1 307482 NM_001107392 /// NM_001109881 1383545_at BF562608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562608 /DB_XREF=gi:11672338 /DB_XREF=UI-R-BS0-anv-d-03-0-UI.r1 /CLONE=UI-R-BS0-anv-d-03-0-UI /FEA=EST /CNT=5 /TID=Rn.25550.1 /TIER=ConsEnd /STK=0 /UG=Rn.25550 /UG_TITLE=ESTs BF562608 1383546_at BE097393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097393 /DB_XREF=gi:8488324 /DB_XREF=UI-R-BO1-apq-h-12-0-UI.s1 /CLONE=UI-R-BO1-apq-h-12-0-UI /FEA=EST /CNT=5 /TID=Rn.26777.1 /TIER=ConsEnd /STK=0 /UG=Rn.26777 /UG_TITLE=ESTs BE097393 glycerophosphodiester phosphodiesterase domain containing 2 Gdpd2 302421 NM_001106944 0006071 // glycerol metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0008889 // glycerophosphodiester phosphodiesterase activity // inferred from electronic annotation 1383547_at AI137593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137593 /DB_XREF=gi:3638370 /DB_XREF=UI-R-C0-ho-a-06-0-UI.s1 /CLONE=UI-R-C0-ho-a-06-0-UI /FEA=EST /CNT=5 /TID=Rn.27463.1 /TIER=ConsEnd /STK=0 /UG=Rn.27463 /UG_TITLE=ESTs AI137593 patatin-like phospholipase domain containing 6 Pnpla6 360753 XM_001057249 /// XM_341025 0001525 // angiogenesis // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0046470 // phosphatidylcholine metabolic process // inferred from electronic annotation 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation 0004622 // lysophospholipase activity // inferred from electronic annotation 1383548_at BI290887 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290887 /DB_XREF=gi:14949896 /DB_XREF=UI-R-DK0-cgi-f-11-0-UI.s1 /CLONE=UI-R-DK0-cgi-f-11-0-UI /FEA=EST /CNT=5 /TID=Rn.15268.1 /TIER=ConsEnd /STK=0 /UG=Rn.15268 /UG_TITLE=ESTs BI290887 ankyrin repeat domain 49 Ankrd49 315434 NM_001126283 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded 1383549_at AW533221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533221 /DB_XREF=gi:7175635 /DB_XREF=UI-R-BU0-ana-c-03-0-UI.s1 /CLONE=UI-R-BU0-ana-c-03-0-UI /FEA=EST /CNT=5 /TID=Rn.24927.1 /TIER=ConsEnd /STK=0 /UG=Rn.24927 /UG_TITLE=ESTs AW533221 similar to RIKEN cDNA C030048B08 RGD1310794 296840 NM_001024246 0000166 // nucleotide binding // inferred from electronic annotation 1383550_at BE100805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100805 /DB_XREF=gi:8492703 /DB_XREF=UI-R-BJ1-auf-e-09-0-UI.s1 /CLONE=UI-R-BJ1-auf-e-09-0-UI /FEA=EST /CNT=5 /TID=Rn.18187.1 /TIER=ConsEnd /STK=0 /UG=Rn.18187 /UG_TITLE=ESTs, Weakly similar to BTD_HUMAN BIOTINIDASE PRECURSOR {SUB 21-543 (H.sapiens) BE100805 biotinidase Btd 306262 NM_001012047 0006807 // nitrogen compound metabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0043204 // perikaryon // inferred from electronic annotation /// 0043204 // perikaryon // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded 0016787 // hydrolase activity // inferred from electronic annotation /// 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation /// 0016811 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides // inferred from electronic annotation /// 0047708 // biotinidase activity // inferred from electronic annotation 1383551_at AW144812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144812 /DB_XREF=gi:6161652 /DB_XREF=EST291908 /CLONE=RGICI01 /FEA=EST /CNT=5 /TID=Rn.44981.1 /TIER=ConsEnd /STK=0 /UG=Rn.44981 /UG_TITLE=ESTs, Weakly similar to JC1132 phosphoglycerate mutase (R.norvegicus) AW144812 2,3-bisphosphoglycerate mutase Bpgm 296973 NM_199382 0006096 // glycolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0048821 // erythrocyte development // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0016868 // intramolecular transferase activity, phosphotransferases // inferred from electronic annotation /// 0046538 // 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity // inferred from electronic annotation 1383552_at AI071698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071698 /DB_XREF=gi:3397913 /DB_XREF=UI-R-C2-nc-b-11-0-UI.s1 /CLONE=UI-R-C2-nc-b-11-0-UI /FEA=EST /CNT=5 /TID=Rn.21974.1 /TIER=ConsEnd /STK=0 /UG=Rn.21974 /UG_TITLE=ESTs AI071698 1383553_at BE097591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097591 /DB_XREF=gi:8488522 /DB_XREF=UI-R-BO1-apz-d-07-0-UI.s1 /CLONE=UI-R-BO1-apz-d-07-0-UI /FEA=EST /CNT=5 /TID=Rn.12444.1 /TIER=ConsEnd /STK=0 /UG=Rn.12444 /UG_TITLE=ESTs BE097591 NLR family member X1 Nlrx1 315599 NM_001025010 0044419 // interspecies interaction between organisms // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1383554_at AW142796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142796 /DB_XREF=gi:6162695 /DB_XREF=EST293049 /CLONE=RGIAV85 /FEA=EST /CNT=5 /TID=Rn.79657.1 /TIER=ConsEnd /STK=0 /UG=Rn.79657 /UG_TITLE=ESTs AW142796 ring finger protein 128 Rnf128 315911 NM_001173349 /// XM_001054034 /// XM_236533 0016567 // protein ubiquitination // not recorded /// 0042036 // negative regulation of cytokine biosynthetic process // inferred from electronic annotation /// 0042036 // negative regulation of cytokine biosynthetic process // not recorded 0005770 // late endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383555_at AW525704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525704 /DB_XREF=gi:7168089 /DB_XREF=UI-R-BJ0p-aiu-h-05-0-UI.s1 /CLONE=UI-R-BJ0p-aiu-h-05-0-UI /FEA=EST /CNT=5 /TID=Rn.11645.1 /TIER=ConsEnd /STK=0 /UG=Rn.11645 /UG_TITLE=ESTs, Weakly similar to P8_HUMAN P8 PROTEIN (H.sapiens) AW525704 similar to RIKEN cDNA 4930579G22 RGD1560258 360799 NM_001134570 1383556_at AI575798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575798 /DB_XREF=gi:4560174 /DB_XREF=UI-R-Y0-uy-a-09-0-UI.s1 /CLONE=UI-R-Y0-uy-a-09-0-UI /FEA=EST /CNT=5 /TID=Rn.23397.1 /TIER=ConsEnd /STK=0 /UG=Rn.23397 /UG_TITLE=ESTs AI575798 DENN/MADD domain containing 2C Dennd2c 295333 NM_001191569 /// XM_001067655 /// XM_002726030 /// XM_002729114 1383557_at BG665587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665587 /DB_XREF=gi:13887509 /DB_XREF=DRACFB03 /CLONE=DRACFB03 /FEA=EST /CNT=5 /TID=Rn.51471.1 /TIER=ConsEnd /STK=0 /UG=Rn.51471 /UG_TITLE=ESTs BG665587 1383558_at BI290282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290282 /DB_XREF=gi:14948708 /DB_XREF=UI-R-DK0-cfu-d-07-0-UI.s1 /CLONE=UI-R-DK0-cfu-d-07-0-UI /FEA=EST /CNT=5 /TID=Rn.11965.1 /TIER=ConsEnd /STK=0 /UG=Rn.11965 /UG_TITLE=ESTs BI290282 eukaryotic elongation factor, selenocysteine-tRNA-specific Eefsec 500255 NM_001109249 0001514 // selenocysteine incorporation // not recorded /// 0001514 // selenocysteine incorporation // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0000049 // tRNA binding // not recorded /// 0000049 // tRNA binding // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded 1383559_at AI144819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144819 /DB_XREF=gi:3666618 /DB_XREF=UI-R-BT0-pm-c-03-0-UI.s1 /CLONE=UI-R-BT0-pm-c-03-0-UI /FEA=EST /CNT=5 /TID=Rn.27695.1 /TIER=ConsEnd /STK=0 /UG=Rn.27695 /UG_TITLE=ESTs, Weakly similar to HE47 RAT PROBABLE ATP-DEPENDENT RNA HELICASE P47 (R.norvegicus) AI144819 DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a /// DEAD (Asp-Glu-Ala-As) box polypeptide 19B Ddx19a /// Ddx19b 292022 /// 690693 NM_001005381 /// NM_001005895 /// XM_001075251 /// XM_002725392 0006917 // induction of apoptosis // inferred from mutant phenotype /// 0010043 // response to zinc ion // inferred from expression pattern 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1383560_at BI303213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303213 /DB_XREF=gi:14979493 /DB_XREF=UI-R-DQ0-ciz-m-18-0-UI.s1 /CLONE=UI-R-DQ0-ciz-m-18-0-UI /FEA=EST /CNT=5 /TID=Rn.20177.1 /TIER=ConsEnd /STK=0 /UG=Rn.20177 /UG_TITLE=ESTs BI303213 1383561_at BF550555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550555 /DB_XREF=gi:11660285 /DB_XREF=UI-R-C0-jj-h-03-0-UI.r1 /CLONE=UI-R-C0-jj-h-03-0-UI /FEA=EST /CNT=5 /TID=Rn.43328.1 /TIER=ConsEnd /STK=0 /UG=Rn.43328 /UG_TITLE=ESTs BF550555 1383562_at AA901239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901239 /DB_XREF=gi:4233740 /DB_XREF=UI-R-A1-dw-e-06-0-UI.s1 /CLONE=UI-R-A1-dw-e-06-0-UI /FEA=EST /CNT=5 /TID=Rn.4324.1 /TIER=ConsEnd /STK=0 /UG=Rn.4324 /UG_TITLE=ESTs, Highly similar to CLDI MOUSE CLAUDIN-18 (M.musculus) AA901239 claudin 18 Cldn18 315953 NM_001014096 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 1383563_at BI282373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282373 /DB_XREF=gi:14933076 /DB_XREF=UI-R-CU0s-cbz-h-07-0-UI.s1 /CLONE=UI-R-CU0s-cbz-h-07-0-UI /FEA=EST /CNT=5 /TID=Rn.22492.1 /TIER=ConsEnd /STK=0 /UG=Rn.22492 /UG_TITLE=ESTs BI282373 1383564_at BF411036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411036 /DB_XREF=gi:11399011 /DB_XREF=UI-R-CN0-bmi-h-12-0-UI.s1 /CLONE=UI-R-CN0-bmi-h-12-0-UI /FEA=EST /CNT=5 /TID=Rn.6246.1 /TIER=ConsEnd /STK=0 /UG=Rn.6246 /UG_TITLE=ESTs, Highly similar to IRF7 MOUSE INTERFERON REGULATORY FACTOR 7 (M.musculus) BF411036 interferon regulatory factor 7 Irf7 293624 NM_001033691 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0009615 // response to virus // not recorded /// 0016064 // immunoglobulin mediated immune response // inferred from electronic annotation /// 0016064 // immunoglobulin mediated immune response // not recorded /// 0045351 // type I interferon biosynthetic process // inferred from electronic annotation /// 0045351 // type I interferon biosynthetic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0010008 // endosome membrane // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383565_at BE120852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120852 /DB_XREF=gi:8512957 /DB_XREF=UI-R-BS1-azt-c-04-0-UI.s1 /CLONE=UI-R-BS1-azt-c-04-0-UI /FEA=EST /CNT=5 /TID=Rn.48491.1 /TIER=ConsEnd /STK=0 /UG=Rn.48491 /UG_TITLE=ESTs BE120852 1383566_at AW527690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527690 /DB_XREF=gi:7170104 /DB_XREF=UI-R-BT1-ajy-b-02-0-UI.s1 /CLONE=UI-R-BT1-ajy-b-02-0-UI /FEA=EST /CNT=5 /TID=Rn.35484.1 /TIER=ConsEnd /STK=0 /UG=Rn.35484 /UG_TITLE=ESTs AW527690 1383567_at BI290183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290183 /DB_XREF=gi:14948517 /DB_XREF=UI-R-DK0-cft-b-11-0-UI.s1 /CLONE=UI-R-DK0-cft-b-11-0-UI /FEA=EST /CNT=5 /TID=Rn.45930.1 /TIER=ConsEnd /STK=0 /UG=Rn.45930 /UG_TITLE=ESTs BI290183 collectin sub-family member 11 Colec11 366588 XM_002726687 /// XM_002729610 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1383568_at BF523441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523441 /DB_XREF=gi:11631408 /DB_XREF=UI-R-Y0-vn-g-07-0-UI.r1 /CLONE=UI-R-Y0-vn-g-07-0-UI /FEA=EST /CNT=5 /TID=Rn.12243.2 /TIER=ConsEnd /STK=0 /UG=Rn.12243 /UG_TITLE=ESTs, Moderately similar to TBE_HUMAN TUBULIN EPSILON CHAIN (H.sapiens) BF523441 tubulin, epsilon 1 Tube1 361856 NM_001108536 0007017 // microtubule-based process // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1383569_at AA925804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925804 /DB_XREF=gi:4236995 /DB_XREF=UI-R-A1-et-g-08-0-UI.s1 /CLONE=UI-R-A1-et-g-08-0-UI /FEA=EST /CNT=5 /TID=Rn.37739.1 /TIER=ConsEnd /STK=0 /UG=Rn.37739 /UG_TITLE=ESTs, Weakly similar to mitochondrial processing peptidase beta (Rattus norvegicus) (R.norvegicus) AA925804 peptidase (mitochondrial processing) beta Pmpcb 64198 NM_022395 0006508 // proteolysis // inferred from electronic annotation /// 0006627 // protein processing involved in protein targeting to mitochondrion // traceable author statement 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383570_at BF547887 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547887 /DB_XREF=gi:11638994 /DB_XREF=UI-R-A0-bm-d-01-0-UI.r1 /CLONE=UI-R-A0-bm-d-01-0-UI /FEA=EST /CNT=5 /TID=Rn.25343.1 /TIER=ConsEnd /STK=0 /UG=Rn.25343 /UG_TITLE=ESTs BF547887 PHD finger protein 3 Phf3 363210 NM_001108791 0006350 // transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383571_at BF411217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411217 /DB_XREF=gi:11399192 /DB_XREF=UI-R-CN0-bmh-e-03-0-UI.s1 /CLONE=UI-R-CN0-bmh-e-03-0-UI /FEA=EST /CNT=5 /TID=Rn.17949.1 /TIER=ConsEnd /STK=0 /UG=Rn.17949 /UG_TITLE=ESTs BF411217 Rap guanine nucleotide exchange factor (GEF)-like 1 Rapgefl1 303515 XM_001081409 /// XM_239336 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1383572_at BF414797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414797 /DB_XREF=gi:11402781 /DB_XREF=UI-R-BJ2-bos-b-03-0-UI.s1 /CLONE=UI-R-BJ2-bos-b-03-0-UI /FEA=EST /CNT=5 /TID=Rn.19409.1 /TIER=ConsEnd /STK=0 /UG=Rn.19409 /UG_TITLE=ESTs BF414797 zinc finger, DHHC-type containing 6 Zdhhc6 361771 NM_001037652 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383573_at BE117444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117444 /DB_XREF=gi:8509549 /DB_XREF=UI-R-BS1-ayi-h-04-0-UI.s1 /CLONE=UI-R-BS1-ayi-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.23119.3 /TIER=ConsEnd /STK=0 /UG=Rn.23119 /UG_TITLE=ESTs BE117444 teashirt zinc finger homeobox 1 Tshz1 307217 XM_001060440 /// XM_225688 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0042474 // middle ear morphogenesis // not recorded /// 0060023 // soft palate development // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1383574_at AI502956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502956 /DB_XREF=gi:4400807 /DB_XREF=UI-R-C1-kv-d-04-0-UI.s1 /CLONE=UI-R-C1-kv-d-04-0-UI /FEA=EST /CNT=5 /TID=Rn.25488.1 /TIER=ConsEnd /STK=0 /UG=Rn.25488 /UG_TITLE=ESTs, Moderately similar to MA12 MOUSE MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE (M.musculus) AI502956 mannosidase, alpha, class 1A, member 1 Man1a1 294410 NM_001033656 0000139 // Golgi membrane // not recorded /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0005793 // ER-Golgi intermediate compartment // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004571 // mannosyl-oligosaccharide 1,2-alpha-mannosidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1383575_at BG376561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376561 /DB_XREF=gi:13301033 /DB_XREF=UI-R-CT0-bup-h-10-0-UI.s1 /CLONE=UI-R-CT0-bup-h-10-0-UI /FEA=EST /CNT=5 /TID=Rn.15163.1 /TIER=ConsEnd /STK=0 /UG=Rn.15163 /UG_TITLE=ESTs BG376561 Catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein) Ctnnd2 114028 XM_001064375 /// XM_001065606 0001763 // morphogenesis of a branching structure // inferred from electronic annotation /// 0001763 // morphogenesis of a branching structure // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007612 // learning // inferred from electronic annotation /// 0007612 // learning // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005912 // adherens junction // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1383576_at AW917643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917643 /DB_XREF=gi:8083399 /DB_XREF=EST348947 /CLONE=RGIEG37 /FEA=EST /CNT=5 /TID=Rn.51134.2 /TIER=ConsEnd /STK=0 /UG=Rn.51134 /UG_TITLE=ESTs AW917643 1383577_at AA859277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859277 /DB_XREF=gi:4229630 /DB_XREF=UI-R-E0-cj-g-11-0-UI.s1 /CLONE=UI-R-E0-cj-g-11-0-UI /FEA=EST /CNT=5 /TID=Rn.16990.2 /TIER=ConsEnd /STK=0 /UG=Rn.16990 /UG_TITLE=ESTs AA859277 1383578_at AI071227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071227 /DB_XREF=gi:3397442 /DB_XREF=UI-R-C2-my-h-10-0-UI.s1 /CLONE=UI-R-C2-my-h-10-0-UI /FEA=EST /CNT=5 /TID=Rn.20474.1 /TIER=ConsEnd /STK=0 /UG=Rn.20474 /UG_TITLE=ESTs AI071227 RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) Rad51 499870 NM_001109204 0000724 // double-strand break repair via homologous recombination // not recorded /// 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006268 // DNA unwinding involved in replication // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0007126 // meiosis // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0051106 // positive regulation of DNA ligation // not recorded /// 0051260 // protein homooligomerization // not recorded 0000793 // condensed chromosome // not recorded /// 0000794 // condensed nuclear chromosome // not recorded /// 0000800 // lateral element // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0016605 // PML body // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // not recorded /// 0003697 // single-stranded DNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0008094 // DNA-dependent ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0043142 // single-stranded DNA-dependent ATPase activity // not recorded 1383579_at BE109121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109121 /DB_XREF=gi:8501226 /DB_XREF=UI-R-BS1-azb-b-12-0-UI.s1 /CLONE=UI-R-BS1-azb-b-12-0-UI /FEA=EST /CNT=5 /TID=Rn.12938.1 /TIER=ConsEnd /STK=0 /UG=Rn.12938 /UG_TITLE=ESTs BE109121 1383580_at AA859643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859643 /DB_XREF=gi:4230188 /DB_XREF=UI-R-E0-bs-a-08-0-UI.s1 /CLONE=UI-R-E0-bs-a-08-0-UI /FEA=EST /CNT=5 /TID=Rn.32.1 /TIER=ConsEnd /STK=0 /UG=Rn.32 /UG_TITLE=ESTs AA859643 1383581_at BI290662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290662 /DB_XREF=gi:14949443 /DB_XREF=UI-R-DK0-cfx-h-06-0-UI.s1 /CLONE=UI-R-DK0-cfx-h-06-0-UI /FEA=EST /CNT=5 /TID=Rn.42084.1 /TIER=ConsEnd /STK=0 /UG=Rn.42084 /UG_TITLE=ESTs BI290662 similar to CG3880-PA LOC680531 680531 NM_001109418 1383582_at BG377582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377582 /DB_XREF=gi:13302054 /DB_XREF=UI-R-CU0-buz-e-07-0-UI.s1 /CLONE=UI-R-CU0-buz-e-07-0-UI /FEA=EST /CNT=5 /TID=Rn.12024.1 /TIER=ConsEnd /STK=0 /UG=Rn.12024 /UG_TITLE=ESTs BG377582 transmembrane protein 54 Tmem54 362605 NM_001034151 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1383583_at AW144730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144730 /DB_XREF=gi:6160732 /DB_XREF=EST290976 /CLONE=RGIAW63 /FEA=EST /CNT=5 /TID=Rn.7679.1 /TIER=ConsEnd /STK=0 /UG=Rn.7679 /UG_TITLE=ESTs AW144730 1383584_at BI300599 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300599 /DB_XREF=gi:14976879 /DB_XREF=UI-R-CV2-cim-h-10-0-UI.s1 /CLONE=UI-R-CV2-cim-h-10-0-UI /FEA=EST /CNT=5 /TID=Rn.38470.1 /TIER=ConsEnd /STK=0 /UG=Rn.38470 /UG_TITLE=ESTs BI300599 bestrophin 2 Best2 364973 NM_001108895 0007608 // sensory perception of smell // not recorded /// 0051899 // membrane depolarization // not recorded 0005929 // cilium // not recorded 0005254 // chloride channel activity // not recorded 1383585_s_at AI043753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043753 /DB_XREF=gi:3290488 /DB_XREF=UI-R-C0-jm-a-12-0-UI.s1 /CLONE=UI-R-C0-jm-a-12-0-UI /FEA=EST /CNT=5 /TID=Rn.44192.1 /TIER=ConsEnd /STK=0 /UG=Rn.44192 /UG_TITLE=ESTs AI043753 1383586_at BI295793 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295793 /DB_XREF=gi:14959596 /DB_XREF=UI-R-DK0-cfa-f-12-0-UI.s1 /CLONE=UI-R-DK0-cfa-f-12-0-UI /FEA=EST /CNT=5 /TID=Rn.8144.2 /TIER=ConsEnd /STK=0 /UG=Rn.8144 /UG_TITLE=ESTs BI295793 1383587_at BF283779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283779 /DB_XREF=gi:11214849 /DB_XREF=EST448370 /CLONE=RGIEG71 /FEA=EST /CNT=5 /TID=Rn.24891.1 /TIER=ConsEnd /STK=0 /UG=Rn.24891 /UG_TITLE=ESTs, Weakly similar to T15B7.2.p (Caenorhabditis elegans) (C.elegans) BF283779 similar to Butyrate-induced transcript 1 RGD1565496 300783 NM_001106831 1383588_at BE098610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098610 /DB_XREF=gi:8490474 /DB_XREF=UI-R-BJ1-asx-h-02-0-UI.s1 /CLONE=UI-R-BJ1-asx-h-02-0-UI /FEA=EST /CNT=5 /TID=Rn.39378.1 /TIER=ConsEnd /STK=0 /UG=Rn.39378 /UG_TITLE=ESTs, Highly similar to snRNA activating protein complex 50kD subunit (H.sapiens) BE098610 1383589_at BE103947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103947 /DB_XREF=gi:8496047 /DB_XREF=UI-R-BX0-arj-g-08-0-UI.s1 /CLONE=UI-R-BX0-arj-g-08-0-UI /FEA=EST /CNT=5 /TID=Rn.43117.1 /TIER=ConsEnd /STK=0 /UG=Rn.43117 /UG_TITLE=ESTs, Weakly similar to SLUG_MOUSE ZINC FINGER PROTEIN SLUG (NEURAL CREST TRANSCRIPTION FACTOR SLUG) (M.musculus) BE103947 1383590_at AA963863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963863 /DB_XREF=gi:4278805 /DB_XREF=UI-R-E1-gk-b-04-0-UI.s1 /CLONE=UI-R-E1-gk-b-04-0-UI /FEA=EST /CNT=5 /TID=Rn.12137.1 /TIER=ConsEnd /STK=0 /UG=Rn.12137 /UG_TITLE=ESTs AA963863 chondroitin sulfate N-acetylgalactosaminyltransferase 1 Csgalnact1 306375 NM_001107309 0019276 // UDP-N-acetylgalactosamine metabolic process // inferred from electronic annotation /// 0019276 // UDP-N-acetylgalactosamine metabolic process // not recorded /// 0030206 // chondroitin sulfate biosynthetic process // inferred from electronic annotation /// 0030206 // chondroitin sulfate biosynthetic process // not recorded /// 0046398 // UDP-glucuronate metabolic process // inferred from electronic annotation /// 0046398 // UDP-glucuronate metabolic process // not recorded /// 0050653 // chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process // inferred from electronic annotation /// 0050653 // chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process // not recorded 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0008376 // acetylgalactosaminyltransferase activity // not recorded /// 0008376 // acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0008955 // peptidoglycan glycosyltransferase activity // inferred from electronic annotation /// 0008955 // peptidoglycan glycosyltransferase activity // not recorded /// 0015020 // glucuronosyltransferase activity // inferred from electronic annotation /// 0015020 // glucuronosyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0047237 // glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0047237 // glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity // not recorded /// 0047238 // glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0047238 // glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity // not recorded 1383591_at BM391839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391839 /DB_XREF=gi:18191892 /DB_XREF=UI-R-DO1-cmk-f-16-0-UI.s1 /CLONE=UI-R-DO1-cmk-f-16-0-UI /FEA=EST /CNT=5 /TID=Rn.41492.1 /TIER=ConsEnd /STK=0 /UG=Rn.41492 /UG_TITLE=ESTs, Highly similar to SP62 MOUSE SPLICEOSOME ASSOCIATED PROTEIN 62 (M.musculus) BM391839 splicing factor 3a, subunit 2 Sf3a2 299620 NM_001011986 0006397 // mRNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // not recorded /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383592_at AA925988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925988 /DB_XREF=gi:4237179 /DB_XREF=UI-R-A1-es-a-09-0-UI.s1 /CLONE=UI-R-A1-es-a-09-0-UI /FEA=EST /CNT=5 /TID=Rn.8687.1 /TIER=ConsEnd /STK=0 /UG=Rn.8687 /UG_TITLE=ESTs AA925988 Armadillo repeat containing 8 Armc8 315949 NM_001173354 /// XM_002727126 /// XM_236599 0005488 // binding // inferred from electronic annotation 1383593_at BE113211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113211 /DB_XREF=gi:8505316 /DB_XREF=UI-R-BJ1-awc-h-02-0-UI.s1 /CLONE=UI-R-BJ1-awc-h-02-0-UI /FEA=EST /CNT=5 /TID=Rn.12318.2 /TIER=ConsEnd /STK=0 /UG=Rn.12318 /UG_TITLE=ESTs BE113211 Transmembrane protein 56 Tmem56 365924 NM_001135879 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1383594_at AW914775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW914775 /DB_XREF=gi:8080454 /DB_XREF=EST346079 /CLONE=RGIBH14 /FEA=EST /CNT=5 /TID=Rn.19017.2 /TIER=ConsEnd /STK=0 /UG=Rn.19017 /UG_TITLE=ESTs AW914775 coiled-coil domain containing 91 Ccdc91 312863 NM_001014061 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1383595_at AW533961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533961 /DB_XREF=gi:7176335 /DB_XREF=UI-R-C4-alw-f-10-0-UI.s1 /CLONE=UI-R-C4-alw-f-10-0-UI /FEA=EST /CNT=5 /TID=Rn.26839.1 /TIER=ConsEnd /STK=0 /UG=Rn.26839 /UG_TITLE=ESTs AW533961 1383596_at AA956300 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956300 /DB_XREF=gi:4238694 /DB_XREF=UI-R-E1-fh-g-08-0-UI.s1 /CLONE=UI-R-E1-fh-g-08-0-UI /FEA=EST /CNT=5 /TID=Rn.9607.1 /TIER=ConsEnd /STK=0 /UG=Rn.9607 /UG_TITLE=ESTs, Weakly similar to F53B7.3.p (Caenorhabditis elegans) (C.elegans) AA956300 ISY1 splicing factor homolog (S. cerevisiae) Isy1 362394 NM_001014188 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1383597_at AI072301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072301 /DB_XREF=gi:3398495 /DB_XREF=UI-R-C2-ng-a-08-0-UI.s1 /CLONE=UI-R-C2-ng-a-08-0-UI /FEA=EST /CNT=5 /TID=Rn.20120.1 /TIER=ConsEnd /STK=0 /UG=Rn.20120 /UG_TITLE=ESTs AI072301 DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) Dclre1c 259171 NM_147145 0000723 // telomere maintenance // inferred from electronic annotation /// 0000723 // telomere maintenance // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006302 // double-strand break repair // not recorded /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006310 // DNA recombination // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010212 // response to ionizing radiation // inferred from electronic annotation /// 0010212 // response to ionizing radiation // not recorded /// 0030183 // B cell differentiation // inferred from electronic annotation /// 0030183 // B cell differentiation // not recorded /// 0051276 // chromosome organization // inferred from electronic annotation /// 0051276 // chromosome organization // not recorded 0005634 // nucleus // inferred from electronic annotation 0000014 // single-stranded DNA specific endodeoxyribonuclease activity // inferred from electronic annotation /// 0000014 // single-stranded DNA specific endodeoxyribonuclease activity // not recorded /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0008409 // 5'-3' exonuclease activity // inferred from electronic annotation /// 0008409 // 5'-3' exonuclease activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1383598_at AI136294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136294 /DB_XREF=gi:3637071 /DB_XREF=UI-R-C2p-oa-d-07-0-UI.s1 /CLONE=UI-R-C2p-oa-d-07-0-UI /FEA=EST /CNT=5 /TID=Rn.23670.1 /TIER=ConsEnd /STK=0 /UG=Rn.23670 /UG_TITLE=ESTs AI136294 WD repeat domain 91 Wdr91 312225 NM_001127298 1383599_at BE101133 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101133 /DB_XREF=gi:8493042 /DB_XREF=UI-R-BJ1-auh-e-03-0-UI.s1 /CLONE=UI-R-BJ1-auh-e-03-0-UI /FEA=EST /CNT=5 /TID=Rn.7745.2 /TIER=ConsEnd /STK=0 /UG=Rn.7745 /UG_TITLE=ESTs, Moderately similar to RB48 MOUSE CHROMATIN ASSEMBLY FACTOR 1 P48 SUBUNIT (M.musculus) BE101133 1383600_at BG381311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381311 /DB_XREF=gi:13305783 /DB_XREF=UI-R-CT0-bui-g-01-0-UI.s1 /CLONE=UI-R-CT0-bui-g-01-0-UI /FEA=EST /CNT=5 /TID=Rn.50890.1 /TIER=ConsEnd /STK=0 /UG=Rn.50890 /UG_TITLE=ESTs BG381311 solute carrier family 13 (sodium-dependent citrate transporter), member 5 Slc13a5 266998 NM_170668 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006842 // tricarboxylic acid transport // not recorded /// 0006842 // tricarboxylic acid transport // inferred from electronic annotation /// 0015744 // succinate transport // inferred from direct assay /// 0015744 // succinate transport // not recorded /// 0015744 // succinate transport // inferred from electronic annotation /// 0015746 // citrate transport // inferred from direct assay /// 0015746 // citrate transport // not recorded /// 0015746 // citrate transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055085 // transmembrane transport // not recorded /// 0071422 // succinate transmembrane transport // not recorded 0005626 // insoluble fraction // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0005343 // organic acid:sodium symporter activity // inferred from direct assay /// 0015137 // citrate transmembrane transporter activity // inferred from direct assay /// 0015137 // citrate transmembrane transporter activity // not recorded /// 0015137 // citrate transmembrane transporter activity // inferred from electronic annotation /// 0015141 // succinate transmembrane transporter activity // inferred from direct assay /// 0015141 // succinate transmembrane transporter activity // not recorded /// 0015141 // succinate transmembrane transporter activity // inferred from electronic annotation /// 0015142 // tricarboxylic acid transmembrane transporter activity // not recorded /// 0015142 // tricarboxylic acid transmembrane transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0017153 // sodium:dicarboxylate symporter activity // inferred from direct assay 1383601_at BI295614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295614 /DB_XREF=gi:14959239 /DB_XREF=UI-R-DK0-cek.1-e-02-0-UI.s2 /CLONE=UI-R-DK0-cek.1-e-02-0-UI /FEA=EST /CNT=5 /TID=Rn.17704.1 /TIER=ConsEnd /STK=0 /UG=Rn.17704 /UG_TITLE=ESTs BI295614 BCL2-associated transcription factor 1 Bclaf1 293017 NM_001047852 0016481 // negative regulation of transcription // not recorded /// 0043065 // positive regulation of apoptosis // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded 1383602_at BE112428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112428 /DB_XREF=gi:8504533 /DB_XREF=UI-R-BJ1-avm-e-09-0-UI.s1 /CLONE=UI-R-BJ1-avm-e-09-0-UI /FEA=EST /CNT=5 /TID=Rn.20348.1 /TIER=ConsEnd /STK=0 /UG=Rn.20348 /UG_TITLE=ESTs BE112428 pumilio homolog 1 (Drosophila) Pum1 362609 NM_001108684 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0016044 // cellular membrane organization // not recorded 0005829 // cytosol // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1383603_at BM385552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385552 /DB_XREF=gi:18185605 /DB_XREF=UI-R-DM1-ckd-k-07-0-UI.s1 /CLONE=UI-R-DM1-ckd-k-07-0-UI /FEA=EST /CNT=5 /TID=Rn.24481.1 /TIER=ConsEnd /STK=0 /UG=Rn.24481 /UG_TITLE=ESTs BM385552 1383604_at BF388821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388821 /DB_XREF=gi:11373645 /DB_XREF=UI-R-BS2-bde-h-08-0-UI.s1 /CLONE=UI-R-BS2-bde-h-08-0-UI /FEA=EST /CNT=5 /TID=Rn.24547.1 /TIER=ConsEnd /STK=0 /UG=Rn.24547 /UG_TITLE=ESTs BF388821 1383605_at BE119842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119842 /DB_XREF=gi:8511947 /DB_XREF=UI-R-CA0-ban-f-06-0-UI.s1 /CLONE=UI-R-CA0-ban-f-06-0-UI /FEA=EST /CNT=5 /TID=Rn.22709.1 /TIER=ConsEnd /STK=0 /UG=Rn.22709 /UG_TITLE=ESTs, Weakly similar to FETA RAT ALPHA-FETOPROTEIN PRECURSOR (R.norvegicus) BE119842 similar to alpha-fetoprotein LOC360919 360919 NM_001108356 0006810 // transport // inferred from electronic annotation 0005615 // extracellular space // inferred from electronic annotation 1383606_at BI302544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302544 /DB_XREF=gi:14978829 /DB_XREF=UI-R-DM0-cir-b-19-0-UI.s1 /CLONE=UI-R-DM0-cir-b-19-0-UI /FEA=EST /CNT=5 /TID=Rn.43919.1 /TIER=ConsEnd /STK=0 /UG=Rn.43919 /UG_TITLE=ESTs BI302544 tandem C2 domains, nuclear Tc2n 500707 NM_001025152 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 1383607_at BG377487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377487 /DB_XREF=gi:13301959 /DB_XREF=UI-R-CU0-bvd-c-10-0-UI.s1 /CLONE=UI-R-CU0-bvd-c-10-0-UI /FEA=EST /CNT=5 /TID=Rn.12772.1 /TIER=ConsEnd /STK=0 /UG=Rn.12772 /UG_TITLE=ESTs BG377487 1383608_at AI145231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145231 /DB_XREF=gi:3667030 /DB_XREF=UI-R-BT0-qf-b-01-0-UI.s1 /CLONE=UI-R-BT0-qf-b-01-0-UI /FEA=EST /CNT=5 /TID=Rn.22831.1 /TIER=ConsEnd /STK=0 /UG=Rn.22831 /UG_TITLE=ESTs AI145231 arrestin domain containing 2 Arrdc2 306344 NM_001107303 0007165 // signal transduction // inferred from electronic annotation /// 0007600 // sensory perception // inferred from electronic annotation 1383609_at BI276086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276086 /DB_XREF=gi:14920659 /DB_XREF=UI-R-CW0-bwn-h-09-0-UI.s1 /CLONE=UI-R-CW0-bwn-h-09-0-UI /FEA=EST /CNT=5 /TID=Rn.13340.1 /TIER=ConsEnd /STK=0 /UG=Rn.13340 /UG_TITLE=ESTs BI276086 1383610_at BF386078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386078 /DB_XREF=gi:11370902 /DB_XREF=UI-R-CA0-bad-f-11-0-UI.s1 /CLONE=UI-R-CA0-bad-f-11-0-UI /FEA=EST /CNT=5 /TID=Rn.39687.1 /TIER=ConsEnd /STK=0 /UG=Rn.39687 /UG_TITLE=ESTs, Highly similar to EYA2 MOUSE EYES ABSENT HOMOLOG 2 (M.musculus) BF386078 Eyes absent homolog 2 (Drosophila) Eya2 156826 NM_130427 0006470 // protein dephosphorylation // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016576 // histone dephosphorylation // not recorded /// 0016576 // histone dephosphorylation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1383611_at AI145497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145497 /DB_XREF=gi:3667296 /DB_XREF=UI-R-BT0-qf-g-09-0-UI.s1 /CLONE=UI-R-BT0-qf-g-09-0-UI /FEA=EST /CNT=5 /TID=Rn.23997.1 /TIER=ConsEnd /STK=0 /UG=Rn.23997 /UG_TITLE=ESTs AI145497 1383612_at AI454134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454134 /DB_XREF=gi:4291600 /DB_XREF=UI-R-BT0-pu-c-12-0-UI.s1 /CLONE=UI-R-BT0-pu-c-12-0-UI /FEA=EST /CNT=5 /TID=Rn.35743.1 /TIER=ConsEnd /STK=0 /UG=Rn.35743 /UG_TITLE=ESTs AI454134 1383613_at AW530263 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530263 /DB_XREF=gi:7172677 /DB_XREF=UI-R-BU0-amu-e-11-0-UI.s1 /CLONE=UI-R-BU0-amu-e-11-0-UI /FEA=EST /CNT=5 /TID=Rn.47415.1 /TIER=ConsEnd /STK=0 /UG=Rn.47415 /UG_TITLE=ESTs AW530263 1383614_at BI295051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295051 /DB_XREF=gi:14958108 /DB_XREF=UI-R-DK0-cef-c-06-0-UI.s1 /CLONE=UI-R-DK0-cef-c-06-0-UI /FEA=EST /CNT=5 /TID=Rn.16922.1 /TIER=ConsEnd /STK=0 /UG=Rn.16922 /UG_TITLE=ESTs BI295051 NUAK family, SNF1-like kinase, 2 Nuak2 289419 NM_001007617 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0030036 // actin cytoskeleton organization // inferred from sequence or structural similarity /// 0042149 // cellular response to glucose starvation // inferred from direct assay /// 0042149 // cellular response to glucose starvation // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383615_a_at AI059295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059295 /DB_XREF=gi:3333072 /DB_XREF=UI-R-C1-lf-a-03-0-UI.s1 /CLONE=UI-R-C1-lf-a-03-0-UI /FEA=EST /CNT=1 /TID=Rn.16492.2 /TIER=ConsEnd /STK=0 /UG=Rn.16492 /UG_TITLE=ESTs, Weakly similar to S18188 notch protein homolog - rat (R.norvegicus) AI059295 HECT domain containing 1 Hectd1 362736 XM_001078686 /// XM_343060 0001843 // neural tube closure // not recorded /// 0006464 // protein modification process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383616_at AA997562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997562 /DB_XREF=gi:4284562 /DB_XREF=UI-R-C0-hw-c-10-0-UI.s1 /CLONE=UI-R-C0-hw-c-10-0-UI /FEA=EST /CNT=5 /TID=Rn.22261.1 /TIER=ConsEnd /STK=0 /UG=Rn.22261 /UG_TITLE=ESTs, Moderately similar to class II cytokine receptor 4 (M.musculus) AA997562 interleukin 10 receptor, beta Il10rb 304091 NM_001107111 0007596 // blood coagulation // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0004920 // interleukin-10 receptor activity // not recorded /// 0005515 // protein binding // not recorded 1383617_at BF401603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401603 /DB_XREF=gi:11389578 /DB_XREF=UI-R-CA0-bgm-e-09-0-UI.s1 /CLONE=UI-R-CA0-bgm-e-09-0-UI /FEA=EST /CNT=5 /TID=Rn.17679.1 /TIER=ConsEnd /STK=0 /UG=Rn.17679 /UG_TITLE=ESTs, Weakly similar to S61993 probable membrane protein YOR009w - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BF401603 CDKN2A interacting protein Cdkn2aip 306455 NM_001014000 0009967 // positive regulation of signal transduction // inferred from electronic annotation /// 0009967 // positive regulation of signal transduction // not recorded /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0031647 // regulation of protein stability // inferred from electronic annotation /// 0031647 // regulation of protein stability // not recorded 0001652 // granular component // inferred from electronic annotation /// 0001652 // granular component // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0002039 // p53 binding // inferred from electronic annotation /// 0002039 // p53 binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1383618_at BG378538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378538 /DB_XREF=gi:13303010 /DB_XREF=UI-R-CU0-bvk-e-11-0-UI.s1 /CLONE=UI-R-CU0-bvk-e-11-0-UI /FEA=EST /CNT=5 /TID=Rn.34217.1 /TIER=ConsEnd /STK=0 /UG=Rn.34217 /UG_TITLE=ESTs BG378538 mitochondrial ribosomal protein L38 Mrpl38 303685 NM_001009369 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 1383619_at BE105983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105983 /DB_XREF=gi:8498085 /DB_XREF=UI-R-BX0-asc-e-05-0-UI.s1 /CLONE=UI-R-BX0-asc-e-05-0-UI /FEA=EST /CNT=5 /TID=Rn.47929.1 /TIER=ConsEnd /STK=0 /UG=Rn.47929 /UG_TITLE=ESTs BE105983 myotubularin related protein 4 Mtmr4 287607 NM_001105827 0016311 // dephosphorylation // inferred from electronic annotation 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383620_at BF407257 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407257 /DB_XREF=gi:11395232 /DB_XREF=UI-R-BJ2-bqc-e-06-0-UI.s1 /CLONE=UI-R-BJ2-bqc-e-06-0-UI /FEA=EST /CNT=5 /TID=Rn.63906.1 /TIER=ConsEnd /STK=0 /UG=Rn.63906 /UG_TITLE=ESTs BF407257 1383621_at AW526365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526365 /DB_XREF=gi:7168750 /DB_XREF=UI-R-BO1-ajb-c-09-0-UI.s1 /CLONE=UI-R-BO1-ajb-c-09-0-UI /FEA=EST /CNT=5 /TID=Rn.28914.1 /TIER=ConsEnd /STK=0 /UG=Rn.28914 /UG_TITLE=ESTs AW526365 1383622_at AI228084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228084 /DB_XREF=gi:3811971 /DB_XREF=EST224779 /CLONE=RBRCQ05 /FEA=EST /CNT=5 /TID=Rn.24830.1 /TIER=ConsEnd /STK=0 /UG=Rn.24830 /UG_TITLE=ESTs AI228084 1383623_at BM383909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383909 /DB_XREF=gi:18183962 /DB_XREF=UI-R-DM1-ckc-o-18-0-UI.s1 /CLONE=UI-R-DM1-ckc-o-18-0-UI /FEA=EST /CNT=5 /TID=Rn.28288.1 /TIER=ConsEnd /STK=0 /UG=Rn.28288 /UG_TITLE=ESTs, Weakly similar to T24582 hypothetical protein T06D8.9 - Caenorhabditis elegans (C.elegans) BM383909 thymocyte nuclear protein 1 Thyn1 300470 NM_001007661 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 1383624_at BF420279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420279 /DB_XREF=gi:11408268 /DB_XREF=UI-R-BJ2-bpl-a-05-0-UI.s1 /CLONE=UI-R-BJ2-bpl-a-05-0-UI /FEA=EST /CNT=5 /TID=Rn.21557.1 /TIER=ConsEnd /STK=0 /UG=Rn.21557 /UG_TITLE=ESTs BF420279 similar to hypothetical protein LOC284018 isoform b RGD1565033 498014 NM_001109050 0005515 // protein binding // inferred from electronic annotation 1383625_a_at BF288164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288164 /DB_XREF=gi:11219234 /DB_XREF=EST452755 /CLONE=RGIGQ31 /FEA=EST /CNT=2 /TID=Rn.31727.2 /TIER=ConsEnd /STK=1 /UG=Rn.31727 /UG_TITLE=ESTs, Highly similar to ZPR1 MOUSE ZINC-FINGER PROTEIN ZPR1 (M.musculus) BF288164 zinc finger protein 259 Zfp259 500989 NM_001137646 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded 1383626_at BI274049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274049 /DB_XREF=gi:14884602 /DB_XREF=UI-R-CW0-bwc-b-05-0-UI.s1 /CLONE=UI-R-CW0-bwc-b-05-0-UI /FEA=EST /CNT=5 /TID=Rn.31727.1 /TIER=ConsEnd /STK=0 /UG=Rn.31727 /UG_TITLE=ESTs, Highly similar to ZPR1 MOUSE ZINC-FINGER PROTEIN ZPR1 (M.musculus) BI274049 zinc finger protein 259 Zfp259 500989 NM_001137646 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded 1383627_a_at BF420770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420770 /DB_XREF=gi:11408759 /DB_XREF=UI-R-BJ2-bqa-a-07-0-UI.s1 /CLONE=UI-R-BJ2-bqa-a-07-0-UI /FEA=EST /CNT=5 /TID=Rn.37640.1 /TIER=ConsEnd /STK=0 /UG=Rn.37640 /UG_TITLE=ESTs, Highly similar to 1804353A transcription factor RAP74 (H.sapiens) BF420770 general transcription factor IIF, polypeptide 1 Gtf2f1 316123 NM_001007711 0006350 // transcription // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0008380 // RNA splicing // not recorded /// 0009615 // response to virus // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0019211 // phosphatase activator activity // not recorded 1383628_at BG376623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376623 /DB_XREF=gi:13301095 /DB_XREF=UI-R-CU0-buu-h-03-0-UI.s1 /CLONE=UI-R-CU0-buu-h-03-0-UI /FEA=EST /CNT=5 /TID=Rn.13182.1 /TIER=ConsEnd /STK=0 /UG=Rn.13182 /UG_TITLE=ESTs BG376623 1383629_a_at BI289966 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289966 /DB_XREF=gi:14948096 /DB_XREF=UI-R-DK0-cfq-d-02-0-UI.s1 /CLONE=UI-R-DK0-cfq-d-02-0-UI /FEA=EST /CNT=5 /TID=Rn.17587.1 /TIER=ConsEnd /STK=0 /UG=Rn.17587 /UG_TITLE=ESTs, Moderately similar to T46396 hypothetical protein DKFZp434I1820.1 (H.sapiens) BI289966 RNA-binding region (RNP1, RRM) containing 3 Rnpc3 691538 NM_001100810 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005689 // U12-type spliceosomal complex // inferred from electronic annotation /// 0005689 // U12-type spliceosomal complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383630_at BG377464 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377464 /DB_XREF=gi:13301936 /DB_XREF=UI-R-CU0-bvd-a-09-0-UI.s1 /CLONE=UI-R-CU0-bvd-a-09-0-UI /FEA=EST /CNT=5 /TID=Rn.19911.1 /TIER=ConsEnd /STK=0 /UG=Rn.19911 /UG_TITLE=ESTs BG377464 docking protein 3 Dok3 306760 NM_001107336 0007265 // Ras protein signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005158 // insulin receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383631_at BI296244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296244 /DB_XREF=gi:14960491 /DB_XREF=UI-R-DK0-cey-a-09-0-UI.s1 /CLONE=UI-R-DK0-cey-a-09-0-UI /FEA=EST /CNT=5 /TID=Rn.23748.1 /TIER=ConsEnd /STK=0 /UG=Rn.23748 /UG_TITLE=ESTs, Moderately similar to STT3 MOUSE OLIGOSACCHARYL TRANSFERASE STT3 SUBUNIT HOMOLOG (M.musculus) BI296244 STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae) Stt3b 363160 NM_001170539 /// XM_002727142 /// XM_002729974 0006486 // protein glycosylation // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // not recorded /// 0018279 // protein N-linked glycosylation via asparagine // inferred from electronic annotation 0008250 // oligosaccharyltransferase complex // not recorded /// 0008250 // oligosaccharyltransferase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004576 // oligosaccharyl transferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1383632_at BI295105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295105 /DB_XREF=gi:14958218 /DB_XREF=UI-R-DK0-cef-h-04-0-UI.s1 /CLONE=UI-R-DK0-cef-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.24201.1 /TIER=ConsEnd /STK=0 /UG=Rn.24201 /UG_TITLE=ESTs BI295105 1383633_at BI289884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289884 /DB_XREF=gi:14947919 /DB_XREF=UI-R-DK0-cfp-d-08-0-UI.s1 /CLONE=UI-R-DK0-cfp-d-08-0-UI /FEA=EST /CNT=5 /TID=Rn.24693.2 /TIER=ConsEnd /STK=0 /UG=Rn.24693 /UG_TITLE=ESTs BI289884 1383634_at BI298546 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298546 /DB_XREF=gi:14974826 /DB_XREF=UI-R-CV2-chk-f-09-0-UI.s1 /CLONE=UI-R-CV2-chk-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.29091.1 /TIER=ConsEnd /STK=0 /UG=Rn.29091 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) BI298546 zinc finger protein 653 Zfp653 300446 NM_001106807 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1383635_at BM385099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385099 /DB_XREF=gi:18185152 /DB_XREF=UI-R-CN1-cjm-p-17-0-UI.s9 /CLONE=UI-R-CN1-cjm-p-17-0-UI /FEA=EST /CNT=5 /TID=Rn.34313.1 /TIER=ConsEnd /STK=0 /UG=Rn.34313 /UG_TITLE=ESTs, Weakly similar to DEAD BOX PROTEIN 4 (R.norvegicus) BM385099 DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 Ddx59 289402 NM_001005535 /// NM_001190820 0005622 // intracellular // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383636_at AA997509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997509 /DB_XREF=gi:4284138 /DB_XREF=UI-R-C0-hw-f-12-0-UI.s1 /CLONE=UI-R-C0-hw-f-12-0-UI /FEA=EST /CNT=5 /TID=Rn.12729.1 /TIER=ConsEnd /STK=0 /UG=Rn.12729 /UG_TITLE=ESTs AA997509 1383637_at AA925807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925807 /DB_XREF=gi:4236998 /DB_XREF=UI-R-A1-et-g-11-0-UI.s1 /CLONE=UI-R-A1-et-g-11-0-UI /FEA=EST /CNT=5 /TID=Rn.15608.1 /TIER=ConsEnd /STK=0 /UG=Rn.15608 /UG_TITLE=ESTs AA925807 1383638_at AW524125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524125 /DB_XREF=gi:7166510 /DB_XREF=UI-R-BO0-ahr-g-09-0-UI.s1 /CLONE=UI-R-BO0-ahr-g-09-0-UI /FEA=EST /CNT=5 /TID=Rn.24671.1 /TIER=ConsEnd /STK=0 /UG=Rn.24671 /UG_TITLE=ESTs AW524125 1383639_at AA924348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924348 /DB_XREF=gi:4234488 /DB_XREF=UI-R-A1-dr-b-11-0-UI.s3 /CLONE=UI-R-A1-dr-b-11-0-UI /FEA=EST /CNT=5 /TID=Rn.8327.1 /TIER=ConsEnd /STK=0 /UG=Rn.8327 /UG_TITLE=ESTs AA924348 1383640_at BI294569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294569 /DB_XREF=gi:14957148 /DB_XREF=UI-R-DK0-cel-g-08-0-UI.s1 /CLONE=UI-R-DK0-cel-g-08-0-UI /FEA=EST /CNT=5 /TID=Rn.40214.1 /TIER=ConsEnd /STK=0 /UG=Rn.40214 /UG_TITLE=ESTs BI294569 1383641_at BF414702 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414702 /DB_XREF=gi:11402691 /DB_XREF=UI-R-BJ2-bow-b-01-0-UI.s1 /CLONE=UI-R-BJ2-bow-b-01-0-UI /FEA=EST /CNT=5 /TID=Rn.2537.1 /TIER=ConsEnd /STK=0 /UG=Rn.2537 /UG_TITLE=ESTs BF414702 endothelin receptor type A Ednra 24326 NM_012550 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // not recorded /// 0008217 // regulation of blood pressure // not recorded /// 0014032 // neural crest cell development // inferred from electronic annotation /// 0014032 // neural crest cell development // not recorded /// 0014824 // artery smooth muscle contraction // inferred from electronic annotation /// 0014824 // artery smooth muscle contraction // not recorded /// 0015758 // glucose transport // inferred from electronic annotation /// 0015758 // glucose transport // not recorded /// 0030818 // negative regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0030818 // negative regulation of cAMP biosynthetic process // not recorded /// 0042310 // vasoconstriction // inferred from mutant phenotype /// 0042310 // vasoconstriction // not recorded /// 0042310 // vasoconstriction // inferred from electronic annotation /// 0043278 // response to morphine // inferred from mutant phenotype /// 0050678 // regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0050729 // positive regulation of inflammatory response // inferred from mutant phenotype /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from mutant phenotype /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // inferred from mutant phenotype /// 0051928 // positive regulation of calcium ion transport // inferred from mutant phenotype 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030315 // T-tubule // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay 0001599 // endothelin-A receptor activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004962 // endothelin receptor activity // not recorded /// 0004962 // endothelin receptor activity // traceable author statement /// 0004962 // endothelin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383642_at BG374114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374114 /DB_XREF=gi:13298586 /DB_XREF=UI-R-CV1-bsj-f-04-0-UI.s1 /CLONE=UI-R-CV1-bsj-f-04-0-UI /FEA=EST /CNT=5 /TID=Rn.16087.1 /TIER=ConsEnd /STK=0 /UG=Rn.16087 /UG_TITLE=ESTs BG374114 1383643_at BI282584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282584 /DB_XREF=gi:14933500 /DB_XREF=UI-R-DD0-bzy-g-05-0-UI.s1 /CLONE=UI-R-DD0-bzy-g-05-0-UI /FEA=EST /CNT=5 /TID=Rn.15304.1 /TIER=ConsEnd /STK=0 /UG=Rn.15304 /UG_TITLE=ESTs, Highly similar to HSPC005 (H.sapiens) BI282584 similar to UPF0197 protein C11orf10 homolog RGD1560328 499317 XM_001074464 /// XM_574622 1383644_at BM385202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385202 /DB_XREF=gi:18185255 /DB_XREF=UI-R-CN1-cjs-h-02-0-UI.s2 /CLONE=UI-R-CN1-cjs-h-02-0-UI /FEA=EST /CNT=5 /TID=Rn.21471.1 /TIER=ConsEnd /STK=0 /UG=Rn.21471 /UG_TITLE=ESTs BM385202 1383645_at BF411062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411062 /DB_XREF=gi:11399037 /DB_XREF=UI-R-CN0-bmg-c-07-0-UI.s1 /CLONE=UI-R-CN0-bmg-c-07-0-UI /FEA=EST /CNT=5 /TID=Rn.6609.1 /TIER=ConsEnd /STK=0 /UG=Rn.6609 /UG_TITLE=ESTs BF411062 1383646_at AI072798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072798 /DB_XREF=gi:3398992 /DB_XREF=UI-R-Y0-lw-b-11-0-UI.s1 /CLONE=UI-R-Y0-lw-b-11-0-UI /FEA=EST /CNT=5 /TID=Rn.7606.1 /TIER=ConsEnd /STK=0 /UG=Rn.7606 /UG_TITLE=ESTs AI072798 1383647_a_at BI283883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283883 /DB_XREF=gi:14936064 /DB_XREF=UI-R-CX0s-ccx-g-09-0-UI.s1 /CLONE=UI-R-CX0s-ccx-g-09-0-UI /FEA=EST /CNT=5 /TID=Rn.14560.1 /TIER=ConsEnd /STK=0 /UG=Rn.14560 /UG_TITLE=ESTs BI283883 crumbs homolog 3 (Drosophila) Crb3 301112 NM_001025661 1383648_x_at BI283883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283883 /DB_XREF=gi:14936064 /DB_XREF=UI-R-CX0s-ccx-g-09-0-UI.s1 /CLONE=UI-R-CX0s-ccx-g-09-0-UI /FEA=EST /CNT=5 /TID=Rn.14560.1 /TIER=ConsEnd /STK=0 /UG=Rn.14560 /UG_TITLE=ESTs BI283883 crumbs homolog 3 (Drosophila) Crb3 301112 NM_001025661 1383649_a_at BI291080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291080 /DB_XREF=gi:14950290 /DB_XREF=UI-R-DK0-cgf-c-03-0-UI.s1 /CLONE=UI-R-DK0-cgf-c-03-0-UI /FEA=EST /CNT=5 /TID=Rn.3068.1 /TIER=ConsEnd /STK=0 /UG=Rn.3068 /UG_TITLE=ESTs BI291080 similar to integrator complex subunit 6 isoform a LOC681665 681665 XM_002727691 1383650_at BI291080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291080 /DB_XREF=gi:14950290 /DB_XREF=UI-R-DK0-cgf-c-03-0-UI.s1 /CLONE=UI-R-DK0-cgf-c-03-0-UI /FEA=EST /CNT=5 /TID=Rn.3068.1 /TIER=ConsEnd /STK=0 /UG=Rn.3068 /UG_TITLE=ESTs BI291080 similar to integrator complex subunit 6 isoform a LOC681665 681665 XM_002727691 1383651_a_at AA964509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964509 /DB_XREF=gi:4279383 /DB_XREF=UI-R-C0-gv-f-02-0-UI.s1 /CLONE=UI-R-C0-gv-f-02-0-UI /FEA=EST /CNT=5 /TID=Rn.11823.1 /TIER=ConsEnd /STK=0 /UG=Rn.11823 /UG_TITLE=ESTs AA964509 Wdr45 like Wdr45l 360682 NM_001039587 1383652_at BF409138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409138 /DB_XREF=gi:11397113 /DB_XREF=UI-R-BT1-bkm-d-11-0-UI.s1 /CLONE=UI-R-BT1-bkm-d-11-0-UI /FEA=EST /CNT=5 /TID=Rn.11916.1 /TIER=ConsEnd /STK=0 /UG=Rn.11916 /UG_TITLE=ESTs, Weakly similar to K05C4.2.p (Caenorhabditis elegans) (C.elegans) BF409138 jagunal homolog 1 (Drosophila) Jagn1 502872 NM_001044272 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1383653_at BG374126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374126 /DB_XREF=gi:13298603 /DB_XREF=UI-R-CV1-bsj-g-12-0-UI.s1 /CLONE=UI-R-CV1-bsj-g-12-0-UI /FEA=EST /CNT=5 /TID=Rn.13268.1 /TIER=ConsEnd /STK=0 /UG=Rn.13268 /UG_TITLE=ESTs BG374126 sorting nexin 11 Snx11 303493 NM_001012012 0007154 // cell communication // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1383654_a_at BE112523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112523 /DB_XREF=gi:8504628 /DB_XREF=UI-R-BJ1-avi-f-10-0-UI.s1 /CLONE=UI-R-BJ1-avi-f-10-0-UI /FEA=EST /CNT=1 /TID=Rn.14724.2 /TIER=ConsEnd /STK=0 /UG=Rn.14724 /UG_TITLE=ESTs, Highly similar to fructosamine 3 kinase (Mus musculus) (M.musculus) BE112523 fructosamine 3 kinase Fn3k 498034 NM_001109051 0016310 // phosphorylation // not recorded /// 0030389 // fructosamine metabolic process // not recorded 0030387 // fructosamine-3-kinase activity // not recorded 1383655_at BF545192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545192 /DB_XREF=gi:11636299 /DB_XREF=UI-R-C2p-ry-b-05-0-UI.r1 /CLONE=UI-R-C2p-ry-b-05-0-UI /FEA=EST /CNT=5 /TID=Rn.17607.1 /TIER=ConsEnd /STK=0 /UG=Rn.17607 /UG_TITLE=ESTs BF545192 TNFAIP3 interacting protein 2 Tnip2 305451 NM_001024771 0007249 // I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383656_at BM387554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387554 /DB_XREF=gi:18187607 /DB_XREF=UI-R-CN1-cjl-i-22-0-UI.s1 /CLONE=UI-R-CN1-cjl-i-22-0-UI /FEA=EST /CNT=5 /TID=Rn.18634.1 /TIER=ConsEnd /STK=0 /UG=Rn.18634 /UG_TITLE=ESTs BM387554 1383657_at BI288276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288276 /DB_XREF=gi:14944704 /DB_XREF=UI-R-DK0-ccz-a-08-0-UI.s1 /CLONE=UI-R-DK0-ccz-a-08-0-UI /FEA=EST /CNT=5 /TID=Rn.3253.1 /TIER=ConsEnd /STK=0 /UG=Rn.3253 /UG_TITLE=ESTs, Weakly similar to FASCIN (M.musculus) BI288276 fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus) Fscn3 296947 NM_001004232 0007286 // spermatid development // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0030674 // protein binding, bridging // inferred from electronic annotation /// 0051015 // actin filament binding // traceable author statement /// 0051015 // actin filament binding // inferred from electronic annotation 1383658_at BF406601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406601 /DB_XREF=gi:11394576 /DB_XREF=UI-R-BJ2-bpv-a-03-0-UI.s1 /CLONE=UI-R-BJ2-bpv-a-03-0-UI /FEA=EST /CNT=5 /TID=Rn.6765.1 /TIER=ConsEnd /STK=0 /UG=Rn.6765 /UG_TITLE=ESTs BF406601 lysosomal protein transmembrane 5 Laptm5 89783 NM_053538 0006810 // transport // inferred from electronic annotation 0005764 // lysosome // inferred from direct assay /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1383659_a_at BG380561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380561 /DB_XREF=gi:13305033 /DB_XREF=UI-R-CT0-bty-g-05-0-UI.s1 /CLONE=UI-R-CT0-bty-g-05-0-UI /FEA=EST /CNT=5 /TID=Rn.6766.1 /TIER=ConsEnd /STK=0 /UG=Rn.6766 /UG_TITLE=ESTs, Weakly similar to MAGEF1 protein (Homo sapiens) (H.sapiens) BG380561 rCG36634-like LOC100364467 100364467 XM_002724742 1383660_at AI713166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI713166 /DB_XREF=gi:5016966 /DB_XREF=UI-R-Y0-aaz-a-06-0-UI.s1 /CLONE=UI-R-Y0-aaz-a-06-0-UI /FEA=EST /CNT=5 /TID=Rn.14604.1 /TIER=ConsEnd /STK=0 /UG=Rn.14604 /UG_TITLE=ESTs AI713166 1383661_at AA926037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926037 /DB_XREF=gi:4237228 /DB_XREF=UI-R-A1-el-b-02-0-UI.s1 /CLONE=UI-R-A1-el-b-02-0-UI /FEA=EST /CNT=5 /TID=Rn.15645.1 /TIER=ConsEnd /STK=0 /UG=Rn.15645 /UG_TITLE=ESTs AA926037 1383662_at AI043759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043759 /DB_XREF=gi:3290494 /DB_XREF=UI-R-C0-jm-c-07-0-UI.s1 /CLONE=UI-R-C0-jm-c-07-0-UI /FEA=EST /CNT=5 /TID=Rn.18715.1 /TIER=ConsEnd /STK=0 /UG=Rn.18715 /UG_TITLE=ESTs, Weakly similar to FIBA RAT FIBRINOGEN ALPHAALPHA-E CHAIN PRECURSOR (R.norvegicus) AI043759 hypothetical protein LOC500956 LOC500956 500956 NM_001025054 1383663_at AI044443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044443 /DB_XREF=gi:3290794 /DB_XREF=UI-R-C1-js-g-01-0-UI.s1 /CLONE=UI-R-C1-js-g-01-0-UI /FEA=EST /CNT=5 /TID=Rn.18793.1 /TIER=ConsEnd /STK=0 /UG=Rn.18793 /UG_TITLE=ESTs AI044443 1383664_a_at AI172176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172176 /DB_XREF=gi:3712216 /DB_XREF=EST218171 /CLONE=RMUBV87 /FEA=EST /CNT=1 /TID=Rn.28818.2 /TIER=ConsEnd /STK=1 /UG=Rn.28818 /UG_TITLE=ESTs, Weakly similar to B0414.8.p (Caenorhabditis elegans) (C.elegans) AI172176 chromosome 11 open reading frame 2-like LOC100361915 100361915 XM_002728824 1383665_at BE096055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096055 /DB_XREF=gi:8486986 /DB_XREF=UI-R-BU0-apk-h-10-0-UI.s1 /CLONE=UI-R-BU0-apk-h-10-0-UI /FEA=EST /CNT=5 /TID=Rn.41006.1 /TIER=ConsEnd /STK=0 /UG=Rn.41006 /UG_TITLE=ESTs BE096055 lipin 2 Lpin2 316737 NM_001108236 0006629 // lipid metabolic process // not recorded /// 0016311 // dephosphorylation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005789 // endoplasmic reticulum membrane // not recorded /// 0005829 // cytosol // not recorded 0003713 // transcription coactivator activity // not recorded /// 0008195 // phosphatidate phosphatase activity // not recorded 1383666_at BG378435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378435 /DB_XREF=gi:13302872 /DB_XREF=UI-R-CU0-bvi-f-06-0-UI.s1 /CLONE=UI-R-CU0-bvi-f-06-0-UI /FEA=EST /CNT=5 /TID=Rn.48917.1 /TIER=ConsEnd /STK=0 /UG=Rn.48917 /UG_TITLE=ESTs, Weakly similar to S46683 hypothetical protein YHR189w - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BG378435 1383667_at AI603411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI603411 /DB_XREF=gi:4612572 /DB_XREF=UI-R-AC1-xu-a-09-0-UI.s1 /CLONE=UI-R-AC1-xu-a-09-0-UI /FEA=EST /CNT=5 /TID=Rn.934.1 /TIER=ConsEnd /STK=0 /UG=Rn.934 /UG_TITLE=ESTs AI603411 RUN domain containing 1 Rundc1 303552 XM_001081465 1383668_at AA997466 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997466 /DB_XREF=gi:4283794 /DB_XREF=UI-R-C0-hl-f-10-0-UI.s1 /CLONE=UI-R-C0-hl-f-10-0-UI /FEA=EST /CNT=5 /TID=Rn.12714.1 /TIER=ConsEnd /STK=0 /UG=Rn.12714 /UG_TITLE=ESTs AA997466 matrix metallopeptidase 15 Mmp15 291848 NM_001106168 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from expression pattern 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383669_at AI556424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556424 /DB_XREF=gi:4488787 /DB_XREF=UI-R-C2p-rh-d-10-0-UI.s1 /CLONE=UI-R-C2p-rh-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.18955.1 /TIER=ConsEnd /STK=0 /UG=Rn.18955 /UG_TITLE=ESTs AI556424 1383670_at BM383134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383134 /DB_XREF=gi:18183187 /DB_XREF=UI-R-DS0-cje-f-12-0-UI.s1 /CLONE=UI-R-DS0-cje-f-12-0-UI /FEA=EST /CNT=5 /TID=Rn.14863.1 /TIER=ConsEnd /STK=0 /UG=Rn.14863 /UG_TITLE=ESTs BM383134 zinc finger protein 426 Zfp426 690895 NM_001079943 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383671_at AI071724 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071724 /DB_XREF=gi:3397939 /DB_XREF=UI-R-C2-nc-g-10-0-UI.s1 /CLONE=UI-R-C2-nc-g-10-0-UI /FEA=EST /CNT=5 /TID=Rn.25221.1 /TIER=ConsEnd /STK=0 /UG=Rn.25221 /LL=57024 /UG_GENE=Adam9 /UG_TITLE=a disintegrin and metalloproteinase domain 9 (meltrin gamma) AI071724 ADAM metallopeptidase domain 9 (meltrin gamma) Adam9 290834 NM_001014772 0000186 // activation of MAPKK activity // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0007155 // cell adhesion // not recorded /// 0007160 // cell-matrix adhesion // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0010042 // response to manganese ion // not recorded /// 0030216 // keratinocyte differentiation // not recorded /// 0033627 // cell adhesion mediated by integrin // not recorded /// 0033630 // positive regulation of cell adhesion mediated by integrin // not recorded /// 0033631 // cell-cell adhesion mediated by integrin // not recorded /// 0034241 // positive regulation of macrophage fusion // not recorded /// 0034612 // response to tumor necrosis factor // not recorded /// 0034616 // response to laminar fluid shear stress // inferred from expression pattern /// 0042117 // monocyte activation // not recorded /// 0042542 // response to hydrogen peroxide // not recorded /// 0043526 // neuroprotection // inferred from expression pattern /// 0050714 // positive regulation of protein secretion // not recorded /// 0051044 // positive regulation of membrane protein ectodomain proteolysis // inferred from electronic annotation /// 0051044 // positive regulation of membrane protein ectodomain proteolysis // not recorded /// 0051088 // PMA-inducible membrane protein ectodomain proteolysis // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // not recorded /// 0051549 // positive regulation of keratinocyte migration // not recorded /// 0051592 // response to calcium ion // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0031233 // intrinsic to external side of plasma membrane // inferred from electronic annotation /// 0031233 // intrinsic to external side of plasma membrane // not recorded 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // not recorded /// 0005080 // protein kinase C binding // inferred from electronic annotation /// 0005080 // protein kinase C binding // not recorded /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005518 // collagen binding // not recorded /// 0008237 // metallopeptidase activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded /// 0043236 // laminin binding // not recorded 1383672_at AI716973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716973 /DB_XREF=gi:5034229 /DB_XREF=UI-R-Y0-acl-d-10-0-UI.s1 /CLONE=UI-R-Y0-acl-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.22479.2 /TIER=ConsEnd /STK=0 /UG=Rn.22479 /UG_TITLE=ESTs AI716973 1383673_at BI288925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288925 /DB_XREF=gi:14945976 /DB_XREF=UI-R-DK0-cdi-b-11-0-UI.s1 /CLONE=UI-R-DK0-cdi-b-11-0-UI /FEA=EST /CNT=5 /TID=Rn.43670.1 /TIER=ConsEnd /STK=0 /UG=Rn.43670 /UG_TITLE=ESTs, Highly similar to NPL2 MOUSE NUCLEOSOME ASSEMBLY PROTEIN 1-LIKE 2 (M.musculus) BI288925 nucleosome assembly protein 1-like 2 Nap1l2 317247 NM_001024789 0006334 // nucleosome assembly // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1383674_at BF419619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419619 /DB_XREF=gi:11407608 /DB_XREF=UI-R-CA0-bpe-c-08-0-UI.s1 /CLONE=UI-R-CA0-bpe-c-08-0-UI /FEA=EST /CNT=5 /TID=Rn.9142.1 /TIER=ConsEnd /STK=0 /UG=Rn.9142 /UG_TITLE=ESTs BF419619 transmembrane protein 219 Tmem219 308986 XM_001080074 /// XM_219337 1383675_at BG371620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371620 /DB_XREF=gi:13268157 /DB_XREF=UI-R-CW0-bvx-f-09-0-UI.s1 /CLONE=UI-R-CW0-bvx-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.41958.1 /TIER=ConsEnd /STK=0 /UG=Rn.41958 /UG_TITLE=ESTs, Moderately similar to T00356 hypothetical protein KIAA0690 (H.sapiens) BG371620 similar to Protein KIAA0690 LOC679127 679127 XM_001054805 1383676_at AA996595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996595 /DB_XREF=gi:4280362 /DB_XREF=UI-R-C0-hd-f-09-0-UI.s1 /CLONE=UI-R-C0-hd-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.12338.1 /TIER=ConsEnd /STK=0 /UG=Rn.12338 /UG_TITLE=ESTs, Highly similar to SFR8_HUMAN SPLICING FACTOR, ARGININESERINE-RICH 8 (H.sapiens) AA996595 splicing factor, arginine/serine-rich 8 Sfrs8 304431 NM_001034924 0006396 // RNA processing // inferred from electronic annotation /// 0007010 // cytoskeleton organization // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction 1383677_at AA925701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925701 /DB_XREF=gi:4236892 /DB_XREF=UI-R-A1-ec-b-06-0-UI.s1 /CLONE=UI-R-A1-ec-b-06-0-UI /FEA=EST /CNT=5 /TID=Rn.31912.1 /TIER=ConsEnd /STK=0 /UG=Rn.31912 /UG_TITLE=ESTs AA925701 ring finger protein 168 Rnf168 690043 NM_001127597 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // inferred from sequence or structural similarity /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010212 // response to ionizing radiation // inferred from sequence or structural similarity /// 0010212 // response to ionizing radiation // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0045739 // positive regulation of DNA repair // inferred from sequence or structural similarity /// 0045739 // positive regulation of DNA repair // inferred from electronic annotation /// 0070535 // histone H2A K63-linked ubiquitination // inferred from sequence or structural similarity /// 0070535 // histone H2A K63-linked ubiquitination // inferred from electronic annotation 0000151 // ubiquitin ligase complex // inferred from sequence or structural similarity /// 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0042393 // histone binding // inferred from sequence or structural similarity /// 0042393 // histone binding // inferred from electronic annotation /// 0043130 // ubiquitin binding // inferred from sequence or structural similarity /// 0043130 // ubiquitin binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383678_at BE102294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102294 /DB_XREF=gi:8494393 /DB_XREF=UI-R-BT1-aqk-g-12-0-UI.s1 /CLONE=UI-R-BT1-aqk-g-12-0-UI /FEA=EST /CNT=5 /TID=Rn.49177.1 /TIER=ConsEnd /STK=0 /UG=Rn.49177 /UG_TITLE=ESTs BE102294 organic solute carrier partner 1 Oscp1 362595 NM_001029923 0006810 // transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0009925 // basal plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1383679_at BF411972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411972 /DB_XREF=gi:11399926 /DB_XREF=UI-R-BT1-bmx-c-06-0-UI.s1 /CLONE=UI-R-BT1-bmx-c-06-0-UI /FEA=EST /CNT=5 /TID=Rn.61963.1 /TIER=ConsEnd /STK=0 /UG=Rn.61963 /UG_TITLE=ESTs BF411972 ring finger protein 31 Rnf31 364386 NM_001108868 0000209 // protein polyubiquitination // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0050852 // T cell receptor signaling pathway // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0009898 // internal side of plasma membrane // inferred from electronic annotation /// 0009898 // internal side of plasma membrane // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383680_at BG376339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376339 /DB_XREF=gi:13300811 /DB_XREF=UI-R-CT0-buo-d-03-0-UI.s1 /CLONE=UI-R-CT0-buo-d-03-0-UI /FEA=EST /CNT=5 /TID=Rn.49053.1 /TIER=ConsEnd /STK=0 /UG=Rn.49053 /UG_TITLE=ESTs BG376339 transmembrane protein 132A Tmem132a 338474 NM_178021 0007420 // brain development // non-traceable author statement /// 0043069 // negative regulation of programmed cell death // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay 1383681_at BI289508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289508 /DB_XREF=gi:14947153 /DB_XREF=UI-R-DK0-cfh-h-07-0-UI.s1 /CLONE=UI-R-DK0-cfh-h-07-0-UI /FEA=EST /CNT=5 /TID=Rn.24848.1 /TIER=ConsEnd /STK=0 /UG=Rn.24848 /UG_TITLE=ESTs BI289508 1383682_at BG378133 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378133 /DB_XREF=gi:13302605 /DB_XREF=UI-R-CV1-bvo-d-03-0-UI.s1 /CLONE=UI-R-CV1-bvo-d-03-0-UI /FEA=EST /CNT=5 /TID=Rn.29933.1 /TIER=ConsEnd /STK=0 /UG=Rn.29933 /UG_TITLE=ESTs BG378133 1383683_at BI283222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283222 /DB_XREF=gi:14934754 /DB_XREF=UI-R-DD0-bzs-e-11-0-UI.s1 /CLONE=UI-R-DD0-bzs-e-11-0-UI /FEA=EST /CNT=5 /TID=Rn.62580.1 /TIER=ConsEnd /STK=0 /UG=Rn.62580 /UG_TITLE=ESTs BI283222 neurotensin receptor 1 Ntsr1 366274 NM_001108967 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0016492 // neurotensin receptor activity, G-protein coupled // inferred from electronic annotation 1383684_at BI288761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288761 /DB_XREF=gi:14945652 /DB_XREF=UI-R-DK0-cde-f-05-0-UI.s1 /CLONE=UI-R-DK0-cde-f-05-0-UI /FEA=EST /CNT=5 /TID=Rn.899.1 /TIER=ConsEnd /STK=0 /UG=Rn.899 /UG_TITLE=ESTs, Moderately similar to T08661 anti-silencing protein ASF1 homolog DKFZp547E2110.1 (H.sapiens) BI288761 ASF1 anti-silencing function 1 homolog B (S. cerevisiae) Asf1b 304648 NM_001107160 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006334 // nucleosome assembly // not recorded 0000785 // chromatin // inferred from electronic annotation /// 0000785 // chromatin // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042393 // histone binding // inferred from electronic annotation /// 0042393 // histone binding // not recorded 1383685_at BI276972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276972 /DB_XREF=gi:14922398 /DB_XREF=UI-R-CW0-bxo-f-06-0-UI.s1 /CLONE=UI-R-CW0-bxo-f-06-0-UI /FEA=EST /CNT=5 /TID=Rn.47600.1 /TIER=ConsEnd /STK=0 /UG=Rn.47600 /UG_TITLE=ESTs, Highly similar to BP28_HUMAN PROTEIN BAP28 (H.sapiens) BI276972 HEAT repeat containing 1 Heatr1 361262 NM_001108418 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383686_at BE111537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111537 /DB_XREF=gi:8503642 /DB_XREF=UI-R-BJ1-avc-a-01-0-UI.s1 /CLONE=UI-R-BJ1-avc-a-01-0-UI /FEA=EST /CNT=5 /TID=Rn.11188.1 /TIER=ConsEnd /STK=0 /UG=Rn.11188 /UG_TITLE=ESTs, Moderately similar to SNG1 RAT SYNAPTOGYRIN 1 (R.norvegicus) BE111537 synaptogyrin 1 Syngr1 29205 NM_019166 0006605 // protein targeting // inferred from direct assay /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // not recorded /// 0048172 // regulation of short-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048172 // regulation of short-term neuronal synaptic plasticity // not recorded 0008021 // synaptic vesicle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 1383687_at AW435306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435306 /DB_XREF=gi:6966613 /DB_XREF=UI-R-BJ0p-afc-a-04-0-UI.s1 /CLONE=UI-R-BJ0p-afc-a-04-0-UI /FEA=EST /CNT=5 /TID=Rn.17382.1 /TIER=ConsEnd /STK=0 /UG=Rn.17382 /UG_TITLE=ESTs AW435306 1383688_at BM383349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383349 /DB_XREF=gi:18183402 /DB_XREF=UI-R-DM1-cka-c-11-0-UI.s1 /CLONE=UI-R-DM1-cka-c-11-0-UI /FEA=EST /CNT=5 /TID=Rn.19587.1 /TIER=ConsEnd /STK=0 /UG=Rn.19587 /UG_TITLE=ESTs BM383349 1383689_at BM382871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM382871 /DB_XREF=gi:18182924 /DB_XREF=UI-R-BT1-bko-g-09-0-UI.s1 /CLONE=UI-R-BT1-bko-g-09-0-UI /FEA=EST /CNT=5 /TID=Rn.60790.1 /TIER=ConsEnd /STK=0 /UG=Rn.60790 /UG_TITLE=ESTs BM382871 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4 B4galt4 303923 NM_001012018 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0003945 // N-acetyllactosamine synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383690_at BE121288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121288 /DB_XREF=gi:8513393 /DB_XREF=UI-R-CA0-baw-b-09-0-UI.s1 /CLONE=UI-R-CA0-baw-b-09-0-UI /FEA=EST /CNT=5 /TID=Rn.50921.1 /TIER=ConsEnd /STK=0 /UG=Rn.50921 /UG_TITLE=ESTs, Weakly similar to ORNITHINE DECARBOXYLASE (R.norvegicus) BE121288 similar to ornithine decarboxylase-like protein RGD1564776 366473 NM_001014261 0006596 // polyamine biosynthetic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation 1383691_at BF415419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415419 /DB_XREF=gi:11403443 /DB_XREF=UI-R-CA1-bjz-a-08-0-UI.s1 /CLONE=UI-R-CA1-bjz-a-08-0-UI /FEA=EST /CNT=5 /TID=Rn.63083.1 /TIER=ConsEnd /STK=0 /UG=Rn.63083 /UG_TITLE=ESTs BF415419 1383692_at BG377830 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377830 /DB_XREF=gi:13302302 /DB_XREF=UI-R-CU0-bvf-f-09-0-UI.s1 /CLONE=UI-R-CU0-bvf-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.15238.1 /TIER=ConsEnd /STK=0 /UG=Rn.15238 /UG_TITLE=ESTs BG377830 PRELI domain containing 2 Prelid2 681037 XM_001060034 /// XM_002725332 0005739 // mitochondrion // not recorded 1383693_at AI070837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070837 /DB_XREF=gi:3397088 /DB_XREF=UI-R-C2-mv-e-03-0-UI.s1 /CLONE=UI-R-C2-mv-e-03-0-UI /FEA=EST /CNT=5 /TID=Rn.20079.1 /TIER=ConsEnd /STK=0 /UG=Rn.20079 /UG_TITLE=ESTs AI070837 Eph receptor B2 Ephb2 313633 NM_001127319 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0007612 // learning // inferred from electronic annotation /// 0007612 // learning // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0016310 // phosphorylation // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0021631 // optic nerve morphogenesis // inferred from electronic annotation /// 0021631 // optic nerve morphogenesis // not recorded /// 0021952 // central nervous system projection neuron axonogenesis // inferred from electronic annotation /// 0021952 // central nervous system projection neuron axonogenesis // not recorded /// 0031290 // retinal ganglion cell axon guidance // inferred from electronic annotation /// 0031290 // retinal ganglion cell axon guidance // not recorded /// 0048013 // ephrin receptor signaling pathway // inferred from electronic annotation /// 0048013 // ephrin receptor signaling pathway // not recorded /// 0048168 // regulation of neuronal synaptic plasticity // inferred from electronic annotation /// 0048168 // regulation of neuronal synaptic plasticity // not recorded /// 0048170 // positive regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048170 // positive regulation of long-term neuronal synaptic plasticity // not recorded /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // not recorded /// 0050770 // regulation of axonogenesis // not recorded /// 0050770 // regulation of axonogenesis // inferred from electronic annotation /// 0050771 // negative regulation of axonogenesis // inferred from electronic annotation /// 0050771 // negative regulation of axonogenesis // not recorded 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // not recorded /// 0005003 // ephrin receptor activity // inferred from electronic annotation /// 0005003 // ephrin receptor activity // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008046 // axon guidance receptor activity // inferred from electronic annotation /// 0008046 // axon guidance receptor activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1383694_at BI294688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294688 /DB_XREF=gi:14957387 /DB_XREF=UI-R-DK0-cen-h-08-0-UI.s1 /CLONE=UI-R-DK0-cen-h-08-0-UI /FEA=EST /CNT=5 /TID=Rn.34661.1 /TIER=ConsEnd /STK=0 /UG=Rn.34661 /UG_TITLE=ESTs BI294688 ring finger protein 208 Rnf208 499748 NM_001109195 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383695_at BI301509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301509 /DB_XREF=gi:14977789 /DB_XREF=UI-R-DN0-cit-c-06-0-UI.s1 /CLONE=UI-R-DN0-cit-c-06-0-UI /FEA=EST /CNT=5 /TID=Rn.11756.1 /TIER=ConsEnd /STK=0 /UG=Rn.11756 /UG_TITLE=ESTs BI301509 vasoactive intestinal peptide receptor 1 Vipr1 24875 NM_012685 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004999 // vasoactive intestinal polypeptide receptor activity // inferred from direct assay /// 0004999 // vasoactive intestinal polypeptide receptor activity // inferred from electronic annotation 1383696_at AW525428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525428 /DB_XREF=gi:7167813 /DB_XREF=UI-R-BJ0p-ait-e-10-0-UI.s1 /CLONE=UI-R-BJ0p-ait-e-10-0-UI /FEA=EST /CNT=5 /TID=Rn.38334.2 /TIER=ConsEnd /STK=0 /UG=Rn.38334 /UG_TITLE=ESTs, Weakly similar to T15B7.2.p (Caenorhabditis elegans) (C.elegans) AW525428 protein tyrosine phosphatase-like (proline instead of catalytic arginine), member a Ptpla 680115 NM_001101001 1383697_at AW530905 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530905 /DB_XREF=gi:7173319 /DB_XREF=UI-R-BT1-aks-g-08-0-UI.s1 /CLONE=UI-R-BT1-aks-g-08-0-UI /FEA=EST /CNT=5 /TID=Rn.13290.1 /TIER=ConsEnd /STK=0 /UG=Rn.13290 /UG_TITLE=ESTs AW530905 1383698_at BF561717 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561717 /DB_XREF=gi:11671447 /DB_XREF=UI-R-C0-ic-c-11-0-UI.r1 /CLONE=UI-R-C0-ic-c-11-0-UI /FEA=EST /CNT=8 /TID=Rn.46003.1 /TIER=ConsEnd /STK=0 /UG=Rn.46003 /UG_TITLE=ESTs, Highly similar to ODPA RAT PYRUVATE DEHYDROGENASE E1 COMPONENT ALPHA SUBUNIT, SOMATIC FORM, MITOCHONDRIAL PRECURSOR (R.norvegicus) BF561717 pyruvate dehydrogenase (lipoamide) alpha 1 Pdha1 29554 NM_001004072 0006086 // acetyl-CoA biosynthetic process from pyruvate // inferred from direct assay /// 0006096 // glycolysis // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0010510 // regulation of acetyl-CoA biosynthetic process from pyruvate // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005967 // mitochondrial pyruvate dehydrogenase complex // traceable author statement /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0045254 // pyruvate dehydrogenase complex // inferred from direct assay 0004738 // pyruvate dehydrogenase activity // not recorded /// 0004739 // pyruvate dehydrogenase (acetyl-transferring) activity // inferred from direct assay /// 0004739 // pyruvate dehydrogenase (acetyl-transferring) activity // traceable author statement /// 0004739 // pyruvate dehydrogenase (acetyl-transferring) activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016624 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor // inferred from electronic annotation 1383699_at BG673521 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG673521 /DB_XREF=gi:13895620 /DB_XREF=DRNCEH11 /CLONE=DRNCEH11 /FEA=EST /CNT=8 /TID=Rn.28164.1 /TIER=ConsEnd /STK=0 /UG=Rn.28164 /UG_TITLE=ESTs, Weakly similar to TRANSFORMING PROTEIN P21K-RAS 2B (R.norvegicus) BG673521 Ras-like without CAAX 2 Rit2 291713 NM_001013060 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1383700_at AA965075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965075 /DB_XREF=gi:4279949 /DB_XREF=UI-R-C0-gz-a-07-0-UI.s1 /CLONE=UI-R-C0-gz-a-07-0-UI /FEA=EST /CNT=8 /TID=Rn.12134.1 /TIER=ConsEnd /STK=0 /UG=Rn.12134 /UG_TITLE=ESTs AA965075 PPPDE peptidase domain containing 2 Pppde2 315160 NM_001025703 1383701_at BM385937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385937 /DB_XREF=gi:18185990 /DB_XREF=UI-R-DN1-ckf-o-01-0-UI.s1 /CLONE=UI-R-DN1-ckf-o-01-0-UI /FEA=EST /CNT=7 /TID=Rn.18848.1 /TIER=ConsEnd /STK=0 /UG=Rn.18848 /UG_TITLE=ESTs BM385937 Mitogen activated protein kinase kinase 4 Map2k4 287398 NM_001030023 0000165 // MAPKKK cascade // not recorded /// 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007254 // JNK cascade // inferred from direct assay /// 0007257 // activation of JUN kinase activity // inferred from direct assay /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0045740 // positive regulation of DNA replication // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0032839 // dendrite cytoplasm // inferred from direct assay /// 0033267 // axon part // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004708 // MAP kinase kinase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008545 // JUN kinase kinase activity // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from physical interaction 1383702_at AW534301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534301 /DB_XREF=gi:7176715 /DB_XREF=UI-R-BS0-anu-f-09-0-UI.s1 /CLONE=UI-R-BS0-anu-f-09-0-UI /FEA=EST /CNT=7 /TID=Rn.44600.1 /TIER=ConsEnd /STK=0 /UG=Rn.44600 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) AW534301 1383703_at BE109151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109151 /DB_XREF=gi:8501256 /DB_XREF=UI-R-BS1-azb-e-06-0-UI.s1 /CLONE=UI-R-BS1-azb-e-06-0-UI /FEA=EST /CNT=7 /TID=Rn.18924.1 /TIER=ConsEnd /STK=0 /UG=Rn.18924 /UG_TITLE=ESTs BE109151 1383704_at BF410844 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410844 /DB_XREF=gi:11398819 /DB_XREF=UI-R-CN0-bml-f-10-0-UI.s1 /CLONE=UI-R-CN0-bml-f-10-0-UI /FEA=EST /CNT=7 /TID=Rn.45834.1 /TIER=ConsEnd /STK=0 /UG=Rn.45834 /UG_TITLE=ESTs, Weakly similar to ACTB_HUMAN ACTIN, CYTOPLASMIC 1 (R.norvegicus) BF410844 ARP3 actin-related protein 3 homolog B (yeast) Actr3b 362298 NM_001191860 /// XM_001058018 /// XM_342611 0030833 // regulation of actin filament polymerization // inferred from electronic annotation 0005856 // cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1383705_at BG670702 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670702 /DB_XREF=gi:13892801 /DB_XREF=DRNBED07 /CLONE=DRNBED07 /FEA=EST /CNT=6 /TID=Rn.21474.1 /TIER=ConsEnd /STK=0 /UG=Rn.21474 /UG_TITLE=ESTs BG670702 1383706_at BF409331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409331 /DB_XREF=gi:11397306 /DB_XREF=UI-R-CA1-ble-g-10-0-UI.s1 /CLONE=UI-R-CA1-ble-g-10-0-UI /FEA=EST /CNT=6 /TID=Rn.27543.1 /TIER=ConsEnd /STK=0 /UG=Rn.27543 /UG_TITLE=ESTs BF409331 similar to RIKEN cDNA 2900011O08 RGD1305733 360459 NM_001014114 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383707_at BE101725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101725 /DB_XREF=gi:8493823 /DB_XREF=UI-R-BO1-aps-e-11-0-UI.s1 /CLONE=UI-R-BO1-aps-e-11-0-UI /FEA=EST /CNT=6 /TID=Rn.49299.1 /TIER=ConsEnd /STK=0 /UG=Rn.49299 /UG_TITLE=ESTs BE101725 glutamate receptor, ionotropic, AMPA4 Gria4 29629 NM_001113184 /// NM_001113185 /// NM_017263 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from mutant phenotype /// 0007268 // synaptic transmission // traceable author statement /// 0050803 // regulation of synapse structure and activity // traceable author statement /// 0050804 // regulation of synaptic transmission // inferred from mutant phenotype /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype /// 0060992 // response to fungicide // inferred from expression pattern 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008328 // ionotropic glutamate receptor complex // traceable author statement /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0030425 // dendrite // inferred from mutant phenotype /// 0030666 // endocytic vesicle membrane // not recorded /// 0032281 // alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex // inferred from electronic annotation /// 0032281 // alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex // not recorded /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0045202 // synapse // inferred from mutant phenotype /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0004971 // alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity // inferred from mutant phenotype /// 0004971 // alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity // traceable author statement /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383708_at BI303923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303923 /DB_XREF=gi:14980203 /DB_XREF=UI-R-DR0-cjb-l-20-0-UI.s1 /CLONE=UI-R-DR0-cjb-l-20-0-UI /FEA=EST /CNT=6 /TID=Rn.12893.1 /TIER=ConsEnd /STK=0 /UG=Rn.12893 /UG_TITLE=ESTs BI303923 integrin, beta-like 1 Itgbl1 498564 NM_001017505 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0008305 // integrin complex // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1383709_at AW144630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144630 /DB_XREF=gi:6164529 /DB_XREF=EST295008 /CLONE=RGIBV28 /FEA=EST /CNT=6 /TID=Rn.15062.1 /TIER=ConsEnd /STK=0 /UG=Rn.15062 /UG_TITLE=ESTs AW144630 1383710_at BE098872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098872 /DB_XREF=gi:8490743 /DB_XREF=UI-R-BJ1-ate-g-10-0-UI.s1 /CLONE=UI-R-BJ1-ate-g-10-0-UI /FEA=EST /CNT=6 /TID=Rn.6591.1 /TIER=ConsEnd /STK=0 /UG=Rn.6591 /UG_TITLE=ESTs, Weakly similar to T17281 hypothetical protein DKFZp434I1735.1 (H.sapiens) BE098872 HEAT repeat containing 5B Heatr5b 362683 NM_001191064 /// XM_001053592 /// XM_002726676 0005488 // binding // inferred from electronic annotation 1383711_at BE126380 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE126380 /DB_XREF=gi:8548949 /DB_XREF=DEPA0023 /FEA=EST /CNT=6 /TID=Rn.21328.1 /TIER=ConsEnd /STK=0 /UG=Rn.21328 /UG_TITLE=ESTs, Highly similar to NMT1 MOUSE GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE 1 (M.musculus) BE126380 N-myristoyltransferase 1 Nmt1 259274 NM_148891 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006499 // N-terminal protein myristoylation // inferred from electronic annotation /// 0006499 // N-terminal protein myristoylation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004379 // glycylpeptide N-tetradecanoyltransferase activity // inferred from electronic annotation /// 0004379 // glycylpeptide N-tetradecanoyltransferase activity // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019107 // myristoyltransferase activity // inferred from direct assay /// 0019107 // myristoyltransferase activity // not recorded 1383712_at BF524281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF524281 /DB_XREF=gi:11632248 /DB_XREF=UI-R-AG0-xa-d-02-0-UI.r1 /CLONE=UI-R-AG0-xa-d-02-0-UI /FEA=EST /CNT=6 /TID=Rn.25244.1 /TIER=ConsEnd /STK=0 /UG=Rn.25244 /UG_TITLE=ESTs BF524281 1383713_at BM389843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389843 /DB_XREF=gi:18189896 /DB_XREF=UI-R-CN1-cjp-n-15-0-UI.s1 /CLONE=UI-R-CN1-cjp-n-15-0-UI /FEA=EST /CNT=6 /TID=Rn.32293.1 /TIER=ConsEnd /STK=0 /UG=Rn.32293 /UG_TITLE=ESTs BM389843 similar to CG9967-PA, isoform A LOC678910 678910 XM_001053761 1383714_at H32348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H32348 /DB_XREF=gi:977765 /DB_XREF=EST107339 /CLONE=RPCBT65 /FEA=EST /CNT=5 /TID=Rn.42064.1 /TIER=ConsEnd /STK=0 /UG=Rn.42064 /UG_TITLE=ESTs H32348 similar to expressed sequence AW549877 RGD1305938 310362 NM_001134548 1383715_at BI284371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284371 /DB_XREF=gi:14936989 /DB_XREF=UI-R-CX0s-cco-d-03-0-UI.s1 /CLONE=UI-R-CX0s-cco-d-03-0-UI /FEA=EST /CNT=5 /TID=Rn.15584.1 /TIER=ConsEnd /STK=0 /UG=Rn.15584 /UG_TITLE=ESTs, Weakly similar to T31650 hypothetical protein Y57A10A.cc - Caenorhabditis elegans (C.elegans) BI284371 transmembrane protein 38B Tmem38b 362521 NM_001014191 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0015672 // monovalent inorganic cation transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation 1383716_at BF556301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556301 /DB_XREF=gi:11666031 /DB_XREF=UI-R-A1-en-d-10-0-UI.r1 /CLONE=UI-R-A1-en-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.53057.1 /TIER=ConsEnd /STK=0 /UG=Rn.53057 /UG_TITLE=ESTs BF556301 1383717_at BF281802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281802 /DB_XREF=gi:11212872 /DB_XREF=EST446393 /CLONE=RGIBB59 /FEA=EST /CNT=5 /TID=Rn.24274.1 /TIER=ConsEnd /STK=0 /UG=Rn.24274 /UG_TITLE=ESTs BF281802 pleckstrin homology domain containing, family H (with MyTH4 domain) member 2 Plekhh2 313866 NM_001191770 /// XM_002726670 /// XM_233830 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1383718_at AI011604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011604 /DB_XREF=gi:4133456 /DB_XREF=EST206055 /CLONE=ROVAX23 /FEA=EST /CNT=5 /TID=Rn.24963.1 /TIER=ConsEnd /STK=0 /UG=Rn.24963 /UG_TITLE=ESTs AI011604 C-terminal binding protein 2 Ctbp2 81717 NM_053335 0006350 // transcription // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0050872 // white fat cell differentiation // not recorded /// 0050872 // white fat cell differentiation // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // not recorded /// 0017053 // transcriptional repressor complex // inferred from sequence or structural similarity /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0003714 // transcription corepressor activity // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation 1383719_at AW531489 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531489 /DB_XREF=gi:7173903 /DB_XREF=UI-R-BO1-aji-f-01-0-UI.s1 /CLONE=UI-R-BO1-aji-f-01-0-UI /FEA=EST /CNT=5 /TID=Rn.23807.2 /TIER=ConsEnd /STK=0 /UG=Rn.23807 /UG_TITLE=ESTs, Moderately similar to I37356 epithelial microtubule-associated protein, 115K (H.sapiens) AW531489 microtubule-associated protein 7 Map7 293016 NM_001106270 /// NM_001198638 0000902 // cell morphogenesis // not recorded /// 0001578 // microtubule bundle formation // not recorded /// 0006687 // glycosphingolipid metabolic process // not recorded /// 0006970 // response to osmotic stress // not recorded /// 0006997 // nucleus organization // not recorded /// 0007281 // germ cell development // not recorded /// 0007283 // spermatogenesis // not recorded /// 0008283 // cell proliferation // not recorded /// 0009566 // fertilization // not recorded /// 0032526 // response to retinoic acid // not recorded /// 0033327 // Leydig cell differentiation // not recorded /// 0035265 // organ growth // not recorded /// 0048872 // homeostasis of number of cells // not recorded /// 0060009 // Sertoli cell development // not recorded 0005886 // plasma membrane // not recorded 0005515 // protein binding // not recorded 1383720_at AW527404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527404 /DB_XREF=gi:7169818 /DB_XREF=UI-R-BO1-ajt-a-04-0-UI.s1 /CLONE=UI-R-BO1-ajt-a-04-0-UI /FEA=EST /CNT=5 /TID=Rn.29021.1 /TIER=ConsEnd /STK=0 /UG=Rn.29021 /UG_TITLE=ESTs AW527404 ubiquitously transcribed tetratricopeptide repeat, X chromosome Utx 100310845 XM_002727525 /// XM_002727526 /// XM_002727527 /// XM_002727528 /// XM_002727529 /// XM_002730185 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005488 // binding // inferred from electronic annotation 1383721_at AI556075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556075 /DB_XREF=gi:4488438 /DB_XREF=UI-R-C2p-rb-a-03-0-UI.s1 /CLONE=UI-R-C2p-rb-a-03-0-UI /FEA=EST /CNT=5 /TID=Rn.54930.1 /TIER=ConsEnd /STK=0 /UG=Rn.54930 /UG_TITLE=ESTs AI556075 frizzled homolog 8 (Drosophila) Fzd8 364754 NM_001044251 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0033077 // T cell differentiation in thymus // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017147 // Wnt-protein binding // inferred from electronic annotation /// 0017147 // Wnt-protein binding // not recorded /// 0042813 // Wnt receptor activity // inferred from electronic annotation /// 0042813 // Wnt receptor activity // not recorded 1383722_at H33436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33436 /DB_XREF=gi:978853 /DB_XREF=EST109438 /CLONE=RPNAR68 /FEA=EST /CNT=5 /TID=Rn.40789.1 /TIER=ConsEnd /STK=0 /UG=Rn.40789 /UG_TITLE=ESTs, Highly similar to POSC_MOUSE PROLINE SYNTHETASE CO-TRANSCRIBED BACTERIAL HOMOLOG PROTEIN (M.musculus) H33436 proline synthetase co-transcribed homolog (bacterial) Prosc 306544 NM_001107320 0005622 // intracellular // not recorded /// 0005739 // mitochondrion // not recorded 1383723_at BF418837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418837 /DB_XREF=gi:11406826 /DB_XREF=UI-R-BJ2-bqj-e-07-0-UI.s1 /CLONE=UI-R-BJ2-bqj-e-07-0-UI /FEA=EST /CNT=5 /TID=Rn.21850.1 /TIER=ConsEnd /STK=0 /UG=Rn.21850 /UG_TITLE=ESTs BF418837 1383724_at BG664685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664685 /DB_XREF=gi:13886607 /DB_XREF=DRABHF03 /CLONE=DRABHF03 /FEA=EST /CNT=5 /TID=Rn.15382.1 /TIER=ConsEnd /STK=0 /UG=Rn.15382 /UG_TITLE=ESTs BG664685 heparan sulfate 2-O-sulfotransferase 1 Hs2st1 292155 NM_001100518 0015014 // heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process // inferred from electronic annotation /// 0015014 // heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process // not recorded /// 0016051 // carbohydrate biosynthetic process // inferred from electronic annotation /// 0030202 // heparin metabolic process // inferred from electronic annotation /// 0030202 // heparin metabolic process // not recorded /// 0060676 // ureteric bud formation // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0004394 // heparan sulfate 2-O-sulfotransferase activity // inferred from electronic annotation /// 0004394 // heparan sulfate 2-O-sulfotransferase activity // not recorded /// 0008146 // sulfotransferase activity // inferred from electronic annotation 1383725_at BF552175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552175 /DB_XREF=gi:11661905 /DB_XREF=UI-R-C1-ll-b-05-0-UI.r1 /CLONE=UI-R-C1-ll-b-05-0-UI /FEA=EST /CNT=5 /TID=Rn.38519.2 /TIER=ConsEnd /STK=0 /UG=Rn.38519 /UG_TITLE=ESTs BF552175 hypothetical protein LOC100192314 LOC100192314 100192314 NM_001136272 1383726_at BG669800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669800 /DB_XREF=gi:13891722 /DB_XREF=DRNAAKD09 /CLONE=DRNAAKD09 /FEA=EST /CNT=5 /TID=Rn.50891.1 /TIER=ConsEnd /STK=0 /UG=Rn.50891 /UG_TITLE=ESTs BG669800 regulator of G-protein signaling 7 binding protein Rgs7bp 294715 NM_001012347 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383727_at BF564921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564921 /DB_XREF=gi:11674651 /DB_XREF=UI-R-BU0-ana-h-08-0-UI.r1 /CLONE=UI-R-BU0-ana-h-08-0-UI /FEA=EST /CNT=5 /TID=Rn.18163.1 /TIER=ConsEnd /STK=0 /UG=Rn.18163 /UG_TITLE=ESTs BF564921 1383728_at BM387529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387529 /DB_XREF=gi:18187582 /DB_XREF=UI-R-CN1-cjl-e-12-0-UI.s1 /CLONE=UI-R-CN1-cjl-e-12-0-UI /FEA=EST /CNT=5 /TID=Rn.16428.1 /TIER=ConsEnd /STK=0 /UG=Rn.16428 /UG_TITLE=ESTs BM387529 similar to NMDA receptor regulated 1-like LOC686240 686240 XM_001073064 0005488 // binding // inferred from electronic annotation 1383729_at BE114522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114522 /DB_XREF=gi:8506627 /DB_XREF=UI-R-BJ1-awm-b-06-0-UI.s1 /CLONE=UI-R-BJ1-awm-b-06-0-UI /FEA=EST /CNT=5 /TID=Rn.46012.1 /TIER=ConsEnd /STK=0 /UG=Rn.46012 /UG_TITLE=ESTs BE114522 E2F1-inducible gene LOC303566 303566 NM_001017988 1383730_at BG668930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668930 /DB_XREF=gi:13890852 /DB_XREF=DRN03C11 /CLONE=DRN03C11 /FEA=EST /CNT=5 /TID=Rn.40533.1 /TIER=ConsEnd /STK=0 /UG=Rn.40533 /UG_TITLE=ESTs BG668930 1383731_at AA818065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818065 /DB_XREF=gi:4198584 /DB_XREF=UI-R-A0-ag-a-10-0-UI.s2 /CLONE=UI-R-A0-ag-a-10-0-UI /FEA=EST /CNT=5 /TID=Rn.16444.1 /TIER=ConsEnd /STK=0 /UG=Rn.16444 /UG_TITLE=ESTs AA818065 transmembrane protein 106B Tmem106b 312132 NM_001004267 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1383732_at AA819810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819810 /DB_XREF=gi:4228065 /DB_XREF=UI-R-A0-aq-g-08-0-UI.s1 /CLONE=UI-R-A0-aq-g-08-0-UI /FEA=EST /CNT=5 /TID=Rn.16668.1 /TIER=ConsEnd /STK=0 /UG=Rn.16668 /UG_TITLE=ESTs, Weakly similar to GTP RAT GLUTATHIONE S-TRANSFERASE P (R.norvegicus) AA819810 similar to hypothetical protein MGC37914 RGD1307603 293656 NM_001134508 0008152 // metabolic process // inferred from electronic annotation 0004364 // glutathione transferase activity // inferred from electronic annotation 1383733_at BF555825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555825 /DB_XREF=gi:11665555 /DB_XREF=UI-R-A1-el-f-11-0-UI.r1 /CLONE=UI-R-A1-el-f-11-0-UI /FEA=EST /CNT=5 /TID=Rn.55699.1 /TIER=ConsEnd /STK=0 /UG=Rn.55699 /UG_TITLE=ESTs BF555825 Adenylate kinase 3 Ak3 26956 NM_013218 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006756 // AMP phosphorylation // inferred from direct assay /// 0009165 // nucleotide biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004017 // adenylate kinase activity // inferred from direct assay /// 0004017 // adenylate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016776 // phosphotransferase activity, phosphate group as acceptor // inferred from electronic annotation /// 0019201 // nucleotide kinase activity // inferred from electronic annotation /// 0019205 // nucleobase, nucleoside, nucleotide kinase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay /// 0046899 // nucleoside triphosphate adenylate kinase activity // inferred from electronic annotation 1383734_at AA859909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859909 /DB_XREF=gi:4230445 /DB_XREF=UI-R-E0-cg-b-02-0-UI.s1 /CLONE=UI-R-E0-cg-b-02-0-UI /FEA=EST /CNT=5 /TID=Rn.815.1 /TIER=ConsEnd /STK=0 /UG=Rn.815 /UG_TITLE=ESTs AA859909 1383735_at BI274202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274202 /DB_XREF=gi:14884898 /DB_XREF=UI-R-CW0-bwg-b-10-0-UI.s1 /CLONE=UI-R-CW0-bwg-b-10-0-UI /FEA=EST /CNT=5 /TID=Rn.20657.1 /TIER=ConsEnd /STK=0 /UG=Rn.20657 /UG_TITLE=ESTs BI274202 Fanconi anemia, complementation group L Fancl 305600 NM_001191684 /// XM_001064256 /// XM_223701 0007276 // gamete generation // not recorded /// 0042127 // regulation of cell proliferation // not recorded 0005634 // nucleus // not recorded /// 0005635 // nuclear envelope // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383736_at AI145457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145457 /DB_XREF=gi:3667256 /DB_XREF=UI-R-BT0-pv-f-11-0-UI.s1 /CLONE=UI-R-BT0-pv-f-11-0-UI /FEA=EST /CNT=5 /TID=Rn.28485.1 /TIER=ConsEnd /STK=0 /UG=Rn.28485 /UG_TITLE=ESTs AI145457 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) Elavl2 286973 NM_173309 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383737_at BM383406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383406 /DB_XREF=gi:18183459 /DB_XREF=UI-R-DM1-ckb-d-02-0-UI.s1 /CLONE=UI-R-DM1-ckb-d-02-0-UI /FEA=EST /CNT=5 /TID=Rn.17632.1 /TIER=ConsEnd /STK=0 /UG=Rn.17632 /UG_TITLE=ESTs BM383406 1383738_at BI302863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302863 /DB_XREF=gi:14979143 /DB_XREF=UI-R-DO0-cix-a-01-0-UI.s1 /CLONE=UI-R-DO0-cix-a-01-0-UI /FEA=EST /CNT=5 /TID=Rn.13583.1 /TIER=ConsEnd /STK=0 /UG=Rn.13583 /UG_TITLE=ESTs BI302863 centrosomal protein 68kDa Cep68 289822 XM_001059836 /// XM_214106 1383739_at BI288787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288787 /DB_XREF=gi:14945702 /DB_XREF=UI-R-DK0-cde-h-09-0-UI.s1 /CLONE=UI-R-DK0-cde-h-09-0-UI /FEA=EST /CNT=5 /TID=Rn.15335.1 /TIER=ConsEnd /STK=0 /UG=Rn.15335 /UG_TITLE=ESTs BI288787 1383740_at AI029740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029740 /DB_XREF=gi:4300644 /DB_XREF=UI-R-C0-jg-e-01-0-UI.s1 /CLONE=UI-R-C0-jg-e-01-0-UI /FEA=EST /CNT=5 /TID=Rn.16289.2 /TIER=ConsEnd /STK=0 /UG=Rn.16289 /UG_TITLE=ESTs AI029740 1383741_at BE100721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100721 /DB_XREF=gi:8492583 /DB_XREF=UI-R-BJ1-atu-c-02-0-UI.s1 /CLONE=UI-R-BJ1-atu-c-02-0-UI /FEA=EST /CNT=5 /TID=Rn.9410.1 /TIER=ConsEnd /STK=0 /UG=Rn.9410 /UG_TITLE=ESTs BE100721 1383742_at AA997003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997003 /DB_XREF=gi:4280767 /DB_XREF=UI-R-C0-ho-c-10-0-UI.s1 /CLONE=UI-R-C0-ho-c-10-0-UI /FEA=EST /CNT=5 /TID=Rn.29845.1 /TIER=ConsEnd /STK=0 /UG=Rn.29845 /UG_TITLE=ESTs, Moderately similar to T08691 hypothetical protein DKFZp564F052.1 (H.sapiens) AA997003 sorting nexin 7 Snx7 310815 NM_001012083 0007154 // cell communication // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1383743_at BI275464 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275464 /DB_XREF=gi:14887346 /DB_XREF=UI-R-CX0-bww-g-07-0-UI.s1 /CLONE=UI-R-CX0-bww-g-07-0-UI /FEA=EST /CNT=5 /TID=Rn.40387.1 /TIER=ConsEnd /STK=0 /UG=Rn.40387 /UG_TITLE=ESTs BI275464 leucine rich repeat containing 16A Lrrc16a 306941 NM_001191692 /// XM_001070748 /// XM_225336 1383744_at AI146250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146250 /DB_XREF=gi:3668049 /DB_XREF=UI-R-BT0-qh-f-09-0-UI.s1 /CLONE=UI-R-BT0-qh-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.25811.1 /TIER=ConsEnd /STK=0 /UG=Rn.25811 /UG_TITLE=ESTs AI146250 1383745_at AI548136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548136 /DB_XREF=gi:4465624 /DB_XREF=UI-R-C3-sm-g-03-0-UI.s1 /CLONE=UI-R-C3-sm-g-03-0-UI /FEA=EST /CNT=5 /TID=Rn.25216.1 /TIER=ConsEnd /STK=0 /UG=Rn.25216 /UG_TITLE=ESTs AI548136 1383746_at BE100881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100881 /DB_XREF=gi:8492782 /DB_XREF=UI-R-BJ1-atx-e-03-0-UI.s1 /CLONE=UI-R-BJ1-atx-e-03-0-UI /FEA=EST /CNT=5 /TID=Rn.46138.1 /TIER=ConsEnd /STK=0 /UG=Rn.46138 /UG_TITLE=ESTs, Highly similar to PTNE MOUSE PROTEIN TYROSINE PHOSPHATASE, NON-RECEPTOR TYPE 14 (M.musculus) BE100881 protein tyrosine phosphatase, non-receptor type 14 Ptpn14 305064 NM_001107200 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0005856 // cytoskeleton // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1383747_at AI578135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578135 /DB_XREF=gi:4562511 /DB_XREF=UI-R-Y0-uw-b-08-0-UI.s2 /CLONE=UI-R-Y0-uw-b-08-0-UI /FEA=EST /CNT=5 /TID=Rn.38704.1 /TIER=ConsEnd /STK=0 /UG=Rn.38704 /UG_TITLE=ESTs AI578135 epithelial cell transforming sequence 2 oncogene Ect2 361921 NM_001108547 0000902 // cell morphogenesis // not recorded /// 0006915 // apoptosis // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004871 // signal transducer activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017048 // Rho GTPase binding // not recorded 1383748_at H31483 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31483 /DB_XREF=gi:976900 /DB_XREF=EST105551 /CLONE=RPCAL28 /FEA=EST /CNT=5 /TID=Rn.56102.1 /TIER=ConsEnd /STK=0 /UG=Rn.56102 /UG_TITLE=ESTs H31483 NECAP endocytosis associated 2 Necap2 298598 NM_199096 0006810 // transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from sequence or structural similarity /// 0006897 // endocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005622 // intracellular // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0030125 // clathrin vesicle coat // not recorded /// 0030125 // clathrin vesicle coat // inferred from sequence or structural similarity /// 0030125 // clathrin vesicle coat // inferred from electronic annotation /// 0030665 // clathrin coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 1383749_at AI112954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112954 /DB_XREF=gi:3512903 /DB_XREF=UI-R-A1-et-d-12-0-UI.s1 /CLONE=UI-R-A1-et-d-12-0-UI /FEA=EST /CNT=5 /TID=Rn.25211.1 /TIER=ConsEnd /STK=0 /UG=Rn.25211 /UG_TITLE=ESTs AI112954 phosphatase, orphan 1 Phospho1 287644 NM_001105833 0008152 // metabolic process // inferred from electronic annotation 0016791 // phosphatase activity // inferred from electronic annotation 1383750_at BF418523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418523 /DB_XREF=gi:11406512 /DB_XREF=UI-R-BJ2-bqg-h-04-0-UI.s1 /CLONE=UI-R-BJ2-bqg-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.11467.1 /TIER=ConsEnd /STK=0 /UG=Rn.11467 /UG_TITLE=ESTs BF418523 1383751_at AI555007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555007 /DB_XREF=gi:4487370 /DB_XREF=UI-R-C2p-qu-g-06-0-UI.s1 /CLONE=UI-R-C2p-qu-g-06-0-UI /FEA=EST /CNT=5 /TID=Rn.19565.1 /TIER=ConsEnd /STK=0 /UG=Rn.19565 /UG_TITLE=ESTs AI555007 sorting nexin 8 Snx8 288504 NM_001105912 0007154 // cell communication // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1383752_at BG375714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375714 /DB_XREF=gi:13300186 /DB_XREF=UI-R-CS0-bte-e-09-0-UI.s1 /CLONE=UI-R-CS0-bte-e-09-0-UI /FEA=EST /CNT=5 /TID=Rn.32804.1 /TIER=ConsEnd /STK=0 /UG=Rn.32804 /UG_TITLE=ESTs, Weakly similar to A48998 nucleolar protein p120 - mouse (M.musculus) BG375714 NOP2 nucleolar protein homolog (yeast) Nop2 314969 NM_001191785 /// XM_001065060 /// XM_235295 0006364 // rRNA processing // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from electronic annotation 1383753_at BF401106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401106 /DB_XREF=gi:11389081 /DB_XREF=UI-R-CA0-bgh-f-11-0-UI.s1 /CLONE=UI-R-CA0-bgh-f-11-0-UI /FEA=EST /CNT=5 /TID=Rn.34165.1 /TIER=ConsEnd /STK=0 /UG=Rn.34165 /UG_TITLE=ESTs BF401106 1383754_at AI548342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548342 /DB_XREF=gi:4465830 /DB_XREF=UI-R-C3-td-b-06-0-UI.s1 /CLONE=UI-R-C3-td-b-06-0-UI /FEA=EST /CNT=5 /TID=Rn.24391.1 /TIER=ConsEnd /STK=0 /UG=Rn.24391 /UG_TITLE=ESTs AI548342 1383755_at AW918485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918485 /DB_XREF=gi:8084262 /DB_XREF=EST349789 /CLONE=RGIES89 /FEA=EST /CNT=4 /TID=Rn.11651.1 /TIER=ConsEnd /STK=0 /UG=Rn.11651 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) AW918485 FK506 binding protein 15 Fkbp15 362528 XM_001057312 /// XM_342846 0006457 // protein folding // inferred from electronic annotation 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005884 // actin filament // not recorded /// 0030424 // axon // not recorded /// 0030426 // growth cone // not recorded 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation 1383756_at AA998924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998924 /DB_XREF=gi:4292808 /DB_XREF=UI-R-C0-im-d-06-0-UI.s1 /CLONE=UI-R-C0-im-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.13217.1 /TIER=ConsEnd /STK=0 /UG=Rn.13217 /UG_TITLE=ESTs AA998924 1383757_at AI044802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044802 /DB_XREF=gi:3290865 /DB_XREF=UI-R-C1-jt-f-05-0-UI.s1 /CLONE=UI-R-C1-jt-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.20709.1 /TIER=ConsEnd /STK=0 /UG=Rn.20709 /UG_TITLE=ESTs AI044802 1383758_at AA924804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924804 /DB_XREF=gi:4235995 /DB_XREF=UI-R-A1-eg-e-02-0-UI.s1 /CLONE=UI-R-A1-eg-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.15398.1 /TIER=ConsEnd /STK=0 /UG=Rn.15398 /UG_TITLE=ESTs AA924804 1383759_at BF553179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF553179 /DB_XREF=gi:11662909 /DB_XREF=UI-R-C2-nj-d-11-0-UI.r1 /CLONE=UI-R-C2-nj-d-11-0-UI /FEA=EST /CNT=4 /TID=Rn.44061.2 /TIER=ConsEnd /STK=0 /UG=Rn.44061 /UG_TITLE=ESTs, Weakly similar to T33157 hypothetical protein F56H1.5 - Caenorhabditis elegans (C.elegans) BF553179 ATP/GTP binding protein 1 Agtpbp1 290986 NM_001106100 0006508 // proteolysis // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0021702 // cerebellar Purkinje cell differentiation // inferred from electronic annotation /// 0021702 // cerebellar Purkinje cell differentiation // not recorded /// 0042133 // neurotransmitter metabolic process // inferred from electronic annotation /// 0042133 // neurotransmitter metabolic process // not recorded /// 0050905 // neuromuscular process // inferred from electronic annotation /// 0050905 // neuromuscular process // not recorded 0000221 // vacuolar proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 1383760_at AI058665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058665 /DB_XREF=gi:3332442 /DB_XREF=UI-R-C1-kp-e-12-0-UI.s1 /CLONE=UI-R-C1-kp-e-12-0-UI /FEA=EST /CNT=4 /TID=Rn.18943.1 /TIER=ConsEnd /STK=0 /UG=Rn.18943 /UG_TITLE=ESTs AI058665 DPH3, KTI11 homolog (S. cerevisiae) Dph3 680594 NM_001134850 0050709 // negative regulation of protein secretion // not recorded /// 0051099 // positive regulation of binding // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded 1383761_at AA996729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996729 /DB_XREF=gi:4280495 /DB_XREF=UI-R-C0-hf-g-06-0-UI.s1 /CLONE=UI-R-C0-hf-g-06-0-UI /FEA=EST /CNT=4 /TID=Rn.6836.1 /TIER=ConsEnd /STK=0 /UG=Rn.6836 /UG_TITLE=ESTs AA996729 1383762_at BI274613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274613 /DB_XREF=gi:14885681 /DB_XREF=UI-R-CX0-bws-a-03-0-UI.s1 /CLONE=UI-R-CX0-bws-a-03-0-UI /FEA=EST /CNT=4 /TID=Rn.28508.1 /TIER=ConsEnd /STK=0 /UG=Rn.28508 /UG_TITLE=ESTs, Weakly similar to ZF94_RAT ZINC FINGER PROTEIN 94 (ZFP-94) (ZINC FINGER PROTEIN Y1) (RLZF-Y) (R.norvegicus) BI274613 similar to zinc finger protein ZFP RGD1565545 308337 NM_001134544 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1383763_at BF396631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396631 /DB_XREF=gi:11381606 /DB_XREF=UI-R-BS2-bea-d-01-0-UI.s1 /CLONE=UI-R-BS2-bea-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.16753.1 /TIER=ConsEnd /STK=0 /UG=Rn.16753 /UG_TITLE=ESTs BF396631 1383764_at BF567482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567482 /DB_XREF=gi:11677212 /DB_XREF=UI-R-BO0-aia-h-04-0-UI.r1 /CLONE=UI-R-BO0-aia-h-04-0-UI /FEA=EST /CNT=4 /TID=Rn.41048.2 /TIER=ConsEnd /STK=0 /UG=Rn.41048 /UG_TITLE=ESTs BF567482 cysteine-rich hydrophobic domain 2 Chic2 83835 NM_001105736 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005798 // Golgi-associated vesicle // inferred from electronic annotation /// 0005798 // Golgi-associated vesicle // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383765_at BI274834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274834 /DB_XREF=gi:14886116 /DB_XREF=UI-R-CX0-bxa-f-01-0-UI.s1 /CLONE=UI-R-CX0-bxa-f-01-0-UI /FEA=EST /CNT=4 /TID=Rn.80016.1 /TIER=ConsEnd /STK=0 /UG=Rn.80016 /UG_TITLE=ESTs BI274834 DMRT-like family C1a Dmrtc1a 501668 NM_001025288 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 1383766_at BG663338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663338 /DB_XREF=gi:13885260 /DB_XREF=DRAAAHB06 /CLONE=DRAAAHB06 /FEA=EST /CNT=4 /TID=Rn.39310.1 /TIER=ConsEnd /STK=0 /UG=Rn.39310 /UG_TITLE=ESTs BG663338 sarcoglycan, beta (dystrophin-associated glycoprotein) Sgcb 680229 NM_001191068 /// XM_001056227 /// XM_002724956 0007010 // cytoskeleton organization // inferred from electronic annotation 0016010 // dystrophin-associated glycoprotein complex // not recorded /// 0016012 // sarcoglycan complex // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1383767_at AW524430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524430 /DB_XREF=gi:7166815 /DB_XREF=UI-R-BO0-ahx-c-09-0-UI.s1 /CLONE=UI-R-BO0-ahx-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.876.1 /TIER=ConsEnd /STK=0 /UG=Rn.876 /UG_TITLE=ESTs AW524430 1383768_at BF563441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563441 /DB_XREF=gi:11673171 /DB_XREF=UI-R-BT1-aki-a-06-0-UI.r1 /CLONE=UI-R-BT1-aki-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.12662.1 /TIER=ConsEnd /STK=0 /UG=Rn.12662 /UG_TITLE=ESTs BF563441 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) Elavl2 286973 NM_173309 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383769_at BF398206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398206 /DB_XREF=gi:11383193 /DB_XREF=UI-R-BS2-ben-g-04-0-UI.s1 /CLONE=UI-R-BS2-ben-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.17486.1 /TIER=ConsEnd /STK=0 /UG=Rn.17486 /UG_TITLE=ESTs BF398206 1383770_at BE117323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117323 /DB_XREF=gi:8509428 /DB_XREF=UI-R-BS1-ayn-d-10-0-UI.s1 /CLONE=UI-R-BS1-ayn-d-10-0-UI /FEA=EST /CNT=4 /TID=Rn.23863.1 /TIER=ConsEnd /STK=0 /UG=Rn.23863 /UG_TITLE=ESTs BE117323 1383771_at BF545879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545879 /DB_XREF=gi:11636986 /DB_XREF=UI-R-BT0-qe-g-04-0-UI.r1 /CLONE=UI-R-BT0-qe-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.13928.1 /TIER=ConsEnd /STK=0 /UG=Rn.13928 /UG_TITLE=ESTs BF545879 ubiquitin specific peptidase 46 Usp46 289584 NM_001191596 /// XM_001068586 /// XM_214034 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007610 // behavior // not recorded /// 0016579 // protein deubiquitination // not recorded /// 0032228 // regulation of synaptic transmission, GABAergic // not recorded 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0005515 // protein binding // not recorded 1383772_at AA996760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996760 /DB_XREF=gi:4280524 /DB_XREF=UI-R-C0-hg-g-07-0-UI.s1 /CLONE=UI-R-C0-hg-g-07-0-UI /FEA=EST /CNT=4 /TID=Rn.11605.1 /TIER=ConsEnd /STK=0 /UG=Rn.11605 /UG_TITLE=ESTs AA996760 1383773_at AI136301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136301 /DB_XREF=gi:3637078 /DB_XREF=UI-R-C2p-oa-e-02-0-UI.s1 /CLONE=UI-R-C2p-oa-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.13732.1 /TIER=ConsEnd /STK=0 /UG=Rn.13732 /UG_TITLE=ESTs AI136301 1383774_at BG376677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376677 /DB_XREF=gi:13301149 /DB_XREF=UI-R-CU0-buq-f-04-0-UI.s1 /CLONE=UI-R-CU0-buq-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.48228.1 /TIER=ConsEnd /STK=0 /UG=Rn.48228 /UG_TITLE=ESTs BG376677 non-protein coding RNA 117 Ncrna00117 289864 NM_001106022 1383775_at BF386414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386414 /DB_XREF=gi:11371238 /DB_XREF=UI-R-CA1-bbd-c-03-0-UI.s1 /CLONE=UI-R-CA1-bbd-c-03-0-UI /FEA=EST /CNT=4 /TID=Rn.60768.1 /TIER=ConsEnd /STK=0 /UG=Rn.60768 /UG_TITLE=ESTs BF386414 1383776_at AW525120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525120 /DB_XREF=gi:7167505 /DB_XREF=UI-R-BJ0p-aio-a-06-0-UI.s1 /CLONE=UI-R-BJ0p-aio-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.35353.1 /TIER=ConsEnd /STK=0 /UG=Rn.35353 /UG_TITLE=ESTs AW525120 1383777_at BG666391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666391 /DB_XREF=gi:13888313 /DB_XREF=DRACLC04 /CLONE=DRACLC04 /FEA=EST /CNT=4 /TID=Rn.16235.1 /TIER=ConsEnd /STK=0 /UG=Rn.16235 /UG_TITLE=ESTs BG666391 1383778_at AW917920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917920 /DB_XREF=gi:8083683 /DB_XREF=EST349224 /CLONE=RGIEK12 /FEA=EST /CNT=4 /TID=Rn.24348.1 /TIER=ConsEnd /STK=0 /UG=Rn.24348 /UG_TITLE=ESTs AW917920 1383779_at BF566806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF566806 /DB_XREF=gi:11676536 /DB_XREF=UI-R-BJ0p-afm-f-09-0-UI.r1 /CLONE=UI-R-BJ0p-afm-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.72983.1 /TIER=ConsEnd /STK=0 /UG=Rn.72983 /UG_TITLE=ESTs, Weakly similar to NNP1 MOUSE NNP-1 PROTEIN (M.musculus) BF566806 ribosomal RNA processing 1 homolog B (S. cerevisiae) Rrp1b 309673 XM_001071108 /// XM_228076 0006364 // rRNA processing // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005829 // cytosol // not recorded /// 0030688 // preribosome, small subunit precursor // inferred from electronic annotation 0005515 // protein binding // not recorded 1383780_at BF563800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563800 /DB_XREF=gi:11673530 /DB_XREF=UI-R-BT1-aks-h-11-0-UI.r1 /CLONE=UI-R-BT1-aks-h-11-0-UI /FEA=EST /CNT=4 /TID=Rn.42953.1 /TIER=ConsEnd /STK=0 /UG=Rn.42953 /UG_TITLE=ESTs, Weakly similar to T14346 Herc2 protein - mouse (M.musculus) BF563800 HECT domain containing 1 Hectd1 362736 XM_001078686 /// XM_343060 0001843 // neural tube closure // not recorded /// 0006464 // protein modification process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383781_at BF559112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559112 /DB_XREF=gi:11668842 /DB_XREF=UI-R-C1-kw-f-11-0-UI.r1 /CLONE=UI-R-C1-kw-f-11-0-UI /FEA=EST /CNT=4 /TID=Rn.22893.1 /TIER=ConsEnd /STK=0 /UG=Rn.22893 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) BF559112 1383782_at AI144975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144975 /DB_XREF=gi:3666774 /DB_XREF=UI-R-BT0-po-c-12-0-UI.s1 /CLONE=UI-R-BT0-po-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.27755.1 /TIER=ConsEnd /STK=0 /UG=Rn.27755 /UG_TITLE=ESTs, Weakly similar to TERA RAT TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (R.norvegicus) AI144975 spastin Spast 362700 NM_001108702 0001578 // microtubule bundle formation // inferred from sequence or structural similarity /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from electronic annotation /// 0007109 // cytokinesis, completion of separation // inferred from sequence or structural similarity /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0034214 // protein hexamerization // inferred from sequence or structural similarity /// 0051013 // microtubule severing // inferred from sequence or structural similarity /// 0051260 // protein homooligomerization // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from sequence or structural similarity /// 0005768 // endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from sequence or structural similarity /// 0008568 // microtubule-severing ATPase activity // inferred from sequence or structural similarity /// 0008568 // microtubule-severing ATPase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0043014 // alpha-tubulin binding // inferred from sequence or structural similarity /// 0048487 // beta-tubulin binding // inferred from sequence or structural similarity 1383783_at AW521192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521192 /DB_XREF=gi:7163570 /DB_XREF=UI-R-BO0-agk-d-02-0-UI.s1 /CLONE=UI-R-BO0-agk-d-02-0-UI /FEA=EST /CNT=4 /TID=Rn.35614.1 /TIER=ConsEnd /STK=0 /UG=Rn.35614 /UG_TITLE=ESTs AW521192 protocadherin 9 Pcdh9 306091 NM_001191688 /// XM_001073608 /// XM_001073640 /// XM_001073680 /// XM_002728301 /// XM_002728302 /// XM_224429 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0030900 // forebrain development // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383784_at BI289438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289438 /DB_XREF=gi:14947009 /DB_XREF=UI-R-DK0-cfh-a-05-0-UI.s1 /CLONE=UI-R-DK0-cfh-a-05-0-UI /FEA=EST /CNT=4 /TID=Rn.9558.1 /TIER=ConsEnd /STK=0 /UG=Rn.9558 /UG_TITLE=ESTs BI289438 1383785_at BE115061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115061 /DB_XREF=gi:8507166 /DB_XREF=UI-R-BJ1-awu-g-08-0-UI.s1 /CLONE=UI-R-BJ1-awu-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.9639.1 /TIER=ConsEnd /STK=0 /UG=Rn.9639 /UG_TITLE=ESTs BE115061 Lymphoid enhancer binding factor 1 Lef1 161452 NM_130429 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001756 // somitogenesis // not recorded /// 0001822 // kidney development // inferred from expression pattern /// 0001837 // epithelial to mesenchymal transition // inferred from electronic annotation /// 0001837 // epithelial to mesenchymal transition // not recorded /// 0001944 // vasculature development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0007155 // cell adhesion // inferred from expression pattern /// 0010226 // response to lithium ion // inferred from expression pattern /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0021542 // dentate gyrus development // inferred from electronic annotation /// 0021542 // dentate gyrus development // not recorded /// 0021766 // hippocampus development // not recorded /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021987 // cerebral cortex development // not recorded /// 0030111 // regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030111 // regulation of Wnt receptor signaling pathway // not recorded /// 0030154 // cell differentiation // inferred from mutant phenotype /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030509 // BMP signaling pathway // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0030879 // mammary gland development // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0043586 // tongue development // not recorded /// 0043588 // skin development // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045843 // negative regulation of striated muscle tissue development // inferred from electronic annotation /// 0045843 // negative regulation of striated muscle tissue development // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048341 // paraxial mesoderm formation // inferred from electronic annotation /// 0048341 // paraxial mesoderm formation // not recorded /// 0048468 // cell development // inferred from electronic annotation /// 0048468 // cell development // not recorded /// 0050909 // sensory perception of taste // not recorded /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded /// 0060033 // anatomical structure regression // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060710 // chorio-allantoic fusion // inferred from electronic annotation /// 0060710 // chorio-allantoic fusion // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0032993 // protein-DNA complex // inferred from electronic annotation /// 0032993 // protein-DNA complex // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003704 // specific RNA polymerase II transcription factor activity // not recorded /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0008301 // DNA bending activity // not recorded /// 0008301 // DNA bending activity // inferred from sequence or structural similarity /// 0008301 // DNA bending activity // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0044212 // transcription regulatory region DNA binding // inferred from electronic annotation /// 0044212 // transcription regulatory region DNA binding // not recorded /// 0045295 // gamma-catenin binding // inferred from electronic annotation /// 0045295 // gamma-catenin binding // not recorded /// 0070016 // armadillo repeat domain binding // not recorded 1383786_at AW915417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915417 /DB_XREF=gi:8081113 /DB_XREF=EST346721 /CLONE=RGICV20 /FEA=EST /CNT=4 /TID=Rn.49241.1 /TIER=ConsEnd /STK=0 /UG=Rn.49241 /UG_TITLE=ESTs AW915417 RAB32, member RAS oncogene family Rab32 365042 NM_001108902 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1383787_at AI716912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716912 /DB_XREF=gi:5034168 /DB_XREF=UI-R-Y0-aci-f-09-0-UI.s1 /CLONE=UI-R-Y0-aci-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.39133.1 /TIER=ConsEnd /STK=0 /UG=Rn.39133 /UG_TITLE=ESTs AI716912 Popeye domain-containing 3 LOC641520 641520 NM_001037369 0016020 // membrane // inferred from electronic annotation 1383788_at AI453887 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI453887 /DB_XREF=gi:4289868 /DB_XREF=UI-R-BT0-pu-a-02-0-UI.s1 /CLONE=UI-R-BT0-pu-a-02-0-UI /FEA=EST /CNT=4 /TID=Rn.24644.1 /TIER=ConsEnd /STK=0 /UG=Rn.24644 /UG_TITLE=ESTs AI453887 1383789_at BE118099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118099 /DB_XREF=gi:8510204 /DB_XREF=UI-R-BS1-azn-f-07-0-UI.s1 /CLONE=UI-R-BS1-azn-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.18412.1 /TIER=ConsEnd /STK=0 /UG=Rn.18412 /UG_TITLE=ESTs BE118099 1383790_at BE105979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105979 /DB_XREF=gi:8498081 /DB_XREF=UI-R-BX0-asc-e-01-0-UI.s1 /CLONE=UI-R-BX0-asc-e-01-0-UI /FEA=EST /CNT=4 /TID=Rn.19174.1 /TIER=ConsEnd /STK=0 /UG=Rn.19174 /UG_TITLE=ESTs, Weakly similar to S21976 probable RNA-directed DNA polymerase (R.norvegicus) BE105979 1383791_at BG664616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664616 /DB_XREF=gi:13886538 /DB_XREF=DRABGC08 /CLONE=DRABGC08 /FEA=EST /CNT=4 /TID=Rn.13607.2 /TIER=ConsEnd /STK=0 /UG=Rn.13607 /UG_TITLE=ESTs, Weakly similar to S43603 RNA binding protein homolog R07E5.12 - Caenorhabditis elegans (C.elegans) BG664616 1383792_at BG378274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378274 /DB_XREF=gi:13302746 /DB_XREF=UI-R-CV1-bvq-b-05-0-UI.s1 /CLONE=UI-R-CV1-bvq-b-05-0-UI /FEA=EST /CNT=4 /TID=Rn.16862.1 /TIER=ConsEnd /STK=0 /UG=Rn.16862 /UG_TITLE=ESTs, Weakly similar to KPCG MOUSE PROTEIN KINASE C, GAMMA TYPE (R.norvegicus) BG378274 synaptotagmin-like 1 Sytl1 297872 NM_001025651 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006887 // exocytosis // not recorded /// 0016192 // vesicle-mediated transport // not recorded 0005624 // membrane fraction // not recorded /// 0005625 // soluble fraction // not recorded /// 0005886 // plasma membrane // not recorded /// 0019897 // extrinsic to plasma membrane // not recorded /// 0042470 // melanosome // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017137 // Rab GTPase binding // inferred from electronic annotation /// 0042043 // neurexin binding // not recorded 1383793_at BI274808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274808 /DB_XREF=gi:14886071 /DB_XREF=UI-R-CX0-bxa-c-09-0-UI.s1 /CLONE=UI-R-CX0-bxa-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.49284.2 /TIER=ConsEnd /STK=0 /UG=Rn.49284 /UG_TITLE=ESTs, Highly similar to Y779_HUMAN Hypothetical protein KIAA0779 (H.sapiens) BI274808 transmembrane and coiled-coil domain family 1 Tmcc1 312654 XM_001054467 /// XM_232287 1383794_at AI575277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575277 /DB_XREF=gi:4559653 /DB_XREF=UI-R-Y0-vc-f-10-0-UI.s1 /CLONE=UI-R-Y0-vc-f-10-0-UI /FEA=EST /CNT=4 /TID=Rn.20285.1 /TIER=ConsEnd /STK=0 /UG=Rn.20285 /UG_TITLE=ESTs AI575277 similar to RIKEN cDNA A930038C07 RGD1311080 312401 XR_008378 /// XR_086231 1383795_at BF521753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF521753 /DB_XREF=gi:11629720 /DB_XREF=UI-R-Y0-lu-b-09-0-UI.r2 /CLONE=UI-R-Y0-lu-b-09-0-UI /FEA=EST /CNT=4 /TID=Rn.22181.3 /TIER=ConsEnd /STK=0 /UG=Rn.22181 /UG_TITLE=ESTs BF521753 1383796_at BF550303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550303 /DB_XREF=gi:11660033 /DB_XREF=UI-R-A1-ef-c-04-0-UI.r1 /CLONE=UI-R-A1-ef-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.26676.2 /TIER=ConsEnd /STK=0 /UG=Rn.26676 /UG_TITLE=ESTs, Weakly similar to F56A11.5.p (Caenorhabditis elegans) (C.elegans) BF550303 MOCO sulphurase C-terminal domain containing 1 Mosc1 690745 NM_001100811 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0030151 // molybdenum ion binding // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1383797_a_at BF563247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563247 /DB_XREF=gi:11672977 /DB_XREF=UI-R-BO1-ajh-f-04-0-UI.r1 /CLONE=UI-R-BO1-ajh-f-04-0-UI /FEA=EST /CNT=1 /TID=Rn.48917.3 /TIER=ConsEnd /STK=0 /UG=Rn.48917 /UG_TITLE=ESTs, Weakly similar to S46683 hypothetical protein YHR189w - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BF563247 peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae) /// torsin family 2, member A Ptrh1 /// Tor2a 362112 /// 362113 NM_001007744 /// NM_001108580 0006412 // translation // inferred from electronic annotation /// 0051085 // chaperone mediated protein folding requiring cofactor // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004045 // aminoacyl-tRNA hydrolase activity // inferred from electronic annotation /// 0005179 // hormone activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1383798_at AI411061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411061 /DB_XREF=gi:4254565 /DB_XREF=EST239355 /CLONE=RKIEP59 /FEA=EST /CNT=4 /TID=Rn.38617.1 /TIER=ConsEnd /STK=0 /UG=Rn.38617 /UG_TITLE=ESTs AI411061 family with sequence similarity 151, member A Fam151a 313430 NM_001005558 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1383799_at BF567886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567886 /DB_XREF=gi:11677616 /DB_XREF=UI-R-BO0-aho-e-04-0-UI.r1 /CLONE=UI-R-BO0-aho-e-04-0-UI /FEA=EST /CNT=4 /TID=Rn.18050.1 /TIER=ConsEnd /STK=0 /UG=Rn.18050 /UG_TITLE=ESTs BF567886 G protein-coupled receptor 98 Gpr98 685383 XM_001063571 /// XM_002725894 0007154 // cell communication // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0046854 // phosphoinositide phosphorylation // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004428 // inositol or phosphatidylinositol kinase activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1383800_at AW523537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523537 /DB_XREF=gi:7165922 /DB_XREF=UI-R-BO0-ahu-c-04-0-UI.s1 /CLONE=UI-R-BO0-ahu-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.45013.1 /TIER=ConsEnd /STK=0 /UG=Rn.45013 /UG_TITLE=ESTs AW523537 Family with sequence similarity 155, member A Fam155a 498667 XM_001076507 /// XM_573950 0005488 // binding // inferred from electronic annotation 1383801_at BF550887 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550887 /DB_XREF=gi:11660617 /DB_XREF=UI-R-C1-jz-b-08-0-UI.r1 /CLONE=UI-R-C1-jz-b-08-0-UI /FEA=EST /CNT=4 /TID=Rn.16219.1 /TIER=ConsEnd /STK=0 /UG=Rn.16219 /UG_TITLE=ESTs BF550887 1383802_at AW531948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531948 /DB_XREF=gi:7174362 /DB_XREF=UI-R-C4-alh-c-05-0-UI.s1 /CLONE=UI-R-C4-alh-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.24533.1 /TIER=ConsEnd /STK=0 /UG=Rn.24533 /UG_TITLE=ESTs, Highly similar to T14761 hypothetical protein DKFZp434K233.1 (H.sapiens) AW531948 1383803_at BF283176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283176 /DB_XREF=gi:11214246 /DB_XREF=EST447767 /CLONE=RGIDY53 /FEA=EST /CNT=4 /TID=Rn.24706.1 /TIER=ConsEnd /STK=0 /UG=Rn.24706 /UG_TITLE=ESTs BF283176 1383804_at BI287409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287409 /DB_XREF=gi:14942996 /DB_XREF=UI-R-CS0s-cbo-f-10-0-UI.s1 /CLONE=UI-R-CS0s-cbo-f-10-0-UI /FEA=EST /CNT=4 /TID=Rn.46222.1 /TIER=ConsEnd /STK=0 /UG=Rn.46222 /UG_TITLE=ESTs BI287409 1383805_at BG666454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666454 /DB_XREF=gi:13888376 /DB_XREF=DRA06G02 /CLONE=DRA06G02 /FEA=EST /CNT=4 /TID=Rn.23142.1 /TIER=ConsEnd /STK=0 /UG=Rn.23142 /UG_TITLE=ESTs BG666454 0016301 // kinase activity // inferred from electronic annotation 1383806_at BF556825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556825 /DB_XREF=gi:11666555 /DB_XREF=UI-R-E1-fh-a-01-0-UI.r1 /CLONE=UI-R-E1-fh-a-01-0-UI /FEA=EST /CNT=4 /TID=Rn.41243.1 /TIER=ConsEnd /STK=0 /UG=Rn.41243 /UG_TITLE=ESTs, Weakly similar to STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 (R.norvegicus) BF556825 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 Smarce1 303518 NM_001024993 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0016514 // SWI/SNF complex // not recorded /// 0017053 // transcriptional repressor complex // not recorded /// 0071564 // npBAF complex // not recorded /// 0071565 // nBAF complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008080 // N-acetyltransferase activity // not recorded /// 0047485 // protein N-terminus binding // not recorded 1383807_at BG672767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672767 /DB_XREF=gi:13894866 /DB_XREF=DRNCPD01 /CLONE=DRNCPD01 /FEA=EST /CNT=4 /TID=Rn.61928.1 /TIER=ConsEnd /STK=0 /UG=Rn.61928 /UG_TITLE=ESTs BG672767 TBC1 domain family, member 19 Tbc1d19 289657 NM_001106008 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1383808_at AA818423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818423 /DB_XREF=gi:4228219 /DB_XREF=UI-R-A0-au-g-01-0-UI.s1 /CLONE=UI-R-A0-au-g-01-0-UI /FEA=EST /CNT=4 /TID=Rn.21877.1 /TIER=ConsEnd /STK=0 /UG=Rn.21877 /UG_TITLE=ESTs, Weakly similar to T20262 hypothetical protein C55A6.2 - Caenorhabditis elegans (C.elegans) AA818423 tubulin tyrosine ligase-like family, member 1 Ttll1 362969 NM_001012200 0006464 // protein modification process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004835 // tubulin-tyrosine ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1383809_at BF562237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562237 /DB_XREF=gi:11671967 /DB_XREF=UI-R-A0-bd-f-04-0-UI.r2 /CLONE=UI-R-A0-bd-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.25407.1 /TIER=ConsEnd /STK=0 /UG=Rn.25407 /UG_TITLE=ESTs BF562237 1383810_at AA955678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955678 /DB_XREF=gi:4238073 /DB_XREF=UI-R-E1-fc-h-06-0-UI.s1 /CLONE=UI-R-E1-fc-h-06-0-UI /FEA=EST /CNT=4 /TID=Rn.9516.1 /TIER=ConsEnd /STK=0 /UG=Rn.9516 /UG_TITLE=ESTs AA955678 1383811_at AI145336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145336 /DB_XREF=gi:3667129 /DB_XREF=UI-R-BT0-pq-g-05-0-UI.s1 /CLONE=UI-R-BT0-pq-g-05-0-UI /FEA=EST /CNT=4 /TID=Rn.23892.1 /TIER=ConsEnd /STK=0 /UG=Rn.23892 /UG_TITLE=ESTs AI145336 1383812_at BG373436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373436 /DB_XREF=gi:13270013 /DB_XREF=UI-R-CS0-bsd-c-04-0-UI.s1 /CLONE=UI-R-CS0-bsd-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.40868.1 /TIER=ConsEnd /STK=0 /UG=Rn.40868 /UG_TITLE=ESTs, Weakly similar to K1CU RAT KERATIN, TYPE I CYTOSKELETAL 21 (R.norvegicus) BG373436 similar to Phakinin (Beaded filament structural protein 2) (Lens fiber cell beaded filament protein CP 49) (CP49) (49 kDa cytoskeletal protein) LOC501046 501046 XR_006440 /// XR_085899 0005882 // intermediate filament // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 1383813_at BF567478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567478 /DB_XREF=gi:11677208 /DB_XREF=UI-R-BO0-aia-f-06-0-UI.r1 /CLONE=UI-R-BO0-aia-f-06-0-UI /FEA=EST /CNT=4 /TID=Rn.64229.1 /TIER=ConsEnd /STK=0 /UG=Rn.64229 /UG_TITLE=ESTs BF567478 ADP-ribosylation factor-like 2 binding protein Arl2bp 498910 NM_001024906 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 1383814_at BF556870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556870 /DB_XREF=gi:11666600 /DB_XREF=UI-R-E1-gm-h-08-0-UI.r1 /CLONE=UI-R-E1-gm-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.19747.1 /TIER=ConsEnd /STK=0 /UG=Rn.19747 /UG_TITLE=ESTs BF556870 1383815_at BF543208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543208 /DB_XREF=gi:11634315 /DB_XREF=UI-R-AF1-aax-g-04-0-UI.r1 /CLONE=UI-R-AF1-aax-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.47447.1 /TIER=ConsEnd /STK=0 /UG=Rn.47447 /UG_TITLE=ESTs, Weakly similar to I49759 Hrs - mouse (M.musculus) BF543208 zinc finger, FYVE domain containing 1 Zfyve1 299188 NM_001106743 0005783 // endoplasmic reticulum // not recorded /// 0005795 // Golgi stack // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0005545 // phosphatidylinositol binding // not recorded /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1383816_at BI285419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285419 /DB_XREF=gi:14939038 /DB_XREF=UI-R-DB0-byz-h-04-0-UI.s1 /CLONE=UI-R-DB0-byz-h-04-0-UI /FEA=EST /CNT=4 /TID=Rn.27110.1 /TIER=ConsEnd /STK=0 /UG=Rn.27110 /UG_TITLE=ESTs BI285419 phosphatidylinositol glycan anchor biosynthesis, class H Pigh 362756 NM_001108714 0016254 // preassembly of GPI anchor in ER membrane // not recorded 1383817_at AA817688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817688 /DB_XREF=gi:4198219 /DB_XREF=UI-R-A0-aa-c-03-0-UI.s1 /CLONE=UI-R-A0-aa-c-03-0-UI /FEA=EST /CNT=4 /TID=Rn.16369.1 /TIER=ConsEnd /STK=0 /UG=Rn.16369 /UG_TITLE=ESTs AA817688 1383818_at BF565324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565324 /DB_XREF=gi:11675054 /DB_XREF=UI-R-BO1-aju-c-03-0-UI.r1 /CLONE=UI-R-BO1-aju-c-03-0-UI /FEA=EST /CNT=4 /TID=Rn.47744.1 /TIER=ConsEnd /STK=0 /UG=Rn.47744 /UG_TITLE=ESTs, Weakly similar to SYBSR threonine synthase (EC 4.2.99.2) - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BF565324 threonine synthase-like 1 (S. cerevisiae) Thnsl1 498805 NM_001025035 0008152 // metabolic process // inferred from electronic annotation /// 0009073 // aromatic amino acid family biosynthetic process // inferred from electronic annotation /// 0009088 // threonine biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004765 // shikimate kinase activity // inferred from electronic annotation /// 0004795 // threonine synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1383819_at BI292866 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292866 /DB_XREF=gi:14953809 /DB_XREF=UI-R-DO0-cix-h-19-0-UI.s1 /CLONE=UI-R-DO0-cix-h-19-0-UI /FEA=EST /CNT=4 /TID=Rn.11556.1 /TIER=ConsEnd /STK=0 /UG=Rn.11556 /UG_TITLE=ESTs BI292866 1383820_at AI072624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072624 /DB_XREF=gi:3398818 /DB_XREF=UI-R-C2-nn-f-01-0-UI.s1 /CLONE=UI-R-C2-nn-f-01-0-UI /FEA=EST /CNT=4 /TID=Rn.33179.1 /TIER=ConsEnd /STK=0 /UG=Rn.33179 /UG_TITLE=ESTs AI072624 1383821_at AA899489 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899489 /DB_XREF=gi:4231987 /DB_XREF=UI-R-E0-de-c-12-0-UI.s1 /CLONE=UI-R-E0-de-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.32391.1 /TIER=ConsEnd /STK=0 /UG=Rn.32391 /UG_TITLE=ESTs AA899489 1383822_at AI029990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029990 /DB_XREF=gi:3247816 /DB_XREF=UI-R-C0-jr-f-11-0-UI.s1 /CLONE=UI-R-C0-jr-f-11-0-UI /FEA=EST /CNT=4 /TID=Rn.17091.1 /TIER=ConsEnd /STK=0 /UG=Rn.17091 /UG_TITLE=ESTs AI029990 bicaudal D homolog 2 (Drosophila) Bicd2 306809 NM_001033674 /// NM_198765 0006810 // transport // inferred from electronic annotation /// 0007018 // microtubule-based movement // not recorded /// 0007018 // microtubule-based movement // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383823_at AI045143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045143 /DB_XREF=gi:3291962 /DB_XREF=UI-R-C1-kk-a-07-0-UI.s1 /CLONE=UI-R-C1-kk-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.20849.1 /TIER=ConsEnd /STK=0 /UG=Rn.20849 /UG_TITLE=ESTs AI045143 1383824_at AI029445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029445 /DB_XREF=gi:4298612 /DB_XREF=UI-R-C0-ir-e-03-0-UI.s1 /CLONE=UI-R-C0-ir-e-03-0-UI /FEA=EST /CNT=4 /TID=Rn.7998.1 /TIER=ConsEnd /STK=0 /UG=Rn.7998 /UG_TITLE=ESTs, Moderately similar to Ldb1a (M.musculus) AI029445 LIM domain binding 2 Ldb2 289664 NM_001106009 0007275 // multicellular organismal development // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003712 // transcription cofactor activity // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation 1383825_at AW527313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527313 /DB_XREF=gi:7169727 /DB_XREF=UI-R-BO1-ajs-h-05-0-UI.s1 /CLONE=UI-R-BO1-ajs-h-05-0-UI /FEA=EST /CNT=4 /TID=Rn.49420.1 /TIER=ConsEnd /STK=0 /UG=Rn.49420 /UG_TITLE=ESTs, Highly similar to A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed With Inositol-(1,4,5)-Triphosphate (M.musculus) AW527313 radixin Rdx 315655 NM_001005889 0030033 // microvillus assembly // not recorded /// 0045176 // apical protein localization // inferred from mutant phenotype /// 0045176 // apical protein localization // not recorded /// 0051016 // barbed-end actin filament capping // inferred from direct assay /// 0070848 // response to growth factor stimulus // inferred from expression pattern 0001726 // ruffle // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005902 // microvillus // inferred from direct assay /// 0005902 // microvillus // not recorded /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0019898 // extrinsic to membrane // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030175 // filopodium // not recorded /// 0030496 // midbody // inferred from direct assay /// 0032154 // cleavage furrow // inferred from direct assay /// 0032420 // stereocilium // not recorded /// 0045177 // apical part of cell // not recorded 0003779 // actin binding // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 1383826_at AA924620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924620 /DB_XREF=gi:4235811 /DB_XREF=UI-R-A1-ea-h-08-0-UI.s1 /CLONE=UI-R-A1-ea-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.8397.1 /TIER=ConsEnd /STK=0 /UG=Rn.8397 /UG_TITLE=ESTs, Moderately similar to G01251 Rar protein (H.sapiens) AA924620 Rab40b, member RAS oncogene family Rab40b 303754 NM_001107076 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1383827_at AI059119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059119 /DB_XREF=gi:3332896 /DB_XREF=UI-R-C1-lr-h-05-0-UI.s1 /CLONE=UI-R-C1-lr-h-05-0-UI /FEA=EST /CNT=4 /TID=Rn.18893.2 /TIER=ConsEnd /STK=0 /UG=Rn.18893 /UG_TITLE=ESTs, Weakly similar to S40704 hypothetical protein C07A9.3 - Caenorhabditis elegans (C.elegans) AI059119 tousled-like kinase 1 Tlk1 311118 NM_001107734 0001672 // regulation of chromatin assembly or disassembly // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006886 // intracellular protein transport // not recorded /// 0023034 // intracellular signaling pathway // not recorded 0005634 // nucleus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1383828_at AI228058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228058 /DB_XREF=gi:3811945 /DB_XREF=EST224753 /CLONE=RBRCP57 /FEA=EST /CNT=4 /TID=Rn.59832.1 /TIER=ConsEnd /STK=0 /UG=Rn.59832 /UG_TITLE=ESTs AI228058 1383829_at BF392234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392234 /DB_XREF=gi:11377091 /DB_XREF=UI-R-CA0-bff-g-03-0-UI.s1 /CLONE=UI-R-CA0-bff-g-03-0-UI /FEA=EST /CNT=4 /TID=Rn.51470.1 /TIER=ConsEnd /STK=0 /UG=Rn.51470 /UG_TITLE=ESTs BF392234 bobby sox homolog (Drosophila) Bbx 303970 NM_001079938 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1383830_a_at AI070135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070135 /DB_XREF=gi:3396386 /DB_XREF=UI-R-Y0-lu-f-07-0-UI.s1 /CLONE=UI-R-Y0-lu-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.19665.1 /TIER=ConsEnd /STK=0 /UG=Rn.19665 /UG_TITLE=ESTs, Moderately similar to PEX3_RAT PEROXISOMAL ASSEMBLY PROTEIN PEX3 (PEROXIN-3) (R.norvegicus) AI070135 oxysterol binding protein-like 1A Osbpl1a 259221 NM_172023 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation 1383831_at BI280298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280298 /DB_XREF=gi:14928942 /DB_XREF=UI-R-DE0-cag-c-09-0-UI.s1 /CLONE=UI-R-DE0-cag-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.37910.1 /TIER=ConsEnd /STK=0 /UG=Rn.37910 /UG_TITLE=ESTs BI280298 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 Qrsl1 309911 NM_001014034 0006412 // translation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016884 // carbon-nitrogen ligase activity, with glutamine as amido-N-donor // inferred from electronic annotation 1383832_at AI073075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073075 /DB_XREF=gi:3399269 /DB_XREF=UI-R-Y0-lx-g-04-0-UI.s1 /CLONE=UI-R-Y0-lx-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.20347.1 /TIER=ConsEnd /STK=0 /UG=Rn.20347 /UG_TITLE=ESTs AI073075 solute carrier family 5 (sodium/glucose cotransporter), member 12 Slc5a12 362188 NM_001108588 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1383833_at BI291641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291641 /DB_XREF=gi:14951377 /DB_XREF=UI-R-DN0-ciu-l-07-0-UI.s1 /CLONE=UI-R-DN0-ciu-l-07-0-UI /FEA=EST /CNT=4 /TID=Rn.46980.1 /TIER=ConsEnd /STK=0 /UG=Rn.46980 /UG_TITLE=ESTs BI291641 family with sequence similarity 55, member B Fam55b 500991 NM_001025055 0005576 // extracellular region // inferred from electronic annotation 1383834_at BI285391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285391 /DB_XREF=gi:14938980 /DB_XREF=UI-R-DB0-byz-e-09-0-UI.s1 /CLONE=UI-R-DB0-byz-e-09-0-UI /FEA=EST /CNT=4 /TID=Rn.29783.1 /TIER=ConsEnd /STK=0 /UG=Rn.29783 /UG_TITLE=ESTs, Weakly similar to Y167_HUMAN HYPOTHETICAL PROTEIN KIAA0167 (H.sapiens) BI285391 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 Agap3 362300 NM_001108616 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1383835_at BI303704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303704 /DB_XREF=gi:14979984 /DB_XREF=UI-R-DR0-cjb-g-23-0-UI.s1 /CLONE=UI-R-DR0-cjb-g-23-0-UI /FEA=EST /CNT=4 /TID=Rn.32756.1 /TIER=ConsEnd /STK=0 /UG=Rn.32756 /UG_TITLE=ESTs BI303704 1383836_at BM389408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389408 /DB_XREF=gi:18189461 /DB_XREF=UI-R-CN1-cjk-k-21-0-UI.s1 /CLONE=UI-R-CN1-cjk-k-21-0-UI /FEA=EST /CNT=4 /TID=Rn.16746.1 /TIER=ConsEnd /STK=0 /UG=Rn.16746 /UG_TITLE=ESTs, Moderately similar to 60S RIBOSOMAL PROTEIN L21 (R.norvegicus) BM389408 1383837_at AI102932 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102932 /DB_XREF=gi:3707567 /DB_XREF=EST212221 /CLONE=REMBV10 /FEA=EST /CNT=4 /TID=Rn.23280.1 /TIER=ConsEnd /STK=0 /UG=Rn.23280 /UG_TITLE=ESTs, Highly similar to T08721 hypothetical protein DKFZp566C243.1 (H.sapiens) AI102932 Yip1 domain family, member 3 Yipf3 301245 NM_001007801 0030154 // cell differentiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030133 // transport vesicle // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 1383838_at BI296294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296294 /DB_XREF=gi:14960594 /DB_XREF=UI-R-DK0-cey-f-11-0-UI.s1 /CLONE=UI-R-DK0-cey-f-11-0-UI /FEA=EST /CNT=4 /TID=Rn.24659.1 /TIER=ConsEnd /STK=0 /UG=Rn.24659 /UG_TITLE=ESTs BI296294 1383839_at AI576427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576427 /DB_XREF=gi:4560803 /DB_XREF=UI-R-Y0-vm-f-11-0-UI.s1 /CLONE=UI-R-Y0-vm-f-11-0-UI /FEA=EST /CNT=4 /TID=Rn.38262.1 /TIER=ConsEnd /STK=0 /UG=Rn.38262 /UG_TITLE=ESTs, Moderately similar to T00255 hypothetical protein KIAA0610 (H.sapiens) AI576427 spastic paraplegia 20 (Troyer syndrome) homolog (human) Spg20 295053 NM_001106433 0005737 // cytoplasm // not recorded 0031625 // ubiquitin protein ligase binding // not recorded 1383840_at AA963833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963833 /DB_XREF=gi:4278775 /DB_XREF=UI-R-C0-gs-e-11-0-UI.s1 /CLONE=UI-R-C0-gs-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.42632.1 /TIER=ConsEnd /STK=0 /UG=Rn.42632 /UG_TITLE=ESTs AA963833 chondroitin sulfate N-acetylgalactosaminyltransferase 1 Csgalnact1 306375 NM_001107309 0019276 // UDP-N-acetylgalactosamine metabolic process // inferred from electronic annotation /// 0019276 // UDP-N-acetylgalactosamine metabolic process // not recorded /// 0030206 // chondroitin sulfate biosynthetic process // inferred from electronic annotation /// 0030206 // chondroitin sulfate biosynthetic process // not recorded /// 0046398 // UDP-glucuronate metabolic process // inferred from electronic annotation /// 0046398 // UDP-glucuronate metabolic process // not recorded /// 0050653 // chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process // inferred from electronic annotation /// 0050653 // chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process // not recorded 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0008376 // acetylgalactosaminyltransferase activity // not recorded /// 0008376 // acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0008955 // peptidoglycan glycosyltransferase activity // inferred from electronic annotation /// 0008955 // peptidoglycan glycosyltransferase activity // not recorded /// 0015020 // glucuronosyltransferase activity // inferred from electronic annotation /// 0015020 // glucuronosyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0047237 // glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0047237 // glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity // not recorded /// 0047238 // glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0047238 // glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity // not recorded 1383841_at BF396378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396378 /DB_XREF=gi:11381350 /DB_XREF=UI-R-BS2-bdx-d-10-0-UI.s1 /CLONE=UI-R-BS2-bdx-d-10-0-UI /FEA=EST /CNT=4 /TID=Rn.37136.1 /TIER=ConsEnd /STK=0 /UG=Rn.37136 /UG_TITLE=ESTs BF396378 1383842_at BG380618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380618 /DB_XREF=gi:13305090 /DB_XREF=UI-R-CT0-btz-d-09-0-UI.s1 /CLONE=UI-R-CT0-btz-d-09-0-UI /FEA=EST /CNT=4 /TID=Rn.21999.2 /TIER=ConsEnd /STK=0 /UG=Rn.21999 /UG_TITLE=ESTs, Weakly similar to S44843 K06H7.3 protein - Caenorhabditis elegans (C.elegans) BG380618 1383843_at AA945568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945568 /DB_XREF=gi:3105484 /DB_XREF=EST201067 /CLONE=RLIAP09 /FEA=EST /CNT=4 /TID=Rn.17293.2 /TIER=ConsEnd /STK=0 /UG=Rn.17293 /UG_TITLE=ESTs AA945568 Holocarboxylase synthetase (biotin-(proprionyl-Coenzyme A-carboxylase (ATP-hydrolysing)) ligase) Hlcs 288240 XM_001054618 /// XM_221630 0006464 // protein modification process // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0009305 // protein biotinylation // not recorded /// 0016570 // histone modification // not recorded /// 0070781 // response to biotin // inferred from expression pattern /// 0070781 // response to biotin // not recorded /// 0071110 // histone biotinylation // not recorded 0000785 // chromatin // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005652 // nuclear lamina // not recorded /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded /// 0016363 // nuclear matrix // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 0004080 // biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity // inferred from direct assay /// 0004080 // biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity // not recorded /// 0009374 // biotin binding // not recorded /// 0018271 // biotin-protein ligase activity // not recorded /// 0019899 // enzyme binding // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay 1383844_at BI296898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296898 /DB_XREF=gi:14961781 /DB_XREF=UI-R-DK0-cgg-h-02-0-UI.s1 /CLONE=UI-R-DK0-cgg-h-02-0-UI /FEA=EST /CNT=4 /TID=Rn.26985.1 /TIER=ConsEnd /STK=0 /UG=Rn.26985 /UG_TITLE=ESTs BI296898 Rho guanine nucleotide exchange factor (GEF) 15 Arhgef15 287418 NM_001105789 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1383845_at AI059929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059929 /DB_XREF=gi:3333706 /DB_XREF=UI-R-C1-kr-e-06-0-UI.s1 /CLONE=UI-R-C1-kr-e-06-0-UI /FEA=EST /CNT=4 /TID=Rn.21159.1 /TIER=ConsEnd /STK=0 /UG=Rn.21159 /UG_TITLE=ESTs AI059929 1383846_at AI576094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576094 /DB_XREF=gi:4560470 /DB_XREF=UI-R-Y0-va-b-10-0-UI.s1 /CLONE=UI-R-Y0-va-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.24252.1 /TIER=ConsEnd /STK=0 /UG=Rn.24252 /UG_TITLE=ESTs AI576094 similar to Docking protein 5 (Downstream of tyrosine kinase 5) (Protein dok-5) RGD1562846 502694 NM_001109344 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation 0005066 // transmembrane receptor protein tyrosine kinase signaling protein activity // inferred from electronic annotation /// 0005158 // insulin receptor binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1383847_at BG379138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379138 /DB_XREF=gi:13303610 /DB_XREF=UI-R-BT1-bnk-b-09-0-UI.s1 /CLONE=UI-R-BT1-bnk-b-09-0-UI /FEA=EST /CNT=4 /TID=Rn.28057.1 /TIER=ConsEnd /STK=0 /UG=Rn.28057 /UG_TITLE=ESTs BG379138 1383848_at BE098191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098191 /DB_XREF=gi:8490019 /DB_XREF=UI-R-BJ1-ata-e-05-0-UI.s1 /CLONE=UI-R-BJ1-ata-e-05-0-UI /FEA=EST /CNT=4 /TID=Rn.47379.1 /TIER=ConsEnd /STK=0 /UG=Rn.47379 /UG_TITLE=ESTs BE098191 Adrenergic, beta-1-, receptor Adrb1 24925 NM_012701 0001996 // positive regulation of heart rate by epinephrine-norepinephrine // inferred from electronic annotation /// 0001996 // positive regulation of heart rate by epinephrine-norepinephrine // not recorded /// 0001997 // positive regulation of the force of heart contraction by epinephrine-norepinephrine // inferred from electronic annotation /// 0001997 // positive regulation of the force of heart contraction by epinephrine-norepinephrine // not recorded /// 0002024 // diet induced thermogenesis // inferred from electronic annotation /// 0002024 // diet induced thermogenesis // not recorded /// 0002025 // vasodilation by norepinephrine-epinephrine involved in regulation of systemic arterial blood pressure // inferred from electronic annotation /// 0002025 // vasodilation by norepinephrine-epinephrine involved in regulation of systemic arterial blood pressure // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // traceable author statement /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0009409 // response to cold // inferred from electronic annotation /// 0009409 // response to cold // not recorded /// 0030819 // positive regulation of cAMP biosynthetic process // not recorded /// 0031649 // heat generation // inferred from electronic annotation /// 0031649 // heat generation // not recorded /// 0040015 // negative regulation of multicellular organism growth // inferred from electronic annotation /// 0040015 // negative regulation of multicellular organism growth // not recorded /// 0042596 // fear response // inferred from electronic annotation /// 0042596 // fear response // not recorded /// 0048167 // regulation of synaptic plasticity // traceable author statement /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004935 // adrenergic receptor activity // inferred from electronic annotation /// 0004940 // beta1-adrenergic receptor activity // inferred from direct assay /// 0004940 // beta1-adrenergic receptor activity // not recorded /// 0004940 // beta1-adrenergic receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0031694 // alpha-2A adrenergic receptor binding // not recorded /// 0035240 // dopamine binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // not recorded /// 0051379 // epinephrine binding // inferred from direct assay /// 0051379 // epinephrine binding // traceable author statement /// 0051380 // norepinephrine binding // inferred from direct assay /// 0051380 // norepinephrine binding // traceable author statement 1383849_at AW143311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143311 /DB_XREF=gi:6163210 /DB_XREF=EST293607 /CLONE=RGIBK21 /FEA=EST /CNT=4 /TID=Rn.49002.1 /TIER=ConsEnd /STK=0 /UG=Rn.49002 /UG_TITLE=ESTs AW143311 regulatory factor X, 7 Rfx7 315804 NM_001127490 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1383850_at BF548042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548042 /DB_XREF=gi:11639149 /DB_XREF=UI-R-A0-be-h-03-0-UI.r1 /CLONE=UI-R-A0-be-h-03-0-UI /FEA=EST /CNT=4 /TID=Rn.7080.1 /TIER=ConsEnd /STK=0 /UG=Rn.7080 /UG_TITLE=ESTs BF548042 Similar to CG3740-PA LOC690000 690000 XM_001073988 /// XM_002725609 /// XM_002728734 1383851_at BF413072 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413072 /DB_XREF=gi:11401024 /DB_XREF=UI-R-BT1-bnv-h-05-0-UI.s1 /CLONE=UI-R-BT1-bnv-h-05-0-UI /FEA=EST /CNT=4 /TID=Rn.47243.1 /TIER=ConsEnd /STK=0 /UG=Rn.47243 /UG_TITLE=ESTs BF413072 coiled-coil domain containing 96 Ccdc96 289716 XM_001063560 /// XM_002724984 /// XM_002728121 /// XM_223518 1383852_at AI071395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071395 /DB_XREF=gi:3397610 /DB_XREF=UI-R-C2-mw-h-03-0-UI.s1 /CLONE=UI-R-C2-mw-h-03-0-UI /FEA=EST /CNT=4 /TID=Rn.34314.1 /TIER=ConsEnd /STK=0 /UG=Rn.34314 /UG_TITLE=ESTs, Moderately similar to D Chain D, Recombinant Serine Hydroxymethyltransferase (Mouse) (M.musculus) AI071395 1383853_at BE103067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103067 /DB_XREF=gi:8495166 /DB_XREF=UI-R-BT1-aqw-d-02-0-UI.s1 /CLONE=UI-R-BT1-aqw-d-02-0-UI /FEA=EST /CNT=4 /TID=Rn.38297.1 /TIER=ConsEnd /STK=0 /UG=Rn.38297 /UG_TITLE=ESTs, Weakly similar to T22442 hypothetical protein F49E11.1b - Caenorhabditis elegans (C.elegans) BE103067 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3 Dyrk3 304775 NM_001024767 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383854_at AI715145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715145 /DB_XREF=gi:5032398 /DB_XREF=UI-R-Y0-abl-g-09-0-UI.s1 /CLONE=UI-R-Y0-abl-g-09-0-UI /FEA=EST /CNT=4 /TID=Rn.41305.1 /TIER=ConsEnd /STK=0 /UG=Rn.41305 /UG_TITLE=ESTs AI715145 1383855_at AI136525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136525 /DB_XREF=gi:3637302 /DB_XREF=UI-R-C2p-nq-e-04-0-UI.s1 /CLONE=UI-R-C2p-nq-e-04-0-UI /FEA=EST /CNT=4 /TID=Rn.27160.1 /TIER=ConsEnd /STK=0 /UG=Rn.27160 /UG_TITLE=ESTs, Weakly similar to T32554 hypothetical protein F33D4.4 - Caenorhabditis elegans (C.elegans) AI136525 degenerative spermatocyte homolog 2, lipid desaturase (Drosophila) Degs2 314438 NM_001017457 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006667 // sphinganine metabolic process // inferred from electronic annotation /// 0006667 // sphinganine metabolic process // not recorded /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0030148 // sphingolipid biosynthetic process // inferred from electronic annotation /// 0030148 // sphingolipid biosynthetic process // not recorded /// 0046513 // ceramide biosynthetic process // inferred from electronic annotation /// 0046513 // ceramide biosynthetic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000170 // sphingosine hydroxylase activity // inferred from electronic annotation /// 0000170 // sphingosine hydroxylase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0042284 // sphingolipid delta-4 desaturase activity // inferred from electronic annotation /// 0042284 // sphingolipid delta-4 desaturase activity // not recorded 1383856_at AI547624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547624 /DB_XREF=gi:4465112 /DB_XREF=UI-R-C3-sz-d-08-0-UI.s1 /CLONE=UI-R-C3-sz-d-08-0-UI /FEA=EST /CNT=4 /TID=Rn.41608.1 /TIER=ConsEnd /STK=0 /UG=Rn.41608 /UG_TITLE=ESTs AI547624 1383857_at BF411408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411408 /DB_XREF=gi:11399390 /DB_XREF=UI-R-CN0-bmk-a-08-0-UI.s1 /CLONE=UI-R-CN0-bmk-a-08-0-UI /FEA=EST /CNT=4 /TID=Rn.20546.1 /TIER=ConsEnd /STK=0 /UG=Rn.20546 /UG_TITLE=ESTs, Moderately similar to A48679 differentiated keratinocyte S protein precursor (H.sapiens) BF411408 1383858_at BF548326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548326 /DB_XREF=gi:11639433 /DB_XREF=UI-R-A0-av-b-03-0-UI.r1 /CLONE=UI-R-A0-av-b-03-0-UI /FEA=EST /CNT=4 /TID=Rn.14889.1 /TIER=ConsEnd /STK=0 /UG=Rn.14889 /UG_TITLE=ESTs BF548326 tweety homolog 1 (Drosophila) Ttyh1 292597 NM_001106225 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0031589 // cell-substrate adhesion // not recorded /// 0046847 // filopodium assembly // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031527 // filopodium membrane // not recorded /// 0032433 // filopodium tip // not recorded /// 0034707 // chloride channel complex // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation 1383859_at AA963376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963376 /DB_XREF=gi:4278300 /DB_XREF=UI-R-E1-ga-h-10-0-UI.s1 /CLONE=UI-R-E1-ga-h-10-0-UI /FEA=EST /CNT=4 /TID=Rn.23195.1 /TIER=ConsEnd /STK=0 /UG=Rn.23195 /UG_TITLE=ESTs AA963376 1383860_at BI296947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296947 /DB_XREF=gi:14961872 /DB_XREF=UI-R-DK0-cgj-d-11-0-UI.s1 /CLONE=UI-R-DK0-cgj-d-11-0-UI /FEA=EST /CNT=4 /TID=Rn.15917.1 /TIER=ConsEnd /STK=0 /UG=Rn.15917 /UG_TITLE=ESTs BI296947 Fos-like antigen 2 Fosl2 25446 NM_012954 0001661 // conditioned taste aversion // inferred from expression pattern /// 0001666 // response to hypoxia // inferred from mutant phenotype /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006950 // response to stress // inferred from expression pattern /// 0007565 // female pregnancy // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0007623 // circadian rhythm // inferred from expression pattern /// 0009409 // response to cold // inferred from expression pattern /// 0009416 // response to light stimulus // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009636 // response to toxin // inferred from expression pattern /// 0009648 // photoperiodism // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030431 // sleep // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from mutant phenotype /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045941 // positive regulation of transcription // inferred from direct assay /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0051591 // response to cAMP // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred by curator /// 0046983 // protein dimerization activity // inferred from electronic annotation 1383861_at BF394135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394135 /DB_XREF=gi:11378999 /DB_XREF=UI-R-CA0-bha-a-07-0-UI.s1 /CLONE=UI-R-CA0-bha-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.27729.1 /TIER=ConsEnd /STK=0 /UG=Rn.27729 /UG_TITLE=ESTs BF394135 1383862_at BF404050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404050 /DB_XREF=gi:11392025 /DB_XREF=UI-R-CA1-bjd-o-02-0-UI.s1 /CLONE=UI-R-CA1-bjd-o-02-0-UI /FEA=EST /CNT=4 /TID=Rn.6508.1 /TIER=ConsEnd /STK=0 /UG=Rn.6508 /UG_TITLE=ESTs BF404050 1383863_at BF288303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288303 /DB_XREF=gi:11219373 /DB_XREF=EST452894 /CLONE=RGIGS15 /FEA=EST /CNT=4 /TID=Rn.54012.1 /TIER=ConsEnd /STK=0 /UG=Rn.54012 /UG_TITLE=ESTs BF288303 LIM domain only 2 Lmo2 362176 NM_001037358 0045647 // negative regulation of erythrocyte differentiation // inferred from electronic annotation /// 0045647 // negative regulation of erythrocyte differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383864_at BF412512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412512 /DB_XREF=gi:11400501 /DB_XREF=UI-R-BT1-bno-d-12-0-UI.s1 /CLONE=UI-R-BT1-bno-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.18080.1 /TIER=ConsEnd /STK=0 /UG=Rn.18080 /UG_TITLE=ESTs BF412512 1383865_at AA944094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944094 /DB_XREF=gi:3104010 /DB_XREF=EST199593 /CLONE=REMAB09 /FEA=EST /CNT=4 /TID=Rn.17280.1 /TIER=ConsEnd /STK=0 /UG=Rn.17280 /UG_TITLE=ESTs AA944094 Similar to KIAA0892 protein RGD1308759 290668 NM_001106077 0034088 // maintenance of mitotic sister chromatid cohesion // not recorded 0000785 // chromatin // not recorded /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0032116 // cohesin loading complex // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0047485 // protein N-terminus binding // not recorded 1383866_at BI293248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293248 /DB_XREF=gi:14954569 /DB_XREF=UI-R-DK0-cdm-e-12-0-UI.s1 /CLONE=UI-R-DK0-cdm-e-12-0-UI /FEA=EST /CNT=4 /TID=Rn.41825.1 /TIER=ConsEnd /STK=0 /UG=Rn.41825 /UG_TITLE=ESTs BI293248 1383867_at BE102803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102803 /DB_XREF=gi:8494902 /DB_XREF=UI-R-BT1-aqt-d-12-0-UI.s1 /CLONE=UI-R-BT1-aqt-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.47334.1 /TIER=ConsEnd /STK=0 /UG=Rn.47334 /UG_TITLE=ESTs BE102803 eukaryotic translation initiation factor 5A2 Eif5a2 310261 NM_001100697 /// XM_001063995 /// XM_226974 0006452 // translational frameshifting // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008612 // peptidyl-lysine modification to hypusine // inferred from electronic annotation /// 0008612 // peptidyl-lysine modification to hypusine // not recorded /// 0045901 // positive regulation of translational elongation // inferred from electronic annotation /// 0045905 // positive regulation of translational termination // inferred from electronic annotation 0005829 // cytosol // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043022 // ribosome binding // inferred from electronic annotation 1383869_at AI071350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071350 /DB_XREF=gi:3397565 /DB_XREF=UI-R-C2-mu-b-10-0-UI.s1 /CLONE=UI-R-C2-mu-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.20510.1 /TIER=ConsEnd /STK=0 /UG=Rn.20510 /UG_TITLE=ESTs AI071350 1383870_at BI303863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303863 /DB_XREF=gi:14980143 /DB_XREF=UI-R-DS0-cjd-o-08-0-UI.s1 /CLONE=UI-R-DS0-cjd-o-08-0-UI /FEA=EST /CNT=4 /TID=Rn.13066.1 /TIER=ConsEnd /STK=0 /UG=Rn.13066 /UG_TITLE=ESTs BI303863 homeo box B6 Hoxb6 497986 XM_573182 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0034101 // erythrocyte homeostasis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048706 // embryonic skeletal system development // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1383871_at BE120348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120348 /DB_XREF=gi:8512453 /DB_XREF=UI-R-CA0-baq-d-05-0-UI.s1 /CLONE=UI-R-CA0-baq-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.8056.1 /TIER=ConsEnd /STK=0 /UG=Rn.8056 /UG_TITLE=ESTs BE120348 1383872_at AW142811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142811 /DB_XREF=gi:6162710 /DB_XREF=EST293065 /CLONE=RGIAW20 /FEA=EST /CNT=4 /TID=Rn.17267.1 /TIER=ConsEnd /STK=0 /UG=Rn.17267 /UG_TITLE=ESTs AW142811 1383873_at BG377729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377729 /DB_XREF=gi:13302201 /DB_XREF=UI-R-CU0-bva-d-01-0-UI.s1 /CLONE=UI-R-CU0-bva-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.15751.1 /TIER=ConsEnd /STK=0 /UG=Rn.15751 /UG_TITLE=ESTs BG377729 R-spondin 3 homolog (Xenopus laevis) Rspo3 498997 NM_001100990 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060670 // branching involved in embryonic placenta morphogenesis // inferred from electronic annotation /// 0060670 // branching involved in embryonic placenta morphogenesis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005109 // frizzled binding // inferred from electronic annotation /// 0005109 // frizzled binding // not recorded /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded 1383874_at BG670036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670036 /DB_XREF=gi:13892135 /DB_XREF=DRNAAOE10 /CLONE=DRNAAOE10 /FEA=EST /CNT=4 /TID=Rn.16708.1 /TIER=ConsEnd /STK=0 /UG=Rn.16708 /UG_TITLE=ESTs BG670036 1383875_at BE096378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096378 /DB_XREF=gi:8487309 /DB_XREF=UI-R-BU0-apf-d-04-0-UI.s1 /CLONE=UI-R-BU0-apf-d-04-0-UI /FEA=EST /CNT=4 /TID=Rn.9134.1 /TIER=ConsEnd /STK=0 /UG=Rn.9134 /UG_TITLE=ESTs, Moderately similar to UPKB_HUMAN UROPLAKIN IB (H.sapiens) BE096378 uroplakin 1B Upk1b 303924 NM_001024253 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded 1383876_at BG376705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376705 /DB_XREF=gi:13301177 /DB_XREF=UI-R-CU0-buv-a-02-0-UI.s1 /CLONE=UI-R-CU0-buv-a-02-0-UI /FEA=EST /CNT=4 /TID=Rn.15267.1 /TIER=ConsEnd /STK=0 /UG=Rn.15267 /UG_TITLE=ESTs BG376705 intraflagellar transport 74 homolog (Chlamydomonas) Ift74 313365 NM_001007001 0019861 // flagellum // inferred from electronic annotation 1383877_a_at AW433647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433647 /DB_XREF=gi:6964954 /DB_XREF=UI-R-BJ0p-afp-a-08-0-UI.s1 /CLONE=UI-R-BJ0p-afp-a-08-0-UI /FEA=EST /CNT=4 /TID=Rn.784.1 /TIER=ConsEnd /STK=0 /UG=Rn.784 /UG_TITLE=ESTs AW433647 1383878_at BI282060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282060 /DB_XREF=gi:14932430 /DB_XREF=UI-R-CU0s-cbw-a-07-0-UI.s1 /CLONE=UI-R-CU0s-cbw-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.18409.1 /TIER=ConsEnd /STK=0 /UG=Rn.18409 /UG_TITLE=ESTs, Weakly similar to S42634 homeoprotein, IDX-1 - rat (R.norvegicus) BI282060 1383879_at BG377332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377332 /DB_XREF=gi:13301804 /DB_XREF=UI-R-CU0-bvc-c-02-0-UI.s1 /CLONE=UI-R-CU0-bvc-c-02-0-UI /FEA=EST /CNT=4 /TID=Rn.23871.1 /TIER=ConsEnd /STK=0 /UG=Rn.23871 /UG_TITLE=ESTs BG377332 hypothetical protein LOC688163 LOC688163 688163 XM_001081354 /// XM_002724542 1383880_at BF418243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418243 /DB_XREF=gi:11406232 /DB_XREF=UI-R-CN0-blw-e-10-0-UI.s1 /CLONE=UI-R-CN0-blw-e-10-0-UI /FEA=EST /CNT=4 /TID=Rn.23339.1 /TIER=ConsEnd /STK=0 /UG=Rn.23339 /UG_TITLE=ESTs BF418243 0007155 // cell adhesion // inferred from electronic annotation 0008305 // integrin complex // inferred from electronic annotation 1383881_at BG665316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665316 /DB_XREF=gi:13887238 /DB_XREF=DRACBC05 /CLONE=DRACBC05 /FEA=EST /CNT=4 /TID=Rn.12431.1 /TIER=ConsEnd /STK=0 /UG=Rn.12431 /UG_TITLE=ESTs BG665316 1383882_at AW917556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917556 /DB_XREF=gi:8083309 /DB_XREF=EST348860 /CLONE=RGIEF27 /FEA=EST /CNT=4 /TID=Rn.19456.1 /TIER=ConsEnd /STK=0 /UG=Rn.19456 /UG_TITLE=ESTs AW917556 1383883_at BG380058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380058 /DB_XREF=gi:13304530 /DB_XREF=UI-R-CS0-btl-e-09-0-UI.s1 /CLONE=UI-R-CS0-btl-e-09-0-UI /FEA=EST /CNT=4 /TID=Rn.21220.1 /TIER=ConsEnd /STK=0 /UG=Rn.21220 /UG_TITLE=ESTs BG380058 1383884_at BF409598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409598 /DB_XREF=gi:11397573 /DB_XREF=UI-R-CA1-blm-c-09-0-UI.s1 /CLONE=UI-R-CA1-blm-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.12957.2 /TIER=ConsEnd /STK=0 /UG=Rn.12957 /UG_TITLE=ESTs BF409598 1383885_at BF560882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF560882 /DB_XREF=gi:11670612 /DB_XREF=UI-R-C1-kr-b-04-0-UI.r2 /CLONE=UI-R-C1-kr-b-04-0-UI /FEA=EST /CNT=4 /TID=Rn.39292.1 /TIER=ConsEnd /STK=0 /UG=Rn.39292 /UG_TITLE=ESTs BF560882 polybromo 1 Pbrm1 306254 XM_001059164 /// XM_240329 0001890 // placenta development // not recorded /// 0007507 // heart development // not recorded 0000776 // kinetochore // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0005515 // protein binding // not recorded 1383886_at BI275827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275827 /DB_XREF=gi:14920133 /DB_XREF=UI-R-CX0-bxh-a-09-0-UI.s1 /CLONE=UI-R-CX0-bxh-a-09-0-UI /FEA=EST /CNT=4 /TID=Rn.12229.1 /TIER=ConsEnd /STK=0 /UG=Rn.12229 /UG_TITLE=ESTs BI275827 1383887_at AA924984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924984 /DB_XREF=gi:4236175 /DB_XREF=UI-R-A1-eh-b-06-0-UI.s1 /CLONE=UI-R-A1-eh-b-06-0-UI /FEA=EST /CNT=4 /TID=Rn.13757.1 /TIER=ConsEnd /STK=0 /UG=Rn.13757 /UG_TITLE=ESTs AA924984 similar to Protein C20orf103 precursor RGD1306991 362220 NM_001014183 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1383888_at AA998264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998264 /DB_XREF=gi:4288656 /DB_XREF=UI-R-C0-ie-h-02-0-UI.s1 /CLONE=UI-R-C0-ie-h-02-0-UI /FEA=EST /CNT=4 /TID=Rn.35760.1 /TIER=ConsEnd /STK=0 /UG=Rn.35760 /UG_TITLE=ESTs, Moderately similar to JC2070 NADPH dehydrogenase (H.sapiens) AA998264 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1383889_at AI511225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511225 /DB_XREF=gi:4416924 /DB_XREF=UI-R-C3-sg-e-10-0-UI.s1 /CLONE=UI-R-C3-sg-e-10-0-UI /FEA=EST /CNT=4 /TID=Rn.34659.1 /TIER=ConsEnd /STK=0 /UG=Rn.34659 /UG_TITLE=ESTs AI511225 1383890_at AI112383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112383 /DB_XREF=gi:3512332 /DB_XREF=UI-R-Y0-mn-f-06-0-UI.s1 /CLONE=UI-R-Y0-mn-f-06-0-UI /FEA=EST /CNT=4 /TID=Rn.25210.1 /TIER=ConsEnd /STK=0 /UG=Rn.25210 /UG_TITLE=ESTs AI112383 huntingtin interacting protein 1 Hip1 192154 NM_001100475 0006897 // endocytosis // not recorded /// 0006897 // endocytosis // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from electronic annotation /// 0048260 // positive regulation of receptor-mediated endocytosis // not recorded /// 0048268 // clathrin coat assembly // inferred from direct assay /// 0048268 // clathrin coat assembly // not recorded /// 0048268 // clathrin coat assembly // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016021 // integral to membrane // traceable author statement /// 0030118 // clathrin coat // traceable author statement /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030276 // clathrin binding // inferred from direct assay /// 0030276 // clathrin binding // not recorded /// 0030276 // clathrin binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // not recorded 1383891_a_at AA997097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997097 /DB_XREF=gi:4281465 /DB_XREF=UI-R-C0-hr-c-06-0-UI.s1 /CLONE=UI-R-C0-hr-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.12917.1 /TIER=ConsEnd /STK=0 /UG=Rn.12917 /UG_TITLE=ESTs AA997097 FLYWCH-type zinc finger 1 Flywch1 360488 XM_001056224 /// XM_340760 1383892_at AA997097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997097 /DB_XREF=gi:4281465 /DB_XREF=UI-R-C0-hr-c-06-0-UI.s1 /CLONE=UI-R-C0-hr-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.12917.1 /TIER=ConsEnd /STK=0 /UG=Rn.12917 /UG_TITLE=ESTs AA997097 FLYWCH-type zinc finger 1 Flywch1 360488 XM_001056224 /// XM_340760 1383893_at AW140864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW140864 /DB_XREF=gi:6160702 /DB_XREF=EST290946 /CLONE=RGIAV74 /FEA=EST /CNT=4 /TID=Rn.24680.1 /TIER=ConsEnd /STK=0 /UG=Rn.24680 /UG_TITLE=ESTs, Weakly similar to VAG2_MOUSE VACUOLAR ATP SYNTHASE SUBUNIT G 2 (V-ATPASE G SUBUNIT 2) (VACUOLAR PROTON PUMP G SUBUNIT 2) (V-ATPASE 13 KDA SUBUNIT 2) (M.musculus) AW140864 ATPase, H+ transporting, lysosomal V1 subunit G3 Atp6v1g3 289407 NM_001105991 0006200 // ATP catabolic process // not recorded /// 0015992 // proton transport // inferred from electronic annotation /// 0015992 // proton transport // not recorded /// 0034220 // ion transmembrane transport // not recorded 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016471 // vacuolar proton-transporting V-type ATPase complex // inferred from electronic annotation 0008553 // hydrogen-exporting ATPase activity, phosphorylative mechanism // not recorded /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0051117 // ATPase binding // not recorded 1383894_at BI289486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289486 /DB_XREF=gi:14947106 /DB_XREF=UI-R-DK0-cfh-f-06-0-UI.s1 /CLONE=UI-R-DK0-cfh-f-06-0-UI /FEA=EST /CNT=4 /TID=Rn.17329.1 /TIER=ConsEnd /STK=0 /UG=Rn.17329 /UG_TITLE=ESTs BI289486 1383895_at AI144946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144946 /DB_XREF=gi:3666745 /DB_XREF=UI-R-BT0-pp-g-08-0-UI.s1 /CLONE=UI-R-BT0-pp-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.27744.1 /TIER=ConsEnd /STK=0 /UG=Rn.27744 /UG_TITLE=ESTs, Moderately similar to T42718 probable neural cell adhesion molecule L1 precursor - mouse (M.musculus) AI144946 dynein light chain roadblock-type 2 Dynlrb2 361415 NM_001108451 0005868 // cytoplasmic dynein complex // not recorded 0005515 // protein binding // not recorded 1383896_at BM387943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387943 /DB_XREF=gi:18187996 /DB_XREF=UI-R-CN1-cjk-h-10-0-UI.s1 /CLONE=UI-R-CN1-cjk-h-10-0-UI /FEA=EST /CNT=4 /TID=Rn.42968.1 /TIER=ConsEnd /STK=0 /UG=Rn.42968 /UG_TITLE=ESTs, Weakly similar to TC17 RAT TRANSCRIPTION FACTOR 17 (R.norvegicus) BM387943 similar to zinc finger protein 639 LOC683504 683504 NM_001080907 0006350 // transcription // inferred from electronic annotation /// 0019059 // initiation of viral infection // inferred from sequence or structural similarity /// 0030307 // positive regulation of cell growth // inferred from sequence or structural similarity /// 0043922 // negative regulation by host of viral transcription // inferred from sequence or structural similarity /// 0043923 // positive regulation by host of viral transcription // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1383897_at BE117477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117477 /DB_XREF=gi:8509582 /DB_XREF=UI-R-BS1-ayo-c-09-0-UI.s1 /CLONE=UI-R-BS1-ayo-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.38340.1 /TIER=ConsEnd /STK=0 /UG=Rn.38340 /UG_TITLE=ESTs BE117477 H2A histone family, member Y2 H2afy2 361844 NM_001135807 0006334 // nucleosome assembly // inferred from electronic annotation /// 0007549 // dosage compensation // inferred from electronic annotation /// 0007549 // dosage compensation // not recorded 0000786 // nucleosome // inferred from electronic annotation /// 0001740 // Barr body // inferred from electronic annotation /// 0001740 // Barr body // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1383898_at AA900127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900127 /DB_XREF=gi:4232616 /DB_XREF=UI-R-E0-dm-a-06-0-UI.s1 /CLONE=UI-R-E0-dm-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.38497.1 /TIER=ConsEnd /STK=0 /UG=Rn.38497 /UG_TITLE=ESTs, Weakly similar to G786_HUMAN PROTEIN GS3786 (H.sapiens) AA900127 family with sequence similarity 3, member D Fam3d 289949 NM_001106027 0046676 // negative regulation of insulin secretion // not recorded 1383899_at BI277849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277849 /DB_XREF=gi:14924121 /DB_XREF=UI-R-CX0-bxk-c-10-0-UI.s1 /CLONE=UI-R-CX0-bxk-c-10-0-UI /FEA=EST /CNT=4 /TID=Rn.22671.1 /TIER=ConsEnd /STK=0 /UG=Rn.22671 /UG_TITLE=ESTs BI277849 neural precursor cell expressed, developmentally down-regulated 4 Nedd4 25489 NM_012986 0006464 // protein modification process // inferred from electronic annotation /// 0006622 // protein targeting to lysosome // not recorded /// 0006955 // immune response // inferred from expression pattern /// 0007041 // lysosomal transport // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0010766 // negative regulation of sodium ion transport // not recorded /// 0010768 // negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage // not recorded /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0019089 // transmission of virus // not recorded /// 0030948 // negative regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0030948 // negative regulation of vascular endothelial growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0031175 // neuron projection development // not recorded /// 0031623 // receptor internalization // not recorded /// 0032801 // receptor catabolic process // not recorded /// 0034644 // cellular response to UV // not recorded /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0042921 // glucocorticoid receptor signaling pathway // not recorded /// 0044111 // development involved in symbiotic interaction // not recorded /// 0045732 // positive regulation of protein catabolic process // not recorded /// 0046824 // positive regulation of nucleocytoplasmic transport // not recorded /// 0048814 // regulation of dendrite morphogenesis // inferred from direct assay /// 0050847 // progesterone receptor signaling pathway // not recorded /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay 0000151 // ubiquitin ligase complex // not recorded /// 0000785 // chromatin // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005902 // microvillus // inferred from direct assay /// 0005938 // cell cortex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from direct assay /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019871 // sodium channel inhibitor activity // not recorded /// 0019904 // protein domain specific binding // not recorded /// 0031698 // beta-2 adrenergic receptor binding // not recorded /// 0043130 // ubiquitin binding // not recorded /// 0050815 // phosphoserine binding // not recorded /// 0050816 // phosphothreonine binding // not recorded /// 0070063 // RNA polymerase binding // not recorded /// 0070064 // proline-rich region binding // not recorded 1383900_at BG377183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377183 /DB_XREF=gi:13301655 /DB_XREF=UI-R-CU0-bvb-d-12-0-UI.s1 /CLONE=UI-R-CU0-bvb-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.15060.1 /TIER=ConsEnd /STK=0 /UG=Rn.15060 /UG_TITLE=ESTs BG377183 glutamine rich 2 Qrich2 501747 XM_001081721 /// XM_577148 0005515 // protein binding // not recorded 1383901_at BI287446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287446 /DB_XREF=gi:14943070 /DB_XREF=UI-R-CW0s-ccj-c-05-0-UI.s1 /CLONE=UI-R-CW0s-ccj-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.13721.1 /TIER=ConsEnd /STK=0 /UG=Rn.13721 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BI287446 1383902_at BI295406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295406 /DB_XREF=gi:14958821 /DB_XREF=UI-R-DK0-cer-c-05-0-UI.s1 /CLONE=UI-R-DK0-cer-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.46231.1 /TIER=ConsEnd /STK=0 /UG=Rn.46231 /UG_TITLE=ESTs BI295406 centrosomal protein 97kDa Cep97 304007 NM_001107096 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383903_at AW529294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529294 /DB_XREF=gi:7171708 /DB_XREF=UI-R-BT1-akm-c-09-0-UI.s1 /CLONE=UI-R-BT1-akm-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.43598.1 /TIER=ConsEnd /STK=0 /UG=Rn.43598 /UG_TITLE=ESTs AW529294 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 St8sia5 364901 NM_213628 0006486 // protein glycosylation // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation 0003828 // alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity // not recorded /// 0008373 // sialyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1383904_at BM386541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386541 /DB_XREF=gi:18186594 /DB_XREF=UI-R-CN1-cjg-c-24-0-UI.s1 /CLONE=UI-R-CN1-cjg-c-24-0-UI /FEA=EST /CNT=4 /TID=Rn.15994.1 /TIER=ConsEnd /STK=0 /UG=Rn.15994 /UG_TITLE=ESTs, Weakly similar to FIBG RAT FIBRINOGEN GAMMA-A-B CHAIN PRECURSOR (R.norvegicus) BM386541 fibrinogen-like 1 Fgl1 246186 NM_172010 0007165 // signal transduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation 1383905_at BF401729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401729 /DB_XREF=gi:11389704 /DB_XREF=UI-R-CA0-bgn-h-12-0-UI.s1 /CLONE=UI-R-CA0-bgn-h-12-0-UI /FEA=EST /CNT=4 /TID=Rn.17596.1 /TIER=ConsEnd /STK=0 /UG=Rn.17596 /UG_TITLE=ESTs BF401729 1383906_at BF416847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416847 /DB_XREF=gi:11404836 /DB_XREF=UI-R-CA0-bkv-g-05-0-UI.s1 /CLONE=UI-R-CA0-bkv-g-05-0-UI /FEA=EST /CNT=4 /TID=Rn.17894.1 /TIER=ConsEnd /STK=0 /UG=Rn.17894 /UG_TITLE=ESTs BF416847 neuralized homolog 3 (Drosophila) Neurl3 316326 NM_001014100 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383907_at BE117969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117969 /DB_XREF=gi:8510074 /DB_XREF=UI-R-BS1-azi-b-06-0-UI.s1 /CLONE=UI-R-BS1-azi-b-06-0-UI /FEA=EST /CNT=4 /TID=Rn.19231.1 /TIER=ConsEnd /STK=0 /UG=Rn.19231 /UG_TITLE=ESTs BE117969 1383908_at BF416685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416685 /DB_XREF=gi:11404714 /DB_XREF=UI-R-CN0-bkz-b-09-0-UI.s1 /CLONE=UI-R-CN0-bkz-b-09-0-UI /FEA=EST /CNT=4 /TID=Rn.11617.1 /TIER=ConsEnd /STK=0 /UG=Rn.11617 /UG_TITLE=ESTs BF416685 NOL1/NOP2/Sun domain family, member 6 Nsun6 307148 NM_001107367 0003723 // RNA binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation 1383909_at BG376442 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376442 /DB_XREF=gi:13300914 /DB_XREF=UI-R-CU0-but-e-09-0-UI.s1 /CLONE=UI-R-CU0-but-e-09-0-UI /FEA=EST /CNT=4 /TID=Rn.17896.1 /TIER=ConsEnd /STK=0 /UG=Rn.17896 /UG_TITLE=ESTs BG376442 ubiquitin protein ligase E3A Ube3a 361585 NM_001191837 /// XM_001055915 /// XM_341867 0001541 // ovarian follicle development // not recorded /// 0006464 // protein modification process // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0030521 // androgen receptor signaling pathway // not recorded /// 0035037 // sperm entry // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060736 // prostate gland growth // not recorded /// 0070936 // protein K48-linked ubiquitination // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded 0003713 // transcription coactivator activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1383910_at BF398220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398220 /DB_XREF=gi:11383207 /DB_XREF=UI-R-BS2-ben-h-10-0-UI.s1 /CLONE=UI-R-BS2-ben-h-10-0-UI /FEA=EST /CNT=4 /TID=Rn.12534.1 /TIER=ConsEnd /STK=0 /UG=Rn.12534 /UG_TITLE=ESTs, Moderately similar to T09071 SH3 domains-containing protein POSH - mouse (M.musculus) BF398220 1383911_at AA924574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924574 /DB_XREF=gi:4235765 /DB_XREF=UI-R-A1-dz-h-10-0-UI.s1 /CLONE=UI-R-A1-dz-h-10-0-UI /FEA=EST /CNT=4 /TID=Rn.15348.1 /TIER=ConsEnd /STK=0 /UG=Rn.15348 /UG_TITLE=ESTs, Weakly similar to T43460 hypothetical protein DKFZp434P1721.1 (H.sapiens) AA924574 lysine (K)-specific demethylase 4C Kdm4c 298144 NM_001106663 /// XM_001067369 /// XM_216426 0033169 // histone H3-K9 demethylation // not recorded /// 0033169 // histone H3-K9 demethylation // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0032454 // histone demethylase activity (H3-K9 specific) // inferred from electronic annotation /// 0032454 // histone demethylase activity (H3-K9 specific) // not recorded 1383912_at BM390524 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390524 /DB_XREF=gi:18190577 /DB_XREF=UI-R-CN1-cjr-a-13-0-UI.s1 /CLONE=UI-R-CN1-cjr-a-13-0-UI /FEA=EST /CNT=4 /TID=Rn.22702.1 /TIER=ConsEnd /STK=0 /UG=Rn.22702 /UG_TITLE=ESTs BM390524 similar to Protein C6orf115 LOC685045 685045 NM_001099647 1383913_at BF420633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420633 /DB_XREF=gi:11408622 /DB_XREF=UI-R-BJ2-bpy-c-10-0-UI.s1 /CLONE=UI-R-BJ2-bpy-c-10-0-UI /FEA=EST /CNT=4 /TID=Rn.24513.1 /TIER=ConsEnd /STK=0 /UG=Rn.24513 /UG_TITLE=ESTs BF420633 1383914_at AI717613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717613 /DB_XREF=gi:5034917 /DB_XREF=UI-R-Y0-acq-a-07-0-UI.s1 /CLONE=UI-R-Y0-acq-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.33889.1 /TIER=ConsEnd /STK=0 /UG=Rn.33889 /UG_TITLE=ESTs AI717613 murine retrovirus integration site 1 homolog Mrvi1 308899 NM_001105210 /// NM_001105211 1383915_at AI059630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059630 /DB_XREF=gi:3333407 /DB_XREF=UI-R-C1-le-c-11-0-UI.s1 /CLONE=UI-R-C1-le-c-11-0-UI /FEA=EST /CNT=4 /TID=Rn.7786.1 /TIER=ConsEnd /STK=0 /UG=Rn.7786 /UG_TITLE=ESTs AI059630 hypothetical protein LOC686120 LOC686120 686120 NR_026689 1383916_at AW533075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533075 /DB_XREF=gi:7175489 /DB_XREF=UI-R-BU0-amz-e-08-0-UI.s1 /CLONE=UI-R-BU0-amz-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.17613.1 /TIER=ConsEnd /STK=0 /UG=Rn.17613 /UG_TITLE=ESTs AW533075 T-box 15 Tbx15 295315 NM_001106451 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048701 // embryonic cranial skeleton morphogenesis // not recorded /// 0048704 // embryonic skeletal system morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1383917_at BE110730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110730 /DB_XREF=gi:8502876 /DB_XREF=UI-R-BJ1-avd-g-07-0-UI.s1 /CLONE=UI-R-BJ1-avd-g-07-0-UI /FEA=EST /CNT=4 /TID=Rn.19615.1 /TIER=ConsEnd /STK=0 /UG=Rn.19615 /UG_TITLE=ESTs, Weakly similar to plenty of SH3 domains; Plenty of SH3s (Mus musculus) (M.musculus) BE110730 ABI family, member 3 Abi3 303476 NM_001013118 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0030334 // regulation of cell migration // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383918_at AI070651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070651 /DB_XREF=gi:3396902 /DB_XREF=UI-R-C2-mx-a-05-0-UI.s1 /CLONE=UI-R-C2-mx-a-05-0-UI /FEA=EST /CNT=4 /TID=Rn.19813.1 /TIER=ConsEnd /STK=0 /UG=Rn.19813 /UG_TITLE=ESTs AI070651 1383919_at AI070704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070704 /DB_XREF=gi:3396955 /DB_XREF=UI-R-C2-mx-f-12-0-UI.s1 /CLONE=UI-R-C2-mx-f-12-0-UI /FEA=EST /CNT=4 /TID=Rn.21345.1 /TIER=ConsEnd /STK=0 /UG=Rn.21345 /UG_TITLE=ESTs AI070704 1383920_at BF408907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408907 /DB_XREF=gi:11396882 /DB_XREF=UI-R-BS2-bet-g-08-0-UI.s1 /CLONE=UI-R-BS2-bet-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.24273.1 /TIER=ConsEnd /STK=0 /UG=Rn.24273 /UG_TITLE=ESTs BF408907 aminomethyltransferase Amt 306586 NM_001014004 0006546 // glycine catabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0004047 // aminomethyltransferase activity // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1383921_at AW916957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916957 /DB_XREF=gi:8082695 /DB_XREF=EST348261 /CLONE=RGIDX19 /FEA=EST /CNT=4 /TID=Rn.49250.1 /TIER=ConsEnd /STK=0 /UG=Rn.49250 /UG_TITLE=ESTs AW916957 1383922_a_at BG375634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375634 /DB_XREF=gi:13300106 /DB_XREF=UI-R-CS0-btd-f-02-0-UI.s1 /CLONE=UI-R-CS0-btd-f-02-0-UI /FEA=EST /CNT=4 /TID=Rn.12061.1 /TIER=ConsEnd /STK=0 /UG=Rn.12061 /UG_TITLE=ESTs, Highly similar to N-acetyltransferase, homolog of S. cerevisiae ARD1; N-acetyltransferase ARD1, human homolog of (Homo sapiens) (H.sapiens) BG375634 ARD1 homolog A, N-acetyltransferase (S. cerevisiae) Ard1a 363518 NM_001135839 0006474 // N-terminal protein amino acid acetylation // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0005622 // intracellular // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0008080 // N-acetyltransferase activity // not recorded /// 0016407 // acetyltransferase activity // not recorded /// 0043022 // ribosome binding // not recorded 1383923_at BF410662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410662 /DB_XREF=gi:11398595 /DB_XREF=UI-R-CA0-bma-h-04-0-UI.s1 /CLONE=UI-R-CA0-bma-h-04-0-UI /FEA=EST /CNT=4 /TID=Rn.24298.1 /TIER=ConsEnd /STK=0 /UG=Rn.24298 /UG_TITLE=ESTs BF410662 1383924_at BF397684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397684 /DB_XREF=gi:11382668 /DB_XREF=UI-R-BS2-bed-d-11-0-UI.s1 /CLONE=UI-R-BS2-bed-d-11-0-UI /FEA=EST /CNT=4 /TID=Rn.54726.2 /TIER=ConsEnd /STK=0 /UG=Rn.54726 /UG_TITLE=ESTs BF397684 hypothetical protein LOC688765 LOC688765 688765 NM_001109512 0005515 // protein binding // not recorded 1383925_at BG375810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375810 /DB_XREF=gi:13300282 /DB_XREF=UI-R-CS0-btf-f-10-0-UI.s1 /CLONE=UI-R-CS0-btf-f-10-0-UI /FEA=EST /CNT=4 /TID=Rn.27362.1 /TIER=ConsEnd /STK=0 /UG=Rn.27362 /UG_TITLE=ESTs BG375810 migration and invasion inhibitory protein Miip 298643 NM_001017450 1383926_at BF557145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557145 /DB_XREF=gi:11666875 /DB_XREF=UI-R-E1-fy-a-12-0-UI.r1 /CLONE=UI-R-E1-fy-a-12-0-UI /FEA=EST /CNT=4 /TID=Rn.12911.1 /TIER=ConsEnd /STK=0 /UG=Rn.12911 /UG_TITLE=ESTs, Moderately similar to BU1B MOUSE MITOTIC CHECKPOINT SERINETHREONINE-PROTEIN KINASE BUB1 BETA (M.musculus) BF557145 budding uninhibited by benzimidazoles 1 homolog, beta (S. cerevisiae) Bub1b 171576 XM_001080736 /// XM_342494 0007091 // mitotic metaphase/anaphase transition // inferred from electronic annotation /// 0007091 // mitotic metaphase/anaphase transition // not recorded /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0034501 // protein localization to kinetochore // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000776 // kinetochore // inferred from electronic annotation /// 0000776 // kinetochore // not recorded /// 0000777 // condensed chromosome kinetochore // not recorded /// 0000940 // condensed chromosome outer kinetochore // inferred from electronic annotation /// 0000940 // condensed chromosome outer kinetochore // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1383927_at AW528112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528112 /DB_XREF=gi:7170526 /DB_XREF=UI-R-BT1-akh-h-07-0-UI.s1 /CLONE=UI-R-BT1-akh-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.22816.1 /TIER=ConsEnd /STK=0 /UG=Rn.22816 /UG_TITLE=ESTs AW528112 1383928_a_at AI170737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170737 /DB_XREF=gi:3710777 /DB_XREF=EST216675 /CLONE=RMUBA78 /FEA=EST /CNT=1 /TID=Rn.19020.2 /TIER=ConsEnd /STK=1 /UG=Rn.19020 /UG_TITLE=ESTs AI170737 similar to CG5500-PA LOC688310 688310 XM_001081793 1383929_at AI230265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230265 /DB_XREF=gi:3814152 /DB_XREF=EST226960 /CLONE=REMCU35 /FEA=EST /CNT=4 /TID=Rn.8931.1 /TIER=ConsEnd /STK=0 /UG=Rn.8931 /UG_TITLE=ESTs AI230265 1383930_at AI058455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058455 /DB_XREF=gi:3332232 /DB_XREF=UI-R-C1-ko-a-02-0-UI.s1 /CLONE=UI-R-C1-ko-a-02-0-UI /FEA=EST /CNT=4 /TID=Rn.19519.1 /TIER=ConsEnd /STK=0 /UG=Rn.19519 /UG_TITLE=ESTs AI058455 1383931_at AA901043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901043 /DB_XREF=gi:4233541 /DB_XREF=UI-R-A1-dv-e-04-0-UI.s1 /CLONE=UI-R-A1-dv-e-04-0-UI /FEA=EST /CNT=4 /TID=Rn.12124.1 /TIER=ConsEnd /STK=0 /UG=Rn.12124 /UG_TITLE=ESTs AA901043 1383932_at BF386167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386167 /DB_XREF=gi:11370991 /DB_XREF=UI-R-CA1-bba-g-04-0-UI.s1 /CLONE=UI-R-CA1-bba-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.17169.1 /TIER=ConsEnd /STK=0 /UG=Rn.17169 /UG_TITLE=ESTs BF386167 1383933_at AI136714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136714 /DB_XREF=gi:3637491 /DB_XREF=UI-R-C2p-nw-b-08-0-UI.s1 /CLONE=UI-R-C2p-nw-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.63753.1 /TIER=ConsEnd /STK=0 /UG=Rn.63753 /UG_TITLE=ESTs AI136714 similar to KIAA0564 protein RGD1308772 290381 XM_002725136 /// XM_214237 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1383934_at BI299169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299169 /DB_XREF=gi:14975449 /DB_XREF=UI-R-CV2-chs-a-06-0-UI.s1 /CLONE=UI-R-CV2-chs-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.28721.1 /TIER=ConsEnd /STK=0 /UG=Rn.28721 /UG_TITLE=ESTs BI299169 1383935_at AW252428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252428 /DB_XREF=gi:6596019 /DB_XREF=UI-R-BJ0-adx-d-05-0-UI.s1 /CLONE=UI-R-BJ0-adx-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.1.1 /TIER=ConsEnd /STK=0 /UG=Rn.1 /UG_TITLE=ESTs AW252428 1383936_at BM386842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386842 /DB_XREF=gi:18186895 /DB_XREF=UI-R-CN1-cjh-m-08-0-UI.s1 /CLONE=UI-R-CN1-cjh-m-08-0-UI /FEA=EST /CNT=4 /TID=Rn.15970.1 /TIER=ConsEnd /STK=0 /UG=Rn.15970 /UG_TITLE=ESTs BM386842 elastin microfibril interfacer 2 Emilin2 316736 XM_001056498 /// XM_237520 0005576 // extracellular region // not recorded 0005515 // protein binding // not recorded 1383937_at BI284495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284495 /DB_XREF=gi:14937237 /DB_XREF=UI-R-CX0s-ccr-g-03-0-UI.s1 /CLONE=UI-R-CX0s-ccr-g-03-0-UI /FEA=EST /CNT=4 /TID=Rn.16142.1 /TIER=ConsEnd /STK=0 /UG=Rn.16142 /UG_TITLE=ESTs, Highly similar to AP2C_MOUSE TRANSCRIPTION FACTOR AP-2 GAMMA (AP2-GAMMA) (ACTIVATING ENHANCER-BINDING PROTEIN 2 GAMMA) (AP-2.2) (M.musculus) BI284495 transcription factor AP-2, gamma Tcfap2c 362280 NM_201420 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0008584 // male gonad development // not recorded /// 0030154 // cell differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0046983 // protein dimerization activity // not recorded 1383938_at BI286738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286738 /DB_XREF=gi:14941672 /DB_XREF=UI-R-CT0s-car-b-08-0-UI.s1 /CLONE=UI-R-CT0s-car-b-08-0-UI /FEA=EST /CNT=4 /TID=Rn.16853.1 /TIER=ConsEnd /STK=0 /UG=Rn.16853 /UG_TITLE=ESTs BI286738 1383939_at BG378849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378849 /DB_XREF=gi:13303321 /DB_XREF=UI-R-CV1-bvt-e-12-0-UI.s1 /CLONE=UI-R-CV1-bvt-e-12-0-UI /FEA=EST /CNT=4 /TID=Rn.23630.1 /TIER=ConsEnd /STK=0 /UG=Rn.23630 /UG_TITLE=ESTs BG378849 1383940_at BG375704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375704 /DB_XREF=gi:13300176 /DB_XREF=UI-R-CS0-bte-d-11-0-UI.s1 /CLONE=UI-R-CS0-bte-d-11-0-UI /FEA=EST /CNT=4 /TID=Rn.41428.1 /TIER=ConsEnd /STK=0 /UG=Rn.41428 /UG_TITLE=ESTs BG375704 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae) Nuf2 304951 NM_001012028 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0031262 // Ndc80 complex // not recorded /// 0031262 // Ndc80 complex // inferred from sequence or structural similarity /// 0031262 // Ndc80 complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383941_at BF411395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411395 /DB_XREF=gi:11399377 /DB_XREF=UI-R-CN0-bmj-h-07-0-UI.s1 /CLONE=UI-R-CN0-bmj-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.46394.1 /TIER=ConsEnd /STK=0 /UG=Rn.46394 /UG_TITLE=ESTs, Weakly similar to T17242 hypothetical protein DKFZp586B1417.1 (H.sapiens) BF411395 DENN/MADD domain containing 5B-like LOC100365679 100365679 XM_002726445 1383942_at BI275795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275795 /DB_XREF=gi:14920062 /DB_XREF=UI-R-CX0-bxg-f-12-0-UI.s1 /CLONE=UI-R-CX0-bxg-f-12-0-UI /FEA=EST /CNT=4 /TID=Rn.85.1 /TIER=ConsEnd /STK=0 /UG=Rn.85 /UG_TITLE=ESTs, Highly similar to SNX9_HUMAN SORTING NEXIN 9 (SH3 AND PX DOMAIN-CONTAINING PROTEIN 1) (SDP1 PROTEIN) (H.sapiens) BI275795 sorting nexin 9 Snx9 683687 NM_001127637 0007154 // cell communication // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1383943_at AA817863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817863 /DB_XREF=gi:4198387 /DB_XREF=UI-R-A0-ae-h-09-0-UI.s1 /CLONE=UI-R-A0-ae-h-09-0-UI /FEA=EST /CNT=4 /TID=Rn.16890.1 /TIER=ConsEnd /STK=0 /UG=Rn.16890 /UG_TITLE=ESTs, Weakly similar to T12545 hypothetical protein DKFZp434N074.1 (H.sapiens) AA817863 dynein, axonemal, heavy polypeptide 7 Dnah7 252893 XM_001065965 /// XM_002730026 0007018 // microtubule-based movement // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0030286 // dynein complex // inferred from electronic annotation /// 0035085 // cilium axoneme // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1383944_at AI144970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144970 /DB_XREF=gi:3666769 /DB_XREF=UI-R-BT0-po-b-10-0-UI.s1 /CLONE=UI-R-BT0-po-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.23819.1 /TIER=ConsEnd /STK=0 /UG=Rn.23819 /UG_TITLE=ESTs AI144970 1383945_at AA859827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859827 /DB_XREF=gi:4230367 /DB_XREF=UI-R-E0-cc-f-10-0-UI.s1 /CLONE=UI-R-E0-cc-f-10-0-UI /FEA=EST /CNT=4 /TID=Rn.24811.1 /TIER=ConsEnd /STK=0 /UG=Rn.24811 /UG_TITLE=ESTs, Moderately similar to URK1 MOUSE URIDINE KINASE (M.musculus) AA859827 uridine-cytidine kinase 2 Uck2 304944 NM_001102408 0007631 // feeding behavior // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0016579 // protein deubiquitination // traceable author statement /// 0048678 // response to axon injury // inferred from expression pattern /// 0071453 // cellular response to oxygen levels // inferred from expression pattern 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004849 // uridine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1383946_at AI137640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137640 /DB_XREF=gi:3638417 /DB_XREF=UI-R-C0-ha-d-06-0-UI.s1 /CLONE=UI-R-C0-ha-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.27475.1 /TIER=ConsEnd /STK=0 /UG=Rn.27475 /UG_TITLE=ESTs AI137640 claudin 1 Cldn1 65129 NM_031699 0016338 // calcium-independent cell-cell adhesion // not recorded /// 0016338 // calcium-independent cell-cell adhesion // inferred from sequence or structural similarity /// 0016338 // calcium-independent cell-cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005923 // tight junction // inferred from direct assay /// 0005923 // tight junction // not recorded /// 0005923 // tight junction // inferred from sequence or structural similarity /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030054 // cell junction // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from sequence or structural similarity /// 0042802 // identical protein binding // inferred from electronic annotation 1383947_at AI556074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556074 /DB_XREF=gi:4488437 /DB_XREF=UI-R-C2p-re-h-10-0-UI.s1 /CLONE=UI-R-C2p-re-h-10-0-UI /FEA=EST /CNT=4 /TID=Rn.35622.1 /TIER=ConsEnd /STK=0 /UG=Rn.35622 /UG_TITLE=ESTs AI556074 1383948_at AA998083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998083 /DB_XREF=gi:4287396 /DB_XREF=UI-R-C0-id-g-04-0-UI.s1 /CLONE=UI-R-C0-id-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.40312.2 /TIER=ConsEnd /STK=0 /UG=Rn.40312 /UG_TITLE=ESTs AA998083 similar to TPR repeat-containing protein KIAA1043 LOC304558 304558 XM_001080633 /// XM_222260 0005488 // binding // inferred from electronic annotation 1383949_at AI703880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI703880 /DB_XREF=gi:4991780 /DB_XREF=UI-R-AB1-yy-f-05-0-UI.s1 /CLONE=UI-R-AB1-yy-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.41407.1 /TIER=ConsEnd /STK=0 /UG=Rn.41407 /UG_TITLE=ESTs AI703880 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0016592 // mediator complex // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation 1383950_at BF410404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410404 /DB_XREF=gi:11398379 /DB_XREF=UI-R-CA1-bjx-b-02-0-UI.s1 /CLONE=UI-R-CA1-bjx-b-02-0-UI /FEA=EST /CNT=4 /TID=Rn.41190.1 /TIER=ConsEnd /STK=0 /UG=Rn.41190 /UG_TITLE=ESTs BF410404 1383951_at BE108661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108661 /DB_XREF=gi:8500766 /DB_XREF=UI-R-CA0-axg-h-09-0-UI.s1 /CLONE=UI-R-CA0-axg-h-09-0-UI /FEA=EST /CNT=4 /TID=Rn.51569.1 /TIER=ConsEnd /STK=0 /UG=Rn.51569 /UG_TITLE=ESTs BE108661 ring finger protein 145 Rnf145 287212 NM_001105778 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383952_at BI276252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276252 /DB_XREF=gi:14920978 /DB_XREF=UI-R-CX0-bxf-h-01-0-UI.s1 /CLONE=UI-R-CX0-bxf-h-01-0-UI /FEA=EST /CNT=4 /TID=Rn.16876.1 /TIER=ConsEnd /STK=0 /UG=Rn.16876 /UG_TITLE=ESTs, Moderately similar to T34532 hypothetical protein DKFZp434B1517.1 (H.sapiens) BI276252 microtubule associated monoxygenase, calponin and LIM domain containing 1 Mical1 294520 NM_001106397 0008152 // metabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // not recorded 0004497 // monooxygenase activity // not recorded /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1383953_at BM384968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384968 /DB_XREF=gi:18185021 /DB_XREF=UI-R-CN1-cjl-n-16-0-UI.s2 /CLONE=UI-R-CN1-cjl-n-16-0-UI /FEA=EST /CNT=4 /TID=Rn.52822.1 /TIER=ConsEnd /STK=0 /UG=Rn.52822 /UG_TITLE=ESTs, Moderately similar to repair protein XPG (M.musculus) BM384968 excision repair cross-complementing rodent repair deficiency, complementation group 5 Ercc5 301382 NM_001106910 0000718 // nucleotide-excision repair, DNA damage removal // not recorded /// 0006281 // DNA repair // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006283 // transcription-coupled nucleotide-excision repair // not recorded /// 0006289 // nucleotide-excision repair // inferred from electronic annotation /// 0006289 // nucleotide-excision repair // not recorded /// 0006295 // nucleotide-excision repair, DNA incision, 3'-to lesion // not recorded /// 0008340 // determination of adult lifespan // not recorded /// 0009411 // response to UV // not recorded /// 0009650 // UV protection // not recorded /// 0010225 // response to UV-C // not recorded /// 0035264 // multicellular organism growth // not recorded /// 0043066 // negative regulation of apoptosis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005675 // holo TFIIH complex // not recorded /// 0016591 // DNA-directed RNA polymerase II, holoenzyme // not recorded 0000405 // bubble DNA binding // not recorded /// 0003690 // double-stranded DNA binding // not recorded /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // not recorded /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // not recorded /// 0004520 // endodeoxyribonuclease activity // not recorded /// 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0047485 // protein N-terminus binding // not recorded 1383954_at BI273721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI273721 /DB_XREF=gi:14883958 /DB_XREF=UI-R-CW0-bvy-c-08-0-UI.s1 /CLONE=UI-R-CW0-bvy-c-08-0-UI /FEA=EST /CNT=4 /TID=Rn.16559.1 /TIER=ConsEnd /STK=0 /UG=Rn.16559 /UG_TITLE=ESTs BI273721 1383955_at BF554586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554586 /DB_XREF=gi:11664316 /DB_XREF=UI-R-C0-jh-b-11-0-UI.r1 /CLONE=UI-R-C0-jh-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.6443.2 /TIER=ConsEnd /STK=0 /UG=Rn.6443 /UG_TITLE=ESTs BF554586 1383956_at BI279202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279202 /DB_XREF=gi:14926788 /DB_XREF=UI-R-DA0-byk-e-02-0-UI.s1 /CLONE=UI-R-DA0-byk-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.77935.1 /TIER=ConsEnd /STK=0 /UG=Rn.77935 /UG_TITLE=ESTs, Weakly similar to A1I3 RAT ALPHA-1-INHIBITOR III PRECURSOR (R.norvegicus) BI279202 similar to ovostatin-2 RGD1565709 362442 XM_001066684 /// XM_342764 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0004866 // endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1383957_at BG376322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376322 /DB_XREF=gi:13300794 /DB_XREF=UI-R-CT0-buo-b-07-0-UI.s1 /CLONE=UI-R-CT0-buo-b-07-0-UI /FEA=EST /CNT=4 /TID=Rn.12883.1 /TIER=ConsEnd /STK=0 /UG=Rn.12883 /UG_TITLE=ESTs BG376322 nudix (nucleoside diphosphate linked moiety X)-type motif 3 Nudt3 294292 NM_001024243 0071544 // diphosphoinositol polyphosphate catabolic process // not recorded /// 0071544 // diphosphoinositol polyphosphate catabolic process // inferred from sequence or structural similarity /// 0071544 // diphosphoinositol polyphosphate catabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // not recorded /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // inferred from sequence or structural similarity /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1383958_at BG381524 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381524 /DB_XREF=gi:13305996 /DB_XREF=UI-R-CT0-buk-c-10-0-UI.s1 /CLONE=UI-R-CT0-buk-c-10-0-UI /FEA=EST /CNT=4 /TID=Rn.49950.1 /TIER=ConsEnd /STK=0 /UG=Rn.49950 /UG_TITLE=ESTs BG381524 cell division cycle associated 2 Cdca2 305984 NM_001107273 0051301 // cell division // inferred from electronic annotation 1383959_at BE096059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096059 /DB_XREF=gi:8486990 /DB_XREF=UI-R-C4-alz-a-04-0-UI.s1 /CLONE=UI-R-C4-alz-a-04-0-UI /FEA=EST /CNT=4 /TID=Rn.15759.1 /TIER=ConsEnd /STK=0 /UG=Rn.15759 /UG_TITLE=ESTs BE096059 leucine-zipper-like transcription regulator 1 Lztr1 360745 NM_001108326 0005515 // protein binding // inferred from electronic annotation 1383960_at BG376773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376773 /DB_XREF=gi:13301245 /DB_XREF=UI-R-CU0-buv-g-07-0-UI.s1 /CLONE=UI-R-CU0-buv-g-07-0-UI /FEA=EST /CNT=4 /TID=Rn.49976.1 /TIER=ConsEnd /STK=0 /UG=Rn.49976 /UG_TITLE=ESTs BG376773 peroxisomal biogenesis factor 16 Pex16 311203 NM_001012088 0006625 // protein targeting to peroxisome // not recorded /// 0007031 // peroxisome organization // not recorded /// 0016557 // peroxisome membrane biogenesis // not recorded /// 0016558 // protein import into peroxisome matrix // not recorded /// 0032581 // ER-dependent peroxisome organization // not recorded /// 0045046 // protein import into peroxisome membrane // not recorded 0005777 // peroxisome // not recorded /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // not recorded /// 0005779 // integral to peroxisomal membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded 0008022 // protein C-terminus binding // not recorded 1383961_a_at AI556478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556478 /DB_XREF=gi:4488841 /DB_XREF=UI-R-C2p-rk-c-07-0-UI.s1 /CLONE=UI-R-C2p-rk-c-07-0-UI /FEA=EST /CNT=4 /TID=Rn.66161.1 /TIER=ConsEnd /STK=0 /UG=Rn.66161 /UG_TITLE=ESTs AI556478 DnaJ (Hsp40) homolog, subfamily C, member 11 Dnajc11 362666 NM_001108694 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded 0031072 // heat shock protein binding // inferred from electronic annotation 1383962_at BI275530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275530 /DB_XREF=gi:14919521 /DB_XREF=UI-R-CX0-bwy-c-08-0-UI.s1 /CLONE=UI-R-CX0-bwy-c-08-0-UI /FEA=EST /CNT=4 /TID=Rn.23843.1 /TIER=ConsEnd /STK=0 /UG=Rn.23843 /UG_TITLE=ESTs BI275530 SIVA1, apoptosis-inducing factor Siva1 362791 NM_001100982 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006924 // activation-induced cell death of T cells // inferred from electronic annotation /// 0006924 // activation-induced cell death of T cells // not recorded /// 0007165 // signal transduction // not recorded /// 0008635 // activation of caspase activity by cytochrome c // inferred from electronic annotation /// 0008635 // activation of caspase activity by cytochrome c // not recorded /// 0019987 // negative regulation of anti-apoptosis // inferred from electronic annotation /// 0019987 // negative regulation of anti-apoptosis // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0001618 // viral receptor activity // inferred from electronic annotation /// 0001618 // viral receptor activity // not recorded /// 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005164 // tumor necrosis factor receptor binding // not recorded /// 0005175 // CD27 receptor binding // inferred from electronic annotation /// 0005175 // CD27 receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0008656 // caspase activator activity // inferred from electronic annotation /// 0008656 // caspase activator activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1383963_at AW521925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521925 /DB_XREF=gi:7164310 /DB_XREF=UI-R-BO0-agu-d-11-0-UI.s1 /CLONE=UI-R-BO0-agu-d-11-0-UI /FEA=EST /CNT=4 /TID=Rn.45287.1 /TIER=ConsEnd /STK=0 /UG=Rn.45287 /UG_TITLE=ESTs AW521925 1383964_at AI549551 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549551 /DB_XREF=gi:4467039 /DB_XREF=UI-R-C3-tt-c-05-0-UI.s1 /CLONE=UI-R-C3-tt-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.7482.1 /TIER=ConsEnd /STK=0 /UG=Rn.7482 /UG_TITLE=ESTs AI549551 1383965_at BI282103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282103 /DB_XREF=gi:14932515 /DB_XREF=UI-R-CU0s-cbw-f-01-0-UI.s1 /CLONE=UI-R-CU0s-cbw-f-01-0-UI /FEA=EST /CNT=4 /TID=Rn.13494.1 /TIER=ConsEnd /STK=0 /UG=Rn.13494 /UG_TITLE=ESTs BI282103 phosphatidylinositol glycan anchor biosynthesis, class Z Pigz 689116 NM_001109525 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from electronic annotation /// 0006370 // mRNA capping // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006408 // snRNA export from nucleus // inferred from sequence or structural similarity /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // inferred from electronic annotation /// 0006506 // GPI anchor biosynthetic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from sequence or structural similarity /// 0008380 // RNA splicing // inferred from electronic annotation /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0046833 // positive regulation of RNA export from nucleus // inferred from sequence or structural similarity /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005845 // mRNA cap binding complex // inferred from electronic annotation 0000026 // alpha-1,2-mannosyltransferase activity // not recorded /// 0000030 // mannosyltransferase activity // not recorded /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0000340 // RNA 7-methylguanosine cap binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1383966_at BG375431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375431 /DB_XREF=gi:13299903 /DB_XREF=UI-R-CV1-btb-c-10-0-UI.s1 /CLONE=UI-R-CV1-btb-c-10-0-UI /FEA=EST /CNT=4 /TID=Rn.20065.1 /TIER=ConsEnd /STK=0 /UG=Rn.20065 /UG_TITLE=ESTs BG375431 1383967_at BI275739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275739 /DB_XREF=gi:14919948 /DB_XREF=UI-R-CX0-bxg-b-02-0-UI.s1 /CLONE=UI-R-CX0-bxg-b-02-0-UI /FEA=EST /CNT=4 /TID=Rn.20516.1 /TIER=ConsEnd /STK=0 /UG=Rn.20516 /UG_TITLE=ESTs BI275739 1383968_at BI282560 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282560 /DB_XREF=gi:14933451 /DB_XREF=UI-R-DD0-bzy-d-07-0-UI.s1 /CLONE=UI-R-DD0-bzy-d-07-0-UI /FEA=EST /CNT=4 /TID=Rn.35001.1 /TIER=ConsEnd /STK=0 /UG=Rn.35001 /UG_TITLE=ESTs BI282560 1383969_at BI294901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294901 /DB_XREF=gi:14957808 /DB_XREF=UI-R-DK0-ced-d-12-0-UI.s1 /CLONE=UI-R-DK0-ced-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.47393.1 /TIER=ConsEnd /STK=0 /UG=Rn.47393 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) BI294901 zinc finger protein 658-like LOC100362658 100362658 XR_086123 1383970_at BI291647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291647 /DB_XREF=gi:14951389 /DB_XREF=UI-R-DN0-ciu-n-01-0-UI.s1 /CLONE=UI-R-DN0-ciu-n-01-0-UI /FEA=EST /CNT=4 /TID=Rn.63224.1 /TIER=ConsEnd /STK=0 /UG=Rn.63224 /UG_TITLE=ESTs, Highly similar to MUCL RAT INTESTINAL MUCIN-LIKE PROTEIN (R.norvegicus) BI291647 mucin 2, oligomeric mucus/gel-forming Muc2 24572 XM_002725730 0006915 // apoptosis // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0030336 // negative regulation of cell migration // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033189 // response to vitamin A // inferred from expression pattern /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern /// 0071559 // response to transforming growth factor beta stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0070702 // inner mucus layer // inferred from sequence or structural similarity /// 0070703 // outer mucus layer // inferred from sequence or structural similarity 0005515 // protein binding // not recorded /// 0046983 // protein dimerization activity // inferred from mutant phenotype 1383971_at AA818159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818159 /DB_XREF=gi:4198672 /DB_XREF=UI-R-A0-am-c-04-0-UI.s1 /CLONE=UI-R-A0-am-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.17786.1 /TIER=ConsEnd /STK=0 /UG=Rn.17786 /UG_TITLE=ESTs AA818159 1383972_at AW524136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524136 /DB_XREF=gi:7166521 /DB_XREF=UI-R-BO0-ahr-h-09-0-UI.s1 /CLONE=UI-R-BO0-ahr-h-09-0-UI /FEA=EST /CNT=4 /TID=Rn.19836.1 /TIER=ConsEnd /STK=0 /UG=Rn.19836 /UG_TITLE=ESTs AW524136 1383973_at AI071216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071216 /DB_XREF=gi:3397431 /DB_XREF=UI-R-C2-my-e-12-0-UI.s1 /CLONE=UI-R-C2-my-e-12-0-UI /FEA=EST /CNT=4 /TID=Rn.20470.1 /TIER=ConsEnd /STK=0 /UG=Rn.20470 /UG_TITLE=ESTs AI071216 similar to expressed sequence AW413431 RGD1559841 307816 XM_002725411 /// XM_226428 0005488 // binding // inferred from electronic annotation 1383974_at BG373166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373166 /DB_XREF=gi:13269703 /DB_XREF=UI-R-CV0-brp-d-09-0-UI.s1 /CLONE=UI-R-CV0-brp-d-09-0-UI /FEA=EST /CNT=4 /TID=Rn.27061.1 /TIER=ConsEnd /STK=0 /UG=Rn.27061 /UG_TITLE=ESTs BG373166 E74-like factor 5 Elf5 366142 NM_001108956 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007398 // ectoderm development // not recorded /// 0060644 // mammary gland epithelial cell differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1383975_at AW435364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435364 /DB_XREF=gi:6966671 /DB_XREF=UI-R-BJ0p-afc-f-06-0-UI.s1 /CLONE=UI-R-BJ0p-afc-f-06-0-UI /FEA=EST /CNT=4 /TID=Rn.7084.1 /TIER=ConsEnd /STK=0 /UG=Rn.7084 /UG_TITLE=ESTs AW435364 1383976_at AW527549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527549 /DB_XREF=gi:7169963 /DB_XREF=UI-R-BO1-ajv-e-09-0-UI.s1 /CLONE=UI-R-BO1-ajv-e-09-0-UI /FEA=EST /CNT=4 /TID=Rn.12713.1 /TIER=ConsEnd /STK=0 /UG=Rn.12713 /UG_TITLE=ESTs AW527549 1383977_a_at BM388500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388500 /DB_XREF=gi:18188553 /DB_XREF=UI-R-DZ0-ckm-m-15-0-UI.s1 /CLONE=UI-R-DZ0-ckm-m-15-0-UI /FEA=EST /CNT=4 /TID=Rn.16730.1 /TIER=ConsEnd /STK=0 /UG=Rn.16730 /UG_TITLE=ESTs, Weakly similar to Y112_HUMAN HYPOTHETICAL PROTEIN KIAA0112 (H.sapiens) BM388500 1383978_at BM384029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384029 /DB_XREF=gi:18184082 /DB_XREF=UI-R-DM1-ckb-i-14-0-UI.s1 /CLONE=UI-R-DM1-ckb-i-14-0-UI /FEA=EST /CNT=4 /TID=Rn.34561.1 /TIER=ConsEnd /STK=0 /UG=Rn.34561 /UG_TITLE=ESTs BM384029 1383979_at BM392389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392389 /DB_XREF=gi:18192442 /DB_XREF=UI-R-EB1-clf-e-18-0-UI.s1 /CLONE=UI-R-EB1-clf-e-18-0-UI /FEA=EST /CNT=4 /TID=Rn.19175.1 /TIER=ConsEnd /STK=0 /UG=Rn.19175 /UG_TITLE=ESTs BM392389 monoacylglycerol O-acyltransferase 2 Mogat2 681211 NM_001109436 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // not recorded /// 0006651 // diacylglycerol biosynthetic process // inferred from electronic annotation /// 0006651 // diacylglycerol biosynthetic process // not recorded /// 0019432 // triglyceride biosynthetic process // inferred from electronic annotation /// 0019432 // triglyceride biosynthetic process // not recorded /// 0050892 // intestinal absorption // inferred from electronic annotation /// 0050892 // intestinal absorption // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded 0003846 // 2-acylglycerol O-acyltransferase activity // inferred from electronic annotation /// 0003846 // 2-acylglycerol O-acyltransferase activity // not recorded /// 0016407 // acetyltransferase activity // inferred from electronic annotation /// 0016407 // acetyltransferase activity // not recorded /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation 1383980_at BI293388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293388 /DB_XREF=gi:14954835 /DB_XREF=UI-R-DK0-cdo-f-06-0-UI.s1 /CLONE=UI-R-DK0-cdo-f-06-0-UI /FEA=EST /CNT=4 /TID=Rn.49623.1 /TIER=ConsEnd /STK=0 /UG=Rn.49623 /UG_TITLE=ESTs BI293388 1383981_at BE102377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102377 /DB_XREF=gi:8494476 /DB_XREF=UI-R-BT1-aql-h-01-0-UI.s1 /CLONE=UI-R-BT1-aql-h-01-0-UI /FEA=EST /CNT=4 /TID=Rn.50333.1 /TIER=ConsEnd /STK=0 /UG=Rn.50333 /UG_TITLE=ESTs BE102377 tumor protein p53 binding protein, 2 Tp53bp2 305025 XM_001063503 /// XM_002724896 /// XM_002728044 /// XM_223012 0006917 // induction of apoptosis // not recorded /// 0007417 // central nervous system development // not recorded /// 0007507 // heart development // not recorded /// 0009792 // embryo development ending in birth or egg hatching // not recorded /// 0010212 // response to ionizing radiation // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0051059 // NF-kappaB binding // not recorded 1383982_at BE112063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112063 /DB_XREF=gi:8504133 /DB_XREF=UI-R-BJ1-ave-g-12-0-UI.s1 /CLONE=UI-R-BJ1-ave-g-12-0-UI /FEA=EST /CNT=4 /TID=Rn.9102.1 /TIER=ConsEnd /STK=0 /UG=Rn.9102 /UG_TITLE=ESTs BE112063 1383983_at BF399458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399458 /DB_XREF=gi:11384466 /DB_XREF=UI-R-CA1-bjb-l-23-0-UI.s1 /CLONE=UI-R-CA1-bjb-l-23-0-UI /FEA=EST /CNT=4 /TID=Rn.15703.1 /TIER=ConsEnd /STK=0 /UG=Rn.15703 /UG_TITLE=ESTs BF399458 1383984_at BM389978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389978 /DB_XREF=gi:18190031 /DB_XREF=UI-R-CN1-cjo-g-02-0-UI.s1 /CLONE=UI-R-CN1-cjo-g-02-0-UI /FEA=EST /CNT=4 /TID=Rn.46173.1 /TIER=ConsEnd /STK=0 /UG=Rn.46173 /UG_TITLE=ESTs BM389978 1383985_at AW523000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523000 /DB_XREF=gi:7165385 /DB_XREF=UI-R-BO0-ahm-b-07-0-UI.s1 /CLONE=UI-R-BO0-ahm-b-07-0-UI /FEA=EST /CNT=4 /TID=Rn.18406.1 /TIER=ConsEnd /STK=0 /UG=Rn.18406 /UG_TITLE=ESTs AW523000 cadherin 15 Cdh15 361432 NM_207613 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0031594 // neuromuscular junction // not recorded 0005509 // calcium ion binding // inferred from electronic annotation 1383986_at AI071098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071098 /DB_XREF=gi:3397313 /DB_XREF=UI-R-C2-ms-b-10-0-UI.s1 /CLONE=UI-R-C2-ms-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.20081.1 /TIER=ConsEnd /STK=0 /UG=Rn.20081 /UG_TITLE=ESTs AI071098 1383987_at AI112807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112807 /DB_XREF=gi:3512756 /DB_XREF=UI-R-E1-fp-a-09-0-UI.s1 /CLONE=UI-R-E1-fp-a-09-0-UI /FEA=EST /CNT=4 /TID=Rn.36267.1 /TIER=ConsEnd /STK=0 /UG=Rn.36267 /UG_TITLE=ESTs AI112807 1383988_at AI028887 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI028887 /DB_XREF=gi:4294746 /DB_XREF=UI-R-C0-ik-f-11-0-UI.s1 /CLONE=UI-R-C0-ik-f-11-0-UI /FEA=EST /CNT=4 /TID=Rn.9542.1 /TIER=ConsEnd /STK=0 /UG=Rn.9542 /UG_TITLE=ESTs AI028887 hypothetical protein LOC690274 LOC690274 690274 XM_001073940 1383989_at AI030701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030701 /DB_XREF=gi:3248527 /DB_XREF=UI-R-C0-jo-e-08-0-UI.s1 /CLONE=UI-R-C0-jo-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.54686.1 /TIER=ConsEnd /STK=0 /UG=Rn.54686 /UG_TITLE=ESTs AI030701 SRY (sex determining region Y)-box 4 Sox4 364712 XM_001068302 /// XM_344594 0001666 // response to hypoxia // inferred from direct assay /// 0002328 // pro-B cell differentiation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007507 // heart development // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0030217 // T cell differentiation // not recorded /// 0031017 // exocrine pancreas development // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0050821 // protein stabilization // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded 1383990_at AW534014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534014 /DB_XREF=gi:7176428 /DB_XREF=UI-R-C4-alr-h-11-0-UI.s1 /CLONE=UI-R-C4-alr-h-11-0-UI /FEA=EST /CNT=4 /TID=Rn.24397.1 /TIER=ConsEnd /STK=0 /UG=Rn.24397 /UG_TITLE=ESTs AW534014 1383991_at BE096426 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096426 /DB_XREF=gi:8487357 /DB_XREF=UI-R-BU0-apg-a-01-0-UI.s1 /CLONE=UI-R-BU0-apg-a-01-0-UI /FEA=EST /CNT=4 /TID=Rn.26829.1 /TIER=ConsEnd /STK=0 /UG=Rn.26829 /UG_TITLE=ESTs BE096426 leucine rich repeat containing 8 family, member E Lrrc8e 304203 NM_001034139 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1383992_at BM383990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383990 /DB_XREF=gi:18184043 /DB_XREF=UI-R-DM1-ckb-a-12-0-UI.s1 /CLONE=UI-R-DM1-ckb-a-12-0-UI /FEA=EST /CNT=4 /TID=Rn.18134.1 /TIER=ConsEnd /STK=0 /UG=Rn.18134 /UG_TITLE=ESTs BM383990 1383993_at AI454751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454751 /DB_XREF=gi:4295916 /DB_XREF=UI-R-C2p-qj-g-05-0-UI.s1 /CLONE=UI-R-C2p-qj-g-05-0-UI /FEA=EST /CNT=4 /TID=Rn.23729.1 /TIER=ConsEnd /STK=0 /UG=Rn.23729 /UG_TITLE=ESTs AI454751 1383994_at BI289342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289342 /DB_XREF=gi:14946807 /DB_XREF=UI-R-DK0-cfl-g-04-0-UI.s1 /CLONE=UI-R-DK0-cfl-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.19380.1 /TIER=ConsEnd /STK=0 /UG=Rn.19380 /UG_TITLE=ESTs BI289342 Synaptotagmin III Syt3 25731 NM_019122 0006810 // transport // inferred from electronic annotation /// 0016079 // synaptic vesicle exocytosis // traceable author statement /// 0017156 // calcium ion-dependent exocytosis // traceable author statement 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // non-traceable author statement /// 0045202 // synapse // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005509 // calcium ion binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005544 // calcium-dependent phospholipid binding // inferred from direct assay /// 0019905 // syntaxin binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1383995_at BG670749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670749 /DB_XREF=gi:13892848 /DB_XREF=DRNBFA09 /CLONE=DRNBFA09 /FEA=EST /CNT=6 /TID=Rn.20788.1 /TIER=ConsEnd /STK=0 /UG=Rn.20788 /UG_TITLE=ESTs, Weakly similar to I60307 beta-galactosidase, alpha peptide - Escherichia coli (E.coli) BG670749 1383996_at BI281608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281608 /DB_XREF=gi:14931509 /DB_XREF=UI-R-CT0s-cau-d-04-0-UI.s1 /CLONE=UI-R-CT0s-cau-d-04-0-UI /FEA=EST /CNT=5 /TID=Rn.40991.1 /TIER=ConsEnd /STK=0 /UG=Rn.40991 /UG_TITLE=ESTs BI281608 Mediator complex subunit 26 Med26 306328 NM_001107300 0006350 // transcription // inferred from electronic annotation /// 0006354 // RNA elongation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0016592 // mediator complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016455 // RNA polymerase II transcription mediator activity // not recorded 1383997_at AA874850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA874850 /DB_XREF=gi:4230733 /DB_XREF=UI-R-E0-cg-h-05-0-UI.s1 /CLONE=UI-R-E0-cg-h-05-0-UI /FEA=EST /CNT=5 /TID=Rn.3145.1 /TIER=ConsEnd /STK=0 /UG=Rn.3145 /UG_TITLE=ESTs AA874850 1383998_at BF545601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545601 /DB_XREF=gi:11636708 /DB_XREF=UI-R-C1-jy-h-07-0-UI.r1 /CLONE=UI-R-C1-jy-h-07-0-UI /FEA=EST /CNT=5 /TID=Rn.76177.1 /TIER=ConsEnd /STK=0 /UG=Rn.76177 /UG_TITLE=ESTs BF545601 SMEK homolog 2, suppressor of mek1 (Dictyostelium) Smek2 360993 NM_001108367 0019216 // regulation of lipid metabolic process // inferred from mutant phenotype 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1383999_at AW527651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527651 /DB_XREF=gi:7170065 /DB_XREF=UI-R-BT1-ajz-f-08-0-UI.s1 /CLONE=UI-R-BT1-ajz-f-08-0-UI /FEA=EST /CNT=5 /TID=Rn.24781.1 /TIER=ConsEnd /STK=0 /UG=Rn.24781 /UG_TITLE=ESTs AW527651 1384000_at BF560932 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF560932 /DB_XREF=gi:11670710 /DB_XREF=UI-R-E1-fi-c-03-0-UI.r1 /CLONE=UI-R-E1-fi-c-03-0-UI /FEA=EST /CNT=5 /TID=Rn.8637.2 /TIER=ConsEnd /STK=0 /UG=Rn.8637 /UG_TITLE=ESTs BF560932 SRY (sex determining region Y)-box 4 Sox4 364712 XM_001068302 /// XM_344594 0001666 // response to hypoxia // inferred from direct assay /// 0002328 // pro-B cell differentiation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007507 // heart development // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0030217 // T cell differentiation // not recorded /// 0031017 // exocrine pancreas development // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0050821 // protein stabilization // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded 1384001_at AW143174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143174 /DB_XREF=gi:6163073 /DB_XREF=EST293470 /CLONE=RGIBE94 /FEA=EST /CNT=4 /TID=Rn.81864.1 /TIER=ConsEnd /STK=0 /UG=Rn.81864 /UG_TITLE=ESTs AW143174 1384002_at BG663077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663077 /DB_XREF=gi:13884999 /DB_XREF=DRA07H07 /CLONE=DRA07H07 /FEA=EST /CNT=4 /TID=Rn.23898.1 /TIER=ConsEnd /STK=0 /UG=Rn.23898 /UG_TITLE=ESTs, Weakly similar to AT1H MOUSE POTENTIAL PHOSPHOLIPID-TRANSPORTING ATPASE IH (M.musculus) BG663077 ATPase, class VI, type 11B Atp11b 361929 XM_001067830 /// XM_342228 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0015914 // phospholipid transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004012 // phospholipid-translocating ATPase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation 1384003_at BF288235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288235 /DB_XREF=gi:11219305 /DB_XREF=EST452826 /CLONE=RGIGR31 /FEA=EST /CNT=4 /TID=Rn.43321.1 /TIER=ConsEnd /STK=0 /UG=Rn.43321 /UG_TITLE=ESTs BF288235 Similar to RIKEN cDNA 5230400G24 RGD1310230 301563 NM_001039015 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1384004_at AI030360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030360 /DB_XREF=gi:3248186 /DB_XREF=UI-R-C0-jh-a-01-0-UI.s1 /CLONE=UI-R-C0-jh-a-01-0-UI /FEA=EST /CNT=4 /TID=Rn.18475.1 /TIER=ConsEnd /STK=0 /UG=Rn.18475 /UG_TITLE=ESTs AI030360 G protein-coupled receptor 158 Gpr158 291352 NM_001170326 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1384005_at BG662895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG662895 /DB_XREF=gi:13884817 /DB_XREF=DRA05A03 /CLONE=DRA05A03 /FEA=EST /CNT=4 /TID=Rn.34015.1 /TIER=ConsEnd /STK=0 /UG=Rn.34015 /UG_TITLE=ESTs, Weakly similar to CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT A (R.norvegicus) BG662895 down-regulator of transcription 1 Dr1 289881 NM_001011914 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1384006_at AI045457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045457 /DB_XREF=gi:3292276 /DB_XREF=UI-R-C1-jz-e-10-0-UI.s2 /CLONE=UI-R-C1-jz-e-10-0-UI /FEA=EST /CNT=4 /TID=Rn.22534.1 /TIER=ConsEnd /STK=0 /UG=Rn.22534 /UG_TITLE=ESTs AI045457 1384007_at BG668983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668983 /DB_XREF=gi:13890905 /DB_XREF=DRN04A06 /CLONE=DRN04A06 /FEA=EST /CNT=4 /TID=Rn.72402.1 /TIER=ConsEnd /STK=0 /UG=Rn.72402 /UG_TITLE=ESTs, Weakly similar to T17320 hypothetical protein DKFZp564J0863.1 (H.sapiens) BG668983 atlastin GTPase 1 Atl1 362750 NM_001009831 0007029 // endoplasmic reticulum organization // not recorded /// 0007029 // endoplasmic reticulum organization // inferred from sequence or structural similarity /// 0007409 // axonogenesis // inferred from mutant phenotype /// 0051260 // protein homooligomerization // not recorded /// 0051260 // protein homooligomerization // inferred from sequence or structural similarity 0000137 // Golgi cis cisterna // inferred from direct assay /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from mutant phenotype /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from sequence or structural similarity 1384008_at AI555224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555224 /DB_XREF=gi:4487587 /DB_XREF=UI-R-C2p-qu-f-07-0-UI.s1 /CLONE=UI-R-C2p-qu-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.22645.1 /TIER=ConsEnd /STK=0 /UG=Rn.22645 /UG_TITLE=ESTs AI555224 1384009_at AI535383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535383 /DB_XREF=gi:4449518 /DB_XREF=UI-R-C3-si-d-05-0-UI.s1 /CLONE=UI-R-C3-si-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.34817.1 /TIER=ConsEnd /STK=0 /UG=Rn.34817 /UG_TITLE=ESTs AI535383 nuclear prelamin A recognition factor Narf 360681 NM_001039207 0005634 // nucleus // inferred from electronic annotation /// 0005638 // lamin filament // not recorded /// 0031981 // nuclear lumen // not recorded 0005521 // lamin binding // not recorded 1384010_at AW920178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920178 /DB_XREF=gi:8085893 /DB_XREF=EST351391 /CLONE=RGIGQ65 /FEA=EST /CNT=4 /TID=Rn.23744.1 /TIER=ConsEnd /STK=0 /UG=Rn.23744 /UG_TITLE=ESTs AW920178 glucosidase, alpha; neutral C Ganc 24382 NM_001145840 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004558 // alpha-glucosidase activity // not recorded /// 0030246 // carbohydrate binding // inferred from electronic annotation 1384011_a_at BF287623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287623 /DB_XREF=gi:11218693 /DB_XREF=EST452214 /CLONE=RGIGI25 /FEA=EST /CNT=4 /TID=Rn.23820.1 /TIER=ConsEnd /STK=0 /UG=Rn.23820 /UG_TITLE=ESTs, Weakly similar to I37386 fas-activated serinethreonine kinase (H.sapiens) BF287623 FAST kinase domains 3 Fastkd3 290946 NM_001082574 0006915 // apoptosis // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1384012_at AW524995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524995 /DB_XREF=gi:7167380 /DB_XREF=UI-R-BJ0p-aiv-f-10-0-UI.s1 /CLONE=UI-R-BJ0p-aiv-f-10-0-UI /FEA=EST /CNT=4 /TID=Rn.24745.1 /TIER=ConsEnd /STK=0 /UG=Rn.24745 /UG_TITLE=ESTs AW524995 1384013_at BF524215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF524215 /DB_XREF=gi:11632182 /DB_XREF=UI-R-Y0-va-d-06-0-UI.r1 /CLONE=UI-R-Y0-va-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.27743.1 /TIER=ConsEnd /STK=0 /UG=Rn.27743 /UG_TITLE=ESTs, Weakly similar to S36126 neural cell adhesion molecule L1 - rat (R.norvegicus) BF524215 1384014_at BE109675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109675 /DB_XREF=gi:8501780 /DB_XREF=UI-R-BJ1-avq-h-03-0-UI.s1 /CLONE=UI-R-BJ1-avq-h-03-0-UI /FEA=EST /CNT=4 /TID=Rn.21026.1 /TIER=ConsEnd /STK=0 /UG=Rn.21026 /UG_TITLE=ESTs BE109675 1384015_at AI044920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044920 /DB_XREF=gi:3291739 /DB_XREF=UI-R-C1-kk-g-02-0-UI.s1 /CLONE=UI-R-C1-kk-g-02-0-UI /FEA=EST /CNT=4 /TID=Rn.60043.1 /TIER=ConsEnd /STK=0 /UG=Rn.60043 /UG_TITLE=ESTs AI044920 cytoplasmic linker associated protein 1 Clasp1 304740 XM_001053715 /// XM_002727994 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0001578 // microtubule bundle formation // inferred from electronic annotation /// 0007026 // negative regulation of microtubule depolymerization // inferred from electronic annotation /// 0010458 // exit from mitosis // inferred from electronic annotation /// 0031111 // negative regulation of microtubule polymerization or depolymerization // inferred from electronic annotation 0000776 // kinetochore // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0030981 // cortical microtubule cytoskeleton // inferred from electronic annotation /// 0031592 // centrosomal corona // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0043515 // kinetochore binding // inferred from electronic annotation /// 0051010 // microtubule plus-end binding // inferred from electronic annotation 1384016_at AI044937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044937 /DB_XREF=gi:3291756 /DB_XREF=UI-R-C1-ke-b-05-0-UI.s1 /CLONE=UI-R-C1-ke-b-05-0-UI /FEA=EST /CNT=4 /TID=Rn.19675.1 /TIER=ConsEnd /STK=0 /UG=Rn.19675 /UG_TITLE=ESTs, Highly similar to T02672 hypothetical protein R31449_3 (H.sapiens) AI044937 similar to R31449_3 RGD1563634 500790 NM_001081447 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1384017_at AI058817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058817 /DB_XREF=gi:3332594 /DB_XREF=UI-R-C1-jy-b-02-0-UI.s2 /CLONE=UI-R-C1-jy-b-02-0-UI /FEA=EST /CNT=4 /TID=Rn.18993.1 /TIER=ConsEnd /STK=0 /UG=Rn.18993 /UG_TITLE=ESTs AI058817 Leucine-rich repeat kinase 1 Lrrk1 308703 NM_001191624 /// XM_001056955 /// XM_218760 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded 0004672 // protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1384018_at BG663446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663446 /DB_XREF=gi:13885368 /DB_XREF=DRAAAJB11 /CLONE=DRAAAJB11 /FEA=EST /CNT=4 /TID=Rn.12044.1 /TIER=ConsEnd /STK=0 /UG=Rn.12044 /UG_TITLE=ESTs BG663446 1384019_a_at BM383449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383449 /DB_XREF=gi:18183502 /DB_XREF=UI-R-DM1-ckb-l-22-0-UI.s1 /CLONE=UI-R-DM1-ckb-l-22-0-UI /FEA=EST /CNT=4 /TID=Rn.2981.1 /TIER=ConsEnd /STK=0 /UG=Rn.2981 /UG_TITLE=ESTs BM383449 1384020_at AA944187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944187 /DB_XREF=gi:3104103 /DB_XREF=EST199686 /CLONE=REMAD42 /FEA=EST /CNT=4 /TID=Rn.7689.1 /TIER=ConsEnd /STK=0 /UG=Rn.7689 /UG_TITLE=ESTs AA944187 1384021_at BF406950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406950 /DB_XREF=gi:11394965 /DB_XREF=UI-R-BJ2-bpq-d-07-0-UI.s1 /CLONE=UI-R-BJ2-bpq-d-07-0-UI /FEA=EST /CNT=4 /TID=Rn.11957.1 /TIER=ConsEnd /STK=0 /UG=Rn.11957 /UG_TITLE=ESTs BF406950 COMM domain containing 7 Commd7 296285 NM_001030029 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0033209 // tumor necrosis factor-mediated signaling pathway // inferred from electronic annotation /// 0033209 // tumor necrosis factor-mediated signaling pathway // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051059 // NF-kappaB binding // inferred from electronic annotation /// 0051059 // NF-kappaB binding // not recorded 1384022_at BI288173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288173 /DB_XREF=gi:14944497 /DB_XREF=UI-R-DK0-cdc-g-05-0-UI.s1 /CLONE=UI-R-DK0-cdc-g-05-0-UI /FEA=EST /CNT=4 /TID=Rn.48838.1 /TIER=ConsEnd /STK=0 /UG=Rn.48838 /UG_TITLE=ESTs BI288173 ArfGAP with FG repeats 1 Agfg1 363266 NM_001135596 0001675 // acrosome assembly // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007289 // spermatid nucleus differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation /// 0045109 // intermediate filament organization // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384023_at AI229556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229556 /DB_XREF=gi:3813443 /DB_XREF=EST226251 /CLONE=REMCI22 /FEA=EST /CNT=4 /TID=Rn.49268.1 /TIER=ConsEnd /STK=0 /UG=Rn.49268 /UG_TITLE=ESTs, Moderately similar to SPIN MOUSE SPINDLIN (M.musculus) AI229556 spindlin family, member 2A Spin2a 317395 NM_001127657 0007276 // gamete generation // inferred from electronic annotation 1384024_at BI301225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301225 /DB_XREF=gi:14977505 /DB_XREF=UI-R-DK0-cek-b-04-0-UI.s2 /CLONE=UI-R-DK0-cek-b-04-0-UI /FEA=EST /CNT=4 /TID=Rn.27080.1 /TIER=ConsEnd /STK=0 /UG=Rn.27080 /UG_TITLE=ESTs BI301225 bromodomain containing 1 Brd1 315210 NM_001108103 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384025_at AA943432 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943432 /DB_XREF=gi:3103348 /DB_XREF=EST198931 /CLONE=RBRAJ70 /FEA=EST /CNT=4 /TID=Rn.7560.1 /TIER=ConsEnd /STK=0 /UG=Rn.7560 /UG_TITLE=ESTs AA943432 1384026_at AI070446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070446 /DB_XREF=gi:3396697 /DB_XREF=UI-R-C2-mq-d-08-0-UI.s1 /CLONE=UI-R-C2-mq-d-08-0-UI /FEA=EST /CNT=4 /TID=Rn.11612.1 /TIER=ConsEnd /STK=0 /UG=Rn.11612 /UG_TITLE=ESTs AI070446 1384027_a_at AI072042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072042 /DB_XREF=gi:3398236 /DB_XREF=UI-R-C2-nd-g-08-0-UI.s1 /CLONE=UI-R-C2-nd-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.20680.1 /TIER=ConsEnd /STK=0 /UG=Rn.20680 /UG_TITLE=ESTs AI072042 1384028_at AI072042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072042 /DB_XREF=gi:3398236 /DB_XREF=UI-R-C2-nd-g-08-0-UI.s1 /CLONE=UI-R-C2-nd-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.20680.1 /TIER=ConsEnd /STK=0 /UG=Rn.20680 /UG_TITLE=ESTs AI072042 1384029_at BF554085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554085 /DB_XREF=gi:11663815 /DB_XREF=UI-R-C0-hk-f-01-0-UI.r1 /CLONE=UI-R-C0-hk-f-01-0-UI /FEA=EST /CNT=4 /TID=Rn.12469.2 /TIER=ConsEnd /STK=0 /UG=Rn.12469 /UG_TITLE=ESTs, Highly similar to DNA-REPAIR PROTEIN COMPLEMENTING XP-A CELLS HOMOLOG (M.musculus) BF554085 xeroderma pigmentosum, complementation group A Xpa 298074 NM_001106656 0000718 // nucleotide-excision repair, DNA damage removal // not recorded /// 0006281 // DNA repair // not recorded /// 0006289 // nucleotide-excision repair // inferred from electronic annotation /// 0006289 // nucleotide-excision repair // not recorded /// 0006979 // response to oxidative stress // not recorded /// 0008630 // DNA damage response, signal transduction resulting in induction of apoptosis // not recorded /// 0009411 // response to UV // not recorded /// 0009636 // response to toxin // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019904 // protein domain specific binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1384030_at AI030261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030261 /DB_XREF=gi:3248087 /DB_XREF=UI-R-C0-it-f-05-0-UI.s1 /CLONE=UI-R-C0-it-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.18447.1 /TIER=ConsEnd /STK=0 /UG=Rn.18447 /UG_TITLE=ESTs AI030261 Thioredoxin domain containing 17 Txndc17 287474 NM_001105805 0033209 // tumor necrosis factor-mediated signaling pathway // inferred from electronic annotation /// 0033209 // tumor necrosis factor-mediated signaling pathway // not recorded 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004601 // peroxidase activity // inferred from electronic annotation /// 0004601 // peroxidase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0009055 // electron carrier activity // not recorded /// 0047134 // protein-disulfide reductase activity // inferred from electronic annotation /// 0047134 // protein-disulfide reductase activity // not recorded 1384031_at AW532656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532656 /DB_XREF=gi:7175070 /DB_XREF=UI-R-BS0-amk-e-07-0-UI.s1 /CLONE=UI-R-BS0-amk-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.47990.1 /TIER=ConsEnd /STK=0 /UG=Rn.47990 /UG_TITLE=ESTs AW532656 EF-hand domain (C-terminal) containing 1 Efhc1 301295 NM_001122947 0005929 // cilium // not recorded /// 0005930 // axoneme // not recorded /// 0019861 // flagellum // not recorded /// 0043025 // neuronal cell body // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded 1384032_at AI058837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058837 /DB_XREF=gi:3332614 /DB_XREF=UI-R-C1-jy-e-06-0-UI.s2 /CLONE=UI-R-C1-jy-e-06-0-UI /FEA=EST /CNT=4 /TID=Rn.18999.1 /TIER=ConsEnd /STK=0 /UG=Rn.18999 /UG_TITLE=ESTs AI058837 1384033_at BF284307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284307 /DB_XREF=gi:11215377 /DB_XREF=EST448898 /CLONE=RGIEO18 /FEA=EST /CNT=4 /TID=Rn.17643.1 /TIER=ConsEnd /STK=0 /UG=Rn.17643 /UG_TITLE=ESTs BF284307 vestigial like 2 (Drosophila) Vgll2 309772 NM_001107630 0007519 // skeletal muscle tissue development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003713 // transcription coactivator activity // not recorded /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1384034_at D86817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D86817 /DB_XREF=gi:1736401 /DB_XREF=D86817 /FEA=EST /CNT=4 /TID=Rn.48605.2 /TIER=ConsEnd /STK=0 /UG=Rn.48605 /UG_TITLE=ESTs, Weakly similar to vesicle-associated membrane protein 3 (Rattus norvegicus) (R.norvegicus) D86817 vesicle-associated membrane protein 4 Vamp4 364033 NM_001108856 0016192 // vesicle-mediated transport // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 1384035_at AW536030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW536030 /DB_XREF=gi:7178444 /DB_XREF=UI-R-BS0-aog-f-06-0-UI.s1 /CLONE=UI-R-BS0-aog-f-06-0-UI /FEA=EST /CNT=4 /TID=Rn.12307.1 /TIER=ConsEnd /STK=0 /UG=Rn.12307 /UG_TITLE=ESTs AW536030 Similar to liver-specific bHLH-Zip transcription factor LOC685277 685277 XM_001063122 /// XM_002724859 0009749 // response to glucose stimulus // not recorded /// 0030073 // insulin secretion // not recorded /// 0030154 // cell differentiation // not recorded /// 0031016 // pancreas development // not recorded /// 0048873 // homeostasis of number of cells within a tissue // not recorded 1384036_s_at AW536030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW536030 /DB_XREF=gi:7178444 /DB_XREF=UI-R-BS0-aog-f-06-0-UI.s1 /CLONE=UI-R-BS0-aog-f-06-0-UI /FEA=EST /CNT=4 /TID=Rn.12307.1 /TIER=ConsEnd /STK=0 /UG=Rn.12307 /UG_TITLE=ESTs AW536030 Similar to liver-specific bHLH-Zip transcription factor LOC685277 685277 XM_001063122 /// XM_002724859 0009749 // response to glucose stimulus // not recorded /// 0030073 // insulin secretion // not recorded /// 0030154 // cell differentiation // not recorded /// 0031016 // pancreas development // not recorded /// 0048873 // homeostasis of number of cells within a tissue // not recorded 1384037_at AI044777 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044777 /DB_XREF=gi:3290840 /DB_XREF=UI-R-C1-jt-b-03-0-UI.s1 /CLONE=UI-R-C1-jt-b-03-0-UI /FEA=EST /CNT=4 /TID=Rn.44190.2 /TIER=ConsEnd /STK=0 /UG=Rn.44190 /UG_TITLE=ESTs AI044777 signal-induced proliferation-associated 1 like 2 Sipa1l2 361442 NM_001009704 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1384038_at BF563211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563211 /DB_XREF=gi:11672941 /DB_XREF=UI-R-BO1-ajg-g-11-0-UI.r1 /CLONE=UI-R-BO1-ajg-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.47081.1 /TIER=ConsEnd /STK=0 /UG=Rn.47081 /UG_TITLE=ESTs BF563211 1384039_at BF558912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558912 /DB_XREF=gi:11668642 /DB_XREF=UI-R-A1-eq-f-11-0-UI.r1 /CLONE=UI-R-A1-eq-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.82093.1 /TIER=ConsEnd /STK=0 /UG=Rn.82093 /UG_TITLE=ESTs BF558912 calmodulin regulated spectrin-associated protein 1-like 1 Camsap1l1 289400 NM_001134503 0005515 // protein binding // not recorded 1384040_at BE121108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121108 /DB_XREF=gi:8513213 /DB_XREF=UI-R-CA0-bau-b-06-0-UI.s1 /CLONE=UI-R-CA0-bau-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.49001.1 /TIER=ConsEnd /STK=0 /UG=Rn.49001 /UG_TITLE=ESTs, Moderately similar to Y373_HUMAN HYPOTHETICAL PROTEIN KIAA0373 (H.sapiens) BE121108 centrosomal protein 290 Cep290 314787 NM_001135755 0015031 // protein transport // not recorded 0000930 // gamma-tubulin complex // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // not recorded /// 0005829 // cytosol // not recorded /// 0009986 // cell surface // not recorded /// 0032391 // photoreceptor connecting cilium // not recorded 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0051011 // microtubule minus-end binding // not recorded 1384041_at BG671630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671630 /DB_XREF=gi:13893729 /DB_XREF=DRNBVG04 /CLONE=DRNBVG04 /FEA=EST /CNT=3 /TID=Rn.23265.2 /TIER=ConsEnd /STK=0 /UG=Rn.23265 /UG_TITLE=ESTs BG671630 1384042_at BE108303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108303 /DB_XREF=gi:8500408 /DB_XREF=UI-R-BS1-ayx-g-02-0-UI.s1 /CLONE=UI-R-BS1-ayx-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.24173.1 /TIER=ConsEnd /STK=0 /UG=Rn.24173 /UG_TITLE=ESTs BE108303 1384043_at BG667918 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667918 /DB_XREF=gi:13889840 /DB_XREF=DRABQE09 /CLONE=DRABQE09 /FEA=EST /CNT=3 /TID=Rn.71630.1 /TIER=ConsEnd /STK=0 /UG=Rn.71630 /UG_TITLE=ESTs BG667918 1384044_at AA964882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964882 /DB_XREF=gi:4279756 /DB_XREF=UI-R-C0-gr-c-11-0-UI.s1 /CLONE=UI-R-C0-gr-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.11937.1 /TIER=ConsEnd /STK=0 /UG=Rn.11937 /UG_TITLE=ESTs, Highly similar to I39151 beta-sarcoglycan (H.sapiens) AA964882 sarcoglycan, beta (dystrophin-associated glycoprotein) Sgcb 680229 NM_001191068 /// XM_001056227 /// XM_002724956 0007010 // cytoskeleton organization // inferred from electronic annotation 0016010 // dystrophin-associated glycoprotein complex // not recorded /// 0016012 // sarcoglycan complex // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1384045_at BF288380 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288380 /DB_XREF=gi:11219450 /DB_XREF=EST452971 /CLONE=RGIGT18 /FEA=EST /CNT=3 /TID=Rn.55568.1 /TIER=ConsEnd /STK=0 /UG=Rn.55568 /UG_TITLE=ESTs, Highly similar to JC4683 T-cell receptor gamma chain C region - rat (R.norvegicus) BF288380 1384046_at BF543195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543195 /DB_XREF=gi:11634302 /DB_XREF=UI-R-AF1-aaw-e-06-0-UI.r1 /CLONE=UI-R-AF1-aaw-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.32694.1 /TIER=ConsEnd /STK=0 /UG=Rn.32694 /UG_TITLE=ESTs, Moderately similar to Y009_HUMAN HYPOTHETICAL PROTEIN KIAA0009 (H.sapiens) BF543195 1384047_at BF563221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563221 /DB_XREF=gi:11672951 /DB_XREF=UI-R-BO1-ajh-a-06-0-UI.r1 /CLONE=UI-R-BO1-ajh-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.24300.1 /TIER=ConsEnd /STK=0 /UG=Rn.24300 /UG_TITLE=ESTs BF563221 1384048_at BI297740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297740 /DB_XREF=gi:14974020 /DB_XREF=UI-R-CV2-cha-b-03-0-UI.s1 /CLONE=UI-R-CV2-cha-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.58741.1 /TIER=ConsEnd /STK=0 /UG=Rn.58741 /UG_TITLE=ESTs BI297740 similar to EMSY protein RGD1310712 361607 XR_085723 /// XR_086129 1384049_at BE103610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103610 /DB_XREF=gi:8495710 /DB_XREF=UI-R-BX0-arg-c-09-0-UI.s1 /CLONE=UI-R-BX0-arg-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.41175.1 /TIER=ConsEnd /STK=0 /UG=Rn.41175 /UG_TITLE=ESTs, Highly similar to AP2B_MOUSE Transcription factor AP-2 beta (AP2-beta) (Activating enhancer-binding protein 2 beta) (M.musculus) BE103610 transcription factor AP-2 beta Tcfap2b 301285 NM_001106896 0001822 // kidney development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0010226 // response to lithium ion // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0045817 // positive regulation of transcription from RNA polymerase II promoter, global // not recorded 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0046983 // protein dimerization activity // not recorded 1384050_at AI454535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454535 /DB_XREF=gi:4294405 /DB_XREF=UI-R-BT0-pw-b-08-0-UI.s1 /CLONE=UI-R-BT0-pw-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.15071.1 /TIER=ConsEnd /STK=0 /UG=Rn.15071 /UG_TITLE=ESTs AI454535 budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae) Bub3 361662 NM_001047906 0000070 // mitotic sister chromatid segregation // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0008608 // attachment of spindle microtubules to kinetochore // inferred from electronic annotation /// 0051983 // regulation of chromosome segregation // inferred from electronic annotation /// 0071173 // spindle assembly checkpoint // inferred from electronic annotation 0000776 // kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1384051_at BF390066 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390066 /DB_XREF=gi:11374908 /DB_XREF=UI-R-BS2-bdr-h-03-0-UI.s1 /CLONE=UI-R-BS2-bdr-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.26623.1 /TIER=ConsEnd /STK=0 /UG=Rn.26623 /UG_TITLE=ESTs BF390066 1384052_at AI145819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145819 /DB_XREF=gi:3667618 /DB_XREF=UI-R-BT0-qi-g-11-0-UI.s1 /CLONE=UI-R-BT0-qi-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.24011.1 /TIER=ConsEnd /STK=0 /UG=Rn.24011 /UG_TITLE=ESTs AI145819 1384053_at BF556415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556415 /DB_XREF=gi:11666145 /DB_XREF=UI-R-A1-es-d-07-0-UI.r1 /CLONE=UI-R-A1-es-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.32667.1 /TIER=ConsEnd /STK=0 /UG=Rn.32667 /UG_TITLE=ESTs, Highly similar to Y126_HUMAN HYPOTHETICAL PROTEIN KIAA0126 (H.sapiens) BF556415 ubiquitination factor E4A (UFD2 homolog, yeast) Ube4a 315608 NM_207610 0000209 // protein polyubiquitination // inferred from electronic annotation /// 0000209 // protein polyubiquitination // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0034450 // ubiquitin-ubiquitin ligase activity // inferred from electronic annotation /// 0034450 // ubiquitin-ubiquitin ligase activity // not recorded 1384054_at BF556666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556666 /DB_XREF=gi:11666396 /DB_XREF=UI-R-E0-dn-b-11-0-UI.r1 /CLONE=UI-R-E0-dn-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.24480.1 /TIER=ConsEnd /STK=0 /UG=Rn.24480 /UG_TITLE=ESTs BF556666 1384055_at BF288144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288144 /DB_XREF=gi:11219214 /DB_XREF=EST452735 /CLONE=RGIGQ06 /FEA=EST /CNT=3 /TID=Rn.55504.1 /TIER=ConsEnd /STK=0 /UG=Rn.55504 /UG_TITLE=ESTs BF288144 1384056_at BF410980 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410980 /DB_XREF=gi:11398955 /DB_XREF=UI-R-CN0-bmi-c-08-0-UI.s1 /CLONE=UI-R-CN0-bmi-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.23671.1 /TIER=ConsEnd /STK=0 /UG=Rn.23671 /UG_TITLE=ESTs BF410980 Fibroblast growth factor receptor 3 Fgfr3 84489 NM_053429 0000165 // MAPKKK cascade // not recorded /// 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0002009 // morphogenesis of an epithelium // not recorded /// 0002009 // morphogenesis of an epithelium // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007267 // cell-cell signaling // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from direct assay /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0031398 // positive regulation of protein ubiquitination // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // inferred from direct assay /// 0045597 // positive regulation of cell differentiation // not recorded /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045879 // negative regulation of smoothened signaling pathway // not recorded /// 0045879 // negative regulation of smoothened signaling pathway // inferred from electronic annotation /// 0048839 // inner ear development // not recorded /// 0048839 // inner ear development // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0051216 // cartilage development // not recorded /// 0051216 // cartilage development // inferred from electronic annotation /// 0060113 // inner ear receptor cell differentiation // not recorded /// 0060113 // inner ear receptor cell differentiation // inferred from electronic annotation /// 0090080 // positive regulation of MAPKKK cascade by fibroblast growth factor receptor signaling pathway // not recorded /// 0090080 // positive regulation of MAPKKK cascade by fibroblast growth factor receptor signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009898 // internal side of plasma membrane // not recorded /// 0009898 // internal side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005007 // fibroblast growth factor receptor activity // inferred from direct assay /// 0005007 // fibroblast growth factor receptor activity // inferred from electronic annotation /// 0005007 // fibroblast growth factor receptor activity // not recorded /// 0005007 // fibroblast growth factor receptor activity // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008083 // growth factor activity // non-traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // inferred from physical interaction /// 0017134 // fibroblast growth factor binding // not recorded /// 0042802 // identical protein binding // not recorded 1384057_at BF390984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390984 /DB_XREF=gi:11375831 /DB_XREF=UI-R-CA1-bce-g-10-0-UI.s1 /CLONE=UI-R-CA1-bce-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.57352.1 /TIER=ConsEnd /STK=0 /UG=Rn.57352 /UG_TITLE=ESTs, Weakly similar to T17278 hypothetical protein DKFZp434E1335.1 (H.sapiens) BF390984 ankyrin repeat domain 6 Ankrd6 500430 NM_001134969 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1384058_at AI059089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059089 /DB_XREF=gi:3332866 /DB_XREF=UI-R-C1-lr-b-04-0-UI.s1 /CLONE=UI-R-C1-lr-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.21035.1 /TIER=ConsEnd /STK=0 /UG=Rn.21035 /UG_TITLE=ESTs AI059089 1384059_at BE115159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115159 /DB_XREF=gi:8507264 /DB_XREF=UI-R-BS1-axt-h-09-0-UI.s1 /CLONE=UI-R-BS1-axt-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.12032.1 /TIER=ConsEnd /STK=0 /UG=Rn.12032 /UG_TITLE=ESTs BE115159 1384060_at BG663208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663208 /DB_XREF=gi:13885130 /DB_XREF=DRAAAFA09 /CLONE=DRAAAFA09 /FEA=EST /CNT=3 /TID=Rn.79455.1 /TIER=ConsEnd /STK=0 /UG=Rn.79455 /UG_TITLE=ESTs, Weakly similar to TYROSINE-PROTEIN KINASE JAK2 (R.norvegicus) BG663208 Janus kinase 1 Jak1 84598 NM_053466 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007167 // enzyme linked receptor protein signaling pathway // inferred from electronic annotation /// 0007167 // enzyme linked receptor protein signaling pathway // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0046677 // response to antibiotic // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005131 // growth hormone receptor binding // inferred from physical interaction /// 0005131 // growth hormone receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1384061_at AI029659 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029659 /DB_XREF=gi:4300077 /DB_XREF=UI-R-C0-jg-e-08-0-UI.s1 /CLONE=UI-R-C0-jg-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.18289.1 /TIER=ConsEnd /STK=0 /UG=Rn.18289 /UG_TITLE=ESTs AI029659 1384062_at AI072443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072443 /DB_XREF=gi:3398637 /DB_XREF=UI-R-C2-nk-e-01-0-UI.s1 /CLONE=UI-R-C2-nk-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.21764.1 /TIER=ConsEnd /STK=0 /UG=Rn.21764 /UG_TITLE=ESTs AI072443 1384063_at AA958001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA958001 /DB_XREF=gi:4277891 /DB_XREF=UI-R-E1-gc-g-01-0-UI.s1 /CLONE=UI-R-E1-gc-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.9468.1 /TIER=ConsEnd /STK=0 /UG=Rn.9468 /UG_TITLE=ESTs AA958001 collagen triple helix repeat containing 1 Cthrc1 282836 NM_172333 0016477 // cell migration // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation 1384064_at AI502703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502703 /DB_XREF=gi:4400554 /DB_XREF=UI-R-C1-le-g-11-0-UI.s1 /CLONE=UI-R-C1-le-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.35467.1 /TIER=ConsEnd /STK=0 /UG=Rn.35467 /UG_TITLE=ESTs, Weakly similar to T17294 hypothetical protein DKFZp434G032.1 (H.sapiens) AI502703 keratin 23 (histone deacetylase inducible) Krt23 287678 NM_001008753 0005882 // intermediate filament // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 1384065_at BG663648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663648 /DB_XREF=gi:13885570 /DB_XREF=DRAAALF12 /CLONE=DRAAALF12 /FEA=EST /CNT=3 /TID=Rn.23380.1 /TIER=ConsEnd /STK=0 /UG=Rn.23380 /UG_TITLE=ESTs BG663648 1384066_at AW921699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921699 /DB_XREF=gi:8087523 /DB_XREF=EST353003 /CLONE=RGIIF31 /FEA=EST /CNT=3 /TID=Rn.55180.1 /TIER=ConsEnd /STK=0 /UG=Rn.55180 /UG_TITLE=ESTs AW921699 hypothetical LOC314168 RGD1307621 314168 NM_001108025 1384067_at BF288361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288361 /DB_XREF=gi:11219431 /DB_XREF=EST452952 /CLONE=RGIGS86 /FEA=EST /CNT=3 /TID=Rn.7050.1 /TIER=ConsEnd /STK=0 /UG=Rn.7050 /UG_TITLE=ESTs BF288361 1384068_at BI295150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295150 /DB_XREF=gi:14958307 /DB_XREF=UI-R-DK0-ceg-d-05-0-UI.s1 /CLONE=UI-R-DK0-ceg-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.50526.1 /TIER=ConsEnd /STK=0 /UG=Rn.50526 /UG_TITLE=ESTs BI295150 cytoskeleton associated protein 2 Ckap2 306575 NM_001169139 0005737 // cytoplasm // not recorded /// 0015630 // microtubule cytoskeleton // not recorded 1384069_at BG670059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670059 /DB_XREF=gi:13892158 /DB_XREF=DRNAAPA04 /CLONE=DRNAAPA04 /FEA=EST /CNT=3 /TID=Rn.40798.1 /TIER=ConsEnd /STK=0 /UG=Rn.40798 /UG_TITLE=ESTs BG670059 low density lipoprotein receptor-related protein 11 Lrp11 292462 NM_001106217 1384070_at BF544982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF544982 /DB_XREF=gi:11636089 /DB_XREF=UI-R-C2p-rh-g-03-0-UI.r1 /CLONE=UI-R-C2p-rh-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.45029.1 /TIER=ConsEnd /STK=0 /UG=Rn.45029 /UG_TITLE=ESTs BF544982 Gem-interacting protein Gmip 306357 NM_001107308 0007165 // signal transduction // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // not recorded /// 0034259 // negative regulation of Rho GTPase activity // not recorded 0005622 // intracellular // inferred from electronic annotation 0005100 // Rho GTPase activator activity // not recorded /// 0005515 // protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1384071_at AI555488 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555488 /DB_XREF=gi:4487851 /DB_XREF=UI-R-C2p-qq-h-11-0-UI.s1 /CLONE=UI-R-C2p-qq-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.19371.1 /TIER=ConsEnd /STK=0 /UG=Rn.19371 /UG_TITLE=ESTs AI555488 1384072_at BI288828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288828 /DB_XREF=gi:14945787 /DB_XREF=UI-R-DK0-cdf-d-03-0-UI.s1 /CLONE=UI-R-DK0-cdf-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.20791.1 /TIER=ConsEnd /STK=0 /UG=Rn.20791 /UG_TITLE=ESTs BI288828 1384073_at BF543577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543577 /DB_XREF=gi:11634684 /DB_XREF=UI-R-C3-tt-e-04-0-UI.r1 /CLONE=UI-R-C3-tt-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.44252.1 /TIER=ConsEnd /STK=0 /UG=Rn.44252 /UG_TITLE=ESTs, Weakly similar to T26686 hypothetical protein Y38F1A.6 - Caenorhabditis elegans (C.elegans) BF543577 alcohol dehydrogenase, iron containing, 1 Adhfe1 362474 NM_001025423 0015993 // molecular hydrogen transport // not recorded /// 0015993 // molecular hydrogen transport // inferred from sequence or structural similarity /// 0015993 // molecular hydrogen transport // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047988 // hydroxyacid-oxoacid transhydrogenase activity // not recorded /// 0047988 // hydroxyacid-oxoacid transhydrogenase activity // inferred from sequence or structural similarity /// 0047988 // hydroxyacid-oxoacid transhydrogenase activity // inferred from electronic annotation 1384074_at AW920694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920694 /DB_XREF=gi:8086508 /DB_XREF=EST351998 /CLONE=RGIHB20 /FEA=EST /CNT=3 /TID=Rn.55707.1 /TIER=ConsEnd /STK=0 /UG=Rn.55707 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) AW920694 1384075_at BF523960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523960 /DB_XREF=gi:11631927 /DB_XREF=UI-R-Y0-vg-b-02-0-UI.r1 /CLONE=UI-R-Y0-vg-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.21621.1 /TIER=ConsEnd /STK=0 /UG=Rn.21621 /UG_TITLE=ESTs BF523960 1384076_at BF567204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567204 /DB_XREF=gi:11676934 /DB_XREF=UI-R-BO0-ahr-h-12-0-UI.r1 /CLONE=UI-R-BO0-ahr-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.64224.1 /TIER=ConsEnd /STK=0 /UG=Rn.64224 /UG_TITLE=ESTs BF567204 cache domain containing 1 Cachd1 298267 NM_001191758 /// XM_001056642 /// XM_233227 0016020 // membrane // inferred from electronic annotation 1384077_at BF282029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282029 /DB_XREF=gi:11213099 /DB_XREF=EST446620 /CLONE=RGIDA88 /FEA=EST /CNT=3 /TID=Rn.24128.1 /TIER=ConsEnd /STK=0 /UG=Rn.24128 /UG_TITLE=ESTs BF282029 1384078_at AA875072 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875072 /DB_XREF=gi:4230953 /DB_XREF=UI-R-E0-cf-e-04-0-UI.s1 /CLONE=UI-R-E0-cf-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.32204.1 /TIER=ConsEnd /STK=0 /UG=Rn.32204 /UG_TITLE=ESTs AA875072 1384079_at AI715477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715477 /DB_XREF=gi:5032730 /DB_XREF=UI-R-Y0-abq-a-10-0-UI.s1 /CLONE=UI-R-Y0-abq-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.72695.1 /TIER=ConsEnd /STK=0 /UG=Rn.72695 /UG_TITLE=ESTs, Weakly similar to EPIDERMAL GROWTH FACTOR RECEPTOR KINASE SUBSTRATE EPS8 (M.musculus) AI715477 EPS8-like 1 Eps8l1 361503 NM_001108467 1384080_at AA924955 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924955 /DB_XREF=gi:4236146 /DB_XREF=UI-R-A1-ef-c-10-0-UI.s1 /CLONE=UI-R-A1-ef-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.32629.1 /TIER=ConsEnd /STK=0 /UG=Rn.32629 /UG_TITLE=ESTs AA924955 1384081_at BG372643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372643 /DB_XREF=gi:13269180 /DB_XREF=UI-R-CV1-brs-f-10-0-UI.s1 /CLONE=UI-R-CV1-brs-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.12513.1 /TIER=ConsEnd /STK=0 /UG=Rn.12513 /UG_TITLE=ESTs BG372643 1384082_at AW526768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526768 /DB_XREF=gi:7169182 /DB_XREF=UI-R-BT1-ake-g-09-0-UI.s1 /CLONE=UI-R-BT1-ake-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.46312.1 /TIER=ConsEnd /STK=0 /UG=Rn.46312 /UG_TITLE=ESTs, Weakly similar to ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 1 (R.norvegicus) AW526768 1384083_at AW532159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532159 /DB_XREF=gi:7174573 /DB_XREF=UI-R-C4-alj-a-10-0-UI.s1 /CLONE=UI-R-C4-alj-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.14631.1 /TIER=ConsEnd /STK=0 /UG=Rn.14631 /UG_TITLE=ESTs AW532159 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 B3gntl1 367384 NM_001015035 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1384084_at AW433952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433952 /DB_XREF=gi:6965259 /DB_XREF=UI-R-BJ0p-afn-e-06-0-UI.s1 /CLONE=UI-R-BJ0p-afn-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.16874.1 /TIER=ConsEnd /STK=0 /UG=Rn.16874 /UG_TITLE=ESTs AW433952 LOC361719 RGD1308106 361719 NM_001134575 1384085_at AW144332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144332 /DB_XREF=gi:6164231 /DB_XREF=EST294628 /CLONE=RGICQ36 /FEA=EST /CNT=3 /TID=Rn.25310.1 /TIER=ConsEnd /STK=0 /UG=Rn.25310 /UG_TITLE=ESTs AW144332 general transcription factor IIH, polypeptide 5 Gtf2h5 502227 NM_001126088 0006289 // nucleotide-excision repair // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1384086_at BG671196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671196 /DB_XREF=gi:13893295 /DB_XREF=DRNBMG11 /CLONE=DRNBMG11 /FEA=EST /CNT=3 /TID=Rn.61835.1 /TIER=ConsEnd /STK=0 /UG=Rn.61835 /UG_TITLE=ESTs BG671196 1384087_at AA925049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925049 /DB_XREF=gi:4236240 /DB_XREF=UI-R-A1-en-e-09-0-UI.s1 /CLONE=UI-R-A1-en-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.6719.1 /TIER=ConsEnd /STK=0 /UG=Rn.6719 /UG_TITLE=ESTs AA925049 1384088_at AI070289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070289 /DB_XREF=gi:3396540 /DB_XREF=UI-R-Y0-lt-b-06-0-UI.s1 /CLONE=UI-R-Y0-lt-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.19706.1 /TIER=ConsEnd /STK=0 /UG=Rn.19706 /UG_TITLE=ESTs, Weakly similar to zinc finger protein 30 (M.musculus) AI070289 similar to zinc finger protein 748 isoform 2 LOC680222 680222 XM_002725461 /// XM_002728447 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1384089_at AI575052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575052 /DB_XREF=gi:4545048 /DB_XREF=UI-R-G0-um-g-04-0-UI.s1 /CLONE=UI-R-G0-um-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.21688.1 /TIER=ConsEnd /STK=0 /UG=Rn.21688 /UG_TITLE=ESTs AI575052 RAB guanine nucleotide exchange factor (GEF) 1 Rabgef1 360797 NM_001108333 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1384090_at AW920561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920561 /DB_XREF=gi:8086373 /DB_XREF=EST351865 /CLONE=RGIGY74 /FEA=EST /CNT=3 /TID=Rn.55666.1 /TIER=ConsEnd /STK=0 /UG=Rn.55666 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) AW920561 Phosphatidylinositol glycan anchor biosynthesis, class O Pigo 313341 XM_001069442 /// XM_233141 0006506 // GPI anchor biosynthetic process // not recorded /// 0016254 // preassembly of GPI anchor in ER membrane // not recorded 0005789 // endoplasmic reticulum membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384091_at AA899909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899909 /DB_XREF=gi:4232401 /DB_XREF=UI-R-E0-dh-c-12-0-UI.s1 /CLONE=UI-R-E0-dh-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.14995.1 /TIER=ConsEnd /STK=0 /UG=Rn.14995 /UG_TITLE=ESTs AA899909 1384092_at AW921638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921638 /DB_XREF=gi:8087462 /DB_XREF=EST352942 /CLONE=RGIID67 /FEA=EST /CNT=3 /TID=Rn.72997.1 /TIER=ConsEnd /STK=0 /UG=Rn.72997 /UG_TITLE=ESTs AW921638 Complement component 1, q subcomponent-like 3 C1ql3 680404 NM_001109403 0005515 // protein binding // not recorded 1384093_at AW523562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523562 /DB_XREF=gi:7165947 /DB_XREF=UI-R-BO0-ahu-e-06-0-UI.s1 /CLONE=UI-R-BO0-ahu-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.45681.1 /TIER=ConsEnd /STK=0 /UG=Rn.45681 /UG_TITLE=ESTs AW523562 complement component 1, q subcomponent-like 3 C1ql3 680404 NM_001109403 0005515 // protein binding // not recorded 1384094_at BF414316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414316 /DB_XREF=gi:11402346 /DB_XREF=UI-R-BJ2-bop-e-03-0-UI.s1 /CLONE=UI-R-BJ2-bop-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.25461.1 /TIER=ConsEnd /STK=0 /UG=Rn.25461 /UG_TITLE=ESTs BF414316 1384095_at BF524140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF524140 /DB_XREF=gi:11632107 /DB_XREF=UI-R-Y0-ux-d-06-0-UI.r1 /CLONE=UI-R-Y0-ux-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.46469.1 /TIER=ConsEnd /STK=0 /UG=Rn.46469 /UG_TITLE=ESTs, Moderately similar to T08739 hypothetical protein DKFZp586F1018.1 (H.sapiens) BF524140 myosin VIIA and Rab interacting protein Myrip 360034 NM_182844 0006886 // intracellular protein transport // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded 0001750 // photoreceptor outer segment // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0042470 // melanosome // not recorded /// 0045202 // synapse // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017022 // myosin binding // not recorded /// 0017137 // Rab GTPase binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1384096_at BI279347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279347 /DB_XREF=gi:14927076 /DB_XREF=UI-R-DA0-byn-c-09-0-UI.s1 /CLONE=UI-R-DA0-byn-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.43362.1 /TIER=ConsEnd /STK=0 /UG=Rn.43362 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) BI279347 1384097_at AI146081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146081 /DB_XREF=gi:3667880 /DB_XREF=UI-R-A1-ew-e-04-0-UI.s1 /CLONE=UI-R-A1-ew-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.19690.1 /TIER=ConsEnd /STK=0 /UG=Rn.19690 /UG_TITLE=ESTs AI146081 1384098_at AA925710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925710 /DB_XREF=gi:4236901 /DB_XREF=UI-R-A1-ec-d-04-0-UI.s1 /CLONE=UI-R-A1-ec-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.15586.1 /TIER=ConsEnd /STK=0 /UG=Rn.15586 /UG_TITLE=ESTs AA925710 ring finger protein 125 Rnf125 361296 NM_001108424 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384099_at AA997670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997670 /DB_XREF=gi:4280952 /DB_XREF=UI-R-C0-hm-c-11-0-UI.s1 /CLONE=UI-R-C0-hm-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.12540.2 /TIER=ConsEnd /STK=0 /UG=Rn.12540 /UG_TITLE=ESTs, Weakly similar to KE4_MOUSE HISTIDINE-RICH MEMBRANE PROTEIN KE4 (M.musculus) AA997670 solute carrier family 39 (zinc transporter), member 6 Slc39a6 291733 NM_001024745 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006829 // zinc ion transport // inferred from electronic annotation /// 0030001 // metal ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0046873 // metal ion transmembrane transporter activity // inferred from electronic annotation 1384100_at AI043947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043947 /DB_XREF=gi:3290682 /DB_XREF=UI-R-C0-jk-f-12-0-UI.s1 /CLONE=UI-R-C0-jk-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.64283.1 /TIER=ConsEnd /STK=0 /UG=Rn.64283 /UG_TITLE=ESTs AI043947 1384101_at BM388523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388523 /DB_XREF=gi:18188576 /DB_XREF=UI-R-DZ0-ckm-c-02-0-UI.s1 /CLONE=UI-R-DZ0-ckm-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.107.1 /TIER=ConsEnd /STK=0 /UG=Rn.107 /UG_TITLE=ESTs, Highly similar to WASL_RAT Neural Wiskott-Aldrich syndrome protein (N-WASP) (R.norvegicus) BM388523 Wiskott-Aldrich syndrome-like Wasl 682507 NM_001110365 0006461 // protein complex assembly // inferred from electronic annotation /// 0008154 // actin polymerization or depolymerization // inferred from electronic annotation /// 0009617 // response to bacterium // inferred from electronic annotation /// 0009617 // response to bacterium // not recorded /// 0030031 // cell projection assembly // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0000139 // Golgi membrane // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384102_at AI231520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231520 /DB_XREF=gi:3815400 /DB_XREF=EST228208 /CLONE=REMDL30 /FEA=EST /CNT=3 /TID=Rn.24580.1 /TIER=ConsEnd /STK=0 /UG=Rn.24580 /UG_TITLE=ESTs AI231520 Gen homolog 1, endonuclease (Drosophila) Gen1 298884 NM_001106717 0006281 // DNA repair // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation 1384103_at BE106350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106350 /DB_XREF=gi:8498452 /DB_XREF=UI-R-BO1-asm-h-11-0-UI.s1 /CLONE=UI-R-BO1-asm-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.40997.1 /TIER=ConsEnd /STK=0 /UG=Rn.40997 /UG_TITLE=ESTs, Weakly similar to GIP-like (Drosophila melanogaster) (D.melanogaster) BE106350 similar to novel protein (HT036) RGD1561416 500536 XM_002726584 /// XM_002729532 1384104_at BE115892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115892 /DB_XREF=gi:8507962 /DB_XREF=UI-R-BS1-axv-f-04-0-UI.s1 /CLONE=UI-R-BS1-axv-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.32001.1 /TIER=ConsEnd /STK=0 /UG=Rn.32001 /UG_TITLE=ESTs BE115892 1384105_at BE109571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109571 /DB_XREF=gi:8501676 /DB_XREF=UI-R-BJ1-avp-f-10-0-UI.s1 /CLONE=UI-R-BJ1-avp-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.15661.1 /TIER=ConsEnd /STK=0 /UG=Rn.15661 /UG_TITLE=ESTs BE109571 Zinc finger protein 830 Znf830 497967 NM_001037360 0001832 // blastocyst growth // inferred from electronic annotation /// 0001832 // blastocyst growth // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007049 // cell cycle // not recorded /// 0007067 // mitosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0046872 // metal ion binding // inferred from electronic annotation 1384106_at AW141276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141276 /DB_XREF=gi:6161061 /DB_XREF=EST291317 /CLONE=RGIBK17 /FEA=EST /CNT=3 /TID=Rn.78624.1 /TIER=ConsEnd /STK=0 /UG=Rn.78624 /UG_TITLE=ESTs, Weakly similar to H21P03.3a.p (Caenorhabditis elegans) (C.elegans) AW141276 sphingomyelin synthase 1 Sgms1 353229 NM_181386 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // inferred from electronic annotation /// 0006686 // sphingomyelin biosynthetic process // not recorded /// 0006686 // sphingomyelin biosynthetic process // inferred from sequence or structural similarity /// 0006686 // sphingomyelin biosynthetic process // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0016049 // cell growth // not recorded /// 0016049 // cell growth // inferred from sequence or structural similarity /// 0016049 // cell growth // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0071222 // cellular response to lipopolysaccharide // inferred from expression pattern /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern 0000138 // Golgi trans cisterna // inferred from electronic annotation /// 0000138 // Golgi trans cisterna // not recorded /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // not recorded /// 0030173 // integral to Golgi membrane // inferred from sequence or structural similarity /// 0030173 // integral to Golgi membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0033188 // sphingomyelin synthase activity // not recorded /// 0033188 // sphingomyelin synthase activity // inferred from sequence or structural similarity /// 0033188 // sphingomyelin synthase activity // inferred from electronic annotation /// 0047493 // ceramide cholinephosphotransferase activity // not recorded /// 0047493 // ceramide cholinephosphotransferase activity // inferred from sequence or structural similarity /// 0047493 // ceramide cholinephosphotransferase activity // inferred from electronic annotation 1384107_at AI071397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071397 /DB_XREF=gi:3397612 /DB_XREF=UI-R-C2-nb-a-09-0-UI.s1 /CLONE=UI-R-C2-nb-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.20525.1 /TIER=ConsEnd /STK=0 /UG=Rn.20525 /UG_TITLE=ESTs AI071397 1384108_at AI044826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044826 /DB_XREF=gi:3291645 /DB_XREF=UI-R-C1-ki-e-05-0-UI.s1 /CLONE=UI-R-C1-ki-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.37763.2 /TIER=ConsEnd /STK=0 /UG=Rn.37763 /UG_TITLE=ESTs, Highly similar to CC45_MOUSE CDC45-RELATED PROTEIN (PORC-PI-1) (M.musculus) AI044826 CDC45 cell division cycle 45-like (S. cerevisiae) Cdc45l 287961 NM_001105866 0006260 // DNA replication // not recorded /// 0006270 // DNA-dependent DNA replication initiation // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // not recorded 0005515 // protein binding // not recorded 1384109_at BF285329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285329 /DB_XREF=gi:11216399 /DB_XREF=EST449920 /CLONE=RGIFD60 /FEA=EST /CNT=3 /TID=Rn.55295.1 /TIER=ConsEnd /STK=0 /UG=Rn.55295 /UG_TITLE=ESTs BF285329 1384110_at AI045668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045668 /DB_XREF=gi:3292487 /DB_XREF=UI-R-C0-jg-a-06-0-UI.s2 /CLONE=UI-R-C0-jg-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.18309.1 /TIER=ConsEnd /STK=0 /UG=Rn.18309 /UG_TITLE=ESTs AI045668 similar to mKIAA0716 protein RGD1561724 366608 XR_085852 /// XR_086276 1384111_at AA955354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955354 /DB_XREF=gi:4237710 /DB_XREF=UI-R-A1-ey-b-05-0-UI.s1 /CLONE=UI-R-A1-ey-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.32763.1 /TIER=ConsEnd /STK=0 /UG=Rn.32763 /UG_TITLE=ESTs, Highly similar to STA4 MOUSE SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 4 (M.musculus) AA955354 signal transducer and activator of transcription 4 Stat4 367264 NM_001012226 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006917 // induction of apoptosis // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007259 // JAK-STAT cascade // inferred from mutant phenotype /// 0007259 // JAK-STAT cascade // traceable author statement /// 0007584 // response to nutrient // inferred from direct assay /// 0008015 // blood circulation // inferred from mutant phenotype /// 0008283 // cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0009612 // response to mechanical stimulus // inferred from direct assay /// 0009617 // response to bacterium // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from direct assay /// 0034097 // response to cytokine stimulus // inferred from direct assay /// 0042493 // response to drug // inferred from direct assay /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043330 // response to exogenous dsRNA // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0051591 // response to cAMP // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded 1384112_at BI289470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289470 /DB_XREF=gi:14947074 /DB_XREF=UI-R-DK0-cfh-d-09-0-UI.s1 /CLONE=UI-R-DK0-cfh-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.19143.1 /TIER=ConsEnd /STK=0 /UG=Rn.19143 /UG_TITLE=ESTs BI289470 5' nucleotidase, ecto Nt5e 58813 NM_021576 0006164 // purine nucleotide biosynthetic process // inferred from mutant phenotype /// 0006196 // AMP catabolic process // inferred from electronic annotation /// 0006196 // AMP catabolic process // not recorded /// 0009166 // nucleotide catabolic process // inferred from electronic annotation /// 0016311 // dephosphorylation // not recorded /// 0046085 // adenosine metabolic process // inferred from direct assay /// 0046086 // adenosine biosynthetic process // inferred from electronic annotation /// 0046086 // adenosine biosynthetic process // not recorded /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0031225 // anchored to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0008198 // ferrous iron binding // inferred from direct assay /// 0008253 // 5'-nucleotidase activity // inferred from direct assay /// 0008253 // 5'-nucleotidase activity // inferred from mutant phenotype /// 0008253 // 5'-nucleotidase activity // not recorded /// 0008253 // 5'-nucleotidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384113_at AI044541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044541 /DB_XREF=gi:3291402 /DB_XREF=UI-R-C1-kc-g-07-0-UI.s1 /CLONE=UI-R-C1-kc-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.20769.1 /TIER=ConsEnd /STK=0 /UG=Rn.20769 /UG_TITLE=ESTs AI044541 1384115_at BF555448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555448 /DB_XREF=gi:11665178 /DB_XREF=UI-R-E0-dg-c-07-0-UI.r1 /CLONE=UI-R-E0-dg-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.6596.2 /TIER=ConsEnd /STK=0 /UG=Rn.6596 /UG_TITLE=ESTs BF555448 Acyl-CoA thioesterase 2 Acot2 192272 NM_138907 0000038 // very long-chain fatty acid metabolic process // not recorded /// 0001666 // response to hypoxia // inferred from direct assay /// 0001676 // long-chain fatty acid metabolic process // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006637 // acyl-CoA metabolic process // inferred from direct assay /// 0006637 // acyl-CoA metabolic process // not recorded /// 0006637 // acyl-CoA metabolic process // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0033555 // multicellular organismal response to stress // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042760 // very long-chain fatty acid catabolic process // inferred from direct assay /// 0070849 // response to epidermal growth factor stimulus // inferred from expression pattern 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016290 // palmitoyl-CoA hydrolase activity // inferred from direct assay /// 0016290 // palmitoyl-CoA hydrolase activity // inferred from electronic annotation /// 0016291 // acyl-CoA thioesterase activity // inferred from direct assay /// 0016291 // acyl-CoA thioesterase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016790 // thiolester hydrolase activity // inferred from electronic annotation 1384116_at AA924216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924216 /DB_XREF=gi:4234356 /DB_XREF=UI-R-A1-dx-b-09-0-UI.s1 /CLONE=UI-R-A1-dx-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.15284.1 /TIER=ConsEnd /STK=0 /UG=Rn.15284 /UG_TITLE=ESTs AA924216 similar to vacuolar protein sorting 37D LOC687208 687208 NM_001128193 1384117_at BF555676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555676 /DB_XREF=gi:11665406 /DB_XREF=UI-R-A1-du-c-07-0-UI.r1 /CLONE=UI-R-A1-du-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.23632.1 /TIER=ConsEnd /STK=0 /UG=Rn.23632 /UG_TITLE=ESTs BF555676 similar to 9130011E15Rik protein RGD1564887 499363 XM_001058595 /// XM_574677 1384118_at AA956308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956308 /DB_XREF=gi:4238702 /DB_XREF=UI-R-E1-fh-h-05-0-UI.s1 /CLONE=UI-R-E1-fh-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.9611.1 /TIER=ConsEnd /STK=0 /UG=Rn.9611 /UG_TITLE=ESTs AA956308 zinc finger protein 329 Zfp329 308361 NM_001107477 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1384119_at AI072851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072851 /DB_XREF=gi:3399045 /DB_XREF=UI-R-Y0-lw-g-12-0-UI.s1 /CLONE=UI-R-Y0-lw-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.16554.1 /TIER=ConsEnd /STK=0 /UG=Rn.16554 /UG_TITLE=ESTs AI072851 mutL homolog 3 (E. coli) Mlh3 314320 NM_001108043 0006298 // mismatch repair // inferred from electronic annotation /// 0006298 // mismatch repair // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0007130 // synaptonemal complex assembly // not recorded /// 0007140 // male meiosis // not recorded /// 0007144 // female meiosis I // not recorded /// 0008104 // protein localization // not recorded 0000793 // condensed chromosome // not recorded /// 0000795 // synaptonemal complex // not recorded /// 0001673 // male germ cell nucleus // not recorded /// 0005712 // chiasma // not recorded 0003682 // chromatin binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0019237 // centromeric DNA binding // not recorded /// 0030983 // mismatched DNA binding // inferred from electronic annotation 1384120_at BF386877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386877 /DB_XREF=gi:11371701 /DB_XREF=UI-R-CA1-bbo-f-05-0-UI.s1 /CLONE=UI-R-CA1-bbo-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.12014.1 /TIER=ConsEnd /STK=0 /UG=Rn.12014 /UG_TITLE=ESTs BF386877 1384121_at AI058309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058309 /DB_XREF=gi:3332086 /DB_XREF=UI-R-C1-kl-f-11-0-UI.s1 /CLONE=UI-R-C1-kl-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.13769.1 /TIER=ConsEnd /STK=0 /UG=Rn.13769 /UG_TITLE=ESTs AI058309 1384122_at AA996697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996697 /DB_XREF=gi:4280463 /DB_XREF=UI-R-C0-hf-h-09-0-UI.s1 /CLONE=UI-R-C0-hf-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.12373.1 /TIER=ConsEnd /STK=0 /UG=Rn.12373 /UG_TITLE=ESTs AA996697 1384123_at BF559782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559782 /DB_XREF=gi:11669512 /DB_XREF=UI-R-A0-bn-c-05-0-UI.r1 /CLONE=UI-R-A0-bn-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.20725.2 /TIER=ConsEnd /STK=0 /UG=Rn.20725 /UG_TITLE=ESTs BF559782 hypothetical protein LOC100360384 LOC100360384 100360384 XM_002726507 /// XM_002729471 1384124_at AW534915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534915 /DB_XREF=gi:7177329 /DB_XREF=UI-R-BS0-anx-h-07-0-UI.s1 /CLONE=UI-R-BS0-anx-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.48398.1 /TIER=ConsEnd /STK=0 /UG=Rn.48398 /UG_TITLE=ESTs AW534915 1384125_at BF547275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547275 /DB_XREF=gi:11638382 /DB_XREF=UI-R-C2p-qn-c-06-0-UI.r1 /CLONE=UI-R-C2p-qn-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.64718.1 /TIER=ConsEnd /STK=0 /UG=Rn.64718 /UG_TITLE=ESTs, Weakly similar to T32633 hypothetical protein F15E6.1 - Caenorhabditis elegans (C.elegans) BF547275 myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila) Mll5 311968 XM_001059700 /// XM_231287 0002446 // neutrophil mediated immunity // inferred from electronic annotation /// 0006306 // DNA methylation // inferred from electronic annotation /// 0016571 // histone methylation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0042119 // neutrophil activation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0048384 // retinoic acid receptor signaling pathway // inferred from electronic annotation 0070688 // MLL5-L complex // inferred from electronic annotation 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0042800 // histone methyltransferase activity (H3-K4 specific) // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384126_a_at AW917217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917217 /DB_XREF=gi:8082962 /DB_XREF=EST348521 /CLONE=RGIEA80 /FEA=EST /CNT=3 /TID=Rn.37608.2 /TIER=ConsEnd /STK=0 /UG=Rn.37608 /UG_TITLE=ESTs AW917217 1384127_at AW917217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917217 /DB_XREF=gi:8082962 /DB_XREF=EST348521 /CLONE=RGIEA80 /FEA=EST /CNT=3 /TID=Rn.37608.2 /TIER=ConsEnd /STK=0 /UG=Rn.37608 /UG_TITLE=ESTs AW917217 1384128_at BF393261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393261 /DB_XREF=gi:11378121 /DB_XREF=UI-R-CA0-bfs-g-02-0-UI.s1 /CLONE=UI-R-CA0-bfs-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.61002.1 /TIER=ConsEnd /STK=0 /UG=Rn.61002 /UG_TITLE=ESTs BF393261 glycine-, glutamate-, thienylcyclohexylpiperidine-binding protein LOC246295 246295 NM_145082 /// XM_001076921 /// XM_575968 0005488 // binding // inferred from electronic annotation /// 0016594 // glycine binding // inferred from mutant phenotype /// 0016595 // glutamate binding // inferred from mutant phenotype /// 0016596 // thienylcyclohexylpiperidine binding // inferred from mutant phenotype 1384130_at AA875572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875572 /DB_XREF=gi:4231451 /DB_XREF=UI-R-E0-cm-c-04-0-UI.s1 /CLONE=UI-R-E0-cm-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.2962.1 /TIER=ConsEnd /STK=0 /UG=Rn.2962 /UG_TITLE=ESTs AA875572 similar to PRO0149 protein RGD1560171 367949 XM_001054786 /// XM_346366 1384131_at AW914046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW914046 /DB_XREF=gi:8079718 /DB_XREF=EST294824 /CLONE=RGIZB66 /FEA=EST /CNT=3 /TID=Rn.65305.1 /TIER=ConsEnd /STK=0 /UG=Rn.65305 /UG_TITLE=ESTs, Weakly similar to T17320 hypothetical protein DKFZp564J0863.1 (H.sapiens) AW914046 atlastin GTPase 2 Atl2 298757 NM_001100671 0006888 // ER to Golgi vesicle-mediated transport // not recorded /// 0007029 // endoplasmic reticulum organization // inferred from electronic annotation /// 0007029 // endoplasmic reticulum organization // not recorded /// 0007030 // Golgi organization // inferred from electronic annotation /// 0007030 // Golgi organization // not recorded /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1384132_at H31111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31111 /DB_XREF=gi:976533 /DB_XREF=EST104830 /CLONE=RPCAB71 /FEA=EST /CNT=3 /TID=Rn.21537.2 /TIER=ConsEnd /STK=0 /UG=Rn.21537 /UG_TITLE=ESTs, Weakly similar to GFHUC glycophorin C (H.sapiens) H31111 cell adhesion molecule 1 Cadm1 363058 NM_001012201 0001889 // liver development // inferred from mutant phenotype /// 0001913 // T cell mediated cytotoxicity // not recorded /// 0007155 // cell adhesion // not recorded /// 0007156 // homophilic cell adhesion // not recorded /// 0007156 // homophilic cell adhesion // inferred from sequence or structural similarity /// 0007157 // heterophilic cell-cell adhesion // not recorded /// 0007157 // heterophilic cell-cell adhesion // inferred from sequence or structural similarity /// 0007416 // synapse assembly // not recorded /// 0008037 // cell recognition // not recorded /// 0008037 // cell recognition // inferred from sequence or structural similarity /// 0016338 // calcium-independent cell-cell adhesion // not recorded /// 0042271 // susceptibility to natural killer cell mediated cytotoxicity // not recorded /// 0042271 // susceptibility to natural killer cell mediated cytotoxicity // inferred from sequence or structural similarity /// 0042271 // susceptibility to natural killer cell mediated cytotoxicity // inferred from electronic annotation /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // not recorded /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // inferred from sequence or structural similarity /// 0050715 // positive regulation of cytokine secretion // inferred from electronic annotation /// 0050715 // positive regulation of cytokine secretion // not recorded /// 0050798 // activated T cell proliferation // not recorded /// 0051606 // detection of stimulus // not recorded /// 0051606 // detection of stimulus // inferred from sequence or structural similarity /// 0051606 // detection of stimulus // inferred from electronic annotation 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // not recorded /// 0005911 // cell-cell junction // inferred from sequence or structural similarity /// 0008021 // synaptic vesicle // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from sequence or structural similarity /// 0019717 // synaptosome // inferred from direct assay /// 0030424 // axon // not recorded /// 0030425 // dendrite // not recorded /// 0045202 // synapse // not recorded 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0008022 // protein C-terminus binding // inferred from sequence or structural similarity /// 0030165 // PDZ domain binding // not recorded /// 0030165 // PDZ domain binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity 1384133_at BF522755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522755 /DB_XREF=gi:11630722 /DB_XREF=UI-R-Y0-uw-e-03-0-UI.r1 /CLONE=UI-R-Y0-uw-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.72403.1 /TIER=ConsEnd /STK=0 /UG=Rn.72403 /UG_TITLE=ESTs, Moderately similar to KF1B_RAT KINESIN-LIKE PROTEIN KIF1B (R.norvegicus) BF522755 kinesin family member 1A Kif1a 363288 XM_001070053 /// XM_001070204 /// XM_002727250 /// XM_343630 0007018 // microtubule-based movement // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1384134_at AI059390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059390 /DB_XREF=gi:3333167 /DB_XREF=UI-R-C1-le-d-01-0-UI.s1 /CLONE=UI-R-C1-le-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.19159.1 /TIER=ConsEnd /STK=0 /UG=Rn.19159 /UG_TITLE=ESTs AI059390 1384135_at AI575629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575629 /DB_XREF=gi:4560005 /DB_XREF=UI-R-Y0-vi-d-03-0-UI.s1 /CLONE=UI-R-Y0-vi-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.37897.1 /TIER=ConsEnd /STK=0 /UG=Rn.37897 /UG_TITLE=ESTs AI575629 1384136_at BI291045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291045 /DB_XREF=gi:14950221 /DB_XREF=UI-R-DK0-cge-g-06-0-UI.s1 /CLONE=UI-R-DK0-cge-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.41711.1 /TIER=ConsEnd /STK=0 /UG=Rn.41711 /UG_TITLE=ESTs BI291045 oxysterol binding protein-like 3 Osbpl3 362360 XM_001055606 /// XM_002726381 /// XM_002729308 /// XM_342683 0006869 // lipid transport // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation 0005515 // protein binding // not recorded 1384137_at AI030318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030318 /DB_XREF=gi:3248144 /DB_XREF=UI-R-C0-iu-a-01-0-UI.s1 /CLONE=UI-R-C0-iu-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.13522.1 /TIER=ConsEnd /STK=0 /UG=Rn.13522 /UG_TITLE=ESTs AI030318 1384138_at AI072291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072291 /DB_XREF=gi:3398485 /DB_XREF=UI-R-C2-ne-h-02-0-UI.s1 /CLONE=UI-R-C2-ne-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.20117.1 /TIER=ConsEnd /STK=0 /UG=Rn.20117 /UG_TITLE=ESTs AI072291 1384139_at AA956115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956115 /DB_XREF=gi:4238509 /DB_XREF=UI-R-E1-fi-f-03-0-UI.s1 /CLONE=UI-R-E1-fi-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.9559.1 /TIER=ConsEnd /STK=0 /UG=Rn.9559 /UG_TITLE=ESTs AA956115 gap junction membrane channel protein alpha 7 Gja7 266706 NM_001085381 0007154 // cell communication // inferred from electronic annotation /// 0007267 // cell-cell signaling // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0005921 // gap junction // inferred from direct assay /// 0005921 // gap junction // inferred from electronic annotation /// 0005922 // connexon complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005243 // gap junction channel activity // inferred from direct assay 1384140_at BF288836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288836 /DB_XREF=gi:11219906 /DB_XREF=EST453427 /CLONE=RGIGY50 /FEA=EST /CNT=3 /TID=Rn.43094.1 /TIER=ConsEnd /STK=0 /UG=Rn.43094 /UG_TITLE=ESTs BF288836 1384141_at BI289930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289930 /DB_XREF=gi:14948005 /DB_XREF=UI-R-DK0-cfp-h-07-0-UI.s1 /CLONE=UI-R-DK0-cfp-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.11713.2 /TIER=ConsEnd /STK=0 /UG=Rn.11713 /UG_TITLE=ESTs BI289930 zinc finger protein 84 Zfp84 308482 NM_001107500 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384143_at BE114778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114778 /DB_XREF=gi:8506883 /DB_XREF=UI-R-BJ1-awp-c-01-0-UI.s1 /CLONE=UI-R-BJ1-awp-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.52428.1 /TIER=ConsEnd /STK=0 /UG=Rn.52428 /UG_TITLE=ESTs BE114778 Cingulin Cgn 310655 XM_001059265 /// XM_227472 0016459 // myosin complex // inferred from electronic annotation /// 0043296 // apical junction complex // not recorded 0003774 // motor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384144_at AI058824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058824 /DB_XREF=gi:3332601 /DB_XREF=UI-R-C1-jy-c-04-0-UI.s2 /CLONE=UI-R-C1-jy-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.18995.1 /TIER=ConsEnd /STK=0 /UG=Rn.18995 /UG_TITLE=ESTs AI058824 Nucleoredoxin Nxn 360577 NM_001108285 0008152 // metabolic process // not recorded /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005634 // nucleus // not recorded 0004791 // thioredoxin-disulfide reductase activity // not recorded /// 0016209 // antioxidant activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1384145_at AI511200 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511200 /DB_XREF=gi:4416899 /DB_XREF=UI-R-C3-sg-b-12-0-UI.s1 /CLONE=UI-R-C3-sg-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.34648.1 /TIER=ConsEnd /STK=0 /UG=Rn.34648 /UG_TITLE=ESTs AI511200 1384146_at AI236895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236895 /DB_XREF=gi:3830401 /DB_XREF=EST233457 /CLONE=ROVDL91 /FEA=EST /CNT=3 /TID=Rn.25401.1 /TIER=ConsEnd /STK=0 /UG=Rn.25401 /UG_TITLE=ESTs AI236895 1384147_at AA955540 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955540 /DB_XREF=gi:4237935 /DB_XREF=UI-R-E1-fa-g-04-0-UI.s1 /CLONE=UI-R-E1-fa-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.8845.1 /TIER=ConsEnd /STK=0 /UG=Rn.8845 /UG_TITLE=ESTs AA955540 eukaryotic translation initiation factor 1A Eif1a 317163 NM_001008773 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation 1384148_at BI293985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293985 /DB_XREF=gi:14956007 /DB_XREF=UI-R-DK0-cdx-h-11-0-UI.s1 /CLONE=UI-R-DK0-cdx-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.48292.1 /TIER=ConsEnd /STK=0 /UG=Rn.48292 /UG_TITLE=ESTs BI293985 RAB20, member RAS oncogene family Rab20 689377 NM_001109535 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1384149_at H32531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H32531 /DB_XREF=gi:977948 /DB_XREF=EST107730 /FEA=EST /CNT=3 /TID=Rn.51825.1 /TIER=ConsEnd /STK=0 /UG=Rn.51825 /UG_TITLE=ESTs, Weakly similar to A45973 trichohyalin (H.sapiens) H32531 coiled-coil domain containing 75 Ccdc75 362685 NM_001108700 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation 1384150_at AA901038 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901038 /DB_XREF=gi:4233535 /DB_XREF=UI-R-A1-do-h-10-0-UI.s1 /CLONE=UI-R-A1-do-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.15169.1 /TIER=ConsEnd /STK=0 /UG=Rn.15169 /UG_TITLE=ESTs AA901038 Midline 1 Mid1 54252 NM_022927 0007026 // negative regulation of microtubule depolymerization // inferred from electronic annotation /// 0007026 // negative regulation of microtubule depolymerization // not recorded /// 0032874 // positive regulation of stress-activated MAPK cascade // inferred from electronic annotation /// 0032874 // positive regulation of stress-activated MAPK cascade // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // not recorded /// 0015630 // microtubule cytoskeleton // not recorded /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1384151_at AI578392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578392 /DB_XREF=gi:4562768 /DB_XREF=UI-R-AD0-wh-h-05-0-UI.s1 /CLONE=UI-R-AD0-wh-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.18788.1 /TIER=ConsEnd /STK=0 /UG=Rn.18788 /UG_TITLE=ESTs AI578392 1384152_at BE101118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101118 /DB_XREF=gi:8493026 /DB_XREF=UI-R-BJ1-auh-c-11-0-UI.s1 /CLONE=UI-R-BJ1-auh-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.68505.1 /TIER=ConsEnd /STK=0 /UG=Rn.68505 /UG_TITLE=ESTs BE101118 WD repeat domain 48 Wdr48 363164 NM_001135895 0016579 // protein deubiquitination // not recorded 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1384153_at BF415575 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415575 /DB_XREF=gi:11403564 /DB_XREF=UI-R-CA1-bka-h-04-0-UI.s1 /CLONE=UI-R-CA1-bka-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.62746.1 /TIER=ConsEnd /STK=0 /UG=Rn.62746 /UG_TITLE=ESTs, Highly similar to T00331 hypothetical protein KIAA0555 (H.sapiens) BF415575 Janus kinase and microtubule interacting protein 2 Jakmip2 307479 NM_001107391 1384154_at BF554739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554739 /DB_XREF=gi:11664469 /DB_XREF=UI-R-C2p-ol-c-08-0-UI.r1 /CLONE=UI-R-C2p-ol-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.19679.1 /TIER=ConsEnd /STK=0 /UG=Rn.19679 /UG_TITLE=ESTs, Highly similar to formin binding protein 21 (M.musculus) BF554739 WW domain binding protein 4 (formin binding protein 21) Wbp4 114765 NM_053766 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0045292 // nuclear mRNA cis splicing, via spliceosome // inferred from electronic annotation /// 0045292 // nuclear mRNA cis splicing, via spliceosome // not recorded /// 0045292 // nuclear mRNA cis splicing, via spliceosome // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded /// 0016607 // nuclear speck // inferred from sequence or structural similarity 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070064 // proline-rich region binding // inferred from electronic annotation /// 0070064 // proline-rich region binding // not recorded 1384156_at BI293851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293851 /DB_XREF=gi:14955742 /DB_XREF=UI-R-DK0-cdl-f-08-0-UI.s1 /CLONE=UI-R-DK0-cdl-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.35244.1 /TIER=ConsEnd /STK=0 /UG=Rn.35244 /UG_TITLE=ESTs BI293851 oxysterol binding protein-like 7 Osbpl7 303497 NM_001107044 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation 1384157_at AW916872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916872 /DB_XREF=gi:8082515 /DB_XREF=EST348085 /CLONE=RGIDU75 /FEA=EST /CNT=3 /TID=Rn.54011.1 /TIER=ConsEnd /STK=0 /UG=Rn.54011 /UG_TITLE=ESTs AW916872 ADP-ribosylation factor-like 8B Arl8b 500282 NM_001024332 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007059 // chromosome segregation // not recorded /// 0007067 // mitosis // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from electronic annotation /// 0030496 // midbody // not recorded /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0051233 // spindle midzone // inferred from electronic annotation /// 0051233 // spindle midzone // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0019003 // GDP binding // inferred from electronic annotation /// 0019003 // GDP binding // not recorded /// 0043014 // alpha-tubulin binding // inferred from electronic annotation /// 0043014 // alpha-tubulin binding // not recorded /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // not recorded 1384158_at AW522416 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522416 /DB_XREF=gi:7164801 /DB_XREF=UI-R-BO0-ahw-g-11-0-UI.s1 /CLONE=UI-R-BO0-ahw-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.20313.1 /TIER=ConsEnd /STK=0 /UG=Rn.20313 /UG_TITLE=ESTs AW522416 1384159_at AA956611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956611 /DB_XREF=gi:4239085 /DB_XREF=UI-R-E1-fn-c-02-0-UI.s1 /CLONE=UI-R-E1-fn-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.9039.1 /TIER=ConsEnd /STK=0 /UG=Rn.9039 /UG_TITLE=ESTs AA956611 1384160_at AI547837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547837 /DB_XREF=gi:4465325 /DB_XREF=UI-R-C3-sk-e-05-0-UI.s1 /CLONE=UI-R-C3-sk-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.76157.1 /TIER=ConsEnd /STK=0 /UG=Rn.76157 /UG_TITLE=ESTs AI547837 synaptopodin 2 Synpo2 499702 NM_001191963 /// XM_001074385 /// XM_575030 0005515 // protein binding // inferred from electronic annotation 1384161_at BF398627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398627 /DB_XREF=gi:11383622 /DB_XREF=UI-R-BS2-ber-a-06-0-UI.s1 /CLONE=UI-R-BS2-ber-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.48976.1 /TIER=ConsEnd /STK=0 /UG=Rn.48976 /UG_TITLE=ESTs BF398627 Casein kinase 1, epsilon Csnk1e 58822 NM_031617 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0042752 // regulation of circadian rhythm // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1384162_at BI285660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285660 /DB_XREF=gi:14939529 /DB_XREF=UI-R-CT0s-cas-a-04-0-UI.s1 /CLONE=UI-R-CT0s-cas-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.48410.1 /TIER=ConsEnd /STK=0 /UG=Rn.48410 /UG_TITLE=ESTs BI285660 cysteine-serine-rich nuclear protein 2 Csrnp2 315308 NM_001108113 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // not recorded 1384163_at BE103875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103875 /DB_XREF=gi:8495975 /DB_XREF=UI-R-BX0-arh-h-04-0-UI.s1 /CLONE=UI-R-BX0-arh-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.45040.1 /TIER=ConsEnd /STK=0 /UG=Rn.45040 /UG_TITLE=ESTs BE103875 1384164_at BF290416 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290416 /DB_XREF=gi:11221486 /DB_XREF=EST455007 /CLONE=RGIHV60 /FEA=EST /CNT=3 /TID=Rn.6639.1 /TIER=ConsEnd /STK=0 /UG=Rn.6639 /UG_TITLE=ESTs BF290416 1384165_at BG671473 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671473 /DB_XREF=gi:13893572 /DB_XREF=DRNBSD01 /CLONE=DRNBSD01 /FEA=EST /CNT=3 /TID=Rn.18973.1 /TIER=ConsEnd /STK=0 /UG=Rn.18973 /UG_TITLE=ESTs BG671473 1384166_a_at AW522260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522260 /DB_XREF=gi:7164645 /DB_XREF=UI-R-BO0-agy-d-11-0-UI.s1 /CLONE=UI-R-BO0-agy-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.19944.2 /TIER=ConsEnd /STK=0 /UG=Rn.19944 /UG_TITLE=ESTs AW522260 1384167_at AW522260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522260 /DB_XREF=gi:7164645 /DB_XREF=UI-R-BO0-agy-d-11-0-UI.s1 /CLONE=UI-R-BO0-agy-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.19944.2 /TIER=ConsEnd /STK=0 /UG=Rn.19944 /UG_TITLE=ESTs AW522260 similar to F43G9.2 LOC681647 681647 XM_001057182 0016998 // cell wall macromolecule catabolic process // inferred from electronic annotation 1384168_at AI234896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234896 /DB_XREF=gi:3828402 /DB_XREF=EST231458 /CLONE=ROVCJ26 /FEA=EST /CNT=3 /TID=Rn.25287.1 /TIER=ConsEnd /STK=0 /UG=Rn.25287 /UG_TITLE=ESTs AI234896 1384169_a_at AA900477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900477 /DB_XREF=gi:4232969 /DB_XREF=UI-R-E0-bw-d-01-0-UI.s2 /CLONE=UI-R-E0-bw-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.54611.1 /TIER=ConsEnd /STK=0 /UG=Rn.54611 /UG_TITLE=ESTs AA900477 vav 2 guanine nucleotide exchange factor Vav2 296603 NM_001106563 0006915 // apoptosis // not recorded /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0016477 // cell migration // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030031 // cell projection assembly // not recorded /// 0030032 // lamellipodium assembly // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0043552 // positive regulation of phosphoinositide 3-kinase activity // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005154 // epidermal growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1384170_at AA900477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900477 /DB_XREF=gi:4232969 /DB_XREF=UI-R-E0-bw-d-01-0-UI.s2 /CLONE=UI-R-E0-bw-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.54611.1 /TIER=ConsEnd /STK=0 /UG=Rn.54611 /UG_TITLE=ESTs AA900477 vav 2 guanine nucleotide exchange factor Vav2 296603 NM_001106563 0006915 // apoptosis // not recorded /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0016477 // cell migration // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030031 // cell projection assembly // not recorded /// 0030032 // lamellipodium assembly // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0043552 // positive regulation of phosphoinositide 3-kinase activity // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005154 // epidermal growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1384171_x_at AA900477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900477 /DB_XREF=gi:4232969 /DB_XREF=UI-R-E0-bw-d-01-0-UI.s2 /CLONE=UI-R-E0-bw-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.54611.1 /TIER=ConsEnd /STK=0 /UG=Rn.54611 /UG_TITLE=ESTs AA900477 vav 2 guanine nucleotide exchange factor Vav2 296603 NM_001106563 0006915 // apoptosis // not recorded /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0016477 // cell migration // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030031 // cell projection assembly // not recorded /// 0030032 // lamellipodium assembly // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0043552 // positive regulation of phosphoinositide 3-kinase activity // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005154 // epidermal growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1384172_at BF398262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398262 /DB_XREF=gi:11383251 /DB_XREF=UI-R-BS2-bfb-d-12-0-UI.s1 /CLONE=UI-R-BS2-bfb-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.50335.1 /TIER=ConsEnd /STK=0 /UG=Rn.50335 /UG_TITLE=ESTs BF398262 family with sequence similarity 179, member B Fam179b 314169 XM_002726743 /// XM_234236 0005488 // binding // inferred from electronic annotation 1384173_at BI290909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290909 /DB_XREF=gi:14949940 /DB_XREF=UI-R-DK0-cgb-a-02-0-UI.s1 /CLONE=UI-R-DK0-cgb-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.35285.1 /TIER=ConsEnd /STK=0 /UG=Rn.35285 /UG_TITLE=ESTs BI290909 src kinase associated phosphoprotein 1 Skap1 286975 NM_173311 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0050852 // T cell receptor signaling pathway // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003823 // antigen binding // inferred from electronic annotation /// 0003823 // antigen binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction /// 0042169 // SH2 domain binding // inferred from physical interaction /// 0042169 // SH2 domain binding // not recorded /// 0042169 // SH2 domain binding // inferred from electronic annotation 1384174_at AI028874 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI028874 /DB_XREF=gi:4294655 /DB_XREF=UI-R-C0-ik-c-09-0-UI.s1 /CLONE=UI-R-C0-ik-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.18088.1 /TIER=ConsEnd /STK=0 /UG=Rn.18088 /UG_TITLE=ESTs AI028874 1384175_at AI030569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030569 /DB_XREF=gi:3248395 /DB_XREF=UI-R-C0-iu-c-12-0-UI.s1 /CLONE=UI-R-C0-iu-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.18531.1 /TIER=ConsEnd /STK=0 /UG=Rn.18531 /UG_TITLE=ESTs AI030569 ephrin A4 Efna4 310643 NM_001107692 0016020 // membrane // inferred from electronic annotation 1384176_at BF419876 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419876 /DB_XREF=gi:11407865 /DB_XREF=UI-R-BJ2-bph-c-06-0-UI.s1 /CLONE=UI-R-BJ2-bph-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.23503.1 /TIER=ConsEnd /STK=0 /UG=Rn.23503 /UG_TITLE=ESTs BF419876 1384177_at BI281497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281497 /DB_XREF=gi:14931282 /DB_XREF=UI-R-DD0-bzu-g-03-0-UI.s1 /CLONE=UI-R-DD0-bzu-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.53932.1 /TIER=ConsEnd /STK=0 /UG=Rn.53932 /UG_TITLE=ESTs BI281497 GRAM domain containing 3 Gramd3 307288 NM_001014011 1384178_at BF546934 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546934 /DB_XREF=gi:11638035 /DB_XREF=UI-R-C1-kh-e-08-0-UI.r1 /CLONE=UI-R-C1-kh-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.20863.2 /TIER=ConsEnd /STK=0 /UG=Rn.20863 /UG_TITLE=ESTs BF546934 leucine rich repeat containing 4B Lrrc4b 308571 XM_001077685 /// XM_218615 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1384179_at BI294722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294722 /DB_XREF=gi:14957454 /DB_XREF=UI-R-DK0-ceb-c-11-0-UI.s1 /CLONE=UI-R-DK0-ceb-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.79618.1 /TIER=ConsEnd /STK=0 /UG=Rn.79618 /UG_TITLE=ESTs, Weakly similar to TC17 RAT TRANSCRIPTION FACTOR 17 (R.norvegicus) BI294722 1384180_at BE118697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118697 /DB_XREF=gi:8510802 /DB_XREF=UI-R-BS1-azr-f-11-0-UI.s1 /CLONE=UI-R-BS1-azr-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.48113.1 /TIER=ConsEnd /STK=0 /UG=Rn.48113 /UG_TITLE=ESTs BE118697 interferon-induced protein with tetratricopeptide repeats 2 Ifit2 294091 NM_001024753 0035457 // cellular response to interferon-alpha // not recorded 0005488 // binding // inferred from electronic annotation 1384181_at AI547486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547486 /DB_XREF=gi:4464974 /DB_XREF=UI-R-C3-sl-e-05-0-UI.s1 /CLONE=UI-R-C3-sl-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.24044.1 /TIER=ConsEnd /STK=0 /UG=Rn.24044 /UG_TITLE=ESTs AI547486 1384182_at BE128738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE128738 /DB_XREF=gi:8551491 /DB_XREF=DEPA2488 /FEA=EST /CNT=3 /TID=Rn.23230.2 /TIER=ConsEnd /STK=0 /UG=Rn.23230 /UG_TITLE=ESTs, Highly similar to S69890 mitogen inducible gene mig-2 (H.sapiens) BE128738 fermitin family homolog 2 (Drosophila) Fermt2 289992 NM_001011915 0001725 // stress fiber // inferred from electronic annotation /// 0001725 // stress fiber // not recorded /// 0005829 // cytosol // not recorded /// 0031941 // filamentous actin // inferred from electronic annotation /// 0031941 // filamentous actin // not recorded 0005488 // binding // inferred from electronic annotation 1384183_at AA996869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996869 /DB_XREF=gi:4280633 /DB_XREF=UI-R-C0-hh-b-01-0-UI.s1 /CLONE=UI-R-C0-hh-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.24096.1 /TIER=ConsEnd /STK=0 /UG=Rn.24096 /UG_TITLE=ESTs AA996869 1384184_at BE117485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117485 /DB_XREF=gi:8509590 /DB_XREF=UI-R-BS1-ayo-d-05-0-UI.s1 /CLONE=UI-R-BS1-ayo-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.24703.1 /TIER=ConsEnd /STK=0 /UG=Rn.24703 /UG_TITLE=ESTs BE117485 1384185_at BI289594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289594 /DB_XREF=gi:14947328 /DB_XREF=UI-R-DK0-cff-h-02-0-UI.s1 /CLONE=UI-R-DK0-cff-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.66167.1 /TIER=ConsEnd /STK=0 /UG=Rn.66167 /UG_TITLE=ESTs BI289594 similar to RIKEN cDNA 2410016O06 RGD1307704 314300 NM_001108040 0008152 // metabolic process // not recorded /// 0034720 // histone H3-K4 demethylation // not recorded /// 0045668 // negative regulation of osteoblast differentiation // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0070544 // histone H3-K36 demethylation // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0005506 // iron ion binding // not recorded /// 0005515 // protein binding // not recorded /// 0016706 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors // not recorded /// 0032453 // histone demethylase activity (H3-K4 specific) // not recorded /// 0051864 // histone demethylase activity (H3-K36 specific) // not recorded 1384186_at AI556447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556447 /DB_XREF=gi:4488810 /DB_XREF=UI-R-C2p-rh-f-11-0-UI.s1 /CLONE=UI-R-C2p-rh-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.17577.1 /TIER=ConsEnd /STK=0 /UG=Rn.17577 /UG_TITLE=ESTs AI556447 ER degradation enhancer, mannosidase alpha-like 1 Edem1 297504 XM_001075943 /// XM_238366 0030433 // ER-associated protein catabolic process // not recorded 0016020 // membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded 0004559 // alpha-mannosidase activity // not recorded /// 0004571 // mannosyl-oligosaccharide 1,2-alpha-mannosidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051787 // misfolded protein binding // not recorded 1384187_at BF551686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551686 /DB_XREF=gi:11661416 /DB_XREF=UI-R-C1-kk-e-12-0-UI.r1 /CLONE=UI-R-C1-kk-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.17309.2 /TIER=ConsEnd /STK=0 /UG=Rn.17309 /UG_TITLE=ESTs BF551686 adaptor-related protein complex 1, sigma 2 subunit Ap1s2 302671 NM_001127531 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005829 // cytosol // not recorded /// 0030117 // membrane coat // inferred from electronic annotation /// 0030130 // clathrin coat of trans-Golgi network vesicle // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 1384188_at AW142766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142766 /DB_XREF=gi:6162665 /DB_XREF=EST293019 /CLONE=RGIAV09 /FEA=EST /CNT=3 /TID=Rn.53474.2 /TIER=ConsEnd /STK=0 /UG=Rn.53474 /UG_TITLE=ESTs AW142766 1384189_at AI045368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045368 /DB_XREF=gi:3292187 /DB_XREF=UI-R-C1-ka-d-06-0-UI.s1 /CLONE=UI-R-C1-ka-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.16191.1 /TIER=ConsEnd /STK=0 /UG=Rn.16191 /UG_TITLE=ESTs AI045368 1384190_at BF553848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF553848 /DB_XREF=gi:11663578 /DB_XREF=UI-R-BT0-pr-g-04-0-UI.r1 /CLONE=UI-R-BT0-pr-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.64437.1 /TIER=ConsEnd /STK=0 /UG=Rn.64437 /UG_TITLE=ESTs BF553848 1384191_at BF387765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387765 /DB_XREF=gi:11372630 /DB_XREF=UI-R-CA1-bbv-a-01-0-UI.s1 /CLONE=UI-R-CA1-bbv-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.14817.1 /TIER=ConsEnd /STK=0 /UG=Rn.14817 /UG_TITLE=ESTs BF387765 1384192_at AA819913 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819913 /DB_XREF=gi:4228162 /DB_XREF=UI-R-A0-at-e-03-0-UI.s1 /CLONE=UI-R-A0-at-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.16695.1 /TIER=ConsEnd /STK=0 /UG=Rn.16695 /UG_TITLE=ESTs AA819913 carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 Chst1 295934 NM_001011955 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006012 // galactose metabolic process // inferred from electronic annotation /// 0006012 // galactose metabolic process // not recorded /// 0006790 // sulfur compound metabolic process // not recorded /// 0006790 // sulfur compound metabolic process // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0042339 // keratan sulfate metabolic process // inferred from electronic annotation /// 0042339 // keratan sulfate metabolic process // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008146 // sulfotransferase activity // not recorded /// 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0045130 // keratan sulfotransferase activity // inferred from electronic annotation /// 0045130 // keratan sulfotransferase activity // not recorded 1384193_at AI235607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235607 /DB_XREF=gi:3829113 /DB_XREF=EST232169 /CLONE=ROVCU10 /FEA=EST /CNT=3 /TID=Rn.19609.1 /TIER=ConsEnd /STK=0 /UG=Rn.19609 /UG_TITLE=ESTs AI235607 1384194_at BF411054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411054 /DB_XREF=gi:11399029 /DB_XREF=UI-R-CN0-bmg-b-09-0-UI.s1 /CLONE=UI-R-CN0-bmg-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.20683.1 /TIER=ConsEnd /STK=0 /UG=Rn.20683 /UG_TITLE=ESTs BF411054 Frizzled homolog 7 (Drosophila) Fzd7 301440 XM_002727202 /// XM_237191 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0010812 // negative regulation of cell-substrate adhesion // not recorded /// 0014834 // satellite cell maintenance involved in skeletal muscle regeneration // not recorded /// 0033077 // T cell differentiation in thymus // not recorded /// 0034446 // substrate adhesion-dependent cell spreading // not recorded /// 0035567 // non-canonical Wnt receptor signaling pathway // not recorded /// 0048103 // somatic stem cell division // not recorded /// 0060054 // positive regulation of epithelial cell proliferation involved in wound healing // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0005886 // plasma membrane // not recorded 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0017147 // Wnt-protein binding // not recorded /// 0042813 // Wnt receptor activity // not recorded 1384195_at BM388427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388427 /DB_XREF=gi:18188480 /DB_XREF=UI-R-CN1-cjn-o-09-0-UI.s1 /CLONE=UI-R-CN1-cjn-o-09-0-UI /FEA=EST /CNT=3 /TID=Rn.7765.1 /TIER=ConsEnd /STK=0 /UG=Rn.7765 /UG_TITLE=ESTs BM388427 transmembrane protein 45A Tmem45a 680866 NM_001191074 /// XM_001059246 1384196_at BI288795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288795 /DB_XREF=gi:14945718 /DB_XREF=UI-R-DK0-cdf-a-05-0-UI.s1 /CLONE=UI-R-DK0-cdf-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.12835.1 /TIER=ConsEnd /STK=0 /UG=Rn.12835 /UG_TITLE=ESTs BI288795 WD repeat domain 41 Wdr41 361879 NM_001108541 1384197_at AW521536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521536 /DB_XREF=gi:7163921 /DB_XREF=UI-R-BO0-agn-g-04-0-UI.s1 /CLONE=UI-R-BO0-agn-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.30216.1 /TIER=ConsEnd /STK=0 /UG=Rn.30216 /UG_TITLE=ESTs AW521536 Discs, large (Drosophila) homolog-associated protein 1 Dlgap1 65040 NM_022946 0007267 // cell-cell signaling // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from direct assay 1384198_at BF288648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288648 /DB_XREF=gi:11219822 /DB_XREF=EST453343 /CLONE=RGIGX03 /FEA=EST /CNT=3 /TID=Rn.20175.1 /TIER=ConsEnd /STK=0 /UG=Rn.20175 /UG_TITLE=ESTs BF288648 Ecto-NOX disulfide-thiol exchanger 2 Enox2 302817 XM_001060535 /// XM_002727669 /// XM_002730292 /// XM_229131 0007624 // ultradian rhythm // not recorded /// 0055114 // oxidation reduction // not recorded 0009897 // external side of plasma membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // not recorded 1384199_at BF395951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395951 /DB_XREF=gi:11380922 /DB_XREF=UI-R-BS2-bdt-d-11-0-UI.s1 /CLONE=UI-R-BS2-bdt-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.20231.1 /TIER=ConsEnd /STK=0 /UG=Rn.20231 /UG_TITLE=ESTs BF395951 1384200_at BE107328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107328 /DB_XREF=gi:8499433 /DB_XREF=UI-R-BS1-ays-e-03-0-UI.s1 /CLONE=UI-R-BS1-ays-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.43605.1 /TIER=ConsEnd /STK=0 /UG=Rn.43605 /UG_TITLE=ESTs, Moderately similar to T12523 hypothetical protein DKFZp434K063.1 (H.sapiens) BE107328 1384201_at H33235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33235 /DB_XREF=gi:978652 /DB_XREF=EST109041 /CLONE=RPNAK28 /FEA=EST /CNT=3 /TID=Rn.22779.1 /TIER=ConsEnd /STK=0 /UG=Rn.22779 /UG_TITLE=ESTs H33235 1384202_at BI287326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287326 /DB_XREF=gi:14942834 /DB_XREF=UI-R-CS0s-cbn-e-08-0-UI.s1 /CLONE=UI-R-CS0s-cbn-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.14758.1 /TIER=ConsEnd /STK=0 /UG=Rn.14758 /UG_TITLE=ESTs, Weakly similar to calcium binding protein P22 (Rattus norvegicus) (R.norvegicus) BI287326 tescalcin Tesc 288689 XM_001076953 /// XM_213790 0008285 // negative regulation of cell proliferation // not recorded /// 0008584 // male gonad development // not recorded /// 0010628 // positive regulation of gene expression // not recorded /// 0030219 // megakaryocyte differentiation // not recorded /// 0033628 // regulation of cell adhesion mediated by integrin // not recorded /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0045654 // positive regulation of megakaryocyte differentiation // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0001726 // ruffle // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0030027 // lamellipodium // not recorded 0000287 // magnesium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // not recorded /// 0019212 // phosphatase inhibitor activity // not recorded 1384203_at AA818664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818664 /DB_XREF=gi:4200475 /DB_XREF=UI-R-A0-az-h-02-0-UI.s1 /CLONE=UI-R-A0-az-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.16520.1 /TIER=ConsEnd /STK=0 /UG=Rn.16520 /UG_TITLE=ESTs AA818664 1384204_at BG379466 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379466 /DB_XREF=gi:13303938 /DB_XREF=UI-R-CS0-bth-c-04-0-UI.s1 /CLONE=UI-R-CS0-bth-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.14767.1 /TIER=ConsEnd /STK=0 /UG=Rn.14767 /UG_TITLE=ESTs BG379466 1384205_at BM385969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385969 /DB_XREF=gi:18186022 /DB_XREF=UI-R-DN1-ckg-i-12-0-UI.s1 /CLONE=UI-R-DN1-ckg-i-12-0-UI /FEA=EST /CNT=3 /TID=Rn.17601.1 /TIER=ConsEnd /STK=0 /UG=Rn.17601 /UG_TITLE=ESTs BM385969 N-glycanase 1 Ngly1 361014 NM_001014136 0006516 // glycoprotein catabolic process // not recorded /// 0006516 // glycoprotein catabolic process // inferred from sequence or structural similarity /// 0006516 // glycoprotein catabolic process // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0000224 // peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384206_at BM389592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389592 /DB_XREF=gi:18189645 /DB_XREF=UI-R-CN1-cjn-p-14-0-UI.s1 /CLONE=UI-R-CN1-cjn-p-14-0-UI /FEA=EST /CNT=3 /TID=Rn.17686.1 /TIER=ConsEnd /STK=0 /UG=Rn.17686 /UG_TITLE=ESTs, Weakly similar to T24363 hypothetical protein T02E1.5 - Caenorhabditis elegans (C.elegans) BM389592 short chain dehydrogenase/reductase family 16C, member 5 Sdr16c5 297805 NM_001106634 0008152 // metabolic process // inferred from electronic annotation /// 0042572 // retinol metabolic process // not recorded /// 0042574 // retinal metabolic process // not recorded /// 0043616 // keratinocyte proliferation // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0000299 // integral to membrane of membrane fraction // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004745 // retinol dehydrogenase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1384207_at AI028960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI028960 /DB_XREF=gi:4295252 /DB_XREF=UI-R-C0-io-f-08-0-UI.s1 /CLONE=UI-R-C0-io-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.18112.1 /TIER=ConsEnd /STK=0 /UG=Rn.18112 /UG_TITLE=ESTs, Weakly similar to A36A_DROME ANON-35F36A PROTEIN (D.melanogaster) AI028960 NIF3 NGG1 interacting factor 3-like 1 (S. pombe) Nif3l1 301431 NM_001024763 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded 1384208_at BM385222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385222 /DB_XREF=gi:18185275 /DB_XREF=UI-R-CN1-cjs-p-02-0-UI.s2 /CLONE=UI-R-CN1-cjs-p-02-0-UI /FEA=EST /CNT=3 /TID=Rn.23440.1 /TIER=ConsEnd /STK=0 /UG=Rn.23440 /UG_TITLE=ESTs, Highly similar to IGJ MOUSE IMMUNOGLOBULIN J CHAIN PRECURSOR (M.musculus) BM385222 immunoglobulin joining chain Igj 360922 1384209_at BI295835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295835 /DB_XREF=gi:14959680 /DB_XREF=UI-R-DK0-cfb-c-01-0-UI.s1 /CLONE=UI-R-DK0-cfb-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.25137.1 /TIER=ConsEnd /STK=0 /UG=Rn.25137 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) BI295835 1384210_at BI288809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288809 /DB_XREF=gi:14945749 /DB_XREF=UI-R-DK0-cdf-b-08-0-UI.s1 /CLONE=UI-R-DK0-cdf-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.30134.1 /TIER=ConsEnd /STK=0 /UG=Rn.30134 /UG_TITLE=ESTs, Weakly similar to T34532 hypothetical protein DKFZp434B1517.1 (H.sapiens) BI288809 MICAL C-terminal like Micalcl 293180 NM_182669 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0051019 // mitogen-activated protein kinase binding // not recorded /// 0051019 // mitogen-activated protein kinase binding // inferred from sequence or structural similarity /// 0051019 // mitogen-activated protein kinase binding // inferred from electronic annotation 1384211_at BM388456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388456 /DB_XREF=gi:18188509 /DB_XREF=UI-R-DZ0-ckm-e-09-0-UI.s1 /CLONE=UI-R-DZ0-ckm-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.40442.1 /TIER=ConsEnd /STK=0 /UG=Rn.40442 /UG_TITLE=ESTs BM388456 collagen, type XI, alpha 1 Col11a1 25654 XM_001072431 /// XM_001072520 /// XM_001076840 /// XM_002726064 /// XM_002726065 /// XM_002729104 /// XM_002729105 /// XM_342325 0001502 // cartilage condensation // inferred from electronic annotation /// 0001502 // cartilage condensation // not recorded /// 0001503 // ossification // inferred from expression pattern /// 0002063 // chondrocyte development // inferred from electronic annotation /// 0002063 // chondrocyte development // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0006029 // proteoglycan metabolic process // inferred from electronic annotation /// 0006029 // proteoglycan metabolic process // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0030199 // collagen fibril organization // not recorded /// 0030199 // collagen fibril organization // traceable author statement /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048705 // skeletal system morphogenesis // not recorded /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // not recorded /// 0051216 // cartilage development // not recorded /// 0051216 // cartilage development // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen // inferred from electronic annotation /// 0005581 // collagen // not recorded /// 0005592 // collagen type XI // not recorded /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // traceable author statement 1384212_at BG671766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671766 /DB_XREF=gi:13893865 /DB_XREF=DRNBXF04 /CLONE=DRNBXF04 /FEA=EST /CNT=3 /TID=Rn.76548.1 /TIER=ConsEnd /STK=0 /UG=Rn.76548 /UG_TITLE=ESTs, Weakly similar to S47659 CDC2CDC13 suppressor (H.sapiens) BG671766 RNA binding motif, single stranded interacting protein 3 Rbms3 680726 XM_001061329 /// XM_002727143 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1384213_at AA955944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955944 /DB_XREF=gi:4238339 /DB_XREF=UI-R-E1-ff-b-05-0-UI.s1 /CLONE=UI-R-E1-ff-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.9507.1 /TIER=ConsEnd /STK=0 /UG=Rn.9507 /UG_TITLE=ESTs AA955944 programmed cell death 6 interacting protein Pdcd6ip 501083 NM_001029910 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from direct assay /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // not recorded /// 0048306 // calcium-dependent protein binding // not recorded 1384214_a_at AI045459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045459 /DB_XREF=gi:3292278 /DB_XREF=UI-R-C1-jz-e-12-0-UI.s2 /CLONE=UI-R-C1-jz-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.16225.1 /TIER=ConsEnd /STK=0 /UG=Rn.16225 /UG_TITLE=ESTs AI045459 1384215_at AI144991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144991 /DB_XREF=gi:3666790 /DB_XREF=UI-R-BT0-po-g-09-0-UI.s1 /CLONE=UI-R-BT0-po-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.23821.1 /TIER=ConsEnd /STK=0 /UG=Rn.23821 /UG_TITLE=ESTs AI144991 1384216_at AW534148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534148 /DB_XREF=gi:7176562 /DB_XREF=UI-R-C4-alp-g-06-0-UI.s1 /CLONE=UI-R-C4-alp-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.25404.1 /TIER=ConsEnd /STK=0 /UG=Rn.25404 /UG_TITLE=ESTs AW534148 1384217_at BI276341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276341 /DB_XREF=gi:14921137 /DB_XREF=UI-R-CW0-bwp-a-07-0-UI.s1 /CLONE=UI-R-CW0-bwp-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.43204.1 /TIER=ConsEnd /STK=0 /UG=Rn.43204 /UG_TITLE=ESTs BI276341 Zinc fingers and homeoboxes 2 Zhx2 314988 XM_001067896 /// XM_235318 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006402 // mRNA catabolic process // inferred from electronic annotation /// 0006402 // mRNA catabolic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1384218_at AW534335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534335 /DB_XREF=gi:7176749 /DB_XREF=UI-R-C4-alo-b-11-0-UI.s1 /CLONE=UI-R-C4-alo-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.65568.1 /TIER=ConsEnd /STK=0 /UG=Rn.65568 /UG_TITLE=ESTs, Highly similar to GCC RAT IG GAMMA-2C CHAIN C REGION (R.norvegicus) AW534335 immunoglobulin G heavy chain LOC362795 362795 0003823 // antigen binding // inferred from electronic annotation 1384219_at BF522747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522747 /DB_XREF=gi:11630714 /DB_XREF=UI-R-Y0-uw-c-05-0-UI.r1 /CLONE=UI-R-Y0-uw-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.32015.1 /TIER=ConsEnd /STK=0 /UG=Rn.32015 /UG_TITLE=ESTs BF522747 1384220_at BE120941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120941 /DB_XREF=gi:8513046 /DB_XREF=UI-R-CA0-baf-c-06-0-UI.s1 /CLONE=UI-R-CA0-baf-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.18774.1 /TIER=ConsEnd /STK=0 /UG=Rn.18774 /UG_TITLE=ESTs, Moderately similar to tubulin-specific chaperone c (H.sapiens) BE120941 tubulin folding cofactor C Tbcc 316221 NM_001108200 0005488 // binding // inferred from electronic annotation 1384221_at BF409196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409196 /DB_XREF=gi:11397171 /DB_XREF=UI-R-BT1-bkn-b-08-0-UI.s1 /CLONE=UI-R-BT1-bkn-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.20495.1 /TIER=ConsEnd /STK=0 /UG=Rn.20495 /UG_TITLE=ESTs BF409196 zinc finger protein 469 Zfp469 304302 NM_001107123 0003677 // DNA binding // inferred from electronic annotation 1384222_at BG669046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669046 /DB_XREF=gi:13890968 /DB_XREF=DRN04H03 /CLONE=DRN04H03 /FEA=EST /CNT=3 /TID=Rn.23371.1 /TIER=ConsEnd /STK=0 /UG=Rn.23371 /UG_TITLE=ESTs BG669046 1384223_at AA819618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819618 /DB_XREF=gi:4227955 /DB_XREF=UI-R-A0-an-c-10-0-UI.s1 /CLONE=UI-R-A0-an-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.24193.1 /TIER=ConsEnd /STK=0 /UG=Rn.24193 /UG_TITLE=ESTs AA819618 1384224_at BE120549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120549 /DB_XREF=gi:8512654 /DB_XREF=UI-R-CA0-bat-g-05-0-UI.s1 /CLONE=UI-R-CA0-bat-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.53597.1 /TIER=ConsEnd /STK=0 /UG=Rn.53597 /UG_TITLE=ESTs BE120549 1384225_at BI289963 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289963 /DB_XREF=gi:14948081 /DB_XREF=UI-R-DK0-cfq-c-06-0-UI.s1 /CLONE=UI-R-DK0-cfq-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.54031.1 /TIER=ConsEnd /STK=0 /UG=Rn.54031 /UG_TITLE=ESTs BI289963 1384226_at AI602005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602005 /DB_XREF=gi:4611166 /DB_XREF=UI-R-Y0-uv-f-11-0-UI.s2 /CLONE=UI-R-Y0-uv-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.16010.1 /TIER=ConsEnd /STK=0 /UG=Rn.16010 /UG_TITLE=ESTs AI602005 1384227_at AI044031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044031 /DB_XREF=gi:3290766 /DB_XREF=UI-R-C1-js-a-03-0-UI.s1 /CLONE=UI-R-C1-js-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.18783.1 /TIER=ConsEnd /STK=0 /UG=Rn.18783 /UG_TITLE=ESTs, Weakly similar to JC1285 protein-tyrosine-phosphatase (R.norvegicus) AI044031 protein tyrosine phosphatase, receptor type, K, extracellular region Ptprk 360302 NM_001029902 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from direct assay /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from mutant phenotype 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // traceable author statement /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1384228_at AI501087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501087 /DB_XREF=gi:4398938 /DB_XREF=UI-R-C2p-rw-c-11-0-UI.s1 /CLONE=UI-R-C2p-rw-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.20061.1 /TIER=ConsEnd /STK=0 /UG=Rn.20061 /UG_TITLE=ESTs AI501087 1384229_at AI576080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576080 /DB_XREF=gi:4560456 /DB_XREF=UI-R-G0-uo-h-07-0-UI.s1 /CLONE=UI-R-G0-uo-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.12663.1 /TIER=ConsEnd /STK=0 /UG=Rn.12663 /UG_TITLE=ESTs AI576080 Guanine nucleotide binding protein, alpha stimulating, olfactory type Gnal 24611 NM_001191836 /// XM_001060701 /// XM_001060758 /// XM_002728555 /// XM_341626 0001975 // response to amphetamine // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // traceable author statement /// 0007190 // activation of adenylate cyclase activity // not recorded /// 0007191 // activation of adenylate cyclase activity by dopamine receptor signaling pathway // not recorded /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007608 // sensory perception of smell // not recorded /// 0031000 // response to caffeine // not recorded 0005834 // heterotrimeric G-protein complex // traceable author statement /// 0005886 // plasma membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0004016 // adenylate cyclase activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0050827 // toxin receptor binding // inferred from physical interaction 1384230_at AI576177 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576177 /DB_XREF=gi:4560553 /DB_XREF=UI-R-Y0-ux-a-01-0-UI.s1 /CLONE=UI-R-Y0-ux-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.26714.1 /TIER=ConsEnd /STK=0 /UG=Rn.26714 /UG_TITLE=ESTs AI576177 similar to keratinocytes associated protein 3 LOC683980 683980 NM_001109674 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1384231_at BE108276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108276 /DB_XREF=gi:8500381 /DB_XREF=UI-R-BS1-ayx-d-07-0-UI.s1 /CLONE=UI-R-BS1-ayx-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.34970.1 /TIER=ConsEnd /STK=0 /UG=Rn.34970 /UG_TITLE=ESTs BE108276 similar to Shc SH2-domain binding protein 1 LOC687121 687121 XM_001077162 1384232_at AI709768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709768 /DB_XREF=gi:4999544 /DB_XREF=UI-R-C3-tj-d-02-0-UI.s1 /CLONE=UI-R-C3-tj-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.12808.1 /TIER=ConsEnd /STK=0 /UG=Rn.12808 /UG_TITLE=ESTs AI709768 1384233_at BE107090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107090 /DB_XREF=gi:8499195 /DB_XREF=UI-R-BS1-ayp-g-02-0-UI.s1 /CLONE=UI-R-BS1-ayp-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.15616.1 /TIER=ConsEnd /STK=0 /UG=Rn.15616 /UG_TITLE=ESTs BE107090 1384234_at BE126475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE126475 /DB_XREF=gi:8549157 /DB_XREF=DEPA0223 /FEA=EST /CNT=3 /TID=Rn.45994.1 /TIER=ConsEnd /STK=0 /UG=Rn.45994 /UG_TITLE=ESTs, Highly similar to PMX1 MOUSE PAIRED MESODERM HOMEOBOX PROTEIN 1 (R.norvegicus) BE126475 paired related homeobox 1 Prrx1 266813 NM_153821 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0042474 // middle ear morphogenesis // inferred from electronic annotation /// 0042474 // middle ear morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045880 // positive regulation of smoothened signaling pathway // inferred from electronic annotation /// 0045880 // positive regulation of smoothened signaling pathway // not recorded /// 0048701 // embryonic cranial skeleton morphogenesis // inferred from electronic annotation /// 0048701 // embryonic cranial skeleton morphogenesis // not recorded /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048844 // artery morphogenesis // inferred from electronic annotation /// 0048844 // artery morphogenesis // not recorded /// 0051216 // cartilage development // inferred from electronic annotation /// 0051216 // cartilage development // not recorded /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1384235_at BM386899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386899 /DB_XREF=gi:18186952 /DB_XREF=UI-R-CN1-cjh-h-20-0-UI.s1 /CLONE=UI-R-CN1-cjh-h-20-0-UI /FEA=EST /CNT=3 /TID=Rn.21716.1 /TIER=ConsEnd /STK=0 /UG=Rn.21716 /UG_TITLE=ESTs BM386899 1384236_at BI281089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281089 /DB_XREF=gi:14930481 /DB_XREF=UI-R-DD0-bzr-b-01-0-UI.s1 /CLONE=UI-R-DD0-bzr-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.61784.1 /TIER=ConsEnd /STK=0 /UG=Rn.61784 /UG_TITLE=ESTs BI281089 androgen down regulated in mouse prostate LOC100362555 100362555 XM_002725981 /// XM_002729045 1384237_at BF420822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420822 /DB_XREF=gi:11408811 /DB_XREF=UI-R-BJ2-bqa-f-02-0-UI.s1 /CLONE=UI-R-BJ2-bqa-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.111.1 /TIER=ConsEnd /STK=0 /UG=Rn.111 /UG_TITLE=ESTs BF420822 peroxisomal biogenesis factor 10 Pex10 680424 NM_001109405 0007031 // peroxisome organization // inferred from electronic annotation /// 0007031 // peroxisome organization // not recorded /// 0016558 // protein import into peroxisome matrix // not recorded 0005777 // peroxisome // not recorded /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0005779 // integral to peroxisomal membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384238_at BM385249 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385249 /DB_XREF=gi:18185302 /DB_XREF=UI-R-EB1-clf-n-03-0-UI.s1 /CLONE=UI-R-EB1-clf-n-03-0-UI /FEA=EST /CNT=3 /TID=Rn.16666.1 /TIER=ConsEnd /STK=0 /UG=Rn.16666 /UG_TITLE=ESTs BM385249 1384239_at AA818474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818474 /DB_XREF=gi:4228270 /DB_XREF=UI-R-A0-at-c-06-0-UI.s1 /CLONE=UI-R-A0-at-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.16712.1 /TIER=ConsEnd /STK=0 /UG=Rn.16712 /UG_TITLE=ESTs AA818474 TBC1 domain family, member 8 Tbc1d8 680133 NM_001191067 /// XM_001055799 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1384240_at BI290306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290306 /DB_XREF=gi:14948756 /DB_XREF=UI-R-DK0-cfu-f-11-0-UI.s1 /CLONE=UI-R-DK0-cfu-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.18696.1 /TIER=ConsEnd /STK=0 /UG=Rn.18696 /UG_TITLE=ESTs BI290306 angiotensin II receptor, type 1a Agtr1a 24180 NM_030985 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0001921 // positive regulation of receptor recycling // inferred from direct assay /// 0001991 // regulation of systemic arterial blood pressure by circulatory renin-angiotensin // inferred from electronic annotation /// 0001991 // regulation of systemic arterial blood pressure by circulatory renin-angiotensin // not recorded /// 0002001 // renin secretion into blood stream // inferred from electronic annotation /// 0002001 // renin secretion into blood stream // not recorded /// 0002018 // renin-angiotensin regulation of aldosterone production // inferred from electronic annotation /// 0002018 // renin-angiotensin regulation of aldosterone production // not recorded /// 0002019 // regulation of renal output by angiotensin // inferred from electronic annotation /// 0002019 // regulation of renal output by angiotensin // not recorded /// 0002035 // brain renin-angiotensin system // inferred from electronic annotation /// 0002035 // brain renin-angiotensin system // not recorded /// 0006885 // regulation of pH // inferred from direct assay /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007266 // Rho protein signal transduction // not recorded /// 0008217 // regulation of blood pressure // traceable author statement /// 0010873 // positive regulation of cholesterol esterification // not recorded /// 0019229 // regulation of vasoconstriction // not recorded /// 0019722 // calcium-mediated signaling // not recorded /// 0032270 // positive regulation of cellular protein metabolic process // not recorded /// 0032430 // positive regulation of phospholipase A2 activity // not recorded /// 0042756 // drinking behavior // inferred from electronic annotation /// 0042756 // drinking behavior // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045777 // positive regulation of blood pressure // inferred from electronic annotation /// 0045777 // positive regulation of blood pressure // not recorded /// 0050715 // positive regulation of cytokine secretion // not recorded /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // not recorded /// 0060326 // cell chemotaxis // not recorded /// 0071549 // cellular response to dexamethasone stimulus // inferred from direct assay /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from direct assay /// 0012506 // vesicle membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from mutant phenotype /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0031968 // organelle outer membrane // inferred from direct assay /// 0031983 // vesicle lumen // inferred from direct assay 0001596 // angiotensin type I receptor activity // inferred from direct assay /// 0001596 // angiotensin type I receptor activity // inferred from mutant phenotype /// 0001596 // angiotensin type I receptor activity // not recorded /// 0001596 // angiotensin type I receptor activity // inferred from electronic annotation /// 0001965 // G-protein alpha-subunit binding // inferred from mutant phenotype /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004945 // angiotensin type II receptor activity // inferred from electronic annotation /// 0004945 // angiotensin type II receptor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0010698 // acetyltransferase activator activity // not recorded /// 0017046 // peptide hormone binding // inferred from mutant phenotype /// 0031711 // bradykinin receptor binding // not recorded /// 0043621 // protein self-association // inferred from mutant phenotype /// 0046982 // protein heterodimerization activity // not recorded 1384241_at BE096332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096332 /DB_XREF=gi:8487263 /DB_XREF=UI-R-BU0-ape-g-09-0-UI.s1 /CLONE=UI-R-BU0-ape-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.23610.1 /TIER=ConsEnd /STK=0 /UG=Rn.23610 /UG_TITLE=ESTs, Weakly similar to GAMMA CRYSTALLIN D (R.norvegicus) BE096332 crystallin, gamma N Crygn 296730 NM_001106573 1384242_at BI303239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303239 /DB_XREF=gi:14979519 /DB_XREF=UI-R-DQ0-ciz-d-13-0-UI.s1 /CLONE=UI-R-DQ0-ciz-d-13-0-UI /FEA=EST /CNT=3 /TID=Rn.8841.2 /TIER=ConsEnd /STK=0 /UG=Rn.8841 /UG_TITLE=ESTs BI303239 1384243_at AI111413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111413 /DB_XREF=gi:3511455 /DB_XREF=UI-R-Y0-mk-g-05-0-UI.s1 /CLONE=UI-R-Y0-mk-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.11581.1 /TIER=ConsEnd /STK=0 /UG=Rn.11581 /UG_TITLE=ESTs AI111413 splA/ryanodine receptor domain and SOCS box containing 4 Spsb4 300950 NM_001106849 0023034 // intracellular signaling pathway // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384244_at AA964752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964752 /DB_XREF=gi:4279626 /DB_XREF=UI-R-C0-gx-h-04-0-UI.s1 /CLONE=UI-R-C0-gx-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.11903.1 /TIER=ConsEnd /STK=0 /UG=Rn.11903 /UG_TITLE=ESTs AA964752 hydroxysteroid dehydrogenase like 2 Hsdl2 313200 NM_001025697 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0032934 // sterol binding // inferred from electronic annotation 1384245_at AA997442 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997442 /DB_XREF=gi:4283601 /DB_XREF=UI-R-C0-hr-h-07-0-UI.s1 /CLONE=UI-R-C0-hr-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.12701.1 /TIER=ConsEnd /STK=0 /UG=Rn.12701 /UG_TITLE=ESTs AA997442 1384246_at AA996404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996404 /DB_XREF=gi:4280171 /DB_XREF=UI-R-C0-he-e-09-0-UI.s1 /CLONE=UI-R-C0-he-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.12984.1 /TIER=ConsEnd /STK=0 /UG=Rn.12984 /UG_TITLE=ESTs AA996404 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 Smarca5 307766 NM_001107419 0000183 // chromatin silencing at rDNA // not recorded /// 0006302 // double-strand break repair // not recorded /// 0006333 // chromatin assembly or disassembly // not recorded /// 0006334 // nucleosome assembly // not recorded /// 0006338 // chromatin remodeling // not recorded /// 0006338 // chromatin remodeling // inferred from electronic annotation /// 0006352 // transcription initiation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0009790 // embryo development // not recorded /// 0016584 // nucleosome positioning // not recorded /// 0043044 // ATP-dependent chromatin remodeling // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // not recorded /// 0045941 // positive regulation of transcription // not recorded 0000793 // condensed chromosome // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005677 // chromatin silencing complex // not recorded /// 0005730 // nucleolus // not recorded /// 0016585 // chromatin remodeling complex // inferred from electronic annotation /// 0031213 // RSF complex // not recorded /// 0043596 // nuclear replication fork // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0031491 // nucleosome binding // inferred from electronic annotation /// 0042393 // histone binding // not recorded 1384247_at AI070365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070365 /DB_XREF=gi:3396616 /DB_XREF=UI-R-Y0-lt-a-09-0-UI.s1 /CLONE=UI-R-Y0-lt-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.19734.1 /TIER=ConsEnd /STK=0 /UG=Rn.19734 /UG_TITLE=ESTs AI070365 1384248_at AI072686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072686 /DB_XREF=gi:3398880 /DB_XREF=UI-R-C2-nk-f-07-0-UI.s1 /CLONE=UI-R-C2-nk-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.20228.1 /TIER=ConsEnd /STK=0 /UG=Rn.20228 /UG_TITLE=ESTs AI072686 1384249_at AI111958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111958 /DB_XREF=gi:3511907 /DB_XREF=UI-R-Y0-mo-b-09-0-UI.s1 /CLONE=UI-R-Y0-mo-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.23570.1 /TIER=ConsEnd /STK=0 /UG=Rn.23570 /UG_TITLE=ESTs AI111958 1384250_a_at AA818098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818098 /DB_XREF=gi:4198614 /DB_XREF=UI-R-A0-am-e-09-0-UI.s1 /CLONE=UI-R-A0-am-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.23945.1 /TIER=ConsEnd /STK=0 /UG=Rn.23945 /UG_TITLE=ESTs AA818098 1384251_at AI137873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137873 /DB_XREF=gi:3638650 /DB_XREF=UI-R-C0-hg-g-12-0-UI.s1 /CLONE=UI-R-C0-hg-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.33049.1 /TIER=ConsEnd /STK=0 /UG=Rn.33049 /UG_TITLE=ESTs AI137873 leucine rich repeat containing 27 Lrrc27 499281 NM_001113789 /// NM_001143756 0005515 // protein binding // inferred from electronic annotation 1384252_at AI603103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI603103 /DB_XREF=gi:4612270 /DB_XREF=UI-R-AE0-xg-a-06-0-UI.s1 /CLONE=UI-R-AE0-xg-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.40282.1 /TIER=ConsEnd /STK=0 /UG=Rn.40282 /UG_TITLE=ESTs AI603103 similar to hypothetical protein BC015148 RGD1309095 301381 NM_001106909 0016787 // hydrolase activity // inferred from electronic annotation 1384253_at AW251334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251334 /DB_XREF=gi:6594925 /DB_XREF=UI-R-BJ0-adg-h-12-0-UI.s1 /CLONE=UI-R-BJ0-adg-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.41084.1 /TIER=ConsEnd /STK=0 /UG=Rn.41084 /UG_TITLE=ESTs, Weakly similar to ANXA_MOUSE Annexin A10 (M.musculus) AW251334 palladin, cytoskeletal associated protein Palld 364558 NM_001014237 0031175 // neuron projection development // inferred from mutant phenotype /// 0031529 // ruffle organization // inferred from mutant phenotype /// 0032956 // regulation of actin cytoskeleton organization // inferred from mutant phenotype /// 0042060 // wound healing // inferred from expression pattern /// 0060707 // trophoblast giant cell differentiation // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from expression pattern 0001725 // stress fiber // inferred from direct assay /// 0001726 // ruffle // inferred from direct assay /// 0002102 // podosome // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005884 // actin filament // not recorded /// 0030175 // filopodium // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0044295 // axonal growth cone // inferred from direct assay 0005515 // protein binding // not recorded 1384254_at AI717553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717553 /DB_XREF=gi:5034809 /DB_XREF=UI-R-Y0-acp-f-06-0-UI.s1 /CLONE=UI-R-Y0-acp-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.41363.1 /TIER=ConsEnd /STK=0 /UG=Rn.41363 /UG_TITLE=ESTs AI717553 OTU domain containing 1 Otud1 498803 XM_001074167 /// XM_574086 1384255_at AA956372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956372 /DB_XREF=gi:4238846 /DB_XREF=UI-R-E1-fg-c-08-0-UI.s2 /CLONE=UI-R-E1-fg-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.9627.1 /TIER=ConsEnd /STK=0 /UG=Rn.9627 /UG_TITLE=ESTs AA956372 N-ethylmaleimide-sensitive factor attachment protein, gamma Napg 307382 NM_001107384 0006886 // intracellular protein transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384256_at BI293599 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293599 /DB_XREF=gi:14955246 /DB_XREF=UI-R-DK0-cds-d-10-0-UI.s1 /CLONE=UI-R-DK0-cds-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.16309.2 /TIER=ConsEnd /STK=0 /UG=Rn.16309 /UG_TITLE=ESTs, Moderately similar to T08692 hypothetical protein DKFZp564K112.1 (H.sapiens) BI293599 La ribonucleoprotein domain family, member 7 Larp7 686883 NM_001044290 0006396 // RNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1384257_at BF555394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555394 /DB_XREF=gi:11665124 /DB_XREF=UI-R-A1-ei-g-12-0-UI.r1 /CLONE=UI-R-A1-ei-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.64020.1 /TIER=ConsEnd /STK=0 /UG=Rn.64020 /UG_TITLE=ESTs, Highly similar to A54691 octamer-binding protein NonO - mouse (M.musculus) BF555394 non-POU domain containing, octamer-binding Nono 317259 NM_001012356 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded /// 0042382 // paraspeckles // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1384258_at AW920266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920266 /DB_XREF=gi:8086075 /DB_XREF=EST351570 /CLONE=RGIGT21 /FEA=EST /CNT=3 /TID=Rn.55566.1 /TIER=ConsEnd /STK=0 /UG=Rn.55566 /UG_TITLE=ESTs AW920266 1384259_at BF559151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559151 /DB_XREF=gi:11668881 /DB_XREF=UI-R-C1-ky-h-08-0-UI.r1 /CLONE=UI-R-C1-ky-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.14942.1 /TIER=ConsEnd /STK=0 /UG=Rn.14942 /UG_TITLE=ESTs BF559151 Rac GTPase-activating protein 1 Racgap1 315298 NM_001108112 0000910 // cytokinesis // inferred from electronic annotation /// 0000910 // cytokinesis // not recorded /// 0000915 // cytokinesis, actomyosin contractile ring assembly // inferred from electronic annotation /// 0000915 // cytokinesis, actomyosin contractile ring assembly // not recorded /// 0007108 // cytokinesis, initiation of separation // inferred from electronic annotation /// 0007108 // cytokinesis, initiation of separation // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007405 // neuroblast proliferation // inferred from electronic annotation /// 0007405 // neuroblast proliferation // not recorded /// 0008272 // sulfate transport // inferred from electronic annotation /// 0008272 // sulfate transport // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0030496 // midbody // inferred from electronic annotation /// 0030496 // midbody // not recorded 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0043014 // alpha-tubulin binding // inferred from electronic annotation /// 0043014 // alpha-tubulin binding // not recorded /// 0043015 // gamma-tubulin binding // inferred from electronic annotation /// 0043015 // gamma-tubulin binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // not recorded 1384260_at BE095699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095699 /DB_XREF=gi:8486630 /DB_XREF=UI-R-BU0-aoy-c-03-0-UI.s1 /CLONE=UI-R-BU0-aoy-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.20452.1 /TIER=ConsEnd /STK=0 /UG=Rn.20452 /UG_TITLE=ESTs BE095699 1384261_at AI072173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072173 /DB_XREF=gi:3398367 /DB_XREF=UI-R-C2-mz-h-11-0-UI.s1 /CLONE=UI-R-C2-mz-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.25121.1 /TIER=ConsEnd /STK=0 /UG=Rn.25121 /UG_TITLE=ESTs AI072173 1384262_at BI274037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274037 /DB_XREF=gi:14884578 /DB_XREF=UI-R-CW0-bwb-h-10-0-UI.s1 /CLONE=UI-R-CW0-bwb-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.51144.1 /TIER=ConsEnd /STK=0 /UG=Rn.51144 /UG_TITLE=ESTs BI274037 protein phosphatase 1, regulatory (inhibitor) subunit 3B Ppp1r3b 192280 NM_138912 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005979 // regulation of glycogen biosynthetic process // inferred from direct assay /// 0005981 // regulation of glycogen catabolic process // inferred from direct assay 0000164 // protein phosphatase type 1 complex // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0042587 // glycogen granule // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0019888 // protein phosphatase regulator activity // inferred from direct assay /// 0019899 // enzyme binding // inferred from direct assay /// 0019899 // enzyme binding // inferred from mutant phenotype /// 0019899 // enzyme binding // inferred from physical interaction 1384263_at AI072473 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072473 /DB_XREF=gi:3398667 /DB_XREF=UI-R-C2-nm-b-03-0-UI.s1 /CLONE=UI-R-C2-nm-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.20164.1 /TIER=ConsEnd /STK=0 /UG=Rn.20164 /UG_TITLE=ESTs AI072473 transmembrane protein 161B Tmem161b 309953 XM_001057417 /// XM_226652 1384264_at AI578120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578120 /DB_XREF=gi:4562496 /DB_XREF=UI-R-Y0-uw-a-03-0-UI.s2 /CLONE=UI-R-Y0-uw-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.38288.1 /TIER=ConsEnd /STK=0 /UG=Rn.38288 /UG_TITLE=ESTs AI578120 myosin, heavy chain 14 Myh14 308572 NM_001100690 0006200 // ATP catabolic process // not recorded /// 0008152 // metabolic process // not recorded /// 0030048 // actin filament-based movement // not recorded /// 0030048 // actin filament-based movement // inferred from electronic annotation 0001725 // stress fiber // not recorded /// 0001725 // stress fiber // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016459 // myosin complex // inferred from electronic annotation /// 0016459 // myosin complex // not recorded /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0030426 // growth cone // not recorded /// 0030426 // growth cone // inferred from electronic annotation 0000146 // microfilament motor activity // not recorded /// 0000146 // microfilament motor activity // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0030898 // actin-dependent ATPase activity // not recorded /// 0030898 // actin-dependent ATPase activity // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded /// 0051015 // actin filament binding // inferred from electronic annotation 1384265_at BI278347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278347 /DB_XREF=gi:14925099 /DB_XREF=UI-R-CW0-bwd-d-12-0-UI.s1 /CLONE=UI-R-CW0-bwd-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.45023.1 /TIER=ConsEnd /STK=0 /UG=Rn.45023 /UG_TITLE=ESTs, Moderately similar to Y039_HUMAN HYPOTHETICAL PROTEIN KIAA0039 (H.sapiens) BI278347 polymerase (DNA-directed), delta 3, accessory subunit Pold3 293144 NM_001024750 0006261 // DNA-dependent DNA replication // inferred from mutant phenotype /// 0006297 // nucleotide-excision repair, DNA gap filling // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0043625 // delta DNA polymerase complex // inferred by curator 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384266_at AA817729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817729 /DB_XREF=gi:4198258 /DB_XREF=UI-R-A0-aa-g-01-0-UI.s1 /CLONE=UI-R-A0-aa-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.16810.1 /TIER=ConsEnd /STK=0 /UG=Rn.16810 /UG_TITLE=ESTs AA817729 1384267_at BF547003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547003 /DB_XREF=gi:11638110 /DB_XREF=UI-R-C1-kj-f-06-0-UI.r1 /CLONE=UI-R-C1-kj-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.20898.2 /TIER=ConsEnd /STK=0 /UG=Rn.20898 /UG_TITLE=ESTs BF547003 1384268_at AW435305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435305 /DB_XREF=gi:6966612 /DB_XREF=UI-R-BJ0p-afc-a-03-0-UI.s1 /CLONE=UI-R-BJ0p-afc-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.11723.2 /TIER=ConsEnd /STK=0 /UG=Rn.11723 /UG_TITLE=ESTs AW435305 cyclin Y-like 1 Ccnyl1 316452 XM_001072068 /// XM_237211 1384269_at BF386887 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386887 /DB_XREF=gi:11371706 /DB_XREF=UI-R-CA1-bbo-f-10-0-UI.s1 /CLONE=UI-R-CA1-bbo-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.7074.1 /TIER=ConsEnd /STK=0 /UG=Rn.7074 /UG_TITLE=ESTs BF386887 1384270_at BG375371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375371 /DB_XREF=gi:13299843 /DB_XREF=UI-R-CV1-bsz-f-03-0-UI.s1 /CLONE=UI-R-CV1-bsz-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.52971.1 /TIER=ConsEnd /STK=0 /UG=Rn.52971 /UG_TITLE=ESTs BG375371 1384271_at BI291798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291798 /DB_XREF=gi:14951692 /DB_XREF=UI-R-DN0-cit-f-10-0-UI.s1 /CLONE=UI-R-DN0-cit-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.54180.1 /TIER=ConsEnd /STK=0 /UG=Rn.54180 /UG_TITLE=ESTs, Weakly similar to S26689 hypothetical protein hc1 - mouse (M.musculus) BI291798 1384272_at BG378837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378837 /DB_XREF=gi:13303309 /DB_XREF=UI-R-CV1-bvt-d-12-0-UI.s1 /CLONE=UI-R-CV1-bvt-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.24356.1 /TIER=ConsEnd /STK=0 /UG=Rn.24356 /UG_TITLE=ESTs BG378837 1384273_at BF419310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419310 /DB_XREF=gi:11407299 /DB_XREF=UI-R-BJ2-bqq-b-04-0-UI.s1 /CLONE=UI-R-BJ2-bqq-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.19663.1 /TIER=ConsEnd /STK=0 /UG=Rn.19663 /UG_TITLE=ESTs BF419310 sedoheptulokinase Shpk 287479 NM_001033682 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0016301 // kinase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1384274_at BG377595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377595 /DB_XREF=gi:13302067 /DB_XREF=UI-R-CU0-buz-f-09-0-UI.s1 /CLONE=UI-R-CU0-buz-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.20197.1 /TIER=ConsEnd /STK=0 /UG=Rn.20197 /UG_TITLE=ESTs, Moderately similar to SPIN MOUSE SPINDLIN (M.musculus) BG377595 similar to Spindlin-like protein 2 (SPIN-2) LOC367746 367746 XM_001055494 /// XM_001065575 0007276 // gamete generation // inferred from electronic annotation 1384275_at BI300393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300393 /DB_XREF=gi:14976673 /DB_XREF=UI-R-CV2-cie-d-12-0-UI.s1 /CLONE=UI-R-CV2-cie-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.35426.1 /TIER=ConsEnd /STK=0 /UG=Rn.35426 /UG_TITLE=ESTs BI300393 hypothetical protein LOC688328 LOC688328 688328 XR_085566 1384276_at BI283340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283340 /DB_XREF=gi:14934988 /DB_XREF=UI-R-DD0-bzz-a-02-0-UI.s1 /CLONE=UI-R-DD0-bzz-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.39299.1 /TIER=ConsEnd /STK=0 /UG=Rn.39299 /UG_TITLE=ESTs BI283340 1384277_at BM388018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388018 /DB_XREF=gi:18188071 /DB_XREF=UI-R-CN1-cjl-g-05-0-UI.s1 /CLONE=UI-R-CN1-cjl-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.79306.1 /TIER=ConsEnd /STK=0 /UG=Rn.79306 /UG_TITLE=ESTs BM388018 pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 Plekhh1 314262 NM_001108036 0005856 // cytoskeleton // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1384278_x_at BG377047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377047 /DB_XREF=gi:13301519 /DB_XREF=UI-R-CS0-bvm-g-06-0-UI.s1 /CLONE=UI-R-CS0-bvm-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.18453.1 /TIER=ConsEnd /STK=0 /UG=Rn.18453 /UG_TITLE=ESTs BG377047 coiled-coil domain containing 34 Ccdc34 362187 NM_001108587 1384279_at BI275378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275378 /DB_XREF=gi:14887175 /DB_XREF=UI-R-CX0-bwu-g-05-0-UI.s1 /CLONE=UI-R-CX0-bwu-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.20997.1 /TIER=ConsEnd /STK=0 /UG=Rn.20997 /UG_TITLE=ESTs BI275378 family with sequence similarity 117, member B Fam117b 363236 NM_001108797 1384280_at AA964152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964152 /DB_XREF=gi:4279028 /DB_XREF=UI-R-E1-gl-g-03-0-UI.s1 /CLONE=UI-R-E1-gl-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.76232.2 /TIER=ConsEnd /STK=0 /UG=Rn.76232 /UG_TITLE=ESTs AA964152 nucleolar and spindle associated protein 1 Nusap1 311336 NM_001107762 0000070 // mitotic sister chromatid segregation // not recorded /// 0000070 // mitotic sister chromatid segregation // inferred from electronic annotation /// 0000281 // cytokinesis after mitosis // not recorded /// 0000281 // cytokinesis after mitosis // inferred from electronic annotation /// 0007076 // mitotic chromosome condensation // not recorded /// 0007076 // mitotic chromosome condensation // inferred from electronic annotation /// 0040001 // establishment of mitotic spindle localization // not recorded /// 0040001 // establishment of mitotic spindle localization // inferred from electronic annotation /// 0045840 // positive regulation of mitosis // not recorded /// 0045840 // positive regulation of mitosis // inferred from electronic annotation 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded /// 0005876 // spindle microtubule // inferred from electronic annotation 0008017 // microtubule binding // not recorded /// 0008017 // microtubule binding // inferred from electronic annotation 1384281_at BI295209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295209 /DB_XREF=gi:14958425 /DB_XREF=UI-R-DK0-cet-b-03-0-UI.s1 /CLONE=UI-R-DK0-cet-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.13852.2 /TIER=ConsEnd /STK=0 /UG=Rn.13852 /UG_TITLE=ESTs BI295209 1384282_at BG379149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379149 /DB_XREF=gi:13303621 /DB_XREF=UI-R-BT1-bnk-d-03-0-UI.s1 /CLONE=UI-R-BT1-bnk-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.18600.1 /TIER=ConsEnd /STK=0 /UG=Rn.18600 /UG_TITLE=ESTs BG379149 zinc finger and SCAN domain containing 21 Zscan21 304342 NM_001012021 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1384283_at BI288318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288318 /DB_XREF=gi:14944787 /DB_XREF=UI-R-DK0-ccz-e-06-0-UI.s1 /CLONE=UI-R-DK0-ccz-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.22749.1 /TIER=ConsEnd /STK=0 /UG=Rn.22749 /UG_TITLE=ESTs, Weakly similar to T12477 hypothetical protein DKFZp564L0862.1 (H.sapiens) BI288318 ankyrin repeat and SOCS box-containing 9 /// ankyrin repeat and SOCS box-containing 9-like Asb9 /// LOC100364446 100364446 /// 367785 NM_001191913 /// XM_002727553 /// XM_346301 0023034 // intracellular signaling pathway // inferred from electronic annotation 1384284_at BI290838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290838 /DB_XREF=gi:14949794 /DB_XREF=UI-R-DK0-cgi-a-10-0-UI.s1 /CLONE=UI-R-DK0-cgi-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.33277.1 /TIER=ConsEnd /STK=0 /UG=Rn.33277 /UG_TITLE=ESTs BI290838 1384285_at BI298096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298096 /DB_XREF=gi:14974376 /DB_XREF=UI-R-CV2-chf-c-12-0-UI.s1 /CLONE=UI-R-CV2-chf-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.46936.1 /TIER=ConsEnd /STK=0 /UG=Rn.46936 /UG_TITLE=ESTs BI298096 membrane-associated ring finger (C3HC4) 3 March3 364878 NM_001007759 0006897 // endocytosis // inferred from electronic annotation 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384286_at BI285501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285501 /DB_XREF=gi:14939207 /DB_XREF=UI-R-DD0-caa-h-04-0-UI.s1 /CLONE=UI-R-DD0-caa-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.49589.1 /TIER=ConsEnd /STK=0 /UG=Rn.49589 /UG_TITLE=ESTs BI285501 1384287_at BI278552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278552 /DB_XREF=gi:14925510 /DB_XREF=UI-R-CW0-bxn-b-03-0-UI.s1 /CLONE=UI-R-CW0-bxn-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.53898.1 /TIER=ConsEnd /STK=0 /UG=Rn.53898 /UG_TITLE=ESTs BI278552 1384288_at BI292470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292470 /DB_XREF=gi:14952997 /DB_XREF=UI-R-DN0-civ-p-20-0-UI.s1 /CLONE=UI-R-DN0-civ-p-20-0-UI /FEA=EST /CNT=3 /TID=Rn.7211.1 /TIER=ConsEnd /STK=0 /UG=Rn.7211 /UG_TITLE=ESTs BI292470 1384289_at BI281651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281651 /DB_XREF=gi:14931596 /DB_XREF=UI-R-CT0s-cau-h-05-0-UI.s1 /CLONE=UI-R-CT0s-cau-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.78737.1 /TIER=ConsEnd /STK=0 /UG=Rn.78737 /UG_TITLE=ESTs BI281651 RELT-like 2 Rell2 361313 NM_001014149 0010811 // positive regulation of cell-substrate adhesion // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // not recorded 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0005518 // collagen binding // inferred from electronic annotation /// 0005518 // collagen binding // not recorded 1384290_at BG373809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373809 /DB_XREF=gi:13270346 /DB_XREF=UI-R-CV1-bsk-b-09-0-UI.s1 /CLONE=UI-R-CV1-bsk-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.8718.1 /TIER=ConsEnd /STK=0 /UG=Rn.8718 /UG_TITLE=ESTs BG373809 retinoblastoma binding protein 6 Rbbp6 308968 XM_001073098 /// XM_001076339 /// XM_001076360 /// XM_219296 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1384291_at AI144851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144851 /DB_XREF=gi:3666650 /DB_XREF=UI-R-BT0-pm-f-03-0-UI.s1 /CLONE=UI-R-BT0-pm-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.25219.2 /TIER=ConsEnd /STK=0 /UG=Rn.25219 /UG_TITLE=ESTs AI144851 1384292_at BI291018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291018 /DB_XREF=gi:14950165 /DB_XREF=UI-R-DK0-cge-d-09-0-UI.s1 /CLONE=UI-R-DK0-cge-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.48639.1 /TIER=ConsEnd /STK=0 /UG=Rn.48639 /UG_TITLE=ESTs BI291018 docking protein 1 Dok1 312477 NM_001025416 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0007265 // Ras protein signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005066 // transmembrane receptor protein tyrosine kinase signaling protein activity // inferred from electronic annotation /// 0005066 // transmembrane receptor protein tyrosine kinase signaling protein activity // not recorded /// 0005158 // insulin receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384293_at BE100543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100543 /DB_XREF=gi:8492437 /DB_XREF=UI-R-BJ1-aue-f-07-0-UI.s1 /CLONE=UI-R-BJ1-aue-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.49975.1 /TIER=ConsEnd /STK=0 /UG=Rn.49975 /UG_TITLE=ESTs, Highly similar to S60254 nuclear receptor co-repressor N-CoR - mouse (M.musculus) BE100543 nuclear receptor co-repressor 1 Ncor1 54299 XM_001077495 /// XM_577103 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0002361 // CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation // inferred from electronic annotation /// 0002361 // CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0014067 // negative regulation of phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014067 // negative regulation of phosphoinositide 3-kinase cascade // not recorded /// 0016481 // negative regulation of transcription // inferred from mutant phenotype /// 0016481 // negative regulation of transcription // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0021549 // cerebellum development // inferred from expression pattern /// 0021794 // thalamus development // inferred from electronic annotation /// 0021794 // thalamus development // not recorded /// 0031065 // positive regulation of histone deacetylation // inferred from electronic annotation /// 0031065 // positive regulation of histone deacetylation // not recorded /// 0032922 // circadian regulation of gene expression // inferred from electronic annotation /// 0032922 // circadian regulation of gene expression // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0051225 // spindle assembly // not recorded /// 0060318 // definitive erythrocyte differentiation // inferred from electronic annotation /// 0060318 // definitive erythrocyte differentiation // not recorded 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded /// 0017053 // transcriptional repressor complex // not recorded /// 0044428 // nuclear part // inferred from electronic annotation /// 0044428 // nuclear part // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0035033 // histone deacetylase regulator activity // inferred from electronic annotation /// 0035033 // histone deacetylase regulator activity // not recorded /// 0042826 // histone deacetylase binding // not recorded /// 0042974 // retinoic acid receptor binding // not recorded /// 0042974 // retinoic acid receptor binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // not recorded /// 0046966 // thyroid hormone receptor binding // inferred from electronic annotation /// 0046966 // thyroid hormone receptor binding // not recorded 1384294_at BF414285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414285 /DB_XREF=gi:11402274 /DB_XREF=UI-R-BJ2-boo-f-03-0-UI.s1 /CLONE=UI-R-BJ2-boo-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.16262.1 /TIER=ConsEnd /STK=0 /UG=Rn.16262 /UG_TITLE=ESTs BF414285 1384295_at AI111363 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111363 /DB_XREF=gi:3511405 /DB_XREF=UI-R-Y0-ma-f-06-0-UI.s1 /CLONE=UI-R-Y0-ma-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.29877.1 /TIER=ConsEnd /STK=0 /UG=Rn.29877 /UG_TITLE=ESTs AI111363 heat shock protein 14 Hspa14 307133 NM_001004257 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1384296_at AI136388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136388 /DB_XREF=gi:3637165 /DB_XREF=UI-R-C2p-od-e-02-0-UI.s1 /CLONE=UI-R-C2p-od-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.27114.1 /TIER=ConsEnd /STK=0 /UG=Rn.27114 /UG_TITLE=ESTs AI136388 1384297_at AI555088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555088 /DB_XREF=gi:4487451 /DB_XREF=UI-R-C2p-qn-d-11-0-UI.s1 /CLONE=UI-R-C2p-qn-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.47636.1 /TIER=ConsEnd /STK=0 /UG=Rn.47636 /UG_TITLE=ESTs AI555088 1384298_at AI764088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764088 /DB_XREF=gi:5210023 /DB_XREF=UI-R-Y0-acy-f-12-0-UI.s1 /CLONE=UI-R-Y0-acy-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.41734.1 /TIER=ConsEnd /STK=0 /UG=Rn.41734 /UG_TITLE=ESTs, Weakly similar to S52517 myosin I heavy chain - rat (R.norvegicus) AI764088 myosin IF Myo1f 314654 NM_001108076 0002446 // neutrophil mediated immunity // not recorded /// 0007162 // negative regulation of cell adhesion // not recorded /// 0030335 // positive regulation of cell migration // not recorded /// 0032956 // regulation of actin cytoskeleton organization // not recorded /// 0043312 // neutrophil degranulation // not recorded /// 0045088 // regulation of innate immune response // not recorded /// 0050830 // defense response to Gram-positive bacterium // not recorded 0016459 // myosin complex // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // not recorded /// 0031941 // filamentous actin // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1384300_at AW921534 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921534 /DB_XREF=gi:8087358 /DB_XREF=EST352838 /CLONE=RGIIA49 /FEA=EST /CNT=3 /TID=Rn.22816.2 /TIER=ConsEnd /STK=0 /UG=Rn.22816 /UG_TITLE=ESTs AW921534 1384301_at BE113571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113571 /DB_XREF=gi:8505676 /DB_XREF=UI-R-CA0-axq-h-02-0-UI.s1 /CLONE=UI-R-CA0-axq-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.3665.1 /TIER=ConsEnd /STK=0 /UG=Rn.3665 /UG_TITLE=ESTs BE113571 1384302_at AI712791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712791 /DB_XREF=gi:5016591 /DB_XREF=UI-R-AF1-aax-e-10-0-UI.s1 /CLONE=UI-R-AF1-aax-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.24606.1 /TIER=ConsEnd /STK=0 /UG=Rn.24606 /UG_TITLE=ESTs AI712791 solute carrier family 6 (neurotransmitter transporter), member 17 Slc6a17 613226 NM_001033079 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation 1384303_s_at AI712791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712791 /DB_XREF=gi:5016591 /DB_XREF=UI-R-AF1-aax-e-10-0-UI.s1 /CLONE=UI-R-AF1-aax-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.24606.1 /TIER=ConsEnd /STK=0 /UG=Rn.24606 /UG_TITLE=ESTs AI712791 solute carrier family 6 (neurotransmitter transporter), member 17 Slc6a17 613226 NM_001033079 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation 1384304_at AW524615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524615 /DB_XREF=gi:7167000 /DB_XREF=UI-R-BO0-aia-d-11-0-UI.s1 /CLONE=UI-R-BO0-aia-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.45890.1 /TIER=ConsEnd /STK=0 /UG=Rn.45890 /UG_TITLE=ESTs AW524615 1384305_at BF413040 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413040 /DB_XREF=gi:11400992 /DB_XREF=UI-R-BT1-bnv-d-12-0-UI.s1 /CLONE=UI-R-BT1-bnv-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.46217.1 /TIER=ConsEnd /STK=0 /UG=Rn.46217 /UG_TITLE=ESTs BF413040 solute carrier family 45, member 1 Slc45a1 246258 NM_144747 0006810 // transport // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0015758 // glucose transport // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005355 // glucose transmembrane transporter activity // inferred from mutant phenotype /// 0015293 // symporter activity // inferred from electronic annotation 1384306_at BE110960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110960 /DB_XREF=gi:8503065 /DB_XREF=UI-R-BJ1-aux-h-10-0-UI.s1 /CLONE=UI-R-BJ1-aux-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.19818.1 /TIER=ConsEnd /STK=0 /UG=Rn.19818 /UG_TITLE=ESTs, Moderately similar to I48680 transcription factor EPS - mouse (M.musculus) BE110960 ELK3, member of ETS oncogene family Elk3 362871 NM_001108743 0001525 // angiogenesis // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0042060 // wound healing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005739 // mitochondrion // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0032422 // purine-rich negative regulatory element binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1384307_at AI073243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073243 /DB_XREF=gi:3399437 /DB_XREF=UI-R-Y0-lx-h-09-0-UI.s1 /CLONE=UI-R-Y0-lx-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.20399.1 /TIER=ConsEnd /STK=0 /UG=Rn.20399 /UG_TITLE=ESTs AI073243 1384308_at AW532697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532697 /DB_XREF=gi:7175111 /DB_XREF=UI-R-BS0-amq-b-04-0-UI.s1 /CLONE=UI-R-BS0-amq-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.32269.1 /TIER=ConsEnd /STK=0 /UG=Rn.32269 /UG_TITLE=ESTs AW532697 Meis homeobox 1 Meis1 686117 NM_001134702 0001525 // angiogenesis // not recorded /// 0002089 // lens morphogenesis in camera-type eye // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0030097 // hemopoiesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0048514 // blood vessel morphogenesis // not recorded /// 0060216 // definitive hemopoiesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1384309_at BF393535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393535 /DB_XREF=gi:11378397 /DB_XREF=UI-R-CA0-bgd-a-10-0-UI.s1 /CLONE=UI-R-CA0-bgd-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.7284.1 /TIER=ConsEnd /STK=0 /UG=Rn.7284 /UG_TITLE=ESTs BF393535 1384310_at BM383081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383081 /DB_XREF=gi:18183134 /DB_XREF=UI-R-DS0-cje-h-15-0-UI.s1 /CLONE=UI-R-DS0-cje-h-15-0-UI /FEA=EST /CNT=3 /TID=Rn.23945.2 /TIER=ConsEnd /STK=0 /UG=Rn.23945 /UG_TITLE=ESTs BM383081 1384311_at BE113314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113314 /DB_XREF=gi:8505384 /DB_XREF=UI-R-BJ1-awd-f-01-0-UI.s1 /CLONE=UI-R-BJ1-awd-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.41307.1 /TIER=ConsEnd /STK=0 /UG=Rn.41307 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) BE113314 PR domain containing 5 Prdm5 689788 XM_001072014 /// XM_002726382 /// XM_002726383 0000278 // mitotic cell cycle // not recorded /// 0016575 // histone deacetylation // not recorded /// 0051567 // histone H3-K9 methylation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070491 // transcription repressor binding // not recorded 1384312_at BF543574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543574 /DB_XREF=gi:11634681 /DB_XREF=UI-R-C3-tt-d-06-0-UI.r1 /CLONE=UI-R-C3-tt-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.42020.1 /TIER=ConsEnd /STK=0 /UG=Rn.42020 /UG_TITLE=ESTs BF543574 iroquois homeobox 1 Irx1 306659 NM_001107331 0001656 // metanephros development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0072086 // specification of loop of Henle identity // not recorded /// 0072272 // proximal/distal pattern formation involved in metanephric nephron development // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1384313_at BF412520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412520 /DB_XREF=gi:11400509 /DB_XREF=UI-R-BT1-bno-e-12-0-UI.s1 /CLONE=UI-R-BT1-bno-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.47855.1 /TIER=ConsEnd /STK=0 /UG=Rn.47855 /UG_TITLE=ESTs BF412520 1384314_at BM383771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383771 /DB_XREF=gi:18183824 /DB_XREF=UI-R-DM1-ckb-d-23-0-UI.s1 /CLONE=UI-R-DM1-ckb-d-23-0-UI /FEA=EST /CNT=3 /TID=Rn.48583.1 /TIER=ConsEnd /STK=0 /UG=Rn.48583 /UG_TITLE=ESTs, Moderately similar to A55628 translation initiation factor IF-2 precursor, mitochondrial (H.sapiens) BM383771 mitochondrial translational initiation factor 2 Mtif2 305606 NM_001004254 0006412 // translation // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // traceable author statement /// 0006413 // translational initiation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // traceable author statement /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation /// 0008135 // translation factor activity, nucleic acid binding // inferred from sequence or structural similarity /// 0043024 // ribosomal small subunit binding // inferred from sequence or structural similarity 1384315_at BM389330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389330 /DB_XREF=gi:18189383 /DB_XREF=UI-R-DZ0-cko-n-12-0-UI.s1 /CLONE=UI-R-DZ0-cko-n-12-0-UI /FEA=EST /CNT=3 /TID=Rn.53121.1 /TIER=ConsEnd /STK=0 /UG=Rn.53121 /UG_TITLE=ESTs, Moderately similar to PDK1 RAT (R.norvegicus) BM389330 pyruvate dehydrogenase kinase, isozyme 3 Pdk3 296849 NM_001106581 0007165 // signal transduction // inferred from electronic annotation /// 0010510 // regulation of acetyl-CoA biosynthetic process from pyruvate // not recorded /// 0018106 // peptidyl-histidine phosphorylation // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000155 // two-component sensor activity // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004673 // protein histidine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1384316_at BF399317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399317 /DB_XREF=gi:11384321 /DB_XREF=UI-R-CA1-bjb-a-22-0-UI.s1 /CLONE=UI-R-CA1-bjb-a-22-0-UI /FEA=EST /CNT=3 /TID=Rn.12451.1 /TIER=ConsEnd /STK=0 /UG=Rn.12451 /UG_TITLE=ESTs BF399317 1384317_at BF413978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413978 /DB_XREF=gi:11401967 /DB_XREF=UI-R-BJ2-bol-a-06-0-UI.s1 /CLONE=UI-R-BJ2-bol-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.12656.1 /TIER=ConsEnd /STK=0 /UG=Rn.12656 /UG_TITLE=ESTs BF413978 1384318_at BE100696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100696 /DB_XREF=gi:8492634 /DB_XREF=UI-R-BJ1-atu-g-08-0-UI.s1 /CLONE=UI-R-BJ1-atu-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.20402.1 /TIER=ConsEnd /STK=0 /UG=Rn.20402 /UG_TITLE=ESTs BE100696 Torsin family 2, member A Tor2a 362112 NM_001007744 0006412 // translation // inferred from electronic annotation /// 0051085 // chaperone mediated protein folding requiring cofactor // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004045 // aminoacyl-tRNA hydrolase activity // inferred from electronic annotation /// 0005179 // hormone activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1384319_at BE098518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098518 /DB_XREF=gi:8490382 /DB_XREF=UI-R-BJ1-atc-h-05-0-UI.s1 /CLONE=UI-R-BJ1-atc-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.23125.1 /TIER=ConsEnd /STK=0 /UG=Rn.23125 /UG_TITLE=ESTs BE098518 Tousled-like kinase 2 Tlk2 303592 NM_001191652 /// XM_001067052 /// XM_001081561 /// XM_002724571 /// XM_221023 0001672 // regulation of chromatin assembly or disassembly // inferred from electronic annotation /// 0001672 // regulation of chromatin assembly or disassembly // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded 1384320_at BE121330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121330 /DB_XREF=gi:8513435 /DB_XREF=UI-R-CA0-baw-f-07-0-UI.s1 /CLONE=UI-R-CA0-baw-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.24379.1 /TIER=ConsEnd /STK=0 /UG=Rn.24379 /UG_TITLE=ESTs BE121330 brain-specific angiogenesis inhibitor 3 Bai3 301309 NM_001106898 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0016527 // brain-specific angiogenesis inhibitor activity // inferred from electronic annotation 1384321_at BE098291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098291 /DB_XREF=gi:8490154 /DB_XREF=UI-R-BJ1-asy-a-03-0-UI.s1 /CLONE=UI-R-BJ1-asy-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.49779.1 /TIER=ConsEnd /STK=0 /UG=Rn.49779 /UG_TITLE=ESTs BE098291 1384322_at BE107680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107680 /DB_XREF=gi:8499785 /DB_XREF=UI-R-BT1-ame-f-02-0-UI.s1 /CLONE=UI-R-BT1-ame-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.51244.1 /TIER=ConsEnd /STK=0 /UG=Rn.51244 /UG_TITLE=ESTs BE107680 1384323_at BF418369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418369 /DB_XREF=gi:11406358 /DB_XREF=UI-R-BJ2-box-f-02-0-UI.s1 /CLONE=UI-R-BJ2-box-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.6773.1 /TIER=ConsEnd /STK=0 /UG=Rn.6773 /UG_TITLE=ESTs, Weakly similar to PRS7 RAT 26S PROTEASE REGULATORY SUBUNIT 7 (R.norvegicus) BF418369 proteasome (prosome, macropain) 26S subunit, ATPase, 6 Psmc6 289990 NM_001100509 0030163 // protein catabolic process // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation /// 0000502 // proteasome complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1384324_at AW522810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522810 /DB_XREF=gi:7165195 /DB_XREF=UI-R-BO0-ahn-a-09-0-UI.s1 /CLONE=UI-R-BO0-ahn-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.7738.1 /TIER=ConsEnd /STK=0 /UG=Rn.7738 /UG_TITLE=ESTs, Highly similar to S20710 hypothetical protein, 16K - mouse (M.musculus) AW522810 RNA binding motif protein 4 Rbm4 293663 NM_001170484 /// XM_002725767 /// XM_215201 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1384325_at BF546645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546645 /DB_XREF=gi:11637752 /DB_XREF=UI-R-C1-lh-c-07-0-UI.r1 /CLONE=UI-R-C1-lh-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.19272.1 /TIER=ConsEnd /STK=0 /UG=Rn.19272 /UG_TITLE=ESTs BF546645 palate, lung, and nasal epithelium associated Plunc 246238 NM_172031 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region // inferred from electronic annotation /// 0005902 // microvillus // inferred from direct assay 0008289 // lipid binding // inferred from electronic annotation 1384326_at BF560443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF560443 /DB_XREF=gi:11670173 /DB_XREF=UI-R-E1-ga-e-08-0-UI.r1 /CLONE=UI-R-E1-ga-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.22671.2 /TIER=ConsEnd /STK=0 /UG=Rn.22671 /UG_TITLE=ESTs BF560443 1384327_at BI291728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291728 /DB_XREF=gi:14951554 /DB_XREF=UI-R-DM0-cis-f-10-0-UI.s1 /CLONE=UI-R-DM0-cis-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.34478.1 /TIER=ConsEnd /STK=0 /UG=Rn.34478 /UG_TITLE=ESTs BI291728 differentially expressed in FDCP 8 homolog (mouse) Def8 307973 NM_001024774 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384328_at AW524820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524820 /DB_XREF=gi:7167205 /DB_XREF=UI-R-BO0-ahy-f-10-0-UI.s1 /CLONE=UI-R-BO0-ahy-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.37573.1 /TIER=ConsEnd /STK=0 /UG=Rn.37573 /UG_TITLE=ESTs, Highly similar to B Chain B, Vhs Domain Of Tom1 Protein From H. Sapien (H.sapiens) AW524820 target of myb1 homolog (chicken) Tom1 361370 NM_001008365 0006886 // intracellular protein transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005769 // early endosome // not recorded /// 0005813 // centrosome // not recorded /// 0005829 // cytosol // not recorded /// 0016020 // membrane // not recorded 0005515 // protein binding // not recorded 1384329_at BM389391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389391 /DB_XREF=gi:18189444 /DB_XREF=UI-R-CN1-cjk-i-03-0-UI.s1 /CLONE=UI-R-CN1-cjk-i-03-0-UI /FEA=EST /CNT=3 /TID=Rn.41588.1 /TIER=ConsEnd /STK=0 /UG=Rn.41588 /UG_TITLE=ESTs BM389391 protease, serine, 22 Prss22 302971 NM_001106984 0006508 // proteolysis // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1384330_at AI763467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763467 /DB_XREF=gi:5209408 /DB_XREF=UI-R-Y0-abh-d-07-0-UI.s1 /CLONE=UI-R-Y0-abh-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.67409.1 /TIER=ConsEnd /STK=0 /UG=Rn.67409 /UG_TITLE=ESTs, Weakly similar to S64315 hypothetical protein YGR024c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AI763467 tRNA-histidine guanylyltransferase 1-like (S. cerevisiae) Thg1l 303067 NM_001013966 0006400 // tRNA modification // inferred from sequence or structural similarity /// 0008033 // tRNA processing // inferred from electronic annotation 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0008193 // tRNA guanylyltransferase activity // inferred from sequence or structural similarity /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1384331_at H31896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31896 /DB_XREF=gi:977313 /DB_XREF=EST106436 /CLONE=RPCBC54 /FEA=EST /CNT=3 /TID=Rn.25020.1 /TIER=ConsEnd /STK=0 /UG=Rn.25020 /UG_TITLE=ESTs H31896 sulfiredoxin 1 homolog (S. cerevisiae) Srxn1 296271 NM_001047858 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0008152 // metabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0016667 // oxidoreductase activity, acting on a sulfur group of donors // inferred from electronic annotation /// 0016667 // oxidoreductase activity, acting on a sulfur group of donors // not recorded /// 0032542 // sulfiredoxin activity // inferred from electronic annotation 1384332_at AI501967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501967 /DB_XREF=gi:4399818 /DB_XREF=UI-R-C0-jb-a-08-0-UI.s1 /CLONE=UI-R-C0-jb-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.24418.1 /TIER=ConsEnd /STK=0 /UG=Rn.24418 /UG_TITLE=ESTs AI501967 1384333_at AW920881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920881 /DB_XREF=gi:8086698 /DB_XREF=EST352185 /CLONE=RGIHH82 /FEA=EST /CNT=3 /TID=Rn.65169.1 /TIER=ConsEnd /STK=0 /UG=Rn.65169 /UG_TITLE=ESTs, Highly similar to ARP2_HUMAN ACTIN-LIKE PROTEIN 2 (H.sapiens) AW920881 ARP2 actin-related protein 2 homolog (yeast) Actr2 289820 NM_001009268 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1384334_at AI547761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547761 /DB_XREF=gi:4465249 /DB_XREF=UI-R-C3-sj-e-01-0-UI.s1 /CLONE=UI-R-C3-sj-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.19334.1 /TIER=ConsEnd /STK=0 /UG=Rn.19334 /UG_TITLE=ESTs AI547761 1384335_at BE111885 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111885 /DB_XREF=gi:8503990 /DB_XREF=UI-R-BS1-azu-b-05-0-UI.s1 /CLONE=UI-R-BS1-azu-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.40362.1 /TIER=ConsEnd /STK=0 /UG=Rn.40362 /UG_TITLE=ESTs BE111885 B-cell CLL/lymphoma 9-like Bcl9l 300673 NM_001106817 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0022604 // regulation of cell morphogenesis // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded 1384336_at BF290224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290224 /DB_XREF=gi:11221294 /DB_XREF=EST454815 /CLONE=RGIHU08 /FEA=EST /CNT=3 /TID=Rn.12309.2 /TIER=ConsEnd /STK=0 /UG=Rn.12309 /UG_TITLE=ESTs, Highly similar to CLN3 MOUSE CLN3 PROTEIN (M.musculus) BF290224 ceroid-lipofuscinosis, neuronal 3 Cln3 293485 NM_001006971 0000046 // autophagic vacuole fusion // inferred from electronic annotation /// 0000046 // autophagic vacuole fusion // not recorded /// 0001508 // regulation of action potential // inferred from electronic annotation /// 0001508 // regulation of action potential // not recorded /// 0001575 // globoside metabolic process // not recorded /// 0001575 // globoside metabolic process // inferred from sequence or structural similarity /// 0001575 // globoside metabolic process // inferred from electronic annotation /// 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006520 // cellular amino acid metabolic process // not recorded /// 0006672 // ceramide metabolic process // not recorded /// 0006672 // ceramide metabolic process // inferred from sequence or structural similarity /// 0006672 // ceramide metabolic process // inferred from electronic annotation /// 0006678 // glucosylceramide metabolic process // not recorded /// 0006678 // glucosylceramide metabolic process // inferred from sequence or structural similarity /// 0006678 // glucosylceramide metabolic process // inferred from electronic annotation /// 0006681 // galactosylceramide metabolic process // not recorded /// 0006681 // galactosylceramide metabolic process // inferred from sequence or structural similarity /// 0006681 // galactosylceramide metabolic process // inferred from electronic annotation /// 0006684 // sphingomyelin metabolic process // not recorded /// 0006684 // sphingomyelin metabolic process // inferred from sequence or structural similarity /// 0006684 // sphingomyelin metabolic process // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded /// 0006898 // receptor-mediated endocytosis // not recorded /// 0006898 // receptor-mediated endocytosis // inferred from sequence or structural similarity /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0007040 // lysosome organization // not recorded /// 0007040 // lysosome organization // inferred from electronic annotation /// 0007042 // lysosomal lumen acidification // not recorded /// 0007042 // lysosomal lumen acidification // inferred from sequence or structural similarity /// 0007042 // lysosomal lumen acidification // inferred from electronic annotation /// 0008306 // associative learning // inferred from electronic annotation /// 0008306 // associative learning // not recorded /// 0015809 // arginine transport // not recorded /// 0015809 // arginine transport // inferred from sequence or structural similarity /// 0015809 // arginine transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016236 // macroautophagy // not recorded /// 0016236 // macroautophagy // inferred from electronic annotation /// 0016242 // negative regulation of macroautophagy // inferred from electronic annotation /// 0016242 // negative regulation of macroautophagy // not recorded /// 0016485 // protein processing // inferred from electronic annotation /// 0016485 // protein processing // not recorded /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from electronic annotation /// 0035235 // ionotropic glutamate receptor signaling pathway // not recorded /// 0042133 // neurotransmitter metabolic process // inferred from electronic annotation /// 0042133 // neurotransmitter metabolic process // not recorded /// 0042987 // amyloid precursor protein catabolic process // not recorded /// 0042987 // amyloid precursor protein catabolic process // inferred from sequence or structural similarity /// 0042987 // amyloid precursor protein catabolic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045861 // negative regulation of proteolysis // inferred from electronic annotation /// 0045861 // negative regulation of proteolysis // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0051453 // regulation of intracellular pH // not recorded /// 0051453 // regulation of intracellular pH // inferred from sequence or structural similarity /// 0051453 // regulation of intracellular pH // inferred from electronic annotation /// 0051480 // cytosolic calcium ion homeostasis // inferred from electronic annotation /// 0051480 // cytosolic calcium ion homeostasis // not recorded 0000139 // Golgi membrane // not recorded /// 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from sequence or structural similarity /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from sequence or structural similarity /// 0005764 // lysosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from sequence or structural similarity /// 0005769 // early endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005776 // autophagic vacuole // inferred from electronic annotation /// 0005776 // autophagic vacuole // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // not recorded /// 0005795 // Golgi stack // inferred from sequence or structural similarity /// 0005795 // Golgi stack // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005802 // trans-Golgi network // inferred from sequence or structural similarity /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0005901 // caveola // inferred from sequence or structural similarity /// 0005901 // caveola // inferred from electronic annotation /// 0008021 // synaptic vesicle // not recorded /// 0008021 // synaptic vesicle // inferred from sequence or structural similarity /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded /// 0030176 // integral to endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0043005 // neuron projection // inferred from sequence or structural similarity /// 0043005 // neuron projection // inferred from electronic annotation /// 0044433 // cytoplasmic vesicle part // inferred from electronic annotation /// 0044433 // cytoplasmic vesicle part // not recorded /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from sequence or structural similarity /// 0045121 // membrane raft // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded 1384337_x_at BF290224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290224 /DB_XREF=gi:11221294 /DB_XREF=EST454815 /CLONE=RGIHU08 /FEA=EST /CNT=3 /TID=Rn.12309.2 /TIER=ConsEnd /STK=0 /UG=Rn.12309 /UG_TITLE=ESTs, Highly similar to CLN3 MOUSE CLN3 PROTEIN (M.musculus) BF290224 ceroid-lipofuscinosis, neuronal 3 Cln3 293485 NM_001006971 0000046 // autophagic vacuole fusion // inferred from electronic annotation /// 0000046 // autophagic vacuole fusion // not recorded /// 0001508 // regulation of action potential // inferred from electronic annotation /// 0001508 // regulation of action potential // not recorded /// 0001575 // globoside metabolic process // not recorded /// 0001575 // globoside metabolic process // inferred from sequence or structural similarity /// 0001575 // globoside metabolic process // inferred from electronic annotation /// 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006520 // cellular amino acid metabolic process // not recorded /// 0006672 // ceramide metabolic process // not recorded /// 0006672 // ceramide metabolic process // inferred from sequence or structural similarity /// 0006672 // ceramide metabolic process // inferred from electronic annotation /// 0006678 // glucosylceramide metabolic process // not recorded /// 0006678 // glucosylceramide metabolic process // inferred from sequence or structural similarity /// 0006678 // glucosylceramide metabolic process // inferred from electronic annotation /// 0006681 // galactosylceramide metabolic process // not recorded /// 0006681 // galactosylceramide metabolic process // inferred from sequence or structural similarity /// 0006681 // galactosylceramide metabolic process // inferred from electronic annotation /// 0006684 // sphingomyelin metabolic process // not recorded /// 0006684 // sphingomyelin metabolic process // inferred from sequence or structural similarity /// 0006684 // sphingomyelin metabolic process // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded /// 0006898 // receptor-mediated endocytosis // not recorded /// 0006898 // receptor-mediated endocytosis // inferred from sequence or structural similarity /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0007040 // lysosome organization // not recorded /// 0007040 // lysosome organization // inferred from electronic annotation /// 0007042 // lysosomal lumen acidification // not recorded /// 0007042 // lysosomal lumen acidification // inferred from sequence or structural similarity /// 0007042 // lysosomal lumen acidification // inferred from electronic annotation /// 0008306 // associative learning // inferred from electronic annotation /// 0008306 // associative learning // not recorded /// 0015809 // arginine transport // not recorded /// 0015809 // arginine transport // inferred from sequence or structural similarity /// 0015809 // arginine transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016236 // macroautophagy // not recorded /// 0016236 // macroautophagy // inferred from electronic annotation /// 0016242 // negative regulation of macroautophagy // inferred from electronic annotation /// 0016242 // negative regulation of macroautophagy // not recorded /// 0016485 // protein processing // inferred from electronic annotation /// 0016485 // protein processing // not recorded /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from electronic annotation /// 0035235 // ionotropic glutamate receptor signaling pathway // not recorded /// 0042133 // neurotransmitter metabolic process // inferred from electronic annotation /// 0042133 // neurotransmitter metabolic process // not recorded /// 0042987 // amyloid precursor protein catabolic process // not recorded /// 0042987 // amyloid precursor protein catabolic process // inferred from sequence or structural similarity /// 0042987 // amyloid precursor protein catabolic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045861 // negative regulation of proteolysis // inferred from electronic annotation /// 0045861 // negative regulation of proteolysis // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0051453 // regulation of intracellular pH // not recorded /// 0051453 // regulation of intracellular pH // inferred from sequence or structural similarity /// 0051453 // regulation of intracellular pH // inferred from electronic annotation /// 0051480 // cytosolic calcium ion homeostasis // inferred from electronic annotation /// 0051480 // cytosolic calcium ion homeostasis // not recorded 0000139 // Golgi membrane // not recorded /// 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from sequence or structural similarity /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from sequence or structural similarity /// 0005764 // lysosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from sequence or structural similarity /// 0005769 // early endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005776 // autophagic vacuole // inferred from electronic annotation /// 0005776 // autophagic vacuole // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // not recorded /// 0005795 // Golgi stack // inferred from sequence or structural similarity /// 0005795 // Golgi stack // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005802 // trans-Golgi network // inferred from sequence or structural similarity /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0005901 // caveola // inferred from sequence or structural similarity /// 0005901 // caveola // inferred from electronic annotation /// 0008021 // synaptic vesicle // not recorded /// 0008021 // synaptic vesicle // inferred from sequence or structural similarity /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded /// 0030176 // integral to endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0043005 // neuron projection // inferred from sequence or structural similarity /// 0043005 // neuron projection // inferred from electronic annotation /// 0044433 // cytoplasmic vesicle part // inferred from electronic annotation /// 0044433 // cytoplasmic vesicle part // not recorded /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from sequence or structural similarity /// 0045121 // membrane raft // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded 1384338_at AW525128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525128 /DB_XREF=gi:7167513 /DB_XREF=UI-R-BJ0p-aio-b-03-0-UI.s1 /CLONE=UI-R-BJ0p-aio-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.37763.3 /TIER=ConsEnd /STK=0 /UG=Rn.37763 /UG_TITLE=ESTs, Highly similar to CC45_MOUSE CDC45-RELATED PROTEIN (PORC-PI-1) (M.musculus) AW525128 CDC45 cell division cycle 45-like (S. cerevisiae) Cdc45l 287961 NM_001105866 0006260 // DNA replication // not recorded /// 0006270 // DNA-dependent DNA replication initiation // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // not recorded 0005515 // protein binding // not recorded 1384339_s_at BF288177 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288177 /DB_XREF=gi:11219247 /DB_XREF=EST452768 /CLONE=RGIGQ47 /FEA=EST /CNT=3 /TID=Rn.55513.1 /TIER=ConsEnd /STK=0 /UG=Rn.55513 /UG_TITLE=ESTs, Highly similar to CASEIN KINASE II, ALPHA CHAIN (R.norvegicus) BF288177 casein kinase 2, alpha 1 polypeptide Csnk2a1 116549 NM_053824 0001558 // regulation of cell growth // non-traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // non-traceable author statement /// 0046777 // protein autophosphorylation // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005956 // protein kinase CK2 complex // traceable author statement /// 0016580 // Sin3 complex // not recorded /// 0016581 // NuRD complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019888 // protein phosphatase regulator activity // not recorded /// 0047485 // protein N-terminus binding // not recorded 1384340_a_at AA997134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997134 /DB_XREF=gi:4281761 /DB_XREF=UI-R-C0-hq-b-10-0-UI.s1 /CLONE=UI-R-C0-hq-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.12061.2 /TIER=ConsEnd /STK=0 /UG=Rn.12061 /UG_TITLE=ESTs, Highly similar to N-acetyltransferase, homolog of S. cerevisiae ARD1; N-acetyltransferase ARD1, human homolog of (Homo sapiens) (H.sapiens) AA997134 ARD1 homolog A, N-acetyltransferase (S. cerevisiae) Ard1a 363518 NM_001135839 0006474 // N-terminal protein amino acid acetylation // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0005622 // intracellular // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0008080 // N-acetyltransferase activity // not recorded /// 0016407 // acetyltransferase activity // not recorded /// 0043022 // ribosome binding // not recorded 1384341_at AI136853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136853 /DB_XREF=gi:3637630 /DB_XREF=UI-R-C2p-of-c-05-0-UI.s1 /CLONE=UI-R-C2p-of-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.27241.1 /TIER=ConsEnd /STK=0 /UG=Rn.27241 /UG_TITLE=ESTs, Moderately similar to PROTO-ONCOGENE TYROSINE-PROTEIN KINASE FESFPS (M.musculus) AI136853 fatty acid amide hydrolase Faah 29347 NM_024132 0006631 // fatty acid metabolic process // inferred from mutant phenotype /// 0006631 // fatty acid metabolic process // traceable author statement /// 0009062 // fatty acid catabolic process // inferred from direct assay /// 0009062 // fatty acid catabolic process // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred by curator /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031090 // organelle membrane // inferred from direct assay 0004040 // amidase activity // inferred from direct assay /// 0005543 // phospholipid binding // inferred from mutant phenotype /// 0008289 // lipid binding // inferred from direct assay /// 0008289 // lipid binding // inferred from mutant phenotype /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from direct assay /// 0016884 // carbon-nitrogen ligase activity, with glutamine as amido-N-donor // inferred from electronic annotation /// 0017064 // fatty acid amide hydrolase activity // inferred from direct assay /// 0017064 // fatty acid amide hydrolase activity // inferred from mutant phenotype /// 0017064 // fatty acid amide hydrolase activity // not recorded /// 0017064 // fatty acid amide hydrolase activity // traceable author statement /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from mutant phenotype 1384342_at AW915747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915747 /DB_XREF=gi:8081454 /DB_XREF=EST347051 /CLONE=RGIDA24 /FEA=EST /CNT=3 /TID=Rn.37745.1 /TIER=ConsEnd /STK=0 /UG=Rn.37745 /UG_TITLE=ESTs, Weakly similar to T20840 hypothetical protein F13E9.1 - Caenorhabditis elegans (C.elegans) AW915747 nischarin Nisch 306255 XM_001057307 /// XM_001058707 /// XM_001058760 /// XM_240330 0006006 // glucose metabolic process // inferred from mutant phenotype /// 0006915 // apoptosis // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0008217 // regulation of blood pressure // inferred from mutant phenotype /// 0016601 // Rac protein signal transduction // not recorded /// 0030036 // actin cytoskeleton organization // not recorded /// 0030336 // negative regulation of cell migration // not recorded /// 0032228 // regulation of synaptic transmission, GABAergic // inferred from mutant phenotype /// 0048243 // norepinephrine secretion // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008227 // G-protein coupled amine receptor activity // inferred from direct assay /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1384343_at BE112536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112536 /DB_XREF=gi:8504641 /DB_XREF=UI-R-BJ1-avi-g-11-0-UI.s1 /CLONE=UI-R-BJ1-avi-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.19276.1 /TIER=ConsEnd /STK=0 /UG=Rn.19276 /UG_TITLE=ESTs, Weakly similar to env polyprotein, retrovirus-related (M.musculus) BE112536 1384344_at AI060231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060231 /DB_XREF=gi:3334008 /DB_XREF=UI-R-C1-lm-g-04-0-UI.s1 /CLONE=UI-R-C1-lm-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.19397.1 /TIER=ConsEnd /STK=0 /UG=Rn.19397 /UG_TITLE=ESTs, Weakly similar to FKBP65 binding protein (M.musculus) AI060231 FK506 binding protein 7 Fkbp7 295672 NM_001106485 0006457 // protein folding // inferred from electronic annotation 0005783 // endoplasmic reticulum // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // not recorded 1384345_at AW527197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527197 /DB_XREF=gi:7169611 /DB_XREF=UI-R-BO1-ajm-f-03-0-UI.s1 /CLONE=UI-R-BO1-ajm-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.65575.1 /TIER=ConsEnd /STK=0 /UG=Rn.65575 /UG_TITLE=ESTs, Weakly similar to LB4D_HUMAN NADP-DEPENDENT LEUKOTRIENE B4 12-HYDROXYDEHYDROGENASE (H.sapiens) AW527197 prostaglandin reductase 2 Ptgr2 299194 NM_001015009 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0047522 // 15-oxoprostaglandin 13-oxidase activity // inferred from electronic annotation 1384346_at AA964754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964754 /DB_XREF=gi:4279628 /DB_XREF=UI-R-C0-gx-h-06-0-UI.s1 /CLONE=UI-R-C0-gx-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.11905.1 /TIER=ConsEnd /STK=0 /UG=Rn.11905 /UG_TITLE=ESTs AA964754 1384347_at BF386587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386587 /DB_XREF=gi:11371411 /DB_XREF=UI-R-CA1-bbf-c-02-0-UI.s1 /CLONE=UI-R-CA1-bbf-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.120.1 /TIER=ConsEnd /STK=0 /UG=Rn.120 /UG_TITLE=ESTs BF386587 SHC (Src homology 2 domain containing) transforming protein 2 Shc2 314612 NM_001108065 0007265 // Ras protein signal transduction // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1384348_at AI548285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548285 /DB_XREF=gi:4465773 /DB_XREF=UI-R-C3-ti-g-05-0-UI.s1 /CLONE=UI-R-C3-ti-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.24565.1 /TIER=ConsEnd /STK=0 /UG=Rn.24565 /UG_TITLE=ESTs AI548285 transcription factor 23 Tcf23 688600 XM_001067558 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0030528 // transcription regulator activity // inferred from electronic annotation 1384349_at AI577326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577326 /DB_XREF=gi:4561702 /DB_XREF=UI-R-Y0-vn-a-02-0-UI.s1 /CLONE=UI-R-Y0-vn-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.38461.1 /TIER=ConsEnd /STK=0 /UG=Rn.38461 /UG_TITLE=ESTs, Highly similar to T00075 hypothetical protein KIAA0461 (H.sapiens) AI577326 pogo transposable element with ZNF domain Pogz 310658 NM_001107693 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1384350_at BM388989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388989 /DB_XREF=gi:18189042 /DB_XREF=UI-R-DZ0-ckn-h-22-0-UI.s1 /CLONE=UI-R-DZ0-ckn-h-22-0-UI /FEA=EST /CNT=3 /TID=Rn.11994.1 /TIER=ConsEnd /STK=0 /UG=Rn.11994 /UG_TITLE=ESTs BM388989 NCK associated protein 1 like Nckap1l 315348 NM_001108119 0001782 // B cell homeostasis // inferred from sequence or structural similarity /// 0002262 // myeloid cell homeostasis // inferred from sequence or structural similarity /// 0006461 // protein complex assembly // inferred from sequence or structural similarity /// 0030011 // maintenance of cell polarity // inferred from sequence or structural similarity /// 0030593 // neutrophil chemotaxis // inferred from sequence or structural similarity /// 0030838 // positive regulation of actin filament polymerization // inferred from sequence or structural similarity /// 0030866 // cortical actin cytoskeleton organization // inferred from sequence or structural similarity /// 0030890 // positive regulation of B cell proliferation // inferred from sequence or structural similarity /// 0032700 // negative regulation of interleukin-17 production // inferred from sequence or structural similarity /// 0032715 // negative regulation of interleukin-6 production // inferred from sequence or structural similarity /// 0033630 // positive regulation of cell adhesion mediated by integrin // inferred from sequence or structural similarity /// 0035509 // negative regulation of myosin-light-chain-phosphatase activity // inferred from sequence or structural similarity /// 0042102 // positive regulation of T cell proliferation // inferred from sequence or structural similarity /// 0042221 // response to chemical stimulus // inferred from sequence or structural similarity /// 0042327 // positive regulation of phosphorylation // inferred from sequence or structural similarity /// 0042493 // response to drug // inferred from sequence or structural similarity /// 0043029 // T cell homeostasis // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0043372 // positive regulation of CD4-positive, alpha beta T cell differentiation // inferred from sequence or structural similarity /// 0043378 // positive regulation of CD8-positive, alpha-beta T cell differentiation // inferred from sequence or structural similarity /// 0045579 // positive regulation of B cell differentiation // inferred from sequence or structural similarity /// 0045588 // positive regulation of gamma-delta T cell differentiation // inferred from sequence or structural similarity /// 0045621 // positive regulation of lymphocyte differentiation // inferred from sequence or structural similarity /// 0045648 // positive regulation of erythrocyte differentiation // inferred from sequence or structural similarity /// 0050853 // B cell receptor signaling pathway // inferred from sequence or structural similarity /// 0060100 // positive regulation of phagocytosis, engulfment // inferred from sequence or structural similarity /// 0070358 // actin polymerization-dependent cell motility // inferred from sequence or structural similarity /// 0090023 // positive regulation of neutrophil chemotaxis // inferred from sequence or structural similarity 0005829 // cytosol // inferred from sequence or structural similarity /// 0031209 // SCAR complex // inferred from sequence or structural similarity 0030295 // protein kinase activator activity // inferred from sequence or structural similarity /// 0030675 // Rac GTPase activator activity // inferred from sequence or structural similarity /// 0032403 // protein complex binding // inferred from sequence or structural similarity 1384351_at BI290447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290447 /DB_XREF=gi:14949030 /DB_XREF=UI-R-DK0-cfw-d-06-0-UI.s1 /CLONE=UI-R-DK0-cfw-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.15178.1 /TIER=ConsEnd /STK=0 /UG=Rn.15178 /UG_TITLE=ESTs BI290447 TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor Taf7l 363493 NM_001135877 0006367 // transcription initiation from RNA polymerase II promoter // inferred from electronic annotation /// 0007286 // spermatid development // not recorded /// 0030317 // sperm motility // not recorded 0005634 // nucleus // not recorded /// 0005669 // transcription factor TFIID complex // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0010369 // chromocenter // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016251 // general RNA polymerase II transcription factor activity // inferred from electronic annotation 1384352_at AI547390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547390 /DB_XREF=gi:4464878 /DB_XREF=UI-R-C3-tf-b-01-0-UI.s1 /CLONE=UI-R-C3-tf-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.16971.1 /TIER=ConsEnd /STK=0 /UG=Rn.16971 /UG_TITLE=ESTs, Weakly similar to T21592 hypothetical protein F31C3.2 - Caenorhabditis elegans (C.elegans) AI547390 PAP associated domain containing 4 Papd4 361878 NM_001008372 0006397 // mRNA processing // inferred from electronic annotation /// 0043631 // RNA polyadenylation // not recorded /// 0043631 // RNA polyadenylation // inferred from sequence or structural similarity /// 0043631 // RNA polyadenylation // inferred from electronic annotation /// 0071044 // histone mRNA catabolic process // not recorded /// 0071044 // histone mRNA catabolic process // inferred from sequence or structural similarity /// 0071044 // histone mRNA catabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004652 // polynucleotide adenylyltransferase activity // not recorded /// 0004652 // polynucleotide adenylyltransferase activity // inferred from sequence or structural similarity /// 0004652 // polynucleotide adenylyltransferase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1384353_at AI028838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI028838 /DB_XREF=gi:4294406 /DB_XREF=UI-R-C0-ij-b-02-0-UI.s1 /CLONE=UI-R-C0-ij-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.23471.1 /TIER=ConsEnd /STK=0 /UG=Rn.23471 /UG_TITLE=ESTs AI028838 1384354_at BI288653 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288653 /DB_XREF=gi:14945450 /DB_XREF=UI-R-DK0-cdd-d-05-0-UI.s1 /CLONE=UI-R-DK0-cdd-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.56783.1 /TIER=ConsEnd /STK=0 /UG=Rn.56783 /UG_TITLE=ESTs, Weakly similar to SYNAPTONEMAL COMPLEX PROTEIN 3 (R.norvegicus) BI288653 X-linked lymphocyte-regulated 4A Xlr4a 293841 XM_001054068 /// XM_219738 1384355_at BG666418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666418 /DB_XREF=gi:13888340 /DB_XREF=DRACMC07 /CLONE=DRACMC07 /FEA=EST /CNT=2 /TID=Rn.70165.1 /TIER=ConsEnd /STK=0 /UG=Rn.70165 /UG_TITLE=ESTs BG666418 plexin A2 Plxna2 289392 NM_001105988 0001756 // somitogenesis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0021915 // neural tube development // not recorded /// 0021935 // granule cell precursor tangential migration // not recorded /// 0051642 // centrosome localization // not recorded /// 0060037 // pharyngeal system development // not recorded /// 0060174 // limb bud formation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0017154 // semaphorin receptor activity // not recorded 1384356_at AW141967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141967 /DB_XREF=gi:6161826 /DB_XREF=EST292082 /CLONE=RGICQ56 /FEA=EST /CNT=2 /TID=Rn.14938.2 /TIER=ConsEnd /STK=0 /UG=Rn.14938 /UG_TITLE=ESTs, Weakly similar to T26061 hypothetical protein W01F3.1a - Caenorhabditis elegans (C.elegans) AW141967 family with sequence similarity 151, member B Fam151b 499507 NM_001134748 1384357_at BG665592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665592 /DB_XREF=gi:13887514 /DB_XREF=DRACFC02 /CLONE=DRACFC02 /FEA=EST /CNT=2 /TID=Rn.74074.1 /TIER=ConsEnd /STK=0 /UG=Rn.74074 /UG_TITLE=ESTs BG665592 1384358_at BM384625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384625 /DB_XREF=gi:18184678 /DB_XREF=UI-R-DY0-ckl-b-17-0-UI.s1 /CLONE=UI-R-DY0-ckl-b-17-0-UI /FEA=EST /CNT=2 /TID=Rn.81455.1 /TIER=ConsEnd /STK=0 /UG=Rn.81455 /UG_TITLE=ESTs, Highly similar to HO2 RAT HEME OXYGENASE 2 (R.norvegicus) BM384625 Heme oxygenase (decycling) 2 Hmox2 79239 NM_024387 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0006788 // heme oxidation // traceable author statement /// 0006788 // heme oxidation // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0004392 // heme oxygenase (decyclizing) activity // inferred from direct assay /// 0004392 // heme oxygenase (decyclizing) activity // not recorded /// 0004392 // heme oxygenase (decyclizing) activity // traceable author statement /// 0004392 // heme oxygenase (decyclizing) activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0009055 // electron carrier activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384359_at BF407520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407520 /DB_XREF=gi:11395495 /DB_XREF=UI-R-BJ2-bqt-c-03-0-UI.s1 /CLONE=UI-R-BJ2-bqt-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.61061.1 /TIER=ConsEnd /STK=0 /UG=Rn.61061 /UG_TITLE=ESTs, Weakly similar to ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g; ATP synthase, H+ transporting, mitochondrial F1F0, subunit g (Homo sapiens) (H.sapiens) BF407520 1384360_at BI282303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282303 /DB_XREF=gi:14932937 /DB_XREF=UI-R-CU0s-cbz-a-02-0-UI.s1 /CLONE=UI-R-CU0s-cbz-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.14565.1 /TIER=ConsEnd /STK=0 /UG=Rn.14565 /UG_TITLE=ESTs BI282303 1384361_at BF555523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555523 /DB_XREF=gi:11665253 /DB_XREF=UI-R-A1-dp-d-02-0-UI.r1 /CLONE=UI-R-A1-dp-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.81044.1 /TIER=ConsEnd /STK=0 /UG=Rn.81044 /UG_TITLE=ESTs BF555523 mal, T-cell differentiation protein 2 Mal2 362911 NM_198786 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384362_at BF392187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392187 /DB_XREF=gi:11377044 /DB_XREF=UI-R-CA0-bff-c-02-0-UI.s1 /CLONE=UI-R-CA0-bff-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.43308.1 /TIER=ConsEnd /STK=0 /UG=Rn.43308 /UG_TITLE=ESTs BF392187 zinc finger and BTB domain containing 24 Zbtb24 365590 NM_001098667 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // non-traceable author statement /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384363_at AI070597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070597 /DB_XREF=gi:3396848 /DB_XREF=UI-R-C2-mr-g-03-0-UI.s1 /CLONE=UI-R-C2-mr-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.19797.1 /TIER=ConsEnd /STK=0 /UG=Rn.19797 /UG_TITLE=ESTs, Highly similar to YC97_HUMAN HYPOTHETICAL PROTEIN CGI-97 (H.sapiens) AI070597 Shwachman-Bodian-Diamond syndrome homolog (human) Sbds 288615 NM_001008289 0001833 // inner cell mass cell proliferation // not recorded /// 0006364 // rRNA processing // not recorded /// 0007612 // learning // not recorded /// 0030282 // bone mineralization // not recorded /// 0030595 // leukocyte chemotaxis // not recorded /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0043148 // mitotic spindle stabilization // not recorded /// 0045727 // positive regulation of translation // inferred from electronic annotation /// 0048539 // bone marrow development // not recorded 0000922 // spindle pole // not recorded /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // not recorded /// 0019843 // rRNA binding // not recorded 1384364_at AW521356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521356 /DB_XREF=gi:7163734 /DB_XREF=UI-R-BO0-agl-e-10-0-UI.s1 /CLONE=UI-R-BO0-agl-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.45165.1 /TIER=ConsEnd /STK=0 /UG=Rn.45165 /UG_TITLE=ESTs, Highly similar to T50613 hypothetical protein DKFZp547N213.1 (H.sapiens) AW521356 F-box protein 4 Fbxo4 310363 NM_001107672 0000209 // protein polyubiquitination // not recorded /// 0000723 // telomere maintenance // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0031398 // positive regulation of protein ubiquitination // not recorded 0000151 // ubiquitin ligase complex // not recorded /// 0019005 // SCF ubiquitin ligase complex // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1384365_at BF557607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557607 /DB_XREF=gi:11667337 /DB_XREF=UI-R-E1-gj-b-01-0-UI.r1 /CLONE=UI-R-E1-gj-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.76229.1 /TIER=ConsEnd /STK=0 /UG=Rn.76229 /UG_TITLE=ESTs, Weakly similar to PECI_MOUSE PEROXISOMAL 3,2-TRANS-ENOYL-COA ISOMERASE (DODECENOYL-COA DELTA-ISOMERASE) (D3,D2-ENOYL-COA ISOMERASE) (M.musculus) BF557607 chromodomain protein, Y-like Cdyl 361237 NM_001014145 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003682 // chromatin binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1384366_at BI283477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283477 /DB_XREF=gi:14935258 /DB_XREF=UI-R-DE0-cab-g-06-0-UI.s1 /CLONE=UI-R-DE0-cab-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.11556.2 /TIER=ConsEnd /STK=0 /UG=Rn.11556 /UG_TITLE=ESTs BI283477 1384367_at AI715140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715140 /DB_XREF=gi:5032393 /DB_XREF=UI-R-Y0-abl-f-11-0-UI.s1 /CLONE=UI-R-Y0-abl-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.72468.1 /TIER=ConsEnd /STK=0 /UG=Rn.72468 /UG_TITLE=ESTs, Highly similar to I57019 H3 histone - rat (R.norvegicus) AI715140 similar to histone protein Hist2h3c1 RGD1563516 690148 XR_006811 1384368_at AA900084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900084 /DB_XREF=gi:4232573 /DB_XREF=UI-R-E0-da-h-07-0-UI.s1 /CLONE=UI-R-E0-da-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.21448.1 /TIER=ConsEnd /STK=0 /UG=Rn.21448 /UG_TITLE=ESTs AA900084 solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16 Slc25a16 361836 NM_001100860 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1384369_at BF554611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554611 /DB_XREF=gi:11664341 /DB_XREF=UI-R-C0-ji-e-01-0-UI.r1 /CLONE=UI-R-C0-ji-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.80060.1 /TIER=ConsEnd /STK=0 /UG=Rn.80060 /UG_TITLE=ESTs BF554611 transmembrane protein 67 Tmem67 313067 NM_001107916 0010826 // negative regulation of centrosome duplication // inferred from electronic annotation /// 0010826 // negative regulation of centrosome duplication // not recorded /// 0030433 // ER-associated protein catabolic process // inferred from electronic annotation /// 0030433 // ER-associated protein catabolic process // not recorded /// 0042384 // cilium assembly // inferred from mutant phenotype /// 0042384 // cilium assembly // not recorded /// 0042384 // cilium assembly // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0005932 // microtubule basal body // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // not recorded /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0060170 // cilium membrane // inferred from electronic annotation /// 0060170 // cilium membrane // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // not recorded 1384370_at BF542664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542664 /DB_XREF=gi:11633771 /DB_XREF=UI-R-C3-sm-d-06-0-UI.r1 /CLONE=UI-R-C3-sm-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.41761.2 /TIER=ConsEnd /STK=0 /UG=Rn.41761 /UG_TITLE=ESTs, Highly similar to FTHC_MOUSE 5-formyltetrahydrofolate cyclo-ligase (5,10-methenyl-tetrahydrofolate synthetase) (Methenyl-THF synthetase) (MTHFS) (M.musculus) BF542664 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) Mthfs 300886 NM_001009349 0006915 // apoptosis // inferred by curator /// 0006916 // anti-apoptosis // non-traceable author statement /// 0009396 // folic acid and derivative biosynthetic process // inferred from electronic annotation /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0046653 // tetrahydrofolate metabolic process // not recorded 0005739 // mitochondrion // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // not recorded 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030272 // 5-formyltetrahydrofolate cyclo-ligase activity // inferred from electronic annotation /// 0030272 // 5-formyltetrahydrofolate cyclo-ligase activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0051400 // BH domain binding // inferred from physical interaction 1384371_at AW921429 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921429 /DB_XREF=gi:8087253 /DB_XREF=EST352733 /CLONE=RGIHT74 /FEA=EST /CNT=2 /TID=Rn.42057.2 /TIER=ConsEnd /STK=0 /UG=Rn.42057 /UG_TITLE=ESTs, Highly similar to TEF5 MOUSE TRANSCRIPTIONAL ENHANCER FACTOR TEF-5 (M.musculus) AW921429 TEA domain family member 3 Tead3 294299 NM_001098216 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0035329 // hippo signaling cascade // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation 1384372_at BF545278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545278 /DB_XREF=gi:11636385 /DB_XREF=UI-R-C0-jq-g-08-0-UI.r1 /CLONE=UI-R-C0-jq-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.63861.1 /TIER=ConsEnd /STK=0 /UG=Rn.63861 /UG_TITLE=ESTs BF545278 1384373_at BF397124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397124 /DB_XREF=gi:11382107 /DB_XREF=UI-R-BS2-bei-e-02-0-UI.s1 /CLONE=UI-R-BS2-bei-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.58758.1 /TIER=ConsEnd /STK=0 /UG=Rn.58758 /UG_TITLE=ESTs BF397124 regulatory factor X, 7 Rfx7 315804 NM_001127490 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1384374_at BF523755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523755 /DB_XREF=gi:11631722 /DB_XREF=UI-R-Y0-vc-f-08-0-UI.r1 /CLONE=UI-R-Y0-vc-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.72439.1 /TIER=ConsEnd /STK=0 /UG=Rn.72439 /UG_TITLE=ESTs BF523755 1384375_at BE100151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100151 /DB_XREF=gi:8492039 /DB_XREF=UI-R-BJ1-ats-c-09-0-UI.s1 /CLONE=UI-R-BJ1-ats-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.20760.1 /TIER=ConsEnd /STK=0 /UG=Rn.20760 /UG_TITLE=ESTs BE100151 1384376_at AA818641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818641 /DB_XREF=gi:4200452 /DB_XREF=UI-R-A0-az-f-02-0-UI.s1 /CLONE=UI-R-A0-az-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.25329.1 /TIER=ConsEnd /STK=0 /UG=Rn.25329 /UG_TITLE=ESTs, Weakly similar to DNAJ protein like (Caenorhabditis elegans) (C.elegans) AA818641 DnaJ (Hsp40) homolog, subfamily B, member 14 Dnajb14 499716 NM_001109193 /// XM_001078145 /// XM_002726044 /// XM_002729123 /// XM_575045 0006457 // protein folding // inferred from electronic annotation 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1384377_at BI284877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284877 /DB_XREF=gi:14937957 /DB_XREF=UI-R-CX0s-cct-c-11-0-UI.s1 /CLONE=UI-R-CX0s-cct-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.78527.1 /TIER=ConsEnd /STK=0 /UG=Rn.78527 /UG_TITLE=ESTs, Weakly similar to A57514 RNA helicase HEL117 - rat (R.norvegicus) BI284877 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 Ddx28 364995 NM_001108898 0005739 // mitochondrion // not recorded /// 0042645 // mitochondrial nucleoid // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1384378_at BI293046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293046 /DB_XREF=gi:14954165 /DB_XREF=UI-R-DK0-cdj-f-10-0-UI.s1 /CLONE=UI-R-DK0-cdj-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.79519.1 /TIER=ConsEnd /STK=0 /UG=Rn.79519 /UG_TITLE=ESTs BI293046 HCR (a-helix coiled-coil rod homolog) Hcr 406196 NM_001002822 0030154 // cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 1384379_at BG668700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668700 /DB_XREF=gi:13890622 /DB_XREF=DRNBMD10 /CLONE=DRNBMD10 /FEA=EST /CNT=2 /TID=Rn.18731.1 /TIER=ConsEnd /STK=0 /UG=Rn.18731 /UG_TITLE=ESTs BG668700 1384380_at AI535316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535316 /DB_XREF=gi:4449451 /DB_XREF=UI-R-C3-sw-c-12-0-UI.s1 /CLONE=UI-R-C3-sw-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.25516.1 /TIER=ConsEnd /STK=0 /UG=Rn.25516 /UG_TITLE=ESTs AI535316 1384381_at BF284523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284523 /DB_XREF=gi:11215593 /DB_XREF=EST449114 /CLONE=RGIER58 /FEA=EST /CNT=2 /TID=Rn.55270.1 /TIER=ConsEnd /STK=0 /UG=Rn.55270 /UG_TITLE=ESTs, Highly similar to A54774 ATP binding cassette transporter ABC1 - human (M.musculus) BF284523 ATP-binding cassette, sub-family A (ABC1), member 1 Abca1 313210 NM_178095 0002790 // peptide secretion // not recorded /// 0002790 // peptide secretion // inferred from electronic annotation /// 0006497 // protein lipidation // not recorded /// 0006497 // protein lipidation // inferred from electronic annotation /// 0006820 // anion transport // not recorded /// 0006911 // phagocytosis, engulfment // not recorded /// 0006911 // phagocytosis, engulfment // inferred from electronic annotation /// 0007040 // lysosome organization // not recorded /// 0007040 // lysosome organization // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from expression pattern /// 0008203 // cholesterol metabolic process // not recorded /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0010875 // positive regulation of cholesterol efflux // not recorded /// 0010875 // positive regulation of cholesterol efflux // inferred from electronic annotation /// 0015914 // phospholipid transport // inferred from direct assay /// 0015914 // phospholipid transport // traceable author statement /// 0016197 // endosome transport // not recorded /// 0016197 // endosome transport // inferred from electronic annotation /// 0030301 // cholesterol transport // inferred from direct assay /// 0030301 // cholesterol transport // inferred from mutant phenotype /// 0030819 // positive regulation of cAMP biosynthetic process // not recorded /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0032367 // intracellular cholesterol transport // not recorded /// 0032367 // intracellular cholesterol transport // inferred from electronic annotation /// 0032488 // Cdc42 protein signal transduction // not recorded /// 0032488 // Cdc42 protein signal transduction // inferred from electronic annotation /// 0033344 // cholesterol efflux // not recorded /// 0033344 // cholesterol efflux // inferred from electronic annotation /// 0033700 // phospholipid efflux // not recorded /// 0033700 // phospholipid efflux // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0034380 // high-density lipoprotein particle assembly // not recorded /// 0034380 // high-density lipoprotein particle assembly // inferred from electronic annotation /// 0042157 // lipoprotein metabolic process // not recorded /// 0042157 // lipoprotein metabolic process // inferred from electronic annotation /// 0042158 // lipoprotein biosynthetic process // inferred from mutant phenotype /// 0042158 // lipoprotein biosynthetic process // not recorded /// 0042158 // lipoprotein biosynthetic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042632 // cholesterol homeostasis // not recorded /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0043691 // reverse cholesterol transport // not recorded /// 0043691 // reverse cholesterol transport // inferred from electronic annotation /// 0045332 // phospholipid translocation // not recorded /// 0045332 // phospholipid translocation // inferred from electronic annotation /// 0050702 // interleukin-1 beta secretion // not recorded /// 0050702 // interleukin-1 beta secretion // inferred from electronic annotation /// 0055091 // phospholipid homeostasis // not recorded /// 0055091 // phospholipid homeostasis // inferred from electronic annotation /// 0055099 // response to high density lipoprotein stimulus // not recorded /// 0060155 // platelet dense granule organization // not recorded /// 0060155 // platelet dense granule organization // inferred from electronic annotation /// 0071222 // cellular response to lipopolysaccharide // not recorded /// 0071300 // cellular response to retinoic acid // not recorded 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0030139 // endocytic vesicle // not recorded /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0034364 // high-density lipoprotein particle // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from electronic annotation /// 0045335 // phagocytic vesicle // not recorded /// 0045335 // phagocytic vesicle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005548 // phospholipid transporter activity // not recorded /// 0005548 // phospholipid transporter activity // inferred from electronic annotation /// 0008035 // high-density lipoprotein binding // inferred from direct assay /// 0008509 // anion transmembrane transporter activity // not recorded /// 0008509 // anion transmembrane transporter activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0017127 // cholesterol transporter activity // not recorded /// 0017127 // cholesterol transporter activity // inferred from electronic annotation /// 0030349 // syntaxin-13 binding // not recorded /// 0030349 // syntaxin-13 binding // inferred from electronic annotation /// 0031267 // small GTPase binding // not recorded /// 0031267 // small GTPase binding // inferred from electronic annotation /// 0034185 // apolipoprotein binding // not recorded /// 0034185 // apolipoprotein binding // inferred from electronic annotation /// 0034186 // apolipoprotein A-I binding // not recorded /// 0034186 // apolipoprotein A-I binding // inferred from electronic annotation /// 0034188 // apolipoprotein A-I receptor activity // not recorded /// 0034188 // apolipoprotein A-I receptor activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from direct assay /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // traceable author statement /// 0070653 // high-density lipoprotein receptor binding // inferred from direct assay 1384382_at BF393066 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393066 /DB_XREF=gi:11377926 /DB_XREF=UI-R-CA0-bgu-a-03-0-UI.s1 /CLONE=UI-R-CA0-bgu-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.62819.1 /TIER=ConsEnd /STK=0 /UG=Rn.62819 /UG_TITLE=ESTs, Weakly similar to O-sialoglycoprotein endopeptidase (Caenorhabditis elegans) (C.elegans) BF393066 O-sialoglycoprotein endopeptidase-like 1 Osgepl1 314548 NM_001024787 0006508 // proteolysis // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384383_at BF557230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557230 /DB_XREF=gi:11666960 /DB_XREF=UI-R-C0-gt-b-06-0-UI.r1 /CLONE=UI-R-C0-gt-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.64031.1 /TIER=ConsEnd /STK=0 /UG=Rn.64031 /UG_TITLE=ESTs, Weakly similar to R07E3.5.p (Caenorhabditis elegans) (C.elegans) BF557230 1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta) Agpat6 290843 NM_001047849 0002071 // glandular epithelial cell maturation // not recorded /// 0002071 // glandular epithelial cell maturation // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // not recorded /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006637 // acyl-CoA metabolic process // not recorded /// 0006637 // acyl-CoA metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // not recorded /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006656 // phosphatidylcholine biosynthetic process // not recorded /// 0006656 // phosphatidylcholine biosynthetic process // inferred from electronic annotation /// 0007595 // lactation // not recorded /// 0007595 // lactation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0019432 // triglyceride biosynthetic process // not recorded /// 0019432 // triglyceride biosynthetic process // inferred from electronic annotation /// 0030879 // mammary gland development // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0046339 // diacylglycerol metabolic process // not recorded /// 0046339 // diacylglycerol metabolic process // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // not recorded /// 0004366 // glycerol-3-phosphate O-acyltransferase activity // not recorded /// 0004366 // glycerol-3-phosphate O-acyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1384384_at BF543289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543289 /DB_XREF=gi:11634396 /DB_XREF=UI-R-Y0-abd-c-01-0-UI.r1 /CLONE=UI-R-Y0-abd-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.81277.1 /TIER=ConsEnd /STK=0 /UG=Rn.81277 /UG_TITLE=ESTs BF543289 similar to KIAA0528 protein RGD1304592 362461 NM_001134581 0005515 // protein binding // not recorded 1384385_at AI060176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060176 /DB_XREF=gi:3333953 /DB_XREF=UI-R-C1-li-d-01-0-UI.s1 /CLONE=UI-R-C1-li-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.19383.1 /TIER=ConsEnd /STK=0 /UG=Rn.19383 /UG_TITLE=ESTs AI060176 1384386_at BF287084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287084 /DB_XREF=gi:11218154 /DB_XREF=EST451675 /CLONE=RGIFY88 /FEA=EST /CNT=2 /TID=Rn.56140.1 /TIER=ConsEnd /STK=0 /UG=Rn.56140 /UG_TITLE=ESTs, Highly similar to A56039 GTPase-activating protein Gap1(m) - rat (R.norvegicus) BF287084 RAS p21 protein activator 2 Rasa2 25597 NM_001105724 0007165 // signal transduction // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005099 // Ras GTPase activator activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1384387_at BE110061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110061 /DB_XREF=gi:8502166 /DB_XREF=UI-R-CA0-axj-e-11-0-UI.s1 /CLONE=UI-R-CA0-axj-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.17517.1 /TIER=ConsEnd /STK=0 /UG=Rn.17517 /UG_TITLE=ESTs BE110061 1384388_at H34273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H34273 /DB_XREF=gi:979690 /DB_XREF=EST111036 /CLONE=RPNBQ24 /FEA=EST /CNT=2 /TID=Rn.79210.1 /TIER=ConsEnd /STK=0 /UG=Rn.79210 /UG_TITLE=ESTs H34273 transmembrane emp24 protein transport domain containing 9 Tmed9 361207 NM_001009703 0006810 // transport // inferred from electronic annotation 0005793 // ER-Golgi intermediate compartment // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1384389_at AI112040 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112040 /DB_XREF=gi:3511989 /DB_XREF=UI-R-Y0-mh-a-03-0-UI.s1 /CLONE=UI-R-Y0-mh-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.26706.1 /TIER=ConsEnd /STK=0 /UG=Rn.26706 /UG_TITLE=ESTs, Weakly similar to GPV RAT PLATELET GLYCOPROTEIN V PRECURSOR (R.norvegicus) AI112040 1384390_at BI278808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278808 /DB_XREF=gi:14926019 /DB_XREF=UI-R-CX0-bwx-b-06-0-UI.s1 /CLONE=UI-R-CX0-bwx-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.77849.1 /TIER=ConsEnd /STK=0 /UG=Rn.77849 /UG_TITLE=ESTs, Highly similar to jumonji protein (Mus musculus) (M.musculus) BI278808 similar to jumonji protein LOC681740 681740 XM_001056897 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1384391_at BE096510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096510 /DB_XREF=gi:8487441 /DB_XREF=UI-R-BU0-aph-a-04-0-UI.s1 /CLONE=UI-R-BU0-aph-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.11167.1 /TIER=ConsEnd /STK=0 /UG=Rn.11167 /UG_TITLE=ESTs, Weakly similar to T24832 hypothetical protein T11F9.11 - Caenorhabditis elegans (C.elegans) BE096510 retinol dehydrogenase 10 (all-trans) Rdh10 353252 NM_181478 0001656 // metanephros development // inferred from electronic annotation /// 0001656 // metanephros development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0002138 // retinoic acid biosynthetic process // inferred from electronic annotation /// 0002138 // retinoic acid biosynthetic process // not recorded /// 0007601 // visual perception // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008406 // gonad development // inferred from electronic annotation /// 0008406 // gonad development // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0014032 // neural crest cell development // inferred from electronic annotation /// 0014032 // neural crest cell development // not recorded /// 0031076 // embryonic camera-type eye development // inferred from electronic annotation /// 0031076 // embryonic camera-type eye development // not recorded /// 0035115 // embryonic forelimb morphogenesis // inferred from electronic annotation /// 0035115 // embryonic forelimb morphogenesis // not recorded /// 0042572 // retinol metabolic process // inferred from electronic annotation /// 0042572 // retinol metabolic process // not recorded /// 0042574 // retinal metabolic process // inferred from electronic annotation /// 0042574 // retinal metabolic process // not recorded /// 0043583 // ear development // inferred from electronic annotation /// 0043583 // ear development // not recorded /// 0043584 // nose development // inferred from electronic annotation /// 0043584 // nose development // not recorded /// 0048568 // embryonic organ development // not recorded /// 0048568 // embryonic organ development // inferred from electronic annotation /// 0048703 // embryonic viscerocranium morphogenesis // inferred from electronic annotation /// 0048703 // embryonic viscerocranium morphogenesis // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060431 // primary lung bud formation // inferred from electronic annotation /// 0060431 // primary lung bud formation // not recorded /// 0060449 // bud elongation involved in lung branching // inferred from electronic annotation /// 0060449 // bud elongation involved in lung branching // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004745 // retinol dehydrogenase activity // inferred from electronic annotation /// 0004745 // retinol dehydrogenase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1384392_at BF397093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397093 /DB_XREF=gi:11382076 /DB_XREF=UI-R-BS2-bei-b-04-0-UI.s1 /CLONE=UI-R-BS2-bei-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.9325.1 /TIER=ConsEnd /STK=0 /UG=Rn.9325 /UG_TITLE=ESTs BF397093 cytochrome P450, family 26, subfamily b, polypeptide 1 Cyp26b1 312495 NM_181087 0001709 // cell fate determination // inferred from electronic annotation /// 0001709 // cell fate determination // not recorded /// 0007140 // male meiosis // inferred from electronic annotation /// 0007140 // male meiosis // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0009954 // proximal/distal pattern formation // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0034653 // retinoic acid catabolic process // inferred from electronic annotation /// 0034653 // retinoic acid catabolic process // not recorded /// 0048384 // retinoic acid receptor signaling pathway // inferred from electronic annotation /// 0048384 // retinoic acid receptor signaling pathway // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded 0001972 // retinoic acid binding // inferred from electronic annotation /// 0001972 // retinoic acid binding // not recorded /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008401 // retinoic acid 4-hydroxylase activity // inferred from electronic annotation /// 0008401 // retinoic acid 4-hydroxylase activity // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384393_at BE120370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120370 /DB_XREF=gi:8512475 /DB_XREF=UI-R-CA0-baq-f-06-0-UI.s1 /CLONE=UI-R-CA0-baq-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.53543.1 /TIER=ConsEnd /STK=0 /UG=Rn.53543 /UG_TITLE=ESTs BE120370 1384394_at BF548081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548081 /DB_XREF=gi:11639188 /DB_XREF=UI-R-A0-ae-b-02-0-UI.r1 /CLONE=UI-R-A0-ae-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.64073.1 /TIER=ConsEnd /STK=0 /UG=Rn.64073 /UG_TITLE=ESTs, Weakly similar to T29104 Tbc1 protein - mouse (M.musculus) BF548081 rCG57228-like LOC100360066 100360066 XM_002724925 /// XM_002728062 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1384395_at BE114359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114359 /DB_XREF=gi:8506464 /DB_XREF=UI-R-CA0-axp-c-11-0-UI.s1 /CLONE=UI-R-CA0-axp-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.52356.1 /TIER=ConsEnd /STK=0 /UG=Rn.52356 /UG_TITLE=ESTs, Moderately similar to L-LACTATE DEHYDROGENASE M CHAIN (R.norvegicus) BE114359 lactate dehydrogenase A-like 6B Ldhal6b 369018 NM_183334 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006096 // glycolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0044262 // cellular carbohydrate metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004459 // L-lactate dehydrogenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation 1384396_at AI144852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144852 /DB_XREF=gi:3666651 /DB_XREF=UI-R-BT0-pm-f-04-0-UI.s1 /CLONE=UI-R-BT0-pm-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.23813.1 /TIER=ConsEnd /STK=0 /UG=Rn.23813 /UG_TITLE=ESTs, Moderately similar to CDKA_HUMAN CELL DIVISION PROTEIN KINASE 10 (H.sapiens) AI144852 1384397_x_at AI072527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072527 /DB_XREF=gi:3398721 /DB_XREF=UI-R-C2-ni-c-10-0-UI.s1 /CLONE=UI-R-C2-ni-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.14560.2 /TIER=ConsEnd /STK=0 /UG=Rn.14560 /UG_TITLE=ESTs AI072527 crumbs homolog 3 (Drosophila) Crb3 301112 NM_001025661 1384398_at BM383680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383680 /DB_XREF=gi:18183733 /DB_XREF=UI-R-DM1-ckb-a-09-0-UI.s1 /CLONE=UI-R-DM1-ckb-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.49740.1 /TIER=ConsEnd /STK=0 /UG=Rn.49740 /UG_TITLE=ESTs BM383680 1384399_at AW526620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526620 /DB_XREF=gi:7169034 /DB_XREF=UI-R-BO1-ajd-b-04-0-UI.s1 /CLONE=UI-R-BO1-ajd-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.46262.1 /TIER=ConsEnd /STK=0 /UG=Rn.46262 /UG_TITLE=ESTs AW526620 ankyrin repeat domain 50 Ankrd50 294988 NM_001191606 /// XM_001069855 /// XM_215553 1384400_at BM389421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389421 /DB_XREF=gi:18189474 /DB_XREF=UI-R-CN1-cjk-o-03-0-UI.s1 /CLONE=UI-R-CN1-cjk-o-03-0-UI /FEA=EST /CNT=2 /TID=Rn.82236.1 /TIER=ConsEnd /STK=0 /UG=Rn.82236 /UG_TITLE=ESTs BM389421 Pde4c protein-like /// phosphodiesterase 4C, cAMP-specific (phosphodiesterase E1 dunce homolog, Drosophila) LOC100360908 /// Pde4c 100360908 /// 290646 XM_001070301 /// XM_002728386 /// XM_214325 0006198 // cAMP catabolic process // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0046676 // negative regulation of insulin secretion // inferred from mutant phenotype 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from mutant phenotype /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // not recorded /// 0008144 // drug binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384401_at AI059296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059296 /DB_XREF=gi:3333073 /DB_XREF=UI-R-C1-lf-a-04-0-UI.s1 /CLONE=UI-R-C1-lf-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.19125.1 /TIER=ConsEnd /STK=0 /UG=Rn.19125 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) AI059296 1384402_a_at H31119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31119 /DB_XREF=gi:976541 /DB_XREF=EST104840 /CLONE=RPCAB82 /FEA=EST /CNT=2 /TID=Rn.3917.2 /TIER=ConsEnd /STK=0 /UG=Rn.3917 /UG_TITLE=ESTs H31119 DDB1 and CUL4 associated factor 6 Dcaf6 289181 XM_001071288 /// XM_002724885 /// XM_002728021 /// XM_213926 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0080008 // CUL4 RING ubiquitin ligase complex // not recorded 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded 1384404_at BF408140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408140 /DB_XREF=gi:11396115 /DB_XREF=UI-R-BJ2-bra-b-01-0-UI.s1 /CLONE=UI-R-BJ2-bra-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.14717.1 /TIER=ConsEnd /STK=0 /UG=Rn.14717 /UG_TITLE=ESTs, Highly similar to T50839 U4U6 small nuclear ribonucleoprotein hPrp3 (H.sapiens) BF408140 PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae) Prpf3 361995 NM_001108559 0006397 // mRNA processing // inferred from electronic annotation 0015030 // Cajal body // not recorded 0005515 // protein binding // not recorded 1384405_at BI283128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283128 /DB_XREF=gi:14934566 /DB_XREF=UI-R-CU0s-cca-c-11-0-UI.s1 /CLONE=UI-R-CU0s-cca-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.24557.1 /TIER=ConsEnd /STK=0 /UG=Rn.24557 /UG_TITLE=ESTs, Moderately similar to SEC_HUMAN SEC PROTEI (H.sapiens) BI283128 hypothetical protein LOC682360 LOC682360 682360 XM_001061186 1384406_at AW527186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527186 /DB_XREF=gi:7169600 /DB_XREF=UI-R-BO1-ajm-e-03-0-UI.s1 /CLONE=UI-R-BO1-ajm-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.34044.1 /TIER=ConsEnd /STK=0 /UG=Rn.34044 /UG_TITLE=ESTs AW527186 Similar to C-C chemokine receptor type 11 (C-C CKR-11) (CC-CKR-11) (CCR-11) (Chemokine receptor-like 1) (CCRL1) (CCX CKR) LOC685243 685243 XM_001061617 /// XM_002727133 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1384407_at AI602856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602856 /DB_XREF=gi:4612017 /DB_XREF=UI-R-AE0-xm-e-06-0-UI.s1 /CLONE=UI-R-AE0-xm-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.40233.1 /TIER=ConsEnd /STK=0 /UG=Rn.40233 /UG_TITLE=ESTs AI602856 NmrA-like family domain containing 1 Nmral1 287063 NM_001191588 /// XM_001079214 /// XM_213217 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1384408_at BM386061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386061 /DB_XREF=gi:18186114 /DB_XREF=UI-R-DN1-ckf-p-04-0-UI.s1 /CLONE=UI-R-DN1-ckf-p-04-0-UI /FEA=EST /CNT=2 /TID=Rn.81695.1 /TIER=ConsEnd /STK=0 /UG=Rn.81695 /UG_TITLE=ESTs BM386061 1384409_at AA963930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963930 /DB_XREF=gi:4278335 /DB_XREF=UI-R-E1-ga-d-02-0-UI.s1 /CLONE=UI-R-E1-ga-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.11479.1 /TIER=ConsEnd /STK=0 /UG=Rn.11479 /UG_TITLE=ESTs AA963930 1384410_at AA964404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964404 /DB_XREF=gi:4279278 /DB_XREF=UI-R-E1-gp-d-06-0-UI.s1 /CLONE=UI-R-E1-gp-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.11801.2 /TIER=ConsEnd /STK=0 /UG=Rn.11801 /UG_TITLE=ESTs AA964404 1384411_at AA962968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA962968 /DB_XREF=gi:4277939 /DB_XREF=UI-R-E1-fx-g-06-0-UI.s1 /CLONE=UI-R-E1-fx-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.12168.1 /TIER=ConsEnd /STK=0 /UG=Rn.12168 /UG_TITLE=ESTs AA962968 hypothetical LOC296884 LOC296884 296884 NM_001177442 /// XM_002729282 /// XM_002729283 1384412_at AA997238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997238 /DB_XREF=gi:4282593 /DB_XREF=UI-R-C0-hy-a-01-0-UI.s1 /CLONE=UI-R-C0-hy-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.12659.1 /TIER=ConsEnd /STK=0 /UG=Rn.12659 /UG_TITLE=ESTs AA997238 EF-hand calcium binding domain 2 Efcab2 289280 NM_001105977 0005509 // calcium ion binding // inferred from electronic annotation 1384413_at AA900068 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900068 /DB_XREF=gi:4232557 /DB_XREF=UI-R-E0-da-f-10-0-UI.s1 /CLONE=UI-R-E0-da-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.15016.1 /TIER=ConsEnd /STK=0 /UG=Rn.15016 /UG_TITLE=ESTs AA900068 Solute carrier family 35, member A5 Slc35a5 498081 NM_001191927 /// XM_001066912 /// XM_573283 0000139 // Golgi membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005338 // nucleotide-sugar transmembrane transporter activity // inferred from electronic annotation /// 0005351 // sugar:hydrogen symporter activity // inferred from electronic annotation 1384414_at AI044483 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044483 /DB_XREF=gi:3291344 /DB_XREF=UI-R-C1-jw-d-11-0-UI.s1 /CLONE=UI-R-C1-jw-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.15920.1 /TIER=ConsEnd /STK=0 /UG=Rn.15920 /UG_TITLE=ESTs AI044483 1384415_at AI058292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058292 /DB_XREF=gi:3332069 /DB_XREF=UI-R-C1-kl-c-08-0-UI.s1 /CLONE=UI-R-C1-kl-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.17732.1 /TIER=ConsEnd /STK=0 /UG=Rn.17732 /UG_TITLE=ESTs AI058292 SRY (sex determining region Y)-box 7 Sox7 290317 NM_001106045 0001706 // endoderm formation // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0043280 // positive regulation of caspase activity // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0060828 // regulation of canonical Wnt receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0010843 // promoter binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // not recorded 1384416_at BE115686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115686 /DB_XREF=gi:8507791 /DB_XREF=UI-R-BJ1-avy-g-05-0-UI.s1 /CLONE=UI-R-BJ1-avy-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.31912.2 /TIER=ConsEnd /STK=0 /UG=Rn.31912 /UG_TITLE=ESTs BE115686 ring finger protein 168 Rnf168 690043 NM_001127597 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // inferred from sequence or structural similarity /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010212 // response to ionizing radiation // inferred from sequence or structural similarity /// 0010212 // response to ionizing radiation // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0045739 // positive regulation of DNA repair // inferred from sequence or structural similarity /// 0045739 // positive regulation of DNA repair // inferred from electronic annotation /// 0070535 // histone H2A K63-linked ubiquitination // inferred from sequence or structural similarity /// 0070535 // histone H2A K63-linked ubiquitination // inferred from electronic annotation 0000151 // ubiquitin ligase complex // inferred from sequence or structural similarity /// 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0042393 // histone binding // inferred from sequence or structural similarity /// 0042393 // histone binding // inferred from electronic annotation /// 0043130 // ubiquitin binding // inferred from sequence or structural similarity /// 0043130 // ubiquitin binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384417_at AA998783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998783 /DB_XREF=gi:4292248 /DB_XREF=UI-R-C0-im-d-11-0-UI.s1 /CLONE=UI-R-C0-im-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.33157.1 /TIER=ConsEnd /STK=0 /UG=Rn.33157 /UG_TITLE=ESTs, Highly similar to APC4 RAT APOLIPOPROTEIN C-IV PRECURSOR (R.norvegicus) AA998783 apolipoprotein C-IV Apoc4 680551 NM_001109419 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0010890 // positive regulation of sequestering of triglyceride // inferred from electronic annotation /// 0010890 // positive regulation of sequestering of triglyceride // not recorded /// 0070328 // triglyceride homeostasis // inferred from electronic annotation /// 0070328 // triglyceride homeostasis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0034361 // very-low-density lipoprotein particle // inferred from electronic annotation /// 0034361 // very-low-density lipoprotein particle // not recorded /// 0034364 // high-density lipoprotein particle // inferred from electronic annotation /// 0034364 // high-density lipoprotein particle // not recorded 1384418_at AI556531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556531 /DB_XREF=gi:4488894 /DB_XREF=UI-R-C2p-rl-f-06-0-UI.s1 /CLONE=UI-R-C2p-rl-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.38166.1 /TIER=ConsEnd /STK=0 /UG=Rn.38166 /UG_TITLE=ESTs, Weakly similar to transforming protein (M.musculus) AI556531 similar to Rho guanine nucleotide exchange factor (GEF) 10-like LOC684811 684811 XR_085844 1384419_at AA944588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944588 /DB_XREF=gi:3104504 /DB_XREF=EST200087 /CLONE=REMAL46 /FEA=EST /CNT=2 /TID=Rn.22407.3 /TIER=ConsEnd /STK=0 /UG=Rn.22407 /UG_TITLE=ESTs AA944588 1384420_at AA859937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859937 /DB_XREF=gi:4230472 /DB_XREF=UI-R-E0-cg-d-07-0-UI.s1 /CLONE=UI-R-E0-cg-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.40193.2 /TIER=ConsEnd /STK=0 /UG=Rn.40193 /UG_TITLE=ESTs AA859937 1384421_at AA963649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963649 /DB_XREF=gi:4278552 /DB_XREF=UI-R-E1-gg-e-10-0-UI.s1 /CLONE=UI-R-E1-gg-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.42438.1 /TIER=ConsEnd /STK=0 /UG=Rn.42438 /UG_TITLE=ESTs, Weakly similar to Y144_HUMAN HYPOTHETICAL PROTEIN KIAA0144 (H.sapiens) AA963649 ubiquitin-associated protein 2 Ubap2 313169 NM_001107928 1384422_at AI045140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045140 /DB_XREF=gi:3291959 /DB_XREF=UI-R-C1-kg-h-04-0-UI.s1 /CLONE=UI-R-C1-kg-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.15907.1 /TIER=ConsEnd /STK=0 /UG=Rn.15907 /UG_TITLE=ESTs AI045140 1384423_at AW140661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW140661 /DB_XREF=gi:6160415 /DB_XREF=EST290656 /CLONE=RGIAO28 /FEA=EST /CNT=2 /TID=Rn.22996.2 /TIER=ConsEnd /STK=0 /UG=Rn.22996 /UG_TITLE=ESTs, Highly similar to JC2436 5-nucleotidase (H.sapiens) AW140661 5'-nucleotidase, cytosolic II LOC100363253 100363253 XM_002728891 0046872 // metal ion binding // inferred from electronic annotation 1384425_at BI297061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297061 /DB_XREF=gi:14962100 /DB_XREF=UI-R-DK0-cgk-g-09-0-UI.s1 /CLONE=UI-R-DK0-cgk-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.32787.1 /TIER=ConsEnd /STK=0 /UG=Rn.32787 /UG_TITLE=ESTs BI297061 similar to C21ORF7 LOC304131 304131 NM_001013979 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384427_at BI296301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296301 /DB_XREF=gi:14960608 /DB_XREF=UI-R-DK0-cey-g-06-0-UI.s1 /CLONE=UI-R-DK0-cey-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.44156.1 /TIER=ConsEnd /STK=0 /UG=Rn.44156 /UG_TITLE=ESTs, Highly similar to A42772 mdm2 protein - rat (R.norvegicus) BI296301 Mdm2 p53 binding protein homolog (mouse) Mdm2 314856 NM_001108099 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006461 // protein complex assembly // not recorded /// 0007089 // traversing start control point of mitotic cell cycle // not recorded /// 0009636 // response to toxin // inferred from expression pattern /// 0009743 // response to carbohydrate stimulus // inferred from expression pattern /// 0010039 // response to iron ion // inferred from expression pattern /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0010629 // negative regulation of gene expression // inferred from mutant phenotype /// 0010955 // negative regulation of protein maturation by peptide bond cleavage // inferred from mutant phenotype /// 0016567 // protein ubiquitination // inferred from mutant phenotype /// 0016567 // protein ubiquitination // not recorded /// 0030163 // protein catabolic process // not recorded /// 0031648 // protein destabilization // not recorded /// 0032026 // response to magnesium ion // inferred from expression pattern /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0034504 // protein localization in nucleus // not recorded /// 0042176 // regulation of protein catabolic process // not recorded /// 0042220 // response to cocaine // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0043154 // negative regulation of caspase activity // inferred from mutant phenotype /// 0043278 // response to morphine // inferred from expression pattern /// 0043518 // negative regulation of DNA damage response, signal transduction by p53 class mediator // not recorded /// 0045184 // establishment of protein localization // not recorded /// 0045472 // response to ether // inferred from expression pattern /// 0045787 // positive regulation of cell cycle // not recorded /// 0045931 // positive regulation of mitotic cell cycle // not recorded /// 0046827 // positive regulation of protein export from nucleus // inferred from mutant phenotype /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0070301 // cellular response to hydrogen peroxide // inferred from expression pattern /// 0071157 // negative regulation of cell cycle arrest // inferred from electronic annotation /// 0071157 // negative regulation of cell cycle arrest // not recorded /// 0071229 // cellular response to acid // inferred from expression pattern /// 0071236 // cellular response to antibiotic // inferred from expression pattern /// 0071301 // cellular response to vitamin B1 // inferred from expression pattern /// 0071310 // cellular response to organic substance // inferred from expression pattern /// 0071312 // cellular response to alkaloid // inferred from expression pattern /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern /// 0071375 // cellular response to peptide hormone stimulus // inferred from expression pattern /// 0071391 // cellular response to estrogen stimulus // inferred from expression pattern /// 0071407 // cellular response to organic cyclic substance // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern /// 0071494 // cellular response to UV-C // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016604 // nuclear body // not recorded /// 0030666 // endocytic vesicle membrane // not recorded /// 0043234 // protein complex // not recorded /// 0045202 // synapse // inferred from direct assay 0002039 // p53 binding // inferred from physical interaction /// 0002039 // p53 binding // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from mutant phenotype /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0010843 // promoter binding // inferred from direct assay /// 0017163 // basal transcription repressor activity // not recorded /// 0019899 // enzyme binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042975 // peroxisome proliferator activated receptor binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1384428_at AI043872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043872 /DB_XREF=gi:3290607 /DB_XREF=UI-R-C0-jk-a-01-0-UI.s1 /CLONE=UI-R-C0-jk-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.8738.1 /TIER=ConsEnd /STK=0 /UG=Rn.8738 /UG_TITLE=ESTs AI043872 transmembrane protein 181 Tmem181 502228 NM_001130939 1384430_at BF390040 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390040 /DB_XREF=gi:11374882 /DB_XREF=UI-R-BS2-bdr-f-01-0-UI.s1 /CLONE=UI-R-BS2-bdr-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.18729.1 /TIER=ConsEnd /STK=0 /UG=Rn.18729 /UG_TITLE=ESTs BF390040 DPH3, KTI11 homolog (S. cerevisiae) Dph3 680594 NM_001134850 0050709 // negative regulation of protein secretion // not recorded /// 0051099 // positive regulation of binding // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded 1384431_at AI070150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070150 /DB_XREF=gi:3396401 /DB_XREF=UI-R-Y0-lu-h-10-0-UI.s1 /CLONE=UI-R-Y0-lu-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.19671.1 /TIER=ConsEnd /STK=0 /UG=Rn.19671 /UG_TITLE=ESTs AI070150 1384432_at AW531684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531684 /DB_XREF=gi:7174098 /DB_XREF=UI-R-C4-aky-g-10-0-UI.s1 /CLONE=UI-R-C4-aky-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.44961.1 /TIER=ConsEnd /STK=0 /UG=Rn.44961 /UG_TITLE=ESTs, Weakly similar to RENAL TRANSCRIPTION FACTOR KID-1 (R.norvegicus) AW531684 zinc finger and SCAN domain containing 12 Zscan12 266716 XM_002725276 /// XM_002728485 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1384433_at AI072153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072153 /DB_XREF=gi:3398347 /DB_XREF=UI-R-C2-mz-e-09-0-UI.s1 /CLONE=UI-R-C2-mz-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.20076.1 /TIER=ConsEnd /STK=0 /UG=Rn.20076 /UG_TITLE=ESTs AI072153 1384434_at BE113820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113820 /DB_XREF=gi:8505925 /DB_XREF=UI-R-BJ1-awh-g-07-0-UI.s1 /CLONE=UI-R-BJ1-awh-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.24066.1 /TIER=ConsEnd /STK=0 /UG=Rn.24066 /UG_TITLE=ESTs, Highly similar to NFIC MOUSE NUCLEAR FACTOR 1-C (M.musculus) BE113820 1384435_at AA964258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964258 /DB_XREF=gi:4279134 /DB_XREF=UI-R-C0-gy-a-01-0-UI.s1 /CLONE=UI-R-C0-gy-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.11754.1 /TIER=ConsEnd /STK=0 /UG=Rn.11754 /UG_TITLE=ESTs AA964258 transmembrane protein 68 Tmem68 312946 NM_001107903 0008152 // metabolic process // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0008415 // acyltransferase activity // inferred from electronic annotation 1384436_at BI294669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294669 /DB_XREF=gi:14957347 /DB_XREF=UI-R-DK0-cen-e-09-0-UI.s1 /CLONE=UI-R-DK0-cen-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.38648.1 /TIER=ConsEnd /STK=0 /UG=Rn.38648 /UG_TITLE=ESTs BI294669 anoctamin 2-like /// similar to Transmembrane protein 16B LOC100361584 /// LOC683001 100361584 /// 683001 XM_001066415 /// XM_002729409 1384437_at AI576309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576309 /DB_XREF=gi:4560685 /DB_XREF=UI-R-Y0-vb-h-09-0-UI.s1 /CLONE=UI-R-Y0-vb-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.39117.1 /TIER=ConsEnd /STK=0 /UG=Rn.39117 /UG_TITLE=ESTs AI576309 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 Smarca1 317575 XM_002727681 /// XM_229124 0006338 // chromatin remodeling // not recorded /// 0006338 // chromatin remodeling // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0030182 // neuron differentiation // not recorded /// 0043044 // ATP-dependent chromatin remodeling // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016585 // chromatin remodeling complex // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0031491 // nucleosome binding // inferred from electronic annotation 1384438_at AA924634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924634 /DB_XREF=gi:4235825 /DB_XREF=UI-R-A1-dz-a-12-0-UI.s1 /CLONE=UI-R-A1-dz-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.15358.1 /TIER=ConsEnd /STK=0 /UG=Rn.15358 /UG_TITLE=ESTs AA924634 1384439_at BM385726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385726 /DB_XREF=gi:18185779 /DB_XREF=UI-R-CN1-clx-k-24-0-UI.s1 /CLONE=UI-R-CN1-clx-k-24-0-UI /FEA=EST /CNT=2 /TID=Rn.16454.1 /TIER=ConsEnd /STK=0 /UG=Rn.16454 /UG_TITLE=ESTs BM385726 1384440_at BM385619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385619 /DB_XREF=gi:18185672 /DB_XREF=UI-R-DM1-ckd-l-15-0-UI.s1 /CLONE=UI-R-DM1-ckd-l-15-0-UI /FEA=EST /CNT=2 /TID=Rn.16479.1 /TIER=ConsEnd /STK=0 /UG=Rn.16479 /UG_TITLE=ESTs BM385619 1384441_at AA963751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963751 /DB_XREF=gi:4278694 /DB_XREF=UI-R-C0-gt-c-08-0-UI.s1 /CLONE=UI-R-C0-gt-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.17380.1 /TIER=ConsEnd /STK=0 /UG=Rn.17380 /UG_TITLE=ESTs, Weakly similar to BCM_HUMAN B-CELL MATURATION PROTEIN (H.sapiens) AA963751 tumor necrosis factor receptor superfamily, member 17 Tnfrsf17 287034 NM_001105761 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384442_at AI030970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030970 /DB_XREF=gi:3248796 /DB_XREF=UI-R-C0-jf-g-06-0-UI.s1 /CLONE=UI-R-C0-jf-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.18647.1 /TIER=ConsEnd /STK=0 /UG=Rn.18647 /UG_TITLE=ESTs, Weakly similar to CLD3 RAT CLAUDIN-3 (R.norvegicus) AI030970 claudin 6 Cldn6 287098 NM_001102364 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005923 // tight junction // inferred from electronic annotation /// 0005923 // tight junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384443_at AW143568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143568 /DB_XREF=gi:6163376 /DB_XREF=EST293773 /CLONE=RGIBQ49 /FEA=EST /CNT=2 /TID=Rn.18879.3 /TIER=ConsEnd /STK=0 /UG=Rn.18879 /UG_TITLE=ESTs AW143568 vacuolar protein sorting 18 homolog (S. cerevisiae) Vps18 296083 NM_001106499 0007032 // endosome organization // inferred from electronic annotation /// 0007032 // endosome organization // not recorded /// 0007040 // lysosome organization // inferred from electronic annotation /// 0007040 // lysosome organization // not recorded 0005769 // early endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005884 // actin filament // inferred from electronic annotation /// 0005884 // actin filament // not recorded /// 0030897 // HOPS complex // inferred from electronic annotation /// 0030897 // HOPS complex // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1384444_at BF415780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415780 /DB_XREF=gi:11403769 /DB_XREF=UI-R-CA0-bke-g-06-0-UI.s1 /CLONE=UI-R-CA0-bke-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.24000.1 /TIER=ConsEnd /STK=0 /UG=Rn.24000 /UG_TITLE=ESTs BF415780 RIKEN cDNA A830041P22-like LOC100359879 100359879 XM_002725551 /// XM_002728716 0009607 // response to biotic stimulus // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 1384445_at BI288489 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288489 /DB_XREF=gi:14945125 /DB_XREF=UI-R-DK0-cdb-e-02-0-UI.s1 /CLONE=UI-R-DK0-cdb-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.28812.3 /TIER=ConsEnd /STK=0 /UG=Rn.28812 /UG_TITLE=ESTs BI288489 coiled-coil domain containing 163 Ccdc163 298442 NM_001025656 1384446_at BF402271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402271 /DB_XREF=gi:11390246 /DB_XREF=UI-R-CA0-bhq-e-02-0-UI.s1 /CLONE=UI-R-CA0-bhq-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.837.1 /TIER=ConsEnd /STK=0 /UG=Rn.837 /UG_TITLE=ESTs BF402271 1384448_at AA963712 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963712 /DB_XREF=gi:4278655 /DB_XREF=UI-R-E1-gg-d-02-0-UI.s1 /CLONE=UI-R-E1-gg-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.11609.1 /TIER=ConsEnd /STK=0 /UG=Rn.11609 /UG_TITLE=ESTs, Moderately similar to T43439 hypothetical protein DKFZp434I1714.1 (H.sapiens) AA963712 similar to RIKEN cDNA 1700045I19 RGD1565844 317486 NM_001108255 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384449_at AA964588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964588 /DB_XREF=gi:4279462 /DB_XREF=UI-R-C0-gv-a-06-0-UI.s1 /CLONE=UI-R-C0-gv-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.11851.1 /TIER=ConsEnd /STK=0 /UG=Rn.11851 /UG_TITLE=ESTs AA964588 1384450_at AA997717 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997717 /DB_XREF=gi:4280999 /DB_XREF=UI-R-C0-hp-g-11-0-UI.s1 /CLONE=UI-R-C0-hp-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.12559.1 /TIER=ConsEnd /STK=0 /UG=Rn.12559 /UG_TITLE=ESTs AA997717 1384451_at BE116574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116574 /DB_XREF=gi:8508679 /DB_XREF=UI-R-BS1-ayj-g-12-0-UI.s1 /CLONE=UI-R-BS1-ayj-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.15244.1 /TIER=ConsEnd /STK=0 /UG=Rn.15244 /UG_TITLE=ESTs BE116574 1384452_at AA924571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924571 /DB_XREF=gi:4235762 /DB_XREF=UI-R-A1-dz-h-07-0-UI.s1 /CLONE=UI-R-A1-dz-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.15346.1 /TIER=ConsEnd /STK=0 /UG=Rn.15346 /UG_TITLE=ESTs AA924571 Zinc finger, CCHC domain containing 7 Zcchc7 298086 NM_001106658 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384453_at AI045824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045824 /DB_XREF=gi:3292643 /DB_XREF=UI-R-C0-jq-f-12-0-UI.s2 /CLONE=UI-R-C0-jq-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.16322.2 /TIER=ConsEnd /STK=0 /UG=Rn.16322 /UG_TITLE=ESTs AI045824 1384454_at AA819425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819425 /DB_XREF=gi:4228563 /DB_XREF=UI-R-A0-bl-g-09-0-UI.s1 /CLONE=UI-R-A0-bl-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.16761.1 /TIER=ConsEnd /STK=0 /UG=Rn.16761 /UG_TITLE=ESTs, Weakly similar to CBPC RAT MAST CELL CARBOXYPEPTIDASE (R.norvegicus) AA819425 carboxypeptidase A6 Cpa6 312913 NM_001107900 0006508 // proteolysis // inferred from electronic annotation 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1384455_at AA817831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817831 /DB_XREF=gi:4198357 /DB_XREF=UI-R-A0-ae-e-05-0-UI.s1 /CLONE=UI-R-A0-ae-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.16812.1 /TIER=ConsEnd /STK=0 /UG=Rn.16812 /UG_TITLE=ESTs AA817831 rCG31672-like LOC100365921 100365921 XM_002726998 1384456_at BE118916 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118916 /DB_XREF=gi:8511021 /DB_XREF=UI-R-BS1-azw-c-07-0-UI.s1 /CLONE=UI-R-BS1-azw-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.18246.1 /TIER=ConsEnd /STK=0 /UG=Rn.18246 /UG_TITLE=ESTs BE118916 ubiquitin specific protease 24 Usp24 313427 XM_001064937 /// XM_233260 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation 1384457_at AI030755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030755 /DB_XREF=gi:3248581 /DB_XREF=UI-R-C0-jd-g-06-0-UI.s1 /CLONE=UI-R-C0-jd-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.18585.1 /TIER=ConsEnd /STK=0 /UG=Rn.18585 /UG_TITLE=ESTs AI030755 F-box and WD-40 domain protein 17 Fbxw17 361219 NM_001082409 0006508 // proteolysis // inferred from electronic annotation 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1384458_at AI070285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070285 /DB_XREF=gi:3396536 /DB_XREF=UI-R-Y0-lt-b-02-0-UI.s1 /CLONE=UI-R-Y0-lt-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.19705.1 /TIER=ConsEnd /STK=0 /UG=Rn.19705 /UG_TITLE=ESTs AI070285 Ripply1 homolog (zebrafish) Ripply1 680702 XM_001058466 /// XM_002726183 1384459_at AI072270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072270 /DB_XREF=gi:3398464 /DB_XREF=UI-R-C2-ne-c-06-0-UI.s1 /CLONE=UI-R-C2-ne-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.20111.1 /TIER=ConsEnd /STK=0 /UG=Rn.20111 /UG_TITLE=ESTs AI072270 1384460_at AI072669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072669 /DB_XREF=gi:3398863 /DB_XREF=UI-R-C2-nk-b-12-0-UI.s1 /CLONE=UI-R-C2-nk-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.20220.1 /TIER=ConsEnd /STK=0 /UG=Rn.20220 /UG_TITLE=ESTs AI072669 1384461_at AI071686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071686 /DB_XREF=gi:3397901 /DB_XREF=UI-R-C1-ku-h-10-0-UI.s2 /CLONE=UI-R-C1-ku-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.20602.1 /TIER=ConsEnd /STK=0 /UG=Rn.20602 /UG_TITLE=ESTs AI071686 1384462_at AA819526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819526 /DB_XREF=gi:4228662 /DB_XREF=UI-R-A0-bf-e-09-0-UI.s1 /CLONE=UI-R-A0-bf-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.2103.1 /TIER=ConsEnd /STK=0 /UG=Rn.2103 /UG_TITLE=ESTs AA819526 1384463_at AW523485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523485 /DB_XREF=gi:7165870 /DB_XREF=UI-R-BO0-aho-f-12-0-UI.s1 /CLONE=UI-R-BO0-aho-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.22241.1 /TIER=ConsEnd /STK=0 /UG=Rn.22241 /UG_TITLE=ESTs AW523485 1384464_at AI145323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145323 /DB_XREF=gi:3667122 /DB_XREF=UI-R-BT0-pq-f-08-0-UI.s1 /CLONE=UI-R-BT0-pq-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.25220.1 /TIER=ConsEnd /STK=0 /UG=Rn.25220 /UG_TITLE=ESTs, Weakly similar to T20342 hypothetical protein D2013.8 - Caenorhabditis elegans (C.elegans) AI145323 SREBF chaperone Scap 301024 NM_001100966 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006994 // positive regulation of transcription via sterol regulatory element binding involved in ER-nuclear sterol response pathway // inferred from electronic annotation /// 0006994 // positive regulation of transcription via sterol regulatory element binding involved in ER-nuclear sterol response pathway // not recorded /// 0007568 // aging // inferred from expression pattern /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0019217 // regulation of fatty acid metabolic process // not recorded /// 0019217 // regulation of fatty acid metabolic process // inferred from electronic annotation /// 0032868 // response to insulin stimulus // inferred from electronic annotation /// 0032868 // response to insulin stimulus // not recorded /// 0042304 // regulation of fatty acid biosynthetic process // inferred from electronic annotation /// 0042304 // regulation of fatty acid biosynthetic process // not recorded /// 0045540 // regulation of cholesterol biosynthetic process // inferred from electronic annotation /// 0045540 // regulation of cholesterol biosynthetic process // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0012507 // ER to Golgi transport vesicle membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1384465_at AI136693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136693 /DB_XREF=gi:3637470 /DB_XREF=UI-R-C2p-nq-f-10-0-UI.s1 /CLONE=UI-R-C2p-nq-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.27212.1 /TIER=ConsEnd /STK=0 /UG=Rn.27212 /UG_TITLE=ESTs, Weakly similar to T14152 synaptic scaffolding protein S-SCAM - rat (R.norvegicus) AI136693 paraspeckle component 1 Pspc1 305910 NM_001025672 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0042382 // paraspeckles // inferred from electronic annotation /// 0042382 // paraspeckles // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384466_at AA875198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875198 /DB_XREF=gi:4231077 /DB_XREF=UI-R-E0-cu-c-07-0-UI.s1 /CLONE=UI-R-E0-cu-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.2826.1 /TIER=ConsEnd /STK=0 /UG=Rn.2826 /UG_TITLE=ESTs AA875198 isoprenoid synthase domain containing Ispd 493574 NM_001008386 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1384467_at BF420276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420276 /DB_XREF=gi:11408265 /DB_XREF=UI-R-BJ2-bpl-a-01-0-UI.s1 /CLONE=UI-R-BJ2-bpl-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.28371.1 /TIER=ConsEnd /STK=0 /UG=Rn.28371 /UG_TITLE=ESTs BF420276 NAD kinase Nadk 100125370 NM_001109678 0008152 // metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003951 // NAD+ kinase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384468_at BI283314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283314 /DB_XREF=gi:14934938 /DB_XREF=UI-R-DA0-bzf-f-08-0-UI.s1 /CLONE=UI-R-DA0-bzf-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.34755.1 /TIER=ConsEnd /STK=0 /UG=Rn.34755 /UG_TITLE=ESTs BI283314 1384469_at AI502224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502224 /DB_XREF=gi:4400075 /DB_XREF=UI-R-C0-jb-b-09-0-UI.s1 /CLONE=UI-R-C0-jb-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.35782.1 /TIER=ConsEnd /STK=0 /UG=Rn.35782 /UG_TITLE=ESTs, Weakly similar to ATP-binding cassette 2 (Mus musculus) (M.musculus) AI502224 ATP-binding cassette, sub-family A (ABC1), member 5 Abca5 286970 NM_173307 0006810 // transport // inferred from electronic annotation /// 0010745 // negative regulation of macrophage derived foam cell differentiation // not recorded /// 0015918 // sterol transport // non-traceable author statement /// 0033344 // cholesterol efflux // not recorded /// 0034375 // high-density lipoprotein particle remodeling // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1384470_at BE114218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114218 /DB_XREF=gi:8506323 /DB_XREF=UI-R-CA0-axo-e-05-0-UI.s1 /CLONE=UI-R-CA0-axo-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.39323.1 /TIER=ConsEnd /STK=0 /UG=Rn.39323 /UG_TITLE=ESTs BE114218 1384471_at AI716461 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716461 /DB_XREF=gi:5033714 /DB_XREF=UI-R-Y0-ach-c-11-0-UI.s1 /CLONE=UI-R-Y0-ach-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.41341.1 /TIER=ConsEnd /STK=0 /UG=Rn.41341 /UG_TITLE=ESTs AI716461 1384472_at AA926022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926022 /DB_XREF=gi:4237213 /DB_XREF=UI-R-A1-es-d-10-0-UI.s1 /CLONE=UI-R-A1-es-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.6591.2 /TIER=ConsEnd /STK=0 /UG=Rn.6591 /UG_TITLE=ESTs, Weakly similar to T17281 hypothetical protein DKFZp434I1735.1 (H.sapiens) AA926022 HEAT repeat containing 5B Heatr5b 362683 NM_001191064 /// XM_001053592 /// XM_002726676 0005488 // binding // inferred from electronic annotation 1384473_at AA998651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998651 /DB_XREF=gi:4291327 /DB_XREF=UI-R-C0-ig-c-01-0-UI.s1 /CLONE=UI-R-C0-ig-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.7272.1 /TIER=ConsEnd /STK=0 /UG=Rn.7272 /UG_TITLE=ESTs AA998651 1384474_at AA860010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA860010 /DB_XREF=gi:4230542 /DB_XREF=UI-R-E0-ca-c-07-0-UI.s1 /CLONE=UI-R-E0-ca-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.872.1 /TIER=ConsEnd /STK=0 /UG=Rn.872 /UG_TITLE=ESTs AA860010 1384475_at AW918576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918576 /DB_XREF=gi:8084356 /DB_XREF=EST349880 /CLONE=RGIEU94 /FEA=EST /CNT=2 /TID=Rn.40322.3 /TIER=ConsEnd /STK=0 /UG=Rn.40322 /UG_TITLE=ESTs, Weakly similar to LIS1 MOUSE PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB ALPHA SUBUNIT (R.norvegicus) AW918576 rCG49027-like LOC100362836 100362836 XM_002726882 /// XM_002729781 1384476_at AW916139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916139 /DB_XREF=gi:8081857 /DB_XREF=EST347443 /CLONE=RGIDI54 /FEA=EST /CNT=2 /TID=Rn.14280.2 /TIER=ConsEnd /STK=0 /UG=Rn.14280 /UG_TITLE=ESTs, Highly similar to A57469 CMP-N-acetylneuraminate monooxygenase (M.musculus) AW916139 cytidine monophosphate-N-acetylneuraminic acid hydroxylase Cmah 361245 NM_001024273 0046381 // CMP-N-acetylneuraminate metabolic process // inferred from electronic annotation /// 0046381 // CMP-N-acetylneuraminate metabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004497 // monooxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0030338 // CMP-N-acetylneuraminate monooxygenase activity // inferred from electronic annotation /// 0030338 // CMP-N-acetylneuraminate monooxygenase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation 1384478_at BF549837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549837 /DB_XREF=gi:11659567 /DB_XREF=UI-R-A0-ap-g-12-0-UI.r1 /CLONE=UI-R-A0-ap-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.35070.1 /TIER=ConsEnd /STK=0 /UG=Rn.35070 /UG_TITLE=ESTs BF549837 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 Mllt3 114510 NM_053718 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007379 // segment specification // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384479_at BM386119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386119 /DB_XREF=gi:18186172 /DB_XREF=UI-R-CN1-cjf-a-23-0-UI.s1 /CLONE=UI-R-CN1-cjf-a-23-0-UI /FEA=EST /CNT=2 /TID=Rn.78014.1 /TIER=ConsEnd /STK=0 /UG=Rn.78014 /UG_TITLE=ESTs BM386119 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3) Galnt3 366061 NM_001015032 0018242 // protein O-linked glycosylation via serine // not recorded /// 0018242 // protein O-linked glycosylation via serine // inferred from electronic annotation /// 0018243 // protein O-linked glycosylation via threonine // not recorded /// 0018243 // protein O-linked glycosylation via threonine // inferred from electronic annotation 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // not recorded /// 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030145 // manganese ion binding // not recorded /// 0030145 // manganese ion binding // inferred from electronic annotation 1384480_at BG376020 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376020 /DB_XREF=gi:13300492 /DB_XREF=UI-R-CS0-bts-e-04-0-UI.s1 /CLONE=UI-R-CS0-bts-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.12382.1 /TIER=ConsEnd /STK=0 /UG=Rn.12382 /UG_TITLE=ESTs BG376020 hypothetical protein LOC100361845 /// similar to B0511.12 LOC100361845 /// LOC690217 100361845 /// 690217 XM_002726706 /// XM_002729636 /// XM_002729652 0016021 // integral to membrane // inferred from electronic annotation 1384481_at BG376273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376273 /DB_XREF=gi:13300745 /DB_XREF=UI-R-CU0-bus-f-01-0-UI.s1 /CLONE=UI-R-CU0-bus-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.20703.1 /TIER=ConsEnd /STK=0 /UG=Rn.20703 /UG_TITLE=ESTs BG376273 1384482_at AI070736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070736 /DB_XREF=gi:3396987 /DB_XREF=UI-R-C2-no-b-06-0-UI.s1 /CLONE=UI-R-C2-no-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.19542.1 /TIER=ConsEnd /STK=0 /UG=Rn.19542 /UG_TITLE=ESTs AI070736 1384483_at BI274216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274216 /DB_XREF=gi:14884931 /DB_XREF=UI-R-CW0-bwg-c-12-0-UI.s1 /CLONE=UI-R-CW0-bwg-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.43963.1 /TIER=ConsEnd /STK=0 /UG=Rn.43963 /UG_TITLE=ESTs, Weakly similar to S12207 hypothetical protein (M.musculus) BI274216 1384484_at AI172598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172598 /DB_XREF=gi:3712638 /DB_XREF=UI-R-C2p-oh-d-05-0-UI.s1 /CLONE=UI-R-C2p-oh-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.22659.1 /TIER=ConsEnd /STK=0 /UG=Rn.22659 /UG_TITLE=ESTs AI172598 1384485_at BE116371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116371 /DB_XREF=gi:8508476 /DB_XREF=UI-R-BS1-ayc-e-03-0-UI.s1 /CLONE=UI-R-BS1-ayc-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.35625.1 /TIER=ConsEnd /STK=0 /UG=Rn.35625 /UG_TITLE=ESTs BE116371 Protein tyrosine phosphatase, receptor type, U Ptpru 116680 NM_001191575 /// XM_001063025 /// XM_002729546 /// XM_342930 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0030182 // neuron differentiation // non-traceable author statement /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0034109 // homotypic cell-cell adhesion // inferred from electronic annotation /// 0034109 // homotypic cell-cell adhesion // not recorded /// 0034394 // protein localization at cell surface // inferred from electronic annotation /// 0034394 // protein localization at cell surface // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0005911 // cell-cell junction // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1384486_at BI288961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288961 /DB_XREF=gi:14946046 /DB_XREF=UI-R-DK0-cdi-f-11-0-UI.s1 /CLONE=UI-R-DK0-cdi-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.43314.1 /TIER=ConsEnd /STK=0 /UG=Rn.43314 /UG_TITLE=ESTs BI288961 1384487_at BF557192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557192 /DB_XREF=gi:11666922 /DB_XREF=UI-R-E1-ga-f-04-0-UI.r1 /CLONE=UI-R-E1-ga-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.11448.2 /TIER=ConsEnd /STK=0 /UG=Rn.11448 /UG_TITLE=ESTs BF557192 doublesex and mab-3 related transcription factor 2 Dmrt2 309430 NM_001107597 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007548 // sex differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1384488_at BI290067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290067 /DB_XREF=gi:14948287 /DB_XREF=UI-R-DK0-cfr-d-12-0-UI.s1 /CLONE=UI-R-DK0-cfr-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.79109.2 /TIER=ConsEnd /STK=0 /UG=Rn.79109 /UG_TITLE=ESTs, Highly similar to CDN7 MOUSE CYCLIN-DEPENDENT KINASE 4 INHIBITOR D (M.musculus) BI290067 similar to cyclin-dependent kinase inhibitor 2D Cdkn2d 494444 NM_001009719 0016301 // kinase activity // inferred from electronic annotation 1384489_at BM387189 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387189 /DB_XREF=gi:18187242 /DB_XREF=UI-R-CN1-cji-n-17-0-UI.s1 /CLONE=UI-R-CN1-cji-n-17-0-UI /FEA=EST /CNT=2 /TID=Rn.74139.1 /TIER=ConsEnd /STK=0 /UG=Rn.74139 /UG_TITLE=ESTs BM387189 lysine (K)-specific demethylase 2A Kdm2a 361700 NM_001108515 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384490_at BM391710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391710 /DB_XREF=gi:18191763 /DB_XREF=UI-R-CN1-cjs-n-14-0-UI.s1 /CLONE=UI-R-CN1-cjs-n-14-0-UI /FEA=EST /CNT=2 /TID=Rn.77740.1 /TIER=ConsEnd /STK=0 /UG=Rn.77740 /UG_TITLE=ESTs, Weakly similar to PE2R RAT 20-ALPHA-HYDROXYSTEROID DEHYDROGENASE (R.norvegicus) BM391710 1384491_at BI283592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283592 /DB_XREF=gi:14935493 /DB_XREF=UI-R-DA0-bze-d-01-0-UI.s1 /CLONE=UI-R-DA0-bze-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.77806.1 /TIER=ConsEnd /STK=0 /UG=Rn.77806 /UG_TITLE=ESTs BI283592 aldehyde oxidase 4 Aox4 316424 NM_001008523 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation 1384492_at AA998153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998153 /DB_XREF=gi:4287886 /DB_XREF=UI-R-C0-id-d-09-0-UI.s1 /CLONE=UI-R-C0-id-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.43035.1 /TIER=ConsEnd /STK=0 /UG=Rn.43035 /UG_TITLE=ESTs AA998153 1384493_at BI286737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286737 /DB_XREF=gi:14941671 /DB_XREF=UI-R-CT0s-car-b-05-0-UI.s1 /CLONE=UI-R-CT0s-car-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.56474.1 /TIER=ConsEnd /STK=0 /UG=Rn.56474 /UG_TITLE=ESTs, Weakly similar to GTO1_RAT GLUTATHIONE TRANSFERASE OMEGA 1 (GSTO 1-1) (GLUTATHIONE-DEPENDENT DEHYDROASCORBATE REDUCTASE) (R.norvegicus) BI286737 glutathione S-transferase omega 2 Gsto2 309465 NM_001012071 0008152 // metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004364 // glutathione transferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1384494_at BI303215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303215 /DB_XREF=gi:14979495 /DB_XREF=UI-R-DQ0-ciz-m-22-0-UI.s1 /CLONE=UI-R-DQ0-ciz-m-22-0-UI /FEA=EST /CNT=2 /TID=Rn.77435.1 /TIER=ConsEnd /STK=0 /UG=Rn.77435 /UG_TITLE=ESTs BI303215 1384495_at BI297105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297105 /DB_XREF=gi:14962187 /DB_XREF=UI-R-DK0-cdt-d-04-0-UI.s1 /CLONE=UI-R-DK0-cdt-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.20439.1 /TIER=ConsEnd /STK=0 /UG=Rn.20439 /UG_TITLE=ESTs BI297105 rCG46494-like LOC100360142 100360142 XM_002724866 /// XM_002728004 1384496_at BI274749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274749 /DB_XREF=gi:14885967 /DB_XREF=UI-R-CX0-bxd-e-11-0-UI.s1 /CLONE=UI-R-CX0-bxd-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.21794.1 /TIER=ConsEnd /STK=0 /UG=Rn.21794 /UG_TITLE=ESTs BI274749 1384497_at BG666291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666291 /DB_XREF=gi:13888213 /DB_XREF=DRABPH05 /CLONE=DRABPH05 /FEA=EST /CNT=2 /TID=Rn.24416.1 /TIER=ConsEnd /STK=0 /UG=Rn.24416 /UG_TITLE=ESTs, Weakly similar to I60307 beta-galactosidase, alpha peptide - Escherichia coli (E.coli) BG666291 Kruppel-like factor 7 (ubiquitous) Klf7 363243 NM_001108800 0007409 // axonogenesis // not recorded /// 0007411 // axon guidance // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0048813 // dendrite morphogenesis // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded 1384498_at BI274185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274185 /DB_XREF=gi:14884867 /DB_XREF=UI-R-CW0-bwg-a-05-0-UI.s1 /CLONE=UI-R-CW0-bwg-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.31965.1 /TIER=ConsEnd /STK=0 /UG=Rn.31965 /UG_TITLE=ESTs BI274185 1384499_at BG373566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373566 /DB_XREF=gi:13270103 /DB_XREF=UI-R-CV1-bse-c-10-0-UI.s1 /CLONE=UI-R-CV1-bse-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.38622.1 /TIER=ConsEnd /STK=0 /UG=Rn.38622 /UG_TITLE=ESTs, Moderately similar to A61209 hypertension-associated protein SA - rat (R.norvegicus) BG373566 butyryl Coenzyme A synthetase 1 Bucs1 361638 NM_001108502 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation 1384500_at BI288565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288565 /DB_XREF=gi:14945277 /DB_XREF=UI-R-DK0-cdg-d-04-0-UI.s1 /CLONE=UI-R-DK0-cdg-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.45878.1 /TIER=ConsEnd /STK=0 /UG=Rn.45878 /UG_TITLE=ESTs BI288565 coiled-coil domain containing 30 Ccdc30 362580 XM_001073839 /// XM_342899 0007160 // cell-matrix adhesion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1384501_at BI303932 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303932 /DB_XREF=gi:14980212 /DB_XREF=UI-R-DR0-cjb-n-20-0-UI.s1 /CLONE=UI-R-DR0-cjb-n-20-0-UI /FEA=EST /CNT=2 /TID=Rn.53012.1 /TIER=ConsEnd /STK=0 /UG=Rn.53012 /UG_TITLE=ESTs BI303932 1384502_at BI290539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290539 /DB_XREF=gi:14949202 /DB_XREF=UI-R-DK0-cgd-d-11-0-UI.s1 /CLONE=UI-R-DK0-cgd-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.53662.1 /TIER=ConsEnd /STK=0 /UG=Rn.53662 /UG_TITLE=ESTs BI290539 F-box protein 42 Fbxo42 362646 NM_001108691 0005515 // protein binding // inferred from electronic annotation 1384503_at BI282567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282567 /DB_XREF=gi:14933465 /DB_XREF=UI-R-DD0-bzy-e-07-0-UI.s1 /CLONE=UI-R-DD0-bzy-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.77746.1 /TIER=ConsEnd /STK=0 /UG=Rn.77746 /UG_TITLE=ESTs, Highly similar to NRPN RAT NEUROPSIN PRECURSOR (R.norvegicus) BI282567 kallikrein related-peptidase 8 Klk8 308565 NM_001107509 0006508 // proteolysis // inferred from electronic annotation /// 0007613 // memory // not recorded /// 0007613 // memory // inferred from sequence or structural similarity /// 0007613 // memory // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008219 // cell death // not recorded /// 0008219 // cell death // inferred from sequence or structural similarity /// 0008219 // cell death // inferred from electronic annotation /// 0009611 // response to wounding // not recorded /// 0009611 // response to wounding // inferred from sequence or structural similarity /// 0009611 // response to wounding // inferred from electronic annotation /// 0031642 // negative regulation of myelination // not recorded /// 0031642 // negative regulation of myelination // inferred from sequence or structural similarity /// 0031642 // negative regulation of myelination // inferred from electronic annotation /// 0043616 // keratinocyte proliferation // not recorded /// 0043616 // keratinocyte proliferation // inferred from sequence or structural similarity /// 0043616 // keratinocyte proliferation // inferred from electronic annotation /// 0048681 // negative regulation of axon regeneration // not recorded /// 0048681 // negative regulation of axon regeneration // inferred from sequence or structural similarity /// 0048681 // negative regulation of axon regeneration // inferred from electronic annotation /// 0048812 // neuron projection morphogenesis // not recorded /// 0048812 // neuron projection morphogenesis // inferred from sequence or structural similarity /// 0048812 // neuron projection morphogenesis // inferred from electronic annotation /// 0050807 // regulation of synapse organization // not recorded /// 0050807 // regulation of synapse organization // inferred from sequence or structural similarity /// 0050807 // regulation of synapse organization // inferred from electronic annotation /// 0050808 // synapse organization // not recorded /// 0050808 // synapse organization // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from sequence or structural similarity /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1384504_at BI286449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286449 /DB_XREF=gi:14941107 /DB_XREF=UI-R-DE0-cal-b-08-0-UI.s1 /CLONE=UI-R-DE0-cal-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.79184.1 /TIER=ConsEnd /STK=0 /UG=Rn.79184 /UG_TITLE=ESTs, Moderately similar to T14796 hypothetical protein DKFZp434B203.1 (H.sapiens) BI286449 1384505_at BI294773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294773 /DB_XREF=gi:14957554 /DB_XREF=UI-R-DK0-cec-a-02-0-UI.s1 /CLONE=UI-R-DK0-cec-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.81252.1 /TIER=ConsEnd /STK=0 /UG=Rn.81252 /UG_TITLE=ESTs BI294773 1384506_at H33706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33706 /DB_XREF=gi:979123 /DB_XREF=EST109958 /CLONE=RPNAX67 /FEA=EST /CNT=2 /TID=Rn.47255.1 /TIER=ConsEnd /STK=0 /UG=Rn.47255 /UG_TITLE=ESTs H33706 unc-5 homolog C (C. elegans) Unc5c 362049 NM_199407 0006915 // apoptosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0030334 // regulation of cell migration // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005042 // netrin receptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384507_at AA817708 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817708 /DB_XREF=gi:4198238 /DB_XREF=UI-R-A0-aa-e-03-0-UI.s1 /CLONE=UI-R-A0-aa-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.16375.2 /TIER=ConsEnd /STK=0 /UG=Rn.16375 /UG_TITLE=ESTs AA817708 family with sequence similarity 105, member A Fam105a 310190 NM_001037648 1384508_at AI576469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576469 /DB_XREF=gi:4560845 /DB_XREF=UI-R-G0-us-d-08-0-UI.s1 /CLONE=UI-R-G0-us-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.20669.1 /TIER=ConsEnd /STK=0 /UG=Rn.20669 /UG_TITLE=ESTs AI576469 1384509_s_at BF558981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558981 /DB_XREF=gi:11668711 /DB_XREF=UI-R-A0-bb-b-05-0-UI.r1 /CLONE=UI-R-A0-bb-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.65532.1 /TIER=ConsEnd /STK=0 /UG=Rn.65532 /UG_TITLE=ESTs BF558981 protocadherin 17 Pcdh17 306055 NM_001107279 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1384510_at BI288603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288603 /DB_XREF=gi:14945351 /DB_XREF=UI-R-DK0-cdg-g-11-0-UI.s1 /CLONE=UI-R-DK0-cdg-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.18177.1 /TIER=ConsEnd /STK=0 /UG=Rn.18177 /UG_TITLE=ESTs BI288603 1384511_at BF558851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558851 /DB_XREF=gi:11668581 /DB_XREF=UI-R-A1-dv-f-06-0-UI.r1 /CLONE=UI-R-A1-dv-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.72714.1 /TIER=ConsEnd /STK=0 /UG=Rn.72714 /UG_TITLE=ESTs BF558851 DnaJ (Hsp40) homolog, subfamily B, member 5 Dnajb5 313811 NM_001108004 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006457 // protein folding // inferred from electronic annotation /// 0006986 // response to unfolded protein // not recorded /// 0006986 // response to unfolded protein // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1384512_at AI072137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072137 /DB_XREF=gi:3398331 /DB_XREF=UI-R-C2-mz-b-08-0-UI.s1 /CLONE=UI-R-C2-mz-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.33396.1 /TIER=ConsEnd /STK=0 /UG=Rn.33396 /UG_TITLE=ESTs AI072137 hypothetical protein LOC100363441 LOC100363441 100363441 XM_002726885 /// XM_002729784 1384513_at AI071056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071056 /DB_XREF=gi:3397271 /DB_XREF=UI-R-C2-no-b-11-0-UI.s1 /CLONE=UI-R-C2-no-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.19915.1 /TIER=ConsEnd /STK=0 /UG=Rn.19915 /UG_TITLE=ESTs AI071056 1384514_at BF398600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398600 /DB_XREF=gi:11383594 /DB_XREF=UI-R-BS2-beq-f-11-0-UI.s1 /CLONE=UI-R-BS2-beq-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.14948.1 /TIER=ConsEnd /STK=0 /UG=Rn.14948 /UG_TITLE=ESTs BF398600 1384515_at BF388057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388057 /DB_XREF=gi:11372881 /DB_XREF=UI-R-CA1-bbx-g-06-0-UI.s1 /CLONE=UI-R-CA1-bbx-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.58672.1 /TIER=ConsEnd /STK=0 /UG=Rn.58672 /UG_TITLE=ESTs BF388057 hairy/enhancer-of-split related with YRPW motif 2 Hey2 155430 NM_130417 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // not recorded /// 0045746 // negative regulation of Notch signaling pathway // inferred from electronic annotation /// 0045746 // negative regulation of Notch signaling pathway // not recorded /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060045 // positive regulation of cardiac muscle cell proliferation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384516_at AI072919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072919 /DB_XREF=gi:3399113 /DB_XREF=UI-R-Y0-mc-f-05-0-UI.s1 /CLONE=UI-R-Y0-mc-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.20300.1 /TIER=ConsEnd /STK=0 /UG=Rn.20300 /UG_TITLE=ESTs AI072919 Metal response element binding transcription factor 2 Mtf2 360905 NM_001100898 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384517_at BF420144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420144 /DB_XREF=gi:11408133 /DB_XREF=UI-R-BJ2-bpj-d-12-0-UI.s1 /CLONE=UI-R-BJ2-bpj-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.14564.1 /TIER=ConsEnd /STK=0 /UG=Rn.14564 /UG_TITLE=ESTs BF420144 1384518_at BE107536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107536 /DB_XREF=gi:8499641 /DB_XREF=UI-R-BS1-ayu-h-02-0-UI.s1 /CLONE=UI-R-BS1-ayu-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.12860.2 /TIER=ConsEnd /STK=0 /UG=Rn.12860 /UG_TITLE=ESTs BE107536 PHD finger protein 14 Phf14 500030 NM_001110492 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384519_at BG377412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377412 /DB_XREF=gi:13301884 /DB_XREF=UI-R-CU0-buy-c-01-0-UI.s1 /CLONE=UI-R-CU0-buy-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.73173.1 /TIER=ConsEnd /STK=0 /UG=Rn.73173 /UG_TITLE=ESTs, Highly similar to T46504 hypothetical protein DKFZp434M179.1 (H.sapiens) BG377412 SEC63 homolog (S. cerevisiae) Sec63 309858 NM_001107637 0006457 // protein folding // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1384520_at AW523106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523106 /DB_XREF=gi:7165491 /DB_XREF=UI-R-BO0-ahq-d-06-0-UI.s1 /CLONE=UI-R-BO0-ahq-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.45558.1 /TIER=ConsEnd /STK=0 /UG=Rn.45558 /UG_TITLE=ESTs AW523106 Similar to RIKEN cDNA 9330182L06 RGD1563349 502727 NM_001109345 0005515 // protein binding // inferred from electronic annotation 1384521_at BE117499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117499 /DB_XREF=gi:8509604 /DB_XREF=UI-R-BS1-ayo-e-08-0-UI.s1 /CLONE=UI-R-BS1-ayo-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.52848.1 /TIER=ConsEnd /STK=0 /UG=Rn.52848 /UG_TITLE=ESTs BE117499 1384522_at BM389869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389869 /DB_XREF=gi:18189922 /DB_XREF=UI-R-CN1-cji-d-02-0-UI.s1 /CLONE=UI-R-CN1-cji-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.45327.1 /TIER=ConsEnd /STK=0 /UG=Rn.45327 /UG_TITLE=ESTs BM389869 synaptotagmin-like 3 Sytl3 499017 NM_001127560 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006887 // exocytosis // not recorded 0005624 // membrane fraction // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005543 // phospholipid binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from electronic annotation 1384523_at BF400964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400964 /DB_XREF=gi:11388939 /DB_XREF=UI-R-CA0-bgi-a-03-0-UI.s1 /CLONE=UI-R-CA0-bgi-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.47945.1 /TIER=ConsEnd /STK=0 /UG=Rn.47945 /UG_TITLE=ESTs, Moderately similar to 2017356A PMS1 gene (H.sapiens) BF400964 postmeiotic segregation increased 1 (S. cerevisiae) Pms1 494322 NM_001009535 0006298 // mismatch repair // inferred from electronic annotation /// 0006298 // mismatch repair // not recorded /// 0042493 // response to drug // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0030983 // mismatched DNA binding // inferred from electronic annotation 1384524_at BM385707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385707 /DB_XREF=gi:18185760 /DB_XREF=UI-R-CN1-clx-i-06-0-UI.s1 /CLONE=UI-R-CN1-clx-i-06-0-UI /FEA=EST /CNT=2 /TID=Rn.61836.1 /TIER=ConsEnd /STK=0 /UG=Rn.61836 /UG_TITLE=ESTs BM385707 1384525_at AI549335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549335 /DB_XREF=gi:4466823 /DB_XREF=UI-R-C3-ty-e-03-0-UI.s1 /CLONE=UI-R-C3-ty-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.41856.1 /TIER=ConsEnd /STK=0 /UG=Rn.41856 /UG_TITLE=ESTs AI549335 dedicator of cytokinesis 11 Dock11 313438 NM_001191760 /// XM_001061988 /// XM_233283 0050790 // regulation of catalytic activity // not recorded 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from electronic annotation /// 0017048 // Rho GTPase binding // not recorded /// 0051020 // GTPase binding // inferred from electronic annotation 1384526_at BF419582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419582 /DB_XREF=gi:11407571 /DB_XREF=UI-R-CA0-bpd-g-11-0-UI.s1 /CLONE=UI-R-CA0-bpd-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.46623.1 /TIER=ConsEnd /STK=0 /UG=Rn.46623 /UG_TITLE=ESTs BF419582 testis expressed 15 Tex15 290803 NM_001106087 0007129 // synapsis // not recorded /// 0007130 // synaptonemal complex assembly // not recorded /// 0007140 // male meiosis // not recorded /// 0007283 // spermatogenesis // not recorded /// 0009566 // fertilization // not recorded /// 0010569 // regulation of double-strand break repair via homologous recombination // not recorded /// 0030539 // male genitalia development // not recorded /// 0032880 // regulation of protein localization // not recorded /// 0034502 // protein localization to chromosome // not recorded /// 0048873 // homeostasis of number of cells within a tissue // not recorded 1384527_at AW535731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535731 /DB_XREF=gi:7178145 /DB_XREF=UI-R-BS0-aod-d-03-0-UI.s1 /CLONE=UI-R-BS0-aod-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.48552.1 /TIER=ConsEnd /STK=0 /UG=Rn.48552 /UG_TITLE=ESTs AW535731 1384528_at BF416474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416474 /DB_XREF=gi:11404463 /DB_XREF=UI-R-CA0-bkk-a-07-0-UI.s1 /CLONE=UI-R-CA0-bkk-a-07-0-UI /FEA=EST /CNT=2 /TID=Rn.63034.1 /TIER=ConsEnd /STK=0 /UG=Rn.63034 /UG_TITLE=ESTs, Moderately similar to T08700 hypothetical protein DKFZp564G013.1 (H.sapiens) BF416474 retinoic acid induced 14 Rai14 294804 NM_001011947 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation 0005515 // protein binding // not recorded 1384529_at BE104877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104877 /DB_XREF=gi:8496977 /DB_XREF=UI-R-BX0-aru-g-06-0-UI.s1 /CLONE=UI-R-BX0-aru-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.11622.1 /TIER=ConsEnd /STK=0 /UG=Rn.11622 /UG_TITLE=ESTs BE104877 1384530_at BF418775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418775 /DB_XREF=gi:11406764 /DB_XREF=UI-R-BJ2-bql-h-01-0-UI.s1 /CLONE=UI-R-BJ2-bql-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.12382.2 /TIER=ConsEnd /STK=0 /UG=Rn.12382 /UG_TITLE=ESTs BF418775 hypothetical protein LOC100361845 LOC100361845 100361845 XM_002729636 1384531_at BF553130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF553130 /DB_XREF=gi:11662860 /DB_XREF=UI-R-C2-ni-a-05-0-UI.r1 /CLONE=UI-R-C2-ni-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.14560.3 /TIER=ConsEnd /STK=0 /UG=Rn.14560 /UG_TITLE=ESTs BF553130 crumbs homolog 3 (Drosophila) Crb3 301112 NM_001025661 1384532_at BF556192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556192 /DB_XREF=gi:11665922 /DB_XREF=UI-R-A1-ec-c-11-0-UI.r1 /CLONE=UI-R-A1-ec-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.15526.1 /TIER=ConsEnd /STK=0 /UG=Rn.15526 /UG_TITLE=ESTs BF556192 1384533_at AW527248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527248 /DB_XREF=gi:7169662 /DB_XREF=UI-R-BO1-ajs-b-09-0-UI.s1 /CLONE=UI-R-BO1-ajs-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.16271.1 /TIER=ConsEnd /STK=0 /UG=Rn.16271 /UG_TITLE=ESTs AW527248 1384534_at BF412469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412469 /DB_XREF=gi:11400458 /DB_XREF=UI-R-BT1-bnd-g-11-0-UI.s1 /CLONE=UI-R-BT1-bnd-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.17776.1 /TIER=ConsEnd /STK=0 /UG=Rn.17776 /UG_TITLE=ESTs BF412469 1384535_at BF406790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406790 /DB_XREF=gi:11394765 /DB_XREF=UI-R-BJ2-bpp-b-08-0-UI.s1 /CLONE=UI-R-BJ2-bpp-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.24779.1 /TIER=ConsEnd /STK=0 /UG=Rn.24779 /UG_TITLE=ESTs BF406790 1384536_at BE105669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105669 /DB_XREF=gi:8497771 /DB_XREF=UI-R-BX0-arx-f-04-0-UI.s1 /CLONE=UI-R-BX0-arx-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.26530.1 /TIER=ConsEnd /STK=0 /UG=Rn.26530 /UG_TITLE=ESTs BE105669 1384537_at BE116395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116395 /DB_XREF=gi:8508500 /DB_XREF=UI-R-BS1-ayc-g-04-0-UI.s1 /CLONE=UI-R-BS1-ayc-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.39427.1 /TIER=ConsEnd /STK=0 /UG=Rn.39427 /UG_TITLE=ESTs BE116395 1384538_at BE115544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115544 /DB_XREF=gi:8507649 /DB_XREF=UI-R-BJ1-avw-b-06-0-UI.s1 /CLONE=UI-R-BJ1-avw-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.42767.2 /TIER=ConsEnd /STK=0 /UG=Rn.42767 /UG_TITLE=ESTs BE115544 misato homolog 1 (Drosophila) Msto1 295237 NM_001106443 0007005 // mitochondrion organization // not recorded /// 0048311 // mitochondrion distribution // not recorded /// 0051258 // protein polymerization // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005741 // mitochondrial outer membrane // not recorded /// 0043234 // protein complex // inferred from electronic annotation 1384539_at BE118695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118695 /DB_XREF=gi:8510800 /DB_XREF=UI-R-BS1-azr-f-09-0-UI.s1 /CLONE=UI-R-BS1-azr-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.48852.1 /TIER=ConsEnd /STK=0 /UG=Rn.48852 /UG_TITLE=ESTs BE118695 1384540_at BE101066 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101066 /DB_XREF=gi:8492972 /DB_XREF=UI-R-BJ1-aty-g-06-0-UI.s1 /CLONE=UI-R-BJ1-aty-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.50030.1 /TIER=ConsEnd /STK=0 /UG=Rn.50030 /UG_TITLE=ESTs BE101066 leucine rich repeat and fibronectin type III domain containing 3 Lrfn3 308495 NM_001107502 0007155 // cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1384541_at BM391441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391441 /DB_XREF=gi:18191494 /DB_XREF=UI-R-DY0-ckr-g-09-0-UI.s1 /CLONE=UI-R-DY0-ckr-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.50531.1 /TIER=ConsEnd /STK=0 /UG=Rn.50531 /UG_TITLE=ESTs BM391441 hyaluronan and proteoglycan link protein 1 Hapln1 29331 NM_019189 0007155 // cell adhesion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0031012 // extracellular matrix // not recorded 0005198 // structural molecule activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // traceable author statement /// 0005540 // hyaluronic acid binding // inferred from electronic annotation 1384542_at BE103021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103021 /DB_XREF=gi:8495120 /DB_XREF=UI-R-BT1-aqr-d-07-0-UI.s1 /CLONE=UI-R-BT1-aqr-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.6509.1 /TIER=ConsEnd /STK=0 /UG=Rn.6509 /UG_TITLE=ESTs BE103021 1384543_at BF406553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406553 /DB_XREF=gi:11394528 /DB_XREF=UI-R-BJ2-bpu-d-04-0-UI.s1 /CLONE=UI-R-BJ2-bpu-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.66118.1 /TIER=ConsEnd /STK=0 /UG=Rn.66118 /UG_TITLE=ESTs BF406553 1384544_at BM385409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385409 /DB_XREF=gi:18185462 /DB_XREF=UI-R-CN1-clv-n-05-0-UI.s1 /CLONE=UI-R-CN1-clv-n-05-0-UI /FEA=EST /CNT=2 /TID=Rn.16469.1 /TIER=ConsEnd /STK=0 /UG=Rn.16469 /UG_TITLE=ESTs BM385409 paraoxonase 3 Pon3 312086 NM_001004086 0019439 // aromatic compound catabolic process // inferred from electronic annotation /// 0019439 // aromatic compound catabolic process // not recorded /// 0046395 // carboxylic acid catabolic process // inferred from electronic annotation /// 0046395 // carboxylic acid catabolic process // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay 0004063 // aryldialkylphosphatase activity // inferred from direct assay /// 0004064 // arylesterase activity // inferred from electronic annotation /// 0004064 // arylesterase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1384545_at AA926021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926021 /DB_XREF=gi:4237212 /DB_XREF=UI-R-A1-es-d-09-0-UI.s1 /CLONE=UI-R-A1-es-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.3043.1 /TIER=ConsEnd /STK=0 /UG=Rn.3043 /UG_TITLE=ESTs AA926021 1384546_at AA924204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924204 /DB_XREF=gi:4234344 /DB_XREF=UI-R-A1-dx-a-09-0-UI.s1 /CLONE=UI-R-A1-dx-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.23057.1 /TIER=ConsEnd /STK=0 /UG=Rn.23057 /UG_TITLE=ESTs AA924204 1384547_at AI070639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070639 /DB_XREF=gi:3396890 /DB_XREF=UI-R-C2-mv-g-07-0-UI.s1 /CLONE=UI-R-C2-mv-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.19810.1 /TIER=ConsEnd /STK=0 /UG=Rn.19810 /UG_TITLE=ESTs, Highly similar to S17447 probable ligand-binding protein RY2G5 - rat (R.norvegicus) AI070639 potential ligand-binding protein RY2G5 499925 NM_001109209 /// XM_001063904 /// XM_575269 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0008289 // lipid binding // inferred from electronic annotation 1384548_at BM388159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388159 /DB_XREF=gi:18188212 /DB_XREF=UI-R-DM1-cjz-c-23-0-UI.s1 /CLONE=UI-R-DM1-cjz-c-23-0-UI /FEA=EST /CNT=2 /TID=Rn.81487.1 /TIER=ConsEnd /STK=0 /UG=Rn.81487 /UG_TITLE=ESTs BM388159 ribosomal protein L32 /// ribosomal protein L32, pseudogene 3 Rpl32 /// Rpl32-ps3 100361730 /// 28298 NM_013226 /// XM_002726850 /// XM_002729744 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384549_at BI292428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292428 /DB_XREF=gi:14952915 /DB_XREF=UI-R-DN0-civ-f-24-0-UI.s1 /CLONE=UI-R-DN0-civ-f-24-0-UI /FEA=EST /CNT=2 /TID=Rn.20200.1 /TIER=ConsEnd /STK=0 /UG=Rn.20200 /UG_TITLE=ESTs BI292428 1384550_at AW917943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917943 /DB_XREF=gi:8083707 /DB_XREF=EST349247 /CLONE=RGIEK42 /FEA=EST /CNT=2 /TID=Rn.12981.2 /TIER=ConsEnd /STK=0 /UG=Rn.12981 /UG_TITLE=ESTs AW917943 similar to RIKEN cDNA 1810030O07 RGD1565685 317344 NM_001126286 1384551_at AI578134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578134 /DB_XREF=gi:4562510 /DB_XREF=UI-R-Y0-uw-b-07-0-UI.s2 /CLONE=UI-R-Y0-uw-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.38475.1 /TIER=ConsEnd /STK=0 /UG=Rn.38475 /UG_TITLE=ESTs, Weakly similar to IMB3_HUMAN IMPORTIN BETA-3 SUBUNIT (H.sapiens) AI578134 RAN binding protein 6 Ranbp6 309326 NM_001107584 0005488 // binding // inferred from electronic annotation 1384552_at AI104480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104480 /DB_XREF=gi:3708827 /DB_XREF=EST213769 /CLONE=RHECE04 /FEA=EST /CNT=2 /TID=Rn.22811.2 /TIER=ConsEnd /STK=0 /UG=Rn.22811 /UG_TITLE=ESTs AI104480 1384553_at BE118056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118056 /DB_XREF=gi:8510161 /DB_XREF=UI-R-BS1-azn-b-09-0-UI.s1 /CLONE=UI-R-BS1-azn-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.38872.2 /TIER=ConsEnd /STK=0 /UG=Rn.38872 /UG_TITLE=ESTs BE118056 N(alpha)-acetyltransferase 25, NatB auxiliary subunit Naa25 360811 NM_001047900 0005737 // cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384554_at AI058725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058725 /DB_XREF=gi:3332502 /DB_XREF=UI-R-C1-kp-b-03-0-UI.s1 /CLONE=UI-R-C1-kp-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.18965.1 /TIER=ConsEnd /STK=0 /UG=Rn.18965 /UG_TITLE=ESTs AI058725 1384555_at BF416764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416764 /DB_XREF=gi:11404753 /DB_XREF=UI-R-CN0-bkz-f-09-0-UI.s1 /CLONE=UI-R-CN0-bkz-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.34797.1 /TIER=ConsEnd /STK=0 /UG=Rn.34797 /UG_TITLE=ESTs BF416764 hypothetical LOC363326 LOC363326 363326 NM_001126289 1384556_at AI511244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511244 /DB_XREF=gi:4416943 /DB_XREF=UI-R-C3-sg-g-11-0-UI.s1 /CLONE=UI-R-C3-sg-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.9524.1 /TIER=ConsEnd /STK=0 /UG=Rn.9524 /UG_TITLE=ESTs AI511244 ATPase, class V, type 10A Atp10a 365266 NM_001141935 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0015914 // phospholipid transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004012 // phospholipid-translocating ATPase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1384557_at AI136444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136444 /DB_XREF=gi:3637221 /DB_XREF=UI-R-C2p-ns-d-10-0-UI.s1 /CLONE=UI-R-C2p-ns-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.6757.2 /TIER=ConsEnd /STK=0 /UG=Rn.6757 /UG_TITLE=ESTs AI136444 1384558_at BI276313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276313 /DB_XREF=gi:14921087 /DB_XREF=UI-R-CW0-bwo-f-08-0-UI.s1 /CLONE=UI-R-CW0-bwo-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.17555.1 /TIER=ConsEnd /STK=0 /UG=Rn.17555 /UG_TITLE=ESTs BI276313 placenta-specific 9 Plac9 361105 NM_001108395 1384559_at AI072542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072542 /DB_XREF=gi:3398736 /DB_XREF=UI-R-C2-ni-e-07-0-UI.s1 /CLONE=UI-R-C2-ni-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.17941.1 /TIER=ConsEnd /STK=0 /UG=Rn.17941 /UG_TITLE=ESTs, Weakly similar to PMX1 MOUSE PAIRED MESODERM HOMEOBOX PROTEIN 1 (R.norvegicus) AI072542 placenta specific homeobox 1 Psx1 296535 XM_001076864 /// XM_231064 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1384560_x_at AI072542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072542 /DB_XREF=gi:3398736 /DB_XREF=UI-R-C2-ni-e-07-0-UI.s1 /CLONE=UI-R-C2-ni-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.17941.1 /TIER=ConsEnd /STK=0 /UG=Rn.17941 /UG_TITLE=ESTs, Weakly similar to PMX1 MOUSE PAIRED MESODERM HOMEOBOX PROTEIN 1 (R.norvegicus) AI072542 placenta specific homeobox 1 Psx1 296535 XM_001076864 /// XM_231064 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1384561_at BM390809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390809 /DB_XREF=gi:18190862 /DB_XREF=UI-R-CN1-cjo-f-20-0-UI.s1 /CLONE=UI-R-CN1-cjo-f-20-0-UI /FEA=EST /CNT=2 /TID=Rn.7946.1 /TIER=ConsEnd /STK=0 /UG=Rn.7946 /UG_TITLE=ESTs BM390809 1384562_at AI071755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071755 /DB_XREF=gi:3397970 /DB_XREF=UI-R-C2-nj-c-06-0-UI.s1 /CLONE=UI-R-C2-nj-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.20622.2 /TIER=ConsEnd /STK=0 /UG=Rn.20622 /UG_TITLE=ESTs AI071755 1384563_at AA963343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963343 /DB_XREF=gi:4278267 /DB_XREF=UI-R-E1-ga-e-11-0-UI.s1 /CLONE=UI-R-E1-ga-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.11446.1 /TIER=ConsEnd /STK=0 /UG=Rn.11446 /UG_TITLE=ESTs AA963343 1384564_at AA925673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925673 /DB_XREF=gi:4236864 /DB_XREF=UI-R-A1-er-c-05-0-UI.s1 /CLONE=UI-R-A1-er-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.15572.1 /TIER=ConsEnd /STK=0 /UG=Rn.15572 /UG_TITLE=ESTs AA925673 family with sequence similarity 159, member B Fam159b 499520 XM_001072885 /// XM_574844 1384565_at BM387706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387706 /DB_XREF=gi:18187759 /DB_XREF=UI-R-CN1-cjj-h-20-0-UI.s1 /CLONE=UI-R-CN1-cjj-h-20-0-UI /FEA=EST /CNT=2 /TID=Rn.32795.2 /TIER=ConsEnd /STK=0 /UG=Rn.32795 /UG_TITLE=ESTs BM387706 1384566_at AF127038 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF127038 /DB_XREF=gi:4544545 /DB_XREF=AF127038 /FEA=EST /CNT=2 /TID=Rn.12632.1 /TIER=ConsEnd /STK=0 /UG=Rn.12632 /UG_TITLE=ESTs AF127038 1384567_at AI045269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045269 /DB_XREF=gi:3292088 /DB_XREF=UI-R-C1-ju-a-04-0-UI.s1 /CLONE=UI-R-C1-ju-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.16168.1 /TIER=ConsEnd /STK=0 /UG=Rn.16168 /UG_TITLE=ESTs AI045269 1384568_at BM382878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM382878 /DB_XREF=gi:18182931 /DB_XREF=UI-R-BT1-bko-h-09-0-UI.s1 /CLONE=UI-R-BT1-bko-h-09-0-UI /FEA=EST /CNT=5 /TID=Rn.47212.1 /TIER=ConsEnd /STK=4 /UG=Rn.47212 /UG_TITLE=ESTs BM382878 heat shock protein, alpha-crystallin-related, B9 Hspb9 363681 NM_001108835 0006950 // response to stress // inferred from electronic annotation 0005515 // protein binding // not recorded 1384569_at BF548417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548417 /DB_XREF=gi:11639524 /DB_XREF=UI-R-C0-hy-d-08-0-UI.r1 /CLONE=UI-R-C0-hy-d-08-0-UI /FEA=EST /CNT=5 /TID=Rn.12254.1 /TIER=ConsEnd /STK=4 /UG=Rn.12254 /UG_TITLE=ESTs BF548417 1384570_at BI296108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296108 /DB_XREF=gi:14960219 /DB_XREF=UI-R-DK0-cew-d-11-0-UI.s1 /CLONE=UI-R-DK0-cew-d-11-0-UI /FEA=EST /CNT=4 /TID=Rn.78877.1 /TIER=ConsEnd /STK=4 /UG=Rn.78877 /UG_TITLE=ESTs BI296108 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4 Plekha4 308584 NM_199101 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0008289 // lipid binding // inferred from electronic annotation 1384571_at BF398835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398835 /DB_XREF=gi:11383836 /DB_XREF=UI-R-CA1-biz-k-13-0-UI.s1 /CLONE=UI-R-CA1-biz-k-13-0-UI /FEA=EST /CNT=4 /TID=Rn.60850.1 /TIER=ConsEnd /STK=4 /UG=Rn.60850 /UG_TITLE=ESTs BF398835 1384572_at AI716028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716028 /DB_XREF=gi:5033281 /DB_XREF=UI-R-Y0-acd-b-09-0-UI.s1 /CLONE=UI-R-Y0-acd-b-09-0-UI /FEA=EST /CNT=4 /TID=Rn.21291.1 /TIER=ConsEnd /STK=4 /UG=Rn.21291 /UG_TITLE=ESTs AI716028 1384573_at BE108853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108853 /DB_XREF=gi:8500958 /DB_XREF=UI-R-BS1-ayz-b-08-0-UI.s1 /CLONE=UI-R-BS1-ayz-b-08-0-UI /FEA=EST /CNT=4 /TID=Rn.51433.2 /TIER=ConsEnd /STK=4 /UG=Rn.51433 /UG_TITLE=ESTs, Moderately similar to PAP_HUMAN Poly(A) polymerase alpha (PAP) (Polynucleotide adenylyltransferase alpha) (Fragment) (H.sapiens) BE108853 poly (A) polymerase alpha Papola 314417 NM_001108056 0006350 // transcription // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0031123 // RNA 3'-end processing // inferred from electronic annotation /// 0043631 // RNA polyadenylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0004652 // polynucleotide adenylyltransferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1384574_at AI502627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502627 /DB_XREF=gi:4400478 /DB_XREF=UI-R-C1-kx-g-10-0-UI.s1 /CLONE=UI-R-C1-kx-g-10-0-UI /FEA=EST /CNT=4 /TID=Rn.19216.1 /TIER=ConsEnd /STK=3 /UG=Rn.19216 /UG_TITLE=ESTs AI502627 1384575_at AI137418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137418 /DB_XREF=gi:3638195 /DB_XREF=UI-R-C2p-ok-c-09-0-UI.s1 /CLONE=UI-R-C2p-ok-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.22172.1 /TIER=ConsEnd /STK=3 /UG=Rn.22172 /UG_TITLE=ESTs AI137418 1384576_at AI716630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716630 /DB_XREF=gi:5033886 /DB_XREF=UI-R-Y0-acc-d-06-0-UI.s1 /CLONE=UI-R-Y0-acc-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.23604.2 /TIER=ConsEnd /STK=3 /UG=Rn.23604 /UG_TITLE=ESTs AI716630 1384577_at BF563765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563765 /DB_XREF=gi:11673495 /DB_XREF=UI-R-BT1-aks-a-05-0-UI.r1 /CLONE=UI-R-BT1-aks-a-05-0-UI /FEA=EST /CNT=4 /TID=Rn.47233.1 /TIER=ConsEnd /STK=3 /UG=Rn.47233 /UG_TITLE=ESTs, Weakly similar to COXM MOUSE CYTOCHROME C OXIDASE POLYPEPTIDE VIIB PRECURSOR (M.musculus) BF563765 rCG57154-like LOC100361960 100361960 XM_002724962 /// XM_002728101 0005746 // mitochondrial respiratory chain // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation 1384578_at AW529619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529619 /DB_XREF=gi:7172033 /DB_XREF=UI-R-BT1-akn-d-02-0-UI.s1 /CLONE=UI-R-BT1-akn-d-02-0-UI /FEA=EST /CNT=4 /TID=Rn.49152.1 /TIER=ConsEnd /STK=3 /UG=Rn.49152 /UG_TITLE=ESTs, Weakly similar to UBIQUITIN-LIKE PROTEIN GDX (M.musculus) AW529619 hypothetical protein LOC684560 LOC684560 684560 XM_001070979 /// XM_002729115 1384579_at AA901191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901191 /DB_XREF=gi:4233692 /DB_XREF=UI-R-E0-dc-h-06-0-UI.s1 /CLONE=UI-R-E0-dc-h-06-0-UI /FEA=EST /CNT=4 /TID=Rn.5835.1 /TIER=ConsEnd /STK=3 /UG=Rn.5835 /UG_TITLE=ESTs AA901191 1384580_at AI045191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045191 /DB_XREF=gi:3292010 /DB_XREF=UI-R-C1-ju-b-09-0-UI.s1 /CLONE=UI-R-C1-ju-b-09-0-UI /FEA=EST /CNT=4 /TID=Rn.16145.1 /TIER=ConsEnd /STK=3 /UG=Rn.16145 /UG_TITLE=ESTs, Weakly similar to FSPO RAT F-SPONDIN PRECURSOR (R.norvegicus) AI045191 complement component 6 C6 24237 NM_176074 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001970 // positive regulation of activation of membrane attack complex // not recorded /// 0006917 // induction of apoptosis // inferred from mutant phenotype /// 0006919 // activation of caspase activity // inferred from mutant phenotype /// 0006958 // complement activation, classical pathway // traceable author statement /// 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0019835 // cytolysis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0045087 // innate immune response // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0045917 // positive regulation of complement activation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005579 // membrane attack complex // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384581_at BI850151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI850151 /DB_XREF=gi:16003638 /DB_XREF=imageqc_10_2000slz466bdff41.x1 /CLONE=IMAGE:4197546 /FEA=EST /CNT=3 /TID=Rn.65615.1 /TIER=ConsEnd /STK=3 /UG=Rn.65615 /UG_TITLE=ESTs BI850151 actin, gamma 1 Actg1 287876 NM_001127449 0007409 // axonogenesis // inferred from direct assay /// 0045214 // sarcomere organization // not recorded /// 0051592 // response to calcium ion // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0030016 // myofibril // not recorded /// 0030424 // axon // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0031941 // filamentous actin // not recorded /// 0035267 // NuA4 histone acetyltransferase complex // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0070688 // MLL5-L complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0050998 // nitric-oxide synthase binding // inferred from electronic annotation 1384582_at BE107130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107130 /DB_XREF=gi:8499235 /DB_XREF=UI-R-BS1-ayq-b-11-0-UI.s1 /CLONE=UI-R-BS1-ayq-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.52952.1 /TIER=ConsEnd /STK=3 /UG=Rn.52952 /UG_TITLE=ESTs BE107130 1384583_at BM389858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389858 /DB_XREF=gi:18189916 /DB_XREF=UI-R-CN1-cji-b-12-0-UI.s1 /CLONE=UI-R-CN1-cji-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.81962.1 /TIER=ConsEnd /STK=3 /UG=Rn.81962 /UG_TITLE=ESTs BM389858 submandibular gland protein C Smgc 446171 NM_001004449 0005576 // extracellular region // traceable author statement 1384584_at AA892774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892774 /DB_XREF=gi:3019653 /DB_XREF=EST196577 /CLONE=RKIAX17 /FEA=EST /CNT=3 /TID=Rn.14792.1 /TIER=ConsEnd /STK=3 /UG=Rn.14792 /UG_TITLE=ESTs AA892774 1384585_at BI279337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279337 /DB_XREF=gi:14927056 /DB_XREF=UI-R-DA0-byn-b-09-0-UI.s1 /CLONE=UI-R-DA0-byn-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.77923.1 /TIER=ConsEnd /STK=3 /UG=Rn.77923 /UG_TITLE=ESTs, Moderately similar to A42817 proline-rich protein precursor - rat (R.norvegicus) BI279337 similar to Acidic proline-rich protein PRP25 precursor LOC690418 690418 XM_001074403 1384586_x_at BI279337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279337 /DB_XREF=gi:14927056 /DB_XREF=UI-R-DA0-byn-b-09-0-UI.s1 /CLONE=UI-R-DA0-byn-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.77923.1 /TIER=ConsEnd /STK=3 /UG=Rn.77923 /UG_TITLE=ESTs, Moderately similar to A42817 proline-rich protein precursor - rat (R.norvegicus) BI279337 similar to Acidic proline-rich protein PRP25 precursor LOC690418 690418 XM_001074403 1384587_at BE109132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109132 /DB_XREF=gi:8501237 /DB_XREF=UI-R-BS1-azb-c-11-0-UI.s1 /CLONE=UI-R-BS1-azb-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.51677.1 /TIER=ConsEnd /STK=3 /UG=Rn.51677 /UG_TITLE=ESTs BE109132 1384588_at BI295602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295602 /DB_XREF=gi:14959215 /DB_XREF=UI-R-DK0-cek.1-c-12-0-UI.s2 /CLONE=UI-R-DK0-cek.1-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.79724.1 /TIER=ConsEnd /STK=3 /UG=Rn.79724 /UG_TITLE=ESTs BI295602 N-acetyltransferase 11 Nat11 361718 NM_001108518 0008152 // metabolic process // inferred from electronic annotation 0008080 // N-acetyltransferase activity // inferred from electronic annotation 1384589_at BF401682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401682 /DB_XREF=gi:11389657 /DB_XREF=UI-R-CA0-bgn-d-10-0-UI.s1 /CLONE=UI-R-CA0-bgn-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.51257.1 /TIER=ConsEnd /STK=3 /UG=Rn.51257 /UG_TITLE=ESTs BF401682 spermatogenesis associated 2-like Spata2L 498963 NM_001109133 1384590_at AA957900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957900 /DB_XREF=gi:4277790 /DB_XREF=UI-R-E1-fv-a-12-0-UI.s1 /CLONE=UI-R-E1-fv-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.22064.1 /TIER=ConsEnd /STK=3 /UG=Rn.22064 /UG_TITLE=ESTs AA957900 1384591_at BG374055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374055 /DB_XREF=gi:13298527 /DB_XREF=UI-R-CV1-bsl-h-09-0-UI.s1 /CLONE=UI-R-CV1-bsl-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.66181.1 /TIER=ConsEnd /STK=3 /UG=Rn.66181 /UG_TITLE=ESTs BG374055 platelet endothelial aggregation receptor 1 Pear1 295293 NM_001134959 1384592_at AI044572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044572 /DB_XREF=gi:3291433 /DB_XREF=UI-R-C1-jw-d-05-0-UI.s1 /CLONE=UI-R-C1-jw-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.15952.1 /TIER=ConsEnd /STK=3 /UG=Rn.15952 /UG_TITLE=ESTs AI044572 1384593_at AA957799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957799 /DB_XREF=gi:4277689 /DB_XREF=UI-R-E1-fv-h-09-0-UI.s1 /CLONE=UI-R-E1-fv-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.9396.1 /TIER=ConsEnd /STK=3 /UG=Rn.9396 /UG_TITLE=ESTs AA957799 1384594_at BE106366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106366 /DB_XREF=gi:8498468 /DB_XREF=UI-R-BT1-asv-b-05-0-UI.s1 /CLONE=UI-R-BT1-asv-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.47513.1 /TIER=ConsEnd /STK=3 /UG=Rn.47513 /UG_TITLE=ESTs, Moderately similar to LEUKOCYTE TYROSINE KINASE RECEPTOR PRECURSOR (M.musculus) BE106366 leukocyte receptor tyrosine kinase Ltk 311337 NM_001107763 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1384595_at AI030888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030888 /DB_XREF=gi:3248714 /DB_XREF=UI-R-C0-jf-a-07-0-UI.s1 /CLONE=UI-R-C0-jf-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.18631.1 /TIER=ConsEnd /STK=3 /UG=Rn.18631 /UG_TITLE=ESTs AI030888 1384596_at AI073013 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073013 /DB_XREF=gi:3399207 /DB_XREF=UI-R-Y0-md-d-11-0-UI.s1 /CLONE=UI-R-Y0-md-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.20303.1 /TIER=ConsEnd /STK=3 /UG=Rn.20303 /UG_TITLE=ESTs AI073013 1384597_at AI502559 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502559 /DB_XREF=gi:4400410 /DB_XREF=UI-R-C2-ni-a-01-0-UI.s1 /CLONE=UI-R-C2-ni-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.20173.1 /TIER=ConsEnd /STK=3 /UG=Rn.20173 /UG_TITLE=ESTs AI502559 1384598_at AA894105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894105 /DB_XREF=gi:3020984 /DB_XREF=EST197908 /CLONE=RSPAQ84 /FEA=EST /CNT=3 /TID=Rn.3739.1 /TIER=ConsEnd /STK=3 /UG=Rn.3739 /UG_TITLE=ESTs AA894105 1384599_at AI059060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059060 /DB_XREF=gi:3332837 /DB_XREF=UI-R-C1-ks-d-12-0-UI.s1 /CLONE=UI-R-C1-ks-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.18817.1 /TIER=ConsEnd /STK=3 /UG=Rn.18817 /UG_TITLE=ESTs AI059060 1384600_at AI070374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070374 /DB_XREF=gi:3396625 /DB_XREF=UI-R-Y0-lt-c-07-0-UI.s1 /CLONE=UI-R-Y0-lt-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.21296.1 /TIER=ConsEnd /STK=3 /UG=Rn.21296 /UG_TITLE=ESTs AI070374 1384601_at AI112177 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112177 /DB_XREF=gi:3512126 /DB_XREF=UI-R-Y0-ml-e-12-0-UI.s1 /CLONE=UI-R-Y0-ml-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.23586.1 /TIER=ConsEnd /STK=3 /UG=Rn.23586 /UG_TITLE=ESTs, Moderately similar to CC4H_HUMAN CDC4-LIKE PROTEIN (H.sapiens) AI112177 LPS-responsive vesicle trafficking, beach and anchor containing Lrba 361975 NM_001108555 0005764 // lysosome // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005802 // trans-Golgi network // not recorded /// 0005886 // plasma membrane // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384602_at AA943768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943768 /DB_XREF=gi:3103684 /DB_XREF=EST199267 /CLONE=RBRAP46 /FEA=EST /CNT=3 /TID=Rn.7525.1 /TIER=ConsEnd /STK=3 /UG=Rn.7525 /UG_TITLE=ESTs, Weakly similar to T15514 hypothetical protein C15H9.5 - Caenorhabditis elegans (C.elegans) AA943768 G protein-coupled receptor 107 Gpr107 311857 NM_001107828 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1384603_at AI602131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602131 /DB_XREF=gi:4611292 /DB_XREF=UI-R-Y0-vb-e-02-0-UI.s2 /CLONE=UI-R-Y0-vb-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.40415.1 /TIER=ConsEnd /STK=3 /UG=Rn.40415 /UG_TITLE=ESTs, Weakly similar to ABC1 MOUSE ATP-BINDING CASSETTE, SUB-FAMILY A, MEMBER 1 (M.musculus) AI602131 ATP-binding cassette, sub-family A (ABC1), member 4 Abca4 310836 NM_001107721 0006200 // ATP catabolic process // not recorded /// 0006649 // phospholipid transfer to membrane // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0045494 // photoreceptor cell maintenance // not recorded 0005887 // integral to plasma membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004012 // phospholipid-translocating ATPase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005548 // phospholipid transporter activity // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 1384604_at BF390790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390790 /DB_XREF=gi:11375637 /DB_XREF=UI-R-CA1-bcp-e-03-0-UI.s1 /CLONE=UI-R-CA1-bcp-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.59914.1 /TIER=ConsEnd /STK=3 /UG=Rn.59914 /UG_TITLE=ESTs, Weakly similar to NECDIN (M.musculus) BF390790 1384605_at BF419162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419162 /DB_XREF=gi:11407192 /DB_XREF=UI-R-BJ2-bqo-g-11-0-UI.s1 /CLONE=UI-R-BJ2-bqo-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.36267.2 /TIER=ConsEnd /STK=3 /UG=Rn.36267 /UG_TITLE=ESTs BF419162 1384606_at AI111408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111408 /DB_XREF=gi:3511450 /DB_XREF=UI-R-Y0-mk-f-06-0-UI.s1 /CLONE=UI-R-Y0-mk-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.23615.1 /TIER=ConsEnd /STK=3 /UG=Rn.23615 /UG_TITLE=ESTs AI111408 hypothetical protein LOC100158225 LOC100158225 100158225 NM_001127606 1384607_at BE120546 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120546 /DB_XREF=gi:8512651 /DB_XREF=UI-R-CA0-bat-g-01-0-UI.s1 /CLONE=UI-R-CA0-bat-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.60050.1 /TIER=ConsEnd /STK=3 /UG=Rn.60050 /UG_TITLE=ESTs BE120546 1384608_at BF407962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407962 /DB_XREF=gi:11395937 /DB_XREF=UI-R-BJ2-bqy-c-08-0-UI.s1 /CLONE=UI-R-BJ2-bqy-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.61156.2 /TIER=ConsEnd /STK=3 /UG=Rn.61156 /UG_TITLE=ESTs BF407962 1384609_a_at AI045965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045965 /DB_XREF=gi:3290877 /DB_XREF=UI-R-C1-jt-h-05-0-UI.s1 /CLONE=UI-R-C1-jt-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.15746.2 /TIER=ConsEnd /STK=3 /UG=Rn.15746 /UG_TITLE=ESTs AI045965 family with sequence similarity 63, member B Fam63b 363089 XM_001054973 /// XM_002727085 /// XM_002729937 /// XM_343420 1384610_at AI045965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045965 /DB_XREF=gi:3290877 /DB_XREF=UI-R-C1-jt-h-05-0-UI.s1 /CLONE=UI-R-C1-jt-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.15746.2 /TIER=ConsEnd /STK=3 /UG=Rn.15746 /UG_TITLE=ESTs AI045965 family with sequence similarity 63, member B Fam63b 363089 XM_001054973 /// XM_002727085 /// XM_002729937 /// XM_343420 1384611_at AI171626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171626 /DB_XREF=gi:3711666 /DB_XREF=EST217598 /CLONE=RMUBN46 /FEA=EST /CNT=4 /TID=Rn.22365.1 /TIER=ConsEnd /STK=2 /UG=Rn.22365 /UG_TITLE=ESTs AI171626 Hypothetical protein LOC680889 LOC680889 680889 XM_001059333 1384612_at BI294391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294391 /DB_XREF=gi:14956802 /DB_XREF=UI-R-DK0-cei-c-07-0-UI.s1 /CLONE=UI-R-DK0-cei-c-07-0-UI /FEA=EST /CNT=4 /TID=Rn.78932.1 /TIER=ConsEnd /STK=2 /UG=Rn.78932 /UG_TITLE=ESTs, Highly similar to COLI RAT CORTICOTROPIN-LIPOTROPIN PRECURSOR (R.norvegicus) BI294391 proopiomelanocortin Pomc 24664 NM_139326 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007631 // feeding behavior // non-traceable author statement /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008217 // regulation of blood pressure // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0032720 // negative regulation of tumor necrosis factor production // inferred from electronic annotation /// 0032720 // negative regulation of tumor necrosis factor production // not recorded 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030141 // stored secretory granule // inferred from electronic annotation /// 0030141 // stored secretory granule // not recorded 0001664 // G-protein-coupled receptor binding // inferred from electronic annotation /// 0001664 // G-protein-coupled receptor binding // not recorded /// 0005179 // hormone activity // inferred from electronic annotation /// 0005179 // hormone activity // not recorded /// 0031781 // type 3 melanocortin receptor binding // inferred from electronic annotation /// 0031781 // type 3 melanocortin receptor binding // not recorded /// 0031782 // type 4 melanocortin receptor binding // inferred from electronic annotation /// 0031782 // type 4 melanocortin receptor binding // not recorded /// 0070996 // type 1 melanocortin receptor binding // inferred from electronic annotation /// 0070996 // type 1 melanocortin receptor binding // not recorded 1384613_at AI060035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060035 /DB_XREF=gi:3333812 /DB_XREF=UI-R-C1-kz-a-12-0-UI.s1 /CLONE=UI-R-C1-kz-a-12-0-UI /FEA=EST /CNT=4 /TID=Rn.16232.1 /TIER=ConsEnd /STK=2 /UG=Rn.16232 /UG_TITLE=ESTs AI060035 1384614_at AI169347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169347 /DB_XREF=gi:3705655 /DB_XREF=EST215189 /CLONE=RKIBR14 /FEA=EST /CNT=4 /TID=Rn.16135.1 /TIER=ConsEnd /STK=2 /UG=Rn.16135 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) AI169347 1384615_at AI071319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071319 /DB_XREF=gi:3397534 /DB_XREF=UI-R-C1-ko-f-02-0-UI.s2 /CLONE=UI-R-C1-ko-f-02-0-UI /FEA=EST /CNT=4 /TID=Rn.18888.1 /TIER=ConsEnd /STK=2 /UG=Rn.18888 /UG_TITLE=ESTs AI071319 LUC7-like 3 (S. cerevisiae) Luc7l3 360602 NM_001108291 0006915 // apoptosis // not recorded /// 0006950 // response to stress // not recorded /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // not recorded 0003729 // mRNA binding // not recorded /// 0005515 // protein binding // not recorded 1384616_at AW523666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523666 /DB_XREF=gi:7166051 /DB_XREF=UI-R-BO0-aic-g-05-0-UI.s1 /CLONE=UI-R-BO0-aic-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.45707.1 /TIER=ConsEnd /STK=2 /UG=Rn.45707 /UG_TITLE=ESTs, Highly similar to T00363 hypothetical protein KIAA0674 (H.sapiens) AW523666 FK506 binding protein 15 Fkbp15 362528 XM_001057312 /// XM_342846 0006457 // protein folding // inferred from electronic annotation 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005884 // actin filament // not recorded /// 0030424 // axon // not recorded /// 0030426 // growth cone // not recorded 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation 1384617_at AI385260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385260 /DB_XREF=gi:4198042 /DB_XREF=UI-R-C2-mw-a-04-0-UI.s2 /CLONE=UI-R-C2-mw-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.20514.1 /TIER=ConsEnd /STK=2 /UG=Rn.20514 /UG_TITLE=ESTs, Weakly similar to T17290 hypothetical protein DKFZp434B172.1 (H.sapiens) AI385260 family with sequence similarity 198, member B Fam198b 310540 NM_199105 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1384618_at AA848512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848512 /DB_XREF=gi:2936052 /DB_XREF=EST191272 /CLONE=RKIAC76 /FEA=EST /CNT=3 /TID=Rn.3914.1 /TIER=ConsEnd /STK=2 /UG=Rn.3914 /UG_TITLE=ESTs AA848512 1384619_at AA858492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858492 /DB_XREF=gi:4229825 /DB_XREF=UI-R-E0-bo-b-12-0-UI.s1 /CLONE=UI-R-E0-bo-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.17022.1 /TIER=ConsEnd /STK=2 /UG=Rn.17022 /UG_TITLE=ESTs AA858492 1384620_at AI716355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716355 /DB_XREF=gi:5033608 /DB_XREF=UI-R-Y0-aby-h-11-0-UI.s1 /CLONE=UI-R-Y0-aby-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.20327.1 /TIER=ConsEnd /STK=2 /UG=Rn.20327 /UG_TITLE=ESTs AI716355 1384621_at AA924327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924327 /DB_XREF=gi:4234467 /DB_XREF=UI-R-A1-dr-a-01-0-UI.s3 /CLONE=UI-R-A1-dr-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.8318.1 /TIER=ConsEnd /STK=2 /UG=Rn.8318 /UG_TITLE=ESTs AA924327 1384622_at AI136557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136557 /DB_XREF=gi:3637334 /DB_XREF=UI-R-C2p-nw-d-01-0-UI.s1 /CLONE=UI-R-C2p-nw-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.23684.1 /TIER=ConsEnd /STK=2 /UG=Rn.23684 /UG_TITLE=ESTs AI136557 Similar to chromosome 10 open reading frame 4; similar to putative acid phosphatase F26C11.1 RGD1309482 365458 NM_001014246 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384623_at AA924613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924613 /DB_XREF=gi:4235804 /DB_XREF=UI-R-A1-ea-h-01-0-UI.s1 /CLONE=UI-R-A1-ea-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.15354.1 /TIER=ConsEnd /STK=2 /UG=Rn.15354 /UG_TITLE=ESTs AA924613 ATP-binding cassette, sub-family A (ABC1), member 8 Abca8 303637 XM_001081601 /// XM_221074 0006810 // transport // not recorded 0005743 // mitochondrial inner membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // not recorded 1384624_at AI233317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233317 /DB_XREF=gi:3817197 /DB_XREF=EST230005 /CLONE=RKIDD56 /FEA=EST /CNT=3 /TID=Rn.44000.1 /TIER=ConsEnd /STK=2 /UG=Rn.44000 /UG_TITLE=ESTs AI233317 1384625_at BF408700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408700 /DB_XREF=gi:11396675 /DB_XREF=UI-R-BT1-bnf-a-04-0-UI.s1 /CLONE=UI-R-BT1-bnf-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.46316.1 /TIER=ConsEnd /STK=2 /UG=Rn.46316 /UG_TITLE=ESTs BF408700 similar to RIKEN cDNA 2410116G06 RGD1306224 366244 XM_002726292 /// XM_002729247 1384626_at AI716819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716819 /DB_XREF=gi:5034075 /DB_XREF=UI-R-Y0-acg-e-08-0-UI.s1 /CLONE=UI-R-Y0-acg-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.21855.1 /TIER=ConsEnd /STK=2 /UG=Rn.21855 /UG_TITLE=ESTs AI716819 1384627_at AI598322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598322 /DB_XREF=gi:4607370 /DB_XREF=EST250025 /CLONE=REMDO15 /FEA=EST /CNT=3 /TID=Rn.24526.1 /TIER=ConsEnd /STK=2 /UG=Rn.24526 /UG_TITLE=ESTs AI598322 keratin associated protein 13-2 Krtap13-2 501765 NM_001109325 1384628_at AI549292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549292 /DB_XREF=gi:4466780 /DB_XREF=UI-R-C3-tx-h-10-0-UI.s1 /CLONE=UI-R-C3-tx-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.34836.1 /TIER=ConsEnd /STK=2 /UG=Rn.34836 /UG_TITLE=ESTs, Weakly similar to C02C2.5.p (Caenorhabditis elegans) (C.elegans) AI549292 iodotyrosine deiodinase Iyd 308129 NM_001025000 0008152 // metabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004447 // iodide peroxidase activity // inferred from electronic annotation /// 0004447 // iodide peroxidase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1384629_at AI071533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071533 /DB_XREF=gi:3397748 /DB_XREF=UI-R-C1-ky-b-07-0-UI.s2 /CLONE=UI-R-C1-ky-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.23843.2 /TIER=ConsEnd /STK=2 /UG=Rn.23843 /UG_TITLE=ESTs AI071533 SIVA1, apoptosis-inducing factor Siva1 362791 NM_001100982 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006924 // activation-induced cell death of T cells // inferred from electronic annotation /// 0006924 // activation-induced cell death of T cells // not recorded /// 0007165 // signal transduction // not recorded /// 0008635 // activation of caspase activity by cytochrome c // inferred from electronic annotation /// 0008635 // activation of caspase activity by cytochrome c // not recorded /// 0019987 // negative regulation of anti-apoptosis // inferred from electronic annotation /// 0019987 // negative regulation of anti-apoptosis // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0001618 // viral receptor activity // inferred from electronic annotation /// 0001618 // viral receptor activity // not recorded /// 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005164 // tumor necrosis factor receptor binding // not recorded /// 0005175 // CD27 receptor binding // inferred from electronic annotation /// 0005175 // CD27 receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0008656 // caspase activator activity // inferred from electronic annotation /// 0008656 // caspase activator activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1384630_at AI229071 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229071 /DB_XREF=gi:3812958 /DB_XREF=EST225766 /CLONE=RBRDD62 /FEA=EST /CNT=3 /TID=Rn.7499.1 /TIER=ConsEnd /STK=2 /UG=Rn.7499 /UG_TITLE=ESTs AI229071 1384631_at AI029762 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029762 /DB_XREF=gi:4300798 /DB_XREF=UI-R-C0-iz-a-04-0-UI.s1 /CLONE=UI-R-C0-iz-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.23784.1 /TIER=ConsEnd /STK=2 /UG=Rn.23784 /UG_TITLE=ESTs AI029762 1384632_at AI071717 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071717 /DB_XREF=gi:3397932 /DB_XREF=UI-R-C2-nc-f-09-0-UI.s1 /CLONE=UI-R-C2-nc-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.23846.1 /TIER=ConsEnd /STK=2 /UG=Rn.23846 /UG_TITLE=ESTs, Highly similar to S71429 phosphofructokinase, muscle - rat (R.norvegicus) AI071717 phosphofructokinase, muscle Pfkm 65152 NM_031715 0001678 // cellular glucose homeostasis // non-traceable author statement /// 0006002 // fructose 6-phosphate metabolic process // inferred from direct assay /// 0006002 // fructose 6-phosphate metabolic process // not recorded /// 0006002 // fructose 6-phosphate metabolic process // inferred from electronic annotation /// 0006096 // glycolysis // inferred from direct assay /// 0006096 // glycolysis // not recorded /// 0006096 // glycolysis // inferred from electronic annotation /// 0030388 // fructose 1,6-bisphosphate metabolic process // inferred from direct assay /// 0032024 // positive regulation of insulin secretion // inferred from electronic annotation /// 0032024 // positive regulation of insulin secretion // not recorded /// 0042593 // glucose homeostasis // not recorded /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0046716 // muscle cell homeostasis // inferred from electronic annotation /// 0046716 // muscle cell homeostasis // not recorded /// 0046835 // carbohydrate phosphorylation // not recorded /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0051259 // protein oligomerization // not recorded /// 0051289 // protein homotetramerization // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005945 // 6-phosphofructokinase complex // inferred from electronic annotation /// 0005945 // 6-phosphofructokinase complex // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003872 // 6-phosphofructokinase activity // inferred from direct assay /// 0003872 // 6-phosphofructokinase activity // not recorded /// 0003872 // 6-phosphofructokinase activity // inferred from sequence or structural similarity /// 0003872 // 6-phosphofructokinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from direct assay /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008443 // phosphofructokinase activity // inferred from mutant phenotype /// 0008443 // phosphofructokinase activity // not recorded /// 0008443 // phosphofructokinase activity // non-traceable author statement /// 0008443 // phosphofructokinase activity // inferred from electronic annotation /// 0016208 // AMP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019900 // kinase binding // inferred from electronic annotation /// 0019900 // kinase binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070061 // fructose binding // not recorded /// 0070061 // fructose binding // inferred from electronic annotation /// 0070095 // fructose-6-phosphate binding // inferred from direct assay 1384633_at AI146097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146097 /DB_XREF=gi:3667896 /DB_XREF=UI-R-E1-fb-e-03-0-UI.s1 /CLONE=UI-R-E1-fb-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.23138.1 /TIER=ConsEnd /STK=2 /UG=Rn.23138 /UG_TITLE=ESTs AI146097 1384634_at AI235340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235340 /DB_XREF=gi:3828846 /DB_XREF=EST231902 /CLONE=ROVCQ59 /FEA=EST /CNT=3 /TID=Rn.25319.1 /TIER=ConsEnd /STK=2 /UG=Rn.25319 /UG_TITLE=ESTs AI235340 1384635_at AA999112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA999112 /DB_XREF=gi:4294102 /DB_XREF=UI-R-C0-in-h-06-0-UI.s1 /CLONE=UI-R-C0-in-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.17422.1 /TIER=ConsEnd /STK=2 /UG=Rn.17422 /UG_TITLE=ESTs, Weakly similar to RENAL TRANSCRIPTION FACTOR KID-1 (R.norvegicus) AA999112 1384636_at AI043799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043799 /DB_XREF=gi:3290534 /DB_XREF=UI-R-C0-jj-b-06-0-UI.s1 /CLONE=UI-R-C0-jj-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.23238.1 /TIER=ConsEnd /STK=2 /UG=Rn.23238 /UG_TITLE=ESTs AI043799 1384637_at AW535033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535033 /DB_XREF=gi:7177447 /DB_XREF=UI-R-BS0-aoa-d-12-0-UI.s1 /CLONE=UI-R-BS0-aoa-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.43965.1 /TIER=ConsEnd /STK=2 /UG=Rn.43965 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) AW535033 1384638_at AI030545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030545 /DB_XREF=gi:3248371 /DB_XREF=UI-R-C0-ji-g-03-0-UI.s1 /CLONE=UI-R-C0-ji-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.12503.1 /TIER=ConsEnd /STK=2 /UG=Rn.12503 /UG_TITLE=ESTs AI030545 1384639_at AI070350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070350 /DB_XREF=gi:3396601 /DB_XREF=UI-R-Y0-lv-f-05-0-UI.s1 /CLONE=UI-R-Y0-lv-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.22594.1 /TIER=ConsEnd /STK=2 /UG=Rn.22594 /UG_TITLE=ESTs, Weakly similar to POLYPOSIS LOCUS PROTEIN 1 HOMOLOG (M.musculus) AI070350 receptor accessory protein 6 Reep6 362835 NM_001013218 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1384640_at AA997287 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997287 /DB_XREF=gi:4282985 /DB_XREF=UI-R-C0-hq-e-05-0-UI.s1 /CLONE=UI-R-C0-hq-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.23310.1 /TIER=ConsEnd /STK=2 /UG=Rn.23310 /UG_TITLE=ESTs AA997287 1384641_at AA957600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957600 /DB_XREF=gi:4277490 /DB_XREF=UI-R-E1-gb-b-09-0-UI.s1 /CLONE=UI-R-E1-gb-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.9588.1 /TIER=ConsEnd /STK=2 /UG=Rn.9588 /UG_TITLE=ESTs AA957600 1384642_at AI044912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044912 /DB_XREF=gi:3291731 /DB_XREF=UI-R-C1-kk-e-06-0-UI.s1 /CLONE=UI-R-C1-kk-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.18820.1 /TIER=ConsEnd /STK=2 /UG=Rn.18820 /UG_TITLE=ESTs AI044912 1384643_at AI071465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071465 /DB_XREF=gi:3397680 /DB_XREF=UI-R-C1-ku-f-05-0-UI.s2 /CLONE=UI-R-C1-ku-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.19555.1 /TIER=ConsEnd /STK=2 /UG=Rn.19555 /UG_TITLE=ESTs AI071465 1384644_at AI169061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169061 /DB_XREF=gi:3705369 /DB_XREF=EST214890 /CLONE=RKIBM53 /FEA=EST /CNT=3 /TID=Rn.23865.1 /TIER=ConsEnd /STK=2 /UG=Rn.23865 /UG_TITLE=ESTs AI169061 1384645_at AI072024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072024 /DB_XREF=gi:3398218 /DB_XREF=UI-R-C2-nd-e-08-0-UI.s1 /CLONE=UI-R-C2-nd-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.20696.1 /TIER=ConsEnd /STK=2 /UG=Rn.20696 /UG_TITLE=ESTs AI072024 tolerance-associated gene 1 Toag1 363169 NM_001110838 0005739 // mitochondrion // not recorded 1384646_at AA923898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA923898 /DB_XREF=gi:4233990 /DB_XREF=UI-R-A1-dr-b-12-0-UI.s1 /CLONE=UI-R-A1-dr-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.24933.1 /TIER=ConsEnd /STK=2 /UG=Rn.24933 /UG_TITLE=ESTs AA923898 1384647_at AI071719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071719 /DB_XREF=gi:3397934 /DB_XREF=UI-R-C2-nc-f-11-0-UI.s1 /CLONE=UI-R-C2-nc-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.22606.1 /TIER=ConsEnd /STK=2 /UG=Rn.22606 /UG_TITLE=ESTs AI071719 Rho guanine nucleotide exchange factor (GEF7) Arhgef7 114559 NM_001113521 /// NM_001113522 /// NM_053740 0006915 // apoptosis // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from direct assay /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from sequence or structural similarity /// 0043615 // astrocyte cell migration // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005925 // focal adhesion // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // traceable author statement /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1384648_at AA963844 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963844 /DB_XREF=gi:4278786 /DB_XREF=UI-R-C0-gs-g-12-0-UI.s1 /CLONE=UI-R-C0-gs-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.8041.2 /TIER=ConsEnd /STK=2 /UG=Rn.8041 /UG_TITLE=ESTs AA963844 Family with sequence similarity 164, member A Fam164a 310244 NM_001107661 1384649_at AI170778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170778 /DB_XREF=gi:3710818 /DB_XREF=EST216717 /CLONE=RMUBB39 /FEA=EST /CNT=3 /TID=Rn.43394.1 /TIER=ConsEnd /STK=2 /UG=Rn.43394 /UG_TITLE=ESTs AI170778 1384650_at AI029561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029561 /DB_XREF=gi:4299410 /DB_XREF=UI-R-C0-ix-c-08-0-UI.s1 /CLONE=UI-R-C0-ix-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.23502.1 /TIER=ConsEnd /STK=2 /UG=Rn.23502 /UG_TITLE=ESTs AI029561 1384651_at AI385295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385295 /DB_XREF=gi:4198077 /DB_XREF=UI-R-C2-mw-d-07-0-UI.s2 /CLONE=UI-R-C2-mw-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.34305.1 /TIER=ConsEnd /STK=2 /UG=Rn.34305 /UG_TITLE=ESTs AI385295 1384652_at AI555485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555485 /DB_XREF=gi:4487848 /DB_XREF=UI-R-C2p-qq-h-08-0-UI.s1 /CLONE=UI-R-C2p-qq-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.15331.2 /TIER=ConsEnd /STK=2 /UG=Rn.15331 /UG_TITLE=ESTs, Weakly similar to SPBP RAT PROSTATIC SPERMINE-BINDING PROTEIN PRECURSOR (R.norvegicus) AI555485 HIV-1 Tat specific factor 1 Htatsf1 317612 NM_001108259 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384653_at AI556935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556935 /DB_XREF=gi:4489298 /DB_XREF=UI-R-C2p-rp-f-10-0-UI.s1 /CLONE=UI-R-C2p-rp-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.27284.1 /TIER=ConsEnd /STK=2 /UG=Rn.27284 /UG_TITLE=ESTs AI556935 similar to melanoma ubiquitous mutated protein LOC690082 690082 XM_001073181 /// XM_002727495 1384654_at AI113214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113214 /DB_XREF=gi:3513163 /DB_XREF=UI-R-C2p-np-h-05-0-UI.s1 /CLONE=UI-R-C2p-np-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.23644.1 /TIER=ConsEnd /STK=2 /UG=Rn.23644 /UG_TITLE=ESTs AI113214 1384655_at AW142820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142820 /DB_XREF=gi:6162719 /DB_XREF=EST293074 /CLONE=RGIAW35 /FEA=EST /CNT=3 /TID=Rn.7602.1 /TIER=ConsEnd /STK=2 /UG=Rn.7602 /UG_TITLE=ESTs AW142820 kin of IRRE like 3 (Drosophila) Kirrel3 315546 NM_001048215 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1384656_at AA943596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943596 /DB_XREF=gi:3103512 /DB_XREF=EST199095 /CLONE=RBRAL91 /FEA=EST /CNT=3 /TID=Rn.22976.1 /TIER=ConsEnd /STK=2 /UG=Rn.22976 /UG_TITLE=ESTs AA943596 1384657_at AI071532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071532 /DB_XREF=gi:3397747 /DB_XREF=UI-R-C1-ky-b-06-0-UI.s2 /CLONE=UI-R-C1-ky-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.18923.1 /TIER=ConsEnd /STK=2 /UG=Rn.18923 /UG_TITLE=ESTs AI071532 malignant fibrous histiocytoma amplified sequence 1 Mfhas1 306508 NM_001107316 0005515 // protein binding // inferred from electronic annotation 1384658_at AW530445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530445 /DB_XREF=gi:7172859 /DB_XREF=UI-R-C4-akx-b-06-0-UI.s1 /CLONE=UI-R-C4-akx-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.47453.1 /TIER=ConsEnd /STK=2 /UG=Rn.47453 /UG_TITLE=ESTs AW530445 1384659_at AI058540 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058540 /DB_XREF=gi:3332317 /DB_XREF=UI-R-C1-ku-e-05-0-UI.s1 /CLONE=UI-R-C1-ku-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.23841.1 /TIER=ConsEnd /STK=2 /UG=Rn.23841 /UG_TITLE=ESTs AI058540 1384660_at AI045790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045790 /DB_XREF=gi:3292609 /DB_XREF=UI-R-C0-jq-a-07-0-UI.s2 /CLONE=UI-R-C0-jq-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.16314.1 /TIER=ConsEnd /STK=2 /UG=Rn.16314 /UG_TITLE=ESTs AI045790 1384661_at AI072502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072502 /DB_XREF=gi:3398696 /DB_XREF=UI-R-C2-nm-h-04-0-UI.s1 /CLONE=UI-R-C2-nm-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.21777.1 /TIER=ConsEnd /STK=2 /UG=Rn.21777 /UG_TITLE=ESTs AI072502 DDB1 and CUL4 associated factor 17 Dcaf17 499807 NM_001177688 /// XM_001060141 /// XM_575147 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0080008 // CUL4 RING ubiquitin ligase complex // not recorded /// 0080008 // CUL4 RING ubiquitin ligase complex // inferred from sequence or structural similarity /// 0080008 // CUL4 RING ubiquitin ligase complex // inferred from electronic annotation 1384662_at AI030739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030739 /DB_XREF=gi:3248565 /DB_XREF=UI-R-C0-jd-d-05-0-UI.s1 /CLONE=UI-R-C0-jd-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.12289.1 /TIER=ConsEnd /STK=2 /UG=Rn.12289 /UG_TITLE=ESTs AI030739 1384663_at AI060195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060195 /DB_XREF=gi:3333972 /DB_XREF=UI-R-C1-lm-a-01-0-UI.s1 /CLONE=UI-R-C1-lm-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.22539.1 /TIER=ConsEnd /STK=2 /UG=Rn.22539 /UG_TITLE=ESTs AI060195 1384664_at AI233855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233855 /DB_XREF=gi:3817735 /DB_XREF=EST230543 /CLONE=RLUCS03 /FEA=EST /CNT=3 /TID=Rn.29651.1 /TIER=ConsEnd /STK=2 /UG=Rn.29651 /UG_TITLE=ESTs, Highly similar to PULMONARY SURFACTANT-ASSOCIATED PROTEIN B PRECURSOR (R.norvegicus) AI233855 surfactant protein B Sftpb 192155 NM_138842 0001666 // response to hypoxia // inferred from expression pattern /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033189 // response to vitamin A // inferred from expression pattern /// 0050828 // regulation of liquid surface tension // traceable author statement /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0055093 // response to hyperoxia // inferred from expression pattern /// 0070741 // response to interleukin-6 // inferred from expression pattern /// 0070848 // response to growth factor stimulus // inferred from expression pattern /// 0070849 // response to epidermal growth factor stimulus // inferred from expression pattern /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern /// 0071732 // cellular response to nitric oxide // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005771 // multivesicular body // inferred from direct assay /// 0042599 // lamellar body // inferred from direct assay 1384665_at BF549590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549590 /DB_XREF=gi:11659320 /DB_XREF=UI-R-C2-mu-c-11-0-UI.r1 /CLONE=UI-R-C2-mu-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.20511.1 /TIER=ConsEnd /STK=2 /UG=Rn.20511 /UG_TITLE=ESTs BF549590 1384666_at AI072397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072397 /DB_XREF=gi:3398591 /DB_XREF=UI-R-C2-ne-d-11-0-UI.s1 /CLONE=UI-R-C2-ne-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.20094.1 /TIER=ConsEnd /STK=2 /UG=Rn.20094 /UG_TITLE=ESTs AI072397 1384667_x_at AI385327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385327 /DB_XREF=gi:4198109 /DB_XREF=UI-R-C2-mw-g-07-0-UI.s2 /CLONE=UI-R-C2-mw-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.42861.1 /TIER=ConsEnd /STK=2 /UG=Rn.42861 /UG_TITLE=ESTs AI385327 galanin receptor 2 Galr2 29234 NM_019172 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from mutant phenotype /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0031175 // neuron projection development // inferred from electronic annotation /// 0031175 // neuron projection development // not recorded /// 0043647 // inositol phosphate metabolic process // inferred from direct assay /// 0046488 // phosphatidylinositol metabolic process // inferred from direct assay 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004966 // galanin receptor activity // inferred from direct assay /// 0004966 // galanin receptor activity // inferred from mutant phenotype /// 0004966 // galanin receptor activity // inferred from electronic annotation /// 0042923 // neuropeptide binding // inferred from direct assay /// 0042923 // neuropeptide binding // inferred from mutant phenotype 1384668_at AI070299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070299 /DB_XREF=gi:3396550 /DB_XREF=UI-R-Y0-lt-d-05-0-UI.s1 /CLONE=UI-R-Y0-lt-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.21283.1 /TIER=ConsEnd /STK=2 /UG=Rn.21283 /UG_TITLE=ESTs AI070299 1384669_at BF553125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF553125 /DB_XREF=gi:11662855 /DB_XREF=UI-R-C2-nh-h-05-0-UI.r1 /CLONE=UI-R-C2-nh-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.22012.1 /TIER=ConsEnd /STK=2 /UG=Rn.22012 /UG_TITLE=ESTs BF553125 1384670_at BF547720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547720 /DB_XREF=gi:11638827 /DB_XREF=UI-R-E0-bs-h-04-0-UI.r1 /CLONE=UI-R-E0-bs-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.26.1 /TIER=ConsEnd /STK=2 /UG=Rn.26 /UG_TITLE=ESTs BF547720 DnaJ (Hsp40) homolog, subfamily C, member 17 Dnajc17 311329 NM_001191740 /// XM_001080801 /// XM_230468 0006457 // protein folding // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1384671_at AI059958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059958 /DB_XREF=gi:3333735 /DB_XREF=UI-R-C1-la-c-01-0-UI.s1 /CLONE=UI-R-C1-la-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.37670.1 /TIER=ConsEnd /STK=2 /UG=Rn.37670 /UG_TITLE=ESTs AI059958 1384672_at AI045518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045518 /DB_XREF=gi:3292337 /DB_XREF=UI-R-C1-kj-h-12-0-UI.s1 /CLONE=UI-R-C1-kj-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.18974.1 /TIER=ConsEnd /STK=2 /UG=Rn.18974 /UG_TITLE=ESTs AI045518 F-box and WD repeat domain containing 7-like LOC100361588 100361588 XM_002727932 1384673_at BF562000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562000 /DB_XREF=gi:11671730 /DB_XREF=UI-R-E1-fy-e-11-0-UI.r1 /CLONE=UI-R-E1-fy-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.13053.1 /TIER=ConsEnd /STK=2 /UG=Rn.13053 /UG_TITLE=ESTs BF562000 1384674_at BF560339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF560339 /DB_XREF=gi:11670069 /DB_XREF=UI-R-E1-fv-b-07-0-UI.r1 /CLONE=UI-R-E1-fv-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.23180.1 /TIER=ConsEnd /STK=2 /UG=Rn.23180 /UG_TITLE=ESTs BF560339 1384675_at AI029113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029113 /DB_XREF=gi:4296316 /DB_XREF=UI-R-C0-ip-b-07-0-UI.s1 /CLONE=UI-R-C0-ip-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.12821.3 /TIER=ConsEnd /STK=2 /UG=Rn.12821 /UG_TITLE=ESTs AI029113 antisense paternally expressed gene 3 Apeg3 619476 NM_001034160 1384676_at AI232436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232436 /DB_XREF=gi:3816316 /DB_XREF=EST229124 /CLONE=RKICB66 /FEA=EST /CNT=3 /TID=Rn.24642.1 /TIER=ConsEnd /STK=2 /UG=Rn.24642 /UG_TITLE=ESTs AI232436 1384677_at AI236595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236595 /DB_XREF=gi:3830101 /DB_XREF=EST233157 /CLONE=ROVDI13 /FEA=EST /CNT=3 /TID=Rn.22707.1 /TIER=ConsEnd /STK=2 /UG=Rn.22707 /UG_TITLE=ESTs, Weakly similar to F22G12.5.p (Caenorhabditis elegans) (C.elegans) AI236595 similar to Dedicator of cytokinesis protein 10 (Protein zizimin 3) RGD1561963 301556 XR_085916 /// XR_086342 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0051020 // GTPase binding // inferred from electronic annotation 1384678_at BF559356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559356 /DB_XREF=gi:11669086 /DB_XREF=UI-R-E1-fb-g-12-0-UI.r1 /CLONE=UI-R-E1-fb-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.9527.1 /TIER=ConsEnd /STK=2 /UG=Rn.9527 /UG_TITLE=ESTs BF559356 1384679_at BF542690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542690 /DB_XREF=gi:11633797 /DB_XREF=UI-R-C3-sm-h-07-0-UI.r1 /CLONE=UI-R-C3-sm-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.43989.1 /TIER=ConsEnd /STK=2 /UG=Rn.43989 /UG_TITLE=ESTs BF542690 similar to CG10806-PB, isoform B LOC679958 679958 NM_001109385 0006810 // transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0015299 // solute:hydrogen antiporter activity // inferred from electronic annotation 1384680_at AA924336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924336 /DB_XREF=gi:4234476 /DB_XREF=UI-R-A1-dr-a-10-0-UI.s3 /CLONE=UI-R-A1-dr-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.23047.1 /TIER=ConsEnd /STK=2 /UG=Rn.23047 /UG_TITLE=ESTs AA924336 1384681_at AI713014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI713014 /DB_XREF=gi:5016814 /DB_XREF=UI-R-Y0-abc-b-12-0-UI.s1 /CLONE=UI-R-Y0-abc-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.41044.1 /TIER=ConsEnd /STK=2 /UG=Rn.41044 /UG_TITLE=ESTs AI713014 FERM domain containing 4B Frmd4b 252858 XM_001077268 /// XM_232212 0001726 // ruffle // not recorded /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384682_at AA964690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964690 /DB_XREF=gi:4279564 /DB_XREF=UI-R-E1-gq-b-10-0-UI.s1 /CLONE=UI-R-E1-gq-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.23231.1 /TIER=ConsEnd /STK=2 /UG=Rn.23231 /UG_TITLE=ESTs AA964690 1384683_at AW524562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524562 /DB_XREF=gi:7166947 /DB_XREF=UI-R-BO0-ahz-h-03-0-UI.s1 /CLONE=UI-R-BO0-ahz-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.45881.1 /TIER=ConsEnd /STK=2 /UG=Rn.45881 /UG_TITLE=ESTs AW524562 1384684_at AI136711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136711 /DB_XREF=gi:3637488 /DB_XREF=UI-R-C2p-nw-a-11-0-UI.s1 /CLONE=UI-R-C2p-nw-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.23697.1 /TIER=ConsEnd /STK=2 /UG=Rn.23697 /UG_TITLE=ESTs AI136711 zinc finger, MIZ-type containing 1 Zmiz1 361103 NM_001108393 0001570 // vasculogenesis // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0007296 // vitellogenesis // not recorded /// 0007569 // cell aging // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0048589 // developmental growth // not recorded /// 0048844 // artery morphogenesis // not recorded 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1384685_at AI059337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059337 /DB_XREF=gi:3333114 /DB_XREF=UI-R-C1-lf-e-08-0-UI.s1 /CLONE=UI-R-C1-lf-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.22566.1 /TIER=ConsEnd /STK=2 /UG=Rn.22566 /UG_TITLE=ESTs AI059337 1384686_at AI071595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071595 /DB_XREF=gi:3397810 /DB_XREF=UI-R-C1-ky-h-07-0-UI.s2 /CLONE=UI-R-C1-ky-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.21956.1 /TIER=ConsEnd /STK=2 /UG=Rn.21956 /UG_TITLE=ESTs, Weakly similar to TCPQ MOUSE T-COMPLEX PROTEIN 1, THETA SUBUNIT (M.musculus) AI071595 1384687_at AI071307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071307 /DB_XREF=gi:3397522 /DB_XREF=UI-R-C1-ko-e-02-0-UI.s2 /CLONE=UI-R-C1-ko-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.22549.1 /TIER=ConsEnd /STK=2 /UG=Rn.22549 /UG_TITLE=ESTs, Highly similar to ENC1_MOUSE ECTODERM-NEURAL CORTEX-1 PROTEIN (ENC-1) (M.musculus) AI071307 ectodermal-neural cortex 1 Enc1 294674 NM_001003401 0005515 // protein binding // inferred from electronic annotation 1384688_at AI385259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385259 /DB_XREF=gi:4198041 /DB_XREF=UI-R-C2-mw-a-02-0-UI.s2 /CLONE=UI-R-C2-mw-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.21922.1 /TIER=ConsEnd /STK=2 /UG=Rn.21922 /UG_TITLE=ESTs AI385259 1384689_at AI554976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI554976 /DB_XREF=gi:4487339 /DB_XREF=UI-R-C2p-qu-b-01-0-UI.s1 /CLONE=UI-R-C2p-qu-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.27307.1 /TIER=ConsEnd /STK=2 /UG=Rn.27307 /UG_TITLE=ESTs, Highly similar to CARDIAC PHOSPHOLAMBAN (R.norvegicus) AI554976 phospholamban Pln 64672 NM_022707 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002026 // regulation of the force of heart contraction // not recorded /// 0006816 // calcium ion transport // inferred from mutant phenotype /// 0006816 // calcium ion transport // non-traceable author statement /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0045822 // negative regulation of heart contraction // inferred from electronic annotation /// 0045822 // negative regulation of heart contraction // not recorded /// 0048738 // cardiac muscle tissue development // inferred from electronic annotation /// 0048738 // cardiac muscle tissue development // not recorded /// 0051924 // regulation of calcium ion transport // inferred from sequence or structural similarity 0005739 // mitochondrion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // not recorded /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005246 // calcium channel regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042030 // ATPase inhibitor activity // inferred from direct assay /// 0042030 // ATPase inhibitor activity // inferred from electronic annotation 1384690_at AI071329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071329 /DB_XREF=gi:3397544 /DB_XREF=UI-R-C1-ko-g-01-0-UI.s2 /CLONE=UI-R-C1-ko-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.20500.1 /TIER=ConsEnd /STK=2 /UG=Rn.20500 /UG_TITLE=ESTs AI071329 1384691_at BE113194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113194 /DB_XREF=gi:8505299 /DB_XREF=UI-R-BJ1-awc-f-02-0-UI.s1 /CLONE=UI-R-BJ1-awc-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.54205.1 /TIER=ConsEnd /STK=2 /UG=Rn.54205 /UG_TITLE=ESTs, Weakly similar to S16788 probable reverse transcriptase - rat (R.norvegicus) BE113194 1384692_at AI172110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172110 /DB_XREF=gi:3712150 /DB_XREF=EST218105 /CLONE=RMUBV06 /FEA=EST /CNT=2 /TID=Rn.22835.1 /TIER=ConsEnd /STK=2 /UG=Rn.22835 /UG_TITLE=ESTs AI172110 1384693_at AI009768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009768 /DB_XREF=gi:3223600 /DB_XREF=EST204219 /CLONE=RLUBO24 /FEA=EST /CNT=2 /TID=Rn.17484.1 /TIER=ConsEnd /STK=2 /UG=Rn.17484 /UG_TITLE=ESTs AI009768 1384694_at AI169393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169393 /DB_XREF=gi:3705701 /DB_XREF=EST215239 /CLONE=RKIBR73 /FEA=EST /CNT=2 /TID=Rn.23873.1 /TIER=ConsEnd /STK=2 /UG=Rn.23873 /UG_TITLE=ESTs AI169393 1384695_at BM387108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387108 /DB_XREF=gi:18187161 /DB_XREF=UI-R-CN1-cji-o-04-0-UI.s1 /CLONE=UI-R-CN1-cji-o-04-0-UI /FEA=EST /CNT=2 /TID=Rn.81907.1 /TIER=ConsEnd /STK=2 /UG=Rn.81907 /UG_TITLE=ESTs BM387108 uroplakin 3A Upk3a 315190 NM_001130507 0000902 // cell morphogenesis // not recorded /// 0001822 // kidney development // not recorded /// 0006833 // water transport // not recorded /// 0015840 // urea transport // not recorded /// 0030855 // epithelial cell differentiation // not recorded /// 0055075 // potassium ion homeostasis // not recorded /// 0055078 // sodium ion homeostasis // not recorded /// 0060157 // urinary bladder development // not recorded 0016324 // apical plasma membrane // not recorded 1384696_at BE113106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113106 /DB_XREF=gi:8505211 /DB_XREF=UI-R-BJ1-awb-f-02-0-UI.s1 /CLONE=UI-R-BJ1-awb-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.52159.1 /TIER=ConsEnd /STK=2 /UG=Rn.52159 /UG_TITLE=ESTs BE113106 1384697_at AA944400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944400 /DB_XREF=gi:3104316 /DB_XREF=EST199899 /CLONE=REMAG60 /FEA=EST /CNT=2 /TID=Rn.22993.1 /TIER=ConsEnd /STK=2 /UG=Rn.22993 /UG_TITLE=ESTs AA944400 1384698_at AI406524 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406524 /DB_XREF=gi:4250028 /DB_XREF=EST234810 /CLONE=RBRDL39 /FEA=EST /CNT=2 /TID=Rn.28145.1 /TIER=ConsEnd /STK=2 /UG=Rn.28145 /UG_TITLE=ESTs, Weakly similar to DVL1 MOUSE SEGMENT POLARITY PROTEIN DISHEVELLED HOMOLOG DVL-1 (M.musculus) AI406524 1384699_at BM384930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384930 /DB_XREF=gi:18184983 /DB_XREF=UI-R-CN1-cjl-d-06-0-UI.s2 /CLONE=UI-R-CN1-cjl-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.81485.1 /TIER=ConsEnd /STK=2 /UG=Rn.81485 /UG_TITLE=ESTs BM384930 1384700_at BM390472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390472 /DB_XREF=gi:18190525 /DB_XREF=UI-R-CN1-cjq-h-24-0-UI.s1 /CLONE=UI-R-CN1-cjq-h-24-0-UI /FEA=EST /CNT=2 /TID=Rn.81722.1 /TIER=ConsEnd /STK=2 /UG=Rn.81722 /UG_TITLE=ESTs BM390472 1384701_at BE108175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108175 /DB_XREF=gi:8500320 /DB_XREF=UI-R-BS1-ayw-g-03-0-UI.s1 /CLONE=UI-R-BS1-ayw-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.51437.1 /TIER=ConsEnd /STK=2 /UG=Rn.51437 /UG_TITLE=ESTs BE108175 1384702_at AI231062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231062 /DB_XREF=gi:3814942 /DB_XREF=EST227750 /CLONE=REMDE78 /FEA=EST /CNT=2 /TID=Rn.12536.2 /TIER=ConsEnd /STK=2 /UG=Rn.12536 /UG_TITLE=ESTs AI231062 1384703_at AI228602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228602 /DB_XREF=gi:3812489 /DB_XREF=EST225297 /CLONE=RBRCX04 /FEA=EST /CNT=2 /TID=Rn.24343.1 /TIER=ConsEnd /STK=2 /UG=Rn.24343 /UG_TITLE=ESTs AI228602 1384704_at BE112917 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112917 /DB_XREF=gi:8505022 /DB_XREF=UI-R-BJ1-awa-d-02-0-UI.s1 /CLONE=UI-R-BJ1-awa-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.49984.1 /TIER=ConsEnd /STK=2 /UG=Rn.49984 /UG_TITLE=ESTs BE112917 1384705_at BI296885 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296885 /DB_XREF=gi:14961755 /DB_XREF=UI-R-DK0-cgg-f-12-0-UI.s1 /CLONE=UI-R-DK0-cgg-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.79476.1 /TIER=ConsEnd /STK=2 /UG=Rn.79476 /UG_TITLE=ESTs BI296885 PHD finger protein 17 Phf17 310352 NM_001107670 0043966 // histone H3 acetylation // not recorded /// 0043981 // histone H4-K5 acetylation // not recorded /// 0043982 // histone H4-K8 acetylation // not recorded /// 0043983 // histone H4-K12 acetylation // not recorded /// 0043984 // histone H4-K16 acetylation // not recorded 0000123 // histone acetyltransferase complex // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384706_at BF406292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406292 /DB_XREF=gi:11394267 /DB_XREF=UI-R-CA1-bjf-d-23-0-UI.s1 /CLONE=UI-R-CA1-bjf-d-23-0-UI /FEA=EST /CNT=2 /TID=Rn.60323.1 /TIER=ConsEnd /STK=2 /UG=Rn.60323 /UG_TITLE=ESTs, Weakly similar to F25B4.2.p (Caenorhabditis elegans) (C.elegans) BF406292 pellino 2 Peli2 305835 NM_001107259 0005829 // cytosol // not recorded /// 0016020 // membrane // not recorded /// 0043234 // protein complex // not recorded 0005515 // protein binding // not recorded 1384707_at AI600020 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600020 /DB_XREF=gi:4609068 /DB_XREF=EST251723 /CLONE=REMDO33 /FEA=EST /CNT=2 /TID=Rn.34140.1 /TIER=ConsEnd /STK=2 /UG=Rn.34140 /UG_TITLE=ESTs AI600020 scavenger receptor class A, member 5 (putative) Scara5 305974 NM_001135855 0006879 // cellular iron ion homeostasis // not recorded /// 0006897 // endocytosis // not recorded /// 0007165 // signal transduction // not recorded /// 0034605 // cellular response to heat // not recorded /// 0034755 // iron ion transmembrane transport // not recorded /// 0070207 // protein homotrimerization // not recorded 0005887 // integral to plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0070287 // ferritin receptor activity // not recorded 1384708_at BF400572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400572 /DB_XREF=gi:11388547 /DB_XREF=UI-R-CA0-bhd-a-01-0-UI.s1 /CLONE=UI-R-CA0-bhd-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.58198.1 /TIER=ConsEnd /STK=2 /UG=Rn.58198 /UG_TITLE=ESTs BF400572 1384709_at AA800711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800711 /DB_XREF=gi:2863666 /DB_XREF=EST190208 /CLONE=RLUAK55 /FEA=EST /CNT=2 /TID=Rn.22795.1 /TIER=ConsEnd /STK=2 /UG=Rn.22795 /UG_TITLE=ESTs AA800711 1384710_at BF403316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403316 /DB_XREF=gi:11391291 /DB_XREF=UI-R-CA1-biy-c-20-0-UI.s1 /CLONE=UI-R-CA1-biy-c-20-0-UI /FEA=EST /CNT=2 /TID=Rn.60249.1 /TIER=ConsEnd /STK=2 /UG=Rn.60249 /UG_TITLE=ESTs BF403316 tudor domain containing 12 Tdrd12 689639 XM_001071461 /// XM_002725568 1384711_at AI144960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144960 /DB_XREF=gi:3666759 /DB_XREF=UI-R-BT0-pp-h-10-0-UI.s1 /CLONE=UI-R-BT0-pp-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.24003.1 /TIER=ConsEnd /STK=2 /UG=Rn.24003 /UG_TITLE=ESTs AI144960 1384712_at AI230376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230376 /DB_XREF=gi:4135543 /DB_XREF=EST227071 /CLONE=REMCV74 /FEA=EST /CNT=2 /TID=Rn.24506.1 /TIER=ConsEnd /STK=2 /UG=Rn.24506 /UG_TITLE=ESTs AI230376 1384713_at BF399647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399647 /DB_XREF=gi:11384657 /DB_XREF=UI-R-CA0-bhv-c-06-0-UI.s2 /CLONE=UI-R-CA0-bhv-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.59428.1 /TIER=ConsEnd /STK=2 /UG=Rn.59428 /UG_TITLE=ESTs, Weakly similar to UROKINASE-TYPE PLASMINOGEN ACTIVATOR PRECURSOR (R.norvegicus) BF399647 testicular serine protease 2 Tesp2 316318 NM_001108209 0006508 // proteolysis // inferred from electronic annotation 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation 1384714_x_at BI850152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI850152 /DB_XREF=gi:16003639 /DB_XREF=imageqc_10_2000sma467bdff41.x1 /CLONE=IMAGE:4197554 /FEA=EST /CNT=2 /TID=Rn.81049.1 /TIER=ConsEnd /STK=2 /UG=Rn.81049 /UG_TITLE=ESTs, Highly similar to 60S RIBOSOMAL PROTEIN L8 (R.norvegicus) BI850152 similar to 60S ribosomal protein L8 /// ribosomal protein L8 RGD1561333 /// Rpl8 26962 /// 499374 NM_001034916 /// XM_001061778 /// XM_574690 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0019843 // rRNA binding // inferred from electronic annotation 1384715_at AI178313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178313 /DB_XREF=gi:3728951 /DB_XREF=EST221981 /CLONE=RPLCO83 /FEA=EST /CNT=2 /TID=Rn.24161.1 /TIER=ConsEnd /STK=2 /UG=Rn.24161 /UG_TITLE=ESTs AI178313 1384716_at AI413003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI413003 /DB_XREF=gi:4256507 /DB_XREF=EST241304 /CLONE=RBREC71 /FEA=EST /CNT=2 /TID=Rn.43658.1 /TIER=ConsEnd /STK=2 /UG=Rn.43658 /UG_TITLE=ESTs, Highly similar to A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine (R.norvegicus) AI413003 synaptotagmin I Syt1 25716 NM_001033680 0006810 // transport // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // not recorded /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0016079 // synaptic vesicle exocytosis // traceable author statement /// 0017156 // calcium ion-dependent exocytosis // traceable author statement /// 0017158 // regulation of calcium ion-dependent exocytosis // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030141 // stored secretory granule // not recorded /// 0030141 // stored secretory granule // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // not recorded /// 0030672 // synaptic vesicle membrane // not recorded /// 0030672 // synaptic vesicle membrane // traceable author statement /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031045 // dense core granule // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042584 // chromaffin granule membrane // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0042734 // presynaptic membrane // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0060201 // clathrin sculpted acetylcholine transport vesicle membrane // not recorded 0005215 // transporter activity // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from direct assay /// 0005543 // phospholipid binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0050750 // low-density lipoprotein receptor binding // inferred from electronic annotation /// 0050750 // low-density lipoprotein receptor binding // not recorded 1384717_at AA894199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894199 /DB_XREF=gi:3021078 /DB_XREF=EST198002 /CLONE=RSPAS58 /FEA=EST /CNT=2 /TID=Rn.22765.1 /TIER=ConsEnd /STK=2 /UG=Rn.22765 /UG_TITLE=ESTs AA894199 1384718_at AI030198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030198 /DB_XREF=gi:3248024 /DB_XREF=UI-R-C0-it-g-12-0-UI.s1 /CLONE=UI-R-C0-it-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.18175.1 /TIER=ConsEnd /STK=2 /UG=Rn.18175 /UG_TITLE=ESTs AI030198 1384719_at AI112966 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112966 /DB_XREF=gi:3512915 /DB_XREF=UI-R-C0-gr-h-04-0-UI.s1 /CLONE=UI-R-C0-gr-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.23293.1 /TIER=ConsEnd /STK=2 /UG=Rn.23293 /UG_TITLE=ESTs AI112966 1384720_at AI232723 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232723 /DB_XREF=gi:4135794 /DB_XREF=EST229411 /CLONE=RKICF64 /FEA=EST /CNT=2 /TID=Rn.24672.1 /TIER=ConsEnd /STK=2 /UG=Rn.24672 /UG_TITLE=ESTs AI232723 1384721_at BI286077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286077 /DB_XREF=gi:14940364 /DB_XREF=UI-R-DD0-bzt-b-12-0-UI.s1 /CLONE=UI-R-DD0-bzt-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.78577.1 /TIER=ConsEnd /STK=2 /UG=Rn.78577 /UG_TITLE=ESTs, Weakly similar to SP22_HUMAN SMALL PROLINE RICH PROTEIN II (H.sapiens) BI286077 hypothetical protein LOC100361349 /// hypothetical protein LOC100361455 LOC100361349 /// LOC100361455 100361349 /// 100361455 XM_002726010 /// XM_002726011 /// XM_002726012 /// XM_002726013 /// XM_002729065 /// XM_002729066 /// XM_002729067 /// XM_002729068 1384722_at BI279481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279481 /DB_XREF=gi:14927334 /DB_XREF=UI-R-DA0-byo-a-09-0-UI.s1 /CLONE=UI-R-DA0-byo-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.77936.1 /TIER=ConsEnd /STK=2 /UG=Rn.77936 /UG_TITLE=ESTs, Weakly similar to S17447 probable ligand-binding protein RY2G5 - rat (R.norvegicus) BI279481 bactericidal/permeability-increasing protein-like 1 Bpil1 296290 NM_001106531 0008289 // lipid binding // inferred from electronic annotation 1384723_at AI172124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172124 /DB_XREF=gi:3712164 /DB_XREF=EST218119 /CLONE=RMUBV23 /FEA=EST /CNT=2 /TID=Rn.24040.1 /TIER=ConsEnd /STK=2 /UG=Rn.24040 /UG_TITLE=ESTs, Weakly similar to FUTB_DROME Alpha-(1,3)-fucosyltransferase B (Galactoside 3-L-fucosyltransferase) (D.melanogaster) AI172124 fucosyltransferase 11 (alpha (1,3) fucosyltransferase) Fut11 286971 NM_173308 0006486 // protein glycosylation // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0008417 // fucosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046920 // alpha(1,3)-fucosyltransferase activity // inferred from electronic annotation 1384724_at AA850766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850766 /DB_XREF=gi:2938306 /DB_XREF=EST193534 /CLONE=ROVAK54 /FEA=EST /CNT=2 /TID=Rn.25321.1 /TIER=ConsEnd /STK=2 /UG=Rn.25321 /UG_TITLE=ESTs AA850766 1384725_at AI407241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407241 /DB_XREF=gi:4250745 /DB_XREF=EST235529 /CLONE=ROVDX59 /FEA=EST /CNT=2 /TID=Rn.25475.1 /TIER=ConsEnd /STK=2 /UG=Rn.25475 /UG_TITLE=ESTs AI407241 Ring finger protein 145 Rnf145 287212 NM_001105778 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384726_at AI058852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058852 /DB_XREF=gi:3332629 /DB_XREF=UI-R-C1-kq-a-01-0-UI.s1 /CLONE=UI-R-C1-kq-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.20999.1 /TIER=ConsEnd /STK=2 /UG=Rn.20999 /UG_TITLE=ESTs AI058852 1384727_at AI227982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227982 /DB_XREF=gi:3811869 /DB_XREF=EST224677 /CLONE=RBRCO35 /FEA=EST /CNT=2 /TID=Rn.24819.1 /TIER=ConsEnd /STK=2 /UG=Rn.24819 /UG_TITLE=ESTs AI227982 1384728_at BE112826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112826 /DB_XREF=gi:8504931 /DB_XREF=UI-R-CA0-axd-c-02-0-UI.s1 /CLONE=UI-R-CA0-axd-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.63555.1 /TIER=ConsEnd /STK=2 /UG=Rn.63555 /UG_TITLE=ESTs, Moderately similar to checkpoint suppressor 1 (H.sapiens) BE112826 forkhead box N3 Foxn3 314374 NM_001108047 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1384729_at BI280301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280301 /DB_XREF=gi:14928948 /DB_XREF=UI-R-DE0-cag-c-12-0-UI.s1 /CLONE=UI-R-DE0-cag-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.78049.1 /TIER=ConsEnd /STK=2 /UG=Rn.78049 /UG_TITLE=ESTs, Weakly similar to MY16 MOUSE MYELOID DIFFERENTIATION PRIMARY RESPONSE PROTEIN MYD116 (M.musculus) BI280301 protein phosphatase 1, regulatory (inhibitor) subunit 15b Ppp1r15b 304799 NM_001107175 0006950 // response to stress // not recorded /// 0006979 // response to oxidative stress // not recorded /// 0006983 // ER overload response // not recorded /// 0016311 // dephosphorylation // not recorded /// 0042542 // response to hydrogen peroxide // not recorded 0000164 // protein phosphatase type 1 complex // not recorded 0004722 // protein serine/threonine phosphatase activity // not recorded 1384730_at AA996877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996877 /DB_XREF=gi:4280641 /DB_XREF=UI-R-C0-hh-b-09-0-UI.s1 /CLONE=UI-R-C0-hh-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.23263.1 /TIER=ConsEnd /STK=2 /UG=Rn.23263 /UG_TITLE=ESTs AA996877 1384731_at AI043907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043907 /DB_XREF=gi:3290642 /DB_XREF=UI-R-C0-jk-g-03-0-UI.s1 /CLONE=UI-R-C0-jk-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.18751.1 /TIER=ConsEnd /STK=2 /UG=Rn.18751 /UG_TITLE=ESTs AI043907 1384732_at AI177301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177301 /DB_XREF=gi:3727939 /DB_XREF=EST220918 /CLONE=RPLBX20 /FEA=EST /CNT=2 /TID=Rn.22755.1 /TIER=ConsEnd /STK=2 /UG=Rn.22755 /UG_TITLE=ESTs AI177301 1384733_at BE106044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106044 /DB_XREF=gi:8498146 /DB_XREF=UI-R-BO1-ask-c-03-0-UI.s1 /CLONE=UI-R-BO1-ask-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.50862.1 /TIER=ConsEnd /STK=2 /UG=Rn.50862 /UG_TITLE=ESTs BE106044 leucine-rich repeat LGI family, member 3 Lgi3 306013 NM_001107277 0017157 // regulation of exocytosis // not recorded 0008021 // synaptic vesicle // not recorded /// 0019717 // synaptosome // not recorded 0005515 // protein binding // not recorded 1384734_at BE121383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121383 /DB_XREF=gi:8513488 /DB_XREF=UI-R-CA0-bax-c-05-0-UI.s1 /CLONE=UI-R-CA0-bax-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.51478.1 /TIER=ConsEnd /STK=2 /UG=Rn.51478 /UG_TITLE=ESTs BE121383 neural cell adhesion molecule 2 Ncam2 288280 NM_203409 0007155 // cell adhesion // inferred from electronic annotation /// 0007413 // axonal fasciculation // inferred from expression pattern /// 0007608 // sensory perception of smell // inferred from expression pattern 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded 1384735_at BF550940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550940 /DB_XREF=gi:11660670 /DB_XREF=UI-R-C1-kc-a-05-0-UI.r1 /CLONE=UI-R-C1-kc-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.15961.1 /TIER=ConsEnd /STK=2 /UG=Rn.15961 /UG_TITLE=ESTs BF550940 1384736_at AA956799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956799 /DB_XREF=gi:4239273 /DB_XREF=UI-R-E1-fr-h-12-0-UI.s1 /CLONE=UI-R-E1-fr-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.23120.1 /TIER=ConsEnd /STK=2 /UG=Rn.23120 /UG_TITLE=ESTs AA956799 1384737_at BF555973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555973 /DB_XREF=gi:11665703 /DB_XREF=UI-R-A1-dy-a-07-0-UI.r1 /CLONE=UI-R-A1-dy-a-07-0-UI /FEA=EST /CNT=2 /TID=Rn.15313.1 /TIER=ConsEnd /STK=2 /UG=Rn.15313 /UG_TITLE=ESTs BF555973 1384738_at AI070149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070149 /DB_XREF=gi:3396400 /DB_XREF=UI-R-Y0-lu-h-09-0-UI.s1 /CLONE=UI-R-Y0-lu-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.19670.1 /TIER=ConsEnd /STK=2 /UG=Rn.19670 /UG_TITLE=ESTs AI070149 1384739_at BE102257 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102257 /DB_XREF=gi:8494356 /DB_XREF=UI-R-BT1-aqk-d-02-0-UI.s1 /CLONE=UI-R-BT1-aqk-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.50252.1 /TIER=ConsEnd /STK=2 /UG=Rn.50252 /UG_TITLE=ESTs, Moderately similar to RAN, member RAS oncogene family (Rattus norvegicus) (R.norvegicus) BE102257 similar to RAN protein RGD1306195 313163 NM_001014062 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded 1384740_at BF412896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412896 /DB_XREF=gi:11400885 /DB_XREF=UI-R-CA0-boc-a-11-0-UI.s1 /CLONE=UI-R-CA0-boc-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.52395.1 /TIER=ConsEnd /STK=2 /UG=Rn.52395 /UG_TITLE=ESTs BF412896 quiescin Q6 sulfhydryl oxidase 2 Qsox2 681023 NM_001109434 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0016972 // thiol oxidase activity // inferred from electronic annotation 1384741_at BE105438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105438 /DB_XREF=gi:8497540 /DB_XREF=UI-R-BO1-asn-g-06-0-UI.s1 /CLONE=UI-R-BO1-asn-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.46221.1 /TIER=ConsEnd /STK=2 /UG=Rn.46221 /UG_TITLE=ESTs BE105438 phospholipase A2, group III Pla2g3 289733 NM_001106015 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0004623 // phospholipase A2 activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1384742_at BF389776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389776 /DB_XREF=gi:11374612 /DB_XREF=UI-R-BS2-bdo-f-04-0-UI.s1 /CLONE=UI-R-BS2-bdo-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.57010.1 /TIER=ConsEnd /STK=2 /UG=Rn.57010 /UG_TITLE=ESTs BF389776 Alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) Atrx 246284 NM_001105757 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded 0000228 // nuclear chromosome // inferred from electronic annotation /// 0000228 // nuclear chromosome // not recorded /// 0000792 // heterochromatin // inferred from electronic annotation /// 0000792 // heterochromatin // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0070087 // chromo shadow domain binding // inferred from electronic annotation /// 0070087 // chromo shadow domain binding // not recorded 1384743_at BF418132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418132 /DB_XREF=gi:11406121 /DB_XREF=UI-R-CA0-blz-h-04-0-UI.s1 /CLONE=UI-R-CA0-blz-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.61749.1 /TIER=ConsEnd /STK=2 /UG=Rn.61749 /UG_TITLE=ESTs BF418132 1384744_at BF404011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404011 /DB_XREF=gi:11391986 /DB_XREF=UI-R-CA1-bjd-g-12-0-UI.s1 /CLONE=UI-R-CA1-bjd-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.59579.1 /TIER=ConsEnd /STK=2 /UG=Rn.59579 /UG_TITLE=ESTs BF404011 similar to expressed sequence AI836003 MGC114464 500925 NM_001024909 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1384745_at BE111824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111824 /DB_XREF=gi:8503929 /DB_XREF=UI-R-BJ1-avz-b-11-0-UI.s1 /CLONE=UI-R-BJ1-avz-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.51772.1 /TIER=ConsEnd /STK=2 /UG=Rn.51772 /UG_TITLE=ESTs BE111824 piwi-like 2 (Drosophila) Piwil2 306011 NM_001107276 0000966 // RNA 5'-end processing // not recorded /// 0007128 // meiotic prophase I // not recorded /// 0007283 // spermatogenesis // not recorded /// 0030718 // germ-line stem cell maintenance // not recorded /// 0031047 // gene silencing by RNA // not recorded /// 0034587 // piRNA metabolic process // not recorded /// 0043046 // DNA methylation involved in gamete generation // not recorded /// 0045727 // positive regulation of translation // not recorded /// 0048477 // oogenesis // not recorded 0005737 // cytoplasm // not recorded /// 0005844 // polysome // not recorded /// 0033391 // chromatoid body // not recorded /// 0043186 // P granule // not recorded /// 0071546 // pi-body // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0034584 // piRNA binding // not recorded 1384746_at AA875130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875130 /DB_XREF=gi:4231011 /DB_XREF=UI-R-E0-bu-e-02-0-UI.s2 /CLONE=UI-R-E0-bu-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.22627.1 /TIER=ConsEnd /STK=2 /UG=Rn.22627 /UG_TITLE=ESTs AA875130 1384747_at BF404188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404188 /DB_XREF=gi:11392163 /DB_XREF=UI-R-CA1-biw-e-02-0-UI.s1 /CLONE=UI-R-CA1-biw-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.60453.1 /TIER=ConsEnd /STK=2 /UG=Rn.60453 /UG_TITLE=ESTs BF404188 1384748_at BE106100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106100 /DB_XREF=gi:8498202 /DB_XREF=UI-R-BO1-ask-h-09-0-UI.s1 /CLONE=UI-R-BO1-ask-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.50873.1 /TIER=ConsEnd /STK=2 /UG=Rn.50873 /UG_TITLE=ESTs, Highly similar to JC7265 neprilysin (EC 3.4.24.11) II - rat (R.norvegicus) BE106100 membrane metallo-endopeptidase-like 1 Mmel1 313755 NM_001107997 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005624 // membrane fraction // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded 0004222 // metalloendopeptidase activity // inferred from direct assay /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384749_at BF392943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392943 /DB_XREF=gi:11377802 /DB_XREF=UI-R-CA0-bfr-a-06-0-UI.s1 /CLONE=UI-R-CA0-bfr-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.57946.1 /TIER=ConsEnd /STK=2 /UG=Rn.57946 /UG_TITLE=ESTs BF392943 Nucleotide binding protein 1 Nubp1 287042 NM_001009619 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // not recorded /// 0016049 // cell growth // inferred from electronic annotation /// 0016049 // cell growth // not recorded /// 0016226 // iron-sulfur cluster assembly // not recorded /// 0016226 // iron-sulfur cluster assembly // inferred from sequence or structural similarity /// 0016226 // iron-sulfur cluster assembly // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // not recorded /// 0051536 // iron-sulfur cluster binding // inferred from sequence or structural similarity /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 1384750_at BF403834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403834 /DB_XREF=gi:11391809 /DB_XREF=UI-R-CA1-bix-h-09-0-UI.s1 /CLONE=UI-R-CA1-bix-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.60304.1 /TIER=ConsEnd /STK=2 /UG=Rn.60304 /UG_TITLE=ESTs, Highly similar to NUMB_MOUSE NUMB PROTEIN HOMOLOG (M-NUMB) (M-NB) (M.musculus) BF403834 numb homolog (Drosophila) Numb 29419 NM_133287 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007405 // neuroblast proliferation // not recorded /// 0007405 // neuroblast proliferation // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0008283 // cell proliferation // non-traceable author statement /// 0021670 // lateral ventricle development // not recorded /// 0021670 // lateral ventricle development // inferred from electronic annotation /// 0021849 // neuroblast division in subventricular zone // not recorded /// 0021849 // neuroblast division in subventricular zone // inferred from electronic annotation /// 0030154 // cell differentiation // non-traceable author statement /// 0030900 // forebrain development // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0034332 // adherens junction organization // not recorded /// 0034332 // adherens junction organization // inferred from electronic annotation /// 0045664 // regulation of neuron differentiation // inferred from mutant phenotype /// 0050769 // positive regulation of neurogenesis // not recorded /// 0050769 // positive regulation of neurogenesis // inferred from electronic annotation /// 0050775 // positive regulation of dendrite morphogenesis // inferred from mutant phenotype 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0019897 // extrinsic to plasma membrane // not recorded /// 0019897 // extrinsic to plasma membrane // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from direct assay /// 0045177 // apical part of cell // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0045294 // alpha-catenin binding // not recorded /// 0045294 // alpha-catenin binding // inferred from electronic annotation /// 0045296 // cadherin binding // not recorded /// 0045296 // cadherin binding // inferred from electronic annotation 1384751_at BF557946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557946 /DB_XREF=gi:11667676 /DB_XREF=UI-R-C0-hf-g-07-0-UI.r1 /CLONE=UI-R-C0-hf-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.33042.1 /TIER=ConsEnd /STK=2 /UG=Rn.33042 /UG_TITLE=ESTs BF557946 RNA binding motif protein 8A Rbm8a 295284 XM_001059872 /// XM_215637 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation /// 0035145 // exon-exon junction complex // inferred from electronic annotation /// 0035145 // exon-exon junction complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384752_at BF407755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407755 /DB_XREF=gi:11395730 /DB_XREF=UI-R-BJ2-brd-b-10-0-UI.s1 /CLONE=UI-R-BJ2-brd-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.61078.1 /TIER=ConsEnd /STK=2 /UG=Rn.61078 /UG_TITLE=ESTs, Weakly similar to LECH RAT ASIALOGLYCOPROTEIN RECEPTOR 1 (R.norvegicus) BF407755 similar to osteoclast inhibitory lectin LOC689770 689770 NM_001142304 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1384753_at BF399537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399537 /DB_XREF=gi:11384545 /DB_XREF=UI-R-CA1-bjb-l-08-0-UI.s1 /CLONE=UI-R-CA1-bjb-l-08-0-UI /FEA=EST /CNT=2 /TID=Rn.59403.1 /TIER=ConsEnd /STK=2 /UG=Rn.59403 /UG_TITLE=ESTs BF399537 family with sequence similarity 71, member A Fam71a 498311 NM_001109084 1384754_at BE107768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107768 /DB_XREF=gi:8499873 /DB_XREF=UI-R-CA0-aww-f-09-0-UI.s1 /CLONE=UI-R-CA0-aww-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.51279.1 /TIER=ConsEnd /STK=2 /UG=Rn.51279 /UG_TITLE=ESTs BE107768 similar to hypothetical protein MGC94915 362712 NM_001007009 1384755_at BE108597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108597 /DB_XREF=gi:8500702 /DB_XREF=UI-R-CA0-axg-b-08-0-UI.s1 /CLONE=UI-R-CA0-axg-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.51543.1 /TIER=ConsEnd /STK=2 /UG=Rn.51543 /UG_TITLE=ESTs BE108597 1384756_at BF394311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394311 /DB_XREF=gi:11379175 /DB_XREF=UI-R-CA0-bgr-d-11-0-UI.s1 /CLONE=UI-R-CA0-bgr-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.58263.1 /TIER=ConsEnd /STK=2 /UG=Rn.58263 /UG_TITLE=ESTs BF394311 solute carrier family 43, member 2 Slc43a2 287532 NM_001105812 0003333 // amino acid transmembrane transport // not recorded /// 0006865 // amino acid transport // not recorded /// 0015807 // L-amino acid transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // not recorded 0015171 // amino acid transmembrane transporter activity // not recorded /// 0015179 // L-amino acid transmembrane transporter activity // not recorded 1384757_at BF412566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412566 /DB_XREF=gi:11400555 /DB_XREF=UI-R-BT1-bnp-c-02-0-UI.s1 /CLONE=UI-R-BT1-bnp-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.62116.1 /TIER=ConsEnd /STK=2 /UG=Rn.62116 /UG_TITLE=ESTs BF412566 2-oxoglutarate and iron-dependent oxygenase domain containing 1 Ogfod1 307657 NM_001107411 0055114 // oxidation reduction // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0016706 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation 1384758_at BE107825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107825 /DB_XREF=gi:8499930 /DB_XREF=UI-R-CA0-awx-c-10-0-UI.s1 /CLONE=UI-R-CA0-awx-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.51303.1 /TIER=ConsEnd /STK=2 /UG=Rn.51303 /UG_TITLE=ESTs BE107825 1384759_at AW534015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534015 /DB_XREF=gi:7176429 /DB_XREF=UI-R-C4-alr-h-12-0-UI.s1 /CLONE=UI-R-C4-alr-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.48234.1 /TIER=ConsEnd /STK=2 /UG=Rn.48234 /UG_TITLE=ESTs AW534015 PHD finger protein 17 Phf17 310352 NM_001107670 0043966 // histone H3 acetylation // not recorded /// 0043981 // histone H4-K5 acetylation // not recorded /// 0043982 // histone H4-K8 acetylation // not recorded /// 0043983 // histone H4-K12 acetylation // not recorded /// 0043984 // histone H4-K16 acetylation // not recorded 0000123 // histone acetyltransferase complex // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384760_at AI711126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711126 /DB_XREF=gi:5000902 /DB_XREF=UI-R-AD1-zo-d-11-0-UI.s1 /CLONE=UI-R-AD1-zo-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.40837.1 /TIER=ConsEnd /STK=2 /UG=Rn.40837 /UG_TITLE=ESTs, Moderately similar to SNX6_HUMAN SORTING NEXIN 6 (H.sapiens) AI711126 sorting nexin 32 Snx32 361708 XM_001073782 /// XM_341993 0007154 // cell communication // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1384761_at AI501676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501676 /DB_XREF=gi:4399527 /DB_XREF=UI-R-C0-is-f-07-0-UI.s1 /CLONE=UI-R-C0-is-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.12473.2 /TIER=ConsEnd /STK=2 /UG=Rn.12473 /UG_TITLE=ESTs, Weakly similar to S26059 probable transforming protein (H.sapiens) AI501676 1384762_at BE103873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103873 /DB_XREF=gi:8495973 /DB_XREF=UI-R-BX0-arh-h-02-0-UI.s1 /CLONE=UI-R-BX0-arh-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.50536.1 /TIER=ConsEnd /STK=2 /UG=Rn.50536 /UG_TITLE=ESTs BE103873 1384763_at BF392435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392435 /DB_XREF=gi:11377292 /DB_XREF=UI-R-CA0-bfj-b-10-0-UI.s1 /CLONE=UI-R-CA0-bfj-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.57825.1 /TIER=ConsEnd /STK=2 /UG=Rn.57825 /UG_TITLE=ESTs, Weakly similar to S19586 N-methyl-D-aspartate receptor glutamate-binding chain - rat (R.norvegicus) BF392435 similar to RIKEN cDNA 4930500J03 RGD1306626 362319 NM_001039612 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1384764_at BF418343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418343 /DB_XREF=gi:11406332 /DB_XREF=UI-R-CA0-bme-a-03-0-UI.s1 /CLONE=UI-R-CA0-bme-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.63158.1 /TIER=ConsEnd /STK=2 /UG=Rn.63158 /UG_TITLE=ESTs BF418343 transmembrane protein 149 Tmem149 499126 NM_001134610 0005515 // protein binding // inferred from electronic annotation 1384765_at BI289371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289371 /DB_XREF=gi:14946865 /DB_XREF=UI-R-DK0-cfg-b-07-0-UI.s1 /CLONE=UI-R-DK0-cfg-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.79027.1 /TIER=ConsEnd /STK=2 /UG=Rn.79027 /UG_TITLE=ESTs BI289371 rhomboid 5 homolog 2 (Drosophila) Rhbdf2 303690 NM_001107067 0016021 // integral to membrane // inferred from electronic annotation 0004252 // serine-type endopeptidase activity // inferred from electronic annotation 1384766_a_at AI717644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717644 /DB_XREF=gi:5034948 /DB_XREF=UI-R-Y0-acq-d-08-0-UI.s1 /CLONE=UI-R-Y0-acq-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.41191.2 /TIER=ConsEnd /STK=1 /UG=Rn.41191 /UG_TITLE=ESTs AI717644 PHD finger protein 14 Phf14 500030 NM_001110492 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384767_at BF404275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404275 /DB_XREF=gi:11392250 /DB_XREF=UI-R-CA1-bjd-c-23-0-UI.s1 /CLONE=UI-R-CA1-bjd-c-23-0-UI /FEA=EST /CNT=2 /TID=Rn.59562.1 /TIER=ConsEnd /STK=2 /UG=Rn.59562 /UG_TITLE=ESTs BF404275 ubiquitin specific peptidase 42 Usp42 288482 NM_001105909 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1384768_at BF393575 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393575 /DB_XREF=gi:11378437 /DB_XREF=UI-R-CA0-bgd-e-03-0-UI.s1 /CLONE=UI-R-CA0-bgd-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.58046.1 /TIER=ConsEnd /STK=2 /UG=Rn.58046 /UG_TITLE=ESTs BF393575 zinc finger protein 94 Zfp94 499095 NM_001037212 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384769_a_at AI136549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136549 /DB_XREF=gi:3637326 /DB_XREF=UI-R-C2p-nw-b-04-0-UI.s1 /CLONE=UI-R-C2p-nw-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.22389.2 /TIER=ConsEnd /STK=1 /UG=Rn.22389 /UG_TITLE=ESTs, Moderately similar to ZXDB_HUMAN ZINC FINGER X-LINKED PROTEIN ZXDB (H.sapiens) AI136549 similar to Zinc finger X-linked protein ZXDB LOC683516 683516 XM_001066304 1384770_at AI112057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112057 /DB_XREF=gi:3512006 /DB_XREF=UI-R-Y0-mh-d-06-0-UI.s1 /CLONE=UI-R-Y0-mh-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.20341.1 /TIER=ConsEnd /STK=2 /UG=Rn.20341 /UG_TITLE=ESTs AI112057 1384771_at AW527684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527684 /DB_XREF=gi:7170098 /DB_XREF=UI-R-BT1-ajy-a-08-0-UI.s1 /CLONE=UI-R-BT1-ajy-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.46621.1 /TIER=ConsEnd /STK=2 /UG=Rn.46621 /UG_TITLE=ESTs AW527684 transmembrane protein 132E Tmem132e 287564 NM_001134410 1384772_at BF400907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400907 /DB_XREF=gi:11388882 /DB_XREF=UI-R-CA0-bgg-c-11-0-UI.s1 /CLONE=UI-R-CA0-bgg-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.53276.1 /TIER=ConsEnd /STK=2 /UG=Rn.53276 /UG_TITLE=ESTs BF400907 1384773_at AI044323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044323 /DB_XREF=gi:3291226 /DB_XREF=UI-R-C1-jx-f-03-0-UI.s1 /CLONE=UI-R-C1-jx-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.32325.2 /TIER=ConsEnd /STK=2 /UG=Rn.32325 /UG_TITLE=ESTs AI044323 ubiquitin domain containing 2 Ubtd2 287178 XM_001063674 /// XM_213249 1384774_at AA925026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925026 /DB_XREF=gi:4236217 /DB_XREF=UI-R-A1-ei-g-05-0-UI.s1 /CLONE=UI-R-A1-ei-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.8428.1 /TIER=ConsEnd /STK=2 /UG=Rn.8428 /UG_TITLE=ESTs, Weakly similar to MCT7 RAT MAST CELL PROTEASE 7 PRECURSOR (R.norvegicus) AA925026 transmembrane protease, serine 8 (intestinal) Tmprss8 287106 NM_199371 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0046658 // anchored to plasma membrane // non-traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from direct assay /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017080 // sodium channel regulator activity // inferred from direct assay 1384775_s_at AA925026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925026 /DB_XREF=gi:4236217 /DB_XREF=UI-R-A1-ei-g-05-0-UI.s1 /CLONE=UI-R-A1-ei-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.8428.1 /TIER=ConsEnd /STK=2 /UG=Rn.8428 /UG_TITLE=ESTs, Weakly similar to MCT7 RAT MAST CELL PROTEASE 7 PRECURSOR (R.norvegicus) AA925026 transmembrane protease, serine 8 (intestinal) Tmprss8 287106 NM_199371 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0046658 // anchored to plasma membrane // non-traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from direct assay /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017080 // sodium channel regulator activity // inferred from direct assay 1384776_x_at AI716186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716186 /DB_XREF=gi:5033439 /DB_XREF=UI-R-Y0-abl-d-11-0-UI.s2 /CLONE=UI-R-Y0-abl-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.11739.2 /TIER=ConsEnd /STK=2 /UG=Rn.11739 /UG_TITLE=ESTs AI716186 similar to C19orf36 protein RGD1564722 362832 XM_001071667 /// XM_002726872 /// XM_002729764 /// XM_343160 1384777_at AI136182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136182 /DB_XREF=gi:3636959 /DB_XREF=UI-R-C2p-ns-b-05-0-UI.s1 /CLONE=UI-R-C2p-ns-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.30995.2 /TIER=ConsEnd /STK=2 /UG=Rn.30995 /UG_TITLE=ESTs, Weakly similar to F25H2.4.p (Caenorhabditis elegans) (C.elegans) AI136182 Family with sequence similarity 158, member A Fam158a 290224 NM_001008296 1384778_at AI059573 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059573 /DB_XREF=gi:3333350 /DB_XREF=UI-R-C1-lj-d-06-0-UI.s1 /CLONE=UI-R-C1-lj-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.19214.1 /TIER=ConsEnd /STK=2 /UG=Rn.19214 /UG_TITLE=ESTs, Highly similar to CLCR RAT CALDECRIN PRECURSOR (R.norvegicus) AI059573 chymotrypsin C (caldecrin) Ctrc 362653 NM_001077649 0006508 // proteolysis // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1384779_at AI716342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716342 /DB_XREF=gi:5033595 /DB_XREF=UI-R-Y0-aby-g-08-0-UI.s1 /CLONE=UI-R-Y0-aby-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.41338.1 /TIER=ConsEnd /STK=2 /UG=Rn.41338 /UG_TITLE=ESTs AI716342 complexin 3 Cplx3 501005 NM_001109295 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0016079 // synaptic vesicle exocytosis // not recorded /// 0030073 // insulin secretion // not recorded /// 0046928 // regulation of neurotransmitter secretion // not recorded /// 0055085 // transmembrane transport // not recorded 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // not recorded /// 0045202 // synapse // not recorded 0000149 // SNARE binding // not recorded /// 0005326 // neurotransmitter transporter activity // not recorded /// 0019905 // syntaxin binding // inferred from electronic annotation 1384780_at BF402747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402747 /DB_XREF=gi:11390722 /DB_XREF=UI-R-CA0-bhk-b-07-0-UI.s1 /CLONE=UI-R-CA0-bhk-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.57966.1 /TIER=ConsEnd /STK=2 /UG=Rn.57966 /UG_TITLE=ESTs BF402747 copine IV Cpne4 367160 NM_001109003 1384781_at AA965176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965176 /DB_XREF=gi:4280050 /DB_XREF=UI-R-C0-hc-b-07-0-UI.s1 /CLONE=UI-R-C0-hc-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.23247.1 /TIER=ConsEnd /STK=2 /UG=Rn.23247 /UG_TITLE=ESTs AA965176 zinc finger homeobox 4 Zfhx4 310250 NM_001191702 /// XM_001058915 /// XM_226964 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1384782_at BI284006 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284006 /DB_XREF=gi:14936272 /DB_XREF=UI-R-DA0-bzd-b-10-0-UI.s1 /CLONE=UI-R-DA0-bzd-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.77932.1 /TIER=ConsEnd /STK=2 /UG=Rn.77932 /UG_TITLE=ESTs, Weakly similar to A46958 androgen-binding protein alpha chain precursor, b variant - mouse (fragment) (M.musculus) BI284006 androgen binding protein, alpha Abpa 361551 NM_001100859 0005576 // extracellular region // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1384783_at BI289823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289823 /DB_XREF=gi:14947797 /DB_XREF=UI-R-DK0-cfo-f-09-0-UI.s1 /CLONE=UI-R-DK0-cfo-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.79083.1 /TIER=ConsEnd /STK=2 /UG=Rn.79083 /UG_TITLE=ESTs BI289823 zinc finger protein 161 Zfp161 282825 NM_172325 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384784_at AI111432 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111432 /DB_XREF=gi:3511474 /DB_XREF=UI-R-Y0-lz-b-03-0-UI.s1 /CLONE=UI-R-Y0-lz-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.26573.1 /TIER=ConsEnd /STK=2 /UG=Rn.26573 /UG_TITLE=ESTs, Weakly similar to JG0168 gob-5 protein - mouse (M.musculus) AI111432 chloride channel calcium activated 2 /// chloride channel calcium activated 4-like Clca2 /// Clca4l 362052 /// 499721 NM_001013202 /// NM_001077356 0006821 // chloride transport // not recorded /// 0034220 // ion transmembrane transport // not recorded 0005887 // integral to plasma membrane // not recorded 0005229 // intracellular calcium activated chloride channel activity // not recorded 1384785_at BE120224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120224 /DB_XREF=gi:8512329 /DB_XREF=UI-R-CA0-bal-a-03-0-UI.s1 /CLONE=UI-R-CA0-bal-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.53270.1 /TIER=ConsEnd /STK=2 /UG=Rn.53270 /UG_TITLE=ESTs BE120224 1384786_at AI073019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073019 /DB_XREF=gi:3399213 /DB_XREF=UI-R-Y0-md-e-11-0-UI.s1 /CLONE=UI-R-Y0-md-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.21836.1 /TIER=ConsEnd /STK=2 /UG=Rn.21836 /UG_TITLE=ESTs AI073019 1384787_at AI044631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044631 /DB_XREF=gi:3291492 /DB_XREF=UI-R-C1-kc-h-05-0-UI.s1 /CLONE=UI-R-C1-kc-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.15973.1 /TIER=ConsEnd /STK=2 /UG=Rn.15973 /UG_TITLE=ESTs, Highly similar to CD3G RAT T-CELL SURFACE GLYCOPROTEIN CD3 GAMMA CHAIN PRECURSOR (R.norvegicus) AI044631 CD3 molecule, gamma polypeptide Cd3g 300678 NM_001077646 0007163 // establishment or maintenance of cell polarity // not recorded /// 0007163 // establishment or maintenance of cell polarity // inferred from sequence or structural similarity /// 0007163 // establishment or maintenance of cell polarity // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from sequence or structural similarity /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0015031 // protein transport // not recorded /// 0015031 // protein transport // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from sequence or structural similarity /// 0042981 // regulation of apoptosis // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042105 // alpha-beta T cell receptor complex // inferred from electronic annotation /// 0042105 // alpha-beta T cell receptor complex // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // not recorded /// 0004888 // transmembrane receptor activity // inferred from sequence or structural similarity /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 1384788_at BF393298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393298 /DB_XREF=gi:11378158 /DB_XREF=UI-R-CA0-bft-b-12-0-UI.s1 /CLONE=UI-R-CA0-bft-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.58025.1 /TIER=ConsEnd /STK=2 /UG=Rn.58025 /UG_TITLE=ESTs BF393298 diacylglycerol lipase, beta Daglb 304289 NM_001107120 0006629 // lipid metabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004806 // triglyceride lipase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384789_at AA998672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998672 /DB_XREF=gi:4291475 /DB_XREF=UI-R-C0-ig-g-01-0-UI.s1 /CLONE=UI-R-C0-ig-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.27474.1 /TIER=ConsEnd /STK=2 /UG=Rn.27474 /UG_TITLE=ESTs, Weakly similar to T16648 hypothetical protein R02E12.4 - Caenorhabditis elegans (C.elegans) AA998672 tektin 4 Tekt4 302991 NM_001013965 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0030030 // cell projection organization // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0019861 // flagellum // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 1384790_at BF388025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388025 /DB_XREF=gi:11372849 /DB_XREF=UI-R-CA1-bbx-d-08-0-UI.s1 /CLONE=UI-R-CA1-bbx-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.4013.2 /TIER=ConsEnd /STK=2 /UG=Rn.4013 /UG_TITLE=ESTs, Moderately similar to JC5821 NADH dehydrogenase (H.sapiens) BF388025 1384791_at AI112158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112158 /DB_XREF=gi:3512107 /DB_XREF=UI-R-Y0-ml-d-05-0-UI.s1 /CLONE=UI-R-Y0-ml-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.23582.1 /TIER=ConsEnd /STK=2 /UG=Rn.23582 /UG_TITLE=ESTs AI112158 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 B3gnt2 305571 NM_001107240 0006486 // protein glycosylation // inferred from electronic annotation /// 0006486 // protein glycosylation // not recorded /// 0007411 // axon guidance // not recorded /// 0007608 // sensory perception of smell // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008378 // galactosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1384792_at BE107114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107114 /DB_XREF=gi:8499219 /DB_XREF=UI-R-BS1-ayq-a-06-0-UI.s1 /CLONE=UI-R-BS1-ayq-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.51116.1 /TIER=ConsEnd /STK=2 /UG=Rn.51116 /UG_TITLE=ESTs BE107114 PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) Prpf40a 295607 NM_001106480 0016363 // nuclear matrix // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384793_at BF406318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406318 /DB_XREF=gi:11394293 /DB_XREF=UI-R-CA1-bjf-j-09-0-UI.s1 /CLONE=UI-R-CA1-bjf-j-09-0-UI /FEA=EST /CNT=2 /TID=Rn.60944.1 /TIER=ConsEnd /STK=2 /UG=Rn.60944 /UG_TITLE=ESTs, Weakly similar to A57542 p96 protein - mouse (M.musculus) BF406318 disabled homolog 1 (Drosophila) Dab1 266729 NM_153621 0001764 // neuron migration // inferred from direct assay /// 0001764 // neuron migration // not recorded /// 0007162 // negative regulation of cell adhesion // not recorded /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0007494 // midgut development // inferred from expression pattern /// 0021589 // cerebellum structural organization // not recorded /// 0021795 // cerebral cortex cell migration // not recorded /// 0021799 // cerebral cortex radially oriented cell migration // inferred from mutant phenotype /// 0021799 // cerebral cortex radially oriented cell migration // not recorded /// 0021813 // cell-cell adhesion involved in neuronal-glial interactions involved in cerebral cortex radial glia guided migration // not recorded /// 0021942 // radial glia guided migration of Purkinje cell // not recorded /// 0021987 // cerebral cortex development // inferred from expression pattern /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0045860 // positive regulation of protein kinase activity // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005903 // brush border // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045177 // apical part of cell // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction 1384794_at BE106136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106136 /DB_XREF=gi:8498238 /DB_XREF=UI-R-BX0-ase-d-06-0-UI.s1 /CLONE=UI-R-BX0-ase-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.50854.1 /TIER=ConsEnd /STK=2 /UG=Rn.50854 /UG_TITLE=ESTs BE106136 1384795_at BE116205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116205 /DB_XREF=gi:8508310 /DB_XREF=UI-R-BS1-aya-f-04-0-UI.s1 /CLONE=UI-R-BS1-aya-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.52640.1 /TIER=ConsEnd /STK=2 /UG=Rn.52640 /UG_TITLE=ESTs, Highly similar to JC4842 DNA-binding nuclear protein NP220 - mouse (M.musculus) BE116205 zinc finger, matrin-like Zfml 312491 NM_001107868 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1384796_at BF389744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389744 /DB_XREF=gi:11374580 /DB_XREF=UI-R-BS2-bdo-c-06-0-UI.s1 /CLONE=UI-R-BS2-bdo-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.57000.1 /TIER=ConsEnd /STK=2 /UG=Rn.57000 /UG_TITLE=ESTs BF389744 early B-cell factor 2 Ebf2 361060 NM_001108383 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384797_at BF404325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404325 /DB_XREF=gi:11392300 /DB_XREF=UI-R-CA1-bjd-m-11-0-UI.s1 /CLONE=UI-R-CA1-bjd-m-11-0-UI /FEA=EST /CNT=2 /TID=Rn.59545.1 /TIER=ConsEnd /STK=2 /UG=Rn.59545 /UG_TITLE=ESTs, Moderately similar to T17320 hypothetical protein DKFZp564J0863.1 (H.sapiens) BF404325 atlastin GTPase 3 Atl3 309187 NM_001044241 0006888 // ER to Golgi vesicle-mediated transport // not recorded /// 0007029 // endoplasmic reticulum organization // not recorded /// 0007029 // endoplasmic reticulum organization // inferred from sequence or structural similarity /// 0007030 // Golgi organization // inferred from sequence or structural similarity /// 0051260 // protein homooligomerization // not recorded /// 0051260 // protein homooligomerization // inferred from sequence or structural similarity 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from sequence or structural similarity 1384798_at BE119818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119818 /DB_XREF=gi:8511923 /DB_XREF=UI-R-CA0-ban-d-04-0-UI.s1 /CLONE=UI-R-CA0-ban-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.59942.1 /TIER=ConsEnd /STK=2 /UG=Rn.59942 /UG_TITLE=ESTs, Highly similar to NO56_HUMAN NUCLEOLAR PROTEIN NOP56 (H.sapiens) BE119818 1384799_at BF416137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416137 /DB_XREF=gi:11404126 /DB_XREF=UI-R-CA0-bkq-f-08-0-UI.s1 /CLONE=UI-R-CA0-bkq-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.62924.1 /TIER=ConsEnd /STK=2 /UG=Rn.62924 /UG_TITLE=ESTs, Weakly similar to T17202 DNA-directed DNA polymerase (M.musculus) BF416137 similar to KIAA2022 protein RGD1561931 302396 XM_001056559 /// XM_217568 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation 1384800_at BE101902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101902 /DB_XREF=gi:8493965 /DB_XREF=UI-R-BO1-aqd-d-02-0-UI.s1 /CLONE=UI-R-BO1-aqd-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.49087.1 /TIER=ConsEnd /STK=2 /UG=Rn.49087 /UG_TITLE=ESTs, Highly similar to ZIC3 MOUSE ZINC FINGER PROTEIN ZIC3 (M.musculus) BE101902 Zic family member 3 (odd-paired homolog, Drosophila) Zic3 367944 NM_001109019 0001947 // heart looping // not recorded /// 0007368 // determination of left/right symmetry // not recorded /// 0007389 // pattern specification process // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1384801_at AA963592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963592 /DB_XREF=gi:4278495 /DB_XREF=UI-R-E1-gn-f-05-0-UI.s1 /CLONE=UI-R-E1-gn-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.11589.2 /TIER=ConsEnd /STK=2 /UG=Rn.11589 /UG_TITLE=ESTs AA963592 Nipped-B homolog (Drosophila) Nipbl 294787 NM_001106415 0003007 // heart morphogenesis // not recorded /// 0003151 // outflow tract morphogenesis // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0007064 // mitotic sister chromatid cohesion // not recorded /// 0007420 // brain development // not recorded /// 0007507 // heart development // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0031065 // positive regulation of histone deacetylation // not recorded /// 0034088 // maintenance of mitotic sister chromatid cohesion // not recorded /// 0034613 // cellular protein localization // not recorded /// 0035117 // embryonic arm morphogenesis // not recorded /// 0035140 // arm morphogenesis // not recorded /// 0035261 // external genitalia morphogenesis // not recorded /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0042471 // ear morphogenesis // not recorded /// 0042634 // regulation of hair cycle // not recorded /// 0045444 // fat cell differentiation // not recorded /// 0045778 // positive regulation of ossification // not recorded /// 0045995 // regulation of embryonic development // not recorded /// 0048557 // embryonic digestive tract morphogenesis // not recorded /// 0048589 // developmental growth // not recorded /// 0048592 // eye morphogenesis // not recorded /// 0048638 // regulation of developmental growth // not recorded /// 0048701 // embryonic cranial skeleton morphogenesis // not recorded /// 0048703 // embryonic viscerocranium morphogenesis // not recorded /// 0050890 // cognition // not recorded /// 0060325 // face morphogenesis // not recorded /// 0061010 // gall bladder development // not recorded /// 0061038 // uterus morphogenesis // not recorded /// 0071481 // cellular response to X-ray // not recorded 0005634 // nucleus // not recorded /// 0032116 // cohesin loading complex // not recorded 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0042826 // histone deacetylase binding // not recorded /// 0047485 // protein N-terminus binding // not recorded /// 0070087 // chromo shadow domain binding // not recorded 1384802_at AI715326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715326 /DB_XREF=gi:5032579 /DB_XREF=UI-R-Y0-abo-b-03-0-UI.s1 /CLONE=UI-R-Y0-abo-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.41150.1 /TIER=ConsEnd /STK=2 /UG=Rn.41150 /UG_TITLE=ESTs AI715326 1384803_at BI283351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283351 /DB_XREF=gi:14935008 /DB_XREF=UI-R-DD0-bzz-b-03-0-UI.s1 /CLONE=UI-R-DD0-bzz-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.78283.1 /TIER=ConsEnd /STK=2 /UG=Rn.78283 /UG_TITLE=ESTs BI283351 late cornified envelope 1F Lce1f 499663 NM_001109188 1384804_at AI029751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029751 /DB_XREF=gi:4300721 /DB_XREF=UI-R-C0-jg-g-01-0-UI.s1 /CLONE=UI-R-C0-jg-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.18316.1 /TIER=ConsEnd /STK=2 /UG=Rn.18316 /UG_TITLE=ESTs AI029751 DNA (cytosine-5-)-methyltransferase 3 alpha Dnmt3a 444984 NM_001003957 /// NM_001003958 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006306 // DNA methylation // not recorded /// 0006306 // DNA methylation // inferred from sequence or structural similarity /// 0006306 // DNA methylation // inferred from electronic annotation /// 0006346 // methylation-dependent chromatin silencing // inferred from electronic annotation /// 0006346 // methylation-dependent chromatin silencing // not recorded /// 0006349 // regulation of gene expression by genetic imprinting // inferred from electronic annotation /// 0006349 // regulation of gene expression by genetic imprinting // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0010424 // DNA methylation on cytosine within a CG sequence // inferred from direct assay /// 0016568 // chromatin modification // inferred from electronic annotation /// 0043045 // DNA methylation involved in embryo development // inferred from electronic annotation /// 0043045 // DNA methylation involved in embryo development // not recorded /// 0043046 // DNA methylation involved in gamete generation // inferred from electronic annotation /// 0043046 // DNA methylation involved in gamete generation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0046498 // S-adenosylhomocysteine metabolic process // inferred from direct assay /// 0046499 // S-adenosylmethioninamine metabolic process // inferred from direct assay /// 0090116 // C-5 methylation of cytosine // not recorded 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000775 // chromosome, centromeric region // not recorded /// 0000791 // euchromatin // not recorded /// 0000791 // euchromatin // inferred from sequence or structural similarity /// 0000791 // euchromatin // inferred from electronic annotation /// 0000792 // heterochromatin // not recorded /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005720 // nuclear heterochromatin // inferred from electronic annotation /// 0005720 // nuclear heterochromatin // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded /// 0016363 // nuclear matrix // inferred from sequence or structural similarity /// 0016363 // nuclear matrix // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003886 // DNA (cytosine-5-)-methyltransferase activity // not recorded /// 0003886 // DNA (cytosine-5-)-methyltransferase activity // inferred from sequence or structural similarity /// 0003886 // DNA (cytosine-5-)-methyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0045322 // unmethylated CpG binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051718 // DNA (cytosine-5-)-methyltransferase activity, acting on CpG substrates // inferred from direct assay 1384805_at BF550925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550925 /DB_XREF=gi:11660655 /DB_XREF=UI-R-C1-kb-d-02-0-UI.r1 /CLONE=UI-R-C1-kb-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.15855.1 /TIER=ConsEnd /STK=2 /UG=Rn.15855 /UG_TITLE=ESTs BF550925 defensin beta 24 Defb24 641632 NM_001037508 1384806_at AI502875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502875 /DB_XREF=gi:4400726 /DB_XREF=UI-R-BT0-pn-d-10-0-UI.s1 /CLONE=UI-R-BT0-pn-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.27650.1 /TIER=ConsEnd /STK=2 /UG=Rn.27650 /UG_TITLE=ESTs AI502875 1384807_at AW530736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530736 /DB_XREF=gi:7173150 /DB_XREF=UI-R-BT1-akq-h-05-0-UI.s1 /CLONE=UI-R-BT1-akq-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.47536.1 /TIER=ConsEnd /STK=2 /UG=Rn.47536 /UG_TITLE=ESTs AW530736 1384808_at BF410724 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410724 /DB_XREF=gi:11398699 /DB_XREF=UI-R-CA0-bmc-b-04-0-UI.s1 /CLONE=UI-R-CA0-bmc-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.61768.1 /TIER=ConsEnd /STK=2 /UG=Rn.61768 /UG_TITLE=ESTs BF410724 storkhead box 2 Stox2 306459 NM_001134863 /// NM_173107 1384809_at AW526563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526563 /DB_XREF=gi:7168977 /DB_XREF=UI-R-BO1-ajc-e-04-0-UI.s1 /CLONE=UI-R-BO1-ajc-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.46237.1 /TIER=ConsEnd /STK=2 /UG=Rn.46237 /UG_TITLE=ESTs AW526563 G protein-coupled receptor 123 Gpr123 309097 NM_001107559 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1384810_at BF393740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393740 /DB_XREF=gi:11378608 /DB_XREF=UI-R-CA0-bgb-d-10-0-UI.s1 /CLONE=UI-R-CA0-bgb-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.58024.1 /TIER=ConsEnd /STK=2 /UG=Rn.58024 /UG_TITLE=ESTs, Weakly similar to T43437 hypothetical protein DKFZp564C047.1 (H.sapiens) BF393740 signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 Stam2 311030 NM_001012085 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384811_at AI136334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136334 /DB_XREF=gi:3637111 /DB_XREF=UI-R-C2p-oa-h-02-0-UI.s1 /CLONE=UI-R-C2p-oa-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.23672.1 /TIER=ConsEnd /STK=2 /UG=Rn.23672 /UG_TITLE=ESTs, Highly similar to HLF RAT HEPATIC LEUKEMIA FACTOR (R.norvegicus) AI136334 hepatic leukemia factor /// similar to hepatic leukemia factor Hlf /// LOC690286 363667 /// 690286 XM_001073964 /// XM_001081149 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1384812_at AI229409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229409 /DB_XREF=gi:3813296 /DB_XREF=EST226104 /CLONE=REMCE31 /FEA=EST /CNT=2 /TID=Rn.8638.2 /TIER=ConsEnd /STK=2 /UG=Rn.8638 /UG_TITLE=ESTs AI229409 1384813_at AI073023 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073023 /DB_XREF=gi:3399217 /DB_XREF=UI-R-Y0-md-f-10-0-UI.s1 /CLONE=UI-R-Y0-md-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.20335.1 /TIER=ConsEnd /STK=2 /UG=Rn.20335 /UG_TITLE=ESTs AI073023 1384814_at AI575616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575616 /DB_XREF=gi:4559992 /DB_XREF=UI-R-Y0-vi-c-01-0-UI.s1 /CLONE=UI-R-Y0-vi-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.26735.1 /TIER=ConsEnd /STK=2 /UG=Rn.26735 /UG_TITLE=ESTs AI575616 1384815_at AI145507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145507 /DB_XREF=gi:3667306 /DB_XREF=UI-R-BT0-py-a-02-0-UI.s1 /CLONE=UI-R-BT0-py-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.28507.1 /TIER=ConsEnd /STK=2 /UG=Rn.28507 /UG_TITLE=ESTs AI145507 1384816_at AI137518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137518 /DB_XREF=gi:3638295 /DB_XREF=UI-R-C2p-oc-c-10-0-UI.s1 /CLONE=UI-R-C2p-oc-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.27134.1 /TIER=ConsEnd /STK=2 /UG=Rn.27134 /UG_TITLE=ESTs, Highly similar to CXAR MOUSE COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR HOMOLOG PRECURSOR (M.musculus) AI137518 coxsackie virus and adenovirus receptor Cxadr 89843 NM_053570 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0045216 // cell-cell junction organization // inferred from electronic annotation /// 0045216 // cell-cell junction organization // not recorded /// 0048739 // cardiac muscle fiber development // inferred from electronic annotation /// 0048739 // cardiac muscle fiber development // not recorded /// 0060044 // negative regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060044 // negative regulation of cardiac muscle cell proliferation // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0005923 // tight junction // inferred from direct assay /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0001618 // viral receptor activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384817_at BF398996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398996 /DB_XREF=gi:11384000 /DB_XREF=UI-R-CA1-biz-i-24-0-UI.s1 /CLONE=UI-R-CA1-biz-i-24-0-UI /FEA=EST /CNT=2 /TID=Rn.59227.1 /TIER=ConsEnd /STK=2 /UG=Rn.59227 /UG_TITLE=ESTs BF398996 SHC (Src homology 2 domain containing) transforming protein 3 Shc3 114858 NM_001105743 0007265 // Ras protein signal transduction // not recorded /// 0007611 // learning or memory // inferred from electronic annotation /// 0007611 // learning or memory // not recorded /// 0023034 // intracellular signaling pathway // traceable author statement /// 0035249 // synaptic transmission, glutamatergic // inferred from electronic annotation /// 0035249 // synaptic transmission, glutamatergic // not recorded 0005829 // cytosol // not recorded 0001784 // phosphotyrosine binding // traceable author statement /// 0005102 // receptor binding // traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1384818_at BM383873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383873 /DB_XREF=gi:18183926 /DB_XREF=UI-R-DM1-ckc-g-16-0-UI.s1 /CLONE=UI-R-DM1-ckc-g-16-0-UI /FEA=EST /CNT=2 /TID=Rn.81338.1 /TIER=ConsEnd /STK=2 /UG=Rn.81338 /UG_TITLE=ESTs BM383873 myosin light chain kinase Mylk 288057 NM_001105874 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006936 // muscle contraction // not recorded 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1384819_at AI070395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070395 /DB_XREF=gi:3396646 /DB_XREF=UI-R-Y0-lt-f-11-0-UI.s1 /CLONE=UI-R-Y0-lt-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.19743.1 /TIER=ConsEnd /STK=2 /UG=Rn.19743 /UG_TITLE=ESTs AI070395 1384820_at AI237108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237108 /DB_XREF=gi:3830614 /DB_XREF=EST233670 /CLONE=ROVDO74 /FEA=EST /CNT=3 /TID=Rn.43392.1 /TIER=ConsEnd /STK=1 /UG=Rn.43392 /UG_TITLE=ESTs AI237108 1384821_at AI511134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511134 /DB_XREF=gi:4416833 /DB_XREF=UI-R-BT0-pp-g-07-0-UI.s1 /CLONE=UI-R-BT0-pp-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.34632.1 /TIER=ConsEnd /STK=1 /UG=Rn.34632 /UG_TITLE=ESTs AI511134 1384822_at AW521721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521721 /DB_XREF=gi:7164106 /DB_XREF=UI-R-BO0-agr-a-06-0-UI.s1 /CLONE=UI-R-BO0-agr-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.45231.1 /TIER=ConsEnd /STK=1 /UG=Rn.45231 /UG_TITLE=ESTs AW521721 1384823_at AW524486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524486 /DB_XREF=gi:7166871 /DB_XREF=UI-R-BO0-ahz-a-06-0-UI.s1 /CLONE=UI-R-BO0-ahz-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.45857.1 /TIER=ConsEnd /STK=1 /UG=Rn.45857 /UG_TITLE=ESTs AW524486 1384824_at BF408099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408099 /DB_XREF=gi:11396074 /DB_XREF=UI-R-BJ2-bqz-f-12-0-UI.s1 /CLONE=UI-R-BJ2-bqz-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.61115.1 /TIER=ConsEnd /STK=1 /UG=Rn.61115 /UG_TITLE=ESTs BF408099 protocadherin 18 Pcdh18 295027 NM_001100524 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1384825_at AI178814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178814 /DB_XREF=gi:3729452 /DB_XREF=EST222496 /CLONE=RSPBM93 /FEA=EST /CNT=3 /TID=Rn.23456.1 /TIER=ConsEnd /STK=1 /UG=Rn.23456 /UG_TITLE=ESTs, Moderately similar to A35364 carcinoembryonic antigen-related protein (R.norvegicus) AI178814 1384826_a_at AA849871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849871 /DB_XREF=gi:2937411 /DB_XREF=EST192638 /CLONE=RMUAJ93 /FEA=EST /CNT=3 /TID=Rn.22287.1 /TIER=ConsEnd /STK=1 /UG=Rn.22287 /UG_TITLE=ESTs AA849871 1384827_at AI044758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044758 /DB_XREF=gi:3291619 /DB_XREF=UI-R-C1-ki-a-03-0-UI.s1 /CLONE=UI-R-C1-ki-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.16022.1 /TIER=ConsEnd /STK=1 /UG=Rn.16022 /UG_TITLE=ESTs AI044758 polymerase (DNA directed), mu Polm 289757 NM_001011912 0006260 // DNA replication // inferred from electronic annotation /// 0016446 // somatic hypermutation of immunoglobulin genes // not recorded /// 0030183 // B cell differentiation // not recorded 0005622 // intracellular // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation /// 0003912 // DNA nucleotidylexotransferase activity // inferred from electronic annotation 1384828_at AI058952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058952 /DB_XREF=gi:3332729 /DB_XREF=UI-R-C1-lr-d-11-0-UI.s1 /CLONE=UI-R-C1-lr-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.12452.2 /TIER=ConsEnd /STK=1 /UG=Rn.12452 /UG_TITLE=ESTs AI058952 Kinesin family member 7 Kif7 293047 XM_001065361 /// XM_218828 0007018 // microtubule-based movement // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1384829_at AI454917 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454917 /DB_XREF=gi:4297079 /DB_XREF=UI-R-C2p-ql-c-07-0-UI.s1 /CLONE=UI-R-C2p-ql-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.23671.2 /TIER=ConsEnd /STK=1 /UG=Rn.23671 /UG_TITLE=ESTs AI454917 1384830_at AA965148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965148 /DB_XREF=gi:4280022 /DB_XREF=UI-R-C0-hc-h-03-0-UI.s1 /CLONE=UI-R-C0-hc-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.12020.1 /TIER=ConsEnd /STK=1 /UG=Rn.12020 /UG_TITLE=ESTs AA965148 dynein, axonemal, light intermediate chain 1 Dnali1 298524 NM_001031647 0030286 // dynein complex // inferred from electronic annotation 0003774 // motor activity // inferred from electronic annotation 1384831_at AI233155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233155 /DB_XREF=gi:3817035 /DB_XREF=EST229843 /CLONE=RKICL56 /FEA=EST /CNT=3 /TID=Rn.22708.1 /TIER=ConsEnd /STK=1 /UG=Rn.22708 /UG_TITLE=ESTs AI233155 solute carrier family 7, (cationic amino acid transporter, y+ system) member 13 Slc7a13 313089 NM_001012100 0006810 // transport // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation 1384832_at AI500895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI500895 /DB_XREF=gi:4398746 /DB_XREF=UI-R-C2p-rr-g-09-0-UI.s1 /CLONE=UI-R-C2p-rr-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.65367.1 /TIER=ConsEnd /STK=1 /UG=Rn.65367 /UG_TITLE=ESTs, Highly similar to S55553 LAR-interacting protein LIP1b (H.sapiens) AI500895 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 Ppfia1 293645 NM_001106320 0005515 // protein binding // not recorded 1384833_at AA801117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA801117 /DB_XREF=gi:2864072 /DB_XREF=EST190614 /CLONE=ROVAA67 /FEA=EST /CNT=3 /TID=Rn.24095.2 /TIER=ConsEnd /STK=1 /UG=Rn.24095 /UG_TITLE=ESTs AA801117 1384834_at AI028942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI028942 /DB_XREF=gi:4295132 /DB_XREF=UI-R-C0-io-b-12-0-UI.s1 /CLONE=UI-R-C0-io-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.18106.1 /TIER=ConsEnd /STK=1 /UG=Rn.18106 /UG_TITLE=ESTs AI028942 cordon-bleu homolog (mouse) Cobl 305497 NM_001107236 0001843 // neural tube closure // not recorded 0005515 // protein binding // not recorded 1384835_at AI547468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547468 /DB_XREF=gi:4464956 /DB_XREF=UI-R-C3-sl-c-09-0-UI.s1 /CLONE=UI-R-C3-sl-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.43862.1 /TIER=ConsEnd /STK=1 /UG=Rn.43862 /UG_TITLE=ESTs AI547468 1384836_at AI030853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030853 /DB_XREF=gi:3248679 /DB_XREF=UI-R-C0-jp-b-06-0-UI.s1 /CLONE=UI-R-C0-jp-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.18614.1 /TIER=ConsEnd /STK=1 /UG=Rn.18614 /UG_TITLE=ESTs AI030853 calmodulin-like 3 Calml3 307100 NM_001012054 0005509 // calcium ion binding // inferred from electronic annotation 1384837_at AI137672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137672 /DB_XREF=gi:3638449 /DB_XREF=UI-R-C0-ho-f-07-0-UI.s1 /CLONE=UI-R-C0-ho-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.23779.1 /TIER=ConsEnd /STK=1 /UG=Rn.23779 /UG_TITLE=ESTs AI137672 Cd69 molecule Cd69 29187 NM_134327 0001867 // complement activation, lectin pathway // traceable author statement 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005529 // sugar binding // inferred from electronic annotation 1384838_at AA924432 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924432 /DB_XREF=gi:4234571 /DB_XREF=UI-R-A1-dy-c-03-0-UI.s1 /CLONE=UI-R-A1-dy-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.15318.1 /TIER=ConsEnd /STK=1 /UG=Rn.15318 /UG_TITLE=ESTs, Weakly similar to RENAL SODIUM-DEPENDENT PHOSPHATE TRANSPORT PROTEIN 2 (R.norvegicus) AA924432 solute carrier family 34 (sodium phosphate), member 3 Slc34a3 246234 NM_139338 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // not recorded /// 0006817 // phosphate transport // inferred from mutant phenotype /// 0006817 // phosphate transport // not recorded /// 0006817 // phosphate transport // inferred from electronic annotation /// 0030643 // cellular phosphate ion homeostasis // inferred from electronic annotation /// 0030643 // cellular phosphate ion homeostasis // not recorded /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032026 // response to magnesium ion // inferred from expression pattern /// 0035435 // phosphate transmembrane transport // not recorded 0005903 // brush border // not recorded /// 0005903 // brush border // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0031526 // brush border membrane // inferred from direct assay 0005436 // sodium:phosphate symporter activity // inferred from mutant phenotype /// 0005436 // sodium:phosphate symporter activity // not recorded /// 0005436 // sodium:phosphate symporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0015321 // sodium-dependent phosphate transmembrane transporter activity // inferred from mutant phenotype /// 0015321 // sodium-dependent phosphate transmembrane transporter activity // not recorded /// 0015321 // sodium-dependent phosphate transmembrane transporter activity // inferred from electronic annotation 1384839_at AW522827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522827 /DB_XREF=gi:7165212 /DB_XREF=UI-R-BO0-ahn-c-02-0-UI.s1 /CLONE=UI-R-BO0-ahn-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.45487.1 /TIER=ConsEnd /STK=1 /UG=Rn.45487 /UG_TITLE=ESTs AW522827 1384840_at AA924754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924754 /DB_XREF=gi:4235945 /DB_XREF=UI-R-A1-ed-h-08-0-UI.s1 /CLONE=UI-R-A1-ed-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.21468.1 /TIER=ConsEnd /STK=1 /UG=Rn.21468 /UG_TITLE=ESTs AA924754 1384841_at AA858815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858815 /DB_XREF=gi:4229008 /DB_XREF=UI-R-A0-bn-h-02-0-UI.s1 /CLONE=UI-R-A0-bn-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.63919.1 /TIER=ConsEnd /STK=1 /UG=Rn.63919 /UG_TITLE=ESTs AA858815 1384842_s_at AI231531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231531 /DB_XREF=gi:3815411 /DB_XREF=EST228219 /CLONE=REMDL51 /FEA=EST /CNT=2 /TID=Rn.24581.1 /TIER=ConsEnd /STK=1 /UG=Rn.24581 /UG_TITLE=ESTs, Highly similar to Fas antigen (R.norvegicus) AI231531 Fas (TNF receptor superfamily, member 6) Fas 246097 NM_139194 0001666 // response to hypoxia // inferred from expression pattern /// 0002377 // immunoglobulin production // inferred from electronic annotation /// 0002377 // immunoglobulin production // not recorded /// 0003014 // renal system process // inferred from electronic annotation /// 0003014 // renal system process // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // traceable author statement /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from expression pattern /// 0006924 // activation-induced cell death of T cells // inferred from electronic annotation /// 0006924 // activation-induced cell death of T cells // not recorded /// 0006925 // inflammatory cell apoptosis // inferred from electronic annotation /// 0006925 // inflammatory cell apoptosis // not recorded /// 0006927 // transformed cell apoptosis // inferred from electronic annotation /// 0006927 // transformed cell apoptosis // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008624 // induction of apoptosis by extracellular signals // inferred from mutant phenotype /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0008624 // induction of apoptosis by extracellular signals // inferred from electronic annotation /// 0008625 // induction of apoptosis via death domain receptors // inferred from expression pattern /// 0008625 // induction of apoptosis via death domain receptors // not recorded /// 0008625 // induction of apoptosis via death domain receptors // inferred from electronic annotation /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0009636 // response to toxin // inferred from expression pattern /// 0009636 // response to toxin // not recorded /// 0009636 // response to toxin // inferred from electronic annotation /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010467 // gene expression // inferred from electronic annotation /// 0010467 // gene expression // not recorded /// 0010940 // positive regulation of necrotic cell death // not recorded /// 0019724 // B cell mediated immunity // inferred from electronic annotation /// 0019724 // B cell mediated immunity // not recorded /// 0031104 // dendrite regeneration // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042127 // regulation of cell proliferation // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0042698 // ovulation cycle // inferred from expression pattern /// 0043029 // T cell homeostasis // not recorded /// 0043029 // T cell homeostasis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045060 // negative thymic T cell selection // inferred from electronic annotation /// 0045060 // negative thymic T cell selection // not recorded /// 0045619 // regulation of lymphocyte differentiation // inferred from electronic annotation /// 0045619 // regulation of lymphocyte differentiation // not recorded /// 0045637 // regulation of myeloid cell differentiation // inferred from electronic annotation /// 0045637 // regulation of myeloid cell differentiation // not recorded /// 0048536 // spleen development // inferred from electronic annotation /// 0048536 // spleen development // not recorded /// 0050869 // negative regulation of B cell activation // inferred from electronic annotation /// 0050869 // negative regulation of B cell activation // not recorded /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded /// 0070848 // response to growth factor stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005886 // plasma membrane // not recorded /// 0005901 // caveola // inferred from expression pattern /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031264 // death-inducing signaling complex // not recorded /// 0031265 // CD95 death-inducing signaling complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004872 // receptor activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // non-traceable author statement /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005031 // tumor necrosis factor receptor activity // inferred from mutant phenotype /// 0005031 // tumor necrosis factor receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019900 // kinase binding // not recorded /// 0042802 // identical protein binding // not recorded 1384843_at AW531575 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531575 /DB_XREF=gi:7173989 /DB_XREF=UI-R-BT1-aku-e-07-0-UI.s1 /CLONE=UI-R-BT1-aku-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.47764.1 /TIER=ConsEnd /STK=1 /UG=Rn.47764 /UG_TITLE=ESTs, Weakly similar to LYC2 RAT LYSOZYME C, TYPE 2 PRECURSOR (R.norvegicus) AW531575 sperm acrosome associated 3 Spaca3 287557 NM_001105820 0016998 // cell wall macromolecule catabolic process // inferred from electronic annotation /// 0035036 // sperm-egg recognition // not recorded 0001669 // acrosomal vesicle // not recorded /// 0005764 // lysosome // not recorded /// 0030141 // stored secretory granule // not recorded 0003796 // lysozyme activity // inferred from electronic annotation /// 0003796 // lysozyme activity // not recorded 1384844_at AI060280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060280 /DB_XREF=gi:3334057 /DB_XREF=UI-R-C1-lm-a-08-0-UI.s1 /CLONE=UI-R-C1-lm-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.19412.2 /TIER=ConsEnd /STK=1 /UG=Rn.19412 /UG_TITLE=ESTs, Weakly similar to T15563 hypothetical protein C18F10.7 - Caenorhabditis elegans (C.elegans) AI060280 ankyrin repeat domain 13B Ankrd13b 360575 XM_001080794 /// XM_340854 1384845_at AI176044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176044 /DB_XREF=gi:3726682 /DB_XREF=EST219620 /CLONE=ROVBJ79 /FEA=EST /CNT=2 /TID=Rn.23265.3 /TIER=ConsEnd /STK=1 /UG=Rn.23265 /UG_TITLE=ESTs AI176044 1384846_at AI453919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI453919 /DB_XREF=gi:4290092 /DB_XREF=UI-R-BT0-pu-g-01-0-UI.s1 /CLONE=UI-R-BT0-pu-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.34550.1 /TIER=ConsEnd /STK=1 /UG=Rn.34550 /UG_TITLE=ESTs AI453919 0005488 // binding // inferred from electronic annotation 1384847_at AA924641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924641 /DB_XREF=gi:4235832 /DB_XREF=UI-R-A1-dz-b-07-0-UI.s1 /CLONE=UI-R-A1-dz-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.19548.2 /TIER=ConsEnd /STK=1 /UG=Rn.19548 /UG_TITLE=ESTs AA924641 1384848_at AA875016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875016 /DB_XREF=gi:4230898 /DB_XREF=UI-R-E0-cb-e-11-0-UI.s1 /CLONE=UI-R-E0-cb-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.32201.1 /TIER=ConsEnd /STK=1 /UG=Rn.32201 /UG_TITLE=ESTs AA875016 1384849_at AI230851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230851 /DB_XREF=gi:3814738 /DB_XREF=EST227546 /CLONE=REMDC04 /FEA=EST /CNT=2 /TID=Rn.64761.1 /TIER=ConsEnd /STK=1 /UG=Rn.64761 /UG_TITLE=ESTs AI230851 1384850_at AI710183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI710183 /DB_XREF=gi:4999959 /DB_XREF=UI-R-AF0-yd-a-08-0-UI.s1 /CLONE=UI-R-AF0-yd-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.41103.1 /TIER=ConsEnd /STK=1 /UG=Rn.41103 /UG_TITLE=ESTs AI710183 1384851_at AI548449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548449 /DB_XREF=gi:4465937 /DB_XREF=UI-R-C3-tl-d-09-0-UI.s1 /CLONE=UI-R-C3-tl-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.41836.1 /TIER=ConsEnd /STK=1 /UG=Rn.41836 /UG_TITLE=ESTs, Moderately similar to A56559 enhancer-trap-locus-1 protein - mouse (M.musculus) AI548449 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 Smarcad1 312398 NM_001107864 0000018 // regulation of DNA recombination // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1384852_at AI043615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043615 /DB_XREF=gi:3290941 /DB_XREF=UI-R-C1-jv-d-08-0-UI.s1 /CLONE=UI-R-C1-jv-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.15771.1 /TIER=ConsEnd /STK=1 /UG=Rn.15771 /UG_TITLE=ESTs AI043615 RAB27A, member RAS oncogene family Rab27a 50645 NM_017317 0006605 // protein targeting // inferred from electronic annotation /// 0006605 // protein targeting // not recorded /// 0006887 // exocytosis // not recorded /// 0006887 // exocytosis // traceable author statement /// 0006887 // exocytosis // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation /// 0007596 // blood coagulation // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0030318 // melanocyte differentiation // inferred from electronic annotation /// 0030318 // melanocyte differentiation // not recorded /// 0032400 // melanosome localization // inferred from electronic annotation /// 0032400 // melanosome localization // not recorded /// 0032402 // melanosome transport // inferred from electronic annotation /// 0032402 // melanosome transport // not recorded /// 0043316 // cytotoxic T cell degranulation // inferred from electronic annotation /// 0043316 // cytotoxic T cell degranulation // not recorded /// 0043320 // natural killer cell degranulation // inferred from electronic annotation /// 0043320 // natural killer cell degranulation // not recorded /// 0043473 // pigmentation // inferred from electronic annotation /// 0043473 // pigmentation // not recorded /// 0051875 // pigment granule localization // not recorded /// 0051875 // pigment granule localization // inferred from electronic annotation /// 0051904 // pigment granule transport // not recorded /// 0051904 // pigment granule transport // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay /// 0030141 // stored secretory granule // not recorded /// 0030141 // stored secretory granule // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0030667 // secretory granule membrane // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0042470 // melanosome // not recorded /// 0070382 // exocytic vesicle // inferred from electronic annotation /// 0070382 // exocytic vesicle // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0005525 // GTP binding // inferred from electronic annotation /// 0031489 // myosin V binding // inferred from electronic annotation /// 0031489 // myosin V binding // not recorded 1384853_at AW531612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531612 /DB_XREF=gi:7174026 /DB_XREF=UI-R-C4-aky-a-01-0-UI.s1 /CLONE=UI-R-C4-aky-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.76298.1 /TIER=ConsEnd /STK=1 /UG=Rn.76298 /UG_TITLE=ESTs AW531612 1384854_at AI072679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072679 /DB_XREF=gi:3398873 /DB_XREF=UI-R-C2-nk-d-12-0-UI.s1 /CLONE=UI-R-C2-nk-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.21804.1 /TIER=ConsEnd /STK=1 /UG=Rn.21804 /UG_TITLE=ESTs AI072679 1384855_at AA964289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964289 /DB_XREF=gi:4279165 /DB_XREF=UI-R-C0-gy-d-05-0-UI.s1 /CLONE=UI-R-C0-gy-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.7902.1 /TIER=ConsEnd /STK=1 /UG=Rn.7902 /UG_TITLE=ESTs AA964289 similar to RIKEN cDNA 1700009P17 RGD1562658 498278 NM_001109075 1384856_at AI705077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI705077 /DB_XREF=gi:4992977 /DB_XREF=UI-R-G0-uu-b-01-0-UI.s2 /CLONE=UI-R-G0-uu-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.65792.2 /TIER=ConsEnd /STK=1 /UG=Rn.65792 /UG_TITLE=ESTs, Weakly similar to F56A8.1.p (Caenorhabditis elegans) (C.elegans) AI705077 similar to mKIAA1623 protein RGD1563946 306340 XM_002725176 /// XM_002728392 1384857_at AI145240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145240 /DB_XREF=gi:3667039 /DB_XREF=UI-R-BT0-qf-c-04-0-UI.s1 /CLONE=UI-R-BT0-qf-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.27862.1 /TIER=ConsEnd /STK=1 /UG=Rn.27862 /UG_TITLE=ESTs, Weakly similar to plectin (Rattus norvegicus) (R.norvegicus) AI145240 A kinase (PRKA) anchor protein (yotiao) 9 Akap9 246150 NM_001037093 0000242 // pericentriolar material // not recorded /// 0000242 // pericentriolar material // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005813 // centrosome // not recorded /// 0005829 // cytosol // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1384858_a_at AA964590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964590 /DB_XREF=gi:4279464 /DB_XREF=UI-R-C0-gv-a-08-0-UI.s1 /CLONE=UI-R-C0-gv-a-08-0-UI /FEA=EST /CNT=1 /TID=Rn.24551.2 /TIER=ConsEnd /STK=1 /UG=Rn.24551 /UG_TITLE=ESTs, Weakly similar to S61987 hypothetical protein YOR004w - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AA964590 UTP23, small subunit (SSU) processome component, homolog (yeast) Utp23 299900 NM_001126266 1384859_at AI045935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045935 /DB_XREF=gi:3292754 /DB_XREF=UI-R-C1-km-d-06-0-UI.s1 /CLONE=UI-R-C1-km-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.20935.1 /TIER=ConsEnd /STK=1 /UG=Rn.20935 /UG_TITLE=ESTs AI045935 O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) Ogt 26295 NM_017107 0006493 // protein O-linked glycosylation // inferred from direct assay /// 0070207 // protein homotrimerization // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0070688 // MLL5-L complex // inferred from electronic annotation /// 0070688 // MLL5-L complex // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008375 // acetylglucosaminyltransferase activity // not recorded /// 0008375 // acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0016262 // protein N-acetylglucosaminyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0048029 // monosaccharide binding // inferred from direct assay 1384860_at AW527181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527181 /DB_XREF=gi:7169595 /DB_XREF=UI-R-BO1-ajm-d-10-0-UI.s1 /CLONE=UI-R-BO1-ajm-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.72917.1 /TIER=ConsEnd /STK=1 /UG=Rn.72917 /UG_TITLE=ESTs AW527181 zinc finger protein 84 Zfp84 308482 NM_001107500 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384861_at AW529591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529591 /DB_XREF=gi:7172005 /DB_XREF=UI-R-BT1-akn-a-09-0-UI.s1 /CLONE=UI-R-BT1-akn-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.47252.1 /TIER=ConsEnd /STK=1 /UG=Rn.47252 /UG_TITLE=ESTs AW529591 1384862_at AW521749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521749 /DB_XREF=gi:7164134 /DB_XREF=UI-R-BO0-agr-d-01-0-UI.s1 /CLONE=UI-R-BO0-agr-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.45244.1 /TIER=ConsEnd /STK=1 /UG=Rn.45244 /UG_TITLE=ESTs AW521749 1384863_at AW534032 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534032 /DB_XREF=gi:7176446 /DB_XREF=UI-R-C4-alm-c-04-0-UI.s1 /CLONE=UI-R-C4-alm-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.48239.1 /TIER=ConsEnd /STK=1 /UG=Rn.48239 /UG_TITLE=ESTs AW534032 copine VII Cpne7 361433 NM_001108454 1384864_at AW529714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529714 /DB_XREF=gi:7172128 /DB_XREF=UI-R-BU0-amr-e-02-0-UI.s1 /CLONE=UI-R-BU0-amr-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.47289.1 /TIER=ConsEnd /STK=1 /UG=Rn.47289 /UG_TITLE=ESTs AW529714 desert hedgehog homolog (Drosophila) Dhh 84380 NM_053367 0007154 // cell communication // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // traceable author statement /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from expression pattern /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007286 // spermatid development // inferred from electronic annotation /// 0007286 // spermatid development // not recorded /// 0022402 // cell cycle process // inferred from electronic annotation /// 0022402 // cell cycle process // not recorded /// 0030238 // male sex determination // inferred from electronic annotation /// 0030238 // male sex determination // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0033327 // Leydig cell differentiation // inferred from electronic annotation /// 0033327 // Leydig cell differentiation // not recorded /// 0042552 // myelination // inferred from expression pattern /// 0042552 // myelination // non-traceable author statement /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0050810 // regulation of steroid biosynthetic process // inferred from electronic annotation /// 0050810 // regulation of steroid biosynthetic process // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005102 // receptor binding // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1384865_at AW535518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535518 /DB_XREF=gi:7177932 /DB_XREF=UI-R-C4-alx-b-12-0-UI.s1 /CLONE=UI-R-C4-alx-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.48510.1 /TIER=ConsEnd /STK=1 /UG=Rn.48510 /UG_TITLE=ESTs AW535518 1384866_at AI070096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070096 /DB_XREF=gi:3396347 /DB_XREF=UI-R-Y0-ls-g-03-0-UI.s1 /CLONE=UI-R-Y0-ls-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.19654.1 /TIER=ConsEnd /STK=1 /UG=Rn.19654 /UG_TITLE=ESTs AI070096 ectonucleoside triphosphate diphosphohydrolase 3 Entpd3 316077 NM_178106 0009134 // nucleoside diphosphate catabolic process // inferred from electronic annotation /// 0009134 // nucleoside diphosphate catabolic process // not recorded /// 0009143 // nucleoside triphosphate catabolic process // inferred from electronic annotation /// 0009143 // nucleoside triphosphate catabolic process // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0008253 // 5'-nucleotidase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017110 // nucleoside-diphosphatase activity // inferred from electronic annotation /// 0017110 // nucleoside-diphosphatase activity // not recorded /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // not recorded 1384867_at AI535471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535471 /DB_XREF=gi:4449606 /DB_XREF=UI-R-C3-sy-e-03-0-UI.s1 /CLONE=UI-R-C3-sy-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.34832.1 /TIER=ConsEnd /STK=1 /UG=Rn.34832 /UG_TITLE=ESTs, Weakly similar to T21659 hypothetical protein F32D8.4 - Caenorhabditis elegans (C.elegans) AI535471 Yip1 domain family, member 7 Yipf7 364147 NM_001108861 0016020 // membrane // inferred from electronic annotation 1384868_at AA866269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866269 /DB_XREF=gi:4229156 /DB_XREF=UI-R-A0-bg-a-11-0-UI.s1 /CLONE=UI-R-A0-bg-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.42787.1 /TIER=ConsEnd /STK=1 /UG=Rn.42787 /UG_TITLE=ESTs AA866269 1384869_at AW531594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531594 /DB_XREF=gi:7174008 /DB_XREF=UI-R-BT1-aku-g-04-0-UI.s1 /CLONE=UI-R-BT1-aku-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.47771.1 /TIER=ConsEnd /STK=1 /UG=Rn.47771 /UG_TITLE=ESTs, Weakly similar to T23406 hypothetical protein K07C5.5 - Caenorhabditis elegans (C.elegans) AW531594 epoxide hydrolase 4 Ephx4 289440 NM_001105994 0003824 // catalytic activity // inferred from electronic annotation 1384870_at AW529061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529061 /DB_XREF=gi:7171515 /DB_XREF=UI-R-BO1-ajp-a-12-0-UI.s1 /CLONE=UI-R-BO1-ajp-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.47087.1 /TIER=ConsEnd /STK=1 /UG=Rn.47087 /UG_TITLE=ESTs AW529061 1384871_at AA901035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901035 /DB_XREF=gi:4233532 /DB_XREF=UI-R-A1-do-h-07-0-UI.s1 /CLONE=UI-R-A1-do-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.15167.1 /TIER=ConsEnd /STK=1 /UG=Rn.15167 /UG_TITLE=ESTs, Weakly similar to OXYB_HUMAN OXYSTEROL-BINDING PROTEI (H.sapiens) AA901035 oxysterol binding protein-like 6 Osbpl6 311129 NM_001107735 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation 1384872_at AI556568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556568 /DB_XREF=gi:4488937 /DB_XREF=UI-R-C2p-rm-g-06-0-UI.s1 /CLONE=UI-R-C2p-rm-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.72635.1 /TIER=ConsEnd /STK=1 /UG=Rn.72635 /UG_TITLE=ESTs AI556568 1384873_at AI555547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555547 /DB_XREF=gi:4487910 /DB_XREF=UI-R-C2p-qr-d-06-0-UI.s1 /CLONE=UI-R-C2p-qr-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.76183.1 /TIER=ConsEnd /STK=1 /UG=Rn.76183 /UG_TITLE=ESTs AI555547 1384874_at BF558516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558516 /DB_XREF=gi:11668246 /DB_XREF=UI-R-C1-ld-d-11-0-UI.r1 /CLONE=UI-R-C1-ld-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.19149.1 /TIER=ConsEnd /STK=1 /UG=Rn.19149 /UG_TITLE=ESTs BF558516 Similar to MIR-interacting saposin-like protein precursor (Transmembrane protein 4) (Putative secreted protein ZSIG9) LOC685001 685001 XM_001061855 1384875_at AW529951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529951 /DB_XREF=gi:7172365 /DB_XREF=UI-R-C4-alc-b-12-0-UI.s1 /CLONE=UI-R-C4-alc-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.47343.1 /TIER=ConsEnd /STK=1 /UG=Rn.47343 /UG_TITLE=ESTs AW529951 1384876_at AW529993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529993 /DB_XREF=gi:7172407 /DB_XREF=UI-R-C4-alc-g-08-0-UI.s1 /CLONE=UI-R-C4-alc-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.47355.1 /TIER=ConsEnd /STK=1 /UG=Rn.47355 /UG_TITLE=ESTs AW529993 RAD9 homolog B (S. cerevisiae) Rad9b 363924 NM_001030042 0006260 // DNA replication // not recorded /// 0006281 // DNA repair // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384877_at AI072405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072405 /DB_XREF=gi:3398599 /DB_XREF=UI-R-C2-ne-f-07-0-UI.s1 /CLONE=UI-R-C2-ne-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.20144.1 /TIER=ConsEnd /STK=1 /UG=Rn.20144 /UG_TITLE=ESTs AI072405 aquaporin 11 Aqp11 286758 NM_173105 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from direct assay /// 0006811 // ion transport // not recorded /// 0006833 // water transport // inferred from direct assay /// 0006833 // water transport // not recorded /// 0015793 // glycerol transport // inferred from direct assay /// 0015793 // glycerol transport // not recorded /// 0015840 // urea transport // inferred from direct assay /// 0015840 // urea transport // not recorded /// 0048388 // endosomal lumen acidification // inferred from electronic annotation /// 0048388 // endosomal lumen acidification // not recorded /// 0051260 // protein homooligomerization // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation 1384878_at AI501085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501085 /DB_XREF=gi:4398936 /DB_XREF=UI-R-C2p-rw-c-08-0-UI.s1 /CLONE=UI-R-C2p-rw-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.35260.1 /TIER=ConsEnd /STK=1 /UG=Rn.35260 /UG_TITLE=ESTs, Highly similar to NMT2 MOUSE GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE 2 (M.musculus) AI501085 N-myristoyltransferase 2 Nmt2 291318 NM_207590 0006499 // N-terminal protein myristoylation // inferred from electronic annotation /// 0006499 // N-terminal protein myristoylation // traceable author statement /// 0018008 // N-terminal peptidyl-glycine N-myristoylation // traceable author statement 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // traceable author statement /// 0005794 // Golgi apparatus // not recorded 0004379 // glycylpeptide N-tetradecanoyltransferase activity // inferred from electronic annotation /// 0004379 // glycylpeptide N-tetradecanoyltransferase activity // traceable author statement /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1384879_at AI045958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045958 /DB_XREF=gi:3290870 /DB_XREF=UI-R-C1-jt-g-04-0-UI.s1 /CLONE=UI-R-C1-jt-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.15744.1 /TIER=ConsEnd /STK=1 /UG=Rn.15744 /UG_TITLE=ESTs AI045958 tRNA phosphotransferase 1 Trpt1 293704 NM_001106331 0006388 // tRNA splicing, via endonucleolytic cleavage and ligation // inferred from electronic annotation /// 0006388 // tRNA splicing, via endonucleolytic cleavage and ligation // not recorded /// 0008152 // metabolic process // not recorded 0008665 // 2'-phosphotransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation 1384880_at AW527941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527941 /DB_XREF=gi:7170355 /DB_XREF=UI-R-BT1-akb-h-07-0-UI.s1 /CLONE=UI-R-BT1-akb-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.46710.1 /TIER=ConsEnd /STK=1 /UG=Rn.46710 /UG_TITLE=ESTs AW527941 hypothetical LOC295483 RGD1306704 295483 XM_215709 1384881_at AW532959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532959 /DB_XREF=gi:7175373 /DB_XREF=UI-R-BU0-amy-b-07-0-UI.s1 /CLONE=UI-R-BU0-amy-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.48042.1 /TIER=ConsEnd /STK=1 /UG=Rn.48042 /UG_TITLE=ESTs AW532959 zinc finger, DHHC-type containing 19 Zdhhc19 288045 NM_001039259 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384882_at AI229056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229056 /DB_XREF=gi:3812943 /DB_XREF=EST225751 /CLONE=RBRDD43 /FEA=EST /CNT=2 /TID=Rn.24395.1 /TIER=ConsEnd /STK=1 /UG=Rn.24395 /UG_TITLE=ESTs AI229056 1384883_at AA858571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858571 /DB_XREF=gi:4229903 /DB_XREF=UI-R-E0-bq-f-03-0-UI.s1 /CLONE=UI-R-E0-bq-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.82.1 /TIER=ConsEnd /STK=1 /UG=Rn.82 /UG_TITLE=ESTs AA858571 1384884_at AW528484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528484 /DB_XREF=gi:7170898 /DB_XREF=UI-R-BO1-ajl-h-07-0-UI.s1 /CLONE=UI-R-BO1-ajl-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.46896.1 /TIER=ConsEnd /STK=1 /UG=Rn.46896 /UG_TITLE=ESTs, Moderately similar to ERH_HUMAN ENHANCER OF RUDIMENTARY HOMOLOG (M.musculus) AW528484 similar to RIKEN cDNA 1700018B24 RGD1307595 295019 NM_001134511 0007049 // cell cycle // inferred from electronic annotation 1384885_at AW532312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532312 /DB_XREF=gi:7174726 /DB_XREF=UI-R-BT1-akc-a-07-0-UI.s1 /CLONE=UI-R-BT1-akc-a-07-0-UI /FEA=EST /CNT=2 /TID=Rn.47921.1 /TIER=ConsEnd /STK=1 /UG=Rn.47921 /UG_TITLE=ESTs AW532312 tektin 2 (testicular) Tekt2 298532 NM_001011977 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0001539 // ciliary or flagellar motility // inferred from electronic annotation /// 0001539 // ciliary or flagellar motility // not recorded /// 0030317 // sperm motility // inferred from electronic annotation /// 0030317 // sperm motility // not recorded 0005874 // microtubule // inferred from electronic annotation 1384886_at AW523423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523423 /DB_XREF=gi:7165808 /DB_XREF=UI-R-BO0-aho-a-09-0-UI.s1 /CLONE=UI-R-BO0-aho-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.45638.1 /TIER=ConsEnd /STK=1 /UG=Rn.45638 /UG_TITLE=ESTs AW523423 1384887_at AI070185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070185 /DB_XREF=gi:3396436 /DB_XREF=UI-R-C1-lp-f-11-0-UI.s1 /CLONE=UI-R-C1-lp-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.19684.1 /TIER=ConsEnd /STK=1 /UG=Rn.19684 /UG_TITLE=ESTs AI070185 1384888_at AI547911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547911 /DB_XREF=gi:4465399 /DB_XREF=UI-R-C3-so-f-01-0-UI.s1 /CLONE=UI-R-C3-so-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.72499.1 /TIER=ConsEnd /STK=1 /UG=Rn.72499 /UG_TITLE=ESTs, Moderately similar to PC4427 Nck, Ash and phospholipase C gamma-binding protein 4 (H.sapiens) AI547911 suppressor of cytokine signaling 7 Socs7 287659 XM_001081372 /// XM_213443 0008286 // insulin receptor signaling pathway // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0045444 // fat cell differentiation // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384889_at AI535467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535467 /DB_XREF=gi:4449602 /DB_XREF=UI-R-C3-sy-d-11-0-UI.s1 /CLONE=UI-R-C3-sy-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.34831.1 /TIER=ConsEnd /STK=1 /UG=Rn.34831 /UG_TITLE=ESTs AI535467 1384890_at AA998678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998678 /DB_XREF=gi:4291517 /DB_XREF=UI-R-C0-ig-h-01-0-UI.s1 /CLONE=UI-R-C0-ig-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.72683.1 /TIER=ConsEnd /STK=1 /UG=Rn.72683 /UG_TITLE=ESTs, Highly similar to Enx-2 (M.musculus) AA998678 enhancer of zeste homolog 1 (Drosophila) Ezh1 303547 NM_001107051 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0035098 // ESC/E(Z) complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384891_at AI549181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549181 /DB_XREF=gi:4466669 /DB_XREF=UI-R-C3-ts-e-10-0-UI.s1 /CLONE=UI-R-C3-ts-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.76172.1 /TIER=ConsEnd /STK=1 /UG=Rn.76172 /UG_TITLE=ESTs AI549181 similar to hypothetical protein FLJ11193 RGD1306502 310158 NM_001107654 1384892_at AI029798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029798 /DB_XREF=gi:4301050 /DB_XREF=UI-R-C0-iz-h-04-0-UI.s1 /CLONE=UI-R-C0-iz-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.33281.1 /TIER=ConsEnd /STK=1 /UG=Rn.33281 /UG_TITLE=ESTs AI029798 1384893_at AI045194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045194 /DB_XREF=gi:3292013 /DB_XREF=UI-R-C1-ju-c-08-0-UI.s1 /CLONE=UI-R-C1-ju-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.16148.1 /TIER=ConsEnd /STK=1 /UG=Rn.16148 /UG_TITLE=ESTs AI045194 1384894_at AI577591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577591 /DB_XREF=gi:4561967 /DB_XREF=UI-R-Y0-vk-f-12-0-UI.s1 /CLONE=UI-R-Y0-vk-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.38099.1 /TIER=ConsEnd /STK=1 /UG=Rn.38099 /UG_TITLE=ESTs, Moderately similar to ORP1_HUMAN OXYGEN-REGULATED PROTEIN 1 (H.sapiens) AI577591 retinitis pigmentosa 1 (human) Rp1 681377 NM_001195676 /// XM_001061481 /// XM_002726487 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005625 // soluble fraction // not recorded /// 0005929 // cilium // not recorded 1384895_at AI044507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044507 /DB_XREF=gi:3291368 /DB_XREF=UI-R-C1-jw-h-12-0-UI.s1 /CLONE=UI-R-C1-jw-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.20763.1 /TIER=ConsEnd /STK=1 /UG=Rn.20763 /UG_TITLE=ESTs, Highly similar to T00262 hypothetical protein KIAA0602 (H.sapiens) AI044507 hypothetical protein LOC691631 LOC691631 691631 XM_002726779 /// XM_002729729 1384896_at AA997660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997660 /DB_XREF=gi:4280942 /DB_XREF=UI-R-C0-hm-c-01-0-UI.s1 /CLONE=UI-R-C0-hm-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.12536.3 /TIER=ConsEnd /STK=1 /UG=Rn.12536 /UG_TITLE=ESTs AA997660 1384897_at AA858696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858696 /DB_XREF=gi:4228889 /DB_XREF=UI-R-A0-be-h-05-0-UI.s1 /CLONE=UI-R-A0-be-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.16878.1 /TIER=ConsEnd /STK=1 /UG=Rn.16878 /UG_TITLE=ESTs AA858696 1384898_at AA925676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925676 /DB_XREF=gi:4236867 /DB_XREF=UI-R-A1-er-c-09-0-UI.s1 /CLONE=UI-R-A1-er-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.15574.1 /TIER=ConsEnd /STK=1 /UG=Rn.15574 /UG_TITLE=ESTs AA925676 1384899_at AA996921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996921 /DB_XREF=gi:4280685 /DB_XREF=UI-R-C0-hj-f-07-0-UI.s1 /CLONE=UI-R-C0-hj-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.33062.1 /TIER=ConsEnd /STK=1 /UG=Rn.33062 /UG_TITLE=ESTs AA996921 1384900_at AW530806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530806 /DB_XREF=gi:7173220 /DB_XREF=UI-R-C4-alb-f-09-0-UI.s1 /CLONE=UI-R-C4-alb-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.47548.1 /TIER=ConsEnd /STK=1 /UG=Rn.47548 /UG_TITLE=ESTs, Weakly similar to T33987 hypothetical protein T12B3.4 - Caenorhabditis elegans (C.elegans) AW530806 MOB1, Mps One Binder kinase activator-like 2A (yeast) Mobkl2a 362833 NM_001108734 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1384901_at BF523017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523017 /DB_XREF=gi:11631032 /DB_XREF=UI-R-C2p-rg-e-10-0-UI.r1 /CLONE=UI-R-C2p-rg-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.38850.1 /TIER=ConsEnd /STK=1 /UG=Rn.38850 /UG_TITLE=ESTs BF523017 1384902_at BF545275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545275 /DB_XREF=gi:11636382 /DB_XREF=UI-R-C0-jq-e-09-0-UI.r1 /CLONE=UI-R-C0-jq-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.20922.1 /TIER=ConsEnd /STK=1 /UG=Rn.20922 /UG_TITLE=ESTs BF545275 1384903_at AI535168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535168 /DB_XREF=gi:4449303 /DB_XREF=UI-R-C3-sq-d-05-0-UI.s1 /CLONE=UI-R-C3-sq-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.72502.1 /TIER=ConsEnd /STK=1 /UG=Rn.72502 /UG_TITLE=ESTs, Weakly similar to ALANINE AMINOTRANSFERASE (R.norvegicus) AI535168 glutamic pyruvate transaminase (alanine aminotransferase) 2 Gpt2 307759 NM_001012057 0006103 // 2-oxoglutarate metabolic process // not recorded /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0042851 // L-alanine metabolic process // not recorded 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004021 // L-alanine:2-oxoglutarate aminotransferase activity // not recorded /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1384904_at AW527233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527233 /DB_XREF=gi:7169647 /DB_XREF=UI-R-BO1-ajs-a-05-0-UI.s1 /CLONE=UI-R-BO1-ajs-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.46463.1 /TIER=ConsEnd /STK=1 /UG=Rn.46463 /UG_TITLE=ESTs, Weakly similar to S58984 development protein tolkin (D.melanogaster) AW527233 neuropilin (NRP) and tolloid (TLL)-like 2 Neto2 307757 NM_001107417 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1384905_at AI578098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578098 /DB_XREF=gi:4562474 /DB_XREF=UI-R-C3-tk-e-12-0-UI.s2 /CLONE=UI-R-C3-tk-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.39143.1 /TIER=ConsEnd /STK=1 /UG=Rn.39143 /UG_TITLE=ESTs, Weakly similar to A46274 HIV gp120-binding C-type lectin (H.sapiens) AI578098 CD209g molecule Cd209g 688750 XM_001068161 /// XM_002724770 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1384906_at AI577346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577346 /DB_XREF=gi:4561722 /DB_XREF=UI-R-Y0-vn-c-01-0-UI.s1 /CLONE=UI-R-Y0-vn-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.39364.2 /TIER=ConsEnd /STK=1 /UG=Rn.39364 /UG_TITLE=ESTs, Weakly similar to MRP5_RAT MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 5 (R.norvegicus) AI577346 delta-like 2 homolog (Drosophila) Dlk2 316232 NM_001108202 0045598 // regulation of fat cell differentiation // not recorded 0005509 // calcium ion binding // inferred from electronic annotation 1384907_at AI411835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411835 /DB_XREF=gi:4255339 /DB_XREF=EST240129 /CLONE=RKIEV25 /FEA=EST /CNT=2 /TID=Rn.44083.1 /TIER=ConsEnd /STK=1 /UG=Rn.44083 /UG_TITLE=ESTs AI411835 1384908_at AI715762 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715762 /DB_XREF=gi:5033015 /DB_XREF=UI-R-Y0-abt-g-09-0-UI.s1 /CLONE=UI-R-Y0-abt-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.41501.1 /TIER=ConsEnd /STK=1 /UG=Rn.41501 /UG_TITLE=ESTs AI715762 tau tubulin kinase 2 Ttbk2 311349 NM_001107766 0006468 // protein phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1384909_at AW530537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530537 /DB_XREF=gi:7172951 /DB_XREF=UI-R-BT1-akp-c-08-0-UI.s1 /CLONE=UI-R-BT1-akp-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.47475.1 /TIER=ConsEnd /STK=1 /UG=Rn.47475 /UG_TITLE=ESTs AW530537 1384910_at AI454016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454016 /DB_XREF=gi:4290773 /DB_XREF=UI-R-BT0-qa-b-09-0-UI.s1 /CLONE=UI-R-BT0-qa-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.34565.1 /TIER=ConsEnd /STK=1 /UG=Rn.34565 /UG_TITLE=ESTs AI454016 leucine-rich repeats and transmembrane domains 2 Lrtm2 680883 NM_001109430 0005515 // protein binding // inferred from electronic annotation 1384911_at AI547806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547806 /DB_XREF=gi:4465294 /DB_XREF=UI-R-C3-sk-b-01-0-UI.s1 /CLONE=UI-R-C3-sk-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.41827.1 /TIER=ConsEnd /STK=1 /UG=Rn.41827 /UG_TITLE=ESTs, Moderately similar to ARACHIDONATE 12-LIPOXYGENASE (R.norvegicus) AI547806 arachidonate 12-lipoxygenase, epidermal Alox12e 303252 NM_001107014 0006691 // leukotriene metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0016165 // lipoxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384912_at AI045525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045525 /DB_XREF=gi:3292344 /DB_XREF=UI-R-C1-jz-b-02-0-UI.s2 /CLONE=UI-R-C1-jz-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.20888.1 /TIER=ConsEnd /STK=1 /UG=Rn.20888 /UG_TITLE=ESTs AI045525 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation 1384913_at AI030882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030882 /DB_XREF=gi:3248708 /DB_XREF=UI-R-C0-jp-h-01-0-UI.s1 /CLONE=UI-R-C0-jp-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.18623.1 /TIER=ConsEnd /STK=1 /UG=Rn.18623 /UG_TITLE=ESTs AI030882 1384914_at BF556255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556255 /DB_XREF=gi:11665985 /DB_XREF=UI-R-A1-ee-g-01-0-UI.r1 /CLONE=UI-R-A1-ee-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.15486.1 /TIER=ConsEnd /STK=1 /UG=Rn.15486 /UG_TITLE=ESTs, Weakly similar to FML1 MOUSE FMLP-RELATED RECEPTOR I (M.musculus) BF556255 1384915_at AI547895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547895 /DB_XREF=gi:4465383 /DB_XREF=UI-R-C3-so-c-10-0-UI.s1 /CLONE=UI-R-C3-so-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.41681.1 /TIER=ConsEnd /STK=1 /UG=Rn.41681 /UG_TITLE=ESTs AI547895 intraflagellar transport 88 homolog (Chlamydomonas) Ift88 305918 NM_001107266 0001701 // in utero embryonic development // not recorded /// 0007224 // smoothened signaling pathway // not recorded /// 0007368 // determination of left/right symmetry // not recorded /// 0007399 // nervous system development // not recorded /// 0007420 // brain development // not recorded /// 0009887 // organ morphogenesis // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0016485 // protein processing // not recorded /// 0021537 // telencephalon development // not recorded /// 0030324 // lung development // not recorded /// 0042487 // regulation of odontogenesis of dentine-containing tooth // not recorded /// 0042733 // embryonic digit morphogenesis // not recorded /// 0045862 // positive regulation of proteolysis // not recorded /// 0048568 // embryonic organ development // not recorded /// 0048598 // embryonic morphogenesis // not recorded /// 0048853 // forebrain morphogenesis // not recorded /// 0060271 // cilium morphogenesis // not recorded /// 0060411 // cardiac septum morphogenesis // not recorded /// 0060426 // lung vasculature development // not recorded 0005929 // cilium // not recorded /// 0005930 // axoneme // not recorded /// 0005932 // microtubule basal body // not recorded /// 0019861 // flagellum // inferred from electronic annotation /// 0031512 // motile primary cilium // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384916_at AI717256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717256 /DB_XREF=gi:5034512 /DB_XREF=UI-R-Y0-aca-a-03-0-UI.s1 /CLONE=UI-R-Y0-aca-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.40898.1 /TIER=ConsEnd /STK=1 /UG=Rn.40898 /UG_TITLE=ESTs AI717256 1384917_at BF547287 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547287 /DB_XREF=gi:11638394 /DB_XREF=UI-R-C2p-ra-e-02-0-UI.r1 /CLONE=UI-R-C2p-ra-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.38826.1 /TIER=ConsEnd /STK=1 /UG=Rn.38826 /UG_TITLE=ESTs BF547287 cyclin O Ccno 499528 NM_001109175 0006284 // base-excision repair // not recorded /// 0009790 // embryo development // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0045008 // depyrimidination // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0004844 // uracil DNA N-glycosylase activity // not recorded 1384918_at AI511132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511132 /DB_XREF=gi:4416831 /DB_XREF=UI-R-BT0-pp-e-07-0-UI.s1 /CLONE=UI-R-BT0-pp-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.34631.1 /TIER=ConsEnd /STK=1 /UG=Rn.34631 /UG_TITLE=ESTs AI511132 LOC362433 RGD1307916 362433 NM_001108645 1384919_at AI071689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071689 /DB_XREF=gi:3397904 /DB_XREF=UI-R-C2-nc-a-07-0-UI.s1 /CLONE=UI-R-C2-nc-a-07-0-UI /FEA=EST /CNT=2 /TID=Rn.20603.1 /TIER=ConsEnd /STK=1 /UG=Rn.20603 /UG_TITLE=ESTs AI071689 1384920_at AI030026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030026 /DB_XREF=gi:3247852 /DB_XREF=UI-R-C0-ja-e-01-0-UI.s1 /CLONE=UI-R-C0-ja-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.18389.1 /TIER=ConsEnd /STK=1 /UG=Rn.18389 /UG_TITLE=ESTs AI030026 1384921_at AW524713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524713 /DB_XREF=gi:7167098 /DB_XREF=UI-R-BO0-aib-e-06-0-UI.s1 /CLONE=UI-R-BO0-aib-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.45913.1 /TIER=ConsEnd /STK=1 /UG=Rn.45913 /UG_TITLE=ESTs, Weakly similar to CTXN RAT CORTEXIN (R.norvegicus) AW524713 cortexin 2 Ctxn2 100302373 NM_001162935 0031224 // intrinsic to membrane // inferred from electronic annotation 1384922_at AW527642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527642 /DB_XREF=gi:7170056 /DB_XREF=UI-R-BT1-ajz-e-11-0-UI.s1 /CLONE=UI-R-BT1-ajz-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.46605.1 /TIER=ConsEnd /STK=1 /UG=Rn.46605 /UG_TITLE=ESTs AW527642 1384923_at AI137998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137998 /DB_XREF=gi:3638775 /DB_XREF=UI-R-C2p-oi-b-09-0-UI.s1 /CLONE=UI-R-C2p-oi-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.27558.1 /TIER=ConsEnd /STK=1 /UG=Rn.27558 /UG_TITLE=ESTs AI137998 similar to RIKEN cDNA 6430571L13 gene; similar to g20 protein RGD1307461 300990 NM_001106854 1384924_at BF551984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551984 /DB_XREF=gi:11661714 /DB_XREF=UI-R-C2p-od-d-01-0-UI.r1 /CLONE=UI-R-C2p-od-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.63958.1 /TIER=ConsEnd /STK=1 /UG=Rn.63958 /UG_TITLE=ESTs BF551984 prion protein 2 (dublet) Prnd 113910 NM_001102431 0006878 // cellular copper ion homeostasis // not recorded /// 0006878 // cellular copper ion homeostasis // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005507 // copper ion binding // not recorded /// 0005507 // copper ion binding // inferred from electronic annotation 1384925_at AI045021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045021 /DB_XREF=gi:3291840 /DB_XREF=UI-R-C1-kf-b-01-0-UI.s1 /CLONE=UI-R-C1-kf-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.16085.1 /TIER=ConsEnd /STK=1 /UG=Rn.16085 /UG_TITLE=ESTs AI045021 1384926_at AA964975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964975 /DB_XREF=gi:4279849 /DB_XREF=UI-R-C0-hb-d-04-0-UI.s1 /CLONE=UI-R-C0-hb-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.11969.1 /TIER=ConsEnd /STK=1 /UG=Rn.11969 /UG_TITLE=ESTs AA964975 1384927_at AI230430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230430 /DB_XREF=gi:3814317 /DB_XREF=EST227125 /CLONE=REMCW42 /FEA=EST /CNT=2 /TID=Rn.9172.2 /TIER=ConsEnd /STK=1 /UG=Rn.9172 /UG_TITLE=ESTs AI230430 tubulin, beta 4 Tubb4 29213 NM_080882 0007017 // microtubule-based process // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1384928_at AA849895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849895 /DB_XREF=gi:2937435 /DB_XREF=EST192662 /CLONE=RMUAK26 /FEA=EST /CNT=2 /TID=Rn.6527.1 /TIER=ConsEnd /STK=1 /UG=Rn.6527 /UG_TITLE=ESTs, Weakly similar to A57291 cytokine inducible nuclear protein C193 (H.sapiens) AA849895 ankyrin repeat domain 2 (stretch responsive muscle) Ankrd2 309374 NM_001107589 0030017 // sarcomere // not recorded /// 0031674 // I band // not recorded 1384929_at AI072252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072252 /DB_XREF=gi:3398446 /DB_XREF=UI-R-C2-mu-h-06-0-UI.s1 /CLONE=UI-R-C2-mu-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.20102.1 /TIER=ConsEnd /STK=1 /UG=Rn.20102 /UG_TITLE=ESTs AI072252 apolipoprotein B48 receptor Apob48r 499264 NM_001109154 0006641 // triglyceride metabolic process // not recorded /// 0007165 // signal transduction // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0030229 // very-low-density lipoprotein receptor activity // not recorded 1384930_at AI071862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071862 /DB_XREF=gi:3398077 /DB_XREF=UI-R-C2-nh-g-04-0-UI.s1 /CLONE=UI-R-C2-nh-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.22007.1 /TIER=ConsEnd /STK=1 /UG=Rn.22007 /UG_TITLE=ESTs AI071862 similar to coiled-coil domain containing 13 LOC687047 687047 XM_001078641 1384931_at AI136248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136248 /DB_XREF=gi:3637025 /DB_XREF=UI-R-C2p-nv-g-02-0-UI.s1 /CLONE=UI-R-C2p-nv-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.27070.1 /TIER=ConsEnd /STK=1 /UG=Rn.27070 /UG_TITLE=ESTs, Highly similar to CA1B MOUSE COLLAGEN ALPHA 1(XI) CHAIN PRECURSOR (M.musculus) AI136248 collagen, type XI, alpha 1 Col11a1 25654 XM_001072431 /// XM_001072520 /// XM_001076840 /// XM_002726064 /// XM_002726065 /// XM_002729104 /// XM_002729105 /// XM_342325 0001502 // cartilage condensation // inferred from electronic annotation /// 0001502 // cartilage condensation // not recorded /// 0001503 // ossification // inferred from expression pattern /// 0002063 // chondrocyte development // inferred from electronic annotation /// 0002063 // chondrocyte development // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0006029 // proteoglycan metabolic process // inferred from electronic annotation /// 0006029 // proteoglycan metabolic process // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0030199 // collagen fibril organization // not recorded /// 0030199 // collagen fibril organization // traceable author statement /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048705 // skeletal system morphogenesis // not recorded /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // not recorded /// 0051216 // cartilage development // not recorded /// 0051216 // cartilage development // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen // inferred from electronic annotation /// 0005581 // collagen // not recorded /// 0005592 // collagen type XI // not recorded /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // traceable author statement 1384932_at AI045232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045232 /DB_XREF=gi:3292051 /DB_XREF=UI-R-C1-kh-b-10-0-UI.s1 /CLONE=UI-R-C1-kh-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.20861.1 /TIER=ConsEnd /STK=1 /UG=Rn.20861 /UG_TITLE=ESTs AI045232 PFTAIRE protein kinase 1 Pftk1 362316 NM_001108617 0000086 // G2/M transition of mitotic cell cycle // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0060828 // regulation of canonical Wnt receptor signaling pathway // not recorded 0000308 // cytoplasmic cyclin-dependent protein kinase holoenzyme complex // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0030332 // cyclin binding // not recorded 1384933_at BF545691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545691 /DB_XREF=gi:11636798 /DB_XREF=UI-R-C2p-qp-g-05-0-UI.r1 /CLONE=UI-R-C2p-qp-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.72586.1 /TIER=ConsEnd /STK=1 /UG=Rn.72586 /UG_TITLE=ESTs BF545691 Solute carrier family 18 (vesicular monoamine), member 2 Slc18a2 25549 NM_013031 0001975 // response to amphetamine // inferred from electronic annotation /// 0001975 // response to amphetamine // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0007568 // aging // inferred from direct assay /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0009636 // response to toxin // inferred from electronic annotation /// 0009636 // response to toxin // not recorded /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0015842 // synaptic vesicle amine transport // traceable author statement /// 0015844 // monoamine transport // inferred from direct assay /// 0016265 // death // inferred from electronic annotation /// 0016265 // death // not recorded /// 0030073 // insulin secretion // inferred from direct assay /// 0042593 // glucose homeostasis // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0008021 // synaptic vesicle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031045 // dense core granule // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043679 // axon terminus // inferred from direct assay /// 0044297 // cell body // inferred from direct assay 0005275 // amine transmembrane transporter activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1384934_at AA893454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893454 /DB_XREF=gi:4132294 /DB_XREF=EST197257 /CLONE=RLIAB64 /FEA=EST /CNT=2 /TID=Rn.7329.1 /TIER=ConsEnd /STK=1 /UG=Rn.7329 /UG_TITLE=ESTs AA893454 Solute carrier family 41, member 2 Slc41a2 362861 NM_001108742 1384935_at AI070621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070621 /DB_XREF=gi:3396872 /DB_XREF=UI-R-C2-mv-c-12-0-UI.s1 /CLONE=UI-R-C2-mv-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.19804.1 /TIER=ConsEnd /STK=1 /UG=Rn.19804 /UG_TITLE=ESTs AI070621 1384936_at AI136316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136316 /DB_XREF=gi:3637093 /DB_XREF=UI-R-C2p-oa-f-08-0-UI.s1 /CLONE=UI-R-C2p-oa-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.33581.1 /TIER=ConsEnd /STK=1 /UG=Rn.33581 /UG_TITLE=ESTs AI136316 1384937_at AI715121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715121 /DB_XREF=gi:5032374 /DB_XREF=UI-R-Y0-abl-d-07-0-UI.s1 /CLONE=UI-R-Y0-abl-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.72515.1 /TIER=ConsEnd /STK=1 /UG=Rn.72515 /UG_TITLE=ESTs AI715121 RB-associated KRAB zinc finger Rbak 288489 NM_001191664 /// XM_001072631 /// XM_221920 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1384938_at AI535143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535143 /DB_XREF=gi:4449278 /DB_XREF=UI-R-C3-sp-f-12-0-UI.s1 /CLONE=UI-R-C3-sp-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.63811.1 /TIER=ConsEnd /STK=1 /UG=Rn.63811 /UG_TITLE=ESTs, Moderately similar to B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42: Comparisons Of The High Resolution Structures For Cdc42 Bound To The Active And Catalytically Compromised Forms Of The Cdc42-Gap (H.sapiens) AI535143 Rho GTPase activating protein 1 Arhgap1 311193 NM_001107747 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0043087 // regulation of GTPase activity // not recorded 0001726 // ruffle // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005886 // plasma membrane // not recorded /// 0031252 // cell leading edge // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005100 // Rho GTPase activator activity // not recorded /// 0005515 // protein binding // not recorded /// 0030675 // Rac GTPase activator activity // not recorded 1384939_at BF522954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522954 /DB_XREF=gi:11630921 /DB_XREF=UI-R-C2p-rw-e-09-0-UI.r1 /CLONE=UI-R-C2p-rw-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.76120.1 /TIER=ConsEnd /STK=1 /UG=Rn.76120 /UG_TITLE=ESTs BF522954 interleukin 18 receptor 1 Il18r1 301365 NM_001106905 0007165 // signal transduction // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031224 // intrinsic to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation 1384940_at AI136655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136655 /DB_XREF=gi:3637432 /DB_XREF=UI-R-C2p-ob-g-12-0-UI.s1 /CLONE=UI-R-C2p-ob-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.27199.1 /TIER=ConsEnd /STK=1 /UG=Rn.27199 /UG_TITLE=ESTs AI136655 zinc finger protein 518A Znf518a 309478 NM_001030038 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384941_at AI548100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548100 /DB_XREF=gi:4465588 /DB_XREF=UI-R-C3-sm-c-11-0-UI.s1 /CLONE=UI-R-C3-sm-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.41986.1 /TIER=ConsEnd /STK=1 /UG=Rn.41986 /UG_TITLE=ESTs, Moderately similar to I38228 Shb protein (H.sapiens) AI548100 Src homology 2 domain containing F Shf 362205 XM_001081011 /// XM_342507 0005515 // protein binding // inferred from electronic annotation 1384942_at AA818417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818417 /DB_XREF=gi:4228213 /DB_XREF=UI-R-A0-au-f-06-0-UI.s1 /CLONE=UI-R-A0-au-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.16847.1 /TIER=ConsEnd /STK=1 /UG=Rn.16847 /UG_TITLE=ESTs AA818417 leucine rich repeat and fibronectin type III domain containing 5 Lrfn5 314164 NM_001108024 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1384943_at AI137629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137629 /DB_XREF=gi:3638406 /DB_XREF=UI-R-C0-ht-h-01-0-UI.s1 /CLONE=UI-R-C0-ht-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.27471.1 /TIER=ConsEnd /STK=1 /UG=Rn.27471 /UG_TITLE=ESTs AI137629 similar to DNA segment, Chr 16, ERATO Doi 472, expressed RGD1563888 360692 NM_001108312 1384944_at BE116855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116855 /DB_XREF=gi:8508960 /DB_XREF=UI-R-BS1-azg-a-09-0-UI.s1 /CLONE=UI-R-BS1-azg-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.52748.1 /TIER=ConsEnd /STK=1 /UG=Rn.52748 /UG_TITLE=ESTs BE116855 B-cell CLL/lymphoma 11B (zinc finger protein) Bcl11b 314423 NM_001108057 0007409 // axonogenesis // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009791 // post-embryonic development // not recorded /// 0021953 // central nervous system neuron differentiation // not recorded /// 0031077 // post-embryonic camera-type eye development // not recorded /// 0033153 // T cell receptor V(D)J recombination // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046632 // alpha-beta T cell differentiation // not recorded /// 0048538 // thymus development // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1384945_at AI501447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501447 /DB_XREF=gi:4399298 /DB_XREF=UI-R-C2p-sb-c-03-0-UI.s1 /CLONE=UI-R-C2p-sb-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.35357.1 /TIER=ConsEnd /STK=1 /UG=Rn.35357 /UG_TITLE=ESTs AI501447 forty-two-three domain containing 1 Fyttd1 360726 NM_001047899 0006406 // mRNA export from nucleus // not recorded /// 0006406 // mRNA export from nucleus // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005654 // nucleoplasm // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded /// 0016607 // nuclear speck // inferred from sequence or structural similarity /// 0016607 // nuclear speck // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0003729 // mRNA binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded 1384946_at AI070419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070419 /DB_XREF=gi:3396670 /DB_XREF=UI-R-C2-mq-b-02-0-UI.s1 /CLONE=UI-R-C2-mq-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.19750.1 /TIER=ConsEnd /STK=1 /UG=Rn.19750 /UG_TITLE=ESTs, Moderately similar to T08664 Toll protein-like receptor DKFZp547I0610.1 (H.sapiens) AI070419 toll-like receptor 1 Tlr1 305354 NM_001172120 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031224 // intrinsic to membrane // inferred from electronic annotation 0004888 // transmembrane receptor activity // inferred from electronic annotation 1384947_at BF556486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556486 /DB_XREF=gi:11666216 /DB_XREF=UI-R-E1-fk-d-04-0-UI.r1 /CLONE=UI-R-E1-fk-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.9030.1 /TIER=ConsEnd /STK=1 /UG=Rn.9030 /UG_TITLE=ESTs BF556486 1384948_at AI113157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113157 /DB_XREF=gi:3513106 /DB_XREF=UI-R-C2p-np-b-11-0-UI.s1 /CLONE=UI-R-C2p-np-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.26926.1 /TIER=ConsEnd /STK=1 /UG=Rn.26926 /UG_TITLE=ESTs AI113157 1384949_at BF547133 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547133 /DB_XREF=gi:11638240 /DB_XREF=UI-R-C1-kz-h-10-0-UI.r1 /CLONE=UI-R-C1-kz-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.21177.1 /TIER=ConsEnd /STK=1 /UG=Rn.21177 /UG_TITLE=ESTs BF547133 1384950_at AI060149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060149 /DB_XREF=gi:3333926 /DB_XREF=UI-R-C1-ll-f-04-0-UI.s1 /CLONE=UI-R-C1-ll-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.21189.1 /TIER=ConsEnd /STK=1 /UG=Rn.21189 /UG_TITLE=ESTs, Weakly similar to T48687 hypothetical protein DKFZp761G1923.1 (H.sapiens) AI060149 phosphatidylinositol 4-kinase type 2 beta Pi4k2b 305419 NM_001005883 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004430 // 1-phosphatidylinositol 4-kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1384951_at AW531209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531209 /DB_XREF=gi:7173623 /DB_XREF=UI-R-BT1-akv-h-09-0-UI.s1 /CLONE=UI-R-BT1-akv-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.72840.1 /TIER=ConsEnd /STK=1 /UG=Rn.72840 /UG_TITLE=ESTs AW531209 collagen, type XX, alpha 1 Col20a1 311716 XM_001058131 /// XM_230973 0007155 // cell adhesion // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 1384952_at AI028968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI028968 /DB_XREF=gi:4295308 /DB_XREF=UI-R-C0-io-g-10-0-UI.s1 /CLONE=UI-R-C0-io-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.33254.1 /TIER=ConsEnd /STK=1 /UG=Rn.33254 /UG_TITLE=ESTs AI028968 1384953_at BF547294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547294 /DB_XREF=gi:11638401 /DB_XREF=UI-R-C2p-ra-g-07-0-UI.r1 /CLONE=UI-R-C2p-ra-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.63913.1 /TIER=ConsEnd /STK=1 /UG=Rn.63913 /UG_TITLE=ESTs BF547294 protein tyrosine phosphatase, receptor type, M Ptprm 29616 NM_001168632 0001937 // negative regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0010596 // negative regulation of endothelial cell migration // inferred from electronic annotation /// 0010596 // negative regulation of endothelial cell migration // not recorded /// 0010842 // retina layer formation // inferred from electronic annotation /// 0010842 // retina layer formation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // not recorded /// 0031175 // neuron projection development // inferred from electronic annotation /// 0031175 // neuron projection development // not recorded /// 0031290 // retinal ganglion cell axon guidance // inferred from electronic annotation /// 0031290 // retinal ganglion cell axon guidance // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0045909 // positive regulation of vasodilation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005911 // cell-cell junction // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005001 // transmembrane receptor protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005001 // transmembrane receptor protein tyrosine phosphatase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0045296 // cadherin binding // inferred from electronic annotation /// 0045296 // cadherin binding // not recorded 1384954_at AI548686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548686 /DB_XREF=gi:4466174 /DB_XREF=UI-R-C3-tp-h-02-0-UI.s1 /CLONE=UI-R-C3-tp-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.72525.1 /TIER=ConsEnd /STK=1 /UG=Rn.72525 /UG_TITLE=ESTs, Weakly similar to A42855 N-heparan sulfate sulfotransferase - rat (R.norvegicus) AI548686 heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 /// heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1 Hs3st3a1 /// Hs3st3b1 303218 /// 363618 NM_001172067 /// NM_001191646 /// XM_001078394 /// XM_001078445 /// XM_220557 /// XM_343911 0006477 // protein sulfation // not recorded 0005887 // integral to plasma membrane // not recorded 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0008467 // [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity // not recorded 1384955_at AI069925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI069925 /DB_XREF=gi:3396176 /DB_XREF=UI-R-C1-lo-d-02-0-UI.s1 /CLONE=UI-R-C1-lo-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.19592.1 /TIER=ConsEnd /STK=1 /UG=Rn.19592 /UG_TITLE=ESTs AI069925 1384956_at AI556490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556490 /DB_XREF=gi:4488853 /DB_XREF=UI-R-C2p-rk-e-08-0-UI.s1 /CLONE=UI-R-C2p-rk-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.39067.1 /TIER=ConsEnd /STK=1 /UG=Rn.39067 /UG_TITLE=ESTs AI556490 1384957_at AI059385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059385 /DB_XREF=gi:3333162 /DB_XREF=UI-R-C1-le-b-04-0-UI.s1 /CLONE=UI-R-C1-le-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.21081.1 /TIER=ConsEnd /STK=1 /UG=Rn.21081 /UG_TITLE=ESTs, Weakly similar to T09069 probable cAMP-responsive element-binding transcription factor CREB-RP - mouse (M.musculus) AI059385 activating transcription factor 6 Atf6 304962 NM_001107196 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1384958_at BI279112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279112 /DB_XREF=gi:14926612 /DB_XREF=UI-R-DA0-byj-d-06-0-UI.s1 /CLONE=UI-R-DA0-byj-d-06-0-UI /FEA=EST /CNT=1 /TID=Rn.77908.1 /TIER=ConsEnd /STK=1 /UG=Rn.77908 /UG_TITLE=EST BI279112 Ubiquitin-conjugating enzyme E2, J1 Ube2j1 297961 NM_001106642 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1384959_at BI295935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295935 /DB_XREF=gi:14959878 /DB_XREF=UI-R-DK0-cfc-e-02-0-UI.s1 /CLONE=UI-R-DK0-cfc-e-02-0-UI /FEA=EST /CNT=1 /TID=Rn.79774.1 /TIER=ConsEnd /STK=1 /UG=Rn.79774 /UG_TITLE=EST BI295935 1384960_at BI281250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281250 /DB_XREF=gi:14930793 /DB_XREF=UI-R-DA0-bzh-b-10-0-UI.s1 /CLONE=UI-R-DA0-bzh-b-10-0-UI /FEA=EST /CNT=1 /TID=Rn.78169.1 /TIER=ConsEnd /STK=1 /UG=Rn.78169 /UG_TITLE=EST BI281250 cystic fibrosis transmembrane conductance regulator homolog (human) Cftr 24255 NM_031506 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from mutant phenotype /// 0006833 // water transport // inferred from mutant phenotype /// 0007589 // body fluid secretion // traceable author statement /// 0015701 // bicarbonate transport // inferred from mutant phenotype /// 0015705 // iodide transport // inferred from mutant phenotype /// 0030301 // cholesterol transport // inferred from electronic annotation /// 0030301 // cholesterol transport // not recorded /// 0030321 // transepithelial chloride transport // inferred from mutant phenotype /// 0030324 // lung development // inferred from mutant phenotype /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042311 // vasodilation // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045909 // positive regulation of vasodilation // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from sequence or structural similarity /// 0005769 // early endosome // inferred from electronic annotation /// 0005902 // microvillus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from direct assay /// 0031205 // endoplasmic reticulum Sec complex // inferred from electronic annotation /// 0031205 // endoplasmic reticulum Sec complex // not recorded /// 0034707 // chloride channel complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0005260 // channel-conductance-controlling ATPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0030165 // PDZ domain binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // not recorded /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 1384961_at BI285650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285650 /DB_XREF=gi:14939510 /DB_XREF=UI-R-DD0-bzv-g-02-0-UI.s1 /CLONE=UI-R-DD0-bzv-g-02-0-UI /FEA=EST /CNT=1 /TID=Rn.78594.1 /TIER=ConsEnd /STK=1 /UG=Rn.78594 /UG_TITLE=EST, Weakly similar to T01B7.8.p (Caenorhabditis elegans) (C.elegans) BI285650 1384962_at BI295735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295735 /DB_XREF=gi:14959480 /DB_XREF=UI-R-DK0-cfa-a-04-0-UI.s1 /CLONE=UI-R-DK0-cfa-a-04-0-UI /FEA=EST /CNT=1 /TID=Rn.79748.1 /TIER=ConsEnd /STK=1 /UG=Rn.79748 /UG_TITLE=EST, Highly similar to Ppar binding protein; TRAP 220 (Mus musculus) (M.musculus) BI295735 mediator complex subunit 1 Med1 497991 NM_001134361 0001701 // in utero embryonic development // not recorded /// 0001889 // liver development // not recorded /// 0001892 // embryonic placenta development // not recorded /// 0006260 // DNA replication // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006590 // thyroid hormone generation // not recorded /// 0006702 // androgen biosynthetic process // not recorded /// 0007275 // multicellular organismal development // not recorded /// 0007420 // brain development // not recorded /// 0007507 // heart development // not recorded /// 0007595 // lactation // not recorded /// 0009887 // organ morphogenesis // not recorded /// 0030518 // steroid hormone receptor signaling pathway // not recorded /// 0030521 // androgen receptor signaling pathway // not recorded /// 0033601 // positive regulation of mammary gland epithelial cell proliferation // not recorded /// 0035050 // embryonic heart tube development // not recorded /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0035162 // embryonic hemopoiesis // not recorded /// 0043010 // camera-type eye development // not recorded /// 0045444 // fat cell differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060744 // mammary gland branching involved in thelarche // not recorded /// 0060745 // mammary gland branching involved in pregnancy // not recorded /// 0060750 // epithelial cell proliferation involved in mammary gland duct elongation // not recorded 0005634 // nucleus // not recorded /// 0016592 // mediator complex // inferred from electronic annotation /// 0016592 // mediator complex // not recorded 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003712 // transcription cofactor activity // not recorded /// 0003713 // transcription coactivator activity // not recorded /// 0004872 // receptor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation /// 0016455 // RNA polymerase II transcription mediator activity // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016922 // ligand-dependent nuclear receptor binding // not recorded /// 0030331 // estrogen receptor binding // not recorded /// 0035257 // nuclear hormone receptor binding // not recorded /// 0042809 // vitamin D receptor binding // not recorded /// 0042974 // retinoic acid receptor binding // not recorded /// 0042975 // peroxisome proliferator activated receptor binding // not recorded /// 0046966 // thyroid hormone receptor binding // not recorded 1384963_at BI277632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277632 /DB_XREF=gi:14923693 /DB_XREF=UI-R-CY0-bxt-e-11-0-UI.s1 /CLONE=UI-R-CY0-bxt-e-11-0-UI /FEA=EST /CNT=1 /TID=Rn.77658.1 /TIER=ConsEnd /STK=1 /UG=Rn.77658 /UG_TITLE=EST BI277632 1384964_at BI281911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281911 /DB_XREF=gi:14932133 /DB_XREF=UI-R-CU0s-cbu-a-11-0-UI.s1 /CLONE=UI-R-CU0s-cbu-a-11-0-UI /FEA=EST /CNT=1 /TID=Rn.78241.1 /TIER=ConsEnd /STK=1 /UG=Rn.78241 /UG_TITLE=EST, Moderately similar to S50998 transporter protein (R.norvegicus) BI281911 similar to Solute carrier family 6 (neurotransmitter transporter), member 20 RGD1566368 301083 XM_002727147 /// XM_002729986 0006836 // neurotransmitter transport // inferred from electronic annotation 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation 1384965_at BI281936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281936 /DB_XREF=gi:14932181 /DB_XREF=UI-R-CU0s-cbu-d-07-0-UI.s1 /CLONE=UI-R-CU0s-cbu-d-07-0-UI /FEA=EST /CNT=1 /TID=Rn.78245.1 /TIER=ConsEnd /STK=1 /UG=Rn.78245 /UG_TITLE=EST, Highly similar to T34021 protein kinase SK2 - rat (R.norvegicus) BI281936 STE20-like kinase (yeast) Slk 54308 NM_019349 0006289 // nucleotide-excision repair // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction 1384966_at BF398640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398640 /DB_XREF=gi:11383637 /DB_XREF=UI-R-BS2-ber-b-08-0-UI.s1 /CLONE=UI-R-BS2-ber-b-08-0-UI /FEA=EST /CNT=1 /TID=Rn.59131.1 /TIER=ConsEnd /STK=1 /UG=Rn.59131 /UG_TITLE=EST BF398640 DDB1 and CUL4 associated factor 17 Dcaf17 499807 NM_001177688 /// XM_001060141 /// XM_575147 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0080008 // CUL4 RING ubiquitin ligase complex // not recorded /// 0080008 // CUL4 RING ubiquitin ligase complex // inferred from sequence or structural similarity /// 0080008 // CUL4 RING ubiquitin ligase complex // inferred from electronic annotation 1384967_at BM386930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386930 /DB_XREF=gi:18186983 /DB_XREF=UI-R-CN1-cjh-n-24-0-UI.s1 /CLONE=UI-R-CN1-cjh-n-24-0-UI /FEA=EST /CNT=1 /TID=Rn.81889.1 /TIER=ConsEnd /STK=1 /UG=Rn.81889 /UG_TITLE=EST BM386930 1384968_at BM384145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384145 /DB_XREF=gi:18184198 /DB_XREF=UI-R-DZ0-cks-n-19-0-UI.s1 /CLONE=UI-R-DZ0-cks-n-19-0-UI /FEA=EST /CNT=1 /TID=Rn.81395.1 /TIER=ConsEnd /STK=1 /UG=Rn.81395 /UG_TITLE=EST BM384145 SH3-domain binding protein 2 Sh3bp2 305450 NM_001100684 0005515 // protein binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded 1384969_at BE109107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109107 /DB_XREF=gi:8501212 /DB_XREF=UI-R-BS1-azb-a-10-0-UI.s1 /CLONE=UI-R-BS1-azb-a-10-0-UI /FEA=EST /CNT=1 /TID=Rn.51672.1 /TIER=ConsEnd /STK=1 /UG=Rn.51672 /UG_TITLE=EST BE109107 collagen, type XXIV, alpha 1 Col24a1 499723 XM_002726055 /// XM_575056 0007155 // cell adhesion // inferred from electronic annotation 0005581 // collagen // inferred from electronic annotation 0005201 // extracellular matrix structural constituent // inferred from electronic annotation 1384970_at BM389861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389861 /DB_XREF=gi:18189908 /DB_XREF=UI-R-CN1-cjp-p-17-0-UI.s1 /CLONE=UI-R-CN1-cjp-p-17-0-UI /FEA=EST /CNT=1 /TID=Rn.55053.2 /TIER=ConsEnd /STK=1 /UG=Rn.55053 /UG_TITLE=ESTs BM389861 similar to RIKEN cDNA 5330437I02 gene RGD1304731 291549 NM_001106139 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation 1384971_at BI289108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289108 /DB_XREF=gi:14946338 /DB_XREF=UI-R-DK0-cfe-f-01-0-UI.s1 /CLONE=UI-R-DK0-cfe-f-01-0-UI /FEA=EST /CNT=1 /TID=Rn.19114.2 /TIER=ConsEnd /STK=1 /UG=Rn.19114 /UG_TITLE=ESTs BI289108 DEP domain containing 7 Depdc7 295971 NM_001029916 0023034 // intracellular signaling pathway // inferred from electronic annotation 1384972_at BF399656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399656 /DB_XREF=gi:11384666 /DB_XREF=UI-R-CA0-bhv-g-09-0-UI.s2 /CLONE=UI-R-CA0-bhv-g-09-0-UI /FEA=EST /CNT=1 /TID=Rn.70950.1 /TIER=ConsEnd /STK=1 /UG=Rn.70950 /UG_TITLE=EST, Highly similar to topoisomerase 3 alpha; Top IIIa (Mus musculus) (M.musculus) BF399656 topoisomerase (DNA) III alpha Top3a 303194 XM_001077625 /// XM_002742451 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006265 // DNA topological change // inferred from electronic annotation /// 0006268 // DNA unwinding involved in replication // inferred from electronic annotation 0005694 // chromosome // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003916 // DNA topoisomerase activity // inferred from electronic annotation /// 0003917 // DNA topoisomerase type I activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1384973_at BM390580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390580 /DB_XREF=gi:18190633 /DB_XREF=UI-R-CN1-cjr-k-15-0-UI.s1 /CLONE=UI-R-CN1-cjr-k-15-0-UI /FEA=EST /CNT=1 /TID=Rn.82486.1 /TIER=ConsEnd /STK=1 /UG=Rn.82486 /UG_TITLE=EST BM390580 serine protease inhibitor B3 Serpinb3 304688 NM_001008887 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation 1384974_at BI283852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283852 /DB_XREF=gi:14936003 /DB_XREF=UI-R-CX0s-ccx-e-02-0-UI.s1 /CLONE=UI-R-CX0s-ccx-e-02-0-UI /FEA=EST /CNT=1 /TID=Rn.78425.1 /TIER=ConsEnd /STK=1 /UG=Rn.78425 /UG_TITLE=EST BI283852 similar to Protein C9orf25 homolog LOC691024 691024 NM_001109616 1384975_at BM387447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387447 /DB_XREF=gi:18187500 /DB_XREF=UI-R-CN1-cjj-e-18-0-UI.s1 /CLONE=UI-R-CN1-cjj-e-18-0-UI /FEA=EST /CNT=1 /TID=Rn.81999.1 /TIER=ConsEnd /STK=1 /UG=Rn.81999 /UG_TITLE=EST BM387447 endoplasmic reticulum metallopeptidase 1 Ermp1 373544 NM_184050 0001541 // ovarian follicle development // inferred from mutant phenotype /// 0006508 // proteolysis // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384976_at BM389824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389824 /DB_XREF=gi:18189877 /DB_XREF=UI-R-CN1-cjp-j-23-0-UI.s1 /CLONE=UI-R-CN1-cjp-j-23-0-UI /FEA=EST /CNT=1 /TID=Rn.82322.1 /TIER=ConsEnd /STK=1 /UG=Rn.82322 /UG_TITLE=EST BM389824 transcription factor AP-2, epsilon Tcfap2e 313596 NM_001191764 /// XM_002726596 /// XM_233526 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1384977_at BI295169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295169 /DB_XREF=gi:14958345 /DB_XREF=UI-R-DK0-ceg-f-01-0-UI.s1 /CLONE=UI-R-DK0-ceg-f-01-0-UI /FEA=EST /CNT=1 /TID=Rn.79675.1 /TIER=ConsEnd /STK=1 /UG=Rn.79675 /UG_TITLE=EST, Weakly similar to RNA recognition motif. (aka RRM, RBD, or RNP domain) (Caenorhabditis elegans) (C.elegans) BI295169 similar to Msx2-interacting protein (SPEN homolog) (SMART/HDAC1-associated repressor protein) LOC690911 690911 XM_002729562 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1384978_at BI279260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279260 /DB_XREF=gi:14926903 /DB_XREF=UI-R-DA0-bym-b-12-0-UI.s1 /CLONE=UI-R-DA0-bym-b-12-0-UI /FEA=EST /CNT=1 /TID=Rn.77919.1 /TIER=ConsEnd /STK=1 /UG=Rn.77919 /UG_TITLE=EST, Highly similar to GLANDULAR KALLIKREIN 10 PRECURSOR (R.norvegicus) BI279260 T-kininogenase Klk1c10 292858 NM_001135173 0006508 // proteolysis // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1384979_at BI289437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289437 /DB_XREF=gi:14947007 /DB_XREF=UI-R-DK0-cfh-a-03-0-UI.s1 /CLONE=UI-R-DK0-cfh-a-03-0-UI /FEA=EST /CNT=1 /TID=Rn.79040.1 /TIER=ConsEnd /STK=1 /UG=Rn.79040 /UG_TITLE=EST, Moderately similar to ML1X_MOUSE MELATONIN-RELATED RECEPTOR (H9) (M.musculus) BI289437 G protein-coupled receptor 50 Gpr50 117097 NM_001191915 /// XM_001067242 /// XM_346374 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0008502 // melatonin receptor activity // inferred from electronic annotation 1384980_at BM387361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387361 /DB_XREF=gi:18187414 /DB_XREF=UI-R-CN1-cjj-g-01-0-UI.s1 /CLONE=UI-R-CN1-cjj-g-01-0-UI /FEA=EST /CNT=1 /TID=Rn.81981.1 /TIER=ConsEnd /STK=1 /UG=Rn.81981 /UG_TITLE=EST BM387361 1384981_at BM384254 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384254 /DB_XREF=gi:18184307 /DB_XREF=UI-R-DZ0-cks-g-19-0-UI.s1 /CLONE=UI-R-DZ0-cks-g-19-0-UI /FEA=EST /CNT=1 /TID=Rn.57361.1 /TIER=ConsEnd /STK=1 /UG=Rn.57361 /UG_TITLE=ESTs, Moderately similar to I49100 mscd6 precursor - mouse (M.musculus) BM384254 Cd6 molecule Cd6 25752 NM_175577 0001934 // positive regulation of protein phosphorylation // inferred from direct assay 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0044214 // fully spanning the plasma membrane // inferred from direct assay 0001948 // glycoprotein binding // inferred from physical interaction /// 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from direct assay 1384982_at BF397679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397679 /DB_XREF=gi:11382663 /DB_XREF=UI-R-BS2-bed-d-05-0-UI.s1 /CLONE=UI-R-BS2-bed-d-05-0-UI /FEA=EST /CNT=1 /TID=Rn.70812.1 /TIER=ConsEnd /STK=1 /UG=Rn.70812 /UG_TITLE=EST BF397679 1384983_at BI294693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294693 /DB_XREF=gi:14957396 /DB_XREF=UI-R-DK0-ceb-a-02-0-UI.s1 /CLONE=UI-R-DK0-ceb-a-02-0-UI /FEA=EST /CNT=1 /TID=Rn.79615.1 /TIER=ConsEnd /STK=1 /UG=Rn.79615 /UG_TITLE=EST, Highly similar to T17343 hypothetical protein DKFZp586K0524.1 (H.sapiens) BI294693 zinc finger, DHHC-type containing 5 Zdhhc5 362156 NM_001039338 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1384984_at BE117488 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117488 /DB_XREF=gi:8509593 /DB_XREF=UI-R-BS1-ayo-d-08-0-UI.s1 /CLONE=UI-R-BS1-ayo-d-08-0-UI /FEA=EST /CNT=1 /TID=Rn.75117.1 /TIER=ConsEnd /STK=1 /UG=Rn.75117 /UG_TITLE=EST BE117488 1384985_at BG671979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671979 /DB_XREF=gi:13894078 /DB_XREF=DRNCAD08 /CLONE=DRNCAD08 /FEA=EST /CNT=1 /TID=Rn.74150.1 /TIER=ConsEnd /STK=1 /UG=Rn.74150 /UG_TITLE=EST BG671979 1384986_at BM387490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387490 /DB_XREF=gi:18187543 /DB_XREF=UI-R-CN1-cjj-m-14-0-UI.s1 /CLONE=UI-R-CN1-cjj-m-14-0-UI /FEA=EST /CNT=1 /TID=Rn.42986.2 /TIER=ConsEnd /STK=1 /UG=Rn.42986 /UG_TITLE=ESTs, Weakly similar to T08700 hypothetical protein DKFZp564G013.1 (H.sapiens) BM387490 ankyrin repeat domain 35 Ankrd35 365881 XM_001063190 /// XM_345258 1384987_at BM386877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386877 /DB_XREF=gi:18186930 /DB_XREF=UI-R-CN1-cjh-d-20-0-UI.s1 /CLONE=UI-R-CN1-cjh-d-20-0-UI /FEA=EST /CNT=1 /TID=Rn.81873.1 /TIER=ConsEnd /STK=1 /UG=Rn.81873 /UG_TITLE=EST BM386877 1384988_at BM385403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385403 /DB_XREF=gi:18185456 /DB_XREF=UI-R-CN1-clv-l-17-0-UI.s1 /CLONE=UI-R-CN1-clv-l-17-0-UI /FEA=EST /CNT=1 /TID=Rn.81585.1 /TIER=ConsEnd /STK=1 /UG=Rn.81585 /UG_TITLE=EST BM385403 F-box protein 5 Fbxo5 292263 NM_001106206 0000089 // mitotic metaphase // inferred from electronic annotation /// 0000089 // mitotic metaphase // not recorded /// 0001556 // oocyte maturation // inferred from electronic annotation /// 0001556 // oocyte maturation // not recorded /// 0007057 // spindle assembly involved in female meiosis I // inferred from electronic annotation /// 0007057 // spindle assembly involved in female meiosis I // not recorded /// 0007346 // regulation of mitotic cell cycle // inferred from electronic annotation /// 0007346 // regulation of mitotic cell cycle // not recorded /// 0016050 // vesicle organization // inferred from electronic annotation /// 0016050 // vesicle organization // not recorded /// 0040020 // regulation of meiosis // inferred from electronic annotation /// 0040020 // regulation of meiosis // not recorded /// 0046785 // microtubule polymerization // inferred from electronic annotation /// 0046785 // microtubule polymerization // not recorded /// 0051225 // spindle assembly // inferred from electronic annotation /// 0051225 // spindle assembly // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005819 // spindle // inferred from electronic annotation /// 0005819 // spindle // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1384989_at BE107398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107398 /DB_XREF=gi:8499503 /DB_XREF=UI-R-BS1-ayt-c-05-0-UI.s1 /CLONE=UI-R-BS1-ayt-c-05-0-UI /FEA=EST /CNT=1 /TID=Rn.51170.2 /TIER=ConsEnd /STK=1 /UG=Rn.51170 /UG_TITLE=ESTs BE107398 pleckstrin homology domain containing, family N member 1 Plekhn1 298694 NM_001134523 0005515 // protein binding // not recorded 1384990_at BF393943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393943 /DB_XREF=gi:11378807 /DB_XREF=UI-R-CA0-bgw-h-09-0-UI.s1 /CLONE=UI-R-CA0-bgw-h-09-0-UI /FEA=EST /CNT=1 /TID=Rn.58176.1 /TIER=ConsEnd /STK=1 /UG=Rn.58176 /UG_TITLE=EST BF393943 1384991_a_at AI236142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236142 /DB_XREF=gi:3829648 /DB_XREF=EST232704 /CLONE=ROVDB92 /FEA=EST /CNT=1 /TID=Rn.65969.2 /TIER=ConsEnd /STK=1 /UG=Rn.65969 /UG_TITLE=ESTs AI236142 histone deacetylase 10 Hdac10 362981 NM_001035000 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006476 // protein deacetylation // not recorded /// 0014003 // oligodendrocyte development // inferred from expression pattern /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016575 // histone deacetylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004407 // histone deacetylase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0033558 // protein deacetylase activity // not recorded /// 0042826 // histone deacetylase binding // not recorded 1384992_at AI236142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236142 /DB_XREF=gi:3829648 /DB_XREF=EST232704 /CLONE=ROVDB92 /FEA=EST /CNT=1 /TID=Rn.65969.2 /TIER=ConsEnd /STK=1 /UG=Rn.65969 /UG_TITLE=ESTs AI236142 histone deacetylase 10 Hdac10 362981 NM_001035000 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006476 // protein deacetylation // not recorded /// 0014003 // oligodendrocyte development // inferred from expression pattern /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016575 // histone deacetylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004407 // histone deacetylase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0033558 // protein deacetylase activity // not recorded /// 0042826 // histone deacetylase binding // not recorded 1384993_at BG376804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376804 /DB_XREF=gi:13301276 /DB_XREF=UI-R-CA1-blh-c-05-0-UI.s1 /CLONE=UI-R-CA1-blh-c-05-0-UI /FEA=EST /CNT=1 /TID=Rn.73147.1 /TIER=ConsEnd /STK=1 /UG=Rn.73147 /UG_TITLE=EST BG376804 similar to peptidylglycine alpha-amidating monooxygenase COOH-terminal interactor; peptidylglycine alpha-amidating monooxygenase COOH-terminal interactor protein-1 RGD1309847 308894 XR_009191 /// XR_086134 1384994_at BI302695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302695 /DB_XREF=gi:14978975 /DB_XREF=UI-R-DO0-cix-l-02-0-UI.s1 /CLONE=UI-R-DO0-cix-l-02-0-UI /FEA=EST /CNT=1 /TID=Rn.77401.1 /TIER=ConsEnd /STK=1 /UG=Rn.77401 /UG_TITLE=EST BI302695 1384995_at BM389881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389881 /DB_XREF=gi:18189934 /DB_XREF=UI-R-CN1-cji-f-04-0-UI.s1 /CLONE=UI-R-CN1-cji-f-04-0-UI /FEA=EST /CNT=1 /TID=Rn.82335.1 /TIER=ConsEnd /STK=1 /UG=Rn.82335 /UG_TITLE=EST BM389881 jerky homolog (mouse) Jrk 315073 NM_001104612 0045449 // regulation of transcription // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005840 // ribosome // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded 1384996_at BM390588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390588 /DB_XREF=gi:18190641 /DB_XREF=UI-R-CN1-cjr-m-07-0-UI.s1 /CLONE=UI-R-CN1-cjr-m-07-0-UI /FEA=EST /CNT=1 /TID=Rn.82487.1 /TIER=ConsEnd /STK=1 /UG=Rn.82487 /UG_TITLE=EST BM390588 1384997_at BI289412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289412 /DB_XREF=gi:14946956 /DB_XREF=UI-R-DK0-cfg-f-07-0-UI.s1 /CLONE=UI-R-DK0-cfg-f-07-0-UI /FEA=EST /CNT=1 /TID=Rn.79037.1 /TIER=ConsEnd /STK=1 /UG=Rn.79037 /UG_TITLE=EST BI289412 apoptosis enhancing nuclease Aen 361594 NM_001108487 0006915 // apoptosis // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010212 // response to ionizing radiation // not recorded /// 0010212 // response to ionizing radiation // inferred from sequence or structural similarity /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005654 // nucleoplasm // inferred from sequence or structural similarity /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // not recorded /// 0004527 // exonuclease activity // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation 1384998_at BF399981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399981 /DB_XREF=gi:11384992 /DB_XREF=UI-R-CA1-bia-c-05-0-UI.s1 /CLONE=UI-R-CA1-bia-c-05-0-UI /FEA=EST /CNT=1 /TID=Rn.59506.1 /TIER=ConsEnd /STK=1 /UG=Rn.59506 /UG_TITLE=EST BF399981 1384999_at BI286074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286074 /DB_XREF=gi:14940359 /DB_XREF=UI-R-DD0-bzt-b-09-0-UI.s1 /CLONE=UI-R-DD0-bzt-b-09-0-UI /FEA=EST /CNT=1 /TID=Rn.78634.1 /TIER=ConsEnd /STK=1 /UG=Rn.78634 /UG_TITLE=EST BI286074 late cornified envelope 1D Lce1d 685981 XM_001066061 /// XM_002726006 1385000_at BF399335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399335 /DB_XREF=gi:11384339 /DB_XREF=UI-R-CA1-bjb-e-12-0-UI.s1 /CLONE=UI-R-CA1-bjb-e-12-0-UI /FEA=EST /CNT=1 /TID=Rn.59343.1 /TIER=ConsEnd /STK=1 /UG=Rn.59343 /UG_TITLE=EST BF399335 RGD1565611 RGD1565611 497957 NM_001110155 1385001_at AI179373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179373 /DB_XREF=gi:3730011 /DB_XREF=EST223070 /CLONE=RSPCG31 /FEA=EST /CNT=1 /TID=Rn.34235.1 /TIER=ConsEnd /STK=1 /UG=Rn.34235 /UG_TITLE=ESTs, Weakly similar to DF5L_HUMAN DFN5-like protein FLJ12150 (H.sapiens) AI179373 gasdermin D Gsdmd 315084 NM_001130553 0031668 // cellular response to extracellular stimulus // not recorded 1385002_at AI454867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454867 /DB_XREF=gi:4296728 /DB_XREF=UI-R-C2p-ql-a-06-0-UI.s1 /CLONE=UI-R-C2p-ql-a-06-0-UI /FEA=EST /CNT=1 /TID=Rn.35132.1 /TIER=ConsEnd /STK=1 /UG=Rn.35132 /UG_TITLE=EST AI454867 1385003_at BE099045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099045 /DB_XREF=gi:8490921 /DB_XREF=UI-R-BJ1-atf-g-01-0-UI.s1 /CLONE=UI-R-BJ1-atf-g-01-0-UI /FEA=EST /CNT=1 /TID=Rn.49843.1 /TIER=ConsEnd /STK=1 /UG=Rn.49843 /UG_TITLE=EST BE099045 1385004_at BE107527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107527 /DB_XREF=gi:8499632 /DB_XREF=UI-R-BS1-ayu-g-05-0-UI.s1 /CLONE=UI-R-BS1-ayu-g-05-0-UI /FEA=EST /CNT=1 /TID=Rn.69012.1 /TIER=ConsEnd /STK=1 /UG=Rn.69012 /UG_TITLE=EST BE107527 1385005_at AW530264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530264 /DB_XREF=gi:7172678 /DB_XREF=UI-R-BU0-amu-e-12-0-UI.s1 /CLONE=UI-R-BU0-amu-e-12-0-UI /FEA=EST /CNT=1 /TID=Rn.47416.1 /TIER=ConsEnd /STK=1 /UG=Rn.47416 /UG_TITLE=EST AW530264 1385006_at BF393029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393029 /DB_XREF=gi:11377889 /DB_XREF=UI-R-CA0-bgp-b-04-0-UI.s1 /CLONE=UI-R-CA0-bgp-b-04-0-UI /FEA=EST /CNT=1 /TID=Rn.70454.1 /TIER=ConsEnd /STK=1 /UG=Rn.70454 /UG_TITLE=EST, Moderately similar to ATRX MOUSE TRANSCRIPTIONAL REGULATOR ATRX (M.musculus) BF393029 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation 0000228 // nuclear chromosome // inferred from electronic annotation /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0070087 // chromo shadow domain binding // inferred from electronic annotation 1385007_at BI303672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303672 /DB_XREF=gi:14979952 /DB_XREF=UI-R-DR0-cjb-a-19-0-UI.s1 /CLONE=UI-R-DR0-cjb-a-19-0-UI /FEA=EST /CNT=1 /TID=Rn.77459.1 /TIER=ConsEnd /STK=1 /UG=Rn.77459 /UG_TITLE=EST BI303672 zinc finger, CCHC domain containing 9 Zcchc9 309986 NM_001013156 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385008_at AA925373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925373 /DB_XREF=gi:4236564 /DB_XREF=UI-R-A1-ee-d-08-0-UI.s1 /CLONE=UI-R-A1-ee-d-08-0-UI /FEA=EST /CNT=1 /TID=Rn.15509.1 /TIER=ConsEnd /STK=1 /UG=Rn.15509 /UG_TITLE=EST AA925373 1385009_at BI291860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291860 /DB_XREF=gi:14951803 /DB_XREF=UI-R-DN0-ciu-a-01-0-UI.s1 /CLONE=UI-R-DN0-ciu-a-01-0-UI /FEA=EST /CNT=1 /TID=Rn.51138.2 /TIER=ConsEnd /STK=1 /UG=Rn.51138 /UG_TITLE=ESTs, Weakly similar to T23419 hypothetical protein K07F5.14 - Caenorhabditis elegans (C.elegans) BI291860 nucleolar protein 8 Nol8 361221 NM_001108408 0006260 // DNA replication // not recorded /// 0030307 // positive regulation of cell growth // not recorded 0005730 // nucleolus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1385010_at BI288858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288858 /DB_XREF=gi:14945847 /DB_XREF=UI-R-DK0-cdf-g-01-0-UI.s1 /CLONE=UI-R-DK0-cdf-g-01-0-UI /FEA=EST /CNT=1 /TID=Rn.78954.1 /TIER=ConsEnd /STK=1 /UG=Rn.78954 /UG_TITLE=EST, Moderately similar to KERATIN, TYPE I CYTOSKELETAL 21 (R.norvegicus) BI288858 keratin 33B Krt33b 450227 NM_001008819 0005882 // intermediate filament // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1385011_at BM385181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385181 /DB_XREF=gi:18185234 /DB_XREF=UI-R-CN1-cjm-p-16-0-UI.s2 /CLONE=UI-R-CN1-cjm-p-16-0-UI /FEA=EST /CNT=1 /TID=Rn.81541.1 /TIER=ConsEnd /STK=1 /UG=Rn.81541 /UG_TITLE=EST BM385181 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 Smarca4 171379 NM_134368 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001832 // blastocyst growth // not recorded /// 0001832 // blastocyst growth // inferred from electronic annotation /// 0001835 // blastocyst hatching // not recorded /// 0001835 // blastocyst hatching // inferred from electronic annotation /// 0006337 // nucleosome disassembly // inferred from direct assay /// 0006338 // chromatin remodeling // not recorded /// 0006346 // methylation-dependent chromatin silencing // not recorded /// 0006346 // methylation-dependent chromatin silencing // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007403 // glial cell fate determination // not recorded /// 0007403 // glial cell fate determination // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // not recorded /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0030902 // hindbrain development // not recorded /// 0030902 // hindbrain development // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048730 // epidermis morphogenesis // not recorded /// 0048730 // epidermis morphogenesis // inferred from electronic annotation /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0060347 // heart trabecula formation // not recorded /// 0060347 // heart trabecula formation // inferred from electronic annotation 0000792 // heterochromatin // not recorded /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005719 // nuclear euchromatin // not recorded /// 0005719 // nuclear euchromatin // inferred from electronic annotation /// 0005726 // perichromatin fibrils // not recorded /// 0005726 // perichromatin fibrils // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0016514 // SWI/SNF complex // inferred from direct assay /// 0016514 // SWI/SNF complex // not recorded /// 0070603 // SWI/SNF-type complex // not recorded /// 0071564 // npBAF complex // not recorded /// 0071564 // npBAF complex // inferred from sequence or structural similarity /// 0071564 // npBAF complex // inferred from electronic annotation /// 0071565 // nBAF complex // not recorded /// 0071565 // nBAF complex // inferred from sequence or structural similarity /// 0071565 // nBAF complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0002039 // p53 binding // not recorded /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from sequence or structural similarity /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred by curator /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0047485 // protein N-terminus binding // not recorded /// 0070577 // histone acetyl-lysine binding // not recorded 1385012_at BF389534 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389534 /DB_XREF=gi:11374369 /DB_XREF=UI-R-CJ0-bfc-h-02-0-UI.s1 /CLONE=UI-R-CJ0-bfc-h-02-0-UI /FEA=EST /CNT=1 /TID=Rn.56962.1 /TIER=ConsEnd /STK=1 /UG=Rn.56962 /UG_TITLE=EST BF389534 coiled-coil domain containing 105 Ccdc105 500800 NM_001025774 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 1385013_at AW534197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534197 /DB_XREF=gi:7176611 /DB_XREF=UI-R-C4-alq-d-05-0-UI.s1 /CLONE=UI-R-C4-alq-d-05-0-UI /FEA=EST /CNT=1 /TID=Rn.48289.1 /TIER=ConsEnd /STK=1 /UG=Rn.48289 /UG_TITLE=EST AW534197 wingless-type MMTV integration site family, member 1 Wnt1 24881 NM_001105714 0000578 // embryonic axis specification // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0007223 // Wnt receptor signaling pathway, calcium modulating pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007520 // myoblast fusion // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0009611 // response to wounding // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010592 // positive regulation of lamellipodium assembly // not recorded /// 0010812 // negative regulation of cell-substrate adhesion // not recorded /// 0014902 // myotube differentiation // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0021527 // spinal cord association neuron differentiation // not recorded /// 0021536 // diencephalon development // not recorded /// 0021551 // central nervous system morphogenesis // not recorded /// 0021588 // cerebellum formation // not recorded /// 0021797 // forebrain anterior/posterior pattern formation // not recorded /// 0022004 // midbrain-hindbrain boundary maturation during brain development // not recorded /// 0022037 // metencephalon development // not recorded /// 0022408 // negative regulation of cell-cell adhesion // not recorded /// 0030901 // midbrain development // not recorded /// 0030917 // midbrain-hindbrain boundary development // not recorded /// 0031100 // organ regeneration // inferred from mutant phenotype /// 0033077 // T cell differentiation in thymus // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0042770 // signal transduction in response to DNA damage // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043568 // positive regulation of insulin-like growth factor receptor signaling pathway // not recorded /// 0045599 // negative regulation of fat cell differentiation // not recorded /// 0045747 // positive regulation of Notch signaling pathway // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0048663 // neuron fate commitment // not recorded /// 0048664 // neuron fate determination // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0061054 // dermatome development // not recorded /// 0070365 // hepatocyte differentiation // inferred from mutant phenotype /// 0071375 // cellular response to peptide hormone stimulus // inferred from expression pattern /// 0071425 // hemopoietic stem cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0009986 // cell surface // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded 1385014_at BG377996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377996 /DB_XREF=gi:13302468 /DB_XREF=UI-R-CU0-bvh-f-05-0-UI.s1 /CLONE=UI-R-CU0-bvh-f-05-0-UI /FEA=EST /CNT=1 /TID=Rn.66534.1 /TIER=ConsEnd /STK=1 /UG=Rn.66534 /UG_TITLE=EST BG377996 Nudix (nucleoside diphosphate linked moiety X)-type motif 11 Nudt11 680248 XM_001056321 /// XM_002727533 1385015_at BM390024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390024 /DB_XREF=gi:18190077 /DB_XREF=UI-R-CN1-cjo-o-12-0-UI.s1 /CLONE=UI-R-CN1-cjo-o-12-0-UI /FEA=EST /CNT=1 /TID=Rn.82365.1 /TIER=ConsEnd /STK=1 /UG=Rn.82365 /UG_TITLE=EST BM390024 zinc binding alcohol dehydrogenase, domain containing 2 Zadh2 291403 NM_001106129 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1385016_at AI136882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136882 /DB_XREF=gi:3637659 /DB_XREF=UI-R-C2p-of-f-03-0-UI.s1 /CLONE=UI-R-C2p-of-f-03-0-UI /FEA=EST /CNT=1 /TID=Rn.27256.2 /TIER=ConsEnd /STK=1 /UG=Rn.27256 /UG_TITLE=ESTs AI136882 1385017_at AW533683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533683 /DB_XREF=gi:7176097 /DB_XREF=UI-R-BU0-anj-g-12-0-UI.s1 /CLONE=UI-R-BU0-anj-g-12-0-UI /FEA=EST /CNT=1 /TID=Rn.48163.1 /TIER=ConsEnd /STK=1 /UG=Rn.48163 /UG_TITLE=EST AW533683 Zinc finger protein 770-like LOC100366023 100366023 XM_002726210 1385018_at BM385089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385089 /DB_XREF=gi:18185142 /DB_XREF=UI-R-CN1-cjm-n-21-0-UI.s9 /CLONE=UI-R-CN1-cjm-n-21-0-UI /FEA=EST /CNT=1 /TID=Rn.81518.1 /TIER=ConsEnd /STK=1 /UG=Rn.81518 /UG_TITLE=EST BM385089 desmoglein 1 beta Dsg1b 291755 XM_002725320 /// XM_214616 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0050821 // protein stabilization // not recorded /// 0060135 // maternal process involved in female pregnancy // inferred from expression pattern 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // not recorded /// 0009898 // internal side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016328 // lateral plasma membrane // inferred from direct assay /// 0030057 // desmosome // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0045295 // gamma-catenin binding // not recorded 1385019_at BM386036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386036 /DB_XREF=gi:18186089 /DB_XREF=UI-R-DN1-ckf-p-19-0-UI.s1 /CLONE=UI-R-DN1-ckf-p-19-0-UI /FEA=EST /CNT=1 /TID=Rn.33991.2 /TIER=ConsEnd /STK=1 /UG=Rn.33991 /UG_TITLE=ESTs BM386036 B-cell scaffold protein with ankyrin repeats 1 Bank1 365948 NM_001047918 /// XM_001077928 /// XM_345295 1385020_at BM387790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387790 /DB_XREF=gi:18187843 /DB_XREF=UI-R-CN1-cjk-g-24-0-UI.s1 /CLONE=UI-R-CN1-cjk-g-24-0-UI /FEA=EST /CNT=1 /TID=Rn.82080.1 /TIER=ConsEnd /STK=1 /UG=Rn.82080 /UG_TITLE=EST BM387790 hypothetical protein LOC499339 LOC499339 499339 NM_001025036 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1385021_at BE110928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110928 /DB_XREF=gi:8503033 /DB_XREF=UI-R-BJ1-aux-e-10-0-UI.s1 /CLONE=UI-R-BJ1-aux-e-10-0-UI /FEA=EST /CNT=1 /TID=Rn.50149.2 /TIER=ConsEnd /STK=1 /UG=Rn.50149 /UG_TITLE=ESTs BE110928 1385022_at BE120566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120566 /DB_XREF=gi:8512671 /DB_XREF=UI-R-CA0-bav-a-03-0-UI.s1 /CLONE=UI-R-CA0-bav-a-03-0-UI /FEA=EST /CNT=1 /TID=Rn.53601.1 /TIER=ConsEnd /STK=1 /UG=Rn.53601 /UG_TITLE=EST, Weakly similar to diacylglycerol kinase (Rattus norvegicus) (R.norvegicus) BE120566 similar to diacylglycerol kinase, delta 130kDa isoform 1 RGD1563309 368088 XM_001065445 /// XM_347258 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0004143 // diacylglycerol kinase activity // inferred from electronic annotation 1385023_at AI144787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144787 /DB_XREF=gi:3666586 /DB_XREF=UI-R-BT0-pr-f-05-0-UI.s1 /CLONE=UI-R-BT0-pr-f-05-0-UI /FEA=EST /CNT=1 /TID=Rn.27682.1 /TIER=ConsEnd /STK=1 /UG=Rn.27682 /UG_TITLE=EST AI144787 RAS protein-specific guanine nucleotide-releasing factor 1 Rasgrf1 192213 NM_001105753 /// NM_001170531 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from sequence or structural similarity /// 0031175 // neuron projection development // inferred from electronic annotation /// 0032320 // positive regulation of Ras GTPase activity // inferred from sequence or structural similarity /// 0032320 // positive regulation of Ras GTPase activity // inferred from electronic annotation /// 0032863 // activation of Rac GTPase activity // inferred from sequence or structural similarity /// 0032863 // activation of Rac GTPase activity // inferred from electronic annotation /// 0035020 // regulation of Rac protein signal transduction // inferred from sequence or structural similarity /// 0035020 // regulation of Rac protein signal transduction // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0046578 // regulation of Ras protein signal transduction // inferred from sequence or structural similarity /// 0046578 // regulation of Ras protein signal transduction // inferred from electronic annotation /// 0048168 // regulation of neuronal synaptic plasticity // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0030426 // growth cone // inferred from sequence or structural similarity /// 0030426 // growth cone // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005099 // Ras GTPase activator activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0035254 // glutamate receptor binding // inferred from electronic annotation 1385024_at AW535558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535558 /DB_XREF=gi:7177972 /DB_XREF=UI-R-C4-alx-h-12-0-UI.s1 /CLONE=UI-R-C4-alx-h-12-0-UI /FEA=EST /CNT=1 /TID=Rn.48517.1 /TIER=ConsEnd /STK=1 /UG=Rn.48517 /UG_TITLE=EST AW535558 cutC copper transporter homolog (E.coli) Cutc 361760 NM_001108525 0055070 // copper ion homeostasis // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005507 // copper ion binding // inferred from electronic annotation 1385025_a_at AI235734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235734 /DB_XREF=gi:4136123 /DB_XREF=EST232296 /CLONE=ROVCW42 /FEA=EST /CNT=1 /TID=Rn.48643.2 /TIER=ConsEnd /STK=1 /UG=Rn.48643 /UG_TITLE=ESTs AI235734 G protein-coupled receptor 137B Gpr137b 289287 NM_001105978 1385026_at AW524742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524742 /DB_XREF=gi:7167127 /DB_XREF=UI-R-BO0-aib-g-12-0-UI.s1 /CLONE=UI-R-BO0-aib-g-12-0-UI /FEA=EST /CNT=1 /TID=Rn.45916.1 /TIER=ConsEnd /STK=1 /UG=Rn.45916 /UG_TITLE=EST AW524742 1385027_at BG380549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380549 /DB_XREF=gi:13305021 /DB_XREF=UI-R-CT0-bty-f-05-0-UI.s1 /CLONE=UI-R-CT0-bty-f-05-0-UI /FEA=EST /CNT=1 /TID=Rn.73356.1 /TIER=ConsEnd /STK=1 /UG=Rn.73356 /UG_TITLE=EST BG380549 1385028_at BE107383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107383 /DB_XREF=gi:8499488 /DB_XREF=UI-R-BS1-ayt-a-12-0-UI.s1 /CLONE=UI-R-BS1-ayt-a-12-0-UI /FEA=EST /CNT=1 /TID=Rn.51167.1 /TIER=ConsEnd /STK=1 /UG=Rn.51167 /UG_TITLE=EST BE107383 1385029_at BE110921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110921 /DB_XREF=gi:8503026 /DB_XREF=UI-R-BJ1-aux-e-03-0-UI.s1 /CLONE=UI-R-BJ1-aux-e-03-0-UI /FEA=EST /CNT=1 /TID=Rn.51942.1 /TIER=ConsEnd /STK=1 /UG=Rn.51942 /UG_TITLE=EST BE110921 1385030_at BE097270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097270 /DB_XREF=gi:8488201 /DB_XREF=UI-R-BO1-apv-d-01-0-UI.s1 /CLONE=UI-R-BO1-apv-d-01-0-UI /FEA=EST /CNT=1 /TID=Rn.49577.1 /TIER=ConsEnd /STK=1 /UG=Rn.49577 /UG_TITLE=EST BE097270 1385031_at AI144913 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144913 /DB_XREF=gi:3666712 /DB_XREF=UI-R-BT0-pp-d-04-0-UI.s1 /CLONE=UI-R-BT0-pp-d-04-0-UI /FEA=EST /CNT=1 /TID=Rn.27732.1 /TIER=ConsEnd /STK=1 /UG=Rn.27732 /UG_TITLE=EST AI144913 1385032_at BE114028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114028 /DB_XREF=gi:8506133 /DB_XREF=UI-R-CA0-axn-c-02-0-UI.s1 /CLONE=UI-R-CA0-axn-c-02-0-UI /FEA=EST /CNT=1 /TID=Rn.52288.1 /TIER=ConsEnd /STK=1 /UG=Rn.52288 /UG_TITLE=EST BE114028 1385033_at AI548918 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548918 /DB_XREF=gi:4466406 /DB_XREF=UI-R-C3-tp-g-09-0-UI.s1 /CLONE=UI-R-C3-tp-g-09-0-UI /FEA=EST /CNT=1 /TID=Rn.42004.1 /TIER=ConsEnd /STK=1 /UG=Rn.42004 /UG_TITLE=EST AI548918 1385034_at AW527447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527447 /DB_XREF=gi:7169861 /DB_XREF=UI-R-BO1-ajt-d-11-0-UI.s1 /CLONE=UI-R-BO1-ajt-d-11-0-UI /FEA=EST /CNT=1 /TID=Rn.46532.1 /TIER=ConsEnd /STK=1 /UG=Rn.46532 /UG_TITLE=ESTs AW527447 LIM homeobox 9 Lhx9 289048 NM_181367 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0008584 // male gonad development // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0008585 // female gonad development // inferred from electronic annotation /// 0008585 // female gonad development // not recorded /// 0035262 // gonad morphogenesis // inferred from electronic annotation /// 0035262 // gonad morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385035_at AI639241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639241 /DB_XREF=gi:4700275 /DB_XREF=rz00751s /CLONE=rz00751 /FEA=EST /CNT=1 /TID=Rn.43693.1 /TIER=ConsEnd /STK=1 /UG=Rn.43693 /UG_TITLE=EST, Weakly similar to I58376 hypothetical protein unp - mouse (M.musculus) AI639241 ubiquitin specific peptidase 12 Usp12 360763 NM_001166576 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0016579 // protein deubiquitination // not recorded 0004197 // cysteine-type endopeptidase activity // not recorded /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1385036_at BE117744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117744 /DB_XREF=gi:8509849 /DB_XREF=UI-R-BS1-azf-e-02-0-UI.s1 /CLONE=UI-R-BS1-azf-e-02-0-UI /FEA=EST /CNT=1 /TID=Rn.52885.1 /TIER=ConsEnd /STK=1 /UG=Rn.52885 /UG_TITLE=EST BE117744 synuclein, alpha interacting protein Sncaip 307309 NM_001107379 0042417 // dopamine metabolic process // not recorded /// 0046928 // regulation of neurotransmitter secretion // not recorded /// 0090083 // regulation of inclusion body assembly // not recorded 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded 1385037_at BF409340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409340 /DB_XREF=gi:11397315 /DB_XREF=UI-R-CA1-ble-h-07-0-UI.s1 /CLONE=UI-R-CA1-ble-h-07-0-UI /FEA=EST /CNT=1 /TID=Rn.71560.1 /TIER=ConsEnd /STK=1 /UG=Rn.71560 /UG_TITLE=EST, Moderately similar to T00081 hypothetical protein KIAA0518 (H.sapiens) BF409340 MAX gene associated Mga 499874 XM_002726215 /// XM_575215 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0071339 // MLL1 complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1385038_at BF390009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390009 /DB_XREF=gi:11374851 /DB_XREF=UI-R-BS2-bdr-c-04-0-UI.s1 /CLONE=UI-R-BS2-bdr-c-04-0-UI /FEA=EST /CNT=1 /TID=Rn.65234.1 /TIER=ConsEnd /STK=1 /UG=Rn.65234 /UG_TITLE=EST BF390009 Hedgehog-interacting protein Hhip 291936 NM_001191817 /// XM_238042 0007165 // signal transduction // not recorded /// 0007224 // smoothened signaling pathway // not recorded /// 0007405 // neuroblast proliferation // not recorded /// 0009887 // organ morphogenesis // not recorded /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0009968 // negative regulation of signal transduction // not recorded /// 0030324 // lung development // not recorded /// 0040036 // regulation of fibroblast growth factor receptor signaling pathway // not recorded /// 0045879 // negative regulation of smoothened signaling pathway // not recorded 0005887 // integral to plasma membrane // not recorded /// 0009986 // cell surface // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // not recorded 1385039_at BF410877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410877 /DB_XREF=gi:11398852 /DB_XREF=UI-R-CN0-bmf-b-03-0-UI.s1 /CLONE=UI-R-CN0-bmf-b-03-0-UI /FEA=EST /CNT=1 /TID=Rn.61788.1 /TIER=ConsEnd /STK=1 /UG=Rn.61788 /UG_TITLE=EST BF410877 1385040_at BE120593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120593 /DB_XREF=gi:8512698 /DB_XREF=UI-R-CA0-bav-d-01-0-UI.s1 /CLONE=UI-R-CA0-bav-d-01-0-UI /FEA=EST /CNT=1 /TID=Rn.53606.1 /TIER=ConsEnd /STK=1 /UG=Rn.53606 /UG_TITLE=EST, Weakly similar to FBX2_HUMAN F-BOX ONLY PROTEIN 2 (H.sapiens) BE120593 F-box protein 17 Fbxo17 292757 NM_001013064 0030163 // protein catabolic process // inferred from electronic annotation 0019005 // SCF ubiquitin ligase complex // not recorded /// 0019005 // SCF ubiquitin ligase complex // inferred from sequence or structural similarity 0001948 // glycoprotein binding // not recorded /// 0001948 // glycoprotein binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1385041_at BF409626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409626 /DB_XREF=gi:11397601 /DB_XREF=UI-R-CA1-blm-f-09-0-UI.s1 /CLONE=UI-R-CA1-blm-f-09-0-UI /FEA=EST /CNT=1 /TID=Rn.75888.1 /TIER=ConsEnd /STK=1 /UG=Rn.75888 /UG_TITLE=EST BF409626 sortilin-related VPS10 domain containing receptor 3 Sorcs3 294043 NM_001106367 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1385042_at BM387871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387871 /DB_XREF=gi:18187924 /DB_XREF=UI-R-CN1-cjk-h-17-0-UI.s1 /CLONE=UI-R-CN1-cjk-h-17-0-UI /FEA=EST /CNT=1 /TID=Rn.82107.1 /TIER=ConsEnd /STK=1 /UG=Rn.82107 /UG_TITLE=EST BM387871 suppressor of fused homolog (Drosophila) Sufu 361769 NM_001024899 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001843 // neural tube closure // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0001947 // heart looping // inferred from electronic annotation /// 0001947 // heart looping // not recorded /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0021513 // spinal cord dorsal/ventral patterning // inferred from electronic annotation /// 0021513 // spinal cord dorsal/ventral patterning // not recorded /// 0042994 // cytoplasmic sequestering of transcription factor // inferred from electronic annotation /// 0042994 // cytoplasmic sequestering of transcription factor // not recorded /// 0043588 // skin development // inferred from electronic annotation /// 0043588 // skin development // not recorded /// 0045879 // negative regulation of smoothened signaling pathway // inferred from electronic annotation /// 0045879 // negative regulation of smoothened signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005929 // cilium // inferred from electronic annotation /// 0005929 // cilium // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0016566 // specific transcriptional repressor activity // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1385043_at AA924649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924649 /DB_XREF=gi:4235840 /DB_XREF=UI-R-A1-dz-c-05-0-UI.s1 /CLONE=UI-R-A1-dz-c-05-0-UI /FEA=EST /CNT=1 /TID=Rn.32617.2 /TIER=ConsEnd /STK=1 /UG=Rn.32617 /UG_TITLE=ESTs AA924649 1385044_at BE107277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107277 /DB_XREF=gi:8499382 /DB_XREF=UI-R-BS1-ayr-h-10-0-UI.s1 /CLONE=UI-R-BS1-ayr-h-10-0-UI /FEA=EST /CNT=1 /TID=Rn.51147.1 /TIER=ConsEnd /STK=1 /UG=Rn.51147 /UG_TITLE=EST BE107277 cysteine-serine-rich nuclear protein 3 Csrnp3 311093 XM_001056212 /// XM_229993 0043065 // positive regulation of apoptosis // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // not recorded 1385045_at BI301747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301747 /DB_XREF=gi:14978027 /DB_XREF=UI-R-DL0-cin-l-03-0-UI.s1 /CLONE=UI-R-DL0-cin-l-03-0-UI /FEA=EST /CNT=1 /TID=Rn.77074.1 /TIER=ConsEnd /STK=1 /UG=Rn.77074 /UG_TITLE=EST, Weakly similar to W09C5.1.p (Caenorhabditis elegans) (C.elegans) BI301747 similar to TGF beta-inducible nuclear protein 1 LOC680928 680928 XR_085813 /// XR_086226 1385046_at BM387916 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387916 /DB_XREF=gi:18187969 /DB_XREF=UI-R-CN1-cjk-b-12-0-UI.s1 /CLONE=UI-R-CN1-cjk-b-12-0-UI /FEA=EST /CNT=1 /TID=Rn.82113.1 /TIER=ConsEnd /STK=1 /UG=Rn.82113 /UG_TITLE=EST BM387916 family with sequence similarity 55, member C Fam55c 681096 NM_001109435 1385047_x_at AI012782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012782 /DB_XREF=gi:3226614 /DB_XREF=EST207233 /CLONE=RPLBB56 /FEA=EST /CNT=1 /TID=Rn.3456.2 /TIER=ConsEnd /STK=1 /UG=Rn.3456 /UG_TITLE=ESTs AI012782 similar to paired immunoglobin-like type 2 receptor beta /// similar to cell surface receptor FDFACT LOC685111 /// RGD1559588 304349 /// 685111 XM_001062357 /// XM_001075881 /// XM_221990 1385048_at BF398257 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398257 /DB_XREF=gi:11383246 /DB_XREF=UI-R-BS2-bfb-d-06-0-UI.s1 /CLONE=UI-R-BS2-bfb-d-06-0-UI /FEA=EST /CNT=1 /TID=Rn.59022.1 /TIER=ConsEnd /STK=1 /UG=Rn.59022 /UG_TITLE=EST BF398257 1385049_at BE116124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116124 /DB_XREF=gi:8508229 /DB_XREF=UI-R-BS1-axz-f-12-0-UI.s1 /CLONE=UI-R-BS1-axz-f-12-0-UI /FEA=EST /CNT=1 /TID=Rn.52624.1 /TIER=ConsEnd /STK=1 /UG=Rn.52624 /UG_TITLE=EST BE116124 1385050_at BF397804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397804 /DB_XREF=gi:11382788 /DB_XREF=UI-R-BS2-bee-g-12-0-UI.s1 /CLONE=UI-R-BS2-bee-g-12-0-UI /FEA=EST /CNT=1 /TID=Rn.75638.1 /TIER=ConsEnd /STK=1 /UG=Rn.75638 /UG_TITLE=EST BF397804 zinc finger protein 292 Znf292 50552 NM_001008879 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008134 // transcription factor binding // non-traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay 1385051_at BE108569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108569 /DB_XREF=gi:8500674 /DB_XREF=UI-R-CA0-axf-g-08-0-UI.s1 /CLONE=UI-R-CA0-axf-g-08-0-UI /FEA=EST /CNT=1 /TID=Rn.51530.1 /TIER=ConsEnd /STK=1 /UG=Rn.51530 /UG_TITLE=EST BE108569 guanylate binding protein 4 Gbp4 310917 XM_001078892 /// XM_227762 0005829 // cytosol // not recorded 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1385052_at BM389915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389915 /DB_XREF=gi:18189968 /DB_XREF=UI-R-CN1-cji-l-04-0-UI.s1 /CLONE=UI-R-CN1-cji-l-04-0-UI /FEA=EST /CNT=1 /TID=Rn.82343.1 /TIER=ConsEnd /STK=1 /UG=Rn.82343 /UG_TITLE=EST BM389915 1385053_at BE108648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108648 /DB_XREF=gi:8500753 /DB_XREF=UI-R-CA0-axg-g-06-0-UI.s1 /CLONE=UI-R-CA0-axg-g-06-0-UI /FEA=EST /CNT=1 /TID=Rn.51563.1 /TIER=ConsEnd /STK=1 /UG=Rn.51563 /UG_TITLE=EST BE108648 1385054_at BE104042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104042 /DB_XREF=gi:8496142 /DB_XREF=UI-R-BX0-ark-a-11-0-UI.s1 /CLONE=UI-R-BX0-ark-a-11-0-UI /FEA=EST /CNT=1 /TID=Rn.50599.1 /TIER=ConsEnd /STK=1 /UG=Rn.50599 /UG_TITLE=EST BE104042 rCG54510-like LOC100364295 100364295 XM_002725570 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1385055_at BF399530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399530 /DB_XREF=gi:11384538 /DB_XREF=UI-R-CA1-bjb-j-18-0-UI.s1 /CLONE=UI-R-CA1-bjb-j-18-0-UI /FEA=EST /CNT=1 /TID=Rn.59400.1 /TIER=ConsEnd /STK=1 /UG=Rn.59400 /UG_TITLE=EST, Moderately similar to XAP5_HUMAN XAP-5 protein (HXC-26 protein) (H.sapiens) BF399530 similar to D0H6S2654E protein RGD1563458 306883 NM_001107349 0005634 // nucleus // inferred from electronic annotation 1385056_at BG372572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372572 /DB_XREF=gi:13269109 /DB_XREF=UI-R-CV1-brv-g-03-0-UI.s1 /CLONE=UI-R-CV1-brv-g-03-0-UI /FEA=EST /CNT=1 /TID=Rn.66935.1 /TIER=ConsEnd /STK=1 /UG=Rn.66935 /UG_TITLE=EST, Moderately similar to MSH5_HUMAN MUTS PROTEIN HOMOLOG 5 (H.sapiens) BG372572 mutS homolog 5 (E. coli) Msh5 294252 NM_212536 0006298 // mismatch repair // inferred from electronic annotation /// 0007126 // meiosis // inferred from electronic annotation /// 0007127 // meiosis I // not recorded /// 0007127 // meiosis I // inferred from electronic annotation /// 0007129 // synapsis // inferred from electronic annotation /// 0007129 // synapsis // not recorded /// 0007292 // female gamete generation // inferred from electronic annotation /// 0007292 // female gamete generation // not recorded 0000795 // synaptonemal complex // inferred from electronic annotation /// 0000795 // synaptonemal complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0030983 // mismatched DNA binding // inferred from electronic annotation 1385057_at AA819868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819868 /DB_XREF=gi:4228121 /DB_XREF=UI-R-A0-aq-a-02-0-UI.s1 /CLONE=UI-R-A0-aq-a-02-0-UI /FEA=EST /CNT=1 /TID=Rn.16684.1 /TIER=ConsEnd /STK=1 /UG=Rn.16684 /UG_TITLE=EST AA819868 1385058_at BI292090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292090 /DB_XREF=gi:14952252 /DB_XREF=UI-R-DN0-ciu-d-02-0-UI.s1 /CLONE=UI-R-DN0-ciu-d-02-0-UI /FEA=EST /CNT=1 /TID=Rn.79297.1 /TIER=ConsEnd /STK=1 /UG=Rn.79297 /UG_TITLE=EST BI292090 claudin 8 Cldn8 304124 NM_001037774 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005923 // tight junction // inferred from electronic annotation /// 0005923 // tight junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1385059_at AI136696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136696 /DB_XREF=gi:3637473 /DB_XREF=UI-R-C2p-nq-g-07-0-UI.s1 /CLONE=UI-R-C2p-nq-g-07-0-UI /FEA=EST /CNT=1 /TID=Rn.27213.1 /TIER=ConsEnd /STK=1 /UG=Rn.27213 /UG_TITLE=EST AI136696 zinc finger protein 655 Znf655 360764 NM_001008362 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007346 // regulation of mitotic cell cycle // not recorded /// 0007346 // regulation of mitotic cell cycle // inferred from sequence or structural similarity /// 0051318 // G1 phase // not recorded /// 0051318 // G1 phase // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1385060_at BF401036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401036 /DB_XREF=gi:11389011 /DB_XREF=UI-R-CA0-bgi-h-03-0-UI.s1 /CLONE=UI-R-CA0-bgi-h-03-0-UI /FEA=EST /CNT=1 /TID=Rn.59702.1 /TIER=ConsEnd /STK=1 /UG=Rn.59702 /UG_TITLE=EST BF401036 similar to RIKEN cDNA 1110012D08 RGD1562342 500762 NM_001109281 1385061_at AI145445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145445 /DB_XREF=gi:3667244 /DB_XREF=UI-R-BT0-pv-d-07-0-UI.s1 /CLONE=UI-R-BT0-pv-d-07-0-UI /FEA=EST /CNT=1 /TID=Rn.28477.1 /TIER=ConsEnd /STK=1 /UG=Rn.28477 /UG_TITLE=EST AI145445 transmembrane protein 229A Tmem229a 685756 NM_001109480 1385062_at BG379388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379388 /DB_XREF=gi:13303855 /DB_XREF=UI-R-CS0-btg-c-03-0-UI.s1 /CLONE=UI-R-CS0-btg-c-03-0-UI /FEA=EST /CNT=1 /TID=Rn.66670.1 /TIER=ConsEnd /STK=1 /UG=Rn.66670 /UG_TITLE=EST BG379388 hypothetical LOC304654 RGD1306072 304654 XM_001072092 /// XM_222458 0005515 // protein binding // not recorded 1385063_at BG377323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377323 /DB_XREF=gi:13301795 /DB_XREF=UI-R-CU0-bvc-b-03-0-UI.s1 /CLONE=UI-R-CU0-bvc-b-03-0-UI /FEA=EST /CNT=1 /TID=Rn.76433.1 /TIER=ConsEnd /STK=1 /UG=Rn.76433 /UG_TITLE=EST BG377323 1385064_at BM384729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384729 /DB_XREF=gi:18184787 /DB_XREF=UI-R-CN1-cjl-j-05-0-UI.s2 /CLONE=UI-R-CN1-cjl-j-05-0-UI /FEA=EST /CNT=1 /TID=Rn.81472.1 /TIER=ConsEnd /STK=1 /UG=Rn.81472 /UG_TITLE=EST BM384729 L-amino acid oxidase 1 Lao1 298483 NM_001106682 0009063 // cellular amino acid catabolic process // inferred from electronic annotation /// 0009063 // cellular amino acid catabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded 0001716 // L-amino-acid oxidase activity // inferred from electronic annotation /// 0001716 // L-amino-acid oxidase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1385065_at AA891903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891903 /DB_XREF=gi:3018782 /DB_XREF=EST195706 /CLONE=RKIAI35 /FEA=EST /CNT=1 /TID=Rn.14719.1 /TIER=ConsEnd /STK=1 /UG=Rn.14719 /UG_TITLE=EST AA891903 1385066_a_at BM390527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390527 /DB_XREF=gi:18190580 /DB_XREF=UI-R-CN1-cjr-a-19-0-UI.s1 /CLONE=UI-R-CN1-cjr-a-19-0-UI /FEA=EST /CNT=1 /TID=Rn.23801.2 /TIER=ConsEnd /STK=1 /UG=Rn.23801 /UG_TITLE=ESTs BM390527 1385067_at BE117752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117752 /DB_XREF=gi:8509857 /DB_XREF=UI-R-BS1-azf-e-10-0-UI.s1 /CLONE=UI-R-BS1-azf-e-10-0-UI /FEA=EST /CNT=1 /TID=Rn.52886.1 /TIER=ConsEnd /STK=1 /UG=Rn.52886 /UG_TITLE=EST, Moderately similar to S16788 probable reverse transcriptase - rat (R.norvegicus) BE117752 1385068_at BF397283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397283 /DB_XREF=gi:11382266 /DB_XREF=UI-R-BS2-bek-e-09-0-UI.s1 /CLONE=UI-R-BS2-bek-e-09-0-UI /FEA=EST /CNT=1 /TID=Rn.58790.1 /TIER=ConsEnd /STK=1 /UG=Rn.58790 /UG_TITLE=EST BF397283 1385069_at BM389711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389711 /DB_XREF=gi:18189764 /DB_XREF=UI-R-CN1-cjp-g-02-0-UI.s1 /CLONE=UI-R-CN1-cjp-g-02-0-UI /FEA=EST /CNT=1 /TID=Rn.82301.1 /TIER=ConsEnd /STK=1 /UG=Rn.82301 /UG_TITLE=EST BM389711 activin A receptor, type I Acvr1 79558 NM_024486 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001655 // urogenital system development // inferred from mutant phenotype /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // not recorded /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0001707 // mesoderm formation // not recorded /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0002526 // acute inflammatory response // inferred from electronic annotation /// 0002526 // acute inflammatory response // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // traceable author statement /// 0007165 // signal transduction // not recorded /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007281 // germ cell development // inferred from electronic annotation /// 0007281 // germ cell development // not recorded /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // not recorded /// 0007369 // gastrulation // not recorded /// 0007369 // gastrulation // inferred from electronic annotation /// 0007498 // mesoderm development // inferred from electronic annotation /// 0007498 // mesoderm development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0009968 // negative regulation of signal transduction // not recorded /// 0016310 // phosphorylation // not recorded /// 0030278 // regulation of ossification // inferred from electronic annotation /// 0030278 // regulation of ossification // not recorded /// 0030501 // positive regulation of bone mineralization // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // not recorded /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030509 // BMP signaling pathway // not recorded /// 0032926 // negative regulation of activin receptor signaling pathway // inferred from electronic annotation /// 0032926 // negative regulation of activin receptor signaling pathway // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0048641 // regulation of skeletal muscle tissue development // inferred from expression pattern /// 0051145 // smooth muscle cell differentiation // inferred from electronic annotation /// 0051145 // smooth muscle cell differentiation // not recorded /// 0060037 // pharyngeal system development // inferred from electronic annotation /// 0060037 // pharyngeal system development // not recorded /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded /// 0048179 // activin receptor complex // inferred from direct assay /// 0048179 // activin receptor complex // inferred from mutant phenotype /// 0048179 // activin receptor complex // not recorded /// 0048179 // activin receptor complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // traceable author statement /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // inferred from electronic annotation /// 0004702 // receptor signaling protein serine/threonine kinase activity // inferred from mutant phenotype /// 0004702 // receptor signaling protein serine/threonine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta receptor activity // inferred from electronic annotation /// 0005025 // transforming growth factor beta receptor activity, type I // not recorded /// 0005025 // transforming growth factor beta receptor activity, type I // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016361 // activin receptor activity, type I // inferred from direct assay /// 0016361 // activin receptor activity, type I // inferred from mutant phenotype /// 0016361 // activin receptor activity, type I // not recorded /// 0016361 // activin receptor activity, type I // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded /// 0019838 // growth factor binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046332 // SMAD binding // inferred from mutant phenotype /// 0046332 // SMAD binding // not recorded /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048185 // activin binding // inferred from electronic annotation /// 0048185 // activin binding // not recorded /// 0050431 // transforming growth factor beta binding // inferred from electronic annotation /// 0050431 // transforming growth factor beta binding // not recorded 1385070_at BE111420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111420 /DB_XREF=gi:8503525 /DB_XREF=UI-R-BJ1-auy-f-04-0-UI.s1 /CLONE=UI-R-BJ1-auy-f-04-0-UI /FEA=EST /CNT=1 /TID=Rn.51993.1 /TIER=ConsEnd /STK=1 /UG=Rn.51993 /UG_TITLE=EST BE111420 1385071_at AI070366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070366 /DB_XREF=gi:3396617 /DB_XREF=UI-R-Y0-lt-a-10-0-UI.s1 /CLONE=UI-R-Y0-lt-a-10-0-UI /FEA=EST /CNT=1 /TID=Rn.19735.1 /TIER=ConsEnd /STK=1 /UG=Rn.19735 /UG_TITLE=EST AI070366 0006508 // proteolysis // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1385072_at AA997048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997048 /DB_XREF=gi:4280811 /DB_XREF=UI-R-C0-hk-c-03-0-UI.s1 /CLONE=UI-R-C0-hk-c-03-0-UI /FEA=EST /CNT=1 /TID=Rn.23943.1 /TIER=ConsEnd /STK=1 /UG=Rn.23943 /UG_TITLE=ESTs AA997048 galactose mutarotase (aldose 1-epimerase) Galm 313843 NM_001007704 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0019318 // hexose metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004034 // aldose 1-epimerase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation 1385073_at AI145639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145639 /DB_XREF=gi:3667438 /DB_XREF=UI-R-BT0-ps-f-03-0-UI.s1 /CLONE=UI-R-BT0-ps-f-03-0-UI /FEA=EST /CNT=1 /TID=Rn.28561.1 /TIER=ConsEnd /STK=1 /UG=Rn.28561 /UG_TITLE=EST AI145639 mCG146312-like LOC100363331 100363331 XM_002726709 /// XM_002729622 1385074_at BE102268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102268 /DB_XREF=gi:8494367 /DB_XREF=UI-R-BT1-aqk-e-03-0-UI.s1 /CLONE=UI-R-BT1-aqk-e-03-0-UI /FEA=EST /CNT=1 /TID=Rn.68617.1 /TIER=ConsEnd /STK=1 /UG=Rn.68617 /UG_TITLE=EST, Moderately similar to 2020285A BRG1 protein (M.musculus) BE102268 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 Smarca2 361745 NM_001004446 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016514 // SWI/SNF complex // inferred from electronic annotation /// 0016514 // SWI/SNF complex // not recorded /// 0070603 // SWI/SNF-type complex // not recorded /// 0070603 // SWI/SNF-type complex // inferred from electronic annotation /// 0071564 // npBAF complex // inferred from electronic annotation /// 0071565 // nBAF complex // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation 1385075_at BE101529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101529 /DB_XREF=gi:8493627 /DB_XREF=UI-R-BO1-apr-a-06-0-UI.s1 /CLONE=UI-R-BO1-apr-a-06-0-UI /FEA=EST /CNT=1 /TID=Rn.74726.1 /TIER=ConsEnd /STK=1 /UG=Rn.74726 /UG_TITLE=EST BE101529 coiled-coil domain containing 32 Ccdc32 296081 NM_001024245 1385076_at BE120749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120749 /DB_XREF=gi:8512894 /DB_XREF=UI-R-BS1-azs-e-12-0-UI.s1 /CLONE=UI-R-BS1-azs-e-12-0-UI /FEA=EST /CNT=1 /TID=Rn.53663.1 /TIER=ConsEnd /STK=1 /UG=Rn.53663 /UG_TITLE=EST BE120749 1385077_at BE097285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097285 /DB_XREF=gi:8488216 /DB_XREF=UI-R-BO1-apv-e-08-0-UI.s1 /CLONE=UI-R-BO1-apv-e-08-0-UI /FEA=EST /CNT=1 /TID=Rn.49583.1 /TIER=ConsEnd /STK=1 /UG=Rn.49583 /UG_TITLE=EST, Moderately similar to GBF1_HUMAN Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 (BFA-resistant GEF 1) (H.sapiens) BE097285 golgi-specific brefeldin A resistant guanine nucleotide exchange factor 1 Gbf1 309451 NM_001191634 /// XM_001066196 /// XM_219953 0006890 // retrograde vesicle-mediated transport, Golgi to ER // not recorded /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0016044 // cellular membrane organization // not recorded /// 0032012 // regulation of ARF protein signal transduction // inferred from electronic annotation /// 0048205 // COPI coating of Golgi vesicle // not recorded 0000139 // Golgi membrane // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005777 // peroxisome // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0005795 // Golgi stack // inferred from direct assay /// 0005801 // cis-Golgi network // inferred from direct assay 0005086 // ARF guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005086 // ARF guanyl-nucleotide exchange factor activity // not recorded /// 0005515 // protein binding // not recorded 1385078_at AA957582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957582 /DB_XREF=gi:4277472 /DB_XREF=UI-R-E1-gb-a-03-0-UI.s1 /CLONE=UI-R-E1-gb-a-03-0-UI /FEA=EST /CNT=1 /TID=Rn.9329.1 /TIER=ConsEnd /STK=1 /UG=Rn.9329 /UG_TITLE=EST AA957582 1385079_at BM387797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387797 /DB_XREF=gi:18187850 /DB_XREF=UI-R-CN1-cjk-i-14-0-UI.s1 /CLONE=UI-R-CN1-cjk-i-14-0-UI /FEA=EST /CNT=1 /TID=Rn.82083.1 /TIER=ConsEnd /STK=1 /UG=Rn.82083 /UG_TITLE=EST BM387797 gasdermin A Gsdma 360619 NM_001108297 0006917 // induction of apoptosis // not recorded 0005737 // cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 1385080_s_at BM387797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387797 /DB_XREF=gi:18187850 /DB_XREF=UI-R-CN1-cjk-i-14-0-UI.s1 /CLONE=UI-R-CN1-cjk-i-14-0-UI /FEA=EST /CNT=1 /TID=Rn.82083.1 /TIER=ConsEnd /STK=1 /UG=Rn.82083 /UG_TITLE=EST BM387797 gasdermin A Gsdma 360619 NM_001108297 0006917 // induction of apoptosis // not recorded 0005737 // cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 1385081_s_at BM386498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386498 /DB_XREF=gi:18186551 /DB_XREF=UI-R-CN1-cjg-k-17-0-UI.s1 /CLONE=UI-R-CN1-cjg-k-17-0-UI /FEA=EST /CNT=1 /TID=Rn.81797.1 /TIER=ConsEnd /STK=1 /UG=Rn.81797 /UG_TITLE=EST BM386498 vacuolar protein sorting 33 homolog A (S. cerevisiae) Vps33a 65081 NM_022961 0006810 // transport // inferred from electronic annotation /// 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // not recorded /// 0030220 // platelet formation // not recorded /// 0032400 // melanosome localization // not recorded /// 0032418 // lysosome localization // not recorded /// 0043473 // pigmentation // not recorded /// 0048070 // regulation of developmental pigmentation // not recorded 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005770 // late endosome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030897 // HOPS complex // not recorded /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded 1385082_at BE120904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120904 /DB_XREF=gi:8513009 /DB_XREF=UI-R-BS1-azt-h-02-0-UI.s1 /CLONE=UI-R-BS1-azt-h-02-0-UI /FEA=EST /CNT=1 /TID=Rn.53677.1 /TIER=ConsEnd /STK=1 /UG=Rn.53677 /UG_TITLE=EST BE120904 1385083_at BG378253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378253 /DB_XREF=gi:13302725 /DB_XREF=UI-R-CV1-bvp-h-07-0-UI.s1 /CLONE=UI-R-CV1-bvp-h-07-0-UI /FEA=EST /CNT=1 /TID=Rn.66557.1 /TIER=ConsEnd /STK=1 /UG=Rn.66557 /UG_TITLE=EST BG378253 similar to hypothetical protein RGD1563056 500434 XM_001065262 /// XM_575796 1385084_at AI059671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059671 /DB_XREF=gi:3333448 /DB_XREF=UI-R-C1-lg-c-02-0-UI.s1 /CLONE=UI-R-C1-lg-c-02-0-UI /FEA=EST /CNT=1 /TID=Rn.21122.1 /TIER=ConsEnd /STK=1 /UG=Rn.21122 /UG_TITLE=EST AI059671 1385085_at BE101971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101971 /DB_XREF=gi:8494069 /DB_XREF=UI-R-BT1-aqi-g-04-0-UI.s1 /CLONE=UI-R-BT1-aqi-g-04-0-UI /FEA=EST /CNT=1 /TID=Rn.68580.1 /TIER=ConsEnd /STK=1 /UG=Rn.68580 /UG_TITLE=EST BE101971 differential display clone 8 Ddc8 498028 NM_001017481 1385086_at BF388785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388785 /DB_XREF=gi:11373609 /DB_XREF=UI-R-BS2-bde-e-06-0-UI.s1 /CLONE=UI-R-BS2-bde-e-06-0-UI /FEA=EST /CNT=1 /TID=Rn.56816.1 /TIER=ConsEnd /STK=1 /UG=Rn.56816 /UG_TITLE=EST, Highly similar to T30178 mitotic checkpoint protein kinase Bub1 - mouse (M.musculus) BF388785 budding uninhibited by benzimidazoles 1 homolog (S. cerevisiae) Bub1 296137 NM_001106507 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007063 // regulation of sister chromatid cohesion // not recorded /// 0008283 // cell proliferation // inferred from expression pattern /// 0009790 // embryo development // not recorded /// 0051983 // regulation of chromosome segregation // not recorded /// 0071173 // spindle assembly checkpoint // not recorded 0000775 // chromosome, centromeric region // not recorded /// 0000776 // kinetochore // not recorded /// 0000777 // condensed chromosome kinetochore // not recorded /// 0000780 // condensed nuclear chromosome, centromeric region // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1385087_at BF406606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406606 /DB_XREF=gi:11394581 /DB_XREF=UI-R-BJ2-bpv-a-08-0-UI.s1 /CLONE=UI-R-BJ2-bpv-a-08-0-UI /FEA=EST /CNT=1 /TID=Rn.71414.1 /TIER=ConsEnd /STK=1 /UG=Rn.71414 /UG_TITLE=EST BF406606 1385088_at AA891356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891356 /DB_XREF=gi:4132045 /DB_XREF=EST195159 /CLONE=RHEAT04 /FEA=EST /CNT=1 /TID=Rn.7280.2 /TIER=ConsEnd /STK=1 /UG=Rn.7280 /UG_TITLE=ESTs AA891356 hypothetical LOC304650 RGD1310262 304650 NM_001107161 1385089_at BM386731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386731 /DB_XREF=gi:18186784 /DB_XREF=UI-R-CN1-cjg-h-08-0-UI.s1 /CLONE=UI-R-CN1-cjg-h-08-0-UI /FEA=EST /CNT=1 /TID=Rn.81845.1 /TIER=ConsEnd /STK=1 /UG=Rn.81845 /UG_TITLE=EST BM386731 Grainyhead-like 1 (Drosophila) Grhl1 313993 XM_002726727 /// XM_234006 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // not recorded 1385090_at BF389852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389852 /DB_XREF=gi:11374689 /DB_XREF=UI-R-BS2-bdp-e-01-0-UI.s1 /CLONE=UI-R-BS2-bdp-e-01-0-UI /FEA=EST /CNT=1 /TID=Rn.57030.1 /TIER=ConsEnd /STK=1 /UG=Rn.57030 /UG_TITLE=EST BF389852 RAD17 homolog (S. pombe) Rad17 310034 NM_001024778 0000077 // DNA damage checkpoint // inferred from electronic annotation /// 0000077 // DNA damage checkpoint // not recorded /// 0006260 // DNA replication // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007093 // mitotic cell cycle checkpoint // inferred from electronic annotation /// 0007093 // mitotic cell cycle checkpoint // not recorded /// 0008156 // negative regulation of DNA replication // inferred from electronic annotation /// 0008156 // negative regulation of DNA replication // not recorded /// 0042325 // regulation of phosphorylation // inferred from electronic annotation /// 0042325 // regulation of phosphorylation // not recorded 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0000781 // chromosome, telomeric region // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1385091_at AW530801 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530801 /DB_XREF=gi:7173215 /DB_XREF=UI-R-C4-alb-f-04-0-UI.s1 /CLONE=UI-R-C4-alb-f-04-0-UI /FEA=EST /CNT=1 /TID=Rn.68027.1 /TIER=ConsEnd /STK=1 /UG=Rn.68027 /UG_TITLE=EST, Weakly similar to T42707 hypothetical protein DKFZp586E041.1 (H.sapiens) AW530801 mediator complex subunit 13 Med13 303403 NM_001107035 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0030518 // steroid hormone receptor signaling pathway // not recorded /// 0030521 // androgen receptor signaling pathway // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0016592 // mediator complex // inferred from electronic annotation /// 0016592 // mediator complex // not recorded 0003712 // transcription cofactor activity // not recorded /// 0003713 // transcription coactivator activity // not recorded /// 0004872 // receptor activity // not recorded /// 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation /// 0016455 // RNA polymerase II transcription mediator activity // not recorded /// 0016563 // transcription activator activity // not recorded /// 0046966 // thyroid hormone receptor binding // not recorded 1385092_at AW523694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523694 /DB_XREF=gi:7166079 /DB_XREF=UI-R-BO0-aih-b-01-0-UI.s1 /CLONE=UI-R-BO0-aih-b-01-0-UI /FEA=EST /CNT=1 /TID=Rn.67711.1 /TIER=ConsEnd /STK=1 /UG=Rn.67711 /UG_TITLE=EST AW523694 1385093_at BG379949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379949 /DB_XREF=gi:13304421 /DB_XREF=UI-R-CS0-bto-b-07-0-UI.s1 /CLONE=UI-R-CS0-bto-b-07-0-UI /FEA=EST /CNT=1 /TID=Rn.21557.2 /TIER=ConsEnd /STK=1 /UG=Rn.21557 /UG_TITLE=ESTs BG379949 similar to hypothetical protein LOC284018 isoform b RGD1565033 498014 NM_001109050 0005515 // protein binding // inferred from electronic annotation 1385094_at BE096277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096277 /DB_XREF=gi:8487208 /DB_XREF=UI-R-BU0-ape-b-07-0-UI.s1 /CLONE=UI-R-BU0-ape-b-07-0-UI /FEA=EST /CNT=1 /TID=Rn.49421.1 /TIER=ConsEnd /STK=1 /UG=Rn.49421 /UG_TITLE=EST BE096277 1385095_at BM384473 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384473 /DB_XREF=gi:18184526 /DB_XREF=UI-R-CN1-cjs-g-03-0-UI.s2 /CLONE=UI-R-CN1-cjs-g-03-0-UI /FEA=EST /CNT=1 /TID=Rn.81425.1 /TIER=ConsEnd /STK=1 /UG=Rn.81425 /UG_TITLE=EST BM384473 ring finger protein 222 Rnf222 363627 NM_001108828 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385096_at BG380261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380261 /DB_XREF=gi:13304733 /DB_XREF=UI-R-CS0-btq-h-10-0-UI.s1 /CLONE=UI-R-CS0-btq-h-10-0-UI /FEA=EST /CNT=1 /TID=Rn.66737.1 /TIER=ConsEnd /STK=1 /UG=Rn.66737 /UG_TITLE=EST BG380261 1385097_at AW527993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527993 /DB_XREF=gi:7170407 /DB_XREF=UI-R-BT1-akg-e-02-0-UI.s1 /CLONE=UI-R-BT1-akg-e-02-0-UI /FEA=EST /CNT=1 /TID=Rn.46731.1 /TIER=ConsEnd /STK=1 /UG=Rn.46731 /UG_TITLE=EST, Weakly similar to A57542 p96 protein - mouse (M.musculus) AW527993 disabled homolog 1 (Drosophila) Dab1 266729 NM_153621 0001764 // neuron migration // inferred from direct assay /// 0001764 // neuron migration // not recorded /// 0007162 // negative regulation of cell adhesion // not recorded /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0007494 // midgut development // inferred from expression pattern /// 0021589 // cerebellum structural organization // not recorded /// 0021795 // cerebral cortex cell migration // not recorded /// 0021799 // cerebral cortex radially oriented cell migration // inferred from mutant phenotype /// 0021799 // cerebral cortex radially oriented cell migration // not recorded /// 0021813 // cell-cell adhesion involved in neuronal-glial interactions involved in cerebral cortex radial glia guided migration // not recorded /// 0021942 // radial glia guided migration of Purkinje cell // not recorded /// 0021987 // cerebral cortex development // inferred from expression pattern /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0045860 // positive regulation of protein kinase activity // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005903 // brush border // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045177 // apical part of cell // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction 1385098_at AW526343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526343 /DB_XREF=gi:7168728 /DB_XREF=UI-R-BO1-ajb-a-11-0-UI.s1 /CLONE=UI-R-BO1-ajb-a-11-0-UI /FEA=EST /CNT=1 /TID=Rn.46170.1 /TIER=ConsEnd /STK=1 /UG=Rn.46170 /UG_TITLE=EST AW526343 1385099_at BG378310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378310 /DB_XREF=gi:13302782 /DB_XREF=UI-R-CV1-bvq-f-02-0-UI.s1 /CLONE=UI-R-CV1-bvq-f-02-0-UI /FEA=EST /CNT=1 /TID=Rn.66560.1 /TIER=ConsEnd /STK=1 /UG=Rn.66560 /UG_TITLE=EST BG378310 sciellin Scel 361086 NM_001108388 0008544 // epidermis development // inferred from electronic annotation /// 0008544 // epidermis development // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // not recorded 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1385100_at AI073049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073049 /DB_XREF=gi:3399243 /DB_XREF=UI-R-Y0-lx-c-01-0-UI.s1 /CLONE=UI-R-Y0-lx-c-01-0-UI /FEA=EST /CNT=1 /TID=Rn.21839.1 /TIER=ConsEnd /STK=1 /UG=Rn.21839 /UG_TITLE=EST AI073049 1385101_a_at AI712625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712625 /DB_XREF=gi:5016425 /DB_XREF=UI-R-AF1-aas-f-07-0-UI.s1 /CLONE=UI-R-AF1-aas-f-07-0-UI /FEA=EST /CNT=1 /TID=Rn.21666.1 /TIER=ConsEnd /STK=1 /UG=Rn.21666 /UG_TITLE=ESTs AI712625 coiled-coil domain containing 127 Ccdc127 308060 NM_198766 1385102_at AI712625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712625 /DB_XREF=gi:5016425 /DB_XREF=UI-R-AF1-aas-f-07-0-UI.s1 /CLONE=UI-R-AF1-aas-f-07-0-UI /FEA=EST /CNT=1 /TID=Rn.21666.1 /TIER=ConsEnd /STK=1 /UG=Rn.21666 /UG_TITLE=ESTs AI712625 coiled-coil domain containing 127 Ccdc127 308060 NM_198766 1385103_at BF390999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390999 /DB_XREF=gi:11375846 /DB_XREF=UI-R-CA1-bcf-a-06-0-UI.s1 /CLONE=UI-R-CA1-bcf-a-06-0-UI /FEA=EST /CNT=1 /TID=Rn.57355.1 /TIER=ConsEnd /STK=1 /UG=Rn.57355 /UG_TITLE=EST, Highly similar to S33513 gene Fif protein - mouse (M.musculus) BF390999 AKT interacting protein Aktip 291906 NM_001011926 0001934 // positive regulation of protein phosphorylation // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0007032 // endosome organization // not recorded /// 0007032 // endosome organization // inferred from sequence or structural similarity /// 0007040 // lysosome organization // not recorded /// 0007040 // lysosome organization // inferred from sequence or structural similarity /// 0008333 // endosome to lysosome transport // not recorded /// 0008333 // endosome to lysosome transport // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0032092 // positive regulation of protein binding // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0045022 // early endosome to late endosome transport // not recorded /// 0045022 // early endosome to late endosome transport // inferred from sequence or structural similarity /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030897 // HOPS complex // not recorded /// 0070695 // FHF complex // not recorded /// 0070695 // FHF complex // inferred from sequence or structural similarity 0005515 // protein binding // not recorded /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1385104_at BE118590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118590 /DB_XREF=gi:8510695 /DB_XREF=UI-R-BJ1-azq-e-05-0-UI.s1 /CLONE=UI-R-BJ1-azq-e-05-0-UI /FEA=EST /CNT=1 /TID=Rn.69538.1 /TIER=ConsEnd /STK=1 /UG=Rn.69538 /UG_TITLE=EST, Weakly similar to S46992 protein p130 - rat (R.norvegicus) BE118590 embryonal Fyn-associated substrate Efs 290212 NM_001106033 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded /// 0019904 // protein domain specific binding // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation 1385105_at BI290727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290727 /DB_XREF=gi:14949570 /DB_XREF=UI-R-DK0-cfy-f-11-0-UI.s1 /CLONE=UI-R-DK0-cfy-f-11-0-UI /FEA=EST /CNT=1 /TID=Rn.79183.1 /TIER=ConsEnd /STK=1 /UG=Rn.79183 /UG_TITLE=EST, Moderately similar to T42652 hypothetical protein DKFZp434E1315.1 (H.sapiens) BI290727 integrator complex subunit 7 Ints7 289382 NM_001191675 /// XM_001067053 /// XM_223075 0016180 // snRNA processing // not recorded 0032039 // integrator complex // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1385106_at BE107024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107024 /DB_XREF=gi:8499109 /DB_XREF=UI-R-BT1-ass-f-11-0-UI.s1 /CLONE=UI-R-BT1-ass-f-11-0-UI /FEA=EST /CNT=1 /TID=Rn.51096.1 /TIER=ConsEnd /STK=1 /UG=Rn.51096 /UG_TITLE=EST BE107024 1385107_at AI137961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137961 /DB_XREF=gi:3638738 /DB_XREF=UI-R-C0-hn-a-01-0-UI.s1 /CLONE=UI-R-C0-hn-a-01-0-UI /FEA=EST /CNT=1 /TID=Rn.27544.1 /TIER=ConsEnd /STK=1 /UG=Rn.27544 /UG_TITLE=EST AI137961 solute carrier family 6 (neurotransmitter transporter), member 14 Slc6a14 298340 NM_001037544 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded /// 0009636 // response to toxin // inferred from electronic annotation /// 0009636 // response to toxin // not recorded 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from direct assay 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation 1385108_at AW524173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524173 /DB_XREF=gi:7166558 /DB_XREF=UI-R-BO0-aii-c-10-0-UI.s1 /CLONE=UI-R-BO0-aii-c-10-0-UI /FEA=EST /CNT=1 /TID=Rn.74458.1 /TIER=ConsEnd /STK=1 /UG=Rn.74458 /UG_TITLE=EST AW524173 1385109_at AA900775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900775 /DB_XREF=gi:4233270 /DB_XREF=UI-R-E0-dn-f-04-0-UI.s1 /CLONE=UI-R-E0-dn-f-04-0-UI /FEA=EST /CNT=1 /TID=Rn.65658.1 /TIER=ConsEnd /STK=1 /UG=Rn.65658 /UG_TITLE=EST AA900775 TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa Taf1d 363017 NM_001014207 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1385110_at AI029476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029476 /DB_XREF=gi:4298830 /DB_XREF=UI-R-C0-iw-b-06-0-UI.s1 /CLONE=UI-R-C0-iw-b-06-0-UI /FEA=EST /CNT=1 /TID=Rn.18234.1 /TIER=ConsEnd /STK=1 /UG=Rn.18234 /UG_TITLE=EST AI029476 1385111_at AA874842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA874842 /DB_XREF=gi:4230725 /DB_XREF=UI-R-E0-cg-g-08-0-UI.s1 /CLONE=UI-R-E0-cg-g-08-0-UI /FEA=EST /CNT=1 /TID=Rn.3141.1 /TIER=ConsEnd /STK=1 /UG=Rn.3141 /UG_TITLE=EST AA874842 1385112_at BF387696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387696 /DB_XREF=gi:11372520 /DB_XREF=UI-R-CA1-bbt-d-12-0-UI.s1 /CLONE=UI-R-CA1-bbt-d-12-0-UI /FEA=EST /CNT=1 /TID=Rn.56581.1 /TIER=ConsEnd /STK=1 /UG=Rn.56581 /UG_TITLE=EST BF387696 1385113_at BF396205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396205 /DB_XREF=gi:11381142 /DB_XREF=UI-R-BS2-bdv-b-03-0-UI.s1 /CLONE=UI-R-BS2-bdv-b-03-0-UI /FEA=EST /CNT=1 /TID=Rn.58550.1 /TIER=ConsEnd /STK=1 /UG=Rn.58550 /UG_TITLE=EST BF396205 Homeo box C10 Hoxc10 315338 XM_001068573 /// XM_235698 0001501 // skeletal system development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009954 // proximal/distal pattern formation // not recorded /// 0021520 // spinal cord motor neuron cell fate specification // not recorded /// 0030326 // embryonic limb morphogenesis // not recorded /// 0050905 // neuromuscular process // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0019907 // cyclin-dependent protein kinase activating kinase holoenzyme complex // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1385114_at BE105737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105737 /DB_XREF=gi:8497803 /DB_XREF=UI-R-BO1-asi-a-08-0-UI.s1 /CLONE=UI-R-BO1-asi-a-08-0-UI /FEA=EST /CNT=1 /TID=Rn.68853.1 /TIER=ConsEnd /STK=1 /UG=Rn.68853 /UG_TITLE=EST BE105737 similar to Protein C20orf46 RGD1564048 499917 XM_001060786 /// XM_575260 0005515 // protein binding // not recorded 1385115_at AI548039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548039 /DB_XREF=gi:4465527 /DB_XREF=UI-R-C3-tc-h-03-0-UI.s1 /CLONE=UI-R-C3-tc-h-03-0-UI /FEA=EST /CNT=1 /TID=Rn.42078.1 /TIER=ConsEnd /STK=1 /UG=Rn.42078 /UG_TITLE=EST AI548039 nephrocan Nepn 309775 NM_001107632 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0030198 // extracellular matrix organization // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded 0005614 // interstitial matrix // not recorded /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0005515 // protein binding // inferred from electronic annotation 1385116_at BF386807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386807 /DB_XREF=gi:11371631 /DB_XREF=UI-R-CA1-bbh-g-02-0-UI.s1 /CLONE=UI-R-CA1-bbh-g-02-0-UI /FEA=EST /CNT=1 /TID=Rn.75286.1 /TIER=ConsEnd /STK=1 /UG=Rn.75286 /UG_TITLE=EST BF386807 protocadherin beta 21 Pcdhb21 307487 NM_001114604 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1385117_at BE101831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101831 /DB_XREF=gi:8493929 /DB_XREF=UI-R-BT1-aqh-h-04-0-UI.s1 /CLONE=UI-R-BT1-aqh-h-04-0-UI /FEA=EST /CNT=1 /TID=Rn.68562.1 /TIER=ConsEnd /STK=1 /UG=Rn.68562 /UG_TITLE=EST BE101831 1385118_at BI292531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292531 /DB_XREF=gi:14953120 /DB_XREF=UI-R-DO0-ciw-o-07-0-UI.s1 /CLONE=UI-R-DO0-ciw-o-07-0-UI /FEA=EST /CNT=1 /TID=Rn.79327.1 /TIER=ConsEnd /STK=1 /UG=Rn.79327 /UG_TITLE=EST BI292531 eukaryotic translation initiation factor 2, subunit 1 alpha Eif2s1 54318 NM_019356 0006412 // translation // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0043558 // regulation of translational initiation in response to stress // inferred from electronic annotation /// 0043558 // regulation of translational initiation in response to stress // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005850 // eukaryotic translation initiation factor 2 complex // inferred from electronic annotation /// 0005851 // eukaryotic translation initiation factor 2B complex // not recorded /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from sequence or structural similarity /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // not recorded /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1385119_at AI043832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043832 /DB_XREF=gi:3290567 /DB_XREF=UI-R-C0-jm-a-01-0-UI.s1 /CLONE=UI-R-C0-jm-a-01-0-UI /FEA=EST /CNT=1 /TID=Rn.11575.2 /TIER=ConsEnd /STK=1 /UG=Rn.11575 /UG_TITLE=ESTs AI043832 1385120_at BG375052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375052 /DB_XREF=gi:13299524 /DB_XREF=UI-R-CV1-bst-e-09-0-UI.s1 /CLONE=UI-R-CV1-bst-e-09-0-UI /FEA=EST /CNT=1 /TID=Rn.66279.1 /TIER=ConsEnd /STK=1 /UG=Rn.66279 /UG_TITLE=EST BG375052 premature ovarian failure 1B Pof1b 302328 NM_001106934 0006508 // proteolysis // inferred from electronic annotation 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1385121_at BI290780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290780 /DB_XREF=gi:14949679 /DB_XREF=UI-R-DK0-cga-c-10-0-UI.s1 /CLONE=UI-R-DK0-cga-c-10-0-UI /FEA=EST /CNT=1 /TID=Rn.79188.1 /TIER=ConsEnd /STK=1 /UG=Rn.79188 /UG_TITLE=EST BI290780 LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) Lsm7 362829 NM_001108732 0005515 // protein binding // not recorded 1385122_at BM386832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386832 /DB_XREF=gi:18186885 /DB_XREF=UI-R-CN1-cjh-k-12-0-UI.s1 /CLONE=UI-R-CN1-cjh-k-12-0-UI /FEA=EST /CNT=1 /TID=Rn.81868.1 /TIER=ConsEnd /STK=1 /UG=Rn.81868 /UG_TITLE=EST BM386832 0005856 // cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation 1385123_at BM386845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386845 /DB_XREF=gi:18186898 /DB_XREF=UI-R-CN1-cjh-m-14-0-UI.s1 /CLONE=UI-R-CN1-cjh-m-14-0-UI /FEA=EST /CNT=1 /TID=Rn.81869.1 /TIER=ConsEnd /STK=1 /UG=Rn.81869 /UG_TITLE=EST BM386845 IK cytokine /// WD repeat domain 55 Ik /// Wdr55 291659 /// 307494 NM_001005537 /// NM_001017932 0006364 // rRNA processing // not recorded /// 0006364 // rRNA processing // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 1385124_at BE114077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114077 /DB_XREF=gi:8506182 /DB_XREF=UI-R-CA0-axn-g-12-0-UI.s1 /CLONE=UI-R-CA0-axn-g-12-0-UI /FEA=EST /CNT=1 /TID=Rn.69292.1 /TIER=ConsEnd /STK=1 /UG=Rn.69292 /UG_TITLE=EST BE114077 tribbles homolog 2 (Drosophila) Trib2 313974 NM_001108015 0006468 // protein phosphorylation // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0045081 // negative regulation of interleukin-10 biosynthetic process // inferred from electronic annotation /// 0045081 // negative regulation of interleukin-10 biosynthetic process // not recorded /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // not recorded 0004672 // protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0055106 // ubiquitin-protein ligase regulator activity // inferred from electronic annotation /// 0055106 // ubiquitin-protein ligase regulator activity // not recorded 1385125_at BF397140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397140 /DB_XREF=gi:11382123 /DB_XREF=UI-R-BS2-bei-f-09-0-UI.s1 /CLONE=UI-R-BS2-bei-f-09-0-UI /FEA=EST /CNT=1 /TID=Rn.75604.1 /TIER=ConsEnd /STK=1 /UG=Rn.75604 /UG_TITLE=EST BF397140 myocardin Myocd 246297 NM_182667 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001560 // regulation of cell growth by extracellular stimulus // inferred from electronic annotation /// 0001560 // regulation of cell growth by extracellular stimulus // not recorded /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0035065 // regulation of histone acetylation // inferred from electronic annotation /// 0035065 // regulation of histone acetylation // not recorded /// 0042692 // muscle cell differentiation // not recorded /// 0042692 // muscle cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045661 // regulation of myoblast differentiation // inferred from electronic annotation /// 0045661 // regulation of myoblast differentiation // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045987 // positive regulation of smooth muscle contraction // not recorded /// 0051145 // smooth muscle cell differentiation // inferred from mutant phenotype /// 0051150 // regulation of smooth muscle cell differentiation // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from mutant phenotype /// 0003713 // transcription coactivator activity // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0035035 // histone acetyltransferase binding // inferred from electronic annotation /// 0035035 // histone acetyltransferase binding // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded 1385126_at AI060037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060037 /DB_XREF=gi:3333814 /DB_XREF=UI-R-C1-kz-b-08-0-UI.s1 /CLONE=UI-R-C1-kz-b-08-0-UI /FEA=EST /CNT=1 /TID=Rn.19350.1 /TIER=ConsEnd /STK=1 /UG=Rn.19350 /UG_TITLE=EST AI060037 membrane associated guanylate kinase, WW and PDZ domain containing 2 Magi2 113970 NM_053621 0007165 // signal transduction // not recorded /// 0043113 // receptor clustering // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation 0004871 // signal transducer activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0019902 // phosphatase binding // inferred from electronic annotation /// 0019902 // phosphatase binding // not recorded /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction 1385127_at BE116364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116364 /DB_XREF=gi:8508469 /DB_XREF=UI-R-BS1-ayc-d-07-0-UI.s1 /CLONE=UI-R-BS1-ayc-d-07-0-UI /FEA=EST /CNT=1 /TID=Rn.52667.1 /TIER=ConsEnd /STK=1 /UG=Rn.52667 /UG_TITLE=EST BE116364 bone morphogenetic protein 5 Bmp5 315824 NM_001108168 0001501 // skeletal system development // not recorded /// 0007389 // pattern specification process // not recorded /// 0030539 // male genitalia development // not recorded /// 0040007 // growth // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0031988 // membrane-bounded vesicle // inferred from direct assay 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0070700 // BMP receptor binding // not recorded 1385128_at BE108716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108716 /DB_XREF=gi:8500821 /DB_XREF=UI-R-CA0-axh-f-03-0-UI.s1 /CLONE=UI-R-CA0-axh-f-03-0-UI /FEA=EST /CNT=1 /TID=Rn.51599.1 /TIER=ConsEnd /STK=1 /UG=Rn.51599 /UG_TITLE=EST BE108716 1385129_at BE112217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112217 /DB_XREF=gi:8504322 /DB_XREF=UI-R-BJ1-avl-b-03-0-UI.s1 /CLONE=UI-R-BJ1-avl-b-03-0-UI /FEA=EST /CNT=1 /TID=Rn.52060.1 /TIER=ConsEnd /STK=1 /UG=Rn.52060 /UG_TITLE=EST, Weakly similar to PLSB RAT GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE, MITOCHONDRIAL PRECURSOR (R.norvegicus) BE112217 glycerol-3-phosphate acyltransferase 2, mitochondrial Gpat2 296130 NM_001168529 0006072 // glycerol-3-phosphate metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0019432 // triglyceride biosynthetic process // not recorded 0005739 // mitochondrion // not recorded 0004366 // glycerol-3-phosphate O-acyltransferase activity // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation 1385130_at BE107866 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107866 /DB_XREF=gi:8499971 /DB_XREF=UI-R-CA0-awx-g-04-0-UI.s1 /CLONE=UI-R-CA0-awx-g-04-0-UI /FEA=EST /CNT=1 /TID=Rn.69050.1 /TIER=ConsEnd /STK=1 /UG=Rn.69050 /UG_TITLE=EST, Weakly similar to GFI1 RAT ZINC FINGER PROTEIN GFI-1 (R.norvegicus) BE107866 Fez family zinc finger 2 Fezf2 305719 NM_001107251 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007413 // axonal fasciculation // inferred from electronic annotation /// 0007413 // axonal fasciculation // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0016358 // dendrite development // inferred from electronic annotation /// 0016358 // dendrite development // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1385131_at BF409527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409527 /DB_XREF=gi:11397502 /DB_XREF=UI-R-CA1-bll-c-07-0-UI.s1 /CLONE=UI-R-CA1-bll-c-07-0-UI /FEA=EST /CNT=1 /TID=Rn.75887.1 /TIER=ConsEnd /STK=1 /UG=Rn.75887 /UG_TITLE=EST BF409527 1385132_at AI044253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044253 /DB_XREF=gi:3291156 /DB_XREF=UI-R-C1-kb-h-11-0-UI.s2 /CLONE=UI-R-C1-kb-h-11-0-UI /FEA=EST /CNT=1 /TID=Rn.15847.1 /TIER=ConsEnd /STK=1 /UG=Rn.15847 /UG_TITLE=EST AI044253 1385133_at BF388651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388651 /DB_XREF=gi:11373475 /DB_XREF=UI-R-BS2-bdb-a-03-0-UI.s1 /CLONE=UI-R-BS2-bdb-a-03-0-UI /FEA=EST /CNT=1 /TID=Rn.56791.1 /TIER=ConsEnd /STK=1 /UG=Rn.56791 /UG_TITLE=EST BF388651 similar to spermatogenesis associated 5-like 1 LOC691729 691729 NM_001109647 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1385134_at BG376382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376382 /DB_XREF=gi:13300854 /DB_XREF=UI-R-CT0-buo-g-12-0-UI.s1 /CLONE=UI-R-CT0-buo-g-12-0-UI /FEA=EST /CNT=1 /TID=Rn.66384.1 /TIER=ConsEnd /STK=1 /UG=Rn.66384 /UG_TITLE=EST BG376382 brachyury 2 T2 681288 NM_001161835 1385135_at BE118923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118923 /DB_XREF=gi:8511028 /DB_XREF=UI-R-BS1-azw-d-04-0-UI.s1 /CLONE=UI-R-BS1-azw-d-04-0-UI /FEA=EST /CNT=1 /TID=Rn.69552.1 /TIER=ConsEnd /STK=1 /UG=Rn.69552 /UG_TITLE=EST, Weakly similar to S21348 probable pol polyprotein-related protein 4 - rat (R.norvegicus) BE118923 1385136_at BM389967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389967 /DB_XREF=gi:18190020 /DB_XREF=UI-R-CN1-cjo-e-02-0-UI.s1 /CLONE=UI-R-CN1-cjo-e-02-0-UI /FEA=EST /CNT=1 /TID=Rn.82353.1 /TIER=ConsEnd /STK=1 /UG=Rn.82353 /UG_TITLE=EST BM389967 leucine rich repeat containing 26 Lrrc26 311803 NM_001014053 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0015459 // potassium channel regulator activity // inferred from sequence or structural similarity 1385137_at AA858603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858603 /DB_XREF=gi:4229935 /DB_XREF=UI-R-E0-bq-a-02-0-UI.s1 /CLONE=UI-R-E0-bq-a-02-0-UI /FEA=EST /CNT=1 /TID=Rn.37533.1 /TIER=ConsEnd /STK=1 /UG=Rn.37533 /UG_TITLE=EST, Weakly similar to T16084 hypothetical protein F16H11.1 - Caenorhabditis elegans (C.elegans) AA858603 similar to hypothetical protein MGC20700 RGD1307722 362824 NM_001108730 0055085 // transmembrane transport // inferred from electronic annotation 1385138_at BF401469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401469 /DB_XREF=gi:11389444 /DB_XREF=UI-R-CA0-bgl-a-01-0-UI.s1 /CLONE=UI-R-CA0-bgl-a-01-0-UI /FEA=EST /CNT=1 /TID=Rn.59806.1 /TIER=ConsEnd /STK=1 /UG=Rn.59806 /UG_TITLE=EST BF401469 1385139_at BE109872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109872 /DB_XREF=gi:8501977 /DB_XREF=UI-R-CA0-axi-d-02-0-UI.s1 /CLONE=UI-R-CA0-axi-d-02-0-UI /FEA=EST /CNT=1 /TID=Rn.51757.1 /TIER=ConsEnd /STK=1 /UG=Rn.51757 /UG_TITLE=EST BE109872 similar to RIKEN cDNA D330028D13 LOC500118 500118 NM_001025771 1385140_at BF386925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386925 /DB_XREF=gi:11371749 /DB_XREF=UI-R-CA1-bbj-b-10-0-UI.s1 /CLONE=UI-R-CA1-bbj-b-10-0-UI /FEA=EST /CNT=1 /TID=Rn.56379.1 /TIER=ConsEnd /STK=1 /UG=Rn.56379 /UG_TITLE=EST BF386925 tripartite motif-containing 9 Trim9 155812 NM_130420 0016079 // synaptic vesicle exocytosis // inferred from expression pattern /// 0035544 // negative regulation of SNARE complex assembly // inferred from direct assay /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0045955 // negative regulation of calcium ion-dependent exocytosis // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0030425 // dendrite // inferred from sequence or structural similarity /// 0030425 // dendrite // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0000149 // SNARE binding // inferred from physical interaction /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1385141_at BF397808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397808 /DB_XREF=gi:11382792 /DB_XREF=UI-R-BS2-bee-h-04-0-UI.s1 /CLONE=UI-R-BS2-bee-h-04-0-UI /FEA=EST /CNT=1 /TID=Rn.58900.1 /TIER=ConsEnd /STK=1 /UG=Rn.58900 /UG_TITLE=EST BF397808 oligodendrocyte transcription factor 3 Olig3 293012 NM_001106269 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded 0030528 // transcription regulator activity // inferred from electronic annotation 1385142_at BI291176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291176 /DB_XREF=gi:14950473 /DB_XREF=UI-R-DK0-cgh-e-06-0-UI.s1 /CLONE=UI-R-DK0-cgh-e-06-0-UI /FEA=EST /CNT=1 /TID=Rn.47852.2 /TIER=ConsEnd /STK=1 /UG=Rn.47852 /UG_TITLE=ESTs BI291176 1385143_at AI548940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548940 /DB_XREF=gi:4466428 /DB_XREF=UI-R-C3-tw-c-07-0-UI.s1 /CLONE=UI-R-C3-tw-c-07-0-UI /FEA=EST /CNT=1 /TID=Rn.74381.1 /TIER=ConsEnd /STK=1 /UG=Rn.74381 /UG_TITLE=EST AI548940 similar to Dedicator of cytokinesis protein 10 (Protein zizimin 3) RGD1561963 301556 XR_085916 /// XR_086342 1385144_at AW524749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524749 /DB_XREF=gi:7167134 /DB_XREF=UI-R-BO0-aib-h-07-0-UI.s1 /CLONE=UI-R-BO0-aib-h-07-0-UI /FEA=EST /CNT=1 /TID=Rn.45919.1 /TIER=ConsEnd /STK=1 /UG=Rn.45919 /UG_TITLE=EST AW524749 1385145_at BE119870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119870 /DB_XREF=gi:8511975 /DB_XREF=UI-R-CA0-ban-h-12-0-UI.s1 /CLONE=UI-R-CA0-ban-h-12-0-UI /FEA=EST /CNT=1 /TID=Rn.53380.1 /TIER=ConsEnd /STK=1 /UG=Rn.53380 /UG_TITLE=EST BE119870 1385146_at BF398614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398614 /DB_XREF=gi:11383609 /DB_XREF=UI-R-BS2-beq-h-04-0-UI.s1 /CLONE=UI-R-BS2-beq-h-04-0-UI /FEA=EST /CNT=1 /TID=Rn.59126.1 /TIER=ConsEnd /STK=1 /UG=Rn.59126 /UG_TITLE=EST BF398614 1385147_at BM383929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383929 /DB_XREF=gi:18183982 /DB_XREF=UI-R-DM1-ckc-c-21-0-UI.s1 /CLONE=UI-R-DM1-ckc-c-21-0-UI /FEA=EST /CNT=1 /TID=Rn.81374.1 /TIER=ConsEnd /STK=1 /UG=Rn.81374 /UG_TITLE=EST BM383929 1385148_at BM391148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391148 /DB_XREF=gi:18191201 /DB_XREF=UI-R-CN1-cjs-g-23-0-UI.s1 /CLONE=UI-R-CN1-cjs-g-23-0-UI /FEA=EST /CNT=1 /TID=Rn.82616.1 /TIER=ConsEnd /STK=1 /UG=Rn.82616 /UG_TITLE=EST BM391148 purinergic receptor P2X, ligand-gated ion channel, 1 P2rx1 25505 NM_001142367 /// NM_012997 0002554 // serotonin secretion by platelet // inferred from electronic annotation /// 0002554 // serotonin secretion by platelet // not recorded /// 0003056 // regulation of vascular smooth muscle contraction // inferred from electronic annotation /// 0003056 // regulation of vascular smooth muscle contraction // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006811 // ion transport // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0006940 // regulation of smooth muscle contraction // not recorded /// 0006940 // regulation of smooth muscle contraction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007320 // insemination // inferred from electronic annotation /// 0007320 // insemination // not recorded /// 0008217 // regulation of blood pressure // inferred from mutant phenotype /// 0010033 // response to organic substance // not recorded /// 0010033 // response to organic substance // inferred from electronic annotation /// 0016265 // death // inferred from electronic annotation /// 0016265 // death // not recorded /// 0019228 // regulation of action potential in neuron // inferred from direct assay /// 0019229 // regulation of vasoconstriction // not recorded /// 0019229 // regulation of vasoconstriction // inferred from electronic annotation /// 0030168 // platelet activation // inferred from electronic annotation /// 0030168 // platelet activation // not recorded /// 0033198 // response to ATP // inferred from electronic annotation /// 0033198 // response to ATP // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0035249 // synaptic transmission, glutamatergic // inferred from mutant phenotype /// 0042310 // vasoconstriction // inferred from mutant phenotype /// 0043270 // positive regulation of ion transport // inferred from electronic annotation /// 0043270 // positive regulation of ion transport // not recorded /// 0046513 // ceramide biosynthetic process // inferred from electronic annotation /// 0046513 // ceramide biosynthetic process // not recorded /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050896 // response to stimulus // not recorded /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051924 // regulation of calcium ion transport // inferred from electronic annotation /// 0051924 // regulation of calcium ion transport // not recorded 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0031240 // external side of cell outer membrane // inferred from electronic annotation /// 0031240 // external side of cell outer membrane // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0045211 // postsynaptic membrane // not recorded 0001614 // purinergic nucleotide receptor activity // inferred from electronic annotation /// 0001614 // purinergic nucleotide receptor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0004931 // extracellular ATP-gated cation channel activity // inferred from direct assay /// 0004931 // extracellular ATP-gated cation channel activity // inferred from mutant phenotype /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // not recorded /// 0005261 // cation channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from direct assay 1385149_at AI502063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502063 /DB_XREF=gi:4399914 /DB_XREF=UI-R-C1-jz-a-02-0-UI.s1 /CLONE=UI-R-C1-jz-a-02-0-UI /FEA=EST /CNT=1 /TID=Rn.35602.1 /TIER=ConsEnd /STK=1 /UG=Rn.35602 /UG_TITLE=EST, Weakly similar to S48509 transcription regulator SPO8 - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AI502063 1385150_at AI045507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045507 /DB_XREF=gi:3292326 /DB_XREF=UI-R-C1-kj-g-07-0-UI.s1 /CLONE=UI-R-C1-kj-g-07-0-UI /FEA=EST /CNT=1 /TID=Rn.20886.1 /TIER=ConsEnd /STK=1 /UG=Rn.20886 /UG_TITLE=EST AI045507 1385151_at BE097096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097096 /DB_XREF=gi:8488027 /DB_XREF=UI-R-BO1-apt-b-05-0-UI.s1 /CLONE=UI-R-BO1-apt-b-05-0-UI /FEA=EST /CNT=1 /TID=Rn.49533.1 /TIER=ConsEnd /STK=1 /UG=Rn.49533 /UG_TITLE=EST BE097096 1385152_at BG381453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381453 /DB_XREF=gi:13305925 /DB_XREF=UI-R-CT0-buj-e-06-0-UI.s1 /CLONE=UI-R-CT0-buj-e-06-0-UI /FEA=EST /CNT=1 /TID=Rn.73386.1 /TIER=ConsEnd /STK=1 /UG=Rn.73386 /UG_TITLE=EST, Moderately similar to IF4G_HUMAN EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA (H.sapiens) BG381453 eukaryotic translation initiation factor 4 gamma, 1 /// similar to eukaryotic translation initiation factor 4, gamma 1 isoform a Eif4g1 /// LOC679630 287986 /// 679630 XM_001060756 /// XM_002724743 /// XM_002727916 /// XM_002727923 /// XM_213569 0006446 // regulation of translational initiation // not recorded /// 0016070 // RNA metabolic process // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0016281 // eukaryotic translation initiation factor 4F complex // inferred from direct assay /// 0016281 // eukaryotic translation initiation factor 4F complex // inferred from mutant phenotype 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008190 // eukaryotic initiation factor 4E binding // inferred from mutant phenotype /// 0008190 // eukaryotic initiation factor 4E binding // inferred from physical interaction 1385153_at AI555743 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555743 /DB_XREF=gi:4488106 /DB_XREF=UI-R-C2p-qs-a-10-0-UI.s1 /CLONE=UI-R-C2p-qs-a-10-0-UI /FEA=EST /CNT=1 /TID=Rn.38588.1 /TIER=ConsEnd /STK=1 /UG=Rn.38588 /UG_TITLE=EST, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) AI555743 zinc finger protein 68 Zfp68 304337 NM_001107128 /// NM_001142945 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385154_at BE121382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121382 /DB_XREF=gi:8513487 /DB_XREF=UI-R-CA0-bax-c-04-0-UI.s1 /CLONE=UI-R-CA0-bax-c-04-0-UI /FEA=EST /CNT=1 /TID=Rn.75251.1 /TIER=ConsEnd /STK=1 /UG=Rn.75251 /UG_TITLE=EST BE121382 OTU domain, ubiquitin aldehyde binding 2 Otub2 314405 NM_001108053 0006519 // cellular amino acid and derivative metabolic process // not recorded /// 0016579 // protein deubiquitination // not recorded /// 0019538 // protein metabolic process // inferred from electronic annotation /// 0070536 // protein K63-linked deubiquitination // not recorded /// 0071108 // protein K48-linked deubiquitination // not recorded 0004843 // ubiquitin-specific protease activity // not recorded /// 0005515 // protein binding // not recorded /// 0008242 // omega peptidase activity // inferred from electronic annotation 1385155_at BI276243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276243 /DB_XREF=gi:14920963 /DB_XREF=UI-R-CX0-bxf-g-04-0-UI.s1 /CLONE=UI-R-CX0-bxf-g-04-0-UI /FEA=EST /CNT=1 /TID=Rn.77559.1 /TIER=ConsEnd /STK=1 /UG=Rn.77559 /UG_TITLE=EST BI276243 leucine rich repeat (in FLII) interacting protein 1 Lrrfip1 367314 NM_001014269 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1385156_at BE120415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120415 /DB_XREF=gi:8512520 /DB_XREF=UI-R-CA0-bam-b-09-0-UI.s1 /CLONE=UI-R-CA0-bam-b-09-0-UI /FEA=EST /CNT=1 /TID=Rn.53557.1 /TIER=ConsEnd /STK=1 /UG=Rn.53557 /UG_TITLE=EST BE120415 1385157_at BF389675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389675 /DB_XREF=gi:11374510 /DB_XREF=UI-R-BS2-bdn-d-09-0-UI.s1 /CLONE=UI-R-BS2-bdn-d-09-0-UI /FEA=EST /CNT=1 /TID=Rn.56986.1 /TIER=ConsEnd /STK=1 /UG=Rn.56986 /UG_TITLE=EST BF389675 chromobox homolog 1 (HP1 beta homolog Drosophila ) Cbx1 360609 XM_001081346 /// XM_340885 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0000775 // chromosome, centromeric region // not recorded /// 0000785 // chromatin // inferred from electronic annotation /// 0000785 // chromatin // not recorded /// 0001939 // female pronucleus // not recorded /// 0001940 // male pronucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005721 // centromeric heterochromatin // not recorded /// 0005819 // spindle // not recorded /// 0010369 // chromocenter // not recorded 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0019899 // enzyme binding // not recorded 1385158_at BI301125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301125 /DB_XREF=gi:14977405 /DB_XREF=UI-R-DN0-cit-f-21-0-UI.s1 /CLONE=UI-R-DN0-cit-f-21-0-UI /FEA=EST /CNT=1 /TID=Rn.22984.3 /TIER=ConsEnd /STK=1 /UG=Rn.22984 /UG_TITLE=ESTs BI301125 chromatin modifying protein 1B Chmp1b 689364 NM_001109533 0015031 // protein transport // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0019904 // protein domain specific binding // not recorded 1385159_at AI500986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI500986 /DB_XREF=gi:4398837 /DB_XREF=UI-R-C2p-rv-f-05-0-UI.s1 /CLONE=UI-R-C2p-rv-f-05-0-UI /FEA=EST /CNT=1 /TID=Rn.73847.1 /TIER=ConsEnd /STK=1 /UG=Rn.73847 /UG_TITLE=EST, Moderately similar to T00271 hypothetical protein KIAA0540 (H.sapiens) AI500986 neurobeachin-like 2 Nbeal2 316014 XR_085901 /// XR_086328 0005488 // binding // inferred from electronic annotation 1385160_at BF401567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401567 /DB_XREF=gi:11389542 /DB_XREF=UI-R-CA0-bgm-b-05-0-UI.s1 /CLONE=UI-R-CA0-bgm-b-05-0-UI /FEA=EST /CNT=1 /TID=Rn.59829.1 /TIER=ConsEnd /STK=1 /UG=Rn.59829 /UG_TITLE=EST BF401567 stabilin 2 Stab2 282580 XM_002726890 /// XM_002729761 0006897 // endocytosis // inferred from direct assay /// 0006897 // endocytosis // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0042742 // defense response to bacterium // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005041 // low-density lipoprotein receptor activity // not recorded /// 0005044 // scavenger receptor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // inferred from direct assay /// 0005540 // hyaluronic acid binding // inferred from electronic annotation /// 0030169 // low-density lipoprotein binding // not recorded /// 0051635 // bacterial cell surface binding // not recorded /// 0051636 // Gram-negative bacterial cell surface binding // not recorded /// 0051636 // Gram-negative bacterial cell surface binding // inferred from sequence or structural similarity 1385161_x_at C06786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:C06786 /DB_XREF=gi:1503562 /DB_XREF=C06786 /FEA=EST /CNT=1 /TID=Rn.27207.1 /TIER=ConsEnd /STK=1 /UG=Rn.27207 /UG_TITLE=EST C06786 1385162_at AW523702 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523702 /DB_XREF=gi:7166087 /DB_XREF=UI-R-BO0-aih-b-09-0-UI.s1 /CLONE=UI-R-BO0-aih-b-09-0-UI /FEA=EST /CNT=1 /TID=Rn.45714.1 /TIER=ConsEnd /STK=1 /UG=Rn.45714 /UG_TITLE=EST AW523702 1385163_at BF397033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397033 /DB_XREF=gi:11382016 /DB_XREF=UI-R-BS2-beh-b-08-0-UI.s1 /CLONE=UI-R-BS2-beh-b-08-0-UI /FEA=EST /CNT=1 /TID=Rn.70725.1 /TIER=ConsEnd /STK=1 /UG=Rn.70725 /UG_TITLE=EST BF397033 ring finger protein 20 Rnf20 313216 NM_001107929 0000209 // protein polyubiquitination // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0010390 // histone monoubiquitination // not recorded /// 0030336 // negative regulation of cell migration // not recorded /// 0032583 // regulation of gene-specific transcription // not recorded /// 0033523 // histone H2B ubiquitination // not recorded /// 0045941 // positive regulation of transcription // not recorded 0000151 // ubiquitin ligase complex // not recorded /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0002039 // p53 binding // not recorded /// 0003713 // transcription coactivator activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0042393 // histone binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1385164_at BE108640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108640 /DB_XREF=gi:8500745 /DB_XREF=UI-R-CA0-axg-f-10-0-UI.s1 /CLONE=UI-R-CA0-axg-f-10-0-UI /FEA=EST /CNT=1 /TID=Rn.51559.1 /TIER=ConsEnd /STK=1 /UG=Rn.51559 /UG_TITLE=EST BE108640 1385165_at BE115944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115944 /DB_XREF=gi:8508049 /DB_XREF=UI-R-BS1-axx-f-12-0-UI.s1 /CLONE=UI-R-BS1-axx-f-12-0-UI /FEA=EST /CNT=1 /TID=Rn.52593.1 /TIER=ConsEnd /STK=1 /UG=Rn.52593 /UG_TITLE=EST BE115944 cytochrome P450, family 39, subfamily a, polypeptide 1 Cyp39a1 301264 NM_001106893 0006699 // bile acid biosynthetic process // not recorded /// 0006707 // cholesterol catabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005789 // endoplasmic reticulum membrane // not recorded 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008387 // steroid 7-alpha-hydroxylase activity // not recorded /// 0008396 // oxysterol 7-alpha-hydroxylase activity // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385166_at BF398185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398185 /DB_XREF=gi:11383171 /DB_XREF=UI-R-BS2-ben-d-09-0-UI.s1 /CLONE=UI-R-BS2-ben-d-09-0-UI /FEA=EST /CNT=1 /TID=Rn.75649.1 /TIER=ConsEnd /STK=1 /UG=Rn.75649 /UG_TITLE=EST BF398185 1385167_at BE099089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099089 /DB_XREF=gi:8490965 /DB_XREF=UI-R-BJ1-ati-b-10-0-UI.s1 /CLONE=UI-R-BJ1-ati-b-10-0-UI /FEA=EST /CNT=1 /TID=Rn.49846.1 /TIER=ConsEnd /STK=1 /UG=Rn.49846 /UG_TITLE=EST, Highly similar to T46411 hypothetical protein DKFZp434M1922.1 (H.sapiens) BE099089 exportin 5 Xpo5 363194 NM_001108789 0005488 // binding // inferred from electronic annotation 1385168_at BM387883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387883 /DB_XREF=gi:18187936 /DB_XREF=UI-R-CN1-cjk-j-23-0-UI.s1 /CLONE=UI-R-CN1-cjk-j-23-0-UI /FEA=EST /CNT=1 /TID=Rn.82110.1 /TIER=ConsEnd /STK=1 /UG=Rn.82110 /UG_TITLE=EST BM387883 similar to receptor-interacting factor 1 RGD1306520 310775 NM_001127485 0005515 // protein binding // not recorded 1385169_at AI230598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230598 /DB_XREF=gi:3814485 /DB_XREF=EST227293 /CLONE=REMCY78 /FEA=EST /CNT=1 /TID=Rn.25152.3 /TIER=ConsEnd /STK=1 /UG=Rn.25152 /UG_TITLE=ESTs AI230598 1385170_at BE120758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120758 /DB_XREF=gi:8512903 /DB_XREF=UI-R-BS1-azs-f-09-0-UI.s1 /CLONE=UI-R-BS1-azs-f-09-0-UI /FEA=EST /CNT=1 /TID=Rn.53665.1 /TIER=ConsEnd /STK=1 /UG=Rn.53665 /UG_TITLE=EST BE120758 0005509 // calcium ion binding // inferred from electronic annotation 1385171_s_at BE115612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115612 /DB_XREF=gi:8507717 /DB_XREF=UI-R-BJ1-avw-h-10-0-UI.s1 /CLONE=UI-R-BJ1-avw-h-10-0-UI /FEA=EST /CNT=1 /TID=Rn.69363.1 /TIER=ConsEnd /STK=1 /UG=Rn.69363 /UG_TITLE=EST BE115612 smoothelin-like 2 Smtnl2 679629 NM_001190998 /// XM_001053796 /// XM_002724513 1385172_at BF389065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389065 /DB_XREF=gi:11373892 /DB_XREF=UI-R-BS2-bdh-d-10-0-UI.s1 /CLONE=UI-R-BS2-bdh-d-10-0-UI /FEA=EST /CNT=1 /TID=Rn.70140.1 /TIER=ConsEnd /STK=1 /UG=Rn.70140 /UG_TITLE=EST, Weakly similar to S33477 hypothetical protein 1 - rat (R.norvegicus) BF389065 1385173_at BE116944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116944 /DB_XREF=gi:8509014 /DB_XREF=UI-R-BS1-azg-f-06-0-UI.s1 /CLONE=UI-R-BS1-azg-f-06-0-UI /FEA=EST /CNT=1 /TID=Rn.52757.1 /TIER=ConsEnd /STK=1 /UG=Rn.52757 /UG_TITLE=EST BE116944 early B-cell factor 3 Ebf3 361668 NM_001108506 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385174_at BE101765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101765 /DB_XREF=gi:8493863 /DB_XREF=UI-R-BT1-aqh-b-03-0-UI.s1 /CLONE=UI-R-BT1-aqh-b-03-0-UI /FEA=EST /CNT=1 /TID=Rn.68553.1 /TIER=ConsEnd /STK=1 /UG=Rn.68553 /UG_TITLE=EST, Weakly similar to MCT7 RAT MAST CELL PROTEASE 7 PRECURSOR (R.norvegicus) BE101765 protease, serine, 46 Prss46 408245 NM_001008865 0006508 // proteolysis // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation 1385175_at BI292168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292168 /DB_XREF=gi:14952411 /DB_XREF=UI-R-DN0-civ-c-09-0-UI.s1 /CLONE=UI-R-DN0-civ-c-09-0-UI /FEA=EST /CNT=1 /TID=Rn.79308.1 /TIER=ConsEnd /STK=1 /UG=Rn.79308 /UG_TITLE=EST, Highly similar to HXBD MOUSE HOMEOBOX PROTEIN HOX-B13 (M.musculus) BI292168 homeo box B13 Hoxb13 303480 NM_001107041 0001525 // angiogenesis // not recorded /// 0002009 // morphogenesis of an epithelium // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0040008 // regulation of growth // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0060527 // prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis // not recorded /// 0060743 // epithelial cell maturation involved in prostate gland development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1385176_at BF415822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415822 /DB_XREF=gi:11403811 /DB_XREF=UI-R-CA1-bkf-d-02-0-UI.s1 /CLONE=UI-R-CA1-bkf-d-02-0-UI /FEA=EST /CNT=1 /TID=Rn.62826.1 /TIER=ConsEnd /STK=1 /UG=Rn.62826 /UG_TITLE=EST BF415822 1385177_at BF390449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390449 /DB_XREF=gi:11375295 /DB_XREF=UI-R-CA1-bch-b-11-0-UI.s1 /CLONE=UI-R-CA1-bch-b-11-0-UI /FEA=EST /CNT=1 /TID=Rn.75445.1 /TIER=ConsEnd /STK=1 /UG=Rn.75445 /UG_TITLE=EST BF390449 1385178_at BE121180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121180 /DB_XREF=gi:8513285 /DB_XREF=UI-R-CA0-bas-a-01-0-UI.s1 /CLONE=UI-R-CA0-bas-a-01-0-UI /FEA=EST /CNT=1 /TID=Rn.69758.1 /TIER=ConsEnd /STK=1 /UG=Rn.69758 /UG_TITLE=EST BE121180 1385179_at BF408798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408798 /DB_XREF=gi:11396773 /DB_XREF=UI-R-BT1-bne-e-01-0-UI.s1 /CLONE=UI-R-BT1-bne-e-01-0-UI /FEA=EST /CNT=1 /TID=Rn.71508.1 /TIER=ConsEnd /STK=1 /UG=Rn.71508 /UG_TITLE=EST BF408798 similar to RIKEN cDNA 4933417A18 RGD1307537 291077 NM_001013885 1385180_at BF397451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397451 /DB_XREF=gi:11382474 /DB_XREF=UI-R-BS2-bez-a-09-0-UI.s1 /CLONE=UI-R-BS2-bez-a-09-0-UI /FEA=EST /CNT=1 /TID=Rn.58836.1 /TIER=ConsEnd /STK=1 /UG=Rn.58836 /UG_TITLE=EST BF397451 1385181_at AI029337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029337 /DB_XREF=gi:4297875 /DB_XREF=UI-R-C0-ix-g-04-0-UI.s1 /CLONE=UI-R-C0-ix-g-04-0-UI /FEA=EST /CNT=1 /TID=Rn.77403.2 /TIER=ConsEnd /STK=1 /UG=Rn.77403 /UG_TITLE=ESTs AI029337 1385182_at BG371843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371843 /DB_XREF=gi:13268380 /DB_XREF=UI-R-CV0-brj-a-04-0-UI.s1 /CLONE=UI-R-CV0-brj-a-04-0-UI /FEA=EST /CNT=1 /TID=Rn.66873.1 /TIER=ConsEnd /STK=1 /UG=Rn.66873 /UG_TITLE=EST BG371843 plakophilin 1 Pkp1 304822 NM_001107181 0005886 // plasma membrane // not recorded /// 0030057 // desmosome // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1385183_at AI549021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549021 /DB_XREF=gi:4466509 /DB_XREF=UI-R-C3-tv-e-11-0-UI.s1 /CLONE=UI-R-C3-tv-e-11-0-UI /FEA=EST /CNT=1 /TID=Rn.67572.1 /TIER=ConsEnd /STK=1 /UG=Rn.67572 /UG_TITLE=EST AI549021 1385184_at AI145766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145766 /DB_XREF=gi:3667565 /DB_XREF=UI-R-BT0-py-e-07-0-UI.s1 /CLONE=UI-R-BT0-py-e-07-0-UI /FEA=EST /CNT=1 /TID=Rn.28608.1 /TIER=ConsEnd /STK=1 /UG=Rn.28608 /UG_TITLE=EST AI145766 1385185_at BF388679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388679 /DB_XREF=gi:11373503 /DB_XREF=UI-R-BS2-bdb-c-08-0-UI.s1 /CLONE=UI-R-BS2-bdb-c-08-0-UI /FEA=EST /CNT=1 /TID=Rn.75369.1 /TIER=ConsEnd /STK=1 /UG=Rn.75369 /UG_TITLE=EST BF388679 1385186_at BE110083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110083 /DB_XREF=gi:8502188 /DB_XREF=UI-R-CA0-axj-h-03-0-UI.s1 /CLONE=UI-R-CA0-axj-h-03-0-UI /FEA=EST /CNT=1 /TID=Rn.51814.1 /TIER=ConsEnd /STK=1 /UG=Rn.51814 /UG_TITLE=EST BE110083 SRY (sex determining region Y)-box 12 Sox12 689988 NM_001168650 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1385187_at AI555738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555738 /DB_XREF=gi:4488101 /DB_XREF=UI-R-C2p-qr-h-11-0-UI.s1 /CLONE=UI-R-C2p-qr-h-11-0-UI /FEA=EST /CNT=1 /TID=Rn.65918.1 /TIER=ConsEnd /STK=1 /UG=Rn.65918 /UG_TITLE=EST, Weakly similar to T00343 hypothetical protein KIAA0584 (H.sapiens) AI555738 glycosyltransferase 25 domain containing 1 Glt25d1 290637 NM_001106067 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation 1385188_at BG379787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379787 /DB_XREF=gi:13304254 /DB_XREF=UI-R-CS0-btn-b-07-0-UI.s1 /CLONE=UI-R-CS0-btn-b-07-0-UI /FEA=EST /CNT=1 /TID=Rn.66699.1 /TIER=ConsEnd /STK=1 /UG=Rn.66699 /UG_TITLE=EST BG379787 similar to hypothetical protein BC011833 RGD1309188 315463 NM_001108129 1385189_at BG372602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372602 /DB_XREF=gi:13269139 /DB_XREF=UI-R-CV1-brs-b-10-0-UI.s1 /CLONE=UI-R-CV1-brs-b-10-0-UI /FEA=EST /CNT=1 /TID=Rn.66938.1 /TIER=ConsEnd /STK=1 /UG=Rn.66938 /UG_TITLE=EST BG372602 dual oxidase maturation factor 1 Duoxa1 311374 NM_001107767 0015031 // protein transport // inferred from electronic annotation 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1385190_at BG376453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376453 /DB_XREF=gi:13300925 /DB_XREF=UI-R-CU0-but-f-11-0-UI.s1 /CLONE=UI-R-CU0-but-f-11-0-UI /FEA=EST /CNT=1 /TID=Rn.66394.1 /TIER=ConsEnd /STK=1 /UG=Rn.66394 /UG_TITLE=EST BG376453 1385191_at AA997253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997253 /DB_XREF=gi:4282713 /DB_XREF=UI-R-C0-hy-c-06-0-UI.s1 /CLONE=UI-R-C0-hy-c-06-0-UI /FEA=EST /CNT=1 /TID=Rn.12664.1 /TIER=ConsEnd /STK=1 /UG=Rn.12664 /UG_TITLE=EST AA997253 1385192_at BE100360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100360 /DB_XREF=gi:8492251 /DB_XREF=UI-R-BJ1-att-f-02-0-UI.s1 /CLONE=UI-R-BJ1-att-f-02-0-UI /FEA=EST /CNT=1 /TID=Rn.49960.1 /TIER=ConsEnd /STK=1 /UG=Rn.49960 /UG_TITLE=EST BE100360 1385193_at BF395008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395008 /DB_XREF=gi:11379969 /DB_XREF=UI-R-CM0-bjg-e-06-0-UI.s1 /CLONE=UI-R-CM0-bjg-e-06-0-UI /FEA=EST /CNT=1 /TID=Rn.58388.1 /TIER=ConsEnd /STK=1 /UG=Rn.58388 /UG_TITLE=EST BF395008 1385194_at BG671668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671668 /DB_XREF=gi:13893767 /DB_XREF=DRNBWC08 /CLONE=DRNBWC08 /FEA=EST /CNT=1 /TID=Rn.17144.2 /TIER=ConsEnd /STK=1 /UG=Rn.17144 /UG_TITLE=ESTs BG671668 RB1-inducible coiled-coil 1 Rb1cc1 312927 NM_001107901 0001889 // liver development // not recorded /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0007254 // JNK cascade // not recorded /// 0007507 // heart development // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0045793 // positive regulation of cell size // not recorded 0005634 // nucleus // not recorded /// 0070969 // ULK1-ATG13-FIP200 complex // not recorded 0005515 // protein binding // not recorded 1385195_at BF390112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390112 /DB_XREF=gi:11374954 /DB_XREF=UI-R-CA1-bcj-d-04-0-UI.s1 /CLONE=UI-R-CA1-bcj-d-04-0-UI /FEA=EST /CNT=1 /TID=Rn.70229.1 /TIER=ConsEnd /STK=1 /UG=Rn.70229 /UG_TITLE=EST BF390112 1385196_at AA866391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866391 /DB_XREF=gi:4230571 /DB_XREF=UI-R-A0-aj-f-08-0-UI.s3 /CLONE=UI-R-A0-aj-f-08-0-UI /FEA=EST /CNT=1 /TID=Rn.3089.1 /TIER=ConsEnd /STK=1 /UG=Rn.3089 /UG_TITLE=EST AA866391 1385197_at BF388053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388053 /DB_XREF=gi:11372877 /DB_XREF=UI-R-CA1-bbx-g-02-0-UI.s1 /CLONE=UI-R-CA1-bbx-g-02-0-UI /FEA=EST /CNT=1 /TID=Rn.56671.1 /TIER=ConsEnd /STK=1 /UG=Rn.56671 /UG_TITLE=EST BF388053 1385198_at BF398364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398364 /DB_XREF=gi:11383353 /DB_XREF=UI-R-BS2-bey-h-12-0-UI.s1 /CLONE=UI-R-BS2-bey-h-12-0-UI /FEA=EST /CNT=1 /TID=Rn.59054.1 /TIER=ConsEnd /STK=1 /UG=Rn.59054 /UG_TITLE=EST, Moderately similar to RETROVIRUS-RELATED POL POLYPROTEIN (M.musculus) BF398364 1385199_a_at AI073196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073196 /DB_XREF=gi:3399390 /DB_XREF=UI-R-Y0-mi-h-07-0-UI.s1 /CLONE=UI-R-Y0-mi-h-07-0-UI /FEA=EST /CNT=1 /TID=Rn.21856.1 /TIER=ConsEnd /STK=1 /UG=Rn.21856 /UG_TITLE=ESTs, Weakly similar to DDRT helix-destabilizing protein - rat (R.norvegicus) AI073196 RNA binding motif protein 34 Rbm34 307956 NM_001014015 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1385200_at BI295230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295230 /DB_XREF=gi:14958467 /DB_XREF=UI-R-DK0-cet-d-05-0-UI.s1 /CLONE=UI-R-DK0-cet-d-05-0-UI /FEA=EST /CNT=1 /TID=Rn.79684.1 /TIER=ConsEnd /STK=1 /UG=Rn.79684 /UG_TITLE=EST BI295230 olfactomedin-like 2A Olfml2a 296708 NM_001106572 0030198 // extracellular matrix organization // not recorded 0031012 // extracellular matrix // not recorded 0042803 // protein homodimerization activity // not recorded /// 0050840 // extracellular matrix binding // not recorded 1385201_at BE098235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098235 /DB_XREF=gi:8490098 /DB_XREF=UI-R-BJ1-asz-d-05-0-UI.s1 /CLONE=UI-R-BJ1-asz-d-05-0-UI /FEA=EST /CNT=1 /TID=Rn.49775.1 /TIER=ConsEnd /STK=1 /UG=Rn.49775 /UG_TITLE=EST BE098235 transmembrane protein 182 Tmem182 501129 NM_001109305 1385202_at BE118820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118820 /DB_XREF=gi:8510925 /DB_XREF=UI-R-BS1-azv-b-06-0-UI.s1 /CLONE=UI-R-BS1-azv-b-06-0-UI /FEA=EST /CNT=1 /TID=Rn.53069.1 /TIER=ConsEnd /STK=1 /UG=Rn.53069 /UG_TITLE=EST BE118820 1385203_at BE120707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120707 /DB_XREF=gi:8512812 /DB_XREF=UI-R-CA0-bay-f-03-0-UI.s1 /CLONE=UI-R-CA0-bay-f-03-0-UI /FEA=EST /CNT=1 /TID=Rn.53642.1 /TIER=ConsEnd /STK=1 /UG=Rn.53642 /UG_TITLE=EST BE120707 1385204_at AI639503 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639503 /DB_XREF=gi:4700537 /DB_XREF=rx01931s /CLONE=rx01931 /FEA=EST /CNT=1 /TID=Rn.64790.1 /TIER=ConsEnd /STK=1 /UG=Rn.64790 /UG_TITLE=EST AI639503 DDB1 and CUL4 associated factor 17 Dcaf17 499807 NM_001177688 /// XM_001060141 /// XM_575147 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0080008 // CUL4 RING ubiquitin ligase complex // not recorded /// 0080008 // CUL4 RING ubiquitin ligase complex // inferred from sequence or structural similarity /// 0080008 // CUL4 RING ubiquitin ligase complex // inferred from electronic annotation 1385205_at BF409092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409092 /DB_XREF=gi:11397067 /DB_XREF=UI-R-BT1-bkl-h-06-0-UI.s1 /CLONE=UI-R-BT1-bkl-h-06-0-UI /FEA=EST /CNT=1 /TID=Rn.61246.1 /TIER=ConsEnd /STK=1 /UG=Rn.61246 /UG_TITLE=EST BF409092 1385206_at BF406798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406798 /DB_XREF=gi:11394773 /DB_XREF=UI-R-BJ2-bpp-c-04-0-UI.s1 /CLONE=UI-R-BJ2-bpp-c-04-0-UI /FEA=EST /CNT=1 /TID=Rn.71419.1 /TIER=ConsEnd /STK=1 /UG=Rn.71419 /UG_TITLE=EST, Moderately similar to RAS-RELATED PROTEIN RAB-1A (R.norvegicus) BF406798 RAB1B, member RAS oncogene family Rab1b 100126191 NM_001109979 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1385207_at AI145562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145562 /DB_XREF=gi:3667361 /DB_XREF=UI-R-BT0-qi-c-05-0-UI.s1 /CLONE=UI-R-BT0-qi-c-05-0-UI /FEA=EST /CNT=1 /TID=Rn.28537.1 /TIER=ConsEnd /STK=1 /UG=Rn.28537 /UG_TITLE=EST AI145562 hypothetical LOC289530 RGD1310384 289530 XM_001064794 /// XM_214018 1385208_at BF391430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391430 /DB_XREF=gi:11376283 /DB_XREF=UI-R-CA1-bcx-d-03-0-UI.s1 /CLONE=UI-R-CA1-bcx-d-03-0-UI /FEA=EST /CNT=1 /TID=Rn.57506.1 /TIER=ConsEnd /STK=1 /UG=Rn.57506 /UG_TITLE=ESTs BF391430 similar to RIKEN cDNA 2310057M21 RGD1305014 309029 NM_001014025 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1385209_at BE105313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105313 /DB_XREF=gi:8497415 /DB_XREF=UI-R-BX0-asd-a-07-0-UI.s1 /CLONE=UI-R-BX0-asd-a-07-0-UI /FEA=EST /CNT=1 /TID=Rn.68832.1 /TIER=ConsEnd /STK=1 /UG=Rn.68832 /UG_TITLE=EST, Moderately similar to MOZ_HUMAN MONOCYTIC LEUKEMIA ZINC FINGER PROTEIN (H.sapiens) BE105313 MYST histone acetyltransferase (monocytic leukemia) 3 Myst3 306571 NM_001100570 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016573 // histone acetylation // not recorded /// 0016573 // histone acetylation // inferred from sequence or structural similarity /// 0016573 // histone acetylation // inferred from electronic annotation /// 0030099 // myeloid cell differentiation // not recorded /// 0030099 // myeloid cell differentiation // inferred from sequence or structural similarity /// 0030099 // myeloid cell differentiation // inferred from electronic annotation /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0035019 // somatic stem cell maintenance // not recorded /// 0035162 // embryonic hemopoiesis // inferred from electronic annotation /// 0035162 // embryonic hemopoiesis // not recorded /// 0043966 // histone H3 acetylation // not recorded /// 0043966 // histone H3 acetylation // inferred from sequence or structural similarity /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0070776 // MOZ/MORF histone acetyltransferase complex // not recorded /// 0070776 // MOZ/MORF histone acetyltransferase complex // inferred from sequence or structural similarity /// 0070776 // MOZ/MORF histone acetyltransferase complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // not recorded /// 0004402 // histone acetyltransferase activity // inferred from sequence or structural similarity /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from sequence or structural similarity /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016407 // acetyltransferase activity // not recorded /// 0016407 // acetyltransferase activity // inferred from sequence or structural similarity /// 0016407 // acetyltransferase activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385210_at BF389450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389450 /DB_XREF=gi:11374281 /DB_XREF=UI-R-BS2-bdj-h-12-0-UI.s1 /CLONE=UI-R-BS2-bdj-h-12-0-UI /FEA=EST /CNT=1 /TID=Rn.75412.1 /TIER=ConsEnd /STK=1 /UG=Rn.75412 /UG_TITLE=EST BF389450 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0051020 // GTPase binding // inferred from electronic annotation 1385211_at BE116091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116091 /DB_XREF=gi:8508196 /DB_XREF=UI-R-BS1-axz-c-12-0-UI.s1 /CLONE=UI-R-BS1-axz-c-12-0-UI /FEA=EST /CNT=1 /TID=Rn.69389.1 /TIER=ConsEnd /STK=1 /UG=Rn.69389 /UG_TITLE=EST BE116091 rCG31991-like LOC100361585 100361585 XM_002726532 /// XM_002729479 1385212_at AI603192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI603192 /DB_XREF=gi:4612353 /DB_XREF=UI-R-AF0-ye-b-09-0-UI.s1 /CLONE=UI-R-AF0-ye-b-09-0-UI /FEA=EST /CNT=1 /TID=Rn.40236.1 /TIER=ConsEnd /STK=1 /UG=Rn.40236 /UG_TITLE=EST AI603192 1385213_at AW524454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524454 /DB_XREF=gi:7166839 /DB_XREF=UI-R-BO0-ahx-f-03-0-UI.s1 /CLONE=UI-R-BO0-ahx-f-03-0-UI /FEA=EST /CNT=1 /TID=Rn.45852.1 /TIER=ConsEnd /STK=1 /UG=Rn.45852 /UG_TITLE=EST AW524454 epithelial stromal interaction 1 (breast) Epsti1 498547 NM_001044257 1385214_at BF391513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391513 /DB_XREF=gi:11376330 /DB_XREF=UI-R-CA1-bcx-h-08-0-UI.s1 /CLONE=UI-R-CA1-bcx-h-08-0-UI /FEA=EST /CNT=1 /TID=Rn.57517.1 /TIER=ConsEnd /STK=1 /UG=Rn.57517 /UG_TITLE=EST, Highly similar to I84741 RNA helicase - mouse (M.musculus) BF391513 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked Ddx3x 317335 NM_001108246 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1385215_at BF388857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388857 /DB_XREF=gi:11373681 /DB_XREF=UI-R-BS2-bdf-d-08-0-UI.s1 /CLONE=UI-R-BS2-bdf-d-08-0-UI /FEA=EST /CNT=1 /TID=Rn.64331.1 /TIER=ConsEnd /STK=1 /UG=Rn.64331 /UG_TITLE=ESTs, Highly similar to MTG8 MOUSE MTG8 PROTEIN (M.musculus) BF388857 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) Runx1t1 362489 NM_001108657 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0045444 // fat cell differentiation // not recorded /// 0051101 // regulation of DNA binding // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1385216_at BI290864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290864 /DB_XREF=gi:14949851 /DB_XREF=UI-R-DK0-cgi-d-08-0-UI.s1 /CLONE=UI-R-DK0-cgi-d-08-0-UI /FEA=EST /CNT=1 /TID=Rn.79197.1 /TIER=ConsEnd /STK=1 /UG=Rn.79197 /UG_TITLE=EST BI290864 1385217_at BM385870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385870 /DB_XREF=gi:18185923 /DB_XREF=UI-R-DM1-cke-n-03-0-UI.s1 /CLONE=UI-R-DM1-cke-n-03-0-UI /FEA=EST /CNT=1 /TID=Rn.81667.1 /TIER=ConsEnd /STK=1 /UG=Rn.81667 /UG_TITLE=EST BM385870 1385218_at AI044551 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044551 /DB_XREF=gi:3291412 /DB_XREF=UI-R-C1-kc-h-11-0-UI.s1 /CLONE=UI-R-C1-kc-h-11-0-UI /FEA=EST /CNT=1 /TID=Rn.15944.1 /TIER=ConsEnd /STK=1 /UG=Rn.15944 /UG_TITLE=EST AI044551 nucleolar complex associated 3 homolog (S. cerevisiae) Noc3l 361753 NM_001108523 0045444 // fat cell differentiation // not recorded 0005730 // nucleolus // not recorded /// 0016607 // nuclear speck // not recorded 0005488 // binding // inferred from electronic annotation 1385219_a_at AI071110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071110 /DB_XREF=gi:3397325 /DB_XREF=UI-R-C2-ms-f-11-0-UI.s1 /CLONE=UI-R-C2-ms-f-11-0-UI /FEA=EST /CNT=1 /TID=Rn.45817.3 /TIER=ConsEnd /STK=1 /UG=Rn.45817 /UG_TITLE=ESTs, Weakly similar to A44437 regenerating liver inhibitory factor RLIF-1 - rat (R.norvegicus) AI071110 RBSC-skeletrophin LOC474147 474147 XM_001052967 /// XM_001052968 /// XM_002726666 /// XM_002729580 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385220_at BG377563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377563 /DB_XREF=gi:13302035 /DB_XREF=UI-R-CU0-buz-c-07-0-UI.s1 /CLONE=UI-R-CU0-buz-c-07-0-UI /FEA=EST /CNT=1 /TID=Rn.76436.1 /TIER=ConsEnd /STK=1 /UG=Rn.76436 /UG_TITLE=EST BG377563 Zwilch, kinetochore associated, homolog (Drosophila) Zwilch 691493 XM_001078534 /// XM_002727046 0007093 // mitotic cell cycle checkpoint // not recorded 0000776 // kinetochore // not recorded 0005515 // protein binding // not recorded 1385221_at BE099682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099682 /DB_XREF=gi:8491561 /DB_XREF=UI-R-BJ1-atk-b-03-0-UI.s1 /CLONE=UI-R-BJ1-atk-b-03-0-UI /FEA=EST /CNT=1 /TID=Rn.49890.1 /TIER=ConsEnd /STK=1 /UG=Rn.49890 /UG_TITLE=EST BE099682 1385222_at BE116545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116545 /DB_XREF=gi:8508650 /DB_XREF=UI-R-BS1-ayj-e-05-0-UI.s1 /CLONE=UI-R-BS1-ayj-e-05-0-UI /FEA=EST /CNT=1 /TID=Rn.52693.1 /TIER=ConsEnd /STK=1 /UG=Rn.52693 /UG_TITLE=EST BE116545 1385223_at BF418672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418672 /DB_XREF=gi:11406661 /DB_XREF=UI-R-BJ2-bqi-f-05-0-UI.s1 /CLONE=UI-R-BJ2-bqi-f-05-0-UI /FEA=EST /CNT=1 /TID=Rn.63441.1 /TIER=ConsEnd /STK=1 /UG=Rn.63441 /UG_TITLE=EST BF418672 1385224_at AA819531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819531 /DB_XREF=gi:4228667 /DB_XREF=UI-R-A0-bf-f-02-0-UI.s1 /CLONE=UI-R-A0-bf-f-02-0-UI /FEA=EST /CNT=1 /TID=Rn.16855.1 /TIER=ConsEnd /STK=1 /UG=Rn.16855 /UG_TITLE=EST, Weakly similar to VPP1 RAT CLATHRIN-COATED VESICLESYNAPTIC VESICLE PROTON PUMP 116 KDA SUBUNIT (R.norvegicus) AA819531 T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 Tcirg1 293650 NM_199089 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // non-traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from sequence or structural similarity /// 0033177 // proton-transporting two-sector ATPase complex, proton-transporting domain // inferred from electronic annotation 0015078 // hydrogen ion transmembrane transporter activity // non-traceable author statement /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation 1385225_at BF386619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386619 /DB_XREF=gi:11371443 /DB_XREF=UI-R-CA1-bbf-e-11-0-UI.s1 /CLONE=UI-R-CA1-bbf-e-11-0-UI /FEA=EST /CNT=1 /TID=Rn.56309.1 /TIER=ConsEnd /STK=1 /UG=Rn.56309 /UG_TITLE=EST BF386619 similar to sphingomyelin phosphodiesterase 3, neutral membrane RGD1565316 315091 NM_001115026 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0043015 // gamma-tubulin binding // inferred from electronic annotation 1385226_at AI137059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137059 /DB_XREF=gi:3637836 /DB_XREF=UI-R-C2p-oj-f-02-0-UI.s1 /CLONE=UI-R-C2p-oj-f-02-0-UI /FEA=EST /CNT=1 /TID=Rn.27301.1 /TIER=ConsEnd /STK=1 /UG=Rn.27301 /UG_TITLE=EST AI137059 potassium channel tetramerisation domain containing 11 Kctd11 363634 NM_001108831 0006813 // potassium ion transport // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0030154 // cell differentiation // not recorded /// 0042127 // regulation of cell proliferation // not recorded 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1385227_at BF398245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398245 /DB_XREF=gi:11383233 /DB_XREF=UI-R-BS2-bfb-c-05-0-UI.s1 /CLONE=UI-R-BS2-bfb-c-05-0-UI /FEA=EST /CNT=1 /TID=Rn.59018.1 /TIER=ConsEnd /STK=1 /UG=Rn.59018 /UG_TITLE=EST, Weakly similar to B56229 lymphoid transcription factor IkarosLyF-1, form V - mouse (M.musculus) BF398245 trichorhinophalangeal syndrome I homolog (human) Trps1 299897 NM_001134837 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385228_x_at AI059117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059117 /DB_XREF=gi:3332894 /DB_XREF=UI-R-C1-lr-h-03-0-UI.s1 /CLONE=UI-R-C1-lr-h-03-0-UI /FEA=EST /CNT=1 /TID=Rn.19072.2 /TIER=ConsEnd /STK=1 /UG=Rn.19072 /UG_TITLE=ESTs AI059117 1385229_at AW524146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524146 /DB_XREF=gi:7166531 /DB_XREF=UI-R-BO0-aii-a-07-0-UI.s1 /CLONE=UI-R-BO0-aii-a-07-0-UI /FEA=EST /CNT=1 /TID=Rn.45788.1 /TIER=ConsEnd /STK=1 /UG=Rn.45788 /UG_TITLE=EST AW524146 protocadherin 20 Pcdh20 306081 NM_001107280 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1385230_at BF387549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387549 /DB_XREF=gi:11372373 /DB_XREF=UI-R-CA1-bbn-f-07-0-UI.s1 /CLONE=UI-R-CA1-bbn-f-07-0-UI /FEA=EST /CNT=1 /TID=Rn.69985.1 /TIER=ConsEnd /STK=1 /UG=Rn.69985 /UG_TITLE=EST BF387549 glycosyltransferase Aer61 Aer61 494219 NM_001009502 0005576 // extracellular region // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1385231_at AI044528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044528 /DB_XREF=gi:3291389 /DB_XREF=UI-R-C1-kc-d-09-0-UI.s1 /CLONE=UI-R-C1-kc-d-09-0-UI /FEA=EST /CNT=1 /TID=Rn.20767.1 /TIER=ConsEnd /STK=1 /UG=Rn.20767 /UG_TITLE=EST AI044528 1385232_at AI045540 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045540 /DB_XREF=gi:3292359 /DB_XREF=UI-R-C1-jz-d-06-0-UI.s2 /CLONE=UI-R-C1-jz-d-06-0-UI /FEA=EST /CNT=1 /TID=Rn.20891.1 /TIER=ConsEnd /STK=1 /UG=Rn.20891 /UG_TITLE=EST, Weakly similar to RFP MOUSE ZINC-FINGER PROTEIN RFP (M.musculus) AI045540 tripartite motif-containing 62 Trim62 313045 XM_001060201 /// XM_232757 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1385233_at AI058505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058505 /DB_XREF=gi:3332282 /DB_XREF=UI-R-C1-kv-d-05-0-UI.s1 /CLONE=UI-R-C1-kv-d-05-0-UI /FEA=EST /CNT=1 /TID=Rn.20962.1 /TIER=ConsEnd /STK=1 /UG=Rn.20962 /UG_TITLE=EST, Weakly similar to RRM1_HUMAN PUTATIVE RIBOSOMAL RNA METHYLTRANSFERASE 1 (H.sapiens) AI058505 FtsJ homolog 2 (E. coli) Ftsj2 304323 NM_001107125 0006364 // rRNA processing // inferred from electronic annotation /// 0031167 // rRNA methylation // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008173 // RNA methyltransferase activity // inferred from electronic annotation /// 0008650 // rRNA (uridine-2'-O-)-methyltransferase activity // inferred from electronic annotation 1385234_at AI059587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059587 /DB_XREF=gi:3333364 /DB_XREF=UI-R-C1-lj-e-10-0-UI.s1 /CLONE=UI-R-C1-lj-e-10-0-UI /FEA=EST /CNT=1 /TID=Rn.21107.1 /TIER=ConsEnd /STK=1 /UG=Rn.21107 /UG_TITLE=EST AI059587 1385235_at AA818804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818804 /DB_XREF=gi:4227480 /DB_XREF=UI-R-A0-ar-b-11-0-UI.s1 /CLONE=UI-R-A0-ar-b-11-0-UI /FEA=EST /CNT=1 /TID=Rn.24036.2 /TIER=ConsEnd /STK=1 /UG=Rn.24036 /UG_TITLE=ESTs, Highly similar to ataxin 2 binding protein 1; ataxin 2-binding protein 1 (Mus musculus) (M.musculus) AA818804 ataxin 2 binding protein 1 A2bp1 302920 NM_001106974 0005737 // cytoplasm // not recorded /// 0005802 // trans-Golgi network // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded 1385236_at AA875617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875617 /DB_XREF=gi:4231494 /DB_XREF=UI-R-E0-cv-d-09-0-UI.s1 /CLONE=UI-R-E0-cv-d-09-0-UI /FEA=EST /CNT=1 /TID=Rn.2977.2 /TIER=ConsEnd /STK=1 /UG=Rn.2977 /UG_TITLE=ESTs, Weakly similar to OAZ2 MOUSE ORNITHINE DECARBOXYLASE ANTIZYME 2 (M.musculus) AA875617 1385237_at AA874838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA874838 /DB_XREF=gi:4230721 /DB_XREF=UI-R-E0-cg-g-03-0-UI.s1 /CLONE=UI-R-E0-cg-g-03-0-UI /FEA=EST /CNT=1 /TID=Rn.3140.2 /TIER=ConsEnd /STK=1 /UG=Rn.3140 /UG_TITLE=ESTs AA874838 1385238_at AA926087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926087 /DB_XREF=gi:4237278 /DB_XREF=UI-R-A1-eu-b-08-0-UI.s1 /CLONE=UI-R-A1-eu-b-08-0-UI /FEA=EST /CNT=1 /TID=Rn.32721.1 /TIER=ConsEnd /STK=1 /UG=Rn.32721 /UG_TITLE=EST AA926087 1385239_at AI045150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045150 /DB_XREF=gi:3291969 /DB_XREF=UI-R-C1-kk-b-09-0-UI.s1 /CLONE=UI-R-C1-kk-b-09-0-UI /FEA=EST /CNT=1 /TID=Rn.33362.1 /TIER=ConsEnd /STK=1 /UG=Rn.33362 /UG_TITLE=EST AI045150 1385240_at AW523099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523099 /DB_XREF=gi:7165484 /DB_XREF=UI-R-BO0-ahq-c-08-0-UI.s1 /CLONE=UI-R-BO0-ahq-c-08-0-UI /FEA=EST /CNT=1 /TID=Rn.45557.1 /TIER=ConsEnd /STK=1 /UG=Rn.45557 /UG_TITLE=EST AW523099 WD repeat domain 33 Wdr33 307524 NM_001107398 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1385241_at AI071210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071210 /DB_XREF=gi:3397425 /DB_XREF=UI-R-C2-my-d-11-0-UI.s1 /CLONE=UI-R-C2-my-d-11-0-UI /FEA=EST /CNT=1 /TID=Rn.54090.1 /TIER=ConsEnd /STK=1 /UG=Rn.54090 /UG_TITLE=EST, Weakly similar to A25556 hypothetical 21.2K protein (R.norvegicus) AI071210 1385242_at AA900354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900354 /DB_XREF=gi:4232845 /DB_XREF=UI-R-E0-cp-h-05-0-UI.s2 /CLONE=UI-R-E0-cp-h-05-0-UI /FEA=EST /CNT=1 /TID=Rn.6092.2 /TIER=ConsEnd /STK=1 /UG=Rn.6092 /UG_TITLE=ESTs AA900354 SPARC related modular calcium binding 2 Smoc2 292401 NM_001106215 0007165 // signal transduction // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // not recorded /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005614 // interstitial matrix // inferred from electronic annotation /// 0005614 // interstitial matrix // not recorded /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005539 // glycosaminoglycan binding // not recorded /// 0005539 // glycosaminoglycan binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded 1385243_at AI180340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180340 /DB_XREF=gi:3730978 /DB_XREF=EST224084 /CLONE=RSPCV05 /FEA=EST /CNT=1 /TID=Rn.6545.3 /TIER=ConsEnd /STK=1 /UG=Rn.6545 /UG_TITLE=ESTs AI180340 1385244_at BF390070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390070 /DB_XREF=gi:11374912 /DB_XREF=UI-R-BS2-bdr-h-07-0-UI.s1 /CLONE=UI-R-BS2-bdr-h-07-0-UI /FEA=EST /CNT=1 /TID=Rn.70224.1 /TIER=ConsEnd /STK=1 /UG=Rn.70224 /UG_TITLE=EST, Weakly similar to I49283 ADAM 4 protein precursor - mouse (M.musculus) BF390070 a disintegrin and metalloprotease domain 4 Adam4 57022 NM_020305 0006508 // proteolysis // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1385245_at AI071184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071184 /DB_XREF=gi:3397399 /DB_XREF=UI-R-C2-my-f-04-0-UI.s1 /CLONE=UI-R-C2-my-f-04-0-UI /FEA=EST /CNT=1 /TID=Rn.73740.1 /TIER=ConsEnd /STK=1 /UG=Rn.73740 /UG_TITLE=EST, Highly similar to GP42 RAT CELL SURFACE GLYCOPROTEIN GP42 PRECURSOR (R.norvegicus) AI071184 cell surface glycoprotein gp42 LOC305103 305103 NM_001164726 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 1385246_at AI717564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717564 /DB_XREF=gi:5034820 /DB_XREF=UI-R-Y0-acp-g-06-0-UI.s1 /CLONE=UI-R-Y0-acp-g-06-0-UI /FEA=EST /CNT=1 /TID=Rn.74356.1 /TIER=ConsEnd /STK=1 /UG=Rn.74356 /UG_TITLE=EST AI717564 1385247_at AA858993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858993 /DB_XREF=gi:4229265 /DB_XREF=UI-R-A0-bi-b-11-0-UI.s1 /CLONE=UI-R-A0-bi-b-11-0-UI /FEA=EST /CNT=1 /TID=Rn.81183.1 /TIER=ConsEnd /STK=1 /UG=Rn.81183 /UG_TITLE=EST AA858993 UDP glycosyltransferase 2 family, polypeptide B Ugt2b 24862 NM_031533 0008152 // metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0015020 // glucuronosyltransferase activity // inferred from direct assay /// 0015020 // glucuronosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1385248_a_at AA997590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997590 /DB_XREF=gi:4284786 /DB_XREF=UI-R-C0-hy-c-08-0-UI.s1 /CLONE=UI-R-C0-hy-c-08-0-UI /FEA=EST /CNT=1 /TID=Rn.12119.3 /TIER=ConsEnd /STK=1 /UG=Rn.12119 /UG_TITLE=ESTs, Weakly similar to FMOD RAT FIBROMODULIN PRECURSOR (R.norvegicus) AA997590 osteoglycin Ogn 291015 NM_001106103 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1385249_at AA866485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866485 /DB_XREF=gi:4229123 /DB_XREF=UI-R-A0-bd-e-03-0-UI.s1 /CLONE=UI-R-A0-bd-e-03-0-UI /FEA=EST /CNT=1 /TID=Rn.3018.1 /TIER=ConsEnd /STK=1 /UG=Rn.3018 /UG_TITLE=EST AA866485 1385250_at BF415132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415132 /DB_XREF=gi:11403121 /DB_XREF=UI-R-BJ2-bov-b-11-0-UI.s1 /CLONE=UI-R-BJ2-bov-b-11-0-UI /FEA=EST /CNT=1 /TID=Rn.72053.1 /TIER=ConsEnd /STK=1 /UG=Rn.72053 /UG_TITLE=EST BF415132 chromodomain helicase DNA binding protein 6 Chd6 311607 NM_001107797 0006333 // chromatin assembly or disassembly // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation 1385251_at BE115397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115397 /DB_XREF=gi:8507502 /DB_XREF=UI-R-BS1-axu-c-02-0-UI.s1 /CLONE=UI-R-BS1-axu-c-02-0-UI /FEA=EST /CNT=1 /TID=Rn.75047.1 /TIER=ConsEnd /STK=1 /UG=Rn.75047 /UG_TITLE=EST BE115397 family with sequence similarity 110, member C Fam110c 500638 NM_001025051 0000922 // spindle pole // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 1385252_at BI280655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280655 /DB_XREF=gi:14929653 /DB_XREF=UI-R-CS0s-cbf-a-04-0-UI.s1 /CLONE=UI-R-CS0s-cbf-a-04-0-UI /FEA=EST /CNT=1 /TID=Rn.78101.1 /TIER=ConsEnd /STK=1 /UG=Rn.78101 /UG_TITLE=EST BI280655 1385253_at AW529791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529791 /DB_XREF=gi:7172205 /DB_XREF=UI-R-BU0-amt-d-02-0-UI.s1 /CLONE=UI-R-BU0-amt-d-02-0-UI /FEA=EST /CNT=1 /TID=Rn.47301.1 /TIER=ConsEnd /STK=1 /UG=Rn.47301 /UG_TITLE=EST AW529791 similar to DNA segment, Chr 14, ERATO Doi 436, expressed RGD1304610 305831 NM_001107258 0000045 // autophagic vacuole assembly // not recorded /// 0006914 // autophagy // not recorded 0005776 // autophagic vacuole // not recorded /// 0034045 // pre-autophagosomal structure membrane // not recorded 0005515 // protein binding // not recorded 1385254_at BE104427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104427 /DB_XREF=gi:8496567 /DB_XREF=UI-R-BX0-asa-g-01-0-UI.s1 /CLONE=UI-R-BX0-asa-g-01-0-UI /FEA=EST /CNT=1 /TID=Rn.50637.1 /TIER=ConsEnd /STK=1 /UG=Rn.50637 /UG_TITLE=EST, Highly similar to 2211433A FRP1 protein (H.sapiens) BE104427 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1385255_at BE111066 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111066 /DB_XREF=gi:8503171 /DB_XREF=UI-R-BJ1-auz-c-05-0-UI.s1 /CLONE=UI-R-BJ1-auz-c-05-0-UI /FEA=EST /CNT=1 /TID=Rn.51958.1 /TIER=ConsEnd /STK=1 /UG=Rn.51958 /UG_TITLE=EST BE111066 integrin alpha 9 Itga9 685004 XM_001061864 /// XM_002727107 0007155 // cell adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation 0008305 // integrin complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1385256_at BE106225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106225 /DB_XREF=gi:8498327 /DB_XREF=UI-R-BO1-asl-d-12-0-UI.s1 /CLONE=UI-R-BO1-asl-d-12-0-UI /FEA=EST /CNT=1 /TID=Rn.68897.1 /TIER=ConsEnd /STK=1 /UG=Rn.68897 /UG_TITLE=EST BE106225 1385257_at AI145717 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145717 /DB_XREF=gi:3667516 /DB_XREF=UI-R-BT0-qd-f-04-0-UI.s1 /CLONE=UI-R-BT0-qd-f-04-0-UI /FEA=EST /CNT=1 /TID=Rn.28588.1 /TIER=ConsEnd /STK=1 /UG=Rn.28588 /UG_TITLE=EST AI145717 hypothetical protein LOC690206 LOC690206 690206 NM_001109567 1385258_at BF419239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419239 /DB_XREF=gi:11407228 /DB_XREF=UI-R-BJ2-bqp-c-07-0-UI.s1 /CLONE=UI-R-BJ2-bqp-c-07-0-UI /FEA=EST /CNT=1 /TID=Rn.72322.1 /TIER=ConsEnd /STK=1 /UG=Rn.72322 /UG_TITLE=EST, Weakly similar to T20203 hypothetical protein C54C8.3 - Caenorhabditis elegans (C.elegans) BF419239 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 B3gnt7 316583 NM_001012134 0006486 // protein glycosylation // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008378 // galactosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1385259_at AI112792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112792 /DB_XREF=gi:3512741 /DB_XREF=UI-R-E1-fn-f-12-0-UI.s1 /CLONE=UI-R-E1-fn-f-12-0-UI /FEA=EST /CNT=1 /TID=Rn.26844.1 /TIER=ConsEnd /STK=1 /UG=Rn.26844 /UG_TITLE=EST AI112792 ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) Ube2k 289623 NM_001106006 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0034450 // ubiquitin-ubiquitin ligase activity // not recorded 1385260_at BE103057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103057 /DB_XREF=gi:8495156 /DB_XREF=UI-R-BT1-aqw-a-02-0-UI.s1 /CLONE=UI-R-BT1-aqw-a-02-0-UI /FEA=EST /CNT=1 /TID=Rn.50467.1 /TIER=ConsEnd /STK=1 /UG=Rn.50467 /UG_TITLE=EST BE103057 1385261_s_at BE103057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103057 /DB_XREF=gi:8495156 /DB_XREF=UI-R-BT1-aqw-a-02-0-UI.s1 /CLONE=UI-R-BT1-aqw-a-02-0-UI /FEA=EST /CNT=1 /TID=Rn.50467.1 /TIER=ConsEnd /STK=1 /UG=Rn.50467 /UG_TITLE=EST BE103057 1385262_at BF387891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387891 /DB_XREF=gi:11372715 /DB_XREF=UI-R-CA1-bbw-a-01-0-UI.s1 /CLONE=UI-R-CA1-bbw-a-01-0-UI /FEA=EST /CNT=1 /TID=Rn.56625.1 /TIER=ConsEnd /STK=1 /UG=Rn.56625 /UG_TITLE=EST, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) BF387891 zinc finger protein 59 LOC100360593 100360593 XM_002728721 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385263_at BM383209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383209 /DB_XREF=gi:18183262 /DB_XREF=UI-R-DS0-cjd-j-07-0-UI.s1 /CLONE=UI-R-DS0-cjd-j-07-0-UI /FEA=EST /CNT=1 /TID=Rn.81300.1 /TIER=ConsEnd /STK=1 /UG=Rn.81300 /UG_TITLE=EST BM383209 myosin VIIb Myo7b 498834 NM_001191941 /// XM_001059493 /// XM_574117 0005856 // cytoskeleton // inferred from electronic annotation /// 0016459 // myosin complex // inferred from electronic annotation 0003774 // motor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1385264_at AA892746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892746 /DB_XREF=gi:3019625 /DB_XREF=EST196549 /CLONE=RKIAW72 /FEA=EST /CNT=1 /TID=Rn.32289.1 /TIER=ConsEnd /STK=1 /UG=Rn.32289 /UG_TITLE=EST AA892746 1385265_a_at AW528215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528215 /DB_XREF=gi:7170629 /DB_XREF=UI-R-BT1-ajw-a-07-0-UI.s1 /CLONE=UI-R-BT1-ajw-a-07-0-UI /FEA=EST /CNT=1 /TID=Rn.34509.2 /TIER=ConsEnd /STK=1 /UG=Rn.34509 /UG_TITLE=ESTs, Highly similar to T46457 hypothetical protein DKFZp434L032.1 (H.sapiens) AW528215 similar to Protein C12orf11 (Sarcoma antigen NY-SAR-95) LOC690728 690728 NM_001109608 0007346 // regulation of mitotic cell cycle // not recorded 0005515 // protein binding // not recorded 1385266_at BF404261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404261 /DB_XREF=gi:11392236 /DB_XREF=UI-R-CA1-bjd-a-15-0-UI.s1 /CLONE=UI-R-CA1-bjd-a-15-0-UI /FEA=EST /CNT=1 /TID=Rn.37331.3 /TIER=ConsEnd /STK=1 /UG=Rn.37331 /UG_TITLE=ESTs BF404261 nemo like kinase /// similar to nemo like kinase Nlk /// RGD1561440 363942 /// 497961 NM_001191924 /// XM_001061954 /// XM_001080888 /// XM_344122 /// XM_573152 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007243 // intracellular protein kinase cascade // not recorded /// 0018107 // peptidyl-threonine phosphorylation // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0033136 // serine phosphorylation of STAT3 protein // not recorded /// 0045449 // regulation of transcription // not recorded /// 0046777 // protein autophosphorylation // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004707 // MAP kinase activity // inferred from electronic annotation /// 0004707 // MAP kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0042169 // SH2 domain binding // not recorded 1385267_at AW433616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433616 /DB_XREF=gi:6964923 /DB_XREF=UI-R-BJ0p-afa-g-03-0-UI.s1 /CLONE=UI-R-BJ0p-afa-g-03-0-UI /FEA=EST /CNT=1 /TID=Rn.54257.1 /TIER=ConsEnd /STK=1 /UG=Rn.54257 /UG_TITLE=EST, Weakly similar to S16788 probable reverse transcriptase - rat (R.norvegicus) AW433616 1385268_at BI289167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289167 /DB_XREF=gi:14946464 /DB_XREF=UI-R-DK0-cfm-d-11-0-UI.s1 /CLONE=UI-R-DK0-cfm-d-11-0-UI /FEA=EST /CNT=1 /TID=Rn.79004.1 /TIER=ConsEnd /STK=1 /UG=Rn.79004 /UG_TITLE=EST BI289167 coiled-coil domain containing 93 Ccdc93 304743 NM_001024997 0016070 // RNA metabolic process // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1385269_s_at BI289167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289167 /DB_XREF=gi:14946464 /DB_XREF=UI-R-DK0-cfm-d-11-0-UI.s1 /CLONE=UI-R-DK0-cfm-d-11-0-UI /FEA=EST /CNT=1 /TID=Rn.79004.1 /TIER=ConsEnd /STK=1 /UG=Rn.79004 /UG_TITLE=EST BI289167 coiled-coil domain containing 93 Ccdc93 304743 NM_001024997 0016070 // RNA metabolic process // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1385270_s_at AI236576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236576 /DB_XREF=gi:3830082 /DB_XREF=EST233138 /CLONE=ROVDH88 /FEA=EST /CNT=1 /TID=Rn.40785.2 /TIER=ConsEnd /STK=1 /UG=Rn.40785 /UG_TITLE=ESTs, Highly similar to S06147 GTP-binding protein rab1B - rat (R.norvegicus) AI236576 RAB1B, member RAS oncogene family-like /// RAB1B, member RAS oncogene family LOC100363782 /// Rab1b 100126191 /// 100363782 NM_001109979 /// XM_002727597 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1385271_at AI763870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763870 /DB_XREF=gi:5209805 /DB_XREF=UI-R-Y0-act-a-11-0-UI.s1 /CLONE=UI-R-Y0-act-a-11-0-UI /FEA=EST /CNT=1 /TID=Rn.42121.1 /TIER=ConsEnd /STK=1 /UG=Rn.42121 /UG_TITLE=EST AI763870 1385272_at AA996768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996768 /DB_XREF=gi:4280532 /DB_XREF=UI-R-C0-hg-h-10-0-UI.s1 /CLONE=UI-R-C0-hg-h-10-0-UI /FEA=EST /CNT=1 /TID=Rn.42344.1 /TIER=ConsEnd /STK=1 /UG=Rn.42344 /UG_TITLE=EST AA996768 1385273_at AA859665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859665 /DB_XREF=gi:4230210 /DB_XREF=UI-R-E0-bs-c-09-0-UI.s1 /CLONE=UI-R-E0-bs-c-09-0-UI /FEA=EST /CNT=1 /TID=Rn.43.1 /TIER=ConsEnd /STK=1 /UG=Rn.43 /UG_TITLE=EST AA859665 1385274_at AW526381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526381 /DB_XREF=gi:7168766 /DB_XREF=UI-R-BO1-ajb-e-02-0-UI.s1 /CLONE=UI-R-BO1-ajb-e-02-0-UI /FEA=EST /CNT=1 /TID=Rn.46175.1 /TIER=ConsEnd /STK=1 /UG=Rn.46175 /UG_TITLE=EST, Weakly similar to 2123329A proto-cadherin 3 (R.norvegicus) AW526381 protocadherin beta 19 Pcdhb19 548106 XM_001056051 /// XM_001065373 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1385275_at BF391286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391286 /DB_XREF=gi:11376138 /DB_XREF=UI-R-CA1-bcv-f-03-0-UI.s1 /CLONE=UI-R-CA1-bcv-f-03-0-UI /FEA=EST /CNT=1 /TID=Rn.70343.1 /TIER=ConsEnd /STK=1 /UG=Rn.70343 /UG_TITLE=EST, Weakly similar to 1901177A wnt-2 gene (R.norvegicus) BF391286 wingless-type MMTV integration site family, member 16 Wnt16 500047 NM_001109223 0007223 // Wnt receptor signaling pathway, calcium modulating pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // not recorded /// 0043616 // keratinocyte proliferation // not recorded /// 0046330 // positive regulation of JNK cascade // not recorded /// 0060317 // cardiac epithelial to mesenchymal transition // not recorded /// 0060548 // negative regulation of cell death // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // not recorded 0004871 // signal transducer activity // inferred from electronic annotation 1385276_a_at AA818849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818849 /DB_XREF=gi:4227521 /DB_XREF=UI-R-A0-ar-g-10-0-UI.s1 /CLONE=UI-R-A0-ar-g-10-0-UI /FEA=EST /CNT=1 /TID=Rn.16550.1 /TIER=ConsEnd /STK=1 /UG=Rn.16550 /UG_TITLE=ESTs AA818849 DEXH (Asp-Glu-X-His) box polypeptide 58 Dhx58 303538 NM_001098788 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1385277_x_at AA818849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818849 /DB_XREF=gi:4227521 /DB_XREF=UI-R-A0-ar-g-10-0-UI.s1 /CLONE=UI-R-A0-ar-g-10-0-UI /FEA=EST /CNT=1 /TID=Rn.16550.1 /TIER=ConsEnd /STK=1 /UG=Rn.16550 /UG_TITLE=ESTs AA818849 DEXH (Asp-Glu-X-His) box polypeptide 58 Dhx58 303538 NM_001098788 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1385278_at AI072041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072041 /DB_XREF=gi:3398235 /DB_XREF=UI-R-C2-nd-g-06-0-UI.s1 /CLONE=UI-R-C2-nd-g-06-0-UI /FEA=EST /CNT=1 /TID=Rn.20701.1 /TIER=ConsEnd /STK=1 /UG=Rn.20701 /UG_TITLE=EST AI072041 1385279_at AA866259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866259 /DB_XREF=gi:4229146 /DB_XREF=UI-R-A0-bd-g-12-0-UI.s1 /CLONE=UI-R-A0-bd-g-12-0-UI /FEA=EST /CNT=1 /TID=Rn.3026.1 /TIER=ConsEnd /STK=1 /UG=Rn.3026 /UG_TITLE=EST AA866259 1385280_at AW523198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523198 /DB_XREF=gi:7165583 /DB_XREF=UI-R-BO0-ahs-e-01-0-UI.s1 /CLONE=UI-R-BO0-ahs-e-01-0-UI /FEA=EST /CNT=1 /TID=Rn.45584.1 /TIER=ConsEnd /STK=1 /UG=Rn.45584 /UG_TITLE=EST AW523198 1385281_at BF388412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388412 /DB_XREF=gi:11373236 /DB_XREF=UI-R-BS2-bdc-b-10-0-UI.s1 /CLONE=UI-R-BS2-bdc-b-10-0-UI /FEA=EST /CNT=1 /TID=Rn.56748.1 /TIER=ConsEnd /STK=1 /UG=Rn.56748 /UG_TITLE=EST BF388412 1385282_at BE097029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097029 /DB_XREF=gi:8487960 /DB_XREF=UI-R-BO1-apw-b-09-0-UI.s1 /CLONE=UI-R-BO1-apw-b-09-0-UI /FEA=EST /CNT=1 /TID=Rn.68344.1 /TIER=ConsEnd /STK=1 /UG=Rn.68344 /UG_TITLE=EST, Moderately similar to JC7320 K562 cell-derived leucine-zipper-like protein 1 (H.sapiens) BE097029 N-acetyltransferase 14 Nat14 361500 NM_001108466 0008152 // metabolic process // inferred from electronic annotation 0008080 // N-acetyltransferase activity // inferred from electronic annotation 1385283_at BE097537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097537 /DB_XREF=gi:8488468 /DB_XREF=UI-R-BO1-apy-g-01-0-UI.s1 /CLONE=UI-R-BO1-apy-g-01-0-UI /FEA=EST /CNT=1 /TID=Rn.68404.1 /TIER=ConsEnd /STK=1 /UG=Rn.68404 /UG_TITLE=EST, Highly similar to PEX5 MOUSE PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR (M.musculus) BE097537 peroxisomal biogenesis factor 5 Pex5 312703 NM_001170584 /// XM_001062081 /// XM_232343 0000038 // very long-chain fatty acid metabolic process // inferred from electronic annotation /// 0000038 // very long-chain fatty acid metabolic process // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0006625 // protein targeting to peroxisome // inferred from electronic annotation /// 0006625 // protein targeting to peroxisome // not recorded /// 0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007006 // mitochondrial membrane organization // inferred from electronic annotation /// 0007006 // mitochondrial membrane organization // not recorded /// 0007029 // endoplasmic reticulum organization // inferred from electronic annotation /// 0007029 // endoplasmic reticulum organization // not recorded /// 0007031 // peroxisome organization // not recorded /// 0007031 // peroxisome organization // inferred from electronic annotation /// 0008299 // isoprenoid biosynthetic process // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016561 // protein import into peroxisome matrix, translocation // inferred from electronic annotation /// 0016561 // protein import into peroxisome matrix, translocation // not recorded /// 0021795 // cerebral cortex cell migration // inferred from electronic annotation /// 0021795 // cerebral cortex cell migration // not recorded /// 0021895 // cerebral cortex neuron differentiation // inferred from electronic annotation /// 0021895 // cerebral cortex neuron differentiation // not recorded /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0044255 // cellular lipid metabolic process // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // not recorded /// 0048468 // cell development // inferred from electronic annotation /// 0048468 // cell development // not recorded /// 0050905 // neuromuscular process // inferred from electronic annotation /// 0050905 // neuromuscular process // not recorded /// 0051262 // protein tetramerization // inferred from electronic annotation /// 0051262 // protein tetramerization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // not recorded /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0005782 // peroxisomal matrix // inferred from electronic annotation /// 0005782 // peroxisomal matrix // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0005052 // peroxisome matrix targeting signal-1 binding // inferred from electronic annotation /// 0005052 // peroxisome matrix targeting signal-1 binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1385284_at AI577488 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577488 /DB_XREF=gi:4561864 /DB_XREF=UI-R-Y0-vj-d-10-0-UI.s1 /CLONE=UI-R-Y0-vj-d-10-0-UI /FEA=EST /CNT=1 /TID=Rn.37925.1 /TIER=ConsEnd /STK=1 /UG=Rn.37925 /UG_TITLE=EST AI577488 1385285_at AI145977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145977 /DB_XREF=gi:3667776 /DB_XREF=UI-R-BT0-qc-g-06-0-UI.s1 /CLONE=UI-R-BT0-qc-g-06-0-UI /FEA=EST /CNT=1 /TID=Rn.28689.1 /TIER=ConsEnd /STK=1 /UG=Rn.28689 /UG_TITLE=EST AI145977 1385286_at BI292438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292438 /DB_XREF=gi:14952933 /DB_XREF=UI-R-DN0-civ-j-04-0-UI.s1 /CLONE=UI-R-DN0-civ-j-04-0-UI /FEA=EST /CNT=1 /TID=Rn.79322.1 /TIER=ConsEnd /STK=1 /UG=Rn.79322 /UG_TITLE=EST BI292438 elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3 Elovl3 309449 NM_001107602 0016021 // integral to membrane // inferred from electronic annotation 1385287_at AI069951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI069951 /DB_XREF=gi:3396202 /DB_XREF=UI-R-C1-lo-f-07-0-UI.s1 /CLONE=UI-R-C1-lo-f-07-0-UI /FEA=EST /CNT=1 /TID=Rn.21229.1 /TIER=ConsEnd /STK=1 /UG=Rn.21229 /UG_TITLE=EST AI069951 1385288_at BE120677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120677 /DB_XREF=gi:8512782 /DB_XREF=UI-R-CA0-bay-c-06-0-UI.s1 /CLONE=UI-R-CA0-bay-c-06-0-UI /FEA=EST /CNT=1 /TID=Rn.53634.1 /TIER=ConsEnd /STK=1 /UG=Rn.53634 /UG_TITLE=EST BE120677 hypothetical LOC298398 RGD1310425 298398 NM_001013934 1385289_at AW528303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528303 /DB_XREF=gi:7170717 /DB_XREF=UI-R-BT1-ajw-h-11-0-UI.s1 /CLONE=UI-R-BT1-ajw-h-11-0-UI /FEA=EST /CNT=1 /TID=Rn.46826.1 /TIER=ConsEnd /STK=1 /UG=Rn.46826 /UG_TITLE=EST AW528303 1385290_at BE119379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119379 /DB_XREF=gi:8511484 /DB_XREF=UI-R-CA0-bah-h-02-0-UI.s1 /CLONE=UI-R-CA0-bah-h-02-0-UI /FEA=EST /CNT=1 /TID=Rn.69601.1 /TIER=ConsEnd /STK=1 /UG=Rn.69601 /UG_TITLE=EST BE119379 transmembrane and coiled-coil domains 5A Tmco5a 499865 XM_002726157 /// XM_575207 1385291_a_at BI303187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303187 /DB_XREF=gi:14979467 /DB_XREF=UI-R-DQ0-ciz-g-24-0-UI.s1 /CLONE=UI-R-DQ0-ciz-g-24-0-UI /FEA=EST /CNT=1 /TID=Rn.77433.2 /TIER=ConsEnd /STK=1 /UG=Rn.77433 /UG_TITLE=ESTs, Highly similar to SYNAPTONEMAL COMPLEX PROTEIN SC65 (R.norvegicus) BI303187 synaptonemal complex protein SC65 Sc65 59101 NM_021581 0000795 // synaptonemal complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1385292_at BI303187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303187 /DB_XREF=gi:14979467 /DB_XREF=UI-R-DQ0-ciz-g-24-0-UI.s1 /CLONE=UI-R-DQ0-ciz-g-24-0-UI /FEA=EST /CNT=1 /TID=Rn.77433.2 /TIER=ConsEnd /STK=1 /UG=Rn.77433 /UG_TITLE=ESTs, Highly similar to SYNAPTONEMAL COMPLEX PROTEIN SC65 (R.norvegicus) BI303187 Synaptonemal complex protein SC65 Sc65 59101 NM_021581 0000795 // synaptonemal complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1385293_at BI278049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278049 /DB_XREF=gi:14924517 /DB_XREF=UI-R-CZ0-byc-f-12-0-UI.s1 /CLONE=UI-R-CZ0-byc-f-12-0-UI /FEA=EST /CNT=1 /TID=Rn.77730.1 /TIER=ConsEnd /STK=1 /UG=Rn.77730 /UG_TITLE=EST BI278049 family with sequence similarity 54, member B Fam54b 298549 NM_001013935 1385294_at BM387000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387000 /DB_XREF=gi:18187053 /DB_XREF=UI-R-CN1-cji-k-09-0-UI.s1 /CLONE=UI-R-CN1-cji-k-09-0-UI /FEA=EST /CNT=1 /TID=Rn.81420.1 /TIER=ConsEnd /STK=1 /UG=Rn.81420 /UG_TITLE=ESTs BM387000 ets variant 6 Etv6 312777 NM_001037353 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1385295_at AI144607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144607 /DB_XREF=gi:3666406 /DB_XREF=UI-R-BT0-pn-h-03-0-UI.s1 /CLONE=UI-R-BT0-pn-h-03-0-UI /FEA=EST /CNT=1 /TID=Rn.27618.1 /TIER=ConsEnd /STK=1 /UG=Rn.27618 /UG_TITLE=EST AI144607 1385296_at AA963783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963783 /DB_XREF=gi:4278725 /DB_XREF=UI-R-E1-gk-f-09-0-UI.s1 /CLONE=UI-R-E1-gk-f-09-0-UI /FEA=EST /CNT=1 /TID=Rn.32968.1 /TIER=ConsEnd /STK=1 /UG=Rn.32968 /UG_TITLE=EST AA963783 tRNA methyltransferase 12 homolog (S. cerevisiae) Trmt12 314999 NM_001122976 0008033 // tRNA processing // inferred from electronic annotation 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1385297_at BG371522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371522 /DB_XREF=gi:13268059 /DB_XREF=UI-R-CW0-bvw-d-05-0-UI.s1 /CLONE=UI-R-CW0-bvw-d-05-0-UI /FEA=EST /CNT=1 /TID=Rn.73395.1 /TIER=ConsEnd /STK=1 /UG=Rn.73395 /UG_TITLE=EST BG371522 RecQ protein-like 4 Recql4 300057 NM_001130494 0000733 // DNA strand renaturation // not recorded /// 0001501 // skeletal system development // not recorded /// 0006310 // DNA recombination // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0032508 // DNA duplex unwinding // not recorded /// 0043473 // pigmentation // not recorded /// 0045875 // negative regulation of sister chromatid cohesion // not recorded /// 0048705 // skeletal system morphogenesis // not recorded 0000405 // bubble DNA binding // not recorded /// 0000739 // DNA strand annealing activity // not recorded /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0043140 // ATP-dependent 3'-5' DNA helicase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1385298_at AI555358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555358 /DB_XREF=gi:4487721 /DB_XREF=UI-R-C2p-qw-h-04-0-UI.s1 /CLONE=UI-R-C2p-qw-h-04-0-UI /FEA=EST /CNT=1 /TID=Rn.73969.1 /TIER=ConsEnd /STK=1 /UG=Rn.73969 /UG_TITLE=EST AI555358 solute carrier family 26, member 10 Slc26a10 366909 NM_001134595 0006810 // transport // inferred from electronic annotation /// 0008272 // sulfate transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0008271 // secondary active sulfate transmembrane transporter activity // inferred from electronic annotation 1385299_at BI294122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294122 /DB_XREF=gi:14956277 /DB_XREF=UI-R-DK0-cej-f-09-0-UI.s1 /CLONE=UI-R-DK0-cej-f-09-0-UI /FEA=EST /CNT=1 /TID=Rn.79526.1 /TIER=ConsEnd /STK=1 /UG=Rn.79526 /UG_TITLE=EST BI294122 lysophosphatidic acid receptor 4 Lpar4 302378 NM_001106940 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0045028 // purinergic nucleotide receptor activity, G-protein coupled // inferred from electronic annotation 1385300_at BE107758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107758 /DB_XREF=gi:8499863 /DB_XREF=UI-R-CA0-aww-e-11-0-UI.s1 /CLONE=UI-R-CA0-aww-e-11-0-UI /FEA=EST /CNT=1 /TID=Rn.51273.1 /TIER=ConsEnd /STK=1 /UG=Rn.51273 /UG_TITLE=EST, Weakly similar to MIPP MOUSE MIPP PROTEIN (M.musculus) BE107758 kelch-like 10 (Drosophila) Klhl10 303533 NM_001001510 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0007286 // spermatid development // inferred from electronic annotation /// 0007286 // spermatid development // not recorded /// 0008584 // male gonad development // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0009566 // fertilization // inferred from electronic annotation /// 0009566 // fertilization // not recorded /// 0048808 // male genitalia morphogenesis // inferred from electronic annotation /// 0048808 // male genitalia morphogenesis // not recorded /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation 1385301_at BG378711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378711 /DB_XREF=gi:13303183 /DB_XREF=UI-R-BT1-bnj-h-12-0-UI.s1 /CLONE=UI-R-BT1-bnj-h-12-0-UI /FEA=EST /CNT=1 /TID=Rn.73230.1 /TIER=ConsEnd /STK=1 /UG=Rn.73230 /UG_TITLE=EST BG378711 1385302_at AW528213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528213 /DB_XREF=gi:7170627 /DB_XREF=UI-R-BT1-ajw-a-04-0-UI.s1 /CLONE=UI-R-BT1-ajw-a-04-0-UI /FEA=EST /CNT=1 /TID=Rn.74526.1 /TIER=ConsEnd /STK=1 /UG=Rn.74526 /UG_TITLE=EST AW528213 glycerophosphodiester phosphodiesterase domain containing 1 Gdpd1 303407 NM_001044238 0006071 // glycerol metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0008889 // glycerophosphodiester phosphodiesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385303_at BI301855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301855 /DB_XREF=gi:14978135 /DB_XREF=UI-R-DL0-cin-p-08-0-UI.s1 /CLONE=UI-R-DL0-cin-p-08-0-UI /FEA=EST /CNT=1 /TID=Rn.77149.1 /TIER=ConsEnd /STK=1 /UG=Rn.77149 /UG_TITLE=EST, Weakly similar to S21348 probable pol polyprotein-related protein 4 - rat (R.norvegicus) BI301855 1385304_at BI278030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278030 /DB_XREF=gi:14924481 /DB_XREF=UI-R-CZ0-byc-d-12-0-UI.s1 /CLONE=UI-R-CZ0-byc-d-12-0-UI /FEA=EST /CNT=1 /TID=Rn.77721.1 /TIER=ConsEnd /STK=1 /UG=Rn.77721 /UG_TITLE=EST BI278030 1385305_at BI278291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278291 /DB_XREF=gi:14924992 /DB_XREF=UI-R-CY0-bxr-g-02-0-UI.s1 /CLONE=UI-R-CY0-bxr-g-02-0-UI /FEA=EST /CNT=1 /TID=Rn.77772.1 /TIER=ConsEnd /STK=1 /UG=Rn.77772 /UG_TITLE=EST BI278291 1385306_at BI288042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288042 /DB_XREF=gi:14944236 /DB_XREF=UI-R-DC0-cay-b-06-0-UI.s2 /CLONE=UI-R-DC0-cay-b-06-0-UI /FEA=EST /CNT=1 /TID=Rn.78844.1 /TIER=ConsEnd /STK=1 /UG=Rn.78844 /UG_TITLE=EST BI288042 similar to BRCA1-associated protein (BRAP2) (Impedes mitogenic signal propagation) (IMP) LOC687346 687346 XM_001075972 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1385307_at BI289808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289808 /DB_XREF=gi:14947767 /DB_XREF=UI-R-DK0-cfo-e-02-0-UI.s1 /CLONE=UI-R-DK0-cfo-e-02-0-UI /FEA=EST /CNT=1 /TID=Rn.79080.1 /TIER=ConsEnd /STK=1 /UG=Rn.79080 /UG_TITLE=EST BI289808 1385308_at BI291282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291282 /DB_XREF=gi:14950674 /DB_XREF=UI-R-CV2-cgn-g-04-0-UI.s1 /CLONE=UI-R-CV2-cgn-g-04-0-UI /FEA=EST /CNT=1 /TID=Rn.79245.1 /TIER=ConsEnd /STK=1 /UG=Rn.79245 /UG_TITLE=EST, Weakly similar to F59A1.10.p (Caenorhabditis elegans) (C.elegans) BI291282 monoacylglycerol O-acyltransferase 1 Mogat1 363261 NM_001108803 0006651 // diacylglycerol biosynthetic process // not recorded 0005624 // membrane fraction // not recorded /// 0005783 // endoplasmic reticulum // not recorded 0003846 // 2-acylglycerol O-acyltransferase activity // not recorded /// 0004144 // diacylglycerol O-acyltransferase activity // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation 1385309_at BI294084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294084 /DB_XREF=gi:14956202 /DB_XREF=UI-R-DK0-cej-c-04-0-UI.s1 /CLONE=UI-R-DK0-cej-c-04-0-UI /FEA=EST /CNT=1 /TID=Rn.79520.1 /TIER=ConsEnd /STK=1 /UG=Rn.79520 /UG_TITLE=EST, Weakly similar to SY02 MOUSE SMALL INDUCIBLE CYTOKINE A2 PRECURSOR (M.musculus) BI294084 chemokine (C-C motif) ligand 24 Ccl24 288593 NM_001013045 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0006935 // chemotaxis // not recorded /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // not recorded /// 0030838 // positive regulation of actin filament polymerization // inferred from electronic annotation /// 0032855 // positive regulation of Rac GTPase activity // not recorded /// 0032855 // positive regulation of Rac GTPase activity // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // not recorded /// 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annotation 1385310_at BI295907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295907 /DB_XREF=gi:14959822 /DB_XREF=UI-R-DK0-cfc-b-07-0-UI.s1 /CLONE=UI-R-DK0-cfc-b-07-0-UI /FEA=EST /CNT=1 /TID=Rn.79771.1 /TIER=ConsEnd /STK=1 /UG=Rn.79771 /UG_TITLE=EST BI295907 1385311_at BI274649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274649 /DB_XREF=gi:14885757 /DB_XREF=UI-R-CX0-bws-d-05-0-UI.s1 /CLONE=UI-R-CX0-bws-d-05-0-UI /FEA=EST /CNT=1 /TID=Rn.79988.1 /TIER=ConsEnd /STK=1 /UG=Rn.79988 /UG_TITLE=EST, Weakly similar to PROSTAGLANDIN TRANSPORTER (R.norvegicus) BI274649 solute carrier organic anion transporter family, member 5A1 Slco5a1 312907 NM_001107898 0006810 // transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1385312_at AA875209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875209 /DB_XREF=gi:4231088 /DB_XREF=UI-R-E0-cu-f-07-0-UI.s1 /CLONE=UI-R-E0-cu-f-07-0-UI /FEA=EST /CNT=1 /TID=Rn.81041.1 /TIER=ConsEnd /STK=1 /UG=Rn.81041 /UG_TITLE=EST AA875209 1385313_at BF386923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386923 /DB_XREF=gi:11371747 /DB_XREF=UI-R-CA1-bbj-b-08-0-UI.s1 /CLONE=UI-R-CA1-bbj-b-08-0-UI /FEA=EST /CNT=1 /TID=Rn.56378.1 /TIER=ConsEnd /STK=1 /UG=Rn.56378 /UG_TITLE=EST BF386923 pogo transposable element with KRAB domain Pogk 304941 NM_001107194 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation 1385314_at AA923974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA923974 /DB_XREF=gi:4234066 /DB_XREF=UI-R-A1-dq-e-10-0-UI.s1 /CLONE=UI-R-A1-dq-e-10-0-UI /FEA=EST /CNT=1 /TID=Rn.5837.3 /TIER=ConsEnd /STK=1 /UG=Rn.5837 /UG_TITLE=ESTs AA923974 1385315_at AI145941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145941 /DB_XREF=gi:3667740 /DB_XREF=UI-R-BT0-qc-c-07-0-UI.s1 /CLONE=UI-R-BT0-qc-c-07-0-UI /FEA=EST /CNT=1 /TID=Rn.28675.1 /TIER=ConsEnd /STK=1 /UG=Rn.28675 /UG_TITLE=EST AI145941 metastasis suppressor 1-like Mtss1l 307845 NM_001191558 /// XM_001077379 /// XM_002728615 /// XM_226503 0007165 // signal transduction // inferred from electronic annotation /// 0046847 // filopodium assembly // inferred from electronic annotation 0008093 // cytoskeletal adaptor activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation 1385316_at BF386882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386882 /DB_XREF=gi:11371711 /DB_XREF=UI-R-CA1-bbo-g-03-0-UI.s1 /CLONE=UI-R-CA1-bbo-g-03-0-UI /FEA=EST /CNT=1 /TID=Rn.56373.1 /TIER=ConsEnd /STK=1 /UG=Rn.56373 /UG_TITLE=EST BF386882 poliovirus receptor-related 3 Pvrl3 288124 NM_001105883 0002089 // lens morphogenesis in camera-type eye // not recorded /// 0007155 // cell adhesion // not recorded /// 0007156 // homophilic cell adhesion // not recorded /// 0009566 // fertilization // not recorded /// 0016337 // cell-cell adhesion // not recorded /// 0060042 // retina morphogenesis in camera-type eye // not recorded 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // not recorded /// 0005913 // cell-cell adherens junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043296 // apical junction complex // not recorded 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0050839 // cell adhesion molecule binding // not recorded 1385317_s_at BF392357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392357 /DB_XREF=gi:11377214 /DB_XREF=UI-R-CA0-bfi-b-11-0-UI.s1 /CLONE=UI-R-CA0-bfi-b-11-0-UI /FEA=EST /CNT=1 /TID=Rn.66089.1 /TIER=ConsEnd /STK=1 /UG=Rn.66089 /UG_TITLE=EST BF392357 zinc finger protein 112 Zfp112 308420 NM_001107487 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385318_at AW528193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528193 /DB_XREF=gi:7170607 /DB_XREF=UI-R-BO1-ajn-g-07-0-UI.s1 /CLONE=UI-R-BO1-ajn-g-07-0-UI /FEA=EST /CNT=1 /TID=Rn.67904.1 /TIER=ConsEnd /STK=1 /UG=Rn.67904 /UG_TITLE=EST, Weakly similar to T00743 glutamyl tRNA synthetase homolog (H.sapiens) AW528193 glutamyl-tRNA synthetase 2 mitochondrial (putative) Ears2 361641 NM_001159493 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006424 // glutamyl-tRNA aminoacylation // inferred from electronic annotation /// 0043039 // tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004818 // glutamate-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016876 // ligase activity, forming aminoacyl-tRNA and related compounds // inferred from electronic annotation 1385319_at BE108386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108386 /DB_XREF=gi:8500491 /DB_XREF=UI-R-BS1-ayv-f-10-0-UI.s1 /CLONE=UI-R-BS1-ayv-f-10-0-UI /FEA=EST /CNT=1 /TID=Rn.69092.1 /TIER=ConsEnd /STK=1 /UG=Rn.69092 /UG_TITLE=EST BE108386 Rho GTPase activating protein 27 Arhgap27 303583 NM_198759 0006897 // endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0043089 // positive regulation of Cdc42 GTPase activity // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // inferred from mutant phenotype /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from direct assay /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017124 // SH3 domain binding // inferred from direct assay /// 0030675 // Rac GTPase activator activity // inferred from direct assay 1385320_at AI072232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072232 /DB_XREF=gi:3398426 /DB_XREF=UI-R-C2-mu-d-06-0-UI.s1 /CLONE=UI-R-C2-mu-d-06-0-UI /FEA=EST /CNT=1 /TID=Rn.20097.1 /TIER=ConsEnd /STK=1 /UG=Rn.20097 /UG_TITLE=EST AI072232 MAGI family member, X-linked Magix 317379 NM_001014109 0005515 // protein binding // inferred from electronic annotation 1385321_at AW532713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532713 /DB_XREF=gi:7175127 /DB_XREF=UI-R-BS0-amq-c-09-0-UI.s1 /CLONE=UI-R-BS0-amq-c-09-0-UI /FEA=EST /CNT=1 /TID=Rn.47996.1 /TIER=ConsEnd /STK=1 /UG=Rn.47996 /UG_TITLE=EST AW532713 Similar to Protein arginine N-methyltransferase 4 (Heterogeneous nuclear ribonucleoprotein methyltransferase-like protein 4) LOC688502 688502 XM_001071456 /// XM_002726433 0016571 // histone methylation // not recorded /// 0018216 // peptidyl-arginine methylation // not recorded /// 0019919 // peptidyl-arginine methylation, to asymmetrical-dimethyl arginine // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // not recorded /// 0008276 // protein methyltransferase activity // inferred from electronic annotation /// 0008469 // histone-arginine N-methyltransferase activity // not recorded /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // not recorded /// 0035241 // protein-arginine omega-N monomethyltransferase activity // not recorded /// 0035242 // protein-arginine omega-N asymmetric methyltransferase activity // not recorded /// 0042802 // identical protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1385322_at AI602154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602154 /DB_XREF=gi:4611315 /DB_XREF=UI-R-Y0-vb-h-05-0-UI.s2 /CLONE=UI-R-Y0-vb-h-05-0-UI /FEA=EST /CNT=1 /TID=Rn.40150.1 /TIER=ConsEnd /STK=1 /UG=Rn.40150 /UG_TITLE=EST AI602154 1385323_at AW532389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532389 /DB_XREF=gi:7174803 /DB_XREF=UI-R-BT1-akc-h-02-0-UI.s1 /CLONE=UI-R-BT1-akc-h-02-0-UI /FEA=EST /CNT=1 /TID=Rn.47948.1 /TIER=ConsEnd /STK=1 /UG=Rn.47948 /UG_TITLE=EST AW532389 1385324_x_at AI548974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548974 /DB_XREF=gi:4466462 /DB_XREF=UI-R-C3-tv-a-02-0-UI.s1 /CLONE=UI-R-C3-tv-a-02-0-UI /FEA=EST /CNT=1 /TID=Rn.67571.1 /TIER=ConsEnd /STK=1 /UG=Rn.67571 /UG_TITLE=EST, Weakly similar to A48830 probable transcription regulator NT fin12 - mouse (M.musculus) AI548974 similar to BC021442 protein RGD1561413 500585 XM_001074820 /// XM_575954 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1385325_at BM389545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389545 /DB_XREF=gi:18189598 /DB_XREF=UI-R-CN1-cjn-f-18-0-UI.s1 /CLONE=UI-R-CN1-cjn-f-18-0-UI /FEA=EST /CNT=1 /TID=Rn.82263.1 /TIER=ConsEnd /STK=1 /UG=Rn.82263 /UG_TITLE=EST BM389545 syntrophin, gamma 2 Sntg2 298936 NM_001106720 0005515 // protein binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // not recorded 1385326_at BI275550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275550 /DB_XREF=gi:14919571 /DB_XREF=UI-R-CX0-bwy-f-08-0-UI.s1 /CLONE=UI-R-CX0-bwy-f-08-0-UI /FEA=EST /CNT=1 /TID=Rn.77490.1 /TIER=ConsEnd /STK=1 /UG=Rn.77490 /UG_TITLE=EST, Moderately similar to RL29 RAT 60S RIBOSOMAL PROTEIN L29 (R.norvegicus) BI275550 hypothetical LOC305052 LOC305052 305052 XR_007001 /// XR_008366 1385327_at AW522979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522979 /DB_XREF=gi:7165364 /DB_XREF=UI-R-BO0-ahp-h-09-0-UI.s1 /CLONE=UI-R-BO0-ahp-h-09-0-UI /FEA=EST /CNT=1 /TID=Rn.45529.1 /TIER=ConsEnd /STK=1 /UG=Rn.45529 /UG_TITLE=EST, Weakly similar to 2123329A proto-cadherin 3 (R.norvegicus) AW522979 protocadherin beta 13 Pcdhb13 307489 XM_001055698 /// XM_001065031 0007156 // homophilic cell adhesion // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1385328_at AA957612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957612 /DB_XREF=gi:4277502 /DB_XREF=UI-R-E1-gb-c-09-0-UI.s1 /CLONE=UI-R-E1-gb-c-09-0-UI /FEA=EST /CNT=1 /TID=Rn.9336.1 /TIER=ConsEnd /STK=1 /UG=Rn.9336 /UG_TITLE=EST AA957612 1385329_at BF401322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401322 /DB_XREF=gi:11389297 /DB_XREF=UI-R-CA0-bgs-d-01-0-UI.s1 /CLONE=UI-R-CA0-bgs-d-01-0-UI /FEA=EST /CNT=1 /TID=Rn.64436.1 /TIER=ConsEnd /STK=1 /UG=Rn.64436 /UG_TITLE=EST, Moderately similar to T46393 hypothetical protein DKFZp434H1720.1 (H.sapiens) BF401322 cytidine and dCMP deaminase domain containing 1 Cdadc1 361052 NM_001012156 0003824 // catalytic activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1385330_x_at AI178258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178258 /DB_XREF=gi:3728896 /DB_XREF=EST221923 /CLONE=RPLCO18 /FEA=EST /CNT=1 /TID=Rn.33615.2 /TIER=ConsEnd /STK=1 /UG=Rn.33615 /UG_TITLE=ESTs AI178258 1385331_at AA819842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819842 /DB_XREF=gi:4228097 /DB_XREF=UI-R-A0-ap-b-10-0-UI.s1 /CLONE=UI-R-A0-ap-b-10-0-UI /FEA=EST /CNT=1 /TID=Rn.42812.1 /TIER=ConsEnd /STK=1 /UG=Rn.42812 /UG_TITLE=EST AA819842 similar to hypothetical protein MGC45441 RGD1562911 500534 NM_001134626 1385332_at BF409229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409229 /DB_XREF=gi:11397204 /DB_XREF=UI-R-BT1-bkn-e-09-0-UI.s1 /CLONE=UI-R-BT1-bkn-e-09-0-UI /FEA=EST /CNT=1 /TID=Rn.61287.1 /TIER=ConsEnd /STK=1 /UG=Rn.61287 /UG_TITLE=EST BF409229 dihydrouridine synthase 4-like (S. cerevisiae) Dus4l 366593 NM_001135803 0008033 // tRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0017150 // tRNA dihydrouridine synthase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1385333_at AA925717 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925717 /DB_XREF=gi:4236908 /DB_XREF=UI-R-A1-ec-e-06-0-UI.s1 /CLONE=UI-R-A1-ec-e-06-0-UI /FEA=EST /CNT=1 /TID=Rn.73489.1 /TIER=ConsEnd /STK=1 /UG=Rn.73489 /UG_TITLE=EST AA925717 apoptosis-associated tyrosine kinase Aatk 690853 NM_001168703 0006915 // apoptosis // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1385334_at AA818166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818166 /DB_XREF=gi:4198679 /DB_XREF=UI-R-A0-am-c-12-0-UI.s1 /CLONE=UI-R-A0-am-c-12-0-UI /FEA=EST /CNT=1 /TID=Rn.16471.1 /TIER=ConsEnd /STK=1 /UG=Rn.16471 /UG_TITLE=EST AA818166 1385335_at BF415953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415953 /DB_XREF=gi:11403942 /DB_XREF=UI-R-CA0-bkp-c-10-0-UI.s1 /CLONE=UI-R-CA0-bkp-c-10-0-UI /FEA=EST /CNT=1 /TID=Rn.62882.1 /TIER=ConsEnd /STK=1 /UG=Rn.62882 /UG_TITLE=EST BF415953 tripartite motif-containing 39 Trim39 309591 NM_213562 0000160 // two-component signal transduction system (phosphorelay) // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1385336_at BF397977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397977 /DB_XREF=gi:11382962 /DB_XREF=UI-R-BS2-bef-h-06-0-UI.s1 /CLONE=UI-R-BS2-bef-h-06-0-UI /FEA=EST /CNT=1 /TID=Rn.58944.1 /TIER=ConsEnd /STK=1 /UG=Rn.58944 /UG_TITLE=EST BF397977 docking protein 2 Dok2 290361 NM_001106048 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007265 // Ras protein signal transduction // not recorded 0005066 // transmembrane receptor protein tyrosine kinase signaling protein activity // not recorded /// 0005068 // transmembrane receptor protein tyrosine kinase adaptor protein activity // not recorded /// 0005158 // insulin receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1385337_at AA875406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875406 /DB_XREF=gi:4231287 /DB_XREF=UI-R-E0-cs-a-10-0-UI.s1 /CLONE=UI-R-E0-cs-a-10-0-UI /FEA=EST /CNT=1 /TID=Rn.2907.3 /TIER=ConsEnd /STK=1 /UG=Rn.2907 /UG_TITLE=ESTs, Weakly similar to S21348 probable pol polyprotein-related protein 4 - rat (R.norvegicus) AA875406 1385338_at BM387792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387792 /DB_XREF=gi:18187845 /DB_XREF=UI-R-CN1-cjk-i-04-0-UI.s1 /CLONE=UI-R-CN1-cjk-i-04-0-UI /FEA=EST /CNT=1 /TID=Rn.82081.1 /TIER=ConsEnd /STK=1 /UG=Rn.82081 /UG_TITLE=EST BM387792 vomeronasal 2, receptor 42-like /// zinc finger protein 758 LOC100364003 /// Zfp758 100364003 /// 690559 XM_001074805 /// XM_002725479 /// XM_002725480 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1385339_at BI304211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI304211 /DB_XREF=gi:14980491 /DB_XREF=UI-R-DR0-cjc-p-02-0-UI.s1 /CLONE=UI-R-DR0-cjc-p-02-0-UI /FEA=EST /CNT=1 /TID=Rn.77486.1 /TIER=ConsEnd /STK=1 /UG=Rn.77486 /UG_TITLE=EST BI304211 1385340_at BG372105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372105 /DB_XREF=gi:13268642 /DB_XREF=UI-R-CV0-brm-d-07-0-UI.s1 /CLONE=UI-R-CV0-brm-d-07-0-UI /FEA=EST /CNT=1 /TID=Rn.66892.1 /TIER=ConsEnd /STK=1 /UG=Rn.66892 /UG_TITLE=EST BG372105 1385341_at BE102118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102118 /DB_XREF=gi:8494217 /DB_XREF=UI-R-BT1-aqj-e-11-0-UI.s1 /CLONE=UI-R-BT1-aqj-e-11-0-UI /FEA=EST /CNT=1 /TID=Rn.68598.1 /TIER=ConsEnd /STK=1 /UG=Rn.68598 /UG_TITLE=EST BE102118 germ cell associated 1 Gsg1 312793 NM_001013166 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0070063 // RNA polymerase binding // not recorded 1385342_at AA998932 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998932 /DB_XREF=gi:4292864 /DB_XREF=UI-R-C0-im-f-04-0-UI.s1 /CLONE=UI-R-C0-im-f-04-0-UI /FEA=EST /CNT=1 /TID=Rn.13221.1 /TIER=ConsEnd /STK=1 /UG=Rn.13221 /UG_TITLE=ESTs AA998932 TWIST neighbor Twistnb 362728 NM_001108707 0006350 // transcription // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation 1385343_at AW523620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523620 /DB_XREF=gi:7166005 /DB_XREF=UI-R-BO0-aic-b-08-0-UI.s1 /CLONE=UI-R-BO0-aic-b-08-0-UI /FEA=EST /CNT=1 /TID=Rn.45689.1 /TIER=ConsEnd /STK=1 /UG=Rn.45689 /UG_TITLE=ESTs, Moderately similar to AD22_MOUSE ADAM 22 PRECURSOR (A DISINTEGRIN AND METALLOPROTEINASE DOMAIN 22) (M.musculus) AW523620 1385344_at AW526794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526794 /DB_XREF=gi:7169208 /DB_XREF=UI-R-BO1-aje-b-03-0-UI.s1 /CLONE=UI-R-BO1-aje-b-03-0-UI /FEA=EST /CNT=1 /TID=Rn.46325.1 /TIER=ConsEnd /STK=1 /UG=Rn.46325 /UG_TITLE=EST AW526794 1385345_at BE099947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099947 /DB_XREF=gi:8491831 /DB_XREF=UI-R-BJ1-atr-a-03-0-UI.s1 /CLONE=UI-R-BJ1-atr-a-03-0-UI /FEA=EST /CNT=1 /TID=Rn.49923.1 /TIER=ConsEnd /STK=1 /UG=Rn.49923 /UG_TITLE=EST BE099947 1385346_at BE103347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103347 /DB_XREF=gi:8495446 /DB_XREF=UI-R-BX0-aqz-g-01-0-UI.s1 /CLONE=UI-R-BX0-aqz-g-01-0-UI /FEA=EST /CNT=1 /TID=Rn.50510.1 /TIER=ConsEnd /STK=1 /UG=Rn.50510 /UG_TITLE=EST BE103347 WW domain binding protein 4 (formin binding protein 21) Wbp4 114765 NM_053766 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0045292 // nuclear mRNA cis splicing, via spliceosome // inferred from electronic annotation /// 0045292 // nuclear mRNA cis splicing, via spliceosome // not recorded /// 0045292 // nuclear mRNA cis splicing, via spliceosome // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded /// 0016607 // nuclear speck // inferred from sequence or structural similarity 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070064 // proline-rich region binding // inferred from electronic annotation /// 0070064 // proline-rich region binding // not recorded 1385347_at BE103484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103484 /DB_XREF=gi:8495583 /DB_XREF=UI-R-BX0-arc-f-05-0-UI.s1 /CLONE=UI-R-BX0-arc-f-05-0-UI /FEA=EST /CNT=1 /TID=Rn.50527.1 /TIER=ConsEnd /STK=1 /UG=Rn.50527 /UG_TITLE=EST BE103484 1385348_at BE120187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120187 /DB_XREF=gi:8512292 /DB_XREF=UI-R-CA0-bap-e-11-0-UI.s1 /CLONE=UI-R-CA0-bap-e-11-0-UI /FEA=EST /CNT=1 /TID=Rn.53477.1 /TIER=ConsEnd /STK=1 /UG=Rn.53477 /UG_TITLE=EST BE120187 similar to RIKEN cDNA 1700029H14 LOC290876 290876 NM_001037182 1385349_at BF389818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389818 /DB_XREF=gi:11374654 /DB_XREF=UI-R-BS2-bdp-b-03-0-UI.s1 /CLONE=UI-R-BS2-bdp-b-03-0-UI /FEA=EST /CNT=1 /TID=Rn.57022.1 /TIER=ConsEnd /STK=1 /UG=Rn.57022 /UG_TITLE=ESTs, Weakly similar to CALM_HUMAN CALMODULIN (R.norvegicus) BF389818 centrin 4 Cetn4 688611 XM_001067602 /// XM_002725933 0005814 // centriole // not recorded /// 0005932 // microtubule basal body // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit binding // not recorded 1385350_at BF398122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398122 /DB_XREF=gi:11383108 /DB_XREF=UI-R-BS2-bem-f-06-0-UI.s1 /CLONE=UI-R-BS2-bem-f-06-0-UI /FEA=EST /CNT=1 /TID=Rn.58978.1 /TIER=ConsEnd /STK=1 /UG=Rn.58978 /UG_TITLE=EST BF398122 1385351_at AW528754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528754 /DB_XREF=gi:7171168 /DB_XREF=UI-R-BO1-ajo-h-09-0-UI.s1 /CLONE=UI-R-BO1-ajo-h-09-0-UI /FEA=EST /CNT=1 /TID=Rn.67937.1 /TIER=ConsEnd /STK=1 /UG=Rn.67937 /UG_TITLE=EST AW528754 similar to CD2-associated protein RGD1305090 362598 NM_001162535 1385352_at AW535234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535234 /DB_XREF=gi:7177609 /DB_XREF=UI-R-C4-alu-c-11-0-UI.s1 /CLONE=UI-R-C4-alu-c-11-0-UI /FEA=EST /CNT=1 /TID=Rn.68192.1 /TIER=ConsEnd /STK=1 /UG=Rn.68192 /UG_TITLE=EST AW535234 Solute carrier family 16, member 13 (monocarboxylic acid transporter 13) Slc16a13 287451 NM_001005530 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0015293 // symporter activity // inferred from electronic annotation 1385353_at BE116881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116881 /DB_XREF=gi:8508986 /DB_XREF=UI-R-BS1-azg-c-11-0-UI.s1 /CLONE=UI-R-BS1-azg-c-11-0-UI /FEA=EST /CNT=1 /TID=Rn.69435.1 /TIER=ConsEnd /STK=1 /UG=Rn.69435 /UG_TITLE=EST BE116881 family with sequence similarity 168, member A Fam168a 361614 NM_001108494 1385354_at BE120766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120766 /DB_XREF=gi:8512911 /DB_XREF=UI-R-BS1-azs-g-05-0-UI.s1 /CLONE=UI-R-BS1-azs-g-05-0-UI /FEA=EST /CNT=1 /TID=Rn.69726.1 /TIER=ConsEnd /STK=1 /UG=Rn.69726 /UG_TITLE=EST, Weakly similar to S38783 integrin alpha chain - rat (R.norvegicus) BE120766 similar to integrin alpha 8 RGD1564327 364786 NM_001173972 /// XM_001072297 /// XM_344634 0001656 // metanephros development // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0007613 // memory // inferred from electronic annotation /// 0030030 // cell projection organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // inferred from electronic annotation 0008305 // integrin complex // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032591 // dendritic spine membrane // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0045177 // apical part of cell // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1385355_at BF391308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391308 /DB_XREF=gi:11376160 /DB_XREF=UI-R-CA1-bcv-h-02-0-UI.s1 /CLONE=UI-R-CA1-bcv-h-02-0-UI /FEA=EST /CNT=1 /TID=Rn.70346.1 /TIER=ConsEnd /STK=1 /UG=Rn.70346 /UG_TITLE=EST BF391308 1385356_at BF396263 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396263 /DB_XREF=gi:11381235 /DB_XREF=UI-R-BS2-bdw-b-07-0-UI.s1 /CLONE=UI-R-BS2-bdw-b-07-0-UI /FEA=EST /CNT=1 /TID=Rn.70646.1 /TIER=ConsEnd /STK=1 /UG=Rn.70646 /UG_TITLE=EST, Highly similar to TBL2_MOUSE TRANSDUCIN BETA-LIKE 2 PROTEIN (M.musculus) BF396263 1385357_at BF397669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397669 /DB_XREF=gi:11382653 /DB_XREF=UI-R-BS2-bed-c-02-0-UI.s1 /CLONE=UI-R-BS2-bed-c-02-0-UI /FEA=EST /CNT=1 /TID=Rn.70811.1 /TIER=ConsEnd /STK=1 /UG=Rn.70811 /UG_TITLE=EST BF397669 1385358_at BF403480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403480 /DB_XREF=gi:11391455 /DB_XREF=UI-R-CA1-biz-b-22-0-UI.s1 /CLONE=UI-R-CA1-biz-b-22-0-UI /FEA=EST /CNT=1 /TID=Rn.71183.1 /TIER=ConsEnd /STK=1 /UG=Rn.71183 /UG_TITLE=EST, Weakly similar to Y441_HUMAN HYPOTHETICAL ZINC FINGER PROTEIN KIAA0441 (H.sapiens) BF403480 zinc finger and BTB domain containing 24 Zbtb24 365590 NM_001098667 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // non-traceable author statement /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385359_at BF406890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406890 /DB_XREF=gi:11394865 /DB_XREF=UI-R-BJ2-bps-c-09-0-UI.s1 /CLONE=UI-R-BJ2-bps-c-09-0-UI /FEA=EST /CNT=1 /TID=Rn.71423.1 /TIER=ConsEnd /STK=1 /UG=Rn.71423 /UG_TITLE=EST BF406890 Similar to RIKEN cDNA 4931406C07 RGD1309534 363016 NM_001014206 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385360_at BE107200 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107200 /DB_XREF=gi:8499305 /DB_XREF=UI-R-BS1-ayr-a-08-0-UI.s1 /CLONE=UI-R-BS1-ayr-a-08-0-UI /FEA=EST /CNT=1 /TID=Rn.74861.1 /TIER=ConsEnd /STK=1 /UG=Rn.74861 /UG_TITLE=EST BE107200 1385361_at BE120437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120437 /DB_XREF=gi:8512542 /DB_XREF=UI-R-CA0-bam-d-09-0-UI.s1 /CLONE=UI-R-CA0-bam-d-09-0-UI /FEA=EST /CNT=1 /TID=Rn.75210.1 /TIER=ConsEnd /STK=1 /UG=Rn.75210 /UG_TITLE=EST, Moderately similar to AT5A MOUSE POTENTIAL PHOSPHOLIPID-TRANSPORTING ATPASE VA (M.musculus) BE120437 ATPase, class V, type 10A Atp10a 365266 NM_001141935 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0015914 // phospholipid transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004012 // phospholipid-translocating ATPase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1385362_at BF388014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388014 /DB_XREF=gi:11372838 /DB_XREF=UI-R-CA1-bbx-c-09-0-UI.s1 /CLONE=UI-R-CA1-bbx-c-09-0-UI /FEA=EST /CNT=1 /TID=Rn.75328.1 /TIER=ConsEnd /STK=1 /UG=Rn.75328 /UG_TITLE=EST BF388014 1385363_at BF388841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388841 /DB_XREF=gi:11373665 /DB_XREF=UI-R-BS2-bdf-b-10-0-UI.s1 /CLONE=UI-R-BS2-bdf-b-10-0-UI /FEA=EST /CNT=1 /TID=Rn.75384.1 /TIER=ConsEnd /STK=1 /UG=Rn.75384 /UG_TITLE=EST BF388841 1385364_at BF390761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390761 /DB_XREF=gi:11375603 /DB_XREF=UI-R-CA1-bcp-b-02-0-UI.s1 /CLONE=UI-R-CA1-bcp-b-02-0-UI /FEA=EST /CNT=1 /TID=Rn.75463.2 /TIER=ConsEnd /STK=1 /UG=Rn.75463 /UG_TITLE=ESTs BF390761 1385365_at BI289035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289035 /DB_XREF=gi:14946193 /DB_XREF=UI-R-DK0-cdh-g-05-0-UI.s1 /CLONE=UI-R-DK0-cdh-g-05-0-UI /FEA=EST /CNT=1 /TID=Rn.78984.1 /TIER=ConsEnd /STK=1 /UG=Rn.78984 /UG_TITLE=EST BI289035 exostoses (multiple)-like 1 Extl1 313610 NM_001107985 0016020 // membrane // inferred from electronic annotation /// 0031227 // intrinsic to endoplasmic reticulum membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1385366_at AI071836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071836 /DB_XREF=gi:3398051 /DB_XREF=UI-R-C2-nh-d-07-0-UI.s1 /CLONE=UI-R-C2-nh-d-07-0-UI /FEA=EST /CNT=1 /TID=Rn.22001.1 /TIER=ConsEnd /STK=1 /UG=Rn.22001 /UG_TITLE=EST AI071836 1385367_at BE102861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102861 /DB_XREF=gi:8494960 /DB_XREF=UI-R-BT1-aqq-b-12-0-UI.s1 /CLONE=UI-R-BT1-aqq-b-12-0-UI /FEA=EST /CNT=1 /TID=Rn.50430.1 /TIER=ConsEnd /STK=1 /UG=Rn.50430 /UG_TITLE=EST BE102861 1385368_at AA998786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998786 /DB_XREF=gi:4292262 /DB_XREF=UI-R-C0-im-e-11-0-UI.s1 /CLONE=UI-R-C0-im-e-11-0-UI /FEA=EST /CNT=1 /TID=Rn.13191.1 /TIER=ConsEnd /STK=1 /UG=Rn.13191 /UG_TITLE=EST AA998786 1385369_at BI290883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290883 /DB_XREF=gi:14949888 /DB_XREF=UI-R-DK0-cgi-f-07-0-UI.s1 /CLONE=UI-R-DK0-cgi-f-07-0-UI /FEA=EST /CNT=1 /TID=Rn.79199.1 /TIER=ConsEnd /STK=1 /UG=Rn.79199 /UG_TITLE=EST BI290883 DAZ interacting protein 1-like Dzip1l 315952 NM_001014095 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385370_at BE102234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102234 /DB_XREF=gi:8494333 /DB_XREF=UI-R-BT1-aqk-a-09-0-UI.s1 /CLONE=UI-R-BT1-aqk-a-09-0-UI /FEA=EST /CNT=1 /TID=Rn.50245.1 /TIER=ConsEnd /STK=1 /UG=Rn.50245 /UG_TITLE=EST BE102234 family with sequence similarity 71, member E1 Fam71e1 361564 XM_001077811 /// XM_341847 1385371_at AI763627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763627 /DB_XREF=gi:5209562 /DB_XREF=UI-R-Y0-acj-b-09-0-UI.s1 /CLONE=UI-R-Y0-acj-b-09-0-UI /FEA=EST /CNT=1 /TID=Rn.40161.2 /TIER=ConsEnd /STK=1 /UG=Rn.40161 /UG_TITLE=ESTs AI763627 1385372_at AI639014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639014 /DB_XREF=gi:4700048 /DB_XREF=rx00867s /CLONE=rx00867 /FEA=EST /CNT=1 /TID=Rn.43048.1 /TIER=ConsEnd /STK=1 /UG=Rn.43048 /UG_TITLE=EST AI639014 gastrokine 1 Gkn1 297418 NM_198972 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded 0030141 // stored secretory granule // inferred from electronic annotation /// 0030141 // stored secretory granule // not recorded 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded 1385373_at AA875324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875324 /DB_XREF=gi:4231203 /DB_XREF=UI-R-E0-cn-h-02-0-UI.s1 /CLONE=UI-R-E0-cn-h-02-0-UI /FEA=EST /CNT=1 /TID=Rn.2879.1 /TIER=ConsEnd /STK=1 /UG=Rn.2879 /UG_TITLE=ESTs, Moderately similar to DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE 63 KD SUBUNIT PRECURSOR (R.norvegicus) AA875324 1385374_at AA997236 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997236 /DB_XREF=gi:4282577 /DB_XREF=UI-R-C0-hs-d-11-0-UI.s1 /CLONE=UI-R-C0-hs-d-11-0-UI /FEA=EST /CNT=1 /TID=Rn.33091.1 /TIER=ConsEnd /STK=1 /UG=Rn.33091 /UG_TITLE=EST AA997236 1385375_at AI535212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535212 /DB_XREF=gi:4449347 /DB_XREF=UI-R-C3-ta-h-01-0-UI.s1 /CLONE=UI-R-C3-ta-h-01-0-UI /FEA=EST /CNT=1 /TID=Rn.34775.1 /TIER=ConsEnd /STK=1 /UG=Rn.34775 /UG_TITLE=EST AI535212 1385376_at AA997046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997046 /DB_XREF=gi:4280809 /DB_XREF=UI-R-C0-hk-c-01-0-UI.s1 /CLONE=UI-R-C0-hk-c-01-0-UI /FEA=EST /CNT=1 /TID=Rn.33069.1 /TIER=ConsEnd /STK=1 /UG=Rn.33069 /UG_TITLE=EST AA997046 1385377_at AA858605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858605 /DB_XREF=gi:4229937 /DB_XREF=UI-R-E0-bq-a-05-0-UI.s1 /CLONE=UI-R-E0-bq-a-05-0-UI /FEA=EST /CNT=1 /TID=Rn.103.1 /TIER=ConsEnd /STK=1 /UG=Rn.103 /UG_TITLE=EST AA858605 1385378_at BI286269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286269 /DB_XREF=gi:14940750 /DB_XREF=UI-R-DE0-cai-g-05-0-UI.s1 /CLONE=UI-R-DE0-cai-g-05-0-UI /FEA=EST /CNT=1 /TID=Rn.78649.1 /TIER=ConsEnd /STK=1 /UG=Rn.78649 /UG_TITLE=EST BI286269 dedicator of cytokinesis 9 Dock9 259237 NM_001105759 0050790 // regulation of catalytic activity // not recorded 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0017048 // Rho GTPase binding // not recorded /// 0051020 // GTPase binding // inferred from electronic annotation 1385379_at AA998187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998187 /DB_XREF=gi:4288124 /DB_XREF=UI-R-C0-ib-a-07-0-UI.s1 /CLONE=UI-R-C0-ib-a-07-0-UI /FEA=EST /CNT=1 /TID=Rn.73610.1 /TIER=ConsEnd /STK=1 /UG=Rn.73610 /UG_TITLE=EST AA998187 zinc finger protein 287 Znf287 303212 NM_001107008 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0042035 // regulation of cytokine biosynthetic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1385380_at AI044983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044983 /DB_XREF=gi:3291802 /DB_XREF=UI-R-C1-ke-c-08-0-UI.s1 /CLONE=UI-R-C1-ke-c-08-0-UI /FEA=EST /CNT=1 /TID=Rn.20826.1 /TIER=ConsEnd /STK=1 /UG=Rn.20826 /UG_TITLE=EST AI044983 1385381_at AA996491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996491 /DB_XREF=gi:4280258 /DB_XREF=UI-R-C0-he-a-05-0-UI.s1 /CLONE=UI-R-C0-he-a-05-0-UI /FEA=EST /CNT=1 /TID=Rn.33027.1 /TIER=ConsEnd /STK=1 /UG=Rn.33027 /UG_TITLE=EST AA996491 1385382_at BI294158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294158 /DB_XREF=gi:14956349 /DB_XREF=UI-R-DK0-cdv-b-09-0-UI.s1 /CLONE=UI-R-DK0-cdv-b-09-0-UI /FEA=EST /CNT=1 /TID=Rn.79532.1 /TIER=ConsEnd /STK=1 /UG=Rn.79532 /UG_TITLE=EST BI294158 a disintegrin and metallopeptidase domain 19 (meltrin beta) Adam19 303068 NM_001160228 0006508 // proteolysis // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0007507 // heart development // not recorded 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1385383_at AI145747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145747 /DB_XREF=gi:3667546 /DB_XREF=UI-R-BT0-py-a-10-0-UI.s1 /CLONE=UI-R-BT0-py-a-10-0-UI /FEA=EST /CNT=1 /TID=Rn.28599.1 /TIER=ConsEnd /STK=1 /UG=Rn.28599 /UG_TITLE=EST AI145747 coiled-coil domain containing 113 Ccdc113 291847 NM_001191598 /// XM_001060951 /// XM_214631 0043234 // protein complex // not recorded 1385384_at BF416768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416768 /DB_XREF=gi:11404757 /DB_XREF=UI-R-CN0-bkz-g-03-0-UI.s1 /CLONE=UI-R-CN0-bkz-g-03-0-UI /FEA=EST /CNT=1 /TID=Rn.64418.1 /TIER=ConsEnd /STK=1 /UG=Rn.64418 /UG_TITLE=EST BF416768 1385385_at BE116745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116745 /DB_XREF=gi:8508850 /DB_XREF=UI-R-BS1-aye-g-08-0-UI.s1 /CLONE=UI-R-BS1-aye-g-08-0-UI /FEA=EST /CNT=1 /TID=Rn.75089.1 /TIER=ConsEnd /STK=1 /UG=Rn.75089 /UG_TITLE=EST BE116745 1385386_at BI302745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302745 /DB_XREF=gi:14979025 /DB_XREF=UI-R-DO0-ciy-e-15-0-UI.s1 /CLONE=UI-R-DO0-ciy-e-15-0-UI /FEA=EST /CNT=1 /TID=Rn.77405.1 /TIER=ConsEnd /STK=1 /UG=Rn.77405 /UG_TITLE=EST BI302745 ischemia related factor vof-16 Vof16 259227 NM_147207 1385387_at AA925143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925143 /DB_XREF=gi:4236334 /DB_XREF=UI-R-A1-en-b-08-0-UI.s1 /CLONE=UI-R-A1-en-b-08-0-UI /FEA=EST /CNT=1 /TID=Rn.32651.1 /TIER=ConsEnd /STK=1 /UG=Rn.32651 /UG_TITLE=EST AA925143 NK2 homeobox 2 Nkx2-2 366214 NM_001191904 /// XM_001056116 /// XM_345446 0003323 // pancreatic B cell development // not recorded /// 0003326 // pancreatic A cell fate commitment // not recorded /// 0003327 // pancreatic B cell fate commitment // not recorded /// 0003329 // pancreatic PP cell fate commitment // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007224 // smoothened signaling pathway // not recorded /// 0007399 // nervous system development // not recorded /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0014003 // oligodendrocyte development // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0021522 // spinal cord motor neuron differentiation // not recorded /// 0021529 // spinal cord oligodendrocyte cell differentiation // not recorded /// 0021530 // spinal cord oligodendrocyte cell fate specification // not recorded /// 0021554 // optic nerve development // inferred from expression pattern /// 0030154 // cell differentiation // not recorded /// 0031018 // endocrine pancreas development // not recorded /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0045595 // regulation of cell differentiation // not recorded /// 0045597 // positive regulation of cell differentiation // not recorded /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048468 // cell development // not recorded /// 0048565 // digestive tract development // not recorded /// 0048665 // neuron fate specification // not recorded /// 0048708 // astrocyte differentiation // not recorded /// 0048714 // positive regulation of oligodendrocyte differentiation // not recorded /// 0060580 // ventral spinal cord interneuron fate determination // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0044424 // intracellular part // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1385388_at AI045847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045847 /DB_XREF=gi:3292666 /DB_XREF=UI-R-C1-km-c-10-0-UI.s1 /CLONE=UI-R-C1-km-c-10-0-UI /FEA=EST /CNT=1 /TID=Rn.55980.2 /TIER=ConsEnd /STK=1 /UG=Rn.55980 /UG_TITLE=ESTs AI045847 1385389_x_at AI045847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045847 /DB_XREF=gi:3292666 /DB_XREF=UI-R-C1-km-c-10-0-UI.s1 /CLONE=UI-R-C1-km-c-10-0-UI /FEA=EST /CNT=1 /TID=Rn.55980.2 /TIER=ConsEnd /STK=1 /UG=Rn.55980 /UG_TITLE=ESTs AI045847 1385390_at BF395456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395456 /DB_XREF=gi:11380422 /DB_XREF=UI-R-CM0-bjk-h-08-0-UI.s1 /CLONE=UI-R-CM0-bjk-h-08-0-UI /FEA=EST /CNT=1 /TID=Rn.70583.1 /TIER=ConsEnd /STK=1 /UG=Rn.70583 /UG_TITLE=EST BF395456 1385391_at AW524879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524879 /DB_XREF=gi:7167264 /DB_XREF=UI-R-BO0-aid-d-01-0-UI.s1 /CLONE=UI-R-BO0-aid-d-01-0-UI /FEA=EST /CNT=1 /TID=Rn.45944.1 /TIER=ConsEnd /STK=1 /UG=Rn.45944 /UG_TITLE=EST AW524879 cancer antigen 1 Cage1 306872 NM_001012052 1385392_at BE101795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101795 /DB_XREF=gi:8493893 /DB_XREF=UI-R-BT1-aqh-e-02-0-UI.s1 /CLONE=UI-R-BT1-aqh-e-02-0-UI /FEA=EST /CNT=1 /TID=Rn.50127.1 /TIER=ConsEnd /STK=1 /UG=Rn.50127 /UG_TITLE=EST BE101795 Mycbp associated protein Mycbpap 494192 NM_001009482 0007268 // synaptic transmission // inferred from expression pattern /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from sequence or structural similarity /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007605 // sensory perception of sound // inferred from expression pattern /// 0030154 // cell differentiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019897 // extrinsic to plasma membrane // traceable author statement 0005515 // protein binding // inferred from electronic annotation 1385393_at BE099283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099283 /DB_XREF=gi:8491159 /DB_XREF=UI-R-BJ1-aub-e-10-0-UI.s1 /CLONE=UI-R-BJ1-aub-e-10-0-UI /FEA=EST /CNT=1 /TID=Rn.74710.1 /TIER=ConsEnd /STK=1 /UG=Rn.74710 /UG_TITLE=EST BE099283 1385394_at AI555523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555523 /DB_XREF=gi:4487880 /DB_XREF=UI-R-C2p-qw-f-07-0-UI.s1 /CLONE=UI-R-C2p-qw-f-07-0-UI /FEA=EST /CNT=1 /TID=Rn.39278.1 /TIER=ConsEnd /STK=1 /UG=Rn.39278 /UG_TITLE=EST AI555523 membrane-spanning 4-domains, subfamily A, member 10 Ms4a10 293739 NM_001106336 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1385395_at AI549268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549268 /DB_XREF=gi:4466756 /DB_XREF=UI-R-C3-tx-f-04-0-UI.s1 /CLONE=UI-R-C3-tx-f-04-0-UI /FEA=EST /CNT=1 /TID=Rn.42014.1 /TIER=ConsEnd /STK=1 /UG=Rn.42014 /UG_TITLE=EST AI549268 syntaxin 17 Stx17 252853 NM_145723 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1385396_at AI044315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044315 /DB_XREF=gi:3291218 /DB_XREF=UI-R-C1-jx-d-04-0-UI.s1 /CLONE=UI-R-C1-jx-d-04-0-UI /FEA=EST /CNT=1 /TID=Rn.15871.1 /TIER=ConsEnd /STK=1 /UG=Rn.15871 /UG_TITLE=EST AI044315 1385397_at AA859085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859085 /DB_XREF=gi:4229353 /DB_XREF=UI-R-A0-ak-h-10-0-UI.s1 /CLONE=UI-R-A0-ak-h-10-0-UI /FEA=EST /CNT=1 /TID=Rn.16959.1 /TIER=ConsEnd /STK=1 /UG=Rn.16959 /UG_TITLE=EST AA859085 STEAP family member 4 Steap4 499991 NM_001044265 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006826 // iron ion transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0045444 // fat cell differentiation // not recorded /// 0045444 // fat cell differentiation // inferred from sequence or structural similarity /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1385398_at BF408988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408988 /DB_XREF=gi:11396963 /DB_XREF=UI-R-BJ2-bpn-g-03-0-UI.s1 /CLONE=UI-R-BJ2-bpn-g-03-0-UI /FEA=EST /CNT=1 /TID=Rn.71521.1 /TIER=ConsEnd /STK=1 /UG=Rn.71521 /UG_TITLE=EST BF408988 zinc finger and BTB domain containing 7B Zbtb7b 295248 NM_001106446 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1385399_at AI071789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071789 /DB_XREF=gi:3398004 /DB_XREF=UI-R-C2-nj-g-04-0-UI.s1 /CLONE=UI-R-C2-nj-g-04-0-UI /FEA=EST /CNT=1 /TID=Rn.20638.1 /TIER=ConsEnd /STK=1 /UG=Rn.20638 /UG_TITLE=EST AI071789 1385400_at BI288461 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288461 /DB_XREF=gi:14945069 /DB_XREF=UI-R-DK0-cdb-b-07-0-UI.s1 /CLONE=UI-R-DK0-cdb-b-07-0-UI /FEA=EST /CNT=1 /TID=Rn.78899.1 /TIER=ConsEnd /STK=1 /UG=Rn.78899 /UG_TITLE=EST, Moderately similar to VAB2_MOUSE VACUOLAR ATP SYNTHASE SUBUNIT B, BRAIN ISOFORM (V-ATPASE B2 SUBUNIT) (VACUOLAR PROTON PUMP B ISOFORM 2) (ENDOMEMBRANE PROTON PUMP 58 KDA SUBUNIT) (R.norvegicus) BI288461 ATPase, H transporting, lysosomal V1 subunit B1 Atp6v1b1 312488 NM_001107867 0001503 // ossification // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006885 // regulation of pH // not recorded /// 0007588 // excretion // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0015992 // proton transport // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0042777 // plasma membrane ATP synthesis coupled proton transport // inferred from electronic annotation /// 0046034 // ATP metabolic process // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016323 // basolateral plasma membrane // not recorded /// 0016324 // apical plasma membrane // not recorded /// 0016469 // proton-transporting two-sector ATPase complex // inferred from electronic annotation /// 0016471 // vacuolar proton-transporting V-type ATPase complex // not recorded /// 0033178 // proton-transporting two-sector ATPase complex, catalytic domain // inferred from electronic annotation /// 0033180 // proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation /// 0045177 // apical part of cell // traceable author statement 0005524 // ATP binding // inferred from electronic annotation /// 0015078 // hydrogen ion transmembrane transporter activity // not recorded /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0046933 // hydrogen ion transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 1385401_at BI290381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290381 /DB_XREF=gi:14948894 /DB_XREF=UI-R-DK0-cfv-e-12-0-UI.s1 /CLONE=UI-R-DK0-cfv-e-12-0-UI /FEA=EST /CNT=1 /TID=Rn.79144.1 /TIER=ConsEnd /STK=1 /UG=Rn.79144 /UG_TITLE=EST BI290381 1385402_at AI011863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011863 /DB_XREF=gi:3225695 /DB_XREF=EST206314 /CLONE=RPLAP77 /FEA=EST /CNT=1 /TID=Rn.12691.2 /TIER=ConsEnd /STK=1 /UG=Rn.12691 /UG_TITLE=ESTs AI011863 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2) Galnt2 292090 NM_001106196 0002378 // immunoglobulin biosynthetic process // not recorded /// 0002378 // immunoglobulin biosynthetic process // inferred from electronic annotation /// 0018242 // protein O-linked glycosylation via serine // not recorded /// 0018242 // protein O-linked glycosylation via serine // inferred from electronic annotation /// 0018243 // protein O-linked glycosylation via threonine // not recorded /// 0018243 // protein O-linked glycosylation via threonine // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005795 // Golgi stack // not recorded /// 0005795 // Golgi stack // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // not recorded /// 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030145 // manganese ion binding // not recorded /// 0030145 // manganese ion binding // inferred from electronic annotation 1385403_at AI071834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071834 /DB_XREF=gi:3398049 /DB_XREF=UI-R-C2-nh-d-05-0-UI.s1 /CLONE=UI-R-C2-nh-d-05-0-UI /FEA=EST /CNT=1 /TID=Rn.20651.1 /TIER=ConsEnd /STK=1 /UG=Rn.20651 /UG_TITLE=ESTs AI071834 ring finger protein 121 Rnf121 308871 NM_001107540 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385404_at AW522699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522699 /DB_XREF=gi:7165124 /DB_XREF=UI-R-BO0-ahk-c-01-0-UI.s1 /CLONE=UI-R-BO0-ahk-c-01-0-UI /FEA=EST /CNT=1 /TID=Rn.45470.1 /TIER=ConsEnd /STK=1 /UG=Rn.45470 /UG_TITLE=EST, Moderately similar to T46316 hypothetical protein DKFZp434N1511.1 (H.sapiens) AW522699 ankyrin repeat domain 16 Ankrd16 307102 NM_001033698 1385405_at AI535213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535213 /DB_XREF=gi:4449348 /DB_XREF=UI-R-C3-ta-h-04-0-UI.s1 /CLONE=UI-R-C3-ta-h-04-0-UI /FEA=EST /CNT=1 /TID=Rn.54393.1 /TIER=ConsEnd /STK=1 /UG=Rn.54393 /LL=57034 /UG_GENE=Adam23 /UG_TITLE=a disintegrin and metalloprotease domain 23 AI535213 ADAM metallopeptidase domain 23 Adam23 301460 NM_001029899 0006508 // proteolysis // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1385406_at BG380066 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380066 /DB_XREF=gi:13304538 /DB_XREF=UI-R-CS0-btl-f-06-0-UI.s1 /CLONE=UI-R-CS0-btl-f-06-0-UI /FEA=EST /CNT=1 /TID=Rn.66717.1 /TIER=ConsEnd /STK=1 /UG=Rn.66717 /UG_TITLE=EST BG380066 1385407_at AI511405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511405 /DB_XREF=gi:4417104 /DB_XREF=UI-R-C3-sh-a-05-0-UI.s1 /CLONE=UI-R-C3-sh-a-05-0-UI /FEA=EST /CNT=1 /TID=Rn.73941.1 /TIER=ConsEnd /STK=1 /UG=Rn.73941 /UG_TITLE=EST, Highly similar to T12540 hypothetical protein DKFZp434J214.1 (H.sapiens) AI511405 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1385408_at BI288589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288589 /DB_XREF=gi:14945324 /DB_XREF=UI-R-DK0-cdg-f-05-0-UI.s1 /CLONE=UI-R-DK0-cdg-f-05-0-UI /FEA=EST /CNT=1 /TID=Rn.78917.1 /TIER=ConsEnd /STK=1 /UG=Rn.78917 /UG_TITLE=EST, Highly similar to T00081 hypothetical protein KIAA0518 (H.sapiens) BI288589 MAX gene associated Mga 499874 XM_002726215 /// XM_575215 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0071339 // MLL1 complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1385409_at AI045505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045505 /DB_XREF=gi:3292324 /DB_XREF=UI-R-C1-kj-f-09-0-UI.s1 /CLONE=UI-R-C1-kj-f-09-0-UI /FEA=EST /CNT=1 /TID=Rn.20885.2 /TIER=ConsEnd /STK=1 /UG=Rn.20885 /UG_TITLE=ESTs, Highly similar to A59297 myosin X - mouse (M.musculus) AI045505 myosin X Myo10 310178 NM_001107657 0007165 // signal transduction // inferred from electronic annotation 0005856 // cytoskeleton // inferred from electronic annotation /// 0016459 // myosin complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1385410_at BF406439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406439 /DB_XREF=gi:11394414 /DB_XREF=UI-R-CA1-bjf-p-24-0-UI.s1 /CLONE=UI-R-CA1-bjf-p-24-0-UI /FEA=EST /CNT=1 /TID=Rn.60967.1 /TIER=ConsEnd /STK=1 /UG=Rn.60967 /UG_TITLE=EST BF406439 Hypothetical protein LOC680503 LOC680503 680503 XM_001057468 /// XM_001076496 1385411_at BE120893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120893 /DB_XREF=gi:8512998 /DB_XREF=UI-R-BS1-azt-g-01-0-UI.s1 /CLONE=UI-R-BS1-azt-g-01-0-UI /FEA=EST /CNT=1 /TID=Rn.69733.1 /TIER=ConsEnd /STK=1 /UG=Rn.69733 /UG_TITLE=EST BE120893 ubiquitin specific protease 43 Usp43_predicted 100147704 NM_001126303 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation 1385412_at AI556003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556003 /DB_XREF=gi:4488366 /DB_XREF=UI-R-C2p-qz-b-10-0-UI.s1 /CLONE=UI-R-C2p-qz-b-10-0-UI /FEA=EST /CNT=1 /TID=Rn.38398.1 /TIER=ConsEnd /STK=1 /UG=Rn.38398 /UG_TITLE=EST AI556003 hypothetical protein LOC100364488 LOC100364488 100364488 XM_002726285 0005488 // binding // inferred from electronic annotation 1385413_at AI549431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549431 /DB_XREF=gi:4466919 /DB_XREF=UI-R-C3-ua-g-03-0-UI.s1 /CLONE=UI-R-C3-ua-g-03-0-UI /FEA=EST /CNT=1 /TID=Rn.43187.1 /TIER=ConsEnd /STK=1 /UG=Rn.43187 /UG_TITLE=EST AI549431 epidermal growth factor receptor Egfr 24329 NM_031507 0000186 // activation of MAPKK activity // inferred from mutant phenotype /// 0000902 // cell morphogenesis // not recorded /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0001892 // embryonic placenta development // not recorded /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0001942 // hair follicle development // not recorded /// 0001942 // hair follicle development // inferred from electronic annotation /// 0006412 // translation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006970 // response to osmotic stress // inferred from expression pattern /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0007165 // signal transduction // inferred from direct assay /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from direct assay /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from mutant phenotype /// 0007173 // epidermal growth factor receptor signaling pathway // not recorded /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from direct assay /// 0007435 // salivary gland morphogenesis // not recorded /// 0007435 // salivary gland morphogenesis // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008544 // epidermis development // not recorded /// 0008544 // epidermis development // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0021795 // cerebral cortex cell migration // not recorded /// 0021795 // cerebral cortex cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0031659 // positive regulation of cyclin-dependent protein kinase activity involved in G1/S // not recorded /// 0031659 // positive regulation of cyclin-dependent protein kinase activity involved in G1/S // inferred from electronic annotation /// 0033993 // response to lipid // inferred from expression pattern /// 0035413 // positive regulation of catenin protein nuclear translocation // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042327 // positive regulation of phosphorylation // not recorded /// 0042327 // positive regulation of phosphorylation // inferred from electronic annotation /// 0042698 // ovulation cycle // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0043406 // positive regulation of MAP kinase activity // not recorded /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0043586 // tongue development // inferred from expression pattern /// 0045429 // positive regulation of nitric oxide biosynthetic process // not recorded /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045930 // negative regulation of mitotic cell cycle // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0048143 // astrocyte activation // inferred from mutant phenotype /// 0048546 // digestive tract morphogenesis // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0048812 // neuron projection morphogenesis // inferred from mutant phenotype /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050999 // regulation of nitric-oxide synthase activity // not recorded /// 0050999 // regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from mutant phenotype /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype /// 0060571 // morphogenesis of an epithelial fold // not recorded /// 0060571 // morphogenesis of an epithelial fold // inferred from electronic annotation /// 0070141 // response to UV-A // not recorded /// 0070141 // response to UV-A // inferred from electronic annotation 0005622 // intracellular // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030139 // endocytic vesicle // inferred from direct assay /// 0030139 // endocytic vesicle // not recorded /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0070435 // Shc-EGFR complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004716 // receptor signaling protein tyrosine kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // not recorded /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005006 // epidermal growth factor receptor activity // inferred from direct assay /// 0005006 // epidermal growth factor receptor activity // inferred from mutant phenotype /// 0005006 // epidermal growth factor receptor activity // not recorded /// 0005006 // epidermal growth factor receptor activity // traceable author statement /// 0005006 // epidermal growth factor receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019903 // protein phosphatase binding // not recorded /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0030235 // nitric-oxide synthase regulator activity // not recorded /// 0030235 // nitric-oxide synthase regulator activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0048408 // epidermal growth factor binding // inferred from mutant phenotype /// 0051015 // actin filament binding // not recorded /// 0051015 // actin filament binding // inferred from electronic annotation 1385414_at BE117044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117044 /DB_XREF=gi:8509149 /DB_XREF=UI-R-BJ1-awt-b-10-0-UI.s1 /CLONE=UI-R-BJ1-awt-b-10-0-UI /FEA=EST /CNT=1 /TID=Rn.52775.1 /TIER=ConsEnd /STK=1 /UG=Rn.52775 /UG_TITLE=EST BE117044 CD8a molecule Cd8a 24930 NM_031538 0002456 // T cell mediated immunity // inferred from electronic annotation /// 0002456 // T cell mediated immunity // not recorded /// 0006954 // inflammatory response // non-traceable author statement /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0042110 // T cell activation // inferred from mutant phenotype /// 0045065 // cytotoxic T cell differentiation // inferred from electronic annotation /// 0045065 // cytotoxic T cell differentiation // not recorded /// 0050850 // positive regulation of calcium-mediated signaling // inferred from electronic annotation /// 0050850 // positive regulation of calcium-mediated signaling // not recorded 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1385415_at BE097539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097539 /DB_XREF=gi:8488470 /DB_XREF=UI-R-BO1-apy-g-03-0-UI.s1 /CLONE=UI-R-BO1-apy-g-03-0-UI /FEA=EST /CNT=1 /TID=Rn.49632.1 /TIER=ConsEnd /STK=1 /UG=Rn.49632 /UG_TITLE=EST BE097539 similar to RIKEN cDNA 2010305A19 RGD1305274 298377 NM_001106674 0005488 // binding // inferred from electronic annotation 1385416_at BI285540 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285540 /DB_XREF=gi:14939288 /DB_XREF=UI-R-CW0s-ccb-c-12-0-UI.s1 /CLONE=UI-R-CW0s-ccb-c-12-0-UI /FEA=EST /CNT=1 /TID=Rn.78580.1 /TIER=ConsEnd /STK=1 /UG=Rn.78580 /UG_TITLE=EST BI285540 1385417_at AI071180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071180 /DB_XREF=gi:3397395 /DB_XREF=UI-R-C2-my-e-06-0-UI.s1 /CLONE=UI-R-C2-my-e-06-0-UI /FEA=EST /CNT=1 /TID=Rn.41117.2 /TIER=ConsEnd /STK=1 /UG=Rn.41117 /UG_TITLE=ESTs, Weakly similar to T14343 zinc finger RNA binding protein, chromosome-associated - mouse (M.musculus) AI071180 similar to KIAA1086 protein RGD1304737 314639 XM_001070148 /// XM_234923 0006955 // immune response // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1385418_at AI502524 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502524 /DB_XREF=gi:4400375 /DB_XREF=UI-R-C2-nc-h-02-0-UI.s1 /CLONE=UI-R-C2-nc-h-02-0-UI /FEA=EST /CNT=1 /TID=Rn.65910.1 /TIER=ConsEnd /STK=1 /UG=Rn.65910 /UG_TITLE=EST AI502524 similar to CG33714-PB, isoform B LOC688717 688717 NM_001109507 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1385419_at AI073065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073065 /DB_XREF=gi:3399259 /DB_XREF=UI-R-Y0-lx-e-05-0-UI.s1 /CLONE=UI-R-Y0-lx-e-05-0-UI /FEA=EST /CNT=1 /TID=Rn.20344.1 /TIER=ConsEnd /STK=1 /UG=Rn.20344 /UG_TITLE=EST AI073065 G protein-coupled receptor 143 Gpr143 302619 NM_001106958 0032400 // melanosome localization // not recorded /// 0032438 // melanosome organization // not recorded 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0042470 // melanosome // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1385420_at BF390548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390548 /DB_XREF=gi:11375394 /DB_XREF=UI-R-CA1-bcc-d-03-0-UI.s1 /CLONE=UI-R-CA1-bcc-d-03-0-UI /FEA=EST /CNT=1 /TID=Rn.57187.1 /TIER=ConsEnd /STK=1 /UG=Rn.57187 /UG_TITLE=EST, Weakly similar to DVL1 RAT SEGMENT POLARITY PROTEIN DISHEVELLED HOMOLOG DVL-1 (R.norvegicus) BF390548 dishevelled, dsh homolog 3 (Drosophila) Dvl3 303811 NM_001107081 0001934 // positive regulation of protein phosphorylation // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035567 // non-canonical Wnt receptor signaling pathway // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043507 // positive regulation of JUN kinase activity // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0005622 // intracellular // inferred from electronic annotation 0002020 // protease binding // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1385421_at BF393060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393060 /DB_XREF=gi:11377920 /DB_XREF=UI-R-CA0-bgp-h-03-0-UI.s1 /CLONE=UI-R-CA0-bgp-h-03-0-UI /FEA=EST /CNT=1 /TID=Rn.70456.1 /TIER=ConsEnd /STK=1 /UG=Rn.70456 /UG_TITLE=EST BF393060 similar to RIKEN cDNA 1700029I15 RGD1563263 499836 NM_001109201 1385422_at BF396651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396651 /DB_XREF=gi:11381629 /DB_XREF=UI-R-BS2-bea-e-11-0-UI.s1 /CLONE=UI-R-BS2-bea-e-11-0-UI /FEA=EST /CNT=1 /TID=Rn.64718.3 /TIER=ConsEnd /STK=1 /UG=Rn.64718 /UG_TITLE=ESTs, Weakly similar to T32633 hypothetical protein F15E6.1 - Caenorhabditis elegans (C.elegans) BF396651 myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila) Mll5 311968 XM_001059700 /// XM_231287 0002446 // neutrophil mediated immunity // inferred from electronic annotation /// 0006306 // DNA methylation // inferred from electronic annotation /// 0016571 // histone methylation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0042119 // neutrophil activation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0048384 // retinoic acid receptor signaling pathway // inferred from electronic annotation 0070688 // MLL5-L complex // inferred from electronic annotation 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0042800 // histone methyltransferase activity (H3-K4 specific) // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385423_at AW521399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521399 /DB_XREF=gi:7163777 /DB_XREF=UI-R-BJ0p-afe-a-08-0-UI.s1 /CLONE=UI-R-BJ0p-afe-a-08-0-UI /FEA=EST /CNT=1 /TID=Rn.67614.1 /TIER=ConsEnd /STK=1 /UG=Rn.67614 /UG_TITLE=EST, Moderately similar to 2016304A motor protein (H.sapiens) AW521399 inner membrane protein, mitochondrial Immt 312444 NM_001034928 0009409 // response to cold // inferred from expression pattern 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031305 // integral to mitochondrial inner membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1385424_at AA900738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900738 /DB_XREF=gi:4233233 /DB_XREF=UI-R-E0-di-b-06-0-UI.s1 /CLONE=UI-R-E0-di-b-06-0-UI /FEA=EST /CNT=1 /TID=Rn.32475.1 /TIER=ConsEnd /STK=1 /UG=Rn.32475 /UG_TITLE=EST AA900738 1385425_at BI293713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293713 /DB_XREF=gi:14955473 /DB_XREF=UI-R-DK0-cdu-h-01-0-UI.s1 /CLONE=UI-R-DK0-cdu-h-01-0-UI /FEA=EST /CNT=1 /TID=Rn.58157.2 /TIER=ConsEnd /STK=1 /UG=Rn.58157 /UG_TITLE=ESTs BI293713 von Willebrand factor A domain containing 3A Vwa3a 293449 NM_001079885 /// NM_001198653 1385426_at AI502796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502796 /DB_XREF=gi:4400647 /DB_XREF=UI-R-C1-lc-f-12-0-UI.s1 /CLONE=UI-R-C1-lc-f-12-0-UI /FEA=EST /CNT=1 /TID=Rn.35486.1 /TIER=ConsEnd /STK=1 /UG=Rn.35486 /UG_TITLE=EST AI502796 coiled-coil domain containing 109B Ccdc109b 295462 XM_001076863 /// XM_215707 1385427_at BE118330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118330 /DB_XREF=gi:8510435 /DB_XREF=UI-R-BS1-azk-d-07-0-UI.s1 /CLONE=UI-R-BS1-azk-d-07-0-UI /FEA=EST /CNT=1 /TID=Rn.23911.2 /TIER=ConsEnd /STK=1 /UG=Rn.23911 /UG_TITLE=ESTs, Moderately similar to A Chain A, Musashi1 Rbd2, Nmr (M.musculus) BE118330 Musashi homolog 2 (Drosophila) Msi2 360596 XM_001081205 /// XM_340876 0048864 // stem cell development // not recorded 0005737 // cytoplasm // not recorded /// 0005844 // polysome // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003727 // single-stranded RNA binding // not recorded /// 0008266 // poly(U) RNA binding // not recorded 1385428_at AI072630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072630 /DB_XREF=gi:3398824 /DB_XREF=UI-R-C2-nn-f-07-0-UI.s1 /CLONE=UI-R-C2-nn-f-07-0-UI /FEA=EST /CNT=1 /TID=Rn.20201.1 /TIER=ConsEnd /STK=1 /UG=Rn.20201 /UG_TITLE=ESTs AI072630 exportin 4 Xpo4 290280 NM_001106042 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1385429_at AA957452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957452 /DB_XREF=gi:4277342 /DB_XREF=UI-R-E1-fw-a-03-0-UI.s1 /CLONE=UI-R-E1-fw-a-03-0-UI /FEA=EST /CNT=1 /TID=Rn.9285.1 /TIER=ConsEnd /STK=1 /UG=Rn.9285 /UG_TITLE=ESTs AA957452 1385430_at AA799637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799637 /DB_XREF=gi:2862592 /DB_XREF=EST189134 /CLONE=RHEAD45 /FEA=EST /CNT=1 /TID=Rn.44185.2 /TIER=ConsEnd /STK=1 /UG=Rn.44185 /UG_TITLE=ESTs, Weakly similar to A55071 hydrogen peroxide-inducible protein hic-5 - mouse (M.musculus) AA799637 LIM and senescent cell antigen-like domains 1 Lims1 499443 NM_001145456 0007160 // cell-matrix adhesion // not recorded /// 0007163 // establishment or maintenance of cell polarity // not recorded /// 0016337 // cell-cell adhesion // not recorded /// 0043009 // chordate embryonic development // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from physical interaction 0005829 // cytosol // not recorded /// 0005925 // focal adhesion // not recorded /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0019904 // protein domain specific binding // inferred by curator /// 0046872 // metal ion binding // inferred from electronic annotation 1385431_at BF409456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409456 /DB_XREF=gi:11397431 /DB_XREF=UI-R-CA1-blj-d-02-0-UI.s1 /CLONE=UI-R-CA1-blj-d-02-0-UI /FEA=EST /CNT=1 /TID=Rn.61363.1 /TIER=ConsEnd /STK=1 /UG=Rn.61363 /UG_TITLE=EST, Highly similar to T14273 zinc finger protein 106 - mouse (M.musculus) BF409456 1385432_at AW522302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522302 /DB_XREF=gi:7164687 /DB_XREF=UI-R-BO0-ahe-a-05-0-UI.s1 /CLONE=UI-R-BO0-ahe-a-05-0-UI /FEA=EST /CNT=1 /TID=Rn.67647.1 /TIER=ConsEnd /STK=1 /UG=Rn.67647 /UG_TITLE=EST AW522302 similar to Galactosylceramide sulfotransferase (GalCer sulfotransferase) (Cerebroside sulfotransferase) (3-phosphoadenylylsulfate:galactosylceramide 3-sulfotransferase) (3-phosphoadenosine-5phosphosulfate:GalCer sulfotransferase) LOC683713 683713 NM_001109447 0009058 // biosynthetic process // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001733 // galactosylceramide sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1385433_at AI576354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576354 /DB_XREF=gi:4560730 /DB_XREF=UI-R-Y0-vf-f-07-0-UI.s1 /CLONE=UI-R-Y0-vf-f-07-0-UI /FEA=EST /CNT=1 /TID=Rn.39118.1 /TIER=ConsEnd /STK=1 /UG=Rn.39118 /UG_TITLE=EST AI576354 metastasis suppressor 1 Mtss1 362918 NM_001130563 0007015 // actin filament organization // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0030041 // actin filament polymerization // not recorded /// 0046847 // filopodium assembly // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0015629 // actin cytoskeleton // not recorded 0003779 // actin binding // not recorded /// 0003785 // actin monomer binding // not recorded /// 0005102 // receptor binding // not recorded /// 0008093 // cytoskeletal adaptor activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation 1385434_at AI705087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI705087 /DB_XREF=gi:4992987 /DB_XREF=UI-R-G0-uu-e-06-0-UI.s2 /CLONE=UI-R-G0-uu-e-06-0-UI /FEA=EST /CNT=1 /TID=Rn.40808.1 /TIER=ConsEnd /STK=1 /UG=Rn.40808 /UG_TITLE=EST AI705087 Prostaglandin E receptor 2 (subtype EP2) Ptger2 81752 NM_031088 0001501 // skeletal system development // non-traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004957 // prostaglandin E receptor activity // inferred from direct assay /// 0004957 // prostaglandin E receptor activity // inferred from electronic annotation 1385435_at BF412368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412368 /DB_XREF=gi:11400357 /DB_XREF=UI-R-BT1-bna-b-08-0-UI.s1 /CLONE=UI-R-BT1-bna-b-08-0-UI /FEA=EST /CNT=1 /TID=Rn.75959.1 /TIER=ConsEnd /STK=1 /UG=Rn.75959 /UG_TITLE=EST BF412368 solute carrier family 36 (proton/amino acid symporter), member 3 Slc36a3 303148 NM_001024764 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1385436_at AI556940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556940 /DB_XREF=gi:4489303 /DB_XREF=UI-R-C2p-rp-g-04-0-UI.s1 /CLONE=UI-R-C2p-rp-g-04-0-UI /FEA=EST /CNT=1 /TID=Rn.38626.1 /TIER=ConsEnd /STK=1 /UG=Rn.38626 /UG_TITLE=ESTs, Weakly similar to YT41_CAEEL HYPOTHETICAL 136.1 KDA PROTEIN B0416.1 IN CHROMOSOME X (C.elegans) AI556940 transmembrane channel-like 4 Tmc4 308310 NM_001034104 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1385437_at BG376590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376590 /DB_XREF=gi:13301062 /DB_XREF=UI-R-CU0-buu-e-04-0-UI.s1 /CLONE=UI-R-CU0-buu-e-04-0-UI /FEA=EST /CNT=1 /TID=Rn.66402.1 /TIER=ConsEnd /STK=1 /UG=Rn.66402 /UG_TITLE=EST, Moderately similar to A36240 pyrimidine synthesis protein CAD (H.sapiens) BG376590 carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase Cad 24240 NM_001105710 0006207 // 'de novo' pyrimidine base biosynthetic process // inferred from electronic annotation /// 0006221 // pyrimidine nucleotide biosynthetic process // inferred from electronic annotation /// 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0006807 // nitrogen compound metabolic process // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0009790 // embryo development // inferred from expression pattern /// 0014075 // response to amine stimulus // inferred from expression pattern /// 0017144 // drug metabolic process // inferred from mutant phenotype /// 0031000 // response to caffeine // inferred from expression pattern /// 0031100 // organ regeneration // inferred from expression pattern /// 0033574 // response to testosterone stimulus // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded /// 0016363 // nuclear matrix // not recorded /// 0043234 // protein complex // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004070 // aspartate carbamoyltransferase activity // inferred from direct assay /// 0004070 // aspartate carbamoyltransferase activity // inferred from electronic annotation /// 0004086 // carbamoyl-phosphate synthase activity // inferred from electronic annotation /// 0004088 // carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity // inferred from direct assay /// 0004151 // dihydroorotase activity // inferred from direct assay /// 0004151 // dihydroorotase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016743 // carboxyl- or carbamoyltransferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation /// 0016812 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0042802 // identical protein binding // inferred from direct assay 1385438_at AA859612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859612 /DB_XREF=gi:4230158 /DB_XREF=UI-R-E0-bs-f-12-0-UI.s1 /CLONE=UI-R-E0-bs-f-12-0-UI /FEA=EST /CNT=1 /TID=Rn.81040.1 /TIER=ConsEnd /STK=1 /UG=Rn.81040 /UG_TITLE=EST, Weakly similar to 810024J URF 4 (H.sapiens) AA859612 NADH dehydrogenase subunit 4 ND4 26201 0001666 // response to hypoxia // inferred from expression pattern /// 0006120 // mitochondrial electron transport, NADH to ubiquinone // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007568 // aging // inferred from direct assay /// 0009790 // embryo development // inferred from expression pattern /// 0021549 // cerebellum development // inferred from expression pattern /// 0022900 // electron transport chain // inferred from electronic annotation /// 0042773 // ATP synthesis coupled electron transport // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005747 // mitochondrial respiratory chain complex I // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1385439_x_at BF417541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417541 /DB_XREF=gi:11405530 /DB_XREF=UI-R-CN0-blp-c-09-0-UI.s1 /CLONE=UI-R-CN0-blp-c-09-0-UI /FEA=EST /CNT=1 /TID=Rn.16550.2 /TIER=ConsEnd /STK=1 /UG=Rn.16550 /UG_TITLE=ESTs BF417541 DEXH (Asp-Glu-X-His) box polypeptide 58 Dhx58 303538 NM_001098788 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1385440_at BF419129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419129 /DB_XREF=gi:11407118 /DB_XREF=UI-R-BJ2-bqn-h-05-0-UI.s1 /CLONE=UI-R-BJ2-bqn-h-05-0-UI /FEA=EST /CNT=1 /TID=Rn.63476.1 /TIER=ConsEnd /STK=1 /UG=Rn.63476 /UG_TITLE=EST, Moderately similar to T08788 hypothetical protein DKFZp586C1522.1 (H.sapiens) BF419129 hematopoietic cell signal transducer Hcst 474146 NM_001005900 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1385441_at AW524266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524266 /DB_XREF=gi:7166651 /DB_XREF=UI-R-BO0-aig-c-10-0-UI.s1 /CLONE=UI-R-BO0-aig-c-10-0-UI /FEA=EST /CNT=1 /TID=Rn.67735.1 /TIER=ConsEnd /STK=1 /UG=Rn.67735 /UG_TITLE=EST, Moderately similar to S35302 B-cell protein 8HS-20 precursor - mouse (M.musculus) AW524266 pre-B lymphocyte 3 Vpreb3 365550 NM_001108930 1385442_at AW529552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529552 /DB_XREF=gi:7171966 /DB_XREF=UI-R-BT1-akl-f-01-0-UI.s1 /CLONE=UI-R-BT1-akl-f-01-0-UI /FEA=EST /CNT=1 /TID=Rn.67976.1 /TIER=ConsEnd /STK=1 /UG=Rn.67976 /UG_TITLE=EST AW529552 1385443_at AI549299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549299 /DB_XREF=gi:4466787 /DB_XREF=UI-R-C3-ty-a-06-0-UI.s1 /CLONE=UI-R-C3-ty-a-06-0-UI /FEA=EST /CNT=1 /TID=Rn.74384.1 /TIER=ConsEnd /STK=1 /UG=Rn.74384 /UG_TITLE=EST AI549299 MAX-like protein X Mlx 360631 NM_001034112 0006913 // nucleocytoplasmic transport // not recorded /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 1385444_at AI071994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071994 /DB_XREF=gi:3398188 /DB_XREF=UI-R-C2-nd-b-05-0-UI.s1 /CLONE=UI-R-C2-nd-b-05-0-UI /FEA=EST /CNT=1 /TID=Rn.20692.1 /TIER=ConsEnd /STK=1 /UG=Rn.20692 /UG_TITLE=EST AI071994 Dickkopf homolog 2 (Xenopus laevis) Dkk2 295445 NM_001106472 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 1385445_at BE119167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119167 /DB_XREF=gi:8511272 /DB_XREF=UI-R-CA0-azz-c-07-0-UI.s1 /CLONE=UI-R-CA0-azz-c-07-0-UI /FEA=EST /CNT=1 /TID=Rn.75158.1 /TIER=ConsEnd /STK=1 /UG=Rn.75158 /UG_TITLE=EST BE119167 1385446_at AA866240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866240 /DB_XREF=gi:4229112 /DB_XREF=UI-R-A0-bg-g-05-0-UI.s1 /CLONE=UI-R-A0-bg-g-05-0-UI /FEA=EST /CNT=1 /TID=Rn.32167.1 /TIER=ConsEnd /STK=1 /UG=Rn.32167 /UG_TITLE=EST AA866240 1385447_at BE102219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102219 /DB_XREF=gi:8494318 /DB_XREF=UI-R-BT1-aqf-h-06-0-UI.s1 /CLONE=UI-R-BT1-aqf-h-06-0-UI /FEA=EST /CNT=1 /TID=Rn.50239.1 /TIER=ConsEnd /STK=1 /UG=Rn.50239 /UG_TITLE=EST BE102219 similar to RIKEN cDNA 1700010M22 RGD1308385 311491 NM_001107785 0008152 // metabolic process // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0032934 // sterol binding // inferred from electronic annotation 1385448_at BE112763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112763 /DB_XREF=gi:8504868 /DB_XREF=UI-R-BJ1-avo-e-07-0-UI.s1 /CLONE=UI-R-BJ1-avo-e-07-0-UI /FEA=EST /CNT=1 /TID=Rn.69241.1 /TIER=ConsEnd /STK=1 /UG=Rn.69241 /UG_TITLE=EST, Weakly similar to ATS5_MOUSE ADAM-TS 5 PRECURSOR (A DISINTEGRIN AND METALLOPROTEINASE WITH THROMBOSPONDIN MOTIFS 5) (ADAMTS-5) (ADAM-TS5) (AGGRECANASE-2) (ADMP-2) (IMPLANTIN) (M.musculus) BE112763 ADAMTS-like 5 Adamtsl5 314626 NM_001108071 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1385449_s_at BE115334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115334 /DB_XREF=gi:8507439 /DB_XREF=UI-R-BJ1-avr-a-12-0-UI.s1 /CLONE=UI-R-BJ1-avr-a-12-0-UI /FEA=EST /CNT=1 /TID=Rn.69344.1 /TIER=ConsEnd /STK=1 /UG=Rn.69344 /UG_TITLE=EST BE115334 vacuolar protein sorting 37 homolog B (S. cerevisiae) Vps37b 288659 NM_001105928 1385450_at AI454706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454706 /DB_XREF=gi:4295601 /DB_XREF=UI-R-C2p-qj-a-01-0-UI.s1 /CLONE=UI-R-C2p-qj-a-01-0-UI /FEA=EST /CNT=1 /TID=Rn.35090.1 /TIER=ConsEnd /STK=1 /UG=Rn.35090 /UG_TITLE=EST AI454706 urocortin 2 Ucn2 170896 NM_133385 0006171 // cAMP biosynthetic process // inferred from electronic annotation /// 0006171 // cAMP biosynthetic process // not recorded /// 0006171 // cAMP biosynthetic process // inferred from sequence or structural similarity /// 0006950 // response to stress // inferred from expression pattern /// 0008283 // cell proliferation // inferred from direct assay /// 0032277 // negative regulation of gonadotropin secretion // inferred from mutant phenotype /// 0042246 // tissue regeneration // traceable author statement /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay 0001664 // G-protein-coupled receptor binding // inferred from electronic annotation /// 0001664 // G-protein-coupled receptor binding // not recorded /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // inferred from sequence or structural similarity /// 0005179 // hormone activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042562 // hormone binding // inferred from electronic annotation /// 0042562 // hormone binding // not recorded 1385451_at BF420260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420260 /DB_XREF=gi:11408249 /DB_XREF=UI-R-BJ2-bpk-g-08-0-UI.s1 /CLONE=UI-R-BJ2-bpk-g-08-0-UI /FEA=EST /CNT=1 /TID=Rn.63696.1 /TIER=ConsEnd /STK=1 /UG=Rn.63696 /UG_TITLE=EST, Weakly similar to ALPHA-2,8-SIALYLTRANSFERASE (R.norvegicus) BF420260 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 St8sia4 116696 NM_053914 0006486 // protein glycosylation // inferred from electronic annotation /// 0007162 // negative regulation of cell adhesion // traceable author statement 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation 0003828 // alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity // inferred from electronic annotation /// 0008373 // sialyltransferase activity // traceable author statement /// 0008373 // sialyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1385452_at AI172585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172585 /DB_XREF=gi:3712625 /DB_XREF=UI-R-C2p-oh-b-03-0-UI.s1 /CLONE=UI-R-C2p-oh-b-03-0-UI /FEA=EST /CNT=1 /TID=Rn.23743.1 /TIER=ConsEnd /STK=1 /UG=Rn.23743 /UG_TITLE=EST, Highly similar to S34968 fibulin, splice form D precursor - mouse (M.musculus) AI172585 fibulin 1 Fbln1 315191 NM_001127547 0007566 // embryo implantation // inferred from expression pattern /// 0010952 // positive regulation of peptidase activity // not recorded /// 0030198 // extracellular matrix organization // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016504 // peptidase activator activity // not recorded 1385453_at AI145167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145167 /DB_XREF=gi:3666966 /DB_XREF=UI-R-BT0-pt-f-08-0-UI.s1 /CLONE=UI-R-BT0-pt-f-08-0-UI /FEA=EST /CNT=1 /TID=Rn.23179.3 /TIER=ConsEnd /STK=1 /UG=Rn.23179 /UG_TITLE=ESTs AI145167 zinc finger protein 536 Znf536 292820 XM_001077206 /// XM_218522 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1385454_at AW526025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526025 /DB_XREF=gi:7168410 /DB_XREF=UI-R-BO1-aiy-d-08-0-UI.s1 /CLONE=UI-R-BO1-aiy-d-08-0-UI /FEA=EST /CNT=1 /TID=Rn.67781.1 /TIER=ConsEnd /STK=1 /UG=Rn.67781 /UG_TITLE=EST, Weakly similar to S21348 probable pol polyprotein-related protein 4 - rat (R.norvegicus) AW526025 1385455_at BF397666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397666 /DB_XREF=gi:11382650 /DB_XREF=UI-R-BS2-bed-b-11-0-UI.s1 /CLONE=UI-R-BS2-bed-b-11-0-UI /FEA=EST /CNT=1 /TID=Rn.70810.1 /TIER=ConsEnd /STK=1 /UG=Rn.70810 /UG_TITLE=EST BF397666 PRP38 pre-mRNA processing factor 38 (yeast) domain containing B Prpf38b 499691 NM_001024305 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation 1385456_at AA955079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955079 /DB_XREF=gi:4237908 /DB_XREF=UI-R-A1-ey-h-12-0-UI.s1 /CLONE=UI-R-A1-ey-h-12-0-UI /FEA=EST /CNT=1 /TID=Rn.8812.1 /TIER=ConsEnd /STK=1 /UG=Rn.8812 /UG_TITLE=EST AA955079 1385457_x_at AI715357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715357 /DB_XREF=gi:5032610 /DB_XREF=UI-R-Y0-abo-e-04-0-UI.s1 /CLONE=UI-R-Y0-abo-e-04-0-UI /FEA=EST /CNT=1 /TID=Rn.33232.2 /TIER=ConsEnd /STK=1 /UG=Rn.33232 /UG_TITLE=ESTs AI715357 1385458_a_at AA799992 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799992 /DB_XREF=gi:2862947 /DB_XREF=EST189489 /CLONE=RHEAI02 /FEA=EST /CNT=1 /TID=Rn.40386.3 /TIER=ConsEnd /STK=1 /UG=Rn.40386 /UG_TITLE=ESTs AA799992 similar to C11orf17 protein RGD1306959 361624 NM_001108497 0005515 // protein binding // not recorded 1385459_at AA799992 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799992 /DB_XREF=gi:2862947 /DB_XREF=EST189489 /CLONE=RHEAI02 /FEA=EST /CNT=1 /TID=Rn.40386.3 /TIER=ConsEnd /STK=1 /UG=Rn.40386 /UG_TITLE=ESTs AA799992 similar to C11orf17 protein RGD1306959 361624 NM_001108497 0005515 // protein binding // not recorded 1385460_at AA956464 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956464 /DB_XREF=gi:4238938 /DB_XREF=UI-R-E1-fm-c-05-0-UI.s1 /CLONE=UI-R-E1-fm-c-05-0-UI /FEA=EST /CNT=1 /TID=Rn.42784.2 /TIER=ConsEnd /STK=1 /UG=Rn.42784 /UG_TITLE=ESTs, Weakly similar to LIS1 MOUSE PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB ALPHA SUBUNIT (R.norvegicus) AA956464 WD repeat and SOCS box-containing 2 Wsb2 288692 NM_001007616 0023034 // intracellular signaling pathway // inferred from electronic annotation 1385461_at AW529460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529460 /DB_XREF=gi:7171874 /DB_XREF=UI-R-BT1-akk-e-09-0-UI.s1 /CLONE=UI-R-BT1-akk-e-09-0-UI /FEA=EST /CNT=1 /TID=Rn.67973.1 /TIER=ConsEnd /STK=1 /UG=Rn.67973 /UG_TITLE=EST, Moderately similar to S16788 probable reverse transcriptase - rat (R.norvegicus) AW529460 1385462_at AI555657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555657 /DB_XREF=gi:4488020 /DB_XREF=UI-R-C2p-ra-b-06-0-UI.s1 /CLONE=UI-R-C2p-ra-b-06-0-UI /FEA=EST /CNT=1 /TID=Rn.39280.1 /TIER=ConsEnd /STK=1 /UG=Rn.39280 /UG_TITLE=EST AI555657 mitogen activated protein kinase kinase kinase kinase 2 Map4k2 293694 NM_001106329 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006903 // vesicle targeting // not recorded /// 0007243 // intracellular protein kinase cascade // not recorded 0005737 // cytoplasm // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1385463_at AI043627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043627 /DB_XREF=gi:3290362 /DB_XREF=UI-R-C0-jl-a-11-0-UI.s1 /CLONE=UI-R-C0-jl-a-11-0-UI /FEA=EST /CNT=1 /TID=Rn.18677.1 /TIER=ConsEnd /STK=1 /UG=Rn.18677 /UG_TITLE=EST AI043627 1385464_at AI070944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070944 /DB_XREF=gi:3397195 /DB_XREF=UI-R-C2-na-b-02-0-UI.s1 /CLONE=UI-R-C2-na-b-02-0-UI /FEA=EST /CNT=1 /TID=Rn.19889.1 /TIER=ConsEnd /STK=1 /UG=Rn.19889 /UG_TITLE=EST AI070944 Forkhead box Q1 Foxq1 64826 NM_022858 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1385465_at BG379188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379188 /DB_XREF=gi:13303660 /DB_XREF=UI-R-BT1-bnl-b-03-0-UI.s1 /CLONE=UI-R-BT1-bnl-b-03-0-UI /FEA=EST /CNT=1 /TID=Rn.66655.1 /TIER=ConsEnd /STK=1 /UG=Rn.66655 /UG_TITLE=EST BG379188 sialic acid binding Ig-like lectin 5 Siglec5 292843 NM_001106249 0005529 // sugar binding // inferred from electronic annotation /// 0048029 // monosaccharide binding // not recorded 1385466_at AI146067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146067 /DB_XREF=gi:3667866 /DB_XREF=UI-R-BT0-qg-g-12-0-UI.s1 /CLONE=UI-R-BT0-qg-g-12-0-UI /FEA=EST /CNT=1 /TID=Rn.28723.1 /TIER=ConsEnd /STK=1 /UG=Rn.28723 /UG_TITLE=EST AI146067 UBA domain containing 2 Ubac2 361094 NM_001034937 1385467_at BF388485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388485 /DB_XREF=gi:11373309 /DB_XREF=UI-R-CA1-bda-a-12-0-UI.s1 /CLONE=UI-R-CA1-bda-a-12-0-UI /FEA=EST /CNT=1 /TID=Rn.56762.1 /TIER=ConsEnd /STK=1 /UG=Rn.56762 /UG_TITLE=EST BF388485 1385468_at BF411864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411864 /DB_XREF=gi:11399853 /DB_XREF=UI-R-BT1-bmr-c-02-0-UI.s1 /CLONE=UI-R-BT1-bmr-c-02-0-UI /FEA=EST /CNT=1 /TID=Rn.61946.1 /TIER=ConsEnd /STK=1 /UG=Rn.61946 /UG_TITLE=EST, Highly similar to NPA1 MOUSE NEURONAL PAS DOMAIN PROTEIN 1 (M.musculus) BF411864 neuronal PAS domain protein 1 Npas1 308387 NM_001107479 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007610 // behavior // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1385469_at BI276370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276370 /DB_XREF=gi:14921191 /DB_XREF=UI-R-CW0-bwp-d-05-0-UI.s1 /CLONE=UI-R-CW0-bwp-d-05-0-UI /FEA=EST /CNT=1 /TID=Rn.77572.1 /TIER=ConsEnd /STK=1 /UG=Rn.77572 /UG_TITLE=EST BI276370 insulin-like growth factor 2 mRNA binding protein 1 Igf2bp1 303477 NM_175594 0006403 // RNA localization // inferred from mutant phenotype /// 0006417 // regulation of translation // inferred from electronic annotation /// 0010610 // regulation of mRNA stability involved in response to stress // not recorded /// 0010610 // regulation of mRNA stability involved in response to stress // inferred from sequence or structural similarity /// 0010610 // regulation of mRNA stability involved in response to stress // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0017148 // negative regulation of translation // not recorded /// 0070934 // CRD-mediated mRNA stabilization // inferred from electronic annotation /// 0070934 // CRD-mediated mRNA stabilization // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0010494 // stress granule // not recorded /// 0010494 // stress granule // inferred from sequence or structural similarity /// 0010494 // stress granule // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0030425 // dendrite // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0070937 // CRD-mediated mRNA stability complex // not recorded /// 0070937 // CRD-mediated mRNA stability complex // inferred from sequence or structural similarity /// 0070937 // CRD-mediated mRNA stability complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0003729 // mRNA binding // inferred from sequence or structural similarity /// 0003729 // mRNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0003730 // mRNA 3'-UTR binding // not recorded /// 0003730 // mRNA 3'-UTR binding // inferred from sequence or structural similarity /// 0003730 // mRNA 3'-UTR binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0045182 // translation regulator activity // inferred from electronic annotation /// 0045182 // translation regulator activity // not recorded /// 0048027 // mRNA 5'-UTR binding // inferred from electronic annotation /// 0048027 // mRNA 5'-UTR binding // not recorded 1385470_at AI045606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045606 /DB_XREF=gi:3292425 /DB_XREF=UI-R-C1-ka-a-11-0-UI.s1 /CLONE=UI-R-C1-ka-a-11-0-UI /FEA=EST /CNT=1 /TID=Rn.20900.1 /TIER=ConsEnd /STK=1 /UG=Rn.20900 /UG_TITLE=EST AI045606 1385471_at BF396345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396345 /DB_XREF=gi:11381317 /DB_XREF=UI-R-BS2-bdx-a-11-0-UI.s1 /CLONE=UI-R-BS2-bdx-a-11-0-UI /FEA=EST /CNT=1 /TID=Rn.70655.1 /TIER=ConsEnd /STK=1 /UG=Rn.70655 /UG_TITLE=EST BF396345 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 Ddx27 362274 NM_001135801 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1385472_at AA963583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963583 /DB_XREF=gi:4278486 /DB_XREF=UI-R-E1-gn-e-02-0-UI.s1 /CLONE=UI-R-E1-gn-e-02-0-UI /FEA=EST /CNT=1 /TID=Rn.11586.1 /TIER=ConsEnd /STK=1 /UG=Rn.11586 /UG_TITLE=EST AA963583 zinc finger and BTB domain containing 8a Zbtb8a 313049 NM_001107913 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385473_x_at AI044497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044497 /DB_XREF=gi:3291358 /DB_XREF=UI-R-C1-jw-g-08-0-UI.s1 /CLONE=UI-R-C1-jw-g-08-0-UI /FEA=EST /CNT=1 /TID=Rn.20759.2 /TIER=ConsEnd /STK=1 /UG=Rn.20759 /UG_TITLE=ESTs AI044497 translocase of outer mitochondrial membrane 40 homolog B (yeast) Tomm40b 304971 NM_001083338 0006810 // transport // inferred from electronic annotation /// 0006820 // anion transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0008308 // voltage-gated anion channel activity // inferred from electronic annotation 1385474_at BF416362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416362 /DB_XREF=gi:11404351 /DB_XREF=UI-R-CA0-bkj-f-12-0-UI.s1 /CLONE=UI-R-CA0-bkj-f-12-0-UI /FEA=EST /CNT=1 /TID=Rn.62999.1 /TIER=ConsEnd /STK=1 /UG=Rn.62999 /UG_TITLE=EST, Moderately similar to Z294_HUMAN ZINC FINGER PROTEIN 294 (H.sapiens) BF416362 ring finger protein 160 Rnf160 288308 NM_001024235 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385475_a_at AI030451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030451 /DB_XREF=gi:3248277 /DB_XREF=UI-R-C0-ji-e-08-0-UI.s1 /CLONE=UI-R-C0-ji-e-08-0-UI /FEA=EST /CNT=1 /TID=Rn.12735.2 /TIER=ConsEnd /STK=1 /UG=Rn.12735 /UG_TITLE=ESTs AI030451 stimulated by retinoic acid gene 6 Stra6 363071 NM_001029924 0006810 // transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0004872 // receptor activity // inferred from electronic annotation 1385476_x_at AI030451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030451 /DB_XREF=gi:3248277 /DB_XREF=UI-R-C0-ji-e-08-0-UI.s1 /CLONE=UI-R-C0-ji-e-08-0-UI /FEA=EST /CNT=1 /TID=Rn.12735.2 /TIER=ConsEnd /STK=1 /UG=Rn.12735 /UG_TITLE=ESTs AI030451 stimulated by retinoic acid gene 6 Stra6 363071 NM_001029924 0006810 // transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0004872 // receptor activity // inferred from electronic annotation 1385477_at BE102379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102379 /DB_XREF=gi:8494478 /DB_XREF=UI-R-BT1-aql-h-03-0-UI.s1 /CLONE=UI-R-BT1-aql-h-03-0-UI /FEA=EST /CNT=1 /TID=Rn.50284.1 /TIER=ConsEnd /STK=1 /UG=Rn.50284 /UG_TITLE=EST BE102379 similar to RIKEN cDNA 1700054O13 RGD1563155 367734 NM_001134598 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1385478_at BF410579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410579 /DB_XREF=gi:11398554 /DB_XREF=UI-R-CA0-bma-d-07-0-UI.s1 /CLONE=UI-R-CA0-bma-d-07-0-UI /FEA=EST /CNT=1 /TID=Rn.71673.1 /TIER=ConsEnd /STK=1 /UG=Rn.71673 /UG_TITLE=EST, Moderately similar to RBMA_RAT RNA-BINDING PROTEIN 10 (RNA BINDING MOTIF PROTEIN 10) (S1-1 PROTEIN) (R.norvegicus) BF410579 RNA binding motif protein 10 Rbm10 64510 NM_152861 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016585 // chromatin remodeling complex // not recorded /// 0016585 // chromatin remodeling complex // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385479_at BF411549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411549 /DB_XREF=gi:11399538 /DB_XREF=UI-R-BT1-bmt-d-05-0-UI.s1 /CLONE=UI-R-BT1-bmt-d-05-0-UI /FEA=EST /CNT=1 /TID=Rn.71745.1 /TIER=ConsEnd /STK=1 /UG=Rn.71745 /UG_TITLE=EST BF411549 similar to hypothetical protein 4932418E24 RGD1565512 499759 NM_001134617 1385480_at AI111860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111860 /DB_XREF=gi:3511809 /DB_XREF=UI-R-Y0-mp-e-05-0-UI.s1 /CLONE=UI-R-Y0-mp-e-05-0-UI /FEA=EST /CNT=1 /TID=Rn.26662.1 /TIER=ConsEnd /STK=1 /UG=Rn.26662 /UG_TITLE=EST, Weakly similar to T19428 hypothetical protein C24H11.6 - Caenorhabditis elegans (C.elegans) AI111860 rCG61688-like LOC100359529 100359529 XM_002726737 /// XM_002729645 0006508 // proteolysis // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008236 // serine-type peptidase activity // inferred from electronic annotation 1385481_at AW526551 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526551 /DB_XREF=gi:7168965 /DB_XREF=UI-R-BO1-ajc-d-04-0-UI.s1 /CLONE=UI-R-BO1-ajc-d-04-0-UI /FEA=EST /CNT=1 /TID=Rn.46232.1 /TIER=ConsEnd /STK=1 /UG=Rn.46232 /UG_TITLE=EST AW526551 dermatan sulfate epimerase-like Dsel 297865 XM_001058721 /// XM_232716 0008146 // sulfotransferase activity // inferred from electronic annotation 1385482_at BI293434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293434 /DB_XREF=gi:14954922 /DB_XREF=UI-R-DK0-cdq-d-09-0-UI.s1 /CLONE=UI-R-DK0-cdq-d-09-0-UI /FEA=EST /CNT=1 /TID=Rn.79435.1 /TIER=ConsEnd /STK=1 /UG=Rn.79435 /UG_TITLE=EST BI293434 1385483_at BF400949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400949 /DB_XREF=gi:11388924 /DB_XREF=UI-R-CA0-bgg-g-09-0-UI.s1 /CLONE=UI-R-CA0-bgg-g-09-0-UI /FEA=EST /CNT=1 /TID=Rn.59682.1 /TIER=ConsEnd /STK=1 /UG=Rn.59682 /UG_TITLE=EST BF400949 V-set and immunoglobulin domain containing 8 Vsig8 289236 NM_001105972 1385484_s_at BE110831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110831 /DB_XREF=gi:8502936 /DB_XREF=UI-R-BJ1-aus-e-03-0-UI.s1 /CLONE=UI-R-BJ1-aus-e-03-0-UI /FEA=EST /CNT=1 /TID=Rn.65993.1 /TIER=ConsEnd /STK=1 /UG=Rn.65993 /UG_TITLE=EST BE110831 1385485_x_at BE110831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110831 /DB_XREF=gi:8502936 /DB_XREF=UI-R-BJ1-aus-e-03-0-UI.s1 /CLONE=UI-R-BJ1-aus-e-03-0-UI /FEA=EST /CNT=1 /TID=Rn.65993.1 /TIER=ConsEnd /STK=1 /UG=Rn.65993 /UG_TITLE=EST BE110831 1385486_at AW534737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534737 /DB_XREF=gi:7177151 /DB_XREF=UI-R-BS0-anv-d-11-0-UI.s1 /CLONE=UI-R-BS0-anv-d-11-0-UI /FEA=EST /CNT=1 /TID=Rn.48381.1 /TIER=ConsEnd /STK=1 /UG=Rn.48381 /UG_TITLE=EST AW534737 basonuclin 2 Bnc2 298189 NM_001106666 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1385487_at AW530957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530957 /DB_XREF=gi:7173371 /DB_XREF=UI-R-BT1-akt-a-03-0-UI.s1 /CLONE=UI-R-BT1-akt-a-03-0-UI /FEA=EST /CNT=1 /TID=Rn.47589.1 /TIER=ConsEnd /STK=1 /UG=Rn.47589 /UG_TITLE=EST AW530957 LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) Lsm1 364624 NM_001108876 0071044 // histone mRNA catabolic process // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded 1385488_at BE114851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114851 /DB_XREF=gi:8506956 /DB_XREF=UI-R-BJ1-awq-b-02-0-UI.s1 /CLONE=UI-R-BJ1-awq-b-02-0-UI /FEA=EST /CNT=1 /TID=Rn.52436.1 /TIER=ConsEnd /STK=1 /UG=Rn.52436 /UG_TITLE=EST BE114851 dehydrogenase/reductase (SDR family) member 4 Dhrs4 266686 NM_153315 0008152 // metabolic process // inferred from electronic annotation /// 0042574 // retinal metabolic process // inferred from electronic annotation /// 0042574 // retinal metabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005777 // peroxisome // inferred from mutant phenotype /// 0005777 // peroxisome // not recorded /// 0005777 // peroxisome // inferred from electronic annotation 0001758 // retinal dehydrogenase activity // inferred from electronic annotation /// 0001758 // retinal dehydrogenase activity // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004090 // carbonyl reductase (NADPH) activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1385489_at BI291076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291076 /DB_XREF=gi:14950282 /DB_XREF=UI-R-DK0-cgf-b-10-0-UI.s1 /CLONE=UI-R-DK0-cgf-b-10-0-UI /FEA=EST /CNT=1 /TID=Rn.79220.1 /TIER=ConsEnd /STK=1 /UG=Rn.79220 /UG_TITLE=EST BI291076 Septin 3 Sept3 56003 NM_019375 0007049 // cell cycle // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0031105 // septin complex // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation 1385490_at AW529441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529441 /DB_XREF=gi:7171855 /DB_XREF=UI-R-BT1-akk-c-12-0-UI.s1 /CLONE=UI-R-BT1-akk-c-12-0-UI /FEA=EST /CNT=1 /TID=Rn.47200.1 /TIER=ConsEnd /STK=1 /UG=Rn.47200 /UG_TITLE=EST AW529441 similar to Protein EAN57 LOC686841 686841 NM_001044289 1385491_at BF403514 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403514 /DB_XREF=gi:11391489 /DB_XREF=UI-R-CA1-biz-j-22-0-UI.s1 /CLONE=UI-R-CA1-biz-j-22-0-UI /FEA=EST /CNT=1 /TID=Rn.71186.1 /TIER=ConsEnd /STK=1 /UG=Rn.71186 /UG_TITLE=EST, Weakly similar to JC7357 31K proliferation related acidic leucine-rich protein - rat (R.norvegicus) BF403514 PNMA-like 2 Pnmal2 308393 NM_001107481 1385492_at AW524862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524862 /DB_XREF=gi:7167247 /DB_XREF=UI-R-BO0-aid-b-07-0-UI.s1 /CLONE=UI-R-BO0-aid-b-07-0-UI /FEA=EST /CNT=1 /TID=Rn.74471.1 /TIER=ConsEnd /STK=1 /UG=Rn.74471 /UG_TITLE=EST AW524862 neuropilin (NRP) and tolloid (TLL)-like 1 Neto1 307206 NM_001107371 0007613 // memory // not recorded /// 0008542 // visual learning // not recorded /// 0048169 // regulation of long-term neuronal synaptic plasticity // not recorded 0014069 // postsynaptic density // not recorded /// 0060076 // excitatory synapse // not recorded 0005515 // protein binding // not recorded 1385493_at AI639237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639237 /DB_XREF=gi:4700271 /DB_XREF=rz00717s /CLONE=rz00717 /FEA=EST /CNT=1 /TID=Rn.43315.1 /TIER=ConsEnd /STK=1 /UG=Rn.43315 /UG_TITLE=EST AI639237 THO complex 2 Thoc2 313308 NM_001191756 /// XM_001058768 /// XM_233081 0006406 // mRNA export from nucleus // not recorded /// 0046784 // intronless viral mRNA export from host nucleus // not recorded 0000346 // transcription export complex // not recorded /// 0000347 // THO complex // not recorded /// 0000445 // THO complex part of transcription export complex // not recorded 0005515 // protein binding // not recorded 1385494_at BM390350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390350 /DB_XREF=gi:18190403 /DB_XREF=UI-R-CN1-cjq-o-20-0-UI.s1 /CLONE=UI-R-CN1-cjq-o-20-0-UI /FEA=EST /CNT=1 /TID=Rn.82432.1 /TIER=ConsEnd /STK=1 /UG=Rn.82432 /UG_TITLE=EST BM390350 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1385495_at AI704220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI704220 /DB_XREF=gi:4992120 /DB_XREF=UI-R-AC0-ym-b-05-0-UI.s1 /CLONE=UI-R-AC0-ym-b-05-0-UI /FEA=EST /CNT=1 /TID=Rn.67201.1 /TIER=ConsEnd /STK=1 /UG=Rn.67201 /UG_TITLE=EST AI704220 NFKB activating protein Nkap 298342 NM_001024872 0006350 // transcription // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0046638 // positive regulation of alpha-beta T cell differentiation // not recorded /// 0046638 // positive regulation of alpha-beta T cell differentiation // inferred from sequence or structural similarity /// 0046638 // positive regulation of alpha-beta T cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from electronic annotation 1385496_at AI043653 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043653 /DB_XREF=gi:3290388 /DB_XREF=UI-R-C0-jl-f-09-0-UI.s1 /CLONE=UI-R-C0-jl-f-09-0-UI /FEA=EST /CNT=1 /TID=Rn.21666.2 /TIER=ConsEnd /STK=1 /UG=Rn.21666 /UG_TITLE=ESTs AI043653 coiled-coil domain containing 127 Ccdc127 308060 NM_198766 1385497_x_at AW522661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522661 /DB_XREF=gi:7165046 /DB_XREF=UI-R-BO0-ahl-c-11-0-UI.s1 /CLONE=UI-R-BO0-ahl-c-11-0-UI /FEA=EST /CNT=1 /TID=Rn.45451.1 /TIER=ConsEnd /STK=1 /UG=Rn.45451 /UG_TITLE=EST AW522661 ligand of numb-protein X 1 Lnx1 360926 NM_001108358 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded /// 0051260 // protein homooligomerization // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // not recorded /// 0030165 // PDZ domain binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385498_at AA848859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848859 /DB_XREF=gi:2936399 /DB_XREF=EST191620 /CLONE=RLUAH26 /FEA=EST /CNT=1 /TID=Rn.55926.1 /TIER=ConsEnd /STK=1 /UG=Rn.55926 /UG_TITLE=ESTs AA848859 rhomboid domain containing 1 Rhbdd1 316557 NM_001024891 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1385499_at AI029352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029352 /DB_XREF=gi:4297980 /DB_XREF=UI-R-C0-ir-b-08-0-UI.s1 /CLONE=UI-R-C0-ir-b-08-0-UI /FEA=EST /CNT=1 /TID=Rn.33268.1 /TIER=ConsEnd /STK=1 /UG=Rn.33268 /UG_TITLE=EST AI029352 kelch-like 35 (Drosophila) Klhl35 308850 XM_002725697 /// XM_218953 0005515 // protein binding // inferred from electronic annotation 1385500_at BF400284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400284 /DB_XREF=gi:11385295 /DB_XREF=UI-R-CA1-bjc-n-15-0-UI.s1 /CLONE=UI-R-CA1-bjc-n-15-0-UI /FEA=EST /CNT=1 /TID=Rn.59584.1 /TIER=ConsEnd /STK=1 /UG=Rn.59584 /UG_TITLE=EST BF400284 similar to RIKEN cDNA 1700012B09 RGD1561795 500945 NM_001109289 1385501_at AI072998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072998 /DB_XREF=gi:3399192 /DB_XREF=UI-R-Y0-md-b-08-0-UI.s1 /CLONE=UI-R-Y0-md-b-08-0-UI /FEA=EST /CNT=1 /TID=Rn.21832.1 /TIER=ConsEnd /STK=1 /UG=Rn.21832 /UG_TITLE=EST AI072998 1385502_at AI071868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071868 /DB_XREF=gi:3398083 /DB_XREF=UI-R-C2-nh-g-12-0-UI.s1 /CLONE=UI-R-C2-nh-g-12-0-UI /FEA=EST /CNT=1 /TID=Rn.22010.1 /TIER=ConsEnd /STK=1 /UG=Rn.22010 /UG_TITLE=EST AI071868 Tripartite motif-containing 21 Trim21 308901 NM_001082572 0000209 // protein polyubiquitination // not recorded /// 0006513 // protein monoubiquitination // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0031648 // protein destabilization // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0045787 // positive regulation of cell cycle // not recorded /// 0051865 // protein autoubiquitination // not recorded /// 0070206 // protein trimerization // not recorded /// 0090086 // negative regulation of protein deubiquitination // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0019005 // SCF ubiquitin ligase complex // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385503_at BM387442 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387442 /DB_XREF=gi:18187495 /DB_XREF=UI-R-CN1-cjj-e-06-0-UI.s1 /CLONE=UI-R-CN1-cjj-e-06-0-UI /FEA=EST /CNT=1 /TID=Rn.31078.3 /TIER=ConsEnd /STK=1 /UG=Rn.31078 /UG_TITLE=ESTs BM387442 similar to O-acetyltransferase LOC678772 678772 XM_001053100 1385504_at AW524664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524664 /DB_XREF=gi:7167049 /DB_XREF=UI-R-BO0-aib-a-02-0-UI.s1 /CLONE=UI-R-BO0-aib-a-02-0-UI /FEA=EST /CNT=1 /TID=Rn.67752.1 /TIER=ConsEnd /STK=1 /UG=Rn.67752 /UG_TITLE=EST AW524664 ring finger and FYVE like domain containing protein Rffl 282844 NM_001004068 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0006915 // apoptosis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385505_at AI072068 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072068 /DB_XREF=gi:3398262 /DB_XREF=UI-R-C2-nf-b-08-0-UI.s1 /CLONE=UI-R-C2-nf-b-08-0-UI /FEA=EST /CNT=1 /TID=Rn.23518.3 /TIER=ConsEnd /STK=1 /UG=Rn.23518 /UG_TITLE=ESTs AI072068 1385506_at AW530507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530507 /DB_XREF=gi:7172921 /DB_XREF=UI-R-C4-akx-h-07-0-UI.s1 /CLONE=UI-R-C4-akx-h-07-0-UI /FEA=EST /CNT=1 /TID=Rn.74577.1 /TIER=ConsEnd /STK=1 /UG=Rn.74577 /UG_TITLE=EST AW530507 1385507_at AA962944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA962944 /DB_XREF=gi:4277915 /DB_XREF=UI-R-E1-fx-e-03-0-UI.s1 /CLONE=UI-R-E1-fx-e-03-0-UI /FEA=EST /CNT=1 /TID=Rn.36053.2 /TIER=ConsEnd /STK=1 /UG=Rn.36053 /UG_TITLE=ESTs AA962944 1385508_x_at AA962944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA962944 /DB_XREF=gi:4277915 /DB_XREF=UI-R-E1-fx-e-03-0-UI.s1 /CLONE=UI-R-E1-fx-e-03-0-UI /FEA=EST /CNT=1 /TID=Rn.36053.2 /TIER=ConsEnd /STK=1 /UG=Rn.36053 /UG_TITLE=ESTs AA962944 1385509_at AI601967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI601967 /DB_XREF=gi:4611128 /DB_XREF=UI-R-Y0-uv-c-03-0-UI.s2 /CLONE=UI-R-Y0-uv-c-03-0-UI /FEA=EST /CNT=1 /TID=Rn.40228.1 /TIER=ConsEnd /STK=1 /UG=Rn.40228 /UG_TITLE=EST AI601967 1385510_at BG378965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378965 /DB_XREF=gi:13303437 /DB_XREF=UI-R-BT1-bng-d-11-0-UI.s1 /CLONE=UI-R-BT1-bng-d-11-0-UI /FEA=EST /CNT=1 /TID=Rn.66617.1 /TIER=ConsEnd /STK=1 /UG=Rn.66617 /UG_TITLE=EST BG378965 tubulin tyrosine ligase-like family, member 13 Ttll13 308762 NM_001134962 0006464 // protein modification process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004835 // tubulin-tyrosine ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1385511_at BE103003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103003 /DB_XREF=gi:8495102 /DB_XREF=UI-R-BT1-aqr-b-07-0-UI.s1 /CLONE=UI-R-BT1-aqr-b-07-0-UI /FEA=EST /CNT=1 /TID=Rn.68720.1 /TIER=ConsEnd /STK=1 /UG=Rn.68720 /UG_TITLE=EST BE103003 seizure related 6 homolog (mouse)-like Sez6l 304554 NM_001134538 1385512_at AW526908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526908 /DB_XREF=gi:7169322 /DB_XREF=UI-R-BO1-ajf-d-10-0-UI.s1 /CLONE=UI-R-BO1-ajf-d-10-0-UI /FEA=EST /CNT=1 /TID=Rn.23085.3 /TIER=ConsEnd /STK=1 /UG=Rn.23085 /UG_TITLE=ESTs, Weakly similar to KIAA0943 protein (Homo sapiens) (H.sapiens) AW526908 ATG4 autophagy related 4 homolog D (S. cerevisiae) Atg4d 686505 NM_001101013 0006810 // transport // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1385513_at AI112764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112764 /DB_XREF=gi:3512713 /DB_XREF=UI-R-Y0-mj-g-01-0-UI.s1 /CLONE=UI-R-Y0-mj-g-01-0-UI /FEA=EST /CNT=1 /TID=Rn.26838.1 /TIER=ConsEnd /STK=1 /UG=Rn.26838 /UG_TITLE=EST AI112764 1385514_at AW524271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524271 /DB_XREF=gi:7166656 /DB_XREF=UI-R-BO0-aig-d-05-0-UI.s1 /CLONE=UI-R-BO0-aig-d-05-0-UI /FEA=EST /CNT=1 /TID=Rn.45815.1 /TIER=ConsEnd /STK=1 /UG=Rn.45815 /UG_TITLE=EST AW524271 zinc finger CCCH type containing 14 Zc3h14 192359 NM_001033951 /// NM_138920 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385515_at BG379920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379920 /DB_XREF=gi:13304392 /DB_XREF=UI-R-CS0-btk-g-10-0-UI.s1 /CLONE=UI-R-CS0-btk-g-10-0-UI /FEA=EST /CNT=1 /TID=Rn.66704.1 /TIER=ConsEnd /STK=1 /UG=Rn.66704 /UG_TITLE=EST BG379920 adenosine A3 receptor /// Adora3 protein-like Adora3 /// LOC100363178 100363178 /// 25370 NM_012896 /// XM_002729100 0001973 // adenosine receptor signaling pathway // inferred from electronic annotation /// 0001973 // adenosine receptor signaling pathway // not recorded /// 0002553 // histamine secretion by mast cell // inferred from electronic annotation /// 0002553 // histamine secretion by mast cell // not recorded /// 0002687 // positive regulation of leukocyte migration // inferred from electronic annotation /// 0002687 // positive regulation of leukocyte migration // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0014061 // regulation of norepinephrine secretion // inferred from mutant phenotype /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0043306 // positive regulation of mast cell degranulation // inferred from electronic annotation /// 0043306 // positive regulation of mast cell degranulation // not recorded /// 0050729 // positive regulation of inflammatory response // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // not recorded /// 0050850 // positive regulation of calcium-mediated signaling // inferred from electronic annotation /// 0050850 // positive regulation of calcium-mediated signaling // not recorded /// 0070257 // positive regulation of mucus secretion // inferred from electronic annotation /// 0070257 // positive regulation of mucus secretion // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay 0001609 // adenosine receptor activity, G-protein coupled // inferred from direct assay /// 0001609 // adenosine receptor activity, G-protein coupled // not recorded /// 0001609 // adenosine receptor activity, G-protein coupled // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1385516_at AI030975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030975 /DB_XREF=gi:3248801 /DB_XREF=UI-R-C0-jf-h-06-0-UI.s1 /CLONE=UI-R-C0-jf-h-06-0-UI /FEA=EST /CNT=1 /TID=Rn.21649.2 /TIER=ConsEnd /STK=1 /UG=Rn.21649 /UG_TITLE=ESTs AI030975 1385517_at AI715835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715835 /DB_XREF=gi:5033088 /DB_XREF=UI-R-Y0-abx-g-03-0-UI.s1 /CLONE=UI-R-Y0-abx-g-03-0-UI /FEA=EST /CNT=1 /TID=Rn.67330.1 /TIER=ConsEnd /STK=1 /UG=Rn.67330 /UG_TITLE=EST, Highly similar to T03763 BAP-135 protein homolog - mouse (M.musculus) AI715835 general transcription factor II I Gtf2i 353256 NM_001001512 0006350 // transcription // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051481 // reduction of cytosolic calcium ion concentration // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0042995 // cell projection // not recorded /// 0043025 // neuronal cell body // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051019 // mitogen-activated protein kinase binding // not recorded 1385518_at BI289329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289329 /DB_XREF=gi:14946781 /DB_XREF=UI-R-DK0-cfl-e-05-0-UI.s1 /CLONE=UI-R-DK0-cfl-e-05-0-UI /FEA=EST /CNT=1 /TID=Rn.79022.1 /TIER=ConsEnd /STK=1 /UG=Rn.79022 /UG_TITLE=EST BI289329 similar to RIKEN cDNA 2310042D19 RGD1304931 313776 NM_001108001 1385519_at BE105678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105678 /DB_XREF=gi:8497780 /DB_XREF=UI-R-BX0-arx-g-02-0-UI.s1 /CLONE=UI-R-BX0-arx-g-02-0-UI /FEA=EST /CNT=1 /TID=Rn.68851.1 /TIER=ConsEnd /STK=1 /UG=Rn.68851 /UG_TITLE=EST BE105678 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) Runx1t1 362489 NM_001108657 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0045444 // fat cell differentiation // not recorded /// 0051101 // regulation of DNA binding // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1385520_at AW524783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524783 /DB_XREF=gi:7167168 /DB_XREF=UI-R-BO0-ahy-c-07-0-UI.s1 /CLONE=UI-R-BO0-ahy-c-07-0-UI /FEA=EST /CNT=1 /TID=Rn.45922.1 /TIER=ConsEnd /STK=1 /UG=Rn.45922 /UG_TITLE=ESTs, Highly similar to T46442 hypothetical protein DKFZp434F2427.1 (H.sapiens) AW524783 1385521_at AI603505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI603505 /DB_XREF=gi:4612666 /DB_XREF=UI-R-AF0-xz-c-02-0-UI.s1 /CLONE=UI-R-AF0-xz-c-02-0-UI /FEA=EST /CNT=1 /TID=Rn.74051.2 /TIER=ConsEnd /STK=1 /UG=Rn.74051 /UG_TITLE=ESTs AI603505 1385522_at AI059490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059490 /DB_XREF=gi:3333267 /DB_XREF=UI-R-C1-lg-f-07-0-UI.s1 /CLONE=UI-R-C1-lg-f-07-0-UI /FEA=EST /CNT=1 /TID=Rn.21094.1 /TIER=ConsEnd /STK=1 /UG=Rn.21094 /UG_TITLE=EST, Moderately similar to ORC1_HUMAN ORIGIN RECOGNITION COMPLEX SUBUNIT 1 (H.sapiens) AI059490 origin recognition complex, subunit 1-like (yeast) Orc1l 313479 NM_177931 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded 0000808 // origin recognition complex // inferred from electronic annotation /// 0000808 // origin recognition complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1385523_at BI283507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283507 /DB_XREF=gi:14935320 /DB_XREF=UI-R-CZ0-bzc-b-11-0-UI.s1 /CLONE=UI-R-CZ0-bzc-b-11-0-UI /FEA=EST /CNT=1 /TID=Rn.78393.1 /TIER=ConsEnd /STK=1 /UG=Rn.78393 /UG_TITLE=EST BI283507 1385524_at AA925969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925969 /DB_XREF=gi:4237160 /DB_XREF=UI-R-A1-eo-c-11-0-UI.s1 /CLONE=UI-R-A1-eo-c-11-0-UI /FEA=EST /CNT=1 /TID=Rn.32710.1 /TIER=ConsEnd /STK=1 /UG=Rn.32710 /UG_TITLE=EST AA925969 family with sequence similarity 184, member A Fam184a 361853 XR_085738 /// XR_086152 1385525_at AI029991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029991 /DB_XREF=gi:3247817 /DB_XREF=UI-R-C0-jr-f-12-0-UI.s1 /CLONE=UI-R-C0-jr-f-12-0-UI /FEA=EST /CNT=1 /TID=Rn.65496.1 /TIER=ConsEnd /STK=1 /UG=Rn.65496 /UG_TITLE=ESTs AI029991 C-type lectin domain family 1, member b Clec1b 500336 NM_001191978 /// XM_001068837 /// XM_575687 0005887 // integral to plasma membrane // not recorded 0005488 // binding // inferred from electronic annotation 1385526_at AA956721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956721 /DB_XREF=gi:4239195 /DB_XREF=UI-R-E1-fo-b-09-0-UI.s1 /CLONE=UI-R-E1-fo-b-09-0-UI /FEA=EST /CNT=1 /TID=Rn.9070.2 /TIER=ConsEnd /STK=1 /UG=Rn.9070 /UG_TITLE=ESTs AA956721 ATG5 autophagy related 5 homolog (S. cerevisiae) Atg5 365601 NM_001014250 0000045 // autophagic vacuole assembly // inferred from mutant phenotype /// 0000045 // autophagic vacuole assembly // not recorded /// 0000045 // autophagic vacuole assembly // inferred from electronic annotation /// 0001974 // blood vessel remodeling // not recorded /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0006914 // autophagy // not recorded /// 0031397 // negative regulation of protein ubiquitination // not recorded /// 0031397 // negative regulation of protein ubiquitination // inferred from electronic annotation /// 0042311 // vasodilation // not recorded /// 0042311 // vasodilation // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043687 // post-translational protein modification // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0055015 // ventricular cardiac muscle cell development // not recorded /// 0055015 // ventricular cardiac muscle cell development // inferred from electronic annotation /// 0060047 // heart contraction // not recorded /// 0060047 // heart contraction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005776 // autophagic vacuole // not recorded /// 0005776 // autophagic vacuole // inferred from electronic annotation /// 0034045 // pre-autophagosomal structure membrane // not recorded /// 0034045 // pre-autophagosomal structure membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1385527_at AA955194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955194 /DB_XREF=gi:4234277 /DB_XREF=UI-R-A1-du-c-11-0-UI.s1 /CLONE=UI-R-A1-du-c-11-0-UI /FEA=EST /CNT=1 /TID=Rn.32749.1 /TIER=ConsEnd /STK=1 /UG=Rn.32749 /UG_TITLE=EST, Highly similar to UBP7_HUMAN UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 7 (H.sapiens) AA955194 ubiquitin specific peptidase 7 (herpes virus-associated) Usp7 360471 NM_001024790 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016579 // protein deubiquitination // inferred from direct assay /// 0016579 // protein deubiquitination // not recorded /// 0016579 // protein deubiquitination // inferred from sequence or structural similarity /// 0031647 // regulation of protein stability // inferred from direct assay /// 0051090 // regulation of transcription factor activity // not recorded /// 0051090 // regulation of transcription factor activity // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0002039 // p53 binding // not recorded /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0004221 // ubiquitin thiolesterase activity // inferred from sequence or structural similarity /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0004843 // ubiquitin-specific protease activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay 1385528_at BE114779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114779 /DB_XREF=gi:8506884 /DB_XREF=UI-R-BJ1-awp-c-02-0-UI.s1 /CLONE=UI-R-BJ1-awp-c-02-0-UI /FEA=EST /CNT=1 /TID=Rn.69324.1 /TIER=ConsEnd /STK=1 /UG=Rn.69324 /UG_TITLE=EST, Weakly similar to (Segment 2 of 3) PHOSPHORYLASE B KINASE ALPHA REGULATORY CHAIN, SKELETAL MUSCLE ISOFORM (R.norvegicus) BE114779 phosphorylase kinase, alpha 2 Phka2 678739 NM_001190994 /// XM_001053483 /// XM_001053550 /// XM_002727556 /// XM_002727557 0005976 // polysaccharide metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation 0005964 // phosphorylase kinase complex // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004339 // glucan 1,4-alpha-glucosidase activity // inferred from electronic annotation /// 0004689 // phosphorylase kinase activity // inferred from direct assay /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1385529_at BF411402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411402 /DB_XREF=gi:11399384 /DB_XREF=UI-R-CN0-bmk-a-02-0-UI.s1 /CLONE=UI-R-CN0-bmk-a-02-0-UI /FEA=EST /CNT=1 /TID=Rn.75927.1 /TIER=ConsEnd /STK=1 /UG=Rn.75927 /UG_TITLE=EST, Weakly similar to OIT1 MOUSE ONCOPROTEIN INDUCED PROTEIN 1 (M.musculus) BF411402 family with sequence similarity 3, member B Fam3b 304050 NM_001107102 0030073 // insulin secretion // not recorded 1385530_at AI136430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136430 /DB_XREF=gi:3637207 /DB_XREF=UI-R-C2p-ns-a-11-0-UI.s1 /CLONE=UI-R-C2p-ns-a-11-0-UI /FEA=EST /CNT=1 /TID=Rn.73757.1 /TIER=ConsEnd /STK=1 /UG=Rn.73757 /UG_TITLE=ESTs AI136430 1385531_at BI281524 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281524 /DB_XREF=gi:14931345 /DB_XREF=UI-R-DD0-bzv-a-11-0-UI.s1 /CLONE=UI-R-DD0-bzv-a-11-0-UI /FEA=EST /CNT=1 /TID=Rn.78209.1 /TIER=ConsEnd /STK=1 /UG=Rn.78209 /UG_TITLE=EST, Moderately similar to PRCE RAT PROTEASOME EPSILON CHAIN PRECURSOR (R.norvegicus) BI281524 proteasome (prosome, macropain) subunit, beta type 5 Psmb5 29425 NM_001105727 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005839 // proteasome core complex // inferred from electronic annotation /// 0005839 // proteasome core complex // not recorded 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1385532_x_at BI281524 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281524 /DB_XREF=gi:14931345 /DB_XREF=UI-R-DD0-bzv-a-11-0-UI.s1 /CLONE=UI-R-DD0-bzv-a-11-0-UI /FEA=EST /CNT=1 /TID=Rn.78209.1 /TIER=ConsEnd /STK=1 /UG=Rn.78209 /UG_TITLE=EST, Moderately similar to PRCE RAT PROTEASOME EPSILON CHAIN PRECURSOR (R.norvegicus) BI281524 proteasome (prosome, macropain) subunit, beta type 5 Psmb5 29425 NM_001105727 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005839 // proteasome core complex // inferred from electronic annotation /// 0005839 // proteasome core complex // not recorded 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1385533_at BE106145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106145 /DB_XREF=gi:8498247 /DB_XREF=UI-R-BX0-ase-e-07-0-UI.s1 /CLONE=UI-R-BX0-ase-e-07-0-UI /FEA=EST /CNT=1 /TID=Rn.50882.1 /TIER=ConsEnd /STK=1 /UG=Rn.50882 /UG_TITLE=EST BE106145 1385534_at BG381021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381021 /DB_XREF=gi:13305493 /DB_XREF=UI-R-CT0-bug-c-06-0-UI.s1 /CLONE=UI-R-CT0-bug-c-06-0-UI /FEA=EST /CNT=1 /TID=Rn.66791.1 /TIER=ConsEnd /STK=1 /UG=Rn.66791 /UG_TITLE=EST BG381021 nerve growth factor receptor (TNFRSF16) associated protein 1 Ngfrap1 117089 NM_053401 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0008625 // induction of apoptosis via death domain receptors // inferred from electronic annotation /// 0008625 // induction of apoptosis via death domain receptors // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005123 // death receptor binding // inferred from electronic annotation /// 0005123 // death receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043028 // caspase regulator activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1385535_at AA866223 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866223 /DB_XREF=gi:4229095 /DB_XREF=UI-R-A0-bg-e-08-0-UI.s1 /CLONE=UI-R-A0-bg-e-08-0-UI /FEA=EST /CNT=1 /TID=Rn.3003.1 /TIER=ConsEnd /STK=1 /UG=Rn.3003 /UG_TITLE=EST AA866223 1385536_at AI454433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454433 /DB_XREF=gi:4293692 /DB_XREF=UI-R-A0-aq-h-03-0-UI.s1 /CLONE=UI-R-A0-aq-h-03-0-UI /FEA=EST /CNT=1 /TID=Rn.73810.1 /TIER=ConsEnd /STK=1 /UG=Rn.73810 /UG_TITLE=EST AI454433 1385537_at AI412800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412800 /DB_XREF=gi:4256304 /DB_XREF=EST241100 /CLONE=RBRDQ29 /FEA=EST /CNT=1 /TID=Rn.24322.2 /TIER=ConsEnd /STK=1 /UG=Rn.24322 /UG_TITLE=ESTs, Highly similar to Ppar binding protein; TRAP 220 (Mus musculus) (M.musculus) AI412800 1385538_at AI059209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059209 /DB_XREF=gi:3332986 /DB_XREF=UI-R-C1-lb-e-08-0-UI.s1 /CLONE=UI-R-C1-lb-e-08-0-UI /FEA=EST /CNT=1 /TID=Rn.21054.1 /TIER=ConsEnd /STK=1 /UG=Rn.21054 /UG_TITLE=EST AI059209 1385539_at AI556222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556222 /DB_XREF=gi:4488585 /DB_XREF=UI-R-C2p-rb-c-12-0-UI.s1 /CLONE=UI-R-C2p-rb-c-12-0-UI /FEA=EST /CNT=1 /TID=Rn.74014.1 /TIER=ConsEnd /STK=1 /UG=Rn.74014 /UG_TITLE=EST AI556222 1385540_at AI044916 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044916 /DB_XREF=gi:3291735 /DB_XREF=UI-R-C1-kk-f-04-0-UI.s1 /CLONE=UI-R-C1-kk-f-04-0-UI /FEA=EST /CNT=1 /TID=Rn.16058.2 /TIER=ConsEnd /STK=1 /UG=Rn.16058 /UG_TITLE=ESTs AI044916 Protein inhibitor of activated STAT, 1 Pias1 300772 NM_001106829 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0033235 // positive regulation of protein sumoylation // not recorded /// 0033235 // positive regulation of protein sumoylation // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from mutant phenotype /// 0051152 // positive regulation of smooth muscle cell differentiation // inferred from mutant phenotype /// 0065004 // protein-DNA complex assembly // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019789 // SUMO ligase activity // not recorded /// 0019789 // SUMO ligase activity // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation 1385541_at AA819776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819776 /DB_XREF=gi:4228035 /DB_XREF=UI-R-A0-ap-h-07-0-UI.s1 /CLONE=UI-R-A0-ap-h-07-0-UI /FEA=EST /CNT=1 /TID=Rn.42416.1 /TIER=ConsEnd /STK=1 /UG=Rn.42416 /UG_TITLE=ESTs, Weakly similar to HS9B RAT HEAT SHOCK PROTEIN HSP 90-BETA (R.norvegicus) AA819776 heat shock protein 90, alpha (cytosolic), class A member 1 Hsp90aa1 299331 NM_175761 0001764 // neuron migration // inferred from mutant phenotype /// 0006457 // protein folding // traceable author statement /// 0006457 // protein folding // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0009408 // response to heat // inferred from expression pattern /// 0009651 // response to salt stress // inferred from expression pattern /// 0010592 // positive regulation of lamellipodium assembly // inferred from mutant phenotype /// 0034619 // cellular chaperone-mediated protein complex assembly // not recorded /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045429 // positive regulation of nitric oxide biosynthetic process // not recorded /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from sequence or structural similarity /// 0050790 // regulation of catalytic activity // not recorded /// 0070096 // mitochondrial outer membrane translocase complex assembly // not recorded 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0030235 // nitric-oxide synthase regulator activity // not recorded /// 0030235 // nitric-oxide synthase regulator activity // inferred from sequence or structural similarity /// 0030911 // TPR domain binding // not recorded /// 0030911 // TPR domain binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // not recorded /// 0051082 // unfolded protein binding // traceable author statement /// 0051082 // unfolded protein binding // inferred from electronic annotation 1385542_at BF402259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402259 /DB_XREF=gi:11390234 /DB_XREF=UI-R-CA0-bhq-d-02-0-UI.s1 /CLONE=UI-R-CA0-bhq-d-02-0-UI /FEA=EST /CNT=5 /TID=Rn.53409.1 /TIER=ConsEnd /STK=0 /UG=Rn.53409 /UG_TITLE=ESTs BF402259 1385543_at BF413374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413374 /DB_XREF=gi:11401363 /DB_XREF=UI-R-CA0-boe-d-01-0-UI.s1 /CLONE=UI-R-CA0-boe-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.63370.1 /TIER=ConsEnd /STK=0 /UG=Rn.63370 /UG_TITLE=ESTs BF413374 1385544_at AI712921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712921 /DB_XREF=gi:5016721 /DB_XREF=UI-R-Y0-abb-b-02-0-UI.s1 /CLONE=UI-R-Y0-abb-b-02-0-UI /FEA=EST /CNT=4 /TID=Rn.19714.1 /TIER=ConsEnd /STK=0 /UG=Rn.19714 /UG_TITLE=ESTs AI712921 neural retina leucine zipper Nrl 290221 NM_001106036 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007468 // regulation of rhodopsin gene expression // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045872 // positive regulation of rhodopsin gene expression // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046548 // retinal rod cell development // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1385545_at BF403922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403922 /DB_XREF=gi:11391897 /DB_XREF=UI-R-CA1-bjd-h-11-0-UI.s1 /CLONE=UI-R-CA1-bjd-h-11-0-UI /FEA=EST /CNT=4 /TID=Rn.61602.1 /TIER=ConsEnd /STK=0 /UG=Rn.61602 /UG_TITLE=ESTs BF403922 Kruppel-like factor 12 Klf12 306110 NM_001107281 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1385546_at AA998195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998195 /DB_XREF=gi:4288180 /DB_XREF=UI-R-C0-ib-b-03-0-UI.s1 /CLONE=UI-R-C0-ib-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.12902.1 /TIER=ConsEnd /STK=0 /UG=Rn.12902 /UG_TITLE=ESTs, Weakly similar to S37694 gene PC326 protein - mouse (M.musculus) AA998195 DDB1 and CUL4 associated factor 6 Dcaf6 289181 XM_001071288 /// XM_002724885 /// XM_002728021 /// XM_213926 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0080008 // CUL4 RING ubiquitin ligase complex // not recorded 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded 1385547_at AW522439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522439 /DB_XREF=gi:7164824 /DB_XREF=UI-R-BO0-ahv-e-11-0-UI.s1 /CLONE=UI-R-BO0-ahv-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.45393.3 /TIER=ConsEnd /STK=0 /UG=Rn.45393 /UG_TITLE=ESTs AW522439 ermin, ERM-like protein Ermn 295619 NM_001008311 0001763 // morphogenesis of a branching structure // inferred from electronic annotation /// 0001763 // morphogenesis of a branching structure // not recorded /// 0007015 // actin filament organization // inferred from electronic annotation /// 0007015 // actin filament organization // not recorded /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0031344 // regulation of cell projection organization // inferred from electronic annotation /// 0031344 // regulation of cell projection organization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030175 // filopodium // inferred from electronic annotation /// 0030175 // filopodium // not recorded /// 0033269 // internode region of axon // inferred from electronic annotation /// 0033269 // internode region of axon // not recorded /// 0033270 // paranode region of axon // inferred from electronic annotation /// 0033270 // paranode region of axon // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043209 // myelin sheath // inferred from electronic annotation /// 0043209 // myelin sheath // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1385548_at AW140348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW140348 /DB_XREF=gi:6160066 /DB_XREF=EST290306 /CLONE=RGIAF27 /FEA=EST /CNT=3 /TID=Rn.24937.3 /TIER=ConsEnd /STK=0 /UG=Rn.24937 /UG_TITLE=ESTs AW140348 ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast) Ube2d1 361831 NM_001108530 0000209 // protein polyubiquitination // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0030509 // BMP signaling pathway // not recorded /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0070936 // protein K48-linked ubiquitination // inferred from sequence or structural similarity 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1385549_at BF413544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413544 /DB_XREF=gi:11401533 /DB_XREF=UI-R-CA0-bof-e-04-0-UI.s1 /CLONE=UI-R-CA0-bof-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.62380.1 /TIER=ConsEnd /STK=0 /UG=Rn.62380 /UG_TITLE=ESTs BF413544 hypothetical protein LOC685964 LOC685964 685964 NM_001109489 1385550_at AI058636 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058636 /DB_XREF=gi:3332413 /DB_XREF=UI-R-C1-ky-g-10-0-UI.s1 /CLONE=UI-R-C1-ky-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.18930.1 /TIER=ConsEnd /STK=0 /UG=Rn.18930 /UG_TITLE=ESTs AI058636 Hermansky-Pudlak syndrome 4 homolog (human) Hps4 304555 NM_001107148 0006605 // protein targeting // not recorded /// 0006996 // organelle organization // inferred from electronic annotation /// 0006996 // organelle organization // not recorded /// 0007040 // lysosome organization // not recorded /// 0007596 // blood coagulation // inferred from electronic annotation /// 0007596 // blood coagulation // not recorded /// 0030318 // melanocyte differentiation // inferred from electronic annotation /// 0030318 // melanocyte differentiation // not recorded /// 0050821 // protein stabilization // not recorded 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // not recorded /// 0005764 // lysosome // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0042470 // melanosome // not recorded /// 0042827 // platelet dense granule // not recorded 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0046983 // protein dimerization activity // not recorded 1385551_at AW141043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141043 /DB_XREF=gi:6160811 /DB_XREF=EST291066 /CLONE=RGIBA09 /FEA=EST /CNT=2 /TID=Rn.65571.2 /TIER=ConsEnd /STK=0 /UG=Rn.65571 /UG_TITLE=ESTs, Highly similar to MHC class Ib RT1.S3 (R.norvegicus) AW141043 H2-GS14-2 antigen LOC100362483 100362483 XR_086145 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 1385552_at BG668477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668477 /DB_XREF=gi:13890399 /DB_XREF=DRACMH11 /CLONE=DRACMH11 /FEA=EST /CNT=2 /TID=Rn.74135.1 /TIER=ConsEnd /STK=0 /UG=Rn.74135 /UG_TITLE=ESTs BG668477 1385553_at AI136699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136699 /DB_XREF=gi:3637476 /DB_XREF=UI-R-C2p-nq-g-11-0-UI.s1 /CLONE=UI-R-C2p-nq-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.27215.1 /TIER=ConsEnd /STK=0 /UG=Rn.27215 /UG_TITLE=ESTs, Weakly similar to CIRP MOUSE COLD-INDUCIBLE RNA-BINDING PROTEIN (R.norvegicus) AI136699 phosphatidylinositol glycan anchor biosynthesis, class Z Pigz 689116 NM_001109525 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from electronic annotation /// 0006370 // mRNA capping // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006408 // snRNA export from nucleus // inferred from sequence or structural similarity /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // inferred from electronic annotation /// 0006506 // GPI anchor biosynthetic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from sequence or structural similarity /// 0008380 // RNA splicing // inferred from electronic annotation /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0046833 // positive regulation of RNA export from nucleus // inferred from sequence or structural similarity /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005845 // mRNA cap binding complex // inferred from electronic annotation 0000026 // alpha-1,2-mannosyltransferase activity // not recorded /// 0000030 // mannosyltransferase activity // not recorded /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0000340 // RNA 7-methylguanosine cap binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1385554_at AI548264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548264 /DB_XREF=gi:4465752 /DB_XREF=UI-R-C3-ti-e-04-0-UI.s1 /CLONE=UI-R-C3-ti-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.44117.1 /TIER=ConsEnd /STK=0 /UG=Rn.44117 /UG_TITLE=ESTs AI548264 1385555_at AA924444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924444 /DB_XREF=gi:4234583 /DB_XREF=UI-R-A1-dy-d-04-0-UI.s1 /CLONE=UI-R-A1-dy-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.15321.1 /TIER=ConsEnd /STK=0 /UG=Rn.15321 /UG_TITLE=ESTs AA924444 family with sequence similarity 101, member A Fam101a 689711 NM_001109547 1385556_at AW521143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521143 /DB_XREF=gi:7163521 /DB_XREF=UI-R-BO0-agp-g-06-0-UI.s1 /CLONE=UI-R-BO0-agp-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.73006.1 /TIER=ConsEnd /STK=0 /UG=Rn.73006 /UG_TITLE=ESTs AW521143 similar to KIAA0467 protein RGD1308616 362573 XM_001069457 /// XM_342892 1385557_at AA925349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925349 /DB_XREF=gi:4236540 /DB_XREF=UI-R-A1-ee-b-06-0-UI.s1 /CLONE=UI-R-A1-ee-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.15505.1 /TIER=ConsEnd /STK=0 /UG=Rn.15505 /UG_TITLE=ESTs AA925349 1385558_at AW532330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532330 /DB_XREF=gi:7174744 /DB_XREF=UI-R-BT1-akc-c-01-0-UI.s1 /CLONE=UI-R-BT1-akc-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.47927.1 /TIER=ConsEnd /STK=0 /UG=Rn.47927 /UG_TITLE=ESTs AW532330 1385559_at BF562977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562977 /DB_XREF=gi:11672707 /DB_XREF=UI-R-BO0-aih-f-02-0-UI.r1 /CLONE=UI-R-BO0-aih-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.45719.1 /TIER=ConsEnd /STK=0 /UG=Rn.45719 /UG_TITLE=ESTs BF562977 similar to RIKEN cDNA A030009H04 RGD1563441 497935 NM_001126292 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385560_at AI716213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716213 /DB_XREF=gi:5033466 /DB_XREF=UI-R-Y0-abr-a-09-0-UI.s1 /CLONE=UI-R-Y0-abr-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.40879.1 /TIER=ConsEnd /STK=0 /UG=Rn.40879 /UG_TITLE=ESTs AI716213 1385561_at BF561031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561031 /DB_XREF=gi:11670761 /DB_XREF=UI-R-E1-fj-h-02-0-UI.r1 /CLONE=UI-R-E1-fj-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.72741.1 /TIER=ConsEnd /STK=0 /UG=Rn.72741 /UG_TITLE=ESTs, Weakly similar to TERA RAT TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (R.norvegicus) BF561031 peroxisomal biogenesis factor 1 Pex1 500006 NM_001109220 0006625 // protein targeting to peroxisome // not recorded /// 0007031 // peroxisome organization // inferred from electronic annotation /// 0007031 // peroxisome organization // not recorded /// 0016558 // protein import into peroxisome matrix // not recorded /// 0060152 // microtubule-based peroxisome localization // not recorded 0005737 // cytoplasm // not recorded /// 0005777 // peroxisome // inferred from electronic annotation /// 0005777 // peroxisome // not recorded /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0032403 // protein complex binding // not recorded /// 0042623 // ATPase activity, coupled // not recorded 1385562_at AI059487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059487 /DB_XREF=gi:3333264 /DB_XREF=UI-R-C1-lg-f-04-0-UI.s1 /CLONE=UI-R-C1-lg-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.19188.1 /TIER=ConsEnd /STK=0 /UG=Rn.19188 /UG_TITLE=ESTs AI059487 junctophilin 3 Jph3 307916 NM_001107437 0040011 // locomotion // not recorded 0005792 // microsome // not recorded 1385563_at AA900591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900591 /DB_XREF=gi:4233083 /DB_XREF=UI-R-E0-dn-c-09-0-UI.s1 /CLONE=UI-R-E0-dn-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.15086.1 /TIER=ConsEnd /STK=0 /UG=Rn.15086 /UG_TITLE=ESTs AA900591 1385564_at AW527799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527799 /DB_XREF=gi:7170178 /DB_XREF=UI-R-BT1-ajy-h-07-0-UI.s1 /CLONE=UI-R-BT1-ajy-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.72953.1 /TIER=ConsEnd /STK=0 /UG=Rn.72953 /UG_TITLE=ESTs, Weakly similar to ZYX MOUSE ZYXIN (M.musculus) AW527799 LIM domain containing preferred translocation partner in lipoma Lpp 288010 NM_001013864 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0030054 // cell junction // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385565_at BF564080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564080 /DB_XREF=gi:11673810 /DB_XREF=UI-R-C4-ald-b-07-0-UI.r1 /CLONE=UI-R-C4-ald-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.47370.1 /TIER=ConsEnd /STK=0 /UG=Rn.47370 /UG_TITLE=ESTs, Highly similar to T30845 probable DNA repair protein RAD50 - mouse (M.musculus) BF564080 RAD50 homolog (S. cerevisiae) Rad50 64012 NM_022246 0000019 // regulation of mitotic recombination // not recorded /// 0000019 // regulation of mitotic recombination // inferred from sequence or structural similarity /// 0000075 // cell cycle checkpoint // traceable author statement /// 0000723 // telomere maintenance // traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006281 // DNA repair // not recorded /// 0006281 // DNA repair // inferred from sequence or structural similarity /// 0006302 // double-strand break repair // not recorded /// 0006302 // double-strand break repair // inferred from sequence or structural similarity /// 0006302 // double-strand break repair // traceable author statement /// 0006310 // DNA recombination // not recorded /// 0006310 // DNA recombination // inferred from sequence or structural similarity /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007004 // telomere maintenance via telomerase // not recorded /// 0007004 // telomere maintenance via telomerase // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from electronic annotation /// 0007126 // meiosis // inferred from electronic annotation /// 0007131 // reciprocal meiotic recombination // traceable author statement /// 0031954 // positive regulation of protein autophosphorylation // not recorded /// 0032508 // DNA duplex unwinding // not recorded /// 0033674 // positive regulation of kinase activity // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0000784 // nuclear chromosome, telomeric region // not recorded /// 0000790 // nuclear chromatin // inferred from direct assay /// 0000794 // condensed nuclear chromosome // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from direct assay /// 0016234 // inclusion body // inferred from direct assay /// 0030870 // Mre11 complex // inferred from electronic annotation /// 0030870 // Mre11 complex // not recorded /// 0030870 // Mre11 complex // inferred from sequence or structural similarity /// 0030870 // Mre11 complex // traceable author statement /// 0045120 // pronucleus // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000014 // single-stranded DNA specific endodeoxyribonuclease activity // not recorded /// 0000014 // single-stranded DNA specific endodeoxyribonuclease activity // inferred from sequence or structural similarity /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0004003 // ATP-dependent DNA helicase activity // not recorded /// 0004518 // nuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008408 // 3'-5' exonuclease activity // not recorded /// 0008408 // 3'-5' exonuclease activity // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030674 // protein binding, bridging // not recorded /// 0030674 // protein binding, bridging // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1385566_at AI072144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072144 /DB_XREF=gi:3398338 /DB_XREF=UI-R-C2-mz-c-09-0-UI.s1 /CLONE=UI-R-C2-mz-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.21728.2 /TIER=ConsEnd /STK=0 /UG=Rn.21728 /UG_TITLE=ESTs AI072144 A kinase (PRKA) anchor protein 2 Akap2 298024 NM_001011974 0007015 // actin filament organization // not recorded /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // not recorded /// 0008104 // protein localization // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0051018 // protein kinase A binding // not recorded 1385567_at AA955573 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955573 /DB_XREF=gi:4237968 /DB_XREF=UI-R-E1-fa-b-02-0-UI.s1 /CLONE=UI-R-E1-fa-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.37640.3 /TIER=ConsEnd /STK=0 /UG=Rn.37640 /UG_TITLE=ESTs, Highly similar to 1804353A transcription factor RAP74 (H.sapiens) AA955573 general transcription factor IIF, polypeptide 1 Gtf2f1 316123 NM_001007711 0006350 // transcription // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0008380 // RNA splicing // not recorded /// 0009615 // response to virus // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0019211 // phosphatase activator activity // not recorded 1385568_at AW526991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526991 /DB_XREF=gi:7169405 /DB_XREF=UI-R-BO1-ajg-c-09-0-UI.s1 /CLONE=UI-R-BO1-ajg-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.72795.1 /TIER=ConsEnd /STK=0 /UG=Rn.72795 /UG_TITLE=ESTs AW526991 1385569_at BF559640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559640 /DB_XREF=gi:11669370 /DB_XREF=UI-R-C0-gs-e-07-0-UI.r1 /CLONE=UI-R-C0-gs-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.23630.3 /TIER=ConsEnd /STK=0 /UG=Rn.23630 /UG_TITLE=ESTs BF559640 1385570_at AI717105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717105 /DB_XREF=gi:5034361 /DB_XREF=UI-R-Y0-abe-a-09-0-UI.s1 /CLONE=UI-R-Y0-abe-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.41355.1 /TIER=ConsEnd /STK=0 /UG=Rn.41355 /UG_TITLE=ESTs AI717105 rCG31224-like LOC100362283 100362283 XM_002726665 /// XM_002729579 1385571_at AA923865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA923865 /DB_XREF=gi:4233957 /DB_XREF=UI-R-A1-dr-h-02-0-UI.s1 /CLONE=UI-R-A1-dr-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.15232.1 /TIER=ConsEnd /STK=0 /UG=Rn.15232 /UG_TITLE=ESTs AA923865 nuclear antigen Sp100-like LOC100366216 100366216 XM_002727237 0005634 // nucleus // inferred from electronic annotation 1385572_at AI144884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144884 /DB_XREF=gi:3666683 /DB_XREF=UI-R-BT0-pp-a-06-0-UI.s1 /CLONE=UI-R-BT0-pp-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.27718.1 /TIER=ConsEnd /STK=0 /UG=Rn.27718 /UG_TITLE=ESTs AI144884 1385573_at AI070797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070797 /DB_XREF=gi:3397048 /DB_XREF=UI-R-C2-mr-e-12-0-UI.s1 /CLONE=UI-R-C2-mr-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.42817.2 /TIER=ConsEnd /STK=0 /UG=Rn.42817 /UG_TITLE=ESTs AI070797 Homer homolog 3 (Drosophila) Homer3 29548 NM_053310 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded 1385574_at AI501346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501346 /DB_XREF=gi:4399197 /DB_XREF=UI-R-C2p-ru-f-09-0-UI.s1 /CLONE=UI-R-C2p-ru-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.35332.1 /TIER=ConsEnd /STK=0 /UG=Rn.35332 /UG_TITLE=ESTs AI501346 similar to cDNA sequence AF397014 RGD1308114 361253 NM_001014146 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1385575_at BG665058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665058 /DB_XREF=gi:13886980 /DB_XREF=DRABXG05 /CLONE=DRABXG05 /FEA=EST /CNT=2 /TID=Rn.74119.1 /TIER=ConsEnd /STK=0 /UG=Rn.74119 /UG_TITLE=ESTs, Moderately similar to 5,6-DIHYDROXYINDOLE-2-CARBOXYLIC ACID OXIDASE PRECURSOR (M.musculus) BG665058 tyrosinase-related protein 1 Tyrp1 298182 NM_001106664 0006582 // melanin metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0030318 // melanocyte differentiation // not recorded /// 0032438 // melanosome organization // not recorded /// 0042438 // melanin biosynthetic process // inferred from electronic annotation /// 0043438 // acetoacetic acid metabolic process // not recorded /// 0043473 // pigmentation // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0033162 // melanosome membrane // inferred from electronic annotation /// 0042470 // melanosome // not recorded 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016716 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1385576_at AI535506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535506 /DB_XREF=gi:4449641 /DB_XREF=UI-R-C3-sy-h-08-0-UI.s1 /CLONE=UI-R-C3-sy-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.34843.1 /TIER=ConsEnd /STK=0 /UG=Rn.34843 /UG_TITLE=ESTs, Weakly similar to G01000 smoothelin (H.sapiens) AI535506 smoothelin-like 1 Smtnl1 311167 NM_001191739 /// XM_001069604 /// XM_230278 0014823 // response to activity // not recorded /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0042493 // response to drug // not recorded /// 0045907 // positive regulation of vasoconstriction // not recorded /// 0045908 // negative regulation of vasodilation // not recorded /// 0048644 // muscle organ morphogenesis // not recorded 0031430 // M band // not recorded /// 0031674 // I band // not recorded /// 0043292 // contractile fiber // not recorded 1385577_at AW531898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531898 /DB_XREF=gi:7174312 /DB_XREF=UI-R-BS0-amj-f-06-0-UI.s1 /CLONE=UI-R-BS0-amj-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.54172.1 /TIER=ConsEnd /STK=0 /UG=Rn.54172 /UG_TITLE=ESTs AW531898 1385578_at AI511324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511324 /DB_XREF=gi:4417023 /DB_XREF=UI-R-C3-sv-g-12-0-UI.s1 /CLONE=UI-R-C3-sv-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.34688.1 /TIER=ConsEnd /STK=0 /UG=Rn.34688 /UG_TITLE=ESTs AI511324 1385579_at BF560587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF560587 /DB_XREF=gi:11670317 /DB_XREF=UI-R-C0-hv-h-05-0-UI.r2 /CLONE=UI-R-C0-hv-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.37765.2 /TIER=ConsEnd /STK=0 /UG=Rn.37765 /UG_TITLE=ESTs, Moderately similar to P4HA RAT PROLYL 4-HYDROXYLASE ALPHA SUBUNIT PRECURSOR (R.norvegicus) BF560587 Procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III P4ha3 361612 NM_198775 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0016222 // procollagen-proline 4-dioxygenase complex // traceable author statement 0004656 // procollagen-proline 4-dioxygenase activity // inferred from mutant phenotype /// 0004656 // procollagen-proline 4-dioxygenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385580_at AI071620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071620 /DB_XREF=gi:3397835 /DB_XREF=UI-R-C2-mw-c-12-0-UI.s1 /CLONE=UI-R-C2-mw-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.21961.1 /TIER=ConsEnd /STK=0 /UG=Rn.21961 /UG_TITLE=ESTs AI071620 1385581_at BF551187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551187 /DB_XREF=gi:11660917 /DB_XREF=UI-R-C0-hv-d-02-0-UI.r1 /CLONE=UI-R-C0-hv-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.12771.1 /TIER=ConsEnd /STK=0 /UG=Rn.12771 /UG_TITLE=ESTs BF551187 1385582_at AI548374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548374 /DB_XREF=gi:4465862 /DB_XREF=UI-R-C3-te-a-02-0-UI.s1 /CLONE=UI-R-C3-te-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.44119.1 /TIER=ConsEnd /STK=0 /UG=Rn.44119 /UG_TITLE=ESTs, Weakly similar to OXYB_HUMAN OXYSTEROL-BINDING PROTEI (H.sapiens) AI548374 oxysterol binding protein-like 2 Osbpl2 296461 NM_001013079 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation 1385583_at AI578193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578193 /DB_XREF=gi:4562569 /DB_XREF=UI-R-Y0-uw-g-11-0-UI.s2 /CLONE=UI-R-Y0-uw-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.38928.1 /TIER=ConsEnd /STK=0 /UG=Rn.38928 /UG_TITLE=ESTs, Highly similar to I49736 monophenol monooxygenase (M.musculus) AI578193 tyrosinase Tyr 308800 NM_001107535 0008152 // metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0042438 // melanin biosynthetic process // not recorded /// 0042438 // melanin biosynthetic process // traceable author statement /// 0043473 // pigmentation // inferred from mutant phenotype /// 0043473 // pigmentation // not recorded /// 0048538 // thymus development // not recorded 0005737 // cytoplasm // not recorded /// 0042470 // melanosome // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0004503 // monophenol monooxygenase activity // inferred from mutant phenotype /// 0004503 // monophenol monooxygenase activity // not recorded /// 0005507 // copper ion binding // not recorded /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1385584_at AI111406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111406 /DB_XREF=gi:3511448 /DB_XREF=UI-R-Y0-mk-f-04-0-UI.s1 /CLONE=UI-R-Y0-mk-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.23544.1 /TIER=ConsEnd /STK=0 /UG=Rn.23544 /UG_TITLE=ESTs AI111406 1385585_at AI111674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111674 /DB_XREF=gi:3511623 /DB_XREF=UI-R-Y0-mk-g-07-0-UI.s1 /CLONE=UI-R-Y0-mk-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.21134.2 /TIER=ConsEnd /STK=0 /UG=Rn.21134 /UG_TITLE=ESTs AI111674 1385586_at AA965077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965077 /DB_XREF=gi:4279951 /DB_XREF=UI-R-C0-gz-a-10-0-UI.s1 /CLONE=UI-R-C0-gz-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.23295.1 /TIER=ConsEnd /STK=0 /UG=Rn.23295 /UG_TITLE=ESTs AA965077 transmembrane protein 8C Tmem8c 296601 NM_001134517 1385587_at AI555000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555000 /DB_XREF=gi:4487363 /DB_XREF=UI-R-C2p-qu-f-02-0-UI.s1 /CLONE=UI-R-C2p-qu-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.35113.1 /TIER=ConsEnd /STK=0 /UG=Rn.35113 /UG_TITLE=ESTs AI555000 mucolipin 2 Mcoln2 292168 NM_001039005 1385588_at AI715888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715888 /DB_XREF=gi:5033141 /DB_XREF=UI-R-Y0-abv-e-11-0-UI.s1 /CLONE=UI-R-Y0-abv-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.41505.1 /TIER=ConsEnd /STK=0 /UG=Rn.41505 /UG_TITLE=ESTs AI715888 calcium binding protein 4 Cabp4 365394 NM_001108926 0007601 // visual perception // not recorded /// 0007602 // phototransduction // not recorded /// 0008594 // photoreceptor cell morphogenesis // not recorded /// 0046549 // retinal cone cell development // not recorded /// 0060040 // retinal bipolar neuron differentiation // not recorded 0005509 // calcium ion binding // inferred from electronic annotation 1385589_at BI288737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288737 /DB_XREF=gi:14945610 /DB_XREF=UI-R-DK0-cde-d-03-0-UI.s1 /CLONE=UI-R-DK0-cde-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.43989.2 /TIER=ConsEnd /STK=0 /UG=Rn.43989 /UG_TITLE=ESTs BI288737 similar to CG10806-PB, isoform B LOC679958 679958 NM_001109385 0006810 // transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0015299 // solute:hydrogen antiporter activity // inferred from electronic annotation 1385590_at BI296811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296811 /DB_XREF=gi:14961609 /DB_XREF=UI-R-DK0-cfz-f-06-0-UI.s1 /CLONE=UI-R-DK0-cfz-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.79620.1 /TIER=ConsEnd /STK=0 /UG=Rn.79620 /UG_TITLE=ESTs BI296811 1385591_at BI300437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300437 /DB_XREF=gi:14976717 /DB_XREF=UI-R-CV2-cif-a-01-0-UI.s1 /CLONE=UI-R-CV2-cif-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.76756.1 /TIER=ConsEnd /STK=0 /UG=Rn.76756 /UG_TITLE=ESTs BI300437 1385592_at BI289386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289386 /DB_XREF=gi:14946901 /DB_XREF=UI-R-DK0-cfg-d-01-0-UI.s1 /CLONE=UI-R-DK0-cfg-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.79032.1 /TIER=ConsEnd /STK=0 /UG=Rn.79032 /UG_TITLE=ESTs BI289386 BCL6 co-repressor Bcor 317346 NM_001191586 /// XM_002727515 /// XM_002727516 /// XM_002727517 /// XM_002727518 /// XM_002730192 /// XM_002730193 /// XM_002730194 /// XM_002730195 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000415 // negative regulation of histone H3-K36 methylation // not recorded /// 0007507 // heart development // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030502 // negative regulation of bone mineralization // not recorded /// 0042476 // odontogenesis // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0051572 // negative regulation of histone H3-K4 methylation // not recorded /// 0060021 // palate development // not recorded /// 0065001 // specification of axis polarity // not recorded /// 0070171 // negative regulation of tooth mineralization // not recorded 0005634 // nucleus // not recorded /// 0031519 // PcG protein complex // not recorded 0003714 // transcription corepressor activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0010843 // promoter binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0031072 // heat shock protein binding // not recorded /// 0042826 // histone deacetylase binding // not recorded 1385593_at AI060012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060012 /DB_XREF=gi:3333789 /DB_XREF=UI-R-C1-kz-e-05-0-UI.s1 /CLONE=UI-R-C1-kz-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.21167.1 /TIER=ConsEnd /STK=0 /UG=Rn.21167 /UG_TITLE=ESTs AI060012 1385594_at AW144020 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144020 /DB_XREF=gi:6163919 /DB_XREF=EST294316 /CLONE=RGICF46 /FEA=EST /CNT=2 /TID=Rn.8504.3 /TIER=ConsEnd /STK=0 /UG=Rn.8504 /UG_TITLE=ESTs AW144020 1385595_at BE114414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114414 /DB_XREF=gi:8506519 /DB_XREF=UI-R-CA0-axm-a-02-0-UI.s1 /CLONE=UI-R-CA0-axm-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.53701.1 /TIER=ConsEnd /STK=0 /UG=Rn.53701 /UG_TITLE=ESTs, Highly similar to S18666 KIN17 protein - mouse (M.musculus) BE114414 antigenic determinant of rec-A protein homolog (mouse) Kin 689197 NM_001109529 0006260 // DNA replication // not recorded /// 0006974 // response to DNA damage stimulus // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016363 // nuclear matrix // not recorded 0003690 // double-stranded DNA binding // not recorded /// 0003723 // RNA binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1385596_at BF392191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392191 /DB_XREF=gi:11377048 /DB_XREF=UI-R-CA0-bff-c-06-0-UI.s1 /CLONE=UI-R-CA0-bff-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.53251.1 /TIER=ConsEnd /STK=0 /UG=Rn.53251 /UG_TITLE=ESTs, Moderately similar to T46906 hypothetical protein DKFZp761D0223.1 (H.sapiens) BF392191 TBC1 domain family, member 15 Tbc1d15 366896 XM_001078627 /// XM_002726886 /// XM_002729785 /// XM_345825 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1385597_at AI709508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709508 /DB_XREF=gi:4999284 /DB_XREF=UI-R-C3-tn-b-04-0-UI.s1 /CLONE=UI-R-C3-tn-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.76118.1 /TIER=ConsEnd /STK=0 /UG=Rn.76118 /UG_TITLE=ESTs AI709508 zinc finger protein 763 Znf763 314586 NM_001108063 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1385598_at AW522647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522647 /DB_XREF=gi:7165032 /DB_XREF=UI-R-BO0-ahl-b-07-0-UI.s1 /CLONE=UI-R-BO0-ahl-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.45443.1 /TIER=ConsEnd /STK=0 /UG=Rn.45443 /UG_TITLE=ESTs AW522647 1385599_at BF409064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409064 /DB_XREF=gi:11397039 /DB_XREF=UI-R-BT1-bkl-e-12-0-UI.s1 /CLONE=UI-R-BT1-bkl-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.47032.1 /TIER=ConsEnd /STK=0 /UG=Rn.47032 /UG_TITLE=ESTs BF409064 RSA-14-44 protein RSA-14-44 297173 NM_182670 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1385600_at BF404816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404816 /DB_XREF=gi:11392791 /DB_XREF=UI-R-CA1-bic-a-06-0-UI.s1 /CLONE=UI-R-CA1-bic-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.60550.1 /TIER=ConsEnd /STK=0 /UG=Rn.60550 /UG_TITLE=ESTs, Weakly similar to apolipoprotein A-I (Rattus norvegicus) (R.norvegicus) BF404816 1385601_at BE115019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115019 /DB_XREF=gi:8507124 /DB_XREF=UI-R-BJ1-awu-c-09-0-UI.s1 /CLONE=UI-R-BJ1-awu-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.48922.1 /TIER=ConsEnd /STK=0 /UG=Rn.48922 /UG_TITLE=ESTs, Highly similar to FRG1_MOUSE FRG1 protein (M.musculus) BE115019 similar to FRG1 protein (FSHD region gene 1 protein) LOC686103 686103 XM_001066552 1385602_at BF561593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561593 /DB_XREF=gi:11671323 /DB_XREF=UI-R-C0-id-h-06-0-UI.r1 /CLONE=UI-R-C0-id-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.12872.1 /TIER=ConsEnd /STK=0 /UG=Rn.12872 /UG_TITLE=ESTs BF561593 similar to hypothetical protein MGC29761 RGD1306233 296608 NM_001106564 1385603_at AW527147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527147 /DB_XREF=gi:7169561 /DB_XREF=UI-R-BO1-ajm-a-11-0-UI.s1 /CLONE=UI-R-BO1-ajm-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.46435.1 /TIER=ConsEnd /STK=0 /UG=Rn.46435 /UG_TITLE=ESTs AW527147 1385604_at BE108011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108011 /DB_XREF=gi:8500116 /DB_XREF=UI-R-CA0-awz-d-05-0-UI.s1 /CLONE=UI-R-CA0-awz-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.51379.1 /TIER=ConsEnd /STK=0 /UG=Rn.51379 /UG_TITLE=ESTs, Moderately similar to T48684 hypothetical protein DKFZp761N1814.1 (H.sapiens) BE108011 similar to EHM2 RGD1562988 500464 NM_001127565 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0019898 // extrinsic to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 1385605_at BF401793 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401793 /DB_XREF=gi:11389768 /DB_XREF=UI-R-CA0-bgo-g-05-0-UI.s1 /CLONE=UI-R-CA0-bgo-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.51488.1 /TIER=ConsEnd /STK=0 /UG=Rn.51488 /UG_TITLE=ESTs, Weakly similar to T13739 hypothetical protein EG:22E5.11 - fruit fly (D.melanogaster) BF401793 G protein-coupled receptor 84 Gpr84 688730 NM_001109509 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 1385606_at BF559626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559626 /DB_XREF=gi:11669356 /DB_XREF=UI-R-C0-gs-a-07-0-UI.r1 /CLONE=UI-R-C0-gs-a-07-0-UI /FEA=EST /CNT=2 /TID=Rn.52311.2 /TIER=ConsEnd /STK=0 /UG=Rn.52311 /UG_TITLE=ESTs BF559626 brain protein 16 Brp16 315094 NM_001007707 0005488 // binding // inferred from electronic annotation 1385607_at BF402418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402418 /DB_XREF=gi:11390393 /DB_XREF=UI-R-CA0-bhp-a-05-0-UI.s1 /CLONE=UI-R-CA0-bhp-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.60041.1 /TIER=ConsEnd /STK=0 /UG=Rn.60041 /UG_TITLE=ESTs, Highly similar to GBG5_HUMAN GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)G(S)G(O) GAMMA-5 SUBUNIT (R.norvegicus) BF402418 1385608_at BF404154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404154 /DB_XREF=gi:11392129 /DB_XREF=UI-R-CA1-biw-n-16-0-UI.s1 /CLONE=UI-R-CA1-biw-n-16-0-UI /FEA=EST /CNT=2 /TID=Rn.60444.1 /TIER=ConsEnd /STK=0 /UG=Rn.60444 /UG_TITLE=ESTs BF404154 1385609_at BF405879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405879 /DB_XREF=gi:11393854 /DB_XREF=UI-R-CA1-bii-b-02-0-UI.s1 /CLONE=UI-R-CA1-bii-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.60855.1 /TIER=ConsEnd /STK=0 /UG=Rn.60855 /UG_TITLE=ESTs, Moderately similar to UPK2 MOUSE UROPLAKIN II PRECURSOR (M.musculus) BF405879 uroplakin 2 Upk2 689093 NM_001109523 0016044 // cellular membrane organization // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded 0016324 // apical plasma membrane // not recorded /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation 1385610_at BF412640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412640 /DB_XREF=gi:11400629 /DB_XREF=UI-R-BT1-bnq-c-05-0-UI.s1 /CLONE=UI-R-BT1-bnq-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.62119.1 /TIER=ConsEnd /STK=0 /UG=Rn.62119 /UG_TITLE=ESTs, Moderately similar to SPS2 MOUSE SELENIDE,WATER DIKINASE 2 (M.musculus) BF412640 selenophosphate synthetase 1 Sephs1 291314 NM_001104630 0003824 // catalytic activity // inferred from electronic annotation /// 0004756 // selenide, water dikinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1385612_at AI717180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717180 /DB_XREF=gi:5034436 /DB_XREF=UI-R-Y0-acm-a-11-0-UI.s1 /CLONE=UI-R-Y0-acm-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.38483.1 /TIER=ConsEnd /STK=0 /UG=Rn.38483 /UG_TITLE=ESTs AI717180 1385613_at AI112079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112079 /DB_XREF=gi:3512028 /DB_XREF=UI-R-Y0-mh-h-06-0-UI.s1 /CLONE=UI-R-Y0-mh-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.20394.1 /TIER=ConsEnd /STK=0 /UG=Rn.20394 /UG_TITLE=ESTs AI112079 1385614_at BM388138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388138 /DB_XREF=gi:18188191 /DB_XREF=UI-R-DM1-cjz-p-09-0-UI.s1 /CLONE=UI-R-DM1-cjz-p-09-0-UI /FEA=EST /CNT=2 /TID=Rn.81341.1 /TIER=ConsEnd /STK=0 /UG=Rn.81341 /UG_TITLE=ESTs BM388138 melanophilin Mlph 316620 NM_001012135 0006605 // protein targeting // inferred from electronic annotation /// 0006605 // protein targeting // not recorded /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0030318 // melanocyte differentiation // inferred from electronic annotation /// 0030318 // melanocyte differentiation // not recorded /// 0032400 // melanosome localization // inferred from electronic annotation /// 0032400 // melanosome localization // not recorded /// 0043473 // pigmentation // inferred from electronic annotation /// 0043473 // pigmentation // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0042470 // melanosome // inferred from electronic annotation /// 0042470 // melanosome // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017022 // myosin binding // not recorded /// 0017022 // myosin binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // not recorded /// 0031489 // myosin V binding // inferred from electronic annotation /// 0031489 // myosin V binding // not recorded /// 0051010 // microtubule plus-end binding // inferred from electronic annotation /// 0051010 // microtubule plus-end binding // not recorded 1385615_at BF550268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550268 /DB_XREF=gi:11659956 /DB_XREF=UI-R-A1-ec-e-11-0-UI.r1 /CLONE=UI-R-A1-ec-e-11-0-UI /FEA=EST /CNT=1 /TID=Rn.32667.2 /TIER=ConsEnd /STK=0 /UG=Rn.32667 /UG_TITLE=ESTs, Highly similar to Y126_HUMAN HYPOTHETICAL PROTEIN KIAA0126 (H.sapiens) BF550268 ubiquitination factor E4A (UFD2 homolog, yeast) Ube4a 315608 NM_207610 0000209 // protein polyubiquitination // inferred from electronic annotation /// 0000209 // protein polyubiquitination // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0034450 // ubiquitin-ubiquitin ligase activity // inferred from electronic annotation /// 0034450 // ubiquitin-ubiquitin ligase activity // not recorded 1385616_a_at AI137136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137136 /DB_XREF=gi:3637913 /DB_XREF=UI-R-C2p-oe-g-04-0-UI.s1 /CLONE=UI-R-C2p-oe-g-04-0-UI /FEA=EST /CNT=1 /TID=Rn.7418.3 /TIER=ConsEnd /STK=0 /UG=Rn.7418 /UG_TITLE=ESTs, Highly similar to T08661 anti-silencing protein ASF1 homolog DKFZp547E2110.1 (H.sapiens) AI137136 ASF1 anti-silencing function 1 homolog A (S. cerevisiae) Asf1a 294408 NM_001106389 0006281 // DNA repair // not recorded /// 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006334 // nucleosome assembly // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016585 // chromatin remodeling complex // not recorded 0042393 // histone binding // not recorded 1385617_at BE096654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096654 /DB_XREF=gi:8487544 /DB_XREF=UI-R-BU0-api-c-08-0-UI.s1 /CLONE=UI-R-BU0-api-c-08-0-UI /FEA=EST /CNT=1 /TID=Rn.49453.1 /TIER=ConsEnd /STK=0 /UG=Rn.49453 /UG_TITLE=EST BE096654 1385618_at AA858570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858570 /DB_XREF=gi:4229902 /DB_XREF=UI-R-E0-bq-f-02-0-UI.s1 /CLONE=UI-R-E0-bq-f-02-0-UI /FEA=EST /CNT=1 /TID=Rn.754.1 /TIER=ConsEnd /STK=0 /UG=Rn.754 /UG_TITLE=EST AA858570 1385619_at BF562797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562797 /DB_XREF=gi:11672527 /DB_XREF=UI-R-BJ0p-aim-h-08-0-UI.r1 /CLONE=UI-R-BJ0p-aim-h-08-0-UI /FEA=EST /CNT=1 /TID=Rn.12560.2 /TIER=ConsEnd /STK=0 /UG=Rn.12560 /UG_TITLE=ESTs, Weakly similar to EG5_HUMAN KINESIN-RELATED MOTOR PROTEIN EG5 (H.sapiens) BF562797 kinesin family member 11 Kif11 171304 NM_001169112 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007051 // spindle organization // inferred from electronic annotation /// 0007051 // spindle organization // not recorded /// 0007100 // mitotic centrosome separation // inferred from electronic annotation /// 0007100 // mitotic centrosome separation // not recorded 0000922 // spindle pole // inferred from electronic annotation /// 0000922 // spindle pole // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded /// 0016585 // chromatin remodeling complex // inferred from electronic annotation /// 0016585 // chromatin remodeling complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1385620_at BF525282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF525282 /DB_XREF=gi:11633249 /DB_XREF=UI-R-G0-uo-e-12-0-UI.r1 /CLONE=UI-R-G0-uo-e-12-0-UI /FEA=EST /CNT=1 /TID=Rn.37906.1 /TIER=ConsEnd /STK=0 /UG=Rn.37906 /UG_TITLE=ESTs, Highly similar to H105 MOUSE HEAT-SHOCK PROTEIN 105 KDA (M.musculus) BF525282 heat shock 105kDa/110kDa protein 1 Hsph1 288444 NM_001011901 0006950 // response to stress // inferred from electronic annotation /// 0051085 // chaperone mediated protein folding requiring cofactor // inferred from electronic annotation /// 0051085 // chaperone mediated protein folding requiring cofactor // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1385621_at BF567091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567091 /DB_XREF=gi:11676779 /DB_XREF=UI-R-BJ0p-agg-c-02-0-UI.r1 /CLONE=UI-R-BJ0p-agg-c-02-0-UI /FEA=EST /CNT=1 /TID=Rn.45268.1 /TIER=ConsEnd /STK=0 /UG=Rn.45268 /UG_TITLE=ESTs BF567091 family with sequence similarity 48, member A Fam48a 361946 NM_001014170 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007369 // gastrulation // inferred from electronic annotation 0005515 // protein binding // not recorded 1385622_at BE119164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119164 /DB_XREF=gi:8511269 /DB_XREF=UI-R-CA0-azz-c-04-0-UI.s1 /CLONE=UI-R-CA0-azz-c-04-0-UI /FEA=EST /CNT=1 /TID=Rn.53159.1 /TIER=ConsEnd /STK=0 /UG=Rn.53159 /UG_TITLE=EST BE119164 1385623_at BF566948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF566948 /DB_XREF=gi:11676678 /DB_XREF=UI-R-BJ0p-afx-a-07-0-UI.r1 /CLONE=UI-R-BJ0p-afx-a-07-0-UI /FEA=EST /CNT=1 /TID=Rn.45038.3 /TIER=ConsEnd /STK=0 /UG=Rn.45038 /UG_TITLE=ESTs, Weakly similar to TUB RAT TUBBY PROTEIN HOMOLOG (R.norvegicus) BF566948 tubby-like protein 2 Tulp2 361576 NM_001012168 1385624_at BF566725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF566725 /DB_XREF=gi:11676455 /DB_XREF=UI-R-BJ0p-aff-a-06-0-UI.r1 /CLONE=UI-R-BJ0p-aff-a-06-0-UI /FEA=EST /CNT=1 /TID=Rn.54198.2 /TIER=ConsEnd /STK=0 /UG=Rn.54198 /UG_TITLE=ESTs BF566725 suppressor of Ty 3 homolog (S. cerevisiae) Supt3h 685697 XM_001064890 /// XM_002727168 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation 1385625_at BF551426 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551426 /DB_XREF=gi:11661156 /DB_XREF=UI-R-C1-ju-g-07-0-UI.r1 /CLONE=UI-R-C1-ju-g-07-0-UI /FEA=EST /CNT=1 /TID=Rn.16151.2 /TIER=ConsEnd /STK=0 /UG=Rn.16151 /UG_TITLE=ESTs, Weakly similar to FBL3_RAT EGF-CONTAINING FIBULIN-LIKE EXTRACELLULAR MATRIX PROTEIN 1 PRECURSOR (FIBULIN-3) (FIBL-3) (T16 PROTEIN) (R.norvegicus) BF551426 EGF-containing fibulin-like extracellular matrix protein 2 /// EGF-containing fibulin-like extracellular matrix protein 2-like Efemp2 /// LOC100365465 100365465 /// 293677 NM_001005907 /// XM_002725772 0007596 // blood coagulation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1385626_at BG669823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669823 /DB_XREF=gi:13891745 /DB_XREF=DRNAAKF11 /CLONE=DRNAAKF11 /FEA=EST /CNT=1 /TID=Rn.72500.2 /TIER=ConsEnd /STK=0 /UG=Rn.72500 /UG_TITLE=ESTs BG669823 similar to B230212L03Rik protein MGC95152 297109 NM_001007645 1385627_at BF407019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407019 /DB_XREF=gi:11394994 /DB_XREF=UI-R-BJ2-bpq-g-02-0-UI.s1 /CLONE=UI-R-BJ2-bpq-g-02-0-UI /FEA=EST /CNT=1 /TID=Rn.56132.3 /TIER=ConsEnd /STK=0 /UG=Rn.56132 /UG_TITLE=ESTs, Weakly similar to S68418 protein phosphatase 1M chain M110 isoform - rat (R.norvegicus) BF407019 B-cell CLL/lymphoma 3 Bcl3 680611 NM_001109422 0000060 // protein import into nucleus, translocation // not recorded /// 0002268 // follicular dendritic cell differentiation // not recorded /// 0002315 // marginal zone B cell differentiation // not recorded /// 0002455 // humoral immune response mediated by circulating immunoglobulin // not recorded /// 0002467 // germinal center formation // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded /// 0009615 // response to virus // not recorded /// 0010225 // response to UV-C // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0019730 // antimicrobial humoral response // not recorded /// 0030198 // extracellular matrix organization // not recorded /// 0030330 // DNA damage response, signal transduction by p53 class mediator // not recorded /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0042088 // T-helper 1 type immune response // not recorded /// 0042345 // regulation of NF-kappaB import into nucleus // not recorded /// 0042536 // negative regulation of tumor necrosis factor biosynthetic process // not recorded /// 0042742 // defense response to bacterium // not recorded /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded /// 0042832 // defense response to protozoan // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0045064 // T-helper 2 cell differentiation // not recorded /// 0045082 // positive regulation of interleukin-10 biosynthetic process // not recorded /// 0045415 // negative regulation of interleukin-8 biosynthetic process // not recorded /// 0045727 // positive regulation of translation // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048536 // spleen development // not recorded /// 0051101 // regulation of DNA binding // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0032996 // Bcl3-Bcl10 complex // not recorded /// 0033257 // Bcl3/NF-kappaB2 complex // not recorded /// 0043234 // protein complex // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0030528 // transcription regulator activity // not recorded 1385628_at BG057544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG057544 /DB_XREF=gi:12523140 /DB_XREF=nag14c06.x1 /CLONE=IMAGE:4176011 /FEA=EST /CNT=1 /TID=Rn.65590.1 /TIER=ConsEnd /STK=0 /UG=Rn.65590 /UG_TITLE=EST BG057544 1385629_at AA998089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998089 /DB_XREF=gi:4287438 /DB_XREF=UI-R-C0-id-h-06-0-UI.s1 /CLONE=UI-R-C0-id-h-06-0-UI /FEA=EST /CNT=1 /TID=Rn.12872.2 /TIER=ConsEnd /STK=0 /UG=Rn.12872 /UG_TITLE=ESTs AA998089 similar to hypothetical protein MGC29761 RGD1306233 296608 NM_001106564 1385630_at AA925114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925114 /DB_XREF=gi:4236305 /DB_XREF=UI-R-A1-ei-c-09-0-UI.s1 /CLONE=UI-R-A1-ei-c-09-0-UI /FEA=EST /CNT=1 /TID=Rn.15457.1 /TIER=ConsEnd /STK=0 /UG=Rn.15457 /UG_TITLE=ESTs AA925114 1385631_at AA925529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925529 /DB_XREF=gi:4236720 /DB_XREF=UI-R-A1-em-f-05-0-UI.s1 /CLONE=UI-R-A1-em-f-05-0-UI /FEA=EST /CNT=1 /TID=Rn.15545.1 /TIER=ConsEnd /STK=0 /UG=Rn.15545 /UG_TITLE=EST AA925529 1385632_at AA925938 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925938 /DB_XREF=gi:4237129 /DB_XREF=UI-R-A1-eo-a-04-0-UI.s1 /CLONE=UI-R-A1-eo-a-04-0-UI /FEA=EST /CNT=1 /TID=Rn.15622.2 /TIER=ConsEnd /STK=0 /UG=Rn.15622 /UG_TITLE=ESTs AA925938 leucine rich repeat containing 1 Lrrc1 367113 NM_001014268 0005515 // protein binding // inferred from electronic annotation 1385633_at AA817878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817878 /DB_XREF=gi:4198402 /DB_XREF=UI-R-A0-af-b-04-0-UI.s2 /CLONE=UI-R-A0-af-b-04-0-UI /FEA=EST /CNT=1 /TID=Rn.16405.1 /TIER=ConsEnd /STK=0 /UG=Rn.16405 /UG_TITLE=EST AA817878 1385634_at AA817959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817959 /DB_XREF=gi:4198482 /DB_XREF=UI-R-A0-ag-f-10-0-UI.s1 /CLONE=UI-R-A0-ag-f-10-0-UI /FEA=EST /CNT=1 /TID=Rn.16817.1 /TIER=ConsEnd /STK=0 /UG=Rn.16817 /UG_TITLE=EST AA817959 0007010 // cytoskeleton organization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation 1385635_at AI029143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029143 /DB_XREF=gi:4296519 /DB_XREF=UI-R-C0-ip-g-08-0-UI.s1 /CLONE=UI-R-C0-ip-g-08-0-UI /FEA=EST /CNT=1 /TID=Rn.18156.1 /TIER=ConsEnd /STK=0 /UG=Rn.18156 /UG_TITLE=ESTs AI029143 Cd5 molecule-like Cd5l 310693 NM_001025685 0016020 // membrane // inferred from electronic annotation 0005044 // scavenger receptor activity // inferred from electronic annotation 1385636_at AI029226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029226 /DB_XREF=gi:4297097 /DB_XREF=UI-R-C0-ip-h-02-0-UI.s1 /CLONE=UI-R-C0-ip-h-02-0-UI /FEA=EST /CNT=1 /TID=Rn.18182.1 /TIER=ConsEnd /STK=0 /UG=Rn.18182 /UG_TITLE=EST AI029226 frizzled homolog 3 (Drosophila) Fzd3 266715 NM_153474 0001736 // establishment of planar polarity // not recorded /// 0001843 // neural tube closure // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0021769 // orbitofrontal cortex development // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0071679 // commissural neuron axon guidance // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0030425 // dendrite // not recorded /// 0043025 // neuronal cell body // not recorded /// 0045177 // apical part of cell // not recorded /// 0048786 // presynaptic active zone // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017147 // Wnt-protein binding // not recorded 1385637_at AI029494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029494 /DB_XREF=gi:4298948 /DB_XREF=UI-R-C0-iw-f-03-0-UI.s1 /CLONE=UI-R-C0-iw-f-03-0-UI /FEA=EST /CNT=1 /TID=Rn.18239.1 /TIER=ConsEnd /STK=0 /UG=Rn.18239 /UG_TITLE=EST AI029494 Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 Svep1 685899 XM_001065678 /// XM_002726537 0007155 // cell adhesion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation 1385638_at AI029927 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029927 /DB_XREF=gi:3247753 /DB_XREF=UI-R-C0-ja-b-11-0-UI.s1 /CLONE=UI-R-C0-ja-b-11-0-UI /FEA=EST /CNT=1 /TID=Rn.18362.1 /TIER=ConsEnd /STK=0 /UG=Rn.18362 /UG_TITLE=ESTs AI029927 1385639_at AI058950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058950 /DB_XREF=gi:3332727 /DB_XREF=UI-R-C1-lr-d-08-0-UI.s1 /CLONE=UI-R-C1-lr-d-08-0-UI /FEA=EST /CNT=1 /TID=Rn.19029.2 /TIER=ConsEnd /STK=0 /UG=Rn.19029 /UG_TITLE=ESTs AI058950 caspase 8 associated protein 2 Casp8ap2 313128 NM_001107921 0006919 // activation of caspase activity // not recorded /// 0008625 // induction of apoptosis via death domain receptors // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008656 // caspase activator activity // not recorded /// 0016505 // apoptotic protease activator activity // not recorded /// 0042802 // identical protein binding // not recorded 1385640_at AI059511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059511 /DB_XREF=gi:3333288 /DB_XREF=UI-R-C1-kw-b-03-0-UI.s1 /CLONE=UI-R-C1-kw-b-03-0-UI /FEA=EST /CNT=1 /TID=Rn.19195.1 /TIER=ConsEnd /STK=0 /UG=Rn.19195 /UG_TITLE=EST AI059511 proprotein convertase subtilisin/kexin type 9 Pcsk9 298296 NM_199253 0001822 // kidney development // inferred from expression pattern /// 0001822 // kidney development // not recorded /// 0001822 // kidney development // inferred from electronic annotation /// 0001889 // liver development // inferred from expression pattern /// 0001889 // liver development // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001920 // negative regulation of receptor recycling // inferred from electronic annotation /// 0001920 // negative regulation of receptor recycling // not recorded /// 0002092 // positive regulation of receptor internalization // inferred from electronic annotation /// 0002092 // positive regulation of receptor internalization // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // not recorded /// 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0006644 // phospholipid metabolic process // not recorded /// 0006917 // induction of apoptosis // inferred from mutant phenotype /// 0007041 // lysosomal transport // inferred from electronic annotation /// 0007041 // lysosomal transport // not recorded /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0009267 // cellular response to starvation // inferred from direct assay /// 0009267 // cellular response to starvation // not recorded /// 0009267 // cellular response to starvation // inferred from electronic annotation /// 0010469 // regulation of receptor activity // inferred from electronic annotation /// 0010469 // regulation of receptor activity // not recorded /// 0010989 // negative regulation of low-density lipoprotein particle clearance // inferred from electronic annotation /// 0010989 // negative regulation of low-density lipoprotein particle clearance // not recorded /// 0016540 // protein autoprocessing // inferred from direct assay /// 0016540 // protein autoprocessing // not recorded /// 0016540 // protein autoprocessing // inferred from electronic annotation /// 0022008 // neurogenesis // inferred from expression pattern /// 0022008 // neurogenesis // not recorded /// 0022008 // neurogenesis // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from sequence or structural similarity /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0032799 // low-density lipoprotein receptor metabolic process // not recorded /// 0032799 // low-density lipoprotein receptor metabolic process // inferred from electronic annotation /// 0032802 // low-density lipoprotein receptor catabolic process // not recorded /// 0032802 // low-density lipoprotein receptor catabolic process // inferred from sequence or structural similarity /// 0032802 // low-density lipoprotein receptor catabolic process // inferred from electronic annotation /// 0032803 // regulation of low-density lipoprotein receptor catabolic process // inferred from electronic annotation /// 0032803 // regulation of low-density lipoprotein receptor catabolic process // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from direct assay /// 0032869 // cellular response to insulin stimulus // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0042157 // lipoprotein metabolic process // inferred from electronic annotation /// 0042157 // lipoprotein metabolic process // not recorded /// 0042632 // cholesterol homeostasis // inferred from expression pattern /// 0042632 // cholesterol homeostasis // not recorded /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptosis // inferred from direct assay /// 0043525 // positive regulation of neuron apoptosis // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from electronic annotation /// 0051605 // protein maturation by peptide bond cleavage // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005770 // late endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0004252 // serine-type endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from sequence or structural similarity /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0034190 // apolipoprotein receptor binding // inferred from electronic annotation /// 0034190 // apolipoprotein receptor binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0050750 // low-density lipoprotein receptor binding // not recorded /// 0050750 // low-density lipoprotein receptor binding // inferred from sequence or structural similarity /// 0050750 // low-density lipoprotein receptor binding // inferred from electronic annotation /// 0070326 // very-low-density lipoprotein receptor binding // inferred from electronic annotation /// 0070326 // very-low-density lipoprotein receptor binding // not recorded 1385641_at AI070558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070558 /DB_XREF=gi:3396809 /DB_XREF=UI-R-C1-kx-g-01-0-UI.s2 /CLONE=UI-R-C1-kx-g-01-0-UI /FEA=EST /CNT=1 /TID=Rn.19786.1 /TIER=ConsEnd /STK=0 /UG=Rn.19786 /UG_TITLE=ESTs AI070558 1385642_at AI071886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071886 /DB_XREF=gi:3398101 /DB_XREF=UI-R-C2-mz-b-02-0-UI.s1 /CLONE=UI-R-C2-mz-b-02-0-UI /FEA=EST /CNT=1 /TID=Rn.20665.1 /TIER=ConsEnd /STK=0 /UG=Rn.20665 /UG_TITLE=EST AI071886 1385643_at AI045069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045069 /DB_XREF=gi:3291888 /DB_XREF=UI-R-C1-kf-c-07-0-UI.s1 /CLONE=UI-R-C1-kf-c-07-0-UI /FEA=EST /CNT=1 /TID=Rn.20836.1 /TIER=ConsEnd /STK=0 /UG=Rn.20836 /UG_TITLE=EST AI045069 1385644_at AI058291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058291 /DB_XREF=gi:3332068 /DB_XREF=UI-R-C1-kl-c-07-0-UI.s1 /CLONE=UI-R-C1-kl-c-07-0-UI /FEA=EST /CNT=1 /TID=Rn.20943.1 /TIER=ConsEnd /STK=0 /UG=Rn.20943 /UG_TITLE=EST, Weakly similar to Glutaredoxin, Zinc finger, C3HC4 type (RING finger) (Caenorhabditis elegans) (C.elegans) AI058291 ring finger protein 121 Rnf121 308871 NM_001107540 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385645_at AA875088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875088 /DB_XREF=gi:4230969 /DB_XREF=UI-R-E0-cf-f-11-0-UI.s1 /CLONE=UI-R-E0-cf-f-11-0-UI /FEA=EST /CNT=1 /TID=Rn.21412.1 /TIER=ConsEnd /STK=0 /UG=Rn.21412 /UG_TITLE=EST AA875088 1385647_at AA875123 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875123 /DB_XREF=gi:4231004 /DB_XREF=UI-R-E0-bu-c-03-0-UI.s2 /CLONE=UI-R-E0-bu-c-03-0-UI /FEA=EST /CNT=1 /TID=Rn.2797.1 /TIER=ConsEnd /STK=0 /UG=Rn.2797 /UG_TITLE=EST AA875123 1385648_at AA956840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956840 /DB_XREF=gi:4239314 /DB_XREF=UI-R-E1-fo-a-01-0-UI.s1 /CLONE=UI-R-E1-fo-a-01-0-UI /FEA=EST /CNT=1 /TID=Rn.32881.2 /TIER=ConsEnd /STK=0 /UG=Rn.32881 /UG_TITLE=ESTs AA956840 1385649_at AI385193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385193 /DB_XREF=gi:4197975 /DB_XREF=UI-R-E0-cq-d-06-0-UI.s1 /CLONE=UI-R-E0-cq-d-06-0-UI /FEA=EST /CNT=1 /TID=Rn.34297.1 /TIER=ConsEnd /STK=0 /UG=Rn.34297 /UG_TITLE=EST AI385193 integrin, alpha 5 (fibronectin receptor, alpha polypeptide) Itga5 315346 NM_001108118 0007044 // cell-substrate junction assembly // not recorded /// 0007155 // cell adhesion // inferred from direct assay /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007157 // heterophilic cell-cell adhesion // not recorded /// 0007159 // leukocyte cell-cell adhesion // not recorded /// 0007229 // integrin-mediated signaling pathway // inferred from direct assay /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007613 // memory // not recorded /// 0010811 // positive regulation of cell-substrate adhesion // inferred from mutant phenotype /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0033631 // cell-cell adhesion mediated by integrin // not recorded /// 0035313 // wound healing, spreading of epidermal cells // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded 0005615 // extracellular space // traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // not recorded /// 0005925 // focal adhesion // not recorded /// 0008305 // integrin complex // inferred from direct assay /// 0008305 // integrin complex // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0032587 // ruffle membrane // not recorded 0004872 // receptor activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from physical interaction /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // not recorded /// 0050839 // cell adhesion molecule binding // inferred from direct assay 1385650_at AI576299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576299 /DB_XREF=gi:4560675 /DB_XREF=UI-R-Y0-vb-e-11-0-UI.s1 /CLONE=UI-R-Y0-vb-e-11-0-UI /FEA=EST /CNT=1 /TID=Rn.38258.1 /TIER=ConsEnd /STK=0 /UG=Rn.38258 /UG_TITLE=EST AI576299 radial spokehead-like 2 Rshl2 361476 NM_001108463 1385651_at AI575761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575761 /DB_XREF=gi:4560137 /DB_XREF=UI-R-G0-ue-d-07-0-UI.s1 /CLONE=UI-R-G0-ue-d-07-0-UI /FEA=EST /CNT=1 /TID=Rn.38883.1 /TIER=ConsEnd /STK=0 /UG=Rn.38883 /UG_TITLE=EST AI575761 1385652_at AI549246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549246 /DB_XREF=gi:4466734 /DB_XREF=UI-R-C3-tx-d-03-0-UI.s1 /CLONE=UI-R-C3-tx-d-03-0-UI /FEA=EST /CNT=1 /TID=Rn.42013.1 /TIER=ConsEnd /STK=0 /UG=Rn.42013 /UG_TITLE=EST AI549246 1385653_at AA817920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817920 /DB_XREF=gi:4198443 /DB_XREF=UI-R-A0-af-f-09-0-UI.s1 /CLONE=UI-R-A0-af-f-09-0-UI /FEA=EST /CNT=1 /TID=Rn.42321.1 /TIER=ConsEnd /STK=0 /UG=Rn.42321 /UG_TITLE=EST AA817920 RAB39, member RAS oncogene family Rab39 315668 NM_001108148 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1385654_at AI548388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548388 /DB_XREF=gi:4465876 /DB_XREF=UI-R-C3-te-c-04-0-UI.s1 /CLONE=UI-R-C3-te-c-04-0-UI /FEA=EST /CNT=1 /TID=Rn.43879.1 /TIER=ConsEnd /STK=0 /UG=Rn.43879 /UG_TITLE=ESTs AI548388 spermatogenesis and oogenesis specific basic helix-loop-helix 1 Sohlh1 362085 NM_001191852 /// XM_001078103 /// XM_342386 0001541 // ovarian follicle development // not recorded /// 0007283 // spermatogenesis // not recorded /// 0030154 // cell differentiation // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0048477 // oogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0016563 // transcription activator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1385655_at AA925880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925880 /DB_XREF=gi:4237071 /DB_XREF=UI-R-A1-eo-g-10-0-UI.s1 /CLONE=UI-R-A1-eo-g-10-0-UI /FEA=EST /CNT=1 /TID=Rn.48870.1 /TIER=ConsEnd /STK=0 /UG=Rn.48870 /UG_TITLE=EST AA925880 RIO kinase 1 (yeast) Riok1 291061 NM_001100511 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1385656_at AI043676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043676 /DB_XREF=gi:3290411 /DB_XREF=UI-R-C0-jl-b-06-0-UI.s1 /CLONE=UI-R-C0-jl-b-06-0-UI /FEA=EST /CNT=1 /TID=Rn.54081.1 /TIER=ConsEnd /STK=0 /UG=Rn.54081 /UG_TITLE=EST AI043676 transmembrane protein 174 Tmem174 499516 NM_001024298 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1385657_at BF549861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549861 /DB_XREF=gi:11659591 /DB_XREF=UI-R-A0-aw-f-11-0-UI.r1 /CLONE=UI-R-A0-aw-f-11-0-UI /FEA=EST /CNT=1 /TID=Rn.63940.2 /TIER=ConsEnd /STK=0 /UG=Rn.63940 /UG_TITLE=ESTs, Moderately similar to JE0271 beta spectrin, beta SpIII sigma1 - rat (R.norvegicus) BF549861 spectrin, beta, erythrocytic Sptb 314251 NM_212522 0006779 // porphyrin biosynthetic process // inferred from electronic annotation /// 0006779 // porphyrin biosynthetic process // not recorded 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0008091 // spectrin // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0014731 // spectrin-associated cytoskeleton // not recorded /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // not recorded /// 0043234 // protein complex // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051015 // actin filament binding // not recorded 1385658_at AI059254 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059254 /DB_XREF=gi:3333031 /DB_XREF=UI-R-C1-ld-f-06-0-UI.s1 /CLONE=UI-R-C1-ld-f-06-0-UI /FEA=EST /CNT=1 /TID=Rn.67046.1 /TIER=ConsEnd /STK=0 /UG=Rn.67046 /UG_TITLE=EST, Weakly similar to T43439 hypothetical protein DKFZp434I1714.1 (H.sapiens) AI059254 ring finger protein 114 Rnf114 362277 NM_001001517 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385659_at AA956596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956596 /DB_XREF=gi:4239070 /DB_XREF=UI-R-E1-fk-d-09-0-UI.s1 /CLONE=UI-R-E1-fk-d-09-0-UI /FEA=EST /CNT=1 /TID=Rn.9032.2 /TIER=ConsEnd /STK=0 /UG=Rn.9032 /UG_TITLE=ESTs AA956596 similar to adenomatosis polyposis coli down-regulated 1 LOC682861 682861 XM_001063452 1385660_at AA924079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924079 /DB_XREF=gi:4234171 /DB_XREF=UI-R-A1-du-f-12-0-UI.s1 /CLONE=UI-R-A1-du-f-12-0-UI /FEA=EST /CNT=1 /TID=Rn.21464.1 /TIER=ConsEnd /STK=0 /UG=Rn.21464 /UG_TITLE=EST AA924079 1385661_at BG057536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG057536 /DB_XREF=gi:12523124 /DB_XREF=nag14b05.x1 /CLONE=IMAGE:4175961 /FEA=EST /CNT=1 /TID=Rn.65588.1 /TIER=ConsEnd /STK=0 /UG=Rn.65588 /UG_TITLE=EST, Highly similar to SYV2_MOUSE VALYL-TRNA SYNTHETASE 2 (VALINE--TRNA LIGASE 2) (VALRS 2) (M.musculus) BG057536 valyl-tRNA synthetase Vars 25009 NM_053292 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006438 // valyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004832 // valine-tRNA ligase activity // inferred from direct assay /// 0004832 // valine-tRNA ligase activity // not recorded /// 0004832 // valine-tRNA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1385662_at BF562135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562135 /DB_XREF=gi:11671865 /DB_XREF=UI-R-E1-fs-g-10-0-UI.r1 /CLONE=UI-R-E1-fs-g-10-0-UI /FEA=EST /CNT=1 /TID=Rn.27504.2 /TIER=ConsEnd /STK=0 /UG=Rn.27504 /UG_TITLE=ESTs BF562135 DNA (cytosine-5-)-methyltransferase 3 beta Dnmt3b 444985 NM_001003959 0006306 // DNA methylation // inferred from electronic annotation /// 0006306 // DNA methylation // not recorded /// 0006346 // methylation-dependent chromatin silencing // inferred from electronic annotation /// 0006346 // methylation-dependent chromatin silencing // not recorded /// 0006349 // regulation of gene expression by genetic imprinting // inferred from electronic annotation /// 0006349 // regulation of gene expression by genetic imprinting // not recorded /// 0010212 // response to ionizing radiation // inferred from expression pattern /// 0010424 // DNA methylation on cytosine within a CG sequence // inferred from direct assay /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0016481 // negative regulation of transcription // inferred from mutant phenotype /// 0031503 // protein complex localization // inferred from electronic annotation /// 0031503 // protein complex localization // not recorded /// 0032259 // methylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043045 // DNA methylation involved in embryo development // not recorded /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0045814 // negative regulation of gene expression, epigenetic // not recorded /// 0046498 // S-adenosylhomocysteine metabolic process // inferred from direct assay /// 0046499 // S-adenosylmethioninamine metabolic process // inferred from direct assay /// 0051571 // positive regulation of histone H3-K4 methylation // inferred from electronic annotation /// 0051571 // positive regulation of histone H3-K4 methylation // not recorded /// 0051573 // negative regulation of histone H3-K9 methylation // inferred from electronic annotation /// 0051573 // negative regulation of histone H3-K9 methylation // not recorded /// 0090116 // C-5 methylation of cytosine // not recorded 0000775 // chromosome, centromeric region // not recorded /// 0000792 // heterochromatin // not recorded /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005720 // nuclear heterochromatin // inferred from electronic annotation /// 0005720 // nuclear heterochromatin // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0003886 // DNA (cytosine-5-)-methyltransferase activity // not recorded /// 0003886 // DNA (cytosine-5-)-methyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008168 // methyltransferase activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0045322 // unmethylated CpG binding // inferred from direct assay /// 0051718 // DNA (cytosine-5-)-methyltransferase activity, acting on CpG substrates // inferred from direct assay 1385663_at BF567505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567505 /DB_XREF=gi:11677235 /DB_XREF=UI-R-BO0-ago-g-12-0-UI.r1 /CLONE=UI-R-BO0-ago-g-12-0-UI /FEA=EST /CNT=1 /TID=Rn.67622.2 /TIER=ConsEnd /STK=0 /UG=Rn.67622 /UG_TITLE=ESTs, Weakly similar to UBP5 MOUSE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5 (M.musculus) BF567505 ubiquitin specific protease 13 (isopeptidase T-3) Usp13 310306 NM_001107665 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385664_at AI535113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535113 /DB_XREF=gi:4449248 /DB_XREF=UI-R-C3-sx-g-08-0-UI.s1 /CLONE=UI-R-C3-sx-g-08-0-UI /FEA=EST /CNT=1 /TID=Rn.34745.1 /TIER=ConsEnd /STK=0 /UG=Rn.34745 /UG_TITLE=EST AI535113 1385665_at AI454778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454778 /DB_XREF=gi:4296105 /DB_XREF=UI-R-C2p-qm-b-11-0-UI.s1 /CLONE=UI-R-C2p-qm-b-11-0-UI /FEA=EST /CNT=1 /TID=Rn.35109.1 /TIER=ConsEnd /STK=0 /UG=Rn.35109 /LL=57031 /UG_GENE=Adam19 /UG_TITLE=a disintegrin and metalloproteinase domain 19 (meltrin beta) AI454778 a disintegrin and metallopeptidase domain 19 (meltrin beta) Adam19 303068 NM_001160228 0006508 // proteolysis // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0007507 // heart development // not recorded 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1385667_x_at AI029796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029796 /DB_XREF=gi:4301036 /DB_XREF=UI-R-C0-iz-h-02-0-UI.s1 /CLONE=UI-R-C0-iz-h-02-0-UI /FEA=EST /CNT=1 /TID=Rn.6374.2 /TIER=ConsEnd /STK=0 /UG=Rn.6374 /UG_TITLE=ESTs AI029796 1385668_at AI044864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044864 /DB_XREF=gi:3291683 /DB_XREF=UI-R-C1-kd-d-11-0-UI.s1 /CLONE=UI-R-C1-kd-d-11-0-UI /FEA=EST /CNT=1 /TID=Rn.16041.1 /TIER=ConsEnd /STK=0 /UG=Rn.16041 /UG_TITLE=ESTs AI044864 hypothetical protein LOC683460 LOC683460 683460 XM_001065403 1385669_at BF551518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551518 /DB_XREF=gi:11661248 /DB_XREF=UI-R-C1-kd-e-09-0-UI.r1 /CLONE=UI-R-C1-kd-e-09-0-UI /FEA=EST /CNT=1 /TID=Rn.16044.2 /TIER=ConsEnd /STK=0 /UG=Rn.16044 /UG_TITLE=ESTs BF551518 MAD1 mitotic arrest deficient-like 1 (yeast) Mad1l1 680006 NM_001109387 0000776 // kinetochore // not recorded /// 0005643 // nuclear pore // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded 1385670_at BF521655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF521655 /DB_XREF=gi:11629622 /DB_XREF=UI-R-A1-el-e-10-0-UI.r1 /CLONE=UI-R-A1-el-e-10-0-UI /FEA=EST /CNT=1 /TID=Rn.54338.2 /TIER=ConsEnd /STK=0 /UG=Rn.54338 /UG_TITLE=ESTs, Weakly similar to SDHL RAT L-SERINE DEHYDRATASEL-THREONINE DEAMINASE (R.norvegicus) BF521655 serine dehydratase-like Sdsl 360816 NM_001108336 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1385671_at AA956689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956689 /DB_XREF=gi:4239163 /DB_XREF=UI-R-E1-fm-f-01-0-UI.s1 /CLONE=UI-R-E1-fm-f-01-0-UI /FEA=EST /CNT=1 /TID=Rn.9060.1 /TIER=ConsEnd /STK=0 /UG=Rn.9060 /UG_TITLE=EST AA956689 1385672_at AI549133 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549133 /DB_XREF=gi:4466621 /DB_XREF=UI-R-C3-tq-h-11-0-UI.s1 /CLONE=UI-R-C3-tq-h-11-0-UI /FEA=EST /CNT=1 /TID=Rn.42102.1 /TIER=ConsEnd /STK=0 /UG=Rn.42102 /UG_TITLE=ESTs AI549133 1385673_at BG666060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666060 /DB_XREF=gi:13887982 /DB_XREF=DRACMG08 /CLONE=DRACMG08 /FEA=EST /CNT=1 /TID=Rn.43464.2 /TIER=ConsEnd /STK=0 /UG=Rn.43464 /UG_TITLE=ESTs BG666060 RPA interacting protein Rpain 287463 NM_001033060 0006261 // DNA-dependent DNA replication // not recorded /// 0006281 // DNA repair // not recorded /// 0006310 // DNA recombination // not recorded /// 0006606 // protein import into nucleus // not recorded /// 0009411 // response to UV // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016605 // PML body // not recorded 0032403 // protein complex binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1385674_at BG373871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373871 /DB_XREF=gi:13298343 /DB_XREF=UI-R-CV1-bsk-g-11-0-UI.s1 /CLONE=UI-R-CV1-bsk-g-11-0-UI /FEA=EST /CNT=1 /TID=Rn.66168.1 /TIER=ConsEnd /STK=0 /UG=Rn.66168 /UG_TITLE=EST BG373871 1385675_at BG376858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376858 /DB_XREF=gi:13301330 /DB_XREF=UI-R-CA1-bli-a-12-0-UI.s1 /CLONE=UI-R-CA1-bli-a-12-0-UI /FEA=EST /CNT=1 /TID=Rn.66437.1 /TIER=ConsEnd /STK=0 /UG=Rn.66437 /UG_TITLE=EST BG376858 similar to RIKEN cDNA 4921536K21 RGD1308775 305476 NM_001107233 1385676_at BG379822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379822 /DB_XREF=gi:13304294 /DB_XREF=UI-R-CS0-btn-f-03-0-UI.s1 /CLONE=UI-R-CS0-btn-f-03-0-UI /FEA=EST /CNT=1 /TID=Rn.66701.1 /TIER=ConsEnd /STK=0 /UG=Rn.66701 /UG_TITLE=EST BG379822 Cd2 (cytoplasmic tail) binding protein 2 Cd2bp2 293505 NM_001106297 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005682 // U5 snRNP // inferred from electronic annotation /// 0005682 // U5 snRNP // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded /// 0046540 // U4/U6 x U5 tri-snRNP complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043021 // ribonucleoprotein binding // inferred from electronic annotation /// 0043021 // ribonucleoprotein binding // not recorded 1385677_s_at BG372143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372143 /DB_XREF=gi:13268720 /DB_XREF=UI-R-CV0-brn-e-03-0-UI.s1 /CLONE=UI-R-CV0-brn-e-03-0-UI /FEA=EST /CNT=1 /TID=Rn.66895.1 /TIER=ConsEnd /STK=0 /UG=Rn.66895 /UG_TITLE=EST BG372143 1385678_at BG372536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372536 /DB_XREF=gi:13269073 /DB_XREF=UI-R-CV1-brv-c-11-0-UI.s1 /CLONE=UI-R-CV1-brv-c-11-0-UI /FEA=EST /CNT=1 /TID=Rn.66930.1 /TIER=ConsEnd /STK=0 /UG=Rn.66930 /UG_TITLE=EST BG372536 polymerase (DNA directed) kappa Polk 171525 NM_138516 0006261 // DNA-dependent DNA replication // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006281 // DNA repair // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation 1385679_at BG378431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378431 /DB_XREF=gi:13302868 /DB_XREF=UI-R-CU0-bvi-f-01-0-UI.s1 /CLONE=UI-R-CU0-bvi-f-01-0-UI /FEA=EST /CNT=1 /TID=Rn.73208.1 /TIER=ConsEnd /STK=0 /UG=Rn.73208 /UG_TITLE=EST BG378431 1385680_at BG667707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667707 /DB_XREF=gi:13889629 /DB_XREF=DRABJG01 /CLONE=DRABJG01 /FEA=EST /CNT=1 /TID=Rn.74092.1 /TIER=ConsEnd /STK=0 /UG=Rn.74092 /UG_TITLE=EST, Moderately similar to SR54 MOUSE SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN (M.musculus) BG667707 signal recognition particle 54a Srp54a 116650 NM_053871 0006614 // SRP-dependent cotranslational protein targeting to membrane // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0045047 // protein targeting to ER // not recorded /// 0045047 // protein targeting to ER // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005786 // signal recognition particle, endoplasmic reticulum targeting // inferred from electronic annotation /// 0005786 // signal recognition particle, endoplasmic reticulum targeting // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0048500 // signal recognition particle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0008144 // drug binding // inferred from electronic annotation /// 0008144 // drug binding // not recorded /// 0008312 // 7S RNA binding // inferred from electronic annotation /// 0008312 // 7S RNA binding // not recorded /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0019003 // GDP binding // inferred from electronic annotation /// 0019003 // GDP binding // not recorded /// 0030942 // endoplasmic reticulum signal peptide binding // inferred from electronic annotation /// 0030942 // endoplasmic reticulum signal peptide binding // not recorded /// 0043021 // ribonucleoprotein binding // inferred from electronic annotation /// 0043021 // ribonucleoprotein binding // not recorded 1385681_at BG668520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668520 /DB_XREF=gi:13890442 /DB_XREF=DRABKF10 /CLONE=DRABKF10 /FEA=EST /CNT=1 /TID=Rn.74107.1 /TIER=ConsEnd /STK=0 /UG=Rn.74107 /UG_TITLE=EST BG668520 similar to RIKEN cDNA 5430437P03 MGC94542 290631 NM_001006964 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // not recorded /// 0006302 // double-strand break repair // inferred from sequence or structural similarity /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010212 // response to ionizing radiation // not recorded /// 0010212 // response to ionizing radiation // inferred from sequence or structural similarity /// 0016568 // chromatin modification // inferred from electronic annotation /// 0031572 // G2/M transition DNA damage checkpoint // not recorded /// 0031572 // G2/M transition DNA damage checkpoint // inferred from sequence or structural similarity /// 0045739 // positive regulation of DNA repair // not recorded /// 0045739 // positive regulation of DNA repair // inferred from sequence or structural similarity /// 0070536 // protein K63-linked deubiquitination // not recorded /// 0070536 // protein K63-linked deubiquitination // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0070531 // BRCA1-A complex // not recorded /// 0070531 // BRCA1-A complex // inferred from sequence or structural similarity /// 0070552 // BRISC complex // not recorded /// 0070552 // BRISC complex // inferred from sequence or structural similarity 0005515 // protein binding // not recorded 1385682_at BI300559 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300559 /DB_XREF=gi:14976839 /DB_XREF=UI-R-CV2-cim-d-06-0-UI.s1 /CLONE=UI-R-CV2-cim-d-06-0-UI /FEA=EST /CNT=1 /TID=Rn.76796.1 /TIER=ConsEnd /STK=0 /UG=Rn.76796 /UG_TITLE=EST BI300559 vitrin Vit 313831 XM_001064219 /// XM_233802 0010811 // positive regulation of cell-substrate adhesion // not recorded /// 0030198 // extracellular matrix organization // not recorded 0005614 // interstitial matrix // not recorded /// 0031012 // extracellular matrix // not recorded 0005539 // glycosaminoglycan binding // not recorded 1385683_at BI278404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278404 /DB_XREF=gi:14925214 /DB_XREF=UI-R-CZ0-byg-b-07-0-UI.s1 /CLONE=UI-R-CZ0-byg-b-07-0-UI /FEA=EST /CNT=1 /TID=Rn.77785.1 /TIER=ConsEnd /STK=0 /UG=Rn.77785 /UG_TITLE=EST, Weakly similar to KRMS2 keratin, type II cytoskeletal - mouse (M.musculus) BI278404 similar to RIKEN cDNA 2300002M23 RGD1562885 502412 NM_001166267 1385684_x_at BI278661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278661 /DB_XREF=gi:14925730 /DB_XREF=UI-R-DB0-bza-d-02-0-UI.s1 /CLONE=UI-R-DB0-bza-d-02-0-UI /FEA=EST /CNT=1 /TID=Rn.77827.1 /TIER=ConsEnd /STK=0 /UG=Rn.77827 /UG_TITLE=EST BI278661 leucine rich repeat containing 37A /// proline rich protein 2-like 1 Lrrc37a /// Prp2l1 287750 /// 303556 XM_001081536 /// XM_001081550 /// XM_002727827 /// XM_220928 0005515 // protein binding // inferred from electronic annotation 1385685_at BI281097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281097 /DB_XREF=gi:14930496 /DB_XREF=UI-R-DD0-bzr-b-12-0-UI.s1 /CLONE=UI-R-DD0-bzr-b-12-0-UI /FEA=EST /CNT=1 /TID=Rn.78144.1 /TIER=ConsEnd /STK=0 /UG=Rn.78144 /UG_TITLE=EST, Moderately similar to CYTA RAT CYSTATIN ALPHA (R.norvegicus) BI281097 stefin A3 Stfa3 288075 NM_001105877 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004866 // endopeptidase inhibitor activity // inferred from electronic annotation /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1385686_at BI283251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283251 /DB_XREF=gi:14934812 /DB_XREF=UI-R-DD0-bzs-h-09-0-UI.s1 /CLONE=UI-R-DD0-bzs-h-09-0-UI /FEA=EST /CNT=1 /TID=Rn.78360.1 /TIER=ConsEnd /STK=0 /UG=Rn.78360 /UG_TITLE=EST BI283251 small proline-rich protein 1B (cornifin) Sprr1b 685912 XM_001065728 /// XM_002726009 0018149 // peptide cross-linking // not recorded /// 0030216 // keratinocyte differentiation // not recorded 0001533 // cornified envelope // not recorded 0005198 // structural molecule activity // not recorded /// 0030674 // protein binding, bridging // not recorded 1385687_at BI285092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285092 /DB_XREF=gi:14938392 /DB_XREF=UI-R-DB0-byw-b-01-0-UI.s1 /CLONE=UI-R-DB0-byw-b-01-0-UI /FEA=EST /CNT=1 /TID=Rn.78551.1 /TIER=ConsEnd /STK=0 /UG=Rn.78551 /UG_TITLE=EST BI285092 family with sequence similarity 25, member A Fam25a 684972 NM_001134849 1385688_at BI287225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287225 /DB_XREF=gi:14942635 /DB_XREF=UI-R-CW0s-ccl-d-07-0-UI.s1 /CLONE=UI-R-CW0s-ccl-d-07-0-UI /FEA=EST /CNT=1 /TID=Rn.78758.1 /TIER=ConsEnd /STK=0 /UG=Rn.78758 /UG_TITLE=EST BI287225 1385689_at BI290860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290860 /DB_XREF=gi:14949843 /DB_XREF=UI-R-DK0-cgi-d-03-0-UI.s1 /CLONE=UI-R-DK0-cgi-d-03-0-UI /FEA=EST /CNT=1 /TID=Rn.79196.1 /TIER=ConsEnd /STK=0 /UG=Rn.79196 /UG_TITLE=EST BI290860 1385690_at BI293631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293631 /DB_XREF=gi:14955310 /DB_XREF=UI-R-DK0-cds-h-05-0-UI.s1 /CLONE=UI-R-DK0-cds-h-05-0-UI /FEA=EST /CNT=1 /TID=Rn.79459.1 /TIER=ConsEnd /STK=0 /UG=Rn.79459 /UG_TITLE=EST, Highly similar to S13043 methylmalonyl-CoA mutase (M.musculus) BI293631 methylmalonyl-Coenzyme A mutase Mut 688517 XM_001067239 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004494 // methylmalonyl-CoA mutase activity // inferred from electronic annotation /// 0004494 // methylmalonyl-CoA mutase activity // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation /// 0016866 // intramolecular transferase activity // inferred from electronic annotation /// 0031419 // cobalamin binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385691_at BI293900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293900 /DB_XREF=gi:14955837 /DB_XREF=UI-R-DK0-cdw-d-01-0-UI.s1 /CLONE=UI-R-DK0-cdw-d-01-0-UI /FEA=EST /CNT=1 /TID=Rn.79494.1 /TIER=ConsEnd /STK=0 /UG=Rn.79494 /UG_TITLE=EST BI293900 1385692_at BI294864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294864 /DB_XREF=gi:14957734 /DB_XREF=UI-R-DK0-ced-a-07-0-UI.s1 /CLONE=UI-R-DK0-ced-a-07-0-UI /FEA=EST /CNT=1 /TID=Rn.79638.1 /TIER=ConsEnd /STK=0 /UG=Rn.79638 /UG_TITLE=EST BI294864 solute carrier family 10 (sodium/bile acid cotransporter family), member 4 Slc10a4 305309 NM_001008555 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008508 // bile acid:sodium symporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation 1385693_at BI295028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295028 /DB_XREF=gi:14958062 /DB_XREF=UI-R-DK0-cee-h-09-0-UI.s1 /CLONE=UI-R-DK0-cee-h-09-0-UI /FEA=EST /CNT=1 /TID=Rn.79651.1 /TIER=ConsEnd /STK=0 /UG=Rn.79651 /UG_TITLE=EST BI295028 1385694_at BI297119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297119 /DB_XREF=gi:14962211 /DB_XREF=UI-R-DK0-cdt-e-10-0-UI.s1 /CLONE=UI-R-DK0-cdt-e-10-0-UI /FEA=EST /CNT=1 /TID=Rn.79873.1 /TIER=ConsEnd /STK=0 /UG=Rn.79873 /UG_TITLE=EST, Weakly similar to S12207 hypothetical protein (M.musculus) BI297119 1385695_at BI274399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274399 /DB_XREF=gi:14885275 /DB_XREF=UI-R-CW0-bwi-e-02-0-UI.s1 /CLONE=UI-R-CW0-bwi-e-02-0-UI /FEA=EST /CNT=1 /TID=Rn.79972.1 /TIER=ConsEnd /STK=0 /UG=Rn.79972 /UG_TITLE=ESTs, Weakly similar to PROTEIN-LYSINE 6-OXIDASE PRECURSOR (R.norvegicus) BI274399 lysyl oxidase-like 3 Loxl3 312478 NM_001107866 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from electronic annotation /// 0016641 // oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor // inferred from electronic annotation 1385696_at BI274471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274471 /DB_XREF=gi:14885414 /DB_XREF=UI-R-CW0-bwj-c-05-0-UI.s1 /CLONE=UI-R-CW0-bwj-c-05-0-UI /FEA=EST /CNT=1 /TID=Rn.79975.1 /TIER=ConsEnd /STK=0 /UG=Rn.79975 /UG_TITLE=EST BI274471 1385697_at BI302799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302799 /DB_XREF=gi:14979079 /DB_XREF=UI-R-DO0-ciy-o-17-0-UI.s1 /CLONE=UI-R-DO0-ciy-o-17-0-UI /FEA=EST /CNT=1 /TID=Rn.21407.3 /TIER=ConsEnd /STK=0 /UG=Rn.21407 /UG_TITLE=ESTs BI302799 cyclin T2 Ccnt2 304758 NM_001107171 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded 1385698_at AI603068 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI603068 /DB_XREF=gi:4612229 /DB_XREF=UI-R-AG0-xc-d-08-0-UI.s1 /CLONE=UI-R-AG0-xc-d-08-0-UI /FEA=EST /CNT=1 /TID=Rn.43568.1 /TIER=ConsEnd /STK=0 /UG=Rn.43568 /UG_TITLE=EST AI603068 Cysteinyl-tRNA synthetase Cars 293638 NM_001106319 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006423 // cysteinyl-tRNA aminoacylation // inferred from electronic annotation /// 0006423 // cysteinyl-tRNA aminoacylation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0000049 // tRNA binding // not recorded /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004817 // cysteine-tRNA ligase activity // inferred from electronic annotation /// 0004817 // cysteine-tRNA ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1385699_at BI283897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283897 /DB_XREF=gi:14936090 /DB_XREF=UI-R-CX0s-ccx-h-11-0-UI.s1 /CLONE=UI-R-CX0s-ccx-h-11-0-UI /FEA=EST /CNT=1 /TID=Rn.78431.1 /TIER=ConsEnd /STK=0 /UG=Rn.78431 /UG_TITLE=EST, Weakly similar to S61169 hypothetical protein YDR374c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BI283897 YTH domain family, member 1 Ythdf1 296467 NM_001024756 1385700_at BF545268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545268 /DB_XREF=gi:11636375 /DB_XREF=UI-R-C0-iq-g-12-0-UI.r1 /CLONE=UI-R-C0-iq-g-12-0-UI /FEA=EST /CNT=1 /TID=Rn.23490.3 /TIER=ConsEnd /STK=0 /UG=Rn.23490 /UG_TITLE=ESTs, Weakly similar to JC2054 complement regulatory protein, 5I2 antigen precursor - rat (R.norvegicus) BF545268 complement receptor 2 Cr2 289395 NM_001105989 0002430 // complement receptor mediated signaling pathway // not recorded /// 0007165 // signal transduction // not recorded /// 0042113 // B cell activation // not recorded 0009897 // external side of plasma membrane // not recorded 0004872 // receptor activity // not recorded /// 0004875 // complement receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1385701_at AI764498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764498 /DB_XREF=gi:5210433 /DB_XREF=UI-R-Y0-abk-f-07-0-UI.s1 /CLONE=UI-R-Y0-abk-f-07-0-UI /FEA=EST /CNT=1 /TID=Rn.42058.2 /TIER=ConsEnd /STK=0 /UG=Rn.42058 /UG_TITLE=ESTs AI764498 1385702_at AA901151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901151 /DB_XREF=gi:4233652 /DB_XREF=UI-R-A1-dv-d-08-0-UI.s1 /CLONE=UI-R-A1-dv-d-08-0-UI /FEA=EST /CNT=1 /TID=Rn.15194.1 /TIER=ConsEnd /STK=0 /UG=Rn.15194 /UG_TITLE=EST AA901151 interferon activated gene 204 Ifi204 304988 NM_001012029 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045669 // positive regulation of osteoblast differentiation // not recorded 0003712 // transcription cofactor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1385703_at AA818737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818737 /DB_XREF=gi:4227417 /DB_XREF=UI-R-A0-ay-g-12-0-UI.s1 /CLONE=UI-R-A0-ay-g-12-0-UI /FEA=EST /CNT=1 /TID=Rn.16531.1 /TIER=ConsEnd /STK=0 /UG=Rn.16531 /UG_TITLE=EST AA818737 coiled-coil domain containing 25 Ccdc25 361059 NM_001108382 1385704_at AI071148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071148 /DB_XREF=gi:3397363 /DB_XREF=UI-R-C2-mt-f-12-0-UI.s1 /CLONE=UI-R-C2-mt-f-12-0-UI /FEA=EST /CNT=1 /TID=Rn.67048.1 /TIER=ConsEnd /STK=0 /UG=Rn.67048 /UG_TITLE=EST AI071148 1385705_at AI072571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072571 /DB_XREF=gi:3398765 /DB_XREF=UI-R-C2-nn-a-03-0-UI.s1 /CLONE=UI-R-C2-nn-a-03-0-UI /FEA=EST /CNT=1 /TID=Rn.9243.2 /TIER=ConsEnd /STK=0 /UG=Rn.9243 /UG_TITLE=ESTs, Weakly similar to ROK_HUMAN HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN K (R.norvegicus) AI072571 poly(rC) binding protein 3 Pcbp3 294336 NM_001011945 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded 0003723 // RNA binding // inferred from electronic annotation 1385706_at BI292758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292758 /DB_XREF=gi:14953582 /DB_XREF=UI-R-DO0-ciy-o-08-0-UI.s1 /CLONE=UI-R-DO0-ciy-o-08-0-UI /FEA=EST /CNT=1 /TID=Rn.9616.3 /TIER=ConsEnd /STK=0 /UG=Rn.9616 /UG_TITLE=ESTs BI292758 1385707_at BF550221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550221 /DB_XREF=gi:11659999 /DB_XREF=UI-R-A1-ed-g-01-0-UI.r1 /CLONE=UI-R-A1-ed-g-01-0-UI /FEA=EST /CNT=1 /TID=Rn.23016.2 /TIER=ConsEnd /STK=0 /UG=Rn.23016 /UG_TITLE=ESTs, Moderately similar to LCT2 MOUSE LEUKOCYTE CELL-DERIVED CHEMOTAXIN 2 PRECURSOR (M.musculus) BF550221 leukocyte cell-derived chemotaxin 2 Lect2 361205 NM_001108405 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded 1385708_at BG378707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378707 /DB_XREF=gi:13303179 /DB_XREF=UI-R-BT1-bnj-h-03-0-UI.s1 /CLONE=UI-R-BT1-bnj-h-03-0-UI /FEA=EST /CNT=1 /TID=Rn.66595.1 /TIER=ConsEnd /STK=0 /UG=Rn.66595 /UG_TITLE=EST BG378707 hypothetical protein LOC682010 MGC93861 682010 NM_001044281 1385709_x_at AW529028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529028 /DB_XREF=gi:7171482 /DB_XREF=UI-R-BT1-aka-g-03-0-UI.s1 /CLONE=UI-R-BT1-aka-g-03-0-UI /FEA=EST /CNT=1 /TID=Rn.16308.2 /TIER=ConsEnd /STK=0 /UG=Rn.16308 /UG_TITLE=ESTs AW529028 1385710_at BF559673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559673 /DB_XREF=gi:11669403 /DB_XREF=UI-R-C0-gt-c-08-0-UI.r1 /CLONE=UI-R-C0-gt-c-08-0-UI /FEA=EST /CNT=1 /TID=Rn.17380.2 /TIER=ConsEnd /STK=0 /UG=Rn.17380 /UG_TITLE=ESTs, Weakly similar to BCM_HUMAN B-CELL MATURATION PROTEIN (H.sapiens) BF559673 tumor necrosis factor receptor superfamily, member 17 Tnfrsf17 287034 NM_001105761 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1385711_at AW507178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW507178 /DB_XREF=gi:8133343 /DB_XREF=EST00605 /CLONE=1stB1 /FEA=EST /CNT=1 /TID=Rn.25178.2 /TIER=ConsEnd /STK=0 /UG=Rn.25178 /UG_TITLE=ESTs, Weakly similar to T20417 hypothetical protein E02H1.1 - Caenorhabditis elegans (C.elegans) AW507178 DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) Dimt1l 294718 NM_001106408 0000154 // rRNA modification // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000179 // rRNA (adenine-N6,N6-)-dimethyltransferase activity // inferred from electronic annotation /// 0008649 // rRNA methyltransferase activity // inferred from electronic annotation /// 0016433 // rRNA (adenine) methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1385712_at BF396364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396364 /DB_XREF=gi:11381336 /DB_XREF=UI-R-BS2-bdx-c-08-0-UI.s1 /CLONE=UI-R-BS2-bdx-c-08-0-UI /FEA=EST /CNT=1 /TID=Rn.33501.2 /TIER=ConsEnd /STK=0 /UG=Rn.33501 /UG_TITLE=ESTs BF396364 1385713_at BF392577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392577 /DB_XREF=gi:11377434 /DB_XREF=UI-R-CA0-bfk-g-10-0-UI.s1 /CLONE=UI-R-CA0-bfk-g-10-0-UI /FEA=EST /CNT=1 /TID=Rn.34710.2 /TIER=ConsEnd /STK=0 /UG=Rn.34710 /UG_TITLE=ESTs, Weakly similar to A53414 A-kinase anchor protein 95, AKAP95 - rat (R.norvegicus) BF392577 A kinase (PRKA) anchor protein 8-like Akap8l 299569 NM_001013946 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385714_at BF545988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545988 /DB_XREF=gi:11637143 /DB_XREF=UI-R-C2p-rp-g-04-0-UI.r1 /CLONE=UI-R-C2p-rp-g-04-0-UI /FEA=EST /CNT=1 /TID=Rn.38626.2 /TIER=ConsEnd /STK=0 /UG=Rn.38626 /UG_TITLE=ESTs, Weakly similar to YT41_CAEEL HYPOTHETICAL 136.1 KDA PROTEIN B0416.1 IN CHROMOSOME X (C.elegans) BF545988 transmembrane channel-like 4 Tmc4 308310 NM_001034104 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1385715_at AA866489 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866489 /DB_XREF=gi:4229127 /DB_XREF=UI-R-A0-bd-e-07-0-UI.s1 /CLONE=UI-R-A0-bd-e-07-0-UI /FEA=EST /CNT=1 /TID=Rn.42329.1 /TIER=ConsEnd /STK=0 /UG=Rn.42329 /UG_TITLE=EST AA866489 G protein-coupled receptor 155 Gpr155 311730 NM_001107811 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1385716_at AW522166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522166 /DB_XREF=gi:7164551 /DB_XREF=UI-R-BO0-agm-c-06-0-UI.s1 /CLONE=UI-R-BO0-agm-c-06-0-UI /FEA=EST /CNT=1 /TID=Rn.45316.1 /TIER=ConsEnd /STK=0 /UG=Rn.45316 /UG_TITLE=EST AW522166 1385717_at AW524331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524331 /DB_XREF=gi:7166716 /DB_XREF=UI-R-BO0-ahj-b-01-0-UI.s1 /CLONE=UI-R-BO0-ahj-b-01-0-UI /FEA=EST /CNT=1 /TID=Rn.45830.1 /TIER=ConsEnd /STK=0 /UG=Rn.45830 /UG_TITLE=EST AW524331 ganglioside-induced differentiation-associated-protein 1 Gdap1 312890 NM_001107897 0032526 // response to retinoic acid // not recorded 1385718_at AW530248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530248 /DB_XREF=gi:7172662 /DB_XREF=UI-R-BU0-amu-d-04-0-UI.s1 /CLONE=UI-R-BU0-amu-d-04-0-UI /FEA=EST /CNT=1 /TID=Rn.47411.1 /TIER=ConsEnd /STK=0 /UG=Rn.47411 /UG_TITLE=ESTs AW530248 coiled-coil domain containing 159 Ccdc159 300442 NM_001009667 1385719_at AW531176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531176 /DB_XREF=gi:7173590 /DB_XREF=UI-R-BT1-akv-e-11-0-UI.s1 /CLONE=UI-R-BT1-akv-e-11-0-UI /FEA=EST /CNT=1 /TID=Rn.47661.1 /TIER=ConsEnd /STK=0 /UG=Rn.47661 /UG_TITLE=EST AW531176 1385720_at AW533911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533911 /DB_XREF=gi:7176372 /DB_XREF=UI-R-C4-alr-b-08-0-UI.s1 /CLONE=UI-R-C4-alr-b-08-0-UI /FEA=EST /CNT=1 /TID=Rn.48218.1 /TIER=ConsEnd /STK=0 /UG=Rn.48218 /UG_TITLE=EST AW533911 leukocyte receptor cluster (LRC) member 1 Leng1 292535 NM_001106218 0004872 // receptor activity // inferred from electronic annotation 1385721_at AW534366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534366 /DB_XREF=gi:7176780 /DB_XREF=UI-R-C4-alo-f-06-0-UI.s1 /CLONE=UI-R-C4-alo-f-06-0-UI /FEA=EST /CNT=1 /TID=Rn.48315.1 /TIER=ConsEnd /STK=0 /UG=Rn.48315 /UG_TITLE=ESTs AW534366 sperm associated antigen 16 Spag16 501158 NM_001134728 0007283 // spermatogenesis // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005874 // microtubule // not recorded /// 0005930 // axoneme // not recorded /// 0035086 // flagellar axoneme // not recorded 0005515 // protein binding // not recorded 1385722_at AW534696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534696 /DB_XREF=gi:7177110 /DB_XREF=UI-R-BS0-ant-g-10-0-UI.s1 /CLONE=UI-R-BS0-ant-g-10-0-UI /FEA=EST /CNT=1 /TID=Rn.48377.1 /TIER=ConsEnd /STK=0 /UG=Rn.48377 /UG_TITLE=EST AW534696 single-minded homolog 2 (Drosophila) Sim2 304071 NM_001107108 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0009880 // embryonic pattern specification // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030324 // lung development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1385723_at BE097133 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097133 /DB_XREF=gi:8488064 /DB_XREF=UI-R-BO1-apt-f-01-0-UI.s1 /CLONE=UI-R-BO1-apt-f-01-0-UI /FEA=EST /CNT=1 /TID=Rn.49544.1 /TIER=ConsEnd /STK=0 /UG=Rn.49544 /UG_TITLE=EST BE097133 1385724_at BE097295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097295 /DB_XREF=gi:8488226 /DB_XREF=UI-R-BO1-apv-f-09-0-UI.s1 /CLONE=UI-R-BO1-apv-f-09-0-UI /FEA=EST /CNT=1 /TID=Rn.49586.1 /TIER=ConsEnd /STK=0 /UG=Rn.49586 /UG_TITLE=EST BE097295 coiled-coil domain containing 74A Ccdc74a 680752 XM_001058720 1385725_at BE101780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101780 /DB_XREF=gi:8493878 /DB_XREF=UI-R-BT1-aqh-c-07-0-UI.s1 /CLONE=UI-R-BT1-aqh-c-07-0-UI /FEA=EST /CNT=1 /TID=Rn.50126.1 /TIER=ConsEnd /STK=0 /UG=Rn.50126 /UG_TITLE=EST, Weakly similar to H2BT RAT HISTONE H2B, TESTIS (R.norvegicus) BE101780 similar to HIStone family member (his-41) LOC684444 684444 XM_001070426 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1385726_at BE106840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106840 /DB_XREF=gi:8498942 /DB_XREF=UI-R-BT1-ast-g-09-0-UI.s1 /CLONE=UI-R-BT1-ast-g-09-0-UI /FEA=EST /CNT=1 /TID=Rn.51057.1 /TIER=ConsEnd /STK=0 /UG=Rn.51057 /UG_TITLE=EST BE106840 1385727_at BE107623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107623 /DB_XREF=gi:8499728 /DB_XREF=UI-R-CA0-awv-g-11-0-UI.s1 /CLONE=UI-R-CA0-awv-g-11-0-UI /FEA=EST /CNT=1 /TID=Rn.51227.1 /TIER=ConsEnd /STK=0 /UG=Rn.51227 /UG_TITLE=EST BE107623 FGFR1 oncogene partner 2 Fgfr1op2 362463 NM_201421 0009611 // response to wounding // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation 1385728_at BE108006 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108006 /DB_XREF=gi:8500111 /DB_XREF=UI-R-CA0-awz-c-12-0-UI.s1 /CLONE=UI-R-CA0-awz-c-12-0-UI /FEA=EST /CNT=1 /TID=Rn.51376.1 /TIER=ConsEnd /STK=0 /UG=Rn.51376 /UG_TITLE=EST BE108006 1385729_at BE108687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108687 /DB_XREF=gi:8500792 /DB_XREF=UI-R-CA0-axh-c-03-0-UI.s1 /CLONE=UI-R-CA0-axh-c-03-0-UI /FEA=EST /CNT=1 /TID=Rn.51583.1 /TIER=ConsEnd /STK=0 /UG=Rn.51583 /UG_TITLE=EST BE108687 1385730_at BE108897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108897 /DB_XREF=gi:8501002 /DB_XREF=UI-R-BS1-ayz-f-07-0-UI.s1 /CLONE=UI-R-BS1-ayz-f-07-0-UI /FEA=EST /CNT=1 /TID=Rn.51637.1 /TIER=ConsEnd /STK=0 /UG=Rn.51637 /UG_TITLE=EST, Moderately similar to T43465 hypothetical protein DKFZp434N0223.1 (H.sapiens) BE108897 serine/threonine kinase 36 (fused homolog, Drosophila) Stk36 301516 NM_001173986 /// XM_001058046 /// XM_217435 0006468 // protein phosphorylation // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0051090 // regulation of transcription factor activity // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded 1385731_at BE113552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113552 /DB_XREF=gi:8505657 /DB_XREF=UI-R-CA0-axq-f-06-0-UI.s1 /CLONE=UI-R-CA0-axq-f-06-0-UI /FEA=EST /CNT=1 /TID=Rn.52214.1 /TIER=ConsEnd /STK=0 /UG=Rn.52214 /UG_TITLE=EST BE113552 1385732_at BE115744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115744 /DB_XREF=gi:8507849 /DB_XREF=UI-R-CA0-axs-d-06-0-UI.s1 /CLONE=UI-R-CA0-axs-d-06-0-UI /FEA=EST /CNT=1 /TID=Rn.52556.1 /TIER=ConsEnd /STK=0 /UG=Rn.52556 /UG_TITLE=EST BE115744 1385733_at BE116198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116198 /DB_XREF=gi:8508303 /DB_XREF=UI-R-BS1-aya-e-09-0-UI.s1 /CLONE=UI-R-BS1-aya-e-09-0-UI /FEA=EST /CNT=1 /TID=Rn.52638.1 /TIER=ConsEnd /STK=0 /UG=Rn.52638 /UG_TITLE=EST, Moderately similar to T12524 hypothetical protein DKFZp434L013.1 (H.sapiens) BE116198 exonuclease 1 Exo1 305000 NM_001107198 0002455 // humoral immune response mediated by circulating immunoglobulin // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006298 // mismatch repair // not recorded /// 0006310 // DNA recombination // not recorded /// 0016446 // somatic hypermutation of immunoglobulin genes // not recorded /// 0045190 // isotype switching // not recorded 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035312 // 5'-3' exodeoxyribonuclease activity // not recorded /// 0043566 // structure-specific DNA binding // not recorded /// 0045145 // single-stranded DNA specific 5'-3' exodeoxyribonuclease activity // not recorded /// 0048256 // flap endonuclease activity // not recorded /// 0051908 // double-stranded DNA specific 5'-3' exodeoxyribonuclease activity // not recorded 1385734_at BE118753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118753 /DB_XREF=gi:8510858 /DB_XREF=UI-R-CA0-bab-c-12-0-UI.s1 /CLONE=UI-R-CA0-bab-c-12-0-UI /FEA=EST /CNT=1 /TID=Rn.53044.1 /TIER=ConsEnd /STK=0 /UG=Rn.53044 /UG_TITLE=EST BE118753 1385735_at BE119668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119668 /DB_XREF=gi:8511773 /DB_XREF=UI-R-CA0-baz-e-10-0-UI.s1 /CLONE=UI-R-CA0-baz-e-10-0-UI /FEA=EST /CNT=1 /TID=Rn.53313.1 /TIER=ConsEnd /STK=0 /UG=Rn.53313 /UG_TITLE=EST BE119668 DnaJ (Hsp40) homolog, subfamily B, member 7 Dnajb7 685839 NM_001130510 0006457 // protein folding // inferred from electronic annotation 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1385736_at BE119988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119988 /DB_XREF=gi:8512093 /DB_XREF=UI-R-CA0-bao-c-10-0-UI.s1 /CLONE=UI-R-CA0-bao-c-10-0-UI /FEA=EST /CNT=1 /TID=Rn.53419.1 /TIER=ConsEnd /STK=0 /UG=Rn.53419 /UG_TITLE=EST, Moderately similar to BTG4_MOUSE BTG4 protein (PC3b) (M.musculus) BE119988 B-cell translocation gene 4 Btg4 315650 NM_001013176 1385737_at BE121207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121207 /DB_XREF=gi:8513312 /DB_XREF=UI-R-CA0-bas-c-06-0-UI.s1 /CLONE=UI-R-CA0-bas-c-06-0-UI /FEA=EST /CNT=1 /TID=Rn.53780.1 /TIER=ConsEnd /STK=0 /UG=Rn.53780 /UG_TITLE=EST BE121207 1385738_at BE112479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112479 /DB_XREF=gi:8504584 /DB_XREF=UI-R-BJ1-avi-b-08-0-UI.s1 /CLONE=UI-R-BJ1-avi-b-08-0-UI /FEA=EST /CNT=1 /TID=Rn.53857.2 /TIER=ConsEnd /STK=0 /UG=Rn.53857 /UG_TITLE=ESTs BE112479 1385739_at BE120816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120816 /DB_XREF=gi:8512921 /DB_XREF=UI-R-BS1-azs-h-03-0-UI.s1 /CLONE=UI-R-BS1-azs-h-03-0-UI /FEA=EST /CNT=1 /TID=Rn.53919.1 /TIER=ConsEnd /STK=0 /UG=Rn.53919 /UG_TITLE=EST BE120816 1385740_at AW434380 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434380 /DB_XREF=gi:6965687 /DB_XREF=UI-R-BJ0p-afl-e-03-0-UI.s1 /CLONE=UI-R-BJ0p-afl-e-03-0-UI /FEA=EST /CNT=1 /TID=Rn.54300.1 /TIER=ConsEnd /STK=0 /UG=Rn.54300 /UG_TITLE=EST AW434380 leucine rich repeat containing 27 Lrrc27 499281 NM_001113789 /// NM_001143756 0005515 // protein binding // inferred from electronic annotation 1385741_at BF566724 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF566724 /DB_XREF=gi:11676454 /DB_XREF=UI-R-BJ0p-aff-a-04-0-UI.r1 /CLONE=UI-R-BJ0p-aff-a-04-0-UI /FEA=EST /CNT=1 /TID=Rn.54308.2 /TIER=ConsEnd /STK=0 /UG=Rn.54308 /UG_TITLE=ESTs, Moderately similar to T14772 hypothetical protein DKFZp566I174.1 (H.sapiens) BF566724 similar to RIKEN cDNA 1700052N19 RGD1305235 292267 NM_001017447 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1385742_at BF388632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388632 /DB_XREF=gi:11373456 /DB_XREF=UI-R-BS2-bdd-g-05-0-UI.s1 /CLONE=UI-R-BS2-bdd-g-05-0-UI /FEA=EST /CNT=1 /TID=Rn.56787.1 /TIER=ConsEnd /STK=0 /UG=Rn.56787 /UG_TITLE=EST, Weakly similar to Ig lambda-2 chain C region (R.norvegicus) BF388632 1385743_at BF388856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388856 /DB_XREF=gi:11373680 /DB_XREF=UI-R-BS2-bdf-d-07-0-UI.s1 /CLONE=UI-R-BS2-bdf-d-07-0-UI /FEA=EST /CNT=1 /TID=Rn.56830.1 /TIER=ConsEnd /STK=0 /UG=Rn.56830 /UG_TITLE=EST BF388856 chemokine-like factor Cklf 245978 NM_139111 0006935 // chemotaxis // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0030593 // neutrophil chemotaxis // inferred from direct assay /// 0030593 // neutrophil chemotaxis // not recorded /// 0030595 // leukocyte chemotaxis // inferred from direct assay /// 0032940 // secretion by cell // not recorded /// 0048246 // macrophage chemotaxis // not recorded /// 0048247 // lymphocyte chemotaxis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // not recorded 1385744_at BF389238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389238 /DB_XREF=gi:11374068 /DB_XREF=UI-R-BS2-bdi-d-12-0-UI.s1 /CLONE=UI-R-BS2-bdi-d-12-0-UI /FEA=EST /CNT=1 /TID=Rn.56909.1 /TIER=ConsEnd /STK=0 /UG=Rn.56909 /UG_TITLE=EST BF389238 Thrombospondin, type I, domain containing 7B Thsd7b 289007 NM_001191669 /// XM_002724864 /// XM_222597 1385745_at BF389477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389477 /DB_XREF=gi:11374311 /DB_XREF=UI-R-CJ0-bfc-c-03-0-UI.s1 /CLONE=UI-R-CJ0-bfc-c-03-0-UI /FEA=EST /CNT=1 /TID=Rn.56955.1 /TIER=ConsEnd /STK=0 /UG=Rn.56955 /UG_TITLE=EST BF389477 hypothetical protein LOC100365056 LOC100365056 100365056 XM_002726586 1385746_at BF389622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389622 /DB_XREF=gi:11374457 /DB_XREF=UI-R-CJ0-bfd-h-03-0-UI.s1 /CLONE=UI-R-CJ0-bfd-h-03-0-UI /FEA=EST /CNT=1 /TID=Rn.56977.1 /TIER=ConsEnd /STK=0 /UG=Rn.56977 /UG_TITLE=EST BF389622 hypothetical protein LOC681167 LOC681167 681167 XM_001060573 /// XM_002727562 1385747_at BF390682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390682 /DB_XREF=gi:11375529 /DB_XREF=UI-R-CA1-bco-a-12-0-UI.s1 /CLONE=UI-R-CA1-bco-a-12-0-UI /FEA=EST /CNT=1 /TID=Rn.57234.1 /TIER=ConsEnd /STK=0 /UG=Rn.57234 /UG_TITLE=EST BF390682 1385748_at BF390864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390864 /DB_XREF=gi:11375711 /DB_XREF=UI-R-CA1-bci-d-03-0-UI.s1 /CLONE=UI-R-CA1-bci-d-03-0-UI /FEA=EST /CNT=1 /TID=Rn.57304.1 /TIER=ConsEnd /STK=0 /UG=Rn.57304 /UG_TITLE=EST BF390864 spermatogenesis associated 21 Spata21 366491 NM_001004447 0005509 // calcium ion binding // inferred from electronic annotation 1385749_at BF392886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392886 /DB_XREF=gi:11377745 /DB_XREF=UI-R-CA0-bfq-d-07-0-UI.s1 /CLONE=UI-R-CA0-bfq-d-07-0-UI /FEA=EST /CNT=1 /TID=Rn.57932.2 /TIER=ConsEnd /STK=0 /UG=Rn.57932 /UG_TITLE=ESTs BF392886 1385750_at BF393402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393402 /DB_XREF=gi:11378263 /DB_XREF=UI-R-CA0-bgc-e-04-0-UI.s1 /CLONE=UI-R-CA0-bgc-e-04-0-UI /FEA=EST /CNT=1 /TID=Rn.58047.1 /TIER=ConsEnd /STK=0 /UG=Rn.58047 /UG_TITLE=EST BF393402 1385751_at BF408413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408413 /DB_XREF=gi:11396388 /DB_XREF=UI-R-BJ2-brc-e-01-0-UI.s1 /CLONE=UI-R-BJ2-brc-e-01-0-UI /FEA=EST /CNT=1 /TID=Rn.58085.2 /TIER=ConsEnd /STK=0 /UG=Rn.58085 /UG_TITLE=ESTs, Weakly similar to TSP4 RAT THROMBOSPONDIN 4 PRECURSOR (R.norvegicus) BF408413 thrombospondin 2 Thbs2 292406 NM_001169138 0007155 // cell adhesion // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // inferred from direct assay /// 0016525 // negative regulation of angiogenesis // inferred from expression pattern /// 0051965 // positive regulation of synaptogenesis // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0031093 // platelet alpha granule lumen // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1385752_at BF394136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394136 /DB_XREF=gi:11379000 /DB_XREF=UI-R-CA0-bha-b-01-0-UI.s1 /CLONE=UI-R-CA0-bha-b-01-0-UI /FEA=EST /CNT=1 /TID=Rn.58222.1 /TIER=ConsEnd /STK=0 /UG=Rn.58222 /UG_TITLE=EST BF394136 1385753_at BF395818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395818 /DB_XREF=gi:11380789 /DB_XREF=UI-R-BT1-bkc-f-05-0-UI.s1 /CLONE=UI-R-BT1-bkc-f-05-0-UI /FEA=EST /CNT=1 /TID=Rn.58460.1 /TIER=ConsEnd /STK=0 /UG=Rn.58460 /UG_TITLE=EST BF395818 1385754_s_at BE105879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105879 /DB_XREF=gi:8497981 /DB_XREF=UI-R-BO1-asj-c-06-0-UI.s1 /CLONE=UI-R-BO1-asj-c-06-0-UI /FEA=EST /CNT=1 /TID=Rn.58471.2 /TIER=ConsEnd /STK=0 /UG=Rn.58471 /UG_TITLE=ESTs BE105879 leucine rich repeat containing 4 Lrrc4 641521 NM_001037336 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1385755_at BF396388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396388 /DB_XREF=gi:11381360 /DB_XREF=UI-R-BS2-bdx-e-08-0-UI.s1 /CLONE=UI-R-BS2-bdx-e-08-0-UI /FEA=EST /CNT=1 /TID=Rn.58594.1 /TIER=ConsEnd /STK=0 /UG=Rn.58594 /UG_TITLE=EST BF396388 1385756_at BF396498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396498 /DB_XREF=gi:11381472 /DB_XREF=UI-R-BS2-bdy-h-01-0-UI.s1 /CLONE=UI-R-BS2-bdy-h-01-0-UI /FEA=EST /CNT=1 /TID=Rn.58614.1 /TIER=ConsEnd /STK=0 /UG=Rn.58614 /UG_TITLE=EST, Moderately similar to ITH3 RAT INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN H3 PRECURSOR (R.norvegicus) BF396498 inter-alpha trypsin inhibitor, heavy chain 1 Itih1 306251 NM_001107291 0030212 // hyaluronan metabolic process // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation 1385757_at BF397258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397258 /DB_XREF=gi:11382241 /DB_XREF=UI-R-BS2-bek-c-06-0-UI.s1 /CLONE=UI-R-BS2-bek-c-06-0-UI /FEA=EST /CNT=1 /TID=Rn.58788.1 /TIER=ConsEnd /STK=0 /UG=Rn.58788 /UG_TITLE=EST BF397258 1385758_at BF399333 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399333 /DB_XREF=gi:11384337 /DB_XREF=UI-R-CA1-bjb-e-08-0-UI.s1 /CLONE=UI-R-CA1-bjb-e-08-0-UI /FEA=EST /CNT=1 /TID=Rn.59342.1 /TIER=ConsEnd /STK=0 /UG=Rn.59342 /UG_TITLE=EST BF399333 SAPS domain family, member 1 Saps1 361502 NM_001135849 0043666 // regulation of phosphoprotein phosphatase activity // not recorded 0005515 // protein binding // not recorded /// 0019903 // protein phosphatase binding // not recorded 1385759_at BF399855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399855 /DB_XREF=gi:11384865 /DB_XREF=UI-R-CA1-bhz-g-01-0-UI.s1 /CLONE=UI-R-CA1-bhz-g-01-0-UI /FEA=EST /CNT=1 /TID=Rn.59484.1 /TIER=ConsEnd /STK=0 /UG=Rn.59484 /UG_TITLE=EST, Weakly similar to PLASMINOGEN ACTIVATOR INHIBITOR-2, TYPE A (R.norvegicus) BF399855 serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10 Serpinb10 266775 NM_153733 0045861 // negative regulation of proteolysis // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from direct assay /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1385760_at BF400633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400633 /DB_XREF=gi:11388608 /DB_XREF=UI-R-CA0-bhd-f-10-0-UI.s1 /CLONE=UI-R-CA0-bhd-f-10-0-UI /FEA=EST /CNT=1 /TID=Rn.59600.1 /TIER=ConsEnd /STK=0 /UG=Rn.59600 /UG_TITLE=EST BF400633 1385761_s_at BF400633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400633 /DB_XREF=gi:11388608 /DB_XREF=UI-R-CA0-bhd-f-10-0-UI.s1 /CLONE=UI-R-CA0-bhd-f-10-0-UI /FEA=EST /CNT=1 /TID=Rn.59600.1 /TIER=ConsEnd /STK=0 /UG=Rn.59600 /UG_TITLE=EST BF400633 1385762_at BF402255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402255 /DB_XREF=gi:11390230 /DB_XREF=UI-R-CA0-bhq-c-08-0-UI.s1 /CLONE=UI-R-CA0-bhq-c-08-0-UI /FEA=EST /CNT=1 /TID=Rn.60009.1 /TIER=ConsEnd /STK=0 /UG=Rn.60009 /UG_TITLE=EST BF402255 histamine N-methyltransferase Hnmt 81676 NM_031044 0002347 // response to tumor cell // inferred from expression pattern /// 0006950 // response to stress // inferred from expression pattern /// 0006972 // hyperosmotic response // inferred from expression pattern /// 0007420 // brain development // inferred from expression pattern /// 0014075 // response to amine stimulus // inferred from expression pattern /// 0032259 // methylation // not recorded /// 0042220 // response to cocaine // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0070555 // response to interleukin-1 // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008170 // N-methyltransferase activity // not recorded /// 0008170 // N-methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046539 // histamine N-methyltransferase activity // inferred from direct assay /// 0046539 // histamine N-methyltransferase activity // inferred from electronic annotation 1385763_at BF403691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403691 /DB_XREF=gi:11391666 /DB_XREF=UI-R-CA1-bix-j-18-0-UI.s1 /CLONE=UI-R-CA1-bix-j-18-0-UI /FEA=EST /CNT=1 /TID=Rn.60346.1 /TIER=ConsEnd /STK=0 /UG=Rn.60346 /UG_TITLE=EST, Moderately similar to CRET MOUSE TESTATIN PRECURSOR (M.musculus) BF403691 cystatin 9-like Cst9l 362231 NM_001108597 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation 1385764_at BF405897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405897 /DB_XREF=gi:11393872 /DB_XREF=UI-R-CA1-bii-c-12-0-UI.s1 /CLONE=UI-R-CA1-bii-c-12-0-UI /FEA=EST /CNT=1 /TID=Rn.60856.1 /TIER=ConsEnd /STK=0 /UG=Rn.60856 /UG_TITLE=EST, Weakly similar to CMC2_CAEEL Probable calcium-binding mitochondrial carrier F55A11.4 (C.elegans) BF405897 solute carrier family 25, member 41 Slc25a41 301114 NM_001106874 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1385765_at BF406563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406563 /DB_XREF=gi:11394538 /DB_XREF=UI-R-BJ2-bpu-e-09-0-UI.s1 /CLONE=UI-R-BJ2-bpu-e-09-0-UI /FEA=EST /CNT=1 /TID=Rn.60982.1 /TIER=ConsEnd /STK=0 /UG=Rn.60982 /UG_TITLE=EST BF406563 1385766_at BF410121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410121 /DB_XREF=gi:11398096 /DB_XREF=UI-R-CA1-bjt-g-06-0-UI.s1 /CLONE=UI-R-CA1-bjt-g-06-0-UI /FEA=EST /CNT=1 /TID=Rn.61586.1 /TIER=ConsEnd /STK=0 /UG=Rn.61586 /UG_TITLE=EST BF410121 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11 (human) Als2cr11 501147 NM_001024363 1385767_at BF411017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411017 /DB_XREF=gi:11398992 /DB_XREF=UI-R-CN0-bmi-g-04-0-UI.s1 /CLONE=UI-R-CN0-bmi-g-04-0-UI /FEA=EST /CNT=1 /TID=Rn.61796.1 /TIER=ConsEnd /STK=0 /UG=Rn.61796 /UG_TITLE=EST BF411017 cell adhesion molecule JCAM LOC304000 304000 NM_001006990 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 1385768_at BF412738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412738 /DB_XREF=gi:11400727 /DB_XREF=UI-R-BT1-bnt-f-11-0-UI.s1 /CLONE=UI-R-BT1-bnt-f-11-0-UI /FEA=EST /CNT=1 /TID=Rn.62157.1 /TIER=ConsEnd /STK=0 /UG=Rn.62157 /UG_TITLE=EST BF412738 1385769_at BF412992 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412992 /DB_XREF=gi:11400981 /DB_XREF=UI-R-BT1-bnv-c-08-0-UI.s1 /CLONE=UI-R-BT1-bnv-c-08-0-UI /FEA=EST /CNT=1 /TID=Rn.62218.1 /TIER=ConsEnd /STK=0 /UG=Rn.62218 /UG_TITLE=EST BF412992 outer dense fiber of sperm tails 3 Odf3 365387 NM_001108924 0001520 // outer dense fiber // not recorded 1385770_at BF415530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415530 /DB_XREF=gi:11403519 /DB_XREF=UI-R-CA1-bka-b-08-0-UI.s1 /CLONE=UI-R-CA1-bka-b-08-0-UI /FEA=EST /CNT=1 /TID=Rn.62729.1 /TIER=ConsEnd /STK=0 /UG=Rn.62729 /UG_TITLE=EST, Moderately similar to T42683 hypothetical protein DKFZp434E1822.1 (H.sapiens) BF415530 unc-51-like kinase 4 (C. elegans) Ulk4 363167 XM_001077978 /// XM_343506 0006468 // protein phosphorylation // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1385771_at BF415532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415532 /DB_XREF=gi:11403521 /DB_XREF=UI-R-CA1-bka-b-11-0-UI.s1 /CLONE=UI-R-CA1-bka-b-11-0-UI /FEA=EST /CNT=1 /TID=Rn.62731.1 /TIER=ConsEnd /STK=0 /UG=Rn.62731 /UG_TITLE=EST BF415532 1385772_at BF416058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416058 /DB_XREF=gi:11404047 /DB_XREF=UI-R-CA0-bkh-f-11-0-UI.s1 /CLONE=UI-R-CA0-bkh-f-11-0-UI /FEA=EST /CNT=1 /TID=Rn.62906.2 /TIER=ConsEnd /STK=0 /UG=Rn.62906 /UG_TITLE=ESTs BF416058 1385773_at BF416395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416395 /DB_XREF=gi:11404384 /DB_XREF=UI-R-CA0-bks-b-02-0-UI.s1 /CLONE=UI-R-CA0-bks-b-02-0-UI /FEA=EST /CNT=1 /TID=Rn.63009.1 /TIER=ConsEnd /STK=0 /UG=Rn.63009 /UG_TITLE=EST BF416395 1385774_at BF416401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416401 /DB_XREF=gi:11404390 /DB_XREF=UI-R-CA0-bks-b-09-0-UI.s1 /CLONE=UI-R-CA0-bks-b-09-0-UI /FEA=EST /CNT=1 /TID=Rn.63011.1 /TIER=ConsEnd /STK=0 /UG=Rn.63011 /UG_TITLE=EST BF416401 radial spokehead-like 1 Rshl1 292684 NM_001024748 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 1385775_at BF416686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416686 /DB_XREF=gi:11404715 /DB_XREF=UI-R-CN0-bkz-b-10-0-UI.s1 /CLONE=UI-R-CN0-bkz-b-10-0-UI /FEA=EST /CNT=1 /TID=Rn.63133.1 /TIER=ConsEnd /STK=0 /UG=Rn.63133 /UG_TITLE=EST BF416686 1385776_at BE111954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111954 /DB_XREF=gi:8504059 /DB_XREF=UI-R-BJ1-ave-a-04-0-UI.s1 /CLONE=UI-R-BJ1-ave-a-04-0-UI /FEA=EST /CNT=1 /TID=Rn.65996.1 /TIER=ConsEnd /STK=0 /UG=Rn.65996 /UG_TITLE=EST, Weakly similar to HYPOTHETICAL PROTEIN LAMBDA-SP34 (M.musculus) BE111954 1385777_at BE101079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101079 /DB_XREF=gi:8492986 /DB_XREF=UI-R-BJ1-aty-h-07-0-UI.s1 /CLONE=UI-R-BJ1-aty-h-07-0-UI /FEA=EST /CNT=1 /TID=Rn.68503.1 /TIER=ConsEnd /STK=0 /UG=Rn.68503 /UG_TITLE=EST BE101079 similar to F43G9.2 LOC681647 681647 XM_001057182 0016998 // cell wall macromolecule catabolic process // inferred from electronic annotation 1385778_at BF409913 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409913 /DB_XREF=gi:11397888 /DB_XREF=UI-R-CA1-bjy-c-06-0-UI.s1 /CLONE=UI-R-CA1-bjy-c-06-0-UI /FEA=EST /CNT=1 /TID=Rn.71619.1 /TIER=ConsEnd /STK=0 /UG=Rn.71619 /UG_TITLE=EST BF409913 1385779_at BF413917 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413917 /DB_XREF=gi:11401906 /DB_XREF=UI-R-BJ2-bok-c-08-0-UI.s1 /CLONE=UI-R-BJ2-bok-c-08-0-UI /FEA=EST /CNT=1 /TID=Rn.72005.1 /TIER=ConsEnd /STK=0 /UG=Rn.72005 /UG_TITLE=EST, Highly similar to CHD4_HUMAN CHROMODOMAIN HELICASE-DNA-BINDING PROTEIN 4 (H.sapiens) BF413917 chromodomain helicase DNA binding protein 4 Chd4 117535 XM_001063352 /// XM_232354 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0007231 // osmosensory signaling pathway // non-traceable author statement /// 0045449 // regulation of transcription // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0016581 // NuRD complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation 1385780_at BF416348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416348 /DB_XREF=gi:11404337 /DB_XREF=UI-R-CA0-bkj-e-01-0-UI.s1 /CLONE=UI-R-CA0-bkj-e-01-0-UI /FEA=EST /CNT=1 /TID=Rn.72167.1 /TIER=ConsEnd /STK=0 /UG=Rn.72167 /UG_TITLE=EST BF416348 1385781_at BF397986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397986 /DB_XREF=gi:11382966 /DB_XREF=UI-R-BS2-bef-h-10-0-UI.s1 /CLONE=UI-R-BS2-bef-h-10-0-UI /FEA=EST /CNT=1 /TID=Rn.72855.1 /TIER=ConsEnd /STK=0 /UG=Rn.72855 /UG_TITLE=ESTs BF397986 excision repair cross-complementing rodent repair deficiency complementation group 6 - like Ercc6l 317252 XM_001070442 /// XM_228546 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1385782_at AW524067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524067 /DB_XREF=gi:7166452 /DB_XREF=UI-R-BO0-ahr-b-06-0-UI.s1 /CLONE=UI-R-BO0-ahr-b-06-0-UI /FEA=EST /CNT=1 /TID=Rn.74455.1 /TIER=ConsEnd /STK=0 /UG=Rn.74455 /UG_TITLE=EST AW524067 1385783_at BF418697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418697 /DB_XREF=gi:11406686 /DB_XREF=UI-R-BJ2-bqi-h-09-0-UI.s1 /CLONE=UI-R-BJ2-bqi-h-09-0-UI /FEA=EST /CNT=1 /TID=Rn.76077.1 /TIER=ConsEnd /STK=0 /UG=Rn.76077 /UG_TITLE=EST BF418697 WW and C2 domain containing 2 Wwc2 498630 NM_001109111 0005515 // protein binding // inferred from electronic annotation 1385784_at BF523821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523821 /DB_XREF=gi:11631788 /DB_XREF=UI-R-Y0-acf-d-01-0-UI.r1 /CLONE=UI-R-Y0-acf-d-01-0-UI /FEA=EST /CNT=1 /TID=Rn.26573.2 /TIER=ConsEnd /STK=0 /UG=Rn.26573 /UG_TITLE=ESTs, Weakly similar to JG0168 gob-5 protein - mouse (M.musculus) BF523821 chloride channel calcium activated 4-like Clca4l 499721 NM_001077356 1385785_at BI278869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278869 /DB_XREF=gi:14926133 /DB_XREF=UI-R-CX0-bwx-h-05-0-UI.s1 /CLONE=UI-R-CX0-bwx-h-05-0-UI /FEA=EST /CNT=1 /TID=Rn.77856.1 /TIER=ConsEnd /STK=0 /UG=Rn.77856 /UG_TITLE=EST, Weakly similar to aristaless (Drosophila) homeobox (Rattus norvegicus) (R.norvegicus) BI278869 reproductive homeobox 4G Rhox4g 313451 NM_001024889 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1385786_at AA860039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA860039 /DB_XREF=gi:4230600 /DB_XREF=UI-R-E0-bz-f-06-0-UI.s2 /CLONE=UI-R-E0-bz-f-06-0-UI /FEA=EST /CNT=1 /TID=Rn.42615.1 /TIER=ConsEnd /STK=0 /UG=Rn.42615 /UG_TITLE=EST AA860039 1385787_at AI059580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059580 /DB_XREF=gi:3333357 /DB_XREF=UI-R-C1-lj-e-02-0-UI.s1 /CLONE=UI-R-C1-lj-e-02-0-UI /FEA=EST /CNT=1 /TID=Rn.19219.1 /TIER=ConsEnd /STK=0 /UG=Rn.19219 /UG_TITLE=EST AI059580 ring finger protein 141 rnf141 308900 NM_001001800 0006355 // regulation of transcription, DNA-dependent // not recorded 0003677 // DNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385788_at AW534949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534949 /DB_XREF=gi:7177363 /DB_XREF=UI-R-BS0-any-d-05-0-UI.s1 /CLONE=UI-R-BS0-any-d-05-0-UI /FEA=EST /CNT=1 /TID=Rn.48401.1 /TIER=ConsEnd /STK=0 /UG=Rn.48401 /UG_TITLE=EST AW534949 Eph receptor B3 Ephb3 287989 NM_001105868 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0021952 // central nervous system projection neuron axonogenesis // not recorded /// 0031290 // retinal ganglion cell axon guidance // not recorded 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005003 // ephrin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008046 // axon guidance receptor activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1385789_at BF402317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402317 /DB_XREF=gi:11390292 /DB_XREF=UI-R-CA0-bhy-f-07-0-UI.s1 /CLONE=UI-R-CA0-bhy-f-07-0-UI /FEA=EST /CNT=1 /TID=Rn.60025.1 /TIER=ConsEnd /STK=0 /UG=Rn.60025 /UG_TITLE=EST, Weakly similar to SOMATOTROPIN PRECURSOR (R.norvegicus) BF402317 1385790_at BF560024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF560024 /DB_XREF=gi:11669754 /DB_XREF=UI-R-C0-hc-g-03-0-UI.r1 /CLONE=UI-R-C0-hc-g-03-0-UI /FEA=EST /CNT=1 /TID=Rn.21494.2 /TIER=ConsEnd /STK=0 /UG=Rn.21494 /UG_TITLE=ESTs BF560024 membrane-associated ring finger (C3HC4) 5 March5 294079 NM_001106372 0008270 // zinc ion binding // inferred from electronic annotation 1385791_at BE112294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112294 /DB_XREF=gi:8504399 /DB_XREF=UI-R-BJ1-avl-h-12-0-UI.s1 /CLONE=UI-R-BJ1-avl-h-12-0-UI /FEA=EST /CNT=1 /TID=Rn.52066.1 /TIER=ConsEnd /STK=0 /UG=Rn.52066 /UG_TITLE=EST, Weakly similar to VIL1 MOUSE VILLIN (M.musculus) BE112294 villin-like Vill 301057 NM_001191617 /// XM_001077346 /// XM_002729983 /// XM_217296 0007010 // cytoskeleton organization // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation 1385792_at BF550897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550897 /DB_XREF=gi:11660627 /DB_XREF=UI-R-C1-jz-g-04-0-UI.r1 /CLONE=UI-R-C1-jz-g-04-0-UI /FEA=EST /CNT=1 /TID=Rn.16254.2 /TIER=ConsEnd /STK=0 /UG=Rn.16254 /UG_TITLE=ESTs BF550897 family with sequence similarity 132, member A Fam132a 313774 NM_001108000 1385793_at AI045120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045120 /DB_XREF=gi:3291939 /DB_XREF=UI-R-C1-kg-d-04-0-UI.s1 /CLONE=UI-R-C1-kg-d-04-0-UI /FEA=EST /CNT=1 /TID=Rn.42722.1 /TIER=ConsEnd /STK=0 /UG=Rn.42722 /UG_TITLE=EST AI045120 1385794_at BF403295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403295 /DB_XREF=gi:11391270 /DB_XREF=UI-R-CA1-biy-o-13-0-UI.s1 /CLONE=UI-R-CA1-biy-o-13-0-UI /FEA=EST /CNT=1 /TID=Rn.60247.1 /TIER=ConsEnd /STK=0 /UG=Rn.60247 /UG_TITLE=EST BF403295 hypothetical protein LOC681210 MGC94891 681210 NM_001044277 1385795_at AA859828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859828 /DB_XREF=gi:4230368 /DB_XREF=UI-R-E0-cc-f-11-0-UI.s1 /CLONE=UI-R-E0-cc-f-11-0-UI /FEA=EST /CNT=1 /TID=Rn.782.1 /TIER=ConsEnd /STK=0 /UG=Rn.782 /UG_TITLE=EST AA859828 1385796_at AI501224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501224 /DB_XREF=gi:4399075 /DB_XREF=UI-R-C2p-ry-c-04-0-UI.s1 /CLONE=UI-R-C2p-ry-c-04-0-UI /FEA=EST /CNT=1 /TID=Rn.35306.1 /TIER=ConsEnd /STK=0 /UG=Rn.35306 /UG_TITLE=EST AI501224 1385797_at BF525047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF525047 /DB_XREF=gi:11633014 /DB_XREF=UI-R-AD0-vz-c-10-0-UI.r1 /CLONE=UI-R-AD0-vz-c-10-0-UI /FEA=EST /CNT=1 /TID=Rn.40414.1 /TIER=ConsEnd /STK=0 /UG=Rn.40414 /UG_TITLE=ESTs, Highly similar to ACTC_HUMAN ACTIN, ALPHA CARDIA (R.norvegicus) BF525047 actin, alpha, cardiac muscle 1 Actc1 29275 NM_019183 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006936 // muscle contraction // inferred from direct assay /// 0030048 // actin filament-based movement // inferred from electronic annotation /// 0030048 // actin filament-based movement // not recorded /// 0030240 // skeletal muscle thin filament assembly // inferred from electronic annotation /// 0030240 // skeletal muscle thin filament assembly // not recorded /// 0031032 // actomyosin structure organization // inferred from electronic annotation /// 0031032 // actomyosin structure organization // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0055003 // cardiac myofibril assembly // inferred from electronic annotation /// 0055003 // cardiac myofibril assembly // not recorded /// 0055008 // cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055008 // cardiac muscle tissue morphogenesis // not recorded /// 0060047 // heart contraction // not recorded /// 0060047 // heart contraction // inferred from electronic annotation /// 0060048 // cardiac muscle contraction // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // not recorded /// 0005884 // actin filament // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0030017 // sarcomere // not recorded /// 0030017 // sarcomere // inferred from electronic annotation /// 0031674 // I band // inferred from electronic annotation /// 0031674 // I band // not recorded /// 0042643 // actomyosin, actin part // inferred from electronic annotation /// 0042643 // actomyosin, actin part // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0017022 // myosin binding // inferred from electronic annotation /// 0017022 // myosin binding // not recorded 1385798_at AW533857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533857 /DB_XREF=gi:7176271 /DB_XREF=UI-R-BU0-anc-h-09-0-UI.s1 /CLONE=UI-R-BU0-anc-h-09-0-UI /FEA=EST /CNT=1 /TID=Rn.48191.1 /TIER=ConsEnd /STK=0 /UG=Rn.48191 /UG_TITLE=EST AW533857 1385799_at AW531533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531533 /DB_XREF=gi:7173947 /DB_XREF=UI-R-BT1-aku-a-12-0-UI.s1 /CLONE=UI-R-BT1-aku-a-12-0-UI /FEA=EST /CNT=1 /TID=Rn.47745.1 /TIER=ConsEnd /STK=0 /UG=Rn.47745 /UG_TITLE=ESTs AW531533 neurexophilin 1 Nxph1 25501 NM_012994 0005576 // extracellular region // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded 1385800_at AW531915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531915 /DB_XREF=gi:7174329 /DB_XREF=UI-R-BS0-amj-h-03-0-UI.s1 /CLONE=UI-R-BS0-amj-h-03-0-UI /FEA=EST /CNT=1 /TID=Rn.68075.1 /TIER=ConsEnd /STK=0 /UG=Rn.68075 /UG_TITLE=EST AW531915 1385801_at AI556034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556034 /DB_XREF=gi:4488397 /DB_XREF=UI-R-C2p-qz-h-10-0-UI.s1 /CLONE=UI-R-C2p-qz-h-10-0-UI /FEA=EST /CNT=1 /TID=Rn.38207.1 /TIER=ConsEnd /STK=0 /UG=Rn.38207 /UG_TITLE=EST, Weakly similar to DNAJ protein like (Caenorhabditis elegans) (C.elegans) AI556034 DnaJ (Hsp40) homolog, subfamily C, member 18 Dnajc18 291677 NM_001013887 0006457 // protein folding // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1385802_at BF418288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418288 /DB_XREF=gi:11406277 /DB_XREF=UI-R-CA0-bmd-b-12-0-UI.s1 /CLONE=UI-R-CA0-bmd-b-12-0-UI /FEA=EST /CNT=1 /TID=Rn.63393.1 /TIER=ConsEnd /STK=0 /UG=Rn.63393 /UG_TITLE=EST BF418288 1385803_at BM388555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388555 /DB_XREF=gi:18188608 /DB_XREF=UI-R-DZ0-ckm-i-08-0-UI.s1 /CLONE=UI-R-DZ0-ckm-i-08-0-UI /FEA=EST /CNT=1 /TID=Rn.12154.2 /TIER=ConsEnd /STK=0 /UG=Rn.12154 /UG_TITLE=ESTs, Highly similar to S44454 transcription factor BTF2 chain p44 (H.sapiens) BM388555 general transcription factor IIH, polypeptide 2 Gtf2h2 294693 NM_001077428 0000718 // nucleotide-excision repair, DNA damage removal // not recorded /// 0002031 // G-protein coupled receptor internalization // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005675 // holo TFIIH complex // not recorded /// 0005675 // holo TFIIH complex // inferred from sequence or structural similarity 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0008094 // DNA-dependent ATPase activity // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // not recorded /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1385804_x_at AA956841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956841 /DB_XREF=gi:4239315 /DB_XREF=UI-R-E1-fo-a-03-0-UI.s1 /CLONE=UI-R-E1-fo-a-03-0-UI /FEA=EST /CNT=1 /TID=Rn.24770.3 /TIER=ConsEnd /STK=0 /UG=Rn.24770 /UG_TITLE=ESTs, Weakly similar to T26935 hypothetical protein Y45F10D.8 - Caenorhabditis elegans (C.elegans) AA956841 similar to WD repeat domain 36 LOC688637 688637 XM_001067706 /// XM_002725323 0006364 // rRNA processing // inferred from electronic annotation 0032040 // small-subunit processome // inferred from electronic annotation 1385805_at AI071958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071958 /DB_XREF=gi:3398152 /DB_XREF=UI-R-C2-nl-d-02-0-UI.s1 /CLONE=UI-R-C2-nl-d-02-0-UI /FEA=EST /CNT=1 /TID=Rn.20680.2 /TIER=ConsEnd /STK=0 /UG=Rn.20680 /UG_TITLE=ESTs AI071958 1385806_at AA996771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996771 /DB_XREF=gi:4280535 /DB_XREF=UI-R-C0-hh-e-02-0-UI.s1 /CLONE=UI-R-C0-hh-e-02-0-UI /FEA=EST /CNT=1 /TID=Rn.12402.1 /TIER=ConsEnd /STK=0 /UG=Rn.12402 /UG_TITLE=EST AA996771 1385807_at BF560816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF560816 /DB_XREF=gi:11670546 /DB_XREF=UI-R-C0-gw-d-06-0-UI.r1 /CLONE=UI-R-C0-gw-d-06-0-UI /FEA=EST /CNT=1 /TID=Rn.22146.3 /TIER=ConsEnd /STK=0 /UG=Rn.22146 /UG_TITLE=ESTs, Weakly similar to Slit1 (Rattus norvegicus) (R.norvegicus) BF560816 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1385808_at BF546046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546046 /DB_XREF=gi:11637111 /DB_XREF=UI-R-C2p-re-d-02-0-UI.r1 /CLONE=UI-R-C2p-re-d-02-0-UI /FEA=EST /CNT=1 /TID=Rn.39283.2 /TIER=ConsEnd /STK=0 /UG=Rn.39283 /UG_TITLE=ESTs, Highly similar to T46480 hypothetical protein DKFZp434L1850.1 (H.sapiens) BF546046 PHD finger protein 7 Phf7 364510 NM_001012211 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385809_at AI070105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070105 /DB_XREF=gi:3396356 /DB_XREF=UI-R-Y0-ls-h-06-0-UI.s1 /CLONE=UI-R-Y0-ls-h-06-0-UI /FEA=EST /CNT=1 /TID=Rn.19656.1 /TIER=ConsEnd /STK=0 /UG=Rn.19656 /UG_TITLE=EST AI070105 FAST kinase domains 5 Fastkd5 366192 XR_085786 /// XR_086207 1385810_at BF546013 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546013 /DB_XREF=gi:11637168 /DB_XREF=UI-R-C2p-rq-d-09-0-UI.r1 /CLONE=UI-R-C2p-rq-d-09-0-UI /FEA=EST /CNT=1 /TID=Rn.34498.2 /TIER=ConsEnd /STK=0 /UG=Rn.34498 /UG_TITLE=ESTs, Weakly similar to C212_HUMAN 28.3 KD PROTEIN C21ORF2 (H.sapiens) BF546013 leucine rich transmembrane and 0-methyltransferase domain containing Lrtomt 293156 NM_001106284 0005737 // cytoplasm // inferred from electronic annotation 1385811_at BF555598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555598 /DB_XREF=gi:11665328 /DB_XREF=UI-R-E0-cz-c-04-0-UI.r1 /CLONE=UI-R-E0-cz-c-04-0-UI /FEA=EST /CNT=1 /TID=Rn.14920.2 /TIER=ConsEnd /STK=0 /UG=Rn.14920 /UG_TITLE=ESTs, Highly similar to S68141 nuclear protein HIRA - mouse (M.musculus) BF555598 HIR histone cell cycle regulation defective homolog A (S. cerevisiae) Hira 363849 NM_001135760 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007369 // gastrulation // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation 0000790 // nuclear chromatin // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1385812_at BE110833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110833 /DB_XREF=gi:8502938 /DB_XREF=UI-R-BJ1-aus-e-06-0-UI.s1 /CLONE=UI-R-BJ1-aus-e-06-0-UI /FEA=EST /CNT=1 /TID=Rn.69200.1 /TIER=ConsEnd /STK=0 /UG=Rn.69200 /UG_TITLE=EST BE110833 1385813_at AI069938 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI069938 /DB_XREF=gi:3396189 /DB_XREF=UI-R-C1-lo-e-04-0-UI.s1 /CLONE=UI-R-C1-lo-e-04-0-UI /FEA=EST /CNT=1 /TID=Rn.19595.1 /TIER=ConsEnd /STK=0 /UG=Rn.19595 /UG_TITLE=EST AI069938 similar to RIKEN cDNA 2010001M09 RGD1310251 291675 NM_001024240 0002642 // positive regulation of immunoglobulin biosynthetic process // not recorded /// 0002642 // positive regulation of immunoglobulin biosynthetic process // inferred from sequence or structural similarity /// 0002642 // positive regulation of immunoglobulin biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0034663 // endoplasmic reticulum chaperone complex // not recorded /// 0034663 // endoplasmic reticulum chaperone complex // inferred from sequence or structural similarity /// 0034663 // endoplasmic reticulum chaperone complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1385814_at H32486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H32486 /DB_XREF=gi:977903 /DB_XREF=EST107634 /CLONE=RPCBZ46 /FEA=EST /CNT=1 /TID=Rn.32659.2 /TIER=ConsEnd /STK=0 /UG=Rn.32659 /UG_TITLE=ESTs, Weakly similar to M3K1 RAT MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 1 (R.norvegicus) H32486 mitogen activated protein kinase kinase kinase 3 Map3k3 303604 NM_001107058 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0046777 // protein autophosphorylation // not recorded 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1385815_at AI072733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072733 /DB_XREF=gi:3398927 /DB_XREF=UI-R-Y0-ly-h-01-0-UI.s1 /CLONE=UI-R-Y0-ly-h-01-0-UI /FEA=EST /CNT=1 /TID=Rn.21808.1 /TIER=ConsEnd /STK=0 /UG=Rn.21808 /UG_TITLE=EST AI072733 SPEG complex locus Speg 363256 NM_001108802 /// NM_012905 0006468 // protein phosphorylation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042692 // muscle cell differentiation // inferred from expression pattern 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1385816_at BI293456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293456 /DB_XREF=gi:14954977 /DB_XREF=UI-R-DK0-cdq-g-06-0-UI.s1 /CLONE=UI-R-DK0-cdq-g-06-0-UI /FEA=EST /CNT=1 /TID=Rn.79439.1 /TIER=ConsEnd /STK=0 /UG=Rn.79439 /UG_TITLE=EST BI293456 family with sequence similarity 72, member A Fam72a 681249 NM_001081451 1385817_at BI288576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288576 /DB_XREF=gi:14945299 /DB_XREF=UI-R-DK0-cdg-e-03-0-UI.s1 /CLONE=UI-R-DK0-cdg-e-03-0-UI /FEA=EST /CNT=1 /TID=Rn.57768.2 /TIER=ConsEnd /STK=0 /UG=Rn.57768 /UG_TITLE=ESTs, Moderately similar to JC7122 serine (M.musculus) BI288576 NIMA (never in mitosis gene a)-related kinase 4 Nek4 306252 NM_001013134 0006468 // protein phosphorylation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1385818_at AA866435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866435 /DB_XREF=gi:4230655 /DB_XREF=UI-R-E0-ch-f-03-0-UI.s1 /CLONE=UI-R-E0-ch-f-03-0-UI /FEA=EST /CNT=1 /TID=Rn.3107.1 /TIER=ConsEnd /STK=0 /UG=Rn.3107 /UG_TITLE=EST AA866435 1385819_at BF287803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287803 /DB_XREF=gi:11218873 /DB_XREF=EST452394 /CLONE=RGIGK31 /FEA=EST /CNT=1 /TID=Rn.42767.3 /TIER=ConsEnd /STK=0 /UG=Rn.42767 /UG_TITLE=ESTs BF287803 misato homolog 1 (Drosophila) Msto1 295237 NM_001106443 0007005 // mitochondrion organization // not recorded /// 0048311 // mitochondrion distribution // not recorded /// 0051258 // protein polymerization // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005741 // mitochondrial outer membrane // not recorded /// 0043234 // protein complex // inferred from electronic annotation 1385820_at AW520508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520508 /DB_XREF=gi:7162886 /DB_XREF=UI-R-BJ0p-afx-c-08-0-UI.s1 /CLONE=UI-R-BJ0p-afx-c-08-0-UI /FEA=EST /CNT=1 /TID=Rn.45041.1 /TIER=ConsEnd /STK=0 /UG=Rn.45041 /UG_TITLE=EST AW520508 ubiquitin-conjugating enzyme E2 variant 1 Ube2v1 296390 NM_001110345 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1385821_at BF392004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392004 /DB_XREF=gi:11376861 /DB_XREF=UI-R-CA0-bfg-b-02-0-UI.s1 /CLONE=UI-R-CA0-bfg-b-02-0-UI /FEA=EST /CNT=1 /TID=Rn.57713.1 /TIER=ConsEnd /STK=0 /UG=Rn.57713 /UG_TITLE=EST BF392004 1385822_at AI030314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030314 /DB_XREF=gi:3248140 /DB_XREF=UI-R-C0-jb-h-03-0-UI.s1 /CLONE=UI-R-C0-jb-h-03-0-UI /FEA=EST /CNT=1 /TID=Rn.18459.1 /TIER=ConsEnd /STK=0 /UG=Rn.18459 /UG_TITLE=EST AI030314 1385823_s_at AI172520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172520 /DB_XREF=gi:3712560 /DB_XREF=UI-R-C2p-nu-e-02-0-UI.s1 /CLONE=UI-R-C2p-nu-e-02-0-UI /FEA=EST /CNT=1 /TID=Rn.48853.2 /TIER=ConsEnd /STK=0 /UG=Rn.48853 /UG_TITLE=ESTs AI172520 podocalyxin-like Podxl 192181 NM_138848 0007155 // cell adhesion // inferred from electronic annotation /// 0007162 // negative regulation of cell adhesion // inferred from direct assay /// 0030335 // positive regulation of cell migration // not recorded /// 0030335 // positive regulation of cell migration // inferred from sequence or structural similarity /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0032534 // regulation of microvillus assembly // not recorded /// 0032534 // regulation of microvillus assembly // inferred from sequence or structural similarity /// 0032534 // regulation of microvillus assembly // inferred from electronic annotation /// 0033634 // positive regulation of cell-cell adhesion mediated by integrin // not recorded /// 0033634 // positive regulation of cell-cell adhesion mediated by integrin // inferred from sequence or structural similarity /// 0033634 // positive regulation of cell-cell adhesion mediated by integrin // inferred from electronic annotation /// 0050900 // leukocyte migration // inferred from electronic annotation /// 0050900 // leukocyte migration // not recorded /// 0072175 // epithelial tube formation // inferred from sequence or structural similarity 0001726 // ruffle // not recorded /// 0001726 // ruffle // inferred from sequence or structural similarity /// 0001726 // ruffle // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005902 // microvillus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030175 // filopodium // not recorded /// 0030175 // filopodium // inferred from sequence or structural similarity /// 0030175 // filopodium // inferred from electronic annotation /// 0031528 // microvillus membrane // not recorded /// 0031528 // microvillus membrane // inferred from sequence or structural similarity /// 0031528 // microvillus membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 1385824_at BF388819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388819 /DB_XREF=gi:11373643 /DB_XREF=UI-R-BS2-bde-h-06-0-UI.s1 /CLONE=UI-R-BS2-bde-h-06-0-UI /FEA=EST /CNT=1 /TID=Rn.56823.2 /TIER=ConsEnd /STK=0 /UG=Rn.56823 /UG_TITLE=ESTs, Highly similar to T00263 hypothetical protein KIAA0480 (H.sapiens) BF388819 centrosomal protein 350kDa Cep350 246304 XM_001067472 /// XM_341136 1385825_at AW920445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920445 /DB_XREF=gi:8086256 /DB_XREF=EST351749 /CLONE=RGIGW20 /FEA=EST /CNT=1 /TID=Rn.55638.1 /TIER=ConsEnd /STK=0 /UG=Rn.55638 /UG_TITLE=ESTs AW920445 SECIS binding protein 2-like Secisbp2l 296115 NM_001168527 1385826_at AA860047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA860047 /DB_XREF=gi:4230608 /DB_XREF=UI-R-E0-bz-g-03-0-UI.s2 /CLONE=UI-R-E0-bz-g-03-0-UI /FEA=EST /CNT=1 /TID=Rn.895.1 /TIER=ConsEnd /STK=0 /UG=Rn.895 /UG_TITLE=EST AA860047 1385827_at AI575844 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575844 /DB_XREF=gi:4560220 /DB_XREF=UI-R-Y0-uy-f-04-0-UI.s1 /CLONE=UI-R-Y0-uy-f-04-0-UI /FEA=EST /CNT=1 /TID=Rn.38885.1 /TIER=ConsEnd /STK=0 /UG=Rn.38885 /UG_TITLE=EST AI575844 cardiotrophin-like cytokine factor 1 Clcf1 365395 NM_207615 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007259 // JAK-STAT cascade // not recorded /// 0007259 // JAK-STAT cascade // inferred from electronic annotation /// 0030183 // B cell differentiation // not recorded /// 0030183 // B cell differentiation // inferred from electronic annotation 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // inferred from sequence or structural similarity /// 0005125 // cytokine activity // not recorded /// 0005125 // cytokine activity // inferred from electronic annotation 1385828_at BF559433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559433 /DB_XREF=gi:11669121 /DB_XREF=UI-R-C1-lr-a-09-0-UI.r1 /CLONE=UI-R-C1-lr-a-09-0-UI /FEA=EST /CNT=1 /TID=Rn.19229.2 /TIER=ConsEnd /STK=0 /UG=Rn.19229 /UG_TITLE=ESTs BF559433 1385829_at BI294746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294746 /DB_XREF=gi:14957500 /DB_XREF=UI-R-DK0-ceb-f-04-0-UI.s1 /CLONE=UI-R-DK0-ceb-f-04-0-UI /FEA=EST /CNT=1 /TID=Rn.43633.2 /TIER=ConsEnd /STK=0 /UG=Rn.43633 /UG_TITLE=ESTs, Weakly similar to myosin-binding C-protein (R.norvegicus) BI294746 obscurin-like 1 Obsl1 363259 XM_001062053 /// XM_343599 0055003 // cardiac myofibril assembly // not recorded 1385830_at BE110287 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110287 /DB_XREF=gi:8502392 /DB_XREF=UI-R-CA0-axl-c-01-0-UI.s1 /CLONE=UI-R-CA0-axl-c-01-0-UI /FEA=EST /CNT=1 /TID=Rn.47098.3 /TIER=ConsEnd /STK=0 /UG=Rn.47098 /UG_TITLE=ESTs BE110287 similar to hypothetical protein FLJ31606 RGD1561507 292078 NM_001106195 1385831_at AA924459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924459 /DB_XREF=gi:4235650 /DB_XREF=UI-R-A1-dx-e-11-0-UI.s1 /CLONE=UI-R-A1-dx-e-11-0-UI /FEA=EST /CNT=1 /TID=Rn.15328.3 /TIER=ConsEnd /STK=0 /UG=Rn.15328 /UG_TITLE=ESTs, Weakly similar to SSN1_MOUSE SAM-DOMAIN PROTEIN SAMSN-1 (M.musculus) AA924459 SAM and SH3 domain containing 3 Sash3 317578 NM_001134992 0002639 // positive regulation of immunoglobulin production // inferred from electronic annotation /// 0002639 // positive regulation of immunoglobulin production // not recorded /// 0002726 // positive regulation of T cell cytokine production // inferred from electronic annotation /// 0002726 // positive regulation of T cell cytokine production // not recorded /// 0002821 // positive regulation of adaptive immune response // inferred from electronic annotation /// 0002821 // positive regulation of adaptive immune response // not recorded /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // not recorded /// 0032729 // positive regulation of interferon-gamma production // inferred from electronic annotation /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0032733 // positive regulation of interleukin-10 production // inferred from electronic annotation /// 0032733 // positive regulation of interleukin-10 production // not recorded /// 0032743 // positive regulation of interleukin-2 production // inferred from electronic annotation /// 0032743 // positive regulation of interleukin-2 production // not recorded /// 0032753 // positive regulation of interleukin-4 production // inferred from electronic annotation /// 0032753 // positive regulation of interleukin-4 production // not recorded /// 0032760 // positive regulation of tumor necrosis factor production // inferred from electronic annotation /// 0032760 // positive regulation of tumor necrosis factor production // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0043372 // positive regulation of CD4-positive, alpha beta T cell differentiation // inferred from electronic annotation /// 0043372 // positive regulation of CD4-positive, alpha beta T cell differentiation // not recorded /// 0046622 // positive regulation of organ growth // inferred from electronic annotation /// 0046622 // positive regulation of organ growth // not recorded /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // not recorded /// 0051251 // positive regulation of lymphocyte activation // inferred from electronic annotation /// 0051251 // positive regulation of lymphocyte activation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1385832_s_at AA924459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924459 /DB_XREF=gi:4235650 /DB_XREF=UI-R-A1-dx-e-11-0-UI.s1 /CLONE=UI-R-A1-dx-e-11-0-UI /FEA=EST /CNT=1 /TID=Rn.15328.3 /TIER=ConsEnd /STK=0 /UG=Rn.15328 /UG_TITLE=ESTs, Weakly similar to SSN1_MOUSE SAM-DOMAIN PROTEIN SAMSN-1 (M.musculus) AA924459 SAM and SH3 domain containing 3 Sash3 317578 NM_001134992 0002639 // positive regulation of immunoglobulin production // inferred from electronic annotation /// 0002639 // positive regulation of immunoglobulin production // not recorded /// 0002726 // positive regulation of T cell cytokine production // inferred from electronic annotation /// 0002726 // positive regulation of T cell cytokine production // not recorded /// 0002821 // positive regulation of adaptive immune response // inferred from electronic annotation /// 0002821 // positive regulation of adaptive immune response // not recorded /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // not recorded /// 0032729 // positive regulation of interferon-gamma production // inferred from electronic annotation /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0032733 // positive regulation of interleukin-10 production // inferred from electronic annotation /// 0032733 // positive regulation of interleukin-10 production // not recorded /// 0032743 // positive regulation of interleukin-2 production // inferred from electronic annotation /// 0032743 // positive regulation of interleukin-2 production // not recorded /// 0032753 // positive regulation of interleukin-4 production // inferred from electronic annotation /// 0032753 // positive regulation of interleukin-4 production // not recorded /// 0032760 // positive regulation of tumor necrosis factor production // inferred from electronic annotation /// 0032760 // positive regulation of tumor necrosis factor production // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0043372 // positive regulation of CD4-positive, alpha beta T cell differentiation // inferred from electronic annotation /// 0043372 // positive regulation of CD4-positive, alpha beta T cell differentiation // not recorded /// 0046622 // positive regulation of organ growth // inferred from electronic annotation /// 0046622 // positive regulation of organ growth // not recorded /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // not recorded /// 0051251 // positive regulation of lymphocyte activation // inferred from electronic annotation /// 0051251 // positive regulation of lymphocyte activation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1385834_at AW532906 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532906 /DB_XREF=gi:7175320 /DB_XREF=UI-R-BU0-ang-e-08-0-UI.s1 /CLONE=UI-R-BU0-ang-e-08-0-UI /FEA=EST /CNT=1 /TID=Rn.68119.1 /TIER=ConsEnd /STK=0 /UG=Rn.68119 /UG_TITLE=EST AW532906 WNK lysine deficient protein kinase 4 Wnk4 287715 NM_175579 0006350 // transcription // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // not recorded /// 0006811 // ion transport // inferred from sequence or structural similarity /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from electronic annotation /// 0006821 // chloride transport // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from sequence or structural similarity /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0050794 // regulation of cellular process // not recorded /// 0050794 // regulation of cellular process // inferred from sequence or structural similarity /// 0050794 // regulation of cellular process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005923 // tight junction // not recorded /// 0005923 // tight junction // inferred from sequence or structural similarity /// 0005923 // tight junction // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1385835_at AI030641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030641 /DB_XREF=gi:3248467 /DB_XREF=UI-R-C0-jd-a-08-0-UI.s1 /CLONE=UI-R-C0-jd-a-08-0-UI /FEA=EST /CNT=1 /TID=Rn.18549.1 /TIER=ConsEnd /STK=0 /UG=Rn.18549 /UG_TITLE=EST AI030641 plexin domain containing 1 Plxdc1 303505 NM_001107046 0021510 // spinal cord development // inferred from expression pattern 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 1385836_at AI454586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454586 /DB_XREF=gi:4294763 /DB_XREF=UI-R-BT0-pw-h-09-0-UI.s1 /CLONE=UI-R-BT0-pw-h-09-0-UI /FEA=EST /CNT=1 /TID=Rn.35063.1 /TIER=ConsEnd /STK=0 /UG=Rn.35063 /UG_TITLE=EST AI454586 1385837_at AA956624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956624 /DB_XREF=gi:4239098 /DB_XREF=UI-R-E1-fn-e-04-0-UI.s1 /CLONE=UI-R-E1-fn-e-04-0-UI /FEA=EST /CNT=1 /TID=Rn.9043.1 /TIER=ConsEnd /STK=0 /UG=Rn.9043 /UG_TITLE=EST AA956624 Homeo box D3 Hoxd3 288152 XM_001064213 /// XM_213633 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0007219 // Notch signaling pathway // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0010628 // positive regulation of gene expression // not recorded /// 0021615 // glossopharyngeal nerve morphogenesis // not recorded /// 0030878 // thyroid gland development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0051216 // cartilage development // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1385838_a_at BF287928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287928 /DB_XREF=gi:11218998 /DB_XREF=EST452519 /CLONE=RGIGM25 /FEA=EST /CNT=1 /TID=Rn.18949.2 /TIER=ConsEnd /STK=0 /UG=Rn.18949 /UG_TITLE=ESTs, Weakly similar to T28787 hypothetical protein C41D11.5 - Caenorhabditis elegans (C.elegans) BF287928 TM2 domain containing 1 Tm2d1 362545 NM_001108670 0007165 // signal transduction // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded 0005887 // integral to plasma membrane // not recorded 0001540 // beta-amyloid binding // not recorded /// 0004930 // G-protein coupled receptor activity // not recorded 1385839_x_at BF287928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287928 /DB_XREF=gi:11218998 /DB_XREF=EST452519 /CLONE=RGIGM25 /FEA=EST /CNT=1 /TID=Rn.18949.2 /TIER=ConsEnd /STK=0 /UG=Rn.18949 /UG_TITLE=ESTs, Weakly similar to T28787 hypothetical protein C41D11.5 - Caenorhabditis elegans (C.elegans) BF287928 TM2 domain containing 1 Tm2d1 362545 NM_001108670 0007165 // signal transduction // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded 0005887 // integral to plasma membrane // not recorded 0001540 // beta-amyloid binding // not recorded /// 0004930 // G-protein coupled receptor activity // not recorded 1385840_at BM383614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383614 /DB_XREF=gi:18183667 /DB_XREF=UI-R-DM1-cka-d-02-0-UI.s1 /CLONE=UI-R-DM1-cka-d-02-0-UI /FEA=EST /CNT=1 /TID=Rn.81340.1 /TIER=ConsEnd /STK=0 /UG=Rn.81340 /UG_TITLE=EST BM383614 zona pellucida binding protein Zpbp 498415 NM_001025139 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 1385841_at BM383983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383983 /DB_XREF=gi:18184036 /DB_XREF=UI-R-DM1-ckc-o-09-0-UI.s1 /CLONE=UI-R-DM1-ckc-o-09-0-UI /FEA=EST /CNT=1 /TID=Rn.81381.1 /TIER=ConsEnd /STK=0 /UG=Rn.81381 /UG_TITLE=EST BM383983 1385842_at BM386666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386666 /DB_XREF=gi:18186719 /DB_XREF=UI-R-CN1-cjg-l-09-0-UI.s1 /CLONE=UI-R-CN1-cjg-l-09-0-UI /FEA=EST /CNT=1 /TID=Rn.81828.1 /TIER=ConsEnd /STK=0 /UG=Rn.81828 /UG_TITLE=EST BM386666 interleukin 1 family, member 8 Il1f8 362076 NM_001108570 0005615 // extracellular space // inferred from electronic annotation 0005152 // interleukin-1 receptor antagonist activity // inferred from electronic annotation 1385843_at BM386971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386971 /DB_XREF=gi:18187024 /DB_XREF=UI-R-CN1-cji-e-21-0-UI.s1 /CLONE=UI-R-CN1-cji-e-21-0-UI /FEA=EST /CNT=1 /TID=Rn.81898.1 /TIER=ConsEnd /STK=0 /UG=Rn.81898 /UG_TITLE=EST BM386971 1385844_at BM390767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390767 /DB_XREF=gi:18190820 /DB_XREF=UI-R-CN1-cjr-n-11-0-UI.s1 /CLONE=UI-R-CN1-cjr-n-11-0-UI /FEA=EST /CNT=1 /TID=Rn.82529.1 /TIER=ConsEnd /STK=0 /UG=Rn.82529 /UG_TITLE=EST BM390767 1385845_at BM391000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391000 /DB_XREF=gi:18191053 /DB_XREF=UI-R-CN1-cjm-k-03-0-UI.s1 /CLONE=UI-R-CN1-cjm-k-03-0-UI /FEA=EST /CNT=1 /TID=Rn.82580.1 /TIER=ConsEnd /STK=0 /UG=Rn.82580 /UG_TITLE=EST BM391000 similar to divalent cation tolerant protein CUTA RGD1564854 502617 NM_001109341 0010038 // response to metal ion // inferred from electronic annotation 1385848_s_at AI112175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112175 /DB_XREF=gi:3512124 /DB_XREF=UI-R-Y0-ml-e-10-0-UI.s1 /CLONE=UI-R-Y0-ml-e-10-0-UI /FEA=EST /CNT=1 /TID=Rn.22241.3 /TIER=ConsEnd /STK=0 /UG=Rn.22241 /UG_TITLE=ESTs AI112175 tudor domain containing 7 Tdrd7 85425 NM_138871 0007281 // germ cell development // inferred from electronic annotation /// 0007281 // germ cell development // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0033391 // chromatoid body // inferred from electronic annotation /// 0033391 // chromatoid body // not recorded /// 0043186 // P granule // inferred from electronic annotation /// 0043186 // P granule // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from direct assay 1385849_at AI146262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146262 /DB_XREF=gi:3668061 /DB_XREF=UI-R-BT0-qh-h-11-0-UI.s1 /CLONE=UI-R-BT0-qh-h-11-0-UI /FEA=EST /CNT=1 /TID=Rn.28788.1 /TIER=ConsEnd /STK=0 /UG=Rn.28788 /UG_TITLE=EST AI146262 1385850_at BE096970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096970 /DB_XREF=gi:8487901 /DB_XREF=UI-R-BT1-amf-f-11-0-UI.s1 /CLONE=UI-R-BT1-amf-f-11-0-UI /FEA=EST /CNT=1 /TID=Rn.68336.1 /TIER=ConsEnd /STK=0 /UG=Rn.68336 /UG_TITLE=EST BE096970 1385851_at AA925441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925441 /DB_XREF=gi:4236632 /DB_XREF=UI-R-A1-ec-c-11-0-UI.s1 /CLONE=UI-R-A1-ec-c-11-0-UI /FEA=EST /CNT=1 /TID=Rn.15526.2 /TIER=ConsEnd /STK=0 /UG=Rn.15526 /UG_TITLE=ESTs AA925441 1385852_at BF566908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF566908 /DB_XREF=gi:11676638 /DB_XREF=UI-R-BJ0p-afu-c-03-0-UI.r1 /CLONE=UI-R-BJ0p-afu-c-03-0-UI /FEA=EST /CNT=1 /TID=Rn.54163.2 /TIER=ConsEnd /STK=0 /UG=Rn.54163 /UG_TITLE=ESTs, Highly similar to 1923401A protein CBP (M.musculus) BF566908 CREB binding protein Crebbp 54244 NM_133381 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from direct assay /// 0016573 // histone acetylation // inferred from direct assay /// 0016573 // histone acetylation // not recorded /// 0016573 // histone acetylation // inferred from electronic annotation /// 0016573 // histone acetylation // inferred from sequence or structural similarity /// 0018076 // N-terminal peptidyl-lysine acetylation // not recorded /// 0018076 // N-terminal peptidyl-lysine acetylation // inferred from electronic annotation /// 0030718 // germ-line stem cell maintenance // not recorded /// 0030718 // germ-line stem cell maintenance // inferred from electronic annotation /// 0033261 // regulation of S phase // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from direct assay /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0000123 // histone acetyltransferase complex // not recorded /// 0000123 // histone acetyltransferase complex // inferred from electronic annotation /// 0000940 // condensed chromosome outer kinetochore // not recorded /// 0000940 // condensed chromosome outer kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred by curator /// 0005667 // transcription factor complex // inferred from direct assay /// 0005667 // transcription factor complex // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0016604 // nuclear body // not recorded /// 0016604 // nuclear body // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0002039 // p53 binding // not recorded /// 0002039 // p53 binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003712 // transcription cofactor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0003713 // transcription coactivator activity // traceable author statement /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from direct assay /// 0004402 // histone acetyltransferase activity // not recorded /// 0004402 // histone acetyltransferase activity // traceable author statement /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016407 // acetyltransferase activity // not recorded /// 0016407 // acetyltransferase activity // inferred from electronic annotation /// 0016407 // acetyltransferase activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0042975 // peroxisome proliferator activated receptor binding // inferred from direct assay /// 0046332 // SMAD binding // inferred from physical interaction /// 0051577 // MyoD binding // not recorded /// 0051577 // MyoD binding // inferred from electronic annotation /// 0051577 // MyoD binding // inferred from sequence or structural similarity 1385853_at BF560180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF560180 /DB_XREF=gi:11669910 /DB_XREF=UI-R-E1-fg-f-07-0-UI.r1 /CLONE=UI-R-E1-fg-f-07-0-UI /FEA=EST /CNT=1 /TID=Rn.31119.2 /TIER=ConsEnd /STK=0 /UG=Rn.31119 /UG_TITLE=ESTs, Weakly similar to T45039 hypothetical protein Y39B6B.m (imported) - Caenorhabditis elegans (C.elegans) BF560180 bromodomain adjacent to zinc finger domain, 1A Baz1a 314126 NM_001170568 /// XM_001079067 /// XM_234156 0000228 // nuclear chromosome // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1385854_at AI029994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029994 /DB_XREF=gi:3247820 /DB_XREF=UI-R-C0-jr-g-09-0-UI.s1 /CLONE=UI-R-C0-jr-g-09-0-UI /FEA=EST /CNT=1 /TID=Rn.54392.1 /TIER=ConsEnd /STK=0 /UG=Rn.54392 /LL=57033 /UG_GENE=Adam22 /UG_TITLE=a disintegrin and metalloprotease domain (ADAM) 22 AI029994 a disintegrin and metalloprotease domain (ADAM) 22 Adam22 57033 XM_002726324 /// XM_002729276 0006508 // proteolysis // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1385855_at AA859673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859673 /DB_XREF=gi:4230217 /DB_XREF=UI-R-E0-bs-d-05-0-UI.s1 /CLONE=UI-R-E0-bs-d-05-0-UI /FEA=EST /CNT=1 /TID=Rn.46.1 /TIER=ConsEnd /STK=0 /UG=Rn.46 /UG_TITLE=EST AA859673 1385856_at BE096718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096718 /DB_XREF=gi:8487649 /DB_XREF=UI-R-BU0-apl-g-01-0-UI.s1 /CLONE=UI-R-BU0-apl-g-01-0-UI /FEA=EST /CNT=1 /TID=Rn.49467.1 /TIER=ConsEnd /STK=0 /UG=Rn.49467 /UG_TITLE=EST BE096718 RIO kinase 1 (yeast) Riok1 291061 NM_001100511 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1385857_at AA998661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998661 /DB_XREF=gi:4291397 /DB_XREF=UI-R-C0-ig-d-05-0-UI.s1 /CLONE=UI-R-C0-ig-d-05-0-UI /FEA=EST /CNT=1 /TID=Rn.73624.1 /TIER=ConsEnd /STK=0 /UG=Rn.73624 /UG_TITLE=EST AA998661 oligophrenin 1 Ophn1 312108 NM_001107848 0006897 // endocytosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0046847 // filopodium assembly // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0008093 // cytoskeletal adaptor activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction 1385858_at AI071537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071537 /DB_XREF=gi:3397752 /DB_XREF=UI-R-C1-ky-b-11-0-UI.s2 /CLONE=UI-R-C1-ky-b-11-0-UI /FEA=EST /CNT=1 /TID=Rn.20557.1 /TIER=ConsEnd /STK=0 /UG=Rn.20557 /UG_TITLE=EST AI071537 1385859_at AI059371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059371 /DB_XREF=gi:3333148 /DB_XREF=UI-R-C1-ld-f-09-0-UI.s1 /CLONE=UI-R-C1-ld-f-09-0-UI /FEA=EST /CNT=1 /TID=Rn.39317.2 /TIER=ConsEnd /STK=0 /UG=Rn.39317 /UG_TITLE=ESTs AI059371 1385860_at BF543907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543907 /DB_XREF=gi:11635014 /DB_XREF=UI-R-Y0-aby-a-06-0-UI.r1 /CLONE=UI-R-Y0-aby-a-06-0-UI /FEA=EST /CNT=1 /TID=Rn.44954.2 /TIER=ConsEnd /STK=0 /UG=Rn.44954 /UG_TITLE=ESTs, Weakly similar to I78376 ryanodine receptor - mouse (M.musculus) BF543907 ring finger and SPRY domain containing 1 Rspry1 689249 NM_001100945 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385861_x_at AW522259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522259 /DB_XREF=gi:7164644 /DB_XREF=UI-R-BO0-agy-d-10-0-UI.s1 /CLONE=UI-R-BO0-agy-d-10-0-UI /FEA=EST /CNT=1 /TID=Rn.45340.1 /TIER=ConsEnd /STK=0 /UG=Rn.45340 /UG_TITLE=EST AW522259 1385862_at BF552350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552350 /DB_XREF=gi:11662128 /DB_XREF=UI-R-C2p-nz-f-11-0-UI.r1 /CLONE=UI-R-C2p-nz-f-11-0-UI /FEA=EST /CNT=1 /TID=Rn.63964.2 /TIER=ConsEnd /STK=0 /UG=Rn.63964 /UG_TITLE=ESTs BF552350 armadillo repeat containing 9 Armc9 301579 NM_001109663 0005488 // binding // inferred from electronic annotation 1385864_at BF542299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542299 /DB_XREF=gi:11633406 /DB_XREF=UI-R-C2-nn-f-07-0-UI.r1 /CLONE=UI-R-C2-nn-f-07-0-UI /FEA=EST /CNT=1 /TID=Rn.20201.2 /TIER=ConsEnd /STK=0 /UG=Rn.20201 /UG_TITLE=ESTs BF542299 exportin 4 Xpo4 290280 NM_001106042 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1385865_at BM390351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390351 /DB_XREF=gi:18190404 /DB_XREF=UI-R-CN1-cjq-o-22-0-UI.s1 /CLONE=UI-R-CN1-cjq-o-22-0-UI /FEA=EST /CNT=1 /TID=Rn.24652.2 /TIER=ConsEnd /STK=0 /UG=Rn.24652 /UG_TITLE=ESTs, Moderately similar to T17331 hypothetical protein DKFZp434C245.1 (H.sapiens) BM390351 WD repeat domain 51A Wdr51a 501048 NM_001109296 1385866_at AA901198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901198 /DB_XREF=gi:4233699 /DB_XREF=UI-R-A1-dp-e-01-0-UI.s1 /CLONE=UI-R-A1-dp-e-01-0-UI /FEA=EST /CNT=1 /TID=Rn.9397.2 /TIER=ConsEnd /STK=0 /UG=Rn.9397 /UG_TITLE=ESTs, Moderately similar to RNP RAT RIBONUCLEASE PANCREATIC PRECURSOR (R.norvegicus) AA901198 1385867_x_at BG373936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373936 /DB_XREF=gi:13298408 /DB_XREF=UI-R-CV1-bsi-e-12-0-UI.s1 /CLONE=UI-R-CV1-bsi-e-12-0-UI /FEA=EST /CNT=1 /TID=Rn.66172.1 /TIER=ConsEnd /STK=0 /UG=Rn.66172 /UG_TITLE=EST BG373936 1385868_at AA875124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875124 /DB_XREF=gi:4231005 /DB_XREF=UI-R-E0-bu-c-06-0-UI.s2 /CLONE=UI-R-E0-bu-c-06-0-UI /FEA=EST /CNT=1 /TID=Rn.2798.1 /TIER=ConsEnd /STK=0 /UG=Rn.2798 /UG_TITLE=EST AA875124 1385869_at AI408878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408878 /DB_XREF=gi:4252382 /DB_XREF=EST237169 /CLONE=ROVER19 /FEA=EST /CNT=6 /TID=Rn.22691.1 /TIER=ConsEnd /STK=3 /UG=Rn.22691 /UG_TITLE=ESTs AI408878 1385870_at AA997980 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997980 /DB_XREF=gi:4286675 /DB_XREF=UI-R-C0-hu-d-03-0-UI.s1 /CLONE=UI-R-C0-hu-d-03-0-UI /FEA=EST /CNT=6 /TID=Rn.22691.1 /TIER=ConsEnd /STK=0 /UG=Rn.22691 /UG_TITLE=ESTs AA997980 1385871_at AA859982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859982 /DB_XREF=gi:4230517 /DB_XREF=UI-R-E0-ca-h-10-0-UI.s1 /CLONE=UI-R-E0-ca-h-10-0-UI /FEA=EST /CNT=5 /TID=Rn.18656.1 /TIER=ConsEnd /STK=3 /UG=Rn.18656 /UG_TITLE=ESTs AA859982 DEAH (Asp-Glu-Ala-His) box polypeptide 36 Dhx36 310461 NM_001107678 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1385872_at AI237532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237532 /DB_XREF=gi:3831038 /DB_XREF=EST234094 /CLONE=RPLDA27 /FEA=EST /CNT=5 /TID=Rn.18656.1 /TIER=ConsEnd /STK=0 /UG=Rn.18656 /UG_TITLE=ESTs AI237532 DEAH (Asp-Glu-Ala-His) box polypeptide 36 Dhx36 310461 NM_001107678 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1385873_at BM388405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388405 /DB_XREF=gi:18188458 /DB_XREF=UI-R-CN1-cjn-k-03-0-UI.s1 /CLONE=UI-R-CN1-cjn-k-03-0-UI /FEA=EST /CNT=8 /TID=Rn.25011.1 /TIER=ConsEnd /STK=2 /UG=Rn.25011 /UG_TITLE=ESTs BM388405 ubiquitin specific peptidase 42 Usp42 288482 NM_001105909 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1385874_at AA956418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956418 /DB_XREF=gi:4238892 /DB_XREF=UI-R-E1-fj-f-06-0-UI.s1 /CLONE=UI-R-E1-fj-f-06-0-UI /FEA=EST /CNT=8 /TID=Rn.25011.1 /TIER=ConsEnd /STK=0 /UG=Rn.25011 /UG_TITLE=ESTs AA956418 Ubiquitin specific peptidase 42 Usp42 288482 NM_001105909 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1385875_at AA957617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957617 /DB_XREF=gi:4277507 /DB_XREF=UI-R-E1-gb-d-02-0-UI.s1 /CLONE=UI-R-E1-gb-d-02-0-UI /FEA=EST /CNT=6 /TID=Rn.23881.1 /TIER=ConsEnd /STK=2 /UG=Rn.23881 /UG_TITLE=ESTs AA957617 1385876_at AA817826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817826 /DB_XREF=gi:4198352 /DB_XREF=UI-R-A0-ae-d-12-0-UI.s1 /CLONE=UI-R-A0-ae-d-12-0-UI /FEA=EST /CNT=6 /TID=Rn.23881.1 /TIER=ConsEnd /STK=2 /UG=Rn.23881 /UG_TITLE=ESTs AA817826 similar to Glypican-6 precursor LOC691984 691984 XM_001077762 /// XM_002725130 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0043395 // heparan sulfate proteoglycan binding // inferred from electronic annotation 1385877_at BI294012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294012 /DB_XREF=gi:14956050 /DB_XREF=UI-R-DK0-cdy-b-11-0-UI.s1 /CLONE=UI-R-DK0-cdy-b-11-0-UI /FEA=EST /CNT=6 /TID=Rn.16147.1 /TIER=ConsEnd /STK=2 /UG=Rn.16147 /UG_TITLE=ESTs BI294012 1385879_at AA893004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893004 /DB_XREF=gi:3019883 /DB_XREF=EST196807 /CLONE=RKIBB01 /FEA=EST /CNT=6 /TID=Rn.13465.1 /TIER=ConsEnd /STK=2 /UG=Rn.13465 /UG_TITLE=ESTs AA893004 1385881_at BE100612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100612 /DB_XREF=gi:8492508 /DB_XREF=UI-R-BJ1-auk-d-09-0-UI.s1 /CLONE=UI-R-BJ1-auk-d-09-0-UI /FEA=EST /CNT=6 /TID=Rn.27478.1 /TIER=ConsEnd /STK=2 /UG=Rn.27478 /UG_TITLE=ESTs BE100612 GATS protein-like 2 Gatsl2 304410 NM_001100561 1385883_at AI144842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144842 /DB_XREF=gi:3666641 /DB_XREF=UI-R-BT0-pm-e-05-0-UI.s1 /CLONE=UI-R-BT0-pm-e-05-0-UI /FEA=EST /CNT=5 /TID=Rn.27701.1 /TIER=ConsEnd /STK=2 /UG=Rn.27701 /UG_TITLE=ESTs AI144842 zinc finger and BTB domain containing 11 Zbtb11 304010 NM_001107097 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385885_at AW528491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528491 /DB_XREF=gi:7170905 /DB_XREF=UI-R-BT1-ako-a-04-0-UI.s1 /CLONE=UI-R-BT1-ako-a-04-0-UI /FEA=EST /CNT=5 /TID=Rn.44849.1 /TIER=ConsEnd /STK=2 /UG=Rn.44849 /UG_TITLE=ESTs, Weakly similar to T15848 hypothetical protein C56C10.3 - Caenorhabditis elegans (C.elegans) AW528491 1385887_at BE107316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107316 /DB_XREF=gi:8499421 /DB_XREF=UI-R-BS1-ays-d-03-0-UI.s1 /CLONE=UI-R-BS1-ays-d-03-0-UI /FEA=EST /CNT=5 /TID=Rn.40553.1 /TIER=ConsEnd /STK=2 /UG=Rn.40553 /UG_TITLE=ESTs BE107316 1385888_at AA963272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963272 /DB_XREF=gi:4278196 /DB_XREF=UI-R-E1-gh-g-07-0-UI.s1 /CLONE=UI-R-E1-gh-g-07-0-UI /FEA=EST /CNT=5 /TID=Rn.40553.1 /TIER=ConsEnd /STK=1 /UG=Rn.40553 /UG_TITLE=ESTs AA963272 1385889_at AA893212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893212 /DB_XREF=gi:3020091 /DB_XREF=EST197015 /CLONE=RKIBD58 /FEA=EST /CNT=6 /TID=Rn.23943.3 /TIER=ConsEnd /STK=2 /UG=Rn.23943 /UG_TITLE=ESTs AA893212 Similar to hypothetical protein MGC52110 RGD1565095 503252 NM_001195488 /// XM_001057297 /// XM_578786 0005739 // mitochondrion // not recorded 1385891_at AI101553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101553 /DB_XREF=gi:3706437 /DB_XREF=EST210842 /CLONE=RBRBS20 /FEA=EST /CNT=5 /TID=Rn.25084.1 /TIER=ConsEnd /STK=2 /UG=Rn.25084 /UG_TITLE=ESTs AI101553 1385892_at AA900322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900322 /DB_XREF=gi:4232812 /DB_XREF=UI-R-E0-dd-d-12-0-UI.s1 /CLONE=UI-R-E0-dd-d-12-0-UI /FEA=EST /CNT=5 /TID=Rn.25084.1 /TIER=ConsEnd /STK=2 /UG=Rn.25084 /UG_TITLE=ESTs AA900322 1385893_at AA874903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA874903 /DB_XREF=gi:4230785 /DB_XREF=UI-R-E0-ck-e-12-0-UI.s1 /CLONE=UI-R-E0-ck-e-12-0-UI /FEA=EST /CNT=4 /TID=Rn.32193.1 /TIER=ConsEnd /STK=2 /UG=Rn.32193 /UG_TITLE=ESTs AA874903 1385895_at AA859889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859889 /DB_XREF=gi:4230426 /DB_XREF=UI-R-E0-cc-d-04-0-UI.s1 /CLONE=UI-R-E0-cc-d-04-0-UI /FEA=EST /CNT=4 /TID=Rn.43075.1 /TIER=ConsEnd /STK=2 /UG=Rn.43075 /UG_TITLE=ESTs AA859889 1385897_at AI575697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575697 /DB_XREF=gi:4560073 /DB_XREF=UI-R-G0-uu-c-09-0-UI.s1 /CLONE=UI-R-G0-uu-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.38653.1 /TIER=ConsEnd /STK=2 /UG=Rn.38653 /UG_TITLE=ESTs AI575697 0005488 // binding // inferred from electronic annotation 1385899_at BE113381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113381 /DB_XREF=gi:8505486 /DB_XREF=UI-R-BJ1-awe-f-12-0-UI.s1 /CLONE=UI-R-BJ1-awe-f-12-0-UI /FEA=EST /CNT=4 /TID=Rn.33887.1 /TIER=ConsEnd /STK=2 /UG=Rn.33887 /UG_TITLE=ESTs BE113381 tripartite motif-containing 16 Trim16 303214 NM_001135033 0032526 // response to retinoic acid // not recorded /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043966 // histone H3 acetylation // not recorded /// 0043967 // histone H4 acetylation // not recorded /// 0045618 // positive regulation of keratinocyte differentiation // not recorded /// 0046683 // response to organophosphorus // not recorded /// 0048386 // positive regulation of retinoic acid receptor signaling pathway // not recorded /// 0050718 // positive regulation of interleukin-1 beta secretion // not recorded /// 0060416 // response to growth hormone stimulus // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016605 // PML body // not recorded 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0019966 // interleukin-1 binding // not recorded /// 0032089 // NACHT domain binding // not recorded 1385901_at BE118197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118197 /DB_XREF=gi:8510342 /DB_XREF=UI-R-BJ1-azo-d-01-0-UI.s1 /CLONE=UI-R-BJ1-azo-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.24312.1 /TIER=ConsEnd /STK=2 /UG=Rn.24312 /UG_TITLE=ESTs BE118197 phosphatidylserine synthase 2 Ptdss2 293620 NM_001106316 0006659 // phosphatidylserine biosynthetic process // inferred from electronic annotation /// 0006659 // phosphatidylserine biosynthetic process // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 0003882 // CDP-diacylglycerol-serine O-phosphatidyltransferase activity // inferred from electronic annotation /// 0003882 // CDP-diacylglycerol-serine O-phosphatidyltransferase activity // not recorded 1385903_at AA859627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859627 /DB_XREF=gi:4230172 /DB_XREF=UI-R-E0-bs-h-03-0-UI.s1 /CLONE=UI-R-E0-bs-h-03-0-UI /FEA=EST /CNT=4 /TID=Rn.25.1 /TIER=ConsEnd /STK=0 /UG=Rn.25 /UG_TITLE=ESTs AA859627 1385904_at BG153342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG153342 /DB_XREF=gi:12665372 /DB_XREF=nag12h07.x1 /CLONE=IMAGE:4176229 /FEA=EST /CNT=4 /TID=Rn.48991.1 /TIER=ConsEnd /STK=2 /UG=Rn.48991 /UG_TITLE=ESTs BG153342 cold inducible RNA binding protein Cirbp 81825 NM_031147 0006950 // response to stress // inferred from electronic annotation /// 0009409 // response to cold // inferred from expression pattern /// 0009411 // response to UV // not recorded /// 0009411 // response to UV // inferred from sequence or structural similarity /// 0017148 // negative regulation of translation // not recorded /// 0034063 // stress granule assembly // inferred from electronic annotation /// 0034063 // stress granule assembly // not recorded /// 0034063 // stress granule assembly // inferred from sequence or structural similarity /// 0045727 // positive regulation of translation // not recorded /// 0045727 // positive regulation of translation // inferred from sequence or structural similarity /// 0048255 // mRNA stabilization // not recorded /// 0048255 // mRNA stabilization // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0010494 // stress granule // inferred from electronic annotation /// 0010494 // stress granule // not recorded /// 0010494 // stress granule // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // not recorded /// 0003730 // mRNA 3'-UTR binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0030371 // translation repressor activity // inferred from electronic annotation /// 0030371 // translation repressor activity // not recorded /// 0030371 // translation repressor activity // inferred from sequence or structural similarity /// 0070181 // SSU rRNA binding // not recorded /// 0070181 // SSU rRNA binding // inferred from sequence or structural similarity 1385905_at AI178616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178616 /DB_XREF=gi:3729254 /DB_XREF=EST222295 /CLONE=RPLCT42 /FEA=EST /CNT=4 /TID=Rn.20143.1 /TIER=ConsEnd /STK=2 /UG=Rn.20143 /UG_TITLE=ESTs AI178616 Heterogeneous nuclear ribonucleoprotein F Hnrnpf 64200 NM_001037285 /// NM_001037286 /// NM_001037287 /// NM_022397 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0008380 // RNA splicing // inferred from electronic annotation /// 0043484 // regulation of RNA splicing // not recorded /// 0043484 // regulation of RNA splicing // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003727 // single-stranded RNA binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0017025 // TATA-binding protein binding // inferred from physical interaction 1385909_at BE118035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118035 /DB_XREF=gi:8510140 /DB_XREF=UI-R-BS1-azi-h-11-0-UI.s1 /CLONE=UI-R-BS1-azi-h-11-0-UI /FEA=EST /CNT=4 /TID=Rn.51363.1 /TIER=ConsEnd /STK=2 /UG=Rn.51363 /UG_TITLE=ESTs BE118035 1385910_at AW533307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533307 /DB_XREF=gi:7175721 /DB_XREF=UI-R-BU0-anf-c-12-0-UI.s1 /CLONE=UI-R-BU0-anf-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.12021.1 /TIER=ConsEnd /STK=0 /UG=Rn.12021 /UG_TITLE=ESTs AW533307 1385911_at AI235281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235281 /DB_XREF=gi:3828787 /DB_XREF=EST231843 /CLONE=ROVCP77 /FEA=EST /CNT=3 /TID=Rn.25190.1 /TIER=ConsEnd /STK=2 /UG=Rn.25190 /UG_TITLE=ESTs AI235281 1385912_at AI412854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412854 /DB_XREF=gi:4256358 /DB_XREF=EST241154 /CLONE=RBRDQ46 /FEA=EST /CNT=3 /TID=Rn.43164.1 /TIER=ConsEnd /STK=2 /UG=Rn.43164 /UG_TITLE=ESTs AI412854 dual specificity phosphatase 15 Dusp15 362238 NM_001108598 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1385914_at AI714147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI714147 /DB_XREF=gi:5017947 /DB_XREF=UI-R-AG1-aag-b-04-0-UI.s1 /CLONE=UI-R-AG1-aag-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.41137.1 /TIER=ConsEnd /STK=2 /UG=Rn.41137 /UG_TITLE=ESTs, Weakly similar to HXC8 RAT HOMEOBOX PROTEIN HOX-C8 (R.norvegicus) AI714147 Iroquois homeobox 5 Irx5 498918 NM_001030044 0002027 // regulation of heart rate // inferred from electronic annotation /// 0002027 // regulation of heart rate // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0042551 // neuron maturation // inferred from electronic annotation /// 0042551 // neuron maturation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048468 // cell development // inferred from electronic annotation /// 0048468 // cell development // not recorded /// 0060040 // retinal bipolar neuron differentiation // inferred from electronic annotation /// 0060040 // retinal bipolar neuron differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1385916_at AI639015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639015 /DB_XREF=gi:4700049 /DB_XREF=rx00967s /CLONE=rx00967 /FEA=EST /CNT=3 /TID=Rn.28835.1 /TIER=ConsEnd /STK=2 /UG=Rn.28835 /UG_TITLE=ESTs AI639015 similar to NMDA receptor regulated 1-like LOC686240 686240 XM_001073064 0005488 // binding // inferred from electronic annotation 1385919_at AA957343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957343 /DB_XREF=gi:4277233 /DB_XREF=UI-R-E1-fu-h-11-0-UI.s1 /CLONE=UI-R-E1-fu-h-11-0-UI /FEA=EST /CNT=8 /TID=Rn.7465.1 /TIER=ConsEnd /STK=1 /UG=Rn.7465 /UG_TITLE=ESTs AA957343 1385921_at BF550329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550329 /DB_XREF=gi:11660059 /DB_XREF=UI-R-E0-ce-f-09-0-UI.r1 /CLONE=UI-R-E0-ce-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.48822.1 /TIER=ConsEnd /STK=1 /UG=Rn.48822 /UG_TITLE=ESTs, Weakly similar to T21453 hypothetical protein F27D4.4 - Caenorhabditis elegans (C.elegans) BF550329 zinc finger CCCH-type containing 15 Zc3h15 362154 NM_001010963 0019221 // cytokine-mediated signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385922_at BM385585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385585 /DB_XREF=gi:18185638 /DB_XREF=UI-R-DM1-ckd-k-12-0-UI.s1 /CLONE=UI-R-DM1-ckd-k-12-0-UI /FEA=EST /CNT=5 /TID=Rn.55372.1 /TIER=ConsEnd /STK=0 /UG=Rn.55372 /UG_TITLE=ESTs BM385585 HLA-B associated transcript 2-like Bat2l 296637 NM_001134518 0005515 // protein binding // not recorded 1385923_at AA944139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944139 /DB_XREF=gi:3104055 /DB_XREF=EST199638 /CLONE=REMAB78 /FEA=EST /CNT=5 /TID=Rn.22987.1 /TIER=ConsEnd /STK=0 /UG=Rn.22987 /UG_TITLE=ESTs AA944139 Inhibitor of DNA binding 4 Id4 291023 NM_175582 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0007405 // neuroblast proliferation // inferred from electronic annotation /// 0007405 // neuroblast proliferation // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0021895 // cerebral cortex neuron differentiation // inferred from electronic annotation /// 0021895 // cerebral cortex neuron differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0048712 // negative regulation of astrocyte differentiation // inferred from electronic annotation /// 0048712 // negative regulation of astrocyte differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1385924_at AI454060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454060 /DB_XREF=gi:4291082 /DB_XREF=UI-R-BT0-qa-f-09-0-UI.s1 /CLONE=UI-R-BT0-qa-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.34451.1 /TIER=ConsEnd /STK=1 /UG=Rn.34451 /UG_TITLE=ESTs AI454060 1385925_at AA963975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963975 /DB_XREF=gi:4278851 /DB_XREF=UI-R-C0-gs-c-06-0-UI.s1 /CLONE=UI-R-C0-gs-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.23216.2 /TIER=ConsEnd /STK=1 /UG=Rn.23216 /UG_TITLE=ESTs AA963975 1385926_at BF550565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550565 /DB_XREF=gi:11660295 /DB_XREF=UI-R-C0-jk-h-12-0-UI.r1 /CLONE=UI-R-C0-jk-h-12-0-UI /FEA=EST /CNT=4 /TID=Rn.23216.2 /TIER=ConsEnd /STK=0 /UG=Rn.23216 /UG_TITLE=ESTs BF550565 1385927_at AA965251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965251 /DB_XREF=gi:4280125 /DB_XREF=UI-R-C0-hd-a-09-0-UI.s1 /CLONE=UI-R-C0-hd-a-09-0-UI /FEA=EST /CNT=4 /TID=Rn.12051.1 /TIER=ConsEnd /STK=1 /UG=Rn.12051 /UG_TITLE=ESTs AA965251 homeo box C4 Hoxc4 24459 NM_001109884 0001501 // skeletal system development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048562 // embryonic organ morphogenesis // not recorded /// 0051216 // cartilage development // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1385928_at AI175564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175564 /DB_XREF=gi:4134803 /DB_XREF=EST219119 /CLONE=ROVBC05 /FEA=EST /CNT=4 /TID=Rn.42472.1 /TIER=ConsEnd /STK=1 /UG=Rn.42472 /UG_TITLE=ESTs, Weakly similar to SMA7_RAT MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG 7 (SMAD 7) (MOTHERS AGAINST DPP HOMOLOG 7) (SMAD7) (R.norvegicus) AI175564 SMAD family member 6 Smad6 367100 NM_001109002 0001657 // ureteric bud development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006955 // immune response // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007352 // zygotic specification of dorsal/ventral axis // not recorded /// 0010991 // negative regulation of SMAD protein complex assembly // not recorded /// 0030509 // BMP signaling pathway // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0034616 // response to laminar fluid shear stress // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043154 // negative regulation of caspase activity // not recorded /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045750 // positive regulation of S phase of mitotic cell cycle // not recorded /// 0060394 // negative regulation of pathway-restricted SMAD protein phosphorylation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030617 // transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity // not recorded /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0034713 // type I transforming growth factor beta receptor binding // not recorded /// 0070410 // co-SMAD binding // not recorded /// 0070411 // I-SMAD binding // not recorded /// 0070412 // R-SMAD binding // not recorded /// 0070698 // type I activin receptor binding // not recorded 1385929_at AI171447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171447 /DB_XREF=gi:3711487 /DB_XREF=EST217408 /CLONE=RMUBL06 /FEA=EST /CNT=4 /TID=Rn.40398.1 /TIER=ConsEnd /STK=1 /UG=Rn.40398 /UG_TITLE=ESTs AI171447 zinc finger protein 11 LOC100363065 100363065 XM_002724835 /// XM_002727961 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1385930_at AI229697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229697 /DB_XREF=gi:3813584 /DB_XREF=EST226392 /CLONE=REMCK72 /FEA=EST /CNT=4 /TID=Rn.40398.1 /TIER=ConsEnd /STK=1 /UG=Rn.40398 /UG_TITLE=ESTs AI229697 1385931_at AW535564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535564 /DB_XREF=gi:7177978 /DB_XREF=UI-R-C4-aly-a-08-0-UI.s1 /CLONE=UI-R-C4-aly-a-08-0-UI /FEA=EST /CNT=4 /TID=Rn.68238.1 /TIER=ConsEnd /STK=1 /UG=Rn.68238 /UG_TITLE=ESTs, Weakly similar to S28261 centromere protein E (H.sapiens) AW535564 hook homolog 3 (Drosophila) Hook3 306548 NM_001136098 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0007032 // endosome organization // inferred from electronic annotation /// 0007032 // endosome organization // not recorded /// 0007040 // lysosome organization // inferred from electronic annotation /// 0007040 // lysosome organization // not recorded /// 0008333 // endosome to lysosome transport // inferred from electronic annotation /// 0008333 // endosome to lysosome transport // not recorded /// 0031122 // cytoplasmic microtubule organization // inferred from electronic annotation /// 0031122 // cytoplasmic microtubule organization // not recorded /// 0045022 // early endosome to late endosome transport // inferred from electronic annotation /// 0045022 // early endosome to late endosome transport // not recorded /// 0051645 // Golgi localization // inferred from electronic annotation /// 0051645 // Golgi localization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005801 // cis-Golgi network // inferred from electronic annotation /// 0005801 // cis-Golgi network // not recorded /// 0030897 // HOPS complex // inferred from electronic annotation /// 0030897 // HOPS complex // not recorded /// 0070695 // FHF complex // inferred from electronic annotation /// 0070695 // FHF complex // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1385933_at AI709424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709424 /DB_XREF=gi:4999200 /DB_XREF=UI-R-C3-ss-b-06-0-UI.s1 /CLONE=UI-R-C3-ss-b-06-0-UI /FEA=EST /CNT=4 /TID=Rn.3266.1 /TIER=ConsEnd /STK=1 /UG=Rn.3266 /UG_TITLE=ESTs AI709424 1385935_at AI577552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577552 /DB_XREF=gi:4561928 /DB_XREF=UI-R-Y0-vk-b-09-0-UI.s1 /CLONE=UI-R-Y0-vk-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.37927.1 /TIER=ConsEnd /STK=1 /UG=Rn.37927 /UG_TITLE=ESTs AI577552 1385938_at BI289749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289749 /DB_XREF=gi:14947648 /DB_XREF=UI-R-DK0-cfn-g-04-0-UI.s1 /CLONE=UI-R-DK0-cfn-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.76163.1 /TIER=ConsEnd /STK=1 /UG=Rn.76163 /UG_TITLE=ESTs, Weakly similar to ZK1058.5.p (Caenorhabditis elegans) (C.elegans) BI289749 methyltransferase like 6 Mettl6 290564 NM_001007623 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1385940_at AI102967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102967 /DB_XREF=gi:3707598 /DB_XREF=EST212256 /CLONE=REMBV54 /FEA=EST /CNT=3 /TID=Rn.9343.2 /TIER=ConsEnd /STK=0 /UG=Rn.9343 /UG_TITLE=ESTs AI102967 Ubiquitin specific peptidase 40 Usp40 316599 NM_001134885 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1385941_at BI295778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295778 /DB_XREF=gi:14959556 /DB_XREF=UI-R-DK0-cfa-e-01-0-UI.s1 /CLONE=UI-R-DK0-cfa-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.79755.1 /TIER=ConsEnd /STK=1 /UG=Rn.79755 /UG_TITLE=ESTs BI295778 Wolf-Hirschhorn syndrome candidate 1-like 1 (human) Whsc1l1 290831 NM_001106090 0016571 // histone methylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1385944_at AA875348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875348 /DB_XREF=gi:4231228 /DB_XREF=UI-R-E0-co-b-06-0-UI.s1 /CLONE=UI-R-E0-co-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.2887.1 /TIER=ConsEnd /STK=1 /UG=Rn.2887 /UG_TITLE=ESTs AA875348 1385945_at BF549678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549678 /DB_XREF=gi:11659408 /DB_XREF=UI-R-A0-as-h-02-0-UI.r1 /CLONE=UI-R-A0-as-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.35073.1 /TIER=ConsEnd /STK=1 /UG=Rn.35073 /UG_TITLE=ESTs BF549678 ephrin A2 Efna2 84358 NM_001168670 0007411 // axon guidance // inferred from expression pattern /// 0021772 // olfactory bulb development // inferred from expression pattern /// 0042472 // inner ear morphogenesis // traceable author statement /// 0048013 // ephrin receptor signaling pathway // traceable author statement 0016020 // membrane // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from direct assay /// 0031594 // neuromuscular junction // not recorded /// 0043204 // perikaryon // inferred from direct assay /// 0043204 // perikaryon // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046875 // ephrin receptor binding // traceable author statement 1385948_at BI296967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296967 /DB_XREF=gi:14961912 /DB_XREF=UI-R-DK0-cgj-f-08-0-UI.s1 /CLONE=UI-R-DK0-cgj-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.64123.1 /TIER=ConsEnd /STK=1 /UG=Rn.64123 /UG_TITLE=ESTs BI296967 1385950_at AI454926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454926 /DB_XREF=gi:4297142 /DB_XREF=UI-R-C2p-ql-d-10-0-UI.s1 /CLONE=UI-R-C2p-ql-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.32970.1 /TIER=ConsEnd /STK=1 /UG=Rn.32970 /UG_TITLE=ESTs AI454926 family with sequence similarity 131, member B Fam131b 500102 NM_001025046 1385953_at AI454608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454608 /DB_XREF=gi:4294917 /DB_XREF=UI-R-A0-ap-g-12-0-UI.s1 /CLONE=UI-R-A0-ap-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.35070.2 /TIER=ConsEnd /STK=1 /UG=Rn.35070 /UG_TITLE=ESTs AI454608 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 Mllt3 114510 NM_053718 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007379 // segment specification // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1385954_at BG371790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371790 /DB_XREF=gi:13268327 /DB_XREF=UI-R-CV0-bri-c-10-0-UI.s1 /CLONE=UI-R-CV0-bri-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.18127.1 /TIER=ConsEnd /STK=1 /UG=Rn.18127 /UG_TITLE=ESTs BG371790 hypothetical protein LOC100125362 LOC100125362 100125362 NM_001103354 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1385955_at AI029023 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029023 /DB_XREF=gi:4295693 /DB_XREF=UI-R-C0-ik-a-06-0-UI.s1 /CLONE=UI-R-C0-ik-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.18127.1 /TIER=ConsEnd /STK=0 /UG=Rn.18127 /UG_TITLE=ESTs AI029023 Hypothetical protein LOC100125362 rCG_58138 100125362 NM_001103354 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1385956_at BF289086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289086 /DB_XREF=gi:11220156 /DB_XREF=EST453677 /CLONE=RGIHA93 /FEA=EST /CNT=3 /TID=Rn.25275.2 /TIER=ConsEnd /STK=1 /UG=Rn.25275 /UG_TITLE=ESTs, Weakly similar to T19442 hypothetical protein C25A1.7a - Caenorhabditis elegans (C.elegans) BF289086 1385959_at AI176851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176851 /DB_XREF=gi:3727489 /DB_XREF=EST220454 /CLONE=ROVBX69 /FEA=EST /CNT=3 /TID=Rn.54110.1 /TIER=ConsEnd /STK=1 /UG=Rn.54110 /UG_TITLE=ESTs AI176851 Son of sevenless homolog 1 (Drosophila) Sos1 313845 NM_001100716 0006915 // apoptosis // not recorded /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // inferred from mutant phenotype /// 0007265 // Ras protein signal transduction // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0045742 // positive regulation of epidermal growth factor receptor signaling pathway // inferred from expression pattern /// 0048011 // nerve growth factor receptor signaling pathway // inferred from mutant phenotype /// 0050790 // regulation of catalytic activity // not recorded /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005088 // Ras guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0017124 // SH3 domain binding // inferred from physical interaction 1385961_at BF561079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561079 /DB_XREF=gi:11670809 /DB_XREF=UI-R-E1-fd-h-08-0-UI.r1 /CLONE=UI-R-E1-fd-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.8954.1 /TIER=ConsEnd /STK=1 /UG=Rn.8954 /UG_TITLE=ESTs BF561079 Kruppel-like factor 5 Klf5 84410 NM_053394 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from expression pattern /// 0030033 // microvillus assembly // not recorded /// 0030033 // microvillus assembly // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1385962_x_at BF287903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287903 /DB_XREF=gi:11218973 /DB_XREF=EST452494 /CLONE=RGIGL53 /FEA=EST /CNT=3 /TID=Rn.20030.2 /TIER=ConsEnd /STK=1 /UG=Rn.20030 /UG_TITLE=ESTs BF287903 B lymphoid tyrosine kinase Blk 364403 NM_001025751 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1385964_at AI237569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237569 /DB_XREF=gi:3831075 /DB_XREF=EST234131 /CLONE=RPLDA87 /FEA=EST /CNT=3 /TID=Rn.55252.1 /TIER=ConsEnd /STK=0 /UG=Rn.55252 /UG_TITLE=ESTs AI237569 1385965_at AI045533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045533 /DB_XREF=gi:3292352 /DB_XREF=UI-R-C1-jz-c-04-0-UI.s2 /CLONE=UI-R-C1-jz-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.16247.1 /TIER=ConsEnd /STK=1 /UG=Rn.16247 /UG_TITLE=ESTs AI045533 Ankhd1-Eif4ebp3 fusion transcript Ankhd1-Eif4ebp3 679725 XM_001054207 /// XM_002725328 /// XM_002725329 0003723 // RNA binding // inferred from electronic annotation 1385967_at BF389767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389767 /DB_XREF=gi:11374603 /DB_XREF=UI-R-BS2-bdo-e-05-0-UI.s1 /CLONE=UI-R-BS2-bdo-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.64471.3 /TIER=ConsEnd /STK=0 /UG=Rn.64471 /UG_TITLE=ESTs BF389767 forkhead box K2 Foxk2 303753 NM_001107075 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0000287 // magnesium ion binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1385969_at AI233226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233226 /DB_XREF=gi:3817106 /DB_XREF=EST229914 /CLONE=RKIDC43 /FEA=EST /CNT=3 /TID=Rn.24707.1 /TIER=ConsEnd /STK=1 /UG=Rn.24707 /UG_TITLE=ESTs AI233226 0006508 // proteolysis // inferred from electronic annotation 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1385970_at BF289079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289079 /DB_XREF=gi:11220149 /DB_XREF=EST453670 /CLONE=RGIHA87 /FEA=EST /CNT=3 /TID=Rn.55700.1 /TIER=ConsEnd /STK=1 /UG=Rn.55700 /UG_TITLE=ESTs, Highly similar to T42719 TPR-containingSH2-binding phosphoprotein - mouse (M.musculus) BF289079 Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) Ctr9 293184 NM_001100661 /// XM_001077817 /// XM_238127 0010390 // histone monoubiquitination // inferred from electronic annotation /// 0010390 // histone monoubiquitination // not recorded /// 0033523 // histone H2B ubiquitination // inferred from electronic annotation /// 0033523 // histone H2B ubiquitination // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016593 // Cdc73/Paf1 complex // inferred from electronic annotation /// 0016593 // Cdc73/Paf1 complex // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042169 // SH2 domain binding // inferred from electronic annotation /// 0042169 // SH2 domain binding // not recorded 1385972_at AA800770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800770 /DB_XREF=gi:4131536 /DB_XREF=EST190267 /CLONE=RLUAL25 /FEA=EST /CNT=3 /TID=Rn.6637.1 /TIER=ConsEnd /STK=1 /UG=Rn.6637 /UG_TITLE=ESTs AA800770 1385973_at AI717265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717265 /DB_XREF=gi:5034521 /DB_XREF=UI-R-Y0-aca-a-12-0-UI.s1 /CLONE=UI-R-Y0-aca-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.41182.1 /TIER=ConsEnd /STK=1 /UG=Rn.41182 /UG_TITLE=ESTs AI717265 1385974_at BM384723 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384723 /DB_XREF=gi:18184776 /DB_XREF=UI-R-CN1-cjl-f-15-0-UI.s2 /CLONE=UI-R-CN1-cjl-f-15-0-UI /FEA=EST /CNT=3 /TID=Rn.51879.1 /TIER=ConsEnd /STK=1 /UG=Rn.51879 /UG_TITLE=ESTs BM384723 par-6 partitioning defective 6 homolog gamma (C. elegans) Pard6g 307237 NM_001100973 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1385975_at AA859916 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859916 /DB_XREF=gi:4230452 /DB_XREF=UI-R-E0-cg-b-10-0-UI.s1 /CLONE=UI-R-E0-cg-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.21405.1 /TIER=ConsEnd /STK=1 /UG=Rn.21405 /UG_TITLE=ESTs AA859916 1385977_at BF557320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557320 /DB_XREF=gi:11667050 /DB_XREF=UI-R-A1-ex-b-07-0-UI.r1 /CLONE=UI-R-A1-ex-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.55417.1 /TIER=ConsEnd /STK=0 /UG=Rn.55417 /UG_TITLE=ESTs BF557320 zinc finger protein 644 Znf644 305127 NM_001139484 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1385978_at AI072788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072788 /DB_XREF=gi:3398982 /DB_XREF=UI-R-Y0-lw-b-01-0-UI.s1 /CLONE=UI-R-Y0-lw-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.20262.2 /TIER=ConsEnd /STK=1 /UG=Rn.20262 /UG_TITLE=ESTs AI072788 1385980_at AI228059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228059 /DB_XREF=gi:3811946 /DB_XREF=EST224754 /CLONE=RBRCP58 /FEA=EST /CNT=2 /TID=Rn.51624.1 /TIER=ConsEnd /STK=1 /UG=Rn.51624 /UG_TITLE=ESTs, Moderately similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) AI228059 DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae) Dcun1d1 310324 NM_001107668 0000151 // ubiquitin ligase complex // not recorded 0005515 // protein binding // not recorded 1385981_at BF394800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394800 /DB_XREF=gi:11379758 /DB_XREF=UI-R-CA0-bfz-b-02-0-UI.s1 /CLONE=UI-R-CA0-bfz-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.58355.1 /TIER=ConsEnd /STK=1 /UG=Rn.58355 /UG_TITLE=ESTs BF394800 lipid phosphate phosphatase-related protein type 4 Lppr4 295401 NM_001001508 0007409 // axonogenesis // inferred from direct assay /// 0046839 // phospholipid dephosphorylation // inferred from direct assay 0005887 // integral to plasma membrane // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008195 // phosphatidate phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042577 // lipid phosphatase activity // inferred from direct assay 1385983_at AI235297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235297 /DB_XREF=gi:3828803 /DB_XREF=EST231859 /CLONE=ROVCQ01 /FEA=EST /CNT=2 /TID=Rn.25313.1 /TIER=ConsEnd /STK=1 /UG=Rn.25313 /UG_TITLE=ESTs AI235297 1385985_at BG663205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663205 /DB_XREF=gi:13885127 /DB_XREF=DRAAAFA05 /CLONE=DRAAAFA05 /FEA=EST /CNT=2 /TID=Rn.76524.1 /TIER=ConsEnd /STK=0 /UG=Rn.76524 /UG_TITLE=ESTs BG663205 1385986_at BF391203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391203 /DB_XREF=gi:11376051 /DB_XREF=UI-R-CA1-bcq-e-09-0-UI.s1 /CLONE=UI-R-CA1-bcq-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.57431.1 /TIER=ConsEnd /STK=1 /UG=Rn.57431 /UG_TITLE=ESTs BF391203 1385987_at BE098157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098157 /DB_XREF=gi:8489985 /DB_XREF=UI-R-BJ1-ata-b-05-0-UI.s1 /CLONE=UI-R-BJ1-ata-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.49759.1 /TIER=ConsEnd /STK=0 /UG=Rn.49759 /UG_TITLE=ESTs BE098157 1385988_at BF287243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287243 /DB_XREF=gi:11218299 /DB_XREF=EST451820 /CLONE=RGIGD34 /FEA=EST /CNT=2 /TID=Rn.24574.1 /TIER=ConsEnd /STK=1 /UG=Rn.24574 /UG_TITLE=ESTs BF287243 H6 family homeobox 1 Hmx1 360960 NM_001108363 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1385990_at BG665161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665161 /DB_XREF=gi:13887083 /DB_XREF=DRABZC12 /CLONE=DRABZC12 /FEA=EST /CNT=2 /TID=Rn.67295.1 /TIER=ConsEnd /STK=0 /UG=Rn.67295 /UG_TITLE=ESTs BG665161 similar to zinc finger protein ZFP RGD1565545 308337 NM_001134544 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1385992_at AI406700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406700 /DB_XREF=gi:4250204 /DB_XREF=EST234987 /CLONE=ROVDV53 /FEA=EST /CNT=2 /TID=Rn.43111.1 /TIER=ConsEnd /STK=0 /UG=Rn.43111 /UG_TITLE=ESTs AI406700 1385994_at AI232279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232279 /DB_XREF=gi:4135738 /DB_XREF=EST228967 /CLONE=RKIBZ68 /FEA=EST /CNT=2 /TID=Rn.31584.1 /TIER=ConsEnd /STK=1 /UG=Rn.31584 /UG_TITLE=ESTs, Highly similar to SP11 MOUSE SPO11 PROTEIN HOMOLOG (M.musculus) AI232279 SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae) Spo11 366261 NM_001108964 0000238 // zygotene // not recorded /// 0001541 // ovarian follicle development // not recorded /// 0006259 // DNA metabolic process // inferred from electronic annotation /// 0007131 // reciprocal meiotic recombination // inferred from electronic annotation /// 0007131 // reciprocal meiotic recombination // not recorded /// 0007141 // male meiosis I // not recorded /// 0007286 // spermatid development // not recorded 0005694 // chromosome // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1385997_at AA893688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893688 /DB_XREF=gi:3020567 /DB_XREF=EST197491 /CLONE=RPLAI45 /FEA=EST /CNT=2 /TID=Rn.14821.1 /TIER=ConsEnd /STK=1 /UG=Rn.14821 /UG_TITLE=ESTs AA893688 1385999_at AA849923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849923 /DB_XREF=gi:4131775 /DB_XREF=EST192690 /CLONE=RMUAK61 /FEA=EST /CNT=2 /TID=Rn.81249.1 /TIER=ConsEnd /STK=1 /UG=Rn.81249 /UG_TITLE=ESTs AA849923 YME1-like 1 (S. cerevisiae) Yme1l1 114217 NM_053682 0006508 // proteolysis // inferred from electronic annotation /// 0030163 // protein catabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386002_at AI236841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236841 /DB_XREF=gi:3830347 /DB_XREF=EST233403 /CLONE=ROVDL22 /FEA=EST /CNT=2 /TID=Rn.25394.1 /TIER=ConsEnd /STK=1 /UG=Rn.25394 /UG_TITLE=ESTs AI236841 1386003_at BF286548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF286548 /DB_XREF=gi:11217618 /DB_XREF=EST451139 /CLONE=RGIFR05 /FEA=EST /CNT=2 /TID=Rn.55363.1 /TIER=ConsEnd /STK=1 /UG=Rn.55363 /UG_TITLE=ESTs BF286548 mortality factor 4 like 1 Morf4l1 300891 NM_001011999 0000724 // double-strand break repair via homologous recombination // inferred from sequence or structural similarity /// 0006281 // DNA repair // inferred from electronic annotation /// 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016575 // histone deacetylation // inferred from sequence or structural similarity /// 0040008 // regulation of growth // inferred from electronic annotation /// 0043967 // histone H4 acetylation // inferred from sequence or structural similarity /// 0043968 // histone H2A acetylation // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016580 // Sin3 complex // inferred from sequence or structural similarity /// 0035267 // NuA4 histone acetyltransferase complex // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003682 // chromatin binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation 1386004_s_at BF286548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF286548 /DB_XREF=gi:11217618 /DB_XREF=EST451139 /CLONE=RGIFR05 /FEA=EST /CNT=2 /TID=Rn.55363.1 /TIER=ConsEnd /STK=1 /UG=Rn.55363 /UG_TITLE=ESTs BF286548 mortality factor 4 like 1 Morf4l1 300891 NM_001011999 0000724 // double-strand break repair via homologous recombination // inferred from sequence or structural similarity /// 0006281 // DNA repair // inferred from electronic annotation /// 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016575 // histone deacetylation // inferred from sequence or structural similarity /// 0040008 // regulation of growth // inferred from electronic annotation /// 0043967 // histone H4 acetylation // inferred from sequence or structural similarity /// 0043968 // histone H2A acetylation // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016580 // Sin3 complex // inferred from sequence or structural similarity /// 0035267 // NuA4 histone acetyltransferase complex // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003682 // chromatin binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation 1386005_at AI172490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172490 /DB_XREF=gi:3712530 /DB_XREF=EST218503 /CLONE=RMUCA48 /FEA=EST /CNT=2 /TID=Rn.42287.1 /TIER=ConsEnd /STK=1 /UG=Rn.42287 /UG_TITLE=ESTs AI172490 TBK1 binding protein 1 Tbkbp1 266764 NM_172021 0045087 // innate immune response // inferred from electronic annotation 1386006_at AA866456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866456 /DB_XREF=gi:2961917 /DB_XREF=UI-R-E0-br-e-10-0-UI.s1 /CLONE=UI-R-E0-br-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.79854.2 /TIER=ConsEnd /STK=1 /UG=Rn.79854 /UG_TITLE=ESTs, Weakly similar to LA RAT LUPUS LA PROTEIN HOMOLOG (R.norvegicus) AA866456 La ribonucleoprotein domain family, member 7 Larp7 686883 NM_001044290 0006396 // RNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1386008_at AW914833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW914833 /DB_XREF=gi:8080514 /DB_XREF=EST346137 /CLONE=RGIBH82 /FEA=EST /CNT=2 /TID=Rn.32381.1 /TIER=ConsEnd /STK=0 /UG=Rn.32381 /UG_TITLE=ESTs AW914833 polymerase (RNA) III (DNA directed) polypeptide F Polr3f 311487 NM_001107784 0006350 // transcription // inferred from electronic annotation /// 0032728 // positive regulation of interferon-beta production // not recorded /// 0045089 // positive regulation of innate immune response // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1386009_at AA946110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946110 /DB_XREF=gi:4132697 /DB_XREF=EST201609 /CLONE=RLUBB34 /FEA=EST /CNT=2 /TID=Rn.30328.1 /TIER=ConsEnd /STK=1 /UG=Rn.30328 /UG_TITLE=ESTs AA946110 colony stimulating factor 3 receptor (granulocyte) Csf3r 298518 NM_001106685 0030593 // neutrophil chemotaxis // not recorded 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation 1386012_at BG672820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672820 /DB_XREF=gi:13894919 /DB_XREF=DRN05F11 /CLONE=DRN05F11 /FEA=EST /CNT=2 /TID=Rn.69269.1 /TIER=ConsEnd /STK=0 /UG=Rn.69269 /UG_TITLE=ESTs BG672820 1386013_at AA946294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946294 /DB_XREF=gi:3106210 /DB_XREF=EST201793 /CLONE=RLUBD40 /FEA=EST /CNT=2 /TID=Rn.8022.1 /TIER=ConsEnd /STK=1 /UG=Rn.8022 /UG_TITLE=ESTs AA946294 hypothetical protein LOC100359753 LOC100359753 100359753 XM_002728666 1386016_at BF552305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552305 /DB_XREF=gi:11662035 /DB_XREF=UI-R-C1-lq-b-06-0-UI.r1 /CLONE=UI-R-C1-lq-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.37665.2 /TIER=ConsEnd /STK=0 /UG=Rn.37665 /UG_TITLE=ESTs BF552305 heat shock protein family B (small), member 11 Hspb11 685284 NM_001131002 0007155 // cell adhesion // inferred from electronic annotation 0005929 // cilium // not recorded /// 0005929 // cilium // inferred from electronic annotation /// 0030992 // intraflagellar transport particle B // not recorded /// 0030992 // intraflagellar transport particle B // inferred from electronic annotation 1386018_at AI176253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176253 /DB_XREF=gi:3726891 /DB_XREF=EST219834 /CLONE=ROVBP18 /FEA=EST /CNT=2 /TID=Rn.55648.1 /TIER=ConsEnd /STK=1 /UG=Rn.55648 /UG_TITLE=ESTs AI176253 1386022_at AW921706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921706 /DB_XREF=gi:8087530 /DB_XREF=EST353010 /CLONE=RGIIF40 /FEA=EST /CNT=2 /TID=Rn.18662.2 /TIER=ConsEnd /STK=0 /UG=Rn.18662 /UG_TITLE=ESTs AW921706 1386023_at AI229354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229354 /DB_XREF=gi:3813241 /DB_XREF=EST226049 /CLONE=RBRDH37 /FEA=EST /CNT=2 /TID=Rn.24434.1 /TIER=ConsEnd /STK=1 /UG=Rn.24434 /UG_TITLE=ESTs AI229354 leucine-rich, glioma inactivated 1 /// leucine-rich glioma-inactivated protein 1-like Lgi1 /// LOC100361792 100361792 /// 252892 NM_145769 /// XM_002728912 0050806 // positive regulation of synaptic transmission // inferred from direct assay /// 0051260 // protein homooligomerization // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // non-traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1386026_at BF287062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287062 /DB_XREF=gi:11218132 /DB_XREF=EST451653 /CLONE=RGIFY58 /FEA=EST /CNT=2 /TID=Rn.28221.2 /TIER=ConsEnd /STK=0 /UG=Rn.28221 /UG_TITLE=ESTs BF287062 1386027_at AI409701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409701 /DB_XREF=gi:4253205 /DB_XREF=EST237993 /CLONE=RKIDY07 /FEA=EST /CNT=2 /TID=Rn.43264.1 /TIER=ConsEnd /STK=1 /UG=Rn.43264 /UG_TITLE=ESTs AI409701 retinitis pigmentosa 2 homolog (human) Rp2 367714 NM_001109012 0006183 // GTP biosynthetic process // inferred from electronic annotation /// 0006228 // UTP biosynthetic process // inferred from electronic annotation /// 0006241 // CTP biosynthetic process // inferred from electronic annotation 0004550 // nucleoside diphosphate kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1386029_at BF284035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284035 /DB_XREF=gi:11215105 /DB_XREF=EST448626 /CLONE=RGIEK20 /FEA=EST /CNT=2 /TID=Rn.55255.1 /TIER=ConsEnd /STK=1 /UG=Rn.55255 /UG_TITLE=ESTs, Weakly similar to S21976 probable RNA-directed DNA polymerase (R.norvegicus) BF284035 1386031_at BF288135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288135 /DB_XREF=gi:11219205 /DB_XREF=EST452726 /CLONE=RGIGP92 /FEA=EST /CNT=2 /TID=Rn.55502.1 /TIER=ConsEnd /STK=1 /UG=Rn.55502 /UG_TITLE=ESTs BF288135 Protein kinase D3 Prkd3 313834 NM_001024263 0006468 // protein phosphorylation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386032_at BF288135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288135 /DB_XREF=gi:11219205 /DB_XREF=EST452726 /CLONE=RGIGP92 /FEA=EST /CNT=2 /TID=Rn.55502.1 /TIER=ConsEnd /STK=0 /UG=Rn.55502 /UG_TITLE=ESTs BF288135 protein kinase D3 Prkd3 313834 NM_001024263 0006468 // protein phosphorylation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386035_at BG381661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381661 /DB_XREF=gi:13306133 /DB_XREF=UI-R-CT0-bud-h-08-0-UI.s1 /CLONE=UI-R-CT0-bud-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.26999.1 /TIER=ConsEnd /STK=0 /UG=Rn.26999 /UG_TITLE=ESTs BG381661 1386037_at BF288392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288392 /DB_XREF=gi:11219462 /DB_XREF=EST452983 /CLONE=RGIGT30 /FEA=EST /CNT=2 /TID=Rn.55575.1 /TIER=ConsEnd /STK=1 /UG=Rn.55575 /UG_TITLE=ESTs BF288392 1386038_x_at BF288392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288392 /DB_XREF=gi:11219462 /DB_XREF=EST452983 /CLONE=RGIGT30 /FEA=EST /CNT=2 /TID=Rn.55575.1 /TIER=ConsEnd /STK=1 /UG=Rn.55575 /UG_TITLE=ESTs BF288392 1386039_x_at BF288392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288392 /DB_XREF=gi:11219462 /DB_XREF=EST452983 /CLONE=RGIGT30 /FEA=EST /CNT=2 /TID=Rn.55575.1 /TIER=ConsEnd /STK=0 /UG=Rn.55575 /UG_TITLE=ESTs BF288392 1386040_at AA925780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925780 /DB_XREF=gi:4236971 /DB_XREF=UI-R-A1-et-e-04-0-UI.s1 /CLONE=UI-R-A1-et-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.18297.2 /TIER=ConsEnd /STK=1 /UG=Rn.18297 /UG_TITLE=ESTs, Moderately similar to CPBP RAT CORE PROMOTER ELEMENT-BINDING PROTEIN (R.norvegicus) AA925780 Kruppel-like factor 2 (lung) Klf2 306330 NM_001007684 0006350 // transcription // inferred from electronic annotation /// 0032715 // negative regulation of interleukin-6 production // inferred from mutant phenotype /// 0034616 // response to laminar fluid shear stress // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from mutant phenotype /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0070301 // cellular response to hydrogen peroxide // inferred from expression pattern /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1386041_a_at BF288243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288243 /DB_XREF=gi:11219313 /DB_XREF=EST452834 /CLONE=RGIGR44 /FEA=EST /CNT=2 /TID=Rn.18297.2 /TIER=ConsEnd /STK=0 /UG=Rn.18297 /UG_TITLE=ESTs, Moderately similar to CPBP RAT CORE PROMOTER ELEMENT-BINDING PROTEIN (R.norvegicus) BF288243 Kruppel-like factor 2 (lung) Klf2 306330 NM_001007684 0006350 // transcription // inferred from electronic annotation /// 0032715 // negative regulation of interleukin-6 production // inferred from mutant phenotype /// 0034616 // response to laminar fluid shear stress // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from mutant phenotype /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0070301 // cellular response to hydrogen peroxide // inferred from expression pattern /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1386042_at AW534967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534967 /DB_XREF=gi:7177381 /DB_XREF=UI-R-BS0-any-f-02-0-UI.s1 /CLONE=UI-R-BS0-any-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.48405.1 /TIER=ConsEnd /STK=1 /UG=Rn.48405 /UG_TITLE=ESTs AW534967 1386043_at BF289242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289242 /DB_XREF=gi:11220312 /DB_XREF=EST453833 /CLONE=RGIHC64 /FEA=EST /CNT=2 /TID=Rn.25305.1 /TIER=ConsEnd /STK=1 /UG=Rn.25305 /UG_TITLE=ESTs BF289242 1386045_at AA893205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893205 /DB_XREF=gi:3020084 /DB_XREF=EST197008 /CLONE=RKIBD50 /FEA=EST /CNT=2 /TID=Rn.13483.1 /TIER=ConsEnd /STK=1 /UG=Rn.13483 /UG_TITLE=ESTs AA893205 1386047_at AI137207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137207 /DB_XREF=gi:3637984 /DB_XREF=UI-R-C2p-oj-c-11-0-UI.s1 /CLONE=UI-R-C2p-oj-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.39371.2 /TIER=ConsEnd /STK=1 /UG=Rn.39371 /UG_TITLE=ESTs, Moderately similar to PAGT RAT POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE (R.norvegicus) AI137207 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13) Galnt13 311039 NM_199106 0006493 // protein O-linked glycosylation // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // not recorded /// 0005529 // sugar binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1386049_at AI228222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228222 /DB_XREF=gi:3812109 /DB_XREF=EST224917 /CLONE=RBRCS10 /FEA=EST /CNT=2 /TID=Rn.34074.2 /TIER=ConsEnd /STK=1 /UG=Rn.34074 /UG_TITLE=ESTs, Weakly similar to A39113 potassium channel protein RK5 - rat (R.norvegicus) AI228222 potassium channel tetramerisation domain containing 4 Kctd4 691835 NM_001109650 0006813 // potassium ion transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1386051_at H31285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31285 /DB_XREF=gi:976702 /DB_XREF=EST105183 /CLONE=RPCAG61 /FEA=EST /CNT=2 /TID=Rn.22655.1 /TIER=ConsEnd /STK=0 /UG=Rn.22655 /UG_TITLE=ESTs H31285 1386052_at BF290410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290410 /DB_XREF=gi:11221480 /DB_XREF=EST455001 /CLONE=RGIHV57 /FEA=EST /CNT=2 /TID=Rn.6633.1 /TIER=ConsEnd /STK=1 /UG=Rn.6633 /UG_TITLE=ESTs BF290410 Interleukin 7 receptor Il7r 294797 NM_001106418 0000902 // cell morphogenesis // not recorded /// 0001915 // negative regulation of T cell mediated cytotoxicity // not recorded /// 0002377 // immunoglobulin production // not recorded /// 0008361 // regulation of cell size // not recorded /// 0016049 // cell growth // not recorded /// 0030217 // T cell differentiation // not recorded /// 0033089 // positive regulation of T cell differentiation in thymus // not recorded /// 0042100 // B cell proliferation // not recorded /// 0048535 // lymph node development // not recorded /// 0048872 // homeostasis of number of cells // not recorded 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1386053_at AA800971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800971 /DB_XREF=gi:2863926 /DB_XREF=EST190468 /CLONE=RLUAN69 /FEA=EST /CNT=2 /TID=Rn.6676.1 /TIER=ConsEnd /STK=0 /UG=Rn.6676 /UG_TITLE=ESTs AA800971 Similar to RIKEN cDNA 1700025K23 RGD1564163 500554 NM_001109266 1386054_at AA893351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893351 /DB_XREF=gi:3020230 /DB_XREF=EST197154 /CLONE=RKIBF38 /FEA=EST /CNT=2 /TID=Rn.13498.1 /TIER=ConsEnd /STK=1 /UG=Rn.13498 /UG_TITLE=ESTs AA893351 Complement component 1, q subcomponent-like 3 C1ql3 680404 NM_001109403 0005515 // protein binding // not recorded 1386056_at AI229321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229321 /DB_XREF=gi:3813208 /DB_XREF=EST226016 /CLONE=RBRDG91 /FEA=EST /CNT=2 /TID=Rn.14934.2 /TIER=ConsEnd /STK=1 /UG=Rn.14934 /UG_TITLE=ESTs AI229321 1386057_at BF289233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289233 /DB_XREF=gi:11220303 /DB_XREF=EST453824 /CLONE=RGIHC56 /FEA=EST /CNT=2 /TID=Rn.42860.2 /TIER=ConsEnd /STK=1 /UG=Rn.42860 /UG_TITLE=ESTs, Moderately similar to T17234 hypothetical protein DKFZp434J046.1 (H.sapiens) BF289233 1386059_at BF284475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284475 /DB_XREF=gi:11215545 /DB_XREF=EST449066 /CLONE=RGIEQ72 /FEA=EST /CNT=13 /TID=Rn.55181.2 /TIER=ConsEnd /STK=0 /UG=Rn.55181 /UG_TITLE=ESTs BF284475 histone cluster 2, H2be Hist2h2be 295274 XM_001061909 /// XM_227459 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1386061_at BF523573 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523573 /DB_XREF=gi:11631540 /DB_XREF=UI-R-C1-km-g-11-0-UI.r1 /CLONE=UI-R-C1-km-g-11-0-UI /FEA=EST /CNT=4 /TID=Rn.34584.1 /TIER=ConsEnd /STK=0 /UG=Rn.34584 /UG_TITLE=ESTs BF523573 1386062_at AI060227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060227 /DB_XREF=gi:3334004 /DB_XREF=UI-R-C1-lm-f-05-0-UI.s1 /CLONE=UI-R-C1-lm-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.19396.1 /TIER=ConsEnd /STK=0 /UG=Rn.19396 /UG_TITLE=ESTs AI060227 Rho family GTPase 3 Rnd3 295588 NM_001007641 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1386063_at BF559746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559746 /DB_XREF=gi:11669476 /DB_XREF=UI-R-E1-go-e-05-0-UI.r1 /CLONE=UI-R-E1-go-e-05-0-UI /FEA=EST /CNT=4 /TID=Rn.23189.1 /TIER=ConsEnd /STK=0 /UG=Rn.23189 /UG_TITLE=ESTs BF559746 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 Dyrk2 314862 NM_001108100 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded /// 0045725 // positive regulation of glycogen biosynthetic process // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000287 // magnesium ion binding // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0030145 // manganese ion binding // not recorded 1386064_at AI501693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501693 /DB_XREF=gi:4399544 /DB_XREF=UI-R-C0-iw-d-07-0-UI.s1 /CLONE=UI-R-C0-iw-d-07-0-UI /FEA=EST /CNT=4 /TID=Rn.23189.1 /TIER=ConsEnd /STK=0 /UG=Rn.23189 /UG_TITLE=ESTs AI501693 1386065_at AI169118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169118 /DB_XREF=gi:3705426 /DB_XREF=EST214949 /CLONE=RKIBN35 /FEA=EST /CNT=4 /TID=Rn.55986.1 /TIER=ConsEnd /STK=0 /UG=Rn.55986 /UG_TITLE=ESTs AI169118 ankyrin repeat domain 57 Ankrd57 503306 NM_001109364 1386069_at BF549554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549554 /DB_XREF=gi:11659284 /DB_XREF=UI-R-C1-lg-h-07-0-UI.r1 /CLONE=UI-R-C1-lg-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.19192.1 /TIER=ConsEnd /STK=0 /UG=Rn.19192 /UG_TITLE=ESTs BF549554 Sp2 transcription factor Sp2 303499 NM_001107045 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded 1386070_at AA859701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859701 /DB_XREF=gi:4230245 /DB_XREF=UI-R-E0-bx-f-11-0-UI.s1 /CLONE=UI-R-E0-bx-f-11-0-UI /FEA=EST /CNT=4 /TID=Rn.7808.1 /TIER=ConsEnd /STK=0 /UG=Rn.7808 /UG_TITLE=ESTs AA859701 Transducin (beta)-like 1 X-linked receptor 1 Tbl1xr1 365755 NM_001108941 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005876 // spindle microtubule // not recorded /// 0017053 // transcriptional repressor complex // not recorded 0003677 // DNA binding // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008013 // beta-catenin binding // not recorded /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0042393 // histone binding // not recorded /// 0047485 // protein N-terminus binding // not recorded 1386071_at AI070564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070564 /DB_XREF=gi:3396815 /DB_XREF=UI-R-C2-mr-a-02-0-UI.s1 /CLONE=UI-R-C2-mr-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.33460.1 /TIER=ConsEnd /STK=0 /UG=Rn.33460 /UG_TITLE=ESTs AI070564 1386073_at AI043800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043800 /DB_XREF=gi:3290535 /DB_XREF=UI-R-C0-jj-c-01-0-UI.s1 /CLONE=UI-R-C0-jj-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.18726.2 /TIER=ConsEnd /STK=0 /UG=Rn.18726 /UG_TITLE=ESTs, Weakly similar to C61A MOUSE C6.1A PROTEIN (M.musculus) AI043800 Proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 Psmd14 311078 NM_001025689 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0061136 // regulation of proteasomal protein catabolic process // not recorded 0000502 // proteasome complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0061133 // endopeptidase activator activity // not recorded /// 0070628 // proteasome binding // inferred from electronic annotation /// 0070628 // proteasome binding // not recorded 1386074_at AA850705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850705 /DB_XREF=gi:4131877 /DB_XREF=EST193473 /CLONE=ROVAJ71 /FEA=EST /CNT=3 /TID=Rn.22859.1 /TIER=ConsEnd /STK=0 /UG=Rn.22859 /UG_TITLE=ESTs AA850705 myc induced nuclear antigen Mina 266670 NM_153309 0008283 // cell proliferation // inferred from mutant phenotype /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 1386075_at AI710379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI710379 /DB_XREF=gi:5000155 /DB_XREF=UI-R-AG1-aaj-a-10-0-UI.s1 /CLONE=UI-R-AG1-aaj-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.22859.1 /TIER=ConsEnd /STK=0 /UG=Rn.22859 /UG_TITLE=ESTs AI710379 1386076_at BF563176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563176 /DB_XREF=gi:11672906 /DB_XREF=UI-R-BO1-ajg-a-04-0-UI.r1 /CLONE=UI-R-BO1-ajg-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.46380.2 /TIER=ConsEnd /STK=0 /UG=Rn.46380 /UG_TITLE=ESTs BF563176 1386077_at AA891822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891822 /DB_XREF=gi:3018701 /DB_XREF=EST195625 /CLONE=RKIAH26 /FEA=EST /CNT=3 /TID=Rn.24337.1 /TIER=ConsEnd /STK=0 /UG=Rn.24337 /UG_TITLE=ESTs, Highly similar to CMST MOUSE CMP-SIALIC ACID TRANSPORTER (M.musculus) AA891822 Solute carrier family 35 (CMP-sialic acid transporter), member A1 Slc35a1 313139 NM_001107924 0000139 // Golgi membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005338 // nucleotide-sugar transmembrane transporter activity // inferred from electronic annotation /// 0005351 // sugar:hydrogen symporter activity // inferred from electronic annotation 1386078_at AI228537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228537 /DB_XREF=gi:3812424 /DB_XREF=EST225232 /CLONE=RBRCW18 /FEA=EST /CNT=3 /TID=Rn.24337.1 /TIER=ConsEnd /STK=0 /UG=Rn.24337 /UG_TITLE=ESTs, Highly similar to CMST MOUSE CMP-SIALIC ACID TRANSPORTER (M.musculus) AI228537 solute carrier family 35 (CMP-sialic acid transporter), member A1 Slc35a1 313139 NM_001107924 0006810 // transport // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0015780 // nucleotide-sugar transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005338 // nucleotide-sugar transmembrane transporter activity // inferred from electronic annotation /// 0005351 // sugar:hydrogen symporter activity // inferred from electronic annotation 1386080_at BE107815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107815 /DB_XREF=gi:8499920 /DB_XREF=UI-R-CA0-awx-b-12-0-UI.s1 /CLONE=UI-R-CA0-awx-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.56133.2 /TIER=ConsEnd /STK=0 /UG=Rn.56133 /UG_TITLE=ESTs, Weakly similar to A48106 hairy-like gene RHL - rat (R.norvegicus) BE107815 Hairy/enhancer-of-split related with YRPW motif 1 Hey1 155437 NM_001191845 /// XM_001057389 /// XM_342216 0001570 // vasculogenesis // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from direct assay /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010629 // negative regulation of gene expression // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1386081_at AA800678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800678 /DB_XREF=gi:2863633 /DB_XREF=EST190175 /CLONE=RLUAK20 /FEA=EST /CNT=3 /TID=Rn.55930.1 /TIER=ConsEnd /STK=0 /UG=Rn.55930 /UG_TITLE=ESTs AA800678 similar to TICAM-1 LOC363328 363328 XR_007893 /// XR_086352 1386083_at BF542298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542298 /DB_XREF=gi:11633405 /DB_XREF=UI-R-C2-ms-g-01-0-UI.r1 /CLONE=UI-R-C2-ms-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.55608.1 /TIER=ConsEnd /STK=0 /UG=Rn.55608 /UG_TITLE=ESTs BF542298 1386088_at AW141957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141957 /DB_XREF=gi:6161816 /DB_XREF=EST292072 /CLONE=RGICQ22 /FEA=EST /CNT=3 /TID=Rn.12583.2 /TIER=ConsEnd /STK=0 /UG=Rn.12583 /UG_TITLE=ESTs, Weakly similar to T26786 hypothetical protein Y40B1B.8 - Caenorhabditis elegans (C.elegans) AW141957 solute carrier family 25, member 46 Slc25a46 291709 NM_001100515 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1386089_at BF548514 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548514 /DB_XREF=gi:11639621 /DB_XREF=UI-R-A0-ap-h-04-0-UI.r1 /CLONE=UI-R-A0-ap-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.60102.1 /TIER=ConsEnd /STK=0 /UG=Rn.60102 /UG_TITLE=ESTs BF548514 1386090_at BF289454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289454 /DB_XREF=gi:11220524 /DB_XREF=EST454045 /CLONE=RGIHH55 /FEA=EST /CNT=3 /TID=Rn.55773.1 /TIER=ConsEnd /STK=0 /UG=Rn.55773 /UG_TITLE=ESTs BF289454 similar to minichromosome maintenance protein 8 isoform 1 RGD1560557 499437 XR_007676 /// XR_086153 0006260 // DNA replication // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1386093_at BI274863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274863 /DB_XREF=gi:14886175 /DB_XREF=UI-R-CW0-bwe-a-03-0-UI.s1 /CLONE=UI-R-CW0-bwe-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.80021.1 /TIER=ConsEnd /STK=0 /UG=Rn.80021 /UG_TITLE=ESTs BI274863 zinc finger protein 324 Zfp324 365192 XM_001055374 /// XM_344862 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386096_at BG666758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666758 /DB_XREF=gi:13888665 /DB_XREF=DRABUH09 /CLONE=DRABUH09 /FEA=EST /CNT=2 /TID=Rn.49072.2 /TIER=ConsEnd /STK=0 /UG=Rn.49072 /UG_TITLE=ESTs, Highly similar to MTF2_MOUSE METAL-RESPONSE ELEMENT-BINDING TRANSCRIPTION FACTOR 2 (ZINC-REGULATED FACTOR 1) (ZIRF1) (METAL-RESPONSE ELEMENT DNA-BINDING PROTEIN M96) (M.musculus) BG666758 metal response element binding transcription factor 2 Mtf2 360905 NM_001100898 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386097_at AW527230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527230 /DB_XREF=gi:7169644 /DB_XREF=UI-R-BO1-ajs-a-02-0-UI.s1 /CLONE=UI-R-BO1-ajs-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.33315.1 /TIER=ConsEnd /STK=0 /UG=Rn.33315 /UG_TITLE=ESTs AW527230 ankyrin repeat domain 12 Ankrd12 316775 NM_001108238 1386100_at BF288469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288469 /DB_XREF=gi:11219539 /DB_XREF=EST453060 /CLONE=RGIGU15 /FEA=EST /CNT=2 /TID=Rn.17695.1 /TIER=ConsEnd /STK=0 /UG=Rn.17695 /UG_TITLE=ESTs BF288469 Meckel syndrome, type 1 Mks1 287612 NM_001034917 0042384 // cilium assembly // inferred from electronic annotation /// 0042384 // cilium assembly // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0005932 // microtubule basal body // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1386101_at BF288469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288469 /DB_XREF=gi:11219539 /DB_XREF=EST453060 /CLONE=RGIGU15 /FEA=EST /CNT=2 /TID=Rn.17695.1 /TIER=ConsEnd /STK=0 /UG=Rn.17695 /UG_TITLE=ESTs BF288469 eosinophil peroxidase Epx 303414 NM_001107037 0006979 // response to oxidative stress // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0004601 // peroxidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0020037 // heme binding // inferred from electronic annotation 1386102_at AA851046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851046 /DB_XREF=gi:2938586 /DB_XREF=EST193814 /CLONE=ROVAP93 /FEA=EST /CNT=2 /TID=Rn.55585.1 /TIER=ConsEnd /STK=0 /UG=Rn.55585 /UG_TITLE=ESTs AA851046 1386106_at BF288435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288435 /DB_XREF=gi:11219505 /DB_XREF=EST453026 /CLONE=RGIGT78 /FEA=EST /CNT=2 /TID=Rn.55592.1 /TIER=ConsEnd /STK=0 /UG=Rn.55592 /UG_TITLE=ESTs BF288435 zinc finger, CCHC domain containing 24 Zcchc24 361104 NM_001108394 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386109_at BF287631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287631 /DB_XREF=gi:11218701 /DB_XREF=EST452222 /CLONE=RGIGI30 /FEA=EST /CNT=2 /TID=Rn.55445.1 /TIER=ConsEnd /STK=0 /UG=Rn.55445 /UG_TITLE=ESTs BF287631 1386111_at AA998619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998619 /DB_XREF=gi:4291104 /DB_XREF=UI-R-C0-if-e-01-0-UI.s1 /CLONE=UI-R-C0-if-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.7840.3 /TIER=ConsEnd /STK=0 /UG=Rn.7840 /UG_TITLE=ESTs, Weakly similar to T51776 dolichyl-phosphate beta-glucosyltransferase (H.sapiens) AA998619 Dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit Dpm1 296394 NM_001106544 0006506 // GPI anchor biosynthetic process // not recorded /// 0019348 // dolichol metabolic process // inferred from direct assay /// 0019348 // dolichol metabolic process // not recorded /// 0019673 // GDP-mannose metabolic process // inferred from direct assay /// 0035268 // protein mannosylation // not recorded /// 0035269 // protein O-linked mannosylation // not recorded 0005624 // membrane fraction // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0033185 // dolichol-phosphate-mannose synthase complex // not recorded 0004169 // dolichyl-phosphate-mannose-protein mannosyltransferase activity // not recorded /// 0004582 // dolichyl-phosphate beta-D-mannosyltransferase activity // inferred from direct assay /// 0004582 // dolichyl-phosphate beta-D-mannosyltransferase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005537 // mannose binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0043178 // alcohol binding // inferred from direct assay 1386114_at BF550033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550033 /DB_XREF=gi:11659757 /DB_XREF=UI-R-E0-co-h-12-0-UI.r1 /CLONE=UI-R-E0-co-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.3068.2 /TIER=ConsEnd /STK=0 /UG=Rn.3068 /UG_TITLE=ESTs BF550033 similar to integrator complex subunit 6 isoform a LOC681665 681665 XM_002727691 1386115_at BF290493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290493 /DB_XREF=gi:11221563 /DB_XREF=EST455084 /CLONE=RGIHW14 /FEA=EST /CNT=2 /TID=Rn.42847.1 /TIER=ConsEnd /STK=0 /UG=Rn.42847 /UG_TITLE=ESTs BF290493 1386119_at BE110033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110033 /DB_XREF=gi:8502138 /DB_XREF=UI-R-CA0-axj-c-04-0-UI.s1 /CLONE=UI-R-CA0-axj-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.51789.1 /TIER=ConsEnd /STK=2 /UG=Rn.51789 /UG_TITLE=ESTs BE110033 Hypothetical protein LOC689147 LOC689147 689147 XM_001056121 /// XM_001069739 1386120_at BF393607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393607 /DB_XREF=gi:11378469 /DB_XREF=UI-R-CA0-bgd-h-03-0-UI.s1 /CLONE=UI-R-CA0-bgd-h-03-0-UI /FEA=EST /CNT=4 /TID=Rn.51789.1 /TIER=ConsEnd /STK=2 /UG=Rn.51789 /UG_TITLE=ESTs BF393607 Hypothetical protein LOC689147 LOC689147 689147 XM_001056121 /// XM_001069739 1386121_at BF561671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561671 /DB_XREF=gi:11671401 /DB_XREF=UI-R-C0-ib-c-05-0-UI.r1 /CLONE=UI-R-C0-ib-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.12905.2 /TIER=ConsEnd /STK=0 /UG=Rn.12905 /UG_TITLE=ESTs BF561671 similar to hypothetical protein FLJ21127 RGD1566266 304486 NM_001177613 /// XR_009299 /// XR_085992 1386122_at BF397665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397665 /DB_XREF=gi:11382649 /DB_XREF=UI-R-BS2-bed-b-09-0-UI.s1 /CLONE=UI-R-BS2-bed-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.58872.1 /TIER=ConsEnd /STK=0 /UG=Rn.58872 /UG_TITLE=ESTs BF397665 wingless-type MMTV integration site family, member 8B Wnt8b 293990 NM_001106359 0007223 // Wnt receptor signaling pathway, calcium modulating pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0010629 // negative regulation of gene expression // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation 1386123_at BF553538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF553538 /DB_XREF=gi:11663268 /DB_XREF=UI-R-C2-nb-g-11-0-UI.r1 /CLONE=UI-R-C2-nb-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.63988.1 /TIER=ConsEnd /STK=1 /UG=Rn.63988 /UG_TITLE=ESTs BF553538 1386125_at BF389738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389738 /DB_XREF=gi:11374573 /DB_XREF=UI-R-BS2-bdo-b-12-0-UI.s1 /CLONE=UI-R-BS2-bdo-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.58726.1 /TIER=ConsEnd /STK=1 /UG=Rn.58726 /UG_TITLE=ESTs BF389738 homeo box B4 Hoxb4 497988 NM_001100787 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0002011 // morphogenesis of an epithelial sheet // inferred from electronic annotation /// 0002011 // morphogenesis of an epithelial sheet // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0030097 // hemopoiesis // not recorded /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048103 // somatic stem cell division // inferred from electronic annotation /// 0048103 // somatic stem cell division // not recorded /// 0048536 // spleen development // inferred from electronic annotation /// 0048536 // spleen development // not recorded /// 0048539 // bone marrow development // inferred from electronic annotation /// 0048539 // bone marrow development // not recorded /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048705 // skeletal system morphogenesis // not recorded /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0060216 // definitive hemopoiesis // inferred from electronic annotation /// 0060216 // definitive hemopoiesis // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1386128_at BF524010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF524010 /DB_XREF=gi:11631977 /DB_XREF=UI-R-Y0-aci-c-04-0-UI.r1 /CLONE=UI-R-Y0-aci-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.63777.1 /TIER=ConsEnd /STK=1 /UG=Rn.63777 /UG_TITLE=ESTs, Highly similar to TETN MOUSE TETRANECTIN PRECURSOR (M.musculus) BF524010 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1386129_at BF523624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523624 /DB_XREF=gi:11631591 /DB_XREF=UI-R-C1-lc-d-10-0-UI.r1 /CLONE=UI-R-C1-lc-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.63772.1 /TIER=ConsEnd /STK=1 /UG=Rn.63772 /UG_TITLE=ESTs BF523624 inhibitor of growth family, member 2 Ing2 290744 NM_001106083 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0016580 // Sin3 complex // inferred from electronic annotation /// 0016580 // Sin3 complex // not recorded /// 0016602 // CCAAT-binding factor complex // inferred from electronic annotation /// 0016602 // CCAAT-binding factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0032403 // protein complex binding // inferred from electronic annotation /// 0032403 // protein complex binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1386132_at AI227648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227648 /DB_XREF=gi:3811535 /DB_XREF=EST224343 /CLONE=RBRCJ71 /FEA=EST /CNT=2 /TID=Rn.34059.1 /TIER=ConsEnd /STK=0 /UG=Rn.34059 /UG_TITLE=ESTs AI227648 similar to hypothetical protein MGC35130 RGD1565480 500511 XR_007925 /// XR_086261 1386134_at AA850524 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850524 /DB_XREF=gi:2938064 /DB_XREF=EST193291 /CLONE=ROVAG70 /FEA=EST /CNT=2 /TID=Rn.4103.2 /TIER=ConsEnd /STK=1 /UG=Rn.4103 /UG_TITLE=ESTs, Highly similar to I49257 NF2d9 - mouse (M.musculus) AA850524 Upstream binding protein 1 (LBP-1a) Ubp1 301038 NM_001191819 /// XM_001076644 /// XM_002727141 /// XM_002729971 /// XM_238562 0001525 // angiogenesis // not recorded 1386135_at BI850153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI850153 /DB_XREF=gi:16003640 /DB_XREF=imageqc_10_2000sma468bdff41.x1 /CLONE=IMAGE:4197650 /FEA=EST /CNT=1 /TID=Rn.81050.1 /TIER=ConsEnd /STK=1 /UG=Rn.81050 /UG_TITLE=EST BI850153 1386138_at AI172174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172174 /DB_XREF=gi:3712214 /DB_XREF=EST218169 /CLONE=RMUBV84 /FEA=EST /CNT=1 /TID=Rn.19093.3 /TIER=ConsEnd /STK=0 /UG=Rn.19093 /UG_TITLE=ESTs AI172174 RAS-like, estrogen-regulated, growth-inhibitor Rerg 502916 XM_001072746 /// XM_578417 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009725 // response to hormone stimulus // not recorded /// 0030308 // negative regulation of cell growth // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1386140_at AI235950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235950 /DB_XREF=gi:3829456 /DB_XREF=EST232512 /CLONE=ROVCZ23 /FEA=EST /CNT=1 /TID=Rn.25373.3 /TIER=ConsEnd /STK=0 /UG=Rn.25373 /UG_TITLE=ESTs AI235950 1386141_at AI176516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176516 /DB_XREF=gi:3727154 /DB_XREF=EST220102 /CLONE=ROVBS90 /FEA=EST /CNT=1 /TID=Rn.18754.2 /TIER=ConsEnd /STK=0 /UG=Rn.18754 /UG_TITLE=ESTs AI176516 zinc finger, CW-type with PWWP domain 1 Zcwpw1 304368 XM_001076305 /// XM_222057 0008270 // zinc ion binding // inferred from electronic annotation 1386142_at AI102050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102050 /DB_XREF=gi:3706885 /DB_XREF=EST211339 /CLONE=RBRBY34 /FEA=EST /CNT=1 /TID=Rn.33741.1 /TIER=ConsEnd /STK=1 /UG=Rn.33741 /UG_TITLE=EST AI102050 1386143_at AA799997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799997 /DB_XREF=gi:2862952 /DB_XREF=EST189494 /CLONE=RHEAI08 /FEA=EST /CNT=1 /TID=Rn.6266.1 /TIER=ConsEnd /STK=1 /UG=Rn.6266 /UG_TITLE=EST AA799997 hypothetical LOC305552 RGD1309501 305552 NM_001127537 1386145_at AI236118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236118 /DB_XREF=gi:3829624 /DB_XREF=EST232680 /CLONE=ROVDB63 /FEA=EST /CNT=1 /TID=Rn.37802.1 /TIER=ConsEnd /STK=1 /UG=Rn.37802 /UG_TITLE=EST AI236118 1386148_at AI409284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409284 /DB_XREF=gi:4252788 /DB_XREF=EST237576 /CLONE=RKIDL41 /FEA=EST /CNT=1 /TID=Rn.43436.1 /TIER=ConsEnd /STK=0 /UG=Rn.43436 /UG_TITLE=EST AI409284 1386149_at AI175469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175469 /DB_XREF=gi:3726107 /DB_XREF=EST219019 /CLONE=RMUCN85 /FEA=EST /CNT=1 /TID=Rn.42743.1 /TIER=ConsEnd /STK=1 /UG=Rn.42743 /UG_TITLE=EST, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) AI175469 1386152_at AA943744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943744 /DB_XREF=gi:3103660 /DB_XREF=EST199243 /CLONE=RBRAP13 /FEA=EST /CNT=1 /TID=Rn.7629.1 /TIER=ConsEnd /STK=1 /UG=Rn.7629 /UG_TITLE=EST AA943744 1386154_at AI639161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639161 /DB_XREF=gi:4700195 /DB_XREF=rx01162s /CLONE=rx01162 /FEA=EST /CNT=1 /TID=Rn.43059.1 /TIER=ConsEnd /STK=1 /UG=Rn.43059 /UG_TITLE=EST AI639161 family with sequence similarity 135, member A Fam135a 367235 NM_001134597 1386156_at AI639451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639451 /DB_XREF=gi:4700485 /DB_XREF=rx03912s /CLONE=rx03912 /FEA=EST /CNT=1 /TID=Rn.43703.1 /TIER=ConsEnd /STK=1 /UG=Rn.43703 /UG_TITLE=EST AI639451 1386158_at AI639147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639147 /DB_XREF=gi:4700181 /DB_XREF=rx02462s /CLONE=rx02462 /FEA=EST /CNT=1 /TID=Rn.43058.1 /TIER=ConsEnd /STK=1 /UG=Rn.43058 /UG_TITLE=EST AI639147 1386160_at AI639401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639401 /DB_XREF=gi:4700435 /DB_XREF=rx00654s /CLONE=rx00654 /FEA=EST /CNT=1 /TID=Rn.42981.1 /TIER=ConsEnd /STK=1 /UG=Rn.42981 /UG_TITLE=ESTs, Weakly similar to A45973 trichohyalin (H.sapiens) AI639401 Trichohyalin Tchh 310588 XM_001054694 /// XM_227373 0045109 // intermediate filament organization // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0030674 // protein binding, bridging // not recorded 1386162_at AI009944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009944 /DB_XREF=gi:3223776 /DB_XREF=EST204395 /CLONE=RLUBR17 /FEA=EST /CNT=1 /TID=Rn.17505.1 /TIER=ConsEnd /STK=1 /UG=Rn.17505 /UG_TITLE=EST AI009944 TXK tyrosine kinase Txk 305311 NM_001024255 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1386164_at AI170800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170800 /DB_XREF=gi:3710840 /DB_XREF=EST216739 /CLONE=RMUBB66 /FEA=EST /CNT=1 /TID=Rn.18698.2 /TIER=ConsEnd /STK=0 /UG=Rn.18698 /UG_TITLE=ESTs AI170800 Cell division cycle 2-like 5 (cholinesterase-related cell division controller) Cdc2l5 306998 XM_001053539 /// XM_001053609 /// XM_225404 0006468 // protein phosphorylation // inferred from electronic annotation 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1386166_at AA892881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892881 /DB_XREF=gi:4132225 /DB_XREF=EST196684 /CLONE=RKIAY45 /FEA=EST /CNT=1 /TID=Rn.14800.1 /TIER=ConsEnd /STK=1 /UG=Rn.14800 /UG_TITLE=EST AA892881 ATPase, H+ transporting, lysosomal V1 subunit G3 Atp6v1g3 289407 NM_001105991 0006200 // ATP catabolic process // not recorded /// 0015992 // proton transport // inferred from electronic annotation /// 0015992 // proton transport // not recorded /// 0034220 // ion transmembrane transport // not recorded 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016471 // vacuolar proton-transporting V-type ATPase complex // inferred from electronic annotation 0008553 // hydrogen-exporting ATPase activity, phosphorylative mechanism // not recorded /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0051117 // ATPase binding // not recorded 1386168_at AI639440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639440 /DB_XREF=gi:4700474 /DB_XREF=rx04913s /CLONE=rx04913 /FEA=EST /CNT=1 /TID=Rn.43325.1 /TIER=ConsEnd /STK=1 /UG=Rn.43325 /UG_TITLE=EST AI639440 1386170_at AI234526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234526 /DB_XREF=gi:3828032 /DB_XREF=EST231088 /CLONE=RLUDA81 /FEA=EST /CNT=1 /TID=Rn.25250.1 /TIER=ConsEnd /STK=1 /UG=Rn.25250 /UG_TITLE=EST AI234526 1386172_at AI639019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639019 /DB_XREF=gi:4700053 /DB_XREF=rx01107s /CLONE=rx01107 /FEA=EST /CNT=1 /TID=Rn.44140.1 /TIER=ConsEnd /STK=1 /UG=Rn.44140 /UG_TITLE=EST AI639019 1386174_at AI235918 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235918 /DB_XREF=gi:4136136 /DB_XREF=EST232480 /CLONE=ROVCY60 /FEA=EST /CNT=1 /TID=Rn.25370.1 /TIER=ConsEnd /STK=1 /UG=Rn.25370 /UG_TITLE=EST AI235918 1386176_at AA892868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892868 /DB_XREF=gi:3019747 /DB_XREF=EST196671 /CLONE=RKIAY30 /FEA=EST /CNT=1 /TID=Rn.14797.1 /TIER=ConsEnd /STK=1 /UG=Rn.14797 /UG_TITLE=EST AA892868 family with sequence similarity 160, member B2 Fam160b2 306015 NM_001170474 1386178_at AA799690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799690 /DB_XREF=gi:4131428 /DB_XREF=EST189187 /CLONE=RHEAE10 /FEA=EST /CNT=1 /TID=Rn.6222.1 /TIER=ConsEnd /STK=1 /UG=Rn.6222 /UG_TITLE=EST AA799690 1386180_at AI178132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178132 /DB_XREF=gi:3728770 /DB_XREF=EST221795 /CLONE=RPLCM50 /FEA=EST /CNT=1 /TID=Rn.3354.2 /TIER=ConsEnd /STK=0 /UG=Rn.3354 /UG_TITLE=ESTs AI178132 Transmembrane protein 179B Tmem179b 690263 NM_001109572 1386181_at AI639056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639056 /DB_XREF=gi:4700090 /DB_XREF=rx04706s /CLONE=rx04706 /FEA=EST /CNT=1 /TID=Rn.43049.1 /TIER=ConsEnd /STK=1 /UG=Rn.43049 /UG_TITLE=EST AI639056 1386183_at AI172334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172334 /DB_XREF=gi:3712374 /DB_XREF=EST218336 /CLONE=RMUBX93 /FEA=EST /CNT=1 /TID=Rn.22287.2 /TIER=ConsEnd /STK=1 /UG=Rn.22287 /UG_TITLE=ESTs AI172334 1386185_at H31802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31802 /DB_XREF=gi:977219 /DB_XREF=EST106213 /CLONE=RPCAY40 /FEA=EST /CNT=1 /TID=Rn.42138.1 /TIER=ConsEnd /STK=1 /UG=Rn.42138 /UG_TITLE=EST, Moderately similar to S12207 hypothetical protein (M.musculus) H31802 1386186_s_at H31802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31802 /DB_XREF=gi:977219 /DB_XREF=EST106213 /CLONE=RPCAY40 /FEA=EST /CNT=1 /TID=Rn.42138.1 /TIER=ConsEnd /STK=1 /UG=Rn.42138 /UG_TITLE=EST, Moderately similar to S12207 hypothetical protein (M.musculus) H31802 1386188_s_at H31802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31802 /DB_XREF=gi:977219 /DB_XREF=EST106213 /CLONE=RPCAY40 /FEA=EST /CNT=1 /TID=Rn.42138.1 /TIER=ConsEnd /STK=0 /UG=Rn.42138 /UG_TITLE=EST, Moderately similar to S12207 hypothetical protein (M.musculus) H31802 1386189_at AI639145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639145 /DB_XREF=gi:4700179 /DB_XREF=rx02082s /CLONE=rx02082 /FEA=EST /CNT=1 /TID=Rn.44146.1 /TIER=ConsEnd /STK=1 /UG=Rn.44146 /UG_TITLE=EST AI639145 1386191_a_at AI231089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231089 /DB_XREF=gi:3814969 /DB_XREF=EST227777 /CLONE=REMDF19 /FEA=EST /CNT=1 /TID=Rn.48641.2 /TIER=ConsEnd /STK=1 /UG=Rn.48641 /UG_TITLE=ESTs AI231089 lipoma HMGIC fusion partner-like 2 Lhfpl2 294643 NM_001106402 1386194_at AI177381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177381 /DB_XREF=gi:3728019 /DB_XREF=EST221001 /CLONE=RPLBY39 /FEA=EST /CNT=1 /TID=Rn.16254.3 /TIER=ConsEnd /STK=0 /UG=Rn.16254 /UG_TITLE=ESTs AI177381 Family with sequence similarity 132, member A Fam132a 313774 NM_001108000 1386195_x_at AI176775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176775 /DB_XREF=gi:3727413 /DB_XREF=EST220370 /CLONE=ROVBW64 /FEA=EST /CNT=1 /TID=Rn.227.2 /TIER=ConsEnd /STK=1 /UG=Rn.227 /UG_TITLE=ESTs AI176775 1386200_at AA799883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799883 /DB_XREF=gi:2862838 /DB_XREF=EST189380 /CLONE=RHEAG50 /FEA=EST /CNT=1 /TID=Rn.6252.1 /TIER=ConsEnd /STK=1 /UG=Rn.6252 /UG_TITLE=EST AA799883 1386203_at AA851194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851194 /DB_XREF=gi:2938734 /DB_XREF=EST193962 /CLONE=RPLAD67 /FEA=EST /CNT=1 /TID=Rn.6712.1 /TIER=ConsEnd /STK=1 /UG=Rn.6712 /UG_TITLE=EST AA851194 1386205_at AA956782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956782 /DB_XREF=gi:4239256 /DB_XREF=UI-R-E1-fr-g-06-0-UI.s1 /CLONE=UI-R-E1-fr-g-06-0-UI /FEA=EST /CNT=1 /TID=Rn.8174.3 /TIER=ConsEnd /STK=1 /UG=Rn.8174 /UG_TITLE=ESTs AA956782 feline leukemia virus subgroup C cellular receptor family, member 2 Flvcr2 314323 NM_199109 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0015232 // heme transporter activity // inferred from sequence or structural similarity /// 0020037 // heme binding // inferred from sequence or structural similarity 1386208_at AI013238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013238 /DB_XREF=gi:4133818 /DB_XREF=EST207913 /CLONE=RSPBI50 /FEA=EST /CNT=1 /TID=Rn.17978.1 /TIER=ConsEnd /STK=1 /UG=Rn.17978 /UG_TITLE=EST AI013238 1386212_at AI639523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639523 /DB_XREF=gi:4700557 /DB_XREF=rx01130s /CLONE=rx01130 /FEA=EST /CNT=1 /TID=Rn.44157.1 /TIER=ConsEnd /STK=1 /UG=Rn.44157 /UG_TITLE=EST, Weakly similar to SPCA_HUMAN SPECTRIN ALPHA CHAIN, ERYTHROCYTE (H.sapiens) AI639523 spectrin, alpha, erythrocytic 1 (elliptocytosis 2) Spta1 289257 NM_001011908 0006779 // porphyrin biosynthetic process // not recorded /// 0030097 // hemopoiesis // not recorded 0005829 // cytosol // not recorded /// 0014731 // spectrin-associated cytoskeleton // not recorded /// 0016020 // membrane // not recorded /// 0030863 // cortical cytoskeleton // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1386215_at AI101566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101566 /DB_XREF=gi:3706449 /DB_XREF=EST210855 /CLONE=RBRBS35 /FEA=EST /CNT=1 /TID=Rn.42465.1 /TIER=ConsEnd /STK=1 /UG=Rn.42465 /UG_TITLE=EST AI101566 geranylgeranyl diphosphate synthase 1 Ggps1 291211 NM_001007626 0006720 // isoprenoid metabolic process // not recorded /// 0006720 // isoprenoid metabolic process // inferred from sequence or structural similarity /// 0006720 // isoprenoid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation 0005625 // soluble fraction // not recorded /// 0005625 // soluble fraction // inferred from sequence or structural similarity /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004161 // dimethylallyltranstransferase activity // inferred from electronic annotation /// 0004311 // farnesyltranstransferase activity // not recorded /// 0004311 // farnesyltranstransferase activity // inferred from sequence or structural similarity /// 0004311 // farnesyltranstransferase activity // inferred from electronic annotation /// 0004337 // geranyltranstransferase activity // inferred from electronic annotation /// 0004337 // geranyltranstransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386217_at AI639048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639048 /DB_XREF=gi:4700082 /DB_XREF=rx01186s /CLONE=rx01186 /FEA=EST /CNT=1 /TID=Rn.43310.1 /TIER=ConsEnd /STK=1 /UG=Rn.43310 /UG_TITLE=EST, Moderately similar to T00057 hypothetical protein KIAA0423 (H.sapiens) AI639048 family with sequence similarity 179, member B Fam179b 314169 XM_002726743 /// XM_234236 0005488 // binding // inferred from electronic annotation 1386218_at AI639301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639301 /DB_XREF=gi:4700335 /DB_XREF=rx03817s /CLONE=rx03817 /FEA=EST /CNT=1 /TID=Rn.43066.1 /TIER=ConsEnd /STK=1 /UG=Rn.43066 /UG_TITLE=EST AI639301 1386220_at AA892761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892761 /DB_XREF=gi:3019640 /DB_XREF=EST196564 /CLONE=RKIAW91 /FEA=EST /CNT=1 /TID=Rn.14790.1 /TIER=ConsEnd /STK=1 /UG=Rn.14790 /UG_TITLE=EST AA892761 1386224_at H33651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33651 /DB_XREF=gi:979068 /DB_XREF=EST109846 /CLONE=RPNAV67 /FEA=EST /CNT=1 /TID=Rn.14654.1 /TIER=ConsEnd /STK=1 /UG=Rn.14654 /UG_TITLE=EST H33651 1386226_at AA893682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893682 /DB_XREF=gi:4132320 /DB_XREF=EST197485 /CLONE=RPLAI39 /FEA=EST /CNT=1 /TID=Rn.2813.2 /TIER=ConsEnd /STK=0 /UG=Rn.2813 /UG_TITLE=ESTs AA893682 1386228_at AA998453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998453 /DB_XREF=gi:4289965 /DB_XREF=UI-R-C0-ib-g-02-0-UI.s1 /CLONE=UI-R-C0-ib-g-02-0-UI /FEA=EST /CNT=1 /TID=Rn.12855.3 /TIER=ConsEnd /STK=1 /UG=Rn.12855 /UG_TITLE=ESTs AA998453 1386229_at AI101392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101392 /DB_XREF=gi:3706299 /DB_XREF=EST210681 /CLONE=RBRBN77 /FEA=EST /CNT=1 /TID=Rn.28069.1 /TIER=ConsEnd /STK=0 /UG=Rn.28069 /UG_TITLE=EST, Highly similar to G01227 recepin (H.sapiens) AI101392 corepressor interacting with RBPJ, 1 Cir1 362149 NM_001007799 0006350 // transcription // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation 0005515 // protein binding // not recorded 1386230_at AI639362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639362 /DB_XREF=gi:4700396 /DB_XREF=rx03215s /CLONE=rx03215 /FEA=EST /CNT=1 /TID=Rn.44155.1 /TIER=ConsEnd /STK=1 /UG=Rn.44155 /UG_TITLE=EST AI639362 1386231_at AI639105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639105 /DB_XREF=gi:4700139 /DB_XREF=rx04064s /CLONE=rx04064 /FEA=EST /CNT=1 /TID=Rn.43053.1 /TIER=ConsEnd /STK=1 /UG=Rn.43053 /UG_TITLE=EST AI639105 similar to RIKEN cDNA 9530003J23 RGD1306474 362881 NM_001108746 0008152 // metabolic process // inferred from electronic annotation /// 0016998 // cell wall macromolecule catabolic process // inferred from electronic annotation 0003796 // lysozyme activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation 1386234_at AA893366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893366 /DB_XREF=gi:3020245 /DB_XREF=EST197169 /CLONE=RKIBF56 /FEA=EST /CNT=1 /TID=Rn.13499.1 /TIER=ConsEnd /STK=1 /UG=Rn.13499 /UG_TITLE=EST AA893366 1386237_at AI639466 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639466 /DB_XREF=gi:4700500 /DB_XREF=rx01492s /CLONE=rx01492 /FEA=EST /CNT=1 /TID=Rn.43922.1 /TIER=ConsEnd /STK=1 /UG=Rn.43922 /UG_TITLE=EST AI639466 1386239_at AI639210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639210 /DB_XREF=gi:4700244 /DB_XREF=rx00540s /CLONE=rx00540 /FEA=EST /CNT=1 /TID=Rn.43064.1 /TIER=ConsEnd /STK=1 /UG=Rn.43064 /UG_TITLE=EST AI639210 DMRT-like family A1 Dmrta1 313352 NM_001107945 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007548 // sex differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1386241_at BG153317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG153317 /DB_XREF=gi:12665347 /DB_XREF=nag12c06.x1 /CLONE=IMAGE:4175987 /FEA=EST /CNT=1 /TID=Rn.65623.1 /TIER=ConsEnd /STK=1 /UG=Rn.65623 /UG_TITLE=EST BG153317 1386242_at AI179722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179722 /DB_XREF=gi:3730360 /DB_XREF=EST223449 /CLONE=RSPCK82 /FEA=EST /CNT=1 /TID=Rn.1098.3 /TIER=ConsEnd /STK=0 /UG=Rn.1098 /UG_TITLE=ESTs AI179722 1386245_at BG153343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG153343 /DB_XREF=gi:12665373 /DB_XREF=nag12h08.x1 /CLONE=IMAGE:4176231 /FEA=EST /CNT=1 /TID=Rn.65632.1 /TIER=ConsEnd /STK=1 /UG=Rn.65632 /UG_TITLE=EST BG153343 1386247_at AA859100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859100 /DB_XREF=gi:4229368 /DB_XREF=UI-R-A0-ac-b-04-0-UI.s2 /CLONE=UI-R-A0-ac-b-04-0-UI /FEA=EST /CNT=1 /TID=Rn.16962.1 /TIER=ConsEnd /STK=1 /UG=Rn.16962 /UG_TITLE=EST AA859100 sorting nexin 25 Snx25 306471 XM_001061047 /// XM_224863 0007154 // cell communication // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1386248_at BG153352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG153352 /DB_XREF=gi:12665382 /DB_XREF=nag13a10.x1 /CLONE=IMAGE:4175922 /FEA=EST /CNT=1 /TID=Rn.65635.1 /TIER=ConsEnd /STK=1 /UG=Rn.65635 /UG_TITLE=EST BG153352 1386250_at BG153370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG153370 /DB_XREF=gi:12665400 /DB_XREF=nag13e10.x1 /CLONE=IMAGE:4176114 /FEA=EST /CNT=1 /TID=Rn.65643.1 /TIER=ConsEnd /STK=1 /UG=Rn.65643 /UG_TITLE=EST, Weakly similar to SNXC_MOUSE SORTING NEXIN 12 (SDP8 PROTEIN) (M.musculus) BG153370 Sorting nexin 12 Snx12 363478 NM_001108817 0007154 // cell communication // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1386252_at BE349825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE349825 /DB_XREF=gi:9261678 /DB_XREF=hq43f04.x1 /CLONE=IMAGE:3122143 /FEA=EST /CNT=1 /TID=Rn.54041.1 /TIER=ConsEnd /STK=1 /UG=Rn.54041 /UG_TITLE=EST BE349825 1386253_at AA800290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800290 /DB_XREF=gi:2863245 /DB_XREF=EST189787 /CLONE=RHEAN45 /FEA=EST /CNT=1 /TID=Rn.6309.2 /TIER=ConsEnd /STK=0 /UG=Rn.6309 /UG_TITLE=ESTs AA800290 Mediator complex subunit 4 Med4 306030 NM_001024256 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0030518 // steroid hormone receptor signaling pathway // not recorded /// 0030518 // steroid hormone receptor signaling pathway // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016592 // mediator complex // inferred from electronic annotation /// 0016592 // mediator complex // not recorded 0003712 // transcription cofactor activity // inferred from electronic annotation /// 0003712 // transcription cofactor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation /// 0016455 // RNA polymerase II transcription mediator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0046966 // thyroid hormone receptor binding // inferred from electronic annotation /// 0046966 // thyroid hormone receptor binding // not recorded 1386254_at AI231451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231451 /DB_XREF=gi:3815331 /DB_XREF=EST228139 /CLONE=REMDK32 /FEA=EST /CNT=1 /TID=Rn.12917.2 /TIER=ConsEnd /STK=1 /UG=Rn.12917 /UG_TITLE=ESTs AI231451 1386256_at AA893994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893994 /DB_XREF=gi:3020873 /DB_XREF=EST197797 /CLONE=RPLAO36 /FEA=EST /CNT=1 /TID=Rn.14843.1 /TIER=ConsEnd /STK=1 /UG=Rn.14843 /UG_TITLE=EST AA893994 1386257_at AA858641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858641 /DB_XREF=gi:4229972 /DB_XREF=UI-R-E0-bq-d-09-0-UI.s1 /CLONE=UI-R-E0-bq-d-09-0-UI /FEA=EST /CNT=1 /TID=Rn.16559.2 /TIER=ConsEnd /STK=0 /UG=Rn.16559 /UG_TITLE=ESTs AA858641 1386258_at AA945099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945099 /DB_XREF=gi:3105015 /DB_XREF=EST200598 /CLONE=RLIAG48 /FEA=EST /CNT=1 /TID=Rn.17587.3 /TIER=ConsEnd /STK=0 /UG=Rn.17587 /UG_TITLE=ESTs, Moderately similar to T46396 hypothetical protein DKFZp434I1820.1 (H.sapiens) AA945099 RNA-binding region (RNP1, RRM) containing 3 Rnpc3 691538 NM_001100810 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005689 // U12-type spliceosomal complex // inferred from electronic annotation /// 0005689 // U12-type spliceosomal complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1386259_a_at AI104152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104152 /DB_XREF=gi:3708555 /DB_XREF=EST213441 /CLONE=RHEBX88 /FEA=EST /CNT=1 /TID=Rn.20168.2 /TIER=ConsEnd /STK=1 /UG=Rn.20168 /UG_TITLE=ESTs AI104152 similar to RIKEN cDNA 1110008J03 RGD1306772 288683 NM_001044226 1386261_x_at AI406385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406385 /DB_XREF=gi:4249889 /DB_XREF=EST234671 /CLONE=RBRDP27 /FEA=EST /CNT=1 /TID=Rn.22360.2 /TIER=ConsEnd /STK=1 /UG=Rn.22360 /UG_TITLE=ESTs AI406385 caveolin 2 /// caveolin 2-like Cav2 /// LOC100362824 100362824 /// 363425 NM_131914 /// XM_002730163 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0001937 // negative regulation of endothelial cell proliferation // inferred from sequence or structural similarity /// 0001937 // negative regulation of endothelial cell proliferation // inferred from electronic annotation /// 0006906 // vesicle fusion // not recorded /// 0006906 // vesicle fusion // inferred from sequence or structural similarity /// 0006906 // vesicle fusion // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0007005 // mitochondrion organization // inferred from sequence or structural similarity /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007029 // endoplasmic reticulum organization // not recorded /// 0007029 // endoplasmic reticulum organization // inferred from sequence or structural similarity /// 0007029 // endoplasmic reticulum organization // inferred from electronic annotation /// 0007088 // regulation of mitosis // inferred from electronic annotation /// 0007088 // regulation of mitosis // not recorded /// 0007268 // synaptic transmission // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0016050 // vesicle organization // not recorded /// 0016050 // vesicle organization // inferred from electronic annotation /// 0048278 // vesicle docking // not recorded /// 0048278 // vesicle docking // inferred from sequence or structural similarity /// 0048278 // vesicle docking // inferred from electronic annotation /// 0048741 // skeletal muscle fiber development // not recorded /// 0048741 // skeletal muscle fiber development // inferred from sequence or structural similarity /// 0048741 // skeletal muscle fiber development // inferred from electronic annotation /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0051259 // protein oligomerization // not recorded /// 0060161 // positive regulation of dopamine receptor signaling pathway // not recorded /// 0060161 // positive regulation of dopamine receptor signaling pathway // inferred from sequence or structural similarity /// 0060161 // positive regulation of dopamine receptor signaling pathway // inferred from electronic annotation /// 0070836 // caveola assembly // not recorded /// 0070836 // caveola assembly // inferred from sequence or structural similarity /// 0070836 // caveola assembly // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005901 // caveola // inferred from direct assay /// 0005901 // caveola // not recorded /// 0005901 // caveola // inferred from sequence or structural similarity /// 0005901 // caveola // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from electronic annotation /// 0030133 // transport vesicle // not recorded /// 0031234 // extrinsic to internal side of plasma membrane // not recorded /// 0031234 // extrinsic to internal side of plasma membrane // inferred from sequence or structural similarity /// 0031234 // extrinsic to internal side of plasma membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000149 // SNARE binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019905 // syntaxin binding // inferred from direct assay /// 0031748 // D1 dopamine receptor binding // not recorded /// 0031748 // D1 dopamine receptor binding // inferred from sequence or structural similarity /// 0031748 // D1 dopamine receptor binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0051219 // phosphoprotein binding // inferred from physical interaction 1386263_at AI227677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227677 /DB_XREF=gi:3811564 /DB_XREF=EST224372 /CLONE=RBRCK15 /FEA=EST /CNT=1 /TID=Rn.22671.3 /TIER=ConsEnd /STK=1 /UG=Rn.22671 /UG_TITLE=ESTs AI227677 neural precursor cell expressed, developmentally down-regulated 4 Nedd4 25489 NM_012986 0006464 // protein modification process // inferred from electronic annotation /// 0006622 // protein targeting to lysosome // not recorded /// 0006955 // immune response // inferred from expression pattern /// 0007041 // lysosomal transport // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0010766 // negative regulation of sodium ion transport // not recorded /// 0010768 // negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage // not recorded /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0019089 // transmission of virus // not recorded /// 0030948 // negative regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0030948 // negative regulation of vascular endothelial growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0031175 // neuron projection development // not recorded /// 0031623 // receptor internalization // not recorded /// 0032801 // receptor catabolic process // not recorded /// 0034644 // cellular response to UV // not recorded /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0042921 // glucocorticoid receptor signaling pathway // not recorded /// 0044111 // development involved in symbiotic interaction // not recorded /// 0045732 // positive regulation of protein catabolic process // not recorded /// 0046824 // positive regulation of nucleocytoplasmic transport // not recorded /// 0048814 // regulation of dendrite morphogenesis // inferred from direct assay /// 0050847 // progesterone receptor signaling pathway // not recorded /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay 0000151 // ubiquitin ligase complex // not recorded /// 0000785 // chromatin // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005902 // microvillus // inferred from direct assay /// 0005938 // cell cortex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from direct assay /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019871 // sodium channel inhibitor activity // not recorded /// 0019904 // protein domain specific binding // not recorded /// 0031698 // beta-2 adrenergic receptor binding // not recorded /// 0043130 // ubiquitin binding // not recorded /// 0050815 // phosphoserine binding // not recorded /// 0050816 // phosphothreonine binding // not recorded /// 0070063 // RNA polymerase binding // not recorded /// 0070064 // proline-rich region binding // not recorded 1386265_at AI177183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177183 /DB_XREF=gi:4134960 /DB_XREF=EST220790 /CLONE=ROVCB86 /FEA=EST /CNT=1 /TID=Rn.23259.2 /TIER=ConsEnd /STK=0 /UG=Rn.23259 /UG_TITLE=ESTs AI177183 1386266_at AI227948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227948 /DB_XREF=gi:3811835 /DB_XREF=EST224643 /CLONE=RBRCN94 /FEA=EST /CNT=1 /TID=Rn.24278.1 /TIER=ConsEnd /STK=1 /UG=Rn.24278 /UG_TITLE=EST AI227948 1386268_at AI177589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177589 /DB_XREF=gi:3728227 /DB_XREF=EST221225 /CLONE=RPLCC09 /FEA=EST /CNT=1 /TID=Rn.25122.3 /TIER=ConsEnd /STK=1 /UG=Rn.25122 /UG_TITLE=ESTs, Highly similar to T09123 hybrid receptor SorLA precursor - mouse (M.musculus) AI177589 sortilin-related receptor, LDLR class A repeats-containing Sorl1 300652 NM_053519 /// XM_001065506 /// XM_217115 0008283 // cell proliferation // inferred from expression pattern /// 0016477 // cell migration // inferred from mutant phenotype 0005771 // multivesicular body // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay 0030169 // low-density lipoprotein binding // not recorded 1386269_x_at AI177589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177589 /DB_XREF=gi:3728227 /DB_XREF=EST221225 /CLONE=RPLCC09 /FEA=EST /CNT=1 /TID=Rn.25122.3 /TIER=ConsEnd /STK=1 /UG=Rn.25122 /UG_TITLE=ESTs, Highly similar to T09123 hybrid receptor SorLA precursor - mouse (M.musculus) AI177589 sortilin-related receptor, LDLR class A repeats-containing Sorl1 300652 NM_053519 /// XM_001065506 /// XM_217115 0008283 // cell proliferation // inferred from expression pattern /// 0016477 // cell migration // inferred from mutant phenotype 0005771 // multivesicular body // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay 0030169 // low-density lipoprotein binding // not recorded 1386270_at AI237456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237456 /DB_XREF=gi:3830962 /DB_XREF=EST234018 /CLONE=RPLCZ34 /FEA=EST /CNT=1 /TID=Rn.25161.2 /TIER=ConsEnd /STK=1 /UG=Rn.25161 /UG_TITLE=ESTs, Weakly similar to A36747 neutrophil cytochrome b, 22K polypeptide homolog - mouse (M.musculus) AI237456 1386272_at AI235835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235835 /DB_XREF=gi:3829341 /DB_XREF=EST232397 /CLONE=ROVCX61 /FEA=EST /CNT=1 /TID=Rn.25361.1 /TIER=ConsEnd /STK=1 /UG=Rn.25361 /UG_TITLE=EST AI235835 1386274_at AI169925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169925 /DB_XREF=gi:3709965 /DB_XREF=EST215834 /CLONE=RLIAX14 /FEA=EST /CNT=1 /TID=Rn.28363.1 /TIER=ConsEnd /STK=1 /UG=Rn.28363 /UG_TITLE=EST, Weakly similar to NPT1 RAT RENAL SODIUM-DEPENDENT PHOSPHATE TRANSPORT PROTEIN 1 (R.norvegicus) AI169925 solute carrier family 17 (sodium phosphate), member 2 Slc17a2 306950 NM_001107353 0055085 // transmembrane transport // inferred from electronic annotation 1386275_at AI170541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170541 /DB_XREF=gi:3710581 /DB_XREF=EST216469 /CLONE=RLUCQ06 /FEA=EST /CNT=1 /TID=Rn.28420.1 /TIER=ConsEnd /STK=1 /UG=Rn.28420 /UG_TITLE=EST AI170541 1386277_at AI177396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177396 /DB_XREF=gi:3728034 /DB_XREF=EST221016 /CLONE=RPLBY58 /FEA=EST /CNT=1 /TID=Rn.29098.1 /TIER=ConsEnd /STK=1 /UG=Rn.29098 /UG_TITLE=EST, Weakly similar to I63168 gene Ube1x protein - rat (R.norvegicus) AI177396 ubiquitin-like modifier activating enzyme 7 Uba7 301000 NM_001106856 0006464 // protein modification process // inferred from electronic annotation /// 0006464 // protein modification process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0019941 // modification-dependent protein catabolic process // not recorded /// 0032020 // ISG15-protein conjugation // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008641 // small protein activating enzyme activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019782 // ISG15 activating enzyme activity // not recorded 1386279_at AI235655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235655 /DB_XREF=gi:3829161 /DB_XREF=EST232217 /CLONE=ROVCU65 /FEA=EST /CNT=1 /TID=Rn.31698.2 /TIER=ConsEnd /STK=0 /UG=Rn.31698 /UG_TITLE=ESTs AI235655 StAR-related lipid transfer (START) domain containing 4 Stard4 291699 NM_001106159 1386280_at AA892888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892888 /DB_XREF=gi:4132226 /DB_XREF=EST196691 /CLONE=RKIAY54 /FEA=EST /CNT=1 /TID=Rn.32292.1 /TIER=ConsEnd /STK=1 /UG=Rn.32292 /UG_TITLE=EST AA892888 methyltransferase like 7B Mettl7b 366792 NM_001024276 0008152 // metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005811 // lipid particle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1386282_x_at AA964809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964809 /DB_XREF=gi:4279683 /DB_XREF=UI-R-C0-gx-a-04-0-UI.s1 /CLONE=UI-R-C0-gx-a-04-0-UI /FEA=EST /CNT=1 /TID=Rn.36146.2 /TIER=ConsEnd /STK=0 /UG=Rn.36146 /UG_TITLE=ESTs AA964809 hypothetical gene supported by NM_138833 /// SNF related kinase LOC367880 /// Snrk 170837 /// 367880 NM_138833 /// XR_085952 /// XR_086377 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0043523 // regulation of neuron apoptosis // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386286_at AI639322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639322 /DB_XREF=gi:4700356 /DB_XREF=rx02656s /CLONE=rx02656 /FEA=EST /CNT=1 /TID=Rn.43067.1 /TIER=ConsEnd /STK=1 /UG=Rn.43067 /UG_TITLE=EST AI639322 1386287_at AI407974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407974 /DB_XREF=gi:4251478 /DB_XREF=EST236264 /CLONE=RPLDJ22 /FEA=EST /CNT=1 /TID=Rn.43125.1 /TIER=ConsEnd /STK=1 /UG=Rn.43125 /UG_TITLE=EST AI407974 SLAIN motif family, member 2 Slain2 305310 NM_001107214 1386289_at AI638973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI638973 /DB_XREF=gi:4700007 /DB_XREF=rx05189s /CLONE=rx05189 /FEA=EST /CNT=1 /TID=Rn.43190.1 /TIER=ConsEnd /STK=1 /UG=Rn.43190 /UG_TITLE=EST AI638973 1386292_at AI639358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639358 /DB_XREF=gi:4700392 /DB_XREF=rx02795s /CLONE=rx02795 /FEA=EST /CNT=1 /TID=Rn.43203.1 /TIER=ConsEnd /STK=1 /UG=Rn.43203 /UG_TITLE=EST AI639358 1386293_at AA892593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892593 /DB_XREF=gi:3019472 /DB_XREF=EST196396 /CLONE=RKIAU35 /FEA=EST /CNT=1 /TID=Rn.43217.1 /TIER=ConsEnd /STK=1 /UG=Rn.43217 /UG_TITLE=EST, Weakly similar to S12207 hypothetical protein (M.musculus) AA892593 1386295_at AI639051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639051 /DB_XREF=gi:4700085 /DB_XREF=rx01486s /CLONE=rx01486 /FEA=EST /CNT=1 /TID=Rn.43501.1 /TIER=ConsEnd /STK=1 /UG=Rn.43501 /UG_TITLE=EST AI639051 1386296_at AI639205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639205 /DB_XREF=gi:4700239 /DB_XREF=rx03880s /CLONE=rx03880 /FEA=EST /CNT=1 /TID=Rn.43507.1 /TIER=ConsEnd /STK=1 /UG=Rn.43507 /UG_TITLE=EST AI639205 1386299_at AI639471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639471 /DB_XREF=gi:4700505 /DB_XREF=rx04752s /CLONE=rx04752 /FEA=EST /CNT=1 /TID=Rn.43520.1 /TIER=ConsEnd /STK=1 /UG=Rn.43520 /UG_TITLE=EST AI639471 1386300_at AI638962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI638962 /DB_XREF=gi:4699996 /DB_XREF=rx01189s /CLONE=rx01189 /FEA=EST /CNT=1 /TID=Rn.43895.1 /TIER=ConsEnd /STK=1 /UG=Rn.43895 /UG_TITLE=EST AI638962 1386302_at AI179140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179140 /DB_XREF=gi:3729778 /DB_XREF=EST222824 /CLONE=RSPCC37 /FEA=EST /CNT=1 /TID=Rn.43965.2 /TIER=ConsEnd /STK=1 /UG=Rn.43965 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) AI179140 1386304_at AI638942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI638942 /DB_XREF=gi:4699976 /DB_XREF=rz00703s /CLONE=rz00703 /FEA=EST /CNT=1 /TID=Rn.44138.1 /TIER=ConsEnd /STK=1 /UG=Rn.44138 /UG_TITLE=EST AI638942 1386306_at AI639138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639138 /DB_XREF=gi:4700172 /DB_XREF=rx04403s /CLONE=rx04403 /FEA=EST /CNT=1 /TID=Rn.44145.1 /TIER=ConsEnd /STK=1 /UG=Rn.44145 /UG_TITLE=EST, Weakly similar to B48013 proline-rich proteoglycan 2 precursor, parotid - rat (R.norvegicus) AI639138 1386308_at AI639292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639292 /DB_XREF=gi:4700326 /DB_XREF=rx04138s /CLONE=rx04138 /FEA=EST /CNT=1 /TID=Rn.44153.1 /TIER=ConsEnd /STK=1 /UG=Rn.44153 /UG_TITLE=EST AI639292 1386309_at AI176361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176361 /DB_XREF=gi:3726999 /DB_XREF=EST219944 /CLONE=ROVBQ62 /FEA=EST /CNT=1 /TID=Rn.48912.2 /TIER=ConsEnd /STK=0 /UG=Rn.48912 /UG_TITLE=ESTs, Weakly similar to G02540 nucleobindin (H.sapiens) AI176361 Similar to TPR repeat-containing protein KIAA1043 LOC304558 304558 XM_001080633 /// XM_222260 0005488 // binding // inferred from electronic annotation 1386310_at AI412779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412779 /DB_XREF=gi:4256283 /DB_XREF=EST241079 /CLONE=RBRDS60 /FEA=EST /CNT=1 /TID=Rn.50664.2 /TIER=ConsEnd /STK=1 /UG=Rn.50664 /UG_TITLE=ESTs AI412779 1386311_at AI008479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008479 /DB_XREF=gi:4132898 /DB_XREF=EST202930 /CLONE=REMAX83 /FEA=EST /CNT=1 /TID=Rn.58664.2 /TIER=ConsEnd /STK=1 /UG=Rn.58664 /UG_TITLE=ESTs, Weakly similar to S12207 hypothetical protein (M.musculus) AI008479 1386313_x_at AI227882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227882 /DB_XREF=gi:4135290 /DB_XREF=EST224577 /CLONE=RBRCN09 /FEA=EST /CNT=1 /TID=Rn.64721.2 /TIER=ConsEnd /STK=1 /UG=Rn.64721 /UG_TITLE=ESTs AI227882 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4 Als2cr4 316412 NM_001108220 0005515 // protein binding // not recorded 1386316_at AI639328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639328 /DB_XREF=gi:4700362 /DB_XREF=rx03916s /CLONE=rx03916 /FEA=EST /CNT=1 /TID=Rn.80808.1 /TIER=ConsEnd /STK=1 /UG=Rn.80808 /UG_TITLE=EST AI639328 1386320_at AI072058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072058 /DB_XREF=gi:3398252 /DB_XREF=UI-R-C2-nf-a-07-0-UI.s1 /CLONE=UI-R-C2-nf-a-07-0-UI /FEA=EST /CNT=1 /TID=Rn.20704.2 /TIER=ConsEnd /STK=0 /UG=Rn.20704 /UG_TITLE=ESTs, Moderately similar to JC5930 serinearginine-rich protein-specific kinase (M.musculus) AI072058 SFRS protein kinase 3 Srpk3 293854 NM_184045 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1386321_s_at H31287 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31287 /DB_XREF=gi:976704 /DB_XREF=EST105188 /CLONE=RPCAG66 /FEA=EST /CNT=1 /TID=Rn.22325.2 /TIER=ConsEnd /STK=1 /UG=Rn.22325 /UG_TITLE=ESTs, Weakly similar to putative serinethreonine protein kinase MAK-V (M.musculus) H31287 tribbles homolog 3 (Drosophila) Trib3 246273 NM_144755 0006350 // transcription // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from sequence or structural similarity /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006915 // apoptosis // non-traceable author statement /// 0006915 // apoptosis // inferred from electronic annotation /// 0010827 // regulation of glucose transport // inferred from electronic annotation /// 0010827 // regulation of glucose transport // not recorded /// 0012501 // programmed cell death // non-traceable author statement /// 0016481 // negative regulation of transcription // not recorded /// 0032092 // positive regulation of protein binding // inferred from electronic annotation /// 0032092 // positive regulation of protein binding // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // not recorded /// 0043405 // regulation of MAP kinase activity // not recorded /// 0043405 // regulation of MAP kinase activity // inferred from sequence or structural similarity /// 0043405 // regulation of MAP kinase activity // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // not recorded /// 0045717 // negative regulation of fatty acid biosynthetic process // inferred from electronic annotation /// 0045717 // negative regulation of fatty acid biosynthetic process // not recorded /// 0051443 // positive regulation of ubiquitin-protein ligase activity // inferred from electronic annotation /// 0051443 // positive regulation of ubiquitin-protein ligase activity // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003714 // transcription corepressor activity // not recorded /// 0003714 // transcription corepressor activity // inferred from sequence or structural similarity /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from sequence or structural similarity /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0055106 // ubiquitin-protein ligase regulator activity // inferred from electronic annotation /// 0055106 // ubiquitin-protein ligase regulator activity // not recorded 1386324_at AI639244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639244 /DB_XREF=gi:4700278 /DB_XREF=rx02039s /CLONE=rx02039 /FEA=EST /CNT=1 /TID=Rn.43316.1 /TIER=ConsEnd /STK=1 /UG=Rn.43316 /UG_TITLE=EST AI639244 1386325_at BG153354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG153354 /DB_XREF=gi:12665384 /DB_XREF=nag13a12.x1 /CLONE=IMAGE:4175926 /FEA=EST /CNT=1 /TID=Rn.65636.1 /TIER=ConsEnd /STK=1 /UG=Rn.65636 /UG_TITLE=EST BG153354 1386327_at AI639450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639450 /DB_XREF=gi:4700484 /DB_XREF=rx03072s /CLONE=rx03072 /FEA=EST /CNT=1 /TID=Rn.43519.1 /TIER=ConsEnd /STK=1 /UG=Rn.43519 /UG_TITLE=EST AI639450 ceramide kinase-like Cerkl 502640 XR_008419 /// XR_086195 0006916 // anti-apoptosis // not recorded /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // not recorded 0004143 // diacylglycerol kinase activity // inferred from electronic annotation 1386331_at AI639137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639137 /DB_XREF=gi:4700171 /DB_XREF=rx04463s /CLONE=rx04463 /FEA=EST /CNT=1 /TID=Rn.43904.1 /TIER=ConsEnd /STK=1 /UG=Rn.43904 /UG_TITLE=EST AI639137 1386333_at AI044097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044097 /DB_XREF=gi:3291000 /DB_XREF=UI-R-C1-jv-b-02-0-UI.s1 /CLONE=UI-R-C1-jv-b-02-0-UI /FEA=EST /CNT=1 /TID=Rn.41237.2 /TIER=ConsEnd /STK=0 /UG=Rn.41237 /UG_TITLE=ESTs AI044097 1386334_at AI171578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171578 /DB_XREF=gi:3711618 /DB_XREF=EST217544 /CLONE=RMUBM77 /FEA=EST /CNT=1 /TID=Rn.29485.1 /TIER=ConsEnd /STK=1 /UG=Rn.29485 /UG_TITLE=EST, Moderately similar to T00742 ubiquitin-binding protein homolog A-735G6.2 (H.sapiens) AI171578 ubiquitin family domain containing 1 Ubfd1 293454 NM_001034911 1386337_at AI548910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548910 /DB_XREF=gi:4466398 /DB_XREF=UI-R-C3-tp-e-09-0-UI.s1 /CLONE=UI-R-C3-tp-e-09-0-UI /FEA=EST /CNT=1 /TID=Rn.12584.3 /TIER=ConsEnd /STK=0 /UG=Rn.12584 /UG_TITLE=ESTs AI548910 RGD1565210 RGD1565210 499072 XM_001071740 /// XM_574354 1386338_at AI704873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI704873 /DB_XREF=gi:4992773 /DB_XREF=UI-R-AC0-yq-d-04-0-UI.s1 /CLONE=UI-R-AC0-yq-d-04-0-UI /FEA=EST /CNT=1 /TID=Rn.41233.1 /TIER=ConsEnd /STK=1 /UG=Rn.41233 /UG_TITLE=EST AI704873 1386340_at BG057552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG057552 /DB_XREF=gi:12523156 /DB_XREF=nag14e04.x1 /CLONE=IMAGE:4176103 /FEA=EST /CNT=1 /TID=Rn.65594.1 /TIER=ConsEnd /STK=1 /UG=Rn.65594 /UG_TITLE=EST BG057552 1386342_at BG057568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG057568 /DB_XREF=gi:12523188 /DB_XREF=nag14g11.x1 /CLONE=IMAGE:4176213 /FEA=EST /CNT=1 /TID=Rn.65599.1 /TIER=ConsEnd /STK=1 /UG=Rn.65599 /UG_TITLE=EST BG057568 1386344_at BG662519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG662519 /DB_XREF=gi:13884441 /DB_XREF=DRAAAH02 /CLONE=DRAAAH02 /FEA=EST /CNT=1 /TID=Rn.74063.1 /TIER=ConsEnd /STK=1 /UG=Rn.74063 /UG_TITLE=EST BG662519 Ankylosis, progressive homolog (mouse) Ankh 114506 NM_053714 0006810 // transport // inferred from electronic annotation /// 0006817 // phosphate transport // inferred from electronic annotation /// 0006817 // phosphate transport // traceable author statement /// 0030500 // regulation of bone mineralization // not recorded /// 0030500 // regulation of bone mineralization // inferred from sequence or structural similarity /// 0030500 // regulation of bone mineralization // traceable author statement /// 0030505 // inorganic diphosphate transport // not recorded /// 0034220 // ion transmembrane transport // not recorded 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // traceable author statement 0005315 // inorganic phosphate transmembrane transporter activity // not recorded /// 0005315 // inorganic phosphate transmembrane transporter activity // traceable author statement /// 0015114 // phosphate transmembrane transporter activity // inferred from electronic annotation /// 0030504 // inorganic diphosphate transmembrane transporter activity // not recorded /// 0030504 // inorganic diphosphate transmembrane transporter activity // inferred from sequence or structural similarity 1386346_at BI275715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275715 /DB_XREF=gi:14919910 /DB_XREF=UI-R-CW0-bwm-h-04-0-UI.s1 /CLONE=UI-R-CW0-bwm-h-04-0-UI /FEA=EST /CNT=1 /TID=Rn.77501.1 /TIER=ConsEnd /STK=1 /UG=Rn.77501 /UG_TITLE=EST BI275715 transmembrane protein 19 Tmem19 299800 NM_199098 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1386348_at AI410655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410655 /DB_XREF=gi:4254159 /DB_XREF=EST238948 /CLONE=RHECW17 /FEA=EST /CNT=1 /TID=Rn.43149.1 /TIER=ConsEnd /STK=1 /UG=Rn.43149 /UG_TITLE=EST AI410655 1386350_at AI639437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639437 /DB_XREF=gi:4700471 /DB_XREF=rx04413s /CLONE=rx04413 /FEA=EST /CNT=1 /TID=Rn.43702.1 /TIER=ConsEnd /STK=1 /UG=Rn.43702 /UG_TITLE=EST AI639437 1386352_at AA892204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892204 /DB_XREF=gi:3019083 /DB_XREF=EST196007 /CLONE=RKIAN61 /FEA=EST /CNT=1 /TID=Rn.42331.1 /TIER=ConsEnd /STK=1 /UG=Rn.42331 /UG_TITLE=EST AA892204 1386354_at AI639492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639492 /DB_XREF=gi:4700526 /DB_XREF=rx03871s /CLONE=rx03871 /FEA=EST /CNT=1 /TID=Rn.43521.1 /TIER=ConsEnd /STK=1 /UG=Rn.43521 /UG_TITLE=EST, Weakly similar to B Chain B, Rat Granzyme B (n66q) Complexed To Ecotin (81-84 Iepd) (R.norvegicus) AI639492 similar to natural killer cell protease 7 RGD1564878 502002 XM_001058604 /// XM_577429 0006508 // proteolysis // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation 1386356_at AI639400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639400 /DB_XREF=gi:4700434 /DB_XREF=rx00134s /CLONE=rx00134 /FEA=EST /CNT=1 /TID=Rn.43206.1 /TIER=ConsEnd /STK=1 /UG=Rn.43206 /UG_TITLE=EST AI639400 1386358_at AI639222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639222 /DB_XREF=gi:4700256 /DB_XREF=rx04860s /CLONE=rx04860 /FEA=EST /CNT=1 /TID=Rn.44151.1 /TIER=ConsEnd /STK=1 /UG=Rn.44151 /UG_TITLE=EST AI639222 1386359_x_at AI639222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639222 /DB_XREF=gi:4700256 /DB_XREF=rx04860s /CLONE=rx04860 /FEA=EST /CNT=1 /TID=Rn.44151.1 /TIER=ConsEnd /STK=1 /UG=Rn.44151 /UG_TITLE=EST AI639222 1386361_at AI639391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639391 /DB_XREF=gi:4700425 /DB_XREF=rx02754s /CLONE=rx02754 /FEA=EST /CNT=1 /TID=Rn.43323.1 /TIER=ConsEnd /STK=1 /UG=Rn.43323 /UG_TITLE=EST AI639391 transmembrane epididymal protein 1 Teddm1 664710 NM_001039915 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1386364_at H31217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31217 /DB_XREF=gi:976634 /DB_XREF=EST105044 /CLONE=RPCAF34 /FEA=EST /CNT=1 /TID=Rn.7213.1 /TIER=ConsEnd /STK=1 /UG=Rn.7213 /UG_TITLE=EST H31217 Nucleoporin 37 Nup37 299706 NM_001106775 0000776 // kinetochore // inferred from electronic annotation /// 0000776 // kinetochore // not recorded /// 0005635 // nuclear envelope // not recorded /// 0031080 // Nup107-160 complex // inferred from electronic annotation /// 0031080 // Nup107-160 complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1386366_at AI231610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231610 /DB_XREF=gi:3815490 /DB_XREF=EST228298 /CLONE=REMDM68 /FEA=EST /CNT=1 /TID=Rn.24588.1 /TIER=ConsEnd /STK=1 /UG=Rn.24588 /UG_TITLE=EST AI231610 1386368_at AI639036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639036 /DB_XREF=gi:4700070 /DB_XREF=rx02866s /CLONE=rx02866 /FEA=EST /CNT=1 /TID=Rn.43192.1 /TIER=ConsEnd /STK=1 /UG=Rn.43192 /UG_TITLE=EST AI639036 1386370_at AI639519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639519 /DB_XREF=gi:4700553 /DB_XREF=rx00950s /CLONE=rx00950 /FEA=EST /CNT=1 /TID=Rn.43210.1 /TIER=ConsEnd /STK=1 /UG=Rn.43210 /UG_TITLE=EST AI639519 1386372_at AI639307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639307 /DB_XREF=gi:4700341 /DB_XREF=rx00837s /CLONE=rx00837 /FEA=EST /CNT=1 /TID=Rn.43320.1 /TIER=ConsEnd /STK=1 /UG=Rn.43320 /UG_TITLE=EST AI639307 1386374_at H33294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33294 /DB_XREF=gi:978711 /DB_XREF=EST109145 /CLONE=RPNAM10 /FEA=EST /CNT=1 /TID=Rn.14634.1 /TIER=ConsEnd /STK=1 /UG=Rn.14634 /UG_TITLE=EST H33294 1386376_at AA892173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892173 /DB_XREF=gi:3019052 /DB_XREF=EST195976 /CLONE=RKIAN24 /FEA=EST /CNT=1 /TID=Rn.14736.1 /TIER=ConsEnd /STK=1 /UG=Rn.14736 /UG_TITLE=EST AA892173 1386378_at AA850029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850029 /DB_XREF=gi:2937569 /DB_XREF=EST192796 /CLONE=RMUAL95 /FEA=EST /CNT=1 /TID=Rn.18092.2 /TIER=ConsEnd /STK=1 /UG=Rn.18092 /UG_TITLE=ESTs AA850029 family with sequence similarity 92, member A1 Fam92a1 297903 XM_001053730 /// XM_002726513 /// XM_002729463 /// XM_216357 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1386379_at AI172246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172246 /DB_XREF=gi:3712286 /DB_XREF=EST218246 /CLONE=RMUBW78 /FEA=EST /CNT=1 /TID=Rn.36845.1 /TIER=ConsEnd /STK=1 /UG=Rn.36845 /UG_TITLE=EST AI172246 1386381_at AI639491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639491 /DB_XREF=gi:4700525 /DB_XREF=rx03411s /CLONE=rx03411 /FEA=EST /CNT=1 /TID=Rn.43208.1 /TIER=ConsEnd /STK=1 /UG=Rn.43208 /UG_TITLE=EST AI639491 1386382_at AW534220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534220 /DB_XREF=gi:7176634 /DB_XREF=UI-R-C4-alq-f-12-0-UI.s1 /CLONE=UI-R-C4-alq-f-12-0-UI /FEA=EST /CNT=1 /TID=Rn.19665.3 /TIER=ConsEnd /STK=0 /UG=Rn.19665 /UG_TITLE=ESTs, Moderately similar to PEX3_RAT PEROXISOMAL ASSEMBLY PROTEIN PEX3 (PEROXIN-3) (R.norvegicus) AW534220 Oxysterol binding protein-like 1A Osbpl1a 259221 NM_172023 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation 1386383_at AI639186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639186 /DB_XREF=gi:4700220 /DB_XREF=rx00821s /CLONE=rx00821 /FEA=EST /CNT=1 /TID=Rn.43908.1 /TIER=ConsEnd /STK=1 /UG=Rn.43908 /UG_TITLE=EST AI639186 1386385_at BE102623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102623 /DB_XREF=gi:8494722 /DB_XREF=UI-R-BT1-aqs-b-07-0-UI.s1 /CLONE=UI-R-BT1-aqs-b-07-0-UI /FEA=EST /CNT=1 /TID=Rn.50354.1 /TIER=ConsEnd /STK=1 /UG=Rn.50354 /UG_TITLE=EST, Weakly similar to ETS1 RAT C-ETS-1 PROTEIN (R.norvegicus) BE102623 ets variant 2 Etv2 361544 XM_001079212 /// XM_341830 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1386387_at BE119829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119829 /DB_XREF=gi:8511934 /DB_XREF=UI-R-CA0-ban-e-05-0-UI.s1 /CLONE=UI-R-CA0-ban-e-05-0-UI /FEA=EST /CNT=1 /TID=Rn.65072.1 /TIER=ConsEnd /STK=1 /UG=Rn.65072 /UG_TITLE=ESTs, Weakly similar to SRY RAT SEX-DETERMINING REGION Y PROTEIN (R.norvegicus) BE119829 SRY-box containing gene 9 Sox9 140586 XM_001081628 /// XM_343981 0051216 // cartilage development // inferred from expression pattern /// 0051216 // cartilage development // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from mutant phenotype 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype 1386389_at AI639126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639126 /DB_XREF=gi:4700160 /DB_XREF=rx03923s /CLONE=rx03923 /FEA=EST /CNT=1 /TID=Rn.43056.1 /TIER=ConsEnd /STK=1 /UG=Rn.43056 /UG_TITLE=EST AI639126 1386390_at AI639354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639354 /DB_XREF=gi:4700388 /DB_XREF=rx02175s /CLONE=rx02175 /FEA=EST /CNT=1 /TID=Rn.43916.1 /TIER=ConsEnd /STK=1 /UG=Rn.43916 /UG_TITLE=EST AI639354 1386392_at AI104638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104638 /DB_XREF=gi:3708960 /DB_XREF=EST213927 /CLONE=RHECG86 /FEA=EST /CNT=1 /TID=Rn.28291.1 /TIER=ConsEnd /STK=1 /UG=Rn.28291 /UG_TITLE=EST, Highly similar to T12476 hypothetical protein DKFZp564L0562.1 (H.sapiens) AI104638 anaphase promoting complex subunit 10 Anapc10 361389 NM_001108445 0030071 // regulation of mitotic metaphase/anaphase transition // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070979 // protein K11-linked ubiquitination // inferred from electronic annotation /// 0070979 // protein K11-linked ubiquitination // not recorded 0005654 // nucleoplasm // not recorded /// 0005680 // anaphase-promoting complex // inferred from electronic annotation /// 0005680 // anaphase-promoting complex // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation 1386394_at AA956971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956971 /DB_XREF=gi:4239445 /DB_XREF=UI-R-E1-fl-h-11-0-UI.s1 /CLONE=UI-R-E1-fl-h-11-0-UI /FEA=EST /CNT=1 /TID=Rn.80983.1 /TIER=ConsEnd /STK=0 /UG=Rn.80983 /UG_TITLE=EST AA956971 1386395_at H31724 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31724 /DB_XREF=gi:977141 /DB_XREF=EST106070 /CLONE=RPCAW94 /FEA=EST /CNT=1 /TID=Rn.14587.1 /TIER=ConsEnd /STK=1 /UG=Rn.14587 /UG_TITLE=EST H31724 1386396_at AW528387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528387 /DB_XREF=gi:7170801 /DB_XREF=UI-R-BT1-ajx-h-03-0-UI.s1 /CLONE=UI-R-BT1-ajx-h-03-0-UI /FEA=EST /CNT=1 /TID=Rn.46859.1 /TIER=ConsEnd /STK=1 /UG=Rn.46859 /UG_TITLE=EST AW528387 dual specificity phosphatase 8 Dusp8 361679 NM_001108510 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation 1386399_at H31411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31411 /DB_XREF=gi:976828 /DB_XREF=EST105423 /CLONE=RPCAJ13 /FEA=EST /CNT=1 /TID=Rn.14568.1 /TIER=ConsEnd /STK=1 /UG=Rn.14568 /UG_TITLE=EST H31411 1386401_at H33654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33654 /DB_XREF=gi:979071 /DB_XREF=EST109853 /CLONE=RPNAV92 /FEA=EST /CNT=1 /TID=Rn.14655.1 /TIER=ConsEnd /STK=1 /UG=Rn.14655 /UG_TITLE=EST H33654 1386403_at AI639252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639252 /DB_XREF=gi:4700286 /DB_XREF=rx01259s /CLONE=rx01259 /FEA=EST /CNT=1 /TID=Rn.43065.1 /TIER=ConsEnd /STK=1 /UG=Rn.43065 /UG_TITLE=EST AI639252 1386404_at AI639198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639198 /DB_XREF=gi:4700232 /DB_XREF=rx02860s /CLONE=rx02860 /FEA=EST /CNT=1 /TID=Rn.43506.1 /TIER=ConsEnd /STK=1 /UG=Rn.43506 /UG_TITLE=EST AI639198 1386407_at AI137911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137911 /DB_XREF=gi:3638688 /DB_XREF=UI-R-A1-dp-g-10-0-UI.s1 /CLONE=UI-R-A1-dp-g-10-0-UI /FEA=EST /CNT=1 /TID=Rn.54104.1 /TIER=ConsEnd /STK=1 /UG=Rn.54104 /UG_TITLE=EST, Weakly similar to ITMB MOUSE INTEGRAL MEMBRANE PROTEIN 2B (M.musculus) AI137911 1386409_at AI178343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178343 /DB_XREF=gi:3728981 /DB_XREF=EST222012 /CLONE=RPLCP34 /FEA=EST /CNT=1 /TID=Rn.29214.1 /TIER=ConsEnd /STK=1 /UG=Rn.29214 /UG_TITLE=EST AI178343 1386410_at AW531135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531135 /DB_XREF=gi:7173549 /DB_XREF=UI-R-BT1-akv-b-04-0-UI.s1 /CLONE=UI-R-BT1-akv-b-04-0-UI /FEA=EST /CNT=1 /TID=Rn.47647.1 /TIER=ConsEnd /STK=1 /UG=Rn.47647 /UG_TITLE=EST AW531135 1386412_at AI639458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639458 /DB_XREF=gi:4700492 /DB_XREF=rx00892s /CLONE=rx00892 /FEA=EST /CNT=1 /TID=Rn.43704.1 /TIER=ConsEnd /STK=1 /UG=Rn.43704 /UG_TITLE=EST AI639458 1386414_at AW523909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523909 /DB_XREF=gi:7166294 /DB_XREF=UI-R-BO0-aie-d-06-0-UI.s1 /CLONE=UI-R-BO0-aie-d-06-0-UI /FEA=EST /CNT=1 /TID=Rn.64120.1 /TIER=ConsEnd /STK=0 /UG=Rn.64120 /UG_TITLE=ESTs, Highly similar to BI3 MOUSE BRAIN PROTEIN I3 (M.musculus) AW523909 brain protein I3 Bri3 304284 NM_001009604 0006164 // purine nucleotide biosynthetic process // inferred from electronic annotation /// 0009113 // purine base biosynthetic process // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from direct assay /// 0010035 // response to inorganic substance // inferred from direct assay /// 0048513 // organ development // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004637 // phosphoribosylamine-glycine ligase activity // inferred from electronic annotation /// 0004644 // phosphoribosylglycinamide formyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1386416_at AI639084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639084 /DB_XREF=gi:4700118 /DB_XREF=rx02784s /CLONE=rx02784 /FEA=EST /CNT=1 /TID=Rn.43051.1 /TIER=ConsEnd /STK=1 /UG=Rn.43051 /UG_TITLE=EST AI639084 1386418_at AI639330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639330 /DB_XREF=gi:4700364 /DB_XREF=rx00156s /CLONE=rx00156 /FEA=EST /CNT=1 /TID=Rn.43202.1 /TIER=ConsEnd /STK=1 /UG=Rn.43202 /UG_TITLE=EST AI639330 1386420_at AI178749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178749 /DB_XREF=gi:3729387 /DB_XREF=EST222431 /CLONE=RSPBK60 /FEA=EST /CNT=1 /TID=Rn.29251.1 /TIER=ConsEnd /STK=1 /UG=Rn.29251 /UG_TITLE=EST AI178749 1386422_at H31750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31750 /DB_XREF=gi:977167 /DB_XREF=EST106109 /CLONE=RPCAX36 /FEA=EST /CNT=1 /TID=Rn.42137.1 /TIER=ConsEnd /STK=1 /UG=Rn.42137 /UG_TITLE=EST H31750 dachsous 1 (Drosophila) Dchs1 308912 NM_001107544 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1386424_at AI178375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178375 /DB_XREF=gi:3729013 /DB_XREF=EST222044 /CLONE=RPLCP70 /FEA=EST /CNT=1 /TID=Rn.24179.2 /TIER=ConsEnd /STK=1 /UG=Rn.24179 /UG_TITLE=ESTs AI178375 Zinc finger protein 212 Zfp212 297066 XM_001053455 /// XM_231749 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1386425_at H33472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33472 /DB_XREF=gi:978889 /DB_XREF=EST109511 /CLONE=RPNAS43 /FEA=EST /CNT=1 /TID=Rn.14642.1 /TIER=ConsEnd /STK=1 /UG=Rn.14642 /UG_TITLE=EST H33472 1386426_at AI137869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137869 /DB_XREF=gi:3638646 /DB_XREF=UI-R-C0-hg-e-09-0-UI.s1 /CLONE=UI-R-C0-hg-e-09-0-UI /FEA=EST /CNT=1 /TID=Rn.33621.1 /TIER=ConsEnd /STK=1 /UG=Rn.33621 /UG_TITLE=EST AI137869 1386430_at AI639183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639183 /DB_XREF=gi:4700217 /DB_XREF=rx00561s /CLONE=rx00561 /FEA=EST /CNT=1 /TID=Rn.43196.1 /TIER=ConsEnd /STK=1 /UG=Rn.43196 /UG_TITLE=EST AI639183 1386433_at AI639213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639213 /DB_XREF=gi:4700247 /DB_XREF=rx01260s /CLONE=rx01260 /FEA=EST /CNT=1 /TID=Rn.43690.1 /TIER=ConsEnd /STK=1 /UG=Rn.43690 /UG_TITLE=EST AI639213 1386435_at AI101186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101186 /DB_XREF=gi:3704596 /DB_XREF=EST210475 /CLONE=RBRBG62 /FEA=EST /CNT=1 /TID=Rn.27937.1 /TIER=ConsEnd /STK=1 /UG=Rn.27937 /UG_TITLE=EST AI101186 transcription factor AP4 Tcfap4 360482 NM_001108267 0006461 // protein complex assembly // not recorded /// 0006978 // DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator // not recorded /// 0007090 // regulation of S phase of mitotic cell cycle // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010629 // negative regulation of gene expression // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043392 // negative regulation of DNA binding // not recorded /// 0043922 // negative regulation by host of viral transcription // not recorded /// 0043923 // positive regulation by host of viral transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0071157 // negative regulation of cell cycle arrest // not recorded /// 0071549 // cellular response to dexamethasone stimulus // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0003713 // transcription coactivator activity // not recorded /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042826 // histone deacetylase binding // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0046982 // protein heterodimerization activity // not recorded /// 0070888 // E-box binding // not recorded 1386437_at AI029414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029414 /DB_XREF=gi:4298402 /DB_XREF=UI-R-C0-iw-g-10-0-UI.s1 /CLONE=UI-R-C0-iw-g-10-0-UI /FEA=EST /CNT=1 /TID=Rn.52499.2 /TIER=ConsEnd /STK=0 /UG=Rn.52499 /UG_TITLE=ESTs AI029414 taxilin beta Txlnb 308622 NM_001135859 0005737 // cytoplasm // not recorded 1386439_at H31323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31323 /DB_XREF=gi:976740 /DB_XREF=EST105250 /CLONE=RPCAH32 /FEA=EST /CNT=1 /TID=Rn.42242.1 /TIER=ConsEnd /STK=1 /UG=Rn.42242 /UG_TITLE=EST H31323 Translocase of outer mitochondrial membrane 34 Tomm34 311621 NM_001044244 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // not recorded 1386440_a_at AI711250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711250 /DB_XREF=gi:5001026 /DB_XREF=UI-R-AE1-zc-h-10-0-UI.s1 /CLONE=UI-R-AE1-zc-h-10-0-UI /FEA=EST /CNT=1 /TID=Rn.11435.3 /TIER=ConsEnd /STK=1 /UG=Rn.11435 /UG_TITLE=ESTs, Weakly similar to polypeptide GalNAc transferase T1 (Rattus norvegicus) (R.norvegicus) AI711250 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2) Galnt2 292090 NM_001106196 0002378 // immunoglobulin biosynthetic process // not recorded /// 0002378 // immunoglobulin biosynthetic process // inferred from electronic annotation /// 0018242 // protein O-linked glycosylation via serine // not recorded /// 0018242 // protein O-linked glycosylation via serine // inferred from electronic annotation /// 0018243 // protein O-linked glycosylation via threonine // not recorded /// 0018243 // protein O-linked glycosylation via threonine // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005795 // Golgi stack // not recorded /// 0005795 // Golgi stack // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // not recorded /// 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030145 // manganese ion binding // not recorded /// 0030145 // manganese ion binding // inferred from electronic annotation 1386441_at AI711250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711250 /DB_XREF=gi:5001026 /DB_XREF=UI-R-AE1-zc-h-10-0-UI.s1 /CLONE=UI-R-AE1-zc-h-10-0-UI /FEA=EST /CNT=1 /TID=Rn.11435.3 /TIER=ConsEnd /STK=1 /UG=Rn.11435 /UG_TITLE=ESTs, Weakly similar to polypeptide GalNAc transferase T1 (Rattus norvegicus) (R.norvegicus) AI711250 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2) Galnt2 292090 NM_001106196 0002378 // immunoglobulin biosynthetic process // not recorded /// 0002378 // immunoglobulin biosynthetic process // inferred from electronic annotation /// 0018242 // protein O-linked glycosylation via serine // not recorded /// 0018242 // protein O-linked glycosylation via serine // inferred from electronic annotation /// 0018243 // protein O-linked glycosylation via threonine // not recorded /// 0018243 // protein O-linked glycosylation via threonine // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005795 // Golgi stack // not recorded /// 0005795 // Golgi stack // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // not recorded /// 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030145 // manganese ion binding // not recorded /// 0030145 // manganese ion binding // inferred from electronic annotation 1386446_at BG057557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG057557 /DB_XREF=gi:12523166 /DB_XREF=nag14f04.x1 /CLONE=IMAGE:4176151 /FEA=EST /CNT=1 /TID=Rn.65596.1 /TIER=ConsEnd /STK=1 /UG=Rn.65596 /UG_TITLE=EST BG057557 cadherin 1 Cdh1 83502 NM_031334 0001829 // trophectodermal cell differentiation // inferred from electronic annotation /// 0001829 // trophectodermal cell differentiation // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007416 // synapse assembly // inferred from mutant phenotype /// 0009636 // response to toxin // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0016337 // cell-cell adhesion // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0019538 // protein metabolic process // inferred from electronic annotation /// 0019538 // protein metabolic process // not recorded /// 0021983 // pituitary gland development // inferred from expression pattern /// 0031175 // neuron projection development // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042993 // positive regulation of transcription factor import into nucleus // inferred from electronic annotation /// 0042993 // positive regulation of transcription factor import into nucleus // not recorded /// 0043281 // regulation of caspase activity // inferred from electronic annotation /// 0043281 // regulation of caspase activity // not recorded /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded /// 0060662 // salivary gland cavitation // inferred from electronic annotation /// 0060662 // salivary gland cavitation // not recorded /// 0060693 // regulation of branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060693 // regulation of branching involved in salivary gland morphogenesis // not recorded /// 0071285 // cellular response to lithium ion // inferred from electronic annotation /// 0071285 // cellular response to lithium ion // not recorded /// 0071681 // cellular response to indole-3-methanol // inferred from electronic annotation /// 0071681 // cellular response to indole-3-methanol // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016328 // lateral plasma membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // not recorded /// 0016342 // catenin complex // inferred from electronic annotation /// 0016342 // catenin complex // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0043296 // apical junction complex // inferred from electronic annotation /// 0043296 // apical junction complex // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0042153 // RPTP-like protein binding // inferred from electronic annotation /// 0042153 // RPTP-like protein binding // not recorded /// 0045295 // gamma-catenin binding // inferred from electronic annotation /// 0045295 // gamma-catenin binding // not recorded 1386448_at AI639182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639182 /DB_XREF=gi:4700216 /DB_XREF=rx00101s /CLONE=rx00101 /FEA=EST /CNT=1 /TID=Rn.43062.1 /TIER=ConsEnd /STK=1 /UG=Rn.43062 /UG_TITLE=EST AI639182 1386450_at AI639253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639253 /DB_XREF=gi:4700287 /DB_XREF=rx01339s /CLONE=rx01339 /FEA=EST /CNT=1 /TID=Rn.43198.1 /TIER=ConsEnd /STK=1 /UG=Rn.43198 /UG_TITLE=ESTs AI639253 outer dense fiber of sperm tails 4 Odf4 303236 NM_001007670 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0001520 // outer dense fiber // inferred from electronic annotation /// 0001520 // outer dense fiber // not recorded /// 0009434 // microtubule-based flagellum // inferred from electronic annotation /// 0009434 // microtubule-based flagellum // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1386452_at AA859532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859532 /DB_XREF=gi:4230078 /DB_XREF=UI-R-E0-br-c-04-0-UI.s1 /CLONE=UI-R-E0-br-c-04-0-UI /FEA=EST /CNT=1 /TID=Rn.253.1 /TIER=ConsEnd /STK=1 /UG=Rn.253 /UG_TITLE=EST AA859532 1386454_at AI639159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639159 /DB_XREF=gi:4700193 /DB_XREF=rx01062s /CLONE=rx01062 /FEA=EST /CNT=1 /TID=Rn.44148.1 /TIER=ConsEnd /STK=1 /UG=Rn.44148 /UG_TITLE=EST AI639159 solute carrier family 23 (nucleobase transporters), member 3 Slc23a3 367298 NM_001109006 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1386456_at AA892111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892111 /DB_XREF=gi:3018990 /DB_XREF=EST195914 /CLONE=RKIAM49 /FEA=EST /CNT=1 /TID=Rn.14731.1 /TIER=ConsEnd /STK=1 /UG=Rn.14731 /UG_TITLE=EST AA892111 1386458_x_at AA899458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899458 /DB_XREF=gi:4231956 /DB_XREF=UI-R-E0-cu-h-06-0-UI.s2 /CLONE=UI-R-E0-cu-h-06-0-UI /FEA=EST /CNT=1 /TID=Rn.41398.3 /TIER=ConsEnd /STK=1 /UG=Rn.41398 /UG_TITLE=ESTs, Weakly similar to Y167_HUMAN HYPOTHETICAL PROTEIN KIAA0167 (H.sapiens) AA899458 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 Agap3 362300 NM_001108616 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1386460_x_at AI237251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237251 /DB_XREF=gi:3830757 /DB_XREF=EST233813 /CLONE=RPLCV58 /FEA=EST /CNT=1 /TID=Rn.20162.2 /TIER=ConsEnd /STK=1 /UG=Rn.20162 /UG_TITLE=ESTs AI237251 1386461_at AI639079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639079 /DB_XREF=gi:4700113 /DB_XREF=rx04945s /CLONE=rx04945 /FEA=EST /CNT=1 /TID=Rn.43502.1 /TIER=ConsEnd /STK=1 /UG=Rn.43502 /UG_TITLE=EST AI639079 1386463_at AA892945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892945 /DB_XREF=gi:3019824 /DB_XREF=EST196748 /CLONE=RKIBA22 /FEA=EST /CNT=1 /TID=Rn.13461.1 /TIER=ConsEnd /STK=1 /UG=Rn.13461 /UG_TITLE=EST AA892945 1386466_at H33093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33093 /DB_XREF=gi:978510 /DB_XREF=EST108772 /CLONE=RPNAH03 /FEA=EST /CNT=1 /TID=Rn.14624.1 /TIER=ConsEnd /STK=1 /UG=Rn.14624 /UG_TITLE=EST H33093 1386467_at H33140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33140 /DB_XREF=gi:978557 /DB_XREF=EST108847 /CLONE=RPNAH90 /FEA=EST /CNT=1 /TID=Rn.14629.1 /TIER=ConsEnd /STK=1 /UG=Rn.14629 /UG_TITLE=EST H33140 1386470_at H33577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33577 /DB_XREF=gi:978994 /DB_XREF=EST109715 /CLONE=RPNAU17 /FEA=EST /CNT=1 /TID=Rn.14649.1 /TIER=ConsEnd /STK=1 /UG=Rn.14649 /UG_TITLE=EST H33577 1386471_at AA850155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850155 /DB_XREF=gi:2937695 /DB_XREF=EST192922 /CLONE=ROVAD20 /FEA=EST /CNT=1 /TID=Rn.24870.3 /TIER=ConsEnd /STK=1 /UG=Rn.24870 /UG_TITLE=ESTs AA850155 mitochondrial ribosomal protein S27 Mrps27 361883 NM_001108543 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 1386472_at H33301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33301 /DB_XREF=gi:978718 /DB_XREF=EST109157 /CLONE=RPNAM37 /FEA=EST /CNT=1 /TID=Rn.32267.1 /TIER=ConsEnd /STK=1 /UG=Rn.32267 /UG_TITLE=ESTs H33301 1386473_at AA848540 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848540 /DB_XREF=gi:2936080 /DB_XREF=EST191300 /CLONE=RKIAC92 /FEA=EST /CNT=1 /TID=Rn.3917.3 /TIER=ConsEnd /STK=0 /UG=Rn.3917 /UG_TITLE=ESTs AA848540 DDB1 and CUL4 associated factor 6 Dcaf6 289181 XM_001071288 /// XM_002724885 /// XM_002728021 /// XM_213926 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0080008 // CUL4 RING ubiquitin ligase complex // not recorded 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded 1386474_at H31753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31753 /DB_XREF=gi:977170 /DB_XREF=EST106113 /CLONE=RPCAX41 /FEA=EST /CNT=1 /TID=Rn.42423.1 /TIER=ConsEnd /STK=1 /UG=Rn.42423 /UG_TITLE=EST H31753 1386477_at AI170046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170046 /DB_XREF=gi:3710086 /DB_XREF=EST215962 /CLONE=RLUBY05 /FEA=EST /CNT=1 /TID=Rn.67055.1 /TIER=ConsEnd /STK=1 /UG=Rn.67055 /UG_TITLE=EST AI170046 1386478_at H33101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33101 /DB_XREF=gi:978518 /DB_XREF=EST108789 /CLONE=RPNAH27 /FEA=EST /CNT=1 /TID=Rn.9269.3 /TIER=ConsEnd /STK=1 /UG=Rn.9269 /UG_TITLE=ESTs H33101 mitochondrial carrier triple repeat 1 Mcart1 313241 NM_001024785 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1386479_at AI071163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071163 /DB_XREF=gi:3397378 /DB_XREF=UI-R-C2-my-b-01-0-UI.s1 /CLONE=UI-R-C2-my-b-01-0-UI /FEA=EST /CNT=1 /TID=Rn.20450.1 /TIER=ConsEnd /STK=1 /UG=Rn.20450 /UG_TITLE=EST AI071163 1386482_at AI639024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639024 /DB_XREF=gi:4700058 /DB_XREF=rx01927s /CLONE=rx01927 /FEA=EST /CNT=1 /TID=Rn.43683.1 /TIER=ConsEnd /STK=1 /UG=Rn.43683 /UG_TITLE=EST AI639024 1386483_at AI639028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639028 /DB_XREF=gi:4700062 /DB_XREF=rx04807s /CLONE=rx04807 /FEA=EST /CNT=1 /TID=Rn.64254.2 /TIER=ConsEnd /STK=1 /UG=Rn.64254 /UG_TITLE=ESTs AI639028 1386486_at BF402155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402155 /DB_XREF=gi:11390130 /DB_XREF=UI-R-CA0-bhw-g-04-0-UI.s1 /CLONE=UI-R-CA0-bhw-g-04-0-UI /FEA=EST /CNT=1 /TID=Rn.59906.2 /TIER=ConsEnd /STK=1 /UG=Rn.59906 /UG_TITLE=ESTs, Moderately similar to S22695 restin (H.sapiens) BF402155 CAP-GLY domain containing linker protein 1 Clip1 65201 NM_031745 0005881 // cytoplasmic microtubule // inferred from direct assay /// 0005881 // cytoplasmic microtubule // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // not recorded /// 0008017 // microtubule binding // traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // traceable author statement /// 0051010 // microtubule plus-end binding // inferred from direct assay /// 0051010 // microtubule plus-end binding // not recorded 1386489_at AA965259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965259 /DB_XREF=gi:4280133 /DB_XREF=UI-R-C0-hd-b-06-0-UI.s1 /CLONE=UI-R-C0-hd-b-06-0-UI /FEA=EST /CNT=1 /TID=Rn.80984.1 /TIER=ConsEnd /STK=1 /UG=Rn.80984 /UG_TITLE=EST AA965259 1386491_at AA894070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894070 /DB_XREF=gi:3020949 /DB_XREF=EST197873 /CLONE=RSPAQ30 /FEA=EST /CNT=1 /TID=Rn.14850.1 /TIER=ConsEnd /STK=1 /UG=Rn.14850 /UG_TITLE=EST AA894070 1386493_at AA893985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893985 /DB_XREF=gi:3020864 /DB_XREF=EST197788 /CLONE=RPLAO24 /FEA=EST /CNT=1 /TID=Rn.14842.1 /TIER=ConsEnd /STK=1 /UG=Rn.14842 /UG_TITLE=EST AA893985 1386494_at AA891139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891139 /DB_XREF=gi:3018018 /DB_XREF=EST194942 /CLONE=RHEAP66 /FEA=EST /CNT=1 /TID=Rn.65017.1 /TIER=ConsEnd /STK=1 /UG=Rn.65017 /UG_TITLE=EST AA891139 similar to KIAA0339 protein RGD1311624 309001 XR_005469 /// XR_009622 0005634 // nucleus // inferred from electronic annotation /// 0035097 // histone methyltransferase complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1386495_x_at AA891139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891139 /DB_XREF=gi:3018018 /DB_XREF=EST194942 /CLONE=RHEAP66 /FEA=EST /CNT=1 /TID=Rn.65017.1 /TIER=ConsEnd /STK=1 /UG=Rn.65017 /UG_TITLE=EST AA891139 similar to KIAA0339 protein RGD1311624 309001 XR_005469 /// XR_009622 0005634 // nucleus // inferred from electronic annotation /// 0035097 // histone methyltransferase complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1386497_at AI639184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639184 /DB_XREF=gi:4700218 /DB_XREF=rx00521s /CLONE=rx00521 /FEA=EST /CNT=1 /TID=Rn.43505.1 /TIER=ConsEnd /STK=1 /UG=Rn.43505 /UG_TITLE=EST AI639184 1386499_at AI639018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639018 /DB_XREF=gi:4700052 /DB_XREF=rx01387s /CLONE=rx01387 /FEA=EST /CNT=1 /TID=Rn.43900.1 /TIER=ConsEnd /STK=1 /UG=Rn.43900 /UG_TITLE=EST AI639018 asparagine synthetase domain containing 1 Asnsd1 299507 NM_001106763 0006529 // asparagine biosynthetic process // inferred from electronic annotation 0004066 // asparagine synthase (glutamine-hydrolyzing) activity // inferred from electronic annotation 1386501_at AI639304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639304 /DB_XREF=gi:4700338 /DB_XREF=rx00157s /CLONE=rx00157 /FEA=EST /CNT=1 /TID=Rn.64789.1 /TIER=ConsEnd /STK=1 /UG=Rn.64789 /UG_TITLE=EST AI639304 1386503_at AA891032 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891032 /DB_XREF=gi:3017911 /DB_XREF=EST194835 /CLONE=RHEAO12 /FEA=EST /CNT=1 /TID=Rn.42330.1 /TIER=ConsEnd /STK=1 /UG=Rn.42330 /UG_TITLE=EST, Moderately similar to SERTHR-RICH PROTEIN T10 IN DGCR REGION (M.musculus) AA891032 similar to Ser/Thr-rich protein T10 in DGCR region RGD1310348 360738 NM_001108323 1386505_at AI639214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639214 /DB_XREF=gi:4700248 /DB_XREF=rx01240s /CLONE=rx01240 /FEA=EST /CNT=1 /TID=Rn.43910.1 /TIER=ConsEnd /STK=1 /UG=Rn.43910 /UG_TITLE=EST AI639214 1386507_at AA799858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799858 /DB_XREF=gi:2862813 /DB_XREF=EST189355 /CLONE=RHEAG21 /FEA=EST /CNT=1 /TID=Rn.6245.1 /TIER=ConsEnd /STK=1 /UG=Rn.6245 /UG_TITLE=EST, Moderately similar to ODPB RAT PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT, MITOCHONDRIAL PRECURSOR (R.norvegicus) AA799858 1386509_x_at AI231356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231356 /DB_XREF=gi:3815236 /DB_XREF=EST228044 /CLONE=REMDJ04 /FEA=EST /CNT=1 /TID=Rn.8943.3 /TIER=ConsEnd /STK=1 /UG=Rn.8943 /UG_TITLE=ESTs AI231356 RNA binding motif, single stranded interacting protein 3 Rbms3 680726 XM_001061329 /// XM_002727143 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1386511_x_at AI231356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231356 /DB_XREF=gi:3815236 /DB_XREF=EST228044 /CLONE=REMDJ04 /FEA=EST /CNT=1 /TID=Rn.8943.3 /TIER=ConsEnd /STK=0 /UG=Rn.8943 /UG_TITLE=ESTs AI231356 1386512_at BE112093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112093 /DB_XREF=gi:8504198 /DB_XREF=UI-R-BJ1-avk-e-12-0-UI.s1 /CLONE=UI-R-BJ1-avk-e-12-0-UI /FEA=EST /CNT=1 /TID=Rn.12940.2 /TIER=ConsEnd /STK=1 /UG=Rn.12940 /UG_TITLE=ESTs, Highly similar to I48724 zinc finger protein PZF - mouse (M.musculus) BE112093 Zinc finger protein 91 Zfp91 246282 NM_001169120 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1386514_at AA819731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819731 /DB_XREF=gi:4228029 /DB_XREF=UI-R-A0-ap-g-11-0-UI.s1 /CLONE=UI-R-A0-ap-g-11-0-UI /FEA=EST /CNT=1 /TID=Rn.53950.2 /TIER=ConsEnd /STK=1 /UG=Rn.53950 /UG_TITLE=ESTs AA819731 Hyaluronan and proteoglycan link protein 4 Hapln4 361129 NM_001108398 0007155 // cell adhesion // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // inferred from electronic annotation 1386517_at AI233363 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233363 /DB_XREF=gi:3817243 /DB_XREF=EST230051 /CLONE=RKIDE11 /FEA=EST /CNT=1 /TID=Rn.42296.1 /TIER=ConsEnd /STK=0 /UG=Rn.42296 /UG_TITLE=EST, Moderately similar to 60S RIBOSOMAL PROTEIN L30 (R.norvegicus) AI233363 Ribosomal protein L30 Rpl30 64640 NM_022699 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1386518_at BI294557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294557 /DB_XREF=gi:14957124 /DB_XREF=UI-R-DK0-cel-f-05-0-UI.s1 /CLONE=UI-R-DK0-cel-f-05-0-UI /FEA=EST /CNT=1 /TID=Rn.23885.2 /TIER=ConsEnd /STK=0 /UG=Rn.23885 /UG_TITLE=ESTs, Highly similar to IRF2 MOUSE INTERFERON REGULATORY FACTOR 2 (M.musculus) BI294557 interferon regulatory factor 2 Irf2 290749 NM_001047086 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1386519_x_at AI236030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236030 /DB_XREF=gi:3829536 /DB_XREF=EST232592 /CLONE=ROVDA44 /FEA=EST /CNT=1 /TID=Rn.42383.1 /TIER=ConsEnd /STK=1 /UG=Rn.42383 /UG_TITLE=EST AI236030 1386520_at AI713965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI713965 /DB_XREF=gi:5017765 /DB_XREF=UI-R-AB1-yt-h-03-0-UI.s1 /CLONE=UI-R-AB1-yt-h-03-0-UI /FEA=EST /CNT=1 /TID=Rn.22133.2 /TIER=ConsEnd /STK=1 /UG=Rn.22133 /UG_TITLE=ESTs, Highly similar to IRX3 MOUSE IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX-3 (M.musculus) AI713965 Iroquois homeobox 3 Irx3 307721 NM_001107413 0001656 // metanephros development // not recorded /// 0007498 // mesoderm development // not recorded /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0072047 // proximal/distal pattern formation involved in nephron development // not recorded /// 0072086 // specification of loop of Henle identity // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 1386521_at AI511291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511291 /DB_XREF=gi:4416990 /DB_XREF=UI-R-C3-sv-d-09-0-UI.s1 /CLONE=UI-R-C3-sv-d-09-0-UI /FEA=EST /CNT=4 /TID=Rn.22694.3 /TIER=ConsEnd /STK=0 /UG=Rn.22694 /UG_TITLE=ESTs, Highly similar to AKA2_HUMAN A KINASE ANCHOR PROTEIN 2 (PROTEIN KINASE A ANCHORING PROTEIN 2) (PRKA2) (H.sapiens) AI511291 1386525_at AI556851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556851 /DB_XREF=gi:4489214 /DB_XREF=UI-R-C2p-ro-g-05-0-UI.s1 /CLONE=UI-R-C2p-ro-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.35526.2 /TIER=ConsEnd /STK=0 /UG=Rn.35526 /UG_TITLE=ESTs, Weakly similar to A56577 microtubule-associated protein MAP 1B - rat (R.norvegicus) AI556851 THO complex 2 Thoc2 313308 NM_001191756 /// XM_001058768 /// XM_233081 0006406 // mRNA export from nucleus // not recorded /// 0046784 // intronless viral mRNA export from host nucleus // not recorded 0000346 // transcription export complex // not recorded /// 0000347 // THO complex // not recorded /// 0000445 // THO complex part of transcription export complex // not recorded 0005515 // protein binding // not recorded 1386526_at BF561612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561612 /DB_XREF=gi:11671342 /DB_XREF=UI-R-C0-ie-e-08-0-UI.r1 /CLONE=UI-R-C0-ie-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.13087.2 /TIER=ConsEnd /STK=0 /UG=Rn.13087 /UG_TITLE=ESTs BF561612 LIM homeobox 5 Lhx5 124451 NM_139036 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0021549 // cerebellum development // inferred from electronic annotation /// 0021549 // cerebellum development // not recorded /// 0021702 // cerebellar Purkinje cell differentiation // inferred from electronic annotation /// 0021702 // cerebellar Purkinje cell differentiation // not recorded /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0021846 // cell proliferation in forebrain // inferred from electronic annotation /// 0021846 // cell proliferation in forebrain // not recorded /// 0021879 // forebrain neuron differentiation // inferred from electronic annotation /// 0021879 // forebrain neuron differentiation // not recorded /// 0021937 // cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation // inferred from electronic annotation /// 0021937 // cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386529_at BF564309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564309 /DB_XREF=gi:11674039 /DB_XREF=UI-R-C4-aln-a-11-0-UI.r1 /CLONE=UI-R-C4-aln-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.65567.1 /TIER=ConsEnd /STK=0 /UG=Rn.65567 /UG_TITLE=ESTs BF564309 1386530_at AW141081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141081 /DB_XREF=gi:6160849 /DB_XREF=EST291104 /CLONE=RGIBB30 /FEA=EST /CNT=1 /TID=Rn.25308.2 /TIER=ConsEnd /STK=0 /UG=Rn.25308 /UG_TITLE=ESTs AW141081 1386535_at BG667163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667163 /DB_XREF=gi:13889085 /DB_XREF=DRA08F07 /CLONE=DRA08F07 /FEA=EST /CNT=1 /TID=Rn.74085.1 /TIER=ConsEnd /STK=0 /UG=Rn.74085 /UG_TITLE=EST BG667163 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked Ddx3x 317335 NM_001108246 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1386538_at AW916827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916827 /DB_XREF=gi:8082669 /DB_XREF=EST348235 /CLONE=RGIDW76 /FEA=EST /CNT=1 /TID=Rn.24001.2 /TIER=ConsEnd /STK=0 /UG=Rn.24001 /UG_TITLE=ESTs AW916827 similar to KIAA1919 protein RGD1310495 309809 XM_001063192 /// XM_228270 0055085 // transmembrane transport // inferred from electronic annotation 1386540_at BG666051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666051 /DB_XREF=gi:13887973 /DB_XREF=DRACMF08 /CLONE=DRACMF08 /FEA=EST /CNT=1 /TID=Rn.16698.2 /TIER=ConsEnd /STK=0 /UG=Rn.16698 /UG_TITLE=ESTs BG666051 1386541_at BF567705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567705 /DB_XREF=gi:11677435 /DB_XREF=UI-R-BO0-ahj-c-08-0-UI.r1 /CLONE=UI-R-BO0-ahj-c-08-0-UI /FEA=EST /CNT=1 /TID=Rn.7299.2 /TIER=ConsEnd /STK=0 /UG=Rn.7299 /UG_TITLE=ESTs BF567705 spermatogenesis associated 9 Spata9 294594 NM_001106399 1386543_at BF559650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559650 /DB_XREF=gi:11669380 /DB_XREF=UI-R-C0-gs-g-06-0-UI.r1 /CLONE=UI-R-C0-gs-g-06-0-UI /FEA=EST /CNT=1 /TID=Rn.11668.2 /TIER=ConsEnd /STK=0 /UG=Rn.11668 /UG_TITLE=ESTs BF559650 F-box and leucine-rich repeat protein 8 Fbxl8 498941 NM_001109128 0005515 // protein binding // not recorded 1386545_at BF549788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549788 /DB_XREF=gi:11659518 /DB_XREF=UI-R-A0-az-f-06-0-UI.r1 /CLONE=UI-R-A0-az-f-06-0-UI /FEA=EST /CNT=1 /TID=Rn.33834.2 /TIER=ConsEnd /STK=0 /UG=Rn.33834 /UG_TITLE=ESTs BF549788 COP9 constitutive photomorphogenic homolog subunit 7B (Arabidopsis) Cops7b 363273 NM_001108807 1386547_at BF522970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522970 /DB_XREF=gi:11630937 /DB_XREF=UI-R-C2p-rx-h-12-0-UI.r1 /CLONE=UI-R-C2p-rx-h-12-0-UI /FEA=EST /CNT=1 /TID=Rn.35373.2 /TIER=ConsEnd /STK=0 /UG=Rn.35373 /UG_TITLE=ESTs, Weakly similar to T08709 hypothetical protein DKFZp564D166.1 (H.sapiens) BF522970 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 Tanc2 303599 NM_001191653 /// XM_001081577 /// XM_221028 0005488 // binding // inferred from electronic annotation 1386550_at BF563739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563739 /DB_XREF=gi:11673469 /DB_XREF=UI-R-BT1-akq-g-09-0-UI.r1 /CLONE=UI-R-BT1-akq-g-09-0-UI /FEA=EST /CNT=1 /TID=Rn.47535.2 /TIER=ConsEnd /STK=0 /UG=Rn.47535 /UG_TITLE=ESTs BF563739 IKAROS family zinc finger 5 Ikzf5 309031 NM_001107555 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1386551_at BF562849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562849 /DB_XREF=gi:11672579 /DB_XREF=UI-R-BO0-aie-c-02-0-UI.r1 /CLONE=UI-R-BO0-aie-c-02-0-UI /FEA=EST /CNT=1 /TID=Rn.45420.2 /TIER=ConsEnd /STK=0 /UG=Rn.45420 /UG_TITLE=ESTs BF562849 1386552_at BF284027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284027 /DB_XREF=gi:11215097 /DB_XREF=EST448618 /CLONE=RGIEK08 /FEA=EST /CNT=1 /TID=Rn.66026.1 /TIER=ConsEnd /STK=0 /UG=Rn.66026 /UG_TITLE=EST BF284027 1386554_at BF567806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567806 /DB_XREF=gi:11677536 /DB_XREF=UI-R-BO0-ahm-e-03-0-UI.r1 /CLONE=UI-R-BO0-ahm-e-03-0-UI /FEA=EST /CNT=1 /TID=Rn.45543.2 /TIER=ConsEnd /STK=0 /UG=Rn.45543 /UG_TITLE=ESTs BF567806 1386555_at BF563960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563960 /DB_XREF=gi:11673690 /DB_XREF=UI-R-C4-akw-g-08-0-UI.r1 /CLONE=UI-R-C4-akw-g-08-0-UI /FEA=EST /CNT=1 /TID=Rn.34251.2 /TIER=ConsEnd /STK=0 /UG=Rn.34251 /UG_TITLE=ESTs BF563960 1386557_at BF288064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288064 /DB_XREF=gi:11219134 /DB_XREF=EST452655 /CLONE=RGIGP11 /FEA=EST /CNT=1 /TID=Rn.55501.1 /TIER=ConsEnd /STK=0 /UG=Rn.55501 /UG_TITLE=EST BF288064 1386565_at BF556081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556081 /DB_XREF=gi:11665811 /DB_XREF=UI-R-A1-eb-e-04-0-UI.r1 /CLONE=UI-R-A1-eb-e-04-0-UI /FEA=EST /CNT=1 /TID=Rn.15385.2 /TIER=ConsEnd /STK=0 /UG=Rn.15385 /UG_TITLE=ESTs BF556081 1386566_at BF558962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558962 /DB_XREF=gi:11668692 /DB_XREF=UI-R-A0-ba-e-09-0-UI.r1 /CLONE=UI-R-A0-ba-e-09-0-UI /FEA=EST /CNT=1 /TID=Rn.34987.3 /TIER=ConsEnd /STK=0 /UG=Rn.34987 /UG_TITLE=ESTs BF558962 1386568_at BF557891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557891 /DB_XREF=gi:11667669 /DB_XREF=UI-R-C0-hf-e-09-0-UI.r1 /CLONE=UI-R-C0-hf-e-09-0-UI /FEA=EST /CNT=1 /TID=Rn.12385.2 /TIER=ConsEnd /STK=0 /UG=Rn.12385 /UG_TITLE=ESTs BF557891 interferon regulatory factor 6 Irf6 364081 NM_001108859 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0030216 // keratinocyte differentiation // not recorded /// 0043588 // skin development // not recorded /// 0043616 // keratinocyte proliferation // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0048468 // cell development // not recorded /// 0060644 // mammary gland epithelial cell differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded 1386569_at BF563922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563922 /DB_XREF=gi:11673652 /DB_XREF=UI-R-BT1-akv-f-03-0-UI.r1 /CLONE=UI-R-BT1-akv-f-03-0-UI /FEA=EST /CNT=1 /TID=Rn.47663.2 /TIER=ConsEnd /STK=0 /UG=Rn.47663 /UG_TITLE=ESTs BF563922 1386571_at BF567145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567145 /DB_XREF=gi:11676875 /DB_XREF=UI-R-BO0-agl-g-07-0-UI.r1 /CLONE=UI-R-BO0-agl-g-07-0-UI /FEA=EST /CNT=1 /TID=Rn.43133.2 /TIER=ConsEnd /STK=0 /UG=Rn.43133 /UG_TITLE=ESTs BF567145 similar to adaptor molecule SRCASM RGD1562626 287622 XM_002724537 /// XM_002727790 0006886 // intracellular protein transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1386573_a_at BF546904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546904 /DB_XREF=gi:11638011 /DB_XREF=UI-R-C0-jc-g-04-0-UI.r1 /CLONE=UI-R-C0-jc-g-04-0-UI /FEA=EST /CNT=1 /TID=Rn.18516.2 /TIER=ConsEnd /STK=0 /UG=Rn.18516 /UG_TITLE=ESTs BF546904 1386574_at BF546904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546904 /DB_XREF=gi:11638011 /DB_XREF=UI-R-C0-jc-g-04-0-UI.r1 /CLONE=UI-R-C0-jc-g-04-0-UI /FEA=EST /CNT=1 /TID=Rn.18516.2 /TIER=ConsEnd /STK=0 /UG=Rn.18516 /UG_TITLE=ESTs BF546904 1386577_at AW142481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142481 /DB_XREF=gi:6162380 /DB_XREF=EST292733 /CLONE=RGIAM79 /FEA=EST /CNT=1 /TID=Rn.14659.2 /TIER=ConsEnd /STK=0 /UG=Rn.14659 /UG_TITLE=ESTs AW142481 kelch-like 23 (Drosophila) Klhl23 311114 NM_001134504 0005515 // protein binding // inferred from electronic annotation 1386580_at AW142797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142797 /DB_XREF=gi:6162696 /DB_XREF=EST293050 /CLONE=RGIAV86 /FEA=EST /CNT=1 /TID=Rn.23072.2 /TIER=ConsEnd /STK=0 /UG=Rn.23072 /UG_TITLE=ESTs, Highly similar to WD repeat domain 8; DD57 (Mus musculus) (M.musculus) AW142797 WD repeat domain 8 Wdr8 366515 NM_001014262 0005515 // protein binding // inferred from electronic annotation 1386581_at AW141214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141214 /DB_XREF=gi:6160994 /DB_XREF=EST291250 /CLONE=RGIBF96 /FEA=EST /CNT=1 /TID=Rn.23339.2 /TIER=ConsEnd /STK=0 /UG=Rn.23339 /UG_TITLE=ESTs AW141214 0007155 // cell adhesion // inferred from electronic annotation 0008305 // integrin complex // inferred from electronic annotation 1386583_at AA859497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859497 /DB_XREF=gi:4230043 /DB_XREF=UI-R-E0-bv-g-09-0-UI.s1 /CLONE=UI-R-E0-bv-g-09-0-UI /FEA=EST /CNT=1 /TID=Rn.238.2 /TIER=ConsEnd /STK=0 /UG=Rn.238 /UG_TITLE=ESTs AA859497 isoleucyl-tRNA synthetase Iars 306804 NM_001100572 0006412 // translation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004822 // isoleucine-tRNA ligase activity // inferred from electronic annotation /// 0004822 // isoleucine-tRNA ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1386584_x_at AI045356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045356 /DB_XREF=gi:3292175 /DB_XREF=UI-R-C1-ka-b-05-0-UI.s1 /CLONE=UI-R-C1-ka-b-05-0-UI /FEA=EST /CNT=1 /TID=Rn.24804.2 /TIER=ConsEnd /STK=0 /UG=Rn.24804 /UG_TITLE=ESTs AI045356 1386586_at AA996838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996838 /DB_XREF=gi:4280602 /DB_XREF=UI-R-C0-hg-e-04-0-UI.s1 /CLONE=UI-R-C0-hg-e-04-0-UI /FEA=EST /CNT=1 /TID=Rn.25198.2 /TIER=ConsEnd /STK=0 /UG=Rn.25198 /UG_TITLE=ESTs, Weakly similar to A29938 MAK11 protein - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AA996838 PAK1 interacting protein 1 Pak1ip1 361232 NM_001037356 1386587_at AW144448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144448 /DB_XREF=gi:6164347 /DB_XREF=EST294744 /CLONE=RGICT62 /FEA=EST /CNT=1 /TID=Rn.25408.2 /TIER=ConsEnd /STK=0 /UG=Rn.25408 /UG_TITLE=ESTs AW144448 BTB (POZ) domain containing 12 Btbd12 302953 XM_001079342 /// XM_220211 0000724 // double-strand break repair via homologous recombination // not recorded /// 0006281 // DNA repair // not recorded /// 0006289 // nucleotide-excision repair // not recorded /// 0010792 // DNA double-strand break processing involved in repair via single-strand annealing // not recorded 0000784 // nuclear chromosome, telomeric region // not recorded /// 0000790 // nuclear chromatin // not recorded /// 0033557 // Slx1-Slx4 complex // not recorded /// 0048476 // Holliday junction resolvase complex // not recorded /// 0070522 // ERCC4-ERCC1 complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008047 // enzyme activator activity // not recorded /// 0008821 // crossover junction endodeoxyribonuclease activity // not recorded /// 0017108 // 5'-flap endonuclease activity // not recorded /// 0048257 // 3'-flap endonuclease activity // not recorded 1386589_at AW143518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143518 /DB_XREF=gi:6163326 /DB_XREF=EST293723 /CLONE=RGIBP41 /FEA=EST /CNT=1 /TID=Rn.43604.3 /TIER=ConsEnd /STK=0 /UG=Rn.43604 /UG_TITLE=ESTs AW143518 1386592_at AI639154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639154 /DB_XREF=gi:4700188 /DB_XREF=rx00342s /CLONE=rx00342 /FEA=EST /CNT=1 /TID=Rn.67578.1 /TIER=ConsEnd /STK=0 /UG=Rn.67578 /UG_TITLE=EST AI639154 1386594_at BF558518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558518 /DB_XREF=gi:11668248 /DB_XREF=UI-R-C1-ld-f-09-0-UI.r1 /CLONE=UI-R-C1-ld-f-09-0-UI /FEA=EST /CNT=1 /TID=Rn.39317.3 /TIER=ConsEnd /STK=0 /UG=Rn.39317 /UG_TITLE=ESTs BF558518 1386596_at BF563673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563673 /DB_XREF=gi:11673403 /DB_XREF=UI-R-BT1-akl-c-05-0-UI.r1 /CLONE=UI-R-BT1-akl-c-05-0-UI /FEA=EST /CNT=1 /TID=Rn.47227.2 /TIER=ConsEnd /STK=0 /UG=Rn.47227 /UG_TITLE=ESTs BF563673 Speedy homolog A (Xenopus laevis) Spdya 192209 NM_138855 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0000082 // G1/S transition of mitotic cell cycle // inferred from sequence or structural similarity /// 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // not recorded /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // inferred from sequence or structural similarity /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0019901 // protein kinase binding // inferred from electronic annotation 1386597_s_at BF563673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563673 /DB_XREF=gi:11673403 /DB_XREF=UI-R-BT1-akl-c-05-0-UI.r1 /CLONE=UI-R-BT1-akl-c-05-0-UI /FEA=EST /CNT=1 /TID=Rn.47227.2 /TIER=ConsEnd /STK=0 /UG=Rn.47227 /UG_TITLE=ESTs BF563673 speedy homolog A (Xenopus laevis) Spdya 192209 NM_138855 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0000082 // G1/S transition of mitotic cell cycle // inferred from sequence or structural similarity /// 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // not recorded /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // inferred from sequence or structural similarity /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0019901 // protein kinase binding // inferred from electronic annotation 1386598_at BF557807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557807 /DB_XREF=gi:11667537 /DB_XREF=UI-R-C0-gw-e-05-0-UI.r1 /CLONE=UI-R-C0-gw-e-05-0-UI /FEA=EST /CNT=1 /TID=Rn.6493.2 /TIER=ConsEnd /STK=0 /UG=Rn.6493 /UG_TITLE=ESTs, Weakly similar to T-CELL ECTO-ADP-RIBOSYLTRANSFERASE 1 PRECURSOR (R.norvegicus) BF557807 ADP-ribosyltransferase 1 Art1 308873 NM_001107541 0006471 // protein ADP-ribosylation // inferred from electronic annotation /// 0006471 // protein ADP-ribosylation // not recorded 0009986 // cell surface // not recorded /// 0031225 // anchored to membrane // not recorded 0003950 // NAD+ ADP-ribosyltransferase activity // not recorded /// 0003956 // NAD(P)+-protein-arginine ADP-ribosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1386600_at BF522129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522129 /DB_XREF=gi:11630096 /DB_XREF=UI-R-A0-am-h-07-0-UI.r1 /CLONE=UI-R-A0-am-h-07-0-UI /FEA=EST /CNT=1 /TID=Rn.1287.2 /TIER=ConsEnd /STK=0 /UG=Rn.1287 /UG_TITLE=ESTs BF522129 1386602_at BF559179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559179 /DB_XREF=gi:11668909 /DB_XREF=UI-R-A1-ea-h-08-0-UI.r1 /CLONE=UI-R-A1-ea-h-08-0-UI /FEA=EST /CNT=1 /TID=Rn.8397.2 /TIER=ConsEnd /STK=0 /UG=Rn.8397 /UG_TITLE=ESTs, Moderately similar to G01251 Rar protein (H.sapiens) BF559179 Rab40b, member RAS oncogene family Rab40b 303754 NM_001107076 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1386604_at AW141549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141549 /DB_XREF=gi:6161352 /DB_XREF=EST291608 /CLONE=RGIBZ11 /FEA=EST /CNT=1 /TID=Rn.62740.2 /TIER=ConsEnd /STK=0 /UG=Rn.62740 /UG_TITLE=ESTs, Moderately similar to T25031 hypothetical protein T20D3.3 - Caenorhabditis elegans (C.elegans) AW141549 membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3) Mpp3 114202 XM_001081482 /// XM_340911 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction 1386606_at AA848353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848353 /DB_XREF=gi:2935893 /DB_XREF=EST191113 /CLONE=RKIAB35 /FEA=EST /CNT=1 /TID=Rn.54060.1 /TIER=ConsEnd /STK=0 /UG=Rn.54060 /LL=56281 /UG_GENE=Rpml2 /UG_TITLE=ribosomal protein, mitochondrial, L2 AA848353 Mitochondrial ribosomal protein L37 Mrpl37 56281 NM_001004235 0006412 // translation // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1386608_at BI395730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI395730 /DB_XREF=gi:15091239 /DB_XREF=EST531601 /CLONE=RGICM05 /FEA=EST /CNT=1 /TID=Rn.13294.2 /TIER=ConsEnd /STK=0 /UG=Rn.13294 /UG_TITLE=ESTs BI395730 1386610_at BG665272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665272 /DB_XREF=gi:13887194 /DB_XREF=DRACAG03 /CLONE=DRACAG03 /FEA=EST /CNT=1 /TID=Rn.18963.2 /TIER=ConsEnd /STK=0 /UG=Rn.18963 /UG_TITLE=ESTs, Moderately similar to T50663 RCC1-like G exchanging factor RLG (H.sapiens) BG665272 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 Rcbtb2 290363 NM_199084 0005515 // protein binding // inferred from electronic annotation 1386611_at BG667175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667175 /DB_XREF=gi:13889097 /DB_XREF=DRAAAIA03 /CLONE=DRAAAIA03 /FEA=EST /CNT=1 /TID=Rn.22224.2 /TIER=ConsEnd /STK=0 /UG=Rn.22224 /UG_TITLE=ESTs BG667175 kelch-like 24 (Drosophila) Klhl24 303803 NM_181473 0005737 // cytoplasm // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043204 // perikaryon // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1386614_at BG671466 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671466 /DB_XREF=gi:13893565 /DB_XREF=DRNBSB10 /CLONE=DRNBSB10 /FEA=EST /CNT=1 /TID=Rn.39086.2 /TIER=ConsEnd /STK=0 /UG=Rn.39086 /UG_TITLE=ESTs, Moderately similar to T4S9_MOUSE TRANSMEMBRANE 4 SUPERFAMILY, MEMBER 8 (TETRASPANIN 5) (TSPAN-5) (M.musculus) BG671466 F-box only protein 23 Fbxo23 306771 NM_001013138 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1386615_at BG665096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665096 /DB_XREF=gi:13887018 /DB_XREF=DRABYC10 /CLONE=DRABYC10 /FEA=EST /CNT=1 /TID=Rn.45074.2 /TIER=ConsEnd /STK=0 /UG=Rn.45074 /UG_TITLE=ESTs, Weakly similar to JC7350 N-acetylglucosamine-6-O-sulfotransferase (EC 2.8.2.-) (validated) - mouse (M.musculus) BG665096 carbohydrate sulfotransferase 2 Chst2 367145 XM_001068574 /// XM_345970 0008146 // sulfotransferase activity // inferred from electronic annotation 1386618_at BG665786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665786 /DB_XREF=gi:13887708 /DB_XREF=DRACIF05 /CLONE=DRACIF05 /FEA=EST /CNT=1 /TID=Rn.49088.3 /TIER=ConsEnd /STK=0 /UG=Rn.49088 /UG_TITLE=ESTs, Weakly similar to B48013 proline-rich proteoglycan 2 precursor, parotid - rat (R.norvegicus) BG665786 FLYWCH-type zinc finger 1 Flywch1 360488 XM_001056224 /// XM_340760 1386619_at BG669808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669808 /DB_XREF=gi:13891730 /DB_XREF=DRNAAKE05 /CLONE=DRNAAKE05 /FEA=EST /CNT=1 /TID=Rn.51642.2 /TIER=ConsEnd /STK=0 /UG=Rn.51642 /UG_TITLE=ESTs BG669808 1386621_at AW142419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142419 /DB_XREF=gi:6162318 /DB_XREF=EST292671 /CLONE=RGIAL21 /FEA=EST /CNT=1 /TID=Rn.24116.3 /TIER=ConsEnd /STK=0 /UG=Rn.24116 /UG_TITLE=ESTs AW142419 1386622_at BF542874 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542874 /DB_XREF=gi:11633987 /DB_XREF=UI-R-C3-to-d-12-0-UI.r1 /CLONE=UI-R-C3-to-d-12-0-UI /FEA=EST /CNT=1 /TID=Rn.42026.2 /TIER=ConsEnd /STK=0 /UG=Rn.42026 /UG_TITLE=ESTs BF542874 Similar to chromosome 16 open reading frame 28 RGD1565247 302987 XM_001059160 /// XM_220238 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386623_at BF543142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543142 /DB_XREF=gi:11634249 /DB_XREF=UI-R-AG1-aao-d-03-0-UI.r1 /CLONE=UI-R-AG1-aao-d-03-0-UI /FEA=EST /CNT=1 /TID=Rn.43573.2 /TIER=ConsEnd /STK=0 /UG=Rn.43573 /UG_TITLE=ESTs, Weakly similar to RNPH_CAEEL RIBONUCLEASE PH-LIKE PROTEIN B0564.1 (C.elegans) BF543142 Exosome component 6 Exosc6 307850 XM_001077520 /// XM_226471 0006396 // RNA processing // inferred from electronic annotation 0000175 // 3'-5'-exoribonuclease activity // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1386628_at BF550445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550445 /DB_XREF=gi:11660175 /DB_XREF=UI-R-A1-ei-c-09-0-UI.r1 /CLONE=UI-R-A1-ei-c-09-0-UI /FEA=EST /CNT=1 /TID=Rn.15457.2 /TIER=ConsEnd /STK=0 /UG=Rn.15457 /UG_TITLE=ESTs BF550445 1386632_at BF547901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547901 /DB_XREF=gi:11639008 /DB_XREF=UI-R-A0-bn-h-09-0-UI.r1 /CLONE=UI-R-A0-bn-h-09-0-UI /FEA=EST /CNT=1 /TID=Rn.16907.2 /TIER=ConsEnd /STK=0 /UG=Rn.16907 /UG_TITLE=ESTs BF547901 transmembrane protein 55A Tmem55a 362490 NM_001024900 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation 1386633_at BF549535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549535 /DB_XREF=gi:11659265 /DB_XREF=UI-R-C1-lf-a-04-0-UI.r1 /CLONE=UI-R-C1-lf-a-04-0-UI /FEA=EST /CNT=1 /TID=Rn.19125.2 /TIER=ConsEnd /STK=0 /UG=Rn.19125 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) BF549535 1386635_at BF542301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542301 /DB_XREF=gi:11633408 /DB_XREF=UI-R-C2-nn-f-10-0-UI.r1 /CLONE=UI-R-C2-nn-f-10-0-UI /FEA=EST /CNT=1 /TID=Rn.20203.2 /TIER=ConsEnd /STK=0 /UG=Rn.20203 /UG_TITLE=ESTs BF542301 1386637_at BF561454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561454 /DB_XREF=gi:11671184 /DB_XREF=UI-R-C0-hz-b-06-0-UI.r1 /CLONE=UI-R-C0-hz-b-06-0-UI /FEA=EST /CNT=1 /TID=Rn.20323.3 /TIER=ConsEnd /STK=0 /UG=Rn.20323 /UG_TITLE=ESTs BF561454 fibrinogen-like 2 Fgl2 84586 NM_053455 0007165 // signal transduction // inferred from electronic annotation /// 0007567 // parturition // traceable author statement 0005615 // extracellular space // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0008233 // peptidase activity // traceable author statement 1386639_at BF549828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549828 /DB_XREF=gi:11659558 /DB_XREF=UI-R-C2-nh-d-05-0-UI.r1 /CLONE=UI-R-C2-nh-d-05-0-UI /FEA=EST /CNT=1 /TID=Rn.20651.2 /TIER=ConsEnd /STK=0 /UG=Rn.20651 /UG_TITLE=ESTs BF549828 ring finger protein 121 Rnf121 308871 NM_001107540 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386641_at BF546770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546770 /DB_XREF=gi:11637877 /DB_XREF=UI-R-C1-lk-g-01-0-UI.r1 /CLONE=UI-R-C1-lk-g-01-0-UI /FEA=EST /CNT=1 /TID=Rn.21134.3 /TIER=ConsEnd /STK=0 /UG=Rn.21134 /UG_TITLE=ESTs BF546770 1386643_at BF552914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552914 /DB_XREF=gi:11662644 /DB_XREF=UI-R-C2-mz-g-04-0-UI.r1 /CLONE=UI-R-C2-mz-g-04-0-UI /FEA=EST /CNT=1 /TID=Rn.22019.2 /TIER=ConsEnd /STK=0 /UG=Rn.22019 /UG_TITLE=ESTs BF552914 fem-1 homolog b (C. elegans) Fem1b 315745 NM_001108157 0002070 // epithelial cell maturation // not recorded /// 0002070 // epithelial cell maturation // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0051438 // regulation of ubiquitin-protein ligase activity // inferred from electronic annotation /// 0051438 // regulation of ubiquitin-protein ligase activity // not recorded /// 0060442 // branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0060442 // branching involved in prostate gland morphogenesis // not recorded /// 0060743 // epithelial cell maturation involved in prostate gland development // inferred from electronic annotation /// 0060743 // epithelial cell maturation involved in prostate gland development // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005123 // death receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1386645_at AW916664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916664 /DB_XREF=gi:8082395 /DB_XREF=EST347968 /CLONE=RGIDT12 /FEA=EST /CNT=1 /TID=Rn.23292.2 /TIER=ConsEnd /STK=0 /UG=Rn.23292 /UG_TITLE=ESTs AW916664 Rab interacting lysosomal protein-like 1 Rilpl1 304469 NM_001191665 /// XM_001079000 /// XM_002724817 /// XM_222150 1386647_at BF563299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563299 /DB_XREF=gi:11673029 /DB_XREF=UI-R-BO1-aji-f-01-0-UI.r1 /CLONE=UI-R-BO1-aji-f-01-0-UI /FEA=EST /CNT=1 /TID=Rn.23807.3 /TIER=ConsEnd /STK=0 /UG=Rn.23807 /UG_TITLE=ESTs, Moderately similar to I37356 epithelial microtubule-associated protein, 115K (H.sapiens) BF563299 microtubule-associated protein 7 Map7 293016 NM_001106270 /// NM_001198638 0000902 // cell morphogenesis // not recorded /// 0001578 // microtubule bundle formation // not recorded /// 0006687 // glycosphingolipid metabolic process // not recorded /// 0006970 // response to osmotic stress // not recorded /// 0006997 // nucleus organization // not recorded /// 0007281 // germ cell development // not recorded /// 0007283 // spermatogenesis // not recorded /// 0008283 // cell proliferation // not recorded /// 0009566 // fertilization // not recorded /// 0032526 // response to retinoic acid // not recorded /// 0033327 // Leydig cell differentiation // not recorded /// 0035265 // organ growth // not recorded /// 0048872 // homeostasis of number of cells // not recorded /// 0060009 // Sertoli cell development // not recorded 0005886 // plasma membrane // not recorded 0005515 // protein binding // not recorded 1386648_at AW914996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW914996 /DB_XREF=gi:8080680 /DB_XREF=EST346300 /CLONE=RGIBN29 /FEA=EST /CNT=1 /TID=Rn.23812.3 /TIER=ConsEnd /STK=0 /UG=Rn.23812 /UG_TITLE=ESTs AW914996 DnaJ (Hsp40) homolog, subfamily C, member 6 Dnajc6 313409 NM_001107949 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0016044 // cellular membrane organization // not recorded 0031072 // heat shock protein binding // inferred from electronic annotation 1386653_at AW917558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917558 /DB_XREF=gi:8083311 /DB_XREF=EST348862 /CLONE=RGIEF29 /FEA=EST /CNT=1 /TID=Rn.24136.2 /TIER=ConsEnd /STK=0 /UG=Rn.24136 /UG_TITLE=ESTs AW917558 prickle homolog 2 (Drosophila) Prickle2 312563 NM_001107876 0045197 // establishment or maintenance of epithelial cell apical/basal polarity // not recorded 0005737 // cytoplasm // not recorded /// 0016327 // apicolateral plasma membrane // not recorded /// 0016328 // lateral plasma membrane // not recorded 0008270 // zinc ion binding // inferred from electronic annotation 1386656_at BF558870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558870 /DB_XREF=gi:11668600 /DB_XREF=UI-R-A1-dw-d-10-0-UI.r1 /CLONE=UI-R-A1-dw-d-10-0-UI /FEA=EST /CNT=1 /TID=Rn.24326.2 /TIER=ConsEnd /STK=0 /UG=Rn.24326 /UG_TITLE=ESTs BF558870 1386658_at BF544295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF544295 /DB_XREF=gi:11635402 /DB_XREF=UI-R-BT0-pq-d-02-0-UI.r1 /CLONE=UI-R-BT0-pq-d-02-0-UI /FEA=EST /CNT=1 /TID=Rn.27879.2 /TIER=ConsEnd /STK=0 /UG=Rn.27879 /UG_TITLE=ESTs BF544295 G protein-coupled receptor 45 Gpr45 301372 NM_001106906 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1386660_at BF565021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565021 /DB_XREF=gi:11674751 /DB_XREF=UI-R-BU0-amr-d-06-0-UI.r1 /CLONE=UI-R-BU0-amr-d-06-0-UI /FEA=EST /CNT=1 /TID=Rn.29093.2 /TIER=ConsEnd /STK=0 /UG=Rn.29093 /UG_TITLE=ESTs BF565021 1386662_at BF553981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF553981 /DB_XREF=gi:11663711 /DB_XREF=UI-R-C0-ig-g-02-0-UI.r1 /CLONE=UI-R-C0-ig-g-02-0-UI /FEA=EST /CNT=1 /TID=Rn.29107.2 /TIER=ConsEnd /STK=0 /UG=Rn.29107 /UG_TITLE=ESTs BF553981 1386664_at BF545895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545895 /DB_XREF=gi:11637002 /DB_XREF=UI-R-BT0-qf-c-01-0-UI.r1 /CLONE=UI-R-BT0-qf-c-01-0-UI /FEA=EST /CNT=1 /TID=Rn.29825.2 /TIER=ConsEnd /STK=0 /UG=Rn.29825 /UG_TITLE=ESTs BF545895 RasGEF domain family, member 1A Rasgef1a 312664 XM_001077186 /// XM_232315 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1386666_at AW918854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918854 /DB_XREF=gi:8084640 /DB_XREF=EST350158 /CLONE=RGIEZ51 /FEA=EST /CNT=1 /TID=Rn.39687.2 /TIER=ConsEnd /STK=0 /UG=Rn.39687 /UG_TITLE=ESTs, Highly similar to EYA2 MOUSE EYES ABSENT HOMOLOG 2 (M.musculus) AW918854 eyes absent homolog 2 (Drosophila) Eya2 156826 NM_130427 0006470 // protein dephosphorylation // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016576 // histone dephosphorylation // not recorded /// 0016576 // histone dephosphorylation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1386668_a_at BF565188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565188 /DB_XREF=gi:11674918 /DB_XREF=UI-R-BO1-ajt-d-04-0-UI.r1 /CLONE=UI-R-BO1-ajt-d-04-0-UI /FEA=EST /CNT=1 /TID=Rn.41958.2 /TIER=ConsEnd /STK=0 /UG=Rn.41958 /UG_TITLE=ESTs, Moderately similar to T00356 hypothetical protein KIAA0690 (H.sapiens) BF565188 similar to Protein KIAA0690 LOC679127 679127 XM_001054805 1386669_at BF565188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565188 /DB_XREF=gi:11674918 /DB_XREF=UI-R-BO1-ajt-d-04-0-UI.r1 /CLONE=UI-R-BO1-ajt-d-04-0-UI /FEA=EST /CNT=1 /TID=Rn.41958.2 /TIER=ConsEnd /STK=0 /UG=Rn.41958 /UG_TITLE=ESTs, Moderately similar to T00356 hypothetical protein KIAA0690 (H.sapiens) BF565188 similar to Protein KIAA0690 LOC679127 679127 XM_001054805 1386671_at AW921309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921309 /DB_XREF=gi:8087133 /DB_XREF=EST352613 /CLONE=RGIHQ83 /FEA=EST /CNT=1 /TID=Rn.42665.1 /TIER=ConsEnd /STK=0 /UG=Rn.42665 /UG_TITLE=ESTs AW921309 leucine rich repeat containing 19 Lrrc19 680478 NM_001109413 0005515 // protein binding // inferred from electronic annotation 1386673_at BF550808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550808 /DB_XREF=gi:11660538 /DB_XREF=UI-R-C0-jr-c-09-0-UI.r1 /CLONE=UI-R-C0-jr-c-09-0-UI /FEA=EST /CNT=1 /TID=Rn.43198.2 /TIER=ConsEnd /STK=0 /UG=Rn.43198 /UG_TITLE=ESTs BF550808 outer dense fiber of sperm tails 4 Odf4 303236 NM_001007670 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0001520 // outer dense fiber // inferred from electronic annotation /// 0001520 // outer dense fiber // not recorded /// 0009434 // microtubule-based flagellum // inferred from electronic annotation /// 0009434 // microtubule-based flagellum // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1386675_at BF543600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543600 /DB_XREF=gi:11634707 /DB_XREF=UI-R-C3-tu-a-10-0-UI.r1 /CLONE=UI-R-C3-tu-a-10-0-UI /FEA=EST /CNT=1 /TID=Rn.44977.3 /TIER=ConsEnd /STK=0 /UG=Rn.44977 /UG_TITLE=ESTs BF543600 1386677_at BF286666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF286666 /DB_XREF=gi:11217736 /DB_XREF=EST451257 /CLONE=RGIFR85 /FEA=EST /CNT=1 /TID=Rn.45188.2 /TIER=ConsEnd /STK=0 /UG=Rn.45188 /UG_TITLE=ESTs, Weakly similar to T46266 hypothetical protein DKFZp761A179.1 (H.sapiens) BF286666 leucine rich repeat containing 4 Lrrc4 641521 NM_001037336 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1386679_at BF562962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562962 /DB_XREF=gi:11672692 /DB_XREF=UI-R-BO0-aih-b-12-0-UI.r1 /CLONE=UI-R-BO0-aih-b-12-0-UI /FEA=EST /CNT=1 /TID=Rn.45492.2 /TIER=ConsEnd /STK=0 /UG=Rn.45492 /UG_TITLE=ESTs BF562962 1386681_at BF567176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567176 /DB_XREF=gi:11676906 /DB_XREF=UI-R-BO0-ahr-b-10-0-UI.r1 /CLONE=UI-R-BO0-ahr-b-10-0-UI /FEA=EST /CNT=1 /TID=Rn.45766.2 /TIER=ConsEnd /STK=0 /UG=Rn.45766 /UG_TITLE=ESTs BF567176 similar to hypothetical protein FLJ20014 LOC497934 497934 NM_001017474 0005515 // protein binding // not recorded 1386683_at BF562870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562870 /DB_XREF=gi:11672600 /DB_XREF=UI-R-BO0-aie-h-03-0-UI.r1 /CLONE=UI-R-BO0-aie-h-03-0-UI /FEA=EST /CNT=1 /TID=Rn.45838.2 /TIER=ConsEnd /STK=0 /UG=Rn.45838 /UG_TITLE=ESTs BF562870 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation 0000228 // nuclear chromosome // inferred from electronic annotation /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0070087 // chromo shadow domain binding // inferred from electronic annotation 1386685_at BF567998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567998 /DB_XREF=gi:11677728 /DB_XREF=UI-R-BO0-ahx-e-06-0-UI.r1 /CLONE=UI-R-BO0-ahx-e-06-0-UI /FEA=EST /CNT=1 /TID=Rn.45849.2 /TIER=ConsEnd /STK=0 /UG=Rn.45849 /UG_TITLE=ESTs, Highly similar to SACS_MOUSE Sacsin (M.musculus) BF567998 spastic ataxia of Charlevoix-Saguenay (sacsin) Sacs 305940 XM_001063390 /// XM_224256 0090084 // negative regulation of inclusion body assembly // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded 0005524 // ATP binding // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // not recorded /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051087 // chaperone binding // not recorded /// 0070628 // proteasome binding // not recorded 1386687_at BF563196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563196 /DB_XREF=gi:11672926 /DB_XREF=UI-R-BO1-ajg-d-08-0-UI.r1 /CLONE=UI-R-BO1-ajg-d-08-0-UI /FEA=EST /CNT=1 /TID=Rn.46194.3 /TIER=ConsEnd /STK=0 /UG=Rn.46194 /UG_TITLE=ESTs, Moderately similar to translational release factor 1 (H.sapiens) BF563196 similar to Peptide chain release factor 1, mitochondrial precursor (MRF-1) LOC686234 686234 XM_001073018 0006415 // translational termination // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0016149 // translation release factor activity, codon specific // inferred from electronic annotation 1386689_at BF563120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563120 /DB_XREF=gi:11672850 /DB_XREF=UI-R-BO1-ajf-a-02-0-UI.r1 /CLONE=UI-R-BO1-ajf-a-02-0-UI /FEA=EST /CNT=1 /TID=Rn.46346.2 /TIER=ConsEnd /STK=0 /UG=Rn.46346 /UG_TITLE=ESTs BF563120 hook homolog 2 (Drosophila) Hook2 304669 NM_001100562 /// XM_001070888 /// XM_239718 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0007032 // endosome organization // inferred from electronic annotation /// 0007032 // endosome organization // not recorded /// 0007040 // lysosome organization // inferred from electronic annotation /// 0007040 // lysosome organization // not recorded /// 0008333 // endosome to lysosome transport // inferred from electronic annotation /// 0008333 // endosome to lysosome transport // not recorded /// 0045022 // early endosome to late endosome transport // inferred from electronic annotation /// 0045022 // early endosome to late endosome transport // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0030897 // HOPS complex // inferred from electronic annotation /// 0030897 // HOPS complex // not recorded /// 0070695 // FHF complex // inferred from electronic annotation /// 0070695 // FHF complex // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1386691_at BF565191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565191 /DB_XREF=gi:11674921 /DB_XREF=UI-R-BO1-ajt-d-09-0-UI.r1 /CLONE=UI-R-BO1-ajt-d-09-0-UI /FEA=EST /CNT=1 /TID=Rn.46531.2 /TIER=ConsEnd /STK=0 /UG=Rn.46531 /UG_TITLE=ESTs BF565191 F-box protein 36 Fbxo36 363268 NM_001108804 1386693_at BF565397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565397 /DB_XREF=gi:11675127 /DB_XREF=UI-R-BO1-ajv-g-06-0-UI.r1 /CLONE=UI-R-BO1-ajv-g-06-0-UI /FEA=EST /CNT=1 /TID=Rn.46575.2 /TIER=ConsEnd /STK=0 /UG=Rn.46575 /UG_TITLE=ESTs, Highly similar to casein kinase (M.musculus) BF565397 casein kinase 1, epsilon Csnk1e 58822 NM_031617 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0042752 // regulation of circadian rhythm // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1386695_at BF565756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565756 /DB_XREF=gi:11675486 /DB_XREF=UI-R-BO1-ajq-a-03-0-UI.r1 /CLONE=UI-R-BO1-ajq-a-03-0-UI /FEA=EST /CNT=1 /TID=Rn.47315.2 /TIER=ConsEnd /STK=0 /UG=Rn.47315 /UG_TITLE=ESTs BF565756 1386697_at BF567897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567897 /DB_XREF=gi:11677627 /DB_XREF=UI-R-BO0-aho-g-03-0-UI.r1 /CLONE=UI-R-BO0-aho-g-03-0-UI /FEA=EST /CNT=1 /TID=Rn.47745.2 /TIER=ConsEnd /STK=0 /UG=Rn.47745 /UG_TITLE=ESTs BF567897 neurexophilin 1 Nxph1 25501 NM_012994 0005576 // extracellular region // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded 1386699_at BF563867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563867 /DB_XREF=gi:11673597 /DB_XREF=UI-R-BT1-aku-e-05-0-UI.r1 /CLONE=UI-R-BT1-aku-e-05-0-UI /FEA=EST /CNT=1 /TID=Rn.47763.2 /TIER=ConsEnd /STK=0 /UG=Rn.47763 /UG_TITLE=ESTs BF563867 dynein, axonemal, light intermediate chain 1 Dnali1 298524 NM_001031647 0030286 // dynein complex // inferred from electronic annotation 0003774 // motor activity // inferred from electronic annotation 1386701_at BF565038 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565038 /DB_XREF=gi:11674768 /DB_XREF=UI-R-BU0-ams-a-01-0-UI.r1 /CLONE=UI-R-BU0-ams-a-01-0-UI /FEA=EST /CNT=1 /TID=Rn.48004.2 /TIER=ConsEnd /STK=0 /UG=Rn.48004 /UG_TITLE=ESTs BF565038 1386703_at BF566738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF566738 /DB_XREF=gi:11676468 /DB_XREF=UI-R-BJ0p-afg-b-09-0-UI.r1 /CLONE=UI-R-BJ0p-afg-b-09-0-UI /FEA=EST /CNT=1 /TID=Rn.54333.2 /TIER=ConsEnd /STK=0 /UG=Rn.54333 /UG_TITLE=ESTs, Weakly similar to YB92_YEAST HYPOTHETICAL 27.6 KD PROTEIN IN THI2-ALG7 INTERGENIC REGION (S.cerevisiae) BF566738 1386705_at AW921938 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921938 /DB_XREF=gi:8087762 /DB_XREF=EST353242 /CLONE=RGIIJ50 /FEA=EST /CNT=1 /TID=Rn.56050.2 /TIER=ConsEnd /STK=0 /UG=Rn.56050 /UG_TITLE=ESTs AW921938 1386707_at BF553488 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF553488 /DB_XREF=gi:11663218 /DB_XREF=UI-R-C2p-oe-g-09-0-UI.r1 /CLONE=UI-R-C2p-oe-g-09-0-UI /FEA=EST /CNT=1 /TID=Rn.63985.2 /TIER=ConsEnd /STK=0 /UG=Rn.63985 /UG_TITLE=ESTs BF553488 1386709_at AW916606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916606 /DB_XREF=gi:8082335 /DB_XREF=EST347910 /CLONE=RGIDS32 /FEA=EST /CNT=1 /TID=Rn.64028.2 /TIER=ConsEnd /STK=0 /UG=Rn.64028 /UG_TITLE=ESTs AW916606 1386711_a_at BF566761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF566761 /DB_XREF=gi:11676491 /DB_XREF=UI-R-BJ0p-afi-f-11-0-UI.r1 /CLONE=UI-R-BJ0p-afi-f-11-0-UI /FEA=EST /CNT=1 /TID=Rn.66161.2 /TIER=ConsEnd /STK=0 /UG=Rn.66161 /UG_TITLE=ESTs BF566761 DnaJ (Hsp40) homolog, subfamily C, member 11 Dnajc11 362666 NM_001108694 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded 0031072 // heat shock protein binding // inferred from electronic annotation 1386716_at BF562934 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562934 /DB_XREF=gi:11672664 /DB_XREF=UI-R-BO0-aig-e-11-0-UI.r1 /CLONE=UI-R-BO0-aig-e-11-0-UI /FEA=EST /CNT=1 /TID=Rn.74460.2 /TIER=ConsEnd /STK=0 /UG=Rn.74460 /UG_TITLE=ESTs BF562934 1386718_at BF566188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF566188 /DB_XREF=gi:11675918 /DB_XREF=UI-R-BT1-aka-d-01-0-UI.r1 /CLONE=UI-R-BT1-aka-d-01-0-UI /FEA=EST /CNT=1 /TID=Rn.76347.2 /TIER=ConsEnd /STK=0 /UG=Rn.76347 /UG_TITLE=ESTs, Moderately similar to 2008147A protein RAKb (R.norvegicus) BF566188 aldo-keto reductase family 1, member C19 Akr1c19 307096 NM_001100576 0055114 // oxidation reduction // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation 1386720_at BF555392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555392 /DB_XREF=gi:11665122 /DB_XREF=UI-R-A1-ei-g-05-0-UI.r1 /CLONE=UI-R-A1-ei-g-05-0-UI /FEA=EST /CNT=1 /TID=Rn.8428.2 /TIER=ConsEnd /STK=0 /UG=Rn.8428 /UG_TITLE=ESTs, Weakly similar to MCT7 RAT MAST CELL PROTEASE 7 PRECURSOR (R.norvegicus) BF555392 transmembrane protease, serine 8 (intestinal) Tmprss8 287106 NM_199371 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0046658 // anchored to plasma membrane // non-traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from direct assay /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017080 // sodium channel regulator activity // inferred from direct assay 1386721_at BF560938 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF560938 /DB_XREF=gi:11670716 /DB_XREF=UI-R-E1-fi-d-11-0-UI.r1 /CLONE=UI-R-E1-fi-d-11-0-UI /FEA=EST /CNT=1 /TID=Rn.9581.2 /TIER=ConsEnd /STK=0 /UG=Rn.9581 /UG_TITLE=ESTs BF560938 zinc finger protein 503 Znf503 305687 NM_001107250 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1386724_at BF545117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545117 /DB_XREF=gi:11636224 /DB_XREF=UI-R-C2p-qu-a-12-0-UI.r1 /CLONE=UI-R-C2p-qu-a-12-0-UI /FEA=EST /CNT=1 /TID=Rn.38810.2 /TIER=ConsEnd /STK=0 /UG=Rn.38810 /UG_TITLE=ESTs BF545117 1386725_at BF566582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF566582 /DB_XREF=gi:11676312 /DB_XREF=UI-R-BO0-ago-c-02-0-UI.r1 /CLONE=UI-R-BO0-ago-c-02-0-UI /FEA=EST /CNT=1 /TID=Rn.45195.2 /TIER=ConsEnd /STK=0 /UG=Rn.45195 /UG_TITLE=ESTs BF566582 similar to DNA segment, Chr 19, ERATO Doi 386, expressed RGD1307934 293953 XM_001055620 /// XM_219870 0000166 // nucleotide binding // inferred from electronic annotation 1386726_at AI639197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639197 /DB_XREF=gi:4700231 /DB_XREF=rx02020s /CLONE=rx02020 /FEA=EST /CNT=1 /TID=Rn.43197.1 /TIER=ConsEnd /STK=0 /UG=Rn.43197 /UG_TITLE=EST AI639197 1386728_at BF545849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545849 /DB_XREF=gi:11636956 /DB_XREF=UI-R-BT0-qe-a-01-0-UI.r1 /CLONE=UI-R-BT0-qe-a-01-0-UI /FEA=EST /CNT=1 /TID=Rn.27895.2 /TIER=ConsEnd /STK=0 /UG=Rn.27895 /UG_TITLE=ESTs BF545849 Potassium voltage gated channel, Shal-related family, member 2 Kcnd2 65180 NM_031730 0001508 // regulation of action potential // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // traceable author statement /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0008076 // voltage-gated potassium channel complex // inferred from direct assay /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0005216 // ion channel activity // inferred from direct assay /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from direct assay /// 0005249 // voltage-gated potassium channel activity // inferred from mutant phenotype /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005250 // A-type (transient outward) potassium channel activity // inferred from mutant phenotype /// 0005267 // potassium channel activity // inferred from direct assay /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay 1386732_at BF558083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558083 /DB_XREF=gi:11667813 /DB_XREF=UI-R-C0-hk-b-12-0-UI.r1 /CLONE=UI-R-C0-hk-b-12-0-UI /FEA=EST /CNT=1 /TID=Rn.12497.2 /TIER=ConsEnd /STK=0 /UG=Rn.12497 /UG_TITLE=ESTs BF558083 Bardet-Biedl syndrome 1 Bbs1 309156 NM_001107569 0000226 // microtubule cytoskeleton organization // not recorded /// 0001895 // retina homeostasis // not recorded /// 0007608 // sensory perception of smell // not recorded /// 0008594 // photoreceptor cell morphogenesis // not recorded /// 0009296 // flagellum assembly // not recorded /// 0009566 // fertilization // not recorded /// 0016358 // dendrite development // not recorded /// 0021756 // striatum development // not recorded /// 0021766 // hippocampus development // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0030534 // adult behavior // not recorded /// 0035058 // sensory cilium assembly // not recorded /// 0035264 // multicellular organism growth // not recorded /// 0042048 // olfactory behavior // not recorded /// 0042384 // cilium assembly // not recorded /// 0042445 // hormone metabolic process // not recorded /// 0044255 // cellular lipid metabolic process // not recorded /// 0045444 // fat cell differentiation // not recorded /// 0045494 // photoreceptor cell maintenance // not recorded /// 0048854 // brain morphogenesis // not recorded /// 0060271 // cilium morphogenesis // not recorded /// 0060296 // regulation of cilium beat frequency involved in ciliary motility // not recorded 0031514 // motile secondary cilium // not recorded /// 0034464 // BBSome // not recorded 0005515 // protein binding // not recorded 1386733_at BF544390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF544390 /DB_XREF=gi:11635497 /DB_XREF=UI-R-BT0-pu-f-05-0-UI.r1 /CLONE=UI-R-BT0-pu-f-05-0-UI /FEA=EST /CNT=1 /TID=Rn.34549.2 /TIER=ConsEnd /STK=0 /UG=Rn.34549 /UG_TITLE=ESTs BF544390 1386739_at BF545627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545627 /DB_XREF=gi:11636734 /DB_XREF=UI-R-C2p-qn-g-12-0-UI.r1 /CLONE=UI-R-C2p-qn-g-12-0-UI /FEA=EST /CNT=1 /TID=Rn.33819.2 /TIER=ConsEnd /STK=0 /UG=Rn.33819 /UG_TITLE=ESTs, Highly similar to ETV4 MOUSE POLYOMAVIRUS ENHANCER ACTIVATOR 3 (M.musculus) BF545627 ets variant 4 Etv4 360635 NM_001108299 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008045 // motor axon guidance // inferred from electronic annotation /// 0008045 // motor axon guidance // not recorded /// 0033600 // negative regulation of mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0033600 // negative regulation of mammary gland epithelial cell proliferation // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0048863 // stem cell differentiation // inferred from electronic annotation /// 0048863 // stem cell differentiation // not recorded /// 0060444 // branching involved in mammary gland duct morphogenesis // not recorded /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060762 // regulation of branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060762 // regulation of branching involved in mammary gland duct morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1386740_at BF546625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546625 /DB_XREF=gi:11637732 /DB_XREF=UI-R-C1-lg-h-08-0-UI.r1 /CLONE=UI-R-C1-lg-h-08-0-UI /FEA=EST /CNT=1 /TID=Rn.52409.2 /TIER=ConsEnd /STK=0 /UG=Rn.52409 /UG_TITLE=ESTs, Highly similar to C215_HUMAN 258.1 KDA PROTEIN C21ORF5 (H.sapiens) BF546625 dopey family member 2 Dopey2 304077 NM_001191660 /// XM_001055500 /// XM_002724703 /// XM_002727866 /// XM_221640 1386742_at BF544387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF544387 /DB_XREF=gi:11635494 /DB_XREF=UI-R-BT0-pu-e-10-0-UI.r1 /CLONE=UI-R-BT0-pu-e-10-0-UI /FEA=EST /CNT=1 /TID=Rn.34980.2 /TIER=ConsEnd /STK=0 /UG=Rn.34980 /UG_TITLE=ESTs BF544387 1386744_x_at BF544149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF544149 /DB_XREF=gi:11635250 /DB_XREF=UI-R-E0-de-g-08-0-UI.r1 /CLONE=UI-R-E0-de-g-08-0-UI /FEA=EST /CNT=1 /TID=Rn.63834.1 /TIER=ConsEnd /STK=0 /UG=Rn.63834 /UG_TITLE=EST, Highly similar to S21345 retrovirus-related leucine zipper protein p40 - rat retrotransposon (R.norvegicus) BF544149 1386745_at BF523839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523839 /DB_XREF=gi:11631806 /DB_XREF=UI-R-Y0-acg-d-09-0-UI.r1 /CLONE=UI-R-Y0-acg-d-09-0-UI /FEA=EST /CNT=1 /TID=Rn.41399.2 /TIER=ConsEnd /STK=0 /UG=Rn.41399 /UG_TITLE=ESTs BF523839 1386749_at BF563236 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563236 /DB_XREF=gi:11672966 /DB_XREF=UI-R-BO1-ajh-d-10-0-UI.r1 /CLONE=UI-R-BO1-ajh-d-10-0-UI /FEA=EST /CNT=1 /TID=Rn.46418.2 /TIER=ConsEnd /STK=0 /UG=Rn.46418 /UG_TITLE=ESTs BF563236 endothelin-converting enzyme 2 Ece2 408243 NM_001002815 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016486 // peptide hormone processing // not recorded /// 0016486 // peptide hormone processing // traceable author statement 0030659 // cytoplasmic vesicle membrane // not recorded 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // traceable author statement /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1386750_at BF290862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290862 /DB_XREF=gi:11221932 /DB_XREF=EST455453 /CLONE=RGIIF24 /FEA=EST /CNT=1 /TID=Rn.49294.2 /TIER=ConsEnd /STK=0 /UG=Rn.49294 /UG_TITLE=ESTs BF290862 polycystic kidney disease 2-like 2 Pkd2l2 291683 NM_001106156 0016020 // membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1386751_x_at BF562032 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562032 /DB_XREF=gi:11671762 /DB_XREF=UI-R-E1-fk-g-12-0-UI.r1 /CLONE=UI-R-E1-fk-g-12-0-UI /FEA=EST /CNT=1 /TID=Rn.38608.2 /TIER=ConsEnd /STK=0 /UG=Rn.38608 /UG_TITLE=ESTs, Weakly similar to CYPH RAT PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A (R.norvegicus) BF562032 RAN binding protein 2 Ranbp2 294429 NM_001191604 /// XM_001053839 /// XM_002725863 /// XM_002728957 /// XM_215401 0006457 // protein folding // inferred from electronic annotation /// 0046907 // intracellular transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005643 // nuclear pore // not recorded /// 0005829 // cytosol // not recorded 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1386754_at BF521617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF521617 /DB_XREF=gi:11629584 /DB_XREF=UI-R-A1-ej-h-07-0-UI.r1 /CLONE=UI-R-A1-ej-h-07-0-UI /FEA=EST /CNT=1 /TID=Rn.8719.2 /TIER=ConsEnd /STK=0 /UG=Rn.8719 /UG_TITLE=ESTs BF521617 tripartite motif-containing 14 Trim14 313236 NM_001107934 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1386755_at BF552559 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552559 /DB_XREF=gi:11662289 /DB_XREF=UI-R-C1-ks-e-01-0-UI.r1 /CLONE=UI-R-C1-ks-e-01-0-UI /FEA=EST /CNT=1 /TID=Rn.19017.3 /TIER=ConsEnd /STK=0 /UG=Rn.19017 /UG_TITLE=ESTs BF552559 coiled-coil domain containing 91 Ccdc91 312863 NM_001014061 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1386762_at BF551439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551439 /DB_XREF=gi:11661169 /DB_XREF=UI-R-C0-ip-d-12-0-UI.r1 /CLONE=UI-R-C0-ip-d-12-0-UI /FEA=EST /CNT=1 /TID=Rn.18150.2 /TIER=ConsEnd /STK=0 /UG=Rn.18150 /UG_TITLE=ESTs BF551439 sorting nexin 18 Snx18 310097 NM_001107652 0007154 // cell communication // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1386764_at BF544958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF544958 /DB_XREF=gi:11636065 /DB_XREF=UI-R-C2p-rh-c-04-0-UI.r1 /CLONE=UI-R-C2p-rh-c-04-0-UI /FEA=EST /CNT=1 /TID=Rn.35524.3 /TIER=ConsEnd /STK=0 /UG=Rn.35524 /UG_TITLE=ESTs, Highly similar to T09226 A kinase anchor protein AKAP-KL isoform 2 - mouse (M.musculus) BF544958 A kinase (PRKA) anchor protein 2 Akap2 298024 NM_001011974 0007015 // actin filament organization // not recorded /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // not recorded /// 0008104 // protein localization // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0051018 // protein kinase A binding // not recorded 1386766_at BF522861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522861 /DB_XREF=gi:11630828 /DB_XREF=UI-R-Y0-acm-d-04-0-UI.r1 /CLONE=UI-R-Y0-acm-d-04-0-UI /FEA=EST /CNT=1 /TID=Rn.61006.2 /TIER=ConsEnd /STK=0 /UG=Rn.61006 /UG_TITLE=ESTs BF522861 1386769_at BF552679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552679 /DB_XREF=gi:11662409 /DB_XREF=UI-R-C0-iw-c-03-0-UI.r1 /CLONE=UI-R-C0-iw-c-03-0-UI /FEA=EST /CNT=1 /TID=Rn.36638.2 /TIER=ConsEnd /STK=0 /UG=Rn.36638 /UG_TITLE=ESTs BF552679 1386770_x_at AW920063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920063 /DB_XREF=gi:8085975 /DB_XREF=EST351471 /CLONE=RGIGS01 /FEA=EST /CNT=1 /TID=Rn.51625.2 /TIER=ConsEnd /STK=0 /UG=Rn.51625 /UG_TITLE=ESTs AW920063 potassium voltage-gated channel, Isk-related subfamily, gene 2 Kcne2 171138 NM_133603 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0008076 // voltage-gated potassium channel complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from direct assay /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // traceable author statement /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0015459 // potassium channel regulator activity // inferred from direct assay 1386773_at BF524794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF524794 /DB_XREF=gi:11632761 /DB_XREF=UI-R-AC1-xr-a-04-0-UI.r1 /CLONE=UI-R-AC1-xr-a-04-0-UI /FEA=EST /CNT=1 /TID=Rn.44261.2 /TIER=ConsEnd /STK=0 /UG=Rn.44261 /UG_TITLE=ESTs, Moderately similar to BTD_HUMAN BIOTINIDASE PRECURSOR {SUB 21-543 (H.sapiens) BF524794 biotinidase Btd 306262 NM_001012047 0006807 // nitrogen compound metabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0043204 // perikaryon // inferred from electronic annotation /// 0043204 // perikaryon // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded 0016787 // hydrolase activity // inferred from electronic annotation /// 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation /// 0016811 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides // inferred from electronic annotation /// 0047708 // biotinidase activity // inferred from electronic annotation 1386774_at BF551863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551863 /DB_XREF=gi:11661593 /DB_XREF=UI-R-Y0-lt-f-10-0-UI.r1 /CLONE=UI-R-Y0-lt-f-10-0-UI /FEA=EST /CNT=1 /TID=Rn.22596.2 /TIER=ConsEnd /STK=0 /UG=Rn.22596 /UG_TITLE=ESTs BF551863 family with sequence similarity 5, member B Fam5b 286895 NM_173115 0007399 // nervous system development // inferred from expression pattern /// 0045786 // negative regulation of cell cycle // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from mutant phenotype 1386777_at BF557764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557764 /DB_XREF=gi:11667494 /DB_XREF=UI-R-C0-hd-a-01-0-UI.r1 /CLONE=UI-R-C0-hd-a-01-0-UI /FEA=EST /CNT=1 /TID=Rn.12048.2 /TIER=ConsEnd /STK=0 /UG=Rn.12048 /UG_TITLE=ESTs, Moderately similar to T08766 hypothetical protein DKFZp586D211.1 (H.sapiens) BF557764 protection of telomeres 1A Pot1a 500054 NM_001024322 0000723 // telomere maintenance // inferred from electronic annotation /// 0007004 // telomere maintenance via telomerase // not recorded /// 0007004 // telomere maintenance via telomerase // inferred from electronic annotation /// 0016233 // telomere capping // inferred from electronic annotation /// 0016233 // telomere capping // not recorded /// 0032203 // telomere formation via telomerase // inferred from electronic annotation /// 0032203 // telomere formation via telomerase // not recorded /// 0032211 // negative regulation of telomere maintenance via telomerase // inferred from electronic annotation /// 0032211 // negative regulation of telomere maintenance via telomerase // not recorded /// 0032212 // positive regulation of telomere maintenance via telomerase // inferred from electronic annotation /// 0032212 // positive regulation of telomere maintenance via telomerase // not recorded /// 0032508 // DNA duplex unwinding // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // not recorded /// 0051096 // positive regulation of helicase activity // inferred from electronic annotation /// 0051096 // positive regulation of helicase activity // not recorded /// 0051276 // chromosome organization // not recorded /// 0051973 // positive regulation of telomerase activity // inferred from electronic annotation /// 0051973 // positive regulation of telomerase activity // not recorded /// 0051974 // negative regulation of telomerase activity // inferred from electronic annotation /// 0051974 // negative regulation of telomerase activity // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060383 // positive regulation of DNA strand elongation // inferred from electronic annotation /// 0060383 // positive regulation of DNA strand elongation // not recorded 0000781 // chromosome, telomeric region // not recorded /// 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0000783 // nuclear telomere cap complex // inferred from electronic annotation /// 0000783 // nuclear telomere cap complex // not recorded /// 0000784 // nuclear chromosome, telomeric region // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0010521 // telomerase inhibitor activity // inferred from electronic annotation /// 0010521 // telomerase inhibitor activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0017151 // DEAD/H-box RNA helicase binding // inferred from electronic annotation /// 0017151 // DEAD/H-box RNA helicase binding // not recorded /// 0043047 // single-stranded telomeric DNA binding // inferred from electronic annotation /// 0043047 // single-stranded telomeric DNA binding // not recorded 1386781_at BF544537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF544537 /DB_XREF=gi:11635644 /DB_XREF=UI-R-BT0-pz-b-06-0-UI.r1 /CLONE=UI-R-BT0-pz-b-06-0-UI /FEA=EST /CNT=1 /TID=Rn.28634.2 /TIER=ConsEnd /STK=0 /UG=Rn.28634 /UG_TITLE=ESTs BF544537 1386783_at BF552084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552084 /DB_XREF=gi:11661814 /DB_XREF=UI-R-C2p-oj-e-06-0-UI.r1 /CLONE=UI-R-C2p-oj-e-06-0-UI /FEA=EST /CNT=1 /TID=Rn.27300.2 /TIER=ConsEnd /STK=0 /UG=Rn.27300 /UG_TITLE=ESTs BF552084 Chondroitin sulfate synthase 3 Chsy3 291577 XM_001060886 /// XM_225912 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1386785_a_at BF559982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559982 /DB_XREF=gi:11669712 /DB_XREF=UI-R-C0-hb-f-01-0-UI.r1 /CLONE=UI-R-C0-hb-f-01-0-UI /FEA=EST /CNT=1 /TID=Rn.13342.3 /TIER=ConsEnd /STK=0 /UG=Rn.13342 /UG_TITLE=ESTs BF559982 1386786_at BF559982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559982 /DB_XREF=gi:11669712 /DB_XREF=UI-R-C0-hb-f-01-0-UI.r1 /CLONE=UI-R-C0-hb-f-01-0-UI /FEA=EST /CNT=1 /TID=Rn.13342.3 /TIER=ConsEnd /STK=0 /UG=Rn.13342 /UG_TITLE=ESTs BF559982 1386788_at C06771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:C06771 /DB_XREF=gi:1503547 /DB_XREF=C06771 /FEA=EST /CNT=1 /TID=Rn.76629.1 /TIER=ConsEnd /STK=0 /UG=Rn.76629 /LL=117085 /UG_GENE=Gcs1 /UG_TITLE=glucosidase 1 C06771 1386789_at C06771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:C06771 /DB_XREF=gi:1503547 /DB_XREF=C06771 /FEA=EST /CNT=1 /TID=Rn.76629.1 /TIER=ConsEnd /STK=0 /UG=Rn.76629 /LL=117085 /UG_GENE=Gcs1 /UG_TITLE=glucosidase 1 C06771 1386793_at BF552772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552772 /DB_XREF=gi:11662502 /DB_XREF=UI-R-C0-iz-h-07-0-UI.r1 /CLONE=UI-R-C0-iz-h-07-0-UI /FEA=EST /CNT=1 /TID=Rn.21555.2 /TIER=ConsEnd /STK=0 /UG=Rn.21555 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) BF552772 zinc finger protein 61 Zfp61 499094 NM_001017512 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386794_at BF544968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF544968 /DB_XREF=gi:11636075 /DB_XREF=UI-R-C2p-rh-d-12-0-UI.r1 /CLONE=UI-R-C2p-rh-d-12-0-UI /FEA=EST /CNT=1 /TID=Rn.39063.2 /TIER=ConsEnd /STK=0 /UG=Rn.39063 /UG_TITLE=ESTs, Weakly similar to LIS1 MOUSE PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB ALPHA SUBUNIT (R.norvegicus) BF544968 F-box and WD-40 domain protein 7 /// F-box and WD-40 domain protein 7, archipelago homolog (Drosophila)-like LOC100360914 /// LOC100365221 100360914 /// 100365221 XM_002729089 /// XR_085757 1386795_at BF291091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291091 /DB_XREF=gi:11222161 /DB_XREF=EST455682 /CLONE=RGIII57 /FEA=EST /CNT=1 /TID=Rn.66067.1 /TIER=ConsEnd /STK=0 /UG=Rn.66067 /UG_TITLE=EST BF291091 HEPACAM family member 2 Hepacam2 296846 NM_001106580 1386797_at BF557005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557005 /DB_XREF=gi:11666735 /DB_XREF=UI-R-C0-hm-c-11-0-UI.r1 /CLONE=UI-R-C0-hm-c-11-0-UI /FEA=EST /CNT=1 /TID=Rn.12540.3 /TIER=ConsEnd /STK=0 /UG=Rn.12540 /UG_TITLE=ESTs, Weakly similar to KE4_MOUSE HISTIDINE-RICH MEMBRANE PROTEIN KE4 (M.musculus) BF557005 solute carrier family 39 (zinc transporter), member 6 Slc39a6 291733 NM_001024745 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006829 // zinc ion transport // inferred from electronic annotation /// 0030001 // metal ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0046873 // metal ion transmembrane transporter activity // inferred from electronic annotation 1386798_at BF552068 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552068 /DB_XREF=gi:11661798 /DB_XREF=UI-R-C2p-oh-d-05-0-UI.r1 /CLONE=UI-R-C2p-oh-d-05-0-UI /FEA=EST /CNT=1 /TID=Rn.22659.2 /TIER=ConsEnd /STK=0 /UG=Rn.22659 /UG_TITLE=ESTs BF552068 1386800_at BF553757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF553757 /DB_XREF=gi:11663487 /DB_XREF=UI-R-C2p-oa-c-08-0-UI.r1 /CLONE=UI-R-C2p-oa-c-08-0-UI /FEA=EST /CNT=1 /TID=Rn.35140.2 /TIER=ConsEnd /STK=0 /UG=Rn.35140 /UG_TITLE=ESTs, Weakly similar to T32638 hypothetical protein F42G8.6 - Caenorhabditis elegans (C.elegans) BF553757 Molybdenum cofactor synthesis 3 Mocs3 311655 NM_001107804 0002098 // tRNA wobble uridine modification // not recorded /// 0006777 // Mo-molybdopterin cofactor biosynthetic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0018192 // enzyme active site formation via L-cysteine persulfide // not recorded /// 0034227 // tRNA thio-modification // not recorded 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004792 // thiosulfate sulfurtransferase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // not recorded /// 0016783 // sulfurtransferase activity // not recorded /// 0042292 // URM1 activating enzyme activity // not recorded 1386801_at BF547251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547251 /DB_XREF=gi:11638358 /DB_XREF=UI-R-C2p-ql-f-05-0-UI.r1 /CLONE=UI-R-C2p-ql-f-05-0-UI /FEA=EST /CNT=1 /TID=Rn.7789.2 /TIER=ConsEnd /STK=0 /UG=Rn.7789 /UG_TITLE=ESTs BF547251 Similar to neuron navigator 1 LOC685707 685707 XR_006273 /// XR_085598 1386804_at BF553434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF553434 /DB_XREF=gi:11663164 /DB_XREF=UI-R-C2p-nv-h-12-0-UI.r1 /CLONE=UI-R-C2p-nv-h-12-0-UI /FEA=EST /CNT=1 /TID=Rn.81000.2 /TIER=ConsEnd /STK=0 /UG=Rn.81000 /UG_TITLE=ESTs BF553434 1386805_at BF554446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554446 /DB_XREF=gi:11664176 /DB_XREF=UI-R-E1-ge-c-07-0-UI.r1 /CLONE=UI-R-E1-ge-c-07-0-UI /FEA=EST /CNT=1 /TID=Rn.40312.3 /TIER=ConsEnd /STK=0 /UG=Rn.40312 /UG_TITLE=ESTs BF554446 similar to TPR repeat-containing protein KIAA1043 LOC304558 304558 XM_001080633 /// XM_222260 0005488 // binding // inferred from electronic annotation 1386807_at BF556985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556985 /DB_XREF=gi:11666715 /DB_XREF=UI-R-C0-hl-g-09-0-UI.r1 /CLONE=UI-R-C0-hl-g-09-0-UI /FEA=EST /CNT=1 /TID=Rn.12718.2 /TIER=ConsEnd /STK=0 /UG=Rn.12718 /UG_TITLE=ESTs BF556985 wingless-type MMTV integration site family member 2 Wnt2 114487 XM_001059030 /// XM_575397 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0007223 // Wnt receptor signaling pathway, calcium modulating pathway // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030324 // lung development // inferred from expression pattern /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0055009 // atrial cardiac muscle tissue morphogenesis // not recorded /// 0060045 // positive regulation of cardiac muscle cell proliferation // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060317 // cardiac epithelial to mesenchymal transition // not recorded /// 0060492 // lung induction // inferred from electronic annotation /// 0060492 // lung induction // not recorded /// 0060501 // positive regulation of epithelial cell proliferation involved in lung morphogenesis // inferred from electronic annotation /// 0060501 // positive regulation of epithelial cell proliferation involved in lung morphogenesis // not recorded /// 0060716 // labyrinthine layer blood vessel development // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // not recorded /// 0061180 // mammary gland epithelium development // not recorded /// 0071560 // cellular response to transforming growth factor beta stimulus // not recorded /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0005109 // frizzled binding // inferred from electronic annotation /// 0005109 // frizzled binding // not recorded /// 0005125 // cytokine activity // not recorded 1386809_at BF558950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558950 /DB_XREF=gi:11668680 /DB_XREF=UI-R-A0-ba-a-11-0-UI.r1 /CLONE=UI-R-A0-ba-a-11-0-UI /FEA=EST /CNT=1 /TID=Rn.42323.2 /TIER=ConsEnd /STK=0 /UG=Rn.42323 /UG_TITLE=ESTs BF558950 1386811_at BF542615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542615 /DB_XREF=gi:11633722 /DB_XREF=UI-R-C2p-sd-b-08-0-UI.r1 /CLONE=UI-R-C2p-sd-b-08-0-UI /FEA=EST /CNT=1 /TID=Rn.35165.2 /TIER=ConsEnd /STK=0 /UG=Rn.35165 /UG_TITLE=ESTs BF542615 protein tyrosine phosphatase-like A domain containing 2 Ptplad2 362540 NM_001108669 1386813_at AA801454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA801454 /DB_XREF=gi:2864409 /DB_XREF=EST190951 /CLONE=RSPAA80 /FEA=EST /CNT=1 /TID=Rn.17169.2 /TIER=ConsEnd /STK=0 /UG=Rn.17169 /UG_TITLE=ESTs AA801454 1386817_at H32518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H32518 /DB_XREF=gi:977935 /DB_XREF=EST107706 /CLONE=RPCCB58 /FEA=EST /CNT=1 /TID=Rn.43928.2 /TIER=ConsEnd /STK=0 /UG=Rn.43928 /UG_TITLE=ESTs H32518 1386818_at AA848601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848601 /DB_XREF=gi:2936141 /DB_XREF=EST191361 /CLONE=RLUAC28 /FEA=EST /CNT=1 /TID=Rn.6371.2 /TIER=ConsEnd /STK=0 /UG=Rn.6371 /UG_TITLE=ESTs AA848601 1386820_at AA851099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851099 /DB_XREF=gi:2938639 /DB_XREF=EST193867 /CLONE=RPLAA55 /FEA=EST /CNT=1 /TID=Rn.79990.2 /TIER=ConsEnd /STK=0 /UG=Rn.79990 /UG_TITLE=ESTs, Moderately similar to cytochrome oxidase assembly factor (H.sapiens) AA851099 PET112-like (yeast) Pet112l 361974 XM_001066526 0006412 // translation // inferred from electronic annotation 0016874 // ligase activity // inferred from electronic annotation /// 0016884 // carbon-nitrogen ligase activity, with glutamine as amido-N-donor // inferred from electronic annotation 1386822_s_at BF288608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288608 /DB_XREF=gi:11219678 /DB_XREF=EST453199 /CLONE=RGIGV44 /FEA=EST /CNT=1 /TID=Rn.66042.1 /TIER=ConsEnd /STK=0 /UG=Rn.66042 /UG_TITLE=EST BF288608 Similar to RIKEN cDNA 1700016G05 RGD1311823 362346 NM_001108625 0006508 // proteolysis // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation 1386823_at BF545481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545481 /DB_XREF=gi:11636588 /DB_XREF=UI-R-C1-jw-c-08-0-UI.r1 /CLONE=UI-R-C1-jw-c-08-0-UI /FEA=EST /CNT=1 /TID=Rn.33347.2 /TIER=ConsEnd /STK=0 /UG=Rn.33347 /UG_TITLE=ESTs, Moderately similar to IRX2_HUMAN IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX-2 (H.sapiens) BF545481 iroquois homeobox 5 Irx5 498918 NM_001030044 0002027 // regulation of heart rate // inferred from electronic annotation /// 0002027 // regulation of heart rate // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0042551 // neuron maturation // inferred from electronic annotation /// 0042551 // neuron maturation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048468 // cell development // inferred from electronic annotation /// 0048468 // cell development // not recorded /// 0060040 // retinal bipolar neuron differentiation // inferred from electronic annotation /// 0060040 // retinal bipolar neuron differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1386827_at BF546343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546343 /DB_XREF=gi:11637444 /DB_XREF=UI-R-C2p-rk-c-05-0-UI.r1 /CLONE=UI-R-C2p-rk-c-05-0-UI /FEA=EST /CNT=1 /TID=Rn.39299.2 /TIER=ConsEnd /STK=0 /UG=Rn.39299 /UG_TITLE=ESTs BF546343 1386828_at BF557642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557642 /DB_XREF=gi:11667372 /DB_XREF=UI-R-C0-hx-b-02-0-UI.r1 /CLONE=UI-R-C0-hx-b-02-0-UI /FEA=EST /CNT=1 /TID=Rn.934.2 /TIER=ConsEnd /STK=0 /UG=Rn.934 /UG_TITLE=ESTs BF557642 RUN domain containing 1 Rundc1 303552 XM_001081465 1386829_at BF549319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549319 /DB_XREF=gi:11640426 /DB_XREF=UI-R-A0-aq-c-06-0-UI.r1 /CLONE=UI-R-A0-aq-c-06-0-UI /FEA=EST /CNT=1 /TID=Rn.37078.2 /TIER=ConsEnd /STK=0 /UG=Rn.37078 /UG_TITLE=ESTs BF549319 mitogen activated protein kinase kinase kinase 10 Map3k10 308463 NM_001191621 /// XM_001073032 /// XM_218368 0006468 // protein phosphorylation // not recorded /// 0008219 // cell death // inferred from mutant phenotype /// 0016310 // phosphorylation // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype 0003714 // transcription corepressor activity // not recorded /// 0004672 // protein kinase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1386831_at BF561330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561330 /DB_XREF=gi:11671060 /DB_XREF=UI-R-C0-hn-b-01-0-UI.r1 /CLONE=UI-R-C0-hn-b-01-0-UI /FEA=EST /CNT=1 /TID=Rn.40983.2 /TIER=ConsEnd /STK=0 /UG=Rn.40983 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) BF561330 1386832_a_at BF554138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554138 /DB_XREF=gi:11663868 /DB_XREF=UI-R-C1-ju-b-05-0-UI.r1 /CLONE=UI-R-C1-ju-b-05-0-UI /FEA=EST /CNT=1 /TID=Rn.20865.2 /TIER=ConsEnd /STK=0 /UG=Rn.20865 /UG_TITLE=ESTs BF554138 B-cell CLL/lymphoma 6, member B (zinc finger protein) Bcl6b 360551 NM_001108279 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1386833_at BF554138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554138 /DB_XREF=gi:11663868 /DB_XREF=UI-R-C1-ju-b-05-0-UI.r1 /CLONE=UI-R-C1-ju-b-05-0-UI /FEA=EST /CNT=1 /TID=Rn.20865.2 /TIER=ConsEnd /STK=0 /UG=Rn.20865 /UG_TITLE=ESTs BF554138 B-cell CLL/lymphoma 6, member B (zinc finger protein) Bcl6b 360551 NM_001108279 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1386836_at BF556285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556285 /DB_XREF=gi:11666021 /DB_XREF=UI-R-A1-en-a-12-0-UI.r1 /CLONE=UI-R-A1-en-a-12-0-UI /FEA=EST /CNT=1 /TID=Rn.15466.2 /TIER=ConsEnd /STK=0 /UG=Rn.15466 /UG_TITLE=ESTs, Weakly similar to ZF94_RAT ZINC FINGER PROTEIN 94 (ZFP-94) (ZINC FINGER PROTEIN Y1) (RLZF-Y) (R.norvegicus) BF556285 zinc finger protein 574 Znf574 308434 NM_001024258 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386837_x_at BF556285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556285 /DB_XREF=gi:11666021 /DB_XREF=UI-R-A1-en-a-12-0-UI.r1 /CLONE=UI-R-A1-en-a-12-0-UI /FEA=EST /CNT=1 /TID=Rn.15466.2 /TIER=ConsEnd /STK=0 /UG=Rn.15466 /UG_TITLE=ESTs, Weakly similar to ZF94_RAT ZINC FINGER PROTEIN 94 (ZFP-94) (ZINC FINGER PROTEIN Y1) (RLZF-Y) (R.norvegicus) BF556285 zinc finger protein 574 Znf574 308434 NM_001024258 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386838_at BF521886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF521886 /DB_XREF=gi:11629853 /DB_XREF=UI-R-BT0-pr-g-01-0-UI.r1 /CLONE=UI-R-BT0-pr-g-01-0-UI /FEA=EST /CNT=1 /TID=Rn.64417.2 /TIER=ConsEnd /STK=0 /UG=Rn.64417 /UG_TITLE=ESTs BF521886 similar to RIKEN cDNA 4930550C14 RGD1311251 315665 NM_001024265 1386841_at BF562309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562309 /DB_XREF=gi:11672039 /DB_XREF=UI-R-BS0-aoe-e-07-0-UI.r1 /CLONE=UI-R-BS0-aoe-e-07-0-UI /FEA=EST /CNT=1 /TID=Rn.55082.2 /TIER=ConsEnd /STK=0 /UG=Rn.55082 /UG_TITLE=ESTs, Weakly similar to GFI1 RAT ZINC FINGER PROTEIN GFI-1 (R.norvegicus) BF562309 Ng35 pseudogene Ng35 309613 NM_001134991 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386843_at BF551446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551446 /DB_XREF=gi:11661176 /DB_XREF=UI-R-C0-ip-g-08-0-UI.r1 /CLONE=UI-R-C0-ip-g-08-0-UI /FEA=EST /CNT=1 /TID=Rn.18156.2 /TIER=ConsEnd /STK=0 /UG=Rn.18156 /UG_TITLE=ESTs BF551446 Cd5 molecule-like Cd5l 310693 NM_001025685 0016020 // membrane // inferred from electronic annotation 0005044 // scavenger receptor activity // inferred from electronic annotation 1386846_at BG672730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672730 /DB_XREF=gi:13894829 /DB_XREF=DRNCOF08 /CLONE=DRNCOF08 /FEA=EST /CNT=1 /TID=Rn.74159.2 /TIER=ConsEnd /STK=0 /UG=Rn.74159 /UG_TITLE=ESTs BG672730 regulation of nuclear pre-mRNA domain containing 1A Rprd1a 291736 XM_001056597 /// XM_214609 1386847_at BF554661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554661 /DB_XREF=gi:11664391 /DB_XREF=UI-R-C0-jk-g-05-0-UI.r1 /CLONE=UI-R-C0-jk-g-05-0-UI /FEA=EST /CNT=1 /TID=Rn.21701.2 /TIER=ConsEnd /STK=0 /UG=Rn.21701 /UG_TITLE=ESTs, Highly similar to PT0183 protein-tyrosine kinase (R.norvegicus) BF554661 1386850_x_at AW921365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921365 /DB_XREF=gi:8087189 /DB_XREF=EST352669 /CLONE=RGIHT01 /FEA=EST /CNT=1 /TID=Rn.18893.3 /TIER=ConsEnd /STK=0 /UG=Rn.18893 /UG_TITLE=ESTs, Weakly similar to S40704 hypothetical protein C07A9.3 - Caenorhabditis elegans (C.elegans) AW921365 tousled-like kinase 1 Tlk1 311118 NM_001107734 0001672 // regulation of chromatin assembly or disassembly // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006886 // intracellular protein transport // not recorded /// 0023034 // intracellular signaling pathway // not recorded 0005634 // nucleus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1386851_a_at NM_019367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019367.1 /DB_XREF=gi:9506986 /GEN=Ppt2 /FEA=FLmRNA /CNT=22 /TID=Rn.40267.1 /TIER=FL+Stack /STK=18 /UG=Rn.40267 /LL=54398 /DEF=Rattus norvegicus palmitoyl-protein thioesterase 2 (Ppt2), mRNA. /PROD=palmitoyl-protein thioesterase 2 /FL=gb:AF061971.1 gb:NM_019367.1 NM_019367 palmitoyl-protein thioesterase 2 Ppt2 54398 NM_019367 0006464 // protein modification process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0005764 // lysosome // inferred from electronic annotation 0008474 // palmitoyl-(protein) hydrolase activity // inferred from electronic annotation /// 0008474 // palmitoyl-(protein) hydrolase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1386852_x_at D16554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D16554.1 /DB_XREF=gi:471155 /FEA=FLmRNA /CNT=170 /TID=Rn.1253.1 /TIER=FL+Stack /STK=108 /UG=Rn.1253 /DEF=Rat mRNA for polyubiquitin (four repetitive ubiquitins in tandem), complete cds. /PROD=polyubiquitin /FL=gb:D16554.1 D16554 ubiquitin B Ubb 192255 NM_138895 1386853_s_at BI296446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296446 /DB_XREF=gi:14960878 /DB_XREF=UI-R-CV2-cgr-c-09-0-UI.s1 /CLONE=UI-R-CV2-cgr-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.76390.1 /TIER=ConsEnd /STK=2 /UG=Rn.76390 /UG_TITLE=ESTs, Moderately similar to syntaxin 5a (Rattus norvegicus) (R.norvegicus) BI296446 syntaxin 5 Stx5 65134 NM_031704 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // not recorded 0000139 // Golgi membrane // inferred from mutant phenotype /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005783 // endoplasmic reticulum // inferred from mutant phenotype /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0033116 // ER-Golgi intermediate compartment membrane // inferred from electronic annotation 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005484 // SNAP receptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1386854_at AW535877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535877 /DB_XREF=gi:7178291 /DB_XREF=UI-R-BS0-aoc-d-04-0-UI.s1 /CLONE=UI-R-BS0-aoc-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.22409.1 /TIER=ConsEnd /STK=1 /UG=Rn.22409 /UG_TITLE=ESTs AW535877 sterile alpha motif domain containing 4B Samd4b 308473 NM_001107498 0005515 // protein binding // not recorded 1386855_at AA944136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944136 /DB_XREF=gi:3104052 /DB_XREF=EST199635 /CLONE=REMAB73 /FEA=EST /CNT=8 /TID=Rn.24116.1 /TIER=ConsEnd /STK=0 /UG=Rn.24116 /UG_TITLE=ESTs AA944136 1386856_a_at AA859633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859633 /DB_XREF=gi:4230178 /DB_XREF=UI-R-E0-bs-h-09-0-UI.s1 /CLONE=UI-R-E0-bs-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.22409.2 /TIER=ConsEnd /STK=1 /UG=Rn.22409 /UG_TITLE=ESTs AA859633 sterile alpha motif domain containing 4B Samd4b 308473 NM_001107498 0005515 // protein binding // not recorded 1386857_at NM_017166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017166.1 /DB_XREF=gi:8393695 /GEN=Lap18 /FEA=FLmRNA /CNT=69 /TID=Rn.555.1 /TIER=FL+Stack /STK=44 /UG=Rn.555 /LL=29332 /DEF=Rattus norvegicus Leukemia-associated cytosolic phosphoprotein stathmin (Lap18), mRNA. /PROD=leukemia-associated gene /FL=gb:NM_017166.1 gb:J04979.1 gb:M27876.1 NM_017166 stathmin 1 Stmn1 29332 NM_017166 0007019 // microtubule depolymerization // not recorded /// 0007019 // microtubule depolymerization // traceable author statement /// 0007052 // mitotic spindle organization // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0009615 // response to virus // not recorded /// 0023034 // intracellular signaling pathway // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031115 // negative regulation of microtubule polymerization // not recorded /// 0051272 // positive regulation of cellular component movement // not recorded 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005874 // microtubule // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0015631 // tubulin binding // not recorded 1386858_at NM_031101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031101.1 /DB_XREF=gi:13592054 /GEN=Rpl13 /FEA=FLmRNA /CNT=79 /TID=Rn.908.1 /TIER=FL+Stack /STK=43 /UG=Rn.908 /LL=81765 /DEF=Rattus norvegicus ribosomal protein L13 (Rpl13), mRNA. /PROD=ribosomal protein L13 /FL=gb:NM_031101.1 NM_031101 60S ribosomal protein L13-like /// ribosomal protein L13 LOC100360491 /// Rpl13 100360491 /// 81765 NM_031101 /// XM_002724993 /// XM_002728123 0006412 // translation // non-traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // non-traceable author statement /// 0022625 // cytosolic large ribosomal subunit // non-traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // non-traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1386859_at NM_022592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022592.1 /DB_XREF=gi:12018251 /GEN=Tkt /FEA=FLmRNA /CNT=59 /TID=Rn.5950.1 /TIER=FL+Stack /STK=40 /UG=Rn.5950 /LL=64524 /DEF=Rattus norvegicus transketolase (Tkt), mRNA. /PROD=transketolase /FL=gb:NM_022592.1 gb:U09256.1 NM_022592 transketolase Tkt 64524 NM_022592 0006098 // pentose-phosphate shunt // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009052 // pentose-phosphate shunt, non-oxidative branch // inferred from direct assay /// 0040008 // regulation of growth // inferred from electronic annotation /// 0040008 // regulation of growth // not recorded /// 0046390 // ribose phosphate biosynthetic process // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005777 // peroxisome // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // not recorded 0000287 // magnesium ion binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004802 // transketolase activity // inferred from direct assay /// 0004802 // transketolase activity // not recorded /// 0004802 // transketolase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0030976 // thiamin pyrophosphate binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048029 // monosaccharide binding // inferred from direct assay 1386860_at NM_012811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012811.1 /DB_XREF=gi:6981199 /GEN=Mfge8 /FEA=FLmRNA /CNT=53 /TID=Rn.3742.1 /TIER=FL+Stack /STK=38 /UG=Rn.3742 /LL=25277 /DEF=Rattus norvegicus O-acetyltransferase Milk fat glolbule membrane protein (Mfge8), mRNA. /PROD=o-acetyltransferase Milk fat glolbule membraneprotein /FL=gb:D84068.1 gb:NM_012811.1 NM_012811 milk fat globule-EGF factor 8 protein Mfge8 25277 NM_001040186 /// NM_012811 0001525 // angiogenesis // inferred from electronic annotation /// 0006910 // phagocytosis, recognition // inferred from electronic annotation /// 0006910 // phagocytosis, recognition // not recorded /// 0006911 // phagocytosis, engulfment // inferred from electronic annotation /// 0006911 // phagocytosis, engulfment // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007338 // single fertilization // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0050766 // positive regulation of phagocytosis // inferred from electronic annotation /// 0050766 // positive regulation of phagocytosis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0019897 // extrinsic to plasma membrane // inferred from electronic annotation /// 0019897 // extrinsic to plasma membrane // not recorded /// 0031012 // extracellular matrix // not recorded 0001786 // phosphatidylserine binding // inferred from electronic annotation /// 0001786 // phosphatidylserine binding // not recorded /// 0005178 // integrin binding // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0008429 // phosphatidylethanolamine binding // inferred from electronic annotation /// 0008429 // phosphatidylethanolamine binding // not recorded 1386861_at NM_022674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022674.1 /DB_XREF=gi:12083610 /GEN=H2afz /FEA=FLmRNA /CNT=73 /TID=Rn.3636.1 /TIER=FL+Stack /STK=37 /UG=Rn.3636 /LL=58940 /DEF=Rattus norvegicus H2A histone family, member Z (H2afz), mRNA. /PROD=H2A histone family, member Z /FL=gb:NM_022674.1 gb:M37584.1 NM_022674 H2A histone family, member Z H2afz 58940 NM_022674 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0001740 // Barr body // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation 1386862_at NM_013132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013132.1 /DB_XREF=gi:6978504 /GEN=Anx5 /FEA=FLmRNA /CNT=45 /TID=Rn.3318.1 /TIER=FL+Stack /STK=36 /UG=Rn.3318 /LL=25673 /DEF=Rattus norvegicus Annexin V (Anx5), mRNA. /PROD=annexin V /FL=gb:NM_013132.1 gb:M21730.1 NM_013132 annexin A5 Anxa5 25673 NM_013132 0007596 // blood coagulation // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010033 // response to organic substance // not recorded /// 0043065 // positive regulation of apoptosis // inferred from direct assay /// 0050819 // negative regulation of coagulation // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051260 // protein homooligomerization // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0014704 // intercalated disc // inferred from direct assay /// 0042383 // sarcolemma // inferred from direct assay /// 0042995 // cell projection // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // inferred from direct assay /// 0005544 // calcium-dependent phospholipid binding // inferred from mutant phenotype /// 0005544 // calcium-dependent phospholipid binding // not recorded /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation /// 0030971 // receptor tyrosine kinase binding // inferred from physical interaction /// 0043499 // eukaryotic cell surface binding // inferred from electronic annotation /// 0043499 // eukaryotic cell surface binding // not recorded 1386863_at NM_031527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031527.1 /DB_XREF=gi:13928709 /GEN=Ppp1ca /FEA=FLmRNA /CNT=41 /TID=Rn.2024.1 /TIER=FL+Stack /STK=36 /UG=Rn.2024 /LL=24668 /DEF=Rattus norvegicus Protein phosphatase type 1 alpha, catalytic subunit (Ppp1ca), mRNA. /PROD=protein phosphatase type 1 alpha, catalyticsubunit /FL=gb:NM_031527.1 gb:D90163.1 gb:D00859.1 NM_031527 protein phosphatase 1, catalytic subunit, alpha isoform Ppp1ca 24668 NM_031527 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005979 // regulation of glycogen biosynthetic process // inferred from direct assay /// 0005981 // regulation of glycogen catabolic process // inferred from direct assay /// 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // not recorded /// 0051301 // cell division // inferred from electronic annotation 0000164 // protein phosphatase type 1 complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0042587 // glycogen granule // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0070688 // MLL5-L complex // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0004721 // phosphoprotein phosphatase activity // not recorded /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // not recorded /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008599 // protein phosphatase type 1 regulator activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0043021 // ribonucleoprotein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1386864_at NM_053290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053290.1 /DB_XREF=gi:16757983 /GEN=Pgam1 /FEA=FLmRNA /CNT=56 /TID=Rn.1383.1 /TIER=FL+Stack /STK=35 /UG=Rn.1383 /LL=24642 /DEF=Rattus norvegicus Phosphoglycerate mutase 1 (Pgam1), mRNA. /PROD=phosphoglycerate mutase 1, Reserved symbol /FL=gb:NM_053290.1 gb:M76591.1 NM_053290 phosphoglycerate mutase 1 (brain) Pgam1 24642 NM_053290 0006096 // glycolysis // inferred from electronic annotation /// 0006110 // regulation of glycolysis // not recorded /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0043456 // regulation of pentose-phosphate shunt // not recorded /// 0045730 // respiratory burst // not recorded 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004082 // bisphosphoglycerate mutase activity // inferred from electronic annotation /// 0004083 // 2,3-bisphospho-D-glycerate 2-phosphohydrolase activity // inferred from electronic annotation /// 0004619 // phosphoglycerate mutase activity // inferred from direct assay /// 0004619 // phosphoglycerate mutase activity // not recorded /// 0004619 // phosphoglycerate mutase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0016868 // intramolecular transferase activity, phosphotransferases // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded 1386865_at NM_012946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012946.1 /DB_XREF=gi:6978788 /GEN=Ecm2 /FEA=FLmRNA /CNT=45 /TID=Rn.3091.1 /TIER=FL+Stack /STK=35 /UG=Rn.3091 /LL=25434 /DEF=Rattus norvegicus Extracellular matrix protein 2 (Ecm2), mRNA. /PROD=extracellular matrix protein 2 /FL=gb:NM_012946.1 gb:U27562.1 NM_012946 SPARC-like 1 (hevin) Sparcl1 25434 NM_012946 0007165 // signal transduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation 1386866_at NM_019376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019376.1 /DB_XREF=gi:9507244 /GEN=Ywhag /FEA=FLmRNA /CNT=58 /TID=Rn.29936.1 /TIER=FL+Stack /STK=34 /UG=Rn.29936 /LL=56010 /DEF=Rattus norvegicus 14-3-3 protein gamma-subtype (Ywhag), mRNA. /PROD=14-3-3 protein gamma-subtype /FL=gb:D17447.1 gb:NM_019376.1 NM_019376 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide Ywhag 56010 NM_019376 0006605 // protein targeting // inferred from electronic annotation /// 0006605 // protein targeting // not recorded /// 0007165 // signal transduction // traceable author statement /// 0045664 // regulation of neuron differentiation // not recorded /// 0045664 // regulation of neuron differentiation // inferred from sequence or structural similarity /// 0045664 // regulation of neuron differentiation // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // not recorded /// 0048167 // regulation of synaptic plasticity // inferred from sequence or structural similarity /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003779 // actin binding // inferred from sequence or structural similarity /// 0005080 // protein kinase C binding // not recorded /// 0005080 // protein kinase C binding // inferred from sequence or structural similarity /// 0005080 // protein kinase C binding // inferred from electronic annotation /// 0005159 // insulin-like growth factor receptor binding // not recorded /// 0005159 // insulin-like growth factor receptor binding // inferred from sequence or structural similarity /// 0005159 // insulin-like growth factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0030234 // enzyme regulator activity // traceable author statement /// 0030971 // receptor tyrosine kinase binding // inferred from physical interaction 1386867_at NM_133561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133561.1 /DB_XREF=gi:19424243 /GEN=Brp44l /FEA=FLmRNA /CNT=37 /TID=Rn.3718.1 /TIER=FL+Stack /STK=34 /UG=Rn.3718 /LL=171087 /DEF=Rattus norvegicus brain protein 44-like (Brp44l), mRNA. /PROD=brain protein 44-like /FL=gb:AF304429.1 gb:NM_133561.1 NM_133561 brain protein 44-like Brp44l 171087 NM_133561 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded 1386868_at NM_031109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031109.1 /DB_XREF=gi:13592068 /GEN=Rps10 /FEA=FLmRNA /CNT=50 /TID=Rn.3359.1 /TIER=FL+Stack /STK=33 /UG=Rn.3359 /LL=81773 /DEF=Rattus norvegicus ribosomal protein S10 (Rps10), mRNA. /PROD=ribosomal protein S10 /FL=gb:NM_031109.1 NM_031109 ribosomal protein S10 Rps10 81773 NM_031109 0000028 // ribosomal small subunit assembly // inferred from mutant phenotype /// 0006414 // translational elongation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from mutant phenotype /// 0005515 // protein binding // not recorded 1386869_at NM_012893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012893.1 /DB_XREF=gi:6978440 /GEN=Actg2 /FEA=FLmRNA /CNT=36 /TID=Rn.958.1 /TIER=FL+Stack /STK=33 /UG=Rn.958 /LL=25365 /DEF=Rattus norvegicus Actin, gamma 2, smooth muscle, enteric (Actg2), mRNA. /PROD=actin, gamma 2, smooth muscle, enteric /FL=gb:NM_012893.1 gb:M22323.1 NM_012893 actin, gamma 2, smooth muscle, enteric Actg2 25365 NM_012893 0006936 // muscle contraction // not recorded /// 0006936 // muscle contraction // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1386870_at BI275294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275294 /DB_XREF=gi:14887005 /DB_XREF=UI-R-CX0-bwr-g-09-0-UI.s1 /CLONE=UI-R-CX0-bwr-g-09-0-UI /FEA=FLmRNA /CNT=89 /TID=Rn.2204.1 /TIER=Stack /STK=14 /UG=Rn.2204 /LL=24957 /UG_GENE=Glul /UG_TITLE=Glutamine synthetase (glutamate-ammonia ligase) /FL=gb:M91652.1 gb:M29579.1 gb:NM_017073.1 BI275294 glutamate-ammonia ligase (glutamine synthetase) Glul 24957 NM_017073 0006536 // glutamate metabolic process // inferred from direct assay /// 0006542 // glutamine biosynthetic process // inferred from direct assay /// 0006542 // glutamine biosynthetic process // inferred from electronic annotation /// 0006807 // nitrogen compound metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0009749 // response to glucose stimulus // not recorded /// 0019676 // ammonia assimilation cycle // inferred from direct assay /// 0019676 // ammonia assimilation cycle // traceable author statement /// 0032024 // positive regulation of insulin secretion // inferred from mutant phenotype /// 0042133 // neurotransmitter metabolic process // traceable author statement /// 0050679 // positive regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype 0005622 // intracellular // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // not recorded /// 0019717 // synaptosome // inferred from direct assay /// 0042995 // cell projection // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004351 // glutamate decarboxylase activity // inferred from electronic annotation /// 0004356 // glutamate-ammonia ligase activity // inferred from direct assay /// 0004356 // glutamate-ammonia ligase activity // not recorded /// 0004356 // glutamate-ammonia ligase activity // traceable author statement /// 0004356 // glutamate-ammonia ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016595 // glutamate binding // inferred from direct assay /// 0016829 // lyase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from direct assay /// 0042802 // identical protein binding // not recorded /// 0045503 // dynein light chain binding // inferred from physical interaction 1386871_at NM_017165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017165.1 /DB_XREF=gi:8393471 /GEN=Gpx4 /FEA=FLmRNA /CNT=48 /TID=Rn.3647.1 /TIER=FL+Stack /STK=32 /UG=Rn.3647 /LL=29328 /DEF=Rattus norvegicus glutathione peroxidase 4 (Gpx4), mRNA. /PROD=glutathione peroxidase 4 /FL=gb:U37427.1 gb:L24896.1 gb:NM_017165.1 NM_017165 glutathione peroxidase 4 Gpx4 29328 NM_001039849 /// NM_017165 0006325 // chromatin organization // not recorded /// 0006325 // chromatin organization // inferred from sequence or structural similarity /// 0006325 // chromatin organization // inferred from electronic annotation /// 0006749 // glutathione metabolic process // inferred from direct assay /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007283 // spermatogenesis // inferred from sequence or structural similarity /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0042744 // hydrogen peroxide catabolic process // inferred from direct assay /// 0050727 // regulation of inflammatory response // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0004601 // peroxidase activity // inferred from electronic annotation /// 0004602 // glutathione peroxidase activity // inferred from direct assay /// 0004602 // glutathione peroxidase activity // not recorded /// 0004602 // glutathione peroxidase activity // inferred from sequence or structural similarity /// 0004602 // glutathione peroxidase activity // inferred from electronic annotation /// 0008430 // selenium binding // inferred from direct assay /// 0008430 // selenium binding // inferred from mutant phenotype /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0043295 // glutathione binding // inferred from direct assay /// 0047066 // phospholipid-hydroperoxide glutathione peroxidase activity // inferred from direct assay /// 0047066 // phospholipid-hydroperoxide glutathione peroxidase activity // inferred from electronic annotation 1386872_at BI296290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296290 /DB_XREF=gi:14960586 /DB_XREF=UI-R-DK0-cey-f-05-0-UI.s1 /CLONE=UI-R-DK0-cey-f-05-0-UI /FEA=FLmRNA /CNT=64 /TID=Rn.270.1 /TIER=Stack /STK=10 /UG=Rn.270 /LL=25151 /UG_GENE=Igf2r /UG_TITLE=Insulin-like growth factor 2 receptor /FL=gb:U59809.1 gb:NM_012756.1 BI296290 insulin-like growth factor 2 receptor Igf2r 25151 NM_012756 0001889 // liver development // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007283 // spermatogenesis // inferred from expression pattern /// 0009791 // post-embryonic development // inferred from expression pattern /// 0015031 // protein transport // traceable author statement /// 0031100 // organ regeneration // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from direct assay /// 0042981 // regulation of apoptosis // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype 0005615 // extracellular space // inferred from direct assay /// 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005641 // nuclear envelope lumen // inferred from electronic annotation /// 0005641 // nuclear envelope lumen // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0030139 // endocytic vesicle // not recorded /// 0030140 // trans-Golgi network transport vesicle // inferred from electronic annotation /// 0030140 // trans-Golgi network transport vesicle // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0001948 // glycoprotein binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // not recorded /// 0001965 // G-protein alpha-subunit binding // inferred from direct assay /// 0001972 // retinoic acid binding // inferred from direct assay /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from mutant phenotype /// 0005010 // insulin-like growth factor receptor activity // traceable author statement /// 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005520 // insulin-like growth factor binding // not recorded /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0005537 // mannose binding // inferred from electronic annotation /// 0005537 // mannose binding // not recorded /// 0019899 // enzyme binding // inferred from direct assay /// 0031995 // insulin-like growth factor II binding // inferred from direct assay /// 0051219 // phosphoprotein binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // not recorded 1386873_at NM_017184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017184.1 /DB_XREF=gi:8394462 /GEN=Tnni1 /FEA=FLmRNA /CNT=34 /TID=Rn.4035.1 /TIER=FL+Stack /STK=32 /UG=Rn.4035 /LL=29388 /DEF=Rattus norvegicus Troponin I, slow isoform (Tnni1), mRNA. /PROD=Troponin I, slow isoform /FL=gb:NM_017184.1 gb:J04993.1 NM_017184 troponin I type 1 (skeletal, slow) Tnni1 29388 NM_017184 0006937 // regulation of muscle contraction // inferred from direct assay /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded 0005861 // troponin complex // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation 1386874_at NM_017151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017151.1 /DB_XREF=gi:8394211 /GEN=Rps15 /FEA=FLmRNA /CNT=49 /TID=Rn.3391.1 /TIER=FL+Stack /STK=31 /UG=Rn.3391 /LL=29285 /DEF=Rattus norvegicus ribosomal protein S15 (Rps15), mRNA. /PROD=ribosomal protein S15 /FL=gb:NM_017151.1 NM_017151 ribosomal protein S15 Rps15 29285 NM_017151 0000028 // ribosomal small subunit assembly // inferred from mutant phenotype /// 0000056 // ribosomal small subunit export from nucleus // not recorded /// 0006364 // rRNA processing // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006412 // translation // traceable author statement /// 0006414 // translational elongation // not recorded /// 0042274 // ribosomal small subunit biogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0022627 // cytosolic small ribosomal subunit // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // inferred from mutant phenotype /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // traceable author statement /// 0005515 // protein binding // not recorded 1386875_a_at M19261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M19261.1 /DB_XREF=gi:203277 /FEA=FLmRNA /CNT=3 /TID=Rn.3428.2 /TIER=FL /STK=1 /UG=Rn.3428 /LL=83800 /UG_GENE=Clta /UG_TITLE=clathrin light chain /DEF=Rat clathrin light chain (LCA3) mRNA, complete cds. /FL=gb:M19261.1 M19261 clathrin, light chain (Lca) Clta 83800 NM_031974 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0006897 // endocytosis // inferred from expression pattern /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0005905 // coated pit // inferred from direct assay /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030118 // clathrin coat // inferred from direct assay /// 0030125 // clathrin vesicle coat // non-traceable author statement /// 0030130 // clathrin coat of trans-Golgi network vesicle // inferred from electronic annotation /// 0030132 // clathrin coat of coated pit // inferred from electronic annotation /// 0030132 // clathrin coat of coated pit // non-traceable author statement /// 0030136 // clathrin-coated vesicle // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030669 // clathrin-coated endocytic vesicle membrane // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay 1386876_at NM_012821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012821.1 /DB_XREF=gi:6978446 /GEN=Adcy6 /FEA=FLmRNA /CNT=39 /TID=Rn.3313.1 /TIER=FL /STK=2 /UG=Rn.3313 /LL=25289 /DEF=Rattus norvegicus Adenylyl cyclase 6 (Adcy6), mRNA. /PROD=adenylyl cyclase 6 /FL=gb:M96160.1 gb:L01115.1 gb:NM_012821.1 NM_012821 adenylate cyclase 6 Adcy6 25289 NM_012821 0006171 // cAMP biosynthetic process // inferred from direct assay /// 0006171 // cAMP biosynthetic process // inferred from mutant phenotype /// 0006171 // cAMP biosynthetic process // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0034199 // activation of protein kinase A activity // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031528 // microvillus membrane // inferred from direct assay /// 0042383 // sarcolemma // inferred from direct assay /// 0044424 // intracellular part // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004016 // adenylate cyclase activity // inferred from direct assay /// 0004016 // adenylate cyclase activity // inferred from mutant phenotype /// 0004016 // adenylate cyclase activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008294 // calcium- and calmodulin-responsive adenylate cyclase activity // inferred from direct assay /// 0008294 // calcium- and calmodulin-responsive adenylate cyclase activity // inferred from mutant phenotype /// 0016829 // lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386877_at NM_022952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022952.1 /DB_XREF=gi:12621127 /GEN=Ap2s1 /FEA=FLmRNA /CNT=37 /TID=Rn.37866.1 /TIER=FL+Stack /STK=31 /UG=Rn.37866 /LL=65046 /DEF=Rattus norvegicus clathrin-associated protein 17 (Ap2s1), mRNA. /PROD=clathrin-associated protein 17 /FL=gb:M37194.1 gb:U75917.1 gb:NM_022952.1 NM_022952 adaptor-related protein complex 2, sigma 1 subunit Ap2s1 65046 NM_022952 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0050690 // regulation of defense response to virus by virus // not recorded 0005794 // Golgi apparatus // traceable author statement /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030121 // AP-1 adaptor complex // traceable author statement /// 0030122 // AP-2 adaptor complex // inferred from direct assay /// 0030122 // AP-2 adaptor complex // traceable author statement /// 0030666 // endocytic vesicle membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 1386878_at AI104234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104234 /DB_XREF=gi:3708627 /DB_XREF=EST213523 /CLONE=RHEBZ14 /FEA=FLmRNA /CNT=47 /TID=Rn.6813.1 /TIER=Stack /STK=8 /UG=Rn.6813 /LL=25662 /UG_GENE=Igfbp2 /UG_TITLE=Insulin-like growth factor binding protein 2 /FL=gb:NM_013122.1 gb:M31672.1 gb:J04486.1 AI104234 low-density lipoprotein receptor-related protein 10 Lrp10 305880 NM_001037777 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // not recorded /// 0006869 // lipid transport // inferred from electronic annotation /// 0006869 // lipid transport // not recorded /// 0007165 // signal transduction // not recorded 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005041 // low-density lipoprotein receptor activity // inferred from electronic annotation /// 0005041 // low-density lipoprotein receptor activity // not recorded 1386879_at NM_031832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031832.1 /DB_XREF=gi:13929189 /GEN=Lgals3 /FEA=FLmRNA /CNT=43 /TID=Rn.764.1 /TIER=FL+Stack /STK=30 /UG=Rn.764 /LL=83781 /DEF=Rattus norvegicus lectin, galactose binding, soluble 3 (Lgals3), mRNA. /PROD=IgE binding protein /FL=gb:NM_031832.1 gb:J02962.1 NM_031832 lectin, galactoside-binding, soluble, 3 Lgals3 83781 NM_031832 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0031012 // extracellular matrix // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from electronic annotation /// 0019863 // IgE binding // inferred from electronic annotation 1386880_at NM_130433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130433.1 /DB_XREF=gi:18426865 /GEN=Acaa2 /FEA=FLmRNA /CNT=46 /TID=Rn.3786.1 /TIER=FL+Stack /STK=30 /UG=Rn.3786 /LL=170465 /DEF=Rattus norvegicus acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) (Acaa2), mRNA. /PROD=acetyl-Coenzyme A acyltransferase 2(mitochondrial 3-oxoacyl-Coenzyme A thiolase) /FL=gb:NM_130433.1 NM_130433 acetyl-Coenzyme A acyltransferase 2 Acaa2 170465 NM_130433 0006084 // acetyl-CoA metabolic process // inferred from direct assay /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // non-traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0003988 // acetyl-CoA C-acyltransferase activity // inferred from direct assay /// 0003988 // acetyl-CoA C-acyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation 1386881_at NM_012588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012588.1 /DB_XREF=gi:6981083 /GEN=Igfbp3 /FEA=FLmRNA /CNT=56 /TID=Rn.26369.1 /TIER=FL+Stack /STK=29 /UG=Rn.26369 /LL=24484 /DEF=Rattus norvegicus Insulin-like growth factor-binding protein (IGF-BP3) (Igfbp3), mRNA. /PROD=insulin-like growth factor-binding protein(IGF-BP3) /FL=gb:M33300.1 gb:M31837.1 gb:NM_012588.1 NM_012588 insulin-like growth factor binding protein 3 Igfbp3 24484 NM_012588 0001558 // regulation of cell growth // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0001933 // negative regulation of protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0014912 // negative regulation of smooth muscle cell migration // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from sequence or structural similarity /// 0045663 // positive regulation of myoblast differentiation // not recorded /// 0045663 // positive regulation of myoblast differentiation // inferred from sequence or structural similarity /// 0048662 // negative regulation of smooth muscle cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0016942 // insulin-like growth factor binding protein complex // inferred from mutant phenotype /// 0042567 // insulin-like growth factor ternary complex // inferred from mutant phenotype /// 0042568 // insulin-like growth factor binary complex // inferred from mutant phenotype 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0005520 // insulin-like growth factor binding // not recorded /// 0005520 // insulin-like growth factor binding // traceable author statement /// 0008160 // protein tyrosine phosphatase activator activity // not recorded /// 0008160 // protein tyrosine phosphatase activator activity // inferred from sequence or structural similarity /// 0019838 // growth factor binding // inferred from electronic annotation /// 0031994 // insulin-like growth factor I binding // inferred from physical interaction /// 0031994 // insulin-like growth factor I binding // not recorded /// 0031995 // insulin-like growth factor II binding // inferred from physical interaction 1386882_at NM_031318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031318.1 /DB_XREF=gi:13786137 /GEN=Tctex1 /FEA=FLmRNA /CNT=35 /TID=Rn.29901.1 /TIER=FL+Stack /STK=29 /UG=Rn.29901 /LL=83462 /DEF=Rattus norvegicus t-complex testis expressed 1 (Tctex1), mRNA. /PROD=t-complex testis expressed 1 /FL=gb:AB010119.1 gb:NM_031318.1 NM_031318 dynein light chain Tctex-type 1 Dynlt1 83462 NM_031318 0000132 // establishment of mitotic spindle orientation // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // traceable author statement /// 0007017 // microtubule-based process // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from sequence or structural similarity /// 0019060 // intracellular transport of viral proteins in host cell // inferred from electronic annotation /// 0019060 // intracellular transport of viral proteins in host cell // not recorded /// 0032314 // regulation of Rac GTPase activity // inferred from mutant phenotype /// 0048812 // neuron projection morphogenesis // inferred from mutant phenotype /// 0050768 // negative regulation of neurogenesis // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation /// 0051493 // regulation of cytoskeleton organization // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005868 // cytoplasmic dynein complex // inferred from sequence or structural similarity /// 0005868 // cytoplasmic dynein complex // traceable author statement /// 0005874 // microtubule // inferred from electronic annotation /// 0030286 // dynein complex // inferred from electronic annotation 0003774 // motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1386883_at NM_017344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017344.1 /DB_XREF=gi:8393495 /GEN=Gsk3a /FEA=FLmRNA /CNT=30 /TID=Rn.36807.1 /TIER=FL+Stack /STK=29 /UG=Rn.36807 /LL=50686 /DEF=Rattus norvegicus glycogen synthase kinase 3 alpha (Gsk3a), mRNA. /PROD=glycogen synthase kinase 3 alpha /FL=gb:NM_017344.1 NM_017344 glycogen synthase kinase 3 alpha Gsk3a 50686 NM_017344 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // non-traceable author statement /// 0008286 // insulin receptor signaling pathway // not recorded /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0010800 // positive regulation of peptidyl-threonine phosphorylation // inferred from electronic annotation /// 0010800 // positive regulation of peptidyl-threonine phosphorylation // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0032869 // cellular response to insulin stimulus // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033138 // positive regulation of peptidyl-serine phosphorylation // not recorded /// 0046325 // negative regulation of glucose import // inferred from electronic annotation /// 0046325 // negative regulation of glucose import // not recorded /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from electronic annotation /// 0046627 // negative regulation of insulin receptor signaling pathway // not recorded /// 0051348 // negative regulation of transferase activity // inferred from electronic annotation /// 0051348 // negative regulation of transferase activity // not recorded /// 0071285 // cellular response to lithium ion // not recorded /// 0071407 // cellular response to organic cyclic substance // not recorded 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // non-traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0034236 // protein kinase A catalytic subunit binding // inferred from physical interaction /// 0034236 // protein kinase A catalytic subunit binding // not recorded /// 0034236 // protein kinase A catalytic subunit binding // inferred from electronic annotation /// 0050321 // tau-protein kinase activity // inferred from electronic annotation 1386884_at NM_031721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031721.1 /DB_XREF=gi:13929011 /GEN=Prss11 /FEA=FLmRNA /CNT=36 /TID=Rn.2782.1 /TIER=FL+Stack /STK=28 /UG=Rn.2782 /LL=65164 /DEF=Rattus norvegicus protease, serine, 11 (Igf binding) (Prss11), mRNA. /PROD=protease, serine, 11 (Igf binding) /FL=gb:NM_031721.1 gb:AF179370.1 NM_031721 HtrA serine peptidase 1 Htra1 65164 NM_031721 0001558 // regulation of cell growth // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation 1386885_at NM_022594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022594.1 /DB_XREF=gi:12018255 /GEN=Ech1 /FEA=FLmRNA /CNT=32 /TID=Rn.6148.1 /TIER=FL+Stack /STK=28 /UG=Rn.6148 /LL=64526 /DEF=Rattus norvegicus Peroxisomal enoyl hydratase-like protein (Ech1), mRNA. /PROD=Peroxisomal enoyl hydratase-like protein /FL=gb:U08976.1 gb:NM_022594.1 NM_022594 enoyl coenzyme A hydratase 1, peroxisomal Ech1 64526 NM_022594 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005777 // peroxisome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386886_at NM_031812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031812.1 /DB_XREF=gi:13929153 /GEN=Cd164 /FEA=FLmRNA /CNT=43 /TID=Rn.3733.1 /TIER=FL+Stack /STK=27 /UG=Rn.3733 /LL=83689 /DEF=Rattus norvegicus endolyn (Cd164), mRNA. /PROD=endolyn /FL=gb:NM_031812.1 NM_031812 CD164 molecule, sialomucin Cd164 83689 NM_031812 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0007157 // heterophilic cell-cell adhesion // inferred from electronic annotation /// 0007157 // heterophilic cell-cell adhesion // not recorded /// 0007517 // muscle organ development // inferred from electronic annotation 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1386887_at NM_053586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053586.1 /DB_XREF=gi:16758361 /GEN=Cox5b /FEA=FLmRNA /CNT=32 /TID=Rn.6686.1 /TIER=FL+Stack /STK=27 /UG=Rn.6686 /LL=94194 /DEF=Rattus norvegicus cytochrome c oxidase subunit Vb (Cox5b), mRNA. /PROD=cytochrome c oxidase subunit Vb /FL=gb:D10952.1 gb:NM_053586.1 NM_053586 cytochrome c oxidase subunit Vb Cox5b 94194 NM_053586 0009725 // response to hormone stimulus // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005740 // mitochondrial envelope // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // traceable author statement /// 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386888_at NM_053857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053857.1 /DB_XREF=gi:16758723 /GEN=Eif4ebp1 /FEA=FLmRNA /CNT=34 /TID=Rn.11161.1 /TIER=FL+Stack /STK=26 /UG=Rn.11161 /LL=116636 /DEF=Rattus norvegicus eukaryotic translation initiation factor 4E binding protein 1 (Eif4ebp1), mRNA. /PROD=eukaryotic translation initiation factor 4Ebinding protein 1 /FL=gb:U05014.1 gb:NM_053857.1 NM_053857 eukaryotic translation initiation factor 4E binding protein 1 Eif4ebp1 116636 NM_053857 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0006417 // regulation of translation // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // inferred from direct assay /// 0008286 // insulin receptor signaling pathway // not recorded /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0031333 // negative regulation of protein complex assembly // inferred from mutant phenotype /// 0031929 // TOR signaling cascade // not recorded /// 0045931 // positive regulation of mitotic cell cycle // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // not recorded /// 0045947 // negative regulation of translational initiation // inferred from mutant phenotype /// 0045947 // negative regulation of translational initiation // not recorded /// 0045947 // negative regulation of translational initiation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0043234 // protein complex // inferred from mutant phenotype 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008190 // eukaryotic initiation factor 4E binding // inferred from mutant phenotype /// 0008190 // eukaryotic initiation factor 4E binding // inferred from physical interaction /// 0008190 // eukaryotic initiation factor 4E binding // not recorded /// 0008190 // eukaryotic initiation factor 4E binding // inferred from electronic annotation /// 0031369 // translation initiation factor binding // inferred from physical interaction 1386889_at BE107760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107760 /DB_XREF=gi:8499865 /DB_XREF=UI-R-CA0-aww-f-01-0-UI.s1 /CLONE=UI-R-CA0-aww-f-01-0-UI /FEA=FLmRNA /CNT=71 /TID=Rn.2627.1 /TIER=Stack /STK=10 /UG=Rn.2627 /LL=83792 /UG_GENE=Scd2 /UG_TITLE=stearoyl-CoA desaturase 2 /FL=gb:AB032243.1 gb:NM_031841.1 BE107760 stearoyl-CoA desaturase (delta-9-desaturase) Scd 83792 NM_031841 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // traceable author statement /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0042552 // myelination // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded 0004768 // stearoyl-CoA 9-desaturase activity // inferred from direct assay /// 0004768 // stearoyl-CoA 9-desaturase activity // traceable author statement /// 0004768 // stearoyl-CoA 9-desaturase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016717 // oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water // inferred from electronic annotation 1386890_at NM_031114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031114.1 /DB_XREF=gi:13592078 /GEN=S100A10 /FEA=FLmRNA /CNT=36 /TID=Rn.4083.1 /TIER=FL+Stack /STK=25 /UG=Rn.4083 /LL=81778 /DEF=Rattus norvegicus S-100 related protein, clone 42C (S100A10), mRNA. /PROD=S-100 related protein, clone 42C /FL=gb:J03627.1 gb:NM_031114.1 NM_031114 S100 calcium binding protein A10 S100a10 81778 NM_031114 0001558 // regulation of cell growth // non-traceable author statement /// 0045595 // regulation of cell differentiation // non-traceable author statement 0005783 // endoplasmic reticulum // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1386891_at NM_017236 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017236.1 /DB_XREF=gi:8393909 /GEN=Pbp /FEA=FLmRNA /CNT=49 /TID=Rn.29745.1 /TIER=FL+Stack /STK=25 /UG=Rn.29745 /LL=29542 /DEF=Rattus norvegicus phosphatidylethanolamine binding protein (Pbp), mRNA. /PROD=phosphatidylethanolamine binding protein /FL=gb:NM_017236.1 NM_017236 phosphatidylethanolamine binding protein 1 Pebp1 29542 NM_017236 0000165 // MAPKKK cascade // inferred from direct assay /// 0001505 // regulation of neurotransmitter levels // inferred from direct assay /// 0001933 // negative regulation of protein phosphorylation // inferred from mutant phenotype /// 0002026 // regulation of the force of heart contraction // inferred from direct assay /// 0006950 // response to stress // inferred from expression pattern /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0007286 // spermatid development // inferred from expression pattern /// 0007286 // spermatid development // traceable author statement /// 0007420 // brain development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0009408 // response to heat // inferred from expression pattern /// 0009611 // response to wounding // inferred from expression pattern /// 0009636 // response to toxin // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014823 // response to activity // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042755 // eating behavior // inferred from expression pattern /// 0043409 // negative regulation of MAPKKK cascade // inferred from mutant phenotype /// 0043950 // positive regulation of cAMP-mediated signaling // inferred from mutant phenotype /// 0045471 // response to ethanol // inferred from expression pattern /// 0045840 // positive regulation of mitosis // inferred from mutant phenotype /// 0048240 // sperm capacitation // not recorded /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from expression pattern /// 0051602 // response to electrical stimulus // inferred from expression pattern /// 0060409 // positive regulation of acetylcholine metabolic process // inferred from direct assay 0005615 // extracellular space // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay /// 0045177 // apical part of cell // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008289 // lipid binding // traceable author statement /// 0008289 // lipid binding // inferred from electronic annotation /// 0019900 // kinase binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0051019 // mitogen-activated protein kinase binding // inferred from direct assay 1386892_at NM_031975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031975.1 /DB_XREF=gi:14010874 /GEN=Ptms /FEA=FLmRNA /CNT=31 /TID=Rn.3609.1 /TIER=FL+Stack /STK=25 /UG=Rn.3609 /LL=83801 /DEF=Rattus norvegicus parathymosin (Ptms), mRNA. /PROD=parathymosin /FL=gb:NM_031975.1 NM_031975 parathymosin Ptms 83801 NM_031975 0005625 // soluble fraction // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay 0004857 // enzyme inhibitor activity // traceable author statement /// 0008270 // zinc ion binding // inferred from direct assay /// 0008270 // zinc ion binding // traceable author statement 1386893_at NM_017113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017113.1 /DB_XREF=gi:8393492 /GEN=Grn /FEA=FLmRNA /CNT=40 /TID=Rn.5820.1 /TIER=FL+Stack /STK=25 /UG=Rn.5820 /LL=29143 /DEF=Rattus norvegicus granulin (Grn), mRNA. /PROD=granulin /FL=gb:M97750.1 gb:NM_017113.1 NM_017113 granulin Grn 29143 NM_001145842 /// NM_017113 0001835 // blastocyst hatching // inferred from electronic annotation /// 0001835 // blastocyst hatching // not recorded /// 0007566 // embryo implantation // inferred from electronic annotation /// 0007566 // embryo implantation // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation 1386894_at NM_022229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022229.1 /DB_XREF=gi:11560023 /GEN=Hsp60 /FEA=FLmRNA /CNT=40 /TID=Rn.44658.1 /TIER=FL+Stack /STK=24 /UG=Rn.44658 /LL=63868 /DEF=Rattus norvegicus heat shock protein 60 (liver) (Hsp60), mRNA. /PROD=heat shock protein 60 (liver) /FL=gb:NM_022229.1 NM_022229 heat shock protein 1 (chaperonin) Hspd1 63868 NM_022229 0001666 // response to hypoxia // inferred from expression pattern /// 0002236 // detection of misfolded protein // inferred from direct assay /// 0002368 // B cell cytokine production // not recorded /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // not recorded /// 0002842 // positive regulation of T cell mediated immune response to tumor cell // not recorded /// 0006457 // protein folding // inferred from electronic annotation /// 0006458 // 'de novo' protein folding // inferred by curator /// 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0006919 // activation of caspase activity // not recorded /// 0006986 // response to unfolded protein // not recorded /// 0009408 // response to heat // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032727 // positive regulation of interferon-alpha production // not recorded /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0032733 // positive regulation of interleukin-10 production // not recorded /// 0032735 // positive regulation of interleukin-12 production // not recorded /// 0032755 // positive regulation of interleukin-6 production // not recorded /// 0033198 // response to ATP // inferred from expression pattern /// 0042026 // protein refolding // inferred from electronic annotation /// 0042026 // protein refolding // not recorded /// 0042100 // B cell proliferation // not recorded /// 0042110 // T cell activation // not recorded /// 0042113 // B cell activation // not recorded /// 0042220 // response to cocaine // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043032 // positive regulation of macrophage activation // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0044267 // cellular protein metabolic process // inferred from electronic annotation /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0048291 // isotype switching to IgG isotypes // not recorded /// 0050729 // positive regulation of inflammatory response // inferred from direct assay /// 0050821 // protein stabilization // not recorded /// 0050870 // positive regulation of T cell activation // not recorded /// 0051085 // chaperone mediated protein folding requiring cofactor // inferred from direct assay 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005905 // coated pit // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0019907 // cyclin-dependent protein kinase activating kinase holoenzyme complex // not recorded /// 0030061 // mitochondrial crista // inferred from direct assay /// 0030135 // coated vesicle // not recorded /// 0030141 // stored secretory granule // inferred from direct assay /// 0030141 // stored secretory granule // not recorded /// 0042588 // zymogen granule // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0044459 // plasma membrane part // not recorded /// 0045121 // membrane raft // inferred from direct assay /// 0046696 // lipopolysaccharide receptor complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0001530 // lipopolysaccharide binding // not recorded /// 0002020 // protease binding // inferred from physical interaction /// 0002039 // p53 binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0043498 // cell surface binding // not recorded /// 0043559 // insulin binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0051087 // chaperone binding // not recorded /// 0051787 // misfolded protein binding // inferred from physical interaction 1386895_at NM_053409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053409.1 /DB_XREF=gi:16758143 /GEN=Maged1 /FEA=FLmRNA /CNT=34 /TID=Rn.54596.1 /TIER=FL+Stack /STK=24 /UG=Rn.54596 /LL=84469 /DEF=Rattus norvegicus melanoma antigen, family D, 1 (Maged1), mRNA. /PROD=melanoma antigen, family D, 1 /FL=gb:AF217964.1 gb:NM_053409.1 NM_053409 melanoma antigen, family D, 1 Maged1 84469 NM_053409 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006915 // apoptosis // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043406 // positive regulation of MAP kinase activity // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0003713 // transcription coactivator activity // not recorded /// 0004705 // JUN kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1386896_at AF393783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF393783.1 /DB_XREF=gi:14994713 /FEA=FLmRNA /CNT=38 /TID=Rn.22762.1 /TIER=FL /STK=4 /UG=Rn.22762 /DEF=Rattus norvegicus src associated in mitosis SAM68 mRNA, complete cds. /PROD=src associated in mitosis SAM68 /FL=gb:NM_130405.1 gb:AF305619.1 gb:AF393783.1 AF393783 KH domain containing, RNA binding, signal transduction associated 1 Khdrbs1 117268 NM_130405 0000086 // G2/M transition of mitotic cell cycle // inferred from sequence or structural similarity /// 0006350 // transcription // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from direct assay /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0009966 // regulation of signal transduction // non-traceable author statement /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0046831 // regulation of RNA export from nucleus // not recorded /// 0046831 // regulation of RNA export from nucleus // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0070618 // Grb2-Sos complex // inferred from direct assay 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0005070 // SH3/SH2 adaptor activity // inferred from physical interaction /// 0005070 // SH3/SH2 adaptor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0017124 // SH3 domain binding // inferred from direct assay /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay 1386897_at NM_024363 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024363.1 /DB_XREF=gi:13242254 /GEN=Hrmt1l2 /FEA=FLmRNA /CNT=29 /TID=Rn.5870.1 /TIER=FL+Stack /STK=24 /UG=Rn.5870 /LL=60421 /DEF=Rattus norvegicus heterogeneous nuclear ribonucleoproteins methyltransferase-like 2 (S. cerevisiae) (Hrmt1l2), mRNA. /PROD=arginine N-methyltransferase 1 /FL=gb:U60882.1 gb:NM_024363.1 NM_024363 protein arginine methyltransferase 1 Prmt1 60421 NM_024363 0001701 // in utero embryonic development // not recorded /// 0006479 // protein methylation // inferred from direct assay /// 0006479 // protein methylation // not recorded /// 0006479 // protein methylation // inferred from electronic annotation /// 0018216 // peptidyl-arginine methylation // inferred from direct assay /// 0019919 // peptidyl-arginine methylation, to asymmetrical-dimethyl arginine // inferred from direct assay /// 0035247 // peptidyl-arginine omega-N-methylation // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008276 // protein methyltransferase activity // inferred from direct assay /// 0008276 // protein methyltransferase activity // inferred from electronic annotation /// 0008276 // protein methyltransferase activity // not recorded /// 0008469 // histone-arginine N-methyltransferase activity // inferred from direct assay /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // traceable author statement /// 0016275 // [cytochrome c]-arginine N-methyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0030519 // snoRNP binding // inferred from direct assay /// 0035241 // protein-arginine omega-N monomethyltransferase activity // inferred from direct assay /// 0035242 // protein-arginine omega-N asymmetric methyltransferase activity // inferred from direct assay 1386898_at NM_012966 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012966.1 /DB_XREF=gi:6981051 /GEN=Hspe1 /FEA=FLmRNA /CNT=46 /TID=Rn.1540.1 /TIER=FL+Stack /STK=23 /UG=Rn.1540 /LL=25462 /DEF=Rattus norvegicus Heat shock 10 kD protein 1 (chaperonin 10) (Hspe1), mRNA. /PROD=heat shock 10 kD protein 1 (chaperonin 10) /FL=gb:NM_012966.1 NM_012966 heat shock protein 1 (chaperonin 10) Hspe1 25462 NM_012966 0006457 // protein folding // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0051087 // chaperone binding // not recorded /// 0051087 // chaperone binding // inferred from sequence or structural similarity 1386899_at NM_012939 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012939.1 /DB_XREF=gi:6978720 /GEN=Ctsh /FEA=FLmRNA /CNT=33 /TID=Rn.1997.1 /TIER=FL+Stack /STK=23 /UG=Rn.1997 /LL=25425 /DEF=Rattus norvegicus Cathepsin H (Ctsh), mRNA. /PROD=cathepsin H /FL=gb:NM_012939.1 NM_012939 cathepsin H Ctsh 25425 NM_012939 0006508 // proteolysis // inferred from expression pattern /// 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0010634 // positive regulation of epithelial cell migration // inferred from electronic annotation /// 0010634 // positive regulation of epithelial cell migration // not recorded /// 0031648 // protein destabilization // inferred from electronic annotation /// 0031648 // protein destabilization // not recorded /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032526 // response to retinoic acid // not recorded /// 0060448 // dichotomous subdivision of terminal units involved in lung branching // inferred from electronic annotation /// 0060448 // dichotomous subdivision of terminal units involved in lung branching // not recorded 0005764 // lysosome // traceable author statement /// 0005764 // lysosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004197 // cysteine-type endopeptidase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030984 // kininogen binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction 1386900_at AI103695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103695 /DB_XREF=gi:4134196 /DB_XREF=EST212984 /CLONE=REMCF30 /FEA=FLmRNA /CNT=51 /TID=Rn.2119.1 /TIER=Stack /STK=12 /UG=Rn.2119 /LL=80881 /UG_GENE=RAMP4 /UG_TITLE=ribosome associated membrane protein 4 /FL=gb:AB018546.1 gb:AF100470.1 gb:NM_030835.1 AI103695 stress-associated endoplasmic reticulum protein 1 Serp1 80881 NM_030835 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006486 // protein glycosylation // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0010259 // multicellular organismal aging // inferred from electronic annotation /// 0010259 // multicellular organismal aging // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // not recorded /// 0032024 // positive regulation of insulin secretion // inferred from electronic annotation /// 0032024 // positive regulation of insulin secretion // not recorded /// 0045727 // positive regulation of translation // inferred from electronic annotation /// 0045727 // positive regulation of translation // not recorded /// 0046622 // positive regulation of organ growth // inferred from electronic annotation /// 0046622 // positive regulation of organ growth // not recorded /// 0048644 // muscle organ morphogenesis // inferred from electronic annotation /// 0048644 // muscle organ morphogenesis // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060124 // positive regulation of growth hormone secretion // inferred from electronic annotation /// 0060124 // positive regulation of growth hormone secretion // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1386901_at NM_031561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031561.1 /DB_XREF=gi:13928759 /GEN=Cd36 /FEA=FLmRNA /CNT=38 /TID=Rn.3790.1 /TIER=FL+Stack /STK=23 /UG=Rn.3790 /LL=29184 /DEF=Rattus norvegicus CD36 antigen (collagen type I receptor, thrombospondin receptor) (Cd36), mRNA. /PROD=CD36 antigen /FL=gb:AF072411.1 gb:NM_031561.1 gb:L19658.1 gb:AF113914.1 NM_031561 CD36 molecule (thrombospondin receptor) Cd36 29184 NM_031561 0001676 // long-chain fatty acid metabolic process // inferred from mutant phenotype /// 0001954 // positive regulation of cell-matrix adhesion // not recorded /// 0002221 // pattern recognition receptor signaling pathway // not recorded /// 0006631 // fatty acid metabolic process // inferred from direct assay /// 0006631 // fatty acid metabolic process // inferred from mutant phenotype /// 0006641 // triglyceride metabolic process // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006910 // phagocytosis, recognition // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007263 // nitric oxide mediated signal transduction // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from mutant phenotype /// 0010744 // positive regulation of macrophage derived foam cell differentiation // not recorded /// 0014823 // response to activity // inferred from expression pattern /// 0015908 // fatty acid transport // inferred from direct assay /// 0015908 // fatty acid transport // inferred from expression pattern /// 0015908 // fatty acid transport // inferred from mutant phenotype /// 0015909 // long-chain fatty acid transport // inferred from mutant phenotype /// 0015909 // long-chain fatty acid transport // traceable author statement /// 0015911 // plasma membrane long-chain fatty acid transport // not recorded /// 0016525 // negative regulation of angiogenesis // inferred from mutant phenotype /// 0019395 // fatty acid oxidation // inferred from mutant phenotype /// 0019915 // lipid storage // not recorded /// 0019934 // cGMP-mediated signaling // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032735 // positive regulation of interleukin-12 production // not recorded /// 0032755 // positive regulation of interleukin-6 production // not recorded /// 0032760 // positive regulation of tumor necrosis factor production // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0034383 // low-density lipoprotein particle clearance // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042953 // lipoprotein transport // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043277 // apoptotic cell clearance // not recorded /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0044130 // negative regulation of growth of symbiont in host // not recorded /// 0050830 // defense response to Gram-positive bacterium // not recorded /// 0060100 // positive regulation of phagocytosis, engulfment // not recorded /// 0060416 // response to growth hormone stimulus // inferred from expression pattern /// 0060907 // positive regulation of macrophage cytokine production // not recorded /// 0071221 // cellular response to bacterial lipopeptide // not recorded /// 0071222 // cellular response to lipopolysaccharide // not recorded /// 0071223 // cellular response to lipoteichoic acid // not recorded 0005622 // intracellular // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005901 // caveola // inferred from direct assay /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031092 // platelet alpha granule membrane // not recorded /// 0042383 // sarcolemma // inferred from direct assay /// 0045121 // membrane raft // not recorded /// 0045177 // apical part of cell // inferred from direct assay 0004872 // receptor activity // inferred from genetic interaction /// 0004872 // receptor activity // inferred from electronic annotation /// 0005041 // low-density lipoprotein receptor activity // not recorded /// 0005504 // fatty acid binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008035 // high-density lipoprotein binding // not recorded /// 0008289 // lipid binding // not recorded /// 0030169 // low-density lipoprotein binding // not recorded /// 0050431 // transforming growth factor beta binding // inferred from direct assay /// 0051636 // Gram-negative bacterial cell surface binding // not recorded /// 0051637 // Gram-positive bacterial cell surface binding // not recorded /// 0070053 // thrombospondin receptor activity // inferred from direct assay /// 0070892 // lipoteichoic acid receptor activity // not recorded 1386902_at NM_031355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031355.1 /DB_XREF=gi:13786203 /GEN=Vdac3 /FEA=FLmRNA /CNT=47 /TID=Rn.29769.1 /TIER=FL+Stack /STK=23 /UG=Rn.29769 /LL=83532 /DEF=Rattus norvegicus mitochondrial voltage dependent anion channel 3 (Vdac3), mRNA. /PROD=mitochondrial voltage dependent anion channel 3 /FL=gb:AF268469.1 gb:NM_031355.1 gb:AB039664.1 NM_031355 voltage-dependent anion channel 3 Vdac3 83532 NM_031355 0001662 // behavioral fear response // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006820 // anion transport // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007270 // nerve-nerve synaptic transmission // not recorded /// 0007612 // learning // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // traceable author statement /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019718 // rough microsome // inferred from direct assay /// 0046930 // pore complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008308 // voltage-gated anion channel activity // inferred from electronic annotation /// 0015288 // porin activity // inferred from electronic annotation 1386903_at NM_013191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013191.1 /DB_XREF=gi:6981497 /GEN=S100b /FEA=FLmRNA /CNT=57 /TID=Rn.8937.1 /TIER=FL+Stack /STK=22 /UG=Rn.8937 /LL=25742 /DEF=Rattus norvegicus S100 calcium-binding protein, beta (neural) (S100b), mRNA. /PROD=S100 calcium-binding protein, beta (neural) /FL=gb:M54919.1 gb:NM_013191.1 NM_013191 S100 calcium binding protein B S100b 25742 NM_013191 0007611 // learning or memory // not recorded /// 0007611 // learning or memory // inferred from sequence or structural similarity /// 0007611 // learning or memory // inferred from electronic annotation /// 0007613 // memory // inferred from electronic annotation /// 0007613 // memory // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0048168 // regulation of neuronal synaptic plasticity // inferred from electronic annotation /// 0048168 // regulation of neuronal synaptic plasticity // not recorded 0001726 // ruffle // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0005102 // receptor binding // inferred from physical interaction /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0042802 // identical protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048154 // S100 beta binding // not recorded /// 0048156 // tau protein binding // inferred from sequence or structural similarity /// 0048306 // calcium-dependent protein binding // not recorded /// 0050786 // RAGE receptor binding // not recorded 1386904_a_at AF007107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF007107.1 /DB_XREF=gi:2257954 /FEA=FLmRNA /CNT=1 /TID=Rn.1055.2 /TIER=FL /STK=1 /UG=Rn.1055 /LL=64001 /UG_GENE=Cyb5 /DEF=Rattus norvegicus soluble cytochrome b5 mRNA, complete cds. /PROD=cytochrome b5 /FL=gb:AF007107.1 AF007107 cytochrome b5 type A (microsomal) Cyb5a 64001 NM_022245 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0046686 // response to cadmium ion // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // not recorded /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004033 // aldo-keto reductase activity // not recorded /// 0009055 // electron carrier activity // traceable author statement /// 0019899 // enzyme binding // not recorded /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386905_at NM_013181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013181.1 /DB_XREF=gi:6981395 /GEN=Prkar1a /FEA=FLmRNA /CNT=30 /TID=Rn.10990.1 /TIER=FL+Stack /STK=22 /UG=Rn.10990 /LL=25725 /DEF=Rattus norvegicus Protein kinase, cAMP dependent, regulatory, type 1 (Prkar1a), mRNA. /PROD=protein kinase, cAMP dependent, regulatory, type1 /FL=gb:NM_013181.1 NM_013181 protein kinase, cAMP dependent regulatory, type I, alpha Prkar1a 25725 NM_013181 0001707 // mesoderm formation // not recorded /// 0001932 // regulation of protein phosphorylation // inferred from electronic annotation /// 0007143 // female meiosis // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0034199 // activation of protein kinase A activity // not recorded /// 0042325 // regulation of phosphorylation // not recorded /// 0045835 // negative regulation of meiosis // inferred from expression pattern /// 0045859 // regulation of protein kinase activity // inferred from direct assay /// 0050790 // regulation of catalytic activity // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005952 // cAMP-dependent protein kinase complex // inferred from direct assay /// 0005952 // cAMP-dependent protein kinase complex // inferred from electronic annotation /// 0031594 // neuromuscular junction // not recorded /// 0043234 // protein complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from direct assay /// 0008603 // cAMP-dependent protein kinase regulator activity // not recorded /// 0008603 // cAMP-dependent protein kinase regulator activity // traceable author statement /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0030552 // cAMP binding // inferred from direct assay /// 0030552 // cAMP binding // inferred from electronic annotation /// 0034236 // protein kinase A catalytic subunit binding // inferred by curator 1386906_a_at AF180526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF180526.1 /DB_XREF=gi:6010653 /FEA=FLmRNA /CNT=29 /TID=Rn.2106.1 /TIER=FL /STK=1 /UG=Rn.2106 /LL=83788 /UG_GENE=LOC83788 /DEF=Rattus norvegicus E-septin short form mRNA, complete cds. /PROD=E-septin short form /FL=gb:NM_031837.1 gb:AF180526.1 gb:AF180525.1 gb:AF170253.1 AF180526 septin 9 Sept9 83788 NM_001113497 /// NM_031837 /// NM_176856 0007049 // cell cycle // inferred from electronic annotation /// 0051291 // protein heterooligomerization // not recorded /// 0051291 // protein heterooligomerization // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0001725 // stress fiber // not recorded /// 0001725 // stress fiber // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1386907_at NM_012949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012949.1 /DB_XREF=gi:6978810 /GEN=Eno3 /FEA=FLmRNA /CNT=25 /TID=Rn.3443.1 /TIER=FL+Stack /STK=22 /UG=Rn.3443 /LL=25438 /DEF=Rattus norvegicus Muscle specific enolase (beta beta enolose) (Eno3), mRNA. /PROD=muscle specific enolase (beta beta enolose) (twosplicing products) /FL=gb:NM_012949.1 NM_012949 enolase 3, beta, muscle Eno3 25438 NM_012949 0006096 // glycolysis // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043403 // skeletal muscle tissue regeneration // inferred from expression pattern 0000015 // phosphopyruvate hydratase complex // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004634 // phosphopyruvate hydratase activity // inferred from direct assay /// 0004634 // phosphopyruvate hydratase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay 1386908_at NM_022278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022278.1 /DB_XREF=gi:11560104 /GEN=Glrx1 /FEA=FLmRNA /CNT=25 /TID=Rn.1484.1 /TIER=FL+Stack /STK=22 /UG=Rn.1484 /LL=64045 /DEF=Rattus norvegicus glutaredoxin 1 (thioltransferase) (Glrx1), mRNA. /PROD=glutaredoxin 1 (thioltransferase) /FL=gb:AF319950.1 gb:AF167981.3 gb:NM_022278.1 NM_022278 glutaredoxin 1 Glrx1 64045 NM_022278 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0015038 // glutathione disulfide oxidoreductase activity // not recorded /// 0047485 // protein N-terminus binding // not recorded 1386909_a_at AF268467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF268467.1 /DB_XREF=gi:8810244 /GEN=VDAC1 /FEA=FLmRNA /CNT=40 /TID=Rn.54594.1 /TIER=FL /STK=2 /UG=Rn.54594 /LL=83529 /DEF=Rattus norvegicus voltage-dependent anion channel 1 (VDAC1) mRNA, complete cds. /PROD=voltage-dependent anion channel 1 /FL=gb:AB039662.1 gb:AF268467.1 gb:NM_031353.1 AF268467 voltage-dependent anion channel 1 Vdac1 83529 NM_031353 0001662 // behavioral fear response // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006820 // anion transport // inferred from electronic annotation /// 0006851 // mitochondrial calcium ion transport // inferred from direct assay /// 0006915 // apoptosis // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007270 // nerve-nerve synaptic transmission // not recorded /// 0007612 // learning // not recorded /// 0034765 // regulation of ion transmembrane transport // not recorded /// 0044070 // regulation of anion transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded /// 0046930 // pore complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005253 // anion channel activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008308 // voltage-gated anion channel activity // inferred from direct assay /// 0008308 // voltage-gated anion channel activity // not recorded /// 0008308 // voltage-gated anion channel activity // inferred from sequence or structural similarity /// 0008308 // voltage-gated anion channel activity // inferred from electronic annotation /// 0015288 // porin activity // inferred from electronic annotation 1386910_a_at AF311054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF311054.1 /DB_XREF=gi:12247525 /GEN=Apex /FEA=mRNA /CNT=1 /TID=Rn.5949.2 /TIER=ConsEnd /STK=0 /UG=Rn.5949 /LL=79116 /DEF=Rattus norvegicus APEX (Apex) mRNA, partial cds, alternatively spliced. /PROD=APEX AF311054 APEX nuclease (multifunctional DNA repair enzyme) 1 Apex1 79116 NM_024148 0006281 // DNA repair // non-traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007568 // aging // inferred from direct assay /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014912 // negative regulation of smooth muscle cell migration // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0045454 // cell redox homeostasis // not recorded /// 0045454 // cell redox homeostasis // non-traceable author statement /// 0045750 // positive regulation of S phase of mitotic cell cycle // inferred from mutant phenotype /// 0051101 // regulation of DNA binding // not recorded /// 0051591 // response to cAMP // inferred from expression pattern /// 0070301 // cellular response to hydrogen peroxide // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005813 // centrosome // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0003713 // transcription coactivator activity // inferred from sequence or structural similarity /// 0003906 // DNA-(apurinic or apyrimidinic site) lyase activity // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // not recorded /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004521 // endoribonuclease activity // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008081 // phosphoric diester hydrolase activity // not recorded /// 0016491 // oxidoreductase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from sequence or structural similarity /// 0016829 // lyase activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // traceable author statement /// 0032403 // protein complex binding // inferred from physical interaction /// 0046872 // metal ion binding // not recorded /// 0046872 // metal ion binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1386911_at NM_012505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012505.1 /DB_XREF=gi:6978544 /GEN=Atp1a2 /FEA=FLmRNA /CNT=33 /TID=Rn.1042.1 /TIER=FL+Stack /STK=21 /UG=Rn.1042 /LL=24212 /DEF=Rattus norvegicus ATPase, Na+K+ transporting, alpha 2 polypeptide (Atp1a2), mRNA. /PROD=ATPase, Na+K+ transporting, alpha 2 polypeptide /FL=gb:M14512.1 gb:NM_012505.1 NM_012505 ATPase, Na+/K+ transporting, alpha 2 polypeptide Atp1a2 24212 NM_012505 0001504 // neurotransmitter uptake // inferred from electronic annotation /// 0001504 // neurotransmitter uptake // not recorded /// 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002026 // regulation of the force of heart contraction // not recorded /// 0002087 // regulation of respiratory gaseous exchange by neurological system process // inferred from electronic annotation /// 0002087 // regulation of respiratory gaseous exchange by neurological system process // not recorded /// 0006200 // ATP catabolic process // traceable author statement /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from direct assay /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006937 // regulation of muscle contraction // not recorded /// 0006937 // regulation of muscle contraction // inferred from electronic annotation /// 0006940 // regulation of smooth muscle contraction // inferred from electronic annotation /// 0006940 // regulation of smooth muscle contraction // not recorded /// 0006942 // regulation of striated muscle contraction // not recorded /// 0006942 // regulation of striated muscle contraction // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008217 // regulation of blood pressure // not recorded /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0008542 // visual learning // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0015672 // monovalent inorganic cation transport // inferred from electronic annotation /// 0015988 // energy coupled proton transport, against electrochemical gradient // traceable author statement /// 0015991 // ATP hydrolysis coupled proton transport // inferred from mutant phenotype /// 0019229 // regulation of vasoconstriction // inferred from electronic annotation /// 0019229 // regulation of vasoconstriction // not recorded /// 0040011 // locomotion // inferred from electronic annotation /// 0040011 // locomotion // not recorded /// 0045822 // negative regulation of heart contraction // inferred from electronic annotation /// 0045822 // negative regulation of heart contraction // not recorded /// 0045988 // negative regulation of striated muscle contraction // inferred from electronic annotation /// 0045988 // negative regulation of striated muscle contraction // not recorded /// 0051481 // reduction of cytosolic calcium ion concentration // inferred from electronic annotation /// 0051481 // reduction of cytosolic calcium ion concentration // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005890 // sodium:potassium-exchanging ATPase complex // inferred from direct assay /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042383 // sarcolemma // not recorded /// 0043005 // neuron projection // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005391 // sodium:potassium-exchanging ATPase activity // inferred from direct assay /// 0005391 // sodium:potassium-exchanging ATPase activity // not recorded /// 0005391 // sodium:potassium-exchanging ATPase activity // traceable author statement /// 0005391 // sodium:potassium-exchanging ATPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from electronic annotation /// 0015077 // monovalent inorganic cation transmembrane transporter activity // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0019829 // cation-transporting ATPase activity // inferred from mutant phenotype /// 0030955 // potassium ion binding // traceable author statement /// 0031402 // sodium ion binding // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 1386912_at NM_019237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019237.1 /DB_XREF=gi:9506952 /GEN=Pcolce /FEA=FLmRNA /CNT=29 /TID=Rn.2910.1 /TIER=FL+Stack /STK=21 /UG=Rn.2910 /LL=29569 /DEF=Rattus norvegicus procollagen C-proteinase enhancer protein (Pcolce), mRNA. /PROD=procollagen C-proteinase enhancer protein /FL=gb:U94710.1 gb:AF016503.1 gb:AB008534.1 gb:NM_019237.1 NM_019237 procollagen C-endopeptidase enhancer Pcolce 29569 NM_019237 0006508 // proteolysis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0005515 // protein binding // inferred from electronic annotation 1386913_at NM_019358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019358.1 /DB_XREF=gi:9506742 /GEN=Gp38 /FEA=FLmRNA /CNT=23 /TID=Rn.794.1 /TIER=FL+Stack /STK=21 /UG=Rn.794 /LL=54320 /DEF=Rattus norvegicus glycoprotein 38 (Gp38), mRNA. /PROD=glycoprotein 38 /FL=gb:NM_019358.1 gb:U07797.1 gb:U96449.1 gb:U32115.1 NM_019358 podoplanin Pdpn 54320 NM_019358 0000902 // cell morphogenesis // not recorded /// 0000902 // cell morphogenesis // inferred from sequence or structural similarity /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0001946 // lymphangiogenesis // not recorded /// 0001946 // lymphangiogenesis // inferred from sequence or structural similarity /// 0001946 // lymphangiogenesis // inferred from electronic annotation /// 0006693 // prostaglandin metabolic process // inferred from electronic annotation /// 0006693 // prostaglandin metabolic process // not recorded /// 0006833 // water transport // not recorded /// 0006833 // water transport // inferred from sequence or structural similarity /// 0006865 // amino acid transport // not recorded /// 0006865 // amino acid transport // inferred from sequence or structural similarity /// 0006928 // cellular component movement // not recorded /// 0006928 // cellular component movement // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from expression pattern /// 0007049 // cell cycle // inferred from electronic annotation /// 0007049 // cell cycle // not recorded /// 0007155 // cell adhesion // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from expression pattern /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0009790 // embryo development // inferred from expression pattern /// 0010572 // positive regulation of platelet activation // inferred from mutant phenotype /// 0015884 // folic acid transport // not recorded /// 0015884 // folic acid transport // inferred from sequence or structural similarity /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0030324 // lung development // inferred from expression pattern /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from sequence or structural similarity /// 0030324 // lung development // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0035239 // tube morphogenesis // inferred from direct assay /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048286 // lung alveolus development // not recorded /// 0051272 // positive regulation of cellular component movement // not recorded /// 0051272 // positive regulation of cellular component movement // inferred from sequence or structural similarity /// 0051272 // positive regulation of cellular component movement // inferred from electronic annotation /// 0055093 // response to hyperoxia // inferred from expression pattern 0001726 // ruffle // not recorded /// 0001726 // ruffle // inferred from sequence or structural similarity /// 0001726 // ruffle // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030027 // lamellipodium // not recorded /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030175 // filopodium // not recorded /// 0030175 // filopodium // inferred from sequence or structural similarity /// 0030175 // filopodium // inferred from electronic annotation /// 0031258 // lamellipodium membrane // inferred from electronic annotation /// 0031527 // filopodium membrane // inferred from electronic annotation /// 0031528 // microvillus membrane // inferred from electronic annotation /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005372 // water transmembrane transporter activity // not recorded /// 0005372 // water transmembrane transporter activity // inferred from sequence or structural similarity /// 0008517 // folic acid transporter activity // not recorded /// 0008517 // folic acid transporter activity // inferred from sequence or structural similarity /// 0015171 // amino acid transmembrane transporter activity // not recorded /// 0015171 // amino acid transmembrane transporter activity // inferred from sequence or structural similarity /// 0015250 // water channel activity // not recorded /// 0015250 // water channel activity // inferred from sequence or structural similarity 1386914_at NM_057188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057188.1 /DB_XREF=gi:17105339 /GEN=Gmpr /FEA=FLmRNA /CNT=29 /TID=Rn.3862.1 /TIER=FL+Stack /STK=20 /UG=Rn.3862 /LL=117533 /DEF=Rattus norvegicus guanosine monophosphate reductase (Gmpr), mRNA. /PROD=guanosine monophosphate reductase /FL=gb:AF090867.1 gb:NM_057188.1 NM_057188 guanosine monophosphate reductase Gmpr 117533 NM_057188 0008152 // metabolic process // inferred from electronic annotation /// 0009117 // nucleotide metabolic process // inferred from electronic annotation /// 0009409 // response to cold // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003920 // GMP reductase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386915_at NM_131911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_131911.1 /DB_XREF=gi:18777769 /GEN=PAL31 /FEA=FLmRNA /CNT=27 /TID=Rn.20465.1 /TIER=FL+Stack /STK=20 /UG=Rn.20465 /LL=170724 /DEF=Rattus norvegicus proliferation related acidic leucine rich protein PAL31 (PAL31), mRNA. /PROD=proliferation related acidic leucine richprotein PAL31 /FL=gb:NM_131911.1 gb:AB025581.1 NM_131911 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B Anp32b 170724 NM_131911 0000084 // S phase of mitotic cell cycle // inferred from expression pattern /// 0042127 // regulation of cell proliferation // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // inferred from electronic annotation 1386916_at NM_017321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017321.1 /DB_XREF=gi:8394161 /GEN=Ratireb /FEA=FLmRNA /CNT=23 /TID=Rn.35934.1 /TIER=FL+Stack /STK=20 /UG=Rn.35934 /LL=50655 /DEF=Rattus norvegicus iron-responsive element-binding protein (Ratireb), mRNA. /PROD=iron-responsive element-binding protein /FL=gb:NM_017321.1 gb:L23874.1 NM_017321 aconitase 1, soluble Aco1 50655 NM_017321 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006101 // citrate metabolic process // not recorded /// 0006101 // citrate metabolic process // inferred from sequence or structural similarity /// 0006417 // regulation of translation // not recorded /// 0006417 // regulation of translation // traceable author statement /// 0006879 // cellular iron ion homeostasis // inferred from direct assay /// 0006879 // cellular iron ion homeostasis // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0009791 // post-embryonic development // not recorded /// 0010040 // response to iron(II) ion // not recorded /// 0010040 // response to iron(II) ion // inferred from sequence or structural similarity /// 0010468 // regulation of gene expression // not recorded /// 0050892 // intestinal absorption // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // traceable author statement /// 0003994 // aconitate hydratase activity // inferred from direct assay /// 0003994 // aconitate hydratase activity // not recorded /// 0003994 // aconitate hydratase activity // inferred from sequence or structural similarity /// 0003994 // aconitate hydratase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016829 // lyase activity // inferred from electronic annotation /// 0030350 // iron-responsive element binding // inferred from direct assay /// 0030350 // iron-responsive element binding // not recorded /// 0030350 // iron-responsive element binding // inferred from sequence or structural similarity /// 0030350 // iron-responsive element binding // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048027 // mRNA 5'-UTR binding // inferred from direct assay /// 0051536 // iron-sulfur cluster binding // inferred from direct assay /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // not recorded /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from sequence or structural similarity 1386917_at NM_012744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012744.1 /DB_XREF=gi:6981335 /GEN=Pc /FEA=FLmRNA /CNT=29 /TID=Rn.11094.1 /TIER=FL+Stack /STK=20 /UG=Rn.11094 /LL=25104 /DEF=Rattus norvegicus Pyruvate carboxylase (Pc), mRNA. /PROD=pyruvate carboxylase /FL=gb:U32314.1 gb:U36585.1 gb:NM_012744.1 NM_012744 pyruvate carboxylase Pc 25104 NM_012744 0006090 // pyruvate metabolic process // inferred from direct assay /// 0006094 // gluconeogenesis // inferred from direct assay /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006107 // oxaloacetate metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004736 // pyruvate carboxylase activity // inferred from direct assay /// 0004736 // pyruvate carboxylase activity // inferred from mutant phenotype /// 0004736 // pyruvate carboxylase activity // not recorded /// 0004736 // pyruvate carboxylase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0009374 // biotin binding // inferred from mutant phenotype /// 0009374 // biotin binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0031406 // carboxylic acid binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1386918_a_at AF087827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF087827.1 /DB_XREF=gi:5733129 /FEA=FLmRNA /CNT=1 /TID=Rn.1129.2 /TIER=FL /STK=1 /UG=Rn.1129 /LL=29336 /UG_GENE=Oprs1 /DEF=Rattus norvegicus sigma 1 receptor mRNA, alternatively spliced, complete cds. /PROD=sigma 1 receptor /FL=gb:AF087827.1 AF087827 sigma non-opioid intracellular receptor 1 Sigmar1 29336 NM_030996 0006696 // ergosterol biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007399 // nervous system development // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005640 // nuclear outer membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005811 // lipid particle // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0000247 // C-8 sterol isomerase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // not recorded /// 0004985 // opioid receptor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 1386919_at NM_021580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021580.1 /DB_XREF=gi:11024653 /GEN=Prlph /FEA=FLmRNA /CNT=27 /TID=Rn.40173.1 /TIER=FL+Stack /STK=19 /UG=Rn.40173 /LL=59088 /DEF=Rattus norvegicus prolactin-like protein H (Prlph), mRNA. /PROD=prolactin-like protein H /FL=gb:AB009889.1 gb:NM_021580.1 NM_021580 prolactin family 8, subfamily a, member 4 Prl8a4 59088 NM_021580 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation 1386920_x_at NM_021580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021580.1 /DB_XREF=gi:11024653 /GEN=Prlph /FEA=FLmRNA /CNT=27 /TID=Rn.40173.1 /TIER=FL+Stack /STK=19 /UG=Rn.40173 /LL=59088 /DEF=Rattus norvegicus prolactin-like protein H (Prlph), mRNA. /PROD=prolactin-like protein H /FL=gb:AB009889.1 gb:NM_021580.1 NM_021580 prolactin family 8, subfamily a, member 4 Prl8a4 59088 NM_021580 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation 1386921_at NM_013128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013128.1 /DB_XREF=gi:6978700 /GEN=Cpe /FEA=FLmRNA /CNT=32 /TID=Rn.7149.1 /TIER=FL+Stack /STK=19 /UG=Rn.7149 /LL=25669 /DEF=Rattus norvegicus Carboxypeptidase E (Cpe), mRNA. /PROD=carboxypeptidase E /FL=gb:NM_013128.1 gb:M31602.1 gb:J04625.1 NM_013128 carboxypeptidase E Cpe 25669 NM_013128 0006508 // proteolysis // inferred from electronic annotation /// 0006518 // peptide metabolic process // inferred from direct assay /// 0016486 // peptide hormone processing // traceable author statement /// 0030070 // insulin processing // inferred from direct assay /// 0030070 // insulin processing // not recorded /// 0051605 // protein maturation by peptide bond cleavage // inferred from direct assay 0005615 // extracellular space // inferred from direct assay /// 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0030133 // transport vesicle // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0004180 // carboxypeptidase activity // not recorded /// 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050897 // cobalt ion binding // inferred from mutant phenotype 1386922_at AI408948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408948 /DB_XREF=gi:4252452 /DB_XREF=EST237239 /CLONE=RKIDK40 /FEA=FLmRNA /CNT=46 /TID=Rn.26083.1 /TIER=Stack /STK=11 /UG=Rn.26083 /LL=54231 /UG_GENE=Ca2 /UG_TITLE=carbonic anhydrase 2 /FL=gb:NM_019291.1 AI408948 carbonic anhydrase II Car2 54231 NM_019291 0001822 // kidney development // inferred from expression pattern /// 0002009 // morphogenesis of an epithelium // inferred from electronic annotation /// 0002009 // morphogenesis of an epithelium // not recorded /// 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0006950 // response to stress // inferred from expression pattern /// 0009268 // response to pH // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0010043 // response to zinc ion // inferred from expression pattern /// 0015670 // carbon dioxide transport // inferred from electronic annotation /// 0015670 // carbon dioxide transport // not recorded /// 0030316 // osteoclast differentiation // traceable author statement /// 0030641 // regulation of cellular pH // traceable author statement /// 0032849 // positive regulation of cellular pH reduction // inferred from mutant phenotype /// 0042475 // odontogenesis of dentine-containing tooth // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045124 // regulation of bone resorption // traceable author statement /// 0045672 // positive regulation of osteoclast differentiation // inferred from mutant phenotype /// 0045780 // positive regulation of bone resorption // inferred from mutant phenotype /// 0046903 // secretion // inferred from electronic annotation /// 0046903 // secretion // not recorded /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005902 // microvillus // inferred from direct assay /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0045177 // apical part of cell // inferred from direct assay /// 0045177 // apical part of cell // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation 0004089 // carbonate dehydratase activity // inferred from direct assay /// 0004089 // carbonate dehydratase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0016829 // lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386923_at M62388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M62388.1 /DB_XREF=gi:207554 /GEN=ubiquitin conjugating-protein /FEA=FLmRNA /CNT=31 /TID=Rn.3530.1 /TIER=FL+Stack /STK=17 /UG=Rn.3530 /LL=81816 /DEF=Rattus norvegicus ubiquitin conjugating enzyme mRNA, complete cds. /PROD=ubiquitin conjugating-protein /FL=gb:AF144083.1 gb:NM_031138.1 gb:M62388.1 M62388 ubiquitin-conjugating enzyme E2B (RAD6 homolog, S. cerevisiae) Ube2b 81816 NM_031138 0000209 // protein polyubiquitination // inferred from electronic annotation /// 0000209 // protein polyubiquitination // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006281 // DNA repair // not recorded /// 0006301 // postreplication repair // not recorded /// 0006344 // maintenance of chromatin silencing // inferred from electronic annotation /// 0006344 // maintenance of chromatin silencing // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from expression pattern /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0006513 // protein monoubiquitination // inferred from electronic annotation /// 0006513 // protein monoubiquitination // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007288 // sperm axoneme assembly // inferred from electronic annotation /// 0007288 // sperm axoneme assembly // not recorded /// 0009411 // response to UV // inferred from electronic annotation /// 0009411 // response to UV // not recorded /// 0010845 // positive regulation of reciprocal meiotic recombination // inferred from electronic annotation /// 0010845 // positive regulation of reciprocal meiotic recombination // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0031056 // regulation of histone modification // inferred from electronic annotation /// 0031056 // regulation of histone modification // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0033128 // negative regulation of histone phosphorylation // inferred from electronic annotation /// 0033128 // negative regulation of histone phosphorylation // not recorded /// 0033522 // histone H2A ubiquitination // inferred from electronic annotation /// 0033522 // histone H2A ubiquitination // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0043951 // negative regulation of cAMP-mediated signaling // not recorded /// 0050821 // protein stabilization // inferred from electronic annotation /// 0050821 // protein stabilization // not recorded /// 0051026 // chiasma assembly // inferred from electronic annotation /// 0051026 // chiasma assembly // not recorded /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051865 // protein autoubiquitination // inferred from electronic annotation /// 0051865 // protein autoubiquitination // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0070076 // histone lysine demethylation // inferred from electronic annotation /// 0070076 // histone lysine demethylation // not recorded /// 0070193 // synaptonemal complex organization // inferred from electronic annotation /// 0070193 // synaptonemal complex organization // not recorded /// 0070534 // protein K63-linked ubiquitination // not recorded /// 0070534 // protein K63-linked ubiquitination // inferred from sequence or structural similarity /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0070936 // protein K48-linked ubiquitination // inferred from sequence or structural similarity /// 0070979 // protein K11-linked ubiquitination // not recorded /// 0070979 // protein K11-linked ubiquitination // inferred from sequence or structural similarity 0000785 // chromatin // not recorded /// 0000785 // chromatin // inferred from electronic annotation /// 0000790 // nuclear chromatin // inferred from electronic annotation /// 0000790 // nuclear chromatin // not recorded /// 0001741 // XY body // inferred from electronic annotation /// 0001741 // XY body // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005657 // replication fork // inferred from electronic annotation /// 0005657 // replication fork // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded 1386924_at NM_031138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031138.1 /DB_XREF=gi:13592122 /GEN=LOC81816 /FEA=FLmRNA /CNT=31 /TID=Rn.3530.1 /TIER=FL /STK=2 /UG=Rn.3530 /LL=81816 /DEF=Rattus norvegicus ubiquitin conjugating enzyme (LOC81816), mRNA. /PROD=ubiquitin conjugating enzyme /FL=gb:AF144083.1 gb:NM_031138.1 gb:M62388.1 NM_031138 ubiquitin-conjugating enzyme E2B (RAD6 homolog, S. cerevisiae) Ube2b 81816 NM_031138 0000209 // protein polyubiquitination // inferred from electronic annotation /// 0000209 // protein polyubiquitination // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006281 // DNA repair // not recorded /// 0006301 // postreplication repair // not recorded /// 0006344 // maintenance of chromatin silencing // inferred from electronic annotation /// 0006344 // maintenance of chromatin silencing // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from expression pattern /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0006513 // protein monoubiquitination // inferred from electronic annotation /// 0006513 // protein monoubiquitination // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007288 // sperm axoneme assembly // inferred from electronic annotation /// 0007288 // sperm axoneme assembly // not recorded /// 0009411 // response to UV // inferred from electronic annotation /// 0009411 // response to UV // not recorded /// 0010845 // positive regulation of reciprocal meiotic recombination // inferred from electronic annotation /// 0010845 // positive regulation of reciprocal meiotic recombination // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0031056 // regulation of histone modification // inferred from electronic annotation /// 0031056 // regulation of histone modification // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0033128 // negative regulation of histone phosphorylation // inferred from electronic annotation /// 0033128 // negative regulation of histone phosphorylation // not recorded /// 0033522 // histone H2A ubiquitination // inferred from electronic annotation /// 0033522 // histone H2A ubiquitination // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0043951 // negative regulation of cAMP-mediated signaling // not recorded /// 0050821 // protein stabilization // inferred from electronic annotation /// 0050821 // protein stabilization // not recorded /// 0051026 // chiasma assembly // inferred from electronic annotation /// 0051026 // chiasma assembly // not recorded /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051865 // protein autoubiquitination // inferred from electronic annotation /// 0051865 // protein autoubiquitination // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0070076 // histone lysine demethylation // inferred from electronic annotation /// 0070076 // histone lysine demethylation // not recorded /// 0070193 // synaptonemal complex organization // inferred from electronic annotation /// 0070193 // synaptonemal complex organization // not recorded /// 0070534 // protein K63-linked ubiquitination // not recorded /// 0070534 // protein K63-linked ubiquitination // inferred from sequence or structural similarity /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0070936 // protein K48-linked ubiquitination // inferred from sequence or structural similarity /// 0070979 // protein K11-linked ubiquitination // not recorded /// 0070979 // protein K11-linked ubiquitination // inferred from sequence or structural similarity 0000785 // chromatin // not recorded /// 0000785 // chromatin // inferred from electronic annotation /// 0000790 // nuclear chromatin // inferred from electronic annotation /// 0000790 // nuclear chromatin // not recorded /// 0001741 // XY body // inferred from electronic annotation /// 0001741 // XY body // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005657 // replication fork // inferred from electronic annotation /// 0005657 // replication fork // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded 1386925_at NM_019289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019289.1 /DB_XREF=gi:9506404 /GEN=Arpc1b /FEA=FLmRNA /CNT=26 /TID=Rn.2090.1 /TIER=FL+Stack /STK=17 /UG=Rn.2090 /LL=54227 /DEF=Rattus norvegicus Actin-related protein complex 1b (Arpc1b), mRNA. /PROD=Actin-related protein complex 1b /FL=gb:AF083269.1 gb:NM_019289.1 NM_019289 actin related protein 2/3 complex, subunit 1B Arpc1b 54227 NM_019289 0030833 // regulation of actin filament polymerization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1386926_at NM_053607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053607.1 /DB_XREF=gi:16758397 /GEN=Facl5 /FEA=FLmRNA /CNT=27 /TID=Rn.3061.1 /TIER=FL+Stack /STK=17 /UG=Rn.3061 /LL=94340 /DEF=Rattus norvegicus long-chain fatty acid coenzyme A ligase 5 (Facl5), mRNA. /PROD=long-chain fatty acid coenzyme A ligase 5 /FL=gb:NM_053607.1 gb:AB012933.1 NM_053607 acyl-CoA synthetase long-chain family member 5 Acsl5 94340 NM_053607 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // traceable author statement /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from genetic interaction /// 0009744 // response to sucrose stimulus // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010747 // positive regulation of plasma membrane long-chain fatty acid transport // inferred from direct assay /// 0010867 // positive regulation of triglyceride biosynthetic process // inferred from direct assay /// 0015908 // fatty acid transport // inferred from genetic interaction /// 0032000 // positive regulation of fatty acid beta-oxidation // inferred from genetic interaction /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0070723 // response to cholesterol // inferred from expression pattern 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from direct assay /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1386927_at NM_012930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012930.1 /DB_XREF=gi:6978704 /GEN=Cpt2 /FEA=FLmRNA /CNT=23 /TID=Rn.11389.1 /TIER=FL+Stack /STK=17 /UG=Rn.11389 /LL=25413 /DEF=Rattus norvegicus Carnitine palmitoyltransferase 2 (Cpt2), mRNA. /PROD=carnitine palmitoyltransferase 2 /FL=gb:J05470.1 gb:U88295.1 gb:NM_012930.1 NM_012930 carnitine palmitoyltransferase 2 Cpt2 25413 NM_012930 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006853 // carnitine shuttle // not recorded /// 0015909 // long-chain fatty acid transport // traceable author statement /// 0046320 // regulation of fatty acid oxidation // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004095 // carnitine O-palmitoyltransferase activity // inferred from direct assay /// 0004095 // carnitine O-palmitoyltransferase activity // inferred from mutant phenotype /// 0004095 // carnitine O-palmitoyltransferase activity // not recorded /// 0004095 // carnitine O-palmitoyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1386928_at NM_022400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022400.1 /DB_XREF=gi:11693173 /GEN=Bcat2 /FEA=FLmRNA /CNT=22 /TID=Rn.981.1 /TIER=FL+Stack /STK=17 /UG=Rn.981 /LL=64203 /DEF=Rattus norvegicus branched chain aminotransferase 2, mitochondrial (Bcat2), mRNA. /PROD=branched chain aminotransferase 2,mitochondrial /FL=gb:NM_022400.1 gb:U68417.1 NM_022400 branched chain aminotransferase 2, mitochondrial Bcat2 64203 NM_022400 0006549 // isoleucine metabolic process // not recorded /// 0006550 // isoleucine catabolic process // inferred from direct assay /// 0006550 // isoleucine catabolic process // not recorded /// 0006551 // leucine metabolic process // not recorded /// 0006573 // valine metabolic process // not recorded /// 0007595 // lactation // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009081 // branched chain family amino acid metabolic process // not recorded /// 0009081 // branched chain family amino acid metabolic process // traceable author statement /// 0009081 // branched chain family amino acid metabolic process // inferred from electronic annotation /// 0009082 // branched chain family amino acid biosynthetic process // inferred from electronic annotation /// 0009083 // branched chain family amino acid catabolic process // inferred from direct assay /// 0009083 // branched chain family amino acid catabolic process // not recorded /// 0009083 // branched chain family amino acid catabolic process // inferred from electronic annotation /// 0009098 // leucine biosynthetic process // inferred from direct assay /// 0010817 // regulation of hormone levels // not recorded 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004084 // branched-chain-amino-acid transaminase activity // inferred from direct assay /// 0004084 // branched-chain-amino-acid transaminase activity // not recorded /// 0004084 // branched-chain-amino-acid transaminase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1386929_at NM_012734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012734.1 /DB_XREF=gi:6981021 /GEN=Hk1 /FEA=FLmRNA /CNT=25 /TID=Rn.11017.1 /TIER=FL+Stack /STK=17 /UG=Rn.11017 /LL=25058 /DEF=Rattus norvegicus Hexokinase 1 (Hk1), mRNA. /PROD=hexokinase 1 /FL=gb:J04526.1 gb:NM_012734.1 NM_012734 hexokinase 1 Hk1 25058 NM_012734 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006096 // glycolysis // inferred from direct assay /// 0006096 // glycolysis // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0010359 // regulation of anion channel activity // inferred from direct assay /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0018107 // peptidyl-threonine phosphorylation // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046835 // carbohydrate phosphorylation // inferred from direct assay /// 0046835 // carbohydrate phosphorylation // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004340 // glucokinase activity // inferred from direct assay /// 0004396 // hexokinase activity // inferred from direct assay /// 0004396 // hexokinase activity // not recorded /// 0004396 // hexokinase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred by curator /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005536 // glucose binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0016887 // ATPase activity // inferred by curator /// 0042803 // protein homodimerization activity // inferred from direct assay 1386930_at NM_031331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031331.1 /DB_XREF=gi:13786157 /GEN=Psmd4 /FEA=FLmRNA /CNT=21 /TID=Rn.3830.1 /TIER=FL+Stack /STK=17 /UG=Rn.3830 /LL=83499 /DEF=Rattus norvegicus proteasome (prosome, macropain) 26S subunit, non-ATPase,4 (Psmd4), mRNA. /PROD=proteasome (prosome, macropain) 26S subunit,non-ATPase,4 /FL=gb:AF175575.1 gb:AB017188.1 gb:NM_031331.1 NM_031331 proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 Psmd4 83499 NM_031331 0006281 // DNA repair // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0042044 // fluid transport // non-traceable author statement /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1386931_at NM_017144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017144.1 /DB_XREF=gi:8394468 /GEN=Tnni3 /FEA=FLmRNA /CNT=19 /TID=Rn.64141.1 /TIER=FL+Stack /STK=17 /UG=Rn.64141 /LL=29248 /DEF=Rattus norvegicus Troponin I (Tnni3), mRNA. /PROD=troponin I, cardiac /FL=gb:M57679.1 gb:M92074.1 gb:NM_017144.1 NM_017144 troponin I type 3 (cardiac) Tnni3 29248 NM_017144 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001980 // regulation of systemic arterial blood pressure by ischemic conditions // inferred from electronic annotation /// 0001980 // regulation of systemic arterial blood pressure by ischemic conditions // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006937 // regulation of muscle contraction // not recorded /// 0006937 // regulation of muscle contraction // traceable author statement /// 0006937 // regulation of muscle contraction // inferred from electronic annotation /// 0006940 // regulation of smooth muscle contraction // inferred from mutant phenotype /// 0006941 // striated muscle contraction // not recorded /// 0006941 // striated muscle contraction // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0032780 // negative regulation of ATPase activity // inferred from electronic annotation /// 0032780 // negative regulation of ATPase activity // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0060047 // heart contraction // not recorded /// 0060047 // heart contraction // inferred from electronic annotation /// 0060048 // cardiac muscle contraction // inferred from direct assay /// 0060048 // cardiac muscle contraction // inferred from mutant phenotype /// 0060048 // cardiac muscle contraction // not recorded /// 0060048 // cardiac muscle contraction // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005861 // troponin complex // not recorded /// 0005861 // troponin complex // traceable author statement /// 0005861 // troponin complex // inferred from electronic annotation /// 0030016 // myofibril // inferred from direct assay /// 0030017 // sarcomere // inferred from direct assay /// 0030017 // sarcomere // not recorded /// 0030017 // sarcomere // inferred from electronic annotation /// 0043292 // contractile fiber // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019855 // calcium channel inhibitor activity // inferred from electronic annotation /// 0019855 // calcium channel inhibitor activity // not recorded /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0030172 // troponin C binding // inferred from electronic annotation /// 0030172 // troponin C binding // not recorded /// 0031014 // troponin T binding // inferred from electronic annotation /// 0031014 // troponin T binding // not recorded /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded 1386932_at AI577681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577681 /DB_XREF=gi:4562057 /DB_XREF=UI-R-G0-uk-b-10-0-UI.s2 /CLONE=UI-R-G0-uk-b-10-0-UI /FEA=FLmRNA /CNT=36 /TID=Rn.5762.1 /TIER=Stack /STK=6 /UG=Rn.5762 /LL=24398 /UG_GENE=Gls /UG_TITLE=Glutaminase /FL=gb:NM_012569.1 gb:M22586.1 gb:M65150.1 AI577681 glutaminase Gls 24398 NM_001109968 /// NM_012569 0002087 // regulation of respiratory gaseous exchange by neurological system process // not recorded /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0006543 // glutamine catabolic process // not recorded /// 0006543 // glutamine catabolic process // traceable author statement /// 0007268 // synaptic transmission // not recorded /// 0007610 // behavior // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation 0004359 // glutaminase activity // not recorded /// 0004359 // glutaminase activity // traceable author statement /// 0004359 // glutaminase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1386933_at NM_134418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134418.1 /DB_XREF=gi:19705556 /GEN=Gp2 /FEA=FLmRNA /CNT=20 /TID=Rn.11223.1 /TIER=FL+Stack /STK=17 /UG=Rn.11223 /LL=171459 /DEF=Rattus norvegicus secretory (zymogen) granule membrane glycoprotein GP2 (Gp2), mRNA. /PROD=secretory (zymogen) granule membraneglycoprotein GP2 /FL=gb:NM_134418.1 gb:M58716.1 NM_134418 glycoprotein 2 (zymogen granule membrane) Gp2 171459 NM_134418 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 1386934_at NM_017348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017348.1 /DB_XREF=gi:8393112 /GEN=CHOT1 /FEA=FLmRNA /CNT=29 /TID=Rn.10336.1 /TIER=FL+Stack /STK=17 /UG=Rn.10336 /LL=50690 /DEF=Rattus norvegicus choline transporter (CHOT1), mRNA. /PROD=choline transporter /FL=gb:NM_017348.1 NM_017348 solute carrier family 6 (neurotransmitter transporter, creatine), member 8 Slc6a8 50690 NM_017348 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0015881 // creatine transport // inferred from direct assay 0005886 // plasma membrane // traceable author statement /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005308 // creatine transporter activity // inferred from direct assay /// 0005309 // creatine:sodium symporter activity // inferred from direct assay /// 0005309 // creatine:sodium symporter activity // inferred from electronic annotation /// 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0015220 // choline transmembrane transporter activity // inferred from direct assay /// 0015220 // choline transmembrane transporter activity // non-traceable author statement /// 0015293 // symporter activity // inferred from electronic annotation 1386935_at NM_024388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024388.1 /DB_XREF=gi:13242296 /GEN=Nr4a1 /FEA=FLmRNA /CNT=19 /TID=Rn.10000.1 /TIER=FL+Stack /STK=17 /UG=Rn.10000 /LL=79240 /DEF=Rattus norvegicus immediate early gene transcription factor NGFI-B (Nr4a1), mRNA. /PROD=immediate early gene transcription factorNGFI-B /FL=gb:NM_024388.1 gb:U17254.1 NM_024388 nuclear receptor subfamily 4, group A, member 1 Nr4a1 79240 NM_024388 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0043154 // negative regulation of caspase activity // inferred from electronic annotation /// 0043154 // negative regulation of caspase activity // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0030528 // transcription regulator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1386936_at NM_057187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057187.1 /DB_XREF=gi:17105337 /GEN=Grifin /FEA=FLmRNA /CNT=17 /TID=Rn.26894.1 /TIER=FL+Stack /STK=17 /UG=Rn.26894 /LL=117130 /DEF=Rattus norvegicus galectin-related inter-fiber protein (Grifin), mRNA. /PROD=galectin-related inter-fiber protein /FL=gb:AF082160.1 gb:NM_057187.1 NM_057187 galectin-related inter-fiber protein Grifin 117130 NM_057187 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from electronic annotation 1386937_at AI232036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232036 /DB_XREF=gi:3815916 /DB_XREF=EST228724 /CLONE=RKIBW05 /FEA=FLmRNA /CNT=77 /TID=Rn.8925.1 /TIER=Stack /STK=7 /UG=Rn.8925 /LL=25650 /UG_GENE=Atp1b1 /UG_TITLE=ATPase Na+K+ transporting beta 1 polypeptide /FL=gb:M14137.1 gb:NM_013113.1 gb:J02701.1 AI232036 ATPase, Na+/K+ transporting, beta 1 polypeptide Atp1b1 25650 NM_013113 0001666 // response to hypoxia // inferred from direct assay /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from direct assay /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0030001 // metal ion transport // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005890 // sodium:potassium-exchanging ATPase complex // inferred from direct assay /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay 0005391 // sodium:potassium-exchanging ATPase activity // inferred by curator /// 0005391 // sodium:potassium-exchanging ATPase activity // inferred from direct assay /// 0005391 // sodium:potassium-exchanging ATPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1386938_at NM_031012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031012.1 /DB_XREF=gi:13591913 /GEN=Anpep /FEA=FLmRNA /CNT=31 /TID=Rn.11132.1 /TIER=FL+Stack /STK=16 /UG=Rn.11132 /LL=81641 /DEF=Rattus norvegicus alanyl (membrane) aminopeptidase (Anpep), mRNA. /PROD=kidney aminopeptidase M /FL=gb:M26710.1 gb:M25073.1 gb:NM_031012.1 NM_031012 alanyl (membrane) aminopeptidase Anpep 81641 NM_031012 0001525 // angiogenesis // inferred from electronic annotation /// 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006725 // cellular aromatic compound metabolic process // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005793 // ER-Golgi intermediate compartment // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0012506 // vesicle membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031983 // vesicle lumen // inferred from direct assay 0004177 // aminopeptidase activity // inferred from direct assay /// 0004177 // aminopeptidase activity // not recorded /// 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1386939_a_at AF051527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF051527.1 /DB_XREF=gi:2961611 /GEN=BCCA1 /FEA=mRNA /CNT=1 /TID=Rn.11281.3 /TIER=ConsEnd /STK=0 /UG=Rn.11281 /LL=25398 /DEF=Rattus norvegicus class A calcium channel variant riA-II (BCCA1) mRNA, partial cds. /PROD=class A calcium channel variant riA-II AF051527 calcium channel, voltage-dependent, P/Q type, alpha 1A subunit Cacna1a 25398 NM_012918 0000096 // sulfur amino acid metabolic process // inferred from electronic annotation /// 0000096 // sulfur amino acid metabolic process // not recorded /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from mutant phenotype /// 0006816 // calcium ion transport // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from sequence or structural similarity /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // not recorded /// 0007268 // synaptic transmission // inferred from mutant phenotype /// 0007268 // synaptic transmission // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007270 // nerve-nerve synaptic transmission // not recorded /// 0007270 // nerve-nerve synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0007416 // synapse assembly // inferred from electronic annotation /// 0007416 // synapse assembly // not recorded /// 0007628 // adult walking behavior // inferred from electronic annotation /// 0007628 // adult walking behavior // not recorded /// 0008219 // cell death // inferred from electronic annotation /// 0008219 // cell death // not recorded /// 0014051 // gamma-aminobutyric acid secretion // inferred from electronic annotation /// 0014051 // gamma-aminobutyric acid secretion // not recorded /// 0014056 // regulation of acetylcholine secretion // inferred from electronic annotation /// 0014056 // regulation of acetylcholine secretion // not recorded /// 0016049 // cell growth // inferred from electronic annotation /// 0016049 // cell growth // not recorded /// 0017156 // calcium ion-dependent exocytosis // not recorded /// 0017156 // calcium ion-dependent exocytosis // inferred from electronic annotation /// 0017158 // regulation of calcium ion-dependent exocytosis // inferred from electronic annotation /// 0017158 // regulation of calcium ion-dependent exocytosis // not recorded /// 0019226 // transmission of nerve impulse // not recorded /// 0019226 // transmission of nerve impulse // inferred from electronic annotation /// 0021522 // spinal cord motor neuron differentiation // inferred from electronic annotation /// 0021522 // spinal cord motor neuron differentiation // not recorded /// 0021590 // cerebellum maturation // inferred from electronic annotation /// 0021590 // cerebellum maturation // not recorded /// 0021679 // cerebellar molecular layer development // inferred from electronic annotation /// 0021679 // cerebellar molecular layer development // not recorded /// 0021680 // cerebellar Purkinje cell layer development // inferred from electronic annotation /// 0021680 // cerebellar Purkinje cell layer development // not recorded /// 0021702 // cerebellar Purkinje cell differentiation // inferred from electronic annotation /// 0021702 // cerebellar Purkinje cell differentiation // not recorded /// 0021750 // vestibular nucleus development // inferred from electronic annotation /// 0021750 // vestibular nucleus development // not recorded /// 0021953 // central nervous system neuron differentiation // not recorded /// 0021953 // central nervous system neuron differentiation // inferred from electronic annotation /// 0030644 // cellular chloride ion homeostasis // inferred from electronic annotation /// 0030644 // cellular chloride ion homeostasis // not recorded /// 0032353 // negative regulation of hormone biosynthetic process // inferred from electronic annotation /// 0032353 // negative regulation of hormone biosynthetic process // not recorded /// 0035249 // synaptic transmission, glutamatergic // inferred from electronic annotation /// 0035249 // synaptic transmission, glutamatergic // not recorded /// 0042133 // neurotransmitter metabolic process // inferred from electronic annotation /// 0042133 // neurotransmitter metabolic process // not recorded /// 0042391 // regulation of membrane potential // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042403 // thyroid hormone metabolic process // not recorded /// 0042445 // hormone metabolic process // inferred from electronic annotation /// 0042445 // hormone metabolic process // not recorded /// 0043113 // receptor clustering // inferred from electronic annotation /// 0043113 // receptor clustering // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0048265 // response to pain // not recorded /// 0048265 // response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // not recorded /// 0048791 // calcium ion-dependent exocytosis of neurotransmitter // inferred from electronic annotation /// 0048791 // calcium ion-dependent exocytosis of neurotransmitter // not recorded /// 0048813 // dendrite morphogenesis // inferred from electronic annotation /// 0048813 // dendrite morphogenesis // not recorded /// 0050770 // regulation of axonogenesis // inferred from electronic annotation /// 0050770 // regulation of axonogenesis // not recorded /// 0050877 // neurological system process // not recorded /// 0050877 // neurological system process // inferred from electronic annotation /// 0050883 // musculoskeletal movement, spinal reflex action // inferred from electronic annotation /// 0050883 // musculoskeletal movement, spinal reflex action // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0050905 // neuromuscular process // not recorded /// 0050905 // neuromuscular process // inferred from electronic annotation /// 0051899 // membrane depolarization // inferred from electronic annotation /// 0051899 // membrane depolarization // not recorded /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0051932 // synaptic transmission, GABAergic // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060024 // rhythmic synaptic transmission // inferred from electronic annotation /// 0060024 // rhythmic synaptic transmission // not recorded /// 0070588 // calcium ion transmembrane transport // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // inferred from direct assay /// 0005891 // voltage-gated calcium channel complex // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // not recorded /// 0005891 // voltage-gated calcium channel complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0042995 // cell projection // not recorded /// 0043025 // neuronal cell body // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043204 // perikaryon // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from direct assay /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // not recorded /// 0005245 // voltage-gated calcium channel activity // inferred from sequence or structural similarity /// 0005245 // voltage-gated calcium channel activity // traceable author statement /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from direct assay /// 0008331 // high voltage-gated calcium channel activity // inferred from electronic annotation /// 0008331 // high voltage-gated calcium channel activity // not recorded /// 0019905 // syntaxin binding // inferred from electronic annotation /// 0019905 // syntaxin binding // not recorded 1386940_at NM_021989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021989.1 /DB_XREF=gi:11464978 /GEN=Timp2 /FEA=FLmRNA /CNT=27 /TID=Rn.10161.1 /TIER=FL+Stack /STK=16 /UG=Rn.10161 /LL=29543 /DEF=Rattus norvegicus tissue inhibitor of metalloproteinase 2 (Timp2), mRNA. /PROD=tissue inhibitor of metalloproteinase 2 /FL=gb:L31884.1 gb:U14526.1 gb:NM_021989.1 NM_021989 TIMP metallopeptidase inhibitor 2 Timp2 29543 NM_021989 0007283 // spermatogenesis // non-traceable author statement /// 0007417 // central nervous system development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010951 // negative regulation of endopeptidase activity // not recorded /// 0030814 // regulation of cAMP metabolic process // not recorded /// 0032487 // regulation of Rap protein signal transduction // inferred from direct assay /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043408 // regulation of MAPKKK cascade // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from direct assay /// 0045664 // regulation of neuron differentiation // not recorded /// 0045666 // positive regulation of neuron differentiation // inferred from direct assay /// 0045762 // positive regulation of adenylate cyclase activity // inferred from mutant phenotype /// 0045861 // negative regulation of proteolysis // inferred from mutant phenotype /// 0045930 // negative regulation of mitotic cell cycle // inferred from direct assay /// 0046580 // negative regulation of Ras protein signal transduction // inferred from direct assay /// 0050790 // regulation of catalytic activity // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0030426 // growth cone // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from physical interaction /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008047 // enzyme activator activity // not recorded /// 0008191 // metalloendopeptidase inhibitor activity // inferred from electronic annotation /// 0008191 // metalloendopeptidase inhibitor activity // inferred from mutant phenotype /// 0008191 // metalloendopeptidase inhibitor activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1386941_at NM_022401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022401.1 /DB_XREF=gi:13540713 /GEN=Plec1 /FEA=FLmRNA /CNT=21 /TID=Rn.1085.1 /TIER=FL+Stack /STK=16 /UG=Rn.1085 /LL=64204 /DEF=Rattus norvegicus plectin (Plec1), mRNA. /PROD=plectin /FL=gb:NM_022401.1 NM_022401 plectin Plec 64204 NM_001164296 /// NM_001164297 /// NM_001164298 /// NM_001164299 /// NM_001164302 /// NM_001164303 /// NM_001164304 /// NM_001164305 /// NM_001164307 /// NM_001164308 /// NM_022401 0007565 // female pregnancy // inferred from expression pattern /// 0007584 // response to nutrient // inferred from direct assay /// 0030855 // epithelial cell differentiation // inferred from expression pattern /// 0031581 // hemidesmosome assembly // not recorded 0005626 // insoluble fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0009925 // basal plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0042383 // sarcolemma // inferred from direct assay /// 0043292 // contractile fiber // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from mutant phenotype /// 0008092 // cytoskeletal protein binding // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from direct assay 1386942_at NM_022596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022596.1 /DB_XREF=gi:12018259 /GEN=Gm130 /FEA=FLmRNA /CNT=21 /TID=Rn.6165.1 /TIER=FL+Stack /STK=16 /UG=Rn.6165 /LL=64528 /DEF=Rattus norvegicus cis-Golgi matrix protein GM130 (Gm130), mRNA. /PROD=cis-Golgi matrix protein GM130 /FL=gb:U35022.2 gb:NM_022596.1 NM_022596 golgi autoantigen, golgin subfamily a, 2 Golga2 64528 NM_022596 0000137 // Golgi cis cisterna // inferred from direct assay /// 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005801 // cis-Golgi network // inferred from direct assay /// 0005801 // cis-Golgi network // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0032403 // protein complex binding // inferred from direct assay 1386943_at NM_022533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022533.1 /DB_XREF=gi:11968121 /GEN=Z49858 /FEA=FLmRNA /CNT=19 /TID=Rn.1721.1 /TIER=FL+Stack /STK=16 /UG=Rn.1721 /LL=64364 /DEF=Rattus norvegicus plasmolipin (Z49858), mRNA. /PROD=plasmolipin /FL=gb:U13617.1 gb:NM_022533.1 NM_022533 plasma membrane proteolipid (plasmolipin) Pllp 64364 NM_022533 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from direct assay /// 0006811 // ion transport // inferred from electronic annotation /// 0009611 // response to wounding // inferred from expression pattern /// 0042552 // myelination // inferred from expression pattern 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043218 // compact myelin // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation 1386944_a_at NM_013098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013098.1 /DB_XREF=gi:6978864 /GEN=G6pc /FEA=FLmRNA /CNT=22 /TID=Rn.10992.1 /TIER=FL+Stack /STK=16 /UG=Rn.10992 /LL=25634 /DEF=Rattus norvegicus Glucose-6-phosphatase (G6pc), mRNA. /PROD=glucose-6-phosphatase /FL=gb:L37333.1 gb:D78592.1 gb:NM_013098.1 NM_013098 glucose-6-phosphatase, catalytic subunit G6pc 25634 NM_013098 0005977 // glycogen metabolic process // not recorded /// 0005980 // glycogen catabolic process // not recorded /// 0006094 // gluconeogenesis // inferred from direct assay /// 0006094 // gluconeogenesis // not recorded /// 0006094 // gluconeogenesis // traceable author statement /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // not recorded /// 0006796 // phosphate metabolic process // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0008202 // steroid metabolic process // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0015760 // glucose-6-phosphate transport // not recorded /// 0016311 // dephosphorylation // not recorded /// 0032094 // response to food // inferred from expression pattern /// 0035264 // multicellular organism growth // not recorded /// 0042593 // glucose homeostasis // inferred from mutant phenotype /// 0042593 // glucose homeostasis // not recorded /// 0042632 // cholesterol homeostasis // not recorded /// 0046415 // urate metabolic process // not recorded /// 0046838 // phosphorylated carbohydrate dephosphorylation // inferred from direct assay /// 0051156 // glucose 6-phosphate metabolic process // inferred from direct assay /// 0051156 // glucose 6-phosphate metabolic process // not recorded /// 0055088 // lipid homeostasis // inferred from mutant phenotype 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004346 // glucose-6-phosphatase activity // inferred from direct assay /// 0004346 // glucose-6-phosphatase activity // not recorded /// 0004346 // glucose-6-phosphatase activity // traceable author statement /// 0004346 // glucose-6-phosphatase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042301 // phosphate binding // not recorded 1386945_a_at NM_031976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031976.1 /DB_XREF=gi:14010876 /GEN=Prkab1 /FEA=FLmRNA /CNT=19 /TID=Rn.3619.1 /TIER=FL+Stack /STK=16 /UG=Rn.3619 /LL=83803 /DEF=Rattus norvegicus 5-AMP-activated protein kinase, beta subunit (Prkab1), mRNA. /PROD=5-AMP-activated protein kinase, beta subunit /FL=gb:NM_031976.1 gb:U42411.1 NM_031976 protein kinase, AMP-activated, beta 1 non-catalytic subunit Prkab1 83803 NM_031976 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006950 // response to stress // traceable author statement /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0046320 // regulation of fatty acid oxidation // not recorded /// 0050790 // regulation of catalytic activity // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded /// 0031588 // AMP-activated protein kinase complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0004679 // AMP-activated protein kinase activity // inferred from direct assay /// 0004679 // AMP-activated protein kinase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction 1386946_at NM_031559 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031559.1 /DB_XREF=gi:13928755 /GEN=Cpt1a /FEA=FLmRNA /CNT=26 /TID=Rn.2856.1 /TIER=FL+Stack /STK=16 /UG=Rn.2856 /LL=25757 /DEF=Rattus norvegicus Carnitine palmitoyltransferase 1 alpha, liver isoform (Cpt1a), mRNA. /PROD=carnitine palmitoyltransferase 1 alpha, liverisoform /FL=gb:U88294.1 gb:L07736.1 gb:NM_031559.1 NM_031559 carnitine palmitoyltransferase 1a, liver Cpt1a 25757 NM_031559 0001676 // long-chain fatty acid metabolic process // inferred from mutant phenotype /// 0001676 // long-chain fatty acid metabolic process // traceable author statement /// 0006006 // glucose metabolic process // inferred from mutant phenotype /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0009437 // carnitine metabolic process // traceable author statement /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0031998 // regulation of fatty acid beta-oxidation // traceable author statement /// 0032000 // positive regulation of fatty acid beta-oxidation // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0042755 // eating behavior // inferred from mutant phenotype /// 0046320 // regulation of fatty acid oxidation // inferred from mutant phenotype /// 0050796 // regulation of insulin secretion // inferred from mutant phenotype /// 0051260 // protein homooligomerization // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0004095 // carnitine O-palmitoyltransferase activity // inferred from direct assay /// 0004095 // carnitine O-palmitoyltransferase activity // inferred from mutant phenotype /// 0004095 // carnitine O-palmitoyltransferase activity // traceable author statement /// 0004095 // carnitine O-palmitoyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay 1386947_at NM_031334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031334.1 /DB_XREF=gi:13786163 /GEN=Cdh1 /FEA=FLmRNA /CNT=22 /TID=Rn.1303.1 /TIER=FL+Stack /STK=16 /UG=Rn.1303 /LL=83502 /DEF=Rattus norvegicus E-cadherin (Cdh1), mRNA. /PROD=E-cadherin /FL=gb:NM_031334.1 gb:AB017696.1 NM_031334 cadherin 1 Cdh1 83502 NM_031334 0001829 // trophectodermal cell differentiation // inferred from electronic annotation /// 0001829 // trophectodermal cell differentiation // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007416 // synapse assembly // inferred from mutant phenotype /// 0009636 // response to toxin // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0016337 // cell-cell adhesion // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0019538 // protein metabolic process // inferred from electronic annotation /// 0019538 // protein metabolic process // not recorded /// 0021983 // pituitary gland development // inferred from expression pattern /// 0031175 // neuron projection development // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042993 // positive regulation of transcription factor import into nucleus // inferred from electronic annotation /// 0042993 // positive regulation of transcription factor import into nucleus // not recorded /// 0043281 // regulation of caspase activity // inferred from electronic annotation /// 0043281 // regulation of caspase activity // not recorded /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded /// 0060662 // salivary gland cavitation // inferred from electronic annotation /// 0060662 // salivary gland cavitation // not recorded /// 0060693 // regulation of branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060693 // regulation of branching involved in salivary gland morphogenesis // not recorded /// 0071285 // cellular response to lithium ion // inferred from electronic annotation /// 0071285 // cellular response to lithium ion // not recorded /// 0071681 // cellular response to indole-3-methanol // inferred from electronic annotation /// 0071681 // cellular response to indole-3-methanol // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016328 // lateral plasma membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // not recorded /// 0016342 // catenin complex // inferred from electronic annotation /// 0016342 // catenin complex // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0043296 // apical junction complex // inferred from electronic annotation /// 0043296 // apical junction complex // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0042153 // RPTP-like protein binding // inferred from electronic annotation /// 0042153 // RPTP-like protein binding // not recorded /// 0045295 // gamma-catenin binding // inferred from electronic annotation /// 0045295 // gamma-catenin binding // not recorded 1386948_at NM_012987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012987.1 /DB_XREF=gi:6981261 /GEN=Nes /FEA=FLmRNA /CNT=20 /TID=Rn.9701.1 /TIER=FL+Stack /STK=16 /UG=Rn.9701 /LL=25491 /DEF=Rattus norvegicus Nestin (Nes), mRNA. /PROD=nestin /FL=gb:NM_012987.1 gb:M34384.1 NM_012987 nestin Nes 25491 NM_012987 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0010212 // response to ionizing radiation // inferred from expression pattern /// 0030182 // neuron differentiation // non-traceable author statement /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0048858 // cell projection morphogenesis // inferred from electronic annotation /// 0048858 // cell projection morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005882 // intermediate filament // inferred from direct assay /// 0005882 // intermediate filament // not recorded /// 0005882 // intermediate filament // inferred from electronic annotation /// 0045111 // intermediate filament cytoskeleton // not recorded /// 0045111 // intermediate filament cytoskeleton // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 1386949_a_at AJ132046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ132046.1 /DB_XREF=gi:4490566 /GEN=zg29 /FEA=mRNA /CNT=2 /TID=Rn.5840.2 /TIER=ConsEnd /STK=0 /UG=Rn.5840 /LL=64520 /DEF=Rattus norvegicus mRNA for ZG29p. /PROD=ZG29p AJ132046 metastasis associated 1 Mta1 64520 NM_022588 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0033363 // secretory granule organization // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016581 // NuRD complex // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386950_at NM_013065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013065.1 /DB_XREF=gi:6981387 /GEN=Ppp1cb /FEA=FLmRNA /CNT=22 /TID=Rn.6529.1 /TIER=FL+Stack /STK=16 /UG=Rn.6529 /LL=25594 /DEF=Rattus norvegicus Protein phosphatase 1, catalytic subunit, beta isoform (Ppp1cb), mRNA. /PROD=protein phosphatase 1, catalytic subunit, betaisoform /FL=gb:NM_013065.1 gb:D90164.1 NM_013065 protein phosphatase 1, catalytic subunit, beta isoform Ppp1cb 25594 NM_013065 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005979 // regulation of glycogen biosynthetic process // inferred from direct assay /// 0005981 // regulation of glycogen catabolic process // inferred from direct assay /// 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000164 // protein phosphatase type 1 complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0042587 // glycogen granule // inferred from direct assay /// 0070688 // MLL5-L complex // inferred from electronic annotation /// 0070688 // MLL5-L complex // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // not recorded /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017018 // myosin phosphatase activity // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1386951_at NM_012985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012985.1 /DB_XREF=gi:6981259 /GEN=Ndufa5 /FEA=FLmRNA /CNT=21 /TID=Rn.29882.1 /TIER=FL+Stack /STK=15 /UG=Rn.29882 /LL=25488 /DEF=Rattus norvegicus NADH ubiquinone oxidoreductase subunit B13 (Ndufa5), mRNA. /PROD=NADH ubiquinone oxidoreductase subunit B13 /FL=gb:D86215.1 gb:NM_012985.1 NM_012985 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 5 Ndufa5 25488 NM_012985 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0016651 // oxidoreductase activity, acting on NADH or NADPH // inferred from electronic annotation 1386952_a_at NM_053880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053880.1 /DB_XREF=gi:16758747 /GEN=Dnci2 /FEA=FLmRNA /CNT=35 /TID=Rn.11014.1 /TIER=FL+Stack /STK=15 /UG=Rn.11014 /LL=116659 /DEF=Rattus norvegicus dynein, cytoplasmic, intermediate polypeptide 2 (Dnci2), mRNA. /PROD=dynein, cytoplasmic, intermediate polypeptide 2 /FL=gb:U39044.1 gb:NM_053880.1 gb:U39045.1 NM_053880 dynein cytoplasmic 1 intermediate chain 2 Dync1i2 116659 NM_053880 0006810 // transport // inferred from electronic annotation /// 0007018 // microtubule-based movement // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0030286 // dynein complex // inferred from electronic annotation 0003774 // motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction 1386953_at NM_017080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017080.1 /DB_XREF=gi:8393569 /GEN=Hsd11b1 /FEA=FLmRNA /CNT=23 /TID=Rn.888.1 /TIER=FL+Stack /STK=15 /UG=Rn.888 /LL=25116 /DEF=Rattus norvegicus Hydroxysteroid dehydrogenase, 11 beta type 1 (Hsd11b1), mRNA. /PROD=hydroxysteroid dehydrogenase, 11 beta type 1 /FL=gb:J05107.1 gb:NM_017080.1 NM_017080 hydroxysteroid 11-beta dehydrogenase 1 Hsd11b1 25116 NM_017080 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // not recorded /// 0006704 // glucocorticoid biosynthetic process // inferred from direct assay /// 0006713 // glucocorticoid catabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0043456 // regulation of pentose-phosphate shunt // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay /// 0045177 // apical part of cell // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0003845 // 11-beta-hydroxysteroid dehydrogenase activity // inferred from direct assay /// 0003845 // 11-beta-hydroxysteroid dehydrogenase activity // inferred from mutant phenotype /// 0003845 // 11-beta-hydroxysteroid dehydrogenase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005496 // steroid binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from direct assay /// 0070524 // 11-beta-hydroxysteroid dehydrogenase (NADP+) activity // inferred from electronic annotation 1386954_at NM_030986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030986.1 /DB_XREF=gi:13591871 /GEN=Ak2 /FEA=FLmRNA /CNT=21 /TID=Rn.3421.1 /TIER=FL+Stack /STK=15 /UG=Rn.3421 /LL=24184 /DEF=Rattus norvegicus Adenylate kinase 2 (Ak2), mRNA. /PROD=adenylate kinase 2 /FL=gb:NM_030986.1 gb:D13061.1 NM_030986 adenylate kinase 2 Ak2 24184 NM_001033967 /// NM_030986 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0046083 // adenine metabolic process // traceable author statement 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004017 // adenylate kinase activity // traceable author statement /// 0004017 // adenylate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016776 // phosphotransferase activity, phosphate group as acceptor // inferred from electronic annotation /// 0019201 // nucleotide kinase activity // inferred from electronic annotation /// 0019205 // nucleobase, nucleoside, nucleotide kinase activity // inferred from electronic annotation 1386955_at BM387903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387903 /DB_XREF=gi:18187956 /DB_XREF=UI-R-CN1-cjk-n-21-0-UI.s1 /CLONE=UI-R-CN1-cjk-n-21-0-UI /FEA=FLmRNA /CNT=41 /TID=Rn.48837.1 /TIER=Stack /STK=14 /UG=Rn.48837 /LL=116728 /UG_GENE=Pnutl1 /UG_TITLE=peanut (Drosophila)-like 1 /FL=gb:AB027146.1 gb:NM_053931.1 gb:AB027143.1 BM387903 glycoprotein Ib (platelet), beta polypeptide /// septin 5 Gp1bb /// Sept5 116727 /// 116728 NM_053930 /// NM_053931 0007049 // cell cycle // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation /// 0007599 // hemostasis // inferred from electronic annotation /// 0017157 // regulation of exocytosis // not recorded /// 0017157 // regulation of exocytosis // inferred from sequence or structural similarity /// 0045921 // positive regulation of exocytosis // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0001725 // stress fiber // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0008021 // synaptic vesicle // inferred from direct assay /// 0008021 // synaptic vesicle // not recorded /// 0008021 // synaptic vesicle // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0031092 // platelet alpha granule membrane // not recorded /// 0031105 // septin complex // inferred from electronic annotation /// 0031105 // septin complex // inferred from direct assay /// 0032154 // cleavage furrow // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0019003 // GDP binding // inferred from direct assay /// 0019905 // syntaxin binding // inferred from mutant phenotype /// 0035091 // phosphoinositide binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from physical interaction 1386956_at NM_031541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031541.1 /DB_XREF=gi:13928729 /GEN=Cd36l1 /FEA=FLmRNA /CNT=27 /TID=Rn.3142.1 /TIER=FL+Stack /STK=15 /UG=Rn.3142 /LL=25073 /DEF=Rattus norvegicus CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 1 (scavanger receptor class B type 1) (Cd36l1), mRNA. /PROD=scavanger receptor class B type 1 /FL=gb:U76205.1 gb:NM_031541.1 gb:AF071495.1 gb:AB002151.1 gb:D89655.1 NM_031541 scavenger receptor class B, member 1 Scarb1 25073 NM_031541 0001935 // endothelial cell proliferation // inferred from electronic annotation /// 0001935 // endothelial cell proliferation // not recorded /// 0006694 // steroid biosynthetic process // traceable author statement /// 0006702 // androgen biosynthetic process // inferred from direct assay /// 0006707 // cholesterol catabolic process // inferred from electronic annotation /// 0006707 // cholesterol catabolic process // not recorded /// 0006869 // lipid transport // inferred from mutant phenotype /// 0006910 // phagocytosis, recognition // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from electronic annotation /// 0010886 // positive regulation of cholesterol storage // not recorded /// 0010886 // positive regulation of cholesterol storage // inferred from sequence or structural similarity /// 0010886 // positive regulation of cholesterol storage // inferred from electronic annotation /// 0015920 // lipopolysaccharide transport // inferred from electronic annotation /// 0015920 // lipopolysaccharide transport // not recorded /// 0030301 // cholesterol transport // not recorded /// 0030301 // cholesterol transport // inferred from electronic annotation /// 0032497 // detection of lipopolysaccharide // inferred from electronic annotation /// 0032497 // detection of lipopolysaccharide // not recorded /// 0034384 // high-density lipoprotein particle clearance // not recorded /// 0034384 // high-density lipoprotein particle clearance // inferred from sequence or structural similarity /// 0034384 // high-density lipoprotein particle clearance // inferred from electronic annotation /// 0043534 // blood vessel endothelial cell migration // inferred from electronic annotation /// 0043534 // blood vessel endothelial cell migration // not recorded /// 0043654 // recognition of apoptotic cell // inferred from direct assay /// 0043654 // recognition of apoptotic cell // not recorded /// 0043654 // recognition of apoptotic cell // inferred from sequence or structural similarity /// 0043654 // recognition of apoptotic cell // inferred from electronic annotation /// 0043691 // reverse cholesterol transport // not recorded /// 0043691 // reverse cholesterol transport // inferred from sequence or structural similarity /// 0043691 // reverse cholesterol transport // inferred from electronic annotation /// 0050764 // regulation of phagocytosis // inferred from direct assay /// 0050764 // regulation of phagocytosis // traceable author statement /// 0051000 // positive regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051000 // positive regulation of nitric-oxide synthase activity // not recorded /// 0051856 // adhesion to symbiont // inferred from electronic annotation /// 0051856 // adhesion to symbiont // not recorded 0000299 // integral to membrane of membrane fraction // inferred from electronic annotation /// 0000299 // integral to membrane of membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005901 // caveola // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031528 // microvillus membrane // inferred from direct assay 0001530 // lipopolysaccharide binding // not recorded /// 0001530 // lipopolysaccharide binding // inferred from electronic annotation /// 0001786 // phosphatidylserine binding // inferred from direct assay /// 0001786 // phosphatidylserine binding // traceable author statement /// 0001875 // lipopolysaccharide receptor activity // inferred from electronic annotation /// 0001875 // lipopolysaccharide receptor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005319 // lipid transporter activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008035 // high-density lipoprotein binding // not recorded /// 0008035 // high-density lipoprotein binding // inferred from electronic annotation /// 0030169 // low-density lipoprotein binding // not recorded /// 0030169 // low-density lipoprotein binding // inferred from sequence or structural similarity /// 0030169 // low-density lipoprotein binding // inferred from electronic annotation /// 0034185 // apolipoprotein binding // not recorded /// 0034185 // apolipoprotein binding // inferred from electronic annotation /// 0034186 // apolipoprotein A-I binding // inferred from electronic annotation /// 0034186 // apolipoprotein A-I binding // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0070506 // high-density lipoprotein receptor activity // not recorded /// 0070506 // high-density lipoprotein receptor activity // inferred from sequence or structural similarity /// 0070506 // high-density lipoprotein receptor activity // inferred from electronic annotation 1386957_at NM_053622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053622.1 /DB_XREF=gi:16758423 /GEN=Pom121 /FEA=FLmRNA /CNT=21 /TID=Rn.10474.1 /TIER=FL+Stack /STK=15 /UG=Rn.10474 /LL=113975 /DEF=Rattus norvegicus nuclear pore membrane glycoprotein 121 kD (Pom121), mRNA. /PROD=nuclear pore membrane glycoprotein 121 kD /FL=gb:NM_053622.1 NM_053622 nuclear pore membrane protein 121 Pom121 113975 NM_053622 0006810 // transport // inferred from electronic annotation /// 0006999 // nuclear pore organization // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005643 // nuclear pore // inferred from direct assay /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0017056 // structural constituent of nuclear pore // inferred from direct assay 1386958_at U63923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U63923.2 /DB_XREF=gi:8659576 /FEA=FLmRNA /CNT=21 /TID=Rn.9474.1 /TIER=FL /STK=1 /UG=Rn.9474 /LL=58819 /UG_GENE=Txnrd1 /DEF=Rattus norvegicus thioredoxin reductase mRNA, complete cds. /PROD=thioredoxin reductase /FL=gb:NM_031614.1 gb:AF108213.1 gb:AF220760.1 gb:U63923.2 U63923 thioredoxin reductase 1 Txnrd1 58819 NM_031614 0001707 // mesoderm formation // not recorded /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from direct assay /// 0007369 // gastrulation // not recorded /// 0007369 // gastrulation // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0042744 // hydrogen peroxide catabolic process // inferred from mutant phenotype /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0004791 // thioredoxin-disulfide reductase activity // inferred from direct assay /// 0004791 // thioredoxin-disulfide reductase activity // inferred from electronic annotation /// 0004791 // thioredoxin-disulfide reductase activity // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016668 // oxidoreductase activity, acting on a sulfur group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from electronic annotation 1386959_a_at NM_017246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017246.1 /DB_XREF=gi:8393745 /GEN=Map2k5 /FEA=FLmRNA /CNT=19 /TID=Rn.11054.1 /TIER=FL+Stack /STK=15 /UG=Rn.11054 /LL=29568 /DEF=Rattus norvegicus mitogen activated protein kinase kinase 5 (Map2k5), mRNA. /PROD=mitogen activated protein kinase kinase 5 /FL=gb:U37464.1 gb:NM_017246.1 NM_017246 mitogen activated protein kinase kinase 5 Map2k5 29568 NM_001033987 /// NM_017246 0000165 // MAPKKK cascade // inferred by curator /// 0000165 // MAPKKK cascade // not recorded /// 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0050679 // positive regulation of epithelial cell proliferation // inferred from direct assay /// 0070375 // BMK cascade // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005819 // spindle // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004707 // MAP kinase activity // not recorded /// 0004708 // MAP kinase kinase activity // inferred by curator /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386960_at NM_031589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031589.1 /DB_XREF=gi:13928799 /GEN=G6pt1 /FEA=FLmRNA /CNT=18 /TID=Rn.1592.1 /TIER=FL+Stack /STK=15 /UG=Rn.1592 /LL=29573 /DEF=Rattus norvegicus glucose-6-phosphatase, transport protein 1 (G6pt1), mRNA. /PROD=glucose-6-phosphatase, transport protein 1 /FL=gb:AF080468.1 gb:NM_031589.1 NM_031589 solute carrier family 37 (glucose-6-phosphate transporter), member 4 Slc37a4 29573 NM_031589 0001780 // neutrophil homeostasis // inferred from electronic annotation /// 0001780 // neutrophil homeostasis // not recorded /// 0001816 // cytokine production // inferred from electronic annotation /// 0001816 // cytokine production // not recorded /// 0002318 // myeloid progenitor cell differentiation // inferred from electronic annotation /// 0002318 // myeloid progenitor cell differentiation // not recorded /// 0005977 // glycogen metabolic process // not recorded /// 0005977 // glycogen metabolic process // non-traceable author statement /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0006089 // lactate metabolic process // inferred from electronic annotation /// 0006089 // lactate metabolic process // not recorded /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // not recorded /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0015760 // glucose-6-phosphate transport // inferred from mutant phenotype /// 0015760 // glucose-6-phosphate transport // not recorded /// 0015760 // glucose-6-phosphate transport // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // not recorded /// 0032682 // negative regulation of chemokine production // inferred from electronic annotation /// 0032682 // negative regulation of chemokine production // not recorded /// 0035166 // post-embryonic hemopoiesis // inferred from electronic annotation /// 0035166 // post-embryonic hemopoiesis // not recorded /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042593 // glucose homeostasis // not recorded /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0043085 // positive regulation of catalytic activity // inferred from electronic annotation /// 0043085 // positive regulation of catalytic activity // not recorded /// 0045730 // respiratory burst // inferred from electronic annotation /// 0045730 // respiratory burst // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded 0005215 // transporter activity // inferred from electronic annotation /// 0015152 // glucose-6-phosphate transmembrane transporter activity // inferred from mutant phenotype /// 0015152 // glucose-6-phosphate transmembrane transporter activity // not recorded 1386961_at BI291434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291434 /DB_XREF=gi:14950970 /DB_XREF=UI-R-CV2-cgq-c-04-0-UI.s1 /CLONE=UI-R-CV2-cgq-c-04-0-UI /FEA=FLmRNA /CNT=25 /TID=Rn.11004.1 /TIER=Stack /STK=7 /UG=Rn.11004 /LL=65152 /UG_GENE=Pfkm /UG_TITLE=phosphofructokinase, muscle /FL=gb:U25651.1 gb:NM_031715.1 BI291434 phosphofructokinase, muscle Pfkm 65152 NM_031715 0001678 // cellular glucose homeostasis // non-traceable author statement /// 0006002 // fructose 6-phosphate metabolic process // inferred from direct assay /// 0006002 // fructose 6-phosphate metabolic process // not recorded /// 0006002 // fructose 6-phosphate metabolic process // inferred from electronic annotation /// 0006096 // glycolysis // inferred from direct assay /// 0006096 // glycolysis // not recorded /// 0006096 // glycolysis // inferred from electronic annotation /// 0030388 // fructose 1,6-bisphosphate metabolic process // inferred from direct assay /// 0032024 // positive regulation of insulin secretion // inferred from electronic annotation /// 0032024 // positive regulation of insulin secretion // not recorded /// 0042593 // glucose homeostasis // not recorded /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0046716 // muscle cell homeostasis // inferred from electronic annotation /// 0046716 // muscle cell homeostasis // not recorded /// 0046835 // carbohydrate phosphorylation // not recorded /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0051259 // protein oligomerization // not recorded /// 0051289 // protein homotetramerization // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005945 // 6-phosphofructokinase complex // inferred from electronic annotation /// 0005945 // 6-phosphofructokinase complex // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003872 // 6-phosphofructokinase activity // inferred from direct assay /// 0003872 // 6-phosphofructokinase activity // not recorded /// 0003872 // 6-phosphofructokinase activity // inferred from sequence or structural similarity /// 0003872 // 6-phosphofructokinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from direct assay /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008443 // phosphofructokinase activity // inferred from mutant phenotype /// 0008443 // phosphofructokinase activity // not recorded /// 0008443 // phosphofructokinase activity // non-traceable author statement /// 0008443 // phosphofructokinase activity // inferred from electronic annotation /// 0016208 // AMP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019900 // kinase binding // inferred from electronic annotation /// 0019900 // kinase binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070061 // fructose binding // not recorded /// 0070061 // fructose binding // inferred from electronic annotation /// 0070095 // fructose-6-phosphate binding // inferred from direct assay 1386962_at NM_024353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024353.1 /DB_XREF=gi:13242240 /GEN=Plcb4 /FEA=FLmRNA /CNT=21 /TID=Rn.6155.1 /TIER=FL+Stack /STK=15 /UG=Rn.6155 /LL=25031 /DEF=Rattus norvegicus Phospholipase C , beta4 (Plcb4), mRNA. /PROD=phospholipase C (BETA4) /FL=gb:L15556.1 gb:NM_024353.1 NM_024353 phospholipase C, beta 4 Plcb4 25031 NM_024353 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007602 // phototransduction // non-traceable author statement /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0043267 // negative regulation of potassium ion transport // inferred from mutant phenotype 0005626 // insoluble fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005790 // smooth endoplasmic reticulum // not recorded /// 0005792 // microsome // not recorded /// 0005829 // cytosol // not recorded /// 0014069 // postsynaptic density // not recorded /// 0030425 // dendrite // not recorded 0004435 // phosphoinositide phospholipase C activity // inferred from electronic annotation /// 0004629 // phospholipase C activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0051019 // mitogen-activated protein kinase binding // inferred from physical interaction 1386963_at NM_053920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053920.1 /DB_XREF=gi:16758799 /GEN=Trip10 /FEA=FLmRNA /CNT=18 /TID=Rn.10814.1 /TIER=FL+Stack /STK=15 /UG=Rn.10814 /LL=116717 /DEF=Rattus norvegicus thyroid hormone receptor interactor 10 (Trip10), mRNA. /PROD=thyroid hormone receptor interactor 10 /FL=gb:NM_053920.1 gb:AB006914.1 NM_053920 thyroid hormone receptor interactor 10 Trip10 116717 NM_053920 0006897 // endocytosis // inferred from electronic annotation /// 0042538 // hyperosmotic salinity response // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1386964_at NM_080775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080775.1 /DB_XREF=gi:18158440 /GEN=Smgb /FEA=FLmRNA /CNT=16 /TID=Rn.9925.1 /TIER=FL+Stack /STK=15 /UG=Rn.9925 /LL=54303 /DEF=Rattus norvegicus Neonatal submandibular gland protein B (Smgb), mRNA. /PROD=Neonatal submandibular gland protein B /FL=gb:NM_080775.1 gb:M83210.1 NM_080775 neonatal submandibular gland protein B Smgb 54303 NM_080775 0008289 // lipid binding // inferred from electronic annotation 1386965_at NM_012598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012598.1 /DB_XREF=gi:6981167 /GEN=Lpl /FEA=FLmRNA /CNT=41 /TID=Rn.3834.1 /TIER=FL+Stack /STK=14 /UG=Rn.3834 /LL=24539 /DEF=Rattus norvegicus Lipoprotein lipase (Lpl), mRNA. /PROD=lipoprotein lipase /FL=gb:L03294.1 gb:NM_012598.1 NM_012598 lipoprotein lipase Lpl 24539 NM_012598 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // not recorded /// 0010744 // positive regulation of macrophage derived foam cell differentiation // inferred from electronic annotation /// 0010744 // positive regulation of macrophage derived foam cell differentiation // not recorded /// 0010886 // positive regulation of cholesterol storage // inferred from electronic annotation /// 0010886 // positive regulation of cholesterol storage // not recorded /// 0010890 // positive regulation of sequestering of triglyceride // inferred from electronic annotation /// 0010890 // positive regulation of sequestering of triglyceride // not recorded /// 0016042 // lipid catabolic process // inferred from direct assay /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0019432 // triglyceride biosynthetic process // inferred from mutant phenotype /// 0019433 // triglyceride catabolic process // inferred from electronic annotation /// 0019433 // triglyceride catabolic process // not recorded /// 0034372 // very-low-density lipoprotein particle remodeling // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0070328 // triglyceride homeostasis // inferred from electronic annotation /// 0070328 // triglyceride homeostasis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0034361 // very-low-density lipoprotein particle // inferred from electronic annotation /// 0042627 // chylomicron // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004465 // lipoprotein lipase activity // inferred from direct assay /// 0004465 // lipoprotein lipase activity // not recorded /// 0004465 // lipoprotein lipase activity // inferred from electronic annotation /// 0004806 // triglyceride lipase activity // inferred from electronic annotation /// 0004806 // triglyceride lipase activity // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017129 // triglyceride binding // inferred from direct assay 1386966_a_at NM_021764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021764.1 /DB_XREF=gi:11120717 /GEN=LOC60383 /FEA=FLmRNA /CNT=25 /TID=Rn.37161.1 /TIER=FL+Stack /STK=14 /UG=Rn.37161 /LL=60383 /DEF=Rattus norvegicus protein kinase C-binding protein Beta15 (LOC60383), mRNA. /PROD=protein kinase C-binding protein Beta15 /FL=gb:U48248.1 gb:NM_021764.1 NM_021764 RanBP-type and C3HC4-type zinc finger containing 1 Rbck1 60383 NM_021764 0000209 // protein polyubiquitination // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0042346 // positive regulation of NF-kappaB import into nucleus // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0050852 // T cell receptor signaling pathway // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded 0005622 // intracellular // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005080 // protein kinase C binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386967_at NM_053522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053522.1 /DB_XREF=gi:16758285 /GEN=Tc10 /FEA=FLmRNA /CNT=44 /TID=Rn.4169.1 /TIER=FL+Stack /STK=14 /UG=Rn.4169 /LL=85428 /DEF=Rattus norvegicus ras-like protein (Tc10), mRNA. /PROD=ras-like protein /FL=gb:AB031482.1 gb:NM_053522.1 NM_053522 ras homolog gene family, member Q Rhoq 85428 NM_053522 0006184 // GTP catabolic process // not recorded /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // not recorded /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation /// 0030866 // cortical actin cytoskeleton organization // not recorded /// 0032869 // cellular response to insulin stimulus // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0046326 // positive regulation of glucose import // inferred from electronic annotation /// 0046326 // positive regulation of glucose import // not recorded /// 0051491 // positive regulation of filopodium assembly // inferred from electronic annotation /// 0051491 // positive regulation of filopodium assembly // not recorded /// 0090005 // negative regulation of establishment of protein localization in plasma membrane // inferred from electronic annotation /// 0090005 // negative regulation of establishment of protein localization in plasma membrane // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005884 // actin filament // inferred from electronic annotation /// 0005884 // actin filament // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005522 // profilin binding // inferred from electronic annotation /// 0005522 // profilin binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0032427 // GBD domain binding // inferred from electronic annotation /// 0032427 // GBD domain binding // not recorded 1386968_at NM_022676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022676.1 /DB_XREF=gi:12083614 /GEN=Ppp1r1a /FEA=FLmRNA /CNT=19 /TID=Rn.9756.1 /TIER=FL+Stack /STK=14 /UG=Rn.9756 /LL=58977 /DEF=Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 1A (Ppp1r1a), mRNA. /PROD=protein phosphatase 1, regulatory (inhibitor)subunit 1A /FL=gb:NM_022676.1 gb:J05592.1 NM_022676 protein phosphatase 1, regulatory (inhibitor) subunit 1A Ppp1r1a 58977 NM_022676 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1386969_at NM_053346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053346.1 /DB_XREF=gi:16758969 /GEN=Nrn /FEA=FLmRNA /CNT=39 /TID=Rn.3546.1 /TIER=FL+Stack /STK=14 /UG=Rn.3546 /LL=83834 /DEF=Rattus norvegicus neuritin (Nrn), mRNA. /PROD=neuritin /FL=gb:U88958.1 gb:NM_053346.1 NM_053346 neuritin 1 Nrn1 83834 NM_053346 0007399 // nervous system development // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 1386970_at NM_053950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053950.1 /DB_XREF=gi:16758829 /GEN=Eif2b /FEA=FLmRNA /CNT=21 /TID=Rn.11060.1 /TIER=FL+Stack /STK=14 /UG=Rn.11060 /LL=117019 /DEF=Rattus norvegicus eukaryotic translation initiation factor 2B (Eif2b), mRNA. /PROD=eukaryotic translation initiation factor 2B /FL=gb:NM_053950.1 NM_053950 eukaryotic translation initiation factor 2B, subunit 4 delta Eif2b4 117019 NM_053950 0001541 // ovarian follicle development // not recorded /// 0001541 // ovarian follicle development // inferred from sequence or structural similarity /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // not recorded /// 0006413 // translational initiation // inferred from sequence or structural similarity /// 0006413 // translational initiation // non-traceable author statement /// 0006417 // regulation of translation // inferred from mutant phenotype /// 0009408 // response to heat // inferred from direct assay /// 0009749 // response to glucose stimulus // inferred from direct assay /// 0014003 // oligodendrocyte development // not recorded /// 0014003 // oligodendrocyte development // inferred from sequence or structural similarity /// 0032057 // negative regulation of translational initiation in response to stress // inferred from mutant phenotype /// 0042552 // myelination // not recorded /// 0042552 // myelination // inferred from sequence or structural similarity /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0044237 // cellular metabolic process // inferred from electronic annotation /// 0051716 // cellular response to stimulus // not recorded /// 0051716 // cellular response to stimulus // inferred from sequence or structural similarity 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from direct assay /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from physical interaction /// 0005851 // eukaryotic translation initiation factor 2B complex // not recorded /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from sequence or structural similarity /// 0005851 // eukaryotic translation initiation factor 2B complex // non-traceable author statement /// 0005851 // eukaryotic translation initiation factor 2B complex // traceable author statement 0003743 // translation initiation factor activity // not recorded /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // translation initiation factor activity // non-traceable author statement /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from genetic interaction /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0031369 // translation initiation factor binding // inferred from direct assay 1386971_at NM_022951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022951.1 /DB_XREF=gi:12621125 /GEN=Ppp1r10 /FEA=FLmRNA /CNT=22 /TID=Rn.37758.1 /TIER=FL+Stack /STK=14 /UG=Rn.37758 /LL=65045 /DEF=Rattus norvegicus putative protein phosphatase 1 nuclear targeting subunit (Ppp1r10), mRNA. /PROD=putative protein phosphatase 1 nuclear targetingsubunit /FL=gb:AF040954.1 gb:NM_022951.1 NM_022951 protein phosphatase 1, regulatory subunit 10 Ppp1r10 65045 NM_022951 0006350 // transcription // inferred from electronic annotation /// 0006354 // RNA elongation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from direct assay /// 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008157 // protein phosphatase 1 binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386972_at NM_017228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017228.1 /DB_XREF=gi:8393273 /GEN=Drpla /FEA=FLmRNA /CNT=19 /TID=Rn.11305.1 /TIER=FL+Stack /STK=14 /UG=Rn.11305 /LL=29515 /DEF=Rattus norvegicus dentatorubral pallidoluysian atrophy (Drpla), mRNA. /PROD=dentatorubral pallidoluysian atrophy /FL=gb:NM_017228.1 gb:U31777.1 NM_017228 atrophin 1 Atn1 29515 NM_017228 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0009404 // toxin metabolic process // inferred from electronic annotation /// 0009404 // toxin metabolic process // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0045664 // regulation of neuron differentiation // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008432 // JUN kinase binding // inferred from mutant phenotype /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0050827 // toxin receptor binding // inferred from electronic annotation /// 0050827 // toxin receptor binding // not recorded 1386973_a_at NM_053777 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053777.1 /DB_XREF=gi:16758613 /GEN=Mapk8ip1 /FEA=FLmRNA /CNT=16 /TID=Rn.44266.1 /TIER=FL+Stack /STK=14 /UG=Rn.44266 /LL=116457 /DEF=Rattus norvegicus mitogen-activated protein kinase 8 interacting protein 1 (Mapk8ip1), mRNA. /PROD=mitogen-activated protein kinase 8 interactingprotein 1 /FL=gb:NM_053777.1 gb:AF109774.1 NM_053777 mitogen-activated protein kinase 8 interacting protein 1 Mapk8ip1 116457 NM_053777 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006916 // anti-apoptosis // inferred from direct assay /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from direct assay /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007258 // JUN phosphorylation // inferred from electronic annotation /// 0007258 // JUN phosphorylation // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // not recorded /// 0043508 // negative regulation of JUN kinase activity // inferred from mutant phenotype /// 0046328 // regulation of JNK cascade // not recorded /// 0046328 // regulation of JNK cascade // inferred from sequence or structural similarity /// 0046328 // regulation of JNK cascade // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005078 // MAP-kinase scaffold activity // inferred from mutant phenotype /// 0005078 // MAP-kinase scaffold activity // not recorded /// 0005078 // MAP-kinase scaffold activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008432 // JUN kinase binding // inferred from physical interaction /// 0019894 // kinesin binding // not recorded /// 0019894 // kinesin binding // inferred from sequence or structural similarity /// 0019894 // kinesin binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0031434 // mitogen-activated protein kinase kinase binding // inferred from physical interaction /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from physical interaction 1386974_at NM_134397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134397.1 /DB_XREF=gi:19705516 /GEN=Ll5 /FEA=FLmRNA /CNT=15 /TID=Rn.11128.1 /TIER=FL+Stack /STK=14 /UG=Rn.11128 /LL=171434 /DEF=Rattus norvegicus LL5 protein (Ll5), mRNA. /PROD=LL5 protein /FL=gb:NM_134397.1 NM_134397 pleckstrin homology-like domain, family B, member 1 Phldb1 171434 NM_001191578 /// XM_001067414 /// XM_002727052 /// XM_002727053 /// XM_002729916 /// XM_002729917 /// XM_576401 1386975_at AF237719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF237719.1 /DB_XREF=gi:8895957 /FEA=FLmRNA /CNT=16 /TID=Rn.11363.1 /TIER=FL /STK=1 /UG=Rn.11363 /LL=81530 /UG_GENE=Pdk2 /DEF=Rattus norvegicus PDK2.1 pyruvate dehydrogenase kinase 2 subunit variant p45 mRNA, complete cds. /PROD=PDK2.1 pyruvate dehydrogenase kinase 2 subunitvariant p45 /FL=gb:AF237719.1 gb:U10357.1 gb:NM_030872.1 AF237719 pyruvate dehydrogenase kinase, isozyme 2 Pdk2 81530 NM_030872 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0010510 // regulation of acetyl-CoA biosynthetic process from pyruvate // not recorded /// 0018106 // peptidyl-histidine phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0045254 // pyruvate dehydrogenase complex // inferred from direct assay 0000155 // two-component sensor activity // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0004673 // protein histidine kinase activity // inferred from electronic annotation /// 0004740 // pyruvate dehydrogenase (acetyl-transferring) kinase activity // inferred from direct assay /// 0004740 // pyruvate dehydrogenase (acetyl-transferring) kinase activity // inferred from mutant phenotype /// 0004740 // pyruvate dehydrogenase (acetyl-transferring) kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay 1386976_at NM_031797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031797.1 /DB_XREF=gi:13929127 /GEN=Kai1 /FEA=FLmRNA /CNT=16 /TID=Rn.3022.1 /TIER=FL+Stack /STK=14 /UG=Rn.3022 /LL=83628 /DEF=Rattus norvegicus Kangai 1 (suppression of tumorigenicity 6, prostate; CD82 antigen (R2 leukocyte antigen, antigen detected by monoclonal and antibody IA4)) (Kai1), mRNA. /PROD=kangai 1 (suppression of tumorigenicity 6),prostate /FL=gb:NM_031797.1 gb:AF049882.1 NM_031797 Cd82 molecule Cd82 83628 NM_031797 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1386977_at NM_019292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019292.1 /DB_XREF=gi:9506446 /GEN=Ca3 /FEA=FLmRNA /CNT=32 /TID=Rn.1647.1 /TIER=FL /STK=2 /UG=Rn.1647 /LL=54232 /DEF=Rattus norvegicus carbonic anhydrase 3 (Ca3), mRNA. /PROD=carbonic anhydrase 3 /FL=gb:AB030830.1 gb:AF037072.1 gb:AB030829.1 gb:NM_019292.1 gb:M22413.1 NM_019292 carbonic anhydrase 3 Car3 54232 NM_019292 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation 0004089 // carbonate dehydratase activity // traceable author statement /// 0004089 // carbonate dehydratase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016151 // nickel ion binding // inferred from electronic annotation /// 0016151 // nickel ion binding // not recorded /// 0016829 // lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1386978_at NM_080888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080888.1 /DB_XREF=gi:18266687 /GEN=Bnip3l /FEA=FLmRNA /CNT=39 /TID=Rn.827.1 /TIER=FL+Stack /STK=13 /UG=Rn.827 /DEF=Rattus norvegicus BCL2adenovirus E1B 19 kDa-interacting protein 3-like (Bnip3l), mRNA. /PROD=BCL2adenovirus E1B 19 kDa-interacting protein3-like /FL=gb:AB077364.1 gb:NM_080888.1 gb:AF441118.1 NM_080888 BCL2/adenovirus E1B interacting protein 3-like Bnip3l 140923 NM_080888 0006917 // induction of apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from sequence or structural similarity /// 0008634 // negative regulation of survival gene product expression // not recorded /// 0008634 // negative regulation of survival gene product expression // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0051607 // defense response to virus // not recorded /// 0051607 // defense response to virus // inferred from sequence or structural similarity 0005635 // nuclear envelope // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005740 // mitochondrial envelope // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005521 // lamin binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1386979_at NM_133395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133395.1 /DB_XREF=gi:19173751 /GEN=Tpo1 /FEA=FLmRNA /CNT=25 /TID=Rn.4099.1 /TIER=FL+Stack /STK=13 /UG=Rn.4099 /LL=170907 /DEF=Rattus norvegicus developmentally regulated protein TPO1 (Tpo1), mRNA. /PROD=developmentally regulated protein TPO1 /FL=gb:NM_133395.1 gb:L20319.1 NM_133395 serine incorporator 5 Serinc5 170907 NM_133395 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006658 // phosphatidylserine metabolic process // inferred from direct assay /// 0006665 // sphingolipid metabolic process // inferred from sequence or structural similarity /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0015825 // L-serine transport // inferred from sequence or structural similarity /// 0042552 // myelination // inferred from expression pattern /// 0042552 // myelination // not recorded /// 0042552 // myelination // inferred from electronic annotation /// 0051347 // positive regulation of transferase activity // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043209 // myelin sheath // inferred from electronic annotation /// 0043209 // myelin sheath // not recorded 0015194 // L-serine transmembrane transporter activity // inferred from sequence or structural similarity 1386980_at NM_019373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019373.1 /DB_XREF=gi:9506390 /GEN=Apom /FEA=FLmRNA /CNT=20 /TID=Rn.262.1 /TIER=FL+Stack /STK=13 /UG=Rn.262 /LL=55939 /DEF=Rattus norvegicus apolipoprotein M (Apom), mRNA. /PROD=apolipoprotein M /FL=gb:NM_019373.1 gb:AF207821.1 NM_019373 apolipoprotein M Apom 55939 NM_019373 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0033344 // cholesterol efflux // inferred from electronic annotation /// 0033344 // cholesterol efflux // not recorded /// 0034375 // high-density lipoprotein particle remodeling // inferred from electronic annotation /// 0034375 // high-density lipoprotein particle remodeling // not recorded /// 0034380 // high-density lipoprotein particle assembly // inferred from electronic annotation /// 0034380 // high-density lipoprotein particle assembly // not recorded /// 0034384 // high-density lipoprotein particle clearance // inferred from electronic annotation /// 0034384 // high-density lipoprotein particle clearance // not recorded /// 0042157 // lipoprotein metabolic process // inferred from electronic annotation /// 0042157 // lipoprotein metabolic process // not recorded /// 0043691 // reverse cholesterol transport // inferred from electronic annotation /// 0043691 // reverse cholesterol transport // not recorded /// 0060588 // negative regulation of lipoprotein lipid oxidation // inferred from electronic annotation /// 0060588 // negative regulation of lipoprotein lipid oxidation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0034361 // very-low-density lipoprotein particle // inferred from electronic annotation /// 0034361 // very-low-density lipoprotein particle // not recorded /// 0034362 // low-density lipoprotein particle // inferred from electronic annotation /// 0034362 // low-density lipoprotein particle // not recorded /// 0034364 // high-density lipoprotein particle // inferred from electronic annotation /// 0034365 // discoidal high-density lipoprotein particle // inferred from electronic annotation /// 0034365 // discoidal high-density lipoprotein particle // not recorded /// 0034366 // spherical high-density lipoprotein particle // inferred from electronic annotation /// 0034366 // spherical high-density lipoprotein particle // not recorded 0005319 // lipid transporter activity // inferred from electronic annotation /// 0005319 // lipid transporter activity // not recorded /// 0005488 // binding // inferred from electronic annotation 1386981_at NM_012716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012716.1 /DB_XREF=gi:6981541 /GEN=Slc16a1 /FEA=FLmRNA /CNT=23 /TID=Rn.6085.1 /TIER=FL+Stack /STK=13 /UG=Rn.6085 /LL=25027 /DEF=Rattus norvegicus Solute carrier 16 (monocarboxylic acid transporter), member 1 (Slc16a1), mRNA. /PROD=solute carrier 16 (monocarboxylic acidtransporter), member 1 /FL=gb:D63834.1 gb:NM_012716.1 NM_012716 solute carrier family 16, member 1 (monocarboxylic acid transporter 1) Slc16a1 25027 NM_012716 0006810 // transport // inferred from electronic annotation /// 0015711 // organic anion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0015355 // secondary active monocarboxylate transmembrane transporter activity // inferred from electronic annotation 1386982_at NM_053604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053604.1 /DB_XREF=gi:16758391 /GEN=Mgat2 /FEA=FLmRNA /CNT=20 /TID=Rn.2342.1 /TIER=FL+Stack /STK=13 /UG=Rn.2342 /LL=94273 /DEF=Rattus norvegicus mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (Mgat2), mRNA. /PROD=mannosyl (alpha-1,6-)-glycoproteinbeta-1,2-N-acetylglucosaminyltransferase /FL=gb:NM_053604.1 gb:U21662.1 NM_053604 mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase Mgat2 94273 NM_053604 0006487 // protein N-linked glycosylation // inferred from direct assay /// 0009312 // oligosaccharide biosynthetic process // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005529 // sugar binding // inferred from physical interaction /// 0008455 // alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity // inferred from direct assay /// 0008455 // alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity // not recorded /// 0008455 // alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1386983_at NM_013168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013168.1 /DB_XREF=gi:6981023 /GEN=Hmbs /FEA=FLmRNA /CNT=19 /TID=Rn.11080.1 /TIER=FL+Stack /STK=13 /UG=Rn.11080 /LL=25709 /DEF=Rattus norvegicus Hydroxymethylbilane synthase (Hmbs), mRNA. /PROD=hydroxymethylbilane synthase /FL=gb:NM_013168.1 NM_013168 hydroxymethylbilane synthase Hmbs 25709 NM_013168 0001666 // response to hypoxia // inferred from expression pattern /// 0006779 // porphyrin biosynthetic process // inferred from electronic annotation /// 0006783 // heme biosynthetic process // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0009743 // response to carbohydrate stimulus // inferred from expression pattern /// 0010038 // response to metal ion // inferred from expression pattern /// 0010043 // response to zinc ion // inferred from expression pattern /// 0010288 // response to lead ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0018160 // peptidyl-pyrromethane cofactor linkage // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from expression pattern /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032025 // response to cobalt ion // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0033014 // tetrapyrrole biosynthetic process // inferred from direct assay /// 0033014 // tetrapyrrole biosynthetic process // inferred from mutant phenotype /// 0033014 // tetrapyrrole biosynthetic process // inferred from electronic annotation /// 0033273 // response to vitamin // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0048708 // astrocyte differentiation // inferred from expression pattern /// 0051597 // response to methylmercury // inferred from expression pattern /// 0071236 // cellular response to antibiotic // inferred from expression pattern /// 0071243 // cellular response to arsenic // inferred from expression pattern /// 0071284 // cellular response to lead ion // inferred from expression pattern /// 0071345 // cellular response to cytokine stimulus // inferred from expression pattern /// 0071418 // cellular response to amine stimulus // inferred from expression pattern /// 0071549 // cellular response to dexamethasone stimulus // inferred from expression pattern 0000793 // condensed chromosome // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0030424 // axon // inferred from direct assay 0004418 // hydroxymethylbilane synthase activity // inferred from direct assay /// 0004418 // hydroxymethylbilane synthase activity // inferred from mutant phenotype /// 0004418 // hydroxymethylbilane synthase activity // not recorded /// 0004418 // hydroxymethylbilane synthase activity // inferred from electronic annotation /// 0004852 // uroporphyrinogen-III synthase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0031406 // carboxylic acid binding // inferred from physical interaction /// 0043176 // amine binding // inferred from physical interaction /// 0050662 // coenzyme binding // inferred from physical interaction 1386984_at NM_019275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019275.1 /DB_XREF=gi:9506874 /GEN=Madh4 /FEA=FLmRNA /CNT=26 /TID=Rn.9774.1 /TIER=FL+Stack /STK=13 /UG=Rn.9774 /LL=50554 /DEF=Rattus norvegicus MAD homolog 4 (Drosophila) (Madh4), mRNA. /PROD=MAD homolog 4 /FL=gb:NM_019275.1 gb:AF056002.1 gb:AB010954.1 NM_019275 SMAD family member 4 Smad4 50554 NM_019275 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // not recorded /// 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007183 // SMAD protein complex assembly // inferred from electronic annotation /// 0007183 // SMAD protein complex assembly // not recorded /// 0007369 // gastrulation // not recorded /// 0007369 // gastrulation // inferred from electronic annotation /// 0007492 // endoderm development // inferred from electronic annotation /// 0007492 // endoderm development // not recorded /// 0007498 // mesoderm development // inferred from electronic annotation /// 0007498 // mesoderm development // not recorded /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from electronic annotation /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0030509 // BMP signaling pathway // not recorded /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0032525 // somite rostral/caudal axis specification // inferred from electronic annotation /// 0032525 // somite rostral/caudal axis specification // not recorded /// 0032909 // regulation of transforming growth factor-beta2 production // inferred from electronic annotation /// 0032909 // regulation of transforming growth factor-beta2 production // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042177 // negative regulation of protein catabolic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048589 // developmental growth // inferred from electronic annotation /// 0048589 // developmental growth // not recorded /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0048729 // tissue morphogenesis // inferred from electronic annotation /// 0048729 // tissue morphogenesis // not recorded /// 0048859 // formation of anatomical boundary // inferred from electronic annotation /// 0048859 // formation of anatomical boundary // not recorded /// 0051098 // regulation of binding // inferred from electronic annotation /// 0051098 // regulation of binding // not recorded /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded /// 0060391 // positive regulation of SMAD protein nuclear translocation // inferred from electronic annotation /// 0060391 // positive regulation of SMAD protein nuclear translocation // not recorded /// 0060395 // SMAD protein signal transduction // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // not recorded /// 0060548 // negative regulation of cell death // inferred from electronic annotation /// 0060548 // negative regulation of cell death // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0032444 // activin responsive factor complex // inferred from electronic annotation /// 0032444 // activin responsive factor complex // not recorded /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005518 // collagen binding // inferred from electronic annotation /// 0005518 // collagen binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0030616 // transforming growth factor beta receptor, common-partner cytoplasmic mediator activity // inferred from electronic annotation /// 0030616 // transforming growth factor beta receptor, common-partner cytoplasmic mediator activity // not recorded /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046332 // SMAD binding // inferred from physical interaction /// 0070411 // I-SMAD binding // inferred from electronic annotation /// 0070411 // I-SMAD binding // not recorded /// 0070412 // R-SMAD binding // inferred from electronic annotation /// 0070412 // R-SMAD binding // not recorded 1386985_at M28241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M28241.1 /DB_XREF=gi:204500 /FEA=FLmRNA /CNT=25 /TID=Rn.625.1 /TIER=FL+Stack /STK=13 /UG=Rn.625 /LL=24424 /UG_GENE=Gstm2 /UG_TITLE=Glutathione-S-transferase, mu type 2 (Yb2) /DEF=Rat glutathione S-transferase mRNA, complete cds. /FL=gb:NM_017014.1 gb:J02810.1 gb:M11719.1 gb:M28241.1 M28241 glutathione S-transferase mu 1 Gstm1 24423 NM_017014 0006749 // glutathione metabolic process // inferred from direct assay /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010226 // response to lithium ion // inferred from expression pattern /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0046677 // response to antibiotic // inferred from expression pattern /// 0050896 // response to stimulus // inferred from electronic annotation 0005576 // extracellular region // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0004364 // glutathione transferase activity // inferred from direct assay /// 0004364 // glutathione transferase activity // inferred from electronic annotation /// 0005496 // steroid binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay 1386986_at NM_053340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053340.1 /DB_XREF=gi:16758057 /GEN=Ogfr /FEA=FLmRNA /CNT=18 /TID=Rn.15740.1 /TIER=FL+Stack /STK=13 /UG=Rn.15740 /LL=83525 /DEF=Rattus norvegicus opioid growth factor receptor (Ogfr), mRNA. /PROD=opioid growth factor receptor /FL=gb:NM_053340.1 gb:AF156878.1 NM_053340 opioid growth factor receptor Ogfr 83525 NM_053340 0040008 // regulation of growth // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1386987_at NM_017020 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017020.1 /DB_XREF=gi:8393596 /GEN=Il6r /FEA=FLmRNA /CNT=20 /TID=Rn.1716.1 /TIER=FL+Stack /STK=13 /UG=Rn.1716 /LL=24499 /DEF=Rattus norvegicus Interleukin 6 receptor (Il6r), mRNA. /PROD=interleukin 6 receptor /FL=gb:M58587.1 gb:NM_017020.1 NM_017020 interleukin 6 receptor, alpha Il6ra 24499 NM_017020 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0010332 // response to gamma radiation // inferred from expression pattern /// 0010536 // positive regulation of activation of Janus kinase activity // inferred from electronic annotation /// 0010536 // positive regulation of activation of Janus kinase activity // not recorded /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0031018 // endocrine pancreas development // inferred from electronic annotation /// 0031018 // endocrine pancreas development // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032717 // negative regulation of interleukin-8 production // inferred from electronic annotation /// 0032717 // negative regulation of interleukin-8 production // not recorded /// 0032722 // positive regulation of chemokine production // inferred from electronic annotation /// 0032722 // positive regulation of chemokine production // not recorded /// 0032755 // positive regulation of interleukin-6 production // inferred from electronic annotation /// 0032755 // positive regulation of interleukin-6 production // not recorded /// 0032966 // negative regulation of collagen biosynthetic process // inferred from electronic annotation /// 0032966 // negative regulation of collagen biosynthetic process // not recorded /// 0034097 // response to cytokine stimulus // inferred from electronic annotation /// 0034097 // response to cytokine stimulus // not recorded /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // inferred from electronic annotation /// 0042517 // positive regulation of tyrosine phosphorylation of Stat3 protein // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0045768 // positive regulation of anti-apoptosis // inferred from electronic annotation /// 0045768 // positive regulation of anti-apoptosis // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050829 // defense response to Gram-negative bacterium // inferred from electronic annotation /// 0050829 // defense response to Gram-negative bacterium // not recorded /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern /// 0070102 // interleukin-6-mediated signaling pathway // inferred from electronic annotation /// 0070102 // interleukin-6-mediated signaling pathway // not recorded /// 0070120 // ciliary neurotrophic factor-mediated signaling pathway // inferred from electronic annotation /// 0070120 // ciliary neurotrophic factor-mediated signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005896 // interleukin-6 receptor complex // inferred from electronic annotation /// 0005896 // interleukin-6 receptor complex // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004897 // ciliary neurotrophic factor receptor activity // inferred from electronic annotation /// 0004897 // ciliary neurotrophic factor receptor activity // not recorded /// 0004915 // interleukin-6 receptor activity // inferred from mutant phenotype /// 0004915 // interleukin-6 receptor activity // not recorded /// 0004915 // interleukin-6 receptor activity // inferred from electronic annotation /// 0005138 // interleukin-6 receptor binding // inferred from electronic annotation /// 0005138 // interleukin-6 receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0019981 // interleukin-6 binding // not recorded /// 0019981 // interleukin-6 binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0070119 // ciliary neurotrophic factor binding // inferred from electronic annotation /// 0070119 // ciliary neurotrophic factor binding // not recorded 1386988_at NM_031801 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031801.1 /DB_XREF=gi:13929135 /GEN=Deaf1 /FEA=FLmRNA /CNT=22 /TID=Rn.11134.1 /TIER=FL+Stack /STK=13 /UG=Rn.11134 /LL=83632 /DEF=Rattus norvegicus DEAF-1 related transcriptional regulator (NUDR) (Deaf1), mRNA. /PROD=DEAF-1 related transcriptional regulator (NUDR) /FL=gb:U59659.1 gb:AF055884.1 gb:NM_031801.1 NM_031801 deformed epidermal autoregulatory factor 1 (Drosophila) Deaf1 83632 NM_031801 0001843 // neural tube closure // not recorded /// 0001843 // neural tube closure // inferred from sequence or structural similarity /// 0001843 // neural tube closure // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0033599 // regulation of mammary gland epithelial cell proliferation // not recorded /// 0033599 // regulation of mammary gland epithelial cell proliferation // inferred from sequence or structural similarity /// 0033599 // regulation of mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0048706 // embryonic skeletal system development // not recorded /// 0048706 // embryonic skeletal system development // inferred from sequence or structural similarity /// 0048706 // embryonic skeletal system development // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1386989_at NM_017192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017192.1 /DB_XREF=gi:8393468 /GEN=Edg5 /FEA=FLmRNA /CNT=17 /TID=Rn.2491.1 /TIER=FL+Stack /STK=13 /UG=Rn.2491 /LL=29415 /DEF=Rattus norvegicus endothelial differentiation, sphingolipid G-protein-coupled receptor, 5 (Edg5), mRNA. /PROD=endothelial differentiation, sphingolipidG-protein-coupled receptor, 5 /FL=gb:AB016931.1 gb:U10699.1 gb:NM_017192.1 NM_017192 sphingosine-1-phosphate receptor 2 S1pr2 29415 NM_017192 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007610 // behavior // inferred from electronic annotation /// 0007610 // behavior // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001619 // lysosphingolipid and lysophosphatidic acid receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from direct assay /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1386990_at NM_057137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057137.1 /DB_XREF=gi:16923991 /GEN=Ebp /FEA=FLmRNA /CNT=15 /TID=Rn.19436.1 /TIER=FL+Stack /STK=13 /UG=Rn.19436 /LL=117278 /DEF=Rattus norvegicus phenylalkylamine Ca2+ antagonist (emopamil) binding protein (Ebp), mRNA. /PROD=phenylalkylamine Ca2+ antagonist (emopamil)binding protein /FL=gb:NM_057137.1 gb:AF071501.1 NM_057137 emopamil binding protein (sterol isomerase) Ebp 117278 NM_057137 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from direct assay /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0016125 // sterol metabolic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // not recorded /// 0016126 // sterol biosynthetic process // traceable author statement /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000247 // C-8 sterol isomerase activity // inferred from direct assay /// 0000247 // C-8 sterol isomerase activity // not recorded /// 0000247 // C-8 sterol isomerase activity // traceable author statement /// 0000247 // C-8 sterol isomerase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0047750 // cholestenol delta-isomerase activity // inferred from electronic annotation 1386991_a_at AF279911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF279911.1 /DB_XREF=gi:9652177 /GEN=Bad-beta /FEA=FLmRNA /CNT=5 /TID=Rn.36696.2 /TIER=FL /STK=5 /UG=Rn.36696 /LL=64639 /DEF=Rattus norvegicus bcl-2 associated death agonist beta (Bad-beta) mRNA, complete cds. /PROD=bcl-2 associated death agonist beta /FL=gb:AF279911.1 AF279911 BCL2-associated agonist of cell death Bad 64639 NM_022698 0001666 // response to hypoxia // inferred from expression pattern /// 0006007 // glucose catabolic process // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from mutant phenotype /// 0006917 // induction of apoptosis // not recorded /// 0008283 // cell proliferation // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0034201 // response to oleic acid // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0042593 // glucose homeostasis // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043281 // regulation of caspase activity // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0045579 // positive regulation of B cell differentiation // not recorded /// 0045582 // positive regulation of T cell differentiation // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0019901 // protein kinase binding // not recorded /// 0030346 // protein phosphatase 2B binding // inferred from physical interaction /// 0043422 // protein kinase B binding // inferred from physical interaction 1386992_at NM_017175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017175.1 /DB_XREF=gi:8394046 /GEN=Prkcl1 /FEA=FLmRNA /CNT=13 /TID=Rn.10071.1 /TIER=FL+Stack /STK=13 /UG=Rn.10071 /LL=29355 /DEF=Rattus norvegicus protein kinase C-like 1 (Prkcl1), mRNA. /PROD=protein kinase C-like 1 /FL=gb:NM_017175.1 gb:L35634.1 gb:D26180.1 NM_017175 protein kinase N1 Pkn1 29355 NM_017175 0006350 // transcription // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006972 // hyperosmotic response // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0034339 // regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor // not recorded /// 0034339 // regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor // inferred from sequence or structural similarity /// 0035407 // histone H3-T11 phosphorylation // not recorded /// 0035407 // histone H3-T11 phosphorylation // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from sequence or structural similarity /// 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0005080 // protein kinase C binding // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017049 // GTP-Rho binding // not recorded /// 0017049 // GTP-Rho binding // inferred from sequence or structural similarity /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from sequence or structural similarity /// 0035402 // histone kinase activity (H3-T11 specific) // not recorded /// 0035402 // histone kinase activity (H3-T11 specific) // inferred from sequence or structural similarity /// 0042393 // histone binding // not recorded /// 0042393 // histone binding // inferred from sequence or structural similarity /// 0042826 // histone deacetylase binding // not recorded /// 0042826 // histone deacetylase binding // inferred from sequence or structural similarity /// 0048365 // Rac GTPase binding // not recorded /// 0048365 // Rac GTPase binding // inferred from sequence or structural similarity /// 0050681 // androgen receptor binding // not recorded /// 0050681 // androgen receptor binding // inferred from sequence or structural similarity 1386993_at NM_017240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017240.1 /DB_XREF=gi:8393806 /GEN=Myh7 /FEA=FLmRNA /CNT=62 /TID=Rn.48663.1 /TIER=FL+Stack /STK=12 /UG=Rn.48663 /LL=29557 /DEF=Rattus norvegicus myosin heavy chain, cardiac muscle, fetal (Myh7), mRNA. /PROD=myosin heavy chain, cardiac muscle, fetal /FL=gb:NM_017240.1 NM_017240 myosin, heavy chain 7, cardiac muscle, beta Myh7 29557 NM_017240 0000302 // response to reactive oxygen species // inferred from expression pattern /// 0002027 // regulation of heart rate // inferred from electronic annotation /// 0002027 // regulation of heart rate // not recorded /// 0006200 // ATP catabolic process // inferred from mutant phenotype /// 0006200 // ATP catabolic process // not recorded /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006936 // muscle contraction // inferred from mutant phenotype /// 0006936 // muscle contraction // not recorded /// 0007512 // adult heart development // inferred from electronic annotation /// 0007512 // adult heart development // not recorded /// 0030049 // muscle filament sliding // inferred from electronic annotation /// 0030049 // muscle filament sliding // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005859 // muscle myosin complex // inferred from direct assay /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0016459 // myosin complex // not recorded /// 0016459 // myosin complex // inferred from electronic annotation /// 0030016 // myofibril // inferred from electronic annotation /// 0030016 // myofibril // not recorded /// 0032982 // myosin filament // inferred from electronic annotation /// 0043292 // contractile fiber // inferred from mutant phenotype 0000146 // microfilament motor activity // inferred from mutant phenotype /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from electronic annotation /// 0008307 // structural constituent of muscle // inferred from electronic annotation /// 0008307 // structural constituent of muscle // not recorded /// 0016887 // ATPase activity // inferred from mutant phenotype /// 0016887 // ATPase activity // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0030898 // actin-dependent ATPase activity // inferred from electronic annotation /// 0030898 // actin-dependent ATPase activity // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay 1386994_at NM_017259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017259.1 /DB_XREF=gi:8393001 /GEN=Btg2 /FEA=FLmRNA /CNT=41 /TID=Rn.27923.1 /TIER=FL+Stack /STK=12 /UG=Rn.27923 /LL=29619 /DEF=Rattus norvegicus Early induced gene, B-cell translocation gene 2 (Btg2), mRNA. /PROD=Early induced gene, B-cell translocation gene 2 /FL=gb:M60921.1 gb:NM_017259.1 NM_017259 BTG family, member 2 Btg2 29619 NM_017259 0006350 // transcription // inferred from electronic annotation /// 0006479 // protein methylation // inferred from electronic annotation /// 0006479 // protein methylation // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030182 // neuron differentiation // inferred from direct assay /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0051602 // response to electrical stimulus // inferred from expression pattern 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1386995_at BI288701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288701 /DB_XREF=gi:14945544 /DB_XREF=UI-R-DK0-cdd-h-12-0-UI.s1 /CLONE=UI-R-DK0-cdd-h-12-0-UI /FEA=FLmRNA /CNT=41 /TID=Rn.27923.1 /TIER=Stack /STK=7 /UG=Rn.27923 /LL=29619 /UG_GENE=Btg2 /UG_TITLE=B-cell translocation gene 2, anti-proliferative /FL=gb:M60921.1 gb:NM_017259.1 BI288701 BTG family, member 2 Btg2 29619 NM_017259 0006350 // transcription // inferred from electronic annotation /// 0006479 // protein methylation // inferred from electronic annotation /// 0006479 // protein methylation // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030182 // neuron differentiation // inferred from direct assay /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0051602 // response to electrical stimulus // inferred from expression pattern 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1386996_at D14688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D14688.1 /DB_XREF=gi:473730 /FEA=FLmRNA /CNT=23 /TID=Rn.32315.1 /TIER=FL+Stack /STK=12 /UG=Rn.32315 /LL=50685 /UG_GENE=MRLCB /DEF=Rattus norvegicus mRNA for myosin regulatory light chain, complete cds. /PROD=myosin regulatory light chain /FL=gb:NM_017343.1 gb:D14688.1 D14688 myosin, light chain 12B, regulatory Myl12b 50685 NM_017343 0006936 // muscle contraction // not recorded 0016459 // myosin complex // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045177 // apical part of cell // not recorded 0003774 // motor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1386997_at BF567962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567962 /DB_XREF=gi:11677692 /DB_XREF=UI-R-BO0-ahw-c-10-0-UI.r1 /CLONE=UI-R-BO0-ahw-c-10-0-UI /FEA=FLmRNA /CNT=26 /TID=Rn.11275.1 /TIER=ConsEnd /STK=0 /UG=Rn.11275 /LL=117045 /UG_GENE=Eif4e /UG_TITLE=eukaryotic translation initiation factor 4E /FL=gb:NM_053974.1 BF567962 eukaryotic translation initiation factor 4E Eif4e 117045 NM_053974 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // traceable author statement /// 0006413 // translational initiation // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005845 // mRNA cap binding complex // not recorded /// 0005845 // mRNA cap binding complex // inferred from sequence or structural similarity /// 0016281 // eukaryotic translation initiation factor 4F complex // inferred from direct assay /// 0016281 // eukaryotic translation initiation factor 4F complex // inferred from mutant phenotype /// 0043234 // protein complex // inferred from direct assay /// 0043234 // protein complex // inferred from mutant phenotype 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // translation initiation factor activity // traceable author statement /// 0005515 // protein binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0031370 // eukaryotic initiation factor 4G binding // inferred from mutant phenotype /// 0031370 // eukaryotic initiation factor 4G binding // inferred from physical interaction 1386998_at NM_012497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012497.1 /DB_XREF=gi:6978488 /GEN=Aldoc /FEA=FLmRNA /CNT=20 /TID=Rn.11211.1 /TIER=FL+Stack /STK=12 /UG=Rn.11211 /LL=24191 /DEF=Rattus norvegicus Aldolase C, fructose-biphosphate (Aldoc), mRNA. /PROD=aldolase C, fructose-biphosphate /FL=gb:NM_012497.1 NM_012497 aldolase C, fructose-bisphosphate Aldoc 24191 NM_012497 0001666 // response to hypoxia // inferred from expression pattern /// 0006096 // glycolysis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from mutant phenotype /// 0007568 // aging // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030388 // fructose 1,6-bisphosphate metabolic process // not recorded /// 0030388 // fructose 1,6-bisphosphate metabolic process // inferred from sequence or structural similarity /// 0030388 // fructose 1,6-bisphosphate metabolic process // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from expression pattern /// 0051289 // protein homotetramerization // inferred from direct assay /// 0051290 // protein heterotetramerization // inferred from physical interaction 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0030424 // axon // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004332 // fructose-bisphosphate aldolase activity // inferred from direct assay /// 0004332 // fructose-bisphosphate aldolase activity // inferred from electronic annotation /// 0004332 // fructose-bisphosphate aldolase activity // not recorded /// 0004332 // fructose-bisphosphate aldolase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // not recorded /// 0016829 // lyase activity // inferred from electronic annotation 1386999_at BG380730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380730 /DB_XREF=gi:13305202 /DB_XREF=UI-R-CT0-bua-g-06-0-UI.s1 /CLONE=UI-R-CT0-bua-g-06-0-UI /FEA=FLmRNA /CNT=37 /TID=Rn.8653.1 /TIER=Stack /STK=8 /UG=Rn.8653 /LL=56011 /UG_GENE=Ywhab /UG_TITLE=14-3-3 protein beta-subtype /FL=gb:D17446.1 gb:NM_019377.1 BG380730 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide Ywhab 56011 NM_019377 0006605 // protein targeting // inferred from electronic annotation /// 0006605 // protein targeting // not recorded /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0016481 // negative regulation of transcription // inferred from mutant phenotype /// 0035308 // negative regulation of protein dephosphorylation // inferred from electronic annotation /// 0035308 // negative regulation of protein dephosphorylation // not recorded /// 0043085 // positive regulation of catalytic activity // inferred from electronic annotation /// 0043085 // positive regulation of catalytic activity // not recorded /// 0051220 // cytoplasmic sequestering of protein // inferred from electronic annotation /// 0051220 // cytoplasmic sequestering of protein // not recorded /// 0051291 // protein heterooligomerization // inferred from physical interaction 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0017053 // transcriptional repressor complex // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0003714 // transcription corepressor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded /// 0050815 // phosphoserine binding // inferred from electronic annotation /// 0050815 // phosphoserine binding // not recorded /// 0051219 // phosphoprotein binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // not recorded 1387000_at NM_019385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019385.1 /DB_XREF=gi:9506750 /GEN=GRASP65 /FEA=FLmRNA /CNT=19 /TID=Rn.119.1 /TIER=FL+Stack /STK=12 /UG=Rn.119 /LL=56082 /DEF=Rattus norvegicus golgi peripheral membrane protein p65 (GRASP65), mRNA. /PROD=golgi peripheral membrane protein p65 /FL=gb:NM_019385.1 gb:AF015264.2 NM_019385 golgi reassembly stacking protein 1 Gorasp1 56082 NM_019385 0006810 // transport // inferred from electronic annotation /// 0007030 // Golgi organization // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1387001_at NM_053821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053821.1 /DB_XREF=gi:16758669 /GEN=Ralb /FEA=FLmRNA /CNT=20 /TID=Rn.4586.1 /TIER=FL+Stack /STK=12 /UG=Rn.4586 /LL=116546 /DEF=Rattus norvegicus v-ral simian leukemia viral oncogene homolog B (ras related) (Ralb), mRNA. /PROD=v-ral simian leukemia viral oncogene homolog B(ras related) /FL=gb:L19699.1 gb:NM_053821.1 NM_053821 v-ral simian leukemia viral oncogene homolog B (ras related; GTP binding protein) Ralb 116546 NM_053821 0000910 // cytokinesis // not recorded /// 0000910 // cytokinesis // inferred from sequence or structural similarity /// 0001928 // regulation of exocyst assembly // inferred from direct assay /// 0006915 // apoptosis // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded /// 0051301 // cell division // inferred from electronic annotation /// 0060178 // regulation of exocyst localization // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030496 // midbody // not recorded /// 0030496 // midbody // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0005525 // GTP binding // non-traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation 1387002_at NM_053556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053556.1 /DB_XREF=gi:16758327 /GEN=G10 /FEA=FLmRNA /CNT=17 /TID=Rn.8172.1 /TIER=FL+Stack /STK=12 /UG=Rn.8172 /LL=89819 /DEF=Rattus norvegicus maternal G10 transcript (G10), mRNA. /PROD=maternal G10 transcript /FL=gb:AF058791.1 gb:NM_053556.1 NM_053556 BUD31 homolog (S. cerevisiae) Bud31 89819 NM_053556 0005634 // nucleus // inferred from electronic annotation 1387003_at NM_030830 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030830.1 /DB_XREF=gi:13540625 /GEN=Luzp1 /FEA=FLmRNA /CNT=23 /TID=Rn.29930.1 /TIER=FL+Stack /STK=12 /UG=Rn.29930 /LL=79428 /DEF=Rattus norvegicus leucine zipper protein 1 (Luzp1), mRNA. /PROD=leucine zipper protein 1 /FL=gb:NM_030830.1 gb:AF181259.1 NM_030830 leucine zipper protein 1 Luzp1 79428 NM_030830 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 1387004_at NM_031609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031609.1 /DB_XREF=gi:13928831 /GEN=Nbl1 /FEA=FLmRNA /CNT=17 /TID=Rn.4073.1 /TIER=FL+Stack /STK=12 /UG=Rn.4073 /LL=50594 /DEF=Rattus norvegicus Neuroblastoma, suppression of tumorigenicity 1 (DNA segment human D1S1733E) (Nbl1), mRNA. /PROD=neuroblastoma, suppression of tumorigenicity 1 /FL=gb:NM_031609.1 NM_031609 neuroblastoma, suppression of tumorigenicity 1 Nbl1 50594 NM_031609 0005576 // extracellular region // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 1387005_at NM_017320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017320.1 /DB_XREF=gi:8393220 /GEN=Ctss /FEA=FLmRNA /CNT=15 /TID=Rn.11347.1 /TIER=FL+Stack /STK=12 /UG=Rn.11347 /LL=50654 /DEF=Rattus norvegicus cathepsin S (Ctss), mRNA. /PROD=cathepsin S /FL=gb:L03201.1 gb:NM_017320.1 NM_017320 cathepsin S Ctss 50654 NM_017320 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0016020 // membrane // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387006_at NM_012695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012695.1 /DB_XREF=gi:6981565 /GEN=Smp2a /FEA=FLmRNA /CNT=14 /TID=Rn.40124.1 /TIER=FL+Stack /STK=12 /UG=Rn.40124 /LL=24902 /DEF=Rattus norvegicus Rat senescence marker protein 2A gene, exons 1 and 2 (Smp2a), mRNA. /PROD=rat senescence marker protein 2A gene, exons 1and 2 /FL=gb:M33329.1 gb:NM_012695.1 NM_012695 sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring-like 1 Sult2al1 24902 NM_012695 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004027 // alcohol sulfotransferase activity // inferred from electronic annotation /// 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387007_at NM_012959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012959.1 /DB_XREF=gi:6978887 /GEN=Gfra1 /FEA=FLmRNA /CNT=19 /TID=Rn.6281.1 /TIER=FL+Stack /STK=12 /UG=Rn.6281 /LL=25454 /DEF=Rattus norvegicus Glial cell line-derived neurotrophic factor receptor alpha (Gfra1), mRNA. /PROD=glial cell line-derived neurotrophic factorreceptor alpha /FL=gb:AJ002072.1 gb:NM_012959.1 gb:U59486.1 gb:U97142.1 NM_012959 GDNF family receptor alpha 1 Gfra1 25454 NM_012959 0007166 // cell surface receptor linked signaling pathway // traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0046658 // anchored to plasma membrane // traceable author statement 0004872 // receptor activity // inferred from direct assay /// 0004872 // receptor activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from physical interaction 1387008_at NM_022948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022948.1 /DB_XREF=gi:12621119 /GEN=Loc65042 /FEA=FLmRNA /CNT=16 /TID=Rn.37545.1 /TIER=FL+Stack /STK=12 /UG=Rn.37545 /LL=65042 /DEF=Rattus norvegicus tricarboxylate carrier-like protein (Loc65042), mRNA. /PROD=tricarboxylate carrier-like protein /FL=gb:NM_022948.1 gb:AF276997.1 NM_022948 sideroflexin 3 Sfxn3 65042 NM_022948 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006826 // iron ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0005371 // tricarboxylate secondary active transmembrane transporter activity // traceable author statement /// 0008324 // cation transmembrane transporter activity // inferred from electronic annotation 1387009_at NM_019152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019152.1 /DB_XREF=gi:9506460 /GEN=Capn1 /FEA=FLmRNA /CNT=14 /TID=Rn.6037.1 /TIER=FL+Stack /STK=12 /UG=Rn.6037 /LL=29153 /DEF=Rattus norvegicus calpain 1 (Capn1), mRNA. /PROD=calpain 1 /FL=gb:U53858.1 gb:NM_019152.1 NM_019152 calpain 1 Capn1 29153 NM_019152 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0016540 // protein autoprocessing // inferred by curator /// 0016540 // protein autoprocessing // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005626 // insoluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // inferred from direct assay /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387010_s_at NM_017288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017288.1 /DB_XREF=gi:8394244 /GEN=Scn1b /FEA=FLmRNA /CNT=14 /TID=Rn.4958.1 /TIER=FL+Stack /STK=12 /UG=Rn.4958 /LL=29686 /DEF=Rattus norvegicus sodium channel, voltage-gated, type I, beta polypeptide (Scn1b), mRNA. /PROD=sodium channel, voltage-gated, type I, betapolypeptide /FL=gb:NM_017288.1 gb:M91808.1 NM_017288 sodium channel, voltage-gated, type I, beta Scn1b 29686 NM_017288 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0046684 // response to pyrethroid // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017080 // sodium channel regulator activity // inferred from direct assay 1387011_at NM_130741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130741.1 /DB_XREF=gi:18543344 /GEN=Lcn2 /FEA=FLmRNA /CNT=14 /TID=Rn.11303.1 /TIER=FL+Stack /STK=12 /UG=Rn.11303 /LL=170496 /DEF=Rattus norvegicus lipocalin 2 (Lcn2), mRNA. /PROD=lipocalin 2 /FL=gb:NM_130741.1 NM_130741 lipocalin 2 Lcn2 170496 NM_130741 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006826 // iron ion transport // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0009615 // response to virus // inferred from electronic annotation /// 0009615 // response to virus // not recorded /// 0009617 // response to bacterium // inferred from expression pattern /// 0009635 // response to herbicide // inferred from direct assay /// 0009636 // response to toxin // inferred from expression pattern /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0015892 // siderophore-iron transport // not recorded /// 0015892 // siderophore-iron transport // inferred from sequence or structural similarity /// 0031346 // positive regulation of cell projection organization // inferred from direct assay /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0031669 // cellular response to nutrient levels // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // inferred from mutant phenotype /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from sequence or structural similarity /// 0045087 // innate immune response // not recorded /// 0045087 // innate immune response // inferred from sequence or structural similarity /// 0045087 // innate immune response // inferred from electronic annotation /// 0070207 // protein homotrimerization // inferred from direct assay /// 0070301 // cellular response to hydrogen peroxide // inferred from direct assay /// 0071222 // cellular response to lipopolysaccharide // inferred from expression pattern /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005506 // iron ion binding // not recorded /// 0005506 // iron ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay 1387012_at NM_031596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031596.1 /DB_XREF=gi:13928809 /GEN=Sart1 /FEA=FLmRNA /CNT=14 /TID=Rn.25144.1 /TIER=FL+Stack /STK=12 /UG=Rn.25144 /LL=29678 /DEF=Rattus norvegicus squamous cell carcinoma antigen recognized by T-cells (Sart1), mRNA. /PROD=squamous cell carcinoma antigen recognized byT-cells /FL=gb:NM_031596.1 gb:AB014722.1 NM_031596 squamous cell carcinoma antigen recognized by T cells Sart1 29678 NM_031596 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0045585 // positive regulation of cytotoxic T cell differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0015030 // Cajal body // not recorded 1387013_at NM_020976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020976.1 /DB_XREF=gi:10198601 /GEN=NX-17 /FEA=FLmRNA /CNT=14 /TID=Rn.32298.1 /TIER=FL+Stack /STK=12 /UG=Rn.32298 /LL=57395 /DEF=Rattus norvegicus kidney-specific membrane protein (NX-17), mRNA. /PROD=kidney-specific membrane protein /FL=gb:AF178086.1 gb:NM_020976.1 NM_020976 transmembrane protein 27 Tmem27 57395 NM_020976 0006508 // proteolysis // inferred from electronic annotation 0005737 // cytoplasm // traceable author statement /// 0016020 // membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008241 // peptidyl-dipeptidase activity // inferred from electronic annotation 1387014_at NM_133513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133513.1 /DB_XREF=gi:19424151 /GEN=Muc10 /FEA=FLmRNA /CNT=14 /TID=Rn.10113.1 /TIER=FL+Stack /STK=12 /UG=Rn.10113 /LL=65182 /DEF=Rattus norvegicus mucin 10, submandibular gland salivary mucin (Muc10), mRNA. /PROD=mucin 10, submandibular gland salivary mucin /FL=gb:NM_133513.1 gb:U03407.1 NM_133513 proline rich, lacrimal 1 Prol1 65182 NM_133513 0051930 // regulation of sensory perception of pain // not recorded 0005576 // extracellular region // not recorded /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation 0004866 // endopeptidase inhibitor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // not recorded 1387015_at NM_030873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030873.1 /DB_XREF=gi:13540706 /GEN=Pfn2 /FEA=FLmRNA /CNT=34 /TID=Rn.3515.1 /TIER=FL+Stack /STK=11 /UG=Rn.3515 /LL=81531 /DEF=Rattus norvegicus profilin II (Pfn2), mRNA. /PROD=profilin II /FL=gb:AF228736.1 gb:NM_030873.1 gb:AY004289.1 gb:AF228737.1 NM_030873 profilin 2 Pfn2 81531 NM_030873 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030833 // regulation of actin filament polymerization // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387016_a_at NM_019380 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019380.1 /DB_XREF=gi:9507072 /GEN=Sdfr1 /FEA=FLmRNA /CNT=30 /TID=Rn.37476.1 /TIER=FL+Stack /STK=11 /UG=Rn.37476 /LL=56064 /DEF=Rattus norvegicus stromal cell derived factor receptor 1 (Sdfr1), mRNA. /PROD=stromal cell derived factor receptor 1 /FL=gb:NM_019380.1 NM_019380 neuroplastin Nptn 56064 NM_019380 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007399 // nervous system development // inferred from electronic annotation /// 0010976 // positive regulation of neuron projection development // inferred from direct assay /// 0030155 // regulation of cell adhesion // traceable author statement /// 0045743 // positive regulation of fibroblast growth factor receptor signaling pathway // inferred from direct assay /// 0048170 // positive regulation of long-term neuronal synaptic plasticity // inferred from mutant phenotype /// 0060291 // long-term synaptic potentiation // inferred from direct assay 0000299 // integral to membrane of membrane fraction // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0045211 // postsynaptic membrane // traceable author statement 0005105 // type 1 fibroblast growth factor receptor binding // inferred from direct assay /// 0050839 // cell adhesion molecule binding // inferred from direct assay 1387017_at NM_017136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017136.1 /DB_XREF=gi:8394353 /GEN=Sqle /FEA=FLmRNA /CNT=26 /TID=Rn.33239.1 /TIER=FL+Stack /STK=11 /UG=Rn.33239 /LL=29230 /DEF=Rattus norvegicus squalene epoxidase (Sqle), mRNA. /PROD=squalene epoxidase /FL=gb:D37920.1 gb:NM_017136.1 NM_017136 squalene epoxidase Sqle 29230 NM_017136 0006725 // cellular aromatic compound metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from mutant phenotype /// 0010033 // response to organic substance // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004506 // squalene monooxygenase activity // inferred from direct assay /// 0004506 // squalene monooxygenase activity // not recorded /// 0004506 // squalene monooxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1387018_at NM_053770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053770.1 /DB_XREF=gi:16758605 /GEN=Argbp2 /FEA=FLmRNA /CNT=21 /TID=Rn.24612.1 /TIER=FL+Stack /STK=11 /UG=Rn.24612 /LL=114901 /DEF=Rattus norvegicus ArgAbl-interacting protein ArgBP2 (Argbp2), mRNA. /PROD=ArgAbl-interacting protein ArgBP2 /FL=gb:AF026505.1 gb:NM_053770.1 NM_053770 sorbin and SH3 domain containing 2 Sorbs2 114901 NM_053770 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1387019_at NM_080481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080481.1 /DB_XREF=gi:17978458 /GEN=Atp5k /FEA=FLmRNA /CNT=17 /TID=Rn.8069.1 /TIER=FL+Stack /STK=11 /UG=Rn.8069 /LL=140608 /DEF=Rattus norvegicus ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit e (Atp5k), mRNA. /PROD=ATP synthase, H+ transporting, mitochondrialF1F0 complex, subunit e /FL=gb:D13121.1 gb:NM_080481.1 NM_080481 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit E Atp5i 140608 NM_080481 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0046034 // ATP metabolic process // inferred from direct assay 0000276 // mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) // inferred from direct assay /// 0000276 // mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005753 // mitochondrial proton-transporting ATP synthase complex // not recorded /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded 1387020_at BG664123 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664123 /DB_XREF=gi:13886045 /DB_XREF=DRAAEA09 /CLONE=DRAAEA09 /FEA=FLmRNA /CNT=33 /TID=Rn.6150.1 /TIER=ConsEnd /STK=3 /UG=Rn.6150 /LL=25427 /UG_GENE=Cyp51 /UG_TITLE=Cytochrom P450 Lanosterol 14 alpha-demethylase /FL=gb:U17697.1 gb:NM_012941.1 BG664123 cytochrome P450, family 51 Cyp51 25427 NM_012941 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0033488 // cholesterol biosynthetic process via 24,25-dihydrolanosterol // inferred from direct assay /// 0045540 // regulation of cholesterol biosynthetic process // traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008398 // sterol 14-demethylase activity // inferred from direct assay /// 0008398 // sterol 14-demethylase activity // not recorded /// 0008398 // sterol 14-demethylase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387021_at NM_022548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022548.1 /DB_XREF=gi:11968145 /GEN=PAG608 /FEA=FLmRNA /CNT=24 /TID=Rn.2925.1 /TIER=FL+Stack /STK=11 /UG=Rn.2925 /LL=64394 /DEF=Rattus norvegicus p53-activated gene 608 (PAG608), mRNA. /PROD=p53-activated gene 608 /FL=gb:NM_022548.1 NM_022548 zinc finger, matrin type 3 Zmat3 64394 NM_022548 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from direct assay /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0040008 // regulation of growth // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387022_at NM_022407 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022407.2 /DB_XREF=gi:14192934 /GEN=Aldh1a1 /FEA=FLmRNA /CNT=16 /TID=Rn.6132.1 /TIER=FL+Stack /STK=11 /UG=Rn.6132 /LL=24188 /DEF=Rattus norvegicus Aldehyde dehydrogenase 1, subfamily A1 (Aldh1a1), mRNA. /PROD=Aldehyde dehydrogenase 1, subfamily A1 /FL=gb:NM_022407.2 gb:AF001898.1 gb:U79118.1 gb:AF001897.1 gb:L42009.1 gb:AF001896.1 NM_022407 aldehyde dehydrogenase 1 family, member A1 Aldh1a1 24188 NM_022407 0001822 // kidney development // inferred from expression pattern /// 0001889 // liver development // inferred from expression pattern /// 0002072 // optic cup morphogenesis involved in camera-type eye development // inferred from electronic annotation /// 0002072 // optic cup morphogenesis involved in camera-type eye development // not recorded /// 0006979 // response to oxidative stress // inferred from mutant phenotype /// 0007494 // midgut development // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042572 // retinol metabolic process // inferred from electronic annotation /// 0042572 // retinol metabolic process // not recorded /// 0042573 // retinoic acid metabolic process // not recorded /// 0042573 // retinoic acid metabolic process // inferred from electronic annotation /// 0042904 // 9-cis-retinoic acid biosynthetic process // inferred from electronic annotation /// 0042904 // 9-cis-retinoic acid biosynthetic process // not recorded /// 0042905 // 9-cis-retinoic acid metabolic process // inferred from direct assay /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0045471 // response to ethanol // inferred from direct assay /// 0048048 // embryonic eye morphogenesis // inferred from electronic annotation /// 0048048 // embryonic eye morphogenesis // not recorded /// 0051289 // protein homotetramerization // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060206 // estrous cycle phase // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0001758 // retinal dehydrogenase activity // inferred from direct assay /// 0001758 // retinal dehydrogenase activity // inferred from electronic annotation /// 0004028 // 3-chloroallyl aldehyde dehydrogenase activity // not recorded /// 0004028 // 3-chloroallyl aldehyde dehydrogenase activity // traceable author statement /// 0004028 // 3-chloroallyl aldehyde dehydrogenase activity // inferred from electronic annotation /// 0004029 // aldehyde dehydrogenase (NAD) activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0018479 // benzaldehyde dehydrogenase (NAD+) activity // inferred from direct assay /// 0042802 // identical protein binding // inferred from direct assay 1387023_at NM_031154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031154.1 /DB_XREF=gi:13592151 /GEN=Gstm3 /FEA=FLmRNA /CNT=15 /TID=Rn.6036.1 /TIER=FL+Stack /STK=11 /UG=Rn.6036 /LL=81869 /DEF=Rattus norvegicus glutathione S-transferase, mu type 3 (Yb3) (Gstm3), mRNA. /PROD=glutathione S-transferase, mu type 3 (Yb3) /FL=gb:J02744.1 gb:NM_031154.1 NM_031154 glutathione S-transferase, mu 7 Gstm7 81869 NM_031154 0008152 // metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004364 // glutathione transferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387024_at NM_053883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053883.1 /DB_XREF=gi:16758751 /GEN=Dusp6 /FEA=FLmRNA /CNT=16 /TID=Rn.4313.1 /TIER=FL+Stack /STK=11 /UG=Rn.4313 /LL=116663 /DEF=Rattus norvegicus dual specificity phosphatase 6 (Dusp6), mRNA. /PROD=dual specificity phosphatase 6 /FL=gb:NM_053883.1 gb:U42627.1 NM_053883 dual specificity phosphatase 6 Dusp6 116663 NM_053883 0000188 // inactivation of MAPK activity // inferred from electronic annotation /// 0000188 // inactivation of MAPK activity // not recorded /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // not recorded /// 0006470 // protein dephosphorylation // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from expression pattern /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0051409 // response to nitrosative stress // inferred from electronic annotation /// 0051409 // response to nitrosative stress // not recorded /// 0060420 // regulation of heart growth // inferred from electronic annotation /// 0060420 // regulation of heart growth // not recorded /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from direct assay /// 0070373 // negative regulation of ERK1 and ERK2 cascade // not recorded /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070848 // response to growth factor stimulus // inferred from expression pattern 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // not recorded /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from direct assay /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // not recorded 1387025_at NM_019234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019234.1 /DB_XREF=gi:11276090 /GEN=Dncic1 /FEA=FLmRNA /CNT=14 /TID=Rn.11273.1 /TIER=FL+Stack /STK=11 /UG=Rn.11273 /LL=29564 /DEF=Rattus norvegicus dynein, cytoplasmic, intermediate chain 1 (Dncic1), mRNA. /PROD=dynein, cytoplasmic, intermediate chain 1 /FL=gb:NM_019234.1 NM_019234 dynein cytoplasmic 1 intermediate chain 1 Dync1i1 29564 NM_019234 0006810 // transport // inferred from electronic annotation /// 0047496 // vesicle transport along microtubule // inferred from direct assay 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // not recorded /// 0000776 // kinetochore // inferred from sequence or structural similarity /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0000922 // spindle pole // not recorded /// 0000922 // spindle pole // inferred from sequence or structural similarity /// 0000922 // spindle pole // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005868 // cytoplasmic dynein complex // inferred from direct assay /// 0005868 // cytoplasmic dynein complex // inferred from sequence or structural similarity /// 0005874 // microtubule // inferred from electronic annotation /// 0030286 // dynein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from direct assay 1387026_at NM_031683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031683.1 /DB_XREF=gi:13928945 /GEN=Smc1l1 /FEA=FLmRNA /CNT=19 /TID=Rn.11763.1 /TIER=FL+Stack /STK=11 /UG=Rn.11763 /LL=63996 /DEF=Rattus norvegicus SMC (segregation of mitotic chromosomes 1)-like 1 (yeast) (Smc1l1), mRNA. /PROD=segregation of mitotic chromosomes b /FL=gb:NM_031683.1 NM_031683 structural maintenance of chromosomes 1A Smc1a 63996 NM_031683 0000075 // cell cycle checkpoint // not recorded /// 0000075 // cell cycle checkpoint // inferred from sequence or structural similarity /// 0000075 // cell cycle checkpoint // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007062 // sister chromatid cohesion // inferred from electronic annotation /// 0007062 // sister chromatid cohesion // not recorded /// 0007067 // mitosis // inferred from electronic annotation /// 0007126 // meiosis // inferred from direct assay /// 0007126 // meiosis // not recorded /// 0007126 // meiosis // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0009314 // response to radiation // not recorded /// 0009314 // response to radiation // inferred from sequence or structural similarity /// 0009314 // response to radiation // inferred from electronic annotation /// 0032876 // negative regulation of DNA endoreduplication // inferred from electronic annotation /// 0032876 // negative regulation of DNA endoreduplication // not recorded /// 0042770 // signal transduction in response to DNA damage // not recorded /// 0042770 // signal transduction in response to DNA damage // inferred from sequence or structural similarity /// 0042770 // signal transduction in response to DNA damage // inferred from electronic annotation /// 0051276 // chromosome organization // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000776 // kinetochore // not recorded /// 0000776 // kinetochore // inferred from sequence or structural similarity /// 0000776 // kinetochore // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1387027_a_at U72741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U72741.1 /DB_XREF=gi:2351552 /FEA=FLmRNA /CNT=1 /TID=Rn.10706.2 /TIER=FL /STK=1 /UG=Rn.10706 /LL=25476 /UG_GENE=Lgals9 /DEF=Rattus norvegicus 36 Kd beta-galactoside binding lectin mRNA, complete cds. /PROD=36 Kd beta-galactoside binding lectin /FL=gb:U72741.1 U72741 lectin, galactoside-binding, soluble, 9 Lgals9 25476 NM_012977 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004871 // signal transducer activity // not recorded /// 0005529 // sugar binding // inferred from electronic annotation 1387028_a_at M86708 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M86708.1 /DB_XREF=gi:203961 /FEA=FLmRNA /CNT=24 /TID=Rn.2113.2 /TIER=FL+Stack /STK=21 /UG=Rn.2113 /LL=25261 /UG_GENE=Id1 /DEF=Rattus norvegicus inhibitor of DNA binding mRNA, complete cds. /PROD=inhibitor of DNA binding /FL=gb:M86708.1 gb:D10862.1 M86708 inhibitor of DNA binding 1 Id1 25261 NM_012797 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001886 // endothelial cell morphogenesis // inferred from electronic annotation /// 0001886 // endothelial cell morphogenesis // not recorded /// 0006351 // transcription, DNA-dependent // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030509 // BMP signaling pathway // not recorded /// 0031648 // protein destabilization // inferred from electronic annotation /// 0031648 // protein destabilization // not recorded /// 0032963 // collagen metabolic process // inferred from electronic annotation /// 0032963 // collagen metabolic process // not recorded /// 0043408 // regulation of MAPKKK cascade // inferred from electronic annotation /// 0043408 // regulation of MAPKKK cascade // not recorded /// 0043433 // negative regulation of transcription factor activity // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045765 // regulation of angiogenesis // inferred from electronic annotation /// 0045765 // regulation of angiogenesis // not recorded /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0046677 // response to antibiotic // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded /// 0060425 // lung morphogenesis // inferred from electronic annotation /// 0060425 // lung morphogenesis // not recorded /// 0060426 // lung vasculature development // inferred from electronic annotation /// 0060426 // lung vasculature development // not recorded 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1387029_at NM_130409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130409.1 /DB_XREF=gi:18426829 /GEN=Cfh /FEA=FLmRNA /CNT=18 /TID=Rn.13111.1 /TIER=FL+Stack /STK=11 /UG=Rn.13111 /DEF=Rattus norvegicus complement component factor h (Cfh), mRNA. /PROD=complement component factor h /FL=gb:NM_130409.1 NM_130409 complement factor H Cfh 155012 NM_130409 0006956 // complement activation // inferred from expression pattern /// 0030449 // regulation of complement activation // inferred from direct assay /// 0030449 // regulation of complement activation // not recorded 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0001851 // complement component C3b binding // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0008201 // heparin binding // not recorded /// 0043499 // eukaryotic cell surface binding // not recorded 1387030_at NM_053924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053924.1 /DB_XREF=gi:16758935 /GEN=Abcc5 /FEA=FLmRNA /CNT=14 /TID=Rn.19957.1 /TIER=FL+Stack /STK=10 /UG=Rn.19957 /LL=116721 /DEF=Rattus norvegicus ATP-binding cassette, sub-family C (CFTRMRP), member 5 (Abcc5), mRNA. /PROD=ATP-binding cassette, sub-family C (CFTRMRP),member 5 /FL=gb:AB020209.1 gb:NM_053924.1 NM_053924 ATP-binding cassette, sub-family C (CFTR/MRP), member 5 Abcc5 116721 NM_053924 0006810 // transport // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0055085 // transmembrane transport // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 1387031_at U36482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U36482.1 /DB_XREF=gi:2317799 /FEA=FLmRNA /CNT=14 /TID=Rn.32904.1 /TIER=FL+Stack /STK=10 /UG=Rn.32904 /LL=117030 /UG_GENE=Erp29 /DEF=Rattus norvegicus endoplasmic reticulum protein ERp29 precursor, mRNA, complete cds. /PROD=endoplasmic reticulum protein ERp29 precursor /FL=gb:NM_053961.1 gb:U36482.1 U36482 endoplasmic reticulum protein 29 Erp29 117030 NM_053961 0006457 // protein folding // traceable author statement /// 0006886 // intracellular protein transport // traceable author statement /// 0006950 // response to stress // inferred from electronic annotation /// 0009306 // protein secretion // inferred from electronic annotation 0005783 // endoplasmic reticulum // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // traceable author statement /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 1387032_at NM_012829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012829.1 /DB_XREF=gi:6978612 /GEN=Cck /FEA=FLmRNA /CNT=14 /TID=Rn.9781.1 /TIER=FL+Stack /STK=10 /UG=Rn.9781 /LL=25298 /DEF=Rattus norvegicus Cholecystokinin (Cck), mRNA. /PROD=cholecystokinin /FL=gb:NM_012829.1 gb:M25942.1 NM_012829 cholecystokinin Cck 25298 NM_012829 0001662 // behavioral fear response // inferred from mutant phenotype /// 0001764 // neuron migration // not recorded /// 0001764 // neuron migration // inferred from sequence or structural similarity /// 0001764 // neuron migration // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // inferred from direct assay /// 0006915 // apoptosis // inferred from direct assay /// 0006919 // activation of caspase activity // inferred from direct assay /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from sequence or structural similarity /// 0007409 // axonogenesis // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0032099 // negative regulation of appetite // inferred from direct assay /// 0032461 // positive regulation of protein oligomerization // inferred from direct assay /// 0042755 // eating behavior // inferred from direct assay /// 0042755 // eating behavior // not recorded /// 0042755 // eating behavior // inferred from sequence or structural similarity /// 0042755 // eating behavior // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from direct assay /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0051901 // positive regulation of mitochondrial depolarization // inferred from direct assay /// 0051930 // regulation of sensory perception of pain // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // non-traceable author statement /// 0005615 // extracellular space // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from sequence or structural similarity /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043194 // initial segment // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043203 // axon hillock // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay 0005179 // hormone activity // inferred from direct assay /// 0005179 // hormone activity // inferred from electronic annotation /// 0005179 // hormone activity // non-traceable author statement /// 0005184 // neuropeptide hormone activity // inferred from direct assay /// 0005184 // neuropeptide hormone activity // not recorded /// 0005184 // neuropeptide hormone activity // inferred from sequence or structural similarity /// 0005184 // neuropeptide hormone activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387033_at NM_012682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012682.1 /DB_XREF=gi:6981691 /GEN=Ucp1 /FEA=FLmRNA /CNT=13 /TID=Rn.10281.1 /TIER=FL+Stack /STK=10 /UG=Rn.10281 /LL=24860 /DEF=Rattus norvegicus Uncoupling protein (Ucp1), mRNA. /PROD=uncoupling protein /FL=gb:M11814.1 gb:NM_012682.1 NM_012682 uncoupling protein 1 (mitochondrial, proton carrier) Ucp1 24860 NM_012682 0006091 // generation of precursor metabolites and energy // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006839 // mitochondrial transport // inferred from direct assay /// 0006839 // mitochondrial transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from direct assay /// 0015992 // proton transport // not recorded /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0044253 // positive regulation of multicellular organismal metabolic process // traceable author statement /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055085 // transmembrane transport // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005740 // mitochondrial envelope // inferred from electronic annotation /// 0005740 // mitochondrial envelope // not recorded /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017077 // oxidative phosphorylation uncoupler activity // inferred from direct assay /// 0017077 // oxidative phosphorylation uncoupler activity // not recorded /// 0017077 // oxidative phosphorylation uncoupler activity // inferred from electronic annotation 1387034_at NM_012619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012619.1 /DB_XREF=gi:6981329 /GEN=Pah /FEA=FLmRNA /CNT=16 /TID=Rn.1652.1 /TIER=FL+Stack /STK=10 /UG=Rn.1652 /LL=24616 /DEF=Rattus norvegicus Phenylalanine hydroxylase (Pah), mRNA. /PROD=phenylalanine hydroxylase /FL=gb:NM_012619.1 gb:M12337.1 NM_012619 phenylalanine hydroxylase Pah 24616 NM_012619 0006558 // L-phenylalanine metabolic process // inferred from direct assay /// 0006559 // L-phenylalanine catabolic process // inferred from electronic annotation /// 0006571 // tyrosine biosynthetic process // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009072 // aromatic amino acid family metabolic process // inferred from electronic annotation /// 0018126 // protein hydroxylation // inferred from direct assay /// 0042558 // pteridine and derivative metabolic process // inferred from direct assay /// 0046146 // tetrahydrobiopterin metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004505 // phenylalanine 4-monooxygenase activity // inferred from direct assay /// 0004505 // phenylalanine 4-monooxygenase activity // not recorded /// 0004505 // phenylalanine 4-monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from direct assay /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from direct assay /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016714 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from direct assay 1387035_a_at NM_022244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022244.1 /DB_XREF=gi:11560043 /GEN=LOC63994 /FEA=FLmRNA /CNT=14 /TID=Rn.64581.1 /TIER=FL+Stack /STK=10 /UG=Rn.64581 /LL=63994 /DEF=Rattus norvegicus nadrin (LOC63994), mRNA. /PROD=nadrin /FL=gb:NM_022244.1 gb:AB080637.1 gb:AB042827.1 NM_022244 Rho GTPase activating protein 17 Arhgap17 63994 NM_022244 0007015 // actin filament organization // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0017156 // calcium ion-dependent exocytosis // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005626 // insoluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation 1387036_at NM_024360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024360.1 /DB_XREF=gi:13242250 /GEN=Hes1 /FEA=FLmRNA /CNT=14 /TID=Rn.19727.1 /TIER=FL+Stack /STK=10 /UG=Rn.19727 /LL=29577 /DEF=Rattus norvegicus hairy and enhancer of split 1, (Drosophila) (Hes1), mRNA. /PROD=hairy and enhancer of split 1, (Drosophila) /FL=gb:NM_024360.1 gb:L04527.1 NM_024360 hairy and enhancer of split 1 (Drosophila) Hes1 29577 NM_024360 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0001889 // liver development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0007219 // Notch signaling pathway // not recorded /// 0007224 // smoothened signaling pathway // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0021555 // midbrain-hindbrain boundary morphogenesis // not recorded /// 0021557 // oculomotor nerve development // not recorded /// 0021558 // trochlear nerve development // not recorded /// 0021575 // hindbrain morphogenesis // not recorded /// 0021915 // neural tube development // not recorded /// 0021983 // pituitary gland development // not recorded /// 0030324 // lung development // not recorded /// 0030901 // midbrain development // not recorded /// 0042491 // auditory receptor cell differentiation // not recorded /// 0042668 // auditory receptor cell fate determination // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045608 // negative regulation of auditory receptor cell differentiation // not recorded /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048469 // cell maturation // not recorded /// 0048505 // regulation of timing of cell differentiation // not recorded /// 0048667 // cell morphogenesis involved in neuron differentiation // not recorded /// 0050767 // regulation of neurogenesis // not recorded /// 0060164 // regulation of timing of neuron differentiation // not recorded /// 0061106 // negative regulation of stomach neuroendocrine cell differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0043234 // protein complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0016564 // transcription repressor activity // inferred from direct assay /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // traceable author statement /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043398 // HLH domain binding // not recorded 1387037_at AF022247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF022247.1 /DB_XREF=gi:3834379 /GEN=CUBILIN /FEA=FLmRNA /CNT=13 /TID=Rn.3236.1 /TIER=FL+Stack /STK=10 /UG=Rn.3236 /LL=80848 /DEF=Rattus norvegicus intrinsic factor-B12 receptor precursor (CUBILIN) mRNA, complete cds. /PROD=intrinsic factor-B12 receptor precursor /FL=gb:NM_053332.1 gb:AF022247.1 AF022247 cubilin (intrinsic factor-cobalamin receptor) Cubn 80848 NM_053332 0001701 // in utero embryonic development // inferred from direct assay /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006766 // vitamin metabolic process // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from direct assay /// 0006898 // receptor-mediated endocytosis // not recorded /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from mutant phenotype /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0020028 // hemoglobin import // inferred from mutant phenotype /// 0042953 // lipoprotein transport // inferred from electronic annotation /// 0042953 // lipoprotein transport // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // not recorded /// 0005903 // brush border // not recorded /// 0005903 // brush border // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0005905 // coated pit // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0030139 // endocytic vesicle // not recorded /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // inferred from direct assay /// 0031526 // brush border membrane // inferred from direct assay /// 0043202 // lysosomal lumen // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0045177 // apical part of cell // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation 0004872 // receptor activity // inferred from direct assay /// 0004872 // receptor activity // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030492 // hemoglobin binding // inferred from direct assay /// 0031419 // cobalamin binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1387038_at NM_053425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053425.1 /DB_XREF=gi:16758083 /GEN=Ccs /FEA=FLmRNA /CNT=13 /TID=Rn.12311.1 /TIER=FL+Stack /STK=10 /UG=Rn.12311 /LL=84485 /DEF=Rattus norvegicus copper chaperone for superoxide dismutase (Ccs), mRNA. /PROD=copper chaperone for superoxide dismutase /FL=gb:AF255305.1 gb:NM_053425.1 NM_053425 copper chaperone for superoxide dismutase Ccs 84485 NM_053425 0006801 // superoxide metabolic process // inferred from electronic annotation /// 0030001 // metal ion transport // inferred from electronic annotation /// 0051353 // positive regulation of oxidoreductase activity // inferred from electronic annotation /// 0051353 // positive regulation of oxidoreductase activity // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004784 // superoxide dismutase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016532 // superoxide dismutase copper chaperone activity // traceable author statement /// 0019899 // enzyme binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1387039_at NM_030828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030828.1 /DB_XREF=gi:13540621 /GEN=Gpc1 /FEA=FLmRNA /CNT=22 /TID=Rn.7044.1 /TIER=FL+Stack /STK=10 /UG=Rn.7044 /LL=58920 /DEF=Rattus norvegicus glypican 1 (Gpc1), mRNA. /PROD=glypican 1 /FL=gb:NM_030828.1 gb:L02896.1 gb:L34067.1 NM_030828 glypican 1 Gpc1 58920 NM_030828 0007155 // cell adhesion // non-traceable author statement /// 0007267 // cell-cell signaling // non-traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0043395 // heparan sulfate proteoglycan binding // inferred from electronic annotation 1387040_at NM_012798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012798.1 /DB_XREF=gi:6981177 /GEN=Mal /FEA=FLmRNA /CNT=18 /TID=Rn.10174.1 /TIER=FL+Stack /STK=10 /UG=Rn.10174 /LL=25263 /DEF=Rattus norvegicus MAL protein gene (Mal), mRNA. /PROD=MAL protein gene /FL=gb:U31367.1 gb:NM_012798.1 NM_012798 mal, T-cell differentiation protein Mal 25263 NM_012798 0006886 // intracellular protein transport // traceable author statement /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0042552 // myelination // inferred from direct assay 0000300 // peripheral to membrane of membrane fraction // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from electronic annotation 0019911 // structural constituent of myelin sheath // inferred from direct assay /// 0019911 // structural constituent of myelin sheath // not recorded /// 0019911 // structural constituent of myelin sheath // inferred from electronic annotation 1387041_at NM_053747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053747.1 /DB_XREF=gi:16758575 /GEN=Ubqln1 /FEA=FLmRNA /CNT=13 /TID=Rn.2830.1 /TIER=FL+Stack /STK=10 /UG=Rn.2830 /LL=114590 /DEF=Rattus norvegicus ubiquilin 1 (Ubqln1), mRNA. /PROD=ubiquilin 1 /FL=gb:NM_053747.1 gb:D87950.1 NM_053747 ubiquilin 1 Ubqln1 114590 NM_053747 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from sequence or structural similarity /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from sequence or structural similarity /// 0006915 // apoptosis // inferred from electronic annotation /// 0031396 // regulation of protein ubiquitination // not recorded /// 0031396 // regulation of protein ubiquitination // inferred from sequence or structural similarity /// 0031396 // regulation of protein ubiquitination // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019900 // kinase binding // inferred from electronic annotation /// 0019900 // kinase binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction 1387042_at NM_012828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012828.1 /DB_XREF=gi:6978582 /GEN=Cacnb3 /FEA=FLmRNA /CNT=12 /TID=Rn.2808.1 /TIER=FL+Stack /STK=10 /UG=Rn.2808 /LL=25297 /DEF=Rattus norvegicus Calcium channel subunit beta 3 (Cacnb3), mRNA. /PROD=calcium channel subunit beta 3 /FL=gb:NM_012828.1 gb:M88751.1 NM_012828 calcium channel, voltage-dependent, beta 3 subunit Cacnb3 25297 NM_012828 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006816 // calcium ion transport // traceable author statement /// 0050852 // T cell receptor signaling pathway // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // not recorded 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005891 // voltage-gated calcium channel complex // inferred from direct assay /// 0005891 // voltage-gated calcium channel complex // not recorded /// 0005891 // voltage-gated calcium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016324 // apical plasma membrane // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from mutant phenotype /// 0005245 // voltage-gated calcium channel activity // not recorded /// 0005245 // voltage-gated calcium channel activity // traceable author statement /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1387043_at NM_021759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021759.1 /DB_XREF=gi:11527395 /GEN=C4.4a /FEA=FLmRNA /CNT=12 /TID=Rn.38434.1 /TIER=FL+Stack /STK=10 /UG=Rn.38434 /LL=60378 /DEF=Rattus norvegicus GPI-anchored metastasis-associated protein homolog (C4.4a), mRNA. /PROD=GPI-anchored metastasis-associated proteinhomolog /FL=gb:NM_021759.1 NM_021759 Ly6/Plaur domain containing 3 Lypd3 60378 NM_021759 0006928 // cellular component movement // inferred from direct assay /// 0007160 // cell-matrix adhesion // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0031225 // anchored to membrane // inferred from electronic annotation 0043236 // laminin binding // inferred from direct assay 1387044_at AF260741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF260741.1 /DB_XREF=gi:14009509 /GEN=Zsig51 /FEA=FLmRNA /CNT=11 /TID=Rn.22078.1 /TIER=FL+Stack /STK=10 /UG=Rn.22078 /LL=171158 /DEF=Rattus norvegicus cysteine knot protein (Zsig51) mRNA, complete cds. /PROD=cysteine knot protein /FL=gb:NM_133619.1 gb:AF260741.1 AF260741 glycoprotein hormone alpha 2 Gpha2 171158 NM_133619 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded 0005179 // hormone activity // inferred from electronic annotation 1387045_at NM_031604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031604.1 /DB_XREF=gi:13928825 /GEN=Atp6n1 /FEA=FLmRNA /CNT=15 /TID=Rn.6015.1 /TIER=FL+Stack /STK=10 /UG=Rn.6015 /LL=29757 /DEF=Rattus norvegicus ATPase, H+ transporting, lysosomal (vacuolar proton pump) noncatalytic accessory protein 1 (110160 kDa) (Atp6n1), mRNA. /PROD=ATPase, H+ transporting, lysosomal (vacuolarproton pump) noncatalytic accessory protein 1 (110160kDa) /FL=gb:M58758.1 gb:NM_031604.1 NM_031604 ATPase, H+ transporting, lysosomal V0 subunit A1 Atp6v0a1 29757 NM_031604 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0033177 // proton-transporting two-sector ATPase complex, proton-transporting domain // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0051117 // ATPase binding // not recorded 1387046_at NM_053792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053792.1 /DB_XREF=gi:16758621 /GEN=Slb /FEA=FLmRNA /CNT=11 /TID=Rn.20634.1 /TIER=FL+Stack /STK=10 /UG=Rn.20634 /LL=116475 /DEF=Rattus norvegicus selective LIM binding factor, rat homolog (Slb), mRNA. /PROD=selective LIM binding factor, rat homolog /FL=gb:AF226993.1 gb:NM_053792.1 NM_053792 intraflagellar transport 172 homolog (Chlamydomonas) Ift172 116475 NM_053792 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001841 // neural tube formation // not recorded /// 0007224 // smoothened signaling pathway // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // not recorded /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0016485 // protein processing // not recorded /// 0042384 // cilium assembly // not recorded /// 0042384 // cilium assembly // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005929 // cilium // not recorded /// 0005929 // cilium // inferred from sequence or structural similarity /// 0005929 // cilium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded 1387047_at NM_031750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031750.1 /DB_XREF=gi:13929051 /GEN=Hspb3 /FEA=FLmRNA /CNT=11 /TID=Rn.20155.1 /TIER=FL+Stack /STK=10 /UG=Rn.20155 /LL=78951 /DEF=Rattus norvegicus heat shock 27kD protein 3 (Hspb3), mRNA. /PROD=heat shock 27kD protein 3 /FL=gb:NM_031750.1 gb:AF203374.1 NM_031750 heat shock protein 3 Hspb3 78951 NM_031750 0006950 // response to stress // inferred from electronic annotation /// 0009408 // response to heat // inferred from electronic annotation 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 1387048_at NM_053563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053563.1 /DB_XREF=gi:16758333 /GEN=Ddxl /FEA=FLmRNA /CNT=10 /TID=Rn.14550.1 /TIER=FL+Stack /STK=10 /UG=Rn.14550 /LL=89827 /DEF=Rattus norvegicus nuclear RNA helicase, DECD variant of DEAD box family (Ddxl), mRNA. /PROD=nuclear RNA helicase, DECD variant of DEAD boxfamily /FL=gb:NM_053563.1 gb:AF063447.1 NM_053563 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 Ddx39 89827 NM_053563 0000398 // nuclear mRNA splicing, via spliceosome // inferred from electronic annotation /// 0000398 // nuclear mRNA splicing, via spliceosome // not recorded /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // not recorded /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387049_at BI296041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296041 /DB_XREF=gi:14960086 /DB_XREF=UI-R-DK0-cfd-f-09-0-UI.s1 /CLONE=UI-R-DK0-cfd-f-09-0-UI /FEA=FLmRNA /CNT=77 /TID=Rn.54399.1 /TIER=Stack /STK=14 /UG=Rn.54399 /LL=29556 /UG_GENE=Myh6 /UG_TITLE=myosin heavy chain, cardiac muscle, adult /FL=gb:NM_017239.1 BI296041 myosin, heavy chain 6, cardiac muscle, alpha Myh6 29556 NM_017239 0000302 // response to reactive oxygen species // inferred from expression pattern /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002026 // regulation of the force of heart contraction // not recorded /// 0002027 // regulation of heart rate // inferred from electronic annotation /// 0002027 // regulation of heart rate // not recorded /// 0006200 // ATP catabolic process // inferred from mutant phenotype /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006936 // muscle contraction // inferred from mutant phenotype /// 0006936 // muscle contraction // not recorded /// 0006936 // muscle contraction // inferred from electronic annotation /// 0006941 // striated muscle contraction // inferred from electronic annotation /// 0006941 // striated muscle contraction // not recorded /// 0007512 // adult heart development // inferred from electronic annotation /// 0007512 // adult heart development // not recorded /// 0007522 // visceral muscle development // inferred from electronic annotation /// 0007522 // visceral muscle development // not recorded /// 0008016 // regulation of heart contraction // not recorded /// 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008217 // regulation of blood pressure // not recorded /// 0030048 // actin filament-based movement // inferred from electronic annotation /// 0030048 // actin filament-based movement // not recorded /// 0030049 // muscle filament sliding // inferred from electronic annotation /// 0030049 // muscle filament sliding // not recorded /// 0030239 // myofibril assembly // not recorded /// 0030239 // myofibril assembly // inferred from electronic annotation /// 0043462 // regulation of ATPase activity // inferred from electronic annotation /// 0043462 // regulation of ATPase activity // not recorded /// 0045214 // sarcomere organization // inferred from electronic annotation /// 0045214 // sarcomere organization // not recorded /// 0048739 // cardiac muscle fiber development // inferred from electronic annotation /// 0048739 // cardiac muscle fiber development // not recorded /// 0055009 // atrial cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055009 // atrial cardiac muscle tissue morphogenesis // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005859 // muscle myosin complex // inferred from direct assay /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0016459 // myosin complex // not recorded /// 0016459 // myosin complex // inferred from electronic annotation /// 0030016 // myofibril // inferred from direct assay /// 0030016 // myofibril // not recorded /// 0030016 // myofibril // inferred from electronic annotation /// 0032982 // myosin filament // inferred from electronic annotation /// 0043292 // contractile fiber // inferred from mutant phenotype /// 0048471 // perinuclear region of cytoplasm // inferred from mutant phenotype 0000146 // microfilament motor activity // inferred from mutant phenotype /// 0000146 // microfilament motor activity // not recorded /// 0000146 // microfilament motor activity // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from electronic annotation /// 0008307 // structural constituent of muscle // inferred from electronic annotation /// 0008307 // structural constituent of muscle // not recorded /// 0016887 // ATPase activity // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from mutant phenotype /// 0030898 // actin-dependent ATPase activity // inferred from electronic annotation /// 0030898 // actin-dependent ATPase activity // not recorded /// 0030899 // calcium-dependent ATPase activity // inferred from mutant phenotype /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0051015 // actin filament binding // inferred from electronic annotation 1387050_s_at NM_012696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012696.1 /DB_XREF=gi:6981137 /GEN=Kng /FEA=FLmRNA /CNT=20 /TID=Rn.54394.1 /TIER=FL+Stack /STK=9 /UG=Rn.54394 /LL=24903 /DEF=Rattus norvegicus T-kininogen, see also D11Elh1 and D11Mit8 (Kng), mRNA. /PROD=T-kininogen, see also D11Elh1 and D11Mit8 /FL=gb:NM_012696.1 gb:M11883.1 gb:K02814.1 NM_012696 kininogen 1 /// kininogen 1-like 1 /// kininogen 2 Kng1 /// Kng1l1 /// Kng2 24903 /// 25087 /// 288001 NM_001009628 /// NM_001102418 /// NM_012696 /// NM_012741 0001938 // positive regulation of endothelial cell proliferation // inferred from direct assay /// 0006953 // acute-phase response // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007162 // negative regulation of cell adhesion // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007596 // blood coagulation // inferred from electronic annotation /// 0030195 // negative regulation of blood coagulation // not recorded /// 0042130 // negative regulation of T cell proliferation // inferred from direct assay /// 0042311 // vasodilation // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // inferred from direct assay /// 0043410 // positive regulation of MAPKKK cascade // inferred from direct assay /// 0045861 // negative regulation of proteolysis // inferred from direct assay /// 0048146 // positive regulation of fibroblast proliferation // inferred from direct assay /// 0050672 // negative regulation of lymphocyte proliferation // inferred from direct assay /// 0050880 // regulation of blood vessel size // inferred from electronic annotation /// 0052548 // regulation of endopeptidase activity // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from direct assay /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1387051_at NM_053436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053436.1 /DB_XREF=gi:16758177 /GEN=Stau /FEA=FLmRNA /CNT=19 /TID=Rn.9028.1 /TIER=FL+Stack /STK=9 /UG=Rn.9028 /LL=84496 /DEF=Rattus norvegicus staufen (Drosophila, RNA-binding protein) (Stau), mRNA. /PROD=staufen (Drosophila, RNA-binding protein) /FL=gb:AF227200.1 gb:AF290989.1 gb:NM_053436.1 NM_053436 staufen RNA binding protein homolog 1 (Drosophila) Stau1 84496 NM_001109907 /// NM_053436 0008298 // intracellular mRNA localization // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from direct assay /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008157 // protein phosphatase 1 binding // inferred from physical interaction 1387052_at NM_031039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031039.1 /DB_XREF=gi:13591960 /GEN=Gpt /FEA=FLmRNA /CNT=17 /TID=Rn.6318.1 /TIER=FL+Stack /STK=9 /UG=Rn.6318 /LL=81670 /DEF=Rattus norvegicus glutamic-pyruvate transaminase (alanine aminotransferase) (Gpt), mRNA. /PROD=glutamic-pyruvate transaminase (alanineaminotransferase) /FL=gb:NM_031039.1 NM_031039 glutamic-pyruvate transaminase (alanine aminotransferase) Gpt 81670 NM_031039 0009058 // biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004021 // L-alanine:2-oxoglutarate aminotransferase activity // non-traceable author statement /// 0004021 // L-alanine:2-oxoglutarate aminotransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // non-traceable author statement /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1387053_at NM_012792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012792.1 /DB_XREF=gi:6978846 /GEN=Fmo1 /FEA=FLmRNA /CNT=14 /TID=Rn.867.1 /TIER=FL+Stack /STK=9 /UG=Rn.867 /LL=25256 /DEF=Rattus norvegicus Flavin-containing monooxygenase 1 (Fmo1), mRNA. /PROD=flavin-containing monooxygenase 1 /FL=gb:NM_012792.1 gb:M84719.1 NM_012792 flavin containing monooxygenase 1 Fmo1 25256 NM_012792 0006082 // organic acid metabolic process // inferred from electronic annotation /// 0006082 // organic acid metabolic process // not recorded /// 0006970 // response to osmotic stress // inferred from expression pattern /// 0009404 // toxin metabolic process // inferred from electronic annotation /// 0009404 // toxin metabolic process // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0070995 // NADPH oxidation // inferred from electronic annotation /// 0070995 // NADPH oxidation // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031227 // intrinsic to endoplasmic reticulum membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from direct assay /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004499 // flavin-containing monooxygenase activity // inferred from direct assay /// 0004499 // flavin-containing monooxygenase activity // not recorded /// 0004499 // flavin-containing monooxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from electronic annotation 1387054_at AI712719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712719 /DB_XREF=gi:5016519 /DB_XREF=UI-R-AF1-aau-f-11-0-UI.s1 /CLONE=UI-R-AF1-aau-f-11-0-UI /FEA=FLmRNA /CNT=30 /TID=Rn.8398.1 /TIER=Stack /STK=7 /UG=Rn.8398 /LL=85264 /UG_GENE=Abcg1 /UG_TITLE=ATP-binding cassette, sub-family G (WHITE), member 1 /FL=gb:NM_053502.1 AI712719 ATP-binding cassette, sub-family G (WHITE), member 1 Abcg1 85264 NM_053502 0006810 // transport // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0010033 // response to organic substance // not recorded /// 0010872 // regulation of cholesterol esterification // inferred from electronic annotation /// 0010872 // regulation of cholesterol esterification // not recorded /// 0010875 // positive regulation of cholesterol efflux // inferred from electronic annotation /// 0010875 // positive regulation of cholesterol efflux // not recorded /// 0010888 // negative regulation of lipid storage // inferred from electronic annotation /// 0010888 // negative regulation of lipid storage // not recorded /// 0030301 // cholesterol transport // not recorded /// 0030301 // cholesterol transport // traceable author statement /// 0030301 // cholesterol transport // inferred from electronic annotation /// 0032367 // intracellular cholesterol transport // not recorded /// 0033344 // cholesterol efflux // not recorded /// 0033344 // cholesterol efflux // inferred from electronic annotation /// 0033700 // phospholipid efflux // not recorded /// 0033993 // response to lipid // not recorded /// 0034374 // low-density lipoprotein particle remodeling // inferred from electronic annotation /// 0034374 // low-density lipoprotein particle remodeling // not recorded /// 0034375 // high-density lipoprotein particle remodeling // inferred from electronic annotation /// 0034375 // high-density lipoprotein particle remodeling // not recorded /// 0034436 // glycoprotein transport // not recorded /// 0042632 // cholesterol homeostasis // not recorded /// 0042987 // amyloid precursor protein catabolic process // not recorded /// 0043691 // reverse cholesterol transport // inferred from electronic annotation /// 0043691 // reverse cholesterol transport // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045542 // positive regulation of cholesterol biosynthetic process // inferred from electronic annotation /// 0045542 // positive regulation of cholesterol biosynthetic process // not recorded /// 0055091 // phospholipid homeostasis // not recorded /// 0055099 // response to high density lipoprotein stimulus // inferred from electronic annotation /// 0055099 // response to high density lipoprotein stimulus // not recorded 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from electronic annotation /// 0055037 // recycling endosome // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005548 // phospholipid transporter activity // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0017127 // cholesterol transporter activity // not recorded /// 0019534 // toxin transporter activity // not recorded /// 0034041 // sterol-transporting ATPase activity // not recorded /// 0034437 // glycoprotein transporter activity // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043531 // ADP binding // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1387055_at U90829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U90829.1 /DB_XREF=gi:4099877 /FEA=FLmRNA /CNT=23 /TID=Rn.4279.1 /TIER=FL+Stack /STK=9 /UG=Rn.4279 /LL=84019 /UG_GENE=Appbp1 /DEF=Rattus norvegicus APP-binding protein 1 mRNA, complete cds. /PROD=APP-binding protein 1 /FL=gb:U90829.1 gb:NM_032072.1 U90829 NEDD8 activating enzyme E1 subunit 1 Nae1 84019 NM_032072 0006260 // DNA replication // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0031574 // S-M checkpoint // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0045116 // protein neddylation // not recorded 0005626 // insoluble fraction // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019781 // NEDD8 activating enzyme activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1387056_at NM_024405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024405.1 /DB_XREF=gi:13242325 /GEN=Axin /FEA=FLmRNA /CNT=15 /TID=Rn.31781.1 /TIER=FL+Stack /STK=9 /UG=Rn.31781 /LL=79257 /DEF=Rattus norvegicus GSK-3beta interacting protein rAxin (Axin), mRNA. /PROD=GSK-3beta interacting protein rAxin /FL=gb:NM_024405.1 gb:AF017756.1 NM_024405 axin 1 Axin1 79257 NM_024405 0001934 // positive regulation of protein phosphorylation // not recorded /// 0006913 // nucleocytoplasmic transport // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0007628 // adult walking behavior // not recorded /// 0009950 // dorsal/ventral axis specification // not recorded /// 0010800 // positive regulation of peptidyl-threonine phosphorylation // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from direct assay /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0020027 // hemoglobin metabolic process // not recorded /// 0030163 // protein catabolic process // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // traceable author statement /// 0031398 // positive regulation of protein ubiquitination // inferred from direct assay /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0032147 // activation of protein kinase activity // not recorded /// 0033138 // positive regulation of peptidyl-serine phosphorylation // not recorded /// 0034101 // erythrocyte homeostasis // not recorded /// 0035121 // tail morphogenesis // not recorded /// 0035412 // regulation of catenin protein nuclear translocation // not recorded /// 0043507 // positive regulation of JUN kinase activity // not recorded /// 0043623 // cellular protein complex assembly // not recorded /// 0045599 // negative regulation of fat cell differentiation // not recorded /// 0045732 // positive regulation of protein catabolic process // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from direct assay /// 0045941 // positive regulation of transcription // not recorded /// 0046330 // positive regulation of JNK cascade // not recorded /// 0046330 // positive regulation of JNK cascade // inferred from sequence or structural similarity /// 0048318 // axial mesoderm development // not recorded /// 0048320 // axial mesoderm formation // not recorded /// 0050877 // neurological system process // not recorded /// 0051248 // negative regulation of protein metabolic process // not recorded /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051260 // protein homooligomerization // not recorded /// 0051443 // positive regulation of ubiquitin-protein ligase activity // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // traceable author statement /// 0060272 // embryonic skeletal joint morphogenesis // not recorded /// 0071514 // genetic imprinting // not recorded /// 0090041 // negative regulation of gene-specific transcription elongation from RNA polymerase II promoter // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005938 // cell cortex // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0016328 // lateral plasma membrane // not recorded /// 0030877 // beta-catenin destruction complex // inferred from direct assay /// 0030877 // beta-catenin destruction complex // not recorded /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0034747 // Axin-APC-beta-catenin-GSK3B complex // inferred from direct assay /// 0034747 // Axin-APC-beta-catenin-GSK3B complex // not recorded /// 0044459 // plasma membrane part // not recorded /// 0048222 // glycoprotein network // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008013 // beta-catenin binding // inferred from direct assay /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0008013 // beta-catenin binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019901 // protein kinase binding // not recorded /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0032947 // protein complex scaffold // not recorded /// 0042802 // identical protein binding // inferred from direct assay /// 0042802 // identical protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0046332 // SMAD binding // not recorded /// 0070016 // armadillo repeat domain binding // inferred from direct assay /// 0070411 // I-SMAD binding // not recorded 1387057_at NM_053442 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053442.1 /DB_XREF=gi:16758187 /GEN=Slc7a8 /FEA=FLmRNA /CNT=15 /TID=Rn.9908.1 /TIER=FL+Stack /STK=9 /UG=Rn.9908 /LL=84551 /DEF=Rattus norvegicus solute carrier family 7 (cationic amino acid transporter, y+ system), member 8 (Slc7a8), mRNA. /PROD=solute carrier family 7 (cationic amino acidtransporter, y+ system), member 8 /FL=gb:AB024400.1 gb:NM_053442.1 gb:AB016962.1 NM_053442 solute carrier family 7 (cationic amino acid transporter, y+ system), member 8 Slc7a8 84551 NM_053442 0003333 // amino acid transmembrane transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded /// 0006865 // amino acid transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0015804 // neutral amino acid transport // inferred from sequence or structural similarity /// 0015807 // L-amino acid transport // not recorded /// 0015807 // L-amino acid transport // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015101 // organic cation transmembrane transporter activity // inferred from electronic annotation /// 0015101 // organic cation transmembrane transporter activity // not recorded /// 0015171 // amino acid transmembrane transporter activity // not recorded /// 0015171 // amino acid transmembrane transporter activity // inferred from sequence or structural similarity /// 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015179 // L-amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015179 // L-amino acid transmembrane transporter activity // not recorded /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0019534 // toxin transporter activity // inferred from electronic annotation /// 0019534 // toxin transporter activity // not recorded /// 0042605 // peptide antigen binding // inferred from sequence or structural similarity 1387058_at NM_017225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017225.1 /DB_XREF=gi:8393921 /GEN=Pctp /FEA=FLmRNA /CNT=12 /TID=Rn.9487.1 /TIER=FL+Stack /STK=9 /UG=Rn.9487 /LL=29510 /DEF=Rattus norvegicus phosphatidylcholine transfer protein (Pctp), mRNA. /PROD=phosphatidylcholine transfer protein /FL=gb:NM_017225.1 NM_017225 phosphatidylcholine transfer protein Pctp 29510 NM_017225 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0015914 // phospholipid transport // not recorded /// 0015914 // phospholipid transport // inferred from sequence or structural similarity /// 0015914 // phospholipid transport // traceable author statement /// 0015914 // phospholipid transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0008289 // lipid binding // inferred from electronic annotation /// 0008525 // phosphatidylcholine transmembrane transporter activity // not recorded /// 0008525 // phosphatidylcholine transmembrane transporter activity // inferred from sequence or structural similarity /// 0008525 // phosphatidylcholine transmembrane transporter activity // traceable author statement /// 0031210 // phosphatidylcholine binding // not recorded /// 0031210 // phosphatidylcholine binding // inferred from sequence or structural similarity /// 0031210 // phosphatidylcholine binding // inferred from electronic annotation 1387059_at NM_019362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019362.1 /DB_XREF=gi:9507132 /GEN=Stk39 /FEA=FLmRNA /CNT=29 /TID=Rn.15731.1 /TIER=FL+Stack /STK=9 /UG=Rn.15731 /LL=54348 /DEF=Rattus norvegicus serine threonine kinase 39 (STE20SPS1 homolog, yeast) (Stk39), mRNA. /PROD=Ste-20 related kinase /FL=gb:D88190.1 gb:AF099990.1 gb:NM_019362.1 NM_019362 serine/threonine kinase 39, STE20/SPS1 homolog (yeast) Stk39 54348 NM_019362 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0043268 // positive regulation of potassium ion transport // inferred from mutant phenotype 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from direct assay /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387060_at NM_031642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031642.1 /DB_XREF=gi:13928883 /GEN=Copeb /FEA=FLmRNA /CNT=15 /TID=Rn.11252.1 /TIER=FL+Stack /STK=9 /UG=Rn.11252 /LL=58954 /DEF=Rattus norvegicus core promoter element binding protein (Copeb), mRNA. /PROD=core promoter element binding protein /FL=gb:AF001417.1 gb:NM_031642.1 NM_031642 Kruppel-like factor 6 Klf6 58954 NM_031642 0006350 // transcription // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0042060 // wound healing // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387061_at NM_031047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031047.1 /DB_XREF=gi:13591976 /GEN=Jup /FEA=FLmRNA /CNT=11 /TID=Rn.11255.1 /TIER=FL+Stack /STK=9 /UG=Rn.11255 /LL=81679 /DEF=Rattus norvegicus unction plakoglobin (Jup), mRNA. /PROD=unction plakoglobin /FL=gb:U58858.1 gb:NM_031047.1 NM_031047 junction plakoglobin Jup 81679 NM_031047 0002159 // desmosome assembly // inferred from electronic annotation /// 0002159 // desmosome assembly // not recorded /// 0007155 // cell adhesion // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // inferred from direct assay /// 0016337 // cell-cell adhesion // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0042307 // positive regulation of protein import into nucleus // inferred from electronic annotation /// 0042307 // positive regulation of protein import into nucleus // not recorded /// 0043588 // skin development // inferred from electronic annotation /// 0043588 // skin development // not recorded /// 0050982 // detection of mechanical stimulus // inferred from electronic annotation /// 0050982 // detection of mechanical stimulus // not recorded /// 0051091 // positive regulation of transcription factor activity // inferred from electronic annotation /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0051291 // protein heterooligomerization // inferred from physical interaction /// 0071681 // cellular response to indole-3-methanol // inferred from electronic annotation /// 0071681 // cellular response to indole-3-methanol // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // inferred from direct assay /// 0005911 // cell-cell junction // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005912 // adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0005913 // cell-cell adherens junction // not recorded /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005916 // fascia adherens // inferred from direct assay /// 0009898 // internal side of plasma membrane // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016327 // apicolateral plasma membrane // inferred from direct assay /// 0016328 // lateral plasma membrane // inferred from direct assay /// 0016342 // catenin complex // inferred from electronic annotation /// 0016342 // catenin complex // not recorded /// 0030018 // Z disc // inferred from electronic annotation /// 0030018 // Z disc // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030057 // desmosome // inferred from direct assay /// 0030057 // desmosome // not recorded /// 0030057 // desmosome // inferred from electronic annotation /// 0032993 // protein-DNA complex // inferred from electronic annotation /// 0032993 // protein-DNA complex // not recorded /// 0071664 // catenin-TCF7L2 complex // inferred from electronic annotation /// 0071664 // catenin-TCF7L2 complex // not recorded 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0005198 // structural molecule activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // not recorded /// 0042153 // RPTP-like protein binding // inferred from electronic annotation /// 0042153 // RPTP-like protein binding // not recorded /// 0045294 // alpha-catenin binding // inferred from electronic annotation /// 0045294 // alpha-catenin binding // not recorded /// 0045296 // cadherin binding // inferred from electronic annotation /// 0045296 // cadherin binding // not recorded 1387062_a_at NM_080400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080400.1 /DB_XREF=gi:17939353 /GEN=Chek1 /FEA=FLmRNA /CNT=11 /TID=Rn.33267.1 /TIER=FL+Stack /STK=9 /UG=Rn.33267 /LL=140583 /DEF=Rattus norvegicus checkpoint kinase 1 homolog (S. pombe) (Chek1), mRNA. /PROD=checkpoint kinase 1 homolog (S. pombe) /FL=gb:AF414135.1 gb:AF443592.1 gb:NM_080400.1 NM_080400 CHK1 checkpoint homolog (S. pombe) Chek1 140583 NM_080400 0000077 // DNA damage checkpoint // not recorded /// 0000077 // DNA damage checkpoint // inferred from electronic annotation /// 0000086 // G2/M transition of mitotic cell cycle // inferred from electronic annotation /// 0000086 // G2/M transition of mitotic cell cycle // not recorded /// 0006260 // DNA replication // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006281 // DNA repair // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006975 // DNA damage induced protein phosphorylation // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0031572 // G2/M transition DNA damage checkpoint // inferred from mutant phenotype /// 0033261 // regulation of S phase // inferred from mutant phenotype /// 0071310 // cellular response to organic substance // inferred from expression pattern /// 0071313 // cellular response to caffeine // inferred from expression pattern 0000781 // chromosome, telomeric region // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005657 // replication fork // inferred from electronic annotation /// 0005657 // replication fork // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387063_at NM_021660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021660.1 /DB_XREF=gi:11067376 /GEN=Pius /FEA=FLmRNA /CNT=14 /TID=Rn.41503.1 /TIER=FL+Stack /STK=9 /UG=Rn.41503 /LL=59268 /DEF=Rattus norvegicus PiUS protein (Pius), mRNA. /PROD=PiUS protein /FL=gb:NM_021660.1 gb:AB015723.1 NM_021660 inositol hexakisphosphate kinase 2 Ip6k2 59268 NM_021660 0006817 // phosphate transport // inferred from direct assay /// 0030308 // negative regulation of cell growth // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0046854 // phosphoinositide phosphorylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004428 // inositol or phosphatidylinositol kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008440 // inositol trisphosphate 3-kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387064_at NM_017234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017234.1 /DB_XREF=gi:8394120 /GEN=Pxmp3 /FEA=FLmRNA /CNT=12 /TID=Rn.4065.1 /TIER=FL+Stack /STK=9 /UG=Rn.4065 /LL=29534 /DEF=Rattus norvegicus peroxisomal membrane protein 3, 35 kDa (Pxmp3), mRNA. /PROD=peroxisomal membrane protein 3, 35 kDa /FL=gb:D30617.1 gb:D30616.1 gb:NM_017234.1 NM_017234 peroxisomal membrane protein 3 Pxmp3 29534 NM_017234 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0006699 // bile acid biosynthetic process // inferred from electronic annotation /// 0006699 // bile acid biosynthetic process // not recorded /// 0007031 // peroxisome organization // inferred from electronic annotation /// 0007031 // peroxisome organization // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0045540 // regulation of cholesterol biosynthetic process // inferred from electronic annotation /// 0045540 // regulation of cholesterol biosynthetic process // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0005779 // integral to peroxisomal membrane // inferred from electronic annotation /// 0005779 // integral to peroxisomal membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387065_at NM_080688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080688.1 /DB_XREF=gi:18093099 /GEN=Plcd4 /FEA=FLmRNA /CNT=11 /TID=Rn.37434.1 /TIER=FL+Stack /STK=9 /UG=Rn.37434 /LL=140693 /DEF=Rattus norvegicus phospholipase C, delta 4 (Plcd4), mRNA. /PROD=phospholipase C, delta 4 /FL=gb:NM_080688.1 gb:D50455.1 gb:U16655.1 NM_080688 phospholipase C, delta 4 Plcd4 140693 NM_080688 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007340 // acrosome reaction // not recorded /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // traceable author statement 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004435 // phosphoinositide phospholipase C activity // inferred from direct assay /// 0004435 // phosphoinositide phospholipase C activity // inferred from electronic annotation /// 0004629 // phospholipase C activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387066_a_at NM_019339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019339.1 /DB_XREF=gi:9507042 /GEN=Rgs12 /FEA=FLmRNA /CNT=10 /TID=Rn.9796.1 /TIER=FL+Stack /STK=9 /UG=Rn.9796 /LL=54292 /DEF=Rattus norvegicus regulator of G-protein signaling 12 (Rgs12), mRNA. /PROD=regulator of G-protein signaling 12 /FL=gb:U92280.1 gb:NM_019339.1 NM_019339 regulator of G-protein signaling 12 Rgs12 54292 NM_019339 0007165 // signal transduction // inferred from electronic annotation /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0045744 // negative regulation of G-protein coupled receptor protein signaling pathway // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0005057 // receptor signaling protein activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from direct assay /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0030695 // GTPase regulator activity // not recorded /// 0030695 // GTPase regulator activity // inferred from electronic annotation 1387067_at NM_053614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053614.1 /DB_XREF=gi:16758411 /GEN=Lenep /FEA=FLmRNA /CNT=10 /TID=Rn.10187.1 /TIER=FL+Stack /STK=9 /UG=Rn.10187 /LL=113917 /DEF=Rattus norvegicus lens epithelial protein (Lenep), mRNA. /PROD=lens epithelial protein /FL=gb:U15149.1 gb:NM_053614.1 NM_053614 lens epithelial protein Lenep 113917 NM_053614 1387068_at NM_019361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019361.1 /DB_XREF=gi:9506396 /GEN=Arc /FEA=FLmRNA /CNT=10 /TID=Rn.10086.1 /TIER=FL+Stack /STK=9 /UG=Rn.10086 /LL=54323 /DEF=Rattus norvegicus activity regulated cytoskeletal-associated protein (Arc), mRNA. /PROD=activity regulated cytoskeletal-associatedprotein /FL=gb:U19866.1 gb:NM_019361.1 NM_019361 activity-regulated cytoskeleton-associated protein Arc 54323 NM_019361 0006897 // endocytosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007492 // endoderm development // inferred from electronic annotation /// 0007492 // endoderm development // not recorded /// 0007612 // learning // inferred from expression pattern /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0048168 // regulation of neuronal synaptic plasticity // inferred from expression pattern 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387069_a_at D21158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D21158.1 /DB_XREF=gi:415311 /FEA=FLmRNA /CNT=1 /TID=Rn.44614.2 /TIER=FL /STK=1 /UG=Rn.44614 /LL=24816 /UG_GENE=Tbxa2r /DEF=Rattus norvegicus mRNA for rat thromboxane A2 receptor, complete cds. /PROD=rat thromboxane A2 receptor /FL=gb:D21158.1 D21158 thromboxane A2 receptor Tbxa2r 24816 NM_017054 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007584 // response to nutrient // inferred from expression pattern /// 0019229 // regulation of vasoconstriction // not recorded /// 0019229 // regulation of vasoconstriction // inferred from electronic annotation /// 0019932 // second-messenger-mediated signaling // inferred from electronic annotation /// 0019932 // second-messenger-mediated signaling // not recorded /// 0030104 // water homeostasis // traceable author statement /// 0042493 // response to drug // inferred from expression pattern /// 0045766 // positive regulation of angiogenesis // inferred from direct assay /// 0045777 // positive regulation of blood pressure // inferred from mutant phenotype /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype /// 0045987 // positive regulation of smooth muscle contraction // inferred from electronic annotation /// 0045987 // positive regulation of smooth muscle contraction // not recorded 0001669 // acrosomal vesicle // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004960 // thromboxane receptor activity // inferred from direct assay /// 0004960 // thromboxane receptor activity // not recorded /// 0004960 // thromboxane receptor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005515 // protein binding // not recorded 1387070_at AI044110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044110 /DB_XREF=gi:3291013 /DB_XREF=UI-R-C1-jv-d-06-0-UI.s1 /CLONE=UI-R-C1-jv-d-06-0-UI /FEA=FLmRNA /CNT=51 /TID=Rn.3364.1 /TIER=Stack /STK=24 /UG=Rn.3364 /LL=25359 /UG_GENE=Tmpo /UG_TITLE=Thymopoietin (lamina associated polypeptide 2) /FL=gb:U18314.1 gb:NM_012887.1 AI044110 thymopoietin Tmpo 25359 NM_012887 0031468 // nuclear envelope reassembly // non-traceable author statement /// 0045449 // regulation of transcription // not recorded 0000785 // chromatin // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005637 // nuclear inner membrane // inferred from direct assay /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005521 // lamin binding // traceable author statement 1387071_a_at BE107978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107978 /DB_XREF=gi:8500083 /DB_XREF=UI-R-CA0-awz-a-06-0-UI.s1 /CLONE=UI-R-CA0-awz-a-06-0-UI /FEA=FLmRNA /CNT=55 /TID=Rn.2455.1 /TIER=Stack /STK=14 /UG=Rn.2455 /LL=29477 /UG_GENE=Mapt /UG_TITLE=microtubule-associated protein tau /FL=gb:NM_017212.1 BE107978 microtubule-associated protein tau Mapt 29477 NM_017212 0000226 // microtubule cytoskeleton organization // not recorded /// 0000226 // microtubule cytoskeleton organization // inferred from sequence or structural similarity /// 0006915 // apoptosis // inferred from direct assay /// 0007017 // microtubule-based process // non-traceable author statement /// 0007026 // negative regulation of microtubule depolymerization // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from direct assay /// 0010033 // response to organic substance // inferred from direct assay /// 0030182 // neuron differentiation // non-traceable author statement /// 0031116 // positive regulation of microtubule polymerization // not recorded /// 0031116 // positive regulation of microtubule polymerization // inferred from sequence or structural similarity /// 0045773 // positive regulation of axon extension // not recorded /// 0045773 // positive regulation of axon extension // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from sequence or structural similarity /// 0030424 // axon // inferred from electronic annotation /// 0030426 // growth cone // not recorded /// 0030426 // growth cone // inferred from sequence or structural similarity /// 0035085 // cilium axoneme // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0044295 // axonal growth cone // inferred from direct assay /// 0045298 // tubulin complex // not recorded /// 0045298 // tubulin complex // inferred from sequence or structural similarity 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // inferred from direct assay /// 0008017 // microtubule binding // not recorded /// 0008017 // microtubule binding // inferred from sequence or structural similarity /// 0017124 // SH3 domain binding // not recorded /// 0019899 // enzyme binding // inferred from physical interaction /// 0019899 // enzyme binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from mutant phenotype /// 0034187 // apolipoprotein E binding // not recorded /// 0042802 // identical protein binding // not recorded 1387072_at NM_053794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053794.1 /DB_XREF=gi:16758633 /GEN=Prkwnk1 /FEA=FLmRNA /CNT=34 /TID=Rn.18103.1 /TIER=FL+Stack /STK=8 /UG=Rn.18103 /LL=116477 /DEF=Rattus norvegicus protein kinase, lysine deficient 1 (Prkwnk1), mRNA. /PROD=protein kinase, lysine deficient 1 /FL=gb:AF227741.1 gb:NM_053794.1 NM_053794 WNK lysine deficient protein kinase 1 Wnk1 116477 NM_001002823 /// NM_053794 0003084 // positive regulation of systemic arterial blood pressure // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006811 // ion transport // inferred from sequence or structural similarity /// 0007243 // intracellular protein kinase cascade // inferred from direct assay /// 0007243 // intracellular protein kinase cascade // not recorded /// 0033673 // negative regulation of kinase activity // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0050794 // regulation of cellular process // inferred from sequence or structural similarity 0005625 // soluble fraction // not recorded /// 0005626 // insoluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0042598 // vesicular fraction // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from mutant phenotype /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019870 // potassium channel inhibitor activity // inferred from direct assay /// 0030291 // protein serine/threonine kinase inhibitor activity // inferred from direct assay 1387073_at NM_030991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030991.1 /DB_XREF=gi:13591881 /GEN=Snap25 /FEA=FLmRNA /CNT=31 /TID=Rn.24412.1 /TIER=FL+Stack /STK=8 /UG=Rn.24412 /LL=25012 /DEF=Rattus norvegicus Synaptosomal-associated protein, 25 kDa (Snap25), mRNA. /PROD=synaptosomal-associated protein, 25 kDa /FL=gb:NM_030991.1 gb:AF245227.1 NM_030991 synaptosomal-associated protein 25 Snap25 25012 NM_030991 0006887 // exocytosis // traceable author statement /// 0007269 // neurotransmitter secretion // not recorded /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from expression pattern /// 0007616 // long-term memory // inferred from mutant phenotype /// 0016197 // endosome transport // inferred from direct assay /// 0030252 // growth hormone secretion // inferred from expression pattern /// 0030431 // sleep // inferred from direct assay /// 0032024 // positive regulation of insulin secretion // inferred from expression pattern /// 0046887 // positive regulation of hormone secretion // inferred from mutant phenotype /// 0048791 // calcium ion-dependent exocytosis of neurotransmitter // inferred from direct assay /// 0051963 // regulation of synaptogenesis // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030426 // growth cone // inferred from direct assay /// 0031201 // SNARE complex // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0070032 // synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex // inferred from direct assay /// 0070044 // synaptobrevin 2-SNAP-25-syntaxin-1a complex // inferred from direct assay 0000149 // SNARE binding // inferred from direct assay /// 0000149 // SNARE binding // not recorded /// 0000149 // SNARE binding // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from direct assay /// 0005484 // SNAP receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017022 // myosin binding // inferred from physical interaction /// 0017075 // syntaxin-1 binding // inferred from direct assay /// 0017075 // syntaxin-1 binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0047485 // protein N-terminus binding // inferred from physical interaction 1387074_at AY043246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY043246.1 /DB_XREF=gi:15212235 /GEN=Rgs2 /FEA=FLmRNA /CNT=24 /TID=Rn.1892.1 /TIER=FL+Stack /STK=8 /UG=Rn.1892 /LL=84583 /DEF=Rattus norvegicus regulator of G-protein signaling 2 (Rgs2) mRNA, complete cds. /PROD=regulator of G-protein signaling 2 /FL=gb:AF321837.1 gb:AY043246.1 gb:AF279918.1 gb:NM_053453.1 AY043246 regulator of G-protein signaling 2 Rgs2 84583 NM_053453 0007049 // cell cycle // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0045744 // negative regulation of G-protein coupled receptor protein signaling pathway // traceable author statement /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387075_at NM_012740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012740.1 /DB_XREF=gi:6981651 /GEN=Th /FEA=FLmRNA /CNT=37 /TID=Rn.11082.1 /TIER=FL+Stack /STK=8 /UG=Rn.11082 /LL=25085 /DEF=Rattus norvegicus Tyrosine hydroxylase (Th), mRNA. /PROD=tyrosine hydroxylase /FL=gb:M10244.1 gb:NM_012740.1 gb:L22651.1 NM_012740 tyrosine hydroxylase Th 25085 NM_012740 0001666 // response to hypoxia // inferred from direct assay /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001963 // synaptic transmission, dopaminergic // inferred from electronic annotation /// 0001963 // synaptic transmission, dopaminergic // not recorded /// 0006585 // dopamine biosynthetic process from tyrosine // inferred from direct assay /// 0006585 // dopamine biosynthetic process from tyrosine // inferred from mutant phenotype /// 0006585 // dopamine biosynthetic process from tyrosine // not recorded /// 0006585 // dopamine biosynthetic process from tyrosine // inferred from electronic annotation /// 0006950 // response to stress // inferred from expression pattern /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007601 // visual perception // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0007612 // learning // inferred from electronic annotation /// 0007612 // learning // not recorded /// 0007613 // memory // inferred from electronic annotation /// 0007613 // memory // not recorded /// 0007617 // mating behavior // inferred from electronic annotation /// 0007617 // mating behavior // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0008016 // regulation of heart contraction // not recorded /// 0009072 // aromatic amino acid family metabolic process // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0042136 // neurotransmitter biosynthetic process // inferred from electronic annotation /// 0042416 // dopamine biosynthetic process // not recorded /// 0042416 // dopamine biosynthetic process // inferred from electronic annotation /// 0042418 // epinephrine biosynthetic process // inferred from electronic annotation /// 0042418 // epinephrine biosynthetic process // not recorded /// 0042421 // norepinephrine biosynthetic process // inferred from electronic annotation /// 0042421 // norepinephrine biosynthetic process // not recorded /// 0042423 // catecholamine biosynthetic process // inferred from direct assay /// 0042423 // catecholamine biosynthetic process // traceable author statement /// 0042423 // catecholamine biosynthetic process // inferred from electronic annotation /// 0042462 // eye photoreceptor cell development // inferred from electronic annotation /// 0042462 // eye photoreceptor cell development // not recorded /// 0042755 // eating behavior // inferred from electronic annotation /// 0042755 // eating behavior // not recorded /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045471 // response to ethanol // not recorded /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0048596 // embryonic camera-type eye morphogenesis // inferred from electronic annotation /// 0048596 // embryonic camera-type eye morphogenesis // not recorded /// 0051289 // protein homotetramerization // traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005790 // smooth endoplasmic reticulum // inferred from electronic annotation /// 0005790 // smooth endoplasmic reticulum // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0008021 // synaptic vesicle // inferred from direct assay /// 0009898 // internal side of plasma membrane // inferred from electronic annotation /// 0009898 // internal side of plasma membrane // not recorded /// 0019717 // synaptosome // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0033162 // melanosome membrane // inferred from electronic annotation /// 0033162 // melanosome membrane // not recorded /// 0043005 // neuron projection // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043195 // terminal button // inferred from direct assay /// 0043204 // perikaryon // inferred from electronic annotation /// 0043204 // perikaryon // not recorded 0004497 // monooxygenase activity // inferred from direct assay /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004511 // tyrosine 3-monooxygenase activity // inferred from direct assay /// 0004511 // tyrosine 3-monooxygenase activity // not recorded /// 0004511 // tyrosine 3-monooxygenase activity // traceable author statement /// 0004511 // tyrosine 3-monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008198 // ferrous iron binding // inferred from direct assay /// 0008199 // ferric iron binding // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from direct assay /// 0016597 // amino acid binding // inferred from physical interaction /// 0016714 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0019825 // oxygen binding // inferred from direct assay /// 0034617 // tetrahydrobiopterin binding // inferred from direct assay /// 0035240 // dopamine binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1387076_at NM_024359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024359.1 /DB_XREF=gi:13242248 /GEN=Hif1a /FEA=FLmRNA /CNT=24 /TID=Rn.10852.1 /TIER=FL+Stack /STK=8 /UG=Rn.10852 /LL=29560 /DEF=Rattus norvegicus hypoxia inducible factor 1, alpha subunit (Hif1a), mRNA. /PROD=hypoxia inducible factor 1, alpha subunit /FL=gb:AF057308.1 gb:NM_024359.1 NM_024359 hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) Hif1a 29560 NM_024359 0001525 // angiogenesis // not recorded /// 0001666 // response to hypoxia // inferred from direct assay /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from sequence or structural similarity /// 0001755 // neural crest cell migration // not recorded /// 0001837 // epithelial to mesenchymal transition // not recorded /// 0001892 // embryonic placenta development // not recorded /// 0001947 // heart looping // not recorded /// 0002248 // connective tissue replacement involved in inflammatory response wound healing // not recorded /// 0006089 // lactate metabolic process // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0006879 // cellular iron ion homeostasis // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010468 // regulation of gene expression // not recorded /// 0010575 // positive regulation vascular endothelial growth factor production // not recorded /// 0010634 // positive regulation of epithelial cell migration // not recorded /// 0014850 // response to muscle activity // not recorded /// 0030154 // cell differentiation // not recorded /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0032364 // oxygen homeostasis // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0032909 // regulation of transforming growth factor-beta2 production // not recorded /// 0032963 // collagen metabolic process // not recorded /// 0035162 // embryonic hemopoiesis // not recorded /// 0042541 // hemoglobin biosynthetic process // not recorded /// 0042593 // glucose homeostasis // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043619 // regulation of transcription from RNA polymerase II promoter in response to oxidative stress // inferred from mutant phenotype /// 0043619 // regulation of transcription from RNA polymerase II promoter in response to oxidative stress // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045648 // positive regulation of erythrocyte differentiation // not recorded /// 0045926 // negative regulation of growth // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046716 // muscle cell homeostasis // not recorded /// 0046886 // positive regulation of hormone biosynthetic process // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0050790 // regulation of catalytic activity // not recorded /// 0051216 // cartilage development // not recorded /// 0051541 // elastin metabolic process // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // traceable author statement /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0009434 // microtubule-based flagellum // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003690 // double-stranded DNA binding // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003702 // RNA polymerase II transcription factor activity // traceable author statement /// 0003704 // specific RNA polymerase II transcription factor activity // inferred from direct assay /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0035035 // histone acetyltransferase binding // not recorded /// 0035035 // histone acetyltransferase binding // inferred from sequence or structural similarity /// 0042826 // histone deacetylase binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from sequence or structural similarity /// 0051879 // Hsp90 protein binding // not recorded 1387077_at NM_031660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031660.1 /DB_XREF=gi:13928913 /GEN=Arpp19 /FEA=FLmRNA /CNT=14 /TID=Rn.11472.1 /TIER=FL+Stack /STK=8 /UG=Rn.11472 /LL=60336 /DEF=Rattus norvegicus cyclic AMP phosphoprotein, 19kD (Arpp19), mRNA. /PROD=cyclic AMP phosphoprotein, 19kD /FL=gb:NM_031660.1 NM_031660 cAMP-regulated phosphoprotein 19 /// cAMP-regulated phosphoprotein 19-like Arpp19 /// LOC100360828 100360828 /// 60336 NM_031660 /// XM_002727104 /// XM_002729972 0007212 // dopamine receptor signaling pathway // inferred from expression pattern /// 0045722 // positive regulation of gluconeogenesis // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation 0005102 // receptor binding // not recorded /// 0015459 // potassium channel regulator activity // not recorded 1387078_at NM_031002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031002.1 /DB_XREF=gi:13591897 /GEN=Inpp4a /FEA=FLmRNA /CNT=17 /TID=Rn.11215.1 /TIER=FL+Stack /STK=8 /UG=Rn.11215 /LL=80849 /DEF=Rattus norvegicus inositol polyphosphate-4-phosphatase, type I, 107kD (Inpp4a), mRNA. /PROD=inositol polyphosphate-4-phosphatase, type I,107kD /FL=gb:U26397.1 gb:NM_031002.1 NM_031002 inositol polyphosphate-4-phosphatase, type 1 Inpp4a 80849 NM_031002 0016316 // phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity // traceable author statement /// 0016316 // phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0034597 // phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity // inferred from electronic annotation 1387079_at M57405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M57405.1 /DB_XREF=gi:204277 /FEA=FLmRNA /CNT=15 /TID=Rn.1974.1 /TIER=FL /STK=1 /UG=Rn.1974 /LL=25201 /UG_GENE=Gucy1a3 /DEF=Rat soluble guanylate cyclase 82kDa subunit mRNA, complete cds. /PROD=guanylate cyclase /FL=gb:NM_017090.1 gb:M57405.1 gb:U60835.1 M57405 guanylate cyclase 1, soluble, alpha 3 Gucy1a3 497757 NM_017090 0006182 // cGMP biosynthetic process // inferred from direct assay /// 0006182 // cGMP biosynthetic process // not recorded /// 0006182 // cGMP biosynthetic process // inferred from electronic annotation /// 0007263 // nitric oxide mediated signal transduction // inferred from direct assay /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008217 // regulation of blood pressure // not recorded /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0009635 // response to herbicide // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030828 // positive regulation of cGMP biosynthetic process // inferred from electronic annotation /// 0030828 // positive regulation of cGMP biosynthetic process // not recorded /// 0052565 // response to defense-related host nitric oxide production // inferred from electronic annotation /// 0052565 // response to defense-related host nitric oxide production // not recorded /// 0060087 // relaxation of vascular smooth muscle // inferred from electronic annotation /// 0060087 // relaxation of vascular smooth muscle // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0008074 // guanylate cyclase complex, soluble // inferred from direct assay /// 0008074 // guanylate cyclase complex, soluble // traceable author statement /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // inferred from direct assay /// 0004383 // guanylate cyclase activity // traceable author statement /// 0004383 // guanylate cyclase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0043167 // ion binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay 1387080_at NM_031583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031583.1 /DB_XREF=gi:13928789 /GEN=Cspg6 /FEA=FLmRNA /CNT=25 /TID=Rn.11074.1 /TIER=FL+Stack /STK=8 /UG=Rn.11074 /LL=29486 /DEF=Rattus norvegicus chondroitin sulfate proteoglycan 6 (Cspg6), mRNA. /PROD=chondroitin sulfate proteoglycan 6 /FL=gb:NM_031583.1 gb:U82626.1 NM_031583 structural maintenance of chromosomes 3 Smc3 29486 NM_031583 0006275 // regulation of DNA replication // inferred from sequence or structural similarity /// 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007052 // mitotic spindle organization // not recorded /// 0007052 // mitotic spindle organization // inferred from sequence or structural similarity /// 0007062 // sister chromatid cohesion // not recorded /// 0007067 // mitosis // inferred from electronic annotation /// 0007126 // meiosis // not recorded /// 0007126 // meiosis // inferred from sequence or structural similarity /// 0007126 // meiosis // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from sequence or structural similarity /// 0032876 // negative regulation of DNA endoreduplication // not recorded /// 0051276 // chromosome organization // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000785 // chromatin // not recorded /// 0000785 // chromatin // inferred from sequence or structural similarity /// 0000800 // lateral element // not recorded /// 0000922 // spindle pole // not recorded /// 0000922 // spindle pole // inferred from sequence or structural similarity /// 0005604 // basement membrane // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0016363 // nuclear matrix // not recorded /// 0016363 // nuclear matrix // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // inferred from expression pattern /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0045502 // dynein binding // not recorded /// 0045502 // dynein binding // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // not recorded 1387081_at NM_017132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017132.1 /DB_XREF=gi:8394170 /GEN=Rcn2 /FEA=FLmRNA /CNT=14 /TID=Rn.6133.1 /TIER=FL+Stack /STK=8 /UG=Rn.6133 /LL=29218 /DEF=Rattus norvegicus reticulocalbin 2 (Rcn2), mRNA. /PROD=reticulocalbin 2 /FL=gb:NM_017132.1 gb:U15734.1 NM_017132 reticulocalbin 2, EF-hand calcium binding domain Rcn2 29218 NM_017132 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1387082_at NM_053348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053348.1 /DB_XREF=gi:17865326 /GEN=Fetub /FEA=FLmRNA /CNT=13 /TID=Rn.2464.1 /TIER=FL+Stack /STK=8 /UG=Rn.2464 /LL=83928 /DEF=Rattus norvegicus fetuin beta (Fetub), mRNA. /PROD=fetuin beta /FL=gb:NM_053348.1 NM_053348 fetuin B Fetub 83928 NM_053348 0005576 // extracellular region // inferred from electronic annotation 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation 1387083_at NM_017129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017129.1 /DB_XREF=gi:8393211 /GEN=Ctf1 /FEA=FLmRNA /CNT=12 /TID=Rn.10253.1 /TIER=FL+Stack /STK=8 /UG=Rn.10253 /LL=29201 /DEF=Rattus norvegicus cardiotrophin 1 (Ctf1), mRNA. /PROD=cardiotrophin 1 /FL=gb:NM_017129.1 gb:D78591.1 NM_017129 cardiotrophin 1 Ctf1 29201 NM_017129 0006955 // immune response // inferred from electronic annotation /// 0007399 // nervous system development // inferred from direct assay /// 0048666 // neuron development // inferred from electronic annotation /// 0048666 // neuron development // not recorded /// 0048861 // leukemia inhibitory factor signaling pathway // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from mutant phenotype /// 0005125 // cytokine activity // traceable author statement /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005146 // leukemia inhibitory factor receptor binding // inferred from mutant phenotype 1387084_at NM_012789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012789.1 /DB_XREF=gi:6978772 /GEN=Dpp4 /FEA=FLmRNA /CNT=21 /TID=Rn.1862.1 /TIER=FL /STK=3 /UG=Rn.1862 /LL=25253 /DEF=Rattus norvegicus Dipeptidyl peptidase 4 (Dpp4), mRNA. /PROD=dipeptidyl peptidase 4 /FL=gb:J02997.1 gb:NM_012789.1 gb:J04591.1 NM_012789 dipeptidylpeptidase 4 Dpp4 25253 NM_012789 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0002709 // regulation of T cell mediated immunity // inferred from mutant phenotype /// 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0010716 // negative regulation of extracellular matrix disassembly // not recorded /// 0010716 // negative regulation of extracellular matrix disassembly // inferred from sequence or structural similarity /// 0010716 // negative regulation of extracellular matrix disassembly // inferred from electronic annotation /// 0031295 // T cell costimulation // not recorded /// 0031295 // T cell costimulation // inferred from sequence or structural similarity /// 0031295 // T cell costimulation // inferred from electronic annotation /// 0033632 // regulation of cell-cell adhesion mediated by integrin // inferred from electronic annotation /// 0033632 // regulation of cell-cell adhesion mediated by integrin // not recorded /// 0042110 // T cell activation // inferred from electronic annotation /// 0042110 // T cell activation // not recorded /// 0043542 // endothelial cell migration // not recorded /// 0043542 // endothelial cell migration // inferred from sequence or structural similarity /// 0043542 // endothelial cell migration // inferred from electronic annotation /// 0051234 // establishment of localization // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // inferred from mutant phenotype /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0030027 // lamellipodium // not recorded /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030139 // endocytic vesicle // not recorded /// 0030139 // endocytic vesicle // inferred from sequence or structural similarity /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0031258 // lamellipodium membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0046581 // intercellular canaliculus // inferred from electronic annotation /// 0046581 // intercellular canaliculus // not recorded /// 0071438 // invadopodium membrane // not recorded /// 0071438 // invadopodium membrane // inferred from sequence or structural similarity /// 0071438 // invadopodium membrane // inferred from electronic annotation 0002020 // protease binding // not recorded /// 0002020 // protease binding // inferred from sequence or structural similarity /// 0002020 // protease binding // inferred from electronic annotation /// 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from sequence or structural similarity /// 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005518 // collagen binding // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // not recorded /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0008239 // dipeptidyl-peptidase activity // inferred from direct assay /// 0008239 // dipeptidyl-peptidase activity // inferred from mutant phenotype /// 0008239 // dipeptidyl-peptidase activity // not recorded /// 0008239 // dipeptidyl-peptidase activity // inferred from sequence or structural similarity /// 0008239 // dipeptidyl-peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from mutant phenotype /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation 1387085_at M29392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M29392.1 /DB_XREF=gi:206425 /FEA=FLmRNA /CNT=14 /TID=Rn.9761.1 /TIER=FL /STK=2 /UG=Rn.9761 /LL=29562 /UG_GENE=Prps1 /UG_TITLE=phosphoribosyl pyrophosphate synthetase 1 /DEF=Rat phosphoribosylpyrophosphate synthetase (PRPS1) mRNA, complete cds. /FL=gb:M17258.1 gb:NM_017243.1 gb:M29392.1 M29392 phosphoribosyl pyrophosphate synthetase 1 Prps1 29562 NM_017243 0006144 // purine base metabolic process // not recorded /// 0006164 // purine nucleotide biosynthetic process // not recorded /// 0006167 // AMP biosynthetic process // inferred from direct assay /// 0007399 // nervous system development // not recorded /// 0009116 // nucleoside metabolic process // inferred from electronic annotation /// 0009156 // ribonucleoside monophosphate biosynthetic process // inferred from electronic annotation /// 0009165 // nucleotide biosynthetic process // inferred from direct assay /// 0009165 // nucleotide biosynthetic process // inferred from electronic annotation /// 0019693 // ribose phosphate metabolic process // inferred from direct assay /// 0031100 // organ regeneration // inferred from expression pattern /// 0034418 // urate biosynthetic process // not recorded /// 0044249 // cellular biosynthetic process // inferred from electronic annotation /// 0046101 // hypoxanthine biosynthetic process // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004749 // ribose phosphate diphosphokinase activity // inferred from direct assay /// 0004749 // ribose phosphate diphosphokinase activity // not recorded /// 0004749 // ribose phosphate diphosphokinase activity // inferred from sequence or structural similarity /// 0004749 // ribose phosphate diphosphokinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from direct assay /// 0016208 // AMP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019003 // GDP binding // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0043531 // ADP binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1387086_at NM_053334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053334.1 /DB_XREF=gi:16758043 /GEN=Caml /FEA=FLmRNA /CNT=13 /TID=Rn.8446.1 /TIER=FL+Stack /STK=8 /UG=Rn.8446 /LL=81715 /DEF=Rattus norvegicus calcium modulating ligand (Caml), mRNA. /PROD=calcium modulating ligand /FL=gb:AF302085.1 gb:NM_053334.1 NM_053334 calcium modulating ligand Camlg 81715 NM_053334 0001881 // receptor recycling // not recorded /// 0001881 // receptor recycling // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // not recorded /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from electronic annotation 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0050839 // cell adhesion molecule binding // inferred from physical interaction 1387087_at NM_024125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024125.1 /DB_XREF=gi:13162293 /GEN=Cebpb /FEA=FLmRNA /CNT=12 /TID=Rn.6479.1 /TIER=FL+Stack /STK=8 /UG=Rn.6479 /LL=24253 /DEF=Rattus norvegicus Liver activating protein (LAP, also NF-IL6, nuclear factor-IL6, previously designated TCF5) (Cebpb), mRNA. /PROD=liver activating protein (LAP, also NF-IL6,nuclear factor-IL6, previously designated TCF5) /FL=gb:M57235.1 gb:NM_024125.1 NM_024125 CCAAT/enhancer binding protein (C/EBP), beta Cebpb 24253 NM_024125 0001892 // embryonic placenta development // inferred from electronic annotation /// 0001892 // embryonic placenta development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred by curator /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0032496 // response to lipopolysaccharide // not recorded /// 0033598 // mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0033598 // mammary gland epithelial cell proliferation // not recorded /// 0045408 // regulation of interleukin-6 biosynthetic process // inferred from electronic annotation /// 0045408 // regulation of interleukin-6 biosynthetic process // not recorded /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045444 // fat cell differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0050873 // brown fat cell differentiation // not recorded /// 0060644 // mammary gland epithelial cell differentiation // inferred from electronic annotation /// 0060644 // mammary gland epithelial cell differentiation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016363 // nuclear matrix // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // traceable author statement /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // not recorded /// 0046983 // protein dimerization activity // inferred from electronic annotation 1387088_at NM_033237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_033237.1 /DB_XREF=gi:15147220 /GEN=Gal /FEA=FLmRNA /CNT=11 /TID=Rn.8929.1 /TIER=FL+Stack /STK=8 /UG=Rn.8929 /LL=29141 /DEF=Rattus norvegicus galanin (Gal), mRNA. /PROD=galanin /FL=gb:M18102.1 gb:J03624.1 gb:NM_033237.1 NM_033237 galanin prepropeptide Gal 29141 NM_033237 0006950 // response to stress // inferred from expression pattern /// 0006954 // inflammatory response // inferred from direct assay /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007218 // neuropeptide signaling pathway // traceable author statement /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007631 // feeding behavior // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0031943 // regulation of glucocorticoid metabolic process // inferred from mutant phenotype /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from direct assay /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0050672 // negative regulation of lymphocyte proliferation // inferred from direct assay /// 0050776 // regulation of immune response // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay 0001664 // G-protein-coupled receptor binding // traceable author statement /// 0005179 // hormone activity // inferred from electronic annotation 1387089_at NM_133528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133528.1 /DB_XREF=gi:19424179 /GEN=Prei3 /FEA=FLmRNA /CNT=22 /TID=Rn.12262.1 /TIER=FL+Stack /STK=8 /UG=Rn.12262 /LL=171050 /DEF=Rattus norvegicus preimplantation protein 3 (Prei3), mRNA. /PROD=preimplantation protein 3 /FL=gb:NM_133528.1 NM_133528 MOB1, Mps One Binder kinase activator-like 3 (yeast) Mobkl3 171050 NM_133528 0006810 // transport // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387090_a_at NM_024135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024135.1 /DB_XREF=gi:13162309 /GEN=Link2 /FEA=FLmRNA /CNT=16 /TID=Rn.11013.1 /TIER=FL+Stack /STK=8 /UG=Rn.11013 /LL=29524 /DEF=Rattus norvegicus LIM motif-containing protein kinase 2 (Link2), mRNA. /PROD=LIM motif-containing protein kinase 2 /FL=gb:NM_024135.1 gb:D31877.1 NM_024135 LIM domain kinase 2 Limk2 29524 NM_024135 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007286 // spermatid development // traceable author statement 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005801 // cis-Golgi network // inferred from electronic annotation /// 0005801 // cis-Golgi network // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1387091_at NM_017226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017226.1 /DB_XREF=gi:8393934 /GEN=Pdi2 /FEA=FLmRNA /CNT=12 /TID=Rn.37619.1 /TIER=FL+Stack /STK=8 /UG=Rn.37619 /LL=29511 /DEF=Rattus norvegicus peptidyl arginine deiminase, type II (Pdi2), mRNA. /PROD=peptidyl arginine deiminase, type II /FL=gb:NM_017226.1 NM_017226 peptidyl arginine deiminase, type II Padi2 29511 NM_017226 0006464 // protein modification process // inferred from electronic annotation /// 0018101 // peptidyl-citrulline biosynthetic process from peptidyl-arginine // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004668 // protein-arginine deiminase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387092_at NM_022388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022388.1 /DB_XREF=gi:11693155 /GEN=Fxyd4 /FEA=FLmRNA /CNT=11 /TID=Rn.105.1 /TIER=FL+Stack /STK=8 /UG=Rn.105 /LL=64190 /DEF=Rattus norvegicus corticosteroid-induced protein (Fxyd4), mRNA. /PROD=corticosteroid-induced protein precursor /FL=gb:NM_022388.1 gb:L41254.1 NM_022388 FXYD domain-containing ion transport regulator 4 Fxyd4 64190 NM_022388 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 1387093_at NM_131906 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_131906.1 /DB_XREF=gi:18777754 /GEN=Slc21a5 /FEA=FLmRNA /CNT=14 /TID=Rn.5641.1 /TIER=FL+Stack /STK=8 /UG=Rn.5641 /LL=170698 /DEF=Rattus norvegicus solute carrier family 21 (organic anion transporter), member 5 (Slc21a5), mRNA. /PROD=solute carrier family 21 (organic aniontransporter), member 5 /FL=gb:U95011.1 gb:NM_131906.1 gb:U88036.1 NM_131906 solute carrier organic anion transporter family, member 1a4 Slco1a4 170698 NM_131906 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006820 // anion transport // not recorded /// 0015711 // organic anion transport // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0043252 // sodium-independent organic anion transport // inferred from direct assay 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0008514 // organic anion transmembrane transporter activity // inferred from direct assay /// 0008514 // organic anion transmembrane transporter activity // not recorded /// 0015125 // bile acid transmembrane transporter activity // inferred from direct assay /// 0015125 // bile acid transmembrane transporter activity // not recorded 1387094_at U95011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U95011.1 /DB_XREF=gi:2738222 /FEA=FLmRNA /CNT=14 /TID=Rn.5641.1 /TIER=FL /STK=1 /UG=Rn.5641 /LL=170698 /UG_GENE=Slc21a5 /DEF=Rattus norvegicus brain-specific organic anion transporter mRNA, complete cds. /PROD=brain-specific organic anion transporter /FL=gb:U95011.1 gb:NM_131906.1 gb:U88036.1 U95011 solute carrier organic anion transporter family, member 1a4 Slco1a4 170698 NM_131906 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006820 // anion transport // not recorded /// 0015711 // organic anion transport // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0043252 // sodium-independent organic anion transport // inferred from direct assay 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0008514 // organic anion transmembrane transporter activity // inferred from direct assay /// 0008514 // organic anion transmembrane transporter activity // not recorded /// 0015125 // bile acid transmembrane transporter activity // inferred from direct assay /// 0015125 // bile acid transmembrane transporter activity // not recorded 1387095_at J03773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J03773.1 /DB_XREF=gi:204546 /FEA=FLmRNA /CNT=13 /TID=Rn.10943.1 /TIER=FL /STK=1 /UG=Rn.10943 /LL=25740 /UG_GENE=Gnaz /UG_TITLE=Guanine nucleotide binding protein, alpha /DEF=Rat guanine nucleotide-binding regulatory protein alpha subunit mRNA, complete cds. /FL=gb:J03773.1 gb:NM_013189.1 J03773 guanine nucleotide binding protein (G protein), alpha z polypeptide Gnaz 25740 NM_013189 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from mutant phenotype /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // inferred from mutant phenotype 0005834 // heterotrimeric G-protein complex // traceable author statement /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031821 // metabotropic serotonin receptor binding // inferred from physical interaction 1387096_at NM_040669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_040669.1 /DB_XREF=gi:16163667 /GEN=Hps /FEA=FLmRNA /CNT=12 /TID=Rn.17691.1 /TIER=FL+Stack /STK=8 /UG=Rn.17691 /LL=114638 /DEF=Rattus norvegicus Hermansky-Pudlak syndrome (Hps), mRNA. /PROD=Hermansky-Pudlak syndrome /FL=gb:NM_040669.1 gb:AF333325.1 NM_040669 Hermansky-Pudlak syndrome 1 homolog (human) Hps1 114638 NM_040669 0006996 // organelle organization // not recorded /// 0007596 // blood coagulation // not recorded /// 0030318 // melanocyte differentiation // not recorded /// 0032816 // positive regulation of natural killer cell activation // not recorded /// 0033299 // secretion of lysosomal enzymes // not recorded /// 0043473 // pigmentation // not recorded 0016023 // cytoplasmic membrane-bounded vesicle // not recorded 0005515 // protein binding // not recorded /// 0046983 // protein dimerization activity // not recorded 1387097_at NM_031635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031635.1 /DB_XREF=gi:13994174 /GEN=Fut2 /FEA=FLmRNA /CNT=11 /TID=Rn.10678.1 /TIER=FL+Stack /STK=8 /UG=Rn.10678 /LL=58924 /DEF=Rattus norvegicus fucosyltransferase 2 (Fut2), mRNA. /PROD=fucosyltransferase 2 /FL=gb:NM_031635.1 gb:AB006138.1 gb:AF264005.1 NM_031635 fucosyltransferase 2 (secretor status included) Fut2 58924 NM_031635 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006486 // protein glycosylation // inferred from electronic annotation /// 0006486 // protein glycosylation // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0008107 // galactoside 2-alpha-L-fucosyltransferase activity // inferred from direct assay /// 0008107 // galactoside 2-alpha-L-fucosyltransferase activity // not recorded /// 0008107 // galactoside 2-alpha-L-fucosyltransferase activity // inferred from electronic annotation /// 0008417 // fucosyltransferase activity // inferred from electronic annotation /// 0008417 // fucosyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1387098_at NM_031772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031772.1 /DB_XREF=gi:13929085 /GEN=Rpo1-4 /FEA=FLmRNA /CNT=10 /TID=Rn.24877.1 /TIER=FL+Stack /STK=8 /UG=Rn.24877 /LL=83581 /DEF=Rattus norvegicus RNA polymerase I (194 kDa subunit) (Rpo1-4), mRNA. /PROD=RNA polymerase I (194 kDa subunit) /FL=gb:NM_031772.1 gb:AF025425.1 NM_031772 polymerase (RNA) I polypeptide A Polr1a 83581 NM_031772 0006350 // transcription // inferred from electronic annotation /// 0009303 // rRNA transcription // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005736 // DNA-directed RNA polymerase I complex // inferred from direct assay /// 0005736 // DNA-directed RNA polymerase I complex // not recorded /// 0005736 // DNA-directed RNA polymerase I complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from direct assay /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387099_at NM_053838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053838.1 /DB_XREF=gi:16758693 /GEN=Npr2 /FEA=FLmRNA /CNT=9 /TID=Rn.32984.1 /TIER=FL+Stack /STK=8 /UG=Rn.32984 /LL=116564 /DEF=Rattus norvegicus natriuretic peptide receptor 2 (Npr2), mRNA. /PROD=natriuretic peptide receptor 2 /FL=gb:NM_053838.1 gb:M26896.1 NM_053838 natriuretic peptide receptor B/guanylate cyclase B (atrionatriuretic peptide receptor B) Npr2 116564 NM_053838 0001503 // ossification // inferred from electronic annotation /// 0006182 // cGMP biosynthetic process // inferred from direct assay /// 0006182 // cGMP biosynthetic process // inferred from mutant phenotype /// 0006182 // cGMP biosynthetic process // not recorded /// 0006182 // cGMP biosynthetic process // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007168 // receptor guanylyl cyclase signaling pathway // inferred from electronic annotation /// 0007168 // receptor guanylyl cyclase signaling pathway // not recorded /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0060348 // bone development // inferred from electronic annotation /// 0060348 // bone development // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // inferred from direct assay /// 0004383 // guanylate cyclase activity // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation /// 0008528 // peptide receptor activity, G-protein coupled // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation /// 0016941 // natriuretic peptide receptor activity // inferred from direct assay /// 0016941 // natriuretic peptide receptor activity // inferred from mutant phenotype /// 0016941 // natriuretic peptide receptor activity // not recorded /// 0016941 // natriuretic peptide receptor activity // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred from direct assay /// 0017046 // peptide hormone binding // inferred from mutant phenotype /// 0042562 // hormone binding // not recorded /// 0042562 // hormone binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1387100_at NM_031703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031703.1 /DB_XREF=gi:13928979 /GEN=Aqp3 /FEA=FLmRNA /CNT=9 /TID=Rn.11109.1 /TIER=FL+Stack /STK=8 /UG=Rn.11109 /LL=65133 /DEF=Rattus norvegicus aquaporin 3 (Aqp3), mRNA. /PROD=aquaporin 3 /FL=gb:L35108.1 gb:NM_031703.1 NM_031703 aquaporin 3 Aqp3 65133 NM_031703 0002684 // positive regulation of immune system process // inferred from electronic annotation /// 0002684 // positive regulation of immune system process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006833 // water transport // inferred from direct assay /// 0006833 // water transport // not recorded /// 0006833 // water transport // inferred from electronic annotation /// 0015793 // glycerol transport // inferred from electronic annotation /// 0015793 // glycerol transport // not recorded /// 0015840 // urea transport // inferred from electronic annotation /// 0015840 // urea transport // not recorded /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032526 // response to retinoic acid // not recorded /// 0042476 // odontogenesis // inferred from electronic annotation /// 0042476 // odontogenesis // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070295 // renal water absorption // inferred from electronic annotation /// 0070295 // renal water absorption // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded 0005215 // transporter activity // inferred from electronic annotation /// 0015250 // water channel activity // inferred from direct assay /// 0015254 // glycerol channel activity // inferred from electronic annotation /// 0015254 // glycerol channel activity // not recorded 1387101_at NM_053623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053623.1 /DB_XREF=gi:16758425 /GEN=Facl4 /FEA=FLmRNA /CNT=21 /TID=Rn.2366.1 /TIER=FL+Stack /STK=8 /UG=Rn.2366 /LL=113976 /DEF=Rattus norvegicus fatty acid-Coenzyme A ligase, long chain 4 (Facl4), mRNA. /PROD=fatty acid-Coenzyme A ligase, long chain 4 /FL=gb:D85189.1 gb:NM_053623.1 NM_053623 acyl-CoA synthetase long-chain family member 4 Acsl4 113976 NM_053623 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // traceable author statement /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from genetic interaction /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0015908 // fatty acid transport // inferred from genetic interaction /// 0060136 // embryonic process involved in female pregnancy // inferred from electronic annotation /// 0060136 // embryonic process involved in female pregnancy // not recorded /// 0060996 // dendritic spine development // inferred from mutant phenotype /// 0070672 // response to interleukin-15 // inferred from expression pattern 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from direct assay /// 0004467 // long-chain fatty acid-CoA ligase activity // not recorded /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1387102_at L22536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L22536.1 /DB_XREF=gi:425188 /GEN=KOR-1 /FEA=FLmRNA /CNT=13 /TID=Rn.10122.1 /TIER=FL /STK=1 /UG=Rn.10122 /LL=29335 /DEF=Rattus norvegicus kappa opioid receptor (KOR-1) mRNA, complete cds. /PROD=kappa opioid receptor /FL=gb:L22001.1 gb:D16534.1 gb:NM_017167.1 gb:U00442.1 gb:D16829.1 gb:L22536.1 L22536 opioid receptor, kappa 1 Oprk1 29335 NM_017167 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004985 // opioid receptor activity // inferred from electronic annotation /// 0004987 // kappa-opioid receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387103_s_at NM_031720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031720.2 /DB_XREF=gi:19923694 /GEN=Dio2 /FEA=FLmRNA /CNT=3 /TID=Rn.10563.1 /TIER=FL /STK=1 /UG=Rn.10563 /LL=65162 /DEF=Rattus norvegicus deiodinase, iodothyronine, type II (Dio2), mRNA. /PROD=deiodinase, iodothyronine, type II /FL=gb:U53505.1 gb:NM_031720.2 NM_031720 solute carrier family 25 (mitochondrial carrier, brain), member 14 Slc25a14 85263 NM_053501 0006810 // transport // inferred from electronic annotation /// 0006839 // mitochondrial transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005740 // mitochondrial envelope // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1387104_at NM_031548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031548.1 /DB_XREF=gi:13928741 /GEN=Scnn1a /FEA=FLmRNA /CNT=10 /TID=Rn.9808.1 /TIER=FL+Stack /STK=8 /UG=Rn.9808 /LL=25122 /DEF=Rattus norvegicus Sodium channel, nonvoltage-gated 1, alpha (epithelial) (Scnn1a), mRNA. /PROD=sodium channel, nonvoltage-gated 1, alpha(epithelial) /FL=gb:U54700.1 gb:NM_031548.1 gb:U54699.1 NM_031548 sodium channel, nonvoltage-gated, type I, alpha Scnn1a 25122 NM_031548 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // not recorded /// 0006814 // sodium ion transport // non-traceable author statement /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0008217 // regulation of blood pressure // traceable author statement /// 0034220 // ion transmembrane transport // not recorded /// 0050878 // regulation of body fluid levels // inferred from mutant phenotype /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // non-traceable author statement /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // inferred from direct assay /// 0034706 // sodium channel complex // inferred from electronic annotation /// 0034706 // sodium channel complex // not recorded 0003779 // actin binding // inferred from direct assay /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // not recorded /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015280 // ligand-gated sodium channel activity // inferred from direct assay /// 0015280 // ligand-gated sodium channel activity // inferred from electronic annotation /// 0015280 // ligand-gated sodium channel activity // not recorded /// 0015280 // ligand-gated sodium channel activity // non-traceable author statement /// 0050699 // WW domain binding // inferred from physical interaction /// 0050699 // WW domain binding // not recorded /// 0050699 // WW domain binding // inferred from electronic annotation 1387105_at NM_133579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133579.1 /DB_XREF=gi:19424269 /GEN=Znf22 /FEA=FLmRNA /CNT=10 /TID=Rn.9264.1 /TIER=FL+Stack /STK=8 /UG=Rn.9264 /LL=171110 /DEF=Rattus norvegicus zinc finger protein 22 (KOX 15) (Znf22), mRNA. /PROD=zinc finger protein 22 (KOX 15) /FL=gb:NM_133579.1 gb:AF281635.1 NM_133579 zinc finger protein 422 Zfp422 360389 NM_001012745 0006350 // transcription // inferred from electronic annotation /// 0042476 // odontogenesis // non-traceable author statement /// 0045449 // regulation of transcription // non-traceable author statement /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387106_at NM_022693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022693.1 /DB_XREF=gi:12083646 /GEN=Sh3bp4 /FEA=FLmRNA /CNT=9 /TID=Rn.36062.1 /TIER=FL+Stack /STK=8 /UG=Rn.36062 /LL=64634 /DEF=Rattus norvegicus SH3-domain binding protein 4 (Sh3bp4), mRNA. /PROD=SH3-domain binding protein 4 /FL=gb:NM_022693.1 NM_022693 SH3-domain binding protein 4 Sh3bp4 64634 NM_022693 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1387107_at NM_054002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_054002.1 /DB_XREF=gi:16758915 /GEN=Lrf /FEA=FLmRNA /CNT=8 /TID=Rn.11667.1 /TIER=FL+Stack /STK=8 /UG=Rn.11667 /LL=117107 /DEF=Rattus norvegicus leukemialymphoma related factor (Lrf), mRNA. /PROD=leukemialymphoma related factor /FL=gb:NM_054002.1 gb:D88450.1 NM_054002 zinc finger and BTB domain containing 7a Zbtb7a 117107 NM_054002 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045670 // regulation of osteoclast differentiation // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from direct assay /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0035035 // histone acetyltransferase binding // not recorded /// 0035035 // histone acetyltransferase binding // inferred from sequence or structural similarity /// 0035035 // histone acetyltransferase binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387108_at BF281311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281311 /DB_XREF=gi:11212381 /DB_XREF=EST445902 /CLONE=RGIAD05 /FEA=FLmRNA /CNT=43 /TID=Rn.11095.1 /TIER=Stack /STK=20 /UG=Rn.11095 /LL=81650 /UG_GENE=Csnk2b /UG_TITLE=casein kinase II beta subunit /FL=gb:L15619.1 gb:NM_031021.1 BF281311 casein kinase 2, beta polypeptide Csnk2b 81650 NM_001035238 /// NM_031021 0007249 // I-kappaB kinase/NF-kappaB cascade // traceable author statement /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030177 // positive regulation of Wnt receptor signaling pathway // traceable author statement /// 0033211 // adiponectin-mediated signaling pathway // inferred from electronic annotation /// 0033211 // adiponectin-mediated signaling pathway // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005956 // protein kinase CK2 complex // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0019887 // protein kinase regulator activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1387109_at NM_031576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031576.1 /DB_XREF=gi:13928779 /GEN=Por /FEA=FLmRNA /CNT=28 /TID=Rn.11359.1 /TIER=FL+Stack /STK=7 /UG=Rn.11359 /LL=29441 /DEF=Rattus norvegicus P450 (cytochrome) oxidoreductase (Por), mRNA. /PROD=P450 (cytochrome) oxidoreductase /FL=gb:M10068.1 gb:M12516.1 gb:NM_031576.1 NM_031576 P450 (cytochrome) oxidoreductase Por 29441 NM_031576 0008152 // metabolic process // not recorded /// 0032770 // positive regulation of monooxygenase activity // not recorded /// 0044237 // cellular metabolic process // not recorded /// 0046210 // nitric oxide catabolic process // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from direct assay /// 0055114 // oxidation reduction // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0071375 // cellular response to peptide hormone stimulus // inferred from expression pattern /// 0090181 // regulation of cholesterol metabolic process // inferred from mutant phenotype 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003958 // NADPH-hemoprotein reductase activity // inferred from direct assay /// 0003958 // NADPH-hemoprotein reductase activity // inferred from mutant phenotype /// 0003958 // NADPH-hemoprotein reductase activity // not recorded /// 0003958 // NADPH-hemoprotein reductase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0010181 // FMN binding // inferred from mutant phenotype /// 0010181 // FMN binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // not recorded /// 0019899 // enzyme binding // inferred from direct assay /// 0019899 // enzyme binding // inferred from mutant phenotype /// 0019899 // enzyme binding // inferred from physical interaction /// 0050660 // FAD or FADH2 binding // inferred from mutant phenotype /// 0050661 // NADP or NADPH binding // inferred from direct assay /// 0050661 // NADP or NADPH binding // inferred from mutant phenotype 1387110_at NM_012993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012993.1 /DB_XREF=gi:6981289 /GEN=Nrd1 /FEA=FLmRNA /CNT=25 /TID=Rn.2081.1 /TIER=FL+Stack /STK=7 /UG=Rn.2081 /LL=25499 /DEF=Rattus norvegicus N-arginine dibasic convertase 1 (Nrd1), mRNA. /PROD=n-arginine dibasic convertase 1 /FL=gb:NM_012993.1 NM_012993 nardilysin 1 (N-arginine dibasic convertase) Nrd1 25499 NM_012993 0006508 // proteolysis // inferred from electronic annotation /// 0051044 // positive regulation of membrane protein ectodomain proteolysis // not recorded /// 0052548 // regulation of endopeptidase activity // not recorded 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387111_at NM_022297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022297.1 /DB_XREF=gi:11560130 /GEN=Ddah1 /FEA=FLmRNA /CNT=21 /TID=Rn.4241.1 /TIER=FL+Stack /STK=7 /UG=Rn.4241 /LL=64157 /DEF=Rattus norvegicus dimethylarginine dimethylaminohydrolase 1 (Ddah1), mRNA. /PROD=dimethylarginine dimethylaminohydrolase 1 /FL=gb:NM_022297.1 gb:D86041.1 NM_022297 dimethylarginine dimethylaminohydrolase 1 Ddah1 64157 NM_022297 0000052 // citrulline metabolic process // not recorded /// 0000052 // citrulline metabolic process // inferred from sequence or structural similarity /// 0006525 // arginine metabolic process // inferred from direct assay /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from mutant phenotype /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0016403 // dimethylargininase activity // inferred from direct assay /// 0016403 // dimethylargininase activity // not recorded /// 0016403 // dimethylargininase activity // inferred from sequence or structural similarity /// 0016403 // dimethylargininase activity // traceable author statement /// 0016403 // dimethylargininase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016813 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387112_at NM_030990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030990.1 /DB_XREF=gi:13591879 /GEN=Plp1 /FEA=FLmRNA /CNT=25 /TID=Rn.4550.1 /TIER=FL+Stack /STK=7 /UG=Rn.4550 /LL=24943 /DEF=Rattus norvegicus Proteolipid protein (Pelizaeus-Merzbacher disease, spastic paraplegia 2, uncomplicated) (Plp1), mRNA. /PROD=proteolipid protein (Pelizaeus-Merzbacherdisease, spastic paraplegia 2, uncomplicated) /FL=gb:M11185.1 gb:NM_030990.1 NM_030990 proteolipid protein 1 Plp1 24943 NM_030990 0007229 // integrin-mediated signaling pathway // inferred from physical interaction /// 0008366 // axon ensheathment // inferred from expression pattern /// 0008366 // axon ensheathment // not recorded /// 0008366 // axon ensheathment // inferred from electronic annotation /// 0010001 // glial cell differentiation // inferred from mutant phenotype /// 0010628 // positive regulation of gene expression // not recorded /// 0022010 // central nervous system myelination // inferred from electronic annotation /// 0022010 // central nervous system myelination // not recorded /// 0042552 // myelination // inferred from mutant phenotype /// 0042552 // myelination // not recorded /// 0042552 // myelination // inferred from electronic annotation /// 0042759 // long-chain fatty acid biosynthetic process // inferred from electronic annotation /// 0042759 // long-chain fatty acid biosynthetic process // not recorded /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043209 // myelin sheath // not recorded /// 0043209 // myelin sheath // inferred from electronic annotation /// 0043218 // compact myelin // inferred from mutant phenotype 0005198 // structural molecule activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019911 // structural constituent of myelin sheath // inferred from mutant phenotype 1387113_at NM_053335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053335.1 /DB_XREF=gi:16758045 /GEN=Ctbp2 /FEA=FLmRNA /CNT=16 /TID=Rn.13141.1 /TIER=FL+Stack /STK=7 /UG=Rn.13141 /LL=81717 /DEF=Rattus norvegicus C-terminal binding protein 2 (Ctbp2), mRNA. /PROD=C-terminal binding protein 2 /FL=gb:NM_053335.1 gb:AF222712.1 NM_053335 C-terminal binding protein 2 Ctbp2 81717 NM_053335 0006350 // transcription // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0050872 // white fat cell differentiation // not recorded /// 0050872 // white fat cell differentiation // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // not recorded /// 0017053 // transcriptional repressor complex // inferred from sequence or structural similarity /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0003714 // transcription corepressor activity // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation 1387114_at NM_133307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133307.1 /DB_XREF=gi:18959249 /GEN=Prkcd /FEA=FLmRNA /CNT=18 /TID=Rn.20738.1 /TIER=FL+Stack /STK=7 /UG=Rn.20738 /LL=170538 /DEF=Rattus norvegicus protein kinase C, delta (Prkcd), mRNA. /PROD=protein kinase C, delta /FL=gb:NM_133307.1 NM_133307 protein kinase C, delta Prkcd 170538 NM_133307 0001666 // response to hypoxia // inferred from expression pattern /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006917 // induction of apoptosis // inferred from direct assay /// 0006979 // response to oxidative stress // inferred from mutant phenotype /// 0007568 // aging // inferred from expression pattern /// 0009408 // response to heat // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0015810 // aspartate transport // inferred from mutant phenotype /// 0016064 // immunoglobulin mediated immune response // not recorded /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0032613 // interleukin-10 production // not recorded /// 0032615 // interleukin-12 production // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0032963 // collagen metabolic process // inferred from mutant phenotype /// 0042100 // B cell proliferation // not recorded /// 0042149 // cellular response to glucose starvation // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043406 // positive regulation of MAP kinase activity // inferred from mutant phenotype /// 0043410 // positive regulation of MAPKKK cascade // inferred from mutant phenotype /// 0045471 // response to ethanol // inferred from expression pattern /// 0046326 // positive regulation of glucose import // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0004699 // calcium-independent protein kinase C activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008047 // enzyme activator activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1387115_at NM_080899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080899.1 /DB_XREF=gi:18266705 /GEN=Ikbkap /FEA=FLmRNA /CNT=13 /TID=Rn.24043.1 /TIER=FL+Stack /STK=7 /UG=Rn.24043 /DEF=Rattus norvegicus inhibitor of kappa light polypeptide enhancer in B-cells, kinase complex-associated protein (Ikbkap), mRNA. /PROD=inhibitor of kappa light polypeptide enhancer inB-cells, kinase complex-associated protein /FL=gb:AF388201.1 gb:NM_080899.1 NM_080899 inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein Ikbkap 140934 NM_080899 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0007252 // I-kappaB phosphorylation // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0008023 // transcription elongation factor complex // not recorded /// 0008023 // transcription elongation factor complex // inferred from sequence or structural similarity /// 0008023 // transcription elongation factor complex // inferred from electronic annotation /// 0016591 // DNA-directed RNA polymerase II, holoenzyme // inferred from electronic annotation /// 0016591 // DNA-directed RNA polymerase II, holoenzyme // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0004672 // protein kinase activity // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0008607 // phosphorylase kinase regulator activity // not recorded /// 0008607 // phosphorylase kinase regulator activity // inferred from sequence or structural similarity /// 0008607 // phosphorylase kinase regulator activity // inferred from electronic annotation /// 0016944 // RNA polymerase II transcription elongation factor activity // inferred from electronic annotation /// 0016944 // RNA polymerase II transcription elongation factor activity // not recorded 1387116_at NM_012699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012699.2 /DB_XREF=gi:10732860 /GEN=Dnajb9 /FEA=FLmRNA /CNT=21 /TID=Rn.29778.1 /TIER=FL+Stack /STK=7 /UG=Rn.29778 /LL=24908 /DEF=Rattus norvegicus DnaJ (Hsp40) homolog, subfamily B, member 9 (Dnajb9), mRNA. /PROD=DnaJ (Hsp40) homolog, subfamily B, member 9 /FL=gb:NM_012699.2 NM_012699 DnaJ (Hsp40) homolog, subfamily B, member 9 Dnajb9 24908 NM_012699 0006457 // protein folding // inferred from electronic annotation /// 0006916 // anti-apoptosis // traceable author statement /// 0006950 // response to stress // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1387117_at AF013965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF013965.1 /DB_XREF=gi:2317751 /FEA=FLmRNA /CNT=14 /TID=Rn.11361.1 /TIER=FL /STK=1 /UG=Rn.11361 /LL=58821 /UG_GENE=Znf265 /DEF=Rattus norvegicus Zis mRNA, complete cds. /PROD=Zis /FL=gb:AF013967.1 gb:NM_031616.1 gb:AF013965.1 AF013965 zinc finger, RAN-binding domain containing 2 Zranb2 58821 NM_031616 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387118_at NM_013105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013105.1 /DB_XREF=gi:6978748 /GEN=Cyp3a3 /FEA=FLmRNA /CNT=12 /TID=Rn.11291.1 /TIER=FL+Stack /STK=7 /UG=Rn.11291 /LL=25642 /DEF=Rattus norvegicus Cytochrome P450, subfamily IIIA, polypeptide 3 (Cyp3a3), mRNA. /PROD=cytochrome P450, subfamily IIIA, polypeptide 3 /FL=gb:M10161.1 gb:D29967.1 gb:L24207.1 gb:NM_013105.1 NM_013105 cytochrome P450, family 3, subfamily a, polypeptide 23/polypeptide 1 Cyp3a23/3a1 25642 NM_013105 0006706 // steroid catabolic process // not recorded /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008202 // steroid metabolic process // not recorded /// 0009822 // alkaloid catabolic process // not recorded /// 0010038 // response to metal ion // inferred from expression pattern /// 0016098 // monoterpenoid metabolic process // not recorded /// 0017144 // drug metabolic process // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042737 // drug catabolic process // not recorded /// 0042738 // exogenous drug catabolic process // not recorded /// 0046483 // heterocycle metabolic process // not recorded /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded /// 0070989 // oxidative demethylation // not recorded 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from mutant phenotype /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // not recorded /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005496 // steroid binding // not recorded /// 0005506 // iron ion binding // not recorded /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008395 // steroid hydroxylase activity // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0019825 // oxygen binding // not recorded /// 0019899 // enzyme binding // not recorded /// 0020037 // heme binding // inferred from electronic annotation /// 0030343 // vitamin D3 25-hydroxylase activity // not recorded /// 0032451 // demethylase activity // inferred from direct assay /// 0034875 // caffeine oxidase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050649 // testosterone 6-beta-hydroxylase activity // inferred from direct assay /// 0050649 // testosterone 6-beta-hydroxylase activity // not recorded /// 0050649 // testosterone 6-beta-hydroxylase activity // inferred from mutant phenotype /// 0070330 // aromatase activity // inferred from electronic annotation /// 0070576 // vitamin D 24-hydroxylase activity // not recorded 1387119_at AW433971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433971 /DB_XREF=gi:6965278 /DB_XREF=UI-R-BJ0p-afn-g-04-0-UI.s1 /CLONE=UI-R-BJ0p-afn-g-04-0-UI /FEA=FLmRNA /CNT=16 /TID=Rn.6995.1 /TIER=Stack /STK=7 /UG=Rn.6995 /LL=81727 /UG_GENE=Mvk /UG_TITLE=mevalonate kinase /FL=gb:M29472.1 gb:NM_031063.1 AW433971 mevalonate kinase Mvk 81727 NM_031063 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0006720 // isoprenoid metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0008299 // isoprenoid biosynthetic process // inferred from direct assay /// 0008299 // isoprenoid biosynthetic process // not recorded /// 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0016125 // sterol metabolic process // traceable author statement /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0016310 // phosphorylation // inferred from electronic annotation /// 0017148 // negative regulation of translation // inferred from direct assay /// 0019287 // isopentenyl diphosphate biosynthetic process, mevalonate pathway // inferred from direct assay /// 0045540 // regulation of cholesterol biosynthetic process // non-traceable author statement 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from direct assay /// 0004496 // mevalonate kinase activity // inferred from direct assay /// 0004496 // mevalonate kinase activity // not recorded /// 0004496 // mevalonate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1387120_at NM_031595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031595.1 /DB_XREF=gi:13928807 /GEN=Psmc3 /FEA=FLmRNA /CNT=12 /TID=Rn.11173.1 /TIER=FL+Stack /STK=7 /UG=Rn.11173 /LL=29677 /DEF=Rattus norvegicus proteasome (prosome, macropain) 26S subunit, ATPase 3 (Psmc3), mRNA. /PROD=proteasome (prosome, macropain) 26S subunit,ATPase 3 /FL=gb:U77918.1 gb:D83522.1 gb:NM_031595.1 NM_031595 proteasome (prosome, macropain) 26S subunit, ATPase 3 Psmc3 29677 NM_031595 0001824 // blastocyst development // not recorded /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1387121_a_at NM_133583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133583.1 /DB_XREF=gi:19424277 /GEN=Ndrg2 /FEA=FLmRNA /CNT=10 /TID=Rn.3407.1 /TIER=FL+Stack /STK=7 /UG=Rn.3407 /DEF=Rattus norvegicus N-myc downstream-regulated gene 2 (Ndrg2), mRNA. /PROD=N-myc downstream-regulated gene 2 /FL=gb:NM_133583.1 gb:AF334106.1 NM_133583 N-myc downstream regulated gene 2 Ndrg2 171114 NM_133583 0007165 // signal transduction // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0030426 // growth cone // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 1387122_at NM_012760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012760.1 /DB_XREF=gi:6981165 /GEN=Lot1 /FEA=FLmRNA /CNT=17 /TID=Rn.6977.1 /TIER=FL+Stack /STK=7 /UG=Rn.6977 /LL=25157 /DEF=Rattus norvegicus Lost on transformation 1 (Lot1), mRNA. /PROD=lost on transformation 1 /FL=gb:U72620.1 gb:NM_012760.1 NM_012760 pleiomorphic adenoma gene-like 1 Plagl1 25157 NM_012760 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1387123_at NM_012753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012753.1 /DB_XREF=gi:6978730 /GEN=Cyp17 /FEA=FLmRNA /CNT=10 /TID=Rn.10172.1 /TIER=FL+Stack /STK=7 /UG=Rn.10172 /LL=25146 /DEF=Rattus norvegicus Cytochrome P450, subfamily XVII (Cyp17), mRNA. /PROD=cytochrome P450, subfamily XVII /FL=gb:M31681.1 gb:NM_012753.1 gb:M22204.1 NM_012753 cytochrome P450, family 17, subfamily a, polypeptide 1 Cyp17a1 25146 NM_012753 0006694 // steroid biosynthetic process // inferred from mutant phenotype /// 0006694 // steroid biosynthetic process // not recorded /// 0006694 // steroid biosynthetic process // traceable author statement /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006702 // androgen biosynthetic process // traceable author statement /// 0006704 // glucocorticoid biosynthetic process // inferred from electronic annotation /// 0006704 // glucocorticoid biosynthetic process // not recorded /// 0008152 // metabolic process // not recorded /// 0009636 // response to toxin // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004508 // steroid 17-alpha-monooxygenase activity // inferred from direct assay /// 0004508 // steroid 17-alpha-monooxygenase activity // not recorded /// 0004508 // steroid 17-alpha-monooxygenase activity // traceable author statement /// 0004508 // steroid 17-alpha-monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387124_at NM_012590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012590.1 /DB_XREF=gi:6981101 /GEN=Inha /FEA=FLmRNA /CNT=10 /TID=Rn.8831.1 /TIER=FL+Stack /STK=7 /UG=Rn.8831 /LL=24504 /DEF=Rattus norvegicus Inhibin, alpha (Inha), mRNA. /PROD=inhibin, alpha /FL=gb:NM_012590.1 gb:M36453.1 NM_012590 inhibin alpha Inha 24504 NM_012590 0001541 // ovarian follicle development // inferred from mutant phenotype /// 0006917 // induction of apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from sequence or structural similarity /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0008584 // male gonad development // inferred from mutant phenotype /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042541 // hemoglobin biosynthetic process // not recorded /// 0042541 // hemoglobin biosynthetic process // inferred from sequence or structural similarity /// 0042541 // hemoglobin biosynthetic process // inferred from electronic annotation /// 0046882 // negative regulation of follicle-stimulating hormone secretion // inferred from mutant phenotype /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded 0001750 // photoreceptor outer segment // inferred from direct assay /// 0001917 // photoreceptor inner segment // inferred from direct assay /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0034673 // inhibin-betaglycan-ActRII complex // inferred from electronic annotation /// 0034673 // inhibin-betaglycan-ActRII complex // not recorded /// 0043025 // neuronal cell body // inferred from direct assay /// 0043512 // inhibin A complex // inferred from direct assay /// 0043512 // inhibin A complex // not recorded /// 0043512 // inhibin A complex // inferred from electronic annotation 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // inferred from sequence or structural similarity /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005179 // hormone activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0048186 // inhibin beta-A binding // inferred from physical interaction 1387125_at NM_053587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053587.1 /DB_XREF=gi:16758363 /GEN=S100a9 /FEA=FLmRNA /CNT=9 /TID=Rn.6703.1 /TIER=FL+Stack /STK=7 /UG=Rn.6703 /LL=94195 /DEF=Rattus norvegicus S100 calcium-binding protein A9 (calgranulin B) (S100a9), mRNA. /PROD=S100 calcium-binding protein A9 (calgranulin B) /FL=gb:NM_053587.1 gb:L18948.1 NM_053587 S100 calcium binding protein A9 S100a9 94195 NM_053587 0002544 // chronic inflammatory response // inferred from expression pattern /// 0006935 // chemotaxis // inferred from electronic annotation /// 0010043 // response to zinc ion // inferred from expression pattern /// 0030595 // leukocyte chemotaxis // inferred from electronic annotation /// 0030595 // leukocyte chemotaxis // not recorded /// 0031532 // actin cytoskeleton reorganization // inferred from electronic annotation /// 0031532 // actin cytoskeleton reorganization // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0045113 // regulation of integrin biosynthetic process // inferred from electronic annotation /// 0045113 // regulation of integrin biosynthetic process // not recorded /// 0045471 // response to ethanol // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387126_at NM_131907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_131907.1 /DB_XREF=gi:18777796 /GEN=Atp2c1 /FEA=FLmRNA /CNT=14 /TID=Rn.5805.1 /TIER=FL+Stack /STK=7 /UG=Rn.5805 /LL=170699 /DEF=Rattus norvegicus ATPase, Ca++-sequestering (Atp2c1), mRNA. /PROD=ATPase, Ca++-sequestering /FL=gb:NM_131907.1 NM_131907 ATPase, Ca++ transporting, type 2C, member 1 Atp2c1 170699 NM_131907 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from mutant phenotype /// 0006816 // calcium ion transport // not recorded /// 0006816 // calcium ion transport // inferred from sequence or structural similarity /// 0006828 // manganese ion transport // not recorded /// 0006828 // manganese ion transport // inferred from sequence or structural similarity /// 0006874 // cellular calcium ion homeostasis // inferred from mutant phenotype /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation /// 0008544 // epidermis development // not recorded /// 0008544 // epidermis development // inferred from sequence or structural similarity /// 0016339 // calcium-dependent cell-cell adhesion // not recorded /// 0016339 // calcium-dependent cell-cell adhesion // inferred from sequence or structural similarity /// 0030026 // cellular manganese ion homeostasis // not recorded /// 0030026 // cellular manganese ion homeostasis // inferred from sequence or structural similarity /// 0031532 // actin cytoskeleton reorganization // not recorded /// 0031532 // actin cytoskeleton reorganization // inferred from sequence or structural similarity /// 0032468 // Golgi calcium ion homeostasis // not recorded /// 0032468 // Golgi calcium ion homeostasis // inferred from sequence or structural similarity /// 0032472 // Golgi calcium ion transport // not recorded /// 0032472 // Golgi calcium ion transport // inferred from sequence or structural similarity /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from sequence or structural similarity 0000139 // Golgi membrane // not recorded /// 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005802 // trans-Golgi network // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // inferred from sequence or structural similarity /// 0005388 // calcium-transporting ATPase activity // inferred from direct assay /// 0005388 // calcium-transporting ATPase activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // not recorded /// 0005388 // calcium-transporting ATPase activity // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0015410 // manganese-transporting ATPase activity // not recorded /// 0015410 // manganese-transporting ATPase activity // inferred from sequence or structural similarity /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0030145 // manganese ion binding // not recorded /// 0030145 // manganese ion binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1387127_at NM_031351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031351.1 /DB_XREF=gi:13786195 /GEN=Atrn /FEA=FLmRNA /CNT=11 /TID=Rn.53846.1 /TIER=FL+Stack /STK=7 /UG=Rn.53846 /LL=83526 /DEF=Rattus norvegicus attractin (Atrn), mRNA. /PROD=attractin /FL=gb:NM_031351.1 gb:AB038387.1 NM_031351 attractin Atrn 83526 NM_031351 0006954 // inflammatory response // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0043473 // pigmentation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from electronic annotation 1387128_at NM_130779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130779.1 /DB_XREF=gi:18640729 /GEN=Adcy3 /FEA=FLmRNA /CNT=9 /TID=Rn.8799.1 /TIER=FL+Stack /STK=7 /UG=Rn.8799 /LL=64508 /DEF=Rattus norvegicus type III adenylyl cyclase (Adcy3), mRNA. /PROD=type III adenylyl cyclase /FL=gb:M55075.1 gb:NM_130779.1 NM_130779 adenylate cyclase 3 Adcy3 64508 NM_130779 0006171 // cAMP biosynthetic process // inferred from direct assay /// 0006171 // cAMP biosynthetic process // inferred from electronic annotation /// 0007143 // female meiosis // inferred from expression pattern /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007608 // sensory perception of smell // inferred from direct assay /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0034199 // activation of protein kinase A activity // not recorded /// 0050896 // response to stimulus // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004016 // adenylate cyclase activity // inferred from direct assay /// 0004016 // adenylate cyclase activity // not recorded /// 0004016 // adenylate cyclase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008294 // calcium- and calmodulin-responsive adenylate cyclase activity // inferred from direct assay /// 0008294 // calcium- and calmodulin-responsive adenylate cyclase activity // inferred from mutant phenotype /// 0016829 // lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387129_at NM_053435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053435.1 /DB_XREF=gi:16758175 /GEN=Xrcc1 /FEA=FLmRNA /CNT=9 /TID=Rn.13754.1 /TIER=FL+Stack /STK=7 /UG=Rn.13754 /LL=84495 /DEF=Rattus norvegicus x-ray repair cross-complementing group 1 protein (Xrcc1), mRNA. /PROD=x-ray repair cross-complementing group 1protein /FL=gb:AF290895.1 gb:NM_053435.1 NM_053435 X-ray repair complementing defective repair in Chinese hamster cells 1 Xrcc1 84495 NM_053435 0000012 // single strand break repair // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from expression pattern /// 0006281 // DNA repair // inferred from electronic annotation /// 0006284 // base-excision repair // traceable author statement /// 0006974 // response to DNA damage stimulus // inferred from expression pattern /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded 0003684 // damaged DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1387130_at NM_133315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133315.1 /DB_XREF=gi:18959259 /GEN=Slc39a1 /FEA=FLmRNA /CNT=8 /TID=Rn.15324.1 /TIER=FL+Stack /STK=7 /UG=Rn.15324 /LL=170840 /DEF=Rattus norvegicus solute carrier family 39 (iron-regulated transporter), member 1 (Slc39a1), mRNA. /PROD=solute carrier family 39 (iron-regulatedtransporter), member 1 /FL=gb:AF394785.3 gb:NM_133315.1 gb:U76714.1 NM_133315 solute carrier family 39 (iron-regulated transporter), member 1 Slc40a1 170840 NM_133315 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006826 // iron ion transport // non-traceable author statement /// 0006826 // iron ion transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005381 // iron ion transmembrane transporter activity // non-traceable author statement /// 0005381 // iron ion transmembrane transporter activity // inferred from electronic annotation 1387131_at AF193015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF193015.1 /DB_XREF=gi:7861757 /FEA=FLmRNA /CNT=12 /TID=Rn.24382.1 /TIER=FL /STK=3 /UG=Rn.24382 /LL=116459 /UG_GENE=Serpini1 /DEF=Rattus norvegicus neuroserpin mRNA, complete cds. /PROD=neuroserpin /FL=gb:AF193015.1 gb:AF193014.1 gb:NM_053779.1 AF193015 serine (or cysteine) peptidase inhibitor, clade I, member 1 Serpini1 116459 NM_053779 0030155 // regulation of cell adhesion // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from direct assay /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1387132_at NM_012859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012859.1 /DB_XREF=gi:6981163 /GEN=Lipe /FEA=FLmRNA /CNT=9 /TID=Rn.10566.1 /TIER=FL+Stack /STK=7 /UG=Rn.10566 /LL=25330 /DEF=Rattus norvegicus Hormone - sensitive lipase, testicular isoform (Lipe), mRNA. /PROD=hormone - sensitive lipase, testicular isoform /FL=gb:U40001.1 gb:NM_012859.1 NM_012859 lipase, hormone sensitive Lipe 25330 NM_012859 0006361 // transcription initiation from RNA polymerase I promoter // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // traceable author statement /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from expression pattern /// 0007565 // female pregnancy // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // traceable author statement /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0019433 // triglyceride catabolic process // inferred from direct assay /// 0019433 // triglyceride catabolic process // not recorded /// 0019433 // triglyceride catabolic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // inferred from electronic annotation /// 0046340 // diacylglycerol catabolic process // inferred from electronic annotation /// 0046340 // diacylglycerol catabolic process // not recorded 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005811 // lipid particle // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from sequence or structural similarity /// 0005901 // caveola // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003716 // RNA polymerase I transcription termination factor activity // inferred from sequence or structural similarity /// 0004806 // triglyceride lipase activity // inferred from electronic annotation /// 0004806 // triglyceride lipase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016298 // lipase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from direct assay /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation /// 0033878 // hormone-sensitive lipase activity // inferred from electronic annotation /// 0042134 // rRNA primary transcript binding // inferred from sequence or structural similarity /// 0047372 // acylglycerol lipase activity // inferred from direct assay /// 0047372 // acylglycerol lipase activity // inferred from electronic annotation 1387133_at NM_053988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053988.1 /DB_XREF=gi:16758891 /GEN=Calb2 /FEA=FLmRNA /CNT=9 /TID=Rn.10321.1 /TIER=FL+Stack /STK=7 /UG=Rn.10321 /LL=117059 /DEF=Rattus norvegicus calbindin 2 (Calb2), mRNA. /PROD=calbindin 2 /FL=gb:NM_053988.1 NM_053988 calbindin 2 Calb2 117059 NM_053988 0005921 // gap junction // inferred from electronic annotation /// 0005921 // gap junction // not recorded 0005509 // calcium ion binding // inferred from electronic annotation 1387134_at NM_053687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053687.1 /DB_XREF=gi:16758505 /GEN=Slfn4 /FEA=FLmRNA /CNT=8 /TID=Rn.54422.1 /TIER=FL+Stack /STK=7 /UG=Rn.54422 /LL=114247 /DEF=Rattus norvegicus schlafen 4 (Slfn4), mRNA. /PROD=schlafen 4 /FL=gb:AF168795.1 gb:NM_053687.1 NM_053687 schlafen 3 Slfn3 114247 NM_053687 0005524 // ATP binding // inferred from electronic annotation 1387135_at NM_020308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020308.1 /DB_XREF=gi:9945327 /GEN=Adam15 /FEA=FLmRNA /CNT=8 /TID=Rn.28393.1 /TIER=FL+Stack /STK=7 /UG=Rn.28393 /LL=57025 /DEF=Rattus norvegicus a disintegrin and metalloproteinase domain (ADAM) 15 (metargidin) (Adam15), mRNA. /PROD=a disintegrin and metalloprotease domain 15 /FL=gb:NM_020308.1 NM_020308 a disintegrin and metallopeptidase domain 15 (metargidin) Adam15 57025 NM_020308 0001525 // angiogenesis // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // traceable author statement /// 0030574 // collagen catabolic process // inferred from electronic annotation /// 0042246 // tissue regeneration // inferred from expression pattern /// 0060317 // cardiac epithelial to mesenchymal transition // not recorded 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0005912 // adherens junction // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019861 // flagellum // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1387136_at NM_033099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_033099.1 /DB_XREF=gi:14861867 /GEN=Esp /FEA=FLmRNA /CNT=7 /TID=Rn.10048.1 /TIER=FL+Stack /STK=7 /UG=Rn.10048 /LL=64576 /DEF=Rattus norvegicus Osteotesticular phosphatase (Esp), mRNA. /PROD=protein tyrosine phosphatase, receptor type, W /FL=gb:L36884.1 gb:NM_033099.1 NM_033099 protein tyrosine phosphatase, receptor type, V Ptprv 64576 NM_033099 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0031571 // mitotic cell cycle G1/S DNA damage checkpoint // not recorded /// 0046849 // bone remodeling // inferred from expression pattern 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1387137_at NM_012834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012834.1 /DB_XREF=gi:6978678 /GEN=Comp /FEA=FLmRNA /CNT=7 /TID=Rn.10343.1 /TIER=FL+Stack /STK=7 /UG=Rn.10343 /LL=25304 /DEF=Rattus norvegicus Cartilage oligomeric matrix protein (Comp), mRNA. /PROD=cartilage oligomeric matrix protein /FL=gb:NM_012834.1 NM_012834 cartilage oligomeric matrix protein Comp 25304 NM_012834 0003417 // growth plate cartilage development // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from mutant phenotype /// 0060173 // limb development // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from direct assay /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // not recorded 0001968 // fibronectin binding // inferred from mutant phenotype /// 0005201 // extracellular matrix structural constituent // inferred from mutant phenotype /// 0005499 // vitamin D binding // inferred from mutant phenotype /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005518 // collagen binding // not recorded /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded /// 0043395 // heparan sulfate proteoglycan binding // not recorded 1387138_at NM_019162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019162.1 /DB_XREF=gi:9507174 /GEN=Tac2 /FEA=FLmRNA /CNT=7 /TID=Rn.9708.1 /TIER=FL+Stack /STK=7 /UG=Rn.9708 /LL=29191 /DEF=Rattus norvegicus tachykinin 2 (Tac2), mRNA. /PROD=tachykinin 2 /FL=gb:M16410.1 gb:NM_019162.1 NM_019162 tachykinin 2 Tac2 29191 NM_019162 0007217 // tachykinin receptor signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0043278 // response to morphine // inferred from expression pattern /// 0045777 // positive regulation of blood pressure // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation 1387139_at NM_032082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032082.1 /DB_XREF=gi:14091774 /GEN=Hao3 /FEA=FLmRNA /CNT=23 /TID=Rn.10417.1 /TIER=FL+Stack /STK=6 /UG=Rn.10417 /LL=84029 /DEF=Rattus norvegicus hydroxyacid oxidase 3 (medium-chain) (Hao3), mRNA. /PROD=hydroxyacid oxidase 3 (medium-chain) /FL=gb:NM_032082.1 NM_032082 hydroxyacid oxidase 2 (long chain) Hao2 84029 NM_032082 0008152 // metabolic process // inferred from electronic annotation /// 0018924 // mandelate metabolic process // inferred from direct assay /// 0051260 // protein homooligomerization // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003973 // (S)-2-hydroxy-acid oxidase activity // inferred from direct assay /// 0003973 // (S)-2-hydroxy-acid oxidase activity // inferred from electronic annotation /// 0010181 // FMN binding // inferred from direct assay /// 0010181 // FMN binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1387140_at NM_022702 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022702.1 /DB_XREF=gi:12083664 /GEN=Tao2 /FEA=FLmRNA /CNT=16 /TID=Rn.9575.1 /TIER=FL+Stack /STK=6 /UG=Rn.9575 /LL=64666 /DEF=Rattus norvegicus serinethreonine protein kinase TAO2 (Tao2), mRNA. /PROD=serinethreonine protein kinase TAO2 /FL=gb:AF140556.2 gb:NM_022702.1 NM_022702 TAO kinase 2 Taok2 64666 NM_022702 0000186 // activation of MAPKK activity // inferred from electronic annotation /// 0000186 // activation of MAPKK activity // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006950 // response to stress // not recorded /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0046330 // positive regulation of JNK cascade // inferred from electronic annotation /// 0046330 // positive regulation of JNK cascade // not recorded /// 0048041 // focal adhesion assembly // inferred from electronic annotation /// 0048041 // focal adhesion assembly // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387141_at NM_023023 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023023.1 /DB_XREF=gi:12711691 /GEN=Crmp5 /FEA=FLmRNA /CNT=17 /TID=Rn.44871.1 /TIER=FL+Stack /STK=6 /UG=Rn.44871 /LL=65208 /DEF=Rattus norvegicus dihydropyrimidinase-related protein (Crmp5), mRNA. /PROD=dihydropyrimidinase-related protein /FL=gb:NM_023023.1 gb:AB029432.1 NM_023023 dihydropyrimidinase-like 5 Dpysl5 65208 NM_023023 0030182 // neuron differentiation // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation 1387142_at NM_017141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017141.1 /DB_XREF=gi:8393997 /GEN=Polb /FEA=FLmRNA /CNT=14 /TID=Rn.9346.1 /TIER=FL+Stack /STK=6 /UG=Rn.9346 /LL=29240 /DEF=Rattus norvegicus DNA polymerase beta (Polb), mRNA. /PROD=DNA polymerase beta /FL=gb:J02776.1 gb:U38801.1 gb:M13961.1 gb:NM_017141.1 NM_017141 polymerase (DNA directed), beta Polb 29240 NM_017141 0006260 // DNA replication // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006284 // base-excision repair // not recorded /// 0006284 // base-excision repair // inferred from sequence or structural similarity /// 0006284 // base-excision repair // traceable author statement /// 0006284 // base-excision repair // inferred from electronic annotation /// 0006287 // base-excision repair, gap-filling // inferred from electronic annotation /// 0006287 // base-excision repair, gap-filling // not recorded /// 0006290 // pyrimidine dimer repair // inferred from direct assay /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008219 // cell death // not recorded /// 0045471 // response to ethanol // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005874 // microtubule // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // not recorded /// 0003887 // DNA-directed DNA polymerase activity // inferred from sequence or structural similarity /// 0003887 // DNA-directed DNA polymerase activity // traceable author statement /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0016829 // lyase activity // not recorded /// 0016829 // lyase activity // inferred from sequence or structural similarity /// 0016829 // lyase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0046872 // metal ion binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1387143_at NM_053474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053474.1 /DB_XREF=gi:16758225 /GEN=LOC84686 /FEA=FLmRNA /CNT=12 /TID=Rn.6764.1 /TIER=FL+Stack /STK=6 /UG=Rn.6764 /LL=84686 /DEF=Rattus norvegicus spinophilin (LOC84686), mRNA. /PROD=spinophilin /FL=gb:NM_053474.1 gb:AF016252.1 NM_053474 protein phosphatase 1, regulatory subunit 9B Ppp1r9b 84686 NM_053474 0001932 // regulation of protein phosphorylation // inferred from electronic annotation /// 0001932 // regulation of protein phosphorylation // not recorded /// 0007015 // actin filament organization // inferred from electronic annotation /// 0007015 // actin filament organization // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0016358 // dendrite development // inferred from electronic annotation /// 0016358 // dendrite development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005912 // adherens junction // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030175 // filopodium // inferred from electronic annotation /// 0030175 // filopodium // not recorded /// 0030864 // cortical actin cytoskeleton // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1387144_at NM_030994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030994.1 /DB_XREF=gi:13591883 /GEN=Itga1 /FEA=FLmRNA /CNT=10 /TID=Rn.11491.1 /TIER=FL+Stack /STK=6 /UG=Rn.11491 /LL=25118 /DEF=Rattus norvegicus Integrin, alpha 1 (Itga1), mRNA. /PROD=integrin, alpha 1 /FL=gb:NM_030994.1 NM_030994 integrin, alpha 1 Itga1 25118 NM_030994 0000187 // activation of MAPK activity // inferred from mutant phenotype /// 0006936 // muscle contraction // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // not recorded /// 0042311 // vasodilation // inferred from mutant phenotype /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0045123 // cellular extravasation // inferred from electronic annotation /// 0045123 // cellular extravasation // not recorded /// 0048812 // neuron projection morphogenesis // inferred from mutant phenotype /// 0060326 // cell chemotaxis // inferred from mutant phenotype 0001669 // acrosomal vesicle // inferred from direct assay /// 0005624 // membrane fraction // inferred from direct assay /// 0008305 // integrin complex // inferred from mutant phenotype /// 0008305 // integrin complex // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005518 // collagen binding // inferred from mutant phenotype /// 0046982 // protein heterodimerization activity // inferred from mutant phenotype 1387145_at NM_017251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017251.1 /DB_XREF=gi:8393443 /GEN=Gjb1 /FEA=FLmRNA /CNT=10 /TID=Rn.10444.1 /TIER=FL+Stack /STK=6 /UG=Rn.10444 /LL=29584 /DEF=Rattus norvegicus gap junction membrane channel protein beta 1 (Gjb1), mRNA. /PROD=gap junction membrane channel protein beta 1 /FL=gb:NM_017251.1 NM_017251 gap junction protein, beta 1 Gjb1 29584 NM_017251 0007154 // cell communication // traceable author statement /// 0007154 // cell communication // inferred from electronic annotation /// 0015868 // purine ribonucleotide transport // inferred from direct assay /// 0051259 // protein oligomerization // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from mutant phenotype /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005921 // gap junction // inferred from direct assay /// 0005921 // gap junction // inferred from electronic annotation /// 0005922 // connexon complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005243 // gap junction channel activity // inferred from direct assay /// 0005243 // gap junction channel activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387146_a_at X57764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X57764.1 /DB_XREF=gi:56122 /FEA=mRNA /CNT=1 /TID=Rn.11412.2 /TIER=ConsEnd /STK=0 /UG=Rn.11412 /LL=50672 /UG_GENE=Etb /DEF=Rat mRNA for ET-B endothelin receptor. /PROD=ET-B endothelin receptor X57764 endothelin receptor type B Ednrb 50672 NM_017333 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0006885 // regulation of pH // inferred from electronic annotation /// 0006885 // regulation of pH // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from mutant phenotype /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007422 // peripheral nervous system development // inferred from electronic annotation /// 0007422 // peripheral nervous system development // not recorded /// 0007497 // posterior midgut development // inferred from electronic annotation /// 0007497 // posterior midgut development // not recorded /// 0008217 // regulation of blood pressure // inferred from mutant phenotype /// 0008217 // regulation of blood pressure // not recorded /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0014826 // vein smooth muscle contraction // inferred from electronic annotation /// 0014826 // vein smooth muscle contraction // not recorded /// 0030318 // melanocyte differentiation // inferred from direct assay /// 0030318 // melanocyte differentiation // not recorded /// 0030318 // melanocyte differentiation // inferred from electronic annotation /// 0031620 // regulation of fever // inferred from mutant phenotype /// 0042310 // vasoconstriction // inferred from mutant phenotype /// 0042310 // vasoconstriction // not recorded /// 0042310 // vasoconstriction // inferred from electronic annotation /// 0042311 // vasodilation // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // inferred from genetic interaction /// 0043473 // pigmentation // inferred from mutant phenotype /// 0043473 // pigmentation // not recorded /// 0043473 // pigmentation // inferred from electronic annotation /// 0048066 // developmental pigmentation // inferred from electronic annotation /// 0048066 // developmental pigmentation // not recorded /// 0048246 // macrophage chemotaxis // inferred from electronic annotation /// 0048246 // macrophage chemotaxis // not recorded /// 0048265 // response to pain // inferred from mutant phenotype /// 0048484 // enteric nervous system development // inferred from genetic interaction /// 0050678 // regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0051930 // regulation of sensory perception of pain // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay 0001600 // endothelin-B receptor activity // inferred from direct assay /// 0001600 // endothelin-B receptor activity // not recorded /// 0001600 // endothelin-B receptor activity // traceable author statement /// 0001600 // endothelin-B receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004962 // endothelin receptor activity // not recorded /// 0004962 // endothelin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0031702 // type 1 angiotensin receptor binding // inferred from physical interaction 1387147_at NM_133536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133536.1 /DB_XREF=gi:19424193 /GEN=Rab3c /FEA=FLmRNA /CNT=9 /TID=Rn.11037.1 /TIER=FL+Stack /STK=6 /UG=Rn.11037 /LL=171058 /DEF=Rattus norvegicus RAB3C, member RAS oncogene family (Rab3c), mRNA. /PROD=RAB3C, member RAS oncogene family /FL=gb:D78197.1 gb:U54807.1 gb:NM_133536.1 NM_133536 RAB3C, member RAS oncogene family Rab3c 171058 NM_133536 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // traceable author statement /// 0017156 // calcium ion-dependent exocytosis // traceable author statement /// 0017157 // regulation of exocytosis // inferred from electronic annotation /// 0017157 // regulation of exocytosis // not recorded 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0008021 // synaptic vesicle // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1387148_at NM_134386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134386.1 /DB_XREF=gi:19705498 /GEN=pips /FEA=FLmRNA /CNT=8 /TID=Rn.45554.1 /TIER=FL+Stack /STK=6 /UG=Rn.45554 /DEF=Rattus norvegicus Per1 interacting protein (pips), mRNA. /PROD=Per1 interacting protein /FL=gb:AB051807.1 gb:NM_134386.1 NM_134386 G protein-coupled receptor associated sorting protein 1 Gprasp1 171407 NM_134386 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1387149_at NM_030836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030836.1 /DB_XREF=gi:13540637 /GEN=APPILS /FEA=FLmRNA /CNT=7 /TID=Rn.22516.1 /TIER=FL+Stack /STK=6 /UG=Rn.22516 /LL=80897 /DEF=Rattus norvegicus leucyl-specific aminopeptidase PILS (APPILS), mRNA. /PROD=leucyl-specific aminopeptidase PILS /FL=gb:AF148324.1 gb:NM_030836.1 NM_030836 endoplasmic reticulum aminopeptidase 1 Erap1 80897 NM_030836 0006508 // proteolysis // inferred from mutant phenotype /// 0006508 // proteolysis // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0006509 // membrane protein ectodomain proteolysis // inferred from sequence or structural similarity /// 0008152 // metabolic process // not recorded /// 0009617 // response to bacterium // not recorded /// 0019882 // antigen processing and presentation // traceable author statement /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004177 // aminopeptidase activity // inferred from mutant phenotype /// 0004177 // aminopeptidase activity // not recorded /// 0004177 // aminopeptidase activity // inferred from sequence or structural similarity /// 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005138 // interleukin-6 receptor binding // not recorded /// 0005138 // interleukin-6 receptor binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008235 // metalloexopeptidase activity // not recorded /// 0008235 // metalloexopeptidase activity // inferred from sequence or structural similarity /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from mutant phenotype /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387150_at NM_019332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019332.1 /DB_XREF=gi:9506960 /GEN=Pdi1 /FEA=FLmRNA /CNT=7 /TID=Rn.30030.1 /TIER=FL+Stack /STK=6 /UG=Rn.30030 /LL=54282 /DEF=Rattus norvegicus peptidyl arginine deiminase, type I (Pdi1), mRNA. /PROD=peptidyl arginine deiminase, type I /FL=gb:AB010998.1 gb:NM_019332.1 NM_019332 peptidyl arginine deiminase, type I Padi1 54282 NM_019332 0006464 // protein modification process // inferred from electronic annotation /// 0018101 // peptidyl-citrulline biosynthetic process from peptidyl-arginine // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004668 // protein-arginine deiminase activity // inferred from direct assay /// 0004668 // protein-arginine deiminase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387151_at NM_053830 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053830.1 /DB_XREF=gi:16758681 /GEN=Nup107 /FEA=FLmRNA /CNT=7 /TID=Rn.11398.1 /TIER=FL+Stack /STK=6 /UG=Rn.11398 /LL=116555 /DEF=Rattus norvegicus nuclear pore complex protein (Nup107), mRNA. /PROD=nuclear pore complex protein /FL=gb:L31840.1 gb:NM_053830.1 NM_053830 nucleoporin 107 Nup107 116555 NM_053830 0006406 // mRNA export from nucleus // not recorded /// 0006406 // mRNA export from nucleus // inferred from sequence or structural similarity /// 0006406 // mRNA export from nucleus // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // not recorded /// 0000776 // kinetochore // inferred from sequence or structural similarity /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005643 // nuclear pore // not recorded /// 0005643 // nuclear pore // inferred from sequence or structural similarity /// 0005643 // nuclear pore // inferred from electronic annotation /// 0031080 // Nup107-160 complex // not recorded /// 0031080 // Nup107-160 complex // inferred from sequence or structural similarity 0005487 // nucleocytoplasmic transporter activity // not recorded /// 0005487 // nucleocytoplasmic transporter activity // inferred from sequence or structural similarity /// 0005487 // nucleocytoplasmic transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387152_at NM_022186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022186.1 /DB_XREF=gi:11559950 /GEN=Nrbf2 /FEA=FLmRNA /CNT=7 /TID=Rn.44867.1 /TIER=FL+Stack /STK=6 /UG=Rn.44867 /LL=58839 /DEF=Rattus norvegicus nuclear receptor binding factor 2 (Nrbf2), mRNA. /PROD=nuclear receptor binding factor 2 /FL=gb:NM_022186.1 gb:AB024930.1 NM_022186 nuclear receptor binding factor 2 Nrbf2 58839 NM_022186 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // inferred from direct assay 1387153_at NM_017062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017062.1 /DB_XREF=gi:8394188 /GEN=Ril /FEA=FLmRNA /CNT=7 /TID=Rn.34221.1 /TIER=FL+Stack /STK=6 /UG=Rn.34221 /LL=24915 /DEF=Rattus norvegicus Reversion induced LIM gene (Ril), mRNA. /PROD=reversion induced LIM gene /FL=gb:NM_017062.1 NM_017062 reversion induced LIM gene Ril 24915 NM_017062 0030036 // actin cytoskeleton organization // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042805 // actinin binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1387154_at NM_012614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012614.1 /DB_XREF=gi:6981285 /GEN=Npy /FEA=FLmRNA /CNT=7 /TID=Rn.9714.1 /TIER=FL+Stack /STK=6 /UG=Rn.9714 /LL=24604 /DEF=Rattus norvegicus Neuropeptide Y (Npy), mRNA. /PROD=neuropeptide Y /FL=gb:M15880.1 gb:M20373.1 gb:NM_012614.1 NM_012614 neuropeptide Y Npy 24604 NM_012614 0007218 // neuropeptide signaling pathway // inferred from mutant phenotype /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from direct assay /// 0007631 // feeding behavior // non-traceable author statement /// 0008217 // regulation of blood pressure // not recorded /// 0008217 // regulation of blood pressure // traceable author statement /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008343 // adult feeding behavior // inferred from direct assay /// 0032100 // positive regulation of appetite // inferred from direct assay /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0050909 // sensory perception of taste // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay 0001664 // G-protein-coupled receptor binding // not recorded /// 0001664 // G-protein-coupled receptor binding // traceable author statement /// 0001664 // G-protein-coupled receptor binding // inferred from electronic annotation /// 0004983 // neuropeptide Y receptor activity // traceable author statement /// 0005179 // hormone activity // inferred from electronic annotation /// 0031841 // neuropeptide Y receptor binding // inferred from mutant phenotype 1387155_at NM_012746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012746.1 /DB_XREF=gi:6981341 /GEN=Pcsk2 /FEA=FLmRNA /CNT=8 /TID=Rn.9889.1 /TIER=FL+Stack /STK=6 /UG=Rn.9889 /LL=25121 /DEF=Rattus norvegicus Proprotein convertase subtilisinkexin type 2 (Pcsk2), mRNA. /PROD=proprotein convertase subtilisinkexin type 2 /FL=gb:M76706.1 gb:NM_012746.1 gb:M83746.1 NM_012746 proprotein convertase subtilisin/kexin type 2 Pcsk2 25121 NM_012746 0006508 // proteolysis // inferred from mutant phenotype /// 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0016486 // peptide hormone processing // inferred from mutant phenotype /// 0016486 // peptide hormone processing // not recorded /// 0016486 // peptide hormone processing // inferred from electronic annotation /// 0016540 // protein autoprocessing // not recorded /// 0030070 // insulin processing // inferred from electronic annotation /// 0030070 // insulin processing // not recorded /// 0034230 // enkephalin processing // not recorded /// 0034231 // islet amyloid polypeptide processing // inferred from mutant phenotype /// 0051605 // protein maturation by peptide bond cleavage // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0030133 // transport vesicle // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0004175 // endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from mutant phenotype /// 0004252 // serine-type endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1387156_at NM_024391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024391.1 /DB_XREF=gi:13242300 /GEN=Hsd17b2 /FEA=FLmRNA /CNT=8 /TID=Rn.10515.1 /TIER=FL+Stack /STK=6 /UG=Rn.10515 /LL=79243 /DEF=Rattus norvegicus 17-beta hydroxysteroid dehydrogenase type 2 (Hsd17b2), mRNA. /PROD=17-beta hydroxysteroid dehydrogenase type 2 /FL=gb:NM_024391.1 NM_024391 hydroxysteroid (17-beta) dehydrogenase 2 Hsd17b2 79243 NM_024391 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032526 // response to retinoic acid // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004303 // estradiol 17-beta-dehydrogenase activity // inferred from direct assay /// 0004303 // estradiol 17-beta-dehydrogenase activity // not recorded /// 0004303 // estradiol 17-beta-dehydrogenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050327 // testosterone 17-beta-dehydrogenase activity // inferred from electronic annotation /// 0050327 // testosterone 17-beta-dehydrogenase activity // not recorded 1387157_at NM_134393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134393.1 /DB_XREF=gi:19705508 /GEN=ODF3 /FEA=FLmRNA /CNT=7 /TID=Rn.51502.1 /TIER=FL+Stack /STK=6 /UG=Rn.51502 /LL=171414 /DEF=Rattus norvegicus outer dense fiber ODF3 (ODF3), mRNA. /PROD=outer dense fiber ODF3 /FL=gb:NM_134393.1 gb:AF092090.2 NM_134393 polyamine modulated factor 1 binding protein 1 Pmfbp1 171414 NM_134393 0007010 // cytoskeleton organization // non-traceable author statement 0001520 // outer dense fiber // traceable author statement /// 0005737 // cytoplasm // not recorded 1387158_at NM_013183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013183.1 /DB_XREF=gi:6981197 /GEN=Mep1b /FEA=FLmRNA /CNT=7 /TID=Rn.3520.1 /TIER=FL+Stack /STK=6 /UG=Rn.3520 /LL=25727 /DEF=Rattus norvegicus Meprin 1 beta (Mep1b), mRNA. /PROD=meprin 1 beta /FL=gb:NM_013183.1 gb:M88601.1 NM_013183 meprin 1 beta Mep1b 25727 NM_013183 0006508 // proteolysis // non-traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from direct assay /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387159_at NM_053336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053336.1 /DB_XREF=gi:16758047 /GEN=Ager /FEA=FLmRNA /CNT=7 /TID=Rn.9829.1 /TIER=FL+Stack /STK=6 /UG=Rn.9829 /LL=81722 /DEF=Rattus norvegicus advanced glycosylation end product-specific receptor (Ager), mRNA. /PROD=advanced glycosylation end product-specificreceptor /FL=gb:L33413.1 gb:NM_053336.1 NM_053336 advanced glycosylation end product-specific receptor Ager 81722 NM_053336 0006954 // inflammatory response // inferred from electronic annotation /// 0007259 // JAK-STAT cascade // inferred from mutant phenotype /// 0007420 // brain development // inferred from expression pattern /// 0010763 // positive regulation of fibroblast migration // inferred from mutant phenotype /// 0030324 // lung development // inferred from expression pattern /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0031175 // neuron projection development // inferred from genetic interaction /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0031175 // neuron projection development // not recorded /// 0031175 // neuron projection development // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0050727 // regulation of inflammatory response // not recorded /// 0050727 // regulation of inflammatory response // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // inferred from mutant phenotype /// 0050930 // induction of positive chemotaxis // inferred from electronic annotation /// 0050930 // induction of positive chemotaxis // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0055074 // calcium ion homeostasis // inferred from mutant phenotype /// 0055093 // response to hyperoxia // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0009925 // basal plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0048155 // S100 alpha binding // inferred from electronic annotation /// 0048155 // S100 alpha binding // not recorded /// 0050785 // advanced glycation end-product receptor activity // inferred from mutant phenotype 1387160_at NM_022235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022235.1 /DB_XREF=gi:11596856 /GEN=Kcne3 /FEA=FLmRNA /CNT=7 /TID=Rn.44843.1 /TIER=FL+Stack /STK=6 /UG=Rn.44843 /LL=63883 /DEF=Rattus norvegicus mink-related peptide 2 (Kcne3), mRNA. /PROD=mink-related peptide 2 /FL=gb:NM_022235.1 NM_022235 potassium voltage-gated channel, Isk-related subfamily, gene 3 Kcne3 63883 NM_022235 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0043266 // regulation of potassium ion transport // inferred from mutant phenotype 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0015459 // potassium channel regulator activity // inferred from direct assay /// 0015459 // potassium channel regulator activity // traceable author statement 1387161_at NM_032065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032065.1 /DB_XREF=gi:14091747 /GEN=Slc1a6 /FEA=FLmRNA /CNT=6 /TID=Rn.10827.1 /TIER=FL+Stack /STK=6 /UG=Rn.10827 /LL=84012 /DEF=Rattus norvegicus solute carrier family 1 (high affinity aspartateglutamate transporter), member 6 (Slc1a6), mRNA. /PROD=solute carrier family 1 (high affinityaspartateglutamate transporter), member 6 /FL=gb:U89608.1 gb:NM_032065.1 NM_032065 solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6 Slc1a6 84012 NM_032065 0003333 // amino acid transmembrane transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006835 // dicarboxylic acid transport // inferred from electronic annotation /// 0015807 // L-amino acid transport // not recorded /// 0015813 // L-glutamate transport // not recorded /// 0015813 // L-glutamate transport // inferred from electronic annotation /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005313 // L-glutamate transmembrane transporter activity // not recorded /// 0005313 // L-glutamate transmembrane transporter activity // traceable author statement /// 0005313 // L-glutamate transmembrane transporter activity // inferred from electronic annotation /// 0008509 // anion transmembrane transporter activity // inferred from direct assay /// 0015293 // symporter activity // inferred from electronic annotation /// 0017153 // sodium:dicarboxylate symporter activity // inferred from electronic annotation 1387162_at NM_019322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019322.1 /DB_XREF=gi:9506888 /GEN=Mcpt7 /FEA=FLmRNA /CNT=6 /TID=Rn.10699.1 /TIER=FL+Stack /STK=6 /UG=Rn.10699 /LL=54271 /DEF=Rattus norvegicus mast cell protease 7 (Mcpt7), mRNA. /PROD=mast cell protease 7 /FL=gb:NM_019322.1 gb:U67910.1 NM_019322 tryptase alpha/beta 1 Tpsab1 54271 NM_019322 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387163_at NM_013179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013179.1 /DB_XREF=gi:6981015 /GEN=Hcrt /FEA=FLmRNA /CNT=6 /TID=Rn.7628.1 /TIER=FL+Stack /STK=6 /UG=Rn.7628 /LL=25723 /DEF=Rattus norvegicus Hypocretin (orexin) neuropeptide precursor (Hcrt), mRNA. /PROD=hypocretin (orexin) neuropeptide precursor /FL=gb:AF041241.1 gb:NM_013179.1 gb:AF019565.1 NM_013179 hypocretin Hcrt 25723 NM_013179 0001659 // temperature homeostasis // inferred from direct assay /// 0001662 // behavioral fear response // non-traceable author statement /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from mutant phenotype /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007631 // feeding behavior // inferred from electronic annotation /// 0007631 // feeding behavior // non-traceable author statement /// 0008156 // negative regulation of DNA replication // inferred from direct assay /// 0042755 // eating behavior // inferred from direct assay /// 0043267 // negative regulation of potassium ion transport // inferred from direct assay /// 0046928 // regulation of neurotransmitter secretion // inferred from direct assay /// 0051209 // release of sequestered calcium ion into cytosol // inferred from mutant phenotype /// 0051928 // positive regulation of calcium ion transport // inferred from mutant phenotype /// 0051970 // negative regulation of transmission of nerve impulse // inferred from direct assay /// 0051971 // positive regulation of transmission of nerve impulse // inferred from direct assay /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005184 // neuropeptide hormone activity // inferred from direct assay /// 0005184 // neuropeptide hormone activity // traceable author statement /// 0031771 // type 1 hypocretin receptor binding // inferred from direct assay /// 0031772 // type 2 hypocretin receptor binding // inferred from direct assay 1387164_at NM_030854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030854.1 /DB_XREF=gi:13540670 /GEN=Chm-1 /FEA=FLmRNA /CNT=8 /TID=Rn.9900.1 /TIER=FL+Stack /STK=6 /UG=Rn.9900 /LL=81512 /DEF=Rattus norvegicus chondromodulin-1 (Chm-1), mRNA. /PROD=chondromodulin-1 /FL=gb:NM_030854.1 gb:AF051425.1 NM_030854 leukocyte cell derived chemotaxin 1 Lect1 81512 NM_030854 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // not recorded /// 0016525 // negative regulation of angiogenesis // traceable author statement /// 0016525 // negative regulation of angiogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030948 // negative regulation of vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0030948 // negative regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0051216 // cartilage development // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1387165_at NM_019318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019318.1 /DB_XREF=gi:9506878 /GEN=Maf /FEA=FLmRNA /CNT=18 /TID=Rn.10726.1 /TIER=FL /STK=5 /UG=Rn.10726 /LL=54267 /DEF=Rattus norvegicus v-maf musculoaponeurotic fibrosarcoma (avian) oncogene homolog (c-maf) (Maf), mRNA. /PROD=v-maf musculoaponeurotic fibrosarcoma (avian)oncogene homolog ( /FL=gb:U56242.1 gb:NM_019318.1 NM_019318 v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian) Maf 54267 NM_019318 0001816 // cytokine production // inferred from electronic annotation /// 0001816 // cytokine production // not recorded /// 0002088 // lens development in camera-type eye // not recorded /// 0002088 // lens development in camera-type eye // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006351 // transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // non-traceable author statement /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0032330 // regulation of chondrocyte differentiation // inferred from electronic annotation /// 0032330 // regulation of chondrocyte differentiation // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048468 // cell development // inferred from electronic annotation /// 0048468 // cell development // not recorded /// 0070306 // lens fiber cell differentiation // inferred from electronic annotation /// 0070306 // lens fiber cell differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from direct assay 1387166_at NM_021590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021590.1 /DB_XREF=gi:11024667 /GEN=Aipl1 /FEA=FLmRNA /CNT=12 /TID=Rn.39120.1 /TIER=FL /STK=5 /UG=Rn.39120 /LL=59110 /DEF=Rattus norvegicus aryl-hydrocarbon interacting protein-like 1 (Aipl1), mRNA. /PROD=aryl-hydrocarbon interacting protein-like 1 /FL=gb:AF180340.1 gb:NM_021590.1 NM_021590 aryl hydrocarbon receptor-interacting protein-like 1 Aipl1 59110 NM_021590 0001895 // retina homeostasis // inferred from electronic annotation /// 0001895 // retina homeostasis // not recorded /// 0006457 // protein folding // inferred from electronic annotation /// 0007603 // phototransduction, visible light // inferred from electronic annotation /// 0007603 // phototransduction, visible light // not recorded /// 0018343 // protein farnesylation // inferred from electronic annotation /// 0018343 // protein farnesylation // not recorded /// 0030823 // regulation of cGMP metabolic process // inferred from electronic annotation /// 0030823 // regulation of cGMP metabolic process // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded 0001917 // photoreceptor inner segment // inferred from electronic annotation /// 0001917 // photoreceptor inner segment // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0001918 // farnesylated protein binding // inferred from electronic annotation /// 0001918 // farnesylated protein binding // not recorded /// 0005488 // binding // inferred from electronic annotation 1387167_at AB066224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB066224.1 /DB_XREF=gi:18181963 /FEA=FLmRNA /CNT=18 /TID=Rn.9439.1 /TIER=FL /STK=1 /UG=Rn.9439 /LL=25648 /UG_GENE=Slc7a1 /DEF=Rattus norvegicus mRNA for ecotropic retrovirus receptor, complete cds. /PROD=ecotropic retrovirus receptor /FL=gb:U70476.1 gb:D67087.1 gb:AB066224.1 gb:NM_013111.1 AB066224 solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 Slc7a1 25648 NM_013111 0003333 // amino acid transmembrane transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded /// 0006865 // amino acid transport // inferred from electronic annotation /// 0015802 // basic amino acid transport // traceable author statement /// 0015807 // L-amino acid transport // not recorded /// 0015809 // arginine transport // inferred from mutant phenotype /// 0015809 // arginine transport // not recorded /// 0015809 // arginine transport // inferred from electronic annotation /// 0032006 // regulation of TOR signaling cascade // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015181 // arginine transmembrane transporter activity // inferred from direct assay /// 0015181 // arginine transmembrane transporter activity // not recorded /// 0015181 // arginine transmembrane transporter activity // inferred from electronic annotation /// 0015326 // cationic amino acid transmembrane transporter activity // traceable author statement 1387168_at AF136537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF136537.1 /DB_XREF=gi:9886762 /GEN=C1qrp /FEA=FLmRNA /CNT=16 /TID=Rn.4129.1 /TIER=FL /STK=1 /UG=Rn.4129 /LL=84398 /DEF=Rattus norvegicus C1qMBLSPA receptor C1qRp precursor (C1qrp) mRNA, complete cds. /PROD=C1qMBLSPA receptor C1qRp precursor /FL=gb:AF136537.1 gb:NM_053383.1 gb:AF160978.1 AF136537 CD93 molecule Cd93 84398 NM_053383 0007155 // cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0016337 // cell-cell adhesion // inferred from sequence or structural similarity 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded 0001849 // complement component C1q binding // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from electronic annotation 1387169_at NM_053400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053400.1 /DB_XREF=gi:16758125 /GEN=Tle3 /FEA=FLmRNA /CNT=18 /TID=Rn.24106.1 /TIER=FL /STK=5 /UG=Rn.24106 /LL=84424 /DEF=Rattus norvegicus transducin-like enhancer of split 3, homolog of Drosophila (Tle3), mRNA. /PROD=transducin-like enhancer of split 3, homolog ofDrosophila /FL=gb:NM_053400.1 gb:AF186092.1 NM_053400 transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) Tle3 84424 NM_053400 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387170_at NM_053824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053824.1 /DB_XREF=gi:16758673 /GEN=Csnk2a1 /FEA=FLmRNA /CNT=15 /TID=Rn.81042.1 /TIER=FL /STK=5 /UG=Rn.81042 /LL=116549 /DEF=Rattus norvegicus casein kinase II, alpha 1 polypeptide (Csnk2a1), mRNA. /PROD=casein kinase II, alpha 1 polypeptide /FL=gb:L15618.1 gb:NM_053824.1 NM_053824 casein kinase 2, alpha 1 polypeptide Csnk2a1 116549 NM_053824 0001558 // regulation of cell growth // non-traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // non-traceable author statement /// 0046777 // protein autophosphorylation // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005956 // protein kinase CK2 complex // traceable author statement /// 0016580 // Sin3 complex // not recorded /// 0016581 // NuRD complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019888 // protein phosphatase regulator activity // not recorded /// 0047485 // protein N-terminus binding // not recorded 1387171_at NM_017261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017261.1 /DB_XREF=gi:8393474 /GEN=Gria2 /FEA=FLmRNA /CNT=19 /TID=Rn.11364.1 /TIER=FL /STK=5 /UG=Rn.11364 /LL=29627 /DEF=Rattus norvegicus glutamate receptor, ionotropic, AMPA2 (alpha 2) (Gria2), mRNA. /PROD=glutamate receptor, ionotropic, AMPA2 (alpha 2) /FL=gb:M85035.1 gb:M38061.1 gb:NM_017261.1 gb:AF164344.1 NM_017261 glutamate receptor, ionotropic, AMPA 2 Gria2 29627 NM_001083811 /// NM_017261 0001919 // regulation of receptor recycling // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007268 // synaptic transmission // inferred from direct assay /// 0007268 // synaptic transmission // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0010226 // response to lithium ion // inferred from expression pattern /// 0031623 // receptor internalization // inferred from direct assay /// 0034220 // ion transmembrane transport // not recorded /// 0045184 // establishment of protein localization // inferred from mutant phenotype /// 0050806 // positive regulation of synaptic transmission // inferred from mutant phenotype /// 0051966 // regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype /// 0060992 // response to fungicide // inferred from expression pattern 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0008328 // ionotropic glutamate receptor complex // traceable author statement /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0030666 // endocytic vesicle membrane // not recorded /// 0030672 // synaptic vesicle membrane // inferred from direct assay /// 0032279 // asymmetric synapse // inferred from direct assay /// 0032281 // alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex // inferred from electronic annotation /// 0032281 // alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex // not recorded /// 0032839 // dendrite cytoplasm // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0043234 // protein complex // inferred from physical interaction /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from direct assay /// 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // not recorded /// 0004970 // ionotropic glutamate receptor activity // traceable author statement /// 0004971 // alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity // traceable author statement /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // not recorded /// 0005246 // calcium channel regulator activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0030165 // PDZ domain binding // inferred from direct assay /// 0030165 // PDZ domain binding // inferred from physical interaction 1387172_a_at NM_031131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031131.1 /DB_XREF=gi:13592108 /GEN=Tgfb2 /FEA=FLmRNA /CNT=14 /TID=Rn.24539.1 /TIER=FL /STK=5 /UG=Rn.24539 /LL=81809 /DEF=Rattus norvegicus TGF beta 2 protein (Tgfb2), mRNA. /PROD=TGF beta 2 protein /FL=gb:AF153012.2 gb:NM_031131.1 NM_031131 transforming growth factor, beta 2 Tgfb2 81809 NM_031131 0000902 // cell morphogenesis // not recorded /// 0000902 // cell morphogenesis // inferred from sequence or structural similarity /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001502 // cartilage condensation // inferred from electronic annotation /// 0001502 // cartilage condensation // not recorded /// 0001558 // regulation of cell growth // traceable author statement /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001654 // eye development // not recorded /// 0001654 // eye development // inferred from sequence or structural similarity /// 0001666 // response to hypoxia // not recorded /// 0001822 // kidney development // inferred from expression pattern /// 0001837 // epithelial to mesenchymal transition // not recorded /// 0001942 // hair follicle development // not recorded /// 0001942 // hair follicle development // inferred from sequence or structural similarity /// 0001942 // hair follicle development // inferred from electronic annotation /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0001974 // blood vessel remodeling // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006924 // activation-induced cell death of T cells // inferred from electronic annotation /// 0006924 // activation-induced cell death of T cells // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007184 // SMAD protein nuclear translocation // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007435 // salivary gland morphogenesis // not recorded /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from sequence or structural similarity /// 0007507 // heart development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from expression pattern /// 0007565 // female pregnancy // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008219 // cell death // not recorded /// 0008219 // cell death // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0008347 // glial cell migration // not recorded /// 0009314 // response to radiation // inferred from expression pattern /// 0009409 // response to cold // inferred from expression pattern /// 0009611 // response to wounding // not recorded /// 0010002 // cardioblast differentiation // not recorded /// 0010002 // cardioblast differentiation // inferred from sequence or structural similarity /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010634 // positive regulation of epithelial cell migration // not recorded /// 0010693 // negative regulation of alkaline phosphatase activity // not recorded /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0016049 // cell growth // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0022601 // menstrual cycle phase // not recorded /// 0030097 // hemopoiesis // not recorded /// 0030097 // hemopoiesis // inferred from sequence or structural similarity /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030199 // collagen fibril organization // not recorded /// 0030307 // positive regulation of cell growth // not recorded /// 0030307 // positive regulation of cell growth // inferred from sequence or structural similarity /// 0030308 // negative regulation of cell growth // not recorded /// 0030324 // lung development // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030593 // neutrophil chemotaxis // inferred from sequence or structural similarity /// 0030878 // thyroid gland development // inferred from expression pattern /// 0030902 // hindbrain development // inferred from expression pattern /// 0031016 // pancreas development // inferred from expression pattern /// 0031069 // hair follicle morphogenesis // not recorded /// 0031069 // hair follicle morphogenesis // inferred from sequence or structural similarity /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0032147 // activation of protein kinase activity // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032570 // response to progesterone stimulus // not recorded /// 0032874 // positive regulation of stress-activated MAPK cascade // not recorded /// 0032909 // regulation of transforming growth factor-beta2 production // not recorded /// 0033280 // response to vitamin D // inferred from expression pattern /// 0033630 // positive regulation of cell adhesion mediated by integrin // not recorded /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0034616 // response to laminar fluid shear stress // inferred from expression pattern /// 0040007 // growth // inferred from electronic annotation /// 0042060 // wound healing // inferred from expression pattern /// 0042060 // wound healing // inferred from mutant phenotype /// 0042060 // wound healing // inferred from sequence or structural similarity /// 0042127 // regulation of cell proliferation // traceable author statement /// 0042416 // dopamine biosynthetic process // not recorded /// 0042416 // dopamine biosynthetic process // inferred from sequence or structural similarity /// 0042416 // dopamine biosynthetic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042637 // catagen // not recorded /// 0042637 // catagen // inferred from sequence or structural similarity /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0043525 // positive regulation of neuron apoptosis // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from sequence or structural similarity /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0045216 // cell-cell junction organization // not recorded /// 0045726 // positive regulation of integrin biosynthetic process // not recorded /// 0045778 // positive regulation of ossification // not recorded /// 0045787 // positive regulation of cell cycle // not recorded /// 0045787 // positive regulation of cell cycle // inferred from sequence or structural similarity /// 0045787 // positive regulation of cell cycle // inferred from electronic annotation /// 0045823 // positive regulation of heart contraction // not recorded /// 0045823 // positive regulation of heart contraction // inferred from sequence or structural similarity /// 0048103 // somatic stem cell division // not recorded /// 0048103 // somatic stem cell division // inferred from sequence or structural similarity /// 0048103 // somatic stem cell division // inferred from electronic annotation /// 0048565 // digestive tract development // inferred from expression pattern /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0048666 // neuron development // not recorded /// 0048666 // neuron development // inferred from sequence or structural similarity /// 0048666 // neuron development // inferred from electronic annotation /// 0048702 // embryonic neurocranium morphogenesis // inferred from direct assay /// 0048839 // inner ear development // inferred from expression pattern /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050714 // positive regulation of protein secretion // not recorded /// 0050777 // negative regulation of immune response // inferred from direct assay /// 0050778 // positive regulation of immune response // inferred from sequence or structural similarity /// 0051280 // negative regulation of release of sequestered calcium ion into cytosol // inferred from direct assay /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0051795 // positive regulation of catagen // not recorded /// 0051795 // positive regulation of catagen // inferred from sequence or structural similarity /// 0051891 // positive regulation of cardioblast differentiation // not recorded /// 0051891 // positive regulation of cardioblast differentiation // inferred from sequence or structural similarity /// 0060038 // cardiac muscle cell proliferation // not recorded /// 0060038 // cardiac muscle cell proliferation // inferred from sequence or structural similarity /// 0060317 // cardiac epithelial to mesenchymal transition // not recorded /// 0060364 // frontal suture morphogenesis // inferred from expression pattern /// 0060389 // pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0060389 // pathway-restricted SMAD protein phosphorylation // not recorded 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region // inferred from electronic annotation /// 0005604 // basement membrane // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from sequence or structural similarity /// 0030424 // axon // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded /// 0031093 // platelet alpha granule lumen // not recorded /// 0043025 // neuronal cell body // not recorded /// 0043025 // neuronal cell body // inferred from sequence or structural similarity /// 0043025 // neuronal cell body // inferred from electronic annotation 0001540 // beta-amyloid binding // not recorded /// 0001540 // beta-amyloid binding // inferred from sequence or structural similarity /// 0004702 // receptor signaling protein serine/threonine kinase activity // not recorded /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from sequence or structural similarity /// 0005114 // type II transforming growth factor beta receptor binding // not recorded /// 0005160 // transforming growth factor beta receptor binding // not recorded /// 0005160 // transforming growth factor beta receptor binding // inferred from sequence or structural similarity /// 0005160 // transforming growth factor beta receptor binding // traceable author statement /// 0005160 // transforming growth factor beta receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from mutant phenotype 1387173_at NM_013092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013092.1 /DB_XREF=gi:6978666 /GEN=Cma1 /FEA=FLmRNA /CNT=9 /TID=Rn.10182.1 /TIER=FL /STK=5 /UG=Rn.10182 /LL=25627 /DEF=Rattus norvegicus Chymase 1, mast cell (Cma1), mRNA. /PROD=chymase 1, mast cell /FL=gb:D38495.1 gb:NM_013092.1 NM_013092 chymase 1, mast cell Cma1 25627 NM_013092 0006508 // proteolysis // inferred from mutant phenotype /// 0006508 // proteolysis // inferred from electronic annotation /// 0050720 // interleukin-1 beta biosynthetic process // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0031012 // extracellular matrix // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from mutant phenotype /// 0004252 // serine-type endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from mutant phenotype 1387174_a_at AB006007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB006007.1 /DB_XREF=gi:3953618 /FEA=FLmRNA /CNT=18 /TID=Rn.11399.1 /TIER=FL /STK=1 /UG=Rn.11399 /LL=25557 /UG_GENE=Star /DEF=Rattus norvegicus mRNA for steroidogenic acute regulatory protein, complete cds. /PROD=steroidogenic acute regulatory protein /FL=gb:AB001349.1 gb:AF044081.1 gb:NM_031558.1 gb:AB006007.1 AB006007 steroidogenic acute regulatory protein Star 25557 NM_031558 0006694 // steroid biosynthetic process // not recorded /// 0006694 // steroid biosynthetic process // traceable author statement /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006699 // bile acid biosynthetic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008211 // glucocorticoid metabolic process // inferred from electronic annotation /// 0008211 // glucocorticoid metabolic process // not recorded /// 0010288 // response to lead ion // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0044255 // cellular lipid metabolic process // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0048168 // regulation of neuronal synaptic plasticity // inferred from mutant phenotype /// 0050769 // positive regulation of neurogenesis // inferred from mutant phenotype /// 0050810 // regulation of steroid biosynthetic process // inferred from electronic annotation /// 0050810 // regulation of steroid biosynthetic process // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005758 // mitochondrial intermembrane space // inferred from direct assay /// 0005758 // mitochondrial intermembrane space // not recorded /// 0005829 // cytosol // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0008289 // lipid binding // inferred from electronic annotation /// 0015485 // cholesterol binding // inferred from electronic annotation /// 0017127 // cholesterol transporter activity // traceable author statement /// 0017127 // cholesterol transporter activity // inferred from electronic annotation 1387175_a_at NM_053609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053609.1 /DB_XREF=gi:16758401 /GEN=Bat3 /FEA=FLmRNA /CNT=14 /TID=Rn.22304.1 /TIER=FL /STK=5 /UG=Rn.22304 /LL=94342 /DEF=Rattus norvegicus HLA-B associated transcript 3 (Bat3), mRNA. /PROD=HLA-B associated transcript 3 /FL=gb:NM_053609.1 gb:AB018791.1 NM_053609 HLA-B-associated transcript 3 Bat3 94342 NM_001033968 /// NM_053609 0042127 // regulation of cell proliferation // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1387176_at NM_133591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133591.1 /DB_XREF=gi:19424291 /GEN=Rph3al /FEA=FLmRNA /CNT=11 /TID=Rn.10986.1 /TIER=FL /STK=5 /UG=Rn.10986 /LL=171123 /DEF=Rattus norvegicus rabphilin 3A-like (without C2 domains) (Rph3al), mRNA. /PROD=rabphilin 3A-like (without C2 domains) /FL=gb:NM_133591.1 gb:AF022774.1 NM_133591 rabphilin 3A-like (without C2 domains) Rph3al 171123 NM_133591 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0017158 // regulation of calcium ion-dependent exocytosis // inferred from electronic annotation /// 0017158 // regulation of calcium ion-dependent exocytosis // not recorded /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042593 // glucose homeostasis // not recorded /// 0045744 // negative regulation of G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0045744 // negative regulation of G-protein coupled receptor protein signaling pathway // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030658 // transport vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from electronic annotation /// 0030274 // LIM domain binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1387177_at NM_017238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017238.1 /DB_XREF=gi:8394531 /GEN=Vipr2 /FEA=FLmRNA /CNT=10 /TID=Rn.10011.1 /TIER=FL /STK=5 /UG=Rn.10011 /LL=29555 /DEF=Rattus norvegicus vasoactive intestinal peptide receptor 2 (Vipr2), mRNA. /PROD=vasoactive intestinal peptide receptor 2 /FL=gb:U09631.1 gb:NM_017238.1 NM_017238 vasoactive intestinal peptide receptor 2 Vipr2 29555 NM_017238 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007190 // activation of adenylate cyclase activity // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004999 // vasoactive intestinal polypeptide receptor activity // inferred from direct assay /// 0004999 // vasoactive intestinal polypeptide receptor activity // inferred from electronic annotation 1387178_a_at NM_012522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012522.1 /DB_XREF=gi:6978610 /GEN=Cbs /FEA=FLmRNA /CNT=9 /TID=Rn.10200.1 /TIER=FL /STK=5 /UG=Rn.10200 /LL=24250 /DEF=Rattus norvegicus Cystathionine beta synthase (Cbs), mRNA. /PROD=cystathionine beta synthase /FL=gb:M88346.1 gb:D01098.1 gb:NM_012522.1 gb:M88344.1 NM_012522 cystathionine beta synthase Cbs 24250 NM_012522 0001958 // endochondral ossification // inferred from electronic annotation /// 0001958 // endochondral ossification // not recorded /// 0006535 // cysteine biosynthetic process from serine // inferred from electronic annotation /// 0006535 // cysteine biosynthetic process from serine // traceable author statement /// 0006563 // L-serine metabolic process // not recorded /// 0006565 // L-serine catabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0019343 // cysteine biosynthetic process via cystathionine // inferred from electronic annotation /// 0019344 // cysteine biosynthetic process // not recorded /// 0019344 // cysteine biosynthetic process // inferred from electronic annotation /// 0019346 // transsulfuration // inferred from direct assay /// 0019448 // L-cysteine catabolic process // not recorded /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0043418 // homocysteine catabolic process // not recorded /// 0043506 // regulation of JUN kinase activity // inferred from electronic annotation /// 0043506 // regulation of JUN kinase activity // not recorded /// 0050667 // homocysteine metabolic process // inferred from direct assay /// 0050667 // homocysteine metabolic process // not recorded /// 0050667 // homocysteine metabolic process // traceable author statement /// 0050667 // homocysteine metabolic process // inferred from electronic annotation /// 0051593 // response to folic acid // inferred from electronic annotation /// 0051593 // response to folic acid // not recorded /// 0070814 // hydrogen sulfide biosynthetic process // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004122 // cystathionine beta-synthase activity // inferred from direct assay /// 0004122 // cystathionine beta-synthase activity // inferred from electronic annotation /// 0004122 // cystathionine beta-synthase activity // not recorded /// 0004122 // cystathionine beta-synthase activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0016829 // lyase activity // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0020037 // heme binding // not recorded /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // not recorded /// 0030170 // pyridoxal phosphate binding // traceable author statement /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1387179_at NM_017142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017142.1 /DB_XREF=gi:8392851 /GEN=Adcy8 /FEA=FLmRNA /CNT=8 /TID=Rn.10382.1 /TIER=FL /STK=5 /UG=Rn.10382 /LL=29241 /DEF=Rattus norvegicus Adenylyl cyclase 8 (Adcy8), mRNA. /PROD=Adenylyl cyclase 8 /FL=gb:L26986.1 gb:NM_017142.1 NM_017142 adenylate cyclase 8 (brain) Adcy8 29241 NM_017142 0006171 // cAMP biosynthetic process // inferred from mutant phenotype /// 0006171 // cAMP biosynthetic process // not recorded /// 0006171 // cAMP biosynthetic process // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007616 // long-term memory // inferred from electronic annotation /// 0007616 // long-term memory // not recorded /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0019933 // cAMP-mediated signaling // inferred from direct assay /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0034199 // activation of protein kinase A activity // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004016 // adenylate cyclase activity // not recorded /// 0004016 // adenylate cyclase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008294 // calcium- and calmodulin-responsive adenylate cyclase activity // inferred from direct assay /// 0008294 // calcium- and calmodulin-responsive adenylate cyclase activity // inferred from mutant phenotype /// 0016829 // lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387180_at NM_053953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053953.1 /DB_XREF=gi:16758835 /GEN=Il1r2 /FEA=FLmRNA /CNT=8 /TID=Rn.10758.1 /TIER=FL /STK=5 /UG=Rn.10758 /LL=117022 /DEF=Rattus norvegicus interleukin 1 receptor, type II (Il1r2), mRNA. /PROD=interleukin 1 receptor, type II /FL=gb:NM_053953.1 NM_053953 interleukin 1 receptor, type II Il1r2 117022 NM_053953 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004908 // interleukin-1 receptor activity // inferred from electronic annotation /// 0004910 // interleukin-1, Type II, blocking receptor activity // inferred from electronic annotation 1387181_at NM_013172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013172.1 /DB_XREF=gi:6981231 /GEN=Myf6 /FEA=FLmRNA /CNT=8 /TID=Rn.2236.1 /TIER=FL /STK=5 /UG=Rn.2236 /LL=25714 /DEF=Rattus norvegicus Myogenic factor 6 (herculin) (Myf6), mRNA. /PROD=myogenic factor 6 (herculin) /FL=gb:NM_013172.1 gb:M27151.1 NM_013172 myogenic factor 6 Myf6 25714 NM_013172 0001756 // somitogenesis // inferred from electronic annotation /// 0001756 // somitogenesis // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0043403 // skeletal muscle tissue regeneration // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1387182_at NM_057201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057201.1 /DB_XREF=gi:17105355 /GEN=Gpr37 /FEA=FLmRNA /CNT=13 /TID=Rn.28035.1 /TIER=FL /STK=5 /UG=Rn.28035 /LL=117549 /DEF=Rattus norvegicus G protein-coupled receptor 37 (endothelin receptor type B-like) (Gpr37), mRNA. /PROD=G protein-coupled receptor 37 (endothelinreceptor type B-like) /FL=gb:AF087946.1 gb:NM_057201.1 NM_057201 G protein-coupled receptor 37 Gpr37 117549 NM_057201 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1387183_at J02844 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J02844.1 /DB_XREF=gi:203512 /FEA=FLmRNA /CNT=11 /TID=Rn.4896.1 /TIER=FL /STK=1 /UG=Rn.4896 /LL=83842 /UG_GENE=Crot /UG_TITLE=carnitine O-octanoyltransferase /DEF=Rat carnitine octanoyltransferase mRNA, complete cds. /FL=gb:NM_031987.1 gb:U26033.1 gb:J02844.1 J02844 carnitine O-octanoyltransferase Crot 83842 NM_031987 0001579 // medium-chain fatty acid transport // traceable author statement /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0015908 // fatty acid transport // not recorded /// 0015908 // fatty acid transport // inferred from electronic annotation /// 0015909 // long-chain fatty acid transport // traceable author statement /// 0042493 // response to drug // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // not recorded /// 0005777 // peroxisome // inferred from electronic annotation /// 0005782 // peroxisomal matrix // not recorded 0008415 // acyltransferase activity // inferred from electronic annotation /// 0008458 // carnitine O-octanoyltransferase activity // inferred from direct assay /// 0008458 // carnitine O-octanoyltransferase activity // not recorded /// 0008458 // carnitine O-octanoyltransferase activity // traceable author statement /// 0008458 // carnitine O-octanoyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387184_at NM_024355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024355.1 /DB_XREF=gi:13242242 /GEN=Axin2 /FEA=FLmRNA /CNT=9 /TID=Rn.14542.1 /TIER=FL /STK=5 /UG=Rn.14542 /LL=29134 /DEF=Rattus norvegicus axin2 (Axin2), mRNA. /PROD=axin2 /FL=gb:NM_024355.1 gb:AF017757.1 NM_024355 axin 2 Axin2 29134 NM_024355 0001756 // somitogenesis // inferred from electronic annotation /// 0001756 // somitogenesis // not recorded /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0001957 // intramembranous ossification // inferred from electronic annotation /// 0001957 // intramembranous ossification // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008219 // cell death // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0010942 // positive regulation of cell death // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0021764 // amygdala development // not recorded /// 0021766 // hippocampus development // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0030111 // regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030111 // regulation of Wnt receptor signaling pathway // not recorded /// 0032423 // regulation of mismatch repair // not recorded /// 0034613 // cellular protein localization // not recorded /// 0035414 // negative regulation of catenin protein nuclear translocation // not recorded /// 0042476 // odontogenesis // not recorded /// 0043570 // maintenance of DNA repeat elements // not recorded /// 0045668 // negative regulation of osteoblast differentiation // inferred from electronic annotation /// 0045668 // negative regulation of osteoblast differentiation // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from direct assay /// 0048255 // mRNA stabilization // not recorded /// 0070602 // regulation of centromeric sister chromatid cohesion // not recorded /// 0071407 // cellular response to organic cyclic substance // inferred from expression pattern /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded /// 2000054 // negative regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0043234 // protein complex // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from direct assay /// 0019901 // protein kinase binding // inferred from physical interaction 1387185_at NM_053957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053957.1 /DB_XREF=gi:16758841 /GEN=Apbb3 /FEA=FLmRNA /CNT=9 /TID=Rn.30067.1 /TIER=FL /STK=5 /UG=Rn.30067 /LL=117026 /DEF=Rattus norvegicus amyloid beta (A4) precursor protein-binding, family B, member 3 (Apbb3), mRNA. /PROD=amyloid beta (A4) precursor protein-binding,family B, member 3 /FL=gb:NM_053957.1 NM_053957 amyloid beta (A4) precursor protein-binding, family B, member 3 Apbb3 117026 NM_053957 0005737 // cytoplasm // not recorded /// 0015629 // actin cytoskeleton // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1387186_at NM_053458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053458.1 /DB_XREF=gi:16758199 /GEN=Rab9 /FEA=FLmRNA /CNT=9 /TID=Rn.35289.1 /TIER=FL /STK=5 /UG=Rn.35289 /LL=84589 /DEF=Rattus norvegicus RAB9, member RAS oncogene family (Rab9), mRNA. /PROD=RAB9, member RAS oncogene family /FL=gb:NM_053458.1 gb:AF325692.1 NM_053458 RAB9A, member RAS oncogene family Rab9a 84589 NM_053458 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0045453 // bone resorption // traceable author statement 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005770 // late endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0003924 // GTPase activity // traceable author statement /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0005525 // GTP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // not recorded /// 0019003 // GDP binding // inferred from sequence or structural similarity /// 0019003 // GDP binding // inferred from electronic annotation 1387187_a_at U17260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U17260.1 /DB_XREF=gi:596057 /GEN=AT-1 /FEA=FLmRNA /CNT=3 /TID=Rn.32281.2 /TIER=FL /STK=1 /UG=Rn.32281 /LL=116631 /DEF=Rattus norvegicus arylamine N-acetyltransferase-1 (AT-1) mRNA, complete cds. /PROD=arylamine N-acetyltransferase-1 /FL=gb:U01343.1 gb:U17260.1 U17260 N-acetyltransferase 1 (arylamine N-acetyltransferase) Nat1 116631 NM_001037315 /// NM_001037316 /// NM_053853 0001889 // liver development // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0048565 // digestive tract development // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004060 // arylamine N-acetyltransferase activity // inferred from direct assay /// 0004060 // arylamine N-acetyltransferase activity // not recorded /// 0004060 // arylamine N-acetyltransferase activity // inferred from electronic annotation /// 0008080 // N-acetyltransferase activity // non-traceable author statement /// 0008080 // N-acetyltransferase activity // traceable author statement /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016407 // acetyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030371 // translation repressor activity // traceable author statement 1387188_at NM_133554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133554.1 /DB_XREF=gi:19424229 /GEN=Slc17a1 /FEA=FLmRNA /CNT=8 /TID=Rn.11150.1 /TIER=FL /STK=5 /UG=Rn.11150 /LL=171080 /DEF=Rattus norvegicus solute carrier family 17 vesicular glutamate transporter), member 1 (Slc17a1), mRNA. /PROD=solute carrier family 17 vesicular glutamatetransporter), member 1 /FL=gb:NM_133554.1 gb:U28504.1 NM_133554 solute carrier family 17 (sodium phosphate), member 1 Slc17a1 171080 NM_133554 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006817 // phosphate transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005436 // sodium:phosphate symporter activity // traceable author statement /// 0015114 // phosphate transmembrane transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation 1387189_at NM_019230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019230.1 /DB_XREF=gi:9507116 /GEN=Slc22a3 /FEA=FLmRNA /CNT=7 /TID=Rn.24231.1 /TIER=FL /STK=5 /UG=Rn.24231 /LL=29504 /DEF=Rattus norvegicus solute carrier family 22, member 3 (Slc22a3), mRNA. /PROD=solute carrier family 22, member 3 /FL=gb:AF055286.1 gb:NM_019230.1 NM_019230 solute carrier family 22 (extraneuronal monoamine transporter), member 3 Slc22a3 29504 NM_019230 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015695 // organic cation transport // inferred from direct assay /// 0015695 // organic cation transport // not recorded /// 0015695 // organic cation transport // inferred from electronic annotation /// 0015697 // quaternary ammonium group transport // inferred from mutant phenotype /// 0015697 // quaternary ammonium group transport // not recorded /// 0015697 // quaternary ammonium group transport // inferred from electronic annotation /// 0015844 // monoamine transport // inferred from electronic annotation /// 0015844 // monoamine transport // not recorded /// 0015872 // dopamine transport // inferred from direct assay /// 0032098 // regulation of appetite // inferred from electronic annotation /// 0032098 // regulation of appetite // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0051608 // histamine transport // not recorded /// 0051608 // histamine transport // inferred from electronic annotation /// 0051615 // histamine uptake // inferred from electronic annotation /// 0051615 // histamine uptake // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005329 // dopamine transmembrane transporter activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0015075 // ion transmembrane transporter activity // inferred from electronic annotation /// 0015101 // organic cation transmembrane transporter activity // inferred from direct assay /// 0015101 // organic cation transmembrane transporter activity // not recorded /// 0015101 // organic cation transmembrane transporter activity // inferred from electronic annotation /// 0015651 // quaternary ammonium group transmembrane transporter activity // inferred from mutant phenotype /// 0015651 // quaternary ammonium group transmembrane transporter activity // not recorded /// 0015651 // quaternary ammonium group transmembrane transporter activity // inferred from electronic annotation /// 0019534 // toxin transporter activity // inferred from direct assay 1387190_at NM_080787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080787.1 /DB_XREF=gi:18158458 /GEN=Dgka /FEA=FLmRNA /CNT=7 /TID=Rn.1840.1 /TIER=FL /STK=5 /UG=Rn.1840 /DEF=Rattus norvegicus diacylglycerol kinase, alpha (80kD) (Dgka), mRNA. /PROD=diacylglycerol kinase, alpha (80kD) /FL=gb:NM_080787.1 NM_080787 diacylglycerol kinase, alpha Dgka 140866 NM_080787 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004143 // diacylglycerol kinase activity // inferred from electronic annotation /// 0004143 // diacylglycerol kinase activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005543 // phospholipid binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387191_at NM_019125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019125.1 /DB_XREF=gi:9506846 /GEN=LOC54193 /FEA=FLmRNA /CNT=7 /TID=Rn.9862.1 /TIER=FL /STK=5 /UG=Rn.9862 /LL=54193 /DEF=Rattus norvegicus probasin (LOC54193), mRNA. /PROD=probasin /FL=gb:NM_019125.1 gb:M27156.1 NM_019125 probasin Pbsn 54193 NM_019125 0006810 // transport // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005549 // odorant binding // inferred from electronic annotation 1387192_at NM_031751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031751.1 /DB_XREF=gi:13929053 /GEN=Shank1 /FEA=FLmRNA /CNT=12 /TID=Rn.33112.1 /TIER=FL /STK=5 /UG=Rn.33112 /LL=78957 /DEF=Rattus norvegicus Shank1 (Shank1), mRNA. /PROD=Shank1 /FL=gb:AF159046.1 gb:NM_031751.1 gb:AF131951.1 gb:AF102855.2 NM_031751 SH3 and multiple ankyrin repeat domains 1 Shank1 78957 NM_031751 0007016 // cytoskeletal anchoring at plasma membrane // non-traceable author statement 0005622 // intracellular // non-traceable author statement /// 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // non-traceable author statement /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0045211 // postsynaptic membrane // not recorded /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0030159 // receptor signaling complex scaffold activity // inferred from direct assay /// 0031877 // somatostatin receptor binding // inferred from physical interaction /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction 1387193_a_at M27882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M27882.1 /DB_XREF=gi:206464 /FEA=FLmRNA /CNT=11 /TID=Rn.9767.1 /TIER=FL /STK=2 /UG=Rn.9767 /LL=24833 /UG_GENE=Spink1 /UG_TITLE=Serine protease inhibitor, kanzal type 1 Trypsin inhibitor-like protein, pancreatic /DEF=Rat pancreatic secretory trypsin inhibitor type I (PSTI-I) mRNA, complete cds. /FL=gb:M35299.1 gb:NM_012674.1 gb:M22162.1 gb:M27882.1 M27882 serine peptidase inhibitor, Kazal type 3 Spink3 24833 NM_012674 0045861 // negative regulation of proteolysis // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement 0004866 // endopeptidase inhibitor activity // inferred from mutant phenotype /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1387194_at U51013 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U51013.1 /DB_XREF=gi:1435194 /FEA=FLmRNA /CNT=10 /TID=Rn.10539.1 /TIER=FL /STK=5 /UG=Rn.10539 /LL=171097 /UG_GENE=Centa1 /DEF=Rattus norvegicus centaurin alpha mRNA, complete cds. /PROD=centaurin alpha /FL=gb:NM_133567.1 gb:U51013.1 gb:AF123047.1 U51013 ArfGAP with dual PH domains 1 Adap1 171097 NM_133567 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation /// 0043087 // regulation of GTPase activity // not recorded /// 0048016 // inositol phosphate-mediated signaling // non-traceable author statement 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // not recorded /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from direct assay /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008060 // ARF GTPase activator activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1387195_at AB049189 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB049189.1 /DB_XREF=gi:10336526 /FEA=FLmRNA /CNT=9 /TID=Rn.18645.1 /TIER=FL /STK=5 /UG=Rn.18645 /LL=114093 /UG_GENE=St14 /DEF=Rattus norvegicus mRNA for membrane bound arginine specific serine protease, complete cds. /PROD=membrane bound arginine specific serineprotease /FL=gb:AB037898.1 gb:NM_053635.1 gb:AB049189.1 AB049189 suppression of tumorigenicity 14 (colon carcinoma) St14 114093 NM_053635 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0019897 // extrinsic to plasma membrane // inferred from direct assay /// 0019897 // extrinsic to plasma membrane // not recorded /// 0019897 // extrinsic to plasma membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from direct assay /// 0008236 // serine-type peptidase activity // not recorded /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387196_at NM_022249 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022249.1 /DB_XREF=gi:11560054 /GEN=Etle /FEA=FLmRNA /CNT=9 /TID=Rn.52298.1 /TIER=FL /STK=5 /UG=Rn.52298 /LL=64015 /DEF=Rattus norvegicus etoile, Sam68-like protein SLM-2 (Etle), mRNA. /PROD=etoile, Sam68-like protein SLM-2 /FL=gb:AF152547.1 gb:NM_022249.1 NM_022249 KH domain containing, RNA binding, signal transduction associated 3 Khdrbs3 64015 NM_022249 0006350 // transcription // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0003727 // single-stranded RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation 1387197_at NM_031817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031817.1 /DB_XREF=gi:13929163 /GEN=Omd /FEA=FLmRNA /CNT=8 /TID=Rn.30124.1 /TIER=FL /STK=5 /UG=Rn.30124 /LL=83717 /DEF=Rattus norvegicus osteomodulin (osteoadherin) (Omd), mRNA. /PROD=osteomodulin (osteoadherin) /FL=gb:NM_031817.1 gb:AF104362.1 NM_031817 osteomodulin Omd 83717 NM_031817 0007155 // cell adhesion // inferred from electronic annotation /// 0030500 // regulation of bone mineralization // non-traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1387198_at NM_019311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019311.1 /DB_XREF=gi:9506812 /GEN=Inpp5d /FEA=FLmRNA /CNT=7 /TID=Rn.10659.1 /TIER=FL /STK=5 /UG=Rn.10659 /LL=54259 /DEF=Rattus norvegicus Inositol polyphosphate-5-phosphatase (Inpp5d), mRNA. /PROD=Inositol polyphosphate-5-phosphatase /FL=gb:NM_019311.1 gb:U55192.1 NM_019311 inositol polyphosphate-5-phosphatase D Inpp5d 54259 NM_019311 0006915 // apoptosis // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008340 // determination of adult lifespan // inferred from electronic annotation /// 0008340 // determination of adult lifespan // not recorded /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0009968 // negative regulation of signal transduction // not recorded /// 0016064 // immunoglobulin mediated immune response // inferred from electronic annotation /// 0016064 // immunoglobulin mediated immune response // not recorded /// 0016311 // dephosphorylation // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // not recorded /// 0030853 // negative regulation of granulocyte differentiation // not recorded /// 0030853 // negative regulation of granulocyte differentiation // inferred from electronic annotation /// 0030889 // negative regulation of B cell proliferation // inferred from electronic annotation /// 0030889 // negative regulation of B cell proliferation // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0045409 // negative regulation of interleukin-6 biosynthetic process // inferred from electronic annotation /// 0045409 // negative regulation of interleukin-6 biosynthetic process // not recorded /// 0045579 // positive regulation of B cell differentiation // inferred from electronic annotation /// 0045579 // positive regulation of B cell differentiation // not recorded /// 0045621 // positive regulation of lymphocyte differentiation // not recorded /// 0045621 // positive regulation of lymphocyte differentiation // inferred from electronic annotation /// 0045648 // positive regulation of erythrocyte differentiation // inferred from electronic annotation /// 0045648 // positive regulation of erythrocyte differentiation // not recorded /// 0045656 // negative regulation of monocyte differentiation // inferred from electronic annotation /// 0045656 // negative regulation of monocyte differentiation // not recorded /// 0045659 // negative regulation of neutrophil differentiation // inferred from electronic annotation /// 0045659 // negative regulation of neutrophil differentiation // not recorded /// 0045671 // negative regulation of osteoclast differentiation // inferred from electronic annotation /// 0045671 // negative regulation of osteoclast differentiation // not recorded /// 0045779 // negative regulation of bone resorption // inferred from electronic annotation /// 0045779 // negative regulation of bone resorption // not recorded /// 0050777 // negative regulation of immune response // inferred from electronic annotation /// 0050777 // negative regulation of immune response // not recorded /// 0050869 // negative regulation of B cell activation // not recorded /// 0050869 // negative regulation of B cell activation // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0004445 // inositol-polyphosphate 5-phosphatase activity // inferred from electronic annotation /// 0004445 // inositol-polyphosphate 5-phosphatase activity // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded /// 0030487 // inositol-4,5-bisphosphate 5-phosphatase activity // inferred from direct assay /// 0034594 // phosphatidylinositol trisphosphate phosphatase activity // inferred from electronic annotation /// 0034594 // phosphatidylinositol trisphosphate phosphatase activity // not recorded /// 0051425 // PTB domain binding // inferred from electronic annotation /// 0051425 // PTB domain binding // not recorded 1387199_a_at NM_023957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023957.1 /DB_XREF=gi:13027401 /GEN=Arhgef9 /FEA=FLmRNA /CNT=7 /TID=Rn.64487.1 /TIER=FL /STK=5 /UG=Rn.64487 /LL=66013 /DEF=Rattus norvegicus collybistin I (Arhgef9), mRNA. /PROD=collybistin I /FL=gb:NM_023957.1 NM_023957 Cdc42 guanine nucleotide exchange factor (GEF) 9 Arhgef9 66013 NM_023957 0001941 // postsynaptic membrane organization // inferred from mutant phenotype /// 0006915 // apoptosis // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction 1387200_at NM_021770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021770.2 /DB_XREF=gi:20544179 /GEN=Olig1 /FEA=FLmRNA /CNT=7 /TID=Rn.45339.1 /TIER=FL /STK=5 /UG=Rn.45339 /LL=60394 /DEF=Rattus norvegicus oligodendrocyte transcription factor 1 (Olig1), mRNA. /PROD=oligodendrocyte transcription factor 1 /FL=gb:NM_021770.2 gb:AF151367.1 NM_021770 oligodendrocyte transcription factor 1 Olig1 60394 NM_021770 0006350 // transcription // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1387201_at NM_053588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053588.1 /DB_XREF=gi:16758365 /GEN=Trif-pending /FEA=FLmRNA /CNT=7 /TID=Rn.6814.1 /TIER=FL /STK=5 /UG=Rn.6814 /LL=94196 /DEF=Rattus norvegicus Trif gene (Trif-pending), mRNA. /PROD=Trif gene /FL=gb:AF315468.1 gb:NM_053588.1 NM_053588 ring finger protein 138 Rnf138 94196 NM_053588 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1387202_at NM_012967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012967.1 /DB_XREF=gi:6981067 /GEN=Icam1 /FEA=FLmRNA /CNT=6 /TID=Rn.12.1 /TIER=FL /STK=5 /UG=Rn.12 /LL=25464 /DEF=Rattus norvegicus Intercellular adhesion molecule 1 (Icam1), mRNA. /PROD=intercellular adhesion molecule 1 /FL=gb:NM_012967.1 NM_012967 intercellular adhesion molecule 1 Icam1 25464 NM_012967 0001541 // ovarian follicle development // inferred from expression pattern /// 0001666 // response to hypoxia // inferred from expression pattern /// 0002291 // T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell // inferred from electronic annotation /// 0002291 // T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell // not recorded /// 0002457 // T cell antigen processing and presentation // inferred from electronic annotation /// 0002457 // T cell antigen processing and presentation // not recorded /// 0002693 // positive regulation of cellular extravasation // inferred from electronic annotation /// 0002693 // positive regulation of cellular extravasation // not recorded /// 0007155 // cell adhesion // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007159 // leukocyte cell-cell adhesion // inferred from electronic annotation /// 0007159 // leukocyte cell-cell adhesion // not recorded /// 0007569 // cell aging // inferred from expression pattern /// 0008360 // regulation of cell shape // inferred from mutant phenotype /// 0010212 // response to ionizing radiation // inferred from expression pattern /// 0010477 // response to sulfur dioxide // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016337 // cell-cell adhesion // inferred from direct assay /// 0016337 // cell-cell adhesion // inferred from mutant phenotype /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0022614 // membrane to membrane docking // inferred from electronic annotation /// 0022614 // membrane to membrane docking // not recorded /// 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0030155 // regulation of cell adhesion // not recorded /// 0031669 // cellular response to nutrient levels // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033627 // cell adhesion mediated by integrin // inferred from electronic annotation /// 0033627 // cell adhesion mediated by integrin // not recorded /// 0034698 // response to gonadotropin stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from mutant phenotype /// 0045471 // response to ethanol // inferred from expression pattern /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype /// 0046688 // response to copper ion // inferred from expression pattern /// 0046813 // virion attachment, binding of host cell surface receptor // inferred from electronic annotation /// 0046813 // virion attachment, binding of host cell surface receptor // not recorded /// 0050900 // leukocyte migration // not recorded /// 0050900 // leukocyte migration // traceable author statement /// 0050900 // leukocyte migration // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0051856 // adhesion to symbiont // inferred from electronic annotation /// 0051856 // adhesion to symbiont // not recorded /// 0051926 // negative regulation of calcium ion transport // inferred from direct assay /// 0071222 // cellular response to lipopolysaccharide // inferred from expression pattern /// 0071310 // cellular response to organic substance // inferred from expression pattern /// 0071312 // cellular response to alkaloid // inferred from expression pattern /// 0071333 // cellular response to glucose stimulus // inferred from expression pattern /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from expression pattern 0001772 // immunological synapse // inferred from electronic annotation /// 0001772 // immunological synapse // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from expression pattern /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005178 // integrin binding // inferred from mutant phenotype /// 0005178 // integrin binding // not recorded /// 0005178 // integrin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from expression pattern /// 0032403 // protein complex binding // inferred from physical interaction /// 0043498 // cell surface binding // inferred from mutant phenotype 1387203_at NM_013120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013120.1 /DB_XREF=gi:6978883 /GEN=Gckr /FEA=FLmRNA /CNT=6 /TID=Rn.7863.1 /TIER=FL /STK=5 /UG=Rn.7863 /LL=25658 /DEF=Rattus norvegicus Glucokinase regulatory protein (Gckr), mRNA. /PROD=glucokinase regulatory protein /FL=gb:NM_013120.1 NM_013120 glucokinase (hexokinase 4) regulator Gckr 25658 NM_013120 0000060 // protein import into nucleus, translocation // inferred from direct assay /// 0000060 // protein import into nucleus, translocation // not recorded /// 0001678 // cellular glucose homeostasis // not recorded /// 0006006 // glucose metabolic process // traceable author statement /// 0009750 // response to fructose stimulus // inferred from direct assay /// 0033132 // negative regulation of glucokinase activity // inferred from direct assay /// 0043086 // negative regulation of catalytic activity // inferred from direct assay /// 0051594 // detection of glucose // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded 0004857 // enzyme inhibitor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from direct assay /// 0005529 // sugar binding // inferred from mutant phenotype /// 0019899 // enzyme binding // inferred from mutant phenotype /// 0019899 // enzyme binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction 1387204_at NM_021682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021682.1 /DB_XREF=gi:11067408 /GEN=LOC59318 /FEA=FLmRNA /CNT=6 /TID=Rn.42884.1 /TIER=FL /STK=5 /UG=Rn.42884 /LL=59318 /DEF=Rattus norvegicus Kilon (LOC59318), mRNA. /PROD=Kilon /FL=gb:NM_021682.1 gb:AB017139.1 NM_021682 neuronal growth regulator 1 Negr1 59318 NM_021682 0007155 // cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay 1387205_at NM_022921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022921.1 /DB_XREF=gi:12621071 /GEN=RT1-M3 /FEA=FLmRNA /CNT=6 /TID=Rn.54483.1 /TIER=FL /STK=5 /UG=Rn.54483 /LL=24747 /DEF=Rattus norvegicus RT1 class Ib gene, locus M3 (RT1-M3), mRNA. /PROD=RT1 class Ib gene RT1-M3 /FL=gb:U16025.1 gb:NM_022921.1 NM_022921 RT1 class Ib, locus M3, gene 1 RT1-M3-1 24747 NM_022921 0001916 // positive regulation of T cell mediated cytotoxicity // not recorded /// 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0002237 // response to molecule of bacterial origin // not recorded /// 0002237 // response to molecule of bacterial origin // inferred from electronic annotation /// 0002287 // alpha-beta T cell activation involved in immune response // not recorded /// 0002287 // alpha-beta T cell activation involved in immune response // inferred from electronic annotation /// 0002476 // antigen processing and presentation of endogenous peptide antigen via MHC class Ib // not recorded /// 0002476 // antigen processing and presentation of endogenous peptide antigen via MHC class Ib // inferred from electronic annotation /// 0002477 // antigen processing and presentation of exogenous peptide antigen via MHC class Ib // not recorded /// 0002477 // antigen processing and presentation of exogenous peptide antigen via MHC class Ib // inferred from electronic annotation /// 0002481 // antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent // not recorded /// 0002481 // antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0032729 // positive regulation of interferon-gamma production // inferred from electronic annotation /// 0042742 // defense response to bacterium // not recorded /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0045429 // positive regulation of nitric oxide biosynthetic process // not recorded /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // not recorded /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // inferred from electronic annotation 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032398 // MHC class Ib protein complex // not recorded /// 0032398 // MHC class Ib protein complex // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 0042605 // peptide antigen binding // not recorded /// 0042605 // peptide antigen binding // inferred from electronic annotation 1387206_at NM_031740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031740.1 /DB_XREF=gi:13929041 /GEN=B4galt6 /FEA=FLmRNA /CNT=14 /TID=Rn.21126.1 /TIER=FL /STK=5 /UG=Rn.21126 /LL=65196 /DEF=Rattus norvegicus UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6 (B4galt6), mRNA. /PROD=UDP-Gal:betaGlcNAc beta1,4-galactosyltransferase, polypeptide 6 /FL=gb:AF048687.1 gb:NM_031740.1 NM_031740 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6 B4galt6 65196 NM_031740 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006688 // glycosphingolipid biosynthetic process // traceable author statement 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0008489 // UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387207_at M83092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M83092.1 /DB_XREF=gi:204250 /FEA=FLmRNA /CNT=10 /TID=Rn.10851.1 /TIER=FL /STK=1 /UG=Rn.10851 /LL=50563 /UG_GENE=Gja5 /DEF=Rat connexin 40 mRNA, complete cds. /PROD=connexin 40 /FL=gb:AF021806.1 gb:NM_019280.1 gb:M83092.1 M83092 gap junction protein, alpha 5 Gja5 50563 NM_019280 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0007154 // cell communication // inferred from electronic annotation /// 0007267 // cell-cell signaling // inferred from direct assay /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0035050 // embryonic heart tube development // inferred from electronic annotation /// 0035050 // embryonic heart tube development // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005921 // gap junction // inferred from electronic annotation /// 0005922 // connexon complex // inferred from direct assay /// 0005922 // connexon complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005243 // gap junction channel activity // inferred from direct assay 1387208_at NM_033359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_033359.2 /DB_XREF=gi:19923710 /GEN=Ngb /FEA=FLmRNA /CNT=8 /TID=Rn.64645.1 /TIER=FL /STK=5 /UG=Rn.64645 /LL=85382 /DEF=Rattus norvegicus neuroglobin (Ngb), mRNA. /PROD=neuroglobin /FL=gb:AY066001.1 gb:NM_033359.2 gb:AF333245.1 gb:AF334379.1 NM_033359 neuroglobin Ngb 85382 NM_033359 0006810 // transport // inferred from electronic annotation /// 0015671 // oxygen transport // inferred from electronic annotation /// 0015671 // oxygen transport // not recorded 0005344 // oxygen transporter activity // not recorded /// 0005344 // oxygen transporter activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0019825 // oxygen binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387209_at NM_053571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053571.1 /DB_XREF=gi:16758343 /GEN=Rgpr /FEA=FLmRNA /CNT=7 /TID=Rn.21873.1 /TIER=FL /STK=5 /UG=Rn.21873 /LL=89868 /DEF=Rattus norvegicus regucalcin gene promotor region related protein (Rgpr), mRNA. /PROD=regucalcin gene promotor region related protein /FL=gb:NM_053571.1 gb:AB060653.1 NM_053571 SEC16 homolog B (S. cerevisiae) Sec16b 89868 NM_053571 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1387210_at NM_019621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019621.1 /DB_XREF=gi:9665226 /GEN=Dlgh4 /FEA=FLmRNA /CNT=7 /TID=Rn.9765.1 /TIER=FL /STK=5 /UG=Rn.9765 /LL=29495 /DEF=Rattus norvegicus discs, large homolog 4 (Drosophila) (Dlgh4), mRNA. /PROD=discs, large homolog 4 (Drosophila) /FL=gb:M96853.1 gb:NM_019621.1 NM_019621 discs, large homolog 4 (Drosophila) Dlg4 29495 NM_019621 0006950 // response to stress // non-traceable author statement /// 0016188 // synaptic vesicle maturation // inferred from electronic annotation /// 0016188 // synaptic vesicle maturation // not recorded /// 0045161 // neuronal ion channel clustering // traceable author statement /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0014069 // postsynaptic density // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0019717 // synaptosome // not recorded /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // not recorded /// 0030863 // cortical cytoskeleton // not recorded /// 0031234 // extrinsic to internal side of plasma membrane // inferred from electronic annotation /// 0031234 // extrinsic to internal side of plasma membrane // not recorded /// 0032281 // alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex // inferred from electronic annotation /// 0032281 // alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex // not recorded /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0045211 // postsynaptic membrane // not recorded /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // not recorded /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction 1387211_at NM_057109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057109.1 /DB_XREF=gi:16923955 /GEN=Barhl2 /FEA=FLmRNA /CNT=6 /TID=Rn.53445.1 /TIER=FL /STK=5 /UG=Rn.53445 /LL=117232 /DEF=Rattus norvegicus BarH-like 2 (Drosophila) (Barhl2), mRNA. /PROD=BarH (Drosophila)-like 1 /FL=gb:AB043981.1 gb:NM_057109.1 NM_057109 BarH-like homeobox 1 Barhl1 117232 NM_057109 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0030901 // midbrain development // inferred from electronic annotation /// 0030901 // midbrain development // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1387212_at NM_012863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012863.1 /DB_XREF=gi:6981205 /GEN=Mist1 /FEA=FLmRNA /CNT=5 /TID=Rn.9897.1 /TIER=FL /STK=5 /UG=Rn.9897 /LL=25334 /DEF=Rattus norvegicus Basic helix-loop-helix transcription factor (bHlH) (Mist1), mRNA. /PROD=basic helix-loop-helix transcription factor(bHlH) /FL=gb:NM_012863.1 gb:U58279.1 NM_012863 basic helix-loop-helix family, member a15 Bhlha15 25334 NM_012863 0006350 // transcription // inferred from electronic annotation /// 0006851 // mitochondrial calcium ion transport // inferred from electronic annotation /// 0006851 // mitochondrial calcium ion transport // not recorded /// 0007030 // Golgi organization // inferred from electronic annotation /// 0007030 // Golgi organization // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0019722 // calcium-mediated signaling // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // not recorded /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042593 // glucose homeostasis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048312 // intracellular distribution of mitochondria // inferred from electronic annotation /// 0048312 // intracellular distribution of mitochondria // not recorded /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1387213_at NM_133559 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133559.1 /DB_XREF=gi:19424239 /GEN=Pcsk4 /FEA=FLmRNA /CNT=5 /TID=Rn.2899.1 /TIER=FL /STK=5 /UG=Rn.2899 /DEF=Rattus norvegicus proprotein convertase subtilisinkexin type 4 (Pcsk4), mRNA. /PROD=proprotein convertase subtilisinkexin type 4 /FL=gb:NM_133559.1 NM_133559 proprotein convertase subtilisin/kexin type 4 Pcsk4 171085 NM_133559 0006508 // proteolysis // inferred from electronic annotation /// 0007339 // binding of sperm to zona pellucida // not recorded /// 0007340 // acrosome reaction // not recorded /// 0009566 // fertilization // not recorded /// 0048240 // sperm capacitation // not recorded 0002080 // acrosomal membrane // not recorded 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387214_at NM_031565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031565.1 /DB_XREF=gi:13928767 /GEN=Ces1 /FEA=FLmRNA /CNT=5 /TID=Rn.82692.1 /TIER=FL /STK=5 /UG=Rn.82692 /LL=29225 /DEF=Rattus norvegicus carboxylesterase 1 (Ces1), mRNA. /PROD=carboxylesterase 1 /FL=gb:NM_031565.1 NM_031565 esterase 22 Es22 29225 NM_031565 0008152 // metabolic process // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 0004091 // carboxylesterase activity // not recorded /// 0004091 // carboxylesterase activity // traceable author statement /// 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0016290 // palmitoyl-CoA hydrolase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation 1387215_at NM_030656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030656.1 /DB_XREF=gi:13470095 /GEN=Agxt /FEA=FLmRNA /CNT=5 /TID=Rn.9931.1 /TIER=FL /STK=5 /UG=Rn.9931 /LL=24792 /DEF=Rattus norvegicus Alanine-glyoxylate aminotransferase (Serine-pyruvate aminotransferase) (Agxt), mRNA. /PROD=serine-pyruvate aminotransferase /FL=gb:NM_030656.1 gb:M35270.1 NM_030656 alanine-glyoxylate aminotransferase Agxt 24792 NM_030656 0006625 // protein targeting to peroxisome // inferred from electronic annotation /// 0006625 // protein targeting to peroxisome // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0019265 // glycine biosynthetic process, by transamination of glyoxylate // inferred from direct assay /// 0042866 // pyruvate biosynthetic process // inferred from direct assay /// 0046487 // glyoxylate metabolic process // inferred from electronic annotation /// 0046487 // glyoxylate metabolic process // not recorded /// 0046724 // oxalic acid secretion // inferred from electronic annotation /// 0046724 // oxalic acid secretion // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from direct assay /// 0051591 // response to cAMP // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // not recorded /// 0005777 // peroxisome // traceable author statement /// 0005777 // peroxisome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004760 // serine-pyruvate transaminase activity // inferred from direct assay /// 0004760 // serine-pyruvate transaminase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008453 // alanine-glyoxylate transaminase activity // inferred from direct assay /// 0008453 // alanine-glyoxylate transaminase activity // inferred from mutant phenotype /// 0008453 // alanine-glyoxylate transaminase activity // not recorded /// 0008453 // alanine-glyoxylate transaminase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1387216_at NM_017266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017266.1 /DB_XREF=gi:8393708 /GEN=Ldhc /FEA=FLmRNA /CNT=5 /TID=Rn.9984.1 /TIER=FL /STK=5 /UG=Rn.9984 /LL=29634 /DEF=Rattus norvegicus lactate dehydrogenase 3, C chain, sperm specific (Ldhc), mRNA. /PROD=lactate dehydrogenase 3, C chain, spermspecific /FL=gb:NM_017266.1 gb:U07177.1 NM_017266 lactate dehydrogenase C Ldhc 29634 NM_017266 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006096 // glycolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0044262 // cellular carbohydrate metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004459 // L-lactate dehydrogenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation 1387217_a_at NM_031577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031577.1 /DB_XREF=gi:13928781 /GEN=Ghrh /FEA=FLmRNA /CNT=5 /TID=Rn.10693.1 /TIER=FL /STK=5 /UG=Rn.10693 /LL=29446 /DEF=Rattus norvegicus growth hormone releasing hormone (Ghrh), mRNA. /PROD=growth hormone releasing hormone /FL=gb:M73486.1 gb:NM_031577.1 NM_031577 growth hormone releasing hormone Ghrh 29446 NM_031577 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from direct assay /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from direct assay /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0010667 // negative regulation of cardiac muscle cell apoptosis // inferred from mutant phenotype /// 0019933 // cAMP-mediated signaling // not recorded /// 0019933 // cAMP-mediated signaling // inferred from electronic annotation /// 0021984 // adenohypophysis development // not recorded /// 0021984 // adenohypophysis development // traceable author statement /// 0021984 // adenohypophysis development // inferred from electronic annotation /// 0030252 // growth hormone secretion // inferred from direct assay /// 0030252 // growth hormone secretion // inferred from mutant phenotype /// 0030252 // growth hormone secretion // not recorded /// 0030252 // growth hormone secretion // traceable author statement /// 0030252 // growth hormone secretion // inferred from electronic annotation /// 0030816 // positive regulation of cAMP metabolic process // inferred from direct assay /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // not recorded /// 0032094 // response to food // inferred from electronic annotation /// 0032094 // response to food // not recorded /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0042748 // circadian sleep/wake cycle, non-REM sleep // inferred from direct assay /// 0045941 // positive regulation of transcription // inferred from direct assay /// 0046005 // positive regulation of circadian sleep/wake cycle, REM sleep // not recorded /// 0046010 // positive regulation of circadian sleep/wake cycle, non-REM sleep // inferred from mutant phenotype /// 0046887 // positive regulation of hormone secretion // inferred from electronic annotation /// 0046887 // positive regulation of hormone secretion // not recorded /// 0060124 // positive regulation of growth hormone secretion // inferred from electronic annotation /// 0060124 // positive regulation of growth hormone secretion // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043195 // terminal button // inferred from electronic annotation /// 0043195 // terminal button // not recorded /// 0043204 // perikaryon // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay 0005179 // hormone activity // inferred from electronic annotation /// 0016608 // growth hormone-releasing hormone activity // inferred from direct assay /// 0016608 // growth hormone-releasing hormone activity // not recorded /// 0016608 // growth hormone-releasing hormone activity // inferred from electronic annotation /// 0031770 // growth hormone-releasing hormone receptor binding // inferred by curator /// 0031770 // growth hormone-releasing hormone receptor binding // not recorded /// 0031770 // growth hormone-releasing hormone receptor binding // inferred from electronic annotation 1387218_at NM_013042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013042.1 /DB_XREF=gi:6981643 /GEN=Tff3 /FEA=FLmRNA /CNT=7 /TID=Rn.9960.1 /TIER=FL /STK=5 /UG=Rn.9960 /LL=25563 /DEF=Rattus norvegicus Trefoil factor (intestinal) (Tff3), mRNA. /PROD=trefoil factor (intestinal) /FL=gb:NM_013042.1 gb:U48825.1 gb:M80826.1 NM_013042 trefoil factor 3, intestinal Tff3 25563 NM_013042 0042060 // wound healing // traceable author statement /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from electronic annotation /// 0030141 // stored secretory granule // not recorded /// 0032579 // apical lamina of hyaline layer // inferred from electronic annotation 1387219_at NM_012715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012715.1 /DB_XREF=gi:6978506 /GEN=Adm /FEA=FLmRNA /CNT=5 /TID=Rn.10232.1 /TIER=FL /STK=5 /UG=Rn.10232 /LL=25026 /DEF=Rattus norvegicus Adrenomedullin (Adm), mRNA. /PROD=adrenomedullin precursor /FL=gb:U15419.1 gb:D15069.1 gb:NM_012715.1 NM_012715 adrenomedullin Adm 25026 NM_012715 0001666 // response to hypoxia // inferred from expression pattern /// 0001843 // neural tube closure // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0002026 // regulation of the force of heart contraction // inferred from direct assay /// 0006950 // response to stress // inferred from mutant phenotype /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007565 // female pregnancy // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008209 // androgen metabolic process // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0009409 // response to cold // inferred from expression pattern /// 0009611 // response to wounding // inferred from direct assay /// 0010033 // response to organic substance // inferred from expression pattern /// 0010460 // positive regulation of heart rate // inferred from direct assay /// 0019933 // cAMP-mediated signaling // inferred from expression pattern /// 0031100 // organ regeneration // inferred from expression pattern /// 0031102 // neuron projection regeneration // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from mutant phenotype /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0042475 // odontogenesis of dentine-containing tooth // inferred from expression pattern /// 0042594 // response to starvation // inferred from expression pattern /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0045906 // negative regulation of vasoconstriction // inferred from electronic annotation /// 0045906 // negative regulation of vasoconstriction // not recorded /// 0045909 // positive regulation of vasodilation // inferred from mutant phenotype /// 0046879 // hormone secretion // inferred from mutant phenotype /// 0048589 // developmental growth // inferred from electronic annotation /// 0048589 // developmental growth // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0055074 // calcium ion homeostasis // inferred from mutant phenotype /// 0060670 // branching involved in embryonic placenta morphogenesis // inferred from electronic annotation /// 0060670 // branching involved in embryonic placenta morphogenesis // not recorded /// 0060712 // spongiotrophoblast layer development // inferred from electronic annotation /// 0060712 // spongiotrophoblast layer development // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005179 // hormone activity // inferred from electronic annotation /// 0031700 // adrenomedullin receptor binding // inferred from direct assay 1387220_at NM_019323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019323.1 /DB_XREF=gi:11024705 /GEN=Mcpt9 /FEA=FLmRNA /CNT=5 /TID=Rn.10651.1 /TIER=FL /STK=5 /UG=Rn.10651 /LL=54272 /DEF=Rattus norvegicus mast cell protease 9 (Mcpt9), mRNA. /PROD=mast cell protease 9 /FL=gb:NM_019323.1 gb:U72143.1 NM_019323 mast cell protease 9 Mcpt9 54272 NM_019323 0006508 // proteolysis // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387221_at NM_024356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024356.1 /DB_XREF=gi:13242244 /GEN=Gch /FEA=FLmRNA /CNT=40 /TID=Rn.28195.1 /TIER=FL /STK=4 /UG=Rn.28195 /LL=29244 /DEF=Rattus norvegicus GTP cyclohydrolase 1 (Gch), mRNA. /PROD=GTP cyclohydrolase 1 /FL=gb:NM_024356.1 gb:M58364.1 NM_024356 GTP cyclohydrolase 1 Gch1 29244 NM_024356 0006184 // GTP catabolic process // not recorded /// 0006461 // protein complex assembly // inferred from direct assay /// 0006729 // tetrahydrobiopterin biosynthetic process // not recorded /// 0006729 // tetrahydrobiopterin biosynthetic process // traceable author statement /// 0006729 // tetrahydrobiopterin biosynthetic process // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008217 // regulation of blood pressure // not recorded /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0014916 // regulation of lung blood pressure // inferred from electronic annotation /// 0014916 // regulation of lung blood pressure // not recorded /// 0032496 // response to lipopolysaccharide // not recorded /// 0034341 // response to interferon-gamma // not recorded /// 0034612 // response to tumor necrosis factor // not recorded /// 0042311 // vasodilation // inferred from mutant phenotype /// 0042416 // dopamine biosynthetic process // not recorded /// 0042559 // pteridine and derivative biosynthetic process // not recorded /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0046654 // tetrahydrofolate biosynthetic process // inferred from electronic annotation /// 0048265 // response to pain // inferred from direct assay /// 0050884 // neuromuscular process controlling posture // not recorded /// 0051000 // positive regulation of nitric-oxide synthase activity // not recorded /// 0051066 // dihydrobiopterin metabolic process // inferred from direct assay /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051260 // protein homooligomerization // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0031410 // cytoplasmic vesicle // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0043234 // protein complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003934 // GTP cyclohydrolase I activity // inferred from direct assay /// 0003934 // GTP cyclohydrolase I activity // not recorded /// 0003934 // GTP cyclohydrolase I activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0008270 // zinc ion binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030742 // GTP-dependent protein binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from direct assay 1387222_at NM_019907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019907.1 /DB_XREF=gi:9845243 /GEN=Cript /FEA=FLmRNA /CNT=16 /TID=Rn.30508.1 /TIER=FL /STK=4 /UG=Rn.30508 /LL=56725 /DEF=Rattus norvegicus postsynaptic protein Cript (Cript), mRNA. /PROD=postsynaptic protein CRIPT /FL=gb:AF047384.1 gb:NM_019907.1 NM_019907 cysteine-rich PDZ-binding protein Cript 56725 NM_019907 0031122 // cytoplasmic microtubule organization // inferred from direct assay /// 0045184 // establishment of protein localization // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043198 // dendritic shaft // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0030165 // PDZ domain binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from physical interaction 1387223_at NM_017193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017193.1 /DB_XREF=gi:8393640 /GEN=Kat2 /FEA=FLmRNA /CNT=14 /TID=Rn.11133.1 /TIER=FL /STK=4 /UG=Rn.11133 /LL=29416 /DEF=Rattus norvegicus kynurenine aminotransferase II (Kat2), mRNA. /PROD=kynurenine aminotransferase II /FL=gb:NM_017193.1 NM_017193 aminoadipate aminotransferase Aadat 29416 NM_017193 0006103 // 2-oxoglutarate metabolic process // not recorded /// 0006103 // 2-oxoglutarate metabolic process // inferred from sequence or structural similarity /// 0006536 // glutamate metabolic process // not recorded /// 0006536 // glutamate metabolic process // inferred from sequence or structural similarity /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0019441 // tryptophan catabolic process to kynurenine // inferred from direct assay /// 0070189 // kynurenine metabolic process // not recorded /// 0070189 // kynurenine metabolic process // inferred from sequence or structural similarity 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008483 // transaminase activity // traceable author statement /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016212 // kynurenine-oxoglutarate transaminase activity // inferred from direct assay /// 0016212 // kynurenine-oxoglutarate transaminase activity // not recorded /// 0016212 // kynurenine-oxoglutarate transaminase activity // inferred from sequence or structural similarity /// 0016212 // kynurenine-oxoglutarate transaminase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from mutant phenotype /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0047536 // 2-aminoadipate transaminase activity // not recorded /// 0047536 // 2-aminoadipate transaminase activity // inferred from sequence or structural similarity /// 0047536 // 2-aminoadipate transaminase activity // inferred from electronic annotation 1387224_at NM_019304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019304.1 /DB_XREF=gi:9506534 /GEN=Dagk /FEA=FLmRNA /CNT=13 /TID=Rn.11413.1 /TIER=FL /STK=4 /UG=Rn.11413 /LL=54248 /DEF=Rattus norvegicus Diacylglycerol kinase 90kDa (Dagk), mRNA. /PROD=Diacylglycerol kinase 90kDa /FL=gb:D16100.1 gb:NM_019304.1 NM_019304 diacylglycerol kinase, beta Dgkb 54248 NM_019304 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004143 // diacylglycerol kinase activity // inferred from direct assay /// 0004143 // diacylglycerol kinase activity // not recorded /// 0004143 // diacylglycerol kinase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387225_at NM_133585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133585.1 /DB_XREF=gi:19424281 /GEN=LOC171116 /FEA=FLmRNA /CNT=13 /TID=Rn.9783.1 /TIER=FL /STK=4 /UG=Rn.9783 /LL=171116 /DEF=Rattus norvegicus RN protein (LOC171116), mRNA. /PROD=RN protein /FL=gb:NM_133585.1 gb:U93197.1 NM_133585 optic atrophy 1 homolog (human) Opa1 171116 NM_133585 0006915 // apoptosis // inferred from electronic annotation /// 0007007 // inner mitochondrial membrane organization // not recorded /// 0007601 // visual perception // inferred from expression pattern /// 0007601 // visual perception // not recorded /// 0045768 // positive regulation of anti-apoptosis // not recorded /// 0050896 // response to stimulus // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030061 // mitochondrial crista // not recorded /// 0030425 // dendrite // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1387226_at NM_019128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019128.1 /DB_XREF=gi:9506810 /GEN=Inexa /FEA=FLmRNA /CNT=19 /TID=Rn.10966.1 /TIER=FL /STK=4 /UG=Rn.10966 /LL=24503 /DEF=Rattus norvegicus Internexin, alpha (Inexa), mRNA. /PROD=internexin, alpha /FL=gb:NM_019128.1 NM_019128 internexin neuronal intermediate filament protein, alpha Ina 24503 NM_019128 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042246 // tissue regeneration // inferred from expression pattern /// 0045104 // intermediate filament cytoskeleton organization // not recorded /// 0045104 // intermediate filament cytoskeleton organization // inferred from electronic annotation /// 0060052 // neurofilament cytoskeleton organization // inferred from electronic annotation /// 0060052 // neurofilament cytoskeleton organization // not recorded 0005882 // intermediate filament // inferred from electronic annotation /// 0005883 // neurofilament // inferred from electronic annotation /// 0005883 // neurofilament // not recorded 0005198 // structural molecule activity // inferred from electronic annotation 1387227_at NM_057192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057192.1 /DB_XREF=gi:17933493 /GEN=Waspip /FEA=FLmRNA /CNT=11 /TID=Rn.24994.1 /TIER=FL /STK=4 /UG=Rn.24994 /LL=117538 /DEF=Rattus norvegicus Wiskott-Aldrich syndrome protein interacting protein (Waspip), mRNA. /PROD=Wiskott-Aldrich syndrome protein interactingprotein /FL=gb:NM_057192.1 NM_057192 WAS/WASL interacting protein family, member 1 Wipf1 117538 NM_057192 0030036 // actin cytoskeleton organization // inferred from mutant phenotype /// 0030048 // actin filament-based movement // inferred from electronic annotation /// 0030048 // actin filament-based movement // not recorded /// 0046827 // positive regulation of protein export from nucleus // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // inferred from direct assay /// 0015629 // actin cytoskeleton // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1387228_at NM_012879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012879.1 /DB_XREF=gi:6981547 /GEN=Slc2a2 /FEA=FLmRNA /CNT=10 /TID=Rn.64587.1 /TIER=FL /STK=4 /UG=Rn.64587 /LL=25351 /DEF=Rattus norvegicus Solute carrier family 2 A2 (gkucose transporter, type 2) (Slc2a2), mRNA. /PROD=solute carrier family 2 A2 (gkucose transporter,type 2) /FL=gb:J03145.1 gb:NM_012879.1 NM_012879 solute carrier family 2 (facilitated glucose transporter), member 2 Slc2a2 25351 NM_012879 0006810 // transport // inferred from electronic annotation /// 0007587 // sugar utilization // inferred from mutant phenotype /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0015755 // fructose transport // inferred from expression pattern /// 0015758 // glucose transport // inferred from direct assay /// 0015758 // glucose transport // inferred from expression pattern /// 0015758 // glucose transport // not recorded /// 0015758 // glucose transport // inferred from electronic annotation /// 0035428 // hexose transmembrane transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055085 // transmembrane transport // not recorded /// 0070837 // dehydroascorbic acid transport // inferred from direct assay /// 0070837 // dehydroascorbic acid transport // not recorded /// 0070837 // dehydroascorbic acid transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005903 // brush border // inferred from direct assay /// 0005903 // brush border // not recorded /// 0005903 // brush border // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0031526 // brush border membrane // inferred from direct assay 0005158 // insulin receptor binding // inferred from physical interaction /// 0005215 // transporter activity // inferred from electronic annotation /// 0005355 // glucose transmembrane transporter activity // inferred from direct assay /// 0005355 // glucose transmembrane transporter activity // inferred from electronic annotation /// 0005355 // glucose transmembrane transporter activity // inferred from expression pattern /// 0022891 // substrate-specific transmembrane transporter activity // inferred from electronic annotation /// 0033300 // dehydroascorbic acid transporter activity // inferred from direct assay /// 0033300 // dehydroascorbic acid transporter activity // not recorded /// 0033300 // dehydroascorbic acid transporter activity // inferred from electronic annotation /// 0055056 // D-glucose transmembrane transporter activity // inferred from direct assay /// 0055056 // D-glucose transmembrane transporter activity // not recorded /// 0055056 // D-glucose transmembrane transporter activity // inferred from electronic annotation 1387229_at NM_031793 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031793.1 /DB_XREF=gi:13929123 /GEN=Ppig /FEA=FLmRNA /CNT=23 /TID=Rn.10898.1 /TIER=FL /STK=4 /UG=Rn.10898 /LL=83624 /DEF=Rattus norvegicus matrin cyclophilin (matrin-cyp) (Ppig), mRNA. /PROD=matrin cyclophilin (matrin-cyp) /FL=gb:AF043642.1 gb:NM_031793.1 NM_031793 peptidylprolyl isomerase G Ppig 83624 NM_031793 0006457 // protein folding // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from direct assay /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from direct assay /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1387230_at NM_019345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019345.1 /DB_XREF=gi:9507104 /GEN=Slc12a3 /FEA=FLmRNA /CNT=13 /TID=Rn.10467.1 /TIER=FL /STK=4 /UG=Rn.10467 /LL=54300 /DEF=Rattus norvegicus solute carrier family 12, member 3 (Slc12a3), mRNA. /PROD=solute carrier family 12, member 3 /FL=gb:NM_019345.1 gb:U10097.1 NM_019345 solute carrier family 12 (sodium/chloride transporters), member 3 Slc12a3 54300 NM_019345 0006810 // transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from mutant phenotype /// 0006814 // sodium ion transport // not recorded /// 0006814 // sodium ion transport // inferred from sequence or structural similarity /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from mutant phenotype /// 0006821 // chloride transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from sequence or structural similarity /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay 0005215 // transporter activity // not recorded /// 0005215 // transporter activity // inferred from sequence or structural similarity /// 0005215 // transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0015377 // cation:chloride symporter activity // inferred from electronic annotation /// 0015378 // sodium:chloride symporter activity // inferred from direct assay /// 0015378 // sodium:chloride symporter activity // inferred from mutant phenotype 1387231_at AF288290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF288290.1 /DB_XREF=gi:9799620 /GEN=RPT /FEA=FLmRNA /CNT=12 /TID=Rn.33647.1 /TIER=ConsEnd /STK=2 /UG=Rn.33647 /LL=79032 /DEF=Rattus norvegicus RPT protein (RPT) mRNA, partial cds; nuclear gene for mitochondrial product. /PROD=RPT protein /FL=gb:AF288289.1 gb:NM_024001.1 AF288290 MRS2 magnesium homeostasis factor homolog (S. cerevisiae) Mrs2 79032 NM_024001 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1387232_at NM_012827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012827.1 /DB_XREF=gi:6978570 /GEN=Bmp4 /FEA=FLmRNA /CNT=10 /TID=Rn.10318.1 /TIER=FL /STK=4 /UG=Rn.10318 /LL=25296 /DEF=Rattus norvegicus Bone morphogenetic protein 4 (Bmp4), mRNA. /PROD=bone morphogenetic protein 4 /FL=gb:NM_012827.1 NM_012827 bone morphogenetic protein 4 Bmp4 25296 NM_012827 0000186 // activation of MAPKK activity // not recorded /// 0000186 // activation of MAPKK activity // inferred from sequence or structural similarity /// 0000186 // activation of MAPKK activity // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001503 // ossification // inferred from electronic annotation /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0001541 // ovarian follicle development // inferred from mutant phenotype /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001649 // osteoblast differentiation // not recorded /// 0001649 // osteoblast differentiation // inferred from sequence or structural similarity /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001654 // eye development // not recorded /// 0001656 // metanephros development // inferred from electronic annotation /// 0001656 // metanephros development // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from sequence or structural similarity /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001707 // mesoderm formation // not recorded /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0001759 // organ induction // inferred from electronic annotation /// 0001759 // organ induction // not recorded /// 0001822 // kidney development // not recorded /// 0001822 // kidney development // inferred from sequence or structural similarity /// 0001822 // kidney development // inferred from electronic annotation /// 0001823 // mesonephros development // not recorded /// 0001823 // mesonephros development // inferred from sequence or structural similarity /// 0001823 // mesonephros development // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0001938 // positive regulation of endothelial cell proliferation // inferred from sequence or structural similarity /// 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001944 // vasculature development // not recorded /// 0001944 // vasculature development // inferred from electronic annotation /// 0002043 // blood vessel endothelial cell proliferation involved in sprouting angiogenesis // not recorded /// 0002043 // blood vessel endothelial cell proliferation involved in sprouting angiogenesis // inferred from sequence or structural similarity /// 0002043 // blood vessel endothelial cell proliferation involved in sprouting angiogenesis // inferred from electronic annotation /// 0002244 // hemopoietic progenitor cell differentiation // not recorded /// 0002244 // hemopoietic progenitor cell differentiation // inferred from sequence or structural similarity /// 0002244 // hemopoietic progenitor cell differentiation // inferred from electronic annotation /// 0003014 // renal system process // inferred from electronic annotation /// 0003014 // renal system process // not recorded /// 0003337 // mesenchymal to epithelial transition involved in metanephros morphogenesis // not recorded /// 0003337 // mesenchymal to epithelial transition involved in metanephros morphogenesis // inferred from sequence or structural similarity /// 0003337 // mesenchymal to epithelial transition involved in metanephros morphogenesis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007281 // germ cell development // inferred from electronic annotation /// 0007281 // germ cell development // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0007498 // mesoderm development // non-traceable author statement /// 0007500 // mesodermal cell fate determination // inferred from electronic annotation /// 0007500 // mesodermal cell fate determination // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0008283 // cell proliferation // non-traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0009888 // tissue development // not recorded /// 0009888 // tissue development // inferred from electronic annotation /// 0010159 // specification of organ position // inferred from electronic annotation /// 0010159 // specification of organ position // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from direct assay /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010595 // positive regulation of endothelial cell migration // not recorded /// 0010595 // positive regulation of endothelial cell migration // inferred from sequence or structural similarity /// 0010595 // positive regulation of endothelial cell migration // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0010629 // negative regulation of gene expression // not recorded /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from sequence or structural similarity /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0010942 // positive regulation of cell death // inferred from electronic annotation /// 0010942 // positive regulation of cell death // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0021537 // telencephalon development // not recorded /// 0021537 // telencephalon development // inferred from electronic annotation /// 0021904 // dorsal/ventral neural tube patterning // inferred from electronic annotation /// 0021904 // dorsal/ventral neural tube patterning // not recorded /// 0021978 // telencephalon regionalization // inferred from electronic annotation /// 0021978 // telencephalon regionalization // not recorded /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0021983 // pituitary gland development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // not recorded /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // not recorded /// 0030501 // positive regulation of bone mineralization // inferred from sequence or structural similarity /// 0030501 // positive regulation of bone mineralization // inferred from electronic annotation /// 0030509 // BMP signaling pathway // not recorded /// 0030509 // BMP signaling pathway // inferred from sequence or structural similarity /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0032331 // negative regulation of chondrocyte differentiation // inferred from electronic annotation /// 0032331 // negative regulation of chondrocyte differentiation // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0032582 // negative regulation of gene-specific transcription // inferred from sequence or structural similarity /// 0032582 // negative regulation of gene-specific transcription // inferred from electronic annotation /// 0032967 // positive regulation of collagen biosynthetic process // not recorded /// 0032967 // positive regulation of collagen biosynthetic process // inferred from sequence or structural similarity /// 0034504 // protein localization in nucleus // not recorded /// 0034504 // protein localization in nucleus // inferred from sequence or structural similarity /// 0034504 // protein localization in nucleus // inferred from electronic annotation /// 0040007 // growth // inferred from electronic annotation /// 0042326 // negative regulation of phosphorylation // not recorded /// 0042326 // negative regulation of phosphorylation // inferred from sequence or structural similarity /// 0042326 // negative regulation of phosphorylation // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042476 // odontogenesis // inferred from expression pattern /// 0042476 // odontogenesis // not recorded /// 0042476 // odontogenesis // inferred from sequence or structural similarity /// 0042476 // odontogenesis // inferred from electronic annotation /// 0042487 // regulation of odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042487 // regulation of odontogenesis of dentine-containing tooth // not recorded /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // not recorded /// 0043010 // camera-type eye development // not recorded /// 0043010 // camera-type eye development // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from sequence or structural similarity /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0043401 // steroid hormone mediated signaling pathway // not recorded /// 0043401 // steroid hormone mediated signaling pathway // inferred from sequence or structural similarity /// 0043407 // negative regulation of MAP kinase activity // not recorded /// 0043407 // negative regulation of MAP kinase activity // inferred from sequence or structural similarity /// 0043407 // negative regulation of MAP kinase activity // inferred from electronic annotation /// 0043587 // tongue morphogenesis // inferred from expression pattern /// 0045165 // cell fate commitment // not recorded /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // inferred from direct assay /// 0045595 // regulation of cell differentiation // not recorded /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // not recorded /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045662 // negative regulation of myoblast differentiation // inferred from electronic annotation /// 0045662 // negative regulation of myoblast differentiation // not recorded /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from direct assay /// 0045669 // positive regulation of osteoblast differentiation // inferred from mutant phenotype /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from sequence or structural similarity /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045778 // positive regulation of ossification // inferred from direct assay /// 0045778 // positive regulation of ossification // inferred from mutant phenotype /// 0045778 // positive regulation of ossification // not recorded /// 0045778 // positive regulation of ossification // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // not recorded /// 0045786 // negative regulation of cell cycle // inferred from sequence or structural similarity /// 0045786 // negative regulation of cell cycle // inferred from electronic annotation /// 0045839 // negative regulation of mitosis // not recorded /// 0045839 // negative regulation of mitosis // inferred from sequence or structural similarity /// 0045839 // negative regulation of mitosis // inferred from electronic annotation /// 0045843 // negative regulation of striated muscle tissue development // inferred from electronic annotation /// 0045843 // negative regulation of striated muscle tissue development // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048286 // lung alveolus development // not recorded /// 0048333 // mesodermal cell differentiation // not recorded /// 0048333 // mesodermal cell differentiation // inferred from electronic annotation /// 0048392 // intermediate mesodermal cell differentiation // not recorded /// 0048392 // intermediate mesodermal cell differentiation // inferred from sequence or structural similarity /// 0048392 // intermediate mesodermal cell differentiation // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // not recorded /// 0048598 // embryonic morphogenesis // not recorded /// 0048598 // embryonic morphogenesis // inferred from electronic annotation /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded /// 0048646 // anatomical structure formation involved in morphogenesis // inferred from electronic annotation /// 0048660 // regulation of smooth muscle cell proliferation // not recorded /// 0048660 // regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from sequence or structural similarity /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0048701 // embryonic cranial skeleton morphogenesis // inferred from electronic annotation /// 0048701 // embryonic cranial skeleton morphogenesis // not recorded /// 0048715 // negative regulation of oligodendrocyte differentiation // inferred from mutant phenotype /// 0048745 // smooth muscle tissue development // not recorded /// 0048745 // smooth muscle tissue development // inferred from sequence or structural similarity /// 0048745 // smooth muscle tissue development // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from sequence or structural similarity /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0051145 // smooth muscle cell differentiation // not recorded /// 0051145 // smooth muscle cell differentiation // inferred from electronic annotation /// 0051150 // regulation of smooth muscle cell differentiation // inferred from electronic annotation /// 0051150 // regulation of smooth muscle cell differentiation // not recorded /// 0051216 // cartilage development // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0060041 // retina development in camera-type eye // inferred from expression pattern /// 0060197 // cloacal septation // inferred from electronic annotation /// 0060197 // cloacal septation // not recorded /// 0060235 // lens induction in camera-type eye // inferred from electronic annotation /// 0060235 // lens induction in camera-type eye // not recorded /// 0060272 // embryonic skeletal joint morphogenesis // inferred from electronic annotation /// 0060272 // embryonic skeletal joint morphogenesis // not recorded /// 0060348 // bone development // inferred from electronic annotation /// 0060348 // bone development // not recorded /// 0060363 // cranial suture morphogenesis // inferred from electronic annotation /// 0060363 // cranial suture morphogenesis // not recorded /// 0060389 // pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0060391 // positive regulation of SMAD protein nuclear translocation // not recorded /// 0060391 // positive regulation of SMAD protein nuclear translocation // inferred from sequence or structural similarity /// 0060391 // positive regulation of SMAD protein nuclear translocation // inferred from electronic annotation /// 0060393 // regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0060393 // regulation of pathway-restricted SMAD protein phosphorylation // inferred from sequence or structural similarity /// 0060393 // regulation of pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // not recorded /// 0060395 // SMAD protein signal transduction // inferred from sequence or structural similarity /// 0060395 // SMAD protein signal transduction // inferred from electronic annotation /// 0060425 // lung morphogenesis // not recorded /// 0060425 // lung morphogenesis // inferred from electronic annotation /// 0060429 // epithelium development // inferred from electronic annotation /// 0060429 // epithelium development // not recorded /// 0060433 // bronchus development // inferred from electronic annotation /// 0060433 // bronchus development // not recorded /// 0060438 // trachea development // inferred from electronic annotation /// 0060438 // trachea development // not recorded /// 0060440 // trachea formation // inferred from electronic annotation /// 0060440 // trachea formation // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // inferred from expression pattern /// 0060441 // epithelial tube branching involved in lung morphogenesis // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // inferred from electronic annotation /// 0060442 // branching involved in prostate gland morphogenesis // not recorded /// 0060442 // branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0060449 // bud elongation involved in lung branching // inferred from electronic annotation /// 0060449 // bud elongation involved in lung branching // not recorded /// 0060502 // epithelial cell proliferation involved in lung morphogenesis // inferred from electronic annotation /// 0060502 // epithelial cell proliferation involved in lung morphogenesis // not recorded /// 0060503 // bud dilation involved in lung branching // inferred from electronic annotation /// 0060503 // bud dilation involved in lung branching // not recorded /// 0060512 // prostate gland morphogenesis // inferred from electronic annotation /// 0060512 // prostate gland morphogenesis // not recorded /// 0060548 // negative regulation of cell death // not recorded /// 0060548 // negative regulation of cell death // inferred from sequence or structural similarity /// 0060548 // negative regulation of cell death // inferred from electronic annotation /// 0060592 // mammary gland formation // inferred from electronic annotation /// 0060592 // mammary gland formation // not recorded /// 0060681 // branch elongation involved in ureteric bud branching // inferred from electronic annotation /// 0060684 // epithelial-mesenchymal cell signaling // inferred from electronic annotation /// 0060684 // epithelial-mesenchymal cell signaling // not recorded /// 0060686 // negative regulation of prostatic bud formation // inferred from electronic annotation /// 0060686 // negative regulation of prostatic bud formation // not recorded /// 0060687 // regulation of branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0060687 // regulation of branching involved in prostate gland morphogenesis // not recorded /// 0060688 // regulation of morphogenesis of a branching structure // not recorded /// 0060688 // regulation of morphogenesis of a branching structure // inferred from electronic annotation /// 0061036 // positive regulation of cartilage development // inferred from electronic annotation /// 0061036 // positive regulation of cartilage development // not recorded /// 0061047 // positive regulation of branching involved in lung morphogenesis // inferred from electronic annotation /// 0061047 // positive regulation of branching involved in lung morphogenesis // not recorded /// 0061149 // BMP signaling pathway involved in ureter morphogenesis // not recorded /// 0061151 // BMP signaling pathway involved in renal system segmentation // not recorded /// 0061155 // pulmonary artery endothelial tube morphogenesis // not recorded /// 0061155 // pulmonary artery endothelial tube morphogenesis // inferred from sequence or structural similarity /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // not recorded /// 0071549 // cellular response to dexamethasone stimulus // inferred from direct assay /// 0072015 // glomerular visceral epithelial cell development // not recorded /// 0072097 // negative regulation of branch elongation involved in ureteric bud branching by BMP signaling pathway // not recorded /// 0072097 // negative regulation of branch elongation involved in ureteric bud branching by BMP signaling pathway // inferred from sequence or structural similarity /// 0072101 // specification of ureteric bud anterior/posterior symmetry by BMP signaling pathway // not recorded /// 0072101 // specification of ureteric bud anterior/posterior symmetry by BMP signaling pathway // inferred from sequence or structural similarity /// 0072104 // glomerular capillary formation // inferred from electronic annotation /// 0072104 // glomerular capillary formation // not recorded /// 0072125 // negative regulation of glomerular mesangial cell proliferation // not recorded /// 0072125 // negative regulation of glomerular mesangial cell proliferation // inferred from sequence or structural similarity /// 0072192 // ureter epithelial cell differentiation // not recorded /// 0072193 // ureter smooth muscle cell differentiation // not recorded /// 0072278 // metanephric comma-shaped body morphogenesis // not recorded /// 0072284 // metanephric S-shaped body morphogenesis // not recorded /// 0090184 // positive regulation of kidney development // not recorded /// 0090184 // positive regulation of kidney development // inferred from sequence or structural similarity /// 0090184 // positive regulation of kidney development // inferred from electronic annotation /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from mutant phenotype /// 0090191 // negative regulation of branching involved in ureteric bud morphogenesis // not recorded /// 0090191 // negative regulation of branching involved in ureteric bud morphogenesis // inferred from sequence or structural similarity /// 0090191 // negative regulation of branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0090194 // negative regulation of glomerulus development // not recorded /// 0090194 // negative regulation of glomerulus development // inferred from sequence or structural similarity /// 0090194 // negative regulation of glomerulus development // inferred from electronic annotation /// 2000005 // negative regulation of metanephric S-shaped body morphogenesis // inferred from sequence or structural similarity /// 2000007 // negative regulation of metanephric comma-shaped body morphogenesis // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0031988 // membrane-bounded vesicle // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0042056 // chemoattractant activity // not recorded /// 0042056 // chemoattractant activity // inferred from sequence or structural similarity /// 0042056 // chemoattractant activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0070700 // BMP receptor binding // inferred from electronic annotation /// 0070700 // BMP receptor binding // not recorded 1387233_at NM_017235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017235.1 /DB_XREF=gi:8393575 /GEN=Hsd17b7 /FEA=FLmRNA /CNT=10 /TID=Rn.7040.1 /TIER=FL /STK=4 /UG=Rn.7040 /LL=29540 /DEF=Rattus norvegicus hydroxysteroid 17-beta dehydrogenase 7 (Hsd17b7), mRNA. /PROD=hydroxysteroid 17-beta dehydrogenase 7 /FL=gb:NM_017235.1 gb:U44803.1 NM_017235 hydroxysteroid (17-beta) dehydrogenase 7 Hsd17b7 29540 NM_017235 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000253 // 3-keto sterol reductase activity // inferred from electronic annotation /// 0000253 // 3-keto sterol reductase activity // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004303 // estradiol 17-beta-dehydrogenase activity // inferred from electronic annotation /// 0005148 // prolactin receptor binding // inferred from mutant phenotype /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1387234_at NM_012826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012826.1 /DB_XREF=gi:6978564 /GEN=Azgp1 /FEA=FLmRNA /CNT=9 /TID=Rn.5007.1 /TIER=FL /STK=4 /UG=Rn.5007 /LL=25294 /DEF=Rattus norvegicus Zn - alpha2 - glycoprotein (Azgp1), mRNA. /PROD=zn - alpha2 - glycoprotein /FL=gb:NM_012826.1 gb:D21058.1 NM_012826 alpha-2-glycoprotein 1, zinc-binding Azgp1 25294 NM_012826 0006955 // immune response // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0007155 // cell adhesion // inferred from sequence or structural similarity /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 1387235_at NM_021655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021655.1 /DB_XREF=gi:11527393 /GEN=Chga /FEA=FLmRNA /CNT=14 /TID=Rn.41024.1 /TIER=FL /STK=4 /UG=Rn.41024 /LL=59263 /DEF=Rattus norvegicus Chromogranin A, parathyroid secretory protein 1 (Chga), mRNA. /PROD=chromogranin A, parathyroid secretory protein 1 /FL=gb:NM_021655.1 gb:AF145445.1 NM_021655 chromogranin A Chga 24258 NM_021655 0006996 // organelle organization // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation 0005515 // protein binding // not recorded 1387236_at NM_053404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053404.1 /DB_XREF=gi:16758133 /GEN=Dctn4 /FEA=FLmRNA /CNT=12 /TID=Rn.23941.1 /TIER=FL /STK=4 /UG=Rn.23941 /LL=84428 /DEF=Rattus norvegicus dynactin subunit p62 (Dctn4), mRNA. /PROD=dynactin subunit p62 /FL=gb:AF192494.1 gb:AF192493.1 gb:NM_053404.1 gb:AF190798.1 NM_053404 dynactin 4 Dctn4 84428 NM_053404 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005868 // cytoplasmic dynein complex // traceable author statement /// 0005938 // cell cortex // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0047485 // protein N-terminus binding // not recorded 1387237_at BM388722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388722 /DB_XREF=gi:18188775 /DB_XREF=UI-R-DZ0-ckm-l-08-0-UI.s1 /CLONE=UI-R-DZ0-ckm-l-08-0-UI /FEA=FLmRNA /CNT=12 /TID=Rn.45761.1 /TIER=ConsEnd /STK=4 /UG=Rn.45761 /LL=64632 /UG_GENE=Exo70 /UG_TITLE=rexo70 /FL=gb:AF032667.1 gb:NM_022691.1 BM388722 exocyst complex component 7 Exoc7 64632 NM_022691 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0006887 // exocytosis // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation 0000145 // exocyst // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0034451 // centriolar satellite // not recorded 0005515 // protein binding // not recorded 1387238_at NM_053869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053869.1 /DB_XREF=gi:16758737 /GEN=Arix /FEA=FLmRNA /CNT=9 /TID=Rn.2858.1 /TIER=FL /STK=4 /UG=Rn.2858 /LL=116648 /DEF=Rattus norvegicus aristaless (Drosophila) homeobox (Arix), mRNA. /PROD=aristaless (Drosophila) homeobox /FL=gb:U25967.1 gb:NM_053869.1 NM_053869 paired-like homeobox 2a Phox2a 116648 NM_053869 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0021523 // somatic motor neuron differentiation // inferred from electronic annotation /// 0021523 // somatic motor neuron differentiation // not recorded /// 0021703 // locus ceruleus development // inferred from electronic annotation /// 0021703 // locus ceruleus development // not recorded /// 0043576 // regulation of respiratory gaseous exchange // inferred from electronic annotation /// 0043576 // regulation of respiratory gaseous exchange // not recorded /// 0045449 // regulation of transcription // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048485 // sympathetic nervous system development // inferred from electronic annotation /// 0048485 // sympathetic nervous system development // not recorded /// 0048486 // parasympathetic nervous system development // inferred from electronic annotation /// 0048486 // parasympathetic nervous system development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1387239_a_at AB008803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB008803.1 /DB_XREF=gi:2627222 /FEA=FLmRNA /CNT=1 /TID=Rn.11155.2 /TIER=FL /STK=1 /UG=Rn.11155 /LL=29512 /UG_GENE=Pdi4 /DEF=Rattus norvegicus mRNA for peptidylarginine deiminase type IV, complete cds. /PROD=peptidylarginine deiminase type IV /FL=gb:AB008803.1 AB008803 peptidyl arginine deiminase, type IV Padi4 29512 NM_017227 0006350 // transcription // inferred from electronic annotation /// 0006464 // protein modification process // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0018101 // peptidyl-citrulline biosynthetic process from peptidyl-arginine // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004668 // protein-arginine deiminase activity // inferred from direct assay /// 0004668 // protein-arginine deiminase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387240_at NM_133543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133543.1 /DB_XREF=gi:19424207 /GEN=RoDH(III) /FEA=FLmRNA /CNT=7 /TID=Rn.31786.1 /TIER=FL /STK=4 /UG=Rn.31786 /LL=171065 /DEF=Rattus norvegicus retinol dehydrogenase type III (RoDH(III)), mRNA. /PROD=retinol dehydrogenase type III /FL=gb:U33501.1 gb:U18762.1 gb:NM_133543.1 NM_133543 retinol dehydrogenase 7 Rdh7 360420 NM_133543 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004745 // retinol dehydrogenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1387241_at NM_031696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031696.1 /DB_XREF=gi:13928969 /GEN=Gpr88 /FEA=FLmRNA /CNT=11 /TID=Rn.59513.1 /TIER=FL /STK=4 /UG=Rn.59513 /LL=64443 /DEF=Rattus norvegicus G-protein coupled receptor 88 (Gpr88), mRNA. /PROD=G-protein coupled receptor 88 /FL=gb:NM_031696.1 gb:AB042407.1 NM_031696 G-protein coupled receptor 88 Gpr88 64443 NM_031696 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1387242_at NM_019335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019335.1 /DB_XREF=gi:9506992 /GEN=Prkr /FEA=FLmRNA /CNT=9 /TID=Rn.10022.1 /TIER=FL /STK=4 /UG=Rn.10022 /LL=54287 /DEF=Rattus norvegicus Protein kinase, interferon-inducible double stranded RNA dependent (Prkr), mRNA. /PROD=Protein kinase, interferon-inducible doublestranded RNA dependent /FL=gb:L29281.1 gb:NM_019335.1 NM_019335 eukaryotic translation initiation factor 2-alpha kinase 2 Eif2ak2 54287 NM_019335 0006412 // translation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006926 // virus-infected cell apoptosis // not recorded /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009615 // response to virus // inferred from electronic annotation /// 0009636 // response to toxin // inferred from mutant phenotype /// 0010033 // response to organic substance // inferred from expression pattern /// 0030968 // endoplasmic reticulum unfolded protein response // not recorded /// 0032496 // response to lipopolysaccharide // inferred from mutant phenotype /// 0033197 // response to vitamin E // inferred from physical interaction /// 0033689 // negative regulation of osteoblast proliferation // not recorded /// 0033689 // negative regulation of osteoblast proliferation // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043330 // response to exogenous dsRNA // inferred from expression pattern /// 0046777 // protein autophosphorylation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387243_at K02422 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:K02422.1 /DB_XREF=gi:203762 /FEA=FLmRNA /CNT=7 /TID=Rn.5563.1 /TIER=FL /STK=4 /UG=Rn.5563 /LL=24297 /UG_GENE=Cyp1a2 /UG_TITLE=Cytochrome P450, subfamily I (aromatic compound-inducible), member A2 (Q42, form d) /DEF=Rat cytochrome P-450d methylcholanthrene-inducible gene, complete cds. /FL=gb:NM_012541.1 gb:K02422.1 K02422 cytochrome P450, family 1, subfamily a, polypeptide 2 Cyp1a2 24297 NM_012541 0006706 // steroid catabolic process // not recorded /// 0006725 // cellular aromatic compound metabolic process // not recorded /// 0006778 // porphyrin metabolic process // not recorded /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0006950 // response to stress // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0009403 // toxin biosynthetic process // not recorded /// 0009404 // toxin metabolic process // not recorded /// 0009791 // post-embryonic development // not recorded /// 0009820 // alkaloid metabolic process // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0010468 // regulation of gene expression // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016098 // monoterpenoid metabolic process // not recorded /// 0017144 // drug metabolic process // not recorded /// 0018894 // dibenzo-p-dioxin metabolic process // not recorded /// 0030324 // lung development // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032787 // monocarboxylic acid metabolic process // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042737 // drug catabolic process // not recorded /// 0042738 // exogenous drug catabolic process // not recorded /// 0045333 // cellular respiration // not recorded /// 0046483 // heterocycle metabolic process // not recorded /// 0050665 // hydrogen peroxide biosynthetic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded /// 0070989 // oxidative demethylation // not recorded /// 0071615 // oxidative deethylation // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from direct assay /// 0004497 // monooxygenase activity // not recorded /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from direct assay /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // not recorded /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0019825 // oxygen binding // not recorded /// 0019899 // enzyme binding // not recorded /// 0020037 // heme binding // not recorded /// 0020037 // heme binding // inferred from sequence or structural similarity /// 0020037 // heme binding // inferred from electronic annotation /// 0032451 // demethylase activity // not recorded /// 0034875 // caffeine oxidase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1387244_at NM_053899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053899.1 /DB_XREF=gi:16758771 /GEN=Cgr19 /FEA=FLmRNA /CNT=7 /TID=Rn.11138.1 /TIER=FL /STK=4 /UG=Rn.11138 /LL=116679 /DEF=Rattus norvegicus cell growth regulatory with ring finger domain (Cgr19), mRNA. /PROD=cell growth regulatory with ring finger domain /FL=gb:U66471.1 gb:NM_053899.1 NM_053899 cell growth regulator with ring finger domain 1 Cgrrf1 116679 NM_053899 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387245_at NM_017341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017341.1 /DB_XREF=gi:8394192 /GEN=RNLIP /FEA=FLmRNA /CNT=6 /TID=Rn.11192.1 /TIER=FL /STK=4 /UG=Rn.11192 /LL=50682 /DEF=Rattus norvegicus lingual lipase (RNLIP), mRNA. /PROD=lingual lipase /FL=gb:NM_017341.1 NM_017341 lipase, gastric Lipf 50682 NM_017341 0006108 // malate metabolic process // inferred from direct assay /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007586 // digestion // traceable author statement /// 0016042 // lipid catabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay 0004806 // triglyceride lipase activity // inferred from electronic annotation /// 0016298 // lipase activity // traceable author statement /// 0016615 // malate dehydrogenase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation 1387246_at NM_022945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022945.1 /DB_XREF=gi:12621113 /GEN=Vegp1 /FEA=FLmRNA /CNT=2 /TID=Rn.37454.1 /TIER=FL /STK=1 /UG=Rn.37454 /LL=65039 /DEF=Rattus norvegicus von Ebners gland protein 1 (Vegp1), mRNA. /PROD=von Ebners gland protein 1 /FL=gb:NM_022945.1 NM_022945 von Ebners gland protein 1 Vegp1 65039 NM_022945 0006810 // transport // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1387247_at M83745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M83745.1 /DB_XREF=gi:205062 /GEN=BDP /FEA=FLmRNA /CNT=12 /TID=Rn.11384.1 /TIER=FL /STK=4 /UG=Rn.11384 /LL=25204 /UG_TITLE=Protein convertase subtilisin kexin, type I /DEF=Rat homologue of Kex2 and furin proteins mRNA, complete cds. /FL=gb:M76705.1 gb:M83745.1 gb:NM_017091.1 M83745 proprotein convertase subtilisin/kexin type 1 Pcsk1 25204 NM_017091 0006508 // proteolysis // inferred from mutant phenotype /// 0006508 // proteolysis // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0009790 // embryo development // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010157 // response to chlorate // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016486 // peptide hormone processing // inferred from direct assay /// 0016486 // peptide hormone processing // inferred from mutant phenotype /// 0016486 // peptide hormone processing // not recorded /// 0016486 // peptide hormone processing // inferred from electronic annotation /// 0016540 // protein autoprocessing // inferred from mutant phenotype /// 0021983 // pituitary gland development // inferred from expression pattern /// 0022008 // neurogenesis // inferred from expression pattern /// 0031016 // pancreas development // inferred from expression pattern /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043043 // peptide biosynthetic process // inferred from electronic annotation /// 0043043 // peptide biosynthetic process // not recorded /// 0043278 // response to morphine // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0048678 // response to axon injury // inferred from expression pattern /// 0050714 // positive regulation of protein secretion // inferred from direct assay /// 0050714 // positive regulation of protein secretion // inferred from mutant phenotype /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from expression pattern /// 0051605 // protein maturation by peptide bond cleavage // not recorded /// 0051605 // protein maturation by peptide bond cleavage // inferred from electronic annotation /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0070542 // response to fatty acid // inferred from expression pattern /// 0070555 // response to interleukin-1 // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0030133 // transport vesicle // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004175 // endopeptidase activity // inferred from direct assay /// 0004175 // endopeptidase activity // inferred from mutant phenotype /// 0004175 // endopeptidase activity // not recorded /// 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0043559 // insulin binding // inferred from physical interaction /// 0051087 // chaperone binding // inferred from physical interaction 1387248_at D50135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D50135.1 /DB_XREF=gi:1890047 /FEA=FLmRNA /CNT=11 /TID=Rn.10047.1 /TIER=FL /STK=1 /UG=Rn.10047 /LL=29713 /UG_GENE=Kcnj5 /DEF=Rattus norvegicus mRNA for inward rectifying K channel, complete cds. /PROD=inward rectifying K channel /FL=gb:D50135.1 gb:NM_017297.1 gb:L35771.1 D50135 potassium inwardly-rectifying channel, subfamily J, member 5 Kcnj5 29713 NM_017297 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0009897 // external side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030315 // T-tubule // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // not recorded /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015467 // G-protein activated inward rectifier potassium channel activity // inferred from electronic annotation 1387249_at NM_053704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053704.1 /DB_XREF=gi:16758521 /GEN=Biklk /FEA=FLmRNA /CNT=4 /TID=Rn.38487.1 /TIER=FL /STK=4 /UG=Rn.38487 /LL=114496 /DEF=Rattus norvegicus Bcl2-interacting killer-like (Biklk), mRNA. /PROD=Bcl2-interacting killer-like /FL=gb:AF372501.1 gb:NM_053704.1 NM_053704 BCL2-interacting killer (apoptosis-inducing) Bik 114496 NM_053704 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0008584 // male gonad development // inferred from electronic annotation /// 0008584 // male gonad development // not recorded 0005740 // mitochondrial envelope // inferred from electronic annotation /// 0005740 // mitochondrial envelope // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0051400 // BH domain binding // inferred from physical interaction 1387250_at NM_017176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017176.1 /DB_XREF=gi:8393970 /GEN=Pla2g10 /FEA=FLmRNA /CNT=4 /TID=Rn.6828.1 /TIER=FL /STK=4 /UG=Rn.6828 /LL=29359 /DEF=Rattus norvegicus phospholipase A2, group X (Pla2g10), mRNA. /PROD=phospholipase A2, group X /FL=gb:NM_017176.1 gb:AF166100.1 NM_017176 phospholipase A2, group X Pla2g10 29359 NM_017176 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0010884 // positive regulation of lipid storage // not recorded /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0032270 // positive regulation of cellular protein metabolic process // not recorded /// 0032308 // positive regulation of prostaglandin secretion // not recorded /// 0043030 // regulation of macrophage activation // not recorded /// 0051977 // lysophospholipid transport // not recorded 0005576 // extracellular region // traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation 0004623 // phospholipase A2 activity // inferred from direct assay /// 0004623 // phospholipase A2 activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387251_at NM_019188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019188.1 /DB_XREF=gi:9506902 /GEN=Msmb /FEA=FLmRNA /CNT=4 /TID=Rn.10615.1 /TIER=FL /STK=4 /UG=Rn.10615 /LL=29311 /DEF=Rattus norvegicus beta-microseminoprotein (Msmb), mRNA. /PROD=beta-microseminoprotein /FL=gb:NM_019188.1 gb:U65486.1 NM_019188 microseminoprotein, beta Msmb 29311 NM_019188 0005576 // extracellular region // inferred from electronic annotation 1387252_at NM_053801 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053801.1 /DB_XREF=gi:16758645 /GEN=Sec14l2 /FEA=FLmRNA /CNT=5 /TID=Rn.46850.1 /TIER=FL /STK=4 /UG=Rn.46850 /LL=116486 /DEF=Rattus norvegicus SEC14 (S. cerevisiae)-like 2 (Sec14l2), mRNA. /PROD=SEC14 (S. cerevisiae)-like 2 /FL=gb:NM_053801.1 gb:AF309558.1 NM_053801 SEC14-like 2 (S. cerevisiae) Sec14l2 116486 NM_053801 0006350 // transcription // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045542 // positive regulation of cholesterol biosynthetic process // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0008047 // enzyme activator activity // inferred from direct assay /// 0008289 // lipid binding // inferred from electronic annotation /// 0016765 // transferase activity, transferring alkyl or aryl (other than methyl) groups // inferred from direct assay 1387253_at NM_022284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022284.1 /DB_XREF=gi:11596860 /GEN=Guca2b /FEA=FLmRNA /CNT=5 /TID=Rn.1851.1 /TIER=FL /STK=4 /UG=Rn.1851 /LL=64055 /DEF=Rattus norvegicus uroguanylin (Guca2b), mRNA. /PROD=uroguanylin /FL=gb:U73898.1 gb:U75186.1 gb:NM_022284.1 gb:U41322.1 NM_022284 guanylate cyclase activator 2B Guca2b 64055 NM_022284 0006182 // cGMP biosynthetic process // inferred from electronic annotation /// 0006182 // cGMP biosynthetic process // not recorded /// 0007588 // excretion // inferred from electronic annotation /// 0007588 // excretion // not recorded /// 0007589 // body fluid secretion // inferred from electronic annotation /// 0007589 // body fluid secretion // not recorded /// 0030104 // water homeostasis // non-traceable author statement /// 0030802 // regulation of cyclic nucleotide biosynthetic process // inferred from direct assay /// 0045776 // negative regulation of blood pressure // inferred from electronic annotation /// 0045776 // negative regulation of blood pressure // not recorded /// 0050801 // ion homeostasis // traceable author statement 0005576 // extracellular region // inferred from electronic annotation 0008047 // enzyme activator activity // inferred from electronic annotation 1387254_at NM_021669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021669.1 /DB_XREF=gi:11067386 /GEN=LOC59301 /FEA=FLmRNA /CNT=5 /TID=Rn.42103.1 /TIER=FL /STK=4 /UG=Rn.42103 /LL=59301 /DEF=Rattus norvegicus ghrelin precursor (LOC59301), mRNA. /PROD=ghrelin precursor /FL=gb:AB035699.1 gb:AB029433.1 gb:NM_021669.1 NM_021669 ghrelin/obestatin prepropeptide Ghrl 59301 NM_021669 0000187 // activation of MAPK activity // not recorded /// 0000187 // activation of MAPK activity // inferred from sequence or structural similarity /// 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0001696 // gastric acid secretion // inferred from direct assay /// 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0001937 // negative regulation of endothelial cell proliferation // inferred from sequence or structural similarity /// 0001937 // negative regulation of endothelial cell proliferation // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0008154 // actin polymerization or depolymerization // not recorded /// 0008154 // actin polymerization or depolymerization // inferred from sequence or structural similarity /// 0008154 // actin polymerization or depolymerization // inferred from electronic annotation /// 0008343 // adult feeding behavior // not recorded /// 0008343 // adult feeding behavior // inferred from sequence or structural similarity /// 0008343 // adult feeding behavior // inferred from electronic annotation /// 0008542 // visual learning // inferred from direct assay /// 0009725 // response to hormone stimulus // not recorded /// 0009725 // response to hormone stimulus // inferred from sequence or structural similarity /// 0009725 // response to hormone stimulus // inferred from electronic annotation /// 0016358 // dendrite development // inferred from electronic annotation /// 0016358 // dendrite development // not recorded /// 0032024 // positive regulation of insulin secretion // inferred from direct assay /// 0032095 // regulation of response to food // inferred from direct assay /// 0032097 // positive regulation of response to food // inferred from direct assay /// 0032100 // positive regulation of appetite // not recorded /// 0032100 // positive regulation of appetite // inferred from sequence or structural similarity /// 0032100 // positive regulation of appetite // inferred from electronic annotation /// 0032691 // negative regulation of interleukin-1 beta production // not recorded /// 0032691 // negative regulation of interleukin-1 beta production // inferred from sequence or structural similarity /// 0032691 // negative regulation of interleukin-1 beta production // inferred from electronic annotation /// 0040013 // negative regulation of locomotion // inferred from electronic annotation /// 0040013 // negative regulation of locomotion // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from sequence or structural similarity /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042322 // negative regulation of circadian sleep/wake cycle, REM sleep // inferred from electronic annotation /// 0042322 // negative regulation of circadian sleep/wake cycle, REM sleep // not recorded /// 0042536 // negative regulation of tumor necrosis factor biosynthetic process // not recorded /// 0042536 // negative regulation of tumor necrosis factor biosynthetic process // inferred from sequence or structural similarity /// 0042536 // negative regulation of tumor necrosis factor biosynthetic process // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // not recorded /// 0043627 // response to estrogen stimulus // inferred from sequence or structural similarity /// 0043627 // response to estrogen stimulus // inferred from electronic annotation /// 0045409 // negative regulation of interleukin-6 biosynthetic process // not recorded /// 0045409 // negative regulation of interleukin-6 biosynthetic process // inferred from sequence or structural similarity /// 0045409 // negative regulation of interleukin-6 biosynthetic process // inferred from electronic annotation /// 0046010 // positive regulation of circadian sleep/wake cycle, non-REM sleep // inferred from electronic annotation /// 0046010 // positive regulation of circadian sleep/wake cycle, non-REM sleep // not recorded /// 0046676 // negative regulation of insulin secretion // inferred from direct assay /// 0046676 // negative regulation of insulin secretion // not recorded /// 0046676 // negative regulation of insulin secretion // inferred from electronic annotation /// 0046697 // decidualization // not recorded /// 0046697 // decidualization // inferred from sequence or structural similarity /// 0046697 // decidualization // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // not recorded /// 0050728 // negative regulation of inflammatory response // inferred from sequence or structural similarity /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0051461 // positive regulation of adrenocorticotropin secretion // inferred from electronic annotation /// 0051461 // positive regulation of adrenocorticotropin secretion // not recorded /// 0051464 // positive regulation of cortisol secretion // inferred from electronic annotation /// 0051464 // positive regulation of cortisol secretion // not recorded /// 0051965 // positive regulation of synaptogenesis // inferred from electronic annotation /// 0051965 // positive regulation of synaptogenesis // not recorded /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded /// 0060124 // positive regulation of growth hormone secretion // inferred from electronic annotation /// 0060124 // positive regulation of growth hormone secretion // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred by curator /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from sequence or structural similarity /// 0030424 // axon // inferred from electronic annotation 0001664 // G-protein-coupled receptor binding // inferred from physical interaction /// 0005179 // hormone activity // inferred from direct assay /// 0005179 // hormone activity // inferred from electronic annotation /// 0016608 // growth hormone-releasing hormone activity // inferred from direct assay /// 0016608 // growth hormone-releasing hormone activity // inferred from electronic annotation /// 0030296 // protein tyrosine kinase activator activity // not recorded /// 0030296 // protein tyrosine kinase activator activity // inferred from sequence or structural similarity /// 0030296 // protein tyrosine kinase activator activity // inferred from electronic annotation /// 0031768 // ghrelin receptor binding // inferred from mutant phenotype 1387255_at NM_012818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012818.1 /DB_XREF=gi:6978426 /GEN=Aanat /FEA=FLmRNA /CNT=5 /TID=Rn.10234.1 /TIER=FL /STK=4 /UG=Rn.10234 /LL=25120 /DEF=Rattus norvegicus Arylalkylamine N - acetyltransferase (Serotonin N - acetyltransferase) (Aanat), mRNA. /PROD=arylalkylamine N - acetyltransferase (SerotoninN - acetyltransferase) /FL=gb:U40803.1 gb:NM_012818.1 gb:U38306.1 NM_012818 arylalkylamine N-acetyltransferase Aanat 25120 NM_012818 0007623 // circadian rhythm // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0009416 // response to light stimulus // inferred from expression pattern /// 0009648 // photoperiodism // non-traceable author statement /// 0010043 // response to zinc ion // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0030187 // melatonin biosynthetic process // traceable author statement /// 0030187 // melatonin biosynthetic process // inferred from electronic annotation /// 0032868 // response to insulin stimulus // inferred from direct assay /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0034695 // response to prostaglandin E stimulus // inferred from direct assay /// 0043153 // entrainment of circadian clock by photoperiod // traceable author statement /// 0046688 // response to copper ion // inferred from direct assay /// 0048511 // rhythmic process // inferred from electronic annotation /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004059 // aralkylamine N-acetyltransferase activity // inferred from direct assay /// 0004059 // aralkylamine N-acetyltransferase activity // inferred from mutant phenotype /// 0004059 // aralkylamine N-acetyltransferase activity // not recorded /// 0004059 // aralkylamine N-acetyltransferase activity // traceable author statement /// 0004059 // aralkylamine N-acetyltransferase activity // inferred from electronic annotation /// 0004060 // arylamine N-acetyltransferase activity // inferred from electronic annotation /// 0004060 // arylamine N-acetyltransferase activity // not recorded /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387256_at NM_020078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020078.1 /DB_XREF=gi:9910117 /GEN=Adam1 /FEA=FLmRNA /CNT=4 /TID=Rn.42919.1 /TIER=FL /STK=4 /UG=Rn.42919 /LL=56777 /DEF=Rattus norvegicus a disintegrin and metalloproteinase domain 1 (fertilin alpha) (Adam1), mRNA. /PROD=a disintegrin and metalloprotease domain 1(fertilin alpha) /FL=gb:NM_020078.1 NM_020078 a disintegrin and metallopeptidase domain 1a Adam1a 56777 NM_020078 0006508 // proteolysis // non-traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007339 // binding of sperm to zona pellucida // not recorded /// 0009566 // fertilization // non-traceable author statement 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045121 // membrane raft // not recorded 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // non-traceable author statement /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387257_at NM_022670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022670.1 /DB_XREF=gi:12083602 /GEN=Sct /FEA=FLmRNA /CNT=4 /TID=Rn.9919.1 /TIER=FL /STK=4 /UG=Rn.9919 /LL=24769 /DEF=Rattus norvegicus Secretin (Sct), mRNA. /PROD=secretin /FL=gb:M31495.1 gb:NM_022670.1 NM_022670 secretin Sct 24769 NM_022670 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation 1387258_a_at D11475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D11475.1 /DB_XREF=gi:220786 /FEA=FLmRNA /CNT=22 /TID=Rn.76652.1 /TIER=FL /STK=3 /UG=Rn.76652 /LL=25604 /UG_GENE=Pcmt1 /DEF=Rat mRNA for isoaspartyl protein carboxyl methyltransferase, complete cds. /PROD=isoaspartyl protein carboxyl methyltransferase /FL=gb:NM_013073.1 gb:D11475.1 gb:M26686.1 D11475 protein-L-isoaspartate (D-aspartate) O-methyltransferase 1 Pcmt1 25604 NM_013073 0006464 // protein modification process // inferred from electronic annotation /// 0006479 // protein methylation // not recorded /// 0046498 // S-adenosylhomocysteine metabolic process // inferred from direct assay /// 0046500 // S-adenosylmethionine metabolic process // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004719 // protein-L-isoaspartate (D-aspartate) O-methyltransferase activity // inferred from direct assay /// 0004719 // protein-L-isoaspartate (D-aspartate) O-methyltransferase activity // not recorded /// 0004719 // protein-L-isoaspartate (D-aspartate) O-methyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1387259_at AF097593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF097593.1 /DB_XREF=gi:3983130 /FEA=FLmRNA /CNT=23 /TID=Rn.17239.1 /TIER=FL+Stack /STK=8 /UG=Rn.17239 /LL=83501 /UG_GENE=Cdh2 /DEF=Rattus norvegicus testicular N-cadherin mRNA, complete cds. /PROD=testicular N-cadherin /FL=gb:AB017695.1 gb:NM_031333.1 gb:AF097593.1 AF097593 cadherin 2 Cdh2 83501 NM_031333 0007155 // cell adhesion // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // not recorded /// 0007157 // heterophilic cell-cell adhesion // inferred from electronic annotation /// 0007157 // heterophilic cell-cell adhesion // not recorded /// 0007416 // synapse assembly // inferred from mutant phenotype /// 0016337 // cell-cell adhesion // inferred from direct assay /// 0016339 // calcium-dependent cell-cell adhesion // inferred from mutant phenotype /// 0016339 // calcium-dependent cell-cell adhesion // not recorded /// 0016339 // calcium-dependent cell-cell adhesion // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0031641 // regulation of myelination // inferred from mutant phenotype /// 0032880 // regulation of protein localization // inferred from mutant phenotype /// 0035023 // regulation of Rho protein signal transduction // inferred from mutant phenotype /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // not recorded /// 0050770 // regulation of axonogenesis // inferred from mutant phenotype /// 0051291 // protein heterooligomerization // inferred from physical interaction 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0005913 // cell-cell adherens junction // not recorded /// 0005916 // fascia adherens // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016342 // catenin complex // inferred from electronic annotation /// 0016342 // catenin complex // not recorded /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0044456 // synapse part // inferred from direct assay /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // not recorded /// 0045202 // synapse // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction /// 0042153 // RPTP-like protein binding // inferred from electronic annotation /// 0042153 // RPTP-like protein binding // not recorded /// 0045294 // alpha-catenin binding // inferred from electronic annotation /// 0045294 // alpha-catenin binding // not recorded /// 0045295 // gamma-catenin binding // inferred from electronic annotation /// 0045295 // gamma-catenin binding // not recorded 1387260_at NM_053713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053713.1 /DB_XREF=gi:16758529 /GEN=Klf4 /FEA=FLmRNA /CNT=19 /TID=Rn.7719.1 /TIER=FL /STK=3 /UG=Rn.7719 /LL=114505 /DEF=Rattus norvegicus Kruppel-like factor 4 (gut) (Klf4), mRNA. /PROD=Kruppel-like factor 4 (gut) /FL=gb:NM_053713.1 gb:AF390546.1 NM_053713 Kruppel-like factor 4 (gut) Klf4 114505 NM_053713 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009913 // epidermal cell differentiation // inferred from electronic annotation /// 0009913 // epidermal cell differentiation // not recorded /// 0014067 // negative regulation of phosphoinositide 3-kinase cascade // inferred from mutant phenotype /// 0014740 // negative regulation of muscle hyperplasia // inferred from mutant phenotype /// 0016481 // negative regulation of transcription // inferred from mutant phenotype /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0019827 // stem cell maintenance // not recorded /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031077 // post-embryonic camera-type eye development // inferred from electronic annotation /// 0031077 // post-embryonic camera-type eye development // not recorded /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0032526 // response to retinoic acid // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042221 // response to chemical stimulus // inferred from electronic annotation /// 0042221 // response to chemical stimulus // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from direct assay /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0048730 // epidermis morphogenesis // inferred from electronic annotation /// 0048730 // epidermis morphogenesis // not recorded /// 0051898 // negative regulation of protein kinase B signaling cascade // inferred from mutant phenotype /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from mutant phenotype 0000785 // chromatin // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from direct assay /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from direct assay /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0035014 // phosphoinositide 3-kinase regulator activity // inferred from mutant phenotype /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1387261_at NM_017042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017042.1 /DB_XREF=gi:8394032 /GEN=Ppp3cb /FEA=FLmRNA /CNT=15 /TID=Rn.11063.1 /TIER=FL /STK=3 /UG=Rn.11063 /LL=24675 /DEF=Rattus norvegicus Calcineurin subunit A beta (Ppp3cb), mRNA. /PROD=calcineurin subunit A beta /FL=gb:D90036.1 gb:NM_017042.1 gb:M31809.1 NM_017042 protein phosphatase 3, catalytic subunit, beta isoform Ppp3cb 24675 NM_017042 0001915 // negative regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0001915 // negative regulation of T cell mediated cytotoxicity // not recorded /// 0001975 // response to amphetamine // inferred from expression pattern /// 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0016311 // dephosphorylation // not recorded /// 0030217 // T cell differentiation // inferred from electronic annotation /// 0030217 // T cell differentiation // not recorded /// 0034097 // response to cytokine stimulus // inferred from electronic annotation /// 0034097 // response to cytokine stimulus // not recorded /// 0043029 // T cell homeostasis // inferred from electronic annotation /// 0043029 // T cell homeostasis // not recorded /// 0046716 // muscle cell homeostasis // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // not recorded /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0004723 // calcium-dependent protein serine/threonine phosphatase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from direct assay /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay 1387262_at NM_031119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031119.1 /DB_XREF=gi:13592088 /GEN=Ssb /FEA=FLmRNA /CNT=18 /TID=Rn.24494.1 /TIER=FL /STK=3 /UG=Rn.24494 /LL=81783 /DEF=Rattus norvegicus Sjogren syndrome antigen B (Ssb), mRNA. /PROD=Sjogren syndrome antigen B /FL=gb:NM_031119.1 NM_031119 Sjogren syndrome antigen B Ssb 81783 NM_031119 0006396 // RNA processing // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // not recorded 1387263_at NM_012624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012624.1 /DB_XREF=gi:6981359 /GEN=Pklr /FEA=FLmRNA /CNT=14 /TID=Rn.48821.1 /TIER=FL /STK=3 /UG=Rn.48821 /LL=24651 /DEF=Rattus norvegicus Pyruvate kinase, liver and RBC (Pklr), mRNA. /PROD=pyruvate kinase, liver and RBC /FL=gb:M11709.1 gb:NM_012624.1 gb:M17685.1 NM_012624 pyruvate kinase, liver and RBC Pklr 24651 NM_012624 0001666 // response to hypoxia // inferred from expression pattern /// 0005975 // carbohydrate metabolic process // inferred from direct assay /// 0006096 // glycolysis // inferred from direct assay /// 0006096 // glycolysis // inferred from electronic annotation /// 0006754 // ATP biosynthetic process // inferred from direct assay /// 0007584 // response to nutrient // inferred from expression pattern /// 0009408 // response to heat // inferred from direct assay /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010038 // response to metal ion // inferred from expression pattern /// 0010226 // response to lithium ion // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016310 // phosphorylation // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from direct assay /// 0033198 // response to ATP // inferred from direct assay /// 0042866 // pyruvate biosynthetic process // inferred from direct assay /// 0051591 // response to cAMP // inferred from direct assay /// 0051707 // response to other organism // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004743 // pyruvate kinase activity // inferred from direct assay /// 0004743 // pyruvate kinase activity // not recorded /// 0004743 // pyruvate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030955 // potassium ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387264_at NM_053806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053806.1 /DB_XREF=gi:16758649 /GEN=Kcnk6 /FEA=FLmRNA /CNT=11 /TID=Rn.43365.1 /TIER=FL /STK=3 /UG=Rn.43365 /LL=116491 /DEF=Rattus norvegicus potassium channel, subfamily K, member 6 (TWIK-2) (Kcnk6), mRNA. /PROD=potassium channel, subfamily K, member 6(TWIK-2) /FL=gb:NM_053806.1 gb:AF281304.1 NM_053806 potassium channel, subfamily K, member 6 Kcnk6 116491 NM_053806 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from direct assay /// 0005267 // potassium channel activity // inferred from electronic annotation 1387265_at NM_013126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013126.1 /DB_XREF=gi:6978760 /GEN=Dgkg /FEA=FLmRNA /CNT=16 /TID=Rn.10544.1 /TIER=FL /STK=3 /UG=Rn.10544 /LL=25666 /DEF=Rattus norvegicus Diacylglycerol kinase 3 (gamma) (Dgkg), mRNA. /PROD=diacylglycerol kinase 3 (gamma) /FL=gb:D38448.1 gb:NM_013126.1 NM_013126 diacylglycerol kinase, gamma Dgkg 25666 NM_013126 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // traceable author statement /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0048666 // neuron development // inferred from expression pattern 0000166 // nucleotide binding // inferred from electronic annotation /// 0004143 // diacylglycerol kinase activity // inferred from direct assay /// 0004143 // diacylglycerol kinase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387266_at NM_080905 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080905.1 /DB_XREF=gi:18266717 /GEN=Siah1a /FEA=FLmRNA /CNT=10 /TID=Rn.8220.1 /TIER=FL /STK=3 /UG=Rn.8220 /DEF=Rattus norvegicus seven in absentia 1A (Siah1a), mRNA. /PROD=seven in absentia 1A /FL=gb:AB067814.1 gb:NM_080905.1 gb:AF389476.1 NM_080905 seven in absentia 1A Siah1a 140941 NM_080905 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007141 // male meiosis I // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0009791 // post-embryonic development // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0030163 // protein catabolic process // not recorded /// 0040014 // regulation of multicellular organism growth // not recorded /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from direct assay /// 0030877 // beta-catenin destruction complex // not recorded /// 0030877 // beta-catenin destruction complex // inferred from sequence or structural similarity /// 0030877 // beta-catenin destruction complex // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1387267_at NM_031073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031073.1 /DB_XREF=gi:13592014 /GEN=Ntf3 /FEA=FLmRNA /CNT=9 /TID=Rn.9715.1 /TIER=FL /STK=3 /UG=Rn.9715 /LL=81737 /DEF=Rattus norvegicus neurotrophin-3 (HDNFNT-3) (Ntf3), mRNA. /PROD=neurotrophin-3 (HDNFNT-3) /FL=gb:M34643.1 gb:NM_031073.1 NM_031073 neurotrophin 3 Ntf3 81737 NM_031073 0007274 // neuromuscular synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0007399 // nervous system development // inferred from mutant phenotype /// 0007403 // glial cell fate determination // inferred from electronic annotation /// 0007403 // glial cell fate determination // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007422 // peripheral nervous system development // inferred from electronic annotation /// 0007422 // peripheral nervous system development // not recorded /// 0008544 // epidermis development // inferred from electronic annotation /// 0008544 // epidermis development // not recorded /// 0021675 // nerve development // inferred from electronic annotation /// 0021675 // nerve development // not recorded /// 0042490 // mechanoreceptor differentiation // inferred from electronic annotation /// 0042490 // mechanoreceptor differentiation // not recorded /// 0042552 // myelination // inferred from direct assay /// 0043523 // regulation of neuron apoptosis // inferred from electronic annotation /// 0043523 // regulation of neuron apoptosis // not recorded /// 0045687 // positive regulation of glial cell differentiation // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048484 // enteric nervous system development // inferred from electronic annotation /// 0048484 // enteric nervous system development // not recorded /// 0048666 // neuron development // inferred from electronic annotation /// 0048666 // neuron development // not recorded /// 0048699 // generation of neurons // inferred from electronic annotation /// 0048699 // generation of neurons // not recorded /// 0050804 // regulation of synaptic transmission // inferred from direct assay /// 0051145 // smooth muscle cell differentiation // inferred from electronic annotation /// 0051145 // smooth muscle cell differentiation // not recorded 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // not recorded /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded 0005102 // receptor binding // inferred from electronic annotation /// 0005165 // neurotrophin receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0048406 // nerve growth factor binding // inferred from mutant phenotype 1387268_at NM_031773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031773.1 /DB_XREF=gi:13929087 /GEN=Rpo1-2 /FEA=FLmRNA /CNT=7 /TID=Rn.29861.1 /TIER=FL /STK=3 /UG=Rn.29861 /LL=83582 /DEF=Rattus norvegicus RNA polymerase I (127 kDa subunit) (Rpo1-2), mRNA. /PROD=RNA polymerase I (127 kDa subunit) /FL=gb:AF025424.1 gb:NM_031773.1 NM_031773 polymerase (RNA) I polypeptide B Polr1b 83582 NM_031773 0006350 // transcription // inferred from electronic annotation /// 0007566 // embryo implantation // not recorded /// 0009303 // rRNA transcription // inferred from direct assay /// 0009303 // rRNA transcription // not recorded /// 0009790 // embryo development // not recorded /// 0017126 // nucleologenesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005736 // DNA-directed RNA polymerase I complex // inferred from direct assay /// 0005736 // DNA-directed RNA polymerase I complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from direct assay /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0032549 // ribonucleoside binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387269_s_at AF007789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF007789.1 /DB_XREF=gi:2253495 /FEA=FLmRNA /CNT=4 /TID=Rn.82711.1 /TIER=FL /STK=1 /UG=Rn.82711 /LL=171349 /UG_GENE=Plaur /DEF=Rattus norvegicus urokinase receptor mRNA, complete cds. /PROD=urokinase receptor /FL=gb:AF007789.1 AF007789 plasminogen activator, urokinase receptor Plaur 50692 NM_017350 /// NM_134352 0016255 // attachment of GPI anchor to protein // not recorded /// 0043403 // skeletal muscle tissue regeneration // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0046658 // anchored to plasma membrane // traceable author statement 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0030377 // U-plasminogen activator receptor activity // inferred from mutant phenotype /// 0030377 // U-plasminogen activator receptor activity // traceable author statement 1387270_at NM_024385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024385.1 /DB_XREF=gi:13242290 /GEN=Hhex /FEA=FLmRNA /CNT=9 /TID=Rn.12188.1 /TIER=FL /STK=3 /UG=Rn.12188 /LL=79237 /DEF=Rattus norvegicus hematopoietically expressed homeobox (Hhex), mRNA. /PROD=hematopoietically expressed homeobox /FL=gb:D86383.1 gb:NM_024385.1 NM_024385 hematopoietically expressed homeobox Hhex 79237 NM_024385 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001889 // liver development // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0002009 // morphogenesis of an epithelium // inferred from electronic annotation /// 0002009 // morphogenesis of an epithelium // not recorded /// 0002573 // myeloid leukocyte differentiation // inferred from electronic annotation /// 0002573 // myeloid leukocyte differentiation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // not recorded /// 0006406 // mRNA export from nucleus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007049 // cell cycle // not recorded /// 0007492 // endoderm development // inferred from electronic annotation /// 0007492 // endoderm development // not recorded /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0009611 // response to wounding // inferred from expression pattern /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016481 // negative regulation of transcription // inferred from direct assay /// 0016525 // negative regulation of angiogenesis // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // not recorded /// 0016973 // poly(A)+ mRNA export from nucleus // inferred from electronic annotation /// 0016973 // poly(A)+ mRNA export from nucleus // not recorded /// 0022027 // interkinetic nuclear migration // inferred from electronic annotation /// 0022027 // interkinetic nuclear migration // not recorded /// 0030097 // hemopoiesis // not recorded /// 0030097 // hemopoiesis // traceable author statement /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from direct assay /// 0030177 // positive regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0030183 // B cell differentiation // inferred from electronic annotation /// 0030183 // B cell differentiation // not recorded /// 0030878 // thyroid gland development // inferred from electronic annotation /// 0030878 // thyroid gland development // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0030948 // negative regulation of vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0030948 // negative regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0031016 // pancreas development // inferred from electronic annotation /// 0031016 // pancreas development // not recorded /// 0034504 // protein localization in nucleus // inferred from electronic annotation /// 0034504 // protein localization in nucleus // not recorded /// 0035050 // embryonic heart tube development // inferred from electronic annotation /// 0035050 // embryonic heart tube development // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048568 // embryonic organ development // inferred from electronic annotation /// 0048568 // embryonic organ development // not recorded /// 0060431 // primary lung bud formation // inferred from electronic annotation /// 0060431 // primary lung bud formation // not recorded /// 0061009 // bile duct development // inferred from electronic annotation /// 0061009 // bile duct development // not recorded /// 0061010 // gall bladder development // inferred from electronic annotation /// 0061010 // gall bladder development // not recorded /// 0061011 // hepatic duct development // inferred from electronic annotation /// 0061011 // hepatic duct development // not recorded /// 0061017 // hepatoblast differentiation // inferred from electronic annotation /// 0061017 // hepatoblast differentiation // not recorded /// 0070365 // hepatocyte differentiation // inferred from electronic annotation /// 0070365 // hepatocyte differentiation // not recorded /// 0071103 // DNA conformation change // inferred from electronic annotation /// 0071103 // DNA conformation change // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0032993 // protein-DNA complex // inferred from electronic annotation /// 0032993 // protein-DNA complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008190 // eukaryotic initiation factor 4E binding // inferred from electronic annotation /// 0008190 // eukaryotic initiation factor 4E binding // not recorded /// 0008301 // DNA bending activity // inferred from electronic annotation /// 0008301 // DNA bending activity // not recorded /// 0010843 // promoter binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016565 // general transcriptional repressor activity // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0070491 // transcription repressor binding // inferred from electronic annotation /// 0070491 // transcription repressor binding // not recorded 1387271_at NM_053674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053674.1 /DB_XREF=gi:16758485 /GEN=Phyh /FEA=FLmRNA /CNT=9 /TID=Rn.80832.1 /TIER=FL /STK=3 /UG=Rn.80832 /LL=114209 /DEF=Rattus norvegicus phytanoyl-CoA hydroxylase (Refsum disease) (Phyh), mRNA. /PROD=phytanoyl-CoA hydroxylase (Refsum disease) /FL=gb:AF121345.1 gb:NM_053674.1 NM_053674 phytanoyl-CoA 2-hydroxylase Phyh 114209 NM_053674 0001561 // fatty acid alpha-oxidation // not recorded /// 0001561 // fatty acid alpha-oxidation // traceable author statement /// 0001561 // fatty acid alpha-oxidation // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation 0003824 // catalytic activity // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048244 // phytanoyl-CoA dioxygenase activity // inferred from direct assay /// 0048244 // phytanoyl-CoA dioxygenase activity // inferred from electronic annotation 1387272_at NM_013223 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013223.1 /DB_XREF=gi:6981045 /GEN=Hri /FEA=FLmRNA /CNT=8 /TID=Rn.11158.1 /TIER=FL /STK=3 /UG=Rn.11158 /LL=27137 /DEF=Rattus norvegicus hemin-sensitive initiation factor 2a kinase (Hri), mRNA. /PROD=hemin-sensitive initiation factor 2a kinase /FL=gb:L27707.1 gb:NM_013223.1 NM_013223 eukaryotic translation initiation factor 2 alpha kinase 1 Eif2ak1 27137 NM_013223 0006413 // translational initiation // traceable author statement /// 0006417 // regulation of translation // not recorded /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006468 // protein phosphorylation // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006950 // response to stress // not recorded /// 0006950 // response to stress // inferred from sequence or structural similarity /// 0006950 // response to stress // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009605 // response to external stimulus // not recorded /// 0009605 // response to external stimulus // inferred from sequence or structural similarity /// 0009605 // response to external stimulus // inferred from electronic annotation /// 0010999 // regulation of eIF2 alpha phosphorylation by heme // inferred from electronic annotation /// 0010999 // regulation of eIF2 alpha phosphorylation by heme // not recorded /// 0016310 // phosphorylation // not recorded /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0045947 // negative regulation of translational initiation // traceable author statement /// 0046501 // protoporphyrinogen IX metabolic process // inferred from electronic annotation /// 0046501 // protoporphyrinogen IX metabolic process // not recorded /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from sequence or structural similarity /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046984 // regulation of hemoglobin biosynthetic process // not recorded /// 0046984 // regulation of hemoglobin biosynthetic process // inferred from electronic annotation /// 0046986 // negative regulation of hemoglobin biosynthetic process // not recorded /// 0046986 // negative regulation of hemoglobin biosynthetic process // inferred from sequence or structural similarity /// 0046986 // negative regulation of hemoglobin biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004694 // eukaryotic translation initiation factor 2alpha kinase activity // inferred from direct assay /// 0004694 // eukaryotic translation initiation factor 2alpha kinase activity // not recorded /// 0004694 // eukaryotic translation initiation factor 2alpha kinase activity // inferred from sequence or structural similarity /// 0004694 // eukaryotic translation initiation factor 2alpha kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0020037 // heme binding // not recorded /// 0020037 // heme binding // inferred from sequence or structural similarity /// 0020037 // heme binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation 1387273_at NM_013037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013037.1 /DB_XREF=gi:6981589 /GEN=Il1rl1 /FEA=FLmRNA /CNT=7 /TID=Rn.10072.1 /TIER=FL /STK=3 /UG=Rn.10072 /LL=25556 /DEF=Rattus norvegicus Interleukin 1 receptor-like 1 (Fos-responsive gene 1) (Il1rl1), mRNA. /PROD=Interleukin 1 receptor-like 1 (Fos-responsivegene 1) /FL=gb:NM_013037.1 gb:U04319.1 NM_013037 interleukin 1 receptor-like 1 Il1rl1 25556 NM_001127689 /// NM_013037 0007165 // signal transduction // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0045087 // innate immune response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // inferred from mutant phenotype /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031224 // intrinsic to membrane // inferred from electronic annotation 0002113 // interleukin-33 binding // not recorded /// 0002113 // interleukin-33 binding // inferred from electronic annotation /// 0002114 // interleukin-33 receptor activity // inferred from electronic annotation /// 0002114 // interleukin-33 receptor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004908 // interleukin-1 receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387274_at NM_012943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012943.1 /DB_XREF=gi:6978764 /GEN=Dlx5 /FEA=FLmRNA /CNT=7 /TID=Rn.11248.1 /TIER=FL /STK=3 /UG=Rn.11248 /LL=25431 /DEF=Rattus norvegicus Distal-less homeobox (Dlx5), mRNA. /PROD=distal-less homeobox /FL=gb:L24443.1 gb:NM_012943.1 NM_012943 distal-less homeobox 5 Dlx5 25431 NM_012943 0001503 // ossification // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0001649 // osteoblast differentiation // inferred from sequence or structural similarity /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001958 // endochondral ossification // inferred from sequence or structural similarity /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from sequence or structural similarity /// 0008283 // cell proliferation // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // inferred from mutant phenotype /// 0045941 // positive regulation of transcription // not recorded /// 0048646 // anatomical structure formation involved in morphogenesis // inferred from electronic annotation /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from sequence or structural similarity /// 0010843 // promoter binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1387275_at NM_053349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053349.1 /DB_XREF=gi:16758067 /GEN=Sox11 /FEA=FLmRNA /CNT=6 /TID=Rn.30027.1 /TIER=FL /STK=3 /UG=Rn.30027 /LL=84046 /DEF=Rattus norvegicus SRY-box containing gene 11 (Sox11), mRNA. /PROD=SRY-box containing gene 11 /FL=gb:NM_053349.1 NM_053349 SRY (sex determining region Y)-box 11 Sox11 84046 NM_053349 0001822 // kidney development // inferred from expression pattern /// 0006350 // transcription // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from expression pattern /// 0014003 // oligodendrocyte development // inferred from expression pattern /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0008135 // translation factor activity, nucleic acid binding // inferred from electronic annotation /// 0008135 // translation factor activity, nucleic acid binding // not recorded 1387276_at NM_021584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021584.1 /DB_XREF=gi:11024659 /GEN=Ania4 /FEA=FLmRNA /CNT=10 /TID=Rn.40517.1 /TIER=FL /STK=3 /UG=Rn.40517 /LL=59104 /DEF=Rattus norvegicus activity and neurotransmitter-induced early gene protein 4 (ania-4) (Ania4), mRNA. /PROD=activity and neurotransmitter-induced early geneprotein 4 (ania-4) /FL=gb:NM_021584.1 gb:AF030089.2 gb:AF045469.1 NM_021584 doublecortin-like kinase 1 Dclk1 83825 NM_021584 /// NM_053343 0001764 // neuron migration // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007420 // brain development // not recorded /// 0009615 // response to virus // not recorded /// 0021952 // central nervous system projection neuron axonogenesis // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0048675 // axon extension // not recorded /// 0048813 // dendrite morphogenesis // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387277_at NM_030857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030857.1 /DB_XREF=gi:13540676 /GEN=Lyn /FEA=FLmRNA /CNT=9 /TID=Rn.4338.1 /TIER=FL /STK=3 /UG=Rn.4338 /LL=81515 /DEF=Rattus norvegicus lyn protein non-receptor kinase (Lyn), mRNA. /PROD=lyn protein non-receptor kinase /FL=gb:NM_030857.1 gb:L14782.1 gb:AF000300.1 gb:L14951.1 NM_030857 v-yes-1 Yamaguchi sarcoma viral related oncogene homolog Lyn 81515 NM_001111098 /// NM_030857 0002553 // histamine secretion by mast cell // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0006991 // response to sterol depletion // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0009636 // response to toxin // inferred from expression pattern /// 0009725 // response to hormone stimulus // not recorded /// 0009725 // response to hormone stimulus // inferred from sequence or structural similarity /// 0009725 // response to hormone stimulus // inferred from electronic annotation /// 0009743 // response to carbohydrate stimulus // inferred from expression pattern /// 0014003 // oligodendrocyte development // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // not recorded /// 0030218 // erythrocyte differentiation // not recorded /// 0030218 // erythrocyte differentiation // inferred from sequence or structural similarity /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from electronic annotation /// 0031175 // neuron projection development // not recorded /// 0031668 // cellular response to extracellular stimulus // inferred from expression pattern /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0034605 // cellular response to heat // inferred from expression pattern /// 0042327 // positive regulation of phosphorylation // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0042531 // positive regulation of tyrosine phosphorylation of STAT protein // not recorded /// 0042531 // positive regulation of tyrosine phosphorylation of STAT protein // inferred from sequence or structural similarity /// 0042531 // positive regulation of tyrosine phosphorylation of STAT protein // inferred from electronic annotation /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0046777 // protein autophosphorylation // not recorded /// 0048678 // response to axon injury // inferred from expression pattern /// 0050663 // cytokine secretion // inferred from mutant phenotype /// 0050853 // B cell receptor signaling pathway // inferred from electronic annotation /// 0050853 // B cell receptor signaling pathway // not recorded /// 0051272 // positive regulation of cellular component movement // not recorded /// 0051279 // regulation of release of sequestered calcium ion into cytosol // inferred from mutant phenotype /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0060252 // positive regulation of glial cell proliferation // inferred from direct assay /// 0060369 // positive regulation of Fc receptor mediated stimulatory signaling pathway // inferred from mutant phenotype /// 0070304 // positive regulation of stress-activated protein kinase signaling cascade // not recorded /// 0070447 // positive regulation of oligodendrocyte progenitor proliferation // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030061 // mitochondrial crista // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0034666 // alpha2-beta1 integrin complex // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0045121 // membrane raft // inferred from direct assay /// 0045121 // membrane raft // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005161 // platelet-derived growth factor receptor binding // inferred from physical interaction /// 0005178 // integrin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded /// 0019899 // enzyme binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from physical interaction /// 0032403 // protein complex binding // not recorded /// 0032403 // protein complex binding // inferred from electronic annotation /// 0043015 // gamma-tubulin binding // inferred from direct assay /// 0043208 // glycosphingolipid binding // inferred from physical interaction /// 0051219 // phosphoprotein binding // inferred from physical interaction 1387278_at NM_013196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013196.1 /DB_XREF=gi:6981381 /GEN=Ppara /FEA=FLmRNA /CNT=8 /TID=Rn.9753.1 /TIER=FL /STK=3 /UG=Rn.9753 /LL=25747 /DEF=Rattus norvegicus Peroxisome proliferator activated receptor alpha (Ppara), mRNA. /PROD=peroxisome proliferator activated receptoralpha /FL=gb:NM_013196.1 gb:M88592.1 NM_013196 peroxisome proliferator activated receptor alpha Ppara 25747 NM_013196 0001666 // response to hypoxia // inferred from direct assay /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from mutant phenotype /// 0006631 // fatty acid metabolic process // not recorded /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007507 // heart development // inferred from expression pattern /// 0008544 // epidermis development // inferred from electronic annotation /// 0008544 // epidermis development // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010745 // negative regulation of macrophage derived foam cell differentiation // inferred from electronic annotation /// 0010745 // negative regulation of macrophage derived foam cell differentiation // not recorded /// 0010871 // negative regulation of receptor biosynthetic process // inferred from electronic annotation /// 0010871 // negative regulation of receptor biosynthetic process // not recorded /// 0010887 // negative regulation of cholesterol storage // inferred from electronic annotation /// 0010887 // negative regulation of cholesterol storage // not recorded /// 0010891 // negative regulation of sequestering of triglyceride // inferred from electronic annotation /// 0010891 // negative regulation of sequestering of triglyceride // not recorded /// 0019217 // regulation of fatty acid metabolic process // not recorded /// 0019217 // regulation of fatty acid metabolic process // traceable author statement /// 0019217 // regulation of fatty acid metabolic process // inferred from electronic annotation /// 0032099 // negative regulation of appetite // not recorded /// 0032099 // negative regulation of appetite // inferred from sequence or structural similarity /// 0032099 // negative regulation of appetite // inferred from electronic annotation /// 0032868 // response to insulin stimulus // inferred from mutant phenotype /// 0042060 // wound healing // inferred from electronic annotation /// 0042060 // wound healing // not recorded /// 0042157 // lipoprotein metabolic process // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046321 // positive regulation of fatty acid oxidation // inferred from electronic annotation /// 0046321 // positive regulation of fatty acid oxidation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003706 // ligand-regulated transcription factor activity // inferred from direct assay /// 0003707 // steroid hormone receptor activity // traceable author statement /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from mutant phenotype /// 0004879 // ligand-dependent nuclear receptor activity // not recorded /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008144 // drug binding // not recorded /// 0008144 // drug binding // inferred from sequence or structural similarity /// 0008144 // drug binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008289 // lipid binding // not recorded /// 0008289 // lipid binding // inferred from sequence or structural similarity /// 0008289 // lipid binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070215 // MDM2 binding // inferred from physical interaction 1387279_at NM_053796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053796.1 /DB_XREF=gi:16758635 /GEN=Jam1 /FEA=FLmRNA /CNT=8 /TID=Rn.16456.1 /TIER=FL /STK=3 /UG=Rn.16456 /LL=116479 /DEF=Rattus norvegicus junctional adhesion molecule 1 (Jam1), mRNA. /PROD=junctional adhesion molecule 1 /FL=gb:NM_053796.1 gb:AF276998.1 NM_053796 F11 receptor F11r 116479 NM_053796 0007155 // cell adhesion // not recorded /// 0030855 // epithelial cell differentiation // not recorded /// 0044419 // interspecies interaction between organisms // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005923 // tight junction // inferred from electronic annotation /// 0005923 // tight junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded 1387280_a_at NM_017353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017353.1 /DB_XREF=gi:8394404 /GEN=TA1 /FEA=FLmRNA /CNT=7 /TID=Rn.32261.1 /TIER=FL /STK=3 /UG=Rn.32261 /LL=50719 /DEF=Rattus norvegicus tumor-associated protein 1 (TA1), mRNA. /PROD=tumor-associated protein 1 /FL=gb:AB015432.1 gb:NM_017353.1 NM_017353 solute carrier family 7 (cationic amino acid transporter, y+ system), member 5 Slc7a5 50719 NM_017353 0003333 // amino acid transmembrane transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded /// 0006865 // amino acid transport // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0015804 // neutral amino acid transport // inferred from sequence or structural similarity /// 0015807 // L-amino acid transport // not recorded /// 0015807 // L-amino acid transport // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation 0015171 // amino acid transmembrane transporter activity // inferred from sequence or structural similarity /// 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015179 // L-amino acid transmembrane transporter activity // inferred from electronic annotation /// 0015179 // L-amino acid transmembrane transporter activity // not recorded /// 0042605 // peptide antigen binding // inferred from sequence or structural similarity 1387281_a_at D86556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D86556.1 /DB_XREF=gi:2077931 /FEA=FLmRNA /CNT=1 /TID=Rn.11178.2 /TIER=FL /STK=1 /UG=Rn.11178 /LL=29660 /UG_GENE=Camk1b /DEF=Rattus norvegicus mRNA for Protein Kinase, complete cds. /PROD=Protein Kinase /FL=gb:D86556.1 D86556 pregnancy upregulated non-ubiquitously expressed CaM kinase Pnck 29660 NM_017275 0006468 // protein phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005954 // calcium- and calmodulin-dependent protein kinase complex // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from direct assay /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387282_at NM_053612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053612.1 /DB_XREF=gi:16758407 /GEN=Cryac /FEA=FLmRNA /CNT=6 /TID=Rn.48843.1 /TIER=FL /STK=3 /UG=Rn.48843 /LL=113906 /DEF=Rattus norvegicus crystallin, alpha C (Cryac), mRNA. /PROD=crystallin, alpha C /FL=gb:AF314540.1 gb:NM_053612.1 NM_053612 heat shock protein B8 Hspb8 113906 NM_053612 0006950 // response to stress // inferred from electronic annotation /// 0009408 // response to heat // inferred from electronic annotation 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1387283_at NM_134350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134350.1 /DB_XREF=gi:19705454 /GEN=Mx3 /FEA=FLmRNA /CNT=5 /TID=Rn.82719.1 /TIER=FL /STK=3 /UG=Rn.82719 /LL=171342 /DEF=Rattus norvegicus myxovirus (influenza virus) resistance 3 (Mx3), mRNA. /PROD=myxovirus (influenza virus) resistance 3 /FL=gb:NM_134350.1 NM_134350 myxovirus (influenza virus) resistance 2 Mx2 286918 NM_134350 0009615 // response to virus // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1387284_at NM_031705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031705.1 /DB_XREF=gi:13928983 /GEN=Dpys /FEA=FLmRNA /CNT=5 /TID=Rn.10586.1 /TIER=FL /STK=3 /UG=Rn.10586 /LL=65135 /DEF=Rattus norvegicus dihydropyrimidinase (Dpys), mRNA. /PROD=dihydropyrimidinase /FL=gb:D63704.1 gb:NM_031705.1 NM_031705 dihydropyrimidinase Dpys 65135 NM_031705 0006208 // pyrimidine base catabolic process // not recorded /// 0006208 // pyrimidine base catabolic process // inferred from electronic annotation /// 0006210 // thymine catabolic process // inferred from direct assay /// 0006212 // uracil catabolic process // inferred from direct assay /// 0006212 // uracil catabolic process // not recorded /// 0006212 // uracil catabolic process // inferred from electronic annotation /// 0019482 // beta-alanine metabolic process // inferred from direct assay /// 0019860 // uracil metabolic process // inferred from direct assay /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051289 // protein homotetramerization // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded 0002058 // uracil binding // inferred from direct assay /// 0002059 // thymine binding // inferred from direct assay /// 0004157 // dihydropyrimidinase activity // inferred from direct assay /// 0004157 // dihydropyrimidinase activity // not recorded /// 0004157 // dihydropyrimidinase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from mutant phenotype /// 0016597 // amino acid binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387285_at NM_012508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012508.1 /DB_XREF=gi:6978556 /GEN=Atp2b2 /FEA=FLmRNA /CNT=14 /TID=Rn.11280.1 /TIER=FL /STK=1 /UG=Rn.11280 /LL=24215 /DEF=Rattus norvegicus ATPase isoform 2, Na+K+ transporting, beta polypeptide 2 (Atp2b2), mRNA. /PROD=ATPase isoform 2, Na+K+ transporting, betapolypeptide 2 /FL=gb:J03754.1 gb:NM_012508.1 NM_012508 ATPase, Ca++ transporting, plasma membrane 2 Atp2b2 24215 NM_012508 0000902 // cell morphogenesis // not recorded /// 0003407 // neural retina development // inferred from expression pattern /// 0006200 // ATP catabolic process // not recorded /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006996 // organelle organization // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0007595 // lactation // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0007605 // sensory perception of sound // inferred from sequence or structural similarity /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008361 // regulation of cell size // not recorded /// 0021549 // cerebellum development // not recorded /// 0021692 // cerebellar Purkinje cell layer morphogenesis // not recorded /// 0021702 // cerebellar Purkinje cell differentiation // not recorded /// 0021707 // cerebellar granule cell differentiation // not recorded /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from sequence or structural similarity /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0040011 // locomotion // not recorded /// 0042428 // serotonin metabolic process // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0045299 // otolith mineralization // not recorded /// 0046068 // cGMP metabolic process // not recorded /// 0048167 // regulation of synaptic plasticity // not recorded /// 0048839 // inner ear development // not recorded /// 0050808 // synapse organization // not recorded /// 0050885 // neuromuscular process controlling balance // not recorded /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // not recorded /// 0051928 // positive regulation of calcium ion transport // not recorded /// 0060088 // auditory receptor cell stereocilium organization // not recorded /// 0060113 // inner ear receptor cell differentiation // not recorded 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005792 // microsome // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005929 // cilium // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043025 // neuronal cell body // not recorded /// 0045121 // membrane raft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // inferred from direct assay /// 0005388 // calcium-transporting ATPase activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // not recorded /// 0005388 // calcium-transporting ATPase activity // inferred from sequence or structural similarity /// 0005388 // calcium-transporting ATPase activity // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // not recorded /// 0005516 // calmodulin binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008022 // protein C-terminus binding // inferred from sequence or structural similarity /// 0015085 // calcium ion transmembrane transporter activity // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0030165 // PDZ domain binding // not recorded /// 0030165 // PDZ domain binding // inferred from sequence or structural similarity /// 0030165 // PDZ domain binding // inferred from electronic annotation /// 0030899 // calcium-dependent ATPase activity // not recorded /// 0035254 // glutamate receptor binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1387286_at NM_017011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017011.1 /DB_XREF=gi:8393486 /GEN=Grm1 /FEA=FLmRNA /CNT=7 /TID=Rn.10261.1 /TIER=FL /STK=3 /UG=Rn.10261 /LL=24414 /DEF=Rattus norvegicus Glutamate receptor, metabotropic 1 (Grm1), mRNA. /PROD=glutamate receptor, metabotropic 1 /FL=gb:NM_017011.1 gb:M61099.1 NM_017011 glutamate receptor, metabotropic 1 Grm1 24414 NM_001114330 /// NM_017011 0000186 // activation of MAPKK activity // inferred from electronic annotation /// 0000186 // activation of MAPKK activity // not recorded /// 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007206 // activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway // traceable author statement /// 0007268 // synaptic transmission // inferred from expression pattern /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0014048 // regulation of glutamate secretion // traceable author statement /// 0019233 // sensory perception of pain // inferred from expression pattern /// 0019233 // sensory perception of pain // not recorded /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from direct assay /// 0043408 // regulation of MAPKKK cascade // inferred from electronic annotation /// 0043408 // regulation of MAPKKK cascade // not recorded /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // traceable author statement /// 0051899 // membrane depolarization // traceable author statement /// 0051930 // regulation of sensory perception of pain // inferred from electronic annotation /// 0051930 // regulation of sensory perception of pain // not recorded /// 0051932 // synaptic transmission, GABAergic // traceable author statement /// 0051966 // regulation of synaptic transmission, glutamatergic // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // not recorded /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0001639 // PLC activating metabotropic glutamate receptor activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008066 // glutamate receptor activity // traceable author statement 1387287_a_at D83598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D83598.1 /DB_XREF=gi:1377794 /FEA=FLmRNA /CNT=1 /TID=Rn.10528.2 /TIER=FL /STK=1 /UG=Rn.10528 /LL=25560 /UG_GENE=Abcc9 /DEF=Rattus norvegicus mRNA for sulfonylurea receptor, complete cds. /PROD=sulfonylurea receptor /FL=gb:D83598.1 D83598 ATP-binding cassette, sub-family C (CFTR/MRP), member 9 /// ATP-binding cassette, sub-family C, member 9-like Abcc9 /// LOC100360403 100360403 /// 25560 NM_013040 /// XM_002729420 0006810 // transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006932 // substrate-dependent cell migration, cell contraction // non-traceable author statement /// 0010107 // potassium ion import // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0051607 // defense response to virus // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0008282 // ATP-sensitive potassium channel complex // inferred from direct assay /// 0008282 // ATP-sensitive potassium channel complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030017 // sarcomere // not recorded /// 0030315 // T-tubule // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0008281 // sulfonylurea receptor activity // inferred from direct assay /// 0008281 // sulfonylurea receptor activity // traceable author statement /// 0008281 // sulfonylurea receptor activity // inferred from electronic annotation /// 0015459 // potassium channel regulator activity // inferred from direct assay /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0019905 // syntaxin binding // inferred from physical interaction /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 1387288_at NM_019218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019218.1 /DB_XREF=gi:9506914 /GEN=Neurod1 /FEA=FLmRNA /CNT=7 /TID=Rn.44289.1 /TIER=FL /STK=3 /UG=Rn.44289 /LL=29458 /DEF=Rattus norvegicus neurogenic differentiation 1 (Neurod1), mRNA. /PROD=neurogenic differentiation 1 /FL=gb:NM_019218.1 gb:AF107728.1 gb:D82945.1 NM_019218 neurogenic differentiation 1 Neurod1 29458 NM_019218 0003326 // pancreatic A cell fate commitment // inferred from electronic annotation /// 0003326 // pancreatic A cell fate commitment // not recorded /// 0003329 // pancreatic PP cell fate commitment // inferred from electronic annotation /// 0003329 // pancreatic PP cell fate commitment // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007263 // nitric oxide mediated signal transduction // inferred from electronic annotation /// 0007263 // nitric oxide mediated signal transduction // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from electronic annotation /// 0009749 // response to glucose stimulus // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0021549 // cerebellum development // inferred from expression pattern /// 0030073 // insulin secretion // inferred from electronic annotation /// 0030073 // insulin secretion // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030902 // hindbrain development // inferred from electronic annotation /// 0030902 // hindbrain development // not recorded /// 0031018 // endocrine pancreas development // inferred from electronic annotation /// 0031018 // endocrine pancreas development // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042593 // glucose homeostasis // not recorded /// 0043010 // camera-type eye development // inferred from electronic annotation /// 0043010 // camera-type eye development // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from direct assay /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048562 // embryonic organ morphogenesis // inferred from electronic annotation /// 0048562 // embryonic organ morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0044424 // intracellular part // not recorded /// 0044424 // intracellular part // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1387289_at NM_031780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031780.1 /DB_XREF=gi:13929101 /GEN=Apba2 /FEA=FLmRNA /CNT=6 /TID=Rn.62687.1 /TIER=FL /STK=3 /UG=Rn.62687 /LL=83610 /DEF=Rattus norvegicus amyloid beta (A4) precursor protein-binding, family A, member 2 (X11-like) (Apba2), mRNA. /PROD=amyloid beta (A4) precursor protein-binding,family A, member 2 (X11-like) /FL=gb:NM_031780.1 gb:AF029107.1 NM_031780 amyloid beta (A4) precursor protein-binding, family A, member 2 Apba2 83610 NM_031780 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016079 // synaptic vesicle exocytosis // traceable author statement /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded 0005886 // plasma membrane // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // non-traceable author statement 1387290_at NM_130742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130742.1 /DB_XREF=gi:18543346 /GEN=Galnt9 /FEA=FLmRNA /CNT=6 /TID=Rn.42123.1 /TIER=FL /STK=3 /UG=Rn.42123 /LL=170501 /DEF=Rattus norvegicus UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 9 (Galnt9), mRNA. /PROD=UDP-N-acetyl-alpha-D-galactosamine: polypeptideN-acetylgalactosaminyltransferase 9 /FL=gb:NM_130742.1 gb:AF241241.1 NM_130742 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10) Galnt10 170501 NM_130742 0006493 // protein O-linked glycosylation // inferred from electronic annotation /// 0006493 // protein O-linked glycosylation // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // not recorded /// 0005529 // sugar binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387291_at NM_017351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017351.1 /DB_XREF=gi:8393898 /GEN=PAIHC3 /FEA=FLmRNA /CNT=5 /TID=Rn.10391.1 /TIER=FL /STK=3 /UG=Rn.10391 /LL=50693 /DEF=Rattus norvegicus pre-alpha-inhibitor, heavy chain 3 (PAIHC3), mRNA. /PROD=pre-alpha-inhibitor, heavy chain 3 /FL=gb:NM_017351.1 NM_017351 inter-alpha trypsin inhibitor, heavy chain 3 Itih3 50693 NM_017351 0030212 // hyaluronan metabolic process // inferred from electronic annotation 0005576 // extracellular region // traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1387292_s_at NM_133309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133309.1 /DB_XREF=gi:18959253 /GEN=Capn8 /FEA=FLmRNA /CNT=5 /TID=Rn.80837.1 /TIER=FL /STK=3 /UG=Rn.80837 /DEF=Rattus norvegicus calpain 8 (Capn8), mRNA. /PROD=calpain 8 /FL=gb:D14478.1 gb:NM_133309.1 NM_133309 calpain 8 Capn8 170808 NM_133309 0006508 // proteolysis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387293_at NM_031150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031150.1 /DB_XREF=gi:13592142 /GEN=Zp2 /FEA=FLmRNA /CNT=5 /TID=Rn.10891.1 /TIER=FL /STK=3 /UG=Rn.10891 /LL=81828 /DEF=Rattus norvegicus zona pellucida 2 glycoprotein (Zp2), mRNA. /PROD=zona pellucida 2 glycoprotein /FL=gb:NM_031150.1 gb:AB000929.1 NM_031150 zona pellucida glycoprotein 2 (sperm receptor) Zp2 81828 NM_031150 0007338 // single fertilization // inferred from electronic annotation /// 0007339 // binding of sperm to zona pellucida // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0032190 // acrosin binding // not recorded 1387294_at NM_054011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_054011.1 /DB_XREF=gi:16758933 /GEN=Sh3bp5 /FEA=FLmRNA /CNT=4 /TID=Rn.28667.1 /TIER=FL /STK=3 /UG=Rn.28667 /LL=117186 /DEF=Rattus norvegicus SH3-domain binding protein 5 (BTK-associated) (Sh3bp5), mRNA. /PROD=SH3-domain binding protein 5 (BTK-associated) /FL=gb:NM_054011.1 gb:AB027562.1 NM_054011 SH3-domain binding protein 5 (BTK-associated) Sh3bp5 117186 NM_054011 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0007254 // JNK cascade // non-traceable author statement /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0004860 // protein kinase inhibitor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // traceable author statement /// 0017124 // SH3 domain binding // inferred from electronic annotation 1387295_at NM_017335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017335.1 /DB_XREF=gi:8394199 /GEN=RNU28927 /FEA=FLmRNA /CNT=4 /TID=Rn.11352.1 /TIER=FL /STK=3 /UG=Rn.11352 /LL=50676 /DEF=Rattus norvegicus GABA transporter (RNU28927), mRNA. /PROD=GABA transporter /FL=gb:NM_017335.1 gb:U28927.1 NM_017335 solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12 Slc6a12 50676 NM_017335 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // traceable author statement /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded /// 0009992 // cellular water homeostasis // inferred from direct assay /// 0010033 // response to organic substance // inferred from expression pattern /// 0071474 // cellular hyperosmotic response // inferred from expression pattern 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0005332 // gamma-aminobutyric acid:sodium symporter activity // traceable author statement /// 0005332 // gamma-aminobutyric acid:sodium symporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation 1387296_at NM_023025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023025.1 /DB_XREF=gi:12711695 /GEN=Cyp2j4 /FEA=FLmRNA /CNT=4 /TID=Rn.44992.1 /TIER=FL /STK=3 /UG=Rn.44992 /LL=65210 /DEF=Rattus norvegicus CYP2J4 (Cyp2j4), mRNA. /PROD=CYP2J4 /FL=gb:NM_023025.1 gb:L81170.1 NM_023025 cytochrome P450, family 2, subfamily j, polypeptide 4 Cyp2j4 65210 NM_023025 0001523 // retinoid metabolic process // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019369 // arachidonic acid metabolic process // inferred from direct assay /// 0019373 // epoxygenase P450 pathway // not recorded /// 0043651 // linoleic acid metabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded 0003958 // NADPH-hemoprotein reductase activity // inferred from direct assay /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008392 // arachidonic acid epoxygenase activity // not recorded /// 0008404 // arachidonic acid 14,15-epoxygenase activity // not recorded /// 0008405 // arachidonic acid 11,12-epoxygenase activity // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0071614 // linoleic acid epoxygenase activity // not recorded 1387297_at NM_031649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031649.1 /DB_XREF=gi:13928897 /GEN=Klrg1 /FEA=FLmRNA /CNT=4 /TID=Rn.10256.1 /TIER=FL /STK=3 /UG=Rn.10256 /LL=58975 /DEF=Rattus norvegicus killer cell lectin-like receptor subfamily G, member 1 (Klrg1), mRNA. /PROD=killer cell lectin-like receptor subfamily G,member 1 /FL=gb:NM_031649.1 NM_031649 killer cell lectin-like receptor subfamily G, member 1 Klrg1 58975 NM_031649 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from direct assay /// 0005529 // sugar binding // inferred from electronic annotation 1387298_at NM_021753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021753.1 /DB_XREF=gi:11120701 /GEN=Pepf /FEA=FLmRNA /CNT=4 /TID=Rn.43875.1 /TIER=FL /STK=3 /UG=Rn.43875 /LL=60372 /DEF=Rattus norvegicus pepsinogen F protein (Pepf), mRNA. /PROD=pepsinogen F protein /FL=gb:NM_021753.1 NM_021753 pepsinogen 5, group I Pga5 60372 NM_021753 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0004190 // aspartic-type endopeptidase activity // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387299_at NM_053337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053337.1 /DB_XREF=gi:16758049 /GEN=Miz1 /FEA=FLmRNA /CNT=6 /TID=Rn.25546.1 /TIER=FL /STK=3 /UG=Rn.25546 /LL=83422 /DEF=Rattus norvegicus Msx-interacting-zinc finger (Miz1), mRNA. /PROD=Msx-interacting-zinc finger /FL=gb:AF044058.1 gb:NM_053337.1 NM_053337 protein inhibitor of activated STAT, 2 Pias2 83422 NM_053337 0006350 // transcription // inferred from electronic annotation /// 0006351 // transcription, DNA-dependent // not recorded /// 0007283 // spermatogenesis // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016925 // protein sumoylation // not recorded /// 0030521 // androgen receptor signaling pathway // inferred from mutant phenotype /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045667 // regulation of osteoblast differentiation // not recorded /// 0045941 // positive regulation of transcription // inferred from mutant phenotype /// 0050775 // positive regulation of dendrite morphogenesis // inferred from mutant phenotype /// 0060765 // regulation of androgen receptor signaling pathway // inferred from direct assay /// 0060766 // negative regulation of androgen receptor signaling pathway // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0016604 // nuclear body // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0019789 // SUMO ligase activity // not recorded /// 0030331 // estrogen receptor binding // inferred from physical interaction /// 0035259 // glucocorticoid receptor binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // inferred from physical interaction 1387300_at NM_053797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053797.1 /DB_XREF=gi:16758637 /GEN=Crn /FEA=FLmRNA /CNT=4 /TID=Rn.35123.1 /TIER=FL /STK=3 /UG=Rn.35123 /LL=116481 /DEF=Rattus norvegicus crooked neck protein (Crn), mRNA. /PROD=crooked neck protein /FL=gb:NM_053797.1 gb:AF245018.1 NM_053797 crooked neck pre-mRNA splicing factor-like 1 (Drosophila) Crnkl1 116481 NM_053797 0000245 // spliceosome assembly // not recorded /// 0000245 // spliceosome assembly // inferred from sequence or structural similarity /// 0000245 // spliceosome assembly // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded /// 0005681 // spliceosomal complex // inferred from sequence or structural similarity /// 0005681 // spliceosomal complex // inferred from electronic annotation 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1387301_at NM_012846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012846.1 /DB_XREF=gi:6978838 /GEN=Fgf1 /FEA=FLmRNA /CNT=4 /TID=Rn.10466.1 /TIER=FL /STK=3 /UG=Rn.10466 /LL=25317 /DEF=Rattus norvegicus Fibroblast growth factor 1 (heparin binding) (Fgf1), mRNA. /PROD=fibroblast growth factor 1 (heparin binding) /FL=gb:NM_012846.1 NM_012846 fibroblast growth factor 1 Fgf1 25317 NM_012846 0001525 // angiogenesis // inferred from electronic annotation /// 0001759 // organ induction // inferred from electronic annotation /// 0001759 // organ induction // not recorded /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0034605 // cellular response to heat // not recorded /// 0034605 // cellular response to heat // inferred from sequence or structural similarity /// 0034605 // cellular response to heat // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // inferred from direct assay /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation 0005104 // fibroblast growth factor receptor binding // inferred from electronic annotation /// 0005104 // fibroblast growth factor receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0048155 // S100 alpha binding // inferred from electronic annotation /// 0048155 // S100 alpha binding // not recorded 1387302_at D16465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D16465.1 /DB_XREF=gi:440381 /FEA=FLmRNA /CNT=11 /TID=Rn.9917.1 /TIER=FL /STK=1 /UG=Rn.9917 /LL=24167 /UG_GENE=Adcyap1r1 /DEF=Rat mRNA for receptor for pituitary adenylate cyclase activating polypeptide (PACAP receptor), complete cds. /PROD=PACAP receptor precursor /FL=gb:L16680.1 gb:D16465.1 gb:Z23275.1 gb:Z23274.1 gb:Z23273.1 gb:NM_133511.1 gb:Z23282.1 gb:D14909.1 D16465 adenylate cyclase activating polypeptide 1 receptor 1 Adcyap1r1 24167 NM_133511 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007190 // activation of adenylate cyclase activity // not recorded /// 0007202 // activation of phospholipase C activity // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from mutant phenotype /// 0019933 // cAMP-mediated signaling // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from direct assay /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0033555 // multicellular organismal response to stress // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0046545 // development of primary female sexual characteristics // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0060548 // negative regulation of cell death // inferred from direct assay /// 0060732 // positive regulation of inositol phosphate biosynthetic process // inferred from direct assay 0000139 // Golgi membrane // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0005923 // tight junction // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay 0001634 // pituitary adenylate cyclase-activating polypeptide receptor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004999 // vasoactive intestinal polypeptide receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0008179 // adenylate cyclase binding // inferred from direct assay /// 0042923 // neuropeptide binding // inferred from direct assay 1387303_at NM_031584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031584.1 /DB_XREF=gi:13994170 /GEN=Slc22a2 /FEA=FLmRNA /CNT=5 /TID=Rn.10555.1 /TIER=FL /STK=3 /UG=Rn.10555 /LL=29503 /DEF=Rattus norvegicus solute carrier family 22, member 2 (Slc22a2), mRNA. /PROD=solute carrier family 22, member 2 /FL=gb:D83044.1 gb:NM_031584.1 NM_031584 solute carrier family 22 (organic cation transporter), member 2 Slc22a2 29503 NM_031584 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0015695 // organic cation transport // not recorded /// 0015695 // organic cation transport // traceable author statement /// 0015697 // quaternary ammonium group transport // inferred from direct assay /// 0034220 // ion transmembrane transport // not recorded /// 0051608 // histamine transport // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0005326 // neurotransmitter transporter activity // not recorded /// 0005496 // steroid binding // inferred from direct assay /// 0008513 // secondary active organic cation transmembrane transporter activity // inferred from direct assay /// 0015075 // ion transmembrane transporter activity // inferred from electronic annotation /// 0015101 // organic cation transmembrane transporter activity // not recorded /// 0015101 // organic cation transmembrane transporter activity // traceable author statement /// 0015220 // choline transmembrane transporter activity // inferred from direct assay /// 0015651 // quaternary ammonium group transmembrane transporter activity // inferred from direct assay 1387304_at NM_020537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020537.1 /DB_XREF=gi:10120495 /GEN=Senr /FEA=FLmRNA /CNT=5 /TID=Rn.44230.1 /TIER=FL /STK=3 /UG=Rn.44230 /LL=57305 /DEF=Rattus norvegicus putative G protein-coupled receptor (SENR) gene (Senr), mRNA. /PROD=putative G protein-coupled receptor (SENR) gene /FL=gb:NM_020537.1 gb:AB029611.1 gb:AB012210.1 NM_020537 urotensin 2 receptor Uts2r 57305 NM_020537 0003077 // negative regulation of diuresis // inferred from mutant phenotype /// 0003080 // negative regulation of natriuresis // inferred from mutant phenotype /// 0003105 // negative regulation of glomerular filtration // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0010841 // positive regulation of circadian sleep/wake cycle, wakefulness // inferred from mutant phenotype /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0045777 // positive regulation of blood pressure // inferred from mutant phenotype /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype /// 0046005 // positive regulation of circadian sleep/wake cycle, REM sleep // inferred from mutant phenotype /// 0048146 // positive regulation of fibroblast proliferation // inferred from mutant phenotype 0005769 // early endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from direct assay 0001604 // urotensin II receptor activity // inferred from direct assay /// 0001604 // urotensin II receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1387305_s_at NM_012539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012539.1 /DB_XREF=gi:6978728 /GEN=Cyp11b@ /FEA=FLmRNA /CNT=6 /TID=Rn.32084.1 /TIER=FL /STK=3 /UG=Rn.32084 /LL=24295 /DEF=Rattus norvegicus Cytochrome P450, subfamily XIB gene cluster (Cyp11b@), mRNA. /PROD=cytochrome P450, subfamily XIB gene cluster /FL=gb:D10107.1 gb:NM_012539.1 gb:D11354.1 NM_012539 cytochrome P450, family 11, subfamily b, polypeptide 1 /// cytochrome P450, family 11, subfamily b, polypeptide 2 Cyp11b1 /// Cyp11b2 24294 /// 500892 NM_012537 /// NM_012538 0001991 // regulation of systemic arterial blood pressure by circulatory renin-angiotensin // inferred from electronic annotation /// 0001991 // regulation of systemic arterial blood pressure by circulatory renin-angiotensin // not recorded /// 0002017 // regulation of blood volume by renal aldosterone // inferred from electronic annotation /// 0002017 // regulation of blood volume by renal aldosterone // not recorded /// 0006694 // steroid biosynthetic process // not recorded /// 0006694 // steroid biosynthetic process // inferred from direct assay /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006700 // C21-steroid hormone biosynthetic process // inferred from direct assay /// 0006700 // C21-steroid hormone biosynthetic process // not recorded /// 0006704 // glucocorticoid biosynthetic process // not recorded /// 0008202 // steroid metabolic process // traceable author statement /// 0008202 // steroid metabolic process // inferred from mutant phenotype /// 0008211 // glucocorticoid metabolic process // traceable author statement /// 0008217 // regulation of blood pressure // not recorded /// 0009651 // response to salt stress // inferred from expression pattern /// 0032342 // aldosterone biosynthetic process // inferred from electronic annotation /// 0032342 // aldosterone biosynthetic process // not recorded /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0034651 // cortisol biosynthetic process // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042756 // drinking behavior // inferred from electronic annotation /// 0042756 // drinking behavior // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045777 // positive regulation of blood pressure // inferred from mutant phenotype /// 0050801 // ion homeostasis // inferred from electronic annotation /// 0050801 // ion homeostasis // not recorded /// 0055075 // potassium ion homeostasis // not recorded /// 0055078 // sodium ion homeostasis // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004507 // steroid 11-beta-monooxygenase activity // inferred from direct assay /// 0004507 // steroid 11-beta-monooxygenase activity // not recorded /// 0004507 // steroid 11-beta-monooxygenase activity // inferred from electronic annotation /// 0005496 // steroid binding // inferred from direct assay /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008395 // steroid hydroxylase activity // inferred from mutant phenotype /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047783 // corticosterone 18-monooxygenase activity // inferred from direct assay /// 0047783 // corticosterone 18-monooxygenase activity // not recorded /// 0047783 // corticosterone 18-monooxygenase activity // inferred from electronic annotation 1387306_a_at NM_053633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053633.1 /DB_XREF=gi:16758439 /GEN=Egr2 /FEA=FLmRNA /CNT=5 /TID=Rn.10625.1 /TIER=FL /STK=3 /UG=Rn.10625 /LL=114090 /DEF=Rattus norvegicus early growth response 2 (Egr2), mRNA. /PROD=early growth response 2 /FL=gb:AB032420.1 gb:NM_053633.1 gb:U78102.1 gb:D83508.1 NM_053633 early growth response 2 Egr2 114090 NM_053633 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007611 // learning or memory // inferred from expression pattern /// 0007622 // rhythmic behavior // inferred from electronic annotation /// 0007622 // rhythmic behavior // not recorded /// 0008045 // motor axon guidance // inferred from electronic annotation /// 0008045 // motor axon guidance // not recorded /// 0014037 // Schwann cell differentiation // inferred from electronic annotation /// 0014037 // Schwann cell differentiation // not recorded /// 0021569 // rhombomere 3 development // inferred from electronic annotation /// 0021569 // rhombomere 3 development // not recorded /// 0021612 // facial nerve structural organization // inferred from electronic annotation /// 0021612 // facial nerve structural organization // not recorded /// 0021660 // rhombomere 3 formation // inferred from electronic annotation /// 0021660 // rhombomere 3 formation // not recorded /// 0021666 // rhombomere 5 formation // inferred from electronic annotation /// 0021666 // rhombomere 5 formation // not recorded /// 0030278 // regulation of ossification // inferred from electronic annotation /// 0030278 // regulation of ossification // not recorded /// 0032868 // response to insulin stimulus // inferred from mutant phenotype /// 0035284 // brain segmentation // inferred from electronic annotation /// 0035284 // brain segmentation // not recorded /// 0042552 // myelination // inferred from electronic annotation /// 0042552 // myelination // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048168 // regulation of neuronal synaptic plasticity // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1387307_at NM_017159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017159.1 /DB_XREF=gi:8393521 /GEN=Hal /FEA=FLmRNA /CNT=5 /TID=Rn.10037.1 /TIER=FL /STK=3 /UG=Rn.10037 /LL=29301 /DEF=Rattus norvegicus histidine ammonia lyase (Hal), mRNA. /PROD=histidine ammonia lyase /FL=gb:NM_017159.1 gb:M58308.1 NM_017159 histidine ammonia lyase Hal 29301 NM_017159 0006547 // histidine metabolic process // traceable author statement /// 0006547 // histidine metabolic process // inferred from electronic annotation /// 0006548 // histidine catabolic process // inferred from electronic annotation /// 0006548 // histidine catabolic process // not recorded /// 0009058 // biosynthetic process // inferred from electronic annotation 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004397 // histidine ammonia-lyase activity // inferred from direct assay /// 0004397 // histidine ammonia-lyase activity // not recorded /// 0004397 // histidine ammonia-lyase activity // traceable author statement /// 0004397 // histidine ammonia-lyase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016841 // ammonia-lyase activity // inferred from electronic annotation 1387308_at NM_017001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017001.1 /DB_XREF=gi:8393315 /GEN=Epo /FEA=FLmRNA /CNT=5 /TID=Rn.11365.1 /TIER=FL /STK=3 /UG=Rn.11365 /LL=24335 /DEF=Rattus norvegicus Erythropoietin (Epo), mRNA. /PROD=erythropoietin /FL=gb:D10763.1 gb:NM_017001.1 NM_017001 erythropoietin Epo 24335 NM_017001 0001666 // response to hypoxia // inferred from expression pattern /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // traceable author statement /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007566 // embryo implantation // inferred from electronic annotation /// 0007566 // embryo implantation // not recorded /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0009651 // response to salt stress // inferred from expression pattern /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033189 // response to vitamin A // inferred from expression pattern /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0042523 // positive regulation of tyrosine phosphorylation of Stat5 protein // inferred from electronic annotation /// 0042523 // positive regulation of tyrosine phosphorylation of Stat5 protein // not recorded /// 0042541 // hemoglobin biosynthetic process // inferred from electronic annotation /// 0042541 // hemoglobin biosynthetic process // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043249 // erythrocyte maturation // inferred from electronic annotation /// 0043526 // neuroprotection // inferred from mutant phenotype /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045666 // positive regulation of neuron differentiation // inferred from direct assay /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0048678 // response to axon injury // inferred from expression pattern /// 0051602 // response to electrical stimulus // inferred from expression pattern /// 0055093 // response to hyperoxia // inferred from expression pattern /// 0070555 // response to interleukin-1 // inferred from expression pattern 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation 0005128 // erythropoietin receptor binding // traceable author statement /// 0005128 // erythropoietin receptor binding // inferred from electronic annotation /// 0005179 // hormone activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387309_a_at AI111480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111480 /DB_XREF=gi:3511522 /DB_XREF=UI-R-Y0-lz-f-10-0-UI.s1 /CLONE=UI-R-Y0-lz-f-10-0-UI /FEA=mRNA /CNT=2 /TID=Rn.10449.3 /TIER=ConsEnd /STK=1 /UG=Rn.10449 /LL=29559 /UG_GENE=Grik1 /UG_TITLE=Glutamate receptor, ionotropic, kainate 1 AI111480 glutamate receptor, ionotropic, kainate 1 Grik1 29559 NM_001111114 /// NM_001111117 /// NM_017241 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007268 // synaptic transmission // traceable author statement /// 0007399 // nervous system development // inferred from mutant phenotype /// 0014054 // positive regulation of gamma-aminobutyric acid secretion // inferred from electronic annotation /// 0014054 // positive regulation of gamma-aminobutyric acid secretion // not recorded /// 0030534 // adult behavior // inferred from electronic annotation /// 0030534 // adult behavior // not recorded /// 0032229 // negative regulation of synaptic transmission, GABAergic // inferred from direct assay /// 0032230 // positive regulation of synaptic transmission, GABAergic // inferred from direct assay /// 0032230 // positive regulation of synaptic transmission, GABAergic // not recorded /// 0032230 // positive regulation of synaptic transmission, GABAergic // inferred from electronic annotation /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from direct assay /// 0035249 // synaptic transmission, glutamatergic // not recorded /// 0035249 // synaptic transmission, glutamatergic // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // traceable author statement /// 0048172 // regulation of short-term neuronal synaptic plasticity // inferred from direct assay /// 0048266 // behavioral response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // not recorded /// 0051899 // membrane depolarization // not recorded /// 0051899 // membrane depolarization // inferred from electronic annotation /// 0051967 // negative regulation of synaptic transmission, glutamatergic // inferred from direct assay /// 0051967 // negative regulation of synaptic transmission, glutamatergic // not recorded /// 0051967 // negative regulation of synaptic transmission, glutamatergic // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded /// 0060080 // regulation of inhibitory postsynaptic membrane potential // inferred from electronic annotation /// 0060080 // regulation of inhibitory postsynaptic membrane potential // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0008328 // ionotropic glutamate receptor complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0030425 // dendrite // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0032983 // kainate selective glutamate receptor complex // inferred from electronic annotation /// 0032983 // kainate selective glutamate receptor complex // not recorded /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0042734 // presynaptic membrane // not recorded /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043235 // receptor complex // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from direct assay /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from direct assay /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008144 // drug binding // inferred from direct assay /// 0015277 // kainate selective glutamate receptor activity // inferred from direct assay /// 0015277 // kainate selective glutamate receptor activity // not recorded /// 0015277 // kainate selective glutamate receptor activity // inferred from electronic annotation /// 0016595 // glutamate binding // inferred from direct assay /// 0022843 // voltage-gated cation channel activity // inferred from mutant phenotype /// 0042803 // protein homodimerization activity // inferred from direct assay 1387310_at NM_134462 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134462.1 /DB_XREF=gi:19745191 /GEN=Spca2 /FEA=FLmRNA /CNT=4 /TID=Rn.47804.1 /TIER=FL /STK=3 /UG=Rn.47804 /DEF=Rattus norvegicus putative secretory pathway Ca-ATPase SPCA2 (Spca2), mRNA. /PROD=putative secretory pathway Ca-ATPase SPCA2 /FL=gb:AF484685.1 gb:NM_134462.1 NM_134462 ATPase, Ca++ transporting, type 2C, member 2 Atp2c2 171496 NM_134462 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387311_at NM_053683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053683.1 /DB_XREF=gi:16758499 /GEN=Nox1 /FEA=FLmRNA /CNT=4 /TID=Rn.46714.1 /TIER=FL /STK=3 /UG=Rn.46714 /LL=114243 /DEF=Rattus norvegicus NADHNADPH mitogenic oxidase subunit p65-mox (Nox1), mRNA. /PROD=NADHNADPH mitogenic oxidase subunit p65-mox /FL=gb:NM_053683.1 gb:AF152963.1 NM_053683 NADPH oxidase 1 Nox1 114243 NM_053683 0000302 // response to reactive oxygen species // inferred from direct assay /// 0001525 // angiogenesis // not recorded /// 0003081 // regulation of systemic arterial blood pressure by renin-angiotensin // not recorded /// 0006800 // oxygen and reactive oxygen species metabolic process // inferred from mutant phenotype /// 0006800 // oxygen and reactive oxygen species metabolic process // not recorded /// 0006801 // superoxide metabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006950 // response to stress // not recorded /// 0007165 // signal transduction // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // not recorded /// 0009268 // response to pH // not recorded /// 0010575 // positive regulation vascular endothelial growth factor production // not recorded /// 0015992 // proton transport // not recorded /// 0016477 // cell migration // not recorded /// 0022900 // electron transport chain // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0042554 // superoxide anion generation // inferred from mutant phenotype /// 0042554 // superoxide anion generation // not recorded /// 0042743 // hydrogen peroxide metabolic process // not recorded /// 0045726 // positive regulation of integrin biosynthetic process // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0051454 // intracellular pH elevation // not recorded /// 0055114 // oxidation reduction // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005768 // endosome // not recorded /// 0005769 // early endosome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043020 // NADPH oxidase complex // inferred from direct assay /// 0043020 // NADPH oxidase complex // not recorded 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016175 // superoxide-generating NADPH oxidase activity // inferred from direct assay /// 0016175 // superoxide-generating NADPH oxidase activity // not recorded /// 0016175 // superoxide-generating NADPH oxidase activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0030171 // voltage-gated proton channel activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048365 // Rac GTPase binding // not recorded /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1387312_a_at NM_012565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012565.1 /DB_XREF=gi:7110598 /GEN=Gck /FEA=FLmRNA /CNT=4 /TID=Rn.10447.1 /TIER=FL /STK=3 /UG=Rn.10447 /LL=24385 /DEF=Rattus norvegicus Glucokinase (Gck), mRNA. /PROD=glucokinase /FL=gb:NM_012565.1 gb:J04218.1 NM_012565 glucokinase Gck 24385 NM_012565 0001678 // cellular glucose homeostasis // inferred from mutant phenotype /// 0001678 // cellular glucose homeostasis // not recorded /// 0001678 // cellular glucose homeostasis // traceable author statement /// 0001678 // cellular glucose homeostasis // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005978 // glycogen biosynthetic process // inferred from direct assay /// 0006003 // fructose 2,6-bisphosphate metabolic process // inferred from direct assay /// 0006006 // glucose metabolic process // inferred from direct assay /// 0006006 // glucose metabolic process // not recorded /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006096 // glycolysis // inferred from direct assay /// 0006096 // glycolysis // inferred from electronic annotation /// 0006739 // NADP metabolic process // not recorded /// 0006739 // NADP metabolic process // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0019932 // second-messenger-mediated signaling // inferred from direct assay /// 0032024 // positive regulation of insulin secretion // inferred from direct assay /// 0032024 // positive regulation of insulin secretion // not recorded /// 0032024 // positive regulation of insulin secretion // inferred from sequence or structural similarity /// 0032811 // negative regulation of epinephrine secretion // inferred from mutant phenotype /// 0032869 // cellular response to insulin stimulus // inferred from direct assay /// 0042149 // cellular response to glucose starvation // inferred from mutant phenotype /// 0042327 // positive regulation of phosphorylation // inferred from direct assay /// 0042593 // glucose homeostasis // inferred from mutant phenotype /// 0042593 // glucose homeostasis // not recorded /// 0042593 // glucose homeostasis // inferred from sequence or structural similarity /// 0043266 // regulation of potassium ion transport // not recorded /// 0043266 // regulation of potassium ion transport // inferred from electronic annotation /// 0044320 // cellular response to leptin stimulus // inferred from direct assay /// 0045721 // negative regulation of gluconeogenesis // not recorded /// 0045721 // negative regulation of gluconeogenesis // inferred from sequence or structural similarity /// 0045725 // positive regulation of glycogen biosynthetic process // not recorded /// 0045725 // positive regulation of glycogen biosynthetic process // inferred from sequence or structural similarity /// 0045821 // positive regulation of glycolysis // inferred from direct assay /// 0046835 // carbohydrate phosphorylation // inferred from direct assay /// 0046835 // carbohydrate phosphorylation // not recorded /// 0046835 // carbohydrate phosphorylation // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // not recorded /// 0050796 // regulation of insulin secretion // inferred from electronic annotation /// 0051156 // glucose 6-phosphate metabolic process // inferred from direct assay /// 0051156 // glucose 6-phosphate metabolic process // not recorded /// 0051594 // detection of glucose // inferred from direct assay /// 0051594 // detection of glucose // inferred from mutant phenotype /// 0051594 // detection of glucose // not recorded /// 0051594 // detection of glucose // inferred from sequence or structural similarity /// 0051594 // detection of glucose // non-traceable author statement 0005625 // soluble fraction // not recorded /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from mutant phenotype /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005884 // actin filament // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay /// 0044448 // cell cortex part // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0004340 // glucokinase activity // inferred from direct assay /// 0004340 // glucokinase activity // not recorded /// 0004340 // glucokinase activity // inferred from sequence or structural similarity /// 0004340 // glucokinase activity // inferred from electronic annotation /// 0004396 // hexokinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0005536 // glucose binding // inferred from direct assay /// 0005536 // glucose binding // inferred from physical interaction /// 0005536 // glucose binding // not recorded /// 0005536 // glucose binding // inferred from sequence or structural similarity /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0043531 // ADP binding // inferred from direct assay 1387313_at NM_030865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030865.1 /DB_XREF=gi:13540692 /GEN=Myoc /FEA=FLmRNA /CNT=4 /TID=Rn.30051.1 /TIER=FL /STK=3 /UG=Rn.30051 /LL=81523 /DEF=Rattus norvegicus myocilin (Myoc), mRNA. /PROD=myocilin /FL=gb:NM_030865.1 gb:AB019393.1 gb:AF093567.1 NM_030865 myocilin Myoc 81523 NM_030865 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // not recorded 1387314_at NM_022513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022513.1 /DB_XREF=gi:11968091 /GEN=LOC64305 /FEA=FLmRNA /CNT=4 /TID=Rn.1183.1 /TIER=FL /STK=3 /UG=Rn.1183 /LL=64305 /DEF=Rattus norvegicus dopatyrosine sulfotransferase (LOC64305), mRNA. /PROD=dopatyrosine sulfotransferase /FL=gb:U38419.1 gb:D89375.1 gb:NM_022513.1 NM_022513 sulfotransferase family, cytosolic, 1B, member 1 Sult1b1 64305 NM_022513 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006805 // xenobiotic metabolic process // not recorded /// 0008152 // metabolic process // not recorded /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0009812 // flavonoid metabolic process // not recorded /// 0018958 // phenol metabolic process // inferred from electronic annotation /// 0018958 // phenol metabolic process // not recorded /// 0042403 // thyroid hormone metabolic process // inferred from electronic annotation /// 0042403 // thyroid hormone metabolic process // not recorded /// 0051923 // sulfation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0004062 // aryl sulfotransferase activity // inferred from direct assay /// 0004062 // aryl sulfotransferase activity // not recorded /// 0004062 // aryl sulfotransferase activity // inferred from electronic annotation /// 0008146 // sulfotransferase activity // not recorded /// 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387315_at NM_012878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012878.1 /DB_XREF=gi:7949132 /GEN=Sftpd /FEA=FLmRNA /CNT=4 /TID=Rn.11348.1 /TIER=FL /STK=3 /UG=Rn.11348 /LL=25350 /DEF=Rattus norvegicus Pulmonary surfactant protein D (Sftpd), mRNA. /PROD=pulmonary surfactant protein D /FL=gb:NM_012878.1 gb:M81231.1 NM_012878 surfactant protein D Sftpd 25350 NM_012878 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0008228 // opsonization // inferred from direct assay /// 0031960 // response to corticosteroid stimulus // inferred from expression pattern /// 0032703 // negative regulation of interleukin-2 production // inferred from direct assay /// 0042130 // negative regulation of T cell proliferation // inferred from direct assay /// 0043129 // surfactant homeostasis // inferred from mutant phenotype /// 0043129 // surfactant homeostasis // not recorded /// 0043129 // surfactant homeostasis // inferred from sequence or structural similarity /// 0048286 // lung alveolus development // not recorded /// 0048286 // lung alveolus development // inferred from sequence or structural similarity /// 0050765 // negative regulation of phagocytosis // inferred from direct assay /// 0050766 // positive regulation of phagocytosis // inferred from direct assay /// 0050828 // regulation of liquid surface tension // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0055093 // response to hyperoxia // inferred from expression pattern /// 0070848 // response to growth factor stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005771 // multivesicular body // inferred from direct assay /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from direct assay 0001530 // lipopolysaccharide binding // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay /// 0048029 // monosaccharide binding // inferred from direct assay /// 0051635 // bacterial cell surface binding // inferred from direct assay 1387316_at NM_030845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030845.1 /DB_XREF=gi:13540651 /GEN=Gro1 /FEA=FLmRNA /CNT=4 /TID=Rn.10907.1 /TIER=FL /STK=3 /UG=Rn.10907 /LL=81503 /DEF=Rattus norvegicus gro (Gro1), mRNA. /PROD=gro /FL=gb:NM_030845.1 gb:D11444.1 gb:M86536.1 NM_030845 chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) Cxcl1 81503 NM_030845 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation 1387317_at NM_016992 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_016992.1 /DB_XREF=gi:8392949 /GEN=Avp /FEA=FLmRNA /CNT=4 /TID=Rn.9976.1 /TIER=FL /STK=3 /UG=Rn.9976 /LL=24221 /DEF=Rattus norvegicus Arginine vasopressin (Diabetes insipidus) (Avp), mRNA. /PROD=arginine vasopressin (Diabetes insipidus), sameas Di (conflicting physical mapping) /FL=gb:NM_016992.1 gb:M25646.1 NM_016992 arginine vasopressin Avp 24221 NM_016992 0001659 // temperature homeostasis // traceable author statement /// 0002125 // maternal aggressive behavior // inferred from mutant phenotype /// 0003078 // regulation of natriuresis // inferred from mutant phenotype /// 0003084 // positive regulation of systemic arterial blood pressure // inferred from direct assay /// 0006939 // smooth muscle contraction // traceable author statement /// 0006950 // response to stress // inferred from expression pattern /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0007621 // negative regulation of female receptivity // inferred from mutant phenotype /// 0007625 // grooming behavior // inferred from mutant phenotype /// 0007626 // locomotory behavior // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0014049 // positive regulation of glutamate secretion // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030146 // diuresis // inferred from electronic annotation /// 0030146 // diuresis // not recorded /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // not recorded /// 0031394 // positive regulation of prostaglandin biosynthetic process // inferred from mutant phenotype /// 0032849 // positive regulation of cellular pH reduction // inferred from mutant phenotype /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0035094 // response to nicotine // inferred from expression pattern /// 0035176 // social behavior // inferred from mutant phenotype /// 0042310 // vasoconstriction // inferred from electronic annotation /// 0042538 // hyperosmotic salinity response // inferred from expression pattern /// 0042711 // maternal behavior // inferred from mutant phenotype /// 0043084 // penile erection // inferred from mutant phenotype /// 0045471 // response to ethanol // inferred from expression pattern /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype /// 0050880 // regulation of blood vessel size // inferred from electronic annotation /// 0050891 // multicellular organismal water homeostasis // inferred from mutant phenotype /// 0051970 // negative regulation of transmission of nerve impulse // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay 0005179 // hormone activity // inferred from electronic annotation /// 0005184 // neuropeptide hormone activity // inferred from direct assay /// 0005184 // neuropeptide hormone activity // traceable author statement /// 0005185 // neurohypophyseal hormone activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031894 // V1A vasopressin receptor binding // inferred from direct assay /// 0031894 // V1A vasopressin receptor binding // inferred from mutant phenotype /// 0031895 // V1B vasopressin receptor binding // inferred from mutant phenotype /// 0031896 // V2 vasopressin receptor binding // traceable author statement 1387318_at AY028605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY028605.1 /DB_XREF=gi:13447458 /FEA=FLmRNA /CNT=5 /TID=Rn.64491.1 /TIER=FL /STK=3 /UG=Rn.64491 /LL=66016 /UG_GENE=Kcnmb4 /DEF=Rattus norvegicus calcium-activated potassium channel beta 4 subunit mRNA, complete cds. /PROD=calcium-activated potassium channel beta 4subunit /FL=gb:AB050637.1 gb:NM_023960.1 gb:AY028605.1 AY028605 potassium large conductance calcium-activated channel, subfamily M, beta member 4 Kcnmb4 66016 NM_023960 0001508 // regulation of action potential // not recorded /// 0001508 // regulation of action potential // inferred from sequence or structural similarity /// 0001508 // regulation of action potential // inferred from electronic annotation /// 0005513 // detection of calcium ion // not recorded /// 0005513 // detection of calcium ion // inferred from sequence or structural similarity /// 0005513 // detection of calcium ion // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // not recorded /// 0006813 // potassium ion transport // inferred from sequence or structural similarity /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0019228 // regulation of action potential in neuron // not recorded /// 0019228 // regulation of action potential in neuron // inferred from sequence or structural similarity /// 0019228 // regulation of action potential in neuron // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // not recorded /// 0008076 // voltage-gated potassium channel complex // inferred from sequence or structural similarity /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015269 // calcium-activated potassium channel activity // not recorded /// 0015269 // calcium-activated potassium channel activity // inferred from sequence or structural similarity /// 0015269 // calcium-activated potassium channel activity // inferred from electronic annotation 1387319_at NM_019205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019205.1 /DB_XREF=gi:11276088 /GEN=Scya11 /FEA=FLmRNA /CNT=4 /TID=Rn.10632.1 /TIER=FL /STK=3 /UG=Rn.10632 /LL=29397 /DEF=Rattus norvegicus small inducible cytokine A11 (Scya11), mRNA. /PROD=small inducible cytokine A11 /FL=gb:U96637.1 gb:NM_019205.1 NM_019205 chemokine (C-C motif) ligand 11 Ccl11 29397 NM_019205 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0002544 // chronic inflammatory response // inferred from expression pattern /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0030838 // positive regulation of actin filament polymerization // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // not recorded /// 0032855 // positive regulation of Rac GTPase activity // inferred from electronic annotation /// 0032855 // positive regulation of Rac GTPase activity // not recorded /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0048245 // eosinophil chemotaxis // inferred from direct assay /// 0048245 // eosinophil chemotaxis // inferred from mutant phenotype /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060444 // branching involved in mammary gland duct morphogenesis // not recorded /// 0060763 // mammary duct terminal end bud growth // inferred from electronic annotation /// 0060763 // mammary duct terminal end bud growth // not recorded /// 0070670 // response to interleukin-4 // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from direct assay /// 0008009 // chemokine activity // inferred from electronic annotation 1387320_a_at AF266164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF266164.1 /DB_XREF=gi:8570179 /FEA=mRNA /CNT=1 /TID=Rn.10608.2 /TIER=ConsEnd /STK=0 /UG=Rn.10608 /LL=117284 /UG_GENE=LOC117284 /DEF=Rattus norvegicus densin-180 variant D mRNA, partial cds, alternatively spliced. /PROD=densin-180 variant D AF266164 leucine rich repeat containing 7 Lrrc7 117284 NM_057142 0006950 // response to stress // inferred from expression pattern /// 0010976 // positive regulation of neuron projection development // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0030175 // filopodium // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from mutant phenotype 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from direct assay 1387321_at NM_053381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053381.1 /DB_XREF=gi:16758111 /GEN=Atp1b4 /FEA=FLmRNA /CNT=3 /TID=Rn.48718.1 /TIER=FL /STK=3 /UG=Rn.48718 /LL=84396 /DEF=Rattus norvegicus ATPase, (Na+)K+ transporting, beta 4 polypeptide (Atp1b4), mRNA. /PROD=ATPase, (Na+)K+ transporting, beta 4polypeptide /FL=gb:AF158386.2 gb:NM_053381.1 gb:AF158385.2 NM_053381 ATPase, (Na+)/K+ transporting, beta 4 polypeptide Atp1b4 84396 NM_053381 0006350 // transcription // inferred from electronic annotation /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0015672 // monovalent inorganic cation transport // not recorded /// 0015672 // monovalent inorganic cation transport // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005637 // nuclear inner membrane // not recorded /// 0005637 // nuclear inner membrane // inferred from sequence or structural similarity /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005391 // sodium:potassium-exchanging ATPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1387322_at NM_053471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053471.1 /DB_XREF=gi:16758219 /GEN=Sema6b /FEA=FLmRNA /CNT=3 /TID=Rn.14540.1 /TIER=FL /STK=3 /UG=Rn.14540 /LL=84609 /DEF=Rattus norvegicus sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B (Sema6b), mRNA. /PROD=sema domain, transmembrane domain (TM), andcytoplasmic domain, /FL=gb:AB000776.1 gb:NM_053471.1 NM_053471 sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B Sema6b 84609 NM_053471 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1387323_at NM_012725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012725.1 /DB_XREF=gi:6981133 /GEN=Klkb1 /FEA=FLmRNA /CNT=3 /TID=Rn.9880.1 /TIER=FL /STK=3 /UG=Rn.9880 /LL=25048 /DEF=Rattus norvegicus Plasma kallikrein (Klkb1), mRNA. /PROD=plasma kallikrein /FL=gb:M58590.1 gb:NM_012725.1 gb:M30282.1 NM_012725 kallikrein B, plasma 1 Klkb1 25048 NM_012725 0006508 // proteolysis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation /// 0031639 // plasminogen activation // not recorded /// 0042730 // fibrinolysis // inferred from electronic annotation /// 0051919 // positive regulation of fibrinolysis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387324_at NM_013136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013136.1 /DB_XREF=gi:6981175 /GEN=Mak /FEA=FLmRNA /CNT=3 /TID=Rn.9670.1 /TIER=FL /STK=3 /UG=Rn.9670 /LL=25677 /DEF=Rattus norvegicus Male germ cell-associated kinase (Mak), mRNA. /PROD=male germ cell-associated kinase /FL=gb:NM_013136.1 gb:M35862.1 NM_013136 male germ cell-associated kinase Mak 25677 NM_013136 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387325_at NM_024143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024143.1 /DB_XREF=gi:13162325 /GEN=LOC79111 /FEA=FLmRNA /CNT=3 /TID=Rn.51349.1 /TIER=FL /STK=3 /UG=Rn.51349 /LL=79111 /DEF=Rattus norvegicus bile acid CoA ligase (LOC79111), mRNA. /PROD=bile acid CoA ligase /FL=gb:NM_024143.1 gb:AF242189.1 NM_024143 solute carrier family 27 (fatty acid transporter), member 5 Slc27a5 79111 NM_024143 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006642 // triglyceride mobilization // inferred from electronic annotation /// 0006642 // triglyceride mobilization // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008206 // bile acid metabolic process // inferred from mutant phenotype /// 0008206 // bile acid metabolic process // not recorded /// 0008206 // bile acid metabolic process // inferred from electronic annotation /// 0015908 // fatty acid transport // not recorded /// 0015908 // fatty acid transport // inferred from electronic annotation /// 0015911 // plasma membrane long-chain fatty acid transport // inferred from electronic annotation /// 0015911 // plasma membrane long-chain fatty acid transport // not recorded /// 0046951 // ketone body biosynthetic process // inferred from electronic annotation /// 0046951 // ketone body biosynthetic process // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0009925 // basal plasma membrane // inferred from electronic annotation /// 0009925 // basal plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004467 // long-chain fatty acid-CoA ligase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0015245 // fatty acid transporter activity // inferred from electronic annotation /// 0015245 // fatty acid transporter activity // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0047747 // cholate-CoA ligase activity // inferred from direct assay /// 0047747 // cholate-CoA ligase activity // inferred from electronic annotation 1387326_at NM_053967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053967.1 /DB_XREF=gi:16758855 /GEN=Spam /FEA=FLmRNA /CNT=3 /TID=Rn.42921.1 /TIER=FL /STK=3 /UG=Rn.42921 /LL=117037 /DEF=Rattus norvegicus sperm adhesion molecule (Spam), mRNA. /PROD=sperm adhesion molecule /FL=gb:NM_053967.1 NM_053967 sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding) Spam1 117037 NM_053967 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007338 // single fertilization // not recorded /// 0007338 // single fertilization // inferred from electronic annotation /// 0007342 // fusion of sperm to egg plasma membrane // traceable author statement /// 0007342 // fusion of sperm to egg plasma membrane // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0001669 // acrosomal vesicle // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004415 // hyalurononglucosaminidase activity // inferred from electronic annotation /// 0004415 // hyalurononglucosaminidase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation 1387327_at NM_133318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133318.1 /DB_XREF=gi:18959265 /GEN=Slm1 /FEA=FLmRNA /CNT=3 /TID=Rn.49319.1 /TIER=FL /STK=3 /UG=Rn.49319 /DEF=Rattus norvegicus Sam68-like mammalian protein 1 (Slm1), mRNA. /PROD=Sam68-like mammalian protein 1 /FL=gb:AF305618.1 gb:NM_133318.1 NM_133318 KH domain containing, RNA binding, signal transduction associated 2 Khdrbs2 170843 NM_133318 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008143 // poly(A) RNA binding // inferred from electronic annotation /// 0008143 // poly(A) RNA binding // not recorded /// 0008266 // poly(U) RNA binding // inferred from electronic annotation /// 0008266 // poly(U) RNA binding // not recorded /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded /// 0042169 // SH2 domain binding // inferred from electronic annotation /// 0042169 // SH2 domain binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1387328_at NM_019184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019184.1 /DB_XREF=gi:9506528 /GEN=Cyp2c /FEA=FLmRNA /CNT=3 /TID=Rn.10870.1 /TIER=FL /STK=3 /UG=Rn.10870 /LL=29277 /DEF=Rattus norvegicus Cytochrome P450, subfamily IIC (mephenytoin 4-hydroxylase) (Cyp2c), mRNA. /PROD=cytochrome P450, 2c29 /FL=gb:J02657.1 gb:NM_019184.1 gb:U33173.1 NM_019184 cytochrome P450, subfamily 2, polypeptide 11 Cyp2c11 29277 NM_019184 0006805 // xenobiotic metabolic process // traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008390 // testosterone 16-alpha-hydroxylase activity // inferred from mutant phenotype /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1387329_at NM_134467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134467.1 /DB_XREF=gi:19745197 /GEN=Oip1 /FEA=FLmRNA /CNT=3 /TID=Rn.82699.1 /TIER=FL /STK=3 /UG=Rn.82699 /DEF=Rattus norvegicus RING finger protein OIP1 (Oip1), mRNA. /PROD=RING finger protein OIP1 /FL=gb:NM_134467.1 gb:AF480444.1 NM_134467 ring finger protein 38 Rnf38 171501 NM_134467 0007286 // spermatid development // non-traceable author statement 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387330_at NM_024142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024142.1 /DB_XREF=gi:13162323 /GEN=LOC79110 /FEA=FLmRNA /CNT=3 /TID=Rn.51212.1 /TIER=FL /STK=3 /UG=Rn.51212 /LL=79110 /DEF=Rattus norvegicus osteoregulin (LOC79110), mRNA. /PROD=osteoregulin /FL=gb:AF260922.1 gb:NM_024142.1 NM_024142 matrix extracellular phosphoglycoprotein Mepe 79110 NM_024142 0030502 // negative regulation of bone mineralization // not recorded /// 0030502 // negative regulation of bone mineralization // inferred from electronic annotation /// 0046850 // regulation of bone remodeling // inferred from expression pattern 0005515 // protein binding // not recorded 1387331_at NM_012510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012510.1 /DB_XREF=gi:6978558 /GEN=Atp4b /FEA=FLmRNA /CNT=3 /TID=Rn.10033.1 /TIER=FL /STK=3 /UG=Rn.10033 /LL=24217 /DEF=Rattus norvegicus ATPase, H+,K+-transporting, beta (gastric H,K-ATPase beta subunit), defined by SSR, (Atp4b), mRNA. /PROD=ATPase, H+,K+-transporting, beta (gastricH,K-ATPase beta subunit), defined by SSR, /FL=gb:NM_012510.1 gb:M55655.1 gb:M35535.1 NM_012510 ATPase, H+/K+ exchanging, beta polypeptide Atp4b 24217 NM_012510 0001696 // gastric acid secretion // traceable author statement /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0015992 // proton transport // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from expression pattern 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005391 // sodium:potassium-exchanging ATPase activity // inferred from electronic annotation /// 0008900 // hydrogen:potassium-exchanging ATPase activity // traceable author statement 1387332_at NM_022275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022275.1 /DB_XREF=gi:11560098 /GEN=Nmu2r /FEA=FLmRNA /CNT=3 /TID=Rn.54472.1 /TIER=FL /STK=3 /UG=Rn.54472 /LL=64042 /DEF=Rattus norvegicus neuromedin U receptor 2 (Nmu2r), mRNA. /PROD=neuromedin U receptor 2 /FL=gb:NM_022275.1 gb:AB041229.1 gb:AF242875.1 NM_022275 neuromedin U receptor 2 Nmur2 64042 NM_022275 0002023 // reduction of food intake in response to dietary excess // inferred from electronic annotation /// 0002023 // reduction of food intake in response to dietary excess // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0007625 // grooming behavior // inferred from electronic annotation /// 0007625 // grooming behavior // not recorded /// 0019226 // transmission of nerve impulse // inferred from electronic annotation /// 0019226 // transmission of nerve impulse // not recorded /// 0043006 // activation of phospholipase A2 activity by calcium-mediated signaling // inferred from electronic annotation /// 0043006 // activation of phospholipase A2 activity by calcium-mediated signaling // not recorded /// 0048016 // inositol phosphate-mediated signaling // inferred from electronic annotation /// 0048016 // inositol phosphate-mediated signaling // not recorded /// 0048265 // response to pain // inferred from electronic annotation /// 0048265 // response to pain // not recorded /// 0050482 // arachidonic acid secretion // inferred from electronic annotation /// 0050482 // arachidonic acid secretion // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0001607 // neuromedin U receptor activity // inferred from electronic annotation /// 0001607 // neuromedin U receptor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005229 // intracellular calcium activated chloride channel activity // inferred from electronic annotation /// 0005229 // intracellular calcium activated chloride channel activity // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0008188 // neuropeptide receptor activity // inferred from direct assay /// 0008188 // neuropeptide receptor activity // not recorded /// 0008188 // neuropeptide receptor activity // inferred from electronic annotation /// 0042924 // neuromedin U binding // not recorded /// 0042924 // neuromedin U binding // inferred from electronic annotation 1387333_at NM_053645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053645.1 /DB_XREF=gi:16758455 /GEN=Il5ra /FEA=FLmRNA /CNT=3 /TID=Rn.67068.1 /TIER=FL /STK=3 /UG=Rn.67068 /LL=114103 /DEF=Rattus norvegicus interleukin 5 receptor, alpha (Il5ra), mRNA. /PROD=interleukin 5 receptor, alpha /FL=gb:AB056101.1 gb:AF324153.1 gb:NM_053645.1 NM_053645 interleukin 5 receptor, alpha Il5ra 114103 NM_053645 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // traceable author statement /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1387334_at NM_019180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019180.1 /DB_XREF=gi:9506886 /GEN=Mcpt6 /FEA=FLmRNA /CNT=3 /TID=Rn.10183.1 /TIER=FL /STK=3 /UG=Rn.10183 /LL=29268 /DEF=Rattus norvegicus mast cell protease 6 (Mcpt6), mRNA. /PROD=mast cell protease 6 /FL=gb:NM_019180.1 gb:U67909.1 gb:D38455.1 NM_019180 tryptase beta 2 Tpsb2 29268 NM_019180 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0005576 // extracellular region // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387335_s_at NM_023094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023094.1 /DB_XREF=gi:12831210 /GEN=LOC65270 /FEA=FLmRNA /CNT=3 /TID=Rn.53997.1 /TIER=FL /STK=3 /UG=Rn.53997 /LL=65270 /DEF=Rattus norvegicus N-acetylgalactosaminyltransferase A blood group-like enzyme (LOC65270), mRNA. /PROD=N-acetylgalactosaminyltransferase A bloodgroup-like enzyme /FL=gb:AF264018.2 gb:NM_023094.1 gb:AF469945.1 NM_023094 ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) Abo 65270 NM_023094 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0042742 // defense response to bacterium // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0004380 // glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity // inferred from direct assay /// 0004380 // glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0004381 // fucosylgalactoside 3-alpha-galactosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387336_at NM_022635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022635.1 /DB_XREF=gi:12018331 /GEN=Cml4 /FEA=FLmRNA /CNT=3 /TID=Rn.48757.1 /TIER=FL /STK=3 /UG=Rn.48757 /LL=64570 /DEF=Rattus norvegicus putative N-acetyltransferase Camello 4 (Cml4), mRNA. /PROD=putative N-acetyltransferase Camello 4 /FL=gb:NM_022635.1 gb:AF185570.1 NM_022635 N-acetyltransferase 8 Nat8 64570 NM_022635 0001702 // gastrulation with mouth forming second // not recorded /// 0001702 // gastrulation with mouth forming second // inferred from sequence or structural similarity /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007369 // gastrulation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0008080 // N-acetyltransferase activity // non-traceable author statement /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387337_at NM_012835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012835.1 /DB_XREF=gi:6978682 /GEN=Cort /FEA=FLmRNA /CNT=3 /TID=Rn.10490.1 /TIER=FL /STK=3 /UG=Rn.10490 /LL=25305 /DEF=Rattus norvegicus Preprocortistatin (Cort), mRNA. /PROD=preprocortistatin /FL=gb:NM_012835.1 gb:U51919.1 NM_012835 cortistatin Cort 25305 NM_012835 0007218 // neuropeptide signaling pathway // inferred from direct assay /// 0045187 // regulation of circadian sleep/wake cycle, sleep // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation 0001664 // G-protein-coupled receptor binding // not recorded /// 0005179 // hormone activity // inferred from electronic annotation /// 0005184 // neuropeptide hormone activity // inferred from direct assay 1387338_s_at NM_022612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022612.1 /DB_XREF=gi:12018279 /GEN=Bim /FEA=FLmRNA /CNT=3 /TID=Rn.48688.1 /TIER=FL /STK=3 /UG=Rn.48688 /LL=64547 /DEF=Rattus norvegicus Bcl-2 related apoptotic gene product BimL (Bim), mRNA. /PROD=Bcl-2 related apoptotic gene product BimL /FL=gb:AF136927.1 gb:AF065431.1 gb:NM_022612.1 NM_022612 BCL2-like 11 (apoptosis facilitator) Bcl2l11 64547 NM_022612 /// NM_171988 /// NM_171989 0001701 // in utero embryonic development // not recorded /// 0001776 // leukocyte homeostasis // not recorded /// 0001782 // B cell homeostasis // not recorded /// 0001783 // B cell apoptosis // not recorded /// 0001822 // kidney development // not recorded /// 0002260 // lymphocyte homeostasis // not recorded /// 0002262 // myeloid cell homeostasis // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from direct assay /// 0006917 // induction of apoptosis // traceable author statement /// 0007160 // cell-matrix adhesion // not recorded /// 0007283 // spermatogenesis // not recorded /// 0008584 // male gonad development // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0009791 // post-embryonic development // not recorded /// 0030879 // mammary gland development // not recorded /// 0035148 // tube formation // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0043029 // T cell homeostasis // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043583 // ear development // not recorded /// 0046620 // regulation of organ growth // not recorded /// 0048066 // developmental pigmentation // not recorded /// 0048070 // regulation of developmental pigmentation // not recorded /// 0048536 // spleen development // not recorded /// 0048538 // thymus development // not recorded /// 0048563 // post-embryonic organ morphogenesis // not recorded 0000300 // peripheral to membrane of membrane fraction // not recorded /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from direct assay 1387339_at NM_019192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019192.1 /DB_XREF=gi:9507086 /GEN=Sepp1 /FEA=FLmRNA /CNT=63 /TID=Rn.1451.1 /TIER=FL /STK=2 /UG=Rn.1451 /LL=29360 /DEF=Rattus norvegicus selenoprotein P, plasma, 1 (Sepp1), mRNA. /PROD=selenoprotein P, plasma, 1 /FL=gb:NM_019192.1 gb:M63574.1 gb:D25221.1 NM_019192 selenoprotein P, plasma, 1 Sepp1 29360 NM_001083911 /// NM_019192 0001887 // selenium metabolic process // not recorded /// 0007420 // brain development // not recorded /// 0007626 // locomotory behavior // not recorded /// 0009791 // post-embryonic development // not recorded /// 0010269 // response to selenium ion // inferred from expression pattern /// 0019953 // sexual reproduction // not recorded /// 0040007 // growth // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0008430 // selenium binding // inferred from electronic annotation /// 0008430 // selenium binding // not recorded 1387340_at AI409824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409824 /DB_XREF=gi:4253328 /DB_XREF=EST238117 /CLONE=RPLDO19 /FEA=FLmRNA /CNT=55 /TID=Rn.3551.1 /TIER=Stack /STK=7 /UG=Rn.3551 /UG_TITLE=Rattus norvegicus reticulon 3 protein isoform b mRNA, complete cds; alternatively spliced /FL=gb:NM_080909.1 gb:AF442358.1 gb:AF442357.1 AI409824 reticulon 3 Rtn3 140945 NM_001009953 /// NM_080909 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1387341_a_at NM_017026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017026.1 /DB_XREF=gi:8393758 /GEN=Mbp /FEA=FLmRNA /CNT=44 /TID=Rn.18.1 /TIER=FL /STK=2 /UG=Rn.18 /LL=24547 /DEF=Rattus norvegicus Myelin basic protein (Mbp), mRNA. /PROD=myelin basic protein /FL=gb:NM_017026.1 gb:M25889.1 NM_017026 myelin basic protein Mbp 24547 NM_001025289 /// NM_001025291 /// NM_001025292 /// NM_001025293 /// NM_001025294 /// NM_017026 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0042178 // xenobiotic catabolic process // inferred from direct assay /// 0042493 // response to drug // non-traceable author statement /// 0042552 // myelination // inferred from mutant phenotype /// 0042552 // myelination // not recorded /// 0042552 // myelination // inferred from electronic annotation /// 0050771 // negative regulation of axonogenesis // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005640 // nuclear outer membrane // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0033269 // internode region of axon // inferred from electronic annotation /// 0033269 // internode region of axon // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0042995 // cell projection // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043209 // myelin sheath // not recorded /// 0043209 // myelin sheath // traceable author statement /// 0043209 // myelin sheath // inferred from electronic annotation /// 0043218 // compact myelin // inferred from direct assay 0004364 // glutathione transferase activity // inferred from direct assay /// 0004364 // glutathione transferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008144 // drug binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0019911 // structural constituent of myelin sheath // inferred from mutant phenotype /// 0019911 // structural constituent of myelin sheath // traceable author statement /// 0019911 // structural constituent of myelin sheath // inferred from electronic annotation /// 0043295 // glutathione binding // inferred from direct assay 1387342_at BM389548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389548 /DB_XREF=gi:18189601 /DB_XREF=UI-R-CN1-cjn-f-24-0-UI.s1 /CLONE=UI-R-CN1-cjn-f-24-0-UI /FEA=FLmRNA /CNT=32 /TID=Rn.2695.1 /TIER=Stack /STK=26 /UG=Rn.2695 /LL=79218 /UG_GENE=Gng5 /UG_TITLE=G protein gamma-5 subunit /FL=gb:NM_024377.1 gb:M95780.1 BM389548 guanine nucleotide binding protein (G protein), gamma 5 Gng5 79218 NM_024377 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded 0005739 // mitochondrion // not recorded /// 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation 1387343_at NM_013154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013154.1 /DB_XREF=gi:6978642 /GEN=Cebpd /FEA=FLmRNA /CNT=32 /TID=Rn.6975.1 /TIER=FL /STK=2 /UG=Rn.6975 /LL=25695 /DEF=Rattus norvegicus CCAATenhancerbinding, protein (CEBP) delta (Cebpd), mRNA. /PROD=CCAATenhancerbinding, protein (CEBP) delta /FL=gb:M65149.1 gb:NM_013154.1 NM_013154 CCAAT/enhancer binding protein (C/EBP), delta Cebpd 25695 NM_013154 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003704 // specific RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0046983 // protein dimerization activity // inferred from electronic annotation 1387344_at AI407458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407458 /DB_XREF=gi:4250962 /DB_XREF=EST235747 /CLONE=ROVDT49 /FEA=FLmRNA /CNT=36 /TID=Rn.2098.1 /TIER=Stack /STK=21 /UG=Rn.2098 /LL=81708 /UG_GENE=Mmsdh /UG_TITLE=methylmalonate semialdehyde dehydrogenase gene /FL=gb:M93401.1 gb:NM_031057.1 AI407458 aldehyde dehydrogenase 6 family, member A1 Aldh6a1 81708 NM_031057 0006210 // thymine catabolic process // inferred from direct assay /// 0006573 // valine metabolic process // inferred from direct assay /// 0006573 // valine metabolic process // inferred from electronic annotation /// 0006574 // valine catabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0019484 // beta-alanine catabolic process // inferred from direct assay /// 0019859 // thymine metabolic process // inferred from direct assay /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000062 // acyl-CoA binding // inferred from sequence or structural similarity /// 0004491 // methylmalonate-semialdehyde dehydrogenase (acylating) activity // inferred from direct assay /// 0004491 // methylmalonate-semialdehyde dehydrogenase (acylating) activity // non-traceable author statement /// 0004491 // methylmalonate-semialdehyde dehydrogenase (acylating) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016790 // thiolester hydrolase activity // inferred from direct assay /// 0018478 // malonate-semialdehyde dehydrogenase (acetylating) activity // inferred from direct assay /// 0018478 // malonate-semialdehyde dehydrogenase (acetylating) activity // inferred from electronic annotation 1387345_at NM_023986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023986.1 /DB_XREF=gi:13027443 /GEN=Temo /FEA=FLmRNA /CNT=41 /TID=Rn.16691.1 /TIER=FL /STK=2 /UG=Rn.16691 /LL=78970 /DEF=Rattus norvegicus TEMO (Temo), mRNA. /PROD=TEMO /FL=gb:NM_023986.1 gb:AF296169.1 NM_023986 proteasome (prosome, macropain) activator subunit 4 Psme4 498433 NM_001025140 0005488 // binding // inferred from electronic annotation 1387346_at NM_017022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017022.1 /DB_XREF=gi:8393635 /GEN=Itgb1 /FEA=FLmRNA /CNT=33 /TID=Rn.25733.1 /TIER=FL /STK=2 /UG=Rn.25733 /LL=24511 /DEF=Rattus norvegicus Integrin, beta 1 (Itgb1), mRNA. /PROD=integrin, beta 1 /FL=gb:U12309.1 gb:NM_017022.1 NM_017022 integrin, beta 1 Itgb1 24511 NM_017022 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001708 // cell fate specification // inferred from electronic annotation /// 0001708 // cell fate specification // not recorded /// 0001894 // tissue homeostasis // inferred from mutant phenotype /// 0006874 // cellular calcium ion homeostasis // inferred from direct assay /// 0007155 // cell adhesion // inferred from direct assay /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007159 // leukocyte cell-cell adhesion // not recorded /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0007229 // integrin-mediated signaling pathway // inferred from direct assay /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008354 // germ cell migration // inferred from electronic annotation /// 0008354 // germ cell migration // not recorded /// 0010811 // positive regulation of cell-substrate adhesion // inferred from mutant phenotype /// 0010976 // positive regulation of neuron projection development // inferred from mutant phenotype /// 0014823 // response to activity // inferred from expression pattern /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0031175 // neuron projection development // not recorded /// 0031175 // neuron projection development // inferred from electronic annotation /// 0031345 // negative regulation of cell projection organization // inferred from mutant phenotype /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032594 // protein transport within lipid bilayer // inferred from mutant phenotype /// 0033631 // cell-cell adhesion mediated by integrin // not recorded /// 0034698 // response to gonadotropin stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043410 // positive regulation of MAPKKK cascade // inferred from direct assay /// 0045214 // sarcomere organization // inferred from electronic annotation /// 0045214 // sarcomere organization // not recorded /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from mutant phenotype /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0045807 // positive regulation of endocytosis // inferred from mutant phenotype /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from mutant phenotype /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // not recorded /// 0060135 // maternal process involved in female pregnancy // inferred from expression pattern /// 0070830 // tight junction assembly // inferred from mutant phenotype /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern /// 0071305 // cellular response to vitamin D // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern /// 0071479 // cellular response to ionizing radiation // inferred from expression pattern /// 0071559 // response to transforming growth factor beta stimulus // inferred from expression pattern 0001669 // acrosomal vesicle // inferred from direct assay /// 0005604 // basement membrane // inferred from direct assay /// 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from direct assay /// 0005912 // adherens junction // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0005925 // focal adhesion // not recorded /// 0008305 // integrin complex // inferred by curator /// 0008305 // integrin complex // inferred from direct assay /// 0008305 // integrin complex // inferred from mutant phenotype /// 0008305 // integrin complex // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0030056 // hemidesmosome // inferred from direct assay /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0031594 // neuromuscular junction // not recorded /// 0032587 // ruffle membrane // not recorded /// 0034667 // alpha3-beta1 integrin complex // inferred from direct assay /// 0034679 // alpha9-beta1 integrin complex // inferred from direct assay /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042383 // sarcolemma // not recorded /// 0042470 // melanosome // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay 0001948 // glycoprotein binding // inferred from physical interaction /// 0001968 // fibronectin binding // inferred from direct assay /// 0002020 // protease binding // inferred from physical interaction /// 0003779 // actin binding // inferred from direct assay /// 0004872 // receptor activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005178 // integrin binding // inferred from mutant phenotype /// 0005178 // integrin binding // inferred from physical interaction /// 0005178 // integrin binding // not recorded /// 0005178 // integrin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005518 // collagen binding // inferred from direct assay /// 0019900 // kinase binding // inferred from physical interaction /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from physical interaction /// 0042277 // peptide binding // inferred from direct assay /// 0042802 // identical protein binding // not recorded /// 0043236 // laminin binding // inferred from direct assay /// 0043236 // laminin binding // inferred from mutant phenotype /// 0046982 // protein heterodimerization activity // inferred by curator /// 0046982 // protein heterodimerization activity // inferred from mutant phenotype /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0051393 // alpha-actinin binding // inferred from direct assay 1387347_at NM_012817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012817.1 /DB_XREF=gi:6981087 /GEN=Igfbp5 /FEA=FLmRNA /CNT=23 /TID=Rn.9994.1 /TIER=FL /STK=2 /UG=Rn.9994 /LL=25285 /DEF=Rattus norvegicus Insulin-like growth factor-binding protein 5 (Igfbp5), mRNA. /PROD=insulin-like growth factor-binding protein 5 /FL=gb:M62781.1 gb:NM_012817.1 NM_012817 insulin-like growth factor binding protein 5 Igfbp5 25285 NM_012817 0001558 // regulation of cell growth // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0014912 // negative regulation of smooth muscle cell migration // inferred from electronic annotation /// 0014912 // negative regulation of smooth muscle cell migration // not recorded /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0017148 // negative regulation of translation // not recorded /// 0023034 // intracellular signaling pathway // inferred from expression pattern /// 0030336 // negative regulation of cell migration // not recorded /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0043569 // negative regulation of insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0043569 // negative regulation of insulin-like growth factor receptor signaling pathway // not recorded /// 0048630 // skeletal muscle tissue growth // inferred from expression pattern /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048662 // negative regulation of smooth muscle cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005520 // insulin-like growth factor binding // inferred from direct assay /// 0005520 // insulin-like growth factor binding // not recorded /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation /// 0031994 // insulin-like growth factor I binding // inferred from electronic annotation /// 0031994 // insulin-like growth factor I binding // not recorded 1387348_at BE113270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113270 /DB_XREF=gi:8505375 /DB_XREF=UI-R-BJ1-awd-e-04-0-UI.s1 /CLONE=UI-R-BJ1-awd-e-04-0-UI /FEA=FLmRNA /CNT=23 /TID=Rn.9994.1 /TIER=Stack /STK=10 /UG=Rn.9994 /LL=25285 /UG_GENE=Igfbp5 /UG_TITLE=Insulin-like growth factor-binding protein 5 /FL=gb:M62781.1 gb:NM_012817.1 BE113270 insulin-like growth factor binding protein 5 Igfbp5 25285 NM_012817 0001558 // regulation of cell growth // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0014912 // negative regulation of smooth muscle cell migration // inferred from electronic annotation /// 0014912 // negative regulation of smooth muscle cell migration // not recorded /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0017148 // negative regulation of translation // not recorded /// 0023034 // intracellular signaling pathway // inferred from expression pattern /// 0030336 // negative regulation of cell migration // not recorded /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0043569 // negative regulation of insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0043569 // negative regulation of insulin-like growth factor receptor signaling pathway // not recorded /// 0048630 // skeletal muscle tissue growth // inferred from expression pattern /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048662 // negative regulation of smooth muscle cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005520 // insulin-like growth factor binding // inferred from direct assay /// 0005520 // insulin-like growth factor binding // not recorded /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation /// 0031994 // insulin-like growth factor I binding // inferred from electronic annotation /// 0031994 // insulin-like growth factor I binding // not recorded 1387349_at NM_013028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013028.1 /DB_XREF=gi:6981533 /GEN=Shox2 /FEA=FLmRNA /CNT=21 /TID=Rn.11258.1 /TIER=FL /STK=2 /UG=Rn.11258 /LL=25546 /DEF=Rattus norvegicus Short stature homeobox 2 (Shox2), mRNA. /PROD=short stature homeobox 2 /FL=gb:NM_013028.1 NM_013028 short stature homeobox 2 Shox2 25546 NM_013028 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0002063 // chondrocyte development // inferred from electronic annotation /// 0002063 // chondrocyte development // not recorded /// 0003170 // heart valve development // inferred from electronic annotation /// 0003170 // heart valve development // not recorded /// 0003209 // cardiac atrium morphogenesis // inferred from electronic annotation /// 0003209 // cardiac atrium morphogenesis // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0032330 // regulation of chondrocyte differentiation // inferred from electronic annotation /// 0032330 // regulation of chondrocyte differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045880 // positive regulation of smoothened signaling pathway // inferred from electronic annotation /// 0045880 // positive regulation of smoothened signaling pathway // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048557 // embryonic digestive tract morphogenesis // inferred from electronic annotation /// 0048557 // embryonic digestive tract morphogenesis // not recorded /// 0048598 // embryonic morphogenesis // inferred from electronic annotation /// 0048598 // embryonic morphogenesis // not recorded /// 0060272 // embryonic skeletal joint morphogenesis // inferred from electronic annotation /// 0060272 // embryonic skeletal joint morphogenesis // not recorded /// 0060351 // cartilage development involved in endochondral bone morphogenesis // inferred from electronic annotation /// 0060351 // cartilage development involved in endochondral bone morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1387350_at NM_053671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053671.1 /DB_XREF=gi:16758483 /GEN=Tmf1 /FEA=FLmRNA /CNT=17 /TID=Rn.54669.1 /TIER=FL /STK=2 /UG=Rn.54669 /LL=114206 /DEF=Rattus norvegicus TATA element modulatory factor 1 (Tmf1), mRNA. /PROD=TATA element modulatory factor 1 /FL=gb:AF107843.1 gb:NM_053671.1 NM_053671 TATA element modulatory factor 1 Tmf1 114206 NM_053671 0005515 // protein binding // not recorded 1387351_at NM_031825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031825.1 /DB_XREF=gi:13929177 /GEN=Fbn1 /FEA=FLmRNA /CNT=36 /TID=Rn.12759.1 /TIER=FL /STK=2 /UG=Rn.12759 /LL=83727 /DEF=Rattus norvegicus fibrillin-1 (Fbn1), mRNA. /PROD=fibrillin-1 /FL=gb:AF135059.1 gb:NM_031825.1 NM_031825 fibrillin 1 Fbn1 83727 NM_031825 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001822 // kidney development // inferred from mutant phenotype /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded 0001527 // microfibril // inferred from electronic annotation /// 0001527 // microfibril // not recorded /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // not recorded 0005201 // extracellular matrix structural constituent // inferred from mutant phenotype /// 0005201 // extracellular matrix structural constituent // not recorded /// 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387352_at AI175966 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175966 /DB_XREF=gi:3726604 /DB_XREF=EST219542 /CLONE=ROVBH76 /FEA=FLmRNA /CNT=18 /TID=Rn.2801.1 /TIER=Stack /STK=10 /UG=Rn.2801 /LL=83805 /UG_GENE=Src /UG_TITLE=tyrosine protein kinase pp60-c-src /FL=gb:AF157016.1 gb:NM_031977.1 gb:AF130457.1 AI175966 v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) Src 83805 NM_031977 0001101 // response to acid // inferred from expression pattern /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006950 // response to stress // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from expression pattern /// 0007243 // intracellular protein kinase cascade // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0008283 // cell proliferation // inferred from direct assay /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009615 // response to virus // inferred from expression pattern /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0010740 // positive regulation of intracellular protein kinase cascade // inferred from mutant phenotype /// 0010907 // positive regulation of glucose metabolic process // inferred from mutant phenotype /// 0014911 // positive regulation of smooth muscle cell migration // inferred from mutant phenotype /// 0016310 // phosphorylation // not recorded /// 0016337 // cell-cell adhesion // inferred from expression pattern /// 0016477 // cell migration // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0033146 // regulation of estrogen receptor signaling pathway // not recorded /// 0033146 // regulation of estrogen receptor signaling pathway // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from direct assay /// 0045056 // transcytosis // inferred from direct assay /// 0045785 // positive regulation of cell adhesion // inferred from direct assay /// 0046628 // positive regulation of insulin receptor signaling pathway // inferred from direct assay /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from expression pattern /// 0048011 // nerve growth factor receptor signaling pathway // inferred from direct assay /// 0048477 // oogenesis // not recorded /// 0048477 // oogenesis // inferred from electronic annotation /// 0050715 // positive regulation of cytokine secretion // inferred from mutant phenotype /// 0051222 // positive regulation of protein transport // inferred from mutant phenotype /// 0051385 // response to mineralocorticoid stimulus // inferred from expression pattern /// 0051602 // response to electrical stimulus // inferred from expression pattern /// 0060065 // uterus development // not recorded /// 0060065 // uterus development // inferred from electronic annotation /// 0060444 // branching involved in mammary gland duct morphogenesis // not recorded /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070542 // response to fatty acid // inferred from expression pattern /// 0070555 // response to interleukin-1 // not recorded /// 0071222 // cellular response to lipopolysaccharide // inferred from expression pattern /// 0071398 // cellular response to fatty acid // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from expression pattern 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005901 // caveola // inferred from direct assay /// 0005901 // caveola // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0019717 // synaptosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005080 // protein kinase C binding // inferred from physical interaction /// 0005102 // receptor binding // inferred from physical interaction /// 0005158 // insulin receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019904 // protein domain specific binding // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0042169 // SH2 domain binding // not recorded /// 0050839 // cell adhesion molecule binding // inferred from physical interaction 1387353_at AI105076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105076 /DB_XREF=gi:3705115 /DB_XREF=EST214365 /CLONE=RHECN34 /FEA=FLmRNA /CNT=24 /TID=Rn.4293.1 /TIER=Stack /STK=9 /UG=Rn.4293 /LL=25233 /UG_GENE=Akt2 /UG_TITLE=Murine thymoma viral (v-akt) oncogene homolog 2 /FL=gb:NM_017093.1 gb:D30041.1 AI105076 v-akt murine thymoma viral oncogene homolog 2 Akt2 25233 NM_017093 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006970 // response to osmotic stress // inferred from expression pattern /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // not recorded /// 0009967 // positive regulation of signal transduction // inferred from mutant phenotype /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0010748 // negative regulation of plasma membrane long-chain fatty acid transport // inferred from electronic annotation /// 0010748 // negative regulation of plasma membrane long-chain fatty acid transport // not recorded /// 0010765 // positive regulation of sodium ion transport // inferred from mutant phenotype /// 0010907 // positive regulation of glucose metabolic process // inferred from electronic annotation /// 0010907 // positive regulation of glucose metabolic process // not recorded /// 0014850 // response to muscle activity // inferred from expression pattern /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032000 // positive regulation of fatty acid beta-oxidation // inferred from electronic annotation /// 0032000 // positive regulation of fatty acid beta-oxidation // not recorded /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from mutant phenotype /// 0032869 // cellular response to insulin stimulus // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0033119 // negative regulation of RNA splicing // inferred from mutant phenotype /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0043154 // negative regulation of caspase activity // inferred from mutant phenotype /// 0043491 // protein kinase B signaling cascade // inferred from mutant phenotype /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from mutant phenotype /// 0045725 // positive regulation of glycogen biosynthetic process // inferred from electronic annotation /// 0045725 // positive regulation of glycogen biosynthetic process // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046326 // positive regulation of glucose import // inferred from mutant phenotype /// 0046326 // positive regulation of glucose import // not recorded /// 0046326 // positive regulation of glucose import // inferred from electronic annotation /// 0046328 // regulation of JNK cascade // inferred from electronic annotation /// 0046328 // regulation of JNK cascade // not recorded /// 0050927 // positive regulation of positive chemotaxis // inferred from direct assay /// 0070887 // cellular response to chemical stimulus // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0031982 // vesicle // inferred from direct assay /// 0032593 // insulin-responsive compartment // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387354_at NM_032612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032612.1 /DB_XREF=gi:14249123 /GEN=Stat1 /FEA=FLmRNA /CNT=16 /TID=Rn.12592.1 /TIER=FL /STK=2 /UG=Rn.12592 /LL=25124 /DEF=Rattus norvegicus Signal transducer and activator of transcription 1 (Stat1), mRNA. /PROD=signal transducer and activator of transcription1 /FL=gb:AF205604.1 gb:NM_032612.1 NM_032612 signal transducer and activator of transcription 1 /// signal transducer and activator of transcription 4 Stat1 /// Stat4 25124 /// 367264 NM_001012226 /// NM_001034164 /// NM_032612 0006350 // transcription // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006917 // induction of apoptosis // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007259 // JAK-STAT cascade // inferred from mutant phenotype /// 0007259 // JAK-STAT cascade // traceable author statement /// 0007584 // response to nutrient // inferred from direct assay /// 0008015 // blood circulation // inferred from mutant phenotype /// 0008283 // cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0009612 // response to mechanical stimulus // inferred from direct assay /// 0009617 // response to bacterium // not recorded /// 0009617 // response to bacterium // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0031663 // lipopolysaccharide-mediated signaling pathway // not recorded /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from direct assay /// 0034097 // response to cytokine stimulus // inferred from direct assay /// 0042493 // response to drug // inferred from direct assay /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043330 // response to exogenous dsRNA // not recorded /// 0043330 // response to exogenous dsRNA // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0051591 // response to cAMP // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded 1387355_at BM384639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384639 /DB_XREF=gi:18184692 /DB_XREF=UI-R-DY0-ckl-d-23-0-UI.s1 /CLONE=UI-R-DY0-ckl-d-23-0-UI /FEA=FLmRNA /CNT=22 /TID=Rn.54503.1 /TIER=Stack /STK=11 /UG=Rn.54503 /LL=58968 /UG_GENE=Agc1 /UG_TITLE=aggrecan 1 /FL=gb:J03485.1 gb:NM_022190.1 BM384639 aggrecan Acan 58968 NM_022190 0001502 // cartilage condensation // not recorded /// 0001503 // ossification // inferred from expression pattern /// 0002063 // chondrocyte development // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from expression pattern /// 0009314 // response to radiation // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009629 // response to gravity // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010259 // multicellular organismal aging // inferred from expression pattern /// 0010447 // response to acidity // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0021510 // spinal cord development // inferred from expression pattern /// 0030166 // proteoglycan biosynthetic process // not recorded /// 0030199 // collagen fibril organization // not recorded /// 0030336 // negative regulation of cell migration // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0060591 // chondroblast differentiation // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from direct assay /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005578 // proteinaceous extracellular matrix // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0031012 // extracellular matrix // not recorded /// 0048222 // glycoprotein network // inferred from direct assay 0005201 // extracellular matrix structural constituent // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // inferred from electronic annotation 1387356_at NM_031823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031823.1 /DB_XREF=gi:13929175 /GEN=Wfs1 /FEA=FLmRNA /CNT=16 /TID=Rn.16015.1 /TIER=FL /STK=2 /UG=Rn.16015 /LL=83725 /DEF=Rattus norvegicus Wolfram syndrome 1 (wolframin) (Wfs1), mRNA. /PROD=Wolfram syndrome 1 (wolframin) /FL=gb:NM_031823.1 gb:AF136378.1 NM_031823 Wolfram syndrome 1 homolog (human) Wfs1 83725 NM_031823 0001822 // kidney development // not recorded /// 0003091 // renal water homeostasis // not recorded /// 0007601 // visual perception // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0032469 // endoplasmic reticulum calcium ion homeostasis // not recorded /// 0042048 // olfactory behavior // inferred from expression pattern /// 0042593 // glucose homeostasis // not recorded /// 0043069 // negative regulation of programmed cell death // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0050877 // neurological system process // not recorded /// 0051247 // positive regulation of protein metabolic process // not recorded /// 0051928 // positive regulation of calcium ion transport // not recorded /// 0055074 // calcium ion homeostasis // not recorded 0030176 // integral to endoplasmic reticulum membrane // not recorded /// 0030425 // dendrite // inferred from direct assay 0051117 // ATPase binding // inferred from electronic annotation /// 0051117 // ATPase binding // not recorded 1387357_at NM_133387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133387.1 /DB_XREF=gi:19173741 /GEN=Tmlh /FEA=FLmRNA /CNT=13 /TID=Rn.3607.1 /TIER=FL /STK=2 /UG=Rn.3607 /DEF=Rattus norvegicus epsilon-trimethyllysine hydroxylase (Tmlh), mRNA. /PROD=epsilon-trimethyllysine hydroxylase /FL=gb:AF374406.1 gb:NM_133387.1 NM_133387 trimethyllysine hydroxylase, epsilon Tmlhe 170898 NM_133387 0045329 // carnitine biosynthetic process // not recorded /// 0045329 // carnitine biosynthetic process // traceable author statement /// 0045329 // carnitine biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // not recorded /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050353 // trimethyllysine dioxygenase activity // inferred from direct assay /// 0050353 // trimethyllysine dioxygenase activity // not recorded /// 0050353 // trimethyllysine dioxygenase activity // inferred from electronic annotation 1387358_at NM_022385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022385.1 /DB_XREF=gi:11693149 /GEN=Arl1 /FEA=FLmRNA /CNT=20 /TID=Rn.3065.1 /TIER=FL /STK=2 /UG=Rn.3065 /LL=64187 /DEF=Rattus norvegicus ADP-ribosylation factor-like 1 (Arl1), mRNA. /PROD=ADP-ribosylation factor-like 1 /FL=gb:U12402.1 gb:NM_022385.1 NM_022385 ADP-ribosylation factor-like 1 Arl1 64187 NM_022385 0006412 // translation // inferred from electronic annotation /// 0007030 // Golgi organization // inferred from mutant phenotype /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0048193 // Golgi vesicle transport // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387359_at NM_053788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053788.1 /DB_XREF=gi:16758629 /GEN=Stx1a /FEA=FLmRNA /CNT=10 /TID=Rn.9943.1 /TIER=FL /STK=2 /UG=Rn.9943 /LL=116470 /DEF=Rattus norvegicus syntaxin 1 a (Stx1a), mRNA. /PROD=syntaxin 1 a /FL=gb:NM_053788.1 gb:AF217191.1 NM_053788 syntaxin 1A (brain)-like /// syntaxin 1A (brain) LOC100360064 /// Stx1a 100360064 /// 116470 NM_053788 /// XM_002727985 0001956 // positive regulation of neurotransmitter secretion // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // traceable author statement /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0009629 // response to gravity // inferred from direct assay /// 0016081 // synaptic vesicle docking involved in exocytosis // inferred from expression pattern /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0017156 // calcium ion-dependent exocytosis // inferred from electronic annotation /// 0017156 // calcium ion-dependent exocytosis // not recorded /// 0017157 // regulation of exocytosis // inferred from mutant phenotype /// 0045921 // positive regulation of exocytosis // inferred from direct assay 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042641 // actomyosin // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0070032 // synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex // inferred from direct assay /// 0070044 // synaptobrevin 2-SNAP-25-syntaxin-1a complex // inferred from direct assay /// 0070044 // synaptobrevin 2-SNAP-25-syntaxin-1a complex // not recorded /// 0070044 // synaptobrevin 2-SNAP-25-syntaxin-1a complex // inferred from electronic annotation 0000149 // SNARE binding // inferred from direct assay /// 0000149 // SNARE binding // inferred from physical interaction /// 0000149 // SNARE binding // not recorded /// 0000149 // SNARE binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // inferred from direct assay /// 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017022 // myosin binding // inferred from physical interaction /// 0019855 // calcium channel inhibitor activity // inferred from electronic annotation /// 0019855 // calcium channel inhibitor activity // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030674 // protein binding, bridging // inferred from physical interaction /// 0032028 // myosin head/neck binding // inferred from physical interaction /// 0043008 // ATP-dependent protein binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from direct assay /// 0048306 // calcium-dependent protein binding // inferred from physical interaction 1387360_at BI290256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290256 /DB_XREF=gi:14948657 /DB_XREF=UI-R-DK0-cfu-b-03-0-UI.s1 /CLONE=UI-R-DK0-cfu-b-03-0-UI /FEA=FLmRNA /CNT=10 /TID=Rn.9943.1 /TIER=ConsEnd /STK=0 /UG=Rn.9943 /LL=116470 /UG_GENE=Stx1a /UG_TITLE=syntaxin 1 a /FL=gb:NM_053788.1 gb:AF217191.1 BI290256 syntaxin 1A (brain) Stx1a 116470 NM_053788 0001956 // positive regulation of neurotransmitter secretion // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // traceable author statement /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0009629 // response to gravity // inferred from direct assay /// 0016081 // synaptic vesicle docking involved in exocytosis // inferred from expression pattern /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0017156 // calcium ion-dependent exocytosis // inferred from electronic annotation /// 0017156 // calcium ion-dependent exocytosis // not recorded /// 0017157 // regulation of exocytosis // inferred from mutant phenotype /// 0045921 // positive regulation of exocytosis // inferred from direct assay 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042641 // actomyosin // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0070032 // synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex // inferred from direct assay /// 0070044 // synaptobrevin 2-SNAP-25-syntaxin-1a complex // inferred from direct assay /// 0070044 // synaptobrevin 2-SNAP-25-syntaxin-1a complex // not recorded /// 0070044 // synaptobrevin 2-SNAP-25-syntaxin-1a complex // inferred from electronic annotation 0000149 // SNARE binding // inferred from direct assay /// 0000149 // SNARE binding // inferred from physical interaction /// 0000149 // SNARE binding // not recorded /// 0000149 // SNARE binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // inferred from direct assay /// 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017022 // myosin binding // inferred from physical interaction /// 0019855 // calcium channel inhibitor activity // inferred from electronic annotation /// 0019855 // calcium channel inhibitor activity // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030674 // protein binding, bridging // inferred from physical interaction /// 0032028 // myosin head/neck binding // inferred from physical interaction /// 0043008 // ATP-dependent protein binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from direct assay /// 0048306 // calcium-dependent protein binding // inferred from physical interaction 1387361_s_at NM_053291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053291.1 /DB_XREF=gi:16757985 /GEN=Pgk1 /FEA=FLmRNA /CNT=10 /TID=Rn.10989.1 /TIER=FL /STK=2 /UG=Rn.10989 /LL=24644 /DEF=Rattus norvegicus phosphoglycerate kinase 1 (Pgk1), mRNA. /PROD=phosphoglycerate kinase 1 /FL=gb:NM_053291.1 gb:M31788.1 NM_053291 phosphoglycerate kinase 1 Pgk1 24644 NM_053291 0005975 // carbohydrate metabolic process // inferred from direct assay /// 0006094 // gluconeogenesis // inferred from direct assay /// 0006094 // gluconeogenesis // inferred from mutant phenotype /// 0006096 // glycolysis // inferred from direct assay /// 0006096 // glycolysis // inferred from mutant phenotype /// 0006096 // glycolysis // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0016310 // phosphorylation // inferred from sequence or structural similarity 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004618 // phosphoglycerate kinase activity // inferred from direct assay /// 0004618 // phosphoglycerate kinase activity // inferred from mutant phenotype /// 0004618 // phosphoglycerate kinase activity // not recorded /// 0004618 // phosphoglycerate kinase activity // inferred from sequence or structural similarity /// 0004618 // phosphoglycerate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0043531 // ADP binding // inferred from direct assay 1387362_at NM_013178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013178.1 /DB_XREF=gi:6981511 /GEN=Scn4a /FEA=FLmRNA /CNT=9 /TID=Rn.9700.1 /TIER=FL /STK=2 /UG=Rn.9700 /LL=25722 /DEF=Rattus norvegicus Sodium channel, voltage-gated, type IV, alpha polypeptide (Scn4a), mRNA. /PROD=sodium channel, voltage-gated, type IV, alphapolypeptide /FL=gb:M26643.1 gb:NM_013178.1 NM_013178 sodium channel, voltage-gated, type IV, alpha subunit Scn4a 25722 NM_013178 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // traceable author statement /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0001518 // voltage-gated sodium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005248 // voltage-gated sodium channel activity // inferred from electronic annotation /// 0005248 // voltage-gated sodium channel activity // traceable author statement /// 0005272 // sodium channel activity // inferred from electronic annotation 1387363_at NM_057185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057185.1 /DB_XREF=gi:17105333 /GEN=Folh1 /FEA=FLmRNA /CNT=8 /TID=Rn.10609.1 /TIER=FL /STK=2 /UG=Rn.10609 /LL=85309 /DEF=Rattus norvegicus folate hydrolase (Folh1), mRNA. /PROD=folate hydrolase /FL=gb:NM_057185.1 gb:AF040256.1 gb:U75973.1 NM_057185 folate hydrolase 1 Folh1 85309 NM_057185 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006760 // folic acid and derivative metabolic process // inferred from electronic annotation /// 0006760 // folic acid and derivative metabolic process // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016805 // dipeptidase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387364_at AF040256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF040256.1 /DB_XREF=gi:2982228 /FEA=FLmRNA /CNT=8 /TID=Rn.10609.1 /TIER=FL /STK=1 /UG=Rn.10609 /LL=85309 /UG_GENE=Folh1 /DEF=Rattus norvegicus glutamate carboxypeptidase II mRNA, complete cds. /PROD=glutamate carboxypeptidase II /FL=gb:NM_057185.1 gb:AF040256.1 gb:U75973.1 AF040256 folate hydrolase 1 Folh1 85309 NM_057185 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006760 // folic acid and derivative metabolic process // inferred from electronic annotation /// 0006760 // folic acid and derivative metabolic process // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016805 // dipeptidase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387365_at NM_031627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031627.1 /DB_XREF=gi:13928863 /GEN=Nr1h3 /FEA=FLmRNA /CNT=8 /TID=Rn.11209.1 /TIER=FL /STK=2 /UG=Rn.11209 /LL=58852 /DEF=Rattus norvegicus nuclear receptor subfamily 1, group H, member 3 (Nr1h3), mRNA. /PROD=nuclear receptor subfamily 1, group H, member 3 /FL=gb:NM_031627.1 gb:U11685.1 NM_031627 nuclear receptor subfamily 1, group H, member 3 Nr1h3 58852 NM_031627 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006629 // lipid metabolic process // inferred from expression pattern /// 0007165 // signal transduction // not recorded /// 0008286 // insulin receptor signaling pathway // inferred from expression pattern /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010867 // positive regulation of triglyceride biosynthetic process // not recorded /// 0010875 // positive regulation of cholesterol efflux // inferred from electronic annotation /// 0010875 // positive regulation of cholesterol efflux // not recorded /// 0010887 // negative regulation of cholesterol storage // inferred from electronic annotation /// 0010887 // negative regulation of cholesterol storage // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0032270 // positive regulation of cellular protein metabolic process // not recorded /// 0032369 // negative regulation of lipid transport // not recorded /// 0032376 // positive regulation of cholesterol transport // not recorded /// 0032570 // response to progesterone stimulus // not recorded /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0043277 // apoptotic cell clearance // not recorded /// 0044255 // cellular lipid metabolic process // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045723 // positive regulation of fatty acid biosynthetic process // not recorded /// 0045861 // negative regulation of proteolysis // inferred from electronic annotation /// 0045861 // negative regulation of proteolysis // not recorded /// 0048550 // negative regulation of pinocytosis // not recorded /// 0051006 // positive regulation of lipoprotein lipase activity // not recorded /// 0055088 // lipid homeostasis // not recorded /// 0055088 // lipid homeostasis // inferred from electronic annotation /// 0055092 // sterol homeostasis // not recorded /// 0055092 // sterol homeostasis // inferred from electronic annotation /// 0070328 // triglyceride homeostasis // inferred from electronic annotation /// 0070328 // triglyceride homeostasis // not recorded /// 0090188 // negative regulation of pancreatic juice secretion // inferred from electronic annotation /// 0090188 // negative regulation of pancreatic juice secretion // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003707 // steroid hormone receptor activity // traceable author statement /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // not recorded /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0004884 // ecdysteroid hormone receptor activity // inferred from electronic annotation /// 0005496 // steroid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0032810 // sterol response element binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from direct assay 1387366_at NM_053412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053412.1 /DB_XREF=gi:16758149 /GEN=Ilf3 /FEA=FLmRNA /CNT=13 /TID=Rn.24511.1 /TIER=FL /STK=2 /UG=Rn.24511 /LL=84472 /DEF=Rattus norvegicus interleukin enhancer binding factor 3 (Ilf3), mRNA. /PROD=interleukin enhancer binding factor 3 /FL=gb:AF220102.1 gb:NM_053412.1 NM_053412 interleukin enhancer binding factor 3 Ilf3 84472 NM_053412 0006350 // transcription // inferred from electronic annotation /// 0006479 // protein methylation // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0019899 // enzyme binding // inferred from physical interaction 1387367_at NM_017211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017211.1 /DB_XREF=gi:8393449 /GEN=Selel /FEA=FLmRNA /CNT=12 /TID=Rn.10507.1 /TIER=FL /STK=2 /UG=Rn.10507 /LL=29476 /DEF=Rattus norvegicus selectin, endothelial cell, ligand (Selel), mRNA. /PROD=selectin, endothelial cell, ligand /FL=gb:U08136.1 gb:NM_017211.1 NM_017211 golgi apparatus protein 1 Glg1 29476 NM_017211 0006886 // intracellular protein transport // non-traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0000139 // Golgi membrane // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005797 // Golgi medial cisterna // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay 1387368_at NM_012981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012981.1 /DB_XREF=gi:6981221 /GEN=Mras /FEA=FLmRNA /CNT=11 /TID=Rn.10641.1 /TIER=FL /STK=2 /UG=Rn.10641 /LL=25482 /DEF=Rattus norvegicus Muscle and microspikes RAS (Mras), mRNA. /PROD=muscle and microspikes RAS /FL=gb:NM_012981.1 gb:D89863.1 NM_012981 muscle RAS oncogene homolog Mras 25482 NM_012981 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0030742 // GTP-dependent protein binding // inferred from electronic annotation /// 0030742 // GTP-dependent protein binding // not recorded 1387369_at NM_019277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019277.1 /DB_XREF=gi:9507076 /GEN=Sec15 /FEA=FLmRNA /CNT=10 /TID=Rn.1188.1 /TIER=FL /STK=2 /UG=Rn.1188 /LL=50556 /DEF=Rattus norvegicus SEC15 homolog (S. cerevisiae) (Sec15), mRNA. /PROD=SEC15 homolog (S. cerevisiae) /FL=gb:NM_019277.1 gb:AF032668.1 NM_019277 exocyst complex component 6 Exoc6 50556 NM_019277 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0000145 // exocyst // inferred from electronic annotation 1387370_at NM_013044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013044.1 /DB_XREF=gi:6981657 /GEN=Tmod /FEA=FLmRNA /CNT=10 /TID=Rn.1646.1 /TIER=FL /STK=2 /UG=Rn.1646 /LL=25566 /DEF=Rattus norvegicus E-Tropomodulin (Tmod), mRNA. /PROD=e-Tropomodulin /FL=gb:U59241.1 gb:NM_013044.1 NM_013044 tropomodulin 1 Tmod1 25566 NM_013044 0030239 // myofibril assembly // inferred from electronic annotation /// 0030239 // myofibril assembly // not recorded /// 0030241 // skeletal muscle myosin thick filament assembly // not recorded 0005634 // nucleus // inferred from mutant phenotype /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0030016 // myofibril // inferred from electronic annotation /// 0030016 // myofibril // not recorded /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005523 // tropomyosin binding // inferred from direct assay /// 0005523 // tropomyosin binding // inferred from electronic annotation 1387371_at NM_133571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133571.1 /DB_XREF=gi:19424257 /GEN=Cdc25a /FEA=FLmRNA /CNT=9 /TID=Rn.11390.1 /TIER=FL /STK=2 /UG=Rn.11390 /LL=171102 /DEF=Rattus norvegicus cell division cycle 25A (Cdc25a), mRNA. /PROD=cell division cycle 25A /FL=gb:NM_133571.1 gb:D16236.1 NM_133571 cell division cycle 25 homolog A (S. pombe) Cdc25a 171102 NM_133571 0000082 // G1/S transition of mitotic cell cycle // inferred from mutant phenotype /// 0000087 // M phase of mitotic cell cycle // inferred from electronic annotation /// 0006260 // DNA replication // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0004721 // phosphoprotein phosphatase activity // not recorded /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1387372_at NM_133623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133623.1 /DB_XREF=gi:19424347 /GEN=Slc6a13 /FEA=FLmRNA /CNT=9 /TID=Rn.10527.1 /TIER=FL /STK=2 /UG=Rn.10527 /LL=171163 /DEF=Rattus norvegicus solute carrier family 6 (neurotransmitter transporter, GABA), member 13 (Slc6a13), mRNA. /PROD=solute carrier family 6 (neurotransmittertransporter, GABA), member 13 /FL=gb:NM_133623.1 gb:M95762.1 NM_133623 solute carrier family 6 (neurotransmitter transporter, GABA), member 13 Slc6a13 171163 NM_133623 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from direct assay /// 0006836 // neurotransmitter transport // inferred from electronic annotation 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0005332 // gamma-aminobutyric acid:sodium symporter activity // inferred from direct assay /// 0005332 // gamma-aminobutyric acid:sodium symporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0042165 // neurotransmitter binding // inferred from direct assay 1387373_at NM_022382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022382.1 /DB_XREF=gi:11693143 /GEN=LOC64183 /FEA=FLmRNA /CNT=8 /TID=Rn.48693.1 /TIER=FL /STK=2 /UG=Rn.48693 /LL=64183 /DEF=Rattus norvegicus myomegalin (LOC64183), mRNA. /PROD=myomegalin /FL=gb:AF139185.1 gb:NM_022382.1 NM_022382 phosphodiesterase 4D interacting protein Pde4dip 64183 NM_022382 0043623 // cellular protein complex assembly // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030016 // myofibril // inferred from direct assay 0005515 // protein binding // not recorded /// 0019899 // enzyme binding // inferred from physical interaction 1387374_at NM_013176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013176.1 /DB_XREF=gi:6981635 /GEN=Tcf12 /FEA=FLmRNA /CNT=8 /TID=Rn.9916.1 /TIER=FL /STK=2 /UG=Rn.9916 /LL=25720 /DEF=Rattus norvegicus Transcription factor 12 (Tcf12), mRNA. /PROD=transcription factor 12 /FL=gb:L09656.1 gb:NM_013176.1 NM_013176 transcription factor 12 Tcf12 25720 NM_013176 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1387375_at NM_031855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031855.2 /DB_XREF=gi:18373338 /GEN=Khk /FEA=FLmRNA /CNT=8 /TID=Rn.33324.1 /TIER=FL /STK=2 /UG=Rn.33324 /LL=25659 /DEF=Rattus norvegicus Ketohexokinase (Khk), mRNA. /PROD=ketohexokinase /FL=gb:NM_031855.2 NM_031855 ketohexokinase Khk 25659 NM_031855 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006000 // fructose metabolic process // inferred from direct assay /// 0009744 // response to sucrose stimulus // inferred from direct assay /// 0009749 // response to glucose stimulus // inferred from direct assay /// 0009750 // response to fructose stimulus // inferred from expression pattern /// 0010043 // response to zinc ion // inferred from direct assay /// 0016052 // carbohydrate catabolic process // traceable author statement /// 0032868 // response to insulin stimulus // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004454 // ketohexokinase activity // inferred from direct assay /// 0004454 // ketohexokinase activity // traceable author statement /// 0004454 // ketohexokinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387376_at NM_019363 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019363.1 /DB_XREF=gi:9506386 /GEN=Aox1 /FEA=FLmRNA /CNT=7 /TID=Rn.15681.1 /TIER=FL /STK=2 /UG=Rn.15681 /LL=54349 /DEF=Rattus norvegicus aldehyde oxidase (Aox1), mRNA. /PROD=aldehyde oxidase /FL=gb:AF110477.1 gb:NM_019363.1 gb:AF110478.1 NM_019363 aldehyde oxidase 1 Aox1 54349 NM_019363 0006805 // xenobiotic metabolic process // traceable author statement /// 0008152 // metabolic process // not recorded /// 0017144 // drug metabolic process // traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004031 // aldehyde oxidase activity // inferred from direct assay /// 0004031 // aldehyde oxidase activity // not recorded /// 0004031 // aldehyde oxidase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation 1387377_a_at U23443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U23443.1 /DB_XREF=gi:2772513 /GEN=alpha-PAK /FEA=FLmRNA /CNT=1 /TID=Rn.9149.2 /TIER=FL /STK=1 /UG=Rn.9149 /LL=29431 /DEF=Rattus norvegicus serinethreonine protein kinase (alpha-PAK) mRNA, complete cds. /PROD=serinethreonine protein kinase /FL=gb:U23443.1 U23443 p21 protein (Cdc42/Rac)-activated kinase 1 Pak1 29431 NM_017198 0000165 // MAPKKK cascade // not recorded /// 0001666 // response to hypoxia // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // traceable author statement /// 0007264 // small GTPase mediated signal transduction // traceable author statement /// 0007528 // neuromuscular junction development // inferred from electronic annotation /// 0007528 // neuromuscular junction development // not recorded /// 0010033 // response to organic substance // inferred from direct assay /// 0016310 // phosphorylation // not recorded /// 0016358 // dendrite development // inferred from electronic annotation /// 0016358 // dendrite development // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from direct assay /// 0032956 // regulation of actin cytoskeleton organization // inferred from mutant phenotype /// 0033554 // cellular response to stress // inferred from direct assay /// 0043113 // receptor clustering // inferred from electronic annotation /// 0043113 // receptor clustering // not recorded /// 0043507 // positive regulation of JUN kinase activity // not recorded /// 0043507 // positive regulation of JUN kinase activity // inferred from sequence or structural similarity /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from sequence or structural similarity /// 0048812 // neuron projection morphogenesis // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0014704 // intercalated disc // inferred from direct assay /// 0030018 // Z disc // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from electronic annotation /// 0030426 // growth cone // not recorded /// 0031965 // nuclear membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004709 // MAP kinase kinase kinase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005518 // collagen binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction 1387378_at NM_053634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053634.1 /DB_XREF=gi:16758441 /GEN=Fcnb /FEA=FLmRNA /CNT=7 /TID=Rn.48281.1 /TIER=FL /STK=2 /UG=Rn.48281 /LL=114091 /DEF=Rattus norvegicus ficolin B (Fcnb), mRNA. /PROD=ficolin B /FL=gb:AB036792.1 gb:NM_053634.1 NM_053634 ficolin B Fcnb 114091 NM_053634 0001867 // complement activation, lectin pathway // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1387379_at NM_013022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013022.1 /DB_XREF=gi:6981477 /GEN=Rock2 /FEA=FLmRNA /CNT=12 /TID=Rn.11003.1 /TIER=FL /STK=2 /UG=Rn.11003 /LL=25537 /DEF=Rattus norvegicus RhoA - binding serinethreosine kinase alpha (ROK - alpha) (Rock2), mRNA. /PROD=rhoA - binding serinethreosine kinase alpha(ROK - alpha) /FL=gb:NM_013022.1 gb:U38481.1 NM_013022 Rho-associated coiled-coil containing protein kinase 2 Rock2 25537 NM_013022 0000910 // cytokinesis // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // inferred from mutant phenotype /// 0010825 // positive regulation of centrosome duplication // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0030261 // chromosome condensation // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031616 // spindle pole centrosome // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387380_at NM_031782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031782.1 /DB_XREF=gi:13929105 /GEN=Viaat /FEA=FLmRNA /CNT=12 /TID=Rn.10846.1 /TIER=FL /STK=2 /UG=Rn.10846 /LL=83612 /DEF=Rattus norvegicus vesicular inhibitory amino acid transporter (Viaat), mRNA. /PROD=vesicular inhibitory amino acid transporter /FL=gb:AF030253.1 gb:NM_031782.1 NM_031782 solute carrier family 32 (GABA vesicular transporter), member 1 Slc32a1 83612 NM_031782 0003333 // amino acid transmembrane transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // traceable author statement /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0015812 // gamma-aminobutyric acid transport // not recorded /// 0015816 // glycine transport // not recorded /// 0015816 // glycine transport // traceable author statement /// 0015816 // glycine transport // inferred from electronic annotation /// 0015992 // proton transport // not recorded /// 0071436 // sodium ion export // not recorded 0008021 // synaptic vesicle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay /// 0060077 // inhibitory synapse // inferred from electronic annotation /// 0060077 // inhibitory synapse // not recorded 0005276 // vesicular hydrogen:amino acid antiporter activity // not recorded /// 0015187 // glycine transmembrane transporter activity // not recorded /// 0015187 // glycine transmembrane transporter activity // traceable author statement /// 0015187 // glycine transmembrane transporter activity // inferred from electronic annotation /// 0015495 // gamma-aminobutyric acid:hydrogen symporter activity // inferred from electronic annotation /// 0015495 // gamma-aminobutyric acid:hydrogen symporter activity // not recorded 1387381_at NM_031790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031790.1 /DB_XREF=gi:13929119 /GEN=Cit /FEA=FLmRNA /CNT=9 /TID=Rn.10876.1 /TIER=FL /STK=2 /UG=Rn.10876 /LL=83620 /DEF=Rattus norvegicus postsynaptic density protein (citron) (Cit), mRNA. /PROD=postsynaptic density protein (citron) /FL=gb:AF039218.1 gb:NM_031790.1 NM_031790 citron Cit 83620 NM_001029911 0000070 // mitotic sister chromatid segregation // not recorded /// 0000070 // mitotic sister chromatid segregation // inferred from electronic annotation /// 0000086 // G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 0000086 // G2/M transition of mitotic cell cycle // non-traceable author statement /// 0000910 // cytokinesis // not recorded /// 0000910 // cytokinesis // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007030 // Golgi organization // inferred from mutant phenotype /// 0007067 // mitosis // not recorded /// 0007067 // mitosis // inferred from electronic annotation /// 0007091 // mitotic metaphase/anaphase transition // not recorded /// 0007091 // mitotic metaphase/anaphase transition // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008064 // regulation of actin polymerization or depolymerization // inferred from direct assay /// 0016310 // phosphorylation // not recorded /// 0016358 // dendrite development // not recorded /// 0016358 // dendrite development // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from mutant phenotype /// 0048699 // generation of neurons // not recorded /// 0048699 // generation of neurons // inferred from electronic annotation /// 0050774 // negative regulation of dendrite morphogenesis // not recorded /// 0050774 // negative regulation of dendrite morphogenesis // inferred from electronic annotation /// 0051726 // regulation of cell cycle // non-traceable author statement 0001726 // ruffle // not recorded /// 0001726 // ruffle // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005773 // vacuole // not recorded /// 0005773 // vacuole // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from mutant phenotype /// 0015629 // actin cytoskeleton // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation 1387382_at NM_031044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031044.1 /DB_XREF=gi:13591970 /GEN=Hnmt /FEA=FLmRNA /CNT=9 /TID=Rn.13145.1 /TIER=FL /STK=2 /UG=Rn.13145 /LL=81676 /DEF=Rattus norvegicus histamine N-methyltransferase (Hnmt), mRNA. /PROD=histamine N-methyltransferase /FL=gb:NM_031044.1 gb:D10693.1 NM_031044 histamine N-methyltransferase Hnmt 81676 NM_031044 0002347 // response to tumor cell // inferred from expression pattern /// 0006950 // response to stress // inferred from expression pattern /// 0006972 // hyperosmotic response // inferred from expression pattern /// 0007420 // brain development // inferred from expression pattern /// 0014075 // response to amine stimulus // inferred from expression pattern /// 0032259 // methylation // not recorded /// 0042220 // response to cocaine // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0070555 // response to interleukin-1 // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008170 // N-methyltransferase activity // not recorded /// 0008170 // N-methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046539 // histamine N-methyltransferase activity // inferred from direct assay /// 0046539 // histamine N-methyltransferase activity // inferred from electronic annotation 1387383_at NM_031802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031802.1 /DB_XREF=gi:13929137 /GEN=Gpr51 /FEA=FLmRNA /CNT=8 /TID=Rn.30039.1 /TIER=FL /STK=2 /UG=Rn.30039 /LL=83633 /DEF=Rattus norvegicus G protein-coupled receptor 51 (Gpr51), mRNA. /PROD=G protein-coupled receptor 51 /FL=gb:AF074482.1 gb:AF058795.1 gb:NM_031802.1 gb:AF109405.1 NM_031802 gamma-aminobutyric acid (GABA) B receptor 2 Gabbr2 83633 NM_031802 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004965 // GABA-B receptor activity // inferred from direct assay /// 0004965 // GABA-B receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387384_at NM_033299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_033299.1 /DB_XREF=gi:15193295 /GEN=Pld2 /FEA=FLmRNA /CNT=8 /TID=Rn.9798.1 /TIER=FL /STK=2 /UG=Rn.9798 /LL=25097 /DEF=Rattus norvegicus Phoshpolipase D gene 2 (Pld2), mRNA. /PROD=phoshpolipase D gene 2 /FL=gb:NM_033299.1 gb:D88672.1 gb:AB003172.1 NM_033299 phospholipase D2 Pld2 25097 NM_033299 0001666 // response to hypoxia // inferred from direct assay /// 0002031 // G-protein coupled receptor internalization // inferred from electronic annotation /// 0002031 // G-protein coupled receptor internalization // not recorded /// 0006898 // receptor-mediated endocytosis // not recorded /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009395 // phospholipid catabolic process // inferred from mutant phenotype /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0042542 // response to hydrogen peroxide // inferred from mutant phenotype /// 0043306 // positive regulation of mast cell degranulation // inferred from mutant phenotype /// 0043434 // response to peptide hormone stimulus // inferred from mutant phenotype /// 0045785 // positive regulation of cell adhesion // inferred from mutant phenotype /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from direct assay /// 0031526 // brush border membrane // inferred from electronic annotation /// 0031526 // brush border membrane // not recorded /// 0042383 // sarcolemma // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004630 // phospholipase D activity // inferred from direct assay /// 0004630 // phospholipase D activity // inferred from electronic annotation /// 0005080 // protein kinase C binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation /// 0070290 // NAPE-specific phospholipase D activity // inferred from electronic annotation 1387385_at NM_057118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057118.1 /DB_XREF=gi:16923963 /GEN=Cntn1 /FEA=FLmRNA /CNT=8 /TID=Rn.21397.1 /TIER=FL /STK=2 /UG=Rn.21397 /LL=117258 /DEF=Rattus norvegicus contactin 1 (Cntn1), mRNA. /PROD=contactin 1 /FL=gb:D38492.1 gb:NM_057118.1 NM_057118 contactin 1 Cntn1 117258 NM_057118 0007155 // cell adhesion // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0090072 // positive regulation of sodium ion transport via voltage-gated sodium channel activity // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 1387386_at NM_053832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053832.1 /DB_XREF=gi:16758685 /GEN=Foxj1 /FEA=FLmRNA /CNT=8 /TID=Rn.10080.1 /TIER=FL /STK=2 /UG=Rn.10080 /LL=116557 /DEF=Rattus norvegicus forkhead box J1 (Foxj1), mRNA. /PROD=forkhead box J1 /FL=gb:L36388.1 gb:NM_053832.1 NM_053832 forkhead box J1 Foxj1 116557 NM_053832 0002508 // central tolerance induction // not recorded /// 0002635 // negative regulation of germinal center formation // not recorded /// 0002897 // positive regulation of central B cell tolerance induction // not recorded /// 0002924 // negative regulation of humoral immune response mediated by circulating immunoglobulin // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006959 // humoral immune response // not recorded /// 0007283 // spermatogenesis // inferred from expression pattern /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030036 // actin cytoskeleton organization // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032862 // activation of Rho GTPase activity // not recorded /// 0033085 // negative regulation of T cell differentiation in thymus // not recorded /// 0035089 // establishment of apical/basal cell polarity // not recorded /// 0042130 // negative regulation of T cell proliferation // not recorded /// 0042384 // cilium assembly // not recorded /// 0045409 // negative regulation of interleukin-6 biosynthetic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0050869 // negative regulation of B cell activation // not recorded /// 0050900 // leukocyte migration // not recorded /// 0060972 // left/right pattern formation // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1387387_at NM_017122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017122.1 /DB_XREF=gi:8850220 /GEN=Hpca /FEA=FLmRNA /CNT=8 /TID=Rn.11019.1 /TIER=FL /STK=2 /UG=Rn.11019 /LL=29177 /DEF=Rattus norvegicus hippocalcin (Hpca), mRNA. /PROD=hippocalcin /FL=gb:NM_017122.1 gb:D12573.1 NM_017122 hippocalcin Hpca 29177 NM_017122 0003779 // actin binding // not recorded /// 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1387388_at AB070350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB070350.1 /DB_XREF=gi:15277205 /GEN=CHP /FEA=FLmRNA /CNT=8 /TID=Rn.11041.1 /TIER=FL /STK=2 /UG=Rn.11041 /LL=64152 /DEF=Rattus norvegicus CHP mRNA for calcineurin homologous protein, complete cds. /PROD=calcineurin homologous protein /FL=gb:NM_024139.1 gb:U39875.1 gb:AB070350.1 AB070350 calcium binding protein p22 Chp 64152 NM_024139 0017156 // calcium ion-dependent exocytosis // inferred from direct assay /// 0019722 // calcium-mediated signaling // traceable author statement /// 0045056 // transcytosis // inferred from genetic interaction 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1387389_at NM_020100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020100.1 /DB_XREF=gi:9910523 /GEN=Ramp3 /FEA=FLmRNA /CNT=8 /TID=Rn.48672.1 /TIER=FL /STK=2 /UG=Rn.48672 /LL=56820 /DEF=Rattus norvegicus receptor activity modifying protein 3 (Ramp3), mRNA. /PROD=receptor activity modifying protein 3 /FL=gb:AF181552.2 gb:NM_020100.1 gb:AB030944.1 gb:AB042889.1 NM_020100 receptor (G protein-coupled) activity modifying protein 3 Ramp3 56820 NM_020100 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001664 // G-protein-coupled receptor binding // non-traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0015026 // coreceptor activity // inferred from direct assay /// 0015026 // coreceptor activity // not recorded /// 0046982 // protein heterodimerization activity // non-traceable author statement 1387390_at NM_017119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017119.1 /DB_XREF=gi:8393512 /GEN=Gzmk /FEA=FLmRNA /CNT=7 /TID=Rn.11190.1 /TIER=FL /STK=2 /UG=Rn.11190 /LL=29165 /DEF=Rattus norvegicus granzyme K (Gzmk), mRNA. /PROD=granzyme K /FL=gb:NM_017119.1 gb:L19694.1 NM_017119 granzyme K Gzmk 29165 NM_017119 0006508 // proteolysis // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from direct assay /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387391_at U24174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U24174.1 /DB_XREF=gi:902581 /GEN=WAF1 /FEA=FLmRNA /CNT=7 /TID=Rn.10089.1 /TIER=FL /STK=2 /UG=Rn.10089 /LL=114851 /DEF=Rattus norvegicus p21 (WAF1) mRNA, complete cds. /PROD=p21 /FL=gb:NM_080782.1 gb:U24174.1 U24174 cyclin-dependent kinase inhibitor 1A Cdkn1a 114851 NM_080782 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0000086 // G2/M transition of mitotic cell cycle // inferred from electronic annotation /// 0000086 // G2/M transition of mitotic cell cycle // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // inferred from electronic annotation /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // not recorded /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0007265 // Ras protein signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009411 // response to UV // inferred from electronic annotation /// 0009411 // response to UV // not recorded /// 0009636 // response to toxin // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0031668 // cellular response to extracellular stimulus // not recorded /// 0042326 // negative regulation of phosphorylation // inferred from electronic annotation /// 0042326 // negative regulation of phosphorylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043068 // positive regulation of programmed cell death // inferred from electronic annotation /// 0043068 // positive regulation of programmed cell death // not recorded /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // not recorded /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0046685 // response to arsenic // inferred from expression pattern /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded /// 0055093 // response to hyperoxia // inferred from expression pattern 0000307 // cyclin-dependent protein kinase holoenzyme complex // inferred from electronic annotation /// 0000307 // cyclin-dependent protein kinase holoenzyme complex // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0070557 // PCNA-p21 complex // not recorded 0004861 // cyclin-dependent protein kinase inhibitor activity // inferred from electronic annotation /// 0004861 // cyclin-dependent protein kinase inhibitor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0030332 // cyclin binding // inferred from electronic annotation /// 0030332 // cyclin binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction 1387392_at NM_013217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013217.1 /DB_XREF=gi:6978468 /GEN=AF-6 /FEA=FLmRNA /CNT=6 /TID=Rn.58.1 /TIER=FL /STK=2 /UG=Rn.58 /LL=26955 /DEF=Rattus norvegicus afadin (AF-6), mRNA. /PROD=afadin /FL=gb:NM_013217.1 gb:U83230.1 NM_013217 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 Mllt4 26955 NM_013217 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005912 // adherens junction // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0005913 // cell-cell adherens junction // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030054 // cell junction // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030274 // LIM domain binding // inferred from physical interaction /// 0050839 // cell adhesion molecule binding // not recorded 1387393_at NM_031639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031639.1 /DB_XREF=gi:13928877 /GEN=Dlgh3 /FEA=FLmRNA /CNT=6 /TID=Rn.10238.1 /TIER=FL /STK=2 /UG=Rn.10238 /LL=58948 /DEF=Rattus norvegicus discs, large homolog 3 (Drosophila) (Dlgh3), mRNA. /PROD=discs, large homolog 3 (Drosophila) /FL=gb:U50147.1 gb:NM_031639.1 NM_031639 discs, large homolog 3 (Drosophila) Dlg3 58948 NM_031639 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // traceable author statement /// 0030426 // growth cone // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from direct assay /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction 1387394_at NM_013195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013195.1 /DB_XREF=gi:6981097 /GEN=Il2rb /FEA=FLmRNA /CNT=6 /TID=Rn.5832.1 /TIER=FL /STK=2 /UG=Rn.5832 /LL=25746 /DEF=Rattus norvegicus Interleukin 2 receptor, beta chain (Il2rb), mRNA. /PROD=interleukin 2 receptor, beta chain /FL=gb:NM_013195.1 gb:M55050.1 NM_013195 interleukin 2 receptor, beta Il2rb 25746 NM_013195 0019221 // cytokine-mediated signaling pathway // inferred from expression pattern /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0030101 // natural killer cell activation // inferred from mutant phenotype /// 0045885 // positive regulation of survival gene product expression // not recorded 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004911 // interleukin-2 receptor activity // inferred from mutant phenotype /// 0004911 // interleukin-2 receptor activity // not recorded /// 0019976 // interleukin-2 binding // inferred from mutant phenotype /// 0019976 // interleukin-2 binding // not recorded 1387395_at NM_017161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017161.1 /DB_XREF=gi:8392863 /GEN=Adora2b /FEA=FLmRNA /CNT=6 /TID=Rn.10428.1 /TIER=FL /STK=2 /UG=Rn.10428 /LL=29316 /DEF=Rattus norvegicus Adenosine A2b receptor (Adora2b), mRNA. /PROD=Adenosine A2b receptor /FL=gb:NM_017161.1 gb:M91466.1 NM_017161 adenosine A2B receptor Adora2b 29316 NM_017161 0002882 // positive regulation of chronic inflammatory response to non-antigenic stimulus // inferred from electronic annotation /// 0002882 // positive regulation of chronic inflammatory response to non-antigenic stimulus // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0010575 // positive regulation vascular endothelial growth factor production // inferred from electronic annotation /// 0010575 // positive regulation vascular endothelial growth factor production // not recorded /// 0010701 // positive regulation of norepinephrine secretion // inferred from mutant phenotype /// 0010893 // positive regulation of steroid biosynthetic process // inferred from mutant phenotype /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from mutant phenotype /// 0030819 // positive regulation of cAMP biosynthetic process // not recorded /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0030828 // positive regulation of cGMP biosynthetic process // inferred from electronic annotation /// 0030828 // positive regulation of cGMP biosynthetic process // not recorded /// 0031284 // positive regulation of guanylate cyclase activity // inferred from electronic annotation /// 0031284 // positive regulation of guanylate cyclase activity // not recorded /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0031668 // cellular response to extracellular stimulus // not recorded /// 0032722 // positive regulation of chemokine production // inferred from electronic annotation /// 0032722 // positive regulation of chemokine production // not recorded /// 0032755 // positive regulation of interleukin-6 production // inferred from electronic annotation /// 0032755 // positive regulation of interleukin-6 production // not recorded /// 0032966 // negative regulation of collagen biosynthetic process // inferred from mutant phenotype /// 0033605 // positive regulation of catecholamine secretion // inferred from mutant phenotype /// 0043306 // positive regulation of mast cell degranulation // inferred from electronic annotation /// 0043306 // positive regulation of mast cell degranulation // not recorded /// 0045765 // regulation of angiogenesis // inferred from mutant phenotype /// 0045909 // positive regulation of vasodilation // inferred from mutant phenotype /// 0060087 // relaxation of vascular smooth muscle // inferred from electronic annotation /// 0060087 // relaxation of vascular smooth muscle // not recorded 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001609 // adenosine receptor activity, G-protein coupled // inferred from mutant phenotype /// 0001609 // adenosine receptor activity, G-protein coupled // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // not recorded 1387396_at NM_053469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053469.1 /DB_XREF=gi:16758217 /GEN=Hamp /FEA=FLmRNA /CNT=6 /TID=Rn.7865.1 /TIER=FL /STK=2 /UG=Rn.7865 /LL=84604 /DEF=Rattus norvegicus hepcidin antimicrobial peptide (Hamp), mRNA. /PROD=hepcidin antimicrobial peptide /FL=gb:NM_053469.1 gb:AF344185.1 NM_053469 hepcidin antimicrobial peptide Hamp 84604 NM_053469 0006879 // cellular iron ion homeostasis // inferred from direct assay /// 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0042742 // defense response to bacterium // not recorded /// 0050832 // defense response to fungus // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0045179 // apical cortex // inferred from direct assay 0005179 // hormone activity // inferred from electronic annotation 1387397_at NM_012825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012825.1 /DB_XREF=gi:6978530 /GEN=Aqp4 /FEA=FLmRNA /CNT=10 /TID=Rn.10020.1 /TIER=FL /STK=2 /UG=Rn.10020 /LL=25293 /DEF=Rattus norvegicus Aquaporin 4 (Aqp4), mRNA. /PROD=aquaporin 4 /FL=gb:AF144082.1 gb:U14007.1 gb:NM_012825.1 gb:L27588.1 NM_012825 aquaporin 4 Aqp4 25293 NM_001142366 /// NM_012825 0006810 // transport // inferred from electronic annotation /// 0006833 // water transport // inferred from direct assay /// 0006833 // water transport // not recorded /// 0006833 // water transport // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0015670 // carbon dioxide transport // inferred from direct assay /// 0030104 // water homeostasis // not recorded /// 0030104 // water homeostasis // inferred from electronic annotation /// 0042538 // hyperosmotic salinity response // inferred from expression pattern /// 0050891 // multicellular organismal water homeostasis // not recorded /// 0050891 // multicellular organismal water homeostasis // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055085 // transmembrane transport // not recorded /// 0070295 // renal water absorption // not recorded /// 0070295 // renal water absorption // inferred from electronic annotation /// 0071346 // cellular response to interferon-gamma // not recorded /// 0071346 // cellular response to interferon-gamma // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0005911 // cell-cell junction // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0015250 // water channel activity // inferred from direct assay /// 0015250 // water channel activity // not recorded /// 0015250 // water channel activity // inferred from electronic annotation /// 0015288 // porin activity // inferred from direct assay 1387398_at AA996685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996685 /DB_XREF=gi:4280451 /DB_XREF=UI-R-C0-hf-f-08-0-UI.s1 /CLONE=UI-R-C0-hf-f-08-0-UI /FEA=FLmRNA /CNT=10 /TID=Rn.37613.1 /TIER=ConsEnd /STK=1 /UG=Rn.37613 /LL=114906 /UG_GENE=Pkia /UG_TITLE=protein kinase inhibitor, alpha /FL=gb:L02615.1 gb:NM_053772.1 AA996685 protein kinase (cAMP-dependent, catalytic) inhibitor alpha Pkia 114906 NM_053772 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006469 // negative regulation of protein kinase activity // traceable author statement /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0010389 // regulation of G2/M transition of mitotic cell cycle // inferred from electronic annotation /// 0010389 // regulation of G2/M transition of mitotic cell cycle // not recorded /// 0042308 // negative regulation of protein import into nucleus // inferred from electronic annotation /// 0042308 // negative regulation of protein import into nucleus // not recorded /// 0042326 // negative regulation of phosphorylation // not recorded /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // not recorded 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0004862 // cAMP-dependent protein kinase inhibitor activity // inferred from electronic annotation /// 0004862 // cAMP-dependent protein kinase inhibitor activity // not recorded 1387399_at NM_020098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020098.1 /DB_XREF=gi:10048482 /GEN=LOC56768 /FEA=FLmRNA /CNT=9 /TID=Rn.53925.1 /TIER=FL /STK=2 /UG=Rn.53925 /LL=56768 /DEF=Rattus norvegicus multidomain presynaptic cytomatrix protein Piccolo (LOC56768), mRNA. /PROD=multidomain presynaptic cytomatrix proteinPiccolo /FL=gb:AF227534.1 gb:NM_020098.1 gb:AF138789.2 NM_020098 piccolo (presynaptic cytomatrix protein) Pclo 56768 NM_001110797 /// NM_020098 0006810 // transport // inferred from electronic annotation /// 0007010 // cytoskeleton organization // not recorded /// 0007010 // cytoskeleton organization // inferred from sequence or structural similarity /// 0016080 // synaptic vesicle targeting // non-traceable author statement /// 0017157 // regulation of exocytosis // not recorded /// 0019933 // cAMP-mediated signaling // not recorded /// 0030073 // insulin secretion // not recorded 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0005215 // transporter activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005522 // profilin binding // not recorded /// 0005522 // profilin binding // inferred from sequence or structural similarity /// 0005544 // calcium-dependent phospholipid binding // inferred from direct assay /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387400_at AF001423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF001423.1 /DB_XREF=gi:2155309 /FEA=FLmRNA /CNT=9 /TID=Rn.9710.1 /TIER=FL /STK=1 /UG=Rn.9710 /LL=24409 /UG_GENE=Grin2a /DEF=Rattus norvegicus N-methyl-D-aspartate receptor NMDAR2A subunit mRNA, complete cds. /PROD=N-methyl-D-aspartate receptor NMDAR2A subunit /FL=gb:M91561.1 gb:NM_012573.1 gb:AF001423.1 AF001423 glutamate receptor, ionotropic, N-methyl D-aspartate 2A Grin2a 24409 NM_012573 0001508 // regulation of action potential // inferred from mutant phenotype /// 0001964 // startle response // inferred from electronic annotation /// 0001964 // startle response // not recorded /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0001975 // response to amphetamine // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0007165 // signal transduction // not recorded /// 0007268 // synaptic transmission // inferred from mutant phenotype /// 0007268 // synaptic transmission // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007611 // learning or memory // not recorded /// 0007611 // learning or memory // inferred from electronic annotation /// 0007612 // learning // inferred from electronic annotation /// 0007612 // learning // not recorded /// 0007613 // memory // inferred from direct assay /// 0007613 // memory // not recorded /// 0007613 // memory // inferred from electronic annotation /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0008542 // visual learning // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0009416 // response to light stimulus // inferred from expression pattern /// 0009611 // response to wounding // inferred from electronic annotation /// 0009611 // response to wounding // not recorded /// 0009743 // response to carbohydrate stimulus // inferred from expression pattern /// 0010042 // response to manganese ion // inferred from expression pattern /// 0010942 // positive regulation of cell death // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014075 // response to amine stimulus // inferred from expression pattern /// 0019233 // sensory perception of pain // not recorded /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0021510 // spinal cord development // inferred from expression pattern /// 0021766 // hippocampus development // inferred from expression pattern /// 0021987 // cerebral cortex development // inferred from expression pattern /// 0022008 // neurogenesis // inferred from electronic annotation /// 0022008 // neurogenesis // not recorded /// 0030431 // sleep // inferred from electronic annotation /// 0030431 // sleep // not recorded /// 0033058 // directional locomotion // inferred from electronic annotation /// 0033058 // directional locomotion // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from direct assay /// 0040011 // locomotion // not recorded /// 0040011 // locomotion // inferred from electronic annotation /// 0042177 // negative regulation of protein catabolic process // inferred from electronic annotation /// 0042177 // negative regulation of protein catabolic process // not recorded /// 0042220 // response to cocaine // inferred from expression pattern /// 0042391 // regulation of membrane potential // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042417 // dopamine metabolic process // inferred from electronic annotation /// 0042417 // dopamine metabolic process // not recorded /// 0042428 // serotonin metabolic process // inferred from electronic annotation /// 0042428 // serotonin metabolic process // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0045471 // response to ethanol // not recorded /// 0045471 // response to ethanol // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // not recorded /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from mutant phenotype /// 0048511 // rhythmic process // inferred from direct assay /// 0050804 // regulation of synaptic transmission // not recorded /// 0050804 // regulation of synaptic transmission // inferred from electronic annotation /// 0050966 // detection of mechanical stimulus involved in sensory perception of pain // not recorded /// 0051592 // response to calcium ion // inferred from expression pattern /// 0051597 // response to methylmercury // inferred from expression pattern /// 0051707 // response to other organism // inferred from expression pattern /// 0051930 // regulation of sensory perception of pain // inferred from electronic annotation /// 0051930 // regulation of sensory perception of pain // not recorded /// 0060078 // regulation of postsynaptic membrane potential // not recorded /// 0060078 // regulation of postsynaptic membrane potential // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from mutant phenotype /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060359 // response to ammonium ion // inferred from expression pattern /// 0060992 // response to fungicide // inferred from expression pattern /// 0070588 // calcium ion transmembrane transport // not recorded /// 0071230 // cellular response to amino acid stimulus // inferred from mutant phenotype /// 0071286 // cellular response to magnesium ion // inferred from expression pattern /// 0071287 // cellular response to manganese ion // inferred from expression pattern /// 0071294 // cellular response to zinc ion // inferred from mutant phenotype /// 0071359 // cellular response to dsRNA // inferred from expression pattern /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern /// 0071396 // cellular response to lipid // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from mutant phenotype 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // not recorded /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016600 // flotillin complex // inferred from physical interaction /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // inferred from direct assay /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // not recorded /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030288 // outer membrane-bounded periplasmic space // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0042734 // presynaptic membrane // not recorded /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0045202 // synapse // not recorded /// 0045202 // synapse // traceable author statement /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0045211 // postsynaptic membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from direct assay /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from mutant phenotype /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from direct assay /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from mutant phenotype /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // not recorded /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from mutant phenotype /// 0005261 // cation channel activity // inferred from direct assay /// 0005261 // cation channel activity // not recorded /// 0005261 // cation channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0016595 // glutamate binding // inferred from mutant phenotype /// 0019901 // protein kinase binding // inferred from physical interaction /// 0022843 // voltage-gated cation channel activity // inferred from mutant phenotype /// 0032403 // protein complex binding // inferred from physical interaction /// 0035254 // glutamate receptor binding // inferred from physical interaction /// 0042165 // neurotransmitter binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050839 // cell adhesion molecule binding // inferred from physical interaction /// 0051117 // ATPase binding // inferred from physical interaction 1387401_at NM_017131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017131.1 /DB_XREF=gi:8567333 /GEN=Casq2 /FEA=FLmRNA /CNT=9 /TID=Rn.10111.1 /TIER=FL /STK=2 /UG=Rn.10111 /LL=29209 /DEF=Rattus norvegicus calsequestrin 2 (Casq2), mRNA. /PROD=calsequestrin 2 /FL=gb:NM_017131.1 gb:U33287.1 NM_017131 calsequestrin 2 (cardiac muscle) Casq2 29209 NM_017131 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0033018 // sarcoplasmic reticulum lumen // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1387402_at NM_013194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013194.1 /DB_XREF=gi:6981235 /GEN=Myh9 /FEA=FLmRNA /CNT=8 /TID=Rn.11385.1 /TIER=FL /STK=2 /UG=Rn.11385 /LL=25745 /DEF=Rattus norvegicus Myosin, heavy polypeptide 9, non-muscle (Myh9), mRNA. /PROD=myosin, heavy polypeptide 9, non-muscle /FL=gb:NM_013194.1 gb:U31463.1 NM_013194 myosin, heavy chain 9, non-muscle Myh9 25745 NM_013194 0000212 // meiotic spindle organization // inferred from electronic annotation /// 0000212 // meiotic spindle organization // not recorded /// 0000904 // cell morphogenesis involved in differentiation // inferred from electronic annotation /// 0000904 // cell morphogenesis involved in differentiation // not recorded /// 0000910 // cytokinesis // not recorded /// 0000910 // cytokinesis // inferred from sequence or structural similarity /// 0000910 // cytokinesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from sequence or structural similarity /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001768 // establishment of T cell polarity // inferred from electronic annotation /// 0001768 // establishment of T cell polarity // not recorded /// 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0006509 // membrane protein ectodomain proteolysis // inferred from sequence or structural similarity /// 0006509 // membrane protein ectodomain proteolysis // inferred from electronic annotation /// 0006928 // cellular component movement // inferred from electronic annotation /// 0006928 // cellular component movement // not recorded /// 0007132 // meiotic metaphase I // inferred from electronic annotation /// 0007132 // meiotic metaphase I // not recorded /// 0007155 // cell adhesion // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007520 // myoblast fusion // inferred from electronic annotation /// 0007520 // myoblast fusion // not recorded /// 0008360 // regulation of cell shape // not recorded /// 0008360 // regulation of cell shape // inferred from sequence or structural similarity /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0015031 // protein transport // not recorded /// 0015031 // protein transport // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0030048 // actin filament-based movement // not recorded /// 0030048 // actin filament-based movement // inferred from sequence or structural similarity /// 0030048 // actin filament-based movement // inferred from electronic annotation /// 0030220 // platelet formation // not recorded /// 0030220 // platelet formation // inferred from sequence or structural similarity /// 0030220 // platelet formation // inferred from electronic annotation /// 0030224 // monocyte differentiation // not recorded /// 0030224 // monocyte differentiation // inferred from sequence or structural similarity /// 0030224 // monocyte differentiation // inferred from electronic annotation /// 0031532 // actin cytoskeleton reorganization // not recorded /// 0031532 // actin cytoskeleton reorganization // inferred from sequence or structural similarity /// 0031532 // actin cytoskeleton reorganization // inferred from electronic annotation /// 0032796 // uropod organization // inferred from electronic annotation /// 0032796 // uropod organization // not recorded /// 0043534 // blood vessel endothelial cell migration // not recorded /// 0043534 // blood vessel endothelial cell migration // inferred from sequence or structural similarity /// 0043534 // blood vessel endothelial cell migration // inferred from electronic annotation /// 0051295 // establishment of meiotic spindle localization // inferred from electronic annotation /// 0051295 // establishment of meiotic spindle localization // not recorded 0001725 // stress fiber // not recorded /// 0001725 // stress fiber // inferred from sequence or structural similarity /// 0001725 // stress fiber // inferred from electronic annotation /// 0001726 // ruffle // not recorded /// 0001726 // ruffle // inferred from sequence or structural similarity /// 0001726 // ruffle // inferred from electronic annotation /// 0001772 // immunological synapse // inferred from electronic annotation /// 0001772 // immunological synapse // not recorded /// 0001931 // uropod // inferred from electronic annotation /// 0001931 // uropod // not recorded /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005819 // spindle // not recorded /// 0005826 // actomyosin contractile ring // not recorded /// 0005826 // actomyosin contractile ring // inferred from sequence or structural similarity /// 0005826 // actomyosin contractile ring // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // not recorded /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0008305 // integrin complex // not recorded /// 0008305 // integrin complex // inferred from sequence or structural similarity /// 0008305 // integrin complex // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0015629 // actin cytoskeleton // inferred from sequence or structural similarity /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016459 // myosin complex // inferred from electronic annotation /// 0016459 // myosin complex // not recorded /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // not recorded /// 0031252 // cell leading edge // not recorded /// 0031252 // cell leading edge // inferred from sequence or structural similarity /// 0031252 // cell leading edge // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0031594 // neuromuscular junction // not recorded /// 0032154 // cleavage furrow // not recorded /// 0032154 // cleavage furrow // inferred from sequence or structural similarity /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from sequence or structural similarity /// 0043234 // protein complex // inferred from electronic annotation 0000146 // microfilament motor activity // not recorded /// 0000146 // microfilament motor activity // inferred from sequence or structural similarity /// 0000146 // microfilament motor activity // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0003779 // actin binding // inferred from electronic annotation /// 0005391 // sodium:potassium-exchanging ATPase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016887 // ATPase activity // not recorded /// 0016887 // ATPase activity // inferred from sequence or structural similarity /// 0016887 // ATPase activity // inferred from electronic annotation /// 0030898 // actin-dependent ATPase activity // inferred from electronic annotation /// 0030898 // actin-dependent ATPase activity // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0043495 // protein anchor // not recorded /// 0043495 // protein anchor // inferred from sequence or structural similarity /// 0043495 // protein anchor // inferred from electronic annotation /// 0043531 // ADP binding // inferred from electronic annotation /// 0043531 // ADP binding // not recorded /// 0051015 // actin filament binding // not recorded /// 0051015 // actin filament binding // inferred from sequence or structural similarity /// 0051015 // actin filament binding // inferred from electronic annotation 1387403_at NM_019344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019344.1 /DB_XREF=gi:9507048 /GEN=Rgs8 /FEA=FLmRNA /CNT=8 /TID=Rn.10858.1 /TIER=FL /STK=2 /UG=Rn.10858 /LL=54297 /DEF=Rattus norvegicus regulator of G-protein signaling 8 (Rgs8), mRNA. /PROD=regulator of G-protein signaling 8 /FL=gb:NM_019344.1 gb:AB006013.1 NM_019344 regulator of G-protein signaling 8 Rgs8 54297 NM_019344 0009968 // negative regulation of signal transduction // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation 1387404_at NM_078620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_078620.1 /DB_XREF=gi:17530968 /GEN=Slc8a3 /FEA=FLmRNA /CNT=7 /TID=Rn.67030.1 /TIER=FL /STK=2 /UG=Rn.67030 /LL=140448 /DEF=Rattus norvegicus solute carrier family 8 (sodiumcalcium exchanger), member 3 (Slc8a3), mRNA. /PROD=solute carrier family 8 (sodiumcalciumexchanger), member 3 /FL=gb:NM_078620.1 gb:U53420.1 NM_078620 solute carrier family 8 (sodium/calcium exchanger), member 3 Slc8a3 140448 NM_078620 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0021537 // telencephalon development // inferred from expression pattern /// 0030001 // metal ion transport // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060402 // calcium ion transport into cytosol // inferred from direct assay /// 0071320 // cellular response to cAMP // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from direct assay /// 0042995 // cell projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0005432 // calcium:sodium antiporter activity // inferred from direct assay /// 0005432 // calcium:sodium antiporter activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation /// 0015368 // calcium:cation antiporter activity // not recorded 1387405_at NM_020083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020083.1 /DB_XREF=gi:9910327 /GEN=Tulip1 /FEA=FLmRNA /CNT=7 /TID=Rn.10887.1 /TIER=FL /STK=2 /UG=Rn.10887 /LL=56785 /DEF=Rattus norvegicus tuberin-like protein 1 (Tulip1), mRNA. /PROD=tuberin-like protein 1 /FL=gb:AF041106.1 gb:NM_020083.1 NM_020083 GTPase activating Rap/RanGAP domain-like 1 Garnl1 56785 NM_020083 /// XM_001079197 /// XM_578542 0032859 // activation of Ral GTPase activity // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // not recorded /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017123 // Ral GTPase activator activity // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // not recorded 1387406_at NM_017293 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017293.1 /DB_XREF=gi:8393667 /GEN=Kis /FEA=FLmRNA /CNT=7 /TID=Rn.10509.1 /TIER=FL /STK=2 /UG=Rn.10509 /LL=29703 /DEF=Rattus norvegicus kinase interacting with leukemia-associated gene (stathmin) (Kis), mRNA. /PROD=kinase interacting with leukemia-associated gene(stathmin) /FL=gb:U70372.2 gb:NM_017293.1 NM_017293 U2AF homology motif (UHM) kinase 1 Uhmk1 246332 NM_017293 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0018105 // peptidyl-serine phosphorylation // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from electronic annotation /// 0031175 // neuron projection development // not recorded /// 0045948 // positive regulation of translational initiation // inferred from electronic annotation /// 0045948 // positive regulation of translational initiation // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // not recorded /// 0046825 // regulation of protein export from nucleus // inferred from electronic annotation /// 0046825 // regulation of protein export from nucleus // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0032839 // dendrite cytoplasm // inferred from electronic annotation /// 0032839 // dendrite cytoplasm // not recorded /// 0071598 // neuronal RNA granule // inferred from electronic annotation /// 0071598 // neuronal RNA granule // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred by curator /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0043021 // ribonucleoprotein binding // inferred from electronic annotation /// 0043021 // ribonucleoprotein binding // not recorded 1387407_at NM_133402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133402.1 /DB_XREF=gi:19173761 /GEN=Nap1l3 /FEA=FLmRNA /CNT=7 /TID=Rn.27765.1 /TIER=FL /STK=2 /UG=Rn.27765 /DEF=Rattus norvegicus nucleosome assembly protein 1-like 3 (Nap1l3), mRNA. /PROD=nucleosome assembly protein 1-like 3 /FL=gb:AB067678.1 gb:NM_133402.1 NM_133402 nucleosome assembly protein 1-like 3 Nap1l3 170914 NM_133402 0006334 // nucleosome assembly // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1387408_at NM_134457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134457.1 /DB_XREF=gi:19745173 /GEN=Siah2 /FEA=FLmRNA /CNT=7 /TID=Rn.29192.1 /TIER=FL /STK=2 /UG=Rn.29192 /DEF=Rattus norvegicus seven in absentia 2 (Siah2), mRNA. /PROD=seven in absentia 2 /FL=gb:NM_134457.1 gb:AB067815.1 NM_134457 seven in absentia 2 Siah2 140593 NM_134457 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0031396 // regulation of protein ubiquitination // inferred from direct assay /// 0044257 // cellular protein catabolic process // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay 0004842 // ubiquitin-protein ligase activity // non-traceable author statement /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387409_x_at NM_134336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134336.1 /DB_XREF=gi:19705444 /GEN=Nlgn3 /FEA=FLmRNA /CNT=6 /TID=Rn.10263.1 /TIER=FL /STK=2 /UG=Rn.10263 /LL=171297 /DEF=Rattus norvegicus neuroligin 3 (Nlgn3), mRNA. /PROD=neuroligin 3 /FL=gb:NM_134336.1 gb:U41663.1 NM_134336 neuroligin 3 Nlgn3 171297 NM_134336 0002087 // regulation of respiratory gaseous exchange by neurological system process // inferred from electronic annotation /// 0002087 // regulation of respiratory gaseous exchange by neurological system process // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0008542 // visual learning // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0035176 // social behavior // inferred from electronic annotation /// 0035176 // social behavior // not recorded /// 0050804 // regulation of synaptic transmission // inferred from electronic annotation /// 0050804 // regulation of synaptic transmission // not recorded /// 0050808 // synapse organization // inferred from direct assay /// 0050808 // synapse organization // not recorded /// 0050808 // synapse organization // inferred from electronic annotation /// 0060080 // regulation of inhibitory postsynaptic membrane potential // inferred from electronic annotation /// 0060080 // regulation of inhibitory postsynaptic membrane potential // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387410_at U72345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U72345.1 /DB_XREF=gi:2317856 /GEN=nurr1 /FEA=FLmRNA /CNT=6 /TID=Rn.9839.1 /TIER=FL /STK=2 /UG=Rn.9839 /LL=54278 /DEF=Rattus norvegicus orphan nuclear hormone receptor (nurr1) mRNA, complete cds. /PROD=orphan nuclear hormone receptor /FL=gb:NM_019328.1 gb:U01146.1 gb:U72345.1 gb:L08595.1 U72345 nuclear receptor subfamily 4, group A, member 2 Nr4a2 54278 NM_019328 0001666 // response to hypoxia // not recorded /// 0001764 // neuron migration // not recorded /// 0001975 // response to amphetamine // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006950 // response to stress // not recorded /// 0007399 // nervous system development // not recorded /// 0008344 // adult locomotory behavior // not recorded /// 0009791 // post-embryonic development // not recorded /// 0010035 // response to inorganic substance // inferred from direct assay /// 0010467 // gene expression // not recorded /// 0016265 // death // not recorded /// 0017085 // response to insecticide // inferred from direct assay /// 0021952 // central nervous system projection neuron axonogenesis // not recorded /// 0021953 // central nervous system neuron differentiation // not recorded /// 0030182 // neuron differentiation // not recorded /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0031668 // cellular response to extracellular stimulus // not recorded /// 0042053 // regulation of dopamine metabolic process // not recorded /// 0042416 // dopamine biosynthetic process // not recorded /// 0042417 // dopamine metabolic process // not recorded /// 0042551 // neuron maturation // not recorded /// 0043085 // positive regulation of catalytic activity // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043576 // regulation of respiratory gaseous exchange // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // traceable author statement /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1387411_at NM_020085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020085.1 /DB_XREF=gi:9910539 /GEN=Rptpk /FEA=FLmRNA /CNT=6 /TID=Rn.53938.1 /TIER=FL /STK=2 /UG=Rn.53938 /LL=56767 /DEF=Rattus norvegicus receptor-like protein tyrosine phosphatase kappa extracellular region (RPTPK) (Rptpk), mRNA. /PROD=receptor-like protein tyrosine phosphatase kappaextracellular region (RPTPK) /FL=gb:NM_020085.1 gb:AF142480.1 NM_020085 protein tyrosine phosphatase, receptor type, K, extracellular region Ptprk 360302 NM_001029902 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from direct assay /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from mutant phenotype 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // traceable author statement /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1387412_at NM_053926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053926.1 /DB_XREF=gi:16758973 /GEN=Pip5k2a /FEA=FLmRNA /CNT=6 /TID=Rn.24177.1 /TIER=FL /STK=2 /UG=Rn.24177 /LL=116723 /DEF=Rattus norvegicus phosphatidylinositol-4-phosphate 5-kinase, type II, alpha (Pip5k2a), mRNA. /PROD=phosphatidylinositol-4-phosphate 5-kinase, typeII, alpha /FL=gb:NM_053926.1 gb:AB032899.1 NM_053926 phosphatidylinositol-5-phosphate 4-kinase, type II, alpha Pip4k2a 116723 NM_053926 0046488 // phosphatidylinositol metabolic process // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016307 // phosphatidylinositol phosphate kinase activity // inferred from electronic annotation /// 0016309 // 1-phosphatidylinositol-5-phosphate 4-kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387413_at NM_053734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053734.1 /DB_XREF=gi:16758551 /GEN=Ncf1 /FEA=FLmRNA /CNT=6 /TID=Rn.38575.1 /TIER=FL /STK=2 /UG=Rn.38575 /LL=114553 /DEF=Rattus norvegicus neutrophil cytosolic factor 1 (Ncf1), mRNA. /PROD=neutrophil cytosolic factor 1 /FL=gb:NM_053734.1 gb:AY029167.1 NM_053734 neutrophil cytosolic factor 1 Ncf1 114553 NM_053734 0001878 // response to yeast // not recorded /// 0001878 // response to yeast // inferred from electronic annotation /// 0001909 // leukocyte mediated cytotoxicity // not recorded /// 0001909 // leukocyte mediated cytotoxicity // inferred from electronic annotation /// 0002679 // respiratory burst involved in defense response // not recorded /// 0002679 // respiratory burst involved in defense response // inferred from electronic annotation /// 0006691 // leukotriene metabolic process // not recorded /// 0006691 // leukotriene metabolic process // inferred from electronic annotation /// 0006915 // apoptosis // inferred from mutant phenotype /// 0006954 // inflammatory response // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006968 // cellular defense response // not recorded /// 0006968 // cellular defense response // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0009617 // response to bacterium // not recorded /// 0009617 // response to bacterium // inferred from electronic annotation /// 0042554 // superoxide anion generation // not recorded /// 0042554 // superoxide anion generation // inferred from electronic annotation /// 0042742 // defense response to bacterium // not recorded /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0045730 // respiratory burst // inferred from mutant phenotype /// 0045730 // respiratory burst // not recorded /// 0045730 // respiratory burst // inferred from electronic annotation /// 0045986 // negative regulation of smooth muscle contraction // not recorded /// 0045986 // negative regulation of smooth muscle contraction // inferred from electronic annotation /// 0050665 // hydrogen peroxide biosynthetic process // not recorded /// 0050665 // hydrogen peroxide biosynthetic process // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // not recorded /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0050832 // defense response to fungus // not recorded /// 0050832 // defense response to fungus // inferred from electronic annotation /// 0070946 // neutrophil mediated killing of gram-positive bacterium // not recorded /// 0070946 // neutrophil mediated killing of gram-positive bacterium // inferred from electronic annotation /// 0070947 // neutrophil mediated killing of fungus // not recorded /// 0070947 // neutrophil mediated killing of fungus // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043020 // NADPH oxidase complex // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016175 // superoxide-generating NADPH oxidase activity // inferred from direct assay /// 0016175 // superoxide-generating NADPH oxidase activity // not recorded /// 0016175 // superoxide-generating NADPH oxidase activity // traceable author statement /// 0016175 // superoxide-generating NADPH oxidase activity // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1387414_at NM_024141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024141.1 /DB_XREF=gi:13162321 /GEN=Thox2 /FEA=FLmRNA /CNT=5 /TID=Rn.55542.1 /TIER=FL /STK=2 /UG=Rn.55542 /LL=79107 /DEF=Rattus norvegicus NADHNADPH thyroid oxidase THOX2 (Thox2), mRNA. /PROD=NADHNADPH thyroid oxidase THOX2 /FL=gb:AF237962.1 gb:NM_024141.1 NM_024141 dual oxidase 2 Duox2 79107 NM_024141 0006590 // thyroid hormone generation // traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0009566 // fertilization // not recorded /// 0009615 // response to virus // not recorded /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from sequence or structural similarity /// 0030282 // bone mineralization // not recorded /// 0030878 // thyroid gland development // not recorded /// 0035264 // multicellular organism growth // not recorded /// 0042335 // cuticle development // inferred from sequence or structural similarity /// 0042403 // thyroid hormone metabolic process // not recorded /// 0042445 // hormone metabolic process // not recorded /// 0042446 // hormone biosynthetic process // inferred from electronic annotation /// 0042744 // hydrogen peroxide catabolic process // inferred from electronic annotation /// 0048839 // inner ear development // not recorded /// 0048855 // adenohypophysis morphogenesis // not recorded /// 0051591 // response to cAMP // not recorded /// 0051591 // response to cAMP // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation 0004601 // peroxidase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016174 // NAD(P)H oxidase activity // inferred from electronic annotation /// 0016174 // NAD(P)H oxidase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1387415_a_at AF118889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF118889.1 /DB_XREF=gi:4689228 /FEA=FLmRNA /CNT=1 /TID=Rn.48690.2 /TIER=FL /STK=1 /UG=Rn.48690 /LL=81022 /UG_GENE=LOC81022 /DEF=Rattus norvegicus b-tomosyn isoform mRNA, complete cds. /PROD=b-tomosyn isoform /FL=gb:AF118889.1 AF118889 syntaxin binding protein 5 (tomosyn) Stxbp5 81022 NM_030843 /// NM_178345 /// NM_178346 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0006887 // exocytosis // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from electronic annotation /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017075 // syntaxin-1 binding // inferred from direct assay /// 0017075 // syntaxin-1 binding // not recorded /// 0017075 // syntaxin-1 binding // inferred from electronic annotation /// 0019905 // syntaxin binding // not recorded /// 0019905 // syntaxin binding // inferred from electronic annotation 1387416_at NM_031788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031788.1 /DB_XREF=gi:13929115 /GEN=Rest /FEA=FLmRNA /CNT=5 /TID=Rn.10879.1 /TIER=FL /STK=2 /UG=Rn.10879 /LL=83618 /DEF=Rattus norvegicus zinc finger transcription factor REST protein (Rest), mRNA. /PROD=zinc finger transcription factor REST protein /FL=gb:AF037199.1 gb:NM_031788.1 NM_031788 RE1-silencing transcription factor Rest 83618 NM_031788 0000122 // negative regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0006350 // transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation 0000785 // chromatin // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0043234 // protein complex // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0032403 // protein complex binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1387417_a_at NM_134456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134456.1 /DB_XREF=gi:19745171 /GEN=Sh2bpsm1 /FEA=FLmRNA /CNT=5 /TID=Rn.11069.1 /TIER=FL /STK=2 /UG=Rn.11069 /LL=89817 /DEF=Rattus norvegicus SH2-B PH domain containing signaling mediator 1 (Sh2bpsm1), mRNA. /PROD=SH2-B PH domain containing signaling mediator 1 /FL=gb:AF047577.1 gb:NM_134456.1 NM_134456 SH2-B PH domain containing signaling mediator 1 Sh2bpsm1 89817 NM_001048180 /// NM_134456 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation 1387418_a_at AB021970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB021970.1 /DB_XREF=gi:4630791 /FEA=FLmRNA /CNT=1 /TID=Rn.14577.2 /TIER=FL /STK=1 /UG=Rn.14577 /LL=83511 /UG_GENE=Slc6a2 /DEF=Rattus norvegicus mRNA for norepinephrine transporter a (rNETa), complete cds. /PROD=norepinephrine transporter a (rNETa) /FL=gb:AB021970.1 AB021970 solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2 Slc6a2 83511 NM_031343 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // not recorded /// 0015844 // monoamine transport // not recorded /// 0015874 // norepinephrine transport // inferred from direct assay /// 0048265 // response to pain // inferred from electronic annotation /// 0048265 // response to pain // not recorded 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from mutant phenotype 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0005333 // norepinephrine transmembrane transporter activity // inferred from direct assay /// 0008504 // monoamine transmembrane transporter activity // not recorded /// 0015293 // symporter activity // inferred from electronic annotation 1387419_at NM_012832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012832.1 /DB_XREF=gi:6978654 /GEN=Chrna7 /FEA=FLmRNA /CNT=5 /TID=Rn.9698.1 /TIER=FL /STK=2 /UG=Rn.9698 /LL=25302 /DEF=Rattus norvegicus C holinergic receptor, nicotinic, alpha polypeptide 7 (neuronal nicotinic acetycholine receptor alpha 7) (bungarotoxin alpha) (Chrna7), mRNA. /PROD=C holinergic receptor, nicotinic, alphapolypeptide 7 (neuronal nicotinic acetycholine receptoralpha 7) (bungarotoxin alpha) /FL=gb:L31619.1 gb:NM_012832.1 NM_012832 cholinergic receptor, nicotinic, alpha 7 Chrna7 25302 NM_012832 0000187 // activation of MAPK activity // not recorded /// 0001666 // response to hypoxia // not recorded /// 0001988 // positive regulation of heart rate involved in baroreceptor response to decreased systemic arterial blood pressure // inferred from electronic annotation /// 0001988 // positive regulation of heart rate involved in baroreceptor response to decreased systemic arterial blood pressure // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006811 // ion transport // not recorded /// 0006812 // cation transport // not recorded /// 0006816 // calcium ion transport // inferred from mutant phenotype /// 0006816 // calcium ion transport // not recorded /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006897 // endocytosis // inferred from electronic annotation /// 0006897 // endocytosis // not recorded /// 0007165 // signal transduction // not recorded /// 0007271 // synaptic transmission, cholinergic // inferred from mutant phenotype /// 0007271 // synaptic transmission, cholinergic // not recorded /// 0007271 // synaptic transmission, cholinergic // inferred from electronic annotation /// 0007613 // memory // inferred from electronic annotation /// 0007613 // memory // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008306 // associative learning // inferred from electronic annotation /// 0008306 // associative learning // not recorded /// 0014061 // regulation of norepinephrine secretion // inferred from electronic annotation /// 0014061 // regulation of norepinephrine secretion // not recorded /// 0019228 // regulation of action potential in neuron // inferred from direct assay /// 0019228 // regulation of action potential in neuron // inferred from mutant phenotype /// 0030317 // sperm motility // inferred from electronic annotation /// 0030317 // sperm motility // not recorded /// 0032094 // response to food // inferred from electronic annotation /// 0032094 // response to food // not recorded /// 0032225 // regulation of synaptic transmission, dopaminergic // inferred from electronic annotation /// 0032225 // regulation of synaptic transmission, dopaminergic // not recorded /// 0032691 // negative regulation of interleukin-1 beta production // inferred from electronic annotation /// 0032691 // negative regulation of interleukin-1 beta production // not recorded /// 0032715 // negative regulation of interleukin-6 production // inferred from electronic annotation /// 0032715 // negative regulation of interleukin-6 production // not recorded /// 0032720 // negative regulation of tumor necrosis factor production // inferred from electronic annotation /// 0032720 // negative regulation of tumor necrosis factor production // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0035094 // response to nicotine // not recorded /// 0035094 // response to nicotine // inferred from electronic annotation /// 0035095 // behavioral response to nicotine // inferred from electronic annotation /// 0035095 // behavioral response to nicotine // not recorded /// 0042110 // T cell activation // inferred from electronic annotation /// 0042110 // T cell activation // not recorded /// 0042113 // B cell activation // inferred from electronic annotation /// 0042113 // B cell activation // not recorded /// 0042221 // response to chemical stimulus // not recorded /// 0042391 // regulation of membrane potential // inferred from direct assay /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042391 // regulation of membrane potential // inferred from mutant phenotype /// 0042391 // regulation of membrane potential // not recorded /// 0042416 // dopamine biosynthetic process // inferred from expression pattern /// 0042698 // ovulation cycle // inferred from electronic annotation /// 0042698 // ovulation cycle // not recorded /// 0045471 // response to ethanol // not recorded /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0048149 // behavioral response to ethanol // inferred from electronic annotation /// 0048149 // behavioral response to ethanol // not recorded /// 0050727 // regulation of inflammatory response // not recorded /// 0050727 // regulation of inflammatory response // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // not recorded /// 0050890 // cognition // not recorded /// 0060112 // generation of ovulation cycle rhythm // inferred from electronic annotation /// 0060112 // generation of ovulation cycle rhythm // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from direct assay /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // not recorded /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0032279 // asymmetric synapse // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0001540 // beta-amyloid binding // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from direct assay /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from mutant phenotype /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // not recorded /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0008179 // adenylate cyclase binding // inferred from physical interaction /// 0015464 // acetylcholine receptor activity // not recorded /// 0015643 // toxin binding // not recorded /// 0017081 // chloride channel regulator activity // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0042166 // acetylcholine binding // inferred from direct assay /// 0042166 // acetylcholine binding // inferred from mutant phenotype /// 0042166 // acetylcholine binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1387420_at NM_031818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031818.1 /DB_XREF=gi:13929165 /GEN=Clic4 /FEA=FLmRNA /CNT=5 /TID=Rn.21562.1 /TIER=FL /STK=2 /UG=Rn.21562 /LL=83718 /DEF=Rattus norvegicus intracellular chloride ion channel protein p64H1 (Clic4), mRNA. /PROD=intracellular chloride ion channel proteinp64H1 /FL=gb:NM_031818.1 gb:AF104119.1 NM_031818 chloride intracellular channel 4 Clic4 83718 NM_031818 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // traceable author statement /// 0006821 // chloride transport // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // not recorded /// 0030336 // negative regulation of cell migration // not recorded /// 0030336 // negative regulation of cell migration // inferred from sequence or structural similarity /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0071277 // cellular response to calcium ion // inferred from electronic annotation /// 0071277 // cellular response to calcium ion // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005625 // soluble fraction // not recorded /// 0005625 // soluble fraction // inferred from sequence or structural similarity /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005902 // microvillus // not recorded /// 0005902 // microvillus // inferred from sequence or structural similarity /// 0005902 // microvillus // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0009986 // cell surface // not recorded /// 0015630 // microtubule cytoskeleton // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded /// 0030496 // midbody // not recorded /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031982 // vesicle // traceable author statement /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005247 // voltage-gated chloride channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from direct assay /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1387421_at NM_032462 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032462.1 /DB_XREF=gi:14269575 /GEN=Csen-pending /FEA=FLmRNA /CNT=5 /TID=Rn.74239.1 /TIER=FL /STK=2 /UG=Rn.74239 /LL=65199 /DEF=Rattus norvegicus calsenilin, presenilin-binding protein, EF hand transcription factor (Csen-pending), mRNA. /PROD=calsenilin, presenilin-binding protein, EF handtranscription factor /FL=gb:NM_032462.1 gb:AF297118.1 gb:AB043892.1 NM_032462 Kv channel interacting protein 3, calsenilin Kcnip3 65199 NM_032462 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from mutant phenotype /// 0006915 // apoptosis // inferred from electronic annotation /// 0007610 // behavior // not recorded /// 0019233 // sensory perception of pain // not recorded /// 0043523 // regulation of neuron apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048265 // response to pain // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // not recorded /// 0015459 // potassium channel regulator activity // inferred from direct assay /// 0016566 // specific transcriptional repressor activity // not recorded /// 0048306 // calcium-dependent protein binding // not recorded 1387422_at NM_053373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053373.1 /DB_XREF=gi:16758103 /GEN=Pglyrp /FEA=FLmRNA /CNT=5 /TID=Rn.2834.1 /TIER=FL /STK=2 /UG=Rn.2834 /LL=84387 /DEF=Rattus norvegicus peptidoglycan recognition protein (Pglyrp), mRNA. /PROD=peptidoglycan recognition protein /FL=gb:AF154114.1 gb:NM_053373.1 NM_053373 peptidoglycan recognition protein 1 Pglyrp1 84387 NM_053373 0006955 // immune response // traceable author statement /// 0009253 // peptidoglycan catabolic process // inferred from electronic annotation /// 0016045 // detection of bacterium // inferred from electronic annotation /// 0016045 // detection of bacterium // not recorded /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation /// 0045187 // regulation of circadian sleep/wake cycle, sleep // inferred from expression pattern /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // not recorded 0005576 // extracellular region // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008745 // N-acetylmuramoyl-L-alanine amidase activity // inferred from electronic annotation /// 0016019 // peptidoglycan receptor activity // not recorded /// 0016019 // peptidoglycan receptor activity // traceable author statement /// 0016019 // peptidoglycan receptor activity // inferred from electronic annotation /// 0042834 // peptidoglycan binding // not recorded /// 0042834 // peptidoglycan binding // inferred from sequence or structural similarity /// 0042834 // peptidoglycan binding // inferred from electronic annotation 1387423_at NM_012978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012978.1 /DB_XREF=gi:6981159 /GEN=Lhcgr /FEA=FLmRNA /CNT=15 /TID=Rn.11216.1 /TIER=ConsEnd /STK=0 /UG=Rn.11216 /LL=25477 /DEF=Rattus norvegicus Luteinizing hormonechoriogonadotropin receptor (Lhcgr), mRNA. /PROD=luteinizing hormonechoriogonadotropin receptor /FL=gb:M26199.1 gb:NM_012978.1 NM_012978 luteinizing hormone/choriogonadotropin receptor Lhcgr 25477 NM_012978 0006622 // protein targeting to lysosome // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from direct assay /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from mutant phenotype /// 0007190 // activation of adenylate cyclase activity // inferred from direct assay /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from direct assay /// 0009755 // hormone-mediated signaling pathway // inferred from direct assay /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0042700 // luteinizing hormone signaling pathway // inferred from direct assay /// 0046886 // positive regulation of hormone biosynthetic process // inferred from direct assay /// 0050482 // arachidonic acid secretion // inferred from direct assay /// 0050810 // regulation of steroid biosynthetic process // inferred from expression pattern /// 0050850 // positive regulation of calcium-mediated signaling // inferred from direct assay /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031233 // intrinsic to external side of plasma membrane // inferred from direct assay /// 0043235 // receptor complex // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004964 // luteinizing hormone receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0008528 // peptide receptor activity, G-protein coupled // inferred from direct assay /// 0016500 // protein-hormone receptor activity // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred from direct assay /// 0017046 // peptide hormone binding // inferred from mutant phenotype /// 0017046 // peptide hormone binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0051117 // ATPase binding // inferred from physical interaction 1387424_at NM_012884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012884.1 /DB_XREF=gi:6981631 /GEN=Tax /FEA=FLmRNA /CNT=8 /TID=Rn.9945.1 /TIER=FL /STK=2 /UG=Rn.9945 /LL=25356 /DEF=Rattus norvegicus Transient axonal glycoprotein 1 (TAG-1) (Tax), mRNA. /PROD=transient axonal glycoprotein 1 (TAG-1) /FL=gb:M31725.1 gb:NM_012884.1 NM_012884 contactin 2 (axonal) Cntn2 25356 NM_012884 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from direct assay /// 0007409 // axonogenesis // inferred from direct assay /// 0034613 // cellular protein localization // inferred from electronic annotation /// 0034613 // cellular protein localization // not recorded /// 0045163 // clustering of voltage-gated potassium channels // inferred from electronic annotation /// 0045163 // clustering of voltage-gated potassium channels // not recorded /// 0071206 // establishment of protein localization to juxtaparanode region of axon // inferred from electronic annotation /// 0071206 // establishment of protein localization to juxtaparanode region of axon // not recorded 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0033268 // node of Ranvier // inferred from electronic annotation /// 0033268 // node of Ranvier // not recorded /// 0043209 // myelin sheath // inferred from electronic annotation /// 0043209 // myelin sheath // not recorded /// 0044224 // juxtaparanode region of axon // inferred from electronic annotation /// 0044224 // juxtaparanode region of axon // not recorded /// 0044456 // synapse part // inferred from direct assay 1387425_at NM_031779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031779.1 /DB_XREF=gi:13929099 /GEN=Apba1 /FEA=FLmRNA /CNT=7 /TID=Rn.54819.1 /TIER=FL /STK=2 /UG=Rn.54819 /LL=83589 /DEF=Rattus norvegicus amyloid beta (A4) precursor protein-binding, family A, APBA1: amyloid beta (A4) precursor protein-binding, family A, member 1 (X11) (Apba1), mRNA. /PROD=amyloid beta (A4) precursor protein-binding,family A, APBA1: amyloid beta (A4) precursorprotein-binding, family A, member 1 (X11) /FL=gb:NM_031779.1 gb:AF029105.1 NM_031779 amyloid beta (A4) precursor protein-binding, family A, member 1 Apba1 83589 NM_031779 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0014047 // glutamate secretion // inferred from electronic annotation /// 0014047 // glutamate secretion // not recorded /// 0014051 // gamma-aminobutyric acid secretion // inferred from electronic annotation /// 0014051 // gamma-aminobutyric acid secretion // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016079 // synaptic vesicle exocytosis // traceable author statement /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded 0005886 // plasma membrane // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from direct assay /// 0030165 // PDZ domain binding // inferred from physical interaction 1387426_at NM_133614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133614.1 /DB_XREF=gi:19424329 /GEN=Slc25a21 /FEA=FLmRNA /CNT=7 /TID=Rn.55497.1 /TIER=FL /STK=2 /UG=Rn.55497 /LL=171151 /DEF=Rattus norvegicus solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21 (Slc25a21), mRNA. /PROD=solute carrier family 25 (mitochondrialoxodicarboxylate carrier), member 21 /FL=gb:NM_133614.1 NM_133614 solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21 Slc25a21 171151 NM_133614 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0015139 // alpha-ketoglutarate transmembrane transporter activity // not recorded 1387427_at NM_022246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022246.1 /DB_XREF=gi:11560047 /GEN=Rad50 /FEA=FLmRNA /CNT=6 /TID=Rn.51136.1 /TIER=FL /STK=2 /UG=Rn.51136 /LL=64012 /DEF=Rattus norvegicus RAD50 homolog (S. cerevisiae) (Rad50), mRNA. /PROD=RAD50 homolog (S. cerevisiae) /FL=gb:NM_022246.1 gb:AF218576.1 NM_022246 RAD50 homolog (S. cerevisiae) Rad50 64012 NM_022246 0000019 // regulation of mitotic recombination // not recorded /// 0000019 // regulation of mitotic recombination // inferred from sequence or structural similarity /// 0000075 // cell cycle checkpoint // traceable author statement /// 0000723 // telomere maintenance // traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006281 // DNA repair // not recorded /// 0006281 // DNA repair // inferred from sequence or structural similarity /// 0006302 // double-strand break repair // not recorded /// 0006302 // double-strand break repair // inferred from sequence or structural similarity /// 0006302 // double-strand break repair // traceable author statement /// 0006310 // DNA recombination // not recorded /// 0006310 // DNA recombination // inferred from sequence or structural similarity /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007004 // telomere maintenance via telomerase // not recorded /// 0007004 // telomere maintenance via telomerase // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from electronic annotation /// 0007126 // meiosis // inferred from electronic annotation /// 0007131 // reciprocal meiotic recombination // traceable author statement /// 0031954 // positive regulation of protein autophosphorylation // not recorded /// 0032508 // DNA duplex unwinding // not recorded /// 0033674 // positive regulation of kinase activity // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0000784 // nuclear chromosome, telomeric region // not recorded /// 0000790 // nuclear chromatin // inferred from direct assay /// 0000794 // condensed nuclear chromosome // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from direct assay /// 0016234 // inclusion body // inferred from direct assay /// 0030870 // Mre11 complex // inferred from electronic annotation /// 0030870 // Mre11 complex // not recorded /// 0030870 // Mre11 complex // inferred from sequence or structural similarity /// 0030870 // Mre11 complex // traceable author statement /// 0045120 // pronucleus // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000014 // single-stranded DNA specific endodeoxyribonuclease activity // not recorded /// 0000014 // single-stranded DNA specific endodeoxyribonuclease activity // inferred from sequence or structural similarity /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0004003 // ATP-dependent DNA helicase activity // not recorded /// 0004518 // nuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008408 // 3'-5' exonuclease activity // not recorded /// 0008408 // 3'-5' exonuclease activity // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030674 // protein binding, bridging // not recorded /// 0030674 // protein binding, bridging // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1387428_at NM_017346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017346.1 /DB_XREF=gi:8393059 /GEN=Ccb /FEA=FLmRNA /CNT=6 /TID=Rn.9417.1 /TIER=FL /STK=2 /UG=Rn.9417 /LL=50688 /DEF=Rattus norvegicus calcium channel beta (Ccb), mRNA. /PROD=calcium channel beta /FL=gb:NM_017346.1 NM_017346 calcium channel, voltage-dependent, beta 1 subunit Cacnb1 50688 NM_017346 0006612 // protein targeting to membrane // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0070588 // calcium ion transmembrane transport // not recorded 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // inferred from direct assay /// 0005891 // voltage-gated calcium channel complex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // not recorded /// 0030315 // T-tubule // not recorded /// 0042383 // sarcolemma // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from direct assay /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // not recorded /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008331 // high voltage-gated calcium channel activity // not recorded 1387429_at NM_012776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012776.1 /DB_XREF=gi:6978464 /GEN=Adrbk1 /FEA=FLmRNA /CNT=6 /TID=Rn.13010.1 /TIER=FL /STK=2 /UG=Rn.13010 /LL=25238 /DEF=Rattus norvegicus adrenergic receptor kinase, beta 1 (Adrbk1), mRNA. /PROD=adrenergic receptor kinase, beta 1 /FL=gb:NM_012776.1 gb:M87854.1 NM_012776 adrenergic, beta, receptor kinase 1 Adrbk1 25238 NM_012776 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002026 // regulation of the force of heart contraction // not recorded /// 0002029 // desensitization of G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0002029 // desensitization of G-protein coupled receptor protein signaling pathway // not recorded /// 0002029 // desensitization of G-protein coupled receptor protein signaling pathway // traceable author statement /// 0002029 // desensitization of G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0003108 // negative regulation of the force of heart contraction by chemical signal // inferred from electronic annotation /// 0003108 // negative regulation of the force of heart contraction by chemical signal // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007217 // tachykinin receptor signaling pathway // inferred from electronic annotation /// 0007217 // tachykinin receptor signaling pathway // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007568 // aging // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0016310 // phosphorylation // not recorded /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0018107 // peptidyl-threonine phosphorylation // inferred from electronic annotation /// 0018107 // peptidyl-threonine phosphorylation // not recorded /// 0033605 // positive regulation of catecholamine secretion // inferred from direct assay /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0042699 // follicle-stimulating hormone signaling pathway // inferred from direct assay /// 0045744 // negative regulation of G-protein coupled receptor protein signaling pathway // non-traceable author statement /// 0045988 // negative regulation of striated muscle contraction // inferred from electronic annotation /// 0045988 // negative regulation of striated muscle contraction // not recorded /// 0060048 // cardiac muscle contraction // inferred from electronic annotation /// 0060048 // cardiac muscle contraction // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004703 // G-protein coupled receptor kinase activity // inferred from electronic annotation /// 0004703 // G-protein coupled receptor kinase activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0031698 // beta-2 adrenergic receptor binding // traceable author statement /// 0031755 // Edg-2 lysophosphatidic acid receptor binding // inferred from electronic annotation /// 0031755 // Edg-2 lysophosphatidic acid receptor binding // not recorded /// 0047696 // beta-adrenergic receptor kinase activity // inferred from electronic annotation 1387430_at NM_031694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031694.1 /DB_XREF=gi:13928965 /GEN=Hsf2 /FEA=FLmRNA /CNT=6 /TID=Rn.48722.1 /TIER=FL /STK=2 /UG=Rn.48722 /LL=64441 /DEF=Rattus norvegicus heat shock factor 2 (Hsf2), mRNA. /PROD=heat shock factor 2 /FL=gb:AF172640.1 gb:NM_031694.1 NM_031694 heat shock transcription factor 2 Hsf2 64441 NM_031694 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0045449 // regulation of transcription // non-traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1387431_at NM_134416 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134416.1 /DB_XREF=gi:19705552 /GEN=Rhk1 /FEA=FLmRNA /CNT=5 /TID=Rn.35233.1 /TIER=FL /STK=2 /UG=Rn.35233 /LL=171457 /DEF=Rattus norvegicus KARP-1 binding protein 1 (Rhk1), mRNA. /PROD=KARP-1 binding protein 1 /FL=gb:AB038495.1 gb:NM_134416.1 NM_134416 KARP-1 binding protein 1 Kab 171457 XM_002724894 /// XM_002728034 1387432_at NM_031346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031346.1 /DB_XREF=gi:13786185 /GEN=Rod1 /FEA=FLmRNA /CNT=5 /TID=Rn.26667.1 /TIER=FL /STK=2 /UG=Rn.26667 /LL=83515 /DEF=Rattus norvegicus regulator of differentiation (in S. pombe) 1 (Rod1), mRNA. /PROD=regulator of differentiation (in S. pombe) 1 /FL=gb:NM_031346.1 gb:AB023966.1 NM_031346 ROD1 regulator of differentiation 1 (S. pombe) Rod1 83515 NM_031346 0006397 // mRNA processing // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // non-traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation 1387433_a_at NM_053500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053500.1 /DB_XREF=gi:16758259 /GEN=Ucp4 /FEA=FLmRNA /CNT=5 /TID=Rn.64630.1 /TIER=FL /STK=2 /UG=Rn.64630 /LL=85262 /DEF=Rattus norvegicus uncoupling protein UCP-4 (Ucp4), mRNA. /PROD=uncoupling protein UCP-4 /FL=gb:NM_053500.1 NM_053500 solute carrier family 25, member 27 Slc25a27 85262 NM_053500 0006810 // transport // inferred from electronic annotation /// 0046902 // regulation of mitochondrial membrane permeability // non-traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1387434_at NM_022270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022270.1 /DB_XREF=gi:11560088 /GEN=Octn1 /FEA=FLmRNA /CNT=5 /TID=Rn.54434.1 /TIER=FL /STK=2 /UG=Rn.54434 /LL=64037 /DEF=Rattus norvegicus organic cation transporter OCTN1 (Octn1), mRNA. /PROD=organic cation transporter OCTN1 /FL=gb:NM_022270.1 gb:AF169831.1 NM_022270 solute carrier family 22 (organic cation transporter), member 4 Slc22a4 64037 NM_022270 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0015697 // quaternary ammonium group transport // inferred from direct assay /// 0015697 // quaternary ammonium group transport // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015075 // ion transmembrane transporter activity // inferred from electronic annotation /// 0015101 // organic cation transmembrane transporter activity // inferred from direct assay /// 0015293 // symporter activity // inferred from electronic annotation /// 0015651 // quaternary ammonium group transmembrane transporter activity // inferred from direct assay /// 0015651 // quaternary ammonium group transmembrane transporter activity // inferred from mutant phenotype 1387435_at NM_013029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013029.1 /DB_XREF=gi:6981539 /GEN=Siat8c /FEA=FLmRNA /CNT=5 /TID=Rn.10969.1 /TIER=FL /STK=2 /UG=Rn.10969 /LL=25547 /DEF=Rattus norvegicus Sialyltransferase 8 (GT3 alpha 2,8-sialyltransferase) C (Siat8c), mRNA. /PROD=sialyltransferase 8 (GT3 alpha2,8-sialyltransferase) C /FL=gb:NM_013029.1 gb:U55938.1 NM_013029 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 St8sia3 25547 NM_013029 0006486 // protein glycosylation // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation 0003828 // alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity // inferred from electronic annotation /// 0003828 // alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity // not recorded /// 0008373 // sialyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1387436_at NM_022616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022616.1 /DB_XREF=gi:12018295 /GEN=Cdc10 /FEA=FLmRNA /CNT=5 /TID=Rn.48701.1 /TIER=FL /STK=2 /UG=Rn.48701 /LL=64551 /DEF=Rattus norvegicus CDC10 (cell division cycle 10, S.cerevisiae, homolog) (Cdc10), mRNA. /PROD=CDC10 (cell division cycle 10, S.cerevisiae,homolog) /FL=gb:NM_022616.1 gb:AF142759.1 NM_022616 septin 7 Sept7 64551 NM_001113740 /// NM_022616 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0051291 // protein heterooligomerization // not recorded /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0001725 // stress fiber // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0031105 // septin complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1387437_at NM_053511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053511.1 /DB_XREF=gi:16758269 /GEN=Fbxo2 /FEA=FLmRNA /CNT=5 /TID=Rn.31744.1 /TIER=FL /STK=2 /UG=Rn.31744 /LL=85273 /DEF=Rattus norvegicus neural F box protein NFB42 (Fbxo2), mRNA. /PROD=neural F box protein NFB42 /FL=gb:AF098301.1 gb:NM_053511.1 NM_053511 F-box protein 2 Fbxo2 85273 NM_053511 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0006516 // glycoprotein catabolic process // inferred from electronic annotation /// 0006516 // glycoprotein catabolic process // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0016567 // protein ubiquitination // not recorded /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0030433 // ER-associated protein catabolic process // inferred from electronic annotation /// 0030433 // ER-associated protein catabolic process // not recorded /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0031396 // regulation of protein ubiquitination // inferred from electronic annotation /// 0031396 // regulation of protein ubiquitination // not recorded 0005829 // cytosol // not recorded /// 0019005 // SCF ubiquitin ligase complex // not recorded /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043197 // dendritic spine // not recorded 0001540 // beta-amyloid binding // inferred from electronic annotation /// 0001540 // beta-amyloid binding // not recorded /// 0001948 // glycoprotein binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0030246 // carbohydrate binding // not recorded 1387438_at NM_053639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053639.2 /DB_XREF=gi:18777698 /GEN=Ltc4s /FEA=FLmRNA /CNT=5 /TID=Rn.38594.1 /TIER=FL /STK=2 /UG=Rn.38594 /DEF=Rattus norvegicus leukotriene C4 synthase (Ltc4s), mRNA. /PROD=leukotriene C4 synthase /FL=gb:AB048790.2 gb:NM_053639.2 NM_053639 leukotriene C4 synthase Ltc4s 114097 NM_053639 0006691 // leukotriene metabolic process // not recorded /// 0006691 // leukotriene metabolic process // inferred from electronic annotation /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0019370 // leukotriene biosynthetic process // inferred from direct assay /// 0019370 // leukotriene biosynthetic process // traceable author statement /// 0019370 // leukotriene biosynthetic process // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0048678 // response to axon injury // inferred from expression pattern /// 0071222 // cellular response to lipopolysaccharide // inferred from expression pattern /// 0071299 // cellular response to vitamin A // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005640 // nuclear outer membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004464 // leukotriene-C4 synthase activity // inferred from direct assay /// 0004464 // leukotriene-C4 synthase activity // not recorded /// 0004464 // leukotriene-C4 synthase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008047 // enzyme activator activity // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0008289 // lipid binding // not recorded /// 0016829 // lyase activity // inferred from electronic annotation /// 0043295 // glutathione binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1387439_at NM_022955 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022955.1 /DB_XREF=gi:12621133 /GEN=Egfl3 /FEA=FLmRNA /CNT=4 /TID=Rn.30003.1 /TIER=FL /STK=2 /UG=Rn.30003 /LL=65049 /DEF=Rattus norvegicus MEGF6 (Egfl3), mRNA. /PROD=MEGF6 /FL=gb:NM_022955.1 gb:AB011532.1 NM_022955 multiple EGF-like-domains 6 Megf6 65049 NM_022955 0005576 // extracellular region // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1387440_at NM_022863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022863.1 /DB_XREF=gi:12408321 /GEN=Ireb2 /FEA=FLmRNA /CNT=4 /TID=Rn.10132.1 /TIER=FL /STK=2 /UG=Rn.10132 /LL=64831 /DEF=Rattus norvegicus iron-regulatory protein 2 (Ireb2), mRNA. /PROD=iron-regulatory protein 2 /FL=gb:NM_022863.1 gb:U20181.1 NM_022863 iron responsive element binding protein 2 Ireb2 64831 NM_022863 0006417 // regulation of translation // inferred from electronic annotation /// 0006417 // regulation of translation // not recorded /// 0006782 // protoporphyrinogen IX biosynthetic process // inferred from electronic annotation /// 0006782 // protoporphyrinogen IX biosynthetic process // not recorded /// 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0034101 // erythrocyte homeostasis // inferred from electronic annotation /// 0034101 // erythrocyte homeostasis // not recorded /// 0050892 // intestinal absorption // inferred from electronic annotation /// 0050892 // intestinal absorption // not recorded /// 0055072 // iron ion homeostasis // non-traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030350 // iron-responsive element binding // inferred from direct assay /// 0030350 // iron-responsive element binding // not recorded /// 0030350 // iron-responsive element binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 1387441_at NM_033376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_033376.1 /DB_XREF=gi:15431282 /GEN=Kcnk3 /FEA=FLmRNA /CNT=4 /TID=Rn.80679.1 /TIER=FL /STK=2 /UG=Rn.80679 /LL=29553 /DEF=Rattus norvegicus potassium channel, subfamily K, member 3 (Kcnk3), mRNA. /PROD=potassium channel, subfamily K, member 3 /FL=gb:AF031384.1 gb:NM_033376.1 NM_033376 potassium channel, subfamily K, member 3 Kcnk3 29553 NM_033376 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // inferred from mutant phenotype /// 0051481 // reduction of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0071294 // cellular response to zinc ion // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from mutant phenotype /// 0090102 // cochlea development // inferred from expression pattern 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005252 // open rectifier potassium channel activity // inferred from direct assay /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from mutant phenotype /// 0046982 // protein heterodimerization activity // inferred from mutant phenotype 1387442_at NM_019137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019137.1 /DB_XREF=gi:9506564 /GEN=Egr4l1 /FEA=FLmRNA /CNT=4 /TID=Rn.31998.1 /TIER=FL /STK=2 /UG=Rn.31998 /LL=25129 /DEF=Rattus norvegicus Zinc-finger transcription factor NGFI-C (early response gene) (Egr4l1), mRNA. /PROD=zinc-finger transcription factor NGFI-C (earlyresponse gene), member of the GCGGGGGCG (GSG)element-binding protein family, see /FL=gb:NM_019137.1 gb:M65008.1 NM_019137 early growth response 4 Egr4 25129 NM_019137 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1387443_at NM_134413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134413.1 /DB_XREF=gi:19705546 /GEN=Nac-1 /FEA=FLmRNA /CNT=4 /TID=Rn.11171.1 /TIER=FL /STK=2 /UG=Rn.11171 /LL=171454 /DEF=Rattus norvegicus NAC-1 protein (Nac-1), mRNA. /PROD=NAC-1 protein /FL=gb:NM_134413.1 gb:AF015911.1 NM_134413 nucleus accumbens associated 1, BEN and BTB (POZ) domain containing Nacc1 171454 NM_134413 0006350 // transcription // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded /// 0051260 // protein homooligomerization // inferred from sequence or structural similarity /// 0051260 // protein homooligomerization // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016604 // nuclear body // not recorded /// 0016604 // nuclear body // inferred from sequence or structural similarity /// 0016604 // nuclear body // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // not recorded /// 0016566 // specific transcriptional repressor activity // inferred from sequence or structural similarity /// 0016566 // specific transcriptional repressor activity // inferred from electronic annotation 1387444_at NM_133592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133592.1 /DB_XREF=gi:19424293 /GEN=Bem2 /FEA=FLmRNA /CNT=4 /TID=Rn.10285.1 /TIER=FL /STK=2 /UG=Rn.10285 /LL=171125 /DEF=Rattus norvegicus brain-enriched membrane-associated protein tyrosine BEM-2 (Bem2), mRNA. /PROD=brain-enriched membrane-associated proteintyrosine BEM-2 /FL=gb:NM_133592.1 gb:D45413.1 NM_133592 protein tyrosine phosphatase, receptor type, H Ptprh 171125 NM_001191945 /// XM_001071263 /// XM_574357 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1387445_at NM_031573 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031573.1 /DB_XREF=gi:13928775 /GEN=Phkg1 /FEA=FLmRNA /CNT=4 /TID=Rn.10399.1 /TIER=FL /STK=2 /UG=Rn.10399 /LL=29353 /DEF=Rattus norvegicus Phosphorylase kinase, gamma 1 (Phkg1), mRNA. /PROD=Phosphorylase kinase, gamma 1 /FL=gb:NM_031573.1 NM_031573 phosphorylase kinase, gamma 1 Phkg1 29353 NM_031573 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from direct assay /// 0005977 // glycogen metabolic process // traceable author statement /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005978 // glycogen biosynthetic process // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005964 // phosphorylase kinase complex // inferred from direct assay /// 0005964 // phosphorylase kinase complex // traceable author statement /// 0005964 // phosphorylase kinase complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004689 // phosphorylase kinase activity // inferred from direct assay /// 0004689 // phosphorylase kinase activity // traceable author statement /// 0004689 // phosphorylase kinase activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from direct assay 1387446_at NM_022950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022950.1 /DB_XREF=gi:12621123 /GEN=C1galt1 /FEA=FLmRNA /CNT=4 /TID=Rn.37669.1 /TIER=FL /STK=2 /UG=Rn.37669 /LL=65044 /DEF=Rattus norvegicus core1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase (C1galt1) (C1galt1), mRNA. /PROD=core1UDP-galactose:N-acetylgalactosamine-alpha-R beta1,3-galactosyltransferase (C1galt1) /FL=gb:NM_022950.1 gb:AF157963.1 NM_022950 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 C1galt1 65044 NM_022950 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0016263 // glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity // inferred from electronic annotation /// 0016263 // glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387447_at NM_080904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080904.1 /DB_XREF=gi:18266715 /GEN=Arf3 /FEA=FLmRNA /CNT=4 /TID=Rn.9784.1 /TIER=FL /STK=2 /UG=Rn.9784 /LL=140940 /DEF=Rattus norvegicus ADP-ribosylation factor 3 (Arf3), mRNA. /PROD=ADP-ribosylation factor 3 /FL=gb:L12382.1 gb:NM_080904.1 NM_080904 ADP-ribosylation factor 3 Arf3 140940 NM_080904 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1387448_at NM_019368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019368.1 /DB_XREF=gi:9506758 /GEN=Bet1l /FEA=FLmRNA /CNT=4 /TID=Rn.10790.1 /TIER=FL /STK=2 /UG=Rn.10790 /LL=54400 /DEF=Rattus norvegicus blocked early in transport 1 homolog (S.cerevisiae) - like (Bet1l), mRNA. /PROD=Golgi soluble N-ethylmaleimide-sensitive factorattachment protein 15 /FL=gb:NM_019368.1 gb:AF003998.1 NM_019368 blocked early in transport 1 homolog (S. cerevisiae) like Bet1l 54400 NM_019368 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // not recorded 0000139 // Golgi membrane // inferred from direct assay /// 0000139 // Golgi membrane // not recorded /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from direct assay 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005484 // SNAP receptor activity // not recorded 1387449_at NM_012888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012888.1 /DB_XREF=gi:6981679 /GEN=Tshr /FEA=FLmRNA /CNT=5 /TID=Rn.9967.1 /TIER=FL /STK=2 /UG=Rn.9967 /LL=25360 /DEF=Rattus norvegicus Thyroid stimulating hormone receptor (Tshr), mRNA. /PROD=thyroid stimulating hormone receptor /FL=gb:NM_012888.1 gb:M34842.1 NM_012888 thyroid stimulating hormone receptor Tshr 25360 NM_012888 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0008344 // adult locomotory behavior // not recorded /// 0030183 // B cell differentiation // not recorded /// 0040012 // regulation of locomotion // not recorded /// 0040018 // positive regulation of multicellular organism growth // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004996 // thyroid-stimulating hormone receptor activity // inferred from mutant phenotype /// 0004996 // thyroid-stimulating hormone receptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016500 // protein-hormone receptor activity // inferred from electronic annotation 1387450_at NM_012671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012671.1 /DB_XREF=gi:6981645 /GEN=Tgfa /FEA=FLmRNA /CNT=5 /TID=Rn.9952.1 /TIER=FL /STK=2 /UG=Rn.9952 /LL=24827 /DEF=Rattus norvegicus Transforming growth factor, alpha (Tgfa), mRNA. /PROD=transforming growth factor, alpha /FL=gb:M31076.1 gb:NM_012671.1 NM_012671 transforming growth factor alpha Tgfa 24827 NM_012671 0000187 // activation of MAPK activity // not recorded /// 0000187 // activation of MAPK activity // inferred from sequence or structural similarity /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0006916 // anti-apoptosis // inferred from direct assay /// 0007173 // epidermal growth factor receptor signaling pathway // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0042060 // wound healing // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043524 // negative regulation of neuron apoptosis // inferred from mutant phenotype /// 0043526 // neuroprotection // inferred from mutant phenotype /// 0045741 // positive regulation of epidermal growth factor receptor activity // not recorded /// 0045741 // positive regulation of epidermal growth factor receptor activity // inferred from sequence or structural similarity /// 0045840 // positive regulation of mitosis // not recorded /// 0045840 // positive regulation of mitosis // inferred from sequence or structural similarity /// 0048523 // negative regulation of cellular process // inferred from direct assay /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from sequence or structural similarity /// 0051480 // cytosolic calcium ion homeostasis // inferred from mutant phenotype /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001948 // glycoprotein binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // not recorded /// 0004708 // MAP kinase kinase activity // not recorded /// 0004708 // MAP kinase kinase activity // inferred from sequence or structural similarity /// 0005154 // epidermal growth factor receptor binding // inferred from direct assay /// 0005154 // epidermal growth factor receptor binding // not recorded /// 0005154 // epidermal growth factor receptor binding // inferred from sequence or structural similarity /// 0005154 // epidermal growth factor receptor binding // traceable author statement /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // not recorded /// 0008083 // growth factor activity // inferred from sequence or structural similarity /// 0008083 // growth factor activity // traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation 1387451_at NM_130419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130419.1 /DB_XREF=gi:18426845 /GEN=Esdn /FEA=FLmRNA /CNT=5 /TID=Rn.74705.1 /TIER=FL /STK=2 /UG=Rn.74705 /DEF=Rattus norvegicus endothelial and smooth muscle cell-derived neuropilin-like protein (Esdn), mRNA. /PROD=endothelial and smooth muscle cell-derivedneuropilin-like protein /FL=gb:AF387549.1 gb:NM_130419.1 NM_130419 discoidin, CUB and LCCL domain containing 2 Dcbld2 155696 NM_130419 0007155 // cell adhesion // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0030308 // negative regulation of cell growth // inferred from sequence or structural similarity /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0042060 // wound healing // not recorded /// 0042060 // wound healing // inferred from sequence or structural similarity /// 0042060 // wound healing // inferred from electronic annotation 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1387452_a_at NM_031553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031553.1 /DB_XREF=gi:13928749 /GEN=Nfyb /FEA=FLmRNA /CNT=5 /TID=Rn.1131.1 /TIER=FL /STK=2 /UG=Rn.1131 /LL=25336 /DEF=Rattus norvegicus CCAAT binding transcription factor of CBF-BNFY-B (Nfyb), mRNA. /PROD=CCAAT binding transcription factor ofCBF-BNFY-B /FL=gb:M55045.1 gb:NM_031553.1 NM_031553 nuclear transcription factor-Y beta Nfyb 25336 NM_031553 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016602 // CCAAT-binding factor complex // inferred from electronic annotation /// 0016602 // CCAAT-binding factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0070491 // transcription repressor binding // inferred from electronic annotation /// 0070491 // transcription repressor binding // not recorded 1387453_at NM_024489 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024489.1 /DB_XREF=gi:13324707 /GEN=RINZF /FEA=FLmRNA /CNT=4 /TID=Rn.23374.1 /TIER=FL /STK=2 /UG=Rn.23374 /LL=80338 /DEF=Rattus norvegicus zinc finger protein RIN ZF (RINZF), mRNA. /PROD=zinc finger protein RIN ZF /FL=gb:NM_024489.1 gb:AF091457.1 NM_024489 zinc finger and BTB domain containing 10 Zbtb10 80338 NM_024489 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387454_at NM_022242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022242.2 /DB_XREF=gi:15011896 /GEN=Niban /FEA=FLmRNA /CNT=4 /TID=Rn.64482.1 /TIER=FL /STK=2 /UG=Rn.64482 /LL=63912 /DEF=Rattus norvegicus niban protein (Niban), mRNA. /PROD=niban protein /FL=gb:NM_022242.2 gb:AB046718.2 NM_022242 family with sequence similarity 129, member A Fam129a 63912 NM_022242 0001933 // negative regulation of protein phosphorylation // not recorded /// 0001933 // negative regulation of protein phosphorylation // inferred from sequence or structural similarity /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0001934 // positive regulation of protein phosphorylation // inferred from sequence or structural similarity /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0034976 // response to endoplasmic reticulum stress // not recorded /// 0034976 // response to endoplasmic reticulum stress // inferred from sequence or structural similarity /// 0034976 // response to endoplasmic reticulum stress // inferred from electronic annotation /// 0045727 // positive regulation of translation // not recorded /// 0045727 // positive regulation of translation // inferred from sequence or structural similarity /// 0045727 // positive regulation of translation // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 1387455_a_at NM_013155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013155.1 /DB_XREF=gi:6981705 /GEN=Vldlr /FEA=FLmRNA /CNT=4 /TID=Rn.9975.1 /TIER=FL /STK=2 /UG=Rn.9975 /LL=25696 /DEF=Rattus norvegicus Very low density lipoprotein receptor (Vldlr), mRNA. /PROD=very low density lipoprotein receptor /FL=gb:NM_013155.1 gb:L35767.1 NM_013155 very low density lipoprotein receptor Vldlr 25696 NM_013155 0001666 // response to hypoxia // inferred from expression pattern /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // traceable author statement /// 0007507 // heart development // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0021987 // cerebral cortex development // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0034447 // very-low-density lipoprotein particle clearance // not recorded /// 0034447 // very-low-density lipoprotein particle clearance // inferred from sequence or structural similarity /// 0034447 // very-low-density lipoprotein particle clearance // inferred from electronic annotation /// 0042149 // cellular response to glucose starvation // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0071222 // cellular response to lipopolysaccharide // inferred from expression pattern /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from direct assay 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005905 // coated pit // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0034361 // very-low-density lipoprotein particle // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030229 // very-low-density lipoprotein receptor activity // not recorded /// 0030229 // very-low-density lipoprotein receptor activity // inferred from sequence or structural similarity /// 0030229 // very-low-density lipoprotein receptor activity // inferred from electronic annotation /// 0030296 // protein tyrosine kinase activator activity // traceable author statement 1387456_at NM_134466 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134466.1 /DB_XREF=gi:19745195 /GEN=Stau2 /FEA=FLmRNA /CNT=4 /TID=Rn.73714.1 /TIER=FL /STK=2 /UG=Rn.73714 /DEF=Rattus norvegicus staufen, RNA binding protein, homolog 2 (Drosophila) (Stau2), mRNA. /PROD=staufen, RNA binding protein, homolog 2(Drosophila) /FL=gb:NM_134466.1 gb:AF483621.1 NM_134466 staufen, RNA binding protein, homolog 2 (Drosophila) Stau2 171500 NM_001007149 /// NM_001007150 /// NM_134466 0006810 // transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation 1387457_at NM_022248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022248.1 /DB_XREF=gi:11560051 /GEN=Dusp12 /FEA=FLmRNA /CNT=4 /TID=Rn.52231.1 /TIER=FL /STK=2 /UG=Rn.52231 /LL=64014 /DEF=Rattus norvegicus dual specificity phosphatase 12 (Dusp12), mRNA. /PROD=glucokinase-associated dual specificityphosphatase /FL=gb:AF217233.1 gb:NM_022248.1 NM_022248 dual specificity phosphatase 12 Dusp12 64014 NM_022248 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0033133 // positive regulation of glucokinase activity // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0019900 // kinase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1387458_at NM_019182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019182.1 /DB_XREF=gi:9507056 /GEN=Rnf4 /FEA=FLmRNA /CNT=4 /TID=Rn.30015.1 /TIER=FL /STK=2 /UG=Rn.30015 /LL=29274 /DEF=Rattus norvegicus ring finger protein 4 (Rnf4), mRNA. /PROD=ring finger protein 4 /FL=gb:AF022081.1 gb:NM_019182.1 NM_019182 ring finger protein 4 Rnf4 29274 NM_019182 0006350 // transcription // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016567 // protein ubiquitination // inferred from mutant phenotype /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0051865 // protein autoubiquitination // inferred from mutant phenotype /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay /// 0085020 // protein K6-linked ubiquitination // inferred from direct assay /// 0090169 // regulation of spindle assembly // not recorded /// 0090169 // regulation of spindle assembly // inferred from sequence or structural similarity /// 0090234 // regulation of kinetochore assembly // not recorded /// 0090234 // regulation of kinetochore assembly // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activity // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from mutant phenotype /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0017025 // TATA-binding protein binding // traceable author statement /// 0031491 // nucleosome binding // inferred from direct assay /// 0032184 // SUMO polymer binding // inferred from physical interaction /// 0042156 // zinc-mediated transcriptional activator activity // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // inferred from physical interaction 1387459_at NM_012627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012627.1 /DB_XREF=gi:6981393 /GEN=Pkib /FEA=FLmRNA /CNT=4 /TID=Rn.9748.1 /TIER=FL /STK=2 /UG=Rn.9748 /LL=24678 /DEF=Rattus norvegicus cAMP-dependent protein kinase (catalytic subunit binding) inhibtor 2 (Pkib), mRNA. /PROD=cAMP-dependent protein kinase (catalytic subunitbinding) inhibtor 2 /FL=gb:M64092.1 gb:NM_012627.1 NM_012627 protein kinase (cAMP-dependent, catalytic) inhibitor beta Pkib 24678 NM_001076553 /// NM_012627 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0004862 // cAMP-dependent protein kinase inhibitor activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1387460_at BI295853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295853 /DB_XREF=gi:14959716 /DB_XREF=UI-R-DK0-cfb-d-09-0-UI.s1 /CLONE=UI-R-DK0-cfb-d-09-0-UI /FEA=FLmRNA /CNT=9 /TID=Rn.11343.1 /TIER=Stack /STK=6 /UG=Rn.11343 /LL=24773 /UG_GENE=Sftpa1 /UG_TITLE=Surfactant-associated protein 1 (pulmonary surfactant protein, SP-A) /FL=gb:M33201.1 gb:M15754.1 gb:NM_017329.1 BI295853 surfactant protein A1 Sftpa1 24773 NM_017329 0001666 // response to hypoxia // inferred from expression pattern /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0033189 // response to vitamin A // inferred from expression pattern /// 0050766 // positive regulation of phagocytosis // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0055093 // response to hyperoxia // inferred from expression pattern /// 0070741 // response to interleukin-6 // inferred from expression pattern /// 0070849 // response to epidermal growth factor stimulus // inferred from expression pattern /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern /// 0071732 // cellular response to nitric oxide // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005771 // multivesicular body // inferred from direct assay /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0042599 // lamellar body // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0051635 // bacterial cell surface binding // inferred from direct assay 1387461_at L20684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L20684.1 /DB_XREF=gi:409149 /GEN=MUOR1 /FEA=FLmRNA /CNT=7 /TID=Rn.10118.1 /TIER=FL /STK=1 /UG=Rn.10118 /LL=25601 /DEF=Rattus norvegicus Mu opiate receptor (MUOR1) mRNA, complete cds. /PROD=Mu opiate receptor /FL=gb:NM_013071.1 gb:L20684.1 gb:L13069.1 gb:U35424.1 gb:D16349.1 gb:U02083.1 gb:L22455.1 L20684 opioid receptor, mu 1 Oprm1 25601 NM_001038597 /// NM_001038599 /// NM_001038600 /// NM_001038601 /// NM_013071 /// NR_027877 0002438 // acute inflammatory response to antigenic stimulus // inferred from expression pattern /// 0006955 // immune response // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007191 // activation of adenylate cyclase activity by dopamine receptor signaling pathway // not recorded /// 0007191 // activation of adenylate cyclase activity by dopamine receptor signaling pathway // inferred from electronic annotation /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // inferred from direct assay /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007610 // behavior // not recorded /// 0007610 // behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0031635 // inhibition of adenylate cyclase activity by opioid receptor signaling pathway // inferred from direct assay /// 0032094 // response to food // inferred from expression pattern /// 0032100 // positive regulation of appetite // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0042060 // wound healing // inferred from expression pattern /// 0042220 // response to cocaine // inferred from expression pattern /// 0043278 // response to morphine // inferred from expression pattern /// 0045471 // response to ethanol // inferred from direct assay /// 0051930 // regulation of sensory perception of pain // inferred from direct assay /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from direct assay /// 0070848 // response to growth factor stimulus // inferred from expression pattern 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0005925 // focal adhesion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0032590 // dendrite membrane // inferred from direct assay /// 0032839 // dendrite cytoplasm // inferred from direct assay /// 0042383 // sarcolemma // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0044424 // intracellular part // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from direct assay /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004985 // opioid receptor activity // inferred from electronic annotation /// 0004988 // mu-opioid receptor activity // inferred from direct assay /// 0004988 // mu-opioid receptor activity // not recorded /// 0004988 // mu-opioid receptor activity // traceable author statement /// 0004988 // mu-opioid receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1387462_at NM_012527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012527.1 /DB_XREF=gi:6978652 /GEN=Chrm3 /FEA=FLmRNA /CNT=8 /TID=Rn.9666.1 /TIER=FL /STK=2 /UG=Rn.9666 /LL=24260 /DEF=Rattus norvegicus Cholinergic receptor, muscarinic 3 (Chrm3), mRNA. /PROD=cholinergic receptor, muscarinic 3 /FL=gb:M18088.1 gb:NM_012527.1 gb:AB017656.1 NM_012527 cholinergic receptor, muscarinic 3 Chrm3 24260 NM_012527 0003056 // regulation of vascular smooth muscle contraction // inferred from mutant phenotype /// 0006939 // smooth muscle contraction // not recorded /// 0006939 // smooth muscle contraction // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007213 // muscarinic acetylcholine receptor signaling pathway // inferred from direct assay /// 0007213 // muscarinic acetylcholine receptor signaling pathway // inferred from mutant phenotype /// 0007586 // digestion // inferred from electronic annotation /// 0007586 // digestion // not recorded /// 0019229 // regulation of vasoconstriction // inferred from mutant phenotype /// 0045987 // positive regulation of smooth muscle contraction // inferred from mutant phenotype /// 0045987 // positive regulation of smooth muscle contraction // not recorded /// 0045987 // positive regulation of smooth muscle contraction // inferred from electronic annotation 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0032279 // asymmetric synapse // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004981 // muscarinic acetylcholine receptor activity // inferred from direct assay /// 0004981 // muscarinic acetylcholine receptor activity // inferred from mutant phenotype /// 0004981 // muscarinic acetylcholine receptor activity // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0008144 // drug binding // inferred from mutant phenotype /// 0042166 // acetylcholine binding // inferred from mutant phenotype 1387463_at M63112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M63112.1 /DB_XREF=gi:206997 /FEA=FLmRNA /CNT=6 /TID=Rn.9927.1 /TIER=FL /STK=2 /UG=Rn.9927 /LL=24867 /UG_GENE=Vcsa1 /UG_TITLE=Variable coding sequence A1 (androgen regulated protein (SMR1) gene) /DEF=Rat SMR1 protein mRNA, complete cds. /FL=gb:M63112.1 gb:NM_012684.1 M63112 variable coding sequence A1 Vcsa1 24867 NM_012684 0048585 // negative regulation of response to stimulus // inferred from direct assay /// 0051930 // regulation of sensory perception of pain // inferred from direct assay 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from electronic annotation 0004866 // endopeptidase inhibitor activity // inferred from direct assay /// 0005179 // hormone activity // inferred from direct assay /// 0005179 // hormone activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from direct assay 1387464_at NM_013133 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013133.1 /DB_XREF=gi:6980949 /GEN=Glra1 /FEA=FLmRNA /CNT=6 /TID=Rn.10109.1 /TIER=FL /STK=2 /UG=Rn.10109 /LL=25674 /DEF=Rattus norvegicus Glycine receptor, alpha 1 subunit (Glra1), mRNA. /PROD=glycine receptor, alpha 1 subunit /FL=gb:NM_013133.1 gb:D00833.1 NM_013133 glycine receptor, alpha 1 Glra1 25674 NM_013133 0001508 // regulation of action potential // not recorded /// 0001508 // regulation of action potential // inferred from electronic annotation /// 0001964 // startle response // not recorded /// 0001964 // startle response // inferred from sequence or structural similarity /// 0001964 // startle response // inferred from electronic annotation /// 0002087 // regulation of respiratory gaseous exchange by neurological system process // not recorded /// 0002087 // regulation of respiratory gaseous exchange by neurological system process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // not recorded /// 0006811 // ion transport // inferred from sequence or structural similarity /// 0006811 // ion transport // inferred from electronic annotation /// 0006820 // anion transport // inferred from direct assay /// 0006821 // chloride transport // inferred from direct assay /// 0006821 // chloride transport // not recorded /// 0006821 // chloride transport // inferred from sequence or structural similarity /// 0006821 // chloride transport // inferred from electronic annotation /// 0006936 // muscle contraction // not recorded /// 0006936 // muscle contraction // inferred from sequence or structural similarity /// 0006936 // muscle contraction // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007218 // neuropeptide signaling pathway // inferred from sequence or structural similarity /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007340 // acrosome reaction // not recorded /// 0007340 // acrosome reaction // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0007601 // visual perception // inferred from electronic annotation /// 0007628 // adult walking behavior // not recorded /// 0007628 // adult walking behavior // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0042391 // regulation of membrane potential // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0043576 // regulation of respiratory gaseous exchange // not recorded /// 0043576 // regulation of respiratory gaseous exchange // inferred from electronic annotation /// 0050884 // neuromuscular process controlling posture // not recorded /// 0050884 // neuromuscular process controlling posture // inferred from electronic annotation /// 0050905 // neuromuscular process // not recorded /// 0050905 // neuromuscular process // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051970 // negative regulation of transmission of nerve impulse // not recorded /// 0051970 // negative regulation of transmission of nerve impulse // inferred from sequence or structural similarity /// 0051970 // negative regulation of transmission of nerve impulse // inferred from electronic annotation /// 0060012 // synaptic transmission, glycinergic // inferred from direct assay /// 0060012 // synaptic transmission, glycinergic // not recorded /// 0060012 // synaptic transmission, glycinergic // inferred from electronic annotation /// 0060013 // righting reflex // not recorded /// 0060013 // righting reflex // inferred from electronic annotation /// 0060080 // regulation of inhibitory postsynaptic membrane potential // not recorded /// 0060080 // regulation of inhibitory postsynaptic membrane potential // inferred from electronic annotation 0005622 // intracellular // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from sequence or structural similarity /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0045211 // postsynaptic membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016594 // glycine binding // inferred from direct assay /// 0016594 // glycine binding // not recorded /// 0016594 // glycine binding // inferred from sequence or structural similarity /// 0016594 // glycine binding // inferred from electronic annotation /// 0016933 // extracellular-glycine-gated ion channel activity // inferred from direct assay /// 0016934 // extracellular-glycine-gated chloride channel activity // inferred from direct assay /// 0016934 // extracellular-glycine-gated chloride channel activity // not recorded /// 0016934 // extracellular-glycine-gated chloride channel activity // inferred from sequence or structural similarity /// 0016934 // extracellular-glycine-gated chloride channel activity // inferred from electronic annotation /// 0022824 // transmitter-gated ion channel activity // inferred from electronic annotation /// 0030977 // taurine binding // not recorded /// 0030977 // taurine binding // inferred from sequence or structural similarity /// 0030977 // taurine binding // inferred from electronic annotation 1387465_a_at NM_031038 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031038.1 /DB_XREF=gi:13591958 /GEN=Gnrhr /FEA=FLmRNA /CNT=7 /TID=Rn.10268.1 /TIER=FL /STK=2 /UG=Rn.10268 /LL=81668 /DEF=Rattus norvegicus gonadotropin-releasing hormone receptor (Gnrhr), mRNA. /PROD=gonadotropin-releasing hormone receptor /FL=gb:L07646.1 gb:NM_031038.1 gb:L25053.1 NM_031038 gonadotropin releasing hormone receptor Gnrhr 81668 NM_031038 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from direct assay 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004968 // gonadotropin-releasing hormone receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016520 // growth hormone-releasing hormone receptor activity // inferred from direct assay 1387466_a_at U68490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U68490.1 /DB_XREF=gi:1857148 /FEA=FLmRNA /CNT=1 /TID=Rn.32096.2 /TIER=FL /STK=1 /UG=Rn.32096 /LL=65032 /UG_GENE=Htr7 /DEF=Rattus norvegicus 5-hydroxytryptamine7 receptor isoform c mRNA, complete cds. /PROD=5-hydroxytryptamine7 receptor isoform c /FL=gb:U68490.1 U68490 5-hydroxytryptamine (serotonin) receptor 7 Htr7 65032 NM_022938 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007187 // G-protein signaling, coupled to cyclic nucleotide second messenger // traceable author statement /// 0007192 // activation of adenylate cyclase activity by serotonin receptor signaling pathway // inferred from direct assay /// 0007210 // serotonin receptor signaling pathway // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030594 // neurotransmitter receptor activity // inferred from direct assay 1387467_at NM_031602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031602.1 /DB_XREF=gi:13928821 /GEN=Kcnj10 /FEA=FLmRNA /CNT=4 /TID=Rn.10196.1 /TIER=FL /STK=2 /UG=Rn.10196 /LL=29718 /DEF=Rattus norvegicus potassium inwardly-rectifying channel, subfamily J, member 10 (Kcnj10), mRNA. /PROD=potassium inwardly-rectifying channel, subfamilyJ, member 10 /FL=gb:NM_031602.1 gb:U27558.1 NM_031602 potassium inwardly-rectifying channel, subfamily J, member 10 Kcnj10 29718 NM_031602 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // not recorded /// 0006954 // inflammatory response // inferred from expression pattern /// 0009637 // response to blue light // inferred from expression pattern /// 0010107 // potassium ion import // inferred from mutant phenotype /// 0021554 // optic nerve development // inferred from expression pattern /// 0034220 // ion transmembrane transport // not recorded /// 0051289 // protein homotetramerization // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051385 // response to mineralocorticoid stimulus // inferred from expression pattern /// 0051930 // regulation of sensory perception of pain // inferred from mutant phenotype /// 0051938 // L-glutamate import // inferred from mutant phenotype /// 0060081 // membrane hyperpolarization // inferred from mutant phenotype 0005902 // microvillus // inferred from direct assay /// 0016010 // dystrophin-associated glycoprotein complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay 1387468_at NM_012882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012882.1 /DB_XREF=gi:6981587 /GEN=Sstr5 /FEA=FLmRNA /CNT=4 /TID=Rn.9985.1 /TIER=FL /STK=2 /UG=Rn.9985 /LL=25354 /DEF=Rattus norvegicus Somatostatin receptor subtype 5 (Sstr5), mRNA. /PROD=somatostatin receptor subtype 5 /FL=gb:L04535.1 gb:NM_012882.1 NM_012882 somatostatin receptor 5 Sstr5 25354 NM_012882 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // inferred from direct assay /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042593 // glucose homeostasis // not recorded /// 0050796 // regulation of insulin secretion // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // not recorded /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004994 // somatostatin receptor activity // inferred from direct assay /// 0004994 // somatostatin receptor activity // inferred from electronic annotation 1387469_at NM_019173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019173.1 /DB_XREF=gi:9506710 /GEN=Galr3 /FEA=FLmRNA /CNT=4 /TID=Rn.30069.1 /TIER=FL /STK=2 /UG=Rn.30069 /LL=29235 /DEF=Rattus norvegicus galanin receptor 3 (Galr3), mRNA. /PROD=galanin receptor 3 /FL=gb:NM_019173.1 gb:AF073798.1 gb:AF031522.1 gb:AF079844.1 NM_019173 galanin receptor 3 Galr3 29235 NM_019173 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // inferred from mutant phenotype /// 0007218 // neuropeptide signaling pathway // inferred from direct assay /// 0030818 // negative regulation of cAMP biosynthetic process // inferred from mutant phenotype 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004966 // galanin receptor activity // inferred from direct assay /// 0004966 // galanin receptor activity // inferred from electronic annotation 1387470_at NM_031699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031699.1 /DB_XREF=gi:13928975 /GEN=Cldn1 /FEA=FLmRNA /CNT=4 /TID=Rn.24293.1 /TIER=FL /STK=2 /UG=Rn.24293 /LL=65129 /DEF=Rattus norvegicus claudin 1 (Cldn1), mRNA. /PROD=claudin 1 /FL=gb:NM_031699.1 gb:AF195500.1 NM_031699 claudin 1 Cldn1 65129 NM_031699 0016338 // calcium-independent cell-cell adhesion // not recorded /// 0016338 // calcium-independent cell-cell adhesion // inferred from sequence or structural similarity /// 0016338 // calcium-independent cell-cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005923 // tight junction // inferred from direct assay /// 0005923 // tight junction // not recorded /// 0005923 // tight junction // inferred from sequence or structural similarity /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030054 // cell junction // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from sequence or structural similarity /// 0042802 // identical protein binding // inferred from electronic annotation 1387471_at NM_012553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012553.1 /DB_XREF=gi:6978802 /GEN=Ela2 /FEA=FLmRNA /CNT=4 /TID=Rn.10272.1 /TIER=FL /STK=2 /UG=Rn.10272 /LL=24332 /DEF=Rattus norvegicus Elastase 2, pancreatic (Ela2), mRNA. /PROD=elastase 2, pancreatic /FL=gb:NM_012553.1 NM_012553 chymotrypsin-like elastase family, member 2A Cela2a 24332 NM_012553 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387472_at NM_013169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013169.1 /DB_XREF=gi:7709997 /GEN=Cd3d /FEA=FLmRNA /CNT=4 /TID=Rn.10329.1 /TIER=FL /STK=2 /UG=Rn.10329 /LL=25710 /DEF=Rattus norvegicus CD3 antigen delta polypeptide (Cd3d), mRNA. /PROD=CD3 antigen delta polypeptide /FL=gb:NM_013169.1 NM_013169 CD3 molecule delta polypeptide Cd3d 25710 NM_013169 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0045059 // positive thymic T cell selection // not recorded /// 0045059 // positive thymic T cell selection // inferred from sequence or structural similarity /// 0045059 // positive thymic T cell selection // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042101 // T cell receptor complex // not recorded /// 0042101 // T cell receptor complex // inferred from electronic annotation /// 0042105 // alpha-beta T cell receptor complex // inferred from electronic annotation /// 0042105 // alpha-beta T cell receptor complex // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1387473_at NM_017056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017056.1 /DB_XREF=gi:8394471 /GEN=Tnp1 /FEA=FLmRNA /CNT=4 /TID=Rn.9959.1 /TIER=FL /STK=2 /UG=Rn.9959 /LL=24839 /DEF=Rattus norvegicus Transition protein 1 (Tnp1), mRNA. /PROD=transition protein 1 /FL=gb:NM_017056.1 gb:M17096.1 NM_017056 transition protein 1 Tnp1 24839 NM_017056 0000012 // single strand break repair // not recorded /// 0000012 // single strand break repair // inferred from sequence or structural similarity /// 0000012 // single strand break repair // inferred from electronic annotation /// 0006337 // nucleosome disassembly // not recorded /// 0006337 // nucleosome disassembly // inferred from sequence or structural similarity /// 0006337 // nucleosome disassembly // inferred from electronic annotation /// 0006338 // chromatin remodeling // not recorded /// 0006338 // chromatin remodeling // inferred from sequence or structural similarity /// 0006338 // chromatin remodeling // inferred from electronic annotation /// 0006342 // chromatin silencing // not recorded /// 0006342 // chromatin silencing // inferred from sequence or structural similarity /// 0006342 // chromatin silencing // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007286 // spermatid development // not recorded /// 0007286 // spermatid development // inferred from sequence or structural similarity /// 0007286 // spermatid development // inferred from electronic annotation /// 0007290 // spermatid nucleus elongation // not recorded /// 0007290 // spermatid nucleus elongation // inferred from sequence or structural similarity /// 0007290 // spermatid nucleus elongation // inferred from electronic annotation /// 0019953 // sexual reproduction // not recorded /// 0019953 // sexual reproduction // inferred from sequence or structural similarity /// 0019953 // sexual reproduction // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030317 // sperm motility // not recorded /// 0030317 // sperm motility // inferred from sequence or structural similarity /// 0030317 // sperm motility // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation 0000786 // nucleosome // not recorded /// 0000786 // nucleosome // inferred from sequence or structural similarity /// 0000786 // nucleosome // inferred from electronic annotation /// 0001673 // male germ cell nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation 1387474_at J05097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J05097.1 /DB_XREF=gi:207051 /FEA=FLmRNA /CNT=4 /TID=Rn.9934.1 /TIER=FL /STK=2 /UG=Rn.9934 /LL=24807 /UG_GENE=Tacr1 /UG_TITLE=Tachykinin 1 receptor (substance P receptor, neurokinin 1 receptor), see also D4Mgh17, D4Wox19 and D4Mit23 /DEF=Rat substance P receptor (SPR) mRNA, complete cds. /FL=gb:M31477.1 gb:NM_012667.1 gb:J05097.1 J05097 tachykinin receptor 1 Tacr1 24807 NM_012667 0002118 // aggressive behavior // inferred from mutant phenotype /// 0002526 // acute inflammatory response // inferred from expression pattern /// 0003079 // positive regulation of natriuresis // inferred from mutant phenotype /// 0006950 // response to stress // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0007217 // tachykinin receptor signaling pathway // not recorded /// 0007217 // tachykinin receptor signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // traceable author statement /// 0007616 // long-term memory // inferred from mutant phenotype /// 0008217 // regulation of blood pressure // inferred from mutant phenotype /// 0008306 // associative learning // inferred from mutant phenotype /// 0009408 // response to heat // inferred from mutant phenotype /// 0009725 // response to hormone stimulus // inferred from mutant phenotype /// 0010193 // response to ozone // inferred from mutant phenotype /// 0010634 // positive regulation of epithelial cell migration // inferred from mutant phenotype /// 0010996 // response to auditory stimulus // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0019233 // sensory perception of pain // inferred from mutant phenotype /// 0019233 // sensory perception of pain // traceable author statement /// 0032224 // positive regulation of synaptic transmission, cholinergic // inferred from mutant phenotype /// 0032230 // positive regulation of synaptic transmission, GABAergic // inferred from mutant phenotype /// 0035094 // response to nicotine // inferred from mutant phenotype /// 0035106 // operant conditioning // inferred from mutant phenotype /// 0042713 // sperm ejaculation // inferred from mutant phenotype /// 0042755 // eating behavior // inferred from mutant phenotype /// 0043278 // response to morphine // inferred from expression pattern /// 0045471 // response to ethanol // inferred from mutant phenotype /// 0045760 // positive regulation of action potential // inferred from mutant phenotype /// 0045777 // positive regulation of blood pressure // inferred from mutant phenotype /// 0045778 // positive regulation of ossification // inferred from mutant phenotype /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype /// 0048265 // response to pain // not recorded /// 0048265 // response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // inferred from mutant phenotype /// 0050671 // positive regulation of lymphocyte proliferation // inferred from mutant phenotype /// 0050679 // positive regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0051496 // positive regulation of stress fiber assembly // inferred from mutant phenotype /// 0060083 // smooth muscle contraction involved in micturition // inferred from mutant phenotype /// 0070474 // positive regulation of uterine smooth muscle contraction // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004995 // tachykinin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016496 // substance P receptor activity // inferred from direct assay 1387475_at NM_133302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133302.1 /DB_XREF=gi:18959239 /GEN=Adar3 /FEA=FLmRNA /CNT=4 /TID=Rn.10683.1 /TIER=FL /STK=2 /UG=Rn.10683 /LL=117088 /DEF=Rattus norvegicus adenosine deaminase 3, RNA dependent (Adar3), mRNA. /PROD=adenosine deaminase 3, RNA dependent /FL=gb:U74586.1 gb:NM_133302.1 NM_133302 adenosine deaminase, RNA-specific, B2 Adarb2 117088 NM_133302 0006396 // RNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0004000 // adenosine deaminase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387476_at NM_031730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031730.1 /DB_XREF=gi:13929025 /GEN=Kcnd2 /FEA=FLmRNA /CNT=4 /TID=Rn.10754.1 /TIER=FL /STK=2 /UG=Rn.10754 /LL=65180 /DEF=Rattus norvegicus potassium voltage gated channel, Shal-related family, member 2 (Kcnd2), mRNA. /PROD=potassium channel Kv4.2 /FL=gb:M59980.1 gb:NM_031730.1 NM_031730 potassium voltage-gated channel, Shal-related subfamily, member 2 Kcnd2 65180 NM_031730 0001508 // regulation of action potential // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // traceable author statement /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0008076 // voltage-gated potassium channel complex // inferred from direct assay /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0005216 // ion channel activity // inferred from direct assay /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from direct assay /// 0005249 // voltage-gated potassium channel activity // inferred from mutant phenotype /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005250 // A-type (transient outward) potassium channel activity // inferred from mutant phenotype /// 0005267 // potassium channel activity // inferred from direct assay /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay 1387477_at NM_022292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022292.1 /DB_XREF=gi:11560126 /GEN=Kcnk12 /FEA=FLmRNA /CNT=4 /TID=Rn.64577.1 /TIER=FL /STK=2 /UG=Rn.64577 /LL=64119 /DEF=Rattus norvegicus tandem pore domain potassium channel THIK-2 (Kcnk12), mRNA. /PROD=tandem pore domain potassium channel THIK-2 /FL=gb:AF287300.1 gb:NM_022292.1 NM_022292 potassium channel, subfamily K, member 12 Kcnk12 64119 NM_022292 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation 1387478_at NM_013109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013109.1 /DB_XREF=gi:6981313 /GEN=Otx1 /FEA=FLmRNA /CNT=4 /TID=Rn.33443.1 /TIER=FL /STK=2 /UG=Rn.33443 /LL=25646 /DEF=Rattus norvegicus Orthodenticle (Drosophila) homolog 1 (Otx1), mRNA. /PROD=orthodenticle (Drosophila) homolog 1 /FL=gb:L32602.1 gb:NM_013109.1 NM_013109 orthodenticle homeobox 1 Otx1 25646 NM_013109 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0030900 // forebrain development // not recorded /// 0030901 // midbrain development // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1387479_at NM_130425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130425.1 /DB_XREF=gi:18426855 /GEN=Runx3 /FEA=FLmRNA /CNT=4 /TID=Rn.81066.1 /TIER=FL /STK=2 /UG=Rn.81066 /DEF=Rattus norvegicus Runt related transcription factor 3 (Runx3), mRNA. /PROD=Runt related transcription factor 3 /FL=gb:NM_130425.1 gb:AF421886.1 NM_130425 runt-related transcription factor 3 Runx3 156726 NM_130425 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from sequence or structural similarity /// 0007411 // axon guidance // not recorded /// 0031069 // hair follicle morphogenesis // not recorded /// 0031175 // neuron projection development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // not recorded /// 0045786 // negative regulation of cell cycle // inferred from sequence or structural similarity /// 0048469 // cell maturation // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1387480_at NM_024358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024358.1 /DB_XREF=gi:13242246 /GEN=Notch2 /FEA=FLmRNA /CNT=3 /TID=Rn.65930.1 /TIER=FL /STK=2 /UG=Rn.65930 /LL=29492 /DEF=Rattus norvegicus Notch gene homolog 2, (Drosophila) (Notch2), mRNA. /PROD=Notch gene homolog 2, (Drosophila) /FL=gb:NM_024358.1 gb:M93661.1 NM_024358 Notch homolog 2 (Drosophila) Notch2 29492 NM_024358 0001709 // cell fate determination // inferred from direct assay /// 0002011 // morphogenesis of an epithelial sheet // inferred from electronic annotation /// 0002011 // morphogenesis of an epithelial sheet // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0007050 // cell cycle arrest // inferred from sequence or structural similarity /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from sequence or structural similarity /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0016049 // cell growth // not recorded /// 0016049 // cell growth // inferred from sequence or structural similarity /// 0016049 // cell growth // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0042060 // wound healing // not recorded /// 0042060 // wound healing // inferred from electronic annotation /// 0042246 // tissue regeneration // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from sequence or structural similarity /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0050793 // regulation of developmental process // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0009986 // cell surface // traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1387481_at NM_030841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030841.1 /DB_XREF=gi:13540542 /GEN=Npr /FEA=FLmRNA /CNT=3 /TID=Rn.34907.1 /TIER=FL /STK=2 /UG=Rn.34907 /LL=81005 /DEF=Rattus norvegicus neuronal pentraxin receptor (Npr), mRNA. /PROD=neuronal pentraxin receptor /FL=gb:AF005099.1 gb:NM_030841.1 NM_030841 neuronal pentraxin receptor Nptxr 81005 NM_030841 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from expression pattern 0000785 // chromatin // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003682 // chromatin binding // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0008029 // pentraxin receptor activity // inferred from direct assay /// 0032403 // protein complex binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1387482_at NM_024379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024379.1 /DB_XREF=gi:13259381 /GEN=Grid2 /FEA=FLmRNA /CNT=3 /TID=Rn.10046.1 /TIER=FL /STK=2 /UG=Rn.10046 /LL=79220 /DEF=Rattus norvegicus glutamate receptor delta-2 subunit (Grid2), mRNA. /PROD=glutamate receptor delta-2 subunit /FL=gb:NM_024379.1 gb:U08256.1 NM_024379 glutamate receptor, ionotropic, delta 2 Grid2 79220 NM_024379 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0035249 // synaptic transmission, glutamatergic // inferred from electronic annotation /// 0035249 // synaptic transmission, glutamatergic // not recorded /// 0043523 // regulation of neuron apoptosis // inferred from electronic annotation /// 0043523 // regulation of neuron apoptosis // not recorded /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded /// 0060134 // prepulse inhibition // inferred from electronic annotation /// 0060134 // prepulse inhibition // not recorded 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030288 // outer membrane-bounded periplasmic space // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387483_at NM_017168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017168.1 /DB_XREF=gi:8393983 /GEN=Plcg2 /FEA=FLmRNA /CNT=3 /TID=Rn.9751.1 /TIER=FL /STK=2 /UG=Rn.9751 /LL=29337 /DEF=Rattus norvegicus phospholipase C, gamma 2 (Plcg2), mRNA. /PROD=phospholipase C, gamma 2 /FL=gb:J05155.1 gb:NM_017168.1 NM_017168 phospholipase C, gamma 2 Plcg2 29337 NM_017168 0002316 // follicular B cell differentiation // inferred from electronic annotation /// 0002316 // follicular B cell differentiation // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0009395 // phospholipid catabolic process // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0032026 // response to magnesium ion // inferred from direct assay /// 0032237 // activation of store-operated calcium channel activity // inferred from electronic annotation /// 0032237 // activation of store-operated calcium channel activity // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0032959 // inositol trisphosphate biosynthetic process // inferred from electronic annotation /// 0032959 // inositol trisphosphate biosynthetic process // not recorded /// 0033198 // response to ATP // inferred from direct assay /// 0043069 // negative regulation of programmed cell death // inferred from electronic annotation /// 0043069 // negative regulation of programmed cell death // not recorded /// 0050852 // T cell receptor signaling pathway // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // not recorded 0004435 // phosphoinositide phospholipase C activity // inferred from direct assay /// 0004435 // phosphoinositide phospholipase C activity // inferred from electronic annotation /// 0004629 // phospholipase C activity // not recorded /// 0004629 // phospholipase C activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387484_at NM_017256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017256.1 /DB_XREF=gi:8394445 /GEN=Tgfbr3 /FEA=FLmRNA /CNT=3 /TID=Rn.9953.1 /TIER=FL /STK=2 /UG=Rn.9953 /LL=29610 /DEF=Rattus norvegicus transforming growth factor, beta receptor III (Tgfbr3), mRNA. /PROD=transforming growth factor, beta receptor III /FL=gb:M77809.1 gb:M80784.1 gb:NM_017256.1 NM_017256 transforming growth factor, beta receptor III Tgfbr3 29610 NM_017256 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001824 // blastocyst development // inferred from electronic annotation /// 0001824 // blastocyst development // not recorded /// 0001837 // epithelial to mesenchymal transition // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0006461 // protein complex assembly // inferred from direct assay /// 0006955 // immune response // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // non-traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007181 // transforming growth factor beta receptor complex assembly // inferred from mutant phenotype /// 0007243 // intracellular protein kinase cascade // not recorded /// 0010633 // negative regulation of epithelial cell migration // inferred from electronic annotation /// 0010633 // negative regulation of epithelial cell migration // not recorded /// 0010719 // negative regulation of epithelial to mesenchymal transition // inferred from electronic annotation /// 0010719 // negative regulation of epithelial to mesenchymal transition // not recorded /// 0016049 // cell growth // inferred from mutant phenotype /// 0016310 // phosphorylation // not recorded /// 0030509 // BMP signaling pathway // not recorded /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // inferred from direct assay /// 0031100 // organ regeneration // inferred from expression pattern /// 0032354 // response to follicle-stimulating hormone stimulus // not recorded /// 0034695 // response to prostaglandin E stimulus // not recorded /// 0034699 // response to luteinizing hormone stimulus // not recorded /// 0043393 // regulation of protein binding // inferred from direct assay /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051271 // negative regulation of cellular component movement // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded /// 0060038 // cardiac muscle cell proliferation // inferred from electronic annotation /// 0060038 // cardiac muscle cell proliferation // not recorded /// 0060216 // definitive hemopoiesis // not recorded /// 0060216 // definitive hemopoiesis // inferred from electronic annotation /// 0060317 // cardiac epithelial to mesenchymal transition // not recorded /// 0060318 // definitive erythrocyte differentiation // inferred from electronic annotation /// 0060318 // definitive erythrocyte differentiation // not recorded /// 0060347 // heart trabecula formation // inferred from electronic annotation /// 0060347 // heart trabecula formation // not recorded /// 0060389 // pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0060389 // pathway-restricted SMAD protein phosphorylation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from direct assay /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // traceable author statement /// 0034673 // inhibin-betaglycan-ActRII complex // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta receptor activity // not recorded /// 0005024 // transforming growth factor beta receptor activity // traceable author statement /// 0005024 // transforming growth factor beta receptor activity // inferred from electronic annotation /// 0005114 // type II transforming growth factor beta receptor binding // not recorded /// 0005160 // transforming growth factor beta receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005539 // glycosaminoglycan binding // not recorded /// 0005539 // glycosaminoglycan binding // traceable author statement /// 0005539 // glycosaminoglycan binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from direct assay /// 0015026 // coreceptor activity // not recorded /// 0030165 // PDZ domain binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // not recorded /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046332 // SMAD binding // not recorded /// 0048185 // activin binding // inferred from direct assay /// 0048603 // fibroblast growth factor 2 binding // inferred from direct assay /// 0050431 // transforming growth factor beta binding // inferred from direct assay /// 0050431 // transforming growth factor beta binding // not recorded /// 0050431 // transforming growth factor beta binding // non-traceable author statement /// 0050431 // transforming growth factor beta binding // inferred from electronic annotation /// 0070123 // transforming growth factor beta receptor activity, type III // inferred from direct assay /// 0070123 // transforming growth factor beta receptor activity, type III // not recorded 1387485_a_at M83297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M83297.1 /DB_XREF=gi:206296 /GEN=PP2A /FEA=FLmRNA /CNT=1 /TID=Rn.81155.4 /TIER=FL /STK=1 /UG=Rn.81155 /LL=117104 /DEF=Rat protein phosphatase 2A (PP2A) 55 kD protein regulatory subunit B mRNA, complete cds. /PROD=protein phosphatase 2A 55 kD regulatory subunitB /FL=gb:M83297.1 M83297 protein phosphatase 2 (formerly 2A), regulatory subunit B, alpha isoform Ppp2r2a 117104 NM_053999 0006470 // protein dephosphorylation // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0043278 // response to morphine // inferred from electronic annotation /// 0043278 // response to morphine // not recorded 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation /// 0000159 // protein phosphatase type 2A complex // not recorded 0004722 // protein serine/threonine phosphatase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008601 // protein phosphatase type 2A regulator activity // inferred from electronic annotation 1387486_at NM_130420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130420.1 /DB_XREF=gi:18426847 /GEN=Trim9 /FEA=FLmRNA /CNT=3 /TID=Rn.81077.1 /TIER=FL /STK=2 /UG=Rn.81077 /DEF=Rattus norvegicus tripartite motif protein 9 (Trim9), mRNA. /PROD=tripartite motif protein 9 /FL=gb:NM_130420.1 gb:AF350422.1 NM_130420 tripartite motif-containing 9 Trim9 155812 NM_130420 0016079 // synaptic vesicle exocytosis // inferred from expression pattern /// 0035544 // negative regulation of SNARE complex assembly // inferred from direct assay /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0045955 // negative regulation of calcium ion-dependent exocytosis // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0030425 // dendrite // inferred from sequence or structural similarity /// 0030425 // dendrite // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0000149 // SNARE binding // inferred from physical interaction /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1387487_a_at NM_053816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053816.1 /DB_XREF=gi:16758659 /GEN=Calcr /FEA=FLmRNA /CNT=3 /TID=Rn.10062.1 /TIER=FL /STK=2 /UG=Rn.10062 /LL=116506 /DEF=Rattus norvegicus calcitonin receptor (Calcr), mRNA. /PROD=calcitonin receptor /FL=gb:L13040.1 gb:NM_053816.1 gb:L14618.1 NM_053816 calcitonin receptor Calcr 116506 NM_001034015 /// NM_053816 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from direct assay /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007202 // activation of phospholipase C activity // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0030279 // negative regulation of ossification // inferred from electronic annotation /// 0030279 // negative regulation of ossification // not recorded /// 0030316 // osteoclast differentiation // inferred from electronic annotation /// 0030316 // osteoclast differentiation // not recorded /// 0043488 // regulation of mRNA stability // inferred from electronic annotation /// 0043488 // regulation of mRNA stability // not recorded /// 0045124 // regulation of bone resorption // not recorded /// 0045762 // positive regulation of adenylate cyclase activity // inferred from electronic annotation /// 0045762 // positive regulation of adenylate cyclase activity // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // not recorded 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0001669 // acrosomal vesicle // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0044442 // microtubule-based flagellum part // inferred from electronic annotation /// 0044442 // microtubule-based flagellum part // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004948 // calcitonin receptor activity // inferred from direct assay /// 0004948 // calcitonin receptor activity // inferred from electronic annotation /// 0004948 // calcitonin receptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0032841 // calcitonin binding // inferred from direct assay /// 0032841 // calcitonin binding // not recorded /// 0032841 // calcitonin binding // inferred from electronic annotation 1387488_a_at L13041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L13041.1 /DB_XREF=gi:294530 /FEA=FLmRNA /CNT=3 /TID=Rn.10062.2 /TIER=FL /STK=2 /UG=Rn.10062 /LL=116506 /UG_GENE=Calcr /DEF=Rattus norvegicus calcitonin receptor mRNA, complete cds. /PROD=calcitonin receptor /FL=gb:L13041.1 gb:L14617.1 L13041 calcitonin receptor Calcr 116506 NM_001034015 /// NM_053816 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from direct assay /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007202 // activation of phospholipase C activity // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0030279 // negative regulation of ossification // inferred from electronic annotation /// 0030279 // negative regulation of ossification // not recorded /// 0030316 // osteoclast differentiation // inferred from electronic annotation /// 0030316 // osteoclast differentiation // not recorded /// 0043488 // regulation of mRNA stability // inferred from electronic annotation /// 0043488 // regulation of mRNA stability // not recorded /// 0045124 // regulation of bone resorption // not recorded /// 0045762 // positive regulation of adenylate cyclase activity // inferred from electronic annotation /// 0045762 // positive regulation of adenylate cyclase activity // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // not recorded 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0001669 // acrosomal vesicle // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0044442 // microtubule-based flagellum part // inferred from electronic annotation /// 0044442 // microtubule-based flagellum part // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004948 // calcitonin receptor activity // inferred from direct assay /// 0004948 // calcitonin receptor activity // inferred from electronic annotation /// 0004948 // calcitonin receptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0032841 // calcitonin binding // inferred from direct assay /// 0032841 // calcitonin binding // not recorded /// 0032841 // calcitonin binding // inferred from electronic annotation 1387489_at NM_020097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020097.1 /DB_XREF=gi:9910529 /GEN=Extl3 /FEA=FLmRNA /CNT=3 /TID=Rn.48671.1 /TIER=FL /STK=2 /UG=Rn.48671 /LL=56819 /DEF=Rattus norvegicus exostoses (multiple)-like 3 (Extl3), mRNA. /PROD=Reg receptor /FL=gb:NM_020097.1 gb:AB033367.1 NM_020097 exostoses (multiple)-like 3 Extl3 56819 NM_020097 0030307 // positive regulation of cell growth // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031227 // intrinsic to endoplasmic reticulum membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1387490_at NM_022713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022713.1 /DB_XREF=gi:12083684 /GEN=Dp1 /FEA=FLmRNA /CNT=3 /TID=Rn.9964.1 /TIER=FL /STK=2 /UG=Rn.9964 /LL=64679 /DEF=Rattus norvegicus dorsal protein 1 (Dp1), mRNA. /PROD=dorsal protein 1 /FL=gb:M90310.1 gb:NM_022713.1 NM_022713 0018149 // peptide cross-linking // inferred from electronic annotation /// 0042628 // mating plug formation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0003810 // protein-glutamine gamma-glutamyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387491_at NM_024381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024381.1 /DB_XREF=gi:13324691 /GEN=Gyk /FEA=FLmRNA /CNT=3 /TID=Rn.44654.1 /TIER=FL /STK=2 /UG=Rn.44654 /LL=79223 /DEF=Rattus norvegicus ATP-stimulated glucocorticoid-receptor translocaton promoter (Gyk), mRNA. /PROD=ATP-stimulated glucocorticoid-receptortranslocaton promoter /FL=gb:D16102.1 gb:NM_024381.1 NM_024381 glycerol kinase Gk 79223 NM_024381 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006071 // glycerol metabolic process // not recorded /// 0006071 // glycerol metabolic process // inferred from electronic annotation /// 0006072 // glycerol-3-phosphate metabolic process // inferred from electronic annotation /// 0009409 // response to cold // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0016310 // phosphorylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045471 // response to ethanol // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004370 // glycerol kinase activity // inferred from electronic annotation /// 0004370 // glycerol kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0042393 // histone binding // inferred from direct assay 1387492_at NM_022667 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022667.1 /DB_XREF=gi:12083596 /GEN=Matr1 /FEA=FLmRNA /CNT=3 /TID=Rn.9671.1 /TIER=FL /STK=2 /UG=Rn.9671 /LL=24546 /DEF=Rattus norvegicus Matrin FG (Matr1), mRNA. /PROD=matrin FG /FL=gb:M64862.1 gb:NM_022667.1 NM_022667 solute carrier organic anion transporter family, member 2a1 Slco2a1 24546 NM_022667 0006810 // transport // inferred from electronic annotation /// 0015732 // prostaglandin transport // not recorded /// 0015732 // prostaglandin transport // inferred from electronic annotation /// 0055085 // transmembrane transport // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015132 // prostaglandin transmembrane transporter activity // inferred from electronic annotation /// 0015132 // prostaglandin transmembrane transporter activity // not recorded 1387493_at NM_133515 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133515.1 /DB_XREF=gi:19424155 /GEN=Akap5 /FEA=FLmRNA /CNT=3 /TID=Rn.9983.1 /TIER=FL /STK=2 /UG=Rn.9983 /LL=171026 /DEF=Rattus norvegicus A kinase (PRKA) anchor protein 5 (Akap5), mRNA. /PROD=A kinase (PRKA) anchor protein 5 /FL=gb:NM_133515.1 gb:U67136.1 NM_133515 A kinase (PRKA) anchor protein 5 Akap5 171026 NM_133515 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0006605 // protein targeting // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from direct assay /// 0010739 // positive regulation of protein kinase A signaling cascade // inferred from electronic annotation /// 0010739 // positive regulation of protein kinase A signaling cascade // not recorded /// 0014850 // response to muscle activity // inferred from expression pattern /// 0021510 // spinal cord development // inferred from expression pattern /// 0021766 // hippocampus development // inferred from expression pattern /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // not recorded /// 0043267 // negative regulation of potassium ion transport // inferred from mutant phenotype /// 0043271 // negative regulation of ion transport // inferred from mutant phenotype /// 0043624 // cellular protein complex disassembly // inferred from direct assay /// 0050775 // positive regulation of dendrite morphogenesis // inferred from mutant phenotype /// 0051533 // positive regulation of NFAT protein import into nucleus // inferred from mutant phenotype /// 0051602 // response to electrical stimulus // inferred from expression pattern /// 0060135 // maternal process involved in female pregnancy // inferred from expression pattern /// 0070887 // cellular response to chemical stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0031527 // filopodium membrane // inferred from direct assay /// 0032279 // asymmetric synapse // inferred from direct assay /// 0032590 // dendrite membrane // inferred from direct assay /// 0032591 // dendritic spine membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0001664 // G-protein-coupled receptor binding // inferred from physical interaction /// 0003779 // actin binding // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0008179 // adenylate cyclase binding // inferred from electronic annotation /// 0008179 // adenylate cyclase binding // not recorded /// 0019901 // protein kinase binding // inferred from direct assay /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from direct assay /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030346 // protein phosphatase 2B binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from physical interaction /// 0034237 // protein kinase A regulatory subunit binding // inferred from direct assay /// 0045296 // cadherin binding // inferred from physical interaction /// 0050811 // GABA receptor binding // inferred from direct assay 1387494_at NM_133412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133412.1 /DB_XREF=gi:19173775 /GEN=Tst1 /FEA=FLmRNA /CNT=3 /TID=Rn.27679.1 /TIER=FL /STK=2 /UG=Rn.27679 /LL=170925 /DEF=Rattus norvegicus testis-specific transporter TST1 (Tst1), mRNA. /PROD=testis-specific transporter TST1 /FL=gb:NM_133412.1 gb:AF321415.1 NM_133412 solute carrier organic anion transporter family, member 6b1 Slco6b1 170925 NM_133412 0006810 // transport // traceable author statement /// 0006810 // transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement 0005215 // transporter activity // traceable author statement /// 0005215 // transporter activity // inferred from electronic annotation 1387495_at NM_019141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019141.1 /DB_XREF=gi:9507190 /GEN=Tle4 /FEA=FLmRNA /CNT=3 /TID=Rn.53972.1 /TIER=FL /STK=2 /UG=Rn.53972 /LL=25565 /DEF=Rattus norvegicus Transducin-like enhancer of split 4, homolog of Drosophila E(spl) (Tle4), mRNA. /PROD=transducin-like enhancer of split 4, homolog ofDrosophila E(spl) /FL=gb:L14463.1 gb:NM_019141.1 NM_019141 transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) Tle4 25565 NM_019141 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003682 // chromatin binding // not recorded /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0003714 // transcription corepressor activity // non-traceable author statement /// 0005515 // protein binding // not recorded 1387496_a_at AJ272429 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ272429.1 /DB_XREF=gi:10241816 /FEA=mRNA /CNT=1 /TID=Rn.10886.2 /TIER=ConsEnd /STK=0 /UG=Rn.10886 /LL=85257 /UG_GENE=Cnga3 /DEF=Rattus norvegicus mRNA for cyclic nucleotide-gated channel 2a, splice variant. /PROD=cyclic nucleotide-gated channel 2a AJ272429 cyclic nucleotide gated channel alpha 3 Cnga3 85257 NM_053495 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0031960 // response to corticosteroid stimulus // inferred from expression pattern /// 0032026 // response to magnesium ion // inferred from direct assay /// 0034220 // ion transmembrane transport // not recorded /// 0051591 // response to cAMP // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0001750 // photoreceptor outer segment // not recorded /// 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // non-traceable author statement /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005221 // intracellular cyclic nucleotide activated cation channel activity // inferred from direct assay /// 0005221 // intracellular cyclic nucleotide activated cation channel activity // not recorded /// 0005221 // intracellular cyclic nucleotide activated cation channel activity // inferred from electronic annotation /// 0005223 // intracellular cGMP activated cation channel activity // non-traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030553 // cGMP binding // non-traceable author statement 1387497_at NM_012869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012869.1 /DB_XREF=gi:6981283 /GEN=Npy5r /FEA=FLmRNA /CNT=3 /TID=Rn.10532.1 /TIER=FL /STK=2 /UG=Rn.10532 /LL=25340 /DEF=Rattus norvegicus Neuropeptide Y5 receptor (Npy5r), mRNA. /PROD=neuropeptide Y5 receptor /FL=gb:NM_012869.1 gb:U56078.1 gb:U66274.1 NM_012869 neuropeptide Y receptor Y5 Npy5r 25340 NM_012869 0002675 // positive regulation of acute inflammatory response // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0014050 // negative regulation of glutamate secretion // inferred from mutant phenotype /// 0032229 // negative regulation of synaptic transmission, GABAergic // inferred from mutant phenotype /// 0042755 // eating behavior // inferred from mutant phenotype /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0060112 // generation of ovulation cycle rhythm // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001601 // peptide YY receptor activity // inferred from direct assay /// 0001601 // peptide YY receptor activity // not recorded /// 0001601 // peptide YY receptor activity // inferred from electronic annotation /// 0001602 // pancreatic polypeptide receptor activity // inferred from direct assay /// 0001602 // pancreatic polypeptide receptor activity // not recorded /// 0001602 // pancreatic polypeptide receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004983 // neuropeptide Y receptor activity // inferred from direct assay /// 0004983 // neuropeptide Y receptor activity // not recorded /// 0004983 // neuropeptide Y receptor activity // inferred from electronic annotation 1387498_a_at S54008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:S54008.1 /DB_XREF=gi:264804 /GEN=fibroblast growth factor receptor 1 beta-isoform,FGFR-1 beta /FEA=mRNA /CNT=1 /TID=Rn.9797.2 /TIER=ConsEnd /STK=0 /UG=Rn.9797 /LL=79114 /DEF=fibroblast growth factor receptor 1 beta-isoform (Rattus norvegicus=Norway rat, Sprague-Dawley, kidneys, mRNA, 2520 nt). /PROD=fibroblast growth factor receptor 1beta-isoform S54008 Fibroblast growth factor receptor 1 Fgfr1 79114 NM_024146 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001759 // organ induction // inferred from electronic annotation /// 0001759 // organ induction // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from mutant phenotype /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0007435 // salivary gland morphogenesis // not recorded /// 0007435 // salivary gland morphogenesis // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from physical interaction /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0010629 // negative regulation of gene expression // not recorded /// 0010976 // positive regulation of neuron projection development // inferred from direct assay /// 0016310 // phosphorylation // not recorded /// 0019827 // stem cell maintenance // inferred from mutant phenotype /// 0021837 // motogenic signaling involved in postnatal olfactory bulb interneuron migration // inferred from mutant phenotype /// 0021954 // central nervous system neuron development // inferred from mutant phenotype /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030901 // midbrain development // inferred from electronic annotation /// 0030901 // midbrain development // not recorded /// 0031175 // neuron projection development // inferred from direct assay /// 0042127 // regulation of cell proliferation // inferred from direct assay /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045668 // negative regulation of osteoblast differentiation // inferred from mutant phenotype /// 0048339 // paraxial mesoderm development // inferred from electronic annotation /// 0048339 // paraxial mesoderm development // not recorded /// 0048378 // regulation of lateral mesodermal cell fate specification // inferred from electronic annotation /// 0048378 // regulation of lateral mesodermal cell fate specification // not recorded /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded /// 0048514 // blood vessel morphogenesis // not recorded /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048699 // generation of neurons // inferred from electronic annotation /// 0048699 // generation of neurons // not recorded /// 0048762 // mesenchymal cell differentiation // inferred from electronic annotation /// 0048762 // mesenchymal cell differentiation // not recorded /// 0051930 // regulation of sensory perception of pain // inferred from mutant phenotype /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060045 // positive regulation of cardiac muscle cell proliferation // not recorded /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // not recorded /// 0060484 // lung-associated mesenchyme development // inferred from electronic annotation /// 0060484 // lung-associated mesenchyme development // not recorded /// 0060665 // regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling // inferred from electronic annotation /// 0060665 // regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling // not recorded /// 0072091 // regulation of stem cell proliferation // inferred from mutant phenotype /// 0090080 // positive regulation of MAPKKK cascade by fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0090080 // positive regulation of MAPKKK cascade by fibroblast growth factor receptor signaling pathway // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005007 // fibroblast growth factor receptor activity // inferred from electronic annotation /// 0005007 // fibroblast growth factor receptor activity // not recorded /// 0005007 // fibroblast growth factor receptor activity // traceable author statement /// 0005007 // fibroblast growth factor receptor activity // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction /// 0050839 // cell adhesion molecule binding // inferred from physical interaction 1387499_a_at NM_022247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022247.1 /DB_XREF=gi:11560049 /GEN=Pdcl /FEA=FLmRNA /CNT=3 /TID=Rn.51153.1 /TIER=FL /STK=2 /UG=Rn.51153 /LL=64013 /DEF=Rattus norvegicus phosducin-like protein (Pdcl), mRNA. /PROD=phosducin-like protein /FL=gb:NM_022247.1 gb:L15354.1 NM_022247 phosducin-like Pdcl 64013 NM_022247 0006457 // protein folding // inferred from direct assay /// 0007601 // visual perception // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0061084 // negative regulation of protein refolding // inferred from direct assay 0032403 // protein complex binding // inferred from direct assay 1387500_at NM_022927 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022927.1 /DB_XREF=gi:12621081 /GEN=Mid1 /FEA=FLmRNA /CNT=3 /TID=Rn.48730.1 /TIER=FL /STK=2 /UG=Rn.48730 /LL=54252 /DEF=Rattus norvegicus midline 1 (Mid1), mRNA. /PROD=midline 1 /FL=gb:NM_022927.1 gb:AF186461.1 NM_022927 midline 1 Mid1 54252 NM_022927 0007026 // negative regulation of microtubule depolymerization // inferred from electronic annotation /// 0007026 // negative regulation of microtubule depolymerization // not recorded /// 0032874 // positive regulation of stress-activated MAPK cascade // inferred from electronic annotation /// 0032874 // positive regulation of stress-activated MAPK cascade // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // not recorded /// 0015630 // microtubule cytoskeleton // not recorded /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1387501_at NM_021695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021695.1 /DB_XREF=gi:11067428 /GEN=Synpo /FEA=FLmRNA /CNT=3 /TID=Rn.42910.1 /TIER=FL /STK=2 /UG=Rn.42910 /LL=60324 /DEF=Rattus norvegicus synaptopodin (Synpo), mRNA. /PROD=synaptopodin /FL=gb:NM_021695.1 gb:AB013130.1 NM_021695 synaptopodin Synpo 60324 NM_021695 0032233 // positive regulation of actin filament bundle assembly // not recorded /// 0051492 // regulation of stress fiber assembly // not recorded 0001725 // stress fiber // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0015629 // actin cytoskeleton // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043204 // perikaryon // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0003779 // actin binding // not recorded /// 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387502_at NM_133392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133392.1 /DB_XREF=gi:19173745 /GEN=Stk17b /FEA=FLmRNA /CNT=3 /TID=Rn.61638.1 /TIER=FL /STK=2 /UG=Rn.61638 /DEF=Rattus norvegicus serinethreonine kinase 17b (apoptosis-inducing) (Stk17b), mRNA. /PROD=serinethreonine kinase 17b(apoptosis-inducing) /FL=gb:AB070349.1 gb:NM_133392.1 NM_133392 serine/threonine kinase 17b Stk17b 170904 NM_133392 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from mutant phenotype /// 0006917 // induction of apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from sequence or structural similarity /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from direct assay /// 0007243 // intracellular protein kinase cascade // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from sequence or structural similarity /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0012501 // programmed cell death // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from mutant phenotype 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387503_at NM_053526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053526.1 /DB_XREF=gi:16758271 /GEN=Cpn1 /FEA=FLmRNA /CNT=3 /TID=Rn.41757.1 /TIER=FL /STK=2 /UG=Rn.41757 /LL=85433 /DEF=Rattus norvegicus carboxypeptidase N, polypeptide 1, 50kD (Cpn1), mRNA. /PROD=carboxypeptidase N /FL=gb:AB042599.1 gb:NM_053526.1 NM_053526 carboxypeptidase N, polypeptide 1 Cpn1 365466 NM_053526 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation 0004180 // carboxypeptidase activity // inferred from direct assay /// 0004180 // carboxypeptidase activity // not recorded /// 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387504_at NM_133575 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133575.1 /DB_XREF=gi:19424265 /GEN=Il1rl2 /FEA=FLmRNA /CNT=3 /TID=Rn.10235.1 /TIER=FL /STK=2 /UG=Rn.10235 /LL=171106 /DEF=Rattus norvegicus interleukin 1 receptor-like 2 (Il1rl2), mRNA. /PROD=interleukin 1 receptor-like 2 /FL=gb:NM_133575.1 gb:U49066.1 NM_133575 interleukin 1 receptor-like 2 Il1rl2 171106 NM_133575 0007165 // signal transduction // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031224 // intrinsic to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004908 // interleukin-1 receptor activity // inferred from electronic annotation 1387505_at NM_013145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013145.1 /DB_XREF=gi:6980961 /GEN=Gnai1 /FEA=FLmRNA /CNT=3 /TID=Rn.11391.1 /TIER=FL /STK=2 /UG=Rn.11391 /LL=25686 /DEF=Rattus norvegicus Guanine nucleotide binding protein, alpha inhibiting 1 (Gnai1), mRNA. /PROD=guanine nucleotide binding protein, alphainhibiting 1 /FL=gb:M17527.1 gb:NM_013145.1 NM_013145 guanine nucleotide binding protein (G protein), alpha inhibiting 1 Gnai1 25686 NM_013145 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0050805 // negative regulation of synaptic transmission // inferred from mutant phenotype 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005834 // heterotrimeric G-protein complex // traceable author statement /// 0005886 // plasma membrane // not recorded /// 0045121 // membrane raft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031821 // metabotropic serotonin receptor binding // inferred from physical interaction 1387506_at NM_017077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017077.1 /DB_XREF=gi:8393540 /GEN=Hnf3g /FEA=FLmRNA /CNT=3 /TID=Rn.10949.1 /TIER=FL /STK=2 /UG=Rn.10949 /LL=25100 /DEF=Rattus norvegicus Hepatocyte nuclear factor 3 gamma (Hnf3g), mRNA. /PROD=hepatocyte nuclear factor 3 gamma /FL=gb:L09648.1 gb:NM_017077.1 NM_017077 forkhead box A3 Foxa3 25100 NM_017077 0001678 // cellular glucose homeostasis // not recorded /// 0001678 // cellular glucose homeostasis // traceable author statement /// 0001678 // cellular glucose homeostasis // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006359 // regulation of transcription from RNA polymerase III promoter // not recorded /// 0006359 // regulation of transcription from RNA polymerase III promoter // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0009267 // cellular response to starvation // inferred from electronic annotation /// 0009267 // cellular response to starvation // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045945 // positive regulation of transcription from RNA polymerase III promoter // inferred from electronic annotation /// 0045945 // positive regulation of transcription from RNA polymerase III promoter // not recorded /// 0070368 // positive regulation of hepatocyte differentiation // inferred from mutant phenotype 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0044428 // nuclear part // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1387507_at NM_012968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012968.1 /DB_XREF=gi:6981095 /GEN=Il1rap /FEA=FLmRNA /CNT=3 /TID=Rn.10511.1 /TIER=FL /STK=2 /UG=Rn.10511 /LL=25466 /DEF=Rattus norvegicus Interleukin 1 receptor accessory protein (Il1rap), mRNA. /PROD=interleukin 1 receptor accessory protein /FL=gb:NM_012968.1 gb:U48592.1 NM_012968 interleukin 1 receptor accessory protein Il1rap 25466 NM_001167840 /// NM_012968 0007165 // signal transduction // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0042094 // interleukin-2 biosynthetic process // not recorded /// 0042094 // interleukin-2 biosynthetic process // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031224 // intrinsic to membrane // inferred from electronic annotation 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004908 // interleukin-1 receptor activity // inferred from electronic annotation /// 0004908 // interleukin-1 receptor activity // not recorded /// 0005149 // interleukin-1 receptor binding // traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019966 // interleukin-1 binding // traceable author statement /// 0030674 // protein binding, bridging // traceable author statement 1387508_at NM_017300 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017300.1 /DB_XREF=gi:8392961 /GEN=Baat /FEA=FLmRNA /CNT=3 /TID=Rn.11129.1 /TIER=FL /STK=2 /UG=Rn.11129 /LL=29725 /DEF=Rattus norvegicus bile acid-Coenzyme A dehydrogenase: amino acid n-acyltransferase (Baat), mRNA. /PROD=bile acid-Coenzyme A dehydrogenase: amino acidn-acyltransferase /FL=gb:D43964.1 gb:NM_017300.1 NM_017300 bile acid Coenzyme A: amino acid N-acyltransferase (glycine N-choloyltransferase) Baat 29725 NM_017300 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006637 // acyl-CoA metabolic process // inferred from electronic annotation /// 0006953 // acute-phase response // inferred by curator /// 0008206 // bile acid metabolic process // inferred from electronic annotation /// 0008206 // bile acid metabolic process // not recorded 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation /// 0005782 // peroxisomal matrix // not recorded 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016290 // palmitoyl-CoA hydrolase activity // inferred from electronic annotation /// 0016410 // N-acyltransferase activity // inferred from electronic annotation /// 0016410 // N-acyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016790 // thiolester hydrolase activity // inferred from electronic annotation /// 0047963 // glycine N-choloyltransferase activity // inferred from electronic annotation 1387509_at NM_017210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017210.1 /DB_XREF=gi:8393255 /GEN=Dio3 /FEA=FLmRNA /CNT=3 /TID=Rn.11237.1 /TIER=FL /STK=2 /UG=Rn.11237 /LL=29475 /DEF=Rattus norvegicus deiodinase, iodothyronine type III (Dio3), mRNA. /PROD=deiodinase, iodothyronine type III /FL=gb:NM_017210.1 gb:U24282.1 NM_017210 deiodinase, iodothyronine, type III Dio3 29475 NM_017210 0001666 // response to hypoxia // inferred from expression pattern /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0042403 // thyroid hormone metabolic process // traceable author statement /// 0042404 // thyroid hormone catabolic process // not recorded /// 0042446 // hormone biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0070342 // brown fat cell proliferation // inferred from expression pattern 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004800 // thyroxine 5'-deiodinase activity // not recorded /// 0004800 // thyroxine 5'-deiodinase activity // traceable author statement /// 0004800 // thyroxine 5'-deiodinase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0033798 // thyroxine 5-deiodinase activity // inferred from electronic annotation 1387510_at NM_022289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022289.1 /DB_XREF=gi:11560120 /GEN=Snx16 /FEA=FLmRNA /CNT=3 /TID=Rn.64585.1 /TIER=FL /STK=2 /UG=Rn.64585 /LL=64088 /DEF=Rattus norvegicus sorting nexin 16 (Snx16), mRNA. /PROD=sorting nexin 16 /FL=gb:NM_022289.1 gb:AF305780.1 NM_022289 sorting nexin 16 Snx16 64088 NM_022289 0006810 // transport // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0045022 // early endosome to late endosome transport // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1387511_at NM_012692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012692.1 /DB_XREF=gi:6978738 /GEN=Cyp2a1 /FEA=FLmRNA /CNT=3 /TID=Rn.32107.1 /TIER=FL /STK=2 /UG=Rn.32107 /LL=24894 /DEF=Rattus norvegicus Cytochrome P450 IIA1 (hepatic steroid hydroxylase IIA1) gene (Cyp2a1), mRNA. /PROD=cytochrome P450 IIA1 (hepatic steroidhydroxylase IIA1) gene /FL=gb:NM_012692.1 gb:J02669.1 NM_012692 cytochrome P450, family 2, subfamily a, polypeptide 1 Cyp2a1 24894 NM_012692 0009804 // coumarin metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008395 // steroid hydroxylase activity // inferred from direct assay /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1387512_at NM_022678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022678.1 /DB_XREF=gi:12083618 /GEN=Rp58 /FEA=FLmRNA /CNT=3 /TID=Rn.48771.1 /TIER=FL /STK=2 /UG=Rn.48771 /LL=64619 /DEF=Rattus norvegicus RP58 protein (Rp58), mRNA. /PROD=RP58 protein /FL=gb:NM_022678.1 gb:AF221838.1 NM_022678 zinc finger protein 238 Zfp238 64619 NM_022678 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0007519 // skeletal muscle tissue development // inferred from sequence or structural similarity /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387513_at NM_053912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053912.1 /DB_XREF=gi:16758793 /GEN=Pscd3 /FEA=FLmRNA /CNT=3 /TID=Rn.10673.1 /TIER=FL /STK=2 /UG=Rn.10673 /LL=116693 /DEF=Rattus norvegicus pleckstrin homology, Sec7 and coiledcoil domains 3 (Pscd3), mRNA. /PROD=pleckstrin homology, Sec7 and coiledcoildomains 3 /FL=gb:U83897.1 gb:NM_053912.1 NM_053912 cytohesin 3 Cyth3 116693 NM_053912 0032012 // regulation of ARF protein signal transduction // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // not recorded 0001726 // ruffle // inferred from electronic annotation /// 0001726 // ruffle // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005086 // ARF guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from electronic annotation /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // not recorded 1387514_at NM_133535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133535.1 /DB_XREF=gi:19424191 /GEN=LOC171057 /FEA=FLmRNA /CNT=3 /TID=Rn.67083.1 /TIER=FL /STK=2 /UG=Rn.67083 /LL=171057 /DEF=Rattus norvegicus dopamine responsive protein (LOC171057), mRNA. /PROD=dopamine responsive protein /FL=gb:AF353305.1 gb:NM_133535.1 NM_133535 COBW domain containing 1 Cbwd1 171057 NM_133535 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1387515_at NM_012799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012799.1 /DB_XREF=gi:6981273 /GEN=Nmbr /FEA=FLmRNA /CNT=3 /TID=Rn.10129.1 /TIER=FL /STK=2 /UG=Rn.10129 /LL=25264 /DEF=Rattus norvegicus Neuromedin B receptor (Nmbr), mRNA. /PROD=neuromedin B receptor /FL=gb:U37058.1 gb:NM_012799.1 NM_012799 neuromedin B receptor /// neuromedin B receptor LOC100361806 /// Nmbr 100361806 /// 25264 NM_012799 /// XM_002728633 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004946 // bombesin receptor activity // inferred from electronic annotation /// 0008188 // neuropeptide receptor activity // inferred from physical interaction 1387516_at NM_057206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057206.1 /DB_XREF=gi:17105373 /GEN=Pnliprp2 /FEA=FLmRNA /CNT=3 /TID=Rn.21403.1 /TIER=FL /STK=2 /UG=Rn.21403 /LL=117554 /DEF=Rattus norvegicus pancreatic lipase-related protein 2 (Pnliprp2), mRNA. /PROD=pancreatic lipase-related protein 2 /FL=gb:NM_057206.1 gb:L09216.1 NM_057206 pancreatic lipase-related protein 2 Pnliprp2 117554 NM_057206 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006968 // cellular defense response // not recorded /// 0007586 // digestion // not recorded /// 0009395 // phospholipid catabolic process // inferred from sequence or structural similarity /// 0009791 // post-embryonic development // inferred from expression pattern /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0019376 // galactolipid catabolic process // inferred from direct assay /// 0032094 // response to food // inferred from expression pattern /// 0033993 // response to lipid // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0042589 // zymogen granule membrane // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004620 // phospholipase activity // inferred from direct assay /// 0004806 // triglyceride lipase activity // inferred from direct assay /// 0004806 // triglyceride lipase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0016298 // lipase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047372 // acylglycerol lipase activity // not recorded /// 0047372 // acylglycerol lipase activity // inferred from sequence or structural similarity /// 0047714 // galactolipase activity // inferred from direct assay 1387517_at NM_030839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030839.1 /DB_XREF=gi:13540643 /GEN=Syt13 /FEA=FLmRNA /CNT=3 /TID=Rn.21031.1 /TIER=FL /STK=2 /UG=Rn.21031 /LL=80977 /DEF=Rattus norvegicus synaptotagmin 13 (Syt13), mRNA. /PROD=synaptotagmin 13 /FL=gb:NM_030839.1 gb:AF375466.1 gb:AF313453.1 NM_030839 synaptotagmin XIII Syt13 80977 NM_030839 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // not recorded 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from electronic annotation /// 0030133 // transport vesicle // not recorded 1387518_at NM_031240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031240.1 /DB_XREF=gi:13676848 /GEN=Tpx1 /FEA=FLmRNA /CNT=3 /TID=Rn.32098.1 /TIER=FL /STK=2 /UG=Rn.32098 /LL=81923 /DEF=Rattus norvegicus testis specific protein 1 (Tpx1), mRNA. /PROD=testis specific protein 1 /FL=gb:NM_031240.1 gb:AF078552.1 gb:AB009662.1 NM_031240 cysteine-rich secretory protein 2 Crisp2 360445 NM_001011710 0007283 // spermatogenesis // traceable author statement /// 0016337 // cell-cell adhesion // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation 1387519_at NM_013090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013090.1 /DB_XREF=gi:6981611 /GEN=Vamp1 /FEA=FLmRNA /CNT=3 /TID=Rn.37516.1 /TIER=FL /STK=2 /UG=Rn.37516 /LL=25624 /DEF=Rattus norvegicus Synaptobrevin 1 (Vamp1), mRNA. /PROD=synaptobrevin 1 /FL=gb:U74621.1 gb:NM_013090.1 NM_013090 vesicle-associated membrane protein 1 Vamp1 25624 NM_013090 0006886 // intracellular protein transport // traceable author statement /// 0016192 // vesicle-mediated transport // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // not recorded 1387520_at NM_012944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012944.1 /DB_XREF=gi:6978778 /GEN=Drd4 /FEA=FLmRNA /CNT=3 /TID=Rn.10159.1 /TIER=FL /STK=2 /UG=Rn.10159 /LL=25432 /DEF=Rattus norvegicus Dopamine receptor D4 (Drd4), mRNA. /PROD=dopamine receptor D4 /FL=gb:NM_012944.1 gb:M84009.1 NM_012944 dopamine receptor D4 Drd4 25432 NM_012944 0000187 // activation of MAPK activity // not recorded /// 0001662 // behavioral fear response // inferred from mutant phenotype /// 0001963 // synaptic transmission, dopaminergic // inferred from direct assay /// 0001963 // synaptic transmission, dopaminergic // inferred from mutant phenotype /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0001975 // response to amphetamine // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007194 // negative regulation of adenylate cyclase activity // not recorded /// 0007195 // inhibition of adenylate cyclase activity by dopamine receptor signaling pathway // inferred from electronic annotation /// 0007195 // inhibition of adenylate cyclase activity by dopamine receptor signaling pathway // not recorded /// 0007212 // dopamine receptor signaling pathway // inferred from direct assay /// 0007212 // dopamine receptor signaling pathway // not recorded /// 0007614 // short-term memory // inferred from mutant phenotype /// 0007626 // locomotory behavior // traceable author statement /// 0008306 // associative learning // inferred from mutant phenotype /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0008355 // olfactory learning // inferred from mutant phenotype /// 0030818 // negative regulation of cAMP biosynthetic process // not recorded /// 0032417 // positive regulation of sodium:hydrogen antiporter activity // not recorded /// 0033674 // positive regulation of kinase activity // not recorded /// 0034776 // response to histamine // not recorded /// 0042053 // regulation of dopamine metabolic process // inferred from electronic annotation /// 0042053 // regulation of dopamine metabolic process // not recorded /// 0042596 // fear response // not recorded /// 0042596 // fear response // inferred from electronic annotation /// 0046928 // regulation of neurotransmitter secretion // inferred from mutant phenotype /// 0048148 // behavioral response to cocaine // inferred from electronic annotation /// 0048148 // behavioral response to cocaine // not recorded /// 0050482 // arachidonic acid secretion // not recorded /// 0050709 // negative regulation of protein secretion // not recorded /// 0050804 // regulation of synaptic transmission // inferred from direct assay /// 0050848 // regulation of calcium-mediated signaling // inferred from mutant phenotype /// 0051927 // negative regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0060080 // regulation of inhibitory postsynaptic membrane potential // inferred from electronic annotation /// 0060080 // regulation of inhibitory postsynaptic membrane potential // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // non-traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005938 // cell cortex // inferred from direct assay /// 0012506 // vesicle membrane // inferred from direct assay /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0001591 // dopamine receptor activity, coupled via Gi/Go // not recorded /// 0001593 // dopamine D4 receptor activity // inferred from direct assay /// 0001593 // dopamine D4 receptor activity // not recorded /// 0001593 // dopamine D4 receptor activity // traceable author statement /// 0001593 // dopamine D4 receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004952 // dopamine receptor activity // inferred from electronic annotation /// 0004952 // dopamine receptor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008144 // drug binding // inferred from direct assay /// 0008144 // drug binding // not recorded /// 0017124 // SH3 domain binding // not recorded /// 0035240 // dopamine binding // inferred from direct assay /// 0035240 // dopamine binding // not recorded 1387521_at NM_022265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022265.1 /DB_XREF=gi:11560082 /GEN=Pdcd4 /FEA=FLmRNA /CNT=3 /TID=Rn.54042.1 /TIER=FL /STK=2 /UG=Rn.54042 /LL=64031 /DEF=Rattus norvegicus programmed cell death 4 (Pdcd4), mRNA. /PROD=programmed cell death 4 /FL=gb:NM_022265.1 gb:AF239739.1 NM_022265 programmed cell death 4 Pdcd4 64031 NM_022265 0006915 // apoptosis // inferred from electronic annotation /// 0007569 // cell aging // not recorded /// 0007569 // cell aging // inferred from sequence or structural similarity /// 0007569 // cell aging // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0043508 // negative regulation of JUN kinase activity // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387522_at NM_023022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023022.1 /DB_XREF=gi:12711689 /GEN=Rhag /FEA=FLmRNA /CNT=3 /TID=Rn.44480.1 /TIER=FL /STK=2 /UG=Rn.44480 /LL=65207 /DEF=Rattus norvegicus Rhesus blood group-associated A glycoprotein (Rhag), mRNA. /PROD=glycoprotein 50kD /FL=gb:AB015194.1 gb:NM_023022.1 NM_023022 Rh-associated glycoprotein Rhag 65207 NM_023022 0006810 // transport // inferred from electronic annotation /// 0006873 // cellular ion homeostasis // not recorded /// 0006873 // cellular ion homeostasis // inferred from sequence or structural similarity /// 0015670 // carbon dioxide transport // not recorded /// 0015696 // ammonium transport // not recorded /// 0015696 // ammonium transport // inferred from sequence or structural similarity /// 0015696 // ammonium transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008519 // ammonium transmembrane transporter activity // inferred from electronic annotation /// 0008519 // ammonium transmembrane transporter activity // not recorded /// 0008519 // ammonium transmembrane transporter activity // inferred from sequence or structural similarity /// 0030506 // ankyrin binding // not recorded /// 0051739 // ammonia transmembrane transporter activity // not recorded /// 0051739 // ammonia transmembrane transporter activity // inferred from sequence or structural similarity 1387523_at NM_022241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022241.1 /DB_XREF=gi:11560039 /GEN=Ptgdr2 /FEA=FLmRNA /CNT=3 /TID=Rn.48685.1 /TIER=FL /STK=2 /UG=Rn.48685 /LL=63889 /DEF=Rattus norvegicus prostaglandin D2 receptor (Ptgdr2), mRNA. /PROD=prostaglandin D2 receptor /FL=gb:NM_022241.1 gb:AF120101.1 gb:U92289.1 NM_022241 prostaglandin D receptor /// prostaglandin D receptor-like Ptgdr /// Ptgdrl 498475 /// 63889 NM_001135164 /// NM_022241 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0030238 // male sex determination // not recorded /// 0045909 // positive regulation of vasodilation // inferred from mutant phenotype /// 0051480 // cytosolic calcium ion homeostasis // inferred from mutant phenotype /// 0060406 // positive regulation of penile erection // inferred from direct assay 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001785 // prostaglandin J receptor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004955 // prostaglandin receptor activity // traceable author statement /// 0004956 // prostaglandin D receptor activity // inferred from direct assay /// 0004956 // prostaglandin D receptor activity // not recorded /// 0004956 // prostaglandin D receptor activity // inferred from electronic annotation 1387524_at NM_133413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133413.1 /DB_XREF=gi:19173777 /GEN=Cyslt2 /FEA=FLmRNA /CNT=3 /TID=Rn.74252.1 /TIER=FL /STK=2 /UG=Rn.74252 /LL=170926 /DEF=Rattus norvegicus cysteinyl leukotriene CysLT2 receptor (Cyslt2), mRNA. /PROD=cysteinyl leukotriene CysLT2 receptor /FL=gb:AB052661.1 gb:NM_133413.1 NM_133413 cysteinyl leukotriene receptor 2 Cysltr2 170926 NM_133413 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001631 // cysteinyl leukotriene receptor activity // inferred from electronic annotation /// 0001631 // cysteinyl leukotriene receptor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004974 // leukotriene receptor activity // inferred from electronic annotation 1387525_at NM_021680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021680.1 /DB_XREF=gi:11067404 /GEN=Nph4 /FEA=FLmRNA /CNT=3 /TID=Rn.42882.1 /TIER=FL /STK=2 /UG=Rn.42882 /LL=59316 /DEF=Rattus norvegicus neurexophilin 4 (Nph4), mRNA. /PROD=neurexophilin 4 /FL=gb:NM_021680.1 gb:AF042714.1 NM_021680 neurexophilin 4 Nxph4 59316 NM_021680 0005576 // extracellular region // inferred from electronic annotation 1387526_at NM_023099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023099.1 /DB_XREF=gi:12831216 /GEN=Gpr27 /FEA=FLmRNA /CNT=3 /TID=Rn.54454.1 /TIER=FL /STK=2 /UG=Rn.54454 /LL=65275 /DEF=Rattus norvegicus G protein-coupled receptor 27 (Gpr27), mRNA. /PROD=G protein-coupled receptor 27 /FL=gb:AB040802.1 gb:NM_023099.1 NM_023099 G protein-coupled receptor 27 Gpr27 65275 NM_023099 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1387527_at NM_019166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019166.1 /DB_XREF=gi:9507166 /GEN=Syngr1 /FEA=FLmRNA /CNT=3 /TID=Rn.47203.1 /TIER=FL /STK=2 /UG=Rn.47203 /LL=29205 /DEF=Rattus norvegicus synaptogyrin 1 (Syngr1), mRNA. /PROD=synaptogyrin 1 /FL=gb:U39549.1 gb:NM_019166.1 NM_019166 synaptogyrin 1 Syngr1 29205 NM_019166 0006605 // protein targeting // inferred from direct assay /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // not recorded /// 0048172 // regulation of short-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048172 // regulation of short-term neuronal synaptic plasticity // not recorded 0008021 // synaptic vesicle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 1387528_at NM_022704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022704.1 /DB_XREF=gi:12083668 /GEN=Mbl2 /FEA=FLmRNA /CNT=3 /TID=Rn.9667.1 /TIER=FL /STK=2 /UG=Rn.9667 /LL=64668 /DEF=Rattus norvegicus mannose-binding protein C (liver) (Mbl2), mRNA. /PROD=mannose-binding protein C (liver) /FL=gb:M14103.1 gb:NM_022704.1 NM_022704 mannose-binding lectin (protein C) 2 Mbl2 64668 NM_022704 0001867 // complement activation, lectin pathway // inferred from electronic annotation /// 0001867 // complement activation, lectin pathway // not recorded /// 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0044130 // negative regulation of growth of symbiont in host // inferred from electronic annotation /// 0044130 // negative regulation of growth of symbiont in host // not recorded /// 0045087 // innate immune response // inferred from electronic annotation /// 0050766 // positive regulation of phagocytosis // inferred from electronic annotation /// 0050766 // positive regulation of phagocytosis // not recorded /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // not recorded /// 0051873 // killing by host of symbiont cells // inferred from electronic annotation /// 0051873 // killing by host of symbiont cells // not recorded 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0005537 // mannose binding // inferred from direct assay /// 0005537 // mannose binding // inferred from electronic annotation /// 0043621 // protein self-association // inferred from direct assay /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded 1387529_a_at NM_031676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031676.1 /DB_XREF=gi:13928937 /GEN=Tagln3 /FEA=FLmRNA /CNT=3 /TID=Rn.10998.1 /TIER=FL /STK=2 /UG=Rn.10998 /LL=63837 /DEF=Rattus norvegicus transgelin 3 (Tagln3), mRNA. /PROD=transgelin 3 /FL=gb:NM_031676.1 gb:M84725.1 NM_031676 transgelin 3 Tagln3 63837 NM_001035236 /// NM_031676 0007517 // muscle organ development // inferred from electronic annotation 1387530_a_at NM_012954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012954.1 /DB_XREF=gi:6978852 /GEN=Fosl2 /FEA=FLmRNA /CNT=3 /TID=Rn.10962.1 /TIER=FL /STK=2 /UG=Rn.10962 /LL=25446 /DEF=Rattus norvegicus Fos like antigen 2 (Fosl2), mRNA. /PROD=fos like antigen 2 /FL=gb:NM_012954.1 gb:U18913.1 NM_012954 FBJ osteosarcoma oncogene B /// fos-like antigen 2 Fosb /// Fosl2 25446 /// 308411 NM_001013146 /// NM_012954 /// XM_001057199 /// XM_001075659 0001661 // conditioned taste aversion // inferred from expression pattern /// 0001666 // response to hypoxia // inferred from mutant phenotype /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006950 // response to stress // inferred from expression pattern /// 0007565 // female pregnancy // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0007623 // circadian rhythm // inferred from expression pattern /// 0009409 // response to cold // inferred from expression pattern /// 0009416 // response to light stimulus // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009636 // response to toxin // inferred from expression pattern /// 0009648 // photoperiodism // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030431 // sleep // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from mutant phenotype /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043278 // response to morphine // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045941 // positive regulation of transcription // inferred from direct assay /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // traceable author statement /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred by curator /// 0046983 // protein dimerization activity // inferred from electronic annotation 1387531_at NM_053307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053307.1 /DB_XREF=gi:16758003 /GEN=Msra /FEA=FLmRNA /CNT=3 /TID=Rn.74261.1 /TIER=FL /STK=2 /UG=Rn.74261 /LL=29447 /DEF=Rattus norvegicus methionine sulfoxide reductase A (Msra), mRNA. /PROD=methionine sulfoxide reductase A /FL=gb:NM_053307.1 gb:AY005464.1 NM_053307 methionine sulfoxide reductase A Msra 29447 NM_053307 0006464 // protein modification process // inferred from electronic annotation /// 0007568 // aging // inferred from direct assay /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0019538 // protein metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0008113 // peptide-methionine-(S)-S-oxide reductase activity // inferred from direct assay /// 0008113 // peptide-methionine-(S)-S-oxide reductase activity // inferred from electronic annotation /// 0008113 // peptide-methionine-(S)-S-oxide reductase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016671 // oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor // inferred from electronic annotation 1387532_at NM_130817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130817.1 /DB_XREF=gi:18677744 /GEN=Fgf3 /FEA=FLmRNA /CNT=3 /TID=Rn.81236.1 /TIER=FL /STK=2 /UG=Rn.81236 /DEF=Rattus norvegicus fibroblast growth factor 3 (Fgf3), mRNA. /PROD=fibroblast growth factor 3 /FL=gb:NM_130817.1 gb:AB079262.1 NM_130817 fibroblast growth factor 3 Fgf3 170633 NM_130817 0001759 // organ induction // inferred from electronic annotation /// 0001759 // organ induction // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0030916 // otic vesicle formation // not recorded /// 0035121 // tail morphogenesis // inferred from electronic annotation /// 0035121 // tail morphogenesis // not recorded /// 0048538 // thymus development // inferred from electronic annotation /// 0048538 // thymus development // not recorded /// 0048752 // semicircular canal morphogenesis // not recorded 0005576 // extracellular region // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation 1387533_at NM_013014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013014.1 /DB_XREF=gi:6981427 /GEN=Pspn /FEA=FLmRNA /CNT=3 /TID=Rn.44349.1 /TIER=FL /STK=2 /UG=Rn.44349 /LL=25525 /DEF=Rattus norvegicus Persephin (Pspn), mRNA. /PROD=persephin /FL=gb:NM_013014.1 gb:AF040961.1 NM_013014 persephin Pspn 25525 NM_013014 0001658 // branching involved in ureteric bud morphogenesis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0008083 // growth factor activity // inferred from electronic annotation 1387534_at NM_012840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012840.1 /DB_XREF=gi:6978726 /GEN=Cyct /FEA=FLmRNA /CNT=3 /TID=Rn.10889.1 /TIER=FL /STK=2 /UG=Rn.10889 /LL=25310 /DEF=Rattus norvegicus Cytochrome C, testis specific (Cyct), mRNA. /PROD=cytochrome C, testis specific /FL=gb:NM_012840.1 NM_012840 cytochrome c, testis Cyct 25310 NM_012840 0006198 // cAMP catabolic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0042743 // hydrogen peroxide metabolic process // not recorded /// 0046069 // cGMP catabolic process // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0043204 // perikaryon // inferred from direct assay /// 0070469 // respiratory chain // inferred from electronic annotation 0004112 // cyclic-nucleotide phosphodiesterase activity // inferred from direct assay /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0020037 // heme binding // not recorded /// 0030552 // cAMP binding // inferred from direct assay /// 0030553 // cGMP binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1387535_at NM_012767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012767.1 /DB_XREF=gi:6980967 /GEN=Gnrh1 /FEA=FLmRNA /CNT=3 /TID=Rn.32075.1 /TIER=FL /STK=2 /UG=Rn.32075 /LL=25194 /DEF=Rattus norvegicus Gonadotropin releasing hormone (Gnrh1), mRNA. /PROD=gonadotropin releasing hormone /FL=gb:NM_012767.1 gb:M12579.1 NM_012767 gonadotropin-releasing hormone 1 (luteinizing-releasing hormone) Gnrh1 25194 NM_012767 0006916 // anti-apoptosis // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007275 // multicellular organismal development // not recorded /// 0007565 // female pregnancy // inferred from expression pattern /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0030728 // ovulation // traceable author statement /// 0031960 // response to corticosteroid stimulus // inferred from expression pattern /// 0042698 // ovulation cycle // inferred from expression pattern /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045471 // response to ethanol // not recorded /// 0048545 // response to steroid hormone stimulus // not recorded /// 0048545 // response to steroid hormone stimulus // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay 0005179 // hormone activity // inferred from electronic annotation /// 0005183 // gonadotropin hormone-releasing hormone activity // inferred from electronic annotation 1387536_at NM_013125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013125.1 /DB_XREF=gi:6981513 /GEN=Scn5a /FEA=FLmRNA /CNT=2 /TID=Rn.32074.1 /TIER=FL /STK=2 /UG=Rn.32074 /LL=25665 /DEF=Rattus norvegicus Sodium channel, voltage-gated, type V, alpha polypeptide (Scn5a), mRNA. /PROD=sodium channel, voltage-gated, type V, alphapolypeptide /FL=gb:M27902.1 gb:NM_013125.1 NM_013125 sodium channel, voltage-gated, type V, alpha subunit Scn5a 25665 NM_001160162 /// NM_013125 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation 0001518 // voltage-gated sodium channel complex // inferred from electronic annotation /// 0001518 // voltage-gated sodium channel complex // traceable author statement /// 0005886 // plasma membrane // not recorded /// 0014704 // intercalated disc // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030315 // T-tubule // not recorded /// 0042383 // sarcolemma // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005248 // voltage-gated sodium channel activity // inferred from electronic annotation /// 0005248 // voltage-gated sodium channel activity // traceable author statement /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387537_at NM_022925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022925.1 /DB_XREF=gi:12621077 /GEN=Ptprq /FEA=FLmRNA /CNT=2 /TID=Rn.30011.1 /TIER=FL /STK=2 /UG=Rn.30011 /LL=29617 /DEF=Rattus norvegicus protein tyrosine phosphatase, receptor type, Q (Ptprq), mRNA. /PROD=protein tyrosine phosphatase, receptor type, Q /FL=gb:NM_022925.1 gb:AF063249.1 NM_022925 protein tyrosine phosphatase, receptor type, Q Ptprq 360417 NM_022925 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0045598 // regulation of fat cell differentiation // not recorded /// 0045598 // regulation of fat cell differentiation // inferred from sequence or structural similarity 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1387538_at NM_022193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022193.1 /DB_XREF=gi:11559961 /GEN=Acac /FEA=FLmRNA /CNT=2 /TID=Rn.44372.1 /TIER=FL /STK=2 /UG=Rn.44372 /LL=60581 /DEF=Rattus norvegicus acetyl-coenzyme A carboxylase (Acac), mRNA. /PROD=acetyl-coenzyme A carboxylase /FL=gb:NM_022193.1 gb:J03808.1 NM_022193 acetyl-coenzyme A carboxylase alpha Acaca 60581 NM_022193 0001894 // tissue homeostasis // inferred from electronic annotation /// 0001894 // tissue homeostasis // not recorded /// 0006084 // acetyl-CoA metabolic process // inferred from direct assay /// 0006629 // lipid metabolic process // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from direct assay /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0044268 // multicellular organismal protein metabolic process // inferred from electronic annotation /// 0044268 // multicellular organismal protein metabolic process // not recorded /// 0055088 // lipid homeostasis // inferred from electronic annotation /// 0055088 // lipid homeostasis // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003989 // acetyl-CoA carboxylase activity // inferred from direct assay /// 0003989 // acetyl-CoA carboxylase activity // inferred from electronic annotation /// 0003989 // acetyl-CoA carboxylase activity // inferred from mutant phenotype /// 0003989 // acetyl-CoA carboxylase activity // not recorded /// 0004075 // biotin carboxylase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0009374 // biotin binding // inferred from electronic annotation /// 0009374 // biotin binding // inferred from mutant phenotype /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387539_at NM_013061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013061.1 /DB_XREF=gi:6981535 /GEN=Si /FEA=FLmRNA /CNT=2 /TID=Rn.10057.1 /TIER=FL /STK=2 /UG=Rn.10057 /LL=25588 /DEF=Rattus norvegicus Sucrase-isomaltase (Si), mRNA. /PROD=sucrase-isomaltase /FL=gb:NM_013061.1 gb:L25926.1 NM_013061 sucrase-isomaltase (alpha-glucosidase) Si 497756 NM_013061 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0009744 // response to sucrose stimulus // inferred from expression pattern /// 0009750 // response to fructose stimulus // inferred from expression pattern /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0033189 // response to vitamin A // inferred from expression pattern /// 0042594 // response to starvation // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0005903 // brush border // inferred from direct assay /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004564 // beta-fructofuranosidase activity // inferred from direct assay /// 0004574 // oligo-1,6-glucosidase activity // inferred from direct assay /// 0004574 // oligo-1,6-glucosidase activity // inferred from electronic annotation /// 0004575 // sucrose alpha-glucosidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation 1387540_at NM_012514 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012514.1 /DB_XREF=gi:6978572 /GEN=Brca1 /FEA=FLmRNA /CNT=2 /TID=Rn.48840.1 /TIER=FL /STK=2 /UG=Rn.48840 /LL=24227 /DEF=Rattus norvegicus Breast cancer 1 (Brca1), mRNA. /PROD=breast cancer 1 /FL=gb:NM_012514.1 gb:AF036760.1 NM_012514 breast cancer 1 Brca1 497672 NM_012514 0000724 // double-strand break repair via homologous recombination // not recorded /// 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded /// 0006281 // DNA repair // traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006301 // postreplication repair // not recorded /// 0006302 // double-strand break repair // not recorded /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // not recorded /// 0007098 // centrosome cycle // inferred from electronic annotation /// 0007098 // centrosome cycle // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0008630 // DNA damage response, signal transduction resulting in induction of apoptosis // not recorded /// 0009048 // dosage compensation, by inactivation of X chromosome // inferred from electronic annotation /// 0009048 // dosage compensation, by inactivation of X chromosome // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0010212 // response to ionizing radiation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0031572 // G2/M transition DNA damage checkpoint // not recorded /// 0033993 // response to lipid // inferred from expression pattern /// 0043009 // chordate embryonic development // inferred from electronic annotation /// 0043009 // chordate embryonic development // not recorded /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0043627 // response to estrogen stimulus // not recorded /// 0045717 // negative regulation of fatty acid biosynthetic process // not recorded /// 0045717 // negative regulation of fatty acid biosynthetic process // inferred from sequence or structural similarity /// 0045739 // positive regulation of DNA repair // not recorded /// 0051865 // protein autoubiquitination // not recorded /// 0051865 // protein autoubiquitination // inferred from sequence or structural similarity /// 0071681 // cellular response to indole-3-methanol // not recorded /// 0085020 // protein K6-linked ubiquitination // not recorded /// 0085020 // protein K6-linked ubiquitination // inferred from sequence or structural similarity 0000793 // condensed chromosome // inferred from electronic annotation /// 0000793 // condensed chromosome // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0030529 // ribonucleoprotein complex // not recorded /// 0031436 // BRCA1-BARD1 complex // not recorded /// 0031436 // BRCA1-BARD1 complex // inferred from sequence or structural similarity /// 0043234 // protein complex // not recorded /// 0070531 // BRCA1-A complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // not recorded /// 0003684 // damaged DNA binding // traceable author statement /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1387541_at NM_031653 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031653.1 /DB_XREF=gi:13928903 /GEN=Cspg3 /FEA=FLmRNA /CNT=2 /TID=Rn.10177.1 /TIER=FL /STK=2 /UG=Rn.10177 /LL=58982 /DEF=Rattus norvegicus chondroitin sulfate proteoglycan 3 (Cspg3), mRNA. /PROD=chondroitin sulfate proteoglycan 3 /FL=gb:NM_031653.1 gb:M97161.1 NM_031653 neurocan Ncan 58982 NM_031653 0007155 // cell adhesion // inferred from electronic annotation /// 0051823 // regulation of synapse structural plasticity // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // inferred from electronic annotation 1387542_at NM_012654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012654.1 /DB_XREF=gi:6981561 /GEN=Slc9a3 /FEA=FLmRNA /CNT=2 /TID=Rn.9706.1 /TIER=FL /STK=2 /UG=Rn.9706 /LL=24784 /DEF=Rattus norvegicus Solute carrier family 9 (sodiumhydrogen exchanger 3), antiporter 3, Na+H+ (amiloride insensitive) (Slc9a3), mRNA. /PROD=solute carrier family 9 (sodiumhydrogenexchanger 3), antiporter 3, Na+H+ (amilorideinsensitive) /FL=gb:M85300.1 gb:NM_012654.1 NM_012654 solute carrier family 9 (sodium/hydrogen exchanger), member 3 Slc9a3 24784 NM_012654 0002028 // regulation of sodium ion transport // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // not recorded /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006885 // regulation of pH // inferred from direct assay /// 0006885 // regulation of pH // not recorded /// 0006885 // regulation of pH // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from mutant phenotype /// 0007623 // circadian rhythm // inferred from expression pattern /// 0015992 // proton transport // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0055085 // transmembrane transport // inferred from electronic annotation 0005903 // brush border // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0031526 // brush border membrane // inferred from mutant phenotype 0005515 // protein binding // inferred from physical interaction /// 0015297 // antiporter activity // inferred from electronic annotation /// 0015299 // solute:hydrogen antiporter activity // inferred from electronic annotation /// 0015385 // sodium:hydrogen antiporter activity // inferred from direct assay /// 0015385 // sodium:hydrogen antiporter activity // not recorded /// 0015385 // sodium:hydrogen antiporter activity // inferred from electronic annotation 1387543_at NM_053521 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053521.1 /DB_XREF=gi:16758283 /GEN=Slc5a7 /FEA=FLmRNA /CNT=2 /TID=Rn.44872.1 /TIER=FL /STK=2 /UG=Rn.44872 /LL=85426 /DEF=Rattus norvegicus solute carrier family 5 (choline transporter), member 7 (Slc5a7), mRNA. /PROD=solute carrier family 5 (choline transporter),member 7 /FL=gb:AB030947.1 gb:NM_053521.1 NM_053521 solute carrier family 5 (choline transporter), member 7 Slc5a7 85426 NM_053521 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0007271 // synaptic transmission, cholinergic // inferred from electronic annotation /// 0007271 // synaptic transmission, cholinergic // not recorded /// 0007274 // neuromuscular synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0008292 // acetylcholine biosynthetic process // inferred from mutant phenotype /// 0008292 // acetylcholine biosynthetic process // not recorded /// 0008292 // acetylcholine biosynthetic process // inferred from electronic annotation /// 0015871 // choline transport // not recorded /// 0015871 // choline transport // inferred from electronic annotation /// 0042136 // neurotransmitter biosynthetic process // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055085 // transmembrane transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005307 // choline:sodium symporter activity // inferred from electronic annotation /// 0005307 // choline:sodium symporter activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015220 // choline transmembrane transporter activity // inferred from mutant phenotype /// 0015220 // choline transmembrane transporter activity // not recorded /// 0015220 // choline transmembrane transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation 1387544_at NM_134399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134399.1 /DB_XREF=gi:19705520 /GEN=Mk1 /FEA=FLmRNA /CNT=2 /TID=Rn.42486.1 /TIER=FL /STK=2 /UG=Rn.42486 /DEF=Rattus norvegicus Mk1 protein (Mk1), mRNA. /PROD=Mk1 protein /FL=gb:AF456232.1 gb:NM_134399.1 NM_134399 Mk1 protein Mk1 171436 NM_134399 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation 0015629 // actin cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation 1387545_at NM_030864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030864.1 /DB_XREF=gi:13540690 /GEN=Mtr /FEA=FLmRNA /CNT=2 /TID=Rn.30063.1 /TIER=FL /STK=2 /UG=Rn.30063 /LL=81522 /DEF=Rattus norvegicus methionine synthase (Mtr), mRNA. /PROD=methionine synthase /FL=gb:NM_030864.1 gb:AF034214.1 NM_030864 5-methyltetrahydrofolate-homocysteine methyltransferase Mtr 81522 NM_030864 0006479 // protein methylation // inferred from direct assay /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009086 // methionine biosynthetic process // inferred from direct assay /// 0009086 // methionine biosynthetic process // not recorded /// 0009086 // methionine biosynthetic process // inferred from electronic annotation /// 0032259 // methylation // not recorded /// 0042558 // pteridine and derivative metabolic process // inferred from electronic annotation /// 0044237 // cellular metabolic process // inferred from electronic annotation /// 0046653 // tetrahydrofolate metabolic process // inferred from direct assay /// 0050667 // homocysteine metabolic process // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005542 // folic acid binding // inferred from direct assay /// 0008168 // methyltransferase activity // inferred from direct assay /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008705 // methionine synthase activity // inferred from direct assay /// 0008705 // methionine synthase activity // not recorded /// 0008705 // methionine synthase activity // inferred from electronic annotation /// 0008898 // homocysteine S-methyltransferase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0031419 // cobalamin binding // traceable author statement /// 0031419 // cobalamin binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387546_at NM_138916 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_138916.1 /DB_XREF=gi:20302120 /GEN=Pksc /FEA=FLmRNA /CNT=2 /TID=Affx.1.1 /TIER=FL /STK=2 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus protein kinase for splicing component (Pksc), mRNA. /PROD=protein kinase for splicing component /FL=gb:NM_138916.1 gb:AY072294.1 NM_138916 Cdc2-related kinase, arginine/serine-rich Crkrs 192350 NM_001033867 /// NM_138916 0006468 // protein phosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387547_a_at NM_022294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022294.1 /DB_XREF=gi:11560110 /GEN=Etl /FEA=FLmRNA /CNT=2 /TID=Rn.8731.1 /TIER=FL /STK=2 /UG=Rn.8731 /LL=64124 /DEF=Rattus norvegicus ETL protein (Etl), mRNA. /PROD=ETL protein /FL=gb:NM_022294.1 gb:AF192401.1 NM_022294 EGF, latrophilin and seven transmembrane domain containing 1 Eltd1 64124 NM_022294 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from direct assay 1387548_at NM_013153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013153.1 /DB_XREF=gi:6981007 /GEN=Has2 /FEA=FLmRNA /CNT=2 /TID=Rn.10781.1 /TIER=FL /STK=2 /UG=Rn.10781 /LL=25694 /DEF=Rattus norvegicus Hyaluronan synthase 2 (Has2), mRNA. /PROD=hyaluronan synthase 2 /FL=gb:NM_013153.1 gb:AF008201.1 NM_013153 hyaluronan synthase 2 Has2 25694 NM_013153 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0050501 // hyaluronan synthase activity // inferred from electronic annotation 1387549_at NM_024361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024361.1 /DB_XREF=gi:13242252 /GEN=Ndst1 /FEA=FLmRNA /CNT=2 /TID=Rn.9705.1 /TIER=FL /STK=2 /UG=Rn.9705 /LL=29633 /DEF=Rattus norvegicus N-deacetylaseN-sulfotransferase (heparan glucosaminyl) 1 (Ndst1), mRNA. /PROD=N-deacetylaseN-sulfotransferase (heparanglucosaminyl) 1 /FL=gb:M92042.1 gb:NM_024361.1 NM_024361 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 Ndst1 29633 NM_024361 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000165 // MAPKKK cascade // not recorded /// 0000271 // polysaccharide biosynthetic process // inferred from electronic annotation /// 0000271 // polysaccharide biosynthetic process // not recorded /// 0006477 // protein sulfation // inferred from electronic annotation /// 0006477 // protein sulfation // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // not recorded /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0030203 // glycosaminoglycan metabolic process // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0030901 // midbrain development // inferred from electronic annotation /// 0030901 // midbrain development // not recorded /// 0048702 // embryonic neurocranium morphogenesis // inferred from electronic annotation /// 0048702 // embryonic neurocranium morphogenesis // not recorded /// 0048703 // embryonic viscerocranium morphogenesis // inferred from electronic annotation /// 0048703 // embryonic viscerocranium morphogenesis // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0015016 // [heparan sulfate]-glucosamine N-sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387550_a_at NM_019347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019347.1 /DB_XREF=gi:9507112 /GEN=Slc14a2 /FEA=FLmRNA /CNT=2 /TID=Rn.10157.1 /TIER=FL /STK=2 /UG=Rn.10157 /LL=54302 /DEF=Rattus norvegicus solute carrier family 14, member 2 (Slc14a2), mRNA. /PROD=solute carrier family 14, member 2 /FL=gb:U77971.1 gb:NM_019347.1 NM_019347 solute carrier family 14 (urea transporter), member 2 Slc14a2 54302 NM_001110270 /// NM_019347 /// NM_177962 0006810 // transport // inferred from electronic annotation /// 0009414 // response to water deprivation // inferred from expression pattern /// 0015840 // urea transport // inferred from electronic annotation /// 0015840 // urea transport // not recorded /// 0015840 // urea transport // non-traceable author statement /// 0055085 // transmembrane transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0015204 // urea transmembrane transporter activity // inferred from electronic annotation /// 0015204 // urea transmembrane transporter activity // not recorded /// 0015204 // urea transmembrane transporter activity // non-traceable author statement 1387551_at NM_131912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_131912.1 /DB_XREF=gi:18777773 /GEN=erg3 /FEA=FLmRNA /CNT=2 /TID=Rn.10874.1 /TIER=FL /STK=2 /UG=Rn.10874 /LL=170739 /DEF=Rattus norvegicus potassium channel erg3 (erg3), mRNA. /PROD=potassium channel erg3 /FL=gb:NM_131912.1 gb:AF016191.1 NM_131912 potassium voltage-gated channel, subfamily H (eag-related), member 7 Kcnh7 170739 NM_131912 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from direct assay /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from expression pattern /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from direct assay /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from direct assay /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from direct assay /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387552_at NM_053901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053901.1 /DB_XREF=gi:16758773 /GEN=Dlgap2 /FEA=FLmRNA /CNT=2 /TID=Rn.10705.1 /TIER=FL /STK=2 /UG=Rn.10705 /LL=116681 /DEF=Rattus norvegicus discs, large (Drosophila) homolog-associated protein 2 (Dlgap2), mRNA. /PROD=discs, large (Drosophila) homolog-associatedprotein 2 /FL=gb:U67138.1 gb:NM_053901.1 NM_053901 discs, large (Drosophila) homolog-associated protein 2 Dlgap2 116681 NM_053901 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007270 // nerve-nerve synaptic transmission // non-traceable author statement 0005883 // neurofilament // non-traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // non-traceable author statement /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004385 // guanylate kinase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from direct assay 1387553_at NM_012810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012810.1 /DB_XREF=gi:6981615 /GEN=Sycp1 /FEA=FLmRNA /CNT=2 /TID=Rn.10420.1 /TIER=FL /STK=2 /UG=Rn.10420 /LL=25276 /DEF=Rattus norvegicus Synaptonemal complex protein 1 (Sycp1), mRNA. /PROD=A coiled-coil related protein specific forsynapsed regions of meiotic prophase chromosomes /FL=gb:NM_012810.1 NM_012810 synaptonemal complex protein 1 Sycp1 25276 NM_012810 0007049 // cell cycle // inferred from electronic annotation /// 0007126 // meiosis // inferred from electronic annotation /// 0007130 // synaptonemal complex assembly // inferred from electronic annotation /// 0007130 // synaptonemal complex assembly // not recorded /// 0032880 // regulation of protein localization // inferred from electronic annotation /// 0032880 // regulation of protein localization // not recorded /// 0051301 // cell division // inferred from electronic annotation 0000795 // synaptonemal complex // not recorded /// 0000795 // synaptonemal complex // inferred from electronic annotation /// 0000801 // central element // inferred from electronic annotation /// 0000801 // central element // not recorded /// 0000802 // transverse filament // inferred from electronic annotation /// 0000802 // transverse filament // not recorded /// 0001673 // male germ cell nucleus // inferred from electronic annotation /// 0001673 // male germ cell nucleus // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // non-traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387554_at NM_031796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031796.1 /DB_XREF=gi:13929125 /GEN=Galnt5 /FEA=FLmRNA /CNT=2 /TID=Rn.30048.1 /TIER=FL /STK=2 /UG=Rn.30048 /LL=83627 /DEF=Rattus norvegicus UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase T5 (Galnt5), mRNA. /PROD=UDP-GalNAc:polypeptideN-acetylgalactosaminyltransferase T5 /FL=gb:NM_031796.1 gb:AF049344.1 NM_031796 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5) Galnt5 83627 NM_031796 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // not recorded /// 0005529 // sugar binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1387555_at NM_024154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024154.1 /DB_XREF=gi:13162348 /GEN=Accn2 /FEA=FLmRNA /CNT=2 /TID=Rn.37385.1 /TIER=FL /STK=2 /UG=Rn.37385 /LL=79123 /DEF=Rattus norvegicus amiloride-sensitive cation channel 2, neuronal (Accn2), mRNA. /PROD=amiloride-sensitive cation channel 2, neuronal /FL=gb:NM_024154.1 gb:U94403.1 NM_024154 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0019233 // sensory perception of pain // non-traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from direct assay /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0015280 // ligand-gated sodium channel activity // inferred from electronic annotation 1387556_at NM_013225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013225.1 /DB_XREF=gi:6981245 /GEN=Cntn6 /FEA=FLmRNA /CNT=2 /TID=Rn.10644.1 /TIER=FL /STK=2 /UG=Rn.10644 /LL=27256 /DEF=Rattus norvegicus contactin 6 (Cntn6), mRNA. /PROD=neural adhesion molecule /FL=gb:NM_013225.1 gb:D87248.1 NM_013225 contactin 6 Cntn6 27256 NM_013225 0007155 // cell adhesion // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0046658 // anchored to plasma membrane // traceable author statement 1387557_s_at NM_022961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022961.1 /DB_XREF=gi:12621145 /GEN=Vps33a /FEA=FLmRNA /CNT=2 /TID=Affx.1.3 /TIER=FL /STK=2 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus vacuolar protein sorting protein 33a (Vps33a), mRNA. /PROD=vacuolar protein sorting protein 33a /FL=gb:U35244.1 gb:NM_022961.1 NM_022961 0006810 // transport // inferred from electronic annotation /// 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay 1387558_at NM_023970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023970.1 /DB_XREF=gi:13027423 /GEN=Otrpc4-pending /FEA=FLmRNA /CNT=2 /TID=Rn.64508.1 /TIER=FL /STK=2 /UG=Rn.64508 /LL=66026 /DEF=Rattus norvegicus osmosensitive transient receptor potential channel 4 (Otrpc4-pending), mRNA. /PROD=vanilloid receptor-related osmotically activatedchannel (Vroac) /FL=gb:NM_023970.1 gb:AF263521.1 NM_023970 transient receptor potential cation channel, subfamily V, member 4 Trpv4 66026 NM_023970 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from sequence or structural similarity /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006970 // response to osmotic stress // not recorded /// 0006970 // response to osmotic stress // inferred from electronic annotation /// 0006971 // hypotonic response // inferred from direct assay /// 0007043 // cell-cell junction assembly // not recorded /// 0007043 // cell-cell junction assembly // inferred from sequence or structural similarity /// 0007165 // signal transduction // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007231 // osmosensory signaling pathway // inferred from electronic annotation /// 0007231 // osmosensory signaling pathway // not recorded /// 0030103 // vasopressin secretion // inferred from electronic annotation /// 0030103 // vasopressin secretion // not recorded /// 0042538 // hyperosmotic salinity response // inferred from electronic annotation /// 0042538 // hyperosmotic salinity response // not recorded /// 0047484 // regulation of response to osmotic stress // inferred from electronic annotation /// 0047484 // regulation of response to osmotic stress // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // not recorded 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0005912 // adherens junction // inferred from sequence or structural similarity /// 0005912 // adherens junction // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0005929 // cilium // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005034 // osmosensor activity // inferred from electronic annotation /// 0005034 // osmosensor activity // not recorded /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // inferred from direct assay /// 0005261 // cation channel activity // not recorded /// 0005261 // cation channel activity // inferred from sequence or structural similarity /// 0005261 // cation channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // not recorded /// 0005516 // calmodulin binding // inferred from sequence or structural similarity /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1387559_at NM_133308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133308.2 /DB_XREF=gi:20376815 /GEN=Grin3b /FEA=FLmRNA /CNT=2 /TID=Rn.81226.1 /TIER=FL /STK=2 /UG=Rn.81226 /DEF=Rattus norvegicus glutamate receptor, ionotropic, NMDA3B (Grin3b), mRNA. /PROD=glutamate receptor, ionotropic, NMDA3B /FL=gb:NM_133308.2 gb:AF440691.1 NM_133308 glutamate receptor, ionotropic, N-methyl-D-aspartate 3B Grin3b 170796 NM_133308 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from direct assay /// 0051205 // protein insertion into membrane // inferred from electronic annotation /// 0051205 // protein insertion into membrane // not recorded /// 0051924 // regulation of calcium ion transport // inferred from electronic annotation /// 0051924 // regulation of calcium ion transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // inferred from direct assay /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // not recorded /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030288 // outer membrane-bounded periplasmic space // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // inferred from direct assay /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // not recorded /// 0016594 // glycine binding // inferred from direct assay /// 0030594 // neurotransmitter receptor activity // inferred from direct assay /// 0042165 // neurotransmitter binding // inferred from direct assay 1387560_a_at NM_023971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023971.1 /DB_XREF=gi:13095923 /GEN=Drp2 /FEA=FLmRNA /CNT=2 /TID=Rn.64510.1 /TIER=FL /STK=2 /UG=Rn.64510 /LL=66027 /DEF=Rattus norvegicus dystrophin-related protein 2 A-form splice variant (Drp2), mRNA. /PROD=dystrophin-related protein 2 A-form splicevariant /FL=gb:NM_023971.1 gb:AF195787.1 NM_023971 dystrophin related protein 2 Drp2 66027 NM_023971 0050808 // synapse organization // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0030425 // dendrite // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387561_at NM_012685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012685.1 /DB_XREF=gi:6981703 /GEN=Vipr1 /FEA=FLmRNA /CNT=2 /TID=Rn.9973.1 /TIER=FL /STK=2 /UG=Rn.9973 /LL=24875 /DEF=Rattus norvegicus Vasopressive intestinal peptide receptor (Vipr1), mRNA. /PROD=vasopressive intestinal peptide receptor /FL=gb:NM_012685.1 gb:M86835.1 NM_012685 vasoactive intestinal peptide receptor 1 Vipr1 24875 NM_012685 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004999 // vasoactive intestinal polypeptide receptor activity // inferred from direct assay /// 0004999 // vasoactive intestinal polypeptide receptor activity // inferred from electronic annotation 1387562_at NM_017230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017230.1 /DB_XREF=gi:8393937 /GEN=Pdi3 /FEA=FLmRNA /CNT=2 /TID=Rn.32094.1 /TIER=FL /STK=2 /UG=Rn.32094 /LL=29520 /DEF=Rattus norvegicus peptidyl arginine deiminase, type III (Pdi3), mRNA. /PROD=peptidyl arginine deiminase, type III /FL=gb:NM_017230.1 gb:D88034.1 NM_017230 peptidyl arginine deiminase, type III Padi3 29520 NM_017230 0006464 // protein modification process // inferred from electronic annotation /// 0018101 // peptidyl-citrulline biosynthetic process from peptidyl-arginine // inferred from electronic annotation /// 0019546 // arginine deiminase pathway // non-traceable author statement 0005737 // cytoplasm // inferred from electronic annotation 0004668 // protein-arginine deiminase activity // inferred from direct assay /// 0004668 // protein-arginine deiminase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387563_at NM_022847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022847.1 /DB_XREF=gi:12408291 /GEN=Pgr /FEA=FLmRNA /CNT=2 /TID=Rn.10303.1 /TIER=FL /STK=2 /UG=Rn.10303 /LL=25154 /DEF=Rattus norvegicus Progesterone receptor (Pgr), mRNA. /PROD=progesterone receptor /FL=gb:NM_022847.1 gb:L16922.1 NM_022847 progesterone receptor Pgr 25154 NM_022847 0001542 // ovulation from ovarian follicle // not recorded /// 0001542 // ovulation from ovarian follicle // inferred from electronic annotation /// 0002070 // epithelial cell maturation // not recorded /// 0002070 // epithelial cell maturation // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0030879 // mammary gland development // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0043401 // steroid hormone mediated signaling pathway // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from expression pattern /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from direct assay /// 0050678 // regulation of epithelial cell proliferation // not recorded /// 0050678 // regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050847 // progesterone receptor signaling pathway // not recorded /// 0050847 // progesterone receptor signaling pathway // inferred from electronic annotation /// 0060748 // tertiary branching involved in mammary gland duct morphogenesis // not recorded /// 0060748 // tertiary branching involved in mammary gland duct morphogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from direct assay /// 0003707 // steroid hormone receptor activity // inferred from mutant phenotype /// 0003707 // steroid hormone receptor activity // not recorded /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from direct assay /// 0004879 // ligand-dependent nuclear receptor activity // not recorded /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005496 // steroid binding // inferred from direct assay /// 0005496 // steroid binding // inferred from mutant phenotype /// 0005496 // steroid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0030528 // transcription regulator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042562 // hormone binding // inferred from direct assay /// 0042562 // hormone binding // inferred from mutant phenotype /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387564_at NM_078619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_078619.1 /DB_XREF=gi:17530966 /GEN=Slc8a2 /FEA=FLmRNA /CNT=2 /TID=Rn.10305.1 /TIER=FL /STK=2 /UG=Rn.10305 /LL=140447 /DEF=Rattus norvegicus solute carrier family 8 (sodiumcalcium exchanger), member 2 (Slc8a2), mRNA. /PROD=solute carrier family 8 (sodiumcalciumexchanger), member 2 /FL=gb:NM_078619.1 gb:U08141.1 NM_078619 solute carrier family 8 (sodium/calcium exchanger), member 2 Slc8a2 140447 NM_078619 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0021537 // telencephalon development // inferred from expression pattern /// 0033280 // response to vitamin D // inferred from expression pattern /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060402 // calcium ion transport into cytosol // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005874 // microtubule // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0005432 // calcium:sodium antiporter activity // inferred from direct assay /// 0005432 // calcium:sodium antiporter activity // inferred from electronic annotation /// 0005432 // calcium:sodium antiporter activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation 1387565_at NM_053686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053686.1 /DB_XREF=gi:16758503 /GEN=Ecac2 /FEA=FLmRNA /CNT=2 /TID=Rn.81059.1 /TIER=FL /STK=2 /UG=Rn.81059 /LL=114246 /DEF=Rattus norvegicus epithelial apical membrane calcium transporterchannel CaT1 (Ecac2), mRNA. /PROD=epithelial apical membrane calciumtransporterchannel CaT1 /FL=gb:AF160798.1 gb:NM_053686.1 NM_053686 transient receptor potential cation channel, subfamily V, member 6 Trpv6 114246 NM_053686 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005227 // calcium activated cation channel activity // traceable author statement /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // not recorded 1387566_at NM_133551 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133551.1 /DB_XREF=gi:19424223 /GEN=Pla2g4a /FEA=FLmRNA /CNT=2 /TID=Rn.10162.1 /TIER=FL /STK=2 /UG=Rn.10162 /LL=171077 /DEF=Rattus norvegicus phospholipase A2, group IVA (cytosolic, calcium-dependent) (Pla2g4a), mRNA. /PROD=phospholipase A2, group IVA (cytosolic,calcium-dependent) /FL=gb:U38376.1 gb:NM_133551.1 NM_133551 phospholipase A2, group IVA (cytosolic, calcium-dependent) Pla2g4a 24653 NM_133551 0001542 // ovulation from ovarian follicle // inferred from mutant phenotype /// 0001554 // luteolysis // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0009395 // phospholipid catabolic process // inferred from electronic annotation /// 0009408 // response to heat // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from mutant phenotype /// 0010226 // response to lithium ion // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0019369 // arachidonic acid metabolic process // inferred from mutant phenotype /// 0030501 // positive regulation of bone mineralization // inferred from expression pattern /// 0031340 // positive regulation of vesicle fusion // inferred from mutant phenotype /// 0031394 // positive regulation of prostaglandin biosynthetic process // inferred from mutant phenotype /// 0031622 // positive regulation of fever // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033280 // response to vitamin D // inferred from expression pattern /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043129 // surfactant homeostasis // inferred from mutant phenotype /// 0046697 // decidualization // inferred from mutant phenotype /// 0050729 // positive regulation of inflammatory response // inferred from mutant phenotype /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from mutant phenotype /// 0051597 // response to methylmercury // inferred from expression pattern 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042588 // zymogen granule // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004620 // phospholipase activity // inferred from electronic annotation /// 0004622 // lysophospholipase activity // inferred from electronic annotation /// 0004623 // phospholipase A2 activity // traceable author statement /// 0004623 // phospholipase A2 activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005544 // calcium-dependent phospholipid binding // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0047498 // calcium-dependent phospholipase A2 activity // inferred from direct assay 1387567_at NM_017111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017111.1 /DB_XREF=gi:8394293 /GEN=Slc21a1 /FEA=FLmRNA /CNT=2 /TID=Rn.9912.1 /TIER=FL /STK=2 /UG=Rn.9912 /LL=50572 /DEF=Rattus norvegicus solute carrier family (organic anion transporter) member 1 (Slc21a1), mRNA. /PROD=solute carrier family (organic aniontransporter) member 3 /FL=gb:L19031.1 gb:NM_017111.1 NM_017111 solute carrier organic anion transporter family, member 1a1 Slco1a1 50572 NM_017111 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015711 // organic anion transport // inferred from expression pattern /// 0015711 // organic anion transport // not recorded /// 0015711 // organic anion transport // traceable author statement /// 0034220 // ion transmembrane transport // not recorded 0005624 // membrane fraction // not recorded /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded 0005215 // transporter activity // inferred from electronic annotation /// 0008514 // organic anion transmembrane transporter activity // inferred from expression pattern /// 0008514 // organic anion transmembrane transporter activity // not recorded /// 0008514 // organic anion transmembrane transporter activity // traceable author statement 1387568_at NM_031713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031713.1 /DB_XREF=gi:13928999 /GEN=Pirb /FEA=FLmRNA /CNT=2 /TID=Rn.81190.1 /TIER=FL /STK=2 /UG=Rn.81190 /LL=65146 /DEF=Rattus norvegicus paired-Ig-like receptor B (Pirb), mRNA. /PROD=paired-Ig-like receptor B /FL=gb:NM_031713.1 gb:AF082534.1 NM_031713 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3 Lilrb3 65146 NM_031713 0001782 // B cell homeostasis // not recorded /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019724 // B cell mediated immunity // not recorded /// 0043011 // myeloid dendritic cell differentiation // not recorded 1387569_at NM_031593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031593.1 /DB_XREF=gi:13928803 /GEN=Sv2c /FEA=FLmRNA /CNT=2 /TID=Rn.74043.1 /TIER=FL /STK=2 /UG=Rn.74043 /LL=29643 /DEF=Rattus norvegicus synaptic vesicle protein 2C (Sv2c), mRNA. /PROD=synaptic vesicle protein 2C /FL=gb:NM_031593.1 gb:AF060174.1 NM_031593 synaptic vesicle glycoprotein 2c Sv2c 29643 NM_031593 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008021 // synaptic vesicle // inferred from direct assay /// 0008021 // synaptic vesicle // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation 1387570_at NM_080785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080785.1 /DB_XREF=gi:18158454 /GEN=Enman /FEA=FLmRNA /CNT=2 /TID=Rn.10855.1 /TIER=FL /STK=2 /UG=Rn.10855 /LL=140808 /DEF=Rattus norvegicus endo-alpha-mannosidase (Enman), mRNA. /PROD=endo-alpha-mannosidase /FL=gb:AF023657.1 gb:NM_080785.1 NM_080785 mannosidase, endo-alpha Manea 140808 NM_080785 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004559 // alpha-mannosidase activity // inferred from direct assay /// 0004569 // glycoprotein endo-alpha-1,2-mannosidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387571_at NM_031130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031130.1 /DB_XREF=gi:13592106 /GEN=Nr2f1 /FEA=FLmRNA /CNT=2 /TID=Rn.37567.1 /TIER=FL /STK=2 /UG=Rn.37567 /LL=81808 /DEF=Rattus norvegicus nuclear receptor subfamily 2, group F, member 1 (Nr2f1), mRNA. /PROD=nuclear receptor subfamily 2, group F, member 1 /FL=gb:U10995.1 gb:NM_031130.1 NM_031130 nuclear receptor subfamily 2, group F, member 1 Nr2f1 81808 NM_031130 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007399 // nervous system development // inferred from direct assay /// 0030900 // forebrain development // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387572_at NM_134370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134370.1 /DB_XREF=gi:19705468 /GEN=EFA6 /FEA=FLmRNA /CNT=2 /TID=Rn.64489.1 /TIER=FL /STK=2 /UG=Rn.64489 /LL=171381 /DEF=Rattus norvegicus exchange factor for ARF6 (EFA6), mRNA. /PROD=exchange factor for ARF6 /FL=gb:NM_134370.1 gb:AB040468.1 NM_134370 pleckstrin and Sec7 domain containing Psd 171381 NM_134370 0015854 // guanine transport // traceable author statement /// 0030182 // neuron differentiation // inferred from expression pattern /// 0032012 // regulation of ARF protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay 0001409 // guanine nucleotide transmembrane transporter activity // traceable author statement /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005086 // ARF guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1387573_a_at NM_021742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021742.1 /DB_XREF=gi:13492974 /GEN=Nr5a2 /FEA=FLmRNA /CNT=2 /TID=Rn.42941.1 /TIER=FL /STK=2 /UG=Rn.42941 /LL=60349 /DEF=Rattus norvegicus nuclear receptor subfamily 5, group A, member 2 (Nr5a2), mRNA. /PROD=FTZ-F1 beta1 protein /FL=gb:NM_021742.1 gb:AB012960.1 NM_021742 nuclear receptor subfamily 5, group A, member 2 Nr5a2 60349 NM_021742 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008206 // bile acid metabolic process // inferred from electronic annotation /// 0008206 // bile acid metabolic process // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0045070 // positive regulation of viral genome replication // inferred from electronic annotation /// 0045070 // positive regulation of viral genome replication // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from direct assay /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387574_at NM_133420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133420.1 /DB_XREF=gi:19173791 /GEN=Chrna2 /FEA=FLmRNA /CNT=2 /TID=Rn.9713.1 /TIER=FL /STK=2 /UG=Rn.9713 /LL=170945 /DEF=Rattus norvegicus cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal) (Chrna2), mRNA. /PROD=cholinergic receptor, nicotinic, alphapolypeptide 2 (neuronal) /FL=gb:NM_133420.1 gb:L10077.1 NM_133420 cholinergic receptor, nicotinic, alpha 2 (neuronal) Chrna2 170945 NM_133420 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from direct assay /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from electronic annotation /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from direct assay /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // not recorded /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0015464 // acetylcholine receptor activity // inferred from electronic annotation /// 0015464 // acetylcholine receptor activity // not recorded /// 0042166 // acetylcholine binding // inferred from direct assay 1387575_at NM_019219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019219.2 /DB_XREF=gi:9625028 /GEN=Rbbp9 /FEA=FLmRNA /CNT=2 /TID=Rn.54049.1 /TIER=FL /STK=2 /UG=Rn.54049 /LL=29459 /DEF=Rattus norvegicus retinoblastoma-binding protein 9 (Rbbp9), mRNA. /PROD=retinoblastoma-binding protein 9 /FL=gb:NM_019219.2 gb:AF025819.2 NM_019219 retinoblastoma binding protein 9 Rbbp9 29459 NM_019219 0042127 // regulation of cell proliferation // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation 1387576_at NM_022798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022798.1 /DB_XREF=gi:12248182 /GEN=Rnf16 /FEA=FLmRNA /CNT=2 /TID=Rn.48706.1 /TIER=FL /STK=2 /UG=Rn.48706 /LL=64702 /DEF=Rattus norvegicus RING finger protein terf (Rnf16), mRNA. /PROD=RING finger protein terf /FL=gb:NM_022798.1 gb:AF156272.1 NM_022798 tripartite motif-containing 17 Trim17 64702 NM_022798 0006334 // nucleosome assembly // inferred from electronic annotation /// 0051865 // protein autoubiquitination // inferred from electronic annotation /// 0051865 // protein autoubiquitination // not recorded 0000786 // nucleosome // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387577_at NM_019326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019326.1 /DB_XREF=gi:9506916 /GEN=Neurod2 /FEA=FLmRNA /CNT=2 /TID=Rn.10724.1 /TIER=FL /STK=2 /UG=Rn.10724 /LL=54276 /DEF=Rattus norvegicus neurogenic differentiation 2 (Neurod2), mRNA. /PROD=neurogenic differentiation 2 /FL=gb:D82868.1 gb:NM_019326.1 NM_019326 neurogenic differentiation 2 Neurod2 54276 NM_019326 0001662 // behavioral fear response // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0008306 // associative learning // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048666 // neuron development // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1387578_a_at AF028604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF028604.1 /DB_XREF=gi:3851460 /GEN=P2X2 /FEA=mRNA /CNT=1 /TID=Rn.10991.11 /TIER=ConsEnd /STK=0 /UG=Rn.10991 /LL=114115 /DEF=Rattus norvegicus P2X2 purinoceptor isoform f (P2X2) mRNA, partial cds. /PROD=P2X2 purinoceptor isoform f AF028604 purinergic receptor P2X, ligand-gated ion channel, 2 P2rx2 114115 NM_053656 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0003029 // detection of hypoxic conditions in blood by carotid body chemoreceptor signaling // inferred from electronic annotation /// 0003029 // detection of hypoxic conditions in blood by carotid body chemoreceptor signaling // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0007268 // synaptic transmission // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0007528 // neuromuscular junction development // inferred from electronic annotation /// 0007528 // neuromuscular junction development // not recorded /// 0009743 // response to carbohydrate stimulus // inferred from electronic annotation /// 0009743 // response to carbohydrate stimulus // not recorded /// 0010033 // response to organic substance // not recorded /// 0010033 // response to organic substance // inferred from electronic annotation /// 0014832 // urinary bladder smooth muscle contraction // inferred from electronic annotation /// 0014832 // urinary bladder smooth muscle contraction // not recorded /// 0019228 // regulation of action potential in neuron // inferred from direct assay /// 0019228 // regulation of action potential in neuron // inferred from mutant phenotype /// 0030432 // peristalsis // inferred from electronic annotation /// 0030432 // peristalsis // not recorded /// 0033198 // response to ATP // inferred from electronic annotation /// 0033198 // response to ATP // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0048266 // behavioral response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // not recorded /// 0048741 // skeletal muscle fiber development // not recorded /// 0048741 // skeletal muscle fiber development // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from electronic annotation /// 0050909 // sensory perception of taste // not recorded /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051260 // protein homooligomerization // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0044424 // intracellular part // inferred from electronic annotation /// 0044424 // intracellular part // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0004931 // extracellular ATP-gated cation channel activity // inferred from direct assay /// 0004931 // extracellular ATP-gated cation channel activity // inferred from mutant phenotype /// 0004931 // extracellular ATP-gated cation channel activity // not recorded /// 0004931 // extracellular ATP-gated cation channel activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from direct assay /// 0015276 // ligand-gated ion channel activity // inferred from direct assay /// 0016151 // nickel ion binding // inferred from direct assay /// 0035091 // phosphoinositide binding // inferred from mutant phenotype /// 0042802 // identical protein binding // inferred from physical interaction /// 0042802 // identical protein binding // not recorded /// 0045340 // mercury ion binding // inferred from direct assay /// 0046870 // cadmium ion binding // inferred from direct assay /// 0050897 // cobalt ion binding // inferred from direct assay 1387579_at NM_053737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053737.1 /DB_XREF=gi:16758557 /GEN=Sirt2 /FEA=FLmRNA /CNT=2 /TID=Rn.74255.1 /TIER=FL /STK=2 /UG=Rn.74255 /LL=114556 /DEF=Rattus norvegicus sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae) (Sirt2), mRNA. /PROD=sirtuin 2 (silent mating type informationregulation 2, homolog) 2 (S. cerevisiae) /FL=gb:NM_053737.1 gb:AY030277.1 NM_053737 0000183 // chromatin silencing at rDNA // non-traceable author statement /// 0006342 // chromatin silencing // inferred from electronic annotation /// 0006342 // chromatin silencing // non-traceable author statement /// 0006348 // chromatin silencing at telomere // non-traceable author statement /// 0006471 // protein ADP-ribosylation // non-traceable author statement /// 0006471 // protein ADP-ribosylation // traceable author statement /// 0006476 // protein deacetylation // inferred from electronic annotation /// 0006476 // protein deacetylation // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007096 // regulation of exit from mitosis // non-traceable author statement /// 0016458 // gene silencing // non-traceable author statement /// 0016481 // negative regulation of transcription // inferred from direct assay /// 0016575 // histone deacetylation // traceable author statement /// 0042325 // regulation of phosphorylation // non-traceable author statement /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045843 // negative regulation of striated muscle tissue development // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation /// 0051775 // response to redox state // non-traceable author statement 0005677 // chromatin silencing complex // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotation 0003950 // NAD+ ADP-ribosyltransferase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016811 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides // inferred from electronic annotation /// 0017136 // NAD-dependent histone deacetylase activity // inferred from direct assay /// 0033558 // protein deacetylase activity // inferred from direct assay /// 0035035 // histone acetyltransferase binding // inferred from physical interaction /// 0042826 // histone deacetylase binding // inferred from physical interaction /// 0042903 // tubulin deacetylase activity // inferred from direct assay /// 0043130 // ubiquitin binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation /// 0070403 // NAD binding // inferred from electronic annotation /// 0070403 // NAD binding // inferred from direct assay 1387580_at NM_022711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022711.1 /DB_XREF=gi:12083682 /GEN=Srd5a2 /FEA=FLmRNA /CNT=2 /TID=Rn.9938.1 /TIER=FL /STK=2 /UG=Rn.9938 /LL=64677 /DEF=Rattus norvegicus steroid 5-alpha-reductase 2 (Srd5a2), mRNA. /PROD=steroid 5-alpha-reductase 2 /FL=gb:M95058.1 gb:NM_022711.1 NM_022711 steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2) Srd5a2 64677 NM_022711 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from direct assay /// 0006694 // steroid biosynthetic process // not recorded /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006702 // androgen biosynthetic process // inferred from electronic annotation /// 0006702 // androgen biosynthetic process // not recorded /// 0006706 // steroid catabolic process // inferred from direct assay /// 0007548 // sex differentiation // traceable author statement /// 0007548 // sex differentiation // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008209 // androgen metabolic process // not recorded /// 0008209 // androgen metabolic process // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0010033 // response to organic substance // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030539 // male genitalia development // not recorded /// 0030539 // male genitalia development // traceable author statement /// 0030539 // male genitalia development // inferred from electronic annotation /// 0042493 // response to drug // inferred from direct assay /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003865 // 3-oxo-5-alpha-steroid 4-dehydrogenase activity // inferred from direct assay /// 0003865 // 3-oxo-5-alpha-steroid 4-dehydrogenase activity // not recorded /// 0003865 // 3-oxo-5-alpha-steroid 4-dehydrogenase activity // inferred from electronic annotation /// 0009917 // sterol 5-alpha reductase activity // inferred from electronic annotation /// 0009917 // sterol 5-alpha reductase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation 1387581_at NM_022959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022959.1 /DB_XREF=gi:12621141 /GEN=P-cip1 /FEA=FLmRNA /CNT=2 /TID=Rn.30013.1 /TIER=FL /STK=2 /UG=Rn.30013 /LL=65053 /DEF=Rattus norvegicus PAM COOH-terminal interactor protein 1 (P-cip1), mRNA. /PROD=PAM COOH-terminal interactor protein 1 /FL=gb:NM_022959.1 gb:AF056208.1 NM_022959 Ras association (RalGDS/AF-6) domain family (N-terminal) member 9 Rassf9 65053 NM_022959 0006605 // protein targeting // non-traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0016197 // endosome transport // non-traceable author statement /// 0046907 // intracellular transport // inferred from direct assay 0005626 // insoluble fraction // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0012510 // trans-Golgi network transport vesicle membrane // inferred from direct assay /// 0012510 // trans-Golgi network transport vesicle membrane // not recorded /// 0012510 // trans-Golgi network transport vesicle membrane // inferred from electronic annotation 0005215 // transporter activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1387582_a_at NM_080894 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080894.1 /DB_XREF=gi:18266695 /GEN=Pde7b /FEA=FLmRNA /CNT=2 /TID=Rn.81203.1 /TIER=FL /STK=2 /UG=Rn.81203 /DEF=Rattus norvegicus phosphodiesterase 7B (Pde7b), mRNA. /PROD=phosphodiesterase 7B /FL=gb:NM_080894.1 gb:AB057409.1 NM_080894 phosphodiesterase 7B Pde7b 140929 NM_080894 0007165 // signal transduction // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0019933 // cAMP-mediated signaling // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from direct assay /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // not recorded /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387583_at NM_130408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130408.1 /DB_XREF=gi:18426827 /GEN=Cyp26 /FEA=FLmRNA /CNT=2 /TID=Rn.81072.1 /TIER=FL /STK=2 /UG=Rn.81072 /DEF=Rattus norvegicus cytochrome P450, 26, retinoic acid (Cyp26), mRNA. /PROD=cytochrome P450, 26, retinoic acid /FL=gb:NM_130408.1 gb:AF439720.1 NM_130408 cytochrome P450, family 26, subfamily a, polypeptide 1 Cyp26a1 154985 NM_130408 0007417 // central nervous system development // not recorded /// 0007417 // central nervous system development // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0014032 // neural crest cell development // not recorded /// 0014032 // neural crest cell development // inferred from electronic annotation /// 0034653 // retinoic acid catabolic process // not recorded /// 0034653 // retinoic acid catabolic process // inferred from electronic annotation /// 0042573 // retinoic acid metabolic process // not recorded /// 0042573 // retinoic acid metabolic process // inferred from electronic annotation /// 0048384 // retinoic acid receptor signaling pathway // not recorded /// 0048384 // retinoic acid receptor signaling pathway // inferred from electronic annotation 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from electronic annotation 0001972 // retinoic acid binding // not recorded /// 0001972 // retinoic acid binding // inferred from electronic annotation /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008401 // retinoic acid 4-hydroxylase activity // not recorded /// 0008401 // retinoic acid 4-hydroxylase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387584_at NM_017221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017221.1 /DB_XREF=gi:8394266 /GEN=Shh /FEA=FLmRNA /CNT=2 /TID=Rn.10432.1 /TIER=FL /STK=2 /UG=Rn.10432 /LL=29499 /DEF=Rattus norvegicus sonic hedgehog homolog, (Drosophila) (Shh), mRNA. /PROD=sonic hedgehog homolog, (Drosophila) /FL=gb:L27340.1 gb:NM_017221.1 NM_017221 sonic hedgehog Shh 29499 NM_017221 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001569 // patterning of blood vessels // inferred from sequence or structural similarity /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001570 // vasculogenesis // inferred from sequence or structural similarity /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001656 // metanephros development // not recorded /// 0001656 // metanephros development // inferred from sequence or structural similarity /// 0001656 // metanephros development // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from sequence or structural similarity /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001708 // cell fate specification // not recorded /// 0001708 // cell fate specification // inferred from sequence or structural similarity /// 0001708 // cell fate specification // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0001755 // neural crest cell migration // inferred from sequence or structural similarity /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0001822 // kidney development // inferred from electronic annotation /// 0001841 // neural tube formation // inferred from mutant phenotype /// 0001942 // hair follicle development // not recorded /// 0001942 // hair follicle development // inferred from electronic annotation /// 0001944 // vasculature development // inferred from electronic annotation /// 0001944 // vasculature development // not recorded /// 0001947 // heart looping // inferred from electronic annotation /// 0001947 // heart looping // not recorded /// 0002052 // positive regulation of neuroblast proliferation // inferred from direct assay /// 0002052 // positive regulation of neuroblast proliferation // not recorded /// 0002052 // positive regulation of neuroblast proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0002076 // osteoblast development // inferred from electronic annotation /// 0002076 // osteoblast development // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0006897 // endocytosis // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // not recorded /// 0007224 // smoothened signaling pathway // inferred from sequence or structural similarity /// 0007224 // smoothened signaling pathway // traceable author statement /// 0007224 // smoothened signaling pathway // inferred from electronic annotation /// 0007228 // positive regulation of hh target transcription factor activity // inferred from electronic annotation /// 0007228 // positive regulation of hh target transcription factor activity // not recorded /// 0007267 // cell-cell signaling // not recorded /// 0007267 // cell-cell signaling // inferred from sequence or structural similarity /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // not recorded /// 0007389 // pattern specification process // not recorded /// 0007389 // pattern specification process // inferred from sequence or structural similarity /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007398 // ectoderm development // inferred from electronic annotation /// 0007398 // ectoderm development // not recorded /// 0007405 // neuroblast proliferation // inferred from expression pattern /// 0007405 // neuroblast proliferation // not recorded /// 0007405 // neuroblast proliferation // inferred from sequence or structural similarity /// 0007405 // neuroblast proliferation // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from sequence or structural similarity /// 0007411 // axon guidance // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0007417 // central nervous system development // inferred from sequence or structural similarity /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007442 // hindgut morphogenesis // inferred from electronic annotation /// 0007442 // hindgut morphogenesis // not recorded /// 0007502 // digestive tract mesoderm development // inferred from direct assay /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from sequence or structural similarity /// 0007507 // heart development // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation /// 0007596 // blood coagulation // not recorded /// 0008209 // androgen metabolic process // not recorded /// 0008209 // androgen metabolic process // inferred from sequence or structural similarity /// 0008209 // androgen metabolic process // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008219 // cell death // not recorded /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0009790 // embryo development // inferred from sequence or structural similarity /// 0009790 // embryo development // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0009953 // dorsal/ventral pattern formation // inferred from sequence or structural similarity /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010463 // mesenchymal cell proliferation // not recorded /// 0010463 // mesenchymal cell proliferation // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0014003 // oligodendrocyte development // inferred from electronic annotation /// 0014003 // oligodendrocyte development // not recorded /// 0014706 // striated muscle tissue development // inferred from electronic annotation /// 0014706 // striated muscle tissue development // not recorded /// 0014858 // positive regulation of skeletal muscle cell proliferation // inferred from electronic annotation /// 0014858 // positive regulation of skeletal muscle cell proliferation // not recorded /// 0014902 // myotube differentiation // inferred from electronic annotation /// 0014902 // myotube differentiation // not recorded /// 0016539 // intein-mediated protein splicing // inferred from electronic annotation /// 0021513 // spinal cord dorsal/ventral patterning // inferred from direct assay /// 0021513 // spinal cord dorsal/ventral patterning // not recorded /// 0021513 // spinal cord dorsal/ventral patterning // inferred from electronic annotation /// 0021521 // ventral spinal cord interneuron specification // inferred from direct assay /// 0021904 // dorsal/ventral neural tube patterning // inferred from electronic annotation /// 0021904 // dorsal/ventral neural tube patterning // not recorded /// 0021938 // smoothened signaling pathway involved in regulation of granule cell precursor cell proliferation // inferred from electronic annotation /// 0021938 // smoothened signaling pathway involved in regulation of granule cell precursor cell proliferation // not recorded /// 0021940 // positive regulation of granule cell precursor proliferation // inferred from electronic annotation /// 0021940 // positive regulation of granule cell precursor proliferation // not recorded /// 0021978 // telencephalon regionalization // inferred from mutant phenotype /// 0021978 // telencephalon regionalization // not recorded /// 0021978 // telencephalon regionalization // inferred from electronic annotation /// 0030010 // establishment of cell polarity // inferred from electronic annotation /// 0030010 // establishment of cell polarity // not recorded /// 0030162 // regulation of proteolysis // not recorded /// 0030162 // regulation of proteolysis // inferred from sequence or structural similarity /// 0030162 // regulation of proteolysis // inferred from electronic annotation /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030323 // respiratory tube development // not recorded /// 0030323 // respiratory tube development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from sequence or structural similarity /// 0030324 // lung development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from sequence or structural similarity /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // not recorded /// 0030336 // negative regulation of cell migration // inferred from sequence or structural similarity /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0030539 // male genitalia development // not recorded /// 0030539 // male genitalia development // inferred from sequence or structural similarity /// 0030539 // male genitalia development // inferred from electronic annotation /// 0030850 // prostate gland development // inferred from expression pattern /// 0030850 // prostate gland development // not recorded /// 0030850 // prostate gland development // inferred from sequence or structural similarity /// 0030850 // prostate gland development // inferred from electronic annotation /// 0030856 // regulation of epithelial cell differentiation // inferred from expression pattern /// 0030878 // thyroid gland development // inferred from electronic annotation /// 0030878 // thyroid gland development // not recorded /// 0030900 // forebrain development // not recorded /// 0030900 // forebrain development // inferred from sequence or structural similarity /// 0030900 // forebrain development // inferred from electronic annotation /// 0030901 // midbrain development // not recorded /// 0030901 // midbrain development // inferred from sequence or structural similarity /// 0030901 // midbrain development // inferred from electronic annotation /// 0030902 // hindbrain development // not recorded /// 0030902 // hindbrain development // inferred from sequence or structural similarity /// 0030902 // hindbrain development // inferred from electronic annotation /// 0031016 // pancreas development // inferred from electronic annotation /// 0031016 // pancreas development // not recorded /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0035115 // embryonic forelimb morphogenesis // inferred from electronic annotation /// 0035115 // embryonic forelimb morphogenesis // not recorded /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0042127 // regulation of cell proliferation // inferred from direct assay /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from sequence or structural similarity /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042130 // negative regulation of T cell proliferation // inferred from electronic annotation /// 0042130 // negative regulation of T cell proliferation // not recorded /// 0042177 // negative regulation of protein catabolic process // not recorded /// 0042177 // negative regulation of protein catabolic process // inferred from electronic annotation /// 0042307 // positive regulation of protein import into nucleus // inferred from electronic annotation /// 0042307 // positive regulation of protein import into nucleus // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042476 // odontogenesis // not recorded /// 0042733 // embryonic digit morphogenesis // not recorded /// 0042733 // embryonic digit morphogenesis // inferred from sequence or structural similarity /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0043010 // camera-type eye development // inferred from electronic annotation /// 0043010 // camera-type eye development // not recorded /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0043587 // tongue morphogenesis // inferred from mutant phenotype /// 0043588 // skin development // inferred from electronic annotation /// 0043588 // skin development // not recorded /// 0045109 // intermediate filament organization // inferred from electronic annotation /// 0045109 // intermediate filament organization // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045445 // myoblast differentiation // inferred from electronic annotation /// 0045445 // myoblast differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045471 // response to ethanol // inferred from direct assay /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045596 // negative regulation of cell differentiation // inferred from sequence or structural similarity /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // not recorded /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046534 // positive regulation of photoreceptor cell differentiation // inferred from direct assay /// 0046639 // negative regulation of alpha-beta T cell differentiation // inferred from electronic annotation /// 0046639 // negative regulation of alpha-beta T cell differentiation // not recorded /// 0048314 // embryo sac morphogenesis // inferred from electronic annotation /// 0048314 // embryo sac morphogenesis // not recorded /// 0048468 // cell development // not recorded /// 0048468 // cell development // inferred from sequence or structural similarity /// 0048468 // cell development // inferred from electronic annotation /// 0048546 // digestive tract morphogenesis // not recorded /// 0048546 // digestive tract morphogenesis // inferred from electronic annotation /// 0048557 // embryonic digestive tract morphogenesis // inferred from electronic annotation /// 0048557 // embryonic digestive tract morphogenesis // not recorded /// 0048568 // embryonic organ development // inferred from electronic annotation /// 0048568 // embryonic organ development // not recorded /// 0048589 // developmental growth // inferred from electronic annotation /// 0048589 // developmental growth // not recorded /// 0048598 // embryonic morphogenesis // not recorded /// 0048598 // embryonic morphogenesis // inferred from electronic annotation /// 0048617 // embryonic foregut morphogenesis // inferred from electronic annotation /// 0048617 // embryonic foregut morphogenesis // not recorded /// 0048643 // positive regulation of skeletal muscle tissue development // inferred from electronic annotation /// 0048643 // positive regulation of skeletal muscle tissue development // not recorded /// 0048645 // organ formation // inferred from electronic annotation /// 0048645 // organ formation // not recorded /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded /// 0048646 // anatomical structure formation involved in morphogenesis // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0048663 // neuron fate commitment // inferred from sequence or structural similarity /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048678 // response to axon injury // inferred from mutant phenotype /// 0048706 // embryonic skeletal system development // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // not recorded /// 0048709 // oligodendrocyte differentiation // not recorded /// 0048709 // oligodendrocyte differentiation // inferred from electronic annotation /// 0048714 // positive regulation of oligodendrocyte differentiation // inferred from electronic annotation /// 0048714 // positive regulation of oligodendrocyte differentiation // not recorded /// 0048754 // branching morphogenesis of a tube // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from sequence or structural similarity /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048808 // male genitalia morphogenesis // inferred from mutant phenotype /// 0048839 // inner ear development // inferred from electronic annotation /// 0048839 // inner ear development // not recorded /// 0048856 // anatomical structure development // not recorded /// 0048856 // anatomical structure development // inferred from electronic annotation /// 0048859 // formation of anatomical boundary // inferred from electronic annotation /// 0048859 // formation of anatomical boundary // not recorded /// 0048864 // stem cell development // not recorded /// 0051146 // striated muscle cell differentiation // not recorded /// 0051146 // striated muscle cell differentiation // inferred from electronic annotation /// 0051151 // negative regulation of smooth muscle cell differentiation // inferred from electronic annotation /// 0051151 // negative regulation of smooth muscle cell differentiation // not recorded /// 0051152 // positive regulation of smooth muscle cell differentiation // inferred from electronic annotation /// 0051152 // positive regulation of smooth muscle cell differentiation // not recorded /// 0051155 // positive regulation of striated muscle cell differentiation // inferred from electronic annotation /// 0051155 // positive regulation of striated muscle cell differentiation // not recorded /// 0060020 // Bergmann glial cell differentiation // inferred from electronic annotation /// 0060020 // Bergmann glial cell differentiation // not recorded /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060173 // limb development // inferred from electronic annotation /// 0060173 // limb development // not recorded /// 0060174 // limb bud formation // inferred from electronic annotation /// 0060174 // limb bud formation // not recorded /// 0060406 // positive regulation of penile erection // inferred from mutant phenotype /// 0060425 // lung morphogenesis // not recorded /// 0060425 // lung morphogenesis // inferred from electronic annotation /// 0060428 // lung epithelium development // inferred from electronic annotation /// 0060428 // lung epithelium development // not recorded /// 0060438 // trachea development // not recorded /// 0060438 // trachea development // inferred from electronic annotation /// 0060439 // trachea morphogenesis // inferred from electronic annotation /// 0060439 // trachea morphogenesis // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // inferred from expression pattern /// 0060441 // epithelial tube branching involved in lung morphogenesis // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // inferred from electronic annotation /// 0060442 // branching involved in prostate gland morphogenesis // not recorded /// 0060442 // branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // not recorded /// 0060447 // bud outgrowth involved in lung branching // inferred from electronic annotation /// 0060447 // bud outgrowth involved in lung branching // not recorded /// 0060458 // right lung development // inferred from electronic annotation /// 0060458 // right lung development // not recorded /// 0060459 // left lung development // inferred from electronic annotation /// 0060459 // left lung development // not recorded /// 0060463 // lung lobe morphogenesis // inferred from electronic annotation /// 0060463 // lung lobe morphogenesis // not recorded /// 0060484 // lung-associated mesenchyme development // inferred from electronic annotation /// 0060484 // lung-associated mesenchyme development // not recorded /// 0060513 // prostatic bud formation // not recorded /// 0060516 // primary prostatic bud elongation // inferred from electronic annotation /// 0060516 // primary prostatic bud elongation // not recorded /// 0060523 // prostate epithelial cord elongation // inferred from electronic annotation /// 0060523 // prostate epithelial cord elongation // not recorded /// 0060662 // salivary gland cavitation // inferred from electronic annotation /// 0060662 // salivary gland cavitation // not recorded /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // not recorded /// 0060684 // epithelial-mesenchymal cell signaling // not recorded /// 0060684 // epithelial-mesenchymal cell signaling // inferred from electronic annotation /// 0060685 // regulation of prostatic bud formation // inferred from electronic annotation /// 0060685 // regulation of prostatic bud formation // not recorded /// 0060738 // epithelial-mesenchymal signaling involved in prostate gland development // not recorded /// 0060738 // epithelial-mesenchymal signaling involved in prostate gland development // inferred from electronic annotation /// 0060768 // regulation of epithelial cell proliferation involved in prostate gland development // not recorded /// 0060768 // regulation of epithelial cell proliferation involved in prostate gland development // inferred from electronic annotation /// 0060769 // positive regulation of epithelial cell proliferation involved in prostate gland development // inferred from electronic annotation /// 0060769 // positive regulation of epithelial cell proliferation involved in prostate gland development // not recorded /// 0060782 // regulation of mesenchymal cell proliferation involved in prostate gland development // inferred from electronic annotation /// 0060782 // regulation of mesenchymal cell proliferation involved in prostate gland development // not recorded /// 0060783 // mesenchymal smoothened signaling pathway involved in prostate gland development // inferred from electronic annotation /// 0060783 // mesenchymal smoothened signaling pathway involved in prostate gland development // not recorded /// 0060840 // artery development // inferred from electronic annotation /// 0060840 // artery development // not recorded /// 0060916 // mesenchymal cell proliferation involved in lung development // inferred from electronic annotation /// 0060916 // mesenchymal cell proliferation involved in lung development // not recorded /// 0061056 // sclerotome development // not recorded /// 0070447 // positive regulation of oligodendrocyte progenitor proliferation // inferred from direct assay /// 0071285 // cellular response to lithium ion // not recorded /// 0072193 // ureter smooth muscle cell differentiation // not recorded /// 0072199 // regulation of mesenchymal cell proliferation involved in ureter development // not recorded /// 0080125 // multicellular structure septum development // inferred from electronic annotation /// 0080125 // multicellular structure septum development // not recorded /// 0090041 // negative regulation of gene-specific transcription elongation from RNA polymerase II promoter // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from direct assay /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded /// 0045121 // membrane raft // inferred from direct assay /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from sequence or structural similarity /// 0045121 // membrane raft // inferred from electronic annotation 0001948 // glycoprotein binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // not recorded /// 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // inferred from sequence or structural similarity /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005102 // receptor binding // traceable author statement /// 0005113 // patched binding // inferred from electronic annotation /// 0005113 // patched binding // not recorded /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005539 // glycosaminoglycan binding // inferred from electronic annotation /// 0005539 // glycosaminoglycan binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016787 // hydrolase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0043237 // laminin-1 binding // not recorded /// 0043237 // laminin-1 binding // inferred from sequence or structural similarity /// 0043237 // laminin-1 binding // inferred from electronic annotation 1387585_at NM_031738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031738.1 /DB_XREF=gi:13929037 /GEN=Slc29a2 /FEA=FLmRNA /CNT=2 /TID=Rn.37517.1 /TIER=FL /STK=2 /UG=Rn.37517 /LL=65194 /DEF=Rattus norvegicus solute carrier family 29 (nucleoside transporters), member 2 (Slc29a2), mRNA. /PROD=solute carrier family 29 (nucleosidetransporters), member 2 /FL=gb:AF015305.1 gb:NM_031738.1 NM_031738 solute carrier family 29 (nucleoside transporters), member 2 Slc29a2 65194 NM_031738 0006810 // transport // inferred from electronic annotation /// 0007595 // lactation // inferred from expression pattern /// 0015853 // adenine transport // inferred from direct assay /// 0015854 // guanine transport // inferred from mutant phenotype /// 0015858 // nucleoside transport // inferred from direct assay /// 0015858 // nucleoside transport // not recorded /// 0015858 // nucleoside transport // inferred from electronic annotation /// 0015862 // uridine transport // inferred from mutant phenotype /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0035344 // hypoxanthine transport // inferred from mutant phenotype /// 0035364 // thymine transport // inferred from direct assay /// 0055085 // transmembrane transport // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005337 // nucleoside transmembrane transporter activity // inferred from direct assay /// 0005337 // nucleoside transmembrane transporter activity // not recorded /// 0005337 // nucleoside transmembrane transporter activity // inferred from electronic annotation 1387586_at NM_022288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022288.1 /DB_XREF=gi:11560118 /GEN=Csnk1g1 /FEA=FLmRNA /CNT=2 /TID=Rn.10082.1 /TIER=FL /STK=2 /UG=Rn.10082 /LL=64086 /DEF=Rattus norvegicus casein kinase 1 gamma 1 (Csnk1g1), mRNA. /PROD=casein kinase 1 gamma 1 /FL=gb:U22296.1 gb:NM_022288.1 NM_022288 casein kinase 1, gamma 1 Csnk1g1 64086 NM_022288 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0001948 // glycoprotein binding // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0051219 // phosphoprotein binding // inferred from direct assay 1387587_at NM_012908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012908.1 /DB_XREF=gi:6978524 /GEN=Tnfsf6 /FEA=FLmRNA /CNT=2 /TID=Rn.9725.1 /TIER=FL /STK=2 /UG=Rn.9725 /LL=25385 /DEF=Rattus norvegicus Tumor necrosis factor (ligand) superfamily, member 6 (apoptosis (APO-1) antigen ligand 1) (Fas antigen ligand) (Tnfsf6), mRNA. /PROD=apoptosis (APO-1) antigen ligand 1 (Fas antigenligand) /FL=gb:U03470.1 gb:NM_012908.1 NM_012908 Fas ligand (TNF superfamily, member 6) Faslg 25385 NM_012908 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0006925 // inflammatory cell apoptosis // inferred from genetic interaction /// 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0008624 // induction of apoptosis by extracellular signals // inferred from electronic annotation /// 0008625 // induction of apoptosis via death domain receptors // inferred from mutant phenotype /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0016525 // negative regulation of angiogenesis // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // not recorded /// 0030644 // cellular chloride ion homeostasis // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033554 // cellular response to stress // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0045742 // positive regulation of epidermal growth factor receptor signaling pathway // inferred from mutant phenotype /// 0046666 // retinal cell programmed cell death // inferred from electronic annotation /// 0046666 // retinal cell programmed cell death // not recorded /// 0048388 // endosomal lumen acidification // inferred from direct assay /// 0060554 // induction of necroptosis of activated-T cells // inferred from electronic annotation /// 0060554 // induction of necroptosis of activated-T cells // not recorded /// 0060555 // induction of necroptosis by extracellular signals // inferred from electronic annotation /// 0060555 // induction of necroptosis by extracellular signals // not recorded /// 0070265 // necrotic cell death // inferred from electronic annotation /// 0070265 // necrotic cell death // not recorded /// 0070848 // response to growth factor stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005123 // death receptor binding // inferred by curator /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005164 // tumor necrosis factor receptor binding // inferred from mutant phenotype /// 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387588_at NM_138890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_138890.1 /DB_XREF=gi:20302074 /GEN=Ehd3 /FEA=FLmRNA /CNT=2 /TID=Affx.1.10 /TIER=FL /STK=2 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus EH-domain containing 3 (Ehd3), mRNA. /PROD=EH-domain containing 3 /FL=gb:NM_138890.1 gb:AF494093.1 NM_138890 EH-domain containing 3 Ehd3 192249 NM_138890 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0030139 // endocytic vesicle // not recorded /// 0055038 // recycling endosome membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1387589_at NM_022931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022931.1 /DB_XREF=gi:12621089 /GEN=Nim2 /FEA=FLmRNA /CNT=2 /TID=Rn.54466.1 /TIER=FL /STK=2 /UG=Rn.54466 /LL=65025 /DEF=Rattus norvegicus Nim2 (Nim2), mRNA. /PROD=Nim2 /FL=gb:AF199334.1 gb:NM_022931.1 NM_022931 regulating synaptic membrane exocytosis 3 Rims3 65025 NM_022931 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0017156 // calcium ion-dependent exocytosis // inferred from direct assay 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 1387590_at NM_131909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_131909.1 /DB_XREF=gi:18777762 /GEN=Hrh4 /FEA=FLmRNA /CNT=2 /TID=Rn.81021.1 /TIER=FL /STK=2 /UG=Rn.81021 /DEF=Rattus norvegicus histamine H4 receptor (Hrh4), mRNA. /PROD=histamine H4 receptor /FL=gb:NM_131909.1 gb:AF358860.1 NM_131909 histamine receptor H4 Hrh4 170704 NM_131909 0006954 // inflammatory response // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004969 // histamine receptor activity // inferred from direct assay /// 0004969 // histamine receptor activity // not recorded /// 0004969 // histamine receptor activity // inferred from electronic annotation 1387591_at NM_013163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013163.1 /DB_XREF=gi:7710037 /GEN=Il2ra /FEA=FLmRNA /CNT=2 /TID=Rn.9872.1 /TIER=FL /STK=2 /UG=Rn.9872 /LL=25704 /DEF=Rattus norvegicus Interleukin 2 receptor, alpha chain (Il2ra), mRNA. /PROD=interleukin 2 receptor, alpha chain /FL=gb:NM_013163.1 gb:M55049.1 NM_013163 interleukin 2 receptor, alpha Il2ra 25704 NM_013163 0002437 // inflammatory response to antigenic stimulus // inferred from mutant phenotype /// 0006924 // activation-induced cell death of T cells // inferred from electronic annotation /// 0006924 // activation-induced cell death of T cells // not recorded /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from mutant phenotype /// 0042104 // positive regulation of activated T cell proliferation // inferred from electronic annotation /// 0042104 // positive regulation of activated T cell proliferation // not recorded /// 0042130 // negative regulation of T cell proliferation // inferred from electronic annotation /// 0042130 // negative regulation of T cell proliferation // not recorded /// 0043029 // T cell homeostasis // not recorded /// 0043029 // T cell homeostasis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0045582 // positive regulation of T cell differentiation // inferred from mutant phenotype /// 0046013 // regulation of T cell homeostatic proliferation // inferred from electronic annotation /// 0046013 // regulation of T cell homeostatic proliferation // not recorded /// 0050672 // negative regulation of lymphocyte proliferation // not recorded /// 0050672 // negative regulation of lymphocyte proliferation // inferred from electronic annotation /// 0050687 // negative regulation of defense response to virus // inferred from mutant phenotype /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // not recorded /// 0050777 // negative regulation of immune response // inferred from mutant phenotype 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004911 // interleukin-2 receptor activity // inferred from physical interaction /// 0004911 // interleukin-2 receptor activity // not recorded /// 0004911 // interleukin-2 receptor activity // inferred from electronic annotation /// 0008144 // drug binding // inferred from mutant phenotype /// 0019976 // interleukin-2 binding // not recorded /// 0019976 // interleukin-2 binding // inferred from electronic annotation 1387592_at NM_031575 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031575.1 /DB_XREF=gi:13928777 /GEN=Akt3 /FEA=FLmRNA /CNT=2 /TID=Rn.10506.1 /TIER=FL /STK=2 /UG=Rn.10506 /LL=29414 /DEF=Rattus norvegicus v-akt murine thymoma viral oncogene homolog 3 (protein kinase B gamma) (Akt3), mRNA. /PROD=v-akt murine thymoma viral oncogene homolog 3(protein kinase B gamma) /FL=gb:D49836.1 gb:NM_031575.1 NM_031575 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) Akt3 29414 NM_031575 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0010765 // positive regulation of sodium ion transport // inferred from mutant phenotype /// 0032869 // cellular response to insulin stimulus // inferred from mutant phenotype 0005625 // soluble fraction // inferred from direct assay /// 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005080 // protein kinase C binding // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387593_at NM_133549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133549.1 /DB_XREF=gi:19424221 /GEN=Hdgfrp1 /FEA=FLmRNA /CNT=2 /TID=Rn.81074.1 /TIER=FL /STK=2 /UG=Rn.81074 /DEF=Rattus norvegicus hepatoma-derived growth factor, related protein 1 (Hdgfrp1), mRNA. /PROD=hepatoma-derived growth factor, related protein1 /FL=gb:NM_133549.1 gb:AY061636.1 NM_133549 hepatoma derived growth factor-like 1 Hdgfl1 171074 NM_133549 1387594_at NM_022250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022250.1 /DB_XREF=gi:11560056 /GEN=Tgt /FEA=FLmRNA /CNT=2 /TID=Rn.53858.1 /TIER=FL /STK=2 /UG=Rn.53858 /LL=64016 /DEF=Rattus norvegicus tRNA-guanine transglycosylase (Tgt), mRNA. /PROD=tRNA-guanine transglycosylase /FL=gb:NM_022250.1 gb:AB034634.1 NM_022250 queuine tRNA-ribosyltransferase 1 Qtrt1 64016 NM_022250 0006400 // tRNA modification // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0008616 // queuosine biosynthetic process // not recorded /// 0008616 // queuosine biosynthetic process // traceable author statement /// 0008616 // queuosine biosynthetic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008479 // queuine tRNA-ribosyltransferase activity // not recorded /// 0008479 // queuine tRNA-ribosyltransferase activity // traceable author statement /// 0008479 // queuine tRNA-ribosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387595_at NM_017162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017162.1 /DB_XREF=gi:8393436 /GEN=Gif /FEA=FLmRNA /CNT=2 /TID=Rn.34903.1 /TIER=FL /STK=2 /UG=Rn.34903 /LL=29319 /DEF=Rattus norvegicus gastric intrinsic factor (Gif), mRNA. /PROD=gastric intrinsic factor /FL=gb:NM_017162.1 gb:J03577.1 NM_017162 gastric intrinsic factor Gif 29319 NM_017162 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006824 // cobalt ion transport // inferred from electronic annotation /// 0009235 // cobalamin metabolic process // inferred from direct assay /// 0015889 // cobalamin transport // inferred from electronic annotation /// 0015889 // cobalamin transport // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005902 // microvillus // inferred from electronic annotation /// 0005902 // microvillus // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded 0019842 // vitamin binding // traceable author statement /// 0031419 // cobalamin binding // inferred from direct assay /// 0031419 // cobalamin binding // not recorded /// 0031419 // cobalamin binding // inferred from electronic annotation 1387596_at NM_053897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053897.1 /DB_XREF=gi:16758769 /GEN=F2rl1 /FEA=FLmRNA /CNT=2 /TID=Rn.10543.1 /TIER=FL /STK=2 /UG=Rn.10543 /LL=116677 /DEF=Rattus norvegicus Proteinase-activated receptor-2, G protein-coupled receptor 11 (F2rl1), mRNA. /PROD=Proteinase-activated receptor-2, Gprotein-coupled receptor 11 /FL=gb:NM_053897.1 gb:U61373.1 NM_053897 coagulation factor II (thrombin) receptor-like 1 F2rl1 116677 NM_053897 0002690 // positive regulation of leukocyte chemotaxis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // traceable author statement /// 0007596 // blood coagulation // inferred from electronic annotation /// 0009306 // protein secretion // traceable author statement /// 0030193 // regulation of blood coagulation // not recorded /// 0050927 // positive regulation of positive chemotaxis // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0015057 // thrombin receptor activity // inferred from electronic annotation 1387597_at NM_053706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053706.1 /DB_XREF=gi:16758525 /GEN=Dmrt1 /FEA=FLmRNA /CNT=2 /TID=Rn.74260.1 /TIER=FL /STK=2 /UG=Rn.74260 /LL=114498 /DEF=Rattus norvegicus doublesex and mab-3 related transcription factor 1 (Dmrt1), mRNA. /PROD=doublesex and mab-3 related transcription factor1 /FL=gb:NM_053706.1 gb:AF379608.1 NM_053706 doublesex and mab-3 related transcription factor 1 Dmrt1 114498 NM_053706 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007548 // sex differentiation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0046661 // male sex differentiation // traceable author statement 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1387598_at NM_031133 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031133.1 /DB_XREF=gi:13592112 /GEN=Thpo /FEA=FLmRNA /CNT=2 /TID=Rn.10576.1 /TIER=FL /STK=2 /UG=Rn.10576 /LL=81811 /DEF=Rattus norvegicus mRNA for thrombopoietin (Thpo), mRNA. /PROD=mRNA for thrombopoietin /FL=gb:D32207.1 gb:NM_031133.1 NM_031133 thrombopoietin Thpo 81811 NM_031133 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0030099 // myeloid cell differentiation // inferred from electronic annotation /// 0030099 // myeloid cell differentiation // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005102 // receptor binding // inferred from direct assay /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005179 // hormone activity // inferred from electronic annotation 1387599_a_at J02679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J02679.1 /DB_XREF=gi:205741 /FEA=FLmRNA /CNT=21 /TID=Rn.11234.2 /TIER=FL+Stack /STK=8 /UG=Rn.11234 /LL=24314 /UG_GENE=Dia4 /UG_TITLE=Diaphorase (NADHNADPH) /DEF=Rat NAD(P)H:menadione oxidoreductase mRNA, complete cds. /FL=gb:J02608.1 gb:J02679.1 J02679 NAD(P)H dehydrogenase, quinone 1 Nqo1 24314 NM_017000 0006979 // response to oxidative stress // inferred from expression pattern /// 0006979 // response to oxidative stress // not recorded /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // inferred from electronic annotation /// 0043086 // negative regulation of catalytic activity // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003955 // NAD(P)H dehydrogenase (quinone) activity // inferred from direct assay /// 0003955 // NAD(P)H dehydrogenase (quinone) activity // not recorded /// 0003955 // NAD(P)H dehydrogenase (quinone) activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation 1387600_at NM_031029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031029.1 /DB_XREF=gi:13591944 /GEN=Gabrp /FEA=FLmRNA /CNT=2 /TID=Rn.21401.1 /TIER=FL /STK=2 /UG=Rn.21401 /LL=81658 /DEF=Rattus norvegicus GABA-A receptor pi subunit (Gabrp), mRNA. /PROD=GABA-A receptor pi subunit /FL=gb:U95368.1 gb:NM_031029.1 NM_031029 gamma-aminobutyric acid (GABA-A) receptor, pi Gabrp 81658 NM_031029 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004890 // GABA-A receptor activity // inferred from direct assay /// 0004890 // GABA-A receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation 1387601_at NM_053379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053379.1 /DB_XREF=gi:16758051 /GEN=Dcx /FEA=FLmRNA /CNT=2 /TID=Rn.35094.1 /TIER=FL /STK=2 /UG=Rn.35094 /LL=84394 /DEF=Rattus norvegicus doublecortin (Dcx), mRNA. /PROD=doublecortin /FL=gb:AF155959.1 gb:NM_053379.1 NM_053379 doublecortin Dcx 84394 NM_053379 0001764 // neuron migration // inferred from mutant phenotype /// 0001764 // neuron migration // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0021952 // central nervous system projection neuron axonogenesis // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0048675 // axon extension // not recorded /// 0048813 // dendrite morphogenesis // not recorded /// 0051602 // response to electrical stimulus // inferred from expression pattern 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay 0005515 // protein binding // not recorded 1387602_a_at NM_022189 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022189.1 /DB_XREF=gi:11559955 /GEN=Htr3b /FEA=FLmRNA /CNT=2 /TID=Rn.54002.1 /TIER=FL /STK=2 /UG=Rn.54002 /LL=58963 /DEF=Rattus norvegicus 5-hydroxytryptamine (serotonin) receptor 3B (Htr3b), mRNA. /PROD=5-hydroxytryptamine (serotonin) receptor 3B /FL=gb:NM_022189.1 gb:AF155044.1 NM_022189 5-hydroxytryptamine (serotonin) receptor 3b Htr3b 58963 NM_022189 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0007165 // signal transduction // not recorded /// 0007210 // serotonin receptor signaling pathway // inferred from electronic annotation /// 0007210 // serotonin receptor signaling pathway // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // inferred from direct assay /// 0004993 // serotonin receptor activity // not recorded /// 0004993 // serotonin receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005232 // serotonin-activated cation-selective channel activity // inferred from electronic annotation /// 0005232 // serotonin-activated cation-selective channel activity // not recorded 1387603_at NM_019261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019261.1 /DB_XREF=gi:9506840 /GEN=Klrc2 /FEA=FLmRNA /CNT=2 /TID=Rn.9894.1 /TIER=FL /STK=2 /UG=Rn.9894 /LL=29684 /DEF=Rattus norvegicus killer cell lectin-like receptor subfamily C, member 2 (Klrc2), mRNA. /PROD=killer cell lectin-like receptor subfamily C,member 2 /FL=gb:NM_019261.1 gb:AF021349.1 NM_019261 killer cell lectin-like receptor subfamily C, member 2 Klrc2 29684 NM_019261 0009897 // external side of plasma membrane // not recorded 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1387604_at NM_053362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053362.1 /DB_XREF=gi:16758089 /GEN=Dffb /FEA=FLmRNA /CNT=2 /TID=Rn.67077.1 /TIER=FL /STK=2 /UG=Rn.67077 /LL=84359 /DEF=Rattus norvegicus DNA fragmentation factor, 40 kD, beta polypeptide (caspase-activated DNase) (Dffb), mRNA. /PROD=DNA fragmentation factor, 40 kD, betapolypeptide (caspase-activ /FL=gb:AF136598.1 gb:NM_053362.1 NM_053362 DNA fragmentation factor, beta polypeptide (caspase-activated DNase) Dffb 84359 NM_053362 0006309 // DNA fragmentation involved in apoptotic nuclear change // inferred from direct assay /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // not recorded /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0030263 // apoptotic chromosome condensation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0004516 // nicotinate phosphoribosyltransferase activity // inferred from electronic annotation /// 0004516 // nicotinate phosphoribosyltransferase activity // not recorded /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004536 // deoxyribonuclease activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded 1387605_at NM_130422 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130422.1 /DB_XREF=gi:18426851 /GEN=Casp12 /FEA=FLmRNA /CNT=2 /TID=Rn.81078.1 /TIER=FL /STK=2 /UG=Rn.81078 /DEF=Rattus norvegicus caspase 12 (Casp12), mRNA. /PROD=caspase 12 /FL=gb:NM_130422.1 gb:AF317633.1 NM_130422 caspase 12 Casp12 156117 NM_130422 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // traceable author statement /// 0006915 // apoptosis // inferred from electronic annotation /// 0006926 // virus-infected cell apoptosis // inferred from electronic annotation /// 0006926 // virus-infected cell apoptosis // not recorded /// 0007568 // aging // inferred from expression pattern /// 0009409 // response to cold // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010041 // response to iron(III) ion // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0016540 // protein autoprocessing // inferred from direct assay /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // not recorded /// 0034059 // response to anoxia // inferred from expression pattern /// 0034976 // response to endoplasmic reticulum stress // inferred from expression pattern /// 0035094 // response to nicotine // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043280 // positive regulation of caspase activity // inferred from mutant phenotype /// 0045471 // response to ethanol // inferred from expression pattern /// 0070059 // apoptosis in response to endoplasmic reticulum stress // inferred from electronic annotation /// 0070059 // apoptosis in response to endoplasmic reticulum stress // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay 0004175 // endopeptidase activity // inferred from direct assay /// 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from direct assay /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387606_at NM_019305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019305.1 /DB_XREF=gi:9506598 /GEN=Fgf2 /FEA=FLmRNA /CNT=2 /TID=Rn.31808.1 /TIER=FL /STK=2 /UG=Rn.31808 /LL=54250 /DEF=Rattus norvegicus Fibroblast growth factor 2 (Fgf2), mRNA. /PROD=Fibroblast growth factor 2 /FL=gb:NM_019305.1 gb:M22427.1 NM_019305 fibroblast growth factor 2 Fgf2 54250 NM_019305 0000186 // activation of MAPKK activity // inferred from electronic annotation /// 0000186 // activation of MAPKK activity // not recorded /// 0000189 // nuclear translocation of MAPK // inferred from direct assay /// 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from sequence or structural similarity /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001759 // organ induction // inferred from electronic annotation /// 0001759 // organ induction // not recorded /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0002042 // cell migration involved in sprouting angiogenesis // inferred from electronic annotation /// 0002042 // cell migration involved in sprouting angiogenesis // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006700 // C21-steroid hormone biosynthetic process // inferred from direct assay /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007165 // signal transduction // inferred from direct assay /// 0007243 // intracellular protein kinase cascade // inferred from direct assay /// 0007268 // synaptic transmission // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from physical interaction /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0009790 // embryo development // inferred from mutant phenotype /// 0010001 // glial cell differentiation // inferred from electronic annotation /// 0010001 // glial cell differentiation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010628 // positive regulation of gene expression // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0017158 // regulation of calcium ion-dependent exocytosis // inferred from direct assay /// 0021940 // positive regulation of granule cell precursor proliferation // inferred from electronic annotation /// 0021940 // positive regulation of granule cell precursor proliferation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0042060 // wound healing // inferred from expression pattern /// 0042660 // positive regulation of cell fate specification // inferred from electronic annotation /// 0042660 // positive regulation of cell fate specification // not recorded /// 0043536 // positive regulation of blood vessel endothelial cell migration // inferred from electronic annotation /// 0043536 // positive regulation of blood vessel endothelial cell migration // not recorded /// 0043537 // negative regulation of blood vessel endothelial cell migration // inferred from electronic annotation /// 0043537 // negative regulation of blood vessel endothelial cell migration // not recorded /// 0045597 // positive regulation of cell differentiation // not recorded /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from direct assay /// 0045941 // positive regulation of transcription // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0046668 // regulation of retinal cell programmed cell death // inferred from electronic annotation /// 0046668 // regulation of retinal cell programmed cell death // not recorded /// 0048864 // stem cell development // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060045 // positive regulation of cardiac muscle cell proliferation // not recorded /// 0060128 // adrenocorticotropin hormone secreting cell differentiation // inferred from electronic annotation /// 0060128 // adrenocorticotropin hormone secreting cell differentiation // not recorded /// 0060129 // thyroid-stimulating hormone-secreting cell differentiation // inferred from electronic annotation /// 0060129 // thyroid-stimulating hormone-secreting cell differentiation // not recorded /// 0060548 // negative regulation of cell death // not recorded /// 0060548 // negative regulation of cell death // inferred from sequence or structural similarity /// 0060548 // negative regulation of cell death // inferred from electronic annotation /// 0060591 // chondroblast differentiation // inferred from electronic annotation /// 0060591 // chondroblast differentiation // not recorded /// 0060644 // mammary gland epithelial cell differentiation // inferred from electronic annotation /// 0060644 // mammary gland epithelial cell differentiation // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0005104 // fibroblast growth factor receptor binding // inferred from physical interaction /// 0005104 // fibroblast growth factor receptor binding // not recorded /// 0005104 // fibroblast growth factor receptor binding // inferred from electronic annotation /// 0005163 // nerve growth factor receptor binding // traceable author statement /// 0005245 // voltage-gated calcium channel activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0008201 // heparin binding // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // inferred from physical interaction 1387607_at NM_023980 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023980.1 /DB_XREF=gi:13027437 /GEN=Npgpr /FEA=FLmRNA /CNT=2 /TID=Rn.64524.1 /TIER=FL /STK=2 /UG=Rn.64524 /LL=78964 /DEF=Rattus norvegicus neuropeptide FF receptor 2 (Npgpr), mRNA. /PROD=neuropeptide FF receptor 2 /FL=gb:NM_023980.1 gb:AF268900.1 NM_023980 neuropeptide FF receptor 2 Npffr2 78964 NM_023980 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0008188 // neuropeptide receptor activity // inferred from electronic annotation 1387608_at NM_023973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023973.1 /DB_XREF=gi:13027383 /GEN=Ido /FEA=FLmRNA /CNT=2 /TID=Rn.64513.1 /TIER=FL /STK=2 /UG=Rn.64513 /LL=66029 /DEF=Rattus norvegicus indoleamine 2,3-dioxygenase (Ido), mRNA. /PROD=indoleamine 2,3-dioxygenase /FL=gb:NM_023973.1 gb:AF312699.1 NM_023973 indoleamine 2,3-dioxygenase 1 Ido1 66029 NM_023973 0002534 // cytokine production involved in inflammatory response // inferred from electronic annotation /// 0002534 // cytokine production involved in inflammatory response // not recorded /// 0002666 // positive regulation of T cell tolerance induction // inferred from electronic annotation /// 0002666 // positive regulation of T cell tolerance induction // not recorded /// 0002678 // positive regulation of chronic inflammatory response // inferred from electronic annotation /// 0002678 // positive regulation of chronic inflammatory response // not recorded /// 0002830 // positive regulation of type 2 immune response // inferred from electronic annotation /// 0002830 // positive regulation of type 2 immune response // not recorded /// 0006569 // tryptophan catabolic process // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0007610 // behavior // inferred from electronic annotation /// 0007610 // behavior // not recorded /// 0019441 // tryptophan catabolic process to kynurenine // inferred from direct assay /// 0019441 // tryptophan catabolic process to kynurenine // not recorded /// 0019441 // tryptophan catabolic process to kynurenine // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0032693 // negative regulation of interleukin-10 production // inferred from electronic annotation /// 0032693 // negative regulation of interleukin-10 production // not recorded /// 0032735 // positive regulation of interleukin-12 production // inferred from electronic annotation /// 0032735 // positive regulation of interleukin-12 production // not recorded /// 0033555 // multicellular organismal response to stress // inferred from electronic annotation /// 0033555 // multicellular organismal response to stress // not recorded /// 0034276 // kynurenic acid biosynthetic process // inferred from electronic annotation /// 0034276 // kynurenic acid biosynthetic process // not recorded /// 0042130 // negative regulation of T cell proliferation // not recorded /// 0042130 // negative regulation of T cell proliferation // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0046007 // negative regulation of activated T cell proliferation // inferred from electronic annotation /// 0046007 // negative regulation of activated T cell proliferation // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0070233 // negative regulation of T cell apoptosis // inferred from electronic annotation /// 0070233 // negative regulation of T cell apoptosis // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded 0004833 // tryptophan 2,3-dioxygenase activity // inferred from electronic annotation /// 0004833 // tryptophan 2,3-dioxygenase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from direct assay /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0019825 // oxygen binding // inferred from direct assay /// 0020037 // heme binding // inferred from electronic annotation /// 0033754 // indoleamine 2,3-dioxygenase activity // inferred from direct assay /// 0033754 // indoleamine 2,3-dioxygenase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387609_at NM_019293 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019293.1 /DB_XREF=gi:9506450 /GEN=Ca5 /FEA=FLmRNA /CNT=2 /TID=Rn.9988.1 /TIER=FL /STK=2 /UG=Rn.9988 /LL=54233 /DEF=Rattus norvegicus carbonic anhydrase 5 (Ca5), mRNA. /PROD=carbonic anhydrase 5 /FL=gb:U12268.1 gb:NM_019293.1 NM_019293 carbonic anhydrase 5a, mitochondrial Car5a 54233 NM_019293 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0004089 // carbonate dehydratase activity // inferred from direct assay /// 0004089 // carbonate dehydratase activity // not recorded /// 0004089 // carbonate dehydratase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387610_at NM_019190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019190.1 /DB_XREF=gi:9506882 /GEN=Mcp /FEA=FLmRNA /CNT=2 /TID=Rn.42945.1 /TIER=FL /STK=2 /UG=Rn.42945 /LL=29333 /DEF=Rattus norvegicus membrane cofactor protein (Mcp), mRNA. /PROD=membrane cofactor protein /FL=gb:AB010920.1 gb:NM_019190.1 NM_019190 CD46 molecule, complement regulatory protein Cd46 29333 NM_019190 0006508 // proteolysis // inferred from direct assay /// 0007338 // single fertilization // inferred from electronic annotation /// 0045916 // negative regulation of complement activation // inferred from direct assay 0001669 // acrosomal vesicle // inferred from direct assay /// 0002079 // inner acrosomal membrane // inferred from direct assay /// 0002079 // inner acrosomal membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0001848 // complement binding // inferred from physical interaction /// 0004175 // endopeptidase activity // inferred from direct assay /// 0004857 // enzyme inhibitor activity // inferred from direct assay 1387611_at NM_016993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_016993.1 /DB_XREF=gi:8392973 /GEN=Bcl2 /FEA=FLmRNA /CNT=2 /TID=Rn.9996.1 /TIER=FL /STK=2 /UG=Rn.9996 /LL=24224 /DEF=Rattus norvegicus B cell lymphoma 2 associated oncogene (Bcl2), mRNA. /PROD=B cell lymphoma 2 associated oncogene /FL=gb:NM_016993.1 gb:L14680.1 NM_016993 B-cell CLL/lymphoma 2 Bcl2 24224 NM_016993 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0000209 // protein polyubiquitination // inferred from electronic annotation /// 0000209 // protein polyubiquitination // not recorded /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0001101 // response to acid // not recorded /// 0001101 // response to acid // inferred from electronic annotation /// 0001503 // ossification // not recorded /// 0001503 // ossification // inferred from electronic annotation /// 0001541 // ovarian follicle development // inferred from expression pattern /// 0001541 // ovarian follicle development // not recorded /// 0001541 // ovarian follicle development // inferred from electronic annotation /// 0001656 // metanephros development // inferred from electronic annotation /// 0001656 // metanephros development // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001662 // behavioral fear response // inferred from electronic annotation /// 0001662 // behavioral fear response // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001776 // leukocyte homeostasis // not recorded /// 0001776 // leukocyte homeostasis // inferred from electronic annotation /// 0001782 // B cell homeostasis // inferred from electronic annotation /// 0001782 // B cell homeostasis // not recorded /// 0001822 // kidney development // not recorded /// 0001822 // kidney development // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // not recorded /// 0001836 // release of cytochrome c from mitochondria // inferred from sequence or structural similarity /// 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0001952 // regulation of cell-matrix adhesion // inferred from electronic annotation /// 0001952 // regulation of cell-matrix adhesion // not recorded /// 0002260 // lymphocyte homeostasis // not recorded /// 0002260 // lymphocyte homeostasis // inferred from electronic annotation /// 0002320 // lymphoid progenitor cell differentiation // inferred from electronic annotation /// 0002320 // lymphoid progenitor cell differentiation // not recorded /// 0002326 // B cell lineage commitment // inferred from electronic annotation /// 0002326 // B cell lineage commitment // not recorded /// 0002360 // T cell lineage commitment // inferred from electronic annotation /// 0002360 // T cell lineage commitment // not recorded /// 0002520 // immune system development // inferred from electronic annotation /// 0002520 // immune system development // not recorded /// 0003014 // renal system process // inferred from electronic annotation /// 0003014 // renal system process // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0006582 // melanin metabolic process // inferred from electronic annotation /// 0006582 // melanin metabolic process // not recorded /// 0006800 // oxygen and reactive oxygen species metabolic process // inferred from electronic annotation /// 0006800 // oxygen and reactive oxygen species metabolic process // not recorded /// 0006808 // regulation of nitrogen utilization // inferred from electronic annotation /// 0006808 // regulation of nitrogen utilization // not recorded /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from expression pattern /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // traceable author statement /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from direct assay /// 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006950 // response to stress // inferred from expression pattern /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0007015 // actin filament organization // inferred from electronic annotation /// 0007015 // actin filament organization // not recorded /// 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0007569 // cell aging // inferred from electronic annotation /// 0007569 // cell aging // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0008219 // cell death // inferred from electronic annotation /// 0008219 // cell death // not recorded /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0009408 // response to heat // inferred from expression pattern /// 0009605 // response to external stimulus // inferred from electronic annotation /// 0009605 // response to external stimulus // not recorded /// 0009636 // response to toxin // inferred from electronic annotation /// 0009636 // response to toxin // not recorded /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010039 // response to iron ion // inferred from electronic annotation /// 0010039 // response to iron ion // not recorded /// 0010044 // response to aluminum ion // inferred from expression pattern /// 0010224 // response to UV-B // inferred from electronic annotation /// 0010224 // response to UV-B // not recorded /// 0010332 // response to gamma radiation // inferred from electronic annotation /// 0010332 // response to gamma radiation // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0010523 // negative regulation of calcium ion transport into cytosol // inferred from electronic annotation /// 0010523 // negative regulation of calcium ion transport into cytosol // not recorded /// 0010559 // regulation of glycoprotein biosynthetic process // inferred from electronic annotation /// 0010559 // regulation of glycoprotein biosynthetic process // not recorded /// 0014031 // mesenchymal cell development // inferred from electronic annotation /// 0014031 // mesenchymal cell development // not recorded /// 0014042 // positive regulation of neuron maturation // inferred from electronic annotation /// 0014042 // positive regulation of neuron maturation // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014911 // positive regulation of smooth muscle cell migration // inferred from electronic annotation /// 0014911 // positive regulation of smooth muscle cell migration // not recorded /// 0016049 // cell growth // not recorded /// 0016049 // cell growth // inferred from electronic annotation /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0018105 // peptidyl-serine phosphorylation // inferred from electronic annotation /// 0018107 // peptidyl-threonine phosphorylation // inferred from electronic annotation /// 0018107 // peptidyl-threonine phosphorylation // not recorded /// 0021747 // cochlear nucleus development // inferred from electronic annotation /// 0021747 // cochlear nucleus development // not recorded /// 0022612 // gland morphogenesis // inferred from electronic annotation /// 0022612 // gland morphogenesis // not recorded /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded /// 0030183 // B cell differentiation // not recorded /// 0030183 // B cell differentiation // inferred from electronic annotation /// 0030217 // T cell differentiation // not recorded /// 0030217 // T cell differentiation // inferred from electronic annotation /// 0030279 // negative regulation of ossification // inferred from electronic annotation /// 0030279 // negative regulation of ossification // not recorded /// 0030307 // positive regulation of cell growth // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // not recorded /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0030318 // melanocyte differentiation // not recorded /// 0030318 // melanocyte differentiation // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // not recorded /// 0031000 // response to caffeine // inferred from expression pattern /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // not recorded /// 0031103 // axon regeneration // inferred from electronic annotation /// 0031103 // axon regeneration // not recorded /// 0031647 // regulation of protein stability // inferred from electronic annotation /// 0031647 // regulation of protein stability // not recorded /// 0032469 // endoplasmic reticulum calcium ion homeostasis // inferred from electronic annotation /// 0032469 // endoplasmic reticulum calcium ion homeostasis // not recorded /// 0032835 // glomerulus development // inferred from electronic annotation /// 0032835 // glomerulus development // not recorded /// 0032848 // negative regulation of cellular pH reduction // inferred from electronic annotation /// 0032848 // negative regulation of cellular pH reduction // not recorded /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0032880 // regulation of protein localization // inferred from electronic annotation /// 0032880 // regulation of protein localization // not recorded /// 0033033 // negative regulation of myeloid cell apoptosis // inferred from electronic annotation /// 0033033 // negative regulation of myeloid cell apoptosis // not recorded /// 0033077 // T cell differentiation in thymus // inferred from electronic annotation /// 0033077 // T cell differentiation in thymus // not recorded /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033138 // positive regulation of peptidyl-serine phosphorylation // not recorded /// 0033591 // response to L-ascorbic acid // inferred from expression pattern /// 0033689 // negative regulation of osteoblast proliferation // inferred from electronic annotation /// 0033689 // negative regulation of osteoblast proliferation // not recorded /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0034097 // response to cytokine stimulus // not recorded /// 0034097 // response to cytokine stimulus // inferred from electronic annotation /// 0034349 // glial cell apoptosis // inferred from expression pattern /// 0035094 // response to nicotine // inferred from expression pattern /// 0035094 // response to nicotine // not recorded /// 0035094 // response to nicotine // inferred from electronic annotation /// 0035265 // organ growth // inferred from electronic annotation /// 0035265 // organ growth // not recorded /// 0040007 // growth // not recorded /// 0040007 // growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0042100 // B cell proliferation // inferred from electronic annotation /// 0042100 // B cell proliferation // not recorded /// 0042221 // response to chemical stimulus // not recorded /// 0042221 // response to chemical stimulus // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0043029 // T cell homeostasis // inferred from electronic annotation /// 0043029 // T cell homeostasis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043067 // regulation of programmed cell death // not recorded /// 0043067 // regulation of programmed cell death // inferred from electronic annotation /// 0043085 // positive regulation of catalytic activity // inferred from electronic annotation /// 0043085 // positive regulation of catalytic activity // not recorded /// 0043375 // CD8-positive, alpha-beta T cell lineage commitment // inferred from electronic annotation /// 0043375 // CD8-positive, alpha-beta T cell lineage commitment // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0043473 // pigmentation // not recorded /// 0043473 // pigmentation // inferred from electronic annotation /// 0043496 // regulation of protein homodimerization activity // inferred from electronic annotation /// 0043496 // regulation of protein homodimerization activity // not recorded /// 0043497 // regulation of protein heterodimerization activity // inferred from electronic annotation /// 0043497 // regulation of protein heterodimerization activity // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043583 // ear development // inferred from electronic annotation /// 0043583 // ear development // not recorded /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045069 // regulation of viral genome replication // inferred from electronic annotation /// 0045069 // regulation of viral genome replication // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0045636 // positive regulation of melanocyte differentiation // inferred from electronic annotation /// 0045636 // positive regulation of melanocyte differentiation // not recorded /// 0045930 // negative regulation of mitotic cell cycle // inferred from electronic annotation /// 0045930 // negative regulation of mitotic cell cycle // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0046671 // negative regulation of retinal cell programmed cell death // inferred from electronic annotation /// 0046671 // negative regulation of retinal cell programmed cell death // not recorded /// 0046688 // response to copper ion // inferred from expression pattern /// 0046902 // regulation of mitochondrial membrane permeability // not recorded /// 0046902 // regulation of mitochondrial membrane permeability // inferred from sequence or structural similarity /// 0046902 // regulation of mitochondrial membrane permeability // inferred from electronic annotation /// 0048041 // focal adhesion assembly // inferred from electronic annotation /// 0048041 // focal adhesion assembly // not recorded /// 0048066 // developmental pigmentation // not recorded /// 0048066 // developmental pigmentation // inferred from electronic annotation /// 0048070 // regulation of developmental pigmentation // not recorded /// 0048070 // regulation of developmental pigmentation // inferred from electronic annotation /// 0048087 // positive regulation of developmental pigmentation // inferred from electronic annotation /// 0048087 // positive regulation of developmental pigmentation // not recorded /// 0048536 // spleen development // inferred from electronic annotation /// 0048536 // spleen development // not recorded /// 0048538 // thymus development // inferred from electronic annotation /// 0048538 // thymus development // not recorded /// 0048545 // response to steroid hormone stimulus // not recorded /// 0048545 // response to steroid hormone stimulus // inferred from electronic annotation /// 0048546 // digestive tract morphogenesis // not recorded /// 0048589 // developmental growth // inferred from electronic annotation /// 0048589 // developmental growth // not recorded /// 0048599 // oocyte development // inferred from electronic annotation /// 0048599 // oocyte development // not recorded /// 0048743 // positive regulation of skeletal muscle fiber development // inferred from electronic annotation /// 0048743 // positive regulation of skeletal muscle fiber development // not recorded /// 0048753 // pigment granule organization // inferred from electronic annotation /// 0048753 // pigment granule organization // not recorded /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0050790 // regulation of catalytic activity // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from electronic annotation /// 0051402 // neuron apoptosis // not recorded /// 0051402 // neuron apoptosis // inferred from electronic annotation /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern /// 0051593 // response to folic acid // inferred from expression pattern /// 0051607 // defense response to virus // inferred from electronic annotation /// 0051607 // defense response to virus // not recorded /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded /// 0051881 // regulation of mitochondrial membrane potential // not recorded /// 0051881 // regulation of mitochondrial membrane potential // inferred from sequence or structural similarity /// 0051881 // regulation of mitochondrial membrane potential // inferred from electronic annotation /// 0051924 // regulation of calcium ion transport // inferred from electronic annotation /// 0051924 // regulation of calcium ion transport // not recorded /// 0070059 // apoptosis in response to endoplasmic reticulum stress // inferred from electronic annotation /// 0070059 // apoptosis in response to endoplasmic reticulum stress // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded /// 0031966 // mitochondrial membrane // not recorded /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0043209 // myelin sheath // inferred from electronic annotation /// 0043209 // myelin sheath // not recorded 0002020 // protease binding // inferred from electronic annotation /// 0002020 // protease binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0019903 // protein phosphatase binding // not recorded /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0051400 // BH domain binding // inferred from physical interaction /// 0051434 // BH3 domain binding // inferred from electronic annotation /// 0051434 // BH3 domain binding // not recorded /// 0051721 // protein phosphatase 2A binding // inferred from electronic annotation /// 0051721 // protein phosphatase 2A binding // not recorded 1387612_at NM_013075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013075.1 /DB_XREF=gi:6981039 /GEN=Hoxa1 /FEA=FLmRNA /CNT=2 /TID=Rn.9780.1 /TIER=FL /STK=2 /UG=Rn.9780 /LL=25607 /DEF=Rattus norvegicus Homeo box A1 (Hoxa1), mRNA. /PROD=homeo box A1 /FL=gb:U93092.1 gb:NM_013075.1 NM_013075 homeo box A1 Hoxa1 25607 NM_013075 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0008045 // motor axon guidance // inferred from electronic annotation /// 0008045 // motor axon guidance // not recorded /// 0009653 // anatomical structure morphogenesis // not recorded /// 0009653 // anatomical structure morphogenesis // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0021569 // rhombomere 3 development // inferred from electronic annotation /// 0021569 // rhombomere 3 development // not recorded /// 0021570 // rhombomere 4 development // inferred from electronic annotation /// 0021570 // rhombomere 4 development // not recorded /// 0021571 // rhombomere 5 development // inferred from electronic annotation /// 0021571 // rhombomere 5 development // not recorded /// 0021612 // facial nerve structural organization // inferred from electronic annotation /// 0021612 // facial nerve structural organization // not recorded /// 0021754 // facial nucleus development // inferred from electronic annotation /// 0021754 // facial nucleus development // not recorded /// 0021953 // central nervous system neuron differentiation // inferred from electronic annotation /// 0021953 // central nervous system neuron differentiation // not recorded /// 0030902 // hindbrain development // inferred from electronic annotation /// 0030902 // hindbrain development // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048646 // anatomical structure formation involved in morphogenesis // inferred from electronic annotation /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1387613_at NM_023968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023968.1 /DB_XREF=gi:13027421 /GEN=Npy2r /FEA=FLmRNA /CNT=2 /TID=Rn.64505.1 /TIER=FL /STK=2 /UG=Rn.64505 /LL=66024 /DEF=Rattus norvegicus neuropeptide Ypeptide YY-Y2 receptor (Npy2r), mRNA. /PROD=neuropeptide Ypeptide YY-Y2 receptor /FL=gb:NM_023968.1 gb:AY004257.1 NM_023968 neuropeptide Y receptor Y2 Npy2r 66024 NM_023968 0001662 // behavioral fear response // inferred from mutant phenotype /// 0002793 // positive regulation of peptide secretion // inferred from direct assay /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007263 // nitric oxide mediated signal transduction // inferred from mutant phenotype /// 0007268 // synaptic transmission // not recorded /// 0030818 // negative regulation of cAMP biosynthetic process // inferred from mutant phenotype /// 0031645 // negative regulation of neurological system process // inferred from direct assay /// 0033603 // positive regulation of dopamine secretion // inferred from mutant phenotype /// 0042755 // eating behavior // inferred from direct assay /// 0045785 // positive regulation of cell adhesion // inferred from mutant phenotype /// 0045987 // positive regulation of smooth muscle contraction // inferred from mutant phenotype /// 0046010 // positive regulation of circadian sleep/wake cycle, non-REM sleep // inferred from direct assay /// 0046903 // secretion // inferred from mutant phenotype /// 0050805 // negative regulation of synaptic transmission // inferred from direct assay /// 0051048 // negative regulation of secretion // inferred from mutant phenotype /// 0051930 // regulation of sensory perception of pain // inferred from direct assay /// 0051967 // negative regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0001601 // peptide YY receptor activity // inferred from direct assay /// 0001601 // peptide YY receptor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004983 // neuropeptide Y receptor activity // inferred from direct assay /// 0004983 // neuropeptide Y receptor activity // not recorded /// 0004983 // neuropeptide Y receptor activity // inferred from electronic annotation 1387614_at NM_013041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013041.1 /DB_XREF=gi:6981617 /GEN=Sycp3 /FEA=FLmRNA /CNT=2 /TID=Rn.34889.1 /TIER=FL /STK=2 /UG=Rn.34889 /LL=25561 /DEF=Rattus norvegicus Synaptonemal complex protein 3 (Sycp3), mRNA. /PROD=synaptonemal complex protein 3 /FL=gb:NM_013041.1 NM_013041 synaptonemal complex protein 3 Sycp3 25561 NM_013041 0000705 // achiasmate meiosis I // inferred from electronic annotation /// 0000705 // achiasmate meiosis I // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007066 // female meiosis sister chromatid cohesion // inferred from electronic annotation /// 0007066 // female meiosis sister chromatid cohesion // not recorded /// 0007067 // mitosis // inferred from electronic annotation /// 0007067 // mitosis // not recorded /// 0007126 // meiosis // inferred from electronic annotation /// 0007126 // meiosis // not recorded /// 0007129 // synapsis // not recorded /// 0007129 // synapsis // inferred from electronic annotation /// 0007130 // synaptonemal complex assembly // inferred from electronic annotation /// 0007130 // synaptonemal complex assembly // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0016321 // female meiosis chromosome segregation // inferred from electronic annotation /// 0016321 // female meiosis chromosome segregation // not recorded /// 0035093 // spermatogenesis, exchange of chromosomal proteins // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0051301 // cell division // inferred from electronic annotation 0000793 // condensed chromosome // not recorded /// 0000793 // condensed chromosome // inferred from electronic annotation /// 0000794 // condensed nuclear chromosome // not recorded /// 0000794 // condensed nuclear chromosome // inferred from electronic annotation /// 0000795 // synaptonemal complex // not recorded /// 0000795 // synaptonemal complex // inferred from electronic annotation /// 0000800 // lateral element // inferred from electronic annotation /// 0000800 // lateral element // not recorded /// 0000802 // transverse filament // inferred from electronic annotation /// 0000802 // transverse filament // not recorded /// 0001673 // male germ cell nucleus // inferred from electronic annotation /// 0001673 // male germ cell nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1387615_at NM_057156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057156.1 /DB_XREF=gi:16924021 /GEN=Siat8b /FEA=FLmRNA /CNT=2 /TID=Rn.44391.1 /TIER=FL /STK=2 /UG=Rn.44391 /LL=117523 /DEF=Rattus norvegicus sialyltransferase 8 (alpha-2, 8-sialytransferase) B (Siat8b), mRNA. /PROD=sialyltransferase 8 (alpha-2,8-sialytransferase) B /FL=gb:NM_057156.1 gb:L13445.1 NM_057156 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 St8sia2 117523 NM_057156 0006486 // protein glycosylation // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation 0003828 // alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity // inferred from electronic annotation /// 0003828 // alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity // not recorded /// 0008373 // sialyltransferase activity // traceable author statement /// 0008373 // sialyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1387616_at NM_031317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031317.1 /DB_XREF=gi:13786135 /GEN=Pdgfc /FEA=FLmRNA /CNT=2 /TID=Rn.64626.1 /TIER=FL /STK=2 /UG=Rn.64626 /LL=79429 /DEF=Rattus norvegicus platelet-derived growth factor, C polypeptide (Pdgfc), mRNA. /PROD=fallotein /FL=gb:NM_031317.1 gb:AB033830.1 NM_031317 platelet derived growth factor C Pdgfc 79429 NM_031317 0007171 // activation of transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0007171 // activation of transmembrane receptor protein tyrosine kinase activity // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // not recorded /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0048008 // platelet-derived growth factor receptor signaling pathway // not recorded /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation 0000139 // Golgi membrane // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005161 // platelet-derived growth factor receptor binding // inferred from electronic annotation /// 0005161 // platelet-derived growth factor receptor binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043498 // cell surface binding // inferred from electronic annotation /// 0043498 // cell surface binding // not recorded 1387617_at NM_057208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057208.1 /DB_XREF=gi:17105361 /GEN=Tpm3 /FEA=FLmRNA /CNT=2 /TID=Rn.37575.1 /TIER=FL /STK=2 /UG=Rn.37575 /LL=117557 /DEF=Rattus norvegicus tropomyosin 3, gamma (Tpm3), mRNA. /PROD=tropomyosin 3, gamma /FL=gb:L24776.1 gb:NM_057208.1 NM_057208 tropomyosin 3, gamma Tpm3 117557 NM_057208 /// NM_173111 0007420 // brain development // inferred from expression pattern 0002102 // podosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1387618_at NM_053733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053733.1 /DB_XREF=gi:16758549 /GEN=Bcl2l10 /FEA=FLmRNA /CNT=2 /TID=Rn.67084.1 /TIER=FL /STK=2 /UG=Rn.67084 /LL=114552 /DEF=Rattus norvegicus BCL2-like 10 (apoptosis facilitator) (Bcl2l10), mRNA. /PROD=BCL2-like 10 (apoptosis facilitator) /FL=gb:NM_053733.1 gb:AY029163.1 NM_053733 BCL2-like 10 (apoptosis facilitator) Bcl2l10 114552 NM_053733 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // non-traceable author statement /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387619_at NM_133381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133381.1 /DB_XREF=gi:19173733 /GEN=Crebbp /FEA=FLmRNA /CNT=2 /TID=Rn.81028.1 /TIER=FL /STK=2 /UG=Rn.81028 /DEF=Rattus norvegicus Creb binding protein (CBP) (Crebbp), mRNA. /PROD=Creb binding protein (CBP) /FL=gb:NM_133381.1 gb:AB066219.1 NM_133381 CREB binding protein Crebbp 54244 NM_133381 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from direct assay /// 0016573 // histone acetylation // inferred from direct assay /// 0016573 // histone acetylation // not recorded /// 0016573 // histone acetylation // inferred from electronic annotation /// 0016573 // histone acetylation // inferred from sequence or structural similarity /// 0018076 // N-terminal peptidyl-lysine acetylation // not recorded /// 0018076 // N-terminal peptidyl-lysine acetylation // inferred from electronic annotation /// 0030718 // germ-line stem cell maintenance // not recorded /// 0030718 // germ-line stem cell maintenance // inferred from electronic annotation /// 0033261 // regulation of S phase // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from direct assay /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0000123 // histone acetyltransferase complex // not recorded /// 0000123 // histone acetyltransferase complex // inferred from electronic annotation /// 0000940 // condensed chromosome outer kinetochore // not recorded /// 0000940 // condensed chromosome outer kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred by curator /// 0005667 // transcription factor complex // inferred from direct assay /// 0005667 // transcription factor complex // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0016604 // nuclear body // not recorded /// 0016604 // nuclear body // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0002039 // p53 binding // not recorded /// 0002039 // p53 binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003712 // transcription cofactor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0003713 // transcription coactivator activity // traceable author statement /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from direct assay /// 0004402 // histone acetyltransferase activity // not recorded /// 0004402 // histone acetyltransferase activity // traceable author statement /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016407 // acetyltransferase activity // not recorded /// 0016407 // acetyltransferase activity // inferred from electronic annotation /// 0016407 // acetyltransferase activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0042975 // peroxisome proliferator activated receptor binding // inferred from direct assay /// 0046332 // SMAD binding // inferred from physical interaction /// 0051577 // MyoD binding // not recorded /// 0051577 // MyoD binding // inferred from electronic annotation /// 0051577 // MyoD binding // inferred from sequence or structural similarity 1387620_a_at NM_022630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022630.1 /DB_XREF=gi:12018321 /GEN=AF198087 /FEA=FLmRNA /CNT=2 /TID=Rn.48747.1 /TIER=FL /STK=2 /UG=Rn.48747 /LL=64565 /DEF=Rattus norvegicus adrenal secretory serine protease precursor (AF198087), mRNA. /PROD=adrenal secretory serine protease precursor /FL=gb:NM_022630.1 gb:AF198087.1 NM_022630 transmembrane protease, serine 11d Tmprss11d 64565 NM_001033652 /// NM_022630 0006508 // proteolysis // inferred from electronic annotation /// 0040008 // regulation of growth // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from direct assay /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387621_at NM_013049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013049.1 /DB_XREF=gi:6981687 /GEN=Tnfrsf4 /FEA=FLmRNA /CNT=2 /TID=Rn.48883.1 /TIER=FL /STK=2 /UG=Rn.48883 /LL=25572 /DEF=Rattus norvegicus tumor necrosis factor receptor superfamily, member 4 (Tnfrsf4), mRNA. /PROD=tumor necrosis factor receptor superfamily,member 4 /FL=gb:NM_013049.1 NM_013049 tumor necrosis factor receptor superfamily, member 4 Tnfrsf4 25572 NM_013049 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0006968 // cellular defense response // not recorded /// 0006968 // cellular defense response // traceable author statement /// 0006968 // cellular defense response // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // not recorded /// 0032582 // negative regulation of gene-specific transcription // inferred from electronic annotation /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0033209 // tumor necrosis factor-mediated signaling pathway // not recorded /// 0042098 // T cell proliferation // inferred from mutant phenotype /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0043433 // negative regulation of transcription factor activity // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0045859 // regulation of protein kinase activity // inferred from electronic annotation /// 0045859 // regulation of protein kinase activity // not recorded /// 0050710 // negative regulation of cytokine secretion // inferred from electronic annotation /// 0050710 // negative regulation of cytokine secretion // not recorded /// 0051024 // positive regulation of immunoglobulin secretion // inferred from electronic annotation /// 0051024 // positive regulation of immunoglobulin secretion // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // inferred from mutant phenotype /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005031 // tumor necrosis factor receptor activity // not recorded /// 0005031 // tumor necrosis factor receptor activity // traceable author statement /// 0005031 // tumor necrosis factor receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1387622_at NM_021849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021849.1 /DB_XREF=gi:11177883 /GEN=Rfng /FEA=FLmRNA /CNT=2 /TID=Rn.44231.1 /TIER=FL /STK=2 /UG=Rn.44231 /LL=60433 /DEF=Rattus norvegicus radical fringe gene homolog (Rfng), mRNA. /PROD=radical fringe gene homolog /FL=gb:AB016486.1 gb:NM_021849.1 NM_021849 RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase Rfng 60433 NM_021849 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045746 // negative regulation of Notch signaling pathway // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0033829 // O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity // inferred from electronic annotation 1387623_at NM_031123 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031123.1 /DB_XREF=gi:13592094 /GEN=Stc1 /FEA=FLmRNA /CNT=2 /TID=Rn.10647.1 /TIER=FL /STK=2 /UG=Rn.10647 /LL=81801 /DEF=Rattus norvegicus stanniocalcin 1 (Stc1), mRNA. /PROD=stanniocalcin 1 /FL=gb:U62667.1 gb:NM_031123.1 NM_031123 stanniocalcin 1 Stc1 81801 NM_031123 0001503 // ossification // inferred from direct assay /// 0006874 // cellular calcium ion homeostasis // traceable author statement /// 0007566 // embryo implantation // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0033280 // response to vitamin D // inferred from expression pattern /// 0046697 // decidualization // inferred from expression pattern /// 0071320 // cellular response to cAMP // inferred from expression pattern /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay 0005179 // hormone activity // inferred from electronic annotation 1387624_at NM_031777 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031777.1 /DB_XREF=gi:13929095 /GEN=Usf1 /FEA=FLmRNA /CNT=2 /TID=Rn.37514.1 /TIER=FL /STK=2 /UG=Rn.37514 /LL=83586 /DEF=Rattus norvegicus upstream transcription factor 1 (Usf1), mRNA. /PROD=upstream transcription factor 1 /FL=gb:AF026476.1 gb:NM_031777.1 NM_031777 upstream transcription factor 1 Usf1 83586 NM_031777 0000432 // positive regulation of transcription from RNA polymerase II promoter by glucose // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0006006 // glucose metabolic process // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0019086 // late viral mRNA transcription // inferred from electronic annotation /// 0019086 // late viral mRNA transcription // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded /// 0043425 // bHLH transcription factor binding // inferred from electronic annotation /// 0043425 // bHLH transcription factor binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1387625_at NM_013104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013104.1 /DB_XREF=gi:6981089 /GEN=Igfbp6 /FEA=FLmRNA /CNT=2 /TID=Affx.1.14 /TIER=FL /STK=2 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus Insulin-like growth factor binding protein 6 (Igfbp6), mRNA. /PROD=insulin-like growth factor binding protein 6 /FL=gb:NM_013104.1 gb:M69055.1 NM_013104 insulin-like growth factor binding protein 6 Igfbp6 25641 NM_013104 0001558 // regulation of cell growth // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation /// 0031994 // insulin-like growth factor I binding // inferred from physical interaction /// 0031995 // insulin-like growth factor II binding // inferred from physical interaction /// 0031995 // insulin-like growth factor II binding // traceable author statement 1387626_at NM_024158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024158.1 /DB_XREF=gi:13162354 /GEN=Dck /FEA=FLmRNA /CNT=2 /TID=Rn.10058.1 /TIER=FL /STK=2 /UG=Rn.10058 /LL=79127 /DEF=Rattus norvegicus deoxycytidine kinase (Dck), mRNA. /PROD=deoxycytidine kinase /FL=gb:NM_024158.1 gb:L33894.1 NM_024158 deoxycytidine kinase Dck 79127 NM_024158 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0017144 // drug metabolic process // inferred from direct assay /// 0046092 // deoxycytidine metabolic process // inferred from direct assay /// 0046092 // deoxycytidine metabolic process // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0004137 // deoxycytidine kinase activity // inferred from direct assay /// 0004137 // deoxycytidine kinase activity // inferred from mutant phenotype /// 0004137 // deoxycytidine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0032548 // pyrimidine deoxyribonucleoside binding // inferred from direct assay /// 0032548 // pyrimidine deoxyribonucleoside binding // inferred from mutant phenotype 1387627_at NM_020081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020081.1 /DB_XREF=gi:11464988 /GEN=LOC56822 /FEA=FLmRNA /CNT=2 /TID=Rn.48674.1 /TIER=FL /STK=2 /UG=Rn.48674 /LL=56822 /DEF=Rattus norvegicus membrane glycoprotein (LOC56822), mRNA. /PROD=membrane glycoprotein /FL=gb:NM_020081.1 gb:D50558.1 NM_020081 CD86 molecule Cd86 56822 NM_020081 0001878 // response to yeast // inferred from expression pattern /// 0002224 // toll-like receptor signaling pathway // not recorded /// 0002224 // toll-like receptor signaling pathway // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0034341 // response to interferon-gamma // inferred from expression pattern /// 0042098 // T cell proliferation // inferred from direct assay /// 0042110 // T cell activation // inferred from direct assay /// 0042113 // B cell activation // not recorded /// 0042113 // B cell activation // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1387628_at NM_023995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023995.1 /DB_XREF=gi:13027462 /GEN=T2R4 /FEA=FLmRNA /CNT=2 /TID=Rn.48784.1 /TIER=FL /STK=2 /UG=Rn.48784 /LL=78981 /DEF=Rattus norvegicus taste receptor T2R4 (T2R4), mRNA. /PROD=taste receptor T2R4 /FL=gb:NM_023995.1 gb:AF227142.1 NM_023995 taste receptor, type 2, member 107 Tas2r107 78981 NM_023995 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0008527 // taste receptor activity // traceable author statement 1387629_at NM_022261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022261.1 /DB_XREF=gi:11560076 /GEN=LOC64027 /FEA=FLmRNA /CNT=2 /TID=Rn.53996.1 /TIER=FL /STK=2 /UG=Rn.53996 /LL=64027 /DEF=Rattus norvegicus zetin 1 (LOC64027), mRNA. /PROD=zetin 1 /FL=gb:AF245225.1 gb:NM_022261.1 NM_022261 B-box and SPRY domain containing Bspry 64027 NM_022261 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from mutant phenotype /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387630_at NM_134382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134382.1 /DB_XREF=gi:19705492 /GEN=rELO1 /FEA=FLmRNA /CNT=2 /TID=Rn.81068.1 /TIER=FL /STK=2 /UG=Rn.81068 /DEF=Rattus norvegicus fatty acid elongase 1 (rELO1), mRNA. /PROD=fatty acid elongase 1 /FL=gb:NM_134382.1 gb:AB071985.1 NM_134382 ELOVL family member 5, elongation of long chain fatty acids (yeast) Elovl5 171400 NM_134382 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1387631_at NM_024390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024390.1 /DB_XREF=gi:13242298 /GEN=Hpgd /FEA=FLmRNA /CNT=2 /TID=Rn.9788.1 /TIER=FL /STK=2 /UG=Rn.9788 /LL=79242 /DEF=Rattus norvegicus NAD-dependent 15-hydroxyprostaglandin dehydrogenase (Hpgd), mRNA. /PROD=NAD-dependent 15-hydroxyprostaglandindehydrogenase /FL=gb:NM_024390.1 gb:U44750.1 NM_024390 hydroxyprostaglandin dehydrogenase 15 (NAD) Hpgd 79242 NM_024390 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006693 // prostaglandin metabolic process // not recorded /// 0006693 // prostaglandin metabolic process // inferred from sequence or structural similarity /// 0006693 // prostaglandin metabolic process // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from sequence or structural similarity /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007565 // female pregnancy // not recorded /// 0007565 // female pregnancy // inferred from sequence or structural similarity /// 0007565 // female pregnancy // inferred from electronic annotation /// 0007567 // parturition // not recorded /// 0007567 // parturition // inferred from sequence or structural similarity /// 0007567 // parturition // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // not recorded /// 0045786 // negative regulation of cell cycle // inferred from sequence or structural similarity /// 0045786 // negative regulation of cell cycle // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003824 // catalytic activity // not recorded /// 0003824 // catalytic activity // inferred from sequence or structural similarity /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004957 // prostaglandin E receptor activity // not recorded /// 0004957 // prostaglandin E receptor activity // inferred from sequence or structural similarity /// 0004957 // prostaglandin E receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016404 // 15-hydroxyprostaglandin dehydrogenase (NAD+) activity // inferred from direct assay /// 0016404 // 15-hydroxyprostaglandin dehydrogenase (NAD+) activity // not recorded /// 0016404 // 15-hydroxyprostaglandin dehydrogenase (NAD+) activity // inferred from sequence or structural similarity /// 0016404 // 15-hydroxyprostaglandin dehydrogenase (NAD+) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0051287 // NAD or NADH binding // not recorded /// 0051287 // NAD or NADH binding // inferred from sequence or structural similarity /// 0051287 // NAD or NADH binding // inferred from electronic annotation /// 0070403 // NAD binding // not recorded /// 0070403 // NAD binding // inferred from sequence or structural similarity /// 0070403 // NAD binding // inferred from electronic annotation 1387632_at NM_022271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022271.1 /DB_XREF=gi:11560090 /GEN=LOC64038 /FEA=FLmRNA /CNT=2 /TID=Rn.54436.1 /TIER=FL /STK=2 /UG=Rn.54436 /LL=64038 /DEF=Rattus norvegicus sertolin (LOC64038), mRNA. /PROD=sertolin /FL=gb:NM_022271.1 gb:AF107727.2 NM_022271 sertolin LOC64038 64038 NM_022271 0007283 // spermatogenesis // inferred from expression pattern 0005829 // cytosol // inferred from direct assay 1387633_at NM_031619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031619.1 /DB_XREF=gi:13928847 /GEN=Prg2 /FEA=FLmRNA /CNT=2 /TID=Rn.10674.1 /TIER=FL /STK=2 /UG=Rn.10674 /LL=58826 /DEF=Rattus norvegicus proteoglycan 2, bone marrow (Prg2), mRNA. /PROD=proteoglycan 2, bone marrow /FL=gb:NM_031619.1 gb:D50568.1 NM_031619 proteoglycan 2, bone marrow Prg2 58826 NM_031619 0006955 // immune response // inferred from electronic annotation /// 0042742 // defense response to bacterium // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0008201 // heparin binding // non-traceable author statement 1387634_a_at NM_019154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019154.1 /DB_XREF=gi:9506380 /GEN=Amel /FEA=FLmRNA /CNT=2 /TID=Rn.11368.1 /TIER=FL /STK=2 /UG=Rn.11368 /LL=29160 /DEF=Rattus norvegicus amelogenin (Amel), mRNA. /PROD=amelogenin /FL=gb:NM_019154.1 gb:U67130.1 NM_019154 amelogenin X chromosome Amelx 29160 NM_019154 0007155 // cell adhesion // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from expression pattern /// 0008283 // cell proliferation // not recorded /// 0031214 // biomineral tissue development // inferred from electronic annotation /// 0034505 // tooth mineralization // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from expression pattern /// 0070166 // enamel mineralization // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005604 // basement membrane // not recorded /// 0005604 // basement membrane // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0030139 // endocytic vesicle // inferred from expression pattern /// 0031012 // extracellular matrix // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0030345 // structural constituent of tooth enamel // inferred from direct assay /// 0030345 // structural constituent of tooth enamel // not recorded /// 0030345 // structural constituent of tooth enamel // traceable author statement /// 0042802 // identical protein binding // inferred from direct assay /// 0042802 // identical protein binding // not recorded /// 0043498 // cell surface binding // not recorded /// 0046848 // hydroxyapatite binding // not recorded 1387635_at NM_032070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032070.1 /DB_XREF=gi:14091755 /GEN=Hmgic /FEA=FLmRNA /CNT=2 /TID=Rn.29981.1 /TIER=FL /STK=2 /UG=Rn.29981 /LL=84017 /DEF=Rattus norvegicus non-histone chromosomal architectural protein HMGI-C (Hmgic), mRNA. /PROD=non-histone chromosomal architectural proteinHMGI-C /FL=gb:U89695.1 gb:NM_032070.1 NM_032070 high mobility group AT-hook 2 Hmga2 84017 NM_032070 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from mutant phenotype /// 0033144 // negative regulation of steroid hormone receptor signaling pathway // inferred from direct assay /// 0046426 // negative regulation of JAK-STAT cascade // inferred from direct assay /// 0051091 // positive regulation of transcription factor activity // inferred from mutant phenotype 0000228 // nuclear chromosome // not recorded /// 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019899 // enzyme binding // inferred from physical interaction 1387636_a_at NM_134395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134395.1 /DB_XREF=gi:19705512 /GEN=Cdtw1 /FEA=FLmRNA /CNT=2 /TID=Rn.2630.1 /TIER=FL /STK=2 /UG=Rn.2630 /DEF=Rattus norvegicus P11 protein (Cdtw1), mRNA. /PROD=P11 protein /FL=gb:NM_134395.1 gb:AF083396.1 NM_134395 transmembrane protein 14C Tmem14c 171432 NM_001135169 /// NM_134395 0006783 // heme biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 1387637_a_at NM_022223 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022223.2 /DB_XREF=gi:19224656 /GEN=Fgf14 /FEA=FLmRNA /CNT=2 /TID=Rn.44476.1 /TIER=FL /STK=2 /UG=Rn.44476 /LL=63851 /DEF=Rattus norvegicus fibroblast growth factor 14 (Fgf14), mRNA. /PROD=fibroblast growth factor 14 /FL=gb:AB079500.1 gb:NM_022223.2 NM_022223 fibroblast growth factor 14 Fgf14 63851 NM_022223 0007254 // JNK cascade // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation 0005104 // fibroblast growth factor receptor binding // not recorded /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008201 // heparin binding // not recorded 1387638_a_at U90271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U90271.1 /DB_XREF=gi:4099838 /GEN=CTLA-4 /FEA=FLmRNA /CNT=1 /TID=Rn.10259.2 /TIER=FL /STK=1 /UG=Rn.10259 /LL=63835 /DEF=Rattus norvegicus CTLA-4 mRNA, complete cds. /PROD=CTLA-4 /FL=gb:U90271.1 U90271 cytotoxic T-lymphocyte-associated protein 4 Ctla4 63835 NM_031674 0006955 // immune response // inferred from electronic annotation /// 0042130 // negative regulation of T cell proliferation // inferred from mutant phenotype /// 0045590 // negative regulation of regulatory T cell differentiation // not recorded /// 0045590 // negative regulation of regulatory T cell differentiation // inferred from electronic annotation /// 0050777 // negative regulation of immune response // inferred from mutant phenotype 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0045334 // clathrin-coated endocytic vesicle // not recorded /// 0045334 // clathrin-coated endocytic vesicle // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004872 // receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction 1387639_at NM_017357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017357.1 /DB_XREF=gi:8393860 /GEN=NVP-2 /FEA=FLmRNA /CNT=2 /TID=Rn.34529.1 /TIER=FL /STK=2 /UG=Rn.34529 /LL=50872 /DEF=Rattus norvegicus neural visinin-like Ca2+-binding protein type 2 (NVP-2), mRNA. /PROD=neural visinin-like Ca2+-binding protein type 2 /FL=gb:D13125.1 gb:NM_017357.1 NM_017357 hippocalcin-like 4 Hpcal4 50872 NM_017357 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 0005246 // calcium channel regulator activity // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from physical interaction 1387640_at NM_130753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130753.1 /DB_XREF=gi:18543366 /GEN=Fgf15 /FEA=FLmRNA /CNT=2 /TID=Rn.81230.1 /TIER=FL /STK=2 /UG=Rn.81230 /DEF=Rattus norvegicus fibroblast growth factor 15 (Fgf15), mRNA. /PROD=fibroblast growth factor 15 /FL=gb:NM_130753.1 gb:AB078900.1 NM_130753 fibroblast growth factor 15 Fgf15 170582 NM_130753 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0046326 // positive regulation of glucose import // inferred from electronic annotation /// 0046326 // positive regulation of glucose import // not recorded /// 0046330 // positive regulation of JNK cascade // inferred from electronic annotation /// 0046330 // positive regulation of JNK cascade // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded /// 0070858 // negative regulation of bile acid biosynthetic process // inferred from electronic annotation /// 0070858 // negative regulation of bile acid biosynthetic process // not recorded 0005576 // extracellular region // not recorded 0005104 // fibroblast growth factor receptor binding // inferred from electronic annotation /// 0005104 // fibroblast growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation 1387641_at NM_022692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022692.1 /DB_XREF=gi:12083644 /GEN=Rab5a /FEA=FLmRNA /CNT=2 /TID=Rn.44477.1 /TIER=FL /STK=2 /UG=Rn.44477 /LL=64633 /DEF=Rattus norvegicus small GTP-binding protein rab5 (Rab5a), mRNA. /PROD=small GTP-binding protein rab5 /FL=gb:AF072935.1 gb:NM_022692.1 NM_022692 RAB5A, member RAS oncogene family Rab5a 64633 NM_022692 0006184 // GTP catabolic process // not recorded /// 0006897 // endocytosis // inferred from mutant phenotype /// 0006897 // endocytosis // not recorded /// 0006897 // endocytosis // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // non-traceable author statement /// 0031623 // receptor internalization // not recorded /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from mutant phenotype 0001726 // ruffle // not recorded /// 0001726 // ruffle // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0019717 // synaptosome // inferred from direct assay /// 0019717 // synaptosome // non-traceable author statement /// 0030139 // endocytic vesicle // not recorded /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0042589 // zymogen granule membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0019001 // guanyl nucleotide binding // not recorded /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0019003 // GDP binding // not recorded /// 0019003 // GDP binding // inferred from electronic annotation /// 0051021 // GDP-dissociation inhibitor binding // inferred from direct assay 1387642_at NM_130410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130410.1 /DB_XREF=gi:18426831 /GEN=Il23a /FEA=FLmRNA /CNT=2 /TID=Rn.81073.1 /TIER=FL /STK=2 /UG=Rn.81073 /DEF=Rattus norvegicus Interleukin 23, alpha subunit p19 (Il23a), mRNA. /PROD=Interleukin 23, alpha subunit p19 /FL=gb:AY055379.1 gb:NM_130410.1 NM_130410 Interleukin 23, alpha subunit p19 Il23a 155140 NM_130410 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0042098 // T cell proliferation // inferred from electronic annotation /// 0042098 // T cell proliferation // not recorded /// 0045087 // innate immune response // inferred from electronic annotation /// 0048771 // tissue remodeling // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387643_at NM_130752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130752.1 /DB_XREF=gi:18543364 /GEN=Fgf21 /FEA=FLmRNA /CNT=2 /TID=Rn.81231.1 /TIER=FL /STK=2 /UG=Rn.81231 /DEF=Rattus norvegicus fibroblast growth factor 21 (Fgf21), mRNA. /PROD=fibroblast growth factor 21 /FL=gb:AB078901.1 gb:NM_130752.1 NM_130752 fibroblast growth factor 21 Fgf21 170580 NM_130752 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0046326 // positive regulation of glucose import // inferred from electronic annotation /// 0046326 // positive regulation of glucose import // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded /// 0090080 // positive regulation of MAPKKK cascade by fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0090080 // positive regulation of MAPKKK cascade by fibroblast growth factor receptor signaling pathway // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation 1387644_at NM_022256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022256.1 /DB_XREF=gi:11560068 /GEN=Btc /FEA=FLmRNA /CNT=2 /TID=Rn.53987.1 /TIER=FL /STK=2 /UG=Rn.53987 /LL=64022 /DEF=Rattus norvegicus betacellulin (Btc), mRNA. /PROD=betacellulin /FL=gb:NM_022256.1 gb:AB028862.1 NM_022256 betacellulin Btc 64022 NM_022256 0003103 // positive regulation of diuresis // inferred from direct assay /// 0006260 // DNA replication // traceable author statement /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0030154 // cell differentiation // traceable author statement /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045597 // positive regulation of cell differentiation // inferred from mutant phenotype /// 0045840 // positive regulation of mitosis // inferred from direct assay /// 0048146 // positive regulation of fibroblast proliferation // inferred from direct assay 0005154 // epidermal growth factor receptor binding // inferred from direct assay /// 0008083 // growth factor activity // inferred from direct assay 1387645_at NM_019150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019150.1 /DB_XREF=gi:9507228 /GEN=Ucn /FEA=FLmRNA /CNT=2 /TID=Rn.10190.1 /TIER=FL /STK=2 /UG=Rn.10190 /LL=29151 /DEF=Rattus norvegicus urocortin (Ucn), mRNA. /PROD=urocortin /FL=gb:NM_019150.1 gb:U33935.1 NM_019150 urocortin Ucn 29151 NM_019150 0006954 // inflammatory response // inferred from expression pattern /// 0006979 // response to oxidative stress // inferred from direct assay /// 0007218 // neuropeptide signaling pathway // inferred from direct assay /// 0007565 // female pregnancy // inferred from expression pattern /// 0007611 // learning or memory // inferred from direct assay /// 0007631 // feeding behavior // inferred from mutant phenotype /// 0030157 // pancreatic juice secretion // inferred from direct assay /// 0030307 // positive regulation of cell growth // inferred from direct assay /// 0031175 // neuron projection development // inferred from direct assay /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032755 // positive regulation of interleukin-6 production // inferred from direct assay /// 0032967 // positive regulation of collagen biosynthetic process // inferred from direct assay /// 0042756 // drinking behavior // inferred from mutant phenotype /// 0043526 // neuroprotection // inferred from direct assay /// 0045727 // positive regulation of translation // inferred from direct assay /// 0045740 // positive regulation of DNA replication // inferred from direct assay /// 0045776 // negative regulation of blood pressure // inferred from direct assay /// 0045909 // positive regulation of vasodilation // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051966 // regulation of synaptic transmission, glutamatergic // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay 0001664 // G-protein-coupled receptor binding // inferred from direct assay /// 0005179 // hormone activity // inferred from electronic annotation 1387646_a_at NM_022210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022210.1 /DB_XREF=gi:11559987 /GEN=Max /FEA=FLmRNA /CNT=2 /TID=Rn.44443.1 /TIER=FL /STK=2 /UG=Rn.44443 /LL=60661 /DEF=Rattus norvegicus Max (Max), mRNA. /PROD=Max /FL=gb:D14447.1 gb:NM_022210.1 NM_022210 MYC associated factor X Max 60661 NM_022210 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 0006461 // protein complex assembly // inferred from direct assay /// 0009267 // cellular response to starvation // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010629 // negative regulation of gene expression // inferred from direct assay /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048678 // response to axon injury // inferred from expression pattern /// 0051402 // neuron apoptosis // inferred from expression pattern /// 0060041 // retina development in camera-type eye // inferred from expression pattern /// 0071375 // cellular response to peptide hormone stimulus // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016605 // PML body // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0071339 // MLL1 complex // not recorded /// 0071339 // MLL1 complex // inferred from sequence or structural similarity /// 0071339 // MLL1 complex // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1387647_at NM_057129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057129.1 /DB_XREF=gi:16923979 /GEN=Tff1 /FEA=FLmRNA /CNT=2 /TID=Rn.10715.1 /TIER=FL /STK=2 /UG=Rn.10715 /LL=117270 /DEF=Rattus norvegicus trefoil factor 1 (Tff1), mRNA. /PROD=trefoil factor 1 /FL=gb:D83231.1 gb:NM_057129.1 NM_057129 trefoil factor 1 Tff1 117270 NM_057129 0006950 // response to stress // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010039 // response to iron ion // inferred from expression pattern /// 0030154 // cell differentiation // not recorded /// 0030277 // maintenance of gastrointestinal epithelium // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // not recorded /// 0042060 // wound healing // traceable author statement /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation 1387648_at NM_022214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022214.1 /DB_XREF=gi:11559995 /GEN=LOC60665 /FEA=FLmRNA /CNT=2 /TID=Rn.44449.1 /TIER=FL /STK=2 /UG=Rn.44449 /LL=60665 /DEF=Rattus norvegicus CXC chemokine LIX (LOC60665), mRNA. /PROD=CXC chemokine LIX /FL=gb:NM_022214.1 gb:U90448.1 NM_022214 chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2) Cxcl6 60665 NM_022214 0001816 // cytokine production // inferred from mutant phenotype /// 0006954 // inflammatory response // inferred from mutant phenotype /// 0006955 // immune response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from mutant phenotype /// 0008009 // chemokine activity // inferred from electronic annotation 1387649_at NM_021678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021678.1 /DB_XREF=gi:11067400 /GEN=LOC59314 /FEA=FLmRNA /CNT=2 /TID=Rn.42880.1 /TIER=FL /STK=2 /UG=Rn.42880 /LL=59314 /DEF=Rattus norvegicus CaM-KII inhibitory protein (LOC59314), mRNA. /PROD=CaM-KII inhibitory protein /FL=gb:NM_021678.1 gb:AF041854.1 NM_021678 calcium/calmodulin-dependent protein kinase II inhibitor 2 Camk2n2 59314 NM_021678 0048167 // regulation of synaptic plasticity // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0008427 // calcium-dependent protein kinase inhibitor activity // inferred from mutant phenotype /// 0019901 // protein kinase binding // inferred from mutant phenotype 1387650_at NM_138851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_138851.1 /DB_XREF=gi:20301995 /GEN=Prok1 /FEA=FLmRNA /CNT=2 /TID=Affx.1.17 /TIER=FL /STK=2 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus prokineticin 1 precursor (Prok1), mRNA. /PROD=prokineticin 1 precursor /FL=gb:AY089983.1 gb:NM_138851.1 NM_138851 prokineticin 1 Prok1 192205 NM_138851 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0001525 // angiogenesis // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0045765 // regulation of angiogenesis // not recorded /// 0045765 // regulation of angiogenesis // non-traceable author statement /// 0045765 // regulation of angiogenesis // inferred from electronic annotation /// 0051781 // positive regulation of cell division // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded 0008083 // growth factor activity // inferred from electronic annotation 1387651_at L07268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L07268.1 /DB_XREF=gi:203450 /GEN=CHIP28 /FEA=FLmRNA /CNT=40 /TID=Rn.1618.1 /TIER=FL /STK=1 /UG=Rn.1618 /LL=25240 /DEF=Rattus norvegicus water channel (CHIP28) mRNA, complete cds. /PROD=water channel /FL=gb:L07268.1 gb:NM_012778.1 L07268 aquaporin 1 Aqp1 25240 NM_012778 0003094 // glomerular filtration // inferred from electronic annotation /// 0003094 // glomerular filtration // not recorded /// 0003097 // renal water transport // not recorded /// 0006182 // cGMP biosynthetic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // not recorded /// 0006833 // water transport // inferred from mutant phenotype /// 0006833 // water transport // not recorded /// 0006833 // water transport // inferred from electronic annotation /// 0006884 // cell volume homeostasis // not recorded /// 0006972 // hyperosmotic response // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0010592 // positive regulation of lamellipodium assembly // inferred from mutant phenotype /// 0010634 // positive regulation of epithelial cell migration // inferred from mutant phenotype /// 0015670 // carbon dioxide transport // not recorded /// 0015696 // ammonium transport // not recorded /// 0015793 // glycerol transport // inferred from direct assay /// 0015793 // glycerol transport // not recorded /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0019233 // sensory perception of pain // not recorded /// 0019725 // cellular homeostasis // not recorded /// 0021670 // lateral ventricle development // inferred from expression pattern /// 0021670 // lateral ventricle development // not recorded /// 0021670 // lateral ventricle development // inferred from electronic annotation /// 0030104 // water homeostasis // inferred from electronic annotation /// 0030104 // water homeostasis // not recorded /// 0030157 // pancreatic juice secretion // not recorded /// 0030185 // nitric oxide transport // not recorded /// 0030335 // positive regulation of cell migration // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030950 // establishment or maintenance of actin cytoskeleton polarity // not recorded /// 0032940 // secretion by cell // inferred from electronic annotation /// 0032940 // secretion by cell // not recorded /// 0033326 // cerebrospinal fluid secretion // not recorded /// 0033363 // secretory granule organization // inferred from electronic annotation /// 0033363 // secretory granule organization // not recorded /// 0033554 // cellular response to stress // not recorded /// 0034644 // cellular response to UV // not recorded /// 0035377 // transepithelial water transport // not recorded /// 0035378 // carbon dioxide transmembrane transport // not recorded /// 0042060 // wound healing // inferred from electronic annotation /// 0042060 // wound healing // not recorded /// 0042476 // odontogenesis // not recorded /// 0042493 // response to drug // not recorded /// 0042538 // hyperosmotic salinity response // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // not recorded /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0044241 // lipid digestion // inferred from electronic annotation /// 0044241 // lipid digestion // not recorded /// 0045766 // positive regulation of angiogenesis // not recorded /// 0046878 // positive regulation of saliva secretion // not recorded /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // not recorded /// 0050891 // multicellular organismal water homeostasis // not recorded /// 0051458 // adrenocorticotropin secretion // inferred from electronic annotation /// 0051458 // adrenocorticotropin secretion // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070295 // renal water absorption // inferred from electronic annotation /// 0070295 // renal water absorption // not recorded /// 0070301 // cellular response to hydrogen peroxide // not recorded /// 0071241 // cellular response to inorganic substance // not recorded /// 0071260 // cellular response to mechanical stimulus // not recorded /// 0071280 // cellular response to copper ion // not recorded /// 0071288 // cellular response to mercury ion // not recorded /// 0071300 // cellular response to retinoic acid // not recorded /// 0071320 // cellular response to cAMP // not recorded /// 0071456 // cellular response to hypoxia // not recorded /// 0071472 // cellular response to salt stress // not recorded /// 0071474 // cellular hyperosmotic response // not recorded /// 0071549 // cellular response to dexamethasone stimulus // not recorded /// 0071732 // cellular response to nitric oxide // not recorded /// 0085018 // maintenance of symbiont-containing vacuole via substance secreted by host // not recorded 0000299 // integral to membrane of membrane fraction // inferred from electronic annotation /// 0000299 // integral to membrane of membrane fraction // not recorded /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005902 // microvillus // inferred from direct assay /// 0005903 // brush border // inferred from direct assay /// 0005903 // brush border // not recorded /// 0005903 // brush border // inferred from electronic annotation /// 0009925 // basal plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0020005 // symbiont-containing vacuole membrane // not recorded /// 0031526 // brush border membrane // not recorded /// 0031965 // nuclear membrane // not recorded /// 0032809 // neuronal cell body membrane // inferred from direct assay /// 0033267 // axon part // not recorded /// 0033267 // axon part // inferred from electronic annotation /// 0042383 // sarcolemma // not recorded /// 0043005 // neuron projection // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay /// 0045177 // apical part of cell // not recorded /// 0070062 // extracellular vesicular exosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // not recorded 0005215 // transporter activity // inferred from electronic annotation /// 0005223 // intracellular cGMP activated cation channel activity // not recorded /// 0005267 // potassium channel activity // not recorded /// 0005372 // water transmembrane transporter activity // not recorded /// 0005372 // water transmembrane transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0015079 // potassium ion transmembrane transporter activity // inferred from electronic annotation /// 0015079 // potassium ion transmembrane transporter activity // not recorded /// 0015168 // glycerol transmembrane transporter activity // inferred from direct assay /// 0015168 // glycerol transmembrane transporter activity // not recorded /// 0015250 // water channel activity // inferred from mutant phenotype /// 0015250 // water channel activity // not recorded /// 0022857 // transmembrane transporter activity // not recorded /// 0030184 // nitric oxide transmembrane transporter activity // not recorded /// 0035379 // carbon dioxide transmembrane transporter activity // not recorded /// 0051739 // ammonia transmembrane transporter activity // not recorded 1387652_at BI291249 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291249 /DB_XREF=gi:14950613 /DB_XREF=UI-R-CV2-cgn-c-08-0-UI.s1 /CLONE=UI-R-CV2-cgn-c-08-0-UI /FEA=FLmRNA /CNT=37 /TID=Rn.10988.1 /TIER=Stack /STK=27 /UG=Rn.10988 /LL=25700 /UG_GENE=Ide /UG_TITLE=Insulin degrading enzyme /FL=gb:NM_013159.1 BI291249 insulin degrading enzyme Ide 25700 NM_013159 0006508 // proteolysis // inferred from electronic annotation /// 0010815 // bradykinin catabolic process // not recorded /// 0010815 // bradykinin catabolic process // inferred from sequence or structural similarity /// 0010815 // bradykinin catabolic process // inferred from electronic annotation /// 0042447 // hormone catabolic process // inferred from direct assay /// 0043171 // peptide catabolic process // traceable author statement /// 0044257 // cellular protein catabolic process // inferred from direct assay /// 0045861 // negative regulation of proteolysis // inferred from direct assay /// 0050435 // beta-amyloid metabolic process // inferred from mutant phenotype /// 0050435 // beta-amyloid metabolic process // not recorded /// 0050435 // beta-amyloid metabolic process // inferred from sequence or structural similarity /// 0050435 // beta-amyloid metabolic process // inferred from electronic annotation /// 0051289 // protein homotetramerization // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from mutant phenotype 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005782 // peroxisomal matrix // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0031597 // cytosolic proteasome complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001540 // beta-amyloid binding // inferred from physical interaction /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from direct assay /// 0004222 // metalloendopeptidase activity // inferred from mutant phenotype /// 0004222 // metalloendopeptidase activity // not recorded /// 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from physical interaction /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0008233 // peptidase activity // traceable author statement /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from mutant phenotype /// 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0017046 // peptide hormone binding // inferred from physical interaction /// 0031626 // beta-endorphin binding // inferred from mutant phenotype /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0043559 // insulin binding // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation 1387653_at BI283853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283853 /DB_XREF=gi:14936005 /DB_XREF=UI-R-CX0s-ccx-e-03-0-UI.s1 /CLONE=UI-R-CX0s-ccx-e-03-0-UI /FEA=FLmRNA /CNT=33 /TID=Rn.2315.1 /TIER=Stack /STK=15 /UG=Rn.2315 /LL=64028 /UG_GENE=Tsnax /UG_TITLE=translin-associated factor X /FL=gb:NM_022262.1 gb:AF262357.1 BI283853 translin-associated factor X Tsnax 64028 NM_022262 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003697 // single-stranded DNA binding // traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement /// 0031687 // A2A adenosine receptor binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1387654_at NM_023092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023092.1 /DB_XREF=gi:12831208 /GEN=Myr2 /FEA=FLmRNA /CNT=31 /TID=Rn.55135.1 /TIER=FL /STK=1 /UG=Rn.55135 /LL=65261 /DEF=Rattus norvegicus unconventional myosin Myr2 I heavy chain (Myr2), mRNA. /PROD=unconventional myosin Myr2 I heavy chain /FL=gb:NM_023092.1 NM_023092 myosin IC-like /// myosin IC LOC100365624 /// Myo1c 100365624 /// 65261 NM_023092 /// XM_002724624 0006810 // transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0001725 // stress fiber // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005902 // microvillus // not recorded /// 0005903 // brush border // not recorded /// 0009925 // basal plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // not recorded /// 0016459 // myosin complex // inferred from electronic annotation /// 0031941 // filamentous actin // not recorded /// 0032420 // stereocilium // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0045160 // myosin I complex // not recorded /// 0060171 // stereocilium membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded 1387655_at AF189724 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF189724.1 /DB_XREF=gi:6007840 /FEA=FLmRNA /CNT=21 /TID=Rn.54439.1 /TIER=FL /STK=1 /UG=Rn.54439 /LL=24772 /UG_GENE=Sdf1 /DEF=Rattus norvegicus stromal cell-derived factor-1 alpha mRNA, complete cds. /PROD=stromal cell-derived factor-1 alpha /FL=gb:AF209976.1 gb:NM_022177.2 gb:AF189724.1 AF189724 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1) Cxcl12 24772 NM_001033882 /// NM_001033883 /// NM_022177 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001667 // ameboidal cell migration // inferred from electronic annotation /// 0001667 // ameboidal cell migration // not recorded /// 0001764 // neuron migration // inferred from direct assay /// 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0006955 // immune response // inferred from electronic annotation /// 0007281 // germ cell development // inferred from electronic annotation /// 0007281 // germ cell development // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0008045 // motor axon guidance // inferred from electronic annotation /// 0008045 // motor axon guidance // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008344 // adult locomotory behavior // inferred from mutant phenotype /// 0008354 // germ cell migration // inferred from electronic annotation /// 0008354 // germ cell migration // not recorded /// 0009314 // response to radiation // inferred from expression pattern /// 0009408 // response to heat // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0016477 // cell migration // traceable author statement /// 0022029 // telencephalon cell migration // inferred from mutant phenotype /// 0030334 // regulation of cell migration // not recorded /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030335 // positive regulation of cell migration // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from mutant phenotype /// 0033603 // positive regulation of dopamine secretion // inferred from direct assay /// 0042098 // T cell proliferation // inferred from electronic annotation /// 0042098 // T cell proliferation // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0048842 // positive regulation of axon extension involved in axon guidance // inferred from mutant phenotype /// 0050930 // induction of positive chemotaxis // inferred from electronic annotation /// 0050930 // induction of positive chemotaxis // not recorded /// 0051929 // positive regulation of calcium ion transport via voltage-gated calcium channel activity // inferred from direct assay /// 0090026 // positive regulation of monocyte chemotaxis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // not recorded /// 0008009 // chemokine activity // traceable author statement 1387656_at BE113640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113640 /DB_XREF=gi:8505745 /DB_XREF=UI-R-BJ1-awg-f-05-0-UI.s1 /CLONE=UI-R-BJ1-awg-f-05-0-UI /FEA=FLmRNA /CNT=34 /TID=Rn.32202.1 /TIER=Stack /STK=7 /UG=Rn.32202 /LL=24779 /UG_GENE=Slc4a1 /UG_TITLE=Solute carrier family 4, member 1, anion exchange protein 1 (kidney band 3) /FL=gb:AY030082.1 gb:NM_012651.1 BE113640 solute carrier family 4 (anion exchanger), member 1 Slc4a1 24779 NM_012651 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006820 // anion transport // not recorded /// 0006820 // anion transport // inferred from electronic annotation /// 0006821 // chloride transport // not recorded /// 0006821 // chloride transport // traceable author statement /// 0006821 // chloride transport // inferred from electronic annotation /// 0015701 // bicarbonate transport // traceable author statement /// 0034220 // ion transmembrane transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from sequence or structural similarity /// 0030018 // Z disc // inferred from direct assay /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // not recorded 0003779 // actin binding // inferred from physical interaction /// 0005215 // transporter activity // inferred from electronic annotation /// 0005452 // inorganic anion exchanger activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008509 // anion transmembrane transporter activity // inferred from electronic annotation /// 0015108 // chloride transmembrane transporter activity // inferred from electronic annotation /// 0015108 // chloride transmembrane transporter activity // not recorded /// 0015301 // anion:anion antiporter activity // not recorded /// 0015301 // anion:anion antiporter activity // inferred from electronic annotation /// 0030506 // ankyrin binding // inferred from electronic annotation /// 0030506 // ankyrin binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1387657_at AF083330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF083330.1 /DB_XREF=gi:3493136 /GEN=KIF3C /FEA=FLmRNA /CNT=16 /TID=Rn.10894.1 /TIER=FL /STK=1 /UG=Rn.10894 /LL=85248 /DEF=Rattus norvegicus kinesin-like protein KIF3C (KIF3C) mRNA, complete cds. /PROD=kinesin-like protein KIF3C /FL=gb:NM_053486.1 gb:AF083330.1 gb:AJ223599.1 AF083330 kinesin family member 3C Kif3c 85248 NM_053486 0007018 // microtubule-based movement // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1387658_at U93849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U93849.1 /DB_XREF=gi:2104702 /FEA=FLmRNA /CNT=20 /TID=Rn.10958.1 /TIER=FL+Stack /STK=9 /UG=Rn.10958 /LL=25435 /UG_GENE=Eef2k /DEF=Rattus norvegicus elongation factor-2 kinase mRNA, complete cds. /PROD=elongation factor-2 kinase /FL=gb:U93849.1 gb:NM_012947.1 U93849 eukaryotic elongation factor-2 kinase Eef2k 25435 NM_012947 0006468 // protein phosphorylation // inferred from electronic annotation 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004686 // elongation factor-2 kinase activity // inferred from mutant phenotype /// 0004686 // elongation factor-2 kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387659_at AF245172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF245172.1 /DB_XREF=gi:7533041 /GEN=Gda /FEA=FLmRNA /CNT=15 /TID=Rn.24783.1 /TIER=FL /STK=1 /UG=Rn.24783 /LL=83585 /DEF=Rattus norvegicus guanine deaminase (Gda) mRNA, complete cds. /PROD=guanine deaminase /FL=gb:AF026472.2 gb:AF245172.1 gb:NM_031776.1 AF245172 guanine deaminase Gda 83585 NM_031776 0050896 // response to stimulus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008892 // guanine deaminase activity // inferred from direct assay /// 0008892 // guanine deaminase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387660_at M25390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M25390.1 /DB_XREF=gi:204676 /FEA=FLmRNA /CNT=13 /TID=Rn.11394.1 /TIER=FL /STK=1 /UG=Rn.11394 /LL=24476 /UG_GENE=Iapp /UG_TITLE=Islet amyloid polypeptide /DEF=Rat islet amyloid polypeptide mRNA, complete cds. /FL=gb:J04544.1 gb:M25390.1 gb:NM_012586.1 M25390 islet amyloid polypeptide Iapp 24476 NM_012586 0006006 // glucose metabolic process // traceable author statement /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0019233 // sensory perception of pain // not recorded /// 0042755 // eating behavior // inferred from mutant phenotype /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045779 // negative regulation of bone resorption // inferred from electronic annotation /// 0045779 // negative regulation of bone resorption // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0030141 // stored secretory granule // traceable author statement /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded 0005179 // hormone activity // inferred from electronic annotation /// 0005179 // hormone activity // traceable author statement 1387661_a_at U05239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U05239.1 /DB_XREF=gi:451843 /FEA=FLmRNA /CNT=16 /TID=Rn.9762.1 /TIER=FL /STK=1 /UG=Rn.9762 /LL=29256 /UG_GENE=Oprl /DEF=Rattus norvegicus opioid-receptor-like orphan receptor mRNA, complete cds. /PROD=opioid-receptor-like orphan receptor /FL=gb:D16438.1 gb:L28144.1 gb:NM_031569.1 gb:U05239.1 gb:U01913.1 gb:U07871.1 gb:L33916.1 U05239 opiate receptor-like 1 Oprl1 29256 NM_031569 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // not recorded /// 0004985 // opioid receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015051 // X-opioid receptor activity // inferred from electronic annotation 1387662_at L38247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L38247.1 /DB_XREF=gi:598376 /FEA=FLmRNA /CNT=16 /TID=Rn.54603.1 /TIER=FL /STK=1 /UG=Rn.54603 /LL=64440 /UG_GENE=Syt4 /DEF=Rattus norvegicus (clone PCR2) synaptotagmin IV mRNA, complete cds. /PROD=synaptotagmin IV /FL=gb:L38247.1 gb:U14398.1 gb:NM_031693.1 L38247 synaptotagmin IV Syt4 64440 NM_031693 0006810 // transport // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // not recorded /// 0007269 // neurotransmitter secretion // non-traceable author statement /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0017156 // calcium ion-dependent exocytosis // non-traceable author statement 0008021 // synaptic vesicle // non-traceable author statement /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005215 // transporter activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 1387663_at NM_031032 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031032.1 /DB_XREF=gi:13624294 /GEN=Gmfb /FEA=FLmRNA /CNT=10 /TID=Rn.10454.1 /TIER=FL /STK=1 /UG=Rn.10454 /LL=81661 /DEF=Rattus norvegicus glia maturation factor beta (Gmfb), mRNA. /PROD=glia maturation factor beta /FL=gb:NM_031032.1 NM_031032 glia maturation factor, beta Gmfb 81661 NM_031032 0005622 // intracellular // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation 1387664_at NM_057213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057213.1 /DB_XREF=gi:17105369 /GEN=Atp6b2 /FEA=FLmRNA /CNT=15 /TID=Rn.13436.1 /TIER=FL /STK=1 /UG=Rn.13436 /LL=117596 /DEF=Rattus norvegicus ATPase, H+ transporting, lysosomal (vacuolar proton pump), beta 5658 kDa, isoform 2 (Atp6b2), mRNA. /PROD=ATPase, H+ transporting, lysosomal (vacuolarproton pump), beta 5658 kDa, isoform 2 /FL=gb:NM_057213.1 NM_057213 ATPase, H transporting, lysosomal V1 subunit B2 Atp6v1b2 117596 NM_057213 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007035 // vacuolar acidification // traceable author statement /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0030641 // regulation of cellular pH // traceable author statement /// 0046034 // ATP metabolic process // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016469 // proton-transporting two-sector ATPase complex // inferred from electronic annotation /// 0033178 // proton-transporting two-sector ATPase complex, catalytic domain // inferred from electronic annotation /// 0033180 // proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0046933 // hydrogen ion transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 1387665_at U96133 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U96133.1 /DB_XREF=gi:2072345 /GEN=BHMT /FEA=FLmRNA /CNT=13 /TID=Rn.11406.1 /TIER=FL /STK=1 /UG=Rn.11406 /LL=81508 /DEF=Rattus norvegicus betaine-homocysteine methyltransferase (BHMT) mRNA, complete cds. /PROD=betaine-homocysteine methyltransferase /FL=gb:NM_030850.1 gb:U96133.1 gb:AF038870.1 U96133 betaine-homocysteine methyltransferase Bhmt 81508 NM_030850 0006479 // protein methylation // inferred from direct assay /// 0009086 // methionine biosynthetic process // inferred from direct assay /// 0009086 // methionine biosynthetic process // not recorded /// 0009086 // methionine biosynthetic process // inferred from electronic annotation /// 0032259 // methylation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0008168 // methyltransferase activity // inferred from direct assay /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008898 // homocysteine S-methyltransferase activity // inferred from electronic annotation /// 0008898 // homocysteine S-methyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047150 // betaine-homocysteine S-methyltransferase activity // inferred from direct assay /// 0047150 // betaine-homocysteine S-methyltransferase activity // inferred from mutant phenotype /// 0047150 // betaine-homocysteine S-methyltransferase activity // inferred from electronic annotation 1387666_at AF203907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF203907.1 /DB_XREF=gi:11991534 /GEN=Pkrcx1 /FEA=FLmRNA /CNT=10 /TID=Rn.53985.1 /TIER=FL /STK=1 /UG=Rn.53985 /LL=64020 /DEF=Rattus norvegicus G-protein coupled receptor (Pkrcx1) mRNA, complete cds. /PROD=G-protein coupled receptor /FL=gb:AB040803.1 gb:AF203907.1 gb:NM_022254.1 AF203907 G protein-coupled receptor 85 Gpr85 64020 NM_022254 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1387667_at L12562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L12562.1 /DB_XREF=gi:310187 /FEA=FLmRNA /CNT=12 /TID=Rn.10400.1 /TIER=FL /STK=1 /UG=Rn.10400 /LL=24599 /UG_GENE=Nos2a /DEF=Rat nitric oxide synthase mRNA, complete cds. /PROD=nitric oxide synthase /FL=gb:NM_012611.1 gb:U03699.1 gb:D44591.1 gb:L12562.1 gb:U26686.1 gb:D14051.1 L12562 nitric oxide synthase 2, inducible Nos2 24599 NM_012611 0001542 // ovulation from ovarian follicle // not recorded /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001935 // endothelial cell proliferation // inferred from expression pattern /// 0001974 // blood vessel remodeling // inferred from mutant phenotype /// 0006527 // arginine catabolic process // not recorded /// 0006527 // arginine catabolic process // inferred from electronic annotation /// 0006801 // superoxide metabolic process // not recorded /// 0006801 // superoxide metabolic process // inferred from electronic annotation /// 0006801 // superoxide metabolic process // inferred from sequence or structural similarity /// 0006809 // nitric oxide biosynthetic process // inferred from direct assay /// 0006809 // nitric oxide biosynthetic process // not recorded /// 0006809 // nitric oxide biosynthetic process // inferred from electronic annotation /// 0006809 // nitric oxide biosynthetic process // traceable author statement /// 0007165 // signal transduction // inferred from direct assay /// 0007199 // G-protein signaling, coupled to cGMP nucleotide second messenger // inferred from direct assay /// 0007243 // intracellular protein kinase cascade // inferred from mutant phenotype /// 0007568 // aging // inferred from expression pattern /// 0008016 // regulation of heart contraction // inferred from mutant phenotype /// 0008217 // regulation of blood pressure // inferred from mutant phenotype /// 0019934 // cGMP-mediated signaling // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042742 // defense response to bacterium // not recorded /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0042742 // defense response to bacterium // inferred from sequence or structural similarity /// 0048384 // retinoic acid receptor signaling pathway // inferred from expression pattern /// 0050796 // regulation of insulin secretion // not recorded /// 0050829 // defense response to Gram-negative bacterium // inferred from expression pattern /// 0051712 // positive regulation of killing of cells of another organism // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0030863 // cortical cytoskeleton // not recorded /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004517 // nitric-oxide synthase activity // inferred from direct assay /// 0004517 // nitric-oxide synthase activity // not recorded /// 0004517 // nitric-oxide synthase activity // traceable author statement /// 0004517 // nitric-oxide synthase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from direct assay /// 0010181 // FMN binding // not recorded /// 0010181 // FMN binding // traceable author statement /// 0010181 // FMN binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016597 // amino acid binding // traceable author statement /// 0020037 // heme binding // not recorded /// 0020037 // heme binding // traceable author statement /// 0020037 // heme binding // inferred from electronic annotation /// 0034617 // tetrahydrobiopterin binding // not recorded /// 0034617 // tetrahydrobiopterin binding // inferred from electronic annotation /// 0034618 // arginine binding // not recorded /// 0034618 // arginine binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // not recorded /// 0050660 // FAD or FADH2 binding // traceable author statement /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // traceable author statement /// 0050661 // NADP or NADPH binding // inferred from electronic annotation 1387668_at U05963 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U05963.1 /DB_XREF=gi:458332 /FEA=FLmRNA /CNT=12 /TID=Rn.37539.1 /TIER=FL /STK=1 /UG=Rn.37539 /LL=25622 /UG_GENE=Ptpn11 /DEF=Rattus norvegicus Sprague Dawley protein tyrosine phosphatase mRNA, complete cds. /PROD=protein tyrosine phosphatase /FL=gb:NM_013088.1 gb:U05963.1 gb:U09307.1 U05963 protein tyrosine phosphatase, non-receptor type 11 Ptpn11 25622 NM_001177593 /// NM_013088 0000077 // DNA damage checkpoint // inferred from electronic annotation /// 0000077 // DNA damage checkpoint // not recorded /// 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // not recorded /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0009755 // hormone-mediated signaling pathway // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0009967 // positive regulation of signal transduction // inferred from electronic annotation /// 0009967 // positive regulation of signal transduction // not recorded /// 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0035265 // organ growth // inferred from electronic annotation /// 0035265 // organ growth // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0042445 // hormone metabolic process // inferred from electronic annotation /// 0042445 // hormone metabolic process // not recorded /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042593 // glucose homeostasis // not recorded /// 0046676 // negative regulation of insulin secretion // inferred from electronic annotation /// 0046676 // negative regulation of insulin secretion // not recorded /// 0046825 // regulation of protein export from nucleus // inferred from electronic annotation /// 0046825 // regulation of protein export from nucleus // not recorded /// 0046887 // positive regulation of hormone secretion // inferred from electronic annotation /// 0046887 // positive regulation of hormone secretion // not recorded /// 0046888 // negative regulation of hormone secretion // not recorded /// 0046888 // negative regulation of hormone secretion // inferred from electronic annotation /// 0048011 // nerve growth factor receptor signaling pathway // inferred from electronic annotation /// 0048011 // nerve growth factor receptor signaling pathway // not recorded /// 0048609 // multicellular organismal reproductive process // inferred from electronic annotation /// 0048609 // multicellular organismal reproductive process // not recorded /// 0051463 // negative regulation of cortisol secretion // inferred from electronic annotation /// 0051463 // negative regulation of cortisol secretion // not recorded /// 0060125 // negative regulation of growth hormone secretion // inferred from electronic annotation /// 0060125 // negative regulation of growth hormone secretion // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0043234 // protein complex // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // not recorded /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004726 // non-membrane spanning protein tyrosine phosphatase activity // not recorded /// 0005158 // insulin receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0043274 // phospholipase binding // inferred from direct assay /// 0043560 // insulin receptor substrate binding // inferred from physical interaction /// 0051428 // peptide hormone receptor binding // inferred from electronic annotation /// 0051428 // peptide hormone receptor binding // not recorded 1387669_a_at NM_012844 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012844.1 /DB_XREF=gi:6978812 /GEN=Ephx1 /FEA=FLmRNA /CNT=10 /TID=Rn.3603.1 /TIER=FL /STK=1 /UG=Rn.3603 /LL=25315 /DEF=Rattus norvegicus Epoxide hydrolase 1 (microsomal xenobiotic hydrolase) (Ephx1), mRNA. /PROD=epoxide hydrolase 1 (microsomal xenobiotichydrolase /FL=gb:NM_012844.1 NM_012844 epoxide hydrolase 1, microsomal Ephx1 25315 NM_001034090 /// NM_012844 0006725 // cellular aromatic compound metabolic process // not recorded /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0009636 // response to toxin // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // not recorded /// 0019439 // aromatic compound catabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // traceable author statement /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004301 // epoxide hydrolase activity // traceable author statement /// 0004301 // epoxide hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0033961 // cis-stilbene-oxide hydrolase activity // inferred from electronic annotation 1387670_at U08027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U08027.1 /DB_XREF=gi:493021 /GEN=mGPD /FEA=FLmRNA /CNT=18 /TID=Rn.10167.1 /TIER=FL /STK=1 /UG=Rn.10167 /LL=25062 /DEF=Rattus norvegicus Sprague-Dawley glycerolphosphate dehydrogenase (mGPD) mRNA, complete cds. /PROD=glycerolphosphate dehydrogenase /FL=gb:NM_012736.1 gb:U08027.1 U08027 glycerol-3-phosphate dehydrogenase 2, mitochondrial Gpd2 25062 NM_012736 0006072 // glycerol-3-phosphate metabolic process // inferred from direct assay /// 0006072 // glycerol-3-phosphate metabolic process // inferred from electronic annotation /// 0006072 // glycerol-3-phosphate metabolic process // not recorded /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006094 // gluconeogenesis // not recorded /// 0006734 // NADH metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0009331 // glycerol-3-phosphate dehydrogenase complex // inferred from electronic annotation 0004367 // glycerol-3-phosphate dehydrogenase [NAD+] activity // inferred from direct assay /// 0004368 // glycerol-3-phosphate dehydrogenase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1387671_at NM_031115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031115.1 /DB_XREF=gi:13592080 /GEN=Sctr /FEA=FLmRNA /CNT=9 /TID=Rn.32256.1 /TIER=FL /STK=1 /UG=Rn.32256 /LL=81779 /DEF=Rattus norvegicus secretin receptor (Sctr), mRNA. /PROD=secretin receptor /FL=gb:NM_031115.1 NM_031115 secretin receptor Sctr 81779 NM_031115 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0015055 // secretin receptor activity // inferred from direct assay /// 0042277 // peptide binding // inferred from direct assay 1387672_at NM_017084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017084.1 /DB_XREF=gi:8567353 /GEN=Gnmt /FEA=FLmRNA /CNT=7 /TID=Rn.11142.1 /TIER=FL /STK=1 /UG=Rn.11142 /LL=25134 /DEF=Rattus norvegicus Glycine methyltransferase (Gnmt), mRNA. /PROD=glycine methyltransferase /FL=gb:NM_017084.1 NM_017084 glycine N-methyltransferase Gnmt 25134 NM_017084 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // not recorded /// 0006111 // regulation of gluconeogenesis // inferred from electronic annotation /// 0006111 // regulation of gluconeogenesis // not recorded /// 0006555 // methionine metabolic process // inferred from electronic annotation /// 0006555 // methionine metabolic process // not recorded /// 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0006730 // one-carbon metabolic process // not recorded /// 0032259 // methylation // not recorded /// 0046498 // S-adenosylhomocysteine metabolic process // inferred from direct assay /// 0046500 // S-adenosylmethionine metabolic process // inferred from direct assay /// 0046500 // S-adenosylmethionine metabolic process // inferred from mutant phenotype /// 0046500 // S-adenosylmethionine metabolic process // not recorded /// 0046500 // S-adenosylmethionine metabolic process // inferred from electronic annotation /// 0046655 // folic acid metabolic process // traceable author statement /// 0051289 // protein homotetramerization // inferred from physical interaction /// 0051289 // protein homotetramerization // not recorded /// 0051289 // protein homotetramerization // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0005542 // folic acid binding // traceable author statement /// 0005542 // folic acid binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from direct assay /// 0016594 // glycine binding // inferred from direct assay /// 0016594 // glycine binding // not recorded /// 0016594 // glycine binding // traceable author statement /// 0016594 // glycine binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017174 // glycine N-methyltransferase activity // inferred from direct assay /// 0017174 // glycine N-methyltransferase activity // not recorded /// 0017174 // glycine N-methyltransferase activity // inferred from electronic annotation 1387673_a_at BI285568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285568 /DB_XREF=gi:14939354 /DB_XREF=UI-R-CW0s-ccb-f-08-0-UI.s1 /CLONE=UI-R-CW0s-ccb-f-08-0-UI /FEA=EST /CNT=27 /TID=Rn.10407.2 /TIER=Stack /STK=16 /UG=Rn.10407 /LL=79125 /UG_GENE=Anxa6 /UG_TITLE=annexin VI BI285568 annexin A6 Anxa6 79125 NM_024156 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006937 // regulation of muscle contraction // inferred from electronic annotation /// 0006937 // regulation of muscle contraction // not recorded /// 0046903 // secretion // traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005544 // calcium-dependent phospholipid binding // inferred from direct assay /// 0005544 // calcium-dependent phospholipid binding // not recorded /// 0005544 // calcium-dependent phospholipid binding // traceable author statement /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation 1387674_at NM_012784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012784.1 /DB_XREF=gi:6978672 /GEN=Cnr1 /FEA=FLmRNA /CNT=11 /TID=Rn.10579.1 /TIER=FL /STK=1 /UG=Rn.10579 /LL=25248 /DEF=Rattus norvegicus Cannabinoid receptor 1 (Cnr1), mRNA. /PROD=cannabinoid receptor 1 /FL=gb:U40395.1 gb:NM_012784.1 NM_012784 cannabinoid receptor 1 (brain) Cnr1 25248 NM_012784 0002866 // positive regulation of acute inflammatory response to antigenic stimulus // inferred from mutant phenotype /// 0006950 // response to stress // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0007568 // aging // inferred from mutant phenotype /// 0007584 // response to nutrient // inferred from expression pattern /// 0007610 // behavior // inferred from direct assay /// 0007611 // learning or memory // inferred from mutant phenotype /// 0007613 // memory // inferred from direct assay /// 0010976 // positive regulation of neuron projection development // inferred from direct assay /// 0019216 // regulation of lipid metabolic process // inferred from mutant phenotype /// 0019233 // sensory perception of pain // inferred from mutant phenotype /// 0031622 // positive regulation of fever // inferred from mutant phenotype /// 0031999 // negative regulation of fatty acid beta-oxidation // inferred from mutant phenotype /// 0032228 // regulation of synaptic transmission, GABAergic // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from mutant phenotype /// 0033004 // negative regulation of mast cell activation // inferred from direct assay /// 0033602 // negative regulation of dopamine secretion // inferred from mutant phenotype /// 0035094 // response to nicotine // inferred from mutant phenotype /// 0042220 // response to cocaine // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043271 // negative regulation of ion transport // inferred from direct assay /// 0043278 // response to morphine // inferred from mutant phenotype /// 0045471 // response to ethanol // inferred from mutant phenotype /// 0045759 // negative regulation of action potential // inferred from mutant phenotype /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0045777 // positive regulation of blood pressure // inferred from mutant phenotype /// 0050796 // regulation of insulin secretion // inferred from mutant phenotype /// 0051001 // negative regulation of nitric-oxide synthase activity // inferred from mutant phenotype /// 0051966 // regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype /// 0060135 // maternal process involved in female pregnancy // inferred from expression pattern /// 0060259 // regulation of feeding behavior // inferred from mutant phenotype /// 0060405 // regulation of penile erection // inferred from mutant phenotype 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004949 // cannabinoid receptor activity // inferred from mutant phenotype /// 0004949 // cannabinoid receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008144 // drug binding // inferred from mutant phenotype 1387675_at X63434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X63434.1 /DB_XREF=gi:57465 /FEA=FLmRNA /CNT=9 /TID=Rn.6064.1 /TIER=ConsEnd /STK=4 /UG=Rn.6064 /LL=25619 /UG_GENE=Plau /DEF=R.norvegicus mRNA for urokinase-type plasminogen activator. /PROD=urikinase-type plasminogen activator /FL=gb:NM_013085.1 X63434 plasminogen activator, urokinase Plau 25619 NM_013085 0001525 // angiogenesis // inferred from mutant phenotype /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0006508 // proteolysis // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006935 // chemotaxis // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007566 // embryo implantation // inferred from expression pattern /// 0010469 // regulation of receptor activity // inferred from electronic annotation /// 0010469 // regulation of receptor activity // not recorded /// 0014909 // smooth muscle cell migration // not recorded /// 0014909 // smooth muscle cell migration // inferred from electronic annotation /// 0014910 // regulation of smooth muscle cell migration // inferred from electronic annotation /// 0014910 // regulation of smooth muscle cell migration // not recorded /// 0033628 // regulation of cell adhesion mediated by integrin // inferred from electronic annotation /// 0033628 // regulation of cell adhesion mediated by integrin // not recorded /// 0042060 // wound healing // inferred from mutant phenotype /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0043403 // skeletal muscle tissue regeneration // inferred from mutant phenotype /// 0048514 // blood vessel morphogenesis // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387676_at NM_053947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053947.1 /DB_XREF=gi:16758823 /GEN=Mark1 /FEA=FLmRNA /CNT=7 /TID=Rn.21430.1 /TIER=FL /STK=1 /UG=Rn.21430 /LL=117016 /DEF=Rattus norvegicus MAPmicrotubule affinity-regulating kinase 1 (Mark1), mRNA. /PROD=MAPmicrotubule affinity-regulating kinase 1 /FL=gb:NM_053947.1 NM_053947 MAP/microtubule affinity-regulating kinase 1 Mark1 117016 NM_053947 0000226 // microtubule cytoskeleton organization // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007010 // cytoskeleton organization // inferred from direct assay /// 0007243 // intracellular protein kinase cascade // inferred from direct assay /// 0007243 // intracellular protein kinase cascade // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // non-traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387677_at M84645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M84645.1 /DB_XREF=gi:206659 /GEN=RHS2 /FEA=FLmRNA /CNT=7 /TID=Rn.33030.1 /TIER=FL /STK=1 /UG=Rn.33030 /LL=29589 /DEF=Sprague-Dawley RHS2 class III POU protein (RHS2) complete cds. /PROD=RHS2 class III POU protein /FL=gb:NM_017252.1 gb:M84645.1 M84645 POU class 3 homeobox 4 Pou3f4 29589 NM_017252 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0021879 // forebrain neuron differentiation // inferred from electronic annotation /// 0021879 // forebrain neuron differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048839 // inner ear development // inferred from electronic annotation /// 0048839 // inner ear development // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0044424 // intracellular part // inferred from electronic annotation /// 0044424 // intracellular part // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003680 // AT DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1387678_at NM_080766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080766.1 /DB_XREF=gi:18158430 /GEN=Nras /FEA=FLmRNA /CNT=13 /TID=Rn.11271.1 /TIER=FL /STK=1 /UG=Rn.11271 /DEF=Rattus norvegicus Neuroblastoma RAS viral (v-ras) oncogene homolog (Nras), mRNA. /PROD=neuroblastoma RAS viral (v-ras) oncogenehomolog /FL=gb:NM_080766.1 NM_080766 neuroblastoma ras oncogene Nras 24605 NM_080766 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0007265 // Ras protein signal transduction // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1387679_at NM_031650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031650.1 /DB_XREF=gi:13928899 /GEN=Slc21a10 /FEA=FLmRNA /CNT=6 /TID=Rn.48740.1 /TIER=FL /STK=1 /UG=Rn.48740 /LL=58978 /DEF=Rattus norvegicus solute carrier family (organic anion transporter) member 10 (Slc21a10), mRNA. /PROD=solute carrier family (organic aniontransporter) member 10 /FL=gb:AF208545.2 gb:NM_031650.1 NM_031650 solute carrier organic anion transporter family, member 1b3 Slco1b3 58978 NM_031650 0001889 // liver development // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006857 // oligopeptide transport // inferred from direct assay /// 0015721 // bile acid and bile salt transport // inferred from direct assay /// 0015893 // drug transport // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033993 // response to lipid // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0046677 // response to antibiotic // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016323 // basolateral plasma membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0008514 // organic anion transmembrane transporter activity // traceable author statement /// 0015125 // bile acid transmembrane transporter activity // inferred from direct assay /// 0015125 // bile acid transmembrane transporter activity // not recorded /// 0015198 // oligopeptide transporter activity // inferred from direct assay /// 0015238 // drug transmembrane transporter activity // inferred from mutant phenotype 1387680_at AF327906 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF327906.1 /DB_XREF=gi:13195525 /GEN=Pde1B /FEA=FLmRNA /CNT=5 /TID=Rn.74045.1 /TIER=FL /STK=1 /UG=Rn.74045 /LL=29691 /DEF=Rattus norvegicus clone GB1B21a phosphodiesterase 1B (Pde1B) mRNA, complete cds. /PROD=phosphodiesterase 1B /FL=gb:NM_022710.1 gb:AF327906.1 gb:M94537.1 AF327906 phosphodiesterase 1B, calmodulin-dependent Pde1b 29691 NM_022710 0006198 // cAMP catabolic process // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008542 // visual learning // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0046069 // cGMP catabolic process // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0043025 // neuronal cell body // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004112 // cyclic-nucleotide phosphodiesterase activity // inferred from direct assay /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from direct assay /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048101 // calcium- and calmodulin-regulated 3',5'-cyclic-GMP phosphodiesterase activity // inferred from direct assay 1387681_at U92069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U92069.1 /DB_XREF=gi:2444166 /FEA=FLmRNA /CNT=5 /TID=Rn.9902.1 /TIER=FL /STK=1 /UG=Rn.9902 /LL=25708 /UG_GENE=Ucp3 /DEF=Rattus norvegicus UCP3 mRNA, complete cds. /PROD=UCP3 /FL=gb:U92069.1 gb:AB006614.1 gb:AF035943.1 gb:AF030163.1 gb:NM_013167.1 U92069 uncoupling protein 3 (mitochondrial, proton carrier) Ucp3 25708 NM_013167 0000303 // response to superoxide // inferred from direct assay /// 0000303 // response to superoxide // not recorded /// 0000303 // response to superoxide // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from direct assay /// 0001666 // response to hypoxia // inferred from expression pattern /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006839 // mitochondrial transport // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0009409 // response to cold // inferred from expression pattern /// 0014823 // response to activity // inferred from expression pattern /// 0015992 // proton transport // not recorded /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055085 // transmembrane transport // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0015078 // hydrogen ion transmembrane transporter activity // traceable author statement /// 0017077 // oxidative phosphorylation uncoupler activity // inferred from electronic annotation /// 0017077 // oxidative phosphorylation uncoupler activity // not recorded 1387682_at M90308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M90308.1 /DB_XREF=gi:207471 /GEN=TRH-R /FEA=FLmRNA /CNT=6 /TID=Rn.9962.1 /TIER=FL /STK=1 /UG=Rn.9962 /LL=25570 /DEF=Rat thyrotropin-releasing hormone receptor (TRH-R) mRNA, complete cds. /PROD=thyrotropin-releasing hormone receptor /FL=gb:NM_013047.1 gb:D17469.1 gb:M90308.1 M90308 thyrotropin releasing hormone receptor Trhr 25570 NM_013047 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0090073 // positive regulation of protein homodimerization activity // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004997 // thyrotropin-releasing hormone receptor activity // inferred from direct assay /// 0004997 // thyrotropin-releasing hormone receptor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay 1387683_at NM_030999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030999.1 /DB_XREF=gi:13591891 /GEN=Crhr1 /FEA=FLmRNA /CNT=5 /TID=Rn.10499.1 /TIER=ConsEnd /STK=0 /UG=Rn.10499 /LL=58959 /DEF=Rattus norvegicus corticotropin releasing hormone receptor (Crhr1), mRNA. /PROD=corticotropin releasing hormone receptor /FL=gb:NM_030999.1 gb:L25438.1 NM_030999 corticotropin releasing hormone receptor 1 Crhr1 58959 NM_030999 0001666 // response to hypoxia // inferred from mutant phenotype /// 0006950 // response to stress // inferred from mutant phenotype /// 0006950 // response to stress // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from direct assay /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from direct assay /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0007218 // neuropeptide signaling pathway // inferred from direct assay /// 0007610 // behavior // not recorded /// 0007610 // behavior // inferred from electronic annotation /// 0007613 // memory // inferred from mutant phenotype /// 0008542 // visual learning // inferred from mutant phenotype /// 0032099 // negative regulation of appetite // inferred from mutant phenotype /// 0042755 // eating behavior // inferred from mutant phenotype /// 0043526 // neuroprotection // inferred from mutant phenotype /// 0048167 // regulation of synaptic plasticity // inferred from mutant phenotype /// 0048266 // behavioral response to pain // inferred from mutant phenotype 0005771 // multivesicular body // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0031982 // vesicle // inferred from direct assay /// 0033267 // axon part // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0045177 // apical part of cell // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from direct assay /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0015056 // corticotrophin-releasing factor receptor activity // inferred from electronic annotation /// 0015056 // corticotrophin-releasing factor receptor activity // not recorded /// 0042277 // peptide binding // inferred from physical interaction /// 0043404 // corticotropin-releasing hormone receptor activity // inferred from direct assay /// 0051424 // corticotropin-releasing hormone binding // inferred from direct assay 1387684_at U75918 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U75918.1 /DB_XREF=gi:3779002 /FEA=FLmRNA /CNT=5 /TID=Rn.10199.1 /TIER=FL /STK=1 /UG=Rn.10199 /LL=25682 /UG_GENE=Ppard /DEF=Rattus norvegicus peroxisome proliferator activated receptor delta mRNA, complete cds. /PROD=peroxisome proliferator activated receptordelta /FL=gb:U40064.1 gb:NM_013141.1 gb:U75918.1 U75918 peroxisome proliferator-activated receptor delta Ppard 25682 NM_013141 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001890 // placenta development // not recorded /// 0001890 // placenta development // inferred from electronic annotation /// 0006029 // proteoglycan metabolic process // inferred from direct assay /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from direct assay /// 0006629 // lipid metabolic process // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // non-traceable author statement /// 0006635 // fatty acid beta-oxidation // not recorded /// 0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from sequence or structural similarity /// 0006776 // vitamin A metabolic process // inferred from mutant phenotype /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007507 // heart development // inferred from expression pattern /// 0007566 // embryo implantation // inferred from expression pattern /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008366 // axon ensheathment // not recorded /// 0008366 // axon ensheathment // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from direct assay /// 0009266 // response to temperature stimulus // non-traceable author statement /// 0009299 // mRNA transcription // inferred from direct assay /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014823 // response to activity // inferred from expression pattern /// 0014912 // negative regulation of smooth muscle cell migration // inferred from direct assay /// 0015908 // fatty acid transport // not recorded /// 0015908 // fatty acid transport // inferred from electronic annotation /// 0015908 // fatty acid transport // inferred from sequence or structural similarity /// 0019395 // fatty acid oxidation // inferred from direct assay /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0031589 // cell-substrate adhesion // not recorded /// 0031589 // cell-substrate adhesion // inferred from electronic annotation /// 0032024 // positive regulation of insulin secretion // inferred from direct assay /// 0032966 // negative regulation of collagen biosynthetic process // inferred from mutant phenotype /// 0033189 // response to vitamin A // inferred from expression pattern /// 0042060 // wound healing // not recorded /// 0042060 // wound healing // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042640 // anagen // not recorded /// 0042640 // anagen // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB cascade // non-traceable author statement /// 0043616 // keratinocyte proliferation // not recorded /// 0043616 // keratinocyte proliferation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045598 // regulation of fat cell differentiation // not recorded /// 0045598 // regulation of fat cell differentiation // inferred from electronic annotation /// 0045684 // positive regulation of epidermis development // inferred from direct assay /// 0045909 // positive regulation of vasodilation // inferred from direct assay /// 0046697 // decidualization // inferred from expression pattern /// 0048265 // response to pain // non-traceable author statement /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from direct assay /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // inferred from direct assay /// 0051546 // keratinocyte migration // not recorded /// 0051546 // keratinocyte migration // inferred from electronic annotation /// 0060612 // adipose tissue development // not recorded /// 0060612 // adipose tissue development // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // not recorded /// 0004879 // ligand-dependent nuclear receptor activity // traceable author statement /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005504 // fatty acid binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008144 // drug binding // not recorded /// 0008144 // drug binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008289 // lipid binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051059 // NF-kappaB binding // inferred from physical interaction /// 0070539 // linoleic acid binding // not recorded /// 0070539 // linoleic acid binding // inferred from electronic annotation 1387685_at NM_024366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024366.1 /DB_XREF=gi:13242260 /GEN=Freq /FEA=FLmRNA /CNT=5 /TID=Rn.35282.1 /TIER=FL /STK=1 /UG=Rn.35282 /LL=65153 /DEF=Rattus norvegicus frequenin homolog (Drosophila) (Freq), mRNA. /PROD=neuronal calcium sensor-1 /FL=gb:L27421.1 gb:NM_024366.1 NM_024366 frequenin homolog (Drosophila) Freq 65153 NM_024366 0010975 // regulation of neuron projection development // inferred from mutant phenotype /// 0045921 // positive regulation of exocytosis // inferred from direct assay /// 0048015 // phosphoinositide-mediated signaling // inferred from direct assay /// 0051927 // negative regulation of calcium ion transport via voltage-gated calcium channel activity // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0031045 // dense core granule // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005509 // calcium ion binding // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008427 // calcium-dependent protein kinase inhibitor activity // traceable author statement 1387686_at NM_020102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020102.2 /DB_XREF=gi:19923706 /GEN=Mos /FEA=FLmRNA /CNT=4 /TID=Rn.10341.1 /TIER=FL /STK=1 /UG=Rn.10341 /LL=24559 /DEF=Rattus norvegicus Moloney murine sarcoma viral (v-mos) oncogene homolog (Mos), mRNA. /PROD=moloney murine sarcoma viral (v-mos) oncogenehomolog /FL=gb:NM_020102.2 NM_020102 Moloney sarcoma oncogene Mos 24559 NM_020102 0006468 // protein phosphorylation // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // traceable author statement /// 0007283 // spermatogenesis // non-traceable author statement 0005829 // cytosol // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387687_at NM_133542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133542.1 /DB_XREF=gi:19424205 /GEN=Igsf6 /FEA=FLmRNA /CNT=4 /TID=Rn.16316.1 /TIER=FL /STK=1 /UG=Rn.16316 /LL=171064 /DEF=Rattus norvegicus immunoglobulin superfamily, member 6 (Igsf6), mRNA. /PROD=immunoglobulin superfamily, member 6 /FL=gb:NM_133542.1 NM_133542 immunoglobulin superfamily, member 6 Igsf6 171064 NM_133542 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1387688_at L03202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L03202.1 /DB_XREF=gi:294507 /FEA=FLmRNA /CNT=4 /TID=Rn.10552.1 /TIER=FL /STK=1 /UG=Rn.10552 /LL=64354 /UG_GENE=Htr6 /DEF=Rattus norvegicus serotoinin receptor mRNA, complete cds. /PROD=serotonin receptor /FL=gb:NM_024365.1 gb:L03202.1 gb:L41146.1 gb:L19656.1 L03202 5-hydroxytryptamine (serotonin) receptor 6 Htr6 64354 NM_024365 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007187 // G-protein signaling, coupled to cyclic nucleotide second messenger // inferred from mutant phenotype /// 0007420 // brain development // inferred from expression pattern /// 0007612 // learning // inferred from direct assay /// 0014050 // negative regulation of glutamate secretion // inferred from mutant phenotype /// 0014053 // negative regulation of gamma-aminobutyric acid secretion // inferred from mutant phenotype /// 0014054 // positive regulation of gamma-aminobutyric acid secretion // inferred from mutant phenotype /// 0014058 // negative regulation of acetylcholine secretion // inferred from mutant phenotype /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0033603 // positive regulation of dopamine secretion // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0060291 // long-term synaptic potentiation // inferred from mutant phenotype 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // inferred from direct assay /// 0005515 // protein binding // not recorded 1387689_at NM_017304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017304.1 /DB_XREF=gi:8393645 /GEN=Kcnab2 /FEA=FLmRNA /CNT=4 /TID=Rn.10757.1 /TIER=FL /STK=1 /UG=Rn.10757 /LL=29738 /DEF=Rattus norvegicus potassium voltage gated channel, shaker related subfamily, beta member 2 (Kcnab2), mRNA. /PROD=potassium voltage gated channel, shaker relatedsubfamily, beta member 2 /FL=gb:NM_017304.1 NM_017304 potassium voltage-gated channel, shaker-related subfamily, beta member 2 Kcnab2 29738 NM_017304 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from physical interaction /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0044224 // juxtaparanode region of axon // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1387690_at U84410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U84410.1 /DB_XREF=gi:1814026 /FEA=FLmRNA /CNT=4 /TID=Rn.10562.1 /TIER=FL /STK=1 /UG=Rn.10562 /LL=25402 /UG_GENE=Casp3 /DEF=Rattus norvegicus interleukin-1beta-converting enzyme-related protease CPP32 mRNA, complete cds. /PROD=CPP32 /FL=gb:U84410.1 gb:NM_012922.1 gb:U49930.1 U84410 caspase 3 Casp3 25402 NM_012922 0001666 // response to hypoxia // inferred from expression pattern /// 0001782 // B cell homeostasis // not recorded /// 0001836 // release of cytochrome c from mitochondria // not recorded /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // not recorded /// 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from mutant phenotype /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006917 // induction of apoptosis // traceable author statement /// 0006974 // response to DNA damage stimulus // not recorded /// 0007507 // heart development // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0007611 // learning or memory // inferred from mutant phenotype /// 0008152 // metabolic process // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0008625 // induction of apoptosis via death domain receptors // not recorded /// 0008631 // induction of apoptosis by oxidative stress // not recorded /// 0009411 // response to UV // not recorded /// 0009611 // response to wounding // not recorded /// 0009749 // response to glucose stimulus // inferred from direct assay /// 0010033 // response to organic substance // inferred from expression pattern /// 0010038 // response to metal ion // inferred from expression pattern /// 0010165 // response to X-ray // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0021766 // hippocampus development // inferred from expression pattern /// 0023034 // intracellular signaling pathway // inferred from mutant phenotype /// 0030182 // neuron differentiation // inferred from expression pattern /// 0030216 // keratinocyte differentiation // not recorded /// 0030264 // nuclear fragmentation involved in apoptotic nuclear change // not recorded /// 0030889 // negative regulation of B cell proliferation // not recorded /// 0032025 // response to cobalt ion // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0034349 // glial cell apoptosis // inferred from expression pattern /// 0035094 // response to nicotine // inferred from expression pattern /// 0042060 // wound healing // inferred from expression pattern /// 0042326 // negative regulation of phosphorylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from direct assay /// 0043029 // T cell homeostasis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // not recorded /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0045165 // cell fate commitment // not recorded /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // not recorded /// 0045786 // negative regulation of cell cycle // not recorded /// 0046007 // negative regulation of activated T cell proliferation // not recorded /// 0046677 // response to antibiotic // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051402 // neuron apoptosis // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // inferred from mutant phenotype /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004197 // cysteine-type endopeptidase activity // not recorded /// 0004861 // cyclin-dependent protein kinase inhibitor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008234 // cysteine-type peptidase activity // inferred from direct assay /// 0008234 // cysteine-type peptidase activity // not recorded /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016005 // phospholipase A2 activator activity // inferred from mutant phenotype /// 0016787 // hydrolase activity // inferred from electronic annotation 1387691_at NM_012675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012675.1 /DB_XREF=gi:6981661 /GEN=Tnf /FEA=FLmRNA /CNT=4 /TID=Rn.2275.1 /TIER=FL /STK=1 /UG=Rn.2275 /LL=24835 /DEF=Rattus norvegicus Tumor necrosis factor, alpha (cachetin) (Tnf), mRNA. /PROD=tumor necrosis factor, alpha (cachetin) /FL=gb:NM_012675.1 NM_012675 tumor necrosis factor (TNF superfamily, member 2) Tnf 24835 NM_012675 0000060 // protein import into nucleus, translocation // inferred from electronic annotation /// 0000060 // protein import into nucleus, translocation // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001775 // cell activation // inferred from direct assay /// 0001819 // positive regulation of cytokine production // not recorded /// 0001819 // positive regulation of cytokine production // inferred from electronic annotation /// 0001932 // regulation of protein phosphorylation // not recorded /// 0001932 // regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0002037 // negative regulation of L-glutamate transport // inferred from direct assay /// 0002439 // chronic inflammatory response to antigenic stimulus // not recorded /// 0002439 // chronic inflammatory response to antigenic stimulus // inferred from electronic annotation /// 0002740 // negative regulation of cytokine secretion involved in immune response // inferred from electronic annotation /// 0002740 // negative regulation of cytokine secretion involved in immune response // not recorded /// 0002876 // positive regulation of chronic inflammatory response to antigenic stimulus // inferred from electronic annotation /// 0002876 // positive regulation of chronic inflammatory response to antigenic stimulus // not recorded /// 0002925 // positive regulation of humoral immune response mediated by circulating immunoglobulin // inferred from electronic annotation /// 0002925 // positive regulation of humoral immune response mediated by circulating immunoglobulin // not recorded /// 0003009 // skeletal muscle contraction // inferred from expression pattern /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006915 // apoptosis // inferred from direct assay /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from direct assay /// 0006917 // induction of apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0006927 // transformed cell apoptosis // inferred from electronic annotation /// 0006927 // transformed cell apoptosis // not recorded /// 0006952 // defense response // not recorded /// 0006952 // defense response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0006954 // inflammatory response // traceable author statement /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0006959 // humoral immune response // inferred from electronic annotation /// 0006959 // humoral immune response // not recorded /// 0007165 // signal transduction // inferred from direct assay /// 0007254 // JNK cascade // not recorded /// 0007254 // JNK cascade // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007275 // multicellular organismal development // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0008624 // induction of apoptosis by extracellular signals // inferred from electronic annotation /// 0008625 // induction of apoptosis via death domain receptors // inferred from electronic annotation /// 0008625 // induction of apoptosis via death domain receptors // not recorded /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009615 // response to virus // inferred from electronic annotation /// 0009615 // response to virus // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0014823 // response to activity // inferred from expression pattern /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from direct assay /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030316 // osteoclast differentiation // not recorded /// 0030316 // osteoclast differentiation // inferred from electronic annotation /// 0030730 // sequestering of triglyceride // inferred from electronic annotation /// 0030730 // sequestering of triglyceride // not recorded /// 0031622 // positive regulation of fever // not recorded /// 0032582 // negative regulation of gene-specific transcription // inferred from electronic annotation /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0032715 // negative regulation of interleukin-6 production // inferred from electronic annotation /// 0032715 // negative regulation of interleukin-6 production // not recorded /// 0032722 // positive regulation of chemokine production // inferred from electronic annotation /// 0032722 // positive regulation of chemokine production // not recorded /// 0032729 // positive regulation of interferon-gamma production // inferred from electronic annotation /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0032741 // positive regulation of interleukin-18 production // inferred from mutant phenotype /// 0032755 // positive regulation of interleukin-6 production // inferred from electronic annotation /// 0032755 // positive regulation of interleukin-6 production // not recorded /// 0032800 // receptor biosynthetic process // inferred from electronic annotation /// 0032800 // receptor biosynthetic process // not recorded /// 0033209 // tumor necrosis factor-mediated signaling pathway // inferred from electronic annotation /// 0033209 // tumor necrosis factor-mediated signaling pathway // not recorded /// 0034116 // positive regulation of heterotypic cell-cell adhesion // inferred from electronic annotation /// 0034116 // positive regulation of heterotypic cell-cell adhesion // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042346 // positive regulation of NF-kappaB import into nucleus // inferred from electronic annotation /// 0042346 // positive regulation of NF-kappaB import into nucleus // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042742 // defense response to bacterium // not recorded /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043122 // regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043122 // regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from genetic interaction /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0044130 // negative regulation of growth of symbiont in host // inferred from electronic annotation /// 0044130 // negative regulation of growth of symbiont in host // not recorded /// 0045071 // negative regulation of viral genome replication // inferred from electronic annotation /// 0045071 // negative regulation of viral genome replication // not recorded /// 0045080 // positive regulation of chemokine biosynthetic process // inferred from electronic annotation /// 0045080 // positive regulation of chemokine biosynthetic process // not recorded /// 0045123 // cellular extravasation // not recorded /// 0045123 // cellular extravasation // inferred from electronic annotation /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045429 // positive regulation of nitric oxide biosynthetic process // not recorded /// 0045670 // regulation of osteoclast differentiation // inferred from electronic annotation /// 0045670 // regulation of osteoclast differentiation // not recorded /// 0045840 // positive regulation of mitosis // inferred from mutant phenotype /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045994 // positive regulation of translational initiation by iron // inferred from electronic annotation /// 0045994 // positive regulation of translational initiation by iron // not recorded /// 0046325 // negative regulation of glucose import // inferred from direct assay /// 0046325 // negative regulation of glucose import // not recorded /// 0046325 // negative regulation of glucose import // inferred from electronic annotation /// 0046330 // positive regulation of JNK cascade // inferred from electronic annotation /// 0046330 // positive regulation of JNK cascade // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // not recorded /// 0050715 // positive regulation of cytokine secretion // inferred from electronic annotation /// 0050715 // positive regulation of cytokine secretion // not recorded /// 0050729 // positive regulation of inflammatory response // inferred from mutant phenotype /// 0050796 // regulation of insulin secretion // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // not recorded /// 0050806 // positive regulation of synaptic transmission // inferred from mutant phenotype /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // not recorded /// 0050900 // leukocyte migration // not recorded /// 0050900 // leukocyte migration // inferred from electronic annotation /// 0050901 // leukocyte tethering or rolling // inferred from electronic annotation /// 0050901 // leukocyte tethering or rolling // not recorded /// 0050995 // negative regulation of lipid catabolic process // inferred from electronic annotation /// 0050995 // negative regulation of lipid catabolic process // not recorded /// 0051023 // regulation of immunoglobulin secretion // inferred from electronic annotation /// 0051023 // regulation of immunoglobulin secretion // not recorded /// 0051044 // positive regulation of membrane protein ectodomain proteolysis // inferred from electronic annotation /// 0051044 // positive regulation of membrane protein ectodomain proteolysis // not recorded /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0051091 // positive regulation of transcription factor activity // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051222 // positive regulation of protein transport // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // not recorded /// 0051798 // positive regulation of hair follicle development // inferred from electronic annotation /// 0051798 // positive regulation of hair follicle development // not recorded /// 0060555 // induction of necroptosis by extracellular signals // inferred from electronic annotation /// 0060555 // induction of necroptosis by extracellular signals // not recorded /// 0060557 // positive regulation of vitamin D biosynthetic process // inferred from electronic annotation /// 0060557 // positive regulation of vitamin D biosynthetic process // not recorded /// 0060559 // positive regulation of calcidiol 1-monooxygenase activity // inferred from electronic annotation /// 0060559 // positive regulation of calcidiol 1-monooxygenase activity // not recorded /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // not recorded /// 0060693 // regulation of branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060693 // regulation of branching involved in salivary gland morphogenesis // not recorded /// 0061048 // negative regulation of branching involved in lung morphogenesis // inferred from electronic annotation /// 0061048 // negative regulation of branching involved in lung morphogenesis // not recorded /// 0070265 // necrotic cell death // inferred from electronic annotation /// 0070265 // necrotic cell death // not recorded 0001891 // phagocytic cup // inferred from electronic annotation /// 0001891 // phagocytic cup // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded /// 0055037 // recycling endosome // inferred from electronic annotation /// 0055037 // recycling endosome // not recorded 0005125 // cytokine activity // not recorded /// 0005125 // cytokine activity // traceable author statement /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005164 // tumor necrosis factor receptor binding // inferred from direct assay /// 0005164 // tumor necrosis factor receptor binding // not recorded /// 0005164 // tumor necrosis factor receptor binding // traceable author statement /// 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1387692_a_at M97656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M97656.1 /DB_XREF=gi:207062 /FEA=FLmRNA /CNT=5 /TID=Rn.42915.1 /TIER=FL /STK=1 /UG=Rn.42915 /LL=25033 /UG_GENE=Sstr1 /DEF=Rattus norvegicus somatostatin receptor mRNA, complete cds. /PROD=somatostatin receptor /FL=gb:NM_012719.1 gb:M97656.1 M97656 somatostatin receptor 1 Sstr1 25033 NM_012719 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007215 // glutamate signaling pathway // not recorded /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007268 // synaptic transmission // not recorded /// 0007283 // spermatogenesis // inferred from expression pattern /// 0021549 // cerebellum development // inferred from expression pattern /// 0030217 // T cell differentiation // non-traceable author statement /// 0030900 // forebrain development // inferred from expression pattern /// 0042594 // response to starvation // inferred from expression pattern /// 0071392 // cellular response to estradiol stimulus // inferred from expression pattern 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004994 // somatostatin receptor activity // inferred from mutant phenotype /// 0004994 // somatostatin receptor activity // not recorded /// 0004994 // somatostatin receptor activity // inferred from electronic annotation 1387693_a_at M95413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M95413.1 /DB_XREF=gi:204431 /FEA=FLmRNA /CNT=4 /TID=Rn.32110.1 /TIER=FL /STK=1 /UG=Rn.32110 /LL=116509 /UG_GENE=Glyt1 /DEF=Rattus norvegicus (clone GLYT1) glycine transporter gene, complete CDS. /PROD=glycine transporter /FL=gb:M95413.1 gb:NM_053818.1 gb:L13600.1 M95413 solute carrier family 6 (neurotransmitter transporter, glycine), member 9 Slc6a9 116509 NM_053818 0003333 // amino acid transmembrane transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from electronic annotation /// 0015816 // glycine transport // not recorded 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005283 // sodium:amino acid symporter activity // inferred from electronic annotation /// 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0015187 // glycine transmembrane transporter activity // not recorded /// 0015187 // glycine transmembrane transporter activity // traceable author statement /// 0015293 // symporter activity // inferred from electronic annotation 1387694_at U12425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U12425.1 /DB_XREF=gi:548083 /FEA=FLmRNA /CNT=4 /TID=Rn.10054.1 /TIER=FL /STK=1 /UG=Rn.10054 /LL=85258 /UG_GENE=LOC85258 /DEF=Rattus norvegicus olfactory cyclic nucleotide-gated channel mRNA, complete cds. /PROD=olfactory cyclic nucleotide-gated channel /FL=gb:U12425.1 gb:U12623.1 gb:NM_053496.1 U12425 cyclic nucleotide gated channel alpha 4 Cnga4 85258 NM_053496 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0007608 // sensory perception of smell // not recorded /// 0050896 // response to stimulus // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0017071 // intracellular cyclic nucleotide activated cation channel complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005221 // intracellular cyclic nucleotide activated cation channel activity // inferred from direct assay /// 0030552 // cAMP binding // inferred from electronic annotation 1387695_at AF021936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF021936.1 /DB_XREF=gi:2736152 /GEN=MRCK-beta /FEA=FLmRNA /CNT=3 /TID=Rn.10872.1 /TIER=FL /STK=1 /UG=Rn.10872 /LL=113960 /DEF=Rattus norvegicus myotonic dystrophy kinase-related Cdc42-binding kinase MRCK-beta (MRCK-beta) mRNA, complete cds. /PROD=myotonic dystrophy kinase-related Cdc42-bindingkinase MRCK-beta /FL=gb:NM_053620.1 gb:AF021936.1 AF021936 CDC42 binding protein kinase beta (DMPK-like) Cdc42bpb 113960 NM_053620 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from mutant phenotype /// 0031532 // actin cytoskeleton reorganization // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from sequence or structural similarity /// 0031252 // cell leading edge // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1387696_a_at X61159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X61159.1 /DB_XREF=gi:288344 /FEA=mRNA /CNT=1 /TID=Rn.10379.2 /TIER=ConsEnd /STK=0 /UG=Rn.10379 /LL=24397 /UG_GENE=Glra2 /DEF=R.norvegicus mRNA for inhibitory glycine receptor alpha 2A subunit. /PROD=inhibitory glycine receptor alpha 2A subunit X61159 glycine receptor, alpha 2 Glra2 24397 NM_012568 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006811 // ion transport // not recorded /// 0006821 // chloride transport // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007416 // synapse assembly // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0016594 // glycine binding // inferred from electronic annotation /// 0016594 // glycine binding // not recorded /// 0016934 // extracellular-glycine-gated chloride channel activity // inferred from electronic annotation /// 0016934 // extracellular-glycine-gated chloride channel activity // not recorded /// 0016934 // extracellular-glycine-gated chloride channel activity // traceable author statement /// 0022824 // transmitter-gated ion channel activity // inferred from electronic annotation 1387697_at AF185637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF185637.1 /DB_XREF=gi:6625693 /GEN=Eag2 /FEA=FLmRNA /CNT=3 /TID=Rn.48753.1 /TIER=FL /STK=1 /UG=Rn.48753 /LL=171146 /DEF=Rattus norvegicus potasium channel Eag2 (Eag2) mRNA, complete cds. /PROD=potasium channel Eag2 /FL=gb:AF185637.1 gb:NM_133610.1 AF185637 potassium voltage-gated channel, subfamily H (eag-related), member 5 Kcnh5 171146 NM_133610 0000160 // two-component signal transduction system (phosphorelay) // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000155 // two-component sensor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation 1387698_at AB043638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB043638.1 /DB_XREF=gi:8096670 /GEN=kir6.2 /FEA=FLmRNA /CNT=3 /TID=Rn.3985.1 /TIER=FL /STK=1 /UG=Rn.3985 /LL=83535 /DEF=Rattus norvegicus mRNA for ATP-sensitive K+ channel subunit Kir6.2, complete cds. /PROD=ATP-sensitive K+ channel subunit Kir6.2 /FL=gb:U44897.1 gb:AB043638.1 gb:NM_031358.2 AB043638 potassium inwardly rectifying channel, subfamily J, member 11 Kcnj11 83535 NM_031358 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from direct assay /// 0006813 // potassium ion transport // inferred from mutant phenotype /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0010107 // potassium ion import // inferred from electronic annotation /// 0010107 // potassium ion import // not recorded /// 0033198 // response to ATP // inferred from electronic annotation /// 0033198 // response to ATP // not recorded /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0034765 // regulation of ion transmembrane transport // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0046676 // negative regulation of insulin secretion // inferred from electronic annotation /// 0046676 // negative regulation of insulin secretion // not recorded /// 0050796 // regulation of insulin secretion // not recorded /// 0050796 // regulation of insulin secretion // inferred from electronic annotation /// 0050877 // neurological system process // inferred from electronic annotation /// 0050877 // neurological system process // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008282 // ATP-sensitive potassium channel complex // inferred from direct assay /// 0008282 // ATP-sensitive potassium channel complex // not recorded /// 0008282 // ATP-sensitive potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030315 // T-tubule // inferred from direct assay /// 0042383 // sarcolemma // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0015272 // ATP-activated inward rectifier potassium channel activity // inferred from direct assay /// 0015272 // ATP-activated inward rectifier potassium channel activity // inferred from mutant phenotype /// 0015272 // ATP-activated inward rectifier potassium channel activity // not recorded /// 0015272 // ATP-activated inward rectifier potassium channel activity // inferred from electronic annotation 1387699_at AF126808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF126808.1 /DB_XREF=gi:5281307 /FEA=FLmRNA /CNT=3 /TID=Rn.10384.1 /TIER=FL /STK=1 /UG=Rn.10384 /LL=25411 /UG_GENE=Cncg4 /DEF=Rattus norvegicus olfactory cyclic nucleotide-gated ion channel alpha subunit mRNA, complete cds. /PROD=olfactory cyclic nucleotide-gated ion channelalpha subunit /FL=gb:NM_012928.1 gb:AF126808.1 AF126808 cyclic nucleotide gated channel alpha 2 Cnga2 25411 NM_012928 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0007608 // sensory perception of smell // inferred from expression pattern /// 0007608 // sensory perception of smell // not recorded /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0050896 // response to stimulus // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005216 // ion channel activity // not recorded /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0030552 // cAMP binding // inferred from electronic annotation 1387700_at M88096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M88096.1 /DB_XREF=gi:203383 /GEN=CCKAR /FEA=FLmRNA /CNT=3 /TID=Rn.10184.1 /TIER=FL /STK=1 /UG=Rn.10184 /LL=24889 /DEF=Rat cholecystokinin receptor mRNA, complete cds. /PROD=cholecystokinin receptor /FL=gb:NM_012688.1 gb:M88096.1 M88096 cholecystokinin A receptor Cckar 24889 NM_012688 0001659 // temperature homeostasis // inferred from mutant phenotype /// 0001696 // gastric acid secretion // inferred from direct assay /// 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0002023 // reduction of food intake in response to dietary excess // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0007631 // feeding behavior // inferred from direct assay /// 0009314 // response to radiation // inferred from expression pattern /// 0009408 // response to heat // inferred from mutant phenotype /// 0030073 // insulin secretion // inferred from direct assay /// 0030157 // pancreatic juice secretion // inferred from mutant phenotype /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0031016 // pancreas development // inferred from expression pattern /// 0031100 // organ regeneration // inferred from expression pattern /// 0031532 // actin cytoskeleton reorganization // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0042594 // response to starvation // inferred from mutant phenotype /// 0042755 // eating behavior // inferred from mutant phenotype /// 0043266 // regulation of potassium ion transport // inferred from direct assay /// 0046883 // regulation of hormone secretion // inferred from direct assay /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051929 // positive regulation of calcium ion transport via voltage-gated calcium channel activity // inferred from direct assay /// 0090274 // positive regulation of somatostatin secretion // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043195 // terminal button // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004951 // cholecystokinin receptor activity // inferred from direct assay /// 0004951 // cholecystokinin receptor activity // traceable author statement /// 0004951 // cholecystokinin receptor activity // inferred from electronic annotation 1387701_at NM_017017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017017.1 /DB_XREF=gi:8393525 /GEN=Hgf /FEA=FLmRNA /CNT=3 /TID=Rn.10468.1 /TIER=FL /STK=1 /UG=Rn.10468 /LL=24446 /DEF=Rattus norvegicus Hepatocyte growth factor (scatter factor) (Hgf), mRNA. /PROD=hepatocyte growth factor (scatter factor) /FL=gb:NM_017017.1 NM_017017 hepatocyte growth factor Hgf 24446 NM_017017 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006928 // cellular component movement // traceable author statement /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0031100 // organ regeneration // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0048012 // hepatocyte growth factor receptor signaling pathway // inferred from electronic annotation /// 0048012 // hepatocyte growth factor receptor signaling pathway // not recorded /// 0051450 // myoblast proliferation // inferred from electronic annotation /// 0051450 // myoblast proliferation // not recorded /// 0060665 // regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling // inferred from electronic annotation /// 0060665 // regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling // not recorded 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0031093 // platelet alpha granule lumen // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005171 // hepatocyte growth factor receptor binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from mutant phenotype /// 0008083 // growth factor activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay 1387702_at U30290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U30290.1 /DB_XREF=gi:1049071 /FEA=FLmRNA /CNT=3 /TID=Rn.10213.1 /TIER=FL /STK=1 /UG=Rn.10213 /LL=50577 /UG_GENE=Galr1 /DEF=Rattus norvegicus galanin receptor GALR1 mRNA, complete cds. /PROD=galanin receptor GALR1 /FL=gb:U30290.1 gb:NM_012958.1 U30290 galanin receptor 1 Galr1 50577 NM_012958 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from mutant phenotype 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004966 // galanin receptor activity // inferred from direct assay /// 0004966 // galanin receptor activity // inferred from mutant phenotype /// 0004966 // galanin receptor activity // inferred from electronic annotation /// 0042923 // neuropeptide binding // inferred from direct assay /// 0042923 // neuropeptide binding // inferred from mutant phenotype 1387703_a_at AF106659 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF106659.1 /DB_XREF=gi:6492125 /GEN=ubp69 /FEA=FLmRNA /CNT=3 /TID=Rn.19491.1 /TIER=FL /STK=1 /UG=Rn.19491 /LL=115771 /DEF=Rattus norvegicus deubiquitinating enzyme Ubp69 (ubp69) mRNA, complete cds. /PROD=deubiquitinating enzyme Ubp69 /FL=gb:NM_053774.1 gb:AF106659.1 gb:AF202453.1 AF106659 ubiquitin specific peptidase 2 Usp2 115771 NM_053774 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0016579 // protein deubiquitination // inferred from direct assay /// 0016579 // protein deubiquitination // not recorded /// 0016579 // protein deubiquitination // inferred from sequence or structural similarity /// 0045931 // positive regulation of mitotic cell cycle // not recorded /// 0045931 // positive regulation of mitotic cell cycle // inferred from sequence or structural similarity /// 0048642 // negative regulation of skeletal muscle tissue development // inferred from direct assay /// 0048643 // positive regulation of skeletal muscle tissue development // inferred from direct assay /// 0050821 // protein stabilization // not recorded /// 0050821 // protein stabilization // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // inferred from mutant phenotype /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0004221 // ubiquitin thiolesterase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030332 // cyclin binding // not recorded /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1387704_at NM_012689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012689.1 /DB_XREF=gi:6978814 /GEN=Esr1 /FEA=FLmRNA /CNT=3 /TID=Rn.10595.1 /TIER=FL /STK=1 /UG=Rn.10595 /LL=24890 /DEF=Rattus norvegicus Estrogen receptor 1 (Esr1), mRNA. /PROD=estrogen receptor 1 /FL=gb:NM_012689.1 NM_012689 estrogen receptor 1 Esr1 24890 NM_012689 0001547 // antral ovarian follicle growth // inferred from electronic annotation /// 0001547 // antral ovarian follicle growth // not recorded /// 0002064 // epithelial cell development // inferred from electronic annotation /// 0002064 // epithelial cell development // not recorded /// 0002076 // osteoblast development // inferred from expression pattern /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0008209 // androgen metabolic process // inferred from electronic annotation /// 0008209 // androgen metabolic process // not recorded /// 0008584 // male gonad development // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032355 // response to estradiol stimulus // not recorded /// 0043526 // neuroprotection // inferred from direct assay /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045885 // positive regulation of survival gene product expression // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0048386 // positive regulation of retinoic acid receptor signaling pathway // inferred from electronic annotation /// 0048386 // positive regulation of retinoic acid receptor signaling pathway // not recorded /// 0060065 // uterus development // inferred from electronic annotation /// 0060065 // uterus development // not recorded /// 0060068 // vagina development // inferred from electronic annotation /// 0060068 // vagina development // not recorded /// 0060523 // prostate epithelial cord elongation // inferred from electronic annotation /// 0060523 // prostate epithelial cord elongation // not recorded /// 0060527 // prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis // inferred from electronic annotation /// 0060527 // prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis // not recorded /// 0060687 // regulation of branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0060687 // regulation of branching involved in prostate gland morphogenesis // not recorded /// 0060745 // mammary gland branching involved in pregnancy // inferred from electronic annotation /// 0060745 // mammary gland branching involved in pregnancy // not recorded /// 0060749 // mammary gland alveolus development // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // not recorded /// 0060750 // epithelial cell proliferation involved in mammary gland duct elongation // inferred from electronic annotation /// 0060750 // epithelial cell proliferation involved in mammary gland duct elongation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0030315 // T-tubule // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // inferred from mutant phenotype /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // not recorded /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005496 // steroid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0030284 // estrogen receptor activity // inferred from direct assay /// 0030284 // estrogen receptor activity // traceable author statement /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0032403 // protein complex binding // inferred from direct assay /// 0034056 // estrogen response element binding // inferred from electronic annotation /// 0034056 // estrogen response element binding // not recorded /// 0042562 // hormone binding // inferred from mutant phenotype /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387705_at U04738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U04738.1 /DB_XREF=gi:469168 /FEA=FLmRNA /CNT=3 /TID=Rn.9936.1 /TIER=FL /STK=1 /UG=Rn.9936 /LL=25555 /UG_GENE=Sstr4 /DEF=Rattus norvegicus Sprague-Dawley major hippocampal somatostatin receptor (SSTR4) mRNA, complete cds. /PROD=major hippocampal somatostatin receptor /FL=gb:NM_013036.1 gb:U04738.1 U04738 somatostatin receptor 4 Sstr4 25555 NM_013036 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0016477 // cell migration // inferred from direct assay /// 0016477 // cell migration // inferred from mutant phenotype /// 0019369 // arachidonic acid metabolic process // inferred from direct assay /// 0030815 // negative regulation of cAMP metabolic process // inferred from direct assay /// 0030900 // forebrain development // inferred from expression pattern /// 0043410 // positive regulation of MAPKKK cascade // inferred from direct assay /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004994 // somatostatin receptor activity // inferred from direct assay /// 0004994 // somatostatin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1387706_at NM_080586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080586.1 /DB_XREF=gi:18034792 /GEN=Gabrg1 /FEA=FLmRNA /CNT=3 /TID=Rn.10366.1 /TIER=FL /STK=1 /UG=Rn.10366 /LL=140674 /DEF=Rattus norvegicus gamma-aminobutyric acid (GABA) A receptor, gamma 1 (Gabrg1), mRNA. /PROD=gamma-aminobutyric acid (GABA) A receptor, gamma1 /FL=gb:NM_080586.1 NM_080586 gamma-aminobutyric acid (GABA) A receptor, gamma 1 Gabrg1 140674 NM_080586 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004890 // GABA-A receptor activity // inferred from direct assay /// 0004890 // GABA-A receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation 1387707_at NM_017102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017102.1 /DB_XREF=gi:8394300 /GEN=Slc2a3 /FEA=FLmRNA /CNT=3 /TID=Rn.44400.1 /TIER=FL /STK=1 /UG=Rn.44400 /LL=25551 /DEF=Rattus norvegicus Solute carrier family 2 A3 (neuron glucose transporter) (Slc2a3), mRNA. /PROD=solute carrier family 2 A3 (neuron glucosetransporter) /FL=gb:U17978.1 gb:NM_017102.1 NM_017102 solute carrier family 2 (facilitated glucose transporter), member 3 Slc2a3 25551 NM_017102 0006810 // transport // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0015749 // monosaccharide transport // inferred from direct assay /// 0015758 // glucose transport // inferred from direct assay /// 0015758 // glucose transport // not recorded /// 0015758 // glucose transport // traceable author statement /// 0015758 // glucose transport // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0046323 // glucose import // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070837 // dehydroascorbic acid transport // inferred from direct assay /// 0070837 // dehydroascorbic acid transport // not recorded /// 0070837 // dehydroascorbic acid transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0005355 // glucose transmembrane transporter activity // traceable author statement /// 0005355 // glucose transmembrane transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005536 // glucose binding // inferred from direct assay /// 0015145 // monosaccharide transmembrane transporter activity // inferred from direct assay /// 0016936 // galactoside binding // inferred from direct assay /// 0019900 // kinase binding // inferred from physical interaction /// 0022891 // substrate-specific transmembrane transporter activity // inferred from electronic annotation /// 0033222 // xylose binding // inferred from direct assay /// 0033300 // dehydroascorbic acid transporter activity // inferred from direct assay /// 0033300 // dehydroascorbic acid transporter activity // not recorded /// 0033300 // dehydroascorbic acid transporter activity // inferred from electronic annotation /// 0055056 // D-glucose transmembrane transporter activity // inferred from direct assay /// 0055056 // D-glucose transmembrane transporter activity // not recorded /// 0055056 // D-glucose transmembrane transporter activity // inferred from electronic annotation 1387708_at U79031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U79031.1 /DB_XREF=gi:3282234 /FEA=FLmRNA /CNT=3 /TID=Rn.44299.1 /TIER=FL /STK=1 /UG=Rn.44299 /LL=25083 /UG_GENE=Adra2a /DEF=Rattus norvegicus alpha2D adrenergic receptor mRNA, complete cds. /PROD=alpha2D adrenergic receptor /FL=gb:U79031.1 gb:NM_012739.1 U79031 adrenergic, alpha-2A-, receptor Adra2a 25083 NM_012739 0001819 // positive regulation of cytokine production // not recorded /// 0006260 // DNA replication // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from expression pattern /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007202 // activation of phospholipase C activity // not recorded /// 0030335 // positive regulation of cell migration // not recorded /// 0030818 // negative regulation of cAMP biosynthetic process // not recorded /// 0032147 // activation of protein kinase activity // not recorded /// 0032148 // activation of protein kinase B activity // not recorded /// 0032870 // cellular response to hormone stimulus // not recorded /// 0042593 // glucose homeostasis // inferred from mutant phenotype /// 0042593 // glucose homeostasis // not recorded /// 0042596 // fear response // not recorded /// 0043406 // positive regulation of MAP kinase activity // not recorded /// 0045741 // positive regulation of epidermal growth factor receptor activity // not recorded /// 0045955 // negative regulation of calcium ion-dependent exocytosis // inferred from mutant phenotype /// 0046676 // negative regulation of insulin secretion // inferred from mutant phenotype /// 0046676 // negative regulation of insulin secretion // not recorded /// 0050995 // negative regulation of lipid catabolic process // not recorded /// 0051044 // positive regulation of membrane protein ectodomain proteolysis // not recorded /// 0071333 // cellular response to glucose stimulus // inferred from mutant phenotype /// 0071333 // cellular response to glucose stimulus // not recorded /// 0090303 // positive regulation of wound healing // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from expression pattern /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043235 // receptor complex // not recorded /// 0045202 // synapse // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004935 // adrenergic receptor activity // inferred from electronic annotation /// 0004935 // adrenergic receptor activity // not recorded /// 0004938 // alpha2-adrenergic receptor activity // inferred from direct assay /// 0004938 // alpha2-adrenergic receptor activity // not recorded /// 0004938 // alpha2-adrenergic receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019901 // protein kinase binding // not recorded /// 0031696 // alpha-2C adrenergic receptor binding // not recorded /// 0031996 // thioesterase binding // not recorded /// 0032795 // heterotrimeric G-protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded /// 0051379 // epinephrine binding // not recorded /// 0051380 // norepinephrine binding // not recorded 1387709_at AY032728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY032728.1 /DB_XREF=gi:15430278 /FEA=FLmRNA /CNT=3 /TID=Rn.10796.1 /TIER=FL /STK=1 /UG=Rn.10796 /LL=83570 /UG_GENE=Figf /DEF=Rattus norvegicus VEGF-D mRNA, complete cds. /PROD=VEGF-D /FL=gb:AF014827.1 gb:NM_031761.1 gb:AY032728.1 AY032728 c-fos induced growth factor Figf 360457 NM_031761 0001525 // angiogenesis // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from expression pattern /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030947 // regulation of vascular endothelial growth factor receptor signaling pathway // inferred from mutant phenotype /// 0032755 // positive regulation of interleukin-6 production // inferred from mutant phenotype /// 0045766 // positive regulation of angiogenesis // traceable author statement /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from mutant phenotype /// 0048010 // vascular endothelial growth factor receptor signaling pathway // not recorded /// 0050930 // induction of positive chemotaxis // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0060754 // positive regulation of mast cell chemotaxis // not recorded /// 0070555 // response to interleukin-1 // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // not recorded 0005172 // vascular endothelial growth factor receptor binding // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0008083 // growth factor activity // traceable author statement /// 0042056 // chemoattractant activity // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043184 // vascular endothelial growth factor receptor 2 binding // not recorded /// 0043185 // vascular endothelial growth factor receptor 3 binding // not recorded 1387710_at L81169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L81169.1 /DB_XREF=gi:18654463 /FEA=FLmRNA /CNT=3 /TID=Rn.6841.1 /TIER=FL /STK=1 /UG=Rn.6841 /LL=25342 /UG_GENE=Oxtr /DEF=Rattus norvegicus oxytocin receptor mRNA, complete cds. /PROD=oxytocin receptor /FL=gb:NM_012871.2 gb:L81169.1 L81169 oxytocin receptor Oxtr 25342 NM_012871 0001967 // suckling behavior // inferred from mutant phenotype /// 0001975 // response to amphetamine // inferred from mutant phenotype /// 0006950 // response to stress // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0007507 // heart development // inferred from expression pattern /// 0007565 // female pregnancy // inferred from expression pattern /// 0007613 // memory // inferred from mutant phenotype /// 0010701 // positive regulation of norepinephrine secretion // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0021537 // telencephalon development // inferred from expression pattern /// 0030431 // sleep // inferred from mutant phenotype /// 0032230 // positive regulation of synaptic transmission, GABAergic // inferred from mutant phenotype /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0034059 // response to anoxia // inferred from mutant phenotype /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0035176 // social behavior // inferred from mutant phenotype /// 0042220 // response to cocaine // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042711 // maternal behavior // inferred from mutant phenotype /// 0042713 // sperm ejaculation // inferred from mutant phenotype /// 0042755 // eating behavior // inferred from mutant phenotype /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0044058 // regulation of digestive system process // inferred from mutant phenotype /// 0045777 // positive regulation of blood pressure // inferred from electronic annotation /// 0045777 // positive regulation of blood pressure // not recorded /// 0048545 // response to steroid hormone stimulus // inferred from mutant phenotype /// 0048565 // digestive tract development // inferred from expression pattern /// 0051965 // positive regulation of synaptogenesis // inferred from mutant phenotype /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype /// 0060137 // maternal process involved in parturition // inferred from expression pattern /// 0060206 // estrous cycle phase // inferred from expression pattern /// 0060406 // positive regulation of penile erection // inferred from mutant phenotype /// 0060455 // negative regulation of gastric acid secretion // inferred from mutant phenotype /// 0070371 // ERK1 and ERK2 cascade // inferred from mutant phenotype /// 0070474 // positive regulation of uterine smooth muscle contraction // inferred from mutant phenotype 0005886 // plasma membrane // inferred from electronic annotation /// 0005902 // microvillus // inferred from direct assay /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004990 // oxytocin receptor activity // inferred from direct assay /// 0004990 // oxytocin receptor activity // inferred from electronic annotation /// 0005000 // vasopressin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0017046 // peptide hormone binding // inferred from direct assay 1387711_at L02926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L02926.1 /DB_XREF=gi:204903 /GEN=IL-10 /FEA=FLmRNA /CNT=3 /TID=Rn.9868.1 /TIER=FL /STK=1 /UG=Rn.9868 /LL=25325 /DEF=Rat interleukin 10 (IL-10) mRNA, complete cds. /PROD=interleukin 10 /FL=gb:NM_012854.1 gb:L02926.1 L02926 interleukin 10 Il10 25325 NM_012854 0001818 // negative regulation of cytokine production // inferred from mutant phenotype /// 0002237 // response to molecule of bacterial origin // not recorded /// 0002237 // response to molecule of bacterial origin // inferred from sequence or structural similarity /// 0002237 // response to molecule of bacterial origin // inferred from electronic annotation /// 0002740 // negative regulation of cytokine secretion involved in immune response // not recorded /// 0002740 // negative regulation of cytokine secretion involved in immune response // inferred from sequence or structural similarity /// 0002740 // negative regulation of cytokine secretion involved in immune response // inferred from electronic annotation /// 0002875 // negative regulation of chronic inflammatory response to antigenic stimulus // inferred from electronic annotation /// 0002875 // negative regulation of chronic inflammatory response to antigenic stimulus // not recorded /// 0002904 // positive regulation of B cell apoptosis // not recorded /// 0002904 // positive regulation of B cell apoptosis // inferred from sequence or structural similarity /// 0002904 // positive regulation of B cell apoptosis // inferred from electronic annotation /// 0006950 // response to stress // inferred from expression pattern /// 0006954 // inflammatory response // not recorded /// 0006954 // inflammatory response // inferred from sequence or structural similarity /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from mutant phenotype /// 0006955 // immune response // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from expression pattern /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0014823 // response to activity // inferred from expression pattern /// 0030886 // negative regulation of myeloid dendritic cell activation // inferred from electronic annotation /// 0030886 // negative regulation of myeloid dendritic cell activation // not recorded /// 0030889 // negative regulation of B cell proliferation // not recorded /// 0030889 // negative regulation of B cell proliferation // inferred from sequence or structural similarity /// 0030889 // negative regulation of B cell proliferation // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032689 // negative regulation of interferon-gamma production // inferred from electronic annotation /// 0032689 // negative regulation of interferon-gamma production // not recorded /// 0032695 // negative regulation of interleukin-12 production // inferred from electronic annotation /// 0032695 // negative regulation of interleukin-12 production // not recorded /// 0032715 // negative regulation of interleukin-6 production // not recorded /// 0032715 // negative regulation of interleukin-6 production // inferred from sequence or structural similarity /// 0032715 // negative regulation of interleukin-6 production // inferred from electronic annotation /// 0032720 // negative regulation of tumor necrosis factor production // inferred from electronic annotation /// 0032720 // negative regulation of tumor necrosis factor production // not recorded /// 0032800 // receptor biosynthetic process // not recorded /// 0032800 // receptor biosynthetic process // inferred from sequence or structural similarity /// 0032800 // receptor biosynthetic process // inferred from electronic annotation /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0034465 // response to carbon monoxide // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042536 // negative regulation of tumor necrosis factor biosynthetic process // inferred from direct assay /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0042742 // defense response to bacterium // not recorded /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from sequence or structural similarity /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0044130 // negative regulation of growth of symbiont in host // inferred from electronic annotation /// 0044130 // negative regulation of growth of symbiont in host // not recorded /// 0045019 // negative regulation of nitric oxide biosynthetic process // inferred from direct assay /// 0045348 // positive regulation of MHC class II biosynthetic process // inferred from electronic annotation /// 0045348 // positive regulation of MHC class II biosynthetic process // not recorded /// 0050715 // positive regulation of cytokine secretion // not recorded /// 0050715 // positive regulation of cytokine secretion // inferred from sequence or structural similarity /// 0050715 // positive regulation of cytokine secretion // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // inferred from direct assay /// 0051045 // negative regulation of membrane protein ectodomain proteolysis // not recorded /// 0051045 // negative regulation of membrane protein ectodomain proteolysis // inferred from sequence or structural similarity /// 0051045 // negative regulation of membrane protein ectodomain proteolysis // inferred from electronic annotation /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0051091 // positive regulation of transcription factor activity // inferred from sequence or structural similarity /// 0051091 // positive regulation of transcription factor activity // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from sequence or structural similarity /// 0051384 // response to glucocorticoid stimulus // inferred from electronic annotation /// 0051930 // regulation of sensory perception of pain // inferred from direct assay /// 0060670 // branching involved in embryonic placenta morphogenesis // inferred from electronic annotation /// 0060670 // branching involved in embryonic placenta morphogenesis // not recorded /// 0071392 // cellular response to estradiol stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from mutant phenotype /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005141 // interleukin-10 receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387712_at NM_022687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022687.1 /DB_XREF=gi:12083636 /GEN=Hes3 /FEA=FLmRNA /CNT=3 /TID=Rn.48807.1 /TIER=FL /STK=1 /UG=Rn.48807 /LL=64628 /DEF=Rattus norvegicus transcription factor HES-3 (Hes3), mRNA. /PROD=transcription factor HES-3 /FL=gb:NM_022687.1 NM_022687 hairy and enhancer of split 3 (Drosophila) Hes3 64628 NM_022687 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016481 // negative regulation of transcription // inferred from direct assay /// 0021555 // midbrain-hindbrain boundary morphogenesis // inferred from electronic annotation /// 0021555 // midbrain-hindbrain boundary morphogenesis // not recorded /// 0021557 // oculomotor nerve development // inferred from electronic annotation /// 0021557 // oculomotor nerve development // not recorded /// 0021558 // trochlear nerve development // inferred from electronic annotation /// 0021558 // trochlear nerve development // not recorded /// 0021575 // hindbrain morphogenesis // inferred from electronic annotation /// 0021575 // hindbrain morphogenesis // not recorded /// 0021915 // neural tube development // inferred from electronic annotation /// 0021915 // neural tube development // not recorded /// 0030901 // midbrain development // inferred from electronic annotation /// 0030901 // midbrain development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0050767 // regulation of neurogenesis // inferred from electronic annotation /// 0050767 // regulation of neurogenesis // not recorded /// 0060164 // regulation of timing of neuron differentiation // inferred from electronic annotation /// 0060164 // regulation of timing of neuron differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1387713_a_at M17153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M17153.1 /DB_XREF=gi:206665 /FEA=FLmRNA /CNT=3 /TID=Rn.9677.1 /TIER=FL /STK=1 /UG=Rn.9677 /LL=25047 /UG_GENE=Fcer1a /UG_TITLE=Fc fragment of Ige, high affinity I, receptor for, alpha polypeptide /DEF=Rat receptor with high affinity for immunoglobulin E, alpha subunit (Fc-epsilon-RI(alpha) mRNA, complete cds. /FL=gb:M17153.1 gb:NM_012724.1 M17153 Fc fragment of IgE, high affinity I, receptor for; alpha polypeptide Fcer1a 25047 NM_012724 0000187 // activation of MAPK activity // not recorded /// 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0001812 // positive regulation of type I hypersensitivity // inferred from electronic annotation /// 0001812 // positive regulation of type I hypersensitivity // not recorded /// 0001820 // serotonin secretion // inferred from electronic annotation /// 0001820 // serotonin secretion // not recorded /// 0006955 // immune response // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007257 // activation of JUN kinase activity // inferred from electronic annotation /// 0007257 // activation of JUN kinase activity // not recorded /// 0019370 // leukotriene biosynthetic process // inferred from electronic annotation /// 0019370 // leukotriene biosynthetic process // not recorded /// 0043306 // positive regulation of mast cell degranulation // inferred from electronic annotation /// 0043306 // positive regulation of mast cell degranulation // not recorded /// 0045401 // positive regulation of interleukin-3 biosynthetic process // inferred from electronic annotation /// 0045401 // positive regulation of interleukin-3 biosynthetic process // not recorded /// 0045425 // positive regulation of granulocyte macrophage colony-stimulating factor biosynthetic process // inferred from electronic annotation /// 0045425 // positive regulation of granulocyte macrophage colony-stimulating factor biosynthetic process // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050850 // positive regulation of calcium-mediated signaling // inferred from electronic annotation /// 0050850 // positive regulation of calcium-mediated signaling // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0019767 // IgE receptor activity // not recorded /// 0019767 // IgE receptor activity // inferred from electronic annotation /// 0019768 // high affinity IgE receptor activity // traceable author statement /// 0019863 // IgE binding // not recorded /// 0019863 // IgE binding // traceable author statement /// 0019863 // IgE binding // inferred from electronic annotation 1387714_at AB031423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB031423.1 /DB_XREF=gi:5790252 /GEN=CREM /FEA=FLmRNA /CNT=3 /TID=Rn.10251.1 /TIER=FL /STK=1 /UG=Rn.10251 /LL=25620 /DEF=Rattus norvegicus mRNA for CREM-17X, complete cds. /PROD=CREM-17X /FL=gb:NM_013086.1 gb:AB031423.1 gb:U04835.1 AB031423 cAMP responsive element modulator Crem 25620 NM_001110860 /// NM_017334 0006006 // glucose metabolic process // inferred from expression pattern /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0006631 // fatty acid metabolic process // inferred from expression pattern /// 0006687 // glycosphingolipid metabolic process // inferred from electronic annotation /// 0006687 // glycosphingolipid metabolic process // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0019933 // cAMP-mediated signaling // traceable author statement /// 0042752 // regulation of circadian rhythm // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048384 // retinoic acid receptor signaling pathway // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1387715_at NM_133537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133537.1 /DB_XREF=gi:19424195 /GEN=Expi /FEA=FLmRNA /CNT=3 /TID=Rn.10437.1 /TIER=FL /STK=1 /UG=Rn.10437 /LL=171059 /DEF=Rattus norvegicus extracellular proteinase inhibitor (Expi), mRNA. /PROD=extracellular proteinase inhibitor /FL=gb:NM_133537.1 NM_133537 extracellular proteinase inhibitor Expi 171059 NM_133537 0005576 // extracellular region // inferred from electronic annotation 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1387716_at NM_013070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013070.1 /DB_XREF=gi:6981695 /GEN=Utrn /FEA=FLmRNA /CNT=2 /TID=Rn.9901.1 /TIER=FL /STK=1 /UG=Rn.9901 /LL=25600 /DEF=Rattus norvegicus Utrophin (Utrn), mRNA. /PROD=utrophin (homologous to dystrophin) /FL=gb:NM_013070.1 NM_013070 utrophin Utrn 25600 NM_013070 0001954 // positive regulation of cell-matrix adhesion // not recorded /// 0001954 // positive regulation of cell-matrix adhesion // inferred from electronic annotation /// 0007528 // neuromuscular junction development // inferred from direct assay 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0016010 // dystrophin-associated glycoprotein complex // not recorded /// 0016010 // dystrophin-associated glycoprotein complex // inferred from electronic annotation /// 0030054 // cell junction // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030426 // growth cone // inferred from direct assay /// 0030864 // cortical actin cytoskeleton // inferred from direct assay /// 0031594 // neuromuscular junction // inferred from direct assay /// 0031594 // neuromuscular junction // not recorded /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0045202 // synapse // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from direct assay 1387717_at NM_053478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053478.1 /DB_XREF=gi:16758231 /GEN=Plcb2 /FEA=FLmRNA /CNT=2 /TID=Rn.30033.1 /TIER=FL /STK=1 /UG=Rn.30033 /LL=85240 /DEF=Rattus norvegicus phospholipase C beta 2 (Plcb2), mRNA. /PROD=phospholipase C beta 2 /FL=gb:NM_053478.1 NM_053478 phospholipase C, beta 2 Plcb2 85240 NM_053478 0001580 // detection of chemical stimulus involved in sensory perception of bitter taste // inferred from direct assay /// 0001580 // detection of chemical stimulus involved in sensory perception of bitter taste // inferred from mutant phenotype /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0009395 // phospholipid catabolic process // non-traceable author statement /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0050913 // sensory perception of bitter taste // not recorded /// 0050913 // sensory perception of bitter taste // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay 0004435 // phosphoinositide phospholipase C activity // non-traceable author statement /// 0004435 // phosphoinositide phospholipase C activity // inferred from electronic annotation /// 0004629 // phospholipase C activity // inferred from mutant phenotype /// 0004629 // phospholipase C activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005543 // phospholipid binding // inferred from direct assay /// 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387718_at NM_019256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019256.1 /DB_XREF=gi:9506942 /GEN=P2rx7 /FEA=FLmRNA /CNT=2 /TID=Rn.10510.1 /TIER=FL /STK=1 /UG=Rn.10510 /LL=29665 /DEF=Rattus norvegicus purinergic receptor P2X, ligand-gated ion channel, 7 (P2rx7), mRNA. /PROD=purinergic receptor P2X, ligand-gated ionchannel, 7 /FL=gb:NM_019256.1 NM_019256 purinergic receptor P2X, ligand-gated ion channel, 7 P2rx7 29665 NM_019256 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0001845 // phagolysosome assembly // inferred from electronic annotation /// 0001845 // phagolysosome assembly // not recorded /// 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0001916 // positive regulation of T cell mediated cytotoxicity // not recorded /// 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0002028 // regulation of sodium ion transport // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0006649 // phospholipid transfer to membrane // inferred from electronic annotation /// 0006649 // phospholipid transfer to membrane // not recorded /// 0006800 // oxygen and reactive oxygen species metabolic process // inferred from electronic annotation /// 0006800 // oxygen and reactive oxygen species metabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006884 // cell volume homeostasis // inferred from electronic annotation /// 0006884 // cell volume homeostasis // not recorded /// 0006900 // membrane budding // inferred from electronic annotation /// 0006900 // membrane budding // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0007009 // plasma membrane organization // inferred from electronic annotation /// 0007009 // plasma membrane organization // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from direct assay /// 0008219 // cell death // not recorded /// 0008219 // cell death // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // not recorded /// 0009617 // response to bacterium // inferred from electronic annotation /// 0009617 // response to bacterium // not recorded /// 0010033 // response to organic substance // not recorded /// 0010033 // response to organic substance // inferred from electronic annotation /// 0010043 // response to zinc ion // inferred from electronic annotation /// 0010043 // response to zinc ion // not recorded /// 0010467 // gene expression // inferred from electronic annotation /// 0010467 // gene expression // not recorded /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from electronic annotation /// 0010524 // positive regulation of calcium ion transport into cytosol // not recorded /// 0014049 // positive regulation of glutamate secretion // inferred from electronic annotation /// 0014049 // positive regulation of glutamate secretion // not recorded /// 0014054 // positive regulation of gamma-aminobutyric acid secretion // inferred from electronic annotation /// 0014054 // positive regulation of gamma-aminobutyric acid secretion // not recorded /// 0014070 // response to organic cyclic substance // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // not recorded /// 0015695 // organic cation transport // traceable author statement /// 0016079 // synaptic vesicle exocytosis // inferred from electronic annotation /// 0016079 // synaptic vesicle exocytosis // not recorded /// 0016485 // protein processing // inferred from electronic annotation /// 0016485 // protein processing // not recorded /// 0019228 // regulation of action potential in neuron // inferred from direct assay /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0019233 // sensory perception of pain // not recorded /// 0019835 // cytolysis // inferred from electronic annotation /// 0019835 // cytolysis // not recorded /// 0030501 // positive regulation of bone mineralization // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // not recorded /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0031668 // cellular response to extracellular stimulus // not recorded /// 0032060 // bleb assembly // inferred from direct assay /// 0032060 // bleb assembly // inferred from electronic annotation /// 0032060 // bleb assembly // not recorded /// 0032308 // positive regulation of prostaglandin secretion // inferred from electronic annotation /// 0032308 // positive regulation of prostaglandin secretion // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0032731 // positive regulation of interleukin-1 beta production // not recorded /// 0032731 // positive regulation of interleukin-1 beta production // inferred from electronic annotation /// 0032755 // positive regulation of interleukin-6 production // inferred from electronic annotation /// 0032755 // positive regulation of interleukin-6 production // not recorded /// 0032963 // collagen metabolic process // inferred from electronic annotation /// 0032963 // collagen metabolic process // not recorded /// 0033198 // response to ATP // inferred from direct assay /// 0033198 // response to ATP // inferred from electronic annotation /// 0033198 // response to ATP // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0034405 // response to fluid shear stress // inferred from electronic annotation /// 0034405 // response to fluid shear stress // not recorded /// 0042098 // T cell proliferation // inferred from electronic annotation /// 0042098 // T cell proliferation // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0042981 // regulation of apoptosis // inferred from direct assay /// 0043029 // T cell homeostasis // inferred from electronic annotation /// 0043029 // T cell homeostasis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043085 // positive regulation of catalytic activity // inferred from electronic annotation /// 0043085 // positive regulation of catalytic activity // not recorded /// 0043132 // NAD transport // inferred from electronic annotation /// 0043132 // NAD transport // not recorded /// 0043409 // negative regulation of MAPKKK cascade // inferred from electronic annotation /// 0043409 // negative regulation of MAPKKK cascade // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0044254 // multicellular organismal protein catabolic process // inferred from electronic annotation /// 0044254 // multicellular organismal protein catabolic process // not recorded /// 0045332 // phospholipid translocation // inferred from electronic annotation /// 0045332 // phospholipid translocation // not recorded /// 0045778 // positive regulation of ossification // not recorded /// 0045778 // positive regulation of ossification // inferred from electronic annotation /// 0045779 // negative regulation of bone resorption // inferred from electronic annotation /// 0045779 // negative regulation of bone resorption // not recorded /// 0045919 // positive regulation of cytolysis // inferred from direct assay /// 0046513 // ceramide biosynthetic process // inferred from electronic annotation /// 0046513 // ceramide biosynthetic process // not recorded /// 0046931 // pore complex assembly // inferred from direct assay /// 0046931 // pore complex assembly // inferred from electronic annotation /// 0046931 // pore complex assembly // inferred from mutant phenotype /// 0046931 // pore complex assembly // not recorded /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // not recorded /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // not recorded /// 0050714 // positive regulation of protein secretion // not recorded /// 0050714 // positive regulation of protein secretion // inferred from electronic annotation /// 0050715 // positive regulation of cytokine secretion // inferred from electronic annotation /// 0050715 // positive regulation of cytokine secretion // not recorded /// 0050717 // positive regulation of interleukin-1 alpha secretion // inferred from electronic annotation /// 0050717 // positive regulation of interleukin-1 alpha secretion // not recorded /// 0050718 // positive regulation of interleukin-1 beta secretion // inferred from direct assay /// 0050718 // positive regulation of interleukin-1 beta secretion // inferred from electronic annotation /// 0050718 // positive regulation of interleukin-1 beta secretion // inferred from mutant phenotype /// 0050718 // positive regulation of interleukin-1 beta secretion // not recorded /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // not recorded /// 0051209 // release of sequestered calcium ion into cytosol // inferred from electronic annotation /// 0051209 // release of sequestered calcium ion into cytosol // not recorded /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0051259 // protein oligomerization // not recorded /// 0051495 // positive regulation of cytoskeleton organization // inferred from direct assay /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded /// 0051602 // response to electrical stimulus // inferred from electronic annotation /// 0051602 // response to electrical stimulus // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded /// 0051899 // membrane depolarization // inferred from direct assay /// 0051899 // membrane depolarization // inferred from electronic annotation /// 0051899 // membrane depolarization // not recorded /// 0051901 // positive regulation of mitochondrial depolarization // inferred from electronic annotation /// 0051901 // positive regulation of mitochondrial depolarization // not recorded /// 0055085 // transmembrane transport // not recorded 0005639 // integral to nuclear inner membrane // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0019717 // synaptosome // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0031594 // neuromuscular junction // not recorded /// 0032059 // bleb // inferred from direct assay /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043195 // terminal button // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0000287 // magnesium ion binding // inferred from direct assay /// 0001530 // lipopolysaccharide binding // inferred from electronic annotation /// 0001530 // lipopolysaccharide binding // not recorded /// 0001614 // purinergic nucleotide receptor activity // inferred from direct assay /// 0001614 // purinergic nucleotide receptor activity // inferred from electronic annotation /// 0001614 // purinergic nucleotide receptor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // not recorded /// 0004931 // extracellular ATP-gated cation channel activity // inferred from direct assay /// 0004931 // extracellular ATP-gated cation channel activity // inferred from electronic annotation /// 0004931 // extracellular ATP-gated cation channel activity // not recorded /// 0004931 // extracellular ATP-gated cation channel activity // traceable author statement /// 0005102 // receptor binding // inferred from physical interaction /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008270 // zinc ion binding // inferred from direct assay /// 0015267 // channel activity // inferred from direct assay /// 0015267 // channel activity // inferred from electronic annotation /// 0015267 // channel activity // not recorded /// 0043539 // protein serine/threonine kinase activator activity // inferred by curator /// 0043539 // protein serine/threonine kinase activator activity // inferred from mutant phenotype 1387719_at NM_013147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013147.1 /DB_XREF=gi:6978662 /GEN=Clcn1 /FEA=FLmRNA /CNT=2 /TID=Rn.10440.1 /TIER=FL /STK=1 /UG=Rn.10440 /LL=25688 /DEF=Rattus norvegicus Chloride channel 1 (skeletal muscle) (Clcn1), mRNA. /PROD=chloride channel 1 (skeletal muscle) /FL=gb:NM_013147.1 NM_013147 chloride channel 1 Clcn1 25688 NM_013147 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from direct assay /// 0006821 // chloride transport // inferred from electronic annotation /// 0006821 // chloride transport // not recorded /// 0019227 // neuronal action potential propagation // not recorded /// 0019227 // neuronal action potential propagation // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0042383 // sarcolemma // not recorded /// 0042383 // sarcolemma // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005247 // voltage-gated chloride channel activity // inferred from direct assay /// 0005247 // voltage-gated chloride channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation 1387720_at NM_134377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134377.1 /DB_XREF=gi:19705482 /GEN=Cstn2 /FEA=FLmRNA /CNT=2 /TID=Rn.81212.1 /TIER=FL /STK=1 /UG=Rn.81212 /DEF=Rattus norvegicus calsyntenin 2 (Cstn2), mRNA. /PROD=calsyntenin 2 /FL=gb:NM_134377.1 NM_134377 calsyntenin 2 Clstn2 171394 NM_134377 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007268 // synaptic transmission // non-traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0045211 // postsynaptic membrane // not recorded 0005509 // calcium ion binding // inferred from electronic annotation 1387721_at NM_017155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017155.1 /DB_XREF=gi:8392860 /GEN=Adora1 /FEA=FLmRNA /CNT=2 /TID=Rn.32078.1 /TIER=FL /STK=1 /UG=Rn.32078 /LL=29290 /DEF=Rattus norvegicus Adenosine A1 receptor (Adora1), mRNA. /PROD=Adenosine A1 receptor /FL=gb:NM_017155.1 NM_017155 adenosine A1 receptor Adora1 29290 NM_017155 0000186 // activation of MAPKK activity // inferred from direct assay /// 0001659 // temperature homeostasis // inferred from mutant phenotype /// 0002087 // regulation of respiratory gaseous exchange by neurological system process // inferred from mutant phenotype /// 0002686 // negative regulation of leukocyte migration // inferred from electronic annotation /// 0002686 // negative regulation of leukocyte migration // not recorded /// 0002793 // positive regulation of peptide secretion // inferred from mutant phenotype /// 0003093 // regulation of glomerular filtration // inferred from electronic annotation /// 0003093 // regulation of glomerular filtration // not recorded /// 0006612 // protein targeting to membrane // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0014050 // negative regulation of glutamate secretion // inferred from direct assay /// 0016042 // lipid catabolic process // inferred from mutant phenotype /// 0030147 // natriuresis // inferred from mutant phenotype /// 0032229 // negative regulation of synaptic transmission, GABAergic // inferred from direct assay /// 0032229 // negative regulation of synaptic transmission, GABAergic // inferred from mutant phenotype /// 0032244 // positive regulation of nucleoside transport // inferred from direct assay /// 0032900 // negative regulation of neurotrophin production // inferred from mutant phenotype /// 0035307 // positive regulation of protein dephosphorylation // inferred from direct assay /// 0042312 // regulation of vasodilation // inferred from direct assay /// 0042321 // negative regulation of circadian sleep/wake cycle, sleep // inferred from direct assay /// 0042323 // negative regulation of circadian sleep/wake cycle, non-REM sleep // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0043268 // positive regulation of potassium ion transport // inferred from direct assay /// 0045741 // positive regulation of epidermal growth factor receptor activity // inferred from mutant phenotype /// 0045777 // positive regulation of blood pressure // inferred from direct assay /// 0045822 // negative regulation of heart contraction // inferred from mutant phenotype /// 0045908 // negative regulation of vasodilation // inferred from direct assay /// 0046888 // negative regulation of hormone secretion // inferred from mutant phenotype /// 0048167 // regulation of synaptic plasticity // inferred from mutant phenotype /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // not recorded /// 0050890 // cognition // inferred from mutant phenotype /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // inferred from mutant phenotype /// 0050995 // negative regulation of lipid catabolic process // inferred from direct assay /// 0051967 // negative regulation of synaptic transmission, glutamatergic // inferred from direct assay /// 0055117 // regulation of cardiac muscle contraction // inferred from mutant phenotype /// 0055118 // negative regulation of cardiac muscle contraction // inferred from mutant phenotype /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from mutant phenotype /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060087 // relaxation of vascular smooth muscle // inferred from mutant phenotype /// 0070256 // negative regulation of mucus secretion // inferred from electronic annotation /// 0070256 // negative regulation of mucus secretion // not recorded 0005783 // endoplasmic reticulum // inferred from mutant phenotype /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030673 // axolemma // inferred from direct assay /// 0032279 // asymmetric synapse // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0044297 // cell body // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0048786 // presynaptic active zone // inferred from direct assay 0001609 // adenosine receptor activity, G-protein coupled // inferred from direct assay /// 0001609 // adenosine receptor activity, G-protein coupled // traceable author statement /// 0001609 // adenosine receptor activity, G-protein coupled // inferred from electronic annotation /// 0001664 // G-protein-coupled receptor binding // inferred from physical interaction /// 0001883 // purine nucleoside binding // inferred from physical interaction /// 0004629 // phospholipase C activity // inferred from mutant phenotype /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0031683 // G-protein beta/gamma-subunit binding // inferred from direct assay /// 0032795 // heterotrimeric G-protein binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1387722_at NM_017156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017156.1 /DB_XREF=gi:8393229 /GEN=Cyp2b15 /FEA=FLmRNA /CNT=2 /TID=Rn.2287.1 /TIER=FL /STK=1 /UG=Rn.2287 /LL=29295 /DEF=Rattus norvegicus cytochrome P450, 2b19 (Cyp2b15), mRNA. /PROD=cytochrome P450, 2b19 /FL=gb:NM_017156.1 NM_017156 cytochrome P450, family 2, subfamily b, polypeptide 12 Cyp2b12 29295 NM_017156 0019373 // epoxygenase P450 pathway // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008392 // arachidonic acid epoxygenase activity // inferred from direct assay /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1387723_at NM_017310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017310.1 /DB_XREF=gi:8394254 /GEN=Sema3a /FEA=FLmRNA /CNT=2 /TID=Rn.44410.1 /TIER=FL /STK=1 /UG=Rn.44410 /LL=29751 /DEF=Rattus norvegicus sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A (Sema3a), mRNA. /PROD=sema domain, immunoglobulin domain (Ig), shortbasic domain, secreted, (semaphorin) 3A /FL=gb:NM_017310.1 NM_017310 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A Sema3a 29751 NM_017310 0002027 // regulation of heart rate // inferred from electronic annotation /// 0002027 // regulation of heart rate // not recorded /// 0006915 // apoptosis // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007413 // axonal fasciculation // inferred from electronic annotation /// 0007413 // axonal fasciculation // not recorded /// 0010633 // negative regulation of epithelial cell migration // inferred from electronic annotation /// 0010633 // negative regulation of epithelial cell migration // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030517 // negative regulation of axon extension // inferred from direct assay /// 0030517 // negative regulation of axon extension // not recorded /// 0030517 // negative regulation of axon extension // inferred from electronic annotation /// 0048841 // regulation of axon extension involved in axon guidance // not recorded /// 0048841 // regulation of axon extension involved in axon guidance // inferred from electronic annotation /// 0048843 // negative regulation of axon extension involved in axon guidance // inferred from electronic annotation /// 0048843 // negative regulation of axon extension involved in axon guidance // not recorded /// 0050919 // negative chemotaxis // not recorded /// 0050919 // negative chemotaxis // inferred from electronic annotation /// 0060666 // dichotomous subdivision of terminal units involved in salivary gland branching // inferred from electronic annotation /// 0060666 // dichotomous subdivision of terminal units involved in salivary gland branching // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030424 // axon // inferred from mutant phenotype /// 0030425 // dendrite // inferred from mutant phenotype 0004872 // receptor activity // inferred from electronic annotation /// 0045499 // chemorepellent activity // inferred from electronic annotation /// 0045499 // chemorepellent activity // not recorded 1387724_at NM_012616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012616.1 /DB_XREF=gi:6981303 /GEN=Omp /FEA=FLmRNA /CNT=2 /TID=Rn.9720.1 /TIER=FL /STK=1 /UG=Rn.9720 /LL=24612 /DEF=Rattus norvegicus Olfactory marker protein (Omp), mRNA. /PROD=olfactory marker protein /FL=gb:NM_012616.1 NM_012616 olfactory marker protein Omp 24612 NM_012616 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007608 // sensory perception of smell // not recorded /// 0007608 // sensory perception of smell // non-traceable author statement /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // non-traceable author statement /// 0030424 // axon // not recorded /// 0043025 // neuronal cell body // not recorded 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // non-traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay 1387725_at NM_022220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022220.1 /DB_XREF=gi:11560005 /GEN=Gulo /FEA=FLmRNA /CNT=2 /TID=Rn.44472.1 /TIER=FL /STK=1 /UG=Rn.44472 /LL=60671 /DEF=Rattus norvegicus L-gulono-gamma-lactone oxidase (Gulo), mRNA. /PROD=L-gulono-gamma-lactone oxidase /FL=gb:NM_022220.1 NM_022220 gulonolactone (L-) oxidase Gulo 60671 NM_022220 0009058 // biosynthetic process // inferred from electronic annotation /// 0019853 // L-ascorbic acid biosynthetic process // not recorded /// 0019853 // L-ascorbic acid biosynthetic process // traceable author statement /// 0019853 // L-ascorbic acid biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // traceable author statement /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003885 // D-arabinono-1,4-lactone oxidase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016899 // oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor // inferred from electronic annotation /// 0050105 // L-gulonolactone oxidase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1387726_at NM_023963 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023963.1 /DB_XREF=gi:13027411 /GEN=Cdx2 /FEA=FLmRNA /CNT=2 /TID=Rn.64495.1 /TIER=FL /STK=1 /UG=Rn.64495 /LL=66019 /DEF=Rattus norvegicus CDX2 protein (Cdx2), mRNA. /PROD=CDX2 protein /FL=gb:NM_023963.1 NM_023963 caudal type homeo box 2 Cdx2 66019 NM_023963 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001824 // blastocyst development // not recorded /// 0001824 // blastocyst development // inferred from electronic annotation /// 0001829 // trophectodermal cell differentiation // not recorded /// 0001829 // trophectodermal cell differentiation // inferred from electronic annotation /// 0001890 // placenta development // not recorded /// 0001890 // placenta development // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007389 // pattern specification process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0035019 // somatic stem cell maintenance // not recorded /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // not recorded /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from direct assay /// 0060711 // labyrinthine layer development // not recorded /// 0060711 // labyrinthine layer development // inferred from electronic annotation 0000794 // condensed nuclear chromosome // not recorded /// 0000794 // condensed nuclear chromosome // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // not recorded /// 0017053 // transcriptional repressor complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1387727_at NM_019145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019145.1 /DB_XREF=gi:9506488 /GEN=Chrng /FEA=FLmRNA /CNT=2 /TID=Rn.44634.1 /TIER=FL /STK=1 /UG=Rn.44634 /LL=25753 /DEF=Rattus norvegicus Cholinergic receptor, nicotinic, gamma polypeptide (Chrng), mRNA. /PROD=cholinergic receptor, nicotinic, gammapolypeptide /FL=gb:NM_019145.1 NM_019145 cholinergic receptor, nicotinic, gamma Chrng 25753 NM_019145 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from mutant phenotype /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // not recorded /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0045211 // postsynaptic membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from direct assay /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // not recorded /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015276 // ligand-gated ion channel activity // inferred from direct assay 1387728_at NM_057193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057193.1 /DB_XREF=gi:17105371 /GEN=Il10ra /FEA=FLmRNA /CNT=2 /TID=Rn.64632.1 /TIER=FL /STK=1 /UG=Rn.64632 /LL=117539 /DEF=Rattus norvegicus interleukin 10 receptor, alpha (Il10ra), mRNA. /PROD=interleukin 10 receptor, alpha /FL=gb:NM_057193.1 NM_057193 interleukin 10 receptor, alpha Il10ra 117539 NM_057193 0007596 // blood coagulation // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387729_at NM_019235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019235.1 /DB_XREF=gi:9506722 /GEN=Ggtla1 /FEA=FLmRNA /CNT=2 /TID=Rn.44367.1 /TIER=FL /STK=1 /UG=Rn.44367 /LL=29566 /DEF=Rattus norvegicus gamma-glutamyltransferase-like activity 1 (Ggtla1), mRNA. /PROD=gamma-glutamyltransferase-like activity 1 /FL=gb:NM_019235.1 NM_019235 gamma-glutamyltransferase 5 Ggt5 29566 NM_019235 0006750 // glutathione biosynthetic process // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0006979 // response to oxidative stress // traceable author statement /// 0008152 // metabolic process // not recorded /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0019370 // leukotriene biosynthetic process // inferred from electronic annotation /// 0019370 // leukotriene biosynthetic process // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003840 // gamma-glutamyltransferase activity // inferred from electronic annotation /// 0003840 // gamma-glutamyltransferase activity // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387730_at NM_031141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031141.1 /DB_XREF=gi:13592126 /GEN=Pax8 /FEA=FLmRNA /CNT=2 /TID=Rn.10392.1 /TIER=FL /STK=1 /UG=Rn.10392 /LL=81819 /DEF=Rattus norvegicus Pax-8 protein (Pax8), mRNA. /PROD=Pax-8 protein /FL=gb:NM_031141.1 NM_031141 paired box 8 Pax8 81819 NM_031141 0001656 // metanephros development // inferred from electronic annotation /// 0001656 // metanephros development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030878 // thyroid gland development // inferred from electronic annotation /// 0030878 // thyroid gland development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from mutant phenotype /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay 1387731_at NM_024376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024376.1 /DB_XREF=gi:13242278 /GEN=Gja3 /FEA=FLmRNA /CNT=2 /TID=Rn.10345.1 /TIER=FL /STK=1 /UG=Rn.10345 /LL=79217 /DEF=Rattus norvegicus connexin 46 (Gja3), mRNA. /PROD=connexin 46 /FL=gb:NM_024376.1 NM_024376 gap junction protein, alpha 3 Gja3 79217 NM_024376 0007154 // cell communication // inferred from electronic annotation /// 0009268 // response to pH // inferred from direct assay /// 0042542 // response to hydrogen peroxide // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0005921 // gap junction // inferred from direct assay /// 0005921 // gap junction // not recorded /// 0005921 // gap junction // inferred from electronic annotation /// 0005922 // connexon complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay 0005243 // gap junction channel activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from direct assay 1387732_at NM_053499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053499.1 /DB_XREF=gi:16758257 /GEN=Mterf /FEA=FLmRNA /CNT=2 /TID=Rn.64629.1 /TIER=FL /STK=1 /UG=Rn.64629 /LL=85261 /DEF=Rattus norvegicus transcription termination factor, mitochondrial (Mterf), mRNA. /PROD=transcription termination factor, mitochondrial /FL=gb:NM_053499.1 NM_053499 mitochondrial transcription termination factor Mterf 85261 NM_053499 0006350 // transcription // inferred from electronic annotation /// 0006353 // transcription termination // inferred from electronic annotation /// 0006393 // termination of mitochondrial transcription // inferred from sequence or structural similarity /// 0032392 // DNA geometric change // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0042645 // mitochondrial nucleoid // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from sequence or structural similarity /// 0003715 // transcription termination factor activity // inferred from sequence or structural similarity 1387733_at NM_017140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017140.1 /DB_XREF=gi:8393270 /GEN=Drd3 /FEA=FLmRNA /CNT=2 /TID=Rn.10356.1 /TIER=FL /STK=1 /UG=Rn.10356 /LL=29238 /DEF=Rattus norvegicus dopamine receptor 3 (Drd3), mRNA. /PROD=dopamine receptor 3 /FL=gb:NM_017140.1 NM_017140 dopamine receptor D3 Drd3 29238 NM_017140 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001963 // synaptic transmission, dopaminergic // inferred from mutant phenotype /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0001975 // response to amphetamine // not recorded /// 0002016 // regulation of blood volume by renin-angiotensin // inferred from electronic annotation /// 0002016 // regulation of blood volume by renin-angiotensin // not recorded /// 0002031 // G-protein coupled receptor internalization // inferred from direct assay /// 0002031 // G-protein coupled receptor internalization // not recorded /// 0002031 // G-protein coupled receptor internalization // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007191 // activation of adenylate cyclase activity by dopamine receptor signaling pathway // inferred from electronic annotation /// 0007191 // activation of adenylate cyclase activity by dopamine receptor signaling pathway // not recorded /// 0007194 // negative regulation of adenylate cyclase activity // inferred from direct assay /// 0007194 // negative regulation of adenylate cyclase activity // not recorded /// 0007194 // negative regulation of adenylate cyclase activity // inferred from electronic annotation /// 0007195 // inhibition of adenylate cyclase activity by dopamine receptor signaling pathway // inferred from electronic annotation /// 0007195 // inhibition of adenylate cyclase activity by dopamine receptor signaling pathway // not recorded /// 0007212 // dopamine receptor signaling pathway // inferred from mutant phenotype /// 0007212 // dopamine receptor signaling pathway // traceable author statement /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008542 // visual learning // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0014059 // regulation of dopamine secretion // inferred from electronic annotation /// 0014059 // regulation of dopamine secretion // not recorded /// 0019216 // regulation of lipid metabolic process // inferred from electronic annotation /// 0019216 // regulation of lipid metabolic process // not recorded /// 0030814 // regulation of cAMP metabolic process // inferred from direct assay /// 0030814 // regulation of cAMP metabolic process // not recorded /// 0030814 // regulation of cAMP metabolic process // inferred from electronic annotation /// 0032416 // negative regulation of sodium:hydrogen antiporter activity // inferred from mutant phenotype /// 0032922 // circadian regulation of gene expression // inferred from electronic annotation /// 0032922 // circadian regulation of gene expression // not recorded /// 0034776 // response to histamine // inferred from electronic annotation /// 0034776 // response to histamine // not recorded /// 0040012 // regulation of locomotion // inferred from mutant phenotype /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0042220 // response to cocaine // not recorded /// 0042220 // response to cocaine // inferred from electronic annotation /// 0042493 // response to drug // inferred from direct assay /// 0042493 // response to drug // traceable author statement /// 0043278 // response to morphine // inferred from electronic annotation /// 0043278 // response to morphine // not recorded /// 0045187 // regulation of circadian sleep/wake cycle, sleep // inferred from mutant phenotype /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045471 // response to ethanol // not recorded /// 0045776 // negative regulation of blood pressure // inferred from electronic annotation /// 0045776 // negative regulation of blood pressure // not recorded /// 0045840 // positive regulation of mitosis // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046717 // acid secretion // inferred from direct assay /// 0048148 // behavioral response to cocaine // inferred from electronic annotation /// 0048148 // behavioral response to cocaine // not recorded /// 0048715 // negative regulation of oligodendrocyte differentiation // inferred from electronic annotation /// 0048715 // negative regulation of oligodendrocyte differentiation // not recorded /// 0050482 // arachidonic acid secretion // inferred from electronic annotation /// 0050482 // arachidonic acid secretion // not recorded /// 0050709 // negative regulation of protein secretion // inferred from electronic annotation /// 0050709 // negative regulation of protein secretion // not recorded /// 0050883 // musculoskeletal movement, spinal reflex action // inferred from electronic annotation /// 0050883 // musculoskeletal movement, spinal reflex action // not recorded /// 0051898 // negative regulation of protein kinase B signaling cascade // inferred from electronic annotation /// 0051898 // negative regulation of protein kinase B signaling cascade // not recorded /// 0060134 // prepulse inhibition // inferred from electronic annotation /// 0060134 // prepulse inhibition // not recorded /// 0060160 // negative regulation of dopamine receptor signaling pathway // inferred from electronic annotation /// 0060160 // negative regulation of dopamine receptor signaling pathway // not recorded /// 0060161 // positive regulation of dopamine receptor signaling pathway // inferred from electronic annotation /// 0060161 // positive regulation of dopamine receptor signaling pathway // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from direct assay /// 0042995 // cell projection // inferred from direct assay /// 0045177 // apical part of cell // inferred from direct assay 0001591 // dopamine receptor activity, coupled via Gi/Go // inferred from direct assay /// 0001592 // dopamine D3 receptor activity // inferred from electronic annotation /// 0001592 // dopamine D3 receptor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004952 // dopamine receptor activity // inferred from mutant phenotype /// 0004952 // dopamine receptor activity // traceable author statement /// 0004952 // dopamine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0008144 // drug binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0035240 // dopamine binding // inferred from mutant phenotype 1387734_at NM_021670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021670.1 /DB_XREF=gi:11067388 /GEN=Bmp15 /FEA=FLmRNA /CNT=2 /TID=Rn.42867.1 /TIER=FL /STK=1 /UG=Rn.42867 /LL=59302 /DEF=Rattus norvegicus bone morphogenetic protein 15 (Bmp15), mRNA. /PROD=bone morphogenetic protein 15 /FL=gb:NM_021670.1 NM_021670 bone morphogenetic protein 15 Bmp15 59302 NM_021670 0001541 // ovarian follicle development // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from direct assay /// 0060016 // granulosa cell development // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0008083 // growth factor activity // inferred from electronic annotation 1387735_at NM_022221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022221.1 /DB_XREF=gi:11560007 /GEN=LOC63849 /FEA=FLmRNA /CNT=2 /TID=Rn.44474.1 /TIER=FL /STK=1 /UG=Rn.44474 /LL=63849 /DEF=Rattus norvegicus neutrophil collagenease (LOC63849), mRNA. /PROD=neutrophil collagenease /FL=gb:NM_022221.1 NM_022221 matrix metallopeptidase 8 Mmp8 63849 NM_022221 0001503 // ossification // inferred from expression pattern /// 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // inferred from sequence or structural similarity /// 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0030574 // collagen catabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from sequence or structural similarity /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from mutant phenotype /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from direct assay /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from mutant phenotype /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387736_at NM_080773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080773.1 /DB_XREF=gi:18249940 /GEN=Chrm1 /FEA=FLmRNA /CNT=2 /TID=Rn.44498.1 /TIER=FL /STK=1 /UG=Rn.44498 /LL=25229 /DEF=Rattus norvegicus Cholinergic receptor, muscarin 1 (Chrm1), mRNA. /PROD=cholinergic receptor, muscarin 1 /FL=gb:NM_080773.1 NM_080773 cholinergic receptor, muscarinic 1 Chrm1 25229 NM_080773 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007213 // muscarinic acetylcholine receptor signaling pathway // inferred from direct assay /// 0007274 // neuromuscular synaptic transmission // inferred from direct assay /// 0040012 // regulation of locomotion // inferred from electronic annotation /// 0040012 // regulation of locomotion // not recorded 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0032279 // asymmetric synapse // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay /// 0045202 // synapse // traceable author statement /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004981 // muscarinic acetylcholine receptor activity // inferred from direct assay /// 0004981 // muscarinic acetylcholine receptor activity // inferred from mutant phenotype /// 0004981 // muscarinic acetylcholine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008144 // drug binding // inferred from direct assay 1387737_at NM_134351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134351.1 /DB_XREF=gi:19705456 /GEN=Mat2a /FEA=FLmRNA /CNT=2 /TID=Rn.82710.1 /TIER=FL /STK=1 /UG=Rn.82710 /LL=171347 /DEF=Rattus norvegicus methionine adenosyltransferase II, alpha (Mat2a), mRNA. /PROD=methionine adenosyltransferase II, alpha /FL=gb:NM_134351.1 NM_134351 methionine adenosyltransferase II, alpha Mat2a 171347 NM_134351 0006556 // S-adenosylmethionine biosynthetic process // not recorded /// 0006556 // S-adenosylmethionine biosynthetic process // traceable author statement /// 0006556 // S-adenosylmethionine biosynthetic process // inferred from electronic annotation /// 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from direct assay /// 0009416 // response to light stimulus // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from direct assay /// 0042493 // response to drug // inferred from direct assay /// 0051591 // response to cAMP // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004478 // methionine adenosyltransferase activity // not recorded /// 0004478 // methionine adenosyltransferase activity // traceable author statement /// 0004478 // methionine adenosyltransferase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387738_at NM_021837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021837.1 /DB_XREF=gi:11177867 /GEN=Mycs /FEA=FLmRNA /CNT=2 /TID=Rn.44294.1 /TIER=FL /STK=1 /UG=Rn.44294 /LL=24581 /DEF=Rattus norvegicus Myc-like oncogene, s-myc protein (Mycs), mRNA. /PROD=myc-like oncogene, s-myc protein /FL=gb:NM_021837.1 NM_021837 myc-like oncogene, s-myc protein Mycs 24581 NM_021837 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1387739_at NM_031539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031539.1 /DB_XREF=gi:13928727 /GEN=Cd8b1 /FEA=FLmRNA /CNT=2 /TID=Rn.10330.1 /TIER=FL /STK=1 /UG=Rn.10330 /LL=24931 /DEF=Rattus norvegicus CD8 antigen, beta-chain (Cd8b1), mRNA. /PROD=CD8 antigen, beta-chain /FL=gb:NM_031539.1 NM_031539 CD8b molecule Cd8b 24931 NM_031539 0050690 // regulation of defense response to virus by virus // not recorded 0005769 // early endosome // not recorded /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387740_at NM_053487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053487.1 /DB_XREF=gi:16758245 /GEN=Pex11a /FEA=FLmRNA /CNT=2 /TID=Rn.14519.1 /TIER=FL /STK=1 /UG=Rn.14519 /LL=85249 /DEF=Rattus norvegicus peroxisomal membrane protein Pmp26p (Peroxin-11) (Pex11a), mRNA. /PROD=peroxisomal membrane protein Pmp26p(Peroxin-11) /FL=gb:NM_053487.1 NM_053487 peroxisomal biogenesis factor 11 alpha Pex11a 85249 NM_053487 0007031 // peroxisome organization // not recorded /// 0007031 // peroxisome organization // inferred from sequence or structural similarity /// 0007031 // peroxisome organization // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from sequence or structural similarity /// 0007165 // signal transduction // inferred from electronic annotation /// 0016557 // peroxisome membrane biogenesis // inferred from direct assay /// 0016559 // peroxisome fission // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded 0005777 // peroxisome // inferred from electronic annotation /// 0005777 // peroxisome // not recorded /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0005779 // integral to peroxisomal membrane // not recorded /// 0005779 // integral to peroxisomal membrane // inferred from sequence or structural similarity /// 0005779 // integral to peroxisomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1387741_at NM_022225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022225.1 /DB_XREF=gi:11560015 /GEN=Htr1b /FEA=FLmRNA /CNT=2 /TID=Rn.44487.1 /TIER=FL /STK=1 /UG=Rn.44487 /LL=25075 /DEF=Rattus norvegicus Serotonin (5-hydroxytryptamine (5HT)) receptor, type 1B (Htr1b), mRNA. /PROD=5-hydroxytryptamineno. (serotonin) receptor 1B /FL=gb:NM_022225.1 NM_022225 5-hydroxytryptamine (serotonin) receptor 1B Htr1b 25075 NM_022225 0002031 // G-protein coupled receptor internalization // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // not recorded /// 0007268 // synaptic transmission // inferred from direct assay /// 0007631 // feeding behavior // inferred from mutant phenotype /// 0009636 // response to toxin // not recorded /// 0014059 // regulation of dopamine secretion // inferred from mutant phenotype /// 0030818 // negative regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0030818 // negative regulation of cAMP biosynthetic process // not recorded /// 0032229 // negative regulation of synaptic transmission, GABAergic // inferred from mutant phenotype /// 0042220 // response to cocaine // inferred from direct assay /// 0042493 // response to drug // not recorded /// 0042756 // drinking behavior // inferred from mutant phenotype /// 0045471 // response to ethanol // inferred from mutant phenotype /// 0051385 // response to mineralocorticoid stimulus // inferred from expression pattern /// 0051967 // negative regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype /// 0071502 // cellular response to temperature stimulus // not recorded 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // inferred from direct assay /// 0004993 // serotonin receptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008144 // drug binding // inferred from direct assay /// 0008144 // drug binding // not recorded /// 0051378 // serotonin binding // inferred from direct assay /// 0051378 // serotonin binding // not recorded 1387742_at NM_021866 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021866.1 /DB_XREF=gi:11177913 /GEN=Ccr2 /FEA=FLmRNA /CNT=2 /TID=Rn.44347.1 /TIER=FL /STK=1 /UG=Rn.44347 /LL=60463 /DEF=Rattus norvegicus chemokine receptor CCR2 gene (Ccr2), mRNA. /PROD=chemokine receptor CCR2 gene /FL=gb:NM_021866.1 NM_021866 chemokine (C-C motif) receptor 2 Ccr2 60463 NM_021866 0001666 // response to hypoxia // inferred from expression pattern /// 0001974 // blood vessel remodeling // inferred from expression pattern /// 0002437 // inflammatory response to antigenic stimulus // inferred from expression pattern /// 0006874 // cellular calcium ion homeostasis // inferred from direct assay /// 0006954 // inflammatory response // inferred from direct assay /// 0006954 // inflammatory response // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0006959 // humoral immune response // inferred from electronic annotation /// 0006959 // humoral immune response // not recorded /// 0006968 // cellular defense response // inferred from electronic annotation /// 0006968 // cellular defense response // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0010574 // regulation of vascular endothelial growth factor production // inferred from electronic annotation /// 0010574 // regulation of vascular endothelial growth factor production // not recorded /// 0010759 // positive regulation of macrophage chemotaxis // inferred from electronic annotation /// 0010759 // positive regulation of macrophage chemotaxis // not recorded /// 0016525 // negative regulation of angiogenesis // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from mutant phenotype /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0019233 // sensory perception of pain // not recorded /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0030334 // regulation of cell migration // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from direct assay /// 0070098 // chemokine-mediated signaling pathway // inferred from mutant phenotype /// 0090265 // positive regulation of immune complex clearance by monocytes and macrophages // inferred from electronic annotation /// 0090265 // positive regulation of immune complex clearance by monocytes and macrophages // not recorded 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004950 // chemokine receptor activity // inferred from expression pattern /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016493 // C-C chemokine receptor activity // inferred from mutant phenotype /// 0016493 // C-C chemokine receptor activity // not recorded /// 0016493 // C-C chemokine receptor activity // inferred from electronic annotation /// 0019955 // cytokine binding // not recorded /// 0019955 // cytokine binding // inferred from electronic annotation /// 0019956 // chemokine binding // inferred from mutant phenotype /// 0019957 // C-C chemokine binding // inferred from expression pattern /// 0019957 // C-C chemokine binding // inferred from mutant phenotype /// 0031727 // CCR2 chemokine receptor binding // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay 1387743_at NM_022216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022216.1 /DB_XREF=gi:11559999 /GEN=Gpcr5-1 /FEA=FLmRNA /CNT=2 /TID=Rn.44454.1 /TIER=FL /STK=1 /UG=Rn.44454 /LL=60667 /DEF=Rattus norvegicus G protein-coupled receptor 5-1 (Gpcr5-1), mRNA. /PROD=G protein-coupled receptor 5-1 /FL=gb:NM_022216.1 NM_022216 G protein-coupled receptor 20 Gpr20 60667 NM_022216 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005887 // integral to plasma membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // not recorded 1387744_at NM_053750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053750.1 /DB_XREF=gi:16758581 /GEN=Nppc /FEA=FLmRNA /CNT=2 /TID=Rn.10637.1 /TIER=FL /STK=1 /UG=Rn.10637 /LL=114593 /DEF=Rattus norvegicus natriuretic peptide precursor C (Nppc), mRNA. /PROD=natriuretic peptide precursor C /FL=gb:NM_053750.1 NM_053750 natriuretic peptide precursor C Nppc 114593 NM_053750 0001503 // ossification // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from expression pattern /// 0003418 // growth plate cartilage chondrocyte differentiation // not recorded /// 0003418 // growth plate cartilage chondrocyte differentiation // inferred from sequence or structural similarity /// 0003419 // growth plate cartilage chondrocyte proliferation // not recorded /// 0003419 // growth plate cartilage chondrocyte proliferation // inferred from sequence or structural similarity /// 0006182 // cGMP biosynthetic process // inferred from direct assay /// 0006182 // cGMP biosynthetic process // not recorded /// 0006182 // cGMP biosynthetic process // inferred from electronic annotation /// 0007168 // receptor guanylyl cyclase signaling pathway // not recorded /// 0007168 // receptor guanylyl cyclase signaling pathway // inferred from sequence or structural similarity /// 0007168 // receptor guanylyl cyclase signaling pathway // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0030828 // positive regulation of cGMP biosynthetic process // inferred from direct assay /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0045669 // positive regulation of osteoblast differentiation // inferred from direct assay /// 0045909 // positive regulation of vasodilation // inferred from direct assay /// 0048513 // organ development // inferred from electronic annotation /// 0048513 // organ development // not recorded /// 0048660 // regulation of smooth muscle cell proliferation // inferred from expression pattern /// 0050880 // regulation of blood vessel size // inferred from electronic annotation /// 0051053 // negative regulation of DNA metabolic process // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005179 // hormone activity // inferred from direct assay /// 0005179 // hormone activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from mutant phenotype /// 0051428 // peptide hormone receptor binding // inferred from direct assay 1387745_at NM_023953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023953.1 /DB_XREF=gi:13027397 /GEN=Mox2r /FEA=FLmRNA /CNT=2 /TID=Rn.64506.1 /TIER=FL /STK=1 /UG=Rn.64506 /LL=64357 /DEF=Rattus norvegicus antigen identified by monoclonal antibody MRC OX-2 receptor (Mox2r), mRNA. /PROD=antigen identified by monoclonal antibody MRCOX-2 receptor /FL=gb:NM_023953.1 NM_023953 CD200 receptor 1 Cd200r1 64357 NM_023953 0007165 // signal transduction // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // not recorded /// 0005515 // protein binding // not recorded 1387746_at NM_020106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020106.1 /DB_XREF=gi:9910253 /GEN=Gust43 /FEA=FLmRNA /CNT=2 /TID=Rn.48673.1 /TIER=FL /STK=1 /UG=Rn.48673 /LL=56821 /DEF=Rattus norvegicus gustatory receptor 43 (Gust43), mRNA. /PROD=gustatory receptor 43 /FL=gb:NM_020106.1 NM_020106 olfactory receptor 414 Olr414 56821 NM_020106 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from reviewed computational analysis /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0050911 // detection of chemical stimulus involved in sensory perception of smell // inferred from reviewed computational analysis 0016021 // integral to membrane // inferred from reviewed computational analysis /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from sequence or structural similarity /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from reviewed computational analysis /// 0004984 // olfactory receptor activity // inferred from electronic annotation /// 0008527 // taste receptor activity // non-traceable author statement 1387747_at NM_019240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019240.1 /DB_XREF=gi:9506730 /GEN=Gjb3 /FEA=FLmRNA /CNT=2 /TID=Rn.44458.1 /TIER=FL /STK=1 /UG=Rn.44458 /LL=29585 /DEF=Rattus norvegicus gap junction membrane channel protein beta 3 (Gjb3), mRNA. /PROD=gap junction membrane channel protein beta 3 /FL=gb:NM_019240.1 NM_019240 gap junction protein, beta 3 Gjb3 29585 NM_019240 0001701 // in utero embryonic development // inferred from expression pattern /// 0001890 // placenta development // inferred from electronic annotation /// 0001890 // placenta development // not recorded /// 0007154 // cell communication // inferred from electronic annotation /// 0007605 // sensory perception of sound // inferred from mutant phenotype /// 0043588 // skin development // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0005921 // gap junction // not recorded /// 0005921 // gap junction // inferred from electronic annotation /// 0005922 // connexon complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 1387748_at NM_013076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013076.1 /DB_XREF=gi:6981147 /GEN=Lep /FEA=FLmRNA /CNT=2 /TID=Rn.44444.1 /TIER=FL /STK=1 /UG=Rn.44444 /LL=25608 /DEF=Rattus norvegicus Obesity (murine homolog, leptin) (Lep), mRNA. /PROD=obesity (murine homolog, leptin) /FL=gb:NM_013076.1 gb:D49653.1 NM_013076 leptin Lep 25608 NM_013076 0001542 // ovulation from ovarian follicle // inferred from direct assay /// 0002021 // response to dietary excess // inferred from electronic annotation /// 0002021 // response to dietary excess // not recorded /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006111 // regulation of gluconeogenesis // inferred from electronic annotation /// 0006111 // regulation of gluconeogenesis // not recorded /// 0006112 // energy reserve metabolic process // inferred from direct assay /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007259 // JAK-STAT cascade // traceable author statement /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0008206 // bile acid metabolic process // inferred from electronic annotation /// 0008206 // bile acid metabolic process // not recorded /// 0008343 // adult feeding behavior // not recorded /// 0008343 // adult feeding behavior // inferred from sequence or structural similarity /// 0008343 // adult feeding behavior // inferred from electronic annotation /// 0009062 // fatty acid catabolic process // inferred from direct assay /// 0009892 // negative regulation of metabolic process // inferred from direct assay /// 0019222 // regulation of metabolic process // not recorded /// 0019222 // regulation of metabolic process // inferred from electronic annotation /// 0019933 // cAMP-mediated signaling // traceable author statement /// 0021954 // central nervous system neuron development // inferred from electronic annotation /// 0021954 // central nervous system neuron development // not recorded /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0023034 // intracellular signaling pathway // traceable author statement /// 0030073 // insulin secretion // not recorded /// 0030073 // insulin secretion // inferred from electronic annotation /// 0030300 // regulation of intestinal cholesterol absorption // inferred from electronic annotation /// 0030300 // regulation of intestinal cholesterol absorption // not recorded /// 0032099 // negative regulation of appetite // not recorded /// 0032099 // negative regulation of appetite // inferred from sequence or structural similarity /// 0032099 // negative regulation of appetite // inferred from electronic annotation /// 0032868 // response to insulin stimulus // inferred from electronic annotation /// 0032868 // response to insulin stimulus // not recorded /// 0033210 // leptin-mediated signaling pathway // inferred from direct assay /// 0042445 // hormone metabolic process // inferred from electronic annotation /// 0042445 // hormone metabolic process // not recorded /// 0042755 // eating behavior // inferred from electronic annotation /// 0042755 // eating behavior // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from direct assay /// 0045639 // positive regulation of myeloid cell differentiation // inferred from electronic annotation /// 0045639 // positive regulation of myeloid cell differentiation // not recorded /// 0050796 // regulation of insulin secretion // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // not recorded /// 0050810 // regulation of steroid biosynthetic process // inferred from electronic annotation /// 0050810 // regulation of steroid biosynthetic process // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // traceable author statement /// 0005179 // hormone activity // inferred from direct assay /// 0005179 // hormone activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0051428 // peptide hormone receptor binding // inferred from direct assay 1387749_at NM_133533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133533.1 /DB_XREF=gi:19424187 /GEN=Igb /FEA=FLmRNA /CNT=2 /TID=Rn.44358.1 /TIER=FL /STK=1 /UG=Rn.44358 /LL=171055 /DEF=Rattus norvegicus immunoglobulin-associated beta (Igb), mRNA. /PROD=immunoglobulin-associated beta /FL=gb:NM_133533.1 NM_133533 Cd79b molecule, immunoglobulin-associated beta Cd79b 171055 NM_133533 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0050853 // B cell receptor signaling pathway // inferred from electronic annotation /// 0050853 // B cell receptor signaling pathway // not recorded 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0019815 // B cell receptor complex // inferred from electronic annotation /// 0019815 // B cell receptor complex // not recorded 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387750_at NM_053530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053530.1 /DB_XREF=gi:16758293 /GEN=Twist /FEA=FLmRNA /CNT=2 /TID=Rn.64628.1 /TIER=FL /STK=1 /UG=Rn.64628 /LL=85489 /DEF=Rattus norvegicus twist gene homolog, (Drosophila) (Twist), mRNA. /PROD=twist gene homolog, (Drosophila) /FL=gb:NM_053530.1 NM_053530 twist homolog 1 (Drosophila) Twist1 85489 NM_053530 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0001843 // neural tube closure // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0035115 // embryonic forelimb morphogenesis // not recorded /// 0035115 // embryonic forelimb morphogenesis // inferred from electronic annotation /// 0035137 // hindlimb morphogenesis // not recorded /// 0035137 // hindlimb morphogenesis // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045843 // negative regulation of striated muscle tissue development // not recorded /// 0045843 // negative regulation of striated muscle tissue development // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0060363 // cranial suture morphogenesis // not recorded /// 0060363 // cranial suture morphogenesis // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0070888 // E-box binding // not recorded /// 0070888 // E-box binding // inferred from electronic annotation 1387751_at NM_053751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053751.1 /DB_XREF=gi:16758583 /GEN=Wap /FEA=FLmRNA /CNT=2 /TID=Rn.9978.1 /TIER=FL /STK=1 /UG=Rn.9978 /LL=114596 /DEF=Rattus norvegicus whey acidic protein (Wap), mRNA. /PROD=whey acidic protein /FL=gb:NM_053751.1 NM_053751 whey acidic protein Wap 114596 NM_053751 0005576 // extracellular region // inferred from electronic annotation 0030414 // peptidase inhibitor activity // non-traceable author statement /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1387752_s_at NM_021862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021862.1 /DB_XREF=gi:11177907 /GEN=5Ht-2 /FEA=FLmRNA /CNT=2 /TID=Rn.44322.1 /TIER=FL /STK=1 /UG=Rn.44322 /LL=60459 /DEF=Rattus norvegicus serotonin 5HT-2 receptor gene (5Ht-2), mRNA. /PROD=serotonin 5HT-2 receptor gene /FL=gb:NM_021862.1 NM_021862 5-hydroxytryptamine (serotonin) receptor 2A Htr2a 29595 NM_017254 0001659 // temperature homeostasis // inferred from mutant phenotype /// 0006950 // response to stress // inferred from mutant phenotype /// 0007208 // activation of phospholipase C activity by serotonin receptor signaling pathway // inferred from direct assay /// 0007210 // serotonin receptor signaling pathway // not recorded /// 0007568 // aging // inferred from expression pattern /// 0007613 // memory // inferred from mutant phenotype /// 0008219 // cell death // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0014059 // regulation of dopamine secretion // inferred from mutant phenotype /// 0014065 // phosphoinositide 3-kinase cascade // not recorded /// 0019233 // sensory perception of pain // inferred from mutant phenotype /// 0030431 // sleep // inferred from mutant phenotype /// 0042493 // response to drug // inferred from mutant phenotype /// 0042493 // response to drug // not recorded /// 0043267 // negative regulation of potassium ion transport // inferred from mutant phenotype /// 0043406 // positive regulation of MAP kinase activity // inferred from mutant phenotype /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype /// 0046489 // phosphoinositide biosynthetic process // not recorded /// 0051209 // release of sequestered calcium ion into cytosol // not recorded /// 0051967 // negative regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype /// 0070371 // ERK1 and ERK2 cascade // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay 0004435 // phosphoinositide phospholipase C activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // not recorded /// 0008144 // drug binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction /// 0051378 // serotonin binding // inferred from electronic annotation /// 0051378 // serotonin binding // not recorded 1387753_s_at NM_139084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_139084.1 /DB_XREF=gi:20806116 /GEN=Slipr /FEA=FLmRNA /CNT=1 /TID=Affx.1.18 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus scaffolding protein SLIPR (Slipr), mRNA. /PROD=scaffolding protein SLIPR /FL=gb:NM_139084.1 NM_139084 membrane associated guanylate kinase, WW and PDZ domain containing 3 Magi3 245903 NM_139084 0005634 // nucleus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1387754_at NM_080768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080768.1 /DB_XREF=gi:18158434 /GEN=Tacr2 /FEA=FLmRNA /CNT=1 /TID=Rn.81211.1 /TIER=FL /STK=1 /UG=Rn.81211 /DEF=Rattus norvegicus Tachykinin 2 (substance K) receptor (Tacr2), mRNA. /PROD=tachykinin 2 (substance K) receptor /FL=gb:NM_080768.1 NM_080768 tachykinin receptor 2 Tacr2 25007 NM_080768 0006950 // response to stress // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0035106 // operant conditioning // inferred from mutant phenotype /// 0070474 // positive regulation of uterine smooth muscle contraction // inferred from direct assay 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004995 // tachykinin receptor activity // inferred from electronic annotation /// 0016497 // substance K receptor activity // inferred from direct assay 1387755_s_at NM_138840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_138840.1 /DB_XREF=gi:20301975 /GEN=Ttgn1 /FEA=FLmRNA /CNT=1 /TID=Affx.1.21 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus trans-golgi network protein 1 (Ttgn1), mRNA. /PROD=trans-golgi network protein 1 /FL=gb:NM_138840.1 NM_138840 trans-golgi network protein Tgoln1 192152 NM_138840 0006895 // Golgi to endosome transport // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1387756_s_at NM_133294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133294.1 /DB_XREF=gi:19882214 /GEN=Edag1 /FEA=FLmRNA /CNT=1 /TID=Affx.1.23 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus erythroid differentiation gene 1 (Edag1), mRNA. /PROD=erythroid differentiation gene 1 /FL=gb:NM_133294.1 NM_133294 hemogen Hemgn 113882 NM_133294 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045667 // regulation of osteoblast differentiation // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 1387757_at NM_139189 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_139189.1 /DB_XREF=gi:21070939 /GEN=LOC246046 /FEA=FLmRNA /CNT=1 /TID=Affx.1.26 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus liver regeneration p-53 related protein (LOC246046), mRNA. /PROD=liver regeneration p-53 related protein /FL=gb:NM_139189.1 NM_139189 LMBR1 domain containing 1 Lmbrd1 246046 NM_139189 0006810 // transport // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0031419 // cobalamin binding // inferred from electronic annotation 1387758_at NM_022680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022680.1 /DB_XREF=gi:12083622 /GEN=Alpi2 /FEA=FLmRNA /CNT=1 /TID=Rn.48775.1 /TIER=FL /STK=1 /UG=Rn.48775 /LL=64621 /DEF=Rattus norvegicus intestinal alkaline phosphatase-II (IAP-II) gene (Alpi2), mRNA. /PROD=intestinal alkaline phosphatase-II (IAP-II)gene /FL=gb:NM_022680.1 NM_022680 alkaline phosphatase 3, intestine, not Mn requiring Akp3 64621 NM_022680 0006793 // phosphorus metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0021915 // neural tube development // inferred from electronic annotation /// 0021915 // neural tube development // not recorded /// 0022008 // neurogenesis // inferred from electronic annotation /// 0022008 // neurogenesis // not recorded /// 0035121 // tail morphogenesis // inferred from electronic annotation /// 0035121 // tail morphogenesis // not recorded /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004035 // alkaline phosphatase activity // inferred from direct assay /// 0004035 // alkaline phosphatase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387759_s_at J02612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J02612.1 /DB_XREF=gi:207576 /FEA=FLmRNA /CNT=10 /TID=Rn.26489.2 /TIER=FL /STK=1 /UG=Rn.26489 /LL=113992 /UG_GENE=Ugt1a6 /UG_TITLE=UDP glycosyltransferase 1 family, polypeptide A6 /DEF=Rat UDP-glucuronosyltransferase mRNA, complete cds. /FL=gb:J05132.1 gb:J02612.1 J02612 UDP glucuronosyltransferase 1 family, polypeptide A1 /// UDP glucuronosyltransferase 1 family, polypeptide A2 /// UDP glycosyltransferase 1 family, polypeptide A3 /// UDP glucuronosyltransferase 1 family, polypeptide A5 /// UDP glucuronosyltransferase 1 family, polypeptide A6 /// UDP glucuronosyltransferase 1 family, polypeptide A7C /// UDP glycosyltransferase 1 family, polypeptide A8 /// UDP glucuronosyltransferase 1 family, polypeptide A9 Ugt1a1 /// Ugt1a2 /// Ugt1a3 /// Ugt1a5 /// Ugt1a6 /// Ugt1a7c /// Ugt1a8 /// Ugt1a9 113992 /// 154516 /// 24861 /// 301595 /// 396527 /// 396551 /// 396552 /// 574523 NM_001039549 /// NM_001039691 /// NM_012683 /// NM_057105 /// NM_130407 /// NM_175846 /// NM_201423 /// NM_201424 /// NM_201425 0001889 // liver development // inferred from expression pattern /// 0006711 // estrogen catabolic process // inferred from direct assay /// 0006789 // bilirubin conjugation // traceable author statement /// 0006805 // xenobiotic metabolic process // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0009812 // flavonoid metabolic process // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0010033 // response to organic substance // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0017144 // drug metabolic process // not recorded /// 0018411 // protein glucuronidation // traceable author statement /// 0018880 // 4-chlorobiphenyl metabolic process // inferred from direct assay /// 0019439 // aromatic compound catabolic process // inferred from direct assay /// 0019585 // glucuronate metabolic process // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042594 // response to starvation // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0045922 // negative regulation of fatty acid metabolic process // not recorded /// 0046226 // coumarin catabolic process // inferred from direct assay /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051552 // flavone metabolic process // not recorded /// 0070980 // biphenyl catabolic process // inferred from direct assay /// 0071361 // cellular response to ethanol // inferred from expression pattern /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern /// 0071385 // cellular response to glucocorticoid stimulus // inferred from direct assay /// 0071407 // cellular response to organic cyclic substance // inferred from expression pattern 0005624 // membrane fraction // inferred from direct assay /// 0005743 // mitochondrial inner membrane // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001972 // retinoic acid binding // not recorded /// 0004857 // enzyme inhibitor activity // not recorded /// 0005496 // steroid binding // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0015020 // glucuronosyltransferase activity // inferred from direct assay /// 0015020 // glucuronosyltransferase activity // inferred from electronic annotation /// 0015020 // glucuronosyltransferase activity // not recorded /// 0015020 // glucuronosyltransferase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1387760_a_at NM_022671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022671.1 /DB_XREF=gi:12083604 /GEN=Hnf6 /FEA=FLmRNA /CNT=1 /TID=Rn.48812.1 /TIER=FL /STK=1 /UG=Rn.48812 /LL=25231 /DEF=Rattus norvegicus Hepatocyte nuclear factor 6 (Hnf6), mRNA. /PROD=hepatocyte nuclear factor 6 /FL=gb:NM_022671.1 NM_022671 one cut homeobox 1 Onecut1 25231 NM_022671 0001889 // liver development // not recorded /// 0001952 // regulation of cell-matrix adhesion // not recorded /// 0002064 // epithelial cell development // not recorded /// 0006006 // glucose metabolic process // inferred from mutant phenotype /// 0006006 // glucose metabolic process // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0007492 // endoderm development // not recorded /// 0009653 // anatomical structure morphogenesis // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0030154 // cell differentiation // not recorded /// 0030183 // B cell differentiation // not recorded /// 0030335 // positive regulation of cell migration // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0031016 // pancreas development // not recorded /// 0031018 // endocrine pancreas development // not recorded /// 0042384 // cilium assembly // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048536 // spleen development // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from mutant phenotype /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1387761_at NM_012632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012632.1 /DB_XREF=gi:6981413 /GEN=Prpb /FEA=FLmRNA /CNT=1 /TID=Rn.9841.1 /TIER=FL /STK=1 /UG=Rn.9841 /LL=24687 /DEF=Rattus norvegicus Proline-rich protein, salivary (Prpb), mRNA. /PROD=proline-rich protein, salivary /FL=gb:NM_012632.1 NM_012632 proline-rich protein 15 Prp15 24687 NM_012632 1387762_s_at NM_138875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_138875.1 /DB_XREF=gi:20302044 /GEN=Jund /FEA=FLmRNA /CNT=1 /TID=Affx.1.32 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus Jun D proto-oncogene (Jund), mRNA. /PROD=jun D proto-oncogene /FL=gb:NM_138875.1 NM_138875 jun D proto-oncogene Jund 24518 NM_138875 0002076 // osteoblast development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0007568 // aging // inferred from expression pattern /// 0007623 // circadian rhythm // inferred from expression pattern /// 0009416 // response to light stimulus // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016922 // ligand-dependent nuclear receptor binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred by curator /// 0046983 // protein dimerization activity // inferred from electronic annotation 1387763_at NM_017317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017317.1 /DB_XREF=gi:8394141 /GEN=ram /FEA=FLmRNA /CNT=1 /TID=Rn.53977.1 /TIER=FL /STK=1 /UG=Rn.53977 /LL=50645 /DEF=Rattus norvegicus low Mr GTP-binding protein (ram), mRNA. /PROD=low Mr GTP-binding protein /FL=gb:NM_017317.1 NM_017317 RAB27A, member RAS oncogene family Rab27a 50645 NM_017317 0006605 // protein targeting // inferred from electronic annotation /// 0006605 // protein targeting // not recorded /// 0006887 // exocytosis // not recorded /// 0006887 // exocytosis // traceable author statement /// 0006887 // exocytosis // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation /// 0007596 // blood coagulation // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0030318 // melanocyte differentiation // inferred from electronic annotation /// 0030318 // melanocyte differentiation // not recorded /// 0032400 // melanosome localization // inferred from electronic annotation /// 0032400 // melanosome localization // not recorded /// 0032402 // melanosome transport // inferred from electronic annotation /// 0032402 // melanosome transport // not recorded /// 0043316 // cytotoxic T cell degranulation // inferred from electronic annotation /// 0043316 // cytotoxic T cell degranulation // not recorded /// 0043320 // natural killer cell degranulation // inferred from electronic annotation /// 0043320 // natural killer cell degranulation // not recorded /// 0043473 // pigmentation // inferred from electronic annotation /// 0043473 // pigmentation // not recorded /// 0051875 // pigment granule localization // not recorded /// 0051875 // pigment granule localization // inferred from electronic annotation /// 0051904 // pigment granule transport // not recorded /// 0051904 // pigment granule transport // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay /// 0030141 // stored secretory granule // not recorded /// 0030141 // stored secretory granule // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0030667 // secretory granule membrane // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0042470 // melanosome // not recorded /// 0070382 // exocytic vesicle // inferred from electronic annotation /// 0070382 // exocytic vesicle // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0005525 // GTP binding // inferred from electronic annotation /// 0031489 // myosin V binding // inferred from electronic annotation /// 0031489 // myosin V binding // not recorded 1387764_at NM_017095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017095.1 /DB_XREF=gi:8393089 /GEN=Cebpe /FEA=FLmRNA /CNT=1 /TID=Rn.44462.1 /TIER=FL /STK=1 /UG=Rn.44462 /LL=25410 /DEF=Rattus norvegicus CCAAT enhancer binding protein (CEBP), epsilon (Cebpe), mRNA. /PROD=CCAAT enhancer binding protein (CEBP),epsilon /FL=gb:NM_017095.1 NM_017095 CCAAT/enhancer binding protein (C/EBP), epsilon Cebpe 25410 NM_017095 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006909 // phagocytosis // inferred from electronic annotation /// 0006909 // phagocytosis // not recorded /// 0030099 // myeloid cell differentiation // inferred from expression pattern /// 0030225 // macrophage differentiation // inferred from electronic annotation /// 0030225 // macrophage differentiation // not recorded /// 0042089 // cytokine biosynthetic process // inferred from electronic annotation /// 0042089 // cytokine biosynthetic process // not recorded /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0042742 // defense response to bacterium // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from expression pattern /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046983 // protein dimerization activity // inferred from electronic annotation 1387765_at NM_012599 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012599.1 /DB_XREF=gi:6981187 /GEN=Mbpa /FEA=FLmRNA /CNT=1 /TID=Rn.10273.1 /TIER=FL /STK=1 /UG=Rn.10273 /LL=24548 /DEF=Rattus norvegicus Mannose binding protein A, serum (Mbpa), mRNA. /PROD=mannose binding protein A, serum /FL=gb:NM_012599.1 NM_012599 mannose-binding lectin (protein A) 1 Mbl1 24548 NM_012599 0001867 // complement activation, lectin pathway // inferred from direct assay /// 0001867 // complement activation, lectin pathway // not recorded /// 0001867 // complement activation, lectin pathway // inferred from electronic annotation /// 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0044130 // negative regulation of growth of symbiont in host // inferred from electronic annotation /// 0044130 // negative regulation of growth of symbiont in host // not recorded /// 0045087 // innate immune response // inferred from electronic annotation /// 0050766 // positive regulation of phagocytosis // inferred from electronic annotation /// 0050766 // positive regulation of phagocytosis // not recorded /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // not recorded /// 0051873 // killing by host of symbiont cells // inferred from electronic annotation /// 0051873 // killing by host of symbiont cells // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005529 // sugar binding // inferred from electronic annotation /// 0005537 // mannose binding // inferred from direct assay /// 0005537 // mannose binding // inferred from electronic annotation /// 0030247 // polysaccharide binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0048306 // calcium-dependent protein binding // inferred from physical interaction 1387766_a_at NM_012640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012640.1 /DB_XREF=gi:6981465 /GEN=Rbp2 /FEA=FLmRNA /CNT=1 /TID=Rn.9828.1 /TIER=FL /STK=1 /UG=Rn.9828 /LL=24710 /DEF=Rattus norvegicus Retinol-binding protein 2, cellular (Rbp2), mRNA. /PROD=retinol-binding protein 2, cellular /FL=gb:NM_012640.1 NM_012640 retinol binding protein 2, cellular Rbp2 24710 NM_012640 0006810 // transport // inferred from electronic annotation /// 0042572 // retinol metabolic process // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0016918 // retinal binding // inferred from electronic annotation /// 0019841 // retinol binding // traceable author statement /// 0019841 // retinol binding // inferred from electronic annotation 1387767_a_at AF305418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF305418.1 /DB_XREF=gi:10444515 /FEA=mRNA /CNT=1 /TID=Rn.10124.2 /TIER=ConsEnd /STK=0 /UG=Rn.10124 /LL=25412 /UG_GENE=Col2a1 /DEF=Rattus norvegicus type II collagen mRNA, partial cds. /PROD=type II collagen AF305418 collagen, type II, alpha 1 Col2a1 25412 NM_012929 0001501 // skeletal system development // not recorded /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001502 // cartilage condensation // not recorded /// 0001502 // cartilage condensation // inferred from electronic annotation /// 0001894 // tissue homeostasis // not recorded /// 0001894 // tissue homeostasis // inferred from electronic annotation /// 0001958 // endochondral ossification // not recorded /// 0001958 // endochondral ossification // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // not recorded /// 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0006029 // proteoglycan metabolic process // not recorded /// 0006029 // proteoglycan metabolic process // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0007601 // visual perception // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0030199 // collagen fibril organization // not recorded /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0035108 // limb morphogenesis // not recorded /// 0035108 // limb morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // not recorded /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0048839 // inner ear development // not recorded /// 0048839 // inner ear development // inferred from electronic annotation /// 0051216 // cartilage development // inferred from expression pattern /// 0051216 // cartilage development // not recorded /// 0051216 // cartilage development // inferred from electronic annotation /// 0060021 // palate development // not recorded /// 0060021 // palate development // inferred from electronic annotation /// 0060272 // embryonic skeletal joint morphogenesis // not recorded /// 0060272 // embryonic skeletal joint morphogenesis // inferred from electronic annotation /// 0060348 // bone development // not recorded /// 0060348 // bone development // inferred from electronic annotation /// 0060351 // cartilage development involved in endochondral bone morphogenesis // not recorded /// 0060351 // cartilage development involved in endochondral bone morphogenesis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen // inferred from electronic annotation /// 0005581 // collagen // not recorded /// 0005585 // collagen type II // not recorded /// 0005585 // collagen type II // traceable author statement /// 0005585 // collagen type II // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // traceable author statement /// 0048407 // platelet-derived growth factor binding // not recorded /// 0048407 // platelet-derived growth factor binding // inferred from electronic annotation 1387768_at NM_021588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021588.1 /DB_XREF=gi:11024649 /GEN=Mb /FEA=FLmRNA /CNT=61 /TID=Rn.40511.1 /TIER=FL+Stack /STK=54 /UG=Rn.40511 /LL=59108 /DEF=Rattus norvegicus myoglobin (Mb), mRNA. /PROD=myoglobin /FL=gb:AF197916.1 gb:NM_021588.1 NM_021588 myoglobin Mb 59108 NM_021588 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0009725 // response to hormone stimulus // inferred from direct assay /// 0015671 // oxygen transport // inferred from direct assay /// 0015671 // oxygen transport // inferred from electronic annotation /// 0031444 // slow-twitch skeletal muscle fiber contraction // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from direct assay /// 0043353 // enucleate erythrocyte differentiation // inferred from electronic annotation /// 0043353 // enucleate erythrocyte differentiation // not recorded /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded 0005344 // oxygen transporter activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0019825 // oxygen binding // inferred from direct assay /// 0019825 // oxygen binding // inferred from electronic annotation /// 0020037 // heme binding // non-traceable author statement /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387769_a_at AF000942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF000942.1 /DB_XREF=gi:4100523 /FEA=FLmRNA /CNT=1 /TID=Rn.2760.2 /TIER=FL /STK=1 /UG=Rn.2760 /LL=25585 /UG_GENE=Id3 /DEF=Rattus norvegicus Id3a mRNA, complete cds. /PROD=Id3a /FL=gb:AF000942.1 AF000942 inhibitor of DNA binding 3 Id3 25585 NM_013058 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001656 // metanephros development // inferred from electronic annotation /// 0001656 // metanephros development // not recorded /// 0006275 // regulation of DNA replication // inferred from mutant phenotype /// 0006351 // transcription, DNA-dependent // not recorded /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0009611 // response to wounding // inferred from expression pattern /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from expression pattern /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0030903 // notochord development // inferred from electronic annotation /// 0030903 // notochord development // not recorded /// 0042476 // odontogenesis // inferred from electronic annotation /// 0042476 // odontogenesis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043433 // negative regulation of transcription factor activity // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // traceable author statement /// 0051726 // regulation of cell cycle // inferred from mutant phenotype /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0019904 // protein domain specific binding // not recorded /// 0019904 // protein domain specific binding // traceable author statement /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043425 // bHLH transcription factor binding // traceable author statement 1387770_at NM_130743 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130743.1 /DB_XREF=gi:18543348 /GEN=Ifi27l /FEA=FLmRNA /CNT=49 /TID=Rn.3867.1 /TIER=FL+Stack /STK=36 /UG=Rn.3867 /LL=170512 /DEF=Rattus norvegicus interferon, alpha-inducible protein 27-like (Ifi27l), mRNA. /PROD=interferon, alpha-inducible protein 27-like /FL=gb:AF154572.1 gb:NM_130743.1 NM_130743 interferon, alpha-inducible protein 27 Ifi27 170512 NM_203410 0006919 // activation of caspase activity // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0060135 // maternal process involved in female pregnancy // inferred from expression pattern 0005739 // mitochondrion // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 1387771_a_at AF155236 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF155236.1 /DB_XREF=gi:8050444 /GEN=ERK1b /FEA=FLmRNA /CNT=2 /TID=Rn.2592.2 /TIER=FL /STK=0 /UG=Rn.2592 /LL=50689 /DEF=Rattus norvegicus extracellular signal-regulated kinase 1b (ERK1b) mRNA, complete cds. /PROD=extracellular signal-regulated kinase 1b /FL=gb:AF155236.1 AF155236 mitogen activated protein kinase 3 Mapk3 50689 NM_017347 0000165 // MAPKKK cascade // inferred from mutant phenotype /// 0000189 // nuclear translocation of MAPK // inferred from direct assay /// 0006461 // protein complex assembly // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // traceable author statement /// 0006974 // response to DNA damage stimulus // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007243 // intracellular protein kinase cascade // traceable author statement /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0009636 // response to toxin // inferred from direct assay /// 0009887 // organ morphogenesis // not recorded /// 0016310 // phosphorylation // not recorded /// 0019233 // sensory perception of pain // not recorded /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0031663 // lipopolysaccharide-mediated signaling pathway // not recorded /// 0032496 // response to lipopolysaccharide // not recorded /// 0043330 // response to exogenous dsRNA // not recorded /// 0045727 // positive regulation of translation // inferred from mutant phenotype /// 0045941 // positive regulation of transcription // inferred from expression pattern /// 0051090 // regulation of transcription factor activity // not recorded /// 0051216 // cartilage development // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0015630 // microtubule cytoskeleton // not recorded /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001784 // phosphotyrosine binding // not recorded /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred by curator /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004707 // MAP kinase activity // inferred from direct assay /// 0004707 // MAP kinase activity // inferred from electronic annotation /// 0004707 // MAP kinase activity // not recorded /// 0004707 // MAP kinase activity // traceable author statement /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded 1387772_at NM_031969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031969.1 /DB_XREF=gi:14010862 /GEN=Calm1 /FEA=FLmRNA /CNT=138 /TID=Rn.4166.1 /TIER=FL+Stack /STK=26 /UG=Rn.4166 /LL=24242 /DEF=Rattus norvegicus Calmodulin 1 (phosphorylase kinase, delta) (Calm1), mRNA. /PROD=calmodulin 1 (phosphorylase kinase, delta) /FL=gb:NM_031969.1 gb:AF178845.1 NM_031969 calmodulin 1 Calm1 24242 NM_031969 0006936 // muscle contraction // not recorded /// 0007049 // cell cycle // not recorded /// 0032465 // regulation of cytokinesis // inferred from electronic annotation /// 0032465 // regulation of cytokinesis // not recorded /// 0043388 // positive regulation of DNA binding // not recorded /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded 0000922 // spindle pole // inferred from electronic annotation /// 0000922 // spindle pole // not recorded /// 0005576 // extracellular region // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded 0005246 // calcium channel regulator activity // non-traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0031432 // titin binding // inferred from electronic annotation /// 0031432 // titin binding // not recorded /// 0031996 // thioesterase binding // not recorded /// 0031997 // N-terminal myristoylation domain binding // inferred from electronic annotation /// 0031997 // N-terminal myristoylation domain binding // not recorded /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction /// 0048306 // calcium-dependent protein binding // inferred from physical interaction 1387773_at NM_012839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012839.1 /DB_XREF=gi:6978724 /GEN=Cycs /FEA=FLmRNA /CNT=112 /TID=Rn.2202.1 /TIER=FL+Stack /STK=25 /UG=Rn.2202 /LL=25309 /DEF=Rattus norvegicus Cytochrome C, expressed in somatic tissues (Cycs), mRNA. /PROD=cytochrome C, expressed in somatic tissues /FL=gb:NM_012839.1 NM_012839 cytochrome c, somatic Cycs 25309 NM_012839 0006123 // mitochondrial electron transport, cytochrome c to oxygen // inferred from direct assay /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // inferred from mutant phenotype /// 0006915 // apoptosis // not recorded /// 0006979 // response to oxidative stress // inferred from direct assay /// 0008635 // activation of caspase activity by cytochrome c // not recorded /// 0008635 // activation of caspase activity by cytochrome c // traceable author statement /// 0022900 // electron transport chain // inferred from electronic annotation /// 0034349 // glial cell apoptosis // inferred from expression pattern /// 0042743 // hydrogen peroxide metabolic process // not recorded /// 0043065 // positive regulation of apoptosis // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005746 // mitochondrial respiratory chain // inferred by curator /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0070469 // respiratory chain // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008289 // lipid binding // traceable author statement /// 0009055 // electron carrier activity // inferred from direct assay /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0020037 // heme binding // not recorded /// 0045155 // electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1387774_at D17615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D17615.1 /DB_XREF=gi:402510 /FEA=FLmRNA /CNT=47 /TID=Rn.1292.1 /TIER=FL+Stack /STK=24 /UG=Rn.1292 /LL=25578 /UG_GENE=Ywhaz /DEF=Rattus norvegicus mRNA for 14-3-3 protein zeta-subtype, complete cds. /PROD=14-3-3 protein zeta-subtype /FL=gb:NM_013011.1 gb:D17615.1 gb:U37252.1 D17615 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Ywhaz 25578 NM_013011 0002553 // histamine secretion by mast cell // inferred from mutant phenotype /// 0006605 // protein targeting // not recorded /// 0006605 // protein targeting // inferred from electronic annotation /// 0006626 // protein targeting to mitochondrion // inferred from direct assay /// 0042493 // response to drug // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0019904 // protein domain specific binding // not recorded /// 0019904 // protein domain specific binding // inferred from sequence or structural similarity /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1387775_at NM_053345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053345.1 /DB_XREF=gi:16758063 /GEN=Gtf2a2 /FEA=FLmRNA /CNT=36 /TID=Rn.4053.1 /TIER=FL+Stack /STK=23 /UG=Rn.4053 /LL=83828 /DEF=Rattus norvegicus general transcription factor IIa, 2 (12kD subunit) (Gtf2a2), mRNA. /PROD=general transcription factor IIa, 2 (12kDsubunit) /FL=gb:NM_053345.1 gb:AF000944.1 NM_053345 general transcription factor IIA, 2 Gtf2a2 83828 NM_053345 0006350 // transcription // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0032568 // general transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0032568 // general transcription from RNA polymerase II promoter // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051091 // positive regulation of transcription factor activity // inferred from electronic annotation /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0051123 // RNA polymerase II transcriptional preinitiation complex assembly // inferred from electronic annotation /// 0051123 // RNA polymerase II transcriptional preinitiation complex assembly // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005672 // transcription factor TFIIA complex // inferred from electronic annotation /// 0005672 // transcription factor TFIIA complex // not recorded 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0016251 // general RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0016251 // general RNA polymerase II transcription factor activity // not recorded /// 0017025 // TATA-binding protein binding // inferred from electronic annotation /// 0017025 // TATA-binding protein binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1387776_at BI275994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275994 /DB_XREF=gi:14920469 /DB_XREF=UI-R-CX0-bxi-h-05-0-UI.s1 /CLONE=UI-R-CX0-bxi-h-05-0-UI /FEA=FLmRNA /CNT=41 /TID=Rn.10.1 /TIER=Stack /STK=10 /UG=Rn.10 /LL=56083 /UG_GENE=Tgm2 /UG_TITLE=tissue-type transglutaminase /FL=gb:NM_019386.1 gb:AF106325.1 BI275994 transglutaminase 2, C polypeptide Tgm2 56083 NM_019386 0001974 // blood vessel remodeling // inferred from mutant phenotype /// 0006917 // induction of apoptosis // inferred from direct assay /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0018149 // peptide cross-linking // inferred from electronic annotation /// 0018153 // isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from mutant phenotype /// 0043277 // apoptotic cell clearance // not recorded /// 0043277 // apoptotic cell clearance // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // not recorded /// 0045785 // positive regulation of cell adhesion // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from direct assay /// 0050729 // positive regulation of inflammatory response // inferred from mutant phenotype /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // inferred from mutant phenotype /// 0060445 // branching involved in salivary gland morphogenesis // not recorded /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060662 // salivary gland cavitation // not recorded /// 0060662 // salivary gland cavitation // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0003810 // protein-glutamine gamma-glutamyltransferase activity // inferred from direct assay /// 0003810 // protein-glutamine gamma-glutamyltransferase activity // not recorded /// 0003810 // protein-glutamine gamma-glutamyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0019899 // enzyme binding // inferred by curator /// 0019904 // protein domain specific binding // inferred from physical interaction 1387777_at NM_133409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133409.1 /DB_XREF=gi:19173771 /GEN=Ilk /FEA=FLmRNA /CNT=30 /TID=Rn.37725.1 /TIER=FL+Stack /STK=21 /UG=Rn.37725 /LL=170922 /DEF=Rattus norvegicus integrin-linked kinase (Ilk), mRNA. /PROD=integrin-linked kinase /FL=gb:NM_133409.1 gb:AF329194.1 NM_133409 integrin-linked kinase Ilk 170922 NM_133409 0001558 // regulation of cell growth // inferred from mutant phenotype /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001954 // positive regulation of cell-matrix adhesion // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from mutant phenotype /// 0007050 // cell cycle arrest // inferred from mutant phenotype /// 0007229 // integrin-mediated signaling pathway // inferred from mutant phenotype /// 0007229 // integrin-mediated signaling pathway // not recorded /// 0007569 // cell aging // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0009966 // regulation of signal transduction // inferred from electronic annotation /// 0010667 // negative regulation of cardiac muscle cell apoptosis // inferred from mutant phenotype /// 0014912 // negative regulation of smooth muscle cell migration // inferred from mutant phenotype /// 0018105 // peptidyl-serine phosphorylation // inferred from mutant phenotype /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0032288 // myelin assembly // inferred from mutant phenotype /// 0032956 // regulation of actin cytoskeleton organization // inferred from mutant phenotype /// 0034446 // substrate adhesion-dependent cell spreading // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0043206 // fibril organization // inferred from mutant phenotype /// 0043406 // positive regulation of MAP kinase activity // inferred from mutant phenotype /// 0043410 // positive regulation of MAPKKK cascade // inferred from mutant phenotype /// 0043524 // negative regulation of neuron apoptosis // inferred from mutant phenotype /// 0045197 // establishment or maintenance of epithelial cell apical/basal polarity // inferred from electronic annotation /// 0045197 // establishment or maintenance of epithelial cell apical/basal polarity // not recorded /// 0045663 // positive regulation of myoblast differentiation // inferred from mutant phenotype /// 0045773 // positive regulation of axon extension // inferred from mutant phenotype /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0048812 // neuron projection morphogenesis // inferred from mutant phenotype /// 0050772 // positive regulation of axonogenesis // inferred from mutant phenotype /// 0050775 // positive regulation of dendrite morphogenesis // inferred from mutant phenotype /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051291 // protein heterooligomerization // inferred from physical interaction /// 0051897 // positive regulation of protein kinase B signaling cascade // inferred from mutant phenotype 0001725 // stress fiber // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043034 // costamere // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from mutant phenotype /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from direct assay /// 0005178 // integrin binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from direct assay /// 0019904 // protein domain specific binding // inferred by curator 1387778_at NM_130412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130412.1 /DB_XREF=gi:18426835 /GEN=Sdf4 /FEA=FLmRNA /CNT=32 /TID=Rn.12964.1 /TIER=FL+Stack /STK=21 /UG=Rn.12964 /DEF=Rattus norvegicus stromal cell derived factor 4 (Sdf4), mRNA. /PROD=stromal cell derived factor 4 /FL=gb:NM_130412.1 gb:AF405545.1 NM_130412 stromal cell derived factor 4 Sdf4 155173 NM_130412 0006887 // exocytosis // inferred from electronic annotation /// 0009650 // UV protection // inferred from mutant phenotype /// 0017156 // calcium ion-dependent exocytosis // inferred from mutant phenotype /// 0021549 // cerebellum development // inferred from expression pattern /// 0045444 // fat cell differentiation // not recorded /// 0045444 // fat cell differentiation // inferred from sequence or structural similarity /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from expression pattern /// 0070625 // zymogen granule exocytosis // inferred from mutant phenotype 0005625 // soluble fraction // not recorded /// 0005625 // soluble fraction // inferred from sequence or structural similarity /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0005770 // late endosome // not recorded /// 0005770 // late endosome // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005796 // Golgi lumen // not recorded /// 0005796 // Golgi lumen // inferred from sequence or structural similarity /// 0005796 // Golgi lumen // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // inferred from physical interaction 1387779_at NM_031668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031668.1 /DB_XREF=gi:13928925 /GEN=Mybbp1a /FEA=FLmRNA /CNT=25 /TID=Rn.35696.1 /TIER=FL+Stack /STK=19 /UG=Rn.35696 /LL=60571 /DEF=Rattus norvegicus MYB binding protein (P160) 1a (Mybbp1a), mRNA. /PROD=MYB binding protein (P160) 1a /FL=gb:NM_031668.1 gb:U83590.1 NM_031668 MYB binding protein (P160) 1a Mybbp1a 60571 NM_031668 0006350 // transcription // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // not recorded /// 0006913 // nucleocytoplasmic transport // inferred from sequence or structural similarity /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0042564 // NLS-dependent protein nuclear import complex // not recorded /// 0042564 // NLS-dependent protein nuclear import complex // inferred from sequence or structural similarity /// 0042564 // NLS-dependent protein nuclear import complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // non-traceable author statement /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded 1387780_at NM_032079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032079.1 /DB_XREF=gi:14091767 /GEN=Dnaja2 /FEA=FLmRNA /CNT=31 /TID=Rn.3904.1 /TIER=FL+Stack /STK=18 /UG=Rn.3904 /LL=84026 /DEF=Rattus norvegicus DnaJ (Hsp40) homolog, subfamily A, member 2 (Dnaja2), mRNA. /PROD=DnaJ (Hsp40) homolog, subfamily A, member 2 /FL=gb:U95727.1 gb:NM_032079.1 NM_032079 DnaJ (Hsp40) homolog, subfamily A, member 2 Dnaja2 84026 NM_032079 0006457 // protein folding // inferred from electronic annotation /// 0009408 // response to heat // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1387781_at NM_022395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022395.1 /DB_XREF=gi:11693165 /GEN=Pmpcb /FEA=FLmRNA /CNT=25 /TID=Rn.841.1 /TIER=FL+Stack /STK=17 /UG=Rn.841 /LL=64198 /DEF=Rattus norvegicus mitochondrial processing peptidase beta (Pmpcb), mRNA. /PROD=mitochondrial processing peptidase beta /FL=gb:L12965.1 gb:NM_022395.1 NM_022395 peptidase (mitochondrial processing) beta Pmpcb 64198 NM_022395 0006508 // proteolysis // inferred from electronic annotation /// 0006627 // protein processing involved in protein targeting to mitochondrion // traceable author statement 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387782_at NM_080697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080697.1 /DB_XREF=gi:18093105 /GEN=Dlc2 /FEA=FLmRNA /CNT=22 /TID=Rn.36362.1 /TIER=FL+Stack /STK=16 /UG=Rn.36362 /LL=140734 /DEF=Rattus norvegicus dynein light chain-2 (Dlc2), mRNA. /PROD=dynein light chain-2 /FL=gb:NM_080697.1 gb:AY034383.1 NM_080697 dynein light chain LC8-type 2 Dynll2 140734 NM_080697 0006810 // transport // inferred from electronic annotation /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0008039 // synaptic target recognition // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016459 // myosin complex // inferred from electronic annotation /// 0016459 // myosin complex // not recorded /// 0030286 // dynein complex // inferred from electronic annotation 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from direct assay 1387783_a_at NM_012489 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012489.1 /DB_XREF=gi:6978428 /GEN=Acaa1 /FEA=FLmRNA /CNT=20 /TID=Rn.8913.1 /TIER=FL+Stack /STK=15 /UG=Rn.8913 /LL=24157 /DEF=Rattus norvegicus Acetyl-CoA acyltransferase, 3-oxo acyl-CoA thiolase A 1, peroxisomal (Acaa1), mRNA. /PROD=acetyl-CoA acyltransferase, 3-oxo acyl-CoAthiolase A, peroxisomal /FL=gb:NM_012489.1 gb:M32801.1 NM_012489 acetyl-Coenzyme A acyltransferase 1 /// similar to 3-ketoacyl-CoA thiolase B, peroxisomal precursor (Beta-ketothiolase B) Acaa1 /// RGD1562373 24157 /// 501072 NM_001040019 /// NM_012489 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0033540 // fatty acid beta-oxidation using acyl-CoA oxidase // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0048545 // response to steroid hormone stimulus // inferred from direct assay 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation /// 0005782 // peroxisomal matrix // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0003988 // acetyl-CoA C-acyltransferase activity // inferred from electronic annotation /// 0003988 // acetyl-CoA C-acyltransferase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation 1387784_at NM_053925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053925.1 /DB_XREF=gi:16758979 /GEN=Psmd10 /FEA=FLmRNA /CNT=29 /TID=Rn.18378.1 /TIER=FL+Stack /STK=14 /UG=Rn.18378 /LL=116722 /DEF=Rattus norvegicus proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 (Psmd10), mRNA. /PROD=proteasome (prosome, macropain) 26S subunit,non-ATPase, 10 /FL=gb:AB022014.1 gb:NM_053925.1 NM_053925 proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 Psmd10 116722 NM_053925 0007253 // cytoplasmic sequestering of NF-kappaB // not recorded /// 0007253 // cytoplasmic sequestering of NF-kappaB // inferred from sequence or structural similarity /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0030307 // positive regulation of cell growth // not recorded /// 0030307 // positive regulation of cell growth // inferred from sequence or structural similarity /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0031398 // positive regulation of protein ubiquitination // inferred from sequence or structural similarity /// 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0043409 // negative regulation of MAPKKK cascade // not recorded /// 0043409 // negative regulation of MAPKKK cascade // inferred from sequence or structural similarity /// 0043518 // negative regulation of DNA damage response, signal transduction by p53 class mediator // not recorded /// 0043518 // negative regulation of DNA damage response, signal transduction by p53 class mediator // inferred from sequence or structural similarity /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // not recorded /// 0045737 // positive regulation of cyclin-dependent protein kinase activity // inferred from sequence or structural similarity /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070682 // proteasome regulatory particle assembly // not recorded /// 0070682 // proteasome regulatory particle assembly // inferred from sequence or structural similarity /// 0090201 // negative regulation of release of cytochrome c from mitochondria // not recorded /// 0090201 // negative regulation of release of cytochrome c from mitochondria // inferred from sequence or structural similarity 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0015629 // actin cytoskeleton // not recorded /// 0045111 // intermediate filament cytoskeleton // not recorded 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded 1387785_at U21661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U21661.1 /DB_XREF=gi:903891 /FEA=FLmRNA /CNT=31 /TID=Rn.3122.1 /TIER=FL+Stack /STK=9 /UG=Rn.3122 /LL=79215 /UG_GENE=Gcdp /DEF=Rattus norvegicus myotrophin mRNA, complete cds. /PROD=myotrophin /FL=gb:NM_024374.1 gb:D26179.1 gb:U21661.1 U21661 myotrophin Mtpn 79215 NM_024374 0006584 // catecholamine metabolic process // inferred from expression pattern /// 0021707 // cerebellar granule cell differentiation // inferred from expression pattern /// 0030182 // neuron differentiation // non-traceable author statement /// 0043403 // skeletal muscle tissue regeneration // inferred from expression pattern /// 0051146 // striated muscle cell differentiation // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1387786_at AI711244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711244 /DB_XREF=gi:5001020 /DB_XREF=UI-R-AE1-zc-h-03-0-UI.s1 /CLONE=UI-R-AE1-zc-h-03-0-UI /FEA=FLmRNA /CNT=31 /TID=Rn.3122.1 /TIER=ConsEnd /STK=0 /UG=Rn.3122 /LL=79215 /UG_GENE=Gcdp /UG_TITLE=V-1 protein /FL=gb:NM_024374.1 gb:D26179.1 gb:U21661.1 AI711244 myotrophin Mtpn 79215 NM_024374 0006584 // catecholamine metabolic process // inferred from expression pattern /// 0021707 // cerebellar granule cell differentiation // inferred from expression pattern /// 0030182 // neuron differentiation // non-traceable author statement /// 0043403 // skeletal muscle tissue regeneration // inferred from expression pattern /// 0051146 // striated muscle cell differentiation // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1387787_at NM_012605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012605.1 /DB_XREF=gi:6981237 /GEN=Myl2 /FEA=FLmRNA /CNT=15 /TID=Rn.6534.1 /TIER=FL+Stack /STK=9 /UG=Rn.6534 /LL=24584 /DEF=Rattus norvegicus Myosin, light polypeptide 2, alkali; ventricular, skeletal, slow (Myl2), mRNA. /PROD=myosin, light polypeptide 2, alkali;ventricular, skeletal, slow /FL=gb:NM_012605.1 NM_012605 myosin light chain, phosphorylatable, fast skeletal muscle Mylpf 24584 NM_012605 0006936 // muscle contraction // traceable author statement /// 0006955 // immune response // inferred from expression pattern /// 0007507 // heart development // not recorded /// 0007519 // skeletal muscle tissue development // inferred from expression pattern /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0042694 // muscle cell fate specification // not recorded /// 0055003 // cardiac myofibril assembly // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0060047 // heart contraction // not recorded 0005856 // cytoskeleton // not recorded /// 0015629 // actin cytoskeleton // not recorded /// 0016459 // myosin complex // inferred from electronic annotation /// 0030016 // myofibril // not recorded 0003774 // motor activity // inferred from electronic annotation /// 0003785 // actin monomer binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // not recorded /// 0008307 // structural constituent of muscle // inferred from electronic annotation 1387788_at NM_021836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021836.1 /DB_XREF=gi:11177865 /GEN=Junb /FEA=FLmRNA /CNT=17 /TID=Rn.15806.1 /TIER=FL+Stack /STK=9 /UG=Rn.15806 /LL=24517 /DEF=Rattus norvegicus jun B proto-oncogene (Junb), mRNA. /PROD=jun B proto-oncogene /FL=gb:NM_021836.1 NM_021836 jun B proto-oncogene Junb 24517 NM_021836 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001829 // trophectodermal cell differentiation // inferred from electronic annotation /// 0001829 // trophectodermal cell differentiation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0007565 // female pregnancy // inferred from expression pattern /// 0009416 // response to light stimulus // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009987 // cellular process // inferred from electronic annotation /// 0009987 // cellular process // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030316 // osteoclast differentiation // inferred from electronic annotation /// 0030316 // osteoclast differentiation // not recorded /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0033687 // osteoblast proliferation // inferred from electronic annotation /// 0033687 // osteoblast proliferation // not recorded /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // not recorded /// 0046022 // positive regulation of transcription from RNA polymerase II promoter during mitosis // inferred from direct assay /// 0046697 // decidualization // inferred from electronic annotation /// 0046697 // decidualization // not recorded /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded /// 0060136 // embryonic process involved in female pregnancy // inferred from electronic annotation /// 0060136 // embryonic process involved in female pregnancy // not recorded /// 0060716 // labyrinthine layer blood vessel development // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred by curator /// 0046983 // protein dimerization activity // inferred from electronic annotation 1387789_at NM_133397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133397.1 /DB_XREF=gi:19173755 /GEN=Erg /FEA=FLmRNA /CNT=13 /TID=Rn.50673.1 /TIER=FL+Stack /STK=9 /UG=Rn.50673 /DEF=Rattus norvegicus v-ets erythroblastosis virus E26 oncogene like (avian) (Erg), mRNA. /PROD=v-ets erythroblastosis virus E26 oncogene like(avian) /FL=gb:NM_133397.1 gb:AB031088.1 NM_133397 v-ets erythroblastosis virus E26 oncogene homolog (avian) Erg 170909 NM_133397 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1387790_at NM_080910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080910.1 /DB_XREF=gi:18266725 /GEN=Paics /FEA=FLmRNA /CNT=36 /TID=Rn.3015.1 /TIER=FL+Stack /STK=8 /UG=Rn.3015 /LL=140946 /DEF=Rattus norvegicus phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole succinocarboxamide synthetase (Paics), mRNA. /PROD=phosphoribosylaminoimidazole carboxylase,phosphoribosylaminoribosylaminoimidazolesuccinocarboxamide synthetase /FL=gb:NM_080910.1 gb:D37979.1 NM_080910 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase Paics 140946 NM_080910 0006164 // purine nucleotide biosynthetic process // inferred from electronic annotation /// 0006189 // 'de novo' IMP biosynthetic process // inferred from electronic annotation /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004638 // phosphoribosylaminoimidazole carboxylase activity // inferred from electronic annotation /// 0004639 // phosphoribosylaminoimidazolesuccinocarboxamide synthase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1387791_at AF201331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF201331.1 /DB_XREF=gi:11493660 /GEN=Ace /FEA=FLmRNA /CNT=20 /TID=Rn.10149.1 /TIER=FL+Stack /STK=8 /UG=Rn.10149 /LL=24310 /DEF=Rattus norvegicus strain F344N angiotensin-converting enzyme (Ace) mRNA, complete cds. /PROD=angiotensin-converting enzyme /FL=gb:U03708.1 gb:AF201332.1 gb:AF201331.1 gb:NM_012544.1 gb:U03734.1 AF201331 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 Ace 24310 NM_012544 0001666 // response to hypoxia // inferred from expression pattern /// 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0002446 // neutrophil mediated immunity // inferred from electronic annotation /// 0002446 // neutrophil mediated immunity // not recorded /// 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006518 // peptide metabolic process // inferred from mutant phenotype /// 0008217 // regulation of blood pressure // inferred from direct assay /// 0008217 // regulation of blood pressure // traceable author statement /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0014910 // regulation of smooth muscle cell migration // inferred from direct assay /// 0019233 // sensory perception of pain // inferred from mutant phenotype /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from mutant phenotype /// 0042310 // vasoconstriction // inferred from mutant phenotype /// 0042447 // hormone catabolic process // inferred from electronic annotation /// 0042447 // hormone catabolic process // not recorded /// 0042755 // eating behavior // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043171 // peptide catabolic process // inferred from electronic annotation /// 0043171 // peptide catabolic process // not recorded /// 0050482 // arachidonic acid secretion // inferred from electronic annotation /// 0050482 // arachidonic acid secretion // not recorded /// 0050729 // positive regulation of inflammatory response // inferred from mutant phenotype /// 0050769 // positive regulation of neurogenesis // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008144 // drug binding // inferred from electronic annotation /// 0008144 // drug binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from direct assay /// 0008237 // metallopeptidase activity // not recorded /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008241 // peptidyl-dipeptidase activity // inferred from direct assay /// 0008241 // peptidyl-dipeptidase activity // not recorded /// 0008241 // peptidyl-dipeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0031404 // chloride ion binding // inferred from electronic annotation /// 0031404 // chloride ion binding // not recorded /// 0031711 // bradykinin receptor binding // inferred from electronic annotation /// 0031711 // bradykinin receptor binding // not recorded /// 0042277 // peptide binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1387792_at NM_023102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023102.1 /DB_XREF=gi:12831222 /GEN=Csnk1g2 /FEA=FLmRNA /CNT=19 /TID=Rn.845.1 /TIER=FL+Stack /STK=8 /UG=Rn.845 /LL=65278 /DEF=Rattus norvegicus casein kinase 1 gamma 2 isoform (Csnk1g2), mRNA. /PROD=casein kinase 1 gamma 2 isoform /FL=gb:NM_023102.1 gb:U22297.1 NM_023102 casein kinase 1, gamma 2 Csnk1g2 65278 NM_001033870 /// NM_023102 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0001948 // glycoprotein binding // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0051219 // phosphoprotein binding // inferred from direct assay 1387793_at NM_021594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021594.1 /DB_XREF=gi:11024673 /GEN=LOC59114 /FEA=FLmRNA /CNT=33 /TID=Rn.35142.1 /TIER=FL+Stack /STK=8 /UG=Rn.35142 /LL=59114 /DEF=Rattus norvegicus ERM-binding phosphoprotein (LOC59114), mRNA. /PROD=ERM-binding phosphoprotein /FL=gb:AF154336.1 gb:NM_021594.1 NM_021594 solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1 Slc9a3r1 59114 NM_021594 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030643 // cellular phosphate ion homeostasis // inferred from electronic annotation /// 0030643 // cellular phosphate ion homeostasis // not recorded 0001726 // ruffle // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005902 // microvillus // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0030175 // filopodium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0045177 // apical part of cell // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // not recorded /// 0031698 // beta-2 adrenergic receptor binding // inferred from electronic annotation /// 0031698 // beta-2 adrenergic receptor binding // not recorded 1387794_at NM_031348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031348.1 /DB_XREF=gi:13786189 /GEN=Fcna /FEA=FLmRNA /CNT=12 /TID=Rn.20051.1 /TIER=FL+Stack /STK=8 /UG=Rn.20051 /LL=83517 /DEF=Rattus norvegicus ficolin A (Fcna), mRNA. /PROD=ficolin A /FL=gb:AB026057.2 gb:NM_031348.1 NM_031348 ficolin (collagen/fibrinogen domain containing) 1 Fcn1 83517 NM_031348 0007165 // signal transduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1387795_at NM_053480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053480.1 /DB_XREF=gi:16758233 /GEN=Pola2 /FEA=FLmRNA /CNT=12 /TID=Rn.31773.1 /TIER=FL+Stack /STK=8 /UG=Rn.31773 /LL=85242 /DEF=Rattus norvegicus DNA polymerase alpha subunit II (Pola2), mRNA. /PROD=DNA polymerase alpha subunit II /FL=gb:NM_053480.1 NM_053480 polymerase (DNA directed), alpha 2 Pola2 85242 NM_053480 0000060 // protein import into nucleus, translocation // inferred from electronic annotation /// 0000060 // protein import into nucleus, translocation // not recorded /// 0006260 // DNA replication // inferred from mutant phenotype /// 0006260 // DNA replication // not recorded /// 0006260 // DNA replication // traceable author statement /// 0006260 // DNA replication // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005658 // alpha DNA polymerase:primase complex // inferred by curator /// 0005658 // alpha DNA polymerase:primase complex // not recorded /// 0005658 // alpha DNA polymerase:primase complex // traceable author statement /// 0005658 // alpha DNA polymerase:primase complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inferred from mutant phenotype /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1387796_at NM_031010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031010.1 /DB_XREF=gi:13591911 /GEN=Alox12 /FEA=FLmRNA /CNT=11 /TID=Rn.11318.1 /TIER=FL+Stack /STK=8 /UG=Rn.11318 /LL=81639 /DEF=Rattus norvegicus arachidonate 12-lipoxygenase (Alox12), mRNA. /PROD=arachidonate 12-lipoxygenase /FL=gb:L06040.1 gb:NM_031010.1 NM_031010 arachidonate 15-lipoxygenase Alox15 81639 NM_031010 0001503 // ossification // not recorded /// 0001503 // ossification // inferred from electronic annotation /// 0006691 // leukotriene metabolic process // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0019369 // arachidonic acid metabolic process // inferred from direct assay /// 0019369 // arachidonic acid metabolic process // non-traceable author statement /// 0019370 // leukotriene biosynthetic process // inferred from electronic annotation /// 0019372 // lipoxygenase pathway // inferred from direct assay /// 0019395 // fatty acid oxidation // inferred from sequence or structural similarity /// 0030282 // bone mineralization // inferred from electronic annotation /// 0030282 // bone mineralization // not recorded /// 0030307 // positive regulation of cell growth // inferred from sequence or structural similarity /// 0042391 // regulation of membrane potential // traceable author statement /// 0045794 // negative regulation of cell volume // traceable author statement /// 0046456 // icosanoid biosynthetic process // non-traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0042383 // sarcolemma // inferred from sequence or structural similarity 0004052 // arachidonate 12-lipoxygenase activity // inferred from direct assay /// 0004052 // arachidonate 12-lipoxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016165 // lipoxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0019870 // potassium channel inhibitor activity // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047977 // hepoxilin-epoxide hydrolase activity // inferred from direct assay /// 0050473 // arachidonate 15-lipoxygenase activity // inferred from direct assay 1387797_at AA946057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946057 /DB_XREF=gi:4132679 /DB_XREF=EST201556 /CLONE=RLUBA69 /FEA=FLmRNA /CNT=48 /TID=Rn.1425.1 /TIER=Stack /STK=11 /UG=Rn.1425 /LL=29448 /UG_GENE=Rab7 /UG_TITLE=RAB7, member RAS oncogene family /FL=gb:AF286535.1 gb:NM_023950.1 AA946057 RAB7A, member RAS oncogene family Rab7a 29448 NM_023950 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0045453 // bone resorption // inferred from mutant phenotype 0005737 // cytoplasm // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005770 // late endosome // traceable author statement /// 0005770 // late endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0045335 // phagocytic vesicle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1387798_a_at D42115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D42115.1 /DB_XREF=gi:2463608 /FEA=FLmRNA /CNT=19 /TID=Rn.5825.1 /TIER=FL+Stack /STK=7 /UG=Rn.5825 /LL=54243 /UG_GENE=Cr1 /DEF=Rattus norvegicus mRNA for 5I2 antigen, clone 5, complete cds. /PROD=5I2 antigen /FL=gb:D42115.1 gb:NM_019301.1 gb:L36532.1 D42115 complement component (3b/4b) receptor 1-like Cr1l 54243 NM_001005265 /// NM_001005330 /// NM_019301 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from electronic annotation /// 0030449 // regulation of complement activation // not recorded /// 0030449 // regulation of complement activation // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation /// 0045916 // negative regulation of complement activation // inferred from mutant phenotype /// 0045916 // negative regulation of complement activation // not recorded /// 0045916 // negative regulation of complement activation // inferred from electronic annotation 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1387799_at AF129400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF129400.1 /DB_XREF=gi:4894773 /FEA=FLmRNA /CNT=20 /TID=Rn.6700.1 /TIER=FL+Stack /STK=7 /UG=Rn.6700 /LL=29639 /UG_GENE=Fxyd2 /DEF=Rattus norvegicus sodiumpotassium-transporting ATPase gamma chain mRNA, complete cds. /PROD=sodiumpotassium-transporting ATPase gammachain /FL=gb:NM_017349.1 gb:AF233060.1 gb:AF129400.1 AF129400 FXYD domain-containing ion transport regulator 2 Fxyd2 29639 NM_017349 /// NM_145717 0001558 // regulation of cell growth // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from mutant phenotype /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from mutant phenotype /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from mutant phenotype 0005792 // microsome // inferred from direct assay /// 0005890 // sodium:potassium-exchanging ATPase complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005391 // sodium:potassium-exchanging ATPase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction 1387800_at NM_080891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080891.1 /DB_XREF=gi:18266689 /GEN=Daxx /FEA=FLmRNA /CNT=14 /TID=Rn.870.1 /TIER=FL+Stack /STK=7 /UG=Rn.870 /DEF=Rattus norvegicus Fas death domain-associated protein (Daxx), mRNA. /PROD=Fas death domain-associated protein /FL=gb:AB064671.1 gb:NM_080891.1 NM_080891 death-domain associated protein Daxx 140926 NM_080891 0000281 // cytokinesis after mitosis // inferred from electronic annotation /// 0000281 // cytokinesis after mitosis // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // not recorded /// 0031396 // regulation of protein ubiquitination // not recorded /// 0031396 // regulation of protein ubiquitination // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0000792 // heterochromatin // inferred from electronic annotation /// 0000792 // heterochromatin // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005938 // cell cortex // inferred from direct assay /// 0016605 // PML body // inferred from electronic annotation /// 0016605 // PML body // not recorded /// 0016605 // PML body // inferred from sequence or structural similarity /// 0043005 // neuron projection // inferred from direct assay /// 0044297 // cell body // inferred from direct assay 0002039 // p53 binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0019899 // enzyme binding // not recorded /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded /// 0050681 // androgen receptor binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // not recorded 1387801_at NM_133589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133589.1 /DB_XREF=gi:19424287 /GEN=LOC171121 /FEA=FLmRNA /CNT=15 /TID=Rn.9573.1 /TIER=FL+Stack /STK=7 /UG=Rn.9573 /LL=171121 /DEF=Rattus norvegicus protein phosphatase V (LOC171121), mRNA. /PROD=protein phosphatase V /FL=gb:NM_133589.1 NM_133589 protein phosphatase 6, catalytic subunit Ppp6c 171121 NM_133589 0006470 // protein dephosphorylation // inferred from mutant phenotype /// 0006470 // protein dephosphorylation // not recorded /// 0007049 // cell cycle // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from mutant phenotype /// 0004722 // protein serine/threonine phosphatase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387802_at NM_022946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022946.2 /DB_XREF=gi:19923688 /GEN=Dlgap1 /FEA=FLmRNA /CNT=15 /TID=Rn.37481.1 /TIER=FL+Stack /STK=7 /UG=Rn.37481 /LL=65040 /DEF=Rattus norvegicus guanylate kinase associated protein (Dlgap1), mRNA. /PROD=guanylate kinase associated protein /FL=gb:U67137.1 gb:NM_022946.2 NM_022946 discs, large (Drosophila) homolog-associated protein 1 Dlgap1 65040 NM_022946 0007267 // cell-cell signaling // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from direct assay 1387803_at NM_022209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022209.1 /DB_XREF=gi:11559985 /GEN=LOC60660 /FEA=FLmRNA /CNT=16 /TID=Rn.44437.1 /TIER=FL+Stack /STK=7 /UG=Rn.44437 /LL=60660 /DEF=Rattus norvegicus BRbeta B-regulatory subunit of protein phosphatase 2A (LOC60660), mRNA. /PROD=BRbeta B-regulatory subunit of proteinphosphatase 2A /FL=gb:D38260.1 gb:NM_022209.1 NM_022209 protein phosphatase 2 (formerly 2A), regulatory subunit B, beta isoform Ppp2r2b 60660 NM_022209 0000266 // mitochondrial fission // inferred from direct assay /// 0006626 // protein targeting to mitochondrion // inferred from mutant phenotype /// 0006915 // apoptosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007286 // spermatid development // inferred from expression pattern /// 0007420 // brain development // inferred from expression pattern /// 0010637 // negative regulation of mitochondrial fusion // inferred from mutant phenotype /// 0030182 // neuron differentiation // inferred from expression pattern /// 0033554 // cellular response to stress // inferred from expression pattern /// 0034047 // regulation of protein phosphatase type 2A activity // inferred from direct assay /// 0043525 // positive regulation of neuron apoptosis // inferred from direct assay 0000159 // protein phosphatase type 2A complex // inferred from direct assay /// 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005856 // cytoskeleton // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008601 // protein phosphatase type 2A regulator activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay 1387804_at NM_080903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080903.1 /DB_XREF=gi:18266713 /GEN=Rnf28 /FEA=FLmRNA /CNT=9 /TID=Rn.40636.1 /TIER=FL+Stack /STK=7 /UG=Rn.40636 /DEF=Rattus norvegicus ring finger protein 28 (Rnf28), mRNA. /PROD=ring finger protein 28 /FL=gb:AY059627.1 gb:NM_080903.1 NM_080903 tripartite motif-containing 63 Trim63 140939 NM_080903 0006936 // muscle contraction // inferred from direct assay /// 0016567 // protein ubiquitination // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0043292 // contractile fiber // inferred from direct assay 0004842 // ubiquitin-protein ligase activity // inferred from expression pattern /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0031432 // titin binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1387805_at NM_053420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053420.1 /DB_XREF=gi:16758159 /GEN=Bnip3 /FEA=FLmRNA /CNT=70 /TID=Rn.2060.1 /TIER=FL+Stack /STK=6 /UG=Rn.2060 /LL=84480 /DEF=Rattus norvegicus BCL2adenovirus E1B 19 kDa-interacting protein 3, nuclear gene for mitochondrial product (Bnip3), mRNA. /PROD=BCL2adenovirus E1B 19 kDa-interacting protein3, nuclear gene /FL=gb:AF243515.1 gb:NM_053420.1 NM_053420 BCL2/adenovirus E1B interacting protein 3 Bnip3 84480 NM_053420 0001666 // response to hypoxia // inferred from direct assay /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // inferred from sequence or structural similarity /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // inferred from electronic annotation /// 0006338 // chromatin remodeling // inferred from sequence or structural similarity /// 0006338 // chromatin remodeling // inferred from electronic annotation /// 0006800 // oxygen and reactive oxygen species metabolic process // inferred from sequence or structural similarity /// 0006800 // oxygen and reactive oxygen species metabolic process // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from sequence or structural similarity /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0008219 // cell death // inferred from direct assay /// 0008219 // cell death // inferred from sequence or structural similarity /// 0008634 // negative regulation of survival gene product expression // inferred from sequence or structural similarity /// 0008634 // negative regulation of survival gene product expression // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0045837 // negative regulation of membrane potential // inferred from sequence or structural similarity /// 0045837 // negative regulation of membrane potential // inferred from electronic annotation /// 0046902 // regulation of mitochondrial membrane permeability // inferred from sequence or structural similarity /// 0046902 // regulation of mitochondrial membrane permeability // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0051402 // neuron apoptosis // inferred from direct assay /// 0051607 // defense response to virus // inferred from sequence or structural similarity /// 0051607 // defense response to virus // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005635 // nuclear envelope // inferred from sequence or structural similarity /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005740 // mitochondrial envelope // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0031307 // integral to mitochondrial outer membrane // inferred from sequence or structural similarity /// 0031307 // integral to mitochondrial outer membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from sequence or structural similarity /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 1387806_at NM_134346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134346.1 /DB_XREF=gi:19705450 /GEN=Rap1b /FEA=FLmRNA /CNT=34 /TID=Rn.32522.1 /TIER=FL+Stack /STK=6 /UG=Rn.32522 /LL=171337 /DEF=Rattus norvegicus RAP1B, member of RAS oncogene family (Rap1b), mRNA. /PROD=RAP1B, member of RAS oncogene family /FL=gb:U07795.1 gb:NM_134346.1 NM_134346 RAP1B, member of RAS oncogene family Rap1b 171337 NM_134346 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0003924 // GTPase activity // traceable author statement /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0005525 // GTP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // not recorded /// 0019003 // GDP binding // inferred from sequence or structural similarity /// 0019003 // GDP binding // inferred from electronic annotation 1387807_at NM_031763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031763.1 /DB_XREF=gi:13929077 /GEN=Pafah1b1 /FEA=FLmRNA /CNT=22 /TID=Rn.5827.1 /TIER=FL+Stack /STK=6 /UG=Rn.5827 /LL=83572 /DEF=Rattus norvegicus platelet-activating factor acetylhydrolase beta subunit (PAF-AH beta) (Pafah1b1), mRNA. /PROD=platelet-activating factor acetylhydrolase betasubunit (PAF-AH beta) /FL=gb:AF016049.1 gb:NM_031763.1 NM_031763 platelet-activating factor acetylhydrolase, isoform 1b, subunit 1 Pafah1b1 83572 NM_031763 0000132 // establishment of mitotic spindle orientation // inferred from electronic annotation /// 0000132 // establishment of mitotic spindle orientation // not recorded /// 0000226 // microtubule cytoskeleton organization // not recorded /// 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0001675 // acrosome assembly // inferred from electronic annotation /// 0001675 // acrosome assembly // not recorded /// 0001764 // neuron migration // inferred from mutant phenotype /// 0001764 // neuron migration // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007017 // microtubule-based process // not recorded /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007097 // nuclear migration // inferred from mutant phenotype /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007405 // neuroblast proliferation // inferred from electronic annotation /// 0007405 // neuroblast proliferation // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0007611 // learning or memory // inferred from electronic annotation /// 0007611 // learning or memory // not recorded /// 0008090 // retrograde axon cargo transport // inferred from electronic annotation /// 0008090 // retrograde axon cargo transport // not recorded /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0010977 // negative regulation of neuron projection development // inferred from mutant phenotype /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0017145 // stem cell division // inferred from mutant phenotype /// 0019226 // transmission of nerve impulse // not recorded /// 0019226 // transmission of nerve impulse // inferred from electronic annotation /// 0021540 // corpus callosum morphogenesis // inferred from electronic annotation /// 0021540 // corpus callosum morphogenesis // not recorded /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0021819 // layer formation in cerebral cortex // inferred from electronic annotation /// 0021819 // layer formation in cerebral cortex // not recorded /// 0021895 // cerebral cortex neuron differentiation // inferred from mutant phenotype /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0021987 // cerebral cortex development // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031023 // microtubule organizing center organization // inferred from electronic annotation /// 0031023 // microtubule organizing center organization // not recorded /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032319 // regulation of Rho GTPase activity // not recorded /// 0045773 // positive regulation of axon extension // inferred from mutant phenotype /// 0045931 // positive regulation of mitotic cell cycle // inferred from mutant phenotype /// 0047496 // vesicle transport along microtubule // inferred from electronic annotation /// 0047496 // vesicle transport along microtubule // not recorded /// 0048854 // brain morphogenesis // inferred from electronic annotation /// 0048854 // brain morphogenesis // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0051081 // nuclear envelope disassembly // inferred from electronic annotation /// 0051081 // nuclear envelope disassembly // not recorded /// 0051301 // cell division // inferred from electronic annotation /// 0051660 // establishment of centrosome localization // inferred from mutant phenotype /// 0071445 // cellular response to protein stimulus // inferred from expression pattern 0000235 // astral microtubule // inferred from electronic annotation /// 0000235 // astral microtubule // not recorded /// 0000776 // kinetochore // inferred from electronic annotation /// 0000776 // kinetochore // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay /// 0005635 // nuclear envelope // not recorded /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005871 // kinesin complex // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // not recorded /// 0005875 // microtubule associated complex // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0015630 // microtubule cytoskeleton // not recorded /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030426 // growth cone // inferred from direct assay /// 0031252 // cell leading edge // inferred from electronic annotation /// 0031252 // cell leading edge // not recorded /// 0031512 // motile primary cilium // inferred from electronic annotation /// 0031512 // motile primary cilium // not recorded /// 0031513 // nonmotile primary cilium // not recorded /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0033267 // axon part // inferred from direct assay /// 0042598 // vesicular fraction // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0045502 // dynein binding // not recorded /// 0045502 // dynein binding // inferred from electronic annotation /// 0045505 // dynein intermediate chain binding // inferred from direct assay /// 0047179 // platelet-activating factor acetyltransferase activity // traceable author statement /// 0051219 // phosphoprotein binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // not recorded 1387808_at AF200684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF200684.1 /DB_XREF=gi:6319235 /FEA=FLmRNA /CNT=15 /TID=Rn.18058.1 /TIER=FL+Stack /STK=6 /UG=Rn.18058 /LL=83509 /UG_GENE=Slc7a7 /DEF=Rattus norvegicus amino acid transporter y+LAT1 mRNA, complete cds. /PROD=amino acid transporter y+LAT1 /FL=gb:AF200684.1 gb:NM_031341.1 gb:AB020520.1 AF200684 solute carrier family 7 (cationic amino acid transporter, y+ system), member 7 Slc7a7 83509 NM_031341 0006810 // transport // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation 1387809_at NM_053703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053703.1 /DB_XREF=gi:16758519 /GEN=Map2k6 /FEA=FLmRNA /CNT=12 /TID=Rn.17256.1 /TIER=FL+Stack /STK=6 /UG=Rn.17256 /LL=114495 /DEF=Rattus norvegicus mitogen-activated protein kinase kinase 6 (Map2k6), mRNA. /PROD=mitogen-activated protein kinase kinase 6 /FL=gb:NM_053703.1 gb:AF369384.1 NM_053703 mitogen-activated protein kinase kinase 6 Map2k6 114495 NM_053703 0000165 // MAPKKK cascade // not recorded /// 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0060048 // cardiac muscle contraction // inferred from electronic annotation /// 0060048 // cardiac muscle contraction // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1387810_at BF414210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414210 /DB_XREF=gi:11402199 /DB_XREF=UI-R-BJ2-bon-f-12-0-UI.s1 /CLONE=UI-R-BJ2-bon-f-12-0-UI /FEA=FLmRNA /CNT=28 /TID=Rn.23467.1 /TIER=Stack /STK=9 /UG=Rn.23467 /LL=117519 /UG_GENE=Keap1 /UG_TITLE=Kelch-like ECH-associated protein 1 /FL=gb:AF304364.1 gb:NM_057152.1 BF414210 Kelch-like ECH-associated protein 1 Keap1 117519 NM_057152 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045604 // regulation of epidermal cell differentiation // inferred from electronic annotation /// 0045604 // regulation of epidermal cell differentiation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded 1387811_at NM_134432 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134432.1 /DB_XREF=gi:19705569 /GEN=Agt /FEA=FLmRNA /CNT=14 /TID=Rn.6319.1 /TIER=FL+Stack /STK=6 /UG=Rn.6319 /DEF=Rattus norvegicus Angiotensinogen (Agt), mRNA. /PROD=angiotensinogen /FL=gb:NM_134432.1 NM_134432 angiotensinogen (serpin peptidase inhibitor, clade A, member 8) Agt 24179 NM_134432 0001543 // ovarian follicle rupture // inferred from electronic annotation /// 0001543 // ovarian follicle rupture // not recorded /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0001991 // regulation of systemic arterial blood pressure by circulatory renin-angiotensin // not recorded /// 0001991 // regulation of systemic arterial blood pressure by circulatory renin-angiotensin // inferred from electronic annotation /// 0001998 // angiotensin mediated vasoconstriction involved in regulation of systemic arterial blood pressure // inferred from electronic annotation /// 0001998 // angiotensin mediated vasoconstriction involved in regulation of systemic arterial blood pressure // not recorded /// 0001999 // renal response to blood flow involved in circulatory renin-angiotensin regulation of systemic arterial blood pressure // inferred from electronic annotation /// 0001999 // renal response to blood flow involved in circulatory renin-angiotensin regulation of systemic arterial blood pressure // not recorded /// 0002018 // renin-angiotensin regulation of aldosterone production // inferred from electronic annotation /// 0002018 // renin-angiotensin regulation of aldosterone production // not recorded /// 0002019 // regulation of renal output by angiotensin // inferred from electronic annotation /// 0002019 // regulation of renal output by angiotensin // not recorded /// 0002035 // brain renin-angiotensin system // inferred from electronic annotation /// 0002035 // brain renin-angiotensin system // not recorded /// 0006883 // cellular sodium ion homeostasis // inferred from mutant phenotype /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007202 // activation of phospholipase C activity // inferred from mutant phenotype /// 0007588 // excretion // not recorded /// 0007588 // excretion // inferred from electronic annotation /// 0008065 // establishment of blood-nerve barrier // inferred from electronic annotation /// 0008065 // establishment of blood-nerve barrier // not recorded /// 0008217 // regulation of blood pressure // inferred from expression pattern /// 0008217 // regulation of blood pressure // not recorded /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009409 // response to cold // inferred from electronic annotation /// 0009409 // response to cold // not recorded /// 0009651 // response to salt stress // inferred from electronic annotation /// 0009651 // response to salt stress // not recorded /// 0010595 // positive regulation of endothelial cell migration // inferred from electronic annotation /// 0010595 // positive regulation of endothelial cell migration // not recorded /// 0010613 // positive regulation of cardiac muscle hypertrophy // inferred from direct assay /// 0010873 // positive regulation of cholesterol esterification // inferred from electronic annotation /// 0010873 // positive regulation of cholesterol esterification // not recorded /// 0014061 // regulation of norepinephrine secretion // inferred from mutant phenotype /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0014873 // response to muscle activity involved in regulation of muscle adaptation // inferred from mutant phenotype /// 0030147 // natriuresis // inferred from direct assay /// 0030147 // natriuresis // inferred from mutant phenotype /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0030432 // peristalsis // inferred from electronic annotation /// 0030432 // peristalsis // not recorded /// 0032270 // positive regulation of cellular protein metabolic process // inferred from electronic annotation /// 0032270 // positive regulation of cellular protein metabolic process // not recorded /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0042310 // vasoconstriction // inferred from electronic annotation /// 0042445 // hormone metabolic process // inferred from electronic annotation /// 0042445 // hormone metabolic process // not recorded /// 0042756 // drinking behavior // inferred from electronic annotation /// 0042756 // drinking behavior // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043085 // positive regulation of catalytic activity // inferred from mutant phenotype /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045723 // positive regulation of fatty acid biosynthetic process // inferred from electronic annotation /// 0045723 // positive regulation of fatty acid biosynthetic process // not recorded /// 0045742 // positive regulation of epidermal growth factor receptor signaling pathway // inferred from electronic annotation /// 0045742 // positive regulation of epidermal growth factor receptor signaling pathway // not recorded /// 0046622 // positive regulation of organ growth // inferred from electronic annotation /// 0046622 // positive regulation of organ growth // not recorded /// 0048143 // astrocyte activation // inferred from electronic annotation /// 0048143 // astrocyte activation // not recorded /// 0048146 // positive regulation of fibroblast proliferation // inferred from direct assay /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from mutant phenotype /// 0048659 // smooth muscle cell proliferation // inferred from electronic annotation /// 0048659 // smooth muscle cell proliferation // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050880 // regulation of blood vessel size // inferred from electronic annotation /// 0051145 // smooth muscle cell differentiation // inferred from electronic annotation /// 0051145 // smooth muscle cell differentiation // not recorded /// 0051387 // negative regulation of nerve growth factor receptor signaling pathway // inferred from electronic annotation /// 0051387 // negative regulation of nerve growth factor receptor signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0044444 // cytoplasmic part // inferred from direct assay 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0004937 // alpha1-adrenergic receptor activity // traceable author statement /// 0005179 // hormone activity // inferred from direct assay /// 0010698 // acetyltransferase activator activity // inferred from electronic annotation /// 0010698 // acetyltransferase activator activity // not recorded /// 0031701 // angiotensin receptor binding // inferred from mutant phenotype /// 0031702 // type 1 angiotensin receptor binding // inferred from mutant phenotype /// 0031702 // type 1 angiotensin receptor binding // not recorded /// 0031702 // type 1 angiotensin receptor binding // inferred from electronic annotation /// 0031703 // type 2 angiotensin receptor binding // inferred from mutant phenotype /// 0031703 // type 2 angiotensin receptor binding // not recorded /// 0031703 // type 2 angiotensin receptor binding // inferred from electronic annotation 1387812_at NM_012999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012999.1 /DB_XREF=gi:6981327 /GEN=Pace4 /FEA=FLmRNA /CNT=12 /TID=Rn.950.1 /TIER=FL+Stack /STK=6 /UG=Rn.950 /LL=25507 /DEF=Rattus norvegicus Subtilisin - like endoprotease (Pace4), mRNA. /PROD=subtilisin - like endoprotease /FL=gb:L31894.1 gb:NM_012999.1 NM_012999 proprotein convertase subtilisin/kexin type 6 Pcsk6 25507 NM_012999 0006508 // proteolysis // inferred from electronic annotation /// 0007354 // zygotic determination of anterior/posterior axis, embryo // not recorded /// 0007368 // determination of left/right symmetry // not recorded /// 0009100 // glycoprotein metabolic process // not recorded /// 0016486 // peptide hormone processing // inferred from expression pattern /// 0016486 // peptide hormone processing // not recorded /// 0032455 // nerve growth factor processing // not recorded /// 0032902 // nerve growth factor production // not recorded /// 0032940 // secretion by cell // not recorded /// 0051605 // protein maturation by peptide bond cleavage // not recorded 0005615 // extracellular space // not recorded /// 0005625 // soluble fraction // not recorded /// 0005796 // Golgi lumen // not recorded /// 0009986 // cell surface // not recorded /// 0031012 // extracellular matrix // not recorded 0004175 // endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // not recorded /// 0008201 // heparin binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0043499 // eukaryotic cell surface binding // not recorded /// 0048406 // nerve growth factor binding // not recorded 1387813_at NM_017003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017003.1 /DB_XREF=gi:8393324 /GEN=Erbb2 /FEA=FLmRNA /CNT=14 /TID=Rn.10380.1 /TIER=FL+Stack /STK=6 /UG=Rn.10380 /LL=24337 /DEF=Rattus norvegicus Avian erythroblastosis viral (v-erb-B2) oncogene homologue 2 (neuroglioblastoma derived oncogene homolog) (Erbb2), mRNA. /PROD=avian erythroblastosis viral (v-erb-B2) oncogenehomologue 2 (neuroglioblastoma derived oncogene homolog) /FL=gb:NM_017003.1 NM_017003 v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) Erbb2 24337 NM_017003 0001889 // liver development // inferred from expression pattern /// 0006350 // transcription // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // traceable author statement /// 0007422 // peripheral nervous system development // inferred from mutant phenotype /// 0007422 // peripheral nervous system development // not recorded /// 0007422 // peripheral nervous system development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from expression pattern /// 0007528 // neuromuscular junction development // not recorded /// 0007528 // neuromuscular junction development // inferred from electronic annotation /// 0008045 // motor axon guidance // not recorded /// 0008045 // motor axon guidance // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0010001 // glial cell differentiation // inferred from genetic interaction /// 0014065 // phosphoinositide 3-kinase cascade // not recorded /// 0014065 // phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // inferred from mutant phenotype /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0033088 // negative regulation of immature T cell proliferation in thymus // not recorded /// 0033088 // negative regulation of immature T cell proliferation in thymus // inferred from electronic annotation /// 0042060 // wound healing // not recorded /// 0042060 // wound healing // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // traceable author statement /// 0042493 // response to drug // inferred from expression pattern /// 0042552 // myelination // not recorded /// 0042552 // myelination // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0043406 // positive regulation of MAP kinase activity // not recorded /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // inferred from mutant phenotype /// 0043586 // tongue development // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // traceable author statement /// 0045785 // positive regulation of cell adhesion // not recorded /// 0045785 // positive regulation of cell adhesion // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0048485 // sympathetic nervous system development // inferred from mutant phenotype /// 0048678 // response to axon injury // inferred from direct assay /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0060056 // mammary gland involution // inferred from expression pattern /// 0060209 // estrus // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005902 // microvillus // inferred from direct assay /// 0009925 // basal plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0043219 // lateral loop // inferred from direct assay /// 0043235 // receptor complex // not recorded /// 0043235 // receptor complex // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // inferred from physical interaction /// 0003677 // DNA binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // not recorded /// 0004716 // receptor signaling protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // not recorded /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded /// 0019838 // growth factor binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // not recorded /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0051879 // Hsp90 protein binding // inferred from physical interaction 1387814_at NM_019155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019155.1 /DB_XREF=gi:9506464 /GEN=Cav3 /FEA=FLmRNA /CNT=11 /TID=Rn.55046.1 /TIER=FL+Stack /STK=6 /UG=Rn.55046 /LL=29161 /DEF=Rattus norvegicus caveolin 3 (Cav3), mRNA. /PROD=caveolin 3 /FL=gb:NM_019155.1 gb:U31968.1 NM_019155 caveolin 3 Cav3 29161 NM_019155 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // not recorded /// 0006897 // endocytosis // not recorded /// 0007009 // plasma membrane organization // inferred from electronic annotation /// 0007009 // plasma membrane organization // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0008016 // regulation of heart contraction // inferred from mutant phenotype /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0010614 // negative regulation of cardiac muscle hypertrophy // inferred from electronic annotation /// 0010614 // negative regulation of cardiac muscle hypertrophy // not recorded /// 0014819 // regulation of skeletal muscle contraction // inferred from electronic annotation /// 0014819 // regulation of skeletal muscle contraction // not recorded /// 0016049 // cell growth // inferred from expression pattern /// 0030154 // cell differentiation // inferred from expression pattern /// 0031116 // positive regulation of microtubule polymerization // inferred from mutant phenotype /// 0031579 // membrane raft organization // inferred from electronic annotation /// 0031579 // membrane raft organization // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042593 // glucose homeostasis // not recorded /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0043407 // negative regulation of MAP kinase activity // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // not recorded /// 0043409 // negative regulation of MAPKKK cascade // inferred from electronic annotation /// 0043409 // negative regulation of MAPKKK cascade // not recorded /// 0045792 // negative regulation of cell size // inferred from electronic annotation /// 0045792 // negative regulation of cell size // not recorded /// 0046716 // muscle cell homeostasis // inferred from electronic annotation /// 0046716 // muscle cell homeostasis // not recorded /// 0051001 // negative regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051001 // negative regulation of nitric-oxide synthase activity // not recorded /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // inferred from electronic annotation /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0055117 // regulation of cardiac muscle contraction // not recorded /// 0055117 // regulation of cardiac muscle contraction // inferred from electronic annotation /// 0060299 // negative regulation of sarcomere organization // inferred from electronic annotation /// 0060299 // negative regulation of sarcomere organization // not recorded /// 0060307 // regulation of ventricular cardiomyocyte membrane repolarization // inferred from electronic annotation /// 0060307 // regulation of ventricular cardiomyocyte membrane repolarization // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0005901 // caveola // not recorded /// 0005901 // caveola // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016010 // dystrophin-associated glycoprotein complex // inferred from electronic annotation /// 0016010 // dystrophin-associated glycoprotein complex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0030018 // Z disc // inferred from direct assay /// 0030315 // T-tubule // inferred from direct assay /// 0030315 // T-tubule // not recorded /// 0030315 // T-tubule // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from direct assay /// 0042383 // sarcolemma // inferred from direct assay /// 0042383 // sarcolemma // not recorded /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042598 // vesicular fraction // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0044424 // intracellular part // inferred from direct assay /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0017080 // sodium channel regulator activity // inferred from electronic annotation /// 0017080 // sodium channel regulator activity // not recorded /// 0019899 // enzyme binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from electronic annotation /// 0032403 // protein complex binding // not recorded /// 0032947 // protein complex scaffold // inferred from direct assay 1387815_at NM_019129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019129.1 /DB_XREF=gi:9506814 /GEN=Ins1 /FEA=FLmRNA /CNT=37 /TID=Rn.962.1 /TIER=FL+Stack /STK=6 /UG=Rn.962 /LL=24505 /DEF=Rattus norvegicus Insulin (Ins1), mRNA. /PROD=insulin /FL=gb:NM_019129.1 NM_019129 insulin 1 Ins1 24505 NM_019129 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0005158 // insulin receptor binding // inferred from direct assay /// 0005179 // hormone activity // inferred from electronic annotation /// 0051087 // chaperone binding // inferred from physical interaction 1387816_at NM_053329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053329.1 /DB_XREF=gi:16758033 /GEN=Igfals /FEA=FLmRNA /CNT=12 /TID=Rn.7327.1 /TIER=FL /STK=5 /UG=Rn.7327 /LL=79438 /DEF=Rattus norvegicus insulin-like growth factor binding protein, acid labile subunit (Igfals), mRNA. /PROD=insulin-like growth factor binding protein, acidlabile subunit /FL=gb:NM_053329.1 NM_053329 insulin-like growth factor binding protein, acid labile subunit Igfals 79438 NM_053329 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0042567 // insulin-like growth factor ternary complex // inferred from direct assay /// 0042567 // insulin-like growth factor ternary complex // inferred from mutant phenotype 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005520 // insulin-like growth factor binding // inferred from direct assay /// 0008022 // protein C-terminus binding // inferred from physical interaction 1387817_at NM_024128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024128.1 /DB_XREF=gi:13162299 /GEN=Bsmrb /FEA=FLmRNA /CNT=27 /TID=Rn.2865.1 /TIER=FL /STK=4 /UG=Rn.2865 /LL=25247 /DEF=Rattus norvegicus Brain specific mRNA B (clone p1a75) (Bsmrb), mRNA. /PROD=brain specific mRNA B (clone p1a75) /FL=gb:NM_024128.1 NM_024128 neuron specific gene family member 1 Nsg1 25247 NM_024128 0007212 // dopamine receptor signaling pathway // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0050780 // dopamine receptor binding // inferred from electronic annotation 1387818_at NM_053736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053736.1 /DB_XREF=gi:16758555 /GEN=Casp11 /FEA=FLmRNA /CNT=9 /TID=Rn.16195.1 /TIER=FL /STK=4 /UG=Rn.16195 /LL=114555 /DEF=Rattus norvegicus caspase 11 (Casp11), mRNA. /PROD=caspase 11 /FL=gb:NM_053736.1 gb:AY029283.1 NM_053736 caspase 4, apoptosis-related cysteine peptidase Casp4 114555 NM_053736 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptosis // traceable author statement /// 0006915 // apoptosis // inferred from electronic annotation /// 0006919 // activation of caspase activity // traceable author statement /// 0006954 // inflammatory response // traceable author statement /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded 0005622 // intracellular // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387819_at NM_012552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012552.1 /DB_XREF=gi:6978800 /GEN=Ela1 /FEA=FLmRNA /CNT=7 /TID=Rn.6044.1 /TIER=FL /STK=3 /UG=Rn.6044 /LL=24331 /DEF=Rattus norvegicus Elastase 1 (Ela1), mRNA. /PROD=elastase 1 /FL=gb:NM_012552.1 NM_012552 chymotrypsin-like elastase family, member 1 Cela1 24331 NM_012552 0006508 // proteolysis // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0009791 // post-embryonic development // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0031017 // exocrine pancreas development // not recorded /// 0035264 // multicellular organism growth // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0045595 // regulation of cell differentiation // not recorded /// 0055123 // digestive system development // not recorded /// 0061113 // pancreas morphogenesis // not recorded 0005576 // extracellular region // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387820_at NM_012593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012593.1 /DB_XREF=gi:6981131 /GEN=Klk1 /FEA=FLmRNA /CNT=5 /TID=Rn.34526.1 /TIER=FL /STK=3 /UG=Rn.34526 /LL=24523 /DEF=Rattus norvegicus Kallikrein 1, renalpancreassalivary (Klk1), mRNA. /PROD=kallikrein 1, renalpancreassalivary /FL=gb:NM_012593.1 NM_012593 kallikrein 1-like peptidase Klk1l 24523 NM_012593 0006508 // proteolysis // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387821_at NM_017313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017313.1 /DB_XREF=gi:8394138 /GEN=RABIN3 /FEA=FLmRNA /CNT=8 /TID=Rn.31889.1 /TIER=FL /STK=2 /UG=Rn.31889 /LL=29885 /DEF=Rattus norvegicus rabin 3 (RABIN3), mRNA. /PROD=rabin 3 /FL=gb:U19181.1 gb:NM_017313.1 NM_017313 RAB3A interacting protein (rabin3) Rab3ip 29885 NM_017313 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0033365 // protein localization in organelle // inferred from electronic annotation /// 0033365 // protein localization in organelle // not recorded /// 0042384 // cilium assembly // inferred from electronic annotation /// 0042384 // cilium assembly // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0051020 // GTPase binding // inferred from physical interaction 1387822_at NM_031033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031033.1 /DB_XREF=gi:13591950 /GEN=Gna11 /FEA=FLmRNA /CNT=5 /TID=Rn.21925.1 /TIER=FL /STK=2 /UG=Rn.21925 /LL=81662 /DEF=Rattus norvegicus guanine nucleotide-binding protein alpha 11 subunit (Gna11), mRNA. /PROD=guanine nucleotide-binding protein alpha 11subunit /FL=gb:AF239674.1 gb:NM_031033.1 NM_031033 guanine nucleotide binding protein, alpha 11 Gna11 81662 NM_031033 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001508 // regulation of action potential // inferred from electronic annotation /// 0001508 // regulation of action potential // not recorded /// 0006471 // protein ADP-ribosylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007215 // glutamate signaling pathway // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0045634 // regulation of melanocyte differentiation // inferred from electronic annotation /// 0045634 // regulation of melanocyte differentiation // not recorded /// 0048066 // developmental pigmentation // inferred from electronic annotation /// 0048066 // developmental pigmentation // not recorded /// 0060158 // activation of phospholipase C activity by dopamine receptor signaling pathway // inferred from electronic annotation /// 0060158 // activation of phospholipase C activity by dopamine receptor signaling pathway // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // traceable author statement /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1387823_at NM_021757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021757.1 /DB_XREF=gi:11120705 /GEN=Plrg1 /FEA=FLmRNA /CNT=14 /TID=Rn.44181.1 /TIER=FL /STK=1 /UG=Rn.44181 /LL=60376 /DEF=Rattus norvegicus pleiotropic regulator 1 (Plrg1), mRNA. /PROD=pleiotropic regulator 1 /FL=gb:NM_021757.1 gb:AF128241.1 NM_021757 pleiotropic regulator 1, PRL1 homolog (Arabidopsis) Plrg1 60376 NM_021757 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387824_at NM_020092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020092.1 /DB_XREF=gi:9910563 /GEN=Srrp86 /FEA=FLmRNA /CNT=11 /TID=Rn.53896.1 /TIER=FL /STK=1 /UG=Rn.53896 /LL=56763 /DEF=Rattus norvegicus serine-arginine-rich splicing regulatory protein 86 (Srrp86), mRNA. /PROD=serine-arginine-rich splicing regulatory protein86 /FL=gb:NM_020092.1 gb:AF234765.1 NM_020092 splicing factor, arginine/serine-rich 12 Sfrs12 56763 NM_020092 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387825_at NM_031533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031533.1 /DB_XREF=gi:13928717 /GEN=Ugt2b2 /FEA=FLmRNA /CNT=10 /TID=Rn.2521.1 /TIER=FL /STK=1 /UG=Rn.2521 /LL=24862 /DEF=Rattus norvegicus Androsterone UDP-glucuronosyltransferase (Ugt2b2), mRNA. /PROD=androsterone UDP-glucuronosyltransferase /FL=gb:NM_031533.1 NM_031533 UDP glycosyltransferase 2 family, polypeptide B Ugt2b 24862 NM_031533 0008152 // metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0015020 // glucuronosyltransferase activity // inferred from direct assay /// 0015020 // glucuronosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1387826_at NM_031769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031769.1 /DB_XREF=gi:13929081 /GEN=Pdxk /FEA=FLmRNA /CNT=8 /TID=Rn.18815.1 /TIER=FL /STK=1 /UG=Rn.18815 /LL=83578 /DEF=Rattus norvegicus pyridoxal kinase (Pdxk), mRNA. /PROD=pyridoxal kinase /FL=gb:NM_031769.1 gb:AF020346.1 NM_031769 similar to pyridoxal (pyridoxine, vitamin B6) kinase RGD1566085 361819 XM_001079270 /// XM_342112 0008615 // pyridoxine biosynthetic process // inferred from electronic annotation 0008478 // pyridoxal kinase activity // inferred from electronic annotation 1387827_x_at NM_022647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022647.1 /DB_XREF=gi:12025525 /GEN=H2b /FEA=FLmRNA /CNT=6 /TID=Rn.11690.1 /TIER=FL /STK=1 /UG=Rn.11690 /LL=64647 /DEF=Rattus norvegicus histone 2b (H2b), mRNA. /PROD=histone 2b /FL=gb:NM_022647.1 NM_022647 histone cluster 1, H2bf Hist1h2bf 306969 XM_001061682 /// XM_225384 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387828_at NM_023026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023026.1 /DB_XREF=gi:12711697 /GEN=Pike /FEA=FLmRNA /CNT=5 /TID=Rn.39061.1 /TIER=FL /STK=1 /UG=Rn.39061 /LL=65218 /DEF=Rattus norvegicus nuclear GTPase PIKE (Pike), mRNA. /PROD=nuclear GTPase PIKE /FL=gb:NM_023026.1 gb:AF280816.1 NM_023026 ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 Agap2 65218 NM_023026 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from direct assay /// 0030295 // protein kinase activator activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1387829_at NM_020090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_020090.1 /DB_XREF=gi:9910551 /GEN=Slc24a1 /FEA=FLmRNA /CNT=5 /TID=Rn.48143.1 /TIER=FL /STK=1 /UG=Rn.48143 /LL=56814 /DEF=Rattus norvegicus sodiumcalciumpotassium exchanger (Slc24a1), mRNA. /PROD=sodiumcalciumpotassium exchanger /FL=gb:NM_020090.1 gb:AF176688.1 NM_020090 solute carrier family 24 (sodium/potassium/calcium exchanger), member 1 Slc24a1 56814 NM_020090 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0007601 // visual perception // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008273 // calcium, potassium:sodium antiporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation 1387830_at NM_017096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017096.1 /DB_XREF=gi:8393196 /GEN=Crp /FEA=FLmRNA /CNT=4 /TID=Rn.16463.1 /TIER=FL /STK=1 /UG=Rn.16463 /LL=25419 /DEF=Rattus norvegicus C-reactive protein (Crp), mRNA. /PROD=c-reactive protein, member of the pentraxinfamily /FL=gb:NM_017096.1 gb:M83176.1 NM_017096 C-reactive protein, pentraxin-related Crp 25419 NM_017096 0006953 // acute-phase response // inferred from electronic annotation /// 0006958 // complement activation, classical pathway // inferred from mutant phenotype /// 0010745 // negative regulation of macrophage derived foam cell differentiation // inferred from electronic annotation /// 0010745 // negative regulation of macrophage derived foam cell differentiation // not recorded /// 0010888 // negative regulation of lipid storage // inferred from electronic annotation /// 0010888 // negative regulation of lipid storage // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015485 // cholesterol binding // inferred from direct assay /// 0030169 // low-density lipoprotein binding // inferred from electronic annotation /// 0030169 // low-density lipoprotein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1387831_at NM_134361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134361.1 /DB_XREF=gi:19705460 /GEN=Scyc1 /FEA=FLmRNA /CNT=4 /TID=Rn.25484.1 /TIER=FL /STK=1 /UG=Rn.25484 /LL=171371 /DEF=Rattus norvegicus small inducible cytokine subfamily C, member 1 (lymphotactin) (Scyc1), mRNA. /PROD=small inducible cytokine subfamily C, member 1(lymphotactin) /FL=gb:NM_134361.1 gb:U23377.1 NM_134361 chemokine (C motif) ligand 1 Xcl1 171371 NM_134361 0006935 // chemotaxis // inferred from electronic annotation /// 0006935 // chemotaxis // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0051209 // release of sequestered calcium ion into cytosol // inferred from electronic annotation /// 0051209 // release of sequestered calcium ion into cytosol // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // traceable author statement 1387832_at NM_022942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022942.1 /DB_XREF=gi:12621109 /GEN=Bche /FEA=FLmRNA /CNT=4 /TID=Rn.48791.1 /TIER=FL /STK=1 /UG=Rn.48791 /LL=65036 /DEF=Rattus norvegicus butyrylcholinesterase (Bche), mRNA. /PROD=butyrylcholinesterase /FL=gb:NM_022942.1 gb:AF244349.1 NM_022942 butyrylcholinesterase Bche 65036 NM_022942 0007584 // response to nutrient // inferred from direct assay /// 0007612 // learning // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0019695 // choline metabolic process // inferred from direct assay /// 0042493 // response to drug // inferred from direct assay /// 0043279 // response to alkaloid // inferred from direct assay /// 0050805 // negative regulation of synaptic transmission // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from direct assay /// 0051593 // response to folic acid // inferred from direct assay 0005615 // extracellular space // inferred from direct assay /// 0005624 // membrane fraction // inferred from direct assay /// 0005641 // nuclear envelope lumen // inferred from electronic annotation /// 0005641 // nuclear envelope lumen // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0003990 // acetylcholinesterase activity // inferred from electronic annotation /// 0003990 // acetylcholinesterase activity // not recorded /// 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0004104 // cholinesterase activity // inferred from direct assay /// 0004104 // cholinesterase activity // not recorded /// 0004104 // cholinesterase activity // non-traceable author statement /// 0004104 // cholinesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0033265 // choline binding // inferred from direct assay 1387833_at NM_130424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130424.1 /DB_XREF=gi:18496986 /GEN=Tmprss2 /FEA=FLmRNA /CNT=3 /TID=Rn.81082.1 /TIER=FL /STK=1 /UG=Rn.81082 /DEF=Rattus norvegicus transmembrane protease, serine 2 (Tmprss2), mRNA. /PROD=transmembrane protease, serine 2 /FL=gb:NM_130424.1 gb:AB073550.1 NM_130424 transmembrane protease, serine 2 Tmprss2 156435 NM_130424 0006508 // proteolysis // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387834_at NM_021859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021859.1 /DB_XREF=gi:11177903 /GEN=Matk /FEA=FLmRNA /CNT=3 /TID=Rn.44303.1 /TIER=FL /STK=1 /UG=Rn.44303 /LL=60450 /DEF=Rattus norvegicus megakaryocyte-associated tyrosine kinase (Matk), mRNA. /PROD=non-receptor protein kinase protein /FL=gb:NM_021859.1 NM_021859 megakaryocyte-associated tyrosine kinase Matk 60450 NM_021859 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387835_at NM_022194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022194.1 /DB_XREF=gi:11559963 /GEN=Il1rn /FEA=FLmRNA /CNT=3 /TID=Rn.44376.1 /TIER=FL /STK=1 /UG=Rn.44376 /LL=60582 /DEF=Rattus norvegicus interleukin 1 receptor antagonist gene (Il1rn), mRNA. /PROD=interleukin 1 receptor antagonist gene /FL=gb:NM_022194.1 NM_022194 interleukin 1 receptor antagonist Il1rn 60582 NM_022194 0001660 // fever // inferred from mutant phenotype /// 0002439 // chronic inflammatory response to antigenic stimulus // inferred from expression pattern /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // not recorded /// 0006954 // inflammatory response // not recorded /// 0007565 // female pregnancy // inferred from expression pattern /// 0007613 // memory // inferred from mutant phenotype /// 0009968 // negative regulation of signal transduction // traceable author statement /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014050 // negative regulation of glutamate secretion // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030073 // insulin secretion // inferred from electronic annotation /// 0030073 // insulin secretion // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0043507 // positive regulation of JUN kinase activity // inferred from mutant phenotype /// 0051384 // response to glucocorticoid stimulus // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // not recorded /// 0031982 // vesicle // inferred from electronic annotation /// 0031982 // vesicle // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005150 // interleukin-1, Type I receptor binding // traceable author statement /// 0005152 // interleukin-1 receptor antagonist activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387836_at NM_031692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031692.1 /DB_XREF=gi:13928961 /GEN=Ykt6-pending /FEA=FLmRNA /CNT=17 /TID=Rn.11358.1 /TIER=FL /STK=0 /UG=Rn.11358 /LL=64351 /DEF=Rattus norvegicus prenylated SNARE protein (Ykt6-pending), mRNA. /PROD=SNARE protein Ykt6 /FL=gb:AF033027.1 gb:NM_031692.1 NM_031692 YKT6 v-SNARE homolog (S. cerevisiae) Ykt6 64351 NM_031692 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // not recorded /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from sequence or structural similarity /// 0006903 // vesicle targeting // not recorded /// 0006903 // vesicle targeting // inferred from sequence or structural similarity /// 0006904 // vesicle docking involved in exocytosis // not recorded /// 0006904 // vesicle docking involved in exocytosis // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031201 // SNARE complex // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005484 // SNAP receptor activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0019706 // protein-cysteine S-palmitoleyltransferase activity // not recorded /// 0019706 // protein-cysteine S-palmitoleyltransferase activity // inferred from sequence or structural similarity 1387837_at NM_012499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012499.1 /DB_XREF=gi:6978508 /GEN=Apc /FEA=FLmRNA /CNT=16 /TID=Rn.11351.1 /TIER=FL /STK=0 /UG=Rn.11351 /LL=24205 /DEF=Rattus norvegicus Adenomatosis polyposis coli (Apc), mRNA. /PROD=adenomatosis polyposis coli /FL=gb:D38629.1 gb:NM_012499.1 NM_012499 adenomatous polyposis coli Apc 24205 NM_012499 0000281 // cytokinesis after mitosis // inferred from electronic annotation /// 0000281 // cytokinesis after mitosis // not recorded /// 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0001942 // hair follicle development // inferred from electronic annotation /// 0001942 // hair follicle development // not recorded /// 0006461 // protein complex assembly // not recorded /// 0006461 // protein complex assembly // inferred from sequence or structural similarity /// 0006461 // protein complex assembly // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from sequence or structural similarity /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007026 // negative regulation of microtubule depolymerization // not recorded /// 0007026 // negative regulation of microtubule depolymerization // inferred from sequence or structural similarity /// 0007026 // negative regulation of microtubule depolymerization // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0007050 // cell cycle arrest // inferred from sequence or structural similarity /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007091 // mitotic metaphase/anaphase transition // inferred from electronic annotation /// 0007091 // mitotic metaphase/anaphase transition // not recorded /// 0007094 // mitotic cell cycle spindle assembly checkpoint // inferred from electronic annotation /// 0007094 // mitotic cell cycle spindle assembly checkpoint // not recorded /// 0007163 // establishment or maintenance of cell polarity // inferred from direct assay /// 0007389 // pattern specification process // not recorded /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009798 // axis specification // inferred from electronic annotation /// 0009798 // axis specification // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0009954 // proximal/distal pattern formation // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // not recorded /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0019827 // stem cell maintenance // not recorded /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030334 // regulation of cell migration // not recorded /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0030856 // regulation of epithelial cell differentiation // not recorded /// 0030856 // regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030858 // positive regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030858 // positive regulation of epithelial cell differentiation // not recorded /// 0031016 // pancreas development // inferred from expression pattern /// 0031116 // positive regulation of microtubule polymerization // inferred from electronic annotation /// 0031116 // positive regulation of microtubule polymerization // not recorded /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0031274 // positive regulation of pseudopodium assembly // inferred from electronic annotation /// 0031274 // positive regulation of pseudopodium assembly // not recorded /// 0033077 // T cell differentiation in thymus // inferred from electronic annotation /// 0033077 // T cell differentiation in thymus // not recorded /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0035019 // somatic stem cell maintenance // not recorded /// 0042483 // negative regulation of odontogenesis // inferred from electronic annotation /// 0042483 // negative regulation of odontogenesis // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043409 // negative regulation of MAPKKK cascade // inferred from electronic annotation /// 0043409 // negative regulation of MAPKKK cascade // not recorded /// 0043588 // skin development // inferred from electronic annotation /// 0043588 // skin development // not recorded /// 0045595 // regulation of cell differentiation // not recorded /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // not recorded /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045667 // regulation of osteoblast differentiation // inferred from electronic annotation /// 0045667 // regulation of osteoblast differentiation // not recorded /// 0045670 // regulation of osteoclast differentiation // inferred from electronic annotation /// 0045670 // regulation of osteoclast differentiation // not recorded /// 0045732 // positive regulation of protein catabolic process // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // not recorded /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // not recorded /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // inferred from sequence or structural similarity /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // not recorded /// 0046716 // muscle cell homeostasis // inferred from electronic annotation /// 0046716 // muscle cell homeostasis // not recorded /// 0048538 // thymus development // inferred from electronic annotation /// 0048538 // thymus development // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0051171 // regulation of nitrogen compound metabolic process // inferred from electronic annotation /// 0051171 // regulation of nitrogen compound metabolic process // not recorded /// 0051276 // chromosome organization // inferred from electronic annotation /// 0051276 // chromosome organization // not recorded /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0051781 // positive regulation of cell division // not recorded /// 0051988 // regulation of attachment of spindle microtubules to kinetochore // inferred from electronic annotation /// 0051988 // regulation of attachment of spindle microtubules to kinetochore // not recorded /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060770 // negative regulation of epithelial cell proliferation involved in prostate gland development // inferred from electronic annotation /// 0060770 // negative regulation of epithelial cell proliferation involved in prostate gland development // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded 0000776 // kinetochore // not recorded /// 0000776 // kinetochore // inferred from sequence or structural similarity /// 0000776 // kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005813 // centrosome // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005874 // microtubule // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // not recorded /// 0005913 // cell-cell adherens junction // inferred from sequence or structural similarity /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0005923 // tight junction // not recorded /// 0016328 // lateral plasma membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030426 // growth cone // inferred from direct assay /// 0030426 // growth cone // not recorded /// 0030426 // growth cone // inferred from electronic annotation /// 0030877 // beta-catenin destruction complex // not recorded /// 0030877 // beta-catenin destruction complex // inferred from sequence or structural similarity /// 0030877 // beta-catenin destruction complex // inferred from electronic annotation /// 0031253 // cell projection membrane // inferred from electronic annotation /// 0031253 // cell projection membrane // not recorded /// 0033267 // axon part // inferred from electronic annotation /// 0033267 // axon part // not recorded /// 0034747 // Axin-APC-beta-catenin-GSK3B complex // inferred from electronic annotation /// 0034747 // Axin-APC-beta-catenin-GSK3B complex // not recorded /// 0042995 // cell projection // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0008013 // beta-catenin binding // inferred from sequence or structural similarity /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from direct assay /// 0008017 // microtubule binding // not recorded /// 0008017 // microtubule binding // inferred from sequence or structural similarity /// 0008017 // microtubule binding // inferred from electronic annotation /// 0019887 // protein kinase regulator activity // not recorded /// 0019887 // protein kinase regulator activity // inferred from sequence or structural similarity /// 0019887 // protein kinase regulator activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0045295 // gamma-catenin binding // inferred from electronic annotation /// 0045295 // gamma-catenin binding // not recorded /// 0045296 // cadherin binding // not recorded /// 0051010 // microtubule plus-end binding // not recorded /// 0051010 // microtubule plus-end binding // inferred from sequence or structural similarity /// 0051010 // microtubule plus-end binding // inferred from electronic annotation 1387838_at NM_012594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012594.1 /DB_XREF=gi:6981139 /GEN=Lalba /FEA=FLmRNA /CNT=7 /TID=Rn.10479.1 /TIER=FL /STK=0 /UG=Rn.10479 /LL=24528 /DEF=Rattus norvegicus Lactalbumin, alpha (Lalba), mRNA. /PROD=lactalbumin, alpha /FL=gb:NM_012594.1 NM_012594 lactalbumin, alpha Lalba 24528 NM_012594 0005989 // lactose biosynthetic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0004461 // lactose synthase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387839_at NM_012646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012646.1 /DB_XREF=gi:6981491 /GEN=RT1-N1 /FEA=FLmRNA /CNT=9 /TID=Rn.1523.1 /TIER=FL /STK=0 /UG=Rn.1523 /LL=24748 /DEF=Rattus norvegicus RT1 class Ib gene, H2-TL-like, grc region (RT1-N1), mRNA. /PROD=RT1 class Ib gene, H2-TL-like, grc region /FL=gb:NM_012646.1 NM_012646 RT1 class Ib, locus N1 /// RT1 class Ib, locus N2 RT1-N1 /// RT1-N2 24748 /// 360323 NM_001008854 /// NM_012646 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 1387840_at NM_021262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021262.1 /DB_XREF=gi:10863988 /GEN=Acp1 /FEA=FLmRNA /CNT=7 /TID=Rn.48720.1 /TIER=FL /STK=0 /UG=Rn.48720 /LL=24161 /DEF=Rattus norvegicus Acid phosphatase 1, soluble (Acp1), mRNA. /PROD=acid phosphatase 1, soluble /FL=gb:NM_021262.1 gb:AF171072.1 NM_021262 acid phosphatase 1, soluble Acp1 24161 NM_001135562 /// NM_021262 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from expression pattern /// 0007268 // synaptic transmission // non-traceable author statement /// 0016311 // dephosphorylation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay 0003993 // acid phosphatase activity // inferred from direct assay /// 0003993 // acid phosphatase activity // not recorded /// 0003993 // acid phosphatase activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004726 // non-membrane spanning protein tyrosine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // not recorded /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from direct assay /// 0042802 // identical protein binding // not recorded 1387841_at NM_022204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022204.1 /DB_XREF=gi:11559975 /GEN=LOC60627 /FEA=FLmRNA /CNT=7 /TID=Rn.44430.1 /TIER=FL /STK=0 /UG=Rn.44430 /LL=60627 /DEF=Rattus norvegicus component of rsec68 secretory complex p71 (71 kDa) (LOC60627), mRNA. /PROD=component of rsec68 secretory complex p71 (71kDa) /FL=gb:NM_022204.1 gb:U79417.1 NM_022204 exocyst complex component 5 Exoc5 60627 NM_022204 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0048278 // vesicle docking // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0047485 // protein N-terminus binding // not recorded 1387842_at NM_053325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053325.1 /DB_XREF=gi:16758025 /GEN=Syt8 /FEA=FLmRNA /CNT=5 /TID=Rn.46519.1 /TIER=FL /STK=0 /UG=Rn.46519 /LL=60566 /DEF=Rattus norvegicus synaptotagmin 8 (Syt8), mRNA. /PROD=synaptotagmin 8 /FL=gb:AF375462.1 gb:NM_053325.1 gb:AF375467.1 NM_053325 synaptotagmin VIII Syt8 60566 NM_053325 0006810 // transport // inferred from electronic annotation /// 0007340 // acrosome reaction // inferred from electronic annotation /// 0007340 // acrosome reaction // not recorded 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded 1387843_at NM_012561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012561.1 /DB_XREF=gi:6978856 /GEN=Fst /FEA=FLmRNA /CNT=7 /TID=Rn.22500.1 /TIER=FL /STK=0 /UG=Rn.22500 /LL=24373 /DEF=Rattus norvegicus Follistatin (Fst), mRNA. /PROD=follistatin /FL=gb:NM_012561.1 NM_012561 follistatin Fst 24373 NM_012561 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0002244 // hemopoietic progenitor cell differentiation // inferred from electronic annotation /// 0002244 // hemopoietic progenitor cell differentiation // not recorded /// 0007276 // gamete generation // inferred from electronic annotation /// 0007276 // gamete generation // not recorded /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0008585 // female gonad development // inferred from electronic annotation /// 0008585 // female gonad development // not recorded /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030509 // BMP signaling pathway // not recorded /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // not recorded /// 0032926 // negative regulation of activin receptor signaling pathway // inferred from electronic annotation /// 0032926 // negative regulation of activin receptor signaling pathway // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0043616 // keratinocyte proliferation // inferred from electronic annotation /// 0043616 // keratinocyte proliferation // not recorded /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0046882 // negative regulation of follicle-stimulating hormone secretion // traceable author statement /// 0051798 // positive regulation of hair follicle development // inferred from electronic annotation /// 0051798 // positive regulation of hair follicle development // not recorded 0005576 // extracellular region // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043395 // heparan sulfate proteoglycan binding // inferred from direct assay /// 0048185 // activin binding // not recorded /// 0048185 // activin binding // traceable author statement /// 0048185 // activin binding // inferred from electronic annotation 1387844_at NM_032613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032613.1 /DB_XREF=gi:14249129 /GEN=Lasp1 /FEA=FLmRNA /CNT=4 /TID=Rn.69815.1 /TIER=FL /STK=0 /UG=Rn.69815 /LL=29278 /DEF=Rattus norvegicus LIM and SH3 protein 1 (Lasp1), mRNA. /PROD=LIM and SH3 protein 1 /FL=gb:NM_032613.1 gb:AF242187.1 NM_032613 LIM and SH3 protein 1 Lasp1 29278 NM_032613 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from direct assay /// 0006811 // ion transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0005938 // cell cortex // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0015075 // ion transmembrane transporter activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1387845_at NM_133426 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133426.1 /DB_XREF=gi:19173803 /GEN=Kv6.3 /FEA=FLmRNA /CNT=5 /TID=Rn.82689.1 /TIER=FL /STK=0 /UG=Rn.82689 /DEF=Rattus norvegicus voltage-gated potassium channel 6.3 (Kv6.3), mRNA. /PROD=voltage-gated potassium channel 6.3 /FL=gb:AB070605.1 gb:NM_133426.1 NM_133426 potassium voltage-gated channel, subfamily G, member 3 Kcng3 171011 NM_001033957 /// NM_133426 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from direct assay /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from direct assay /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387846_at NM_053701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053701.1 /DB_XREF=gi:16758517 /GEN=Cacna1f /FEA=FLmRNA /CNT=5 /TID=Rn.39125.1 /TIER=FL /STK=0 /UG=Rn.39125 /LL=114493 /DEF=Rattus norvegicus calcium channel, voltage-dependent, alpha 1F subunit (Cacna1f), mRNA. /PROD=calcium channel, voltage-dependent, alpha 1Fsubunit /FL=gb:NM_053701.1 gb:AF365975.1 NM_053701 calcium channel, voltage-dependent, L type, alpha 1F subunit Cacna1f 114493 NM_053701 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0007269 // neurotransmitter secretion // non-traceable author statement /// 0007409 // axonogenesis // not recorded /// 0007601 // visual perception // inferred from expression pattern /// 0007601 // visual perception // not recorded /// 0048813 // dendrite morphogenesis // not recorded /// 0050908 // detection of light stimulus involved in visual perception // not recorded /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // not recorded 0000299 // integral to membrane of membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005891 // voltage-gated calcium channel complex // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // not recorded /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0043025 // neuronal cell body // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // not recorded /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387847_at NM_053481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053481.1 /DB_XREF=gi:16758235 /GEN=Pik3cb /FEA=FLmRNA /CNT=3 /TID=Rn.44268.1 /TIER=FL /STK=0 /UG=Rn.44268 /LL=85243 /DEF=Rattus norvegicus phosphatidylinositol 3-kinase, catalytic subunit, beta isoform (Pik3cb), mRNA. /PROD=phosphatidylinositol 3-kinase, catalyticsubunit, beta isoform /FL=gb:NM_053481.1 NM_053481 G protein-coupled receptor 98 Gpr98 685383 XM_001063571 /// XM_002725894 0007154 // cell communication // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0046854 // phosphoinositide phosphorylation // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004428 // inositol or phosphatidylinositol kinase activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1387848_at NM_013134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013134.1 /DB_XREF=gi:6981027 /GEN=Hmgcr /FEA=FLmRNA /CNT=3 /TID=Rn.10469.1 /TIER=FL /STK=0 /UG=Rn.10469 /LL=25675 /DEF=Rattus norvegicus 3-hydroxy-3-methylglutaryl-Coenzyme A reductase (Hmgcr), mRNA. /PROD=3 /FL=gb:NM_013134.1 NM_013134 3-hydroxy-3-methylglutaryl-Coenzyme A reductase Hmgcr 25675 NM_013134 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from direct assay /// 0006695 // cholesterol biosynthetic process // not recorded /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008299 // isoprenoid biosynthetic process // inferred from direct assay /// 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation /// 0008542 // visual learning // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0010142 // farnesyl diphosphate biosynthetic process, mevalonate pathway // traceable author statement /// 0015936 // coenzyme A metabolic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // not recorded /// 0048643 // positive regulation of skeletal muscle tissue development // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004420 // hydroxymethylglutaryl-CoA reductase (NADPH) activity // inferred from electronic annotation /// 0004420 // hydroxymethylglutaryl-CoA reductase (NADPH) activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0042282 // hydroxymethylglutaryl-CoA reductase activity // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0050661 // NADP or NADPH binding // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation 1387849_at NM_021852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021852.1 /DB_XREF=gi:11177889 /GEN=Epn2 /FEA=FLmRNA /CNT=3 /TID=Rn.44273.1 /TIER=FL /STK=0 /UG=Rn.44273 /LL=60443 /DEF=Rattus norvegicus EH domain binding protein epsin 2 (Epn2), mRNA. /PROD=EH domain binding protein epsin 2 /FL=gb:NM_021852.1 gb:AF096269.1 NM_021852 epsin 2 Epn2 60443 NM_001033914 /// NM_021852 0006897 // endocytosis // inferred from electronic annotation /// 0030100 // regulation of endocytosis // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0030128 // clathrin coat of endocytic vesicle // inferred from direct assay 0008289 // lipid binding // inferred from electronic annotation 1387850_at NM_023020 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023020.1 /DB_XREF=gi:12711685 /GEN=Tmeff1 /FEA=FLmRNA /CNT=3 /TID=Rn.44829.1 /TIER=FL /STK=0 /UG=Rn.44829 /LL=63845 /DEF=Rattus norvegicus transmembrane protein with EGF-like and two follistatin-like domains 1 (Tmeff1), mRNA. /PROD=transmembrane protein with EGF-like and twofollistatin-like domains 1 /FL=gb:NM_023020.1 NM_023020 transmembrane protein with EGF-like and two follistatin-like domains 1 Tmeff1 63845 NM_023020 0007275 // multicellular organismal development // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1387851_at NM_022224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022224.1 /DB_XREF=gi:11560013 /GEN=Rpr1 /FEA=FLmRNA /CNT=3 /TID=Rn.44484.1 /TIER=FL /STK=0 /UG=Rn.44484 /LL=63852 /DEF=Rattus norvegicus resiniferatoxin-binding, phosphotriesterase-related protein (Rpr1), mRNA. /PROD=resiniferatoxin-binding,phosphotriesterase-related protein /FL=gb:NM_022224.1 NM_022224 phosphotriesterase related Pter 63852 NM_022224 0009056 // catabolic process // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387852_at NM_012703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012703.1 /DB_XREF=gi:13487928 /GEN=Thrsp /FEA=FLmRNA /CNT=3 /TID=Rn.81140.1 /TIER=FL /STK=0 /UG=Rn.81140 /LL=24927 /DEF=Rattus norvegicus Thyroid hormone responsive protein (spot14) (Thrsp), mRNA. /PROD=thyroid hormone responsive protein (spot14) /FL=gb:NM_012703.1 NM_012703 thyroid hormone responsive Thrsp 25357 NM_012703 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387853_at NM_012490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012490.1 /DB_XREF=gi:6978438 /GEN=Acr /FEA=FLmRNA /CNT=2 /TID=Rn.10423.1 /TIER=FL /STK=0 /UG=Rn.10423 /LL=24163 /DEF=Rattus norvegicus Acrosin (Acr), mRNA. /PROD=acrosin /FL=gb:NM_012490.1 NM_012490 acrosin Acr 24163 NM_012490 0006508 // proteolysis // inferred from electronic annotation /// 0007190 // activation of adenylate cyclase activity // not recorded /// 0007190 // activation of adenylate cyclase activity // inferred from sequence or structural similarity /// 0007190 // activation of adenylate cyclase activity // inferred from electronic annotation /// 0007338 // single fertilization // not recorded /// 0007338 // single fertilization // inferred from sequence or structural similarity /// 0007338 // single fertilization // traceable author statement /// 0007338 // single fertilization // inferred from electronic annotation /// 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation /// 0007339 // binding of sperm to zona pellucida // not recorded /// 0007340 // acrosome reaction // not recorded /// 0007340 // acrosome reaction // inferred from sequence or structural similarity /// 0007340 // acrosome reaction // traceable author statement /// 0007340 // acrosome reaction // inferred from electronic annotation /// 0007341 // penetration of zona pellucida // not recorded /// 0007341 // penetration of zona pellucida // inferred from sequence or structural similarity /// 0007341 // penetration of zona pellucida // traceable author statement /// 0007341 // penetration of zona pellucida // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0009607 // response to biotic stimulus // inferred from direct assay /// 0048545 // response to steroid hormone stimulus // inferred from direct assay 0001669 // acrosomal vesicle // inferred from direct assay /// 0001669 // acrosomal vesicle // not recorded /// 0001669 // acrosomal vesicle // traceable author statement /// 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0005798 // Golgi-associated vesicle // inferred from direct assay /// 0043159 // acrosomal matrix // traceable author statement /// 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004040 // amidase activity // inferred from sequence or structural similarity /// 0004252 // serine-type endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from sequence or structural similarity /// 0004252 // serine-type endopeptidase activity // traceable author statement /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005537 // mannose binding // not recorded /// 0005537 // mannose binding // inferred from sequence or structural similarity /// 0005537 // mannose binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from sequence or structural similarity /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042806 // fucose binding // inferred from sequence or structural similarity 1387854_at BI282748 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282748 /DB_XREF=gi:14933824 /DB_XREF=UI-R-CW0s-cce-g-02-0-UI.s1 /CLONE=UI-R-CW0s-cce-g-02-0-UI /FEA=FLmRNA /CNT=162 /TID=Rn.16629.1 /TIER=Stack /STK=30 /UG=Rn.16629 /LL=84352 /UG_GENE=Col1a2 /UG_TITLE=procollagen, type I, alpha 2 /FL=gb:NM_053356.1 gb:AF121217.1 BI282748 collagen, type I, alpha 2 Col1a2 84352 NM_053356 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007266 // Rho protein signal transduction // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // not recorded /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008217 // regulation of blood pressure // not recorded /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0030199 // collagen fibril organization // not recorded /// 0043589 // skin morphogenesis // inferred from electronic annotation /// 0043589 // skin morphogenesis // not recorded /// 0070208 // protein heterotrimerization // inferred from electronic annotation /// 0070208 // protein heterotrimerization // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen // inferred from electronic annotation /// 0005581 // collagen // not recorded /// 0005584 // collagen type I // inferred from electronic annotation /// 0005584 // collagen type I // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005886 // plasma membrane // not recorded /// 0031012 // extracellular matrix // not recorded 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030674 // protein binding, bridging // inferred from electronic annotation /// 0030674 // protein binding, bridging // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046332 // SMAD binding // not recorded /// 0048407 // platelet-derived growth factor binding // inferred from electronic annotation /// 0048407 // platelet-derived growth factor binding // not recorded 1387855_at BI278628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278628 /DB_XREF=gi:14925663 /DB_XREF=UI-R-CW0-bxn-h-12-0-UI.s1 /CLONE=UI-R-CW0-bxn-h-12-0-UI /FEA=FLmRNA /CNT=46 /TID=Rn.4000.1 /TIER=Stack /STK=25 /UG=Rn.4000 /LL=25183 /UG_GENE=Gdi1 /UG_TITLE=GDP-dissociation inhibitor 1 /FL=gb:NM_017088.1 gb:U07952.1 BI278628 GDP dissociation inhibitor 1 Gdi1 25183 NM_017088 0015031 // protein transport // inferred from electronic annotation /// 0043087 // regulation of GTPase activity // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0019717 // synaptosome // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005093 // Rab GDP-dissociation inhibitor activity // inferred from direct assay /// 0005093 // Rab GDP-dissociation inhibitor activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1387856_at BI274457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274457 /DB_XREF=gi:14885390 /DB_XREF=UI-R-CW0-bwj-b-03-0-UI.s1 /CLONE=UI-R-CW0-bwj-b-03-0-UI /FEA=FLmRNA /CNT=64 /TID=Rn.871.1 /TIER=Stack /STK=18 /UG=Rn.871 /LL=54321 /UG_GENE=Cnn3 /UG_TITLE=acidic calponin /FL=gb:U06755.1 gb:NM_019359.1 BI274457 calponin 3, acidic Cnn3 54321 NM_019359 0031032 // actomyosin structure organization // inferred from electronic annotation /// 0032780 // negative regulation of ATPase activity // inferred from direct assay 0005874 // microtubule // traceable author statement /// 0005884 // actin filament // traceable author statement /// 0014069 // postsynaptic density // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from direct assay /// 0030674 // protein binding, bridging // non-traceable author statement 1387857_at AI406531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406531 /DB_XREF=gi:4250035 /DB_XREF=EST234817 /CLONE=RBRDL38 /FEA=FLmRNA /CNT=30 /TID=Rn.1993.1 /TIER=Stack /STK=18 /UG=Rn.1993 /LL=60466 /UG_GENE=Stx7 /UG_TITLE=syntaxin 7 /FL=gb:AF031430.1 gb:NM_021869.1 AI406531 syntaxin 7 Stx7 60466 NM_021869 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016079 // synaptic vesicle exocytosis // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005768 // endosome // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031201 // SNARE complex // inferred from direct assay /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay 1387858_at AI535053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535053 /DB_XREF=gi:4449182 /DB_XREF=UI-R-C3-sn-a-12-0-UI.s1 /CLONE=UI-R-C3-sn-a-12-0-UI /FEA=FLmRNA /CNT=367 /TID=Rn.16065.1 /TIER=Stack /STK=6 /UG=Rn.16065 /UG_TITLE=Rattus norvegicus putative protein serinethreonine phosphatase 4-associated protein mRNA, complete cds /FL=gb:NM_080907.1 gb:AF332004.1 AI535053 protein phosphatase 4, regulatory subunit 1 Ppp4r1 140943 NM_080907 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387859_at AI410876 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410876 /DB_XREF=gi:4254380 /DB_XREF=EST239169 /CLONE=RHECY56 /FEA=FLmRNA /CNT=26 /TID=Rn.3151.1 /TIER=Stack /STK=17 /UG=Rn.3151 /LL=84594 /UG_GENE=Nifs /UG_TITLE=cysteine desulfurase /FL=gb:NM_053462.1 gb:AF336041.1 AI410876 NFS1 nitrogen fixation 1 homolog (S. cerevisiae) Nfs1 84594 NM_053462 0006534 // cysteine metabolic process // inferred from electronic annotation /// 0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0018283 // iron incorporation into metallo-sulfur cluster // inferred from electronic annotation /// 0018283 // iron incorporation into metallo-sulfur cluster // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0031071 // cysteine desulfurase activity // inferred from electronic annotation /// 0031071 // cysteine desulfurase activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1387860_at BF281377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281377 /DB_XREF=gi:11212447 /DB_XREF=EST445968 /CLONE=RGIAD94 /FEA=FLmRNA /CNT=32 /TID=Rn.6822.1 /TIER=Stack /STK=16 /UG=Rn.6822 /LL=29154 /UG_GENE=Capn2 /UG_TITLE=calpain 2 /FL=gb:NM_017116.1 gb:L09120.1 BF281377 calpain 2 Capn2 29154 NM_017116 0001666 // response to hypoxia // inferred from expression pattern /// 0001824 // blastocyst development // inferred from electronic annotation /// 0001824 // blastocyst development // not recorded /// 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0007520 // myoblast fusion // inferred from electronic annotation /// 0007520 // myoblast fusion // not recorded /// 0016540 // protein autoprocessing // inferred by curator /// 0016540 // protein autoprocessing // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // inferred from direct assay /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1387861_at BI274118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274118 /DB_XREF=gi:14884739 /DB_XREF=UI-R-CW0-bwf-b-09-0-UI.s1 /CLONE=UI-R-CW0-bwf-b-09-0-UI /FEA=FLmRNA /CNT=51 /TID=Rn.11495.1 /TIER=Stack /STK=14 /UG=Rn.11495 /LL=29466 /UG_GENE=Aes /UG_TITLE=amino-terminal enhancer of split /FL=gb:L14462.1 gb:NM_019220.1 BI274118 amino-terminal enhancer of split Aes 29466 NM_019220 0001501 // skeletal system development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0031668 // cellular response to extracellular stimulus // not recorded /// 0032091 // negative regulation of protein binding // not recorded /// 0040008 // regulation of growth // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0060761 // negative regulation of response to cytokine stimulus // not recorded /// 0070555 // response to interleukin-1 // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // not recorded 1387862_at BF281342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281342 /DB_XREF=gi:11212412 /DB_XREF=EST445933 /CLONE=RGIAD49 /FEA=FLmRNA /CNT=92 /TID=Rn.2502.1 /TIER=Stack /STK=12 /UG=Rn.2502 /LL=25577 /UG_GENE=Ywhaq /UG_TITLE=Tyrosine 3-monooxygenasetryptophan 5-monooxygenase activation protein, theta polypeptide /FL=gb:NM_013053.1 gb:D17614.1 BF281342 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide Ywhaq 25577 NM_013053 0006605 // protein targeting // inferred from electronic annotation /// 0006605 // protein targeting // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1387863_at BE099415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099415 /DB_XREF=gi:8491331 /DB_XREF=UI-R-BJ1-atw-f-03-0-UI.s1 /CLONE=UI-R-BJ1-atw-f-03-0-UI /FEA=FLmRNA /CNT=56 /TID=Rn.3562.1 /TIER=Stack /STK=8 /UG=Rn.3562 /LL=117180 /UG_GENE=unr /UG_TITLE=unr protein /FL=gb:NM_054006.1 BE099415 cold shock domain containing E1, RNA binding /// cold shock domain containing E1, RNA binding-like Csde1 /// LOC100362464 100362464 /// 117180 NM_054006 /// XM_002729113 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387864_at AI169232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169232 /DB_XREF=gi:3705540 /DB_XREF=EST215067 /CLONE=RKIBP11 /FEA=FLmRNA /CNT=41 /TID=Rn.16792.1 /TIER=Stack /STK=12 /UG=Rn.16792 /LL=116478 /UG_GENE=Kidins220 /UG_TITLE=kinase D-interacting substance of 220 kDa /FL=gb:AF239045.2 gb:NM_053795.1 AI169232 kinase D-interacting substrate 220 Kidins220 116478 NM_053795 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0019887 // protein kinase regulator activity // inferred from direct assay /// 0019901 // protein kinase binding // inferred from direct assay 1387865_at AI411157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411157 /DB_XREF=gi:4254661 /DB_XREF=EST239451 /CLONE=RKIET79 /FEA=FLmRNA /CNT=22 /TID=Rn.6102.1 /TIER=Stack /STK=12 /UG=Rn.6102 /LL=94200 /UG_GENE=LOC94200 /UG_TITLE=dUTPase /FL=gb:U64030.2 gb:NM_053592.1 AI411157 deoxyuridine triphosphatase Dut 497778 NM_001040271 /// NM_053592 0006226 // dUMP biosynthetic process // inferred from direct assay /// 0009117 // nucleotide metabolic process // inferred from electronic annotation /// 0046080 // dUTP metabolic process // inferred from electronic annotation /// 0046081 // dUTP catabolic process // inferred from direct assay 0005634 // nucleus // inferred from expression pattern /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from expression pattern /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0004170 // dUTP diphosphatase activity // inferred from direct assay /// 0004170 // dUTP diphosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030547 // receptor inhibitor activity // inferred from direct assay /// 0032556 // pyrimidine deoxyribonucleotide binding // inferred from direct assay /// 0042975 // peroxisome proliferator activated receptor binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1387866_at AI178160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178160 /DB_XREF=gi:3728798 /DB_XREF=EST221825 /CLONE=RPLCM96 /FEA=FLmRNA /CNT=14 /TID=Rn.33782.1 /TIER=Stack /STK=11 /UG=Rn.33782 /LL=25486 /UG_GENE=Myo9b /UG_TITLE=myosin IXb /FL=gb:NM_012984.1 AI178160 myosin IXb Myo9b 25486 NM_012984 0006200 // ATP catabolic process // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // inferred from direct assay /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0032011 // ARF protein signal transduction // not recorded 0001726 // ruffle // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // inferred from direct assay /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0016459 // myosin complex // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from direct assay /// 0031941 // filamentous actin // inferred from electronic annotation /// 0031941 // filamentous actin // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000146 // microfilament motor activity // inferred from electronic annotation /// 0000146 // microfilament motor activity // not recorded /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from direct assay /// 0003779 // actin binding // not recorded /// 0003779 // actin binding // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from direct assay /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005100 // Rho GTPase activator activity // inferred from direct assay /// 0005100 // Rho GTPase activator activity // inferred from mutant phenotype /// 0005100 // Rho GTPase activator activity // not recorded /// 0005100 // Rho GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0016887 // ATPase activity // inferred from direct assay /// 0016887 // ATPase activity // inferred from mutant phenotype /// 0016887 // ATPase activity // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from physical interaction /// 0030898 // actin-dependent ATPase activity // inferred from direct assay /// 0030898 // actin-dependent ATPase activity // inferred from mutant phenotype /// 0042803 // protein homodimerization activity // not recorded /// 0043008 // ATP-dependent protein binding // inferred from direct assay /// 0043531 // ADP binding // inferred from direct assay /// 0043531 // ADP binding // inferred from mutant phenotype /// 0043531 // ADP binding // not recorded /// 0043531 // ADP binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from direct assay /// 0051015 // actin filament binding // inferred from mutant phenotype 1387867_at BG672075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672075 /DB_XREF=gi:13894174 /DB_XREF=DRNCBF10 /CLONE=DRNCBF10 /FEA=FLmRNA /CNT=31 /TID=Rn.33685.1 /TIER=Stack /STK=10 /UG=Rn.33685 /LL=64040 /UG_GENE=Aldh9a1 /UG_TITLE=aldehyde dehydrogenase family 9, subfamily A1 /FL=gb:NM_022273.1 gb:AF170918.1 BG672075 aldehyde dehydrogenase 9 family, member A1 Aldh9a1 64040 NM_022273 0001822 // kidney development // inferred from expression pattern /// 0001889 // liver development // inferred from expression pattern /// 0006081 // cellular aldehyde metabolic process // inferred from electronic annotation /// 0006081 // cellular aldehyde metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009437 // carnitine metabolic process // not recorded /// 0009437 // carnitine metabolic process // inferred from electronic annotation /// 0042136 // neurotransmitter biosynthetic process // inferred from electronic annotation /// 0042136 // neurotransmitter biosynthetic process // not recorded /// 0045329 // carnitine biosynthetic process // traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // non-traceable author statement /// 0005829 // cytosol // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded 0004029 // aldehyde dehydrogenase (NAD) activity // inferred from direct assay /// 0004029 // aldehyde dehydrogenase (NAD) activity // not recorded /// 0004029 // aldehyde dehydrogenase (NAD) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016620 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor // not recorded /// 0016620 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0019145 // aminobutyraldehyde dehydrogenase activity // inferred from direct assay /// 0019145 // aminobutyraldehyde dehydrogenase activity // not recorded /// 0019145 // aminobutyraldehyde dehydrogenase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043176 // amine binding // inferred from direct assay /// 0047105 // 4-trimethylammoniobutyraldehyde dehydrogenase activity // inferred from direct assay /// 0047105 // 4-trimethylammoniobutyraldehyde dehydrogenase activity // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from direct assay 1387868_at BF289368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289368 /DB_XREF=gi:11220438 /DB_XREF=EST453959 /CLONE=RGIHD96 /FEA=FLmRNA /CNT=19 /TID=Rn.48863.1 /TIER=Stack /STK=9 /UG=Rn.48863 /LL=29469 /UG_GENE=Lbp /UG_TITLE=lipopolysaccharide binding protein /FL=gb:L32132.1 gb:NM_017208.1 BF289368 lipopolysaccharide binding protein Lbp 29469 NM_017208 0002232 // leukocyte chemotaxis involved in inflammatory response // inferred from electronic annotation /// 0002232 // leukocyte chemotaxis involved in inflammatory response // not recorded /// 0002281 // macrophage activation involved in immune response // inferred from electronic annotation /// 0002281 // macrophage activation involved in immune response // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0006953 // acute-phase response // not recorded /// 0015920 // lipopolysaccharide transport // inferred from electronic annotation /// 0015920 // lipopolysaccharide transport // not recorded /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0031663 // lipopolysaccharide-mediated signaling pathway // not recorded /// 0032490 // detection of molecule of bacterial origin // inferred from electronic annotation /// 0032490 // detection of molecule of bacterial origin // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0032720 // negative regulation of tumor necrosis factor production // inferred from electronic annotation /// 0032720 // negative regulation of tumor necrosis factor production // not recorded /// 0032722 // positive regulation of chemokine production // inferred from electronic annotation /// 0032722 // positive regulation of chemokine production // not recorded /// 0032755 // positive regulation of interleukin-6 production // inferred from electronic annotation /// 0032755 // positive regulation of interleukin-6 production // not recorded /// 0032757 // positive regulation of interleukin-8 production // inferred from electronic annotation /// 0032757 // positive regulation of interleukin-8 production // not recorded /// 0032760 // positive regulation of tumor necrosis factor production // inferred from electronic annotation /// 0032760 // positive regulation of tumor necrosis factor production // not recorded /// 0034145 // positive regulation of toll-like receptor 4 signaling pathway // inferred from electronic annotation /// 0034145 // positive regulation of toll-like receptor 4 signaling pathway // not recorded /// 0042535 // positive regulation of tumor necrosis factor biosynthetic process // inferred from electronic annotation /// 0042535 // positive regulation of tumor necrosis factor biosynthetic process // not recorded /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0043032 // positive regulation of macrophage activation // inferred from electronic annotation /// 0043032 // positive regulation of macrophage activation // not recorded /// 0044130 // negative regulation of growth of symbiont in host // inferred from electronic annotation /// 0044130 // negative regulation of growth of symbiont in host // not recorded /// 0045087 // innate immune response // inferred from electronic annotation /// 0045087 // innate immune response // not recorded /// 0050829 // defense response to Gram-negative bacterium // inferred from electronic annotation /// 0050829 // defense response to Gram-negative bacterium // not recorded /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // not recorded /// 0060265 // positive regulation of respiratory burst involved in inflammatory response // inferred from electronic annotation /// 0060265 // positive regulation of respiratory burst involved in inflammatory response // not recorded /// 0071222 // cellular response to lipopolysaccharide // not recorded /// 0071223 // cellular response to lipoteichoic acid // inferred from electronic annotation /// 0071223 // cellular response to lipoteichoic acid // not recorded /// 0090023 // positive regulation of neutrophil chemotaxis // inferred from electronic annotation /// 0090023 // positive regulation of neutrophil chemotaxis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0001530 // lipopolysaccharide binding // inferred from electronic annotation /// 0001530 // lipopolysaccharide binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0051636 // Gram-negative bacterial cell surface binding // inferred from electronic annotation /// 0051636 // Gram-negative bacterial cell surface binding // not recorded /// 0051637 // Gram-positive bacterial cell surface binding // inferred from electronic annotation /// 0051637 // Gram-positive bacterial cell surface binding // not recorded /// 0070891 // lipoteichoic acid binding // inferred from electronic annotation /// 0070891 // lipoteichoic acid binding // not recorded 1387869_s_at AI410860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410860 /DB_XREF=gi:4254364 /DB_XREF=EST239153 /CLONE=RHECZ12 /FEA=FLmRNA /CNT=22 /TID=Rn.29434.1 /TIER=Stack /STK=9 /UG=Rn.29434 /LL=58983 /UG_GENE=Rabggta /UG_TITLE=Rab geranylgeranyl transferase, a subunit /FL=gb:NM_031654.1 gb:L10415.1 AI410860 Rab geranylgeranyltransferase, alpha subunit Rabggta 58983 NM_031654 0018344 // protein geranylgeranylation // inferred from direct assay /// 0018344 // protein geranylgeranylation // not recorded /// 0018344 // protein geranylgeranylation // inferred from electronic annotation 0004659 // prenyltransferase activity // inferred from electronic annotation /// 0004663 // Rab geranylgeranyltransferase activity // inferred from direct assay /// 0004663 // Rab geranylgeranyltransferase activity // not recorded /// 0004663 // Rab geranylgeranyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008318 // protein prenyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387870_at AB025017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB025017 /DB_XREF=gi:9971205 /FEA=FLmRNA /CNT=17 /TID=Rn.2454.1 /TIER=Stack /STK=9 /UG=Rn.2454 /LL=79426 /UG_GENE=Zfp36 /UG_TITLE=zinc finger protein 36 /DEF=Rattus norvegicus gene for TIS11, complete cds /FL=gb:NM_133290.1 AB025017 zinc finger protein 36 Zfp36 79426 NM_133290 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // not recorded /// 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // inferred from electronic annotation /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // not recorded /// 0000289 // nuclear-transcribed mRNA poly(A) tail shortening // inferred from electronic annotation /// 0006402 // mRNA catabolic process // not recorded /// 0006402 // mRNA catabolic process // inferred from sequence or structural similarity /// 0006402 // mRNA catabolic process // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0043488 // regulation of mRNA stability // inferred from electronic annotation /// 0043488 // regulation of mRNA stability // not recorded /// 0045638 // negative regulation of myeloid cell differentiation // inferred from electronic annotation /// 0045638 // negative regulation of myeloid cell differentiation // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // traceable author statement /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // not recorded /// 0050779 // RNA destabilization // inferred from electronic annotation /// 0050779 // RNA destabilization // not recorded /// 0060213 // positive regulation of nuclear-transcribed mRNA poly(A) tail shortening // not recorded /// 0060213 // positive regulation of nuclear-transcribed mRNA poly(A) tail shortening // inferred from sequence or structural similarity /// 0060213 // positive regulation of nuclear-transcribed mRNA poly(A) tail shortening // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // traceable author statement /// 0017091 // AU-rich element binding // not recorded /// 0017091 // AU-rich element binding // inferred from sequence or structural similarity /// 0017091 // AU-rich element binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387871_at BM389673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389673 /DB_XREF=gi:18189726 /DB_XREF=UI-R-CN1-cjo-o-19-0-UI.s1 /CLONE=UI-R-CN1-cjo-o-19-0-UI /FEA=FLmRNA /CNT=109 /TID=Rn.11675.1 /TIER=Stack /STK=8 /UG=Rn.11675 /LL=29271 /UG_GENE=Cfl1 /UG_TITLE=cofilin 1, non-muscle /FL=gb:NM_017147.1 BM389673 1387872_at BF396270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396270 /DB_XREF=gi:11381242 /DB_XREF=UI-R-BS2-bdw-c-02-0-UI.s1 /CLONE=UI-R-BS2-bdw-c-02-0-UI /FEA=FLmRNA /CNT=34 /TID=Rn.35870.1 /TIER=Stack /STK=8 /UG=Rn.35870 /LL=29578 /UG_GENE=Hnrpa1 /UG_TITLE=heterogeneous nuclear ribonucleoprotein A1 /FL=gb:NM_017248.1 gb:M12156.1 BF396270 heterogeneous nuclear ribonucleoprotein A1 Hnrnpa1 29578 NM_017248 0000380 // alternative nuclear mRNA splicing, via spliceosome // not recorded /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0016070 // RNA metabolic process // traceable author statement /// 0051028 // mRNA transport // inferred from electronic annotation /// 0051168 // nuclear export // not recorded /// 0051168 // nuclear export // inferred from sequence or structural similarity /// 0051170 // nuclear import // not recorded /// 0051170 // nuclear import // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005654 // nucleoplasm // inferred from sequence or structural similarity /// 0005681 // spliceosomal complex // not recorded /// 0005681 // spliceosomal complex // inferred from sequence or structural similarity /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // not recorded /// 0003697 // single-stranded DNA binding // inferred from sequence or structural similarity /// 0003697 // single-stranded DNA binding // traceable author statement /// 0003723 // RNA binding // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387873_at BI279661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279661 /DB_XREF=gi:14927690 /DB_XREF=UI-R-DE0-caf-b-09-0-UI.s1 /CLONE=UI-R-DE0-caf-b-09-0-UI /FEA=FLmRNA /CNT=15 /TID=Rn.3193.1 /TIER=Stack /STK=8 /UG=Rn.3193 /LL=171112 /UG_GENE=Wfdc1 /UG_TITLE=WAP four-disulfide core domain 1 /FL=gb:AF037272.1 gb:NM_133581.1 BI279661 WAP four-disulfide core domain 1 Wfdc1 171112 NM_133581 0001558 // regulation of cell growth // inferred from direct assay /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0050680 // negative regulation of epithelial cell proliferation // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1387874_at AI230048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230048 /DB_XREF=gi:3813935 /DB_XREF=EST226743 /CLONE=REMCQ24 /FEA=FLmRNA /CNT=23 /TID=Rn.11274.1 /TIER=Stack /STK=7 /UG=Rn.11274 /LL=24309 /UG_GENE=Dbp /UG_TITLE=D site albumin promoter binding protein /FL=gb:J03179.1 gb:NM_012543.1 AI230048 D site of albumin promoter (albumin D-box) binding protein Dbp 24309 NM_012543 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016563 // transcription activator activity // traceable author statement /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1387875_at BI294798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294798 /DB_XREF=gi:14957603 /DB_XREF=UI-R-DK0-cec-c-07-0-UI.s1 /CLONE=UI-R-DK0-cec-c-07-0-UI /FEA=FLmRNA /CNT=26 /TID=Rn.2809.1 /TIER=Stack /STK=7 /UG=Rn.2809 /LL=25614 /UG_GENE=Ptk2 /UG_TITLE=Protein tyrosine kinase /FL=gb:NM_013081.1 gb:AF020777.1 BI294798 PTK2 protein tyrosine kinase 2 Ptk2 25614 NM_013081 0000165 // MAPKKK cascade // inferred from mutant phenotype /// 0000226 // microtubule cytoskeleton organization // not recorded /// 0001525 // angiogenesis // not recorded /// 0001568 // blood vessel development // not recorded /// 0001570 // vasculogenesis // not recorded /// 0001764 // neuron migration // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007172 // signal complex assembly // inferred from electronic annotation /// 0007254 // JNK cascade // inferred from mutant phenotype /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014911 // positive regulation of smooth muscle cell migration // inferred from mutant phenotype /// 0016310 // phosphorylation // not recorded /// 0021955 // central nervous system neuron axonogenesis // not recorded /// 0030198 // extracellular matrix organization // not recorded /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030336 // negative regulation of cell migration // inferred from mutant phenotype /// 0030644 // cellular chloride ion homeostasis // inferred from mutant phenotype /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0040023 // establishment of nucleus localization // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0043542 // endothelial cell migration // not recorded /// 0045444 // fat cell differentiation // inferred from expression pattern /// 0045785 // positive regulation of cell adhesion // inferred from mutant phenotype /// 0045909 // positive regulation of vasodilation // inferred from mutant phenotype /// 0046621 // negative regulation of organ growth // not recorded /// 0046685 // response to arsenic // inferred from expression pattern /// 0046777 // protein autophosphorylation // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0050766 // positive regulation of phagocytosis // inferred from mutant phenotype /// 0050771 // negative regulation of axonogenesis // not recorded /// 0050806 // positive regulation of synaptic transmission // inferred from mutant phenotype /// 0051964 // negative regulation of synaptogenesis // not recorded /// 0060252 // positive regulation of glial cell proliferation // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // traceable author statement /// 0005925 // focal adhesion // inferred from electronic annotation /// 0014704 // intercalated disc // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016604 // nuclear body // inferred from direct assay /// 0030027 // lamellipodium // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from physical interaction /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0042169 // SH2 domain binding // not recorded /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction 1387876_at AI177626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177626 /DB_XREF=gi:3728264 /DB_XREF=EST221263 /CLONE=RPLCD18 /FEA=FLmRNA /CNT=13 /TID=Rn.54486.1 /TIER=Stack /STK=7 /UG=Rn.54486 /LL=25126 /UG_GENE=Stat5b /UG_TITLE=signal transducer and activator of transcription 5b /FL=gb:NM_022380.1 AI177626 signal transducer and activator of transcription 5B Stat5b 25126 NM_022380 0000255 // allantoin metabolic process // inferred from electronic annotation /// 0000255 // allantoin metabolic process // not recorded /// 0001553 // luteinization // inferred from direct assay /// 0001553 // luteinization // not recorded /// 0001553 // luteinization // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001779 // natural killer cell differentiation // not recorded /// 0001779 // natural killer cell differentiation // inferred from electronic annotation /// 0001889 // liver development // inferred from direct assay /// 0006101 // citrate metabolic process // inferred from electronic annotation /// 0006101 // citrate metabolic process // not recorded /// 0006103 // 2-oxoglutarate metabolic process // inferred from electronic annotation /// 0006103 // 2-oxoglutarate metabolic process // not recorded /// 0006105 // succinate metabolic process // inferred from electronic annotation /// 0006105 // succinate metabolic process // not recorded /// 0006107 // oxaloacetate metabolic process // inferred from electronic annotation /// 0006107 // oxaloacetate metabolic process // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006549 // isoleucine metabolic process // inferred from electronic annotation /// 0006549 // isoleucine metabolic process // not recorded /// 0006573 // valine metabolic process // inferred from electronic annotation /// 0006573 // valine metabolic process // not recorded /// 0006600 // creatine metabolic process // inferred from electronic annotation /// 0006600 // creatine metabolic process // not recorded /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // not recorded /// 0006953 // acute-phase response // inferred from direct assay /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007259 // JAK-STAT cascade // inferred from direct assay /// 0007259 // JAK-STAT cascade // not recorded /// 0007259 // JAK-STAT cascade // inferred from electronic annotation /// 0007548 // sex differentiation // inferred from electronic annotation /// 0007548 // sex differentiation // not recorded /// 0007565 // female pregnancy // inferred from electronic annotation /// 0007565 // female pregnancy // not recorded /// 0007595 // lactation // inferred from electronic annotation /// 0007595 // lactation // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0019218 // regulation of steroid metabolic process // inferred from electronic annotation /// 0019218 // regulation of steroid metabolic process // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019530 // taurine metabolic process // inferred from electronic annotation /// 0019530 // taurine metabolic process // not recorded /// 0019915 // lipid storage // inferred from electronic annotation /// 0019915 // lipid storage // not recorded /// 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0030155 // regulation of cell adhesion // not recorded /// 0030856 // regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030856 // regulation of epithelial cell differentiation // not recorded /// 0032355 // response to estradiol stimulus // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // not recorded /// 0032496 // response to lipopolysaccharide // inferred from direct assay /// 0032819 // positive regulation of natural killer cell proliferation // inferred from electronic annotation /// 0032819 // positive regulation of natural killer cell proliferation // not recorded /// 0032825 // positive regulation of natural killer cell differentiation // inferred from electronic annotation /// 0032825 // positive regulation of natural killer cell differentiation // not recorded /// 0032870 // cellular response to hormone stimulus // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // not recorded /// 0033077 // T cell differentiation in thymus // inferred from electronic annotation /// 0033077 // T cell differentiation in thymus // not recorded /// 0040014 // regulation of multicellular organism growth // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0042104 // positive regulation of activated T cell proliferation // inferred from electronic annotation /// 0042104 // positive regulation of activated T cell proliferation // not recorded /// 0042448 // progesterone metabolic process // inferred from electronic annotation /// 0042448 // progesterone metabolic process // not recorded /// 0043029 // T cell homeostasis // inferred from electronic annotation /// 0043029 // T cell homeostasis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045086 // positive regulation of interleukin-2 biosynthetic process // inferred from electronic annotation /// 0045086 // positive regulation of interleukin-2 biosynthetic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from expression pattern /// 0045579 // positive regulation of B cell differentiation // inferred from electronic annotation /// 0045579 // positive regulation of B cell differentiation // not recorded /// 0045588 // positive regulation of gamma-delta T cell differentiation // inferred from electronic annotation /// 0045588 // positive regulation of gamma-delta T cell differentiation // not recorded /// 0045621 // positive regulation of lymphocyte differentiation // not recorded /// 0045621 // positive regulation of lymphocyte differentiation // inferred from electronic annotation /// 0045647 // negative regulation of erythrocyte differentiation // inferred from electronic annotation /// 0045647 // negative regulation of erythrocyte differentiation // not recorded /// 0045885 // positive regulation of survival gene product expression // inferred from electronic annotation /// 0045885 // positive regulation of survival gene product expression // not recorded /// 0045931 // positive regulation of mitotic cell cycle // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // inferred from electronic annotation /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // not recorded /// 0046449 // creatinine metabolic process // inferred from electronic annotation /// 0046449 // creatinine metabolic process // not recorded /// 0046543 // development of secondary female sexual characteristics // inferred from electronic annotation /// 0046543 // development of secondary female sexual characteristics // not recorded /// 0046544 // development of secondary male sexual characteristics // inferred from electronic annotation /// 0046544 // development of secondary male sexual characteristics // not recorded /// 0048541 // Peyer's patch development // inferred from electronic annotation /// 0048541 // Peyer's patch development // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0050729 // positive regulation of inflammatory response // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // not recorded /// 0051272 // positive regulation of cellular component movement // inferred from mutant phenotype /// 0060397 // JAK-STAT cascade involved in growth hormone signaling pathway // inferred from electronic annotation /// 0060397 // JAK-STAT cascade involved in growth hormone signaling pathway // not recorded /// 0070669 // response to interleukin-2 // inferred from electronic annotation /// 0070669 // response to interleukin-2 // not recorded /// 0070670 // response to interleukin-4 // inferred from electronic annotation /// 0070670 // response to interleukin-4 // not recorded /// 0070672 // response to interleukin-15 // inferred from electronic annotation /// 0070672 // response to interleukin-15 // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035259 // glucocorticoid receptor binding // inferred from electronic annotation /// 0035259 // glucocorticoid receptor binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay 1387877_at BE096729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096729 /DB_XREF=gi:8487660 /DB_XREF=UI-R-BU0-apm-a-05-0-UI.s1 /CLONE=UI-R-BU0-apm-a-05-0-UI /FEA=FLmRNA /CNT=9 /TID=Rn.20140.1 /TIER=Stack /STK=7 /UG=Rn.20140 /LL=89833 /UG_GENE=Ftcd /UG_TITLE=formiminotransferase cyclodeaminase /FL=gb:AF079233.3 gb:NM_053567.1 BE096729 formiminotransferase cyclodeaminase Ftcd 89833 NM_053567 0006547 // histidine metabolic process // inferred from electronic annotation /// 0007010 // cytoskeleton organization // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0044237 // cellular metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005814 // centriole // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005542 // folic acid binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0019215 // intermediate filament binding // traceable author statement /// 0030409 // glutamate formimidoyltransferase activity // traceable author statement /// 0030409 // glutamate formimidoyltransferase activity // inferred from electronic annotation /// 0030412 // formimidoyltetrahydrofolate cyclodeaminase activity // traceable author statement /// 0030412 // formimidoyltetrahydrofolate cyclodeaminase activity // inferred from electronic annotation 1387878_at AW916644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916644 /DB_XREF=gi:8082374 /DB_XREF=EST347948 /CLONE=RGIDS81 /FEA=FLmRNA /CNT=68 /TID=Rn.55106.1 /TIER=Stack /STK=6 /UG=Rn.55106 /LL=24399 /UG_GENE=Glud1 /UG_TITLE=Glutamate dehydrogenase /FL=gb:NM_012570.1 AW916644 glutamate dehydrogenase 1 Glud1 24399 NM_012570 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006537 // glutamate biosynthetic process // not recorded /// 0006538 // glutamate catabolic process // not recorded /// 0006538 // glutamate catabolic process // traceable author statement /// 0007616 // long-term memory // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0019459 // glutamate deamidation // not recorded /// 0032024 // positive regulation of insulin secretion // inferred from electronic annotation /// 0032024 // positive regulation of insulin secretion // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004352 // glutamate dehydrogenase activity // inferred from direct assay /// 0004352 // glutamate dehydrogenase activity // not recorded /// 0004353 // glutamate dehydrogenase [NAD(P)+] activity // inferred from electronic annotation /// 0004353 // glutamate dehydrogenase [NAD(P)+] activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0043531 // ADP binding // not recorded /// 0070403 // NAD binding // not recorded /// 0070728 // leucine binding // not recorded 1387879_a_at AF090695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF090695.1 /DB_XREF=gi:4249669 /GEN=NAPOR-3 /FEA=FLmRNA /CNT=2 /TID=Rn.30004.2 /TIER=FL /STK=1 /UG=Rn.30004 /LL=29428 /DEF=Rattus norvegicus apoptosis-related RNA binding protein (NAPOR-3) mRNA, complete cds. /PROD=apoptosis-related RNA binding protein /FL=gb:AF090695.1 AF090695 CUG triplet repeat, RNA binding protein 2 Cugbp2 29428 NM_001083586 /// NM_017197 0006376 // mRNA splice site selection // inferred from electronic annotation /// 0006376 // mRNA splice site selection // not recorded /// 0006397 // mRNA processing // inferred from electronic annotation 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387880_at AI237598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237598 /DB_XREF=gi:4136342 /DB_XREF=EST234160 /CLONE=RPLDB29 /FEA=FLmRNA /CNT=12 /TID=Rn.30004.1 /TIER=Stack /STK=6 /UG=Rn.30004 /LL=29428 /UG_GENE=Cugbp2 /UG_TITLE=CUG triplet repeat, RNA-binding protein 2 /FL=gb:NM_017197.1 AI237598 CUG triplet repeat, RNA binding protein 2 Cugbp2 29428 NM_001083586 /// NM_017197 0006376 // mRNA splice site selection // inferred from electronic annotation /// 0006376 // mRNA splice site selection // not recorded /// 0006397 // mRNA processing // inferred from electronic annotation 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387881_at BF391696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391696 /DB_XREF=gi:11376550 /DB_XREF=UI-R-CA1-bct-d-07-0-UI.s1 /CLONE=UI-R-CA1-bct-d-07-0-UI /FEA=FLmRNA /CNT=8 /TID=Rn.42920.1 /TIER=Stack /STK=6 /UG=Rn.42920 /LL=60326 /UG_GENE=Kv8.1 /UG_TITLE=neuronal potassium channel alpha subunit /FL=gb:NM_021697.1 BF391696 potassium channel, subfamily V, member 1 Kcnv1 60326 NM_021697 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from direct assay /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1387882_at AI071565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071565 /DB_XREF=gi:3397780 /DB_XREF=UI-R-C1-ky-e-11-0-UI.s2 /CLONE=UI-R-C1-ky-e-11-0-UI /FEA=FLmRNA /CNT=42 /TID=Rn.19481.1 /TIER=Stack /STK=18 /UG=Rn.19481 /LL=117560 /UG_GENE=Klf9 /UG_TITLE=Kruppel-like factor 9 /FL=gb:D12769.1 gb:NM_057211.1 AI071565 Kruppel-like factor 9 Klf9 117560 NM_057211 0006350 // transcription // inferred from electronic annotation /// 0007566 // embryo implantation // inferred from electronic annotation /// 0007566 // embryo implantation // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0050847 // progesterone receptor signaling pathway // inferred from electronic annotation /// 0050847 // progesterone receptor signaling pathway // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1387883_a_at BG668902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668902 /DB_XREF=gi:13890824 /DB_XREF=DRN03A01 /CLONE=DRN03A01 /FEA=mRNA /CNT=76 /TID=Rn.2605.2 /TIER=Stack /STK=38 /UG=Rn.2605 /LL=81814 /UG_GENE=Tmsb4x /UG_TITLE=thymosin beta-4 BG668902 thymosin beta 4, X-linked Tmsb4x 81814 NM_031136 0001649 // osteoblast differentiation // inferred from expression pattern /// 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030334 // regulation of cell migration // not recorded /// 0042989 // sequestering of actin monomers // traceable author statement /// 0042989 // sequestering of actin monomers // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387884_at AI011191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011191 /DB_XREF=gi:3225023 /DB_XREF=EST205642 /CLONE=ROVAQ61 /FEA=FLmRNA /CNT=43 /TID=Rn.1276.1 /TIER=Stack /STK=12 /UG=Rn.1276 /LL=29672 /UG_GENE=Psma5 /UG_TITLE=proteasome (prosome, macropain) subunit, alpha type 5 /FL=gb:NM_017282.1 AI011191 proteasome (prosome, macropain) subunit, alpha type 5 Psma5 29672 NM_017282 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005839 // proteasome core complex // inferred from electronic annotation /// 0019773 // proteasome core complex, alpha-subunit complex // inferred from electronic annotation 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387885_at BE110597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110597 /DB_XREF=gi:8502702 /DB_XREF=UI-R-BJ1-avt-h-02-0-UI.s1 /CLONE=UI-R-BJ1-avt-h-02-0-UI /FEA=FLmRNA /CNT=27 /TID=Rn.2306.1 /TIER=Stack /STK=11 /UG=Rn.2306 /LL=29558 /UG_GENE=Fcgrt /UG_TITLE=Fc receptor, IgG, alpha chain transporter /FL=gb:NM_033351.1 gb:M35495.1 BE110597 Fc fragment of IgG, receptor, transporter, alpha Fcgrt 29558 NM_033351 0006955 // immune response // inferred from electronic annotation /// 0006959 // humoral immune response // traceable author statement /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0019770 // IgG receptor activity // traceable author statement /// 0019864 // IgG binding // inferred from electronic annotation /// 0030881 // beta-2-microglobulin binding // inferred from direct assay 1387886_at AI011747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011747 /DB_XREF=gi:3225579 /DB_XREF=EST206198 /CLONE=ROVAZ62 /FEA=FLmRNA /CNT=17 /TID=Rn.40310.1 /TIER=Stack /STK=11 /UG=Rn.40310 /LL=84400 /UG_GENE=Prelp /UG_TITLE=proline arginine-rich end leucine-rich repeat protein /FL=gb:AF163569.1 gb:NM_053385.1 AI011747 proline/arginine-rich end leucine-rich repeat protein Prelp 84400 NM_053385 0007569 // cell aging // inferred from electronic annotation /// 0007569 // cell aging // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from direct assay 1387887_at AA874811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA874811 /DB_XREF=gi:4230694 /DB_XREF=UI-R-E0-bw-h-04-0-UI.s1 /CLONE=UI-R-E0-bw-h-04-0-UI /FEA=FLmRNA /CNT=25 /TID=Rn.37556.1 /TIER=Stack /STK=10 /UG=Rn.37556 /LL=65043 /UG_GENE=Rpl14 /UG_TITLE=ribosomal protein L14 /FL=gb:NM_022949.1 AA874811 ribosomal protein L14 Rpl14 65043 NM_022949 0006364 // rRNA processing // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0042273 // ribosomal large subunit biogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387888_at AA799768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799768 /DB_XREF=gi:2862723 /DB_XREF=EST189265 /CLONE=RHEAF12 /FEA=FLmRNA /CNT=110 /TID=Rn.3381.1 /TIER=Stack /STK=9 /UG=Rn.3381 /LL=81772 /UG_GENE=Rps9 /UG_TITLE=mRNA for ribosomal protein S9 /FL=gb:NM_031108.1 AA799768 ribosomal protein S9 Rps9 81772 NM_031108 0006412 // translation // inferred from electronic annotation /// 0006412 // translation // not recorded /// 0006414 // translational elongation // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019843 // rRNA binding // inferred from electronic annotation /// 0045182 // translation regulator activity // not recorded 1387889_at AI233882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233882 /DB_XREF=gi:3817762 /DB_XREF=EST230570 /CLONE=RLUCS31 /FEA=FLmRNA /CNT=16 /TID=Rn.6912.1 /TIER=Stack /STK=9 /UG=Rn.6912 /LL=171049 /UG_GENE=Folr1 /UG_TITLE=folate receptor 1 (adult) /FL=gb:AF219904.1 gb:NM_133527.1 AI233882 folate receptor 1 (adult) Folr1 171049 NM_133527 0015884 // folic acid transport // traceable author statement /// 0046655 // folic acid metabolic process // inferred from electronic annotation /// 0046655 // folic acid metabolic process // not recorded 0005903 // brush border // inferred from direct assay /// 0046658 // anchored to plasma membrane // inferred from direct assay 0005542 // folic acid binding // traceable author statement /// 0008517 // folic acid transporter activity // traceable author statement 1387890_at AI229633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229633 /DB_XREF=gi:3813520 /DB_XREF=EST226328 /CLONE=REMCJ67 /FEA=FLmRNA /CNT=41 /TID=Rn.34942.1 /TIER=Stack /STK=8 /UG=Rn.34942 /LL=25348 /UG_GENE=Rps29 /UG_TITLE=Ribosomal protein S29 /FL=gb:NM_012876.1 AI229633 ribosomal protein S29 Rps29 25348 NM_012876 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // not recorded /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0022627 // cytosolic small ribosomal subunit // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1387891_at BI282076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282076 /DB_XREF=gi:14932462 /DB_XREF=UI-R-CU0s-cbw-c-05-0-UI.s1 /CLONE=UI-R-CU0s-cbw-c-05-0-UI /FEA=FLmRNA /CNT=29 /TID=Rn.17958.1 /TIER=Stack /STK=8 /UG=Rn.17958 /LL=85274 /UG_GENE=Prdx4 /UG_TITLE=peroxiredoxin 4 /FL=gb:AF106945.1 gb:NM_053512.1 BI282076 peroxiredoxin 4 Prdx4 85274 NM_053512 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0004601 // peroxidase activity // inferred from electronic annotation /// 0016209 // antioxidant activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0051920 // peroxiredoxin activity // inferred from electronic annotation 1387892_at BI285440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285440 /DB_XREF=gi:14939080 /DB_XREF=UI-R-DD0-caa-b-05-0-UI.s1 /CLONE=UI-R-DD0-caa-b-05-0-UI /FEA=FLmRNA /CNT=130 /TID=Rn.2458.1 /TIER=Stack /STK=83 /UG=Rn.2458 /UG_TITLE=Rattus norvegicus mRNA for class I beta-tubulin, complete cds /FL=gb:AB011679.1 BI285440 tubulin, beta 5 Tubb5 29214 NM_173102 0001764 // neuron migration // inferred from electronic annotation /// 0007017 // microtubule-based process // not recorded /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007067 // mitosis // inferred from mutant phenotype /// 0007411 // axon guidance // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from mutant phenotype /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0032720 // negative regulation of tumor necrosis factor production // inferred from electronic annotation /// 0051225 // spindle assembly // inferred from electronic annotation /// 0051225 // spindle assembly // not recorded /// 0051258 // protein polymerization // inferred from electronic annotation /// 0070914 // UV-damage excision repair // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0005874 // microtubule // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0004980 // melanocyte-stimulating hormone receptor activity // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // not recorded /// 0005200 // structural constituent of cytoskeleton // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0042277 // peptide binding // inferred from physical interaction /// 0042288 // MHC class I protein binding // inferred from electronic annotation /// 0042288 // MHC class I protein binding // not recorded 1387893_at D88250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D88250.1 /DB_XREF=gi:3080541 /FEA=FLmRNA /CNT=26 /TID=Rn.4037.1 /TIER=FL+Stack /STK=21 /UG=Rn.4037 /DEF=Rattus norvegicus mRNA for serine protease, complete cds. /PROD=serine protease /FL=gb:D88250.1 D88250 complement component 1, s subcomponent C1s 192262 NM_138900 0006508 // proteolysis // inferred from electronic annotation /// 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0010001 // glial cell differentiation // inferred from expression pattern /// 0045087 // innate immune response // inferred from electronic annotation /// 0051591 // response to cAMP // inferred from expression pattern 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387894_at L22761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L22761.1 /DB_XREF=gi:437669 /GEN=GATA-GT2 /FEA=FLmRNA /CNT=67 /TID=Rn.26251.1 /TIER=FL+Stack /STK=19 /UG=Rn.26251 /LL=54254 /DEF=Rat DNA binding protein (GATA-GT2) mRNA, complete cds. /PROD=DNA binding protein /FL=gb:L22761.1 L22761 GATA binding protein 4 Gata4 54254 NM_144730 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0007275 // multicellular organismal development // traceable author statement /// 0007507 // heart development // not recorded /// 0007507 // heart development // traceable author statement /// 0007507 // heart development // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0030513 // positive regulation of BMP signaling pathway // inferred from direct assay /// 0035050 // embryonic heart tube development // not recorded /// 0035050 // embryonic heart tube development // inferred from electronic annotation /// 0035054 // embryonic heart tube anterior/posterior pattern formation // inferred from electronic annotation /// 0035054 // embryonic heart tube anterior/posterior pattern formation // not recorded /// 0043627 // response to estrogen stimulus // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048557 // embryonic digestive tract morphogenesis // not recorded /// 0048598 // embryonic morphogenesis // not recorded /// 0048598 // embryonic morphogenesis // inferred from electronic annotation /// 0048617 // embryonic foregut morphogenesis // inferred from electronic annotation /// 0048617 // embryonic foregut morphogenesis // not recorded /// 0060043 // regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060043 // regulation of cardiac muscle cell proliferation // not recorded /// 0060395 // SMAD protein signal transduction // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // not recorded /// 0060413 // atrial septum morphogenesis // inferred from electronic annotation /// 0060413 // atrial septum morphogenesis // not recorded /// 0060575 // intestinal epithelial cell differentiation // inferred from electronic annotation /// 0060575 // intestinal epithelial cell differentiation // not recorded /// 0071371 // cellular response to gonadotropin stimulus // not recorded /// 0071371 // cellular response to gonadotropin stimulus // inferred from electronic annotation /// 0071372 // cellular response to follicle-stimulating hormone stimulus // inferred from electronic annotation /// 0071372 // cellular response to follicle-stimulating hormone stimulus // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003704 // specific RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003704 // specific RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from direct assay /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // traceable author statement /// 0010843 // promoter binding // inferred from direct assay /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0033613 // transcription activator binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from mutant phenotype /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1387895_s_at U05341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U05341.1 /DB_XREF=gi:468033 /FEA=FLmRNA /CNT=22 /TID=Rn.9262.1 /TIER=FL+Stack /STK=19 /UG=Rn.9262 /LL=64515 /UG_GENE=Cdc20 /DEF=Rattus norvegicus p55CDC mRNA, complete cds. /PROD=p55CDC /FL=gb:U05341.1 U05341 cell division cycle 20 homolog (S. cerevisiae) Cdc20 64515 NM_171993 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0050773 // regulation of dendrite development // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0005654 // nucleoplasm // not recorded /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0019899 // enzyme binding // not recorded 1387896_at M62763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M62763.1 /DB_XREF=gi:202552 /FEA=FLmRNA /CNT=40 /TID=Rn.31887.1 /TIER=FL /STK=4 /UG=Rn.31887 /LL=25541 /UG_GENE=Scp2 /DEF=Rat 60 kDa protein and non-specific lipid transfer protein mRNA, complete cds. /PROD=60 kDa protein /FL=gb:M62763.1 gb:M34728.1 M62763 podocan /// sterol carrier protein 2 Podn /// Scp2 25541 /// 313483 NM_138508 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0007031 // peroxisome organization // not recorded /// 0008152 // metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation /// 0032934 // sterol binding // inferred from electronic annotation /// 0033814 // propanoyl-CoA C-acyltransferase activity // inferred from electronic annotation 1387897_at L16532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L16532.1 /DB_XREF=gi:294526 /GEN=CNPII /FEA=FLmRNA /CNT=21 /TID=Rn.31762.1 /TIER=FL+Stack /STK=17 /UG=Rn.31762 /LL=25275 /DEF=Rattus norvegicus (clone pCNPII) 2,3-cyclic nucleotide 3-phosphodiesterase (CNPII) mRNA, complete cds. /PROD=2,3-cyclic nucleotide 3-phosphodiesterase /FL=gb:L16532.1 L16532 2',3'-cyclic nucleotide 3' phosphodiesterase Cnp 25275 NM_012809 0000226 // microtubule cytoskeleton organization // inferred from mutant phenotype /// 0001906 // cell killing // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0008152 // metabolic process // not recorded /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0009214 // cyclic nucleotide catabolic process // inferred from electronic annotation /// 0016070 // RNA metabolic process // inferred from electronic annotation 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031224 // intrinsic to membrane // inferred from mutant phenotype /// 0042470 // melanosome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004113 // 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity // not recorded /// 0004113 // 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity // traceable author statement /// 0004113 // 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387898_at D29960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D29960.1 /DB_XREF=gi:1753175 /FEA=FLmRNA /CNT=19 /TID=Rn.3201.1 /TIER=FL+Stack /STK=17 /UG=Rn.3201 /DEF=Rattus norvegicus mRNA for alphaB crystallin-related protein, complete cds. /PROD=alphaB crystallin-related protein /FL=gb:D29960.1 D29960 heat shock protein, alpha-crystallin-related, B6 Hspb6 192245 NM_138887 0006937 // regulation of muscle contraction // inferred from expression pattern /// 0006950 // response to stress // inferred from electronic annotation /// 0009408 // response to heat // inferred from electronic annotation 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0005212 // structural constituent of eye lens // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // inferred from physical interaction 1387899_at U52102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U52102.1 /DB_XREF=gi:1399537 /FEA=FLmRNA /CNT=22 /TID=Rn.11379.1 /TIER=FL+Stack /STK=16 /UG=Rn.11379 /LL=25415 /UG_GENE=Crmp1 /DEF=Rattus norvegicus rCRMP-1 mRNA, complete cds. /PROD=rCRMP-1 /FL=gb:U52102.1 gb:U52095.1 U52102 collapsin response mediator protein 1 Crmp1 25415 NM_012932 0048666 // neuron development // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0043025 // neuronal cell body // not recorded 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation 1387900_at D82928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D82928.1 /DB_XREF=gi:1620878 /FEA=FLmRNA /CNT=27 /TID=Rn.10598.1 /TIER=FL+Stack /STK=15 /UG=Rn.10598 /DEF=Rat mRNA for phosphatidylinositol synthase, complete cds. /PROD=phosphatidylinositol synthase /FL=gb:D82928.1 D82928 CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) Cdipt 192260 NM_138899 0006661 // phosphatidylinositol biosynthetic process // inferred from direct assay /// 0006661 // phosphatidylinositol biosynthetic process // traceable author statement /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0046341 // CDP-diacylglycerol metabolic process // inferred from direct assay 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003881 // CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity // inferred from direct assay /// 0003881 // CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity // inferred from genetic interaction /// 0003881 // CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity // inferred from electronic annotation /// 0005529 // sugar binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016780 // phosphotransferase activity, for other substituted phosphate groups // inferred from electronic annotation /// 0019992 // diacylglycerol binding // inferred from physical interaction /// 0030145 // manganese ion binding // inferred from direct assay /// 0043178 // alcohol binding // inferred from physical interaction 1387901_at L19180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L19180.1 /DB_XREF=gi:310201 /FEA=FLmRNA /CNT=22 /TID=Rn.25722.2 /TIER=FL+Stack /STK=15 /UG=Rn.25722 /LL=25529 /UG_GENE=Ptprd /DEF=Rat receptor-linked protein tyrosine phosphatase (PTP-P1) mRNA, complete cds. /PROD=receptor-linked protein tyrosine phosphatase /FL=gb:L19180.1 L19180 protein tyrosine phosphatase, receptor type, S Ptprs 25529 NM_019140 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1387902_a_at L22655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L22655.1 /DB_XREF=gi:1220489 /FEA=FLmRNA /CNT=19 /TID=Rn.10519.1 /TIER=FL+Stack /STK=15 /UG=Rn.10519 /DEF=Rat anti-acetylcholine receptor antibody gene, kappa-chain, VJC region, complete cds. /PROD=Ig kappa chain /FL=gb:L22655.1 L22655 region containing similar to NGF-binding Ig light chain; similar to IG KAPPA CHAIN V-V REGION K2 PRECURSOR LOC683399 683399 XM_002726417 /// XM_002726418 1387903_at D32249 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D32249.1 /DB_XREF=gi:971274 /GEN=Neurodap1 /FEA=FLmRNA /CNT=38 /TID=Rn.18446.1 /TIER=FL+Stack /STK=14 /UG=Rn.18446 /DEF=Rattus norvegicus mRNA for neurodegeneration associated protein 1, complete cds. /PROD=neurodegeneration associated protein 1 /FL=gb:D32249.1 D32249 praja 2, RING-H2 motif containing Pja2 192256 NM_138896 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387904_at AB049151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB049151.1 /DB_XREF=gi:10280995 /FEA=FLmRNA /CNT=21 /TID=Rn.16751.1 /TIER=FL+Stack /STK=14 /UG=Rn.16751 /LL=50560 /UG_GENE=Itpk6 /DEF=Rattus norvegicus mRNA for inositol hexakisphosphate kinase, complete cds. /PROD=inositol hexakisphosphate kinase /FL=gb:AB049151.1 AB049151 inositol hexakisphosphate kinase 1 Ip6k1 50560 NM_053316 0046854 // phosphoinositide phosphorylation // not recorded /// 0046854 // phosphoinositide phosphorylation // inferred from sequence or structural similarity /// 0046854 // phosphoinositide phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004428 // inositol or phosphatidylinositol kinase activity // inferred from electronic annotation /// 0004428 // inositol or phosphatidylinositol kinase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008440 // inositol trisphosphate 3-kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387905_at AB062135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB062135.1 /DB_XREF=gi:14192846 /GEN=Jdp1 /FEA=FLmRNA /CNT=17 /TID=Rn.9583.2 /TIER=FL+Stack /STK=14 /UG=Rn.9583 /LL=60462 /DEF=Rattus norvegicus Jdp1 mRNA for J domain protein 1, complete cds. /PROD=J domain protein 1 /FL=gb:AB062135.1 AB062135 DnaJ (Hsp40) homolog, subfamily C, member 12 Dnajc12 619393 NM_001034032 0031072 // heat shock protein binding // inferred from electronic annotation 1387906_a_at AF107845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF107845.1 /DB_XREF=gi:4206777 /GEN=XLalphas /FEA=FLmRNA /CNT=14 /TID=Rn.31.2 /TIER=FL+Stack /STK=14 /UG=Rn.31 /LL=24896 /DEF=Rattus norvegicus neuroendocrine-specific Golgi protein p55 (XLalphas) alternatively spliced mRNA, complete cds. /PROD=neuroendocrine-specific Golgi protein p55 /FL=gb:AF107845.1 AF107845 GNAS complex locus Gnas 24896 NM_001024823 /// NM_001159653 /// NM_001159656 /// NM_019132 /// NM_021845 0001501 // skeletal system development // not recorded /// 0001958 // endochondral ossification // not recorded /// 0006112 // energy reserve metabolic process // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from direct assay /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007191 // activation of adenylate cyclase activity by dopamine receptor signaling pathway // not recorded /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0009791 // post-embryonic development // not recorded /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0040032 // post-embryonic body morphogenesis // not recorded /// 0042493 // response to drug // not recorded /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045672 // positive regulation of osteoclast differentiation // not recorded /// 0048701 // embryonic cranial skeleton morphogenesis // not recorded /// 0051216 // cartilage development // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // inferred from direct assay /// 0005834 // heterotrimeric G-protein complex // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031224 // intrinsic to membrane // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0032588 // trans-Golgi network membrane // not recorded /// 0042383 // sarcolemma // inferred from direct assay /// 0044424 // intracellular part // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0031852 // mu-type opioid receptor binding // inferred from direct assay /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction /// 0042802 // identical protein binding // not recorded 1387907_at J05510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J05510.1 /DB_XREF=gi:204673 /FEA=FLmRNA /CNT=24 /TID=Rn.2135.1 /TIER=FL+Stack /STK=13 /UG=Rn.2135 /UG_TITLE=Rat inositol-1,4,5-triphosphate receptor mRNA, complete cds /DEF=Rat inositol-1,4,5-triphosphate receptor mRNA, complete cds. /FL=gb:J05510.1 J05510 inositol 1,4,5-triphosphate receptor, type 1 Itpr1 25262 NM_001007235 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0007165 // signal transduction // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0032469 // endoplasmic reticulum calcium ion homeostasis // inferred from electronic annotation /// 0032469 // endoplasmic reticulum calcium ion homeostasis // not recorded /// 0050882 // voluntary musculoskeletal movement // inferred from electronic annotation /// 0050882 // voluntary musculoskeletal movement // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005635 // nuclear envelope // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005637 // nuclear inner membrane // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005955 // calcineurin complex // inferred from electronic annotation /// 0005955 // calcineurin complex // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // not recorded /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // not recorded /// 0030667 // secretory granule membrane // inferred from direct assay /// 0031088 // platelet dense granule membrane // inferred from electronic annotation /// 0031088 // platelet dense granule membrane // not recorded /// 0031094 // platelet dense tubular network // inferred from electronic annotation /// 0031094 // platelet dense tubular network // not recorded /// 0031095 // platelet dense tubular network membrane // not recorded /// 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded /// 0045121 // membrane raft // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005220 // inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008095 // inositol-1,4,5-trisphosphate receptor activity // inferred from electronic annotation /// 0008095 // inositol-1,4,5-trisphosphate receptor activity // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // not recorded 1387908_at AF239157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF239157.1 /DB_XREF=gi:7230767 /GEN=Dexras1 /FEA=FLmRNA /CNT=18 /TID=Rn.7500.1 /TIER=FL+Stack /STK=12 /UG=Rn.7500 /LL=64455 /DEF=Rattus norvegicus DEXRAS1 (Dexras1) mRNA, complete cds. /PROD=DEXRAS1 /FL=gb:AF239157.1 AF239157 RAS, dexamethasone-induced 1 Rasd1 64455 XM_001077321 /// XM_340809 0007165 // signal transduction // inferred from electronic annotation /// 0007263 // nitric oxide mediated signal transduction // inferred from direct assay /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation 1387909_at U94904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U94904.1 /DB_XREF=gi:2232008 /FEA=FLmRNA /CNT=32 /TID=Rn.11316.1 /TIER=FL+Stack /STK=12 /UG=Rn.11316 /DEF=Rattus norvegicus thyroid hormone responsive protein mRNA, complete cds. /PROD=thyroid hormone responsive protein /FL=gb:U94904.1 U94904 abl-interactor 2 Abi2 286928 NM_173143 0006928 // cellular component movement // not recorded /// 0007611 // learning or memory // not recorded /// 0016358 // dendrite development // not recorded /// 0016477 // cell migration // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0043010 // camera-type eye development // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005913 // cell-cell adherens junction // not recorded /// 0030027 // lamellipodium // not recorded /// 0030175 // filopodium // not recorded /// 0030425 // dendrite // not recorded 0017124 // SH3 domain binding // not recorded /// 0070064 // proline-rich region binding // not recorded 1387910_at AB019256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB019256.1 /DB_XREF=gi:4587117 /FEA=FLmRNA /CNT=28 /TID=Rn.12633.1 /TIER=FL+Stack /STK=12 /UG=Rn.12633 /LL=171345 /UG_GENE=Epb4.1l1 /DEF=Rattus norvegicus mRNA for brain 4.1(S), complete cds. /PROD=rat brain 4.1(S) /FL=gb:AB019256.1 AB019256 erythrocyte protein band 4.1-like 1 Epb4.1l1 59317 NM_021681 /// NM_172090 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0019898 // extrinsic to membrane // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 1387911_at L10416 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L10416.1 /DB_XREF=gi:310207 /FEA=FLmRNA /CNT=19 /TID=Rn.2542.2 /TIER=FL+Stack /STK=11 /UG=Rn.2542 /LL=25533 /UG_GENE=Rabggtb /DEF=Rat rab geranylgeranyl transferase beta-subunit mRNA, complete cds. /PROD=rab geranylgeranyl transferase beta subunit /FL=gb:L10416.1 L10416 Rab geranylgeranyltransferase, beta subunit Rabggtb 25533 NM_138708 0018344 // protein geranylgeranylation // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004659 // prenyltransferase activity // inferred from electronic annotation /// 0004663 // Rab geranylgeranyltransferase activity // inferred from direct assay /// 0004663 // Rab geranylgeranyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387912_at U25746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U25746.1 /DB_XREF=gi:897914 /FEA=FLmRNA /CNT=24 /TID=Rn.3436.1 /TIER=FL+Stack /STK=11 /UG=Rn.3436 /DEF=Rattus norvegicus RNA helicase with arginine-serine-rich domain mRNA, complete cds. /PROD=RNA helicase /FL=gb:U25746.1 U25746 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 Ddx46 245957 NM_139098 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0015030 // Cajal body // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387913_at U48220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U48220.1 /DB_XREF=gi:1200517 /FEA=FLmRNA /CNT=19 /TID=Rn.26060.1 /TIER=FL /STK=4 /UG=Rn.26060 /LL=171522 /UG_GENE=Cyp2d18 /DEF=Rattus norvegicus cytochrome P450 2D18 mRNA, complete cds. /PROD=cytochrome P450 2D18 /FL=gb:M22331.1 gb:U48220.1 gb:AB008425.1 gb:U48219.1 U48220 cytochrome P450, family 2, subfamily d, polypeptide 4 Cyp2d4 171522 NM_138515 0008202 // steroid metabolic process // not recorded /// 0009804 // coumarin metabolic process // not recorded /// 0009820 // alkaloid metabolic process // not recorded /// 0009822 // alkaloid catabolic process // not recorded /// 0009892 // negative regulation of metabolic process // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0016098 // monoterpenoid metabolic process // not recorded /// 0017144 // drug metabolic process // inferred from direct assay /// 0017144 // drug metabolic process // not recorded /// 0019369 // arachidonic acid metabolic process // inferred from direct assay /// 0033076 // isoquinoline alkaloid metabolic process // not recorded /// 0042417 // dopamine metabolic process // inferred from direct assay /// 0042737 // drug catabolic process // not recorded /// 0046483 // heterocycle metabolic process // not recorded /// 0051100 // negative regulation of binding // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded /// 0070989 // oxidative demethylation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from direct assay /// 0004497 // monooxygenase activity // not recorded /// 0004497 // monooxygenase activity // traceable author statement /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004509 // steroid 21-monooxygenase activity // inferred from mutant phenotype /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008144 // drug binding // not recorded /// 0008391 // arachidonic acid monooxygenase activity // inferred from direct assay /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0020037 // heme binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1387914_at M73231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M73231.1 /DB_XREF=gi:205939 /GEN=CYP27 /FEA=FLmRNA /CNT=13 /TID=Rn.34396.2 /TIER=FL+Stack /STK=11 /UG=Rn.34396 /LL=24794 /DEF=Sprague-Dawley CYP 27 mRNA, complete cds. /PROD=P-450c2725 /FL=gb:M73231.1 gb:M38566.1 M73231 cytochrome P450, family 27, subfamily a, polypeptide 1 Cyp27a1 301517 NM_178847 0006706 // steroid catabolic process // traceable author statement /// 0008203 // cholesterol metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005740 // mitochondrial envelope // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008395 // steroid hydroxylase activity // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0030343 // vitamin D3 25-hydroxylase activity // inferred from direct assay /// 0031073 // cholesterol 26-hydroxylase activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047749 // cholestanetriol 26-monooxygenase activity // inferred from electronic annotation 1387915_at AF367467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF367467.1 /DB_XREF=gi:18104443 /FEA=FLmRNA /CNT=24 /TID=Rn.4197.1 /TIER=FL+Stack /STK=10 /UG=Rn.4197 /DEF=Rattus norvegicus Ratsg2 mRNA, complete cds. /PROD=Ratsg2 /FL=gb:AF367467.1 AF367467 selenoprotein S Sels 286900 NM_173120 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0006983 // ER overload response // inferred from electronic annotation /// 0006983 // ER overload response // not recorded /// 0009749 // response to glucose stimulus // inferred from electronic annotation /// 0009749 // response to glucose stimulus // not recorded /// 0030433 // ER-associated protein catabolic process // inferred from electronic annotation /// 0030433 // ER-associated protein catabolic process // not recorded /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // not recorded /// 0030970 // retrograde protein transport, ER to cytosol // inferred from electronic annotation /// 0030970 // retrograde protein transport, ER to cytosol // not recorded /// 0032715 // negative regulation of interleukin-6 production // inferred from electronic annotation /// 0032715 // negative regulation of interleukin-6 production // not recorded /// 0032720 // negative regulation of tumor necrosis factor production // inferred from electronic annotation /// 0032720 // negative regulation of tumor necrosis factor production // not recorded /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0045454 // cell redox homeostasis // not recorded /// 0051775 // response to redox state // inferred from electronic annotation /// 0051775 // response to redox state // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded /// 0034361 // very-low-density lipoprotein particle // inferred from electronic annotation /// 0034361 // very-low-density lipoprotein particle // not recorded /// 0034362 // low-density lipoprotein particle // inferred from electronic annotation /// 0034362 // low-density lipoprotein particle // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008430 // selenium binding // inferred from electronic annotation /// 0016209 // antioxidant activity // inferred from electronic annotation /// 0016209 // antioxidant activity // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded 1387916_at U39208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U39208.1 /DB_XREF=gi:1146439 /GEN=CYP4F6 /FEA=FLmRNA /CNT=13 /TID=Rn.11269.1 /TIER=FL+Stack /STK=10 /UG=Rn.11269 /DEF=Rattus norvegicus cytochrome P450 4F6 (CYP4F6) mRNA, complete cds. /PROD=cytochrome P450 4F6 /FL=gb:U39208.1 U39208 cytochrome P450, family 4, subfamily f, polypeptide 6 Cyp4f6 266689 NM_153318 0000038 // very long-chain fatty acid metabolic process // not recorded /// 0001676 // long-chain fatty acid metabolic process // not recorded /// 0006691 // leukotriene metabolic process // inferred from mutant phenotype /// 0006954 // inflammatory response // traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0018685 // alkane 1-monooxygenase activity // not recorded /// 0019825 // oxygen binding // not recorded /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1387917_at U19614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U19614.1 /DB_XREF=gi:769854 /GEN=LAP1C /FEA=FLmRNA /CNT=12 /TID=Rn.11373.1 /TIER=FL+Stack /STK=10 /UG=Rn.11373 /DEF=Rattus norvegicus lamina-associated polypeptide 1C (LAP1C) mRNA, complete cds. /PROD=lamina-associated polypeptide 1C /FL=gb:U19614.1 U19614 torsin A interacting protein 1 Tor1aip1 246314 NM_145092 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay /// 0005635 // nuclear envelope // not recorded /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005521 // lamin binding // inferred from direct assay 1387918_at BI295970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295970 /DB_XREF=gi:14959948 /DB_XREF=UI-R-DK0-cfc-h-06-0-UI.s1 /CLONE=UI-R-DK0-cfc-h-06-0-UI /FEA=FLmRNA /CNT=32 /TID=Rn.24727.1 /TIER=Stack /STK=11 /UG=Rn.24727 /UG_TITLE=R.norvegicus mRNA for tropomyosin isoform 6 /FL=gb:L24775.1 BI295970 tropomyosin 3, gamma Tpm3 117557 NM_057208 /// NM_173111 0007420 // brain development // inferred from expression pattern 0002102 // podosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1387919_at U41803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U41803.1 /DB_XREF=gi:2654401 /FEA=FLmRNA /CNT=25 /TID=Rn.8570.1 /TIER=FL+Stack /STK=9 /UG=Rn.8570 /LL=64476 /UG_GENE=LOC64476 /DEF=Rattus norvegicus hypertension-related protein mRNA, complete cds. /PROD=hypertension-related protein /FL=gb:U41803.1 U41803 mitofusin 2 Mfn2 64476 NM_130894 0001825 // blastocyst formation // not recorded /// 0006626 // protein targeting to mitochondrion // not recorded /// 0006626 // protein targeting to mitochondrion // inferred from sequence or structural similarity /// 0007006 // mitochondrial membrane organization // not recorded /// 0007006 // mitochondrial membrane organization // inferred from sequence or structural similarity /// 0007050 // cell cycle arrest // inferred from direct assay /// 0008053 // mitochondrial fusion // inferred from mutant phenotype /// 0008053 // mitochondrial fusion // not recorded /// 0008053 // mitochondrial fusion // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0046580 // negative regulation of Ras protein signal transduction // not recorded /// 0048593 // camera-type eye morphogenesis // not recorded /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from direct assay /// 0051646 // mitochondrion localization // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0015630 // microtubule cytoskeleton // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031306 // intrinsic to mitochondrial outer membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from mutant phenotype /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from mutant phenotype /// 0005525 // GTP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0051020 // GTPase binding // inferred from physical interaction 1387920_at M57547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M57547.1 /DB_XREF=gi:205298 /GEN=ER alpha-mannosidase /FEA=FLmRNA /CNT=14 /TID=Rn.11301.1 /TIER=FL+Stack /STK=9 /UG=Rn.11301 /DEF=Rat endoplasmic reticulum alpha-mannosidase mRNA, complete cds. /PROD=ER alpha-mannosidase /FL=gb:M57547.1 M57547 mannosidase, alpha, class 2C, member 1 Man2c1 246136 NM_139256 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006013 // mannose metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // non-traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004559 // alpha-mannosidase activity // inferred from direct assay /// 0004559 // alpha-mannosidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0015923 // mannosidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387921_at AB032932 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB032932.1 /DB_XREF=gi:13516491 /GEN=npukp68 /FEA=FLmRNA /CNT=17 /TID=Rn.36088.1 /TIER=FL+Stack /STK=9 /UG=Rn.36088 /DEF=Rattus norvegicus mRNA for nuclear protein UKp68, complete cds. /PROD=nuclear protein UKp68 /FL=gb:AB032932.1 AB032932 zinc finger CCCH type containing 14 Zc3h14 192359 NM_001033951 /// NM_138920 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387922_at AF109674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF109674.1 /DB_XREF=gi:4324681 /GEN=Lgl1 /FEA=FLmRNA /CNT=11 /TID=Rn.4346.1 /TIER=FL+Stack /STK=9 /UG=Rn.4346 /LL=171547 /DEF=Rattus norvegicus late gestation lung protein 1 (Lgl1) mRNA, complete cds. /PROD=late gestation lung protein 1 /FL=gb:AF109674.1 AF109674 cysteine-rich secretory protein LCCL domain containing 2 Crispld2 171547 NM_138518 0030324 // lung development // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation 1387923_at AF054586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF054586.1 /DB_XREF=gi:2996031 /GEN=BFP /FEA=FLmRNA /CNT=14 /TID=Rn.7544.1 /TIER=FL+Stack /STK=9 /UG=Rn.7544 /LL=24916 /DEF=Rattus norvegicus brain finger protein (BFP) mRNA, complete cds. /PROD=brain finger protein /FL=gb:AF054586.1 AF054586 ring finger protein 112 Rnf112 24916 NM_138613 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // non-traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 1387924_at AF254801 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF254801.1 /DB_XREF=gi:7689360 /FEA=FLmRNA /CNT=11 /TID=Rn.20670.1 /TIER=FL+Stack /STK=9 /UG=Rn.20670 /DEF=Rattus norvegicus brain-enriched SH3-domain protein mRNA, complete cds. /PROD=brain-enriched SH3-domain protein /FL=gb:AF254801.1 AF254801 neuronal guanine nucleotide exchange factor Ngef 246217 NM_001136241 0006915 // apoptosis // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0009987 // cellular process // inferred from electronic annotation /// 0009987 // cellular process // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1387925_at U07202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U07202.1 /DB_XREF=gi:460632 /FEA=FLmRNA /CNT=15 /TID=Rn.11172.1 /TIER=FL+Stack /STK=8 /UG=Rn.11172 /LL=25612 /UG_GENE=Asns /DEF=Rattus norvegicus asparagine synthetase mRNA, predominant transcript, complete cds. /PROD=asparagine synthetase /FL=gb:U07202.1 gb:U07201.1 U07202 asparagine synthetase Asns 25612 NM_013079 0001889 // liver development // inferred from expression pattern /// 0006520 // cellular amino acid metabolic process // inferred from expression pattern /// 0006529 // asparagine biosynthetic process // inferred from direct assay /// 0006529 // asparagine biosynthetic process // not recorded /// 0006529 // asparagine biosynthetic process // inferred from electronic annotation /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009416 // response to light stimulus // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009636 // response to toxin // inferred from expression pattern /// 0031427 // response to methotrexate // inferred from expression pattern /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032354 // response to follicle-stimulating hormone stimulus // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0042149 // cellular response to glucose starvation // inferred from expression pattern /// 0042149 // cellular response to glucose starvation // not recorded /// 0042149 // cellular response to glucose starvation // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0045931 // positive regulation of mitotic cell cycle // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005625 // soluble fraction // not recorded /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004066 // asparagine synthase (glutamine-hydrolyzing) activity // inferred from direct assay /// 0004066 // asparagine synthase (glutamine-hydrolyzing) activity // not recorded /// 0004066 // asparagine synthase (glutamine-hydrolyzing) activity // traceable author statement /// 0004066 // asparagine synthase (glutamine-hydrolyzing) activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0048037 // cofactor binding // inferred from direct assay 1387926_at AB052846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB052846.1 /DB_XREF=gi:11990471 /GEN=C5D /FEA=FLmRNA /CNT=15 /TID=Rn.18741.1 /TIER=FL+Stack /STK=8 /UG=Rn.18741 /LL=114100 /DEF=Rattus norvegicus C5D mRNA for sterol C5-desaturase, complete cds. /PROD=sterol C5-desaturase /FL=gb:AB052846.1 AB052846 sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like Sc5dl 114100 NM_053642 0006631 // fatty acid metabolic process // traceable author statement /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0033490 // cholesterol biosynthetic process via lathosterol // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000248 // C-5 sterol desaturase activity // inferred from direct assay /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050046 // lathosterol oxidase activity // traceable author statement 1387927_a_at U03415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U03415.1 /DB_XREF=gi:442365 /GEN=D2Sut1e /FEA=FLmRNA /CNT=10 /TID=Rn.11005.2 /TIER=FL+Stack /STK=8 /UG=Rn.11005 /LL=93667 /DEF=Rattus norvegicus neuronal olfactomedin-related ER localized protein (D2Sut1e) mRNA, complete cds. /PROD=neuronal olfactomedin-related ER localizedprotein /FL=gb:U03415.1 U03415 olfactomedin 1 Olfm1 93667 NM_053573 0007275 // multicellular organismal development // inferred from electronic annotation /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0051259 // protein oligomerization // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387928_at AF288611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF288611.1 /DB_XREF=gi:12082692 /GEN=GCRP /FEA=FLmRNA /CNT=9 /TID=Rn.38108.1 /TIER=FL+Stack /STK=8 /UG=Rn.38108 /DEF=Rattus norvegicus guanylate-cyclase regulatory protein (GCRP) mRNA, complete cds. /PROD=guanylate-cyclase regulatory protein /FL=gb:AF288611.1 AF288611 Rap2 interacting protein Rap2ip 303569 NM_198758 0030828 // positive regulation of cGMP biosynthetic process // inferred from direct assay /// 0071445 // cellular response to protein stimulus // inferred from expression pattern 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0030250 // guanylate cyclase activator activity // inferred from direct assay /// 0051428 // peptide hormone receptor binding // inferred from physical interaction 1387929_at AB020504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB020504.1 /DB_XREF=gi:3929925 /FEA=FLmRNA /CNT=8 /TID=Rn.13083.1 /TIER=FL+Stack /STK=8 /UG=Rn.13083 /LL=171453 /UG_GENE=Pmf31 /DEF=Rattus norvegicus mRNA for PMF31, complete cds. /PROD=PMF31 /FL=gb:AB020504.1 AB020504 PMF32 protein Pmf31 171453 XR_085760 /// XR_086177 1387930_at L10229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L10229.1 /DB_XREF=gi:409014 /GEN=PAPII /FEA=FLmRNA /CNT=13 /TID=Rn.11222.1 /TIER=FL+Stack /STK=7 /UG=Rn.11222 /LL=171162 /DEF=Rat pancreatitis-associated protein (PAPII) mRNA, complete cds. /PROD=pancreatitis-associated protein /FL=gb:D23676.1 gb:L10229.1 L10229 regenerating islet-derived 3 alpha Reg3a 171162 NM_001145846 /// NM_172077 0006953 // acute-phase response // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1387931_at J00716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J00716.1 /DB_XREF=gi:203634 /FEA=FLmRNA /CNT=10 /TID=Rn.44578.1 /TIER=FL+Stack /STK=7 /UG=Rn.44578 /UG_TITLE=Rat gamma-E-crystallin (gamma 3-1) mRNA, complete cds /DEF=Rat gamma-E-crystallin (gamma 3-1) mRNA, complete cds. /FL=gb:J00716.1 J00716 crystallin, gamma E Cryge 24279 NM_173289 0001654 // eye development // not recorded /// 0002088 // lens development in camera-type eye // inferred from expression pattern /// 0002088 // lens development in camera-type eye // not recorded 0005212 // structural constituent of eye lens // traceable author statement /// 0005212 // structural constituent of eye lens // inferred from electronic annotation 1387932_at U39555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U39555.1 /DB_XREF=gi:1072115 /FEA=FLmRNA /CNT=16 /TID=Rn.6384.1 /TIER=FL /STK=3 /UG=Rn.6384 /LL=25550 /UG_GENE=Slc1a1 /DEF=Rattus norvegicus high affinity glutamate transporter EAAC1 mRNA, complete cds. /PROD=EAAC1 /FL=gb:U39555.1 gb:D63772.1 gb:U21104.1 U39555 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 Slc1a1 25550 NM_013032 0003333 // amino acid transmembrane transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006835 // dicarboxylic acid transport // inferred from electronic annotation /// 0015807 // L-amino acid transport // not recorded /// 0015813 // L-glutamate transport // inferred from direct assay /// 0015813 // L-glutamate transport // not recorded /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051938 // L-glutamate import // inferred from electronic annotation /// 0051938 // L-glutamate import // not recorded /// 0070779 // D-aspartate import // inferred from electronic annotation /// 0070779 // D-aspartate import // not recorded /// 0071436 // sodium ion export // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005313 // L-glutamate transmembrane transporter activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0015293 // symporter activity // inferred from electronic annotation /// 0015501 // glutamate:sodium symporter activity // inferred from direct assay /// 0015501 // glutamate:sodium symporter activity // not recorded /// 0015501 // glutamate:sodium symporter activity // inferred from electronic annotation /// 0016595 // glutamate binding // inferred from direct assay /// 0017153 // sodium:dicarboxylate symporter activity // inferred from electronic annotation 1387933_s_at AB020726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB020726.1 /DB_XREF=gi:4996221 /FEA=FLmRNA /CNT=12 /TID=Rn.13805.1 /TIER=FL /STK=1 /UG=Rn.13805 /DEF=Rattus norvegicus mRNA for podocalyxin, complete cds. /PROD=podocalyxin /FL=gb:AF109393.1 gb:AB020726.1 AB020726 podocalyxin-like Podxl 192181 NM_138848 0007155 // cell adhesion // inferred from electronic annotation /// 0007162 // negative regulation of cell adhesion // inferred from direct assay /// 0030335 // positive regulation of cell migration // not recorded /// 0030335 // positive regulation of cell migration // inferred from sequence or structural similarity /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0032534 // regulation of microvillus assembly // not recorded /// 0032534 // regulation of microvillus assembly // inferred from sequence or structural similarity /// 0032534 // regulation of microvillus assembly // inferred from electronic annotation /// 0033634 // positive regulation of cell-cell adhesion mediated by integrin // not recorded /// 0033634 // positive regulation of cell-cell adhesion mediated by integrin // inferred from sequence or structural similarity /// 0033634 // positive regulation of cell-cell adhesion mediated by integrin // inferred from electronic annotation /// 0050900 // leukocyte migration // inferred from electronic annotation /// 0050900 // leukocyte migration // not recorded /// 0072175 // epithelial tube formation // inferred from sequence or structural similarity 0001726 // ruffle // not recorded /// 0001726 // ruffle // inferred from sequence or structural similarity /// 0001726 // ruffle // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005902 // microvillus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030175 // filopodium // not recorded /// 0030175 // filopodium // inferred from sequence or structural similarity /// 0030175 // filopodium // inferred from electronic annotation /// 0031528 // microvillus membrane // not recorded /// 0031528 // microvillus membrane // inferred from sequence or structural similarity /// 0031528 // microvillus membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 1387934_at U37142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U37142.1 /DB_XREF=gi:1143284 /FEA=FLmRNA /CNT=9 /TID=Rn.10315.2 /TIER=FL+Stack /STK=7 /UG=Rn.10315 /LL=25393 /UG_GENE=Bcan /DEF=Rattus norvegicus brevican core protein mRNA, complete cds. /PROD=brevican core protein /FL=gb:U37142.1 U37142 brevican Bcan 25393 NM_001033665 /// NM_012916 0007155 // cell adhesion // inferred from electronic annotation /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0048168 // regulation of neuronal synaptic plasticity // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005624 // membrane fraction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // inferred from electronic annotation 1387935_at AF030243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF030243.1 /DB_XREF=gi:7158200 /FEA=FLmRNA /CNT=8 /TID=Rn.11944.1 /TIER=FL+Stack /STK=7 /UG=Rn.11944 /DEF=Rattus norvegicus cytokine receptor-like protein CYRL mRNA, complete cds. /PROD=cytokine receptor-like protein CYRL /FL=gb:AF030243.1 AF030243 interleukin 3 receptor, alpha Il3ra 246144 NM_139260 /// XM_001075152 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387936_at D14989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D14989.1 /DB_XREF=gi:303801 /FEA=FLmRNA /CNT=7 /TID=Rn.40365.1 /TIER=FL+Stack /STK=7 /UG=Rn.40365 /DEF=Rattus norvegicus mRNA for hydroxysteroid sulfotransferase subunit, complete cds. /PROD=hydroxysteroid sulfotransferase /FL=gb:D14989.1 D14989 sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 2 Sult2a2 361510 NM_001025131 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004027 // alcohol sulfotransferase activity // inferred from electronic annotation /// 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1387937_at AB009890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB009890.1 /DB_XREF=gi:3452567 /FEA=FLmRNA /CNT=19 /TID=Rn.8816.1 /TIER=FL+Stack /STK=6 /UG=Rn.8816 /LL=64509 /UG_GENE=Tpbp /DEF=Rattus norvegicus mRNA for spongiotrophoblast specific protein, complete cds. /PROD=spongiotrophoblast specific protein /FL=gb:AB009890.1 AB009890 trophoblast specific protein alpha Tpbpa 64509 NM_172073 0007565 // female pregnancy // non-traceable author statement 0008234 // cysteine-type peptidase activity // inferred from electronic annotation 1387938_at AB073318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB073318.1 /DB_XREF=gi:16326334 /GEN=dem-A20-4 /FEA=FLmRNA /CNT=19 /TID=Rn.19969.1 /TIER=FL+Stack /STK=6 /UG=Rn.19969 /DEF=Rattus norvegicus mRNA for Dem-A20-4, complete cds. /PROD=Dem-A20-4 /FL=gb:AF371321.1 gb:AF371325.1 gb:AB073318.1 AB073318 brain and acute leukemia, cytoplasmic Baalc 140720 NM_144762 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016020 // membrane // inferred from electronic annotation 1387939_at BF409210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409210 /DB_XREF=gi:11397185 /DB_XREF=UI-R-BT1-bkn-d-01-0-UI.s1 /CLONE=UI-R-BT1-bkn-d-01-0-UI /FEA=FLmRNA /CNT=18 /TID=Rn.10967.1 /TIER=Stack /STK=6 /UG=Rn.10967 /UG_TITLE=Rattus norvegicus proline rich protein mRNA, complete cds /FL=gb:U61729.1 BF409210 proline-rich nuclear receptor coactivator 1 Pnrc1 286988 NM_173322 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // not recorded 1387940_at U19516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U19516.1 /DB_XREF=gi:924598 /FEA=FLmRNA /CNT=8 /TID=Rn.10607.1 /TIER=FL+Stack /STK=6 /UG=Rn.10607 /DEF=Rattus norvegicus initiation factor eIF-2Be mRNA, complete cds. /PROD=eIF-2Be /FL=gb:U19516.1 U19516 eukaryotic translation initiation factor 2B, subunit 5 epsilon Eif2b5 192234 NM_138866 0001541 // ovarian follicle development // not recorded /// 0001541 // ovarian follicle development // inferred from sequence or structural similarity /// 0001541 // ovarian follicle development // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // not recorded /// 0006413 // translational initiation // inferred from sequence or structural similarity /// 0006413 // translational initiation // traceable author statement /// 0006413 // translational initiation // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from mutant phenotype /// 0006950 // response to stress // not recorded /// 0006950 // response to stress // inferred from sequence or structural similarity /// 0006950 // response to stress // inferred from electronic annotation /// 0009408 // response to heat // inferred from direct assay /// 0009408 // response to heat // not recorded /// 0009408 // response to heat // inferred from sequence or structural similarity /// 0009749 // response to glucose stimulus // inferred from direct assay /// 0014002 // astrocyte development // not recorded /// 0014002 // astrocyte development // inferred from sequence or structural similarity /// 0014002 // astrocyte development // inferred from electronic annotation /// 0014003 // oligodendrocyte development // not recorded /// 0014003 // oligodendrocyte development // inferred from sequence or structural similarity /// 0014003 // oligodendrocyte development // inferred from electronic annotation /// 0016070 // RNA metabolic process // inferred from electronic annotation /// 0032057 // negative regulation of translational initiation in response to stress // inferred from mutant phenotype /// 0042552 // myelination // not recorded /// 0042552 // myelination // inferred from sequence or structural similarity /// 0042552 // myelination // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0045948 // positive regulation of translational initiation // inferred from sequence or structural similarity /// 0048708 // astrocyte differentiation // not recorded /// 0048708 // astrocyte differentiation // inferred from sequence or structural similarity /// 0048708 // astrocyte differentiation // inferred from electronic annotation /// 0051716 // cellular response to stimulus // not recorded /// 0051716 // cellular response to stimulus // inferred from sequence or structural similarity /// 0051716 // cellular response to stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from direct assay /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from physical interaction /// 0005851 // eukaryotic translation initiation factor 2B complex // not recorded /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from sequence or structural similarity /// 0005851 // eukaryotic translation initiation factor 2B complex // traceable author statement /// 0005851 // eukaryotic translation initiation factor 2B complex // inferred from electronic annotation 0003743 // translation initiation factor activity // not recorded /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // translation initiation factor activity // traceable author statement /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from mutant phenotype /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0031369 // translation initiation factor binding // inferred from direct assay /// 0031369 // translation initiation factor binding // inferred from mutant phenotype 1387941_s_at U51898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U51898.1 /DB_XREF=gi:1743845 /FEA=FLmRNA /CNT=10 /TID=Rn.44692.1 /TIER=FL+Stack /STK=6 /UG=Rn.44692 /LL=116672 /UG_GENE=Pla2g6 /DEF=Rattus norvegicus Ca2+-independent phospholipase A2 mRNA, complete cds. /PROD=Ca2+-independent phospholipase A2 /FL=gb:U51898.1 U51898 phospholipase A2, group VI (cytosolic, calcium-independent) Pla2g6 360426 NM_001005560 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0032049 // cardiolipin biosynthetic process // inferred from electronic annotation /// 0032049 // cardiolipin biosynthetic process // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded 0004623 // phospholipase A2 activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0047499 // calcium-independent phospholipase A2 activity // inferred from direct assay 1387942_at AF182714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF182714.1 /DB_XREF=gi:5911432 /FEA=FLmRNA /CNT=7 /TID=Rn.15189.1 /TIER=FL+Stack /STK=6 /UG=Rn.15189 /DEF=Rattus norvegicus putative phosphatephosphoenolpyruvate translocator mRNA, complete cds. /PROD=putative phosphatephosphoenolpyruvatetranslocator /FL=gb:AF182714.1 AF182714 solute carrier family 35, member E4 Slc35e4 266687 NM_153316 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1387943_at U16686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U16686.1 /DB_XREF=gi:1041810 /FEA=FLmRNA /CNT=6 /TID=Rn.31787.1 /TIER=FL+Stack /STK=6 /UG=Rn.31787 /DEF=Rattus norvegicus defensin RatNP-1 precursor mRNA, complete cds. /PROD=defensin RatNP-1 precursor /FL=gb:U16686.1 gb:U16685.1 U16686 defensin, alpha 5, Paneth cell-specific Defa 286995 NM_173329 0006952 // defense response // inferred from electronic annotation /// 0031640 // killing of cells of another organism // inferred from electronic annotation /// 0042742 // defense response to bacterium // traceable author statement /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0050832 // defense response to fungus // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 1387944_at AF092207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF092207.1 /DB_XREF=gi:6002598 /FEA=FLmRNA /CNT=21 /TID=Rn.29736.1 /TIER=FL /STK=5 /UG=Rn.29736 /DEF=Rattus norvegicus unknown mRNA, complete cds. /PROD=unknown /FL=gb:AF092207.1 AF092207 HAUS augmin-like complex, subunit 1 Haus1 192228 NM_138864 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0051225 // spindle assembly // inferred from electronic annotation /// 0051225 // spindle assembly // not recorded /// 0051225 // spindle assembly // inferred from sequence or structural similarity /// 0051297 // centrosome organization // inferred from electronic annotation /// 0051297 // centrosome organization // not recorded /// 0051297 // centrosome organization // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation 0000922 // spindle pole // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0070652 // HAUS complex // inferred from electronic annotation /// 0070652 // HAUS complex // not recorded /// 0070652 // HAUS complex // inferred from sequence or structural similarity 1387945_at S75437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:S75437.1 /DB_XREF=gi:913548 /GEN=TCRg; C4L /FEA=FLmRNA /CNT=10 /TID=Rn.43233.1 /TIER=FL /STK=5 /UG=Rn.43233 /DEF=Rattus norvegicus T-cell receptor gamma chain (TCRg; C4L) mRNA, complete cds. /PROD=T-cell receptor gamma chain /FL=gb:S75437.1 S75437 Tcrg-C protein-like LOC681290 681290 XM_002725275 /// XM_002728486 1387946_at AF065438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF065438.1 /DB_XREF=gi:3152927 /FEA=FLmRNA /CNT=10 /TID=Rn.3251.1 /TIER=FL /STK=5 /UG=Rn.3251 /DEF=Rattus norvegicus mama mRNA, complete cds. /PROD=mama /FL=gb:AF065438.1 AF065438 lectin, galactoside-binding, soluble, 3 binding protein Lgals3bp 245955 NM_139096 0007155 // cell adhesion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387947_at U56241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U56241.1 /DB_XREF=gi:1326232 /FEA=FLmRNA /CNT=8 /TID=Rn.10725.1 /TIER=FL /STK=5 /UG=Rn.10725 /LL=54264 /UG_GENE=Mafb /DEF=Rattus norvegicus transcription factor Maf1 mRNA, complete cds. /PROD=Maf1 /FL=gb:U56241.1 U56241 v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian) Mafb 54264 NM_019316 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007379 // segment specification // inferred from electronic annotation /// 0007379 // segment specification // not recorded /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // not recorded /// 0021571 // rhombomere 5 development // inferred from electronic annotation /// 0021571 // rhombomere 5 development // not recorded /// 0021572 // rhombomere 6 development // inferred from electronic annotation /// 0021572 // rhombomere 6 development // not recorded /// 0035284 // brain segmentation // inferred from electronic annotation /// 0035284 // brain segmentation // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045647 // negative regulation of erythrocyte differentiation // inferred from electronic annotation /// 0045647 // negative regulation of erythrocyte differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1387948_at D26178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D26178.1 /DB_XREF=gi:1127035 /FEA=FLmRNA /CNT=8 /TID=Rn.3750.1 /TIER=FL /STK=5 /UG=Rn.3750 /DEF=Rat heart mRNA serinethreonine protein kinase, complete cds. /PROD=serinethreonine protein kinase /FL=gb:D26178.1 D26178 intestinal cell kinase Ick 84411 NM_138886 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from direct assay /// 0007243 // intracellular protein kinase cascade // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387949_at M58041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M58041.1 /DB_XREF=gi:203520 /FEA=FLmRNA /CNT=6 /TID=Rn.10389.1 /TIER=FL /STK=5 /UG=Rn.10389 /LL=171518 /UG_GENE=Cyp2c22 /DEF=Rat P49 cytochrome P450 mRNA, complete cds. /PROD=cytochrome P-450 /FL=gb:M58041.1 M58041 cytochrome P450, family 2, subfamily c, polypeptide 22 Cyp2c22 171518 NM_138512 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // non-traceable author statement /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // non-traceable author statement /// 0004497 // monooxygenase activity // traceable author statement /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1387950_at AF158186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF158186.1 /DB_XREF=gi:5360165 /FEA=FLmRNA /CNT=7 /TID=Rn.20690.1 /TIER=FL /STK=5 /UG=Rn.20690 /DEF=Rattus norvegicus pEachy mRNA, complete cds. /PROD=pEachy /FL=gb:AF158186.1 AF158186 nuclear import 7 homolog (S. cerevisiae) Nip7 192180 NM_138847 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0042255 // ribosome assembly // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1387951_at AB032395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB032395 /DB_XREF=gi:7259309 /FEA=FLmRNA /CNT=44 /TID=Rn.18841.1 /TIER=Stack /STK=24 /UG=Rn.18841 /LL=64036 /UG_GENE=Daf /UG_TITLE=decay-accelarating factor /DEF=Rattus norvegicus gene for decay-accelarating factor, partial cds, alternative exons GPI3UT and TM3UT /FL=gb:AF039583.1 gb:AB026903.1 gb:AB026901.1 AB032395 Cd55 molecule Cd55 64036 NM_022269 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007283 // spermatogenesis // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045916 // negative regulation of complement activation // inferred from direct assay /// 0060137 // maternal process involved in parturition // inferred from expression pattern 0009897 // external side of plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from direct assay /// 0045121 // membrane raft // not recorded 0004857 // enzyme inhibitor activity // inferred from direct assay 1387952_a_at AF065147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF065147.1 /DB_XREF=gi:3152693 /FEA=FLmRNA /CNT=10 /TID=Rn.1120.2 /TIER=FL /STK=2 /UG=Rn.1120 /LL=25406 /UG_GENE=Cd44 /DEF=Rattus norvegicus glycoprotein CD44s mRNA, complete cds. /PROD=glycoprotein CD44s /FL=gb:AF065147.1 gb:U52179.1 gb:M61875.1 AF065147 Cd44 molecule Cd44 25406 NM_012924 0001558 // regulation of cell growth // inferred from direct assay /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001955 // blood vessel maturation // inferred from expression pattern /// 0002246 // wound healing involved in inflammatory response // not recorded /// 0002246 // wound healing involved in inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from expression pattern /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from mutant phenotype /// 0007155 // cell adhesion // not recorded /// 0007155 // cell adhesion // non-traceable author statement /// 0007165 // signal transduction // not recorded /// 0010628 // positive regulation of gene expression // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016477 // cell migration // inferred from mutant phenotype /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0033031 // positive regulation of neutrophil apoptosis // inferred from mutant phenotype /// 0033138 // positive regulation of peptidyl-serine phosphorylation // not recorded /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033189 // response to vitamin A // inferred from expression pattern /// 0034238 // macrophage fusion // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043518 // negative regulation of DNA damage response, signal transduction by p53 class mediator // not recorded /// 0043518 // negative regulation of DNA damage response, signal transduction by p53 class mediator // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0060442 // branching involved in prostate gland morphogenesis // not recorded /// 0060442 // branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005057 // receptor signaling protein activity // not recorded /// 0005057 // receptor signaling protein activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // inferred from mutant phenotype /// 0005540 // hyaluronic acid binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0051219 // phosphoprotein binding // inferred from physical interaction 1387953_at AF399643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF399643.1 /DB_XREF=gi:15216996 /FEA=FLmRNA /CNT=11 /TID=Rn.15404.1 /TIER=FL /STK=4 /UG=Rn.15404 /DEF=Rattus norvegicus p80 coilin mRNA, complete cds. /PROD=p80 coilin /FL=gb:AF399643.1 AF399643 coilin Coil 50998 NM_017360 0008152 // metabolic process // not recorded 0001674 // female germ cell nucleus // not recorded /// 0001674 // female germ cell nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0015030 // Cajal body // not recorded /// 0015030 // Cajal body // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from mutant phenotype /// 0008022 // protein C-terminus binding // not recorded /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0015036 // disulfide oxidoreductase activity // not recorded /// 0015036 // disulfide oxidoreductase activity // inferred from electronic annotation 1387954_a_at AF090113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF090113.1 /DB_XREF=gi:3639076 /FEA=FLmRNA /CNT=5 /TID=Rn.15680.1 /TIER=FL /STK=4 /UG=Rn.15680 /LL=171571 /UG_GENE=Grip2 /DEF=Rattus norvegicus AMPA receptor binding protein mRNA, complete cds. /PROD=AMPA receptor binding protein /FL=gb:AF090113.1 AF090113 glutamate receptor interacting protein 2 Grip2 171571 NM_138535 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043198 // dendritic shaft // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction 1387955_at M31109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M31109.1 /DB_XREF=gi:204485 /FEA=FLmRNA /CNT=5 /TID=Rn.24945.1 /TIER=FL /STK=4 /UG=Rn.24945 /UG_TITLE=Rat UDP-glucuronosyltransferase mRNA, complete cds /DEF=Rat UDP-glucuronosyltransferase mRNA, complete cds. /FL=gb:M31109.1 M31109 UDP glucuronosyltransferase 2 family, polypeptide B5 Ugt2b5 266685 NM_153314 0008152 // metabolic process // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0071361 // cellular response to ethanol // inferred from expression pattern /// 0071378 // cellular response to growth hormone stimulus // inferred from expression pattern /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern /// 0071394 // cellular response to testosterone stimulus // inferred from expression pattern 0005743 // mitochondrial inner membrane // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001972 // retinoic acid binding // not recorded /// 0015020 // glucuronosyltransferase activity // inferred from direct assay /// 0015020 // glucuronosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1387956_s_at AF253064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF253064.2 /DB_XREF=gi:17105378 /GEN=CKLF1 /FEA=FLmRNA /CNT=5 /TID=Rn.25215.1 /TIER=FL /STK=4 /UG=Rn.25215 /DEF=Rattus norvegicus chemokine-like factor 1 (CKLF1) mRNA, complete cds. /PROD=chemokine-like factor 1 /FL=gb:AF253064.2 AF253064 chemokine-like factor Cklf 245978 NM_139111 0006935 // chemotaxis // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0030593 // neutrophil chemotaxis // inferred from direct assay /// 0030593 // neutrophil chemotaxis // not recorded /// 0030595 // leukocyte chemotaxis // inferred from direct assay /// 0032940 // secretion by cell // not recorded /// 0048246 // macrophage chemotaxis // not recorded /// 0048247 // lymphocyte chemotaxis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // not recorded 1387957_a_at AF255888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF255888.1 /DB_XREF=gi:14009489 /GEN=Ruk /FEA=FLmRNA /CNT=6 /TID=Rn.24200.1 /TIER=FL /STK=4 /UG=Rn.24200 /LL=84357 /DEF=Rattus norvegicus adapter protein RUK-l (Ruk) mRNA, complete cds; alternatively spliced. /PROD=adapter protein RUK-l /FL=gb:AF255888.1 gb:AF131867.1 AF255888 SH3-domain kinase binding protein 1 Sh3kbp1 84357 NM_053360 0006897 // endocytosis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation 1387958_at L32601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L32601.1 /DB_XREF=gi:506414 /FEA=FLmRNA /CNT=5 /TID=Rn.10030.1 /TIER=FL /STK=4 /UG=Rn.10030 /LL=171516 /UG_GENE=LOC171516 /DEF=Rat 20 alpha-hydroxysteroid dehydrogenase mRNA, complete cds. /PROD=20-alpha-hydroxysteroid dehydrogenase /FL=gb:L32601.1 gb:D14424.1 L32601 aldo-keto reductase family 1, member C18 Akr1c18 171516 NM_138510 0006709 // progesterone catabolic process // inferred from electronic annotation /// 0006709 // progesterone catabolic process // not recorded /// 0007567 // parturition // inferred from electronic annotation /// 0007567 // parturition // not recorded /// 0042448 // progesterone metabolic process // inferred from direct assay /// 0050810 // regulation of steroid biosynthetic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005622 // intracellular // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0047006 // 20-alpha-hydroxysteroid dehydrogenase activity // inferred from direct assay /// 0047006 // 20-alpha-hydroxysteroid dehydrogenase activity // not recorded /// 0047006 // 20-alpha-hydroxysteroid dehydrogenase activity // inferred from electronic annotation 1387959_at AB009372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB009372.1 /DB_XREF=gi:3273306 /FEA=FLmRNA /CNT=4 /TID=Rn.29979.1 /TIER=FL /STK=4 /UG=Rn.29979 /DEF=Rattus norvegicus mRNA for Lysophospholipase, complete cds. /PROD=Lysophospholipase /FL=gb:AB009372.1 AB009372 asparaginase homolog (S. cerevisiae) Aspg 246266 NM_144750 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006528 // asparagine metabolic process // inferred from direct assay /// 0006644 // phospholipid metabolic process // inferred from direct assay /// 0016042 // lipid catabolic process // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay 0003847 // 1-alkyl-2-acetylglycerophosphocholine esterase activity // inferred from mutant phenotype /// 0003847 // 1-alkyl-2-acetylglycerophosphocholine esterase activity // inferred from electronic annotation /// 0004067 // asparaginase activity // inferred from direct assay /// 0004067 // asparaginase activity // inferred from mutant phenotype /// 0004067 // asparaginase activity // inferred from electronic annotation /// 0004622 // lysophospholipase activity // inferred from direct assay /// 0004622 // lysophospholipase activity // inferred from mutant phenotype /// 0004622 // lysophospholipase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387960_at AF068861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF068861.1 /DB_XREF=gi:3366933 /FEA=FLmRNA /CNT=8 /TID=Rn.2267.1 /TIER=FL /STK=3 /UG=Rn.2267 /LL=64389 /UG_GENE=Defb2 /DEF=Rattus norvegicus beta defensin-2 mRNA, complete cds. /PROD=beta defensin-2 /FL=gb:AF068861.1 AF068861 defensin beta 4 Defb4 64389 NM_022544 0006952 // defense response // inferred from electronic annotation /// 0042742 // defense response to bacterium // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 1387961_at M88709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M88709.1 /DB_XREF=gi:203245 /FEA=FLmRNA /CNT=10 /TID=Rn.11366.2 /TIER=FL /STK=3 /UG=Rn.11366 /LL=116597 /UG_GENE=Opcml /DEF=Rattus norvegicus cell adhesion-like molecule mRNA, complete CDS. /PROD=cell adhesion-like molecule /FL=gb:M88709.1 M88709 opioid binding protein/cell adhesion molecule-like Opcml 116597 NM_053848 0007155 // cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 1387962_at U41164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U41164.1 /DB_XREF=gi:1127842 /GEN=rKr1 /FEA=FLmRNA /CNT=9 /TID=Rn.74244.1 /TIER=FL /STK=3 /UG=Rn.74244 /DEF=Rattus norvegicus Cys2His2 zinc finger protein (rKr1) mRNA, complete cds. /PROD=Cys2His2 zinc finger protein /FL=gb:U41164.1 U41164 zinc finger protein 180 Zfp180 246279 NM_144757 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1387963_a_at M24396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M24396.1 /DB_XREF=gi:207606 /FEA=FLmRNA /CNT=6 /TID=Rn.11330.1 /TIER=FL /STK=3 /UG=Rn.11330 /LL=114768 /UG_GENE=Uox /UG_TITLE=urate oxidase /DEF=Rat urate oxidase 2 mRNA, complete cds. /FL=gb:M24396.1 M24396 urate oxidase Uox 114768 NM_053768 0006144 // purine base metabolic process // inferred from electronic annotation /// 0006145 // purine base catabolic process // traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation /// 0005782 // peroxisomal matrix // traceable author statement 0004846 // urate oxidase activity // inferred from electronic annotation /// 0004846 // urate oxidase activity // traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1387964_a_at AY071924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY071924.1 /DB_XREF=gi:18250365 /FEA=FLmRNA /CNT=8 /TID=Rn.64648.1 /TIER=FL /STK=3 /UG=Rn.64648 /DEF=Rattus norvegicus oxidoreductase ERO1-L mRNA, complete cds; alternatively spliced. /PROD=oxidoreductase ERO1-L /FL=gb:AF324255.1 gb:AF489855.1 gb:AY071924.1 AY071924 ERO1-like (S. cerevisiae) Ero1l 171562 NM_138528 0006457 // protein folding // not recorded /// 0006457 // protein folding // inferred from electronic annotation /// 0006467 // protein thiol-disulfide exchange // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // not recorded /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded /// 0051085 // chaperone mediated protein folding requiring cofactor // inferred from electronic annotation /// 0051085 // chaperone mediated protein folding requiring cofactor // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // not recorded /// 0016671 // oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1387965_at AF035963 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF035963.1 /DB_XREF=gi:2665891 /GEN=KIM-1 /FEA=FLmRNA /CNT=4 /TID=Rn.11154.1 /TIER=FL /STK=3 /UG=Rn.11154 /DEF=Rattus norvegicus kidney injury molecule-1 (KIM-1) mRNA, complete cds. /PROD=kidney injury molecule-1 /FL=gb:AF035963.1 AF035963 hepatitis A virus cellular receptor 1 Havcr1 286934 NM_173149 0006911 // phagocytosis, engulfment // inferred from mutant phenotype /// 0007584 // response to nutrient // inferred from expression pattern /// 0010046 // response to mycotoxin // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0046677 // response to antibiotic // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045335 // phagocytic vesicle // inferred from direct assay 1387966_at AF329099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF329099.1 /DB_XREF=gi:17736919 /FEA=FLmRNA /CNT=4 /TID=Rn.22774.1 /TIER=FL /STK=3 /UG=Rn.22774 /DEF=Rattus norvegicus asparaginase-like sperm autoantigen mRNA, complete cds. /PROD=asparaginase-like sperm autoantigen /FL=gb:AF329099.1 AF329099 asparaginase like 1 Asrgl1 246307 NM_145089 0033345 // asparagine catabolic process via L-aspartate // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0003948 // N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity // inferred from direct assay /// 0004067 // asparaginase activity // inferred from direct assay /// 0004067 // asparaginase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387967_at M27883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M27883.1 /DB_XREF=gi:206468 /FEA=FLmRNA /CNT=4 /TID=Rn.2337.1 /TIER=FL /STK=3 /UG=Rn.2337 /UG_TITLE=Rat pancreatic secretory trypsin inhibitor type II (PSTI-II) mRNA, complete cds /DEF=Rat pancreatic secretory trypsin inhibitor type II (PSTI-II) mRNA, complete cds. /FL=gb:M27883.1 M27883 serine peptidase inhibitor, Kazal type 1 Spink1 266602 NM_152936 0005576 // extracellular region // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1387968_at L22022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L22022.1 /DB_XREF=gi:347436 /GEN=NTT73 /FEA=FLmRNA /CNT=4 /TID=Rn.9716.1 /TIER=FL /STK=3 /UG=Rn.9716 /DEF=Rat orphan transporter v7-3 (NTT73) mRNA, complete cds. /PROD=orphan transporter v7-3 /FL=gb:L22022.1 L22022 solute carrier family 6 (neutral amino acid transporter), member 15 Slc6a15 282712 NM_172321 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0015171 // amino acid transmembrane transporter activity // not recorded /// 0015293 // symporter activity // inferred from electronic annotation 1387969_at U22520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U22520.1 /DB_XREF=gi:1565293 /GEN=IP-10 /FEA=FLmRNA /CNT=4 /TID=Rn.10584.1 /TIER=FL /STK=3 /UG=Rn.10584 /DEF=Rattus norvegicus interferon inducible protein 10 (IP-10) mRNA, complete cds. /PROD=interferon inducible protein 10 /FL=gb:U22520.1 U22520 chemokine (C-X-C motif) ligand 10 Cxcl10 245920 NM_139089 0002690 // positive regulation of leukocyte chemotaxis // inferred from direct assay /// 0006928 // cellular component movement // traceable author statement /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from direct assay /// 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // inferred from direct assay /// 0007517 // muscle organ development // traceable author statement /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // traceable author statement /// 0009306 // protein secretion // inferred from direct assay /// 0009409 // response to cold // inferred from expression pattern /// 0009615 // response to virus // inferred from expression pattern /// 0010332 // response to gamma radiation // inferred from expression pattern /// 0010996 // response to auditory stimulus // inferred from expression pattern /// 0016525 // negative regulation of angiogenesis // inferred from direct assay /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033280 // response to vitamin D // inferred from expression pattern /// 0034605 // cellular response to heat // inferred from expression pattern 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // traceable author statement /// 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from direct assay /// 0008009 // chemokine activity // traceable author statement /// 0008009 // chemokine activity // inferred from electronic annotation 1387970_at AF276870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF276870.1 /DB_XREF=gi:14578931 /FEA=FLmRNA /CNT=3 /TID=Rn.81033.1 /TIER=FL /STK=3 /UG=Rn.81033 /DEF=Rattus norvegicus amino acid transporter system N2 mRNA, complete cds. /PROD=amino acid transporter system N2 /FL=gb:AF276870.1 AF276870 solute carrier family 38, member 5 Slc38a5 192208 NM_138854 0006865 // amino acid transport // not recorded /// 0015804 // neutral amino acid transport // inferred from direct assay /// 0015816 // glycine transport // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0015171 // amino acid transmembrane transporter activity // inferred from direct assay /// 0015171 // amino acid transmembrane transporter activity // not recorded /// 0015175 // neutral amino acid transmembrane transporter activity // inferred from direct assay /// 0015187 // glycine transmembrane transporter activity // inferred from direct assay 1387971_a_at AF092450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF092450.1 /DB_XREF=gi:3676827 /GEN=JRP /FEA=FLmRNA /CNT=1 /TID=Rn.44266.3 /TIER=FL /STK=1 /UG=Rn.44266 /LL=116457 /DEF=Rattus norvegicus JIP-1 related protein (JRP) mRNA, complete cds. /PROD=JIP-1 related protein /FL=gb:AF092450.1 AF092450 mitogen-activated protein kinase 8 interacting protein 1 Mapk8ip1 116457 NM_053777 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006916 // anti-apoptosis // inferred from direct assay /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from direct assay /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007258 // JUN phosphorylation // inferred from electronic annotation /// 0007258 // JUN phosphorylation // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // not recorded /// 0043508 // negative regulation of JUN kinase activity // inferred from mutant phenotype /// 0046328 // regulation of JNK cascade // not recorded /// 0046328 // regulation of JNK cascade // inferred from sequence or structural similarity /// 0046328 // regulation of JNK cascade // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005078 // MAP-kinase scaffold activity // inferred from mutant phenotype /// 0005078 // MAP-kinase scaffold activity // not recorded /// 0005078 // MAP-kinase scaffold activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008432 // JUN kinase binding // inferred from physical interaction /// 0019894 // kinesin binding // not recorded /// 0019894 // kinesin binding // inferred from sequence or structural similarity /// 0019894 // kinesin binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0031434 // mitogen-activated protein kinase kinase binding // inferred from physical interaction /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from physical interaction 1387972_at AF221952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF221952.1 /DB_XREF=gi:7861966 /FEA=FLmRNA /CNT=4 /TID=Rn.18860.1 /TIER=FL /STK=3 /UG=Rn.18860 /LL=171554 /UG_GENE=Mucdhl /DEF=Rattus norvegicus mu-protocadherin mRNA, complete cds. /PROD=mu-protocadherin /FL=gb:AF221952.1 AF221952 mucin and cadherin like Mucdhl 171554 NM_138525 0007155 // cell adhesion // inferred from direct assay /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from mutant phenotype /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation 1387973_at U39206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U39206.1 /DB_XREF=gi:1146435 /GEN=CYP4F4 /FEA=FLmRNA /CNT=3 /TID=Rn.10170.1 /TIER=FL /STK=3 /UG=Rn.10170 /DEF=Rattus norvegicus cytochrome P450 4F4 (CYP4F4) mRNA, complete cds. /PROD=cytochrome P450 4F4 /FL=gb:U39206.1 U39206 cytochrome P450, family 4, subfamily f, polypeptide 4 Cyp4f4 286904 NM_173123 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from direct assay /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1387974_a_at AF445995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF445995.1 /DB_XREF=gi:19071438 /FEA=FLmRNA /CNT=3 /TID=Rn.10583.2 /TIER=FL /STK=3 /UG=Rn.10583 /LL=80899 /UG_GENE=Slc21a4 /DEF=Rattus norvegicus organic anion transporter K3 mRNA, complete cds, alternatively spliced. /PROD=organic anion transporter K3 /FL=gb:AF445995.1 gb:AF445998.1 gb:AF446002.1 AF445995 kidney specific organic anion transporter Slc21a4 80899 NM_030837 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015711 // organic anion transport // traceable author statement /// 0015893 // drug transport // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0008514 // organic anion transmembrane transporter activity // traceable author statement /// 0015350 // methotrexate transporter activity // inferred from direct assay 1387975_at AF047707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF047707.1 /DB_XREF=gi:4105566 /FEA=FLmRNA /CNT=19 /TID=Rn.24091.1 /TIER=FL /STK=2 /UG=Rn.24091 /LL=83626 /UG_GENE=Ugcg /DEF=Rattus norvegicus UDP-glucose:ceramide glycosyltransferase mRNA, complete cds. /PROD=UDP-glucose:ceramide glycosyltransferase /FL=gb:AF047707.1 AF047707 UDP-glucose ceramide glucosyltransferase Ugcg 83626 NM_031795 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008120 // ceramide glucosyltransferase activity // inferred from direct assay /// 0008120 // ceramide glucosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1387976_at AF294257 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF294257.1 /DB_XREF=gi:15419606 /FEA=FLmRNA /CNT=14 /TID=Rn.39351.1 /TIER=FL /STK=2 /UG=Rn.39351 /LL=116501 /UG_GENE=Slc9a3r2 /DEF=Rattus norvegicus sodium-hydrogen exchanger 3 regulatory factor 2 mRNA, complete cds. /PROD=sodium-hydrogen exchanger 3 regulatory factor 2 /FL=gb:AF294257.1 AF294257 solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2 Slc9a3r2 116501 NM_053811 0048839 // inner ear development // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from mutant phenotype /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from mutant phenotype /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0016247 // channel regulator activity // inferred from mutant phenotype 1387977_at AF218575 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF218575.1 /DB_XREF=gi:9651647 /GEN=NBS1 /FEA=FLmRNA /CNT=11 /TID=Rn.25214.1 /TIER=FL /STK=2 /UG=Rn.25214 /LL=85482 /DEF=Rattus norvegicus Nbs1 (NBS1) mRNA, complete cds. /PROD=Nbs1 /FL=gb:AF218575.1 AF218575 nibrin Nbn 85482 NM_138873 0000075 // cell cycle checkpoint // traceable author statement /// 0000077 // DNA damage checkpoint // inferred from electronic annotation /// 0000077 // DNA damage checkpoint // not recorded /// 0000723 // telomere maintenance // not recorded /// 0000723 // telomere maintenance // inferred from sequence or structural similarity /// 0000723 // telomere maintenance // traceable author statement /// 0000723 // telomere maintenance // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from sequence or structural similarity /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001832 // blastocyst growth // not recorded /// 0001832 // blastocyst growth // inferred from sequence or structural similarity /// 0001832 // blastocyst growth // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // not recorded /// 0006302 // double-strand break repair // inferred from sequence or structural similarity /// 0006302 // double-strand break repair // traceable author statement /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007095 // mitotic cell cycle G2/M transition DNA damage checkpoint // not recorded /// 0007095 // mitotic cell cycle G2/M transition DNA damage checkpoint // inferred from sequence or structural similarity /// 0007095 // mitotic cell cycle G2/M transition DNA damage checkpoint // inferred from electronic annotation /// 0007126 // meiosis // inferred from electronic annotation /// 0007131 // reciprocal meiotic recombination // traceable author statement /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0031575 // mitotic cell cycle G1/S transition checkpoint // not recorded /// 0031575 // mitotic cell cycle G1/S transition checkpoint // inferred from sequence or structural similarity /// 0031575 // mitotic cell cycle G1/S transition checkpoint // inferred from electronic annotation /// 0031954 // positive regulation of protein autophosphorylation // inferred from electronic annotation /// 0031954 // positive regulation of protein autophosphorylation // not recorded /// 0032508 // DNA duplex unwinding // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // not recorded /// 0033674 // positive regulation of kinase activity // inferred from electronic annotation /// 0033674 // positive regulation of kinase activity // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045190 // isotype switching // not recorded /// 0045190 // isotype switching // inferred from sequence or structural similarity /// 0045190 // isotype switching // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from mutant phenotype /// 0048145 // regulation of fibroblast proliferation // inferred from direct assay /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0000784 // nuclear chromosome, telomeric region // inferred from electronic annotation /// 0000784 // nuclear chromosome, telomeric region // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005657 // replication fork // inferred from electronic annotation /// 0005657 // replication fork // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0030870 // Mre11 complex // not recorded /// 0030870 // Mre11 complex // inferred from sequence or structural similarity /// 0030870 // Mre11 complex // traceable author statement /// 0030870 // Mre11 complex // inferred from electronic annotation /// 0042405 // nuclear inclusion body // not recorded /// 0042405 // nuclear inclusion body // inferred from sequence or structural similarity /// 0042405 // nuclear inclusion body // inferred from electronic annotation 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // not recorded /// 0004003 // ATP-dependent DNA helicase activity // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from sequence or structural similarity /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded /// 0047485 // protein N-terminus binding // inferred from sequence or structural similarity /// 0047485 // protein N-terminus binding // inferred from electronic annotation 1387978_at U49057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U49057.1 /DB_XREF=gi:1438533 /FEA=FLmRNA /CNT=9 /TID=Rn.10530.1 /TIER=FL /STK=2 /UG=Rn.10530 /DEF=Rattus norvegicus CTD-binding SR-like protein rA9 mRNA, complete cds. /PROD=rA9 /FL=gb:U49057.1 U49057 PHD and ring finger domains 1 Phrf1 245925 NM_139093 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006397 // mRNA processing // inferred from mutant phenotype 0005634 // nucleus // inferred from mutant phenotype 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070063 // RNA polymerase binding // inferred from physical interaction 1387979_at D25543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D25543.1 /DB_XREF=gi:516825 /FEA=FLmRNA /CNT=7 /TID=Rn.16072.1 /TIER=FL /STK=2 /UG=Rn.16072 /DEF=Rattus norvegicus mRNA for novel golgi-associated protein GCP360, complete cds. /PROD=rat GCP360 /FL=gb:D25543.1 D25543 golgi autoantigen, golgin subfamily b, macrogolgin 1 Golgb1 192243 NM_138885 0005793 // ER-Golgi intermediate compartment // not recorded /// 0005794 // Golgi apparatus // not recorded 0005515 // protein binding // not recorded 1387980_at AF187323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF187323.1 /DB_XREF=gi:6010770 /GEN=CatQ /FEA=FLmRNA /CNT=6 /TID=Rn.35820.1 /TIER=FL /STK=2 /UG=Rn.35820 /DEF=Rattus norvegicus cathepsin Q (CatQ) mRNA, complete cds. /PROD=cathepsin Q /FL=gb:AF187323.1 AF187323 cathepsin Q Ctsq 246147 NM_139262 0006508 // proteolysis // inferred from electronic annotation 0005764 // lysosome // non-traceable author statement /// 0005764 // lysosome // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387981_at AF079864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF079864.1 /DB_XREF=gi:3420758 /FEA=FLmRNA /CNT=5 /TID=Rn.12541.1 /TIER=FL /STK=2 /UG=Rn.12541 /DEF=Rattus norvegicus putative G-protein coupled receptor RA1c mRNA, complete cds. /PROD=putative G-protein coupled receptor RA1c /FL=gb:AF079864.1 AF079864 olfactory receptor 59 Olr59 170816 NM_173293 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from sequence or structural similarity 1387982_at AF057025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF057025.1 /DB_XREF=gi:3044207 /FEA=FLmRNA /CNT=5 /TID=Rn.14534.1 /TIER=FL /STK=2 /UG=Rn.14534 /LL=29260 /UG_GENE=Tlr4 /DEF=Rattus norvegicus toll protein mRNA, complete cds. /PROD=toll protein /FL=gb:AF057025.1 AF057025 toll-like receptor 4 Tlr4 29260 NM_019178 0000187 // activation of MAPK activity // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0002218 // activation of innate immune response // not recorded /// 0002218 // activation of innate immune response // inferred from electronic annotation /// 0002224 // toll-like receptor signaling pathway // inferred from direct assay /// 0002282 // microglial cell activation involved in immune response // inferred from direct assay /// 0002537 // nitric oxide production involved in inflammatory response // inferred from electronic annotation /// 0002537 // nitric oxide production involved in inflammatory response // not recorded /// 0002758 // innate immune response-activating signal transduction // inferred from mutant phenotype /// 0003009 // skeletal muscle contraction // inferred from expression pattern /// 0006954 // inflammatory response // inferred from expression pattern /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded /// 0007252 // I-kappaB phosphorylation // inferred from electronic annotation /// 0007252 // I-kappaB phosphorylation // not recorded /// 0009617 // response to bacterium // not recorded /// 0009617 // response to bacterium // inferred from electronic annotation /// 0009636 // response to toxin // inferred from expression pattern /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010572 // positive regulation of platelet activation // not recorded /// 0014823 // response to activity // inferred from expression pattern /// 0016064 // immunoglobulin mediated immune response // inferred from expression pattern /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // not recorded /// 0032496 // response to lipopolysaccharide // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032497 // detection of lipopolysaccharide // not recorded /// 0032497 // detection of lipopolysaccharide // inferred from sequence or structural similarity /// 0032497 // detection of lipopolysaccharide // inferred from electronic annotation /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0032609 // interferon-gamma production // inferred from electronic annotation /// 0032609 // interferon-gamma production // not recorded /// 0032689 // negative regulation of interferon-gamma production // not recorded /// 0032700 // negative regulation of interleukin-17 production // not recorded /// 0032707 // negative regulation of interleukin-23 production // not recorded /// 0032715 // negative regulation of interleukin-6 production // not recorded /// 0032720 // negative regulation of tumor necrosis factor production // not recorded /// 0032722 // positive regulation of chemokine production // inferred from electronic annotation /// 0032722 // positive regulation of chemokine production // not recorded /// 0032727 // positive regulation of interferon-alpha production // not recorded /// 0032728 // positive regulation of interferon-beta production // not recorded /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0032732 // positive regulation of interleukin-1 production // not recorded /// 0032733 // positive regulation of interleukin-10 production // not recorded /// 0032735 // positive regulation of interleukin-12 production // not recorded /// 0032755 // positive regulation of interleukin-6 production // inferred from electronic annotation /// 0032755 // positive regulation of interleukin-6 production // not recorded /// 0032757 // positive regulation of interleukin-8 production // inferred from electronic annotation /// 0032757 // positive regulation of interleukin-8 production // not recorded /// 0032760 // positive regulation of tumor necrosis factor production // inferred from electronic annotation /// 0032760 // positive regulation of tumor necrosis factor production // not recorded /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0032874 // positive regulation of stress-activated MAPK cascade // inferred from electronic annotation /// 0032874 // positive regulation of stress-activated MAPK cascade // not recorded /// 0042116 // macrophage activation // inferred from electronic annotation /// 0042116 // macrophage activation // not recorded /// 0042346 // positive regulation of NF-kappaB import into nucleus // inferred from electronic annotation /// 0042346 // positive regulation of NF-kappaB import into nucleus // not recorded /// 0042535 // positive regulation of tumor necrosis factor biosynthetic process // inferred from electronic annotation /// 0042535 // positive regulation of tumor necrosis factor biosynthetic process // not recorded /// 0042742 // defense response to bacterium // inferred from direct assay /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043388 // positive regulation of DNA binding // inferred from mutant phenotype /// 0045084 // positive regulation of interleukin-12 biosynthetic process // inferred from electronic annotation /// 0045084 // positive regulation of interleukin-12 biosynthetic process // not recorded /// 0045087 // innate immune response // traceable author statement /// 0045087 // innate immune response // inferred from electronic annotation /// 0045348 // positive regulation of MHC class II biosynthetic process // inferred from electronic annotation /// 0045348 // positive regulation of MHC class II biosynthetic process // not recorded /// 0045359 // positive regulation of interferon-beta biosynthetic process // inferred from electronic annotation /// 0045359 // positive regulation of interferon-beta biosynthetic process // not recorded /// 0045416 // positive regulation of interleukin-8 biosynthetic process // inferred from electronic annotation /// 0045416 // positive regulation of interleukin-8 biosynthetic process // not recorded /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045429 // positive regulation of nitric oxide biosynthetic process // not recorded /// 0045471 // response to ethanol // inferred from mutant phenotype /// 0046330 // positive regulation of JNK cascade // inferred from electronic annotation /// 0046330 // positive regulation of JNK cascade // not recorded /// 0050671 // positive regulation of lymphocyte proliferation // not recorded /// 0050671 // positive regulation of lymphocyte proliferation // inferred from electronic annotation /// 0050727 // regulation of inflammatory response // not recorded /// 0050729 // positive regulation of inflammatory response // inferred from mutant phenotype /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050829 // defense response to Gram-negative bacterium // inferred from electronic annotation /// 0050829 // defense response to Gram-negative bacterium // not recorded /// 0051091 // positive regulation of transcription factor activity // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051770 // positive regulation of nitric-oxide synthase biosynthetic process // not recorded /// 0051930 // regulation of sensory perception of pain // inferred from mutant phenotype /// 0052033 // pathogen-associated molecular pattern dependent induction by symbiont of host innate immunity // inferred from direct assay /// 0060729 // intestinal epithelial structure maintenance // not recorded /// 0060907 // positive regulation of macrophage cytokine production // inferred from electronic annotation /// 0060907 // positive regulation of macrophage cytokine production // not recorded /// 0070373 // negative regulation of ERK1 and ERK2 cascade // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded /// 0070430 // positive regulation of nucleotide-binding oligomerization domain containing 1 signaling pathway // inferred from electronic annotation /// 0070430 // positive regulation of nucleotide-binding oligomerization domain containing 1 signaling pathway // not recorded /// 0070434 // positive regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway // inferred from electronic annotation /// 0070434 // positive regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway // not recorded /// 0070542 // response to fatty acid // inferred from direct assay /// 0071222 // cellular response to lipopolysaccharide // not recorded /// 0071223 // cellular response to lipoteichoic acid // inferred from electronic annotation /// 0071223 // cellular response to lipoteichoic acid // not recorded /// 0071260 // cellular response to mechanical stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // traceable author statement /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031224 // intrinsic to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0046696 // lipopolysaccharide receptor complex // not recorded /// 0046696 // lipopolysaccharide receptor complex // inferred from sequence or structural similarity /// 0046696 // lipopolysaccharide receptor complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0001530 // lipopolysaccharide binding // inferred from direct assay /// 0001530 // lipopolysaccharide binding // not recorded /// 0001875 // lipopolysaccharide receptor activity // not recorded /// 0001875 // lipopolysaccharide receptor activity // inferred from sequence or structural similarity /// 0001875 // lipopolysaccharide receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from direct assay /// 0004872 // receptor activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction 1387983_at J03933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J03933.1 /DB_XREF=gi:203418 /FEA=FLmRNA /CNT=4 /TID=Rn.10018.1 /TIER=FL /STK=1 /UG=Rn.10018 /LL=24831 /UG_GENE=Thrb /UG_TITLE=Thyroid hormone receptor, beta (avian erythroblastic leukemia viral (v-erb-a) oncogene homolog 2) /DEF=Rat thyroid receptor hormone beta (c-erbA-beta) mRNA, complete cds. /FL=gb:J03933.1 gb:J03819.1 J03933 thyroid hormone receptor beta Thrb 24831 NM_012672 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007621 // negative regulation of female receptivity // not recorded /// 0007621 // negative regulation of female receptivity // inferred from electronic annotation /// 0008016 // regulation of heart contraction // not recorded /// 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0008050 // female courtship behavior // not recorded /// 0008050 // female courtship behavior // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0019216 // regulation of lipid metabolic process // inferred from direct assay /// 0032332 // positive regulation of chondrocyte differentiation // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045778 // positive regulation of ossification // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048568 // embryonic organ development // inferred from expression pattern /// 0090181 // regulation of cholesterol metabolic process // inferred from mutant phenotype /// 0090207 // regulation of triglyceride metabolic process // inferred from mutant phenotype 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // traceable author statement /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0004887 // thyroid hormone receptor activity // inferred from direct assay /// 0004887 // thyroid hormone receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387984_at AF253065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF253065.2 /DB_XREF=gi:17105379 /GEN=CKLF2 /FEA=FLmRNA /CNT=3 /TID=Rn.81197.1 /TIER=FL /STK=2 /UG=Rn.81197 /DEF=Rattus norvegicus chemokine-like factor 2 (CKLF2) mRNA, complete cds. /PROD=chemokine-like factor 2 /FL=gb:AF253065.2 AF253065 chemokine-like factor Cklf 245978 NM_139111 0006935 // chemotaxis // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0030593 // neutrophil chemotaxis // inferred from direct assay /// 0030593 // neutrophil chemotaxis // not recorded /// 0030595 // leukocyte chemotaxis // inferred from direct assay /// 0032940 // secretion by cell // not recorded /// 0048246 // macrophage chemotaxis // not recorded /// 0048247 // lymphocyte chemotaxis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // not recorded 1387985_a_at AB039825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB039825.1 /DB_XREF=gi:8307689 /FEA=FLmRNA /CNT=3 /TID=Rn.81155.3 /TIER=FL /STK=1 /UG=Rn.81155 /LL=117104 /UG_GENE=Ppp2r2a /DEF=Rattus norvegicus mRNA for alpha-2u globulin, complete cds, clone:PGCL4. /PROD=alpha-2u globulin /FL=gb:AB039825.1 AB039825 alpha-2u globulin PGCL4 Obp3 259247 NM_001033958 /// NM_001033959 /// NM_147215 0006810 // transport // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005549 // odorant binding // inferred from direct assay /// 0005550 // pheromone binding // inferred from electronic annotation 1387986_at U37539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U37539.1 /DB_XREF=gi:2148913 /GEN=rEnacg /FEA=FLmRNA /CNT=5 /TID=Rn.10360.1 /TIER=FL /STK=2 /UG=Rn.10360 /LL=24768 /DEF=Rattus norvegicus strain SHRSPHD epithelial sodium channel, gamma subunit (rEnacg) mRNA, complete cds. /PROD=epithelial sodium channel, gamma subunit /FL=gb:U37540.1 gb:U37539.1 U37539 sodium channel, nonvoltage-gated 1, gamma Scnn1g 24768 NM_017046 0001666 // response to hypoxia // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from mutant phenotype /// 0006814 // sodium ion transport // not recorded /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0035313 // wound healing, spreading of epidermal cells // inferred from mutant phenotype /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from mutant phenotype /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0034706 // sodium channel complex // inferred from electronic annotation /// 0034706 // sodium channel complex // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // not recorded /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0015280 // ligand-gated sodium channel activity // inferred from direct assay /// 0015280 // ligand-gated sodium channel activity // inferred from mutant phenotype /// 0015280 // ligand-gated sodium channel activity // not recorded /// 0015280 // ligand-gated sodium channel activity // inferred from electronic annotation /// 0050699 // WW domain binding // inferred from physical interaction /// 0050699 // WW domain binding // not recorded /// 0050699 // WW domain binding // inferred from electronic annotation 1387987_at AB051836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB051836.1 /DB_XREF=gi:17221619 /FEA=FLmRNA /CNT=3 /TID=Rn.18845.1 /TIER=FL /STK=2 /UG=Rn.18845 /DEF=Rattus norvegicus mRNA for organic anion transporter 5, complete cds. /PROD=organic anion transporter 5 /FL=gb:AB051836.1 AB051836 solute carrier family 22 (organic anion transporter), member 9 Slc22a9 286961 NM_173302 0002238 // response to molecule of fungal origin // inferred from direct assay /// 0015711 // organic anion transport // not recorded /// 0015711 // organic anion transport // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0016324 // apical plasma membrane // inferred from direct assay 0008514 // organic anion transmembrane transporter activity // inferred from direct assay /// 0008514 // organic anion transmembrane transporter activity // not recorded /// 0008514 // organic anion transmembrane transporter activity // inferred from electronic annotation /// 0019534 // toxin transporter activity // inferred from electronic annotation /// 0019534 // toxin transporter activity // not recorded 1387988_at L17138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L17138.1 /DB_XREF=gi:388200 /FEA=FLmRNA /CNT=3 /TID=Rn.37466.1 /TIER=FL /STK=2 /UG=Rn.37466 /DEF=Rattus norvegicus 3beta-hydroxysteroid dehydrogenasedelta5-delta4 isomerase (3beta-HSD) mRNA, complete cds. /PROD=3 hydroxysteroid dehydrogenase /FL=gb:L17138.1 L17138 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 6 Hsd3b6 29632 NM_017265 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005758 // mitochondrial intermembrane space // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003854 // 3-beta-hydroxy-delta5-steroid dehydrogenase activity // inferred from electronic annotation /// 0004769 // steroid delta-isomerase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016853 // isomerase activity // traceable author statement /// 0016853 // isomerase activity // inferred from electronic annotation /// 0030283 // 3(or 17)beta-hydroxysteroid dehydrogenase activity // traceable author statement 1387989_at D13963 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D13963.1 /DB_XREF=gi:391856 /FEA=FLmRNA /CNT=2 /TID=Rn.44615.1 /TIER=FL /STK=2 /UG=Rn.44615 /LL=24419 /UG_GENE=Grm6 /DEF=Rattus norvegicus mRNA for metabotropic glutamate receptor subtype, complete cds. /PROD=metabotropic glutamate receptor subtype /FL=gb:D13963.1 D13963 glutamate receptor, metabotropic 6 Grm6 24419 NM_022920 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007196 // inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway // inferred from direct assay /// 0007268 // synaptic transmission // inferred from expression pattern /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050953 // sensory perception of light stimulus // inferred from electronic annotation /// 0050953 // sensory perception of light stimulus // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0001640 // adenylate cyclase inhibiting metabotropic glutamate receptor activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1387990_at D89996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D89996.1 /DB_XREF=gi:2605631 /FEA=FLmRNA /CNT=2 /TID=Affx.1.38 /TIER=FL /STK=2 /NOTE=sequence(s) not in UniGene /DEF=Rattus sp. mRNA for NTAK alpha2, complete cds. /PROD=NTAK alpha2 /FL=gb:D89996.1 gb:D89995.1 D89996 neuregulin 2 Nrg2 432361 NM_001136151 0007173 // epidermal growth factor receptor signaling pathway // inferred from direct assay /// 0009790 // embryo development // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005006 // epidermal growth factor receptor activity // inferred from direct assay /// 0005102 // receptor binding // inferred from electronic annotation /// 0005154 // epidermal growth factor receptor binding // inferred from direct assay /// 0008083 // growth factor activity // inferred from electronic annotation /// 0043125 // ErbB-3 class receptor binding // inferred from direct assay 1387991_at D14480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D14480.1 /DB_XREF=gi:441201 /GEN=cls4 /FEA=FLmRNA /CNT=2 /TID=Rn.76727.1 /TIER=FL /STK=2 /UG=Rn.76727 /LL=170808 /DEF=Rat mRNA for calpain, complete cds. /PROD=calpain /FL=gb:D14480.1 D14480 calpain 8 Capn8 170808 NM_133309 0006508 // proteolysis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1387992_at AF169637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF169637.1 /DB_XREF=gi:5758942 /GEN=Pir-A1 /FEA=FLmRNA /CNT=2 /TID=Rn.48719.1 /TIER=FL /STK=2 /UG=Rn.48719 /DEF=Rattus norvegicus paired Ig-like receptor-A1 (Pir-A1) mRNA, complete cds. /PROD=paired Ig-like receptor-A1 /FL=gb:AF169638.1 gb:AF169637.1 AF169637 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3-like Lilrb3l 361493 NM_001037357 1387993_at AF159245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF159245.2 /DB_XREF=gi:15826837 /FEA=FLmRNA /CNT=2 /TID=Rn.38261.1 /TIER=FL /STK=2 /UG=Rn.38261 /DEF=Rattus norvegicus cytochrome P450 CYP2B21 mRNA, complete cds. /PROD=cytochrome P450 CYP2B21 /FL=gb:AF159245.2 AF159245 cytochrome P450, family 2, subfamily b, polypeptide 21 Cyp2b21 292728 NM_198733 0006805 // xenobiotic metabolic process // non-traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0019825 // oxygen binding // non-traceable author statement /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1387994_at U89280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U89280.1 /DB_XREF=gi:2661212 /FEA=FLmRNA /CNT=2 /TID=Rn.10857.1 /TIER=FL /STK=2 /UG=Rn.10857 /DEF=Rattus norvegicus oxidative 17 beta hydroxysteroid dehydrogenase type 6 mRNA, complete cds. /PROD=oxidative 17 beta hydroxysteroid dehydrogenasetype 6 /FL=gb:U89280.1 U89280 hydroxysteroid (17-beta) dehydrogenase 6 Hsd17b6 286964 NM_173305 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008209 // androgen metabolic process // traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004303 // estradiol 17-beta-dehydrogenase activity // inferred from electronic annotation /// 0004745 // retinol dehydrogenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0047035 // 3-alpha(17-beta)-hydroxysteroid dehydrogenase (NAD+) activity // traceable author statement /// 0050327 // testosterone 17-beta-dehydrogenase activity // inferred from electronic annotation 1387995_a_at BI285494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285494 /DB_XREF=gi:14939190 /DB_XREF=UI-R-DD0-caa-g-09-0-UI.s1 /CLONE=UI-R-DD0-caa-g-09-0-UI /FEA=EST /CNT=15 /TID=Rn.6945.2 /TIER=Stack /STK=11 /UG=Rn.6945 /UG_TITLE=Rattus norvegicus interferon-inducible protein variant 10 mRNA, complete cds BI285494 interferon induced transmembrane protein 3 Ifitm3 361673 NM_001136124 0008285 // negative regulation of cell proliferation // not recorded /// 0009607 // response to biotic stimulus // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded 1387996_a_at AF333326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF333326.1 /DB_XREF=gi:13649929 /GEN=Hps /FEA=FLmRNA /CNT=2 /TID=Rn.17691.2 /TIER=FL /STK=2 /UG=Rn.17691 /LL=114638 /DEF=Rattus norvegicus Hermansky-Pudlak syndrome protein variant (Hps) mRNA, complete cds, alternatively spliced. /PROD=Hermansky-Pudlak syndrome protein variant /FL=gb:AF333326.1 AF333326 Hermansky-Pudlak syndrome 1 homolog (human) Hps1 114638 NM_040669 0006996 // organelle organization // not recorded /// 0007596 // blood coagulation // not recorded /// 0030318 // melanocyte differentiation // not recorded /// 0032816 // positive regulation of natural killer cell activation // not recorded /// 0033299 // secretion of lysosomal enzymes // not recorded /// 0043473 // pigmentation // not recorded 0016023 // cytoplasmic membrane-bounded vesicle // not recorded 0005515 // protein binding // not recorded /// 0046983 // protein dimerization activity // not recorded 1387997_at AF247453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF247453.1 /DB_XREF=gi:7407650 /GEN=HCN4 /FEA=FLmRNA /CNT=4 /TID=Rn.41082.1 /TIER=FL /STK=1 /UG=Rn.41082 /LL=59266 /DEF=Rattus norvegicus hyperpolarization-activated, cyclic nucleotide-gated potassium channel 4 (HCN4) mRNA, complete cds. /PROD=hyperpolarization-activated, cyclicnucleotide-gated potassium channel 4 /FL=gb:AF247453.1 AF247453 hyperpolarization activated cyclic nucleotide-gated potassium channel 4 Hcn4 59266 NM_021658 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0008016 // regulation of heart contraction // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0050804 // regulation of synaptic transmission // traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043195 // terminal button // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005222 // intracellular cAMP activated cation channel activity // inferred from electronic annotation /// 0005222 // intracellular cAMP activated cation channel activity // not recorded /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // traceable author statement /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030552 // cAMP binding // inferred from electronic annotation 1387998_at AF032669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF032669.1 /DB_XREF=gi:2827163 /FEA=FLmRNA /CNT=4 /TID=Rn.10901.1 /TIER=FL /STK=1 /UG=Rn.10901 /DEF=Rattus norvegicus exo84 mRNA, complete cds. /PROD=exo84 /FL=gb:AF032669.1 AF032669 exocyst complex component 8 Exoc8 245709 NM_139043 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // traceable author statement /// 0006887 // exocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0000145 // exocyst // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation 1387999_at M97380 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M97380.1 /DB_XREF=gi:203428 /GEN=CGAT /FEA=FLmRNA /CNT=4 /TID=Rn.11009.1 /TIER=FL /STK=1 /UG=Rn.11009 /LL=25693 /DEF=Rattus norvegicus chromaffin granule amine transporter (CGAT) mRNA, complete cds. /PROD=chromaffin granule amine transporter /FL=gb:M97380.1 M97380 solute carrier family 18 (vesicular monoamine), member 1 Slc18a1 25693 NM_013152 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0015893 // drug transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0015238 // drug transmembrane transporter activity // inferred from electronic annotation 1388000_at AF021923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF021923.1 /DB_XREF=gi:2662460 /GEN=NCKX2 /FEA=FLmRNA /CNT=9 /TID=Rn.74242.1 /TIER=FL /STK=1 /UG=Rn.74242 /LL=84550 /DEF=Rattus norvegicus potassium-dependent sodium-calcium exchanger (NCKX2) mRNA, complete cds. /PROD=potassium-dependent sodium-calcium exchanger /FL=gb:AF021923.1 AF021923 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 Slc24a2 84550 NM_031743 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0007601 // visual perception // inferred from electronic annotation /// 0007612 // learning // inferred from electronic annotation /// 0007612 // learning // not recorded /// 0007613 // memory // inferred from electronic annotation /// 0007613 // memory // not recorded /// 0050896 // response to stimulus // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060291 // long-term synaptic potentiation // inferred from electronic annotation /// 0060291 // long-term synaptic potentiation // not recorded /// 0060292 // long term synaptic depression // inferred from electronic annotation /// 0060292 // long term synaptic depression // not recorded /// 0070588 // calcium ion transmembrane transport // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005262 // calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // not recorded /// 0008273 // calcium, potassium:sodium antiporter activity // traceable author statement /// 0015293 // symporter activity // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from mutant phenotype 1388001_at AB028461 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB028461.1 /DB_XREF=gi:7861532 /FEA=FLmRNA /CNT=5 /TID=Rn.20309.1 /TIER=FL /STK=1 /UG=Rn.20309 /DEF=Rattus norvegicus mRNA for retina specific protein PAL, complete cds. /PROD=retina specific protein PAL /FL=gb:AB028461.1 AB028461 leucine-rich repeat, immunoglobulin-like and transmembrane domains 1 Lrit1 246214 NM_139331 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 1388002_at AF084205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF084205.1 /DB_XREF=gi:3452472 /FEA=FLmRNA /CNT=4 /TID=Rn.30050.1 /TIER=FL /STK=1 /UG=Rn.30050 /DEF=Rattus norvegicus serinethreonine protein kinase TAO1 mRNA, complete cds. /PROD=serinethreonine protein kinase TAO1 /FL=gb:AF084205.1 AF084205 TAO kinase 1 Taok1 286993 NM_173327 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from mutant phenotype /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from direct assay /// 0030295 // protein kinase activator activity // inferred from mutant phenotype 1388003_at M34238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M34238.1 /DB_XREF=gi:203356 /FEA=FLmRNA /CNT=4 /TID=Rn.10747.1 /TIER=FL /STK=1 /UG=Rn.10747 /LL=29508 /UG_GENE=Nfya /UG_TITLE=nuclear transcription factor-Y alpha /DEF=Rat CCAAT binding transcription factor-B subunit (CBF-B) mRNA, complete cds. /FL=gb:M34238.1 M34238 nuclear transcription factor-Y alpha Nfya 29508 NM_012865 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016602 // CCAAT-binding factor complex // inferred from electronic annotation /// 0016602 // CCAAT-binding factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded 1388004_at AF087947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF087947.1 /DB_XREF=gi:5880456 /FEA=FLmRNA /CNT=3 /TID=Rn.48760.1 /TIER=FL /STK=1 /UG=Rn.48760 /DEF=Rattus norvegicus G protein-coupled receptor GPCRCNS2 mRNA, complete cds. /PROD=G protein-coupled receptor GPCRCNS2 /FL=gb:AF087947.1 AF087947 G protein-coupled receptor 37-like 1 Gpr37l1 252939 NM_145784 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1388005_at AF244920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF244920.1 /DB_XREF=gi:7271970 /FEA=FLmRNA /CNT=3 /TID=Rn.46890.1 /TIER=FL /STK=1 /UG=Rn.46890 /LL=171552 /UG_GENE=LOC171552 /DEF=Rattus norvegicus potassium channel regulatory factor mRNA, complete cds. /PROD=potassium channel regulatory factor /FL=gb:AF244920.1 AF244920 PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae) Prpf18 171552 NM_138523 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0019870 // potassium channel inhibitor activity // inferred from mutant phenotype 1388006_at U89744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U89744.1 /DB_XREF=gi:1890274 /FEA=FLmRNA /CNT=3 /TID=Rn.10719.1 /TIER=FL /STK=1 /UG=Rn.10719 /DEF=Rattus norvegicus putative cell surface antigen mRNA, complete cds. /PROD=putative cell surface antigen /FL=gb:U89744.1 U89744 mucin 13, cell surface associated Muc13 207126 NM_139041 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1388007_x_at U07054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U07054.1 /DB_XREF=gi:460925 /GEN=Amel /FEA=FLmRNA /CNT=1 /TID=Rn.11368.5 /TIER=FL /STK=1 /UG=Rn.11368 /LL=29160 /DEF=Rattus norvegicus leucine-rich amelogenin peptide precursor (Amel) mRNA, complete cds. /PROD=leucine-rich amelogenin peptide precursor /FL=gb:U07054.1 U07054 amelogenin X chromosome Amelx 29160 NM_019154 0007155 // cell adhesion // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from expression pattern /// 0008283 // cell proliferation // not recorded /// 0031214 // biomineral tissue development // inferred from electronic annotation /// 0034505 // tooth mineralization // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0051592 // response to calcium ion // inferred from expression pattern /// 0070166 // enamel mineralization // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005604 // basement membrane // not recorded /// 0005604 // basement membrane // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0030139 // endocytic vesicle // inferred from expression pattern /// 0031012 // extracellular matrix // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0030345 // structural constituent of tooth enamel // inferred from direct assay /// 0030345 // structural constituent of tooth enamel // not recorded /// 0030345 // structural constituent of tooth enamel // traceable author statement /// 0042802 // identical protein binding // inferred from direct assay /// 0042802 // identical protein binding // not recorded /// 0043498 // cell surface binding // not recorded /// 0046848 // hydroxyapatite binding // not recorded 1388008_at AF091715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF091715.1 /DB_XREF=gi:3641600 /GEN=TRHR-2 /FEA=FLmRNA /CNT=5 /TID=Rn.30031.1 /TIER=FL /STK=1 /UG=Rn.30031 /DEF=Rattus norvegicus thyrotropin releasing hormone receptor-2 (TRHR-2) mRNA, complete cds. /PROD=thyrotropin releasing hormone receptor-2 /FL=gb:AF091715.1 gb:AB015645.1 AF091715 thyrotropin releasing hormone receptor 2 Trhr2 252859 NM_181364 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004997 // thyrotropin-releasing hormone receptor activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388009_at AB015645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB015645.1 /DB_XREF=gi:3660553 /FEA=FLmRNA /CNT=5 /TID=Rn.30031.1 /TIER=FL /STK=1 /UG=Rn.30031 /DEF=Rattus norvegicus mRNA for G protein-coupled receptor, complete cds. /PROD=G protein-coupled receptor /FL=gb:AF091715.1 gb:AB015645.1 AB015645 thyrotropin releasing hormone receptor 2 Trhr2 252859 NM_181364 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from electronic annotation /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004997 // thyrotropin-releasing hormone receptor activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388010_at AF303035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF303035.1 /DB_XREF=gi:11992033 /FEA=FLmRNA /CNT=3 /TID=Rn.54966.1 /TIER=FL /STK=1 /UG=Rn.54966 /DEF=Rattus norvegicus antisense RNA overlapping MCH protein mRNA, complete cds. /PROD=antisense RNA overlapping MCH protein /FL=gb:AF303035.1 AF303035 antisense RNA overlapping MCH LOC100310874 100310874 NM_001166676 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1388011_a_at AF135598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF135598.1 /DB_XREF=gi:4580714 /FEA=FLmRNA /CNT=3 /TID=Rn.24539.2 /TIER=FL /STK=1 /UG=Rn.24539 /LL=81809 /UG_GENE=Tgfb2 /DEF=Rattus norvegicus transforming growth factor beta 2 precursor, mRNA, complete cds. /PROD=transforming growth factor beta 2 precursor /FL=gb:AF153013.1 gb:AF135598.1 AF135598 transforming growth factor, beta 2 Tgfb2 81809 NM_031131 0000902 // cell morphogenesis // not recorded /// 0000902 // cell morphogenesis // inferred from sequence or structural similarity /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001502 // cartilage condensation // inferred from electronic annotation /// 0001502 // cartilage condensation // not recorded /// 0001558 // regulation of cell growth // traceable author statement /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001654 // eye development // not recorded /// 0001654 // eye development // inferred from sequence or structural similarity /// 0001666 // response to hypoxia // not recorded /// 0001822 // kidney development // inferred from expression pattern /// 0001837 // epithelial to mesenchymal transition // not recorded /// 0001942 // hair follicle development // not recorded /// 0001942 // hair follicle development // inferred from sequence or structural similarity /// 0001942 // hair follicle development // inferred from electronic annotation /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0001974 // blood vessel remodeling // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006924 // activation-induced cell death of T cells // inferred from electronic annotation /// 0006924 // activation-induced cell death of T cells // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007184 // SMAD protein nuclear translocation // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007435 // salivary gland morphogenesis // not recorded /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from sequence or structural similarity /// 0007507 // heart development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from expression pattern /// 0007565 // female pregnancy // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008219 // cell death // not recorded /// 0008219 // cell death // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0008347 // glial cell migration // not recorded /// 0009314 // response to radiation // inferred from expression pattern /// 0009409 // response to cold // inferred from expression pattern /// 0009611 // response to wounding // not recorded /// 0010002 // cardioblast differentiation // not recorded /// 0010002 // cardioblast differentiation // inferred from sequence or structural similarity /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010634 // positive regulation of epithelial cell migration // not recorded /// 0010693 // negative regulation of alkaline phosphatase activity // not recorded /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0016049 // cell growth // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0022601 // menstrual cycle phase // not recorded /// 0030097 // hemopoiesis // not recorded /// 0030097 // hemopoiesis // inferred from sequence or structural similarity /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030199 // collagen fibril organization // not recorded /// 0030307 // positive regulation of cell growth // not recorded /// 0030307 // positive regulation of cell growth // inferred from sequence or structural similarity /// 0030308 // negative regulation of cell growth // not recorded /// 0030324 // lung development // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030593 // neutrophil chemotaxis // inferred from sequence or structural similarity /// 0030878 // thyroid gland development // inferred from expression pattern /// 0030902 // hindbrain development // inferred from expression pattern /// 0031016 // pancreas development // inferred from expression pattern /// 0031069 // hair follicle morphogenesis // not recorded /// 0031069 // hair follicle morphogenesis // inferred from sequence or structural similarity /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0032147 // activation of protein kinase activity // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032570 // response to progesterone stimulus // not recorded /// 0032874 // positive regulation of stress-activated MAPK cascade // not recorded /// 0032909 // regulation of transforming growth factor-beta2 production // not recorded /// 0033280 // response to vitamin D // inferred from expression pattern /// 0033630 // positive regulation of cell adhesion mediated by integrin // not recorded /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0034616 // response to laminar fluid shear stress // inferred from expression pattern /// 0040007 // growth // inferred from electronic annotation /// 0042060 // wound healing // inferred from expression pattern /// 0042060 // wound healing // inferred from mutant phenotype /// 0042060 // wound healing // inferred from sequence or structural similarity /// 0042127 // regulation of cell proliferation // traceable author statement /// 0042416 // dopamine biosynthetic process // not recorded /// 0042416 // dopamine biosynthetic process // inferred from sequence or structural similarity /// 0042416 // dopamine biosynthetic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042637 // catagen // not recorded /// 0042637 // catagen // inferred from sequence or structural similarity /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0043525 // positive regulation of neuron apoptosis // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from sequence or structural similarity /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0045216 // cell-cell junction organization // not recorded /// 0045726 // positive regulation of integrin biosynthetic process // not recorded /// 0045778 // positive regulation of ossification // not recorded /// 0045787 // positive regulation of cell cycle // not recorded /// 0045787 // positive regulation of cell cycle // inferred from sequence or structural similarity /// 0045787 // positive regulation of cell cycle // inferred from electronic annotation /// 0045823 // positive regulation of heart contraction // not recorded /// 0045823 // positive regulation of heart contraction // inferred from sequence or structural similarity /// 0048103 // somatic stem cell division // not recorded /// 0048103 // somatic stem cell division // inferred from sequence or structural similarity /// 0048103 // somatic stem cell division // inferred from electronic annotation /// 0048565 // digestive tract development // inferred from expression pattern /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0048666 // neuron development // not recorded /// 0048666 // neuron development // inferred from sequence or structural similarity /// 0048666 // neuron development // inferred from electronic annotation /// 0048702 // embryonic neurocranium morphogenesis // inferred from direct assay /// 0048839 // inner ear development // inferred from expression pattern /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050714 // positive regulation of protein secretion // not recorded /// 0050777 // negative regulation of immune response // inferred from direct assay /// 0050778 // positive regulation of immune response // inferred from sequence or structural similarity /// 0051280 // negative regulation of release of sequestered calcium ion into cytosol // inferred from direct assay /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0051795 // positive regulation of catagen // not recorded /// 0051795 // positive regulation of catagen // inferred from sequence or structural similarity /// 0051891 // positive regulation of cardioblast differentiation // not recorded /// 0051891 // positive regulation of cardioblast differentiation // inferred from sequence or structural similarity /// 0060038 // cardiac muscle cell proliferation // not recorded /// 0060038 // cardiac muscle cell proliferation // inferred from sequence or structural similarity /// 0060317 // cardiac epithelial to mesenchymal transition // not recorded /// 0060364 // frontal suture morphogenesis // inferred from expression pattern /// 0060389 // pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0060389 // pathway-restricted SMAD protein phosphorylation // not recorded 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region // inferred from electronic annotation /// 0005604 // basement membrane // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from sequence or structural similarity /// 0030424 // axon // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded /// 0031093 // platelet alpha granule lumen // not recorded /// 0043025 // neuronal cell body // not recorded /// 0043025 // neuronal cell body // inferred from sequence or structural similarity /// 0043025 // neuronal cell body // inferred from electronic annotation 0001540 // beta-amyloid binding // not recorded /// 0001540 // beta-amyloid binding // inferred from sequence or structural similarity /// 0004702 // receptor signaling protein serine/threonine kinase activity // not recorded /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from sequence or structural similarity /// 0005114 // type II transforming growth factor beta receptor binding // not recorded /// 0005160 // transforming growth factor beta receptor binding // not recorded /// 0005160 // transforming growth factor beta receptor binding // inferred from sequence or structural similarity /// 0005160 // transforming growth factor beta receptor binding // traceable author statement /// 0005160 // transforming growth factor beta receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from mutant phenotype 1388012_at U29174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U29174.1 /DB_XREF=gi:1184126 /GEN=DRG11 /FEA=FLmRNA /CNT=3 /TID=Rn.10189.1 /TIER=FL /STK=1 /UG=Rn.10189 /DEF=Rattus norvegicus paired-like homeodomain transcription factor (DRG11) mRNA, complete cds. /PROD=paired-like homeodomain transcription factor /FL=gb:U29174.1 U29174 paired related homeobox protein-like 1 Prrxl1 252880 NM_145767 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0009593 // detection of chemical stimulus // inferred from electronic annotation /// 0009593 // detection of chemical stimulus // not recorded /// 0016048 // detection of temperature stimulus // inferred from electronic annotation /// 0016048 // detection of temperature stimulus // not recorded /// 0021516 // dorsal spinal cord development // inferred from electronic annotation /// 0021516 // dorsal spinal cord development // not recorded /// 0021559 // trigeminal nerve development // inferred from electronic annotation /// 0021559 // trigeminal nerve development // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0050954 // sensory perception of mechanical stimulus // inferred from electronic annotation /// 0050954 // sensory perception of mechanical stimulus // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1388013_at AF010465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF010465.1 /DB_XREF=gi:2317781 /GEN=B7.1 /FEA=FLmRNA /CNT=3 /TID=Rn.10138.1 /TIER=FL /STK=1 /UG=Rn.10138 /LL=25408 /DEF=Rattus norvegicus B7.1 (B7.1) mRNA, complete cds. /PROD=B7.1 /FL=gb:AF010465.1 gb:U05593.1 gb:U88622.1 AF010465 Cd80 molecule Cd80 25408 NM_012926 0031295 // T cell costimulation // not recorded /// 0031295 // T cell costimulation // inferred from electronic annotation /// 0046641 // positive regulation of alpha-beta T cell proliferation // not recorded /// 0046641 // positive regulation of alpha-beta T cell proliferation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1388014_at J03093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J03093.1 /DB_XREF=gi:205801 /FEA=FLmRNA /CNT=3 /TID=Rn.9718.1 /TIER=FL /STK=1 /UG=Rn.9718 /UG_TITLE=Rat odorant-binding protein mRNA, complete cds /DEF=Rat odorant-binding protein mRNA, complete cds. /FL=gb:J03093.1 J03093 odorant binding protein I f Obp1f 192267 NM_138903 0006810 // transport // inferred from electronic annotation /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005549 // odorant binding // inferred from direct assay /// 0005549 // odorant binding // inferred from electronic annotation 1388015_at U04998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U04998.1 /DB_XREF=gi:461371 /FEA=FLmRNA /CNT=2 /TID=Rn.10088.2 /TIER=FL /STK=1 /UG=Rn.10088 /LL=25613 /UG_GENE=Ptprz1 /DEF=Rattus norvegicus Sprague-Dawley phosphacan mRNA, complete cds. /PROD=phosphacan (3F8 proteoglycan) /FL=gb:U04998.1 U04998 protein tyrosine phosphatase, receptor-type, Z polypeptide 1 Ptprz1 25613 NM_001170685 /// NM_013080 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1388016_a_at AF112182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF112182.1 /DB_XREF=gi:4731286 /FEA=FLmRNA /CNT=1 /TID=Rn.15680.3 /TIER=FL /STK=1 /UG=Rn.15680 /LL=171571 /UG_GENE=Grip2 /DEF=Rattus norvegicus glutamate receptor interacting protein 2 mRNA, complete cds. /PROD=glutamate receptor interacting protein 2 /FL=gb:AF112182.1 AF112182 glutamate receptor interacting protein 2 Grip2 171571 NM_138535 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043198 // dendritic shaft // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from physical interaction 1388017_at L37380 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L37380.1 /DB_XREF=gi:642652 /FEA=FLmRNA /CNT=2 /TID=Rn.10059.1 /TIER=FL /STK=1 /UG=Rn.10059 /DEF=Rat apical endosomal glycoprotein mRNA, complete cds. /PROD=apical endosomal glycoprotein /FL=gb:L37380.1 L37380 MAM domain containing 4 Mamdc4 252882 NM_145768 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005768 // endosome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1388018_at L25527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L25527.1 /DB_XREF=gi:409234 /GEN=ELAM-1 /FEA=FLmRNA /CNT=2 /TID=Rn.10359.1 /TIER=FL /STK=1 /UG=Rn.10359 /LL=25544 /DEF=Rattus norvegicus E-selectin (ELAM-1) mRNA, complete cds. /PROD=E-selectin /FL=gb:L25527.1 L25527 selectin E Sele 25544 NM_138879 0002092 // positive regulation of receptor internalization // not recorded /// 0002687 // positive regulation of leukocyte migration // not recorded /// 0006954 // inflammatory response // inferred from mutant phenotype /// 0006954 // inflammatory response // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0007157 // heterophilic cell-cell adhesion // not recorded /// 0007159 // leukocyte cell-cell adhesion // not recorded /// 0007202 // activation of phospholipase C activity // not recorded /// 0030029 // actin filament-based process // not recorded /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0050900 // leukocyte migration // inferred from expression pattern /// 0050901 // leukocyte tethering or rolling // not recorded /// 0070555 // response to interleukin-1 // not recorded 0005615 // extracellular space // not recorded /// 0005901 // caveola // not recorded /// 0005905 // coated pit // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // not recorded /// 0045121 // membrane raft // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0004888 // transmembrane receptor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0033691 // sialic acid binding // not recorded /// 0043274 // phospholipase binding // not recorded /// 0070492 // oligosaccharide binding // not recorded 1388019_at AF162756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF162756.2 /DB_XREF=gi:17388905 /FEA=FLmRNA /CNT=2 /TID=Rn.11062.2 /TIER=FL /STK=1 /UG=Rn.11062 /LL=29479 /UG_GENE=Odf2 /DEF=Rattus norvegicus cenexin 2 mRNA, complete cds. /PROD=cenexin 2 /FL=gb:AF162756.2 AF162756 outer dense fiber of sperm tails 2 Odf2 29479 NM_001145005 /// NM_017213 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007286 // spermatid development // inferred from expression pattern /// 0030154 // cell differentiation // inferred from electronic annotation 0000922 // spindle pole // inferred from electronic annotation /// 0001520 // outer dense fiber // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005814 // centriole // inferred from electronic annotation /// 0005814 // centriole // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0019861 // flagellum // not recorded /// 0019861 // flagellum // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1388020_a_at AF328800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF328800.1 /DB_XREF=gi:13604202 /GEN=PDE1C /FEA=mRNA /CNT=1 /TID=Rn.10289.2 /TIER=ConsEnd /STK=0 /UG=Rn.10289 /LL=81742 /DEF=Rattus norvegicus clone 15 phosphodiesterase 1C (PDE1C) mRNA, partial cds. /PROD=phosphodiesterase 1C AF328800 phosphodiesterase 1C Pde1c 81742 NM_031078 0006198 // cAMP catabolic process // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007608 // sensory perception of smell // inferred from expression pattern /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0046069 // cGMP catabolic process // inferred from direct assay /// 0046676 // negative regulation of insulin secretion // inferred from mutant phenotype /// 0050896 // response to stimulus // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from direct assay 0005829 // cytosol // not recorded /// 0043025 // neuronal cell body // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0004115 // 3',5'-cyclic-AMP phosphodiesterase activity // inferred from direct assay /// 0004117 // calmodulin-dependent cyclic-nucleotide phosphodiesterase activity // inferred from direct assay /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030552 // cAMP binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048101 // calcium- and calmodulin-regulated 3',5'-cyclic-GMP phosphodiesterase activity // inferred from direct assay 1388021_at AF220608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF220608.1 /DB_XREF=gi:14279148 /GEN=Frp /FEA=FLmRNA /CNT=2 /TID=Rn.10788.2 /TIER=FL /STK=1 /UG=Rn.10788 /LL=89803 /DEF=Rattus norvegicus frizzled related protein (Frp) mRNA, complete cds. /PROD=frizzled related protein /FL=gb:AF220608.1 AF220608 secreted frizzled-related protein 4 Sfrp4 89803 NM_053544 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0016055 // Wnt receptor signaling pathway // traceable author statement /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0046329 // negative regulation of JNK cascade // inferred from direct assay /// 0046697 // decidualization // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0060056 // mammary gland involution // inferred from expression pattern /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0017147 // Wnt-protein binding // inferred from physical interaction /// 0017147 // Wnt-protein binding // not recorded /// 0017147 // Wnt-protein binding // inferred from electronic annotation 1388022_a_at AF132727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF132727.1 /DB_XREF=gi:4868357 /FEA=FLmRNA /CNT=2 /TID=Rn.10830.2 /TIER=FL /STK=1 /UG=Rn.10830 /LL=114114 /UG_GENE=Dnm1l /DEF=Rattus norvegicus dynamin-like protein DLP1 isoform DLP1-37 mRNA, complete cds. /PROD=dynamin-like protein DLP1 isoform DLP1-37 /FL=gb:AF132727.1 AF132727 dynamin 1-like Dnm1l 114114 NM_053655 0043653 // mitochondrial fragmentation involved in apoptosis // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // not recorded /// 0005777 // peroxisome // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1388023_a_at AF394941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF394941.1 /DB_XREF=gi:17864841 /FEA=FLmRNA /CNT=2 /TID=Rn.10739.2 /TIER=FL /STK=1 /UG=Rn.10739 /LL=116600 /UG_GENE=Cacnb2 /DEF=Rattus norvegicus L-type calcium channel beta-2c subunit mRNA, complete cds, alternatively spliced. /PROD=L-type calcium channel beta-2c subunit /FL=gb:AF394941.1 AF394941 calcium channel, voltage-dependent, beta 2 subunit Cacnb2 116600 NM_053851 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // traceable author statement /// 0007268 // synaptic transmission // not recorded /// 0007601 // visual perception // not recorded 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // inferred from direct assay /// 0005891 // voltage-gated calcium channel complex // inferred from mutant phenotype /// 0005891 // voltage-gated calcium channel complex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from direct assay /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // traceable author statement /// 0005246 // calcium channel regulator activity // inferred from direct assay /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388024_s_at U20286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U20286.1 /DB_XREF=gi:769858 /GEN=LAP1C /FEA=FLmRNA /CNT=2 /TID=Rn.64618.1 /TIER=FL /STK=1 /UG=Rn.64618 /DEF=Rattus norvegicus lamina associated polypeptide 1C (LAP1C) mRNA, complete cds. /PROD=lamina associated polypeptide 1C /FL=gb:U20286.1 U20286 torsin A interacting protein 1 Tor1aip1 246314 NM_145092 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay /// 0005635 // nuclear envelope // not recorded /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005521 // lamin binding // inferred from direct assay 1388025_at U63972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U63972.1 /DB_XREF=gi:1488319 /FEA=FLmRNA /CNT=2 /TID=Rn.10549.1 /TIER=FL /STK=1 /UG=Rn.10549 /LL=81644 /UG_GENE=Opn1sw /DEF=Rattus norvegicus blue cone opsin-like pigment mRNA, complete cds. /PROD=blue cone opsin-like pigment /FL=gb:U63972.1 gb:AF051163.1 U63972 opsin 1 (cone pigments), short-wave-sensitive Opn1sw 81644 NM_031015 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007601 // visual perception // inferred from electronic annotation /// 0007602 // phototransduction // inferred from electronic annotation /// 0018298 // protein-chromophore linkage // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0001750 // photoreceptor outer segment // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0009881 // photoreceptor activity // inferred from electronic annotation 1388026_at L08447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L08447.1 /DB_XREF=gi:203385 /FEA=FLmRNA /CNT=2 /TID=Rn.9997.1 /TIER=FL /STK=1 /UG=Rn.9997 /LL=25300 /UG_GENE=Cd3z /DEF=Rattus norvegicus T-cell receptor CD3 zeta subunit mRNA, complete cds. /PROD=T-cell receptor zeta chain /FL=gb:L08447.1 gb:D13555.1 L08447 Cd247 molecule Cd247 25300 NM_170789 0007166 // cell surface receptor linked signaling pathway // inferred from direct assay /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0042101 // T cell receptor complex // inferred from direct assay /// 0042101 // T cell receptor complex // not recorded /// 0042101 // T cell receptor complex // inferred from electronic annotation /// 0042105 // alpha-beta T cell receptor complex // inferred from electronic annotation /// 0042105 // alpha-beta T cell receptor complex // not recorded 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1388027_a_at AF051335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF051335.1 /DB_XREF=gi:6016998 /FEA=FLmRNA /CNT=2 /TID=Rn.1348.3 /TIER=FL /STK=1 /UG=Rn.1348 /LL=83765 /UG_GENE=Rtn4 /DEF=Rattus norvegicus GLUT4 vesicle 20kDa protein mRNA, complete cds. /PROD=GLUT4 vesicle 20kDa protein /FL=gb:AF051335.1 AF051335 reticulon 4 Rtn4 83765 NM_031831 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0007568 // aging // inferred from expression pattern /// 0010977 // negative regulation of neuron projection development // inferred from direct assay /// 0014823 // response to activity // inferred from expression pattern /// 0019987 // negative regulation of anti-apoptosis // not recorded /// 0019987 // negative regulation of anti-apoptosis // inferred from sequence or structural similarity /// 0019987 // negative regulation of anti-apoptosis // inferred from electronic annotation /// 0021553 // olfactory nerve development // inferred from expression pattern /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0030334 // regulation of cell migration // not recorded /// 0030517 // negative regulation of axon extension // not recorded /// 0030517 // negative regulation of axon extension // inferred from sequence or structural similarity /// 0030517 // negative regulation of axon extension // inferred from electronic annotation /// 0033603 // positive regulation of dopamine secretion // inferred from mutant phenotype /// 0045665 // negative regulation of neuron differentiation // inferred from direct assay /// 0045687 // positive regulation of glial cell differentiation // inferred from direct assay /// 0048679 // regulation of axon regeneration // inferred from direct assay /// 0048709 // oligodendrocyte differentiation // inferred from expression pattern /// 0050770 // regulation of axonogenesis // not recorded /// 0050771 // negative regulation of axonogenesis // inferred from direct assay /// 0050771 // negative regulation of axonogenesis // inferred from mutant phenotype /// 0050771 // negative regulation of axonogenesis // not recorded /// 0051930 // regulation of sensory perception of pain // inferred from direct assay /// 0060317 // cardiac epithelial to mesenchymal transition // not recorded /// 0070571 // negative regulation of neuron projection regeneration // inferred from mutant phenotype 0005635 // nuclear envelope // not recorded /// 0005635 // nuclear envelope // inferred from sequence or structural similarity /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // inferred from direct assay /// 0030176 // integral to endoplasmic reticulum membrane // not recorded /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation /// 0042995 // cell projection // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043025 // neuronal cell body // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043209 // myelin sheath // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay 1388028_at AF207605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF207605.1 /DB_XREF=gi:6581111 /GEN=Ttl /FEA=FLmRNA /CNT=2 /TID=Rn.42674.1 /TIER=FL /STK=1 /UG=Rn.42674 /LL=171572 /DEF=Rattus norvegicus tubulin tyrosine ligase (Ttl) mRNA, complete cds. /PROD=tubulin tyrosine ligase /FL=gb:AF207605.1 AF207605 tubulin tyrosine ligase Ttl 171572 NM_138536 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0000226 // microtubule cytoskeleton organization // not recorded /// 0006464 // protein modification process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0030516 // regulation of axon extension // inferred from electronic annotation /// 0030516 // regulation of axon extension // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004835 // tubulin-tyrosine ligase activity // inferred from direct assay /// 0004835 // tubulin-tyrosine ligase activity // not recorded /// 0004835 // tubulin-tyrosine ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1388029_at AF315467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF315467.1 /DB_XREF=gi:12964704 /FEA=FLmRNA /CNT=2 /TID=Rn.43017.1 /TIER=FL /STK=1 /UG=Rn.43017 /DEF=Rattus norvegicus RSD-7 mRNA, complete cds. /PROD=RSD-7 /FL=gb:AF315467.1 AF315467 AN1, ubiquitin-like, homolog (Xenopus laevis) Anubl1 286998 NM_173332 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388030_a_at AF312319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF312319.1 /DB_XREF=gi:16588456 /FEA=FLmRNA /CNT=2 /TID=Rn.30059.3 /TIER=FL /STK=1 /UG=Rn.30059 /LL=81657 /UG_GENE=Gabbr1 /DEF=Rattus norvegicus GABA B receptor 1g mRNA, complete cds. /PROD=GABA B receptor 1g /FL=gb:AF312319.1 AF312319 gamma-aminobutyric acid (GABA) B receptor 1 Gabbr1 81657 NM_031028 0001649 // osteoblast differentiation // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007194 // negative regulation of adenylate cyclase activity // inferred from direct assay /// 0007194 // negative regulation of adenylate cyclase activity // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0014048 // regulation of glutamate secretion // inferred from direct assay /// 0014053 // negative regulation of gamma-aminobutyric acid secretion // inferred from mutant phenotype /// 0030817 // regulation of cAMP biosynthetic process // inferred from direct assay /// 0032811 // negative regulation of epinephrine secretion // inferred from mutant phenotype /// 0033602 // negative regulation of dopamine secretion // inferred from direct assay /// 0035094 // response to nicotine // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0050805 // negative regulation of synaptic transmission // inferred from direct assay /// 0060124 // positive regulation of growth hormone secretion // inferred from mutant phenotype 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030673 // axolemma // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004965 // GABA-B receptor activity // inferred from direct assay /// 0004965 // GABA-B receptor activity // inferred from mutant phenotype /// 0004965 // GABA-B receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction 1388031_x_at AB039826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB039826.1 /DB_XREF=gi:8307691 /FEA=FLmRNA /CNT=2 /TID=Rn.53983.1 /TIER=FL /STK=1 /UG=Rn.53983 /DEF=Rattus norvegicus mRNA for alpha-2u globulin, complete cds, clone:PGCL5. /PROD=alpha-2u globulin /FL=gb:AB039827.1 gb:AB039826.1 AB039826 alpha-2u globulin PGCL5 /// major urinary protein 5 LOC259245 /// Mup5 259245 /// 298107 NM_147213 /// NM_203325 0006810 // transport // inferred from electronic annotation 0004866 // endopeptidase inhibitor activity // non-traceable author statement /// 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005550 // pheromone binding // inferred from electronic annotation 1388032_a_at D87927 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D87927.1 /DB_XREF=gi:9967140 /FEA=FLmRNA /CNT=1 /TID=Rn.10525.2 /TIER=FL /STK=1 /UG=Rn.10525 /LL=171551 /UG_GENE=Cinc2 /DEF=Rattus norvegicus mRNA for CINC-2 alpha, complete cds. /PROD=CINC-2 alpha /FL=gb:D87927.1 D87927 chemokine (C-X-C motif) ligand 3 Cxcl3 171551 NM_138522 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from mutant phenotype /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // inferred from direct assay /// 0030593 // neutrophil chemotaxis // not recorded /// 0030593 // neutrophil chemotaxis // non-traceable author statement /// 0030593 // neutrophil chemotaxis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008009 // chemokine activity // inferred from direct assay /// 0008009 // chemokine activity // not recorded /// 0008009 // chemokine activity // inferred from electronic annotation 1388033_at D21095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D21095.1 /DB_XREF=gi:517143 /FEA=FLmRNA /CNT=2 /TID=Rn.10525.1 /TIER=FL /STK=1 /UG=Rn.10525 /LL=171551 /UG_GENE=Cinc2 /DEF=Rat mRNA for CINC-2 beta, complete cds. /PROD=CINC-2 beta (cytokine-induced neutrophilchemoattractant-2 beta) /FL=gb:D21095.1 D21095 chemokine (C-X-C motif) ligand 3 Cxcl3 171551 NM_138522 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from mutant phenotype /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // inferred from direct assay /// 0030593 // neutrophil chemotaxis // not recorded /// 0030593 // neutrophil chemotaxis // non-traceable author statement /// 0030593 // neutrophil chemotaxis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008009 // chemokine activity // inferred from direct assay /// 0008009 // chemokine activity // not recorded /// 0008009 // chemokine activity // inferred from electronic annotation 1388034_at AB070355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB070355.1 /DB_XREF=gi:19911180 /GEN=KIF1Bp204 /FEA=FLmRNA /CNT=1 /TID=Affx.1.40 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus mRNA for kinesin-family protein 1Bp204, complete cds. /PROD=kinesin-family protein 1Bp204 /FL=gb:AB070355.1 AB070355 kinesin family member 1B /// phosphogluconate dehydrogenase Kif1b /// Pgd 117548 /// 362660 NM_057200 0005975 // carbohydrate metabolic process // inferred from direct assay /// 0006098 // pentose-phosphate shunt // inferred from direct assay /// 0006098 // pentose-phosphate shunt // inferred from sequence or structural similarity /// 0006200 // ATP catabolic process // not recorded /// 0006739 // NADP metabolic process // inferred from direct assay /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007018 // microtubule-based movement // not recorded /// 0007018 // microtubule-based movement // inferred from sequence or structural similarity /// 0007270 // nerve-nerve synaptic transmission // not recorded /// 0007270 // nerve-nerve synaptic transmission // inferred from sequence or structural similarity /// 0007270 // nerve-nerve synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0007274 // neuromuscular synaptic transmission // inferred from sequence or structural similarity /// 0007274 // neuromuscular synaptic transmission // inferred from electronic annotation /// 0008089 // anterograde axon cargo transport // not recorded /// 0008089 // anterograde axon cargo transport // inferred from sequence or structural similarity /// 0008089 // anterograde axon cargo transport // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0009051 // pentose-phosphate shunt, oxidative branch // inferred from mutant phenotype /// 0009051 // pentose-phosphate shunt, oxidative branch // not recorded /// 0019322 // pentose biosynthetic process // not recorded /// 0019521 // D-gluconate metabolic process // inferred from direct assay /// 0030705 // cytoskeleton-dependent intracellular transport // not recorded /// 0030705 // cytoskeleton-dependent intracellular transport // inferred from sequence or structural similarity /// 0030705 // cytoskeleton-dependent intracellular transport // inferred from electronic annotation /// 0047497 // mitochondrion transport along microtubule // inferred from electronic annotation /// 0047497 // mitochondrion transport along microtubule // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // not recorded /// 0005875 // microtubule associated complex // inferred from sequence or structural similarity /// 0005875 // microtubule associated complex // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // not recorded /// 0030659 // cytoplasmic vesicle membrane // inferred from sequence or structural similarity /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // not recorded /// 0003777 // microtubule motor activity // inferred from sequence or structural similarity /// 0004616 // phosphogluconate dehydrogenase (decarboxylating) activity // inferred from direct assay /// 0004616 // phosphogluconate dehydrogenase (decarboxylating) activity // not recorded /// 0004616 // phosphogluconate dehydrogenase (decarboxylating) activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0016887 // ATPase activity // inferred from sequence or structural similarity /// 0016887 // ATPase activity // inferred from electronic annotation /// 0031406 // carboxylic acid binding // inferred from direct assay /// 0050661 // NADP or NADPH binding // inferred from direct assay 1388035_a_at AF353637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF353637.1 /DB_XREF=gi:13774489 /FEA=FLmRNA /CNT=1 /TID=Rn.32074.2 /TIER=FL /STK=1 /UG=Rn.32074 /LL=25665 /UG_GENE=Scn5a /DEF=Rattus norvegicus sodium channel Nav1.5a mRNA, complete cds. /PROD=sodium channel Nav1.5a /FL=gb:AF353637.1 AF353637 sodium channel, voltage-gated, type V, alpha subunit Scn5a 25665 NM_001160162 /// NM_013125 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation 0001518 // voltage-gated sodium channel complex // inferred from electronic annotation /// 0001518 // voltage-gated sodium channel complex // traceable author statement /// 0005886 // plasma membrane // not recorded /// 0014704 // intercalated disc // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030315 // T-tubule // not recorded /// 0042383 // sarcolemma // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005248 // voltage-gated sodium channel activity // inferred from electronic annotation /// 0005248 // voltage-gated sodium channel activity // traceable author statement /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388036_a_at U83231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U83231.1 /DB_XREF=gi:2555012 /FEA=FLmRNA /CNT=1 /TID=Rn.58.2 /TIER=FL /STK=1 /UG=Rn.58 /LL=26955 /UG_GENE=AF-6 /DEF=Rattus norvegicus s-Afadin mRNA, complete cds. /PROD=s-Afadin /FL=gb:U83231.1 U83231 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 Mllt4 26955 NM_013217 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005912 // adherens junction // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0005913 // cell-cell adherens junction // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030054 // cell junction // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030274 // LIM domain binding // inferred from physical interaction /// 0050839 // cell adhesion molecule binding // not recorded 1388037_at J05087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J05087.1 /DB_XREF=gi:203050 /GEN=PMCA3 /FEA=FLmRNA /CNT=1 /TID=Affx.1.42 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rat calmodulin-sensitive plasma membrane Ca2+-transporting ATPase (PMCA3) mRNA, complete cds. /PROD=unknown protein /FL=gb:J05087.1 J05087 ATPase, Ca++ transporting, plasma membrane 3 Atp2b3 29599 NM_133288 0003407 // neural retina development // inferred from expression pattern /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015085 // calcium ion transmembrane transporter activity // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1388038_at AB038388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB038388.1 /DB_XREF=gi:12275311 /GEN=Atrn /FEA=FLmRNA /CNT=1 /TID=Rn.53846.2 /TIER=FL /STK=1 /UG=Rn.53846 /LL=83526 /DEF=Rattus norvegicus Atrn mRNA for attractin, complete cds. /PROD=attractin /FL=gb:AB038388.1 AB038388 attractin Atrn 83526 NM_031351 0006954 // inflammatory response // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0043473 // pigmentation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from electronic annotation 1388039_a_at AF283276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF283276.1 /DB_XREF=gi:14582573 /FEA=FLmRNA /CNT=1 /TID=Rn.30059.4 /TIER=FL /STK=1 /UG=Rn.30059 /LL=81657 /UG_GENE=Gabbr1 /DEF=Rattus norvegicus GABA type B receptor 1f mRNA, complete cds. /PROD=GABA type B receptor 1f /FL=gb:AF283276.1 AF283276 gamma-aminobutyric acid (GABA) B receptor 1 Gabbr1 81657 NM_031028 0001649 // osteoblast differentiation // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007194 // negative regulation of adenylate cyclase activity // inferred from direct assay /// 0007194 // negative regulation of adenylate cyclase activity // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0014048 // regulation of glutamate secretion // inferred from direct assay /// 0014053 // negative regulation of gamma-aminobutyric acid secretion // inferred from mutant phenotype /// 0030817 // regulation of cAMP biosynthetic process // inferred from direct assay /// 0032811 // negative regulation of epinephrine secretion // inferred from mutant phenotype /// 0033602 // negative regulation of dopamine secretion // inferred from direct assay /// 0035094 // response to nicotine // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0050805 // negative regulation of synaptic transmission // inferred from direct assay /// 0060124 // positive regulation of growth hormone secretion // inferred from mutant phenotype 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030673 // axolemma // inferred from direct assay /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004965 // GABA-B receptor activity // inferred from direct assay /// 0004965 // GABA-B receptor activity // inferred from mutant phenotype /// 0004965 // GABA-B receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction 1388040_a_at AF209114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF209114.1 /DB_XREF=gi:6636339 /FEA=FLmRNA /CNT=1 /TID=Rn.48756.2 /TIER=FL /STK=1 /UG=Rn.48756 /DEF=Rattus norvegicus myosin heavy chain Myr 8 mRNA, complete cds. /PROD=myosin heavy chain Myr 8 /FL=gb:AF209114.1 AF209114 myosin XVI Myo16 192253 NM_138893 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0021549 // cerebellum development // inferred from expression pattern /// 0045749 // negative regulation of S phase of mitotic cell cycle // inferred from direct assay 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016459 // myosin complex // inferred from direct assay /// 0016459 // myosin complex // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction /// 0051015 // actin filament binding // inferred from direct assay 1388041_s_at AY061639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY061639.1 /DB_XREF=gi:16903209 /FEA=FLmRNA /CNT=1 /TID=Rn.81075.1 /TIER=FL /STK=1 /UG=Rn.81075 /DEF=Rattus norvegicus neurofascin 155 kDa isoform mRNA, complete cds. /PROD=neurofascin 155 kDa isoform /FL=gb:AY061639.1 AY061639 neurofascin Nfasc 116690 NM_001160313 /// NM_001160314 /// NM_001160315 /// NM_053909 0007155 // cell adhesion // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007422 // peripheral nervous system development // inferred from expression pattern /// 0042552 // myelination // inferred from expression pattern /// 0050808 // synapse organization // inferred from electronic annotation /// 0050808 // synapse organization // not recorded 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0033268 // node of Ranvier // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388042_at AF061957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF061957.1 /DB_XREF=gi:3659689 /GEN=elk1 /FEA=FLmRNA /CNT=1 /TID=Rn.30029.1 /TIER=FL /STK=1 /UG=Rn.30029 /DEF=Rattus norvegicus potassium channel (elk1) mRNA, complete cds. /PROD=potassium channel /FL=gb:AF061957.1 AF061957 potassium voltage-gated channel, subfamily H (eag-related), member 8 Kcnh8 246325 NM_145095 0000160 // two-component signal transduction system (phosphorelay) // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000155 // two-component sensor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from mutant phenotype /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from mutant phenotype /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation 1388043_at J02649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J02649.1 /DB_XREF=gi:203036 /FEA=FLmRNA /CNT=1 /TID=Affx.1.45 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rat stomach (H+,K+)-ATPase mRNA, complete cds. /PROD=unknown protein /FL=gb:J02649.1 J02649 ATPase, H+/K+ exchanging, alpha polypeptide Atp4a 24216 NM_012509 0001696 // gastric acid secretion // traceable author statement /// 0006200 // ATP catabolic process // not recorded /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0010155 // regulation of proton transport // inferred from electronic annotation /// 0010155 // regulation of proton transport // not recorded /// 0015672 // monovalent inorganic cation transport // inferred from electronic annotation /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0045851 // pH reduction // inferred from electronic annotation /// 0045851 // pH reduction // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008900 // hydrogen:potassium-exchanging ATPase activity // not recorded /// 0008900 // hydrogen:potassium-exchanging ATPase activity // traceable author statement /// 0008900 // hydrogen:potassium-exchanging ATPase activity // inferred from electronic annotation /// 0015077 // monovalent inorganic cation transmembrane transporter activity // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1388044_at L27084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L27084.1 /DB_XREF=gi:436188 /FEA=FLmRNA /CNT=1 /TID=Rn.10919.2 /TIER=FL /STK=1 /UG=Rn.10919 /LL=24640 /UG_GENE=Pfkfb2 /DEF=Rat fructose-6-phosphate,2-kinase:fructose-2,6-bisphosphatase mRNA, complete cds. /PROD=fructose-6-phosphate,2-kinase:fructose-2,6-bisphosphatase /FL=gb:L27084.1 L27084 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 Pfkfb2 24640 NM_001033964 /// NM_001033965 /// NM_080477 0006000 // fructose metabolic process // inferred from electronic annotation /// 0006003 // fructose 2,6-bisphosphate metabolic process // traceable author statement /// 0006003 // fructose 2,6-bisphosphate metabolic process // inferred from electronic annotation /// 0006007 // glucose catabolic process // inferred from direct assay /// 0006089 // lactate metabolic process // inferred from direct assay /// 0006090 // pyruvate metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from direct assay /// 0032024 // positive regulation of insulin secretion // inferred from direct assay /// 0033133 // positive regulation of glucokinase activity // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003873 // 6-phosphofructo-2-kinase activity // traceable author statement /// 0003873 // 6-phosphofructo-2-kinase activity // inferred from electronic annotation /// 0004331 // fructose-2,6-bisphosphate 2-phosphatase activity // traceable author statement /// 0004331 // fructose-2,6-bisphosphate 2-phosphatase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019900 // kinase binding // inferred from physical interaction 1388045_a_at D83348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D83348.1 /DB_XREF=gi:1398905 /FEA=FLmRNA /CNT=1 /TID=Rn.11397.2 /TIER=FL /STK=1 /UG=Rn.11397 /LL=29182 /UG_GENE=Cdh22 /DEF=Rattus norvegicus mRNA for long type PB-cadherin, complete cds. /PROD=long type PB-cadherin /FL=gb:D83348.1 D83348 cadherin 22 Cdh22 29182 NM_019161 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0007420 // brain development // non-traceable author statement /// 0016339 // calcium-dependent cell-cell adhesion // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1388046_at AF268593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF268593.1 /DB_XREF=gi:8917586 /FEA=FLmRNA /CNT=1 /TID=Rn.54465.1 /TIER=FL /STK=1 /UG=Rn.54465 /DEF=Rattus norvegicus integrin beta 2 alpha subunit mRNA, complete cds. /PROD=integrin beta 2 alpha subunit /FL=gb:AF268593.1 AF268593 integrin, alpha M Itgam 25021 NM_012711 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0007159 // leukocyte cell-cell adhesion // inferred from electronic annotation /// 0007159 // leukocyte cell-cell adhesion // not recorded /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // not recorded /// 0045123 // cellular extravasation // inferred from electronic annotation /// 0045123 // cellular extravasation // not recorded /// 0050798 // activated T cell proliferation // inferred from electronic annotation /// 0050798 // activated T cell proliferation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0008305 // integrin complex // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0001846 // opsonin binding // inferred from electronic annotation /// 0001846 // opsonin binding // not recorded /// 0001948 // glycoprotein binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded /// 0043395 // heparan sulfate proteoglycan binding // inferred from electronic annotation /// 0043395 // heparan sulfate proteoglycan binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1388047_at AF016183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF016183.1 /DB_XREF=gi:2367614 /GEN=Go-VN6 /FEA=FLmRNA /CNT=1 /TID=Rn.10811.1 /TIER=FL /STK=1 /UG=Rn.10811 /DEF=Rattus norvegicus putative pheromone receptor (Go-VN6) mRNA, complete cds. /PROD=putative pheromone receptor /FL=gb:AF016183.1 AF016183 vomeronasal 2 receptor, pseudogene 45 Vom2r-ps45 286982 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1388048_a_at U96920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U96920.1 /DB_XREF=gi:2232032 /FEA=FLmRNA /CNT=1 /TID=Rn.10829.2 /TIER=FL /STK=1 /UG=Rn.10829 /LL=116699 /UG_GENE=Inpp4b /DEF=Rattus norvegicus inositol polyphosphate 4-phosphatase type II-alpha mRNA, complete cds. /PROD=inositol polyphosphate 4-phosphatase typeII-alpha /FL=gb:U96920.1 U96920 inositol polyphosphate-4-phosphatase, type II Inpp4b 116699 NM_053917 0016316 // phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity // inferred from direct assay /// 0016316 // phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0034597 // phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity // inferred from electronic annotation 1388049_a_at AF255612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF255612.1 /DB_XREF=gi:10443894 /FEA=FLmRNA /CNT=1 /TID=Rn.54455.2 /TIER=FL /STK=1 /UG=Rn.54455 /LL=65191 /UG_GENE=Gabre /DEF=Rattus norvegicus GABA-A receptor epsilon subunit mRNA, complete cds. /PROD=GABA-A receptor epsilon subunit /FL=gb:AF255612.1 AF255612 gamma-aminobutyric acid (GABA) A receptor, epsilon Gabre 65191 NM_023091 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // traceable author statement /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004890 // GABA-A receptor activity // inferred from direct assay /// 0004890 // GABA-A receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation 1388050_at AF016182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF016182.1 /DB_XREF=gi:2367612 /GEN=Go-VN5 /FEA=FLmRNA /CNT=1 /TID=Rn.10810.1 /TIER=FL /STK=1 /UG=Rn.10810 /DEF=Rattus norvegicus putative pheromone receptor (Go-VN5) mRNA, complete cds. /PROD=putative pheromone receptor /FL=gb:AF016182.1 AF016182 vomeronasal 2 receptor, 27 Vom2r27 286914 NM_173130 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1388051_at AF337809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF337809.1 /DB_XREF=gi:15077506 /FEA=FLmRNA /CNT=1 /TID=Rn.81026.1 /TIER=FL /STK=1 /UG=Rn.81026 /DEF=Rattus norvegicus down-regulated in adenoma protein mRNA, complete cds. /PROD=down-regulated in adenoma protein /FL=gb:AF337809.1 AF337809 solute carrier family 26, member 3 Slc26a3 114629 NM_053755 0006810 // transport // inferred from electronic annotation /// 0006820 // anion transport // not recorded /// 0006820 // anion transport // traceable author statement /// 0008272 // sulfate transport // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from expression pattern /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0031526 // brush border membrane // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0008271 // secondary active sulfate transmembrane transporter activity // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation /// 0015301 // anion:anion antiporter activity // inferred from direct assay /// 0015301 // anion:anion antiporter activity // not recorded 1388052_a_at AF091247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF091247.1 /DB_XREF=gi:3929230 /GEN=KCNQ3 /FEA=FLmRNA /CNT=1 /TID=Rn.30019.2 /TIER=FL /STK=1 /UG=Rn.30019 /LL=29682 /DEF=Rattus norvegicus potassium channel (KCNQ3) mRNA, complete cds. /PROD=potassium channel /FL=gb:AF091247.1 AF091247 potassium voltage-gated channel, KQT-like subfamily, member 3 Kcnq3 29682 NM_031597 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation 1388053_at AF177477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF177477.1 /DB_XREF=gi:7330737 /FEA=FLmRNA /CNT=1 /TID=Rn.12997.1 /TIER=FL /STK=1 /UG=Rn.12997 /DEF=Rattus norvegicus clone C42 CDK5 activator-binding protein mRNA, complete cds. /PROD=CDK5 activator-binding protein /FL=gb:AF177477.1 AF177477 CDK5 regulatory subunit associated protein 1 Cdk5rap1 252827 NM_145721 0000079 // regulation of cyclin-dependent protein kinase activity // inferred from direct assay /// 0006400 // tRNA modification // inferred from electronic annotation /// 0007420 // brain development // traceable author statement /// 0008283 // cell proliferation // non-traceable author statement /// 0009451 // RNA modification // inferred from electronic annotation /// 0045664 // regulation of neuron differentiation // traceable author statement /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // not recorded /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // inferred from sequence or structural similarity /// 0045859 // regulation of protein kinase activity // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0019887 // protein kinase regulator activity // traceable author statement /// 0019901 // protein kinase binding // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 1388054_a_at AF072892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF072892.1 /DB_XREF=gi:3309590 /FEA=FLmRNA /CNT=1 /TID=Rn.35666.1 /TIER=FL /STK=1 /UG=Rn.35666 /LL=114122 /UG_GENE=Cspg2 /DEF=Rattus norvegicus versican V3 isoform precursor, mRNA, complete cds. /PROD=versican V3 isoform precursor /FL=gb:AF072892.1 AF072892 versican Vcan 114122 NM_001170558 /// NM_001170559 /// NM_001170560 /// NM_053663 /// XM_001058357 /// XM_215451 0001657 // ureteric bud development // not recorded /// 0006928 // cellular component movement // traceable author statement /// 0007155 // cell adhesion // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0008347 // glial cell migration // inferred from electronic annotation /// 0008347 // glial cell migration // not recorded /// 0009611 // response to wounding // inferred from expression pattern /// 0031103 // axon regeneration // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // traceable author statement 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // traceable author statement /// 0005540 // hyaluronic acid binding // inferred from electronic annotation /// 0030169 // low-density lipoprotein binding // traceable author statement 1388055_at U39207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U39207.1 /DB_XREF=gi:1146437 /GEN=CYP4F5 /FEA=FLmRNA /CNT=1 /TID=Rn.10171.1 /TIER=FL /STK=1 /UG=Rn.10171 /DEF=Rattus norvegicus cytochrome P450 4F5 (CYP4F5) mRNA, complete cds. /PROD=cytochrome P450 4F5 /FL=gb:U39207.1 U39207 cytochrome P450, family 4, subfamily f, polypeptide 5 Cyp4f5 286905 NM_173124 0006691 // leukotriene metabolic process // inferred from mutant phenotype /// 0006954 // inflammatory response // traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1388056_at AF068268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF068268.1 /DB_XREF=gi:3192926 /FEA=FLmRNA /CNT=1 /TID=Rn.14530.1 /TIER=FL /STK=1 /UG=Rn.14530 /DEF=Rattus norvegicus 25 oligoadenylate synthetase-2 mRNA, complete cds. /PROD=25 oligoadenylate synthetase-2 /FL=gb:AF068268.1 AF068268 2-5 oligoadenylate synthetase 1B Oas1b 246268 NM_144752 0006955 // immune response // inferred from electronic annotation /// 0009615 // response to virus // not recorded /// 0009615 // response to virus // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1388057_a_at AB003594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB003594.1 /DB_XREF=gi:2766158 /FEA=FLmRNA /CNT=1 /TID=Rn.37481.3 /TIER=FL /STK=1 /UG=Rn.37481 /LL=65040 /UG_GENE=Dlgap1 /DEF=Rattus norvegicus mRNA for PSD-95 binding protein, complete cds. /PROD=PSD-95 binding protein /FL=gb:AB003594.1 AB003594 discs, large (Drosophila) homolog-associated protein 1 Dlgap1 65040 NM_022946 0007267 // cell-cell signaling // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from direct assay 1388058_at D49446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D49446.1 /DB_XREF=gi:1372987 /FEA=FLmRNA /CNT=1 /TID=Affx.1.51 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rat mRNA for TFIID subunit p80, complete cds. /PROD=TFIID subunit p80 /FL=gb:D49446.1 D49446 TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor Taf6 288533 NM_001044225 0006350 // transcription // inferred from electronic annotation /// 0006352 // transcription initiation // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // not recorded /// 0051090 // regulation of transcription factor activity // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005669 // transcription factor TFIID complex // inferred from electronic annotation /// 0005669 // transcription factor TFIID complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0033276 // transcription factor TFTC complex // inferred from electronic annotation /// 0033276 // transcription factor TFTC complex // not recorded /// 0071339 // MLL1 complex // not recorded /// 0071339 // MLL1 complex // inferred from sequence or structural similarity /// 0071339 // MLL1 complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016986 // transcription initiation factor activity // inferred from electronic annotation /// 0016986 // transcription initiation factor activity // not recorded 1388059_a_at AF029757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF029757.1 /DB_XREF=gi:2921271 /GEN=Nramp2 /FEA=FLmRNA /CNT=1 /TID=Rn.11418.2 /TIER=FL /STK=1 /UG=Rn.11418 /LL=25715 /DEF=Rattus norvegicus natural resistance associated macrophage protein-2 (Nramp2) mRNA, C-terminal exon alternative splice variant, complete cds. /PROD=natural resistance associated macrophageprotein-2 /FL=gb:AF029757.1 AF029757 solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2 Slc11a2 25715 NM_013173 0000041 // transition metal ion transport // inferred from direct assay /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0003032 // detection of oxygen // inferred from electronic annotation /// 0003032 // detection of oxygen // not recorded /// 0006778 // porphyrin metabolic process // not recorded /// 0006778 // porphyrin metabolic process // inferred from electronic annotation /// 0006779 // porphyrin biosynthetic process // not recorded /// 0006779 // porphyrin biosynthetic process // inferred from electronic annotation /// 0006783 // heme biosynthetic process // inferred from electronic annotation /// 0006783 // heme biosynthetic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006824 // cobalt ion transport // not recorded /// 0006824 // cobalt ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // not recorded /// 0006826 // iron ion transport // not recorded /// 0006826 // iron ion transport // inferred from electronic annotation /// 0006828 // manganese ion transport // inferred from electronic annotation /// 0006828 // manganese ion transport // not recorded /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0007611 // learning or memory // inferred from electronic annotation /// 0007611 // learning or memory // not recorded /// 0010039 // response to iron ion // inferred from expression pattern /// 0010039 // response to iron ion // not recorded /// 0010039 // response to iron ion // inferred from electronic annotation /// 0010042 // response to manganese ion // inferred from mutant phenotype /// 0010288 // response to lead ion // inferred from expression pattern /// 0015675 // nickel ion transport // inferred from electronic annotation /// 0015675 // nickel ion transport // not recorded /// 0015676 // vanadium ion transport // not recorded /// 0015676 // vanadium ion transport // inferred from electronic annotation /// 0015684 // ferrous iron transport // inferred from mutant phenotype /// 0015684 // ferrous iron transport // not recorded /// 0015684 // ferrous iron transport // inferred from electronic annotation /// 0015692 // lead ion transport // not recorded /// 0015692 // lead ion transport // inferred from electronic annotation /// 0015992 // proton transport // not recorded /// 0015992 // proton transport // inferred from electronic annotation /// 0034599 // cellular response to oxidative stress // inferred from electronic annotation /// 0034599 // cellular response to oxidative stress // not recorded /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0048813 // dendrite morphogenesis // inferred from electronic annotation /// 0048813 // dendrite morphogenesis // not recorded /// 0048821 // erythrocyte development // inferred from electronic annotation /// 0048821 // erythrocyte development // not recorded /// 0060586 // multicellular organismal iron ion homeostasis // inferred from electronic annotation /// 0060586 // multicellular organismal iron ion homeostasis // not recorded /// 0070574 // cadmium ion transmembrane transport // not recorded /// 0070574 // cadmium ion transmembrane transport // inferred from electronic annotation /// 0070627 // ferrous iron import // inferred from electronic annotation /// 0070627 // ferrous iron import // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005765 // lysosomal membrane // not recorded /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005770 // late endosome // not recorded /// 0005770 // late endosome // inferred from electronic annotation /// 0005773 // vacuole // inferred from electronic annotation /// 0005773 // vacuole // not recorded /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005903 // brush border // inferred from electronic annotation /// 0005903 // brush border // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0012505 // endomembrane system // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0031902 // late endosome membrane // inferred from direct assay /// 0031902 // late endosome membrane // not recorded /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from direct assay /// 0045177 // apical part of cell // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045178 // basal part of cell // inferred from electronic annotation /// 0045178 // basal part of cell // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0055037 // recycling endosome // inferred from electronic annotation /// 0055037 // recycling endosome // not recorded /// 0070826 // paraferritin complex // inferred from electronic annotation /// 0070826 // paraferritin complex // not recorded 0005215 // transporter activity // inferred from electronic annotation /// 0005375 // copper ion transmembrane transporter activity // inferred from direct assay /// 0005375 // copper ion transmembrane transporter activity // not recorded /// 0005375 // copper ion transmembrane transporter activity // inferred from electronic annotation /// 0005381 // iron ion transmembrane transporter activity // inferred from direct assay /// 0005381 // iron ion transmembrane transporter activity // not recorded /// 0005381 // iron ion transmembrane transporter activity // inferred from electronic annotation /// 0005384 // manganese ion transmembrane transporter activity // inferred from direct assay /// 0005384 // manganese ion transmembrane transporter activity // not recorded /// 0005384 // manganese ion transmembrane transporter activity // inferred from electronic annotation /// 0005385 // zinc ion transmembrane transporter activity // inferred from electronic annotation /// 0005385 // zinc ion transmembrane transporter activity // not recorded /// 0005506 // iron ion binding // inferred from direct assay /// 0005507 // copper ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from direct assay /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0015078 // hydrogen ion transmembrane transporter activity // not recorded /// 0015082 // di-, tri-valent inorganic cation transmembrane transporter activity // not recorded /// 0015082 // di-, tri-valent inorganic cation transmembrane transporter activity // inferred from electronic annotation /// 0015085 // calcium ion transmembrane transporter activity // not recorded /// 0015086 // cadmium ion transmembrane transporter activity // inferred from direct assay /// 0015086 // cadmium ion transmembrane transporter activity // not recorded /// 0015086 // cadmium ion transmembrane transporter activity // inferred from electronic annotation /// 0015087 // cobalt ion transmembrane transporter activity // inferred from direct assay /// 0015087 // cobalt ion transmembrane transporter activity // not recorded /// 0015087 // cobalt ion transmembrane transporter activity // inferred from electronic annotation /// 0015093 // ferrous iron transmembrane transporter activity // inferred from mutant phenotype /// 0015093 // ferrous iron transmembrane transporter activity // not recorded /// 0015093 // ferrous iron transmembrane transporter activity // inferred from electronic annotation /// 0015094 // lead ion transmembrane transporter activity // inferred from direct assay /// 0015094 // lead ion transmembrane transporter activity // not recorded /// 0015094 // lead ion transmembrane transporter activity // inferred from electronic annotation /// 0015099 // nickel ion transmembrane transporter activity // inferred from direct assay /// 0015099 // nickel ion transmembrane transporter activity // not recorded /// 0015099 // nickel ion transmembrane transporter activity // inferred from electronic annotation /// 0015100 // vanadium ion transmembrane transporter activity // inferred from electronic annotation /// 0015100 // vanadium ion transmembrane transporter activity // not recorded /// 0015295 // solute:hydrogen symporter activity // inferred from electronic annotation /// 0015295 // solute:hydrogen symporter activity // not recorded /// 0016151 // nickel ion binding // inferred from direct assay /// 0030145 // manganese ion binding // inferred from direct assay /// 0046870 // cadmium ion binding // inferred from direct assay /// 0050897 // cobalt ion binding // inferred from direct assay /// 0070835 // chromium ion transmembrane transporter activity // not recorded 1388060_at U71294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U71294.1 /DB_XREF=gi:1772657 /GEN=Sytr1 /FEA=FLmRNA /CNT=1 /TID=Rn.10682.1 /TIER=FL /STK=1 /UG=Rn.10682 /DEF=Rattus norvegicus Srg1 (Sytr1) mRNA, complete cds. /PROD=Srg1 /FL=gb:U71294.1 U71294 synaptotagmin XII Syt12 191595 NM_138835 0046928 // regulation of neurotransmitter secretion // non-traceable author statement 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 1388061_a_at U21955 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U21955.1 /DB_XREF=gi:755569 /FEA=FLmRNA /CNT=1 /TID=Rn.10181.2 /TIER=FL /STK=1 /UG=Rn.10181 /LL=171287 /UG_GENE=Epha7 /DEF=Rattus norvegicus tyrosine kinase receptor Ehk-3, truncated form, mRNA, complete cds. /PROD=Ehk-3, truncated form /FL=gb:U21955.1 U21955 Eph receptor A7 Epha7 171287 NM_134331 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from direct assay /// 0031290 // retinal ganglion cell axon guidance // inferred from electronic annotation /// 0031290 // retinal ganglion cell axon guidance // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043525 // positive regulation of neuron apoptosis // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptosis // not recorded /// 0048755 // branching morphogenesis of a nerve // inferred from electronic annotation /// 0048755 // branching morphogenesis of a nerve // not recorded /// 0050919 // negative chemotaxis // not recorded 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0031594 // neuromuscular junction // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005003 // ephrin receptor activity // non-traceable author statement /// 0005003 // ephrin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0045499 // chemorepellent activity // inferred from electronic annotation /// 0045499 // chemorepellent activity // not recorded /// 0046875 // ephrin receptor binding // inferred from direct assay 1388062_at AF078798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF078798.2 /DB_XREF=gi:17388920 /FEA=FLmRNA /CNT=1 /TID=Rn.42898.1 /TIER=FL /STK=1 /UG=Rn.42898 /DEF=Rattus norvegicus extracellular signal-regulated kinase 7 mRNA, complete cds. /PROD=extracellular signal-regulated kinase 7 /FL=gb:AF078798.2 AF078798 mitogen-activated protein kinase 15 Mapk15 286997 NM_173331 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0008156 // negative regulation of DNA replication // inferred from mutant phenotype /// 0031398 // positive regulation of protein ubiquitination // inferred from mutant phenotype /// 0032355 // response to estradiol stimulus // inferred from mutant phenotype /// 0045732 // positive regulation of protein catabolic process // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // not recorded /// 0046777 // protein autophosphorylation // inferred from sequence or structural similarity /// 0046777 // protein autophosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004707 // MAP kinase activity // not recorded /// 0004707 // MAP kinase activity // inferred from sequence or structural similarity /// 0004707 // MAP kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from mutant phenotype 1388063_a_at AB040532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB040532.1 /DB_XREF=gi:8307719 /GEN=RH2K /FEA=FLmRNA /CNT=1 /TID=Rn.10919.5 /TIER=FL /STK=1 /UG=Rn.10919 /LL=24640 /DEF=Rattus norvegicus mRNA for RH2K3, complete cds. /PROD=RH2K3 /FL=gb:AB040532.1 AB040532 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 Pfkfb2 24640 NM_001033964 /// NM_001033965 /// NM_080477 0006000 // fructose metabolic process // inferred from electronic annotation /// 0006003 // fructose 2,6-bisphosphate metabolic process // traceable author statement /// 0006003 // fructose 2,6-bisphosphate metabolic process // inferred from electronic annotation /// 0006007 // glucose catabolic process // inferred from direct assay /// 0006089 // lactate metabolic process // inferred from direct assay /// 0006090 // pyruvate metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from direct assay /// 0032024 // positive regulation of insulin secretion // inferred from direct assay /// 0033133 // positive regulation of glucokinase activity // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003873 // 6-phosphofructo-2-kinase activity // traceable author statement /// 0003873 // 6-phosphofructo-2-kinase activity // inferred from electronic annotation /// 0004331 // fructose-2,6-bisphosphate 2-phosphatase activity // traceable author statement /// 0004331 // fructose-2,6-bisphosphate 2-phosphatase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019900 // kinase binding // inferred from physical interaction 1388064_a_at AF265360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF265360.1 /DB_XREF=gi:8118688 /FEA=FLmRNA /CNT=1 /TID=Rn.34134.2 /TIER=FL /STK=1 /UG=Rn.34134 /LL=29483 /UG_GENE=Slc1a3 /DEF=Rattus norvegicus GLAST-1a mRNA, alternatively spliced, complete cds. /PROD=GLAST-1a /FL=gb:AF265360.1 AF265360 solute carrier family 1 (glial high affinity glutamate transporter), member 3 Slc1a3 29483 NM_019225 0003333 // amino acid transmembrane transport // not recorded /// 0006536 // glutamate metabolic process // not recorded /// 0006536 // glutamate metabolic process // inferred from electronic annotation /// 0006537 // glutamate biosynthetic process // inferred from electronic annotation /// 0006537 // glutamate biosynthetic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006835 // dicarboxylic acid transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // traceable author statement /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0009416 // response to light stimulus // inferred from electronic annotation /// 0009416 // response to light stimulus // not recorded /// 0009449 // gamma-aminobutyric acid biosynthetic process // inferred from electronic annotation /// 0009449 // gamma-aminobutyric acid biosynthetic process // not recorded /// 0009611 // response to wounding // inferred from electronic annotation /// 0009611 // response to wounding // not recorded /// 0010035 // response to inorganic substance // inferred from direct assay /// 0015807 // L-amino acid transport // not recorded /// 0015813 // L-glutamate transport // inferred from direct assay /// 0015813 // L-glutamate transport // inferred from mutant phenotype /// 0015813 // L-glutamate transport // not recorded /// 0015813 // L-glutamate transport // inferred from electronic annotation /// 0021545 // cranial nerve development // inferred from electronic annotation /// 0021545 // cranial nerve development // not recorded /// 0031223 // auditory behavior // inferred from electronic annotation /// 0031223 // auditory behavior // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0043490 // malate-aspartate shuttle // inferred from direct assay /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0046677 // response to antibiotic // not recorded /// 0048667 // cell morphogenesis involved in neuron differentiation // inferred from electronic annotation /// 0048667 // cell morphogenesis involved in neuron differentiation // not recorded /// 0050806 // positive regulation of synaptic transmission // inferred from electronic annotation /// 0050806 // positive regulation of synaptic transmission // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0051938 // L-glutamate import // inferred from electronic annotation /// 0051938 // L-glutamate import // not recorded /// 0070779 // D-aspartate import // inferred from electronic annotation /// 0070779 // D-aspartate import // not recorded /// 0071436 // sodium ion export // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0042995 // cell projection // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043197 // dendritic spine // inferred from direct assay /// 0043205 // fibril // inferred from electronic annotation /// 0043205 // fibril // not recorded /// 0045202 // synapse // inferred from direct assay 0005313 // L-glutamate transmembrane transporter activity // inferred from direct assay /// 0005313 // L-glutamate transmembrane transporter activity // traceable author statement /// 0005314 // high-affinity glutamate transmembrane transporter activity // inferred from mutant phenotype /// 0005314 // high-affinity glutamate transmembrane transporter activity // not recorded /// 0005314 // high-affinity glutamate transmembrane transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015293 // symporter activity // inferred from electronic annotation /// 0016595 // glutamate binding // inferred from electronic annotation /// 0016595 // glutamate binding // not recorded /// 0016597 // amino acid binding // not recorded /// 0016597 // amino acid binding // inferred from electronic annotation /// 0017153 // sodium:dicarboxylate symporter activity // inferred from electronic annotation 1388065_at M90661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M90661.1 /DB_XREF=gi:204977 /FEA=FLmRNA /CNT=1 /TID=Affx.1.54 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus insulin receptor-related receptor-alpha subunit mRNA, complete cds. /PROD=insulin receptor-related receptor-alpha subunit /FL=gb:M90661.1 M90661 insulin receptor-related receptor Insrr 60663 NM_022212 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0030238 // male sex determination // not recorded /// 0030238 // male sex determination // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388066_a_at AF040750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF040750.1 /DB_XREF=gi:3005013 /GEN=GRK6 /FEA=FLmRNA /CNT=1 /TID=Rn.10633.2 /TIER=FL /STK=1 /UG=Rn.10633 /LL=59076 /DEF=Rattus norvegicus G protein-coupled receptor kinase 6, splice variant C (GRK6) mRNA, complete cds. /PROD=G protein-coupled receptor kinase 6, splicevariant C /FL=gb:AF040750.1 AF040750 G protein-coupled receptor kinase 6 Grk6 59076 NM_001112712 /// NM_001112713 /// NM_031657 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004703 // G-protein coupled receptor kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1388067_a_at AF205779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF205779.1 /DB_XREF=gi:7643904 /GEN=GMEB-2 /FEA=FLmRNA /CNT=1 /TID=Rn.8576.3 /TIER=FL /STK=1 /UG=Rn.8576 /LL=83635 /DEF=Rattus norvegicus GMEB-2a (GMEB-2) mRNA, complete cds. /PROD=GMEB-2a /FL=gb:AF205779.1 AF205779 glucocorticoid modulatory element binding protein 2 Gmeb2 83635 NM_031803 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388068_at AF166267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF166267.1 /DB_XREF=gi:10281105 /FEA=FLmRNA /CNT=1 /TID=Rn.64504.1 /TIER=FL /STK=1 /UG=Rn.64504 /LL=171549 /UG_GENE=Klct /DEF=Rattus norvegicus kinesin light chain KLCt mRNA, complete cds. /PROD=kinesin light chain KLCt /FL=gb:AF166267.1 AF166267 kinesin light chain 3 Klc3 171549 NM_138520 0008152 // metabolic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005871 // kinesin complex // inferred from electronic annotation /// 0005871 // kinesin complex // traceable author statement /// 0005874 // microtubule // inferred from electronic annotation /// 0009434 // microtubule-based flagellum // inferred from electronic annotation /// 0009434 // microtubule-based flagellum // not recorded /// 0035253 // ciliary rootlet // inferred from electronic annotation /// 0035253 // ciliary rootlet // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0008808 // cardiolipin synthase activity // inferred from electronic annotation /// 0008808 // cardiolipin synthase activity // not recorded /// 0019894 // kinesin binding // inferred from electronic annotation /// 0019894 // kinesin binding // not recorded 1388069_at U56936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U56936.1 /DB_XREF=gi:1354767 /GEN=NKR-P1B /FEA=FLmRNA /CNT=1 /TID=Rn.10493.1 /TIER=FL /STK=1 /UG=Rn.10493 /DEF=Rattus norvegicus NK lymphocyte receptor (NKR-P1B) mRNA, complete cds. /PROD=NKR-P1B /FL=gb:U56936.1 U56936 killer cell lectin-like receptor subfamily B member 1B Klrb1b 25192 NM_173292 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0045233 // natural killer cell receptor activity // non-traceable author statement 1388070_a_at AF092523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF092523.1 /DB_XREF=gi:3661607 /FEA=FLmRNA /CNT=1 /TID=Rn.30009.2 /TIER=FL /STK=1 /UG=Rn.30009 /LL=114124 /UG_GENE=Akap1 /DEF=Rattus norvegicus A-kinase anchor protein 84 mRNA, complete cds. /PROD=A-kinase anchor protein 84 /FL=gb:AF092523.1 AF092523 A kinase (PRKA) anchor protein 1 Akap1 114124 NM_053665 0010614 // negative regulation of cardiac muscle hypertrophy // inferred from mutant phenotype /// 0010738 // regulation of protein kinase A signaling cascade // inferred by curator /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0035308 // negative regulation of protein dephosphorylation // inferred from mutant phenotype /// 0051534 // negative regulation of NFAT protein import into nucleus // inferred from mutant phenotype /// 0070887 // cellular response to chemical stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005811 // lipid particle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030061 // mitochondrial crista // inferred from direct assay /// 0031594 // neuromuscular junction // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from direct assay /// 0019903 // protein phosphatase binding // inferred from direct assay /// 0019904 // protein domain specific binding // inferred from mutant phenotype /// 0030346 // protein phosphatase 2B binding // inferred from direct assay /// 0032947 // protein complex scaffold // inferred from direct assay /// 0034237 // protein kinase A regulatory subunit binding // inferred from direct assay /// 0048487 // beta-tubulin binding // inferred from direct assay 1388071_x_at M24024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M24024.1 /DB_XREF=gi:205444 /FEA=mRNA /CNT=1 /TID=Rn.39743.15 /TIER=ConsEnd /STK=0 /UG=Rn.39743 /LL=24737 /UG_GENE=RT1Aw2 /UG_TITLE=RT1 class Ib gene /DEF=Rat MHC class I RT1 (RT21) mRNA (u haplotype), 3 end. M24024 RT1 class Ib, locus EC2 RT1-EC2 24737 NM_012645 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from direct assay /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0002517 // T cell tolerance induction // inferred from mutant phenotype /// 0002657 // positive regulation of tolerance induction to nonself antigen // inferred from mutant phenotype /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0045953 // negative regulation of natural killer cell mediated cytotoxicity // inferred from mutant phenotype 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0030881 // beta-2-microglobulin binding // inferred from physical interaction /// 0042277 // peptide binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1388072_at AB010154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB010154.1 /DB_XREF=gi:4115428 /GEN=sbk /FEA=FLmRNA /CNT=1 /TID=Rn.42909.1 /TIER=FL /STK=1 /UG=Rn.42909 /DEF=Rattus norvegicus sbk mRNA for serinethreonine protein kinase with SH3 ligand, expressed in hippocampus, complete cds. /PROD=serinethreonine protein kinase /FL=gb:AB010154.1 AB010154 SH3-binding domain kinase 1 Sbk1 113907 NM_147135 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0018107 // peptidyl-threonine phosphorylation // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1388073_a_at AF000901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF000901.1 /DB_XREF=gi:3941278 /GEN=p58p45 /FEA=FLmRNA /CNT=1 /TID=Rn.11099.3 /TIER=FL /STK=1 /UG=Rn.11099 /DEF=Rattus norvegicus p23 (p58p45) mRNA, alternatively spliced, complete cds. /PROD=p23 /FL=gb:AF000901.1 AF000901 nucleoporin like 1 Nupl1 245922 NM_139091 0006810 // transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005643 // nuclear pore // inferred from direct assay /// 0005643 // nuclear pore // non-traceable author statement /// 0005643 // nuclear pore // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0005487 // nucleocytoplasmic transporter activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1388074_at M63665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M63665.1 /DB_XREF=gi:205052 /FEA=FLmRNA /CNT=1 /TID=Rn.9887.1 /TIER=FL /STK=1 /UG=Rn.9887 /DEF=Rat cytokeratin 21 mRNA, complete cds. /PROD=keratin /FL=gb:M63665.1 M63665 keratin 20 Krt20 286912 NM_173128 0006915 // apoptosis // inferred from electronic annotation /// 0033554 // cellular response to stress // not recorded /// 0033554 // cellular response to stress // inferred from sequence or structural similarity /// 0045109 // intermediate filament organization // not recorded /// 0045109 // intermediate filament organization // inferred from sequence or structural similarity /// 0050708 // regulation of protein secretion // not recorded /// 0050708 // regulation of protein secretion // inferred from sequence or structural similarity 0005737 // cytoplasm // not recorded /// 0005882 // intermediate filament // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388075_at U49694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U49694.1 /DB_XREF=gi:2130522 /FEA=FLmRNA /CNT=1 /TID=Rn.10283.1 /TIER=FL /STK=1 /UG=Rn.10283 /DEF=Rattus norvegicus brain cytosolic acyl coenzyme A thioester hydrolase mRNA, complete cds. /PROD=cytosolic acyl coenzyme A thioester hydrolase /FL=gb:U49694.1 U49694 acyl-CoA thioesterase 7 Acot7 26759 NM_001146061 /// NM_013214 0009062 // fatty acid catabolic process // inferred from electronic annotation /// 0009062 // fatty acid catabolic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0016290 // palmitoyl-CoA hydrolase activity // inferred from electronic annotation /// 0016290 // palmitoyl-CoA hydrolase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0047617 // acyl-CoA hydrolase activity // inferred from direct assay 1388076_at AF388527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF388527.1 /DB_XREF=gi:18041976 /FEA=FLmRNA /CNT=1 /TID=Rn.7674.1 /TIER=FL /STK=1 /UG=Rn.7674 /DEF=Rattus norvegicus hypothetical RNA binding protein RDA288 mRNA, complete cds. /PROD=hypothetical RNA binding protein RDA288 /FL=gb:AF388527.1 AF388527 Serpine1 mRNA binding protein 1 Serbp1 246303 NM_145086 0045767 // regulation of anti-apoptosis // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // not recorded /// 0003730 // mRNA 3'-UTR binding // inferred from sequence or structural similarity /// 0003730 // mRNA 3'-UTR binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388077_a_at AF084975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF084975.1 /DB_XREF=gi:5712196 /FEA=FLmRNA /CNT=1 /TID=Rn.10388.2 /TIER=FL /STK=1 /UG=Rn.10388 /LL=81739 /UG_GENE=P2rx3 /DEF=Rattus norvegicus P2X3b receptor mRNA, alternatively spliced, complete cds. /PROD=P2X3b receptor /FL=gb:AF084975.1 AF084975 purinergic receptor P2X, ligand-gated ion channel, 3 P2rx3 81739 NM_031075 0001666 // response to hypoxia // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // inferred from electronic annotation /// 0009266 // response to temperature stimulus // inferred from electronic annotation /// 0009408 // response to heat // inferred from electronic annotation /// 0009409 // response to cold // inferred from electronic annotation /// 0009743 // response to carbohydrate stimulus // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from electronic annotation /// 0014832 // urinary bladder smooth muscle contraction // inferred from electronic annotation /// 0019228 // regulation of action potential in neuron // inferred from direct assay /// 0030432 // peristalsis // inferred from electronic annotation /// 0033198 // response to ATP // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation /// 0048266 // behavioral response to pain // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from direct assay 0005624 // membrane fraction // inferred from direct assay /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030424 // axon // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043005 // neuron projection // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0044424 // intracellular part // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0004931 // extracellular ATP-gated cation channel activity // inferred from direct assay /// 0004931 // extracellular ATP-gated cation channel activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation 1388078_a_at AB049451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB049451.1 /DB_XREF=gi:13486623 /GEN=ASIC-beta2 /FEA=FLmRNA /CNT=1 /TID=Rn.37385.2 /TIER=FL /STK=1 /UG=Rn.37385 /LL=79123 /DEF=Rattus norvegicus mRNA for proton-gated cation channel subunit ASIC-beta2, complete cds. /PROD=proton-gated cation channel subunit ASIC-beta2 /FL=gb:AB049451.1 AB049451 amiloride-sensitive cation channel 2, neuronal Accn2 79123 NM_024154 0001101 // response to acid // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0007613 // memory // not recorded /// 0008306 // associative learning // not recorded /// 0019233 // sensory perception of pain // non-traceable author statement /// 0034220 // ion transmembrane transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // not recorded 0005216 // ion channel activity // inferred from direct assay /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // not recorded /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015280 // ligand-gated sodium channel activity // inferred from electronic annotation 1388079_at AF361346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF361346.1 /DB_XREF=gi:17974525 /GEN=Cacng8 /FEA=FLmRNA /CNT=1 /TID=Rn.81217.1 /TIER=FL /STK=1 /UG=Rn.81217 /DEF=Rattus norvegicus voltage-dependent calcium channel gamma-8 subunit (Cacng8) mRNA, complete cds. /PROD=voltage-dependent calcium channel gamma-8subunit /FL=gb:AF361346.1 AF361346 calcium channel, voltage-dependent, gamma subunit 8 Cacng8 140729 NM_080696 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation 1388080_a_at AY009371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY009371.1 /DB_XREF=gi:12831432 /FEA=FLmRNA /CNT=1 /TID=Rn.7617.2 /TIER=FL /STK=1 /UG=Rn.7617 /LL=85268 /UG_GENE=Hrh3 /DEF=Rattus norvegicus histamine H3 receptor H3S isoform mRNA, complete cds. /PROD=histamine H3 receptor H3S isoform /FL=gb:AY009371.1 AY009371 histamine receptor H3 Hrh3 85268 NM_053506 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007194 // negative regulation of adenylate cyclase activity // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0007420 // brain development // inferred from expression pattern /// 0007612 // learning // inferred from mutant phenotype /// 0007613 // memory // inferred from mutant phenotype /// 0014050 // negative regulation of glutamate secretion // inferred from mutant phenotype /// 0014053 // negative regulation of gamma-aminobutyric acid secretion // inferred from mutant phenotype /// 0014061 // regulation of norepinephrine secretion // inferred from mutant phenotype /// 0014063 // negative regulation of serotonin secretion // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from mutant phenotype /// 0042755 // eating behavior // inferred from mutant phenotype /// 0042756 // drinking behavior // inferred from mutant phenotype /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0050679 // positive regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0050890 // cognition // inferred from mutant phenotype 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0043209 // myelin sheath // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004969 // histamine receptor activity // inferred from direct assay /// 0004969 // histamine receptor activity // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay 1388081_at D12820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D12820.1 /DB_XREF=gi:393324 /GEN=GUST27 /FEA=FLmRNA /CNT=1 /TID=Affx.1.59 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rat mRNA for GUST27 protein, complete cds. /PROD=GUST27 protein /FL=gb:D12820.1 D12820 olfactory receptor 1867 Olr1867 100036582 NM_001101022 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from reviewed computational analysis /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050911 // detection of chemical stimulus involved in sensory perception of smell // inferred from reviewed computational analysis 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from reviewed computational analysis 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from reviewed computational analysis 1388082_at U23438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U23438.1 /DB_XREF=gi:1263176 /GEN=MKP-2 /FEA=FLmRNA /CNT=1 /TID=Rn.44407.1 /TIER=FL /STK=1 /UG=Rn.44407 /LL=60587 /DEF=Rattus norvegicus MAP kinase phosphatase (MKP-2) mRNA, complete cds. /PROD=MAP kinase phosphatase /FL=gb:U23438.1 U23438 dual specificity phosphatase 4 Dusp4 60587 NM_022199 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from expression pattern /// 0016311 // dephosphorylation // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0008330 // protein tyrosine/threonine phosphatase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // inferred from direct assay /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation 1388083_a_at AY008275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY008275.1 /DB_XREF=gi:13569832 /FEA=FLmRNA /CNT=1 /TID=Rn.32199.2 /TIER=FL /STK=1 /UG=Rn.32199 /LL=58918 /UG_GENE=Casp9 /DEF=Rattus norvegicus caspase-9 CTD isoform mRNA, complete cds. /PROD=caspase-9 CTD isoform /FL=gb:AY008275.1 AY008275 caspase 9, apoptosis-related cysteine peptidase Casp9 58918 NM_031632 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from mutant phenotype /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // traceable author statement /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from mutant phenotype /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0009411 // response to UV // inferred from electronic annotation /// 0009411 // response to UV // not recorded /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0032025 // response to cobalt ion // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0034349 // glial cell apoptosis // inferred from expression pattern /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043525 // positive regulation of neuron apoptosis // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptosis // not recorded /// 0046677 // response to antibiotic // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008234 // cysteine-type peptidase activity // inferred from direct assay /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay 1388084_at U56822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U56822.1 /DB_XREF=gi:1354755 /FEA=FLmRNA /CNT=1 /TID=Rn.10564.1 /TIER=FL /STK=1 /UG=Rn.10564 /DEF=Rattus norvegicus Ly-49.12 antigen mRNA, complete cds. /PROD=Ly-49.12 antigen /FL=gb:U56822.1 U56822 killer cell lectin-like receptor subfamily A, member 22 Klra22 24933 NM_173291 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0045233 // natural killer cell receptor activity // traceable author statement 1388085_at M76733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M76733.1 /DB_XREF=gi:206820 /GEN=RY2D1 /FEA=FLmRNA /CNT=1 /TID=Rn.9852.1 /TIER=FL /STK=1 /UG=Rn.9852 /DEF=Rat odorant-metabolizing protein (RY2D1) mRNA, complete cds. /PROD=odorant-metabolizing protein /FL=gb:M76733.1 M76733 glutathione peroxidase 6 Gpx6 259233 NM_147165 0006979 // response to oxidative stress // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0004601 // peroxidase activity // inferred from electronic annotation /// 0004602 // glutathione peroxidase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1388086_a_at AF037203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF037203.1 /DB_XREF=gi:2746330 /FEA=FLmRNA /CNT=1 /TID=Rn.10879.2 /TIER=FL /STK=1 /UG=Rn.10879 /LL=83618 /UG_GENE=Rest /DEF=Rattus norvegicus zinc finger transcription factor REST protein mRNA, alternatively spliced product, complete cds. /PROD=zinc finger transcription factor REST protein /FL=gb:AF037203.1 AF037203 RE1-silencing transcription factor Rest 83618 NM_031788 0000122 // negative regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0006350 // transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from mutant phenotype /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation 0000785 // chromatin // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0043234 // protein complex // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0032403 // protein complex binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1388087_at U36897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U36897.1 /DB_XREF=gi:1055251 /FEA=FLmRNA /CNT=1 /TID=Rn.10143.1 /TIER=FL /STK=1 /UG=Rn.10143 /DEF=Rattus norvegicus putative pheromone receptor VN5, complete cds. /PROD=pheromone receptor VN5 /FL=gb:U36897.1 U36897 vomeronasal 1 receptor, 97 Vom1r97 286956 NM_173297 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0019236 // response to pheromone // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0016503 // pheromone receptor activity // inferred from electronic annotation 1388088_a_at AB035650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB035650.1 /DB_XREF=gi:11994807 /GEN=usf2 /FEA=FLmRNA /CNT=1 /TID=Rn.44637.2 /TIER=FL /STK=1 /UG=Rn.44637 /LL=81817 /DEF=Rattus norvegicus mRNA for USF2 splicing variant-3, complete cds. /PROD=USF2 splicing variant-3 /FL=gb:AB035650.1 AB035650 upstream transcription factor 2, c-fos interacting Usf2 81817 NM_031139 0000432 // positive regulation of transcription from RNA polymerase II promoter by glucose // inferred from electronic annotation /// 0000432 // positive regulation of transcription from RNA polymerase II promoter by glucose // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007595 // lactation // inferred from electronic annotation /// 0007595 // lactation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0055088 // lipid homeostasis // inferred from electronic annotation /// 0055088 // lipid homeostasis // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from mutant phenotype /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0043425 // bHLH transcription factor binding // inferred from electronic annotation /// 0043425 // bHLH transcription factor binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from mutant phenotype /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 1388089_a_at AY050655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY050655.1 /DB_XREF=gi:15808679 /GEN=Rnf4 /FEA=FLmRNA /CNT=1 /TID=Rn.30015.2 /TIER=FL /STK=1 /UG=Rn.30015 /LL=29274 /DEF=Rattus norvegicus small nuclear RING finger protein (Rnf4) mRNA, complete cds, alternatively spliced. /PROD=small nuclear RING finger protein /FL=gb:AY050655.1 AY050655 ring finger protein 4 Rnf4 29274 NM_019182 0006350 // transcription // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016567 // protein ubiquitination // inferred from mutant phenotype /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0051865 // protein autoubiquitination // inferred from mutant phenotype /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay /// 0070936 // protein K48-linked ubiquitination // inferred from direct assay /// 0070979 // protein K11-linked ubiquitination // inferred from direct assay /// 0085020 // protein K6-linked ubiquitination // inferred from direct assay /// 0090169 // regulation of spindle assembly // not recorded /// 0090169 // regulation of spindle assembly // inferred from sequence or structural similarity /// 0090234 // regulation of kinetochore assembly // not recorded /// 0090234 // regulation of kinetochore assembly // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activity // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from mutant phenotype /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0017025 // TATA-binding protein binding // traceable author statement /// 0031491 // nucleosome binding // inferred from direct assay /// 0032184 // SUMO polymer binding // inferred from physical interaction /// 0042156 // zinc-mediated transcriptional activator activity // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // inferred from physical interaction 1388090_a_at D83509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D83509.1 /DB_XREF=gi:2443317 /FEA=FLmRNA /CNT=1 /TID=Rn.22394.2 /TIER=FL /STK=1 /UG=Rn.22394 /LL=24336 /UG_GENE=Epor /DEF=Rattus norvegicus mRNA for intron 5-inserted form of erythropoietin receptor, complete cds. /PROD=intron 5-inserted form of erythropoietinreceptor /FL=gb:D83509.1 D83509 erythropoietin receptor Epor 24336 NM_017002 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0046697 // decidualization // inferred from electronic annotation /// 0046697 // decidualization // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004900 // erythropoietin receptor activity // inferred from direct assay /// 0004900 // erythropoietin receptor activity // not recorded /// 0004900 // erythropoietin receptor activity // inferred from sequence or structural similarity /// 0004900 // erythropoietin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388091_at M64391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M64391.1 /DB_XREF=gi:205843 /FEA=FLmRNA /CNT=1 /TID=Rn.44385.3 /TIER=FL /STK=1 /UG=Rn.44385 /LL=65140 /UG_GENE=Olfr41 /DEF=Rat olfactory protein mRNA, complete cds. /PROD=olfactory protein /FL=gb:M64391.1 M64391 olfactory receptor 1500 Olr1500 405281 NM_001000942 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from reviewed computational analysis /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050911 // detection of chemical stimulus involved in sensory perception of smell // inferred from reviewed computational analysis 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from reviewed computational analysis /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from reviewed computational analysis /// 0004984 // olfactory receptor activity // inferred from electronic annotation 1388092_at M64387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M64387.1 /DB_XREF=gi:205835 /FEA=FLmRNA /CNT=1 /TID=Rn.44385.4 /TIER=FL /STK=1 /UG=Rn.44385 /LL=65140 /UG_GENE=Olfr41 /DEF=Rat olfactory protein mRNA, complete cds. /PROD=olfactory protein /FL=gb:M64387.1 M64387 olfactory receptor gene Olr1493 Olr1493 363640 NM_001006609 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from electronic annotation 1388093_at AF240768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF240768.1 /DB_XREF=gi:7288875 /FEA=FLmRNA /CNT=1 /TID=Rn.48794.1 /TIER=FL /STK=1 /UG=Rn.48794 /DEF=Rattus norvegicus taste receptor rT2R12 mRNA, complete cds. /PROD=taste receptor rT2R12 /FL=gb:AF240768.1 AF240768 taste receptor, type 2, member 126 Tas2r126 246219 NM_139335 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0008527 // taste receptor activity // traceable author statement 1388094_at M36804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M36804.1 /DB_XREF=gi:204182 /FEA=FLmRNA /CNT=1 /TID=Affx.1.65 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rat follicle stimulating hormone beta-subunit mRNA, complete cds. /FL=gb:M36804.1 M36804 follicle stimulating hormone, beta polypeptide Fshb 25447 NM_001007597 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0042699 // follicle-stimulating hormone signaling pathway // traceable author statement /// 0060011 // Sertoli cell proliferation // inferred from electronic annotation /// 0060011 // Sertoli cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0016914 // follicle-stimulating hormone complex // traceable author statement 0005179 // hormone activity // inferred from electronic annotation /// 0016913 // follicle-stimulating hormone activity // traceable author statement 1388095_at M60388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M60388.1 /DB_XREF=gi:204583 /GEN=hemiferrin /FEA=FLmRNA /CNT=1 /TID=Rn.10947.1 /TIER=FL /STK=1 /UG=Rn.10947 /DEF=Rattus hemiferrin mRNA, complete cds. /PROD=hemiferrin /FL=gb:M60388.1 M60388 hemiferrin, transferrin-like protein LOC286987 286987 NM_173321 0006826 // iron ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0008199 // ferric iron binding // inferred from electronic annotation 1388096_at AF071204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF071204.1 /DB_XREF=gi:4106383 /FEA=FLmRNA /CNT=1 /TID=Rn.44216.1 /TIER=FL /STK=1 /UG=Rn.44216 /LL=60427 /UG_GENE=LOC60427 /DEF=Rattus norvegicus stem cell factor KL-1 precursor, mRNA, complete cds. /PROD=stem cell factor KL-1 precursor /FL=gb:AF071204.1 AF071204 KIT ligand Kitlg 60427 NM_021843 /// NM_021844 0001541 // ovarian follicle development // inferred from direct assay /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0002763 // positive regulation of myeloid leukocyte differentiation // inferred from electronic annotation /// 0002763 // positive regulation of myeloid leukocyte differentiation // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0033026 // negative regulation of mast cell apoptosis // inferred from electronic annotation /// 0033026 // negative regulation of mast cell apoptosis // not recorded /// 0035234 // germ cell programmed cell death // inferred from electronic annotation /// 0035234 // germ cell programmed cell death // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // not recorded /// 0045636 // positive regulation of melanocyte differentiation // inferred from electronic annotation /// 0045636 // positive regulation of melanocyte differentiation // not recorded /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0070668 // positive regulation of mast cell proliferation // inferred from electronic annotation /// 0070668 // positive regulation of mast cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005173 // stem cell factor receptor binding // inferred from electronic annotation /// 0005173 // stem cell factor receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1388097_at AF361342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF361342.1 /DB_XREF=gi:17974517 /GEN=Cacng5 /FEA=FLmRNA /CNT=1 /TID=Rn.81219.1 /TIER=FL /STK=1 /UG=Rn.81219 /DEF=Rattus norvegicus voltage-dependent calcium channel gamma-5 subunit (Cacng5) mRNA, complete cds. /PROD=voltage-dependent calcium channel gamma-5subunit /FL=gb:AF361342.1 AF361342 calcium channel, voltage-dependent, gamma subunit 5 Cacng5 140726 NM_080693 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation 1388098_at AF007890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF007890.1 /DB_XREF=gi:3213192 /GEN=rs11 /FEA=FLmRNA /CNT=1 /TID=Rn.30072.1 /TIER=FL /STK=1 /UG=Rn.30072 /DEF=Rattus norvegicus resection-induced TPI (rs11) mRNA, complete cds. /PROD=resection-induced TPI /FL=gb:AF007890.1 AF007890 resection-induced TPI (rs11) LOC246267 246267 NM_144751 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004807 // triose-phosphate isomerase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1388099_a_at AB029495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB029495.1 /DB_XREF=gi:6970378 /GEN=amida /FEA=FLmRNA /CNT=12 /TID=Rn.12922.1 /TIER=FL /STK=5 /UG=Rn.12922 /LL=85423 /DEF=Rattus norvegicus mRNA for Amida, complete cds. /PROD=Amida /FL=gb:AB029495.1 AB029495 TCF3 (E2A) fusion partner Tfpt 85423 NM_138870 0006917 // induction of apoptosis // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from direct assay 1388100_at AF177478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF177478.1 /DB_XREF=gi:7330739 /FEA=FLmRNA /CNT=5 /TID=Rn.25368.1 /TIER=FL /STK=4 /UG=Rn.25368 /DEF=Rattus norvegicus clone C48 CDK5 activator-binding protein mRNA, complete cds. /PROD=CDK5 activator-binding protein /FL=gb:AF177478.1 AF177478 CDK5 regulatory subunit associated protein 2 Cdk5rap2 286919 NM_173134 /// XM_001059116 /// XM_575844 0000226 // microtubule cytoskeleton organization // inferred from sequence or structural similarity /// 0001578 // microtubule bundle formation // inferred from sequence or structural similarity /// 0007059 // chromosome segregation // inferred from sequence or structural similarity /// 0007420 // brain development // traceable author statement /// 0045664 // regulation of neuron differentiation // traceable author statement /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0051297 // centrosome organization // inferred from sequence or structural similarity /// 0090231 // regulation of spindle checkpoint // inferred from sequence or structural similarity 0000242 // pericentriolar material // inferred from sequence or structural similarity /// 0000922 // spindle pole // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0008017 // microtubule binding // not recorded /// 0010843 // promoter binding // inferred from sequence or structural similarity /// 0032403 // protein complex binding // inferred from direct assay /// 0042808 // neuronal Cdc2-like kinase binding // inferred from physical interaction /// 0042808 // neuronal Cdc2-like kinase binding // not recorded /// 0042808 // neuronal Cdc2-like kinase binding // inferred from sequence or structural similarity 1388101_at AF389425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF389425.1 /DB_XREF=gi:14518292 /GEN=Crmp4 /FEA=FLmRNA /CNT=8 /TID=Rn.8499.1 /TIER=FL /STK=3 /UG=Rn.8499 /DEF=Rattus norvegicus collapsin response mediator protein 4 (Crmp4) mRNA, complete cds. /PROD=collapsin response mediator protein 4 /FL=gb:AF389425.1 AF389425 dihydropyrimidinase-like 3 Dpysl3 25418 NM_012934 0007399 // nervous system development // not recorded /// 0010976 // positive regulation of neuron projection development // inferred from direct assay /// 0048666 // neuron development // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030426 // growth cone // inferred from direct assay /// 0030426 // growth cone // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0070382 // exocytic vesicle // inferred from direct assay 0016787 // hydrolase activity // inferred from electronic annotation /// 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from direct assay /// 0035374 // chondroitin sulfate binding // inferred from direct assay 1388102_at U66322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U66322.2 /DB_XREF=gi:6012070 /GEN=DIG-1 /FEA=FLmRNA /CNT=7 /TID=Rn.10656.1 /TIER=FL /STK=1 /UG=Rn.10656 /DEF=Rattus norvegicus dithiolethione-inducible gene-1 (DIG-1) mRNA, complete cds. /PROD=dithiolethione-inducible gene-1 /FL=gb:U66322.2 U66322 prostaglandin reductase 1 Ptgr1 192227 NM_138863 0008152 // metabolic process // inferred from electronic annotation /// 0009636 // response to toxin // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0032440 // 2-alkenal reductase activity // inferred from electronic annotation /// 0047522 // 15-oxoprostaglandin 13-oxidase activity // inferred from electronic annotation 1388103_at AF361355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF361355.1 /DB_XREF=gi:17974543 /FEA=FLmRNA /CNT=11 /TID=Rn.2975.1 /TIER=FL /STK=0 /UG=Rn.2975 /DEF=Rattus norvegicus voltage-dependent calcium channel gamma subunit-like protein mRNA, complete cds. /PROD=voltage-dependent calcium channel gammasubunit-like protein /FL=gb:AF361355.1 AF361355 transmembrane protein 37 Tmem37 245953 NM_139095 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation 1388104_at BI300274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300274 /DB_XREF=gi:14976554 /DB_XREF=UI-R-CV2-cid-a-09-0-UI.s1 /CLONE=UI-R-CV2-cid-a-09-0-UI /FEA=FLmRNA /CNT=27 /TID=Rn.30054.1 /TIER=Stack /STK=21 /UG=Rn.30054 /UG_TITLE=Rattus norvegicus G protein-coupled receptor LGR4 (LGR4) mRNA, complete cds /FL=gb:AF061443.1 BI300274 leucine-rich repeat-containing G protein-coupled receptor 4 Lgr4 286994 NM_173328 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0030539 // male genitalia development // not recorded /// 0035239 // tube morphogenesis // not recorded /// 0050673 // epithelial cell proliferation // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016500 // protein-hormone receptor activity // inferred from electronic annotation 1388105_at BE113021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113021 /DB_XREF=gi:8505126 /DB_XREF=UI-R-BJ1-awf-e-02-0-UI.s1 /CLONE=UI-R-BJ1-awf-e-02-0-UI /FEA=FLmRNA /CNT=28 /TID=Rn.11096.1 /TIER=Stack /STK=9 /UG=Rn.11096 /LL=116656 /UG_GENE=D123 /UG_TITLE=D123 gene product /FL=gb:U34843.1 BE113021 cell division cycle 123 homolog (S. cerevisiae) Cdc123 116656 NM_053877 0000080 // G1 phase of mitotic cell cycle // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1388106_x_at BI285266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285266 /DB_XREF=gi:14938729 /DB_XREF=UI-R-DB0-byy-a-12-0-UI.s1 /CLONE=UI-R-DB0-byy-a-12-0-UI /FEA=FLmRNA /CNT=45 /TID=Rn.10041.1 /TIER=Stack /STK=8 /UG=Rn.10041 /UG_TITLE=Rat prostatic 22-kD glycoprotein mRNA, complete cds /FL=gb:M58169.1 BI285266 cystatin related protein 2 P22k15 296229 NM_199266 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1388107_at BF282131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282131 /DB_XREF=gi:11213201 /DB_XREF=EST446722 /CLONE=RGIDC49 /FEA=FLmRNA /CNT=16 /TID=Rn.8898.1 /TIER=Stack /STK=6 /UG=Rn.8898 /UG_TITLE=Rattus norvegicus protein phosphatase 2A B regulatory subunit delta isoform mRNA, complete cds /FL=gb:AF180350.1 BF282131 protein phosphatase 2, regulatory subunit B, delta isoform Ppp2r2d 246255 NM_144746 0007165 // signal transduction // inferred from electronic annotation 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // traceable author statement 0008195 // phosphatidate phosphatase activity // not recorded /// 0008601 // protein phosphatase type 2A regulator activity // inferred from electronic annotation 1388108_at BE116152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116152 /DB_XREF=gi:8508257 /DB_XREF=UI-R-BS1-aya-a-07-0-UI.s1 /CLONE=UI-R-BS1-aya-a-07-0-UI /FEA=FLmRNA /CNT=15 /TID=Rn.34393.1 /TIER=Stack /STK=8 /UG=Rn.34393 /UG_TITLE=Rattus norvegicus rELO2 mRNA for fatty acid elongase 2, complete cds /FL=gb:AB071986.1 BE116152 ELOVL family member 6, elongation of long chain fatty acids (yeast) Elovl6 171402 NM_134383 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0030497 // fatty acid elongation // inferred from electronic annotation /// 0030497 // fatty acid elongation // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // not recorded 1388109_at BI290677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290677 /DB_XREF=gi:14949473 /DB_XREF=UI-R-DK0-cfy-a-12-0-UI.s1 /CLONE=UI-R-DK0-cfy-a-12-0-UI /FEA=FLmRNA /CNT=12 /TID=Rn.25073.1 /TIER=Stack /STK=7 /UG=Rn.25073 /UG_TITLE=Rattus norvegicus mRNA for seven transmembrane receptor, complete cds /FL=gb:AB019120.1 BI290677 G protein-coupled receptor 116 Gpr116 245977 NM_139110 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1388110_at X61043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X61043.1 /DB_XREF=gi:56079 /GEN=EF1 alpha /FEA=mRNA /CNT=378 /TID=Rn.965.1 /TIER=Stack /STK=245 /UG=Rn.965 /LL=171361 /DEF=R.norvegicus mRNA for elongation factor 1 alpha. /PROD=elongation factor 1 alpha X61043 eukaryotic translation elongation factor 1 alpha 1 /// eukaryotic translation elongation factor 1 alpha 2 /// eukaryotic translation elongation factor 1 alpha 1-like /// similar to eukaryotic translation elongation factor 1 alpha 1 Eef1a1 /// LOC100360150 /// LOC100360413 /// RGD1566344 100360150 /// 100360413 /// 171361 /// 310360 NM_175838 /// XM_002725647 /// XM_002725648 /// XM_002729220 /// XM_002730308 /// XM_002730309 /// XR_007365 /// XR_086163 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0006414 // translational elongation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0043025 // neuronal cell body // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1388111_at J04035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J04035.1 /DB_XREF=gi:207442 /FEA=mRNA /CNT=98 /TID=Rn.54384.1 /TIER=Stack /STK=89 /UG=Rn.54384 /LL=25043 /UG_GENE=Trela /UG_TITLE=Tropoelastin /DEF=Rat tropoelastin mRNA, 3 end. J04035 elastin Eln 25043 NM_012722 0001974 // blood vessel remodeling // inferred from direct assay /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030833 // regulation of actin filament polymerization // inferred from electronic annotation /// 0030833 // regulation of actin filament polymerization // not recorded /// 0043149 // stress fiber assembly // inferred from electronic annotation /// 0043149 // stress fiber assembly // not recorded /// 0048251 // elastic fiber assembly // traceable author statement 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005626 // insoluble fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030023 // extracellular matrix constituent conferring elasticity // inferred from mutant phenotype /// 0050840 // extracellular matrix binding // inferred from electronic annotation /// 0050840 // extracellular matrix binding // not recorded 1388112_at BG666999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666999 /DB_XREF=gi:13888921 /DB_XREF=DRABKC11 /CLONE=DRABKC11 /FEA=mRNA /CNT=82 /TID=Rn.4092.1 /TIER=Stack /STK=49 /UG=Rn.4092 /LL=85333 /UG_GENE=Slc25a4 /UG_TITLE=solute carrier family 25 (mitochondrial adenine nucleotide translocator) member 4 BG666999 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 Slc25a4 85333 NM_053515 0006810 // transport // inferred from electronic annotation /// 0015866 // ADP transport // inferred from direct assay /// 0015867 // ATP transport // inferred from direct assay /// 0051935 // glutamate uptake involved in synaptic transmission // inferred from expression pattern /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060547 // negative regulation of necrotic cell death // inferred from electronic annotation /// 0060547 // negative regulation of necrotic cell death // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000295 // adenine nucleotide transmembrane transporter activity // traceable author statement /// 0005215 // transporter activity // inferred from electronic annotation /// 0005471 // ATP:ADP antiporter activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1388113_at BG673321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG673321 /DB_XREF=gi:13895420 /DB_XREF=DRNBSE09 /CLONE=DRNBSE09 /FEA=mRNA /CNT=63 /TID=Rn.2270.1 /TIER=Stack /STK=45 /UG=Rn.2270 /LL=171335 /UG_GENE=Cox8a /UG_TITLE=cytochrome c oxidase, subunit VIIIa BG673321 cytochrome c oxidase subunit VIIIa Cox8a 171335 NM_134345 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005751 // mitochondrial respiratory chain complex IV // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // traceable author statement /// 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1388114_at X05566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X05566.1 /DB_XREF=gi:57086 /FEA=mRNA /CNT=44 /TID=Rn.6021.1 /TIER=Stack /STK=39 /UG=Rn.6021 /UG_TITLE=Rat mRNA for myosin regulatory light chain (RLC) /DEF=Rat mRNA for myosin regulatory light chain (RLC). X05566 similar to Myosin regulatory light chain 2-A, smooth muscle isoform (Myosin RLC-A) RGD1309537 501203 NM_001135017 0016459 // myosin complex // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003774 // motor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1388115_at D00920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D00920.1 /DB_XREF=gi:220888 /FEA=mRNA /CNT=38 /TID=Rn.43337.1 /TIER=Stack /STK=33 /UG=Rn.43337 /UG_TITLE=Rattus norvegicus androgen-responsive mRNA, clone:pSv-1 /DEF=Rattus norvegicus androgen-responsive mRNA, clone:pSv-1. D00920 seminal vesicle secretion 3 Svs3 192239 NM_001007605 0019953 // sexual reproduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 1388116_at BI285575 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285575 /DB_XREF=gi:14939371 /DB_XREF=UI-R-CW0s-ccb-g-05-0-UI.s1 /CLONE=UI-R-CW0s-ccb-g-05-0-UI /FEA=mRNA /CNT=159 /TID=Rn.2953.1 /TIER=Stack /STK=32 /UG=Rn.2953 /LL=29393 /UG_GENE=Col1a1 /UG_TITLE=procollagen, type I, alpha 1 BI285575 collagen, type I, alpha 1 Col1a1 29393 NM_053304 0001501 // skeletal system development // not recorded /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001503 // ossification // inferred from expression pattern /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0001957 // intramembranous ossification // inferred from electronic annotation /// 0001957 // intramembranous ossification // not recorded /// 0001958 // endochondral ossification // inferred from electronic annotation /// 0001958 // endochondral ossification // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0007601 // visual perception // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010812 // negative regulation of cell-substrate adhesion // inferred from electronic annotation /// 0010812 // negative regulation of cell-substrate adhesion // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0015031 // protein transport // not recorded /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0030199 // collagen fibril organization // not recorded /// 0031960 // response to corticosteroid stimulus // inferred from expression pattern /// 0032964 // collagen biosynthetic process // inferred from electronic annotation /// 0032964 // collagen biosynthetic process // not recorded /// 0034505 // tooth mineralization // inferred from electronic annotation /// 0034505 // tooth mineralization // not recorded /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0043588 // skin development // not recorded /// 0043588 // skin development // inferred from electronic annotation /// 0043589 // skin morphogenesis // inferred from electronic annotation /// 0043589 // skin morphogenesis // not recorded /// 0048705 // skeletal system morphogenesis // not recorded /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // not recorded /// 0051591 // response to cAMP // inferred from expression pattern /// 0060325 // face morphogenesis // inferred from electronic annotation /// 0060325 // face morphogenesis // not recorded /// 0060346 // bone trabecula formation // inferred from electronic annotation /// 0060346 // bone trabecula formation // not recorded /// 0060351 // cartilage development involved in endochondral bone morphogenesis // inferred from electronic annotation /// 0060351 // cartilage development involved in endochondral bone morphogenesis // not recorded /// 0070208 // protein heterotrimerization // inferred from electronic annotation /// 0070208 // protein heterotrimerization // not recorded /// 0071300 // cellular response to retinoic acid // inferred from expression pattern /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen // inferred from electronic annotation /// 0005581 // collagen // not recorded /// 0005584 // collagen type I // inferred from electronic annotation /// 0005584 // collagen type I // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0048407 // platelet-derived growth factor binding // inferred from electronic annotation /// 0048407 // platelet-derived growth factor binding // not recorded 1388117_at AI411893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411893 /DB_XREF=gi:4255397 /DB_XREF=EST240187 /CLONE=RKIEK08 /FEA=mRNA /CNT=40 /TID=Rn.3437.1 /TIER=Stack /STK=29 /UG=Rn.3437 /LL=171365 /UG_GENE=Snrpb /UG_TITLE=small nuclear ribonucleoprotein polypeptides B and B1 AI411893 small nuclear ribonucleoprotein polypeptides B and B1 Snrpb 171365 NM_134358 0000387 // spliceosomal snRNP assembly // not recorded /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005683 // U7 snRNP // not recorded /// 0005683 // U7 snRNP // inferred from sequence or structural similarity /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0071204 // histone pre-mRNA 3'end processing complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0071208 // histone pre-mRNA DCP binding // inferred from electronic annotation 1388118_at AI176586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176586 /DB_XREF=gi:4134897 /DB_XREF=EST220174 /CLONE=ROVBU20 /FEA=mRNA /CNT=32 /TID=Rn.73.1 /TIER=Stack /STK=24 /UG=Rn.73 /LL=63938 /UG_GENE=HIBADH /UG_TITLE=3-hydroxyisobutyrate dehydrogenase AI176586 3-hydroxyisobutyrate dehydrogenase Hibadh 63938 NM_022243 0006098 // pentose-phosphate shunt // inferred from electronic annotation /// 0006573 // valine metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004616 // phosphogluconate dehydrogenase (decarboxylating) activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008442 // 3-hydroxyisobutyrate dehydrogenase activity // inferred from electronic annotation /// 0008442 // 3-hydroxyisobutyrate dehydrogenase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation 1388119_at BM392140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392140 /DB_XREF=gi:18192193 /DB_XREF=UI-R-DO1-ckp-c-12-0-UI.s1 /CLONE=UI-R-DO1-ckp-c-12-0-UI /FEA=mRNA /CNT=88 /TID=Rn.54869.1 /TIER=Stack /STK=17 /UG=Rn.54869 /UG_TITLE=Rattus norvegicus mRNA for hnRNP protein, partial BM392140 heterogeneous nuclear ribonucleoprotein A3 Hnrnpa3 362152 NM_001111294 /// NM_001111295 /// NM_198132 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0051028 // mRNA transport // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from mutant phenotype /// 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030530 // heterogeneous nuclear ribonucleoprotein complex // inferred from mutant phenotype 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0051033 // RNA transmembrane transporter activity // inferred from mutant phenotype 1388120_at BE328942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE328942 /DB_XREF=gi:9202718 /DB_XREF=hq35a05.x1 /CLONE=IMAGE:3121328 /FEA=mRNA /CNT=29 /TID=Rn.1588.1 /TIER=Stack /STK=23 /UG=Rn.1588 /LL=64323 /UG_GENE=Pdcd6ip /UG_TITLE=ALG-2 interacting protein 1 BE328942 programmed cell death 6 interacting protein Pdcd6ip 501083 NM_001029910 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from direct assay /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // not recorded /// 0048306 // calcium-dependent protein binding // not recorded 1388121_at M31322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M31322.1 /DB_XREF=gi:207693 /FEA=mRNA /CNT=41 /TID=Rn.1423.1 /TIER=Stack /STK=21 /UG=Rn.1423 /LL=64312 /UG_GENE=LOC64312 /UG_TITLE=sperm membrane protein (YWK-II) /DEF=Rat sperm membrane protein (YWK-II) mRNA, 3 end. M31322 amyloid beta (A4) precursor-like protein 2 Aplp2 64312 XM_001056214 /// XM_343513 0001967 // suckling behavior // not recorded /// 0006878 // cellular copper ion homeostasis // not recorded /// 0007176 // regulation of epidermal growth factor receptor activity // not recorded /// 0007617 // mating behavior // not recorded /// 0007626 // locomotory behavior // not recorded /// 0009790 // embryo development // not recorded /// 0030198 // extracellular matrix organization // not recorded /// 0030900 // forebrain development // not recorded /// 0030901 // midbrain development // not recorded /// 0050885 // neuromuscular process controlling balance // not recorded 0005634 // nucleus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1388122_at X02904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X02904.1 /DB_XREF=gi:56335 /FEA=mRNA /CNT=31 /TID=Rn.44821.1 /TIER=Stack /STK=20 /UG=Rn.44821 /LL=24426 /UG_GENE=Gstp /UG_TITLE=Glutathione-S-transferase, placental enzyme pi type /DEF=Rat mRNA for glutathione S-transferase P subunit. X02904 glutathione S-transferase pi 1 Gstp1 24426 NM_012577 0006749 // glutathione metabolic process // not recorded /// 0006805 // xenobiotic metabolic process // inferred from direct assay /// 0006805 // xenobiotic metabolic process // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009636 // response to toxin // inferred from expression pattern /// 0014003 // oligodendrocyte development // inferred from expression pattern /// 0031100 // organ regeneration // inferred from expression pattern /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0033591 // response to L-ascorbic acid // inferred from expression pattern /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0071364 // cellular response to epidermal growth factor stimulus // inferred from expression pattern /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern /// 0071460 // cellular response to cell-matrix adhesion // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0004364 // glutathione transferase activity // inferred from direct assay /// 0004364 // glutathione transferase activity // not recorded /// 0004364 // glutathione transferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008144 // drug binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0043295 // glutathione binding // inferred from direct assay 1388123_at BI279003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279003 /DB_XREF=gi:14926400 /DB_XREF=UI-R-DB0-byt-h-11-0-UI.s1 /CLONE=UI-R-DB0-byt-h-11-0-UI /FEA=mRNA /CNT=24 /TID=Rn.10394.1 /TIER=Stack /STK=20 /UG=Rn.10394 /UG_TITLE=Rat messenger RNA for prostatic steroid binding protein (subunit C2) BI279003 prostatic steroid-binding protein C2 Psbpc2 293731 NM_207593 0005576 // extracellular region // traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005496 // steroid binding // traceable author statement /// 0005496 // steroid binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation 1388124_at BI277835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277835 /DB_XREF=gi:14924093 /DB_XREF=UI-R-CX0-bxk-b-08-0-UI.s1 /CLONE=UI-R-CX0-bxk-b-08-0-UI /FEA=mRNA /CNT=19 /TID=Rn.34875.1 /TIER=Stack /STK=16 /UG=Rn.34875 /LL=29174 /UG_GENE=Ctsj /UG_TITLE=cathepsin J BI277835 cathepsin J Ctsj 29174 NM_017121 0006508 // proteolysis // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // non-traceable author statement /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1388125_a_at AI576961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576961 /DB_XREF=gi:4561337 /DB_XREF=UI-R-AD0-wa-f-12-0-UI.s1 /CLONE=UI-R-AD0-wa-f-12-0-UI /FEA=mRNA /CNT=42 /TID=Rn.6013.1 /TIER=Stack /STK=13 /UG=Rn.6013 /LL=171041 /UG_GENE=Klc1 /UG_TITLE=kinesin light chain 1 AI576961 kinesin light chain 1 Klc1 171041 NM_001081972 /// NM_001081973 /// NM_001081974 0008088 // axon cargo transport // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005871 // kinesin complex // inferred from direct assay /// 0005871 // kinesin complex // inferred from electronic annotation /// 0005871 // kinesin complex // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0031410 // cytoplasmic vesicle // not recorded /// 0035253 // ciliary rootlet // not recorded /// 0043005 // neuron projection // not recorded /// 0043227 // membrane-bounded organelle // not recorded 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1388126_at BG380493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380493 /DB_XREF=gi:13304965 /DB_XREF=UI-R-CT0-btx-h-06-0-UI.s1 /CLONE=UI-R-CT0-btx-h-06-0-UI /FEA=mRNA /CNT=25 /TID=Rn.27882.1 /TIER=Stack /STK=14 /UG=Rn.27882 /LL=29688 /UG_GENE=Minpp1 /UG_TITLE=multiple inositol polyphosphate histidine phosphatase 1 BG380493 multiple inositol polyphosphate histidine phosphatase 1 Minpp1 29688 NM_019263 0048015 // phosphoinositide-mediated signaling // non-traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 0003993 // acid phosphatase activity // inferred from electronic annotation /// 0004446 // multiple inositol-polyphosphate phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030351 // inositol-1,3,4,5,6-pentakisphosphate 3-phosphatase activity // inferred from direct assay /// 0030352 // inositol-1,4,5,6-tetrakisphosphate 6-phosphatase activity // inferred from direct assay /// 0034417 // bisphosphoglycerate 3-phosphatase activity // inferred from electronic annotation /// 0034417 // bisphosphoglycerate 3-phosphatase activity // not recorded 1388127_at AI170346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170346 /DB_XREF=gi:3710386 /DB_XREF=EST216272 /CLONE=RLUCH20 /FEA=mRNA /CNT=17 /TID=Rn.8023.1 /TIER=Stack /STK=14 /UG=Rn.8023 /UG_TITLE=Rattus norvegicus cytochrome P450-like protein mRNA, partial cds AI170346 cytochrome P450, family 4, subfamily v, polypeptide 3 Cyp4v3 266761 NM_001135600 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388128_at BI292004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292004 /DB_XREF=gi:14952080 /DB_XREF=UI-R-DN0-civ-p-09-0-UI.s1 /CLONE=UI-R-DN0-civ-p-09-0-UI /FEA=mRNA /CNT=46 /TID=Rn.8252.1 /TIER=ConsEnd /STK=1 /UG=Rn.8252 /LL=81732 /UG_GENE=Actr3 /UG_TITLE=actin-related protein 3 BI292004 ARP3 actin-related protein 3 homolog (yeast) Actr3 81732 NM_031068 0009743 // response to carbohydrate stimulus // inferred from expression pattern /// 0010592 // positive regulation of lamellipodium assembly // inferred from mutant phenotype /// 0030833 // regulation of actin filament polymerization // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // inferred from mutant phenotype /// 0043519 // regulation of myosin II filament assembly or disassembly // inferred from mutant phenotype /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0046677 // response to antibiotic // inferred from expression pattern /// 0050775 // positive regulation of dendrite morphogenesis // inferred from mutant phenotype /// 0051491 // positive regulation of filopodium assembly // inferred from mutant phenotype /// 0051789 // response to protein stimulus // inferred from expression pattern 0000139 // Golgi membrane // inferred from direct assay /// 0002102 // podosome // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // inferred from direct assay /// 0030027 // lamellipodium // inferred from direct assay /// 0030027 // lamellipodium // not recorded /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030056 // hemidesmosome // inferred from direct assay /// 0031252 // cell leading edge // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0060076 // excitatory synapse // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1388129_at L08814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L08814.1 /DB_XREF=gi:203464 /GEN=CIIDBP /FEA=mRNA /CNT=20 /TID=Rn.35908.1 /TIER=Stack /STK=13 /UG=Rn.35908 /LL=81785 /UG_TITLE=Structure specific recognition protein 1 /DEF=Rat CIIDBP (homologous to human SSRP-1 and mouse T160 genes) mRNA, 3 end. L08814 structure specific recognition protein 1 Ssrp1 81785 NM_031121 0006260 // DNA replication // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable author statement /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // non-traceable author statement 1388130_at AA943537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943537 /DB_XREF=gi:3103453 /DB_XREF=EST199036 /CLONE=RBRAL19 /FEA=mRNA /CNT=24 /TID=Rn.7588.1 /TIER=Stack /STK=12 /UG=Rn.7588 /LL=114636 /UG_GENE=Zyx /UG_TITLE=zyxin AA943537 zyxin Zyx 114636 NM_053761 0050727 // regulation of inflammatory response // inferred from expression pattern 0001725 // stress fiber // not recorded /// 0005737 // cytoplasm // not recorded /// 0005913 // cell-cell adherens junction // not recorded /// 0005925 // focal adhesion // not recorded 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388131_at X03369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X03369.1 /DB_XREF=gi:57428 /FEA=mRNA /CNT=15 /TID=Rn.37849.1 /TIER=Stack /STK=12 /UG=Rn.37849 /UG_TITLE=Rat mRNA for beta-tubulin T beta15 /DEF=Rat mRNA for beta-tubulin T beta15. X03369 tubulin, beta 2b Tubb2b 291081 NM_001013886 0001764 // neuron migration // inferred from mutant phenotype /// 0001764 // neuron migration // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007067 // mitosis // inferred from mutant phenotype /// 0007411 // axon guidance // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from mutant phenotype /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0032720 // negative regulation of tumor necrosis factor production // inferred from electronic annotation /// 0051225 // spindle assembly // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation /// 0070914 // UV-damage excision repair // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0004980 // melanocyte-stimulating hormone receptor activity // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0042277 // peptide binding // inferred from physical interaction /// 0042288 // MHC class I protein binding // inferred from electronic annotation 1388132_at BE107056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107056 /DB_XREF=gi:8499161 /DB_XREF=UI-R-BS1-ayp-c-11-0-UI.s1 /CLONE=UI-R-BS1-ayp-c-11-0-UI /FEA=mRNA /CNT=35 /TID=Rn.54645.1 /TIER=Stack /STK=11 /UG=Rn.54645 /UG_TITLE=Rattus norvegicus NonOp54nrb homolog mRNA, partial cds BE107056 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) Sfpq 252855 NM_001025271 0000380 // alternative nuclear mRNA splicing, via spliceosome // inferred from electronic annotation /// 0000380 // alternative nuclear mRNA splicing, via spliceosome // not recorded 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded /// 0042382 // paraspeckles // inferred from electronic annotation /// 0042382 // paraspeckles // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1388133_at AA800228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800228 /DB_XREF=gi:2863183 /DB_XREF=EST189725 /CLONE=RHEAM68 /FEA=mRNA /CNT=15 /TID=Rn.1171.1 /TIER=Stack /STK=11 /UG=Rn.1171 /UG_TITLE=R.norvegicus mRNA for unknown protein (PIPPin) AA800228 cold shock domain containing C2, RNA binding Csdc2 266600 NM_001170542 /// XM_001077363 /// XM_345860 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388134_at BG380216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380216 /DB_XREF=gi:13304688 /DB_XREF=UI-R-CS0-btq-d-07-0-UI.s1 /CLONE=UI-R-CS0-btq-d-07-0-UI /FEA=mRNA /CNT=14 /TID=Rn.971.1 /TIER=Stack /STK=11 /UG=Rn.971 /LL=94171 /UG_GENE=Eef1d /UG_TITLE=translation elongation factor 1-delta subunit BG380216 eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) Eef1d 300033 NM_001013104 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0006414 // translational elongation // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0005829 // cytosol // not recorded /// 0005853 // eukaryotic translation elongation factor 1 complex // inferred from electronic annotation 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388135_at BM385924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385924 /DB_XREF=gi:18185977 /DB_XREF=UI-R-DN1-ckf-k-13-0-UI.s1 /CLONE=UI-R-DN1-ckf-k-13-0-UI /FEA=mRNA /CNT=12 /TID=Rn.40389.1 /TIER=Stack /STK=11 /UG=Rn.40389 /LL=59102 /UG_GENE=Rpa2 /UG_TITLE=p32-subunit of replication protein A BM385924 replication protein A2 Rpa2 59102 NM_021582 0000718 // nucleotide-excision repair, DNA damage removal // not recorded /// 0006260 // DNA replication // inferred by curator /// 0006260 // DNA replication // not recorded /// 0006260 // DNA replication // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006284 // base-excision repair // non-traceable author statement /// 0006297 // nucleotide-excision repair, DNA gap filling // not recorded /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005662 // DNA replication factor A complex // inferred from direct assay /// 0005662 // DNA replication factor A complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from mutant phenotype 1388136_at BF282660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282660 /DB_XREF=gi:11213730 /DB_XREF=EST447251 /CLONE=RGIDR37 /FEA=mRNA /CNT=17 /TID=Rn.8459.1 /TIER=Stack /STK=10 /UG=Rn.8459 /LL=171139 /UG_GENE=Timm9 /UG_TITLE=translocase of inner mitochondrial membrane 9 homolog (yeast) BF282660 translocase of inner mitochondrial membrane 9 homolog (yeast) Timm9 171139 XM_001072892 /// XM_001080501 /// XM_002726750 /// XM_002726751 /// XM_002729633 /// XM_002729634 0006626 // protein targeting to mitochondrion // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0045039 // protein import into mitochondrial inner membrane // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0042719 // mitochondrial intermembrane space protein transporter complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1388137_a_at AA955230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955230 /DB_XREF=gi:4237592 /DB_XREF=UI-R-A1-ej-f-12-0-UI.s1 /CLONE=UI-R-A1-ej-f-12-0-UI /FEA=mRNA /CNT=11 /TID=Rn.8714.1 /TIER=Stack /STK=10 /UG=Rn.8714 /LL=94269 /UG_GENE=Fez2 /UG_TITLE=fasciculation and elongation protein zeta 2 (zygin II) AA955230 fasciculation and elongation protein zeta 2 (zygin II) Fez2 94269 NM_053600 0017157 // regulation of exocytosis // traceable author statement 0005515 // protein binding // not recorded 1388138_at X89963 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X89963.1 /DB_XREF=gi:929834 /GEN=TSP-4 /FEA=mRNA /CNT=16 /TID=Rn.11207.1 /TIER=Stack /STK=9 /UG=Rn.11207 /LL=29220 /DEF=R.norvegicus mRNA TSP-4 protein. /PROD=thrombospondin-4 X89963 thrombospondin 4 Thbs4 29220 XM_001066338 /// XM_342172 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007399 // nervous system development // inferred from direct assay /// 0016525 // negative regulation of angiogenesis // not recorded /// 0048812 // neuron projection morphogenesis // inferred from direct assay /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051451 // myoblast migration // not recorded /// 0071603 // endothelial cell-cell adhesion // not recorded /// 0090023 // positive regulation of neutrophil chemotaxis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from direct assay /// 0005604 // basement membrane // not recorded /// 0005615 // extracellular space // not recorded /// 0031093 // platelet alpha granule lumen // not recorded /// 0031594 // neuromuscular junction // inferred from direct assay 0001968 // fibronectin binding // inferred from direct assay /// 0005178 // integrin binding // not recorded /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005518 // collagen binding // inferred from direct assay /// 0008201 // heparin binding // not recorded /// 0043237 // laminin-1 binding // inferred from direct assay 1388139_at BI277586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277586 /DB_XREF=gi:14923604 /DB_XREF=UI-R-CY0-bxt-a-07-0-UI.s1 /CLONE=UI-R-CY0-bxt-a-07-0-UI /FEA=mRNA /CNT=11 /TID=Rn.10092.1 /TIER=Stack /STK=9 /UG=Rn.10092 /LL=54274 /UG_GENE=Myh4 /UG_TITLE=Myosin, heavy polypeptide 4, skeletal muscle BI277586 myosin, heavy chain 2, skeletal muscle, adult Myh2 691644 NM_001135157 0001778 // plasma membrane repair // not recorded /// 0006936 // muscle contraction // not recorded /// 0006936 // muscle contraction // inferred from electronic annotation /// 0006936 // muscle contraction // inferred from direct assay /// 0006941 // striated muscle contraction // traceable author statement /// 0014823 // response to activity // not recorded /// 0031034 // myosin filament assembly // traceable author statement 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005826 // actomyosin contractile ring // not recorded /// 0005859 // muscle myosin complex // inferred from direct assay /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0016459 // myosin complex // inferred from electronic annotation /// 0030016 // myofibril // not recorded /// 0030016 // myofibril // inferred from electronic annotation /// 0031672 // A band // not recorded /// 0032982 // myosin filament // inferred from electronic annotation /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from electronic annotation 0000146 // microfilament motor activity // traceable author statement /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // traceable author statement 1388140_at AW253722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253722 /DB_XREF=gi:6597313 /DB_XREF=UI-R-BJ0-aes-e-10-0-UI.s1 /CLONE=UI-R-BJ0-aes-e-10-0-UI /FEA=mRNA /CNT=11 /TID=Rn.9819.1 /TIER=Stack /STK=9 /UG=Rn.9819 /LL=81756 /UG_GENE=Rab13 /UG_TITLE=RAB13 AW253722 RAB13, member RAS oncogene family Rab13 81756 NM_031092 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0005923 // tight junction // inferred from electronic annotation /// 0005923 // tight junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1388141_at BI293883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293883 /DB_XREF=gi:14955805 /DB_XREF=UI-R-DK0-cdw-b-05-0-UI.s1 /CLONE=UI-R-DK0-cdw-b-05-0-UI /FEA=mRNA /CNT=27 /TID=Rn.3974.1 /TIER=Stack /STK=8 /UG=Rn.3974 /UG_TITLE=Rattus norvegicus centrosomal protein centrin 3 mRNA, partial cds BI293883 centrin, EF-hand protein, 3 (CDC31 homolog, yeast) Cetn3 170895 NM_001191842 /// XM_001061358 /// XM_342168 0005814 // centriole // inferred from electronic annotation /// 0005814 // centriole // not recorded /// 0005932 // microtubule basal body // inferred from electronic annotation /// 0005932 // microtubule basal body // not recorded /// 0032391 // photoreceptor connecting cilium // inferred from electronic annotation /// 0032391 // photoreceptor connecting cilium // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit binding // not recorded 1388142_at AA850991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850991 /DB_XREF=gi:2938531 /DB_XREF=EST193759 /CLONE=ROVAP28 /FEA=mRNA /CNT=18 /TID=Rn.35666.2 /TIER=Stack /STK=8 /UG=Rn.35666 /LL=114122 /UG_GENE=Cspg2 /UG_TITLE=chondroitin sulfate proteoglycan 2 (versican) AA850991 versican Vcan 114122 NM_001170558 /// NM_001170559 /// NM_001170560 /// NM_053663 /// XM_001058357 /// XM_215451 0001657 // ureteric bud development // not recorded /// 0006928 // cellular component movement // traceable author statement /// 0007155 // cell adhesion // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0008347 // glial cell migration // inferred from electronic annotation /// 0008347 // glial cell migration // not recorded /// 0009611 // response to wounding // inferred from expression pattern /// 0031103 // axon regeneration // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // traceable author statement 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // traceable author statement /// 0005540 // hyaluronic acid binding // inferred from electronic annotation /// 0030169 // low-density lipoprotein binding // traceable author statement 1388143_at BI288582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288582 /DB_XREF=gi:14945310 /DB_XREF=UI-R-DK0-cdg-e-10-0-UI.s1 /CLONE=UI-R-DK0-cdg-e-10-0-UI /FEA=mRNA /CNT=12 /TID=Rn.39385.1 /TIER=Stack /STK=8 /UG=Rn.39385 /LL=85251 /UG_GENE=Col18a1 /UG_TITLE=collagen type XVIII, alpha 1 chain BI288582 collagen, type XVIII, alpha 1 Col18a1 85251 NM_053489 /// XM_001079576 /// XM_241632 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001886 // endothelial cell morphogenesis // not recorded /// 0001886 // endothelial cell morphogenesis // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0051599 // response to hydrostatic pressure // inferred from expression pattern 0005604 // basement membrane // not recorded /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0030938 // collagen type XVIII // traceable author statement /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1388144_at AI715339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715339 /DB_XREF=gi:5032592 /DB_XREF=UI-R-Y0-abo-c-08-0-UI.s1 /CLONE=UI-R-Y0-abo-c-08-0-UI /FEA=mRNA /CNT=11 /TID=Rn.9785.1 /TIER=Stack /STK=8 /UG=Rn.9785 /LL=25394 /UG_GENE=Bfsp1 /UG_TITLE=Filensin AI715339 beaded filament structural protein 1 Bfsp1 25394 NM_031555 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005882 // intermediate filament // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005212 // structural constituent of eye lens // non-traceable author statement /// 0005212 // structural constituent of eye lens // inferred from electronic annotation 1388145_at BM390128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390128 /DB_XREF=gi:18190181 /DB_XREF=UI-R-CN1-cjp-f-22-0-UI.s1 /CLONE=UI-R-CN1-cjp-f-22-0-UI /FEA=mRNA /CNT=9 /TID=Rn.36545.1 /TIER=Stack /STK=8 /UG=Rn.36545 /LL=25602 /UG_GENE=Tnxa /UG_TITLE=Tenascin X BM390128 tenascin XB Tnxb 415089 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007517 // muscle organ development // non-traceable author statement /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0043206 // fibril organization // inferred from electronic annotation /// 0043506 // regulation of JUN kinase activity // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0005518 // collagen binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation 1388146_at AW523578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523578 /DB_XREF=gi:7165963 /DB_XREF=UI-R-BO0-ahu-f-10-0-UI.s1 /CLONE=UI-R-BO0-ahu-f-10-0-UI /FEA=mRNA /CNT=11 /TID=Rn.25058.1 /TIER=Stack /STK=8 /UG=Rn.25058 /UG_TITLE=Rattus norvegicus brain Ntab mRNA sequence AW523578 1388147_at BI303846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303846 /DB_XREF=gi:14980126 /DB_XREF=UI-R-DS0-cjd-i-10-0-UI.s1 /CLONE=UI-R-DS0-cjd-i-10-0-UI /FEA=mRNA /CNT=8 /TID=Rn.10848.1 /TIER=Stack /STK=8 /UG=Rn.10848 /LL=24573 /UG_GENE=Muc3 /UG_TITLE=Mucin3 BI303846 mucin 3A, cell surface associated Muc3a 687030 XM_001076797 0009725 // response to hormone stimulus // inferred from expression pattern /// 0033189 // response to vitamin A // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay 1388148_a_at AI232268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232268 /DB_XREF=gi:3816148 /DB_XREF=EST228956 /CLONE=RKIBZ49 /FEA=mRNA /CNT=33 /TID=Rn.10293.1 /TIER=Stack /STK=6 /UG=Rn.10293 /LL=116565 /UG_GENE=Lrpap1 /UG_TITLE=low density lipoprotein receptor-related protein associated protein 1 AI232268 low density lipoprotein receptor-related protein associated protein 1 Lrpap1 116565 NM_001169113 0010916 // negative regulation of very-low-density lipoprotein particle clearance // inferred from electronic annotation /// 0010916 // negative regulation of very-low-density lipoprotein particle clearance // not recorded /// 0032091 // negative regulation of protein binding // inferred from electronic annotation /// 0032091 // negative regulation of protein binding // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0048237 // rough endoplasmic reticulum lumen // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0008201 // heparin binding // inferred from electronic annotation /// 0048019 // receptor antagonist activity // inferred from electronic annotation /// 0048019 // receptor antagonist activity // not recorded /// 0050750 // low-density lipoprotein receptor binding // inferred from electronic annotation /// 0050750 // low-density lipoprotein receptor binding // not recorded /// 0070326 // very-low-density lipoprotein receptor binding // inferred from electronic annotation /// 0070326 // very-low-density lipoprotein receptor binding // not recorded 1388149_at X57523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X57523.1 /DB_XREF=gi:56716 /GEN=mtp1 /FEA=mRNA /CNT=16 /TID=Rn.10763.1 /TIER=Stack /STK=7 /UG=Rn.10763 /LL=24811 /UG_TITLE=Transporter 1, ABC (ATP binding cassette) /DEF=R.norvegicus mtp1 mRNA. X57523 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) Tap1 24811 NM_032055 0006810 // transport // inferred from electronic annotation /// 0006952 // defense response // inferred from electronic annotation /// 0006952 // defense response // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0015833 // peptide transport // inferred from mutant phenotype /// 0015833 // peptide transport // not recorded /// 0015833 // peptide transport // inferred from electronic annotation /// 0019060 // intracellular transport of viral proteins in host cell // inferred from electronic annotation /// 0019060 // intracellular transport of viral proteins in host cell // not recorded /// 0019885 // antigen processing and presentation of endogenous peptide antigen via MHC class I // inferred from electronic annotation /// 0019885 // antigen processing and presentation of endogenous peptide antigen via MHC class I // not recorded /// 0042270 // protection from natural killer cell mediated cytotoxicity // inferred from mutant phenotype /// 0046967 // cytosol to ER transport // inferred from electronic annotation /// 0046967 // cytosol to ER transport // not recorded /// 0046968 // peptide antigen transport // traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded /// 0042825 // TAP complex // inferred from direct assay /// 0042825 // TAP complex // inferred from physical interaction /// 0042825 // TAP complex // not recorded /// 0042825 // TAP complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from direct assay /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0015197 // peptide transporter activity // inferred from electronic annotation /// 0015197 // peptide transporter activity // not recorded /// 0015433 // peptide antigen-transporting ATPase activity // traceable author statement /// 0016887 // ATPase activity // inferred from direct assay /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042288 // MHC class I protein binding // inferred from direct assay /// 0042288 // MHC class I protein binding // not recorded /// 0042605 // peptide antigen binding // inferred from direct assay /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0043531 // ADP binding // inferred from direct assay /// 0043531 // ADP binding // not recorded /// 0043531 // ADP binding // inferred from electronic annotation /// 0046978 // TAP1 binding // inferred from physical interaction /// 0046979 // TAP2 binding // inferred from physical interaction /// 0046979 // TAP2 binding // not recorded /// 0046979 // TAP2 binding // inferred from electronic annotation /// 0046980 // tapasin binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from direct assay 1388150_at AW533924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533924 /DB_XREF=gi:7176385 /DB_XREF=UI-R-C4-alr-c-10-0-UI.s1 /CLONE=UI-R-C4-alr-c-10-0-UI /FEA=mRNA /CNT=11 /TID=Rn.34087.1 /TIER=Stack /STK=7 /UG=Rn.34087 /LL=85252 /UG_GENE=Xpo1 /UG_TITLE=exportin 1 (CRM1, yeast, homolog) AW533924 exportin 1, CRM1 homolog (yeast) Xpo1 85252 NM_053490 0006611 // protein export from nucleus // inferred from direct assay /// 0006611 // protein export from nucleus // not recorded /// 0006611 // protein export from nucleus // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0009615 // response to virus // inferred from direct assay /// 0010824 // regulation of centrosome duplication // inferred from electronic annotation /// 0010824 // regulation of centrosome duplication // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0034504 // protein localization in nucleus // inferred from electronic annotation /// 0034504 // protein localization in nucleus // not recorded /// 0042176 // regulation of protein catabolic process // inferred from electronic annotation /// 0042176 // regulation of protein catabolic process // not recorded /// 0046825 // regulation of protein export from nucleus // not recorded /// 0051028 // mRNA transport // inferred from electronic annotation 0000776 // kinetochore // not recorded /// 0000776 // kinetochore // inferred from sequence or structural similarity /// 0000776 // kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005642 // annulate lamellae // inferred from electronic annotation /// 0005642 // annulate lamellae // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0015030 // Cajal body // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0008565 // protein transporter activity // not recorded 1388151_at AI008369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008369 /DB_XREF=gi:3222201 /DB_XREF=EST202820 /CLONE=REMAW43 /FEA=mRNA /CNT=10 /TID=Rn.13808.1 /TIER=Stack /STK=7 /UG=Rn.13808 /UG_TITLE=Rattus norvegicus mRNA for 70 kDa tumor specific antigen, partial AI008369 coronin 7 Coro7 192276 NM_001191639 /// XM_001077234 /// XM_220167 0000139 // Golgi membrane // inferred from electronic annotation /// 0000299 // integral to membrane of membrane fraction // not recorded /// 0000299 // integral to membrane of membrane fraction // inferred from sequence or structural similarity /// 0005625 // soluble fraction // not recorded /// 0005625 // soluble fraction // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 1388152_at BG374290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374290 /DB_XREF=gi:13298762 /DB_XREF=UI-R-CV1-bsn-f-05-0-UI.s1 /CLONE=UI-R-CV1-bsn-f-05-0-UI /FEA=mRNA /CNT=12 /TID=Rn.10484.2 /TIER=Stack /STK=7 /UG=Rn.10484 /LL=25595 /UG_GENE=Map2 /UG_TITLE=Microtubule-associated protein 2 BG374290 microtubule-associated protein 2 Map2 25595 NM_013066 0001578 // microtubule bundle formation // inferred from electronic annotation /// 0001578 // microtubule bundle formation // not recorded /// 0007026 // negative regulation of microtubule depolymerization // inferred from electronic annotation /// 0016358 // dendrite development // inferred from electronic annotation /// 0016358 // dendrite development // not recorded /// 0018107 // peptidyl-threonine phosphorylation // inferred from electronic annotation /// 0018107 // peptidyl-threonine phosphorylation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0019718 // rough microsome // inferred from direct assay /// 0019719 // smooth microsome // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030425 // dendrite // not recorded /// 0030425 // dendrite // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043198 // dendritic shaft // inferred from electronic annotation /// 0043198 // dendritic shaft // not recorded /// 0043234 // protein complex // inferred from direct assay 0002166 // beta-dystroglycan binding // inferred from electronic annotation /// 0002166 // beta-dystroglycan binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation 1388153_at BI277523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277523 /DB_XREF=gi:14923480 /DB_XREF=UI-R-CY0-bxs-c-01-0-UI.s1 /CLONE=UI-R-CY0-bxs-c-01-0-UI /FEA=mRNA /CNT=42 /TID=Rn.6215.1 /TIER=Stack /STK=16 /UG=Rn.6215 /LL=25288 /UG_GENE=Facl2 /UG_TITLE=fatty acid Coenzyme A ligase, long chain 2 BI277523 acyl-CoA synthetase long-chain family member 1 Acsl1 25288 NM_012820 0006629 // lipid metabolic process // traceable author statement /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from mutant phenotype /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from genetic interaction /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0015908 // fatty acid transport // inferred from genetic interaction /// 0034201 // response to oleic acid // inferred from expression pattern /// 0042178 // xenobiotic catabolic process // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0046320 // regulation of fatty acid oxidation // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003987 // acetate-CoA ligase activity // traceable author statement /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from direct assay /// 0004467 // long-chain fatty acid-CoA ligase activity // not recorded /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1388154_at U31668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U31668.1 /DB_XREF=gi:939730 /FEA=mRNA /CNT=11 /TID=Rn.10286.1 /TIER=Stack /STK=6 /UG=Rn.10286 /LL=116651 /UG_GENE=E2f5 /DEF=Rattus norvegicus transcription factor E2F-5 mRNA, partial cds. /PROD=E2F-5 U31668 E2F transcription factor 5 E2f5 116651 XM_001053974 /// XM_574892 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0009887 // organ morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051726 // regulation of cell cycle // traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016528 // sarcoplasm // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay 1388155_at BI286012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286012 /DB_XREF=gi:14940236 /DB_XREF=UI-R-CX0s-ccu-d-10-0-UI.s1 /CLONE=UI-R-CX0s-ccu-d-10-0-UI /FEA=mRNA /CNT=9 /TID=Rn.11104.1 /TIER=Stack /STK=6 /UG=Rn.11104 /UG_TITLE=Rattus norvegicus cytokeratin-18 mRNA, partial cds BI286012 keratin 18 Krt18 294853 NM_053976 0006915 // apoptosis // not recorded /// 0033209 // tumor necrosis factor-mediated signaling pathway // not recorded /// 0043000 // Golgi to plasma membrane CFTR protein transport // not recorded /// 0043066 // negative regulation of apoptosis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005815 // microtubule organizing center // not recorded /// 0005882 // intermediate filament // not recorded /// 0005882 // intermediate filament // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0034451 // centriolar satellite // not recorded /// 0045095 // keratin filament // inferred from direct assay /// 0045095 // keratin filament // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388156_at AW526098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526098 /DB_XREF=gi:7168483 /DB_XREF=UI-R-BO1-aiz-b-12-0-UI.s1 /CLONE=UI-R-BO1-aiz-b-12-0-UI /FEA=mRNA /CNT=9 /TID=Rn.16983.1 /TIER=Stack /STK=6 /UG=Rn.16983 /LL=29322 /UG_GENE=Plcb3 /UG_TITLE=phospholipase C, beta 3 AW526098 phospholipase C, beta 3 (phosphatidylinositol-specific) Plcb3 29322 NM_033350 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0009395 // phospholipid catabolic process // inferred from direct assay /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // non-traceable author statement 0005626 // insoluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from direct assay 0004435 // phosphoinositide phospholipase C activity // inferred from electronic annotation /// 0004435 // phosphoinositide phospholipase C activity // inferred from direct assay /// 0004629 // phospholipase C activity // traceable author statement /// 0004629 // phospholipase C activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // non-traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1388157_at BE111706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111706 /DB_XREF=gi:8503811 /DB_XREF=UI-R-BJ1-avv-h-02-0-UI.s1 /CLONE=UI-R-BJ1-avv-h-02-0-UI /FEA=mRNA /CNT=111 /TID=Rn.9560.1 /TIER=Stack /STK=93 /UG=Rn.9560 /LL=25603 /UG_GENE=Macs /UG_TITLE=Myristoylated alanine-rich protein kinase C substrate BE111706 myristoylated alanine rich protein kinase C substrate Marcks 25603 XM_002728965 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0042585 // germinal vesicle // inferred from electronic annotation /// 0042585 // germinal vesicle // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005080 // protein kinase C binding // inferred from electronic annotation /// 0005080 // protein kinase C binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation 1388158_at BG057565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG057565 /DB_XREF=gi:12523182 /DB_XREF=nag14g06.x1 /CLONE=IMAGE:4176203 /FEA=mRNA /CNT=44 /TID=Rn.3516.1 /TIER=Stack /STK=28 /UG=Rn.3516 /LL=114612 /UG_GENE=Bat1 /UG_TITLE=HLA-B associated transcript 1 BG057565 HLA-B associated transcript 1 Bat1 114612 NM_133300 0000245 // spliceosome assembly // not recorded /// 0000398 // nuclear mRNA splicing, via spliceosome // not recorded /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0010501 // RNA secondary structure unwinding // not recorded /// 0046784 // intronless viral mRNA export from host nucleus // not recorded /// 0051028 // mRNA transport // inferred from electronic annotation 0000346 // transcription export complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded /// 0005687 // U4 snRNP // not recorded /// 0005688 // U6 snRNP // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004004 // ATP-dependent RNA helicase activity // not recorded /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008186 // RNA-dependent ATPase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017070 // U6 snRNA binding // not recorded /// 0030621 // U4 snRNA binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0043008 // ATP-dependent protein binding // not recorded 1388159_at AA849795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849795 /DB_XREF=gi:2937335 /DB_XREF=EST192562 /CLONE=RMUAI93 /FEA=mRNA /CNT=70 /TID=Rn.25727.1 /TIER=Stack /STK=18 /UG=Rn.25727 /UG_TITLE=Rattus norvegicus CDK110 mRNA AA849795 cytochrome b CYTB 26192 0001666 // response to hypoxia // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from expression pattern /// 0009408 // response to heat // inferred from expression pattern /// 0009636 // response to toxin // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0015992 // proton transport // inferred from mutant phenotype /// 0022900 // electron transport chain // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from expression pattern /// 0033590 // response to cobalamin // inferred from expression pattern /// 0033762 // response to glucagon stimulus // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0042538 // hyperosmotic salinity response // inferred from mutant phenotype /// 0045471 // response to ethanol // inferred from expression pattern /// 0046686 // response to cadmium ion // inferred from direct assay /// 0046688 // response to copper ion // inferred from expression pattern /// 0046689 // response to mercury ion // inferred from mutant phenotype /// 0051592 // response to calcium ion // inferred from direct assay /// 0055093 // response to hyperoxia // inferred from expression pattern 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0070469 // respiratory chain // inferred from electronic annotation 0009055 // electron carrier activity // inferred from mutant phenotype /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1388160_a_at AI171793 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171793 /DB_XREF=gi:3711833 /DB_XREF=EST217775 /CLONE=RMUBQ77 /FEA=EST /CNT=13 /TID=Rn.1093.2 /TIER=Stack /STK=10 /UG=Rn.1093 /LL=94173 /UG_GENE=IDH3B /UG_TITLE=NAD+-specific isocitrate dehydrogenase b subunit AI171793 isocitrate dehydrogenase 3 (NAD+) beta Idh3B 94173 NM_053581 0006099 // tricarboxylic acid cycle // inferred from direct assay /// 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006102 // isocitrate metabolic process // inferred from direct assay /// 0006103 // 2-oxoglutarate metabolic process // inferred from direct assay /// 0006734 // NADH metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005962 // mitochondrial isocitrate dehydrogenase complex (NAD+) // inferred by curator 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004449 // isocitrate dehydrogenase (NAD+) activity // inferred from direct assay /// 0004449 // isocitrate dehydrogenase (NAD+) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation 1388161_at BI300565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300565 /DB_XREF=gi:14976845 /DB_XREF=UI-R-CV2-cim-e-01-0-UI.s1 /CLONE=UI-R-CV2-cim-e-01-0-UI /FEA=mRNA /CNT=11 /TID=Rn.42924.1 /TIER=ConsEnd /STK=0 /UG=Rn.42924 /LL=29650 /UG_GENE=Adam10 /UG_TITLE=A disintegrin and metalloprotease domain (ADAM) 10 BI300565 ADAM metallopeptidase domain 10 Adam10 29650 XM_001054737 /// XM_217197 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006508 // proteolysis // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0006509 // membrane protein ectodomain proteolysis // inferred from sequence or structural similarity /// 0007162 // negative regulation of cell adhesion // not recorded /// 0007162 // negative regulation of cell adhesion // inferred from sequence or structural similarity /// 0007219 // Notch signaling pathway // not recorded /// 0007219 // Notch signaling pathway // inferred from sequence or structural similarity /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0010820 // positive regulation of T cell chemotaxis // not recorded /// 0030307 // positive regulation of cell growth // not recorded /// 0030335 // positive regulation of cell migration // not recorded /// 0034612 // response to tumor necrosis factor // not recorded /// 0042117 // monocyte activation // not recorded /// 0043526 // neuroprotection // inferred from expression pattern /// 0045670 // regulation of osteoclast differentiation // non-traceable author statement /// 0051088 // PMA-inducible membrane protein ectodomain proteolysis // not recorded /// 0051089 // constitutive protein ectodomain proteolysis // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005798 // Golgi-associated vesicle // not recorded /// 0005798 // Golgi-associated vesicle // inferred from sequence or structural similarity /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0014069 // postsynaptic density // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004175 // endopeptidase activity // not recorded /// 0004222 // metalloendopeptidase activity // inferred from direct assay /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // not recorded /// 0008237 // metallopeptidase activity // inferred from sequence or structural similarity /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1388162_a_at AI547447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547447 /DB_XREF=gi:4464935 /DB_XREF=UI-R-C3-sl-a-06-0-UI.s1 /CLONE=UI-R-C3-sl-a-06-0-UI /FEA=mRNA /CNT=8 /TID=Rn.9885.2 /TIER=Stack /STK=7 /UG=Rn.9885 /LL=117101 /UG_GENE=Kcnc3 /UG_TITLE=potassium voltage gated channel, Shaw-related subfamily, member 3 AI547447 potassium voltage gated channel, Shaw-related subfamily, member 3 Kcnc3 117101 NM_053997 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1388163_at AI012445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012445 /DB_XREF=gi:3226277 /DB_XREF=EST206896 /CLONE=RPLAX34 /FEA=mRNA /CNT=49 /TID=Rn.3746.1 /TIER=Stack /STK=6 /UG=Rn.3746 /LL=25176 /UG_GENE=Slc25a5 /UG_TITLE=Solute carrier family 25, member 5 (adenine nucleotid translocator 2, fibroblast isoform (ATP-ADP carrier protein)) AI012445 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 Slc25a5 25176 NM_057102 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded /// 0071817 // MMXD complex // inferred from sequence or structural similarity 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1388164_at AF029241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF029241.1 /DB_XREF=gi:3150055 /GEN=RT1.S3 /FEA=mRNA /CNT=17 /TID=Rn.40130.1 /TIER=ConsEnd /STK=5 /UG=Rn.40130 /DEF=Rattus norvegicus MHC class Ib RT1.S3 (RT1.S3) mRNA, partial cds. /PROD=MHC class Ib RT1.S3 AF029241 RT1 class Ib, locus S3 RT1-S3 294228 NM_001008886 0001916 // positive regulation of T cell mediated cytotoxicity // not recorded /// 0002489 // antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 1388165_at X53232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X53232.1 /DB_XREF=gi:56951 /FEA=mRNA /CNT=8 /TID=Rn.6996.1 /TIER=ConsEnd /STK=5 /UG=Rn.6996 /UG_TITLE=Rat mRNA for preoptic regulatory factor-2 (PORF-2) /DEF=Rat mRNA for preoptic regulatory factor-2 (PORF-2). X53232 preoptic regulatory factor-2 Porf-2 500901 NM_173122 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1388166_at AI411693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411693 /DB_XREF=gi:4255197 /DB_XREF=EST239987 /CLONE=ROVEM18 /FEA=mRNA /CNT=15 /TID=Rn.4149.1 /TIER=ConsEnd /STK=4 /UG=Rn.4149 /UG_TITLE=R.norvegicus mRNA for Ig rearranged mu-chain C region, exons 2-4 AI411693 immunoglobulin heavy chain 6 /// similar to single chain Fv antibody fragment scFv 7-10A Igh-6 /// LOC314509 299357 /// 314509 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0002455 // humoral immune response mediated by circulating immunoglobulin // inferred from electronic annotation /// 0016064 // immunoglobulin mediated immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0045022 // early endosome to late endosome transport // inferred from electronic annotation /// 0045807 // positive regulation of endocytosis // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050853 // B cell receptor signaling pathway // inferred from electronic annotation /// 0050871 // positive regulation of B cell activation // inferred from electronic annotation 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0019815 // B cell receptor complex // inferred from electronic annotation /// 0042571 // immunoglobulin complex, circulating // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003823 // antigen binding // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1388167_at BE099050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099050 /DB_XREF=gi:8490926 /DB_XREF=UI-R-BJ1-atf-g-06-0-UI.s1 /CLONE=UI-R-BJ1-atf-g-06-0-UI /FEA=mRNA /CNT=18 /TID=Rn.9909.1 /TIER=ConsEnd /STK=4 /UG=Rn.9909 /LL=29227 /UG_GENE=Nfib /UG_TITLE=nuclear factor IB BE099050 nuclear factor I/B Nfib 29227 NM_031566 0006260 // DNA replication // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007608 // sensory perception of smell // non-traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016481 // negative regulation of transcription // traceable author statement /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0030902 // hindbrain development // inferred from electronic annotation /// 0030902 // hindbrain development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded 1388168_a_at L19107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L19107.1 /DB_XREF=gi:310140 /FEA=mRNA /CNT=1 /TID=Rn.12732.6 /TIER=ConsEnd /STK=0 /UG=Rn.12732 /LL=25022 /UG_GENE=Fgfr2 /DEF=Rat (clone R2(B3B)) heparin-binding fibroblast growth factor receptor 2 (extracellular domain) mRNA, partial cds. /PROD=heparin-binding fibroblast growth factorreceptor 2 L19107 fibroblast growth factor receptor 2 Fgfr2 25022 NM_001109892 /// NM_001109893 /// NM_001109894 /// NM_001109895 /// NM_001109896 /// NM_012712 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001837 // epithelial to mesenchymal transition // inferred from direct assay /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0003148 // outflow tract septum morphogenesis // not recorded /// 0003148 // outflow tract septum morphogenesis // inferred from electronic annotation /// 0003149 // membranous septum morphogenesis // not recorded /// 0003149 // membranous septum morphogenesis // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from mutant phenotype /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0008589 // regulation of smoothened signaling pathway // not recorded /// 0008589 // regulation of smoothened signaling pathway // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009880 // embryonic pattern specification // not recorded /// 0009880 // embryonic pattern specification // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010453 // regulation of cell fate commitment // not recorded /// 0010453 // regulation of cell fate commitment // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // not recorded /// 0016331 // morphogenesis of embryonic epithelium // inferred from electronic annotation /// 0022612 // gland morphogenesis // not recorded /// 0022612 // gland morphogenesis // inferred from electronic annotation /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0030177 // positive regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030282 // bone mineralization // not recorded /// 0030282 // bone mineralization // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030901 // midbrain development // not recorded /// 0030901 // midbrain development // inferred from electronic annotation /// 0030916 // otic vesicle formation // not recorded /// 0030916 // otic vesicle formation // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // not recorded /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0032808 // lacrimal gland development // not recorded /// 0032808 // lacrimal gland development // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035265 // organ growth // not recorded /// 0035265 // organ growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040036 // regulation of fibroblast growth factor receptor signaling pathway // not recorded /// 0040036 // regulation of fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042476 // odontogenesis // not recorded /// 0042476 // odontogenesis // inferred from electronic annotation /// 0045165 // cell fate commitment // not recorded /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0048286 // lung alveolus development // not recorded /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048333 // mesodermal cell differentiation // inferred from expression pattern /// 0048557 // embryonic digestive tract morphogenesis // not recorded /// 0048557 // embryonic digestive tract morphogenesis // inferred from electronic annotation /// 0048562 // embryonic organ morphogenesis // not recorded /// 0048562 // embryonic organ morphogenesis // inferred from electronic annotation /// 0048565 // digestive tract development // not recorded /// 0048565 // digestive tract development // inferred from electronic annotation /// 0048568 // embryonic organ development // not recorded /// 0048568 // embryonic organ development // inferred from electronic annotation /// 0048608 // reproductive structure development // not recorded /// 0048608 // reproductive structure development // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0048730 // epidermis morphogenesis // not recorded /// 0048730 // epidermis morphogenesis // inferred from electronic annotation /// 0048755 // branching morphogenesis of a nerve // not recorded /// 0048755 // branching morphogenesis of a nerve // inferred from electronic annotation /// 0048762 // mesenchymal cell differentiation // not recorded /// 0048762 // mesenchymal cell differentiation // inferred from electronic annotation /// 0050673 // epithelial cell proliferation // not recorded /// 0050673 // epithelial cell proliferation // inferred from electronic annotation /// 0050678 // regulation of epithelial cell proliferation // not recorded /// 0050678 // regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // inferred from direct assay /// 0051150 // regulation of smooth muscle cell differentiation // not recorded /// 0051150 // regulation of smooth muscle cell differentiation // inferred from electronic annotation /// 0051781 // positive regulation of cell division // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0060045 // positive regulation of cardiac muscle cell proliferation // not recorded /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060174 // limb bud formation // not recorded /// 0060174 // limb bud formation // inferred from electronic annotation /// 0060348 // bone development // not recorded /// 0060348 // bone development // inferred from electronic annotation /// 0060349 // bone morphogenesis // not recorded /// 0060349 // bone morphogenesis // inferred from electronic annotation /// 0060442 // branching involved in prostate gland morphogenesis // not recorded /// 0060442 // branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // not recorded /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060449 // bud elongation involved in lung branching // not recorded /// 0060449 // bud elongation involved in lung branching // inferred from electronic annotation /// 0060463 // lung lobe morphogenesis // not recorded /// 0060463 // lung lobe morphogenesis // inferred from electronic annotation /// 0060484 // lung-associated mesenchyme development // not recorded /// 0060484 // lung-associated mesenchyme development // inferred from electronic annotation /// 0060501 // positive regulation of epithelial cell proliferation involved in lung morphogenesis // not recorded /// 0060501 // positive regulation of epithelial cell proliferation involved in lung morphogenesis // inferred from electronic annotation /// 0060512 // prostate gland morphogenesis // not recorded /// 0060512 // prostate gland morphogenesis // inferred from electronic annotation /// 0060523 // prostate epithelial cord elongation // not recorded /// 0060523 // prostate epithelial cord elongation // inferred from electronic annotation /// 0060527 // prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis // not recorded /// 0060527 // prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis // inferred from electronic annotation /// 0060529 // squamous basal epithelial stem cell differentiation involved in prostate gland acinus development // not recorded /// 0060529 // squamous basal epithelial stem cell differentiation involved in prostate gland acinus development // inferred from electronic annotation /// 0060595 // fibroblast growth factor receptor signaling pathway involved in mammary gland specification // not recorded /// 0060595 // fibroblast growth factor receptor signaling pathway involved in mammary gland specification // inferred from electronic annotation /// 0060601 // lateral sprouting from an epithelium // not recorded /// 0060601 // lateral sprouting from an epithelium // inferred from electronic annotation /// 0060615 // mammary gland bud formation // not recorded /// 0060615 // mammary gland bud formation // inferred from electronic annotation /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // not recorded /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060667 // branch elongation involved in salivary gland morphogenesis // not recorded /// 0060667 // branch elongation involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060670 // branching involved in embryonic placenta morphogenesis // not recorded /// 0060670 // branching involved in embryonic placenta morphogenesis // inferred from electronic annotation /// 0060687 // regulation of branching involved in prostate gland morphogenesis // not recorded /// 0060687 // regulation of branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0060688 // regulation of morphogenesis of a branching structure // not recorded /// 0060688 // regulation of morphogenesis of a branching structure // inferred from electronic annotation /// 0060915 // mesenchymal cell differentiation involved in lung development // not recorded /// 0060915 // mesenchymal cell differentiation involved in lung development // inferred from electronic annotation /// 0060916 // mesenchymal cell proliferation involved in lung development // not recorded /// 0060916 // mesenchymal cell proliferation involved in lung development // inferred from electronic annotation /// 0070372 // regulation of ERK1 and ERK2 cascade // not recorded /// 0070372 // regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0071445 // cellular response to protein stimulus // not recorded /// 0071445 // cellular response to protein stimulus // inferred from electronic annotation /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0005938 // cell cortex // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005007 // fibroblast growth factor receptor activity // inferred from electronic annotation /// 0005007 // fibroblast growth factor receptor activity // inferred from physical interaction /// 0005007 // fibroblast growth factor receptor activity // not recorded /// 0005007 // fibroblast growth factor receptor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // inferred from physical interaction /// 0017134 // fibroblast growth factor binding // not recorded /// 0017134 // fibroblast growth factor binding // inferred from electronic annotation /// 0048602 // fibroblast growth factor 1 binding // inferred from physical interaction 1388169_at BE102096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102096 /DB_XREF=gi:8494195 /DB_XREF=UI-R-BT1-aqj-c-10-0-UI.s1 /CLONE=UI-R-BT1-aqj-c-10-0-UI /FEA=mRNA /CNT=10 /TID=Rn.19585.1 /TIER=ConsEnd /STK=4 /UG=Rn.19585 /LL=171120 /UG_GENE=LOC171120 /UG_TITLE=Pr2 protein BE102096 jumonji domain containing 1C Jmjd1c 171120 NM_001191719 /// XM_001080424 /// XM_228122 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388170_at BI285710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285710 /DB_XREF=gi:14939628 /DB_XREF=UI-R-CT0s-cas-f-08-0-UI.s1 /CLONE=UI-R-CT0s-cas-f-08-0-UI /FEA=mRNA /CNT=5 /TID=Rn.18338.1 /TIER=ConsEnd /STK=4 /UG=Rn.18338 /UG_TITLE=Rattus norvegicus vitamin A-deficient testicular protein 5 (Vad) mRNA, partial cds BI285710 potassium channel tetramerisation domain containing 1 Kctd1 291772 XM_001062225 /// XM_214617 0006350 // transcription // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1388171_at AW916118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916118 /DB_XREF=gi:8081836 /DB_XREF=EST347422 /CLONE=RGIDI27 /FEA=mRNA /CNT=10 /TID=Rn.10331.1 /TIER=ConsEnd /STK=3 /UG=Rn.10331 /LL=171150 /UG_GENE=Cdk7 /UG_TITLE=cyclin-dependent kinase 7 (MO15 homolog, Xenopus laevis, cdk-activating kinase) AW916118 cyclin-dependent kinase 7 Cdk7 171150 XM_001071127 /// XM_215467 0000718 // nucleotide-excision repair, DNA damage removal // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007126 // meiosis // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0051301 // cell division // inferred from electronic annotation 0000307 // cyclin-dependent protein kinase holoenzyme complex // traceable author statement /// 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005675 // holo TFIIH complex // not recorded /// 0005675 // holo TFIIH complex // inferred from sequence or structural similarity /// 0005675 // holo TFIIH complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005856 // cytoskeleton // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // inferred from direct assay /// 0004693 // cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0008094 // DNA-dependent ATPase activity // inferred from sequence or structural similarity /// 0008094 // DNA-dependent ATPase activity // inferred from electronic annotation /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // not recorded /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from sequence or structural similarity /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay 1388172_at Y09945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y09945.1 /DB_XREF=gi:3004481 /GEN=UST1r /FEA=mRNA /CNT=7 /TID=Rn.31066.1 /TIER=ConsEnd /STK=3 /UG=Rn.31066 /DEF=Rattus norvegicus mRNA for putative integral membrane transport protein (UST1r). /PROD=putative integral membrane transport protein Y09945 solute carrier family 22, member 25 Slc22a25 192273 NM_138908 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1388173_at AA957975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957975 /DB_XREF=gi:4277865 /DB_XREF=UI-R-E1-fz-h-10-0-UI.s1 /CLONE=UI-R-E1-fz-h-10-0-UI /FEA=mRNA /CNT=7 /TID=Rn.9458.1 /TIER=ConsEnd /STK=3 /UG=Rn.9458 /LL=116695 /UG_GENE=Kcnd1 /UG_TITLE=potassium voltage gated channel, Shal-related family, member 1 AA957975 potassium voltage-gated channel, Shal-related subfamily, member 1 Kcnd1 116695 NM_001105748 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1388174_at AF204873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF204873.1 /DB_XREF=gi:6578852 /FEA=mRNA /CNT=6 /TID=Rn.17219.1 /TIER=ConsEnd /STK=3 /UG=Rn.17219 /LL=116466 /UG_GENE=Wnt2b /DEF=Rattus norvegicus Wnt2b protein precursor, mRNA, partial cds. /PROD=Wnt2b protein precursor AF204873 wingless-type MMTV integration site family, member 2B Wnt2b 116466 NM_001191848 /// XM_001066411 /// XM_342308 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // not recorded /// 0007223 // Wnt receptor signaling pathway, calcium modulating pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0021871 // forebrain regionalization // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060492 // lung induction // inferred from electronic annotation /// 0060492 // lung induction // not recorded /// 0060638 // mesenchymal-epithelial cell signaling // inferred from electronic annotation /// 0060638 // mesenchymal-epithelial cell signaling // not recorded /// 0071425 // hemopoietic stem cell proliferation // not recorded /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // not recorded /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation 1388175_at Z30663 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Z30663.1 /DB_XREF=gi:521083 /FEA=mRNA /CNT=4 /TID=Rn.10339.1 /TIER=ConsEnd /STK=3 /UG=Rn.10339 /DEF=R.norvegicus mRNA for chloride channel (putative) 2313bp. /PROD=chloride channel (putative) Z30663 chloride channel Kb Clcnkb 79430 NM_173103 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from direct assay /// 0006821 // chloride transport // inferred from electronic annotation /// 0030321 // transepithelial chloride transport // non-traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005247 // voltage-gated chloride channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from direct assay /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388176_at AI717047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717047 /DB_XREF=gi:5034303 /DB_XREF=UI-R-Y0-acu-d-01-0-UI.s1 /CLONE=UI-R-Y0-acu-d-01-0-UI /FEA=mRNA /CNT=3 /TID=Rn.42517.1 /TIER=ConsEnd /STK=3 /UG=Rn.42517 /LL=114020 /UG_GENE=Cml5 /UG_TITLE=camello-like 5 AI717047 camello-like 5 Cml5 114020 NM_080884 0001702 // gastrulation with mouth forming second // non-traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007369 // gastrulation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0008080 // N-acetyltransferase activity // non-traceable author statement /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1388177_at X96589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X96589.1 /DB_XREF=gi:1235590 /FEA=mRNA /CNT=9 /TID=Rn.5444.1 /TIER=ConsEnd /STK=2 /UG=Rn.5444 /LL=25113 /UG_GENE=Den /DEF=R.norvegicus mRNA for dendrin. /PROD=dendrin X96589 dendrin Ddn 25113 NM_030993 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0030425 // dendrite // inferred from direct assay /// 0032591 // dendritic spine membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // traceable author statement /// 0043204 // perikaryon // inferred from electronic annotation 1388178_at AF322224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF322224.1 /DB_XREF=gi:11993660 /FEA=mRNA /CNT=8 /TID=Rn.46924.1 /TIER=ConsEnd /STK=2 /UG=Rn.46924 /LL=84584 /UG_GENE=Ncoa3 /DEF=Rattus norvegicus nuclear receptor coactivator AIB1 mRNA, partial cds. /PROD=nuclear receptor coactivator AIB1 AF322224 nuclear receptor coactivator 3 Ncoa3 84584 XM_001072953 /// XM_215947 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0033145 // positive regulation of steroid hormone receptor signaling pathway // inferred from mutant phenotype /// 0033148 // positive regulation of estrogen receptor signaling pathway // inferred from direct assay /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048589 // developmental growth // inferred from electronic annotation /// 0048589 // developmental growth // not recorded /// 0051091 // positive regulation of transcription factor activity // inferred from direct assay /// 0060068 // vagina development // inferred from electronic annotation /// 0060068 // vagina development // not recorded /// 0060744 // mammary gland branching involved in thelarche // inferred from electronic annotation /// 0060744 // mammary gland branching involved in thelarche // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016922 // ligand-dependent nuclear receptor binding // inferred from electronic annotation /// 0016922 // ligand-dependent nuclear receptor binding // not recorded /// 0030331 // estrogen receptor binding // inferred from physical interaction /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0035257 // nuclear hormone receptor binding // inferred from electronic annotation /// 0035257 // nuclear hormone receptor binding // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1388179_at AI548799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548799 /DB_XREF=gi:4466287 /DB_XREF=UI-R-C3-tr-g-08-0-UI.s1 /CLONE=UI-R-C3-tr-g-08-0-UI /FEA=mRNA /CNT=5 /TID=Rn.24240.1 /TIER=ConsEnd /STK=2 /UG=Rn.24240 /LL=25366 /UG_GENE=Acvr2b /UG_TITLE=Activine receptor 2b (transmembrane serine kinase) AI548799 activin A receptor, type IIB Acvr2b 25366 NM_031554 0001501 // skeletal system development // not recorded /// 0001702 // gastrulation with mouth forming second // not recorded /// 0001822 // kidney development // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // traceable author statement /// 0007165 // signal transduction // not recorded /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // not recorded /// 0007389 // pattern specification process // not recorded /// 0007498 // mesoderm development // not recorded /// 0007507 // heart development // not recorded /// 0009749 // response to glucose stimulus // not recorded /// 0009791 // post-embryonic development // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0019953 // sexual reproduction // non-traceable author statement /// 0030073 // insulin secretion // not recorded /// 0030324 // lung development // not recorded /// 0030501 // positive regulation of bone mineralization // not recorded /// 0030509 // BMP signaling pathway // not recorded /// 0031016 // pancreas development // not recorded /// 0032147 // activation of protein kinase activity // not recorded /// 0032924 // activin receptor signaling pathway // inferred from electronic annotation /// 0032927 // positive regulation of activin receptor signaling pathway // not recorded /// 0035265 // organ growth // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0048617 // embryonic foregut morphogenesis // not recorded /// 0048705 // skeletal system morphogenesis // not recorded /// 0060021 // palate development // not recorded 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // traceable author statement /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // inferred from electronic annotation /// 0004702 // receptor signaling protein serine/threonine kinase activity // inferred from electronic annotation /// 0004712 // protein serine/threonine/tyrosine kinase activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017002 // activin receptor activity // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048185 // activin binding // inferred from direct assay /// 0048185 // activin binding // not recorded /// 0048185 // activin binding // traceable author statement /// 0048186 // inhibin beta-A binding // inferred from direct assay /// 0048187 // inhibin beta-B binding // inferred from direct assay /// 0050431 // transforming growth factor beta binding // not recorded 1388180_at AI044239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044239 /DB_XREF=gi:3291142 /DB_XREF=UI-R-C1-kb-f-09-0-UI.s2 /CLONE=UI-R-C1-kb-f-09-0-UI /FEA=mRNA /CNT=7 /TID=Rn.10317.1 /TIER=ConsEnd /STK=2 /UG=Rn.10317 /UG_TITLE=R.norvegicus mRNA for cytosolic resiniferatoxin-binding protein AI044239 phosphorylated adaptor for RNA export Phax 286917 NM_173133 0000387 // spliceosomal snRNP assembly // not recorded /// 0006408 // snRNA export from nucleus // inferred from electronic annotation /// 0006408 // snRNA export from nucleus // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0015030 // Cajal body // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0015643 // toxin binding // inferred from physical interaction 1388181_at J00741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J00741.1 /DB_XREF=gi:204725 /FEA=mRNA /CNT=5 /TID=Rn.10956.1 /TIER=ConsEnd /STK=2 /UG=Rn.10956 /UG_TITLE=Rat ig delta heavy chain constant region and 3 ut, mrna /DEF=rat ig delta heavy chain constant region and 3 ut, mrna. J00741 immunoglobulin delta heavy chain constant region LOC641523 641523 0003823 // antigen binding // inferred from electronic annotation 1388182_at BE108911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108911 /DB_XREF=gi:8501016 /DB_XREF=UI-R-BS1-ayz-g-11-0-UI.s1 /CLONE=UI-R-BS1-ayz-g-11-0-UI /FEA=mRNA /CNT=5 /TID=Rn.38719.1 /TIER=ConsEnd /STK=2 /UG=Rn.38719 /UG_TITLE=Rattus norvegicus DNA primase small subunit mRNA, partial cds BE108911 DNA primase, p49 subunit Prim1 246327 NM_001008768 0006260 // DNA replication // non-traceable author statement /// 0006260 // DNA replication // inferred from electronic annotation /// 0006269 // DNA replication, synthesis of RNA primer // inferred from electronic annotation 0005658 // alpha DNA polymerase:primase complex // inferred from electronic annotation 0003896 // DNA primase activity // inferred from electronic annotation /// 0003896 // DNA primase activity // non-traceable author statement /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1388183_at J00710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J00710.1 /DB_XREF=gi:203305 /FEA=mRNA /CNT=4 /TID=Rn.10744.1 /TIER=ConsEnd /STK=2 /UG=Rn.10744 /UG_TITLE=Rat casein-alpha mrna /DEF=rat casein-alpha mrna. J00710 casein alpha s1 Csn1s1 24284 NM_138874 0006810 // transport // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // traceable author statement 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388184_at BM391649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391649 /DB_XREF=gi:18191702 /DB_XREF=UI-R-CN1-cjs-k-20-0-UI.s1 /CLONE=UI-R-CN1-cjs-k-20-0-UI /FEA=mRNA /CNT=3 /TID=Rn.48709.1 /TIER=ConsEnd /STK=2 /UG=Rn.48709 /LL=170818 /UG_GENE=Icmt /UG_TITLE=isoprenylcysteine carboxyl methyltransferase BM391649 isoprenylcysteine carboxyl methyltransferase Icmt 170818 NM_133310 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0006479 // protein methylation // not recorded /// 0006479 // protein methylation // inferred from electronic annotation /// 0006481 // C-terminal protein methylation // inferred from mutant phenotype /// 0006481 // C-terminal protein methylation // not recorded /// 0006481 // C-terminal protein methylation // inferred from electronic annotation /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0046498 // S-adenosylhomocysteine metabolic process // inferred from mutant phenotype /// 0046499 // S-adenosylmethioninamine metabolic process // inferred from mutant phenotype /// 0046578 // regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046578 // regulation of Ras protein signal transduction // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004671 // protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity // inferred from mutant phenotype /// 0004671 // protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity // not recorded /// 0004671 // protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity // inferred from electronic annotation /// 0008140 // cAMP response element binding protein binding // inferred from electronic annotation /// 0008140 // cAMP response element binding protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1388185_at AI178012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178012 /DB_XREF=gi:3728650 /DB_XREF=EST221669 /CLONE=RPLCJ92 /FEA=mRNA /CNT=13 /TID=Rn.55115.1 /TIER=ConsEnd /STK=1 /UG=Rn.55115 /LL=24708 /UG_GENE=Rb1 /UG_TITLE=Retinoblastoma 1 (including osteosarcoma) AI178012 retinoblastoma 1 Rb1 24708 NM_017045 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from sequence or structural similarity /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0007265 // Ras protein signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0043353 // enucleate erythrocyte differentiation // inferred from electronic annotation /// 0043353 // enucleate erythrocyte differentiation // not recorded /// 0043550 // regulation of lipid kinase activity // not recorded /// 0043550 // regulation of lipid kinase activity // inferred from sequence or structural similarity /// 0043550 // regulation of lipid kinase activity // inferred from electronic annotation /// 0045445 // myoblast differentiation // not recorded /// 0045445 // myoblast differentiation // inferred from sequence or structural similarity /// 0045445 // myoblast differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045651 // positive regulation of macrophage differentiation // inferred from electronic annotation /// 0045651 // positive regulation of macrophage differentiation // not recorded /// 0045786 // negative regulation of cell cycle // not recorded /// 0045786 // negative regulation of cell cycle // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0051146 // striated muscle cell differentiation // inferred from electronic annotation /// 0051146 // striated muscle cell differentiation // not recorded /// 0051301 // cell division // inferred from electronic annotation /// 0051301 // cell division // not recorded /// 0051726 // regulation of cell cycle // not recorded /// 0051726 // regulation of cell cycle // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005819 // spindle // inferred from electronic annotation /// 0005819 // spindle // not recorded /// 0016605 // PML body // not recorded /// 0016605 // PML body // inferred from sequence or structural similarity /// 0016605 // PML body // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from sequence or structural similarity /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0019900 // kinase binding // not recorded /// 0019900 // kinase binding // inferred from sequence or structural similarity /// 0019900 // kinase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0051219 // phosphoprotein binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // not recorded 1388186_at AI548979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548979 /DB_XREF=gi:4466467 /DB_XREF=UI-R-C3-tv-a-09-0-UI.s1 /CLONE=UI-R-C3-tv-a-09-0-UI /FEA=mRNA /CNT=8 /TID=Rn.9817.1 /TIER=ConsEnd /STK=1 /UG=Rn.9817 /UG_TITLE=Rat pancreatic cationic trypsinogen mRNA, comlete cds AI548979 protease, serine, 3 Prss3 286911 NM_173127 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0007586 // digestion // inferred from electronic annotation /// 0031638 // zymogen activation // not recorded /// 0043542 // endothelial cell migration // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // not recorded /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // not recorded /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388187_at BM384558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384558 /DB_XREF=gi:18184611 /DB_XREF=UI-R-DY0-ckl-c-05-0-UI.s1 /CLONE=UI-R-DY0-ckl-c-05-0-UI /FEA=mRNA /CNT=7 /TID=Rn.38966.1 /TIER=ConsEnd /STK=1 /UG=Rn.38966 /UG_TITLE=Rattus norvegicus Ca2+calmodulin-dependent protein kinase II, alpha subunit mRNA, 3 untranslated region BM384558 calcium/calmodulin-dependent protein kinase II alpha Camk2a 25400 NM_012920 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from direct assay /// 0046777 // protein autophosphorylation // not recorded /// 0046928 // regulation of neurotransmitter secretion // not recorded /// 0048168 // regulation of neuronal synaptic plasticity // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005954 // calcium- and calmodulin-dependent protein kinase complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0030666 // endocytic vesicle membrane // not recorded /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from direct assay /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0035254 // glutamate receptor binding // not recorded 1388188_at BF283070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283070 /DB_XREF=gi:11214140 /DB_XREF=EST447661 /CLONE=RGIDX11 /FEA=mRNA /CNT=7 /TID=Rn.53969.1 /TIER=ConsEnd /STK=1 /UG=Rn.53969 /LL=25429 /UG_GENE=Cyp7b1 /UG_TITLE=Cytochrom P450 BF283070 cytochrome P450, family 7, subfamily b, polypeptide 1 Cyp7b1 25429 NM_019138 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006699 // bile acid biosynthetic process // not recorded /// 0006699 // bile acid biosynthetic process // traceable author statement /// 0006699 // bile acid biosynthetic process // inferred from electronic annotation /// 0007613 // memory // inferred from direct assay /// 0007623 // circadian rhythm // inferred from direct assay /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // traceable author statement /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0033147 // negative regulation of estrogen receptor signaling pathway // inferred from electronic annotation /// 0033147 // negative regulation of estrogen receptor signaling pathway // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0051591 // response to cAMP // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060740 // prostate gland epithelium morphogenesis // inferred from electronic annotation /// 0060740 // prostate gland epithelium morphogenesis // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008396 // oxysterol 7-alpha-hydroxylase activity // not recorded /// 0008396 // oxysterol 7-alpha-hydroxylase activity // traceable author statement /// 0008396 // oxysterol 7-alpha-hydroxylase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0033783 // 25-hydroxycholesterol 7alpha-hydroxylase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388189_at AW522430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522430 /DB_XREF=gi:7164815 /DB_XREF=UI-R-BO0-ahv-d-01-0-UI.s1 /CLONE=UI-R-BO0-ahv-d-01-0-UI /FEA=mRNA /CNT=5 /TID=Rn.41715.1 /TIER=ConsEnd /STK=1 /UG=Rn.41715 /LL=24416 /UG_GENE=Grm3 /UG_TITLE=Glutamate receptor, metabotropic 3 AW522430 glutamate receptor, metabotropic 3 Grm3 24416 NM_001105712 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007196 // inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway // not recorded /// 0019233 // sensory perception of pain // traceable author statement /// 0050804 // regulation of synaptic transmission // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0014069 // postsynaptic density // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0042734 // presynaptic membrane // not recorded /// 0043197 // dendritic spine // inferred from electronic annotation /// 0043197 // dendritic spine // not recorded /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0045211 // postsynaptic membrane // not recorded 0001641 // group II metabotropic glutamate receptor activity // inferred from mutant phenotype /// 0001641 // group II metabotropic glutamate receptor activity // not recorded /// 0001641 // group II metabotropic glutamate receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005246 // calcium channel regulator activity // inferred from electronic annotation /// 0005246 // calcium channel regulator activity // not recorded 1388190_at BF396597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396597 /DB_XREF=gi:11381572 /DB_XREF=UI-R-BS2-bea-a-02-0-UI.s1 /CLONE=UI-R-BS2-bea-a-02-0-UI /FEA=mRNA /CNT=4 /TID=Rn.33815.1 /TIER=ConsEnd /STK=1 /UG=Rn.33815 /LL=54225 /UG_GENE=Apob /UG_TITLE=Apolipoprotein B BF396597 apolipoprotein B Apob 54225 NM_019287 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006629 // lipid metabolic process // inferred from direct assay /// 0006629 // lipid metabolic process // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006642 // triglyceride mobilization // inferred from electronic annotation /// 0006642 // triglyceride mobilization // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0009566 // fertilization // inferred from electronic annotation /// 0009566 // fertilization // not recorded /// 0009615 // response to virus // inferred from electronic annotation /// 0009615 // response to virus // not recorded /// 0009743 // response to carbohydrate stimulus // inferred from direct assay /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0010269 // response to selenium ion // inferred from expression pattern /// 0010744 // positive regulation of macrophage derived foam cell differentiation // inferred from electronic annotation /// 0010744 // positive regulation of macrophage derived foam cell differentiation // not recorded /// 0010884 // positive regulation of lipid storage // not recorded /// 0010884 // positive regulation of lipid storage // inferred from electronic annotation /// 0010886 // positive regulation of cholesterol storage // inferred from electronic annotation /// 0010886 // positive regulation of cholesterol storage // not recorded /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // not recorded /// 0019433 // triglyceride catabolic process // inferred from mutant phenotype /// 0019433 // triglyceride catabolic process // not recorded /// 0019433 // triglyceride catabolic process // inferred from electronic annotation /// 0030301 // cholesterol transport // not recorded /// 0030301 // cholesterol transport // inferred from electronic annotation /// 0030317 // sperm motility // inferred from electronic annotation /// 0030317 // sperm motility // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0034374 // low-density lipoprotein particle remodeling // inferred from electronic annotation /// 0034374 // low-density lipoprotein particle remodeling // not recorded /// 0034383 // low-density lipoprotein particle clearance // inferred from electronic annotation /// 0034383 // low-density lipoprotein particle clearance // not recorded /// 0042157 // lipoprotein metabolic process // not recorded /// 0042157 // lipoprotein metabolic process // inferred from electronic annotation /// 0042158 // lipoprotein biosynthetic process // inferred from electronic annotation /// 0042158 // lipoprotein biosynthetic process // not recorded /// 0042159 // lipoprotein catabolic process // inferred from electronic annotation /// 0042159 // lipoprotein catabolic process // not recorded /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0042953 // lipoprotein transport // inferred from electronic annotation /// 0042953 // lipoprotein transport // not recorded /// 0045540 // regulation of cholesterol biosynthetic process // inferred from electronic annotation /// 0045540 // regulation of cholesterol biosynthetic process // not recorded /// 0048844 // artery morphogenesis // inferred from electronic annotation /// 0048844 // artery morphogenesis // not recorded /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern /// 0071379 // cellular response to prostaglandin stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005788 // endoplasmic reticulum lumen // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0010008 // endosome membrane // not recorded /// 0012506 // vesicle membrane // inferred from direct assay /// 0030669 // clathrin-coated endocytic vesicle membrane // not recorded /// 0031904 // endosome lumen // not recorded /// 0031983 // vesicle lumen // inferred from direct assay /// 0034359 // mature chylomicron // inferred from electronic annotation /// 0034359 // mature chylomicron // not recorded /// 0034361 // very-low-density lipoprotein particle // inferred from direct assay /// 0034361 // very-low-density lipoprotein particle // not recorded /// 0034361 // very-low-density lipoprotein particle // inferred from electronic annotation /// 0034362 // low-density lipoprotein particle // inferred from electronic annotation /// 0034362 // low-density lipoprotein particle // not recorded /// 0034363 // intermediate-density lipoprotein particle // inferred from electronic annotation /// 0034363 // intermediate-density lipoprotein particle // not recorded /// 0042627 // chylomicron // not recorded /// 0042627 // chylomicron // inferred from electronic annotation 0005319 // lipid transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005543 // phospholipid binding // not recorded /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded /// 0008289 // lipid binding // inferred from mutant phenotype /// 0017127 // cholesterol transporter activity // inferred from electronic annotation /// 0017127 // cholesterol transporter activity // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0050750 // low-density lipoprotein receptor binding // inferred from electronic annotation /// 0050750 // low-density lipoprotein receptor binding // not recorded 1388191_at BG372661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372661 /DB_XREF=gi:13269198 /DB_XREF=UI-R-CV1-brs-h-08-0-UI.s1 /CLONE=UI-R-CV1-brs-h-08-0-UI /FEA=mRNA /CNT=4 /TID=Rn.10676.1 /TIER=ConsEnd /STK=1 /UG=Rn.10676 /LL=25111 /UG_GENE=Chrm4 /UG_TITLE=Cholinergic receptor, muscarin 4 BG372661 cholinergic receptor, muscarinic 4 Chrm4 25111 NM_031547 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007197 // inhibition of adenylate cyclase activity by muscarinic acetylcholine receptor signaling pathway // inferred from electronic annotation /// 0007197 // inhibition of adenylate cyclase activity by muscarinic acetylcholine receptor signaling pathway // not recorded /// 0007268 // synaptic transmission // not recorded /// 0010033 // response to organic substance // inferred from expression pattern 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0032279 // asymmetric synapse // inferred from direct assay /// 0042383 // sarcolemma // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay /// 0044424 // intracellular part // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004981 // muscarinic acetylcholine receptor activity // not recorded /// 0004981 // muscarinic acetylcholine receptor activity // traceable author statement /// 0004981 // muscarinic acetylcholine receptor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction 1388192_at AI711028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711028 /DB_XREF=gi:5000804 /DB_XREF=UI-R-AE1-zi-c-03-0-UI.s1 /CLONE=UI-R-AE1-zi-c-03-0-UI /FEA=mRNA /CNT=3 /TID=Rn.54470.1 /TIER=ConsEnd /STK=1 /UG=Rn.54470 /LL=65026 /UG_GENE=X2cr1 /UG_TITLE=pituitary tumor X2CR1 protein AI711028 RWD domain containing 3 Rwdd3 65026 NM_001128152 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1388193_at AI028905 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI028905 /DB_XREF=gi:4294873 /DB_XREF=UI-R-C0-il-c-06-0-UI.s1 /CLONE=UI-R-C0-il-c-06-0-UI /FEA=mRNA /CNT=3 /TID=Rn.50506.1 /TIER=ConsEnd /STK=1 /UG=Rn.50506 /UG_TITLE=Rattus norvegicus HIP1 protein mRNA, partial cds AI028905 huntingtin interacting protein 1 Hip1 192154 NM_001100475 0006897 // endocytosis // not recorded /// 0006897 // endocytosis // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from electronic annotation /// 0048260 // positive regulation of receptor-mediated endocytosis // not recorded /// 0048268 // clathrin coat assembly // inferred from direct assay /// 0048268 // clathrin coat assembly // not recorded /// 0048268 // clathrin coat assembly // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016021 // integral to membrane // traceable author statement /// 0030118 // clathrin coat // traceable author statement /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030276 // clathrin binding // inferred from direct assay /// 0030276 // clathrin binding // not recorded /// 0030276 // clathrin binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // not recorded 1388194_at BI295900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295900 /DB_XREF=gi:14959809 /DB_XREF=UI-R-DK0-cfc-a-10-0-UI.s1 /CLONE=UI-R-DK0-cfc-a-10-0-UI /FEA=mRNA /CNT=25 /TID=Rn.15413.1 /TIER=ConsEnd /STK=0 /UG=Rn.15413 /LL=81654 /UG_GENE=Dlat /UG_TITLE=dihydrolipoamide acetyltransferase BI295900 dihydrolipoamide S-acetyltransferase Dlat 81654 NM_031025 0006086 // acetyl-CoA biosynthetic process from pyruvate // inferred from direct assay /// 0006090 // pyruvate metabolic process // inferred from electronic annotation /// 0006096 // glycolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010510 // regulation of acetyl-CoA biosynthetic process from pyruvate // not recorded /// 0030431 // sleep // inferred from expression pattern 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0045254 // pyruvate dehydrogenase complex // inferred from direct assay /// 0045254 // pyruvate dehydrogenase complex // traceable author statement /// 0045254 // pyruvate dehydrogenase complex // inferred from electronic annotation 0000166 // nucleotide binding // traceable author statement /// 0004742 // dihydrolipoyllysine-residue acetyltransferase activity // inferred from direct assay /// 0004742 // dihydrolipoyllysine-residue acetyltransferase activity // traceable author statement /// 0004742 // dihydrolipoyllysine-residue acetyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1388195_at AW140475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW140475 /DB_XREF=gi:6160211 /DB_XREF=EST290451 /CLONE=RGIAI62 /FEA=mRNA /CNT=11 /TID=Rn.30004.3 /TIER=ConsEnd /STK=0 /UG=Rn.30004 /LL=29428 /UG_GENE=Cugbp2 /UG_TITLE=CUG triplet repeat, RNA-binding protein 2 AW140475 1388196_at BM383722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383722 /DB_XREF=gi:18183775 /DB_XREF=UI-R-DM1-ckb-i-21-0-UI.s1 /CLONE=UI-R-DM1-ckb-i-21-0-UI /FEA=mRNA /CNT=10 /TID=Rn.44432.1 /TIER=ConsEnd /STK=0 /UG=Rn.44432 /LL=58823 /UG_GENE=Nckap1 /UG_TITLE=NCK-associated protein 1 BM383722 NCK-associated protein 1 Nckap1 58823 NM_031618 0001701 // in utero embryonic development // not recorded /// 0001756 // somitogenesis // not recorded /// 0001843 // neural tube closure // not recorded /// 0007354 // zygotic determination of anterior/posterior axis, embryo // not recorded /// 0007492 // endoderm development // not recorded /// 0008078 // mesodermal cell migration // not recorded /// 0010172 // embryonic body morphogenesis // not recorded /// 0030032 // lamellipodium assembly // not recorded /// 0030903 // notochord development // not recorded /// 0030950 // establishment or maintenance of actin cytoskeleton polarity // not recorded /// 0032880 // regulation of protein localization // not recorded /// 0035050 // embryonic heart tube development // not recorded /// 0042074 // cell migration involved in gastrulation // not recorded /// 0045175 // basal protein localization // not recorded /// 0045176 // apical protein localization // not recorded /// 0048339 // paraxial mesoderm development // not recorded /// 0048340 // paraxial mesoderm morphogenesis // not recorded /// 0048570 // notochord morphogenesis // not recorded /// 0048617 // embryonic foregut morphogenesis // not recorded /// 0050821 // protein stabilization // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0031258 // lamellipodium membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded 1388197_at AA900970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900970 /DB_XREF=gi:4233466 /DB_XREF=UI-R-E0-dj-b-05-0-UI.s1 /CLONE=UI-R-E0-dj-b-05-0-UI /FEA=mRNA /CNT=7 /TID=Rn.11256.1 /TIER=ConsEnd /STK=0 /UG=Rn.11256 /LL=24453 /UG_GENE=Hoxa4 /UG_TITLE=Homeobox gene A4 AA900970 homeo box A4 Hoxa4 24453 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007275 // multicellular organismal development // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1388198_at AF000899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF000899.1 /DB_XREF=gi:3941281 /FEA=mRNA /CNT=9 /TID=Rn.34138.1 /TIER=ConsEnd /STK=0 /UG=Rn.34138 /UG_TITLE=Rattus norvegicus p58p45 mRNA, alternatively spliced form, clone H6, 3 end /DEF=Rattus norvegicus p58p45 mRNA, alternatively spliced form, clone H6, 3 end. AF000899 nucleoporin like 1 Nupl1 245922 NM_139091 0006810 // transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005643 // nuclear pore // inferred from direct assay /// 0005643 // nuclear pore // non-traceable author statement /// 0005643 // nuclear pore // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0005487 // nucleocytoplasmic transporter activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1388199_at BG376410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376410 /DB_XREF=gi:13300882 /DB_XREF=UI-R-CU0-but-b-09-0-UI.s1 /CLONE=UI-R-CU0-but-b-09-0-UI /FEA=mRNA /CNT=7 /TID=Rn.82717.1 /TIER=ConsEnd /STK=0 /UG=Rn.82717 /LL=171577 /UG_GENE=Tacstd1 /UG_TITLE=tumor-associated calcium signal transducer 1 BG376410 epithelial cell adhesion molecule Epcam 171577 NM_138541 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity 0005886 // plasma membrane // inferred from direct assay /// 0005923 // tight junction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016324 // apical plasma membrane // not recorded /// 0016328 // lateral plasma membrane // inferred from direct assay 1388200_at BF419995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419995 /DB_XREF=gi:11407984 /DB_XREF=UI-R-BJ2-bpi-f-12-0-UI.s1 /CLONE=UI-R-BJ2-bpi-f-12-0-UI /FEA=mRNA /CNT=8 /TID=Rn.37176.1 /TIER=ConsEnd /STK=0 /UG=Rn.37176 /UG_TITLE=Rat heart myosin light chain 2 (MLC2) mRNA, 3 end BF419995 myosin, light polypeptide 2, regulatory, cardiac, slow Myl2 363925 NM_001035252 0060048 // cardiac muscle contraction // inferred from direct assay /// 0060048 // cardiac muscle contraction // inferred from mutant phenotype 0016459 // myosin complex // inferred from electronic annotation /// 0030016 // myofibril // inferred from direct assay /// 0043292 // contractile fiber // inferred from direct assay 0003774 // motor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1388201_at AW141680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141680 /DB_XREF=gi:6161503 /DB_XREF=EST291759 /CLONE=RGICD02 /FEA=mRNA /CNT=7 /TID=Rn.40476.1 /TIER=ConsEnd /STK=0 /UG=Rn.40476 /LL=25644 /UG_GENE=Bmp6 /UG_TITLE=Bone morphogenetic protein 6 AW141680 bone morphogenetic protein 6 Bmp6 25644 NM_013107 0001503 // ossification // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from expression pattern /// 0001649 // osteoblast differentiation // not recorded /// 0001654 // eye development // not recorded /// 0001822 // kidney development // not recorded /// 0001958 // endochondral ossification // not recorded /// 0006954 // inflammatory response // not recorded /// 0006955 // immune response // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from sequence or structural similarity /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // not recorded /// 0030509 // BMP signaling pathway // not recorded /// 0030539 // male genitalia development // not recorded /// 0032349 // positive regulation of aldosterone biosynthetic process // not recorded /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0040007 // growth // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // traceable author statement /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from mutant phenotype /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0051216 // cartilage development // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0060395 // SMAD protein signal transduction // not recorded /// 0060395 // SMAD protein signal transduction // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0031988 // membrane-bounded vesicle // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0070700 // BMP receptor binding // not recorded 1388202_at BI395698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI395698 /DB_XREF=gi:15091175 /DB_XREF=EST531569 /CLONE=RGICE58 /FEA=mRNA /CNT=5 /TID=Rn.39743.7 /TIER=ConsEnd /STK=0 /UG=Rn.39743 /LL=24737 /UG_GENE=RT1Aw2 /UG_TITLE=RT1 class Ib gene BI395698 RT1 class Ib, locus EC2 RT1-EC2 24737 NM_012645 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 1388203_x_at BI395698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI395698 /DB_XREF=gi:15091175 /DB_XREF=EST531569 /CLONE=RGICE58 /FEA=mRNA /CNT=5 /TID=Rn.39743.7 /TIER=ConsEnd /STK=0 /UG=Rn.39743 /LL=24737 /UG_GENE=RT1Aw2 /UG_TITLE=RT1 class Ib gene BI395698 RT1 class I, locus CE11-like /// RT1 class I, locus A3 /// RT1 class I, locus CE10 /// RT1 class I, locus CE2 /// RT1 class Ib, locus EC2 LOC100364500 /// RT1-A3 /// RT1-CE10 /// RT1-CE2 /// RT1-EC2 100364500 /// 24737 /// 309627 /// 414779 /// 414792 NM_001008830 /// NM_001008833 /// NM_001008840 /// NM_012645 /// XM_002727379 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from direct assay /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0002517 // T cell tolerance induction // inferred from mutant phenotype /// 0002657 // positive regulation of tolerance induction to nonself antigen // inferred from mutant phenotype /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0045953 // negative regulation of natural killer cell mediated cytotoxicity // inferred from mutant phenotype 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0030881 // beta-2-microglobulin binding // inferred from physical interaction /// 0042277 // peptide binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1388204_at M60616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M60616.1 /DB_XREF=gi:203498 /GEN=UMRCase /FEA=mRNA /CNT=8 /TID=Rn.10997.1 /TIER=ConsEnd /STK=0 /UG=Rn.10997 /LL=171052 /DEF=Rat collagenase (UMRCase) mRNA, 3 end. /PROD=collagenase M60616 matrix metallopeptidase 13 Mmp13 171052 NM_133530 0001503 // ossification // inferred from expression pattern /// 0001666 // response to hypoxia // inferred from expression pattern /// 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0030282 // bone mineralization // inferred from electronic annotation /// 0030282 // bone mineralization // not recorded /// 0030574 // collagen catabolic process // inferred from electronic annotation /// 0030574 // collagen catabolic process // not recorded /// 0031623 // receptor internalization // inferred from genetic interaction /// 0035116 // embryonic hindlimb morphogenesis // inferred from expression pattern /// 0043171 // peptide catabolic process // inferred from direct assay /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0051216 // cartilage development // inferred from electronic annotation /// 0051216 // cartilage development // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005583 // fibrillar collagen // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0046581 // intercellular canaliculus // inferred from direct assay 0001968 // fibronectin binding // inferred from physical interaction /// 0004222 // metalloendopeptidase activity // inferred from direct assay /// 0004222 // metalloendopeptidase activity // not recorded /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from direct assay /// 0050750 // low-density lipoprotein receptor binding // inferred from physical interaction 1388205_at BI301318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301318 /DB_XREF=gi:14977598 /DB_XREF=UI-R-DL0-cio-h-07-0-UI.s1 /CLONE=UI-R-DL0-cio-h-07-0-UI /FEA=mRNA /CNT=3 /TID=Rn.32073.1 /TIER=ConsEnd /STK=0 /UG=Rn.32073 /UG_TITLE=Rat brain-specific identifier sequence RNA, clone p1b224 BI301318 1388206_a_at K01677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:K01677.1 /DB_XREF=gi:206764 /FEA=mRNA /CNT=3 /TID=Rn.40123.2 /TIER=ConsEnd /STK=0 /UG=Rn.40123 /LL=56783 /UG_GENE=Eif5 /UG_TITLE=eukaryotic initiation factor 5 (eIF-5) /DEF=Rat brain-specific identifier sequence (ID) clone p1B337. K01677 eukaryotic translation initiation factor 5 Eif5 56783 NM_020075 0006412 // translation // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation /// 0016070 // RNA metabolic process // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1388207_at BM384711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384711 /DB_XREF=gi:18184764 /DB_XREF=UI-R-CN1-cjl-d-07-0-UI.s2 /CLONE=UI-R-CN1-cjl-d-07-0-UI /FEA=mRNA /CNT=2 /TID=Rn.81196.1 /TIER=ConsEnd /STK=0 /UG=Rn.81196 /UG_TITLE=Rat proline-rich protein mRNA, 3 end BM384711 proline rich protein 2-like 1 Prp2l1 287750 XM_001081550 /// XM_002727827 1388208_a_at AJ299017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ299017.1 /DB_XREF=gi:10638069 /GEN=Ret /FEA=mRNA /CNT=2 /TID=Rn.44178.2 /TIER=ConsEnd /STK=0 /UG=Rn.44178 /LL=24716 /DEF=Rattus norvegicus mRNA for receptor tyrosine kinase (Ret gene), isoform RET9. /PROD=receptor tyrosine kinase AJ299017 ret proto-oncogene Ret 24716 NM_001110099 /// NM_012643 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000165 // MAPKKK cascade // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0001838 // embryonic epithelial tube formation // inferred from electronic annotation /// 0001838 // embryonic epithelial tube formation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0014042 // positive regulation of neuron maturation // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0042551 // neuron maturation // not recorded /// 0042551 // neuron maturation // inferred from electronic annotation /// 0048484 // enteric nervous system development // inferred from electronic annotation /// 0048484 // enteric nervous system development // not recorded /// 0060041 // retina development in camera-type eye // inferred from expression pattern /// 0060384 // innervation // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1388209_at AF092091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF092091.1 /DB_XREF=gi:3851159 /FEA=mRNA /CNT=2 /TID=Rn.30052.1 /TIER=ConsEnd /STK=0 /UG=Rn.30052 /DEF=Rattus norvegicus cp431 mRNA, partial cds. /PROD=cp431 AF092091 testis specific 10 Tsga10 252923 NM_001030022 0030031 // cell projection assembly // inferred from electronic annotation /// 0030031 // cell projection assembly // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0009434 // microtubule-based flagellum // inferred from electronic annotation /// 0009434 // microtubule-based flagellum // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded 0005198 // structural molecule activity // inferred from direct assay 1388210_at Y09333 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y09333.1 /DB_XREF=gi:2832738 /FEA=mRNA /CNT=2 /TID=Rn.37524.1 /TIER=ConsEnd /STK=0 /UG=Rn.37524 /DEF=R.norvegicus mRNA for mitochondrial very-long-chain acyl-CoA thioesterase. /PROD=mitochondrial very-long-chain acyl-CoAthioesterase Y09333 acyl-CoA thioesterase 2 Acot2 192272 NM_138907 0000038 // very long-chain fatty acid metabolic process // not recorded /// 0001666 // response to hypoxia // inferred from direct assay /// 0001676 // long-chain fatty acid metabolic process // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006637 // acyl-CoA metabolic process // inferred from direct assay /// 0006637 // acyl-CoA metabolic process // not recorded /// 0006637 // acyl-CoA metabolic process // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0033555 // multicellular organismal response to stress // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042760 // very long-chain fatty acid catabolic process // inferred from direct assay /// 0070849 // response to epidermal growth factor stimulus // inferred from expression pattern 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016290 // palmitoyl-CoA hydrolase activity // inferred from direct assay /// 0016290 // palmitoyl-CoA hydrolase activity // inferred from electronic annotation /// 0016291 // acyl-CoA thioesterase activity // inferred from direct assay /// 0016291 // acyl-CoA thioesterase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016790 // thiolester hydrolase activity // inferred from electronic annotation 1388211_s_at Y09333 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y09333.1 /DB_XREF=gi:2832738 /FEA=mRNA /CNT=2 /TID=Rn.37524.1 /TIER=ConsEnd /STK=0 /UG=Rn.37524 /DEF=R.norvegicus mRNA for mitochondrial very-long-chain acyl-CoA thioesterase. /PROD=mitochondrial very-long-chain acyl-CoAthioesterase Y09333 acyl-CoA thioesterase 1 /// acyl-CoA thioesterase 2 Acot1 /// Acot2 192272 /// 50559 NM_031315 /// NM_138907 0000038 // very long-chain fatty acid metabolic process // not recorded /// 0001666 // response to hypoxia // inferred from direct assay /// 0001676 // long-chain fatty acid metabolic process // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // traceable author statement /// 0006637 // acyl-CoA metabolic process // inferred from electronic annotation /// 0006637 // acyl-CoA metabolic process // inferred from direct assay /// 0006637 // acyl-CoA metabolic process // not recorded /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0033555 // multicellular organismal response to stress // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042760 // very long-chain fatty acid catabolic process // inferred from direct assay /// 0070849 // response to epidermal growth factor stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016290 // palmitoyl-CoA hydrolase activity // inferred from electronic annotation /// 0016290 // palmitoyl-CoA hydrolase activity // inferred from direct assay /// 0016291 // acyl-CoA thioesterase activity // inferred from direct assay /// 0016291 // acyl-CoA thioesterase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016790 // thiolester hydrolase activity // inferred from electronic annotation 1388212_a_at AJ243974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ243974.1 /DB_XREF=gi:5640122 /GEN=BM1 /FEA=mRNA /CNT=2 /TID=Rn.40130.2 /TIER=ConsEnd /STK=0 /UG=Rn.40130 /DEF=Rattus norvegicus partial mRNA for BM1av1 MHC class Ib antigen, strain DA. /PROD=BM1av1 AJ243974 RT1 class Ib, locus S3 RT1-S3 294228 NM_001008886 0001916 // positive regulation of T cell mediated cytotoxicity // not recorded /// 0002489 // antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 1388213_a_at AJ243973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ243973.1 /DB_XREF=gi:5640120 /GEN=BM1 /FEA=mRNA /CNT=2 /TID=Rn.40130.3 /TIER=ConsEnd /STK=0 /UG=Rn.40130 /DEF=Rattus norvegicus partial mRNA for BM1k MHC class Ib antigen, strain SHR. /PROD=BM1k AJ243973 RT1 class Ib, locus S3 RT1-S3 294228 NM_001008886 0001916 // positive regulation of T cell mediated cytotoxicity // not recorded /// 0002489 // antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 1388214_at BI289394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289394 /DB_XREF=gi:14946917 /DB_XREF=UI-R-DK0-cfg-d-09-0-UI.s1 /CLONE=UI-R-DK0-cfg-d-09-0-UI /FEA=mRNA /CNT=2 /TID=Rn.44405.1 /TIER=ConsEnd /STK=0 /UG=Rn.44405 /UG_TITLE=Rattus norvegicus pro-protein convertase 5 isoform B (Pcsk5) mRNA, partial cds BI289394 proprotein convertase subtilisin/kexin type 5 Pcsk5 116548 XM_001078022 /// XM_342032 0001822 // kidney development // not recorded /// 0002001 // renin secretion into blood stream // not recorded /// 0006465 // signal peptide processing // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007566 // embryo implantation // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0016486 // peptide hormone processing // not recorded /// 0019067 // viral assembly, maturation, egress, and release // not recorded /// 0030323 // respiratory tube development // not recorded /// 0032455 // nerve growth factor processing // not recorded /// 0035108 // limb morphogenesis // not recorded /// 0042089 // cytokine biosynthetic process // not recorded /// 0043043 // peptide biosynthetic process // not recorded /// 0048566 // embryonic digestive tract development // not recorded /// 0048706 // embryonic skeletal system development // not recorded /// 0051605 // protein maturation by peptide bond cleavage // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005796 // Golgi lumen // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030141 // stored secretory granule // not recorded 0004175 // endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042277 // peptide binding // not recorded 1388215_at BF404656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404656 /DB_XREF=gi:11392631 /DB_XREF=UI-R-CA1-bib-b-03-0-UI.s1 /CLONE=UI-R-CA1-bib-b-03-0-UI /FEA=mRNA /CNT=2 /TID=Rn.48687.1 /TIER=ConsEnd /STK=0 /UG=Rn.48687 /UG_TITLE=Rattus norvegicus nectin-1 mRNA, partial cds BF404656 poliovirus receptor-related 1 Pvrl1 192183 XM_001066246 /// XM_236210 0002089 // lens morphogenesis in camera-type eye // inferred from electronic annotation /// 0002089 // lens morphogenesis in camera-type eye // not recorded /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // not recorded /// 0007157 // heterophilic cell-cell adhesion // inferred from electronic annotation /// 0007157 // heterophilic cell-cell adhesion // not recorded /// 0007165 // signal transduction // not recorded /// 0007411 // axon guidance // inferred from mutant phenotype /// 0046718 // entry of virus into host cell // inferred from mutant phenotype /// 0048593 // camera-type eye morphogenesis // not recorded /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0051963 // regulation of synaptogenesis // inferred from mutant phenotype /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // not recorded 0001950 // plasma membrane enriched fraction // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005913 // cell-cell adherens junction // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // not recorded /// 0016342 // catenin complex // inferred from direct assay /// 0019717 // synaptosome // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0032584 // growth cone membrane // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046790 // virion binding // inferred from mutant phenotype /// 0046982 // protein heterodimerization activity // inferred from mutant phenotype /// 0050839 // cell adhesion molecule binding // inferred from electronic annotation /// 0050839 // cell adhesion molecule binding // not recorded 1388216_at L03386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L03386.1 /DB_XREF=gi:207695 /FEA=mRNA /CNT=1 /TID=Rn.9981.2 /TIER=ConsEnd /STK=0 /UG=Rn.9981 /LL=94188 /UG_GENE=Roaz /DEF=Rattus norvegicus (clone RAHB2-58) zinc finger protein mRNA, 3 end cds. /PROD=zinc finger protein L03386 zinc finger protein 423 Zfp423 94188 NM_053583 0006350 // transcription // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // inferred from direct assay /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1388217_a_at AJ001929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ001929.1 /DB_XREF=gi:2511700 /FEA=mRNA /CNT=1 /TID=Rn.1841.1 /TIER=ConsEnd /STK=0 /UG=Rn.1841 /LL=64366 /UG_GENE=Rcn /DEF=Rattus norvegicus mRNA for of CBP-50 protein. /PROD=CBP-50 protein AJ001929 calumenin Calu 64366 NM_001033898 /// NM_022535 0014012 // peripheral nervous system axon regeneration // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0033018 // sarcoplasmic reticulum lumen // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0004857 // enzyme inhibitor activity // inferred from direct assay /// 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from direct assay 1388218_at X13722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X13722.1 /DB_XREF=gi:56569 /FEA=mRNA /CNT=1 /TID=Rn.10483.1 /TIER=ConsEnd /STK=0 /UG=Rn.10483 /UG_TITLE=Rat mRNA for LDL-receptor /DEF=Rat mRNA for LDL-receptor. X13722 low density lipoprotein receptor Ldlr 300438 NM_175762 0006629 // lipid metabolic process // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from mutant phenotype /// 0006897 // endocytosis // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007568 // aging // inferred from expression pattern /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0030299 // intestinal cholesterol absorption // inferred from electronic annotation /// 0030299 // intestinal cholesterol absorption // not recorded /// 0030301 // cholesterol transport // not recorded /// 0030301 // cholesterol transport // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0033762 // response to glucagon stimulus // inferred from expression pattern /// 0034383 // low-density lipoprotein particle clearance // inferred from electronic annotation /// 0034383 // low-density lipoprotein particle clearance // not recorded /// 0042157 // lipoprotein metabolic process // not recorded /// 0042157 // lipoprotein metabolic process // inferred from electronic annotation /// 0042159 // lipoprotein catabolic process // inferred from electronic annotation /// 0042159 // lipoprotein catabolic process // not recorded /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0043627 // response to estrogen stimulus // inferred from expression pattern 0005764 // lysosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005769 // early endosome // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005901 // caveola // inferred from direct assay /// 0005905 // coated pit // inferred from electronic annotation /// 0005905 // coated pit // not recorded /// 0009897 // external side of plasma membrane // not recorded /// 0010008 // endosome membrane // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030669 // clathrin-coated endocytic vesicle membrane // not recorded /// 0034362 // low-density lipoprotein particle // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005041 // low-density lipoprotein receptor activity // inferred from mutant phenotype /// 0005041 // low-density lipoprotein receptor activity // not recorded /// 0005041 // low-density lipoprotein receptor activity // traceable author statement /// 0005041 // low-density lipoprotein receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030169 // low-density lipoprotein binding // not recorded /// 0030169 // low-density lipoprotein binding // inferred from electronic annotation /// 0030229 // very-low-density lipoprotein receptor activity // inferred from electronic annotation /// 0030229 // very-low-density lipoprotein receptor activity // not recorded 1388219_at L10073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L10073.1 /DB_XREF=gi:310074 /FEA=mRNA /CNT=1 /TID=Rn.10572.1 /TIER=ConsEnd /STK=0 /UG=Rn.10572 /LL=79247 /UG_GENE=Htr5b /DEF=Rattus norvegicus 5-hydroxytryptamine receptor (5HT5b) mRNA, 5 end. /PROD=serotonin receptor L10073 5-hydroxytryptamine (serotonin) receptor 5B Htr5b 79247 NM_024395 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007210 // serotonin receptor signaling pathway // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // inferred from direct assay /// 0004993 // serotonin receptor activity // not recorded /// 0004993 // serotonin receptor activity // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0051378 // serotonin binding // inferred from direct assay 1388220_at L23863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L23863.1 /DB_XREF=gi:393221 /FEA=mRNA /CNT=1 /TID=Rn.81060.1 /TIER=ConsEnd /STK=0 /UG=Rn.81060 /LL=116544 /UG_GENE=Pou2f3 /UG_TITLE=POU domain, class 2, transcription factor 3 /DEF=Rat Skn1i mRNA. L23863 POU class 2 homeobox 3 Pou2f3 116544 NM_001105745 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0008544 // epidermis development // inferred from direct assay /// 0008544 // epidermis development // not recorded /// 0008544 // epidermis development // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // not recorded /// 0042060 // wound healing // inferred from electronic annotation /// 0042060 // wound healing // not recorded /// 0043922 // negative regulation by host of viral transcription // inferred from electronic annotation /// 0043922 // negative regulation by host of viral transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // not recorded 1388221_at AY009158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AY009158.1 /DB_XREF=gi:12000396 /GEN=SLC24A3 /FEA=mRNA /CNT=1 /TID=Rn.64636.1 /TIER=ConsEnd /STK=0 /UG=Rn.64636 /LL=85267 /DEF=Rattus norvegicus potassium-dependent sodium-calcium exchanger NCKX3 (SLC24A3) mRNA, partial cds. /PROD=potassium-dependent sodium-calcium exchangerNCKX3 AY009158 solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 Slc24a3 85267 NM_053505 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from direct assay /// 0006812 // cation transport // not recorded /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from expression pattern /// 0006874 // cellular calcium ion homeostasis // non-traceable author statement /// 0034220 // ion transmembrane transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008273 // calcium, potassium:sodium antiporter activity // inferred from direct assay /// 0008273 // calcium, potassium:sodium antiporter activity // not recorded /// 0008273 // calcium, potassium:sodium antiporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation 1388222_at AF247818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF247818.1 /DB_XREF=gi:7407652 /FEA=mRNA /CNT=1 /TID=Rn.48802.1 /TIER=ConsEnd /STK=0 /UG=Rn.48802 /LL=84483 /UG_GENE=Tert /DEF=Rattus norvegicus telomerase catalytic subunit mRNA, partial cds. /PROD=telomerase catalytic subunit AF247818 telomerase reverse transcriptase Tert 301965 NM_053423 0006278 // RNA-dependent DNA replication // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0007004 // telomere maintenance via telomerase // inferred from electronic annotation /// 0007004 // telomere maintenance via telomerase // not recorded /// 0008152 // metabolic process // not recorded /// 0022616 // DNA strand elongation // inferred from electronic annotation /// 0022616 // DNA strand elongation // not recorded /// 0032203 // telomere formation via telomerase // inferred from electronic annotation /// 0032203 // telomere formation via telomerase // not recorded 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005697 // telomerase holoenzyme complex // inferred from electronic annotation /// 0005697 // telomerase holoenzyme complex // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003720 // telomerase activity // not recorded /// 0003720 // telomerase activity // inferred from direct assay /// 0003720 // telomerase activity // inferred from electronic annotation /// 0003721 // telomeric template RNA reverse transcriptase activity // not recorded /// 0003721 // telomeric template RNA reverse transcriptase activity // traceable author statement /// 0003721 // telomeric template RNA reverse transcriptase activity // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003964 // RNA-directed DNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0070034 // telomeric RNA binding // inferred from electronic annotation /// 0070034 // telomeric RNA binding // not recorded 1388223_at X65747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X65747.1 /DB_XREF=gi:56301 /GEN=Gnat-3 /FEA=mRNA /CNT=1 /TID=Rn.10456.1 /TIER=ConsEnd /STK=0 /UG=Rn.10456 /DEF=R.norvegivus gnat-3 mRNA for gustducin. /PROD=gustducin X65747 guanine nucleotide binding protein, alpha transducing 3 Gnat3 286924 NM_173139 0006184 // GTP catabolic process // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007601 // visual perception // inferred from electronic annotation /// 0035094 // response to nicotine // inferred from expression pattern /// 0050896 // response to stimulus // inferred from electronic annotation /// 0050909 // sensory perception of taste // not recorded /// 0050909 // sensory perception of taste // inferred from electronic annotation /// 0050913 // sensory perception of bitter taste // inferred from electronic annotation /// 0050913 // sensory perception of bitter taste // not recorded /// 0050916 // sensory perception of sweet taste // inferred from electronic annotation /// 0050916 // sensory perception of sweet taste // not recorded /// 0050917 // sensory perception of umami taste // inferred from electronic annotation /// 0050917 // sensory perception of umami taste // not recorded 0001669 // acrosomal vesicle // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005834 // heterotrimeric G-protein complex // not recorded /// 0005886 // plasma membrane // not recorded /// 0005930 // axoneme // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation 1388224_at AJ132352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ132352.1 /DB_XREF=gi:4164417 /GEN=rsec 45 /FEA=mRNA /CNT=1 /TID=Rn.42868.1 /TIER=ConsEnd /STK=0 /UG=Rn.42868 /LL=64543 /DEF=Rattus norvegicus mRNA for 45 kDa secretory protein, partial. /PROD=45 kDa secretory protein AJ132352 SEC14-like 3 (S. cerevisiae) Sec14l3 64543 NM_022608 0006810 // transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation 1388225_at M59313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M59313.1 /DB_XREF=gi:206045 /FEA=mRNA /CNT=1 /TID=Rn.9733.3 /TIER=ConsEnd /STK=0 /UG=Rn.9733 /DEF=Rat potassium channel Kv3.2c mRNA. /PROD=potassium channel Kv3.2c M59313 potassium voltage gated channel, Shaw-related subfamily, member 2 Kcnc2 246153 NM_139216 /// NM_139217 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1388226_at X80671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X80671.1 /DB_XREF=gi:517365 /GEN=olp4 /FEA=mRNA /CNT=1 /TID=Rn.10385.1 /TIER=ConsEnd /STK=0 /UG=Rn.10385 /DEF=R.norvegicus olp4 mRNA. /PROD=olfactory receptor X80671 olfactory receptor 1271 Olr1271 286959 NM_173300 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from electronic annotation /// 0004984 // olfactory receptor activity // inferred from sequence or structural similarity 1388227_at Y13972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y13972.1 /DB_XREF=gi:2612823 /GEN=Mr1 /FEA=mRNA /CNT=1 /TID=Rn.14533.1 /TIER=ConsEnd /STK=0 /UG=Rn.14533 /DEF=Rattus norvegicus mRNA for MHC class I-related protein, Mr1. /PROD=MHC class I-related protein Y13972 major histocompatibility complex, class I-related Mr1 25119 NM_001100635 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 1388228_at U57049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U57049.1 /DB_XREF=gi:1354771 /FEA=mRNA /CNT=1 /TID=Rn.10494.1 /TIER=ConsEnd /STK=0 /UG=Rn.10494 /LL=81724 /UG_GENE=Mthfr /DEF=Rattus norvegicus methylenetetrahydrofolate reductase mRNA, partial cds. /PROD=methylenetetrahydrofolate reductase U57049 5,10-methylenetetrahydrofolate reductase (NADPH) Mthfr 362657 XM_001074061 /// XM_342975 0006555 // methionine metabolic process // inferred from electronic annotation /// 0009086 // methionine biosynthetic process // not recorded /// 0033274 // response to vitamin B2 // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0046653 // tetrahydrofolate metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0070555 // response to interleukin-1 // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005829 // cytosol // not recorded 0004489 // methylenetetrahydrofolate reductase (NADPH) activity // inferred from direct assay /// 0004489 // methylenetetrahydrofolate reductase (NADPH) activity // not recorded /// 0004489 // methylenetetrahydrofolate reductase (NADPH) activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from direct assay /// 0050661 // NADP or NADPH binding // inferred from direct assay 1388229_a_at M22359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M22359.1 /DB_XREF=gi:202574 /GEN=alpha-1-inhibitor III /FEA=mRNA /CNT=1 /TID=Rn.54491.3 /TIER=ConsEnd /STK=0 /UG=Rn.54491 /LL=65279 /DEF=Rat plasma proteinase inhibitor alpha-1-inhibitor III mRNA, 3 end. /PROD=alpha-1-inhibitor III M22359 murinoglobulin 1 Mug1 497794 NM_023103 0006953 // acute-phase response // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0004866 // endopeptidase inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // traceable author statement /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1388230_at AJ306292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ306292.1 /DB_XREF=gi:12711385 /FEA=mRNA /CNT=1 /TID=Rn.64634.1 /TIER=ConsEnd /STK=0 /UG=Rn.64634 /LL=85265 /UG_GENE=Jub /DEF=Rattus norvegicus partial mRNA for Ajuba protein (ORF1). /PROD=Ajuba protein AJ306292 jub, ajuba homolog (Xenopus laevis) Jub 85265 NM_053503 0007049 // cell cycle // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0030032 // lamellipodium assembly // inferred from electronic annotation /// 0030032 // lamellipodium assembly // not recorded /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0030334 // regulation of cell migration // not recorded /// 0035313 // wound healing, spreading of epidermal cells // inferred from electronic annotation /// 0035313 // wound healing, spreading of epidermal cells // not recorded /// 0043087 // regulation of GTPase activity // inferred from electronic annotation /// 0043087 // regulation of GTPase activity // not recorded /// 0048041 // focal adhesion assembly // inferred from electronic annotation /// 0048041 // focal adhesion assembly // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030054 // cell junction // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388231_at U67888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U67888.1 /DB_XREF=gi:4097754 /GEN=RMCP-3 /FEA=mRNA /CNT=1 /TID=Rn.42896.1 /TIER=ConsEnd /STK=0 /UG=Rn.42896 /DEF=Rattus norvegicus mast cell protease 3 (RMCP-3) mRNA, partial cds. /PROD=mast cell protease 3 U67888 mast cell peptidase 3 Mcpt3 290244 NM_001170466 0006508 // proteolysis // inferred from electronic annotation 0042629 // mast cell granule // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation 1388232_a_at AF007819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF007819.1 /DB_XREF=gi:2257973 /FEA=mRNA /CNT=1 /TID=Rn.9891.3 /TIER=ConsEnd /STK=0 /UG=Rn.9891 /LL=24536 /UG_GENE=Lepr /DEF=Rattus norvegicus leptin receptor Ob-Re mRNA, partial cds. /PROD=leptin receptor Ob-Re AF007819 leptin receptor Lepr 24536 NM_012596 0001525 // angiogenesis // inferred from mutant phenotype /// 0001542 // ovulation from ovarian follicle // inferred from expression pattern /// 0006091 // generation of precursor metabolites and energy // non-traceable author statement /// 0007565 // female pregnancy // inferred from expression pattern /// 0008203 // cholesterol metabolic process // not recorded /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0031669 // cellular response to nutrient levels // inferred from expression pattern /// 0033210 // leptin-mediated signaling pathway // inferred from direct assay /// 0035094 // response to nicotine // inferred from expression pattern /// 0042221 // response to chemical stimulus // inferred from expression pattern /// 0042755 // eating behavior // inferred from mutant phenotype /// 0043410 // positive regulation of MAPKKK cascade // inferred from direct assay /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0051346 // negative regulation of hydrolase activity // not recorded /// 0051346 // negative regulation of hydrolase activity // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016500 // protein-hormone receptor activity // inferred from direct assay /// 0016500 // protein-hormone receptor activity // inferred from mutant phenotype /// 0017046 // peptide hormone binding // inferred from direct assay /// 0017046 // peptide hormone binding // inferred from mutant phenotype 1388233_at AF065161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF065161.1 /DB_XREF=gi:3158431 /FEA=mRNA /CNT=1 /TID=Rn.14523.1 /TIER=ConsEnd /STK=0 /UG=Rn.14523 /LL=83681 /UG_GENE=Cish /DEF=Rattus norvegicus cytokine-inducible SH2-containing protein mRNA, partial cds. /PROD=cytokine-inducible SH2-containing protein AF065161 cytokine inducible SH2-containing protein Cish 83681 NM_031804 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // not recorded /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from expression pattern /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0040008 // regulation of growth // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388234_at X00336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X00336.1 /DB_XREF=gi:56397 /FEA=mRNA /CNT=1 /TID=Rn.10472.1 /TIER=ConsEnd /STK=0 /UG=Rn.10472 /DEF=Rat mRNA for interferon-alpha 1 (IFN-alpha1). /PROD=IFN X00336 interferon-alpha 1 Ifna1 298210 NM_001014786 0006952 // defense response // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005126 // cytokine receptor binding // inferred from electronic annotation 1388235_at X77816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X77816.1 /DB_XREF=gi:471331 /GEN=VCS-beta1 /FEA=mRNA /CNT=1 /TID=Rn.10405.1 /TIER=ConsEnd /STK=0 /UG=Rn.10405 /DEF=R.norvegicus VSC-beta1 mRNA for PR-Vbeta1. /PROD=PR-Vbeta1 X77816 submaxillary gland androgen regulated protein 3A Smr3a 498341 NM_001017497 1388236_x_at M24026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M24026.1 /DB_XREF=gi:205446 /FEA=mRNA /CNT=1 /TID=Rn.39743.16 /TIER=ConsEnd /STK=0 /UG=Rn.39743 /LL=24737 /UG_GENE=RT1Aw2 /UG_TITLE=RT1 class Ib gene /DEF=Rat MHC class I RT1 (RT44) mRNA (u haplotype), 3 end. M24026 RT1 class I, locus CE12 RT1-CE12 309600 NM_001008835 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 1388237_s_at M96626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M96626.1 /DB_XREF=gi:203212 /GEN=CA2+-ATPase /FEA=mRNA /CNT=1 /TID=Rn.11053.1 /TIER=ConsEnd /STK=0 /UG=Rn.11053 /LL=29599 /DEF=RAT plasma membrane CA2+-ATPase isoform 3 mRNA, partial cds. /PROD=CA2+-ATPase isoform 3 M96626 ATPase, Ca++ transporting, plasma membrane 3 Atp2b3 29599 NM_133288 0003407 // neural retina development // inferred from expression pattern /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015085 // calcium ion transmembrane transporter activity // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1388238_at AF115768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF115768.1 /DB_XREF=gi:4559279 /FEA=mRNA /CNT=1 /TID=Rn.48725.1 /TIER=ConsEnd /STK=0 /UG=Rn.48725 /DEF=Rattus norvegicus defensin-5 precursor mRNA, partial cds. /PROD=defensin-5 precursor AF115768 defensin, alpha, 24 Defa24 290856 NM_001013053 0006952 // defense response // inferred from electronic annotation /// 0042742 // defense response to bacterium // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 1388239_at AF311875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF311875.1 /DB_XREF=gi:11321329 /FEA=mRNA /CNT=1 /TID=Rn.64521.1 /TIER=ConsEnd /STK=0 /UG=Rn.64521 /LL=78962 /UG_GENE=Per3 /DEF=Rattus norvegicus PERIOD 3 mRNA, partial cds. /PROD=PERIOD 3 AF311875 period homolog 3 (Drosophila) Per3 78962 NM_023978 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from electronic annotation /// 0007623 // circadian rhythm // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388240_a_at X74294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X74294.1 /DB_XREF=gi:437912 /GEN=alpha 7 integrin /FEA=mRNA /CNT=1 /TID=Rn.54492.2 /TIER=ConsEnd /STK=0 /UG=Rn.54492 /LL=81008 /DEF=R.norvegicus mRNA for alpha 7C integrin. /PROD=alpha 7C integrin X74294 integrin, alpha 7 Itga7 81008 NM_030842 0007155 // cell adhesion // inferred from direct assay /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from mutant phenotype /// 0007229 // integrin-mediated signaling pathway // inferred from direct assay /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // not recorded 0005737 // cytoplasm // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0008305 // integrin complex // inferred from electronic annotation /// 0008305 // integrin complex // inferred from mutant phenotype /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0043236 // laminin binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from mutant phenotype /// 0050839 // cell adhesion molecule binding // inferred from direct assay 1388241_at AF139918 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF139918.1 /DB_XREF=gi:4928619 /FEA=mRNA /CNT=1 /TID=Rn.48700.1 /TIER=ConsEnd /STK=0 /UG=Rn.48700 /LL=114215 /UG_GENE=Insl3 /DEF=Rattus norvegicus relaxin-like factor mRNA, partial cds. /PROD=relaxin-like factor AF139918 insulin-like 3 Insl3 114215 NM_053680 0001556 // oocyte maturation // inferred from direct assay /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008406 // gonad development // traceable author statement /// 0008584 // male gonad development // inferred from direct assay /// 0008584 // male gonad development // not recorded /// 0008584 // male gonad development // inferred from electronic annotation /// 0030819 // positive regulation of cAMP biosynthetic process // inferred from direct assay /// 0043066 // negative regulation of apoptosis // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0001664 // G-protein-coupled receptor binding // inferred from physical interaction /// 0005179 // hormone activity // inferred from electronic annotation 1388242_at BF403075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403075 /DB_XREF=gi:11391050 /DB_XREF=UI-R-CA0-biy-f-12-0-UI.s1 /CLONE=UI-R-CA0-biy-f-12-0-UI /FEA=mRNA /CNT=3 /TID=Rn.44656.1 /TIER=ConsEnd /STK=0 /UG=Rn.44656 /LL=117257 /UG_GENE=Gpr /UG_TITLE=putative G protein coupled receptor BF403075 G protein-coupled receptor 176 Gpr176 117257 XM_001080723 /// XM_342493 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1388243_at BG663422 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663422 /DB_XREF=gi:13885344 /DB_XREF=DRAAAIG11 /CLONE=DRAAAIG11 /FEA=mRNA /CNT=3 /TID=Rn.44656.1 /TIER=ConsEnd /STK=0 /UG=Rn.44656 /LL=117257 /UG_GENE=Gpr /UG_TITLE=putative G protein coupled receptor BG663422 G protein-coupled receptor 176 Gpr176 117257 XM_001080723 /// XM_342493 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1388244_s_at BG153272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG153272 /DB_XREF=gi:12665302 /DB_XREF=nag11c07.x1 /CLONE=IMAGE:4175988 /FEA=mRNA /CNT=2 /TID=Rn.80101.1 /TIER=ConsEnd /STK=1 /UG=Rn.80101 /UG_TITLE=Rat laminin receptor mRNA, 3 end BG153272 ribosomal protein SA Rpsa 29236 NM_017138 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0016337 // cell-cell adhesion // inferred from direct assay /// 0030855 // epithelial cell differentiation // inferred from expression pattern 0005604 // basement membrane // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005055 // laminin receptor activity // traceable author statement /// 0005198 // structural molecule activity // inferred by curator /// 0043022 // ribosome binding // not recorded /// 0043236 // laminin binding // not recorded 1388245_a_at U02315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U02315.1 /DB_XREF=gi:408380 /FEA=mRNA /CNT=1 /TID=Rn.37438.8 /TIER=ConsEnd /STK=0 /UG=Rn.37438 /LL=112400 /UG_GENE=Nrg1 /DEF=Rattus norvegicus clone ndf04 neu differentiation factor mRNA, partial cds. /PROD=neu differentiation factor U02315 neuregulin 1 Nrg1 112400 NM_031588 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000165 // MAPKKK cascade // not recorded /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007171 // activation of transmembrane receptor protein tyrosine kinase activity // not recorded /// 0007219 // Notch signaling pathway // not recorded /// 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007416 // synapse assembly // inferred from electronic annotation /// 0007416 // synapse assembly // not recorded /// 0007422 // peripheral nervous system development // inferred from electronic annotation /// 0007422 // peripheral nervous system development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007517 // muscle organ development // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008217 // regulation of blood pressure // inferred from expression pattern /// 0008283 // cell proliferation // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0010001 // glial cell differentiation // inferred from electronic annotation /// 0010001 // glial cell differentiation // not recorded /// 0010667 // negative regulation of cardiac muscle cell apoptosis // not recorded /// 0015758 // glucose transport // inferred from mutant phenotype /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030307 // positive regulation of cell growth // not recorded /// 0042060 // wound healing // not recorded /// 0042552 // myelination // inferred from expression pattern /// 0043497 // regulation of protein heterodimerization activity // not recorded /// 0043624 // cellular protein complex disassembly // not recorded /// 0045213 // neurotransmitter receptor metabolic process // inferred from electronic annotation /// 0045213 // neurotransmitter receptor metabolic process // not recorded /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // not recorded /// 0045785 // positive regulation of cell adhesion // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0051048 // negative regulation of secretion // not recorded /// 0051155 // positive regulation of striated muscle cell differentiation // not recorded /// 0055007 // cardiac muscle cell differentiation // not recorded /// 0055012 // ventricular cardiac muscle cell differentiation // not recorded /// 0060045 // positive regulation of cardiac muscle cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0003712 // transcription cofactor activity // not recorded /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005176 // ErbB-2 class receptor binding // inferred from electronic annotation /// 0005176 // ErbB-2 class receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0030296 // protein tyrosine kinase activator activity // not recorded /// 0043125 // ErbB-3 class receptor binding // inferred from mutant phenotype /// 0043125 // ErbB-3 class receptor binding // not recorded 1388246_at AF314657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF314657.1 /DB_XREF=gi:11127973 /FEA=mRNA /CNT=2 /TID=Rn.1780.3 /TIER=ConsEnd /STK=0 /UG=Rn.1780 /LL=24854 /UG_GENE=Clu /DEF=Rattus norvegicus clusterin mRNA, partial cds. /PROD=clusterin AF314657 clusterin Clu 24854 NM_053021 0006915 // apoptosis // traceable author statement /// 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0006950 // response to stress // inferred from expression pattern /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008219 // cell death // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0009611 // response to wounding // inferred from expression pattern /// 0009615 // response to virus // inferred from electronic annotation /// 0009615 // response to virus // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031018 // endocrine pancreas development // inferred from mutant phenotype /// 0032463 // negative regulation of protein homooligomerization // inferred from electronic annotation /// 0032463 // negative regulation of protein homooligomerization // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // inferred from mutant phenotype /// 0048812 // neuron projection morphogenesis // inferred from mutant phenotype /// 0051788 // response to misfolded protein // inferred from electronic annotation /// 0051788 // response to misfolded protein // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016235 // aggresome // inferred from direct assay /// 0031012 // extracellular matrix // not recorded /// 0034366 // spherical high-density lipoprotein particle // inferred from electronic annotation /// 0034366 // spherical high-density lipoprotein particle // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0051787 // misfolded protein binding // inferred from electronic annotation /// 0051787 // misfolded protein binding // not recorded 1388247_at U48828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U48828.1 /DB_XREF=gi:1213335 /FEA=mRNA /CNT=1 /TID=Rn.25151.1 /TIER=ConsEnd /STK=0 /UG=Rn.25151 /UG_TITLE=Rattus norvegicus retroviral-like ovarian specific transcript 30-1 mRNA /DEF=Rattus norvegicus retroviral-like ovarian specific transcript 30-1 mRNA. U48828 1388248_at L26293 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L26293.1 /DB_XREF=gi:425470 /FEA=mRNA /CNT=1 /TID=Rn.10415.1 /TIER=ConsEnd /STK=0 /UG=Rn.10415 /UG_TITLE=Rattus norvegicus (clone 180) FSH-regulated protein mRNA /DEF=Rattus norvegicus (clone 180) FSH-regulated protein mRNA. L26293 1388249_at AJ249986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ249986.1 /DB_XREF=gi:6119708 /GEN=c3g /FEA=mRNA /CNT=1 /TID=Rn.49226.1 /TIER=ConsEnd /STK=0 /UG=Rn.49226 /LL=63881 /DEF=Rattus norvegicus partial mRNA for C3G protein (c3g gene). /PROD=C3G protein AJ249986 Rap guanine nucleotide exchange factor (GEF) 1 Rapgef1 63881 XM_001079347 /// XM_216018 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1388250_at AB012232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB012232.1 /DB_XREF=gi:2982731 /GEN=NF1-B /FEA=mRNA /CNT=1 /TID=Rn.9909.2 /TIER=ConsEnd /STK=0 /UG=Rn.9909 /LL=29227 /DEF=Rattus norvegicus mRNA for NF1-B3, partial cds. /PROD=NF1-B3 AB012232 nuclear factor I/B Nfib 29227 NM_031566 0006260 // DNA replication // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007608 // sensory perception of smell // non-traceable author statement /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016481 // negative regulation of transcription // traceable author statement /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0030902 // hindbrain development // inferred from electronic annotation /// 0030902 // hindbrain development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded 1388251_at AB020615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB020615.1 /DB_XREF=gi:4996215 /GEN=PKC lambda /FEA=mRNA /CNT=1 /TID=Rn.42887.1 /TIER=ConsEnd /STK=0 /UG=Rn.42887 /LL=84006 /UG_TITLE=protein kinase C, lambda /DEF=Rattus norvegicus PKC lambda mRNA, partial cds. AB020615 protein kinase C, iota Prkci 84006 NM_032059 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0007015 // actin filament organization // not recorded /// 0007015 // actin filament organization // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from mutant phenotype /// 0032869 // cellular response to insulin stimulus // not recorded /// 0035089 // establishment of apical/basal cell polarity // not recorded /// 0035089 // establishment of apical/basal cell polarity // inferred from electronic annotation /// 0042462 // eye photoreceptor cell development // not recorded /// 0042462 // eye photoreceptor cell development // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0045216 // cell-cell junction organization // not recorded /// 0046326 // positive regulation of glucose import // not recorded /// 0046326 // positive regulation of glucose import // inferred from electronic annotation /// 0048194 // Golgi vesicle budding // inferred from direct assay /// 0070555 // response to interleukin-1 // inferred from mutant phenotype /// 0090004 // positive regulation of establishment of protein localization in plasma membrane // not recorded /// 0090004 // positive regulation of establishment of protein localization in plasma membrane // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005923 // tight junction // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004697 // protein kinase C activity // not recorded /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005543 // phospholipid binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388252_at M17960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M17960.1 /DB_XREF=gi:204768 /FEA=mRNA /CNT=1 /TID=Rn.964.4 /TIER=ConsEnd /STK=0 /UG=Rn.964 /LL=24483 /UG_GENE=Igf2 /UG_TITLE=Insulin-like growth factor II (somatomedin A) /DEF=Rat insulin-like growth factor II (IGFII) mRNA, 5 flanking region. M17960 insulin-like growth factor 2 Igf2 24483 NM_001190162 /// NM_001190163 /// NM_031511 0001503 // ossification // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0009314 // response to radiation // inferred from expression pattern /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0031017 // exocrine pancreas development // inferred from electronic annotation /// 0031017 // exocrine pancreas development // not recorded /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0035094 // response to nicotine // inferred from expression pattern /// 0042493 // response to drug // inferred from direct assay /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0045840 // positive regulation of mitosis // inferred from electronic annotation /// 0045840 // positive regulation of mitosis // not recorded /// 0046628 // positive regulation of insulin receptor signaling pathway // inferred from electronic annotation /// 0046628 // positive regulation of insulin receptor signaling pathway // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling cascade // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation 0005158 // insulin receptor binding // inferred from electronic annotation /// 0005158 // insulin receptor binding // not recorded /// 0005159 // insulin-like growth factor receptor binding // inferred from electronic annotation /// 0005159 // insulin-like growth factor receptor binding // not recorded /// 0005179 // hormone activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // not recorded /// 0008083 // growth factor activity // traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation 1388253_at M15114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M15114.1 /DB_XREF=gi:206274 /FEA=mRNA /CNT=1 /TID=Rn.2627.2 /TIER=ConsEnd /STK=0 /UG=Rn.2627 /LL=83792 /UG_GENE=Scd2 /UG_TITLE=stearoyl-CoA desaturase 2 /DEF=Rat DNA polymerase alpha mRNA, 3 end. M15114 Stearoyl-CoA desaturase (delta-9-desaturase) Scd 83792 NM_031841 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // traceable author statement /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0042552 // myelination // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded 0004768 // stearoyl-CoA 9-desaturase activity // inferred from direct assay /// 0004768 // stearoyl-CoA 9-desaturase activity // traceable author statement /// 0004768 // stearoyl-CoA 9-desaturase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016717 // oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water // inferred from electronic annotation 1388254_a_at AJ243338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ243338.1 /DB_XREF=gi:5305187 /GEN=rt1-Eg /FEA=mRNA /CNT=1 /TID=Rn.39743.18 /TIER=ConsEnd /STK=0 /UG=Rn.39743 /LL=24737 /DEF=Rattus norvegicus mRNA for MHC class Ib molecule RT1-Eg (rt1-Eg gene). /PROD=RT1-Eg protein AJ243338 RT1 class I, locus CE5 RT1-CE5 309607 NM_001008843 /// NM_001033986 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 1388255_x_at AJ243338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ243338.1 /DB_XREF=gi:5305187 /GEN=rt1-Eg /FEA=mRNA /CNT=1 /TID=Rn.39743.18 /TIER=ConsEnd /STK=0 /UG=Rn.39743 /LL=24737 /DEF=Rattus norvegicus mRNA for MHC class Ib molecule RT1-Eg (rt1-Eg gene). /PROD=RT1-Eg protein AJ243338 RT1 class I, locus CE5 RT1-CE5 309607 NM_001008843 /// NM_001033986 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 1388256_at AJ005023 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ005023.1 /DB_XREF=gi:3006073 /FEA=mRNA /CNT=1 /TID=Rn.39743.19 /TIER=ConsEnd /STK=0 /UG=Rn.39743 /LL=24737 /UG_GENE=RT1Aw2 /DEF=Rattus norvegicus mRNA for mature MHC class Ib alpha chain, clone cc9. /PROD=MHC class Ib alpha chain AJ005023 RT1 class I, locus A3 RT1-A3 309627 NM_001008830 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 1388257_at AF266164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF266164.1 /DB_XREF=gi:8570179 /FEA=mRNA /CNT=1 /TID=Rn.10608.2 /TIER=ConsEnd /STK=0 /UG=Rn.10608 /LL=117284 /UG_GENE=LOC117284 /DEF=Rattus norvegicus densin-180 variant D mRNA, partial cds, alternatively spliced. /PROD=densin-180 variant D AF266164 leucine rich repeat containing 7 Lrrc7 117284 NM_057142 0006950 // response to stress // inferred from expression pattern /// 0010976 // positive regulation of neuron projection development // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0030175 // filopodium // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from mutant phenotype 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from direct assay 1388258_at AF194443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF194443.1 /DB_XREF=gi:11066047 /GEN=Nrg1 /FEA=mRNA /CNT=1 /TID=Rn.37438.9 /TIER=ConsEnd /STK=0 /UG=Rn.37438 /LL=112400 /DEF=Rattus norvegicus SMDF neuregulin beta 3 (Nrg1) mRNA, partial cds, alternatively spliced. /PROD=SMDF neuregulin beta 3 AF194443 neuregulin 1 Nrg1 112400 NM_031588 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000165 // MAPKKK cascade // not recorded /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007171 // activation of transmembrane receptor protein tyrosine kinase activity // not recorded /// 0007219 // Notch signaling pathway // not recorded /// 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007416 // synapse assembly // inferred from electronic annotation /// 0007416 // synapse assembly // not recorded /// 0007422 // peripheral nervous system development // inferred from electronic annotation /// 0007422 // peripheral nervous system development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007517 // muscle organ development // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0008217 // regulation of blood pressure // inferred from expression pattern /// 0008283 // cell proliferation // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0010001 // glial cell differentiation // inferred from electronic annotation /// 0010001 // glial cell differentiation // not recorded /// 0010667 // negative regulation of cardiac muscle cell apoptosis // not recorded /// 0015758 // glucose transport // inferred from mutant phenotype /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030307 // positive regulation of cell growth // not recorded /// 0042060 // wound healing // not recorded /// 0042552 // myelination // inferred from expression pattern /// 0043497 // regulation of protein heterodimerization activity // not recorded /// 0043624 // cellular protein complex disassembly // not recorded /// 0045213 // neurotransmitter receptor metabolic process // inferred from electronic annotation /// 0045213 // neurotransmitter receptor metabolic process // not recorded /// 0045595 // regulation of cell differentiation // inferred from electronic annotation /// 0045595 // regulation of cell differentiation // not recorded /// 0045785 // positive regulation of cell adhesion // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0051048 // negative regulation of secretion // not recorded /// 0051155 // positive regulation of striated muscle cell differentiation // not recorded /// 0055007 // cardiac muscle cell differentiation // not recorded /// 0055012 // ventricular cardiac muscle cell differentiation // not recorded /// 0060045 // positive regulation of cardiac muscle cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0003712 // transcription cofactor activity // not recorded /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005176 // ErbB-2 class receptor binding // inferred from electronic annotation /// 0005176 // ErbB-2 class receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0030296 // protein tyrosine kinase activator activity // not recorded /// 0043125 // ErbB-3 class receptor binding // inferred from mutant phenotype /// 0043125 // ErbB-3 class receptor binding // not recorded 1388259_at M29294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M29294.1 /DB_XREF=gi:207007 /FEA=mRNA /CNT=1 /TID=Rn.11169.2 /TIER=ConsEnd /STK=0 /UG=Rn.11169 /LL=81781 /UG_GENE=Snrpn /UG_TITLE=small nuclear ribonucleoparticle-associated protein (snRNP) mRNA, clone Sm51 /DEF=Rat small nuclear ribonucleoparticle-associated protein (snRNP) mRNA, 3 end, clone Sm21. M29294 small nuclear ribonucleoprotein polypeptide N Snrpn 81781 NM_031117 0009725 // response to hormone stimulus // inferred from expression pattern 0005634 // nucleus // inferred from expression pattern /// 0005634 // nucleus // inferred from electronic annotation /// 0005685 // U1 snRNP // inferred from direct assay /// 0005686 // U2 snRNP // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1388260_a_at AF007818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF007818.1 /DB_XREF=gi:2257971 /FEA=mRNA /CNT=1 /TID=Rn.9891.5 /TIER=ConsEnd /STK=0 /UG=Rn.9891 /LL=24536 /UG_GENE=Lepr /DEF=Rattus norvegicus leptin receptor Ob-Rc mRNA, partial cds. /PROD=leptin receptor Ob-Rc AF007818 leptin receptor Lepr 24536 NM_012596 0001525 // angiogenesis // inferred from mutant phenotype /// 0001542 // ovulation from ovarian follicle // inferred from expression pattern /// 0006091 // generation of precursor metabolites and energy // non-traceable author statement /// 0007565 // female pregnancy // inferred from expression pattern /// 0008203 // cholesterol metabolic process // not recorded /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0031669 // cellular response to nutrient levels // inferred from expression pattern /// 0033210 // leptin-mediated signaling pathway // inferred from direct assay /// 0035094 // response to nicotine // inferred from expression pattern /// 0042221 // response to chemical stimulus // inferred from expression pattern /// 0042755 // eating behavior // inferred from mutant phenotype /// 0043410 // positive regulation of MAPKKK cascade // inferred from direct assay /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0051346 // negative regulation of hydrolase activity // not recorded /// 0051346 // negative regulation of hydrolase activity // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016500 // protein-hormone receptor activity // inferred from direct assay /// 0016500 // protein-hormone receptor activity // inferred from mutant phenotype /// 0017046 // peptide hormone binding // inferred from direct assay /// 0017046 // peptide hormone binding // inferred from mutant phenotype 1388261_at AF195789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF195789.1 /DB_XREF=gi:11066168 /GEN=Drp2 /FEA=mRNA /CNT=1 /TID=Rn.64510.3 /TIER=ConsEnd /STK=0 /UG=Rn.64510 /LL=66027 /DEF=Rattus norvegicus dystrophin-related protein 2 splice variant (Drp2) mRNA, partial cds. /PROD=dystrophin-related protein 2 splice variant AF195789 dystrophin related protein 2 Drp2 66027 NM_023971 0050808 // synapse organization // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0030425 // dendrite // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388262_at AJ276137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ276137.1 /DB_XREF=gi:9828135 /GEN=kcna6 /FEA=mRNA /CNT=1 /TID=Rn.64494.1 /TIER=ConsEnd /STK=0 /UG=Rn.64494 /LL=64358 /DEF=Rattus norvegicus partial mRNA for Kv1.6 voltage-gated potassium channel (kcna6 gene). /PROD=Kv1.6 voltage-gated potassium channel AJ276137 potassium voltage gated channel, shaker related subfamily, member 6 Kcna6 64358 NM_023954 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1388263_at AJ276137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ276137.1 /DB_XREF=gi:9828135 /GEN=kcna6 /FEA=mRNA /CNT=1 /TID=Rn.64494.1 /TIER=ConsEnd /STK=0 /UG=Rn.64494 /LL=64358 /DEF=Rattus norvegicus partial mRNA for Kv1.6 voltage-gated potassium channel (kcna6 gene). /PROD=Kv1.6 voltage-gated potassium channel AJ276137 potassium voltage gated channel, shaker related subfamily, member 6 Kcna6 64358 NM_023954 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1388264_at AJ242018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ242018.1 /DB_XREF=gi:4808330 /GEN=sptbn1 /FEA=mRNA /CNT=1 /TID=Rn.42873.1 /TIER=ConsEnd /STK=0 /UG=Rn.42873 /LL=59306 /DEF=Rattus norvegicus mRNA for short form of beta II spectrin, partial. /PROD=beta II spectrin AJ242018 spectrin, beta, non-erythrocytic 1 Sptbn1 305614 NM_001013130 0007182 // common-partner SMAD protein phosphorylation // not recorded /// 0007182 // common-partner SMAD protein phosphorylation // inferred from electronic annotation /// 0007184 // SMAD protein nuclear translocation // not recorded /// 0007184 // SMAD protein nuclear translocation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008091 // spectrin // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // not recorded /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0032437 // cuticular plate // not recorded /// 0032437 // cuticular plate // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1388265_x_at AF084544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF084544.1 /DB_XREF=gi:5730396 /FEA=mRNA /CNT=1 /TID=Rn.35666.3 /TIER=ConsEnd /STK=0 /UG=Rn.35666 /LL=114122 /UG_GENE=Cspg2 /DEF=Rattus norvegicus versican Vint isoform, mRNA, partial cds. /PROD=versican Vint isoform AF084544 versican Vcan 114122 NM_001170558 /// NM_001170559 /// NM_001170560 /// NM_053663 /// XM_001058357 /// XM_215451 0001657 // ureteric bud development // not recorded /// 0006928 // cellular component movement // traceable author statement /// 0007155 // cell adhesion // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0008347 // glial cell migration // inferred from electronic annotation /// 0008347 // glial cell migration // not recorded /// 0009611 // response to wounding // inferred from expression pattern /// 0031103 // axon regeneration // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // traceable author statement 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // traceable author statement /// 0005540 // hyaluronic acid binding // inferred from electronic annotation /// 0030169 // low-density lipoprotein binding // traceable author statement 1388266_at M35602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M35602.1 /DB_XREF=gi:204141 /FEA=mRNA /CNT=1 /TID=Rn.10923.1 /TIER=ConsEnd /STK=0 /UG=Rn.10923 /LL=24366 /UG_GENE=Fgb /UG_TITLE=Fibrinogen, B beta polypeptide /DEF=Rat beta-fibrinogen mRNA, 3 end. M35602 fibrinogen beta chain Fgb 24366 NM_020071 0007165 // signal transduction // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from electronic annotation /// 0030168 // platelet activation // inferred from electronic annotation /// 0042060 // wound healing // traceable author statement /// 0051258 // protein polymerization // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005577 // fibrinogen complex // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005938 // cell cortex // not recorded /// 0009897 // external side of plasma membrane // not recorded /// 0031091 // platelet alpha granule // not recorded /// 0031093 // platelet alpha granule lumen // not recorded 0005102 // receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030674 // protein binding, bridging // inferred from electronic annotation /// 0043499 // eukaryotic cell surface binding // not recorded /// 0051087 // chaperone binding // not recorded 1388267_a_at M24327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M24327.1 /DB_XREF=gi:205379 /FEA=mRNA /CNT=1 /TID=Rn.54397.2 /TIER=ConsEnd /STK=0 /UG=Rn.54397 /UG_TITLE=Rattus norvegicus metallothionein 1 mRNA, partial cds /DEF=Rat metallothionein mRNA, 3 end. M24327 metallothionein 1a Mt1a 24567 NM_138826 0006875 // cellular metal ion homeostasis // not recorded /// 0006882 // cellular zinc ion homeostasis // not recorded /// 0007263 // nitric oxide mediated signal transduction // not recorded /// 0010273 // detoxification of copper ion // not recorded 0005764 // lysosome // not recorded /// 0005829 // cytosol // not recorded 0005507 // copper ion binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // not recorded 1388268_at AF053361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF053361.1 /DB_XREF=gi:3335513 /GEN=Tpm5 /FEA=mRNA /CNT=1 /TID=Rn.37575.3 /TIER=ConsEnd /STK=0 /UG=Rn.37575 /LL=117557 /DEF=Rattus norvegicus nonmuscle tropomyosin 5 (Tpm5) isoform NM 10 mRNA, partial cds. /PROD=nonmuscle tropomyosin 5 AF053361 tropomyosin 3, gamma Tpm3 117557 NM_057208 /// NM_173111 0007420 // brain development // inferred from expression pattern 0002102 // podosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1388269_at BE108901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108901 /DB_XREF=gi:8501006 /DB_XREF=UI-R-BS1-ayz-f-12-0-UI.s1 /CLONE=UI-R-BS1-ayz-f-12-0-UI /FEA=DNA /CNT=198 /TID=Rn.118.1 /TIER=Stack /STK=178 /UG=Rn.118 /LL=94164 /UG_GENE=Hbb-y /UG_TITLE=hemoglobin Y, beta-like embryonic chain BE108901 hemoglobin, gamma A Hbg1 94164 NM_172093 0006810 // transport // inferred from electronic annotation /// 0015671 // oxygen transport // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from direct assay 0005833 // hemoglobin complex // inferred from direct assay /// 0005833 // hemoglobin complex // inferred from electronic annotation 0005344 // oxygen transporter activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019825 // oxygen binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from direct assay /// 0020037 // heme binding // inferred from electronic annotation /// 0031721 // hemoglobin alpha binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1388270_at BE107364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107364 /DB_XREF=gi:8499469 /DB_XREF=UI-R-BS1-ays-h-05-0-UI.s1 /CLONE=UI-R-BS1-ays-h-05-0-UI /FEA=DNA /CNT=99 /TID=Rn.37881.1 /TIER=Stack /STK=93 /UG=Rn.37881 /UG_TITLE=R.norvegicus epsilon 1 globin gene BE107364 hemoglobin, epsilon 1 Hbe1 293267 NM_001008890 0006810 // transport // inferred from electronic annotation /// 0015671 // oxygen transport // inferred from electronic annotation 0005833 // hemoglobin complex // inferred from electronic annotation 0005344 // oxygen transporter activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0019825 // oxygen binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388271_at BM383531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383531 /DB_XREF=gi:18183584 /DB_XREF=UI-R-DM1-cka-o-16-0-UI.s1 /CLONE=UI-R-DM1-cka-o-16-0-UI /FEA=DNA_2 /CNT=18 /TID=Rn.64596.1 /TIER=Stack /STK=10 /UG=Rn.64596 /UG_TITLE=Rat metallothionein-2 and metallothionein-1 genes, complete cds BM383531 metallothionein 2A Mt2A 689415 NM_001137564 0006882 // cellular zinc ion homeostasis // not recorded /// 0007263 // nitric oxide mediated signal transduction // not recorded /// 0010273 // detoxification of copper ion // not recorded 0005515 // protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1388272_at AI411947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411947 /DB_XREF=gi:4255451 /DB_XREF=EST240241 /CLONE=RKIES02 /FEA=DNA /CNT=11 /TID=Rn.968.1 /TIER=Stack /STK=7 /UG=Rn.968 /UG_TITLE=Rattus norvegicus rearranged IgG-2b gene, last 4 exons AI411947 mCG147639-like LOC100363606 100363606 XM_002726772 0003823 // antigen binding // inferred from electronic annotation 1388273_at AW251927 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251927 /DB_XREF=gi:6595518 /DB_XREF=UI-R-BJ0-adn-f-06-0-UI.s1 /CLONE=UI-R-BJ0-adn-f-06-0-UI /FEA=DNA /CNT=9 /TID=Rn.11287.1 /TIER=Stack /STK=6 /UG=Rn.11287 /UG_TITLE=Rat Ly6-A antigen gene, exon 2 AW251927 similar to Ly6-B antigen gene /// lymphocyte antigen 6 complex, locus A-like /// Ly6-C antigen LOC300024 /// Ly6al /// Ly6c 300024 /// 362935 /// 56778 NM_001128099 /// NM_020103 /// XM_001073983 /// XM_216959 1388274_at AA849035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849035 /DB_XREF=gi:2936575 /DB_XREF=EST191797 /CLONE=RLUAJ78 /FEA=DNA /CNT=13 /TID=Rn.11204.1 /TIER=Stack /STK=7 /UG=Rn.11204 /UG_TITLE=Rat Bmyc gene 5-fragment AA849035 brain expressed myelocytomatosis oncogene Bmyc 311807 NM_001013163 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005819 // spindle // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388275_at AW919577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919577 /DB_XREF=gi:8085374 /DB_XREF=EST350881 /CLONE=RGIFZ24 /FEA=DNA /CNT=6 /TID=Rn.24454.1 /TIER=ConsEnd /STK=1 /UG=Rn.24454 /UG_TITLE=Rattus norvegicus T cell receptor beta chain constant region gene, partial cds AW919577 T-cell receptor beta chain Tcrb 24820 0006968 // cellular defense response // inferred from expression pattern 1388276_at BE113430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113430 /DB_XREF=gi:8505535 /DB_XREF=UI-R-BJ1-awl-c-05-0-UI.s1 /CLONE=UI-R-BJ1-awl-c-05-0-UI /FEA=DNA /CNT=14 /TID=Rn.25127.1 /TIER=ConsEnd /STK=0 /UG=Rn.25127 /UG_TITLE=Rattus norvegicus H3 histone gene, complete cds BE113430 histone cluster 1, H3f Hist1h3f 364716 XM_001071516 /// XM_002728495 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388277_at AI029631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029631 /DB_XREF=gi:4299888 /DB_XREF=UI-R-C0-iy-h-08-0-UI.s1 /CLONE=UI-R-C0-iy-h-08-0-UI /FEA=DNA /CNT=5 /TID=Rn.18280.1 /TIER=ConsEnd /STK=0 /UG=Rn.18280 /UG_TITLE=Rat Ig germline C-lambda chain gene C1-region, 3 end AI029631 lambda-chain C1-region-like /// lambda-chain C1-region-like /// similar to immunoglobulin light chain variable region LOC100361706 /// LOC682411 /// RGD1564318 100361706 /// 363828 /// 682411 XM_002724759 /// XM_002727920 0003823 // antigen binding // inferred from electronic annotation 1388278_at X77209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X77209 /DB_XREF=gi:1814002 /FEA=DNA /CNT=3 /TID=Rn.33366.1 /TIER=ConsEnd /STK=0 /UG=Rn.33366 /UG_TITLE=R.norvegicus Hsp70-3 gene /DEF=R.norvegicus Hsp70-3 gene X77209 heat shock protein 1-like Hspa1l 24963 NM_212546 0006950 // response to stress // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1388279_at AF275682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF275682 /DB_XREF=gi:10567750 /FEA=DNA /CNT=2 /TID=Rn.64502.1 /TIER=ConsEnd /STK=0 /UG=Rn.64502 /LL=25221 /UG_GENE=Tdf /UG_TITLE=Sex determining region on Y /DEF=Rattus norvegicus sex-determining region Y protein (Sry3) gene, complete cds AF275682 sex determining region Y Sry 25221 NM_012772 0007530 // sex determination // not recorded /// 0007548 // sex differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030238 // male sex determination // inferred from expression pattern /// 0030238 // male sex determination // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008301 // DNA bending activity // not recorded /// 0019899 // enzyme binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from mutant phenotype 1388280_a_at U53367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U53367 /DB_XREF=gi:1517937 /FEA=DNA /CNT=1 /TID=Rn.10238.2 /TIER=ConsEnd /STK=0 /UG=Rn.10238 /LL=58948 /UG_GENE=Dlgh3 /UG_TITLE=discs, large homolog 3 (Drosophila) /DEF=Rattus norvegicus PSD-95SAP90-related gene 1 (SAP102 isoform2), complete cds U53367 discs, large homolog 3 (Drosophila) Dlg3 58948 NM_031639 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // traceable author statement /// 0030426 // growth cone // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from direct assay /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction 1388281_at AF024712 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF024712 /DB_XREF=gi:3941291 /FEA=DNA /CNT=1 /TID=Rn.44469.1 /TIER=ConsEnd /STK=0 /UG=Rn.44469 /UG_TITLE=Rattus norvegicus MHC class Ib M4 (RT1.M4) pseudogene, complete sequence /DEF=Rattus norvegicus MHC class Ib M4 (RT1.M4) pseudogene, complete sequence AF024712 RT1 class Ib, locus M4 RT1-M4 309584 NM_001168343 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 1388282_s_at U56824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U56824 /DB_XREF=gi:1354757 /FEA=DNA /CNT=1 /TID=Rn.10565.1 /TIER=ConsEnd /STK=0 /UG=Rn.10565 /UG_TITLE=Rattus norvegicus Ly-49.29 antigen mRNA, complete cds /DEF=Rattus norvegicus Ly-49.29 antigen mRNA, complete cds U56824 killer cell lectin-like receptor, subfamily A, member 5 /// Ly49 stimulatory receptor 7 Klra5 /// Ly49s7 297666 /// 494203 NM_001009494 /// NM_198746 0030101 // natural killer cell activation // inferred from mutant phenotype 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1388283_at AB002169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB002169 /DB_XREF=gi:2425164 /FEA=DNA /CNT=1 /TID=Rn.39743.21 /TIER=ConsEnd /STK=0 /UG=Rn.39743 /LL=24737 /UG_GENE=RT1Aw2 /UG_TITLE=RT1 class Ib gene /DEF=Rattus norvegicus RT1.P1 pseudogene for TL antigen AB002169 mCG1051031-like LOC100364485 100364485 XM_002725812 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 1388284_at AB003753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB003753 /DB_XREF=gi:3046870 /FEA=DNA_1 /CNT=1 /TID=Rn.44356.1 /TIER=ConsEnd /STK=0 /UG=Rn.44356 /UG_TITLE=Rattus norvegicus genes for high sulfur protein B2E and high sulfur protein B2F, complete cds /DEF=Rattus norvegicus genes for high sulfur protein B2E and high sulfur protein B2F, complete cds AB003753 keratin associated protein 1-3-like LOC100361571 100361571 XM_002724546 /// XM_002727816 1388285_at X14264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X14264 /DB_XREF=gi:55868 /FEA=DNA /CNT=1 /TID=Rn.44232.1 /TIER=ConsEnd /STK=0 /UG=Rn.44232 /UG_TITLE=R.norvegicus CaMII retropseudogene (clone lambda SC27) /DEF=R.norvegicus CaMII retropseudogene (clone lambda SC27) X14264 1388286_a_at L38482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L38482 /DB_XREF=gi:1020080 /FEA=DNA /CNT=1 /TID=Rn.2427.1 /TIER=ConsEnd /STK=0 /UG=Rn.2427 /UG_TITLE=Rattus norvegicus serine protease gene, complete cds /DEF=Rattus norvegicus serine protease gene, complete cds L38482 cell division cycle 34 homolog (S. cerevisiae) Cdc34 299602 NM_001013103 0000209 // protein polyubiquitination // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0043951 // negative regulation of cAMP-mediated signaling // not recorded /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070848 // response to growth factor stimulus // inferred from expression pattern /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0090261 // positive regulation of inclusion body assembly // inferred from mutant phenotype 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1388287_at M37566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M37566 /DB_XREF=gi:204630 /FEA=DNA /CNT=1 /TID=Rn.44373.1 /TIER=ConsEnd /STK=0 /UG=Rn.44373 /UG_TITLE=Rattus norvegicus homeobox protein (R1b) gene, partial cds /DEF=Rattus norvegicus homeobox protein (R1b) gene, partial cds M37566 homeo box B7 Hoxb7 497985 NM_001017480 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0030099 // myeloid cell differentiation // inferred from electronic annotation /// 0030099 // myeloid cell differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1388288_at X61106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X61106 /DB_XREF=gi:56800 /FEA=DNA /CNT=1 /TID=Rn.44316.1 /TIER=ConsEnd /STK=0 /UG=Rn.44316 /LL=24647 /UG_GENE=Pgy4 /UG_TITLE=P-glycoprotein 4 /DEF=R.norvegicus ORF for P-glycoprotein (3-most exon) containing epitope for P-glycoprotein monoclonal antibody, C219 X61106 solute carrier organic anion transporter family, member 2b1 Slco2b1 140860 NM_080786 0001889 // liver development // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015721 // bile acid and bile salt transport // inferred from direct assay /// 0071718 // sodium-independent icosanoid transport // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0008514 // organic anion transmembrane transporter activity // not recorded /// 0008514 // organic anion transmembrane transporter activity // inferred from electronic annotation /// 0015125 // bile acid transmembrane transporter activity // inferred from direct assay /// 0015347 // sodium-independent organic anion transmembrane transporter activity // inferred from direct assay /// 0015347 // sodium-independent organic anion transmembrane transporter activity // inferred from electronic annotation /// 0015347 // sodium-independent organic anion transmembrane transporter activity // not recorded 1388289_s_at D00577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D00577 /DB_XREF=gi:220739 /FEA=DNA /CNT=1 /TID=Rn.22610.1 /TIER=ConsEnd /STK=0 /UG=Rn.22610 /UG_TITLE=Rattus norvegicus gene for FSH beta-subunit, partial cds /DEF=Rattus norvegicus gene for FSH beta-subunit, partial cds D00577 follicle stimulating hormone, beta polypeptide Fshb 25447 NM_001007597 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0042699 // follicle-stimulating hormone signaling pathway // traceable author statement /// 0060011 // Sertoli cell proliferation // inferred from electronic annotation /// 0060011 // Sertoli cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0016914 // follicle-stimulating hormone complex // traceable author statement 0005179 // hormone activity // inferred from electronic annotation /// 0016913 // follicle-stimulating hormone activity // traceable author statement 1388290_at X72759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X72759 /DB_XREF=gi:495269 /FEA=DNA /CNT=1 /TID=Rn.44233.1 /TIER=ConsEnd /STK=0 /UG=Rn.44233 /UG_TITLE=R.norvegicus cox VIa pseudogene (liver) /DEF=R.norvegicus cox VIa pseudogene (liver) X72759 1388291_at L41558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L41558 /DB_XREF=gi:1161231 /FEA=DNA /CNT=1 /TID=Rn.67078.1 /TIER=ConsEnd /STK=0 /UG=Rn.67078 /UG_TITLE=Rattus norvegicus BB1 gene, complete cds /DEF=Rattus norvegicus BB1 gene, complete cds L41558 1388292_at U91449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U91449 /DB_XREF=gi:4099907 /FEA=DNA /CNT=1 /TID=Rn.44214.1 /TIER=ConsEnd /STK=0 /UG=Rn.44214 /UG_TITLE=Rattus norvegicus potassium channel subunit Kir3.1 type 3 delta gene, alternatively spliced variant, partial cds /DEF=Rattus norvegicus potassium channel subunit Kir3.1 type 3 delta gene, alternatively spliced variant, partial cds U91449 potassium inwardly-rectifying channel, subfamily J, member 3 Kcnj3 50599 NM_031610 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0051602 // response to electrical stimulus // inferred from expression pattern 0009897 // external side of plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030315 // T-tubule // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // not recorded /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015467 // G-protein activated inward rectifier potassium channel activity // inferred from electronic annotation 1388293_at BI288091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288091 /DB_XREF=gi:14944332 /DB_XREF=UI-R-CS0s-cbk-g-04-0-UI.s2 /CLONE=UI-R-CS0s-cbk-g-04-0-UI /FEA=EST /CNT=118 /TID=Rn.37176.2 /TIER=Stack /STK=117 /UG=Rn.37176 /UG_TITLE=Rat heart myosin light chain 2 (MLC2) mRNA, 3 end BI288091 myosin, light polypeptide 2, regulatory, cardiac, slow Myl2 363925 NM_001035252 0060048 // cardiac muscle contraction // inferred from direct assay /// 0060048 // cardiac muscle contraction // inferred from mutant phenotype 0016459 // myosin complex // inferred from electronic annotation /// 0030016 // myofibril // inferred from direct assay /// 0043292 // contractile fiber // inferred from direct assay 0003774 // motor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1388294_at AI176608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176608 /DB_XREF=gi:3727246 /DB_XREF=EST220197 /CLONE=ROVBU47 /FEA=EST /CNT=112 /TID=Rn.3040.1 /TIER=Stack /STK=75 /UG=Rn.3040 /UG_TITLE=ESTs, Moderately similar to DHSD_HUMAN SUCCINATE DEHYDROGENASE (H.sapiens) AI176608 succinate dehydrogenase complex, subunit D, integral membrane protein Sdhd 363061 NM_198788 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006099 // tricarboxylic acid cycle // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005740 // mitochondrial envelope // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005749 // mitochondrial respiratory chain complex II // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000104 // succinate dehydrogenase activity // not recorded /// 0005506 // iron ion binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048039 // ubiquinone binding // inferred from sequence or structural similarity 1388295_s_at AI170571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170571 /DB_XREF=gi:3710611 /DB_XREF=EST216504 /CLONE=RMUAY09 /FEA=EST /CNT=77 /TID=Rn.34398.1 /TIER=Stack /STK=75 /UG=Rn.34398 /UG_TITLE=ESTs AI170571 fibroblast growth factor receptor substrate 3 Frs3 316213 NM_001017382 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005104 // fibroblast growth factor receptor binding // inferred from electronic annotation /// 0005104 // fibroblast growth factor receptor binding // not recorded /// 0005158 // insulin receptor binding // inferred from electronic annotation 1388296_at BF281388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281388 /DB_XREF=gi:11212458 /DB_XREF=EST445979 /CLONE=RGIAE11 /FEA=EST /CNT=94 /TID=Rn.2642.1 /TIER=Stack /STK=68 /UG=Rn.2642 /UG_TITLE=ESTs, Highly similar to RS18_HUMAN 40S RIBOSOMAL PROTEIN S18 (R.norvegicus) BF281388 ribosomal protein S18-like /// ribosomal protein S18 LOC100362298 /// Rps18 100362298 /// 294282 NM_213557 /// XM_002726555 /// XM_002729505 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0006417 // regulation of translation // non-traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // not recorded /// 0015935 // small ribosomal subunit // traceable author statement /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0022627 // cytosolic small ribosomal subunit // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0019843 // rRNA binding // inferred from electronic annotation 1388297_at BM391203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391203 /DB_XREF=gi:18191256 /DB_XREF=UI-R-DY0-ckq-m-11-0-UI.s1 /CLONE=UI-R-DY0-ckq-m-11-0-UI /FEA=EST /CNT=71 /TID=Rn.1421.1 /TIER=Stack /STK=66 /UG=Rn.1421 /UG_TITLE=ESTs, Highly similar to S22655 translation elongation factor eEF-1 gamma chain (H.sapiens) BM391203 eukaryotic translation elongation factor 1 gamma Eef1g 293725 NM_001004223 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0006414 // translational elongation // inferred from electronic annotation /// 0009615 // response to virus // not recorded 0005829 // cytosol // not recorded /// 0005853 // eukaryotic translation elongation factor 1 complex // inferred from electronic annotation 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388298_at BI279044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279044 /DB_XREF=gi:14926483 /DB_XREF=UI-R-CZ0-byi-e-01-0-UI.s1 /CLONE=UI-R-CZ0-byi-e-01-0-UI /FEA=EST /CNT=66 /TID=Rn.6870.1 /TIER=Stack /STK=60 /UG=Rn.6870 /UG_TITLE=ESTs, Highly similar to MYOSIN REGULATORY LIGHT CHAIN 2-A, SMOOTH MUSCLE ISOFORM (R.norvegicus) BI279044 myosin, light chain 9, regulatory Myl9 296313 NM_001100885 0006936 // muscle contraction // not recorded 0016459 // myosin complex // inferred from electronic annotation 0003774 // motor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1388299_at BF406304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406304 /DB_XREF=gi:11394279 /DB_XREF=UI-R-CA1-bjf-h-01-0-UI.s1 /CLONE=UI-R-CA1-bjf-h-01-0-UI /FEA=EST /CNT=58 /TID=Rn.60579.1 /TIER=Stack /STK=58 /UG=Rn.60579 /UG_TITLE=ESTs BF406304 dynein, axonemal, light chain 1 Dnal1 685664 NM_001109477 0005515 // protein binding // inferred from electronic annotation 1388300_at AA892234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892234 /DB_XREF=gi:3019113 /DB_XREF=EST196037 /CLONE=RKIAO03 /FEA=EST /CNT=67 /TID=Rn.1916.1 /TIER=Stack /STK=55 /UG=Rn.1916 /UG_TITLE=ESTs, Moderately similar to microsomal glutathione S-transferase 3 (H.sapiens) AA892234 microsomal glutathione S-transferase 3 Mgst3 289197 NM_001191594 /// XM_001076104 /// XM_213943 0010243 // response to organic nitrogen // inferred from expression pattern 0004602 // glutathione peroxidase activity // inferred from direct assay 1388301_at BI287993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287993 /DB_XREF=gi:14944140 /DB_XREF=UI-R-CX0s-ccw-g-03-0-UI.s1 /CLONE=UI-R-CX0s-ccw-g-03-0-UI /FEA=EST /CNT=57 /TID=Rn.1704.1 /TIER=Stack /STK=54 /UG=Rn.1704 /UG_TITLE=ESTs, Weakly similar to mitochondrial processing peptidase beta (Rattus norvegicus) (R.norvegicus) BI287993 ubiquinol-cytochrome c reductase core protein I Uqcrc1 301011 NM_001004250 0006122 // mitochondrial electron transport, ubiquinol to cytochrome c // inferred from electronic annotation /// 0006122 // mitochondrial electron transport, ubiquinol to cytochrome c // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0014823 // response to activity // inferred from expression pattern /// 0022900 // electron transport chain // inferred from electronic annotation /// 0043279 // response to alkaloid // inferred from expression pattern 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005750 // mitochondrial respiratory chain complex III // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1388302_x_at BI285417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285417 /DB_XREF=gi:14939034 /DB_XREF=UI-R-DB0-byz-h-01-0-UI.s1 /CLONE=UI-R-DB0-byz-h-01-0-UI /FEA=EST /CNT=33 /TID=Rn.9977.2 /TIER=Stack /STK=33 /UG=Rn.9977 /LL=25030 /UG_GENE=Andpro /UG_TITLE=Androgen regulated 20 kDa protein BI285417 androgen regulated 20 kDa protein Andpro 25030 NM_012718 0030521 // androgen receptor signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1388303_at AI598536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598536 /DB_XREF=gi:4607570 /DB_XREF=EST250225 /CLONE=REMDR93 /FEA=EST /CNT=52 /TID=Rn.3934.1 /TIER=Stack /STK=32 /UG=Rn.3934 /UG_TITLE=ESTs, Highly similar to RL26 RAT 60S RIBOSOMAL PROTEIN L26 (R.norvegicus) AI598536 ribosomal protein L26 Rpl26 287417 NM_001105788 0006364 // rRNA processing // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0042273 // ribosomal large subunit biogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388304_at BI281307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281307 /DB_XREF=gi:14930906 /DB_XREF=UI-R-DA0-bzh-h-06-0-UI.s1 /CLONE=UI-R-DA0-bzh-h-06-0-UI /FEA=EST /CNT=39 /TID=Rn.3367.1 /TIER=Stack /STK=32 /UG=Rn.3367 /UG_TITLE=ESTs, Moderately similar to NADH-ubiquinone oxidoreductase subunit CI-SGDH (H.sapiens) BI281307 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5 Ndufb5 294964 NM_001106426 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0005747 // mitochondrial respiratory chain complex I // not recorded 1388305_at AI176666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176666 /DB_XREF=gi:3727304 /DB_XREF=EST220258 /CLONE=ROVBV31 /FEA=EST /CNT=39 /TID=Rn.1714.2 /TIER=Stack /STK=32 /UG=Rn.1714 /LL=64363 /UG_GENE=Araf1 /UG_TITLE=A-raf AI176666 v-raf murine sarcoma 3611 viral oncogene homolog Araf 64363 NM_001033663 /// NM_022532 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // traceable author statement /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005626 // insoluble fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004709 // MAP kinase kinase kinase activity // inferred from direct assay /// 0004709 // MAP kinase kinase kinase activity // traceable author statement /// 0005057 // receptor signaling protein activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388306_at BM383758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383758 /DB_XREF=gi:18183811 /DB_XREF=UI-R-DM1-ckb-b-19-0-UI.s1 /CLONE=UI-R-DM1-ckb-b-19-0-UI /FEA=EST /CNT=34 /TID=Rn.2926.1 /TIER=Stack /STK=32 /UG=Rn.2926 /UG_TITLE=ESTs BM383758 proteasome (prosome, macropain) assembly chaperone 3-like LOC100361517 100361517 XM_002727941 1388307_at BG671458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671458 /DB_XREF=gi:13893557 /DB_XREF=DRNBSA11 /CLONE=DRNBSA11 /FEA=EST /CNT=69 /TID=Rn.2078.1 /TIER=Stack /STK=31 /UG=Rn.2078 /UG_TITLE=ESTs, Highly similar to T46332 hypothetical protein DKFZp434H0413.1 (H.sapiens) BG671458 serine incorporator 1 Serinc1 294421 NM_182951 0006278 // RNA-dependent DNA replication // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006658 // phosphatidylserine metabolic process // inferred from direct assay /// 0006665 // sphingolipid metabolic process // inferred from direct assay /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0015825 // L-serine transport // inferred from direct assay /// 0051347 // positive regulation of transferase activity // inferred from direct assay 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003964 // RNA-directed DNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015194 // L-serine transmembrane transporter activity // inferred from direct assay 1388308_at AA800576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800576 /DB_XREF=gi:2863531 /DB_XREF=EST190073 /CLONE=RLUAB44 /FEA=EST /CNT=35 /TID=Rn.4104.1 /TIER=Stack /STK=31 /UG=Rn.4104 /UG_TITLE=ESTs AA800576 hypothetical protein LOC687090 LOC687090 687090 NM_001110318 0008021 // synaptic vesicle // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 1388309_at BG378885 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378885 /DB_XREF=gi:13303357 /DB_XREF=UI-R-CV1-bvu-a-05-0-UI.s1 /CLONE=UI-R-CV1-bvu-a-05-0-UI /FEA=EST /CNT=35 /TID=Rn.3123.1 /TIER=Stack /STK=31 /UG=Rn.3123 /UG_TITLE=ESTs, Highly similar to HIGH MOBILITY GROUP PROTEIN HMG-Y (M.musculus) BG378885 1388310_at AI012372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012372 /DB_XREF=gi:3226204 /DB_XREF=EST206823 /CLONE=RPLAW36 /FEA=EST /CNT=98 /TID=Rn.4113.1 /TIER=Stack /STK=7 /UG=Rn.4113 /UG_TITLE=ESTs, Highly similar to SUI1 MOUSE PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG (M.musculus) AI012372 eukaryotic translation initiation factor 1 Eif1 287703 NM_001105837 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred from electronic annotation 1388311_at AA799550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799550 /DB_XREF=gi:2862505 /DB_XREF=EST189047 /CLONE=RHEAC44 /FEA=EST /CNT=48 /TID=Rn.3393.1 /TIER=Stack /STK=30 /UG=Rn.3393 /UG_TITLE=ESTs, Weakly similar to AF116272 1 T-cell activation protein (H.sapiens) AA799550 Mof4 family associated protein 1 Mrfap1 282585 NM_001009264 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006013 // mannose metabolic process // inferred from electronic annotation /// 0006013 // mannose metabolic process // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004559 // alpha-mannosidase activity // inferred from electronic annotation /// 0004559 // alpha-mannosidase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0015923 // mannosidase activity // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation 1388312_at BI274487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274487 /DB_XREF=gi:14885445 /DB_XREF=UI-R-CW0-bwj-d-10-0-UI.s1 /CLONE=UI-R-CW0-bwj-d-10-0-UI /FEA=EST /CNT=32 /TID=Rn.8652.1 /TIER=Stack /STK=30 /UG=Rn.8652 /UG_TITLE=ESTs, Moderately similar to JC4365 arginine--tRNA ligase (H.sapiens) BI274487 1388313_at BM389289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389289 /DB_XREF=gi:18189342 /DB_XREF=UI-R-DZ0-cko-f-18-0-UI.s1 /CLONE=UI-R-DZ0-cko-f-18-0-UI /FEA=EST /CNT=43 /TID=Rn.28396.1 /TIER=Stack /STK=29 /UG=Rn.28396 /UG_TITLE=ESTs, Highly similar to 40S RIBOSOMAL PROTEIN S25 (R.norvegicus) BM389289 ribosomal protein s25 Rps25 122799 NM_001005528 0000028 // ribosomal small subunit assembly // inferred from mutant phenotype /// 0006414 // translational elongation // not recorded 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0005840 // ribosome // not recorded /// 0015935 // small ribosomal subunit // not recorded /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0022627 // cytosolic small ribosomal subunit // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388314_at BF281178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281178 /DB_XREF=gi:11212332 /DB_XREF=EST445853 /CLONE=RGIAC23 /FEA=EST /CNT=46 /TID=Rn.4120.1 /TIER=Stack /STK=29 /UG=Rn.4120 /UG_TITLE=ESTs, Weakly similar to HG17 RAT NONHISTONE CHROMOSOMAL PROTEIN HMG-17 (R.norvegicus) BF281178 high-mobility group nucleosome binding domain 1 Hmgn1 360704 NM_001013184 0000720 // pyrimidine dimer repair by nucleotide-excision repair // inferred from electronic annotation /// 0000720 // pyrimidine dimer repair by nucleotide-excision repair // not recorded /// 0006283 // transcription-coupled nucleotide-excision repair // inferred from electronic annotation /// 0006283 // transcription-coupled nucleotide-excision repair // not recorded /// 0006325 // chromatin organization // inferred from electronic annotation /// 0006325 // chromatin organization // not recorded /// 0010224 // response to UV-B // inferred from electronic annotation /// 0010224 // response to UV-B // not recorded /// 0010225 // response to UV-C // inferred from electronic annotation /// 0010225 // response to UV-C // not recorded /// 0048597 // post-embryonic camera-type eye morphogenesis // inferred from electronic annotation /// 0048597 // post-embryonic camera-type eye morphogenesis // not recorded /// 0050678 // regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050678 // regulation of epithelial cell proliferation // not recorded 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded 1388315_at BI282661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282661 /DB_XREF=gi:14933652 /DB_XREF=UI-R-CW0s-ccd-f-09-0-UI.s1 /CLONE=UI-R-CW0s-ccd-f-09-0-UI /FEA=EST /CNT=35 /TID=Rn.3377.1 /TIER=Stack /STK=29 /UG=Rn.3377 /UG_TITLE=ESTs BI282661 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11 Ndufb11 299310 NM_001106756 0005739 // mitochondrion // not recorded /// 0005747 // mitochondrial respiratory chain complex I // not recorded 1388316_at BG668062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668062 /DB_XREF=gi:13889984 /DB_XREF=DRABUE09 /CLONE=DRABUE09 /FEA=EST /CNT=38 /TID=Rn.4025.1 /TIER=Stack /STK=29 /UG=Rn.4025 /UG_TITLE=ESTs BG668062 RGD1566320 RGD1566320 296207 NM_001106520 0005739 // mitochondrion // not recorded 1388317_at BE110655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110655 /DB_XREF=gi:8502760 /DB_XREF=UI-R-BJ1-avu-e-03-0-UI.s1 /CLONE=UI-R-BJ1-avu-e-03-0-UI /FEA=EST /CNT=36 /TID=Rn.24120.1 /TIER=Stack /STK=28 /UG=Rn.24120 /UG_TITLE=ESTs BE110655 1388318_at BI279760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279760 /DB_XREF=gi:14927885 /DB_XREF=UI-R-CU0s-cbq-e-02-0-UI.s1 /CLONE=UI-R-CU0s-cbq-e-02-0-UI /FEA=EST /CNT=31 /TID=Rn.3369.1 /TIER=Stack /STK=28 /UG=Rn.3369 /UG_TITLE=ESTs, Highly similar to PHOSPHOGLYCERATE KINASE, TESTIS SPECIFIC (R.norvegicus) BI279760 phosphoglycerate kinase 1 Pgk1 24644 NM_053291 0005975 // carbohydrate metabolic process // inferred from direct assay /// 0006094 // gluconeogenesis // inferred from direct assay /// 0006094 // gluconeogenesis // inferred from mutant phenotype /// 0006096 // glycolysis // inferred from direct assay /// 0006096 // glycolysis // inferred from mutant phenotype /// 0006096 // glycolysis // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0016310 // phosphorylation // inferred from sequence or structural similarity 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004618 // phosphoglycerate kinase activity // inferred from direct assay /// 0004618 // phosphoglycerate kinase activity // inferred from mutant phenotype /// 0004618 // phosphoglycerate kinase activity // not recorded /// 0004618 // phosphoglycerate kinase activity // inferred from sequence or structural similarity /// 0004618 // phosphoglycerate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0043531 // ADP binding // inferred from direct assay 1388319_at BE108642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108642 /DB_XREF=gi:8500747 /DB_XREF=UI-R-CA0-axg-f-12-0-UI.s1 /CLONE=UI-R-CA0-axg-f-12-0-UI /FEA=EST /CNT=28 /TID=Rn.51560.1 /TIER=Stack /STK=28 /UG=Rn.51560 /UG_TITLE=ESTs BE108642 1388320_at AI412117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412117 /DB_XREF=gi:4255621 /DB_XREF=EST240411 /CLONE=RKIEG37 /FEA=EST /CNT=37 /TID=Rn.3857.1 /TIER=Stack /STK=27 /UG=Rn.3857 /UG_TITLE=ESTs, Weakly similar to AMYLOID-LIKE PROTEIN 2 PRECURSOR (R.norvegicus) AI412117 serine peptidase inhibitor, Kunitz type, 2 Spint2 292770 NM_001082549 /// NM_199087 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation 1388321_at BG378108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378108 /DB_XREF=gi:13302580 /DB_XREF=UI-R-CV1-bvo-a-07-0-UI.s1 /CLONE=UI-R-CV1-bvo-a-07-0-UI /FEA=EST /CNT=39 /TID=Rn.3787.1 /TIER=Stack /STK=27 /UG=Rn.3787 /UG_TITLE=ESTs, Weakly similar to 2113200F ribosomal protein S9 (H.sapiens) BG378108 IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast) Imp3 315697 NM_001108152 0006364 // rRNA processing // inferred from electronic annotation /// 0006364 // rRNA processing // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019843 // rRNA binding // inferred from electronic annotation 1388322_at AI170773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170773 /DB_XREF=gi:3710813 /DB_XREF=EST216712 /CLONE=RMUBB33 /FEA=EST /CNT=34 /TID=Rn.36878.3 /TIER=Stack /STK=27 /UG=Rn.36878 /LL=64640 /UG_GENE=Rpl30 /UG_TITLE=ribosomal protein L30 AI170773 eukaryotic translation initiation factor 4 gamma, 1 Eif4g1 287986 XM_001060756 /// XM_002724743 /// XM_002727923 /// XM_213569 0006446 // regulation of translational initiation // not recorded /// 0016070 // RNA metabolic process // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0016281 // eukaryotic translation initiation factor 4F complex // inferred from direct assay /// 0016281 // eukaryotic translation initiation factor 4F complex // inferred from mutant phenotype 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008190 // eukaryotic initiation factor 4E binding // inferred from mutant phenotype /// 0008190 // eukaryotic initiation factor 4E binding // inferred from physical interaction 1388323_at BG381033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381033 /DB_XREF=gi:13305505 /DB_XREF=UI-R-CT0-bug-d-12-0-UI.s1 /CLONE=UI-R-CT0-bug-d-12-0-UI /FEA=EST /CNT=31 /TID=Rn.1099.1 /TIER=Stack /STK=27 /UG=Rn.1099 /UG_TITLE=ESTs, Moderately similar to NUEM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT PRECURSOR (H.sapiens) BG381033 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9 Ndufa9 362440 NM_001100752 0006810 // transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0022900 // electron transport chain // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005747 // mitochondrial respiratory chain complex I // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded /// 0031966 // mitochondrial membrane // not recorded /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003954 // NADH dehydrogenase activity // inferred from electronic annotation /// 0003954 // NADH dehydrogenase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388324_at BG668463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668463 /DB_XREF=gi:13890385 /DB_XREF=DRACED06 /CLONE=DRACED06 /FEA=EST /CNT=34 /TID=Rn.3861.1 /TIER=Stack /STK=26 /UG=Rn.3861 /UG_TITLE=ESTs, Weakly similar to T43198 nitrilaseFhit protein - Caenorhabditis elegans (C.elegans) BG668463 nitrilase 1 Nit1 289222 NM_001082580 /// NM_182668 0006807 // nitrogen compound metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0016787 // hydrolase activity // inferred from electronic annotation /// 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation 1388325_at BF281358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281358 /DB_XREF=gi:11212428 /DB_XREF=EST445949 /CLONE=RGIAD64 /FEA=EST /CNT=34 /TID=Rn.3669.1 /TIER=Stack /STK=26 /UG=Rn.3669 /UG_TITLE=ESTs, Highly similar to VATD_MOUSE VACUOLAR ATP SYNTHASE SUBUNIT D (V-ATPASE D SUBUNIT) (VACUOLAR PROTON PUMP D SUBUNIT) (V-ATPASE 28 KDA ACCESSORY PROTEIN) (M.musculus) BF281358 ATPase, H+ transporting, lysosomal V1 subunit D Atp6v1d 299159 NM_199386 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016471 // vacuolar proton-transporting V-type ATPase complex // inferred from electronic annotation /// 0016471 // vacuolar proton-transporting V-type ATPase complex // not recorded /// 0033178 // proton-transporting two-sector ATPase complex, catalytic domain // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 1388326_at AA799479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799479 /DB_XREF=gi:2862434 /DB_XREF=EST188976 /CLONE=RHEAB52 /FEA=EST /CNT=37 /TID=Rn.3373.1 /TIER=Stack /STK=26 /UG=Rn.3373 /UG_TITLE=ESTs, Highly similar to NUIM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE 23 KD SUBUNIT PRECURSOR (H.sapiens) AA799479 NADH dehydrogenase (ubiquinone) Fe-S protein 8 Ndufs8 293652 NM_001106322 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0019684 // photosynthesis, light reaction // inferred from electronic annotation /// 0032981 // mitochondrial respiratory chain complex I assembly // inferred from electronic annotation /// 0032981 // mitochondrial respiratory chain complex I assembly // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005747 // mitochondrial respiratory chain complex I // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003954 // NADH dehydrogenase activity // inferred from electronic annotation /// 0003954 // NADH dehydrogenase activity // not recorded /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from electronic annotation /// 0008137 // NADH dehydrogenase (ubiquinone) activity // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016651 // oxidoreductase activity, acting on NADH or NADPH // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 1388327_at AI232357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232357 /DB_XREF=gi:3816237 /DB_XREF=EST229045 /CLONE=RKICA63 /FEA=EST /CNT=30 /TID=Rn.1164.1 /TIER=Stack /STK=26 /UG=Rn.1164 /UG_TITLE=ESTs, Weakly similar to T26088 hypothetical protein W02B12.7 - Caenorhabditis elegans (C.elegans) AI232357 CDGSH iron sulfur domain 1 Cisd1 294362 NM_001106385 0043457 // regulation of cellular respiration // inferred from electronic annotation /// 0043457 // regulation of cellular respiration // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation 1388328_at BM392200 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392200 /DB_XREF=gi:18192253 /DB_XREF=UI-R-DO1-ckp-o-08-0-UI.s1 /CLONE=UI-R-DO1-ckp-o-08-0-UI /FEA=EST /CNT=33 /TID=Rn.125.1 /TIER=Stack /STK=26 /UG=Rn.125 /UG_TITLE=ESTs, Weakly similar to UNRI_MOUSE UNR-INTERACTING PROTEIN (SERINE-THREONINE KINASE RECEPTOR-ASSOCIATED PROTEIN) (M.musculus) BM392200 eukaryotic translation initiation factor 3, subunit I Eif3i 682390 NM_001115035 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from sequence or structural similarity 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from direct assay 1388329_at BI280282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280282 /DB_XREF=gi:14928910 /DB_XREF=UI-R-DE0-cag-b-03-0-UI.s1 /CLONE=UI-R-DE0-cag-b-03-0-UI /FEA=EST /CNT=29 /TID=Rn.26857.1 /TIER=Stack /STK=26 /UG=Rn.26857 /UG_TITLE=ESTs, Weakly similar to K1CU RAT KERATIN, TYPE I CYTOSKELETAL 21 (R.norvegicus) BI280282 keratin 13 Krt13 287699 NM_001004021 0009314 // response to radiation // inferred from expression pattern /// 0043587 // tongue morphogenesis // inferred from expression pattern /// 0071300 // cellular response to retinoic acid // inferred from expression pattern 0005882 // intermediate filament // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388330_at BM384958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384958 /DB_XREF=gi:18185011 /DB_XREF=UI-R-CN1-cjl-l-06-0-UI.s2 /CLONE=UI-R-CN1-cjl-l-06-0-UI /FEA=EST /CNT=28 /TID=Rn.807.1 /TIER=Stack /STK=26 /UG=Rn.807 /UG_TITLE=ESTs BM384958 vitamin K epoxide reductase complex, subunit 1 Vkorc1 309004 NM_203335 0010243 // response to organic nitrogen // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0030193 // regulation of blood coagulation // inferred from mutant phenotype /// 0042373 // vitamin K metabolic process // inferred from electronic annotation /// 0042373 // vitamin K metabolic process // not recorded /// 0046677 // response to antibiotic // inferred from direct assay /// 0050820 // positive regulation of coagulation // inferred from electronic annotation /// 0050820 // positive regulation of coagulation // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0047057 // vitamin-K-epoxide reductase (warfarin-sensitive) activity // inferred from direct assay /// 0047057 // vitamin-K-epoxide reductase (warfarin-sensitive) activity // not recorded /// 0047057 // vitamin-K-epoxide reductase (warfarin-sensitive) activity // inferred from electronic annotation /// 0047058 // vitamin-K-epoxide reductase (warfarin-insensitive) activity // inferred from direct assay 1388331_at BG057543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG057543 /DB_XREF=gi:12523138 /DB_XREF=nag14c04.x1 /CLONE=IMAGE:4176007 /FEA=EST /CNT=39 /TID=Rn.3980.1 /TIER=Stack /STK=25 /UG=Rn.3980 /UG_TITLE=ESTs, Weakly similar to HS9B RAT HEAT SHOCK PROTEIN HSP 90-BETA (R.norvegicus) BG057543 heat shock protein 90kDa beta (Grp94), member 1 Hsp90b1 362862 NM_001012197 0001666 // response to hypoxia // not recorded /// 0006457 // protein folding // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0030433 // ER-associated protein catabolic process // not recorded /// 0030433 // ER-associated protein catabolic process // inferred from sequence or structural similarity /// 0031247 // actin rod assembly // not recorded /// 0043666 // regulation of phosphoprotein phosphatase activity // not recorded /// 0071318 // cellular response to ATP // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // not recorded /// 0005829 // cytosol // not recorded /// 0042470 // melanosome // inferred from electronic annotation /// 0044459 // plasma membrane part // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0019903 // protein phosphatase binding // not recorded /// 0046790 // virion binding // not recorded /// 0050750 // low-density lipoprotein receptor binding // not recorded /// 0051082 // unfolded protein binding // inferred from electronic annotation 1388332_at AA799542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799542 /DB_XREF=gi:2862497 /DB_XREF=EST189039 /CLONE=RHEAC34 /FEA=EST /CNT=38 /TID=Rn.980.1 /TIER=Stack /STK=25 /UG=Rn.980 /UG_TITLE=ESTs AA799542 1388333_at BF291171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291171 /DB_XREF=gi:11222241 /DB_XREF=EST455762 /CLONE=RGIIJ63 /FEA=EST /CNT=30 /TID=Rn.8068.1 /TIER=Stack /STK=25 /UG=Rn.8068 /UG_TITLE=ESTs, Highly similar to ring-box 1; ring-box protein 1 (Mus musculus) (M.musculus) BF291171 ring-box 1 Rbx1 300084 NM_001034135 0016567 // protein ubiquitination // not recorded /// 0030163 // protein catabolic process // not recorded /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0045116 // protein neddylation // inferred from electronic annotation /// 0045116 // protein neddylation // not recorded 0005829 // cytosol // not recorded /// 0019005 // SCF ubiquitin ligase complex // inferred from electronic annotation /// 0019005 // SCF ubiquitin ligase complex // not recorded /// 0030891 // VCB complex // inferred from direct assay /// 0031463 // Cul3-RING ubiquitin ligase complex // not recorded /// 0031464 // Cul4A-RING ubiquitin ligase complex // not recorded /// 0031465 // Cul4B-RING ubiquitin ligase complex // not recorded 0004842 // ubiquitin-protein ligase activity // inferred by curator /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred by curator /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019788 // NEDD8 ligase activity // inferred from electronic annotation /// 0019788 // NEDD8 ligase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1388334_at AI176849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176849 /DB_XREF=gi:3727487 /DB_XREF=EST220452 /CLONE=ROVBX67 /FEA=EST /CNT=30 /TID=Rn.7457.1 /TIER=Stack /STK=25 /UG=Rn.7457 /UG_TITLE=ESTs AI176849 SEC14-like 1 (S. cerevisiae) Sec14l1 360668 NM_001108309 1388335_at BI285865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285865 /DB_XREF=gi:14939940 /DB_XREF=UI-R-CX0s-ccv-g-06-0-UI.s1 /CLONE=UI-R-CX0s-ccv-g-06-0-UI /FEA=EST /CNT=29 /TID=Rn.3375.1 /TIER=Stack /STK=25 /UG=Rn.3375 /UG_TITLE=ESTs BI285865 transgelin 2 Tagln2 304983 NM_001013127 0007517 // muscle organ development // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388336_at AI411514 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411514 /DB_XREF=gi:4255018 /DB_XREF=EST239808 /CLONE=RKIEK15 /FEA=EST /CNT=34 /TID=Rn.3798.1 /TIER=Stack /STK=25 /UG=Rn.3798 /UG_TITLE=ESTs AI411514 1388337_at AI102495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102495 /DB_XREF=gi:3704668 /DB_XREF=EST211784 /CLONE=REMBO34 /FEA=EST /CNT=28 /TID=Rn.2738.1 /TIER=Stack /STK=25 /UG=Rn.2738 /UG_TITLE=ESTs, Moderately similar to PNPH MOUSE PURINE NUCLEOSIDE PHOSPHORYLASE (M.musculus) AI102495 nucleoside phosphorylase Np 290029 NM_001106031 0001916 // positive regulation of T cell mediated cytotoxicity // not recorded /// 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // not recorded /// 0006148 // inosine catabolic process // not recorded /// 0006149 // deoxyinosine catabolic process // not recorded /// 0006161 // deoxyguanosine catabolic process // not recorded /// 0006183 // GTP biosynthetic process // not recorded /// 0006738 // nicotinamide riboside catabolic process // not recorded /// 0006955 // immune response // not recorded /// 0009116 // nucleoside metabolic process // inferred from electronic annotation /// 0010332 // response to gamma radiation // not recorded /// 0034356 // NAD biosynthesis via nicotinamide riboside salvage pathway // not recorded /// 0034418 // urate biosynthetic process // not recorded /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0042278 // purine nucleoside metabolic process // inferred from direct assay /// 0042278 // purine nucleoside metabolic process // not recorded /// 0042493 // response to drug // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043101 // purine salvage // traceable author statement /// 0045579 // positive regulation of B cell differentiation // not recorded /// 0045739 // positive regulation of DNA repair // not recorded /// 0046070 // dGTP metabolic process // not recorded /// 0046115 // guanosine catabolic process // not recorded /// 0046638 // positive regulation of alpha-beta T cell differentiation // not recorded /// 0070970 // interleukin-2 secretion // not recorded 0005576 // extracellular region // inferred from direct assay /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0001882 // nucleoside binding // not recorded /// 0002060 // purine binding // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004731 // purine-nucleoside phosphorylase activity // inferred from direct assay /// 0004731 // purine-nucleoside phosphorylase activity // inferred from electronic annotation /// 0004731 // purine-nucleoside phosphorylase activity // not recorded /// 0008144 // drug binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016763 // transferase activity, transferring pentosyl groups // inferred from electronic annotation /// 0042301 // phosphate binding // not recorded 1388338_at BI278637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278637 /DB_XREF=gi:14925681 /DB_XREF=UI-R-DB0-bza-a-09-0-UI.s1 /CLONE=UI-R-DB0-bza-a-09-0-UI /FEA=EST /CNT=27 /TID=Rn.34374.1 /TIER=Stack /STK=25 /UG=Rn.34374 /UG_TITLE=ESTs BI278637 protein phosphatase 2A activator, regulatory subunit 4 Ppp2r4 362102 NM_001108577 0032515 // negative regulation of phosphoprotein phosphatase activity // not recorded /// 0032516 // positive regulation of phosphoprotein phosphatase activity // not recorded /// 0035307 // positive regulation of protein dephosphorylation // not recorded /// 0035308 // negative regulation of protein dephosphorylation // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043666 // regulation of phosphoprotein phosphatase activity // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0034704 // calcium channel complex // not recorded 0005102 // receptor binding // not recorded /// 0005524 // ATP binding // not recorded /// 0008160 // protein tyrosine phosphatase activator activity // not recorded /// 0008601 // protein phosphatase type 2A regulator activity // not recorded /// 0016887 // ATPase activity // not recorded /// 0019211 // phosphatase activator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0051721 // protein phosphatase 2A binding // not recorded 1388339_at BE112895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112895 /DB_XREF=gi:8505000 /DB_XREF=UI-R-BJ1-awa-b-01-0-UI.s1 /CLONE=UI-R-BJ1-awa-b-01-0-UI /FEA=EST /CNT=44 /TID=Rn.2945.1 /TIER=Stack /STK=9 /UG=Rn.2945 /UG_TITLE=ESTs, Weakly similar to mammary transforming protein (M.musculus) BE112895 phosphoprotein enriched in astrocytes 15A Pea15a 364052 NM_001013231 0006810 // transport // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0043278 // response to morphine // inferred from expression pattern /// 0046325 // negative regulation of glucose import // inferred from electronic annotation /// 0046325 // negative regulation of glucose import // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388340_at BF281153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281153 /DB_XREF=gi:11212307 /DB_XREF=EST445828 /CLONE=RGIAB79 /FEA=EST /CNT=34 /TID=Rn.7233.1 /TIER=Stack /STK=24 /UG=Rn.7233 /UG_TITLE=ESTs, Moderately similar to Y101_HUMAN HYPOTHETICAL PROTEIN KIAA0101 (H.sapiens) BF281153 NS5A (hepatitis C virus) transactivated protein 9 Ns5atp9 300795 NM_201418 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation 1388341_at BI285671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285671 /DB_XREF=gi:14939551 /DB_XREF=UI-R-CT0s-cas-b-07-0-UI.s1 /CLONE=UI-R-CT0s-cas-b-07-0-UI /FEA=EST /CNT=31 /TID=Rn.6391.1 /TIER=Stack /STK=24 /UG=Rn.6391 /UG_TITLE=ESTs, Moderately similar to RGP1 MOUSE RAN-GTPASE ACTIVATING PROTEIN 1 (M.musculus) BI285671 RAN GTPase activating protein 1 Rangap1 362965 NM_001012199 0000776 // kinetochore // inferred from electronic annotation /// 0000776 // kinetochore // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388342_at BI291344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291344 /DB_XREF=gi:14950796 /DB_XREF=UI-R-CV2-cgo-h-10-0-UI.s1 /CLONE=UI-R-CV2-cgo-h-10-0-UI /FEA=EST /CNT=28 /TID=Rn.7937.1 /TIER=Stack /STK=24 /UG=Rn.7937 /UG_TITLE=ESTs, Weakly similar to ERF MOUSE ETS-DOMAIN TRANSCRIPTION FACTOR ERF (M.musculus) BI291344 Ets variant 3 Etv3 295297 NM_001106450 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0017053 // transcriptional repressor complex // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1388343_at AI575943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575943 /DB_XREF=gi:4560319 /DB_XREF=UI-R-Y0-uz-d-11-0-UI.s1 /CLONE=UI-R-Y0-uz-d-11-0-UI /FEA=EST /CNT=28 /TID=Rn.6569.1 /TIER=Stack /STK=24 /UG=Rn.6569 /UG_TITLE=ESTs, Moderately similar to NB8M_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE B18 SUBUNIT (COMPLEX I-B18) (CI-B18) (CELL ADHESION PROTEIN SQM1) (H.sapiens) AI575943 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7 Ndufb7 361385 NM_001108442 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0005747 // mitochondrial respiratory chain complex I // not recorded 0003954 // NADH dehydrogenase activity // inferred from electronic annotation /// 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from electronic annotation 1388344_at BI283112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283112 /DB_XREF=gi:14934534 /DB_XREF=UI-R-CU0s-cca-b-06-0-UI.s1 /CLONE=UI-R-CU0s-cca-b-06-0-UI /FEA=EST /CNT=26 /TID=Rn.1506.1 /TIER=Stack /STK=24 /UG=Rn.1506 /UG_TITLE=ESTs, Weakly similar to S26689 hypothetical protein hc1 - mouse (M.musculus) BI283112 SAP domain containing ribonucleoprotein Sarnp 362819 NM_001033070 0006350 // transcription // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1388345_at AI599882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599882 /DB_XREF=gi:4608930 /DB_XREF=EST251585 /CLONE=REMEL51 /FEA=EST /CNT=26 /TID=Rn.3840.1 /TIER=Stack /STK=24 /UG=Rn.3840 /UG_TITLE=ESTs AI599882 1388346_at BM386531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386531 /DB_XREF=gi:18186584 /DB_XREF=UI-R-CN1-cjg-c-02-0-UI.s1 /CLONE=UI-R-CN1-cjg-c-02-0-UI /FEA=EST /CNT=28 /TID=Rn.14607.1 /TIER=Stack /STK=24 /UG=Rn.14607 /UG_TITLE=ESTs, Weakly similar to T23923 hypothetical protein R05D11.5 - Caenorhabditis elegans (C.elegans) BM386531 transmembrane protein 208 Tmem208 291963 NM_001106179 1388347_at AI233210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233210 /DB_XREF=gi:3817090 /DB_XREF=EST229898 /CLONE=RKIDC24 /FEA=EST /CNT=25 /TID=Rn.3321.1 /TIER=Stack /STK=24 /UG=Rn.3321 /UG_TITLE=ESTs, Moderately similar to LY6E_MOUSE LYMPHOCYTE ANTIGEN LY-6E PRECURSOR (THYMIC SHARED ANTIGEN-1) (TSA-1) (STEM CELL ANTIGEN 2) (M.musculus) AI233210 lymphocyte antigen 6 complex, locus E Ly6e 362934 NM_001017467 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0030325 // adrenal gland development // inferred from electronic annotation /// 0030325 // adrenal gland development // not recorded /// 0035265 // organ growth // inferred from electronic annotation /// 0035265 // organ growth // not recorded /// 0042415 // norepinephrine metabolic process // inferred from electronic annotation /// 0042415 // norepinephrine metabolic process // not recorded /// 0048242 // epinephrine secretion // inferred from electronic annotation /// 0048242 // epinephrine secretion // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded 1388348_at BI278590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278590 /DB_XREF=gi:14925587 /DB_XREF=UI-R-CW0-bxn-e-06-0-UI.s1 /CLONE=UI-R-CW0-bxn-e-06-0-UI /FEA=EST /CNT=42 /TID=Rn.4243.1 /TIER=Stack /STK=23 /UG=Rn.4243 /UG_TITLE=ESTs BI278590 1388349_at AA799557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799557 /DB_XREF=gi:2862512 /DB_XREF=EST189054 /CLONE=RHEAC52 /FEA=EST /CNT=31 /TID=Rn.3905.1 /TIER=Stack /STK=23 /UG=Rn.3905 /UG_TITLE=ESTs, Highly similar to KCRS RAT CREATINE KINASE, SARCOMERIC MITOCHONDRIAL PRECURSOR (R.norvegicus) AA799557 creatine kinase, mitochondrial 2, sarcomeric Ckmt2 688698 NM_001127652 0046314 // phosphocreatine biosynthetic process // traceable author statement 0005739 // mitochondrion // traceable author statement /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030017 // sarcomere // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004111 // creatine kinase activity // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation 1388350_at BG377475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377475 /DB_XREF=gi:13301947 /DB_XREF=UI-R-CU0-bvd-b-09-0-UI.s1 /CLONE=UI-R-CU0-bvd-b-09-0-UI /FEA=EST /CNT=34 /TID=Rn.6344.1 /TIER=Stack /STK=23 /UG=Rn.6344 /UG_TITLE=ESTs BG377475 peroxisomal biogenesis factor 19 Pex19 289233 NM_001107375 /// NM_001134777 0007031 // peroxisome organization // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 1388351_at BM384128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384128 /DB_XREF=gi:18184181 /DB_XREF=UI-R-DZ0-cks-j-23-0-UI.s1 /CLONE=UI-R-DZ0-cks-j-23-0-UI /FEA=EST /CNT=30 /TID=Rn.28242.1 /TIER=Stack /STK=23 /UG=Rn.28242 /UG_TITLE=ESTs, Highly similar to HSPC014 (H.sapiens) BM384128 proteasome maturation protein Pomp 288455 NM_001100942 0000502 // proteasome complex // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation 1388352_at BI296716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296716 /DB_XREF=gi:14961421 /DB_XREF=UI-R-CV2-cgv-e-04-0-UI.s1 /CLONE=UI-R-CV2-cgv-e-04-0-UI /FEA=EST /CNT=30 /TID=Rn.4306.1 /TIER=Stack /STK=23 /UG=Rn.4306 /UG_TITLE=ESTs, Weakly similar to I38333 ARD1 N-acetyl transferase homolog (H.sapiens) BI296716 N-acetyltransferase 5 Nat5 362228 NM_001108595 0008152 // metabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1388353_at BI296168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296168 /DB_XREF=gi:14960339 /DB_XREF=UI-R-DK0-cex-b-05-0-UI.s1 /CLONE=UI-R-DK0-cex-b-05-0-UI /FEA=EST /CNT=31 /TID=Rn.9485.1 /TIER=Stack /STK=23 /UG=Rn.9485 /UG_TITLE=ESTs, Highly similar to PLS1 MOUSE PROLIFERATION-ASSOCIATED PROTEIN 1 (M.musculus) BI296168 proliferation-associated 2G4 Pa2g4 288778 NM_001004206 0009987 // cellular process // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0031625 // ubiquitin protein ligase binding // not recorded 1388354_at BE349703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE349703 /DB_XREF=gi:9261556 /DB_XREF=hq41g11.x1 /CLONE=IMAGE:3121988 /FEA=EST /CNT=26 /TID=Rn.9250.1 /TIER=Stack /STK=23 /UG=Rn.9250 /UG_TITLE=ESTs, Highly similar to U520_HUMAN U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 200 KDA HELICASE (U5 SNRNP-SPECIFIC 200 KDA PROTEIN) (U5-200KD) (H.sapiens) BE349703 activating signal cointegrator 1 complex subunit 3-like 1 Ascc3l1 296126 NM_001037766 0008380 // RNA splicing // inferred from electronic annotation 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005682 // U5 snRNP // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation 1388355_at BF396644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396644 /DB_XREF=gi:11381620 /DB_XREF=UI-R-BS2-bea-e-03-0-UI.s1 /CLONE=UI-R-BS2-bea-e-03-0-UI /FEA=EST /CNT=25 /TID=Rn.20694.1 /TIER=Stack /STK=23 /UG=Rn.20694 /UG_TITLE=ESTs, Weakly similar to U2af50-P1 (Drosophila melanogaster) (D.melanogaster) BF396644 RNA binding motif protein 17 Rbm17 291295 NM_001013058 0005622 // intracellular // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388356_at AI406499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406499 /DB_XREF=gi:4250003 /DB_XREF=EST234785 /CLONE=RBRDL51 /FEA=EST /CNT=27 /TID=Rn.1053.1 /TIER=Stack /STK=23 /UG=Rn.1053 /UG_TITLE=ESTs, Weakly similar to B Chain B, Solution Structure Of The C-Terminal Negative Regulatory Domain Of P53 In A Complex With Ca2+-Bound S100b(Bb) (R.norvegicus) AI406499 S100 calcium binding protein A16 S100a16 361991 NM_001108557 0051592 // response to calcium ion // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1388357_at BI282972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282972 /DB_XREF=gi:14934266 /DB_XREF=UI-R-CW0s-ccf-e-03-0-UI.s1 /CLONE=UI-R-CW0s-ccf-e-03-0-UI /FEA=EST /CNT=24 /TID=Rn.7784.1 /TIER=Stack /STK=23 /UG=Rn.7784 /UG_TITLE=ESTs BI282972 similar to GTL2, imprinted maternally expressed untranslated RGD1566401 500717 XR_008690 /// XR_086281 1388358_at AW252650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252650 /DB_XREF=gi:6596241 /DB_XREF=UI-R-BJ0-aeb-a-05-0-UI.s1 /CLONE=UI-R-BJ0-aeb-a-05-0-UI /FEA=EST /CNT=23 /TID=Rn.35200.1 /TIER=Stack /STK=23 /UG=Rn.35200 /UG_TITLE=ESTs, Highly similar to B Chain B, Three-Dimensional Structure Of Human Electron Transfer Flavoprotein To 2.1 A Resolution (H.sapiens) AW252650 electron-transfer-flavoprotein, beta polypeptide Etfb 292845 NM_001004220 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0009055 // electron carrier activity // inferred from electronic annotation 1388359_at AI599478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599478 /DB_XREF=gi:4608526 /DB_XREF=EST251181 /CLONE=REMDX66 /FEA=EST /CNT=32 /TID=Rn.3654.1 /TIER=Stack /STK=22 /UG=Rn.3654 /UG_TITLE=ESTs AI599478 eukaryotic translation initiation factor 4, gamma 2 Eif4g2 361628 NM_001017374 0006446 // regulation of translational initiation // not recorded /// 0016070 // RNA metabolic process // inferred from electronic annotation /// 0045948 // positive regulation of translational initiation // not recorded 0005737 // cytoplasm // not recorded /// 0016281 // eukaryotic translation initiation factor 4F complex // not recorded 0003743 // translation initiation factor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008135 // translation factor activity, nucleic acid binding // not recorded 1388360_at BE110600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110600 /DB_XREF=gi:8502705 /DB_XREF=UI-R-BJ1-avt-h-05-0-UI.s1 /CLONE=UI-R-BJ1-avt-h-05-0-UI /FEA=EST /CNT=42 /TID=Rn.7669.1 /TIER=Stack /STK=22 /UG=Rn.7669 /UG_TITLE=ESTs, Highly similar to T10052 aminopeptidase (EC 3.4.11.-) - mouse (M.musculus) BE110600 aminopeptidase puromycin sensitive Npepps 50558 NM_080395 0006508 // proteolysis // inferred from electronic annotation 0004177 // aminopeptidase activity // inferred from direct assay /// 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1388361_at BI303856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303856 /DB_XREF=gi:14980136 /DB_XREF=UI-R-DS0-cjd-k-24-0-UI.s1 /CLONE=UI-R-DS0-cjd-k-24-0-UI /FEA=EST /CNT=29 /TID=Rn.2867.1 /TIER=Stack /STK=22 /UG=Rn.2867 /UG_TITLE=ESTs, Moderately similar to JE0381 NADH dehydrogenase (H.sapiens) BI303856 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10 Ndufb10 681418 NM_001109443 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0005747 // mitochondrial respiratory chain complex I // not recorded 0005515 // protein binding // not recorded 1388362_at BM390197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390197 /DB_XREF=gi:18190250 /DB_XREF=UI-R-CN1-cjq-c-01-0-UI.s1 /CLONE=UI-R-CN1-cjq-c-01-0-UI /FEA=EST /CNT=28 /TID=Rn.14681.1 /TIER=Stack /STK=22 /UG=Rn.14681 /UG_TITLE=ESTs, Weakly similar to T32886 hypothetical protein C34B2.8 - Caenorhabditis elegans (C.elegans) BM390197 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13 /// YjeF N-terminal domain containing 3 Ndufa13 /// Yjefn3 314759 /// 498608 XM_001071564 /// XM_001080448 /// XM_235062 /// XM_573886 0006800 // oxygen and reactive oxygen species metabolic process // not recorded /// 0006915 // apoptosis // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0017148 // negative regulation of translation // not recorded /// 0030262 // apoptotic nuclear change // not recorded /// 0030308 // negative regulation of cell growth // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0005746 // mitochondrial respiratory chain // not recorded /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0031966 // mitochondrial membrane // not recorded 0003954 // NADH dehydrogenase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008137 // NADH dehydrogenase (ubiquinone) activity // not recorded 1388363_at BM389226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389226 /DB_XREF=gi:18189279 /DB_XREF=UI-R-DZ0-cko-i-14-0-UI.s1 /CLONE=UI-R-DZ0-cko-i-14-0-UI /FEA=EST /CNT=26 /TID=Rn.17077.1 /TIER=Stack /STK=22 /UG=Rn.17077 /UG_TITLE=ESTs, Highly similar to A47318 RNA-binding protein Raly - mouse (M.musculus) BM389226 RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse)) Raly 296301 NM_001011958 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1388364_at BG381650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381650 /DB_XREF=gi:13306122 /DB_XREF=UI-R-CT0-bud-g-08-0-UI.s1 /CLONE=UI-R-CT0-bud-g-08-0-UI /FEA=EST /CNT=29 /TID=Rn.1261.1 /TIER=Stack /STK=22 /UG=Rn.1261 /UG_TITLE=ESTs, Moderately similar to NADH:ubiquinone oxidoreductase NDUFS3 subunit (H.sapiens) BG381650 NADH dehydrogenase (ubiquinone) Fe-S protein 3 Ndufs3 295923 NM_001106489 0006800 // oxygen and reactive oxygen species metabolic process // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0019684 // photosynthesis, light reaction // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0031966 // mitochondrial membrane // not recorded 0003954 // NADH dehydrogenase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016651 // oxidoreductase activity, acting on NADH or NADPH // inferred from electronic annotation 1388365_at BI276424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276424 /DB_XREF=gi:14921305 /DB_XREF=UI-R-CX0-bwq-b-03-0-UI.s1 /CLONE=UI-R-CX0-bwq-b-03-0-UI /FEA=EST /CNT=25 /TID=Rn.55.1 /TIER=Stack /STK=22 /UG=Rn.55 /UG_TITLE=ESTs, Highly similar to VA0D_MOUSE VACUOLAR ATP SYNTHASE SUBUNIT D (V-ATPASE D SUBUNIT) (VACUOLAR PROTON PUMP D SUBUNIT) (V-ATPASE AC39 SUBUNIT) (V-ATPASE 40 KDA ACCESSORY PROTEIN) (P39) (PHYSOPHILIN) (M.musculus) BI276424 ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1 Atp6v0d1 291969 NM_001011927 0006200 // ATP catabolic process // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // not recorded /// 0034220 // ion transmembrane transport // not recorded 0005769 // early endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0008021 // synaptic vesicle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016471 // vacuolar proton-transporting V-type ATPase complex // not recorded /// 0019717 // synaptosome // inferred from direct assay /// 0033177 // proton-transporting two-sector ATPase complex, proton-transporting domain // inferred from electronic annotation /// 0033179 // proton-transporting V-type ATPase, V0 domain // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008553 // hydrogen-exporting ATPase activity, phosphorylative mechanism // inferred from electronic annotation /// 0008553 // hydrogen-exporting ATPase activity, phosphorylative mechanism // not recorded /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1388366_at BI275903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275903 /DB_XREF=gi:14920295 /DB_XREF=UI-R-CX0-bxh-h-05-0-UI.s1 /CLONE=UI-R-CX0-bxh-h-05-0-UI /FEA=EST /CNT=24 /TID=Rn.13113.1 /TIER=Stack /STK=22 /UG=Rn.13113 /UG_TITLE=ESTs BI275903 mitochondrial ribosomal protein L4 Mrpl4 363023 NM_001108754 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0019843 // rRNA binding // inferred from electronic annotation 1388367_at AI178241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178241 /DB_XREF=gi:3728879 /DB_XREF=EST221906 /CLONE=RPLCN89 /FEA=EST /CNT=29 /TID=Rn.4068.1 /TIER=Stack /STK=22 /UG=Rn.4068 /UG_TITLE=ESTs AI178241 polymerase (DNA-directed), epsilon 4 (p12 subunit) Pole4 362385 NM_001108634 0005622 // intracellular // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1388368_at BM389891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389891 /DB_XREF=gi:18189944 /DB_XREF=UI-R-CN1-cji-f-24-0-UI.s1 /CLONE=UI-R-CN1-cji-f-24-0-UI /FEA=EST /CNT=23 /TID=Rn.34860.1 /TIER=Stack /STK=22 /UG=Rn.34860 /UG_TITLE=ESTs BM389891 mediator complex subunit 28 Med28 305391 NM_001107217 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388369_at BM385547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385547 /DB_XREF=gi:18185600 /DB_XREF=UI-R-DM1-ckd-i-19-0-UI.s1 /CLONE=UI-R-DM1-ckd-i-19-0-UI /FEA=EST /CNT=23 /TID=Rn.15337.1 /TIER=Stack /STK=22 /UG=Rn.15337 /UG_TITLE=ESTs BM385547 transmembrane emp24 protein transport domain containing 9 Tmed9 361207 NM_001009703 0006810 // transport // inferred from electronic annotation 0005793 // ER-Golgi intermediate compartment // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1388370_at AA945706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945706 /DB_XREF=gi:3105622 /DB_XREF=EST201205 /CLONE=RLUAS18 /FEA=EST /CNT=22 /TID=Rn.6670.1 /TIER=Stack /STK=22 /UG=Rn.6670 /UG_TITLE=ESTs AA945706 cyclin I Ccni 289500 NM_001105998 1388371_at AI008784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008784 /DB_XREF=gi:3222616 /DB_XREF=EST203235 /CLONE=REMBD22 /FEA=EST /CNT=22 /TID=Rn.11760.1 /TIER=Stack /STK=22 /UG=Rn.11760 /UG_TITLE=ESTs, Moderately similar to G19P_HUMAN PROTEIN KINASE C SUBSTRATE, 80 KD PROTEIN, HEAVY CHAIN (H.sapiens) AI008784 protein kinase C substrate 80K-H Prkcsh 300445 NM_001106806 0051291 // protein heterooligomerization // inferred from physical interaction 0017177 // alpha-glucosidase II complex // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0004558 // alpha-glucosidase activity // inferred from electronic annotation /// 0005080 // protein kinase C binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1388372_at AW914118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW914118 /DB_XREF=gi:8079791 /DB_XREF=EST345422 /CLONE=RGIAA68 /FEA=EST /CNT=42 /TID=Rn.3458.1 /TIER=Stack /STK=21 /UG=Rn.3458 /UG_TITLE=ESTs, Highly similar to 60S RIBOSOMAL PROTEIN L35 (R.norvegicus) AW914118 ribosomal protein L35 Rpl35 296709 NM_212511 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388373_at BI289063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289063 /DB_XREF=gi:14946269 /DB_XREF=UI-R-DK0-cfe-b-11-0-UI.s1 /CLONE=UI-R-DK0-cfe-b-11-0-UI /FEA=EST /CNT=29 /TID=Rn.2326.1 /TIER=Stack /STK=21 /UG=Rn.2326 /UG_TITLE=ESTs BI289063 adiponectin receptor 1 Adipor1 289036 NM_207587 0007165 // signal transduction // not recorded /// 0009755 // hormone-mediated signaling pathway // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0019395 // fatty acid oxidation // inferred from electronic annotation /// 0019395 // fatty acid oxidation // not recorded /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0033210 // leptin-mediated signaling pathway // inferred from mutant phenotype /// 0033211 // adiponectin-mediated signaling pathway // inferred from mutant phenotype /// 0046427 // positive regulation of JAK-STAT cascade // inferred from mutant phenotype /// 0046628 // positive regulation of insulin receptor signaling pathway // inferred from mutant phenotype 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0044459 // plasma membrane part // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0042562 // hormone binding // inferred from electronic annotation /// 0042562 // hormone binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1388374_at AI412011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412011 /DB_XREF=gi:4255515 /DB_XREF=EST240305 /CLONE=RKIEJ50 /FEA=EST /CNT=27 /TID=Rn.3738.1 /TIER=Stack /STK=21 /UG=Rn.3738 /UG_TITLE=ESTs AI412011 rCG63619-like LOC100359995 100359995 XM_002724732 /// XM_002727901 1388375_at AI234096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234096 /DB_XREF=gi:4135958 /DB_XREF=EST230784 /CLONE=RLUCV16 /FEA=EST /CNT=29 /TID=Rn.3833.1 /TIER=Stack /STK=21 /UG=Rn.3833 /UG_TITLE=ESTs, Highly similar to transcription factor TFEB (M.musculus) AI234096 1388376_at AI235498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235498 /DB_XREF=gi:3829004 /DB_XREF=EST232060 /CLONE=ROVCS60 /FEA=EST /CNT=28 /TID=Rn.2190.1 /TIER=Stack /STK=21 /UG=Rn.2190 /UG_TITLE=ESTs, Weakly similar to C04H5.1.p (Caenorhabditis elegans) (C.elegans) AI235498 similar to RIKEN cDNA 0610038D11 RGD1309710 293700 NM_001106330 0018364 // peptidyl-glutamine methylation // inferred from electronic annotation /// 0018364 // peptidyl-glutamine methylation // not recorded 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008276 // protein methyltransferase activity // inferred from electronic annotation /// 0008276 // protein methyltransferase activity // not recorded 1388377_at AW142717 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142717 /DB_XREF=gi:6162616 /DB_XREF=EST292969 /CLONE=RGIAT28 /FEA=EST /CNT=27 /TID=Rn.6104.1 /TIER=Stack /STK=21 /UG=Rn.6104 /UG_TITLE=ESTs, Highly similar to COPA_HUMAN COATOMER ALPHA SUBUNIT (H.sapiens) AW142717 coatomer protein complex subunit alpha Copa 304978 NM_001134540 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0030117 // membrane coat // inferred from electronic annotation /// 0030126 // COPI vesicle coat // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1388378_at AI412236 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412236 /DB_XREF=gi:4255740 /DB_XREF=EST240531 /CLONE=RKIEK77 /FEA=EST /CNT=29 /TID=Rn.4207.1 /TIER=Stack /STK=21 /UG=Rn.4207 /UG_TITLE=ESTs, Highly similar to translation intiation factor eIF-3 p110 subunit (H.sapiens) AI412236 eukaryotic translation initiation factor 3, subunit C Eif3c 293484 NM_001100662 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // not recorded /// 0006413 // translational initiation // inferred from sequence or structural similarity /// 0006413 // translational initiation // inferred from electronic annotation /// 0045948 // positive regulation of translational initiation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from electronic annotation /// 0005852 // eukaryotic translation initiation factor 3 complex // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from sequence or structural similarity 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003743 // translation initiation factor activity // not recorded /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded 1388379_at AI172465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172465 /DB_XREF=gi:3712505 /DB_XREF=EST218476 /CLONE=RMUCA20 /FEA=EST /CNT=26 /TID=Rn.4176.1 /TIER=Stack /STK=21 /UG=Rn.4176 /UG_TITLE=ESTs AI172465 protein tyrosine phosphatase, non-receptor type 11 Ptpn11 25622 NM_001177593 /// NM_013088 0000077 // DNA damage checkpoint // inferred from electronic annotation /// 0000077 // DNA damage checkpoint // not recorded /// 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // not recorded /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0009755 // hormone-mediated signaling pathway // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0009967 // positive regulation of signal transduction // inferred from electronic annotation /// 0009967 // positive regulation of signal transduction // not recorded /// 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0035265 // organ growth // inferred from electronic annotation /// 0035265 // organ growth // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0042445 // hormone metabolic process // inferred from electronic annotation /// 0042445 // hormone metabolic process // not recorded /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042593 // glucose homeostasis // not recorded /// 0046676 // negative regulation of insulin secretion // inferred from electronic annotation /// 0046676 // negative regulation of insulin secretion // not recorded /// 0046825 // regulation of protein export from nucleus // inferred from electronic annotation /// 0046825 // regulation of protein export from nucleus // not recorded /// 0046887 // positive regulation of hormone secretion // inferred from electronic annotation /// 0046887 // positive regulation of hormone secretion // not recorded /// 0046888 // negative regulation of hormone secretion // not recorded /// 0046888 // negative regulation of hormone secretion // inferred from electronic annotation /// 0048011 // nerve growth factor receptor signaling pathway // inferred from electronic annotation /// 0048011 // nerve growth factor receptor signaling pathway // not recorded /// 0048609 // multicellular organismal reproductive process // inferred from electronic annotation /// 0048609 // multicellular organismal reproductive process // not recorded /// 0051463 // negative regulation of cortisol secretion // inferred from electronic annotation /// 0051463 // negative regulation of cortisol secretion // not recorded /// 0060125 // negative regulation of growth hormone secretion // inferred from electronic annotation /// 0060125 // negative regulation of growth hormone secretion // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0043234 // protein complex // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // not recorded /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004726 // non-membrane spanning protein tyrosine phosphatase activity // not recorded /// 0005158 // insulin receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0043274 // phospholipase binding // inferred from direct assay /// 0043560 // insulin receptor substrate binding // inferred from physical interaction /// 0051428 // peptide hormone receptor binding // inferred from electronic annotation /// 0051428 // peptide hormone receptor binding // not recorded 1388380_at BI278122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278122 /DB_XREF=gi:14924662 /DB_XREF=UI-R-CZ0-byd-f-02-0-UI.s1 /CLONE=UI-R-CZ0-byd-f-02-0-UI /FEA=EST /CNT=24 /TID=Rn.12611.1 /TIER=Stack /STK=21 /UG=Rn.12611 /UG_TITLE=ESTs, Highly similar to CG51_HUMAN PROTEIN CGI-51 (H.sapiens) BI278122 sorting and assembly machinery component 50 homolog (S. cerevisiae) Samm50 300111 NM_001004241 0070096 // mitochondrial outer membrane translocase complex assembly // not recorded 0000299 // integral to membrane of membrane fraction // not recorded /// 0001401 // mitochondrial sorting and assembly machinery complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019867 // outer membrane // inferred from electronic annotation 1388381_at AI411198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411198 /DB_XREF=gi:4254702 /DB_XREF=EST239492 /CLONE=RKIER46 /FEA=EST /CNT=25 /TID=Rn.19934.1 /TIER=Stack /STK=21 /UG=Rn.19934 /UG_TITLE=ESTs, Weakly similar to NUCL RAT NUCLEOLIN (R.norvegicus) AI411198 eukaryotic translation initiation factor 3, subunit G Eif3g 298700 NM_001013095 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // not recorded /// 0006413 // translational initiation // inferred from sequence or structural similarity /// 0006413 // translational initiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from sequence or structural similarity /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // not recorded /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388382_at AI407017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407017 /DB_XREF=gi:4250521 /DB_XREF=EST235305 /CLONE=ROVDV20 /FEA=EST /CNT=23 /TID=Rn.1901.1 /TIER=Stack /STK=21 /UG=Rn.1901 /UG_TITLE=ESTs AI407017 similar to NICE-3 LOC361985 361985 NM_001014174 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation 1388383_at AI412740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412740 /DB_XREF=gi:4256244 /DB_XREF=EST241039 /CLONE=RBRDT10 /FEA=EST /CNT=23 /TID=Rn.1705.1 /TIER=Stack /STK=21 /UG=Rn.1705 /UG_TITLE=ESTs AI412740 1388384_at AI407618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407618 /DB_XREF=gi:4251122 /DB_XREF=EST235908 /CLONE=ROVEA89 /FEA=EST /CNT=23 /TID=Rn.12991.1 /TIER=Stack /STK=21 /UG=Rn.12991 /UG_TITLE=ESTs AI407618 similar to RUN and SH3 domain-containing protein 2 LOC684259 684259 XR_085837 1388385_at BG371710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371710 /DB_XREF=gi:13268247 /DB_XREF=UI-R-CV0-brh-c-08-0-UI.s1 /CLONE=UI-R-CV0-brh-c-08-0-UI /FEA=EST /CNT=22 /TID=Rn.19713.1 /TIER=Stack /STK=21 /UG=Rn.19713 /UG_TITLE=ESTs, Weakly similar to CRBA RAT BETA CRYSTALLIN A1 (R.norvegicus) BG371710 crystallin, beta A2 Cryba2 286925 NM_173140 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1388386_at AA799822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799822 /DB_XREF=gi:2862777 /DB_XREF=EST189319 /CLONE=RHEAF78 /FEA=EST /CNT=26 /TID=Rn.6239.1 /TIER=Stack /STK=21 /UG=Rn.6239 /UG_TITLE=ESTs AA799822 chromatin modifying protein 1A Chmp1a 365024 NM_001083313 0007076 // mitotic chromosome condensation // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // not recorded /// 0016458 // gene silencing // not recorded /// 0045014 // negative regulation of transcription by glucose // not recorded /// 0045749 // negative regulation of S phase of mitotic cell cycle // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0000794 // condensed nuclear chromosome // not recorded /// 0005769 // early endosome // not recorded /// 0005815 // microtubule organizing center // not recorded /// 0012505 // endomembrane system // not recorded /// 0016363 // nuclear matrix // not recorded 0005515 // protein binding // not recorded /// 0019904 // protein domain specific binding // not recorded 1388387_at BI275880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275880 /DB_XREF=gi:14920244 /DB_XREF=UI-R-CX0-bxh-f-06-0-UI.s1 /CLONE=UI-R-CX0-bxh-f-06-0-UI /FEA=EST /CNT=21 /TID=Rn.6512.1 /TIER=Stack /STK=21 /UG=Rn.6512 /UG_TITLE=ESTs BI275880 UBA domain containing 1 Ubac1 362087 NM_001007742 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388388_at AI179127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179127 /DB_XREF=gi:3729765 /DB_XREF=EST222811 /CLONE=RSPCC19 /FEA=EST /CNT=21 /TID=Rn.783.2 /TIER=Stack /STK=21 /UG=Rn.783 /LL=25181 /UG_GENE=Bgn /UG_TITLE=Small proteoglycan I (biglycan), bone (BSPG1) (bonecartilage proteclycan 1 precursor) AI179127 male-enhanced antigen 1 Mea1 685131 NM_001044286 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388389_at BF282620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282620 /DB_XREF=gi:11213690 /DB_XREF=EST447211 /CLONE=RGIDQ88 /FEA=EST /CNT=38 /TID=Rn.8476.1 /TIER=Stack /STK=20 /UG=Rn.8476 /UG_TITLE=ESTs BF282620 septin 2 Sept2 117515 NM_057148 0002036 // regulation of L-glutamate transport // inferred from electronic annotation /// 0002036 // regulation of L-glutamate transport // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0032880 // regulation of protein localization // inferred from electronic annotation /// 0032880 // regulation of protein localization // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0051301 // cell division // inferred from electronic annotation 0000145 // exocyst // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0019717 // synaptosome // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0031105 // septin complex // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0042995 // cell projection // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0030234 // enzyme regulator activity // inferred from electronic annotation /// 0030234 // enzyme regulator activity // not recorded /// 0032947 // protein complex scaffold // inferred from electronic annotation /// 0032947 // protein complex scaffold // not recorded 1388390_at AI231784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231784 /DB_XREF=gi:3815664 /DB_XREF=EST228472 /CLONE=RHECO24 /FEA=EST /CNT=27 /TID=Rn.6908.1 /TIER=Stack /STK=20 /UG=Rn.6908 /UG_TITLE=ESTs, Highly similar to translation initiation factor eIF3 p40 subunit (H.sapiens) AI231784 eukaryotic translation initiation factor 3, subunit H Eif3h 299899 NM_198751 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // not recorded /// 0006413 // translational initiation // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from sequence or structural similarity /// 0043234 // protein complex // inferred from direct assay 0003743 // translation initiation factor activity // not recorded /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0032403 // protein complex binding // inferred from direct assay 1388391_at AA996544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996544 /DB_XREF=gi:4280311 /DB_XREF=UI-R-C0-hi-a-12-0-UI.s1 /CLONE=UI-R-C0-hi-a-12-0-UI /FEA=EST /CNT=26 /TID=Rn.3640.1 /TIER=Stack /STK=20 /UG=Rn.3640 /UG_TITLE=ESTs, Highly similar to NIMM MOUSE NADH-UBIQUINONE OXIDOREDUCTASE MWFE SUBUNIT (M.musculus) AA996544 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1 Ndufa1 363441 NM_001108813 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005747 // mitochondrial respiratory chain complex I // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // not recorded 1388392_at BI274159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274159 /DB_XREF=gi:14884819 /DB_XREF=UI-R-CW0-bwf-f-10-0-UI.s1 /CLONE=UI-R-CW0-bwf-f-10-0-UI /FEA=EST /CNT=26 /TID=Rn.894.1 /TIER=Stack /STK=20 /UG=Rn.894 /UG_TITLE=ESTs BI274159 Tax1 (human T-cell leukemia virus type I) binding protein 3 Tax1bp3 360564 NM_001025419 0007266 // Rho protein signal transduction // inferred from sequence or structural similarity /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1388393_at BM385031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385031 /DB_XREF=gi:18185084 /DB_XREF=UI-R-CN1-cjm-o-22-0-UI.s2 /CLONE=UI-R-CN1-cjm-o-22-0-UI /FEA=EST /CNT=35 /TID=Rn.7869.1 /TIER=Stack /STK=20 /UG=Rn.7869 /UG_TITLE=ESTs, Moderately similar to S32567 A4 protein (H.sapiens) BM385031 proteolipid protein 2 (colonic epithelium-enriched) Plp2 302562 NM_207601 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019956 // chemokine binding // inferred from electronic annotation /// 0019956 // chemokine binding // not recorded 1388394_at BI282672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282672 /DB_XREF=gi:14933676 /DB_XREF=UI-R-CW0s-ccd-g-10-0-UI.s1 /CLONE=UI-R-CW0s-ccd-g-10-0-UI /FEA=EST /CNT=28 /TID=Rn.8645.1 /TIER=Stack /STK=20 /UG=Rn.8645 /UG_TITLE=ESTs, Highly similar to SYA_HUMAN ALANYL-TRNA SYNTHETASE (H.sapiens) BI282672 alanyl-tRNA synthetase Aars 292023 NM_001100517 0001942 // hair follicle development // not recorded /// 0006400 // tRNA modification // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006419 // alanyl-tRNA aminoacylation // inferred from direct assay /// 0006419 // alanyl-tRNA aminoacylation // inferred from electronic annotation /// 0006419 // alanyl-tRNA aminoacylation // not recorded /// 0006457 // protein folding // not recorded /// 0021680 // cerebellar Purkinje cell layer development // not recorded /// 0030968 // endoplasmic reticulum unfolded protein response // not recorded /// 0034620 // cellular response to unfolded protein // not recorded /// 0043039 // tRNA aminoacylation // inferred from electronic annotation /// 0043200 // response to amino acid stimulus // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043588 // skin development // not recorded /// 0050885 // neuromuscular process controlling balance // not recorded /// 0050905 // neuromuscular process // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0000049 // tRNA binding // inferred from physical interaction /// 0000049 // tRNA binding // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0002161 // aminoacyl-tRNA editing activity // not recorded /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004813 // alanine-tRNA ligase activity // inferred from direct assay /// 0004813 // alanine-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from physical interaction /// 0016597 // amino acid binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation /// 0016876 // ligase activity, forming aminoacyl-tRNA and related compounds // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388395_at AI406939 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406939 /DB_XREF=gi:4250443 /DB_XREF=EST235227 /CLONE=ROVDU77 /FEA=EST /CNT=24 /TID=Rn.1040.1 /TIER=Stack /STK=20 /UG=Rn.1040 /UG_TITLE=ESTs, Highly similar to G0S2 MOUSE PUTATIVE LYMPHOCYTE G0G1 SWITCH PROTEIN 2 (M.musculus) AI406939 G0/G1switch 2 G0s2 289388 NM_001009632 1388396_at BI275932 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275932 /DB_XREF=gi:14920350 /DB_XREF=UI-R-CX0-bxi-b-10-0-UI.s1 /CLONE=UI-R-CX0-bxi-b-10-0-UI /FEA=EST /CNT=25 /TID=Rn.3716.1 /TIER=Stack /STK=20 /UG=Rn.3716 /UG_TITLE=ESTs, Weakly similar to T34021 protein kinase SK2 - rat (R.norvegicus) BI275932 serine/threonine kinase 25 (STE20 homolog, yeast) Stk25 373542 NM_184049 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1388397_at BI281160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281160 /DB_XREF=gi:14930616 /DB_XREF=UI-R-CT0s-cat-a-08-0-UI.s1 /CLONE=UI-R-CT0s-cat-a-08-0-UI /FEA=EST /CNT=23 /TID=Rn.9598.1 /TIER=Stack /STK=20 /UG=Rn.9598 /UG_TITLE=ESTs, Weakly similar to T15543 hypothetical protein C18A3.3 - Caenorhabditis elegans (C.elegans) BI281160 EBNA1 binding protein 2 Ebna1bp2 114021 NM_001008721 0005515 // protein binding // not recorded 1388398_at BI282024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282024 /DB_XREF=gi:14932364 /DB_XREF=UI-R-CU0s-cbv-e-08-0-UI.s1 /CLONE=UI-R-CU0s-cbv-e-08-0-UI /FEA=EST /CNT=22 /TID=Rn.7303.1 /TIER=Stack /STK=20 /UG=Rn.7303 /UG_TITLE=ESTs, Highly similar to RS4_HUMAN 40S RIBOSOMAL PROTEIN S4, X ISOFORM (R.norvegicus) BI282024 ribosomal protein S4, Y-linked 2 Rps4y2 690845 NM_001109612 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation 1388399_at BE106597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106597 /DB_XREF=gi:8498699 /DB_XREF=UI-R-BO1-asp-g-10-0-UI.s1 /CLONE=UI-R-BO1-asp-g-10-0-UI /FEA=EST /CNT=22 /TID=Rn.11677.1 /TIER=Stack /STK=20 /UG=Rn.11677 /UG_TITLE=ESTs, Moderately similar to A54602 microtubule-associated serinethreonine protein kinase MAST205 - mouse (M.musculus) BE106597 microtubule associated serine/threonine kinase 2 Mast2 313819 NM_001108005 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0045075 // regulation of interleukin-12 biosynthetic process // not recorded /// 0048515 // spermatid differentiation // not recorded 0015630 // microtubule cytoskeleton // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008017 // microtubule binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019902 // phosphatase binding // not recorded 1388400_at BG375350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375350 /DB_XREF=gi:13299822 /DB_XREF=UI-R-CV1-bsz-d-06-0-UI.s1 /CLONE=UI-R-CV1-bsz-d-06-0-UI /FEA=EST /CNT=29 /TID=Rn.2427.2 /TIER=Stack /STK=20 /UG=Rn.2427 /UG_TITLE=Rattus norvegicus serine protease gene, complete cds BG375350 cell division cycle 34 homolog (S. cerevisiae) Cdc34 299602 NM_001013103 0000209 // protein polyubiquitination // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0043951 // negative regulation of cAMP-mediated signaling // not recorded /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070848 // response to growth factor stimulus // inferred from expression pattern /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0090261 // positive regulation of inclusion body assembly // inferred from mutant phenotype 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1388401_at BI296155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296155 /DB_XREF=gi:14960312 /DB_XREF=UI-R-DK0-cex-a-03-0-UI.s1 /CLONE=UI-R-DK0-cex-a-03-0-UI /FEA=EST /CNT=22 /TID=Rn.1761.1 /TIER=Stack /STK=20 /UG=Rn.1761 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BI296155 filamin, beta Flnb 306204 NM_001107288 0007519 // skeletal muscle tissue development // not recorded 0001725 // stress fiber // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0005925 // focal adhesion // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388402_at AI175019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175019 /DB_XREF=gi:3725657 /DB_XREF=EST218536 /CLONE=RMUCB06 /FEA=EST /CNT=21 /TID=Rn.2950.1 /TIER=Stack /STK=20 /UG=Rn.2950 /UG_TITLE=ESTs AI175019 transmembrane protein 134 Tmem134 361695 NM_001078647 /// NM_001078648 1388403_at AI172491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172491 /DB_XREF=gi:3712531 /DB_XREF=EST218504 /CLONE=RMUCA50 /FEA=EST /CNT=21 /TID=Rn.3490.1 /TIER=Stack /STK=20 /UG=Rn.3490 /UG_TITLE=ESTs, Weakly similar to ISOCITRATE DEHYDROGENASE (R.norvegicus) AI172491 isocitrate dehydrogenase 2 (NADP+), mitochondrial Idh2 361596 NM_001014161 0006097 // glyoxylate cycle // inferred from electronic annotation /// 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006102 // isocitrate metabolic process // inferred from sequence or structural similarity /// 0006102 // isocitrate metabolic process // inferred from electronic annotation /// 0006103 // 2-oxoglutarate metabolic process // inferred from sequence or structural similarity /// 0008152 // metabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004450 // isocitrate dehydrogenase (NADP+) activity // not recorded /// 0004450 // isocitrate dehydrogenase (NADP+) activity // inferred from sequence or structural similarity /// 0004450 // isocitrate dehydrogenase (NADP+) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation 1388404_at AA799724 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799724 /DB_XREF=gi:4131432 /DB_XREF=EST189221 /CLONE=RHEAE52 /FEA=EST /CNT=21 /TID=Rn.6228.1 /TIER=Stack /STK=19 /UG=Rn.6228 /UG_TITLE=ESTs, Highly similar to RPA9_MOUSE DNA-DIRECTED RNA POLYMERASE I 16 KDA POLYPEPTIDE (RPA16) (M.musculus) AA799724 RNA polymerase 1-3 Rpo1-3 360762 NM_001037787 0006350 // transcription // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1388405_at BI294780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294780 /DB_XREF=gi:14957568 /DB_XREF=UI-R-DK0-cec-a-10-0-UI.s1 /CLONE=UI-R-DK0-cec-a-10-0-UI /FEA=EST /CNT=21 /TID=Rn.6646.1 /TIER=Stack /STK=19 /UG=Rn.6646 /UG_TITLE=ESTs, Moderately similar to S68176 TOG protein (H.sapiens) BI294780 cytoskeleton associated protein 5 Ckap5 311191 XM_001068790 /// XM_230282 0007051 // spindle organization // not recorded /// 0030951 // establishment or maintenance of microtubule cytoskeleton polarity // not recorded /// 0050658 // RNA transport // inferred from direct assay /// 0051297 // centrosome organization // not recorded 0000930 // gamma-tubulin complex // not recorded /// 0005813 // centrosome // not recorded /// 0005829 // cytosol // not recorded /// 0015630 // microtubule cytoskeleton // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388406_at AI412090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412090 /DB_XREF=gi:4255594 /DB_XREF=EST240384 /CLONE=RKIEJ76 /FEA=EST /CNT=23 /TID=Rn.13255.1 /TIER=Stack /STK=19 /UG=Rn.13255 /UG_TITLE=ESTs AI412090 N-acetyltransferase 15 (GCN5-related, putative) Nat15 363545 NM_001014226 0008152 // metabolic process // inferred from electronic annotation 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1388407_at AI008077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008077 /DB_XREF=gi:3221909 /DB_XREF=EST202528 /CLONE=REMAS62 /FEA=EST /CNT=21 /TID=Rn.55109.4 /TIER=Stack /STK=19 /UG=Rn.55109 /LL=79246 /UG_GENE=Htr3a /UG_TITLE=5-Hydroxytryptamine (serotonin) receptor 3A AI008077 family with sequence similarity 195, member B Fam195b 360677 NM_001108311 1388408_at AA800199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800199 /DB_XREF=gi:2863154 /DB_XREF=EST189696 /CLONE=RHEAM36 /FEA=EST /CNT=20 /TID=Rn.2990.1 /TIER=Stack /STK=19 /UG=Rn.2990 /UG_TITLE=ESTs, Weakly similar to B39066 proline-rich protein 15 - rat (R.norvegicus) AA800199 proline rich 13 Prr13 363004 NM_001008379 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1388409_at AW142595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142595 /DB_XREF=gi:6162494 /DB_XREF=EST292847 /CLONE=RGIAQ30 /FEA=EST /CNT=33 /TID=Rn.7550.1 /TIER=Stack /STK=7 /UG=Rn.7550 /UG_TITLE=ESTs, Weakly similar to T46397 hypothetical protein DKFZp434K0920.1 (H.sapiens) AW142595 zinc finger CCCH-type containing 7B Zc3h7b 315158 NM_001130695 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388410_at AI170679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170679 /DB_XREF=gi:3710719 /DB_XREF=EST216615 /CLONE=RMUAZ84 /FEA=EST /CNT=23 /TID=Rn.3415.1 /TIER=Stack /STK=19 /UG=Rn.3415 /UG_TITLE=ESTs, Highly similar to UDP-glucose pyrophosphorylase 2; UTP-glucose-1-phosphate uridyltransferase; UDP-glucose diphosphorylase; UGPase 2 (Homo sapiens) (H.sapiens) AI170679 UDP-glucose pyrophosphorylase 2 Ugp2 289827 NM_001024743 0006011 // UDP-glucose metabolic process // inferred from direct assay /// 0006065 // UDP-glucuronate biosynthetic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0019255 // glucose 1-phosphate metabolic process // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay 0003983 // UTP:glucose-1-phosphate uridylyltransferase activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005536 // glucose binding // inferred from direct assay /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0032557 // pyrimidine ribonucleotide binding // inferred from direct assay 1388411_at BE111839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111839 /DB_XREF=gi:8503944 /DB_XREF=UI-R-BJ1-avz-d-02-0-UI.s1 /CLONE=UI-R-BJ1-avz-d-02-0-UI /FEA=EST /CNT=20 /TID=Rn.11507.1 /TIER=Stack /STK=19 /UG=Rn.11507 /UG_TITLE=ESTs BE111839 integrator complex subunit 3 Ints3 361988 XM_001075102 /// XM_342288 0006281 // DNA repair // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0010212 // response to ionizing radiation // not recorded /// 0016180 // snRNA processing // not recorded /// 0031576 // G2/M transition checkpoint // not recorded 0005634 // nucleus // not recorded /// 0032039 // integrator complex // not recorded /// 0070876 // SOSS complex // not recorded 0005515 // protein binding // not recorded 1388412_at BI284376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284376 /DB_XREF=gi:14936998 /DB_XREF=UI-R-CX0s-cco-d-09-0-UI.s1 /CLONE=UI-R-CX0s-cco-d-09-0-UI /FEA=EST /CNT=19 /TID=Rn.2250.1 /TIER=Stack /STK=19 /UG=Rn.2250 /UG_TITLE=ESTs BI284376 similar to RIKEN cDNA 2400003C14 RGD1307799 307833 NM_001017454 0007049 // cell cycle // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005793 // ER-Golgi intermediate compartment // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388413_at BI282760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282760 /DB_XREF=gi:14933848 /DB_XREF=UI-R-CW0s-cce-h-05-0-UI.s1 /CLONE=UI-R-CW0s-cce-h-05-0-UI /FEA=EST /CNT=23 /TID=Rn.14242.1 /TIER=Stack /STK=19 /UG=Rn.14242 /UG_TITLE=ESTs, Weakly similar to SRA4 RAT CTD-BINDING SR-LIKE PROTEIN RA4 (R.norvegicus) BI282760 ribosome binding protein 1 Rrbp1 311483 XM_001053669 /// XM_230637 0015031 // protein transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // not recorded /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation 1388414_at AI410498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410498 /DB_XREF=gi:4254002 /DB_XREF=EST238791 /CLONE=RHECX31 /FEA=EST /CNT=30 /TID=Rn.3392.1 /TIER=Stack /STK=18 /UG=Rn.3392 /UG_TITLE=ESTs, Moderately similar to NIPM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE 15 KD SUBUNIT (H.sapiens) AI410498 NADH dehydrogenase (ubiquinone) Fe-S protein 5 Ndufs5 362588 NM_001030052 0032981 // mitochondrial respiratory chain complex I assembly // not recorded 0005739 // mitochondrion // not recorded /// 0005747 // mitochondrial respiratory chain complex I // not recorded 1388415_at BE109560 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109560 /DB_XREF=gi:8501665 /DB_XREF=UI-R-BJ1-avp-e-11-0-UI.s1 /CLONE=UI-R-BJ1-avp-e-11-0-UI /FEA=EST /CNT=27 /TID=Rn.9435.1 /TIER=Stack /STK=18 /UG=Rn.9435 /UG_TITLE=ESTs BE109560 Catenin (cadherin associated protein), delta 1 Ctnnd1 311163 NM_001107740 0001738 // morphogenesis of a polarized epithelium // not recorded /// 0007155 // cell adhesion // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0007435 // salivary gland morphogenesis // not recorded /// 0016337 // cell-cell adhesion // not recorded /// 0030216 // keratinocyte differentiation // not recorded /// 0060690 // epithelial cell differentiation involved in salivary gland development // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005915 // zonula adherens // inferred from direct assay /// 0030027 // lamellipodium // inferred from direct assay /// 0030027 // lamellipodium // not recorded /// 0030426 // growth cone // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019903 // protein phosphatase binding // not recorded /// 0019904 // protein domain specific binding // not recorded /// 0042153 // RPTP-like protein binding // not recorded /// 0045296 // cadherin binding // not recorded /// 0050839 // cell adhesion molecule binding // inferred from physical interaction 1388416_at BI282758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282758 /DB_XREF=gi:14933844 /DB_XREF=UI-R-CW0s-cce-h-03-0-UI.s1 /CLONE=UI-R-CW0s-cce-h-03-0-UI /FEA=EST /CNT=25 /TID=Rn.22436.1 /TIER=Stack /STK=18 /UG=Rn.22436 /UG_TITLE=ESTs, Highly similar to S25111 alpha-2-macroglobulin receptor precursor - mouse (M.musculus) BI282758 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) Lrp1 299858 NM_001130490 /// XM_001056970 /// XM_243524 0006898 // receptor-mediated endocytosis // inferred from mutant phenotype /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007568 // aging // inferred from expression pattern /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0010951 // negative regulation of endopeptidase activity // inferred by curator /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0042157 // lipoprotein metabolic process // inferred from expression pattern /// 0043277 // apoptotic cell clearance // inferred from electronic annotation /// 0043277 // apoptotic cell clearance // not recorded /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005768 // endosome // inferred from direct assay /// 0030136 // clathrin-coated vesicle // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0002020 // protease binding // inferred from physical interaction /// 0005515 // protein binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from electronic annotation /// 0032403 // protein complex binding // not recorded /// 0034185 // apolipoprotein binding // inferred from electronic annotation /// 0034185 // apolipoprotein binding // not recorded 1388417_at BI281876 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281876 /DB_XREF=gi:14932064 /DB_XREF=UI-R-CU0s-cbt-f-04-0-UI.s1 /CLONE=UI-R-CU0s-cbt-f-04-0-UI /FEA=EST /CNT=25 /TID=Rn.2709.1 /TIER=Stack /STK=18 /UG=Rn.2709 /UG_TITLE=ESTs, Moderately similar to AF191339 1 anaphase-promoting complex subunit 5 (H.sapiens) BI281876 anaphase-promoting complex subunit 5 Anapc5 288671 NM_001080147 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070979 // protein K11-linked ubiquitination // not recorded /// 0070979 // protein K11-linked ubiquitination // inferred from sequence or structural similarity /// 0070979 // protein K11-linked ubiquitination // inferred from electronic annotation 0005654 // nucleoplasm // not recorded /// 0005680 // anaphase-promoting complex // not recorded /// 0005680 // anaphase-promoting complex // inferred from sequence or structural similarity /// 0005680 // anaphase-promoting complex // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005488 // binding // inferred from electronic annotation 1388418_at BG378875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378875 /DB_XREF=gi:13303347 /DB_XREF=UI-R-CV1-bvt-h-06-0-UI.s1 /CLONE=UI-R-CV1-bvt-h-06-0-UI /FEA=EST /CNT=24 /TID=Rn.264.1 /TIER=Stack /STK=18 /UG=Rn.264 /UG_TITLE=ESTs BG378875 B-cell CLL/lymphoma 9 Bcl9 310704 NM_001107703 1388419_at AW915005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915005 /DB_XREF=gi:8080689 /DB_XREF=EST346309 /CLONE=RGIBN39 /FEA=EST /CNT=23 /TID=Rn.13247.1 /TIER=Stack /STK=18 /UG=Rn.13247 /UG_TITLE=ESTs AW915005 CDK5 regulatory subunit associated protein 2 Cdk5rap2 286919 NM_173134 /// XM_001059116 /// XM_575844 0000226 // microtubule cytoskeleton organization // inferred from sequence or structural similarity /// 0001578 // microtubule bundle formation // inferred from sequence or structural similarity /// 0007059 // chromosome segregation // inferred from sequence or structural similarity /// 0007420 // brain development // traceable author statement /// 0045664 // regulation of neuron differentiation // traceable author statement /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0051297 // centrosome organization // inferred from sequence or structural similarity /// 0090231 // regulation of spindle checkpoint // inferred from sequence or structural similarity 0000242 // pericentriolar material // inferred from sequence or structural similarity /// 0000922 // spindle pole // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0008017 // microtubule binding // not recorded /// 0010843 // promoter binding // inferred from sequence or structural similarity /// 0032403 // protein complex binding // inferred from direct assay /// 0042808 // neuronal Cdc2-like kinase binding // inferred from physical interaction /// 0042808 // neuronal Cdc2-like kinase binding // not recorded /// 0042808 // neuronal Cdc2-like kinase binding // inferred from sequence or structural similarity 1388420_at BM389730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389730 /DB_XREF=gi:18189783 /DB_XREF=UI-R-CN1-cjp-i-16-0-UI.s1 /CLONE=UI-R-CN1-cjp-i-16-0-UI /FEA=EST /CNT=23 /TID=Rn.4114.1 /TIER=Stack /STK=18 /UG=Rn.4114 /UG_TITLE=ESTs, Moderately similar to TP2B MOUSE DNA TOPOISOMERASE II, BETA ISOZYME (M.musculus) BM389730 Retinoic acid receptor, beta Rarb 24706 XM_001059459 /// XM_001059523 /// XM_223843 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001657 // ureteric bud development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0021756 // striatum development // not recorded /// 0022008 // neurogenesis // not recorded /// 0032331 // negative regulation of chondrocyte differentiation // not recorded /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043068 // positive regulation of programmed cell death // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048048 // embryonic eye morphogenesis // not recorded /// 0055012 // ventricular cardiac muscle cell differentiation // not recorded /// 0061037 // negative regulation of cartilage development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0003708 // retinoic acid receptor activity // inferred from electronic annotation /// 0003708 // retinoic acid receptor activity // non-traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1388421_at BI295895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295895 /DB_XREF=gi:14959799 /DB_XREF=UI-R-DK0-cfc-a-05-0-UI.s1 /CLONE=UI-R-DK0-cfc-a-05-0-UI /FEA=EST /CNT=23 /TID=Rn.12035.1 /TIER=Stack /STK=18 /UG=Rn.12035 /UG_TITLE=ESTs, Moderately similar to Yeast LPG22P protein like (Caenorhabditis elegans) (C.elegans) BI295895 rCG52086-like LOC100362548 100362548 XM_002728290 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation 1388422_at BI275904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275904 /DB_XREF=gi:14920297 /DB_XREF=UI-R-CX0-bxh-h-06-0-UI.s1 /CLONE=UI-R-CX0-bxh-h-06-0-UI /FEA=EST /CNT=22 /TID=Rn.4251.1 /TIER=Stack /STK=18 /UG=Rn.4251 /UG_TITLE=ESTs, Weakly similar to SLI3 RAT SKELETAL MUSCLE LIM-PROTEIN 3 (R.norvegicus) BI275904 LIM and senescent cell antigen like domains 2 Lims2 361303 NM_001012163 0005829 // cytosol // not recorded /// 0005925 // focal adhesion // not recorded 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388423_at BM385163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385163 /DB_XREF=gi:18185216 /DB_XREF=UI-R-CN1-cjm-l-16-0-UI.s2 /CLONE=UI-R-CN1-cjm-l-16-0-UI /FEA=EST /CNT=22 /TID=Rn.4007.1 /TIER=Stack /STK=18 /UG=Rn.4007 /UG_TITLE=ESTs BM385163 hypothetical protein MGC:15854 RGD1302996 294231 NM_213610 0005739 // mitochondrion // not recorded 1388424_at AI407015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407015 /DB_XREF=gi:4250519 /DB_XREF=EST235303 /CLONE=ROVDV10 /FEA=EST /CNT=21 /TID=Rn.3262.1 /TIER=Stack /STK=18 /UG=Rn.3262 /UG_TITLE=ESTs AI407015 eukaryotic translation initiation factor 3, subunit J Eif3j 691947 NM_001077670 0006412 // translation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from sequence or structural similarity /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388425_at BG671569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671569 /DB_XREF=gi:13893668 /DB_XREF=DRNBUG04 /CLONE=DRNBUG04 /FEA=EST /CNT=22 /TID=Rn.1638.1 /TIER=Stack /STK=18 /UG=Rn.1638 /UG_TITLE=ESTs, Weakly similar to OAF_DROME OUT AT FIRST PROTEIN (CONTAINS: OUT AT FIRST SHORT PROTEIN) (D.melanogaster) BG671569 OAF homolog (Drosophila) Oaf 315594 NM_001014090 1388426_at BF398848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398848 /DB_XREF=gi:11383850 /DB_XREF=UI-R-CA1-biz-m-23-0-UI.s1 /CLONE=UI-R-CA1-biz-m-23-0-UI /FEA=EST /CNT=21 /TID=Rn.22074.1 /TIER=Stack /STK=18 /UG=Rn.22074 /UG_TITLE=ESTs, Highly similar to SRE1_RAT Sterol regulatory element binding protein-1 (SREBP-1) (Sterol regulatory element-binding transcription factor 1) (Adipocyte determination-and differentiation-dependent factor 1) (ADD1) (Fragment) (R.norvegicus) BF398848 sterol regulatory element binding transcription factor 1 Srebf1 78968 XM_001075680 /// XM_213329 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0003062 // regulation of heart rate by chemical signal // inferred from electronic annotation /// 0003062 // regulation of heart rate by chemical signal // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from mutant phenotype /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // not recorded /// 0008610 // lipid biosynthetic process // traceable author statement /// 0009267 // cellular response to starvation // inferred from direct assay /// 0009267 // cellular response to starvation // not recorded /// 0009267 // cellular response to starvation // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from electronic annotation /// 0009749 // response to glucose stimulus // not recorded /// 0010867 // positive regulation of triglyceride biosynthetic process // inferred from electronic annotation /// 0010867 // positive regulation of triglyceride biosynthetic process // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019217 // regulation of fatty acid metabolic process // inferred from electronic annotation /// 0019217 // regulation of fatty acid metabolic process // not recorded /// 0030324 // lung development // inferred from expression pattern /// 0031065 // positive regulation of histone deacetylation // inferred from electronic annotation /// 0031065 // positive regulation of histone deacetylation // not recorded /// 0032094 // response to food // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0032868 // response to insulin stimulus // traceable author statement /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0033762 // response to glucagon stimulus // inferred from expression pattern /// 0033993 // response to lipid // inferred from expression pattern /// 0035104 // positive regulation of transcription via sterol regulatory element binding // inferred from electronic annotation /// 0035104 // positive regulation of transcription via sterol regulatory element binding // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045542 // positive regulation of cholesterol biosynthetic process // inferred from electronic annotation /// 0045542 // positive regulation of cholesterol biosynthetic process // not recorded /// 0045941 // positive regulation of transcription // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046676 // negative regulation of insulin secretion // inferred from electronic annotation /// 0046676 // negative regulation of insulin secretion // not recorded /// 0050796 // regulation of insulin secretion // not recorded /// 0050796 // regulation of insulin secretion // inferred from electronic annotation /// 0051591 // response to cAMP // inferred from expression pattern /// 0070542 // response to fatty acid // inferred from expression pattern 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0012507 // ER to Golgi transport vesicle membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct assay /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003704 // specific RNA polymerase II transcription factor activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0032810 // sterol response element binding // not recorded /// 0032810 // sterol response element binding // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from direct assay 1388427_at AA946351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946351 /DB_XREF=gi:4132753 /DB_XREF=EST201850 /CLONE=RLUBH11 /FEA=EST /CNT=20 /TID=Rn.2457.1 /TIER=Stack /STK=18 /UG=Rn.2457 /UG_TITLE=ESTs AA946351 matrix-remodelling associated 8 Mxra8 313770 NM_001007002 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1388428_at BF283222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283222 /DB_XREF=gi:11214292 /DB_XREF=EST447813 /CLONE=RGIDZ05 /FEA=EST /CNT=20 /TID=Rn.23561.1 /TIER=Stack /STK=18 /UG=Rn.23561 /UG_TITLE=ESTs, Weakly similar to T24956 hypothetical protein T16G1.10 - Caenorhabditis elegans (C.elegans) BF283222 D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae) Dtd1 362227 NM_001108594 0019478 // D-amino acid catabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation 1388429_at BM384085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384085 /DB_XREF=gi:18184138 /DB_XREF=UI-R-DZ0-cks-o-10-0-UI.s1 /CLONE=UI-R-DZ0-cks-o-10-0-UI /FEA=EST /CNT=22 /TID=Rn.13265.1 /TIER=Stack /STK=18 /UG=Rn.13265 /UG_TITLE=ESTs BM384085 gem (nuclear organelle) associated protein 7 Gemin7 499391 NM_001109170 0000387 // spliceosomal snRNP assembly // not recorded 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0016604 // nuclear body // not recorded 0005515 // protein binding // not recorded 1388430_at BI280292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280292 /DB_XREF=gi:14928930 /DB_XREF=UI-R-DE0-cag-c-03-0-UI.s1 /CLONE=UI-R-DE0-cag-c-03-0-UI /FEA=EST /CNT=21 /TID=Rn.2864.1 /TIER=Stack /STK=18 /UG=Rn.2864 /UG_TITLE=ESTs BI280292 prostate tumor overexpressed 1 Ptov1 292888 NM_001008304 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 1388431_at AA851282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851282 /DB_XREF=gi:4131921 /DB_XREF=EST194050 /CLONE=RPLAE76 /FEA=EST /CNT=20 /TID=Rn.1014.1 /TIER=Stack /STK=18 /UG=Rn.1014 /UG_TITLE=ESTs AA851282 synovial sarcoma translocation, Chromosome 18 Ss18 361295 NM_001100900 0000226 // microtubule cytoskeleton organization // not recorded /// 0000902 // cell morphogenesis // not recorded /// 0007010 // cytoskeleton organization // not recorded /// 0007243 // intracellular protein kinase cascade // not recorded /// 0042493 // response to drug // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048013 // ephrin receptor signaling pathway // not recorded 0005881 // cytoplasmic microtubule // not recorded 0005515 // protein binding // not recorded /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded 1388432_at BI294994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294994 /DB_XREF=gi:14957985 /DB_XREF=UI-R-DK0-cee-e-03-0-UI.s1 /CLONE=UI-R-DK0-cee-e-03-0-UI /FEA=EST /CNT=19 /TID=Rn.22070.1 /TIER=Stack /STK=18 /UG=Rn.22070 /UG_TITLE=ESTs BI294994 optineurin Optn 246294 NM_145081 0000042 // protein targeting to Golgi // inferred from electronic annotation /// 0000042 // protein targeting to Golgi // not recorded /// 0007030 // Golgi organization // inferred from mutant phenotype /// 0007030 // Golgi organization // not recorded /// 0007030 // Golgi organization // inferred from electronic annotation /// 0034613 // cellular protein localization // inferred from electronic annotation /// 0034613 // cellular protein localization // not recorded /// 0043001 // Golgi to plasma membrane protein transport // inferred from electronic annotation /// 0043001 // Golgi to plasma membrane protein transport // not recorded /// 0090161 // Golgi ribbon formation // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from sequence or structural similarity /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded 1388433_at BI279605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279605 /DB_XREF=gi:14927581 /DB_XREF=UI-R-DE0-cae-e-07-0-UI.s1 /CLONE=UI-R-DE0-cae-e-07-0-UI /FEA=EST /CNT=19 /TID=Rn.9359.1 /TIER=Stack /STK=18 /UG=Rn.9359 /UG_TITLE=ESTs, Moderately similar to KERATIN, TYPE I CYTOSKELETAL 19 (R.norvegicus) BI279605 keratin 19 Krt19 360626 NM_199498 0043627 // response to estrogen stimulus // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // not recorded /// 0045214 // sarcomere organization // inferred from electronic annotation /// 0045214 // sarcomere organization // not recorded /// 0060706 // cell differentiation involved in embryonic placenta development // inferred from electronic annotation /// 0060706 // cell differentiation involved in embryonic placenta development // not recorded 0005882 // intermediate filament // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0030018 // Z disc // not recorded /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042383 // sarcolemma // not recorded /// 0043034 // costamere // inferred from electronic annotation /// 0043034 // costamere // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008307 // structural constituent of muscle // inferred from electronic annotation /// 0008307 // structural constituent of muscle // not recorded 1388434_at AA818018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818018 /DB_XREF=gi:4198541 /DB_XREF=UI-R-A0-ah-d-10-0-UI.s1 /CLONE=UI-R-A0-ah-d-10-0-UI /FEA=EST /CNT=19 /TID=Rn.1226.1 /TIER=Stack /STK=18 /UG=Rn.1226 /UG_TITLE=ESTs, Highly similar to expressed sequence AF252871; melanocyte proliferating gene 1 (Mus musculus) (M.musculus) AA818018 melanocyte proliferating gene 1 Myg1 300258 NM_001005545 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation 1388435_at BG373193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373193 /DB_XREF=gi:13269730 /DB_XREF=UI-R-CV0-brp-g-09-0-UI.s1 /CLONE=UI-R-CV0-brp-g-09-0-UI /FEA=EST /CNT=19 /TID=Rn.20392.1 /TIER=Stack /STK=18 /UG=Rn.20392 /UG_TITLE=ESTs, Weakly similar to GAMMA CRYSTALLIN B (R.norvegicus) BG373193 crystallin, gamma S Crygs 689897 NM_001109553 0002009 // morphogenesis of an epithelium // inferred from electronic annotation /// 0002009 // morphogenesis of an epithelium // not recorded /// 0002088 // lens development in camera-type eye // inferred from electronic annotation /// 0002088 // lens development in camera-type eye // not recorded 0005212 // structural constituent of eye lens // inferred from electronic annotation /// 0005212 // structural constituent of eye lens // not recorded 1388436_at AI230728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230728 /DB_XREF=gi:3814615 /DB_XREF=EST227423 /CLONE=REMDA51 /FEA=EST /CNT=19 /TID=Rn.9347.1 /TIER=Stack /STK=18 /UG=Rn.9347 /UG_TITLE=ESTs, Highly similar to S42114 small nuclear ribonucleoprotein U1A - mouse (M.musculus) AI230728 small nuclear ribonucleoprotein polypeptide A Snrpa 292729 NM_001008303 0008380 // RNA splicing // not recorded 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388437_at AI103153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103153 /DB_XREF=gi:3707727 /DB_XREF=EST212442 /CLONE=REMBX81 /FEA=EST /CNT=22 /TID=Rn.11888.1 /TIER=Stack /STK=18 /UG=Rn.11888 /UG_TITLE=ESTs AI103153 1388438_at AI230346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230346 /DB_XREF=gi:3814233 /DB_XREF=EST227041 /CLONE=REMCV39 /FEA=EST /CNT=19 /TID=Rn.3286.1 /TIER=Stack /STK=18 /UG=Rn.3286 /UG_TITLE=ESTs, Weakly similar to NPL1 MOUSE NUCLEOSOME ASSEMBLY PROTEIN 1-LIKE 1 (M.musculus) AI230346 nucleosome assembly protein 1-like 4 Nap1l4 361684 NM_001012170 0006334 // nucleosome assembly // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1388439_at BI282959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282959 /DB_XREF=gi:14934240 /DB_XREF=UI-R-CW0s-ccf-c-12-0-UI.s1 /CLONE=UI-R-CW0s-ccf-c-12-0-UI /FEA=EST /CNT=18 /TID=Rn.35712.1 /TIER=Stack /STK=18 /UG=Rn.35712 /UG_TITLE=ESTs, Highly similar to FKB6 MOUSE 65 KDA FK506-BINDING PROTEIN PRECURSOR (M.musculus) BI282959 FK506 binding protein 10 Fkbp10 360627 NM_001014120 0006457 // protein folding // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388440_at AI408482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408482 /DB_XREF=gi:4251986 /DB_XREF=EST236772 /CLONE=ROVEP01 /FEA=EST /CNT=18 /TID=Rn.6501.1 /TIER=Stack /STK=18 /UG=Rn.6501 /UG_TITLE=ESTs AI408482 anterior pharynx defective 1 homolog B (C. elegans) Aph1b 300802 NM_001047090 0006915 // apoptosis // not recorded /// 0008152 // metabolic process // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0016485 // protein processing // not recorded /// 0016485 // protein processing // inferred from electronic annotation /// 0031293 // membrane protein intracellular domain proteolysis // not recorded /// 0043085 // positive regulation of catalytic activity // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030133 // transport vesicle // not recorded 0004175 // endopeptidase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded 1388441_at BG379987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379987 /DB_XREF=gi:13304459 /DB_XREF=UI-R-CS0-bto-f-05-0-UI.s1 /CLONE=UI-R-CS0-bto-f-05-0-UI /FEA=EST /CNT=35 /TID=Rn.64564.1 /TIER=Stack /STK=17 /UG=Rn.64564 /UG_TITLE=ESTs BG379987 hypothetical protein LOC689574 LOC689574 689574 NM_001195503 /// NM_001195504 /// XM_001071240 /// XM_002726341 /// XM_002726342 /// XM_002729300 1388442_at AA848326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848326 /DB_XREF=gi:2935866 /DB_XREF=EST191086 /CLONE=RHEAL55 /FEA=EST /CNT=67 /TID=Rn.1762.1 /TIER=Stack /STK=17 /UG=Rn.1762 /UG_TITLE=ESTs, Moderately similar to CALNEXIN PRECURSOR (R.norvegicus) AA848326 calnexin Canx 29144 NM_172008 0006457 // protein folding // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005840 // ribosome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0030424 // axon // inferred from direct assay /// 0032839 // dendrite cytoplasm // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1388443_at AI177871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177871 /DB_XREF=gi:4135026 /DB_XREF=EST221520 /CLONE=RPLCH67 /FEA=EST /CNT=32 /TID=Rn.104.1 /TIER=Stack /STK=17 /UG=Rn.104 /UG_TITLE=ESTs, Highly similar to DOC1 MOUSE PUTATIVE ORAL CANCER SUPPRESSOR (M.musculus) AI177871 CDK2-associated protein 1 Cdk2ap1 360804 NM_001113751 0005515 // protein binding // not recorded 1388444_at BI291633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291633 /DB_XREF=gi:14951361 /DB_XREF=UI-R-DN0-ciu-j-11-0-UI.s1 /CLONE=UI-R-DN0-ciu-j-11-0-UI /FEA=EST /CNT=30 /TID=Rn.2022.1 /TIER=Stack /STK=17 /UG=Rn.2022 /UG_TITLE=ESTs, Highly similar to KIAA0242 protein (H.sapiens) BI291633 UBX domain protein 4 Ubxn4 304766 NM_001012025 0006986 // response to unfolded protein // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388445_at BF287964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287964 /DB_XREF=gi:11219034 /DB_XREF=EST452555 /CLONE=RGIGN05 /FEA=EST /CNT=26 /TID=Rn.8289.1 /TIER=Stack /STK=17 /UG=Rn.8289 /UG_TITLE=ESTs, Weakly similar to ZAP 36annexin IV (Rattus norvegicus) (R.norvegicus) BF287964 annexin A11 Anxa11 290527 NM_001011918 0006909 // phagocytosis // inferred from electronic annotation /// 0006909 // phagocytosis // not recorded /// 0007109 // cytokinesis, completion of separation // inferred from electronic annotation /// 0007109 // cytokinesis, completion of separation // not recorded /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded 0005635 // nuclear envelope // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005819 // spindle // inferred from electronic annotation /// 0005819 // spindle // not recorded /// 0030496 // midbody // inferred from electronic annotation /// 0030496 // midbody // not recorded /// 0042581 // specific granule // inferred from electronic annotation /// 0042581 // specific granule // not recorded /// 0042582 // azurophil granule // inferred from electronic annotation /// 0042582 // azurophil granule // not recorded /// 0045335 // phagocytic vesicle // inferred from electronic annotation /// 0045335 // phagocytic vesicle // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // not recorded /// 0008429 // phosphatidylethanolamine binding // not recorded /// 0048155 // S100 alpha binding // inferred from electronic annotation /// 0048155 // S100 alpha binding // not recorded /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded 1388446_at BF397834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397834 /DB_XREF=gi:11382818 /DB_XREF=UI-R-BS2-bec-b-11-0-UI.s1 /CLONE=UI-R-BS2-bec-b-11-0-UI /FEA=EST /CNT=24 /TID=Rn.2043.1 /TIER=Stack /STK=17 /UG=Rn.2043 /UG_TITLE=ESTs BF397834 similar to heterogeneous nuclear ribonucleoprotein A0 RGD1563684 498696 XM_002725228 1388447_at AA800701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800701 /DB_XREF=gi:4131531 /DB_XREF=EST190198 /CLONE=RLUAK44 /FEA=EST /CNT=27 /TID=Rn.37644.1 /TIER=Stack /STK=17 /UG=Rn.37644 /UG_TITLE=ESTs AA800701 similar to limb-bud and heart LOC683626 683626 NM_001129880 1388448_at AI235065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235065 /DB_XREF=gi:3828571 /DB_XREF=EST231627 /CLONE=ROVCM90 /FEA=EST /CNT=23 /TID=Rn.7470.1 /TIER=Stack /STK=17 /UG=Rn.7470 /UG_TITLE=ESTs AI235065 CDC42 small effector 2 Cdc42se2 691031 NM_001126089 0006909 // phagocytosis // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0009966 // regulation of signal transduction // not recorded /// 0009966 // regulation of signal transduction // inferred from sequence or structural similarity /// 0009966 // regulation of signal transduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005198 // structural molecule activity // not recorded /// 0005198 // structural molecule activity // inferred from sequence or structural similarity /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388449_at AI175551 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175551 /DB_XREF=gi:3726189 /DB_XREF=EST219106 /CLONE=RMUCO87 /FEA=EST /CNT=27 /TID=Rn.3910.1 /TIER=Stack /STK=17 /UG=Rn.3910 /UG_TITLE=ESTs, Highly similar to EF1B_MOUSE Elongation factor 1-beta (EF-1-beta) (M.musculus) AI175551 eukaryotic translation elongation factor 1 beta 2 Eef1b2 363241 NM_001108799 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0006414 // translational elongation // inferred from electronic annotation 0005829 // cytosol // not recorded /// 0005853 // eukaryotic translation elongation factor 1 complex // inferred from electronic annotation 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388450_at BI279570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279570 /DB_XREF=gi:14927512 /DB_XREF=UI-R-DE0-cae-b-02-0-UI.s1 /CLONE=UI-R-DE0-cae-b-02-0-UI /FEA=EST /CNT=22 /TID=Rn.17198.1 /TIER=Stack /STK=17 /UG=Rn.17198 /UG_TITLE=ESTs BI279570 1388451_at AA817802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817802 /DB_XREF=gi:4198328 /DB_XREF=UI-R-A0-ae-b-09-0-UI.s1 /CLONE=UI-R-A0-ae-b-09-0-UI /FEA=EST /CNT=23 /TID=Rn.1110.1 /TIER=Stack /STK=17 /UG=Rn.1110 /UG_TITLE=ESTs AA817802 1388452_at AI716904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716904 /DB_XREF=gi:5034160 /DB_XREF=UI-R-Y0-aci-e-11-0-UI.s1 /CLONE=UI-R-Y0-aci-e-11-0-UI /FEA=EST /CNT=22 /TID=Rn.15590.1 /TIER=Stack /STK=17 /UG=Rn.15590 /UG_TITLE=ESTs AI716904 sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2 Spock2 361840 NM_001108533 0005509 // calcium ion binding // inferred from electronic annotation 1388453_at BI296048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296048 /DB_XREF=gi:14960100 /DB_XREF=UI-R-DK0-cfd-g-04-0-UI.s1 /CLONE=UI-R-DK0-cfd-g-04-0-UI /FEA=EST /CNT=22 /TID=Rn.3035.1 /TIER=Stack /STK=17 /UG=Rn.3035 /UG_TITLE=ESTs, Weakly similar to A60543 protein kinase (R.norvegicus) BI296048 myeloid-associated differentiation marker Myadm 369016 NM_183332 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1388454_at AI230759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230759 /DB_XREF=gi:3814646 /DB_XREF=EST227454 /CLONE=REMDA88 /FEA=EST /CNT=21 /TID=Rn.2946.1 /TIER=Stack /STK=17 /UG=Rn.2946 /UG_TITLE=ESTs, Moderately similar to ornithine decarboxylase antizyme 2; ornithine decarboxylase antizyme; antizyme 2 (Mus musculus) (M.musculus) AI230759 ornithine decarboxylase antizyme 2 Oaz2 501454 NM_001109899 0008073 // ornithine decarboxylase inhibitor activity // inferred from electronic annotation 1388455_at AA799996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799996 /DB_XREF=gi:2862951 /DB_XREF=EST189493 /CLONE=RHEAI07 /FEA=EST /CNT=27 /TID=Rn.3319.1 /TIER=Stack /STK=17 /UG=Rn.3319 /UG_TITLE=ESTs, Weakly similar to GBG5_HUMAN GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)G(S)G(O) GAMMA-5 SUBUNIT (R.norvegicus) AA799996 guanine nucleotide binding protein (G protein), gamma 10 Gng10 114119 NM_053660 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded 0005834 // heterotrimeric G-protein complex // inferred from direct assay /// 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation 1388456_at AI228548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228548 /DB_XREF=gi:3812435 /DB_XREF=EST225243 /CLONE=RBRCW32 /FEA=EST /CNT=23 /TID=Rn.11091.1 /TIER=Stack /STK=17 /UG=Rn.11091 /UG_TITLE=ESTs, Highly similar to S10A RAT S-100 PROTEIN, ALPHA CHAIN (R.norvegicus) AI228548 S100 calcium binding protein A1 S100a1 295214 NM_001007636 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // not recorded 0005509 // calcium ion binding // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // non-traceable author statement /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048154 // S100 beta binding // inferred from electronic annotation /// 0048154 // S100 beta binding // not recorded /// 0048155 // S100 alpha binding // inferred from electronic annotation /// 0048155 // S100 alpha binding // not recorded /// 0051117 // ATPase binding // inferred from electronic annotation /// 0051117 // ATPase binding // not recorded 1388457_at AI176633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176633 /DB_XREF=gi:3727271 /DB_XREF=EST220224 /CLONE=ROVBU82 /FEA=EST /CNT=20 /TID=Rn.106.1 /TIER=Stack /STK=17 /UG=Rn.106 /UG_TITLE=ESTs AI176633 family with sequence similarity 125, member A Fam125a 290635 NM_199375 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0017124 // SH3 domain binding // inferred from electronic annotation 1388458_at BI291451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291451 /DB_XREF=gi:14950995 /DB_XREF=UI-R-CV2-cgq-d-07-0-UI.s1 /CLONE=UI-R-CV2-cgq-d-07-0-UI /FEA=EST /CNT=25 /TID=Rn.17046.1 /TIER=Stack /STK=17 /UG=Rn.17046 /UG_TITLE=ESTs, Highly similar to AC12_HUMAN ACTIVATOR 1 37 KD SUBUNIT (H.sapiens) BI291451 replication factor C (activator 1) 4 Rfc4 288003 NM_001105869 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded /// 0006297 // nucleotide-excision repair, DNA gap filling // not recorded 0005654 // nucleoplasm // not recorded /// 0005663 // DNA replication factor C complex // inferred from electronic annotation /// 0005663 // DNA replication factor C complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003689 // DNA clamp loader activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1388459_at AI101782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101782 /DB_XREF=gi:3706642 /DB_XREF=EST211071 /CLONE=RBRBV01 /FEA=EST /CNT=22 /TID=Rn.12030.1 /TIER=Stack /STK=17 /UG=Rn.12030 /UG_TITLE=ESTs AI101782 collagen, type XVIII, alpha 1 Col18a1 85251 NM_053489 /// XM_001079576 /// XM_241632 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001886 // endothelial cell morphogenesis // not recorded /// 0001886 // endothelial cell morphogenesis // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0051599 // response to hydrostatic pressure // inferred from expression pattern 0005604 // basement membrane // not recorded /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0030938 // collagen type XVIII // traceable author statement /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1388460_at BM384693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384693 /DB_XREF=gi:18184746 /DB_XREF=UI-R-DY0-ckl-p-17-0-UI.s1 /CLONE=UI-R-DY0-ckl-p-17-0-UI /FEA=EST /CNT=20 /TID=Rn.8945.1 /TIER=Stack /STK=17 /UG=Rn.8945 /UG_TITLE=ESTs, Highly similar to CAPG MOUSE MACROPHAGE CAPPING PROTEIN (M.musculus) BM384693 capping protein (actin filament), gelsolin-like Capg 297339 NM_001013086 0030031 // cell projection assembly // inferred from electronic annotation /// 0030031 // cell projection assembly // not recorded /// 0051693 // actin filament capping // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded /// 0042470 // melanosome // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation 1388461_at BG380732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380732 /DB_XREF=gi:13305204 /DB_XREF=UI-R-CT0-bua-g-08-0-UI.s1 /CLONE=UI-R-CT0-bua-g-08-0-UI /FEA=EST /CNT=19 /TID=Rn.11845.1 /TIER=Stack /STK=17 /UG=Rn.11845 /UG_TITLE=ESTs, Weakly similar to linker of T-cell receptor pathways (Rattus norvegicus) (R.norvegicus) BG380732 src homology 2 domain-containing transforming protein D Shd 316507 NM_001108223 0005515 // protein binding // inferred from electronic annotation 1388462_at AI407506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407506 /DB_XREF=gi:4251010 /DB_XREF=EST235795 /CLONE=ROVDZ46 /FEA=EST /CNT=19 /TID=Rn.35152.1 /TIER=Stack /STK=17 /UG=Rn.35152 /UG_TITLE=ESTs AI407506 SH3-binding domain kinase 1 Sbk1 113907 NM_147135 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0018107 // peptidyl-threonine phosphorylation // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1388463_at AW252660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252660 /DB_XREF=gi:6596251 /DB_XREF=UI-R-BJ0-aeb-b-04-0-UI.s1 /CLONE=UI-R-BJ0-aeb-b-04-0-UI /FEA=EST /CNT=19 /TID=Rn.13429.1 /TIER=Stack /STK=17 /UG=Rn.13429 /UG_TITLE=ESTs, Moderately similar to AF072733 1 putative secreted protein (H.sapiens) AW252660 testis expressed 264 Tex264 300988 NM_001007665 1388464_at AI598527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598527 /DB_XREF=gi:4607561 /DB_XREF=EST250216 /CLONE=REMDS12 /FEA=EST /CNT=19 /TID=Rn.27489.1 /TIER=Stack /STK=17 /UG=Rn.27489 /UG_TITLE=ESTs, Moderately similar to Y076_HUMAN HYPOTHETICAL PROTEIN KIAA0076 (H.sapiens) AI598527 similar to cullin 7 LOC680835 680835 XM_001056520 /// XM_002727163 0001570 // vasculogenesis // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0030071 // regulation of mitotic metaphase/anaphase transition // inferred from electronic annotation 0005680 // anaphase-promoting complex // inferred from electronic annotation /// 0031461 // cullin-RING ubiquitin ligase complex // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation 1388465_at AA891733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891733 /DB_XREF=gi:3018612 /DB_XREF=EST195536 /CLONE=RKIAG10 /FEA=EST /CNT=21 /TID=Rn.8288.1 /TIER=Stack /STK=17 /UG=Rn.8288 /UG_TITLE=ESTs AA891733 LEA_4 domain containing protein RGD1359600 RGD1359600 307343 NM_001007688 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1388466_at BI285842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285842 /DB_XREF=gi:14939897 /DB_XREF=UI-R-CX0s-ccv-e-04-0-UI.s1 /CLONE=UI-R-CX0s-ccv-e-04-0-UI /FEA=EST /CNT=20 /TID=Rn.11670.1 /TIER=Stack /STK=17 /UG=Rn.11670 /UG_TITLE=ESTs, Highly similar to PSD3 MOUSE 26S PROTEASOME REGULATORY SUBUNIT S3 (M.musculus) BI285842 proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 Psmd3 287670 NM_001008281 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0042176 // regulation of protein catabolic process // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030234 // enzyme regulator activity // inferred from electronic annotation 1388467_at BG378576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378576 /DB_XREF=gi:13303048 /DB_XREF=UI-R-CV1-bvr-b-03-0-UI.s1 /CLONE=UI-R-CV1-bvr-b-03-0-UI /FEA=EST /CNT=19 /TID=Rn.1741.1 /TIER=Stack /STK=17 /UG=Rn.1741 /UG_TITLE=ESTs BG378576 small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha Sgta 64667 NM_022703 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388468_at BI284508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284508 /DB_XREF=gi:14937260 /DB_XREF=UI-R-CX0s-ccr-h-06-0-UI.s1 /CLONE=UI-R-CX0s-ccr-h-06-0-UI /FEA=EST /CNT=18 /TID=Rn.1851.2 /TIER=Stack /STK=17 /UG=Rn.1851 /LL=64055 /UG_GENE=Guca2b /UG_TITLE=uroguanylin BI284508 CDC42 small effector 1 Cdc42se1 499672 NM_001039044 0006909 // phagocytosis // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1388469_at AA945615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945615 /DB_XREF=gi:3105531 /DB_XREF=EST201114 /CLONE=RLIAP82 /FEA=EST /CNT=18 /TID=Rn.4303.1 /TIER=Stack /STK=17 /UG=Rn.4303 /UG_TITLE=ESTs AA945615 1388470_at AA892772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892772 /DB_XREF=gi:4132205 /DB_XREF=EST196575 /CLONE=RKIAX15 /FEA=EST /CNT=18 /TID=Rn.3335.1 /TIER=Stack /STK=17 /UG=Rn.3335 /UG_TITLE=ESTs, Highly similar to T46366 hypothetical protein DKFZp434C0118.1 (H.sapiens) AA892772 f-box protein 9 Fbxo9 300849 NM_001011998 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388471_at AA800197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800197 /DB_XREF=gi:2863152 /DB_XREF=EST189694 /CLONE=RHEAM34 /FEA=EST /CNT=18 /TID=Rn.3866.1 /TIER=Stack /STK=17 /UG=Rn.3866 /UG_TITLE=ESTs AA800197 t-complex 11 (mouse) like 2 Tcp11l2 314683 NM_001017458 1388472_at AI177860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177860 /DB_XREF=gi:3728498 /DB_XREF=EST221509 /CLONE=RPLCH53 /FEA=EST /CNT=18 /TID=Rn.17291.1 /TIER=Stack /STK=17 /UG=Rn.17291 /UG_TITLE=ESTs AI177860 1388473_at BF418041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418041 /DB_XREF=gi:11405995 /DB_XREF=UI-R-CA1-blv-c-12-0-UI.s1 /CLONE=UI-R-CA1-blv-c-12-0-UI /FEA=EST /CNT=20 /TID=Rn.22634.1 /TIER=Stack /STK=17 /UG=Rn.22634 /UG_TITLE=ESTs BF418041 1388474_at AI104523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104523 /DB_XREF=gi:3708865 /DB_XREF=EST213812 /CLONE=RHECE62 /FEA=EST /CNT=17 /TID=Rn.3776.1 /TIER=Stack /STK=17 /UG=Rn.3776 /UG_TITLE=ESTs AI104523 Ubiquitin-conjugating enzyme E2I Ube2i 25573 NM_013050 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0010469 // regulation of receptor activity // inferred from direct assay /// 0016925 // protein sumoylation // inferred from direct assay /// 0033145 // positive regulation of steroid hormone receptor signaling pathway // inferred from direct assay /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0051091 // positive regulation of transcription factor activity // inferred from direct assay /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0001650 // fibrillar center // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016604 // nuclear body // inferred from direct assay /// 0016605 // PML body // not recorded /// 0030425 // dendrite // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation /// 0019789 // SUMO ligase activity // inferred from direct assay /// 0019899 // enzyme binding // not recorded /// 0043398 // HLH domain binding // inferred from electronic annotation /// 0043398 // HLH domain binding // not recorded /// 0043425 // bHLH transcription factor binding // inferred from physical interaction 1388475_at AA899150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899150 /DB_XREF=gi:4231649 /DB_XREF=UI-R-E0-cx-d-10-0-UI.s1 /CLONE=UI-R-E0-cx-d-10-0-UI /FEA=EST /CNT=17 /TID=Rn.3222.1 /TIER=Stack /STK=17 /UG=Rn.3222 /UG_TITLE=ESTs AA899150 Exoribonuclease 3 Eri3 313535 XM_001071982 /// XM_233435 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388476_at AI101391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101391 /DB_XREF=gi:3706298 /DB_XREF=EST210680 /CLONE=RBRBN75 /FEA=EST /CNT=17 /TID=Rn.14989.1 /TIER=Stack /STK=17 /UG=Rn.14989 /UG_TITLE=ESTs, Highly similar to TIAR MOUSE NUCLEOLYSIN TIAR (M.musculus) AI101391 Tia1 cytotoxic granule-associated RNA binding protein-like 1 Tial1 361655 NM_001013193 0007281 // germ cell development // inferred from electronic annotation /// 0007281 // germ cell development // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0017145 // stem cell division // inferred from electronic annotation /// 0017145 // stem cell division // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0017091 // AU-rich element binding // inferred from electronic annotation /// 0017091 // AU-rich element binding // not recorded 1388477_at AI598440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598440 /DB_XREF=gi:4607488 /DB_XREF=EST250143 /CLONE=REMDP60 /FEA=EST /CNT=17 /TID=Rn.8157.1 /TIER=Stack /STK=17 /UG=Rn.8157 /UG_TITLE=ESTs, Highly similar to T08778 hypothetical protein DKFZp586I1520.1 (H.sapiens) AI598440 RAN binding protein 3 Ranbp3 501281 XM_001056647 /// XM_576696 0046907 // intracellular transport // inferred from electronic annotation 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1388478_at BE108225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108225 /DB_XREF=gi:8500330 /DB_XREF=UI-R-BS1-ayw-h-02-0-UI.s1 /CLONE=UI-R-BS1-ayw-h-02-0-UI /FEA=EST /CNT=17 /TID=Rn.34428.1 /TIER=Stack /STK=17 /UG=Rn.34428 /UG_TITLE=ESTs BE108225 transducin (beta)-like 1 X-linked Tbl1x 302711 NM_001106964 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043627 // response to estrogen stimulus // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // not recorded /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045444 // fat cell differentiation // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048545 // response to steroid hormone stimulus // not recorded /// 0048545 // response to steroid hormone stimulus // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005876 // spindle microtubule // not recorded /// 0017053 // transcriptional repressor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008013 // beta-catenin binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0019904 // protein domain specific binding // not recorded /// 0042393 // histone binding // not recorded 1388479_at BI294841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294841 /DB_XREF=gi:14957688 /DB_XREF=UI-R-DK0-cec-g-08-0-UI.s1 /CLONE=UI-R-DK0-cec-g-08-0-UI /FEA=EST /CNT=33 /TID=Rn.3476.2 /TIER=Stack /STK=16 /UG=Rn.3476 /UG_TITLE=ESTs, Highly similar to S30034 translocating chain-associating membrane protein (H.sapiens) BI294841 1388480_at AI412863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412863 /DB_XREF=gi:4256367 /DB_XREF=EST241163 /CLONE=RBRED62 /FEA=EST /CNT=27 /TID=Rn.4111.1 /TIER=Stack /STK=16 /UG=Rn.4111 /UG_TITLE=ESTs, Weakly similar to F49D11.9.p (Caenorhabditis elegans) (C.elegans) AI412863 glycolipid transfer protein Gltp 288707 NM_001134413 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0046836 // glycolipid transport // not recorded /// 0046836 // glycolipid transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0008289 // lipid binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0017089 // glycolipid transporter activity // inferred from electronic annotation /// 0017089 // glycolipid transporter activity // not recorded /// 0051861 // glycolipid binding // inferred from electronic annotation /// 0051861 // glycolipid binding // not recorded 1388481_at AI407731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407731 /DB_XREF=gi:4251235 /DB_XREF=EST236021 /CLONE=ROVDS46 /FEA=EST /CNT=24 /TID=Rn.6005.1 /TIER=Stack /STK=16 /UG=Rn.6005 /UG_TITLE=ESTs, Highly similar to 40S RIBOSOMAL PROTEIN S28 (R.norvegicus) AI407731 ribosomal protein S28 Rps28 691531 NM_001105730 0006412 // translation // inferred from electronic annotation /// 0006412 // translation // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // traceable author statement /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // traceable author statement 1388482_at BM384306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384306 /DB_XREF=gi:18184359 /DB_XREF=UI-R-DY0-ckr-f-16-0-UI.s1 /CLONE=UI-R-DY0-ckr-f-16-0-UI /FEA=EST /CNT=24 /TID=Rn.4205.1 /TIER=Stack /STK=16 /UG=Rn.4205 /UG_TITLE=ESTs, Moderately similar to T46394 hypothetical protein DKFZp434H0820.1 (H.sapiens) BM384306 family with sequence similarity 129, member B Fam129b 362115 NM_001109885 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1388483_at BI296011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296011 /DB_XREF=gi:14960028 /DB_XREF=UI-R-DK0-cfd-d-02-0-UI.s1 /CLONE=UI-R-DK0-cfd-d-02-0-UI /FEA=EST /CNT=27 /TID=Rn.1857.1 /TIER=Stack /STK=16 /UG=Rn.1857 /UG_TITLE=ESTs, Moderately similar to COF1 RAT COFILIN, NON-MUSCLE ISOFORM (R.norvegicus) BI296011 cofilin 2, muscle Cfl2 366624 NM_001108982 0005515 // protein binding // not recorded 1388484_at BI296084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296084 /DB_XREF=gi:14960172 /DB_XREF=UI-R-DK0-cew-b-08-0-UI.s1 /CLONE=UI-R-DK0-cew-b-08-0-UI /FEA=EST /CNT=22 /TID=Rn.3102.1 /TIER=Stack /STK=16 /UG=Rn.3102 /UG_TITLE=ESTs, Weakly similar to ubiquitin conjugating enzyme (Rattus norvegicus) (R.norvegicus) BI296084 ubiquitin-conjugating enzyme E2C Ube2c 296368 NM_001106542 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0008054 // cyclin catabolic process // not recorded /// 0010458 // exit from mitosis // not recorded /// 0010994 // free ubiquitin chain polymerization // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0031536 // positive regulation of exit from mitosis // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0070979 // protein K11-linked ubiquitination // not recorded 0005654 // nucleoplasm // not recorded /// 0005680 // anaphase-promoting complex // not recorded /// 0005829 // cytosol // not recorded 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1388485_at BG380414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380414 /DB_XREF=gi:13304886 /DB_XREF=UI-R-CT0-btx-a-02-0-UI.s1 /CLONE=UI-R-CT0-btx-a-02-0-UI /FEA=EST /CNT=23 /TID=Rn.3130.1 /TIER=Stack /STK=16 /UG=Rn.3130 /UG_TITLE=ESTs, Moderately similar to 0806162L protein URF5 (M.musculus) BG380414 chemokine (C-X-C motif) ligand 14 Cxcl14 306748 NM_001013137 0006955 // immune response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annotation 1388486_at BG671315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671315 /DB_XREF=gi:13893414 /DB_XREF=DRNBOG04 /CLONE=DRNBOG04 /FEA=EST /CNT=22 /TID=Rn.12305.1 /TIER=Stack /STK=16 /UG=Rn.12305 /UG_TITLE=ESTs BG671315 dipeptidylpeptidase 8 Dpp8 315758 NM_001108159 0006508 // proteolysis // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0016020 // membrane // inferred from electronic annotation 0008236 // serine-type peptidase activity // inferred from electronic annotation 1388487_at AI600061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600061 /DB_XREF=gi:4609109 /DB_XREF=EST251764 /CLONE=REMDQ56 /FEA=EST /CNT=21 /TID=Rn.34234.1 /TIER=Stack /STK=16 /UG=Rn.34234 /UG_TITLE=ESTs, Highly similar to S54147 alpha adducin - rat (R.norvegicus) AI600061 adducin 1 (alpha) Add1 24170 NM_016990 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006811 // ion transport // non-traceable author statement /// 0006884 // cell volume homeostasis // inferred from electronic annotation /// 0006884 // cell volume homeostasis // not recorded /// 0007010 // cytoskeleton organization // traceable author statement /// 0020027 // hemoglobin metabolic process // inferred from electronic annotation /// 0020027 // hemoglobin metabolic process // not recorded /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // not recorded /// 0032092 // positive regulation of protein binding // not recorded /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // not recorded /// 0051016 // barbed-end actin filament capping // not recorded /// 0051017 // actin filament bundle assembly // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005856 // cytoskeleton // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008290 // F-actin capping protein complex // not recorded /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005198 // structural molecule activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0030507 // spectrin binding // not recorded /// 0042608 // T cell receptor binding // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0051015 // actin filament binding // not recorded 1388488_at AA943742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943742 /DB_XREF=gi:3103658 /DB_XREF=EST199241 /CLONE=RBRAP11 /FEA=EST /CNT=22 /TID=Rn.4333.1 /TIER=Stack /STK=16 /UG=Rn.4333 /UG_TITLE=ESTs, Highly similar to RIKEN cDNA 1010001J12 (Mus musculus) (M.musculus) AA943742 LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) Lsm3 297455 NM_001106611 0005515 // protein binding // not recorded 1388489_at AA875107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875107 /DB_XREF=gi:4230988 /DB_XREF=UI-R-E0-cf-h-08-0-UI.s1 /CLONE=UI-R-E0-cf-h-08-0-UI /FEA=EST /CNT=21 /TID=Rn.3263.1 /TIER=Stack /STK=16 /UG=Rn.3263 /UG_TITLE=ESTs, Moderately similar to JE0379 NADH dehydrogenase (H.sapiens) AA875107 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3 Ndufa3 691001 XM_001076462 /// XM_002725503 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0005747 // mitochondrial respiratory chain complex I // not recorded 1388490_at AI104451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104451 /DB_XREF=gi:3708805 /DB_XREF=EST213740 /CLONE=RHECD59 /FEA=EST /CNT=20 /TID=Rn.3382.1 /TIER=Stack /STK=16 /UG=Rn.3382 /UG_TITLE=ESTs AI104451 BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) Bap1 306257 NM_001107292 0001558 // regulation of cell growth // not recorded /// 0001558 // regulation of cell growth // inferred from sequence or structural similarity /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016579 // protein deubiquitination // not recorded /// 0016579 // protein deubiquitination // inferred from sequence or structural similarity /// 0035522 // monoubiquitinated histone H2A deubiquitination // not recorded /// 0035522 // monoubiquitinated histone H2A deubiquitination // inferred from sequence or structural similarity /// 0051726 // regulation of cell cycle // not recorded /// 0051726 // regulation of cell cycle // inferred from sequence or structural similarity /// 0071108 // protein K48-linked deubiquitination // not recorded /// 0071108 // protein K48-linked deubiquitination // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0035517 // PR-DUB complex // not recorded /// 0035517 // PR-DUB complex // inferred from sequence or structural similarity 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0004221 // ubiquitin thiolesterase activity // inferred from sequence or structural similarity /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0004843 // ubiquitin-specific protease activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1388491_at AI234849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234849 /DB_XREF=gi:3828355 /DB_XREF=EST231411 /CLONE=ROVCI60 /FEA=EST /CNT=23 /TID=Rn.7396.1 /TIER=Stack /STK=16 /UG=Rn.7396 /UG_TITLE=ESTs, Highly similar to CLD4 MOUSE CLAUDIN-4 (M.musculus) AI234849 1388492_at AW919111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919111 /DB_XREF=gi:8084901 /DB_XREF=EST350415 /CLONE=RGIFC91 /FEA=EST /CNT=20 /TID=Rn.13300.1 /TIER=Stack /STK=16 /UG=Rn.13300 /UG_TITLE=ESTs AW919111 TNFAIP3 interacting protein 1 Tnip1 363599 NM_001108826 0009101 // glycoprotein biosynthetic process // not recorded 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded 1388493_at AI600030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600030 /DB_XREF=gi:4609078 /DB_XREF=EST251733 /CLONE=REMDO42 /FEA=EST /CNT=20 /TID=Rn.8389.1 /TIER=Stack /STK=16 /UG=Rn.8389 /UG_TITLE=ESTs AI600030 EGFR-coamplified and overexpressed protein Ecop 362374 NM_001108630 0005768 // endosome // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation 1388494_at BI281705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281705 /DB_XREF=gi:14931716 /DB_XREF=UI-R-CT0s-cav-e-04-0-UI.s1 /CLONE=UI-R-CT0s-cav-e-04-0-UI /FEA=EST /CNT=19 /TID=Rn.2237.1 /TIER=Stack /STK=16 /UG=Rn.2237 /UG_TITLE=ESTs BI281705 collagen, type IV, alpha 2 Col4a2 306628 XM_001076134 /// XM_225043 0016525 // negative regulation of angiogenesis // not recorded 0005581 // collagen // inferred from electronic annotation /// 0005587 // collagen type IV // not recorded /// 0005604 // basement membrane // not recorded /// 0031012 // extracellular matrix // not recorded 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388495_at BI303583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303583 /DB_XREF=gi:14979863 /DB_XREF=UI-R-DQ0-cja-p-07-0-UI.s1 /CLONE=UI-R-DQ0-cja-p-07-0-UI /FEA=EST /CNT=19 /TID=Rn.12118.1 /TIER=Stack /STK=16 /UG=Rn.12118 /UG_TITLE=ESTs BI303583 1388496_at AI103600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103600 /DB_XREF=gi:3708129 /DB_XREF=EST212889 /CLONE=REMCE01 /FEA=EST /CNT=19 /TID=Rn.22352.1 /TIER=Stack /STK=16 /UG=Rn.22352 /UG_TITLE=ESTs, Weakly similar to A37098 gelation factor ABP-280, long form (H.sapiens) AI103600 filamin C, gamma Flnc 362332 NM_001191862 /// XM_001061717 /// XM_001061768 /// XM_001061822 /// XM_002729295 /// XM_002729296 /// XM_342653 0048747 // muscle fiber development // not recorded 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388497_at AI411426 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411426 /DB_XREF=gi:4254930 /DB_XREF=EST239720 /CLONE=RKIES47 /FEA=EST /CNT=21 /TID=Rn.1730.1 /TIER=Stack /STK=16 /UG=Rn.1730 /UG_TITLE=ESTs, Weakly similar to S44652 f42h10.6 protein - Caenorhabditis elegans (C.elegans) AI411426 acyl-CoA thioesterase 13 Acot13 291135 NM_001106111 0051289 // protein homotetramerization // not recorded 0005739 // mitochondrion // not recorded 0016291 // acyl-CoA thioesterase activity // not recorded 1388498_at BF284014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284014 /DB_XREF=gi:11215084 /DB_XREF=EST448605 /CLONE=RGIEJ93 /FEA=EST /CNT=20 /TID=Rn.23.1 /TIER=Stack /STK=16 /UG=Rn.23 /UG_TITLE=ESTs BF284014 cyclin K Ccnk 500715 NM_001109672 0005515 // protein binding // not recorded 1388499_at AW531384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531384 /DB_XREF=gi:7173798 /DB_XREF=UI-R-BS0-amm-c-08-0-UI.s1 /CLONE=UI-R-BS0-amm-c-08-0-UI /FEA=EST /CNT=19 /TID=Rn.7420.1 /TIER=Stack /STK=16 /UG=Rn.7420 /UG_TITLE=ESTs AW531384 similar to hypothetical protein MGC7537 RGD1359380 303922 NM_001007676 0015031 // protein transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008565 // protein transporter activity // inferred from electronic annotation 1388500_at AI180252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180252 /DB_XREF=gi:3730890 /DB_XREF=EST223995 /CLONE=RSPCS47 /FEA=EST /CNT=18 /TID=Rn.15902.1 /TIER=Stack /STK=16 /UG=Rn.15902 /UG_TITLE=ESTs AI180252 1388501_at AW916335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916335 /DB_XREF=gi:8082045 /DB_XREF=EST347626 /CLONE=RGIDN39 /FEA=EST /CNT=18 /TID=Rn.24346.1 /TIER=Stack /STK=16 /UG=Rn.24346 /UG_TITLE=ESTs, Weakly similar to C32D5.6.p (Caenorhabditis elegans) (C.elegans) AW916335 hypothetical protein LOC686179 MGC125239 686179 NM_001077231 0005488 // binding // inferred from electronic annotation 1388502_at AI412624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412624 /DB_XREF=gi:4256128 /DB_XREF=EST240923 /CLONE=RBRDL06 /FEA=EST /CNT=18 /TID=Rn.2252.1 /TIER=Stack /STK=16 /UG=Rn.2252 /UG_TITLE=ESTs AI412624 inositol polyphosphate-5-phosphatase B Inpp5b 362590 NM_001100755 /// XM_001056372 /// XM_342909 0007165 // signal transduction // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0030317 // sperm motility // not recorded /// 0070613 // regulation of protein processing // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016021 // integral to membrane // not recorded 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation 1388503_at BE107430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107430 /DB_XREF=gi:8499535 /DB_XREF=UI-R-BS1-ayt-f-03-0-UI.s1 /CLONE=UI-R-BS1-ayt-f-03-0-UI /FEA=EST /CNT=36 /TID=Rn.22737.1 /TIER=Stack /STK=16 /UG=Rn.22737 /UG_TITLE=ESTs BE107430 EP300 interacting inhibitor of differentiation 1 Eid1 499882 NM_001109205 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030154 // cell differentiation // not recorded 0005634 // nucleus // not recorded 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0035034 // histone acetyltransferase regulator activity // not recorded /// 0035035 // histone acetyltransferase binding // not recorded 1388504_at AI231313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231313 /DB_XREF=gi:3815193 /DB_XREF=EST228001 /CLONE=REMDI48 /FEA=EST /CNT=23 /TID=Rn.3991.1 /TIER=Stack /STK=16 /UG=Rn.3991 /UG_TITLE=ESTs AI231313 RAD21 homolog (S. pombe) Rad21 314949 NM_001025701 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // not recorded 0000228 // nuclear chromosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388505_at BE109642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109642 /DB_XREF=gi:8501747 /DB_XREF=UI-R-BJ1-avq-e-04-0-UI.s1 /CLONE=UI-R-BJ1-avq-e-04-0-UI /FEA=EST /CNT=20 /TID=Rn.2378.1 /TIER=Stack /STK=16 /UG=Rn.2378 /UG_TITLE=ESTs BE109642 1388506_at AW144509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144509 /DB_XREF=gi:6164408 /DB_XREF=EST294886 /CLONE=RGIAO30 /FEA=EST /CNT=18 /TID=Rn.7293.1 /TIER=Stack /STK=16 /UG=Rn.7293 /UG_TITLE=ESTs, Weakly similar to plectin (Rattus norvegicus) (R.norvegicus) AW144509 desmoplakin Dsp 306871 XM_001058477 /// XM_225259 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0018149 // peptide cross-linking // inferred from electronic annotation /// 0018149 // peptide cross-linking // not recorded /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // not recorded /// 0034332 // adherens junction organization // inferred from electronic annotation /// 0034332 // adherens junction organization // not recorded /// 0042060 // wound healing // inferred from expression pattern /// 0043588 // skin development // inferred from electronic annotation /// 0043588 // skin development // not recorded 0001533 // cornified envelope // inferred from electronic annotation /// 0001533 // cornified envelope // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005912 // adherens junction // inferred from direct assay /// 0005916 // fascia adherens // inferred from direct assay /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0030057 // desmosome // inferred from direct assay /// 0030057 // desmosome // not recorded /// 0030057 // desmosome // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005198 // structural molecule activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030674 // protein binding, bridging // inferred from electronic annotation /// 0030674 // protein binding, bridging // not recorded 1388507_at AI104279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104279 /DB_XREF=gi:3704952 /DB_XREF=EST213568 /CLONE=RHEBZ71 /FEA=EST /CNT=18 /TID=Rn.7553.1 /TIER=Stack /STK=16 /UG=Rn.7553 /UG_TITLE=ESTs, Highly similar to IF6 MOUSE EUKARYOTIC TRANSLATION INITIATION FACTOR 6 (M.musculus) AI104279 eukaryotic translation initiation factor 6 Eif6 305506 NM_001037352 0042256 // mature ribosome assembly // inferred from electronic annotation 0005638 // lamin filament // not recorded /// 0005882 // intermediate filament // not recorded 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043022 // ribosome binding // inferred from electronic annotation 1388508_at BM384233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384233 /DB_XREF=gi:18184286 /DB_XREF=UI-R-DZ0-cks-c-15-0-UI.s1 /CLONE=UI-R-DZ0-cks-c-15-0-UI /FEA=EST /CNT=17 /TID=Rn.7484.1 /TIER=Stack /STK=16 /UG=Rn.7484 /UG_TITLE=ESTs BM384233 family with sequence similarity 32, member A Fam32a 498600 NM_001128078 0005730 // nucleolus // not recorded 1388509_at BI274303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274303 /DB_XREF=gi:14885104 /DB_XREF=UI-R-CW0-bwh-c-12-0-UI.s1 /CLONE=UI-R-CW0-bwh-c-12-0-UI /FEA=EST /CNT=17 /TID=Rn.17680.1 /TIER=Stack /STK=16 /UG=Rn.17680 /UG_TITLE=ESTs BI274303 1388510_at BI289511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289511 /DB_XREF=gi:14947159 /DB_XREF=UI-R-DK0-cfh-h-10-0-UI.s1 /CLONE=UI-R-DK0-cfh-h-10-0-UI /FEA=EST /CNT=17 /TID=Rn.7707.1 /TIER=Stack /STK=16 /UG=Rn.7707 /UG_TITLE=ESTs BI289511 chromatin modifying protein 6 Chmp6 287873 NM_001105856 0015031 // protein transport // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0047485 // protein N-terminus binding // not recorded 1388511_at AI412079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412079 /DB_XREF=gi:4255583 /DB_XREF=EST240373 /CLONE=RKIEH43 /FEA=EST /CNT=17 /TID=Rn.41376.1 /TIER=Stack /STK=16 /UG=Rn.41376 /UG_TITLE=ESTs, Weakly similar to T00342 hypothetical protein KIAA0580 (H.sapiens) AI412079 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 Arap1 361617 XM_001066901 /// XM_341895 0007165 // signal transduction // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation /// 0043089 // positive regulation of Cdc42 GTPase activity // not recorded /// 0051270 // regulation of cellular component movement // not recorded /// 0051491 // positive regulation of filopodium assembly // not recorded /// 0051497 // negative regulation of stress fiber assembly // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from direct assay 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005100 // Rho GTPase activator activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // not recorded /// 0008060 // ARF GTPase activator activity // not recorded /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1388512_at BM391512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391512 /DB_XREF=gi:18191565 /DB_XREF=UI-R-DY0-ckr-g-08-0-UI.s1 /CLONE=UI-R-DY0-ckr-g-08-0-UI /FEA=EST /CNT=18 /TID=Rn.44816.1 /TIER=Stack /STK=16 /UG=Rn.44816 /UG_TITLE=ESTs, Highly similar to CNRD MOUSE RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3,5-CYCLIC PHOSPHODIESTERASE DELTA-SUBUNIT (M.musculus) BM391512 phosphodiesterase 6D, cGMP-specific, rod, delta Pde6d 363272 NM_001108806 0007601 // visual perception // inferred from electronic annotation 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388513_at BI281612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281612 /DB_XREF=gi:14931517 /DB_XREF=UI-R-CT0s-cau-d-08-0-UI.s1 /CLONE=UI-R-CT0s-cau-d-08-0-UI /FEA=EST /CNT=19 /TID=Rn.8512.1 /TIER=Stack /STK=15 /UG=Rn.8512 /UG_TITLE=ESTs BI281612 1388514_at BI285247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285247 /DB_XREF=gi:14938691 /DB_XREF=UI-R-DB0-byx-h-03-0-UI.s1 /CLONE=UI-R-DB0-byx-h-03-0-UI /FEA=EST /CNT=18 /TID=Rn.16969.1 /TIER=Stack /STK=15 /UG=Rn.16969 /UG_TITLE=ESTs, Highly similar to P2CG MOUSE PROTEIN PHOSPHATASE 2C GAMMA ISOFORM (M.musculus) BI285247 protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform Ppm1g 259229 NM_147209 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // not recorded /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388515_at BE112952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112952 /DB_XREF=gi:8505057 /DB_XREF=UI-R-BJ1-awa-g-03-0-UI.s1 /CLONE=UI-R-BJ1-awa-g-03-0-UI /FEA=EST /CNT=18 /TID=Rn.6571.1 /TIER=Stack /STK=15 /UG=Rn.6571 /UG_TITLE=ESTs BE112952 1388516_at AI104258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104258 /DB_XREF=gi:3708644 /DB_XREF=EST213547 /CLONE=RHEBZ43 /FEA=EST /CNT=18 /TID=Rn.8104.1 /TIER=Stack /STK=15 /UG=Rn.8104 /UG_TITLE=ESTs AI104258 1388517_at AI599474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599474 /DB_XREF=gi:4608522 /DB_XREF=EST251177 /CLONE=REMDX54 /FEA=EST /CNT=18 /TID=Rn.3831.1 /TIER=Stack /STK=15 /UG=Rn.3831 /UG_TITLE=ESTs, Moderately similar to S78412 ribosomal protein L22, mitochondrial - rat (R.norvegicus) AI599474 mitochondrial ribosomal protein L40 Mrpl40 287962 NM_001024865 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005761 // mitochondrial ribosome // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 1388518_at AA799654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799654 /DB_XREF=gi:2862609 /DB_XREF=EST189151 /CLONE=RHEAD63 /FEA=EST /CNT=18 /TID=Rn.8165.1 /TIER=Stack /STK=15 /UG=Rn.8165 /UG_TITLE=ESTs AA799654 F-box and WD repeat domain containing 5 Fbxw5 362081 NM_001025730 0005515 // protein binding // not recorded 1388519_at BI281906 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281906 /DB_XREF=gi:14932123 /DB_XREF=UI-R-CU0s-cbu-a-04-0-UI.s1 /CLONE=UI-R-CU0s-cbu-a-04-0-UI /FEA=EST /CNT=18 /TID=Rn.3199.1 /TIER=Stack /STK=15 /UG=Rn.3199 /UG_TITLE=ESTs, Highly similar to protein translocation complex beta; protein transport protein SEC61 beta subunit (Homo sapiens) (H.sapiens) BI281906 Sec61 beta subunit Sec61b 298068 NM_001106654 0000060 // protein import into nucleus, translocation // inferred from electronic annotation /// 0000060 // protein import into nucleus, translocation // not recorded /// 0030433 // ER-associated protein catabolic process // inferred from electronic annotation /// 0030433 // ER-associated protein catabolic process // not recorded /// 0030970 // retrograde protein transport, ER to cytosol // inferred from electronic annotation /// 0030970 // retrograde protein transport, ER to cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043022 // ribosome binding // not recorded /// 0048408 // epidermal growth factor binding // inferred from electronic annotation /// 0048408 // epidermal growth factor binding // not recorded 1388520_at BI278854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278854 /DB_XREF=gi:14926103 /DB_XREF=UI-R-CX0-bwx-f-12-0-UI.s1 /CLONE=UI-R-CX0-bwx-f-12-0-UI /FEA=EST /CNT=22 /TID=Rn.4062.1 /TIER=Stack /STK=15 /UG=Rn.4062 /UG_TITLE=ESTs BI278854 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0008432 // JUN kinase binding // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from electronic annotation 1388521_at BG380693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380693 /DB_XREF=gi:13305165 /DB_XREF=UI-R-CT0-bua-d-02-0-UI.s1 /CLONE=UI-R-CT0-bua-d-02-0-UI /FEA=EST /CNT=20 /TID=Rn.3148.1 /TIER=Stack /STK=15 /UG=Rn.3148 /UG_TITLE=ESTs, Highly similar to P5CS MOUSE DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHETASE (M.musculus) BG380693 aldehyde dehydrogenase 18 family, member A1 Aldh18a1 361755 NM_001108524 0006561 // proline biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004349 // glutamate 5-kinase activity // inferred from electronic annotation /// 0004349 // glutamate 5-kinase activity // not recorded /// 0004350 // glutamate-5-semialdehyde dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1388522_at AI170820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170820 /DB_XREF=gi:4134553 /DB_XREF=EST216759 /CLONE=RMUBB87 /FEA=EST /CNT=19 /TID=Rn.7549.1 /TIER=Stack /STK=15 /UG=Rn.7549 /UG_TITLE=ESTs AI170820 PTC7 protein phosphatase homolog (S. cerevisiae) Pptc7 304488 NM_001107141 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation 1388523_at BM392352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392352 /DB_XREF=gi:18192405 /DB_XREF=UI-R-DO1-ckp-n-02-0-UI.s1 /CLONE=UI-R-DO1-ckp-n-02-0-UI /FEA=EST /CNT=19 /TID=Rn.5953.1 /TIER=Stack /STK=15 /UG=Rn.5953 /UG_TITLE=ESTs BM392352 thioredoxin domain containing 12 (endoplasmic reticulum) Txndc12 298370 NM_001100840 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0019153 // protein-disulfide reductase (glutathione) activity // inferred from electronic annotation 1388524_at BF284328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284328 /DB_XREF=gi:11215398 /DB_XREF=EST448919 /CLONE=RGIEO40 /FEA=EST /CNT=18 /TID=Rn.9323.1 /TIER=Stack /STK=15 /UG=Rn.9323 /UG_TITLE=ESTs BF284328 1388525_at BE112999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112999 /DB_XREF=gi:8505104 /DB_XREF=UI-R-BJ1-awf-c-04-0-UI.s1 /CLONE=UI-R-BJ1-awf-c-04-0-UI /FEA=EST /CNT=18 /TID=Rn.4036.1 /TIER=Stack /STK=15 /UG=Rn.4036 /UG_TITLE=ESTs BE112999 phosphoinositide-3-kinase interacting protein 1 Pik3ip1 305472 NM_001017453 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1388526_at AI169075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169075 /DB_XREF=gi:3705383 /DB_XREF=EST214904 /CLONE=RKIBM70 /FEA=EST /CNT=18 /TID=Rn.3691.1 /TIER=Stack /STK=15 /UG=Rn.3691 /UG_TITLE=ESTs, Weakly similar to GTO1_RAT GLUTATHIONE TRANSFERASE OMEGA 1 (GSTO 1-1) (GLUTATHIONE-DEPENDENT DEHYDROASCORBATE REDUCTASE) (R.norvegicus) AI169075 glutathione transferase zeta 1 Gstz1 681913 NM_001109445 0009072 // aromatic amino acid family metabolic process // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016034 // maleylacetoacetate isomerase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation 1388527_at BI283685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283685 /DB_XREF=gi:14935686 /DB_XREF=UI-R-CW0s-ccg-e-12-0-UI.s1 /CLONE=UI-R-CW0s-ccg-e-12-0-UI /FEA=EST /CNT=17 /TID=Rn.8659.1 /TIER=Stack /STK=15 /UG=Rn.8659 /UG_TITLE=ESTs BI283685 1388528_at AW433875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433875 /DB_XREF=gi:6965182 /DB_XREF=UI-R-BJ0p-afm-f-06-0-UI.s1 /CLONE=UI-R-BJ0p-afm-f-06-0-UI /FEA=EST /CNT=17 /TID=Rn.7737.1 /TIER=Stack /STK=15 /UG=Rn.7737 /UG_TITLE=ESTs, Highly similar to FIBRILLARIN (M.musculus) AW433875 fibrillarin Fbl 292747 NM_001025643 0006364 // rRNA processing // inferred from electronic annotation /// 0006396 // RNA processing // inferred from direct assay /// 0008033 // tRNA processing // inferred from electronic annotation /// 0016074 // snoRNA metabolic process // not recorded 0001651 // dense fibrillar component // inferred from direct assay /// 0001652 // granular component // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0015030 // Cajal body // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1388529_at AI237372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237372 /DB_XREF=gi:3830878 /DB_XREF=EST233934 /CLONE=RPLCY24 /FEA=EST /CNT=17 /TID=Rn.25445.1 /TIER=Stack /STK=15 /UG=Rn.25445 /UG_TITLE=ESTs, Highly similar to RTC1_MOUSE RNA 3-terminal phosphate cyclase (RNA-3-phosphate cyclase) (RNA cyclase) (M.musculus) AI237372 RNA terminal phosphate cyclase domain 1 Rtcd1 295395 NM_001004227 0006396 // RNA processing // inferred from electronic annotation 0005654 // nucleoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003963 // RNA-3'-phosphate cyclase activity // inferred from electronic annotation /// 0016886 // ligase activity, forming phosphoric ester bonds // inferred from electronic annotation 1388530_at BM389459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389459 /DB_XREF=gi:18189507 /DB_XREF=UI-R-CN1-cjn-f-05-0-UI.s1 /CLONE=UI-R-CN1-cjn-f-05-0-UI /FEA=EST /CNT=20 /TID=Rn.7922.1 /TIER=Stack /STK=15 /UG=Rn.7922 /UG_TITLE=ESTs BM389459 CDC42 small effector 1 Cdc42se1 499672 NM_001039044 0006909 // phagocytosis // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1388531_at BF283382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283382 /DB_XREF=gi:11214452 /DB_XREF=EST447973 /CLONE=RGIEB25 /FEA=EST /CNT=18 /TID=Rn.22100.1 /TIER=Stack /STK=15 /UG=Rn.22100 /UG_TITLE=ESTs BF283382 progesterone receptor membrane component 2 Pgrmc2 361940 NM_001008374 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005496 // steroid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation 1388532_at AI599496 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599496 /DB_XREF=gi:4608544 /DB_XREF=EST251199 /CLONE=REMDZ14 /FEA=EST /CNT=17 /TID=Rn.15039.1 /TIER=Stack /STK=15 /UG=Rn.15039 /UG_TITLE=ESTs, Moderately similar to T08811 hypothetical protein DKFZp586M1523.1 (H.sapiens) AI599496 similar to hypothetical protein RGD1310571 361301 NM_001014147 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 1388533_at BM390302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390302 /DB_XREF=gi:18190355 /DB_XREF=UI-R-CN1-cjq-e-22-0-UI.s1 /CLONE=UI-R-CN1-cjq-e-22-0-UI /FEA=EST /CNT=17 /TID=Rn.17740.1 /TIER=Stack /STK=15 /UG=Rn.17740 /UG_TITLE=ESTs BM390302 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 Ctdsp1 363249 NM_001128079 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006470 // protein dephosphorylation // not recorded 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded /// 0008420 // CTD phosphatase activity // not recorded /// 0016791 // phosphatase activity // inferred from electronic annotation 1388534_at AA851369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851369 /DB_XREF=gi:2938909 /DB_XREF=EST194137 /CLONE=RPLAF77 /FEA=EST /CNT=16 /TID=Rn.1322.1 /TIER=Stack /STK=15 /UG=Rn.1322 /UG_TITLE=ESTs AA851369 1388535_at BF403698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403698 /DB_XREF=gi:11391673 /DB_XREF=UI-R-CA1-bix-l-10-0-UI.s1 /CLONE=UI-R-CA1-bix-l-10-0-UI /FEA=EST /CNT=16 /TID=Rn.29813.1 /TIER=Stack /STK=15 /UG=Rn.29813 /UG_TITLE=ESTs BF403698 similar to erythroid differentiation-related factor 1 RGD1306820 309069 NM_001107557 1388536_at BM391608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391608 /DB_XREF=gi:18191661 /DB_XREF=UI-R-DY0-ckr-l-21-0-UI.s1 /CLONE=UI-R-DY0-ckr-l-21-0-UI /FEA=EST /CNT=16 /TID=Rn.34262.1 /TIER=Stack /STK=15 /UG=Rn.34262 /UG_TITLE=ESTs, Highly similar to B35098 MHC class III histocompatibility antigen HLA-B-associated protein 2 (H.sapiens) BM391608 HLA-B associated transcript 2 Bat2 294250 NM_212462 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388537_at BF554891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554891 /DB_XREF=gi:11664621 /DB_XREF=UI-R-E0-cd-a-12-0-UI.r1 /CLONE=UI-R-E0-cd-a-12-0-UI /FEA=EST /CNT=16 /TID=Rn.2629.1 /TIER=Stack /STK=15 /UG=Rn.2629 /UG_TITLE=ESTs BF554891 4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans) Nipsnap1 360971 NM_001100730 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded 1388538_at AI179646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179646 /DB_XREF=gi:4135181 /DB_XREF=EST223370 /CLONE=RSPCJ96 /FEA=EST /CNT=16 /TID=Rn.65533.1 /TIER=Stack /STK=15 /UG=Rn.65533 /UG_TITLE=ESTs AI179646 ring-box 1 Rbx1 300084 NM_001034135 0016567 // protein ubiquitination // not recorded /// 0030163 // protein catabolic process // not recorded /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0045116 // protein neddylation // inferred from electronic annotation /// 0045116 // protein neddylation // not recorded 0005829 // cytosol // not recorded /// 0019005 // SCF ubiquitin ligase complex // inferred from electronic annotation /// 0019005 // SCF ubiquitin ligase complex // not recorded /// 0030891 // VCB complex // inferred from direct assay /// 0031463 // Cul3-RING ubiquitin ligase complex // not recorded /// 0031464 // Cul4A-RING ubiquitin ligase complex // not recorded /// 0031465 // Cul4B-RING ubiquitin ligase complex // not recorded 0004842 // ubiquitin-protein ligase activity // inferred by curator /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred by curator /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019788 // NEDD8 ligase activity // inferred from electronic annotation /// 0019788 // NEDD8 ligase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1388539_at BE113268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113268 /DB_XREF=gi:8505373 /DB_XREF=UI-R-BJ1-awd-e-01-0-UI.s1 /CLONE=UI-R-BJ1-awd-e-01-0-UI /FEA=EST /CNT=16 /TID=Rn.27944.1 /TIER=Stack /STK=15 /UG=Rn.27944 /UG_TITLE=ESTs, Weakly similar to neural plakophilin-related arm-repeat protein (Mus musculus) (M.musculus) BE113268 plakophilin 2 Pkp2 287925 NM_001100499 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030054 // cell junction // not recorded 0005488 // binding // inferred from electronic annotation 1388540_at BM390828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390828 /DB_XREF=gi:18190881 /DB_XREF=UI-R-CN1-cjo-j-18-0-UI.s1 /CLONE=UI-R-CN1-cjo-j-18-0-UI /FEA=EST /CNT=20 /TID=Rn.11948.1 /TIER=Stack /STK=15 /UG=Rn.11948 /UG_TITLE=ESTs BM390828 1388541_at BE116383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116383 /DB_XREF=gi:8508488 /DB_XREF=UI-R-BS1-ayc-f-03-0-UI.s1 /CLONE=UI-R-BS1-ayc-f-03-0-UI /FEA=EST /CNT=16 /TID=Rn.12649.1 /TIER=Stack /STK=15 /UG=Rn.12649 /UG_TITLE=ESTs BE116383 1388542_at BI283120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283120 /DB_XREF=gi:14934550 /DB_XREF=UI-R-CU0s-cca-c-03-0-UI.s1 /CLONE=UI-R-CU0s-cca-c-03-0-UI /FEA=EST /CNT=16 /TID=Rn.2957.1 /TIER=Stack /STK=15 /UG=Rn.2957 /UG_TITLE=ESTs BI283120 hypothetical LOC499392 /// unconventional SNARE in the ER 1 homolog (S. cerevisiae) LOC499392 /// Use1 290627 /// 499392 NM_001169100 /// XM_574708 0006888 // ER to Golgi vesicle-mediated transport // not recorded /// 0007041 // lysosomal transport // inferred from electronic annotation /// 0007041 // lysosomal transport // not recorded /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0030163 // protein catabolic process // not recorded /// 0032940 // secretion by cell // inferred from electronic annotation /// 0032940 // secretion by cell // not recorded 0005764 // lysosome // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388543_at BI291257 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291257 /DB_XREF=gi:14950629 /DB_XREF=UI-R-CV2-cgn-d-07-0-UI.s1 /CLONE=UI-R-CV2-cgn-d-07-0-UI /FEA=EST /CNT=15 /TID=Rn.53410.1 /TIER=Stack /STK=15 /UG=Rn.53410 /UG_TITLE=ESTs BI291257 phosphatidic acid phosphatase type 2 domain containing 1A Ppapdc1a 309014 NM_001191631 /// XM_001080468 /// XM_219376 0016020 // membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation 1388544_at BI294941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294941 /DB_XREF=gi:14957888 /DB_XREF=UI-R-DK0-ced-h-06-0-UI.s1 /CLONE=UI-R-DK0-ced-h-06-0-UI /FEA=EST /CNT=15 /TID=Rn.27158.1 /TIER=Stack /STK=15 /UG=Rn.27158 /UG_TITLE=ESTs BI294941 2,3-bisphosphoglycerate mutase Bpgm 296973 NM_199382 0006096 // glycolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0048821 // erythrocyte development // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0016868 // intramolecular transferase activity, phosphotransferases // inferred from electronic annotation /// 0046538 // 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity // inferred from electronic annotation 1388545_at BG373119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373119 /DB_XREF=gi:13269656 /DB_XREF=UI-R-CV1-bsf-f-11-0-UI.s1 /CLONE=UI-R-CV1-bsf-f-11-0-UI /FEA=EST /CNT=15 /TID=Rn.17014.1 /TIER=Stack /STK=15 /UG=Rn.17014 /UG_TITLE=ESTs BG373119 1388546_at AI013328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013328 /DB_XREF=gi:3227384 /DB_XREF=EST208003 /CLONE=RSPBJ58 /FEA=EST /CNT=15 /TID=Rn.7574.1 /TIER=Stack /STK=15 /UG=Rn.7574 /UG_TITLE=ESTs AI013328 1388547_at BE328951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE328951 /DB_XREF=gi:9202727 /DB_XREF=hq35b05.x1 /CLONE=IMAGE:3121329 /FEA=EST /CNT=15 /TID=Rn.6830.1 /TIER=Stack /STK=15 /UG=Rn.6830 /UG_TITLE=ESTs BE328951 claudin 4 Cldn4 304407 NM_001012022 0007565 // female pregnancy // inferred from expression pattern /// 0007623 // circadian rhythm // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0005923 // tight junction // not recorded /// 0009925 // basal plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016327 // apicolateral plasma membrane // inferred from direct assay /// 0016328 // lateral plasma membrane // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388548_at BI291421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291421 /DB_XREF=gi:14950943 /DB_XREF=UI-R-CV2-cgq-a-11-0-UI.s1 /CLONE=UI-R-CV2-cgq-a-11-0-UI /FEA=EST /CNT=15 /TID=Rn.79914.1 /TIER=Stack /STK=15 /UG=Rn.79914 /UG_TITLE=ESTs, Weakly similar to D1069.3.p (Caenorhabditis elegans) (C.elegans) BI291421 family with sequence similarity 126, member B Fam126b 316415 NM_001025710 0005622 // intracellular // not recorded 1388549_at AI228248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228248 /DB_XREF=gi:3812135 /DB_XREF=EST224943 /CLONE=RBRCS39 /FEA=EST /CNT=24 /TID=Rn.7633.1 /TIER=Stack /STK=14 /UG=Rn.7633 /UG_TITLE=ESTs AI228248 nuclear receptor coactivator 4 Ncoa4 619385 NM_001034007 /// NM_001034008 0009725 // response to hormone stimulus // inferred from expression pattern 0005739 // mitochondrion // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388550_at BI295122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295122 /DB_XREF=gi:14958252 /DB_XREF=UI-R-DK0-ceg-a-09-0-UI.s1 /CLONE=UI-R-DK0-ceg-a-09-0-UI /FEA=EST /CNT=41 /TID=Rn.22222.1 /TIER=Stack /STK=14 /UG=Rn.22222 /UG_TITLE=ESTs, Moderately similar to R23B MOUSE UV EXCISION REPAIR PROTEIN PROTEIN RAD23 HOMOLOG B (M.musculus) BI295122 RAD23 homolog B (S. cerevisiae) Rad23b 298012 NM_001025275 0000718 // nucleotide-excision repair, DNA damage removal // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006289 // nucleotide-excision repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0003684 // damaged DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388551_at AW434022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434022 /DB_XREF=gi:6965329 /DB_XREF=UI-R-BJ0p-afo-d-04-0-UI.s1 /CLONE=UI-R-BJ0p-afo-d-04-0-UI /FEA=EST /CNT=22 /TID=Rn.8628.1 /TIER=Stack /STK=14 /UG=Rn.8628 /UG_TITLE=ESTs AW434022 protocadherin gamma subfamily A, 1 /// protocadherin gamma subfamily A, 10 /// protocadherin gamma subfamily A, 11 /// protocadherin gamma subfamily A, 12 /// protocadherin gamma subfamily A, 2 /// protocadherin gamma subfamily A, 3 /// protocadherin gamma subfamily A, 5 /// protocadherin gamma subfamily A, 7 /// protocadherin gamma subfamily A, 8 /// protocadherin gamma subfamily A, 9 /// protocadherin gamma subfamily B, 7 /// protocadherin gamma subfamily B, 8 /// protocadherin gamma subfamily C, 3 Pcdhga1 /// Pcdhga10 /// Pcdhga11 /// Pcdhga12 /// Pcdhga2 /// Pcdhga3 /// Pcdhga5 /// Pcdhga7 /// Pcdhga8 /// Pcdhga9 /// Pcdhgb7 /// Pcdhgb8 /// Pcdhgc3 116782 /// 252895 /// 252897 /// 291635 /// 291637 /// 364843 /// 364844 /// 364845 /// 498846 /// 498847 /// 498849 /// 498850 /// 553129 NM_001012215 /// NM_001014773 /// NM_001037135 /// NM_001037137 /// NM_001037139 /// NM_001037140 /// NM_001037153 /// NM_001037154 /// NM_001037156 /// NM_001037158 /// NM_001037159 /// NM_001037337 /// NM_053943 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007283 // spermatogenesis // non-traceable author statement /// 0007283 // spermatogenesis // inferred from expression pattern 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388552_at BI283738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283738 /DB_XREF=gi:14935777 /DB_XREF=UI-R-CW0s-cch-b-07-0-UI.s1 /CLONE=UI-R-CW0s-cch-b-07-0-UI /FEA=EST /CNT=24 /TID=Rn.18277.1 /TIER=Stack /STK=14 /UG=Rn.18277 /UG_TITLE=ESTs, Highly similar to S27393 sphingomyelin phosphodiesterase (EC 3.1.4.12), acidic, splice form 1 precursor - mouse (M.musculus) BI283738 sphingomyelin phosphodiesterase 1, acid lysosomal Smpd1 308909 NM_001006997 0006685 // sphingomyelin catabolic process // inferred from electronic annotation /// 0042220 // response to cocaine // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0046513 // ceramide biosynthetic process // inferred from mutant phenotype 0005615 // extracellular space // inferred from direct assay /// 0042599 // lamellar body // inferred from direct assay 0004767 // sphingomyelin phosphodiesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1388553_at BI290534 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290534 /DB_XREF=gi:14949192 /DB_XREF=UI-R-DK0-cgd-d-06-0-UI.s1 /CLONE=UI-R-DK0-cgd-d-06-0-UI /FEA=EST /CNT=22 /TID=Rn.8014.1 /TIER=Stack /STK=14 /UG=Rn.8014 /UG_TITLE=ESTs BI290534 Hypothetical LOC290577 LOC290577 290577 XM_002725158 /// XM_002728376 0005488 // binding // inferred from electronic annotation 1388554_at AI229287 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229287 /DB_XREF=gi:3813174 /DB_XREF=EST225982 /CLONE=RBRDG50 /FEA=EST /CNT=47 /TID=Rn.17784.1 /TIER=Stack /STK=9 /UG=Rn.17784 /UG_TITLE=ESTs AI229287 basic leucine zipper and W2 domains 1 Bzw1 363232 NM_198789 0006350 // transcription // inferred from electronic annotation /// 0016070 // RNA metabolic process // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005737 // cytoplasm // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388555_at AI104292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104292 /DB_XREF=gi:3708667 /DB_XREF=EST213581 /CLONE=RHEBZ85 /FEA=EST /CNT=24 /TID=Rn.22457.1 /TIER=Stack /STK=14 /UG=Rn.22457 /UG_TITLE=ESTs AI104292 thioredoxin domain containing 17 Txndc17 287474 NM_001105805 0033209 // tumor necrosis factor-mediated signaling pathway // inferred from electronic annotation /// 0033209 // tumor necrosis factor-mediated signaling pathway // not recorded 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004601 // peroxidase activity // inferred from electronic annotation /// 0004601 // peroxidase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0009055 // electron carrier activity // not recorded /// 0047134 // protein-disulfide reductase activity // inferred from electronic annotation /// 0047134 // protein-disulfide reductase activity // not recorded 1388556_at BG381589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381589 /DB_XREF=gi:13306061 /DB_XREF=UI-R-CT0-bud-a-11-0-UI.s1 /CLONE=UI-R-CT0-bud-a-11-0-UI /FEA=EST /CNT=21 /TID=Rn.6692.1 /TIER=Stack /STK=14 /UG=Rn.6692 /UG_TITLE=ESTs BG381589 syntaxin 6 Stx6 60562 NM_031665 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006906 // vesicle fusion // inferred from electronic annotation /// 0006906 // vesicle fusion // not recorded /// 0007032 // endosome organization // inferred from electronic annotation /// 0007032 // endosome organization // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from direct assay /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0048193 // Golgi vesicle transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005769 // early endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1388557_at BF284922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284922 /DB_XREF=gi:11215992 /DB_XREF=EST449513 /CLONE=RGIEX76 /FEA=EST /CNT=20 /TID=Rn.33787.1 /TIER=Stack /STK=14 /UG=Rn.33787 /UG_TITLE=ESTs BF284922 tubulin, beta 2c Tubb2c 296554 NM_199094 0007017 // microtubule-based process // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation 0005829 // cytosol // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1388558_at AI171802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171802 /DB_XREF=gi:3711842 /DB_XREF=EST217784 /CLONE=RMUBQ89 /FEA=EST /CNT=21 /TID=Rn.8802.1 /TIER=Stack /STK=14 /UG=Rn.8802 /UG_TITLE=ESTs AI171802 1388559_at BG378098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378098 /DB_XREF=gi:13302570 /DB_XREF=UI-R-CT0-bvn-h-09-0-UI.s1 /CLONE=UI-R-CT0-bvn-h-09-0-UI /FEA=EST /CNT=21 /TID=Rn.15135.1 /TIER=Stack /STK=14 /UG=Rn.15135 /UG_TITLE=ESTs, Weakly similar to UBC2_HUMAN UBIQUITIN-CONJUGATING ENZYME E2-17 KD (R.norvegicus) BG378098 ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) Ube2m 361509 NM_001108471 0006464 // protein modification process // not recorded /// 0006464 // protein modification process // inferred from electronic annotation /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0045116 // protein neddylation // not recorded /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0018169 // ribosomal S6-glutamic acid ligase activity // not recorded /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation /// 0019788 // NEDD8 ligase activity // not recorded 1388560_at AI412580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412580 /DB_XREF=gi:4256084 /DB_XREF=EST240879 /CLONE=RBRDK02 /FEA=EST /CNT=20 /TID=Rn.14128.1 /TIER=Stack /STK=14 /UG=Rn.14128 /UG_TITLE=ESTs AI412580 WD repeat domain 77 Wdr77 310769 NM_001008771 0000387 // spliceosomal snRNP assembly // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0060528 // secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development // inferred from electronic annotation /// 0060528 // secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development // not recorded /// 0060770 // negative regulation of epithelial cell proliferation involved in prostate gland development // inferred from electronic annotation /// 0060770 // negative regulation of epithelial cell proliferation involved in prostate gland development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from electronic annotation /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded 1388561_at AI412886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412886 /DB_XREF=gi:4256390 /DB_XREF=EST241186 /CLONE=RBRED85 /FEA=EST /CNT=20 /TID=Rn.6534.2 /TIER=Stack /STK=14 /UG=Rn.6534 /LL=24584 /UG_GENE=Myl2 /UG_TITLE=Myosin, light polypeptide 2, alkali; ventricular, skeletal, slow AI412886 1388562_at BI282011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282011 /DB_XREF=gi:14932338 /DB_XREF=UI-R-CU0s-cbv-d-04-0-UI.s1 /CLONE=UI-R-CU0s-cbv-d-04-0-UI /FEA=EST /CNT=19 /TID=Rn.2463.1 /TIER=Stack /STK=14 /UG=Rn.2463 /UG_TITLE=ESTs BI282011 StAR-related lipid transfer (START) domain containing 7 Stard7 296128 NM_001106503 1388563_at AI169287 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169287 /DB_XREF=gi:3705595 /DB_XREF=EST215122 /CLONE=RKIBP73 /FEA=EST /CNT=25 /TID=Rn.33325.1 /TIER=Stack /STK=14 /UG=Rn.33325 /UG_TITLE=ESTs, Highly similar to T47146 hypothetical protein DKFZp761C169.1 (H.sapiens) AI169287 GC-rich promoter binding protein 1 Gpbp1 294734 NM_001106410 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded 1388564_at BF283612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283612 /DB_XREF=gi:11214682 /DB_XREF=EST448203 /CLONE=RGIEE58 /FEA=EST /CNT=20 /TID=Rn.884.1 /TIER=Stack /STK=14 /UG=Rn.884 /UG_TITLE=ESTs BF283612 similar to hypothetical protein FLJ20436 RGD1303127 300206 NM_001004244 1388565_at BI289536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289536 /DB_XREF=gi:14947209 /DB_XREF=UI-R-DK0-cff-c-01-0-UI.s1 /CLONE=UI-R-DK0-cff-c-01-0-UI /FEA=EST /CNT=19 /TID=Rn.19459.1 /TIER=Stack /STK=14 /UG=Rn.19459 /UG_TITLE=ESTs BI289536 spastic paraplegia 21 homolog-like /// spastic paraplegia 21 homolog (human) LOC100364022 /// Spg21 100364022 /// 300791 NM_001006987 /// XM_002727047 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0030140 // trans-Golgi network transport vesicle // not recorded /// 0030140 // trans-Golgi network transport vesicle // inferred from sequence or structural similarity 0042609 // CD4 receptor binding // not recorded /// 0042609 // CD4 receptor binding // inferred from sequence or structural similarity 1388566_at AI102215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102215 /DB_XREF=gi:3707020 /DB_XREF=EST211504 /CLONE=RBRCA64 /FEA=EST /CNT=19 /TID=Rn.1967.1 /TIER=Stack /STK=14 /UG=Rn.1967 /UG_TITLE=ESTs, Highly similar to LAS1 MOUSE LIM AND SH3 DOMAIN PROTEIN 1 (M.musculus) AI102215 LIM and SH3 protein 1 Lasp1 29278 NM_032613 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from direct assay /// 0006811 // ion transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0005938 // cell cortex // inferred from electronic annotation /// 0030864 // cortical actin cytoskeleton // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0015075 // ion transmembrane transporter activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1388567_at BF282947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282947 /DB_XREF=gi:11214017 /DB_XREF=EST447538 /CLONE=RGIDV40 /FEA=EST /CNT=18 /TID=Rn.12345.1 /TIER=Stack /STK=14 /UG=Rn.12345 /UG_TITLE=ESTs BF282947 THUMP domain containing 1 Thumpd1 309041 NM_001009688 1388568_at AA891553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891553 /DB_XREF=gi:3018432 /DB_XREF=EST195356 /CLONE=RHEAZ86 /FEA=EST /CNT=18 /TID=Rn.3463.1 /TIER=Stack /STK=14 /UG=Rn.3463 /UG_TITLE=ESTs, Highly similar to IF37 MOUSE EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 (M.musculus) AA891553 eukaryotic translation initiation factor 3, subunit D Eif3d 362952 NM_001004283 0001732 // formation of translation initiation complex // inferred from electronic annotation /// 0001732 // formation of translation initiation complex // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // not recorded /// 0006413 // translational initiation // inferred from sequence or structural similarity /// 0006413 // translational initiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from sequence or structural similarity /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from electronic annotation 0003743 // translation initiation factor activity // not recorded /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388569_at AI179984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179984 /DB_XREF=gi:3730622 /DB_XREF=EST223715 /CLONE=RSPCO51 /FEA=EST /CNT=21 /TID=Rn.16993.1 /TIER=Stack /STK=14 /UG=Rn.16993 /UG_TITLE=ESTs, Weakly similar to A26423 serine proteinase inhibitor 2.1 - rat (R.norvegicus) AI179984 serine (or cysteine) peptidase inhibitor, clade F, member 1 Serpinf1 287526 NM_177927 0001822 // kidney development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0007614 // short-term memory // inferred from direct assay /// 0016525 // negative regulation of angiogenesis // not recorded /// 0016525 // negative regulation of angiogenesis // traceable author statement /// 0016525 // negative regulation of angiogenesis // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0050728 // negative regulation of inflammatory response // inferred from mutant phenotype /// 0050769 // positive regulation of neurogenesis // inferred from electronic annotation /// 0050769 // positive regulation of neurogenesis // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0060770 // negative regulation of epithelial cell proliferation involved in prostate gland development // inferred from electronic annotation /// 0060770 // negative regulation of epithelial cell proliferation involved in prostate gland development // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0004867 // serine-type endopeptidase inhibitor activity // traceable author statement /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation 1388570_at AI232494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232494 /DB_XREF=gi:3816374 /DB_XREF=EST229182 /CLONE=RKICC39 /FEA=EST /CNT=19 /TID=Rn.22044.1 /TIER=Stack /STK=14 /UG=Rn.22044 /UG_TITLE=ESTs AI232494 coenzyme Q9 homolog (S. cerevisiae) Coq9 498909 NM_001035257 0006744 // ubiquinone biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1388571_at BF285314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285314 /DB_XREF=gi:11216384 /DB_XREF=EST449905 /CLONE=RGIFD40 /FEA=EST /CNT=18 /TID=Rn.8682.1 /TIER=Stack /STK=14 /UG=Rn.8682 /UG_TITLE=ESTs, Highly similar to synaptogyrin 2 (Rattus norvegicus) (R.norvegicus) BF285314 1388572_at BM389961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389961 /DB_XREF=gi:18190014 /DB_XREF=UI-R-CN1-cjo-c-10-0-UI.s1 /CLONE=UI-R-CN1-cjo-c-10-0-UI /FEA=EST /CNT=17 /TID=Rn.38684.1 /TIER=Stack /STK=14 /UG=Rn.38684 /UG_TITLE=ESTs BM389961 similar to jumonji domain containing 2B LOC301128 301128 NM_001044236 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1388573_at BF288140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288140 /DB_XREF=gi:11219210 /DB_XREF=EST452731 /CLONE=RGIGQ01 /FEA=EST /CNT=17 /TID=Rn.36144.1 /TIER=Stack /STK=14 /UG=Rn.36144 /UG_TITLE=ESTs BF288140 AlkB, alkylation repair homolog (E. coli) Alkbh 362766 NM_001108718 0006281 // DNA repair // inferred from electronic annotation 1388574_at BG670966 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670966 /DB_XREF=gi:13893065 /DB_XREF=DRNBJE12 /CLONE=DRNBJE12 /FEA=EST /CNT=17 /TID=Rn.14939.1 /TIER=Stack /STK=14 /UG=Rn.14939 /UG_TITLE=ESTs, Highly similar to SYW MOUSE TRYPTOPHANYL-TRNA SYNTHETASE (M.musculus) BG670966 tryptophanyl-tRNA synthetase Wars 314442 NM_001013170 0001525 // angiogenesis // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006436 // tryptophanyl-tRNA aminoacylation // inferred from electronic annotation /// 0045765 // regulation of angiogenesis // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004830 // tryptophan-tRNA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1388575_at AA943740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943740 /DB_XREF=gi:3103656 /DB_XREF=EST199239 /CLONE=RBRAP09 /FEA=EST /CNT=17 /TID=Rn.4180.1 /TIER=Stack /STK=14 /UG=Rn.4180 /UG_TITLE=ESTs AA943740 1388576_at BF281368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281368 /DB_XREF=gi:11212438 /DB_XREF=EST445959 /CLONE=RGIAD79 /FEA=EST /CNT=19 /TID=Rn.2829.1 /TIER=Stack /STK=14 /UG=Rn.2829 /UG_TITLE=ESTs, Highly similar to IF39_HUMAN EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 9 (H.sapiens) BF281368 eukaryotic translation initiation factor 3, subunit B Eif3b 288516 NM_001031640 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // not recorded /// 0006413 // translational initiation // inferred from sequence or structural similarity /// 0006413 // translational initiation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // not recorded /// 0006446 // regulation of translational initiation // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003743 // translation initiation factor activity // not recorded /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded 1388577_at BI274650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274650 /DB_XREF=gi:14885758 /DB_XREF=UI-R-CX0-bws-d-06-0-UI.s1 /CLONE=UI-R-CX0-bws-d-06-0-UI /FEA=EST /CNT=18 /TID=Rn.17585.1 /TIER=Stack /STK=14 /UG=Rn.17585 /UG_TITLE=ESTs BI274650 1388578_at BI288621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288621 /DB_XREF=gi:14945387 /DB_XREF=UI-R-DK0-cdd-a-06-0-UI.s1 /CLONE=UI-R-DK0-cdd-a-06-0-UI /FEA=EST /CNT=17 /TID=Rn.12992.1 /TIER=Stack /STK=14 /UG=Rn.12992 /UG_TITLE=ESTs, Weakly similar to B0432.8.p (Caenorhabditis elegans) (C.elegans) BI288621 similar to B0432.8 LOC289378 289378 NM_001105987 0016888 // endodeoxyribonuclease activity, producing 5'-phosphomonoesters // inferred from electronic annotation 1388579_at AI176841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176841 /DB_XREF=gi:3727479 /DB_XREF=EST220443 /CLONE=ROVBX58 /FEA=EST /CNT=17 /TID=Rn.17455.1 /TIER=Stack /STK=14 /UG=Rn.17455 /UG_TITLE=ESTs AI176841 solute carrier family 25, member 42 Slc25a42 689414 NM_001127590 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1388580_at AI100850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI100850 /DB_XREF=gi:3705879 /DB_XREF=EST210139 /CLONE=RBRBB56 /FEA=EST /CNT=17 /TID=Rn.24988.1 /TIER=Stack /STK=14 /UG=Rn.24988 /UG_TITLE=ESTs AI100850 pygopus 2 Pygo2 295251 NM_001106447 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0002088 // lens development in camera-type eye // inferred from electronic annotation /// 0002088 // lens development in camera-type eye // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0048589 // developmental growth // inferred from electronic annotation /// 0048589 // developmental growth // not recorded /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388581_at AI317868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI317868 /DB_XREF=gi:4033135 /DB_XREF=EST234539 /CLONE=RPPAA83 /FEA=EST /CNT=17 /TID=Rn.1650.2 /TIER=Stack /STK=14 /UG=Rn.1650 /UG_TITLE=ESTs, Moderately similar to AF177862 1 HN1 protein (H.sapiens) AI317868 hematological and neurological expressed 1 Hn1 287828 NM_001005876 0005634 // nucleus // inferred from electronic annotation 1388582_at BM392043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392043 /DB_XREF=gi:18192096 /DB_XREF=UI-R-DO1-ckp-a-03-0-UI.s1 /CLONE=UI-R-DO1-ckp-a-03-0-UI /FEA=EST /CNT=16 /TID=Rn.7389.1 /TIER=Stack /STK=14 /UG=Rn.7389 /UG_TITLE=ESTs BM392043 proteasome (prosome, macropain) activator subunit 3 Psme3 287716 NM_001011894 0002523 // leukocyte migration involved in inflammatory response // inferred from mutant phenotype /// 0002675 // positive regulation of acute inflammatory response // inferred from mutant phenotype /// 0002687 // positive regulation of leukocyte migration // inferred from mutant phenotype /// 0006094 // gluconeogenesis // inferred from direct assay /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006094 // gluconeogenesis // traceable author statement /// 0006796 // phosphate metabolic process // inferred from direct assay /// 0006950 // response to stress // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from sequence or structural similarity /// 0007568 // aging // inferred from expression pattern /// 0008217 // regulation of blood pressure // inferred from mutant phenotype /// 0009308 // amine metabolic process // inferred from electronic annotation /// 0009308 // amine metabolic process // inferred from sequence or structural similarity /// 0010828 // positive regulation of glucose transport // inferred from direct assay /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0032094 // response to food // inferred from expression pattern /// 0042593 // glucose homeostasis // inferred from mutant phenotype /// 0042755 // eating behavior // inferred from mutant phenotype /// 0042981 // regulation of apoptosis // not recorded /// 0046838 // phosphorylated carbohydrate dephosphorylation // inferred from direct assay /// 0051156 // glucose 6-phosphate metabolic process // inferred from direct assay /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0055088 // lipid homeostasis // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0061136 // regulation of proteasomal protein catabolic process // not recorded 0000502 // proteasome complex // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0008537 // proteasome activator complex // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence or structural similarity 0002039 // p53 binding // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004346 // glucose-6-phosphatase activity // inferred from direct assay /// 0004346 // glucose-6-phosphatase activity // inferred from electronic annotation /// 0004346 // glucose-6-phosphatase activity // traceable author statement /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008131 // primary amine oxidase activity // inferred from electronic annotation /// 0008131 // primary amine oxidase activity // inferred from direct assay /// 0008131 // primary amine oxidase activity // inferred from sequence or structural similarity /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048038 // quinone binding // inferred from electronic annotation /// 0048038 // quinone binding // inferred from sequence or structural similarity /// 0061133 // endopeptidase activator activity // not recorded /// 0070215 // MDM2 binding // not recorded 1388583_at BF283398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283398 /DB_XREF=gi:11214468 /DB_XREF=EST447989 /CLONE=RGIEB46 /FEA=EST /CNT=16 /TID=Rn.1456.1 /TIER=Stack /STK=14 /UG=Rn.1456 /UG_TITLE=ESTs BF283398 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1) Cxcl12 24772 NM_001033882 /// NM_001033883 /// NM_022177 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001667 // ameboidal cell migration // inferred from electronic annotation /// 0001667 // ameboidal cell migration // not recorded /// 0001764 // neuron migration // inferred from direct assay /// 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0006955 // immune response // inferred from electronic annotation /// 0007281 // germ cell development // inferred from electronic annotation /// 0007281 // germ cell development // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0008045 // motor axon guidance // inferred from electronic annotation /// 0008045 // motor axon guidance // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008344 // adult locomotory behavior // inferred from mutant phenotype /// 0008354 // germ cell migration // inferred from electronic annotation /// 0008354 // germ cell migration // not recorded /// 0009314 // response to radiation // inferred from expression pattern /// 0009408 // response to heat // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0016477 // cell migration // traceable author statement /// 0022029 // telencephalon cell migration // inferred from mutant phenotype /// 0030334 // regulation of cell migration // not recorded /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030335 // positive regulation of cell migration // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from mutant phenotype /// 0033603 // positive regulation of dopamine secretion // inferred from direct assay /// 0042098 // T cell proliferation // inferred from electronic annotation /// 0042098 // T cell proliferation // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0048842 // positive regulation of axon extension involved in axon guidance // inferred from mutant phenotype /// 0050930 // induction of positive chemotaxis // inferred from electronic annotation /// 0050930 // induction of positive chemotaxis // not recorded /// 0051929 // positive regulation of calcium ion transport via voltage-gated calcium channel activity // inferred from direct assay /// 0090026 // positive regulation of monocyte chemotaxis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // not recorded /// 0008009 // chemokine activity // traceable author statement 1388584_at AI598881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598881 /DB_XREF=gi:4607929 /DB_XREF=EST250584 /CLONE=REMDX12 /FEA=EST /CNT=16 /TID=Rn.8097.1 /TIER=Stack /STK=14 /UG=Rn.8097 /UG_TITLE=ESTs AI598881 1388585_at BF281959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281959 /DB_XREF=gi:11213029 /DB_XREF=EST446550 /CLONE=RGIDA09 /FEA=EST /CNT=16 /TID=Rn.22423.1 /TIER=Stack /STK=14 /UG=Rn.22423 /UG_TITLE=ESTs BF281959 1388586_at BG372397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372397 /DB_XREF=gi:13268934 /DB_XREF=UI-R-CV1-bsc-c-07-0-UI.s1 /CLONE=UI-R-CV1-bsc-c-07-0-UI /FEA=EST /CNT=22 /TID=Rn.1751.1 /TIER=Stack /STK=14 /UG=Rn.1751 /UG_TITLE=ESTs BG372397 synaptojanin 1 Synj1 85238 NM_053476 0006836 // neurotransmitter transport // not recorded /// 0006897 // endocytosis // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0007612 // learning // not recorded /// 0014015 // positive regulation of gliogenesis // inferred from mutant phenotype /// 0016082 // synaptic vesicle priming // not recorded /// 0016191 // synaptic vesicle uncoating // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030384 // phosphoinositide metabolic process // not recorded /// 0032526 // response to retinoic acid // inferred from mutant phenotype /// 0034097 // response to cytokine stimulus // inferred from mutant phenotype /// 0046856 // phosphoinositide dephosphorylation // not recorded /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from mutant phenotype /// 0048488 // synaptic vesicle endocytosis // not recorded /// 0048489 // synaptic vesicle transport // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030117 // membrane coat // not recorded /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from direct assay /// 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0004439 // phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity // inferred from electronic annotation /// 0004439 // phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017120 // polyphosphoinositide phosphatase activity // not recorded /// 0017124 // SH3 domain binding // inferred from direct assay /// 0017124 // SH3 domain binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from direct assay /// 0034595 // phosphoinositide 5-phosphatase activity // not recorded 1388587_at AI176519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176519 /DB_XREF=gi:3727157 /DB_XREF=EST220105 /CLONE=ROVBS94 /FEA=EST /CNT=17 /TID=Rn.23638.1 /TIER=Stack /STK=14 /UG=Rn.23638 /UG_TITLE=ESTs, Highly similar to RADIATION-INDUCIBLE IMMEDIATE-EARLY GENE IEX-1 (M.musculus) AI176519 immediate early response 3 Ier3 294235 NM_212505 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1388588_at AI236101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236101 /DB_XREF=gi:3829607 /DB_XREF=EST232663 /CLONE=ROVDB42 /FEA=EST /CNT=17 /TID=Rn.19179.1 /TIER=Stack /STK=14 /UG=Rn.19179 /UG_TITLE=ESTs, Highly similar to JC7107 development related unidentified 27K protein - mouse (M.musculus) AI236101 mammary tumor virus receptor 2 Mtvr2 309170 NM_001015013 0004872 // receptor activity // inferred from electronic annotation 1388589_at BG381046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381046 /DB_XREF=gi:13305518 /DB_XREF=UI-R-CT0-bug-f-01-0-UI.s1 /CLONE=UI-R-CT0-bug-f-01-0-UI /FEA=EST /CNT=16 /TID=Rn.18027.1 /TIER=Stack /STK=14 /UG=Rn.18027 /UG_TITLE=ESTs BG381046 DOT1-like, histone H3 methyltransferase (S. cerevisiae) Dot1l 362831 NM_001108733 0016571 // histone methylation // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0042054 // histone methyltransferase activity // not recorded 1388590_at AI010455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010455 /DB_XREF=gi:3224287 /DB_XREF=EST204906 /CLONE=RLUBZ66 /FEA=EST /CNT=16 /TID=Rn.4312.1 /TIER=Stack /STK=14 /UG=Rn.4312 /UG_TITLE=ESTs, Weakly similar to DNA-directed RNA polymerase I like (Caenorhabditis elegans) (C.elegans) AI010455 zinc ribbon domain containing, 1 Znrd1 361784 NM_001166300 /// NM_213567 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388591_at BM383669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383669 /DB_XREF=gi:18183722 /DB_XREF=UI-R-DM1-cka-p-10-0-UI.s1 /CLONE=UI-R-DM1-cka-p-10-0-UI /FEA=EST /CNT=15 /TID=Rn.39355.1 /TIER=Stack /STK=14 /UG=Rn.39355 /UG_TITLE=ESTs BM383669 DNA cross-link repair 1B, PSO2 homolog (S. cerevisiae) Dclre1b 310745 NM_001025687 0000075 // cell cycle checkpoint // not recorded /// 0000075 // cell cycle checkpoint // inferred from sequence or structural similarity /// 0000723 // telomere maintenance // not recorded /// 0000723 // telomere maintenance // inferred from sequence or structural similarity /// 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0031627 // telomeric loop formation // inferred from sequence or structural similarity /// 0031848 // protection from non-homologous end joining at telomere // not recorded /// 0031848 // protection from non-homologous end joining at telomere // inferred from sequence or structural similarity /// 0031860 // telomeric 3' overhang formation // inferred from sequence or structural similarity 0000781 // chromosome, telomeric region // not recorded /// 0000781 // chromosome, telomeric region // inferred from sequence or structural similarity /// 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008409 // 5'-3' exonuclease activity // not recorded /// 0008409 // 5'-3' exonuclease activity // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation 1388592_at BI298958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298958 /DB_XREF=gi:14975238 /DB_XREF=UI-R-CV2-chp-e-07-0-UI.s1 /CLONE=UI-R-CV2-chp-e-07-0-UI /FEA=EST /CNT=15 /TID=Rn.49412.1 /TIER=Stack /STK=14 /UG=Rn.49412 /UG_TITLE=ESTs BI298958 1388593_at AI176465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176465 /DB_XREF=gi:3727103 /DB_XREF=EST220050 /CLONE=ROVBS15 /FEA=EST /CNT=15 /TID=Rn.23811.1 /TIER=Stack /STK=14 /UG=Rn.23811 /UG_TITLE=ESTs AI176465 Mitogen-activated protein kinase 8 interacting protein 3 Mapk8ip3 302983 NM_001100673 0001701 // in utero embryonic development // not recorded /// 0007254 // JNK cascade // not recorded /// 0007257 // activation of JUN kinase activity // not recorded /// 0007411 // axon guidance // not recorded /// 0007585 // respiratory gaseous exchange // not recorded /// 0008104 // protein localization // not recorded /// 0009791 // post-embryonic development // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0030900 // forebrain development // not recorded /// 0031175 // neuron projection development // inferred from expression pattern /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0048286 // lung alveolus development // not recorded /// 0060425 // lung morphogenesis // not recorded 0005625 // soluble fraction // not recorded /// 0005737 // cytoplasm // not recorded /// 0005790 // smooth endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // not recorded /// 0030425 // dendrite // not recorded /// 0030673 // axolemma // not recorded /// 0043005 // neuron projection // inferred from direct assay 0016301 // kinase activity // inferred from electronic annotation /// 0031434 // mitogen-activated protein kinase kinase binding // inferred from physical interaction 1388594_at BG371453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371453 /DB_XREF=gi:13267990 /DB_XREF=UI-R-CW0-bvv-c-09-0-UI.s1 /CLONE=UI-R-CW0-bvv-c-09-0-UI /FEA=EST /CNT=15 /TID=Rn.6461.1 /TIER=Stack /STK=14 /UG=Rn.6461 /UG_TITLE=ESTs, Highly similar to T08724 hypothetical protein DKFZp566D213.1 (H.sapiens) BG371453 cysteine-rich with EGF-like domains 1 Creld1 312638 NM_001024783 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1388595_at AI102995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102995 /DB_XREF=gi:3707617 /DB_XREF=EST212284 /CLONE=REMBV88 /FEA=EST /CNT=15 /TID=Rn.22387.1 /TIER=Stack /STK=14 /UG=Rn.22387 /UG_TITLE=ESTs AI102995 DEAH (Asp-Glu-Ala-His) box polypeptide 30 Dhx30 367172 NM_001013249 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1388596_at AI411057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411057 /DB_XREF=gi:4254561 /DB_XREF=EST239351 /CLONE=RKIEP60 /FEA=EST /CNT=15 /TID=Rn.22654.1 /TIER=Stack /STK=14 /UG=Rn.22654 /UG_TITLE=ESTs AI411057 coactosin-like 1 (Dictyostelium) Cotl1 361422 NM_001108452 0050832 // defense response to fungus // inferred from electronic annotation /// 0050832 // defense response to fungus // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded 1388597_at AI104571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104571 /DB_XREF=gi:3708908 /DB_XREF=EST213860 /CLONE=RHECF39 /FEA=EST /CNT=15 /TID=Rn.28286.1 /TIER=Stack /STK=14 /UG=Rn.28286 /UG_TITLE=ESTs, Weakly similar to norvegicus myosin binding protein H (Rattus norvegicus) (R.norvegicus) AI104571 myosin binding protein C, cardiac Mybpc3 295929 NM_001106490 0002027 // regulation of heart rate // inferred from electronic annotation /// 0002027 // regulation of heart rate // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0006936 // muscle contraction // inferred from electronic annotation /// 0006936 // muscle contraction // not recorded /// 0006942 // regulation of striated muscle contraction // inferred from expression pattern /// 0007155 // cell adhesion // inferred from electronic annotation /// 0008016 // regulation of heart contraction // not recorded /// 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0031034 // myosin filament assembly // inferred from electronic annotation /// 0031034 // myosin filament assembly // not recorded /// 0045214 // sarcomere organization // inferred from electronic annotation /// 0045214 // sarcomere organization // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0060048 // cardiac muscle contraction // inferred from expression pattern /// 0060048 // cardiac muscle contraction // not recorded /// 0060048 // cardiac muscle contraction // inferred from electronic annotation 0005863 // striated muscle myosin thick filament // inferred from direct assay /// 0005863 // striated muscle myosin thick filament // not recorded /// 0030016 // myofibril // not recorded /// 0030016 // myofibril // inferred from electronic annotation /// 0030017 // sarcomere // not recorded /// 0030017 // sarcomere // inferred from electronic annotation /// 0031672 // A band // inferred from electronic annotation /// 0031672 // A band // not recorded /// 0032982 // myosin filament // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0008307 // structural constituent of muscle // not recorded /// 0017022 // myosin binding // not recorded /// 0032036 // myosin heavy chain binding // inferred from electronic annotation /// 0032036 // myosin heavy chain binding // not recorded 1388598_at BI281230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281230 /DB_XREF=gi:14930753 /DB_XREF=UI-R-CT0s-cat-h-07-0-UI.s1 /CLONE=UI-R-CT0s-cat-h-07-0-UI /FEA=EST /CNT=16 /TID=Rn.12490.1 /TIER=Stack /STK=14 /UG=Rn.12490 /UG_TITLE=ESTs BI281230 hypothetical protein LOC691995 LOC691995 691995 NM_001103353 1388599_at BE107098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107098 /DB_XREF=gi:8499203 /DB_XREF=UI-R-BS1-ayp-g-12-0-UI.s1 /CLONE=UI-R-BS1-ayp-g-12-0-UI /FEA=EST /CNT=16 /TID=Rn.9604.1 /TIER=Stack /STK=14 /UG=Rn.9604 /UG_TITLE=ESTs BE107098 1388600_at AI011713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011713 /DB_XREF=gi:3225545 /DB_XREF=EST206164 /CLONE=ROVAZ21 /FEA=EST /CNT=16 /TID=Rn.17067.1 /TIER=Stack /STK=14 /UG=Rn.17067 /UG_TITLE=ESTs, Moderately similar to I60307 beta-galactosidase, alpha peptide - Escherichia coli (E.coli) AI011713 1388601_at AI598410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598410 /DB_XREF=gi:4607458 /DB_XREF=EST250113 /CLONE=REMDQ19 /FEA=EST /CNT=15 /TID=Rn.16564.1 /TIER=Stack /STK=14 /UG=Rn.16564 /UG_TITLE=ESTs AI598410 activator of basal transcription 1 Abt1 306960 NM_001025674 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0021522 // spinal cord motor neuron differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016251 // general RNA polymerase II transcription factor activity // not recorded 1388602_at AI237358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237358 /DB_XREF=gi:3830864 /DB_XREF=EST233920 /CLONE=RPLCY05 /FEA=EST /CNT=15 /TID=Rn.16172.1 /TIER=Stack /STK=14 /UG=Rn.16172 /UG_TITLE=ESTs, Highly similar to I55608 complement factor D (EC 3.4.21.46) precursor - rat (R.norvegicus) AI237358 complement factor D (adipsin) Cfd 54249 NM_001077642 0006508 // proteolysis // inferred from electronic annotation /// 0006957 // complement activation, alternative pathway // inferred from electronic annotation /// 0006957 // complement activation, alternative pathway // not recorded /// 0007219 // Notch signaling pathway // inferred from mutant phenotype /// 0045087 // innate immune response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0031093 // platelet alpha granule lumen // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004175 // endopeptidase activity // inferred from direct assay /// 0004252 // serine-type endopeptidase activity // traceable author statement /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1388603_a_at BM384289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384289 /DB_XREF=gi:18184342 /DB_XREF=UI-R-DY0-ckr-b-20-0-UI.s1 /CLONE=UI-R-DY0-ckr-b-20-0-UI /FEA=EST /CNT=14 /TID=Rn.1180.1 /TIER=Stack /STK=14 /UG=Rn.1180 /UG_TITLE=ESTs BM384289 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) Isca1 290985 NM_181626 0016226 // iron-sulfur cluster assembly // inferred from electronic annotation /// 0050886 // endocrine process // non-traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation 1388604_at BI276959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276959 /DB_XREF=gi:14922372 /DB_XREF=UI-R-CW0-bxo-e-02-0-UI.s1 /CLONE=UI-R-CW0-bxo-e-02-0-UI /FEA=EST /CNT=14 /TID=Rn.38090.1 /TIER=Stack /STK=14 /UG=Rn.38090 /UG_TITLE=ESTs, Moderately similar to CAQC RAT CALSEQUESTRIN, CARDIAC MUSCLE ISOFORM PRECURSOR (R.norvegicus) BI276959 calsequestrin 1 (fast-twitch, skeletal muscle) Casq1 686019 NM_001159594 0006950 // response to stress // inferred from expression pattern /// 0007519 // skeletal muscle tissue development // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0014894 // response to denervation involved in regulation of muscle adaptation // inferred from expression pattern /// 0051282 // regulation of sequestering of calcium ion // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0014802 // terminal cisterna // inferred from direct assay /// 0014804 // terminal cisterna lumen // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // not recorded /// 0030016 // myofibril // inferred from direct assay /// 0030315 // T-tubule // inferred from direct assay /// 0031674 // I band // inferred from direct assay /// 0033018 // sarcoplasmic reticulum lumen // not recorded /// 0042383 // sarcolemma // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation 1388605_at BM384938 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384938 /DB_XREF=gi:18184991 /DB_XREF=UI-R-CN1-cjl-f-06-0-UI.s2 /CLONE=UI-R-CN1-cjl-f-06-0-UI /FEA=EST /CNT=14 /TID=Rn.54033.1 /TIER=Stack /STK=14 /UG=Rn.54033 /UG_TITLE=ESTs, Weakly similar to WDNM RAT WDNM1 PROTEIN PRECURSOR (R.norvegicus) BM384938 0005576 // extracellular region // inferred from electronic annotation 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1388606_at BI300748 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300748 /DB_XREF=gi:14977028 /DB_XREF=UI-R-CV2-cij-a-05-0-UI.s1 /CLONE=UI-R-CV2-cij-a-05-0-UI /FEA=EST /CNT=14 /TID=Rn.60868.1 /TIER=Stack /STK=14 /UG=Rn.60868 /UG_TITLE=ESTs BI300748 1388607_at AI177408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177408 /DB_XREF=gi:3728046 /DB_XREF=EST221028 /CLONE=RPLBY77 /FEA=EST /CNT=14 /TID=Rn.12696.1 /TIER=Stack /STK=14 /UG=Rn.12696 /UG_TITLE=ESTs AI177408 SMAD specific E3 ubiquitin protein ligase 2 Smurf2 303614 NM_001107061 0006464 // protein modification process // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0030509 // BMP signaling pathway // not recorded /// 0030579 // ubiquitin-dependent SMAD protein catabolic process // not recorded 0000151 // ubiquitin ligase complex // not recorded /// 0005622 // intracellular // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005160 // transforming growth factor beta receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046332 // SMAD binding // inferred from physical interaction /// 0046332 // SMAD binding // not recorded 1388608_x_at AI577319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577319 /DB_XREF=gi:4561695 /DB_XREF=UI-R-AD0-wg-g-12-0-UI.s1 /CLONE=UI-R-AD0-wg-g-12-0-UI /FEA=EST /CNT=14 /TID=Rn.11229.2 /TIER=Stack /STK=14 /UG=Rn.11229 /LL=25632 /UG_GENE=Hba1 /UG_TITLE=Hemoglobin, alpha 1 AI577319 hemoglobin alpha, adult chain 2 /// hemoglobin alpha 2 chain Hba-a2 /// LOC360504 25632 /// 360504 NM_001007722 /// NM_013096 0001701 // in utero embryonic development // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0015671 // oxygen transport // inferred from electronic annotation /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0048821 // erythrocyte development // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0051930 // regulation of sensory perception of pain // inferred from mutant phenotype 0005625 // soluble fraction // inferred from direct assay /// 0005833 // hemoglobin complex // inferred from direct assay /// 0005833 // hemoglobin complex // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // not recorded 0001540 // beta-amyloid binding // inferred from direct assay /// 0005344 // oxygen transporter activity // inferred by curator /// 0005344 // oxygen transporter activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0019825 // oxygen binding // inferred from direct assay /// 0019825 // oxygen binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from direct assay /// 0020037 // heme binding // inferred from electronic annotation /// 0043177 // organic acid binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1388609_at AI406723 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406723 /DB_XREF=gi:4250227 /DB_XREF=EST235010 /CLONE=ROVDV90 /FEA=EST /CNT=14 /TID=Rn.3178.1 /TIER=Stack /STK=14 /UG=Rn.3178 /UG_TITLE=ESTs AI406723 DNA-damage inducible protein 2 Ddi2 313668 NM_001034149 0006508 // proteolysis // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation 1388610_at BF399495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399495 /DB_XREF=gi:11384503 /DB_XREF=UI-R-CA1-bjb-d-08-0-UI.s1 /CLONE=UI-R-CA1-bjb-d-08-0-UI /FEA=EST /CNT=14 /TID=Rn.64403.1 /TIER=Stack /STK=14 /UG=Rn.64403 /UG_TITLE=ESTs BF399495 1388611_at AW252817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252817 /DB_XREF=gi:6596408 /DB_XREF=UI-R-BJ0-ael-a-12-0-UI.s1 /CLONE=UI-R-BJ0-ael-a-12-0-UI /FEA=EST /CNT=14 /TID=Rn.11547.1 /TIER=Stack /STK=14 /UG=Rn.11547 /UG_TITLE=ESTs, Weakly similar to A53004 transcription elongation factor S-II - rat (R.norvegicus) AW252817 transcription elongation factor A (SII), 3 Tcea3 298559 NM_001015008 0006350 // transcription // inferred from electronic annotation /// 0006354 // RNA elongation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003711 // transcription elongation regulator activity // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1388612_at AI599462 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599462 /DB_XREF=gi:4608510 /DB_XREF=EST251165 /CLONE=REMDW47 /FEA=EST /CNT=34 /TID=Rn.269.1 /TIER=Stack /STK=13 /UG=Rn.269 /UG_TITLE=ESTs AI599462 OCIA domain containing 1 Ociad1 289590 NM_001013874 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005768 // endosome // inferred from electronic annotation 0005515 // protein binding // not recorded 1388613_at BE113034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113034 /DB_XREF=gi:8505139 /DB_XREF=UI-R-BJ1-awf-f-04-0-UI.s1 /CLONE=UI-R-BJ1-awf-f-04-0-UI /FEA=EST /CNT=22 /TID=Rn.3442.1 /TIER=Stack /STK=13 /UG=Rn.3442 /UG_TITLE=ESTs, Weakly similar to T45057 hypothetical protein Y39B6B.ee (imported) - Caenorhabditis elegans (C.elegans) BE113034 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) Isca1 290985 NM_181626 0016226 // iron-sulfur cluster assembly // inferred from electronic annotation /// 0050886 // endocrine process // non-traceable author statement 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation 1388614_at BM386768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386768 /DB_XREF=gi:18186821 /DB_XREF=UI-R-CN1-cjg-n-24-0-UI.s1 /CLONE=UI-R-CN1-cjg-n-24-0-UI /FEA=EST /CNT=26 /TID=Rn.13661.1 /TIER=Stack /STK=13 /UG=Rn.13661 /UG_TITLE=ESTs, Highly similar to S145_HUMAN SPLICEOSOME ASSOCIATED PROTEIN 145 (H.sapiens) BM386768 splicing factor 3b, subunit 2 Sf3b2 293671 NM_001106326 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388615_at AI410112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410112 /DB_XREF=gi:4253616 /DB_XREF=EST238405 /CLONE=RKIEB47 /FEA=EST /CNT=25 /TID=Rn.7112.1 /TIER=Stack /STK=13 /UG=Rn.7112 /UG_TITLE=ESTs, Highly similar to RAPA_HUMAN RAS-RELATED PROTEIN RAP-1A (R.norvegicus) AI410112 RAP1A, member of RAS oncogene family Rap1a 295347 NM_001005765 0006184 // GTP catabolic process // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0032045 // guanyl-nucleotide exchange factor complex // inferred from electronic annotation /// 0032045 // guanyl-nucleotide exchange factor complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0017016 // Ras GTPase binding // inferred from electronic annotation /// 0017016 // Ras GTPase binding // not recorded 1388616_at AI233746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233746 /DB_XREF=gi:4135910 /DB_XREF=EST230434 /CLONE=RKIDJ56 /FEA=EST /CNT=20 /TID=Rn.3457.1 /TIER=Stack /STK=13 /UG=Rn.3457 /UG_TITLE=ESTs, Weakly similar to SC14_HUMAN SEC14-LIKE PROTEIN (H.sapiens) AI233746 similar to RIKEN cDNA 2310042G06 MGC72955 494346 NM_001009543 1388617_at AW914746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW914746 /DB_XREF=gi:8080425 /DB_XREF=EST346050 /CLONE=RGIAT02 /FEA=EST /CNT=20 /TID=Rn.22050.1 /TIER=Stack /STK=13 /UG=Rn.22050 /UG_TITLE=ESTs, Moderately similar to A56716 aromatic ester hydrolase (H.sapiens) AW914746 biphenyl hydrolase-like (serine hydrolase) Bphl 361239 NM_001037206 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0016787 // hydrolase activity // inferred from electronic annotation 1388618_at BM389302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389302 /DB_XREF=gi:18189355 /DB_XREF=UI-R-DZ0-cko-h-22-0-UI.s1 /CLONE=UI-R-DZ0-cko-h-22-0-UI /FEA=EST /CNT=23 /TID=Rn.8963.1 /TIER=Stack /STK=13 /UG=Rn.8963 /UG_TITLE=ESTs, Weakly similar to LDVR RAT VERY LOW-DENSITY LIPOPROTEIN RECEPTOR PRECURSOR (R.norvegicus) BM389302 nidogen 2 Nid2 302248 NM_001012005 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0008218 // bioluminescence // inferred from electronic annotation /// 0018298 // protein-chromophore linkage // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388619_at AW535398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535398 /DB_XREF=gi:7177812 /DB_XREF=UI-R-BS0-aoe-g-01-0-UI.s1 /CLONE=UI-R-BS0-aoe-g-01-0-UI /FEA=EST /CNT=17 /TID=Rn.7684.1 /TIER=Stack /STK=13 /UG=Rn.7684 /UG_TITLE=ESTs AW535398 radixin Rdx 315655 NM_001005889 0030033 // microvillus assembly // not recorded /// 0045176 // apical protein localization // inferred from mutant phenotype /// 0045176 // apical protein localization // not recorded /// 0051016 // barbed-end actin filament capping // inferred from direct assay /// 0070848 // response to growth factor stimulus // inferred from expression pattern 0001726 // ruffle // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005902 // microvillus // inferred from direct assay /// 0005902 // microvillus // not recorded /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0019898 // extrinsic to membrane // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030175 // filopodium // not recorded /// 0030496 // midbody // inferred from direct assay /// 0032154 // cleavage furrow // inferred from direct assay /// 0032420 // stereocilium // not recorded /// 0045177 // apical part of cell // not recorded 0003779 // actin binding // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 1388620_at AA818192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818192 /DB_XREF=gi:4198705 /DB_XREF=UI-R-A0-ai-g-04-0-UI.s1 /CLONE=UI-R-A0-ai-g-04-0-UI /FEA=EST /CNT=17 /TID=Rn.1326.1 /TIER=Stack /STK=13 /UG=Rn.1326 /UG_TITLE=ESTs, Highly similar to ADA3-like protein (H.sapiens) AA818192 transcriptional adaptor 3 (NGG1 homolog, yeast)-like Tada3l 362414 NM_001025734 0006350 // transcription // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0043966 // histone H3 acetylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0030914 // STAGA complex // not recorded /// 0033276 // transcription factor TFTC complex // not recorded 0003713 // transcription coactivator activity // not recorded /// 0004402 // histone acetyltransferase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016922 // ligand-dependent nuclear receptor binding // not recorded /// 0019904 // protein domain specific binding // not recorded /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded 1388621_at BG378803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378803 /DB_XREF=gi:13303275 /DB_XREF=UI-R-CV1-bvt-a-06-0-UI.s1 /CLONE=UI-R-CV1-bvt-a-06-0-UI /FEA=EST /CNT=16 /TID=Rn.19345.1 /TIER=Stack /STK=13 /UG=Rn.19345 /UG_TITLE=ESTs BG378803 mediator complex subunit 11 Med11 287456 NM_001105799 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0016592 // mediator complex // inferred from electronic annotation /// 0016592 // mediator complex // not recorded 0005515 // protein binding // not recorded /// 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation 1388622_at AW535890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535890 /DB_XREF=gi:7178304 /DB_XREF=UI-R-BS0-aoc-e-06-0-UI.s1 /CLONE=UI-R-BS0-aoc-e-06-0-UI /FEA=EST /CNT=16 /TID=Rn.15312.1 /TIER=Stack /STK=13 /UG=Rn.15312 /UG_TITLE=ESTs, Weakly similar to NFH MOUSE NEUROFILAMENT TRIPLET H PROTEIN (M.musculus) AW535890 NOP56 ribonucleoprotein homolog (yeast) Nop56 362214 NM_001025732 0005732 // small nucleolar ribonucleoprotein complex // not recorded /// 0070761 // pre-snoRNP complex // not recorded 0005515 // protein binding // not recorded /// 0030515 // snoRNA binding // not recorded 1388623_at BI277003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277003 /DB_XREF=gi:14922460 /DB_XREF=UI-R-CY0-bxp-a-10-0-UI.s1 /CLONE=UI-R-CY0-bxp-a-10-0-UI /FEA=EST /CNT=16 /TID=Rn.8141.1 /TIER=Stack /STK=13 /UG=Rn.8141 /UG_TITLE=ESTs BI277003 EH-domain containing 1 Ehd1 293692 NM_001011939 0006897 // endocytosis // inferred from electronic annotation /// 0006897 // endocytosis // not recorded /// 0010886 // positive regulation of cholesterol storage // inferred from electronic annotation /// 0016197 // endosome transport // inferred from electronic annotation /// 0016197 // endosome transport // not recorded /// 0034383 // low-density lipoprotein particle clearance // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // inferred from electronic annotation 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from electronic annotation /// 0005811 // lipid particle // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0030139 // endocytic vesicle // not recorded /// 0031095 // platelet dense tubular network membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0055038 // recycling endosome membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1388624_at BG669070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669070 /DB_XREF=gi:13890992 /DB_XREF=DRN05B11 /CLONE=DRN05B11 /FEA=EST /CNT=16 /TID=Rn.2148.1 /TIER=Stack /STK=13 /UG=Rn.2148 /UG_TITLE=ESTs, Highly similar to EST00098 protein (H.sapiens) BG669070 similar to Hypothetical UPF0184 protein C9orf16 homolog RGD1561113 499780 XM_575113 1388625_at BM390149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390149 /DB_XREF=gi:18190202 /DB_XREF=UI-R-CN1-cjp-j-20-0-UI.s1 /CLONE=UI-R-CN1-cjp-j-20-0-UI /FEA=EST /CNT=16 /TID=Rn.2385.1 /TIER=Stack /STK=13 /UG=Rn.2385 /UG_TITLE=ESTs BM390149 integrator complex subunit 10 Ints10 290679 NM_001134416 0016180 // snRNA processing // inferred from electronic annotation /// 0016180 // snRNA processing // not recorded 0032039 // integrator complex // inferred from electronic annotation /// 0032039 // integrator complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388626_at AI638949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI638949 /DB_XREF=gi:4699983 /DB_XREF=rx02669s /CLONE=rx02669 /FEA=EST /CNT=16 /TID=Rn.20378.1 /TIER=Stack /STK=13 /UG=Rn.20378 /UG_TITLE=ESTs, Weakly similar to S44893 ZK1236.7 protein - Caenorhabditis elegans (C.elegans) AI638949 DDRGK domain containing 1 Ddrgk1 296162 NM_001106512 0005783 // endoplasmic reticulum // not recorded 0005515 // protein binding // not recorded 1388627_at AI179261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179261 /DB_XREF=gi:3729899 /DB_XREF=EST222953 /CLONE=RSPCE43 /FEA=EST /CNT=16 /TID=Rn.24949.1 /TIER=Stack /STK=13 /UG=Rn.24949 /UG_TITLE=ESTs, Moderately similar to JC7183 cathepsin Q (EC 3.4.22.-) precursor (accepted) - rat (R.norvegicus) AI179261 cathepsin Q /// similar to cathepsin M Ctsq /// RGD1564827 246147 /// 498689 NM_139262 /// XM_573974 0006508 // proteolysis // inferred from electronic annotation 0005764 // lysosome // non-traceable author statement 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation 1388628_at BI284430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284430 /DB_XREF=gi:14937103 /DB_XREF=UI-R-CX0s-ccr-a-06-0-UI.s1 /CLONE=UI-R-CX0s-ccr-a-06-0-UI /FEA=EST /CNT=21 /TID=Rn.1232.1 /TIER=Stack /STK=13 /UG=Rn.1232 /UG_TITLE=ESTs, Weakly similar to PRSC MOUSE 26S PROTEASOME REGULATORY SUBUNIT S12 (M.musculus) BI284430 transmembrane emp24 protein transport domain containing 3 Tmed3 300888 NM_001004249 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0033116 // ER-Golgi intermediate compartment membrane // inferred from electronic annotation 1388629_at BF281278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281278 /DB_XREF=gi:11212264 /DB_XREF=EST445785 /CLONE=RGIAB24 /FEA=EST /CNT=17 /TID=Rn.8093.1 /TIER=Stack /STK=13 /UG=Rn.8093 /UG_TITLE=ESTs, Weakly similar to guanosine monophosphate reductase (Rattus norvegicus) (R.norvegicus) BF281278 IMP (inosine monophosphate) dehydrogenase 2 Impdh2 301005 NM_199099 0006164 // purine nucleotide biosynthetic process // inferred from electronic annotation /// 0006164 // purine nucleotide biosynthetic process // not recorded /// 0006177 // GMP biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // not recorded /// 0046651 // lymphocyte proliferation // inferred from electronic annotation /// 0046651 // lymphocyte proliferation // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0003938 // IMP dehydrogenase activity // inferred from electronic annotation /// 0003938 // IMP dehydrogenase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388630_at BI296506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296506 /DB_XREF=gi:14960996 /DB_XREF=UI-R-CV2-cgs-a-09-0-UI.s1 /CLONE=UI-R-CV2-cgs-a-09-0-UI /FEA=EST /CNT=16 /TID=Rn.31250.1 /TIER=Stack /STK=13 /UG=Rn.31250 /UG_TITLE=ESTs BI296506 1388631_at AI177093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177093 /DB_XREF=gi:4134953 /DB_XREF=EST220700 /CLONE=ROVCA67 /FEA=EST /CNT=16 /TID=Rn.8258.1 /TIER=Stack /STK=13 /UG=Rn.8258 /UG_TITLE=ESTs AI177093 5-azacytidine induced 2 Azi2 316051 NM_001025705 0007249 // I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1388632_at BG665929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665929 /DB_XREF=gi:13887851 /DB_XREF=DRACKE03 /CLONE=DRACKE03 /FEA=EST /CNT=15 /TID=Rn.13756.1 /TIER=Stack /STK=13 /UG=Rn.13756 /UG_TITLE=ESTs BG665929 RAB6B, member RAS oncogene family Rab6b 363123 NM_001108775 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1388633_at BM388921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388921 /DB_XREF=gi:18188979 /DB_XREF=UI-R-DZ0-ckn-j-13-0-UI.s1 /CLONE=UI-R-DZ0-ckn-j-13-0-UI /FEA=EST /CNT=15 /TID=Rn.8265.1 /TIER=Stack /STK=13 /UG=Rn.8265 /UG_TITLE=ESTs BM388921 similar to RIKEN cDNA 4930538D17 RGD1309313 309454 NM_001014030 1388634_at BI277505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277505 /DB_XREF=gi:14923444 /DB_XREF=UI-R-CY0-bxs-a-02-0-UI.s1 /CLONE=UI-R-CY0-bxs-a-02-0-UI /FEA=EST /CNT=15 /TID=Rn.3760.1 /TIER=Stack /STK=13 /UG=Rn.3760 /UG_TITLE=ESTs, Highly similar to PHOSPHOGLUCOMUTASE (R.norvegicus) BI277505 phosphoglucomutase 1 Pgm1 24645 NM_017033 0005975 // carbohydrate metabolic process // traceable author statement /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006874 // cellular calcium ion homeostasis // traceable author statement /// 0009314 // response to radiation // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004614 // phosphoglucomutase activity // inferred from electronic annotation /// 0004614 // phosphoglucomutase activity // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation /// 0016868 // intramolecular transferase activity, phosphotransferases // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388635_at BE113372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113372 /DB_XREF=gi:8505477 /DB_XREF=UI-R-BJ1-awe-e-11-0-UI.s1 /CLONE=UI-R-BJ1-awe-e-11-0-UI /FEA=EST /CNT=15 /TID=Rn.20506.1 /TIER=Stack /STK=13 /UG=Rn.20506 /UG_TITLE=ESTs BE113372 transmembrane protein 127 Tmem127 311405 NM_001100978 0016021 // integral to membrane // inferred from electronic annotation 1388636_at BI280272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280272 /DB_XREF=gi:14928890 /DB_XREF=UI-R-DE0-cag-a-05-0-UI.s1 /CLONE=UI-R-DE0-cag-a-05-0-UI /FEA=EST /CNT=15 /TID=Rn.26488.1 /TIER=Stack /STK=13 /UG=Rn.26488 /UG_TITLE=ESTs, Weakly similar to JC5393 zinc finger protein KF-1 precursor - mouse (M.musculus) BI280272 ring finger protein 167 Rnf167 360554 NM_001008361 0000209 // protein polyubiquitination // inferred from electronic annotation /// 0000209 // protein polyubiquitination // not recorded /// 0045786 // negative regulation of cell cycle // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388637_at AI579376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI579376 /DB_XREF=gi:4563752 /DB_XREF=UI-R-Y0-vo-e-06-0-UI.s2 /CLONE=UI-R-Y0-vo-e-06-0-UI /FEA=EST /CNT=15 /TID=Rn.34623.1 /TIER=Stack /STK=13 /UG=Rn.34623 /UG_TITLE=ESTs AI579376 similar to RIKEN cDNA 4632411B12 RGD1309220 316328 NM_001034835 0003824 // catalytic activity // inferred from electronic annotation 1388638_at AW525725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525725 /DB_XREF=gi:7168110 /DB_XREF=UI-R-BJ0p-air-b-05-0-UI.s1 /CLONE=UI-R-BJ0p-air-b-05-0-UI /FEA=EST /CNT=15 /TID=Rn.8108.1 /TIER=Stack /STK=13 /UG=Rn.8108 /UG_TITLE=ESTs, Weakly similar to T46324 hypothetical protein DKFZp434O0712.1 (H.sapiens) AW525725 sirtuin (silent mating type information regulation 2 homolog) 6 (S. cerevisiae) Sirt6 299638 NM_001031649 0006342 // chromatin silencing // inferred from electronic annotation /// 0006471 // protein ADP-ribosylation // inferred from electronic annotation /// 0006471 // protein ADP-ribosylation // not recorded /// 0006476 // protein deacetylation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005724 // nuclear telomeric heterochromatin // inferred from electronic annotation /// 0005724 // nuclear telomeric heterochromatin // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0003956 // NAD(P)+-protein-arginine ADP-ribosyltransferase activity // inferred from electronic annotation /// 0003956 // NAD(P)+-protein-arginine ADP-ribosyltransferase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016811 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides // inferred from electronic annotation /// 0046969 // NAD-dependent histone deacetylase activity (H3-K9 specific) // inferred from electronic annotation /// 0046969 // NAD-dependent histone deacetylase activity (H3-K9 specific) // not recorded /// 0070403 // NAD binding // inferred from electronic annotation 1388639_at BF284148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284148 /DB_XREF=gi:11215218 /DB_XREF=EST448739 /CLONE=RGIEL56 /FEA=EST /CNT=15 /TID=Rn.7641.1 /TIER=Stack /STK=13 /UG=Rn.7641 /UG_TITLE=ESTs BF284148 breast carcinoma amplified sequence 3 Bcas3 363662 NM_001173430 /// XM_001081081 /// XM_343952 1388640_at BI279654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279654 /DB_XREF=gi:14927676 /DB_XREF=UI-R-DE0-caf-b-01-0-UI.s1 /CLONE=UI-R-DE0-caf-b-01-0-UI /FEA=EST /CNT=19 /TID=Rn.23194.1 /TIER=Stack /STK=13 /UG=Rn.23194 /UG_TITLE=ESTs, Moderately similar to JC4760 SMT3 protein (H.sapiens) BI279654 SMT3 suppressor of mif two 3 homolog 3 (S. cerevisiae) Sumo3 499417 NM_001024295 0016925 // protein sumoylation // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0019789 // SUMO ligase activity // inferred from electronic annotation /// 0019789 // SUMO ligase activity // not recorded 1388641_at AI410319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410319 /DB_XREF=gi:4253823 /DB_XREF=EST238612 /CLONE=RKIDM13 /FEA=EST /CNT=17 /TID=Rn.8107.1 /TIER=Stack /STK=13 /UG=Rn.8107 /UG_TITLE=ESTs, Moderately similar to I67805 purine synthesis multifunctional protein - mouse (M.musculus) AI410319 phosphoribosylglycinamide formyltransferase Gart 288259 NM_001011899 0006164 // purine nucleotide biosynthetic process // inferred from electronic annotation /// 0009113 // purine base biosynthetic process // inferred from electronic annotation /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // not recorded /// 0010033 // response to organic substance // inferred from direct assay /// 0010035 // response to inorganic substance // inferred from direct assay /// 0048513 // organ development // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004637 // phosphoribosylamine-glycine ligase activity // inferred from electronic annotation /// 0004644 // phosphoribosylglycinamide formyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1388642_at AI412114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412114 /DB_XREF=gi:4255618 /DB_XREF=EST240408 /CLONE=RKIEG25 /FEA=EST /CNT=17 /TID=Rn.6593.1 /TIER=Stack /STK=13 /UG=Rn.6593 /UG_TITLE=ESTs AI412114 etoposide induced 2.4 mRNA Ei24 300514 NM_001025660 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1388643_at AI177839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177839 /DB_XREF=gi:3728477 /DB_XREF=EST221486 /CLONE=RPLCH21 /FEA=EST /CNT=16 /TID=Rn.1717.1 /TIER=Stack /STK=13 /UG=Rn.1717 /UG_TITLE=ESTs, Highly similar to N-Acetyl-beta-D-glucosaminide (H.sapiens) AI177839 fucosyltransferase 8 (alpha (1,6) fucosyltransferase) Fut8 432392 NM_001002289 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // not recorded /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0033578 // protein glycosylation in Golgi // inferred from electronic annotation /// 0043112 // receptor metabolic process // inferred from electronic annotation /// 0043112 // receptor metabolic process // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0008424 // glycoprotein 6-alpha-L-fucosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0046921 // alpha(1,6)-fucosyltransferase activity // not recorded /// 0046921 // alpha(1,6)-fucosyltransferase activity // inferred from electronic annotation 1388644_at AI713204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI713204 /DB_XREF=gi:5017004 /DB_XREF=UI-R-Y0-aaz-d-10-0-UI.s1 /CLONE=UI-R-Y0-aaz-d-10-0-UI /FEA=EST /CNT=15 /TID=Rn.40396.1 /TIER=Stack /STK=13 /UG=Rn.40396 /UG_TITLE=ESTs AI713204 Monoglyceride lipase Mgll 29254 NM_138502 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0019369 // arachidonic acid metabolic process // inferred from sequence or structural similarity /// 0035466 // regulation of signaling pathway // inferred from sequence or structural similarity /// 0046464 // acylglycerol catabolic process // inferred from sequence or structural similarity /// 0050727 // regulation of inflammatory response // inferred from sequence or structural similarity /// 0051930 // regulation of sensory perception of pain // inferred from sequence or structural similarity 0045202 // synapse // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0008289 // lipid binding // inferred from mutant phenotype /// 0016787 // hydrolase activity // inferred from direct assay /// 0016787 // hydrolase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0047372 // acylglycerol lipase activity // inferred from sequence or structural similarity /// 0047372 // acylglycerol lipase activity // inferred from electronic annotation 1388645_at AI175494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175494 /DB_XREF=gi:3726132 /DB_XREF=EST219046 /CLONE=RMUCO19 /FEA=EST /CNT=15 /TID=Rn.5874.1 /TIER=Stack /STK=13 /UG=Rn.5874 /UG_TITLE=ESTs, Highly similar to T46901 hypothetical protein DKFZp761C10121.1 (H.sapiens) AI175494 Obg-like ATPase 1 Ola1 296488 NM_001033927 0006200 // ATP catabolic process // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1388646_at BM391469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391469 /DB_XREF=gi:18191522 /DB_XREF=UI-R-DY0-ckr-m-11-0-UI.s1 /CLONE=UI-R-DY0-ckr-m-11-0-UI /FEA=EST /CNT=15 /TID=Rn.18832.1 /TIER=Stack /STK=13 /UG=Rn.18832 /UG_TITLE=ESTs BM391469 regulatory associated protein of MTOR, complex 1 Rptor 287871 NM_001134499 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0008361 // regulation of cell size // not recorded /// 0031669 // cellular response to nutrient levels // not recorded /// 0032008 // positive regulation of TOR signaling cascade // not recorded /// 0042325 // regulation of phosphorylation // inferred from mutant phenotype 0005829 // cytosol // not recorded /// 0030425 // dendrite // inferred from direct assay /// 0031931 // TORC1 complex // inferred from mutant phenotype /// 0031931 // TORC1 complex // not recorded /// 0043025 // neuronal cell body // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0032403 // protein complex binding // not recorded 1388647_at AI233753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233753 /DB_XREF=gi:3817633 /DB_XREF=EST230441 /CLONE=RKIDJ65 /FEA=EST /CNT=15 /TID=Rn.7954.1 /TIER=Stack /STK=13 /UG=Rn.7954 /UG_TITLE=ESTs AI233753 similar to coiled-coil-helix-coiled-coil-helix domain containing 7 LOC684258 684258 XM_001069610 1388648_at AA799764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799764 /DB_XREF=gi:2862719 /DB_XREF=EST189261 /CLONE=RHEAF08 /FEA=EST /CNT=14 /TID=Rn.6231.1 /TIER=Stack /STK=13 /UG=Rn.6231 /UG_TITLE=ESTs AA799764 1388649_at BI291470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291470 /DB_XREF=gi:14951043 /DB_XREF=UI-R-CV2-cgq-f-10-0-UI.s1 /CLONE=UI-R-CV2-cgq-f-10-0-UI /FEA=EST /CNT=14 /TID=Rn.46413.1 /TIER=Stack /STK=13 /UG=Rn.46413 /UG_TITLE=ESTs BI291470 trafficking protein particle complex 10 Trappc10 309678 NM_001173528 /// XM_001079323 /// XM_228065 0005488 // binding // inferred from electronic annotation 1388650_at BM385445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385445 /DB_XREF=gi:18185504 /DB_XREF=UI-R-CN1-clv-l-22-0-UI.s1 /CLONE=UI-R-CN1-clv-l-22-0-UI /FEA=EST /CNT=14 /TID=Rn.55119.2 /TIER=Stack /STK=13 /UG=Rn.55119 /LL=29390 /UG_GENE=Top2a /UG_TITLE=topoisomerase (DNA) II alpha BM385445 topoisomerase (DNA) II alpha Top2a 360243 NM_022183 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006265 // DNA topological change // inferred from direct assay /// 0006265 // DNA topological change // inferred from electronic annotation /// 0006265 // DNA topological change // not recorded /// 0006266 // DNA ligation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007059 // chromosome segregation // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0021702 // cerebellar Purkinje cell differentiation // inferred from expression pattern /// 0021707 // cerebellar granule cell differentiation // inferred from expression pattern /// 0030261 // chromosome condensation // inferred from electronic annotation /// 0030261 // chromosome condensation // not recorded /// 0030263 // apoptotic chromosome condensation // not recorded /// 0040016 // embryonic cleavage // inferred from electronic annotation /// 0040016 // embryonic cleavage // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // not recorded /// 0045070 // positive regulation of viral genome replication // not recorded /// 0045870 // positive regulation of retroviral genome replication // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0071107 // response to parathyroid hormone stimulus // inferred from expression pattern 0000228 // nuclear chromosome // not recorded /// 0000793 // condensed chromosome // inferred from electronic annotation /// 0000793 // condensed chromosome // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005694 // chromosome // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005814 // centriole // not recorded /// 0009330 // DNA topoisomerase complex (ATP-hydrolyzing) // inferred from direct assay /// 0009330 // DNA topoisomerase complex (ATP-hydrolyzing) // not recorded /// 0043234 // protein complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // traceable author statement /// 0003682 // chromatin binding // inferred from direct assay /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003916 // DNA topoisomerase activity // inferred from direct assay /// 0003916 // DNA topoisomerase activity // inferred from electronic annotation /// 0003918 // DNA topoisomerase (ATP-hydrolyzing) activity // inferred from direct assay /// 0003918 // DNA topoisomerase (ATP-hydrolyzing) activity // inferred from electronic annotation /// 0003918 // DNA topoisomerase (ATP-hydrolyzing) activity // not recorded /// 0005080 // protein kinase C binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // traceable author statement /// 0008022 // protein C-terminus binding // not recorded /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0008144 // drug binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0042826 // histone deacetylase binding // not recorded /// 0043130 // ubiquitin binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043566 // structure-specific DNA binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // not recorded 1388651_at AA800053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800053 /DB_XREF=gi:2863008 /DB_XREF=EST189550 /CLONE=RHEAI85 /FEA=EST /CNT=14 /TID=Rn.2007.1 /TIER=Stack /STK=13 /UG=Rn.2007 /UG_TITLE=ESTs, Highly similar to T08775 hypothetical protein DKFZp586C1620.1 (H.sapiens) AA800053 ring finger and CHY zinc finger domain containing 1 Rchy1 289508 NM_001007618 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0051865 // protein autoubiquitination // inferred from electronic annotation /// 0051865 // protein autoubiquitination // not recorded 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0000151 // ubiquitin ligase complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0002039 // p53 binding // inferred from electronic annotation /// 0002039 // p53 binding // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1388652_at BG380697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380697 /DB_XREF=gi:13305169 /DB_XREF=UI-R-CT0-bua-d-06-0-UI.s1 /CLONE=UI-R-CT0-bua-d-06-0-UI /FEA=EST /CNT=14 /TID=Rn.14976.1 /TIER=Stack /STK=13 /UG=Rn.14976 /UG_TITLE=ESTs BG380697 1388653_at AA849552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849552 /DB_XREF=gi:4131743 /DB_XREF=EST192319 /CLONE=RMUAG21 /FEA=EST /CNT=14 /TID=Rn.6486.1 /TIER=Stack /STK=13 /UG=Rn.6486 /UG_TITLE=ESTs, Highly similar to I61714 co-repressor protein - mouse (M.musculus) AA849552 SIN3 homolog B, transcription regulator (yeast) Sin3b 683381 NM_001115038 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1388654_at AI409180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409180 /DB_XREF=gi:4252684 /DB_XREF=EST237472 /CLONE=RKIDO09 /FEA=EST /CNT=14 /TID=Rn.6660.1 /TIER=Stack /STK=13 /UG=Rn.6660 /UG_TITLE=ESTs AI409180 mitochondrial ribosomal protein L52 Mrpl52 361037 NM_001108375 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation 1388655_at AW252465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252465 /DB_XREF=gi:6596056 /DB_XREF=UI-R-BJ0-adx-h-03-0-UI.s1 /CLONE=UI-R-BJ0-adx-h-03-0-UI /FEA=EST /CNT=14 /TID=Rn.15081.1 /TIER=Stack /STK=13 /UG=Rn.15081 /UG_TITLE=ESTs AW252465 Sjogren syndrome nuclear autoantigen 1 Ssna1 311802 NM_001107820 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1388656_at BI294968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294968 /DB_XREF=gi:14957942 /DB_XREF=UI-R-DK0-cee-c-04-0-UI.s1 /CLONE=UI-R-DK0-cee-c-04-0-UI /FEA=EST /CNT=14 /TID=Rn.7390.3 /TIER=Stack /STK=13 /UG=Rn.7390 /UG_TITLE=Rattus norvegicus clone ubc2e ubiquitin conjugating enzyme (E217kB) mRNA, complete cds BI294968 1388657_at AW253923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253923 /DB_XREF=gi:6597514 /DB_XREF=UI-R-BJ0-aed-a-02-0-UI.s1 /CLONE=UI-R-BJ0-aed-a-02-0-UI /FEA=EST /CNT=14 /TID=Rn.15768.1 /TIER=Stack /STK=13 /UG=Rn.15768 /UG_TITLE=ESTs AW253923 dachsous 1 (Drosophila) Dchs1 308912 NM_001107544 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1388658_at AA942704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA942704 /DB_XREF=gi:3102620 /DB_XREF=EST198203 /CLONE=RBRAA33 /FEA=EST /CNT=14 /TID=Rn.33769.2 /TIER=Stack /STK=13 /UG=Rn.33769 /UG_TITLE=ESTs, Moderately similar to SUR2 MOUSE SURFEIT LOCUS PROTEIN 2 (M.musculus) AA942704 surfeit 2 Surf2 619345 NM_001033866 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388659_at BI295783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295783 /DB_XREF=gi:14959576 /DB_XREF=UI-R-DK0-cfa-f-02-0-UI.s1 /CLONE=UI-R-DK0-cfa-f-02-0-UI /FEA=EST /CNT=14 /TID=Rn.14584.1 /TIER=Stack /STK=13 /UG=Rn.14584 /UG_TITLE=ESTs BI295783 calcium regulated heat stable protein 1 Carhsp1 260416 NM_152790 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // non-traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement 1388660_at BI295915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295915 /DB_XREF=gi:14959838 /DB_XREF=UI-R-DK0-cfc-c-04-0-UI.s1 /CLONE=UI-R-DK0-cfc-c-04-0-UI /FEA=EST /CNT=14 /TID=Rn.36129.1 /TIER=Stack /STK=13 /UG=Rn.36129 /UG_TITLE=ESTs, Weakly similar to C11D2.4.p (Caenorhabditis elegans) (C.elegans) BI295915 malignant T cell amplified sequence 1 Mcts1 302500 NM_001044237 0006350 // transcription // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0040008 // regulation of growth // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation 1388661_at AA943734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943734 /DB_XREF=gi:3103650 /DB_XREF=EST199233 /CLONE=RBRAP03 /FEA=EST /CNT=17 /TID=Rn.7443.1 /TIER=Stack /STK=13 /UG=Rn.7443 /UG_TITLE=ESTs, Weakly similar to T13C5.6.p (Caenorhabditis elegans) (C.elegans) AA943734 mitochondrial protein 18 kDa Mtp18 289745 NM_001006960 0015976 // carbon utilization // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0004089 // carbonate dehydratase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1388662_at BF392884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392884 /DB_XREF=gi:11377743 /DB_XREF=UI-R-CA0-bfq-d-05-0-UI.s1 /CLONE=UI-R-CA0-bfq-d-05-0-UI /FEA=EST /CNT=15 /TID=Rn.17619.1 /TIER=Stack /STK=13 /UG=Rn.17619 /UG_TITLE=ESTs BF392884 1388663_at AI100783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI100783 /DB_XREF=gi:3704517 /DB_XREF=EST210072 /CLONE=RBRBA24 /FEA=EST /CNT=15 /TID=Rn.4184.1 /TIER=Stack /STK=13 /UG=Rn.4184 /UG_TITLE=ESTs AI100783 similar to death effector domain-containing DNA binding protein 2 LOC687118 687118 XM_001077155 0042981 // regulation of apoptosis // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1388664_at BI282719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282719 /DB_XREF=gi:14933766 /DB_XREF=UI-R-CW0s-cce-d-06-0-UI.s1 /CLONE=UI-R-CW0s-cce-d-06-0-UI /FEA=EST /CNT=14 /TID=Rn.34496.1 /TIER=Stack /STK=13 /UG=Rn.34496 /UG_TITLE=ESTs BI282719 scribbled homolog (Drosophila) Scrib 362938 NM_001191879 /// XM_001074724 /// XM_002726940 /// XM_002726941 /// XM_002726942 /// XM_002726943 /// XM_002729823 /// XM_002729824 /// XM_002729825 /// XM_002729826 /// XM_343266 0001921 // positive regulation of receptor recycling // not recorded /// 0008105 // asymmetric protein localization // not recorded /// 0008283 // cell proliferation // not recorded /// 0016080 // synaptic vesicle targeting // not recorded /// 0016331 // morphogenesis of embryonic epithelium // not recorded /// 0016337 // cell-cell adhesion // not recorded /// 0016477 // cell migration // not recorded /// 0032863 // activation of Rac GTPase activity // not recorded /// 0035089 // establishment of apical/basal cell polarity // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043615 // astrocyte cell migration // inferred from mutant phenotype /// 0045930 // negative regulation of mitotic cell cycle // not recorded /// 0048488 // synaptic vesicle endocytosis // not recorded /// 0050918 // positive chemotaxis // not recorded /// 0060561 // apoptosis involved in morphogenesis // not recorded /// 0060603 // mammary gland duct morphogenesis // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // inferred from direct assay /// 0005911 // cell-cell junction // not recorded /// 0005913 // cell-cell adherens junction // not recorded /// 0016323 // basolateral plasma membrane // not recorded /// 0031252 // cell leading edge // not recorded /// 0042734 // presynaptic membrane // not recorded /// 0045211 // postsynaptic membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1388665_at BM390489 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390489 /DB_XREF=gi:18190542 /DB_XREF=UI-R-CN1-cjq-l-12-0-UI.s1 /CLONE=UI-R-CN1-cjq-l-12-0-UI /FEA=EST /CNT=14 /TID=Rn.7220.1 /TIER=Stack /STK=13 /UG=Rn.7220 /UG_TITLE=ESTs BM390489 similar to RIKEN cDNA 1110020A23 RGD1308134 287452 NM_001127521 0003677 // DNA binding // inferred from electronic annotation 1388666_at AI179988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179988 /DB_XREF=gi:3730626 /DB_XREF=EST223719 /CLONE=RSPCO55 /FEA=EST /CNT=14 /TID=Rn.3039.1 /TIER=Stack /STK=13 /UG=Rn.3039 /UG_TITLE=ESTs AI179988 ectodermal-neural cortex 1 Enc1 294674 NM_001003401 0005515 // protein binding // inferred from electronic annotation 1388667_at AI178793 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178793 /DB_XREF=gi:3729431 /DB_XREF=EST222475 /CLONE=RSPBM66 /FEA=EST /CNT=13 /TID=Rn.17190.1 /TIER=Stack /STK=13 /UG=Rn.17190 /UG_TITLE=ESTs, Highly similar to MAN2 RAT ALPHA-MANNOSIDASE II (R.norvegicus) AI178793 mannosidase, alpha, class 2A, member 1 Man2a1 25478 NM_012979 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006013 // mannose metabolic process // inferred from electronic annotation /// 0006491 // N-glycan processing // inferred from electronic annotation /// 0006491 // N-glycan processing // not recorded /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0007033 // vacuole organization // inferred from electronic annotation /// 0007033 // vacuole organization // not recorded /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // not recorded /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048286 // lung alveolus development // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0000139 // Golgi membrane // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004559 // alpha-mannosidase activity // inferred from electronic annotation /// 0004572 // mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0015923 // mannosidase activity // not recorded /// 0015923 // mannosidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0016799 // hydrolase activity, hydrolyzing N-glycosyl compounds // inferred from electronic annotation /// 0016799 // hydrolase activity, hydrolyzing N-glycosyl compounds // not recorded /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388668_at BM384972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384972 /DB_XREF=gi:18185025 /DB_XREF=UI-R-CN1-cjl-p-02-0-UI.s2 /CLONE=UI-R-CN1-cjl-p-02-0-UI /FEA=EST /CNT=13 /TID=Rn.878.1 /TIER=Stack /STK=13 /UG=Rn.878 /UG_TITLE=ESTs BM384972 1388669_at BM391739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391739 /DB_XREF=gi:18191792 /DB_XREF=UI-R-DZ0-cks-e-22-0-UI.s1 /CLONE=UI-R-DZ0-cks-e-22-0-UI /FEA=EST /CNT=13 /TID=Rn.16732.1 /TIER=Stack /STK=13 /UG=Rn.16732 /UG_TITLE=ESTs, Highly similar to A55749 spliceosome-associated protein SAP 61 (H.sapiens) BM391739 splicing factor 3a, subunit 3 Sf3a3 313583 NM_001025698 0006397 // mRNA processing // not recorded /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1388670_at BI286860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286860 /DB_XREF=gi:14941913 /DB_XREF=UI-R-CT0s-cam-g-02-0-UI.s1 /CLONE=UI-R-CT0s-cam-g-02-0-UI /FEA=EST /CNT=13 /TID=Rn.1723.1 /TIER=Stack /STK=13 /UG=Rn.1723 /UG_TITLE=ESTs, Highly similar to KINESIN-LIKE PROTEIN KIF1A (M.musculus) BI286860 1388671_at BI298066 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298066 /DB_XREF=gi:14974346 /DB_XREF=UI-R-CV2-chf-a-03-0-UI.s1 /CLONE=UI-R-CV2-chf-a-03-0-UI /FEA=EST /CNT=13 /TID=Rn.66317.1 /TIER=Stack /STK=13 /UG=Rn.66317 /UG_TITLE=ESTs BI298066 1388672_at AI101373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101373 /DB_XREF=gi:3706283 /DB_XREF=EST210662 /CLONE=RBRBN52 /FEA=EST /CNT=13 /TID=Rn.9024.1 /TIER=Stack /STK=13 /UG=Rn.9024 /UG_TITLE=ESTs AI101373 zinc finger, CCHC domain containing 24 Zcchc24 361104 NM_001108394 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388673_at AI012109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012109 /DB_XREF=gi:3225941 /DB_XREF=EST206560 /CLONE=RPLAS87 /FEA=EST /CNT=13 /TID=Rn.9276.1 /TIER=Stack /STK=13 /UG=Rn.9276 /UG_TITLE=ESTs, Highly similar to LSP1 MOUSE LYMPHOCYTE-SPECIFIC PROTEINS LSP1 AND S37 (M.musculus) AI012109 lymphocyte-specific protein 1 Lsp1 361680 NM_001025420 0006935 // chemotaxis // inferred from electronic annotation /// 0006935 // chemotaxis // not recorded /// 0006952 // defense response // inferred from electronic annotation /// 0006952 // defense response // not recorded /// 0007165 // signal transduction // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation 1388674_at AI010427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010427 /DB_XREF=gi:4133251 /DB_XREF=EST204878 /CLONE=RLUBZ34 /FEA=EST /CNT=13 /TID=Rn.30756.1 /TIER=Stack /STK=13 /UG=Rn.30756 /UG_TITLE=ESTs AI010427 cyclin-dependent kinase inhibitor 1A Cdkn1a 114851 NM_080782 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0000086 // G2/M transition of mitotic cell cycle // inferred from electronic annotation /// 0000086 // G2/M transition of mitotic cell cycle // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // inferred from electronic annotation /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // not recorded /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0007265 // Ras protein signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009411 // response to UV // inferred from electronic annotation /// 0009411 // response to UV // not recorded /// 0009636 // response to toxin // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0031668 // cellular response to extracellular stimulus // not recorded /// 0042326 // negative regulation of phosphorylation // inferred from electronic annotation /// 0042326 // negative regulation of phosphorylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043068 // positive regulation of programmed cell death // inferred from electronic annotation /// 0043068 // positive regulation of programmed cell death // not recorded /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // not recorded /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0046685 // response to arsenic // inferred from expression pattern /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051412 // response to corticosterone stimulus // inferred from expression pattern /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded /// 0055093 // response to hyperoxia // inferred from expression pattern 0000307 // cyclin-dependent protein kinase holoenzyme complex // inferred from electronic annotation /// 0000307 // cyclin-dependent protein kinase holoenzyme complex // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0070557 // PCNA-p21 complex // not recorded 0004861 // cyclin-dependent protein kinase inhibitor activity // inferred from electronic annotation /// 0004861 // cyclin-dependent protein kinase inhibitor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0030332 // cyclin binding // inferred from electronic annotation /// 0030332 // cyclin binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction 1388675_at BE349771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE349771 /DB_XREF=gi:9261624 /DB_XREF=hq42h02.x1 /CLONE=IMAGE:3122067 /FEA=EST /CNT=13 /TID=Rn.19088.1 /TIER=Stack /STK=13 /UG=Rn.19088 /UG_TITLE=ESTs, Weakly similar to T19232 hypothetical protein C13C4.5 - Caenorhabditis elegans (C.elegans) BE349771 spinster homolog 1 (Drosophila) Spns1 361648 NM_001039208 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388676_at BI296648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296648 /DB_XREF=gi:14961282 /DB_XREF=UI-R-CV2-cgt-f-10-0-UI.s1 /CLONE=UI-R-CV2-cgt-f-10-0-UI /FEA=EST /CNT=13 /TID=Rn.76516.1 /TIER=Stack /STK=13 /UG=Rn.76516 /UG_TITLE=ESTs BI296648 1388677_at BI275991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275991 /DB_XREF=gi:14920451 /DB_XREF=UI-R-CX0-bxi-g-08-0-UI.s1 /CLONE=UI-R-CX0-bxi-g-08-0-UI /FEA=EST /CNT=26 /TID=Rn.3223.1 /TIER=Stack /STK=12 /UG=Rn.3223 /UG_TITLE=ESTs BI275991 ubiquitin-associated protein 1 Ubap1 362502 NM_001012190 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1388678_at AI176695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176695 /DB_XREF=gi:3727333 /DB_XREF=EST220288 /CLONE=ROVBV63 /FEA=EST /CNT=25 /TID=Rn.2368.1 /TIER=Stack /STK=12 /UG=Rn.2368 /UG_TITLE=ESTs AI176695 1388679_at AI412244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412244 /DB_XREF=gi:4255748 /DB_XREF=EST240539 /CLONE=RKIEK92 /FEA=EST /CNT=24 /TID=Rn.6099.1 /TIER=Stack /STK=12 /UG=Rn.6099 /UG_TITLE=ESTs AI412244 TBC1 domain family, member 14 Tbc1d14 360956 NM_001012152 /// NM_001034021 /// NM_001113365 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1388680_at BM385686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385686 /DB_XREF=gi:18185739 /DB_XREF=UI-R-CN1-clx-m-05-0-UI.s1 /CLONE=UI-R-CN1-clx-m-05-0-UI /FEA=EST /CNT=25 /TID=Rn.3281.1 /TIER=Stack /STK=12 /UG=Rn.3281 /UG_TITLE=ESTs, Weakly similar to C38H2.2.p (Caenorhabditis elegans) (C.elegans) BM385686 C1GALT1-specific chaperone 1 C1galt1c1 302499 NM_001030033 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1388681_at AI105294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105294 /DB_XREF=gi:3709410 /DB_XREF=EST214583 /CLONE=RKIBI45 /FEA=EST /CNT=27 /TID=Rn.36748.1 /TIER=Stack /STK=12 /UG=Rn.36748 /UG_TITLE=ESTs, Weakly similar to ARF6_HUMAN ADP-RIBOSYLATION FACTOR 6 (R.norvegicus) AI105294 SAR1 homolog B (S. cerevisiae) Sar1b 287276 NM_001009622 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388682_at AI598397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598397 /DB_XREF=gi:4607445 /DB_XREF=EST250100 /CLONE=REMDQ59 /FEA=EST /CNT=27 /TID=Rn.24497.1 /TIER=Stack /STK=12 /UG=Rn.24497 /UG_TITLE=ESTs, Highly similar to CNIH MOUSE CORNICHON HOMOLOG (M.musculus) AI598397 cornichon homolog (Drosophila) Cnih 289994 NM_001106029 0023034 // intracellular signaling pathway // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 1388683_at AI411174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411174 /DB_XREF=gi:4254678 /DB_XREF=EST239468 /CLONE=RKIEU62 /FEA=EST /CNT=19 /TID=Rn.2677.1 /TIER=Stack /STK=12 /UG=Rn.2677 /UG_TITLE=ESTs, Weakly similar to T26289 hypothetical protein W08E3.1 - Caenorhabditis elegans (C.elegans) AI411174 LSM domain containing 1 Lsmd1 287429 NM_001105794 1388684_at BI274480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274480 /DB_XREF=gi:14885431 /DB_XREF=UI-R-CW0-bwj-d-03-0-UI.s1 /CLONE=UI-R-CW0-bwj-d-03-0-UI /FEA=EST /CNT=19 /TID=Rn.7828.1 /TIER=Stack /STK=12 /UG=Rn.7828 /UG_TITLE=ESTs BI274480 formin binding protein 4 Fnbp4 311183 NM_001013159 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388685_at AI011749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011749 /DB_XREF=gi:3225581 /DB_XREF=EST206200 /CLONE=ROVAZ64 /FEA=EST /CNT=18 /TID=Rn.6726.1 /TIER=Stack /STK=12 /UG=Rn.6726 /UG_TITLE=ESTs AI011749 1388686_at AI170193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170193 /DB_XREF=gi:3710233 /DB_XREF=EST216117 /CLONE=RLUCE50 /FEA=EST /CNT=31 /TID=Rn.12942.1 /TIER=Stack /STK=12 /UG=Rn.12942 /UG_TITLE=ESTs AI170193 regulator of calcineurin 1 Rcan1 266766 NM_153724 0007165 // signal transduction // traceable author statement /// 0007519 // skeletal muscle tissue development // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0019722 // calcium-mediated signaling // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // inferred from mutant phenotype /// 0043666 // regulation of phosphoprotein phosphatase activity // not recorded /// 0048741 // skeletal muscle fiber development // not recorded /// 0051151 // negative regulation of smooth muscle cell differentiation // inferred from direct assay 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0030346 // protein phosphatase 2B binding // traceable author statement 1388687_at BI274588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274588 /DB_XREF=gi:14885633 /DB_XREF=UI-R-CW0-bwl-f-06-0-UI.s1 /CLONE=UI-R-CW0-bwl-f-06-0-UI /FEA=EST /CNT=18 /TID=Rn.24616.1 /TIER=Stack /STK=12 /UG=Rn.24616 /UG_TITLE=ESTs BI274588 dehydrodolichyl diphosphate synthase Dhdds 298541 NM_001011978 0005515 // protein binding // not recorded /// 0008834 // di-trans,poly-cis-decaprenylcistransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016765 // transferase activity, transferring alkyl or aryl (other than methyl) groups // inferred from electronic annotation 1388688_at BI296599 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296599 /DB_XREF=gi:14961184 /DB_XREF=UI-R-CV2-cgt-b-03-0-UI.s1 /CLONE=UI-R-CV2-cgt-b-03-0-UI /FEA=EST /CNT=18 /TID=Rn.8403.1 /TIER=Stack /STK=12 /UG=Rn.8403 /UG_TITLE=ESTs BI296599 1388689_at AI170755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170755 /DB_XREF=gi:3710795 /DB_XREF=EST216694 /CLONE=RMUBB07 /FEA=EST /CNT=17 /TID=Rn.22481.1 /TIER=Stack /STK=12 /UG=Rn.22481 /UG_TITLE=ESTs, Highly similar to ACYM RAT ACYLPHOSPHATASE, MUSCLE TYPE ISOZYME (R.norvegicus) AI170755 acylphosphatase 2, muscle type Acyp2 364224 NM_001169145 0003998 // acylphosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1388690_at AI105439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105439 /DB_XREF=gi:3709520 /DB_XREF=EST214728 /CLONE=RKIBK37 /FEA=EST /CNT=17 /TID=Rn.22514.2 /TIER=Stack /STK=12 /UG=Rn.22514 /LL=54311 /UG_GENE=Timm17a /UG_TITLE=translocator of inner mitochondrial membrane 17 kDa, a AI105439 breast cancer metastasis-suppressor 1-like Brms1l 299053 NM_001106731 1388691_at AI177410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177410 /DB_XREF=gi:3728048 /DB_XREF=EST221030 /CLONE=RPLBY81 /FEA=EST /CNT=21 /TID=Rn.17785.1 /TIER=Stack /STK=12 /UG=Rn.17785 /UG_TITLE=ESTs, Weakly similar to Ubiquitin family (Caenorhabditis elegans) (C.elegans) AI177410 ubiquilin 4 Ubqln4 310633 NM_001107688 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1388692_at AI411102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411102 /DB_XREF=gi:4254606 /DB_XREF=EST239396 /CLONE=RKIET18 /FEA=EST /CNT=20 /TID=Rn.3662.1 /TIER=Stack /STK=12 /UG=Rn.3662 /UG_TITLE=ESTs AI411102 alkB, alkylation repair homolog 7 (E. coli) Alkbh7 679944 NM_001109384 0005739 // mitochondrion // not recorded 0010302 // 2-oxoglutarate-dependent dioxygenase activity // not recorded 1388693_at BF418174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418174 /DB_XREF=gi:11406163 /DB_XREF=UI-R-CN0-blt-d-07-0-UI.s1 /CLONE=UI-R-CN0-blt-d-07-0-UI /FEA=EST /CNT=19 /TID=Rn.3565.1 /TIER=Stack /STK=12 /UG=Rn.3565 /UG_TITLE=ESTs, Weakly similar to T29896 hypothetical protein F38A5.2 - Caenorhabditis elegans (C.elegans) BF418174 TraB domain containing Trabd 300142 NM_001106788 1388694_at AI233121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233121 /DB_XREF=gi:3817001 /DB_XREF=EST229809 /CLONE=RKICL08 /FEA=EST /CNT=18 /TID=Rn.40217.1 /TIER=Stack /STK=12 /UG=Rn.40217 /UG_TITLE=ESTs, Moderately similar to MHC class I (M.musculus) AI233121 RT1 class I, locus T24, gene 3 RT1-T24-3 414788 NM_001166403 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 1388695_at BF285150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285150 /DB_XREF=gi:11216220 /DB_XREF=EST449741 /CLONE=RGIFB12 /FEA=EST /CNT=17 /TID=Rn.9214.1 /TIER=Stack /STK=12 /UG=Rn.9214 /UG_TITLE=ESTs, Highly similar to B46746 glycine hydroxymethyltransferase (H.sapiens) BF285150 serine hydroxymethyltransferase 2 (mitochondrial) Shmt2 299857 NM_001008322 0006544 // glycine metabolic process // inferred from direct assay /// 0006544 // glycine metabolic process // traceable author statement /// 0006544 // glycine metabolic process // inferred from electronic annotation /// 0006545 // glycine biosynthetic process // inferred from direct assay /// 0006563 // L-serine metabolic process // traceable author statement /// 0006563 // L-serine metabolic process // inferred from electronic annotation /// 0006564 // L-serine biosynthetic process // inferred from direct assay /// 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0006730 // one-carbon metabolic process // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0019264 // glycine biosynthetic process from serine // inferred from direct assay /// 0051289 // protein homotetramerization // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // inferred from direct assay /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // not recorded /// 0042645 // mitochondrial nucleoid // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004372 // glycine hydroxymethyltransferase activity // inferred from direct assay /// 0004372 // glycine hydroxymethyltransferase activity // not recorded /// 0004372 // glycine hydroxymethyltransferase activity // traceable author statement /// 0004372 // glycine hydroxymethyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008732 // L-allo-threonine aldolase activity // inferred from direct assay /// 0016597 // amino acid binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from direct assay /// 0030170 // pyridoxal phosphate binding // traceable author statement /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay 1388696_at BI291922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291922 /DB_XREF=gi:14951917 /DB_XREF=UI-R-DN0-ciu-m-21-0-UI.s1 /CLONE=UI-R-DN0-ciu-m-21-0-UI /FEA=EST /CNT=17 /TID=Rn.11946.1 /TIER=Stack /STK=12 /UG=Rn.11946 /UG_TITLE=ESTs BI291922 ubiquitin fusion degradation 1 like (yeast) Ufd1l 84478 NM_053418 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1388697_at BI279692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279692 /DB_XREF=gi:14927745 /DB_XREF=UI-R-DE0-caf-e-11-0-UI.s1 /CLONE=UI-R-DE0-caf-e-11-0-UI /FEA=EST /CNT=16 /TID=Rn.8618.1 /TIER=Stack /STK=12 /UG=Rn.8618 /UG_TITLE=ESTs BI279692 inositol polyphosphate-5-phosphatase A Inpp5a 365382 NM_001108923 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0042731 // PH domain binding // not recorded 1388698_at AI407838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407838 /DB_XREF=gi:4251342 /DB_XREF=EST236128 /CLONE=ROVEC30 /FEA=EST /CNT=16 /TID=Rn.15.1 /TIER=Stack /STK=12 /UG=Rn.15 /UG_TITLE=ESTs, Moderately similar to A57474 extracellular matrix protein 1 precursor - mouse (M.musculus) AI407838 extracellular matrix protein 1 Ecm1 116662 NM_053882 0001503 // ossification // inferred from electronic annotation /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0001938 // positive regulation of endothelial cell proliferation // inferred from sequence or structural similarity /// 0010466 // negative regulation of peptidase activity // not recorded /// 0010466 // negative regulation of peptidase activity // inferred from sequence or structural similarity /// 0030500 // regulation of bone mineralization // inferred from electronic annotation /// 0030502 // negative regulation of bone mineralization // not recorded /// 0030502 // negative regulation of bone mineralization // inferred from sequence or structural similarity /// 0031214 // biomineral tissue development // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0045766 // positive regulation of angiogenesis // not recorded /// 0045766 // positive regulation of angiogenesis // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0002020 // protease binding // not recorded /// 0004871 // signal transducer activity // not recorded /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0043236 // laminin binding // not recorded 1388699_at BE114558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114558 /DB_XREF=gi:8506703 /DB_XREF=UI-R-BJ1-awn-a-05-0-UI.s1 /CLONE=UI-R-BJ1-awn-a-05-0-UI /FEA=EST /CNT=16 /TID=Rn.1034.1 /TIER=Stack /STK=12 /UG=Rn.1034 /UG_TITLE=ESTs, Moderately similar to mannosidase 2, alpha B1; lysosomal alpha-mannosidase (Mus musculus) (M.musculus) BE114558 mannosidase, alpha, class 2B, member 1 Man2b1 361378 NM_199404 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006013 // mannose metabolic process // inferred from electronic annotation /// 0006013 // mannose metabolic process // not recorded /// 0006464 // protein modification process // inferred from electronic annotation /// 0006464 // protein modification process // not recorded /// 0007611 // learning or memory // inferred from electronic annotation /// 0007611 // learning or memory // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004559 // alpha-mannosidase activity // inferred from direct assay /// 0004559 // alpha-mannosidase activity // inferred from mutant phenotype /// 0004559 // alpha-mannosidase activity // not recorded /// 0004559 // alpha-mannosidase activity // inferred from electronic annotation /// 0005537 // mannose binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0015923 // mannosidase activity // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation 1388700_at AW253004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253004 /DB_XREF=gi:6596595 /DB_XREF=UI-R-BJ0-aeq-c-04-0-UI.s1 /CLONE=UI-R-BJ0-aeq-c-04-0-UI /FEA=EST /CNT=21 /TID=Rn.8161.1 /TIER=Stack /STK=12 /UG=Rn.8161 /UG_TITLE=ESTs AW253004 Forkhead box N3 Foxn3 314374 NM_001108047 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1388701_at AI555336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555336 /DB_XREF=gi:4487699 /DB_XREF=UI-R-C2p-qw-d-02-0-UI.s1 /CLONE=UI-R-C2p-qw-d-02-0-UI /FEA=EST /CNT=18 /TID=Rn.25100.1 /TIER=Stack /STK=12 /UG=Rn.25100 /UG_TITLE=ESTs AI555336 Myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 Mllt6 303504 XM_001081378 /// XM_239329 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1388702_at BI285078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285078 /DB_XREF=gi:14938364 /DB_XREF=UI-R-DB0-byv-h-10-0-UI.s1 /CLONE=UI-R-DB0-byv-h-10-0-UI /FEA=EST /CNT=17 /TID=Rn.20314.1 /TIER=Stack /STK=12 /UG=Rn.20314 /UG_TITLE=ESTs BI285078 1388703_at BF285026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285026 /DB_XREF=gi:11216096 /DB_XREF=EST449617 /CLONE=RGIEY74 /FEA=EST /CNT=16 /TID=Rn.17089.1 /TIER=Stack /STK=12 /UG=Rn.17089 /UG_TITLE=ESTs BF285026 endothelial cell adhesion molecule Esam 300519 NM_001004245 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // not recorded /// 0016337 // cell-cell adhesion // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0005923 // tight junction // inferred from electronic annotation /// 0005923 // tight junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 1388704_at AA892394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892394 /DB_XREF=gi:3019273 /DB_XREF=EST196197 /CLONE=RKIAP90 /FEA=EST /CNT=16 /TID=Rn.4183.2 /TIER=Stack /STK=12 /UG=Rn.4183 /UG_TITLE=ESTs, Weakly similar to HUD RAT PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD HOMOLOG (R.norvegicus) AA892394 1388705_at BI282694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282694 /DB_XREF=gi:14933720 /DB_XREF=UI-R-CW0s-cce-b-03-0-UI.s1 /CLONE=UI-R-CW0s-cce-b-03-0-UI /FEA=EST /CNT=15 /TID=Rn.8166.1 /TIER=Stack /STK=12 /UG=Rn.8166 /UG_TITLE=ESTs BI282694 selenoprotein M Selm 498398 NM_001115013 0005783 // endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // not recorded 1388706_at BF524995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF524995 /DB_XREF=gi:11632962 /DB_XREF=UI-R-Y0-acu-e-02-0-UI.r1 /CLONE=UI-R-Y0-acu-e-02-0-UI /FEA=EST /CNT=15 /TID=Rn.7678.1 /TIER=Stack /STK=12 /UG=Rn.7678 /UG_TITLE=ESTs BF524995 LOC362678 RGD1308923 362678 NM_001108698 1388707_at BF284919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284919 /DB_XREF=gi:11215989 /DB_XREF=EST449510 /CLONE=RGIEX74 /FEA=EST /CNT=15 /TID=Rn.13917.1 /TIER=Stack /STK=12 /UG=Rn.13917 /UG_TITLE=ESTs, Weakly similar to A55169 pre-T-cell receptor alpha chain precursor - mouse (M.musculus) BF284919 1388708_at AI236927 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236927 /DB_XREF=gi:3830433 /DB_XREF=EST233489 /CLONE=ROVDM43 /FEA=EST /CNT=21 /TID=Rn.8400.2 /TIER=Stack /STK=12 /UG=Rn.8400 /LL=65139 /UG_GENE=Rps12 /UG_TITLE=ribosomal protein S12 AI236927 DET1 and DDB1 associated 1 Dda1 688813 NM_001134790 1388709_at BF284695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284695 /DB_XREF=gi:11215765 /DB_XREF=EST449286 /CLONE=RGIEV06 /FEA=EST /CNT=16 /TID=Rn.7873.1 /TIER=Stack /STK=12 /UG=Rn.7873 /UG_TITLE=ESTs BF284695 WD repeat domain 43 Wdr43 362703 NM_001037791 1388710_at BI281986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281986 /DB_XREF=gi:14932288 /DB_XREF=UI-R-CU0s-cbv-a-09-0-UI.s1 /CLONE=UI-R-CU0s-cbv-a-09-0-UI /FEA=EST /CNT=16 /TID=Rn.37.1 /TIER=Stack /STK=12 /UG=Rn.37 /UG_TITLE=ESTs BI281986 ras responsive element binding protein 1 Rreb1 306873 NM_001107348 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1388711_at BF282650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282650 /DB_XREF=gi:11213720 /DB_XREF=EST447241 /CLONE=RGIDR27 /FEA=EST /CNT=15 /TID=Rn.2142.1 /TIER=Stack /STK=12 /UG=Rn.2142 /UG_TITLE=ESTs BF282650 interleukin 13 receptor, alpha 1 Il13ra1 252963 NM_145789 0002639 // positive regulation of immunoglobulin production // inferred from direct assay /// 0030890 // positive regulation of B cell proliferation // inferred from direct assay 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // traceable author statement /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016515 // interleukin-13 receptor activity // inferred from physical interaction 1388712_at BM389186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389186 /DB_XREF=gi:18189239 /DB_XREF=UI-R-DZ0-cko-a-18-0-UI.s1 /CLONE=UI-R-DZ0-cko-a-18-0-UI /FEA=EST /CNT=15 /TID=Rn.16600.1 /TIER=Stack /STK=12 /UG=Rn.16600 /UG_TITLE=ESTs BM389186 cytohesin 3 Cyth3 116693 NM_053912 0032012 // regulation of ARF protein signal transduction // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // inferred from electronic annotation /// 0045785 // positive regulation of cell adhesion // not recorded 0001726 // ruffle // inferred from electronic annotation /// 0001726 // ruffle // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005086 // ARF guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from electronic annotation /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // not recorded 1388713_at AW919094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919094 /DB_XREF=gi:8084884 /DB_XREF=EST350398 /CLONE=RGIFC67 /FEA=EST /CNT=15 /TID=Rn.14740.1 /TIER=Stack /STK=12 /UG=Rn.14740 /UG_TITLE=ESTs AW919094 thiamine triphosphatase Thtpa 305889 NM_001007682 0006171 // cAMP biosynthetic process // inferred from electronic annotation /// 0006370 // mRNA capping // inferred from electronic annotation /// 0006772 // thiamin metabolic process // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0031533 // mRNA cap methyltransferase complex // inferred from electronic annotation 0004016 // adenylate cyclase activity // inferred from electronic annotation /// 0004651 // polynucleotide 5'-phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0050333 // thiamin-triphosphatase activity // not recorded /// 0050333 // thiamin-triphosphatase activity // inferred from sequence or structural similarity /// 0050333 // thiamin-triphosphatase activity // inferred from electronic annotation 1388714_at AI008458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008458 /DB_XREF=gi:3222290 /DB_XREF=EST202909 /CLONE=REMAX54 /FEA=EST /CNT=15 /TID=Rn.7876.1 /TIER=Stack /STK=12 /UG=Rn.7876 /UG_TITLE=ESTs AI008458 elongation factor RNA polymerase II Ell 306347 NM_001107304 0001701 // in utero embryonic development // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // inferred from electronic annotation 0005654 // nucleoplasm // not recorded /// 0008023 // transcription elongation factor complex // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0016944 // RNA polymerase II transcription elongation factor activity // inferred from electronic annotation 1388715_at AA818089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818089 /DB_XREF=gi:4198605 /DB_XREF=UI-R-A0-ag-d-12-0-UI.s2 /CLONE=UI-R-A0-ag-d-12-0-UI /FEA=EST /CNT=15 /TID=Rn.3338.1 /TIER=Stack /STK=12 /UG=Rn.3338 /UG_TITLE=ESTs, Highly similar to SYG_HUMAN GLYCYL-TRNA SYNTHETASE (H.sapiens) AA818089 glycyl-tRNA synthetase Gars 297113 XM_001061006 /// XM_216152 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006426 // glycyl-tRNA aminoacylation // inferred from electronic annotation /// 0015966 // diadenosine tetraphosphate biosynthetic process // not recorded /// 0015966 // diadenosine tetraphosphate biosynthetic process // inferred from sequence or structural similarity /// 0015966 // diadenosine tetraphosphate biosynthetic process // inferred from electronic annotation /// 0045055 // regulated secretory pathway // inferred from electronic annotation /// 0045055 // regulated secretory pathway // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // not recorded /// 0005829 // cytosol // not recorded /// 0030141 // stored secretory granule // inferred from electronic annotation /// 0030141 // stored secretory granule // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004820 // glycine-tRNA ligase activity // not recorded /// 0004820 // glycine-tRNA ligase activity // inferred from sequence or structural similarity /// 0004820 // glycine-tRNA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // not recorded /// 0046983 // protein dimerization activity // inferred from sequence or structural similarity /// 0046983 // protein dimerization activity // inferred from electronic annotation 1388716_at BE109525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109525 /DB_XREF=gi:8501630 /DB_XREF=UI-R-BJ1-avp-b-11-0-UI.s1 /CLONE=UI-R-BJ1-avp-b-11-0-UI /FEA=EST /CNT=14 /TID=Rn.34347.1 /TIER=Stack /STK=12 /UG=Rn.34347 /UG_TITLE=ESTs, Weakly similar to T17453 ERG-associated protein ESET - mouse (M.musculus) BE109525 euchromatic histone lysine N-methyltransferase 2 Ehmt2 361798 NM_212463 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000239 // pachytene // inferred from electronic annotation /// 0000239 // pachytene // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007130 // synaptonemal complex assembly // inferred from electronic annotation /// 0007130 // synaptonemal complex assembly // not recorded /// 0007281 // germ cell development // not recorded /// 0007281 // germ cell development // inferred from electronic annotation /// 0007286 // spermatid development // inferred from electronic annotation /// 0007286 // spermatid development // not recorded /// 0009566 // fertilization // inferred from electronic annotation /// 0009566 // fertilization // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0035265 // organ growth // inferred from electronic annotation /// 0035265 // organ growth // not recorded /// 0051567 // histone H3-K9 methylation // inferred from electronic annotation /// 0051567 // histone H3-K9 methylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation 1388717_at BM384163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384163 /DB_XREF=gi:18184216 /DB_XREF=UI-R-DZ0-cks-d-14-0-UI.s1 /CLONE=UI-R-DZ0-cks-d-14-0-UI /FEA=EST /CNT=14 /TID=Rn.11702.1 /TIER=Stack /STK=12 /UG=Rn.11702 /UG_TITLE=ESTs BM384163 protein O-fucosyltransferase 2 Pofut2 309686 NM_001107621 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1388718_at AI104913 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104913 /DB_XREF=gi:3705063 /DB_XREF=EST214202 /CLONE=RHECL17 /FEA=EST /CNT=14 /TID=Rn.1646.2 /TIER=Stack /STK=12 /UG=Rn.1646 /LL=25566 /UG_GENE=Tmod /UG_TITLE=E-Tropomodulin AI104913 tropomodulin 1 Tmod1 25566 NM_013044 0030239 // myofibril assembly // inferred from electronic annotation /// 0030239 // myofibril assembly // not recorded /// 0030241 // skeletal muscle myosin thick filament assembly // not recorded 0005634 // nucleus // inferred from mutant phenotype /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0030016 // myofibril // inferred from electronic annotation /// 0030016 // myofibril // not recorded /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005523 // tropomyosin binding // inferred from direct assay /// 0005523 // tropomyosin binding // inferred from electronic annotation 1388719_at BI279735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279735 /DB_XREF=gi:14927834 /DB_XREF=UI-R-CU0s-cbq-b-03-0-UI.s1 /CLONE=UI-R-CU0s-cbq-b-03-0-UI /FEA=EST /CNT=14 /TID=Rn.7046.1 /TIER=Stack /STK=12 /UG=Rn.7046 /UG_TITLE=ESTs BI279735 1388720_at BM390713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390713 /DB_XREF=gi:18190766 /DB_XREF=UI-R-CN1-cjr-d-17-0-UI.s1 /CLONE=UI-R-CN1-cjr-d-17-0-UI /FEA=EST /CNT=14 /TID=Rn.1130.1 /TIER=Stack /STK=12 /UG=Rn.1130 /UG_TITLE=ESTs BM390713 1388721_at BG380282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380282 /DB_XREF=gi:13304754 /DB_XREF=UI-R-CS0-btv-c-04-0-UI.s1 /CLONE=UI-R-CS0-btv-c-04-0-UI /FEA=EST /CNT=14 /TID=Rn.12650.1 /TIER=Stack /STK=12 /UG=Rn.12650 /UG_TITLE=ESTs BG380282 heat shock protein B8 Hspb8 113906 NM_053612 0006950 // response to stress // inferred from electronic annotation /// 0009408 // response to heat // inferred from electronic annotation 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1388722_at AA945704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945704 /DB_XREF=gi:3105620 /DB_XREF=EST201203 /CLONE=RLUAS15 /FEA=EST /CNT=14 /TID=Rn.7896.1 /TIER=Stack /STK=12 /UG=Rn.7896 /UG_TITLE=ESTs AA945704 DnaJ (Hsp40) homolog, subfamily B, member 1 Dnajb1 361384 NM_001108441 0006457 // protein folding // inferred from electronic annotation /// 0051085 // chaperone mediated protein folding requiring cofactor // not recorded /// 0070389 // chaperone cofactor-dependent protein refolding // not recorded 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1388723_at AI171289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171289 /DB_XREF=gi:4134608 /DB_XREF=EST217244 /CLONE=RMUBI59 /FEA=EST /CNT=14 /TID=Rn.13209.1 /TIER=Stack /STK=12 /UG=Rn.13209 /UG_TITLE=ESTs, Highly similar to JC2472 brain and reproductive organ-expressed protein (H.sapiens) AI171289 brain and reproductive organ-expressed protein Bre 362704 NM_199270 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // not recorded /// 0006302 // double-strand break repair // inferred from sequence or structural similarity /// 0006915 // apoptosis // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from sequence or structural similarity /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010212 // response to ionizing radiation // not recorded /// 0010212 // response to ionizing radiation // inferred from sequence or structural similarity /// 0016568 // chromatin modification // inferred from electronic annotation /// 0031572 // G2/M transition DNA damage checkpoint // not recorded /// 0031572 // G2/M transition DNA damage checkpoint // inferred from sequence or structural similarity /// 0045739 // positive regulation of DNA repair // not recorded /// 0045739 // positive regulation of DNA repair // inferred from sequence or structural similarity /// 0045768 // positive regulation of anti-apoptosis // not recorded /// 0045768 // positive regulation of anti-apoptosis // inferred from sequence or structural similarity 0000152 // nuclear ubiquitin ligase complex // not recorded /// 0000152 // nuclear ubiquitin ligase complex // inferred from sequence or structural similarity /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0070531 // BRCA1-A complex // not recorded /// 0070531 // BRCA1-A complex // inferred from sequence or structural similarity /// 0070552 // BRISC complex // not recorded /// 0070552 // BRISC complex // inferred from sequence or structural similarity 0005164 // tumor necrosis factor receptor binding // not recorded /// 0005164 // tumor necrosis factor receptor binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0031593 // polyubiquitin binding // not recorded /// 0031593 // polyubiquitin binding // inferred from sequence or structural similarity 1388724_at BF284434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284434 /DB_XREF=gi:11215504 /DB_XREF=EST449025 /CLONE=RGIEQ06 /FEA=EST /CNT=14 /TID=Rn.14862.1 /TIER=Stack /STK=12 /UG=Rn.14862 /UG_TITLE=ESTs BF284434 cell division cycle 40 homolog (S. cerevisiae) Cdc40 361859 NM_001108538 0008380 // RNA splicing // not recorded 1388725_at AA892288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892288 /DB_XREF=gi:3019167 /DB_XREF=EST196091 /CLONE=RKIAO63 /FEA=EST /CNT=14 /TID=Rn.3996.1 /TIER=Stack /STK=12 /UG=Rn.3996 /UG_TITLE=ESTs, Highly similar to OBRG MOUSE LEPTIN RECEPTOR GENE-RELATED PROTEIN (M.musculus) AA892288 leptin receptor overlapping transcript Leprot 56766 NM_020099 0000139 // Golgi membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1388726_a_at AA800242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800242 /DB_XREF=gi:2863197 /DB_XREF=EST189739 /CLONE=RHEAM85 /FEA=EST /CNT=80 /TID=Rn.34416.2 /TIER=Stack /STK=16 /UG=Rn.34416 /UG_TITLE=ESTs AA800242 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4 LOC100188932 100188932 NM_001134690 /// NM_001134691 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1388727_at BM387151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387151 /DB_XREF=gi:18187204 /DB_XREF=UI-R-CN1-cji-h-07-0-UI.s1 /CLONE=UI-R-CN1-cji-h-07-0-UI /FEA=EST /CNT=31 /TID=Rn.9274.1 /TIER=Stack /STK=12 /UG=Rn.9274 /UG_TITLE=ESTs BM387151 cell division cycle 26 Cdc26 366381 NM_001013240 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070979 // protein K11-linked ubiquitination // not recorded /// 0070979 // protein K11-linked ubiquitination // inferred from sequence or structural similarity /// 0070979 // protein K11-linked ubiquitination // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005680 // anaphase-promoting complex // not recorded /// 0005680 // anaphase-promoting complex // inferred from sequence or structural similarity /// 0005680 // anaphase-promoting complex // inferred from electronic annotation /// 0005829 // cytosol // not recorded 1388728_at BI282923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282923 /DB_XREF=gi:14934169 /DB_XREF=UI-R-CW0s-ccc-h-12-0-UI.s1 /CLONE=UI-R-CW0s-ccc-h-12-0-UI /FEA=EST /CNT=18 /TID=Rn.8123.1 /TIER=Stack /STK=12 /UG=Rn.8123 /UG_TITLE=ESTs BI282923 lysosomal protein transmembrane 4 beta Laptm4b 315047 NM_001013174 0006810 // transport // inferred from electronic annotation 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1388729_at BF282474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282474 /DB_XREF=gi:11213544 /DB_XREF=EST447065 /CLONE=RGIDN79 /FEA=EST /CNT=16 /TID=Rn.14692.1 /TIER=Stack /STK=12 /UG=Rn.14692 /UG_TITLE=ESTs, Weakly similar to RASH RAT TRANSFORMING PROTEIN P21H-RAS-1 (R.norvegicus) BF282474 Harvey rat sarcoma virus oncogene, subgroup R Rras 361568 NM_001108481 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // not recorded 1388730_at AI407903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407903 /DB_XREF=gi:4251407 /DB_XREF=EST236193 /CLONE=ROVEE73 /FEA=EST /CNT=16 /TID=Rn.8595.1 /TIER=Stack /STK=12 /UG=Rn.8595 /UG_TITLE=ESTs AI407903 CDC42 effector protein (Rho GTPase binding) 4 Cdc42ep4 303653 NM_001107063 0007266 // Rho protein signal transduction // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0031274 // positive regulation of pseudopodium assembly // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1388731_at AA850919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850919 /DB_XREF=gi:2938459 /DB_XREF=EST193687 /CLONE=ROVAO43 /FEA=EST /CNT=14 /TID=Rn.12321.1 /TIER=Stack /STK=12 /UG=Rn.12321 /UG_TITLE=ESTs, Weakly similar to FAS RAT FATTY ACID SYNTHASE (R.norvegicus) AA850919 zinc binding alcohol dehydrogenase, domain containing 2 Zadh2 291403 NM_001106129 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1388732_at AI009820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009820 /DB_XREF=gi:4133123 /DB_XREF=EST204271 /CLONE=RLUBO85 /FEA=EST /CNT=14 /TID=Rn.17967.1 /TIER=Stack /STK=12 /UG=Rn.17967 /UG_TITLE=ESTs AI009820 solute carrier family 35, member F5 Slc35f5 288993 NM_001105950 0016020 // membrane // inferred from electronic annotation 1388733_at AI177631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177631 /DB_XREF=gi:3728269 /DB_XREF=EST221269 /CLONE=RPLCD34 /FEA=EST /CNT=13 /TID=Rn.25528.1 /TIER=Stack /STK=12 /UG=Rn.25528 /UG_TITLE=ESTs, Moderately similar to MYPS RAT MYOSIN-BINDING PROTEIN C, SLOW-TYPE (R.norvegicus) AI177631 bifunctional apoptosis regulator Bfar 304709 NM_001013125 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388734_at AA894193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894193 /DB_XREF=gi:3021072 /DB_XREF=EST197996 /CLONE=RSPAS42 /FEA=EST /CNT=13 /TID=Rn.11542.1 /TIER=Stack /STK=12 /UG=Rn.11542 /UG_TITLE=ESTs AA894193 1388735_at BF405161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405161 /DB_XREF=gi:11393136 /DB_XREF=UI-R-CA1-biq-e-08-0-UI.s1 /CLONE=UI-R-CA1-biq-e-08-0-UI /FEA=EST /CNT=12 /TID=Rn.50158.1 /TIER=Stack /STK=12 /UG=Rn.50158 /UG_TITLE=ESTs BF405161 1388736_at AI175383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175383 /DB_XREF=gi:3726021 /DB_XREF=EST218924 /CLONE=RMUCM80 /FEA=EST /CNT=12 /TID=Rn.13165.1 /TIER=Stack /STK=12 /UG=Rn.13165 /UG_TITLE=ESTs AI175383 coiled-coil domain containing 43 Ccdc43 360637 NM_001100728 1388737_at AI410799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410799 /DB_XREF=gi:4254303 /DB_XREF=EST239092 /CLONE=RHECZ57 /FEA=EST /CNT=12 /TID=Rn.19314.1 /TIER=Stack /STK=12 /UG=Rn.19314 /UG_TITLE=ESTs AI410799 polybromo 1 Pbrm1 306254 XM_001059164 /// XM_240329 0001890 // placenta development // not recorded /// 0007507 // heart development // not recorded 0000776 // kinetochore // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0005515 // protein binding // not recorded 1388738_at AI411227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411227 /DB_XREF=gi:4254731 /DB_XREF=EST239521 /CLONE=RKIER68 /FEA=EST /CNT=12 /TID=Rn.12950.1 /TIER=Stack /STK=12 /UG=Rn.12950 /UG_TITLE=ESTs AI411227 Attractin like 1 Atrnl1 307992 XM_001064577 /// XM_217657 0007186 // G-protein coupled receptor protein signaling pathway // not recorded 0016020 // membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388739_at BF398626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398626 /DB_XREF=gi:11383621 /DB_XREF=UI-R-BS2-ber-a-05-0-UI.s1 /CLONE=UI-R-BS2-ber-a-05-0-UI /FEA=EST /CNT=12 /TID=Rn.7690.1 /TIER=Stack /STK=12 /UG=Rn.7690 /UG_TITLE=ESTs BF398626 ubiquitin protein ligase E3 component n-recognin 7 (putative) Ubr7 314399 NM_001007705 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388740_at AI177645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177645 /DB_XREF=gi:3728283 /DB_XREF=EST221283 /CLONE=RPLCD56 /FEA=EST /CNT=12 /TID=Rn.16824.1 /TIER=Stack /STK=12 /UG=Rn.16824 /UG_TITLE=ESTs, Weakly similar to S69890 mitogen inducible gene mig-2 (H.sapiens) AI177645 fermitin family homolog 3 (Drosophila) Fermt3 309186 NM_001127543 0007159 // leukocyte cell-cell adhesion // not recorded /// 0007159 // leukocyte cell-cell adhesion // inferred from electronic annotation /// 0033622 // integrin activation // not recorded /// 0033622 // integrin activation // inferred from electronic annotation /// 0033632 // regulation of cell-cell adhesion mediated by integrin // not recorded /// 0033632 // regulation of cell-cell adhesion mediated by integrin // inferred from electronic annotation /// 0070527 // platelet aggregation // not recorded /// 0070527 // platelet aggregation // inferred from electronic annotation 0002102 // podosome // not recorded /// 0002102 // podosome // inferred from electronic annotation 0005178 // integrin binding // not recorded /// 0005178 // integrin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1388741_at AW533234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533234 /DB_XREF=gi:7175648 /DB_XREF=UI-R-BU0-ana-d-09-0-UI.s1 /CLONE=UI-R-BU0-ana-d-09-0-UI /FEA=EST /CNT=12 /TID=Rn.7810.1 /TIER=Stack /STK=12 /UG=Rn.7810 /UG_TITLE=ESTs AW533234 cardiomyopathy associated 5 Cmya5 688915 XM_001068814 /// XM_002725910 1388742_at AA945877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945877 /DB_XREF=gi:3105793 /DB_XREF=EST201376 /CLONE=RLUAW36 /FEA=EST /CNT=12 /TID=Rn.7933.1 /TIER=Stack /STK=12 /UG=Rn.7933 /UG_TITLE=ESTs AA945877 1388743_at BI297291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297291 /DB_XREF=gi:14962526 /DB_XREF=UI-R-CV2-cgw-f-10-0-UI.s1 /CLONE=UI-R-CV2-cgw-f-10-0-UI /FEA=EST /CNT=12 /TID=Rn.43522.1 /TIER=Stack /STK=12 /UG=Rn.43522 /UG_TITLE=ESTs BI297291 1388744_at AI599678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599678 /DB_XREF=gi:4608726 /DB_XREF=EST251381 /CLONE=REMEN25 /FEA=EST /CNT=12 /TID=Rn.113.1 /TIER=Stack /STK=12 /UG=Rn.113 /UG_TITLE=ESTs, Highly similar to mini chromosome maintenance deficient 7 (S. cerevisiae) (Mus musculus) (M.musculus) AI599678 minichromosome maintenance complex component 7 Mcm7 288532 NM_001004203 0006260 // DNA replication // not recorded /// 0006260 // DNA replication // traceable author statement /// 0006260 // DNA replication // inferred from electronic annotation /// 0006268 // DNA unwinding involved in replication // not recorded /// 0006268 // DNA unwinding involved in replication // inferred from electronic annotation /// 0006270 // DNA-dependent DNA replication initiation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0042325 // regulation of phosphorylation // not recorded /// 0042325 // regulation of phosphorylation // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0071310 // cellular response to organic substance // inferred from expression pattern /// 0071364 // cellular response to epidermal growth factor stimulus // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0042555 // MCM complex // not recorded /// 0042555 // MCM complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0003678 // DNA helicase activity // not recorded /// 0003678 // DNA helicase activity // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // not recorded /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // traceable author statement /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1388745_at AI228417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228417 /DB_XREF=gi:3812304 /DB_XREF=EST225112 /CLONE=RBRCU52 /FEA=EST /CNT=12 /TID=Rn.18573.1 /TIER=Stack /STK=12 /UG=Rn.18573 /UG_TITLE=ESTs AI228417 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A Sema4a 310630 NM_001012078 0007275 // multicellular organismal development // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1388746_at BI297836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297836 /DB_XREF=gi:14974116 /DB_XREF=UI-R-CV2-chb-c-05-0-UI.s1 /CLONE=UI-R-CV2-chb-c-05-0-UI /FEA=EST /CNT=12 /TID=Rn.66921.1 /TIER=Stack /STK=12 /UG=Rn.66921 /UG_TITLE=ESTs, Weakly similar to GDN RAT GLIA DERIVED NEXIN PRECURSOR (R.norvegicus) BI297836 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3 Serpine3 691375 XM_001073783 /// XM_002725119 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation 1388747_at BG381002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381002 /DB_XREF=gi:13305474 /DB_XREF=UI-R-CT0-bug-a-03-0-UI.s1 /CLONE=UI-R-CT0-bug-a-03-0-UI /FEA=EST /CNT=12 /TID=Rn.39119.1 /TIER=Stack /STK=12 /UG=Rn.39119 /UG_TITLE=ESTs, Moderately similar to LCMT_HUMAN LEUCINE CARBOXYL METHYLTRANSFERASE (PROTEIN-LEUCINE O-METHYLTRANSFERASE) (CGI-68 PROTEIN) (H.sapiens) BG381002 leucine carboxyl methyltransferase 1 Lcmt1 361643 NM_199405 0006481 // C-terminal protein methylation // not recorded 0003880 // protein C-terminal carboxyl O-methyltransferase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1388748_at AW525776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525776 /DB_XREF=gi:7168161 /DB_XREF=UI-R-BJ0p-air-f-11-0-UI.s1 /CLONE=UI-R-BJ0p-air-f-11-0-UI /FEA=EST /CNT=55 /TID=Rn.990.1 /TIER=Stack /STK=11 /UG=Rn.990 /UG_TITLE=ESTs, Highly similar to MTRP MOUSE GOLGI 4-TRANSMEMBRANE SPANNING TRANSPORTER (M.musculus) AW525776 lysosomal protein transmembrane 4 alpha Laptm4a 298875 NM_199384 0006810 // transport // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1388749_at BI278823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278823 /DB_XREF=gi:14926046 /DB_XREF=UI-R-CX0-bwx-c-11-0-UI.s1 /CLONE=UI-R-CX0-bwx-c-11-0-UI /FEA=EST /CNT=29 /TID=Rn.11791.1 /TIER=Stack /STK=11 /UG=Rn.11791 /UG_TITLE=ESTs BI278823 Required for meiotic nuclear division 5 homolog A (S. cerevisiae) Rmnd5a 312439 XM_002726419 /// XM_232051 1388750_at BF417032 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417032 /DB_XREF=gi:11405021 /DB_XREF=UI-R-CN0-blb-b-07-0-UI.s1 /CLONE=UI-R-CN0-blb-b-07-0-UI /FEA=EST /CNT=22 /TID=Rn.13151.2 /TIER=Stack /STK=11 /UG=Rn.13151 /LL=64678 /UG_GENE=Trfr /UG_TITLE=transferrin receptor BF417032 transferrin receptor Tfrc 64678 NM_022712 0001666 // response to hypoxia // inferred from expression pattern /// 0006508 // proteolysis // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // not recorded /// 0006897 // endocytosis // inferred from electronic annotation /// 0006953 // acute-phase response // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010039 // response to iron ion // inferred from expression pattern /// 0010042 // response to manganese ion // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0046688 // response to copper ion // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0005905 // coated pit // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0042470 // melanosome // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070062 // extracellular vesicular exosome // not recorded /// 0070062 // extracellular vesicular exosome // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004998 // transferrin receptor activity // inferred from direct assay /// 0004998 // transferrin receptor activity // traceable author statement /// 0008233 // peptidase activity // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // inferred from physical interaction /// 0051087 // chaperone binding // inferred from physical interaction 1388751_at AW433787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433787 /DB_XREF=gi:6965094 /DB_XREF=UI-R-BJ0p-afh-a-08-0-UI.s1 /CLONE=UI-R-BJ0p-afh-a-08-0-UI /FEA=EST /CNT=19 /TID=Rn.6531.1 /TIER=Stack /STK=11 /UG=Rn.6531 /UG_TITLE=ESTs AW433787 1388752_at AI408078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408078 /DB_XREF=gi:4251582 /DB_XREF=EST236368 /CLONE=ROVEF07 /FEA=EST /CNT=20 /TID=Rn.15652.1 /TIER=Stack /STK=11 /UG=Rn.15652 /UG_TITLE=ESTs, Weakly similar to T12483 hypothetical protein DKFZp564B0769.1 (H.sapiens) AI408078 BCL2-associated transcription factor 1 Bclaf1 293017 NM_001047852 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded 1388753_at AA963797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963797 /DB_XREF=gi:4278739 /DB_XREF=UI-R-E1-gk-g-12-0-UI.s1 /CLONE=UI-R-E1-gk-g-12-0-UI /FEA=EST /CNT=19 /TID=Rn.4228.1 /TIER=Stack /STK=11 /UG=Rn.4228 /UG_TITLE=ESTs AA963797 sulfatase 2 Sulf2 311642 NM_001034927 0008152 // metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004065 // arylsulfatase activity // not recorded /// 0004065 // arylsulfatase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008484 // sulfuric ester hydrolase activity // inferred from electronic annotation 1388754_at AI176839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176839 /DB_XREF=gi:3727477 /DB_XREF=EST220441 /CLONE=ROVBX55 /FEA=EST /CNT=18 /TID=Rn.8529.1 /TIER=Stack /STK=11 /UG=Rn.8529 /UG_TITLE=ESTs AI176839 1388755_at AI179139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179139 /DB_XREF=gi:4135125 /DB_XREF=EST222823 /CLONE=RSPCC35 /FEA=EST /CNT=20 /TID=Rn.7740.1 /TIER=Stack /STK=11 /UG=Rn.7740 /UG_TITLE=ESTs AI179139 Sec23 homolog A (S. cerevisiae) Sec23a 58817 NM_001105732 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0000139 // Golgi membrane // not recorded /// 0030127 // COPII vesicle coat // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1388756_at AI231606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231606 /DB_XREF=gi:3815486 /DB_XREF=EST228294 /CLONE=REMDM64 /FEA=EST /CNT=18 /TID=Rn.15017.1 /TIER=Stack /STK=11 /UG=Rn.15017 /UG_TITLE=ESTs, Weakly similar to YII3_YEAST HYPOTHETICAL 41.9 KD PROTEIN IN SDS3-THS1 INTERGENIC REGION (S.cerevisiae) AI231606 phosphopantothenoylcysteine synthetase Ppcs 298490 NM_001039010 1388757_at AI716801 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716801 /DB_XREF=gi:5034057 /DB_XREF=UI-R-Y0-acg-c-10-0-UI.s1 /CLONE=UI-R-Y0-acg-c-10-0-UI /FEA=EST /CNT=17 /TID=Rn.13010.2 /TIER=Stack /STK=11 /UG=Rn.13010 /LL=25238 /UG_GENE=Adrbk1 /UG_TITLE=adrenergic receptor kinase, beta 1 AI716801 Adrenergic, beta, receptor kinase 1 Adrbk1 25238 NM_012776 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002026 // regulation of the force of heart contraction // not recorded /// 0002029 // desensitization of G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0002029 // desensitization of G-protein coupled receptor protein signaling pathway // not recorded /// 0002029 // desensitization of G-protein coupled receptor protein signaling pathway // traceable author statement /// 0002029 // desensitization of G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0003108 // negative regulation of the force of heart contraction by chemical signal // inferred from electronic annotation /// 0003108 // negative regulation of the force of heart contraction by chemical signal // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007217 // tachykinin receptor signaling pathway // inferred from electronic annotation /// 0007217 // tachykinin receptor signaling pathway // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007568 // aging // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0016310 // phosphorylation // not recorded /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0018107 // peptidyl-threonine phosphorylation // inferred from electronic annotation /// 0018107 // peptidyl-threonine phosphorylation // not recorded /// 0033605 // positive regulation of catecholamine secretion // inferred from direct assay /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0042699 // follicle-stimulating hormone signaling pathway // inferred from direct assay /// 0045744 // negative regulation of G-protein coupled receptor protein signaling pathway // non-traceable author statement /// 0045988 // negative regulation of striated muscle contraction // inferred from electronic annotation /// 0045988 // negative regulation of striated muscle contraction // not recorded /// 0060048 // cardiac muscle contraction // inferred from electronic annotation /// 0060048 // cardiac muscle contraction // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004703 // G-protein coupled receptor kinase activity // inferred from electronic annotation /// 0004703 // G-protein coupled receptor kinase activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0031698 // beta-2 adrenergic receptor binding // traceable author statement /// 0031755 // Edg-2 lysophosphatidic acid receptor binding // inferred from electronic annotation /// 0031755 // Edg-2 lysophosphatidic acid receptor binding // not recorded /// 0047696 // beta-adrenergic receptor kinase activity // inferred from electronic annotation 1388758_at AI009074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009074 /DB_XREF=gi:3222906 /DB_XREF=EST203525 /CLONE=REMBI18 /FEA=EST /CNT=22 /TID=Rn.2707.1 /TIER=Stack /STK=11 /UG=Rn.2707 /UG_TITLE=ESTs AI009074 O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) Ogt 26295 NM_017107 0006493 // protein O-linked glycosylation // inferred from direct assay /// 0070207 // protein homotrimerization // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0070688 // MLL5-L complex // inferred from electronic annotation /// 0070688 // MLL5-L complex // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008375 // acetylglucosaminyltransferase activity // not recorded /// 0008375 // acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0016262 // protein N-acetylglucosaminyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0048029 // monosaccharide binding // inferred from direct assay 1388759_at BM389875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389875 /DB_XREF=gi:18189928 /DB_XREF=UI-R-CN1-cji-d-16-0-UI.s1 /CLONE=UI-R-CN1-cji-d-16-0-UI /FEA=EST /CNT=21 /TID=Rn.16752.1 /TIER=Stack /STK=11 /UG=Rn.16752 /UG_TITLE=ESTs BM389875 1388760_at BI296312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296312 /DB_XREF=gi:14960628 /DB_XREF=UI-R-DK0-cey-h-09-0-UI.s1 /CLONE=UI-R-DK0-cey-h-09-0-UI /FEA=EST /CNT=19 /TID=Rn.9146.1 /TIER=Stack /STK=11 /UG=Rn.9146 /UG_TITLE=ESTs, Weakly similar to T32535 hypothetical protein F15B10.1 - Caenorhabditis elegans (C.elegans) BI296312 solute carrier family 35, member B4 Slc35b4 296969 NM_001106590 0015788 // UDP-N-acetylglucosamine transport // not recorded /// 0015790 // UDP-xylose transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005462 // UDP-N-acetylglucosamine transmembrane transporter activity // not recorded /// 0005464 // UDP-xylose transmembrane transporter activity // not recorded 1388761_at AI180339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180339 /DB_XREF=gi:3730977 /DB_XREF=EST224083 /CLONE=RSPCV03 /FEA=EST /CNT=18 /TID=Rn.1863.1 /TIER=Stack /STK=11 /UG=Rn.1863 /UG_TITLE=ESTs, Highly similar to HDA1 MOUSE HISTONE DEACETYLASE 1 (M.musculus) AI180339 histone deacetylase 1 Hdac1 297893 NM_001025409 0006350 // transcription // inferred from electronic annotation /// 0006476 // protein deacetylation // not recorded /// 0007492 // endoderm development // inferred from electronic annotation /// 0007492 // endoderm development // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010832 // negative regulation of myotube differentiation // not recorded /// 0010870 // positive regulation of receptor biosynthetic process // not recorded /// 0016481 // negative regulation of transcription // inferred from direct assay /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016575 // histone deacetylation // not recorded /// 0016575 // histone deacetylation // inferred from electronic annotation /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0034599 // cellular response to oxidative stress // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0043524 // negative regulation of neuron apoptosis // inferred from mutant phenotype /// 0043922 // negative regulation by host of viral transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // not recorded /// 0070932 // histone H3 deacetylation // inferred from mutant phenotype /// 0070932 // histone H3 deacetylation // not recorded /// 0070933 // histone H4 deacetylation // not recorded 0000118 // histone deacetylase complex // not recorded /// 0000785 // chromatin // inferred from direct assay /// 0000792 // heterochromatin // inferred from electronic annotation /// 0000792 // heterochromatin // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016580 // Sin3 complex // not recorded /// 0016581 // NuRD complex // inferred from electronic annotation /// 0016581 // NuRD complex // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0004407 // histone deacetylase activity // inferred from mutant phenotype /// 0004407 // histone deacetylase activity // not recorded /// 0004407 // histone deacetylase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // inferred from direct assay /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0032403 // protein complex binding // inferred from direct assay /// 0033558 // protein deacetylase activity // not recorded /// 0042802 // identical protein binding // not recorded /// 0042826 // histone deacetylase binding // not recorded 1388762_at BF284125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284125 /DB_XREF=gi:11215195 /DB_XREF=EST448716 /CLONE=RGIEL30 /FEA=EST /CNT=17 /TID=Rn.12233.1 /TIER=Stack /STK=11 /UG=Rn.12233 /UG_TITLE=ESTs BF284125 IQ motif containing GTPase activating protein 1 Iqgap1 361598 NM_001108489 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0031252 // cell leading edge // not recorded /// 0031252 // cell leading edge // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005099 // Ras GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0019903 // protein phosphatase binding // not recorded /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1388763_at AI230762 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230762 /DB_XREF=gi:3814649 /DB_XREF=EST227457 /CLONE=REMDA91 /FEA=EST /CNT=17 /TID=Rn.43993.1 /TIER=Stack /STK=11 /UG=Rn.43993 /UG_TITLE=ESTs, Weakly similar to CALPONIN, ACIDIC ISOFORM (R.norvegicus) AI230762 1388764_at BM387072 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387072 /DB_XREF=gi:18187125 /DB_XREF=UI-R-CN1-cji-g-18-0-UI.s1 /CLONE=UI-R-CN1-cji-g-18-0-UI /FEA=EST /CNT=16 /TID=Rn.1008.1 /TIER=Stack /STK=11 /UG=Rn.1008 /UG_TITLE=ESTs BM387072 IQ motif containing GTPase activating protein 1 Iqgap1 361598 NM_001108489 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0031252 // cell leading edge // not recorded /// 0031252 // cell leading edge // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005099 // Ras GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0019903 // protein phosphatase binding // not recorded /// 0019903 // protein phosphatase binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1388765_at AA946508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946508 /DB_XREF=gi:4132828 /DB_XREF=EST202007 /CLONE=ROVAR95 /FEA=EST /CNT=16 /TID=Rn.8061.1 /TIER=Stack /STK=11 /UG=Rn.8061 /UG_TITLE=ESTs AA946508 V-akt murine thymoma viral oncogene homolog 2 Akt2 25233 NM_017093 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006970 // response to osmotic stress // inferred from expression pattern /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // not recorded /// 0009967 // positive regulation of signal transduction // inferred from mutant phenotype /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0010748 // negative regulation of plasma membrane long-chain fatty acid transport // inferred from electronic annotation /// 0010748 // negative regulation of plasma membrane long-chain fatty acid transport // not recorded /// 0010765 // positive regulation of sodium ion transport // inferred from mutant phenotype /// 0010907 // positive regulation of glucose metabolic process // inferred from electronic annotation /// 0010907 // positive regulation of glucose metabolic process // not recorded /// 0014850 // response to muscle activity // inferred from expression pattern /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032000 // positive regulation of fatty acid beta-oxidation // inferred from electronic annotation /// 0032000 // positive regulation of fatty acid beta-oxidation // not recorded /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from mutant phenotype /// 0032869 // cellular response to insulin stimulus // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0033119 // negative regulation of RNA splicing // inferred from mutant phenotype /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0043154 // negative regulation of caspase activity // inferred from mutant phenotype /// 0043491 // protein kinase B signaling cascade // inferred from mutant phenotype /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from mutant phenotype /// 0045725 // positive regulation of glycogen biosynthetic process // inferred from electronic annotation /// 0045725 // positive regulation of glycogen biosynthetic process // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046326 // positive regulation of glucose import // inferred from mutant phenotype /// 0046326 // positive regulation of glucose import // not recorded /// 0046326 // positive regulation of glucose import // inferred from electronic annotation /// 0046328 // regulation of JNK cascade // inferred from electronic annotation /// 0046328 // regulation of JNK cascade // not recorded /// 0050927 // positive regulation of positive chemotaxis // inferred from direct assay /// 0070887 // cellular response to chemical stimulus // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0031982 // vesicle // inferred from direct assay /// 0032593 // insulin-responsive compartment // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // traceable author statement /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1388766_at AI409049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409049 /DB_XREF=gi:4252553 /DB_XREF=EST237341 /CLONE=RKIDO73 /FEA=EST /CNT=16 /TID=Rn.24607.1 /TIER=Stack /STK=11 /UG=Rn.24607 /UG_TITLE=ESTs, Highly similar to MTX2_MOUSE Metaxin 2 (M.musculus) AI409049 metaxin 2 Mtx2 288150 NM_001008286 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1388767_at BI296393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296393 /DB_XREF=gi:14960772 /DB_XREF=UI-R-DK0-cez-h-01-0-UI.s1 /CLONE=UI-R-DK0-cez-h-01-0-UI /FEA=EST /CNT=21 /TID=Rn.1555.1 /TIER=Stack /STK=11 /UG=Rn.1555 /UG_TITLE=ESTs, Weakly similar to CALPAIN P94, LARGE (R.norvegicus) BI296393 programmed cell death 6 Pdcd6 308061 NM_001107452 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046983 // protein dimerization activity // not recorded /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded /// 0060090 // molecular adaptor activity // inferred from electronic annotation /// 0060090 // molecular adaptor activity // not recorded 1388768_at BI285601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285601 /DB_XREF=gi:14939422 /DB_XREF=UI-R-CW0-bvv-b-08-0-UI.s2 /CLONE=UI-R-CW0-bvv-b-08-0-UI /FEA=EST /CNT=19 /TID=Rn.8004.1 /TIER=Stack /STK=11 /UG=Rn.8004 /UG_TITLE=ESTs BI285601 small G protein signaling modulator 2 Sgsm2 303304 NM_001107020 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1388769_at BI287266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287266 /DB_XREF=gi:14942717 /DB_XREF=UI-R-CW0s-ccl-h-02-0-UI.s1 /CLONE=UI-R-CW0s-ccl-h-02-0-UI /FEA=EST /CNT=17 /TID=Rn.30159.1 /TIER=Stack /STK=11 /UG=Rn.30159 /UG_TITLE=ESTs, Weakly similar to LIS1 MOUSE PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB ALPHA SUBUNIT (R.norvegicus) BI287266 Tnf receptor-associated factor 7 Traf7 360491 NM_001127548 0000185 // activation of MAPKKK activity // not recorded /// 0000185 // activation of MAPKKK activity // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation 0000151 // ubiquitin ligase complex // not recorded /// 0000151 // ubiquitin ligase complex // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388770_at BI275670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275670 /DB_XREF=gi:14919811 /DB_XREF=UI-R-CW0-bwm-c-09-0-UI.s1 /CLONE=UI-R-CW0-bwm-c-09-0-UI /FEA=EST /CNT=17 /TID=Rn.2469.1 /TIER=Stack /STK=11 /UG=Rn.2469 /UG_TITLE=ESTs, Highly similar to ZK652.3.p (Caenorhabditis elegans) (C.elegans) BI275670 ubiquitin-fold modifier 1 Ufm1 365797 NM_001126080 0071569 // protein ufmylation // not recorded /// 0071569 // protein ufmylation // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded 1388771_at BG668182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668182 /DB_XREF=gi:13890104 /DB_XREF=DRACEH11 /CLONE=DRACEH11 /FEA=EST /CNT=16 /TID=Rn.1435.1 /TIER=Stack /STK=11 /UG=Rn.1435 /UG_TITLE=ESTs BG668182 CGG triplet repeat binding protein 1 Cggbp1 288353 NM_001105900 0005634 // nucleus // not recorded 1388772_at AI177016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177016 /DB_XREF=gi:3727654 /DB_XREF=EST220623 /CLONE=ROVBZ79 /FEA=EST /CNT=16 /TID=Rn.14059.1 /TIER=Stack /STK=11 /UG=Rn.14059 /UG_TITLE=ESTs, Highly similar to LSM8_HUMAN U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM8 (H.sapiens) AI177016 LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae) Lsm8 296913 NM_001106585 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388773_at BI278479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278479 /DB_XREF=gi:14925362 /DB_XREF=UI-R-CZ0-byh-b-06-0-UI.s1 /CLONE=UI-R-CZ0-byh-b-06-0-UI /FEA=EST /CNT=16 /TID=Rn.7779.1 /TIER=Stack /STK=11 /UG=Rn.7779 /UG_TITLE=ESTs, Highly similar to I49523 Mouse primary response gene B94 mRNA, 3end - mouse (M.musculus) BI278479 tumor necrosis factor, alpha-induced protein 2 Tnfaip2 299339 NM_001137633 1388774_at BM389032 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389032 /DB_XREF=gi:18189085 /DB_XREF=UI-R-DZ0-cko-d-09-0-UI.s1 /CLONE=UI-R-DZ0-cko-d-09-0-UI /FEA=EST /CNT=16 /TID=Rn.4085.1 /TIER=Stack /STK=11 /UG=Rn.4085 /UG_TITLE=ESTs BM389032 methyl-CpG binding domain protein 2 Mbd2 680172 NM_001115025 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0042711 // maternal behavior // not recorded /// 0043623 // cellular protein complex assembly // not recorded 0000118 // histone deacetylase complex // not recorded /// 0000785 // chromatin // not recorded /// 0000792 // heterochromatin // not recorded /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003729 // mRNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0008327 // methyl-CpG binding // not recorded /// 0019904 // protein domain specific binding // not recorded /// 0035197 // siRNA binding // not recorded /// 0070742 // C2H2 zinc finger domain binding // not recorded 1388775_at AI176439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176439 /DB_XREF=gi:3727077 /DB_XREF=EST220023 /CLONE=ROVBR74 /FEA=EST /CNT=15 /TID=Rn.15726.1 /TIER=Stack /STK=11 /UG=Rn.15726 /UG_TITLE=ESTs AI176439 SFRS12-interacting protein 1 Sfrs12ip1 361888 NM_001008373 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388776_at AI169176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169176 /DB_XREF=gi:3705484 /DB_XREF=EST215010 /CLONE=RKIBO45 /FEA=EST /CNT=15 /TID=Rn.19045.1 /TIER=Stack /STK=11 /UG=Rn.19045 /UG_TITLE=ESTs AI169176 shisa homolog 5 (Xenopus laevis) Shisa5 301013 NM_001006989 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0004871 // signal transducer activity // not recorded /// 0050699 // WW domain binding // not recorded 1388777_at BE113224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113224 /DB_XREF=gi:8505329 /DB_XREF=UI-R-BJ1-awd-a-04-0-UI.s1 /CLONE=UI-R-BJ1-awd-a-04-0-UI /FEA=EST /CNT=15 /TID=Rn.8569.1 /TIER=Stack /STK=11 /UG=Rn.8569 /UG_TITLE=ESTs BE113224 signal sequence receptor, gamma Ssr3 81784 NM_031120 0006613 // cotranslational protein targeting to membrane // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005784 // Sec61 translocon complex // non-traceable author statement /// 0005784 // Sec61 translocon complex // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1388778_at BF284876 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284876 /DB_XREF=gi:11215946 /DB_XREF=EST449467 /CLONE=RGIEX35 /FEA=EST /CNT=15 /TID=Rn.17629.1 /TIER=Stack /STK=11 /UG=Rn.17629 /UG_TITLE=ESTs BF284876 1388779_at BG381516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381516 /DB_XREF=gi:13305988 /DB_XREF=UI-R-CT0-buk-c-02-0-UI.s1 /CLONE=UI-R-CT0-buk-c-02-0-UI /FEA=EST /CNT=15 /TID=Rn.14669.1 /TIER=Stack /STK=11 /UG=Rn.14669 /UG_TITLE=ESTs BG381516 zinc finger protein 180 Zfp180 246279 NM_144757 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1388780_at BF395792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395792 /DB_XREF=gi:11380763 /DB_XREF=UI-R-BT1-bkc-d-02-0-UI.s1 /CLONE=UI-R-BT1-bkc-d-02-0-UI /FEA=EST /CNT=19 /TID=Rn.2055.1 /TIER=Stack /STK=11 /UG=Rn.2055 /UG_TITLE=ESTs BF395792 telomeric repeat binding factor 2, interacting protein Terf2ip 307861 NM_001013143 0000723 // telomere maintenance // not recorded /// 0000723 // telomere maintenance // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0010569 // regulation of double-strand break repair via homologous recombination // inferred from sequence or structural similarity /// 0010833 // telomere maintenance via telomere lengthening // inferred from sequence or structural similarity /// 0031848 // protection from non-homologous end joining at telomere // not recorded /// 0031848 // protection from non-homologous end joining at telomere // inferred from sequence or structural similarity /// 0031848 // protection from non-homologous end joining at telomere // inferred from electronic annotation /// 0032205 // negative regulation of telomere maintenance // inferred from electronic annotation /// 0032205 // negative regulation of telomere maintenance // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from sequence or structural similarity /// 0048239 // negative regulation of DNA recombination at telomere // inferred from sequence or structural similarity /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity /// 0070198 // protein localization to chromosome, telomeric region // inferred from electronic annotation /// 0070198 // protein localization to chromosome, telomeric region // not recorded 0000781 // chromosome, telomeric region // not recorded /// 0000781 // chromosome, telomeric region // inferred from sequence or structural similarity /// 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0000783 // nuclear telomere cap complex // inferred from electronic annotation /// 0000783 // nuclear telomere cap complex // not recorded /// 0000784 // nuclear chromosome, telomeric region // not recorded /// 0000784 // nuclear chromosome, telomeric region // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030870 // Mre11 complex // inferred from electronic annotation /// 0030870 // Mre11 complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388781_at AW434329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434329 /DB_XREF=gi:6965636 /DB_XREF=UI-R-BJ0p-afw-h-10-0-UI.s1 /CLONE=UI-R-BJ0p-afw-h-10-0-UI /FEA=EST /CNT=17 /TID=Rn.2897.1 /TIER=Stack /STK=11 /UG=Rn.2897 /UG_TITLE=ESTs AW434329 1388782_at BE113336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113336 /DB_XREF=gi:8505406 /DB_XREF=UI-R-BJ1-awd-g-12-0-UI.s1 /CLONE=UI-R-BJ1-awd-g-12-0-UI /FEA=EST /CNT=16 /TID=Rn.1671.1 /TIER=Stack /STK=11 /UG=Rn.1671 /UG_TITLE=ESTs, Weakly similar to dHand protein (Rattus norvegicus) (R.norvegicus) BE113336 transcription factor 21 Tcf21 252856 NM_001032397 0001657 // ureteric bud development // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001763 // morphogenesis of a branching structure // not recorded /// 0001763 // morphogenesis of a branching structure // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0001822 // kidney development // inferred from electronic annotation /// 0001944 // vasculature development // not recorded /// 0001944 // vasculature development // inferred from electronic annotation /// 0007530 // sex determination // not recorded /// 0007530 // sex determination // inferred from electronic annotation /// 0007548 // sex differentiation // not recorded /// 0007548 // sex differentiation // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0032835 // glomerulus development // not recorded /// 0032835 // glomerulus development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0048286 // lung alveolus development // not recorded /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048536 // spleen development // not recorded /// 0048536 // spleen development // inferred from electronic annotation /// 0048557 // embryonic digestive tract morphogenesis // inferred from mutant phenotype /// 0048608 // reproductive structure development // not recorded /// 0048608 // reproductive structure development // inferred from electronic annotation /// 0048732 // gland development // inferred from mutant phenotype /// 0060425 // lung morphogenesis // not recorded /// 0060425 // lung morphogenesis // inferred from electronic annotation /// 0060426 // lung vasculature development // not recorded /// 0060426 // lung vasculature development // inferred from electronic annotation /// 0060435 // bronchiole development // not recorded /// 0060435 // bronchiole development // inferred from electronic annotation /// 0060541 // respiratory system development // not recorded /// 0060541 // respiratory system development // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // not recorded /// 0046983 // protein dimerization activity // inferred from electronic annotation 1388783_at BE107162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107162 /DB_XREF=gi:8499267 /DB_XREF=UI-R-BS1-ayq-e-10-0-UI.s1 /CLONE=UI-R-BS1-ayq-e-10-0-UI /FEA=EST /CNT=16 /TID=Rn.6407.1 /TIER=Stack /STK=11 /UG=Rn.6407 /UG_TITLE=ESTs BE107162 high mobility group box 1 Hmgb1 25459 NM_012963 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000902 // cell morphogenesis // inferred from mutant phenotype /// 0001654 // eye development // not recorded /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from direct assay /// 0002437 // inflammatory response to antigenic stimulus // not recorded /// 0006288 // base-excision repair, DNA ligation // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006935 // chemotaxis // inferred from direct assay /// 0007399 // nervous system development // inferred from mutant phenotype /// 0007623 // circadian rhythm // inferred from expression pattern /// 0008156 // negative regulation of DNA replication // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0009408 // response to heat // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010942 // positive regulation of cell death // inferred from mutant phenotype /// 0010976 // positive regulation of neuron projection development // inferred from mutant phenotype /// 0014911 // positive regulation of smooth muscle cell migration // inferred from mutant phenotype /// 0017055 // negative regulation of RNA polymerase II transcriptional preinitiation complex assembly // not recorded /// 0030324 // lung development // not recorded /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0031175 // neuron projection development // inferred from genetic interaction /// 0031532 // actin cytoskeleton reorganization // inferred from mutant phenotype /// 0032392 // DNA geometric change // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0033034 // positive regulation of myeloid cell apoptosis // inferred from direct assay /// 0033151 // V(D)J recombination // not recorded /// 0034341 // response to interferon-gamma // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // not recorded /// 0043280 // positive regulation of caspase activity // not recorded /// 0043388 // positive regulation of DNA binding // not recorded /// 0045639 // positive regulation of myeloid cell differentiation // not recorded /// 0045663 // positive regulation of myoblast differentiation // inferred from mutant phenotype /// 0045819 // positive regulation of glycogen catabolic process // not recorded /// 0045931 // positive regulation of mitotic cell cycle // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0050727 // regulation of inflammatory response // inferred from direct assay /// 0050790 // regulation of catalytic activity // not recorded /// 0050831 // male-specific defense response to bacterium // inferred from direct assay /// 0050930 // induction of positive chemotaxis // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // not recorded /// 0051450 // myoblast proliferation // inferred from mutant phenotype /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern 0000793 // condensed chromosome // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0017053 // transcriptional repressor complex // not recorded /// 0043005 // neuron projection // not recorded 0000400 // four-way junction DNA binding // inferred from direct assay /// 0000401 // open form four-way junction DNA binding // inferred from direct assay /// 0000402 // crossed form four-way junction DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003681 // bent DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005125 // cytokine activity // not recorded /// 0005125 // cytokine activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008097 // 5S rRNA binding // inferred from direct assay /// 0008134 // transcription factor binding // not recorded /// 0008201 // heparin binding // inferred from direct assay /// 0008201 // heparin binding // traceable author statement /// 0008201 // heparin binding // inferred from electronic annotation /// 0008301 // DNA bending activity // inferred from direct assay /// 0008301 // DNA bending activity // not recorded /// 0010858 // calcium-dependent protein kinase regulator activity // not recorded /// 0030295 // protein kinase activator activity // not recorded /// 0046983 // protein dimerization activity // inferred from direct assay /// 0050786 // RAGE receptor binding // inferred from mutant phenotype /// 0050786 // RAGE receptor binding // inferred from physical interaction /// 0051861 // glycolipid binding // inferred from direct assay /// 0070491 // transcription repressor binding // not recorded 1388784_at BI285793 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285793 /DB_XREF=gi:14939800 /DB_XREF=UI-R-CX0s-cct-h-11-0-UI.s1 /CLONE=UI-R-CX0s-cct-h-11-0-UI /FEA=EST /CNT=16 /TID=Rn.17262.1 /TIER=Stack /STK=11 /UG=Rn.17262 /UG_TITLE=ESTs, Highly similar to KFMS RAT MACROPHAGE COLONY STIMULATING FACTOR I RECEPTOR PRECURSOR (R.norvegicus) BI285793 colony stimulating factor 1 receptor Csf1r 307403 NM_001029901 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from expression pattern /// 0008283 // cell proliferation // inferred from direct assay /// 0045672 // positive regulation of osteoclast differentiation // inferred from mutant phenotype 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043235 // receptor complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019955 // cytokine binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1388785_at AA892303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892303 /DB_XREF=gi:4132148 /DB_XREF=EST196106 /CLONE=RKIAO80 /FEA=EST /CNT=15 /TID=Rn.3257.1 /TIER=Stack /STK=11 /UG=Rn.3257 /UG_TITLE=ESTs, Weakly similar to JC5533 scavenger receptor class B type I precursor - rat (R.norvegicus) AA892303 dynein, axonemal, light chain 4 Dnal4 300078 NM_001009666 0007017 // microtubule-based process // inferred from electronic annotation 0005813 // centrosome // not recorded /// 0005875 // microtubule associated complex // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0003777 // microtubule motor activity // not recorded /// 0003777 // microtubule motor activity // inferred from electronic annotation 1388786_at BF407452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407452 /DB_XREF=gi:11395427 /DB_XREF=UI-R-BJ2-bqs-d-07-0-UI.s1 /CLONE=UI-R-BJ2-bqs-d-07-0-UI /FEA=EST /CNT=15 /TID=Rn.7071.1 /TIER=Stack /STK=11 /UG=Rn.7071 /UG_TITLE=ESTs BF407452 1388787_at BM383736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383736 /DB_XREF=gi:18183789 /DB_XREF=UI-R-DM1-ckb-m-17-0-UI.s1 /CLONE=UI-R-DM1-ckb-m-17-0-UI /FEA=EST /CNT=15 /TID=Rn.16992.1 /TIER=Stack /STK=11 /UG=Rn.16992 /UG_TITLE=ESTs, Weakly similar to T31067 BIR repeat containing ubiquitin-conjugating enzyme BRUCE - mouse (M.musculus) BM383736 ubiquitin-conjugating enzyme E2Z Ube2z 303478 NM_001037643 0006915 // apoptosis // inferred from electronic annotation /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1388788_at BG664131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664131 /DB_XREF=gi:13886053 /DB_XREF=DRAAEB11 /CLONE=DRAAEB11 /FEA=EST /CNT=15 /TID=Rn.8819.1 /TIER=Stack /STK=11 /UG=Rn.8819 /UG_TITLE=ESTs, Highly similar to GCDH MOUSE GLUTARYL-COA DEHYDROGENASE PRECURSOR (M.musculus) BG664131 glutaryl-Coenzyme A dehydrogenase Gcdh 364975 NM_001108896 0006637 // acyl-CoA metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0019395 // fatty acid oxidation // inferred from direct assay /// 0046949 // fatty-acyl-CoA biosynthetic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded 0000062 // acyl-CoA binding // inferred from direct assay /// 0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0004361 // glutaryl-CoA dehydrogenase activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from direct assay /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1388789_at AI410352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410352 /DB_XREF=gi:4253856 /DB_XREF=EST238645 /CLONE=RKIDN74 /FEA=EST /CNT=14 /TID=Rn.6617.1 /TIER=Stack /STK=11 /UG=Rn.6617 /UG_TITLE=ESTs AI410352 1388790_at BM384998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384998 /DB_XREF=gi:18185051 /DB_XREF=UI-R-CN1-cjm-e-04-0-UI.s2 /CLONE=UI-R-CN1-cjm-e-04-0-UI /FEA=EST /CNT=14 /TID=Rn.36388.1 /TIER=Stack /STK=11 /UG=Rn.36388 /UG_TITLE=ESTs, Weakly similar to S44904 ZK652.9 protein - Caenorhabditis elegans (C.elegans) BM384998 coenzyme Q5 homolog, methyltransferase (S. cerevisiae) Coq5 304542 NM_001039022 0006744 // ubiquinone biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1388791_at BI275911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275911 /DB_XREF=gi:14920311 /DB_XREF=UI-R-CX0-bxi-a-01-0-UI.s1 /CLONE=UI-R-CX0-bxi-a-01-0-UI /FEA=EST /CNT=14 /TID=Rn.14294.1 /TIER=Stack /STK=11 /UG=Rn.14294 /UG_TITLE=ESTs, Highly similar to T14738 hypothetical protein DKFZp564A2416.1 (H.sapiens) BI275911 spermatogenesis associated, serine-rich 2-like Spats2l 316426 NM_001014102 1388792_at AI599423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599423 /DB_XREF=gi:4608471 /DB_XREF=EST251126 /CLONE=REMEO17 /FEA=EST /CNT=14 /TID=Rn.16950.1 /TIER=Stack /STK=11 /UG=Rn.16950 /UG_TITLE=ESTs, Highly similar to G45G RAT GROWTH ARREST AND DNA-DAMAGE-INDUCIBLE PROTEIN GADD45 GAMMA (R.norvegicus) AI599423 growth arrest and DNA-damage-inducible, gamma Gadd45g 291005 NM_001077640 0000186 // activation of MAPKK activity // inferred from electronic annotation /// 0000186 // activation of MAPKK activity // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388793_at AI408261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408261 /DB_XREF=gi:4251765 /DB_XREF=EST236551 /CLONE=ROVET86 /FEA=EST /CNT=14 /TID=Rn.12777.1 /TIER=Stack /STK=11 /UG=Rn.12777 /UG_TITLE=ESTs AI408261 phosphatidylinositol glycan anchor biosynthesis, class Q Pigq 287159 NM_001007607 0006506 // GPI anchor biosynthetic process // inferred from electronic annotation /// 0016254 // preassembly of GPI anchor in ER membrane // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0017176 // phosphatidylinositol N-acetylglucosaminyltransferase activity // inferred from electronic annotation 1388794_at BE107489 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107489 /DB_XREF=gi:8499594 /DB_XREF=UI-R-BS1-ayu-c-08-0-UI.s1 /CLONE=UI-R-BS1-ayu-c-08-0-UI /FEA=EST /CNT=14 /TID=Rn.19966.1 /TIER=Stack /STK=11 /UG=Rn.19966 /UG_TITLE=ESTs, Highly similar to ROG MOUSE HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN G (M.musculus) BE107489 RNA binding motif protein, X chromosome retrogene-like Rbmxrtl 307779 NM_001107420 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1388795_at AI101500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101500 /DB_XREF=gi:3706391 /DB_XREF=EST210789 /CLONE=RBRBR07 /FEA=EST /CNT=14 /TID=Rn.17209.1 /TIER=Stack /STK=11 /UG=Rn.17209 /UG_TITLE=ESTs AI101500 1388796_at AI169291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169291 /DB_XREF=gi:3705599 /DB_XREF=EST215126 /CLONE=RKIBP78 /FEA=EST /CNT=14 /TID=Rn.8228.1 /TIER=Stack /STK=11 /UG=Rn.8228 /UG_TITLE=ESTs AI169291 Golgi SNAP receptor complex member 1 Gosr1 94189 NM_053584 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0000139 // Golgi membrane // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005801 // cis-Golgi network // inferred from direct assay /// 0005801 // cis-Golgi network // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005484 // SNAP receptor activity // not recorded 1388797_at AI232163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232163 /DB_XREF=gi:3816043 /DB_XREF=EST228851 /CLONE=RKIBX64 /FEA=EST /CNT=14 /TID=Rn.15383.1 /TIER=Stack /STK=11 /UG=Rn.15383 /UG_TITLE=ESTs AI232163 similar to U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform b /// U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 LOC690372 /// U2af2 308335 /// 690372 XM_001060115 /// XM_218195 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0070742 // C2H2 zinc finger domain binding // inferred from electronic annotation 1388798_at AW921519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921519 /DB_XREF=gi:8087343 /DB_XREF=EST352823 /CLONE=RGIIA24 /FEA=EST /CNT=18 /TID=Rn.15203.1 /TIER=Stack /STK=11 /UG=Rn.15203 /UG_TITLE=ESTs, Weakly similar to UBIQUITIN-CONJUGATING ENZYME E2-17 KD 3 (R.norvegicus) AW921519 ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) Ube2e2 361013 NM_001108371 0032020 // ISG15-protein conjugation // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070534 // protein K63-linked ubiquitination // not recorded /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0070979 // protein K11-linked ubiquitination // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation /// 0042296 // ISG15 ligase activity // not recorded 1388799_at BG374559 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374559 /DB_XREF=gi:13299071 /DB_XREF=UI-R-CV1-bta-c-05-0-UI.s1 /CLONE=UI-R-CV1-bta-c-05-0-UI /FEA=EST /CNT=17 /TID=Rn.8854.1 /TIER=Stack /STK=11 /UG=Rn.8854 /UG_TITLE=ESTs BG374559 kelch-like 7 (Drosophila) Klhl7 362303 NM_001012187 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0005515 // protein binding // inferred from electronic annotation 1388800_at AI406667 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406667 /DB_XREF=gi:4250171 /DB_XREF=EST234954 /CLONE=ROVDV44 /FEA=EST /CNT=16 /TID=Rn.6311.1 /TIER=Stack /STK=11 /UG=Rn.6311 /UG_TITLE=ESTs, Moderately similar to RB5A_HUMAN RAS-RELATED PROTEIN RAB-5A (H.sapiens) AI406667 RAB5A, member RAS oncogene family Rab5a 64633 NM_022692 0006184 // GTP catabolic process // not recorded /// 0006897 // endocytosis // inferred from mutant phenotype /// 0006897 // endocytosis // not recorded /// 0006897 // endocytosis // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // non-traceable author statement /// 0031623 // receptor internalization // not recorded /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from mutant phenotype 0001726 // ruffle // not recorded /// 0001726 // ruffle // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0019717 // synaptosome // inferred from direct assay /// 0019717 // synaptosome // non-traceable author statement /// 0030139 // endocytic vesicle // not recorded /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0042589 // zymogen granule membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0019001 // guanyl nucleotide binding // not recorded /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0019003 // GDP binding // not recorded /// 0019003 // GDP binding // inferred from electronic annotation /// 0051021 // GDP-dissociation inhibitor binding // inferred from direct assay 1388801_at AA945103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945103 /DB_XREF=gi:3105019 /DB_XREF=EST200602 /CLONE=RLIAG52 /FEA=EST /CNT=15 /TID=Rn.3591.1 /TIER=Stack /STK=11 /UG=Rn.3591 /UG_TITLE=ESTs AA945103 Similar to RIKEN cDNA 9030221M09 gene RGD1305469 305466 XM_001066163 /// XM_223586 1388802_at AI579422 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI579422 /DB_XREF=gi:4563798 /DB_XREF=UI-R-AG0-wy-c-07-0-UI.s1 /CLONE=UI-R-AG0-wy-c-07-0-UI /FEA=EST /CNT=15 /TID=Rn.9190.1 /TIER=Stack /STK=11 /UG=Rn.9190 /UG_TITLE=ESTs, Weakly similar to HG74_HUMAN OVARIAN GRANULOSA CELL 13.0 KD PROTEIN HGR7 (H.sapiens) AI579422 brain expressed gene 1 Bex1 501625 NM_001037365 0002052 // positive regulation of neuroblast proliferation // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from direct assay /// 0048011 // nerve growth factor receptor signaling pathway // inferred from genetic interaction 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388803_at AA892493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892493 /DB_XREF=gi:3019372 /DB_XREF=EST196296 /CLONE=RKIAS12 /FEA=EST /CNT=14 /TID=Rn.3570.1 /TIER=Stack /STK=11 /UG=Rn.3570 /UG_TITLE=ESTs, Highly similar to S68692 deoxyhypusine synthase (H.sapiens) AA892493 deoxyhypusine synthase Dhps 288923 NM_001004207 0008612 // peptidyl-lysine modification to hypusine // inferred from electronic annotation /// 0008612 // peptidyl-lysine modification to hypusine // not recorded /// 0050983 // spermidine catabolic process to deoxyhypusine, using deoxyhypusine synthase // inferred from direct assay /// 0050983 // spermidine catabolic process to deoxyhypusine, using deoxyhypusine synthase // inferred from electronic annotation /// 0051289 // protein homotetramerization // inferred from direct assay 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0034038 // deoxyhypusine synthase activity // inferred from direct assay /// 0034038 // deoxyhypusine synthase activity // not recorded /// 0034038 // deoxyhypusine synthase activity // inferred from electronic annotation 1388804_at BI300986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300986 /DB_XREF=gi:14977266 /DB_XREF=UI-R-DK0-cfk-e-04-0-UI.s2 /CLONE=UI-R-DK0-cfk-e-04-0-UI /FEA=EST /CNT=14 /TID=Rn.16035.1 /TIER=Stack /STK=11 /UG=Rn.16035 /UG_TITLE=ESTs BI300986 1388805_at BF408792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408792 /DB_XREF=gi:11396767 /DB_XREF=UI-R-BT1-bne-d-06-0-UI.s1 /CLONE=UI-R-BT1-bne-d-06-0-UI /FEA=EST /CNT=14 /TID=Rn.13910.1 /TIER=Stack /STK=11 /UG=Rn.13910 /UG_TITLE=ESTs BF408792 1388806_at AI176039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176039 /DB_XREF=gi:3726677 /DB_XREF=EST219615 /CLONE=ROVBJ71 /FEA=EST /CNT=14 /TID=Rn.16620.1 /TIER=Stack /STK=11 /UG=Rn.16620 /UG_TITLE=ESTs AI176039 tetratricopeptide repeat domain 5 Ttc5 305837 NM_001013131 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1388807_at BG380590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380590 /DB_XREF=gi:13305062 /DB_XREF=UI-R-CT0-btz-b-02-0-UI.s1 /CLONE=UI-R-CT0-btz-b-02-0-UI /FEA=EST /CNT=13 /TID=Rn.36418.1 /TIER=Stack /STK=11 /UG=Rn.36418 /UG_TITLE=ESTs, Moderately similar to dJ717M23.1 (H.sapiens) BG380590 CSRP2 binding protein Csrp2bp 362224 NM_001191855 /// XM_001054440 /// XM_342530 0008152 // metabolic process // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0016573 // histone acetylation // not recorded /// 0022402 // cell cycle process // not recorded 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation 1388808_at AW531224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531224 /DB_XREF=gi:7173638 /DB_XREF=UI-R-BS0-aml-b-02-0-UI.s1 /CLONE=UI-R-BS0-aml-b-02-0-UI /FEA=EST /CNT=13 /TID=Rn.1985.1 /TIER=Stack /STK=11 /UG=Rn.1985 /UG_TITLE=ESTs, Highly similar to RNA polymerase II largest subunit (M.musculus) AW531224 polymerase (RNA) II (DNA directed) polypeptide A Polr2a 363633 XM_001079162 /// XM_002724508 /// XM_002727723 /// XM_343922 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005665 // DNA-directed RNA polymerase II, core complex // inferred from electronic annotation /// 0005665 // DNA-directed RNA polymerase II, core complex // not recorded /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded 1388809_at BM389498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389498 /DB_XREF=gi:18189551 /DB_XREF=UI-R-CN1-cjn-n-07-0-UI.s1 /CLONE=UI-R-CN1-cjn-n-07-0-UI /FEA=EST /CNT=13 /TID=Rn.8142.1 /TIER=Stack /STK=11 /UG=Rn.8142 /UG_TITLE=ESTs, Weakly similar to ASM MOUSE SPHINGOMYELIN PHOSPHODIESTERASE PRECURSOR (M.musculus) BM389498 sphingomyelin phosphodiesterase, acid-like 3A Smpdl3a 294422 NM_001005539 0006685 // sphingomyelin catabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0004767 // sphingomyelin phosphodiesterase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation 1388810_at BI278966 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278966 /DB_XREF=gi:14926327 /DB_XREF=UI-R-DB0-byt-c-09-0-UI.s1 /CLONE=UI-R-DB0-byt-c-09-0-UI /FEA=EST /CNT=13 /TID=Rn.2961.1 /TIER=Stack /STK=11 /UG=Rn.2961 /UG_TITLE=ESTs BI278966 ATP-binding cassette, sub-family E (OABP), member 1 Abce1 361390 NM_001108446 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation 1388811_at BF401593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401593 /DB_XREF=gi:11389568 /DB_XREF=UI-R-CA0-bgm-d-11-0-UI.s1 /CLONE=UI-R-CA0-bgm-d-11-0-UI /FEA=EST /CNT=13 /TID=Rn.7225.1 /TIER=Stack /STK=11 /UG=Rn.7225 /UG_TITLE=ESTs BF401593 1388812_at AI230362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230362 /DB_XREF=gi:3814249 /DB_XREF=EST227057 /CLONE=REMCV60 /FEA=EST /CNT=13 /TID=Rn.17771.1 /TIER=Stack /STK=11 /UG=Rn.17771 /UG_TITLE=ESTs, Weakly similar to T46458 hypothetical protein DKFZp434M102.1 (H.sapiens) AI230362 tumor protein p53 inducible protein 13 Tp53i13 287550 NM_001105818 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1388813_at BE112160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112160 /DB_XREF=gi:8504265 /DB_XREF=UI-R-BJ1-avg-d-04-0-UI.s1 /CLONE=UI-R-BJ1-avg-d-04-0-UI /FEA=EST /CNT=13 /TID=Rn.2733.2 /TIER=Stack /STK=11 /UG=Rn.2733 /LL=79119 /UG_GENE=Arf2 /UG_TITLE=ADP-ribosylation factor 2 BE112160 ADP-ribosylation factor 2 Arf2 79119 NM_024150 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1388814_at AI408110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408110 /DB_XREF=gi:4251614 /DB_XREF=EST236400 /CLONE=ROVEF79 /FEA=EST /CNT=13 /TID=Rn.15893.1 /TIER=Stack /STK=11 /UG=Rn.15893 /UG_TITLE=ESTs AI408110 DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a Ddx19a 292022 NM_001005381 0006917 // induction of apoptosis // inferred from mutant phenotype /// 0010043 // response to zinc ion // inferred from expression pattern 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1388815_at BE329438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329438 /DB_XREF=gi:9203214 /DB_XREF=hq37d02.x1 /CLONE=IMAGE:3121539 /FEA=EST /CNT=13 /TID=Rn.12009.1 /TIER=Stack /STK=11 /UG=Rn.12009 /UG_TITLE=ESTs BE329438 SAPS domain family, member 1 Saps1 361502 NM_001135849 0043666 // regulation of phosphoprotein phosphatase activity // not recorded 0005515 // protein binding // not recorded /// 0019903 // protein phosphatase binding // not recorded 1388816_at AI413060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI413060 /DB_XREF=gi:4256564 /DB_XREF=EST241361 /CLONE=RBRED08 /FEA=EST /CNT=13 /TID=Rn.8421.1 /TIER=Stack /STK=11 /UG=Rn.8421 /UG_TITLE=ESTs AI413060 1388817_at BI284848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284848 /DB_XREF=gi:14937898 /DB_XREF=UI-R-CX0s-ccs-h-11-0-UI.s1 /CLONE=UI-R-CX0s-ccs-h-11-0-UI /FEA=EST /CNT=13 /TID=Rn.7768.1 /TIER=Stack /STK=11 /UG=Rn.7768 /UG_TITLE=ESTs BI284848 family with sequence similarity 63, member A Fam63a 310665 NM_001025118 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388818_at AA946074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946074 /DB_XREF=gi:3105990 /DB_XREF=EST201573 /CLONE=RLUBA94 /FEA=EST /CNT=13 /TID=Rn.17303.1 /TIER=Stack /STK=11 /UG=Rn.17303 /UG_TITLE=ESTs AA946074 1388819_at BM386698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386698 /DB_XREF=gi:18186751 /DB_XREF=UI-R-CN1-cjg-b-14-0-UI.s1 /CLONE=UI-R-CN1-cjg-b-14-0-UI /FEA=EST /CNT=16 /TID=Rn.36846.1 /TIER=Stack /STK=11 /UG=Rn.36846 /UG_TITLE=ESTs BM386698 secretory carrier membrane protein 1 Scamp1 29521 NM_001100636 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0006887 // exocytosis // not recorded /// 0006897 // endocytosis // inferred from direct assay /// 0015031 // protein transport // not recorded /// 0015031 // protein transport // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005802 // trans-Golgi network // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // not recorded /// 0042589 // zymogen granule membrane // inferred from electronic annotation /// 0042589 // zymogen granule membrane // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0055038 // recycling endosome membrane // not recorded /// 0055038 // recycling endosome membrane // inferred from sequence or structural similarity /// 0055038 // recycling endosome membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from direct assay 1388820_at BI286365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286365 /DB_XREF=gi:14940939 /DB_XREF=UI-R-DE0-cak-b-03-0-UI.s1 /CLONE=UI-R-DE0-cak-b-03-0-UI /FEA=EST /CNT=15 /TID=Rn.23966.1 /TIER=Stack /STK=11 /UG=Rn.23966 /UG_TITLE=ESTs BI286365 similar to modulator of estrogen induced transcription RGD1307526 315792 XR_005468 /// XR_009637 1388821_at AI010430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010430 /DB_XREF=gi:4133252 /DB_XREF=EST204881 /CLONE=RLUBZ38 /FEA=EST /CNT=14 /TID=Rn.17572.1 /TIER=Stack /STK=11 /UG=Rn.17572 /UG_TITLE=ESTs AI010430 tribbles homolog 2 (Drosophila) Trib2 313974 NM_001108015 0006468 // protein phosphorylation // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0045081 // negative regulation of interleukin-10 biosynthetic process // inferred from electronic annotation /// 0045081 // negative regulation of interleukin-10 biosynthetic process // not recorded /// 0045599 // negative regulation of fat cell differentiation // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // not recorded 0004672 // protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0055106 // ubiquitin-protein ligase regulator activity // inferred from electronic annotation /// 0055106 // ubiquitin-protein ligase regulator activity // not recorded 1388822_at AI409077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409077 /DB_XREF=gi:4252581 /DB_XREF=EST237369 /CLONE=RKIDK34 /FEA=EST /CNT=14 /TID=Rn.20449.1 /TIER=Stack /STK=11 /UG=Rn.20449 /UG_TITLE=ESTs AI409077 short coiled-coil protein Scoc 364981 NM_001013235 0005634 // nucleus // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation 0005515 // protein binding // not recorded 1388823_at BI274642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274642 /DB_XREF=gi:14885748 /DB_XREF=UI-R-CX0-bws-c-09-0-UI.s1 /CLONE=UI-R-CX0-bws-c-09-0-UI /FEA=EST /CNT=14 /TID=Rn.3305.1 /TIER=Stack /STK=11 /UG=Rn.3305 /UG_TITLE=ESTs BI274642 RAB5B, member RAS oncogene family Rab5b 288779 NM_001079936 0007032 // endosome organization // not recorded /// 0007032 // endosome organization // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0030100 // regulation of endocytosis // not recorded /// 0030100 // regulation of endocytosis // inferred from electronic annotation 0005622 // intracellular // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0030139 // endocytic vesicle // not recorded /// 0030139 // endocytic vesicle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0030742 // GTP-dependent protein binding // not recorded /// 0030742 // GTP-dependent protein binding // inferred from electronic annotation 1388824_at BG381291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381291 /DB_XREF=gi:13305763 /DB_XREF=UI-R-CT0-bui-e-01-0-UI.s1 /CLONE=UI-R-CT0-bui-e-01-0-UI /FEA=EST /CNT=13 /TID=Rn.13503.1 /TIER=Stack /STK=11 /UG=Rn.13503 /UG_TITLE=ESTs BG381291 similar to RIKEN cDNA 4930431E10 RGD1309707 690516 NM_001109598 0006464 // protein modification process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1388825_at BE119400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119400 /DB_XREF=gi:8511505 /DB_XREF=UI-R-CA0-bac-b-05-0-UI.s1 /CLONE=UI-R-CA0-bac-b-05-0-UI /FEA=EST /CNT=13 /TID=Rn.17753.1 /TIER=Stack /STK=11 /UG=Rn.17753 /UG_TITLE=ESTs BE119400 1388826_at BE349657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE349657 /DB_XREF=gi:9261510 /DB_XREF=hq41c06.x1 /CLONE=IMAGE:3121930 /FEA=EST /CNT=13 /TID=Rn.48097.1 /TIER=Stack /STK=11 /UG=Rn.48097 /UG_TITLE=ESTs BE349657 ataxin 2-like Atxn2l 361649 NM_001130097 0016020 // membrane // not recorded 1388827_at AW523419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523419 /DB_XREF=gi:7165804 /DB_XREF=UI-R-BO0-aho-a-05-0-UI.s1 /CLONE=UI-R-BO0-aho-a-05-0-UI /FEA=EST /CNT=13 /TID=Rn.20123.1 /TIER=Stack /STK=11 /UG=Rn.20123 /UG_TITLE=ESTs, Highly similar to HISTONE H2A.Z (R.norvegicus) AW523419 similar to H2A histone family, member V isoform 1 LOC685909 685909 NM_001106019 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1388828_at AI579643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI579643 /DB_XREF=gi:4564019 /DB_XREF=UI-R-AA0-ws-a-03-0-UI.s1 /CLONE=UI-R-AA0-ws-a-03-0-UI /FEA=EST /CNT=13 /TID=Rn.35831.1 /TIER=Stack /STK=11 /UG=Rn.35831 /UG_TITLE=ESTs AI579643 SID1 transmembrane family, member 2 Sidt2 315617 NM_001108142 1388829_at AA946348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946348 /DB_XREF=gi:3106264 /DB_XREF=EST201847 /CLONE=RLUBH06 /FEA=EST /CNT=12 /TID=Rn.7402.1 /TIER=Stack /STK=11 /UG=Rn.7402 /UG_TITLE=ESTs, Weakly similar to Y44E3A.6.p (Caenorhabditis elegans) (C.elegans) AA946348 enhancer of mRNA decapping 4 Edc4 361399 NM_001033068 0000932 // cytoplasmic mRNA processing body // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388830_at BM390687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390687 /DB_XREF=gi:18190740 /DB_XREF=UI-R-CN1-cjr-o-02-0-UI.s1 /CLONE=UI-R-CN1-cjr-o-02-0-UI /FEA=EST /CNT=12 /TID=Rn.30325.1 /TIER=Stack /STK=11 /UG=Rn.30325 /UG_TITLE=ESTs BM390687 protein kinase N2 Pkn2 207122 NM_001105755 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded /// 0042826 // histone deacetylase binding // inferred from sequence or structural similarity /// 0042826 // histone deacetylase binding // inferred from electronic annotation 1388831_at BI277485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277485 /DB_XREF=gi:14923407 /DB_XREF=UI-R-CY0-bxq-f-11-0-UI.s1 /CLONE=UI-R-CY0-bxq-f-11-0-UI /FEA=EST /CNT=12 /TID=Rn.1458.1 /TIER=Stack /STK=11 /UG=Rn.1458 /UG_TITLE=ESTs BI277485 solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2 Slc9a3r2 116501 NM_053811 0048839 // inner ear development // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from mutant phenotype /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from mutant phenotype /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0016247 // channel regulator activity // inferred from mutant phenotype 1388832_at AI104245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104245 /DB_XREF=gi:3708635 /DB_XREF=EST213534 /CLONE=RHEBZ28 /FEA=EST /CNT=12 /TID=Rn.12762.1 /TIER=Stack /STK=11 /UG=Rn.12762 /UG_TITLE=ESTs, Weakly similar to T46363 hypothetical protein DKFZp434O0916.1 (H.sapiens) AI104245 dehydrogenase/reductase (SDR family) X-linked Dhrsx 288525 NM_001105914 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1388833_at AA892270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892270 /DB_XREF=gi:3019149 /DB_XREF=EST196073 /CLONE=RKIAO44 /FEA=EST /CNT=12 /TID=Rn.3290.1 /TIER=Stack /STK=11 /UG=Rn.3290 /UG_TITLE=ESTs AA892270 polymerase (DNA directed), epsilon 3 (p17 subunit) Pole3 298098 NM_001007652 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1388834_at BI291422 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291422 /DB_XREF=gi:14950945 /DB_XREF=UI-R-CV2-cgq-a-12-0-UI.s1 /CLONE=UI-R-CV2-cgq-a-12-0-UI /FEA=EST /CNT=12 /TID=Rn.26912.1 /TIER=Stack /STK=11 /UG=Rn.26912 /UG_TITLE=ESTs BI291422 1388835_at AI575072 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575072 /DB_XREF=gi:4559448 /DB_XREF=UI-R-G0-ul-a-10-0-UI.s1 /CLONE=UI-R-G0-ul-a-10-0-UI /FEA=EST /CNT=12 /TID=Rn.3191.1 /TIER=Stack /STK=11 /UG=Rn.3191 /UG_TITLE=ESTs AI575072 striatin, calmodulin binding protein 4 Strn4 308392 NM_001107480 /// NM_001161809 0000159 // protein phosphatase type 2A complex // not recorded /// 0043197 // dendritic spine // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0032403 // protein complex binding // inferred from direct assay /// 0032403 // protein complex binding // not recorded /// 0051721 // protein phosphatase 2A binding // not recorded /// 0070016 // armadillo repeat domain binding // not recorded 1388836_at AA799981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799981 /DB_XREF=gi:2862936 /DB_XREF=EST189478 /CLONE=RHEAH87 /FEA=EST /CNT=12 /TID=Rn.6263.1 /TIER=Stack /STK=11 /UG=Rn.6263 /UG_TITLE=ESTs AA799981 protein kinase C, eta Prkch 81749 NM_031085 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1388837_at AI408306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408306 /DB_XREF=gi:4251810 /DB_XREF=EST236596 /CLONE=ROVEN09 /FEA=EST /CNT=12 /TID=Rn.8853.1 /TIER=Stack /STK=11 /UG=Rn.8853 /UG_TITLE=ESTs AI408306 solute carrier family 44, member 2 Slc44a2 363024 NM_001134715 0006810 // transport // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation 1388838_at AA943752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943752 /DB_XREF=gi:3103668 /DB_XREF=EST199251 /CLONE=RBRAP23 /FEA=EST /CNT=12 /TID=Rn.6958.1 /TIER=Stack /STK=11 /UG=Rn.6958 /UG_TITLE=ESTs AA943752 chromatin modifying protein 4B Chmp4b 312254 XM_001073409 /// XM_002726259 0015031 // protein transport // inferred from electronic annotation 1388839_at AI233143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233143 /DB_XREF=gi:4135840 /DB_XREF=EST229831 /CLONE=RKICL40 /FEA=EST /CNT=12 /TID=Rn.24449.1 /TIER=Stack /STK=11 /UG=Rn.24449 /UG_TITLE=ESTs, Weakly similar to GNDS RAT GUANINE NUCLEOTIDE DISSOCIATION STIMULATOR RALGDS FORM B (R.norvegicus) AI233143 ral guanine nucleotide dissociation stimulator-like 2 Rgl2 294283 NM_212547 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1388840_at BF397719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397719 /DB_XREF=gi:11382703 /DB_XREF=UI-R-BS2-bed-g-11-0-UI.s1 /CLONE=UI-R-BS2-bed-g-11-0-UI /FEA=EST /CNT=12 /TID=Rn.23536.1 /TIER=Stack /STK=11 /UG=Rn.23536 /UG_TITLE=ESTs BF397719 pleckstrin homology domain containing, family G (with RhoGef domain) member 2 Plekhg2 292750 NM_001134972 0006915 // apoptosis // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1388841_at BI300909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300909 /DB_XREF=gi:14977189 /DB_XREF=UI-R-CV2-cil-d-04-0-UI.s1 /CLONE=UI-R-CV2-cil-d-04-0-UI /FEA=EST /CNT=11 /TID=Rn.38106.1 /TIER=Stack /STK=11 /UG=Rn.38106 /UG_TITLE=ESTs BI300909 1388842_at BG380385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380385 /DB_XREF=gi:13304857 /DB_XREF=UI-R-CT0-btw-e-10-0-UI.s1 /CLONE=UI-R-CT0-btw-e-10-0-UI /FEA=EST /CNT=11 /TID=Rn.1501.1 /TIER=Stack /STK=11 /UG=Rn.1501 /UG_TITLE=ESTs BG380385 serum response factor (c-fos serum response element-binding transcription factor) Srf 501099 NM_001109302 0001569 // patterning of blood vessels // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0001707 // mesoderm formation // not recorded /// 0001829 // trophectodermal cell differentiation // not recorded /// 0001947 // heart looping // not recorded /// 0002042 // cell migration involved in sprouting angiogenesis // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007015 // actin filament organization // not recorded /// 0007369 // gastrulation // not recorded /// 0007507 // heart development // not recorded /// 0007616 // long-term memory // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0009725 // response to hormone stimulus // not recorded /// 0010735 // positive regulation of transcription via serum response element binding // not recorded /// 0030155 // regulation of cell adhesion // not recorded /// 0030336 // negative regulation of cell migration // inferred from mutant phenotype /// 0034097 // response to cytokine stimulus // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // not recorded /// 0045941 // positive regulation of transcription // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045987 // positive regulation of smooth muscle contraction // not recorded /// 0046716 // muscle cell homeostasis // not recorded /// 0048589 // developmental growth // not recorded /// 0051491 // positive regulation of filopodium assembly // not recorded /// 0060261 // positive regulation of transcription initiation from RNA polymerase II promoter // not recorded /// 0090009 // primitive streak formation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003704 // specific RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0010736 // serum response element binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1388843_at BI296771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296771 /DB_XREF=gi:14961530 /DB_XREF=UI-R-DK0-cfz-b-04-0-UI.s1 /CLONE=UI-R-DK0-cfz-b-04-0-UI /FEA=EST /CNT=11 /TID=Rn.34554.1 /TIER=Stack /STK=11 /UG=Rn.34554 /UG_TITLE=ESTs BI296771 DEAD (Asp-Glu-Ala-As) box polypeptide 19B Ddx19b 690693 NM_001005895 /// XM_001075251 /// XM_002725392 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1388844_at AI102904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102904 /DB_XREF=gi:3704785 /DB_XREF=EST212193 /CLONE=REMBU55 /FEA=EST /CNT=11 /TID=Rn.13446.1 /TIER=Stack /STK=11 /UG=Rn.13446 /UG_TITLE=ESTs, Moderately similar to ZN76_HUMAN ZINC FINGER PROTEIN 7 (H.sapiens) AI102904 zinc finger protein 76 (expressed in testis) Znf76 361809 NM_001134755 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388845_at AI144958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144958 /DB_XREF=gi:3666757 /DB_XREF=UI-R-BT0-pp-h-08-0-UI.s1 /CLONE=UI-R-BT0-pp-h-08-0-UI /FEA=EST /CNT=11 /TID=Rn.18855.1 /TIER=Stack /STK=11 /UG=Rn.18855 /UG_TITLE=ESTs AI144958 1388846_at AI227978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227978 /DB_XREF=gi:3811865 /DB_XREF=EST224673 /CLONE=RBRCO31 /FEA=EST /CNT=11 /TID=Rn.1560.1 /TIER=Stack /STK=11 /UG=Rn.1560 /UG_TITLE=ESTs AI227978 BCL2-like 12 (proline rich) Bcl2l12 361567 NM_001108480 1388847_at AI177083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177083 /DB_XREF=gi:3727721 /DB_XREF=EST220690 /CLONE=ROVCA57 /FEA=EST /CNT=11 /TID=Rn.6342.1 /TIER=Stack /STK=11 /UG=Rn.6342 /UG_TITLE=ESTs AI177083 mediator complex subunit 15 Med15 360743 NM_001108325 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016592 // mediator complex // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation 1388848_at AA891760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891760 /DB_XREF=gi:3018639 /DB_XREF=EST195563 /CLONE=RKIAG45 /FEA=EST /CNT=11 /TID=Rn.2343.1 /TIER=Stack /STK=11 /UG=Rn.2343 /UG_TITLE=ESTs AA891760 similar to hypothetical protein MGC13251 RGD1308350 362790 XM_001072750 0016043 // cellular component organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from electronic annotation 1388849_at BG375145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375145 /DB_XREF=gi:13299617 /DB_XREF=UI-R-CV1-bsx-f-07-0-UI.s1 /CLONE=UI-R-CV1-bsx-f-07-0-UI /FEA=EST /CNT=11 /TID=Rn.6476.1 /TIER=Stack /STK=11 /UG=Rn.6476 /UG_TITLE=ESTs, Highly similar to AUP1_MOUSE ANCIENT UBIQUITOUS PROTEIN 1 PRECURSOR (M.musculus) BG375145 ancient ubiquitous protein 1 Aup1 680423 NM_001079899 0008152 // metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation 1388850_at BG671521 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671521 /DB_XREF=gi:13893620 /DB_XREF=DRNBTF03 /CLONE=DRNBTF03 /FEA=EST /CNT=130 /TID=Rn.3277.1 /TIER=Stack /STK=10 /UG=Rn.3277 /UG_TITLE=ESTs, Moderately similar to HS9B RAT HEAT SHOCK PROTEIN HSP 90-BETA (R.norvegicus) BG671521 heat shock protein 90, alpha (cytosolic), class A member 1 Hsp90aa1 299331 NM_175761 0001764 // neuron migration // inferred from mutant phenotype /// 0006457 // protein folding // traceable author statement /// 0006457 // protein folding // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0009408 // response to heat // inferred from expression pattern /// 0009651 // response to salt stress // inferred from expression pattern /// 0010592 // positive regulation of lamellipodium assembly // inferred from mutant phenotype /// 0034619 // cellular chaperone-mediated protein complex assembly // not recorded /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045429 // positive regulation of nitric oxide biosynthetic process // not recorded /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from sequence or structural similarity /// 0050790 // regulation of catalytic activity // not recorded /// 0070096 // mitochondrial outer membrane translocase complex assembly // not recorded 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0031012 // extracellular matrix // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0030235 // nitric-oxide synthase regulator activity // not recorded /// 0030235 // nitric-oxide synthase regulator activity // inferred from sequence or structural similarity /// 0030911 // TPR domain binding // not recorded /// 0030911 // TPR domain binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // not recorded /// 0051082 // unfolded protein binding // traceable author statement /// 0051082 // unfolded protein binding // inferred from electronic annotation 1388851_at BI282281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282281 /DB_XREF=gi:14932894 /DB_XREF=UI-R-CU0s-cby-g-02-0-UI.s1 /CLONE=UI-R-CU0s-cby-g-02-0-UI /FEA=EST /CNT=39 /TID=Rn.3627.1 /TIER=Stack /STK=10 /UG=Rn.3627 /UG_TITLE=ESTs, Highly similar to I56581 dnaK-type molecular chaperone grp75 precursor - rat (R.norvegicus) BI282281 1388852_at AI406307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406307 /DB_XREF=gi:4249811 /DB_XREF=EST234593 /CLONE=RBRDM54 /FEA=EST /CNT=25 /TID=Rn.8989.1 /TIER=Stack /STK=10 /UG=Rn.8989 /UG_TITLE=ESTs, Moderately similar to S21977 Pm5 protein (H.sapiens) AI406307 nodal modulator 1 Nomo1 361578 NM_001108484 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030246 // carbohydrate binding // inferred from electronic annotation 1388853_at BI285231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285231 /DB_XREF=gi:14938660 /DB_XREF=UI-R-DB0-byx-f-08-0-UI.s1 /CLONE=UI-R-DB0-byx-f-08-0-UI /FEA=EST /CNT=23 /TID=Rn.20606.1 /TIER=Stack /STK=10 /UG=Rn.20606 /UG_TITLE=ESTs, Weakly similar to T21364 hypothetical protein F25H5.6 - Caenorhabditis elegans (C.elegans) BI285231 mitochondrial ribosomal protein L54 Mrpl54 299628 NM_001106770 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 1388854_at AI233309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233309 /DB_XREF=gi:3817189 /DB_XREF=EST229997 /CLONE=RKIDD47 /FEA=EST /CNT=23 /TID=Rn.3501.1 /TIER=Stack /STK=10 /UG=Rn.3501 /UG_TITLE=ESTs AI233309 similar to chromosome 3 open reading frame 10 LOC679934 679934 NM_001195476 /// XM_001055004 /// XM_002726399 0005515 // protein binding // not recorded 1388855_at BI284428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284428 /DB_XREF=gi:14937099 /DB_XREF=UI-R-CX0s-ccr-a-04-0-UI.s1 /CLONE=UI-R-CX0s-ccr-a-04-0-UI /FEA=EST /CNT=20 /TID=Rn.2301.1 /TIER=Stack /STK=10 /UG=Rn.2301 /UG_TITLE=ESTs, Highly similar to CUL1_HUMAN CULLIN HOMOLOG 1 (H.sapiens) BI284428 cullin 1 Cul1 362356 NM_001108627 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0019005 // SCF ubiquitin ligase complex // inferred from electronic annotation /// 0019005 // SCF ubiquitin ligase complex // not recorded /// 0031461 // cullin-RING ubiquitin ligase complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation 1388856_at BG374178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374178 /DB_XREF=gi:13298650 /DB_XREF=UI-R-CV1-bsm-c-12-0-UI.s1 /CLONE=UI-R-CV1-bsm-c-12-0-UI /FEA=EST /CNT=20 /TID=Rn.2372.1 /TIER=Stack /STK=10 /UG=Rn.2372 /UG_TITLE=ESTs BG374178 KIT ligand Kitlg 60427 NM_021843 /// NM_021844 0001541 // ovarian follicle development // inferred from direct assay /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0002763 // positive regulation of myeloid leukocyte differentiation // inferred from electronic annotation /// 0002763 // positive regulation of myeloid leukocyte differentiation // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0033026 // negative regulation of mast cell apoptosis // inferred from electronic annotation /// 0033026 // negative regulation of mast cell apoptosis // not recorded /// 0035234 // germ cell programmed cell death // inferred from electronic annotation /// 0035234 // germ cell programmed cell death // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // not recorded /// 0045636 // positive regulation of melanocyte differentiation // inferred from electronic annotation /// 0045636 // positive regulation of melanocyte differentiation // not recorded /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0070668 // positive regulation of mast cell proliferation // inferred from electronic annotation /// 0070668 // positive regulation of mast cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005173 // stem cell factor receptor binding // inferred from electronic annotation /// 0005173 // stem cell factor receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1388857_at BF289044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289044 /DB_XREF=gi:11220114 /DB_XREF=EST453635 /CLONE=RGIHA58 /FEA=EST /CNT=19 /TID=Rn.8735.1 /TIER=Stack /STK=10 /UG=Rn.8735 /UG_TITLE=ESTs, Highly similar to S23B_HUMAN PROTEIN TRANSPORT PROTEIN SEC23 HOMOLOG ISOFORM B (H.sapiens) BF289044 Sec23 homolog B (S. cerevisiae) Sec23b 362226 NM_001108593 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0030127 // COPII vesicle coat // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1388858_at BI283843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283843 /DB_XREF=gi:14935985 /DB_XREF=UI-R-CX0s-ccx-d-04-0-UI.s1 /CLONE=UI-R-CX0s-ccx-d-04-0-UI /FEA=EST /CNT=23 /TID=Rn.8205.1 /TIER=Stack /STK=10 /UG=Rn.8205 /UG_TITLE=ESTs, Moderately similar to MEA6_HUMAN MENINGIOMA-EXPRESSED ANTIGEN 611 (MEA6) (MEA11) (H.sapiens) BI283843 mitogen activated protein kinase kinase 3 Map2k3 303200 NM_001100674 0000165 // MAPKKK cascade // not recorded /// 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0042035 // regulation of cytokine biosynthetic process // not recorded /// 0042035 // regulation of cytokine biosynthetic process // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0060048 // cardiac muscle contraction // not recorded /// 0060048 // cardiac muscle contraction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004708 // MAP kinase kinase activity // not recorded /// 0004708 // MAP kinase kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1388859_at BI289532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289532 /DB_XREF=gi:14947201 /DB_XREF=UI-R-DK0-cff-b-09-0-UI.s1 /CLONE=UI-R-DK0-cff-b-09-0-UI /FEA=EST /CNT=17 /TID=Rn.3025.1 /TIER=Stack /STK=10 /UG=Rn.3025 /UG_TITLE=ESTs BI289532 1388860_at AI175327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175327 /DB_XREF=gi:3725965 /DB_XREF=EST218867 /CLONE=RMUCM04 /FEA=EST /CNT=23 /TID=Rn.13421.1 /TIER=Stack /STK=10 /UG=Rn.13421 /UG_TITLE=ESTs, Weakly similar to Y39A1A.6.p (Caenorhabditis elegans) (C.elegans) AI175327 mitochondrial ribosomal protein L22 Mrpl22 287302 NM_001105781 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1388861_at BF555471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555471 /DB_XREF=gi:11665201 /DB_XREF=UI-R-E0-di-b-01-0-UI.r1 /CLONE=UI-R-E0-di-b-01-0-UI /FEA=EST /CNT=18 /TID=Rn.3351.1 /TIER=Stack /STK=10 /UG=Rn.3351 /UG_TITLE=ESTs, Weakly similar to T24897 hypothetical protein T13H5.2 - Caenorhabditis elegans (C.elegans) BF555471 CLPTM1-like Clptm1l 316916 NM_001108240 1388862_at AI412143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412143 /DB_XREF=gi:4255647 /DB_XREF=EST240437 /CLONE=RKIEG80 /FEA=EST /CNT=17 /TID=Rn.3960.1 /TIER=Stack /STK=10 /UG=Rn.3960 /UG_TITLE=ESTs AI412143 1388863_at BE111651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111651 /DB_XREF=gi:8503756 /DB_XREF=UI-R-BJ1-avv-c-04-0-UI.s1 /CLONE=UI-R-BJ1-avv-c-04-0-UI /FEA=EST /CNT=17 /TID=Rn.8585.1 /TIER=Stack /STK=10 /UG=Rn.8585 /UG_TITLE=ESTs, Highly similar to ubiquitin conjugating enzyme (Rattus norvegicus) (R.norvegicus) BE111651 ubiquitin-conjugating enzyme E2A (RAD6 homolog) Ube2a 298317 NM_001013933 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006281 // DNA repair // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0009411 // response to UV // inferred from electronic annotation /// 0009411 // response to UV // not recorded /// 0033522 // histone H2A ubiquitination // inferred from electronic annotation /// 0033522 // histone H2A ubiquitination // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051865 // protein autoubiquitination // inferred from electronic annotation /// 0051865 // protein autoubiquitination // not recorded /// 0060135 // maternal process involved in female pregnancy // inferred from electronic annotation /// 0060135 // maternal process involved in female pregnancy // not recorded /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0070979 // protein K11-linked ubiquitination // not recorded 0000785 // chromatin // not recorded /// 0000785 // chromatin // inferred from electronic annotation /// 0000790 // nuclear chromatin // inferred from electronic annotation /// 0000790 // nuclear chromatin // not recorded /// 0001741 // XY body // inferred from electronic annotation /// 0001741 // XY body // not recorded 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded 1388864_at BI276976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276976 /DB_XREF=gi:14922406 /DB_XREF=UI-R-CW0-bxo-f-11-0-UI.s1 /CLONE=UI-R-CW0-bxo-f-11-0-UI /FEA=EST /CNT=16 /TID=Rn.22689.1 /TIER=Stack /STK=10 /UG=Rn.22689 /UG_TITLE=ESTs BI276976 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 Ddx54 360815 NM_001191548 /// XM_001079855 /// XM_002724824 /// XM_002727973 /// XM_573400 0006396 // RNA processing // not recorded /// 0016070 // RNA metabolic process // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0004004 // ATP-dependent RNA helicase activity // not recorded /// 0004386 // helicase activity // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0030331 // estrogen receptor binding // not recorded 1388865_at BG378896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378896 /DB_XREF=gi:13303368 /DB_XREF=UI-R-CV1-bvu-b-06-0-UI.s1 /CLONE=UI-R-CV1-bvu-b-06-0-UI /FEA=EST /CNT=16 /TID=Rn.11691.1 /TIER=Stack /STK=10 /UG=Rn.11691 /UG_TITLE=ESTs BG378896 protein phosphatase 4, regulatory subunit 2 Ppp4r2 297486 NM_001106613 0005515 // protein binding // not recorded 1388866_at AA799392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799392 /DB_XREF=gi:2862347 /DB_XREF=EST188889 /CLONE=RHEAA72 /FEA=EST /CNT=18 /TID=Rn.6181.1 /TIER=Stack /STK=10 /UG=Rn.6181 /UG_TITLE=ESTs AA799392 sarcospan Sspn 500364 NM_001109255 0016021 // integral to membrane // inferred from electronic annotation /// 0030133 // transport vesicle // not recorded /// 0042383 // sarcolemma // not recorded 1388867_at AI227852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227852 /DB_XREF=gi:3811739 /DB_XREF=EST224547 /CLONE=RBRCM54 /FEA=EST /CNT=18 /TID=Rn.13772.1 /TIER=Stack /STK=10 /UG=Rn.13772 /UG_TITLE=ESTs AI227852 similar to transcription factor MGC112830 361178 NM_001025718 0000084 // S phase of mitotic cell cycle // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0008544 // epidermis development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation 1388868_at AI172425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172425 /DB_XREF=gi:3712465 /DB_XREF=EST218432 /CLONE=RMUBZ32 /FEA=EST /CNT=17 /TID=Rn.4050.1 /TIER=Stack /STK=10 /UG=Rn.4050 /UG_TITLE=ESTs AI172425 zinc finger, AN1-type domain 5 Zfand5 293960 NM_001106356 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001944 // vasculature development // inferred from electronic annotation /// 0001944 // vasculature development // not recorded /// 0003016 // respiratory system process // inferred from electronic annotation /// 0003016 // respiratory system process // not recorded /// 0010761 // fibroblast migration // inferred from electronic annotation /// 0010761 // fibroblast migration // not recorded /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from electronic annotation /// 0048008 // platelet-derived growth factor receptor signaling pathway // not recorded /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // not recorded /// 0048745 // smooth muscle tissue development // inferred from electronic annotation /// 0048745 // smooth muscle tissue development // not recorded /// 0060324 // face development // inferred from electronic annotation /// 0060324 // face development // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388869_at BF281319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281319 /DB_XREF=gi:11212389 /DB_XREF=EST445910 /CLONE=RGIAD19 /FEA=EST /CNT=15 /TID=Rn.3547.1 /TIER=Stack /STK=10 /UG=Rn.3547 /UG_TITLE=ESTs, Weakly similar to K07H8.1.p (Caenorhabditis elegans) (C.elegans) BF281319 tubulin folding cofactor E Tbce 361255 NM_001012161 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0000226 // microtubule cytoskeleton organization // not recorded /// 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0014889 // muscle atrophy // inferred from electronic annotation /// 0014889 // muscle atrophy // not recorded /// 0048589 // developmental growth // inferred from electronic annotation /// 0048589 // developmental growth // not recorded /// 0048936 // peripheral nervous system neuron axonogenesis // inferred from electronic annotation /// 0048936 // peripheral nervous system neuron axonogenesis // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 1388870_at BF284305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284305 /DB_XREF=gi:11215375 /DB_XREF=EST448896 /CLONE=RGIEO16 /FEA=EST /CNT=15 /TID=Rn.17631.1 /TIER=Stack /STK=10 /UG=Rn.17631 /UG_TITLE=ESTs BF284305 Musashi homolog 2 (Drosophila) Msi2 360596 XM_001081205 /// XM_340876 0048864 // stem cell development // not recorded 0005737 // cytoplasm // not recorded /// 0005844 // polysome // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003727 // single-stranded RNA binding // not recorded /// 0008266 // poly(U) RNA binding // not recorded 1388871_at BG378089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378089 /DB_XREF=gi:13302561 /DB_XREF=UI-R-CT0-bvn-g-07-0-UI.s1 /CLONE=UI-R-CT0-bvn-g-07-0-UI /FEA=EST /CNT=15 /TID=Rn.18018.1 /TIER=Stack /STK=10 /UG=Rn.18018 /UG_TITLE=ESTs, Weakly similar to S72249 trithorax protein ash2 - fruit fly (D.melanogaster) BG378089 ash2 (absent, small, or homeotic)-like (Drosophila) Ash2l 290829 NM_001106089 0008284 // positive regulation of cell proliferation // not recorded /// 0043627 // response to estrogen stimulus // not recorded /// 0051568 // histone H3-K4 methylation // not recorded 0005634 // nucleus // not recorded /// 0035097 // histone methyltransferase complex // not recorded /// 0071339 // MLL1 complex // not recorded 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0042800 // histone methyltransferase activity (H3-K4 specific) // not recorded 1388872_at BI290053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290053 /DB_XREF=gi:14948259 /DB_XREF=UI-R-DK0-cfr-c-09-0-UI.s1 /CLONE=UI-R-DK0-cfr-c-09-0-UI /FEA=EST /CNT=28 /TID=Rn.10780.2 /TIER=Stack /STK=10 /UG=Rn.10780 /LL=89784 /UG_GENE=Idi1 /UG_TITLE=isopentenyl-diphosphate delta isomerase BI290053 1388873_at AA891883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891883 /DB_XREF=gi:3018762 /DB_XREF=EST195686 /CLONE=RKIAI11 /FEA=EST /CNT=18 /TID=Rn.8277.1 /TIER=Stack /STK=10 /UG=Rn.8277 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) AA891883 thyroid hormone receptor interactor 12 Trip12 316575 NM_001031659 0006464 // protein modification process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0046966 // thyroid hormone receptor binding // not recorded 1388874_at BE113032 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113032 /DB_XREF=gi:8505137 /DB_XREF=UI-R-BJ1-awf-f-02-0-UI.s1 /CLONE=UI-R-BJ1-awf-f-02-0-UI /FEA=EST /CNT=17 /TID=Rn.12182.1 /TIER=Stack /STK=10 /UG=Rn.12182 /UG_TITLE=ESTs BE113032 metastasis suppressor 1 Mtss1 362918 NM_001130563 0007015 // actin filament organization // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0030041 // actin filament polymerization // not recorded /// 0046847 // filopodium assembly // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0015629 // actin cytoskeleton // not recorded 0003779 // actin binding // not recorded /// 0003785 // actin monomer binding // not recorded /// 0005102 // receptor binding // not recorded /// 0008093 // cytoskeletal adaptor activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation 1388875_at AI410353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410353 /DB_XREF=gi:4253857 /DB_XREF=EST238646 /CLONE=RKIDN76 /FEA=EST /CNT=17 /TID=Rn.2988.1 /TIER=Stack /STK=10 /UG=Rn.2988 /UG_TITLE=ESTs, Weakly similar to T22484 hypothetical protein F52B11.1 - Caenorhabditis elegans (C.elegans) AI410353 CXXC finger 1 (PHD domain) Cxxc1 291440 NM_001079698 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0051568 // histone H3-K4 methylation // not recorded 0005634 // nucleus // not recorded /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded /// 0016607 // nuclear speck // not recorded /// 0035097 // histone methyltransferase complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0042800 // histone methyltransferase activity (H3-K4 specific) // not recorded /// 0045322 // unmethylated CpG binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1388876_at AI231802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231802 /DB_XREF=gi:3815682 /DB_XREF=EST228490 /CLONE=RHECO45 /FEA=EST /CNT=16 /TID=Rn.1192.1 /TIER=Stack /STK=10 /UG=Rn.1192 /UG_TITLE=ESTs AI231802 1388877_at BM386940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386940 /DB_XREF=gi:18186993 /DB_XREF=UI-R-CN1-cjh-p-22-0-UI.s1 /CLONE=UI-R-CN1-cjh-p-22-0-UI /FEA=EST /CNT=16 /TID=Rn.9035.1 /TIER=Stack /STK=10 /UG=Rn.9035 /UG_TITLE=ESTs, Weakly similar to T20412 hypothetical protein E02A10.1 - Caenorhabditis elegans (C.elegans) BM386940 mitochondrial ribosomal protein S5 Mrps5 296134 NM_001106505 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388878_at BI279756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279756 /DB_XREF=gi:14927877 /DB_XREF=UI-R-CU0s-cbq-d-08-0-UI.s1 /CLONE=UI-R-CU0s-cbq-d-08-0-UI /FEA=EST /CNT=15 /TID=Rn.6722.1 /TIER=Stack /STK=10 /UG=Rn.6722 /UG_TITLE=ESTs, Highly similar to A61382 phosphorylation regulatory protein HP-10 (H.sapiens) BI279756 NIN1/RPN12 binding protein 1 homolog (S. cerevisiae) Nob1 291996 NM_199086 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1388879_at BG669292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669292 /DB_XREF=gi:13891214 /DB_XREF=DRNAAD04 /CLONE=DRNAAD04 /FEA=EST /CNT=15 /TID=Rn.11445.1 /TIER=Stack /STK=10 /UG=Rn.11445 /UG_TITLE=ESTs BG669292 similar to ABI gene family, member 3 (NESH) binding protein RGD1562717 363767 XM_001057627 /// XM_002724710 /// XM_002724711 /// XM_002724712 /// XM_002727880 /// XM_002727881 /// XM_002727882 /// XM_344015 1388880_at BI278962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278962 /DB_XREF=gi:14926319 /DB_XREF=UI-R-DB0-byt-c-03-0-UI.s1 /CLONE=UI-R-DB0-byt-c-03-0-UI /FEA=EST /CNT=15 /TID=Rn.17882.1 /TIER=Stack /STK=10 /UG=Rn.17882 /UG_TITLE=ESTs BI278962 1388881_at BG380656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380656 /DB_XREF=gi:13305128 /DB_XREF=UI-R-CT0-btz-h-03-0-UI.s1 /CLONE=UI-R-CT0-btz-h-03-0-UI /FEA=EST /CNT=14 /TID=Rn.4311.1 /TIER=Stack /STK=10 /UG=Rn.4311 /UG_TITLE=ESTs BG380656 phosphoglycolate phosphatase Pgp 287115 NM_001169152 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1388882_at AA891798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891798 /DB_XREF=gi:4132086 /DB_XREF=EST195601 /CLONE=RKIAG93 /FEA=EST /CNT=14 /TID=Rn.1464.1 /TIER=Stack /STK=10 /UG=Rn.1464 /UG_TITLE=ESTs, Weakly similar to FKB1 RAT FK506-BINDING PROTEIN (R.norvegicus) AA891798 FK506 binding protein 3 Fkbp3 299104 NM_001106736 0006457 // protein folding // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1388883_at BF281976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281976 /DB_XREF=gi:11213046 /DB_XREF=EST446567 /CLONE=RGIDA28 /FEA=EST /CNT=14 /TID=Rn.13249.1 /TIER=Stack /STK=10 /UG=Rn.13249 /UG_TITLE=ESTs BF281976 polymerase (DNA-directed), delta 4 Pold4 361698 NM_001013195 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0006260 // DNA replication // inferred from electronic annotation /// 0006261 // DNA-dependent DNA replication // inferred from mutant phenotype /// 0006297 // nucleotide-excision repair, DNA gap filling // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0043625 // delta DNA polymerase complex // inferred by curator 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388884_at BM390774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390774 /DB_XREF=gi:18190827 /DB_XREF=UI-R-CN1-cjr-p-01-0-UI.s1 /CLONE=UI-R-CN1-cjr-p-01-0-UI /FEA=EST /CNT=14 /TID=Rn.3194.1 /TIER=Stack /STK=10 /UG=Rn.3194 /UG_TITLE=ESTs, Weakly similar to F Chain F, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 (R.norvegicus) BM390774 similar to RIKEN cDNA 1810022C23 RGD1310224 291076 NM_001009275 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation 1388885_at BI275921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275921 /DB_XREF=gi:14920330 /DB_XREF=UI-R-CX0-bxi-a-11-0-UI.s1 /CLONE=UI-R-CX0-bxi-a-11-0-UI /FEA=EST /CNT=14 /TID=Rn.22786.1 /TIER=Stack /STK=10 /UG=Rn.22786 /UG_TITLE=ESTs BI275921 anterior pharynx defective 1 homolog A (C. elegans) Aph1a 365872 NM_001014255 0001656 // metanephros development // not recorded /// 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0006915 // apoptosis // not recorded /// 0007220 // Notch receptor processing // not recorded /// 0008152 // metabolic process // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0016485 // protein processing // inferred from electronic annotation /// 0016485 // protein processing // not recorded /// 0031293 // membrane protein intracellular domain proteolysis // not recorded /// 0042987 // amyloid precursor protein catabolic process // not recorded /// 0043085 // positive regulation of catalytic activity // inferred from electronic annotation /// 0043085 // positive regulation of catalytic activity // not recorded 0005783 // endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0004175 // endopeptidase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1388886_at BM392240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392240 /DB_XREF=gi:18192293 /DB_XREF=UI-R-DO1-ckp-h-05-0-UI.s1 /CLONE=UI-R-DO1-ckp-h-05-0-UI /FEA=EST /CNT=20 /TID=Rn.25186.1 /TIER=Stack /STK=10 /UG=Rn.25186 /UG_TITLE=ESTs, Highly similar to YS64_HUMAN HYPOTHETICAL PROTEIN S164 (H.sapiens) BM392240 RNA binding motif protein 25 Rbm25 366693 NM_001108984 0006397 // mRNA processing // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1388887_at AI178222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178222 /DB_XREF=gi:3728860 /DB_XREF=EST221887 /CLONE=RPLCN70 /FEA=EST /CNT=17 /TID=Rn.916.1 /TIER=Stack /STK=10 /UG=Rn.916 /UG_TITLE=ESTs AI178222 glycoprotein, alpha-galactosyltransferase 1 Ggta1 246766 NM_145674 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1388888_at BI274615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274615 /DB_XREF=gi:14885685 /DB_XREF=UI-R-CX0-bws-a-05-0-UI.s1 /CLONE=UI-R-CX0-bws-a-05-0-UI /FEA=EST /CNT=17 /TID=Rn.7228.1 /TIER=Stack /STK=10 /UG=Rn.7228 /UG_TITLE=ESTs BI274615 1388889_at AI598417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598417 /DB_XREF=gi:4607465 /DB_XREF=EST250120 /CLONE=REMDP25 /FEA=EST /CNT=16 /TID=Rn.7753.1 /TIER=Stack /STK=10 /UG=Rn.7753 /UG_TITLE=ESTs AI598417 endoplasmic reticulum metallopeptidase 1 Ermp1 373544 NM_184050 0001541 // ovarian follicle development // inferred from mutant phenotype /// 0006508 // proteolysis // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388890_at BM390316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390316 /DB_XREF=gi:18190369 /DB_XREF=UI-R-CN1-cjq-i-06-0-UI.s1 /CLONE=UI-R-CN1-cjq-i-06-0-UI /FEA=EST /CNT=15 /TID=Rn.11700.1 /TIER=Stack /STK=10 /UG=Rn.11700 /UG_TITLE=ESTs BM390316 1388891_at BG374285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374285 /DB_XREF=gi:13298757 /DB_XREF=UI-R-CV1-bsn-e-12-0-UI.s1 /CLONE=UI-R-CV1-bsn-e-12-0-UI /FEA=EST /CNT=14 /TID=Rn.16709.1 /TIER=Stack /STK=10 /UG=Rn.16709 /UG_TITLE=ESTs BG374285 Parvin, beta Parvb 362973 NM_001134780 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded 1388892_at BF395178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395178 /DB_XREF=gi:11380143 /DB_XREF=UI-R-CM0-bjj-g-08-0-UI.s1 /CLONE=UI-R-CM0-bjj-g-08-0-UI /FEA=EST /CNT=14 /TID=Rn.22338.1 /TIER=Stack /STK=10 /UG=Rn.22338 /UG_TITLE=ESTs, Weakly similar to RAB2 RAT RAS-RELATED PROTEIN RAB-2 (R.norvegicus) BF395178 RAB2B, member RAS oncogene family Rab2b 305853 NM_001037645 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1388893_at AI411616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411616 /DB_XREF=gi:4255120 /DB_XREF=EST239910 /CLONE=ROVES45 /FEA=EST /CNT=14 /TID=Rn.22558.1 /TIER=Stack /STK=10 /UG=Rn.22558 /UG_TITLE=ESTs AI411616 glycosyltransferase 8 domain containing 1 Glt8d1 306253 NM_001007683 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1388894_at BG664174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664174 /DB_XREF=gi:13886096 /DB_XREF=DRABAC11 /CLONE=DRABAC11 /FEA=EST /CNT=14 /TID=Rn.22112.1 /TIER=Stack /STK=10 /UG=Rn.22112 /UG_TITLE=ESTs BG664174 1388895_at AI175791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175791 /DB_XREF=gi:4134819 /DB_XREF=EST219361 /CLONE=ROVBF48 /FEA=EST /CNT=13 /TID=Rn.15402.1 /TIER=Stack /STK=10 /UG=Rn.15402 /UG_TITLE=ESTs AI175791 hypothetical LOC290577 LOC290577 290577 XM_002725158 /// XM_002728376 0005488 // binding // inferred from electronic annotation 1388896_at BF404603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404603 /DB_XREF=gi:11392578 /DB_XREF=UI-R-CA1-bih-d-07-0-UI.s1 /CLONE=UI-R-CA1-bih-d-07-0-UI /FEA=EST /CNT=13 /TID=Rn.25188.1 /TIER=Stack /STK=10 /UG=Rn.25188 /UG_TITLE=ESTs BF404603 ubiquitin specific peptidase 33 Usp33 310960 NM_001191094 /// XM_001068666 /// XM_001080019 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016579 // protein deubiquitination // not recorded /// 0016579 // protein deubiquitination // inferred from electronic annotation /// 0070536 // protein K63-linked deubiquitination // inferred from electronic annotation /// 0070536 // protein K63-linked deubiquitination // not recorded /// 0071108 // protein K48-linked deubiquitination // inferred from electronic annotation /// 0071108 // protein K48-linked deubiquitination // not recorded 0001664 // G-protein-coupled receptor binding // inferred from electronic annotation /// 0001664 // G-protein-coupled receptor binding // not recorded /// 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004197 // cysteine-type endopeptidase activity // not recorded /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0043130 // ubiquitin binding // not recorded 1388897_at BI282734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282734 /DB_XREF=gi:14933796 /DB_XREF=UI-R-CW0s-cce-e-10-0-UI.s1 /CLONE=UI-R-CW0s-cce-e-10-0-UI /FEA=EST /CNT=13 /TID=Rn.33018.1 /TIER=Stack /STK=10 /UG=Rn.33018 /UG_TITLE=ESTs BI282734 WD repeat domain 5 Wdr5 362093 NM_001039034 0001501 // skeletal system development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0034968 // histone lysine methylation // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051568 // histone H3-K4 methylation // not recorded /// 0051568 // histone H3-K4 methylation // inferred from sequence or structural similarity 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0035097 // histone methyltransferase complex // not recorded /// 0035097 // histone methyltransferase complex // inferred from sequence or structural similarity /// 0071339 // MLL1 complex // not recorded /// 0071339 // MLL1 complex // inferred from sequence or structural similarity 0005515 // protein binding // not recorded /// 0035064 // methylated histone residue binding // inferred from sequence or structural similarity /// 0042800 // histone methyltransferase activity (H3-K4 specific) // not recorded 1388898_at AI236601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236601 /DB_XREF=gi:3830107 /DB_XREF=EST233163 /CLONE=ROVDI22 /FEA=EST /CNT=13 /TID=Rn.37805.1 /TIER=Stack /STK=10 /UG=Rn.37805 /UG_TITLE=ESTs AI236601 heat shock 105kDa/110kDa protein 1 Hsph1 288444 NM_001011901 0006950 // response to stress // inferred from electronic annotation /// 0051085 // chaperone mediated protein folding requiring cofactor // inferred from electronic annotation /// 0051085 // chaperone mediated protein folding requiring cofactor // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1388899_at BE098818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098818 /DB_XREF=gi:8490687 /DB_XREF=UI-R-BJ1-ate-c-01-0-UI.s1 /CLONE=UI-R-BJ1-ate-c-01-0-UI /FEA=EST /CNT=13 /TID=Rn.25434.1 /TIER=Stack /STK=10 /UG=Rn.25434 /UG_TITLE=ESTs BE098818 1388900_at BG381414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381414 /DB_XREF=gi:13305886 /DB_XREF=UI-R-CT0-buj-a-07-0-UI.s1 /CLONE=UI-R-CT0-buj-a-07-0-UI /FEA=EST /CNT=13 /TID=Rn.2978.1 /TIER=Stack /STK=10 /UG=Rn.2978 /UG_TITLE=ESTs BG381414 1388901_at AW534837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534837 /DB_XREF=gi:7177251 /DB_XREF=UI-R-BS0-anx-a-02-0-UI.s1 /CLONE=UI-R-BS0-anx-a-02-0-UI /FEA=EST /CNT=13 /TID=Rn.11983.1 /TIER=Stack /STK=10 /UG=Rn.11983 /UG_TITLE=ESTs, Weakly similar to FKB5 MOUSE 51 KDA FK506-BINDING PROTEIN (M.musculus) AW534837 FK506 binding protein 5 Fkbp5 361810 NM_001012174 0006457 // protein folding // inferred from electronic annotation 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // not recorded 1388902_at AI599031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599031 /DB_XREF=gi:4608079 /DB_XREF=EST250734 /CLONE=REMEA05 /FEA=EST /CNT=13 /TID=Rn.770.1 /TIER=Stack /STK=10 /UG=Rn.770 /UG_TITLE=ESTs, Moderately similar to LYOX RAT PROTEIN-LYSINE 6-OXIDASE PRECURSOR (R.norvegicus) AI599031 lysyl oxidase-like 1 Loxl1 315714 NM_001012125 0008152 // metabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005578 // proteinaceous extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016641 // oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor // inferred from electronic annotation /// 0016641 // oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor // not recorded 1388903_at AI179335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179335 /DB_XREF=gi:3729973 /DB_XREF=EST223031 /CLONE=RSPCF41 /FEA=EST /CNT=26 /TID=Rn.25088.1 /TIER=Stack /STK=10 /UG=Rn.25088 /UG_TITLE=ESTs, Highly similar to 9123 MOUSE PROTEIN 9123 (M.musculus) AI179335 dynein light chain Tctex-type 3 Dynlt3 363448 NM_001013228 0007346 // regulation of mitotic cell cycle // inferred from mutant phenotype 0000776 // kinetochore // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005868 // cytoplasmic dynein complex // inferred from direct assay /// 0005868 // cytoplasmic dynein complex // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // inferred from physical interaction 1388904_at AI236597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236597 /DB_XREF=gi:3830103 /DB_XREF=EST233159 /CLONE=ROVDI17 /FEA=EST /CNT=17 /TID=Rn.8478.1 /TIER=Stack /STK=10 /UG=Rn.8478 /UG_TITLE=ESTs, Weakly similar to JC7185 chromosome 1 C1orf9 protein (H.sapiens) AI236597 hypothetical protein Dd25 Dd25 360863 NM_199403 0001503 // ossification // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030867 // rough endoplasmic reticulum membrane // inferred from electronic annotation 1388905_at AI230770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230770 /DB_XREF=gi:4135588 /DB_XREF=EST227465 /CLONE=REMDB04 /FEA=EST /CNT=16 /TID=Rn.37168.1 /TIER=Stack /STK=10 /UG=Rn.37168 /UG_TITLE=ESTs, Weakly similar to A43932 mucin 2 precursor, intestinal (H.sapiens) AI230770 membralin Mbrl 299608 NM_001100886 1388906_at BM389311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389311 /DB_XREF=gi:18189364 /DB_XREF=UI-R-DZ0-cko-j-18-0-UI.s1 /CLONE=UI-R-DZ0-cko-j-18-0-UI /FEA=EST /CNT=15 /TID=Rn.3481.1 /TIER=Stack /STK=10 /UG=Rn.3481 /UG_TITLE=ESTs BM389311 similar to novel protein similar to Tensin Tns RGD1564174 360980 XM_002725003 /// XM_341256 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0048286 // lung alveolus development // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1388907_at BF400873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400873 /DB_XREF=gi:11388848 /DB_XREF=UI-R-CA0-bhg-h-01-0-UI.s1 /CLONE=UI-R-CA0-bhg-h-01-0-UI /FEA=EST /CNT=15 /TID=Rn.8679.1 /TIER=Stack /STK=10 /UG=Rn.8679 /UG_TITLE=ESTs, Moderately similar to T08719 hypothetical protein DKFZp566B183.1 (H.sapiens) BF400873 NECAP endocytosis associated 1 Necap1 312694 NM_001029919 0006810 // transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0006897 // endocytosis // not recorded /// 0015031 // protein transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0005905 // coated pit // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030125 // clathrin vesicle coat // inferred from electronic annotation /// 0030125 // clathrin vesicle coat // not recorded /// 0030665 // clathrin coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388908_at BI278268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278268 /DB_XREF=gi:14924946 /DB_XREF=UI-R-CY0-bxr-d-10-0-UI.s1 /CLONE=UI-R-CY0-bxr-d-10-0-UI /FEA=EST /CNT=14 /TID=Rn.3194.2 /TIER=Stack /STK=10 /UG=Rn.3194 /UG_TITLE=ESTs, Weakly similar to F Chain F, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 (R.norvegicus) BI278268 peroxisomal D3,D2-enoyl-CoA isomerase Peci 291075 NM_001006966 0006635 // fatty acid beta-oxidation // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // not recorded /// 0005777 // peroxisome // inferred from electronic annotation /// 0005782 // peroxisomal matrix // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded 0000062 // acyl-CoA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004165 // dodecenoyl-CoA delta-isomerase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0016863 // intramolecular oxidoreductase activity, transposing C=C bonds // inferred from direct assay 1388909_at AA891742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891742 /DB_XREF=gi:3018621 /DB_XREF=EST195545 /CLONE=RKIAG22 /FEA=EST /CNT=14 /TID=Rn.3785.1 /TIER=Stack /STK=10 /UG=Rn.3785 /UG_TITLE=ESTs AA891742 oxidoreductase NAD-binding domain containing 1 Oxnad1 306270 NM_001107295 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0016491 // oxidoreductase activity // inferred from electronic annotation 1388910_at BI285944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285944 /DB_XREF=gi:14940100 /DB_XREF=UI-R-CX0s-ccp-f-06-0-UI.s1 /CLONE=UI-R-CX0s-ccp-f-06-0-UI /FEA=EST /CNT=13 /TID=Rn.23961.1 /TIER=Stack /STK=10 /UG=Rn.23961 /UG_TITLE=ESTs BI285944 up-regulated gene 4 Urg4 305493 NM_001077660 0005525 // GTP binding // inferred from electronic annotation 1388911_at AI177134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177134 /DB_XREF=gi:3727772 /DB_XREF=EST220741 /CLONE=ROVCB31 /FEA=EST /CNT=13 /TID=Rn.11846.1 /TIER=Stack /STK=10 /UG=Rn.11846 /UG_TITLE=ESTs, Highly similar to DNA PRIMASE LARGE SUBUNIT (M.musculus) AI177134 primase, DNA, polypeptide 2 Prim2 301323 NM_001024762 0006260 // DNA replication // non-traceable author statement /// 0006260 // DNA replication // inferred from electronic annotation /// 0006269 // DNA replication, synthesis of RNA primer // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006464 // protein modification process // inferred from electronic annotation 0005654 // nucleoplasm // not recorded /// 0005658 // alpha DNA polymerase:primase complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003896 // DNA primase activity // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0004835 // tubulin-tyrosine ligase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 1388912_at AI237143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237143 /DB_XREF=gi:3830649 /DB_XREF=EST233705 /CLONE=ROVDP17 /FEA=EST /CNT=13 /TID=Rn.40215.1 /TIER=Stack /STK=10 /UG=Rn.40215 /UG_TITLE=ESTs AI237143 REX4, RNA exonuclease 4 homolog (S. cerevisiae) Rexo4 311826 NM_001033884 0005622 // intracellular // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation 1388913_at AA893191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893191 /DB_XREF=gi:3020070 /DB_XREF=EST196994 /CLONE=RKIBD35 /FEA=EST /CNT=13 /TID=Rn.3301.1 /TIER=Stack /STK=10 /UG=Rn.3301 /UG_TITLE=ESTs AA893191 phosphatidic acid phosphatase type 2c Ppap2c 246115 NM_139252 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008195 // phosphatidate phosphatase activity // not recorded /// 0008195 // phosphatidate phosphatase activity // non-traceable author statement /// 0008195 // phosphatidate phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042392 // sphingosine-1-phosphate phosphatase activity // not recorded 1388914_at BI288013 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288013 /DB_XREF=gi:14944178 /DB_XREF=UI-R-BT1-bni-b-09-0-UI.s2 /CLONE=UI-R-BT1-bni-b-09-0-UI /FEA=EST /CNT=12 /TID=Rn.40911.1 /TIER=Stack /STK=10 /UG=Rn.40911 /UG_TITLE=ESTs BI288013 Y box binding protein 2 Ybx2 303250 XM_001079683 /// XM_220618 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007286 // spermatid development // not recorded /// 0017148 // negative regulation of translation // not recorded /// 0048255 // mRNA stabilization // not recorded /// 0048477 // oogenesis // not recorded /// 0048599 // oocyte development // inferred from expression pattern /// 0051100 // negative regulation of binding // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005844 // polysome // not recorded /// 0030529 // ribonucleoprotein complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003729 // mRNA binding // not recorded /// 0003730 // mRNA 3'-UTR binding // not recorded /// 0008289 // lipid binding // not recorded /// 0043021 // ribonucleoprotein binding // not recorded /// 0045182 // translation regulator activity // not recorded 1388915_at BI295753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295753 /DB_XREF=gi:14959516 /DB_XREF=UI-R-DK0-cfa-b-12-0-UI.s1 /CLONE=UI-R-DK0-cfa-b-12-0-UI /FEA=EST /CNT=12 /TID=Rn.834.1 /TIER=Stack /STK=10 /UG=Rn.834 /UG_TITLE=ESTs BI295753 1388916_at BE109616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109616 /DB_XREF=gi:8501721 /DB_XREF=UI-R-BJ1-avq-b-10-0-UI.s1 /CLONE=UI-R-BJ1-avq-b-10-0-UI /FEA=EST /CNT=12 /TID=Rn.3821.1 /TIER=Stack /STK=10 /UG=Rn.3821 /UG_TITLE=ESTs BE109616 1388917_at BI279786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279786 /DB_XREF=gi:14927937 /DB_XREF=UI-R-CU0s-cbq-h-03-0-UI.s1 /CLONE=UI-R-CU0s-cbq-h-03-0-UI /FEA=EST /CNT=12 /TID=Rn.993.1 /TIER=Stack /STK=10 /UG=Rn.993 /UG_TITLE=ESTs BI279786 myosin ID Myo1d 25485 NM_012983 0006810 // transport // not recorded 0001725 // stress fiber // not recorded /// 0005737 // cytoplasm // not recorded /// 0005790 // smooth endoplasmic reticulum // inferred from direct assay /// 0005902 // microvillus // not recorded /// 0005903 // brush border // not recorded /// 0009925 // basal plasma membrane // not recorded /// 0016328 // lateral plasma membrane // not recorded /// 0016459 // myosin complex // inferred from direct assay /// 0016459 // myosin complex // inferred from electronic annotation /// 0030673 // axolemma // inferred from direct assay /// 0031941 // filamentous actin // not recorded /// 0032420 // stereocilium // not recorded /// 0045160 // myosin I complex // not recorded 0000146 // microfilament motor activity // inferred from direct assay /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0030898 // actin-dependent ATPase activity // inferred from direct assay 1388918_at BG378074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378074 /DB_XREF=gi:13302546 /DB_XREF=UI-R-CT0-bvn-e-12-0-UI.s1 /CLONE=UI-R-CT0-bvn-e-12-0-UI /FEA=EST /CNT=12 /TID=Rn.14390.1 /TIER=Stack /STK=10 /UG=Rn.14390 /UG_TITLE=ESTs BG378074 High density lipoprotein binding protein Hdlbp 64474 NM_172039 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0034364 // high-density lipoprotein particle // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388919_at AW144669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144669 /DB_XREF=gi:6164568 /DB_XREF=EST295047 /CLONE=RGICD35 /FEA=EST /CNT=12 /TID=Rn.9137.1 /TIER=Stack /STK=10 /UG=Rn.9137 /UG_TITLE=ESTs AW144669 1388920_at AI230985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230985 /DB_XREF=gi:3814865 /DB_XREF=EST227673 /CLONE=REMDD81 /FEA=EST /CNT=12 /TID=Rn.40476.2 /TIER=Stack /STK=10 /UG=Rn.40476 /LL=25644 /UG_GENE=Bmp6 /UG_TITLE=Bone morphogenetic protein 6 AI230985 1388921_at BI279587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279587 /DB_XREF=gi:14927546 /DB_XREF=UI-R-DE0-cae-c-11-0-UI.s1 /CLONE=UI-R-DE0-cae-c-11-0-UI /FEA=EST /CNT=12 /TID=Rn.24778.1 /TIER=Stack /STK=10 /UG=Rn.24778 /UG_TITLE=ESTs BI279587 1388922_at BM388677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388677 /DB_XREF=gi:18188730 /DB_XREF=UI-R-DZ0-ckm-b-18-0-UI.s1 /CLONE=UI-R-DZ0-ckm-b-18-0-UI /FEA=EST /CNT=12 /TID=Rn.8187.1 /TIER=Stack /STK=10 /UG=Rn.8187 /UG_TITLE=ESTs, Weakly similar to AIPL_RAT ARYL-HYDROCARBON INTERACTING PROTEIN-LIKE 1 (R.norvegicus) BM388677 aryl-hydrocarbon receptor-interacting protein Aip 282827 NM_172327 0006457 // protein folding // inferred from electronic annotation /// 0006626 // protein targeting to mitochondrion // not recorded /// 0006626 // protein targeting to mitochondrion // inferred from sequence or structural similarity /// 0006626 // protein targeting to mitochondrion // inferred from electronic annotation /// 0006805 // xenobiotic metabolic process // inferred from electronic annotation /// 0006805 // xenobiotic metabolic process // not recorded /// 0010738 // regulation of protein kinase A signaling cascade // inferred from direct assay /// 0022417 // protein maturation by protein folding // not recorded /// 0022417 // protein maturation by protein folding // inferred from sequence or structural similarity /// 0022417 // protein maturation by protein folding // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0051344 // negative regulation of cyclic-nucleotide phosphodiesterase activity // inferred from direct assay 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0044445 // cytosolic part // inferred from direct assay 0003712 // transcription cofactor activity // inferred from electronic annotation /// 0003712 // transcription cofactor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // not recorded /// 0051082 // unfolded protein binding // inferred from sequence or structural similarity /// 0051082 // unfolded protein binding // inferred from electronic annotation 1388923_at BG381657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381657 /DB_XREF=gi:13306129 /DB_XREF=UI-R-CT0-bud-h-04-0-UI.s1 /CLONE=UI-R-CT0-bud-h-04-0-UI /FEA=EST /CNT=12 /TID=Rn.29942.1 /TIER=Stack /STK=10 /UG=Rn.29942 /UG_TITLE=ESTs BG381657 HAUS augmin-like complex, subunit 8 Haus8 290626 NM_001024971 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0051225 // spindle assembly // not recorded /// 0051225 // spindle assembly // inferred from sequence or structural similarity /// 0051297 // centrosome organization // not recorded /// 0051297 // centrosome organization // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation 0000922 // spindle pole // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0070652 // HAUS complex // not recorded /// 0070652 // HAUS complex // inferred from sequence or structural similarity 1388924_at AA818262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818262 /DB_XREF=gi:4198773 /DB_XREF=UI-R-A0-ax-b-10-0-UI.s1 /CLONE=UI-R-A0-ax-b-10-0-UI /FEA=EST /CNT=12 /TID=Rn.2536.1 /TIER=Stack /STK=10 /UG=Rn.2536 /UG_TITLE=ESTs, Weakly similar to FCN2_RAT Ficolin 2 precursor (Collagenfibrinogen domain-containing protein 2) (Ficolin-B) (Ficolin B) (Serum lectin P35) (EBP-37) (Hucolin) (R.norvegicus) AA818262 angiopoietin-like 4 Angptl4 362850 NM_199115 0001525 // angiogenesis // inferred from electronic annotation /// 0001666 // response to hypoxia // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0019216 // regulation of lipid metabolic process // traceable author statement /// 0030154 // cell differentiation // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043086 // negative regulation of catalytic activity // traceable author statement /// 0051005 // negative regulation of lipoprotein lipase activity // not recorded /// 0051005 // negative regulation of lipoprotein lipase activity // traceable author statement /// 0051005 // negative regulation of lipoprotein lipase activity // inferred from electronic annotation /// 0051259 // protein oligomerization // traceable author statement /// 0051260 // protein homooligomerization // inferred from direct assay /// 0070328 // triglyceride homeostasis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded 0004857 // enzyme inhibitor activity // traceable author statement /// 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from electronic annotation 1388925_at AI171547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171547 /DB_XREF=gi:3711587 /DB_XREF=EST217512 /CLONE=RMUBM40 /FEA=EST /CNT=12 /TID=Rn.25099.1 /TIER=Stack /STK=10 /UG=Rn.25099 /UG_TITLE=ESTs AI171547 sirtuin (silent mating type information regulation 2 homolog) 5 (S. cerevisiae) Sirt5 306840 NM_001004256 0006342 // chromatin silencing // inferred from electronic annotation /// 0006476 // protein deacetylation // not recorded /// 0006476 // protein deacetylation // inferred from sequence or structural similarity /// 0006476 // protein deacetylation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // not recorded /// 0005758 // mitochondrial intermembrane space // inferred from sequence or structural similarity /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded /// 0005759 // mitochondrial matrix // inferred from sequence or structural similarity /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016811 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070403 // NAD binding // inferred from electronic annotation 1388926_at AI409048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409048 /DB_XREF=gi:4252552 /DB_XREF=EST237340 /CLONE=RKIDO96 /FEA=EST /CNT=12 /TID=Rn.17107.1 /TIER=Stack /STK=10 /UG=Rn.17107 /UG_TITLE=ESTs AI409048 1388927_at BE109617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109617 /DB_XREF=gi:8501722 /DB_XREF=UI-R-BJ1-avq-b-12-0-UI.s1 /CLONE=UI-R-BJ1-avq-b-12-0-UI /FEA=EST /CNT=12 /TID=Rn.9036.1 /TIER=Stack /STK=10 /UG=Rn.9036 /UG_TITLE=ESTs, Weakly similar to RAB2 RAT RAS-RELATED PROTEIN RAB-2 (R.norvegicus) BE109617 RAB, member of RAS oncogene family-like 4 Rabl4 300062 NM_001130495 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1388928_at BF399310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399310 /DB_XREF=gi:11384314 /DB_XREF=UI-R-CA1-bjb-a-08-0-UI.s1 /CLONE=UI-R-CA1-bjb-a-08-0-UI /FEA=EST /CNT=14 /TID=Rn.3981.1 /TIER=Stack /STK=10 /UG=Rn.3981 /UG_TITLE=ESTs BF399310 cofilin 2, muscle Cfl2 366624 NM_001108982 0005515 // protein binding // not recorded 1388929_at AI011716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011716 /DB_XREF=gi:3225548 /DB_XREF=EST206167 /CLONE=ROVAZ25 /FEA=EST /CNT=14 /TID=Rn.3202.1 /TIER=Stack /STK=10 /UG=Rn.3202 /UG_TITLE=ESTs AI011716 1388930_at AI171651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171651 /DB_XREF=gi:3711691 /DB_XREF=EST217624 /CLONE=RMUBN85 /FEA=EST /CNT=13 /TID=Rn.12767.1 /TIER=Stack /STK=10 /UG=Rn.12767 /UG_TITLE=ESTs AI171651 transmembrane protein 123 Tmem123 363013 NM_001014205 0070267 // oncosis // inferred from electronic annotation /// 0070267 // oncosis // not recorded 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1388931_at AA799440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799440 /DB_XREF=gi:2862395 /DB_XREF=EST188937 /CLONE=RHEAB09 /FEA=EST /CNT=13 /TID=Rn.6185.1 /TIER=Stack /STK=10 /UG=Rn.6185 /UG_TITLE=ESTs, Weakly similar to T20858 hypothetical protein F13G3.7 - Caenorhabditis elegans (C.elegans) AA799440 mitochondrial ribosomal protein L13 Mrpl13 299938 NM_001006985 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005762 // mitochondrial large ribosomal subunit // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1388932_at BI274917 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274917 /DB_XREF=gi:14886277 /DB_XREF=UI-R-CW0-bwe-f-03-0-UI.s1 /CLONE=UI-R-CW0-bwe-f-03-0-UI /FEA=EST /CNT=13 /TID=Rn.13593.1 /TIER=Stack /STK=10 /UG=Rn.13593 /UG_TITLE=ESTs, Moderately similar to LMA5_MOUSE Laminin alpha-5 chain precursor (M.musculus) BI274917 laminin, alpha 5 Lama5 140433 NM_001191609 /// XM_001060527 /// XM_215963 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001738 // morphogenesis of a polarized epithelium // inferred from electronic annotation /// 0001738 // morphogenesis of a polarized epithelium // not recorded /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0001942 // hair follicle development // inferred from electronic annotation /// 0001942 // hair follicle development // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // not recorded /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007517 // muscle organ development // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0016331 // morphogenesis of embryonic epithelium // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0034446 // substrate adhesion-dependent cell spreading // inferred from electronic annotation /// 0034446 // substrate adhesion-dependent cell spreading // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042384 // cilium assembly // inferred from electronic annotation /// 0042384 // cilium assembly // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0045995 // regulation of embryonic development // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // not recorded 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005604 // basement membrane // inferred from electronic annotation /// 0005605 // basal lamina // inferred from electronic annotation /// 0005605 // basal lamina // not recorded /// 0005606 // laminin-1 complex // inferred from electronic annotation /// 0005610 // laminin-5 complex // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0043259 // laminin-10 complex // inferred from electronic annotation /// 0043259 // laminin-10 complex // not recorded 0005102 // receptor binding // inferred from electronic annotation /// 0005178 // integrin binding // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388933_at AI233748 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233748 /DB_XREF=gi:3817628 /DB_XREF=EST230436 /CLONE=RKIDJ58 /FEA=EST /CNT=13 /TID=Rn.8858.1 /TIER=Stack /STK=10 /UG=Rn.8858 /UG_TITLE=ESTs AI233748 1388934_at BI285570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285570 /DB_XREF=gi:14939358 /DB_XREF=UI-R-CW0s-ccb-f-11-0-UI.s1 /CLONE=UI-R-CW0s-ccb-f-11-0-UI /FEA=EST /CNT=12 /TID=Rn.14968.1 /TIER=Stack /STK=10 /UG=Rn.14968 /UG_TITLE=ESTs, Weakly similar to YPD2_CAEEL HYPOTHETICAL 93.8 KD PROTEIN C05D11.2 IN CHROMOSOME III (C.elegans) BI285570 vacuolar protein sorting 16 homolog (S. cerevisiae) Vps16 296159 NM_001005541 0006886 // intracellular protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005769 // early endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005770 // late endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005884 // actin filament // not recorded /// 0030424 // axon // inferred from direct assay /// 0030897 // HOPS complex // inferred from electronic annotation /// 0030897 // HOPS complex // not recorded /// 0043025 // neuronal cell body // inferred from direct assay /// 0055037 // recycling endosome // inferred from electronic annotation /// 0055037 // recycling endosome // not recorded 0003779 // actin binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0051015 // actin filament binding // inferred from direct assay 1388935_at AI231814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231814 /DB_XREF=gi:3815694 /DB_XREF=EST228502 /CLONE=RHECO60 /FEA=EST /CNT=12 /TID=Rn.17657.1 /TIER=Stack /STK=10 /UG=Rn.17657 /UG_TITLE=ESTs AI231814 Protein phosphatase 1, regulatory (inhibitor) subunit 12B Ppp1r12b 304813 NM_001107178 1388936_at BI296340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296340 /DB_XREF=gi:14960677 /DB_XREF=UI-R-DK0-cez-c-03-0-UI.s1 /CLONE=UI-R-DK0-cez-c-03-0-UI /FEA=EST /CNT=12 /TID=Rn.8900.1 /TIER=Stack /STK=10 /UG=Rn.8900 /UG_TITLE=ESTs, Moderately similar to CADHERIN-6 PRECURSOR (R.norvegicus) BI296340 cadherin 11 Cdh11 84407 NM_053392 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388937_at BF283351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283351 /DB_XREF=gi:11214421 /DB_XREF=EST447942 /CLONE=RGIEA78 /FEA=EST /CNT=12 /TID=Rn.15990.1 /TIER=Stack /STK=10 /UG=Rn.15990 /UG_TITLE=ESTs, Highly similar to GAMETOGENESIS EXPRESSED PROTEIN GEG-154 (M.musculus) BF283351 ring finger protein 19A Rnf19a 362900 NM_001130560 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388938_at AI411387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411387 /DB_XREF=gi:4254891 /DB_XREF=EST239681 /CLONE=RKIES62 /FEA=EST /CNT=12 /TID=Rn.44078.1 /TIER=Stack /STK=10 /UG=Rn.44078 /UG_TITLE=ESTs, Highly similar to UBP5 MOUSE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5 (M.musculus) AI411387 ubiquitin specific peptidase 5 (isopeptidase T) Usp5 297593 NM_001106619 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0071108 // protein K48-linked deubiquitination // not recorded 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388939_at AA800298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800298 /DB_XREF=gi:2863253 /DB_XREF=EST189795 /CLONE=RHEAN60 /FEA=EST /CNT=12 /TID=Rn.13884.1 /TIER=Stack /STK=10 /UG=Rn.13884 /UG_TITLE=ESTs AA800298 collagen, type XV, alpha 1 Col15a1 298069 XM_001066530 /// XM_216399 0007155 // cell adhesion // inferred from electronic annotation 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1388940_at AW252115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252115 /DB_XREF=gi:6595706 /DB_XREF=UI-R-BJ0-aee-d-04-0-UI.s1 /CLONE=UI-R-BJ0-aee-d-04-0-UI /FEA=EST /CNT=12 /TID=Rn.22776.1 /TIER=Stack /STK=10 /UG=Rn.22776 /UG_TITLE=ESTs, Moderately similar to Y053_HUMAN HYPOTHETICAL PROTEIN KIAA0053 (H.sapiens) AW252115 Rho GTPase activating protein 25 Arhgap25 500246 NM_001109247 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation 1388941_at AI172403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172403 /DB_XREF=gi:3712443 /DB_XREF=EST218410 /CLONE=RMUBZ07 /FEA=EST /CNT=11 /TID=Rn.15408.1 /TIER=Stack /STK=10 /UG=Rn.15408 /UG_TITLE=ESTs AI172403 archaelysin family metallopeptidase 2 Amz2 360650 NM_001014121 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388942_at BM390129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390129 /DB_XREF=gi:18190182 /DB_XREF=UI-R-CN1-cjp-h-02-0-UI.s1 /CLONE=UI-R-CN1-cjp-h-02-0-UI /FEA=EST /CNT=11 /TID=Rn.16794.1 /TIER=Stack /STK=10 /UG=Rn.16794 /UG_TITLE=ESTs BM390129 1388943_at BI279670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279670 /DB_XREF=gi:14927706 /DB_XREF=UI-R-DE0-caf-c-10-0-UI.s1 /CLONE=UI-R-DE0-caf-c-10-0-UI /FEA=EST /CNT=11 /TID=Rn.17653.1 /TIER=Stack /STK=10 /UG=Rn.17653 /UG_TITLE=ESTs BI279670 chromatin accessibility complex 1 Chrac1 315058 NM_001134880 0005622 // intracellular // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1388944_at BE109016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109016 /DB_XREF=gi:8501121 /DB_XREF=UI-R-BS1-azc-a-06-0-UI.s1 /CLONE=UI-R-BS1-azc-a-06-0-UI /FEA=EST /CNT=11 /TID=Rn.19389.1 /TIER=Stack /STK=10 /UG=Rn.19389 /UG_TITLE=ESTs BE109016 1388945_at BM385779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385779 /DB_XREF=gi:18185832 /DB_XREF=UI-R-CN1-clx-p-05-0-UI.s1 /CLONE=UI-R-CN1-clx-p-05-0-UI /FEA=EST /CNT=11 /TID=Rn.6535.1 /TIER=Stack /STK=10 /UG=Rn.6535 /UG_TITLE=ESTs BM385779 similar to 1300014I06Rik protein RGD1311307 361238 NM_001025719 0007154 // cell communication // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1388946_at AI233763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233763 /DB_XREF=gi:3817643 /DB_XREF=EST230451 /CLONE=RKIDJ76 /FEA=EST /CNT=11 /TID=Rn.12301.1 /TIER=Stack /STK=10 /UG=Rn.12301 /UG_TITLE=ESTs AI233763 similar to hypothetical p38 protein RGD1311910 307235 NM_001107373 1388947_at BI291654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291654 /DB_XREF=gi:14951402 /DB_XREF=UI-R-DN0-ciu-n-17-0-UI.s1 /CLONE=UI-R-DN0-ciu-n-17-0-UI /FEA=EST /CNT=11 /TID=Rn.7323.1 /TIER=Stack /STK=10 /UG=Rn.7323 /UG_TITLE=ESTs, Highly similar to T43483 translation initiation factor IF-2 homolog (H.sapiens) BI291654 eukaryotic translation initiation factor 5B Eif5b 308306 NM_001110141 0006412 // translation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // non-traceable author statement /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation 1388948_at AI104759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104759 /DB_XREF=gi:3709043 /DB_XREF=EST214048 /CLONE=RHECI63 /FEA=EST /CNT=11 /TID=Rn.18719.1 /TIER=Stack /STK=10 /UG=Rn.18719 /UG_TITLE=ESTs, Weakly similar to T25416 hypothetical protein T28D6.7 - Caenorhabditis elegans (C.elegans) AI104759 StAR-related lipid transfer (START) domain containing 10 Stard10 293150 NM_001013069 1388949_at BI297693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297693 /DB_XREF=gi:14973973 /DB_XREF=UI-R-CV2-cgz-d-04-0-UI.s1 /CLONE=UI-R-CV2-cgz-d-04-0-UI /FEA=EST /CNT=11 /TID=Rn.34678.1 /TIER=Stack /STK=10 /UG=Rn.34678 /UG_TITLE=ESTs BI297693 1388950_at BM384121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384121 /DB_XREF=gi:18184174 /DB_XREF=UI-R-DZ0-cks-j-07-0-UI.s1 /CLONE=UI-R-DZ0-cks-j-07-0-UI /FEA=EST /CNT=10 /TID=Rn.39126.1 /TIER=Stack /STK=10 /UG=Rn.39126 /UG_TITLE=ESTs, Highly similar to A53330 collagen alpha 2(IX) chain precursor - mouse (M.musculus) BM384121 collagen, type IX, alpha 2 Col9a2 362584 NM_001108675 0005594 // collagen type IX // not recorded 1388951_at BI294789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294789 /DB_XREF=gi:14957586 /DB_XREF=UI-R-DK0-cec-b-08-0-UI.s1 /CLONE=UI-R-DK0-cec-b-08-0-UI /FEA=EST /CNT=10 /TID=Rn.38593.1 /TIER=Stack /STK=10 /UG=Rn.38593 /UG_TITLE=ESTs, Moderately similar to A48205 All-1 protein +GTE form - mouse (M.musculus) BI294789 myeloid/lymphoid or mixed-lineage leukemia 4 Mll4 361543 XM_002728730 /// XM_341829 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388952_at BI277039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277039 /DB_XREF=gi:14922531 /DB_XREF=UI-R-CY0-bxp-g-03-0-UI.s1 /CLONE=UI-R-CY0-bxp-g-03-0-UI /FEA=EST /CNT=10 /TID=Rn.20446.1 /TIER=Stack /STK=10 /UG=Rn.20446 /UG_TITLE=ESTs BI277039 dehydrogenase/reductase (SDR family) member 11 Dhrs11 360583 NM_001014119 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1388953_at AA892598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892598 /DB_XREF=gi:4132181 /DB_XREF=EST196401 /CLONE=RKIAU41 /FEA=EST /CNT=10 /TID=Rn.4110.1 /TIER=Stack /STK=10 /UG=Rn.4110 /UG_TITLE=ESTs AA892598 guanine nucleotide binding protein-like 3 (nucleolar) Gnl3 290556 NM_175580 0008283 // cell proliferation // inferred from direct assay /// 0042127 // regulation of cell proliferation // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from mutant phenotype /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1388954_at BI295749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295749 /DB_XREF=gi:14959508 /DB_XREF=UI-R-DK0-cfa-b-07-0-UI.s1 /CLONE=UI-R-DK0-cfa-b-07-0-UI /FEA=EST /CNT=10 /TID=Rn.40316.1 /TIER=Stack /STK=10 /UG=Rn.40316 /UG_TITLE=ESTs BI295749 similar to hypothetical protein MGC25461 RGD1306717 311257 NM_001107756 0008152 // metabolic process // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation 1388955_at BE110691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110691 /DB_XREF=gi:8502796 /DB_XREF=UI-R-BJ1-avu-h-08-0-UI.s1 /CLONE=UI-R-BJ1-avu-h-08-0-UI /FEA=EST /CNT=10 /TID=Rn.16016.1 /TIER=Stack /STK=10 /UG=Rn.16016 /UG_TITLE=ESTs BE110691 EH-domain containing 2 Ehd2 361512 NM_001024897 0006897 // endocytosis // inferred from electronic annotation /// 0006897 // endocytosis // not recorded /// 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation /// 0030866 // cortical actin cytoskeleton organization // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded 1388956_at BI285945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285945 /DB_XREF=gi:14940102 /DB_XREF=UI-R-CX0s-ccp-f-07-0-UI.s1 /CLONE=UI-R-CX0s-ccp-f-07-0-UI /FEA=EST /CNT=10 /TID=Rn.19170.1 /TIER=Stack /STK=10 /UG=Rn.19170 /UG_TITLE=ESTs, Moderately similar to T46411 hypothetical protein DKFZp434M1922.1 (H.sapiens) BI285945 exportin 5 Xpo5 363194 NM_001108789 0005488 // binding // inferred from electronic annotation 1388957_at AA891790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891790 /DB_XREF=gi:3018669 /DB_XREF=EST195593 /CLONE=RKIAG82 /FEA=EST /CNT=10 /TID=Rn.7479.1 /TIER=Stack /STK=10 /UG=Rn.7479 /UG_TITLE=ESTs AA891790 1388958_a_at AA799760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799760 /DB_XREF=gi:2862715 /DB_XREF=EST189257 /CLONE=RHEAF03 /FEA=EST /CNT=10 /TID=Rn.1314.2 /TIER=Stack /STK=10 /UG=Rn.1314 /LL=25139 /UG_GENE=Glut4 /UG_TITLE=solute carrier family 2 (facilitated glucose transporter), member 4 AA799760 solute carrier family 2 (facilitated glucose transporter), member 4 Slc2a4 25139 NM_012751 0006810 // transport // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0015758 // glucose transport // inferred from direct assay /// 0015758 // glucose transport // inferred from mutant phenotype /// 0015758 // glucose transport // not recorded /// 0015758 // glucose transport // inferred from electronic annotation /// 0035428 // hexose transmembrane transport // not recorded /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042593 // glucose homeostasis // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0000299 // integral to membrane of membrane fraction // inferred from electronic annotation /// 0000299 // integral to membrane of membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from direct assay /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005771 // multivesicular body // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005905 // coated pit // inferred from direct assay /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0012506 // vesicle membrane // not recorded /// 0012506 // vesicle membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // not recorded /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0030140 // trans-Golgi network transport vesicle // inferred from electronic annotation /// 0030140 // trans-Golgi network transport vesicle // not recorded /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // not recorded /// 0031982 // vesicle // inferred from direct assay /// 0032593 // insulin-responsive compartment // inferred from direct assay /// 0042383 // sarcolemma // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // not recorded 0005215 // transporter activity // inferred from electronic annotation /// 0005355 // glucose transmembrane transporter activity // inferred from direct assay /// 0005355 // glucose transmembrane transporter activity // inferred from mutant phenotype /// 0005355 // glucose transmembrane transporter activity // not recorded /// 0005355 // glucose transmembrane transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0022891 // substrate-specific transmembrane transporter activity // inferred from electronic annotation /// 0055056 // D-glucose transmembrane transporter activity // inferred from direct assay 1388959_at BI297049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297049 /DB_XREF=gi:14962076 /DB_XREF=UI-R-DK0-cgk-f-07-0-UI.s1 /CLONE=UI-R-DK0-cgk-f-07-0-UI /FEA=EST /CNT=10 /TID=Rn.30517.1 /TIER=Stack /STK=10 /UG=Rn.30517 /UG_TITLE=ESTs BI297049 Tubulin tyrosine ligase-like family, member 12 Ttll12 300105 NM_001135922 0006464 // protein modification process // inferred from electronic annotation 0004835 // tubulin-tyrosine ligase activity // inferred from electronic annotation 1388960_at AI412958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412958 /DB_XREF=gi:4256462 /DB_XREF=EST241258 /CLONE=RBRED24 /FEA=EST /CNT=10 /TID=Rn.12025.1 /TIER=Stack /STK=10 /UG=Rn.12025 /UG_TITLE=ESTs, Moderately similar to IPYR_HUMAN INORGANIC PYROPHOSPHATASE (H.sapiens) AI412958 pyrophosphatase (inorganic) 1 Ppa1 294504 NM_001100834 0006796 // phosphate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0071344 // diphosphate metabolic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004427 // inorganic diphosphatase activity // inferred from electronic annotation /// 0016462 // pyrophosphatase activity // not recorded /// 0016462 // pyrophosphatase activity // inferred from electronic annotation 1388961_at BF407194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407194 /DB_XREF=gi:11395169 /DB_XREF=UI-R-BJ2-bqw-g-06-0-UI.s1 /CLONE=UI-R-BJ2-bqw-g-06-0-UI /FEA=EST /CNT=10 /TID=Rn.39792.1 /TIER=Stack /STK=10 /UG=Rn.39792 /UG_TITLE=ESTs, Highly similar to AF140691 1 melusin (M.musculus) BF407194 integrin beta 1 binding protein 2 Itgb1bp2 317258 NM_001108245 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation 0030018 // Z disc // not recorded 0005178 // integrin binding // inferred from physical interaction /// 0005509 // calcium ion binding // not recorded /// 0008270 // zinc ion binding // not recorded 1388962_at BI294621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294621 /DB_XREF=gi:14957253 /DB_XREF=UI-R-DK0-cem-f-12-0-UI.s1 /CLONE=UI-R-DK0-cem-f-12-0-UI /FEA=EST /CNT=10 /TID=Rn.11826.1 /TIER=Stack /STK=10 /UG=Rn.11826 /UG_TITLE=ESTs BI294621 polycomb group ring finger 2 Pcgf2 287662 NM_001105836 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0016573 // histone acetylation // inferred from electronic annotation /// 0016573 // histone acetylation // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048706 // embryonic skeletal system development // not recorded /// 0048706 // embryonic skeletal system development // inferred from electronic annotation 0001739 // sex chromatin // inferred from electronic annotation /// 0001739 // sex chromatin // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016604 // nuclear body // inferred from electronic annotation /// 0016604 // nuclear body // not recorded /// 0031519 // PcG protein complex // inferred from electronic annotation /// 0031519 // PcG protein complex // not recorded 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388963_at AI102087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102087 /DB_XREF=gi:3706920 /DB_XREF=EST211376 /CLONE=RBRBY72 /FEA=EST /CNT=10 /TID=Rn.28132.1 /TIER=Stack /STK=10 /UG=Rn.28132 /UG_TITLE=ESTs AI102087 astrotactin 1 Astn1 304900 NM_001170603 /// XM_001068691 /// XM_002724880 /// XM_222785 0007626 // locomotory behavior // not recorded /// 0016337 // cell-cell adhesion // not recorded /// 0016477 // cell migration // not recorded 1388964_at AI232289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232289 /DB_XREF=gi:3816169 /DB_XREF=EST228977 /CLONE=RKIBZ79 /FEA=EST /CNT=10 /TID=Rn.13177.2 /TIER=Stack /STK=10 /UG=Rn.13177 /UG_TITLE=ESTs, Weakly similar to PMC1_MOUSE POLYMYOSITISSCLERODERMA AUTOANTIGEN 1 (AUTOANTIGEN PMSCL 1) (POLYMYOSITISSCLERODERMA AUTOANTIGEN 75 KDA) (PMSCL-75) (P75 POLYMYOSITIS-SCLERODERMA OVERLAP SYNDROME ASSOCIATED AUTOANTIGEN) (M.musculus) AI232289 family with sequence similarity 48, member A Fam48a 361946 NM_001014170 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007369 // gastrulation // inferred from electronic annotation 0005515 // protein binding // not recorded 1388965_at AI144583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144583 /DB_XREF=gi:3666382 /DB_XREF=UI-R-BT0-pn-c-03-0-UI.s1 /CLONE=UI-R-BT0-pn-c-03-0-UI /FEA=EST /CNT=10 /TID=Rn.27611.1 /TIER=Stack /STK=10 /UG=Rn.27611 /UG_TITLE=ESTs AI144583 protein phosphatase 2, regulatory subunit B', epsilon isoform Ppp2r5e 299147 NM_001106740 0007165 // signal transduction // inferred from electronic annotation 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008601 // protein phosphatase type 2A regulator activity // inferred from electronic annotation 1388966_at BM388250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388250 /DB_XREF=gi:18188303 /DB_XREF=UI-R-DM1-cjz-i-06-0-UI.s1 /CLONE=UI-R-DM1-cjz-i-06-0-UI /FEA=EST /CNT=10 /TID=Rn.7825.1 /TIER=Stack /STK=10 /UG=Rn.7825 /UG_TITLE=ESTs BM388250 1388967_at AI012945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012945 /DB_XREF=gi:3226777 /DB_XREF=EST207396 /CLONE=RSPBA21 /FEA=EST /CNT=10 /TID=Rn.9231.1 /TIER=Stack /STK=10 /UG=Rn.9231 /UG_TITLE=ESTs AI012945 Transcription factor E3 Tcfe3 317376 XM_002727531 /// XM_002730205 /// XM_228760 0006959 // humoral immune response // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0045670 // regulation of osteoclast differentiation // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1388968_at BF402642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402642 /DB_XREF=gi:11390617 /DB_XREF=UI-R-CA0-bhm-h-05-0-UI.s1 /CLONE=UI-R-CA0-bhm-h-05-0-UI /FEA=EST /CNT=10 /TID=Rn.19156.1 /TIER=Stack /STK=10 /UG=Rn.19156 /UG_TITLE=ESTs BF402642 metallophosphoesterase domain containing 1 Mpped1 362971 NM_001130569 0016787 // hydrolase activity // inferred from electronic annotation 1388969_at BM387366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387366 /DB_XREF=gi:18187419 /DB_XREF=UI-R-CN1-cjj-g-11-0-UI.s1 /CLONE=UI-R-CN1-cjj-g-11-0-UI /FEA=EST /CNT=10 /TID=Rn.23796.1 /TIER=Stack /STK=10 /UG=Rn.23796 /UG_TITLE=ESTs BM387366 acyl-CoA synthetase family member 3 Acsf3 498962 XM_001079424 /// XM_574249 0006631 // fatty acid metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0016878 // acid-thiol ligase activity // not recorded 1388970_at AA848597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848597 /DB_XREF=gi:2936137 /DB_XREF=EST191357 /CLONE=RLUAC26 /FEA=EST /CNT=10 /TID=Rn.22806.1 /TIER=Stack /STK=10 /UG=Rn.22806 /UG_TITLE=ESTs AA848597 Ras interacting protein 1 Rasip1 292912 NM_001106261 0007165 // signal transduction // inferred from electronic annotation 1388971_s_at BI282568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282568 /DB_XREF=gi:14933467 /DB_XREF=UI-R-DD0-bzy-e-09-0-UI.s1 /CLONE=UI-R-DD0-bzy-e-09-0-UI /FEA=EST /CNT=10 /TID=Rn.15442.1 /TIER=Stack /STK=10 /UG=Rn.15442 /UG_TITLE=ESTs BI282568 keratinocyte differentiation associated protein Krtdap 65186 0008544 // epidermis development // inferred from direct assay /// 0030154 // cell differentiation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 1388972_at BF386649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386649 /DB_XREF=gi:11371473 /DB_XREF=UI-R-CA1-bbf-h-05-0-UI.s1 /CLONE=UI-R-CA1-bbf-h-05-0-UI /FEA=EST /CNT=10 /TID=Rn.45686.2 /TIER=Stack /STK=10 /UG=Rn.45686 /LL=113912 /UG_GENE=Rtn4r /UG_TITLE=reticulon 4 receptor BF386649 reticulon 4 receptor Rtn4r 113912 NM_053613 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0050770 // regulation of axonogenesis // not recorded /// 0050771 // negative regulation of axonogenesis // not recorded /// 0050771 // negative regulation of axonogenesis // traceable author statement 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0004872 // receptor activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388973_at BM388861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388861 /DB_XREF=gi:18188914 /DB_XREF=UI-R-DZ0-ckn-i-22-0-UI.s1 /CLONE=UI-R-DZ0-ckn-i-22-0-UI /FEA=EST /CNT=40 /TID=Rn.21481.1 /TIER=Stack /STK=9 /UG=Rn.21481 /UG_TITLE=ESTs BM388861 collagen, type IX, alpha 1 Col9a1 305104 NM_001100842 /// XM_001069096 /// XM_223124 0001894 // tissue homeostasis // inferred from electronic annotation /// 0001894 // tissue homeostasis // not recorded /// 0002062 // chondrocyte differentiation // inferred from expression pattern /// 0003417 // growth plate cartilage development // inferred from electronic annotation /// 0003417 // growth plate cartilage development // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0051216 // cartilage development // not recorded /// 0051216 // cartilage development // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005594 // collagen type IX // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388974_at AI101527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101527 /DB_XREF=gi:4134013 /DB_XREF=EST210816 /CLONE=RBRBR71 /FEA=EST /CNT=26 /TID=Rn.240.1 /TIER=Stack /STK=9 /UG=Rn.240 /UG_TITLE=ESTs, Highly similar to S01700 signal recognition particle 19K protein (H.sapiens) AI101527 signal recognition particle 19 Srp19 291685 NM_001106157 0006614 // SRP-dependent cotranslational protein targeting to membrane // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005786 // signal recognition particle, endoplasmic reticulum targeting // inferred from electronic annotation /// 0005786 // signal recognition particle, endoplasmic reticulum targeting // not recorded /// 0048500 // signal recognition particle // inferred from electronic annotation 0008312 // 7S RNA binding // inferred from electronic annotation /// 0008312 // 7S RNA binding // not recorded 1388975_at AA923982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA923982 /DB_XREF=gi:4234074 /DB_XREF=UI-R-A1-dq-f-06-0-UI.s1 /CLONE=UI-R-A1-dq-f-06-0-UI /FEA=EST /CNT=32 /TID=Rn.8113.1 /TIER=Stack /STK=9 /UG=Rn.8113 /UG_TITLE=ESTs, Moderately similar to T12480 hypothetical protein DKFZp564P2062.1 (H.sapiens) AA923982 succinate-CoA ligase, ADP-forming, beta subunit Sucla2 361071 NM_001108387 0006099 // tricarboxylic acid cycle // inferred from direct assay /// 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006104 // succinyl-CoA metabolic process // inferred from direct assay /// 0006105 // succinate metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004775 // succinate-CoA ligase (ADP-forming) activity // inferred from direct assay /// 0004775 // succinate-CoA ligase (ADP-forming) activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1388976_at AI178272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178272 /DB_XREF=gi:3728910 /DB_XREF=EST221940 /CLONE=RPLCO40 /FEA=EST /CNT=19 /TID=Rn.13809.1 /TIER=Stack /STK=9 /UG=Rn.13809 /UG_TITLE=ESTs, Weakly similar to S51973 hypothetical protein YAL046c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AI178272 bolA homolog 3 (E. coli) Bola3 297388 NM_001106601 1388977_at BM390401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390401 /DB_XREF=gi:18190454 /DB_XREF=UI-R-CN1-cjq-l-01-0-UI.s1 /CLONE=UI-R-CN1-cjq-l-01-0-UI /FEA=EST /CNT=19 /TID=Rn.2636.1 /TIER=Stack /STK=9 /UG=Rn.2636 /UG_TITLE=ESTs BM390401 choline/ethanolamine phosphotransferase 1 Cept1 310773 NM_001007699 0008654 // phospholipid biosynthetic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0004142 // diacylglycerol cholinephosphotransferase activity // inferred from electronic annotation /// 0004307 // ethanolaminephosphotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016780 // phosphotransferase activity, for other substituted phosphate groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388978_at BF283704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283704 /DB_XREF=gi:11214774 /DB_XREF=EST448295 /CLONE=RGIEF69 /FEA=EST /CNT=31 /TID=Rn.3971.1 /TIER=Stack /STK=9 /UG=Rn.3971 /UG_TITLE=ESTs BF283704 1388979_at BM390864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390864 /DB_XREF=gi:18190917 /DB_XREF=UI-R-CN1-cjp-a-23-0-UI.s1 /CLONE=UI-R-CN1-cjp-a-23-0-UI /FEA=EST /CNT=19 /TID=Rn.3900.1 /TIER=Stack /STK=9 /UG=Rn.3900 /UG_TITLE=ESTs BM390864 survival motor neuron domain containing 1 Smndc1 287768 NM_001025400 /// NM_001035234 0006397 // mRNA processing // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0015030 // Cajal body // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388980_at BG381728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381728 /DB_XREF=gi:13306200 /DB_XREF=UI-R-CT0-bue-g-05-0-UI.s1 /CLONE=UI-R-CT0-bue-g-05-0-UI /FEA=EST /CNT=18 /TID=Rn.3816.1 /TIER=Stack /STK=9 /UG=Rn.3816 /UG_TITLE=ESTs BG381728 RhoA activator C11orf59 homolog p18 308869 NM_199102 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1388981_at AI104127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104127 /DB_XREF=gi:3708533 /DB_XREF=EST213416 /CLONE=RHEBX60 /FEA=EST /CNT=17 /TID=Rn.12928.1 /TIER=Stack /STK=9 /UG=Rn.12928 /UG_TITLE=ESTs AI104127 similar to ADP-ribosylation factor GTPase-activating protein 3 (ARF GAP 3) LOC503165 503165 NM_001044273 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388982_at BM389066 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389066 /DB_XREF=gi:18189119 /DB_XREF=UI-R-DZ0-cko-j-23-0-UI.s1 /CLONE=UI-R-DZ0-cko-j-23-0-UI /FEA=EST /CNT=23 /TID=Rn.19979.1 /TIER=Stack /STK=9 /UG=Rn.19979 /UG_TITLE=ESTs BM389066 1388983_at BI296386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296386 /DB_XREF=gi:14960759 /DB_XREF=UI-R-DK0-cez-g-06-0-UI.s1 /CLONE=UI-R-DK0-cez-g-06-0-UI /FEA=EST /CNT=18 /TID=Rn.8350.1 /TIER=Stack /STK=9 /UG=Rn.8350 /UG_TITLE=ESTs, Weakly similar to AR20_CAEEL PROBABLE ARP23 COMPLEX 20 KDA SUBUNIT (P20-ARC) (C.elegans) BI296386 similar to hypothetical protein RGD1305045 296050 NM_001106496 0030246 // carbohydrate binding // inferred from electronic annotation 1388984_at BF397989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397989 /DB_XREF=gi:11382969 /DB_XREF=UI-R-BS2-beg-a-01-0-UI.s1 /CLONE=UI-R-BS2-beg-a-01-0-UI /FEA=EST /CNT=17 /TID=Rn.37546.1 /TIER=Stack /STK=9 /UG=Rn.37546 /UG_TITLE=ESTs, Weakly similar to RNA polymerase I (127 kDa subunit) (Rattus norvegicus) (R.norvegicus) BF397989 polymerase (RNA) III (DNA directed) polypeptide B Polr3b 362858 NM_001191878 /// XM_002726889 /// XM_343188 0006350 // transcription // inferred from electronic annotation /// 0032728 // positive regulation of interferon-beta production // not recorded /// 0045089 // positive regulation of innate immune response // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0032549 // ribonucleoside binding // inferred from electronic annotation 1388985_at AI012869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012869 /DB_XREF=gi:3226701 /DB_XREF=EST207320 /CLONE=RPLBC63 /FEA=EST /CNT=22 /TID=Rn.25004.1 /TIER=Stack /STK=9 /UG=Rn.25004 /UG_TITLE=ESTs AI012869 hypothetical LOC100361467 LOC100361467 100361467 XR_086350 1388986_at AI598339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598339 /DB_XREF=gi:4607387 /DB_XREF=EST250042 /CLONE=REMDO83 /FEA=EST /CNT=18 /TID=Rn.7947.1 /TIER=Stack /STK=9 /UG=Rn.7947 /UG_TITLE=ESTs AI598339 1388987_at BF283646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283646 /DB_XREF=gi:11214716 /DB_XREF=EST448237 /CLONE=RGIEF02 /FEA=EST /CNT=15 /TID=Rn.12321.2 /TIER=Stack /STK=9 /UG=Rn.12321 /UG_TITLE=ESTs, Weakly similar to FAS RAT FATTY ACID SYNTHASE (R.norvegicus) BF283646 similar to expressed sequence AA960436 RGD1305215 307643 NM_001014013 1388988_at AI175070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175070 /DB_XREF=gi:3725708 /DB_XREF=EST218588 /CLONE=RMUCC04 /FEA=EST /CNT=15 /TID=Rn.2080.1 /TIER=Stack /STK=9 /UG=Rn.2080 /UG_TITLE=ESTs AI175070 abhydrolase domain containing 14b Abhd14b 300983 NM_001007664 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation 1388989_at BI302675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302675 /DB_XREF=gi:14978955 /DB_XREF=UI-R-DO0-cix-h-06-0-UI.s1 /CLONE=UI-R-DO0-cix-h-06-0-UI /FEA=EST /CNT=15 /TID=Rn.14868.1 /TIER=Stack /STK=9 /UG=Rn.14868 /UG_TITLE=ESTs, Moderately similar to RL22 RAT 60S RIBOSOMAL PROTEIN L22 (R.norvegicus) BI302675 ribosomal protein L22 like 1 Rpl22l1 361923 NM_001108548 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1388990_at AA924622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924622 /DB_XREF=gi:4235813 /DB_XREF=UI-R-A1-ea-h-11-0-UI.s1 /CLONE=UI-R-A1-ea-h-11-0-UI /FEA=EST /CNT=16 /TID=Rn.20901.1 /TIER=Stack /STK=9 /UG=Rn.20901 /UG_TITLE=ESTs AA924622 Mki67 (FHA domain) interacting nucleolar phosphoprotein Mki67ip 246042 NM_139186 0000794 // condensed nuclear chromosome // inferred from electronic annotation /// 0000794 // condensed nuclear chromosome // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1388991_at AA892491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892491 /DB_XREF=gi:3019370 /DB_XREF=EST196294 /CLONE=RKIAS10 /FEA=EST /CNT=15 /TID=Rn.18006.1 /TIER=Stack /STK=9 /UG=Rn.18006 /UG_TITLE=ESTs AA892491 SEC14 and spectrin domains 1 Sestd1 295678 NM_001134514 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // inferred from electronic annotation /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded 0034704 // calcium channel complex // inferred from electronic annotation /// 0034704 // calcium channel complex // not recorded 0001786 // phosphatidylserine binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005545 // phosphatidylinositol binding // not recorded /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from electronic annotation /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // not recorded /// 0010314 // phosphatidylinositol-5-phosphate binding // inferred from electronic annotation /// 0010314 // phosphatidylinositol-5-phosphate binding // not recorded /// 0031210 // phosphatidylcholine binding // not recorded /// 0032266 // phosphatidylinositol-3-phosphate binding // inferred from electronic annotation /// 0032266 // phosphatidylinositol-3-phosphate binding // not recorded /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // inferred from electronic annotation /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // not recorded /// 0070273 // phosphatidylinositol-4-phosphate binding // inferred from electronic annotation /// 0070273 // phosphatidylinositol-4-phosphate binding // not recorded /// 0070300 // phosphatidic acid binding // inferred from electronic annotation /// 0070300 // phosphatidic acid binding // not recorded /// 0080025 // phosphatidylinositol-3,5-bisphosphate binding // inferred from electronic annotation /// 0080025 // phosphatidylinositol-3,5-bisphosphate binding // not recorded 1388992_at AI169305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169305 /DB_XREF=gi:4134382 /DB_XREF=EST215140 /CLONE=RKIBP95 /FEA=EST /CNT=15 /TID=Rn.8281.1 /TIER=Stack /STK=9 /UG=Rn.8281 /UG_TITLE=ESTs AI169305 E1A binding protein p400 Ep400 304569 NM_001107149 0043967 // histone H4 acetylation // not recorded /// 0043968 // histone H2A acetylation // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0035267 // NuA4 histone acetyltransferase complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1388993_at AI179991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179991 /DB_XREF=gi:3730629 /DB_XREF=EST223722 /CLONE=RSPCO61 /FEA=EST /CNT=14 /TID=Rn.14904.1 /TIER=Stack /STK=9 /UG=Rn.14904 /UG_TITLE=ESTs AI179991 ring finger protein 34 Rnf34 282845 NM_001004075 0006915 // apoptosis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388994_at AW917849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917849 /DB_XREF=gi:8083610 /DB_XREF=EST349153 /CLONE=RGIEJ40 /FEA=EST /CNT=14 /TID=Rn.2740.1 /TIER=Stack /STK=9 /UG=Rn.2740 /UG_TITLE=ESTs AW917849 frizzled homolog 6 (Drosophila) Fzd6 282581 NM_001130536 0001736 // establishment of planar polarity // inferred from electronic annotation /// 0001736 // establishment of planar polarity // not recorded /// 0001843 // neural tube closure // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0035567 // non-canonical Wnt receptor signaling pathway // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016327 // apicolateral plasma membrane // inferred from electronic annotation /// 0016327 // apicolateral plasma membrane // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded 0005515 // protein binding // not recorded /// 0042813 // Wnt receptor activity // not recorded 1388995_at BF407666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407666 /DB_XREF=gi:11395641 /DB_XREF=UI-R-BJ2-bqv-a-02-0-UI.s1 /CLONE=UI-R-BJ2-bqv-a-02-0-UI /FEA=EST /CNT=14 /TID=Rn.34945.1 /TIER=Stack /STK=9 /UG=Rn.34945 /UG_TITLE=ESTs BF407666 ring finger protein 14 Rnf14 619577 NM_001034995 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1388996_at AI406527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406527 /DB_XREF=gi:4250031 /DB_XREF=EST234813 /CLONE=RBRDL28 /FEA=EST /CNT=25 /TID=Rn.7319.1 /TIER=Stack /STK=9 /UG=Rn.7319 /UG_TITLE=ESTs AI406527 1388997_at BG380819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380819 /DB_XREF=gi:13305291 /DB_XREF=UI-R-CT0-bub-g-07-0-UI.s1 /CLONE=UI-R-CT0-bub-g-07-0-UI /FEA=EST /CNT=18 /TID=Rn.8120.1 /TIER=Stack /STK=9 /UG=Rn.8120 /UG_TITLE=ESTs BG380819 ADP-ribosylation factor 3 Arf3 140940 NM_080904 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1388998_at AW522835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522835 /DB_XREF=gi:7165220 /DB_XREF=UI-R-BO0-ahn-c-10-0-UI.s1 /CLONE=UI-R-BO0-ahn-c-10-0-UI /FEA=EST /CNT=16 /TID=Rn.9618.1 /TIER=Stack /STK=9 /UG=Rn.9618 /UG_TITLE=ESTs, Weakly similar to VIL1 MOUSE VILLIN (M.musculus) AW522835 erythrocyte protein band 4.9 Epb4.9 361069 NM_001108385 0007010 // cytoskeleton organization // inferred from electronic annotation 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // not recorded /// 0030863 // cortical cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation 1388999_at BF397907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397907 /DB_XREF=gi:11382892 /DB_XREF=UI-R-BS2-bef-a-09-0-UI.s1 /CLONE=UI-R-BS2-bef-a-09-0-UI /FEA=EST /CNT=16 /TID=Rn.9341.1 /TIER=Stack /STK=9 /UG=Rn.9341 /UG_TITLE=ESTs BF397907 1389000_at AA964998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964998 /DB_XREF=gi:4279872 /DB_XREF=UI-R-C0-gr-f-06-0-UI.s1 /CLONE=UI-R-C0-gr-f-06-0-UI /FEA=EST /CNT=16 /TID=Rn.11516.1 /TIER=Stack /STK=9 /UG=Rn.11516 /UG_TITLE=ESTs AA964998 similar to jumonji domain containing 1B LOC682469 682469 XM_001061636 1389001_at AW433944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433944 /DB_XREF=gi:6965251 /DB_XREF=UI-R-BJ0p-afn-d-07-0-UI.s1 /CLONE=UI-R-BJ0p-afn-d-07-0-UI /FEA=EST /CNT=15 /TID=Rn.8372.1 /TIER=Stack /STK=9 /UG=Rn.8372 /UG_TITLE=ESTs AW433944 1389002_at BI283756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283756 /DB_XREF=gi:14935813 /DB_XREF=UI-R-CW0s-cch-d-02-0-UI.s1 /CLONE=UI-R-CW0s-cch-d-02-0-UI /FEA=EST /CNT=14 /TID=Rn.6674.1 /TIER=Stack /STK=9 /UG=Rn.6674 /UG_TITLE=ESTs, Highly similar to TALIN (M.musculus) BI283756 talin 1 Tln1 313494 NM_001039025 0006936 // muscle contraction // not recorded /// 0007016 // cytoskeletal anchoring at plasma membrane // inferred from electronic annotation /// 0007044 // cell-substrate junction assembly // not recorded /// 0007044 // cell-substrate junction assembly // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0030866 // cortical actin cytoskeleton organization // not recorded /// 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0001726 // ruffle // inferred from sequence or structural similarity /// 0005576 // extracellular region // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from sequence or structural similarity /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005178 // integrin binding // inferred from physical interaction /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017166 // vinculin binding // not recorded /// 0017166 // vinculin binding // inferred from electronic annotation /// 0030274 // LIM domain binding // not recorded /// 0030274 // LIM domain binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1389003_at BI282008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282008 /DB_XREF=gi:14932332 /DB_XREF=UI-R-CU0s-cbv-d-01-0-UI.s1 /CLONE=UI-R-CU0s-cbv-d-01-0-UI /FEA=EST /CNT=14 /TID=Rn.24591.1 /TIER=Stack /STK=9 /UG=Rn.24591 /UG_TITLE=ESTs BI282008 Rho-related BTB domain containing 3 Rhobtb3 309922 NM_001107645 0042147 // retrograde transport, endosome to Golgi // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0017137 // Rab GTPase binding // not recorded 1389004_at BG668333 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668333 /DB_XREF=gi:13890255 /DB_XREF=DRACRA03 /CLONE=DRACRA03 /FEA=EST /CNT=14 /TID=Rn.22861.1 /TIER=Stack /STK=9 /UG=Rn.22861 /UG_TITLE=ESTs, Weakly similar to Y063_HUMAN HYPOTHETICAL PROTEIN KIAA0063 (H.sapiens) BG668333 Josephin domain containing 2 Josd2 292876 NM_001106256 1389005_at BI282843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282843 /DB_XREF=gi:14934010 /DB_XREF=UI-R-CW0s-ccc-a-09-0-UI.s1 /CLONE=UI-R-CW0s-ccc-a-09-0-UI /FEA=EST /CNT=13 /TID=Rn.9337.1 /TIER=Stack /STK=9 /UG=Rn.9337 /UG_TITLE=ESTs, Moderately similar to T46275 hypothetical protein DKFZp564L0678.1 (H.sapiens) BI282843 inositol hexakisphosphate kinase 2 Ip6k2 59268 NM_021660 0006817 // phosphate transport // inferred from direct assay /// 0030308 // negative regulation of cell growth // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0046854 // phosphoinositide phosphorylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004428 // inositol or phosphatidylinositol kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008440 // inositol trisphosphate 3-kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1389006_at AI170394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170394 /DB_XREF=gi:3710434 /DB_XREF=EST216320 /CLONE=RLUCH76 /FEA=EST /CNT=13 /TID=Rn.4301.1 /TIER=Stack /STK=9 /UG=Rn.4301 /UG_TITLE=ESTs AI170394 1389007_at AI231799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231799 /DB_XREF=gi:4135671 /DB_XREF=EST228487 /CLONE=RHECO42 /FEA=EST /CNT=13 /TID=Rn.8399.1 /TIER=Stack /STK=9 /UG=Rn.8399 /UG_TITLE=ESTs, Moderately similar to I68673 gene X123 protein (H.sapiens) AI231799 family with sequence similarity 189, member A2 Fam189a2 309415 XM_001078764 /// XM_219909 0016021 // integral to membrane // inferred from electronic annotation 1389008_at AI409218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409218 /DB_XREF=gi:4252722 /DB_XREF=EST237510 /CLONE=RKIDN64 /FEA=EST /CNT=13 /TID=Rn.7582.1 /TIER=Stack /STK=9 /UG=Rn.7582 /UG_TITLE=ESTs AI409218 1389009_at BF418778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418778 /DB_XREF=gi:11406767 /DB_XREF=UI-R-BJ2-bql-h-04-0-UI.s1 /CLONE=UI-R-BJ2-bql-h-04-0-UI /FEA=EST /CNT=13 /TID=Rn.12684.1 /TIER=Stack /STK=9 /UG=Rn.12684 /UG_TITLE=ESTs BF418778 arginine/serine-rich coiled-coil 1 Rsrc1 361956 NM_001014172 0000380 // alternative nuclear mRNA splicing, via spliceosome // not recorded /// 0000398 // nuclear mRNA splicing, via spliceosome // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // not recorded /// 0006913 // nucleocytoplasmic transport // not recorded /// 0006913 // nucleocytoplasmic transport // inferred from sequence or structural similarity /// 0008380 // RNA splicing // not recorded /// 0046677 // response to antibiotic // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0016607 // nuclear speck // not recorded /// 0016607 // nuclear speck // inferred from sequence or structural similarity 0005515 // protein binding // not recorded 1389010_at AW918009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918009 /DB_XREF=gi:8083775 /DB_XREF=EST349313 /CLONE=RGIEL18 /FEA=EST /CNT=13 /TID=Rn.2413.1 /TIER=Stack /STK=9 /UG=Rn.2413 /UG_TITLE=ESTs, Highly similar to LEUKOTRIENE A-4 HYDROLASE (R.norvegicus) AW918009 leukotriene A4 hydrolase Lta4h 299732 NM_001030031 0006508 // proteolysis // inferred from electronic annotation /// 0006691 // leukotriene metabolic process // inferred from direct assay /// 0010043 // response to zinc ion // inferred from expression pattern /// 0019370 // leukotriene biosynthetic process // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0060509 // Type I pneumocyte differentiation // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004463 // leukotriene-A4 hydrolase activity // inferred from direct assay /// 0004463 // leukotriene-A4 hydrolase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389011_at BG374333 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374333 /DB_XREF=gi:13298805 /DB_XREF=UI-R-CV1-bso-b-05-0-UI.s1 /CLONE=UI-R-CV1-bso-b-05-0-UI /FEA=EST /CNT=13 /TID=Rn.13480.1 /TIER=Stack /STK=9 /UG=Rn.13480 /UG_TITLE=ESTs BG374333 non-SMC element 2, MMS21 homolog (S. cerevisiae) Nsmce2 299957 NM_001024876 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389012_at BM386606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386606 /DB_XREF=gi:18186659 /DB_XREF=UI-R-CN1-cjg-o-24-0-UI.s1 /CLONE=UI-R-CN1-cjg-o-24-0-UI /FEA=EST /CNT=13 /TID=Rn.18013.1 /TIER=Stack /STK=9 /UG=Rn.18013 /UG_TITLE=ESTs, Moderately similar to JE0384 NADH dehydrogenase (H.sapiens) BM386606 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2 Ndufb2 362344 NM_001108624 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005747 // mitochondrial respiratory chain complex I // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded 1389013_at BF420644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420644 /DB_XREF=gi:11408633 /DB_XREF=UI-R-BJ2-bpy-d-10-0-UI.s1 /CLONE=UI-R-BJ2-bpy-d-10-0-UI /FEA=EST /CNT=25 /TID=Rn.53957.2 /TIER=Stack /STK=9 /UG=Rn.53957 /UG_TITLE=ESTs, Weakly similar to RL7 RAT 60S RIBOSOMAL PROTEIN L7 (R.norvegicus) BF420644 1389014_at BI297612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297612 /DB_XREF=gi:14973892 /DB_XREF=UI-R-CV2-cgy-c-06-0-UI.s1 /CLONE=UI-R-CV2-cgy-c-06-0-UI /FEA=EST /CNT=17 /TID=Rn.66556.1 /TIER=Stack /STK=9 /UG=Rn.66556 /UG_TITLE=ESTs, Moderately similar to PBEF_HUMAN PRE-B CELL ENHANCING FACTOR PRECURSO (H.sapiens) BI297612 nicotinamide phosphoribosyltransferase Nampt 297508 NM_177928 0006769 // nicotinamide metabolic process // not recorded /// 0007049 // cell cycle // inferred from expression pattern /// 0007565 // female pregnancy // inferred from expression pattern /// 0008286 // insulin receptor signaling pathway // not recorded /// 0009435 // NAD biosynthetic process // inferred from electronic annotation /// 0009435 // NAD biosynthetic process // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019363 // pyridine nucleotide biosynthetic process // inferred from electronic annotation /// 0019674 // NAD metabolic process // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0051770 // positive regulation of nitric-oxide synthase biosynthetic process // not recorded /// 0060612 // adipose tissue development // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0004514 // nicotinate-nucleotide diphosphorylase (carboxylating) activity // inferred from electronic annotation /// 0004516 // nicotinate phosphoribosyltransferase activity // inferred from electronic annotation /// 0005125 // cytokine activity // inferred from direct assay /// 0008144 // drug binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0047280 // nicotinamide phosphoribosyltransferase activity // inferred from direct assay /// 0047280 // nicotinamide phosphoribosyltransferase activity // not recorded /// 0047280 // nicotinamide phosphoribosyltransferase activity // inferred from electronic annotation 1389015_at AI171982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171982 /DB_XREF=gi:3712022 /DB_XREF=EST217976 /CLONE=RMUBT44 /FEA=EST /CNT=16 /TID=Rn.758.1 /TIER=Stack /STK=9 /UG=Rn.758 /UG_TITLE=ESTs, Moderately similar to P8 MTCP-1 PROTEIN (M.musculus) AI171982 FUN14 domain containing 2 Fundc2 361288 NM_001135757 0005739 // mitochondrion // not recorded 1389016_at AI029306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029306 /DB_XREF=gi:4297657 /DB_XREF=UI-R-C0-ix-a-03-0-UI.s1 /CLONE=UI-R-C0-ix-a-03-0-UI /FEA=EST /CNT=15 /TID=Rn.54988.1 /TIER=Stack /STK=9 /UG=Rn.54988 /UG_TITLE=ESTs, Highly similar to I58376 hypothetical protein unp - mouse (M.musculus) AI029306 ubiquitin specific peptidase 4 (proto-oncogene) Usp4 290864 NM_001106093 /// NM_001135012 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0016579 // protein deubiquitination // not recorded /// 0016579 // protein deubiquitination // inferred from sequence or structural similarity /// 0031397 // negative regulation of protein ubiquitination // not recorded /// 0031397 // negative regulation of protein ubiquitination // inferred from sequence or structural similarity /// 0031647 // regulation of protein stability // not recorded /// 0031647 // regulation of protein stability // inferred from sequence or structural similarity /// 0034394 // protein localization at cell surface // not recorded /// 0034394 // protein localization at cell surface // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0004221 // ubiquitin thiolesterase activity // inferred from sequence or structural similarity /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0004843 // ubiquitin-specific protease activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0031685 // adenosine receptor binding // not recorded 1389017_at AI013888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013888 /DB_XREF=gi:3227944 /DB_XREF=EST208563 /CLONE=RSPBZ11 /FEA=EST /CNT=14 /TID=Rn.6715.1 /TIER=Stack /STK=9 /UG=Rn.6715 /UG_TITLE=ESTs AI013888 similar to Antxr2 protein LOC305633 305633 XM_001069109 /// XM_223745 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1389018_at BF411239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411239 /DB_XREF=gi:11399214 /DB_XREF=UI-R-CN0-bmh-g-07-0-UI.s1 /CLONE=UI-R-CN0-bmh-g-07-0-UI /FEA=EST /CNT=14 /TID=Rn.25165.1 /TIER=Stack /STK=9 /UG=Rn.25165 /UG_TITLE=ESTs BF411239 rCG59612-like LOC100362331 100362331 XM_002726953 /// XM_002729801 1389019_at AI178561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178561 /DB_XREF=gi:3729199 /DB_XREF=EST222239 /CLONE=RPLCS74 /FEA=EST /CNT=14 /TID=Rn.17984.1 /TIER=Stack /STK=9 /UG=Rn.17984 /UG_TITLE=ESTs AI178561 1389020_at BM389149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389149 /DB_XREF=gi:18189202 /DB_XREF=UI-R-DZ0-cko-k-03-0-UI.s1 /CLONE=UI-R-DZ0-cko-k-03-0-UI /FEA=EST /CNT=13 /TID=Rn.8430.1 /TIER=Stack /STK=9 /UG=Rn.8430 /UG_TITLE=ESTs BM389149 similar to immunoglobulin superfamily containing leucine-rich repeat LOC686539 686539 NM_001126300 0005515 // protein binding // inferred from electronic annotation 1389021_at BF284746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284746 /DB_XREF=gi:11215816 /DB_XREF=EST449337 /CLONE=RGIEV69 /FEA=EST /CNT=13 /TID=Rn.36474.1 /TIER=Stack /STK=9 /UG=Rn.36474 /UG_TITLE=ESTs, Weakly similar to M18.3.p (Caenorhabditis elegans) (C.elegans) BF284746 asparagine synthetase domain containing 1 Asnsd1 299507 NM_001106763 0006529 // asparagine biosynthetic process // inferred from electronic annotation 0004066 // asparagine synthase (glutamine-hydrolyzing) activity // inferred from electronic annotation 1389022_at AI102760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102760 /DB_XREF=gi:3707448 /DB_XREF=EST212049 /CLONE=REMBS18 /FEA=EST /CNT=13 /TID=Rn.9091.1 /TIER=Stack /STK=9 /UG=Rn.9091 /UG_TITLE=ESTs AI102760 1389023_at AI599504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599504 /DB_XREF=gi:4608552 /DB_XREF=EST251207 /CLONE=REMDZ32 /FEA=EST /CNT=13 /TID=Rn.7388.1 /TIER=Stack /STK=9 /UG=Rn.7388 /UG_TITLE=ESTs AI599504 Similar to Oligosaccharyl transferase 3 CG7748-PA RGD1311563 363160 NM_001170539 /// XM_002727142 /// XM_002729974 0006486 // protein glycosylation // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // not recorded /// 0018279 // protein N-linked glycosylation via asparagine // inferred from electronic annotation 0008250 // oligosaccharyltransferase complex // not recorded /// 0008250 // oligosaccharyltransferase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004576 // oligosaccharyl transferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1389024_at BG380647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380647 /DB_XREF=gi:13305119 /DB_XREF=UI-R-CT0-btz-g-04-0-UI.s1 /CLONE=UI-R-CT0-btz-g-04-0-UI /FEA=EST /CNT=13 /TID=Rn.3326.1 /TIER=Stack /STK=9 /UG=Rn.3326 /UG_TITLE=ESTs BG380647 sec1 family domain containing 2 Scfd2 498353 NM_001017499 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 1389025_at BI278688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278688 /DB_XREF=gi:14925784 /DB_XREF=UI-R-DB0-bza-f-06-0-UI.s1 /CLONE=UI-R-DB0-bza-f-06-0-UI /FEA=EST /CNT=12 /TID=Rn.11920.1 /TIER=Stack /STK=9 /UG=Rn.11920 /UG_TITLE=ESTs, Highly similar to 2204193A TFIIB:SUBUNIT=p30beta (H.sapiens) BI278688 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor Taf11 309638 NM_001008350 0006350 // transcription // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0043923 // positive regulation by host of viral transcription // inferred from electronic annotation /// 0043923 // positive regulation by host of viral transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005669 // transcription factor TFIID complex // inferred from electronic annotation /// 0005669 // transcription factor TFIID complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042809 // vitamin D receptor binding // inferred from electronic annotation /// 0042809 // vitamin D receptor binding // not recorded /// 0046966 // thyroid hormone receptor binding // inferred from electronic annotation /// 0046966 // thyroid hormone receptor binding // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1389026_at BF399429 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399429 /DB_XREF=gi:11384433 /DB_XREF=UI-R-CA1-bjb-h-09-0-UI.s1 /CLONE=UI-R-CA1-bjb-h-09-0-UI /FEA=EST /CNT=12 /TID=Rn.51262.1 /TIER=Stack /STK=9 /UG=Rn.51262 /UG_TITLE=ESTs BF399429 ankyrin repeat domain 42 Ankrd42 293117 NM_001135013 1389027_at BF284714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284714 /DB_XREF=gi:11215784 /DB_XREF=EST449305 /CLONE=RGIEV29 /FEA=EST /CNT=12 /TID=Rn.37631.1 /TIER=Stack /STK=9 /UG=Rn.37631 /UG_TITLE=ESTs, Weakly similar to G01447 GP36b glycoprotein (H.sapiens) BF284714 lectin, mannose-binding 2-like Lman2l 301343 NM_001106900 0015031 // protein transport // not recorded 0005789 // endoplasmic reticulum membrane // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation 1389028_at BI291460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291460 /DB_XREF=gi:14951023 /DB_XREF=UI-R-CV2-cgq-e-10-0-UI.s1 /CLONE=UI-R-CV2-cgq-e-10-0-UI /FEA=EST /CNT=12 /TID=Rn.9077.1 /TIER=Stack /STK=9 /UG=Rn.9077 /UG_TITLE=ESTs BI291460 nuclear receptor coactivator 6 Ncoa6 116464 XM_001064189 /// XM_342552 0006350 // transcription // inferred from electronic annotation /// 0006352 // transcription initiation // not recorded /// 0006352 // transcription initiation // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0030099 // myeloid cell differentiation // not recorded /// 0030099 // myeloid cell differentiation // inferred from sequence or structural similarity /// 0030099 // myeloid cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060716 // labyrinthine layer blood vessel development // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // not recorded /// 0035097 // histone methyltransferase complex // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003713 // transcription coactivator activity // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from direct assay /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from electronic annotation /// 0046966 // thyroid hormone receptor binding // not recorded /// 0046966 // thyroid hormone receptor binding // inferred from sequence or structural similarity /// 0046966 // thyroid hormone receptor binding // inferred from electronic annotation 1389029_at BE108923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108923 /DB_XREF=gi:8501028 /DB_XREF=UI-R-BS1-aza-a-01-0-UI.s1 /CLONE=UI-R-BS1-aza-a-01-0-UI /FEA=EST /CNT=12 /TID=Rn.25141.1 /TIER=Stack /STK=9 /UG=Rn.25141 /UG_TITLE=ESTs BE108923 Bromodomain containing 3 Brd3 362092 NM_001108575 0005515 // protein binding // not recorded 1389030_a_at BI282912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282912 /DB_XREF=gi:14934148 /DB_XREF=UI-R-CW0s-ccc-g-10-0-UI.s1 /CLONE=UI-R-CW0s-ccc-g-10-0-UI /FEA=EST /CNT=12 /TID=Rn.2801.2 /TIER=Stack /STK=9 /UG=Rn.2801 /LL=83805 /UG_GENE=Src /UG_TITLE=tyrosine protein kinase pp60-c-src BI282912 V-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) Src 83805 NM_031977 0001101 // response to acid // inferred from expression pattern /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006950 // response to stress // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from expression pattern /// 0007243 // intracellular protein kinase cascade // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0008283 // cell proliferation // inferred from direct assay /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009615 // response to virus // inferred from expression pattern /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0010740 // positive regulation of intracellular protein kinase cascade // inferred from mutant phenotype /// 0010907 // positive regulation of glucose metabolic process // inferred from mutant phenotype /// 0014911 // positive regulation of smooth muscle cell migration // inferred from mutant phenotype /// 0016310 // phosphorylation // not recorded /// 0016337 // cell-cell adhesion // inferred from expression pattern /// 0016477 // cell migration // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0033146 // regulation of estrogen receptor signaling pathway // not recorded /// 0033146 // regulation of estrogen receptor signaling pathway // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from direct assay /// 0045056 // transcytosis // inferred from direct assay /// 0045785 // positive regulation of cell adhesion // inferred from direct assay /// 0046628 // positive regulation of insulin receptor signaling pathway // inferred from direct assay /// 0048008 // platelet-derived growth factor receptor signaling pathway // inferred from expression pattern /// 0048011 // nerve growth factor receptor signaling pathway // inferred from direct assay /// 0048477 // oogenesis // not recorded /// 0048477 // oogenesis // inferred from electronic annotation /// 0050715 // positive regulation of cytokine secretion // inferred from mutant phenotype /// 0051222 // positive regulation of protein transport // inferred from mutant phenotype /// 0051385 // response to mineralocorticoid stimulus // inferred from expression pattern /// 0051602 // response to electrical stimulus // inferred from expression pattern /// 0060065 // uterus development // not recorded /// 0060065 // uterus development // inferred from electronic annotation /// 0060444 // branching involved in mammary gland duct morphogenesis // not recorded /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070542 // response to fatty acid // inferred from expression pattern /// 0070555 // response to interleukin-1 // not recorded /// 0071222 // cellular response to lipopolysaccharide // inferred from expression pattern /// 0071398 // cellular response to fatty acid // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from expression pattern 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005901 // caveola // inferred from direct assay /// 0005901 // caveola // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0019717 // synaptosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005080 // protein kinase C binding // inferred from physical interaction /// 0005102 // receptor binding // inferred from physical interaction /// 0005158 // insulin receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019904 // protein domain specific binding // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0042169 // SH2 domain binding // not recorded /// 0050839 // cell adhesion molecule binding // inferred from physical interaction 1389031_at AI179537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179537 /DB_XREF=gi:3730175 /DB_XREF=EST223257 /CLONE=RSPCI66 /FEA=EST /CNT=12 /TID=Rn.4212.1 /TIER=Stack /STK=9 /UG=Rn.4212 /UG_TITLE=ESTs, Highly similar to COG2_MOUSE Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP) (M.musculus) AI179537 similar to Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP) RGD1566215 301742 NM_001106929 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0030117 // membrane coat // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1389032_at AI408501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408501 /DB_XREF=gi:4252005 /DB_XREF=EST236791 /CLONE=ROVEQ16 /FEA=EST /CNT=12 /TID=Rn.7426.1 /TIER=Stack /STK=9 /UG=Rn.7426 /UG_TITLE=ESTs AI408501 mucolipin 1 Mcoln1 288371 NM_001105903 0003824 // catalytic activity // inferred from electronic annotation 1389033_at AW918775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918775 /DB_XREF=gi:8084560 /DB_XREF=EST350079 /CLONE=RGIEX88 /FEA=EST /CNT=12 /TID=Rn.3418.1 /TIER=Stack /STK=9 /UG=Rn.3418 /UG_TITLE=ESTs AW918775 similar to RIKEN cDNA 2900010M23 RGD1306917 361805 NM_001108528 0005739 // mitochondrion // not recorded 1389034_at BI295179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295179 /DB_XREF=gi:14958365 /DB_XREF=UI-R-DK0-ceg-g-01-0-UI.s1 /CLONE=UI-R-DK0-ceg-g-01-0-UI /FEA=EST /CNT=12 /TID=Rn.4165.1 /TIER=Stack /STK=9 /UG=Rn.4165 /UG_TITLE=ESTs, Highly similar to UBPI_MOUSE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 18 (UBIQUITIN THIOLESTERASE 18) (UBIQUITIN-SPECIFIC PROCESSING PROTEASE 18) (DEUBIQUITINATING ENZYME 18) (43 KDA UBIQUITIN-SPECIFIC PROTEASE) (M.musculus) BI295179 ubiquitin specific peptidase 18 Usp18 312688 NM_001014058 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032020 // ISG15-protein conjugation // inferred from electronic annotation /// 0032020 // ISG15-protein conjugation // not recorded 0005634 // nucleus // not recorded 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019785 // ISG15-specific protease activity // inferred from electronic annotation /// 0019785 // ISG15-specific protease activity // not recorded 1389035_at BF284830 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284830 /DB_XREF=gi:11215900 /DB_XREF=EST449421 /CLONE=RGIEW89 /FEA=EST /CNT=12 /TID=Rn.22339.1 /TIER=Stack /STK=9 /UG=Rn.22339 /UG_TITLE=ESTs, Moderately similar to T08721 hypothetical protein DKFZp566C243.1 (H.sapiens) BF284830 Yip1 domain family, member 3 Yipf3 301245 NM_001007801 0030154 // cell differentiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030133 // transport vesicle // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 1389036_at BM385629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385629 /DB_XREF=gi:18185682 /DB_XREF=UI-R-DM1-ckd-p-01-0-UI.s1 /CLONE=UI-R-DM1-ckd-p-01-0-UI /FEA=EST /CNT=17 /TID=Rn.2904.1 /TIER=Stack /STK=9 /UG=Rn.2904 /UG_TITLE=ESTs, Weakly similar to DPSD_CAEEL PUTATIVE PHOSPHATIDYLSERINE DECARBOXYLASE PROENZYME (C.elegans) BM385629 1389037_at BM986252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM986252 /DB_XREF=gi:19705641 /DB_XREF=EST531706 /CLONE=RGIAC43 /FEA=EST /CNT=16 /TID=Rn.50417.1 /TIER=Stack /STK=9 /UG=Rn.50417 /UG_TITLE=ESTs, Weakly similar to RAS-LIKE PROTEIN 3 (D.melanogaster) BM986252 Ras-like without CAAX 1 Rit1 499652 NM_001109185 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded 1389038_at BF285301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285301 /DB_XREF=gi:11216371 /DB_XREF=EST449892 /CLONE=RGIFD23 /FEA=EST /CNT=14 /TID=Rn.15900.1 /TIER=Stack /STK=9 /UG=Rn.15900 /UG_TITLE=ESTs, Highly similar to S50853 translation releasing factor eRF-1 (H.sapiens) BF285301 eukaryotic translation termination factor 1 Etf1 307503 NM_001008344 0006412 // translation // inferred from electronic annotation /// 0006415 // translational termination // inferred from electronic annotation /// 0006479 // protein methylation // inferred from electronic annotation /// 0006479 // protein methylation // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016149 // translation release factor activity, codon specific // inferred from electronic annotation 1389039_at BM386520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386520 /DB_XREF=gi:18186573 /DB_XREF=UI-R-CN1-cjg-o-17-0-UI.s1 /CLONE=UI-R-CN1-cjg-o-17-0-UI /FEA=EST /CNT=13 /TID=Rn.7736.1 /TIER=Stack /STK=9 /UG=Rn.7736 /UG_TITLE=ESTs BM386520 1389040_at AI170825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170825 /DB_XREF=gi:3710865 /DB_XREF=EST216764 /CLONE=RMUBB93 /FEA=EST /CNT=13 /TID=Rn.13005.1 /TIER=Stack /STK=9 /UG=Rn.13005 /UG_TITLE=ESTs AI170825 1389041_at BF408597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408597 /DB_XREF=gi:11396572 /DB_XREF=UI-R-BJ2-brf-f-04-0-UI.s1 /CLONE=UI-R-BJ2-brf-f-04-0-UI /FEA=EST /CNT=13 /TID=Rn.20017.1 /TIER=Stack /STK=9 /UG=Rn.20017 /UG_TITLE=ESTs, Moderately similar to T46455 hypothetical protein DKFZp434J032.1 (H.sapiens) BF408597 Vac14 homolog (S. cerevisiae) Vac14 307842 NM_177930 0005768 // endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005856 // cytoskeleton // non-traceable author statement /// 0010008 // endosome membrane // inferred from electronic annotation /// 0010008 // endosome membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389042_at AI030916 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030916 /DB_XREF=gi:3248742 /DB_XREF=UI-R-C0-jf-e-11-0-UI.s1 /CLONE=UI-R-C0-jf-e-11-0-UI /FEA=EST /CNT=13 /TID=Rn.8523.1 /TIER=Stack /STK=9 /UG=Rn.8523 /UG_TITLE=ESTs, Weakly similar to AMPB RAT AMINOPEPTIDASE B (R.norvegicus) AI030916 similar to arginyl aminopeptidase (aminopeptidase B)-like 1 LOC684035 684035 XR_085919 1389043_at AI101347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101347 /DB_XREF=gi:3706263 /DB_XREF=EST210636 /CLONE=RBRBL88 /FEA=EST /CNT=12 /TID=Rn.11549.1 /TIER=Stack /STK=9 /UG=Rn.11549 /UG_TITLE=ESTs, Weakly similar to C35D10.4.p (Caenorhabditis elegans) (C.elegans) AI101347 aarF domain containing kinase 4 Adck4 308453 NM_001012065 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1389044_at BF283388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283388 /DB_XREF=gi:11214458 /DB_XREF=EST447979 /CLONE=RGIEB33 /FEA=EST /CNT=12 /TID=Rn.37582.1 /TIER=Stack /STK=9 /UG=Rn.37582 /UG_TITLE=ESTs, Highly similar to GBF1_HUMAN Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 (BFA-resistant GEF 1) (H.sapiens) BF283388 golgi-specific brefeldin A resistant guanine nucleotide exchange factor 1 Gbf1 309451 NM_001191634 /// XM_001066196 /// XM_219953 0006890 // retrograde vesicle-mediated transport, Golgi to ER // not recorded /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0016044 // cellular membrane organization // not recorded /// 0032012 // regulation of ARF protein signal transduction // inferred from electronic annotation /// 0048205 // COPI coating of Golgi vesicle // not recorded 0000139 // Golgi membrane // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005777 // peroxisome // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0005795 // Golgi stack // inferred from direct assay /// 0005801 // cis-Golgi network // inferred from direct assay 0005086 // ARF guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005086 // ARF guanyl-nucleotide exchange factor activity // not recorded /// 0005515 // protein binding // not recorded 1389045_at AW251869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251869 /DB_XREF=gi:6595460 /DB_XREF=UI-R-BJ0-adn-a-03-0-UI.s1 /CLONE=UI-R-BJ0-adn-a-03-0-UI /FEA=EST /CNT=12 /TID=Rn.41482.1 /TIER=Stack /STK=9 /UG=Rn.41482 /UG_TITLE=ESTs AW251869 1389046_at AA860015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA860015 /DB_XREF=gi:4230547 /DB_XREF=UI-R-E0-ca-c-12-0-UI.s1 /CLONE=UI-R-E0-ca-c-12-0-UI /FEA=EST /CNT=12 /TID=Rn.857.1 /TIER=Stack /STK=9 /UG=Rn.857 /UG_TITLE=ESTs, Weakly similar to T50607 hypothetical protein DKFZp434I1016.1 (H.sapiens) AA860015 1389047_at AI009167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009167 /DB_XREF=gi:3222999 /DB_XREF=EST203618 /CLONE=REMBJ81 /FEA=EST /CNT=12 /TID=Rn.6909.1 /TIER=Stack /STK=9 /UG=Rn.6909 /UG_TITLE=ESTs, Highly similar to BAG2_HUMAN BAG-family molecular chaperone regulator-2 (H.sapiens) AI009167 Bcl2-associated athanogene 2 Bag2 690038 NM_001128195 0006915 // apoptosis // inferred from electronic annotation /// 0019538 // protein metabolic process // inferred from electronic annotation /// 0019538 // protein metabolic process // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389048_at BI278614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278614 /DB_XREF=gi:14925635 /DB_XREF=UI-R-CW0-bxn-g-06-0-UI.s1 /CLONE=UI-R-CW0-bxn-g-06-0-UI /FEA=EST /CNT=11 /TID=Rn.9305.1 /TIER=Stack /STK=9 /UG=Rn.9305 /UG_TITLE=ESTs, Moderately similar to BMP1 MOUSE BONE MORPHOGENETIC PROTEIN 1 PRECURSOR (M.musculus) BI278614 bone morphogenetic protein 1 Bmp1 83470 NM_031323 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0061036 // positive regulation of cartilage development // not recorded /// 0061036 // positive regulation of cartilage development // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0031988 // membrane-bounded vesicle // inferred from direct assay 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1389049_at BM382847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM382847 /DB_XREF=gi:18182900 /DB_XREF=UI-R-BT1-bko-e-06-0-UI.s1 /CLONE=UI-R-BT1-bko-e-06-0-UI /FEA=EST /CNT=11 /TID=Rn.23344.1 /TIER=Stack /STK=9 /UG=Rn.23344 /UG_TITLE=ESTs BM382847 1389050_at AI170797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170797 /DB_XREF=gi:3710837 /DB_XREF=EST216736 /CLONE=RMUBB62 /FEA=EST /CNT=11 /TID=Rn.8286.1 /TIER=Stack /STK=9 /UG=Rn.8286 /UG_TITLE=ESTs AI170797 dual specificity phosphatase 3 Dusp3 498003 NM_001173376 /// XM_001081500 /// XM_573199 0000188 // inactivation of MAPK activity // inferred from electronic annotation /// 0000188 // inactivation of MAPK activity // not recorded /// 0001701 // in utero embryonic development // inferred from direct assay /// 0006470 // protein dephosphorylation // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // not recorded /// 0043409 // negative regulation of MAPKKK cascade // not recorded /// 0043409 // negative regulation of MAPKKK cascade // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // not recorded /// 0046329 // negative regulation of JNK cascade // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // not recorded /// 0050860 // negative regulation of T cell receptor signaling pathway // inferred from electronic annotation /// 0050860 // negative regulation of T cell receptor signaling pathway // not recorded /// 0050868 // negative regulation of T cell activation // inferred from electronic annotation /// 0050868 // negative regulation of T cell activation // not recorded /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070373 // negative regulation of ERK1 and ERK2 cascade // not recorded 0001772 // immunological synapse // inferred from electronic annotation /// 0001772 // immunological synapse // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004721 // phosphoprotein phosphatase activity // not recorded /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0033549 // MAP kinase phosphatase activity // inferred from electronic annotation /// 0033549 // MAP kinase phosphatase activity // not recorded 1389051_at BI274189 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274189 /DB_XREF=gi:14884874 /DB_XREF=UI-R-CW0-bwg-a-09-0-UI.s1 /CLONE=UI-R-CW0-bwg-a-09-0-UI /FEA=EST /CNT=11 /TID=Rn.49295.1 /TIER=Stack /STK=9 /UG=Rn.49295 /UG_TITLE=ESTs, Highly similar to RRXB RAT RETINOIC ACID RECEPTOR RXR-BETA (R.norvegicus) BI274189 retinoid X receptor beta Rxrb 361801 NM_206849 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048384 // retinoic acid receptor signaling pathway // inferred from electronic annotation /// 0048384 // retinoic acid receptor signaling pathway // not recorded /// 0055012 // ventricular cardiac muscle cell differentiation // inferred from electronic annotation /// 0055012 // ventricular cardiac muscle cell differentiation // not recorded /// 0060038 // cardiac muscle cell proliferation // inferred from electronic annotation /// 0060038 // cardiac muscle cell proliferation // not recorded /// 0071300 // cellular response to retinoic acid // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003706 // ligand-regulated transcription factor activity // not recorded /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0004886 // retinoid-X receptor activity // inferred from direct assay /// 0004886 // retinoid-X receptor activity // not recorded /// 0004886 // retinoid-X receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0030375 // thyroid hormone receptor coactivator activity // inferred from direct assay /// 0042809 // vitamin D receptor binding // inferred from direct assay /// 0042974 // retinoic acid receptor binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046966 // thyroid hormone receptor binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay 1389052_at BI278584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278584 /DB_XREF=gi:14925575 /DB_XREF=UI-R-CW0-bxn-d-12-0-UI.s1 /CLONE=UI-R-CW0-bxn-d-12-0-UI /FEA=EST /CNT=11 /TID=Rn.24585.1 /TIER=Stack /STK=9 /UG=Rn.24585 /UG_TITLE=ESTs BI278584 tetratricopeptide repeat domain 13 Ttc13 292095 NM_001136162 0005488 // binding // inferred from electronic annotation 1389053_at AI171280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171280 /DB_XREF=gi:3711320 /DB_XREF=EST217235 /CLONE=RMUBI47 /FEA=EST /CNT=11 /TID=Rn.17104.1 /TIER=Stack /STK=9 /UG=Rn.17104 /UG_TITLE=ESTs AI171280 1389054_at BE113616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113616 /DB_XREF=gi:8505721 /DB_XREF=UI-R-BJ1-awg-d-05-0-UI.s1 /CLONE=UI-R-BJ1-awg-d-05-0-UI /FEA=EST /CNT=11 /TID=Rn.29370.1 /TIER=Stack /STK=9 /UG=Rn.29370 /UG_TITLE=ESTs BE113616 similar to RIKEN cDNA 0610040J01 LOC498368 498368 NM_001017500 1389055_at AI104479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104479 /DB_XREF=gi:3704974 /DB_XREF=EST213768 /CLONE=RHECE03 /FEA=EST /CNT=11 /TID=Rn.18887.1 /TIER=Stack /STK=9 /UG=Rn.18887 /UG_TITLE=ESTs, Weakly similar to CYPM RAT PEPTIDYL-PROLYL CIS-TRANS ISOMERASE, MITOCHONDRIAL PRECURSOR (R.norvegicus) AI104479 peptidylprolyl isomerase E (cyclophilin E) Ppie 298508 NM_001047868 0006457 // protein folding // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded 0005634 // nucleus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation 1389056_at BF394168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394168 /DB_XREF=gi:11379032 /DB_XREF=UI-R-CA0-bha-h-03-0-UI.s1 /CLONE=UI-R-CA0-bha-h-03-0-UI /FEA=EST /CNT=11 /TID=Rn.17073.1 /TIER=Stack /STK=9 /UG=Rn.17073 /UG_TITLE=ESTs, Moderately similar to TRM1_HUMAN PROBABLE N2,N2-DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE (TRNA(GUANINE-26,N2-N2) METHYLTRANSFERASE) (TRNA 2,2-DIMETHYLGUANOSINE-26 METHYLTRANSFERASE) (TRNA(M(2,2)G26)DIMETHYLTRANSFERASE) (H.sapiens) BF394168 TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae) Trmt1 288914 NM_001013870 0008033 // tRNA processing // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0004809 // tRNA (guanine-N2-)-methyltransferase activity // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1389057_at AI007774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI007774 /DB_XREF=gi:3221606 /DB_XREF=EST202225 /CLONE=RBRAU47 /FEA=EST /CNT=10 /TID=Rn.2761.1 /TIER=Stack /STK=9 /UG=Rn.2761 /UG_TITLE=ESTs, Moderately similar to T34534 hypothetical protein DKFZp434E0517.1 (H.sapiens) AI007774 ARV1 homolog (S. cerevisiae) Arv1 292097 NM_001106197 1389058_at BI279694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279694 /DB_XREF=gi:14927749 /DB_XREF=UI-R-DE0-caf-f-02-0-UI.s1 /CLONE=UI-R-DE0-caf-f-02-0-UI /FEA=EST /CNT=10 /TID=Rn.9452.1 /TIER=Stack /STK=9 /UG=Rn.9452 /UG_TITLE=ESTs, Moderately similar to A49618 probable ataxia-telangiectasia group D protein (H.sapiens) BI279694 tripartite motif-containing 29 Trim29 300656 NM_001106815 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1389059_at BI278651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278651 /DB_XREF=gi:14925709 /DB_XREF=UI-R-DB0-bza-c-02-0-UI.s1 /CLONE=UI-R-DB0-bza-c-02-0-UI /FEA=EST /CNT=10 /TID=Rn.22099.1 /TIER=Stack /STK=9 /UG=Rn.22099 /UG_TITLE=ESTs BI278651 1389060_at BI297313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297313 /DB_XREF=gi:14962570 /DB_XREF=UI-R-CV2-cgx-a-01-0-UI.s1 /CLONE=UI-R-CV2-cgx-a-01-0-UI /FEA=EST /CNT=10 /TID=Rn.34660.1 /TIER=Stack /STK=9 /UG=Rn.34660 /UG_TITLE=ESTs BI297313 1389061_at AI171164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171164 /DB_XREF=gi:3711204 /DB_XREF=EST217113 /CLONE=RMUBH03 /FEA=EST /CNT=10 /TID=Rn.10474.2 /TIER=Stack /STK=9 /UG=Rn.10474 /LL=113975 /UG_GENE=Pom121 /UG_TITLE=nuclear pore membrane glycoprotein 121 kD AI171164 NOL1/NOP2/Sun domain family, member 5 Nsun5 288595 NM_001191593 /// XM_001071177 /// XM_213749 1389062_at BE109152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109152 /DB_XREF=gi:8501257 /DB_XREF=UI-R-BS1-azb-e-07-0-UI.s1 /CLONE=UI-R-BS1-azb-e-07-0-UI /FEA=EST /CNT=10 /TID=Rn.19642.1 /TIER=Stack /STK=9 /UG=Rn.19642 /UG_TITLE=ESTs, Highly similar to RED MOUSE RED PROTEIN (M.musculus) BE109152 IK cytokine /// WD repeat domain 55 Ik /// Wdr55 291659 /// 307494 NM_001005537 /// NM_001017932 0006364 // rRNA processing // not recorded /// 0006364 // rRNA processing // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 1389063_at BG378160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378160 /DB_XREF=gi:13302632 /DB_XREF=UI-R-CV1-bvo-f-09-0-UI.s1 /CLONE=UI-R-CV1-bvo-f-09-0-UI /FEA=EST /CNT=10 /TID=Rn.11474.1 /TIER=Stack /STK=9 /UG=Rn.11474 /UG_TITLE=ESTs BG378160 exportin 6 Xpo6 293476 NM_001011935 0006611 // protein export from nucleus // not recorded /// 0006886 // intracellular protein transport // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0008565 // protein transporter activity // not recorded 1389064_at BE111732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111732 /DB_XREF=gi:8503837 /DB_XREF=UI-R-BJ1-avx-b-09-0-UI.s1 /CLONE=UI-R-BJ1-avx-b-09-0-UI /FEA=EST /CNT=10 /TID=Rn.22697.1 /TIER=Stack /STK=9 /UG=Rn.22697 /UG_TITLE=ESTs BE111732 fem-1 homolog c (C. elegans) Fem1c 302288 NM_001106932 1389065_at BM392304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392304 /DB_XREF=gi:18192357 /DB_XREF=UI-R-DO1-ckp-d-16-0-UI.s1 /CLONE=UI-R-DO1-ckp-d-16-0-UI /FEA=EST /CNT=10 /TID=Rn.7057.1 /TIER=Stack /STK=9 /UG=Rn.7057 /UG_TITLE=ESTs BM392304 RNA binding motif protein 34 Rbm34 307956 NM_001014015 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1389066_at BI274408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274408 /DB_XREF=gi:14885291 /DB_XREF=UI-R-CW0-bwi-e-11-0-UI.s1 /CLONE=UI-R-CW0-bwi-e-11-0-UI /FEA=EST /CNT=10 /TID=Rn.24428.1 /TIER=Stack /STK=9 /UG=Rn.24428 /UG_TITLE=ESTs BI274408 regulator of calcineurin 2 Rcan2 140666 NM_175578 0019722 // calcium-mediated signaling // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation 1389067_at AI180349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180349 /DB_XREF=gi:3730987 /DB_XREF=EST224093 /CLONE=RSPCV16 /FEA=EST /CNT=10 /TID=Rn.8208.1 /TIER=Stack /STK=9 /UG=Rn.8208 /UG_TITLE=ESTs AI180349 solute carrier organic anion transporter family, member 4a1 Slco4a1 171144 NM_133608 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0042403 // thyroid hormone metabolic process // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0015349 // thyroid hormone transmembrane transporter activity // inferred from direct assay 1389068_at BI288819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288819 /DB_XREF=gi:14945759 /DB_XREF=UI-R-DK0-cdf-c-01-0-UI.s1 /CLONE=UI-R-DK0-cdf-c-01-0-UI /FEA=EST /CNT=10 /TID=Rn.23461.1 /TIER=Stack /STK=9 /UG=Rn.23461 /UG_TITLE=ESTs, Highly similar to T12539 hypothetical protein DKFZp434J154.1 (H.sapiens) BI288819 WD repeat domain, phosphoinositide interacting 2 Wipi2 288498 NM_001007615 0043234 // protein complex // not recorded 1389069_at BM384061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384061 /DB_XREF=gi:18184114 /DB_XREF=UI-R-DZ0-cks-i-12-0-UI.s1 /CLONE=UI-R-DZ0-cks-i-12-0-UI /FEA=EST /CNT=10 /TID=Rn.12463.1 /TIER=Stack /STK=9 /UG=Rn.12463 /UG_TITLE=ESTs BM384061 ring finger protein 8 Rnf8 361815 NM_001025727 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // not recorded /// 0006302 // double-strand break repair // inferred from sequence or structural similarity /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0010212 // response to ionizing radiation // not recorded /// 0010212 // response to ionizing radiation // inferred from sequence or structural similarity /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0033522 // histone H2A ubiquitination // not recorded /// 0033522 // histone H2A ubiquitination // inferred from sequence or structural similarity /// 0033523 // histone H2B ubiquitination // inferred from sequence or structural similarity /// 0045739 // positive regulation of DNA repair // not recorded /// 0045739 // positive regulation of DNA repair // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation 0000151 // ubiquitin ligase complex // not recorded /// 0000151 // ubiquitin ligase complex // inferred from sequence or structural similarity /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0042393 // histone binding // not recorded /// 0042393 // histone binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1389070_at AI179506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179506 /DB_XREF=gi:3730144 /DB_XREF=EST223225 /CLONE=RSPCI30 /FEA=EST /CNT=10 /TID=Rn.7999.1 /TIER=Stack /STK=9 /UG=Rn.7999 /UG_TITLE=ESTs AI179506 1389071_at BI287221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287221 /DB_XREF=gi:14942627 /DB_XREF=UI-R-CW0s-ccl-d-03-0-UI.s1 /CLONE=UI-R-CW0s-ccl-d-03-0-UI /FEA=EST /CNT=10 /TID=Rn.16719.1 /TIER=Stack /STK=9 /UG=Rn.16719 /UG_TITLE=ESTs, Weakly similar to KIAA0903 protein (H.sapiens) BI287221 EH domain binding protein 1-like 1 Ehbp1l1 309169 NM_001025117 /// NM_001129997 1389072_at AI412323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412323 /DB_XREF=gi:4255827 /DB_XREF=EST240621 /CLONE=RBRDV18 /FEA=EST /CNT=10 /TID=Rn.2567.1 /TIER=Stack /STK=9 /UG=Rn.2567 /UG_TITLE=ESTs AI412323 myotubularin related protein 4 Mtmr4 287607 NM_001105827 0016311 // dephosphorylation // inferred from electronic annotation 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389073_at AA851248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851248 /DB_XREF=gi:2938788 /DB_XREF=EST194016 /CLONE=RPLAE35 /FEA=EST /CNT=10 /TID=Rn.6988.1 /TIER=Stack /STK=9 /UG=Rn.6988 /UG_TITLE=ESTs AA851248 receptor accessory protein 4 Reep4 306014 NM_001025279 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1389074_at AI232737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232737 /DB_XREF=gi:4135796 /DB_XREF=EST229425 /CLONE=RKICF83 /FEA=EST /CNT=10 /TID=Rn.2386.1 /TIER=Stack /STK=9 /UG=Rn.2386 /UG_TITLE=ESTs AI232737 FCH and double SH3 domains 2 Fchsd2 308864 NM_001107539 0005515 // protein binding // not recorded 1389075_at AI600221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600221 /DB_XREF=gi:4609269 /DB_XREF=EST251924 /CLONE=REMED71 /FEA=EST /CNT=10 /TID=Rn.6262.1 /TIER=Stack /STK=9 /UG=Rn.6262 /UG_TITLE=ESTs AI600221 1389076_at BF282185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282185 /DB_XREF=gi:11213255 /DB_XREF=EST446776 /CLONE=RGIDF34 /FEA=EST /CNT=10 /TID=Rn.25426.1 /TIER=Stack /STK=9 /UG=Rn.25426 /UG_TITLE=ESTs, Moderately similar to PKL2 RAT PROTEIN KINASE C-LIKE 2 (R.norvegicus) BF282185 protein kinase N3 Pkn3 296619 NM_001047861 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1389077_at AI179974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179974 /DB_XREF=gi:4135204 /DB_XREF=EST223705 /CLONE=RSPCO39 /FEA=EST /CNT=10 /TID=Rn.1895.1 /TIER=Stack /STK=9 /UG=Rn.1895 /UG_TITLE=ESTs, Weakly similar to T12542 hypothetical protein DKFZp434L194.1 (H.sapiens) AI179974 Golgi transport 1 homolog B (S. cerevisiae) Golt1b 362460 NM_001113783 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded 1389078_at BF282132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282132 /DB_XREF=gi:11213202 /DB_XREF=EST446723 /CLONE=RGIDC50 /FEA=EST /CNT=10 /TID=Rn.20810.1 /TIER=Stack /STK=9 /UG=Rn.20810 /UG_TITLE=ESTs BF282132 F-box and leucine-rich repeat protein 6 Fbxl6 362941 NM_001005563 1389079_at AI639268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639268 /DB_XREF=gi:4700302 /DB_XREF=rx03018s /CLONE=rx03018 /FEA=EST /CNT=10 /TID=Rn.34592.1 /TIER=Stack /STK=9 /UG=Rn.34592 /UG_TITLE=ESTs, Weakly similar to T17307 hypothetical protein DKFZp566O084.1 (H.sapiens) AI639268 dehydrogenase/reductase (SDR family) member 7C Dhrs7c 287411 XM_001078936 /// XM_213343 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1389080_at AI233457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233457 /DB_XREF=gi:3817337 /DB_XREF=EST230145 /CLONE=RKIDF24 /FEA=EST /CNT=17 /TID=Rn.8556.1 /TIER=Stack /STK=9 /UG=Rn.8556 /UG_TITLE=ESTs, Weakly similar to HUD RAT PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD HOMOLOG (R.norvegicus) AI233457 RNA binding motif protein 4B Rbm4b 474154 NM_001007014 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389081_at BG380336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380336 /DB_XREF=gi:13304808 /DB_XREF=UI-R-CS0-btv-h-11-0-UI.s1 /CLONE=UI-R-CS0-btv-h-11-0-UI /FEA=EST /CNT=16 /TID=Rn.32363.1 /TIER=Stack /STK=9 /UG=Rn.32363 /UG_TITLE=ESTs, Weakly similar to DIA1_HUMAN DIAPHANOUS PROTEIN HOMOLOG 1 (H.sapiens) BG380336 vacuolar protein sorting 37 homolog B (S. cerevisiae) Vps37b 288659 NM_001105928 1389082_at BF398612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398612 /DB_XREF=gi:11383607 /DB_XREF=UI-R-BS2-beq-h-02-0-UI.s1 /CLONE=UI-R-BS2-beq-h-02-0-UI /FEA=EST /CNT=12 /TID=Rn.11558.1 /TIER=Stack /STK=9 /UG=Rn.11558 /UG_TITLE=ESTs BF398612 1389083_at AI411510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411510 /DB_XREF=gi:4255014 /DB_XREF=EST239804 /CLONE=RKIEN07 /FEA=EST /CNT=11 /TID=Rn.12474.1 /TIER=Stack /STK=9 /UG=Rn.12474 /UG_TITLE=ESTs AI411510 SMEK homolog 2, suppressor of mek1 (Dictyostelium) Smek2 360993 NM_001108367 0019216 // regulation of lipid metabolic process // inferred from mutant phenotype 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389084_at AI177159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177159 /DB_XREF=gi:3727797 /DB_XREF=EST220766 /CLONE=ROVCB58 /FEA=EST /CNT=10 /TID=Rn.19811.1 /TIER=Stack /STK=9 /UG=Rn.19811 /UG_TITLE=ESTs AI177159 1389085_at BI296359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296359 /DB_XREF=gi:14960710 /DB_XREF=UI-R-DK0-cez-d-11-0-UI.s1 /CLONE=UI-R-DK0-cez-d-11-0-UI /FEA=EST /CNT=10 /TID=Rn.13078.1 /TIER=Stack /STK=9 /UG=Rn.13078 /UG_TITLE=ESTs BI296359 1389086_at BF408444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408444 /DB_XREF=gi:11396419 /DB_XREF=UI-R-BJ2-brc-g-11-0-UI.s1 /CLONE=UI-R-BJ2-brc-g-11-0-UI /FEA=EST /CNT=10 /TID=Rn.19527.1 /TIER=Stack /STK=9 /UG=Rn.19527 /UG_TITLE=ESTs BF408444 1389087_at AI599023 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599023 /DB_XREF=gi:4608071 /DB_XREF=EST250726 /CLONE=REMEA06 /FEA=EST /CNT=10 /TID=Rn.20099.1 /TIER=Stack /STK=9 /UG=Rn.20099 /UG_TITLE=ESTs, Weakly similar to S59315 hypothetical protein YLR127c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AI599023 anaphase promoting complex subunit 2 Anapc2 296558 NM_001100532 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0045773 // positive regulation of axon extension // inferred from mutant phenotype /// 0050775 // positive regulation of dendrite morphogenesis // inferred from mutant phenotype /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070979 // protein K11-linked ubiquitination // not recorded /// 0070979 // protein K11-linked ubiquitination // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // not recorded /// 0005680 // anaphase-promoting complex // not recorded /// 0005680 // anaphase-promoting complex // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0031461 // cullin-RING ubiquitin ligase complex // inferred from electronic annotation 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation 1389088_at AI600029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600029 /DB_XREF=gi:4609077 /DB_XREF=EST251732 /CLONE=REMDO40 /FEA=EST /CNT=10 /TID=Rn.2576.1 /TIER=Stack /STK=9 /UG=Rn.2576 /UG_TITLE=ESTs AI600029 activity-dependent neuroprotector homeobox Adnp 64622 NM_022681 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007614 // short-term memory // inferred from direct assay /// 0009743 // response to carbohydrate stimulus // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010629 // negative regulation of gene expression // inferred from direct assay /// 0010835 // regulation of protein ADP-ribosylation // inferred from direct assay /// 0010976 // positive regulation of neuron projection development // inferred from direct assay /// 0030828 // positive regulation of cGMP biosynthetic process // inferred from direct assay /// 0031668 // cellular response to extracellular stimulus // inferred from expression pattern /// 0032091 // negative regulation of protein binding // inferred from direct assay /// 0032147 // activation of protein kinase activity // inferred from direct assay /// 0033484 // nitric oxide homeostasis // inferred from direct assay /// 0043524 // negative regulation of neuron apoptosis // inferred from direct assay /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043526 // neuroprotection // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045773 // positive regulation of axon extension // inferred from direct assay /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050805 // negative regulation of synaptic transmission // inferred from mutant phenotype /// 0051965 // positive regulation of synaptogenesis // inferred from direct assay /// 0060206 // estrous cycle phase // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // inferred from physical interaction 1389089_at BM389027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389027 /DB_XREF=gi:18189080 /DB_XREF=UI-R-DZ0-cko-b-23-0-UI.s1 /CLONE=UI-R-DZ0-cko-b-23-0-UI /FEA=EST /CNT=10 /TID=Rn.13274.1 /TIER=Stack /STK=9 /UG=Rn.13274 /UG_TITLE=ESTs BM389027 solute carrier family 39 (zinc transporter), member 7 Slc39a7 294281 NM_001008885 /// NM_001164744 0030001 // metal ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005789 // endoplasmic reticulum membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005385 // zinc ion transmembrane transporter activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046873 // metal ion transmembrane transporter activity // inferred from electronic annotation 1389090_at BI284350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284350 /DB_XREF=gi:14936947 /DB_XREF=UI-R-CX0s-cco-b-06-0-UI.s1 /CLONE=UI-R-CX0s-cco-b-06-0-UI /FEA=EST /CNT=9 /TID=Rn.8783.1 /TIER=Stack /STK=9 /UG=Rn.8783 /UG_TITLE=ESTs, Weakly similar to YNV8_YEAST HYPOTHETICAL 66.5 KD PROTEIN IN ALG9-RAP1 INTERGENIC REGION (S.cerevisiae) BI284350 Werner helicase interacting protein 1 Wrnip1 282835 NM_172332 0000731 // DNA synthesis involved in DNA repair // not recorded /// 0000731 // DNA synthesis involved in DNA repair // inferred from sequence or structural similarity /// 0000731 // DNA synthesis involved in DNA repair // inferred from electronic annotation /// 0006260 // DNA replication // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0030174 // regulation of DNA-dependent DNA replication initiation // not recorded /// 0030174 // regulation of DNA-dependent DNA replication initiation // inferred from sequence or structural similarity /// 0030174 // regulation of DNA-dependent DNA replication initiation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0016887 // ATPase activity // inferred from sequence or structural similarity /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389091_at AI411205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411205 /DB_XREF=gi:4254709 /DB_XREF=EST239499 /CLONE=RKIER42 /FEA=EST /CNT=9 /TID=Rn.8684.1 /TIER=Stack /STK=9 /UG=Rn.8684 /UG_TITLE=ESTs, Weakly similar to I58376 hypothetical protein unp - mouse (M.musculus) AI411205 ubiquitin specific peptidase 3 Usp3 363084 NM_001025424 0000278 // mitotic cell cycle // not recorded /// 0006281 // DNA repair // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0016578 // histone deubiquitination // not recorded /// 0031647 // regulation of protein stability // not recorded 0000790 // nuclear chromatin // not recorded 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042393 // histone binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1389092_at AI178808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178808 /DB_XREF=gi:3729446 /DB_XREF=EST222490 /CLONE=RSPBM86 /FEA=EST /CNT=9 /TID=Rn.14508.1 /TIER=Stack /STK=9 /UG=Rn.14508 /UG_TITLE=ESTs, Highly similar to CYTOKINE RECEPTOR COMMON GAMMA CHAIN PRECURSOR (M.musculus) AI178808 interleukin 2 receptor, gamma Il2rg 140924 NM_080889 0006955 // immune response // traceable author statement /// 0010468 // regulation of gene expression // not recorded /// 0032831 // positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation // not recorded /// 0033089 // positive regulation of T cell differentiation in thymus // not recorded /// 0045579 // positive regulation of B cell differentiation // not recorded 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // inferred from mutant phenotype /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // traceable author statement /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019955 // cytokine binding // traceable author statement /// 0019976 // interleukin-2 binding // inferred from mutant phenotype /// 0019976 // interleukin-2 binding // not recorded /// 0019982 // interleukin-7 binding // inferred from mutant phenotype 1389093_at BI281735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281735 /DB_XREF=gi:14931785 /DB_XREF=UI-R-CT0s-cav-h-05-0-UI.s1 /CLONE=UI-R-CT0s-cav-h-05-0-UI /FEA=EST /CNT=9 /TID=Rn.9149.3 /TIER=Stack /STK=9 /UG=Rn.9149 /LL=29431 /UG_GENE=Pak1 /UG_TITLE=p21 (CDKN1A)-activated kinase 1 BI281735 1389094_at BI297316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297316 /DB_XREF=gi:14962576 /DB_XREF=UI-R-CV2-cgx-a-04-0-UI.s1 /CLONE=UI-R-CV2-cgx-a-04-0-UI /FEA=EST /CNT=9 /TID=Rn.66211.1 /TIER=Stack /STK=9 /UG=Rn.66211 /UG_TITLE=ESTs, Weakly similar to S26689 hypothetical protein hc1 - mouse (M.musculus) BI297316 1389095_at BE110539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110539 /DB_XREF=gi:8502644 /DB_XREF=UI-R-BJ1-avt-b-12-0-UI.s1 /CLONE=UI-R-BJ1-avt-b-12-0-UI /FEA=EST /CNT=9 /TID=Rn.51907.1 /TIER=Stack /STK=9 /UG=Rn.51907 /UG_TITLE=ESTs BE110539 biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein Boc 360715 NM_001108317 0007224 // smoothened signaling pathway // not recorded /// 0007411 // axon guidance // not recorded /// 0030030 // cell projection organization // not recorded /// 0045663 // positive regulation of myoblast differentiation // not recorded /// 0051789 // response to protein stimulus // not recorded 0005886 // plasma membrane // not recorded /// 0030424 // axon // not recorded /// 0030426 // growth cone // not recorded /// 0043025 // neuronal cell body // not recorded 0005515 // protein binding // not recorded 1389096_at BI274243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274243 /DB_XREF=gi:14884984 /DB_XREF=UI-R-CW0-bwg-f-08-0-UI.s1 /CLONE=UI-R-CW0-bwg-f-08-0-UI /FEA=EST /CNT=9 /TID=Rn.12591.1 /TIER=Stack /STK=9 /UG=Rn.12591 /UG_TITLE=ESTs BI274243 microtubule associated monoxygenase, calponin and LIM domain containing 2 Mical2 365352 NM_001139508 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389097_at BI275857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275857 /DB_XREF=gi:14920197 /DB_XREF=UI-R-CX0-bxh-d-04-0-UI.s1 /CLONE=UI-R-CX0-bxh-d-04-0-UI /FEA=EST /CNT=9 /TID=Rn.46375.1 /TIER=Stack /STK=9 /UG=Rn.46375 /UG_TITLE=ESTs BI275857 1389098_at AI407261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407261 /DB_XREF=gi:4250765 /DB_XREF=EST235549 /CLONE=ROVDQ38 /FEA=EST /CNT=9 /TID=Rn.15705.1 /TIER=Stack /STK=9 /UG=Rn.15705 /UG_TITLE=ESTs AI407261 upstream binding protein 1 (LBP-1a) Ubp1 301038 NM_001191819 /// XM_001076644 /// XM_002727141 /// XM_002729971 /// XM_238562 0001525 // angiogenesis // not recorded 1389099_at AI600184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600184 /DB_XREF=gi:4609232 /DB_XREF=EST251887 /CLONE=REMEC14 /FEA=EST /CNT=9 /TID=Rn.2787.1 /TIER=Stack /STK=9 /UG=Rn.2787 /UG_TITLE=ESTs AI600184 zinc finger protein 428 Zfp428 361519 NM_001108476 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1389100_at BF409831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409831 /DB_XREF=gi:11397806 /DB_XREF=UI-R-CA1-bjr-c-10-0-UI.s1 /CLONE=UI-R-CA1-bjr-c-10-0-UI /FEA=EST /CNT=9 /TID=Rn.63099.1 /TIER=Stack /STK=9 /UG=Rn.63099 /UG_TITLE=ESTs BF409831 EPM2A (laforin) interacting protein 1 Epm2aip1 316021 XM_001076356 /// XM_002727140 /// XM_236659 1389101_at BE120340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120340 /DB_XREF=gi:8512445 /DB_XREF=UI-R-CA0-baq-c-08-0-UI.s1 /CLONE=UI-R-CA0-baq-c-08-0-UI /FEA=EST /CNT=9 /TID=Rn.24629.1 /TIER=Stack /STK=9 /UG=Rn.24629 /UG_TITLE=ESTs BE120340 cyclin C Ccnc 114839 NM_001100472 0007049 // cell cycle // traceable author statement /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389102_at BG378147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378147 /DB_XREF=gi:13302619 /DB_XREF=UI-R-CV1-bvo-e-07-0-UI.s1 /CLONE=UI-R-CV1-bvo-e-07-0-UI /FEA=EST /CNT=9 /TID=Rn.1482.1 /TIER=Stack /STK=9 /UG=Rn.1482 /UG_TITLE=ESTs BG378147 dedicator of cyto-kinesis 1 Dock1 309081 NM_001143858 0016477 // cell migration // not recorded 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0051020 // GTPase binding // inferred from electronic annotation 1389103_at BM391005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391005 /DB_XREF=gi:18191058 /DB_XREF=UI-R-CN1-cjm-k-15-0-UI.s1 /CLONE=UI-R-CN1-cjm-k-15-0-UI /FEA=EST /CNT=9 /TID=Rn.9398.1 /TIER=Stack /STK=9 /UG=Rn.9398 /UG_TITLE=ESTs BM391005 GINS complex subunit 4 (Sld5 homolog) Gins4 290842 NM_001030027 0006260 // DNA replication // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389104_s_at BF388420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388420 /DB_XREF=gi:11373244 /DB_XREF=UI-R-BS2-bdc-c-06-0-UI.s1 /CLONE=UI-R-BS2-bdc-c-06-0-UI /FEA=EST /CNT=9 /TID=Rn.20396.1 /TIER=Stack /STK=9 /UG=Rn.20396 /UG_TITLE=ESTs BF388420 PR domain containing 2, with ZNF domain Prdm2 313678 NM_001077648 0006350 // transcription // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389105_at BG378140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378140 /DB_XREF=gi:13302612 /DB_XREF=UI-R-CV1-bvo-d-11-0-UI.s1 /CLONE=UI-R-CV1-bvo-d-11-0-UI /FEA=EST /CNT=9 /TID=Rn.66544.1 /TIER=Stack /STK=9 /UG=Rn.66544 /UG_TITLE=ESTs, Highly similar to 2205332A alpha dystroglycan (M.musculus) BG378140 dystroglycan 1 (dystrophin-associated glycoprotein 1) Dag1 114489 XM_001074892 /// XM_343483 0002011 // morphogenesis of an epithelial sheet // inferred from electronic annotation /// 0002011 // morphogenesis of an epithelial sheet // not recorded /// 0007016 // cytoskeletal anchoring at plasma membrane // inferred from electronic annotation /// 0007016 // cytoskeletal anchoring at plasma membrane // not recorded /// 0016340 // calcium-dependent cell-matrix adhesion // inferred from mutant phenotype /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // not recorded /// 0034453 // microtubule anchoring // inferred from electronic annotation /// 0034453 // microtubule anchoring // not recorded /// 0043409 // negative regulation of MAPKKK cascade // inferred from electronic annotation /// 0043409 // negative regulation of MAPKKK cascade // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0051898 // negative regulation of protein kinase B signaling cascade // inferred from electronic annotation /// 0051898 // negative regulation of protein kinase B signaling cascade // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // inferred from electronic annotation /// 0060441 // epithelial tube branching involved in lung morphogenesis // not recorded /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // not recorded 0005604 // basement membrane // inferred from mutant phenotype /// 0005604 // basement membrane // not recorded /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005626 // insoluble fraction // inferred from electronic annotation /// 0005626 // insoluble fraction // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0016010 // dystrophin-associated glycoprotein complex // not recorded /// 0016010 // dystrophin-associated glycoprotein complex // inferred from electronic annotation /// 0016011 // dystroglycan complex // inferred from electronic annotation /// 0016011 // dystroglycan complex // not recorded /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030175 // filopodium // inferred from electronic annotation /// 0030175 // filopodium // not recorded /// 0042383 // sarcolemma // inferred from direct assay /// 0042383 // sarcolemma // not recorded /// 0042383 // sarcolemma // inferred from electronic annotation /// 0043034 // costamere // inferred from direct assay /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded /// 0070938 // contractile ring // inferred from electronic annotation /// 0070938 // contractile ring // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008307 // structural constituent of muscle // inferred from electronic annotation /// 0008307 // structural constituent of muscle // not recorded /// 0015631 // tubulin binding // inferred from electronic annotation /// 0015631 // tubulin binding // not recorded /// 0017166 // vinculin binding // inferred from electronic annotation /// 0017166 // vinculin binding // not recorded /// 0051393 // alpha-actinin binding // inferred from electronic annotation /// 0051393 // alpha-actinin binding // not recorded /// 0051635 // bacterial cell surface binding // inferred from mutant phenotype 1389106_at AI407555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407555 /DB_XREF=gi:4251059 /DB_XREF=EST235845 /CLONE=ROVDZ11 /FEA=EST /CNT=9 /TID=Rn.29201.1 /TIER=Stack /STK=9 /UG=Rn.29201 /UG_TITLE=ESTs AI407555 F-box and WD repeat domain containing 9 Fbxw9 288921 NM_001081634 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389107_at AI008974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008974 /DB_XREF=gi:3222806 /DB_XREF=EST203425 /CLONE=REMBG47 /FEA=EST /CNT=9 /TID=Rn.10293.3 /TIER=Stack /STK=9 /UG=Rn.10293 /LL=116565 /UG_GENE=Lrpap1 /UG_TITLE=low density lipoprotein receptor-related protein associated protein 1 AI008974 cingulin-like 1 Cgnl1 315795 NM_001108164 0015629 // actin cytoskeleton // not recorded /// 0016459 // myosin complex // inferred from electronic annotation /// 0043296 // apical junction complex // not recorded 0003774 // motor activity // inferred from electronic annotation 1389108_at AI710235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI710235 /DB_XREF=gi:5000011 /DB_XREF=UI-R-AF0-yd-h-01-0-UI.s1 /CLONE=UI-R-AF0-yd-h-01-0-UI /FEA=EST /CNT=9 /TID=Rn.18665.1 /TIER=Stack /STK=9 /UG=Rn.18665 /UG_TITLE=ESTs, Moderately similar to T43482 hypothetical protein DKFZp434F216.1 (H.sapiens) AI710235 1389109_at AI407351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407351 /DB_XREF=gi:4250855 /DB_XREF=EST235640 /CLONE=ROVED26 /FEA=EST /CNT=9 /TID=Rn.7533.1 /TIER=Stack /STK=9 /UG=Rn.7533 /UG_TITLE=ESTs AI407351 phosphatidylinositol-5-phosphate 4-kinase, type II, alpha Pip4k2a 116723 NM_053926 0046488 // phosphatidylinositol metabolic process // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016307 // phosphatidylinositol phosphate kinase activity // inferred from electronic annotation /// 0016309 // 1-phosphatidylinositol-5-phosphate 4-kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1389110_at AI639387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639387 /DB_XREF=gi:4700421 /DB_XREF=rx05135s /CLONE=rx05135 /FEA=EST /CNT=9 /TID=Rn.41455.1 /TIER=Stack /STK=9 /UG=Rn.41455 /UG_TITLE=ESTs, Highly similar to RT06_MOUSE Mitochondrial 28S ribosomal protein S6 (MRP-S6) (M.musculus) AI639387 mitochondrial ribosomal protein S6-like LOC100360017 100360017 XM_002724702 /// XM_002727874 0006412 // translation // inferred from electronic annotation 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0019843 // rRNA binding // inferred from electronic annotation 1389111_at BF396316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396316 /DB_XREF=gi:11381288 /DB_XREF=UI-R-BS2-bdw-g-04-0-UI.s1 /CLONE=UI-R-BS2-bdw-g-04-0-UI /FEA=EST /CNT=9 /TID=Rn.17462.1 /TIER=Stack /STK=9 /UG=Rn.17462 /UG_TITLE=ESTs BF396316 1389112_at AI011720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011720 /DB_XREF=gi:3225552 /DB_XREF=EST206171 /CLONE=ROVAZ31 /FEA=EST /CNT=9 /TID=Rn.24957.1 /TIER=Stack /STK=9 /UG=Rn.24957 /UG_TITLE=ESTs AI011720 naked cuticle homolog 1 (Drosophila) Nkd1 364952 NM_001108894 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389113_at AI598307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598307 /DB_XREF=gi:4607355 /DB_XREF=EST250010 /CLONE=REMDO07 /FEA=EST /CNT=9 /TID=Rn.9239.1 /TIER=Stack /STK=9 /UG=Rn.9239 /UG_TITLE=ESTs AI598307 solute carrier family 45, member 3 Slc45a3 304785 NM_001135868 0055085 // transmembrane transport // inferred from electronic annotation 1389114_at AW523874 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523874 /DB_XREF=gi:7166259 /DB_XREF=UI-R-BO0-aie-a-05-0-UI.s1 /CLONE=UI-R-BO0-aie-a-05-0-UI /FEA=EST /CNT=9 /TID=Rn.16112.1 /TIER=Stack /STK=9 /UG=Rn.16112 /UG_TITLE=ESTs, Weakly similar to SYBSR threonine synthase (EC 4.2.99.2) - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AW523874 threonine synthase-like 2 (S. cerevisiae) Thnsl2 297332 NM_001009658 0008152 // metabolic process // inferred from electronic annotation /// 0009088 // threonine biosynthetic process // inferred from electronic annotation /// 0009088 // threonine biosynthetic process // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004795 // threonine synthase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // not recorded 1389115_at AI716245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716245 /DB_XREF=gi:5033498 /DB_XREF=UI-R-Y0-abr-e-06-0-UI.s1 /CLONE=UI-R-Y0-abr-e-06-0-UI /FEA=EST /CNT=9 /TID=Rn.19832.1 /TIER=Stack /STK=9 /UG=Rn.19832 /UG_TITLE=ESTs, Weakly similar to plectin (Rattus norvegicus) (R.norvegicus) AI716245 envoplakin Evpl 303687 NM_001107066 0018149 // peptide cross-linking // inferred from electronic annotation /// 0018149 // peptide cross-linking // not recorded /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // not recorded 0001533 // cornified envelope // inferred from electronic annotation /// 0001533 // cornified envelope // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005198 // structural molecule activity // not recorded /// 0030674 // protein binding, bridging // inferred from electronic annotation /// 0030674 // protein binding, bridging // not recorded 1389116_at BE111884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111884 /DB_XREF=gi:8503989 /DB_XREF=UI-R-BS1-azu-b-04-0-UI.s1 /CLONE=UI-R-BS1-azu-b-04-0-UI /FEA=EST /CNT=9 /TID=Rn.20978.1 /TIER=Stack /STK=9 /UG=Rn.20978 /UG_TITLE=ESTs, Highly similar to MTR3_MOUSE MYOTUBULARIN-RELATED PROTEIN 3 (M.musculus) BE111884 myotubularin related protein 9 Mtmr9 282584 NM_001005761 0016311 // dephosphorylation // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0030234 // enzyme regulator activity // not recorded /// 0030234 // enzyme regulator activity // inferred from electronic annotation 1389117_at AW532161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532161 /DB_XREF=gi:7174575 /DB_XREF=UI-R-C4-alj-b-01-0-UI.s1 /CLONE=UI-R-C4-alj-b-01-0-UI /FEA=EST /CNT=9 /TID=Rn.27608.1 /TIER=Stack /STK=9 /UG=Rn.27608 /UG_TITLE=ESTs, Weakly similar to S38110 O-sialoglycoprotein endopeptidase homolog YKR038c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AW532161 O-sialoglycoprotein endopeptidase Osgep 290028 NM_001100510 0006508 // proteolysis // inferred from electronic annotation 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389118_s_at BM387197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387197 /DB_XREF=gi:18187250 /DB_XREF=UI-R-CN1-cji-p-09-0-UI.s1 /CLONE=UI-R-CN1-cji-p-09-0-UI /FEA=EST /CNT=9 /TID=Rn.40640.1 /TIER=Stack /STK=9 /UG=Rn.40640 /UG_TITLE=ESTs, Weakly similar to S113 MOUSE S100 CALCIUM-BINDING PROTEIN A13 (M.musculus) BM387197 similar to S100 calcium binding protein A14 LOC685385 685385 XM_001063574 /// XM_002725995 0005509 // calcium ion binding // inferred from electronic annotation 1389119_at AI105018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105018 /DB_XREF=gi:3709215 /DB_XREF=EST214307 /CLONE=RHECM56 /FEA=EST /CNT=9 /TID=Rn.27588.1 /TIER=Stack /STK=9 /UG=Rn.27588 /UG_TITLE=ESTs, Moderately similar to cardiac morphogenesis (Mus musculus) (M.musculus) AI105018 xin actin-binding repeat containing 1 Xirp1 316071 XM_001077697 /// XM_236702 0008285 // negative regulation of cell proliferation // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded /// 0045214 // sarcomere organization // not recorded /// 0055013 // cardiac muscle cell development // not recorded 0005886 // plasma membrane // not recorded /// 0005913 // cell-cell adherens junction // not recorded /// 0005916 // fascia adherens // not recorded /// 0014704 // intercalated disc // not recorded /// 0030054 // cell junction // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation 1389120_at BI291370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291370 /DB_XREF=gi:14950849 /DB_XREF=UI-R-CV2-cgp-c-09-0-UI.s1 /CLONE=UI-R-CV2-cgp-c-09-0-UI /FEA=EST /CNT=9 /TID=Rn.13759.1 /TIER=Stack /STK=9 /UG=Rn.13759 /UG_TITLE=ESTs BI291370 potassium voltage gated channel, Shaw-related subfamily, member 3 Kcnc3 117101 NM_053997 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1389121_at AA998771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998771 /DB_XREF=gi:4292163 /DB_XREF=UI-R-C0-im-b-11-0-UI.s1 /CLONE=UI-R-C0-im-b-11-0-UI /FEA=EST /CNT=9 /TID=Rn.13186.1 /TIER=Stack /STK=9 /UG=Rn.13186 /UG_TITLE=ESTs AA998771 1389122_at BI296748 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296748 /DB_XREF=gi:14961485 /DB_XREF=UI-R-CV2-cgv-g-12-0-UI.s1 /CLONE=UI-R-CV2-cgv-g-12-0-UI /FEA=EST /CNT=9 /TID=Rn.79920.1 /TIER=Stack /STK=9 /UG=Rn.79920 /UG_TITLE=ESTs, Highly similar to PYRG MOUSE CTP SYNTHASE (M.musculus) BI296748 1389123_at BE095824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095824 /DB_XREF=gi:8486755 /DB_XREF=UI-R-BU0-apb-a-04-0-UI.s1 /CLONE=UI-R-BU0-apb-a-04-0-UI /FEA=EST /CNT=20 /TID=Rn.7857.1 /TIER=Stack /STK=8 /UG=Rn.7857 /UG_TITLE=ESTs, Weakly similar to SY03 RAT SMALL INDUCIBLE CYTOKINE A3 PRECURSOR (R.norvegicus) BE095824 chemokine (C-C motif) ligand 6 Ccl6 287910 NM_001004202 0006915 // apoptosis // traceable author statement /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0060326 // cell chemotaxis // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from direct assay /// 0008009 // chemokine activity // inferred from electronic annotation /// 0031726 // CCR1 chemokine receptor binding // inferred by curator 1389124_at AI009814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009814 /DB_XREF=gi:3223646 /DB_XREF=EST204265 /CLONE=RLUBO78 /FEA=EST /CNT=32 /TID=Rn.17667.1 /TIER=Stack /STK=8 /UG=Rn.17667 /UG_TITLE=ESTs AI009814 ankyrin repeat domain 40 Ankrd40 690586 NM_001134699 1389125_at BI293704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293704 /DB_XREF=gi:14955455 /DB_XREF=UI-R-DK0-cdu-g-01-0-UI.s1 /CLONE=UI-R-DK0-cdu-g-01-0-UI /FEA=EST /CNT=25 /TID=Rn.3033.1 /TIER=Stack /STK=8 /UG=Rn.3033 /UG_TITLE=ESTs, Weakly similar to T32555 hypothetical protein F33D4.5 - Caenorhabditis elegans (C.elegans) BI293704 mitochondrial ribosomal protein L1 Mrpl1 289491 NM_001105997 0006396 // RNA processing // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006412 // translation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005762 // mitochondrial large ribosomal subunit // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // not recorded 1389126_at BG373580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373580 /DB_XREF=gi:13270117 /DB_XREF=UI-R-CV1-bse-e-02-0-UI.s1 /CLONE=UI-R-CV1-bse-e-02-0-UI /FEA=EST /CNT=17 /TID=Rn.2620.1 /TIER=Stack /STK=8 /UG=Rn.2620 /UG_TITLE=ESTs BG373580 coiled-coil-helix-coiled-coil-helix domain containing 1 Chchd1 361005 NM_001108369 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1389127_at BF552908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552908 /DB_XREF=gi:11662638 /DB_XREF=UI-R-C2-mz-f-01-0-UI.r1 /CLONE=UI-R-C2-mz-f-01-0-UI /FEA=EST /CNT=16 /TID=Rn.4238.1 /TIER=Stack /STK=8 /UG=Rn.4238 /UG_TITLE=ESTs BF552908 1389128_at AI146179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146179 /DB_XREF=gi:3667978 /DB_XREF=UI-R-BT0-qb-h-05-0-UI.s1 /CLONE=UI-R-BT0-qb-h-05-0-UI /FEA=EST /CNT=16 /TID=Rn.1515.1 /TIER=Stack /STK=8 /UG=Rn.1515 /UG_TITLE=ESTs, Weakly similar to FYVE zinc finger (Caenorhabditis elegans) (C.elegans) AI146179 WD repeat and FYVE domain containing 3 Wdfy3 305164 NM_001170551 /// XM_001060345 /// XM_001060403 /// XM_223196 0008152 // metabolic process // not recorded 0005635 // nuclear envelope // not recorded /// 0005737 // cytoplasm // not recorded /// 0005776 // autophagic vacuole // not recorded /// 0019898 // extrinsic to membrane // not recorded /// 0044444 // cytoplasmic part // not recorded 0003831 // beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005545 // phosphatidylinositol binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389129_at BF282876 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282876 /DB_XREF=gi:11213946 /DB_XREF=EST447467 /CLONE=RGIDU42 /FEA=EST /CNT=15 /TID=Rn.17377.1 /TIER=Stack /STK=8 /UG=Rn.17377 /UG_TITLE=ESTs, Highly similar to Y665_HUMAN HYPOTHETICAL PROTEIN KIAA0665 (H.sapiens) BF282876 2,4-dienoyl CoA reductase 2, peroxisomal /// RAB11 family interacting protein 3 (class II) Decr2 /// Rab11fip3 303002 /// 64461 NM_171996 /// XM_001062691 /// XM_002724662 /// XM_002727755 /// XM_220262 0000910 // cytokinesis // not recorded /// 0006183 // GTP biosynthetic process // inferred from electronic annotation /// 0006228 // UTP biosynthetic process // inferred from electronic annotation /// 0006241 // CTP biosynthetic process // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0032456 // endocytic recycling // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0030496 // midbody // not recorded /// 0032154 // cleavage furrow // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0055037 // recycling endosome // not recorded 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004550 // nucleoside diphosphate kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008670 // 2,4-dienoyl-CoA reductase (NADPH) activity // inferred from direct assay /// 0008670 // 2,4-dienoyl-CoA reductase (NADPH) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0017137 // Rab GTPase binding // not recorded /// 0030306 // ADP-ribosylation factor binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1389130_at AW525131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525131 /DB_XREF=gi:7167516 /DB_XREF=UI-R-BJ0p-aio-b-07-0-UI.s1 /CLONE=UI-R-BJ0p-aio-b-07-0-UI /FEA=EST /CNT=20 /TID=Rn.6892.1 /TIER=Stack /STK=8 /UG=Rn.6892 /UG_TITLE=ESTs, Highly similar to G02318 Ets transcription factor (H.sapiens) AW525131 E74-like factor 2 Elf2 361944 NM_001012181 /// NM_001033909 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1389131_at BF412799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412799 /DB_XREF=gi:11400788 /DB_XREF=UI-R-BT1-bnz-e-07-0-UI.s1 /CLONE=UI-R-BT1-bnz-e-07-0-UI /FEA=EST /CNT=16 /TID=Rn.24114.1 /TIER=Stack /STK=8 /UG=Rn.24114 /UG_TITLE=ESTs, Weakly similar to YQT3_CAEEL HYPOTHETICAL 42.0 KD PROTEIN F25B5.3 IN CHROMOSOME III (C.elegans) BF412799 cytosolic 5-nucleotidase III-like protein-like /// 5'-nucleotidase, cytosolic III-like LOC100364937 /// Nt5c3l 100364937 /// 360629 NM_001007723 /// XM_002724641 0009117 // nucleotide metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0008253 // 5'-nucleotidase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389132_at AW253339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253339 /DB_XREF=gi:6596930 /DB_XREF=UI-R-BJ0-adz-g-03-0-UI.s1 /CLONE=UI-R-BJ0-adz-g-03-0-UI /FEA=EST /CNT=15 /TID=Rn.11882.1 /TIER=Stack /STK=8 /UG=Rn.11882 /UG_TITLE=ESTs AW253339 huntingtin interacting protein 1 Hip1 192154 NM_001100475 0006897 // endocytosis // not recorded /// 0006897 // endocytosis // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from electronic annotation /// 0048260 // positive regulation of receptor-mediated endocytosis // not recorded /// 0048268 // clathrin coat assembly // inferred from direct assay /// 0048268 // clathrin coat assembly // not recorded /// 0048268 // clathrin coat assembly // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016021 // integral to membrane // traceable author statement /// 0030118 // clathrin coat // traceable author statement /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030276 // clathrin binding // inferred from direct assay /// 0030276 // clathrin binding // not recorded /// 0030276 // clathrin binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // not recorded 1389133_at AI104870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104870 /DB_XREF=gi:3705048 /DB_XREF=EST214159 /CLONE=RHECK61 /FEA=EST /CNT=14 /TID=Rn.7189.1 /TIER=Stack /STK=8 /UG=Rn.7189 /UG_TITLE=ESTs, Weakly similar to ZC395.3.p (Caenorhabditis elegans) (C.elegans) AI104870 solute carrier family 30 (zinc transporter), member 6 Slc30a6 298786 NM_001106708 0006812 // cation transport // inferred from electronic annotation /// 0006829 // zinc ion transport // not recorded /// 0006829 // zinc ion transport // inferred from electronic annotation /// 0006895 // Golgi to endosome transport // not recorded /// 0006895 // Golgi to endosome transport // inferred from electronic annotation /// 0015674 // di-, tri-valent inorganic cation transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0071577 // zinc ion transmembrane transport // not recorded 0000139 // Golgi membrane // not recorded /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005385 // zinc ion transmembrane transporter activity // not recorded /// 0005385 // zinc ion transmembrane transporter activity // inferred from electronic annotation /// 0008324 // cation transmembrane transporter activity // inferred from electronic annotation 1389134_at BF551369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551369 /DB_XREF=gi:11661099 /DB_XREF=UI-R-C0-io-b-01-0-UI.r1 /CLONE=UI-R-C0-io-b-01-0-UI /FEA=EST /CNT=14 /TID=Rn.3805.1 /TIER=Stack /STK=8 /UG=Rn.3805 /UG_TITLE=ESTs BF551369 1389135_at AW140637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW140637 /DB_XREF=gi:6160387 /DB_XREF=EST290628 /CLONE=RGIAN67 /FEA=EST /CNT=14 /TID=Rn.13775.1 /TIER=Stack /STK=8 /UG=Rn.13775 /UG_TITLE=ESTs, Weakly similar to PYRG MOUSE CTP SYNTHASE (M.musculus) AW140637 CTP synthase II Ctps2 619580 NM_001034998 0006221 // pyrimidine nucleotide biosynthetic process // inferred from electronic annotation /// 0006541 // glutamine metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003883 // CTP synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1389136_at AI406280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406280 /DB_XREF=gi:4249784 /DB_XREF=EST234566 /CLONE=RBRDL86 /FEA=EST /CNT=21 /TID=Rn.6691.1 /TIER=Stack /STK=8 /UG=Rn.6691 /UG_TITLE=ESTs, Highly similar to P52K_HUMAN 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE (P58IPK-INTERACTING PROTEIN) (58 KDA INTERFERON-INDUCED PROTEIN KINASE-INTERACTING PROTEIN) (P52RIPK) (DEATH ASSOCIATED PROTEIN 4) (H.sapiens) AI406280 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) Prkrir 308845 NM_001191630 /// XM_001065056 /// XM_218949 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1389137_at AA957183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957183 /DB_XREF=gi:4277074 /DB_XREF=UI-R-E1-fp-f-07-0-UI.s1 /CLONE=UI-R-E1-fp-f-07-0-UI /FEA=EST /CNT=18 /TID=Rn.19142.1 /TIER=Stack /STK=8 /UG=Rn.19142 /UG_TITLE=ESTs AA957183 Citron Cit 83620 NM_001029911 0000070 // mitotic sister chromatid segregation // not recorded /// 0000070 // mitotic sister chromatid segregation // inferred from electronic annotation /// 0000086 // G2/M transition of mitotic cell cycle // inferred from mutant phenotype /// 0000086 // G2/M transition of mitotic cell cycle // non-traceable author statement /// 0000910 // cytokinesis // not recorded /// 0000910 // cytokinesis // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007030 // Golgi organization // inferred from mutant phenotype /// 0007067 // mitosis // not recorded /// 0007067 // mitosis // inferred from electronic annotation /// 0007091 // mitotic metaphase/anaphase transition // not recorded /// 0007091 // mitotic metaphase/anaphase transition // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008064 // regulation of actin polymerization or depolymerization // inferred from direct assay /// 0016310 // phosphorylation // not recorded /// 0016358 // dendrite development // not recorded /// 0016358 // dendrite development // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from mutant phenotype /// 0048699 // generation of neurons // not recorded /// 0048699 // generation of neurons // inferred from electronic annotation /// 0050774 // negative regulation of dendrite morphogenesis // not recorded /// 0050774 // negative regulation of dendrite morphogenesis // inferred from electronic annotation /// 0051726 // regulation of cell cycle // non-traceable author statement 0001726 // ruffle // not recorded /// 0001726 // ruffle // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005773 // vacuole // not recorded /// 0005773 // vacuole // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from mutant phenotype /// 0015629 // actin cytoskeleton // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation 1389138_at AA945574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945574 /DB_XREF=gi:3105490 /DB_XREF=EST201073 /CLONE=RLIAP19 /FEA=EST /CNT=15 /TID=Rn.7877.1 /TIER=Stack /STK=8 /UG=Rn.7877 /UG_TITLE=ESTs AA945574 1389139_at BG665007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665007 /DB_XREF=gi:13886929 /DB_XREF=DRABXA09 /CLONE=DRABXA09 /FEA=EST /CNT=15 /TID=Rn.17892.1 /TIER=Stack /STK=8 /UG=Rn.17892 /UG_TITLE=ESTs BG665007 tetratricopeptide repeat domain 15 Ttc15 314013 XM_001071807 /// XM_234029 0005488 // binding // inferred from electronic annotation 1389140_at AI172437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172437 /DB_XREF=gi:3712477 /DB_XREF=EST218445 /CLONE=RMUBZ59 /FEA=EST /CNT=15 /TID=Rn.7939.1 /TIER=Stack /STK=8 /UG=Rn.7939 /UG_TITLE=ESTs, Highly similar to SPC1_HUMAN MICROSOMAL SIGNAL PEPTIDASE 25 KDA SUBUNIT (H.sapiens) AI172437 signal peptidase complex subunit 2 homolog (S. cerevisiae) Spcs2 293142 NM_001191601 /// XM_001066421 /// XM_214994 0006465 // signal peptide processing // inferred from electronic annotation 0005787 // signal peptidase complex // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008233 // peptidase activity // inferred from electronic annotation 1389141_at BF288111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288111 /DB_XREF=gi:11219181 /DB_XREF=EST452702 /CLONE=RGIGP65 /FEA=EST /CNT=14 /TID=Rn.13505.1 /TIER=Stack /STK=8 /UG=Rn.13505 /UG_TITLE=ESTs, Highly similar to ORIGIN RECOGNITION COMPLEX PROTEIN, SUBUNIT 2 (M.musculus) BF288111 origin recognition complex, subunit 2-like (yeast) Orc2l 301430 NM_001012003 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded 0000785 // chromatin // not recorded /// 0000785 // chromatin // inferred from electronic annotation /// 0000792 // heterochromatin // inferred from electronic annotation /// 0000792 // heterochromatin // not recorded /// 0000808 // origin recognition complex // inferred from electronic annotation /// 0000808 // origin recognition complex // not recorded /// 0000939 // condensed chromosome inner kinetochore // inferred from electronic annotation /// 0000939 // condensed chromosome inner kinetochore // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005664 // nuclear origin of replication recognition complex // inferred from electronic annotation /// 0005664 // nuclear origin of replication recognition complex // not recorded 0003688 // DNA replication origin binding // inferred from electronic annotation /// 0003688 // DNA replication origin binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389142_at AI013361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013361 /DB_XREF=gi:3227417 /DB_XREF=EST208036 /CLONE=RSPBK02 /FEA=EST /CNT=14 /TID=Rn.1416.1 /TIER=Stack /STK=8 /UG=Rn.1416 /UG_TITLE=ESTs, Weakly similar to T20522 hypothetical protein F02H6.5 - Caenorhabditis elegans (C.elegans) AI013361 sulfide quinone reductase-like (yeast) Sqrdl 691966 NM_001047913 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation 1389143_at BF288139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288139 /DB_XREF=gi:11219209 /DB_XREF=EST452730 /CLONE=RGIGP96 /FEA=EST /CNT=14 /TID=Rn.12805.1 /TIER=Stack /STK=8 /UG=Rn.12805 /UG_TITLE=ESTs BF288139 phosphoinositide-3-kinase, catalytic, alpha polypeptide Pik3ca 170911 NM_133399 /// XM_001059350 /// XM_001063573 0006006 // glucose metabolic process // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0040014 // regulation of multicellular organism growth // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043491 // protein kinase B signaling cascade // not recorded /// 0046854 // phosphoinositide phosphorylation // inferred from direct assay /// 0046854 // phosphoinositide phosphorylation // not recorded /// 0046854 // phosphoinositide phosphorylation // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation 0005829 // cytosol // not recorded /// 0005942 // phosphoinositide 3-kinase complex // inferred from direct assay /// 0005942 // phosphoinositide 3-kinase complex // not recorded /// 0030027 // lamellipodium // not recorded 0004428 // inositol or phosphatidylinositol kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from direct assay /// 0016303 // 1-phosphatidylinositol-3-kinase activity // not recorded /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0043560 // insulin receptor substrate binding // not recorded /// 0046934 // phosphatidylinositol-4,5-bisphosphate 3-kinase activity // not recorded 1389144_at AA818759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818759 /DB_XREF=gi:4227436 /DB_XREF=UI-R-A0-ay-b-06-0-UI.s1 /CLONE=UI-R-A0-ay-b-06-0-UI /FEA=EST /CNT=13 /TID=Rn.40372.1 /TIER=Stack /STK=8 /UG=Rn.40372 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) AA818759 COMM domain containing 6 Commd6 498559 NM_001109105 0005515 // protein binding // not recorded 1389145_at D86683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D86683 /DB_XREF=gi:1549187 /DB_XREF=D86683 /FEA=EST /CNT=13 /TID=Rn.17464.1 /TIER=Stack /STK=8 /UG=Rn.17464 /UG_TITLE=ESTs, Weakly similar to T46465 hypothetical protein DKFZp434A0530.1 (H.sapiens) D86683 CDC42 effector protein (Rho GTPase binding) 2 Cdc42ep2 309175 NM_001009689 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0030838 // positive regulation of actin filament polymerization // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // not recorded /// 0031274 // positive regulation of pseudopodium assembly // inferred from electronic annotation /// 0031274 // positive regulation of pseudopodium assembly // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0001515 // opioid peptide activity // inferred from electronic annotation /// 0001515 // opioid peptide activity // not recorded /// 0005100 // Rho GTPase activator activity // inferred from electronic annotation /// 0005100 // Rho GTPase activator activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017049 // GTP-Rho binding // inferred from electronic annotation /// 0017049 // GTP-Rho binding // not recorded 1389146_at BF283267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283267 /DB_XREF=gi:11214337 /DB_XREF=EST447858 /CLONE=RGIDZ55 /FEA=EST /CNT=18 /TID=Rn.19929.1 /TIER=Stack /STK=8 /UG=Rn.19929 /UG_TITLE=ESTs, Weakly similar to T08666 hypothetical protein DKFZp547N0510.1 (H.sapiens) BF283267 family with sequence similarity 107, member B Fam107b 498796 NM_001025034 1389147_at BE116020 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116020 /DB_XREF=gi:8508125 /DB_XREF=UI-R-BS1-axy-e-11-0-UI.s1 /CLONE=UI-R-BS1-axy-e-11-0-UI /FEA=EST /CNT=16 /TID=Rn.16536.1 /TIER=Stack /STK=8 /UG=Rn.16536 /UG_TITLE=ESTs BE116020 1389148_at AW254686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254686 /DB_XREF=gi:6598277 /DB_XREF=UI-R-BJ0-adu-e-09-0-UI.s1 /CLONE=UI-R-BJ0-adu-e-09-0-UI /FEA=EST /CNT=14 /TID=Rn.33695.1 /TIER=Stack /STK=8 /UG=Rn.33695 /UG_TITLE=ESTs AW254686 apolipoprotein O-like Apool 317191 NM_001014105 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded 1389149_at BM389321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389321 /DB_XREF=gi:18189374 /DB_XREF=UI-R-DZ0-cko-l-16-0-UI.s1 /CLONE=UI-R-DZ0-cko-l-16-0-UI /FEA=EST /CNT=13 /TID=Rn.6126.1 /TIER=Stack /STK=8 /UG=Rn.6126 /UG_TITLE=ESTs BM389321 Eyes absent homolog 3 (Drosophila) Eya3 313027 NM_001107910 0006302 // double-strand break repair // not recorded /// 0006470 // protein dephosphorylation // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0010212 // response to ionizing radiation // not recorded /// 0016576 // histone dephosphorylation // not recorded /// 0045739 // positive regulation of DNA repair // not recorded 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded 0003682 // chromatin binding // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // not recorded 1389150_at AW524559 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524559 /DB_XREF=gi:7166944 /DB_XREF=UI-R-BO0-ahz-g-12-0-UI.s1 /CLONE=UI-R-BO0-ahz-g-12-0-UI /FEA=EST /CNT=13 /TID=Rn.6421.1 /TIER=Stack /STK=8 /UG=Rn.6421 /UG_TITLE=ESTs AW524559 1389151_at AI103440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103440 /DB_XREF=gi:4134169 /DB_XREF=EST212729 /CLONE=REMCB92 /FEA=EST /CNT=13 /TID=Rn.904.1 /TIER=Stack /STK=8 /UG=Rn.904 /UG_TITLE=ESTs AI103440 a disintegrin and metallopeptidase domain 19 (meltrin beta) Adam19 303068 NM_001160228 0006508 // proteolysis // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0007507 // heart development // not recorded 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1389152_at AI412984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412984 /DB_XREF=gi:4256488 /DB_XREF=EST241284 /CLONE=RBREC80 /FEA=EST /CNT=13 /TID=Rn.6557.1 /TIER=Stack /STK=8 /UG=Rn.6557 /UG_TITLE=ESTs AI412984 zinc finger, FYVE domain containing 27 Zfyve27 309376 NM_199104 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389153_at BI296087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296087 /DB_XREF=gi:14960178 /DB_XREF=UI-R-DK0-cew-b-11-0-UI.s1 /CLONE=UI-R-DK0-cew-b-11-0-UI /FEA=EST /CNT=13 /TID=Rn.7370.1 /TIER=Stack /STK=8 /UG=Rn.7370 /UG_TITLE=ESTs BI296087 1389154_at AW524453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524453 /DB_XREF=gi:7166838 /DB_XREF=UI-R-BO0-ahx-f-02-0-UI.s1 /CLONE=UI-R-BO0-ahx-f-02-0-UI /FEA=EST /CNT=13 /TID=Rn.25547.1 /TIER=Stack /STK=8 /UG=Rn.25547 /UG_TITLE=ESTs, Weakly similar to T23655 hypothetical protein M01F1.3 - Caenorhabditis elegans (C.elegans) AW524453 lipoic acid synthetase Lias 305348 NM_001012037 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009105 // lipoic acid biosynthetic process // not recorded /// 0009105 // lipoic acid biosynthetic process // inferred from electronic annotation /// 0009107 // lipoate biosynthetic process // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016992 // lipoate synthase activity // inferred from electronic annotation /// 0017140 // lipoic acid synthase activity // inferred from electronic annotation /// 0017140 // lipoic acid synthase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 1389155_at AA943139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943139 /DB_XREF=gi:3103055 /DB_XREF=EST198638 /CLONE=RBRAF53 /FEA=EST /CNT=12 /TID=Rn.17266.1 /TIER=Stack /STK=8 /UG=Rn.17266 /UG_TITLE=ESTs AA943139 downstream of Stk11 Dos 314622 NM_001108070 1389156_at BM384589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384589 /DB_XREF=gi:18184642 /DB_XREF=UI-R-DY0-ckl-i-05-0-UI.s1 /CLONE=UI-R-DY0-ckl-i-05-0-UI /FEA=EST /CNT=12 /TID=Rn.822.1 /TIER=Stack /STK=8 /UG=Rn.822 /UG_TITLE=ESTs, Weakly similar to C13F10.2.p (Caenorhabditis elegans) (C.elegans) BM384589 hypothetical protein LOC498606 LOC498606 498606 NM_001025143 0005515 // protein binding // inferred from electronic annotation 1389157_at BI275583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275583 /DB_XREF=gi:14919636 /DB_XREF=UI-R-CW0-bwk-a-12-0-UI.s1 /CLONE=UI-R-CW0-bwk-a-12-0-UI /FEA=EST /CNT=12 /TID=Rn.13015.1 /TIER=Stack /STK=8 /UG=Rn.13015 /UG_TITLE=ESTs BI275583 CDC42 effector protein (Rho GTPase binding) 1 Cdc42ep1 315121 NM_001079700 0007266 // Rho protein signal transduction // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // not recorded /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0031274 // positive regulation of pseudopodium assembly // inferred from electronic annotation /// 0031274 // positive regulation of pseudopodium assembly // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389158_at BE329196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329196 /DB_XREF=gi:9202972 /DB_XREF=hq38b04.x1 /CLONE=IMAGE:3121615 /FEA=EST /CNT=12 /TID=Rn.22482.1 /TIER=Stack /STK=8 /UG=Rn.22482 /UG_TITLE=ESTs BE329196 1389159_at BM385437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385437 /DB_XREF=gi:18185490 /DB_XREF=UI-R-CN1-clv-j-16-0-UI.s1 /CLONE=UI-R-CN1-clv-j-16-0-UI /FEA=EST /CNT=12 /TID=Rn.16626.1 /TIER=Stack /STK=8 /UG=Rn.16626 /UG_TITLE=ESTs BM385437 1389160_at AI230287 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230287 /DB_XREF=gi:3814174 /DB_XREF=EST226982 /CLONE=REMCU62 /FEA=EST /CNT=12 /TID=Rn.12724.1 /TIER=Stack /STK=8 /UG=Rn.12724 /UG_TITLE=ESTs AI230287 erythroid associated factor Eraf 293522 NM_001106299 0006457 // protein folding // inferred from electronic annotation /// 0020027 // hemoglobin metabolic process // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0050821 // protein stabilization // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030492 // hemoglobin binding // inferred from electronic annotation 1389161_at AW144193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144193 /DB_XREF=gi:6164092 /DB_XREF=EST294489 /CLONE=RGICK79 /FEA=EST /CNT=12 /TID=Rn.8238.1 /TIER=Stack /STK=8 /UG=Rn.8238 /UG_TITLE=ESTs AW144193 1389162_at BI277328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277328 /DB_XREF=gi:14923107 /DB_XREF=UI-R-CY0-bxz-f-02-0-UI.s1 /CLONE=UI-R-CY0-bxz-f-02-0-UI /FEA=EST /CNT=16 /TID=Rn.11703.1 /TIER=Stack /STK=8 /UG=Rn.11703 /UG_TITLE=ESTs, Weakly similar to T24151 hypothetical protein R10H10.1 - Caenorhabditis elegans (C.elegans) BI277328 NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) Nfu1 297416 NM_001106606 0016226 // iron-sulfur cluster assembly // inferred from electronic annotation /// 0016226 // iron-sulfur cluster assembly // not recorded 0005634 // nucleus // not recorded /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded 0005506 // iron ion binding // inferred from electronic annotation /// 0005506 // iron ion binding // not recorded /// 0005515 // protein binding // not recorded /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // not recorded 1389163_at BG372673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372673 /DB_XREF=gi:13269210 /DB_XREF=UI-R-CV1-brz-b-12-0-UI.s1 /CLONE=UI-R-CV1-brz-b-12-0-UI /FEA=EST /CNT=15 /TID=Rn.4118.1 /TIER=Stack /STK=8 /UG=Rn.4118 /UG_TITLE=ESTs, Highly similar to HT2A_HUMAN ZINC-FINGER PROTEIN HT2A (H.sapiens) BG372673 tripartite motif-containing 32 Trim32 313264 NM_001012103 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0045444 // fat cell differentiation // not recorded /// 0045732 // positive regulation of protein catabolic process // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005863 // striated muscle myosin thick filament // inferred from electronic annotation /// 0005863 // striated muscle myosin thick filament // not recorded 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017022 // myosin binding // inferred from electronic annotation /// 0017022 // myosin binding // not recorded /// 0031369 // translation initiation factor binding // inferred from electronic annotation /// 0031369 // translation initiation factor binding // not recorded /// 0043130 // ubiquitin binding // inferred from electronic annotation /// 0043130 // ubiquitin binding // not recorded /// 0043621 // protein self-association // inferred from electronic annotation /// 0043621 // protein self-association // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1389164_at BI295026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295026 /DB_XREF=gi:14958058 /DB_XREF=UI-R-DK0-cee-h-07-0-UI.s1 /CLONE=UI-R-DK0-cee-h-07-0-UI /FEA=EST /CNT=14 /TID=Rn.7486.1 /TIER=Stack /STK=8 /UG=Rn.7486 /UG_TITLE=ESTs BI295026 hect domain and RLD 3 Herc3 362377 NM_001108631 0006464 // protein modification process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1389165_at AI178292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178292 /DB_XREF=gi:3728930 /DB_XREF=EST221960 /CLONE=RPLCO60 /FEA=EST /CNT=14 /TID=Rn.2530.1 /TIER=Stack /STK=8 /UG=Rn.2530 /UG_TITLE=ESTs, Weakly similar to COPP RAT COATOMER BETA SUBUNIT (R.norvegicus) AI178292 WD repeat domain 26 Wdr26 498301 NM_001109081 0005737 // cytoplasm // not recorded 1389166_at BF403998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403998 /DB_XREF=gi:11391973 /DB_XREF=UI-R-CA1-bjd-e-08-0-UI.s1 /CLONE=UI-R-CA1-bjd-e-08-0-UI /FEA=EST /CNT=14 /TID=Rn.46320.1 /TIER=Stack /STK=8 /UG=Rn.46320 /UG_TITLE=ESTs, Weakly similar to KIP1_RAT DNA-PKCS INTERACTING PROTEIN (KINASE INTERACTING PROTEIN) (KIP) (CALCIUM AND INTEGRIN-BINDING PROTEIN) (CIB) (R.norvegicus) BF403998 calcium and integrin binding family member 2 Cib2 300719 NM_001015010 0005509 // calcium ion binding // inferred from electronic annotation 1389167_at BI275749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275749 /DB_XREF=gi:14919968 /DB_XREF=UI-R-CX0-bxg-c-01-0-UI.s1 /CLONE=UI-R-CX0-bxg-c-01-0-UI /FEA=EST /CNT=14 /TID=Rn.37098.1 /TIER=Stack /STK=8 /UG=Rn.37098 /UG_TITLE=ESTs, Highly similar to C38637 Ras inhibitor (H.sapiens) BI275749 mitogen-activated protein kinase associated protein 1 Mapkap1 296648 NM_001011964 0006950 // response to stress // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 1389168_at AI412239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412239 /DB_XREF=gi:4255743 /DB_XREF=EST240534 /CLONE=RKIEK86 /FEA=EST /CNT=13 /TID=Rn.8839.1 /TIER=Stack /STK=8 /UG=Rn.8839 /UG_TITLE=ESTs AI412239 McKusick-Kaufman syndrome Mkks 311456 NM_001008353 0007286 // spermatid development // inferred from electronic annotation /// 0007286 // spermatid development // not recorded /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0007608 // sensory perception of smell // not recorded /// 0009296 // flagellum assembly // inferred from electronic annotation /// 0009296 // flagellum assembly // not recorded /// 0021756 // striatum development // inferred from electronic annotation /// 0021756 // striatum development // not recorded /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0021987 // cerebral cortex development // not recorded /// 0035058 // sensory cilium assembly // inferred from electronic annotation /// 0035058 // sensory cilium assembly // not recorded /// 0035176 // social behavior // inferred from electronic annotation /// 0035176 // social behavior // not recorded /// 0042384 // cilium assembly // not recorded /// 0044267 // cellular protein metabolic process // inferred from electronic annotation /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045444 // fat cell differentiation // not recorded /// 0045494 // photoreceptor cell maintenance // inferred from electronic annotation /// 0045494 // photoreceptor cell maintenance // not recorded /// 0048854 // brain morphogenesis // inferred from electronic annotation /// 0048854 // brain morphogenesis // not recorded /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // inferred from electronic annotation /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // not recorded /// 0060271 // cilium morphogenesis // inferred from electronic annotation /// 0060271 // cilium morphogenesis // not recorded /// 0060296 // regulation of cilium beat frequency involved in ciliary motility // inferred from electronic annotation /// 0060296 // regulation of cilium beat frequency involved in ciliary motility // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0031514 // motile secondary cilium // inferred from electronic annotation /// 0031514 // motile secondary cilium // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1389169_at AA944158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944158 /DB_XREF=gi:3104074 /DB_XREF=EST199657 /CLONE=REMAD07 /FEA=EST /CNT=12 /TID=Rn.7685.1 /TIER=Stack /STK=8 /UG=Rn.7685 /UG_TITLE=ESTs AA944158 progesterone receptor membrane component 2 Pgrmc2 361940 NM_001008374 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005496 // steroid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation 1389170_at BF283754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283754 /DB_XREF=gi:11214824 /DB_XREF=EST448345 /CLONE=RGIEG43 /FEA=EST /CNT=12 /TID=Rn.6825.1 /TIER=Stack /STK=8 /UG=Rn.6825 /UG_TITLE=ESTs BF283754 caspase 7 Casp7 64026 NM_022260 0001836 // release of cytochrome c from mitochondria // inferred from electronic annotation /// 0001836 // release of cytochrome c from mitochondria // not recorded /// 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptosis // traceable author statement /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0009411 // response to UV // inferred from electronic annotation /// 0009411 // response to UV // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004197 // cysteine-type endopeptidase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008234 // cysteine-type peptidase activity // inferred from direct assay /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1389171_at AI104326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104326 /DB_XREF=gi:3708698 /DB_XREF=EST213615 /CLONE=RHECA39 /FEA=EST /CNT=12 /TID=Rn.22458.1 /TIER=Stack /STK=8 /UG=Rn.22458 /UG_TITLE=ESTs AI104326 transmembrane protein 38a Tmem38a 306327 NM_001100175 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0015672 // monovalent inorganic cation transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0033017 // sarcoplasmic reticulum membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation 1389172_at AI179391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179391 /DB_XREF=gi:4135152 /DB_XREF=EST223092 /CLONE=RSPCG58 /FEA=EST /CNT=11 /TID=Rn.23681.1 /TIER=Stack /STK=8 /UG=Rn.23681 /UG_TITLE=ESTs AI179391 1389173_at AI411575 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411575 /DB_XREF=gi:4255079 /DB_XREF=EST239869 /CLONE=ROVET11 /FEA=EST /CNT=11 /TID=Rn.7967.1 /TIER=Stack /STK=8 /UG=Rn.7967 /UG_TITLE=ESTs, Highly similar to S26650 DNA-binding protein 5 (H.sapiens) AI411575 Son DNA binding protein Son 304092 NM_001170327 /// NM_001170328 0006916 // anti-apoptosis // not recorded 0005622 // intracellular // inferred from electronic annotation 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0050733 // RS domain binding // not recorded 1389174_s_at AI234857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234857 /DB_XREF=gi:3828363 /DB_XREF=EST231419 /CLONE=ROVCI69 /FEA=EST /CNT=11 /TID=Rn.9393.1 /TIER=Stack /STK=8 /UG=Rn.9393 /UG_TITLE=ESTs, Highly similar to T2D5 RAT TRANSCRIPTION INITIATION FACTOR TFIID 70 KD SUBUNIT (R.norvegicus) AI234857 TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor Taf6 288533 NM_001044225 0006350 // transcription // inferred from electronic annotation /// 0006352 // transcription initiation // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // not recorded /// 0051090 // regulation of transcription factor activity // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005669 // transcription factor TFIID complex // inferred from electronic annotation /// 0005669 // transcription factor TFIID complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0033276 // transcription factor TFTC complex // inferred from electronic annotation /// 0033276 // transcription factor TFTC complex // not recorded /// 0071339 // MLL1 complex // not recorded /// 0071339 // MLL1 complex // inferred from sequence or structural similarity /// 0071339 // MLL1 complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016986 // transcription initiation factor activity // inferred from electronic annotation /// 0016986 // transcription initiation factor activity // not recorded 1389175_at AA956953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956953 /DB_XREF=gi:4239427 /DB_XREF=UI-R-E1-fl-e-11-0-UI.s1 /CLONE=UI-R-E1-fl-e-11-0-UI /FEA=EST /CNT=11 /TID=Rn.9138.1 /TIER=Stack /STK=8 /UG=Rn.9138 /UG_TITLE=ESTs AA956953 Wolf-Hirschhorn syndrome candidate 2 (human) Whsc2 305455 NM_001008339 0005654 // nucleoplasm // not recorded 1389176_at BF282674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282674 /DB_XREF=gi:11213744 /DB_XREF=EST447265 /CLONE=RGIDR54 /FEA=EST /CNT=11 /TID=Rn.2410.1 /TIER=Stack /STK=8 /UG=Rn.2410 /UG_TITLE=ESTs, Moderately similar to T46372 hypothetical protein DKFZp434P1818.1 (H.sapiens) BF282674 inositol polyphosphate-5-phosphatase F Inpp5f 309008 NM_001107554 1389177_at AI598971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598971 /DB_XREF=gi:4608019 /DB_XREF=EST250674 /CLONE=REMDY91 /FEA=EST /CNT=11 /TID=Rn.17238.1 /TIER=Stack /STK=8 /UG=Rn.17238 /UG_TITLE=ESTs AI598971 PERP, TP53 apoptosis effector Perp 292949 NM_001106265 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1389178_at BE329043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329043 /DB_XREF=gi:9202819 /DB_XREF=hq36a08.x1 /CLONE=IMAGE:3121430 /FEA=EST /CNT=11 /TID=Rn.1278.1 /TIER=Stack /STK=8 /UG=Rn.1278 /UG_TITLE=ESTs BE329043 neugrin, neurite outgrowth associated Ngrn 499191 NM_001033900 /// NR_028055 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 1389179_at BF284899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284899 /DB_XREF=gi:11215969 /DB_XREF=EST449490 /CLONE=RGIEX56 /FEA=EST /CNT=11 /TID=Rn.8171.1 /TIER=Stack /STK=8 /UG=Rn.8171 /UG_TITLE=ESTs, Highly similar to CIDA_MOUSE CELL DEATH ACTIVATOR CIDE-A (CELL DEATH-INDUCING DFFA-LIKE EFFECTOR A) (M.musculus) BF284899 cell death-inducing DFFA-like effector a Cidea 291541 NM_001170467 0001659 // temperature homeostasis // not recorded /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // not recorded /// 0006629 // lipid metabolic process // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0008219 // cell death // not recorded /// 0010890 // positive regulation of sequestering of triglyceride // not recorded /// 0019915 // lipid storage // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0032720 // negative regulation of tumor necrosis factor production // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0050710 // negative regulation of cytokine secretion // not recorded /// 0050995 // negative regulation of lipid catabolic process // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005740 // mitochondrial envelope // not recorded /// 0005811 // lipid particle // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1389180_at AI175035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175035 /DB_XREF=gi:3725673 /DB_XREF=EST218553 /CLONE=RMUCB35 /FEA=EST /CNT=10 /TID=Rn.6488.1 /TIER=Stack /STK=8 /UG=Rn.6488 /UG_TITLE=ESTs AI175035 1389181_at BM389650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389650 /DB_XREF=gi:18189703 /DB_XREF=UI-R-CN1-cjo-k-13-0-UI.s1 /CLONE=UI-R-CN1-cjo-k-13-0-UI /FEA=EST /CNT=10 /TID=Rn.41685.1 /TIER=Stack /STK=8 /UG=Rn.41685 /UG_TITLE=ESTs BM389650 1389182_at AI603132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI603132 /DB_XREF=gi:4612293 /DB_XREF=UI-R-AE0-xg-c-10-0-UI.s1 /CLONE=UI-R-AE0-xg-c-10-0-UI /FEA=EST /CNT=10 /TID=Rn.14569.1 /TIER=Stack /STK=8 /UG=Rn.14569 /UG_TITLE=ESTs, Weakly similar to T50633 hypothetical protein DKFZp762F1811.1 (H.sapiens) AI603132 similar to hypothetical protein FLJ37953 RGD1311269 301419 NM_001170473 /// NR_033170 1389183_at BI281709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281709 /DB_XREF=gi:14931724 /DB_XREF=UI-R-CT0s-cav-e-09-0-UI.s1 /CLONE=UI-R-CT0s-cav-e-09-0-UI /FEA=EST /CNT=10 /TID=Rn.19445.1 /TIER=Stack /STK=8 /UG=Rn.19445 /UG_TITLE=ESTs, Highly similar to PMS2 MOUSE PMS1 PROTEIN HOMOLOG 2 (M.musculus) BI281709 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) Pms2 288479 NM_001105908 0006281 // DNA repair // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006298 // mismatch repair // inferred from electronic annotation /// 0006298 // mismatch repair // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0016446 // somatic hypermutation of immunoglobulin genes // not recorded /// 0016446 // somatic hypermutation of immunoglobulin genes // inferred from electronic annotation /// 0016447 // somatic recombination of immunoglobulin gene segments // not recorded /// 0016447 // somatic recombination of immunoglobulin gene segments // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern 0032389 // MutLalpha complex // not recorded /// 0032389 // MutLalpha complex // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // not recorded /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0030983 // mismatched DNA binding // inferred from electronic annotation /// 0032138 // single base insertion or deletion binding // not recorded /// 0032138 // single base insertion or deletion binding // inferred from electronic annotation /// 0032407 // MutSalpha complex binding // not recorded /// 0032407 // MutSalpha complex binding // inferred from electronic annotation 1389184_at AA818914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818914 /DB_XREF=gi:4227586 /DB_XREF=UI-R-A0-as-b-01-0-UI.s1 /CLONE=UI-R-A0-as-b-01-0-UI /FEA=EST /CNT=10 /TID=Rn.17421.1 /TIER=Stack /STK=8 /UG=Rn.17421 /UG_TITLE=ESTs, Highly similar to RP30_MOUSE Ribonuclease P protein subunit p30 (RNaseP protein p30) (RNase P subunit 2) (M.musculus) AA818914 ribonuclease P/MRP 30 subunit (human) Rpp30 685332 NM_001191083 /// XM_001063377 /// XM_002725718 0008033 // tRNA processing // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004540 // ribonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389185_at BI281183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281183 /DB_XREF=gi:14930661 /DB_XREF=UI-R-CT0s-cat-c-12-0-UI.s1 /CLONE=UI-R-CT0s-cat-c-12-0-UI /FEA=EST /CNT=10 /TID=Rn.21868.2 /TIER=Stack /STK=8 /UG=Rn.21868 /LL=24183 /UG_GENE=Ak1 /UG_TITLE=Adenylate kinase 1 BI281183 Adenylate kinase 1 Ak1 24183 NM_024349 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0014042 // positive regulation of neuron maturation // inferred from expression pattern /// 0032502 // developmental process // inferred from expression pattern /// 0046034 // ATP metabolic process // inferred from electronic annotation /// 0046083 // adenine metabolic process // non-traceable author statement /// 0046939 // nucleotide phosphorylation // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0043005 // neuron projection // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004017 // adenylate kinase activity // inferred from direct assay /// 0004017 // adenylate kinase activity // not recorded /// 0004017 // adenylate kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019205 // nucleobase, nucleoside, nucleotide kinase activity // inferred from electronic annotation 1389186_at AA944175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944175 /DB_XREF=gi:3104091 /DB_XREF=EST199674 /CLONE=REMAD29 /FEA=EST /CNT=10 /TID=Rn.7686.1 /TIER=Stack /STK=8 /UG=Rn.7686 /UG_TITLE=ESTs AA944175 1389187_at BI286421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286421 /DB_XREF=gi:14941050 /DB_XREF=UI-R-DE0-cak-g-08-0-UI.s1 /CLONE=UI-R-DE0-cak-g-08-0-UI /FEA=EST /CNT=10 /TID=Rn.36419.1 /TIER=Stack /STK=8 /UG=Rn.36419 /UG_TITLE=ESTs BI286421 1389188_at BE111778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111778 /DB_XREF=gi:8503883 /DB_XREF=UI-R-BJ1-avx-f-12-0-UI.s1 /CLONE=UI-R-BJ1-avx-f-12-0-UI /FEA=EST /CNT=10 /TID=Rn.20468.1 /TIER=Stack /STK=8 /UG=Rn.20468 /UG_TITLE=ESTs BE111778 G protein-coupled receptor 108 Gpr108 316136 NM_199399 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1389189_at BF555956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555956 /DB_XREF=gi:11665686 /DB_XREF=UI-R-A1-dx-c-03-0-UI.r1 /CLONE=UI-R-A1-dx-c-03-0-UI /FEA=EST /CNT=10 /TID=Rn.8362.1 /TIER=Stack /STK=8 /UG=Rn.8362 /UG_TITLE=ESTs BF555956 actinin, alpha 1 Actn1 81634 NM_031005 0048041 // focal adhesion assembly // not recorded /// 0051017 // actin filament bundle assembly // inferred from electronic annotation /// 0051017 // actin filament bundle assembly // not recorded /// 0051271 // negative regulation of cellular component movement // not recorded 0001725 // stress fiber // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0015629 // actin cytoskeleton // not recorded /// 0030018 // Z disc // inferred from electronic annotation /// 0030018 // Z disc // not recorded /// 0030864 // cortical actin cytoskeleton // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017166 // vinculin binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0051015 // actin filament binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1389190_at BM392076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392076 /DB_XREF=gi:18192129 /DB_XREF=UI-R-DO1-ckp-g-15-0-UI.s1 /CLONE=UI-R-DO1-ckp-g-15-0-UI /FEA=EST /CNT=10 /TID=Rn.23951.1 /TIER=Stack /STK=8 /UG=Rn.23951 /UG_TITLE=ESTs BM392076 leucine zipper, putative tumor suppressor 2 Lzts2 365468 NM_001014247 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0010942 // positive regulation of cell death // inferred from direct assay /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 1389191_at AA858649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858649 /DB_XREF=gi:4228843 /DB_XREF=UI-R-A0-bf-d-02-0-UI.s1 /CLONE=UI-R-A0-bf-d-02-0-UI /FEA=EST /CNT=10 /TID=Rn.16864.1 /TIER=Stack /STK=8 /UG=Rn.16864 /UG_TITLE=ESTs, Weakly similar to F17C11.8.p (Caenorhabditis elegans) (C.elegans) AA858649 vacuolar protein sorting 36 homolog (S. cerevisiae) Vps36 290851 NM_001106092 0006350 // transcription // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0016020 // membrane // inferred from electronic annotation 0008289 // lipid binding // inferred from electronic annotation /// 0043130 // ubiquitin binding // inferred from electronic annotation /// 0043130 // ubiquitin binding // not recorded 1389192_at AA800521 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800521 /DB_XREF=gi:2863476 /DB_XREF=EST190018 /CLONE=RLUAB12 /FEA=EST /CNT=10 /TID=Rn.3531.1 /TIER=Stack /STK=8 /UG=Rn.3531 /UG_TITLE=ESTs AA800521 ATP5S-like Atp5sl 361520 NM_001009705 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1389193_at BM388083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388083 /DB_XREF=gi:18188136 /DB_XREF=UI-R-DM1-cjz-d-11-0-UI.s1 /CLONE=UI-R-DM1-cjz-d-11-0-UI /FEA=EST /CNT=10 /TID=Rn.41133.1 /TIER=Stack /STK=8 /UG=Rn.41133 /UG_TITLE=ESTs BM388083 sortilin-related VPS10 domain containing receptor 2 Sorcs2 305438 NM_001107225 0016021 // integral to membrane // inferred from electronic annotation 1389194_at AI406491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406491 /DB_XREF=gi:4249995 /DB_XREF=EST234777 /CLONE=RBRDL44 /FEA=EST /CNT=10 /TID=Rn.3346.1 /TIER=Stack /STK=8 /UG=Rn.3346 /UG_TITLE=ESTs AI406491 1389195_at AI236726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236726 /DB_XREF=gi:3830232 /DB_XREF=EST233288 /CLONE=ROVDJ78 /FEA=EST /CNT=10 /TID=Rn.6514.1 /TIER=Stack /STK=8 /UG=Rn.6514 /UG_TITLE=ESTs AI236726 DNA fragmentation factor, alpha subunit Dffa 114214 NM_053679 0006309 // DNA fragmentation involved in apoptotic nuclear change // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1389196_at AI180051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180051 /DB_XREF=gi:3730689 /DB_XREF=EST223785 /CLONE=RSPCP35 /FEA=EST /CNT=10 /TID=Rn.24688.1 /TIER=Stack /STK=8 /UG=Rn.24688 /UG_TITLE=ESTs AI180051 hypothetical protein LOC681367 LOC681367 681367 XM_001061427 /// XM_002727180 1389197_at BI290535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290535 /DB_XREF=gi:14949194 /DB_XREF=UI-R-DK0-cgd-d-07-0-UI.s1 /CLONE=UI-R-DK0-cgd-d-07-0-UI /FEA=EST /CNT=10 /TID=Rn.7051.1 /TIER=Stack /STK=8 /UG=Rn.7051 /UG_TITLE=ESTs BI290535 KTEL (Lys-Tyr-Glu-Leu) containing 1 Ktelc1 288091 NM_001100652 1389198_at AI179893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179893 /DB_XREF=gi:3730531 /DB_XREF=EST223624 /CLONE=RSPCN38 /FEA=EST /CNT=10 /TID=Rn.16537.1 /TIER=Stack /STK=8 /UG=Rn.16537 /UG_TITLE=ESTs AI179893 SH2 domain containing 3C Sh2d3c 362111 NM_001108579 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1389199_at AI407536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407536 /DB_XREF=gi:4251040 /DB_XREF=EST235826 /CLONE=ROVEA05 /FEA=EST /CNT=10 /TID=Rn.15757.1 /TIER=Stack /STK=8 /UG=Rn.15757 /UG_TITLE=ESTs AI407536 similar to Ab2-095 RGD1309079 315891 NM_001134472 1389200_at AA851296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851296 /DB_XREF=gi:2938836 /DB_XREF=EST194064 /CLONE=RPLAE90 /FEA=EST /CNT=10 /TID=Rn.22879.1 /TIER=Stack /STK=8 /UG=Rn.22879 /UG_TITLE=ESTs, Highly similar to BYST MOUSE BYSTIN (M.musculus) AA851296 bystin-like Bysl 359727 NM_182674 0007420 // brain development // inferred from expression pattern /// 0030182 // neuron differentiation // inferred from expression pattern /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0071222 // cellular response to lipopolysaccharide // inferred from expression pattern /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern /// 0071407 // cellular response to organic cyclic substance // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // inferred from direct assay /// 0042995 // cell projection // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 1389201_at BG373545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373545 /DB_XREF=gi:13270082 /DB_XREF=UI-R-CV1-bse-a-11-0-UI.s1 /CLONE=UI-R-CV1-bse-a-11-0-UI /FEA=EST /CNT=19 /TID=Rn.39306.1 /TIER=Stack /STK=8 /UG=Rn.39306 /UG_TITLE=ESTs, Weakly similar to REQN RAT ZINC-FINGER PROTEIN NEURO-D4 (R.norvegicus) BG373545 hypothetical protein LOC100125364 LOC100125364 100125364 NM_001103356 0005576 // extracellular region // inferred from electronic annotation 1389202_at AA944520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944520 /DB_XREF=gi:4132418 /DB_XREF=EST200019 /CLONE=REMAK50 /FEA=EST /CNT=14 /TID=Rn.7746.1 /TIER=Stack /STK=8 /UG=Rn.7746 /UG_TITLE=ESTs AA944520 ribulose-5-phosphate-3-epimerase Rpe 501157 NM_001033903 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006098 // pentose-phosphate shunt // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0009052 // pentose-phosphate shunt, non-oxidative branch // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005792 // microsome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004750 // ribulose-phosphate 3-epimerase activity // inferred from direct assay /// 0004750 // ribulose-phosphate 3-epimerase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from direct assay /// 0048029 // monosaccharide binding // inferred from direct assay 1389203_at BM387541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387541 /DB_XREF=gi:18187594 /DB_XREF=UI-R-CN1-cjl-g-16-0-UI.s1 /CLONE=UI-R-CN1-cjl-g-16-0-UI /FEA=EST /CNT=12 /TID=Rn.42573.1 /TIER=Stack /STK=8 /UG=Rn.42573 /UG_TITLE=ESTs BM387541 SH3 binding domain protein 5 like Sh3bp5l 690898 NM_001127581 1389204_at AI009647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009647 /DB_XREF=gi:4133083 /DB_XREF=EST204098 /CLONE=RLUBG74 /FEA=EST /CNT=12 /TID=Rn.13563.1 /TIER=Stack /STK=8 /UG=Rn.13563 /UG_TITLE=ESTs AI009647 similar to chromosome 10 open reading frame 18 RGD1564456 361269 XM_001068906 /// XM_341552 1389205_at AI012582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012582 /DB_XREF=gi:3226414 /DB_XREF=EST207033 /CLONE=RPLAZ21 /FEA=EST /CNT=11 /TID=Rn.6367.1 /TIER=Stack /STK=8 /UG=Rn.6367 /UG_TITLE=ESTs AI012582 1389206_at BE116867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116867 /DB_XREF=gi:8508972 /DB_XREF=UI-R-BS1-azg-b-09-0-UI.s1 /CLONE=UI-R-BS1-azg-b-09-0-UI /FEA=EST /CNT=11 /TID=Rn.14665.1 /TIER=Stack /STK=8 /UG=Rn.14665 /UG_TITLE=ESTs BE116867 1389207_at BI282122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282122 /DB_XREF=gi:14932553 /DB_XREF=UI-R-CU0s-cbw-g-11-0-UI.s1 /CLONE=UI-R-CU0s-cbw-g-11-0-UI /FEA=EST /CNT=11 /TID=Rn.12172.1 /TIER=Stack /STK=8 /UG=Rn.12172 /UG_TITLE=ESTs, Weakly similar to A53770 growth factor-responsive protein, vascular smooth muscle - rat (R.norvegicus) BI282122 EGL nine homolog 1 (C. elegans) Egln1 308913 XM_002725436 /// XM_002728611 0001666 // response to hypoxia // inferred from direct assay /// 0001666 // response to hypoxia // not recorded /// 0032364 // oxygen homeostasis // not recorded /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0055008 // cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055008 // cardiac muscle tissue morphogenesis // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060347 // heart trabecula formation // inferred from electronic annotation /// 0060347 // heart trabecula formation // not recorded /// 0060412 // ventricular septum morphogenesis // inferred from electronic annotation /// 0060412 // ventricular septum morphogenesis // not recorded /// 0060711 // labyrinthine layer development // inferred from electronic annotation /// 0060711 // labyrinthine layer development // not recorded 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389208_at AA944562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944562 /DB_XREF=gi:3104478 /DB_XREF=EST200061 /CLONE=REMAL11 /FEA=EST /CNT=11 /TID=Rn.7755.1 /TIER=Stack /STK=8 /UG=Rn.7755 /UG_TITLE=ESTs, Weakly similar to T00068 hypothetical protein KIAA0443 (H.sapiens) AA944562 armadillo repeat containing, X-linked 4 LOC100359678 100359678 XM_002727638 /// XM_002730285 0005488 // binding // inferred from electronic annotation 1389209_at BG666095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666095 /DB_XREF=gi:13888017 /DB_XREF=DRACNG05 /CLONE=DRACNG05 /FEA=EST /CNT=10 /TID=Rn.38271.1 /TIER=Stack /STK=8 /UG=Rn.38271 /UG_TITLE=ESTs, Weakly similar to K11G12.6.p (Caenorhabditis elegans) (C.elegans) BG666095 lipase maturation factor 2 Lmf2 315218 NM_001079939 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1389210_at BE109711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109711 /DB_XREF=gi:8501816 /DB_XREF=UI-R-BJ1-aup-c-06-0-UI.s1 /CLONE=UI-R-BJ1-aup-c-06-0-UI /FEA=EST /CNT=10 /TID=Rn.14256.1 /TIER=Stack /STK=8 /UG=Rn.14256 /UG_TITLE=ESTs BE109711 lymphocyte cytosolic protein 1 Lcp1 306071 NM_001012044 0002286 // T cell activation involved in immune response // inferred from electronic annotation /// 0002286 // T cell activation involved in immune response // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0033157 // regulation of intracellular protein transport // inferred from electronic annotation /// 0033157 // regulation of intracellular protein transport // not recorded /// 0051017 // actin filament bundle assembly // inferred from electronic annotation /// 0051017 // actin filament bundle assembly // not recorded 0001726 // ruffle // inferred from electronic annotation /// 0001726 // ruffle // not recorded /// 0001891 // phagocytic cup // inferred from electronic annotation /// 0001891 // phagocytic cup // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005884 // actin filament // inferred from electronic annotation /// 0005884 // actin filament // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0051015 // actin filament binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1389211_at AA943808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943808 /DB_XREF=gi:3103724 /DB_XREF=EST199307 /CLONE=RBRAP93 /FEA=EST /CNT=10 /TID=Rn.23257.1 /TIER=Stack /STK=8 /UG=Rn.23257 /UG_TITLE=ESTs AA943808 cyclic AMP-regulated phosphoprotein Arpp-21 363153 NM_001135045 /// NM_001135046 0034605 // cellular response to heat // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation 1389212_at BI296278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296278 /DB_XREF=gi:14960563 /DB_XREF=UI-R-DK0-cey-d-12-0-UI.s1 /CLONE=UI-R-DK0-cey-d-12-0-UI /FEA=EST /CNT=10 /TID=Rn.11805.1 /TIER=Stack /STK=8 /UG=Rn.11805 /UG_TITLE=ESTs BI296278 1389213_at AI408955 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408955 /DB_XREF=gi:4252459 /DB_XREF=EST237246 /CLONE=RKIDK65 /FEA=EST /CNT=10 /TID=Rn.35462.1 /TIER=Stack /STK=8 /UG=Rn.35462 /UG_TITLE=ESTs AI408955 vasohibin 1 Vash1 503052 XM_001058397 /// XM_578575 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0016525 // negative regulation of angiogenesis // not recorded /// 0043537 // negative regulation of blood vessel endothelial cell migration // not recorded /// 0051789 // response to protein stimulus // not recorded 0005615 // extracellular space // not recorded /// 0005783 // endoplasmic reticulum // not recorded 1389214_at BF406693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406693 /DB_XREF=gi:11394668 /DB_XREF=UI-R-BJ2-bpo-a-08-0-UI.s1 /CLONE=UI-R-BJ2-bpo-a-08-0-UI /FEA=EST /CNT=10 /TID=Rn.38182.1 /TIER=Stack /STK=8 /UG=Rn.38182 /UG_TITLE=ESTs, Weakly similar to LMA3 MOUSE LAMININ ALPHA-3 CHAIN PRECURSOR (M.musculus) BF406693 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0045995 // regulation of embryonic development // inferred from electronic annotation 0005604 // basement membrane // inferred from electronic annotation /// 0005606 // laminin-1 complex // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation 1389215_at AI407424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407424 /DB_XREF=gi:4250928 /DB_XREF=EST235713 /CLONE=ROVED41 /FEA=EST /CNT=10 /TID=Rn.19271.1 /TIER=Stack /STK=8 /UG=Rn.19271 /UG_TITLE=ESTs, Moderately similar to SPS2 MOUSE SELENIDE,WATER DIKINASE 2 (M.musculus) AI407424 selenophosphate synthetase 1 Sephs1 291314 NM_001104630 0003824 // catalytic activity // inferred from electronic annotation /// 0004756 // selenide, water dikinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1389216_at AW523499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523499 /DB_XREF=gi:7165884 /DB_XREF=UI-R-BO0-aho-h-02-0-UI.s1 /CLONE=UI-R-BO0-aho-h-02-0-UI /FEA=EST /CNT=10 /TID=Rn.24190.1 /TIER=Stack /STK=8 /UG=Rn.24190 /UG_TITLE=ESTs AW523499 1389217_at AI599568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599568 /DB_XREF=gi:4608616 /DB_XREF=EST251271 /CLONE=REMEP40 /FEA=EST /CNT=10 /TID=Rn.22916.1 /TIER=Stack /STK=8 /UG=Rn.22916 /UG_TITLE=ESTs AI599568 RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase Rfng 60433 NM_021849 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045746 // negative regulation of Notch signaling pathway // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0033829 // O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity // inferred from electronic annotation 1389218_at AI169490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169490 /DB_XREF=gi:4134410 /DB_XREF=EST215349 /CLONE=RKIBT09 /FEA=EST /CNT=10 /TID=Rn.16176.1 /TIER=Stack /STK=8 /UG=Rn.16176 /UG_TITLE=ESTs AI169490 1389219_at AI406322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406322 /DB_XREF=gi:4249826 /DB_XREF=EST234608 /CLONE=RBRDM67 /FEA=EST /CNT=10 /TID=Rn.38767.1 /TIER=Stack /STK=8 /UG=Rn.38767 /UG_TITLE=ESTs AI406322 Similar to lysophosphatidylglycerol acyltransferase 1 LOC679692 679692 NM_001109376 0008152 // metabolic process // inferred from electronic annotation 0005737 // cytoplasm // not recorded 0008415 // acyltransferase activity // inferred from electronic annotation 1389220_at BE112918 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112918 /DB_XREF=gi:8505023 /DB_XREF=UI-R-BJ1-awa-d-03-0-UI.s1 /CLONE=UI-R-BJ1-awa-d-03-0-UI /FEA=EST /CNT=9 /TID=Rn.30073.1 /TIER=Stack /STK=8 /UG=Rn.30073 /UG_TITLE=ESTs BE112918 1389221_at BI296275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296275 /DB_XREF=gi:14960557 /DB_XREF=UI-R-DK0-cey-d-08-0-UI.s1 /CLONE=UI-R-DK0-cey-d-08-0-UI /FEA=EST /CNT=9 /TID=Rn.23659.1 /TIER=Stack /STK=8 /UG=Rn.23659 /UG_TITLE=ESTs BI296275 monocyte to macrophage differentiation-associated 2 Mmd2 304301 NM_001037217 0019835 // cytolysis // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 1389222_at BI282847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282847 /DB_XREF=gi:14934018 /DB_XREF=UI-R-CW0s-ccc-b-03-0-UI.s1 /CLONE=UI-R-CW0s-ccc-b-03-0-UI /FEA=EST /CNT=9 /TID=Rn.9392.1 /TIER=Stack /STK=8 /UG=Rn.9392 /UG_TITLE=ESTs BI282847 Similar to Serum amyloid A-3 protein precursor LOC691143 691143 0006953 // acute-phase response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1389223_at AI177186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177186 /DB_XREF=gi:4134961 /DB_XREF=EST220793 /CLONE=ROVCB89 /FEA=EST /CNT=9 /TID=Rn.29076.1 /TIER=Stack /STK=8 /UG=Rn.29076 /UG_TITLE=ESTs AI177186 1389224_at BI296652 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296652 /DB_XREF=gi:14961290 /DB_XREF=UI-R-CV2-cgt-g-03-0-UI.s1 /CLONE=UI-R-CV2-cgt-g-03-0-UI /FEA=EST /CNT=9 /TID=Rn.67029.1 /TIER=Stack /STK=8 /UG=Rn.67029 /UG_TITLE=ESTs BI296652 1389225_at BI296570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296570 /DB_XREF=gi:14961125 /DB_XREF=UI-R-CV2-cgs-g-05-0-UI.s1 /CLONE=UI-R-CV2-cgs-g-05-0-UI /FEA=EST /CNT=9 /TID=Rn.15421.1 /TIER=Stack /STK=8 /UG=Rn.15421 /UG_TITLE=ESTs BI296570 1389226_at BI295219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295219 /DB_XREF=gi:14958445 /DB_XREF=UI-R-DK0-cet-c-04-0-UI.s1 /CLONE=UI-R-DK0-cet-c-04-0-UI /FEA=EST /CNT=9 /TID=Rn.27145.1 /TIER=Stack /STK=8 /UG=Rn.27145 /UG_TITLE=ESTs BI295219 stromal antigen 1 Stag1 315958 NM_001108179 0000785 // chromatin // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389227_at BG375902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375902 /DB_XREF=gi:13300374 /DB_XREF=UI-R-CU0-bur-a-04-0-UI.s1 /CLONE=UI-R-CU0-bur-a-04-0-UI /FEA=EST /CNT=9 /TID=Rn.11976.1 /TIER=Stack /STK=8 /UG=Rn.11976 /UG_TITLE=ESTs BG375902 ras homolog gene family, member G (rho G) Rhog 308875 NM_001037195 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // not recorded /// 0016601 // Rac protein signal transduction // inferred from electronic annotation /// 0016601 // Rac protein signal transduction // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1389228_at AI412292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412292 /DB_XREF=gi:4255796 /DB_XREF=EST240589 /CLONE=RBRDV73 /FEA=EST /CNT=9 /TID=Rn.2397.1 /TIER=Stack /STK=8 /UG=Rn.2397 /UG_TITLE=ESTs AI412292 family with sequence similarity 136, member A Fam136a 297415 NM_001106605 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // not recorded 1389229_at AI113146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113146 /DB_XREF=gi:3513095 /DB_XREF=UI-R-C2p-np-a-08-0-UI.s1 /CLONE=UI-R-C2p-np-a-08-0-UI /FEA=EST /CNT=9 /TID=Rn.9589.1 /TIER=Stack /STK=8 /UG=Rn.9589 /UG_TITLE=ESTs, Moderately similar to T46373 hypothetical protein DKFZp434B2119.1 (H.sapiens) AI113146 acid phosphatase-like 2 Acpl2 315939 NM_001007710 0005576 // extracellular region // inferred from electronic annotation 0003993 // acid phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1389230_at AA818910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818910 /DB_XREF=gi:4227582 /DB_XREF=UI-R-A0-as-a-09-0-UI.s1 /CLONE=UI-R-A0-as-a-09-0-UI /FEA=EST /CNT=9 /TID=Rn.4302.1 /TIER=Stack /STK=8 /UG=Rn.4302 /UG_TITLE=ESTs AA818910 1389231_at BI296728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296728 /DB_XREF=gi:14961445 /DB_XREF=UI-R-CV2-cgv-f-04-0-UI.s1 /CLONE=UI-R-CV2-cgv-f-04-0-UI /FEA=EST /CNT=9 /TID=Rn.46501.1 /TIER=Stack /STK=8 /UG=Rn.46501 /UG_TITLE=ESTs BI296728 1389232_at BI296464 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296464 /DB_XREF=gi:14960912 /DB_XREF=UI-R-CV2-cgr-e-05-0-UI.s1 /CLONE=UI-R-CV2-cgr-e-05-0-UI /FEA=EST /CNT=9 /TID=Rn.62598.1 /TIER=Stack /STK=8 /UG=Rn.62598 /UG_TITLE=ESTs BI296464 WD repeat domain 5B Wdr5b 303907 NM_001024766 1389233_at BI289596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289596 /DB_XREF=gi:14947332 /DB_XREF=UI-R-DK0-cff-h-04-0-UI.s1 /CLONE=UI-R-DK0-cff-h-04-0-UI /FEA=EST /CNT=9 /TID=Rn.12867.1 /TIER=Stack /STK=8 /UG=Rn.12867 /UG_TITLE=ESTs, Moderately similar to RalBP1 associated Eps domain containing protein (Mus musculus) (M.musculus) BI289596 RALBP1 associated Eps domain containing 1 Reps1 292944 NM_001106264 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389234_at BI298314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298314 /DB_XREF=gi:14974589 /DB_XREF=UI-R-CV2-chh-g-09-0-UI.s1 /CLONE=UI-R-CV2-chh-g-09-0-UI /FEA=EST /CNT=9 /TID=Rn.35561.1 /TIER=Stack /STK=8 /UG=Rn.35561 /UG_TITLE=ESTs, Weakly similar to MUCL RAT INTESTINAL MUCIN-LIKE PROTEIN (R.norvegicus) BI298314 von Willebrand factor Vwf 116669 XM_001066203 /// XM_342759 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0001890 // placenta development // inferred from electronic annotation /// 0001890 // placenta development // not recorded /// 0006950 // response to stress // inferred from expression pattern /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0007596 // blood coagulation // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from mutant phenotype /// 0007596 // blood coagulation // not recorded /// 0007599 // hemostasis // not recorded /// 0007599 // hemostasis // inferred from electronic annotation /// 0030168 // platelet activation // inferred from mutant phenotype /// 0030168 // platelet activation // not recorded /// 0030168 // platelet activation // inferred from electronic annotation /// 0031589 // cell-substrate adhesion // inferred from electronic annotation /// 0031589 // cell-substrate adhesion // not recorded /// 0042246 // tissue regeneration // non-traceable author statement /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0033093 // Weibel-Palade body // inferred from electronic annotation /// 0033093 // Weibel-Palade body // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0001948 // glycoprotein binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // not recorded /// 0002020 // protease binding // inferred from electronic annotation /// 0002020 // protease binding // not recorded /// 0005178 // integrin binding // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005518 // collagen binding // inferred from electronic annotation /// 0005518 // collagen binding // not recorded /// 0019865 // immunoglobulin binding // inferred from electronic annotation /// 0019865 // immunoglobulin binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded /// 0051087 // chaperone binding // inferred from electronic annotation /// 0051087 // chaperone binding // not recorded 1389235_at AI410467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410467 /DB_XREF=gi:4253971 /DB_XREF=EST238760 /CLONE=RKIDL79 /FEA=EST /CNT=9 /TID=Rn.24152.1 /TIER=Stack /STK=8 /UG=Rn.24152 /UG_TITLE=ESTs, Moderately similar to ICA2 MOUSE INTERCELLULAR ADHESION MOLECULE-2 PRECURSOR (M.musculus) AI410467 intercellular adhesion molecule 2 Icam2 360647 NM_001007725 0016337 // cell-cell adhesion // inferred from electronic annotation 0001931 // uropod // inferred from electronic annotation /// 0001931 // uropod // not recorded /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005178 // integrin binding // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389236_at AI104915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104915 /DB_XREF=gi:3709146 /DB_XREF=EST214204 /CLONE=RHECL19 /FEA=EST /CNT=9 /TID=Rn.22464.1 /TIER=Stack /STK=8 /UG=Rn.22464 /UG_TITLE=ESTs, Weakly similar to norvegicus myosin binding protein H (Rattus norvegicus) (R.norvegicus) AI104915 myosin binding protein H-like Mybphl 310782 NM_001014042 1389237_at BM383698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383698 /DB_XREF=gi:18183751 /DB_XREF=UI-R-DM1-ckb-e-11-0-UI.s1 /CLONE=UI-R-DM1-ckb-e-11-0-UI /FEA=EST /CNT=9 /TID=Rn.3500.1 /TIER=Stack /STK=8 /UG=Rn.3500 /UG_TITLE=ESTs BM383698 zinc finger, C3HC-type containing 1 Zc3hc1 296957 NM_001127293 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded 1389238_at BG376577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376577 /DB_XREF=gi:13301049 /DB_XREF=UI-R-CU0-buu-c-11-0-UI.s1 /CLONE=UI-R-CU0-buu-c-11-0-UI /FEA=EST /CNT=9 /TID=Rn.43561.1 /TIER=Stack /STK=8 /UG=Rn.43561 /UG_TITLE=ESTs BG376577 pescadillo homolog 1, containing BRCT domain (zebrafish) Pes1 289740 NM_001044228 0000089 // mitotic metaphase // not recorded /// 0000463 // maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // not recorded /// 0000463 // maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // inferred from sequence or structural similarity /// 0000463 // maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // inferred from electronic annotation /// 0000466 // maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // not recorded /// 0000466 // maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // inferred from sequence or structural similarity /// 0000466 // maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from electronic annotation /// 0007000 // nucleolus organization // not recorded /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from sequence or structural similarity /// 0008283 // cell proliferation // inferred from electronic annotation /// 0042254 // ribosome biogenesis // not recorded /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded 0000793 // condensed chromosome // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005654 // nucleoplasm // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from electronic annotation /// 0030687 // preribosome, large subunit precursor // not recorded /// 0030687 // preribosome, large subunit precursor // inferred from sequence or structural similarity /// 0030687 // preribosome, large subunit precursor // inferred from electronic annotation /// 0070545 // PeBoW complex // not recorded /// 0070545 // PeBoW complex // inferred from sequence or structural similarity /// 0070545 // PeBoW complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389239_at BM384377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384377 /DB_XREF=gi:18184430 /DB_XREF=UI-R-CN1-cjn-a-08-0-UI.s1 /CLONE=UI-R-CN1-cjn-a-08-0-UI /FEA=EST /CNT=9 /TID=Rn.6661.1 /TIER=Stack /STK=8 /UG=Rn.6661 /UG_TITLE=ESTs BM384377 1389240_at AW527026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527026 /DB_XREF=gi:7169440 /DB_XREF=UI-R-BO1-ajg-f-11-0-UI.s1 /CLONE=UI-R-BO1-ajg-f-11-0-UI /FEA=EST /CNT=9 /TID=Rn.18153.1 /TIER=Stack /STK=8 /UG=Rn.18153 /UG_TITLE=ESTs AW527026 1389241_at AA800593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800593 /DB_XREF=gi:2863548 /DB_XREF=EST190090 /CLONE=RLUAB58 /FEA=EST /CNT=9 /TID=Rn.4072.1 /TIER=Stack /STK=8 /UG=Rn.4072 /UG_TITLE=ESTs AA800593 1389242_at BG377726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377726 /DB_XREF=gi:13302198 /DB_XREF=UI-R-CU0-bva-c-10-0-UI.s1 /CLONE=UI-R-CU0-bva-c-10-0-UI /FEA=EST /CNT=9 /TID=Rn.18113.1 /TIER=Stack /STK=8 /UG=Rn.18113 /UG_TITLE=ESTs BG377726 1389243_at AI599794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599794 /DB_XREF=gi:4608842 /DB_XREF=EST251497 /CLONE=REMEN05 /FEA=EST /CNT=9 /TID=Rn.20458.1 /TIER=Stack /STK=8 /UG=Rn.20458 /UG_TITLE=ESTs AI599794 1389244_x_at AA945737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945737 /DB_XREF=gi:4132591 /DB_XREF=EST201236 /CLONE=RLUAS64 /FEA=EST /CNT=9 /TID=Rn.44431.3 /TIER=Stack /STK=8 /UG=Rn.44431 /LL=60628 /UG_GENE=Cxcr4 /UG_TITLE=CXC chemokine receptor AA945737 chemokine (C-X-C motif) receptor 4 Cxcr4 60628 NM_022205 0001569 // patterning of blood vessels // not recorded /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0001667 // ameboidal cell migration // not recorded /// 0001667 // ameboidal cell migration // inferred from electronic annotation /// 0001764 // neuron migration // inferred from direct assay /// 0001764 // neuron migration // inferred from mutant phenotype /// 0001764 // neuron migration // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0002064 // epithelial cell development // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007281 // germ cell development // not recorded /// 0007281 // germ cell development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0008038 // neuron recognition // inferred from expression pattern /// 0008045 // motor axon guidance // not recorded /// 0008045 // motor axon guidance // inferred from electronic annotation /// 0008354 // germ cell migration // not recorded /// 0008354 // germ cell migration // inferred from electronic annotation /// 0016477 // cell migration // inferred from mutant phenotype /// 0019059 // initiation of viral infection // not recorded /// 0022029 // telencephalon cell migration // inferred from mutant phenotype /// 0030334 // regulation of cell migration // not recorded /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0042098 // T cell proliferation // not recorded /// 0042098 // T cell proliferation // inferred from electronic annotation /// 0043067 // regulation of programmed cell death // inferred from mutant phenotype /// 0050920 // regulation of chemotaxis // inferred from mutant phenotype /// 0050920 // regulation of chemotaxis // not recorded /// 0051924 // regulation of calcium ion transport // inferred from mutant phenotype /// 0060048 // cardiac muscle contraction // inferred from mutant phenotype 0005768 // endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0030426 // growth cone // not recorded /// 0030426 // growth cone // inferred from electronic annotation /// 0031252 // cell leading edge // not recorded /// 0031410 // cytoplasmic vesicle // not recorded 0003779 // actin binding // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016493 // C-C chemokine receptor activity // traceable author statement /// 0016493 // C-C chemokine receptor activity // inferred from electronic annotation /// 0016494 // C-X-C chemokine receptor activity // traceable author statement /// 0016494 // C-X-C chemokine receptor activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0032027 // myosin light chain binding // not recorded /// 0043130 // ubiquitin binding // not recorded 1389245_at BF542903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542903 /DB_XREF=gi:11634010 /DB_XREF=UI-R-C3-tp-b-02-0-UI.r1 /CLONE=UI-R-C3-tp-b-02-0-UI /FEA=EST /CNT=9 /TID=Rn.40924.1 /TIER=Stack /STK=8 /UG=Rn.40924 /UG_TITLE=ESTs BF542903 proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 Psmd7 307821 NM_001107426 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation 0005515 // protein binding // not recorded 1389246_at BF282414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282414 /DB_XREF=gi:11213396 /DB_XREF=EST446917 /CLONE=RGIDM31 /FEA=EST /CNT=9 /TID=Rn.8685.1 /TIER=Stack /STK=8 /UG=Rn.8685 /UG_TITLE=ESTs BF282414 1389247_at BI274108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274108 /DB_XREF=gi:14884719 /DB_XREF=UI-R-CW0-bwf-a-10-0-UI.s1 /CLONE=UI-R-CW0-bwf-a-10-0-UI /FEA=EST /CNT=9 /TID=Rn.41904.1 /TIER=Stack /STK=8 /UG=Rn.41904 /UG_TITLE=ESTs, Weakly similar to RPB1 MOUSE DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT (M.musculus) BI274108 polymerase (RNA) III (DNA directed) polypeptide A Polr3a 361102 XM_001056048 /// XM_341388 0006350 // transcription // inferred from electronic annotation /// 0032728 // positive regulation of interferon-beta production // inferred from electronic annotation /// 0032728 // positive regulation of interferon-beta production // not recorded /// 0045087 // innate immune response // inferred from electronic annotation /// 0045087 // innate immune response // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0032549 // ribonucleoside binding // inferred from electronic annotation 1389248_at AI548699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548699 /DB_XREF=gi:4466187 /DB_XREF=UI-R-C3-tw-b-05-0-UI.s1 /CLONE=UI-R-C3-tw-b-05-0-UI /FEA=EST /CNT=9 /TID=Rn.9522.1 /TIER=Stack /STK=8 /UG=Rn.9522 /UG_TITLE=ESTs, Highly similar to GAL1_MOUSE GALACTOKINASE (GALACTOSE KINASE) (M.musculus) AI548699 galactokinase 1 Galk1 287835 NM_001008282 0006012 // galactose metabolic process // inferred from direct assay /// 0006012 // galactose metabolic process // not recorded /// 0006012 // galactose metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019402 // galactitol metabolic process // not recorded /// 0046835 // carbohydrate phosphorylation // inferred from direct assay /// 0046835 // carbohydrate phosphorylation // not recorded /// 0046835 // carbohydrate phosphorylation // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004335 // galactokinase activity // inferred from direct assay /// 0004335 // galactokinase activity // not recorded /// 0004335 // galactokinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005534 // galactose binding // inferred from direct assay /// 0005534 // galactose binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1389249_at BE114850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114850 /DB_XREF=gi:8506955 /DB_XREF=UI-R-BJ1-awq-b-01-0-UI.s1 /CLONE=UI-R-BJ1-awq-b-01-0-UI /FEA=EST /CNT=9 /TID=Rn.13600.1 /TIER=Stack /STK=8 /UG=Rn.13600 /UG_TITLE=ESTs, Highly similar to T42719 TPR-containingSH2-binding phosphoprotein - mouse (M.musculus) BE114850 Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) Ctr9 293184 NM_001100661 /// XM_001077817 /// XM_238127 0010390 // histone monoubiquitination // inferred from electronic annotation /// 0010390 // histone monoubiquitination // not recorded /// 0033523 // histone H2B ubiquitination // inferred from electronic annotation /// 0033523 // histone H2B ubiquitination // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016593 // Cdc73/Paf1 complex // inferred from electronic annotation /// 0016593 // Cdc73/Paf1 complex // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042169 // SH2 domain binding // inferred from electronic annotation /// 0042169 // SH2 domain binding // not recorded 1389250_at AW915115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915115 /DB_XREF=gi:8080801 /DB_XREF=EST346419 /CLONE=RGICJ65 /FEA=EST /CNT=9 /TID=Rn.65477.2 /TIER=Stack /STK=8 /UG=Rn.65477 /UG_TITLE=Rattus norvegicus Lfng mRNA for lunatic fringe, complete cds AW915115 1389251_at AA944380 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944380 /DB_XREF=gi:3104296 /DB_XREF=EST199879 /CLONE=REMAG25 /FEA=EST /CNT=14 /TID=Rn.7720.1 /TIER=Stack /STK=8 /UG=Rn.7720 /UG_TITLE=ESTs, Weakly similar to T26648 hypothetical protein Y38A8.1 - Caenorhabditis elegans (C.elegans) AA944380 nudix (nucleoside diphosphate linked moiety X)-type motif 7 Nudt7 361413 NM_001108450 0015938 // coenzyme A catabolic process // not recorded /// 0046356 // acetyl-CoA catabolic process // not recorded /// 0050873 // brown fat cell differentiation // not recorded 0005777 // peroxisome // not recorded 0003986 // acetyl-CoA hydrolase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1389252_at AI102190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102190 /DB_XREF=gi:4134065 /DB_XREF=EST211479 /CLONE=RBRCA37 /FEA=EST /CNT=11 /TID=Rn.16702.1 /TIER=Stack /STK=8 /UG=Rn.16702 /UG_TITLE=ESTs AI102190 1389253_at BI289085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289085 /DB_XREF=gi:14946292 /DB_XREF=UI-R-DK0-cfe-d-01-0-UI.s1 /CLONE=UI-R-DK0-cfe-d-01-0-UI /FEA=EST /CNT=11 /TID=Rn.16319.1 /TIER=Stack /STK=8 /UG=Rn.16319 /UG_TITLE=ESTs, Moderately similar to VNN1_MOUSE PANTETHEINASE PRECURSOR (PANTETHEINE HYDROLASE) (VASCULAR NON-INFLAMMATORY MOLECULE 1) (VANIN 1) (M.musculus) BI289085 vanin 1 Vnn1 29142 NM_001025623 0002526 // acute inflammatory response // inferred from electronic annotation /// 0002526 // acute inflammatory response // not recorded /// 0002544 // chronic inflammatory response // inferred from electronic annotation /// 0002544 // chronic inflammatory response // not recorded /// 0006807 // nitrogen compound metabolic process // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006954 // inflammatory response // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0015939 // pantothenate metabolic process // inferred from electronic annotation /// 0015939 // pantothenate metabolic process // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0033089 // positive regulation of T cell differentiation in thymus // inferred from electronic annotation /// 0033089 // positive regulation of T cell differentiation in thymus // not recorded /// 0045087 // innate immune response // inferred from electronic annotation /// 0045087 // innate immune response // not recorded 0005615 // extracellular space // not recorded 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation /// 0016811 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides // inferred from electronic annotation /// 0017159 // pantetheine hydrolase activity // inferred from electronic annotation /// 0017159 // pantetheine hydrolase activity // not recorded 1389254_at AA800519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800519 /DB_XREF=gi:2863474 /DB_XREF=EST190016 /CLONE=RLUAB11 /FEA=EST /CNT=10 /TID=Rn.3883.1 /TIER=Stack /STK=8 /UG=Rn.3883 /UG_TITLE=ESTs AA800519 1389255_at BE110616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110616 /DB_XREF=gi:8502721 /DB_XREF=UI-R-BJ1-avu-a-09-0-UI.s1 /CLONE=UI-R-BJ1-avu-a-09-0-UI /FEA=EST /CNT=10 /TID=Rn.7055.1 /TIER=Stack /STK=8 /UG=Rn.7055 /UG_TITLE=ESTs BE110616 Cadherin 5 Cdh5 307618 NM_001107407 0001955 // blood vessel maturation // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // not recorded /// 0005923 // tight junction // not recorded 0005102 // receptor binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008013 // beta-catenin binding // not recorded /// 0019903 // protein phosphatase binding // not recorded /// 0042153 // RPTP-like protein binding // not recorded 1389256_at BG381256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381256 /DB_XREF=gi:13305728 /DB_XREF=UI-R-CT0-bui-a-09-0-UI.s1 /CLONE=UI-R-CT0-bui-a-09-0-UI /FEA=EST /CNT=9 /TID=Rn.1630.1 /TIER=Stack /STK=8 /UG=Rn.1630 /UG_TITLE=ESTs BG381256 1389257_at BI288578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288578 /DB_XREF=gi:14945303 /DB_XREF=UI-R-DK0-cdg-e-05-0-UI.s1 /CLONE=UI-R-DK0-cdg-e-05-0-UI /FEA=EST /CNT=9 /TID=Rn.46517.1 /TIER=Stack /STK=8 /UG=Rn.46517 /UG_TITLE=ESTs BI288578 1389258_at AI317840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI317840 /DB_XREF=gi:4033107 /DB_XREF=EST234511 /CLONE=RPPAA52 /FEA=EST /CNT=9 /TID=Rn.29045.1 /TIER=Stack /STK=8 /UG=Rn.29045 /UG_TITLE=ESTs AI317840 ring finger protein 138 Rnf138 94196 NM_053588 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1389259_at AA894084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894084 /DB_XREF=gi:3020963 /DB_XREF=EST197887 /CLONE=RSPAQ55 /FEA=EST /CNT=9 /TID=Rn.14852.1 /TIER=Stack /STK=8 /UG=Rn.14852 /UG_TITLE=ESTs AA894084 1389260_at AI008393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008393 /DB_XREF=gi:3222225 /DB_XREF=EST202844 /CLONE=REMAW70 /FEA=EST /CNT=9 /TID=Rn.7230.1 /TIER=Stack /STK=8 /UG=Rn.7230 /UG_TITLE=ESTs AI008393 UBX domain protein 6 Ubxn6 363332 NM_001108812 0005515 // protein binding // not recorded 1389261_at BI290739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290739 /DB_XREF=gi:14949594 /DB_XREF=UI-R-DK0-cfy-g-12-0-UI.s1 /CLONE=UI-R-DK0-cfy-g-12-0-UI /FEA=EST /CNT=8 /TID=Rn.38481.1 /TIER=Stack /STK=8 /UG=Rn.38481 /UG_TITLE=ESTs BI290739 similar to hypothetical protein MGC23280 RGD1305508 303275 XR_006091 /// XR_009409 1389262_at AI172156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172156 /DB_XREF=gi:3712196 /DB_XREF=EST218151 /CLONE=RMUBV64 /FEA=EST /CNT=8 /TID=Rn.22489.1 /TIER=Stack /STK=8 /UG=Rn.22489 /UG_TITLE=ESTs AI172156 1389263_at AI234852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234852 /DB_XREF=gi:3828358 /DB_XREF=EST231414 /CLONE=ROVCI64 /FEA=EST /CNT=8 /TID=Rn.25283.1 /TIER=Stack /STK=8 /UG=Rn.25283 /UG_TITLE=ESTs AI234852 retinoic acid induced 14 Rai14 294804 NM_001011947 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation 0005515 // protein binding // not recorded 1389264_at BI278594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278594 /DB_XREF=gi:14925595 /DB_XREF=UI-R-CW0-bxn-e-10-0-UI.s1 /CLONE=UI-R-CW0-bxn-e-10-0-UI /FEA=EST /CNT=8 /TID=Rn.28758.1 /TIER=Stack /STK=8 /UG=Rn.28758 /UG_TITLE=ESTs BI278594 ankyrin repeat domain 54 Ankrd54 362957 NM_001025285 0006913 // nucleocytoplasmic transport // not recorded /// 0007049 // cell cycle // not recorded /// 0010627 // regulation of intracellular protein kinase cascade // not recorded /// 0045648 // positive regulation of erythrocyte differentiation // not recorded /// 0045859 // regulation of protein kinase activity // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0030496 // midbody // not recorded 0005515 // protein binding // not recorded /// 0019887 // protein kinase regulator activity // not recorded /// 0032403 // protein complex binding // not recorded 1389265_at BI284270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284270 /DB_XREF=gi:14936795 /DB_XREF=UI-R-CX0s-ccq-b-08-0-UI.s1 /CLONE=UI-R-CX0s-ccq-b-08-0-UI /FEA=EST /CNT=8 /TID=Rn.29938.1 /TIER=Stack /STK=8 /UG=Rn.29938 /UG_TITLE=ESTs BI284270 glucan (1,4-alpha-), branching enzyme 1 Gbe1 288333 NM_001100502 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005978 // glycogen biosynthetic process // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0003844 // 1,4-alpha-glucan branching enzyme activity // inferred from direct assay /// 0003844 // 1,4-alpha-glucan branching enzyme activity // not recorded /// 0005529 // sugar binding // inferred from direct assay /// 0043169 // cation binding // inferred from electronic annotation 1389266_at BI296566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296566 /DB_XREF=gi:14961116 /DB_XREF=UI-R-CV2-cgs-f-11-0-UI.s1 /CLONE=UI-R-CV2-cgs-f-11-0-UI /FEA=EST /CNT=8 /TID=Rn.76513.1 /TIER=Stack /STK=8 /UG=Rn.76513 /UG_TITLE=ESTs BI296566 1389267_at BF394196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394196 /DB_XREF=gi:11379060 /DB_XREF=UI-R-CA0-bhb-e-10-0-UI.s1 /CLONE=UI-R-CA0-bhb-e-10-0-UI /FEA=EST /CNT=8 /TID=Rn.16311.1 /TIER=Stack /STK=8 /UG=Rn.16311 /UG_TITLE=ESTs BF394196 1389268_at BI285816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285816 /DB_XREF=gi:14939845 /DB_XREF=UI-R-CX0s-ccv-b-12-0-UI.s1 /CLONE=UI-R-CX0s-ccv-b-12-0-UI /FEA=EST /CNT=8 /TID=Rn.11799.1 /TIER=Stack /STK=8 /UG=Rn.11799 /UG_TITLE=ESTs BI285816 polymerase (DNA directed), lambda Poll 361767 NM_001014168 0006260 // DNA replication // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006289 // nucleotide-excision repair // inferred from electronic annotation /// 0006289 // nucleotide-excision repair // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389269_at BI285251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285251 /DB_XREF=gi:14938699 /DB_XREF=UI-R-DB0-byx-h-08-0-UI.s1 /CLONE=UI-R-DB0-byx-h-08-0-UI /FEA=EST /CNT=8 /TID=Rn.3701.1 /TIER=Stack /STK=8 /UG=Rn.3701 /UG_TITLE=ESTs BI285251 similar to RIKEN cDNA 4933433P14 gene RGD1308470 362778 NM_001014198 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389270_x_at AA893518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893518 /DB_XREF=gi:3020397 /DB_XREF=EST197321 /CLONE=RLIAD46 /FEA=EST /CNT=8 /TID=Rn.1658.5 /TIER=Stack /STK=8 /UG=Rn.1658 /LL=25392 /UG_GENE=Atpi /UG_TITLE=ATPase inhibitor (rat mitochondrial IF1 protein) AA893518 similar to Urinary protein 3 precursor (RUP-3) /// similar to Urinary protein 2 precursor (RUP-2) /// urinary protein 2 LOC680367 /// LOC680406 /// Rup2 619560 /// 680367 /// 680406 NM_001034950 /// XM_001056871 /// XM_001057058 /// XM_002727314 0005576 // extracellular region // inferred from electronic annotation 1389271_at BI274567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274567 /DB_XREF=gi:14885591 /DB_XREF=UI-R-CW0-bwl-d-03-0-UI.s1 /CLONE=UI-R-CW0-bwl-d-03-0-UI /FEA=EST /CNT=8 /TID=Rn.22235.1 /TIER=Stack /STK=8 /UG=Rn.22235 /UG_TITLE=ESTs, Weakly similar to MFGM RAT LACTADHERIN PRECURSOR (R.norvegicus) BI274567 vasorin Vasn 679921 NM_001109382 0005515 // protein binding // inferred from electronic annotation 1389272_at BF409302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409302 /DB_XREF=gi:11397277 /DB_XREF=UI-R-CA1-ble-d-09-0-UI.s1 /CLONE=UI-R-CA1-ble-d-09-0-UI /FEA=EST /CNT=8 /TID=Rn.62685.1 /TIER=Stack /STK=8 /UG=Rn.62685 /UG_TITLE=ESTs BF409302 1389273_at BG374362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374362 /DB_XREF=gi:13298834 /DB_XREF=UI-R-CV1-bso-e-01-0-UI.s1 /CLONE=UI-R-CV1-bso-e-01-0-UI /FEA=EST /CNT=8 /TID=Rn.9244.1 /TIER=Stack /STK=8 /UG=Rn.9244 /UG_TITLE=ESTs BG374362 ATG4 autophagy related 4 homolog B (S. cerevisiae) Atg4b 316640 NM_001025711 0000045 // autophagic vacuole assembly // not recorded /// 0006508 // proteolysis // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0006914 // autophagy // not recorded /// 0008152 // metabolic process // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1389274_at AA800803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800803 /DB_XREF=gi:4131541 /DB_XREF=EST190300 /CLONE=RLUAL62 /FEA=EST /CNT=8 /TID=Rn.2245.1 /TIER=Stack /STK=8 /UG=Rn.2245 /UG_TITLE=ESTs, Weakly similar to YNP5_CAEEL HYPOTHETICAL 28.3 KD PROTEIN T05G5.5 IN CHROMOSOME III (C.elegans) AA800803 dephospho-CoA kinase domain containing Dcakd 360639 NM_001007724 0015937 // coenzyme A biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004140 // dephospho-CoA kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1389275_at BM385271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385271 /DB_XREF=gi:18185324 /DB_XREF=UI-R-EB1-clf-j-06-0-UI.s1 /CLONE=UI-R-EB1-clf-j-06-0-UI /FEA=EST /CNT=8 /TID=Rn.9374.1 /TIER=Stack /STK=8 /UG=Rn.9374 /UG_TITLE=ESTs, Moderately similar to SH3-BINDING PROTEIN 3BP-1 (M.musculus) BM385271 SH3-domain binding protein 1 Sh3bp1 300067 NM_001171981 /// XM_001076209 /// XM_002726946 /// XM_002729830 /// XM_235500 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017124 // SH3 domain binding // not recorded 1389276_at BI275119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275119 /DB_XREF=gi:14886655 /DB_XREF=UI-R-CX0-bxb-g-11-0-UI.s1 /CLONE=UI-R-CX0-bxb-g-11-0-UI /FEA=EST /CNT=8 /TID=Rn.41120.1 /TIER=Stack /STK=8 /UG=Rn.41120 /UG_TITLE=ESTs BI275119 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1389277_at BI285258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285258 /DB_XREF=gi:14938713 /DB_XREF=UI-R-DB0-byy-a-04-0-UI.s1 /CLONE=UI-R-DB0-byy-a-04-0-UI /FEA=EST /CNT=8 /TID=Rn.12261.1 /TIER=Stack /STK=8 /UG=Rn.12261 /UG_TITLE=ESTs BI285258 similar to KIAA0368 RGD1306148 313196 XR_085838 /// XR_086255 0030433 // ER-associated protein catabolic process // not recorded 0000502 // proteasome complex // not recorded /// 0005634 // nucleus // not recorded /// 0005769 // early endosome // not recorded /// 0005770 // late endosome // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005802 // trans-Golgi network // not recorded /// 0005813 // centrosome // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0030134 // ER to Golgi transport vesicle // not recorded 0005488 // binding // inferred from electronic annotation 1389278_at BI282934 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282934 /DB_XREF=gi:14934191 /DB_XREF=UI-R-CW0s-ccf-a-11-0-UI.s1 /CLONE=UI-R-CW0s-ccf-a-11-0-UI /FEA=EST /CNT=8 /TID=Rn.19726.1 /TIER=Stack /STK=8 /UG=Rn.19726 /UG_TITLE=ESTs BI282934 TSPY-like 2 Tspyl2 302612 NM_001191618 /// XM_001064403 /// XM_217607 0006334 // nucleosome assembly // inferred from electronic annotation /// 0008156 // negative regulation of DNA replication // not recorded /// 0030308 // negative regulation of cell growth // not recorded /// 0045859 // regulation of protein kinase activity // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0005515 // protein binding // not recorded 1389279_at BM386204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386204 /DB_XREF=gi:18186257 /DB_XREF=UI-R-CN1-cjf-a-20-0-UI.s1 /CLONE=UI-R-CN1-cjf-a-20-0-UI /FEA=EST /CNT=8 /TID=Rn.29125.1 /TIER=Stack /STK=8 /UG=Rn.29125 /UG_TITLE=ESTs BM386204 1389280_at AI601965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI601965 /DB_XREF=gi:4611126 /DB_XREF=UI-R-Y0-uv-c-01-0-UI.s2 /CLONE=UI-R-Y0-uv-c-01-0-UI /FEA=EST /CNT=8 /TID=Rn.38915.1 /TIER=Stack /STK=8 /UG=Rn.38915 /UG_TITLE=ESTs AI601965 1389281_at BE116601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116601 /DB_XREF=gi:8508706 /DB_XREF=UI-R-BS1-ayd-b-05-0-UI.s1 /CLONE=UI-R-BS1-ayd-b-05-0-UI /FEA=EST /CNT=8 /TID=Rn.8592.1 /TIER=Stack /STK=8 /UG=Rn.8592 /UG_TITLE=ESTs BE116601 rCG31687-like LOC100361376 100361376 XM_002729875 /// XM_002729876 1389282_at BI292586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292586 /DB_XREF=gi:14953228 /DB_XREF=UI-R-DO0-ciw-k-12-0-UI.s1 /CLONE=UI-R-DO0-ciw-k-12-0-UI /FEA=EST /CNT=8 /TID=Rn.9462.1 /TIER=Stack /STK=8 /UG=Rn.9462 /UG_TITLE=ESTs BI292586 Integrin, alpha 3 Itga3 360606 NM_001108292 0001764 // neuron migration // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from mutant phenotype /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007342 // fusion of sperm to egg plasma membrane // not recorded /// 0007507 // heart development // inferred from expression pattern /// 0007613 // memory // not recorded /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0010634 // positive regulation of epithelial cell migration // inferred from mutant phenotype /// 0010811 // positive regulation of cell-substrate adhesion // inferred from mutant phenotype /// 0010976 // positive regulation of neuron projection development // inferred from mutant phenotype /// 0031345 // negative regulation of cell projection organization // inferred from mutant phenotype /// 0034698 // response to gonadotropin stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0060135 // maternal process involved in female pregnancy // inferred from expression pattern 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0008305 // integrin complex // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0019717 // synaptosome // not recorded /// 0030426 // growth cone // inferred from direct assay /// 0034667 // alpha3-beta1 integrin complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0001968 // fibronectin binding // inferred from direct assay /// 0004872 // receptor activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005518 // collagen binding // inferred from direct assay /// 0019904 // protein domain specific binding // inferred from mutant phenotype /// 0043236 // laminin binding // inferred from direct assay /// 0043236 // laminin binding // inferred from mutant phenotype /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1389283_at BF402613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402613 /DB_XREF=gi:11390588 /DB_XREF=UI-R-CA0-bhm-e-08-0-UI.s1 /CLONE=UI-R-CA0-bhm-e-08-0-UI /FEA=EST /CNT=8 /TID=Rn.62941.1 /TIER=Stack /STK=8 /UG=Rn.62941 /UG_TITLE=ESTs, Highly similar to T46473 hypothetical protein DKFZp434O1230.1 (H.sapiens) BF402613 1389284_at BI275747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275747 /DB_XREF=gi:14919964 /DB_XREF=UI-R-CX0-bxg-b-11-0-UI.s1 /CLONE=UI-R-CX0-bxg-b-11-0-UI /FEA=EST /CNT=8 /TID=Rn.3045.1 /TIER=Stack /STK=8 /UG=Rn.3045 /UG_TITLE=ESTs BI275747 1389285_at AI229933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229933 /DB_XREF=gi:3813820 /DB_XREF=EST226628 /CLONE=REMCO54 /FEA=EST /CNT=8 /TID=Rn.40382.1 /TIER=Stack /STK=8 /UG=Rn.40382 /UG_TITLE=ESTs AI229933 1389286_at AI232948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232948 /DB_XREF=gi:3816828 /DB_XREF=EST229636 /CLONE=RKICJ06 /FEA=EST /CNT=48 /TID=Rn.17866.1 /TIER=Stack /STK=7 /UG=Rn.17866 /UG_TITLE=ESTs, Weakly similar to T27038 hypothetical protein Y49E10.2 - Caenorhabditis elegans (C.elegans) AI232948 glutaredoxin 5 Glrx5 362776 NM_001108722 0045454 // cell redox homeostasis // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation 1389287_at BI279573 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279573 /DB_XREF=gi:14927518 /DB_XREF=UI-R-DE0-cae-b-06-0-UI.s1 /CLONE=UI-R-DE0-cae-b-06-0-UI /FEA=EST /CNT=36 /TID=Rn.13986.1 /TIER=Stack /STK=7 /UG=Rn.13986 /UG_TITLE=ESTs BI279573 1389288_at BI279838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279838 /DB_XREF=gi:14928036 /DB_XREF=UI-R-CU0s-cbr-e-08-0-UI.s1 /CLONE=UI-R-CU0s-cbr-e-08-0-UI /FEA=EST /CNT=21 /TID=Rn.14785.1 /TIER=Stack /STK=7 /UG=Rn.14785 /UG_TITLE=ESTs, Moderately similar to JC5824 NADH dehydrogenase (H.sapiens) BI279838 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2 Ndufa2 291660 NM_001106153 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // not recorded /// 0070469 // respiratory chain // inferred from electronic annotation 1389289_at AW534728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534728 /DB_XREF=gi:7177142 /DB_XREF=UI-R-BS0-anv-c-09-0-UI.s1 /CLONE=UI-R-BS0-anv-c-09-0-UI /FEA=EST /CNT=19 /TID=Rn.17061.1 /TIER=Stack /STK=7 /UG=Rn.17061 /UG_TITLE=ESTs, Highly similar to RNA-BINDING PROTEIN EWS (M.musculus) AW534728 Ewing sarcoma breakpoint region 1 Ewsr1 289752 NM_001025632 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0015030 // Cajal body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1389290_at AI172034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172034 /DB_XREF=gi:3712074 /DB_XREF=EST218029 /CLONE=RMUBU13 /FEA=EST /CNT=27 /TID=Rn.8642.1 /TIER=Stack /STK=6 /UG=Rn.8642 /UG_TITLE=ESTs, Highly similar to T46333 hypothetical protein DKFZp434J1813.1 (H.sapiens) AI172034 DnaJ (Hsp40) homolog, subfamily C, member 10 Dnajc10 295690 NM_001106486 0006457 // protein folding // inferred from electronic annotation /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1389291_at AA850511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850511 /DB_XREF=gi:4131851 /DB_XREF=EST193278 /CLONE=ROVAG57 /FEA=EST /CNT=20 /TID=Rn.3056.1 /TIER=Stack /STK=7 /UG=Rn.3056 /UG_TITLE=ESTs AA850511 coiled-coil-helix-coiled-coil-helix domain containing 3 Chchd3 296966 NM_001106588 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded 0005515 // protein binding // not recorded 1389292_at AI411439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411439 /DB_XREF=gi:4254943 /DB_XREF=EST239733 /CLONE=RKIEV80 /FEA=EST /CNT=26 /TID=Rn.17080.1 /TIER=Stack /STK=7 /UG=Rn.17080 /UG_TITLE=ESTs AI411439 RAB18, member RAS oncogene family Rab18 307039 NM_001012468 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation 1389293_at BM390250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390250 /DB_XREF=gi:18190303 /DB_XREF=UI-R-CN1-cjq-m-03-0-UI.s1 /CLONE=UI-R-CN1-cjq-m-03-0-UI /FEA=EST /CNT=21 /TID=Rn.8038.1 /TIER=Stack /STK=7 /UG=Rn.8038 /UG_TITLE=ESTs BM390250 cleavage and polyadenylation specific factor 2 Cpsf2 299256 NM_001106753 0006398 // histone mRNA 3'-end processing // not recorded /// 0008380 // RNA splicing // not recorded 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1389294_at AI103084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103084 /DB_XREF=gi:3707677 /DB_XREF=EST212373 /CLONE=REMBX09 /FEA=EST /CNT=15 /TID=Rn.11752.1 /TIER=Stack /STK=7 /UG=Rn.11752 /UG_TITLE=ESTs, Moderately similar to selective hybridizing clone (Mus musculus) (M.musculus) AI103084 cytoplasmic FMR1 interacting protein 1 Cyfip1 308666 NM_001107517 0030032 // lamellipodium assembly // not recorded /// 0048675 // axon extension // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005845 // mRNA cap binding complex // not recorded /// 0019717 // synaptosome // not recorded /// 0030027 // lamellipodium // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // not recorded 1389295_at AI411761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411761 /DB_XREF=gi:4255265 /DB_XREF=EST240055 /CLONE=RPLDJ12 /FEA=EST /CNT=15 /TID=Rn.13880.1 /TIER=Stack /STK=7 /UG=Rn.13880 /UG_TITLE=ESTs, Highly similar to T08771 hypothetical protein DKFZp586L151.1 (H.sapiens) AI411761 olfactomedin-like 2B Olfml2b 304960 NM_001107195 0030198 // extracellular matrix organization // not recorded 0031012 // extracellular matrix // not recorded 0042803 // protein homodimerization activity // not recorded /// 0050840 // extracellular matrix binding // not recorded 1389296_at AI104356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104356 /DB_XREF=gi:3708727 /DB_XREF=EST213645 /CLONE=RHECC25 /FEA=EST /CNT=14 /TID=Rn.14286.1 /TIER=Stack /STK=7 /UG=Rn.14286 /UG_TITLE=ESTs, Highly similar to Y103_HUMAN HYPOTHETICAL PROTEIN KIAA0103 (H.sapiens) AI104356 tetratricopeptide repeat domain 35 Ttc35 362905 NM_001113785 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded 0005488 // binding // inferred from electronic annotation 1389297_at AI146215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146215 /DB_XREF=gi:3668014 /DB_XREF=UI-R-E1-fb-f-12-0-UI.s1 /CLONE=UI-R-E1-fb-f-12-0-UI /FEA=EST /CNT=14 /TID=Rn.22214.1 /TIER=Stack /STK=7 /UG=Rn.22214 /UG_TITLE=ESTs AI146215 ERO1-like (S. cerevisiae) Ero1l 171562 NM_138528 0006457 // protein folding // not recorded /// 0006457 // protein folding // inferred from electronic annotation /// 0006467 // protein thiol-disulfide exchange // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // not recorded /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded /// 0051085 // chaperone mediated protein folding requiring cofactor // inferred from electronic annotation /// 0051085 // chaperone mediated protein folding requiring cofactor // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // not recorded /// 0016671 // oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1389298_at AI412864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412864 /DB_XREF=gi:4256368 /DB_XREF=EST241164 /CLONE=RBRED64 /FEA=EST /CNT=14 /TID=Rn.13358.1 /TIER=Stack /STK=7 /UG=Rn.13358 /UG_TITLE=ESTs AI412864 1389299_at BG673255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG673255 /DB_XREF=gi:13895354 /DB_XREF=DRNBRB07 /CLONE=DRNBRB07 /FEA=EST /CNT=19 /TID=Rn.2993.1 /TIER=Stack /STK=7 /UG=Rn.2993 /UG_TITLE=ESTs BG673255 phosphate cytidylyltransferase 1, choline, alpha Pcyt1a 140544 NM_078622 0006656 // phosphatidylcholine biosynthetic process // not recorded /// 0006656 // phosphatidylcholine biosynthetic process // traceable author statement /// 0006656 // phosphatidylcholine biosynthetic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009628 // response to abiotic stimulus // inferred from electronic annotation /// 0009628 // response to abiotic stimulus // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic to membrane // non-traceable author statement /// 0042587 // glycogen granule // inferred from electronic annotation /// 0042587 // glycogen granule // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004105 // choline-phosphate cytidylyltransferase activity // inferred from direct assay /// 0004105 // choline-phosphate cytidylyltransferase activity // inferred from electronic annotation /// 0008289 // lipid binding // inferred from mutant phenotype /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1389300_at AI410415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410415 /DB_XREF=gi:4253919 /DB_XREF=EST238708 /CLONE=RHECS02 /FEA=EST /CNT=17 /TID=Rn.22356.1 /TIER=Stack /STK=7 /UG=Rn.22356 /UG_TITLE=ESTs, Moderately similar to YG01_HUMAN HYPOTHETICAL 14.3 KDA PROTEIN A-211C6.1 (H.sapiens) AI410415 LYR motif containing 1 Lyrm1 365361 NM_001108918 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1389301_at AI176665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176665 /DB_XREF=gi:3727303 /DB_XREF=EST220257 /CLONE=ROVBV30 /FEA=EST /CNT=15 /TID=Rn.4140.1 /TIER=Stack /STK=7 /UG=Rn.4140 /UG_TITLE=ESTs AI176665 muscleblind-like 2 Mbnl2 680445 NM_001111064 0000381 // regulation of alternative nuclear mRNA splicing, via spliceosome // inferred from electronic annotation /// 0006376 // mRNA splice site selection // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0043484 // regulation of RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0010494 // stress granule // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1389302_at BI289482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289482 /DB_XREF=gi:14947098 /DB_XREF=UI-R-DK0-cfh-e-12-0-UI.s1 /CLONE=UI-R-DK0-cfh-e-12-0-UI /FEA=EST /CNT=15 /TID=Rn.22052.1 /TIER=Stack /STK=7 /UG=Rn.22052 /UG_TITLE=ESTs, Weakly similar to S30833 hypothetical protein YEL044w - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BI289482 INO80 complex subunit C Ino80c 291737 NM_001017446 0071339 // MLL1 complex // not recorded /// 0071339 // MLL1 complex // inferred from sequence or structural similarity 1389303_at AI411019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411019 /DB_XREF=gi:4254523 /DB_XREF=EST239313 /CLONE=RKIEG12 /FEA=EST /CNT=14 /TID=Rn.1607.1 /TIER=Stack /STK=7 /UG=Rn.1607 /UG_TITLE=ESTs AI411019 MIF4G domain containing Mif4gd 360659 NM_001014122 0006417 // regulation of translation // inferred from electronic annotation /// 0016070 // RNA metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded 1389304_at AI176323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176323 /DB_XREF=gi:3726961 /DB_XREF=EST219906 /CLONE=ROVBQ11 /FEA=EST /CNT=13 /TID=Rn.8185.1 /TIER=Stack /STK=7 /UG=Rn.8185 /UG_TITLE=ESTs AI176323 1389305_at BM385237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385237 /DB_XREF=gi:18185290 /DB_XREF=UI-R-EB1-clf-j-23-0-UI.s1 /CLONE=UI-R-EB1-clf-j-23-0-UI /FEA=EST /CNT=13 /TID=Rn.19270.2 /TIER=Stack /STK=7 /UG=Rn.19270 /LL=79124 /UG_GENE=Anxa4 /UG_TITLE=ZAP 36annexin IV BM385237 annexin A4 Anxa4 79124 NM_024155 0006887 // exocytosis // non-traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // not recorded 1389306_at BM387419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387419 /DB_XREF=gi:18187472 /DB_XREF=UI-R-CN1-cjj-a-02-0-UI.s1 /CLONE=UI-R-CN1-cjj-a-02-0-UI /FEA=EST /CNT=15 /TID=Rn.11758.1 /TIER=Stack /STK=7 /UG=Rn.11758 /UG_TITLE=ESTs, Moderately similar to MTN2 MOUSE MATRILIN-2 PRECURSOR (M.musculus) BM387419 matrilin 2 Matn2 299996 XM_001058523 /// XM_216941 0005578 // proteinaceous extracellular matrix // not recorded /// 0031012 // extracellular matrix // not recorded 1389307_at AW435479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435479 /DB_XREF=gi:6966786 /DB_XREF=UI-R-BJ0p-afu-h-10-0-UI.s1 /CLONE=UI-R-BJ0p-afu-h-10-0-UI /FEA=EST /CNT=14 /TID=Rn.7609.1 /TIER=Stack /STK=7 /UG=Rn.7609 /LL=29572 /UG_GENE=Aplp1 /UG_TITLE=amyloid beta (A4) precursor-like protein 1 AW435479 amyloid beta (A4) precursor-like protein 1 Aplp1 502317 NM_001100802 0006378 // mRNA polyadenylation // not recorded /// 0006417 // regulation of translation // not recorded /// 0030198 // extracellular matrix organization // not recorded /// 0030818 // negative regulation of cAMP biosynthetic process // not recorded /// 0030900 // forebrain development // not recorded 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0031694 // alpha-2A adrenergic receptor binding // not recorded /// 0031695 // alpha-2B adrenergic receptor binding // not recorded /// 0031696 // alpha-2C adrenergic receptor binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation 1389308_at BI295873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295873 /DB_XREF=gi:14959745 /DB_XREF=UI-R-DK0-cfb-f-05-0-UI.s1 /CLONE=UI-R-DK0-cfb-f-05-0-UI /FEA=EST /CNT=13 /TID=Rn.14603.1 /TIER=Stack /STK=7 /UG=Rn.14603 /UG_TITLE=ESTs, Weakly similar to T24938 hypothetical protein T15H9.1 - Caenorhabditis elegans (C.elegans) BI295873 DnaJ (Hsp40) homolog, subfamily B, member 11 Dnajb11 360734 NM_001015021 0006457 // protein folding // inferred from electronic annotation /// 0016556 // mRNA modification // inferred from electronic annotation /// 0016556 // mRNA modification // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // not recorded 1389309_at AW251323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251323 /DB_XREF=gi:6594914 /DB_XREF=UI-R-BJ0-adg-g-11-0-UI.s1 /CLONE=UI-R-BJ0-adg-g-11-0-UI /FEA=EST /CNT=13 /TID=Rn.12294.1 /TIER=Stack /STK=7 /UG=Rn.12294 /UG_TITLE=ESTs AW251323 strawberry notch homolog 1 (Drosophila) Sbno1 304470 NM_001107138 0003677 // DNA binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1389310_at BF400694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400694 /DB_XREF=gi:11388669 /DB_XREF=UI-R-CA0-bhe-d-05-0-UI.s1 /CLONE=UI-R-CA0-bhe-d-05-0-UI /FEA=EST /CNT=12 /TID=Rn.7568.1 /TIER=Stack /STK=7 /UG=Rn.7568 /UG_TITLE=ESTs BF400694 1389311_at AW915161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915161 /DB_XREF=gi:8080848 /DB_XREF=EST346465 /CLONE=RGICL49 /FEA=EST /CNT=12 /TID=Rn.22244.1 /TIER=Stack /STK=7 /UG=Rn.22244 /UG_TITLE=ESTs AW915161 1389312_at AI104484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104484 /DB_XREF=gi:3708831 /DB_XREF=EST213773 /CLONE=RHECE08 /FEA=EST /CNT=12 /TID=Rn.22312.1 /TIER=Stack /STK=7 /UG=Rn.22312 /UG_TITLE=ESTs, Highly similar to YC27_HUMAN HYPOTHETICAL PROTEIN CGI-27 (H.sapiens) AI104484 mediator of cell motility 1 Memo1 298787 NM_001029917 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded 1389313_at AI137972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137972 /DB_XREF=gi:3638749 /DB_XREF=UI-R-C0-hn-d-01-0-UI.s1 /CLONE=UI-R-C0-hn-d-01-0-UI /FEA=EST /CNT=12 /TID=Rn.12900.1 /TIER=Stack /STK=7 /UG=Rn.12900 /UG_TITLE=ESTs AI137972 1389314_at AW915489 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915489 /DB_XREF=gi:8081186 /DB_XREF=EST346793 /CLONE=RGICV94 /FEA=EST /CNT=12 /TID=Rn.8896.1 /TIER=Stack /STK=7 /UG=Rn.8896 /UG_TITLE=ESTs, Weakly similar to PEROXISOME ASSEMBLY FACTOR-2 (R.norvegicus) AW915489 nuclear VCP-like Nvl 289323 NM_001105980 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1389315_at AI408598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408598 /DB_XREF=gi:4252102 /DB_XREF=EST236888 /CLONE=ROVEJ24 /FEA=EST /CNT=16 /TID=Rn.37781.1 /TIER=Stack /STK=7 /UG=Rn.37781 /UG_TITLE=ESTs, Moderately similar to G protein-coupled receptor kinase-interactor 2, isoform 1; ARF GTPase-activating protein GIT2; cool-associated, tyrosine phosphorylated protein 2 (Homo sapiens) (H.sapiens) AI408598 G protein-coupled receptor kinase interacting ArfGAP 2 Git2 304546 NM_001005553 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1389316_at AW914946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW914946 /DB_XREF=gi:8080628 /DB_XREF=EST346250 /CLONE=RGIBM65 /FEA=EST /CNT=16 /TID=Rn.7604.1 /TIER=Stack /STK=7 /UG=Rn.7604 /UG_TITLE=ESTs, Highly similar to FAFX MOUSE PROBABLE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAF-X (M.musculus) AW914946 ubiquitin specific peptidase 9, X-linked Usp9x 363445 NM_001135893 /// NM_001135923 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0016579 // protein deubiquitination // not recorded /// 0030509 // BMP signaling pathway // not recorded 0005737 // cytoplasm // not recorded 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0070410 // co-SMAD binding // not recorded 1389317_at BF417627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417627 /DB_XREF=gi:11405616 /DB_XREF=UI-R-CN0-blq-c-12-0-UI.s1 /CLONE=UI-R-CN0-blq-c-12-0-UI /FEA=EST /CNT=15 /TID=Rn.19881.1 /TIER=Stack /STK=7 /UG=Rn.19881 /UG_TITLE=ESTs BF417627 transmembrane protein 127 Tmem127 311405 NM_001100978 0016021 // integral to membrane // inferred from electronic annotation 1389318_at BF282986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282986 /DB_XREF=gi:11214056 /DB_XREF=EST447577 /CLONE=RGIDV90 /FEA=EST /CNT=14 /TID=Rn.12655.1 /TIER=Stack /STK=7 /UG=Rn.12655 /UG_TITLE=ESTs BF282986 dishevelled associated activator of morphogenesis 1 Daam1 314212 NM_001108030 0016043 // cellular component organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from electronic annotation 1389319_at AA800719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800719 /DB_XREF=gi:2863674 /DB_XREF=EST190216 /CLONE=RLUAK63 /FEA=EST /CNT=13 /TID=Rn.6624.1 /TIER=Stack /STK=7 /UG=Rn.6624 /UG_TITLE=ESTs AA800719 mKIAA1181 protein-like LOC100364400 100364400 XM_002724596 1389320_at BF419881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419881 /DB_XREF=gi:11407870 /DB_XREF=UI-R-BJ2-bph-c-11-0-UI.s1 /CLONE=UI-R-BJ2-bph-c-11-0-UI /FEA=EST /CNT=13 /TID=Rn.3663.1 /TIER=Stack /STK=7 /UG=Rn.3663 /UG_TITLE=ESTs, Weakly similar to DY3.6.p (Caenorhabditis elegans) (C.elegans) BF419881 F-box protein 25 Fbxo25 364637 NM_001014239 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0019005 // SCF ubiquitin ligase complex // not recorded /// 0019005 // SCF ubiquitin ligase complex // inferred from sequence or structural similarity 0005515 // protein binding // not recorded 1389321_at BI292917 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292917 /DB_XREF=gi:14953904 /DB_XREF=UI-R-DO0-cix-b-20-0-UI.s1 /CLONE=UI-R-DO0-cix-b-20-0-UI /FEA=EST /CNT=12 /TID=Rn.19306.1 /TIER=Stack /STK=7 /UG=Rn.19306 /UG_TITLE=ESTs BI292917 1389322_at AI013847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013847 /DB_XREF=gi:3227903 /DB_XREF=EST208522 /CLONE=RSPBV58 /FEA=EST /CNT=12 /TID=Rn.8408.1 /TIER=Stack /STK=7 /UG=Rn.8408 /UG_TITLE=ESTs AI013847 programmed cell death 7 Pdcd7 363082 NM_001108768 0006915 // apoptosis // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0051384 // response to glucocorticoid stimulus // not recorded 0005689 // U12-type spliceosomal complex // not recorded 1389323_at BF282629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282629 /DB_XREF=gi:11213699 /DB_XREF=EST447220 /CLONE=RGIDR05 /FEA=EST /CNT=12 /TID=Rn.3698.1 /TIER=Stack /STK=7 /UG=Rn.3698 /UG_TITLE=ESTs, Weakly similar to GBB1 RAT GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)G(S)G(T) BETA SUBUNIT 1 (R.norvegicus) BF282629 WD repeat domain 61 Wdr61 363064 NM_001025743 0005515 // protein binding // not recorded 1389324_at BI289129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289129 /DB_XREF=gi:14946385 /DB_XREF=UI-R-DK0-cfe-g-11-0-UI.s1 /CLONE=UI-R-DK0-cfe-g-11-0-UI /FEA=EST /CNT=12 /TID=Rn.13171.1 /TIER=Stack /STK=7 /UG=Rn.13171 /UG_TITLE=ESTs, Weakly similar to protein-tyrosine kinase (R.norvegicus) BI289129 tyrosine kinase with immunoglobulin-like and EGF-like domains 1 Tie1 89806 NM_053545 0001570 // vasculogenesis // inferred from direct assay /// 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // not recorded /// 0016525 // negative regulation of angiogenesis // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // not recorded /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0032526 // response to retinoic acid // not recorded /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0045026 // plasma membrane fusion // not recorded /// 0045026 // plasma membrane fusion // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1389325_at AA848545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848545 /DB_XREF=gi:2936085 /DB_XREF=EST191305 /CLONE=RKIAC95 /FEA=EST /CNT=11 /TID=Rn.1176.1 /TIER=Stack /STK=7 /UG=Rn.1176 /UG_TITLE=ESTs, Weakly similar to T19253 hypothetical protein C14A4.11 - Caenorhabditis elegans (C.elegans) AA848545 programmed cell death 10 Pdcd10 494345 NM_001009542 0001525 // angiogenesis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // not recorded /// 0043406 // positive regulation of MAP kinase activity // inferred from sequence or structural similarity /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1389326_at AI103093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103093 /DB_XREF=gi:3704824 /DB_XREF=EST212382 /CLONE=REMBX20 /FEA=EST /CNT=11 /TID=Rn.3711.1 /TIER=Stack /STK=7 /UG=Rn.3711 /UG_TITLE=ESTs, Highly similar to AC13_HUMAN ACTIVATOR 1 38 KD SUBUNIT (H.sapiens) AI103093 replication factor C (activator 1) 3 Rfc3 288414 NM_001009629 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded /// 0006297 // nucleotide-excision repair, DNA gap filling // not recorded /// 0046683 // response to organophosphorus // inferred from electronic annotation /// 0046683 // response to organophosphorus // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005663 // DNA replication factor C complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1389327_at BF282675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282675 /DB_XREF=gi:11213745 /DB_XREF=EST447266 /CLONE=RGIDR55 /FEA=EST /CNT=11 /TID=Rn.13489.1 /TIER=Stack /STK=7 /UG=Rn.13489 /UG_TITLE=ESTs, Weakly similar to C30C11.1.p (Caenorhabditis elegans) (C.elegans) BF282675 mitochondrial ribosomal protein L32 Mrpl32 291206 NM_001106116 0006412 // translation // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005762 // mitochondrial large ribosomal subunit // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1389328_at BM385029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385029 /DB_XREF=gi:18185082 /DB_XREF=UI-R-CN1-cjm-o-16-0-UI.s2 /CLONE=UI-R-CN1-cjm-o-16-0-UI /FEA=EST /CNT=11 /TID=Rn.24320.1 /TIER=Stack /STK=7 /UG=Rn.24320 /UG_TITLE=ESTs BM385029 splicing factor 3a, subunit 1 Sf3a1 305479 NM_001107235 0000398 // nuclear mRNA splicing, via spliceosome // not recorded /// 0006396 // RNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // not recorded /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // not recorded /// 0005681 // spliceosomal complex // not recorded /// 0005684 // U2-type spliceosomal complex // not recorded /// 0005730 // nucleolus // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // not recorded 1389329_at AI411914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411914 /DB_XREF=gi:4255418 /DB_XREF=EST240208 /CLONE=RKIER10 /FEA=EST /CNT=11 /TID=Rn.24164.1 /TIER=Stack /STK=7 /UG=Rn.24164 /UG_TITLE=ESTs AI411914 lectin, galactoside-binding, soluble, 8 Lgals8 116641 NM_053862 0005737 // cytoplasm // inferred from electronic annotation 0005529 // sugar binding // inferred from electronic annotation 1389330_at AA894060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894060 /DB_XREF=gi:3020939 /DB_XREF=EST197863 /CLONE=RSPAQ14 /FEA=EST /CNT=11 /TID=Rn.22760.1 /TIER=Stack /STK=7 /UG=Rn.22760 /UG_TITLE=ESTs, Highly similar to SL52 RAT SODIUMGLUCOSE COTRANSPORTER 2 (R.norvegicus) AA894060 similar to cDNA sequence BC017158 RGD1310127 361654 NM_001035517 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1389331_at AI104371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104371 /DB_XREF=gi:3708741 /DB_XREF=EST213660 /CLONE=RHECC42 /FEA=EST /CNT=11 /TID=Rn.8597.1 /TIER=Stack /STK=7 /UG=Rn.8597 /UG_TITLE=ESTs AI104371 1389332_at BF283404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283404 /DB_XREF=gi:11214474 /DB_XREF=EST447995 /CLONE=RGIEB53 /FEA=EST /CNT=11 /TID=Rn.13202.1 /TIER=Stack /STK=7 /UG=Rn.13202 /UG_TITLE=ESTs BF283404 1389333_at AI407074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407074 /DB_XREF=gi:4250578 /DB_XREF=EST235362 /CLONE=ROVDR95 /FEA=EST /CNT=11 /TID=Rn.22333.1 /TIER=Stack /STK=7 /UG=Rn.22333 /UG_TITLE=ESTs, Weakly similar to BVECAG apaG protein - Escherichia coli (E.coli) AI407074 F-box protein 3 Fbxo3 690634 NM_001109606 0005634 // nucleus // inferred from electronic annotation 1389334_at BI277594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277594 /DB_XREF=gi:14923619 /DB_XREF=UI-R-CY0-bxt-b-03-0-UI.s1 /CLONE=UI-R-CY0-bxt-b-03-0-UI /FEA=EST /CNT=15 /TID=Rn.12471.1 /TIER=Stack /STK=7 /UG=Rn.12471 /UG_TITLE=ESTs, Moderately similar to NADH-ubiquinone oxidoreductase 42 kDa subunit (H.sapiens) BI277594 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10 /// NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10-like 1 Ndufa10 /// Ndufa10l1 316632 /// 678759 NM_182671 /// NM_199495 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1389335_at BM387479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387479 /DB_XREF=gi:18187532 /DB_XREF=UI-R-CN1-cjj-k-12-0-UI.s1 /CLONE=UI-R-CN1-cjj-k-12-0-UI /FEA=EST /CNT=12 /TID=Rn.47944.1 /TIER=Stack /STK=7 /UG=Rn.47944 /UG_TITLE=ESTs BM387479 DDB1 and CUL4 associated factor 5 Dcaf5 314273 NM_001100718 /// XM_001080939 /// XM_234345 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0080008 // CUL4 RING ubiquitin ligase complex // inferred from electronic annotation /// 0080008 // CUL4 RING ubiquitin ligase complex // not recorded 1389336_at BM390893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390893 /DB_XREF=gi:18190946 /DB_XREF=UI-R-CN1-cjp-g-17-0-UI.s1 /CLONE=UI-R-CN1-cjp-g-17-0-UI /FEA=EST /CNT=12 /TID=Rn.41651.1 /TIER=Stack /STK=7 /UG=Rn.41651 /UG_TITLE=ESTs BM390893 processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae) Pop5 117241 NM_001105752 0008033 // tRNA processing // inferred from electronic annotation /// 0008033 // tRNA processing // not recorded /// 0016070 // RNA metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005655 // nucleolar ribonuclease P complex // not recorded 0004526 // ribonuclease P activity // inferred from electronic annotation /// 0004526 // ribonuclease P activity // not recorded /// 0004540 // ribonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389337_at AA946032 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946032 /DB_XREF=gi:3105948 /DB_XREF=EST201531 /CLONE=RLUBA37 /FEA=EST /CNT=12 /TID=Rn.7972.1 /TIER=Stack /STK=7 /UG=Rn.7972 /UG_TITLE=ESTs AA946032 1389338_at AA875518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875518 /DB_XREF=gi:4231396 /DB_XREF=UI-R-E0-ct-d-12-0-UI.s1 /CLONE=UI-R-E0-ct-d-12-0-UI /FEA=EST /CNT=12 /TID=Rn.3826.1 /TIER=Stack /STK=7 /UG=Rn.3826 /UG_TITLE=ESTs AA875518 transmembrane protein 126B Tmem126b 293114 NM_001106280 0016021 // integral to membrane // inferred from electronic annotation 1389339_at BF284062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284062 /DB_XREF=gi:11215132 /DB_XREF=EST448653 /CLONE=RGIEK49 /FEA=EST /CNT=12 /TID=Rn.23323.1 /TIER=Stack /STK=7 /UG=Rn.23323 /UG_TITLE=ESTs BF284062 1389340_at BI294227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294227 /DB_XREF=gi:14956485 /DB_XREF=UI-R-DK0-cea-b-10-0-UI.s1 /CLONE=UI-R-DK0-cea-b-10-0-UI /FEA=EST /CNT=11 /TID=Rn.20552.1 /TIER=Stack /STK=7 /UG=Rn.20552 /UG_TITLE=ESTs BI294227 zinc finger protein 318 Zfp318 685082 XM_001062211 /// XM_002727181 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1389341_at AI102248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102248 /DB_XREF=gi:4134070 /DB_XREF=EST211537 /CLONE=RBRCB08 /FEA=EST /CNT=11 /TID=Rn.21111.1 /TIER=Stack /STK=7 /UG=Rn.21111 /UG_TITLE=ESTs AI102248 plexin D1 Plxnd1 312652 NM_001107881 0001569 // patterning of blood vessels // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0060666 // dichotomous subdivision of terminal units involved in salivary gland branching // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017154 // semaphorin receptor activity // not recorded 1389342_at AI112988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112988 /DB_XREF=gi:3512937 /DB_XREF=UI-R-E1-go-h-08-0-UI.s1 /CLONE=UI-R-E1-go-h-08-0-UI /FEA=EST /CNT=11 /TID=Rn.9434.1 /TIER=Stack /STK=7 /UG=Rn.9434 /UG_TITLE=ESTs AI112988 T-cell acute lymphocytic leukemia 1 Tal1 313507 NM_001107958 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0030097 // hemopoiesis // not recorded /// 0030218 // erythrocyte differentiation // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045648 // positive regulation of erythrocyte differentiation // not recorded 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0033193 // Lsd1/2 complex // not recorded /// 0043234 // protein complex // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0019899 // enzyme binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded 1389343_at H35203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H35203 /DB_XREF=gi:980620 /DB_XREF=EST106002 /CLONE=RPCAW26 /FEA=EST /CNT=11 /TID=Rn.14670.1 /TIER=Stack /STK=7 /UG=Rn.14670 /UG_TITLE=ESTs, Weakly similar to S78709 protein YCL057c-a - yeast (Saccharomyces cerevisiae) (S.cerevisiae) H35203 hypothetical protein LOC100361944 /// similar to Hypothetical UPF0327 protein LOC100361944 /// RGD1560187 100361944 /// 362641 NM_001173556 /// XM_001071412 /// XM_002726642 /// XM_002726754 /// XM_002729554 /// XM_002729637 /// XM_342957 0005739 // mitochondrion // not recorded 1389344_at BE109258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109258 /DB_XREF=gi:8501363 /DB_XREF=UI-R-BS1-azd-g-02-0-UI.s1 /CLONE=UI-R-BS1-azd-g-02-0-UI /FEA=EST /CNT=11 /TID=Rn.65738.1 /TIER=Stack /STK=7 /UG=Rn.65738 /UG_TITLE=ESTs, Weakly similar to UBP2_MOUSE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 (UBIQUITIN THIOLESTERASE 2) (UBIQUITIN-SPECIFIC PROCESSING PROTEASE 2) (DEUBIQUITINATING ENZYME 2) (41 KDA UBIQUITIN-SPECIFIC PROTEASE) (M.musculus) BE109258 ubiquitin specific peptidase 39 Usp39 297336 NM_001106597 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389345_at AI231218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231218 /DB_XREF=gi:4135624 /DB_XREF=EST227906 /CLONE=REMDH28 /FEA=EST /CNT=11 /TID=Rn.12533.1 /TIER=Stack /STK=7 /UG=Rn.12533 /UG_TITLE=ESTs AI231218 1389346_at BI274136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274136 /DB_XREF=gi:14884775 /DB_XREF=UI-R-CW0-bwf-d-06-0-UI.s1 /CLONE=UI-R-CW0-bwf-d-06-0-UI /FEA=EST /CNT=11 /TID=Rn.16443.1 /TIER=Stack /STK=7 /UG=Rn.16443 /UG_TITLE=ESTs BI274136 activity-dependent neuroprotector homeobox Adnp 64622 NM_022681 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007614 // short-term memory // inferred from direct assay /// 0009743 // response to carbohydrate stimulus // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010629 // negative regulation of gene expression // inferred from direct assay /// 0010835 // regulation of protein ADP-ribosylation // inferred from direct assay /// 0010976 // positive regulation of neuron projection development // inferred from direct assay /// 0030828 // positive regulation of cGMP biosynthetic process // inferred from direct assay /// 0031668 // cellular response to extracellular stimulus // inferred from expression pattern /// 0032091 // negative regulation of protein binding // inferred from direct assay /// 0032147 // activation of protein kinase activity // inferred from direct assay /// 0033484 // nitric oxide homeostasis // inferred from direct assay /// 0043524 // negative regulation of neuron apoptosis // inferred from direct assay /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043526 // neuroprotection // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045773 // positive regulation of axon extension // inferred from direct assay /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050805 // negative regulation of synaptic transmission // inferred from mutant phenotype /// 0051965 // positive regulation of synaptogenesis // inferred from direct assay /// 0060206 // estrous cycle phase // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // inferred from physical interaction 1389347_at BE100607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100607 /DB_XREF=gi:8492503 /DB_XREF=UI-R-BJ1-auk-d-04-0-UI.s1 /CLONE=UI-R-BJ1-auk-d-04-0-UI /FEA=EST /CNT=10 /TID=Rn.34622.1 /TIER=Stack /STK=7 /UG=Rn.34622 /UG_TITLE=ESTs, Highly similar to JC5615 membrane-associated phosphatidyl inositol transfer protein - mouse (M.musculus) BE100607 phosphatidylinositol transfer protein, membrane-associated 1 Pitpnm1 361694 NM_001008369 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005811 // lipid particle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0046872 // metal ion binding // inferred from electronic annotation 1389348_at BF282442 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282442 /DB_XREF=gi:11213512 /DB_XREF=EST447033 /CLONE=RGIDN42 /FEA=EST /CNT=10 /TID=Rn.8860.1 /TIER=Stack /STK=7 /UG=Rn.8860 /UG_TITLE=ESTs, Highly similar to A45142 cleavage stimulation factor 50K chain (H.sapiens) BF282442 cleavage stimulation factor, 3' pre-RNA, subunit 1 Cstf1 311670 NM_001013161 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389349_s_at BM383766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383766 /DB_XREF=gi:18183819 /DB_XREF=UI-R-DM1-ckb-d-11-0-UI.s1 /CLONE=UI-R-DM1-ckb-d-11-0-UI /FEA=EST /CNT=10 /TID=Rn.17451.1 /TIER=Stack /STK=7 /UG=Rn.17451 /UG_TITLE=ESTs BM383766 interleukin 17 receptor E Il17re 362417 NM_001004091 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation 1389350_at AI180413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180413 /DB_XREF=gi:3731051 /DB_XREF=EST224158 /CLONE=RSPCX38 /FEA=EST /CNT=10 /TID=Rn.1824.1 /TIER=Stack /STK=7 /UG=Rn.1824 /UG_TITLE=ESTs, Highly similar to BETA-2-GLYCOPROTEIN I PRECURSOR (R.norvegicus) AI180413 apolipoprotein H (beta-2-glycoprotein I) Apoh 287774 NM_001009626 0001937 // negative regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // not recorded /// 0007596 // blood coagulation // inferred from mutant phenotype /// 0007597 // blood coagulation, intrinsic pathway // inferred from electronic annotation /// 0007597 // blood coagulation, intrinsic pathway // not recorded /// 0010596 // negative regulation of endothelial cell migration // inferred from electronic annotation /// 0010596 // negative regulation of endothelial cell migration // not recorded /// 0016525 // negative regulation of angiogenesis // inferred from electronic annotation /// 0016525 // negative regulation of angiogenesis // not recorded /// 0030193 // regulation of blood coagulation // not recorded /// 0030193 // regulation of blood coagulation // inferred from electronic annotation /// 0030195 // negative regulation of blood coagulation // inferred from electronic annotation /// 0030195 // negative regulation of blood coagulation // not recorded /// 0031100 // organ regeneration // inferred from mutant phenotype /// 0031639 // plasminogen activation // inferred from electronic annotation /// 0031639 // plasminogen activation // not recorded /// 0033033 // negative regulation of myeloid cell apoptosis // inferred from electronic annotation /// 0033033 // negative regulation of myeloid cell apoptosis // not recorded /// 0034197 // triglyceride transport // inferred from direct assay /// 0034392 // negative regulation of smooth muscle cell apoptosis // inferred from electronic annotation /// 0034392 // negative regulation of smooth muscle cell apoptosis // not recorded /// 0051006 // positive regulation of lipoprotein lipase activity // inferred from electronic annotation /// 0051006 // positive regulation of lipoprotein lipase activity // not recorded /// 0051917 // regulation of fibrinolysis // not recorded /// 0051917 // regulation of fibrinolysis // inferred from electronic annotation /// 0051918 // negative regulation of fibrinolysis // inferred from electronic annotation /// 0051918 // negative regulation of fibrinolysis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0031012 // extracellular matrix // not recorded /// 0034361 // very-low-density lipoprotein particle // inferred from electronic annotation /// 0034361 // very-low-density lipoprotein particle // not recorded /// 0034364 // high-density lipoprotein particle // inferred from electronic annotation /// 0034364 // high-density lipoprotein particle // not recorded /// 0042627 // chylomicron // inferred from electronic annotation /// 0042627 // chylomicron // not recorded 0001948 // glycoprotein binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005543 // phospholipid binding // not recorded /// 0008201 // heparin binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from direct assay /// 0008289 // lipid binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0043499 // eukaryotic cell surface binding // inferred from electronic annotation /// 0043499 // eukaryotic cell surface binding // not recorded /// 0060230 // lipoprotein lipase activator activity // inferred from electronic annotation /// 0060230 // lipoprotein lipase activator activity // not recorded 1389351_at BM387864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387864 /DB_XREF=gi:18187917 /DB_XREF=UI-R-CN1-cjk-f-23-0-UI.s1 /CLONE=UI-R-CN1-cjk-f-23-0-UI /FEA=EST /CNT=10 /TID=Rn.26327.1 /TIER=Stack /STK=7 /UG=Rn.26327 /UG_TITLE=ESTs BM387864 leucine rich repeat (in FLII) interacting protein 1 Lrrfip1 367314 NM_001014269 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1389352_at BF281980 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281980 /DB_XREF=gi:11213050 /DB_XREF=EST446571 /CLONE=RGIDA32 /FEA=EST /CNT=10 /TID=Rn.14154.1 /TIER=Stack /STK=7 /UG=Rn.14154 /UG_TITLE=ESTs BF281980 1389353_at BM386525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386525 /DB_XREF=gi:18186578 /DB_XREF=UI-R-CN1-cjg-a-08-0-UI.s1 /CLONE=UI-R-CN1-cjg-a-08-0-UI /FEA=EST /CNT=10 /TID=Rn.8257.1 /TIER=Stack /STK=7 /UG=Rn.8257 /UG_TITLE=ESTs BM386525 sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D Sema6d 311384 NM_001107768 0007275 // multicellular organismal development // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0030215 // semaphorin receptor binding // not recorded 1389354_at BF285490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285490 /DB_XREF=gi:11216470 /DB_XREF=EST449991 /CLONE=RGIFF35 /FEA=EST /CNT=10 /TID=Rn.20103.1 /TIER=Stack /STK=7 /UG=Rn.20103 /UG_TITLE=ESTs, Moderately similar to GIPC_MOUSE GAIP C-terminus interacting protein GIPC (RGS-GAIP interacting protein) (Synectin) (SemaF cytoplasmic domain associated protein 1) (SEMCAP-1) (M.musculus) BF285490 GIPC PDZ domain containing family, member 2 /// GIPC PDZ domain containing family, member 2 Gipc2 /// LOC100361187 100361187 /// 365960 NM_001037210 /// XR_086187 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389355_at BF285187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285187 /DB_XREF=gi:11216257 /DB_XREF=EST449778 /CLONE=RGIFB52 /FEA=EST /CNT=10 /TID=Rn.8590.1 /TIER=Stack /STK=7 /UG=Rn.8590 /UG_TITLE=ESTs BF285187 immediate early response 5 Ier5 498256 NM_001025137 1389356_at AW915885 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915885 /DB_XREF=gi:8081596 /DB_XREF=EST347189 /CLONE=RGIDC09 /FEA=EST /CNT=10 /TID=Rn.9326.1 /TIER=Stack /STK=7 /UG=Rn.9326 /UG_TITLE=ESTs AW915885 1389357_at AW532663 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532663 /DB_XREF=gi:7175077 /DB_XREF=UI-R-BS0-amk-f-03-0-UI.s1 /CLONE=UI-R-BS0-amk-f-03-0-UI /FEA=EST /CNT=10 /TID=Rn.28778.1 /TIER=Stack /STK=7 /UG=Rn.28778 /UG_TITLE=ESTs AW532663 MORC family CW-type zinc finger 2 Morc2 289736 NM_001106016 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1389358_at BF282740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282740 /DB_XREF=gi:11213810 /DB_XREF=EST447331 /CLONE=RGIDS39 /FEA=EST /CNT=10 /TID=Rn.28333.1 /TIER=Stack /STK=7 /UG=Rn.28333 /UG_TITLE=ESTs BF282740 Similar to lysophosphatidylglycerol acyltransferase 1 LOC679692 679692 NM_001109376 0008152 // metabolic process // inferred from electronic annotation 0005737 // cytoplasm // not recorded 0008415 // acyltransferase activity // inferred from electronic annotation 1389359_at BE120823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120823 /DB_XREF=gi:8512928 /DB_XREF=UI-R-BS1-azs-h-10-0-UI.s1 /CLONE=UI-R-BS1-azs-h-10-0-UI /FEA=EST /CNT=10 /TID=Rn.3162.1 /TIER=Stack /STK=7 /UG=Rn.3162 /UG_TITLE=ESTs, Weakly similar to SMC-protein (R.norvegicus) BE120823 structural maintenance of chromosomes 4 Smc4 295107 NM_001037185 0007076 // mitotic chromosome condensation // inferred from electronic annotation /// 0007076 // mitotic chromosome condensation // not recorded 0000796 // condensin complex // inferred from electronic annotation /// 0000796 // condensin complex // not recorded /// 0005694 // chromosome // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1389360_at AI009597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009597 /DB_XREF=gi:4133071 /DB_XREF=EST204048 /CLONE=RLUBG14 /FEA=EST /CNT=10 /TID=Rn.3896.1 /TIER=Stack /STK=7 /UG=Rn.3896 /LL=116831 /UG_GENE=Fxyd3 /UG_TITLE=FXYD domain-containing ion transport regulator 3 AI009597 FXYD domain-containing ion transport regulator 3 Fxyd3 116831 NM_172317 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // non-traceable author statement /// 0006811 // ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation 1389361_at AI012506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012506 /DB_XREF=gi:3226338 /DB_XREF=EST206957 /CLONE=RPLAY17 /FEA=EST /CNT=10 /TID=Rn.19522.1 /TIER=Stack /STK=7 /UG=Rn.19522 /UG_TITLE=ESTs, Weakly similar to T32597 hypothetical protein C04C3.5 - Caenorhabditis elegans (C.elegans) AI012506 clusterin associated protein 1 Cluap1 363544 NM_001014225 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // not recorded 1389362_at AI317821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI317821 /DB_XREF=gi:4033088 /DB_XREF=EST234492 /CLONE=RPPAA28 /FEA=EST /CNT=10 /TID=Rn.22271.1 /TIER=Stack /STK=7 /UG=Rn.22271 /UG_TITLE=ESTs, Moderately similar to PTN3_HUMAN PROTEIN TYROSINE PHOSPHATASE, NON-RECEPTOR TYPE 3 (H.sapiens) AI317821 protein tyrosine phosphatase, non-receptor type 3 Ptpn3 362524 XM_001055793 /// XM_001059757 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0045930 // negative regulation of mitotic cell cycle // inferred from electronic annotation /// 0051045 // negative regulation of membrane protein ectodomain proteolysis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0019898 // extrinsic to membrane // inferred from electronic annotation 0001784 // phosphotyrosine binding // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0051117 // ATPase binding // inferred from electronic annotation 1389363_at AA997430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997430 /DB_XREF=gi:4283505 /DB_XREF=UI-R-C0-hr-g-06-0-UI.s1 /CLONE=UI-R-C0-hr-g-06-0-UI /FEA=EST /CNT=15 /TID=Rn.12694.1 /TIER=Stack /STK=7 /UG=Rn.12694 /UG_TITLE=ESTs, Weakly similar to F42F12.4.p (Caenorhabditis elegans) (C.elegans) AA997430 acireductone dioxygenase 1 Adi1 298934 NM_199097 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009086 // methionine biosynthetic process // inferred from electronic annotation /// 0019509 // L-methionine salvage from methylthioadenosine // not recorded /// 0019509 // L-methionine salvage from methylthioadenosine // inferred from sequence or structural similarity /// 0019509 // L-methionine salvage from methylthioadenosine // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from sequence or structural similarity /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051213 // dioxygenase activity // inferred from electronic annotation 1389364_at BF406709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406709 /DB_XREF=gi:11394684 /DB_XREF=UI-R-BJ2-bpo-c-01-0-UI.s1 /CLONE=UI-R-BJ2-bpo-c-01-0-UI /FEA=EST /CNT=13 /TID=Rn.6852.2 /TIER=Stack /STK=7 /UG=Rn.6852 /UG_TITLE=ESTs BF406709 Nedd4 family interacting protein 2 Ndfip2 361089 NM_001108390 0010629 // negative regulation of gene expression // not recorded /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0032410 // negative regulation of transporter activity // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0051224 // negative regulation of protein transport // not recorded 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0004871 // signal transducer activity // not recorded /// 0005515 // protein binding // not recorded /// 0050699 // WW domain binding // not recorded 1389365_at AI228291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228291 /DB_XREF=gi:3812178 /DB_XREF=EST224986 /CLONE=RBRCS84 /FEA=EST /CNT=12 /TID=Rn.2361.1 /TIER=Stack /STK=7 /UG=Rn.2361 /UG_TITLE=ESTs AI228291 similar to CG3740-PA LOC690000 690000 XM_001073988 /// XM_002725609 /// XM_002728734 1389366_at BI293689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293689 /DB_XREF=gi:14955425 /DB_XREF=UI-R-DK0-cdu-e-09-0-UI.s1 /CLONE=UI-R-DK0-cdu-e-09-0-UI /FEA=EST /CNT=11 /TID=Rn.12466.1 /TIER=Stack /STK=7 /UG=Rn.12466 /UG_TITLE=ESTs, Weakly similar to ZF94_RAT ZINC FINGER PROTEIN 94 (ZFP-94) (ZINC FINGER PROTEIN Y1) (RLZF-Y) (R.norvegicus) BI293689 zinc finger protein 553 Znf553 308991 XM_001080163 /// XM_219345 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1389367_at AI409747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409747 /DB_XREF=gi:4253251 /DB_XREF=EST238039 /CLONE=RPLDI25 /FEA=EST /CNT=11 /TID=Rn.22212.1 /TIER=Stack /STK=7 /UG=Rn.22212 /UG_TITLE=ESTs AI409747 schwannomin interacting protein 1 Schip1 295105 NM_001100666 0001553 // luteinization // not recorded /// 0001822 // kidney development // not recorded /// 0006807 // nitrogen compound metabolic process // not recorded /// 0008210 // estrogen metabolic process // not recorded /// 0008585 // female gonad development // not recorded /// 0009791 // post-embryonic development // not recorded /// 0010761 // fibroblast migration // not recorded /// 0048008 // platelet-derived growth factor receptor signaling pathway // not recorded /// 0048705 // skeletal system morphogenesis // not recorded /// 0048745 // smooth muscle tissue development // not recorded /// 0060021 // palate development // not recorded /// 0060325 // face morphogenesis // not recorded 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1389368_at AW253242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253242 /DB_XREF=gi:6596833 /DB_XREF=UI-R-BJ0-aek-d-01-0-UI.s1 /CLONE=UI-R-BJ0-aek-d-01-0-UI /FEA=EST /CNT=11 /TID=Rn.19948.1 /TIER=Stack /STK=7 /UG=Rn.19948 /UG_TITLE=ESTs AW253242 Cnksr family member 3 Cnksr3 308113 NM_001012061 0009966 // regulation of signal transduction // inferred from electronic annotation /// 0010765 // positive regulation of sodium ion transport // not recorded /// 0010765 // positive regulation of sodium ion transport // inferred from sequence or structural similarity /// 0010765 // positive regulation of sodium ion transport // inferred from electronic annotation /// 0033137 // negative regulation of peptidyl-serine phosphorylation // not recorded /// 0033137 // negative regulation of peptidyl-serine phosphorylation // inferred from sequence or structural similarity /// 0033137 // negative regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0070373 // negative regulation of ERK1 and ERK2 cascade // not recorded /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from sequence or structural similarity /// 0070373 // negative regulation of ERK1 and ERK2 cascade // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1389369_at BF289017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289017 /DB_XREF=gi:11220087 /DB_XREF=EST453608 /CLONE=RGIHA28 /FEA=EST /CNT=11 /TID=Rn.35929.1 /TIER=Stack /STK=7 /UG=Rn.35929 /UG_TITLE=ESTs BF289017 1389370_at AW914993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW914993 /DB_XREF=gi:8080677 /DB_XREF=EST346297 /CLONE=RGIBN26 /FEA=EST /CNT=11 /TID=Rn.24149.1 /TIER=Stack /STK=7 /UG=Rn.24149 /UG_TITLE=ESTs, Highly similar to PHF1_MOUSE PHD FINGER PROTEIN 1 (PHF1 PROTEIN) (T-COMPLEX TESTIS-EXPRESSED 3) (POLYCOMBLIKE 1) (MPCL1) (M.musculus) AW914993 PHD finger protein 1 Phf1 294287 NM_212538 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389371_at AI104077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104077 /DB_XREF=gi:3708495 /DB_XREF=EST213366 /CLONE=RHEBX02 /FEA=EST /CNT=10 /TID=Rn.30301.1 /TIER=Stack /STK=7 /UG=Rn.30301 /UG_TITLE=ESTs AI104077 1389372_at BF394221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394221 /DB_XREF=gi:11379085 /DB_XREF=UI-R-CA0-bhc-b-04-0-UI.s1 /CLONE=UI-R-CA0-bhc-b-04-0-UI /FEA=EST /CNT=10 /TID=Rn.4255.1 /TIER=Stack /STK=7 /UG=Rn.4255 /UG_TITLE=ESTs BF394221 Similar to hypothetical protein RGD1308489 313340 XR_007342 /// XR_086260 1389373_at AI029555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029555 /DB_XREF=gi:4299368 /DB_XREF=UI-R-C0-ix-b-07-0-UI.s1 /CLONE=UI-R-C0-ix-b-07-0-UI /FEA=EST /CNT=10 /TID=Rn.11544.1 /TIER=Stack /STK=7 /UG=Rn.11544 /UG_TITLE=ESTs AI029555 SMAD family member 1 Smad1 25671 NM_013130 0000165 // MAPKKK cascade // inferred from mutant phenotype /// 0000165 // MAPKKK cascade // not recorded /// 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001710 // mesodermal cell fate commitment // inferred from electronic annotation /// 0001710 // mesodermal cell fate commitment // not recorded /// 0001822 // kidney development // inferred from expression pattern /// 0002051 // osteoblast fate commitment // inferred from electronic annotation /// 0002051 // osteoblast fate commitment // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007183 // SMAD protein complex assembly // inferred from electronic annotation /// 0007183 // SMAD protein complex assembly // not recorded /// 0007276 // gamete generation // inferred from electronic annotation /// 0007276 // gamete generation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009880 // embryonic pattern specification // inferred from sequence or structural similarity /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0030509 // BMP signaling pathway // inferred from mutant phenotype /// 0030509 // BMP signaling pathway // not recorded /// 0030509 // BMP signaling pathway // inferred from sequence or structural similarity /// 0030901 // midbrain development // inferred from electronic annotation /// 0030901 // midbrain development // not recorded /// 0030902 // hindbrain development // inferred from electronic annotation /// 0030902 // hindbrain development // not recorded /// 0042060 // wound healing // inferred from expression pattern /// 0042493 // response to drug // inferred from direct assay /// 0042592 // homeostatic process // inferred from electronic annotation /// 0042592 // homeostatic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // inferred from direct assay /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045768 // positive regulation of anti-apoptosis // inferred from expression pattern /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0050775 // positive regulation of dendrite morphogenesis // inferred from expression pattern /// 0061036 // positive regulation of cartilage development // inferred from electronic annotation /// 0061036 // positive regulation of cartilage development // not recorded /// 0071407 // cellular response to organic cyclic substance // inferred from electronic annotation /// 0071407 // cellular response to organic cyclic substance // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005637 // nuclear inner membrane // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0070410 // co-SMAD binding // inferred from electronic annotation /// 0070410 // co-SMAD binding // not recorded /// 0070411 // I-SMAD binding // inferred from electronic annotation /// 0070411 // I-SMAD binding // not recorded 1389374_at BI295100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295100 /DB_XREF=gi:14958208 /DB_XREF=UI-R-DK0-cef-g-11-0-UI.s1 /CLONE=UI-R-DK0-cef-g-11-0-UI /FEA=EST /CNT=10 /TID=Rn.14753.1 /TIER=Stack /STK=7 /UG=Rn.14753 /UG_TITLE=ESTs BI295100 kinesin family member C3 Kifc3 307644 NM_001103352 0007017 // microtubule-based process // not recorded /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007030 // Golgi organization // not recorded /// 0007030 // Golgi organization // inferred from electronic annotation /// 0045218 // zonula adherens maintenance // not recorded /// 0045218 // zonula adherens maintenance // inferred from electronic annotation /// 0090136 // epithelial cell-cell adhesion // not recorded /// 0090136 // epithelial cell-cell adhesion // inferred from electronic annotation 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005871 // kinesin complex // not recorded /// 0005871 // kinesin complex // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005915 // zonula adherens // not recorded /// 0005915 // zonula adherens // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1389375_at AI232407 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232407 /DB_XREF=gi:3816287 /DB_XREF=EST229095 /CLONE=RKICB32 /FEA=EST /CNT=10 /TID=Rn.24638.1 /TIER=Stack /STK=7 /UG=Rn.24638 /UG_TITLE=ESTs AI232407 1389376_at BE113330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113330 /DB_XREF=gi:8505400 /DB_XREF=UI-R-BJ1-awd-g-05-0-UI.s1 /CLONE=UI-R-BJ1-awd-g-05-0-UI /FEA=EST /CNT=10 /TID=Rn.28147.1 /TIER=Stack /STK=7 /UG=Rn.28147 /UG_TITLE=ESTs BE113330 1389377_at AA851803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851803 /DB_XREF=gi:2939343 /DB_XREF=EST194571 /CLONE=RSPAJ92 /FEA=EST /CNT=10 /TID=Rn.8474.1 /TIER=Stack /STK=7 /UG=Rn.8474 /UG_TITLE=ESTs AA851803 insulin induced gene 2 Insig2 288985 NM_178091 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // not recorded /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // not recorded /// 0006991 // response to sterol depletion // inferred from electronic annotation /// 0006991 // response to sterol depletion // not recorded /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0010894 // negative regulation of steroid biosynthetic process // inferred from electronic annotation /// 0010894 // negative regulation of steroid biosynthetic process // not recorded /// 0016126 // sterol biosynthetic process // not recorded /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0030967 // ER-nuclear sterol response pathway // not recorded /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0033993 // response to lipid // inferred from expression pattern /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0042474 // middle ear morphogenesis // inferred from electronic annotation /// 0042474 // middle ear morphogenesis // not recorded /// 0045717 // negative regulation of fatty acid biosynthetic process // inferred from electronic annotation /// 0045717 // negative regulation of fatty acid biosynthetic process // not recorded /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded /// 0060363 // cranial suture morphogenesis // inferred from electronic annotation /// 0060363 // cranial suture morphogenesis // not recorded /// 0070542 // response to fatty acid // inferred from expression pattern 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032937 // SREBP-SCAP-Insig complex // not recorded 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // inferred from direct assay 1389378_at AI599324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599324 /DB_XREF=gi:4608372 /DB_XREF=EST251027 /CLONE=REMEO12 /FEA=EST /CNT=10 /TID=Rn.25133.1 /TIER=Stack /STK=7 /UG=Rn.25133 /UG_TITLE=ESTs, Weakly similar to A42973 serum protein MSE55 (H.sapiens) AI599324 CDC42 effector protein (Rho GTPase binding) 5 Cdc42ep5 361505 NM_001108469 0007254 // JNK cascade // not recorded /// 0007266 // Rho protein signal transduction // not recorded /// 0008360 // regulation of cell shape // not recorded /// 0030838 // positive regulation of actin filament polymerization // not recorded /// 0031274 // positive regulation of pseudopodium assembly // not recorded 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // not recorded 0005515 // protein binding // not recorded /// 0017049 // GTP-Rho binding // not recorded 1389379_at AI011967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011967 /DB_XREF=gi:4133533 /DB_XREF=EST206418 /CLONE=RPLAR07 /FEA=EST /CNT=10 /TID=Rn.16133.1 /TIER=Stack /STK=7 /UG=Rn.16133 /UG_TITLE=ESTs AI011967 1389380_at AI012181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012181 /DB_XREF=gi:4133591 /DB_XREF=EST206632 /CLONE=RPLAT68 /FEA=EST /CNT=10 /TID=Rn.17105.1 /TIER=Stack /STK=7 /UG=Rn.17105 /UG_TITLE=ESTs, Highly similar to tetrahydrofolylpolyglutamate synthase (M.musculus) AI012181 folylpolyglutamate synthase Fpgs 687266 NM_001146125 0001889 // liver development // inferred from expression pattern /// 0007420 // brain development // inferred from expression pattern /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009396 // folic acid and derivative biosynthetic process // inferred from electronic annotation /// 0031100 // organ regeneration // inferred from expression pattern /// 0042221 // response to chemical stimulus // inferred from expression pattern 0005739 // mitochondrion // not recorded 0004326 // tetrahydrofolylpolyglutamate synthase activity // inferred from direct assay /// 0004326 // tetrahydrofolylpolyglutamate synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1389381_at AI411586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411586 /DB_XREF=gi:4255090 /DB_XREF=EST239880 /CLONE=ROVET14 /FEA=EST /CNT=10 /TID=Rn.54602.1 /TIER=Stack /STK=7 /UG=Rn.54602 /UG_TITLE=ESTs, Highly similar to PKC-zeta-interacting protein (R.norvegicus) AI411586 sequestosome 1 Sqstm1 113894 NM_175843 /// NM_181550 0001934 // positive regulation of protein phosphorylation // inferred from direct assay /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0016236 // macroautophagy // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation /// 0043122 // regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043122 // regulation of I-kappaB kinase/NF-kappaB cascade // inferred from sequence or structural similarity /// 0051291 // protein heterooligomerization // inferred from physical interaction 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005080 // protein kinase C binding // inferred from direct assay /// 0005080 // protein kinase C binding // not recorded /// 0005080 // protein kinase C binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0042169 // SH2 domain binding // not recorded /// 0042169 // SH2 domain binding // inferred from sequence or structural similarity /// 0043130 // ubiquitin binding // not recorded /// 0043130 // ubiquitin binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1389382_at BI277034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277034 /DB_XREF=gi:14922521 /DB_XREF=UI-R-CY0-bxp-d-10-0-UI.s1 /CLONE=UI-R-CY0-bxp-d-10-0-UI /FEA=EST /CNT=9 /TID=Rn.48610.1 /TIER=Stack /STK=7 /UG=Rn.48610 /UG_TITLE=ESTs, Weakly similar to G01614 zinc finger protein 127 (H.sapiens) BI277034 makorin, ring finger protein, 2 Mkrn2 297525 NM_001008314 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389383_at BI289855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289855 /DB_XREF=gi:14947861 /DB_XREF=UI-R-DK0-cfp-a-09-0-UI.s1 /CLONE=UI-R-DK0-cfp-a-09-0-UI /FEA=EST /CNT=9 /TID=Rn.17203.1 /TIER=Stack /STK=7 /UG=Rn.17203 /UG_TITLE=ESTs BI289855 SEC24 family, member A (S. cerevisiae) Sec24a 287275 NM_001105780 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded 0030127 // COPII vesicle coat // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1389384_at BE111733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111733 /DB_XREF=gi:8503838 /DB_XREF=UI-R-BJ1-avx-b-10-0-UI.s1 /CLONE=UI-R-BJ1-avx-b-10-0-UI /FEA=EST /CNT=9 /TID=Rn.17400.1 /TIER=Stack /STK=7 /UG=Rn.17400 /UG_TITLE=ESTs BE111733 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4 Ndufaf4 362495 NM_198783 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0032981 // mitochondrial respiratory chain complex I assembly // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0031966 // mitochondrial membrane // not recorded 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation 1389385_at BM390324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390324 /DB_XREF=gi:18190377 /DB_XREF=UI-R-CN1-cjq-k-02-0-UI.s1 /CLONE=UI-R-CN1-cjq-k-02-0-UI /FEA=EST /CNT=9 /TID=Rn.3741.1 /TIER=Stack /STK=7 /UG=Rn.3741 /UG_TITLE=ESTs, Weakly similar to K03E6.4.p (Caenorhabditis elegans) (C.elegans) BM390324 B9 protein domain 1 B9d1 287383 NM_001105786 0005515 // protein binding // not recorded 1389386_at AI170759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170759 /DB_XREF=gi:4134540 /DB_XREF=EST216698 /CLONE=RMUBB15 /FEA=EST /CNT=9 /TID=Rn.2102.1 /TIER=Stack /STK=7 /UG=Rn.2102 /UG_TITLE=ESTs AI170759 1389387_at BF561377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561377 /DB_XREF=gi:11671107 /DB_XREF=UI-R-C0-hq-f-02-0-UI.r1 /CLONE=UI-R-C0-hq-f-02-0-UI /FEA=EST /CNT=9 /TID=Rn.17460.1 /TIER=Stack /STK=7 /UG=Rn.17460 /UG_TITLE=ESTs BF561377 similar to Proteasome inhibitor PI31 subunit LOC689852 689852 NM_001101005 0000502 // proteasome complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1389388_at BF291161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291161 /DB_XREF=gi:11222231 /DB_XREF=EST455752 /CLONE=RGIIJ51 /FEA=EST /CNT=9 /TID=Rn.25261.1 /TIER=Stack /STK=7 /UG=Rn.25261 /UG_TITLE=ESTs BF291161 1389389_at BF420168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420168 /DB_XREF=gi:11408157 /DB_XREF=UI-R-BJ2-bpj-g-04-0-UI.s1 /CLONE=UI-R-BJ2-bpj-g-04-0-UI /FEA=EST /CNT=9 /TID=Rn.39458.1 /TIER=Stack /STK=7 /UG=Rn.39458 /UG_TITLE=ESTs, Weakly similar to T08433 helicase homolog hlc - fruit fly (D.melanogaster) BF420168 DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 Ddx56 289780 NM_001004211 0006364 // rRNA processing // traceable author statement 0005634 // nucleus // traceable author statement /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // traceable author statement /// 0005730 // nucleolus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // traceable author statement /// 0004386 // helicase activity // inferred from electronic annotation /// 0004386 // helicase activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // traceable author statement /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1389390_at AI599847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599847 /DB_XREF=gi:4608895 /DB_XREF=EST251550 /CLONE=REMEM79 /FEA=EST /CNT=15 /TID=Rn.38676.1 /TIER=Stack /STK=7 /UG=Rn.38676 /UG_TITLE=ESTs, Weakly similar to T13387 hypothetical protein 115C2.8 - fruit fly (Drosophila melanogaster) (D.melanogaster) AI599847 GATA zinc finger domain containing 1 Gatad1 500005 XM_001068512 /// XM_575359 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1389391_at AI411981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411981 /DB_XREF=gi:4255485 /DB_XREF=EST240275 /CLONE=RKIEJ24 /FEA=EST /CNT=11 /TID=Rn.21084.1 /TIER=Stack /STK=7 /UG=Rn.21084 /UG_TITLE=ESTs AI411981 solute carrier family 35, member E3 Slc35e3 362883 NM_001134687 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1389392_at BF399468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399468 /DB_XREF=gi:11384476 /DB_XREF=UI-R-CA1-bjb-n-19-0-UI.s1 /CLONE=UI-R-CA1-bjb-n-19-0-UI /FEA=EST /CNT=11 /TID=Rn.7226.1 /TIER=Stack /STK=7 /UG=Rn.7226 /UG_TITLE=ESTs BF399468 Chloride channel 6 Clcn6 295586 NM_001106479 0006821 // chloride transport // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005247 // voltage-gated chloride channel activity // inferred from electronic annotation 1389393_at AI232269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232269 /DB_XREF=gi:3816149 /DB_XREF=EST228957 /CLONE=RKIBZ50 /FEA=EST /CNT=11 /TID=Rn.12230.1 /TIER=Stack /STK=7 /UG=Rn.12230 /UG_TITLE=ESTs AI232269 family with sequence similarity 108, member C1 Fam108c1 361601 NM_001100736 0006508 // proteolysis // inferred from electronic annotation 0008236 // serine-type peptidase activity // inferred from electronic annotation 1389394_at AI411809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411809 /DB_XREF=gi:4255313 /DB_XREF=EST240103 /CLONE=RKIDN14 /FEA=EST /CNT=10 /TID=Rn.23552.1 /TIER=Stack /STK=7 /UG=Rn.23552 /UG_TITLE=ESTs AI411809 1389395_at BI275654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275654 /DB_XREF=gi:14919778 /DB_XREF=UI-R-CW0-bwm-b-02-0-UI.s1 /CLONE=UI-R-CW0-bwm-b-02-0-UI /FEA=EST /CNT=10 /TID=Rn.15108.1 /TIER=Stack /STK=7 /UG=Rn.15108 /UG_TITLE=ESTs BI275654 1389396_at BE329273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329273 /DB_XREF=gi:9203049 /DB_XREF=hq34c03.x1 /CLONE=IMAGE:3121252 /FEA=EST /CNT=10 /TID=Rn.48146.1 /TIER=Stack /STK=7 /UG=Rn.48146 /UG_TITLE=ESTs BE329273 1389397_at AI234012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234012 /DB_XREF=gi:3817892 /DB_XREF=EST230700 /CLONE=RLUCU09 /FEA=EST /CNT=10 /TID=Rn.13858.1 /TIER=Stack /STK=7 /UG=Rn.13858 /UG_TITLE=ESTs AI234012 1389398_at AI172141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172141 /DB_XREF=gi:3712181 /DB_XREF=EST218136 /CLONE=RMUBV42 /FEA=EST /CNT=9 /TID=Rn.20868.1 /TIER=Stack /STK=7 /UG=Rn.20868 /UG_TITLE=ESTs, Highly similar to 1921313A ankyrin R (R.norvegicus) AI172141 ankyrin 1, erythrocytic Ank1 306570 NM_001107322 0006779 // porphyrin biosynthetic process // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0015672 // monovalent inorganic cation transport // not recorded /// 0048821 // erythrocyte development // not recorded 0005634 // nucleus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0014731 // spectrin-associated cytoskeleton // not recorded /// 0016020 // membrane // not recorded /// 0016529 // sarcoplasmic reticulum // inferred from direct assay /// 0019717 // synaptosome // inferred from direct assay /// 0030018 // Z disc // inferred from direct assay /// 0030673 // axolemma // inferred from direct assay /// 0030863 // cortical cytoskeleton // not recorded /// 0031430 // M band // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008093 // cytoskeletal adaptor activity // not recorded /// 0030507 // spectrin binding // not recorded 1389399_at BG372451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372451 /DB_XREF=gi:13268988 /DB_XREF=UI-R-CV1-bsc-h-11-0-UI.s1 /CLONE=UI-R-CV1-bsc-h-11-0-UI /FEA=EST /CNT=9 /TID=Rn.25199.1 /TIER=Stack /STK=7 /UG=Rn.25199 /UG_TITLE=ESTs BG372451 similar to RIKEN cDNA 0610039J04 RGD1562218 292100 NM_001034919 1389400_at AW531716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531716 /DB_XREF=gi:7174130 /DB_XREF=UI-R-C4-alk-c-04-0-UI.s1 /CLONE=UI-R-C4-alk-c-04-0-UI /FEA=EST /CNT=9 /TID=Rn.25022.1 /TIER=Stack /STK=7 /UG=Rn.25022 /UG_TITLE=ESTs AW531716 similar to Msx2-interacting protein (SPEN homolog) (SMART/HDAC1-associated repressor protein) LOC690911 690911 XM_002729562 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1389401_at BI294956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294956 /DB_XREF=gi:14957918 /DB_XREF=UI-R-DK0-cee-a-12-0-UI.s1 /CLONE=UI-R-DK0-cee-a-12-0-UI /FEA=EST /CNT=9 /TID=Rn.19398.1 /TIER=Stack /STK=7 /UG=Rn.19398 /UG_TITLE=ESTs BI294956 1389402_at AI178746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178746 /DB_XREF=gi:4135093 /DB_XREF=EST222428 /CLONE=RSPBK56 /FEA=EST /CNT=9 /TID=Rn.8793.1 /TIER=Stack /STK=7 /UG=Rn.8793 /UG_TITLE=ESTs AI178746 cysteine-serine-rich nuclear protein 1 Csrnp1 363165 NM_001108786 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0009791 // post-embryonic development // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048008 // platelet-derived growth factor receptor signaling pathway // not recorded /// 0048705 // skeletal system morphogenesis // not recorded /// 0060021 // palate development // not recorded /// 0060325 // face morphogenesis // not recorded 0005634 // nucleus // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // not recorded 1389403_at AI013715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013715 /DB_XREF=gi:3227771 /DB_XREF=EST208390 /CLONE=RSPBS03 /FEA=EST /CNT=9 /TID=Rn.18030.1 /TIER=Stack /STK=7 /UG=Rn.18030 /UG_TITLE=ESTs, Moderately similar to BMP6 RAT BONE MORPHOGENETIC PROTEIN 6 PRECURSOR (R.norvegicus) AI013715 bone morphogenetic protein 7 Bmp7 85272 NM_001191856 /// XM_001053727 /// XM_342591 0001654 // eye development // not recorded /// 0001654 // eye development // inferred from electronic annotation /// 0001656 // metanephros development // not recorded /// 0001656 // metanephros development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // inferred from sequence or structural similarity /// 0001707 // mesoderm formation // not recorded /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0001822 // kidney development // inferred from electronic annotation /// 0001823 // mesonephros development // not recorded /// 0001823 // mesonephros development // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0007435 // salivary gland morphogenesis // not recorded /// 0007435 // salivary gland morphogenesis // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009880 // embryonic pattern specification // not recorded /// 0009880 // embryonic pattern specification // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from sequence or structural similarity /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // not recorded /// 0030501 // positive regulation of bone mineralization // inferred from electronic annotation /// 0030509 // BMP signaling pathway // not recorded /// 0030509 // BMP signaling pathway // traceable author statement /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0032582 // negative regulation of gene-specific transcription // inferred from electronic annotation /// 0032582 // negative regulation of gene-specific transcription // inferred from sequence or structural similarity /// 0033280 // response to vitamin D // inferred from expression pattern /// 0034504 // protein localization in nucleus // not recorded /// 0034504 // protein localization in nucleus // inferred from electronic annotation /// 0034504 // protein localization in nucleus // inferred from sequence or structural similarity /// 0035239 // tube morphogenesis // not recorded /// 0035239 // tube morphogenesis // inferred from electronic annotation /// 0040007 // growth // inferred from electronic annotation /// 0042325 // regulation of phosphorylation // inferred from mutant phenotype /// 0042326 // negative regulation of phosphorylation // not recorded /// 0042326 // negative regulation of phosphorylation // inferred from electronic annotation /// 0042326 // negative regulation of phosphorylation // inferred from sequence or structural similarity /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043401 // steroid hormone mediated signaling pathway // not recorded /// 0043407 // negative regulation of MAP kinase activity // not recorded /// 0043407 // negative regulation of MAP kinase activity // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // inferred from sequence or structural similarity /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045597 // positive regulation of cell differentiation // not recorded /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045746 // negative regulation of Notch signaling pathway // not recorded /// 0045746 // negative regulation of Notch signaling pathway // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // not recorded /// 0045786 // negative regulation of cell cycle // inferred from electronic annotation /// 0045839 // negative regulation of mitosis // not recorded /// 0045839 // negative regulation of mitosis // inferred from electronic annotation /// 0045839 // negative regulation of mitosis // inferred from sequence or structural similarity /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048468 // cell development // not recorded /// 0048468 // cell development // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // not recorded /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0048596 // embryonic camera-type eye morphogenesis // not recorded /// 0048596 // embryonic camera-type eye morphogenesis // inferred from electronic annotation /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded /// 0048646 // anatomical structure formation involved in morphogenesis // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048762 // mesenchymal cell differentiation // not recorded /// 0048762 // mesenchymal cell differentiation // inferred from electronic annotation /// 0048762 // mesenchymal cell differentiation // inferred from sequence or structural similarity /// 0050768 // negative regulation of neurogenesis // not recorded /// 0050768 // negative regulation of neurogenesis // inferred from electronic annotation /// 0060272 // embryonic skeletal joint morphogenesis // not recorded /// 0060272 // embryonic skeletal joint morphogenesis // inferred from electronic annotation /// 0060389 // pathway-restricted SMAD protein phosphorylation // not recorded /// 0060389 // pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // not recorded /// 0060395 // SMAD protein signal transduction // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // inferred from sequence or structural similarity /// 0060445 // branching involved in salivary gland morphogenesis // not recorded /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060485 // mesenchyme development // not recorded /// 0060485 // mesenchyme development // inferred from electronic annotation /// 0060485 // mesenchyme development // inferred from sequence or structural similarity /// 0060548 // negative regulation of cell death // not recorded /// 0060548 // negative regulation of cell death // inferred from electronic annotation /// 0060548 // negative regulation of cell death // inferred from sequence or structural similarity /// 0060686 // negative regulation of prostatic bud formation // not recorded /// 0060686 // negative regulation of prostatic bud formation // inferred from electronic annotation /// 0060687 // regulation of branching involved in prostate gland morphogenesis // not recorded /// 0060687 // regulation of branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0072040 // negative regulation of mesenchymal stem cell apoptosis involved in nephron morphogenesis // not recorded /// 0072040 // negative regulation of mesenchymal stem cell apoptosis involved in nephron morphogenesis // inferred from electronic annotation /// 0072125 // negative regulation of glomerular mesangial cell proliferation // not recorded /// 0072125 // negative regulation of glomerular mesangial cell proliferation // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from direct assay /// 0031988 // membrane-bounded vesicle // inferred from direct assay 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from direct assay 1389404_at AI008883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008883 /DB_XREF=gi:3222715 /DB_XREF=EST203334 /CLONE=REMBE77 /FEA=EST /CNT=9 /TID=Rn.3227.1 /TIER=Stack /STK=7 /UG=Rn.3227 /UG_TITLE=ESTs AI008883 forkhead box S1 Foxs1 311547 NM_001012091 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0043433 // negative regulation of transcription factor activity // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1389405_at BG378880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378880 /DB_XREF=gi:13303352 /DB_XREF=UI-R-CV1-bvt-h-11-0-UI.s1 /CLONE=UI-R-CV1-bvt-h-11-0-UI /FEA=EST /CNT=9 /TID=Rn.25474.1 /TIER=Stack /STK=7 /UG=Rn.25474 /UG_TITLE=ESTs BG378880 Similar to chromodomain helicase DNA binding protein 9 LOC680231 680231 XM_002725383 /// XM_002725384 /// XM_002728588 0006333 // chromatin assembly or disassembly // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1389406_at BI296349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296349 /DB_XREF=gi:14960693 /DB_XREF=UI-R-DK0-cez-c-12-0-UI.s1 /CLONE=UI-R-DK0-cez-c-12-0-UI /FEA=EST /CNT=9 /TID=Rn.18853.1 /TIER=Stack /STK=7 /UG=Rn.18853 /UG_TITLE=ESTs BI296349 chromosome 1 open reading frame, human C6orf35 /// CG11699-like C1H6orf35 /// LOC100362950 100362950 /// 292228 NM_001144860 /// XM_002728649 1389407_at BE099453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099453 /DB_XREF=gi:8491294 /DB_XREF=UI-R-BJ1-atw-b-10-0-UI.s1 /CLONE=UI-R-BJ1-atw-b-10-0-UI /FEA=EST /CNT=9 /TID=Rn.18628.1 /TIER=Stack /STK=7 /UG=Rn.18628 /UG_TITLE=ESTs, Weakly similar to short-chain alcohol dehydrogenase (Caenorhabditis elegans) (C.elegans) BE099453 dehydrogenase/reductase (SDR family) member 1 Dhrs1 290234 NM_001007621 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1389408_at BG379338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379338 /DB_XREF=gi:13303810 /DB_XREF=UI-R-CS0-btu-f-05-0-UI.s1 /CLONE=UI-R-CS0-btu-f-05-0-UI /FEA=EST /CNT=9 /TID=Rn.14395.1 /TIER=Stack /STK=7 /UG=Rn.14395 /UG_TITLE=ESTs BG379338 ribonucleotide reductase M2 Rrm2 362720 NM_001025740 0006260 // DNA replication // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0009186 // deoxyribonucleoside diphosphate metabolic process // inferred from electronic annotation /// 0009262 // deoxyribonucleotide metabolic process // not recorded /// 0009263 // deoxyribonucleotide biosynthetic process // not recorded /// 0009263 // deoxyribonucleotide biosynthetic process // inferred from sequence or structural similarity /// 0051259 // protein oligomerization // not recorded /// 0051290 // protein heterotetramerization // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004748 // ribonucleoside-diphosphate reductase activity // not recorded /// 0004748 // ribonucleoside-diphosphate reductase activity // inferred from sequence or structural similarity /// 0004748 // ribonucleoside-diphosphate reductase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046914 // transition metal ion binding // inferred from electronic annotation 1389409_at AI177869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177869 /DB_XREF=gi:3728507 /DB_XREF=EST221518 /CLONE=RPLCH63 /FEA=EST /CNT=9 /TID=Rn.16200.1 /TIER=Stack /STK=7 /UG=Rn.16200 /UG_TITLE=ESTs, Weakly similar to four and a half LIM domains 2 (Rattus norvegicus) (R.norvegicus) AI177869 testis derived transcript Tes 500040 NM_001039344 0005737 // cytoplasm // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389410_s_at AI412389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412389 /DB_XREF=gi:4255893 /DB_XREF=EST240687 /CLONE=RBRDW87 /FEA=EST /CNT=9 /TID=Rn.11601.1 /TIER=Stack /STK=7 /UG=Rn.11601 /UG_TITLE=ESTs AI412389 1389411_at AW435329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435329 /DB_XREF=gi:6966636 /DB_XREF=UI-R-BJ0p-afc-c-05-0-UI.s1 /CLONE=UI-R-BJ0p-afc-c-05-0-UI /FEA=EST /CNT=8 /TID=Rn.19666.1 /TIER=Stack /STK=7 /UG=Rn.19666 /UG_TITLE=ESTs AW435329 1389412_at AA800693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800693 /DB_XREF=gi:2863648 /DB_XREF=EST190190 /CLONE=RLUAK36 /FEA=EST /CNT=8 /TID=Rn.6620.1 /TIER=Stack /STK=7 /UG=Rn.6620 /UG_TITLE=ESTs AA800693 1389413_at BI279325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279325 /DB_XREF=gi:14927033 /DB_XREF=UI-R-DA0-byn-a-04-0-UI.s1 /CLONE=UI-R-DA0-byn-a-04-0-UI /FEA=EST /CNT=8 /TID=Rn.22401.1 /TIER=Stack /STK=7 /UG=Rn.22401 /UG_TITLE=ESTs, Moderately similar to A36462 probable transmembrane protein Evi-2 precursor - mouse (M.musculus) BI279325 ecotropic viral integration site 2A Evi2a 685433 NM_001044287 0016021 // integral to membrane // inferred from electronic annotation 1389414_at BI285335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285335 /DB_XREF=gi:14938864 /DB_XREF=UI-R-DB0-byy-h-03-0-UI.s1 /CLONE=UI-R-DB0-byy-h-03-0-UI /FEA=EST /CNT=8 /TID=Rn.13770.1 /TIER=Stack /STK=7 /UG=Rn.13770 /UG_TITLE=ESTs, Weakly similar to A25483 env polyprotein, retrovirus-related - mouse (M.musculus) BI285335 1389415_at BI289649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289649 /DB_XREF=gi:14947432 /DB_XREF=UI-R-DK0-cfi-e-02-0-UI.s1 /CLONE=UI-R-DK0-cfi-e-02-0-UI /FEA=EST /CNT=8 /TID=Rn.38954.1 /TIER=Stack /STK=7 /UG=Rn.38954 /UG_TITLE=ESTs, Weakly similar to F43B10.2.p (Caenorhabditis elegans) (C.elegans) BI289649 round spermatid basic protein 1 Rsbn1 310749 NM_001191710 /// XM_001065582 /// XM_227540 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1389416_at BI296051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296051 /DB_XREF=gi:14960106 /DB_XREF=UI-R-DK0-cfd-g-07-0-UI.s1 /CLONE=UI-R-DK0-cfd-g-07-0-UI /FEA=EST /CNT=8 /TID=Rn.9373.1 /TIER=Stack /STK=7 /UG=Rn.9373 /UG_TITLE=ESTs BI296051 RGD1560398 RGD1560398 498192 XM_001080358 /// XM_579793 1389417_at AA946518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946518 /DB_XREF=gi:4132830 /DB_XREF=EST202017 /CLONE=ROVAZ66 /FEA=EST /CNT=8 /TID=Rn.11774.1 /TIER=Stack /STK=7 /UG=Rn.11774 /UG_TITLE=ESTs AA946518 retinoblastoma binding protein 5 Rbbp5 304794 NM_001107174 0043627 // response to estrogen stimulus // not recorded /// 0051568 // histone H3-K4 methylation // not recorded 0005634 // nucleus // not recorded /// 0035097 // histone methyltransferase complex // not recorded /// 0071339 // MLL1 complex // not recorded 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0042800 // histone methyltransferase activity (H3-K4 specific) // not recorded 1389418_at AI410452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410452 /DB_XREF=gi:4253956 /DB_XREF=EST238745 /CLONE=RHECS16 /FEA=EST /CNT=8 /TID=Rn.16020.1 /TIER=Stack /STK=7 /UG=Rn.16020 /UG_TITLE=ESTs AI410452 1389419_at BI296079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296079 /DB_XREF=gi:14960162 /DB_XREF=UI-R-DK0-cew-b-01-0-UI.s1 /CLONE=UI-R-DK0-cew-b-01-0-UI /FEA=EST /CNT=8 /TID=Rn.23543.1 /TIER=Stack /STK=7 /UG=Rn.23543 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) BI296079 1389420_at BI279446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279446 /DB_XREF=gi:14927260 /DB_XREF=UI-R-DA0-byl-e-06-0-UI.s1 /CLONE=UI-R-DA0-byl-e-06-0-UI /FEA=EST /CNT=8 /TID=Rn.19078.1 /TIER=Stack /STK=7 /UG=Rn.19078 /UG_TITLE=ESTs BI279446 signal transducing adaptor family member 2 Stap2 363334 NM_001025026 0005886 // plasma membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389421_at BE101140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101140 /DB_XREF=gi:8493049 /DB_XREF=UI-R-BJ1-auh-e-10-0-UI.s1 /CLONE=UI-R-BJ1-auh-e-10-0-UI /FEA=EST /CNT=8 /TID=Rn.40977.1 /TIER=Stack /STK=7 /UG=Rn.40977 /UG_TITLE=ESTs, Highly similar to DPOE_MOUSE DNA polymerase epsilon, catalytic subunit A (DNA polymerase II subunit A) (M.musculus) BE101140 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006260 // DNA replication // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1389422_at AI180400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180400 /DB_XREF=gi:3731038 /DB_XREF=EST224145 /CLONE=RSPCX21 /FEA=EST /CNT=8 /TID=Rn.19857.1 /TIER=Stack /STK=7 /UG=Rn.19857 /UG_TITLE=ESTs AI180400 1389423_at AI575451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575451 /DB_XREF=gi:4559827 /DB_XREF=UI-R-Y0-vg-e-11-0-UI.s1 /CLONE=UI-R-Y0-vg-e-11-0-UI /FEA=EST /CNT=8 /TID=Rn.37893.1 /TIER=Stack /STK=7 /UG=Rn.37893 /UG_TITLE=ESTs AI575451 Discoidin domain receptor tyrosine kinase 2 Ddr2 685781 NM_031764 0001558 // regulation of cell growth // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005518 // collagen binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1389424_at BI289475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289475 /DB_XREF=gi:14947084 /DB_XREF=UI-R-DK0-cfh-e-04-0-UI.s1 /CLONE=UI-R-DK0-cfh-e-04-0-UI /FEA=EST /CNT=8 /TID=Rn.15197.1 /TIER=Stack /STK=7 /UG=Rn.15197 /UG_TITLE=ESTs BI289475 hypothetical protein LOC688452 LOC688452 688452 NM_001135720 1389425_at AI408674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408674 /DB_XREF=gi:4252178 /DB_XREF=EST236965 /CLONE=ROVER16 /FEA=EST /CNT=8 /TID=Rn.12084.1 /TIER=Stack /STK=7 /UG=Rn.12084 /UG_TITLE=ESTs AI408674 5',3'-nucleotidase, cytosolic /// similar to 5(3)-deoxyribonucleotidase, cytosolic type (Cytosolic 5,3-pyrimidine nucleotidase) (Deoxy-5-nucleotidase 1) (dNT-1) LOC100360582 /// LOC688261 100360582 /// 688261 XM_001081691 /// XR_085973 1389426_at AW528806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528806 /DB_XREF=gi:7171220 /DB_XREF=UI-R-BT1-aki-g-10-0-UI.s1 /CLONE=UI-R-BT1-aki-g-10-0-UI /FEA=EST /CNT=8 /TID=Rn.32270.1 /TIER=Stack /STK=7 /UG=Rn.32270 /UG_TITLE=ESTs AW528806 coiled-coil domain containing 92 Ccdc92 100036765 NM_001083898 1389427_at BM386487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386487 /DB_XREF=gi:18186540 /DB_XREF=UI-R-CN1-cjg-i-17-0-UI.s1 /CLONE=UI-R-CN1-cjg-i-17-0-UI /FEA=EST /CNT=8 /TID=Rn.13467.1 /TIER=Stack /STK=7 /UG=Rn.13467 /UG_TITLE=ESTs BM386487 1389428_at AI104431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104431 /DB_XREF=gi:3708786 /DB_XREF=EST213720 /CLONE=RHECD28 /FEA=EST /CNT=8 /TID=Rn.15031.1 /TIER=Stack /STK=7 /UG=Rn.15031 /UG_TITLE=ESTs AI104431 1389429_at AA925367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925367 /DB_XREF=gi:4236558 /DB_XREF=UI-R-A1-ee-d-01-0-UI.s1 /CLONE=UI-R-A1-ee-d-01-0-UI /FEA=EST /CNT=8 /TID=Rn.15508.1 /TIER=Stack /STK=7 /UG=Rn.15508 /UG_TITLE=ESTs AA925367 1389430_at AI176172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176172 /DB_XREF=gi:3726810 /DB_XREF=EST219753 /CLONE=ROVBL79 /FEA=EST /CNT=8 /TID=Rn.7039.1 /TIER=Stack /STK=7 /UG=Rn.7039 /UG_TITLE=ESTs AI176172 1389431_at BF400782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400782 /DB_XREF=gi:11388757 /DB_XREF=UI-R-CA0-bhf-e-08-0-UI.s1 /CLONE=UI-R-CA0-bhf-e-08-0-UI /FEA=EST /CNT=8 /TID=Rn.24110.1 /TIER=Stack /STK=7 /UG=Rn.24110 /UG_TITLE=ESTs, Moderately similar to JC6306 protein kinase (M.musculus) BF400782 0006303 // double-strand break repair via nonhomologous end joining // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004677 // DNA-dependent protein kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1389432_at BE101096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101096 /DB_XREF=gi:8493003 /DB_XREF=UI-R-BJ1-auh-a-12-0-UI.s1 /CLONE=UI-R-BJ1-auh-a-12-0-UI /FEA=EST /CNT=8 /TID=Rn.901.1 /TIER=Stack /STK=7 /UG=Rn.901 /UG_TITLE=ESTs BE101096 pre-B-cell leukemia homeobox 2 Pbx2 406164 NM_001002828 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1389433_at BI298816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298816 /DB_XREF=gi:14975096 /DB_XREF=UI-R-CV2-chv-a-03-0-UI.s1 /CLONE=UI-R-CV2-chv-a-03-0-UI /FEA=EST /CNT=8 /TID=Rn.8726.1 /TIER=Stack /STK=7 /UG=Rn.8726 /UG_TITLE=ESTs BI298816 McKusick-Kaufman syndrome Mkks 311456 NM_001008353 0007286 // spermatid development // inferred from electronic annotation /// 0007286 // spermatid development // not recorded /// 0007608 // sensory perception of smell // inferred from electronic annotation /// 0007608 // sensory perception of smell // not recorded /// 0009296 // flagellum assembly // inferred from electronic annotation /// 0009296 // flagellum assembly // not recorded /// 0021756 // striatum development // inferred from electronic annotation /// 0021756 // striatum development // not recorded /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0021987 // cerebral cortex development // not recorded /// 0035058 // sensory cilium assembly // inferred from electronic annotation /// 0035058 // sensory cilium assembly // not recorded /// 0035176 // social behavior // inferred from electronic annotation /// 0035176 // social behavior // not recorded /// 0042384 // cilium assembly // not recorded /// 0044267 // cellular protein metabolic process // inferred from electronic annotation /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045444 // fat cell differentiation // not recorded /// 0045494 // photoreceptor cell maintenance // inferred from electronic annotation /// 0045494 // photoreceptor cell maintenance // not recorded /// 0048854 // brain morphogenesis // inferred from electronic annotation /// 0048854 // brain morphogenesis // not recorded /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // inferred from electronic annotation /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // not recorded /// 0060271 // cilium morphogenesis // inferred from electronic annotation /// 0060271 // cilium morphogenesis // not recorded /// 0060296 // regulation of cilium beat frequency involved in ciliary motility // inferred from electronic annotation /// 0060296 // regulation of cilium beat frequency involved in ciliary motility // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0031514 // motile secondary cilium // inferred from electronic annotation /// 0031514 // motile secondary cilium // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1389434_at BE110675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110675 /DB_XREF=gi:8502780 /DB_XREF=UI-R-BJ1-avu-f-12-0-UI.s1 /CLONE=UI-R-BJ1-avu-f-12-0-UI /FEA=EST /CNT=8 /TID=Rn.14581.1 /TIER=Stack /STK=7 /UG=Rn.14581 /UG_TITLE=ESTs BE110675 Bardet-Biedl syndrome 9 Bbs9 315484 XM_001074631 /// XM_235942 0045444 // fat cell differentiation // not recorded 0034464 // BBSome // not recorded 1389435_at BE329046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329046 /DB_XREF=gi:9202822 /DB_XREF=hq36a12.x1 /CLONE=IMAGE:3121438 /FEA=EST /CNT=8 /TID=Rn.25342.1 /TIER=Stack /STK=7 /UG=Rn.25342 /UG_TITLE=ESTs BE329046 Family with sequence similarity 114, member A1 Fam114a1 498366 XM_001078310 /// XM_573600 1389436_at AI236615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236615 /DB_XREF=gi:4136219 /DB_XREF=EST233177 /CLONE=ROVDI37 /FEA=EST /CNT=8 /TID=Rn.25565.1 /TIER=Stack /STK=7 /UG=Rn.25565 /UG_TITLE=ESTs AI236615 zinc finger, MYND-type containing 17 Zmynd17 289904 NM_001106025 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389437_at BF392952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392952 /DB_XREF=gi:11377812 /DB_XREF=UI-R-CA0-bfr-b-06-0-UI.s1 /CLONE=UI-R-CA0-bfr-b-06-0-UI /FEA=EST /CNT=8 /TID=Rn.38075.1 /TIER=Stack /STK=7 /UG=Rn.38075 /UG_TITLE=ESTs BF392952 sal-like 2 (Drosophila) Sall2 305854 NM_001107262 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0016581 // NuRD complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded 1389438_at BE118454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118454 /DB_XREF=gi:8510559 /DB_XREF=UI-R-BJ1-azp-g-09-0-UI.s1 /CLONE=UI-R-BJ1-azp-g-09-0-UI /FEA=EST /CNT=8 /TID=Rn.6325.1 /TIER=Stack /STK=7 /UG=Rn.6325 /UG_TITLE=ESTs BE118454 similar to testes development-related NYD-SP22 isoform 1 RGD1561916 500441 XM_001068622 /// XM_575803 0043623 // cellular protein complex assembly // not recorded 0005737 // cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0043014 // alpha-tubulin binding // not recorded 1389439_at AI172618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172618 /DB_XREF=gi:3712658 /DB_XREF=UI-R-C2p-oh-h-03-0-UI.s1 /CLONE=UI-R-C2p-oh-h-03-0-UI /FEA=EST /CNT=8 /TID=Rn.19650.1 /TIER=Stack /STK=7 /UG=Rn.19650 /UG_TITLE=ESTs AI172618 1389440_at AI178476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178476 /DB_XREF=gi:3729114 /DB_XREF=EST222150 /CLONE=RPLCR53 /FEA=EST /CNT=8 /TID=Rn.16546.1 /TIER=Stack /STK=7 /UG=Rn.16546 /UG_TITLE=ESTs AI178476 1389441_at BF416508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416508 /DB_XREF=gi:11404497 /DB_XREF=UI-R-CA0-bkk-e-02-0-UI.s1 /CLONE=UI-R-CA0-bkk-e-02-0-UI /FEA=EST /CNT=8 /TID=Rn.42048.1 /TIER=Stack /STK=7 /UG=Rn.42048 /UG_TITLE=ESTs, Weakly similar to helicase (Caenorhabditis elegans) (C.elegans) BF416508 annexin V-binding protein ABP-10 Abp10 207118 XM_001060944 0005515 // protein binding // inferred from physical interaction 1389442_at AI406804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406804 /DB_XREF=gi:4250308 /DB_XREF=EST235091 /CLONE=RBRDI42 /FEA=EST /CNT=8 /TID=Rn.21790.1 /TIER=Stack /STK=7 /UG=Rn.21790 /UG_TITLE=ESTs AI406804 1389443_at AI236463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236463 /DB_XREF=gi:3829969 /DB_XREF=EST233025 /CLONE=ROVDG42 /FEA=EST /CNT=8 /TID=Rn.24473.1 /TIER=Stack /STK=7 /UG=Rn.24473 /UG_TITLE=ESTs AI236463 activating signal cointegrator 1 complex subunit 2 Ascc2 498402 NM_001109091 1389444_at AI179665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179665 /DB_XREF=gi:3730303 /DB_XREF=EST223390 /CLONE=RSPCK21 /FEA=EST /CNT=8 /TID=Rn.22849.1 /TIER=Stack /STK=7 /UG=Rn.22849 /UG_TITLE=ESTs AI179665 Zinc finger, DHHC-type containing 20 Zdhhc20 305923 NM_001039336 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389445_at AI406571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406571 /DB_XREF=gi:4250075 /DB_XREF=EST234857 /CLONE=RKIDY92 /FEA=EST /CNT=8 /TID=Rn.29826.1 /TIER=Stack /STK=7 /UG=Rn.29826 /UG_TITLE=ESTs, Weakly similar to ZF94_RAT ZINC FINGER PROTEIN 94 (ZFP-94) (ZINC FINGER PROTEIN Y1) (RLZF-Y) (R.norvegicus) AI406571 zinc finger protein 688 Znf688 293511 XM_001078412 /// XM_002725667 /// XM_002728811 /// XM_215090 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1389446_at AI576586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576586 /DB_XREF=gi:4560962 /DB_XREF=UI-R-Y0-vd-b-01-0-UI.s1 /CLONE=UI-R-Y0-vd-b-01-0-UI /FEA=EST /CNT=8 /TID=Rn.38265.1 /TIER=Stack /STK=7 /UG=Rn.38265 /UG_TITLE=ESTs, Highly similar to U2 small nuclear ribonucleoprotein polypeptide A (Mus musculus) (M.musculus) AI576586 1389447_at AA955470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955470 /DB_XREF=gi:4237824 /DB_XREF=UI-R-A1-ex-e-06-0-UI.s1 /CLONE=UI-R-A1-ex-e-06-0-UI /FEA=EST /CNT=8 /TID=Rn.8283.1 /TIER=Stack /STK=7 /UG=Rn.8283 /UG_TITLE=ESTs AA955470 prolyl 4-hydroxylase, transmembrane P4htm 301008 XM_001075237 /// XM_217285 0055114 // oxidation reduction // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation 1389448_at AA800004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800004 /DB_XREF=gi:2862959 /DB_XREF=EST189501 /CLONE=RHEAI19 /FEA=EST /CNT=8 /TID=Rn.6269.1 /TIER=Stack /STK=7 /UG=Rn.6269 /UG_TITLE=ESTs, Weakly similar to CDC10 (cell division cycle 10, S.cerevisiae, homolog) (Rattus norvegicus) (R.norvegicus) AA800004 septin 4 Sept4 287606 NM_001011893 0007049 // cell cycle // inferred from electronic annotation 0031105 // septin complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1389449_at AI171994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171994 /DB_XREF=gi:3712034 /DB_XREF=EST217988 /CLONE=RMUBT61 /FEA=EST /CNT=8 /TID=Rn.22380.1 /TIER=Stack /STK=7 /UG=Rn.22380 /UG_TITLE=ESTs AI171994 fat storage-inducing transmembrane protein 1 Fitm1 290223 NM_001106037 0010890 // positive regulation of sequestering of triglyceride // not recorded /// 0034389 // lipid particle organization // not recorded 0005789 // endoplasmic reticulum membrane // not recorded 1389450_at BF392737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392737 /DB_XREF=gi:11377594 /DB_XREF=UI-R-CA0-bfm-f-08-0-UI.s1 /CLONE=UI-R-CA0-bfm-f-08-0-UI /FEA=EST /CNT=8 /TID=Rn.19568.1 /TIER=Stack /STK=7 /UG=Rn.19568 /UG_TITLE=ESTs, Weakly similar to Methyltransferase (Caenorhabditis elegans) (C.elegans) BF392737 similar to Putative methyltransferase WBSCR22 (Williams-Beuren syndrome chromosome region 22 protein homolog) /// Williams Beuren syndrome chromosome region 22 LOC360830 /// Wbscr22 360830 /// 368084 NM_001135743 /// XM_341103 0008152 // metabolic process // inferred from electronic annotation 0008168 // methyltransferase activity // inferred from electronic annotation 1389451_at AI179502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179502 /DB_XREF=gi:3730140 /DB_XREF=EST223221 /CLONE=RSPCI26 /FEA=EST /CNT=8 /TID=Rn.29304.1 /TIER=Stack /STK=7 /UG=Rn.29304 /UG_TITLE=ESTs AI179502 G protein-coupled receptor 172B Gpr172b 362942 NM_001109670 0006810 // transport // inferred from electronic annotation /// 0032218 // riboflavin transport // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0032217 // riboflavin transporter activity // inferred from direct assay 1389452_at AW528458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528458 /DB_XREF=gi:7170872 /DB_XREF=UI-R-BO1-ajl-f-03-0-UI.s1 /CLONE=UI-R-BO1-ajl-f-03-0-UI /FEA=EST /CNT=8 /TID=Rn.17261.1 /TIER=Stack /STK=7 /UG=Rn.17261 /UG_TITLE=ESTs AW528458 zinc finger, DHHC-type containing 8 Zdhhc8 303796 NM_001039021 0007610 // behavior // inferred from electronic annotation /// 0007610 // behavior // not recorded 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389453_at AA818364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818364 /DB_XREF=gi:4198190 /DB_XREF=UI-R-A0-ad-h-01-0-UI.s1 /CLONE=UI-R-A0-ad-h-01-0-UI /FEA=EST /CNT=8 /TID=Rn.22736.1 /TIER=Stack /STK=7 /UG=Rn.22736 /UG_TITLE=ESTs AA818364 RAD52 motif 1 Rdm1 287726 NM_001105842 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1389454_at BF408447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408447 /DB_XREF=gi:11396422 /DB_XREF=UI-R-BJ2-brc-h-02-0-UI.s1 /CLONE=UI-R-BJ2-brc-h-02-0-UI /FEA=EST /CNT=8 /TID=Rn.9535.1 /TIER=Stack /STK=7 /UG=Rn.9535 /UG_TITLE=ESTs, Highly similar to TF19 MOUSE TFAR19 PROTEIN (M.musculus) BF408447 programmed cell death 5 Pdcd5 292814 NM_001106247 0003677 // DNA binding // inferred from electronic annotation 1389455_at BG380421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380421 /DB_XREF=gi:13304893 /DB_XREF=UI-R-CT0-btx-a-11-0-UI.s1 /CLONE=UI-R-CT0-btx-a-11-0-UI /FEA=EST /CNT=11 /TID=Rn.23889.1 /TIER=Stack /STK=7 /UG=Rn.23889 /UG_TITLE=ESTs, Moderately similar to S24B_HUMAN Protein transport protein Sec24B (SEC24-related protein B) (H.sapiens) BG380421 SEC24 family, member B (S. cerevisiae) Sec24b 295461 NM_001106474 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded 0030127 // COPII vesicle coat // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1389456_at BI296591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296591 /DB_XREF=gi:14961168 /DB_XREF=UI-R-CV2-cgt-a-07-0-UI.s1 /CLONE=UI-R-CV2-cgt-a-07-0-UI /FEA=EST /CNT=9 /TID=Rn.17276.1 /TIER=Stack /STK=7 /UG=Rn.17276 /UG_TITLE=ESTs BI296591 1389457_at BF281184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281184 /DB_XREF=gi:11212338 /DB_XREF=EST445859 /CLONE=RGIAC37 /FEA=EST /CNT=9 /TID=Rn.20824.1 /TIER=Stack /STK=7 /UG=Rn.20824 /UG_TITLE=ESTs, Moderately similar to MYBB MOUSE MYB-RELATED PROTEIN B (M.musculus) BF281184 myeloblastosis oncogene-like 2 Mybl2 296344 NM_001106536 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation 1389458_at AW435191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435191 /DB_XREF=gi:6966498 /DB_XREF=UI-R-BJ0p-afj-e-12-0-UI.s1 /CLONE=UI-R-BJ0p-afj-e-12-0-UI /FEA=EST /CNT=9 /TID=Rn.41043.1 /TIER=Stack /STK=7 /UG=Rn.41043 /UG_TITLE=ESTs AW435191 1389459_at BE116947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116947 /DB_XREF=gi:8509017 /DB_XREF=UI-R-BS1-azg-f-09-0-UI.s1 /CLONE=UI-R-BS1-azg-f-09-0-UI /FEA=EST /CNT=9 /TID=Rn.8045.1 /TIER=Stack /STK=7 /UG=Rn.8045 /UG_TITLE=ESTs BE116947 similar to RIKEN cDNA 1600012F09 RGD1306613 306994 NM_001107356 1389460_at AI231787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231787 /DB_XREF=gi:3815667 /DB_XREF=EST228475 /CLONE=RHECO27 /FEA=EST /CNT=8 /TID=Rn.16928.1 /TIER=Stack /STK=7 /UG=Rn.16928 /UG_TITLE=ESTs AI231787 1389461_at BE113651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113651 /DB_XREF=gi:8505756 /DB_XREF=UI-R-BJ1-awg-g-04-0-UI.s1 /CLONE=UI-R-BJ1-awg-g-04-0-UI /FEA=EST /CNT=8 /TID=Rn.49839.1 /TIER=Stack /STK=7 /UG=Rn.49839 /UG_TITLE=ESTs BE113651 1389462_at BG373049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373049 /DB_XREF=gi:13269586 /DB_XREF=UI-R-CV1-bsb-h-09-0-UI.s1 /CLONE=UI-R-CV1-bsb-h-09-0-UI /FEA=EST /CNT=8 /TID=Rn.41650.1 /TIER=Stack /STK=7 /UG=Rn.41650 /UG_TITLE=ESTs BG373049 1389463_at BG375376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375376 /DB_XREF=gi:13299848 /DB_XREF=UI-R-CV1-bsz-f-08-0-UI.s1 /CLONE=UI-R-CV1-bsz-f-08-0-UI /FEA=EST /CNT=8 /TID=Rn.14623.1 /TIER=Stack /STK=7 /UG=Rn.14623 /UG_TITLE=ESTs BG375376 protein kinase, cAMP dependent regulatory, type I, beta Prkar1b 25521 NM_001033679 0001932 // regulation of protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007611 // learning or memory // inferred from electronic annotation /// 0007611 // learning or memory // not recorded /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0034199 // activation of protein kinase A activity // not recorded /// 0045859 // regulation of protein kinase activity // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005952 // cAMP-dependent protein kinase complex // inferred from direct assay /// 0005952 // cAMP-dependent protein kinase complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from direct assay /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0030552 // cAMP binding // inferred from direct assay /// 0034236 // protein kinase A catalytic subunit binding // inferred by curator 1389464_at BE120953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120953 /DB_XREF=gi:8513058 /DB_XREF=UI-R-CA0-baf-d-07-0-UI.s1 /CLONE=UI-R-CA0-baf-d-07-0-UI /FEA=EST /CNT=8 /TID=Rn.25032.1 /TIER=Stack /STK=7 /UG=Rn.25032 /UG_TITLE=ESTs, Weakly similar to T46612 multi PDZ domain protein 1 - rat (R.norvegicus) BE120953 ligand of numb-protein X 1 Lnx1 360926 NM_001108358 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded /// 0051260 // protein homooligomerization // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // not recorded /// 0030165 // PDZ domain binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389465_at AI231286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231286 /DB_XREF=gi:3815166 /DB_XREF=EST227974 /CLONE=REMDI17 /FEA=EST /CNT=8 /TID=Rn.20167.1 /TIER=Stack /STK=7 /UG=Rn.20167 /UG_TITLE=ESTs AI231286 1389466_at BG374280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374280 /DB_XREF=gi:13298752 /DB_XREF=UI-R-CV1-bsn-e-07-0-UI.s1 /CLONE=UI-R-CV1-bsn-e-07-0-UI /FEA=EST /CNT=8 /TID=Rn.25036.1 /TIER=Stack /STK=7 /UG=Rn.25036 /UG_TITLE=ESTs BG374280 Coiled-coil domain containing 6 Ccdc6 691155 XM_001077030 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded 1389467_at BM391248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391248 /DB_XREF=gi:18191301 /DB_XREF=UI-R-DY0-ckq-k-06-0-UI.s1 /CLONE=UI-R-DY0-ckq-k-06-0-UI /FEA=EST /CNT=8 /TID=Rn.4061.1 /TIER=Stack /STK=7 /UG=Rn.4061 /UG_TITLE=ESTs BM391248 transmembrane protein 100 Tmem100 497979 NM_001017479 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1389468_at BF393902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393902 /DB_XREF=gi:11378765 /DB_XREF=UI-R-CA0-bgw-d-04-0-UI.s1 /CLONE=UI-R-CA0-bgw-d-04-0-UI /FEA=EST /CNT=8 /TID=Rn.12446.1 /TIER=Stack /STK=7 /UG=Rn.12446 /UG_TITLE=ESTs BF393902 ribose 5-phosphate isomerase A Rpia 362383 NM_001108632 0006098 // pentose-phosphate shunt // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0009052 // pentose-phosphate shunt, non-oxidative branch // inferred from direct assay /// 0009052 // pentose-phosphate shunt, non-oxidative branch // inferred from electronic annotation /// 0019693 // ribose phosphate metabolic process // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // not recorded 0004751 // ribose-5-phosphate isomerase activity // inferred from direct assay /// 0004751 // ribose-5-phosphate isomerase activity // inferred from electronic annotation /// 0004751 // ribose-5-phosphate isomerase activity // not recorded /// 0005529 // sugar binding // inferred from direct assay /// 0016853 // isomerase activity // inferred from electronic annotation /// 0048029 // monosaccharide binding // inferred from direct assay 1389469_at AA858645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858645 /DB_XREF=gi:4228839 /DB_XREF=UI-R-A0-bf-c-08-0-UI.s1 /CLONE=UI-R-A0-bf-c-08-0-UI /FEA=EST /CNT=8 /TID=Rn.1478.1 /TIER=Stack /STK=7 /UG=Rn.1478 /UG_TITLE=ESTs AA858645 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1389470_at AI639117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639117 /DB_XREF=gi:4700151 /DB_XREF=rx02103s /CLONE=rx02103 /FEA=EST /CNT=8 /TID=Rn.15966.1 /TIER=Stack /STK=7 /UG=Rn.15966 /UG_TITLE=ESTs, Weakly similar to nerve growth factor, gamma polypeptide (Rattus norvegicus) (R.norvegicus) AI639117 complement factor B Cfb 294257 NM_212466 0006508 // proteolysis // inferred from electronic annotation /// 0006956 // complement activation // inferred from direct assay /// 0006956 // complement activation // inferred from electronic annotation /// 0006957 // complement activation, alternative pathway // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1389471_at AI412736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412736 /DB_XREF=gi:4256240 /DB_XREF=EST241035 /CLONE=RBRDT05 /FEA=EST /CNT=8 /TID=Rn.16749.1 /TIER=Stack /STK=7 /UG=Rn.16749 /UG_TITLE=ESTs AI412736 translocase of outer mitochondrial membrane 34 Tomm34 311621 NM_001044244 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // not recorded 1389472_at AI169015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169015 /DB_XREF=gi:3705323 /DB_XREF=EST214843 /CLONE=RKIBL87 /FEA=EST /CNT=8 /TID=Rn.18927.1 /TIER=Stack /STK=7 /UG=Rn.18927 /UG_TITLE=ESTs AI169015 methyltransferase like 13 Mettl13 289159 NM_001134501 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation 1389473_at BG374248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374248 /DB_XREF=gi:13298720 /DB_XREF=UI-R-CV1-bsn-b-03-0-UI.s1 /CLONE=UI-R-CV1-bsn-b-03-0-UI /FEA=EST /CNT=8 /TID=Rn.21866.1 /TIER=Stack /STK=7 /UG=Rn.21866 /UG_TITLE=ESTs, Moderately similar to RGR_MOUSE RPE-RETINAL G PROTEIN-COUPLED RECEPTOR (M.musculus) BG374248 retinal G protein coupled receptor Rgr 306307 NM_001107299 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007601 // visual perception // inferred from electronic annotation /// 0007602 // phototransduction // inferred from electronic annotation 0005887 // integral to plasma membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389474_at AA818380 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818380 /DB_XREF=gi:4228180 /DB_XREF=UI-R-A0-at-f-10-0-UI.s1 /CLONE=UI-R-A0-at-f-10-0-UI /FEA=EST /CNT=8 /TID=Rn.1844.1 /TIER=Stack /STK=7 /UG=Rn.1844 /UG_TITLE=ESTs AA818380 myosin regulatory light chain interacting protein Mylip 306825 NM_001107344 0006928 // cellular component movement // not recorded /// 0007399 // nervous system development // not recorded /// 0010989 // negative regulation of low-density lipoprotein particle clearance // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0031648 // protein destabilization // not recorded /// 0032803 // regulation of low-density lipoprotein receptor catabolic process // not recorded /// 0042632 // cholesterol homeostasis // not recorded /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0045732 // positive regulation of protein catabolic process // not recorded 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0019898 // extrinsic to membrane // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389475_at BF398112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398112 /DB_XREF=gi:11383098 /DB_XREF=UI-R-BS2-bem-e-08-0-UI.s1 /CLONE=UI-R-BS2-bem-e-08-0-UI /FEA=EST /CNT=8 /TID=Rn.18928.1 /TIER=Stack /STK=7 /UG=Rn.18928 /UG_TITLE=ESTs BF398112 smoothened homolog (Drosophila) Smo 25273 NM_012807 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001649 // osteoblast differentiation // inferred from expression pattern /// 0001649 // osteoblast differentiation // not recorded /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001708 // cell fate specification // inferred from electronic annotation /// 0001708 // cell fate specification // not recorded /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0002052 // positive regulation of neuroblast proliferation // inferred from electronic annotation /// 0002052 // positive regulation of neuroblast proliferation // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // not recorded /// 0007224 // smoothened signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // not recorded /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007417 // central nervous system development // not recorded /// 0007417 // central nervous system development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0009611 // response to wounding // inferred from expression pattern /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from expression pattern /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0021561 // facial nerve development // inferred from expression pattern /// 0021696 // cerebellar cortex morphogenesis // inferred from electronic annotation /// 0021696 // cerebellar cortex morphogenesis // not recorded /// 0021904 // dorsal/ventral neural tube patterning // inferred from electronic annotation /// 0021904 // dorsal/ventral neural tube patterning // not recorded /// 0021910 // smoothened signaling pathway involved in ventral spinal cord patterning // inferred from electronic annotation /// 0021910 // smoothened signaling pathway involved in ventral spinal cord patterning // not recorded /// 0021938 // smoothened signaling pathway involved in regulation of granule cell precursor cell proliferation // inferred from electronic annotation /// 0021938 // smoothened signaling pathway involved in regulation of granule cell precursor cell proliferation // not recorded /// 0021953 // central nervous system neuron differentiation // inferred from electronic annotation /// 0021953 // central nervous system neuron differentiation // not recorded /// 0031102 // neuron projection regeneration // inferred from expression pattern /// 0033687 // osteoblast proliferation // inferred from expression pattern /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded /// 0042307 // positive regulation of protein import into nucleus // inferred from electronic annotation /// 0042307 // positive regulation of protein import into nucleus // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043392 // negative regulation of DNA binding // inferred from electronic annotation /// 0043392 // negative regulation of DNA binding // not recorded /// 0045880 // positive regulation of smoothened signaling pathway // inferred from electronic annotation /// 0045880 // positive regulation of smoothened signaling pathway // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048468 // cell development // inferred from electronic annotation /// 0048468 // cell development // not recorded /// 0048589 // developmental growth // inferred from electronic annotation /// 0048589 // developmental growth // not recorded /// 0048846 // axon extension involved in axon guidance // inferred from mutant phenotype /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0050821 // protein stabilization // inferred from electronic annotation /// 0050821 // protein stabilization // not recorded /// 0060684 // epithelial-mesenchymal cell signaling // inferred from electronic annotation /// 0060684 // epithelial-mesenchymal cell signaling // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005929 // cilium // inferred from electronic annotation /// 0005929 // cilium // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1389476_at AI010238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010238 /DB_XREF=gi:4133203 /DB_XREF=EST204689 /CLONE=RLUBV65 /FEA=EST /CNT=7 /TID=Rn.8294.1 /TIER=Stack /STK=7 /UG=Rn.8294 /UG_TITLE=ESTs, Highly similar to T46376 hypothetical protein DKFZp434G1619.1 (H.sapiens) AI010238 similar to RIKEN cDNA D630029K19 RGD1307100 294978 NM_001037184 0007154 // cell communication // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389477_at BI278855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278855 /DB_XREF=gi:14926105 /DB_XREF=UI-R-CX0-bwx-g-01-0-UI.s1 /CLONE=UI-R-CX0-bwx-g-01-0-UI /FEA=EST /CNT=7 /TID=Rn.35620.1 /TIER=Stack /STK=7 /UG=Rn.35620 /UG_TITLE=ESTs BI278855 1389478_at BM392031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392031 /DB_XREF=gi:18192084 /DB_XREF=UI-R-DO1-cmk-m-16-0-UI.s1 /CLONE=UI-R-DO1-cmk-m-16-0-UI /FEA=EST /CNT=7 /TID=Rn.23143.1 /TIER=Stack /STK=7 /UG=Rn.23143 /UG_TITLE=ESTs BM392031 kelch-like 22 (Drosophila) Klhl22 303792 NM_001107079 0051301 // cell division // not recorded /// 0051301 // cell division // inferred from sequence or structural similarity 0031463 // Cul3-RING ubiquitin ligase complex // not recorded /// 0031463 // Cul3-RING ubiquitin ligase complex // inferred from sequence or structural similarity 0005515 // protein binding // inferred from electronic annotation 1389479_at AI233750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233750 /DB_XREF=gi:3817630 /DB_XREF=EST230438 /CLONE=RKIDJ60 /FEA=EST /CNT=7 /TID=Rn.12247.1 /TIER=Stack /STK=7 /UG=Rn.12247 /UG_TITLE=ESTs AI233750 Kruppel-like factor 3 (basic) Klf3 114845 NM_001105742 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1389480_at AI598462 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598462 /DB_XREF=gi:4607510 /DB_XREF=EST250165 /CLONE=REMDQ01 /FEA=EST /CNT=7 /TID=Rn.15503.1 /TIER=Stack /STK=7 /UG=Rn.15503 /UG_TITLE=ESTs AI598462 RWD domain containing 4A Rwdd4a 502084 NM_001034994 1389481_at BI282891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282891 /DB_XREF=gi:14934106 /DB_XREF=UI-R-CW0s-ccc-f-01-0-UI.s1 /CLONE=UI-R-CW0s-ccc-f-01-0-UI /FEA=EST /CNT=7 /TID=Rn.36383.1 /TIER=Stack /STK=7 /UG=Rn.36383 /UG_TITLE=ESTs BI282891 similar to GI:13385412-like protein splice form I RGD735065 294311 NM_199379 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1389482_at BI279701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279701 /DB_XREF=gi:14927765 /DB_XREF=UI-R-DE0-caf-f-10-0-UI.s1 /CLONE=UI-R-DE0-caf-f-10-0-UI /FEA=EST /CNT=7 /TID=Rn.7008.1 /TIER=Stack /STK=7 /UG=Rn.7008 /UG_TITLE=ESTs BI279701 lysine-rich coiled-coil 1 Krcc1 312437 NM_001009413 1389483_at AI408686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408686 /DB_XREF=gi:4252190 /DB_XREF=EST236977 /CLONE=ROVER85 /FEA=EST /CNT=7 /TID=Rn.33740.1 /TIER=Stack /STK=7 /UG=Rn.33740 /UG_TITLE=ESTs AI408686 dpy-19-like 1 (C. elegans) Dpy19l1 315496 NM_001191791 /// XM_001053132 /// XM_235970 0016021 // integral to membrane // inferred from electronic annotation 1389484_at BI274693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274693 /DB_XREF=gi:14885848 /DB_XREF=UI-R-CX0-bws-h-04-0-UI.s1 /CLONE=UI-R-CX0-bws-h-04-0-UI /FEA=EST /CNT=7 /TID=Rn.6275.1 /TIER=Stack /STK=7 /UG=Rn.6275 /UG_TITLE=ESTs, Weakly similar to T03F1.2.p (Caenorhabditis elegans) (C.elegans) BI274693 coenzyme Q4 homolog (S. cerevisiae) Coq4 366013 NM_001031662 0006744 // ubiquinone biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1389485_at BE099784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099784 /DB_XREF=gi:8491664 /DB_XREF=UI-R-BJ1-atq-b-12-0-UI.s1 /CLONE=UI-R-BJ1-atq-b-12-0-UI /FEA=EST /CNT=7 /TID=Rn.15576.1 /TIER=Stack /STK=7 /UG=Rn.15576 /UG_TITLE=ESTs, Moderately similar to A31794 mdm-1 nuclear protein (M.musculus) BE099784 Mdm1 nuclear protein homolog (mouse) Mdm1 314859 NM_001017459 0005634 // nucleus // inferred from electronic annotation 1389486_at BE108354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108354 /DB_XREF=gi:8500459 /DB_XREF=UI-R-BS1-ayv-c-10-0-UI.s1 /CLONE=UI-R-BS1-ayv-c-10-0-UI /FEA=EST /CNT=7 /TID=Rn.22499.1 /TIER=Stack /STK=7 /UG=Rn.22499 /UG_TITLE=ESTs BE108354 1389487_at AA818949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818949 /DB_XREF=gi:4227618 /DB_XREF=UI-R-A0-as-e-02-0-UI.s1 /CLONE=UI-R-A0-as-e-02-0-UI /FEA=EST /CNT=7 /TID=Rn.20419.1 /TIER=Stack /STK=7 /UG=Rn.20419 /UG_TITLE=ESTs, Weakly similar to T18661 hypothetical protein B0035.14 - Caenorhabditis elegans (C.elegans) AA818949 DnaJ (Hsp40) homolog, subfamily B, member 12 Dnajb12 294513 NM_001013907 0006457 // protein folding // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1389488_at AA800750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800750 /DB_XREF=gi:2863705 /DB_XREF=EST190247 /CLONE=RLUAL03 /FEA=EST /CNT=7 /TID=Rn.25125.1 /TIER=Stack /STK=7 /UG=Rn.25125 /UG_TITLE=ESTs, Moderately similar to POL3 MOUSE RETROVIRUS-RELATED POL POLYPROTEIN (M.musculus) AA800750 1389489_at BE109900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109900 /DB_XREF=gi:8502005 /DB_XREF=UI-R-CA0-axi-f-10-0-UI.s1 /CLONE=UI-R-CA0-axi-f-10-0-UI /FEA=EST /CNT=7 /TID=Rn.15520.1 /TIER=Stack /STK=7 /UG=Rn.15520 /UG_TITLE=ESTs BE109900 1389490_at BI274335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274335 /DB_XREF=gi:14885171 /DB_XREF=UI-R-CW0-bwh-f-11-0-UI.s1 /CLONE=UI-R-CW0-bwh-f-11-0-UI /FEA=EST /CNT=7 /TID=Rn.50693.1 /TIER=Stack /STK=7 /UG=Rn.50693 /UG_TITLE=ESTs BI274335 CD248 molecule, endosialin Cd248 293669 NM_001106325 0005737 // cytoplasm // not recorded 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1389491_at BE102814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102814 /DB_XREF=gi:8494913 /DB_XREF=UI-R-BT1-aqt-e-11-0-UI.s1 /CLONE=UI-R-BT1-aqt-e-11-0-UI /FEA=EST /CNT=7 /TID=Rn.22391.1 /TIER=Stack /STK=7 /UG=Rn.22391 /UG_TITLE=ESTs BE102814 1389492_at AA818820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818820 /DB_XREF=gi:4227494 /DB_XREF=UI-R-A0-ar-d-08-0-UI.s1 /CLONE=UI-R-A0-ar-d-08-0-UI /FEA=EST /CNT=7 /TID=Rn.23360.1 /TIER=Stack /STK=7 /UG=Rn.23360 /UG_TITLE=ESTs AA818820 1389493_at AI411278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411278 /DB_XREF=gi:4254782 /DB_XREF=EST239572 /CLONE=RKIEO45 /FEA=EST /CNT=7 /TID=Rn.40721.1 /TIER=Stack /STK=7 /UG=Rn.40721 /UG_TITLE=ESTs, Highly similar to JC7326 bood POZ containing protein (H.sapiens) AI411278 ankyrin repeat and BTB (POZ) domain containing 1 Abtb1 297432 NM_001005902 0006412 // translation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1389494_at BM388595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388595 /DB_XREF=gi:18188648 /DB_XREF=UI-R-DZ0-ckm-b-05-0-UI.s1 /CLONE=UI-R-DZ0-ckm-b-05-0-UI /FEA=EST /CNT=7 /TID=Rn.22455.1 /TIER=Stack /STK=7 /UG=Rn.22455 /UG_TITLE=ESTs BM388595 coiled-coil domain containing 88B Ccdc88b 361715 NM_001108517 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1389495_at BF394211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394211 /DB_XREF=gi:11379075 /DB_XREF=UI-R-CA0-bhc-a-01-0-UI.s1 /CLONE=UI-R-CA0-bhc-a-01-0-UI /FEA=EST /CNT=7 /TID=Rn.63615.1 /TIER=Stack /STK=7 /UG=Rn.63615 /UG_TITLE=ESTs BF394211 1389496_at BI300893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300893 /DB_XREF=gi:14977173 /DB_XREF=UI-R-CV2-cil-b-12-0-UI.s1 /CLONE=UI-R-CV2-cil-b-12-0-UI /FEA=EST /CNT=7 /TID=Rn.53944.1 /TIER=Stack /STK=7 /UG=Rn.53944 /UG_TITLE=ESTs BI300893 A kinase (PRKA) anchor protein 7 Akap7 361458 NM_001001801 0008104 // protein localization // traceable author statement /// 0010738 // regulation of protein kinase A signaling cascade // inferred from mutant phenotype /// 0016070 // RNA metabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016328 // lateral plasma membrane // not recorded /// 0016529 // sarcoplasmic reticulum // inferred from direct assay /// 0030315 // T-tubule // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070382 // exocytic vesicle // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016208 // AMP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0032947 // protein complex scaffold // inferred from mutant phenotype /// 0034237 // protein kinase A regulatory subunit binding // inferred from direct assay /// 0051018 // protein kinase A binding // not recorded /// 0051018 // protein kinase A binding // traceable author statement /// 0051018 // protein kinase A binding // inferred from electronic annotation 1389497_at BF414808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414808 /DB_XREF=gi:11402797 /DB_XREF=UI-R-BJ2-bos-c-09-0-UI.s1 /CLONE=UI-R-BJ2-bos-c-09-0-UI /FEA=EST /CNT=7 /TID=Rn.3127.1 /TIER=Stack /STK=7 /UG=Rn.3127 /UG_TITLE=ESTs BF414808 SET and MYND domain containing 5 Smyd5 312503 NM_001107870 1389498_at BE111203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111203 /DB_XREF=gi:8503308 /DB_XREF=UI-R-BJ1-auv-g-07-0-UI.s1 /CLONE=UI-R-BJ1-auv-g-07-0-UI /FEA=EST /CNT=7 /TID=Rn.20699.1 /TIER=Stack /STK=7 /UG=Rn.20699 /UG_TITLE=ESTs BE111203 trypsin domain containing 1 Tysnd1 365571 NM_001108932 0006508 // proteolysis // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation 1389499_at AW254246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254246 /DB_XREF=gi:6597837 /DB_XREF=UI-R-BJ0-aev-d-04-0-UI.s1 /CLONE=UI-R-BJ0-aev-d-04-0-UI /FEA=EST /CNT=7 /TID=Rn.40836.1 /TIER=Stack /STK=7 /UG=Rn.40836 /UG_TITLE=ESTs AW254246 1389500_at BM383122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383122 /DB_XREF=gi:18183175 /DB_XREF=UI-R-DS0-cje-d-06-0-UI.s1 /CLONE=UI-R-DS0-cje-d-06-0-UI /FEA=EST /CNT=7 /TID=Rn.6859.1 /TIER=Stack /STK=7 /UG=Rn.6859 /UG_TITLE=ESTs BM383122 1389501_at BG371889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371889 /DB_XREF=gi:13268426 /DB_XREF=UI-R-CV0-brj-e-10-0-UI.s1 /CLONE=UI-R-CV0-brj-e-10-0-UI /FEA=EST /CNT=7 /TID=Rn.26565.1 /TIER=Stack /STK=7 /UG=Rn.26565 /UG_TITLE=ESTs BG371889 similar to Retinal rod rhodopsin-sensitive cGMP 3,5-cyclic phosphodiesterase gamma-subunit (GMP-PDE gamma) LOC688297 688297 XM_001081804 /// XM_001081805 0007601 // visual perception // inferred from electronic annotation 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0030553 // cGMP binding // inferred from electronic annotation 1389502_at BG378715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378715 /DB_XREF=gi:13303187 /DB_XREF=UI-R-CV1-bvs-a-04-0-UI.s1 /CLONE=UI-R-CV1-bvs-a-04-0-UI /FEA=EST /CNT=7 /TID=Rn.43174.1 /TIER=Stack /STK=7 /UG=Rn.43174 /UG_TITLE=ESTs BG378715 1389503_at BI285447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285447 /DB_XREF=gi:14939094 /DB_XREF=UI-R-DD0-caa-c-01-0-UI.s1 /CLONE=UI-R-DD0-caa-c-01-0-UI /FEA=EST /CNT=7 /TID=Rn.9193.1 /TIER=Stack /STK=7 /UG=Rn.9193 /UG_TITLE=ESTs BI285447 similar to uroplakin 3B isoform b /// similar to uroplakin 3B isoform b LOC367994 /// LOC680969 367994 /// 680969 NM_001109020 /// XM_001059718 1389504_at BI297929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297929 /DB_XREF=gi:14974209 /DB_XREF=UI-R-CV2-chd-c-11-0-UI.s1 /CLONE=UI-R-CV2-chd-c-11-0-UI /FEA=EST /CNT=7 /TID=Rn.50909.1 /TIER=Stack /STK=7 /UG=Rn.50909 /UG_TITLE=ESTs, Weakly similar to S47857 basic protein, cytosolic - fruit fly (D.melanogaster) BI297929 Deltex homolog 3 (Drosophila) Dtx3 500847 NM_001191989 /// XM_001055773 /// XM_576239 0007219 // Notch signaling pathway // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1389505_at BI290283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290283 /DB_XREF=gi:14948710 /DB_XREF=UI-R-DK0-cfu-d-09-0-UI.s1 /CLONE=UI-R-DK0-cfu-d-09-0-UI /FEA=EST /CNT=7 /TID=Rn.19019.2 /TIER=Stack /STK=7 /UG=Rn.19019 /UG_TITLE=Rattus norvegicus tandem pore potassium channel mRNA, complete cds BI290283 1389506_x_at BI298458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298458 /DB_XREF=gi:14974738 /DB_XREF=UI-R-CV2-chi-e-10-0-UI.s1 /CLONE=UI-R-CV2-chi-e-10-0-UI /FEA=EST /CNT=7 /TID=Rn.9262.2 /TIER=Stack /STK=7 /UG=Rn.9262 /LL=64515 /UG_GENE=Cdc20 /UG_TITLE=cell cycle protein p55CDC BI298458 Cell division cycle 20 homolog (S. cerevisiae) Cdc20 64515 NM_171993 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0050773 // regulation of dendrite development // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0005654 // nucleoplasm // not recorded /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0019899 // enzyme binding // not recorded 1389507_at AI072446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072446 /DB_XREF=gi:3398640 /DB_XREF=UI-R-C2-nk-e-04-0-UI.s1 /CLONE=UI-R-C2-nk-e-04-0-UI /FEA=EST /CNT=7 /TID=Rn.18904.1 /TIER=Stack /STK=7 /UG=Rn.18904 /UG_TITLE=ESTs, Moderately similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) AI072446 neural precursor cell expressed, developmentally down-regulated 4-like Nedd4l 291553 NM_001008300 0006464 // protein modification process // inferred from electronic annotation /// 0010038 // response to metal ion // not recorded /// 0010766 // negative regulation of sodium ion transport // not recorded /// 0010766 // negative regulation of sodium ion transport // inferred from electronic annotation /// 0010766 // negative regulation of sodium ion transport // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0017080 // sodium channel regulator activity // not recorded /// 0019871 // sodium channel inhibitor activity // not recorded /// 0019871 // sodium channel inhibitor activity // inferred from electronic annotation 1389508_at BI298075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298075 /DB_XREF=gi:14974355 /DB_XREF=UI-R-CV2-chf-b-02-0-UI.s1 /CLONE=UI-R-CV2-chf-b-02-0-UI /FEA=EST /CNT=7 /TID=Rn.66918.1 /TIER=Stack /STK=7 /UG=Rn.66918 /UG_TITLE=ESTs BI298075 1389509_at BE097016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097016 /DB_XREF=gi:8487947 /DB_XREF=UI-R-BO1-apw-a-02-0-UI.s1 /CLONE=UI-R-BO1-apw-a-02-0-UI /FEA=EST /CNT=7 /TID=Rn.46066.1 /TIER=Stack /STK=7 /UG=Rn.46066 /UG_TITLE=ESTs BE097016 Sin3A associated protein Sap130 307527 XM_001059195 /// XM_226078 0043966 // histone H3 acetylation // not recorded 0030914 // STAGA complex // not recorded 0003713 // transcription coactivator activity // not recorded /// 0004402 // histone acetyltransferase activity // not recorded 1389510_at BE111765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111765 /DB_XREF=gi:8503870 /DB_XREF=UI-R-BJ1-avx-e-10-0-UI.s1 /CLONE=UI-R-BJ1-avx-e-10-0-UI /FEA=EST /CNT=7 /TID=Rn.33249.1 /TIER=Stack /STK=7 /UG=Rn.33249 /UG_TITLE=ESTs, Moderately similar to CELL GROWTH REGULATING NUCLEOLAR PROTEIN (M.musculus) BE111765 Ly1 antibody reactive homolog (mouse) Lyar 289707 NM_001011911 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1389511_s_at BF403383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403383 /DB_XREF=gi:11391398 /DB_XREF=UI-R-CA1-biy-h-15-0-UI.s1 /CLONE=UI-R-CA1-biy-h-15-0-UI /FEA=EST /CNT=7 /TID=Rn.15631.1 /TIER=Stack /STK=7 /UG=Rn.15631 /UG_TITLE=ESTs BF403383 1389512_at BF410571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410571 /DB_XREF=gi:11398546 /DB_XREF=UI-R-CA0-bma-c-10-0-UI.s1 /CLONE=UI-R-CA0-bma-c-10-0-UI /FEA=EST /CNT=7 /TID=Rn.51497.1 /TIER=Stack /STK=7 /UG=Rn.51497 /UG_TITLE=ESTs BF410571 1389513_at AI501128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501128 /DB_XREF=gi:4398979 /DB_XREF=UI-R-C2p-rs-b-12-0-UI.s1 /CLONE=UI-R-C2p-rs-b-12-0-UI /FEA=EST /CNT=7 /TID=Rn.20170.1 /TIER=Stack /STK=7 /UG=Rn.20170 /UG_TITLE=ESTs AI501128 1389514_at AI711152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711152 /DB_XREF=gi:5000928 /DB_XREF=UI-R-AD1-zo-g-06-0-UI.s1 /CLONE=UI-R-AD1-zo-g-06-0-UI /FEA=EST /CNT=7 /TID=Rn.20269.1 /TIER=Stack /STK=7 /UG=Rn.20269 /UG_TITLE=ESTs AI711152 leucine rich repeat and Ig domain containing 1 Lingo1 315691 NM_001100722 0021954 // central nervous system neuron development // inferred from electronic annotation /// 0021954 // central nervous system neuron development // not recorded /// 0031175 // neuron projection development // inferred from electronic annotation /// 0031175 // neuron projection development // not recorded /// 0043491 // protein kinase B signaling cascade // inferred from electronic annotation /// 0043491 // protein kinase B signaling cascade // not recorded /// 0048715 // negative regulation of oligodendrocyte differentiation // inferred from electronic annotation /// 0048715 // negative regulation of oligodendrocyte differentiation // not recorded 0005154 // epidermal growth factor receptor binding // inferred from electronic annotation /// 0005154 // epidermal growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389515_at AW251269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251269 /DB_XREF=gi:6594860 /DB_XREF=UI-R-BJ0-adg-c-01-0-UI.s1 /CLONE=UI-R-BJ0-adg-c-01-0-UI /FEA=EST /CNT=7 /TID=Rn.3320.2 /TIER=Stack /STK=7 /UG=Rn.3320 /UG_TITLE=ESTs, Weakly similar to V-1 protein (Rattus norvegicus) (R.norvegicus) AW251269 regulatory factor X-associated ankyrin-containing protein Rfxank 306353 NM_001013136 0007265 // Ras protein signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded 1389516_at BI300082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300082 /DB_XREF=gi:14976362 /DB_XREF=UI-R-CV2-cig-f-05-0-UI.s1 /CLONE=UI-R-CV2-cig-f-05-0-UI /FEA=EST /CNT=7 /TID=Rn.79830.1 /TIER=Stack /STK=7 /UG=Rn.79830 /UG_TITLE=ESTs, Weakly similar to POL2 MOUSE RETROVIRUS-RELATED POL POLYPROTEIN (M.musculus) BI300082 1389517_at BF404046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404046 /DB_XREF=gi:11392021 /DB_XREF=UI-R-CA1-bjd-m-18-0-UI.s1 /CLONE=UI-R-CA1-bjd-m-18-0-UI /FEA=EST /CNT=7 /TID=Rn.60831.1 /TIER=Stack /STK=7 /UG=Rn.60831 /UG_TITLE=ESTs, Weakly similar to VESOMERAL SECRETORY PROTEIN II PRECURSOR (M.musculus) BF404046 hypothetical protein LOC681186 LOC681186 681186 XM_001060674 0005488 // binding // inferred from electronic annotation 1389518_at AI009763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009763 /DB_XREF=gi:3223595 /DB_XREF=EST204214 /CLONE=RLUBO19 /FEA=EST /CNT=31 /TID=Rn.7385.1 /TIER=Stack /STK=6 /UG=Rn.7385 /UG_TITLE=ESTs AI009763 Translocase of outer mitochondrial membrane 5 homolog (yeast) Tomm5 680080 XM_001055588 0005739 // mitochondrion // not recorded /// 0005742 // mitochondrial outer membrane translocase complex // not recorded 1389519_at BI275955 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275955 /DB_XREF=gi:14920390 /DB_XREF=UI-R-CX0-bxi-d-10-0-UI.s1 /CLONE=UI-R-CX0-bxi-d-10-0-UI /FEA=EST /CNT=37 /TID=Rn.40420.1 /TIER=Stack /STK=6 /UG=Rn.40420 /UG_TITLE=ESTs, Highly similar to PSD8_HUMAN 26S PROTEASOME REGULATORY SUBUNIT S14 (H.sapiens) BI275955 proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 Psmd8 292766 NM_001100831 0006508 // proteolysis // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005838 // proteasome regulatory particle // inferred from electronic annotation 0005515 // protein binding // not recorded 1389520_at BI285874 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285874 /DB_XREF=gi:14939957 /DB_XREF=UI-R-CX0s-ccv-h-04-0-UI.s1 /CLONE=UI-R-CX0s-ccv-h-04-0-UI /FEA=EST /CNT=24 /TID=Rn.3168.1 /TIER=Stack /STK=6 /UG=Rn.3168 /UG_TITLE=ESTs, Highly similar to WDR1_MOUSE WD-REPEAT PROTEIN 1 (ACTIN INTERACTING PROTEIN 1) (M.musculus) BI285874 WD repeat domain 1 Wdr1 360950 NM_001014135 0005576 // extracellular region // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389521_at AI408553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408553 /DB_XREF=gi:4252057 /DB_XREF=EST236843 /CLONE=ROVEQ57 /FEA=EST /CNT=32 /TID=Rn.36174.1 /TIER=Stack /STK=6 /UG=Rn.36174 /UG_TITLE=ESTs, Weakly similar to MIPP MOUSE MIPP PROTEIN (M.musculus) AI408553 influenza virus NS1A binding protein Ivns1abp 289089 NM_001047085 0005515 // protein binding // inferred from electronic annotation 1389522_at BE109446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109446 /DB_XREF=gi:8501591 /DB_XREF=UI-R-BJ1-aut-f-12-0-UI.s1 /CLONE=UI-R-BJ1-aut-f-12-0-UI /FEA=EST /CNT=22 /TID=Rn.12651.1 /TIER=Stack /STK=6 /UG=Rn.12651 /UG_TITLE=ESTs BE109446 Pleckstrin homology domain containing, family A member 6 Plekha6 360842 XM_001060716 /// XM_341118 0005515 // protein binding // inferred from electronic annotation 1389523_at BM386127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386127 /DB_XREF=gi:18186180 /DB_XREF=UI-R-CN1-cjf-c-19-0-UI.s1 /CLONE=UI-R-CN1-cjf-c-19-0-UI /FEA=EST /CNT=19 /TID=Rn.8462.1 /TIER=Stack /STK=6 /UG=Rn.8462 /UG_TITLE=ESTs BM386127 zinc finger protein 598 Znf598 287119 NM_001105770 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389524_at AA997881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997881 /DB_XREF=gi:4285982 /DB_XREF=UI-R-C0-hu-g-10-0-UI.s1 /CLONE=UI-R-C0-hu-g-10-0-UI /FEA=EST /CNT=20 /TID=Rn.4014.1 /TIER=Stack /STK=6 /UG=Rn.4014 /UG_TITLE=ESTs AA997881 YTH domain family, member 3 Ythdf3 361920 NM_001108546 1389525_at AI171788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171788 /DB_XREF=gi:4134664 /DB_XREF=EST217770 /CLONE=RMUBQ71 /FEA=EST /CNT=18 /TID=Rn.8015.1 /TIER=Stack /STK=6 /UG=Rn.8015 /UG_TITLE=ESTs AI171788 ring finger protein 149 Rnf149 363222 XM_001058362 /// XM_343561 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389526_at BG373853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373853 /DB_XREF=gi:13298325 /DB_XREF=UI-R-CV1-bsk-f-05-0-UI.s1 /CLONE=UI-R-CV1-bsk-f-05-0-UI /FEA=EST /CNT=27 /TID=Rn.26059.1 /TIER=Stack /STK=7 /UG=Rn.26059 /UG_TITLE=ESTs BG373853 EFR3 homolog A (S. cerevisiae) Efr3a 362923 NM_001130564 0005622 // intracellular // not recorded /// 0005886 // plasma membrane // not recorded 0005488 // binding // inferred from electronic annotation 1389527_at BM384073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384073 /DB_XREF=gi:18184126 /DB_XREF=UI-R-DZ0-cks-k-24-0-UI.s1 /CLONE=UI-R-DZ0-cks-k-24-0-UI /FEA=EST /CNT=15 /TID=Rn.7304.1 /TIER=Stack /STK=6 /UG=Rn.7304 /UG_TITLE=ESTs BM384073 promethin LOC378467 378467 NM_194354 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1389528_s_at BI288619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288619 /DB_XREF=gi:14945383 /DB_XREF=UI-R-DK0-cdd-a-04-0-UI.s1 /CLONE=UI-R-DK0-cdd-a-04-0-UI /FEA=EST /CNT=25 /TID=Rn.7672.1 /TIER=Stack /STK=6 /UG=Rn.7672 /UG_TITLE=ESTs BI288619 Jun oncogene Jun 24516 NM_021835 0001525 // angiogenesis // inferred from mutant phenotype /// 0001836 // release of cytochrome c from mitochondria // inferred from mutant phenotype /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007184 // SMAD protein nuclear translocation // inferred from electronic annotation /// 0007184 // SMAD protein nuclear translocation // not recorded /// 0007568 // aging // inferred from expression pattern /// 0007612 // learning // inferred from mutant phenotype /// 0007623 // circadian rhythm // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009987 // cellular process // inferred from electronic annotation /// 0009987 // cellular process // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0031953 // negative regulation of protein autophosphorylation // inferred from electronic annotation /// 0031953 // negative regulation of protein autophosphorylation // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0035026 // leading edge cell differentiation // inferred from electronic annotation /// 0035026 // leading edge cell differentiation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043392 // negative regulation of DNA binding // inferred from electronic annotation /// 0043392 // negative regulation of DNA binding // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0043923 // positive regulation by host of viral transcription // inferred from electronic annotation /// 0043923 // positive regulation by host of viral transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045657 // positive regulation of monocyte differentiation // inferred from direct assay /// 0045740 // positive regulation of DNA replication // inferred from mutant phenotype /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from direct assay /// 0051365 // cellular response to potassium ion starvation // inferred from mutant phenotype /// 0051591 // response to cAMP // inferred from expression pattern /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded /// 0051899 // membrane depolarization // inferred from direct assay /// 0060395 // SMAD protein signal transduction // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // not recorded 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from mutant phenotype /// 0005667 // transcription factor complex // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from mutant phenotype /// 0003702 // RNA polymerase II transcription factor activity // traceable author statement /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0005100 // Rho GTPase activator activity // inferred from electronic annotation /// 0005100 // Rho GTPase activator activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // traceable author statement /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // traceable author statement /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred by curator /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046982 // protein heterodimerization activity // traceable author statement /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0070412 // R-SMAD binding // inferred from electronic annotation /// 0070412 // R-SMAD binding // not recorded 1389529_at AI409595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409595 /DB_XREF=gi:4253099 /DB_XREF=EST237887 /CLONE=RKIDW64 /FEA=EST /CNT=17 /TID=Rn.8303.1 /TIER=Stack /STK=6 /UG=Rn.8303 /UG_TITLE=ESTs AI409595 Family with sequence similarity 168, member A Fam168a 361614 NM_001108494 1389530_at BI274313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274313 /DB_XREF=gi:14885125 /DB_XREF=UI-R-CW0-bwh-d-12-0-UI.s1 /CLONE=UI-R-CW0-bwh-d-12-0-UI /FEA=EST /CNT=14 /TID=Rn.7521.1 /TIER=Stack /STK=6 /UG=Rn.7521 /UG_TITLE=ESTs BI274313 solute carrier family 35, member E1 Slc35e1 498599 NM_001109107 0006810 // transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1389531_at AW523471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523471 /DB_XREF=gi:7165856 /DB_XREF=UI-R-BO0-aho-e-10-0-UI.s1 /CLONE=UI-R-BO0-aho-e-10-0-UI /FEA=EST /CNT=14 /TID=Rn.12057.1 /TIER=Stack /STK=6 /UG=Rn.12057 /UG_TITLE=ESTs AW523471 zinc finger protein 330 Zfp330 361387 NM_001108443 0000775 // chromosome, centromeric region // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0030496 // midbody // not recorded 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1389532_at AW252250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252250 /DB_XREF=gi:6595881 /DB_XREF=UI-R-BJ0-adt-e-11-0-UI.s1 /CLONE=UI-R-BJ0-adt-e-11-0-UI /FEA=EST /CNT=22 /TID=Rn.7963.1 /TIER=Stack /STK=6 /UG=Rn.7963 /UG_TITLE=ESTs, Weakly similar to NEBL_HUMAN NEBULETTE (ACTIN-BINDING Z-DISK PROTEIN) (H.sapiens) AW252250 Nebulette Nebl 307189 XM_001068639 /// XM_225644 1389533_at AA944398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944398 /DB_XREF=gi:3104314 /DB_XREF=EST199897 /CLONE=REMAG58 /FEA=EST /CNT=16 /TID=Rn.7350.1 /TIER=Stack /STK=6 /UG=Rn.7350 /UG_TITLE=ESTs, Highly similar to FIBULIN-2 PRECURSOR (M.musculus) AA944398 fibulin 2 Fbln2 282583 XM_001062865 /// XM_001073286 0010811 // positive regulation of cell-substrate adhesion // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0050840 // extracellular matrix binding // inferred from electronic annotation /// 0050840 // extracellular matrix binding // not recorded 1389534_at BF282336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282336 /DB_XREF=gi:11213507 /DB_XREF=EST447028 /CLONE=RGIDN36 /FEA=EST /CNT=13 /TID=Rn.2784.1 /TIER=Stack /STK=6 /UG=Rn.2784 /UG_TITLE=ESTs, Highly similar to UB6B MOUSE UBIQUITIN-CONJUGATING ENZYME E2-23 KDA (M.musculus) BF282336 ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast) Ube2e3 295686 NM_001047857 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070534 // protein K63-linked ubiquitination // not recorded /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0070979 // protein K11-linked ubiquitination // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1389535_at BI285645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285645 /DB_XREF=gi:14939500 /DB_XREF=UI-R-DD0-bzv-e-02-0-UI.s1 /CLONE=UI-R-DD0-bzv-e-02-0-UI /FEA=EST /CNT=13 /TID=Rn.1566.1 /TIER=Stack /STK=6 /UG=Rn.1566 /UG_TITLE=ESTs, Moderately similar to death associated protein 3; mitochondrial ribosomal protein S29; ionizing radiation resistance conferring protein; mitochondrial 28S ribosomal protein S29 (Homo sapiens) (H.sapiens) BI285645 death associated protein 3 Dap3 295238 NM_001011950 0006915 // apoptosis // inferred from electronic annotation /// 0008637 // apoptotic mitochondrial changes // inferred from electronic annotation /// 0008637 // apoptotic mitochondrial changes // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005761 // mitochondrial ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389536_at BF281954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281954 /DB_XREF=gi:11213024 /DB_XREF=EST446545 /CLONE=RGIDA03 /FEA=EST /CNT=13 /TID=Rn.12812.1 /TIER=Stack /STK=6 /UG=Rn.12812 /UG_TITLE=ESTs BF281954 HUS1 checkpoint homolog (S. pombe) Hus1 498411 NM_001109092 0000077 // DNA damage checkpoint // not recorded /// 0000724 // double-strand break repair via homologous recombination // not recorded /// 0006260 // DNA replication // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0008156 // negative regulation of DNA replication // not recorded /// 0009411 // response to UV // not recorded /// 0009790 // embryo development // not recorded /// 0031575 // mitotic cell cycle G1/S transition checkpoint // not recorded 0005634 // nucleus // not recorded 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // not recorded 1389537_at AI502399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502399 /DB_XREF=gi:4400250 /DB_XREF=UI-R-C0-jj-g-05-0-UI.s1 /CLONE=UI-R-C0-jj-g-05-0-UI /FEA=EST /CNT=19 /TID=Rn.7232.1 /TIER=Stack /STK=6 /UG=Rn.7232 /UG_TITLE=ESTs, Moderately similar to treacle (Mus musculus) (M.musculus) AI502399 Treacher Collins-Franceschetti syndrome 1 homolog (human) Tcof1 291571 NM_001106143 0042790 // transcription of nuclear rRNA large RNA polymerase I transcript // not recorded 0005730 // nucleolus // not recorded 0005515 // protein binding // not recorded 1389538_at AW672589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW672589 /DB_XREF=gi:7541138 /DB_XREF=32A /FEA=EST /CNT=15 /TID=Rn.12550.1 /TIER=Stack /STK=6 /UG=Rn.12550 /UG_TITLE=ESTs, Highly similar to IKBA_RAT NF-kappaB inhibitor alpha (I-kappa-B-alpha) (IkappaBalpha) (IKB-alpha) (RLIF-1) (R.norvegicus) AW672589 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha Nfkbia 25493 NM_001105720 0000060 // protein import into nucleus, translocation // inferred from electronic annotation /// 0000060 // protein import into nucleus, translocation // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0007253 // cytoplasmic sequestering of NF-kappaB // inferred from mutant phenotype /// 0007253 // cytoplasmic sequestering of NF-kappaB // not recorded /// 0007253 // cytoplasmic sequestering of NF-kappaB // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010745 // negative regulation of macrophage derived foam cell differentiation // inferred from electronic annotation /// 0010745 // negative regulation of macrophage derived foam cell differentiation // not recorded /// 0010875 // positive regulation of cholesterol efflux // inferred from electronic annotation /// 0010875 // positive regulation of cholesterol efflux // not recorded /// 0010888 // negative regulation of lipid storage // inferred from electronic annotation /// 0010888 // negative regulation of lipid storage // not recorded /// 0031663 // lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0031663 // lipopolysaccharide-mediated signaling pathway // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0032270 // positive regulation of cellular protein metabolic process // inferred from electronic annotation /// 0032270 // positive regulation of cellular protein metabolic process // not recorded /// 0032495 // response to muramyl dipeptide // inferred from electronic annotation /// 0032495 // response to muramyl dipeptide // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0034142 // toll-like receptor 4 signaling pathway // inferred from electronic annotation /// 0034142 // toll-like receptor 4 signaling pathway // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042994 // cytoplasmic sequestering of transcription factor // not recorded /// 0042994 // cytoplasmic sequestering of transcription factor // inferred from electronic annotation /// 0043330 // response to exogenous dsRNA // inferred from electronic annotation /// 0043330 // response to exogenous dsRNA // not recorded /// 0045638 // negative regulation of myeloid cell differentiation // inferred from electronic annotation /// 0045638 // negative regulation of myeloid cell differentiation // not recorded /// 0045746 // negative regulation of Notch signaling pathway // inferred from electronic annotation /// 0045746 // negative regulation of Notch signaling pathway // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0070427 // nucleotide-binding oligomerization domain containing 1 signaling pathway // inferred from electronic annotation /// 0070427 // nucleotide-binding oligomerization domain containing 1 signaling pathway // not recorded /// 0070431 // nucleotide-binding oligomerization domain containing 2 signaling pathway // inferred from electronic annotation /// 0070431 // nucleotide-binding oligomerization domain containing 2 signaling pathway // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0033256 // I-kappaB/NF-kappaB complex // inferred by curator /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008139 // nuclear localization sequence binding // inferred from electronic annotation /// 0008139 // nuclear localization sequence binding // not recorded /// 0031072 // heat shock protein binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0051059 // NF-kappaB binding // inferred by curator /// 0051059 // NF-kappaB binding // inferred from physical interaction /// 0051059 // NF-kappaB binding // not recorded /// 0051059 // NF-kappaB binding // inferred from electronic annotation 1389539_at BG378248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378248 /DB_XREF=gi:13302720 /DB_XREF=UI-R-CV1-bvp-g-10-0-UI.s1 /CLONE=UI-R-CV1-bvp-g-10-0-UI /FEA=EST /CNT=13 /TID=Rn.1917.1 /TIER=Stack /STK=6 /UG=Rn.1917 /UG_TITLE=ESTs, Weakly similar to SKIP_HUMAN NUCLEAR PROTEIN SKIP (H.sapiens) BG378248 Similar to DIP13 alpha RGD1309388 290537 XM_002725153 /// XM_002728373 1389540_at AI236141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236141 /DB_XREF=gi:3829647 /DB_XREF=EST232703 /CLONE=ROVDB91 /FEA=EST /CNT=13 /TID=Rn.19826.2 /TIER=Stack /STK=6 /UG=Rn.19826 /UG_TITLE=ESTs AI236141 similar to IQ motif and Sec7 domain 1 LOC686590 686590 XM_001073009 0032012 // regulation of ARF protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005086 // ARF guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1389541_at AI410836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410836 /DB_XREF=gi:4254340 /DB_XREF=EST239129 /CLONE=RHECZ92 /FEA=EST /CNT=12 /TID=Rn.30148.1 /TIER=Stack /STK=6 /UG=Rn.30148 /UG_TITLE=ESTs AI410836 1389542_at BE108837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108837 /DB_XREF=gi:8500942 /DB_XREF=UI-R-BS1-ayz-a-02-0-UI.s1 /CLONE=UI-R-BS1-ayz-a-02-0-UI /FEA=EST /CNT=12 /TID=Rn.44998.1 /TIER=Stack /STK=6 /UG=Rn.44998 /UG_TITLE=ESTs, Weakly similar to S28261 centromere protein E (H.sapiens) BE108837 centromere protein E Cenpe 362044 XM_001077739 /// XM_342345 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007088 // regulation of mitosis // not recorded /// 0007094 // mitotic cell cycle spindle assembly checkpoint // not recorded /// 0008608 // attachment of spindle microtubules to kinetochore // not recorded /// 0045184 // establishment of protein localization // not recorded /// 0045842 // positive regulation of mitotic metaphase/anaphase transition // not recorded /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0050793 // regulation of developmental process // not recorded /// 0051984 // positive regulation of chromosome segregation // not recorded /// 0051987 // positive regulation of attachment of spindle microtubules to kinetochore // not recorded 0000775 // chromosome, centromeric region // not recorded /// 0000776 // kinetochore // not recorded /// 0000779 // condensed chromosome, centromeric region // not recorded /// 0005634 // nucleus // not recorded /// 0005874 // microtubule // not recorded 0003777 // microtubule motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0043515 // kinetochore binding // not recorded 1389543_at BE111083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111083 /DB_XREF=gi:8503188 /DB_XREF=UI-R-BJ1-auz-d-10-0-UI.s1 /CLONE=UI-R-BJ1-auz-d-10-0-UI /FEA=EST /CNT=12 /TID=Rn.49256.1 /TIER=Stack /STK=6 /UG=Rn.49256 /UG_TITLE=ESTs, Highly similar to CRAR MOUSE COMPLEMENT-ACTIVATING COMPONENT OF RA-REACTIVE FACTOR PRECURSOR (M.musculus) BE111083 mannan-binding lectin serine peptidase 1 Masp1 64023 NM_022257 0001867 // complement activation, lectin pathway // not recorded /// 0001867 // complement activation, lectin pathway // inferred from sequence or structural similarity /// 0001867 // complement activation, lectin pathway // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006956 // complement activation // non-traceable author statement /// 0008152 // metabolic process // not recorded /// 0045087 // innate immune response // inferred from electronic annotation /// 0045916 // negative regulation of complement activation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from direct assay /// 0004252 // serine-type endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from physical interaction /// 0048306 // calcium-dependent protein binding // not recorded 1389544_at BG669998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669998 /DB_XREF=gi:13892097 /DB_XREF=DRNAANE06 /CLONE=DRNAANE06 /FEA=EST /CNT=12 /TID=Rn.17109.1 /TIER=Stack /STK=6 /UG=Rn.17109 /UG_TITLE=ESTs, Highly similar to OM07_HUMAN PROBABLE MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM7 HOMOLOG (TRANSLOCASE OF OUTER MEMBRANE 7 KDA SUBUNIT HOMOLOG) (PROTEIN AD-014) (H.sapiens) BG669998 translocase of outer mitochondrial membrane 7 homolog (yeast) Tomm7 685620 NM_001135174 0006886 // intracellular protein transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005742 // mitochondrial outer membrane translocase complex // not recorded 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from electronic annotation 1389545_at BF281994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281994 /DB_XREF=gi:11213064 /DB_XREF=EST446585 /CLONE=RGIDA50 /FEA=EST /CNT=15 /TID=Rn.17825.1 /TIER=Stack /STK=6 /UG=Rn.17825 /UG_TITLE=ESTs BF281994 transducin (beta)-like 1 X-linked receptor 1 Tbl1xr1 365755 NM_001108941 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005876 // spindle microtubule // not recorded /// 0017053 // transcriptional repressor complex // not recorded 0003677 // DNA binding // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008013 // beta-catenin binding // not recorded /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0042393 // histone binding // not recorded /// 0047485 // protein N-terminus binding // not recorded 1389546_at BF418582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418582 /DB_XREF=gi:11406571 /DB_XREF=UI-R-BJ2-bqh-f-03-0-UI.s1 /CLONE=UI-R-BJ2-bqh-f-03-0-UI /FEA=EST /CNT=14 /TID=Rn.25101.1 /TIER=Stack /STK=6 /UG=Rn.25101 /UG_TITLE=ESTs BF418582 angiomotin like 2 Amotl2 65157 NM_031717 0005923 // tight junction // inferred from electronic annotation /// 0005923 // tight junction // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1389547_at BE107375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107375 /DB_XREF=gi:8499480 /DB_XREF=UI-R-BS1-ayt-a-04-0-UI.s1 /CLONE=UI-R-BS1-ayt-a-04-0-UI /FEA=EST /CNT=12 /TID=Rn.8935.1 /TIER=Stack /STK=6 /UG=Rn.8935 /UG_TITLE=ESTs BE107375 periphilin 1 Pphln1 366975 NM_001108992 1389548_at BF288683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288683 /DB_XREF=gi:11219857 /DB_XREF=EST453378 /CLONE=RGIGX68 /FEA=EST /CNT=12 /TID=Rn.17173.1 /TIER=Stack /STK=6 /UG=Rn.17173 /UG_TITLE=ESTs, Weakly similar to Iron-containing alcohol dehydrogenases (Caenorhabditis elegans) (C.elegans) BF288683 alcohol dehydrogenase, iron containing, 1 Adhfe1 362474 NM_001025423 0015993 // molecular hydrogen transport // not recorded /// 0015993 // molecular hydrogen transport // inferred from sequence or structural similarity /// 0015993 // molecular hydrogen transport // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047988 // hydroxyacid-oxoacid transhydrogenase activity // not recorded /// 0047988 // hydroxyacid-oxoacid transhydrogenase activity // inferred from sequence or structural similarity /// 0047988 // hydroxyacid-oxoacid transhydrogenase activity // inferred from electronic annotation 1389549_at AI172262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172262 /DB_XREF=gi:3712302 /DB_XREF=EST218262 /CLONE=RMUBX05 /FEA=EST /CNT=12 /TID=Rn.1880.1 /TIER=Stack /STK=6 /UG=Rn.1880 /UG_TITLE=ESTs AI172262 1389550_at BM385941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385941 /DB_XREF=gi:18185994 /DB_XREF=UI-R-DN1-ckf-o-13-0-UI.s1 /CLONE=UI-R-DN1-ckf-o-13-0-UI /FEA=EST /CNT=11 /TID=Rn.9513.1 /TIER=Stack /STK=6 /UG=Rn.9513 /UG_TITLE=ESTs BM385941 1389551_at AI008160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008160 /DB_XREF=gi:3221992 /DB_XREF=EST202611 /CLONE=REMAT70 /FEA=EST /CNT=11 /TID=Rn.1263.1 /TIER=Stack /STK=6 /UG=Rn.1263 /UG_TITLE=ESTs, Moderately similar to T44603 hypothetical protein CGI-83 (H.sapiens) AI008160 lactamase, beta 2 Lactb2 297768 NM_001024247 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389552_at BG371715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371715 /DB_XREF=gi:13268252 /DB_XREF=UI-R-CV0-brh-d-03-0-UI.s1 /CLONE=UI-R-CV0-brh-d-03-0-UI /FEA=EST /CNT=11 /TID=Rn.3909.1 /TIER=Stack /STK=6 /UG=Rn.3909 /UG_TITLE=ESTs BG371715 GRIP and coiled-coil domain containing 2 Gcc2 309798 NM_001107633 0006622 // protein targeting to lysosome // not recorded /// 0006622 // protein targeting to lysosome // inferred from sequence or structural similarity /// 0031023 // microtubule organizing center organization // inferred from sequence or structural similarity /// 0034067 // protein localization in Golgi apparatus // not recorded /// 0034067 // protein localization in Golgi apparatus // inferred from sequence or structural similarity /// 0034453 // microtubule anchoring // inferred from sequence or structural similarity /// 0034499 // late endosome to Golgi transport // not recorded /// 0034499 // late endosome to Golgi transport // inferred from sequence or structural similarity /// 0042147 // retrograde transport, endosome to Golgi // not recorded /// 0043001 // Golgi to plasma membrane protein transport // not recorded /// 0070861 // regulation of protein exit from endoplasmic reticulum // inferred from sequence or structural similarity /// 0090161 // Golgi ribbon formation // not recorded /// 0090161 // Golgi ribbon formation // inferred from sequence or structural similarity 0005794 // Golgi apparatus // not recorded /// 0005802 // trans-Golgi network // not recorded /// 0005802 // trans-Golgi network // inferred from sequence or structural similarity 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1389553_at BF393825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393825 /DB_XREF=gi:11378688 /DB_XREF=UI-R-CA0-bgv-d-06-0-UI.s1 /CLONE=UI-R-CA0-bgv-d-06-0-UI /FEA=EST /CNT=11 /TID=Rn.18460.1 /TIER=Stack /STK=6 /UG=Rn.18460 /UG_TITLE=ESTs, Weakly similar to KUCR RAT KUPFFER CELL RECEPTOR (R.norvegicus) BF393825 C-type lectin domain family 4, member a3 Clec4a3 362431 NM_001005891 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1389554_at AA956784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956784 /DB_XREF=gi:4239258 /DB_XREF=UI-R-E1-fr-g-08-0-UI.s1 /CLONE=UI-R-E1-fr-g-08-0-UI /FEA=EST /CNT=11 /TID=Rn.3836.1 /TIER=Stack /STK=6 /UG=Rn.3836 /UG_TITLE=ESTs AA956784 1389555_at BM387190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387190 /DB_XREF=gi:18187243 /DB_XREF=UI-R-CN1-cji-n-19-0-UI.s1 /CLONE=UI-R-CN1-cji-n-19-0-UI /FEA=EST /CNT=11 /TID=Rn.14867.1 /TIER=Stack /STK=6 /UG=Rn.14867 /UG_TITLE=ESTs, Moderately similar to B61188 SC1 protein - mouse (M.musculus) BM387190 transcription factor 19 Tcf19 406195 NM_213561 1389556_at BI286000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286000 /DB_XREF=gi:14940212 /DB_XREF=UI-R-CX0s-ccu-c-10-0-UI.s1 /CLONE=UI-R-CX0s-ccu-c-10-0-UI /FEA=EST /CNT=24 /TID=Rn.36855.1 /TIER=Stack /STK=6 /UG=Rn.36855 /UG_TITLE=ESTs, Highly similar to JC6161 kinesin-associated protein KAP3 splice form A - mouse (M.musculus) BI286000 kinesin-associated protein 3 Kifap3 289168 NM_001105964 0008104 // protein localization // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0046587 // positive regulation of calcium-dependent cell-cell adhesion // not recorded 0005871 // kinesin complex // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019894 // kinesin binding // inferred from electronic annotation 1389557_at BM384037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384037 /DB_XREF=gi:18184090 /DB_XREF=UI-R-DM1-ckb-k-10-0-UI.s1 /CLONE=UI-R-DM1-ckb-k-10-0-UI /FEA=EST /CNT=16 /TID=Rn.65525.1 /TIER=Stack /STK=6 /UG=Rn.65525 /UG_TITLE=ESTs, Highly similar to JC5386 steroidogenic acute regulatory protein - rat (R.norvegicus) BM384037 testis expressed 261 Tex261 297392 NM_001017537 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1389558_at BF281962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281962 /DB_XREF=gi:11213032 /DB_XREF=EST446553 /CLONE=RGIDA12 /FEA=EST /CNT=14 /TID=Rn.17799.1 /TIER=Stack /STK=6 /UG=Rn.17799 /UG_TITLE=ESTs BF281962 similar to CG3570-PA LOC500034 500034 NM_001109221 1389559_at AA892872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892872 /DB_XREF=gi:3019751 /DB_XREF=EST196675 /CLONE=RKIAY34 /FEA=EST /CNT=13 /TID=Rn.3891.1 /TIER=Stack /STK=6 /UG=Rn.3891 /UG_TITLE=ESTs, Highly similar to Y196_HUMAN HYPOTHETICAL PROTEIN KIAA0196 (H.sapiens) AA892872 similar to Hypothetical protein MGC31278 RGD1564420 362919 XM_002726932 /// XM_002729816 1389560_at BF284702 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284702 /DB_XREF=gi:11215772 /DB_XREF=EST449293 /CLONE=RGIEV15 /FEA=EST /CNT=12 /TID=Rn.16054.1 /TIER=Stack /STK=6 /UG=Rn.16054 /UG_TITLE=ESTs BF284702 1389561_at BE110624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110624 /DB_XREF=gi:8502729 /DB_XREF=UI-R-BJ1-avu-b-05-0-UI.s1 /CLONE=UI-R-BJ1-avu-b-05-0-UI /FEA=EST /CNT=12 /TID=Rn.2072.1 /TIER=Stack /STK=6 /UG=Rn.2072 /UG_TITLE=ESTs BE110624 transmembrane protein 218 Tmem218 300516 NM_001008325 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1389562_at BF396686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396686 /DB_XREF=gi:11381666 /DB_XREF=UI-R-BS2-bea-h-12-0-UI.s1 /CLONE=UI-R-BS2-bea-h-12-0-UI /FEA=EST /CNT=11 /TID=Rn.43242.1 /TIER=Stack /STK=6 /UG=Rn.43242 /UG_TITLE=ESTs BF396686 1389563_at BF406562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406562 /DB_XREF=gi:11394537 /DB_XREF=UI-R-BJ2-bpu-e-08-0-UI.s1 /CLONE=UI-R-BJ2-bpu-e-08-0-UI /FEA=EST /CNT=11 /TID=Rn.14706.1 /TIER=Stack /STK=6 /UG=Rn.14706 /UG_TITLE=ESTs BF406562 trafficking protein particle complex 10 Trappc10 309678 NM_001173528 /// XM_001079323 /// XM_228065 0005488 // binding // inferred from electronic annotation 1389564_at AA892159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892159 /DB_XREF=gi:3019038 /DB_XREF=EST195962 /CLONE=RKIAN08 /FEA=EST /CNT=10 /TID=Rn.43931.1 /TIER=Stack /STK=6 /UG=Rn.43931 /UG_TITLE=ESTs AA892159 1389565_at BE113491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113491 /DB_XREF=gi:8505596 /DB_XREF=UI-R-BJ1-awl-h-11-0-UI.s1 /CLONE=UI-R-BJ1-awl-h-11-0-UI /FEA=EST /CNT=10 /TID=Rn.22478.1 /TIER=Stack /STK=6 /UG=Rn.22478 /UG_TITLE=ESTs BE113491 1389566_at AW253821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253821 /DB_XREF=gi:6597412 /DB_XREF=UI-R-BJ0-acz-g-06-0-UI.s1 /CLONE=UI-R-BJ0-acz-g-06-0-UI /FEA=EST /CNT=10 /TID=Rn.23351.1 /TIER=Stack /STK=6 /UG=Rn.23351 /UG_TITLE=ESTs, Weakly similar to CGB1 RAT G2MITOTIC-SPECIFIC CYCLIN B1 (R.norvegicus) AW253821 cyclin B2 Ccnb2 363088 NM_001009470 0001701 // in utero embryonic development // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0040007 // growth // not recorded /// 0043029 // T cell homeostasis // not recorded /// 0048538 // thymus development // not recorded /// 0051301 // cell division // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0015630 // microtubule cytoskeleton // not recorded 0005515 // protein binding // not recorded 1389567_at BE329208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329208 /DB_XREF=gi:9202984 /DB_XREF=hq38c11.x1 /CLONE=IMAGE:3121652 /FEA=EST /CNT=10 /TID=Rn.1704.2 /TIER=Stack /STK=6 /UG=Rn.1704 /UG_TITLE=ESTs, Weakly similar to mitochondrial processing peptidase beta (Rattus norvegicus) (R.norvegicus) BE329208 SREBF chaperone Scap 301024 NM_001100966 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006994 // positive regulation of transcription via sterol regulatory element binding involved in ER-nuclear sterol response pathway // inferred from electronic annotation /// 0006994 // positive regulation of transcription via sterol regulatory element binding involved in ER-nuclear sterol response pathway // not recorded /// 0007568 // aging // inferred from expression pattern /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0019217 // regulation of fatty acid metabolic process // not recorded /// 0019217 // regulation of fatty acid metabolic process // inferred from electronic annotation /// 0032868 // response to insulin stimulus // inferred from electronic annotation /// 0032868 // response to insulin stimulus // not recorded /// 0042304 // regulation of fatty acid biosynthetic process // inferred from electronic annotation /// 0042304 // regulation of fatty acid biosynthetic process // not recorded /// 0045540 // regulation of cholesterol biosynthetic process // inferred from electronic annotation /// 0045540 // regulation of cholesterol biosynthetic process // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0012507 // ER to Golgi transport vesicle membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1389568_at BM391099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391099 /DB_XREF=gi:18191152 /DB_XREF=UI-R-CN1-cjr-h-14-0-UI.s1 /CLONE=UI-R-CN1-cjr-h-14-0-UI /FEA=EST /CNT=10 /TID=Rn.25356.1 /TIER=Stack /STK=6 /UG=Rn.25356 /UG_TITLE=ESTs BM391099 calcium homeostasis modulator 2 Calhm2 294019 NM_001008306 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1389569_at AW917092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917092 /DB_XREF=gi:8082834 /DB_XREF=EST348396 /CLONE=RGIDZ18 /FEA=EST /CNT=10 /TID=Rn.17880.1 /TIER=Stack /STK=6 /UG=Rn.17880 /UG_TITLE=ESTs, Weakly similar to S44853 K12H4.3 protein - Caenorhabditis elegans (C.elegans) AW917092 brix domain containing 2 Bxdc2 294799 NM_001029915 0006412 // translation // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1389570_at AA850657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850657 /DB_XREF=gi:2938197 /DB_XREF=EST193425 /CLONE=ROVAJ18 /FEA=EST /CNT=10 /TID=Rn.7440.1 /TIER=Stack /STK=6 /UG=Rn.7440 /UG_TITLE=ESTs AA850657 inositol polyphosphate-5-phosphatase K Inpp5k 287533 NM_001013859 0001701 // in utero embryonic development // not recorded /// 0032868 // response to insulin stimulus // not recorded /// 0033137 // negative regulation of peptidyl-serine phosphorylation // not recorded /// 0042593 // glucose homeostasis // not recorded 0001726 // ruffle // not recorded /// 0005624 // membrane fraction // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005829 // cytosol // not recorded /// 0043005 // neuron projection // not recorded 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0004437 // inositol or phosphatidylinositol phosphatase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016312 // inositol bisphosphate phosphatase activity // not recorded /// 0046030 // inositol trisphosphate phosphatase activity // not recorded 1389571_at BG666368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666368 /DB_XREF=gi:13888290 /DB_XREF=DRACHF07 /CLONE=DRACHF07 /FEA=EST /CNT=10 /TID=Rn.24237.2 /TIER=Stack /STK=6 /UG=Rn.24237 /UG_TITLE=ESTs BG666368 signal transducer and activator of transcription 2 Stat2 288774 NM_001011905 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389572_at AI410864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410864 /DB_XREF=gi:4254368 /DB_XREF=EST239157 /CLONE=RHECZ19 /FEA=EST /CNT=10 /TID=Rn.22413.1 /TIER=Stack /STK=6 /UG=Rn.22413 /UG_TITLE=ESTs, Weakly similar to MAOX RAT NADP-DEPENDENT MALIC ENZYME (R.norvegicus) AI410864 malic enzyme 3, NADP(+)-dependent, mitochondrial Me3 361602 NM_001108491 0006090 // pyruvate metabolic process // not recorded /// 0006108 // malate metabolic process // inferred from electronic annotation /// 0006108 // malate metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004470 // malic enzyme activity // inferred from electronic annotation /// 0004470 // malic enzyme activity // not recorded /// 0004473 // malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation 1389573_at AI170665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170665 /DB_XREF=gi:4134531 /DB_XREF=EST216600 /CLONE=RMUAZ64 /FEA=EST /CNT=10 /TID=Rn.23367.1 /TIER=Stack /STK=6 /UG=Rn.23367 /UG_TITLE=ESTs AI170665 ChaC, cation transport regulator homolog 1 (E. coli) Chac1 362196 NM_001173437 /// XM_001080834 /// XM_342497 0070059 // apoptosis in response to endoplasmic reticulum stress // inferred from electronic annotation /// 0070059 // apoptosis in response to endoplasmic reticulum stress // not recorded 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389574_at AI014004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI014004 /DB_XREF=gi:3226940 /DB_XREF=EST207559 /CLONE=RSPBD17 /FEA=EST /CNT=27 /TID=Rn.22450.1 /TIER=Stack /STK=6 /UG=Rn.22450 /UG_TITLE=ESTs, Moderately similar to A56465 transcription factor IIIC2 beta chain (H.sapiens) AI014004 general transcription factor IIIC, polypeptide 2, beta Gtf3c2 313914 NM_001025120 0006351 // transcription, DNA-dependent // not recorded 0000127 // transcription factor TFIIIC complex // not recorded 0003677 // DNA binding // not recorded /// 0003709 // RNA polymerase III transcription factor activity // not recorded 1389575_at BF284868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284868 /DB_XREF=gi:11215938 /DB_XREF=EST449459 /CLONE=RGIEX29 /FEA=EST /CNT=16 /TID=Rn.20471.1 /TIER=Stack /STK=6 /UG=Rn.20471 /UG_TITLE=ESTs BF284868 similar to sid2057p RGD1311703 293160 NM_001013898 1389576_at AA944322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944322 /DB_XREF=gi:3104238 /DB_XREF=EST199821 /CLONE=REMAF38 /FEA=EST /CNT=13 /TID=Rn.7712.1 /TIER=Stack /STK=6 /UG=Rn.7712 /UG_TITLE=ESTs, Highly similar to S54857 small nuclear ribonucleoprotein U2B - mouse (M.musculus) AA944322 small nuclear ribonucleoprotein polypeptide B'' Snrpb2 362223 NM_001108592 0008380 // RNA splicing // not recorded 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389577_at AI101160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101160 /DB_XREF=gi:3706120 /DB_XREF=EST210449 /CLONE=RBRBG31 /FEA=EST /CNT=12 /TID=Rn.2021.1 /TIER=Stack /STK=6 /UG=Rn.2021 /UG_TITLE=ESTs, Weakly similar to S46930 teg292 protein - mouse (M.musculus) AI101160 cirrhosis, autosomal recessive 1A Cirh1a 291987 NM_001009640 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity 0005515 // protein binding // not recorded 1389578_at AA850740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850740 /DB_XREF=gi:4131881 /DB_XREF=EST193508 /CLONE=ROVAK25 /FEA=EST /CNT=12 /TID=Rn.9475.1 /TIER=Stack /STK=6 /UG=Rn.9475 /UG_TITLE=ESTs AA850740 yrdC domain containing (E.coli) Yrdc 319113 NM_175604 0051051 // negative regulation of transport // inferred from electronic annotation /// 0051051 // negative regulation of transport // not recorded 0005624 // membrane fraction // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389579_at BI284372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284372 /DB_XREF=gi:14936991 /DB_XREF=UI-R-CX0s-cco-d-05-0-UI.s1 /CLONE=UI-R-CX0s-cco-d-05-0-UI /FEA=EST /CNT=11 /TID=Rn.17918.1 /TIER=Stack /STK=6 /UG=Rn.17918 /UG_TITLE=ESTs BI284372 1389580_at BM384827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384827 /DB_XREF=gi:18184880 /DB_XREF=UI-R-DY0-ckl-k-18-0-UI.s1 /CLONE=UI-R-DY0-ckl-k-18-0-UI /FEA=EST /CNT=11 /TID=Rn.1039.1 /TIER=Stack /STK=6 /UG=Rn.1039 /UG_TITLE=ESTs BM384827 helicase-like transcription factor Hltf 295568 NM_001106478 0006200 // ATP catabolic process // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1389581_at BF390510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390510 /DB_XREF=gi:11375356 /DB_XREF=UI-R-CA1-bch-h-07-0-UI.s1 /CLONE=UI-R-CA1-bch-h-07-0-UI /FEA=EST /CNT=11 /TID=Rn.51945.1 /TIER=Stack /STK=6 /UG=Rn.51945 /UG_TITLE=ESTs BF390510 interleukin 33 Il33 361749 NM_001014166 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389582_at AI407405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407405 /DB_XREF=gi:4250909 /DB_XREF=EST235694 /CLONE=ROVED45 /FEA=EST /CNT=10 /TID=Rn.19234.1 /TIER=Stack /STK=6 /UG=Rn.19234 /UG_TITLE=ESTs, Weakly similar to retinoblastoma binding protein 7 (Rattus norvegicus) (R.norvegicus) AI407405 similar to Nucleoporin Nup43 LOC683983 683983 NM_001128191 1389583_at BF282712 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282712 /DB_XREF=gi:11213782 /DB_XREF=EST447303 /CLONE=RGIDS05 /FEA=EST /CNT=10 /TID=Rn.12049.1 /TIER=Stack /STK=6 /UG=Rn.12049 /UG_TITLE=ESTs BF282712 1389584_at AI101266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101266 /DB_XREF=gi:3706197 /DB_XREF=EST210555 /CLONE=RBRBK56 /FEA=EST /CNT=10 /TID=Rn.13394.1 /TIER=Stack /STK=6 /UG=Rn.13394 /UG_TITLE=ESTs AI101266 1389585_at BG377510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377510 /DB_XREF=gi:13301982 /DB_XREF=UI-R-CU0-bvd-f-02-0-UI.s1 /CLONE=UI-R-CU0-bvd-f-02-0-UI /FEA=EST /CNT=10 /TID=Rn.22703.1 /TIER=Stack /STK=6 /UG=Rn.22703 /UG_TITLE=ESTs BG377510 1389586_at BE107169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107169 /DB_XREF=gi:8499274 /DB_XREF=UI-R-BS1-ayq-f-06-0-UI.s1 /CLONE=UI-R-BS1-ayq-f-06-0-UI /FEA=EST /CNT=10 /TID=Rn.23464.1 /TIER=Stack /STK=6 /UG=Rn.23464 /UG_TITLE=ESTs BE107169 1389587_at BM384966 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384966 /DB_XREF=gi:18185019 /DB_XREF=UI-R-CN1-cjl-n-10-0-UI.s2 /CLONE=UI-R-CN1-cjl-n-10-0-UI /FEA=EST /CNT=10 /TID=Rn.25999.1 /TIER=Stack /STK=6 /UG=Rn.25999 /UG_TITLE=ESTs, Highly similar to DCMSOP orotidine-5-phosphate decarboxylase (M.musculus) BM384966 uridine monophosphate synthetase Umps 288051 NM_001025402 0006207 // 'de novo' pyrimidine base biosynthetic process // inferred from electronic annotation /// 0006221 // pyrimidine nucleotide biosynthetic process // inferred from electronic annotation /// 0006222 // UMP biosynthetic process // not recorded /// 0006222 // UMP biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009116 // nucleoside metabolic process // inferred from electronic annotation /// 0044205 // 'de novo' UMP biosynthetic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004588 // orotate phosphoribosyltransferase activity // inferred from electronic annotation /// 0004588 // orotate phosphoribosyltransferase activity // not recorded /// 0004590 // orotidine-5'-phosphate decarboxylase activity // inferred from electronic annotation /// 0004590 // orotidine-5'-phosphate decarboxylase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation 1389588_at H35646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H35646 /DB_XREF=gi:981063 /DB_XREF=EST110017 /CLONE=RPNAY71 /FEA=EST /CNT=10 /TID=Rn.7241.1 /TIER=Stack /STK=6 /UG=Rn.7241 /UG_TITLE=ESTs H35646 calcium activated nucleotidase 1 Cant1 246272 NM_144754 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0004871 // signal transducer activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0016462 // pyrophosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017110 // nucleoside-diphosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389589_at BE105898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105898 /DB_XREF=gi:8498000 /DB_XREF=UI-R-BO1-asj-e-03-0-UI.s1 /CLONE=UI-R-BO1-asj-e-03-0-UI /FEA=EST /CNT=10 /TID=Rn.22273.1 /TIER=Stack /STK=6 /UG=Rn.22273 /UG_TITLE=ESTs BE105898 1389590_at AA925513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925513 /DB_XREF=gi:4236704 /DB_XREF=UI-R-A1-ep-d-10-0-UI.s1 /CLONE=UI-R-A1-ep-d-10-0-UI /FEA=EST /CNT=10 /TID=Rn.3844.1 /TIER=Stack /STK=6 /UG=Rn.3844 /UG_TITLE=ESTs AA925513 1389591_at BM388471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388471 /DB_XREF=gi:18188524 /DB_XREF=UI-R-DZ0-ckm-g-23-0-UI.s1 /CLONE=UI-R-DZ0-ckm-g-23-0-UI /FEA=EST /CNT=10 /TID=Rn.18680.1 /TIER=Stack /STK=6 /UG=Rn.18680 /UG_TITLE=ESTs BM388471 1389592_at AI317817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI317817 /DB_XREF=gi:4033084 /DB_XREF=EST234488 /CLONE=RPPAA23 /FEA=EST /CNT=9 /TID=Rn.23816.1 /TIER=Stack /STK=6 /UG=Rn.23816 /UG_TITLE=ESTs AI317817 1389593_at BM392287 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392287 /DB_XREF=gi:18192340 /DB_XREF=UI-R-DO1-ckp-p-19-0-UI.s1 /CLONE=UI-R-DO1-ckp-p-19-0-UI /FEA=EST /CNT=9 /TID=Rn.13825.1 /TIER=Stack /STK=6 /UG=Rn.13825 /UG_TITLE=ESTs BM392287 1389594_at BI284608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284608 /DB_XREF=gi:14937432 /DB_XREF=UI-R-DE0-cac-b-03-0-UI.s1 /CLONE=UI-R-DE0-cac-b-03-0-UI /FEA=EST /CNT=9 /TID=Rn.15380.1 /TIER=Stack /STK=6 /UG=Rn.15380 /UG_TITLE=ESTs, Highly similar to T17237 hypothetical protein DKFZp434P106.1 (H.sapiens) BI284608 abhydrolase domain containing 12 Abhd12 499913 NM_001024314 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation /// 0047372 // acylglycerol lipase activity // inferred from electronic annotation 1389595_at BM386615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386615 /DB_XREF=gi:18186668 /DB_XREF=UI-R-CN1-cjg-b-19-0-UI.s1 /CLONE=UI-R-CN1-cjg-b-19-0-UI /FEA=EST /CNT=9 /TID=Rn.18304.1 /TIER=Stack /STK=6 /UG=Rn.18304 /UG_TITLE=ESTs BM386615 dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) Dus2l 291978 NM_001106181 0008033 // tRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0017150 // tRNA dihydrouridine synthase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1389596_at BM389642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389642 /DB_XREF=gi:18189695 /DB_XREF=UI-R-CN1-cjo-i-19-0-UI.s1 /CLONE=UI-R-CN1-cjo-i-19-0-UI /FEA=EST /CNT=9 /TID=Rn.24568.1 /TIER=Stack /STK=6 /UG=Rn.24568 /UG_TITLE=ESTs BM389642 COX18 cytochrome c oxidase assembly homolog (S. cerevisiae) Cox18 289522 NM_001106000 0008535 // respiratory chain complex IV assembly // not recorded /// 0051204 // protein insertion into mitochondrial membrane // not recorded /// 0051205 // protein insertion into membrane // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031305 // integral to mitochondrial inner membrane // not recorded 0008565 // protein transporter activity // not recorded 1389597_at BI293445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293445 /DB_XREF=gi:14954945 /DB_XREF=UI-R-DK0-cdq-e-10-0-UI.s1 /CLONE=UI-R-DK0-cdq-e-10-0-UI /FEA=EST /CNT=9 /TID=Rn.23325.1 /TIER=Stack /STK=6 /UG=Rn.23325 /UG_TITLE=ESTs BI293445 PiggyBac transposable element derived 5 Pgbd5 292098 NM_001106198 1389598_at BI280367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280367 /DB_XREF=gi:14929081 /DB_XREF=UI-R-CS0s-cbh-b-09-0-UI.s1 /CLONE=UI-R-CS0s-cbh-b-09-0-UI /FEA=EST /CNT=9 /TID=Rn.14593.1 /TIER=Stack /STK=6 /UG=Rn.14593 /UG_TITLE=ESTs BI280367 ceroid-lipofuscinosis, neuronal 6 Cln6 315746 NM_001191794 /// XM_001074158 /// XM_236325 0001573 // ganglioside metabolic process // not recorded /// 0007040 // lysosome organization // not recorded /// 0007042 // lysosomal lumen acidification // not recorded /// 0007601 // visual perception // not recorded /// 0008203 // cholesterol metabolic process // not recorded /// 0030203 // glycosaminoglycan metabolic process // not recorded /// 0031987 // locomotion involved in locomotory behavior // not recorded /// 0044265 // cellular macromolecule catabolic process // not recorded /// 0045862 // positive regulation of proteolysis // not recorded 0005783 // endoplasmic reticulum // not recorded /// 0005788 // endoplasmic reticulum lumen // not recorded 0042803 // protein homodimerization activity // not recorded 1389599_at BF282851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282851 /DB_XREF=gi:11213921 /DB_XREF=EST447442 /CLONE=RGIDU07 /FEA=EST /CNT=9 /TID=Rn.36914.1 /TIER=Stack /STK=6 /UG=Rn.36914 /UG_TITLE=ESTs BF282851 aarF domain containing kinase 1 Adck1 366698 NM_001108985 0006468 // protein phosphorylation // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0004672 // protein kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1389600_at AW524433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524433 /DB_XREF=gi:7166818 /DB_XREF=UI-R-BO0-ahx-c-12-0-UI.s1 /CLONE=UI-R-BO0-ahx-c-12-0-UI /FEA=EST /CNT=9 /TID=Rn.15552.1 /TIER=Stack /STK=6 /UG=Rn.15552 /UG_TITLE=ESTs AW524433 hypothetical protein LOC363306 LOC363306 363306 XM_001068086 /// XM_002727301 1389601_at BI293610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293610 /DB_XREF=gi:14955268 /DB_XREF=UI-R-DK0-cds-e-12-0-UI.s1 /CLONE=UI-R-DK0-cds-e-12-0-UI /FEA=EST /CNT=9 /TID=Rn.24805.2 /TIER=Stack /STK=6 /UG=Rn.24805 /UG_TITLE=ESTs BI293610 1389602_at BF396759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396759 /DB_XREF=gi:11381740 /DB_XREF=UI-R-BS2-beu-g-12-0-UI.s1 /CLONE=UI-R-BS2-beu-g-12-0-UI /FEA=EST /CNT=9 /TID=Rn.25416.1 /TIER=Stack /STK=6 /UG=Rn.25416 /UG_TITLE=ESTs BF396759 1389603_at AA964544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964544 /DB_XREF=gi:4279418 /DB_XREF=UI-R-E1-go-a-05-0-UI.s1 /CLONE=UI-R-E1-go-a-05-0-UI /FEA=EST /CNT=9 /TID=Rn.11837.1 /TIER=Stack /STK=6 /UG=Rn.11837 /UG_TITLE=ESTs AA964544 1389604_at BI294714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294714 /DB_XREF=gi:14957438 /DB_XREF=UI-R-DK0-ceb-c-03-0-UI.s1 /CLONE=UI-R-DK0-ceb-c-03-0-UI /FEA=EST /CNT=9 /TID=Rn.6678.1 /TIER=Stack /STK=6 /UG=Rn.6678 /UG_TITLE=ESTs BI294714 heat shock protein 12B Hspa12b 311427 NM_001107778 1389605_at AI101952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101952 /DB_XREF=gi:3706793 /DB_XREF=EST211241 /CLONE=RBRBX25 /FEA=EST /CNT=9 /TID=Rn.18970.1 /TIER=Stack /STK=6 /UG=Rn.18970 /UG_TITLE=ESTs, Weakly similar to T00331 hypothetical protein KIAA0555 (H.sapiens) AI101952 janus kinase and microtubule interacting protein 1 Jakmip1 305434 NM_001033894 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0000300 // peripheral to membrane of membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded 0003723 // RNA binding // not recorded /// 0019894 // kinesin binding // not recorded /// 0050811 // GABA receptor binding // not recorded 1389606_at BI303298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303298 /DB_XREF=gi:14979578 /DB_XREF=UI-R-DQ0-ciz-p-13-0-UI.s1 /CLONE=UI-R-DQ0-ciz-p-13-0-UI /FEA=EST /CNT=9 /TID=Rn.64214.1 /TIER=Stack /STK=6 /UG=Rn.64214 /UG_TITLE=ESTs BI303298 anaphase promoting complex subunit 1 Anapc1 311412 NM_001107771 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070979 // protein K11-linked ubiquitination // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005680 // anaphase-promoting complex // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded 1389607_at BF285211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285211 /DB_XREF=gi:11216281 /DB_XREF=EST449802 /CLONE=RGIFB85 /FEA=EST /CNT=9 /TID=Rn.15115.1 /TIER=Stack /STK=6 /UG=Rn.15115 /UG_TITLE=ESTs BF285211 REST corepressor 2 Rcor2 305811 NM_001013994 0006350 // transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // inferred from mutant phenotype /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation 1389608_at AI235192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235192 /DB_XREF=gi:3828698 /DB_XREF=EST231754 /CLONE=ROVCO66 /FEA=EST /CNT=9 /TID=Rn.25523.1 /TIER=Stack /STK=6 /UG=Rn.25523 /UG_TITLE=ESTs, Highly similar to ABF2_HUMAN ATP-BINDING CASSETTE, SUB-FAMILY F, MEMBER 2 (IRON INHIBITED ABC TRANSPORTER 2) (H.sapiens) AI235192 ATP-binding cassette, sub-family F (GCN20), member 2 Abcf2 311959 NM_001109666 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1389609_at BG378884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378884 /DB_XREF=gi:13303356 /DB_XREF=UI-R-CV1-bvu-a-04-0-UI.s1 /CLONE=UI-R-CV1-bvu-a-04-0-UI /FEA=EST /CNT=9 /TID=Rn.23905.1 /TIER=Stack /STK=6 /UG=Rn.23905 /UG_TITLE=ESTs BG378884 transmembrane 7 superfamily member 3 Tm7sf3 297725 NM_001011970 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1389610_at AW520754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520754 /DB_XREF=gi:7163132 /DB_XREF=UI-R-BJ0p-agh-b-05-0-UI.s1 /CLONE=UI-R-BJ0p-agh-b-05-0-UI /FEA=EST /CNT=9 /TID=Rn.15536.1 /TIER=Stack /STK=6 /UG=Rn.15536 /UG_TITLE=ESTs AW520754 1389611_at AA849857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849857 /DB_XREF=gi:4131769 /DB_XREF=EST192624 /CLONE=RMUAJ78 /FEA=EST /CNT=9 /TID=Rn.9975.2 /TIER=Stack /STK=6 /UG=Rn.9975 /LL=25696 /UG_GENE=Vldlr /UG_TITLE=Very low density lipoprotein receptor AA849857 very low density lipoprotein receptor Vldlr 25696 NM_013155 0001666 // response to hypoxia // inferred from expression pattern /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // traceable author statement /// 0007507 // heart development // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0021987 // cerebral cortex development // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0034447 // very-low-density lipoprotein particle clearance // not recorded /// 0034447 // very-low-density lipoprotein particle clearance // inferred from sequence or structural similarity /// 0034447 // very-low-density lipoprotein particle clearance // inferred from electronic annotation /// 0042149 // cellular response to glucose starvation // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0071222 // cellular response to lipopolysaccharide // inferred from expression pattern /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from direct assay 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005905 // coated pit // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0034361 // very-low-density lipoprotein particle // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030229 // very-low-density lipoprotein receptor activity // not recorded /// 0030229 // very-low-density lipoprotein receptor activity // inferred from sequence or structural similarity /// 0030229 // very-low-density lipoprotein receptor activity // inferred from electronic annotation /// 0030296 // protein tyrosine kinase activator activity // traceable author statement 1389612_at AI410941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410941 /DB_XREF=gi:4254445 /DB_XREF=EST239234 /CLONE=RHECV70 /FEA=EST /CNT=8 /TID=Rn.8721.1 /TIER=Stack /STK=6 /UG=Rn.8721 /UG_TITLE=ESTs, Weakly similar to A60716 somatotropin intron-related protein RDE.25 - rat (R.norvegicus) AI410941 1389613_at AI234712 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234712 /DB_XREF=gi:3828218 /DB_XREF=EST231274 /CLONE=ROVCG66 /FEA=EST /CNT=8 /TID=Rn.1803.1 /TIER=Stack /STK=6 /UG=Rn.1803 /UG_TITLE=ESTs AI234712 1389614_at AI172472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172472 /DB_XREF=gi:3712512 /DB_XREF=EST218483 /CLONE=RMUCA28 /FEA=EST /CNT=8 /TID=Rn.11638.1 /TIER=Stack /STK=6 /UG=Rn.11638 /UG_TITLE=ESTs AI172472 HCCA2 protein /// Mps one binder kinase activator-like 2 Hcca2 /// LOC100360882 100360882 /// 499288 NM_001109159 /// XM_002728845 0005515 // protein binding // inferred from electronic annotation 1389615_at BI284801 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284801 /DB_XREF=gi:14937805 /DB_XREF=UI-R-CX0s-ccs-d-03-0-UI.s1 /CLONE=UI-R-CX0s-ccs-d-03-0-UI /FEA=EST /CNT=8 /TID=Rn.48893.1 /TIER=Stack /STK=6 /UG=Rn.48893 /UG_TITLE=ESTs, Weakly similar to F25D7.1.p (Caenorhabditis elegans) (C.elegans) BI284801 Der1-like domain family, member 1 Derl1 362912 NM_001014202 0030433 // ER-associated protein catabolic process // inferred from electronic annotation /// 0030433 // ER-associated protein catabolic process // not recorded /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // not recorded /// 0030970 // retrograde protein transport, ER to cytosol // inferred from electronic annotation /// 0030970 // retrograde protein transport, ER to cytosol // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042288 // MHC class I protein binding // inferred from electronic annotation /// 0042288 // MHC class I protein binding // not recorded 1389616_at BF403163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403163 /DB_XREF=gi:11391138 /DB_XREF=UI-R-CA0-bhs-d-06-0-UI.s1 /CLONE=UI-R-CA0-bhs-d-06-0-UI /FEA=EST /CNT=8 /TID=Rn.32663.1 /TIER=Stack /STK=6 /UG=Rn.32663 /UG_TITLE=ESTs BF403163 1389617_at BM392135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392135 /DB_XREF=gi:18192188 /DB_XREF=UI-R-DO1-ckp-c-02-0-UI.s1 /CLONE=UI-R-DO1-ckp-c-02-0-UI /FEA=EST /CNT=8 /TID=Rn.13969.1 /TIER=Stack /STK=6 /UG=Rn.13969 /UG_TITLE=ESTs BM392135 ELK3, member of ETS oncogene family Elk3 362871 NM_001108743 0001525 // angiogenesis // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0042060 // wound healing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005739 // mitochondrion // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0032422 // purine-rich negative regulatory element binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1389618_at BI285035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285035 /DB_XREF=gi:14938278 /DB_XREF=UI-R-DB0-byv-e-01-0-UI.s1 /CLONE=UI-R-DB0-byv-e-01-0-UI /FEA=EST /CNT=8 /TID=Rn.12529.1 /TIER=Stack /STK=6 /UG=Rn.12529 /UG_TITLE=ESTs BI285035 1389619_at AW529588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529588 /DB_XREF=gi:7172002 /DB_XREF=UI-R-BT1-akn-a-06-0-UI.s1 /CLONE=UI-R-BT1-akn-a-06-0-UI /FEA=EST /CNT=8 /TID=Rn.28180.1 /TIER=Stack /STK=6 /UG=Rn.28180 /UG_TITLE=ESTs AW529588 1389620_at AW525235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525235 /DB_XREF=gi:7167620 /DB_XREF=UI-R-BJ0p-aip-d-02-0-UI.s1 /CLONE=UI-R-BJ0p-aip-d-02-0-UI /FEA=EST /CNT=8 /TID=Rn.42281.1 /TIER=Stack /STK=6 /UG=Rn.42281 /UG_TITLE=ESTs AW525235 suppressor of variegation 4-20 homolog 2 (Drosophila) Suv420h2 308345 NM_001107475 0006350 // transcription // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016571 // histone methylation // inferred from electronic annotation /// 0016571 // histone methylation // not recorded /// 0018022 // peptidyl-lysine methylation // not recorded /// 0034770 // histone H4-K20 methylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0000780 // condensed nuclear chromosome, centromeric region // inferred from electronic annotation /// 0000780 // condensed nuclear chromosome, centromeric region // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0042799 // histone methyltransferase activity (H4-K20 specific) // inferred from electronic annotation /// 0042799 // histone methyltransferase activity (H4-K20 specific) // not recorded 1389621_at BE113454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113454 /DB_XREF=gi:8505559 /DB_XREF=UI-R-BJ1-awl-e-05-0-UI.s1 /CLONE=UI-R-BJ1-awl-e-05-0-UI /FEA=EST /CNT=8 /TID=Rn.39152.1 /TIER=Stack /STK=6 /UG=Rn.39152 /UG_TITLE=ESTs BE113454 FIP1 like 1 (S. cerevisiae) Fip1l1 289582 NM_001008295 0006397 // mRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation 1389622_at AI232643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232643 /DB_XREF=gi:4135780 /DB_XREF=EST229331 /CLONE=RKICE63 /FEA=EST /CNT=8 /TID=Rn.14686.1 /TIER=Stack /STK=6 /UG=Rn.14686 /UG_TITLE=ESTs AI232643 solute carrier family 25, member 13 (citrin) Slc25a13 362322 XM_001054092 /// XM_342640 0003333 // amino acid transmembrane transport // not recorded /// 0006754 // ATP biosynthetic process // not recorded /// 0015807 // L-amino acid transport // not recorded /// 0015810 // aspartate transport // not recorded /// 0015813 // L-glutamate transport // not recorded /// 0043490 // malate-aspartate shuttle // not recorded /// 0045333 // cellular respiration // not recorded /// 0051592 // response to calcium ion // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005313 // L-glutamate transmembrane transporter activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0015183 // L-aspartate transmembrane transporter activity // not recorded 1389623_at AA849092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849092 /DB_XREF=gi:4131702 /DB_XREF=EST191859 /CLONE=RMUAB49 /FEA=EST /CNT=8 /TID=Rn.22826.1 /TIER=Stack /STK=6 /UG=Rn.22826 /UG_TITLE=ESTs AA849092 activating transcription factor 1 Atf1 315305 NM_001100895 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0010976 // positive regulation of neuron projection development // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0032025 // response to cobalt ion // inferred from expression pattern /// 0043623 // cellular protein complex assembly // inferred from mutant phenotype /// 0045740 // positive regulation of DNA replication // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from direct assay /// 0005667 // transcription factor complex // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from direct assay /// 0032403 // protein complex binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046983 // protein dimerization activity // inferred from electronic annotation 1389624_s_at AA851443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851443 /DB_XREF=gi:2938983 /DB_XREF=EST194211 /CLONE=RPLAG64 /FEA=EST /CNT=8 /TID=Rn.6753.1 /TIER=Stack /STK=6 /UG=Rn.6753 /UG_TITLE=ESTs AA851443 exocyst complex component 3 Exoc3 252881 NM_001024964 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 1389625_at BI299402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299402 /DB_XREF=gi:14975682 /DB_XREF=UI-R-CV2-chu-g-06-0-UI.s1 /CLONE=UI-R-CV2-chu-g-06-0-UI /FEA=EST /CNT=8 /TID=Rn.72987.1 /TIER=Stack /STK=6 /UG=Rn.72987 /UG_TITLE=ESTs, Weakly similar to F11C1.1.p (Caenorhabditis elegans) (C.elegans) BI299402 coiled-coil-helix-coiled-coil-helix domain containing 4 Chchd4 312559 NM_001013431 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation 1389626_at AA818125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818125 /DB_XREF=gi:4198639 /DB_XREF=UI-R-A0-am-h-05-0-UI.s1 /CLONE=UI-R-A0-am-h-05-0-UI /FEA=EST /CNT=8 /TID=Rn.1285.1 /TIER=Stack /STK=6 /UG=Rn.1285 /UG_TITLE=ESTs AA818125 0006810 // transport // inferred from electronic annotation /// 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay 1389627_at BF550270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550270 /DB_XREF=gi:11659958 /DB_XREF=UI-R-A1-ec-f-08-0-UI.r1 /CLONE=UI-R-A1-ec-f-08-0-UI /FEA=EST /CNT=8 /TID=Rn.8407.1 /TIER=Stack /STK=6 /UG=Rn.8407 /UG_TITLE=ESTs, Weakly similar to S25288 BTEB protein - rat (R.norvegicus) BF550270 zinc finger protein 746 Znf746 312303 NM_001100852 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1389628_at BG371532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371532 /DB_XREF=gi:13268069 /DB_XREF=UI-R-CW0-bvw-e-03-0-UI.s1 /CLONE=UI-R-CW0-bvw-e-03-0-UI /FEA=EST /CNT=8 /TID=Rn.37807.1 /TIER=Stack /STK=6 /UG=Rn.37807 /UG_TITLE=ESTs BG371532 phospholipase C, delta 3 Plcd3 287745 NM_001105845 0001525 // angiogenesis // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0060716 // labyrinthine layer blood vessel development // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay 0004435 // phosphoinositide phospholipase C activity // inferred from electronic annotation /// 0004629 // phospholipase C activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation 1389629_at AA819400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819400 /DB_XREF=gi:4228538 /DB_XREF=UI-R-A0-bl-e-04-0-UI.s1 /CLONE=UI-R-A0-bl-e-04-0-UI /FEA=EST /CNT=8 /TID=Rn.17062.1 /TIER=Stack /STK=6 /UG=Rn.17062 /UG_TITLE=ESTs, Highly similar to T46386 hypothetical protein DKFZp434P011.1 (H.sapiens) AA819400 PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae) Prpf6 366276 NM_001079766 0000244 // assembly of spliceosomal tri-snRNP // inferred from electronic annotation /// 0000244 // assembly of spliceosomal tri-snRNP // not recorded /// 0000398 // nuclear mRNA splicing, via spliceosome // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005682 // U5 snRNP // inferred from electronic annotation /// 0005682 // U5 snRNP // not recorded /// 0046540 // U4/U6 x U5 tri-snRNP complex // not recorded /// 0046540 // U4/U6 x U5 tri-snRNP complex // inferred from electronic annotation /// 0071001 // U4/U6 snRNP // inferred from electronic annotation /// 0071001 // U4/U6 snRNP // not recorded 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043021 // ribonucleoprotein binding // inferred from electronic annotation /// 0043021 // ribonucleoprotein binding // not recorded /// 0050681 // androgen receptor binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // not recorded 1389630_at AI168941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI168941 /DB_XREF=gi:3705249 /DB_XREF=EST214769 /CLONE=RKIBK96 /FEA=EST /CNT=8 /TID=Rn.18224.1 /TIER=Stack /STK=6 /UG=Rn.18224 /UG_TITLE=ESTs AI168941 1389631_at AA943109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943109 /DB_XREF=gi:3103025 /DB_XREF=EST198608 /CLONE=RBRAF20 /FEA=EST /CNT=8 /TID=Rn.7505.1 /TIER=Stack /STK=6 /UG=Rn.7505 /UG_TITLE=ESTs AA943109 zinc finger protein 609 Znf609 363412 NM_001173371 /// XM_001076726 /// XM_343738 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1389632_at AA799294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799294 /DB_XREF=gi:4131381 /DB_XREF=EST188791 /CLONE=RHEAA15 /FEA=EST /CNT=8 /TID=Rn.3782.1 /TIER=Stack /STK=6 /UG=Rn.3782 /UG_TITLE=ESTs AA799294 Rho-related BTB domain containing 1 Rhobtb1 309722 NM_001107622 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1389633_at BI290172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290172 /DB_XREF=gi:14948496 /DB_XREF=UI-R-DK0-cft-a-09-0-UI.s1 /CLONE=UI-R-DK0-cft-a-09-0-UI /FEA=EST /CNT=8 /TID=Rn.1603.1 /TIER=Stack /STK=6 /UG=Rn.1603 /UG_TITLE=ESTs BI290172 1389634_at AI101470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101470 /DB_XREF=gi:3706362 /DB_XREF=EST210759 /CLONE=RBRBP46 /FEA=EST /CNT=8 /TID=Rn.18094.1 /TIER=Stack /STK=6 /UG=Rn.18094 /UG_TITLE=ESTs, Highly similar to AMP1_HUMAN PUTATIVE METHIONINE AMINOPEPTIDASE 1 (H.sapiens) AI101470 methionyl aminopeptidase 1 Metap1 295500 NM_001106476 0006508 // proteolysis // inferred from electronic annotation /// 0009987 // cellular process // inferred from electronic annotation 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008235 // metalloexopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389635_at BE120878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120878 /DB_XREF=gi:8512983 /DB_XREF=UI-R-BS1-azt-e-09-0-UI.s1 /CLONE=UI-R-BS1-azt-e-09-0-UI /FEA=EST /CNT=8 /TID=Rn.16982.1 /TIER=Stack /STK=6 /UG=Rn.16982 /UG_TITLE=ESTs BE120878 1389636_at AI231088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231088 /DB_XREF=gi:4135612 /DB_XREF=EST227776 /CLONE=REMDF17 /FEA=EST /CNT=8 /TID=Rn.22493.1 /TIER=Stack /STK=6 /UG=Rn.22493 /UG_TITLE=ESTs AI231088 similar to KIAA0833 protein Camta1 362665 NM_001195559 /// NM_001195560 /// XM_002726619 /// XM_002729575 0005634 // nucleus // inferred from electronic annotation 0005516 // calmodulin binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1389637_at AI227731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227731 /DB_XREF=gi:3811618 /DB_XREF=EST224426 /CLONE=RBRCK74 /FEA=EST /CNT=8 /TID=Rn.24257.1 /TIER=Stack /STK=6 /UG=Rn.24257 /UG_TITLE=ESTs AI227731 1389638_at BG380701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380701 /DB_XREF=gi:13305173 /DB_XREF=UI-R-CT0-bua-d-10-0-UI.s1 /CLONE=UI-R-CT0-bua-d-10-0-UI /FEA=EST /CNT=8 /TID=Rn.23025.1 /TIER=Stack /STK=6 /UG=Rn.23025 /UG_TITLE=ESTs BG380701 family with sequence similarity 160, member A2 Fam160a2 293343 NM_001005538 0006810 // transport // inferred from electronic annotation /// 0007032 // endosome organization // not recorded /// 0007032 // endosome organization // inferred from sequence or structural similarity /// 0007040 // lysosome organization // not recorded /// 0007040 // lysosome organization // inferred from sequence or structural similarity /// 0008333 // endosome to lysosome transport // not recorded /// 0008333 // endosome to lysosome transport // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0045022 // early endosome to late endosome transport // not recorded /// 0045022 // early endosome to late endosome transport // inferred from sequence or structural similarity 0070695 // FHF complex // not recorded /// 0070695 // FHF complex // inferred from sequence or structural similarity 0005515 // protein binding // not recorded 1389639_at BF283302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283302 /DB_XREF=gi:11214372 /DB_XREF=EST447893 /CLONE=RGIEA04 /FEA=EST /CNT=8 /TID=Rn.226.1 /TIER=Stack /STK=6 /UG=Rn.226 /UG_TITLE=ESTs BF283302 Similar to Shb protein RGD1565350 362513 XM_002726522 /// XM_002729477 0005515 // protein binding // inferred from electronic annotation 1389640_at BM391811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391811 /DB_XREF=gi:18191864 /DB_XREF=UI-R-DO1-cmk-o-15-0-UI.s1 /CLONE=UI-R-DO1-cmk-o-15-0-UI /FEA=EST /CNT=8 /TID=Rn.17111.1 /TIER=Stack /STK=6 /UG=Rn.17111 /UG_TITLE=ESTs BM391811 1389641_at BE349788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE349788 /DB_XREF=gi:9261641 /DB_XREF=hq43b05.x1 /CLONE=IMAGE:3122097 /FEA=EST /CNT=8 /TID=Rn.41654.1 /TIER=Stack /STK=6 /UG=Rn.41654 /UG_TITLE=ESTs BE349788 0045449 // regulation of transcription // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1389642_at H35643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H35643 /DB_XREF=gi:981060 /DB_XREF=EST108679 /CLONE=RPNAD91 /FEA=EST /CNT=8 /TID=Rn.18720.1 /TIER=Stack /STK=6 /UG=Rn.18720 /UG_TITLE=ESTs H35643 1389643_at H31790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31790 /DB_XREF=gi:977207 /DB_XREF=EST106187 /CLONE=RPCAY09 /FEA=EST /CNT=8 /TID=Rn.3125.1 /TIER=Stack /STK=6 /UG=Rn.3125 /UG_TITLE=ESTs H31790 widely-interspaced zinc finger motifs Wiz 314598 NM_001108064 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1389644_at BI289857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289857 /DB_XREF=gi:14947865 /DB_XREF=UI-R-DK0-cfp-a-11-0-UI.s1 /CLONE=UI-R-DK0-cfp-a-11-0-UI /FEA=EST /CNT=8 /TID=Rn.23289.1 /TIER=Stack /STK=6 /UG=Rn.23289 /UG_TITLE=ESTs BI289857 WD repeat domain 67 Wdr67 299949 NM_001134842 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1389645_at AI233266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233266 /DB_XREF=gi:3817146 /DB_XREF=EST229954 /CLONE=RKIDC93 /FEA=EST /CNT=8 /TID=Rn.4247.1 /TIER=Stack /STK=6 /UG=Rn.4247 /UG_TITLE=ESTs, Weakly similar to PROD MOUSE PROLINE OXIDASE, MITOCHONDRIAL PRECURSOR (M.musculus) AI233266 proline dehydrogenase (oxidase) 2 Prodh2 361538 NM_001038588 0006537 // glutamate biosynthetic process // inferred from electronic annotation /// 0006560 // proline metabolic process // inferred from electronic annotation /// 0006562 // proline catabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded 0004657 // proline dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1389646_at BE100584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100584 /DB_XREF=gi:8492479 /DB_XREF=UI-R-BJ1-auk-b-04-0-UI.s1 /CLONE=UI-R-BJ1-auk-b-04-0-UI /FEA=EST /CNT=12 /TID=Rn.30660.1 /TIER=Stack /STK=6 /UG=Rn.30660 /UG_TITLE=ESTs BE100584 CDC23 (cell division cycle 23, yeast, homolog) Cdc23 291689 NM_001100659 0000080 // G1 phase of mitotic cell cycle // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007080 // mitotic metaphase plate congression // inferred from electronic annotation /// 0030071 // regulation of mitotic metaphase/anaphase transition // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070979 // protein K11-linked ubiquitination // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005680 // anaphase-promoting complex // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1389647_at BM387990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387990 /DB_XREF=gi:18188043 /DB_XREF=UI-R-CN1-cjl-a-03-0-UI.s1 /CLONE=UI-R-CN1-cjl-a-03-0-UI /FEA=EST /CNT=11 /TID=Rn.12468.1 /TIER=Stack /STK=6 /UG=Rn.12468 /UG_TITLE=ESTs BM387990 1389648_at AI170382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170382 /DB_XREF=gi:3710422 /DB_XREF=EST216308 /CLONE=RLUCH61 /FEA=EST /CNT=10 /TID=Rn.28403.1 /TIER=Stack /STK=6 /UG=Rn.28403 /UG_TITLE=ESTs AI170382 receptor-interacting serine-threonine kinase 4 Ripk4 304053 NM_001107103 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1389649_at AI411897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411897 /DB_XREF=gi:4255401 /DB_XREF=EST240191 /CLONE=RKIEK02 /FEA=EST /CNT=10 /TID=Rn.12537.1 /TIER=Stack /STK=6 /UG=Rn.12537 /UG_TITLE=ESTs AI411897 1389650_at BI295153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295153 /DB_XREF=gi:14958313 /DB_XREF=UI-R-DK0-ceg-d-09-0-UI.s1 /CLONE=UI-R-DK0-ceg-d-09-0-UI /FEA=EST /CNT=9 /TID=Rn.43682.1 /TIER=Stack /STK=6 /UG=Rn.43682 /UG_TITLE=ESTs, Weakly similar to ZINC FINGER PROTEIN GFI-1 (R.norvegicus) BI295153 1389651_at AI177057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177057 /DB_XREF=gi:4134951 /DB_XREF=EST220664 /CLONE=ROVCA29 /FEA=EST /CNT=9 /TID=Rn.29067.1 /TIER=Stack /STK=6 /UG=Rn.29067 /UG_TITLE=ESTs AI177057 apelin Apln 58812 NM_031612 0002026 // regulation of the force of heart contraction // inferred from mutant phenotype /// 0007631 // feeding behavior // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0031652 // positive regulation of heat generation // inferred from mutant phenotype /// 0042327 // positive regulation of phosphorylation // inferred from mutant phenotype /// 0042756 // drinking behavior // inferred from mutant phenotype /// 0043576 // regulation of respiratory gaseous exchange // inferred from mutant phenotype /// 0045776 // negative regulation of blood pressure // inferred from direct assay /// 0045776 // negative regulation of blood pressure // inferred from mutant phenotype /// 0045906 // negative regulation of vasoconstriction // inferred from mutant phenotype /// 0045909 // positive regulation of vasodilation // inferred from mutant phenotype /// 0050878 // regulation of body fluid levels // inferred from mutant phenotype /// 0051461 // positive regulation of adrenocorticotropin secretion // inferred from mutant phenotype /// 0051466 // positive regulation of corticotropin-releasing hormone secretion // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0001664 // G-protein-coupled receptor binding // traceable author statement /// 0005179 // hormone activity // inferred from electronic annotation /// 0031704 // apelin receptor binding // inferred from direct assay /// 0031704 // apelin receptor binding // traceable author statement 1389652_at AI171655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171655 /DB_XREF=gi:3711695 /DB_XREF=EST217628 /CLONE=RMUBN89 /FEA=EST /CNT=9 /TID=Rn.12269.1 /TIER=Stack /STK=6 /UG=Rn.12269 /UG_TITLE=ESTs AI171655 1389653_at AW526087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526087 /DB_XREF=gi:7168472 /DB_XREF=UI-R-BO1-aiz-a-11-0-UI.s1 /CLONE=UI-R-BO1-aiz-a-11-0-UI /FEA=EST /CNT=8 /TID=Rn.46084.1 /TIER=Stack /STK=6 /UG=Rn.46084 /UG_TITLE=ESTs, Weakly similar to CDB4_HUMAN Protocadherin beta 4 precursor (PCDH-beta4) (H.sapiens) AW526087 protocadherin beta 9 Pcdhb9 680047 NM_001109390 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1389654_at BM392070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392070 /DB_XREF=gi:18192123 /DB_XREF=UI-R-DO1-ckp-e-21-0-UI.s1 /CLONE=UI-R-DO1-ckp-e-21-0-UI /FEA=EST /CNT=8 /TID=Rn.18668.1 /TIER=Stack /STK=6 /UG=Rn.18668 /UG_TITLE=ESTs BM392070 Plastin 1 (I isoform) Pls1 315926 NM_001108178 0005737 // cytoplasm // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation 1389655_at AA892330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892330 /DB_XREF=gi:3019209 /DB_XREF=EST196133 /CLONE=RKIAP15 /FEA=EST /CNT=8 /TID=Rn.13456.1 /TIER=Stack /STK=6 /UG=Rn.13456 /UG_TITLE=ESTs, Moderately similar to YCE7_HUMAN HYPOTHETICAL PROTEIN CGI-147 (H.sapiens) AA892330 peptidyl-tRNA hydrolase 2 Ptrh2 287593 NM_001013860 0006412 // translation // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0004045 // aminoacyl-tRNA hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1389656_at AA851945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851945 /DB_XREF=gi:2939485 /DB_XREF=EST194714 /CLONE=RSPAO66 /FEA=EST /CNT=8 /TID=Rn.6845.1 /TIER=Stack /STK=6 /UG=Rn.6845 /UG_TITLE=ESTs, Highly similar to TNE7_HUMAN TETRASPAN NET-7 (H.sapiens) AA851945 similar to Tetraspanin-15 (Tspan-15) (Transmembrane 4 superfamily member 15) (Tetraspan NET-7) LOC679462 679462 NM_001115032 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1389657_at AI175762 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175762 /DB_XREF=gi:3726400 /DB_XREF=EST219329 /CLONE=ROVBE93 /FEA=EST /CNT=8 /TID=Rn.24795.1 /TIER=Stack /STK=6 /UG=Rn.24795 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) AI175762 zinc finger protein 524 Znf524 365179 NM_001108905 0005622 // intracellular // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1389658_at BI283104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283104 /DB_XREF=gi:14934518 /DB_XREF=UI-R-CU0s-cca-a-10-0-UI.s1 /CLONE=UI-R-CU0s-cca-a-10-0-UI /FEA=EST /CNT=8 /TID=Rn.27691.1 /TIER=Stack /STK=6 /UG=Rn.27691 /UG_TITLE=ESTs BI283104 NOL1/NOP2/Sun domain family, member 2 Nsun2 361191 NM_001108403 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006702 // androgen biosynthetic process // inferred from electronic annotation /// 0030488 // tRNA methylation // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0003865 // 3-oxo-5-alpha-steroid 4-dehydrogenase activity // inferred from electronic annotation /// 0016428 // tRNA (cytosine-5-)-methyltransferase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation 1389659_at AI230591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230591 /DB_XREF=gi:3814478 /DB_XREF=EST227286 /CLONE=REMCY64 /FEA=EST /CNT=8 /TID=Rn.7778.1 /TIER=Stack /STK=6 /UG=Rn.7778 /UG_TITLE=ESTs, Weakly similar to TES1 RAT TESTIN 12 PRECURSOR (R.norvegicus) AI230591 cytotoxic T lymphocyte-associated protein 2 alpha Ctla2a 498690 NM_001109115 0008234 // cysteine-type peptidase activity // inferred from electronic annotation 1389660_at BE096098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096098 /DB_XREF=gi:8487029 /DB_XREF=UI-R-C4-alz-h-06-0-UI.s1 /CLONE=UI-R-C4-alz-h-06-0-UI /FEA=EST /CNT=8 /TID=Rn.13801.1 /TIER=Stack /STK=6 /UG=Rn.13801 /UG_TITLE=ESTs BE096098 adhesion molecule with Ig like domain 3 Amigo3 316003 NM_178144 0007155 // cell adhesion // inferred from electronic annotation /// 0007157 // heterophilic cell-cell adhesion // inferred from physical interaction /// 0007399 // nervous system development // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 1389661_at AI599413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599413 /DB_XREF=gi:4608461 /DB_XREF=EST251116 /CLONE=REMEO14 /FEA=EST /CNT=8 /TID=Rn.8172.2 /TIER=Stack /STK=6 /UG=Rn.8172 /LL=89819 /UG_GENE=G10 /UG_TITLE=maternal G10 transcript AI599413 pentatricopeptide repeat domain 1 Ptcd1 304278 NM_001109665 1389662_at AI406290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406290 /DB_XREF=gi:4249794 /DB_XREF=EST234576 /CLONE=RBRDL92 /FEA=EST /CNT=8 /TID=Rn.12652.1 /TIER=Stack /STK=6 /UG=Rn.12652 /UG_TITLE=ESTs AI406290 WNK lysine deficient protein kinase 4 Wnk4 287715 NM_175579 0006350 // transcription // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // not recorded /// 0006811 // ion transport // inferred from sequence or structural similarity /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from electronic annotation /// 0006821 // chloride transport // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from sequence or structural similarity /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0050794 // regulation of cellular process // not recorded /// 0050794 // regulation of cellular process // inferred from sequence or structural similarity /// 0050794 // regulation of cellular process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005923 // tight junction // not recorded /// 0005923 // tight junction // inferred from sequence or structural similarity /// 0005923 // tight junction // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1389663_at BI278423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278423 /DB_XREF=gi:14925252 /DB_XREF=UI-R-CZ0-byg-d-07-0-UI.s1 /CLONE=UI-R-CZ0-byg-d-07-0-UI /FEA=EST /CNT=8 /TID=Rn.27008.1 /TIER=Stack /STK=6 /UG=Rn.27008 /UG_TITLE=ESTs BI278423 neurobeachin-like 2 Nbeal2 316014 XR_085901 /// XR_086328 0005488 // binding // inferred from electronic annotation 1389664_at BM387379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387379 /DB_XREF=gi:18187432 /DB_XREF=UI-R-CN1-cjj-i-15-0-UI.s1 /CLONE=UI-R-CN1-cjj-i-15-0-UI /FEA=EST /CNT=8 /TID=Rn.22965.1 /TIER=Stack /STK=6 /UG=Rn.22965 /UG_TITLE=ESTs BM387379 RNA binding motif protein 15B Rbm15b 315988 XM_001074007 /// XM_236613 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1389665_at BG375619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375619 /DB_XREF=gi:13300091 /DB_XREF=UI-R-CS0-btd-d-09-0-UI.s1 /CLONE=UI-R-CS0-btd-d-09-0-UI /FEA=EST /CNT=8 /TID=Rn.13726.1 /TIER=Stack /STK=6 /UG=Rn.13726 /UG_TITLE=ESTs BG375619 Hyaluronan binding protein 4 Habp4 361196 NM_001079940 0005576 // extracellular region // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 1389666_at AA892855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892855 /DB_XREF=gi:3019734 /DB_XREF=EST196658 /CLONE=RKIAY14 /FEA=EST /CNT=8 /TID=Rn.14796.1 /TIER=Stack /STK=6 /UG=Rn.14796 /UG_TITLE=ESTs, Highly similar to ROM1 MOUSE ROD OUTER SEGMENT MEMBRANE PROTEIN 1 (M.musculus) AA892855 retinal outer segment membrane protein 1 Rom1 309201 NM_001009690 0007155 // cell adhesion // inferred from electronic annotation /// 0007601 // visual perception // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1389667_at AA944552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944552 /DB_XREF=gi:3104468 /DB_XREF=EST200051 /CLONE=REMAK92 /FEA=EST /CNT=8 /TID=Rn.7754.1 /TIER=Stack /STK=6 /UG=Rn.7754 /UG_TITLE=ESTs AA944552 similar to Protein C6orf203 LOC683897 683897 NM_001109448 1389668_at AI408269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408269 /DB_XREF=gi:4251773 /DB_XREF=EST236559 /CLONE=ROVET81 /FEA=EST /CNT=7 /TID=Rn.16268.1 /TIER=Stack /STK=6 /UG=Rn.16268 /UG_TITLE=ESTs AI408269 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae) Spc25 295661 NM_001009654 0007049 // cell cycle // inferred from electronic annotation /// 0007052 // mitotic spindle organization // not recorded /// 0007052 // mitotic spindle organization // inferred from sequence or structural similarity /// 0007052 // mitotic spindle organization // inferred from electronic annotation /// 0007059 // chromosome segregation // not recorded /// 0007059 // chromosome segregation // inferred from sequence or structural similarity /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // not recorded /// 0000777 // condensed chromosome kinetochore // inferred from sequence or structural similarity /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0031262 // Ndc80 complex // not recorded /// 0031262 // Ndc80 complex // inferred from sequence or structural similarity /// 0031262 // Ndc80 complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389669_at BI296532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296532 /DB_XREF=gi:14961048 /DB_XREF=UI-R-CV2-cgs-c-11-0-UI.s1 /CLONE=UI-R-CV2-cgs-c-11-0-UI /FEA=EST /CNT=7 /TID=Rn.66962.1 /TIER=Stack /STK=6 /UG=Rn.66962 /UG_TITLE=ESTs BI296532 1389670_at AI008960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008960 /DB_XREF=gi:4132971 /DB_XREF=EST203411 /CLONE=REMBG17 /FEA=EST /CNT=7 /TID=Rn.6942.1 /TIER=Stack /STK=6 /UG=Rn.6942 /UG_TITLE=ESTs AI008960 homeo box A10 Hoxa10 368057 NM_001129878 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001656 // metanephros development // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001759 // organ induction // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007275 // multicellular organismal development // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // not recorded /// 0010720 // positive regulation of cell development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0032332 // positive regulation of chondrocyte differentiation // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048589 // developmental growth // inferred from electronic annotation /// 0060351 // cartilage development involved in endochondral bone morphogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1389671_at AW252088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252088 /DB_XREF=gi:6595679 /DB_XREF=UI-R-BJ0-aee-a-06-0-UI.s1 /CLONE=UI-R-BJ0-aee-a-06-0-UI /FEA=EST /CNT=7 /TID=Rn.13251.1 /TIER=Stack /STK=6 /UG=Rn.13251 /UG_TITLE=ESTs AW252088 transient receptor potential cation channel, subfamily C, member 2 Trpc2 64573 XM_002725704 /// XM_002728801 0000012 // single strand break repair // inferred from electronic annotation /// 0002121 // inter-male aggressive behavior // inferred from electronic annotation /// 0002121 // inter-male aggressive behavior // not recorded /// 0002124 // territorial aggressive behavior // inferred from electronic annotation /// 0002124 // territorial aggressive behavior // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007340 // acrosome reaction // inferred from electronic annotation /// 0007340 // acrosome reaction // not recorded /// 0008050 // female courtship behavior // inferred from electronic annotation /// 0008050 // female courtship behavior // not recorded /// 0019236 // response to pheromone // inferred from electronic annotation /// 0019236 // response to pheromone // not recorded /// 0048047 // mating behavior, sex discrimination // inferred from electronic annotation /// 0048047 // mating behavior, sex discrimination // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0000139 // Golgi membrane // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032590 // dendrite membrane // inferred from electronic annotation /// 0032590 // dendrite membrane // not recorded 0003684 // damaged DNA binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005516 // calmodulin binding // not recorded /// 0015279 // store-operated calcium channel activity // inferred from electronic annotation /// 0015279 // store-operated calcium channel activity // not recorded /// 0019992 // diacylglycerol binding // inferred from electronic annotation /// 0019992 // diacylglycerol binding // not recorded 1389672_at BI301467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301467 /DB_XREF=gi:14977747 /DB_XREF=UI-R-DN0-cit-g-03-0-UI.s1 /CLONE=UI-R-DN0-cit-g-03-0-UI /FEA=EST /CNT=7 /TID=Rn.16573.1 /TIER=Stack /STK=6 /UG=Rn.16573 /UG_TITLE=ESTs BI301467 UHRF1 binding protein 1-like Uhrf1bp1l 363009 NM_001108753 1389673_at AI549393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549393 /DB_XREF=gi:4466881 /DB_XREF=UI-R-C3-ua-c-05-0-UI.s1 /CLONE=UI-R-C3-ua-c-05-0-UI /FEA=EST /CNT=7 /TID=Rn.30623.1 /TIER=Stack /STK=6 /UG=Rn.30623 /UG_TITLE=ESTs AI549393 1389674_at BI289654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289654 /DB_XREF=gi:14947438 /DB_XREF=UI-R-DK0-cfi-e-10-0-UI.s1 /CLONE=UI-R-DK0-cfi-e-10-0-UI /FEA=EST /CNT=7 /TID=Rn.9537.1 /TIER=Stack /STK=6 /UG=Rn.9537 /UG_TITLE=ESTs BI289654 zinc finger protein 282 Znf282 297065 NM_001106592 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389675_at AW532262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532262 /DB_XREF=gi:7174676 /DB_XREF=UI-R-C4-all-d-03-0-UI.s1 /CLONE=UI-R-C4-all-d-03-0-UI /FEA=EST /CNT=7 /TID=Rn.23324.1 /TIER=Stack /STK=6 /UG=Rn.23324 /UG_TITLE=ESTs AW532262 immediate early response 5-like Ier5l 499772 NM_001025041 1389676_at BI294925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294925 /DB_XREF=gi:14957856 /DB_XREF=UI-R-DK0-ced-g-02-0-UI.s1 /CLONE=UI-R-DK0-ced-g-02-0-UI /FEA=EST /CNT=7 /TID=Rn.34983.1 /TIER=Stack /STK=6 /UG=Rn.34983 /UG_TITLE=ESTs, Weakly similar to T22B7.4.p (Caenorhabditis elegans) (C.elegans) BI294925 coiled-coil domain containing 101 Ccdc101 293488 NM_001114502 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1389677_at BE109624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109624 /DB_XREF=gi:8501729 /DB_XREF=UI-R-BJ1-avq-c-09-0-UI.s1 /CLONE=UI-R-BJ1-avq-c-09-0-UI /FEA=EST /CNT=7 /TID=Rn.9136.1 /TIER=Stack /STK=6 /UG=Rn.9136 /UG_TITLE=ESTs BE109624 Synapse defective 1, Rho GTPase, homolog 1 (C. elegans) Syde1 362842 NM_001191876 /// XM_001077806 /// XM_343173 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 1389678_at BM389496 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389496 /DB_XREF=gi:18189549 /DB_XREF=UI-R-CN1-cjn-n-03-0-UI.s1 /CLONE=UI-R-CN1-cjn-n-03-0-UI /FEA=EST /CNT=7 /TID=Rn.38259.1 /TIER=Stack /STK=6 /UG=Rn.38259 /UG_TITLE=ESTs BM389496 1389679_at AI178923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178923 /DB_XREF=gi:3729561 /DB_XREF=EST222605 /CLONE=RSPBT29 /FEA=EST /CNT=7 /TID=Rn.25041.1 /TIER=Stack /STK=6 /UG=Rn.25041 /UG_TITLE=ESTs AI178923 glucocorticoid induced transcript 1 Glcci1 500026 XM_001055704 /// XM_575380 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded 1389680_at BI291626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291626 /DB_XREF=gi:14951347 /DB_XREF=UI-R-DN0-ciu-h-21-0-UI.s1 /CLONE=UI-R-DN0-ciu-h-21-0-UI /FEA=EST /CNT=7 /TID=Rn.18739.1 /TIER=Stack /STK=6 /UG=Rn.18739 /UG_TITLE=ESTs, Weakly similar to ELL MOUSE RNA POLYMERASE II ELONGATION FACTOR ELL (M.musculus) BI291626 elongation factor RNA polymerase II 2 Ell2 309918 XM_001054852 /// XM_002725905 /// XM_002728986 /// XM_226624 0006368 // RNA elongation from RNA polymerase II promoter // inferred from electronic annotation 0008023 // transcription elongation factor complex // inferred from electronic annotation 0016944 // RNA polymerase II transcription elongation factor activity // inferred from electronic annotation 1389681_at BI296388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296388 /DB_XREF=gi:14960762 /DB_XREF=UI-R-DK0-cez-g-08-0-UI.s1 /CLONE=UI-R-DK0-cez-g-08-0-UI /FEA=EST /CNT=7 /TID=Rn.2144.1 /TIER=Stack /STK=6 /UG=Rn.2144 /UG_TITLE=ESTs, Highly similar to POLIOVIRUS RECEPTOR HOMOLOG PRECURSOR (M.musculus) BI296388 poliovirus receptor-related 2 Pvrl2 308417 NM_001012064 0002860 // positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target // inferred from electronic annotation /// 0002860 // positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target // not recorded /// 0002891 // positive regulation of immunoglobulin mediated immune response // inferred from electronic annotation /// 0002891 // positive regulation of immunoglobulin mediated immune response // not recorded /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // not recorded /// 0007286 // spermatid development // inferred from electronic annotation /// 0007286 // spermatid development // not recorded /// 0019064 // viral envelope fusion with host membrane // inferred from electronic annotation /// 0019064 // viral envelope fusion with host membrane // not recorded /// 0033005 // positive regulation of mast cell activation // inferred from electronic annotation /// 0033005 // positive regulation of mast cell activation // not recorded /// 0042271 // susceptibility to natural killer cell mediated cytotoxicity // inferred from electronic annotation /// 0042271 // susceptibility to natural killer cell mediated cytotoxicity // not recorded /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // not recorded /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // inferred from electronic annotation /// 0046814 // virion attachment, binding of host cell surface coreceptor // inferred from electronic annotation /// 0046814 // virion attachment, binding of host cell surface coreceptor // not recorded /// 0051856 // adhesion to symbiont // inferred from electronic annotation /// 0051856 // adhesion to symbiont // not recorded /// 0060370 // susceptibility to T cell mediated cytotoxicity // inferred from electronic annotation /// 0060370 // susceptibility to T cell mediated cytotoxicity // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0005915 // zonula adherens // inferred from electronic annotation /// 0005915 // zonula adherens // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0050839 // cell adhesion molecule binding // inferred from electronic annotation /// 0050839 // cell adhesion molecule binding // not recorded 1389682_at BF284967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284967 /DB_XREF=gi:11216037 /DB_XREF=EST449558 /CLONE=RGIEY21 /FEA=EST /CNT=7 /TID=Rn.7268.1 /TIER=Stack /STK=6 /UG=Rn.7268 /UG_TITLE=ESTs, Weakly similar to S30817 hypothetical protein YER163c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BF284967 ChaC, cation transport regulator homolog 2 (E. coli) Chac2 360994 NM_001025016 1389683_at AI170768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170768 /DB_XREF=gi:3710808 /DB_XREF=EST216707 /CLONE=RMUBB28 /FEA=EST /CNT=7 /TID=Rn.23991.1 /TIER=Stack /STK=6 /UG=Rn.23991 /UG_TITLE=ESTs AI170768 1389684_at AA850679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850679 /DB_XREF=gi:2938219 /DB_XREF=EST193447 /CLONE=ROVAJ41 /FEA=EST /CNT=7 /TID=Rn.12521.1 /TIER=Stack /STK=6 /UG=Rn.12521 /UG_TITLE=ESTs AA850679 PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae) Prpf39 314171 NM_001108026 0006396 // RNA processing // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0005488 // binding // inferred from electronic annotation 1389685_at AI009613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009613 /DB_XREF=gi:4133076 /DB_XREF=EST204064 /CLONE=RLUBG32 /FEA=EST /CNT=7 /TID=Rn.6640.1 /TIER=Stack /STK=6 /UG=Rn.6640 /UG_TITLE=ESTs AI009613 zinc finger protein 655 Znf655 360764 NM_001008362 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007346 // regulation of mitotic cell cycle // not recorded /// 0007346 // regulation of mitotic cell cycle // inferred from sequence or structural similarity /// 0051318 // G1 phase // not recorded /// 0051318 // G1 phase // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1389686_at BF408898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408898 /DB_XREF=gi:11396873 /DB_XREF=UI-R-BS2-bet-f-06-0-UI.s1 /CLONE=UI-R-BS2-bet-f-06-0-UI /FEA=EST /CNT=7 /TID=Rn.16741.1 /TIER=Stack /STK=6 /UG=Rn.16741 /UG_TITLE=ESTs BF408898 protein kinase, X-linked Prkx 501563 NM_001033963 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1389687_at BI273981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI273981 /DB_XREF=gi:14884473 /DB_XREF=UI-R-CW0-bwb-c-07-0-UI.s1 /CLONE=UI-R-CW0-bwb-c-07-0-UI /FEA=EST /CNT=7 /TID=Rn.23637.1 /TIER=Stack /STK=6 /UG=Rn.23637 /UG_TITLE=ESTs BI273981 1389688_at BM384373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384373 /DB_XREF=gi:18184426 /DB_XREF=UI-R-CN1-cjl-n-18-0-UI.s1 /CLONE=UI-R-CN1-cjl-n-18-0-UI /FEA=EST /CNT=7 /TID=Rn.48282.1 /TIER=Stack /STK=6 /UG=Rn.48282 /UG_TITLE=ESTs BM384373 1389689_at BI276974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276974 /DB_XREF=gi:14922402 /DB_XREF=UI-R-CW0-bxo-f-08-0-UI.s1 /CLONE=UI-R-CW0-bxo-f-08-0-UI /FEA=EST /CNT=7 /TID=Rn.43153.1 /TIER=Stack /STK=6 /UG=Rn.43153 /UG_TITLE=ESTs BI276974 valyl-tRNA synthetase 2, mitochondrial (putative) Vars2 309596 NM_213563 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006438 // valyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004832 // valine-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1389690_at AI233903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233903 /DB_XREF=gi:4135930 /DB_XREF=EST230591 /CLONE=RLUCS55 /FEA=EST /CNT=7 /TID=Rn.12843.1 /TIER=Stack /STK=6 /UG=Rn.12843 /UG_TITLE=ESTs AI233903 similar to RIKEN cDNA 2410146L05 RGD1311103 301100 XR_007793 /// XR_086315 1389691_at AI230862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230862 /DB_XREF=gi:3814749 /DB_XREF=EST227557 /CLONE=REMDC15 /FEA=EST /CNT=7 /TID=Rn.24529.1 /TIER=Stack /STK=6 /UG=Rn.24529 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) AI230862 zinc finger protein 575 Znf575 308430 NM_001107489 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1389692_at BM391905 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391905 /DB_XREF=gi:18191958 /DB_XREF=UI-R-DM1-ckc-b-23-0-UI.s2 /CLONE=UI-R-DM1-ckc-b-23-0-UI /FEA=EST /CNT=7 /TID=Rn.18186.1 /TIER=Stack /STK=6 /UG=Rn.18186 /UG_TITLE=ESTs BM391905 RAB22A, member RAS oncogene family Rab22a 366265 NM_001108966 0006184 // GTP catabolic process // not recorded /// 0006897 // endocytosis // not recorded /// 0006897 // endocytosis // inferred from electronic annotation /// 0007032 // endosome organization // not recorded /// 0007032 // endosome organization // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded 1389693_at AA944526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944526 /DB_XREF=gi:4132419 /DB_XREF=EST200025 /CLONE=REMAK60 /FEA=EST /CNT=7 /TID=Rn.7748.1 /TIER=Stack /STK=6 /UG=Rn.7748 /UG_TITLE=ESTs AA944526 thiosulfate sulfurtransferase (rhodanese)-like domain containing 2 Tstd2 362514 NM_001108663 1389694_at BE111310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111310 /DB_XREF=gi:8503415 /DB_XREF=UI-R-BJ1-ava-c-08-0-UI.s1 /CLONE=UI-R-BJ1-ava-c-08-0-UI /FEA=EST /CNT=7 /TID=Rn.19793.1 /TIER=Stack /STK=6 /UG=Rn.19793 /UG_TITLE=ESTs BE111310 kyphoscoliosis peptidase Ky 315962 NM_001108180 0007517 // muscle organ development // not recorded /// 0007528 // neuromuscular junction development // not recorded 1389695_at AI410976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410976 /DB_XREF=gi:4254480 /DB_XREF=EST239269 /CLONE=RKIEE18 /FEA=EST /CNT=7 /TID=Rn.16181.1 /TIER=Stack /STK=6 /UG=Rn.16181 /UG_TITLE=ESTs AI410976 family with sequence similarity 20, member C Fam20c 304334 NM_001012238 1389696_at BF409820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409820 /DB_XREF=gi:11397795 /DB_XREF=UI-R-CA1-bjr-b-10-0-UI.s1 /CLONE=UI-R-CA1-bjr-b-10-0-UI /FEA=EST /CNT=7 /TID=Rn.62928.1 /TIER=Stack /STK=6 /UG=Rn.62928 /UG_TITLE=ESTs BF409820 1389697_at AW529759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529759 /DB_XREF=gi:7172173 /DB_XREF=UI-R-BU0-amt-a-02-0-UI.s1 /CLONE=UI-R-BU0-amt-a-02-0-UI /FEA=EST /CNT=7 /TID=Rn.45060.1 /TIER=Stack /STK=6 /UG=Rn.45060 /UG_TITLE=ESTs AW529759 1389698_at AI010312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010312 /DB_XREF=gi:4133226 /DB_XREF=EST204763 /CLONE=RLUBW94 /FEA=EST /CNT=7 /TID=Rn.30605.1 /TIER=Stack /STK=6 /UG=Rn.30605 /UG_TITLE=ESTs AI010312 1389699_at AW433598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433598 /DB_XREF=gi:6964905 /DB_XREF=UI-R-BJ0p-afa-d-05-0-UI.s1 /CLONE=UI-R-BJ0p-afa-d-05-0-UI /FEA=EST /CNT=7 /TID=Rn.41878.1 /TIER=Stack /STK=6 /UG=Rn.41878 /UG_TITLE=ESTs AW433598 similar to Probable ATP-dependent RNA helicase DHX34 (DEAH box protein 34) LOC684903 684903 XM_001062397 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1389700_at H31078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31078 /DB_XREF=gi:976500 /DB_XREF=EST104768 /CLONE=RPCAB15 /FEA=EST /CNT=7 /TID=Rn.22653.1 /TIER=Stack /STK=6 /UG=Rn.22653 /UG_TITLE=ESTs H31078 1389701_at AI599419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599419 /DB_XREF=gi:4608467 /DB_XREF=EST251122 /CLONE=REMEO28 /FEA=EST /CNT=7 /TID=Rn.11550.1 /TIER=Stack /STK=6 /UG=Rn.11550 /UG_TITLE=ESTs AI599419 1389702_at AI013041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013041 /DB_XREF=gi:3226873 /DB_XREF=EST207492 /CLONE=RSPBB90 /FEA=EST /CNT=7 /TID=Rn.17919.1 /TIER=Stack /STK=6 /UG=Rn.17919 /UG_TITLE=ESTs AI013041 U-box domain containing 5 Ubox5 296161 NM_001033997 0000209 // protein polyubiquitination // inferred from electronic annotation /// 0000209 // protein polyubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0034450 // ubiquitin-ubiquitin ligase activity // inferred from electronic annotation /// 0034450 // ubiquitin-ubiquitin ligase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1389703_at BI295225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295225 /DB_XREF=gi:14958457 /DB_XREF=UI-R-DK0-cet-c-10-0-UI.s1 /CLONE=UI-R-DK0-cet-c-10-0-UI /FEA=EST /CNT=7 /TID=Rn.24218.1 /TIER=Stack /STK=6 /UG=Rn.24218 /UG_TITLE=ESTs BI295225 zinc finger, ZZ-type with EF hand domain 1 Zzef1 287476 XM_001080236 /// XM_002724514 /// XM_002724515 /// XM_002727781 /// XM_002727782 /// XM_237787 0030071 // regulation of mitotic metaphase/anaphase transition // inferred from electronic annotation 0005680 // anaphase-promoting complex // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1389704_at AA850490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850490 /DB_XREF=gi:2938030 /DB_XREF=EST193257 /CLONE=ROVAG33 /FEA=EST /CNT=7 /TID=Rn.7010.1 /TIER=Stack /STK=6 /UG=Rn.7010 /UG_TITLE=ESTs AA850490 1389705_at AI138061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI138061 /DB_XREF=gi:3638838 /DB_XREF=UI-R-C2p-oi-h-09-0-UI.s1 /CLONE=UI-R-C2p-oi-h-09-0-UI /FEA=EST /CNT=7 /TID=Rn.823.1 /TIER=Stack /STK=6 /UG=Rn.823 /UG_TITLE=ESTs, Moderately similar to JC4761 recombination activating gene 1 inducing protein - mouse (M.musculus) AI138061 recombination activating gene 1 activating protein 1 Rag1ap1 295245 NM_001106445 0006310 // DNA recombination // inferred from electronic annotation /// 0045815 // positive regulation of gene expression, epigenetic // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1389706_at AI007639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI007639 /DB_XREF=gi:3221471 /DB_XREF=EST202090 /CLONE=RBRAS59 /FEA=EST /CNT=7 /TID=Rn.13400.1 /TIER=Stack /STK=6 /UG=Rn.13400 /UG_TITLE=ESTs AI007639 doublecortin-like kinase 1 Dclk1 83825 NM_021584 /// NM_053343 0001764 // neuron migration // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007420 // brain development // not recorded /// 0009615 // response to virus // not recorded /// 0021952 // central nervous system projection neuron axonogenesis // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0048675 // axon extension // not recorded /// 0048813 // dendrite morphogenesis // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1389707_at AW251681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251681 /DB_XREF=gi:6595272 /DB_XREF=UI-R-BJ0-adp-f-06-0-UI.s1 /CLONE=UI-R-BJ0-adp-f-06-0-UI /FEA=EST /CNT=7 /TID=Rn.28306.1 /TIER=Stack /STK=6 /UG=Rn.28306 /UG_TITLE=ESTs AW251681 1389708_at AW142960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142960 /DB_XREF=gi:6162859 /DB_XREF=EST293252 /CLONE=RGIBA47 /FEA=EST /CNT=7 /TID=Rn.15073.1 /TIER=Stack /STK=6 /UG=Rn.15073 /UG_TITLE=ESTs AW142960 ATP binding domain 4 Atpbd4 362191 NM_001014181 1389709_at AI146063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146063 /DB_XREF=gi:3667862 /DB_XREF=UI-R-BT0-qg-g-08-0-UI.s1 /CLONE=UI-R-BT0-qg-g-08-0-UI /FEA=EST /CNT=7 /TID=Rn.24021.1 /TIER=Stack /STK=6 /UG=Rn.24021 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) AI146063 similar to Zinc finger protein 133 LOC499900 499900 NM_001024313 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389710_at BF558393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558393 /DB_XREF=gi:11668123 /DB_XREF=UI-R-A1-es-h-01-0-UI.r1 /CLONE=UI-R-A1-es-h-01-0-UI /FEA=EST /CNT=7 /TID=Rn.40393.1 /TIER=Stack /STK=6 /UG=Rn.40393 /UG_TITLE=ESTs BF558393 Son of sevenless homolog 1 (Drosophila) Sos1 313845 NM_001100716 0006915 // apoptosis // not recorded /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // inferred from mutant phenotype /// 0007265 // Ras protein signal transduction // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0045742 // positive regulation of epidermal growth factor receptor signaling pathway // inferred from expression pattern /// 0048011 // nerve growth factor receptor signaling pathway // inferred from mutant phenotype /// 0050790 // regulation of catalytic activity // not recorded /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005088 // Ras guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0017124 // SH3 domain binding // inferred from physical interaction 1389711_at AI012120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012120 /DB_XREF=gi:4133570 /DB_XREF=EST206571 /CLONE=RPLAT04 /FEA=EST /CNT=7 /TID=Rn.17809.1 /TIER=Stack /STK=6 /UG=Rn.17809 /UG_TITLE=ESTs AI012120 1389712_at BE117335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117335 /DB_XREF=gi:8509440 /DB_XREF=UI-R-BS1-ayn-e-10-0-UI.s1 /CLONE=UI-R-BS1-ayn-e-10-0-UI /FEA=EST /CNT=7 /TID=Rn.35535.1 /TIER=Stack /STK=6 /UG=Rn.35535 /UG_TITLE=ESTs BE117335 early B-cell factor 3 Ebf3 361668 NM_001108506 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389713_at AI602851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602851 /DB_XREF=gi:4612012 /DB_XREF=UI-R-AE0-xm-d-12-0-UI.s1 /CLONE=UI-R-AE0-xm-d-12-0-UI /FEA=EST /CNT=7 /TID=Rn.40344.1 /TIER=Stack /STK=6 /UG=Rn.40344 /UG_TITLE=ESTs AI602851 1389714_at AI103146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103146 /DB_XREF=gi:3707721 /DB_XREF=EST212435 /CLONE=REMBX74 /FEA=EST /CNT=7 /TID=Rn.3226.1 /TIER=Stack /STK=6 /UG=Rn.3226 /UG_TITLE=ESTs, Highly similar to KG3A RAT GLYCOGEN SYNTHASE KINASE-3 ALPHA (R.norvegicus) AI103146 1389715_at BG381499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381499 /DB_XREF=gi:13305971 /DB_XREF=UI-R-CT0-buk-a-08-0-UI.s1 /CLONE=UI-R-CT0-buk-a-08-0-UI /FEA=EST /CNT=7 /TID=Rn.23361.1 /TIER=Stack /STK=6 /UG=Rn.23361 /UG_TITLE=ESTs BG381499 yippee-like 4 (Drosophila) Ypel4 502643 NM_001024369 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 1389716_at BI295883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295883 /DB_XREF=gi:14959775 /DB_XREF=UI-R-DK0-cfb-h-01-0-UI.s1 /CLONE=UI-R-DK0-cfb-h-01-0-UI /FEA=EST /CNT=7 /TID=Rn.37183.1 /TIER=Stack /STK=6 /UG=Rn.37183 /UG_TITLE=ESTs BI295883 similar to Centrosomal protein of 27 kDa (Cep27 protein) LOC691918 691918 XM_001080091 /// XM_002726164 /// XM_002726165 1389717_at AI171467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171467 /DB_XREF=gi:3711507 /DB_XREF=EST217429 /CLONE=RMUBL32 /FEA=EST /CNT=7 /TID=Rn.3284.1 /TIER=Stack /STK=6 /UG=Rn.3284 /UG_TITLE=ESTs AI171467 family with sequence similarity 175, member B Fam175b 293570 NM_001106307 0070552 // BRISC complex // not recorded 0005515 // protein binding // not recorded /// 0031593 // polyubiquitin binding // not recorded 1389718_at AA956417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956417 /DB_XREF=gi:4238891 /DB_XREF=UI-R-E1-fj-f-05-0-UI.s1 /CLONE=UI-R-E1-fj-f-05-0-UI /FEA=EST /CNT=7 /TID=Rn.23170.1 /TIER=Stack /STK=6 /UG=Rn.23170 /UG_TITLE=ESTs AA956417 1389719_at BI287001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287001 /DB_XREF=gi:14942182 /DB_XREF=UI-R-CT0s-can-f-12-0-UI.s1 /CLONE=UI-R-CT0s-can-f-12-0-UI /FEA=EST /CNT=7 /TID=Rn.38236.1 /TIER=Stack /STK=6 /UG=Rn.38236 /UG_TITLE=ESTs BI287001 ash2 (absent, small, or homeotic)-like (Drosophila) Ash2l 290829 NM_001106089 0008284 // positive regulation of cell proliferation // not recorded /// 0043627 // response to estrogen stimulus // not recorded /// 0051568 // histone H3-K4 methylation // not recorded 0005634 // nucleus // not recorded /// 0035097 // histone methyltransferase complex // not recorded /// 0071339 // MLL1 complex // not recorded 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0042800 // histone methyltransferase activity (H3-K4 specific) // not recorded 1389720_at BI274428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274428 /DB_XREF=gi:14885332 /DB_XREF=UI-R-CW0-bwi-g-09-0-UI.s1 /CLONE=UI-R-CW0-bwi-g-09-0-UI /FEA=EST /CNT=7 /TID=Rn.28849.1 /TIER=Stack /STK=6 /UG=Rn.28849 /UG_TITLE=ESTs BI274428 1389721_at BI285940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285940 /DB_XREF=gi:14940093 /DB_XREF=UI-R-CX0s-ccp-f-01-0-UI.s1 /CLONE=UI-R-CX0s-ccp-f-01-0-UI /FEA=EST /CNT=7 /TID=Rn.32724.1 /TIER=Stack /STK=6 /UG=Rn.32724 /UG_TITLE=ESTs BI285940 1389722_at BF408457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408457 /DB_XREF=gi:11396432 /DB_XREF=UI-R-BJ2-brc-h-12-0-UI.s1 /CLONE=UI-R-BJ2-brc-h-12-0-UI /FEA=EST /CNT=7 /TID=Rn.28874.1 /TIER=Stack /STK=6 /UG=Rn.28874 /UG_TITLE=ESTs BF408457 1389723_at AI172265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172265 /DB_XREF=gi:3712305 /DB_XREF=EST218266 /CLONE=RMUBX12 /FEA=EST /CNT=7 /TID=Rn.8917.1 /TIER=Stack /STK=6 /UG=Rn.8917 /UG_TITLE=ESTs AI172265 phosphoinositide-3-kinase, regulatory subunit 4 Pik3r4 363131 NM_001108777 0006468 // protein phosphorylation // inferred from electronic annotation 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1389724_at BI274507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274507 /DB_XREF=gi:14885479 /DB_XREF=UI-R-CW0-bwj-f-08-0-UI.s1 /CLONE=UI-R-CW0-bwj-f-08-0-UI /FEA=EST /CNT=7 /TID=Rn.2152.1 /TIER=Stack /STK=6 /UG=Rn.2152 /UG_TITLE=ESTs BI274507 dolichyl pyrophosphate phosphatase 1 Dolpp1 296624 NM_001106567 0006487 // protein N-linked glycosylation // not recorded 0016020 // membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0047874 // dolichyldiphosphatase activity // not recorded 1389725_at BM390364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390364 /DB_XREF=gi:18190422 /DB_XREF=UI-R-CN1-cjq-d-19-0-UI.s1 /CLONE=UI-R-CN1-cjq-d-19-0-UI /FEA=EST /CNT=7 /TID=Rn.8313.1 /TIER=Stack /STK=6 /UG=Rn.8313 /UG_TITLE=ESTs, Weakly similar to JC5567 lamin B receptor - rat (R.norvegicus) BM390364 transmembrane 7 superfamily member 2 Tm7sf2 293688 NM_001013071 0005789 // endoplasmic reticulum membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0050613 // delta14-sterol reductase activity // not recorded 1389726_at AW531735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531735 /DB_XREF=gi:7174149 /DB_XREF=UI-R-C4-alk-e-03-0-UI.s1 /CLONE=UI-R-C4-alk-e-03-0-UI /FEA=EST /CNT=7 /TID=Rn.7895.1 /TIER=Stack /STK=6 /UG=Rn.7895 /UG_TITLE=ESTs AW531735 1389727_at BE100678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100678 /DB_XREF=gi:8492575 /DB_XREF=UI-R-BJ1-atu-b-06-0-UI.s1 /CLONE=UI-R-BJ1-atu-b-06-0-UI /FEA=EST /CNT=7 /TID=Rn.18919.1 /TIER=Stack /STK=6 /UG=Rn.18919 /UG_TITLE=ESTs BE100678 leucine-rich repeat-containing 10 Lrrc10 314848 NM_001108096 0005634 // nucleus // not recorded /// 0005739 // mitochondrion // not recorded /// 0005856 // cytoskeleton // not recorded /// 0030016 // myofibril // not recorded 0005515 // protein binding // inferred from electronic annotation 1389728_at BE104098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104098 /DB_XREF=gi:8496198 /DB_XREF=UI-R-BX0-ark-g-01-0-UI.s1 /CLONE=UI-R-BX0-ark-g-01-0-UI /FEA=EST /CNT=7 /TID=Rn.45546.1 /TIER=Stack /STK=6 /UG=Rn.45546 /UG_TITLE=ESTs, Highly similar to MEI2 MOUSE HOMEOBOX PROTEIN MEIS2 (M.musculus) BE104098 Meis homeobox 2 Meis2 311311 NM_001107758 0001654 // eye development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0031016 // pancreas development // inferred from expression pattern /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0051789 // response to protein stimulus // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1389729_at AI408907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408907 /DB_XREF=gi:4252411 /DB_XREF=EST237198 /CLONE=ROVES06 /FEA=EST /CNT=7 /TID=Rn.12933.1 /TIER=Stack /STK=6 /UG=Rn.12933 /UG_TITLE=ESTs AI408907 Rab interacting lysosomal protein-like 2 Rilpl2 288652 NM_001004205 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0042802 // identical protein binding // not recorded 1389730_at AI176502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176502 /DB_XREF=gi:3727140 /DB_XREF=EST220087 /CLONE=ROVBS69 /FEA=EST /CNT=6 /TID=Rn.20365.1 /TIER=Stack /STK=6 /UG=Rn.20365 /UG_TITLE=ESTs AI176502 1389731_at BF405946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405946 /DB_XREF=gi:11393921 /DB_XREF=UI-R-CA1-bii-h-04-0-UI.s1 /CLONE=UI-R-CA1-bii-h-04-0-UI /FEA=EST /CNT=6 /TID=Rn.62990.1 /TIER=Stack /STK=6 /UG=Rn.62990 /UG_TITLE=ESTs BF405946 1389732_at BM386323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386323 /DB_XREF=gi:18186376 /DB_XREF=UI-R-CN1-cjf-j-21-0-UI.s1 /CLONE=UI-R-CN1-cjf-j-21-0-UI /FEA=EST /CNT=6 /TID=Rn.1826.1 /TIER=Stack /STK=6 /UG=Rn.1826 /UG_TITLE=ESTs BM386323 damage-regulated autophagy modulator Dram 679937 NM_001173427 /// XM_001055011 /// XM_002726892 1389733_at BM384125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384125 /DB_XREF=gi:18184178 /DB_XREF=UI-R-DZ0-cks-j-15-0-UI.s1 /CLONE=UI-R-DZ0-cks-j-15-0-UI /FEA=EST /CNT=6 /TID=Rn.44873.1 /TIER=Stack /STK=6 /UG=Rn.44873 /UG_TITLE=ESTs, Moderately similar to JC5224 methionine--tRNA ligase (H.sapiens) BM384125 methionine-tRNA synthetase Mars 299851 NM_001127659 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006431 // methionyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004825 // methionine-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1389734_x_at BI282965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282965 /DB_XREF=gi:14934252 /DB_XREF=UI-R-CW0s-ccf-d-08-0-UI.s1 /CLONE=UI-R-CW0s-ccf-d-08-0-UI /FEA=EST /CNT=6 /TID=Rn.40492.2 /TIER=Stack /STK=6 /UG=Rn.40492 /UG_TITLE=Rattus norvegicus MHC class I RT1.E protein mRNA, complete cds, haplotype u BI282965 RT1 class I, locus T24, gene 4 RT1-T24-4 414784 NM_001008826 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 1389735_at BE107296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107296 /DB_XREF=gi:8499401 /DB_XREF=UI-R-BS1-ays-b-05-0-UI.s1 /CLONE=UI-R-BS1-ays-b-05-0-UI /FEA=EST /CNT=6 /TID=Rn.51151.1 /TIER=Stack /STK=6 /UG=Rn.51151 /UG_TITLE=ESTs BE107296 Ribosomal protein S6 kinase polypeptide 6 Rps6ka6 317203 NM_001191721 /// XM_001061436 /// XM_228473 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded 1389736_at BM392358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392358 /DB_XREF=gi:18192411 /DB_XREF=UI-R-DO1-ckp-n-16-0-UI.s1 /CLONE=UI-R-DO1-ckp-n-16-0-UI /FEA=EST /CNT=6 /TID=Rn.15326.1 /TIER=Stack /STK=6 /UG=Rn.15326 /UG_TITLE=ESTs BM392358 1389737_at BI295980 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295980 /DB_XREF=gi:14959967 /DB_XREF=UI-R-DK0-cfd-a-06-0-UI.s1 /CLONE=UI-R-DK0-cfd-a-06-0-UI /FEA=EST /CNT=6 /TID=Rn.27152.1 /TIER=Stack /STK=6 /UG=Rn.27152 /UG_TITLE=ESTs, Highly similar to dystrobrevin (M.musculus) BI295980 dystrobrevin alpha Dtna 307548 XR_085665 /// XR_086076 0005737 // cytoplasm // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0031234 // extrinsic to internal side of plasma membrane // inferred from direct assay /// 0042383 // sarcolemma // inferred from direct assay /// 0042995 // cell projection // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction 1389738_at AA848420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848420 /DB_XREF=gi:4131639 /DB_XREF=EST191180 /CLONE=RKIAC25 /FEA=EST /CNT=6 /TID=Rn.6357.1 /TIER=Stack /STK=6 /UG=Rn.6357 /UG_TITLE=ESTs, Highly similar to UNG MOUSE URACIL-DNA GLYCOSYLASE PRECURSOR (M.musculus) AA848420 uracil-DNA glycosylase Ung 304577 NM_001013124 0006281 // DNA repair // traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006284 // base-excision repair // inferred from direct assay /// 0006284 // base-excision repair // traceable author statement /// 0006284 // base-excision repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0016446 // somatic hypermutation of immunoglobulin genes // not recorded /// 0016447 // somatic recombination of immunoglobulin gene segments // not recorded /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded 0004844 // uracil DNA N-glycosylase activity // inferred from direct assay /// 0004844 // uracil DNA N-glycosylase activity // not recorded /// 0004844 // uracil DNA N-glycosylase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0016799 // hydrolase activity, hydrolyzing N-glycosyl compounds // inferred from electronic annotation 1389739_at AA800025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800025 /DB_XREF=gi:2862980 /DB_XREF=EST189522 /CLONE=RHEAI51 /FEA=EST /CNT=6 /TID=Rn.6271.1 /TIER=Stack /STK=6 /UG=Rn.6271 /UG_TITLE=ESTs AA800025 neuralized homolog 2 (Drosophila) Neurl2 311633 NM_001107802 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030239 // myofibril assembly // not recorded /// 0030239 // myofibril assembly // inferred from electronic annotation /// 0045214 // sarcomere organization // inferred from electronic annotation /// 0045214 // sarcomere organization // not recorded 0005927 // muscle tendon junction // inferred from electronic annotation /// 0005927 // muscle tendon junction // not recorded /// 0030891 // VCB complex // inferred from electronic annotation /// 0030891 // VCB complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389740_at BI296432 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296432 /DB_XREF=gi:14960850 /DB_XREF=UI-R-CV2-cgr-b-05-0-UI.s1 /CLONE=UI-R-CV2-cgr-b-05-0-UI /FEA=EST /CNT=6 /TID=Rn.41413.1 /TIER=Stack /STK=6 /UG=Rn.41413 /UG_TITLE=ESTs BI296432 1389741_at BE111727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111727 /DB_XREF=gi:8503832 /DB_XREF=UI-R-BJ1-avx-b-02-0-UI.s1 /CLONE=UI-R-BJ1-avx-b-02-0-UI /FEA=EST /CNT=6 /TID=Rn.37919.1 /TIER=Stack /STK=6 /UG=Rn.37919 /UG_TITLE=ESTs BE111727 LAG1 homolog, ceramide synthase 4 Lass4 304208 NM_001107117 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0030148 // sphingolipid biosynthetic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0046513 // ceramide biosynthetic process // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0050291 // sphingosine N-acyltransferase activity // not recorded 1389742_at AW520758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520758 /DB_XREF=gi:7163136 /DB_XREF=UI-R-BJ0p-agh-b-09-0-UI.s1 /CLONE=UI-R-BJ0p-agh-b-09-0-UI /FEA=EST /CNT=6 /TID=Rn.19846.1 /TIER=Stack /STK=6 /UG=Rn.19846 /UG_TITLE=ESTs AW520758 1389743_at BF403162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403162 /DB_XREF=gi:11391137 /DB_XREF=UI-R-CA0-bhs-d-05-0-UI.s1 /CLONE=UI-R-CA0-bhs-d-05-0-UI /FEA=EST /CNT=6 /TID=Rn.53742.1 /TIER=Stack /STK=6 /UG=Rn.53742 /UG_TITLE=ESTs BF403162 1389744_at AW527194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527194 /DB_XREF=gi:7169608 /DB_XREF=UI-R-BO1-ajm-e-12-0-UI.s1 /CLONE=UI-R-BO1-ajm-e-12-0-UI /FEA=EST /CNT=6 /TID=Rn.43161.1 /TIER=Stack /STK=6 /UG=Rn.43161 /UG_TITLE=ESTs AW527194 1389745_at BI290604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290604 /DB_XREF=gi:14949327 /DB_XREF=UI-R-DK0-cfx-b-11-0-UI.s1 /CLONE=UI-R-DK0-cfx-b-11-0-UI /FEA=EST /CNT=6 /TID=Rn.15248.1 /TIER=Stack /STK=6 /UG=Rn.15248 /UG_TITLE=ESTs BI290604 1389746_at BM386322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386322 /DB_XREF=gi:18186375 /DB_XREF=UI-R-CN1-cjf-j-19-0-UI.s1 /CLONE=UI-R-CN1-cjf-j-19-0-UI /FEA=EST /CNT=6 /TID=Rn.9000.1 /TIER=Stack /STK=6 /UG=Rn.9000 /UG_TITLE=ESTs, Weakly similar to G02270 alpha-N-acetylglucosaminidase (H.sapiens) BM386322 similar to Naglu RGD1564228 360630 XM_001081442 /// XM_002727815 1389747_at BF413245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413245 /DB_XREF=gi:11401234 /DB_XREF=UI-R-BT1-bny-e-09-0-UI.s1 /CLONE=UI-R-BT1-bny-e-09-0-UI /FEA=EST /CNT=6 /TID=Rn.53046.1 /TIER=Stack /STK=6 /UG=Rn.53046 /UG_TITLE=ESTs BF413245 solute carrier family 26, member 8 Slc26a8 309646 NM_001107614 0006821 // chloride transport // not recorded /// 0008272 // sulfate transport // not recorded /// 0019532 // oxalate transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005254 // chloride channel activity // not recorded /// 0005515 // protein binding // not recorded /// 0015116 // sulfate transmembrane transporter activity // not recorded /// 0019531 // oxalate transmembrane transporter activity // not recorded /// 0047485 // protein N-terminus binding // not recorded 1389748_at BE118122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118122 /DB_XREF=gi:8510227 /DB_XREF=UI-R-BS1-azn-h-08-0-UI.s1 /CLONE=UI-R-BS1-azn-h-08-0-UI /FEA=EST /CNT=6 /TID=Rn.18844.1 /TIER=Stack /STK=6 /UG=Rn.18844 /UG_TITLE=ESTs BE118122 1389749_at BI291303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291303 /DB_XREF=gi:14950716 /DB_XREF=UI-R-CV2-cgo-b-09-0-UI.s1 /CLONE=UI-R-CV2-cgo-b-09-0-UI /FEA=EST /CNT=6 /TID=Rn.66969.1 /TIER=Stack /STK=6 /UG=Rn.66969 /UG_TITLE=ESTs, Weakly similar to TLM PROTEIN (M.musculus) BI291303 1389750_at AW251641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251641 /DB_XREF=gi:6595232 /DB_XREF=UI-R-BJ0-adp-b-07-0-UI.s1 /CLONE=UI-R-BJ0-adp-b-07-0-UI /FEA=EST /CNT=6 /TID=Rn.41477.1 /TIER=Stack /STK=6 /UG=Rn.41477 /UG_TITLE=ESTs AW251641 coiled-coil and C2 domain containing 1A Cc2d1a 288908 NM_001013869 0006350 // transcription // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded 1389751_at BG378636 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378636 /DB_XREF=gi:13303108 /DB_XREF=UI-R-CV1-bvr-g-09-0-UI.s1 /CLONE=UI-R-CV1-bvr-g-09-0-UI /FEA=EST /CNT=6 /TID=Rn.73219.1 /TIER=Stack /STK=6 /UG=Rn.73219 /UG_TITLE=ESTs BG378636 1389752_at BE109861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109861 /DB_XREF=gi:8501966 /DB_XREF=UI-R-CA0-axi-c-02-0-UI.s1 /CLONE=UI-R-CA0-axi-c-02-0-UI /FEA=EST /CNT=6 /TID=Rn.46999.1 /TIER=Stack /STK=6 /UG=Rn.46999 /UG_TITLE=ESTs BE109861 sortilin-related VPS10 domain containing receptor 3 Sorcs3 294043 NM_001106367 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1389753_at AA892305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892305 /DB_XREF=gi:3019184 /DB_XREF=EST196108 /CLONE=RKIAO82 /FEA=EST /CNT=6 /TID=Rn.17102.1 /TIER=Stack /STK=6 /UG=Rn.17102 /UG_TITLE=ESTs AA892305 brain protein 16 Brp16 315094 NM_001007707 0005488 // binding // inferred from electronic annotation 1389754_at AI555295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555295 /DB_XREF=gi:4487658 /DB_XREF=UI-R-C2p-qq-d-04-0-UI.s1 /CLONE=UI-R-C2p-qq-d-04-0-UI /FEA=EST /CNT=6 /TID=Rn.38015.1 /TIER=Stack /STK=6 /UG=Rn.38015 /UG_TITLE=ESTs AI555295 1389755_at BM391858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391858 /DB_XREF=gi:18191911 /DB_XREF=UI-R-DO1-cmk-j-06-0-UI.s1 /CLONE=UI-R-DO1-cmk-j-06-0-UI /FEA=EST /CNT=6 /TID=Rn.24191.1 /TIER=Stack /STK=6 /UG=Rn.24191 /UG_TITLE=ESTs, Weakly similar to T34558 hypothetical protein DKFZp434H2450.1 (H.sapiens) BM391858 cell division cycle associated 7 like Cdca7l 619566 NM_001034953 0006350 // transcription // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 1389756_at BM390710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390710 /DB_XREF=gi:18190763 /DB_XREF=UI-R-CN1-cjr-d-11-0-UI.s1 /CLONE=UI-R-CN1-cjr-d-11-0-UI /FEA=EST /CNT=6 /TID=Rn.28232.1 /TIER=Stack /STK=6 /UG=Rn.28232 /UG_TITLE=ESTs, Weakly similar to PUTATIVE SERINETHREONINE-PROTEIN KINASE EMK (M.musculus) BM390710 maternal embryonic leucine zipper kinase Melk 362510 NM_001108662 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1389757_at AI011481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011481 /DB_XREF=gi:3225313 /DB_XREF=EST205932 /CLONE=ROVAV51 /FEA=EST /CNT=6 /TID=Rn.13452.1 /TIER=Stack /STK=6 /UG=Rn.13452 /UG_TITLE=ESTs AI011481 similar to acetyl-coA dehydrogenase -related (111.6 kD) (5G231) RGD1310159 304500 NM_001134537 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1389758_at AA946332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946332 /DB_XREF=gi:3106248 /DB_XREF=EST201831 /CLONE=RLUBD86 /FEA=EST /CNT=6 /TID=Rn.8027.1 /TIER=Stack /STK=6 /UG=Rn.8027 /UG_TITLE=ESTs AA946332 transcriptional adaptor 2 (ADA2 homolog, yeast)-like Tada2l 360581 NM_001012141 0006350 // transcription // inferred from electronic annotation /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0043966 // histone H3 acetylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0000125 // PCAF complex // inferred from electronic annotation /// 0000125 // PCAF complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1389759_at AW433901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433901 /DB_XREF=gi:6965208 /DB_XREF=UI-R-BJ0p-afm-h-09-0-UI.s1 /CLONE=UI-R-BJ0p-afm-h-09-0-UI /FEA=EST /CNT=6 /TID=Rn.23757.1 /TIER=Stack /STK=6 /UG=Rn.23757 /UG_TITLE=ESTs AW433901 Cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila) Celsr1 300128 XM_001070474 /// XM_001078424 0001736 // establishment of planar polarity // inferred from electronic annotation /// 0001843 // neural tube closure // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0042249 // establishment of planar polarity of embryonic epithelium // inferred from electronic annotation /// 0042249 // establishment of planar polarity of embryonic epithelium // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0045176 // apical protein localization // inferred from electronic annotation /// 0045176 // apical protein localization // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1389760_at AA858786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858786 /DB_XREF=gi:4228979 /DB_XREF=UI-R-A0-bn-e-02-0-UI.s1 /CLONE=UI-R-A0-bn-e-02-0-UI /FEA=EST /CNT=6 /TID=Rn.16897.1 /TIER=Stack /STK=6 /UG=Rn.16897 /UG_TITLE=ESTs AA858786 polycomb group ring finger 6 Pcgf6 309457 NM_001013154 0006350 // transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389761_at BI297776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297776 /DB_XREF=gi:14974056 /DB_XREF=UI-R-CV2-cha-e-07-0-UI.s1 /CLONE=UI-R-CV2-cha-e-07-0-UI /FEA=EST /CNT=6 /TID=Rn.67006.1 /TIER=Stack /STK=6 /UG=Rn.67006 /UG_TITLE=ESTs BI297776 1389762_at BI291805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291805 /DB_XREF=gi:14951706 /DB_XREF=UI-R-DN0-cit-h-02-0-UI.s1 /CLONE=UI-R-DN0-cit-h-02-0-UI /FEA=EST /CNT=6 /TID=Rn.32765.1 /TIER=Stack /STK=6 /UG=Rn.32765 /UG_TITLE=ESTs, Weakly similar to ZAN_HUMAN ZONADHESIN (H.sapiens) BI291805 Fc fragment of IgG binding protein Fcgbp 100303643 NM_001164657 1389763_at BF397229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397229 /DB_XREF=gi:11382212 /DB_XREF=UI-R-BS2-bej-h-08-0-UI.s1 /CLONE=UI-R-BS2-bej-h-08-0-UI /FEA=EST /CNT=6 /TID=Rn.11817.1 /TIER=Stack /STK=6 /UG=Rn.11817 /UG_TITLE=ESTs BF397229 1389764_at BG377235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377235 /DB_XREF=gi:13301707 /DB_XREF=UI-R-CU0-bux-a-11-0-UI.s1 /CLONE=UI-R-CU0-bux-a-11-0-UI /FEA=EST /CNT=6 /TID=Rn.22845.1 /TIER=Stack /STK=6 /UG=Rn.22845 /UG_TITLE=ESTs BG377235 DNA methyltransferase 1-associated protein 1 Dmap1 298447 NM_001015006 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0043967 // histone H4 acetylation // not recorded /// 0043968 // histone H2A acetylation // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005657 // replication fork // not recorded /// 0035267 // NuA4 histone acetyltransferase complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1389765_at BI276730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276730 /DB_XREF=gi:14921909 /DB_XREF=UI-R-CX0-bxj-g-07-0-UI.s1 /CLONE=UI-R-CX0-bxj-g-07-0-UI /FEA=EST /CNT=6 /TID=Rn.19087.1 /TIER=Stack /STK=6 /UG=Rn.19087 /UG_TITLE=ESTs, Weakly similar to GBLP_HUMAN GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT-LIKE PROTEIN 12.3 (R.norvegicus) BI276730 notchless homolog 1 (Drosophila) Nle1 303372 NM_001127534 0001826 // inner cell mass cell differentiation // inferred from electronic annotation /// 0001826 // inner cell mass cell differentiation // not recorded /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007219 // Notch signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 1389766_at AA925385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925385 /DB_XREF=gi:4236576 /DB_XREF=UI-R-A1-ek-a-08-0-UI.s1 /CLONE=UI-R-A1-ek-a-08-0-UI /FEA=EST /CNT=6 /TID=Rn.23075.1 /TIER=Stack /STK=6 /UG=Rn.23075 /UG_TITLE=ESTs AA925385 hypothetical LOC292874 RGD1309036 292874 NM_001106255 1389767_at BE115349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115349 /DB_XREF=gi:8507454 /DB_XREF=UI-R-BJ1-avr-c-10-0-UI.s1 /CLONE=UI-R-BJ1-avr-c-10-0-UI /FEA=EST /CNT=6 /TID=Rn.34400.1 /TIER=Stack /STK=6 /UG=Rn.34400 /UG_TITLE=ESTs BE115349 similar to hypothetical protein FLJ31364 RGD1304924 302982 NM_001129775 0006259 // DNA metabolic process // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1389768_at BI296720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296720 /DB_XREF=gi:14961429 /DB_XREF=UI-R-CV2-cgv-e-08-0-UI.s1 /CLONE=UI-R-CV2-cgv-e-08-0-UI /FEA=EST /CNT=6 /TID=Rn.66272.1 /TIER=Stack /STK=6 /UG=Rn.66272 /UG_TITLE=ESTs BI296720 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1389769_at BI285697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285697 /DB_XREF=gi:14939604 /DB_XREF=UI-R-CT0s-cas-e-03-0-UI.s1 /CLONE=UI-R-CT0s-cas-e-03-0-UI /FEA=EST /CNT=6 /TID=Rn.20290.1 /TIER=Stack /STK=6 /UG=Rn.20290 /UG_TITLE=ESTs, Moderately similar to T08758 hypothetical protein DKFZp586J0619.1 (H.sapiens) BI285697 KIAA1440-like LOC100365889 100365889 XM_002724782 1389770_at BF405468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405468 /DB_XREF=gi:11393443 /DB_XREF=UI-R-CA1-bix-k-13-0-UI.s1 /CLONE=UI-R-CA1-bix-k-13-0-UI /FEA=EST /CNT=6 /TID=Rn.61450.1 /TIER=Stack /STK=6 /UG=Rn.61450 /UG_TITLE=ESTs BF405468 tubulin tyrosine ligase-like family, member 9 Ttll9 311548 NM_001014051 0006464 // protein modification process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0005932 // microtubule basal body // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004835 // tubulin-tyrosine ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1389771_at AI013885 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013885 /DB_XREF=gi:4133932 /DB_XREF=EST208560 /CLONE=RSPBZ08 /FEA=EST /CNT=6 /TID=Rn.6634.1 /TIER=Stack /STK=6 /UG=Rn.6634 /UG_TITLE=ESTs AI013885 zinc finger protein 853 Zfp853 288485 XM_002724787 /// XM_221915 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1389772_at AI575785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575785 /DB_XREF=gi:4560161 /DB_XREF=UI-R-G0-ue-g-05-0-UI.s1 /CLONE=UI-R-G0-ue-g-05-0-UI /FEA=EST /CNT=6 /TID=Rn.48930.1 /TIER=Stack /STK=6 /UG=Rn.48930 /UG_TITLE=ESTs AI575785 1389773_at BI300498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300498 /DB_XREF=gi:14976778 /DB_XREF=UI-R-CV2-cif-f-07-0-UI.s1 /CLONE=UI-R-CV2-cif-f-07-0-UI /FEA=EST /CNT=6 /TID=Rn.15117.1 /TIER=Stack /STK=6 /UG=Rn.15117 /UG_TITLE=ESTs, Weakly similar to S100 calcium-binding protein A9 (calgranulin B); intracellular calcium-binding protein (MRP14) (Rattus norvegicus) (R.norvegicus) BI300498 S100 calcium binding protein A7A S100a7a 685479 NM_001109471 0005737 // cytoplasm // not recorded 0005509 // calcium ion binding // inferred from electronic annotation 1389774_at AI008371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008371 /DB_XREF=gi:3222203 /DB_XREF=EST202822 /CLONE=REMAW45 /FEA=EST /CNT=6 /TID=Rn.6474.1 /TIER=Stack /STK=6 /UG=Rn.6474 /UG_TITLE=ESTs AI008371 zinc finger protein 23 (KOX 16) Znf23 307839 NM_001107428 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389775_at AI412304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412304 /DB_XREF=gi:4255808 /DB_XREF=EST240602 /CLONE=RBRDV53 /FEA=EST /CNT=6 /TID=Rn.41308.1 /TIER=Stack /STK=6 /UG=Rn.41308 /UG_TITLE=ESTs AI412304 1389776_at BE105589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105589 /DB_XREF=gi:8497691 /DB_XREF=UI-R-BX0-ash-f-06-0-UI.s1 /CLONE=UI-R-BX0-ash-f-06-0-UI /FEA=EST /CNT=6 /TID=Rn.23584.1 /TIER=Stack /STK=6 /UG=Rn.23584 /UG_TITLE=ESTs BE105589 1389777_at BF403405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403405 /DB_XREF=gi:11391342 /DB_XREF=UI-R-CA1-biy-m-12-0-UI.s1 /CLONE=UI-R-CA1-biy-m-12-0-UI /FEA=EST /CNT=6 /TID=Rn.40643.1 /TIER=Stack /STK=6 /UG=Rn.40643 /UG_TITLE=ESTs, Weakly similar to T08734 hypothetical protein DKFZp566F0546.1 (H.sapiens) BF403405 RIB43A domain with coiled-coils 1 Ribc1 317431 NM_001007715 1389778_a_at AI233115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233115 /DB_XREF=gi:3816995 /DB_XREF=EST229803 /CLONE=RKICK96 /FEA=EST /CNT=6 /TID=Rn.37427.2 /TIER=Stack /STK=6 /UG=Rn.37427 /LL=25562 /UG_GENE=Tceb3 /UG_TITLE=RNA polymerase II transcription factor elongin subunit A (110 kDa) AI233115 transcription elongation factor B (SIII), polypeptide 3 Tceb3 25562 NM_017103 0006350 // transcription // inferred from electronic annotation /// 0006354 // RNA elongation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006368 // RNA elongation from RNA polymerase II promoter // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0008023 // transcription elongation factor complex // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // traceable author statement /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016944 // RNA polymerase II transcription elongation factor activity // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation 1389779_at AA800626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800626 /DB_XREF=gi:4131521 /DB_XREF=EST190123 /CLONE=RLUAB78 /FEA=EST /CNT=6 /TID=Rn.6614.1 /TIER=Stack /STK=6 /UG=Rn.6614 /UG_TITLE=ESTs AA800626 SH2 domain containing 4A Sh2d4a 306376 NM_001012048 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389780_at AI009783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009783 /DB_XREF=gi:3223615 /DB_XREF=EST204234 /CLONE=RLUBO40 /FEA=EST /CNT=6 /TID=Rn.7556.1 /TIER=Stack /STK=6 /UG=Rn.7556 /UG_TITLE=ESTs AI009783 tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) Tfpi 29436 NM_001177321 /// NM_017200 0007596 // blood coagulation // inferred from electronic annotation /// 0007598 // blood coagulation, extrinsic pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005886 // plasma membrane // not recorded 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // traceable author statement /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1389781_at AI412625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412625 /DB_XREF=gi:4256129 /DB_XREF=EST240924 /CLONE=RBRDL14 /FEA=EST /CNT=6 /TID=Rn.13823.1 /TIER=Stack /STK=6 /UG=Rn.13823 /UG_TITLE=ESTs AI412625 ELMO/CED-12 domain containing 1 Elmod1 315670 NM_001191579 /// XM_002727060 /// XM_002729923 0006909 // phagocytosis // inferred from electronic annotation 0005856 // cytoskeleton // inferred from electronic annotation 1389782_at AI408993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408993 /DB_XREF=gi:4252497 /DB_XREF=EST237284 /CLONE=RKIEU96 /FEA=EST /CNT=6 /TID=Rn.3681.1 /TIER=Stack /STK=6 /UG=Rn.3681 /UG_TITLE=ESTs AI408993 similar to RIKEN cDNA 2010107G23 RGD1305587 294499 NM_001127452 0005515 // protein binding // not recorded 1389783_s_at BI280865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280865 /DB_XREF=gi:14930052 /DB_XREF=UI-R-DC0-bzp-a-11-0-UI.s1 /CLONE=UI-R-DC0-bzp-a-11-0-UI /FEA=EST /CNT=6 /TID=Rn.72236.1 /TIER=Stack /STK=6 /UG=Rn.72236 /UG_TITLE=ESTs BI280865 Fc fragment of IgG binding protein /// similar to Fc fragment of IgG binding protein; IgG Fc binding protein Fcgbp /// RGD1311906 100303643 /// 292746 NM_001164656 /// NM_001164657 1389784_at AI177507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177507 /DB_XREF=gi:3728145 /DB_XREF=EST221139 /CLONE=RPLCA86 /FEA=EST /CNT=6 /TID=Rn.33966.1 /TIER=Stack /STK=6 /UG=Rn.33966 /UG_TITLE=ESTs AI177507 pogo transposable element with ZNF domain Pogz 310658 NM_001107693 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1389785_at AA892933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892933 /DB_XREF=gi:3019812 /DB_XREF=EST196736 /CLONE=RKIBA09 /FEA=EST /CNT=6 /TID=Rn.22552.1 /TIER=Stack /STK=6 /UG=Rn.22552 /UG_TITLE=ESTs, Weakly similar to ACY2_HUMAN ASPARTOACYLASE (H.sapiens) AA892933 aspartoacylase (aminocyclase) 3 Acy3 293653 NM_001009603 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded 0004046 // aminoacylase activity // inferred from electronic annotation /// 0004046 // aminoacylase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1389786_at AA946272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946272 /DB_XREF=gi:3106188 /DB_XREF=EST201771 /CLONE=RLUBD14 /FEA=EST /CNT=6 /TID=Rn.8017.1 /TIER=Stack /STK=6 /UG=Rn.8017 /UG_TITLE=ESTs, Weakly similar to C27H6.4.p (Caenorhabditis elegans) (C.elegans) AA946272 1389787_at AI549469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549469 /DB_XREF=gi:4466957 /DB_XREF=UI-R-C3-tu-c-01-0-UI.s1 /CLONE=UI-R-C3-tu-c-01-0-UI /FEA=EST /CNT=6 /TID=Rn.38520.1 /TIER=Stack /STK=6 /UG=Rn.38520 /UG_TITLE=ESTs, Weakly similar to T14160 transmembrane receptor protein Robo1 - rat (R.norvegicus) AI549469 PTK7 protein tyrosine kinase 7 Ptk7 301242 NM_001106889 0001843 // neural tube closure // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0045198 // establishment of epithelial cell apical/basal polarity // not recorded 0004714 // transmembrane receptor protein tyrosine kinase activity // not recorded /// 0016301 // kinase activity // not recorded 1389788_at AW522732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522732 /DB_XREF=gi:7165082 /DB_XREF=UI-R-BO0-ahl-g-05-0-UI.s1 /CLONE=UI-R-BO0-ahl-g-05-0-UI /FEA=EST /CNT=6 /TID=Rn.9121.1 /TIER=Stack /STK=6 /UG=Rn.9121 /UG_TITLE=ESTs AW522732 MORN repeat containing 4 Morn4 293950 NM_001024975 1389789_at AI059662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059662 /DB_XREF=gi:3333439 /DB_XREF=UI-R-C1-lg-a-10-0-UI.s1 /CLONE=UI-R-C1-lg-a-10-0-UI /FEA=EST /CNT=6 /TID=Rn.19241.1 /TIER=Stack /STK=6 /UG=Rn.19241 /UG_TITLE=ESTs AI059662 1389790_at AI410565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410565 /DB_XREF=gi:4254069 /DB_XREF=EST238858 /CLONE=RHECV06 /FEA=EST /CNT=6 /TID=Rn.40857.1 /TIER=Stack /STK=6 /UG=Rn.40857 /UG_TITLE=ESTs AI410565 1389791_at AI179775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179775 /DB_XREF=gi:3730413 /DB_XREF=EST223504 /CLONE=RSPCL61 /FEA=EST /CNT=6 /TID=Rn.1924.1 /TIER=Stack /STK=6 /UG=Rn.1924 /UG_TITLE=ESTs AI179775 ceroid-lipofuscinosis, neuronal 8 Cln8 306619 NM_001007686 0001306 // age-dependent response to oxidative stress // inferred from electronic annotation /// 0001306 // age-dependent response to oxidative stress // not recorded /// 0006644 // phospholipid metabolic process // not recorded /// 0006644 // phospholipid metabolic process // inferred from sequence or structural similarity /// 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0006672 // ceramide metabolic process // not recorded /// 0006672 // ceramide metabolic process // inferred from sequence or structural similarity /// 0006672 // ceramide metabolic process // inferred from electronic annotation /// 0007006 // mitochondrial membrane organization // inferred from electronic annotation /// 0007006 // mitochondrial membrane organization // not recorded /// 0007040 // lysosome organization // inferred from electronic annotation /// 0007040 // lysosome organization // not recorded /// 0007399 // nervous system development // not recorded /// 0007399 // nervous system development // inferred from sequence or structural similarity /// 0007399 // nervous system development // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0007601 // visual perception // inferred from electronic annotation /// 0007628 // adult walking behavior // inferred from electronic annotation /// 0007628 // adult walking behavior // not recorded /// 0008203 // cholesterol metabolic process // not recorded /// 0008203 // cholesterol metabolic process // inferred from sequence or structural similarity /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008306 // associative learning // inferred from electronic annotation /// 0008306 // associative learning // not recorded /// 0008344 // adult locomotory behavior // not recorded /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008361 // regulation of cell size // inferred from electronic annotation /// 0008361 // regulation of cell size // not recorded /// 0021522 // spinal cord motor neuron differentiation // inferred from electronic annotation /// 0021522 // spinal cord motor neuron differentiation // not recorded /// 0035176 // social behavior // inferred from electronic annotation /// 0035176 // social behavior // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0044257 // cellular protein catabolic process // inferred from electronic annotation /// 0044257 // cellular protein catabolic process // not recorded /// 0044265 // cellular macromolecule catabolic process // not recorded /// 0044265 // cellular macromolecule catabolic process // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // not recorded /// 0044267 // cellular protein metabolic process // inferred from electronic annotation /// 0045494 // photoreceptor cell maintenance // inferred from electronic annotation /// 0045494 // photoreceptor cell maintenance // not recorded /// 0050881 // musculoskeletal movement // inferred from electronic annotation /// 0050881 // musculoskeletal movement // not recorded /// 0050884 // neuromuscular process controlling posture // inferred from electronic annotation /// 0050884 // neuromuscular process controlling posture // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0051348 // negative regulation of transferase activity // inferred from electronic annotation /// 0051348 // negative regulation of transferase activity // not recorded /// 0051935 // glutamate uptake involved in synaptic transmission // inferred from electronic annotation /// 0051935 // glutamate uptake involved in synaptic transmission // not recorded /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // not recorded /// 0060052 // neurofilament cytoskeleton organization // inferred from electronic annotation /// 0060052 // neurofilament cytoskeleton organization // not recorded 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0005793 // ER-Golgi intermediate compartment // inferred from sequence or structural similarity /// 0005793 // ER-Golgi intermediate compartment // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0033116 // ER-Golgi intermediate compartment membrane // inferred from electronic annotation 1389792_at BE329471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329471 /DB_XREF=gi:9203247 /DB_XREF=hq37h01.x1 /CLONE=IMAGE:3121585 /FEA=EST /CNT=6 /TID=Rn.38877.1 /TIER=Stack /STK=6 /UG=Rn.38877 /UG_TITLE=ESTs BE329471 small optic lobes homolog (Drosophila) Solh 303000 NM_001106990 0006508 // proteolysis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1389793_at AW434402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434402 /DB_XREF=gi:6965709 /DB_XREF=UI-R-BJ0p-afl-g-04-0-UI.s1 /CLONE=UI-R-BJ0p-afl-g-04-0-UI /FEA=EST /CNT=6 /TID=Rn.9552.1 /TIER=Stack /STK=6 /UG=Rn.9552 /UG_TITLE=ESTs AW434402 GATA zinc finger domain containing 2A Gatad2a 290669 NM_001013881 0001568 // blood vessel development // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0001842 // neural fold formation // not recorded /// 0010172 // embryonic body morphogenesis // not recorded /// 0012501 // programmed cell death // not recorded /// 0021506 // anterior neuropore closure // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0016581 // NuRD complex // not recorded 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0030674 // protein binding, bridging // not recorded 1389794_at AI044984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044984 /DB_XREF=gi:3291803 /DB_XREF=UI-R-C1-ke-c-09-0-UI.s1 /CLONE=UI-R-C1-ke-c-09-0-UI /FEA=EST /CNT=6 /TID=Rn.16073.1 /TIER=Stack /STK=6 /UG=Rn.16073 /UG_TITLE=ESTs AI044984 1389795_at BG374972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374972 /DB_XREF=gi:13299444 /DB_XREF=UI-R-CV1-bsw-f-04-0-UI.s1 /CLONE=UI-R-CV1-bsw-f-04-0-UI /FEA=EST /CNT=6 /TID=Rn.20273.1 /TIER=Stack /STK=6 /UG=Rn.20273 /UG_TITLE=ESTs BG374972 1389796_at BI298018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298018 /DB_XREF=gi:14974298 /DB_XREF=UI-R-CV2-che-d-09-0-UI.s1 /CLONE=UI-R-CV2-che-d-09-0-UI /FEA=EST /CNT=6 /TID=Rn.50018.1 /TIER=Stack /STK=6 /UG=Rn.50018 /UG_TITLE=ESTs BI298018 1389797_at AI317854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI317854 /DB_XREF=gi:4033121 /DB_XREF=EST234525 /CLONE=RPPAA68 /FEA=EST /CNT=6 /TID=Rn.20362.1 /TIER=Stack /STK=6 /UG=Rn.20362 /UG_TITLE=ESTs AI317854 1389798_at BI299857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299857 /DB_XREF=gi:14976137 /DB_XREF=UI-R-CV2-chy-a-09-0-UI.s1 /CLONE=UI-R-CV2-chy-a-09-0-UI /FEA=EST /CNT=6 /TID=Rn.66599.1 /TIER=Stack /STK=6 /UG=Rn.66599 /UG_TITLE=ESTs BI299857 1389799_at BG378730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378730 /DB_XREF=gi:13303202 /DB_XREF=UI-R-CV1-bvs-b-08-0-UI.s1 /CLONE=UI-R-CV1-bvs-b-08-0-UI /FEA=EST /CNT=6 /TID=Rn.79889.1 /TIER=Stack /STK=6 /UG=Rn.79889 /UG_TITLE=ESTs BG378730 1389800_at BF420629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420629 /DB_XREF=gi:11408618 /DB_XREF=UI-R-BJ2-bpy-c-06-0-UI.s1 /CLONE=UI-R-BJ2-bpy-c-06-0-UI /FEA=EST /CNT=6 /TID=Rn.29879.1 /TIER=Stack /STK=6 /UG=Rn.29879 /UG_TITLE=ESTs BF420629 PWWP domain containing 2B Pwwp2b 361671 NM_001108507 1389801_at BF391339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391339 /DB_XREF=gi:11376191 /DB_XREF=UI-R-CA1-bcr-c-01-0-UI.s1 /CLONE=UI-R-CA1-bcr-c-01-0-UI /FEA=EST /CNT=6 /TID=Rn.24104.1 /TIER=Stack /STK=6 /UG=Rn.24104 /UG_TITLE=ESTs, Highly similar to JC1450 fibroblast growth factor receptor 4 - rat (R.norvegicus) BF391339 fibroblast growth factor receptor 4 Fgfr4 25114 NM_001109904 0001759 // organ induction // inferred from electronic annotation /// 0001759 // organ induction // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from physical interaction /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005007 // fibroblast growth factor receptor activity // inferred from electronic annotation /// 0005007 // fibroblast growth factor receptor activity // inferred from physical interaction /// 0005007 // fibroblast growth factor receptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // not recorded 1389802_at BF403989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403989 /DB_XREF=gi:11391964 /DB_XREF=UI-R-CA1-bjd-c-14-0-UI.s1 /CLONE=UI-R-CA1-bjd-c-14-0-UI /FEA=EST /CNT=6 /TID=Rn.61262.1 /TIER=Stack /STK=6 /UG=Rn.61262 /UG_TITLE=ESTs BF403989 1389803_at BF415514 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415514 /DB_XREF=gi:11403503 /DB_XREF=UI-R-CA1-bjz-h-09-0-UI.s1 /CLONE=UI-R-CA1-bjz-h-09-0-UI /FEA=EST /CNT=6 /TID=Rn.47082.1 /TIER=Stack /STK=6 /UG=Rn.47082 /UG_TITLE=ESTs BF415514 1389804_at BF392605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392605 /DB_XREF=gi:11377462 /DB_XREF=UI-R-CA0-bfl-b-06-0-UI.s1 /CLONE=UI-R-CA0-bfl-b-06-0-UI /FEA=EST /CNT=6 /TID=Rn.16770.1 /TIER=Stack /STK=6 /UG=Rn.16770 /UG_TITLE=ESTs BF392605 RELT tumor necrosis factor receptor Relt 361615 NM_001108495 0004872 // receptor activity // inferred from electronic annotation 1389805_at BF400933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400933 /DB_XREF=gi:11388908 /DB_XREF=UI-R-CA0-bgg-f-04-0-UI.s1 /CLONE=UI-R-CA0-bgg-f-04-0-UI /FEA=EST /CNT=6 /TID=Rn.40939.1 /TIER=Stack /STK=6 /UG=Rn.40939 /UG_TITLE=ESTs BF400933 1389806_at BF402920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402920 /DB_XREF=gi:11390895 /DB_XREF=UI-R-CA0-bhj-b-05-0-UI.s1 /CLONE=UI-R-CA0-bhj-b-05-0-UI /FEA=EST /CNT=6 /TID=Rn.51515.1 /TIER=Stack /STK=6 /UG=Rn.51515 /UG_TITLE=ESTs BF402920 1389807_at AA819220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819220 /DB_XREF=gi:4227881 /DB_XREF=UI-R-A0-al-g-06-0-UI.s2 /CLONE=UI-R-A0-al-g-06-0-UI /FEA=EST /CNT=6 /TID=Rn.23006.1 /TIER=Stack /STK=6 /UG=Rn.23006 /UG_TITLE=ESTs AA819220 hypothetical LOC287935 RGD1308065 287935 NM_001077666 1389808_at BI296177 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296177 /DB_XREF=gi:14960357 /DB_XREF=UI-R-DK0-cex-c-03-0-UI.s1 /CLONE=UI-R-DK0-cex-c-03-0-UI /FEA=EST /CNT=6 /TID=Rn.21927.1 /TIER=Stack /STK=6 /UG=Rn.21927 /UG_TITLE=ESTs BI296177 1389809_at AI410144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410144 /DB_XREF=gi:4253648 /DB_XREF=EST238437 /CLONE=RKIEB18 /FEA=EST /CNT=6 /TID=Rn.28828.1 /TIER=Stack /STK=6 /UG=Rn.28828 /UG_TITLE=ESTs AI410144 prostate transmembrane protein, androgen induced 1 Pmepa1 311676 NM_001107807 0005515 // protein binding // not recorded /// 0050699 // WW domain binding // not recorded 1389810_at BI275054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275054 /DB_XREF=gi:14886542 /DB_XREF=UI-R-CX0-bxb-b-03-0-UI.s1 /CLONE=UI-R-CX0-bxb-b-03-0-UI /FEA=EST /CNT=6 /TID=Rn.1944.2 /TIER=Stack /STK=6 /UG=Rn.1944 /LL=64369 /UG_GENE=Ppap2 /UG_TITLE=phosphatidate phosphohydrolase type 2 BI275054 superkiller viralicidic activity 2-like 2 (S. cerevisiae) Skiv2l2 365668 NM_001034093 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation 1389811_at BE106447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106447 /DB_XREF=gi:8498549 /DB_XREF=UI-R-BO1-aso-b-01-0-UI.s1 /CLONE=UI-R-BO1-aso-b-01-0-UI /FEA=EST /CNT=6 /TID=Rn.46134.1 /TIER=Stack /STK=6 /UG=Rn.46134 /UG_TITLE=ESTs BE106447 RasGEF domain family, member 1C Rasgef1c 360519 NM_001108273 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1389812_at BI279486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279486 /DB_XREF=gi:14927344 /DB_XREF=UI-R-DA0-byo-b-03-0-UI.s1 /CLONE=UI-R-DA0-byo-b-03-0-UI /FEA=EST /CNT=6 /TID=Rn.78317.1 /TIER=Stack /STK=6 /UG=Rn.78317 /UG_TITLE=ESTs BI279486 ABP beta LOC494538 494538 XM_002725567 /// XM_002728733 0005488 // binding // inferred from electronic annotation 1389813_at AI070324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070324 /DB_XREF=gi:3396575 /DB_XREF=UI-R-Y0-lv-a-04-0-UI.s1 /CLONE=UI-R-Y0-lv-a-04-0-UI /FEA=EST /CNT=6 /TID=Rn.20324.1 /TIER=Stack /STK=6 /UG=Rn.20324 /UG_TITLE=ESTs AI070324 1389814_at BI299841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299841 /DB_XREF=gi:14976121 /DB_XREF=UI-R-CV2-chx-h-03-0-UI.s1 /CLONE=UI-R-CV2-chx-h-03-0-UI /FEA=EST /CNT=6 /TID=Rn.79833.1 /TIER=Stack /STK=6 /UG=Rn.79833 /UG_TITLE=ESTs BI299841 hypothetical protein LOC501546 LOC501546 501546 XR_005443 /// XR_009642 0000209 // protein polyubiquitination // inferred from sequence or structural similarity /// 0006464 // protein modification process // inferred from electronic annotation /// 0016574 // histone ubiquitination // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0005488 // binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1389815_at BF547738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547738 /DB_XREF=gi:11638845 /DB_XREF=UI-R-E0-bt-f-07-0-UI.r1 /CLONE=UI-R-E0-bt-f-07-0-UI /FEA=EST /CNT=96 /TID=Rn.2773.1 /TIER=Stack /STK=6 /UG=Rn.2773 /UG_TITLE=ESTs, Highly similar to JC4871 phospholipase C (M.musculus) BF547738 protein phosphatase 1, regulatory (inhibitor) subunit 14B Ppp1r14b 259225 NM_172045 0042325 // regulation of phosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008599 // protein phosphatase type 1 regulator activity // inferred from direct assay /// 0019212 // phosphatase inhibitor activity // inferred from direct assay 1389816_at AA926357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926357 /DB_XREF=gi:4237548 /DB_XREF=UI-R-A1-eu-g-03-0-UI.s1 /CLONE=UI-R-A1-eu-g-03-0-UI /FEA=EST /CNT=100 /TID=Rn.3807.1 /TIER=Stack /STK=88 /UG=Rn.3807 /UG_TITLE=ESTs, Highly similar to NUCG MOUSE ENDONUCLEASE G PRECURSOR (M.musculus) AA926357 endonuclease G Endog 362100 NM_001034938 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // inferred from electronic annotation /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // not recorded /// 0034612 // response to tumor necrosis factor // inferred from electronic annotation /// 0034612 // response to tumor necrosis factor // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0046677 // response to antibiotic // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389817_at AW536017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW536017 /DB_XREF=gi:7178431 /DB_XREF=UI-R-BS0-aog-d-12-0-UI.s1 /CLONE=UI-R-BS0-aog-d-12-0-UI /FEA=EST /CNT=65 /TID=Rn.48562.1 /TIER=Stack /STK=60 /UG=Rn.48562 /UG_TITLE=ESTs AW536017 1389818_at AA997712 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997712 /DB_XREF=gi:4280994 /DB_XREF=UI-R-C0-hp-g-06-0-UI.s1 /CLONE=UI-R-C0-hp-g-06-0-UI /FEA=EST /CNT=54 /TID=Rn.1083.1 /TIER=Stack /STK=45 /UG=Rn.1083 /UG_TITLE=ESTs AA997712 1389819_at BF409843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409843 /DB_XREF=gi:11397818 /DB_XREF=UI-R-CA1-bjr-d-11-0-UI.s1 /CLONE=UI-R-CA1-bjr-d-11-0-UI /FEA=EST /CNT=37 /TID=Rn.51390.1 /TIER=Stack /STK=37 /UG=Rn.51390 /UG_TITLE=ESTs, Weakly similar to S43118 finger protein - mouse (M.musculus) BF409843 1389820_at BF289041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289041 /DB_XREF=gi:11220111 /DB_XREF=EST453632 /CLONE=RGIHA55 /FEA=EST /CNT=173 /TID=Rn.2130.2 /TIER=Stack /STK=33 /UG=Rn.2130 /LL=25524 /UG_GENE=Psap /UG_TITLE=Prosaposin (sulfated glycoprotein, sphingolipid hydrolase activator) BF289041 cytochrome c oxidase, subunit VIIc Cox7c 100188937 NM_001134705 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation 1389821_at AA800815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800815 /DB_XREF=gi:4131543 /DB_XREF=EST190312 /CLONE=RLUAL77 /FEA=EST /CNT=33 /TID=Rn.4294.1 /TIER=Stack /STK=31 /UG=Rn.4294 /UG_TITLE=ESTs AA800815 Transmembrane protein 158 Tmem158 117582 NM_057212 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042277 // peptide binding // inferred from mutant phenotype 1389822_at AI176601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176601 /DB_XREF=gi:3727239 /DB_XREF=EST220190 /CLONE=ROVBU39 /FEA=EST /CNT=34 /TID=Rn.4329.1 /TIER=Stack /STK=30 /UG=Rn.4329 /UG_TITLE=ESTs AI176601 StAR-related lipid transfer (START) domain containing 7 Stard7 296128 NM_001106503 1389823_at BI291462 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291462 /DB_XREF=gi:14951027 /DB_XREF=UI-R-CV2-cgq-e-12-0-UI.s1 /CLONE=UI-R-CV2-cgq-e-12-0-UI /FEA=EST /CNT=30 /TID=Rn.79901.1 /TIER=Stack /STK=30 /UG=Rn.79901 /UG_TITLE=ESTs BI291462 1389824_at BF404381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404381 /DB_XREF=gi:11392356 /DB_XREF=UI-R-CA1-bie-e-07-0-UI.s1 /CLONE=UI-R-CA1-bie-e-07-0-UI /FEA=EST /CNT=29 /TID=Rn.63609.2 /TIER=Stack /STK=28 /UG=Rn.63609 /LL=25400 /UG_GENE=Camk2a /UG_TITLE=Ca2+calmodulin-dependent protein kinase II alpha BF404381 Calcium/calmodulin-dependent protein kinase II alpha Camk2a 25400 NM_012920 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from direct assay /// 0046777 // protein autophosphorylation // not recorded /// 0046928 // regulation of neurotransmitter secretion // not recorded /// 0048168 // regulation of neuronal synaptic plasticity // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005954 // calcium- and calmodulin-dependent protein kinase complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0030666 // endocytic vesicle membrane // not recorded /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from direct assay /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0035254 // glutamate receptor binding // not recorded 1389825_at AW533294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533294 /DB_XREF=gi:7175708 /DB_XREF=UI-R-BU0-anf-b-11-0-UI.s1 /CLONE=UI-R-BU0-anf-b-11-0-UI /FEA=EST /CNT=28 /TID=Rn.39122.1 /TIER=Stack /STK=25 /UG=Rn.39122 /UG_TITLE=ESTs, Weakly similar to NK2 transcription factor related, locus 5 (Drosophila) (Rattus norvegicus) (R.norvegicus) AW533294 Similar to T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Homeobox TLX-2) (PMUR10F) LOC680117 680117 NM_001172125 /// XM_001054603 /// XM_002726406 0001707 // mesoderm formation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048484 // enteric nervous system development // not recorded /// 0050774 // negative regulation of dendrite morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1389826_at AI102567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102567 /DB_XREF=gi:3704689 /DB_XREF=EST211856 /CLONE=REMBP35 /FEA=EST /CNT=26 /TID=Rn.7584.1 /TIER=Stack /STK=24 /UG=Rn.7584 /UG_TITLE=ESTs, Weakly similar to SX10 RAT TRANSCRIPTION FACTOR SOX-10 (R.norvegicus) AI102567 SRY (sex determining region Y)-box 2 Sox2 499593 NM_001109181 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001649 // osteoblast differentiation // not recorded /// 0001654 // eye development // not recorded /// 0001708 // cell fate specification // not recorded /// 0002052 // positive regulation of neuroblast proliferation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0009611 // response to wounding // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0019827 // stem cell maintenance // not recorded /// 0021879 // forebrain neuron differentiation // not recorded /// 0021983 // pituitary gland development // not recorded /// 0021984 // adenohypophysis development // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030539 // male genitalia development // not recorded /// 0030858 // positive regulation of epithelial cell differentiation // not recorded /// 0030900 // forebrain development // not recorded /// 0030910 // olfactory placode formation // not recorded /// 0032526 // response to retinoic acid // not recorded /// 0035019 // somatic stem cell maintenance // not recorded /// 0042221 // response to chemical stimulus // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0043281 // regulation of caspase activity // not recorded /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0043586 // tongue development // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045668 // negative regulation of osteoblast differentiation // not recorded /// 0045747 // positive regulation of Notch signaling pathway // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046148 // pigment biosynthetic process // not recorded /// 0048286 // lung alveolus development // not recorded /// 0048568 // embryonic organ development // not recorded /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded /// 0048663 // neuron fate commitment // not recorded /// 0048839 // inner ear development // not recorded /// 0048852 // diencephalon morphogenesis // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // not recorded /// 0050973 // detection of mechanical stimulus involved in equilibrioception // not recorded /// 0060042 // retina morphogenesis in camera-type eye // not recorded /// 0060235 // lens induction in camera-type eye // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // not recorded /// 0070848 // response to growth factor stimulus // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0035198 // miRNA binding // not recorded /// 0043565 // sequence-specific DNA binding // not recorded 1389827_at AI408556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408556 /DB_XREF=gi:4252060 /DB_XREF=EST236846 /CLONE=ROVEQ69 /FEA=EST /CNT=28 /TID=Rn.6946.2 /TIER=Stack /STK=23 /UG=Rn.6946 /LL=29189 /UG_GENE=Fdx1 /UG_TITLE=ferredoxin 1 AI408556 Ferredoxin 1 Fdx1 29189 NM_017126 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // inferred from direct assay 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0009055 // electron carrier activity // inferred from direct assay /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation 1389828_at AI176576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176576 /DB_XREF=gi:3727214 /DB_XREF=EST220164 /CLONE=ROVBU09 /FEA=EST /CNT=18 /TID=Rn.6975.2 /TIER=Stack /STK=16 /UG=Rn.6975 /LL=25695 /UG_GENE=Cebpd /UG_TITLE=CCAATenhancerbinding, protein (CEBP) delta AI176576 CCAAT/enhancer binding protein (C/EBP), delta Cebpd 25695 NM_013154 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003704 // specific RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0046983 // protein dimerization activity // inferred from electronic annotation 1389829_at BE113141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113141 /DB_XREF=gi:8505246 /DB_XREF=UI-R-BJ1-awc-a-05-0-UI.s1 /CLONE=UI-R-BJ1-awc-a-05-0-UI /FEA=EST /CNT=18 /TID=Rn.22296.1 /TIER=Stack /STK=16 /UG=Rn.22296 /UG_TITLE=ESTs BE113141 1389830_at AI105117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105117 /DB_XREF=gi:3709281 /DB_XREF=EST214406 /CLONE=RHECN82 /FEA=EST /CNT=18 /TID=Rn.22469.1 /TIER=Stack /STK=16 /UG=Rn.22469 /UG_TITLE=ESTs AI105117 upstream binding transcription factor, RNA polymerase I Ubtf 25574 NM_001105723 /// NM_001127690 0000183 // chromatin silencing at rDNA // inferred from electronic annotation /// 0000183 // chromatin silencing at rDNA // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045943 // positive regulation of transcription from RNA polymerase I promoter // not recorded /// 0045943 // positive regulation of transcription from RNA polymerase I promoter // inferred from sequence or structural similarity /// 0045943 // positive regulation of transcription from RNA polymerase I promoter // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389831_at BI296721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296721 /DB_XREF=gi:14961431 /DB_XREF=UI-R-CV2-cgv-e-09-0-UI.s1 /CLONE=UI-R-CV2-cgv-e-09-0-UI /FEA=EST /CNT=16 /TID=Rn.79900.1 /TIER=Stack /STK=16 /UG=Rn.79900 /UG_TITLE=ESTs BI296721 1389832_at BE113459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113459 /DB_XREF=gi:8505564 /DB_XREF=UI-R-BJ1-awl-e-10-0-UI.s1 /CLONE=UI-R-BJ1-awl-e-10-0-UI /FEA=EST /CNT=18 /TID=Rn.25166.1 /TIER=Stack /STK=15 /UG=Rn.25166 /UG_TITLE=ESTs, Highly similar to GTO1_RAT GLUTATHIONE TRANSFERASE OMEGA 1 (GSTO 1-1) (GLUTATHIONE-DEPENDENT DEHYDROASCORBATE REDUCTASE) (R.norvegicus) BE113459 glutathione S-transferase omega 1 Gsto1 114846 NM_001007602 0008152 // metabolic process // inferred from electronic annotation /// 0019853 // L-ascorbic acid biosynthetic process // inferred from mutant phenotype 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation 0004364 // glutathione transferase activity // non-traceable author statement /// 0004364 // glutathione transferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0045174 // glutathione dehydrogenase (ascorbate) activity // non-traceable author statement 1389833_at BF285924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285924 /DB_XREF=gi:11216994 /DB_XREF=EST450515 /CLONE=RGIFL13 /FEA=EST /CNT=21 /TID=Rn.3117.3 /TIER=Stack /STK=15 /UG=Rn.3117 /LL=83513 /UG_GENE=Mmp24 /UG_TITLE=matrix metalloproteinase 24 (membrane-inserted) BF285924 1389834_at AI237690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237690 /DB_XREF=gi:3831196 /DB_XREF=EST234252 /CLONE=RPLDC61 /FEA=EST /CNT=17 /TID=Rn.23628.1 /TIER=Stack /STK=15 /UG=Rn.23628 /UG_TITLE=ESTs, Weakly similar to Y38A8.1.p (Caenorhabditis elegans) (C.elegans) AI237690 Nudix (nucleoside diphosphate linked moiety X)-type motif 8 Nudt8 361692 XM_341975 0005739 // mitochondrion // not recorded 0016787 // hydrolase activity // inferred from electronic annotation 1389835_at AI598405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598405 /DB_XREF=gi:4607453 /DB_XREF=EST250108 /CLONE=REMDQ12 /FEA=EST /CNT=15 /TID=Rn.22344.2 /TIER=Stack /STK=15 /UG=Rn.22344 /UG_TITLE=ESTs, Highly similar to similar to S. cerevisiae RER1 (Homo sapiens) (H.sapiens) AI598405 1389836_a_at AI599265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599265 /DB_XREF=gi:4608313 /DB_XREF=EST250968 /CLONE=REMEP82 /FEA=EST /CNT=31 /TID=Rn.3467.4 /TIER=Stack /STK=14 /UG=Rn.3467 /LL=25358 /UG_GENE=Timp3 /UG_TITLE=Tissue inhibitor of metalloproteinase 3 AI599265 1389837_at AI502527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502527 /DB_XREF=gi:4400378 /DB_XREF=UI-R-C2-nd-b-04-0-UI.s1 /CLONE=UI-R-C2-nd-b-04-0-UI /FEA=EST /CNT=18 /TID=Rn.13533.1 /TIER=Stack /STK=14 /UG=Rn.13533 /UG_TITLE=ESTs, Weakly similar to JE0343 terf protein - rat (R.norvegicus) AI502527 ring finger protein 187 Rnf187 360533 NM_001164264 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1389838_at AW527201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527201 /DB_XREF=gi:7169615 /DB_XREF=UI-R-BO1-ajm-f-07-0-UI.s1 /CLONE=UI-R-BO1-ajm-f-07-0-UI /FEA=EST /CNT=17 /TID=Rn.9560.3 /TIER=Stack /STK=14 /UG=Rn.9560 /LL=25603 /UG_GENE=Macs /UG_TITLE=Myristoylated alanine-rich protein kinase C substrate AW527201 Myristoylated alanine rich protein kinase C substrate Marcks 25603 XM_002728965 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0042585 // germinal vesicle // inferred from electronic annotation /// 0042585 // germinal vesicle // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005080 // protein kinase C binding // inferred from electronic annotation /// 0005080 // protein kinase C binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation 1389839_at BE112411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112411 /DB_XREF=gi:8504516 /DB_XREF=UI-R-BJ1-avm-d-03-0-UI.s1 /CLONE=UI-R-BJ1-avm-d-03-0-UI /FEA=EST /CNT=17 /TID=Rn.8545.1 /TIER=Stack /STK=14 /UG=Rn.8545 /UG_TITLE=ESTs, Weakly similar to SYECDP dihydrodipicolinate synthase (EC 4.2.1.52) (validated) - Escherichia coli (E.coli) BE112411 N-acetylneuraminate pyruvate lyase 2 (putative) Npl2 293949 NM_001106355 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation 1389840_at BM384277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384277 /DB_XREF=gi:18184330 /DB_XREF=UI-R-DZ0-cks-m-21-0-UI.s1 /CLONE=UI-R-DZ0-cks-m-21-0-UI /FEA=EST /CNT=21 /TID=Rn.19433.1 /TIER=Stack /STK=14 /UG=Rn.19433 /UG_TITLE=ESTs, Highly similar to splicing factor 3b, subunit 1, 155 kDa (Mus musculus) (M.musculus) BM384277 splicing factor 3b, subunit 1 Sf3b1 84486 NM_053426 0008380 // RNA splicing // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389841_at BI296641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296641 /DB_XREF=gi:14961268 /DB_XREF=UI-R-CV2-cgt-f-02-0-UI.s1 /CLONE=UI-R-CV2-cgt-f-02-0-UI /FEA=EST /CNT=15 /TID=Rn.20853.1 /TIER=Stack /STK=14 /UG=Rn.20853 /UG_TITLE=ESTs BI296641 1389842_at AW253423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253423 /DB_XREF=gi:6597014 /DB_XREF=UI-R-BJ0-aen-g-01-0-UI.s1 /CLONE=UI-R-BJ0-aen-g-01-0-UI /FEA=EST /CNT=15 /TID=Rn.22639.1 /TIER=Stack /STK=14 /UG=Rn.22639 /UG_TITLE=ESTs AW253423 Similar to LOC387763 protein RGD1564664 499839 NM_001110055 1389843_at AI556436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556436 /DB_XREF=gi:4488799 /DB_XREF=UI-R-C2p-rh-e-11-0-UI.s1 /CLONE=UI-R-C2p-rh-e-11-0-UI /FEA=EST /CNT=14 /TID=Rn.3349.1 /TIER=Stack /STK=14 /UG=Rn.3349 /UG_TITLE=ESTs, Highly similar to BRD2_HUMAN Bromodomain-containing protein 2 (RING3 protein) (H.sapiens) AI556436 Bromodomain containing 2 Brd2 294276 NM_212495 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 1389844_at BE113154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113154 /DB_XREF=gi:8505259 /DB_XREF=UI-R-BJ1-awc-b-07-0-UI.s1 /CLONE=UI-R-BJ1-awc-b-07-0-UI /FEA=EST /CNT=40 /TID=Rn.23741.1 /TIER=Stack /STK=13 /UG=Rn.23741 /UG_TITLE=ESTs, Highly similar to P59 PROTEIN (M.musculus) BE113154 FK506 binding protein 4 Fkbp4 260321 NM_001191863 /// XM_001066628 /// XM_342763 0006457 // protein folding // inferred from electronic annotation /// 0006463 // steroid hormone receptor complex assembly // inferred from electronic annotation /// 0006463 // steroid hormone receptor complex assembly // not recorded /// 0006825 // copper ion transport // inferred from mutant phenotype /// 0007566 // embryo implantation // inferred from electronic annotation /// 0007566 // embryo implantation // not recorded /// 0010977 // negative regulation of neuron projection development // inferred from sequence or structural similarity /// 0030521 // androgen receptor signaling pathway // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // not recorded /// 0030850 // prostate gland development // inferred from electronic annotation /// 0030850 // prostate gland development // not recorded /// 0031111 // negative regulation of microtubule polymerization or depolymerization // inferred from sequence or structural similarity /// 0031503 // protein complex localization // inferred from electronic annotation /// 0031503 // protein complex localization // not recorded /// 0046661 // male sex differentiation // inferred from electronic annotation /// 0046661 // male sex differentiation // not recorded /// 0048608 // reproductive structure development // not recorded /// 0048608 // reproductive structure development // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0044295 // axonal growth cone // inferred from direct assay 0003755 // peptidyl-prolyl cis-trans isomerase activity // traceable author statement /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // not recorded /// 0035259 // glucocorticoid receptor binding // inferred from electronic annotation /// 0035259 // glucocorticoid receptor binding // not recorded /// 0048156 // tau protein binding // inferred from physical interaction /// 0051219 // phosphoprotein binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // not recorded 1389845_at BI282224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282224 /DB_XREF=gi:14932782 /DB_XREF=UI-R-CU0s-cby-b-01-0-UI.s1 /CLONE=UI-R-CU0s-cby-b-01-0-UI /FEA=EST /CNT=19 /TID=Rn.7543.1 /TIER=Stack /STK=13 /UG=Rn.7543 /UG_TITLE=ESTs BI282224 1389846_at BE104273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104273 /DB_XREF=gi:8496373 /DB_XREF=UI-R-BX0-arm-h-02-0-UI.s1 /CLONE=UI-R-BX0-arm-h-02-0-UI /FEA=EST /CNT=15 /TID=Rn.24727.2 /TIER=Stack /STK=13 /UG=Rn.24727 /UG_TITLE=R.norvegicus mRNA for tropomyosin isoform 6 BE104273 Tropomyosin 3, gamma Tpm3 117557 NM_057208 /// NM_173111 0007420 // brain development // inferred from expression pattern 0002102 // podosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1389847_at AA799611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799611 /DB_XREF=gi:2862566 /DB_XREF=EST189108 /CLONE=RHEAD14 /FEA=EST /CNT=15 /TID=Rn.12967.1 /TIER=Stack /STK=13 /UG=Rn.12967 /UG_TITLE=ESTs, Weakly similar to Notch gene homolog 2, (Drosophila) (Rattus norvegicus) (R.norvegicus) AA799611 Notch homolog 4 (Drosophila) Notch4 406162 NM_001002827 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001763 // morphogenesis of a branching structure // inferred from electronic annotation /// 0001763 // morphogenesis of a branching structure // not recorded /// 0001886 // endothelial cell morphogenesis // inferred from direct assay /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030879 // mammary gland development // inferred from electronic annotation /// 0030879 // mammary gland development // not recorded /// 0045446 // endothelial cell differentiation // inferred from direct assay /// 0045602 // negative regulation of endothelial cell differentiation // inferred from electronic annotation /// 0045602 // negative regulation of endothelial cell differentiation // not recorded /// 0050793 // regulation of developmental process // inferred from electronic annotation 0005886 // plasma membrane // inferred from mutant phenotype /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389848_at BE097243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097243 /DB_XREF=gi:8488174 /DB_XREF=UI-R-BO1-apv-a-06-0-UI.s1 /CLONE=UI-R-BO1-apv-a-06-0-UI /FEA=EST /CNT=15 /TID=Rn.40704.1 /TIER=Stack /STK=13 /UG=Rn.40704 /UG_TITLE=ESTs BE097243 Rho GTPase activating protein 23 Arhgap23 303501 XM_001081375 /// XM_220918 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1389849_at BE111831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111831 /DB_XREF=gi:8503936 /DB_XREF=UI-R-BJ1-avz-c-06-0-UI.s1 /CLONE=UI-R-BJ1-avz-c-06-0-UI /FEA=EST /CNT=15 /TID=Rn.39035.1 /TIER=Stack /STK=13 /UG=Rn.39035 /UG_TITLE=ESTs BE111831 transmembrane protein 42 Tmem42 363171 NM_001191886 /// XM_001078553 /// XM_002729984 /// XM_343510 0016021 // integral to membrane // inferred from electronic annotation 1389850_at AA900926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900926 /DB_XREF=gi:4233422 /DB_XREF=UI-R-E0-dc-d-08-0-UI.s1 /CLONE=UI-R-E0-dc-d-08-0-UI /FEA=EST /CNT=14 /TID=Rn.14357.1 /TIER=Stack /STK=13 /UG=Rn.14357 /UG_TITLE=ESTs AA900926 AT rich interactive domain 1A (SWI-like) Arid1a 297867 NM_001106635 0006325 // chromatin organization // not recorded /// 0030520 // estrogen receptor signaling pathway // not recorded /// 0030521 // androgen receptor signaling pathway // not recorded /// 0042921 // glucocorticoid receptor signaling pathway // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0016514 // SWI/SNF complex // not recorded /// 0071564 // npBAF complex // not recorded /// 0071565 // nBAF complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded 1389851_at AA943730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943730 /DB_XREF=gi:3103646 /DB_XREF=EST199229 /CLONE=RBRAO66 /FEA=EST /CNT=14 /TID=Rn.22055.1 /TIER=Stack /STK=13 /UG=Rn.22055 /UG_TITLE=ESTs, Weakly similar to TIS11B PROTEIN (R.norvegicus) AA943730 zinc finger protein 36, C3H type-like 2 Zfp36l2 298765 NM_001036626 0000288 // nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // not recorded /// 0043488 // regulation of mRNA stability // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389852_at AI598316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598316 /DB_XREF=gi:4607364 /DB_XREF=EST250019 /CLONE=REMDO10 /FEA=EST /CNT=13 /TID=Rn.11654.1 /TIER=Stack /STK=13 /UG=Rn.11654 /UG_TITLE=ESTs AI598316 centromere protein M Cenpm 315164 NM_001130504 1389853_at AI227900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227900 /DB_XREF=gi:3811787 /DB_XREF=EST224595 /CLONE=RBRCN34 /FEA=EST /CNT=13 /TID=Rn.22197.1 /TIER=Stack /STK=13 /UG=Rn.22197 /UG_TITLE=ESTs AI227900 RIKEN cDNA A830041P22-like LOC100359879 100359879 XM_002725551 /// XM_002728716 0009607 // response to biotic stimulus // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 1389854_at AA956855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956855 /DB_XREF=gi:4239329 /DB_XREF=UI-R-E1-fo-c-06-0-UI.s1 /CLONE=UI-R-E1-fo-c-06-0-UI /FEA=EST /CNT=13 /TID=Rn.786.2 /TIER=Stack /STK=13 /UG=Rn.786 /LL=58851 /UG_GENE=Nr1h2 /UG_TITLE=nuclear receptor subfamily 1, group H, member 2 AA956855 Nuclear receptor subfamily 1, group H, member 2 Nr1h2 58851 NM_031626 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0007165 // signal transduction // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010628 // positive regulation of gene expression // inferred from direct assay /// 0010629 // negative regulation of gene expression // inferred from direct assay /// 0010867 // positive regulation of triglyceride biosynthetic process // inferred from electronic annotation /// 0010867 // positive regulation of triglyceride biosynthetic process // not recorded /// 0010875 // positive regulation of cholesterol efflux // inferred from electronic annotation /// 0010875 // positive regulation of cholesterol efflux // not recorded /// 0010884 // positive regulation of lipid storage // inferred from electronic annotation /// 0010884 // positive regulation of lipid storage // not recorded /// 0010887 // negative regulation of cholesterol storage // inferred from electronic annotation /// 0010887 // negative regulation of cholesterol storage // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0032270 // positive regulation of cellular protein metabolic process // inferred from electronic annotation /// 0032270 // positive regulation of cellular protein metabolic process // not recorded /// 0032369 // negative regulation of lipid transport // inferred from electronic annotation /// 0032369 // negative regulation of lipid transport // not recorded /// 0032376 // positive regulation of cholesterol transport // not recorded /// 0032376 // positive regulation of cholesterol transport // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0044255 // cellular lipid metabolic process // inferred from electronic annotation /// 0044255 // cellular lipid metabolic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045723 // positive regulation of fatty acid biosynthetic process // inferred from electronic annotation /// 0045723 // positive regulation of fatty acid biosynthetic process // not recorded /// 0045861 // negative regulation of proteolysis // inferred from electronic annotation /// 0045861 // negative regulation of proteolysis // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 0048384 // retinoic acid receptor signaling pathway // inferred from direct assay /// 0048550 // negative regulation of pinocytosis // inferred from electronic annotation /// 0048550 // negative regulation of pinocytosis // not recorded /// 0051006 // positive regulation of lipoprotein lipase activity // inferred from electronic annotation /// 0051006 // positive regulation of lipoprotein lipase activity // not recorded /// 0055088 // lipid homeostasis // inferred from electronic annotation /// 0055088 // lipid homeostasis // not recorded /// 0090108 // positive regulation of high-density lipoprotein particle assembly // inferred from electronic annotation /// 0090108 // positive regulation of high-density lipoprotein particle assembly // not recorded /// 0090187 // positive regulation of pancreatic juice secretion // inferred from electronic annotation /// 0090187 // positive regulation of pancreatic juice secretion // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // not recorded /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // inferred from direct assay /// 0046965 // retinoid X receptor binding // inferred from physical interaction /// 0046965 // retinoid X receptor binding // not recorded /// 0046965 // retinoid X receptor binding // inferred from electronic annotation 1389855_at BF414575 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414575 /DB_XREF=gi:11402564 /DB_XREF=UI-R-CA0-bpb-c-08-0-UI.s1 /CLONE=UI-R-CA0-bpb-c-08-0-UI /FEA=EST /CNT=13 /TID=Rn.54550.2 /TIER=Stack /STK=13 /UG=Rn.54550 /LL=117256 /UG_GENE=Ppp2r2c /UG_TITLE=protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform BF414575 Protein phosphatase 2 (formerly 2A), regulatory subunit B, gamma isoform Ppp2r2c 117256 NM_057116 0007165 // signal transduction // inferred from electronic annotation 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation 0008601 // protein phosphatase type 2A regulator activity // inferred from electronic annotation 1389856_at AA894183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894183 /DB_XREF=gi:3021062 /DB_XREF=EST197986 /CLONE=RSPAS27 /FEA=EST /CNT=49 /TID=Rn.25934.1 /TIER=Stack /STK=12 /UG=Rn.25934 /UG_TITLE=ESTs, Moderately similar to 1809184A pregnancy-specific glycoprotein (R.norvegicus) AA894183 carcinoembryonic antigen gene family 4 Cgm4 24257 NM_012525 0007565 // female pregnancy // inferred from expression pattern 1389857_at BG378874 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378874 /DB_XREF=gi:13303346 /DB_XREF=UI-R-CV1-bvt-h-05-0-UI.s1 /CLONE=UI-R-CV1-bvt-h-05-0-UI /FEA=EST /CNT=31 /TID=Rn.6930.1 /TIER=Stack /STK=12 /UG=Rn.6930 /UG_TITLE=ESTs, Weakly similar to I53785 gene pp21 protein (H.sapiens) BG378874 WW domain binding protein 5 Wbp5 680354 NM_001127502 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0050699 // WW domain binding // inferred from electronic annotation /// 0050699 // WW domain binding // not recorded 1389858_at BM389006 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389006 /DB_XREF=gi:18189059 /DB_XREF=UI-R-DZ0-ckn-n-10-0-UI.s1 /CLONE=UI-R-DZ0-ckn-n-10-0-UI /FEA=EST /CNT=17 /TID=Rn.4191.1 /TIER=Stack /STK=12 /UG=Rn.4191 /UG_TITLE=ESTs, Highly similar to THYMIDINE KINASE, CYTOSOLIC (R.norvegicus) BM389006 thymidine kinase 1, soluble Tk1 24834 NM_052800 0001889 // liver development // inferred from expression pattern /// 0006260 // DNA replication // inferred from electronic annotation /// 0009636 // response to toxin // inferred from expression pattern /// 0014856 // skeletal muscle cell proliferation // inferred from expression pattern /// 0016310 // phosphorylation // not recorded /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0046104 // thymidine metabolic process // inferred from direct assay /// 0046688 // response to copper ion // inferred from expression pattern /// 0048565 // digestive tract development // inferred from expression pattern /// 0051414 // response to cortisol stimulus // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0060138 // fetal process involved in parturition // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004797 // thymidine kinase activity // inferred from electronic annotation /// 0004797 // thymidine kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1389859_at AI235291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235291 /DB_XREF=gi:3828797 /DB_XREF=EST231853 /CLONE=ROVCP87 /FEA=EST /CNT=15 /TID=Rn.12208.3 /TIER=Stack /STK=12 /UG=Rn.12208 /LL=113927 /UG_GENE=Csnk1a1 /UG_TITLE=casein kinase 1, alpha 1 AI235291 Casein kinase 1, alpha 1 Csnk1a1 113927 NM_053615 0000902 // cell morphogenesis // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0001948 // glycoprotein binding // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0051219 // phosphoprotein binding // inferred from direct assay 1389860_at AI011744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011744 /DB_XREF=gi:4133487 /DB_XREF=EST206195 /CLONE=ROVAZ59 /FEA=EST /CNT=16 /TID=Rn.8138.1 /TIER=Stack /STK=12 /UG=Rn.8138 /UG_TITLE=ESTs, Moderately similar to T29029 hypothetical protein F53G12.5 - Caenorhabditis elegans (C.elegans) AI011744 Ring finger and KH domain containing 2 Rkhd2 307271 NM_001107377 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389861_at BE111612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111612 /DB_XREF=gi:8503717 /DB_XREF=UI-R-BJ1-avc-g-11-0-UI.s1 /CLONE=UI-R-BJ1-avc-g-11-0-UI /FEA=EST /CNT=14 /TID=Rn.22921.1 /TIER=Stack /STK=12 /UG=Rn.22921 /UG_TITLE=ESTs, Weakly similar to DVL1 RAT SEGMENT POLARITY PROTEIN DISHEVELLED HOMOLOG DVL-1 (R.norvegicus) BE111612 dishevelled 2 Dvl2 303251 NM_001172056 0007275 // multicellular organismal development // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1389862_at AI407064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407064 /DB_XREF=gi:4250568 /DB_XREF=EST235352 /CLONE=ROVDR32 /FEA=EST /CNT=13 /TID=Rn.17454.1 /TIER=Stack /STK=12 /UG=Rn.17454 /UG_TITLE=ESTs, Weakly similar to S69697 hypothetical protein YDR412w - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AI407064 nucleolar protein 12 Nol12 362955 NM_001012747 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0019843 // rRNA binding // inferred from direct assay /// 0019843 // rRNA binding // inferred from electronic annotation 1389863_at AA924554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924554 /DB_XREF=gi:4235745 /DB_XREF=UI-R-A1-dz-f-12-0-UI.s1 /CLONE=UI-R-A1-dz-f-12-0-UI /FEA=EST /CNT=13 /TID=Rn.6526.1 /TIER=Stack /STK=12 /UG=Rn.6526 /UG_TITLE=ESTs, Highly similar to KF1B_RAT KINESIN-LIKE PROTEIN KIF1B (R.norvegicus) AA924554 Kinesin family member 1B Kif1b 117548 NM_057200 0005975 // carbohydrate metabolic process // inferred from direct assay /// 0006098 // pentose-phosphate shunt // inferred from direct assay /// 0006200 // ATP catabolic process // not recorded /// 0006739 // NADP metabolic process // inferred from direct assay /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007018 // microtubule-based movement // not recorded /// 0007018 // microtubule-based movement // inferred from sequence or structural similarity /// 0007270 // nerve-nerve synaptic transmission // not recorded /// 0007270 // nerve-nerve synaptic transmission // inferred from sequence or structural similarity /// 0007270 // nerve-nerve synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0007274 // neuromuscular synaptic transmission // inferred from sequence or structural similarity /// 0007274 // neuromuscular synaptic transmission // inferred from electronic annotation /// 0008089 // anterograde axon cargo transport // not recorded /// 0008089 // anterograde axon cargo transport // inferred from sequence or structural similarity /// 0008089 // anterograde axon cargo transport // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0009051 // pentose-phosphate shunt, oxidative branch // inferred from mutant phenotype /// 0019521 // D-gluconate metabolic process // inferred from direct assay /// 0030705 // cytoskeleton-dependent intracellular transport // not recorded /// 0030705 // cytoskeleton-dependent intracellular transport // inferred from sequence or structural similarity /// 0030705 // cytoskeleton-dependent intracellular transport // inferred from electronic annotation /// 0047497 // mitochondrion transport along microtubule // inferred from electronic annotation /// 0047497 // mitochondrion transport along microtubule // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // not recorded /// 0005875 // microtubule associated complex // inferred from sequence or structural similarity /// 0005875 // microtubule associated complex // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // not recorded /// 0030659 // cytoplasmic vesicle membrane // inferred from sequence or structural similarity /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // not recorded /// 0003777 // microtubule motor activity // inferred from sequence or structural similarity /// 0004616 // phosphogluconate dehydrogenase (decarboxylating) activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from direct assay /// 0016887 // ATPase activity // not recorded /// 0016887 // ATPase activity // inferred from sequence or structural similarity /// 0016887 // ATPase activity // inferred from electronic annotation /// 0031406 // carboxylic acid binding // inferred from direct assay /// 0050661 // NADP or NADPH binding // inferred from direct assay 1389864_at BF405086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405086 /DB_XREF=gi:11393061 /DB_XREF=UI-R-CA1-bip-d-11-0-UI.s1 /CLONE=UI-R-CA1-bip-d-11-0-UI /FEA=EST /CNT=12 /TID=Rn.63624.1 /TIER=Stack /STK=12 /UG=Rn.63624 /UG_TITLE=ESTs BF405086 1389865_at AW525690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525690 /DB_XREF=gi:7168075 /DB_XREF=UI-R-BJ0p-aiu-f-08-0-UI.s1 /CLONE=UI-R-BJ0p-aiu-f-08-0-UI /FEA=EST /CNT=12 /TID=Rn.12456.1 /TIER=Stack /STK=12 /UG=Rn.12456 /UG_TITLE=ESTs, Weakly similar to Y57A10A.25.p (Caenorhabditis elegans) (C.elegans) AW525690 target of EGR1, member 1 (nuclear) Toe1 298443 NM_001106680 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1389866_at AI599296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599296 /DB_XREF=gi:4608344 /DB_XREF=EST250999 /CLONE=REMEQ78 /FEA=EST /CNT=25 /TID=Rn.8483.1 /TIER=Stack /STK=11 /UG=Rn.8483 /UG_TITLE=ESTs, Moderately similar to 68MP MOUSE 6.8 KD MITOCHONDRIAL PROTEOLIPID (M.musculus) AI599296 6.8 kDa mitochondrial proteolipid LOC100360056 100360056 XM_002728802 0005739 // mitochondrion // inferred from electronic annotation 1389867_at BI281086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281086 /DB_XREF=gi:14930475 /DB_XREF=UI-R-DD0-bzr-a-10-0-UI.s1 /CLONE=UI-R-DD0-bzr-a-10-0-UI /FEA=EST /CNT=34 /TID=Rn.37864.1 /TIER=Stack /STK=11 /UG=Rn.37864 /UG_TITLE=ESTs BI281086 1389868_at AA850780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850780 /DB_XREF=gi:2938320 /DB_XREF=EST193548 /CLONE=ROVAK69 /FEA=EST /CNT=19 /TID=Rn.4270.1 /TIER=Stack /STK=11 /UG=Rn.4270 /UG_TITLE=ESTs AA850780 similar to RCK RGD1564560 500988 NM_001109292 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1389869_at BM390235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390235 /DB_XREF=gi:18190288 /DB_XREF=UI-R-CN1-cjq-i-13-0-UI.s1 /CLONE=UI-R-CN1-cjq-i-13-0-UI /FEA=EST /CNT=16 /TID=Rn.6896.1 /TIER=Stack /STK=11 /UG=Rn.6896 /UG_TITLE=ESTs, Highly similar to C184L-22 (Mus musculus) (M.musculus) BM390235 Sjogren's syndrome/scleroderma autoantigen 1 homolog (human) Sssca1 689397 NM_001109537 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1389870_at AI013040 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013040 /DB_XREF=gi:4133735 /DB_XREF=EST207491 /CLONE=RSPBB87 /FEA=EST /CNT=14 /TID=Rn.17581.2 /TIER=Stack /STK=11 /UG=Rn.17581 /UG_TITLE=ESTs, Weakly similar to T00268 hypothetical protein KIAA0597 (H.sapiens) AI013040 membrane-associated ring finger (C3HC4) 2 March2 362849 NM_001034108 0006897 // endocytosis // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389871_at BI296539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296539 /DB_XREF=gi:14961062 /DB_XREF=UI-R-CV2-cgs-d-06-0-UI.s1 /CLONE=UI-R-CV2-cgs-d-06-0-UI /FEA=EST /CNT=13 /TID=Rn.73216.1 /TIER=Stack /STK=11 /UG=Rn.73216 /UG_TITLE=ESTs, Highly similar to AATM RAT ASPARTATE AMINOTRANSFERASE, MITOCHONDRIAL PRECURSOR (R.norvegicus) BI296539 glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) Got2 25721 NM_013177 0006103 // 2-oxoglutarate metabolic process // inferred from sequence or structural similarity /// 0006107 // oxaloacetate metabolic process // not recorded /// 0006520 // cellular amino acid metabolic process // inferred from direct assay /// 0006520 // cellular amino acid metabolic process // traceable author statement /// 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006531 // aspartate metabolic process // inferred from mutant phenotype /// 0006531 // aspartate metabolic process // inferred from sequence or structural similarity /// 0006532 // aspartate biosynthetic process // not recorded /// 0006533 // aspartate catabolic process // not recorded /// 0006536 // glutamate metabolic process // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0015908 // fatty acid transport // not recorded /// 0015908 // fatty acid transport // traceable author statement /// 0019550 // glutamate catabolic process to aspartate // not recorded /// 0019551 // glutamate catabolic process to 2-oxoglutarate // not recorded /// 0043648 // dicarboxylic acid metabolic process // inferred from direct assay /// 0045471 // response to ethanol // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0043204 // perikaryon // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004069 // L-aspartate:2-oxoglutarate aminotransferase activity // inferred from direct assay /// 0004069 // L-aspartate:2-oxoglutarate aminotransferase activity // inferred from mutant phenotype /// 0004069 // L-aspartate:2-oxoglutarate aminotransferase activity // not recorded /// 0004069 // L-aspartate:2-oxoglutarate aminotransferase activity // inferred from sequence or structural similarity /// 0004069 // L-aspartate:2-oxoglutarate aminotransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005543 // phospholipid binding // inferred from direct assay /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from direct assay /// 0030170 // pyridoxal phosphate binding // inferred from direct assay /// 0030170 // pyridoxal phosphate binding // inferred from mutant phenotype /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0031406 // carboxylic acid binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from mutant phenotype 1389872_at AI008996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008996 /DB_XREF=gi:3222828 /DB_XREF=EST203447 /CLONE=REMBG89 /FEA=EST /CNT=16 /TID=Rn.22508.1 /TIER=Stack /STK=11 /UG=Rn.22508 /UG_TITLE=ESTs AI008996 ring finger protein 123 Rnf123 100190936 NM_001191580 /// XM_002727136 /// XM_002729963 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389873_at BI282953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282953 /DB_XREF=gi:14934229 /DB_XREF=UI-R-CW0s-ccf-c-06-0-UI.s1 /CLONE=UI-R-CW0s-ccf-c-06-0-UI /FEA=EST /CNT=13 /TID=Rn.7817.1 /TIER=Stack /STK=11 /UG=Rn.7817 /UG_TITLE=ESTs, Moderately similar to apoptosis-associated speck-like protein containing a CARD (Mus musculus) (M.musculus) BI282953 PYD and CARD domain containing Pycard 282817 NM_172322 0006508 // proteolysis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from mutant phenotype /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0033209 // tumor necrosis factor-mediated signaling pathway // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043280 // positive regulation of caspase activity // not recorded /// 0043280 // positive regulation of caspase activity // inferred from sequence or structural similarity /// 0043281 // regulation of caspase activity // not recorded /// 0043281 // regulation of caspase activity // inferred from electronic annotation /// 0050718 // positive regulation of interleukin-1 beta secretion // not recorded /// 0050718 // positive regulation of interleukin-1 beta secretion // inferred from sequence or structural similarity /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0032090 // Pyrin domain binding // not recorded /// 0032090 // Pyrin domain binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity 1389874_at BF404554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404554 /DB_XREF=gi:11392494 /DB_XREF=UI-R-CA1-big-d-05-0-UI.s1 /CLONE=UI-R-CA1-big-d-05-0-UI /FEA=EST /CNT=12 /TID=Rn.26779.1 /TIER=Stack /STK=11 /UG=Rn.26779 /UG_TITLE=ESTs, Moderately similar to S43930 U2af binding protein homolog - mouse (M.musculus) BF404554 zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1 Zrsr1 498425 NM_001017504 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389875_at AI227951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227951 /DB_XREF=gi:3811838 /DB_XREF=EST224646 /CLONE=RBRCO01 /FEA=EST /CNT=12 /TID=Rn.8392.1 /TIER=Stack /STK=11 /UG=Rn.8392 /UG_TITLE=ESTs, Weakly similar to RNFB_MOUSE RING FINGER PROTEIN 12 (LIM DOMAIN INTERACTING RING FINGER PROTEIN) (RING FINGER LIM DOMAIN-BINDING PROTEIN) (R-LIM) (M.musculus) AI227951 Zinc and ring finger 1 Znrf1 362367 NM_001108628 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389876_at BE111167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111167 /DB_XREF=gi:8503272 /DB_XREF=UI-R-BJ1-auv-d-06-0-UI.s1 /CLONE=UI-R-BJ1-auv-d-06-0-UI /FEA=EST /CNT=12 /TID=Rn.81198.2 /TIER=Stack /STK=11 /UG=Rn.81198 /UG_TITLE=Rattus norvegicus CaM-kinase II inhibitor alpha mRNA, complete cds BE111167 Calcium/calmodulin-dependent protein kinase II inhibitor 1 Camk2n1 287005 NM_173337 0007268 // synaptic transmission // inferred by curator /// 0042326 // negative regulation of phosphorylation // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0014069 // postsynaptic density // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004860 // protein kinase inhibitor activity // not recorded /// 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0008427 // calcium-dependent protein kinase inhibitor activity // inferred from direct assay /// 0019901 // protein kinase binding // inferred from direct assay /// 0019901 // protein kinase binding // inferred from physical interaction 1389877_at BE105768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105768 /DB_XREF=gi:8497834 /DB_XREF=UI-R-BO1-asi-d-06-0-UI.s1 /CLONE=UI-R-BO1-asi-d-06-0-UI /FEA=EST /CNT=12 /TID=Rn.11816.1 /TIER=Stack /STK=11 /UG=Rn.11816 /UG_TITLE=ESTs, Highly similar to FXC1 MOUSE FORKHEAD BOX PROTEIN C1 (M.musculus) BE105768 Forkhead box C1 rCG_44068 364706 XM_002725235 /// XM_002728469 1389878_at BI296752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296752 /DB_XREF=gi:14961493 /DB_XREF=UI-R-CV2-cgv-h-07-0-UI.s1 /CLONE=UI-R-CV2-cgv-h-07-0-UI /FEA=EST /CNT=11 /TID=Rn.73469.1 /TIER=Stack /STK=11 /UG=Rn.73469 /UG_TITLE=ESTs BI296752 1389879_at AA875516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875516 /DB_XREF=gi:4231394 /DB_XREF=UI-R-E0-ct-d-09-0-UI.s1 /CLONE=UI-R-E0-ct-d-09-0-UI /FEA=EST /CNT=11 /TID=Rn.24206.1 /TIER=Stack /STK=11 /UG=Rn.24206 /LL=25161 /UG_GENE=Sp3 /UG_TITLE=Trans-acting transcription factor 3 AA875516 Sp3 transcription factor Sp3 367846 XM_002726189 /// XM_002729171 0001503 // ossification // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0001779 // natural killer cell differentiation // not recorded /// 0001829 // trophectodermal cell differentiation // not recorded /// 0001889 // liver development // not recorded /// 0001892 // embryonic placenta development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030183 // B cell differentiation // not recorded /// 0030217 // T cell differentiation // not recorded /// 0030218 // erythrocyte differentiation // not recorded /// 0030219 // megakaryocyte differentiation // not recorded /// 0030224 // monocyte differentiation // not recorded /// 0030324 // lung development // not recorded /// 0030851 // granulocyte differentiation // not recorded /// 0043353 // enucleate erythrocyte differentiation // not recorded /// 0048596 // embryonic camera-type eye morphogenesis // not recorded /// 0048706 // embryonic skeletal system development // not recorded /// 0060136 // embryonic process involved in female pregnancy // not recorded /// 0060216 // definitive hemopoiesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003690 // double-stranded DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded 1389880_at AW525701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525701 /DB_XREF=gi:7168086 /DB_XREF=UI-R-BJ0p-aiu-h-02-0-UI.s1 /CLONE=UI-R-BJ0p-aiu-h-02-0-UI /FEA=EST /CNT=11 /TID=Rn.22622.1 /TIER=Stack /STK=11 /UG=Rn.22622 /UG_TITLE=ESTs, Weakly similar to HN3G RAT HEPATOCYTE NUCLEAR FACTOR 3-GAMMA (R.norvegicus) AW525701 Forkhead box K2 Foxk2 303753 NM_001107075 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0000287 // magnesium ion binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1389881_at BI296516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296516 /DB_XREF=gi:14961016 /DB_XREF=UI-R-CV2-cgs-b-07-0-UI.s1 /CLONE=UI-R-CV2-cgs-b-07-0-UI /FEA=EST /CNT=11 /TID=Rn.79821.1 /TIER=Stack /STK=11 /UG=Rn.79821 /UG_TITLE=ESTs BI296516 1389882_at AI180270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180270 /DB_XREF=gi:3730908 /DB_XREF=EST224013 /CLONE=RSPCS66 /FEA=EST /CNT=46 /TID=Rn.3255.1 /TIER=Stack /STK=10 /UG=Rn.3255 /UG_TITLE=ESTs, Moderately similar to IER5 (M.musculus) AI180270 immediate early response 5 Ier5 498256 NM_001025137 1389883_at BF284719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284719 /DB_XREF=gi:11215789 /DB_XREF=EST449310 /CLONE=RGIEV34 /FEA=EST /CNT=26 /TID=Rn.7349.1 /TIER=Stack /STK=10 /UG=Rn.7349 /UG_TITLE=ESTs BF284719 similar to 4930438D12Rik protein RGD1563224 500874 NM_001100995 1389884_at AI410890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410890 /DB_XREF=gi:4254394 /DB_XREF=EST239183 /CLONE=RHECY71 /FEA=EST /CNT=16 /TID=Rn.22455.2 /TIER=Stack /STK=10 /UG=Rn.22455 /UG_TITLE=ESTs AI410890 coiled-coil domain containing 88B Ccdc88b 361715 NM_001108517 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1389885_at BI294855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294855 /DB_XREF=gi:14957716 /DB_XREF=UI-R-DK0-cec-h-10-0-UI.s1 /CLONE=UI-R-DK0-cec-h-10-0-UI /FEA=EST /CNT=14 /TID=Rn.7101.1 /TIER=Stack /STK=10 /UG=Rn.7101 /UG_TITLE=ESTs, Weakly similar to CYSTEINE-RICH PROTEIN 1 (R.norvegicus) BI294855 LIM domain containing 2 Limd2 360646 NM_001025715 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389886_at AI406942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406942 /DB_XREF=gi:4250446 /DB_XREF=EST235230 /CLONE=ROVDU90 /FEA=EST /CNT=13 /TID=Rn.9491.1 /TIER=Stack /STK=10 /UG=Rn.9491 /UG_TITLE=ESTs AI406942 1389887_at BF284592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284592 /DB_XREF=gi:11215662 /DB_XREF=EST449183 /CLONE=RGIES60 /FEA=EST /CNT=12 /TID=Rn.22604.1 /TIER=Stack /STK=10 /UG=Rn.22604 /UG_TITLE=ESTs BF284592 1389888_at AA964142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964142 /DB_XREF=gi:4279018 /DB_XREF=UI-R-E1-gl-f-04-0-UI.s1 /CLONE=UI-R-E1-gl-f-04-0-UI /FEA=EST /CNT=12 /TID=Rn.22189.1 /TIER=Stack /STK=10 /UG=Rn.22189 /UG_TITLE=ESTs, Weakly similar to T15142 hypothetical protein T28F2.6 - Caenorhabditis elegans (C.elegans) AA964142 lipoyl(octanoyl) transferase 2 (putative) Lipt2 365314 NM_001108917 0006464 // protein modification process // inferred from electronic annotation /// 0009107 // lipoate biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016415 // octanoyltransferase activity // inferred from electronic annotation 1389889_at AI412986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412986 /DB_XREF=gi:4256490 /DB_XREF=EST241286 /CLONE=RBREC92 /FEA=EST /CNT=12 /TID=Rn.37536.1 /TIER=Stack /STK=10 /UG=Rn.37536 /UG_TITLE=ESTs, Weakly similar to YNA4_CAEEL HYPOTHETICAL 91.0 KD PROTEIN PAR2.4 IN CHROMOSOME III (C.elegans) AI412986 similar to mKIAA1402 protein RGD1306404 296733 NM_001106574 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1389890_at BI288731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288731 /DB_XREF=gi:14945599 /DB_XREF=UI-R-DK0-cde-c-09-0-UI.s1 /CLONE=UI-R-DK0-cde-c-09-0-UI /FEA=EST /CNT=11 /TID=Rn.30682.1 /TIER=Stack /STK=10 /UG=Rn.30682 /UG_TITLE=ESTs BI288731 genetic suppressor element 1 Gse1 307913 XM_001078877 /// XM_226533 0005515 // protein binding // not recorded 1389891_at BM391350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391350 /DB_XREF=gi:18191403 /DB_XREF=UI-R-DY0-ckq-d-18-0-UI.s1 /CLONE=UI-R-DY0-ckq-d-18-0-UI /FEA=EST /CNT=11 /TID=Rn.45835.1 /TIER=Stack /STK=10 /UG=Rn.45835 /UG_TITLE=ESTs, Weakly similar to COLLAGEN ALPHA 1(XI) CHAIN (R.norvegicus) BM391350 collagen, type XI, alpha 2 Col11a2 294279 NM_212528 0001501 // skeletal system development // not recorded /// 0001501 // skeletal system development // traceable author statement /// 0001503 // ossification // inferred from direct assay /// 0001894 // tissue homeostasis // not recorded /// 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from direct assay /// 0002062 // chondrocyte differentiation // not recorded /// 0002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0002517 // T cell tolerance induction // inferred from mutant phenotype /// 0002657 // positive regulation of tolerance induction to nonself antigen // inferred from mutant phenotype /// 0006955 // immune response // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0030199 // collagen fibril organization // not recorded /// 0045953 // negative regulation of natural killer cell mediated cytotoxicity // inferred from mutant phenotype /// 0048705 // skeletal system morphogenesis // not recorded /// 0051216 // cartilage development // not recorded /// 0060021 // palate development // not recorded /// 0060023 // soft palate development // not recorded 0005581 // collagen // inferred from electronic annotation /// 0005581 // collagen // not recorded /// 0005592 // collagen type XI // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0030881 // beta-2-microglobulin binding // inferred from physical interaction /// 0042277 // peptide binding // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1389892_at AI575110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575110 /DB_XREF=gi:4559486 /DB_XREF=UI-R-G0-ul-e-10-0-UI.s1 /CLONE=UI-R-G0-ul-e-10-0-UI /FEA=EST /CNT=11 /TID=Rn.35474.1 /TIER=Stack /STK=10 /UG=Rn.35474 /UG_TITLE=ESTs, Weakly similar to TRX2_HUMAN TRITHORAX HOMOLOG 2 (MIXED LINEAGE LEUKEMIA GENE HOMOLOG 2 PROTEIN) (H.sapiens) AI575110 Similar to RIKEN cDNA 1700025G04 gene RGD1309104 289084 NM_001105959 1389893_at AI408069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408069 /DB_XREF=gi:4251573 /DB_XREF=EST236359 /CLONE=RPLDM03 /FEA=EST /CNT=11 /TID=Rn.8534.1 /TIER=Stack /STK=10 /UG=Rn.8534 /UG_TITLE=ESTs AI408069 similar to RIKEN cDNA B630019K06 RGD1560784 363449 XM_001054784 /// XM_343770 1389894_at BF399476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399476 /DB_XREF=gi:11384484 /DB_XREF=UI-R-CA1-bjb-p-13-0-UI.s1 /CLONE=UI-R-CA1-bjb-p-13-0-UI /FEA=EST /CNT=10 /TID=Rn.63402.1 /TIER=Stack /STK=10 /UG=Rn.63402 /UG_TITLE=ESTs, Highly similar to S54293 regulator protein p122-RhoGAP - rat (R.norvegicus) BF399476 deleted in liver cancer 1 Dlc1 58834 NM_001127446 0001843 // neural tube closure // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0007010 // cytoskeleton organization // inferred from direct assay /// 0007010 // cytoskeleton organization // non-traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007202 // activation of phospholipase C activity // inferred from direct assay /// 0007266 // Rho protein signal transduction // non-traceable author statement /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0021575 // hindbrain morphogenesis // inferred from electronic annotation /// 0021575 // hindbrain morphogenesis // not recorded /// 0030036 // actin cytoskeleton organization // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0032956 // regulation of actin cytoskeleton organization // inferred from electronic annotation /// 0032956 // regulation of actin cytoskeleton organization // not recorded /// 0035024 // negative regulation of Rho protein signal transduction // inferred from electronic annotation /// 0035024 // negative regulation of Rho protein signal transduction // not recorded /// 0035307 // positive regulation of protein dephosphorylation // inferred from electronic annotation /// 0035307 // positive regulation of protein dephosphorylation // not recorded /// 0048041 // focal adhesion assembly // inferred from electronic annotation /// 0048041 // focal adhesion assembly // not recorded /// 0051497 // negative regulation of stress fiber assembly // inferred from electronic annotation /// 0051497 // negative regulation of stress fiber assembly // not recorded 0001725 // stress fiber // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from mutant phenotype /// 0005884 // actin filament // inferred from direct assay /// 0005901 // caveola // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0005925 // focal adhesion // inferred from direct assay /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005100 // Rho GTPase activator activity // inferred from direct assay /// 0005100 // Rho GTPase activator activity // not recorded /// 0005100 // Rho GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017166 // vinculin binding // inferred from physical interaction /// 0030675 // Rac GTPase activator activity // not recorded /// 0042169 // SH2 domain binding // inferred from electronic annotation /// 0042169 // SH2 domain binding // not recorded /// 0043274 // phospholipase binding // inferred from physical interaction 1389895_at BG376886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376886 /DB_XREF=gi:13301358 /DB_XREF=UI-R-CA1-bli-e-06-0-UI.s1 /CLONE=UI-R-CA1-bli-e-06-0-UI /FEA=EST /CNT=10 /TID=Rn.63658.1 /TIER=Stack /STK=10 /UG=Rn.63658 /UG_TITLE=ESTs BG376886 1389896_at AI232217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232217 /DB_XREF=gi:3816097 /DB_XREF=EST228905 /CLONE=RKIBY53 /FEA=EST /CNT=10 /TID=Rn.22341.1 /TIER=Stack /STK=10 /UG=Rn.22341 /UG_TITLE=ESTs AI232217 1389897_at BE110772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110772 /DB_XREF=gi:8502842 /DB_XREF=UI-R-BJ1-avd-d-08-0-UI.s1 /CLONE=UI-R-BJ1-avd-d-08-0-UI /FEA=EST /CNT=10 /TID=Rn.1921.3 /TIER=Stack /STK=10 /UG=Rn.1921 /UG_TITLE=ESTs, Highly similar to COP9 complex subunit 7a (M.musculus) BE110772 COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis) Cops7a 312710 NM_001047098 /// NM_001164091 1389898_at AA944170 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944170 /DB_XREF=gi:3104086 /DB_XREF=EST199669 /CLONE=REMAD22 /FEA=EST /CNT=10 /TID=Rn.8639.1 /TIER=Stack /STK=10 /UG=Rn.8639 /UG_TITLE=ESTs, Highly similar to B4G5_MOUSE Beta-1,4-galactosyltransferase 5 (Beta-1,4-GalTase 5) (Beta4Gal-T5) (b4Gal-T5) (UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 5) (UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 5) (Beta-1,4-GalT II) (M.musculus) AA944170 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5 B4galt5 362275 NM_001108608 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1389899_at BE102426 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102426 /DB_XREF=gi:8494525 /DB_XREF=UI-R-BT1-aqm-e-04-0-UI.s1 /CLONE=UI-R-BT1-aqm-e-04-0-UI /FEA=EST /CNT=10 /TID=Rn.46827.1 /TIER=Stack /STK=10 /UG=Rn.46827 /UG_TITLE=ESTs, Highly similar to A53437 poliovirus receptor mPVR - mouse (M.musculus) BE102426 Poliovirus receptor-related 2 Pvrl2 308417 NM_001012064 0002860 // positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target // inferred from electronic annotation /// 0002860 // positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target // not recorded /// 0002891 // positive regulation of immunoglobulin mediated immune response // inferred from electronic annotation /// 0002891 // positive regulation of immunoglobulin mediated immune response // not recorded /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // not recorded /// 0007286 // spermatid development // inferred from electronic annotation /// 0007286 // spermatid development // not recorded /// 0019064 // viral envelope fusion with host membrane // inferred from electronic annotation /// 0019064 // viral envelope fusion with host membrane // not recorded /// 0033005 // positive regulation of mast cell activation // inferred from electronic annotation /// 0033005 // positive regulation of mast cell activation // not recorded /// 0042271 // susceptibility to natural killer cell mediated cytotoxicity // inferred from electronic annotation /// 0042271 // susceptibility to natural killer cell mediated cytotoxicity // not recorded /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // not recorded /// 0045954 // positive regulation of natural killer cell mediated cytotoxicity // inferred from electronic annotation /// 0046814 // virion attachment, binding of host cell surface coreceptor // inferred from electronic annotation /// 0046814 // virion attachment, binding of host cell surface coreceptor // not recorded /// 0051856 // adhesion to symbiont // inferred from electronic annotation /// 0051856 // adhesion to symbiont // not recorded /// 0060370 // susceptibility to T cell mediated cytotoxicity // inferred from electronic annotation /// 0060370 // susceptibility to T cell mediated cytotoxicity // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0005915 // zonula adherens // inferred from electronic annotation /// 0005915 // zonula adherens // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0050839 // cell adhesion molecule binding // inferred from electronic annotation /// 0050839 // cell adhesion molecule binding // not recorded 1389900_at BF394115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394115 /DB_XREF=gi:11378979 /DB_XREF=UI-R-CA0-bgz-f-02-0-UI.s1 /CLONE=UI-R-CA0-bgz-f-02-0-UI /FEA=EST /CNT=10 /TID=Rn.51811.1 /TIER=Stack /STK=10 /UG=Rn.51811 /UG_TITLE=ESTs BF394115 glutamate receptor, ionotropic, N-methyl D-aspartate 1 Grin1 24408 NM_017010 0001661 // conditioned taste aversion // not recorded /// 0001661 // conditioned taste aversion // inferred from electronic annotation /// 0001964 // startle response // not recorded /// 0001964 // startle response // inferred from electronic annotation /// 0001967 // suckling behavior // not recorded /// 0001967 // suckling behavior // inferred from electronic annotation /// 0001975 // response to amphetamine // not recorded /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006812 // cation transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007585 // respiratory gaseous exchange // not recorded /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007611 // learning or memory // not recorded /// 0007611 // learning or memory // traceable author statement /// 0007611 // learning or memory // inferred from electronic annotation /// 0007611 // learning or memory // inferred from mutant phenotype /// 0007612 // learning // not recorded /// 0007612 // learning // inferred from electronic annotation /// 0007613 // memory // not recorded /// 0007613 // memory // inferred from electronic annotation /// 0007616 // long-term memory // not recorded /// 0007616 // long-term memory // inferred from electronic annotation /// 0008306 // associative learning // not recorded /// 0008306 // associative learning // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008355 // olfactory learning // not recorded /// 0008355 // olfactory learning // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0008542 // visual learning // inferred from electronic annotation /// 0010646 // regulation of cell communication // not recorded /// 0010646 // regulation of cell communication // inferred from electronic annotation /// 0010942 // positive regulation of cell death // inferred from direct assay /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014075 // response to amine stimulus // inferred from expression pattern /// 0019233 // sensory perception of pain // not recorded /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0021586 // pons maturation // not recorded /// 0021586 // pons maturation // inferred from electronic annotation /// 0021987 // cerebral cortex development // not recorded /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0035176 // social behavior // not recorded /// 0035176 // social behavior // inferred from electronic annotation /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from direct assay /// 0035235 // ionotropic glutamate receptor signaling pathway // not recorded /// 0035235 // ionotropic glutamate receptor signaling pathway // inferred from electronic annotation /// 0035249 // synaptic transmission, glutamatergic // not recorded /// 0035249 // synaptic transmission, glutamatergic // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043278 // response to morphine // not recorded /// 0043278 // response to morphine // inferred from electronic annotation /// 0043523 // regulation of neuron apoptosis // not recorded /// 0043523 // regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043576 // regulation of respiratory gaseous exchange // not recorded /// 0043576 // regulation of respiratory gaseous exchange // inferred from electronic annotation /// 0045471 // response to ethanol // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // not recorded /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation /// 0048168 // regulation of neuronal synaptic plasticity // not recorded /// 0048168 // regulation of neuronal synaptic plasticity // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // not recorded /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from direct assay /// 0048814 // regulation of dendrite morphogenesis // not recorded /// 0048814 // regulation of dendrite morphogenesis // inferred from electronic annotation /// 0050770 // regulation of axonogenesis // not recorded /// 0050770 // regulation of axonogenesis // inferred from electronic annotation /// 0050905 // neuromuscular process // not recorded /// 0050905 // neuromuscular process // inferred from electronic annotation /// 0051592 // response to calcium ion // inferred from expression pattern /// 0051963 // regulation of synaptogenesis // not recorded /// 0051963 // regulation of synaptogenesis // inferred from electronic annotation /// 0055074 // calcium ion homeostasis // not recorded /// 0055074 // calcium ion homeostasis // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060134 // prepulse inhibition // not recorded /// 0060134 // prepulse inhibition // inferred from electronic annotation /// 0060179 // male mating behavior // not recorded /// 0060179 // male mating behavior // inferred from electronic annotation /// 0060992 // response to fungicide // inferred from expression pattern /// 0070588 // calcium ion transmembrane transport // not recorded /// 0071287 // cellular response to manganese ion // inferred from expression pattern /// 0071445 // cellular response to protein stimulus // inferred from expression pattern 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // not recorded /// 0008021 // synaptic vesicle // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // not recorded /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016600 // flotillin complex // inferred from physical interaction /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // inferred from direct assay /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // not recorded /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // traceable author statement /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030288 // outer membrane-bounded periplasmic space // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0043083 // synaptic cleft // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043197 // dendritic spine // not recorded /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0045211 // postsynaptic membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from direct assay /// 0004970 // ionotropic glutamate receptor activity // traceable author statement /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from direct assay /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from genetic interaction /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from mutant phenotype /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // not recorded /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // traceable author statement /// 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from mutant phenotype /// 0005261 // cation channel activity // not recorded /// 0005261 // cation channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // inferred from direct assay /// 0005262 // calcium channel activity // not recorded /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0016594 // glycine binding // inferred from direct assay /// 0016594 // glycine binding // not recorded /// 0016594 // glycine binding // traceable author statement /// 0016595 // glutamate binding // inferred from direct assay /// 0016595 // glutamate binding // not recorded /// 0022843 // voltage-gated cation channel activity // inferred from mutant phenotype /// 0035254 // glutamate receptor binding // inferred from physical interaction /// 0042165 // neurotransmitter binding // inferred from direct assay 1389901_at BI298083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298083 /DB_XREF=gi:14974363 /DB_XREF=UI-R-CV2-chf-b-10-0-UI.s1 /CLONE=UI-R-CV2-chf-b-10-0-UI /FEA=EST /CNT=10 /TID=Rn.76749.1 /TIER=Stack /STK=10 /UG=Rn.76749 /UG_TITLE=ESTs, Highly similar to PRESYNAPTIC DENSITY PROTEIN 95 (R.norvegicus) BI298083 discs, large homolog 4 (Drosophila) Dlg4 29495 NM_019621 0006950 // response to stress // non-traceable author statement /// 0016188 // synaptic vesicle maturation // inferred from electronic annotation /// 0016188 // synaptic vesicle maturation // not recorded /// 0045161 // neuronal ion channel clustering // traceable author statement /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0014069 // postsynaptic density // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0019717 // synaptosome // not recorded /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030666 // endocytic vesicle membrane // not recorded /// 0030863 // cortical cytoskeleton // not recorded /// 0031234 // extrinsic to internal side of plasma membrane // inferred from electronic annotation /// 0031234 // extrinsic to internal side of plasma membrane // not recorded /// 0032281 // alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex // inferred from electronic annotation /// 0032281 // alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex // not recorded /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0045211 // postsynaptic membrane // not recorded /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // not recorded /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction 1389902_at BI285090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285090 /DB_XREF=gi:14938388 /DB_XREF=UI-R-DB0-byw-a-11-0-UI.s1 /CLONE=UI-R-DB0-byw-a-11-0-UI /FEA=EST /CNT=18 /TID=Rn.12102.1 /TIER=Stack /STK=10 /UG=Rn.12102 /UG_TITLE=ESTs, Weakly similar to YJ95_CAEEL HYPOTHETICAL 52.8 KD PROTEIN T05E11.5 IN CHROMOSOME IV (C.elegans) BI285090 histocompatibility 13 H13 311545 NM_001107789 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389903_at AA799616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799616 /DB_XREF=gi:2862571 /DB_XREF=EST189113 /CLONE=RHEAD20 /FEA=EST /CNT=34 /TID=Rn.4248.1 /TIER=Stack /STK=9 /UG=Rn.4248 /UG_TITLE=ESTs, Moderately similar to C211_HUMAN PUTATIVE SURFACE GLYCOPROTEIN C21ORF1 PRECURSOR (H.sapiens) AA799616 pituitary tumor-transforming 1 interacting protein Pttg1ip 365548 NM_001013238 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006606 // protein import into nucleus // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1389904_at AI171529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171529 /DB_XREF=gi:3711569 /DB_XREF=EST217493 /CLONE=RMUBM17 /FEA=EST /CNT=43 /TID=Rn.2909.1 /TIER=Stack /STK=9 /UG=Rn.2909 /UG_TITLE=ESTs AI171529 1389905_at AI175728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175728 /DB_XREF=gi:4134813 /DB_XREF=EST219293 /CLONE=ROVBE49 /FEA=EST /CNT=17 /TID=Rn.6919.1 /TIER=Stack /STK=9 /UG=Rn.6919 /UG_TITLE=ESTs AI175728 1389906_at AW530769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530769 /DB_XREF=gi:7173183 /DB_XREF=UI-R-C4-alb-c-07-0-UI.s1 /CLONE=UI-R-C4-alb-c-07-0-UI /FEA=EST /CNT=17 /TID=Rn.21071.1 /TIER=Stack /STK=9 /UG=Rn.21071 /UG_TITLE=ESTs AW530769 farnesyl diphosphate farnesyl transferase 1 Fdft1 29580 NM_019238 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from mutant phenotype /// 0006695 // cholesterol biosynthetic process // traceable author statement /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0045338 // farnesyl diphosphate metabolic process // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004310 // farnesyl-diphosphate farnesyltransferase activity // inferred from direct assay /// 0004310 // farnesyl-diphosphate farnesyltransferase activity // inferred from mutant phenotype /// 0004310 // farnesyl-diphosphate farnesyltransferase activity // not recorded /// 0004310 // farnesyl-diphosphate farnesyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1389907_at AI169317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169317 /DB_XREF=gi:3705625 /DB_XREF=EST215152 /CLONE=RKIBQ14 /FEA=EST /CNT=16 /TID=Rn.8401.1 /TIER=Stack /STK=9 /UG=Rn.8401 /UG_TITLE=ESTs, Weakly similar to C43H8.1.p (Caenorhabditis elegans) (C.elegans) AI169317 zinc finger and BTB domain containing 8 opposite strand Zbtb8os 297885 XR_085843 /// XR_086264 1389908_at BE107167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107167 /DB_XREF=gi:8499272 /DB_XREF=UI-R-BS1-ayq-f-04-0-UI.s1 /CLONE=UI-R-BS1-ayq-f-04-0-UI /FEA=EST /CNT=15 /TID=Rn.36694.1 /TIER=Stack /STK=9 /UG=Rn.36694 /UG_TITLE=ESTs BE107167 1389909_at AI137280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137280 /DB_XREF=gi:3638057 /DB_XREF=UI-R-C2p-ok-h-05-0-UI.s1 /CLONE=UI-R-C2p-ok-h-05-0-UI /FEA=EST /CNT=13 /TID=Rn.22109.1 /TIER=Stack /STK=9 /UG=Rn.22109 /UG_TITLE=ESTs AI137280 Nuclear receptor coactivator 1 Ncoa1 313929 NM_001108012 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0021549 // cerebellum development // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from mutant phenotype /// 0032526 // response to retinoic acid // inferred from mutant phenotype /// 0032570 // response to progesterone stimulus // inferred from mutant phenotype /// 0032870 // cellular response to hormone stimulus // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060206 // estrous cycle phase // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0035257 // nuclear hormone receptor binding // inferred from electronic annotation 1389910_at BM390101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390101 /DB_XREF=gi:18190154 /DB_XREF=UI-R-CN1-cjp-b-08-0-UI.s1 /CLONE=UI-R-CN1-cjp-b-08-0-UI /FEA=EST /CNT=18 /TID=Rn.8667.1 /TIER=Stack /STK=9 /UG=Rn.8667 /UG_TITLE=ESTs BM390101 similar to chromosome 20 open reading frame 30; HSPC274 protein RGD1307399 681315 NM_001048043 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1389911_at BM389126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389126 /DB_XREF=gi:18189179 /DB_XREF=UI-R-DZ0-cko-e-21-0-UI.s1 /CLONE=UI-R-DZ0-cko-e-21-0-UI /FEA=EST /CNT=12 /TID=Rn.64557.1 /TIER=Stack /STK=9 /UG=Rn.64557 /UG_TITLE=ESTs BM389126 meteorin, glial cell differentiation regulator-like Metrnl 316842 NM_001014104 0005576 // extracellular region // inferred from electronic annotation 1389912_at BI289922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289922 /DB_XREF=gi:14947990 /DB_XREF=UI-R-DK0-cfp-g-11-0-UI.s1 /CLONE=UI-R-DK0-cfp-g-11-0-UI /FEA=EST /CNT=12 /TID=Rn.39333.2 /TIER=Stack /STK=9 /UG=Rn.39333 /LL=60334 /UG_GENE=Ensa /UG_TITLE=endosulfine alpha BI289922 endosulfine alpha Ensa 60334 NM_001033974 /// NM_021842 0009749 // response to glucose stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0015459 // potassium channel regulator activity // non-traceable author statement 1389913_at BI276990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276990 /DB_XREF=gi:14922434 /DB_XREF=UI-R-CW0-bxo-h-07-0-UI.s1 /CLONE=UI-R-CW0-bxo-h-07-0-UI /FEA=EST /CNT=13 /TID=Rn.28305.1 /TIER=Stack /STK=9 /UG=Rn.28305 /UG_TITLE=ESTs BI276990 1389914_at AI535202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535202 /DB_XREF=gi:4449337 /DB_XREF=UI-R-C3-ta-e-03-0-UI.s1 /CLONE=UI-R-C3-ta-e-03-0-UI /FEA=EST /CNT=12 /TID=Rn.37154.1 /TIER=Stack /STK=9 /UG=Rn.37154 /UG_TITLE=ESTs, Weakly similar to A49129 neuroblast cell lineage zinc finger protein ming - fruit fly (D.melanogaster) AI535202 similar to novel protein RGD1563533 313713 XM_002726658 /// XM_002729564 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1389915_at AW520813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520813 /DB_XREF=gi:7163191 /DB_XREF=UI-R-BJ0p-agh-g-09-0-UI.s1 /CLONE=UI-R-BJ0p-agh-g-09-0-UI /FEA=EST /CNT=11 /TID=Rn.23143.2 /TIER=Stack /STK=9 /UG=Rn.23143 /UG_TITLE=ESTs AW520813 Kelch-like 22 (Drosophila) Klhl22 303792 NM_001107079 0051301 // cell division // not recorded /// 0051301 // cell division // inferred from sequence or structural similarity 0031463 // Cul3-RING ubiquitin ligase complex // not recorded /// 0031463 // Cul3-RING ubiquitin ligase complex // inferred from sequence or structural similarity 0005515 // protein binding // inferred from electronic annotation 1389916_at AI574953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI574953 /DB_XREF=gi:4544949 /DB_XREF=UI-R-G0-ug-c-02-0-UI.s1 /CLONE=UI-R-G0-ug-c-02-0-UI /FEA=EST /CNT=11 /TID=Rn.8401.2 /TIER=Stack /STK=9 /UG=Rn.8401 /UG_TITLE=ESTs, Weakly similar to C43H8.1.p (Caenorhabditis elegans) (C.elegans) AI574953 1389917_at BF284375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284375 /DB_XREF=gi:11215445 /DB_XREF=EST448966 /CLONE=RGIEO88 /FEA=EST /CNT=11 /TID=Rn.22437.1 /TIER=Stack /STK=9 /UG=Rn.22437 /UG_TITLE=ESTs, Weakly similar to B39066 proline-rich protein 15 - rat (R.norvegicus) BF284375 Male-specific lethal 1 homolog (Drosophila) Msl1 303514 NM_001107048 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 1389918_at BM391364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391364 /DB_XREF=gi:18191417 /DB_XREF=UI-R-DY0-ckq-h-08-0-UI.s1 /CLONE=UI-R-DY0-ckq-h-08-0-UI /FEA=EST /CNT=11 /TID=Rn.18966.1 /TIER=Stack /STK=9 /UG=Rn.18966 /UG_TITLE=ESTs, Highly similar to T13078 KIAA0992 protein (H.sapiens) BM391364 palladin LOC100360205 100360205 XM_002728399 1389919_at BI296756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296756 /DB_XREF=gi:14961501 /DB_XREF=UI-R-CV2-cgv-h-11-0-UI.s1 /CLONE=UI-R-CV2-cgv-h-11-0-UI /FEA=EST /CNT=13 /TID=Rn.64456.1 /TIER=Stack /STK=9 /UG=Rn.64456 /UG_TITLE=ESTs, Weakly similar to T21D12.4.p (Caenorhabditis elegans) (C.elegans) BI296756 parvin, beta Parvb 362973 NM_001134780 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded 1389920_at BF414325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414325 /DB_XREF=gi:11402355 /DB_XREF=UI-R-BJ2-bop-e-12-0-UI.s1 /CLONE=UI-R-BJ2-bop-e-12-0-UI /FEA=EST /CNT=11 /TID=Rn.39153.2 /TIER=Stack /STK=9 /UG=Rn.39153 /UG_TITLE=ESTs, Weakly similar to zinc-finger protein 94 (R.norvegicus) BF414325 Zinc finger protein 787 Znf787 365176 NM_001108904 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1389921_at BF404078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404078 /DB_XREF=gi:11392053 /DB_XREF=UI-R-CA1-biw-f-19-0-UI.s1 /CLONE=UI-R-CA1-biw-f-19-0-UI /FEA=EST /CNT=10 /TID=Rn.28912.2 /TIER=Stack /STK=9 /UG=Rn.28912 /LL=79115 /UG_GENE=Evl /UG_TITLE=RNB6 BF404078 Enah/Vasp-like Evl 79115 NM_024147 0006928 // cellular component movement // non-traceable author statement /// 0007411 // axon guidance // non-traceable author statement /// 0007417 // central nervous system development // non-traceable author statement /// 0007417 // central nervous system development // traceable author statement /// 0008154 // actin polymerization or depolymerization // not recorded /// 0008154 // actin polymerization or depolymerization // inferred from sequence or structural similarity 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // inferred from sequence or structural similarity /// 0030027 // lamellipodium // not recorded /// 0030027 // lamellipodium // inferred from sequence or structural similarity /// 0030027 // lamellipodium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005522 // profilin binding // not recorded /// 0017124 // SH3 domain binding // not recorded /// 0017124 // SH3 domain binding // inferred from sequence or structural similarity /// 0017124 // SH3 domain binding // inferred from electronic annotation 1389922_at AA891362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891362 /DB_XREF=gi:3018241 /DB_XREF=EST195165 /CLONE=RHEAT10 /FEA=EST /CNT=10 /TID=Rn.17172.2 /TIER=Stack /STK=9 /UG=Rn.17172 /LL=113965 /UG_GENE=Hadhsc /UG_TITLE=hydroxylacyl-Coenzyme A dehydrogenase, short chain AA891362 Hydroxyacyl-Coenzyme A dehydrogenase Hadh 113965 NM_057186 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from mutant phenotype /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0014823 // response to activity // inferred from direct assay /// 0032868 // response to insulin stimulus // inferred from direct assay /// 0042493 // response to drug // inferred from direct assay /// 0046676 // negative regulation of insulin secretion // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // inferred from mutant phenotype /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // not recorded /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation /// 0070403 // NAD binding // inferred from electronic annotation 1389923_at BE104474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104474 /DB_XREF=gi:8496539 /DB_XREF=UI-R-BX0-aro-h-09-0-UI.s1 /CLONE=UI-R-BX0-aro-h-09-0-UI /FEA=EST /CNT=10 /TID=Rn.48897.1 /TIER=Stack /STK=9 /UG=Rn.48897 /UG_TITLE=ESTs, Weakly similar to C05C8.6.p (Caenorhabditis elegans) (C.elegans) BE104474 BTB (POZ) domain containing 9 LOC100361081 100361081 XM_002728927 0007155 // cell adhesion // inferred from electronic annotation 1389924_at BF283402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283402 /DB_XREF=gi:11214472 /DB_XREF=EST447993 /CLONE=RGIEB51 /FEA=EST /CNT=10 /TID=Rn.25905.3 /TIER=Stack /STK=9 /UG=Rn.25905 /LL=25306 /UG_GENE=Cpd /UG_TITLE=Carboxypeptidase D precursor BF283402 Carboxypeptidase D Cpd 25306 NM_012836 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // inferred from sequence or structural similarity /// 0071352 // cellular response to interleukin-2 // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from electronic annotation 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activity // inferred from sequence or structural similarity /// 0004185 // serine-type carboxypeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389925_at BE100162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100162 /DB_XREF=gi:8492050 /DB_XREF=UI-R-BJ1-ats-d-10-0-UI.s1 /CLONE=UI-R-BJ1-ats-d-10-0-UI /FEA=EST /CNT=10 /TID=Rn.38676.2 /TIER=Stack /STK=9 /UG=Rn.38676 /UG_TITLE=ESTs, Weakly similar to T13387 hypothetical protein 115C2.8 - fruit fly (Drosophila melanogaster) (D.melanogaster) BE100162 1389926_at AI764477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764477 /DB_XREF=gi:5210370 /DB_XREF=UI-R-Y0-abj-h-05-0-UI.s1 /CLONE=UI-R-Y0-abj-h-05-0-UI /FEA=EST /CNT=10 /TID=Rn.39344.1 /TIER=Stack /STK=9 /UG=Rn.39344 /UG_TITLE=ESTs, Weakly similar to T13804 shs protein - fruit fly (D.melanogaster) AI764477 nemo like kinase /// similar to nemo like kinase Nlk /// RGD1561440 363942 /// 497961 NM_001191924 /// XM_001061954 /// XM_001080888 /// XM_344122 /// XM_573152 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007243 // intracellular protein kinase cascade // not recorded /// 0018107 // peptidyl-threonine phosphorylation // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0033136 // serine phosphorylation of STAT3 protein // not recorded /// 0045449 // regulation of transcription // not recorded /// 0046777 // protein autophosphorylation // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004707 // MAP kinase activity // inferred from electronic annotation /// 0004707 // MAP kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0042169 // SH2 domain binding // not recorded 1389927_at BI303536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303536 /DB_XREF=gi:14979816 /DB_XREF=UI-R-DQ0-cja-f-05-0-UI.s1 /CLONE=UI-R-DQ0-cja-f-05-0-UI /FEA=EST /CNT=10 /TID=Rn.21228.1 /TIER=Stack /STK=9 /UG=Rn.21228 /UG_TITLE=ESTs BI303536 zinc finger, MIZ-type containing 1 Zmiz1 361103 NM_001108393 0001570 // vasculogenesis // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0007296 // vitellogenesis // not recorded /// 0007569 // cell aging // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0048589 // developmental growth // not recorded /// 0048844 // artery morphogenesis // not recorded 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1389928_at BI296691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296691 /DB_XREF=gi:14961371 /DB_XREF=UI-R-CV2-cgv-b-12-0-UI.s1 /CLONE=UI-R-CV2-cgv-b-12-0-UI /FEA=EST /CNT=9 /TID=Rn.63271.1 /TIER=Stack /STK=9 /UG=Rn.63271 /UG_TITLE=ESTs BI296691 1389929_at BE110547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110547 /DB_XREF=gi:8502652 /DB_XREF=UI-R-BJ1-avt-c-08-0-UI.s1 /CLONE=UI-R-BJ1-avt-c-08-0-UI /FEA=EST /CNT=9 /TID=Rn.40276.1 /TIER=Stack /STK=9 /UG=Rn.40276 /UG_TITLE=ESTs, Weakly similar to PSF_HUMAN PTB-ASSOCIATED SPLICING FACTOR (H.sapiens) BE110547 Similar to novel protein RGD1563533 313713 XM_002726658 /// XM_002729564 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1389930_at AI598451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598451 /DB_XREF=gi:4607499 /DB_XREF=EST250154 /CLONE=REMDP51 /FEA=EST /CNT=9 /TID=Rn.7535.1 /TIER=Stack /STK=9 /UG=Rn.7535 /UG_TITLE=ESTs, Highly similar to I56581 dnaK-type molecular chaperone grp75 precursor - rat (R.norvegicus) AI598451 Heat shock protein 9 Hspa9 291671 NM_001100658 0006457 // protein folding // inferred from electronic annotation /// 0006611 // protein export from nucleus // inferred from electronic annotation /// 0006611 // protein export from nucleus // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0051082 // unfolded protein binding // inferred from electronic annotation 1389931_at BF415984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415984 /DB_XREF=gi:11403973 /DB_XREF=UI-R-CA0-bkp-f-07-0-UI.s1 /CLONE=UI-R-CA0-bkp-f-07-0-UI /FEA=EST /CNT=9 /TID=Rn.53450.1 /TIER=Stack /STK=9 /UG=Rn.53450 /UG_TITLE=ESTs BF415984 1389932_at BF409436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409436 /DB_XREF=gi:11397375 /DB_XREF=UI-R-CA1-blf-f-02-0-UI.s1 /CLONE=UI-R-CA1-blf-f-02-0-UI /FEA=EST /CNT=9 /TID=Rn.26585.1 /TIER=Stack /STK=9 /UG=Rn.26585 /UG_TITLE=ESTs BF409436 1389933_at AI176476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176476 /DB_XREF=gi:3727114 /DB_XREF=EST220061 /CLONE=ROVBS30 /FEA=EST /CNT=9 /TID=Rn.22873.1 /TIER=Stack /STK=9 /UG=Rn.22873 /UG_TITLE=ESTs, Weakly similar to T31878 hypothetical protein F41E6.3 - Caenorhabditis elegans (C.elegans) AI176476 SMEK homolog 1, suppressor of mek1 (Dictyostelium) Smek1 314388 NM_001108050 0005515 // protein binding // not recorded 1389934_at AW253757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253757 /DB_XREF=gi:6597348 /DB_XREF=UI-R-BJ0-acz-a-06-0-UI.s1 /CLONE=UI-R-BJ0-acz-a-06-0-UI /FEA=EST /CNT=9 /TID=Rn.22511.1 /TIER=Stack /STK=9 /UG=Rn.22511 /UG_TITLE=ESTs, Weakly similar to MIPP MOUSE MIPP PROTEIN (M.musculus) AW253757 Kelch-like 31 (Drosophila) Klhl31 315833 NM_001108170 0005515 // protein binding // inferred from electronic annotation 1389935_at BI300457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300457 /DB_XREF=gi:14976737 /DB_XREF=UI-R-CV2-cif-b-12-0-UI.s1 /CLONE=UI-R-CV2-cif-b-12-0-UI /FEA=EST /CNT=9 /TID=Rn.66951.1 /TIER=Stack /STK=9 /UG=Rn.66951 /UG_TITLE=ESTs, Highly similar to Y195_HUMAN HYPOTHETICAL PROTEIN KIAA0195 (H.sapiens) BI300457 similar to mKIAA0195 protein RGD1309310 303677 XR_009492 /// XR_085974 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation 1389936_at BI291361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291361 /DB_XREF=gi:14950830 /DB_XREF=UI-R-CV2-cgp-b-10-0-UI.s1 /CLONE=UI-R-CV2-cgp-b-10-0-UI /FEA=EST /CNT=9 /TID=Rn.73060.1 /TIER=Stack /STK=9 /UG=Rn.73060 /UG_TITLE=ESTs, Weakly similar to S40959 transcription factor Brn-3A - rat (R.norvegicus) BI291361 similar to Tripartite motif protein 56 LOC687035 687035 XM_001076813 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1389937_at BF404834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404834 /DB_XREF=gi:11392809 /DB_XREF=UI-R-CA1-bic-c-05-0-UI.s1 /CLONE=UI-R-CA1-bic-c-05-0-UI /FEA=EST /CNT=9 /TID=Rn.63166.1 /TIER=Stack /STK=9 /UG=Rn.63166 /UG_TITLE=ESTs BF404834 1389938_at AW253265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253265 /DB_XREF=gi:6596856 /DB_XREF=UI-R-BJ0-aek-f-05-0-UI.s1 /CLONE=UI-R-BJ0-aek-f-05-0-UI /FEA=EST /CNT=9 /TID=Rn.37630.1 /TIER=Stack /STK=9 /UG=Rn.37630 /UG_TITLE=ESTs, Weakly similar to ETS1 RAT C-ETS-1 PROTEIN (R.norvegicus) AW253265 1389939_at BI300781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300781 /DB_XREF=gi:14977061 /DB_XREF=UI-R-CV2-cij-e-08-0-UI.s1 /CLONE=UI-R-CV2-cij-e-08-0-UI /FEA=EST /CNT=9 /TID=Rn.79898.1 /TIER=Stack /STK=9 /UG=Rn.79898 /UG_TITLE=ESTs BI300781 1389940_at AI178934 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178934 /DB_XREF=gi:3729572 /DB_XREF=EST222616 /CLONE=RSPBT43 /FEA=EST /CNT=41 /TID=Rn.1022.1 /TIER=Stack /STK=8 /UG=Rn.1022 /UG_TITLE=ESTs, Weakly similar to T42737 gp330 protein precursor - rat (R.norvegicus) AI178934 transmembrane emp24 domain trafficking protein 2 Tmed2 65165 NM_031722 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // non-traceable author statement /// 0006903 // vesicle targeting // non-traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030663 // COPI coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042589 // zymogen granule membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005515 // protein binding // not recorded 1389941_at BE109130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109130 /DB_XREF=gi:8501235 /DB_XREF=UI-R-BS1-azb-c-09-0-UI.s1 /CLONE=UI-R-BS1-azb-c-09-0-UI /FEA=EST /CNT=36 /TID=Rn.985.1 /TIER=Stack /STK=8 /UG=Rn.985 /UG_TITLE=ESTs BE109130 ADP-ribosylation factor-like 2 binding protein Arl2bp 498910 NM_001024906 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 1389942_at BF408366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408366 /DB_XREF=gi:11396341 /DB_XREF=UI-R-BJ2-brc-a-01-0-UI.s1 /CLONE=UI-R-BJ2-brc-a-01-0-UI /FEA=EST /CNT=9 /TID=Rn.24620.1 /TIER=Stack /STK=8 /UG=Rn.24620 /UG_TITLE=ESTs, Weakly similar to T12543 hypothetical protein DKFZp434M154.1 (H.sapiens) BF408366 Polyglutamine-containing protein Pqcp 314329 NM_001012470 0005634 // nucleus // inferred from electronic annotation 1389943_at BG372724 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372724 /DB_XREF=gi:13269261 /DB_XREF=UI-R-CV1-brz-g-06-0-UI.s1 /CLONE=UI-R-CV1-brz-g-06-0-UI /FEA=EST /CNT=9 /TID=Rn.41475.1 /TIER=Stack /STK=8 /UG=Rn.41475 /UG_TITLE=ESTs BG372724 1389944_at AI014155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI014155 /DB_XREF=gi:3227091 /DB_XREF=EST207710 /CLONE=RSPBF72 /FEA=EST /CNT=9 /TID=Rn.22375.1 /TIER=Stack /STK=8 /UG=Rn.22375 /UG_TITLE=ESTs, Weakly similar to coated vesicle membrane protein (Rattus norvegicus) (R.norvegicus) AI014155 Transmembrane emp24 protein transport domain containing 7 Tmed7 252889 NM_001105758 0006810 // transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1389945_at AI236919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236919 /DB_XREF=gi:3830425 /DB_XREF=EST233481 /CLONE=ROVDM32 /FEA=EST /CNT=9 /TID=Rn.54283.1 /TIER=Stack /STK=8 /UG=Rn.54283 /UG_TITLE=ESTs, Weakly similar to T43442 hypothetical protein DKFZp434P1514.1 (H.sapiens) AI236919 1389946_at BF289341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289341 /DB_XREF=gi:11220411 /DB_XREF=EST453932 /CLONE=RGIHD65 /FEA=EST /CNT=9 /TID=Rn.53847.1 /TIER=Stack /STK=8 /UG=Rn.53847 /UG_TITLE=ESTs, Moderately similar to T13614 N-acetyltransferase homolog EG:8D8.6 - fruit fly (D.melanogaster) BF289341 Similar to chromosome 14 open reading frame 35 RGD1559923 498489 NM_001109099 0008152 // metabolic process // inferred from electronic annotation 0008080 // N-acetyltransferase activity // inferred from electronic annotation 1389947_at AI028927 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI028927 /DB_XREF=gi:4295027 /DB_XREF=UI-R-C0-il-h-03-0-UI.s1 /CLONE=UI-R-C0-il-h-03-0-UI /FEA=EST /CNT=9 /TID=Rn.23475.1 /TIER=Stack /STK=8 /UG=Rn.23475 /UG_TITLE=ESTs AI028927 Similar to Hypothetical protein 5031404N19 RGD1305628 288204 XM_001057435 /// XM_213639 1389948_at BI296686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296686 /DB_XREF=gi:14961361 /DB_XREF=UI-R-CV2-cgv-b-07-0-UI.s1 /CLONE=UI-R-CV2-cgv-b-07-0-UI /FEA=EST /CNT=8 /TID=Rn.66316.1 /TIER=Stack /STK=8 /UG=Rn.66316 /UG_TITLE=ESTs BI296686 1389949_at BI298868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298868 /DB_XREF=gi:14975148 /DB_XREF=UI-R-CV2-chv-e-09-0-UI.s1 /CLONE=UI-R-CV2-chv-e-09-0-UI /FEA=EST /CNT=8 /TID=Rn.66601.1 /TIER=Stack /STK=8 /UG=Rn.66601 /UG_TITLE=ESTs BI298868 1389950_at AI009171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009171 /DB_XREF=gi:3223003 /DB_XREF=EST203622 /CLONE=REMBJ89 /FEA=EST /CNT=8 /TID=Rn.22150.1 /TIER=Stack /STK=8 /UG=Rn.22150 /UG_TITLE=ESTs AI009171 F-box protein 10 Fbxo10 362511 XM_001071167 /// XM_342829 1389951_at BF399415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399415 /DB_XREF=gi:11384419 /DB_XREF=UI-R-CA1-bjb-d-23-0-UI.s1 /CLONE=UI-R-CA1-bjb-d-23-0-UI /FEA=EST /CNT=8 /TID=Rn.53381.1 /TIER=Stack /STK=8 /UG=Rn.53381 /UG_TITLE=ESTs BF399415 1389952_at BG374668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374668 /DB_XREF=gi:13299140 /DB_XREF=UI-R-CV1-bsq-a-07-0-UI.s1 /CLONE=UI-R-CV1-bsq-a-07-0-UI /FEA=EST /CNT=8 /TID=Rn.73049.1 /TIER=Stack /STK=8 /UG=Rn.73049 /UG_TITLE=ESTs BG374668 1389953_at BG374592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374592 /DB_XREF=gi:13299029 /DB_XREF=UI-R-CV1-bsr-g-06-0-UI.s1 /CLONE=UI-R-CV1-bsr-g-06-0-UI /FEA=EST /CNT=8 /TID=Rn.23618.1 /TIER=Stack /STK=8 /UG=Rn.23618 /UG_TITLE=ESTs BG374592 1389954_at BI300513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300513 /DB_XREF=gi:14976793 /DB_XREF=UI-R-CV2-cif-g-12-0-UI.s1 /CLONE=UI-R-CV2-cif-g-12-0-UI /FEA=EST /CNT=8 /TID=Rn.73074.1 /TIER=Stack /STK=8 /UG=Rn.73074 /UG_TITLE=ESTs BI300513 1389955_at BE104483 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104483 /DB_XREF=gi:8496548 /DB_XREF=UI-R-BX0-asa-a-08-0-UI.s1 /CLONE=UI-R-BX0-asa-a-08-0-UI /FEA=EST /CNT=8 /TID=Rn.46179.1 /TIER=Stack /STK=8 /UG=Rn.46179 /UG_TITLE=ESTs BE104483 1389956_a_at AI180257 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180257 /DB_XREF=gi:3730895 /DB_XREF=EST224000 /CLONE=RSPCS52 /FEA=EST /CNT=8 /TID=Rn.65864.5 /TIER=Stack /STK=8 /UG=Rn.65864 /LL=85383 /UG_GENE=LOC85383 /UG_TITLE=unknown Glu-Pro dipeptide repeat protein AI180257 cytochrome c oxidase subunit 1 COX1 26195 0001666 // response to hypoxia // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from direct assay /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0009060 // aerobic respiration // inferred from electronic annotation /// 0015992 // proton transport // not recorded /// 0021549 // cerebellum development // inferred from expression pattern /// 0022900 // electron transport chain // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0042981 // regulation of apoptosis // traceable author statement /// 0046688 // response to copper ion // inferred from expression pattern /// 0051602 // response to electrical stimulus // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0004129 // cytochrome-c oxidase activity // not recorded /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389957_at BG378149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378149 /DB_XREF=gi:13302621 /DB_XREF=UI-R-CV1-bvo-e-10-0-UI.s1 /CLONE=UI-R-CV1-bvo-e-10-0-UI /FEA=EST /CNT=8 /TID=Rn.22218.1 /TIER=Stack /STK=8 /UG=Rn.22218 /UG_TITLE=ESTs, Highly similar to JW0059 mtprd protein - mouse (M.musculus) BG378149 tetratricopeptide repeat domain 3 Ttc3 360702 NM_001108315 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0010771 // negative regulation of cell morphogenesis involved in differentiation // not recorded /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0051789 // response to protein stimulus // not recorded /// 0070936 // protein K48-linked ubiquitination // not recorded 0005634 // nucleus // not recorded /// 0005773 // vacuole // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389958_at BI296606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296606 /DB_XREF=gi:14961198 /DB_XREF=UI-R-CV2-cgt-b-11-0-UI.s1 /CLONE=UI-R-CV2-cgt-b-11-0-UI /FEA=EST /CNT=8 /TID=Rn.66256.1 /TIER=Stack /STK=8 /UG=Rn.66256 /UG_TITLE=ESTs BI296606 1389959_at BF413628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413628 /DB_XREF=gi:11401617 /DB_XREF=UI-R-CA0-bog-f-04-0-UI.s1 /CLONE=UI-R-CA0-bog-f-04-0-UI /FEA=EST /CNT=8 /TID=Rn.63084.1 /TIER=Stack /STK=8 /UG=Rn.63084 /UG_TITLE=ESTs BF413628 1389960_at BF390877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390877 /DB_XREF=gi:11375724 /DB_XREF=UI-R-CA1-bci-e-06-0-UI.s1 /CLONE=UI-R-CA1-bci-e-06-0-UI /FEA=EST /CNT=8 /TID=Rn.57310.1 /TIER=Stack /STK=8 /UG=Rn.57310 /UG_TITLE=ESTs BF390877 1389961_at AA900261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900261 /DB_XREF=gi:4232752 /DB_XREF=UI-R-E0-de-g-04-0-UI.s2 /CLONE=UI-R-E0-de-g-04-0-UI /FEA=EST /CNT=8 /TID=Rn.22165.1 /TIER=Stack /STK=8 /UG=Rn.22165 /UG_TITLE=ESTs AA900261 serologically defined colon cancer antigen 3 Sdccag3 306322 NM_001013135 1389962_at BF386299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386299 /DB_XREF=gi:11371123 /DB_XREF=UI-R-CA1-bbc-h-07-0-UI.s1 /CLONE=UI-R-CA1-bbc-h-07-0-UI /FEA=EST /CNT=8 /TID=Rn.60243.1 /TIER=Stack /STK=8 /UG=Rn.60243 /UG_TITLE=ESTs BF386299 1389963_at BI283388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283388 /DB_XREF=gi:14935082 /DB_XREF=UI-R-DD0-bzz-f-01-0-UI.s1 /CLONE=UI-R-DD0-bzz-f-01-0-UI /FEA=EST /CNT=45 /TID=Rn.3579.1 /TIER=Stack /STK=7 /UG=Rn.3579 /UG_TITLE=ESTs, Moderately similar to CSKP RAT PERIPHERAL PLASMA MEMBRANE PROTEIN CASK (R.norvegicus) BI283388 p55 protein LOC652956 652956 NM_001037659 0005515 // protein binding // inferred from electronic annotation 1389964_at AA944343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944343 /DB_XREF=gi:3104259 /DB_XREF=EST199842 /CLONE=REMAF65 /FEA=EST /CNT=45 /TID=Rn.1318.1 /TIER=Stack /STK=7 /UG=Rn.1318 /UG_TITLE=ESTs, Moderately similar to T00741 NADH dehydrogenase (H.sapiens) AA944343 similar to Acyl carrier protein, mitochondrial precursor (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) (CI-SDAP) /// NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 LOC683884 /// Ndufab1 293453 /// 683884 NM_001106294 /// XM_001067919 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005747 // mitochondrial respiratory chain complex I // not recorded 0000036 // acyl carrier activity // inferred from electronic annotation /// 0031177 // phosphopantetheine binding // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation 1389965_at AA799818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799818 /DB_XREF=gi:2862773 /DB_XREF=EST189315 /CLONE=RHEAF73 /FEA=EST /CNT=35 /TID=Rn.2188.1 /TIER=Stack /STK=7 /UG=Rn.2188 /UG_TITLE=ESTs AA799818 trans-golgi network protein Tgoln1 192152 NM_138840 0006895 // Golgi to endosome transport // traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // traceable author statement /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1389966_at AI176126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176126 /DB_XREF=gi:3726764 /DB_XREF=EST219706 /CLONE=ROVBL04 /FEA=EST /CNT=29 /TID=Rn.2157.1 /TIER=Stack /STK=7 /UG=Rn.2157 /UG_TITLE=ESTs, Weakly similar to ALZHEIMERS DISEASE AMYLOID A4 PROTEIN HOMOLOG PRECURSOR (R.norvegicus) AI176126 1389967_at AA892386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892386 /DB_XREF=gi:3019265 /DB_XREF=EST196189 /CLONE=RKIAP78 /FEA=EST /CNT=49 /TID=Rn.3366.1 /TIER=Stack /STK=7 /UG=Rn.3366 /UG_TITLE=ESTs, Highly similar to AR61_MOUSE ARL-6 INTERACTING PROTEIN-1 (AIP-1) (TBX2 PROTEIN) (M.musculus) AA892386 ADP-ribosylation factor-like 6 interacting protein 1 Arl6ip1 293551 NM_198737 0006613 // cotranslational protein targeting to membrane // inferred from electronic annotation /// 0006613 // cotranslational protein targeting to membrane // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005784 // Sec61 translocon complex // inferred from electronic annotation /// 0005784 // Sec61 translocon complex // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389968_at BG376953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376953 /DB_XREF=gi:13301425 /DB_XREF=UI-R-CU0-bvl-d-11-0-UI.s1 /CLONE=UI-R-CU0-bvl-d-11-0-UI /FEA=EST /CNT=31 /TID=Rn.1644.1 /TIER=Stack /STK=7 /UG=Rn.1644 /UG_TITLE=ESTs, Highly similar to IF3A MOUSE EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 10 (M.musculus) BG376953 eukaryotic translation initiation factor 3, subunit A Eif3a 292148 NM_001047087 0001732 // formation of translation initiation complex // inferred from electronic annotation /// 0001732 // formation of translation initiation complex // not recorded /// 0001732 // formation of translation initiation complex // inferred from sequence or structural similarity /// 0006412 // translation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from electronic annotation /// 0005852 // eukaryotic translation initiation factor 3 complex // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from sequence or structural similarity 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003743 // translation initiation factor activity // not recorded /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389969_at AA944181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944181 /DB_XREF=gi:3104097 /DB_XREF=EST199680 /CLONE=REMAD36 /FEA=EST /CNT=19 /TID=Rn.17999.1 /TIER=Stack /STK=7 /UG=Rn.17999 /UG_TITLE=ESTs, Highly similar to OM40_MOUSE PROBABLE MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM40 HOMOLOG (TRANSLOCASE OF OUTER MEMBRANE 40 KDA SUBUNIT HOMOLOG) (M.musculus) AA944181 1389970_at BG378319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378319 /DB_XREF=gi:13302791 /DB_XREF=UI-R-CV1-bvq-f-11-0-UI.s1 /CLONE=UI-R-CV1-bvq-f-11-0-UI /FEA=EST /CNT=17 /TID=Rn.11521.1 /TIER=Stack /STK=7 /UG=Rn.11521 /UG_TITLE=ESTs, Weakly similar to Yeast YAE2 hypothetical protein (Caenorhabditis elegans) (C.elegans) BG378319 ERGIC and golgi 2 Ergic2 297728 NM_001024984 1389971_at AI179438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179438 /DB_XREF=gi:3730076 /DB_XREF=EST223147 /CLONE=RSPCH35 /FEA=EST /CNT=15 /TID=Rn.3825.1 /TIER=Stack /STK=7 /UG=Rn.3825 /UG_TITLE=ESTs, Highly similar to SGCE_MOUSE Epsilon-sarcoglycan precursor (Epsilon-SG) (M.musculus) AI179438 sarcoglycan, epsilon Sgce 432360 NM_001002023 0007417 // central nervous system development // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016010 // dystrophin-associated glycoprotein complex // not recorded /// 0016012 // sarcoglycan complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1389972_at AA943681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943681 /DB_XREF=gi:3103597 /DB_XREF=EST199180 /CLONE=RBRAN55 /FEA=EST /CNT=13 /TID=Rn.3504.2 /TIER=Stack /STK=7 /UG=Rn.3504 /LL=117183 /UG_GENE=Rgc32 /UG_TITLE=Rgc32 protein AA943681 1389973_a_at BE112262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112262 /DB_XREF=gi:8504367 /DB_XREF=UI-R-BJ1-avl-f-02-0-UI.s1 /CLONE=UI-R-BJ1-avl-f-02-0-UI /FEA=EST /CNT=13 /TID=Rn.33769.3 /TIER=Stack /STK=7 /UG=Rn.33769 /UG_TITLE=ESTs, Moderately similar to SUR2 MOUSE SURFEIT LOCUS PROTEIN 2 (M.musculus) BE112262 surfeit 4 Surf4 619346 NM_001033868 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389974_at BF555171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555171 /DB_XREF=gi:11664901 /DB_XREF=UI-R-E0-ct-a-05-0-UI.r1 /CLONE=UI-R-E0-ct-a-05-0-UI /FEA=EST /CNT=12 /TID=Rn.4231.1 /TIER=Stack /STK=7 /UG=Rn.4231 /UG_TITLE=ESTs, Weakly similar to 0806162N protein URFA6L (M.musculus) BF555171 1389975_at BE116949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116949 /DB_XREF=gi:8509019 /DB_XREF=UI-R-BS1-azg-f-12-0-UI.s1 /CLONE=UI-R-BS1-azg-f-12-0-UI /FEA=EST /CNT=16 /TID=Rn.23876.1 /TIER=Stack /STK=7 /UG=Rn.23876 /UG_TITLE=ESTs, Highly similar to HUD RAT PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD HOMOLOG (R.norvegicus) BE116949 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) Elavl4 432358 NM_001077651 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0017091 // AU-rich element binding // not recorded /// 0017091 // AU-rich element binding // inferred from sequence or structural similarity 1389976_at BE109682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109682 /DB_XREF=gi:8501787 /DB_XREF=UI-R-BJ1-avq-h-10-0-UI.s1 /CLONE=UI-R-BJ1-avq-h-10-0-UI /FEA=EST /CNT=13 /TID=Rn.7621.2 /TIER=Stack /STK=7 /UG=Rn.7621 /UG_TITLE=ESTs BE109682 1389977_at AI599739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599739 /DB_XREF=gi:4608787 /DB_XREF=EST251442 /CLONE=REMEG49 /FEA=EST /CNT=11 /TID=Rn.13390.1 /TIER=Stack /STK=7 /UG=Rn.13390 /UG_TITLE=ESTs, Weakly similar to 2204390A synaptojanin (R.norvegicus) AI599739 1389978_at BF396079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396079 /DB_XREF=gi:11381051 /DB_XREF=UI-R-CA1-bcb-b-01-0-UI.s1 /CLONE=UI-R-CA1-bcb-b-01-0-UI /FEA=EST /CNT=10 /TID=Rn.64312.1 /TIER=Stack /STK=7 /UG=Rn.64312 /UG_TITLE=ESTs, Weakly similar to SWISNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 (Mus musculus) (M.musculus) BF396079 similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin c2 LOC685179 685179 XM_001055673 /// XM_001055738 /// XM_001055795 /// XM_002726856 /// XM_002729767 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006338 // chromatin remodeling // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0000785 // chromatin // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0016514 // SWI/SNF complex // not recorded /// 0017053 // transcriptional repressor complex // not recorded /// 0071564 // npBAF complex // not recorded /// 0071565 // nBAF complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389979_at BI274235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274235 /DB_XREF=gi:14884968 /DB_XREF=UI-R-CW0-bwg-e-12-0-UI.s1 /CLONE=UI-R-CW0-bwg-e-12-0-UI /FEA=EST /CNT=10 /TID=Rn.14204.1 /TIER=Stack /STK=7 /UG=Rn.14204 /UG_TITLE=ESTs, Weakly similar to T32381 hypothetical protein F53G2.6 - Caenorhabditis elegans (C.elegans) BI274235 transportin 3 Tnpo3 296954 NM_001106587 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1389980_at AI412591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412591 /DB_XREF=gi:4256095 /DB_XREF=EST240890 /CLONE=RBRDJ73 /FEA=EST /CNT=10 /TID=Rn.24859.1 /TIER=Stack /STK=7 /UG=Rn.24859 /UG_TITLE=ESTs, Weakly similar to CNIH MOUSE CORNICHON HOMOLOG (M.musculus) AI412591 cornichon homolog 4 (Drosophila) Cnih4 289324 NM_001105981 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005783 // endoplasmic reticulum // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1389981_at BE116889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116889 /DB_XREF=gi:8509034 /DB_XREF=UI-R-BS1-azg-h-03-0-UI.s1 /CLONE=UI-R-BS1-azg-h-03-0-UI /FEA=EST /CNT=10 /TID=Rn.32235.1 /TIER=Stack /STK=7 /UG=Rn.32235 /UG_TITLE=ESTs BE116889 1389982_at BF419586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419586 /DB_XREF=gi:11407575 /DB_XREF=UI-R-CA0-bpd-h-04-0-UI.s1 /CLONE=UI-R-CA0-bpd-h-04-0-UI /FEA=EST /CNT=9 /TID=Rn.48902.1 /TIER=Stack /STK=7 /UG=Rn.48902 /UG_TITLE=ESTs BF419586 LIM homeobox 1 Lhx1 257634 NM_145880 0001655 // urogenital system development // inferred from electronic annotation /// 0001655 // urogenital system development // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // not recorded /// 0001705 // ectoderm formation // inferred from electronic annotation /// 0001705 // ectoderm formation // not recorded /// 0001706 // endoderm formation // inferred from electronic annotation /// 0001706 // endoderm formation // not recorded /// 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0009653 // anatomical structure morphogenesis // not recorded /// 0009653 // anatomical structure morphogenesis // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0009880 // embryonic pattern specification // inferred from electronic annotation /// 0009880 // embryonic pattern specification // not recorded /// 0009948 // anterior/posterior axis specification // inferred from electronic annotation /// 0009948 // anterior/posterior axis specification // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0021549 // cerebellum development // inferred from electronic annotation /// 0021549 // cerebellum development // not recorded /// 0021702 // cerebellar Purkinje cell differentiation // inferred from electronic annotation /// 0021702 // cerebellar Purkinje cell differentiation // not recorded /// 0021871 // forebrain regionalization // inferred from electronic annotation /// 0021871 // forebrain regionalization // not recorded /// 0021937 // cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation // inferred from electronic annotation /// 0021937 // cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048646 // anatomical structure formation involved in morphogenesis // inferred from electronic annotation /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded /// 0060322 // head development // inferred from electronic annotation /// 0060322 // head development // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389983_at AA848782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848782 /DB_XREF=gi:2936322 /DB_XREF=EST191543 /CLONE=RLUAF96 /FEA=EST /CNT=9 /TID=Rn.3274.2 /TIER=Stack /STK=7 /UG=Rn.3274 /UG_TITLE=ESTs, Moderately similar to YU20 MOUSE HYPOTHETICAL PROTEIN (M.musculus) AA848782 nucleolar complex associated 2 homolog (S. cerevisiae) Noc2l 313777 NM_001033897 0005488 // binding // inferred from electronic annotation 1389984_at AI072294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072294 /DB_XREF=gi:3398488 /DB_XREF=UI-R-C2-ne-h-06-0-UI.s1 /CLONE=UI-R-C2-ne-h-06-0-UI /FEA=EST /CNT=9 /TID=Rn.18917.1 /TIER=Stack /STK=7 /UG=Rn.18917 /UG_TITLE=ESTs AI072294 similar to jumonji protein LOC681740 681740 XM_001056897 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1389985_at BF415238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415238 /DB_XREF=gi:11403227 /DB_XREF=UI-R-BJ2-boz-e-09-0-UI.s1 /CLONE=UI-R-BJ2-boz-e-09-0-UI /FEA=EST /CNT=9 /TID=Rn.37778.1 /TIER=Stack /STK=7 /UG=Rn.37778 /UG_TITLE=ESTs, Highly similar to TFE3_HUMAN TRANSCRIPTION FACTOR E3 (H.sapiens) BF415238 transcription factor E3 Tcfe3 317376 XM_002727531 /// XM_002730205 /// XM_228760 0006959 // humoral immune response // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045670 // regulation of osteoclast differentiation // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1389986_at AI008409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008409 /DB_XREF=gi:3222241 /DB_XREF=EST202860 /CLONE=REMAW93 /FEA=EST /CNT=9 /TID=Rn.65864.6 /TIER=Stack /STK=7 /UG=Rn.65864 /LL=85383 /UG_GENE=LOC85383 /UG_TITLE=unknown Glu-Pro dipeptide repeat protein AI008409 1389987_at AI511059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511059 /DB_XREF=gi:4416758 /DB_XREF=UI-R-C2p-od-h-05-0-UI.s1 /CLONE=UI-R-C2p-od-h-05-0-UI /FEA=EST /CNT=9 /TID=Rn.34615.1 /TIER=Stack /STK=7 /UG=Rn.34615 /UG_TITLE=ESTs AI511059 tribbles homolog 1 (Drosophila) Trib1 78969 NM_023985 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0007254 // JNK cascade // inferred from electronic annotation /// 0007254 // JNK cascade // not recorded /// 0014912 // negative regulation of smooth muscle cell migration // inferred from electronic annotation /// 0014912 // negative regulation of smooth muscle cell migration // not recorded /// 0031665 // negative regulation of lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0031665 // negative regulation of lipopolysaccharide-mediated signaling pathway // not recorded /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0043405 // regulation of MAP kinase activity // inferred from electronic annotation /// 0043405 // regulation of MAP kinase activity // not recorded /// 0043433 // negative regulation of transcription factor activity // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048662 // negative regulation of smooth muscle cell proliferation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004672 // protein kinase activity // inferred from electronic annotation /// 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0004860 // protein kinase inhibitor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0031434 // mitogen-activated protein kinase kinase binding // inferred from electronic annotation /// 0031434 // mitogen-activated protein kinase kinase binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0055106 // ubiquitin-protein ligase regulator activity // inferred from electronic annotation /// 0055106 // ubiquitin-protein ligase regulator activity // not recorded 1389988_at BI301226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301226 /DB_XREF=gi:14977506 /DB_XREF=UI-R-DK0-cek-b-06-0-UI.s2 /CLONE=UI-R-DK0-cek-b-06-0-UI /FEA=EST /CNT=9 /TID=Rn.21595.1 /TIER=Stack /STK=7 /UG=Rn.21595 /UG_TITLE=ESTs BI301226 potassium channel tetramerisation domain containing 2 Kctd2 498024 XM_001081684 /// XM_573223 0006813 // potassium ion transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1389989_at BF397805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397805 /DB_XREF=gi:11382789 /DB_XREF=UI-R-BS2-bee-h-01-0-UI.s1 /CLONE=UI-R-BS2-bee-h-01-0-UI /FEA=EST /CNT=9 /TID=Rn.59057.1 /TIER=Stack /STK=7 /UG=Rn.59057 /UG_TITLE=ESTs, Highly similar to ATRX MOUSE TRANSCRIPTIONAL REGULATOR ATRX (M.musculus) BF397805 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation 0000228 // nuclear chromosome // inferred from electronic annotation /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0070087 // chromo shadow domain binding // inferred from electronic annotation 1389990_at BE329244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329244 /DB_XREF=gi:9203020 /DB_XREF=hq38g11.x1 /CLONE=IMAGE:3121700 /FEA=EST /CNT=8 /TID=Rn.54045.1 /TIER=Stack /STK=7 /UG=Rn.54045 /UG_TITLE=ESTs BE329244 1389991_at BI278555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278555 /DB_XREF=gi:14925516 /DB_XREF=UI-R-CW0-bxn-b-06-0-UI.s1 /CLONE=UI-R-CW0-bxn-b-06-0-UI /FEA=EST /CNT=8 /TID=Rn.50386.1 /TIER=Stack /STK=7 /UG=Rn.50386 /UG_TITLE=ESTs, Weakly similar to T2D3_HUMAN TRANSCRIPTION INITIATION FACTOR TFIID 135 KDA SUBUNIT (H.sapiens) BI278555 0005515 // protein binding // inferred from electronic annotation 1389992_at BF392822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392822 /DB_XREF=gi:11377681 /DB_XREF=UI-R-CA0-bfo-f-09-0-UI.s1 /CLONE=UI-R-CA0-bfo-f-09-0-UI /FEA=EST /CNT=8 /TID=Rn.64137.1 /TIER=Stack /STK=7 /UG=Rn.64137 /UG_TITLE=ESTs BF392822 similar to membrane protein expressed in epithelial-like lung adenocarcinoma RGD1307493 303317 XM_001080742 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1389993_at BI299095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299095 /DB_XREF=gi:14975375 /DB_XREF=UI-R-CV2-chr-b-06-0-UI.s1 /CLONE=UI-R-CV2-chr-b-06-0-UI /FEA=EST /CNT=8 /TID=Rn.19699.1 /TIER=Stack /STK=7 /UG=Rn.19699 /UG_TITLE=ESTs BI299095 WD repeat domain 33 Wdr33 307524 NM_001107398 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1389994_at BE104268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104268 /DB_XREF=gi:8496368 /DB_XREF=UI-R-BX0-arm-g-09-0-UI.s1 /CLONE=UI-R-BX0-arm-g-09-0-UI /FEA=EST /CNT=8 /TID=Rn.12111.1 /TIER=Stack /STK=7 /UG=Rn.12111 /UG_TITLE=ESTs BE104268 1389995_at BF546042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546042 /DB_XREF=gi:11637107 /DB_XREF=UI-R-C2p-re-b-11-0-UI.r1 /CLONE=UI-R-C2p-re-b-11-0-UI /FEA=EST /CNT=8 /TID=Rn.39266.1 /TIER=Stack /STK=7 /UG=Rn.39266 /UG_TITLE=ESTs, Weakly similar to NFH RAT NEUROFILAMENT TRIPLET H PROTEIN (R.norvegicus) BF546042 serine/arginine repetitive matrix 1 Srrm1 313620 NM_001107986 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005681 // spliceosomal complex // not recorded 0005515 // protein binding // not recorded 1389996_at AI406369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406369 /DB_XREF=gi:4249873 /DB_XREF=EST234655 /CLONE=RBRDM94 /FEA=EST /CNT=8 /TID=Rn.7676.1 /TIER=Stack /STK=7 /UG=Rn.7676 /UG_TITLE=ESTs, Moderately similar to SERINETHREONINE-PROTEIN KINASE NEK1 (M.musculus) AI406369 NIMA (never in mitosis gene a)-related expressed kinase 1 Nek1 290705 NM_001106082 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0010212 // response to ionizing radiation // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1389997_at AA945909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945909 /DB_XREF=gi:4132637 /DB_XREF=EST201408 /CLONE=RLUAW81 /FEA=EST /CNT=8 /TID=Rn.23767.1 /TIER=Stack /STK=7 /UG=Rn.23767 /UG_TITLE=ESTs, Moderately similar to CD3E MOUSE T-CELL SURFACE GLYCOPROTEIN CD3 EPSILON CHAIN PRECURSOR (M.musculus) AA945909 CD3 molecule, epsilon polypeptide Cd3e 315609 NM_001108140 0002669 // positive regulation of T cell anergy // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007584 // response to nutrient // inferred from direct assay /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0032753 // positive regulation of interleukin-4 production // not recorded /// 0033077 // T cell differentiation in thymus // inferred from expression pattern /// 0042102 // positive regulation of T cell proliferation // inferred from direct assay /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0045060 // negative thymic T cell selection // not recorded /// 0045086 // positive regulation of interleukin-2 biosynthetic process // not recorded /// 0045879 // negative regulation of smoothened signaling pathway // not recorded /// 0046641 // positive regulation of alpha-beta T cell proliferation // not recorded /// 0046649 // lymphocyte activation // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050850 // positive regulation of calcium-mediated signaling // not recorded /// 0050852 // T cell receptor signaling pathway // not recorded /// 0050870 // positive regulation of T cell activation // not recorded 0001772 // immunological synapse // not recorded /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0042101 // T cell receptor complex // not recorded /// 0042105 // alpha-beta T cell receptor complex // not recorded 0004871 // signal transducer activity // not recorded /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017124 // SH3 domain binding // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1389998_at BE113958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113958 /DB_XREF=gi:8506063 /DB_XREF=UI-R-BJ1-awi-d-08-0-UI.s1 /CLONE=UI-R-BJ1-awi-d-08-0-UI /FEA=EST /CNT=8 /TID=Rn.48844.1 /TIER=Stack /STK=7 /UG=Rn.48844 /UG_TITLE=ESTs BE113958 Nuclear receptor subfamily 2, group F, member 2 Nr2f2 113984 NM_080778 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0001937 // negative regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0001945 // lymph vessel development // inferred from electronic annotation /// 0001945 // lymph vessel development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009956 // radial pattern formation // inferred from electronic annotation /// 0009956 // radial pattern formation // not recorded /// 0010596 // negative regulation of endothelial cell migration // inferred from electronic annotation /// 0010596 // negative regulation of endothelial cell migration // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032582 // negative regulation of gene-specific transcription // inferred from electronic annotation /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // not recorded /// 0060173 // limb development // inferred from electronic annotation /// 0060173 // limb development // not recorded /// 0060849 // regulation of transcription involved in lymphatic endothelial cell fate commitment // inferred from electronic annotation /// 0060849 // regulation of transcription involved in lymphatic endothelial cell fate commitment // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0001972 // retinoic acid binding // not recorded /// 0001972 // retinoic acid binding // inferred from sequence or structural similarity /// 0001972 // retinoic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003706 // ligand-regulated transcription factor activity // not recorded /// 0003706 // ligand-regulated transcription factor activity // inferred from sequence or structural similarity /// 0003706 // ligand-regulated transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1389999_at BI289392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289392 /DB_XREF=gi:14946913 /DB_XREF=UI-R-DK0-cfg-d-07-0-UI.s1 /CLONE=UI-R-DK0-cfg-d-07-0-UI /FEA=EST /CNT=8 /TID=Rn.39079.1 /TIER=Stack /STK=7 /UG=Rn.39079 /UG_TITLE=ESTs, Highly similar to EF2K RAT ELONGATION FACTOR 2 KINASE (R.norvegicus) BI289392 Eukaryotic elongation factor-2 kinase Eef2k 25435 NM_012947 0006468 // protein phosphorylation // inferred from electronic annotation 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004686 // elongation factor-2 kinase activity // inferred from mutant phenotype /// 0004686 // elongation factor-2 kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1390000_at BE118720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118720 /DB_XREF=gi:8510825 /DB_XREF=UI-R-BS1-azr-h-10-0-UI.s1 /CLONE=UI-R-BS1-azr-h-10-0-UI /FEA=EST /CNT=8 /TID=Rn.41074.1 /TIER=Stack /STK=7 /UG=Rn.41074 /UG_TITLE=ESTs, Weakly similar to T42387 histocompatibility antigen H-YDb, male-specific - mouse (M.musculus) BE118720 lysine (K)-specific demethylase 6B Kdm6b 363630 NM_001108829 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0016577 // histone demethylation // not recorded /// 0016577 // histone demethylation // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1390001_at BF402407 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402407 /DB_XREF=gi:11390382 /DB_XREF=UI-R-CA0-bhn-h-04-0-UI.s1 /CLONE=UI-R-CA0-bhn-h-04-0-UI /FEA=EST /CNT=7 /TID=Rn.60787.1 /TIER=Stack /STK=7 /UG=Rn.60787 /UG_TITLE=ESTs BF402407 Rho-related BTB domain containing 2 Rhobtb2 306004 NM_001013133 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1390002_at BI296438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296438 /DB_XREF=gi:14960862 /DB_XREF=UI-R-CV2-cgr-b-11-0-UI.s1 /CLONE=UI-R-CV2-cgr-b-11-0-UI /FEA=EST /CNT=7 /TID=Rn.66977.1 /TIER=Stack /STK=7 /UG=Rn.66977 /UG_TITLE=ESTs BI296438 1390003_at BE103960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103960 /DB_XREF=gi:8496060 /DB_XREF=UI-R-BX0-arj-h-11-0-UI.s1 /CLONE=UI-R-BX0-arj-h-11-0-UI /FEA=EST /CNT=7 /TID=Rn.9687.2 /TIER=Stack /STK=7 /UG=Rn.9687 /LL=24558 /UG_GENE=Mog /UG_TITLE=Myelin oligodendrocyte glycoprotein BE103960 zinc finger protein 57 Zfp57 361783 NM_213565 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006349 // regulation of gene expression by genetic imprinting // not recorded /// 0006349 // regulation of gene expression by genetic imprinting // inferred from sequence or structural similarity /// 0006349 // regulation of gene expression by genetic imprinting // inferred from electronic annotation /// 0006349 // regulation of gene expression by genetic imprinting // inferred from mutant phenotype /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007422 // peripheral nervous system development // inferred from expression pattern /// 0007422 // peripheral nervous system development // inferred from electronic annotation /// 0043045 // DNA methylation involved in embryo development // not recorded /// 0043045 // DNA methylation involved in embryo development // inferred from sequence or structural similarity /// 0043045 // DNA methylation involved in embryo development // inferred from electronic annotation /// 0043045 // DNA methylation involved in embryo development // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0071445 // cellular response to protein stimulus // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005720 // nuclear heterochromatin // inferred from electronic annotation /// 0005720 // nuclear heterochromatin // not recorded /// 0005720 // nuclear heterochromatin // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // inferred from mutant phenotype /// 0016566 // specific transcriptional repressor activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390004_at BI291316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291316 /DB_XREF=gi:14950740 /DB_XREF=UI-R-CV2-cgo-d-06-0-UI.s1 /CLONE=UI-R-CV2-cgo-d-06-0-UI /FEA=EST /CNT=7 /TID=Rn.76408.1 /TIER=Stack /STK=7 /UG=Rn.76408 /UG_TITLE=ESTs BI291316 1390005_at BF404290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404290 /DB_XREF=gi:11392265 /DB_XREF=UI-R-CA1-bjd-g-07-0-UI.s1 /CLONE=UI-R-CA1-bjd-g-07-0-UI /FEA=EST /CNT=7 /TID=Rn.61561.1 /TIER=Stack /STK=7 /UG=Rn.61561 /UG_TITLE=ESTs BF404290 1390006_at AA997041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997041 /DB_XREF=gi:4280804 /DB_XREF=UI-R-C0-hk-b-08-0-UI.s1 /CLONE=UI-R-C0-hk-b-08-0-UI /FEA=EST /CNT=7 /TID=Rn.49608.1 /TIER=Stack /STK=7 /UG=Rn.49608 /UG_TITLE=ESTs AA997041 RNA binding motif protein 15B Rbm15b 315988 XM_001074007 /// XM_236613 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1390007_at BE121293 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121293 /DB_XREF=gi:8513398 /DB_XREF=UI-R-CA0-baw-c-02-0-UI.s1 /CLONE=UI-R-CA0-baw-c-02-0-UI /FEA=EST /CNT=7 /TID=Rn.53291.1 /TIER=Stack /STK=7 /UG=Rn.53291 /UG_TITLE=ESTs BE121293 1390008_at BF420673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420673 /DB_XREF=gi:11408662 /DB_XREF=UI-R-BJ2-bpy-g-07-0-UI.s1 /CLONE=UI-R-BJ2-bpy-g-07-0-UI /FEA=EST /CNT=7 /TID=Rn.40380.2 /TIER=Stack /STK=7 /UG=Rn.40380 /LL=114491 /UG_GENE=Cited4 /UG_TITLE=Cbpp300-interacting transactivator, with GluAsp-rich carboxy-terminal domain, 4 BF420673 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4 Cited4 114491 NM_053699 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003713 // transcription coactivator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1390009_at AW523412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523412 /DB_XREF=gi:7165797 /DB_XREF=UI-R-BO0-aif-h-10-0-UI.s1 /CLONE=UI-R-BO0-aif-h-10-0-UI /FEA=EST /CNT=7 /TID=Rn.22553.1 /TIER=Stack /STK=7 /UG=Rn.22553 /UG_TITLE=ESTs, Weakly similar to F08B4.1.p (Caenorhabditis elegans) (C.elegans) AW523412 Integrator complex subunit 6 Ints6 361057 NM_001047904 0016180 // snRNA processing // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0015629 // actin cytoskeleton // not recorded /// 0032039 // integrator complex // not recorded 0005515 // protein binding // not recorded 1390010_at AI454081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454081 /DB_XREF=gi:4291230 /DB_XREF=UI-R-BT0-qa-h-12-0-UI.s1 /CLONE=UI-R-BT0-qa-h-12-0-UI /FEA=EST /CNT=7 /TID=Rn.40146.1 /TIER=Stack /STK=7 /UG=Rn.40146 /UG_TITLE=ESTs, Highly similar to 2124437A steroid receptor coactivator 1 (H.sapiens) AI454081 nuclear receptor coactivator 1 Ncoa1 313929 NM_001108012 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0021549 // cerebellum development // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from mutant phenotype /// 0032526 // response to retinoic acid // inferred from mutant phenotype /// 0032570 // response to progesterone stimulus // inferred from mutant phenotype /// 0032870 // cellular response to hormone stimulus // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060206 // estrous cycle phase // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0035257 // nuclear hormone receptor binding // inferred from electronic annotation 1390011_at BI296601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296601 /DB_XREF=gi:14961188 /DB_XREF=UI-R-CV2-cgt-b-06-0-UI.s1 /CLONE=UI-R-CV2-cgt-b-06-0-UI /FEA=EST /CNT=7 /TID=Rn.73234.1 /TIER=Stack /STK=7 /UG=Rn.73234 /UG_TITLE=ESTs BI296601 1390012_at BI298861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298861 /DB_XREF=gi:14975141 /DB_XREF=UI-R-CV2-chv-e-02-0-UI.s1 /CLONE=UI-R-CV2-chv-e-02-0-UI /FEA=EST /CNT=7 /TID=Rn.66173.1 /TIER=Stack /STK=7 /UG=Rn.66173 /UG_TITLE=ESTs BI298861 Mannosidase, alpha, class 2B, member 1 Man2b1 361378 NM_199404 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006013 // mannose metabolic process // inferred from electronic annotation /// 0006013 // mannose metabolic process // not recorded /// 0006464 // protein modification process // inferred from electronic annotation /// 0006464 // protein modification process // not recorded /// 0007611 // learning or memory // inferred from electronic annotation /// 0007611 // learning or memory // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004559 // alpha-mannosidase activity // inferred from direct assay /// 0004559 // alpha-mannosidase activity // inferred from mutant phenotype /// 0004559 // alpha-mannosidase activity // not recorded /// 0004559 // alpha-mannosidase activity // inferred from electronic annotation /// 0005537 // mannose binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0015923 // mannosidase activity // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation 1390013_at BF410427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410427 /DB_XREF=gi:11398402 /DB_XREF=UI-R-CA1-bjx-d-05-0-UI.s1 /CLONE=UI-R-CA1-bjx-d-05-0-UI /FEA=EST /CNT=7 /TID=Rn.61970.1 /TIER=Stack /STK=7 /UG=Rn.61970 /UG_TITLE=ESTs BF410427 1390014_at BF399576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399576 /DB_XREF=gi:11384584 /DB_XREF=UI-R-CA0-bht-d-05-0-UI.s2 /CLONE=UI-R-CA0-bht-d-05-0-UI /FEA=EST /CNT=7 /TID=Rn.61553.1 /TIER=Stack /STK=7 /UG=Rn.61553 /UG_TITLE=ESTs BF399576 1390015_at BF396127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396127 /DB_XREF=gi:11381099 /DB_XREF=UI-R-CA1-bcb-f-05-0-UI.s1 /CLONE=UI-R-CA1-bcb-f-05-0-UI /FEA=EST /CNT=7 /TID=Rn.63630.1 /TIER=Stack /STK=7 /UG=Rn.63630 /UG_TITLE=ESTs BF396127 1390016_at BF415854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415854 /DB_XREF=gi:11403843 /DB_XREF=UI-R-CA1-bkf-g-03-0-UI.s1 /CLONE=UI-R-CA1-bkf-g-03-0-UI /FEA=EST /CNT=8 /TID=Rn.62838.1 /TIER=Stack /STK=7 /UG=Rn.62838 /UG_TITLE=ESTs BF415854 1390017_at BF393931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393931 /DB_XREF=gi:11378795 /DB_XREF=UI-R-CA0-bgw-g-07-0-UI.s1 /CLONE=UI-R-CA0-bgw-g-07-0-UI /FEA=EST /CNT=7 /TID=Rn.22198.2 /TIER=Stack /STK=7 /UG=Rn.22198 /LL=64057 /UG_GENE=Bral1 /UG_TITLE=brain link protein 1 BF393931 Hyaluronan and proteoglycan link protein 2 Hapln2 64057 NM_022285 0007155 // cell adhesion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // inferred from electronic annotation 1390018_at BF400755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400755 /DB_XREF=gi:11388730 /DB_XREF=UI-R-CA0-bhf-b-12-0-UI.s1 /CLONE=UI-R-CA0-bhf-b-12-0-UI /FEA=EST /CNT=7 /TID=Rn.60143.1 /TIER=Stack /STK=7 /UG=Rn.60143 /UG_TITLE=ESTs BF400755 1390019_at BM390456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390456 /DB_XREF=gi:18190509 /DB_XREF=UI-R-CN1-cjq-f-10-0-UI.s1 /CLONE=UI-R-CN1-cjq-f-10-0-UI /FEA=EST /CNT=119 /TID=Rn.9454.3 /TIER=Stack /STK=6 /UG=Rn.9454 /UG_TITLE=ESTs, Highly similar to H33_HUMAN HISTONE H3.3 (M.musculus) BM390456 H3 histone, family 3B H3f3b 117056 NM_053985 0006334 // nucleosome assembly // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1390020_at BI277513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277513 /DB_XREF=gi:14923460 /DB_XREF=UI-R-CY0-bxs-a-11-0-UI.s1 /CLONE=UI-R-CY0-bxs-a-11-0-UI /FEA=EST /CNT=37 /TID=Rn.3648.1 /TIER=Stack /STK=6 /UG=Rn.3648 /UG_TITLE=ESTs BI277513 1390021_at BM391206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391206 /DB_XREF=gi:18191259 /DB_XREF=UI-R-DY0-ckq-o-01-0-UI.s1 /CLONE=UI-R-DY0-ckq-o-01-0-UI /FEA=EST /CNT=33 /TID=Rn.11688.1 /TIER=Stack /STK=6 /UG=Rn.11688 /UG_TITLE=ESTs, Highly similar to 0506206A histone H2B (R.norvegicus) BM391206 histone cluster 1, H2bh Hist1h2bh 306945 NM_001107352 0006334 // nucleosome assembly // inferred from electronic annotation /// 0042742 // defense response to bacterium // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1390022_at AA946538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946538 /DB_XREF=gi:3106454 /DB_XREF=EST202037 /CLONE=RSPAZ64 /FEA=EST /CNT=27 /TID=Rn.1639.1 /TIER=Stack /STK=6 /UG=Rn.1639 /UG_TITLE=ESTs, Highly similar to AR16_HUMAN ARP23 COMPLEX 16 KDA SUBUNIT (H.sapiens) AA946538 actin related protein 2/3 complex, subunit 5 Arpc5 360854 NM_001025717 0030833 // regulation of actin filament polymerization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0042995 // cell projection // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390023_at AI171686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171686 /DB_XREF=gi:3711726 /DB_XREF=EST217663 /CLONE=RMUBO36 /FEA=EST /CNT=25 /TID=Rn.2473.1 /TIER=Stack /STK=6 /UG=Rn.2473 /UG_TITLE=ESTs AI171686 hypothetical protein LOC680039 LOC680039 680039 NM_001109388 1390024_at AI237685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237685 /DB_XREF=gi:3831191 /DB_XREF=EST234247 /CLONE=RPLDC55 /FEA=EST /CNT=23 /TID=Rn.7958.1 /TIER=Stack /STK=6 /UG=Rn.7958 /UG_TITLE=ESTs AI237685 1390025_at AI169230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169230 /DB_XREF=gi:3705538 /DB_XREF=EST215065 /CLONE=RKIBP09 /FEA=EST /CNT=21 /TID=Rn.6585.1 /TIER=Stack /STK=6 /UG=Rn.6585 /UG_TITLE=ESTs AI169230 Retinitis pigmentosa 9 (human) Rp9 363032 NM_001108756 0005785 // signal recognition particle receptor complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1390026_at AI231792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231792 /DB_XREF=gi:3815672 /DB_XREF=EST228480 /CLONE=RHECO33 /FEA=EST /CNT=21 /TID=Rn.2699.1 /TIER=Stack /STK=6 /UG=Rn.2699 /UG_TITLE=ESTs, Highly similar to BAG3_MOUSE BAG-FAMILY MOLECULAR CHAPERONE REGULATOR-3 (BCL-2 BINDING ATHANOGENE-3) (BAG-3) (BCL-2-BINDING PROTEIN BIS) (M.musculus) AI231792 Bcl2-associated athanogene 3 Bag3 293524 NM_001011936 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0021510 // spinal cord development // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1390027_at AI137190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137190 /DB_XREF=gi:3637967 /DB_XREF=UI-R-C2p-oh-h-09-0-UI.s1 /CLONE=UI-R-C2p-oh-h-09-0-UI /FEA=EST /CNT=26 /TID=Rn.8650.1 /TIER=Stack /STK=6 /UG=Rn.8650 /UG_TITLE=ESTs, Weakly similar to I58376 hypothetical protein unp - mouse (M.musculus) AI137190 ubiquitin specific peptidase 8 Usp8 296121 NM_001106502 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007032 // endosome organization // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0070536 // protein K63-linked deubiquitination // not recorded /// 0071108 // protein K48-linked deubiquitination // not recorded 0005622 // intracellular // not recorded /// 0005769 // early endosome // not recorded /// 0005829 // cytosol // not recorded /// 0019897 // extrinsic to plasma membrane // not recorded 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1390028_at BE096356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096356 /DB_XREF=gi:8487287 /DB_XREF=UI-R-BU0-apf-b-04-0-UI.s1 /CLONE=UI-R-BU0-apf-b-04-0-UI /FEA=EST /CNT=18 /TID=Rn.11859.1 /TIER=Stack /STK=6 /UG=Rn.11859 /UG_TITLE=ESTs BE096356 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 Dyrk2 314862 NM_001108100 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded /// 0045725 // positive regulation of glycogen biosynthetic process // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000287 // magnesium ion binding // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0030145 // manganese ion binding // not recorded 1390029_at AA945898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945898 /DB_XREF=gi:3105814 /DB_XREF=EST201397 /CLONE=RLUAW67 /FEA=EST /CNT=13 /TID=Rn.22126.1 /TIER=Stack /STK=6 /UG=Rn.22126 /UG_TITLE=ESTs AA945898 transmembrane protein 110 Tmem110 361110 NM_198774 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1390030_at BI284294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284294 /DB_XREF=gi:14936840 /DB_XREF=UI-R-CX0s-ccq-d-12-0-UI.s1 /CLONE=UI-R-CX0s-ccq-d-12-0-UI /FEA=EST /CNT=15 /TID=Rn.6983.1 /TIER=Stack /STK=6 /UG=Rn.6983 /UG_TITLE=ESTs BI284294 hypermethylated in cancer 2 Hic2 287940 NM_001105862 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390031_at BG378798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378798 /DB_XREF=gi:13303270 /DB_XREF=UI-R-CV1-bvt-a-01-0-UI.s1 /CLONE=UI-R-CV1-bvt-a-01-0-UI /FEA=EST /CNT=14 /TID=Rn.3869.1 /TIER=Stack /STK=6 /UG=Rn.3869 /UG_TITLE=ESTs, Weakly similar to T15476 hypothetical protein C09F5.2 - Caenorhabditis elegans (C.elegans) BG378798 ORAI calcium release-activated calcium modulator 1 Orai1 304496 NM_001013982 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0051924 // regulation of calcium ion transport // not recorded /// 0051924 // regulation of calcium ion transport // inferred from electronic annotation /// 0051928 // positive regulation of calcium ion transport // not recorded /// 0051928 // positive regulation of calcium ion transport // inferred from sequence or structural similarity /// 0051928 // positive regulation of calcium ion transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015279 // store-operated calcium channel activity // not recorded /// 0015279 // store-operated calcium channel activity // inferred from sequence or structural similarity /// 0015279 // store-operated calcium channel activity // inferred from electronic annotation 1390032_at BG374052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374052 /DB_XREF=gi:13298524 /DB_XREF=UI-R-CV1-bsl-h-04-0-UI.s1 /CLONE=UI-R-CV1-bsl-h-04-0-UI /FEA=EST /CNT=13 /TID=Rn.12972.1 /TIER=Stack /STK=6 /UG=Rn.12972 /UG_TITLE=ESTs, Weakly similar to HUD RAT PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD HOMOLOG (R.norvegicus) BG374052 RNA binding motif, single stranded interacting protein 2 Rbms2 288771 NM_001025403 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1390033_at BG378062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378062 /DB_XREF=gi:13302534 /DB_XREF=UI-R-CT0-bvn-d-11-0-UI.s1 /CLONE=UI-R-CT0-bvn-d-11-0-UI /FEA=EST /CNT=12 /TID=Rn.27533.1 /TIER=Stack /STK=6 /UG=Rn.27533 /UG_TITLE=ESTs BG378062 cell adhesion molecule 3 Cadm3 360882 NM_001047103 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // not recorded /// 0007157 // heterophilic cell-cell adhesion // not recorded /// 0008104 // protein localization // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0042803 // protein homodimerization activity // not recorded 1390034_at BF393945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393945 /DB_XREF=gi:11378850 /DB_XREF=UI-R-CA0-bgx-e-04-0-UI.s1 /CLONE=UI-R-CA0-bgx-e-04-0-UI /FEA=EST /CNT=12 /TID=Rn.25545.1 /TIER=Stack /STK=6 /UG=Rn.25545 /UG_TITLE=ESTs, Moderately similar to KIAA0351 (H.sapiens) BF393945 Ral GEF with PH domain and SH3 binding motif 2 Ralgps2 304887 NM_001100680 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390035_at BI297073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297073 /DB_XREF=gi:14962123 /DB_XREF=UI-R-DK0-cdt-a-02-0-UI.s1 /CLONE=UI-R-DK0-cdt-a-02-0-UI /FEA=EST /CNT=11 /TID=Rn.23222.1 /TIER=Stack /STK=6 /UG=Rn.23222 /UG_TITLE=ESTs, Weakly similar to S49789 hypothetical protein YIL091c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BI297073 similar to hypothetical protein MGC29875; novel putative protein similar to YIL091C yeast hypothetical 84 kD protein from SGA1-KTR7 LOC305076 305076 NM_001013986 0007275 // multicellular organismal development // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1390036_at BI289867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289867 /DB_XREF=gi:14947885 /DB_XREF=UI-R-DK0-cfp-b-12-0-UI.s1 /CLONE=UI-R-DK0-cfp-b-12-0-UI /FEA=EST /CNT=14 /TID=Rn.17243.1 /TIER=Stack /STK=6 /UG=Rn.17243 /UG_TITLE=ESTs, Weakly similar to monocarboxylate transporter homologue MCT6 (H.sapiens) BI289867 solute carrier family 16, member 6 (monocarboxylic acid transporter 7) Slc16a6 303772 NM_198760 0055085 // transmembrane transport // inferred from electronic annotation 1390037_at AI102026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102026 /DB_XREF=gi:4134049 /DB_XREF=EST211315 /CLONE=RBRBY10 /FEA=EST /CNT=11 /TID=Rn.7222.1 /TIER=Stack /STK=6 /UG=Rn.7222 /UG_TITLE=ESTs AI102026 Na+/K+ transporting ATPase interacting 4 Nkain4 296469 NM_001106550 1390038_at BE109625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109625 /DB_XREF=gi:8501730 /DB_XREF=UI-R-BJ1-avq-c-10-0-UI.s1 /CLONE=UI-R-BJ1-avq-c-10-0-UI /FEA=EST /CNT=10 /TID=Rn.6278.2 /TIER=Stack /STK=6 /UG=Rn.6278 /LL=64532 /UG_GENE=Adcy5 /UG_TITLE=adenylyl cyclase type V BE109625 Adenylate cyclase 5 Adcy5 64532 NM_022600 0001973 // adenosine receptor signaling pathway // not recorded /// 0006171 // cAMP biosynthetic process // inferred from direct assay /// 0006171 // cAMP biosynthetic process // not recorded /// 0006171 // cAMP biosynthetic process // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007191 // activation of adenylate cyclase activity by dopamine receptor signaling pathway // not recorded /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007195 // inhibition of adenylate cyclase activity by dopamine receptor signaling pathway // not recorded /// 0007626 // locomotory behavior // not recorded /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0034199 // activation of protein kinase A activity // not recorded /// 0050885 // neuromuscular process controlling balance // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from direct assay /// 0044424 // intracellular part // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004016 // adenylate cyclase activity // inferred from direct assay /// 0004016 // adenylate cyclase activity // inferred from electronic annotation /// 0004016 // adenylate cyclase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008294 // calcium- and calmodulin-responsive adenylate cyclase activity // inferred from direct assay /// 0016829 // lyase activity // inferred from electronic annotation /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390039_at AA800535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800535 /DB_XREF=gi:4131505 /DB_XREF=EST190032 /CLONE=RLUAB20 /FEA=EST /CNT=10 /TID=Rn.8573.1 /TIER=Stack /STK=6 /UG=Rn.8573 /UG_TITLE=ESTs, Weakly similar to T47144 hypothetical protein DKFZp761E1347.1 (H.sapiens) AA800535 zinc finger, DHHC-type containing 3 Zdhhc3 301081 NM_001039014 0006605 // protein targeting // inferred from electronic annotation /// 0006605 // protein targeting // not recorded /// 0018345 // protein palmitoylation // inferred from electronic annotation /// 0018345 // protein palmitoylation // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0008270 // zinc ion binding // inferred from electronic annotation /// 0016409 // palmitoyltransferase activity // inferred from electronic annotation /// 0016409 // palmitoyltransferase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1390040_at AA851481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851481 /DB_XREF=gi:2939021 /DB_XREF=EST194249 /CLONE=RPLAH12 /FEA=EST /CNT=10 /TID=Rn.24872.1 /TIER=Stack /STK=6 /UG=Rn.24872 /UG_TITLE=ESTs, Highly similar to JC2472 brain and reproductive organ-expressed protein (H.sapiens) AA851481 brain and reproductive organ-expressed protein Bre 362704 NM_199270 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // not recorded /// 0006302 // double-strand break repair // inferred from sequence or structural similarity /// 0006915 // apoptosis // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from sequence or structural similarity /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010212 // response to ionizing radiation // not recorded /// 0010212 // response to ionizing radiation // inferred from sequence or structural similarity /// 0016568 // chromatin modification // inferred from electronic annotation /// 0031572 // G2/M transition DNA damage checkpoint // not recorded /// 0031572 // G2/M transition DNA damage checkpoint // inferred from sequence or structural similarity /// 0045739 // positive regulation of DNA repair // not recorded /// 0045739 // positive regulation of DNA repair // inferred from sequence or structural similarity /// 0045768 // positive regulation of anti-apoptosis // not recorded /// 0045768 // positive regulation of anti-apoptosis // inferred from sequence or structural similarity 0000152 // nuclear ubiquitin ligase complex // not recorded /// 0000152 // nuclear ubiquitin ligase complex // inferred from sequence or structural similarity /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0070531 // BRCA1-A complex // not recorded /// 0070531 // BRCA1-A complex // inferred from sequence or structural similarity /// 0070552 // BRISC complex // not recorded /// 0070552 // BRISC complex // inferred from sequence or structural similarity 0005164 // tumor necrosis factor receptor binding // not recorded /// 0005164 // tumor necrosis factor receptor binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0031593 // polyubiquitin binding // not recorded /// 0031593 // polyubiquitin binding // inferred from sequence or structural similarity 1390041_at AW434258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434258 /DB_XREF=gi:6965565 /DB_XREF=UI-R-BJ0p-afw-b-03-0-UI.s1 /CLONE=UI-R-BJ0p-afw-b-03-0-UI /FEA=EST /CNT=11 /TID=Rn.22110.1 /TIER=Stack /STK=6 /UG=Rn.22110 /UG_TITLE=ESTs, Weakly similar to SX10 RAT TRANSCRIPTION FACTOR SOX-10 (R.norvegicus) AW434258 SRY (sex determining region Y)-box 17 Sox17 312936 NM_001107902 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001706 // endoderm formation // inferred from electronic annotation /// 0001706 // endoderm formation // not recorded /// 0001947 // heart looping // inferred from electronic annotation /// 0001947 // heart looping // not recorded /// 0003151 // outflow tract morphogenesis // inferred from electronic annotation /// 0003151 // outflow tract morphogenesis // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0031648 // protein destabilization // inferred from electronic annotation /// 0031648 // protein destabilization // not recorded /// 0035050 // embryonic heart tube development // inferred from electronic annotation /// 0035050 // embryonic heart tube development // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0050821 // protein stabilization // inferred from electronic annotation /// 0050821 // protein stabilization // not recorded /// 0060214 // endocardium formation // inferred from electronic annotation /// 0060214 // endocardium formation // not recorded /// 0060912 // cardiac cell fate specification // inferred from electronic annotation /// 0060913 // cardiac cell fate determination // not recorded /// 0060956 // endocardial cell differentiation // inferred from electronic annotation /// 0060956 // endocardial cell differentiation // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded 1390042_at AI071166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071166 /DB_XREF=gi:3397381 /DB_XREF=UI-R-C2-my-b-05-0-UI.s1 /CLONE=UI-R-C2-my-b-05-0-UI /FEA=EST /CNT=10 /TID=Rn.8661.1 /TIER=Stack /STK=6 /UG=Rn.8661 /UG_TITLE=ESTs AI071166 transmembrane protein 140 Tmem140 362334 NM_001009709 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1390043_at BF389915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389915 /DB_XREF=gi:11374756 /DB_XREF=UI-R-BS2-bdq-b-11-0-UI.s1 /CLONE=UI-R-BS2-bdq-b-11-0-UI /FEA=EST /CNT=9 /TID=Rn.44789.1 /TIER=Stack /STK=6 /UG=Rn.44789 /UG_TITLE=ESTs, Weakly similar to T30967 transcription activator SRG3 - mouse (M.musculus) BF389915 similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin c2 LOC685179 685179 XM_001055673 /// XM_001055738 /// XM_001055795 /// XM_002726856 /// XM_002729767 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006338 // chromatin remodeling // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0000785 // chromatin // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0016514 // SWI/SNF complex // not recorded /// 0017053 // transcriptional repressor complex // not recorded /// 0071564 // npBAF complex // not recorded /// 0071565 // nBAF complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390044_at AI501288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501288 /DB_XREF=gi:4399139 /DB_XREF=UI-R-C2p-ru-b-03-0-UI.s1 /CLONE=UI-R-C2p-ru-b-03-0-UI /FEA=EST /CNT=9 /TID=Rn.22434.1 /TIER=Stack /STK=6 /UG=Rn.22434 /UG_TITLE=ESTs, Highly similar to JC5702 ErbB kinase activator alpha2a, brain and thymus - rat (R.norvegicus) AI501288 Neuregulin 2 Nrg2 432361 NM_001136151 0007173 // epidermal growth factor receptor signaling pathway // inferred from direct assay /// 0009790 // embryo development // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005006 // epidermal growth factor receptor activity // inferred from direct assay /// 0005102 // receptor binding // inferred from electronic annotation /// 0005154 // epidermal growth factor receptor binding // inferred from direct assay /// 0008083 // growth factor activity // inferred from electronic annotation /// 0043125 // ErbB-3 class receptor binding // inferred from direct assay 1390045_at AI146251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146251 /DB_XREF=gi:3668050 /DB_XREF=UI-R-BT0-qh-f-10-0-UI.s1 /CLONE=UI-R-BT0-qh-f-10-0-UI /FEA=EST /CNT=9 /TID=Rn.22484.1 /TIER=Stack /STK=6 /UG=Rn.22484 /UG_TITLE=ESTs, Highly similar to ARX MOUSE HOMEOBOX PROTEIN ARX (M.musculus) AI146251 aristaless related homeobox Arx 317268 NM_001100174 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0021759 // globus pallidus development // inferred from electronic annotation /// 0021759 // globus pallidus development // not recorded /// 0021772 // olfactory bulb development // inferred from electronic annotation /// 0021772 // olfactory bulb development // not recorded /// 0021800 // cerebral cortex tangential migration // inferred from electronic annotation /// 0021800 // cerebral cortex tangential migration // not recorded /// 0021831 // embryonic olfactory bulb interneuron precursor migration // inferred from electronic annotation /// 0021831 // embryonic olfactory bulb interneuron precursor migration // not recorded /// 0021846 // cell proliferation in forebrain // inferred from electronic annotation /// 0021846 // cell proliferation in forebrain // not recorded /// 0021853 // cerebral cortex GABAergic interneuron migration // inferred from electronic annotation /// 0021853 // cerebral cortex GABAergic interneuron migration // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0046622 // positive regulation of organ growth // inferred from electronic annotation /// 0046622 // positive regulation of organ growth // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1390046_at BI288110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288110 /DB_XREF=gi:14944370 /DB_XREF=UI-R-DK0-cdc-b-01-0-UI.s1 /CLONE=UI-R-DK0-cdc-b-01-0-UI /FEA=EST /CNT=9 /TID=Rn.22125.1 /TIER=Stack /STK=6 /UG=Rn.22125 /UG_TITLE=ESTs BI288110 tubulin, gamma complex associated protein 2 Tubgcp2 309098 NM_001107560 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation 0000922 // spindle pole // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation 1390047_at BG378174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378174 /DB_XREF=gi:13302646 /DB_XREF=UI-R-CV1-bvo-h-03-0-UI.s1 /CLONE=UI-R-CV1-bvo-h-03-0-UI /FEA=EST /CNT=9 /TID=Rn.4181.1 /TIER=Stack /STK=6 /UG=Rn.4181 /UG_TITLE=ESTs BG378174 1390048_at BF408990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408990 /DB_XREF=gi:11396965 /DB_XREF=UI-R-BJ2-bpn-g-05-0-UI.s1 /CLONE=UI-R-BJ2-bpn-g-05-0-UI /FEA=EST /CNT=9 /TID=Rn.38798.1 /TIER=Stack /STK=6 /UG=Rn.38798 /UG_TITLE=ESTs, Weakly similar to T31639 hypothetical protein Y57A10A.q - Caenorhabditis elegans (C.elegans) BF408990 serine/arginine repetitive matrix 2 Srrm2 302969 XM_001056343 /// XM_220207 0015030 // Cajal body // not recorded /// 0015030 // Cajal body // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0070742 // C2H2 zinc finger domain binding // not recorded /// 0070742 // C2H2 zinc finger domain binding // inferred from electronic annotation 1390049_at BI298356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298356 /DB_XREF=gi:14974636 /DB_XREF=UI-R-CV2-cho-d-01-0-UI.s1 /CLONE=UI-R-CV2-cho-d-01-0-UI /FEA=EST /CNT=14 /TID=Rn.34417.1 /TIER=Stack /STK=6 /UG=Rn.34417 /UG_TITLE=ESTs, Weakly similar to four and a half LIM domains 2 (Rattus norvegicus) (R.norvegicus) BI298356 four and a half LIM domains 1 Fhl1 25177 NM_001033926 /// NM_145669 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390050_at BI288898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288898 /DB_XREF=gi:14945925 /DB_XREF=UI-R-CS0s-cbl-e-08-0-UI.s2 /CLONE=UI-R-CS0s-cbl-e-08-0-UI /FEA=EST /CNT=10 /TID=Rn.6029.1 /TIER=Stack /STK=6 /UG=Rn.6029 /UG_TITLE=ESTs, Weakly similar to KE4_MOUSE HISTIDINE-RICH MEMBRANE PROTEIN KE4 (M.musculus) BI288898 similar to Golgi phosphoprotein 2 (Golgi membrane protein GP73) LOC680692 680692 XM_001056825 /// XM_002725221 1390051_at BI299098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299098 /DB_XREF=gi:14975378 /DB_XREF=UI-R-CV2-chr-b-09-0-UI.s1 /CLONE=UI-R-CV2-chr-b-09-0-UI /FEA=EST /CNT=9 /TID=Rn.38985.1 /TIER=Stack /STK=6 /UG=Rn.38985 /UG_TITLE=ESTs BI299098 similar to mKIAA0774 protein RGD1562533 498136 NM_001100989 1390052_at BF386416 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386416 /DB_XREF=gi:11371240 /DB_XREF=UI-R-CA1-bbd-c-05-0-UI.s1 /CLONE=UI-R-CA1-bbd-c-05-0-UI /FEA=EST /CNT=7 /TID=Rn.48365.1 /TIER=Stack /STK=6 /UG=Rn.48365 /UG_TITLE=ESTs BF386416 1390053_at BE099903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099903 /DB_XREF=gi:8491786 /DB_XREF=UI-R-BJ1-atl-e-04-0-UI.s1 /CLONE=UI-R-BJ1-atl-e-04-0-UI /FEA=EST /CNT=7 /TID=Rn.8079.1 /TIER=Stack /STK=6 /UG=Rn.8079 /UG_TITLE=ESTs BE099903 similar to chromosome 7 open reading frame 11 LOC684996 684996 NM_001109452 1390054_at BF412571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412571 /DB_XREF=gi:11400560 /DB_XREF=UI-R-BT1-bnp-c-08-0-UI.s1 /CLONE=UI-R-BT1-bnp-c-08-0-UI /FEA=EST /CNT=7 /TID=Rn.22971.1 /TIER=Stack /STK=6 /UG=Rn.22971 /UG_TITLE=ESTs, Highly similar to ENC1_MOUSE ECTODERM-NEURAL CORTEX-1 PROTEIN (ENC-1) (M.musculus) BF412571 1390055_at AI044108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044108 /DB_XREF=gi:3291011 /DB_XREF=UI-R-C1-jv-d-03-0-UI.s1 /CLONE=UI-R-C1-jv-d-03-0-UI /FEA=EST /CNT=7 /TID=Rn.22580.1 /TIER=Stack /STK=6 /UG=Rn.22580 /UG_TITLE=ESTs AI044108 Similar to KIAA1357 protein RGD1308124 308631 XM_002725449 /// XM_002725450 /// XM_002728625 /// XM_002728626 1390056_at BE111525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111525 /DB_XREF=gi:8503630 /DB_XREF=UI-R-BJ1-avb-g-12-0-UI.s1 /CLONE=UI-R-BJ1-avb-g-12-0-UI /FEA=EST /CNT=7 /TID=Rn.35519.1 /TIER=Stack /STK=6 /UG=Rn.35519 /UG_TITLE=ESTs, Weakly similar to HCK RAT TYROSINE-PROTEIN KINASE HCK (R.norvegicus) BE111525 NCK adaptor protein 2 Nck2 316369 NM_001108216 0007015 // actin filament organization // not recorded /// 0016477 // cell migration // not recorded /// 0030032 // lamellipodium assembly // not recorded /// 0030838 // positive regulation of actin filament polymerization // not recorded /// 0042102 // positive regulation of T cell proliferation // not recorded 0012506 // vesicle membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1390057_at AA875554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875554 /DB_XREF=gi:4231433 /DB_XREF=UI-R-E0-cm-a-03-0-UI.s1 /CLONE=UI-R-E0-cm-a-03-0-UI /FEA=EST /CNT=7 /TID=Rn.33352.1 /TIER=Stack /STK=6 /UG=Rn.33352 /UG_TITLE=ESTs AA875554 1390058_at BI291197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291197 /DB_XREF=gi:14950511 /DB_XREF=UI-R-DK0-cgh-h-05-0-UI.s1 /CLONE=UI-R-DK0-cgh-h-05-0-UI /FEA=EST /CNT=13 /TID=Rn.11503.1 /TIER=Stack /STK=6 /UG=Rn.11503 /UG_TITLE=ESTs, Moderately similar to YZX2_HUMAN HYPOTHETICAL 10.9 KDA PROTEIN DKFZP547E101 (H.sapiens) BI291197 similar to DKFZP547E1010 protein LOC361990 361990 NM_001014175 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1390059_at AW523267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523267 /DB_XREF=gi:7165652 /DB_XREF=UI-R-BO0-aht-c-07-0-UI.s1 /CLONE=UI-R-BO0-aht-c-07-0-UI /FEA=EST /CNT=7 /TID=Rn.23509.1 /TIER=Stack /STK=6 /UG=Rn.23509 /UG_TITLE=ESTs, Highly similar to UBPP_MOUSE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 25 (UBIQUITIN THIOLESTERASE 25) (UBIQUITIN-SPECIFIC PROCESSING PROTEASE 25) (DEUBIQUITINATING ENZYME 25) (MUSP25) (M.musculus) AW523267 Ubiquitin specific peptidase 25 Usp25 304150 NM_001107114 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1390060_at BF404459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404459 /DB_XREF=gi:11392434 /DB_XREF=UI-R-CA1-bif-e-12-0-UI.s1 /CLONE=UI-R-CA1-bif-e-12-0-UI /FEA=EST /CNT=6 /TID=Rn.63340.1 /TIER=Stack /STK=6 /UG=Rn.63340 /UG_TITLE=ESTs BF404459 1390061_at BI289643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289643 /DB_XREF=gi:14947422 /DB_XREF=UI-R-DK0-cfi-d-07-0-UI.s1 /CLONE=UI-R-DK0-cfi-d-07-0-UI /FEA=EST /CNT=6 /TID=Rn.45306.1 /TIER=Stack /STK=6 /UG=Rn.45306 /UG_TITLE=ESTs BI289643 Troponin T type 2 (cardiac) Tnnt2 24837 NM_012676 0006936 // muscle contraction // inferred from mutant phenotype /// 0006936 // muscle contraction // not recorded /// 0006936 // muscle contraction // traceable author statement /// 0006937 // regulation of muscle contraction // inferred from direct assay /// 0007507 // heart development // not recorded /// 0008016 // regulation of heart contraction // not recorded /// 0030049 // muscle filament sliding // not recorded /// 0032780 // negative regulation of ATPase activity // not recorded /// 0032781 // positive regulation of ATPase activity // not recorded /// 0032972 // regulation of muscle filament sliding speed // inferred from mutant phenotype /// 0045214 // sarcomere organization // not recorded /// 0051291 // protein heterooligomerization // inferred from physical interaction /// 0051592 // response to calcium ion // not recorded /// 0051764 // actin crosslink formation // inferred from direct assay /// 0055009 // atrial cardiac muscle tissue morphogenesis // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0060048 // cardiac muscle contraction // inferred from direct assay 0005737 // cytoplasm // not recorded /// 0005861 // troponin complex // inferred from direct assay /// 0005861 // troponin complex // not recorded /// 0005865 // striated muscle thin filament // not recorded /// 0030016 // myofibril // inferred from direct assay /// 0030016 // myofibril // not recorded /// 0030017 // sarcomere // not recorded 0003779 // actin binding // not recorded /// 0005200 // structural constituent of cytoskeleton // not recorded /// 0005523 // tropomyosin binding // not recorded /// 0016887 // ATPase activity // not recorded /// 0030172 // troponin C binding // not recorded /// 0030674 // protein binding, bridging // inferred from direct assay /// 0031013 // troponin I binding // inferred from physical interaction /// 0031013 // troponin I binding // not recorded 1390062_at BF413176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413176 /DB_XREF=gi:11401165 /DB_XREF=UI-R-BT1-bnx-f-02-0-UI.s1 /CLONE=UI-R-BT1-bnx-f-02-0-UI /FEA=EST /CNT=6 /TID=Rn.49512.1 /TIER=Stack /STK=6 /UG=Rn.49512 /UG_TITLE=ESTs BF413176 1390063_at BG380473 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380473 /DB_XREF=gi:13304945 /DB_XREF=UI-R-CT0-btx-f-10-0-UI.s1 /CLONE=UI-R-CT0-btx-f-10-0-UI /FEA=EST /CNT=6 /TID=Rn.43071.1 /TIER=Stack /STK=6 /UG=Rn.43071 /UG_TITLE=ESTs BG380473 microfibrillar-associated protein 3 Mfap3 287299 NM_001007609 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1390064_at BF393850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393850 /DB_XREF=gi:11378713 /DB_XREF=UI-R-CA0-bgv-f-09-0-UI.s1 /CLONE=UI-R-CA0-bgv-f-09-0-UI /FEA=EST /CNT=6 /TID=Rn.64398.1 /TIER=Stack /STK=6 /UG=Rn.64398 /UG_TITLE=ESTs BF393850 1390065_at BE096685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096685 /DB_XREF=gi:8487575 /DB_XREF=UI-R-BU0-api-f-05-0-UI.s1 /CLONE=UI-R-BU0-api-f-05-0-UI /FEA=EST /CNT=6 /TID=Rn.40739.1 /TIER=Stack /STK=6 /UG=Rn.40739 /UG_TITLE=ESTs BE096685 potassium channel, subfamily V, member 2 Kcnv2 294065 NM_001106370 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1390066_at AI102726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102726 /DB_XREF=gi:3707424 /DB_XREF=EST212015 /CLONE=REMBR76 /FEA=EST /CNT=6 /TID=Rn.40794.1 /TIER=Stack /STK=6 /UG=Rn.40794 /UG_TITLE=ESTs AI102726 nuclear receptor subfamily 2, group F, member 6 Nr2f6 245980 NM_139113 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0043153 // entrainment of circadian clock by photoperiod // inferred from electronic annotation /// 0043153 // entrainment of circadian clock by photoperiod // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048666 // neuron development // inferred from electronic annotation /// 0048666 // neuron development // not recorded /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // inferred from electronic annotation /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390067_at BF403821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403821 /DB_XREF=gi:11391796 /DB_XREF=UI-R-CA1-bix-f-01-0-UI.s1 /CLONE=UI-R-CA1-bix-f-01-0-UI /FEA=EST /CNT=6 /TID=Rn.60460.1 /TIER=Stack /STK=6 /UG=Rn.60460 /UG_TITLE=ESTs BF403821 1390068_at AI179123 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179123 /DB_XREF=gi:3729761 /DB_XREF=EST222807 /CLONE=RSPCC15 /FEA=EST /CNT=6 /TID=Rn.37185.1 /TIER=Stack /STK=6 /UG=Rn.37185 /UG_TITLE=ESTs, Weakly similar to NF-E2-related factor 2 (Rattus norvegicus) (R.norvegicus) AI179123 nuclear factor, erythroid derived 2,-like 1 Nfe2l1 360610 NM_001108293 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1390069_at BI299977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299977 /DB_XREF=gi:14976257 /DB_XREF=UI-R-CV2-chz-e-04-0-UI.s1 /CLONE=UI-R-CV2-chz-e-04-0-UI /FEA=EST /CNT=6 /TID=Rn.76511.1 /TIER=Stack /STK=6 /UG=Rn.76511 /UG_TITLE=ESTs BI299977 1390070_at BI296990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296990 /DB_XREF=gi:14961958 /DB_XREF=UI-R-DK0-cgj-h-11-0-UI.s1 /CLONE=UI-R-DK0-cgj-h-11-0-UI /FEA=EST /CNT=6 /TID=Rn.32718.1 /TIER=Stack /STK=6 /UG=Rn.32718 /UG_TITLE=ESTs BI296990 1390071_at AI575729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575729 /DB_XREF=gi:4560105 /DB_XREF=UI-R-G0-uu-h-11-0-UI.s1 /CLONE=UI-R-G0-uu-h-11-0-UI /FEA=EST /CNT=6 /TID=Rn.23827.1 /TIER=Stack /STK=6 /UG=Rn.23827 /UG_TITLE=ESTs AI575729 Rho GTPase activating protein 23 Arhgap23 303501 XM_001081375 /// XM_220918 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1390072_at BF401531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401531 /DB_XREF=gi:11389506 /DB_XREF=UI-R-CA0-bgl-f-08-0-UI.s1 /CLONE=UI-R-CA0-bgl-f-08-0-UI /FEA=EST /CNT=6 /TID=Rn.63142.1 /TIER=Stack /STK=6 /UG=Rn.63142 /UG_TITLE=ESTs BF401531 1390073_at AI715122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715122 /DB_XREF=gi:5032375 /DB_XREF=UI-R-Y0-abl-d-08-0-UI.s1 /CLONE=UI-R-Y0-abl-d-08-0-UI /FEA=EST /CNT=6 /TID=Rn.44948.1 /TIER=Stack /STK=6 /UG=Rn.44948 /UG_TITLE=ESTs AI715122 ankyrin repeat domain 43 Ankrd43 497903 XM_001073996 /// XM_573089 1390074_at BE111736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111736 /DB_XREF=gi:8503841 /DB_XREF=UI-R-BJ1-avx-c-01-0-UI.s1 /CLONE=UI-R-BJ1-avx-c-01-0-UI /FEA=EST /CNT=6 /TID=Rn.23043.1 /TIER=Stack /STK=6 /UG=Rn.23043 /UG_TITLE=ESTs, Weakly similar to NU98 RAT NUCLEAR PORE COMPLEX PROTEIN NUP98 (R.norvegicus) BE111736 nucleoporin 214 Nup214 296634 NM_001168559 0006406 // mRNA export from nucleus // not recorded /// 0006606 // protein import into nucleus // not recorded /// 0006611 // protein export from nucleus // not recorded /// 0051726 // regulation of cell cycle // not recorded 0005829 // cytosol // not recorded 0005487 // nucleocytoplasmic transporter activity // not recorded /// 0005515 // protein binding // not recorded 1390075_at AA955964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955964 /DB_XREF=gi:4238359 /DB_XREF=UI-R-E1-ff-d-02-0-UI.s1 /CLONE=UI-R-E1-ff-d-02-0-UI /FEA=EST /CNT=6 /TID=Rn.3505.1 /TIER=Stack /STK=6 /UG=Rn.3505 /UG_TITLE=ESTs AA955964 olfactomedin-like 2B Olfml2b 304960 NM_001107195 0030198 // extracellular matrix organization // not recorded 0031012 // extracellular matrix // not recorded 0042803 // protein homodimerization activity // not recorded /// 0050840 // extracellular matrix binding // not recorded 1390076_at BE109608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109608 /DB_XREF=gi:8501713 /DB_XREF=UI-R-BJ1-avq-b-02-0-UI.s1 /CLONE=UI-R-BJ1-avq-b-02-0-UI /FEA=EST /CNT=6 /TID=Rn.19481.2 /TIER=Stack /STK=6 /UG=Rn.19481 /LL=117560 /UG_GENE=Klf9 /UG_TITLE=Kruppel-like factor 9 BE109608 hypothetical protein LOC100365904 LOC100365904 100365904 XM_002725749 1390077_at AA956421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956421 /DB_XREF=gi:4238895 /DB_XREF=UI-R-E1-fj-f-10-0-UI.s1 /CLONE=UI-R-E1-fj-f-10-0-UI /FEA=EST /CNT=6 /TID=Rn.22154.1 /TIER=Stack /STK=6 /UG=Rn.22154 /UG_TITLE=ESTs, Highly similar to TRAM_HUMAN TRAM protein (Translocating chain-associating membrane protein) (H.sapiens) AA956421 Translocation associated membrane protein 1 Tram1 312903 NM_001007701 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1390078_at BF407131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407131 /DB_XREF=gi:11395106 /DB_XREF=UI-R-BJ2-bqw-a-05-0-UI.s1 /CLONE=UI-R-BJ2-bqw-a-05-0-UI /FEA=EST /CNT=6 /TID=Rn.41413.2 /TIER=Stack /STK=6 /UG=Rn.41413 /UG_TITLE=ESTs BF407131 1390079_at AI555453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555453 /DB_XREF=gi:4487816 /DB_XREF=UI-R-C2p-qq-b-11-0-UI.s1 /CLONE=UI-R-C2p-qq-b-11-0-UI /FEA=EST /CNT=6 /TID=Rn.19600.1 /TIER=Stack /STK=6 /UG=Rn.19600 /UG_TITLE=ESTs, Weakly similar to T24363 hypothetical protein T02E1.5 - Caenorhabditis elegans (C.elegans) AI555453 1390080_at AI549584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549584 /DB_XREF=gi:4467072 /DB_XREF=UI-R-C3-tt-f-11-0-UI.s1 /CLONE=UI-R-C3-tt-f-11-0-UI /FEA=EST /CNT=6 /TID=Rn.35241.1 /TIER=Stack /STK=6 /UG=Rn.35241 /UG_TITLE=ESTs AI549584 OTU domain containing 1 Otud1 498803 XM_001074167 /// XM_574086 1390081_at AW252608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252608 /DB_XREF=gi:6596199 /DB_XREF=UI-R-BJ0-add-e-09-0-UI.s1 /CLONE=UI-R-BJ0-add-e-09-0-UI /FEA=EST /CNT=6 /TID=Rn.44726.1 /TIER=Stack /STK=6 /UG=Rn.44726 /UG_TITLE=ESTs, Highly similar to IRX4_HUMAN IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX-4 (H.sapiens) AW252608 iroquois homeobox 4 Irx4 306655 NM_001107330 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048561 // establishment of organ orientation // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1390082_at BE110671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110671 /DB_XREF=gi:8502776 /DB_XREF=UI-R-BJ1-avu-f-08-0-UI.s1 /CLONE=UI-R-BJ1-avu-f-08-0-UI /FEA=EST /CNT=6 /TID=Rn.50506.2 /TIER=Stack /STK=6 /UG=Rn.50506 /UG_TITLE=Rattus norvegicus HIP1 protein mRNA, partial cds BE110671 huntingtin interacting protein 1 Hip1 192154 NM_001100475 0006897 // endocytosis // not recorded /// 0006897 // endocytosis // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from electronic annotation /// 0048260 // positive regulation of receptor-mediated endocytosis // not recorded /// 0048268 // clathrin coat assembly // inferred from direct assay /// 0048268 // clathrin coat assembly // not recorded /// 0048268 // clathrin coat assembly // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016021 // integral to membrane // traceable author statement /// 0030118 // clathrin coat // traceable author statement /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030276 // clathrin binding // inferred from direct assay /// 0030276 // clathrin binding // not recorded /// 0030276 // clathrin binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // not recorded 1390083_at BI289090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289090 /DB_XREF=gi:14946302 /DB_XREF=UI-R-DK0-cfe-d-07-0-UI.s1 /CLONE=UI-R-DK0-cfe-d-07-0-UI /FEA=EST /CNT=6 /TID=Rn.66960.1 /TIER=Stack /STK=6 /UG=Rn.66960 /UG_TITLE=ESTs BI289090 1390084_at BI300563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300563 /DB_XREF=gi:14976843 /DB_XREF=UI-R-CV2-cim-d-11-0-UI.s1 /CLONE=UI-R-CV2-cim-d-11-0-UI /FEA=EST /CNT=6 /TID=Rn.73448.1 /TIER=Stack /STK=6 /UG=Rn.73448 /UG_TITLE=ESTs BI300563 1390085_at BF406291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406291 /DB_XREF=gi:11394266 /DB_XREF=UI-R-CA1-bjf-d-21-0-UI.s1 /CLONE=UI-R-CA1-bjf-d-21-0-UI /FEA=EST /CNT=6 /TID=Rn.62405.1 /TIER=Stack /STK=6 /UG=Rn.62405 /UG_TITLE=ESTs BF406291 1390086_at BF404536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404536 /DB_XREF=gi:11392476 /DB_XREF=UI-R-CA1-big-b-08-0-UI.s1 /CLONE=UI-R-CA1-big-b-08-0-UI /FEA=EST /CNT=6 /TID=Rn.18717.1 /TIER=Stack /STK=6 /UG=Rn.18717 /UG_TITLE=ESTs BF404536 1390087_at BF410315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410315 /DB_XREF=gi:11398290 /DB_XREF=UI-R-CA1-bjw-a-10-0-UI.s1 /CLONE=UI-R-CA1-bjw-a-10-0-UI /FEA=EST /CNT=6 /TID=Rn.61656.1 /TIER=Stack /STK=6 /UG=Rn.61656 /UG_TITLE=ESTs BF410315 1390088_at BF403302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403302 /DB_XREF=gi:11391277 /DB_XREF=UI-R-CA1-biy-a-08-0-UI.s1 /CLONE=UI-R-CA1-biy-a-08-0-UI /FEA=EST /CNT=6 /TID=Rn.63116.1 /TIER=Stack /STK=6 /UG=Rn.63116 /UG_TITLE=ESTs, Highly similar to NOGG_RAT Noggin precursor (R.norvegicus) BF403302 noggin Nog 25495 NM_012990 0001501 // skeletal system development // not recorded /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0001649 // osteoblast differentiation // inferred from sequence or structural similarity /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001655 // urogenital system development // inferred from electronic annotation /// 0001655 // urogenital system development // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001837 // epithelial to mesenchymal transition // not recorded /// 0001837 // epithelial to mesenchymal transition // inferred from sequence or structural similarity /// 0001837 // epithelial to mesenchymal transition // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007417 // central nervous system development // not recorded /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0021915 // neural tube development // inferred from electronic annotation /// 0021915 // neural tube development // not recorded /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0021983 // pituitary gland development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030509 // BMP signaling pathway // not recorded /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030510 // regulation of BMP signaling pathway // not recorded /// 0030510 // regulation of BMP signaling pathway // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0030514 // negative regulation of BMP signaling pathway // inferred from sequence or structural similarity /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation /// 0030900 // forebrain development // inferred from expression pattern /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0035019 // somatic stem cell maintenance // not recorded /// 0042060 // wound healing // not recorded /// 0042060 // wound healing // inferred from sequence or structural similarity /// 0042060 // wound healing // inferred from electronic annotation /// 0042474 // middle ear morphogenesis // inferred from electronic annotation /// 0042474 // middle ear morphogenesis // not recorded /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // not recorded /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045664 // regulation of neuron differentiation // inferred from mutant phenotype /// 0048570 // notochord morphogenesis // inferred from electronic annotation /// 0048570 // notochord morphogenesis // not recorded /// 0048646 // anatomical structure formation involved in morphogenesis // inferred from electronic annotation /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded /// 0048706 // embryonic skeletal system development // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // not recorded /// 0048712 // negative regulation of astrocyte differentiation // inferred from mutant phenotype /// 0048712 // negative regulation of astrocyte differentiation // not recorded /// 0048712 // negative regulation of astrocyte differentiation // inferred from sequence or structural similarity /// 0048712 // negative regulation of astrocyte differentiation // inferred from electronic annotation /// 0048762 // mesenchymal cell differentiation // inferred from electronic annotation /// 0048762 // mesenchymal cell differentiation // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0051216 // cartilage development // inferred from electronic annotation /// 0060044 // negative regulation of cardiac muscle cell proliferation // not recorded /// 0060044 // negative regulation of cardiac muscle cell proliferation // inferred from sequence or structural similarity /// 0060044 // negative regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060173 // limb development // inferred from electronic annotation /// 0060173 // limb development // not recorded /// 0060272 // embryonic skeletal joint morphogenesis // inferred from electronic annotation /// 0060272 // embryonic skeletal joint morphogenesis // not recorded /// 0060302 // negative regulation of cytokine activity // inferred from electronic annotation /// 0060302 // negative regulation of cytokine activity // not recorded /// 0060513 // prostatic bud formation // inferred from electronic annotation /// 0060513 // prostatic bud formation // not recorded /// 0060676 // ureteric bud formation // inferred from electronic annotation /// 0060676 // ureteric bud formation // not recorded /// 0061037 // negative regulation of cartilage development // inferred from electronic annotation /// 0061037 // negative regulation of cartilage development // not recorded /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // not recorded /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from sequence or structural similarity /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0090193 // positive regulation of glomerulus development // not recorded /// 0090193 // positive regulation of glomerulus development // inferred from sequence or structural similarity /// 0090193 // positive regulation of glomerulus development // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019955 // cytokine binding // inferred from electronic annotation /// 0019955 // cytokine binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1390089_at BF403804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403804 /DB_XREF=gi:11391779 /DB_XREF=UI-R-CA1-bix-b-13-0-UI.s1 /CLONE=UI-R-CA1-bix-b-13-0-UI /FEA=EST /CNT=6 /TID=Rn.64381.1 /TIER=Stack /STK=6 /UG=Rn.64381 /UG_TITLE=ESTs BF403804 1390090_at AW534085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534085 /DB_XREF=gi:7176499 /DB_XREF=UI-R-C4-alp-a-03-0-UI.s1 /CLONE=UI-R-C4-alp-a-03-0-UI /FEA=EST /CNT=6 /TID=Rn.43648.1 /TIER=Stack /STK=6 /UG=Rn.43648 /UG_TITLE=ESTs AW534085 1390091_at AI409724 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409724 /DB_XREF=gi:4253228 /DB_XREF=EST238016 /CLONE=RPLDI78 /FEA=EST /CNT=6 /TID=Rn.13036.1 /TIER=Stack /STK=6 /UG=Rn.13036 /UG_TITLE=ESTs, Weakly similar to T14318 ubiquitin-protein ligase E3-alpha - mouse (M.musculus) AI409724 Similar to zinc finger protein 650 RGD1565257 311115 NM_001134550 1390092_at BF410328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410328 /DB_XREF=gi:11398303 /DB_XREF=UI-R-CA1-bjw-b-11-0-UI.s1 /CLONE=UI-R-CA1-bjw-b-11-0-UI /FEA=EST /CNT=6 /TID=Rn.61663.1 /TIER=Stack /STK=6 /UG=Rn.61663 /UG_TITLE=ESTs BF410328 1390093_at BF404417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404417 /DB_XREF=gi:11392392 /DB_XREF=UI-R-CA1-bif-a-09-0-UI.s1 /CLONE=UI-R-CA1-bif-a-09-0-UI /FEA=EST /CNT=6 /TID=Rn.61472.1 /TIER=Stack /STK=6 /UG=Rn.61472 /UG_TITLE=ESTs BF404417 1390094_at BE113889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113889 /DB_XREF=gi:8505994 /DB_XREF=UI-R-CA0-axe-f-04-0-UI.s1 /CLONE=UI-R-CA0-axe-f-04-0-UI /FEA=EST /CNT=6 /TID=Rn.52265.1 /TIER=Stack /STK=6 /UG=Rn.52265 /UG_TITLE=ESTs BE113889 1390095_at BE120144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120144 /DB_XREF=gi:8512249 /DB_XREF=UI-R-CA0-bap-b-02-0-UI.s1 /CLONE=UI-R-CA0-bap-b-02-0-UI /FEA=EST /CNT=6 /TID=Rn.51505.1 /TIER=Stack /STK=6 /UG=Rn.51505 /UG_TITLE=ESTs BE120144 1390096_at BF284481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284481 /DB_XREF=gi:11215551 /DB_XREF=EST449072 /CLONE=RGIEQ82 /FEA=EST /CNT=22 /TID=Rn.1097.1 /TIER=ConsEnd /STK=5 /UG=Rn.1097 /UG_TITLE=ESTs BF284481 1390097_at BI281738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281738 /DB_XREF=gi:14931792 /DB_XREF=UI-R-CT0s-cav-h-08-0-UI.s1 /CLONE=UI-R-CT0s-cav-h-08-0-UI /FEA=EST /CNT=14 /TID=Rn.22402.1 /TIER=ConsEnd /STK=5 /UG=Rn.22402 /UG_TITLE=ESTs, Moderately similar to Y193_HUMAN HYPOTHETICAL PROTEIN KIAA0193 (H.sapiens) BI281738 TSPY-like 4 Tspyl4 309828 NM_001012075 0006334 // nucleosome assembly // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1390098_at AA955687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955687 /DB_XREF=gi:4238082 /DB_XREF=UI-R-E1-fc-a-03-0-UI.s1 /CLONE=UI-R-E1-fc-a-03-0-UI /FEA=EST /CNT=15 /TID=Rn.7240.1 /TIER=ConsEnd /STK=5 /UG=Rn.7240 /UG_TITLE=ESTs, Weakly similar to M142.5.p (Caenorhabditis elegans) (C.elegans) AA955687 N-6 adenine-specific DNA methyltransferase 2 (putative) N6amt2 290279 NM_001134990 0032259 // methylation // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation 1390099_at BE098487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098487 /DB_XREF=gi:8490351 /DB_XREF=UI-R-BJ1-atc-e-08-0-UI.s1 /CLONE=UI-R-BJ1-atc-e-08-0-UI /FEA=EST /CNT=12 /TID=Rn.22108.1 /TIER=ConsEnd /STK=5 /UG=Rn.22108 /UG_TITLE=ESTs BE098487 ubiquitin protein ligase E3A Ube3a 361585 NM_001191837 /// XM_001055915 /// XM_341867 0001541 // ovarian follicle development // not recorded /// 0006464 // protein modification process // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0030521 // androgen receptor signaling pathway // not recorded /// 0035037 // sperm entry // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060736 // prostate gland growth // not recorded /// 0070936 // protein K48-linked ubiquitination // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded 0003713 // transcription coactivator activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1390100_s_at BG371810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371810 /DB_XREF=gi:13268347 /DB_XREF=UI-R-CV0-bri-e-11-0-UI.s1 /CLONE=UI-R-CV0-bri-e-11-0-UI /FEA=EST /CNT=12 /TID=Rn.39184.1 /TIER=ConsEnd /STK=5 /UG=Rn.39184 /UG_TITLE=ESTs BG371810 1390101_at AI170609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170609 /DB_XREF=gi:3710649 /DB_XREF=EST216543 /CLONE=RMUAY79 /FEA=EST /CNT=15 /TID=Rn.36792.1 /TIER=ConsEnd /STK=5 /UG=Rn.36792 /UG_TITLE=ESTs AI170609 1390102_at AI168996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI168996 /DB_XREF=gi:4134355 /DB_XREF=EST214824 /CLONE=RKIBL64 /FEA=EST /CNT=13 /TID=Rn.11476.1 /TIER=ConsEnd /STK=5 /UG=Rn.11476 /UG_TITLE=ESTs AI168996 disrupted in renal carcinoma 2 (human) Dirc2 303902 NM_001012017 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1390103_at BE095970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095970 /DB_XREF=gi:8486901 /DB_XREF=UI-R-BU0-apd-g-09-0-UI.s1 /CLONE=UI-R-BU0-apd-g-09-0-UI /FEA=EST /CNT=12 /TID=Rn.12630.1 /TIER=ConsEnd /STK=5 /UG=Rn.12630 /UG_TITLE=ESTs, Weakly similar to T14355 protein-tyrosine-phosphatase (R.norvegicus) BE095970 PHD finger protein 2 Phf2 306814 NM_001107342 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 1390104_at BI296551 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296551 /DB_XREF=gi:14961086 /DB_XREF=UI-R-CV2-cgs-e-07-0-UI.s1 /CLONE=UI-R-CV2-cgs-e-07-0-UI /FEA=EST /CNT=11 /TID=Rn.32553.1 /TIER=ConsEnd /STK=5 /UG=Rn.32553 /UG_TITLE=ESTs BI296551 immunity-related GTPase family, Q Irgq 292708 NM_001135742 0005515 // protein binding // not recorded 1390105_at BG381632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381632 /DB_XREF=gi:13306104 /DB_XREF=UI-R-CT0-bud-f-01-0-UI.s1 /CLONE=UI-R-CT0-bud-f-01-0-UI /FEA=EST /CNT=20 /TID=Rn.9045.1 /TIER=ConsEnd /STK=5 /UG=Rn.9045 /UG_TITLE=ESTs, Weakly similar to glycoprotein galactosyltransferase beta 1, 4; beta-1,4-GalT; galactosyltransferase 2 beta 1, 4; B-1,4-GalT1; beta-1,4-GalT1 (Mus musculus) (M.musculus) BG381632 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 B4galt2 313536 NM_001107965 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1390106_at AI574843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI574843 /DB_XREF=gi:4544839 /DB_XREF=UI-R-G0-ud-f-07-0-UI.s1 /CLONE=UI-R-G0-ud-f-07-0-UI /FEA=EST /CNT=14 /TID=Rn.22120.1 /TIER=ConsEnd /STK=5 /UG=Rn.22120 /UG_TITLE=ESTs AI574843 hypothetical protein LOC100360019 LOC100360019 100360019 XM_002727223 /// XM_002730025 1390107_at BG670294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670294 /DB_XREF=gi:13892393 /DB_XREF=DRNACH06 /CLONE=DRNACH06 /FEA=EST /CNT=13 /TID=Rn.7634.1 /TIER=ConsEnd /STK=5 /UG=Rn.7634 /UG_TITLE=ESTs BG670294 synaptotagmin-like 2 Sytl2 361604 NM_001108492 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006887 // exocytosis // not recorded /// 0006887 // exocytosis // inferred from electronic annotation /// 0006904 // vesicle docking involved in exocytosis // not recorded /// 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0070257 // positive regulation of mucus secretion // not recorded /// 0070257 // positive regulation of mucus secretion // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0019897 // extrinsic to plasma membrane // not recorded /// 0019897 // extrinsic to plasma membrane // inferred from electronic annotation /// 0042470 // melanosome // not recorded /// 0042470 // melanosome // inferred from electronic annotation /// 0070382 // exocytic vesicle // not recorded /// 0070382 // exocytic vesicle // inferred from electronic annotation 0001786 // phosphatidylserine binding // not recorded /// 0001786 // phosphatidylserine binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // not recorded /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from electronic annotation /// 0042043 // neurexin binding // not recorded /// 0042043 // neurexin binding // inferred from electronic annotation 1390108_at AI233162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233162 /DB_XREF=gi:3817042 /DB_XREF=EST229850 /CLONE=RKICL63 /FEA=EST /CNT=12 /TID=Rn.19930.1 /TIER=ConsEnd /STK=5 /UG=Rn.19930 /UG_TITLE=ESTs AI233162 similar to RIKEN cDNA 2310079N02 RGD1306192 361443 NM_001134573 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1390109_at BI303073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303073 /DB_XREF=gi:14979353 /DB_XREF=UI-R-DQ0-ciz-a-05-0-UI.s1 /CLONE=UI-R-DQ0-ciz-a-05-0-UI /FEA=EST /CNT=11 /TID=Rn.25065.1 /TIER=ConsEnd /STK=5 /UG=Rn.25065 /UG_TITLE=ESTs BI303073 1390110_at BG372998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372998 /DB_XREF=gi:13269535 /DB_XREF=UI-R-CV1-bsb-d-02-0-UI.s1 /CLONE=UI-R-CV1-bsb-d-02-0-UI /FEA=EST /CNT=10 /TID=Rn.17717.1 /TIER=ConsEnd /STK=5 /UG=Rn.17717 /UG_TITLE=ESTs, Weakly similar to F19B6.1b.p (Caenorhabditis elegans) (C.elegans) BG372998 uridine-cytidine kinase 1-like 1 /// zinc finger protein 512B Uckl1 /// Znf512b 311721 /// 499956 NM_001107809 /// NM_001109212 0008152 // metabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004849 // uridine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1390111_at BI285224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285224 /DB_XREF=gi:14938646 /DB_XREF=UI-R-DB0-byx-e-11-0-UI.s1 /CLONE=UI-R-DB0-byx-e-11-0-UI /FEA=EST /CNT=10 /TID=Rn.8212.1 /TIER=ConsEnd /STK=5 /UG=Rn.8212 /UG_TITLE=ESTs BI285224 family with sequence similarity 91, member A1 Fam91a1 689997 NM_001127578 1390112_at BF284634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284634 /DB_XREF=gi:11215704 /DB_XREF=EST449225 /CLONE=RGIEU19 /FEA=EST /CNT=10 /TID=Rn.8037.1 /TIER=ConsEnd /STK=5 /UG=Rn.8037 /UG_TITLE=ESTs, Highly similar to JC5621 epidermal growth factor-like protein, T16 precursor - rat (R.norvegicus) BF284634 EGF-containing fibulin-like extracellular matrix protein 1 Efemp1 305604 NM_001012039 0007173 // epidermal growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from sequence or structural similarity /// 0032331 // negative regulation of chondrocyte differentiation // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // non-traceable author statement /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0031012 // extracellular matrix // not recorded 0005006 // epidermal growth factor receptor activity // inferred from sequence or structural similarity /// 0005154 // epidermal growth factor receptor binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // non-traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded 1390113_a_at BI300539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300539 /DB_XREF=gi:14976819 /DB_XREF=UI-R-CV2-cim-b-10-0-UI.s1 /CLONE=UI-R-CV2-cim-b-10-0-UI /FEA=EST /CNT=10 /TID=Rn.24954.1 /TIER=ConsEnd /STK=5 /UG=Rn.24954 /UG_TITLE=ESTs, Highly similar to T42646 hypothetical protein DKFZp727K171.1 (H.sapiens) BI300539 La ribonucleoprotein domain family, member 1 Larp1 303158 XM_001075150 /// XM_220446 0005515 // protein binding // not recorded 1390114_at BM384017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384017 /DB_XREF=gi:18184070 /DB_XREF=UI-R-DM1-ckb-g-06-0-UI.s1 /CLONE=UI-R-DM1-ckb-g-06-0-UI /FEA=EST /CNT=11 /TID=Rn.8087.1 /TIER=ConsEnd /STK=5 /UG=Rn.8087 /UG_TITLE=ESTs BM384017 myelin protein zero-like 1 Mpzl1 360871 NM_001007728 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390115_at BM384667 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384667 /DB_XREF=gi:18184720 /DB_XREF=UI-R-DY0-ckl-l-03-0-UI.s1 /CLONE=UI-R-DY0-ckl-l-03-0-UI /FEA=EST /CNT=11 /TID=Rn.24233.1 /TIER=ConsEnd /STK=5 /UG=Rn.24233 /UG_TITLE=ESTs BM384667 SEC63 homolog (S. cerevisiae) Sec63 309858 NM_001107637 0006457 // protein folding // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1390116_at AA899937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899937 /DB_XREF=gi:4232429 /DB_XREF=UI-R-E0-dh-h-12-0-UI.s1 /CLONE=UI-R-E0-dh-h-12-0-UI /FEA=EST /CNT=11 /TID=Rn.13589.1 /TIER=ConsEnd /STK=5 /UG=Rn.13589 /UG_TITLE=ESTs AA899937 1390117_at BG372455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372455 /DB_XREF=gi:13268992 /DB_XREF=UI-R-CV0-brq-b-06-0-UI.s1 /CLONE=UI-R-CV0-brq-b-06-0-UI /FEA=EST /CNT=10 /TID=Rn.16601.1 /TIER=ConsEnd /STK=5 /UG=Rn.16601 /UG_TITLE=ESTs BG372455 1390118_at BI274651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274651 /DB_XREF=gi:14885760 /DB_XREF=UI-R-CX0-bws-d-07-0-UI.s1 /CLONE=UI-R-CX0-bws-d-07-0-UI /FEA=EST /CNT=10 /TID=Rn.8388.1 /TIER=ConsEnd /STK=5 /UG=Rn.8388 /UG_TITLE=ESTs, Highly similar to CFP1_HUMAN Pre-mRNA cleavage complex II protein Clp1 (H.sapiens) BI274651 CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae) Clp1 311166 NM_001009599 0006388 // tRNA splicing, via endonucleolytic cleavage and ligation // not recorded /// 0006388 // tRNA splicing, via endonucleolytic cleavage and ligation // inferred from sequence or structural similarity /// 0006388 // tRNA splicing, via endonucleolytic cleavage and ligation // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0030423 // targeting of mRNA for destruction involved in RNA interference // not recorded /// 0030423 // targeting of mRNA for destruction involved in RNA interference // inferred from sequence or structural similarity /// 0030423 // targeting of mRNA for destruction involved in RNA interference // inferred from electronic annotation /// 0035087 // siRNA loading onto RISC involved in RNA interference // not recorded /// 0035087 // siRNA loading onto RISC involved in RNA interference // inferred from sequence or structural similarity /// 0035087 // siRNA loading onto RISC involved in RNA interference // inferred from electronic annotation 0000214 // tRNA-intron endonuclease complex // not recorded /// 0000214 // tRNA-intron endonuclease complex // inferred from sequence or structural similarity /// 0000214 // tRNA-intron endonuclease complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046404 // ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity // inferred from electronic annotation /// 0051733 // polydeoxyribonucleotide kinase activity // not recorded /// 0051733 // polydeoxyribonucleotide kinase activity // inferred from sequence or structural similarity /// 0051733 // polydeoxyribonucleotide kinase activity // inferred from electronic annotation /// 0051736 // ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity // not recorded /// 0051736 // ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity // inferred from sequence or structural similarity /// 0051736 // ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity // inferred from electronic annotation 1390119_at BF396602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396602 /DB_XREF=gi:11381577 /DB_XREF=UI-R-BS2-bea-a-08-0-UI.s1 /CLONE=UI-R-BS2-bea-a-08-0-UI /FEA=EST /CNT=10 /TID=Rn.7711.1 /TIER=ConsEnd /STK=5 /UG=Rn.7711 /UG_TITLE=ESTs BF396602 secreted frizzled-related protein 2 Sfrp2 310552 NM_001100700 0001756 // somitogenesis // not recorded /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0002063 // chondrocyte development // not recorded /// 0002063 // chondrocyte development // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from expression pattern /// 0008219 // cell death // not recorded /// 0008219 // cell death // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0021915 // neural tube development // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0031668 // cellular response to extracellular stimulus // not recorded /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0035121 // tail morphogenesis // not recorded /// 0035121 // tail morphogenesis // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042662 // negative regulation of mesodermal cell fate specification // not recorded /// 0042662 // negative regulation of mesodermal cell fate specification // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // not recorded /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043508 // negative regulation of JUN kinase activity // not recorded /// 0043508 // negative regulation of JUN kinase activity // inferred from electronic annotation /// 0046546 // development of primary male sexual characteristics // not recorded /// 0048546 // digestive tract morphogenesis // not recorded /// 0051216 // cartilage development // not recorded /// 0051216 // cartilage development // inferred from electronic annotation /// 0060028 // convergent extension involved in axis elongation // not recorded /// 0060349 // bone morphogenesis // not recorded /// 0060349 // bone morphogenesis // inferred from electronic annotation /// 0061054 // dermatome development // not recorded /// 0061056 // sclerotome development // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0090175 // regulation of establishment of planar polarity // not recorded /// 0090175 // regulation of establishment of planar polarity // inferred from electronic annotation 0005615 // extracellular space // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017147 // Wnt-protein binding // not recorded /// 0017147 // Wnt-protein binding // inferred from electronic annotation 1390120_a_at BI300772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300772 /DB_XREF=gi:14977052 /DB_XREF=UI-R-CV2-cij-d-09-0-UI.s1 /CLONE=UI-R-CV2-cij-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.7243.2 /TIER=ConsEnd /STK=3 /UG=Rn.7243 /UG_TITLE=ESTs, Highly similar to ring finger protein 1 (Homo sapiens) (H.sapiens) BI300772 ring finger protein 1 Ring1 309626 NM_212549 0006350 // transcription // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016574 // histone ubiquitination // inferred from electronic annotation /// 0016574 // histone ubiquitination // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // not recorded 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0000151 // ubiquitin ligase complex // not recorded /// 0001739 // sex chromatin // inferred from electronic annotation /// 0001739 // sex chromatin // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016604 // nuclear body // not recorded /// 0016604 // nuclear body // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation /// 0031519 // PcG protein complex // inferred from electronic annotation /// 0031519 // PcG protein complex // not recorded 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390121_at BM391112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391112 /DB_XREF=gi:18191165 /DB_XREF=UI-R-CN1-cjr-j-20-0-UI.s1 /CLONE=UI-R-CN1-cjr-j-20-0-UI /FEA=EST /CNT=9 /TID=Rn.37789.1 /TIER=ConsEnd /STK=5 /UG=Rn.37789 /UG_TITLE=ESTs BM391112 GLIS family zinc finger 2 Glis2 302946 NM_001106978 0016481 // negative regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded 1390122_at BI275740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275740 /DB_XREF=gi:14919950 /DB_XREF=UI-R-CX0-bxg-b-03-0-UI.s1 /CLONE=UI-R-CX0-bxg-b-03-0-UI /FEA=EST /CNT=9 /TID=Rn.12212.1 /TIER=ConsEnd /STK=5 /UG=Rn.12212 /UG_TITLE=ESTs BI275740 1390123_at BI279036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279036 /DB_XREF=gi:14926466 /DB_XREF=UI-R-CZ0-byi-d-04-0-UI.s1 /CLONE=UI-R-CZ0-byi-d-04-0-UI /FEA=EST /CNT=9 /TID=Rn.42073.1 /TIER=ConsEnd /STK=5 /UG=Rn.42073 /UG_TITLE=ESTs, Weakly similar to I49441 Mouse 19.5 mRNA, complete cds - mouse (M.musculus) BI279036 transmembrane protein 45b Tmem45b 315524 NM_001033067 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1390124_at AA801136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA801136 /DB_XREF=gi:4131575 /DB_XREF=EST190633 /CLONE=ROVAA77 /FEA=EST /CNT=9 /TID=Rn.24187.1 /TIER=ConsEnd /STK=5 /UG=Rn.24187 /UG_TITLE=ESTs AA801136 family with sequence similarity 98, member B Fam98b 499866 XM_001080684 /// XM_575208 0005515 // protein binding // not recorded 1390125_at BE098998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098998 /DB_XREF=gi:8490873 /DB_XREF=UI-R-BJ1-atf-b-10-0-UI.s1 /CLONE=UI-R-BJ1-atf-b-10-0-UI /FEA=EST /CNT=9 /TID=Rn.12071.1 /TIER=ConsEnd /STK=5 /UG=Rn.12071 /UG_TITLE=ESTs, Weakly similar to T32472 hypothetical protein F08F1.7 - Caenorhabditis elegans (C.elegans) BE098998 transmembrane 9 superfamily member 1 Tm9sf1 361043 NM_001012155 0006914 // autophagy // inferred from electronic annotation 0000421 // autophagic vacuole membrane // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 1390126_at BE112913 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112913 /DB_XREF=gi:8505018 /DB_XREF=UI-R-BJ1-awa-c-09-0-UI.s1 /CLONE=UI-R-BJ1-awa-c-09-0-UI /FEA=EST /CNT=9 /TID=Rn.12932.1 /TIER=ConsEnd /STK=5 /UG=Rn.12932 /UG_TITLE=ESTs BE112913 1390127_at BI296216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296216 /DB_XREF=gi:14960436 /DB_XREF=UI-R-DK0-cex-f-11-0-UI.s1 /CLONE=UI-R-DK0-cex-f-11-0-UI /FEA=EST /CNT=14 /TID=Rn.38058.1 /TIER=ConsEnd /STK=5 /UG=Rn.38058 /UG_TITLE=ESTs BI296216 DIX domain containing 1 Dixdc1 363062 NM_001037654 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0021695 // cerebellar cortex development // inferred from mutant phenotype /// 0046330 // positive regulation of JNK cascade // inferred from mutant phenotype /// 0050772 // positive regulation of axonogenesis // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from direct assay 1390128_at BF557618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557618 /DB_XREF=gi:11667348 /DB_XREF=UI-R-E1-gj-d-09-0-UI.r1 /CLONE=UI-R-E1-gj-d-09-0-UI /FEA=EST /CNT=11 /TID=Rn.39132.1 /TIER=ConsEnd /STK=5 /UG=Rn.39132 /UG_TITLE=ESTs, Weakly similar to T33826 hypothetical protein F23C8.6 - Caenorhabditis elegans (C.elegans) BF557618 chromatin modifying protein 1B Chmp1b 689364 NM_001109533 0015031 // protein transport // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0019904 // protein domain specific binding // not recorded 1390129_at AI177861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177861 /DB_XREF=gi:3728499 /DB_XREF=EST221510 /CLONE=RPLCH54 /FEA=EST /CNT=10 /TID=Rn.29152.1 /TIER=ConsEnd /STK=5 /UG=Rn.29152 /UG_TITLE=ESTs AI177861 1390130_at BM392225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392225 /DB_XREF=gi:18192278 /DB_XREF=UI-R-DO1-ckp-d-17-0-UI.s1 /CLONE=UI-R-DO1-ckp-d-17-0-UI /FEA=EST /CNT=10 /TID=Rn.20630.1 /TIER=ConsEnd /STK=5 /UG=Rn.20630 /UG_TITLE=ESTs BM392225 1390131_at BE112936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112936 /DB_XREF=gi:8505041 /DB_XREF=UI-R-BJ1-awa-e-10-0-UI.s1 /CLONE=UI-R-BJ1-awa-e-10-0-UI /FEA=EST /CNT=9 /TID=Rn.36531.1 /TIER=ConsEnd /STK=5 /UG=Rn.36531 /UG_TITLE=ESTs BE112936 serine racemase Srr 303306 NM_198757 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006563 // L-serine metabolic process // inferred from electronic annotation /// 0006563 // L-serine metabolic process // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0009069 // serine family amino acid metabolic process // not recorded /// 0009069 // serine family amino acid metabolic process // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042866 // pyruvate biosynthetic process // inferred from electronic annotation /// 0042866 // pyruvate biosynthetic process // not recorded /// 0043278 // response to morphine // inferred from expression pattern /// 0051289 // protein homotetramerization // inferred from electronic annotation /// 0051289 // protein homotetramerization // not recorded /// 0070179 // D-serine biosynthetic process // inferred from electronic annotation /// 0070179 // D-serine biosynthetic process // not recorded 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0045177 // apical part of cell // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0003941 // L-serine ammonia-lyase activity // inferred from electronic annotation /// 0003941 // L-serine ammonia-lyase activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016594 // glycine binding // inferred from electronic annotation /// 0016594 // glycine binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation /// 0018114 // threonine racemase activity // inferred from electronic annotation /// 0018114 // threonine racemase activity // not recorded /// 0030165 // PDZ domain binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // not recorded /// 0030170 // pyridoxal phosphate binding // inferred from direct assay /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // not recorded /// 0030378 // serine racemase activity // inferred from direct assay /// 0030378 // serine racemase activity // not recorded /// 0030378 // serine racemase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1390132_at BF282059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282059 /DB_XREF=gi:11213129 /DB_XREF=EST446650 /CLONE=RGIDB28 /FEA=EST /CNT=9 /TID=Rn.9318.1 /TIER=ConsEnd /STK=5 /UG=Rn.9318 /UG_TITLE=ESTs BF282059 1390133_at AI178277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178277 /DB_XREF=gi:3728915 /DB_XREF=EST221945 /CLONE=RPLCO45 /FEA=EST /CNT=9 /TID=Rn.13297.1 /TIER=ConsEnd /STK=5 /UG=Rn.13297 /UG_TITLE=ESTs AI178277 1390134_at AI411274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411274 /DB_XREF=gi:4254778 /DB_XREF=EST239568 /CLONE=RKIEO78 /FEA=EST /CNT=9 /TID=Rn.18326.1 /TIER=ConsEnd /STK=5 /UG=Rn.18326 /UG_TITLE=ESTs AI411274 1390135_at AI044718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044718 /DB_XREF=gi:3291579 /DB_XREF=UI-R-C1-ki-a-11-0-UI.s1 /CLONE=UI-R-C1-ki-a-11-0-UI /FEA=EST /CNT=8 /TID=Rn.16211.1 /TIER=ConsEnd /STK=5 /UG=Rn.16211 /UG_TITLE=ESTs, Weakly similar to A24264 proline-rich protein MP2 - mouse (M.musculus) AI044718 Similar to KIAA2026 protein RGD1311595 309307 XM_001079649 /// XM_219779 1390136_at BE109274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109274 /DB_XREF=gi:8501379 /DB_XREF=UI-R-BS1-azd-h-07-0-UI.s1 /CLONE=UI-R-BS1-azd-h-07-0-UI /FEA=EST /CNT=8 /TID=Rn.43557.1 /TIER=ConsEnd /STK=5 /UG=Rn.43557 /UG_TITLE=ESTs BE109274 1390137_at BM388478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388478 /DB_XREF=gi:18188531 /DB_XREF=UI-R-DZ0-ckm-i-13-0-UI.s1 /CLONE=UI-R-DZ0-ckm-i-13-0-UI /FEA=EST /CNT=8 /TID=Rn.20235.1 /TIER=ConsEnd /STK=5 /UG=Rn.20235 /UG_TITLE=ESTs BM388478 TRAF4 associated factor 1 Traf4af1 311325 NM_001004264 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390138_at BE107413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107413 /DB_XREF=gi:8499518 /DB_XREF=UI-R-BS1-ayt-d-09-0-UI.s1 /CLONE=UI-R-BS1-ayt-d-09-0-UI /FEA=EST /CNT=8 /TID=Rn.40359.1 /TIER=ConsEnd /STK=5 /UG=Rn.40359 /UG_TITLE=ESTs BE107413 coiled-coil domain containing 8 Ccdc8 494320 NM_001009533 0005886 // plasma membrane // not recorded 1390139_a_at BE099622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099622 /DB_XREF=gi:8491500 /DB_XREF=UI-R-BJ1-atp-d-10-0-UI.s1 /CLONE=UI-R-BJ1-atp-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.776.2 /TIER=ConsEnd /STK=4 /UG=Rn.776 /UG_TITLE=ESTs, Weakly similar to myosin-binding C-protein (R.norvegicus) BE099622 obscurin-like 1 Obsl1 363259 XM_001062053 /// XM_343599 0055003 // cardiac myofibril assembly // not recorded 1390140_at AI235493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235493 /DB_XREF=gi:3828999 /DB_XREF=EST232055 /CLONE=ROVCS54 /FEA=EST /CNT=8 /TID=Rn.22132.1 /TIER=ConsEnd /STK=5 /UG=Rn.22132 /UG_TITLE=ESTs, Moderately similar to MAN1_HUMAN INNER NUCLEAR MEMBRANE PROTEIN MAN1 (H.sapiens) AI235493 LEM domain containing 3 Lemd3 680066 NM_001191000 /// XM_001055542 /// XM_002726900 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0032926 // negative regulation of activin receptor signaling pathway // not recorded 0005635 // nuclear envelope // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005637 // nuclear inner membrane // not recorded /// 0005639 // integral to nuclear inner membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390141_at BF281848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281848 /DB_XREF=gi:11212918 /DB_XREF=EST446439 /CLONE=RGIBH15 /FEA=EST /CNT=8 /TID=Rn.18065.1 /TIER=ConsEnd /STK=5 /UG=Rn.18065 /UG_TITLE=ESTs, Weakly similar to C1TC RAT C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC (R.norvegicus) BF281848 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like Mthfd1l 361472 NM_001108462 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0006760 // folic acid and derivative metabolic process // not recorded /// 0006760 // folic acid and derivative metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009396 // folic acid and derivative biosynthetic process // inferred from electronic annotation /// 0015942 // formate metabolic process // not recorded /// 0015942 // formate metabolic process // inferred from electronic annotation /// 0046653 // tetrahydrofolate metabolic process // not recorded /// 0046653 // tetrahydrofolate metabolic process // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004329 // formate-tetrahydrofolate ligase activity // inferred from electronic annotation /// 0004329 // formate-tetrahydrofolate ligase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation 1390142_at BE111888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111888 /DB_XREF=gi:8503993 /DB_XREF=UI-R-BS1-azu-b-08-0-UI.s1 /CLONE=UI-R-BS1-azu-b-08-0-UI /FEA=EST /CNT=8 /TID=Rn.17121.1 /TIER=ConsEnd /STK=5 /UG=Rn.17121 /UG_TITLE=ESTs BE111888 MORC family CW-type zinc finger 3 Morc3 304074 NM_001107109 0006468 // protein phosphorylation // not recorded /// 0007569 // cell aging // not recorded /// 0009791 // post-embryonic development // not recorded /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0048147 // negative regulation of fibroblast proliferation // not recorded /// 0050821 // protein stabilization // not recorded /// 0051457 // maintenance of protein location in nucleus // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0016605 // PML body // not recorded 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1390143_at AW141172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141172 /DB_XREF=gi:6160952 /DB_XREF=EST291208 /CLONE=RGIBE51 /FEA=EST /CNT=8 /TID=Rn.7632.1 /TIER=ConsEnd /STK=5 /UG=Rn.7632 /UG_TITLE=ESTs AW141172 SET binding factor 1 Sbf1 300147 XM_001054780 /// XM_217021 0007283 // spermatogenesis // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0016791 // phosphatase activity // inferred from electronic annotation 1390144_at BF411622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411622 /DB_XREF=gi:11399611 /DB_XREF=UI-R-BT1-bmp-f-05-0-UI.s1 /CLONE=UI-R-BT1-bmp-f-05-0-UI /FEA=EST /CNT=8 /TID=Rn.13725.1 /TIER=ConsEnd /STK=5 /UG=Rn.13725 /UG_TITLE=ESTs BF411622 similar to RIKEN cDNA 3110043O21 RGD1359108 313155 NM_001007702 1390145_at AW524532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524532 /DB_XREF=gi:7166917 /DB_XREF=UI-R-BO0-ahz-e-08-0-UI.s1 /CLONE=UI-R-BO0-ahz-e-08-0-UI /FEA=EST /CNT=8 /TID=Rn.17861.1 /TIER=ConsEnd /STK=5 /UG=Rn.17861 /UG_TITLE=ESTs AW524532 1390146_at BF414998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414998 /DB_XREF=gi:11402987 /DB_XREF=UI-R-BJ2-boy-e-05-0-UI.s1 /CLONE=UI-R-BJ2-boy-e-05-0-UI /FEA=EST /CNT=8 /TID=Rn.20251.1 /TIER=ConsEnd /STK=5 /UG=Rn.20251 /UG_TITLE=ESTs BF414998 transmembrane protein 150C Tmem150c 360916 NM_001108354 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1390147_at AI549079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549079 /DB_XREF=gi:4466567 /DB_XREF=UI-R-C3-tq-c-10-0-UI.s1 /CLONE=UI-R-C3-tq-c-10-0-UI /FEA=EST /CNT=8 /TID=Rn.41781.1 /TIER=ConsEnd /STK=5 /UG=Rn.41781 /UG_TITLE=ESTs, Highly similar to T17232 hypothetical protein DKFZp434I116.1 (H.sapiens) AI549079 similar to mKIAA1429 protein RGD1559904 313061 NM_001107915 1390148_a_at BM388100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388100 /DB_XREF=gi:18188153 /DB_XREF=UI-R-DM1-cjz-h-07-0-UI.s1 /CLONE=UI-R-DM1-cjz-h-07-0-UI /FEA=EST /CNT=8 /TID=Rn.13352.1 /TIER=ConsEnd /STK=5 /UG=Rn.13352 /UG_TITLE=ESTs BM388100 zinc finger protein 395 Zfp395 305972 NM_001107271 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1390149_at BI286164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286164 /DB_XREF=gi:14940540 /DB_XREF=UI-R-DE0-cah-e-04-0-UI.s1 /CLONE=UI-R-DE0-cah-e-04-0-UI /FEA=EST /CNT=8 /TID=Rn.13989.1 /TIER=ConsEnd /STK=5 /UG=Rn.13989 /UG_TITLE=ESTs BI286164 transforming, acidic coiled-coil containing protein 2 Tacc2 309025 NM_001004415 /// NM_001004418 0000226 // microtubule cytoskeleton organization // not recorded /// 0008283 // cell proliferation // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0022008 // neurogenesis // not recorded /// 0022027 // interkinetic nuclear migration // not recorded /// 0030953 // spindle astral microtubule organization // not recorded /// 0032886 // regulation of microtubule-based process // not recorded 0019904 // protein domain specific binding // not recorded /// 0035257 // nuclear hormone receptor binding // not recorded 1390150_at AI599135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599135 /DB_XREF=gi:4608183 /DB_XREF=EST250838 /CLONE=REMEB26 /FEA=EST /CNT=8 /TID=Rn.22248.1 /TIER=ConsEnd /STK=5 /UG=Rn.22248 /UG_TITLE=ESTs AI599135 1390151_at BM392146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392146 /DB_XREF=gi:18192199 /DB_XREF=UI-R-DO1-ckp-c-24-0-UI.s1 /CLONE=UI-R-DO1-ckp-c-24-0-UI /FEA=EST /CNT=8 /TID=Rn.24083.1 /TIER=ConsEnd /STK=5 /UG=Rn.24083 /UG_TITLE=ESTs BM392146 hypothetical protein LOC683034 LOC683034 683034 XM_001061393 1390152_at BE095882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095882 /DB_XREF=gi:8486813 /DB_XREF=UI-R-BU0-apb-f-12-0-UI.s1 /CLONE=UI-R-BU0-apb-f-12-0-UI /FEA=EST /CNT=8 /TID=Rn.41716.1 /TIER=ConsEnd /STK=5 /UG=Rn.41716 /UG_TITLE=ESTs BE095882 transmembrane emp24 protein transport domain containing 7 Tmed7 252889 NM_001105758 0006810 // transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1390153_at BG378721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378721 /DB_XREF=gi:13303193 /DB_XREF=UI-R-CV1-bvs-a-10-0-UI.s1 /CLONE=UI-R-CV1-bvs-a-10-0-UI /FEA=EST /CNT=12 /TID=Rn.7382.1 /TIER=ConsEnd /STK=5 /UG=Rn.7382 /UG_TITLE=ESTs BG378721 1390154_at BI299824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299824 /DB_XREF=gi:14976104 /DB_XREF=UI-R-CV2-chx-f-09-0-UI.s1 /CLONE=UI-R-CV2-chx-f-09-0-UI /FEA=EST /CNT=10 /TID=Rn.24154.1 /TIER=ConsEnd /STK=5 /UG=Rn.24154 /UG_TITLE=ESTs BI299824 similar to Interferon-alpha/beta receptor beta chain precursor (IFN-alpha-REC) (Type I interferon receptor) (IFN-R) (Interferon alpha/beta receptor-2) LOC686326 686326 XM_001073550 0007596 // blood coagulation // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 1390155_at AA924793 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924793 /DB_XREF=gi:4235984 /DB_XREF=UI-R-A1-eb-h-02-0-UI.s1 /CLONE=UI-R-A1-eb-h-02-0-UI /FEA=EST /CNT=9 /TID=Rn.15395.1 /TIER=ConsEnd /STK=5 /UG=Rn.15395 /UG_TITLE=ESTs AA924793 abhydrolase domain containing 6 Abhd6 305795 NM_001007680 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0047372 // acylglycerol lipase activity // inferred from electronic annotation 1390156_a_at BF283671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283671 /DB_XREF=gi:11214741 /DB_XREF=EST448262 /CLONE=RGIEF29 /FEA=EST /CNT=9 /TID=Rn.24136.1 /TIER=ConsEnd /STK=5 /UG=Rn.24136 /UG_TITLE=ESTs BF283671 prickle homolog 2 (Drosophila) Prickle2 312563 NM_001107876 0045197 // establishment or maintenance of epithelial cell apical/basal polarity // not recorded 0005737 // cytoplasm // not recorded /// 0016327 // apicolateral plasma membrane // not recorded /// 0016328 // lateral plasma membrane // not recorded 0008270 // zinc ion binding // inferred from electronic annotation 1390157_at BI295124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295124 /DB_XREF=gi:14958256 /DB_XREF=UI-R-DK0-ceg-a-11-0-UI.s1 /CLONE=UI-R-DK0-ceg-a-11-0-UI /FEA=EST /CNT=9 /TID=Rn.19453.1 /TIER=ConsEnd /STK=5 /UG=Rn.19453 /UG_TITLE=ESTs BI295124 ubiquitin-conjugating enzyme E2H Ube2h 296956 NM_001172127 1390158_at BI290752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290752 /DB_XREF=gi:14949620 /DB_XREF=UI-R-DK0-cga-a-03-0-UI.s1 /CLONE=UI-R-DK0-cga-a-03-0-UI /FEA=EST /CNT=9 /TID=Rn.24208.1 /TIER=ConsEnd /STK=5 /UG=Rn.24208 /UG_TITLE=ESTs, Weakly similar to S65464 pregnancy-associated plasma protein A precursor (H.sapiens) BI290752 similar to Pappalysin-2 precursor (Pregnancy-associated plasma protein-A2) (PAPP-A2) (Pregnancy-associated plasma protein-E1) (PAPP-E) LOC304903 304903 XM_001073420 /// XM_002724881 0006508 // proteolysis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1390159_at AA819332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819332 /DB_XREF=gi:4228470 /DB_XREF=UI-R-A0-bc-c-06-0-UI.s1 /CLONE=UI-R-A0-bc-c-06-0-UI /FEA=EST /CNT=8 /TID=Rn.1995.1 /TIER=ConsEnd /STK=5 /UG=Rn.1995 /UG_TITLE=ESTs AA819332 RAS guanyl releasing protein 3 (calcium and DAG-regulated) Rasgrp3 313874 NM_001108009 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0043087 // regulation of GTPase activity // not recorded /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0032045 // guanyl-nucleotide exchange factor complex // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005088 // Ras guanyl-nucleotide exchange factor activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017016 // Ras GTPase binding // not recorded /// 0019900 // kinase binding // not recorded /// 0046582 // Rap GTPase activator activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1390160_at AW534222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534222 /DB_XREF=gi:7176636 /DB_XREF=UI-R-C4-alq-g-03-0-UI.s1 /CLONE=UI-R-C4-alq-g-03-0-UI /FEA=EST /CNT=7 /TID=Rn.48645.1 /TIER=ConsEnd /STK=5 /UG=Rn.48645 /UG_TITLE=ESTs AW534222 RGD1562012 RGD1562012 497962 NM_001173471 /// XM_001080895 /// XM_579762 1390161_at AA818900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818900 /DB_XREF=gi:4227572 /DB_XREF=UI-R-A0-av-d-11-0-UI.s1 /CLONE=UI-R-A0-av-d-11-0-UI /FEA=EST /CNT=7 /TID=Rn.1528.1 /TIER=ConsEnd /STK=5 /UG=Rn.1528 /UG_TITLE=ESTs AA818900 cysteine/tyrosine-rich 1 Cyyr1 304138 NM_001013980 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1390162_at AI234142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234142 /DB_XREF=gi:4135965 /DB_XREF=EST230830 /CLONE=RLUCV72 /FEA=EST /CNT=7 /TID=Rn.13495.1 /TIER=ConsEnd /STK=5 /UG=Rn.13495 /UG_TITLE=ESTs, Moderately similar to Y036_HUMAN HYPOTHETICAL PROTEIN KIAA0036 (H.sapiens) AI234142 IQ motif containing B1 Iqcb1 303915 NM_001107092 0045494 // photoreceptor cell maintenance // not recorded /// 0048496 // maintenance of organ identity // not recorded 0001750 // photoreceptor outer segment // not recorded /// 0032391 // photoreceptor connecting cilium // not recorded 0005488 // binding // inferred from electronic annotation /// 0005516 // calmodulin binding // not recorded 1390163_at BF282174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282174 /DB_XREF=gi:11213244 /DB_XREF=EST446765 /CLONE=RGIDF21 /FEA=EST /CNT=7 /TID=Rn.25205.1 /TIER=ConsEnd /STK=5 /UG=Rn.25205 /UG_TITLE=ESTs BF282174 similar to expressed sequence AI553587 RGD1563863 498418 NM_001127559 1390164_at BE099850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099850 /DB_XREF=gi:8491732 /DB_XREF=UI-R-BJ1-atq-h-09-0-UI.s1 /CLONE=UI-R-BJ1-atq-h-09-0-UI /FEA=EST /CNT=7 /TID=Rn.23225.1 /TIER=ConsEnd /STK=5 /UG=Rn.23225 /UG_TITLE=ESTs BE099850 1390165_at BI288756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288756 /DB_XREF=gi:14945644 /DB_XREF=UI-R-DK0-cde-e-10-0-UI.s1 /CLONE=UI-R-DK0-cde-e-10-0-UI /FEA=EST /CNT=7 /TID=Rn.20113.1 /TIER=ConsEnd /STK=5 /UG=Rn.20113 /UG_TITLE=ESTs, Weakly similar to T08793 hypothetical protein DKFZp586F0422.1 (H.sapiens) BI288756 Similar to RIKEN cDNA 5830404H04 RGD735112 304055 NM_199391 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 1390166_at BE107612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107612 /DB_XREF=gi:8499717 /DB_XREF=UI-R-CA0-awv-f-12-0-UI.s1 /CLONE=UI-R-CA0-awv-f-12-0-UI /FEA=EST /CNT=7 /TID=Rn.49045.1 /TIER=ConsEnd /STK=5 /UG=Rn.49045 /UG_TITLE=ESTs BE107612 1390167_at BI286834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286834 /DB_XREF=gi:14941861 /DB_XREF=UI-R-CT0s-cam-d-09-0-UI.s1 /CLONE=UI-R-CT0s-cam-d-09-0-UI /FEA=EST /CNT=7 /TID=Rn.45506.1 /TIER=ConsEnd /STK=5 /UG=Rn.45506 /UG_TITLE=ESTs BI286834 tetratricopeptide repeat domain 9B Ttc9b 361528 NM_001108478 0006457 // protein folding // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1390168_a_at BI289564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289564 /DB_XREF=gi:14947264 /DB_XREF=UI-R-DK0-cff-e-07-0-UI.s1 /CLONE=UI-R-DK0-cff-e-07-0-UI /FEA=EST /CNT=7 /TID=Rn.15794.1 /TIER=ConsEnd /STK=5 /UG=Rn.15794 /UG_TITLE=ESTs BI289564 DnaJ (Hsp40) homolog, subfamily C, member 24 Dnajc24 362184 NM_001191853 /// XM_001079802 /// XM_342483 0031072 // heat shock protein binding // inferred from electronic annotation 1390169_at AW144331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144331 /DB_XREF=gi:6164230 /DB_XREF=EST294627 /CLONE=RGICQ34 /FEA=EST /CNT=7 /TID=Rn.8754.1 /TIER=ConsEnd /STK=5 /UG=Rn.8754 /UG_TITLE=ESTs AW144331 Similar to Tubby-related protein 3 (Tubby-like protein 3) LOC688749 688749 XM_001071995 0001701 // in utero embryonic development // not recorded /// 0001843 // neural tube closure // not recorded /// 0007420 // brain development // not recorded /// 0008589 // regulation of smoothened signaling pathway // not recorded /// 0021904 // dorsal/ventral neural tube patterning // not recorded /// 0021914 // negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning // not recorded /// 0021915 // neural tube development // not recorded /// 0021953 // central nervous system neuron differentiation // not recorded /// 0031076 // embryonic camera-type eye development // not recorded /// 0042733 // embryonic digit morphogenesis // not recorded /// 0045879 // negative regulation of smoothened signaling pathway // not recorded /// 0048702 // embryonic neurocranium morphogenesis // not recorded /// 0060173 // limb development // not recorded /// 0060434 // bronchus morphogenesis // not recorded /// 0060831 // smoothened signaling pathway involved in dorsal/ventral neural tube patterning // not recorded 0005929 // cilium // not recorded /// 0035085 // cilium axoneme // not recorded 1390170_at BI287343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287343 /DB_XREF=gi:14942865 /DB_XREF=UI-R-CS0s-cbn-g-08-0-UI.s1 /CLONE=UI-R-CS0s-cbn-g-08-0-UI /FEA=EST /CNT=7 /TID=Rn.40912.1 /TIER=ConsEnd /STK=5 /UG=Rn.40912 /UG_TITLE=ESTs BI287343 1390171_at AA924717 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924717 /DB_XREF=gi:4235908 /DB_XREF=UI-R-A1-ed-e-03-0-UI.s1 /CLONE=UI-R-A1-ed-e-03-0-UI /FEA=EST /CNT=7 /TID=Rn.8355.1 /TIER=ConsEnd /STK=5 /UG=Rn.8355 /UG_TITLE=ESTs AA924717 family with sequence similarity 76, member A Fam76a 362618 NM_001108686 1390172_at AI409946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409946 /DB_XREF=gi:4253450 /DB_XREF=EST238239 /CLONE=RPLDN19 /FEA=EST /CNT=7 /TID=Rn.13539.1 /TIER=ConsEnd /STK=5 /UG=Rn.13539 /UG_TITLE=ESTs AI409946 dehydrogenase E1 and transketolase domain containing 1 Dhtkd1 361272 NM_001025720 0006096 // glycolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation 0004591 // oxoglutarate dehydrogenase (succinyl-transferring) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016624 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor // inferred from electronic annotation /// 0030976 // thiamin pyrophosphate binding // inferred from electronic annotation 1390173_at BG377886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377886 /DB_XREF=gi:13302358 /DB_XREF=UI-R-CU0-bvg-d-03-0-UI.s1 /CLONE=UI-R-CU0-bvg-d-03-0-UI /FEA=EST /CNT=7 /TID=Rn.9561.1 /TIER=ConsEnd /STK=5 /UG=Rn.9561 /UG_TITLE=ESTs BG377886 1390174_at BI289762 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289762 /DB_XREF=gi:14947674 /DB_XREF=UI-R-DK0-cfn-h-07-0-UI.s1 /CLONE=UI-R-DK0-cfn-h-07-0-UI /FEA=EST /CNT=7 /TID=Rn.18819.1 /TIER=ConsEnd /STK=5 /UG=Rn.18819 /UG_TITLE=ESTs, Weakly similar to T12482 hypothetical protein DKFZp564P0662.1 (H.sapiens) BI289762 1390175_at AI072997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072997 /DB_XREF=gi:3399191 /DB_XREF=UI-R-Y0-md-b-07-0-UI.s1 /CLONE=UI-R-Y0-md-b-07-0-UI /FEA=EST /CNT=7 /TID=Rn.22113.1 /TIER=ConsEnd /STK=5 /UG=Rn.22113 /UG_TITLE=ESTs AI072997 coiled-coil domain containing 85B Ccdc85b 309161 XM_001070153 /// XM_219510 0016481 // negative regulation of transcription // not recorded /// 0030308 // negative regulation of cell growth // not recorded /// 0045599 // negative regulation of fat cell differentiation // not recorded 0005634 // nucleus // not recorded /// 0005813 // centrosome // not recorded 0005515 // protein binding // not recorded 1390176_at AA957367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957367 /DB_XREF=gi:4277257 /DB_XREF=UI-R-E1-fy-c-08-0-UI.s1 /CLONE=UI-R-E1-fy-c-08-0-UI /FEA=EST /CNT=10 /TID=Rn.17353.1 /TIER=ConsEnd /STK=5 /UG=Rn.17353 /UG_TITLE=ESTs AA957367 family with sequence similarity 84, member B Fam84b 315019 XM_001065586 /// XM_235349 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // not recorded 1390177_at AI233857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233857 /DB_XREF=gi:3817737 /DB_XREF=EST230545 /CLONE=RLUCS05 /FEA=EST /CNT=9 /TID=Rn.6397.1 /TIER=ConsEnd /STK=5 /UG=Rn.6397 /UG_TITLE=ESTs AI233857 1390178_at BM387756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387756 /DB_XREF=gi:18187809 /DB_XREF=UI-R-CN1-cjk-a-24-0-UI.s1 /CLONE=UI-R-CN1-cjk-a-24-0-UI /FEA=EST /CNT=9 /TID=Rn.18046.1 /TIER=ConsEnd /STK=5 /UG=Rn.18046 /UG_TITLE=ESTs, Highly similar to SIGNAL RECOGNITION PARTICLE RECEPTOR BETA SUBUNIT (M.musculus) BM387756 signal recognition particle receptor, B subunit Srprb 300965 NM_001013252 0006826 // iron ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005770 // late endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0009925 // basal plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0045178 // basal part of cell // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0008199 // ferric iron binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction 1390179_at BE107540 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107540 /DB_XREF=gi:8499645 /DB_XREF=UI-R-BS1-ayu-h-07-0-UI.s1 /CLONE=UI-R-BS1-ayu-h-07-0-UI /FEA=EST /CNT=8 /TID=Rn.39109.1 /TIER=ConsEnd /STK=5 /UG=Rn.39109 /UG_TITLE=ESTs BE107540 Ankyrin repeat domain 52 Ankrd52 362811 NM_001191875 /// XM_001070685 /// XM_343139 0005515 // protein binding // not recorded 1390180_at AI575012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575012 /DB_XREF=gi:4545008 /DB_XREF=UI-R-G0-um-b-08-0-UI.s1 /CLONE=UI-R-G0-um-b-08-0-UI /FEA=EST /CNT=8 /TID=Rn.38893.1 /TIER=ConsEnd /STK=5 /UG=Rn.38893 /UG_TITLE=ESTs AI575012 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1390181_at BE115041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115041 /DB_XREF=gi:8507146 /DB_XREF=UI-R-BJ1-awu-e-09-0-UI.s1 /CLONE=UI-R-BJ1-awu-e-09-0-UI /FEA=EST /CNT=7 /TID=Rn.38180.1 /TIER=ConsEnd /STK=5 /UG=Rn.38180 /UG_TITLE=ESTs BE115041 1390182_at BF394624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394624 /DB_XREF=gi:11379545 /DB_XREF=UI-R-CA0-bfx-h-10-0-UI.s1 /CLONE=UI-R-CA0-bfx-h-10-0-UI /FEA=EST /CNT=7 /TID=Rn.6580.1 /TIER=ConsEnd /STK=5 /UG=Rn.6580 /UG_TITLE=ESTs BF394624 1390183_at AI177708 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177708 /DB_XREF=gi:3728346 /DB_XREF=EST221350 /CLONE=RPLCE85 /FEA=EST /CNT=7 /TID=Rn.15747.1 /TIER=ConsEnd /STK=5 /UG=Rn.15747 /UG_TITLE=ESTs, Moderately similar to T08741 hypothetical protein DKFZp586G0518.1 (H.sapiens) AI177708 similar to ubiquitin specific protease 34 LOC360990 360990 XM_002725026 /// XM_002728139 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1390184_at BM392021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392021 /DB_XREF=gi:18192074 /DB_XREF=UI-R-DO1-cmk-k-16-0-UI.s1 /CLONE=UI-R-DO1-cmk-k-16-0-UI /FEA=EST /CNT=7 /TID=Rn.22838.1 /TIER=ConsEnd /STK=5 /UG=Rn.22838 /UG_TITLE=ESTs BM392021 1390185_at BE109709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109709 /DB_XREF=gi:8501814 /DB_XREF=UI-R-BJ1-aup-c-04-0-UI.s1 /CLONE=UI-R-BJ1-aup-c-04-0-UI /FEA=EST /CNT=7 /TID=Rn.21813.1 /TIER=ConsEnd /STK=5 /UG=Rn.21813 /UG_TITLE=ESTs, Weakly similar to S67061 hypothetical protein YOR173w - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BE109709 decapping enzyme, scavenger Dcps 266605 NM_153302 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from electronic annotation /// 0000290 // deadenylation-dependent decapping of nuclear-transcribed mRNA // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1390186_at BG380714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380714 /DB_XREF=gi:13305186 /DB_XREF=UI-R-CT0-bua-e-11-0-UI.s1 /CLONE=UI-R-CT0-bua-e-11-0-UI /FEA=EST /CNT=7 /TID=Rn.27690.1 /TIER=ConsEnd /STK=5 /UG=Rn.27690 /UG_TITLE=ESTs, Weakly similar to IMB3_HUMAN IMPORTIN BETA-3 SUBUNIT (H.sapiens) BG380714 neurensin 2 Nrsn2 689978 NM_001109561 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from electronic annotation /// 0030133 // transport vesicle // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded 1390187_at AI060043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060043 /DB_XREF=gi:3333820 /DB_XREF=UI-R-C1-kz-c-08-0-UI.s1 /CLONE=UI-R-C1-kz-c-08-0-UI /FEA=EST /CNT=7 /TID=Rn.19122.1 /TIER=ConsEnd /STK=5 /UG=Rn.19122 /UG_TITLE=ESTs AI060043 1390188_at BF419327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419327 /DB_XREF=gi:11407316 /DB_XREF=UI-R-BJ2-bqq-c-09-0-UI.s1 /CLONE=UI-R-BJ2-bqq-c-09-0-UI /FEA=EST /CNT=7 /TID=Rn.6519.1 /TIER=ConsEnd /STK=5 /UG=Rn.6519 /UG_TITLE=ESTs, Weakly similar to T12G3.5.p (Caenorhabditis elegans) (C.elegans) BF419327 mitochondrial ribosomal protein L51 Mrpl51 297601 NM_001106621 0006412 // translation // not recorded 0005739 // mitochondrion // not recorded /// 0005761 // mitochondrial ribosome // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // not recorded 1390189_at BF398121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398121 /DB_XREF=gi:11383107 /DB_XREF=UI-R-BS2-bem-f-05-0-UI.s1 /CLONE=UI-R-BS2-bem-f-05-0-UI /FEA=EST /CNT=7 /TID=Rn.11949.1 /TIER=ConsEnd /STK=5 /UG=Rn.11949 /UG_TITLE=ESTs, Moderately similar to zinc finger protein 277 (Homo sapiens) (H.sapiens) BF398121 zinc finger protein 277 Zfp277 298977 XM_001077681 /// XM_216701 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1390190_at BI293691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293691 /DB_XREF=gi:14955429 /DB_XREF=UI-R-DK0-cdu-e-11-0-UI.s1 /CLONE=UI-R-DK0-cdu-e-11-0-UI /FEA=EST /CNT=7 /TID=Rn.24205.1 /TIER=ConsEnd /STK=5 /UG=Rn.24205 /UG_TITLE=ESTs BI293691 placenta-specific 1 Plac1 317316 NM_001024894 0001890 // placenta development // not recorded /// 0001890 // placenta development // inferred from sequence or structural similarity /// 0001890 // placenta development // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 1390191_at AI234119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234119 /DB_XREF=gi:3817999 /DB_XREF=EST230807 /CLONE=RLUCV43 /FEA=EST /CNT=6 /TID=Rn.24157.1 /TIER=ConsEnd /STK=5 /UG=Rn.24157 /UG_TITLE=ESTs AI234119 1390192_at BF406261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406261 /DB_XREF=gi:11394236 /DB_XREF=UI-R-CA1-bjf-m-24-0-UI.s1 /CLONE=UI-R-CA1-bjf-m-24-0-UI /FEA=EST /CNT=6 /TID=Rn.6552.1 /TIER=ConsEnd /STK=5 /UG=Rn.6552 /UG_TITLE=ESTs, Weakly similar to solute carrier family 27 (fatty acid transporter), member 2 (Rattus norvegicus) (R.norvegicus) BF406261 solute carrier family 27 (fatty acid transporter), member 3 Slc27a3 295219 NM_001106439 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0015908 // fatty acid transport // not recorded 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004321 // fatty-acyl-CoA synthase activity // not recorded 1390193_at BF389884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389884 /DB_XREF=gi:11374722 /DB_XREF=UI-R-BS2-bdp-g-10-0-UI.s1 /CLONE=UI-R-BS2-bdp-g-10-0-UI /FEA=EST /CNT=6 /TID=Rn.30123.1 /TIER=ConsEnd /STK=5 /UG=Rn.30123 /UG_TITLE=ESTs BF389884 1390194_at BI296401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296401 /DB_XREF=gi:14960788 /DB_XREF=UI-R-DK0-cez-h-11-0-UI.s1 /CLONE=UI-R-DK0-cez-h-11-0-UI /FEA=EST /CNT=6 /TID=Rn.28233.1 /TIER=ConsEnd /STK=5 /UG=Rn.28233 /UG_TITLE=ESTs BI296401 1390195_at BM386736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386736 /DB_XREF=gi:18186789 /DB_XREF=UI-R-CN1-cjg-h-20-0-UI.s1 /CLONE=UI-R-CN1-cjg-h-20-0-UI /FEA=EST /CNT=6 /TID=Rn.18242.1 /TIER=ConsEnd /STK=5 /UG=Rn.18242 /UG_TITLE=ESTs BM386736 pleckstrin and Sec7 domain containing 4 Psd4 311785 NM_001134881 0032012 // regulation of ARF protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005086 // ARF guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1390196_at BG378858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378858 /DB_XREF=gi:13303330 /DB_XREF=UI-R-CV1-bvt-f-09-0-UI.s1 /CLONE=UI-R-CV1-bvt-f-09-0-UI /FEA=EST /CNT=6 /TID=Rn.19356.1 /TIER=ConsEnd /STK=5 /UG=Rn.19356 /UG_TITLE=ESTs BG378858 Synapsin I Syn1 24949 NM_001110782 /// NM_019133 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // not recorded /// 0007269 // neurotransmitter secretion // traceable author statement 0000795 // synaptonemal complex // inferred from electronic annotation /// 0000795 // synaptonemal complex // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0048786 // presynaptic active zone // inferred from electronic annotation /// 0048786 // presynaptic active zone // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1390197_at BG375660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375660 /DB_XREF=gi:13300132 /DB_XREF=UI-R-CS0-btd-h-07-0-UI.s1 /CLONE=UI-R-CS0-btd-h-07-0-UI /FEA=EST /CNT=6 /TID=Rn.54330.1 /TIER=ConsEnd /STK=5 /UG=Rn.54330 /UG_TITLE=ESTs BG375660 1390198_at AW523642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523642 /DB_XREF=gi:7166027 /DB_XREF=UI-R-BO0-aic-d-09-0-UI.s1 /CLONE=UI-R-BO0-aic-d-09-0-UI /FEA=EST /CNT=6 /TID=Rn.25027.1 /TIER=ConsEnd /STK=5 /UG=Rn.25027 /UG_TITLE=ESTs, Weakly similar to T47155 hypothetical protein DKFZp564B0982.1 (H.sapiens) AW523642 suppressor of variegation 4-20 homolog 1 (Drosophila) Suv420h1 361688 NM_001108512 0006350 // transcription // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016571 // histone methylation // inferred from electronic annotation /// 0016571 // histone methylation // not recorded /// 0018022 // peptidyl-lysine methylation // not recorded /// 0034770 // histone H4-K20 methylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0000780 // condensed nuclear chromosome, centromeric region // inferred from electronic annotation /// 0000780 // condensed nuclear chromosome, centromeric region // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0042799 // histone methyltransferase activity (H4-K20 specific) // inferred from electronic annotation /// 0042799 // histone methyltransferase activity (H4-K20 specific) // not recorded 1390199_at BM389647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389647 /DB_XREF=gi:18189700 /DB_XREF=UI-R-CN1-cjo-k-07-0-UI.s1 /CLONE=UI-R-CN1-cjo-k-07-0-UI /FEA=EST /CNT=6 /TID=Rn.19661.1 /TIER=ConsEnd /STK=5 /UG=Rn.19661 /UG_TITLE=ESTs BM389647 1390200_at BM388794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388794 /DB_XREF=gi:18188847 /DB_XREF=UI-R-DZ0-ckn-k-13-0-UI.s1 /CLONE=UI-R-DZ0-ckn-k-13-0-UI /FEA=EST /CNT=6 /TID=Rn.13904.1 /TIER=ConsEnd /STK=5 /UG=Rn.13904 /UG_TITLE=ESTs BM388794 FK506 binding protein 15 Fkbp15 362528 XM_001057312 /// XM_342846 0006457 // protein folding // inferred from electronic annotation 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005884 // actin filament // not recorded /// 0030424 // axon // not recorded /// 0030426 // growth cone // not recorded 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation 1390201_at AA943817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943817 /DB_XREF=gi:3103733 /DB_XREF=EST199316 /CLONE=RBRAQ11 /FEA=EST /CNT=6 /TID=Rn.7649.1 /TIER=ConsEnd /STK=5 /UG=Rn.7649 /UG_TITLE=ESTs AA943817 RAP1A, member of RAS oncogene family Rap1a 295347 NM_001005765 0006184 // GTP catabolic process // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0032045 // guanyl-nucleotide exchange factor complex // inferred from electronic annotation /// 0032045 // guanyl-nucleotide exchange factor complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0017016 // Ras GTPase binding // inferred from electronic annotation /// 0017016 // Ras GTPase binding // not recorded 1390202_at BI289584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289584 /DB_XREF=gi:14947304 /DB_XREF=UI-R-DK0-cff-g-04-0-UI.s1 /CLONE=UI-R-DK0-cff-g-04-0-UI /FEA=EST /CNT=6 /TID=Rn.64070.1 /TIER=ConsEnd /STK=5 /UG=Rn.64070 /UG_TITLE=ESTs BI289584 1390203_at AI411149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411149 /DB_XREF=gi:4254653 /DB_XREF=EST239443 /CLONE=RKIET80 /FEA=EST /CNT=6 /TID=Rn.16431.1 /TIER=ConsEnd /STK=5 /UG=Rn.16431 /UG_TITLE=ESTs AI411149 1390204_at AI227856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227856 /DB_XREF=gi:3811743 /DB_XREF=EST224551 /CLONE=RBRCM59 /FEA=EST /CNT=6 /TID=Rn.8262.1 /TIER=ConsEnd /STK=5 /UG=Rn.8262 /UG_TITLE=ESTs AI227856 1390205_at BE108876 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108876 /DB_XREF=gi:8500981 /DB_XREF=UI-R-BS1-ayz-d-08-0-UI.s1 /CLONE=UI-R-BS1-ayz-d-08-0-UI /FEA=EST /CNT=6 /TID=Rn.18583.1 /TIER=ConsEnd /STK=5 /UG=Rn.18583 /UG_TITLE=ESTs BE108876 1390206_at AW434946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434946 /DB_XREF=gi:6966253 /DB_XREF=UI-R-BJ0p-afg-h-01-0-UI.s1 /CLONE=UI-R-BJ0p-afg-h-01-0-UI /FEA=EST /CNT=6 /TID=Rn.54341.1 /TIER=ConsEnd /STK=5 /UG=Rn.54341 /UG_TITLE=ESTs AW434946 1390207_at BM390283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390283 /DB_XREF=gi:18190341 /DB_XREF=UI-R-CN1-cjq-c-18-0-UI.s1 /CLONE=UI-R-CN1-cjq-c-18-0-UI /FEA=EST /CNT=6 /TID=Rn.48618.1 /TIER=ConsEnd /STK=5 /UG=Rn.48618 /UG_TITLE=ESTs BM390283 large tumor suppressor 2 Lats2 305922 NM_001107267 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007243 // intracellular protein kinase cascade // not recorded /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0035329 // hippo signaling cascade // not recorded /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded 0000922 // spindle pole // not recorded /// 0005634 // nucleus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1390208_at BG378579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378579 /DB_XREF=gi:13303051 /DB_XREF=UI-R-CV1-bvr-b-07-0-UI.s1 /CLONE=UI-R-CV1-bvr-b-07-0-UI /FEA=EST /CNT=6 /TID=Rn.19124.1 /TIER=ConsEnd /STK=5 /UG=Rn.19124 /UG_TITLE=ESTs BG378579 HIV-1 tat interactive protein 2, homolog (human) Htatip2 292935 NM_001106263 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0045765 // regulation of angiogenesis // not recorded /// 0045765 // regulation of angiogenesis // inferred from electronic annotation /// 0051170 // nuclear import // not recorded /// 0051170 // nuclear import // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016620 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation 1390209_at BE097982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097982 /DB_XREF=gi:8488876 /DB_XREF=UI-R-C4-amc-a-04-0-UI.s1 /CLONE=UI-R-C4-amc-a-04-0-UI /FEA=EST /CNT=6 /TID=Rn.6497.1 /TIER=ConsEnd /STK=5 /UG=Rn.6497 /UG_TITLE=ESTs BE097982 synaptogyrin 3 Syngr3 302975 NM_001106985 0032411 // positive regulation of transporter activity // not recorded 0008021 // synaptic vesicle // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031594 // neuromuscular junction // not recorded /// 0045202 // synapse // not recorded 0005515 // protein binding // not recorded /// 0042169 // SH2 domain binding // not recorded /// 0047485 // protein N-terminus binding // not recorded 1390210_at BF418932 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418932 /DB_XREF=gi:11406921 /DB_XREF=UI-R-BJ2-bqk-f-01-0-UI.s1 /CLONE=UI-R-BJ2-bqk-f-01-0-UI /FEA=EST /CNT=6 /TID=Rn.16416.1 /TIER=ConsEnd /STK=5 /UG=Rn.16416 /UG_TITLE=ESTs BF418932 Phosphorylase kinase, alpha 1 Phka1 64561 NM_022626 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005976 // polysaccharide metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0006656 // phosphatidylcholine biosynthetic process // traceable author statement /// 0046777 // protein autophosphorylation // inferred from direct assay 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005964 // phosphorylase kinase complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004105 // choline-phosphate cytidylyltransferase activity // traceable author statement /// 0004339 // glucan 1,4-alpha-glucosidase activity // inferred from electronic annotation /// 0004689 // phosphorylase kinase activity // inferred from direct assay /// 0005516 // calmodulin binding // inferred from electronic annotation 1390211_at AA943570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943570 /DB_XREF=gi:3103486 /DB_XREF=EST199069 /CLONE=RBRAL62 /FEA=EST /CNT=6 /TID=Rn.22977.1 /TIER=ConsEnd /STK=5 /UG=Rn.22977 /UG_TITLE=ESTs, Weakly similar to FATP RAT LONG-CHAIN FATTY ACID TRANSPORT PROTEIN (R.norvegicus) AA943570 Solute carrier family 27 (fatty acid transporter), member 3 Slc27a3 295219 NM_001106439 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0015908 // fatty acid transport // not recorded 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004321 // fatty-acyl-CoA synthase activity // not recorded 1390212_at BI287987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287987 /DB_XREF=gi:14944129 /DB_XREF=UI-R-CX0s-ccw-f-08-0-UI.s1 /CLONE=UI-R-CX0s-ccw-f-08-0-UI /FEA=EST /CNT=6 /TID=Rn.13647.1 /TIER=ConsEnd /STK=5 /UG=Rn.13647 /UG_TITLE=ESTs BI287987 nucleoporin like 2 Nupl2 499974 NM_001109217 0005829 // cytosol // not recorded /// 0046930 // pore complex // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0015288 // porin activity // inferred from electronic annotation 1390213_at BF388763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388763 /DB_XREF=gi:11373587 /DB_XREF=UI-R-BS2-bde-c-06-0-UI.s1 /CLONE=UI-R-BS2-bde-c-06-0-UI /FEA=EST /CNT=6 /TID=Rn.38416.1 /TIER=ConsEnd /STK=5 /UG=Rn.38416 /UG_TITLE=ESTs BF388763 1390214_a_at BI284812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284812 /DB_XREF=gi:14937827 /DB_XREF=UI-R-CX0s-ccs-e-09-0-UI.s1 /CLONE=UI-R-CX0s-ccs-e-09-0-UI /FEA=EST /CNT=6 /TID=Rn.65696.1 /TIER=ConsEnd /STK=5 /UG=Rn.65696 /UG_TITLE=ESTs, Weakly similar to MATRIN 3 (R.norvegicus) BI284812 CDKN1A interacting zinc finger protein 1 Ciz1 296639 NM_001106568 0032298 // positive regulation of DNA-dependent DNA replication initiation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390215_at AI235499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235499 /DB_XREF=gi:3829005 /DB_XREF=EST232061 /CLONE=ROVCS61 /FEA=EST /CNT=6 /TID=Rn.25184.1 /TIER=ConsEnd /STK=5 /UG=Rn.25184 /UG_TITLE=ESTs AI235499 1390216_a_at AI177512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177512 /DB_XREF=gi:3728150 /DB_XREF=EST221144 /CLONE=RPLCA92 /FEA=EST /CNT=6 /TID=Rn.11538.1 /TIER=ConsEnd /STK=5 /UG=Rn.11538 /UG_TITLE=ESTs AI177512 1390217_at BF283227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283227 /DB_XREF=gi:11214297 /DB_XREF=EST447818 /CLONE=RGIDZ10 /FEA=EST /CNT=6 /TID=Rn.15797.1 /TIER=ConsEnd /STK=5 /UG=Rn.15797 /UG_TITLE=ESTs BF283227 GTPase activating Rap/RanGAP domain-like 1 Garnl1 56785 NM_020083 /// XM_001079197 /// XM_578542 0032859 // activation of Ral GTPase activity // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // not recorded /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017123 // Ral GTPase activator activity // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // not recorded 1390218_at BI295950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295950 /DB_XREF=gi:14959908 /DB_XREF=UI-R-DK0-cfc-f-07-0-UI.s1 /CLONE=UI-R-DK0-cfc-f-07-0-UI /FEA=EST /CNT=6 /TID=Rn.13608.1 /TIER=ConsEnd /STK=5 /UG=Rn.13608 /UG_TITLE=ESTs BI295950 MYST/Esa1-associated factor 6 Meaf6 362594 NM_001113784 /// XM_001057055 /// XM_002729529 /// XM_342912 0043968 // histone H2A acetylation // not recorded /// 0043981 // histone H4-K5 acetylation // not recorded /// 0043982 // histone H4-K8 acetylation // not recorded /// 0043983 // histone H4-K12 acetylation // not recorded /// 0043984 // histone H4-K16 acetylation // not recorded /// 0044154 // histone H3-K14 acetylation // not recorded 0005730 // nucleolus // not recorded /// 0035267 // NuA4 histone acetyltransferase complex // not recorded /// 0070776 // MOZ/MORF histone acetyltransferase complex // not recorded 0005515 // protein binding // not recorded 1390219_at AI412437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412437 /DB_XREF=gi:4255941 /DB_XREF=EST240736 /CLONE=RBRDO29 /FEA=EST /CNT=6 /TID=Rn.18220.1 /TIER=ConsEnd /STK=5 /UG=Rn.18220 /UG_TITLE=ESTs AI412437 WD repeat domain 19 Wdr19 305349 NM_001191679 /// XM_001078220 /// XM_223412 0005488 // binding // inferred from electronic annotation 1390220_at AW144082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144082 /DB_XREF=gi:6163981 /DB_XREF=EST294378 /CLONE=RGICG96 /FEA=EST /CNT=6 /TID=Rn.23664.1 /TIER=ConsEnd /STK=5 /UG=Rn.23664 /UG_TITLE=ESTs AW144082 1390221_at BM385216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385216 /DB_XREF=gi:18185269 /DB_XREF=UI-R-CN1-cjs-n-04-0-UI.s2 /CLONE=UI-R-CN1-cjs-n-04-0-UI /FEA=EST /CNT=6 /TID=Rn.8012.1 /TIER=ConsEnd /STK=5 /UG=Rn.8012 /UG_TITLE=ESTs BM385216 PR domain containing 1, with ZNF domain Prdm1 309871 NM_001107639 0001701 // in utero embryonic development // not recorded /// 0001892 // embryonic placenta development // not recorded /// 0001893 // maternal placenta development // not recorded /// 0010628 // positive regulation of gene expression // not recorded /// 0045165 // cell fate commitment // not recorded 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1390222_at BM388283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388283 /DB_XREF=gi:18188336 /DB_XREF=UI-R-DM1-cjz-o-24-0-UI.s1 /CLONE=UI-R-DM1-cjz-o-24-0-UI /FEA=EST /CNT=6 /TID=Rn.48247.1 /TIER=ConsEnd /STK=5 /UG=Rn.48247 /UG_TITLE=ESTs BM388283 similar to RIKEN cDNA 2310079F23 RGD1308380 305443 NM_001130061 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1390223_at AI137683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137683 /DB_XREF=gi:3638460 /DB_XREF=UI-R-C0-hs-c-04-0-UI.s1 /CLONE=UI-R-C0-hs-c-04-0-UI /FEA=EST /CNT=6 /TID=Rn.23780.1 /TIER=ConsEnd /STK=5 /UG=Rn.23780 /UG_TITLE=ESTs AI137683 1390224_at BM387978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387978 /DB_XREF=gi:18188031 /DB_XREF=UI-R-CN1-cjk-n-22-0-UI.s1 /CLONE=UI-R-CN1-cjk-n-22-0-UI /FEA=EST /CNT=6 /TID=Rn.43555.1 /TIER=ConsEnd /STK=5 /UG=Rn.43555 /UG_TITLE=ESTs BM387978 1390225_at BI298813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298813 /DB_XREF=gi:14975093 /DB_XREF=UI-R-CV2-chn-h-12-0-UI.s1 /CLONE=UI-R-CV2-chn-h-12-0-UI /FEA=EST /CNT=6 /TID=Rn.79899.1 /TIER=ConsEnd /STK=5 /UG=Rn.79899 /UG_TITLE=ESTs BI298813 NIMA (never in mitosis gene a)- related kinase 9 Nek9 299204 NM_001106747 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1390226_at AI408343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408343 /DB_XREF=gi:4251847 /DB_XREF=EST236633 /CLONE=ROVES23 /FEA=EST /CNT=6 /TID=Rn.41472.1 /TIER=ConsEnd /STK=5 /UG=Rn.41472 /UG_TITLE=ESTs AI408343 similar to hypothetical protein LOC340061 RGD1562552 498840 NM_001109122 1390227_at AI101017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101017 /DB_XREF=gi:3706015 /DB_XREF=EST210306 /CLONE=RBRBE25 /FEA=EST /CNT=6 /TID=Rn.43361.1 /TIER=ConsEnd /STK=5 /UG=Rn.43361 /UG_TITLE=ESTs AI101017 Purkinje cell protein 4-like 1 Pcp4l1 685448 NM_001126093 1390228_at BM384446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384446 /DB_XREF=gi:18184499 /DB_XREF=UI-R-CN1-cjn-m-12-0-UI.s1 /CLONE=UI-R-CN1-cjn-m-12-0-UI /FEA=EST /CNT=6 /TID=Rn.31695.1 /TIER=ConsEnd /STK=5 /UG=Rn.31695 /UG_TITLE=ESTs BM384446 amine oxidase (flavin containing) domain 1 Aof1 306819 NM_001107343 0006349 // regulation of gene expression by genetic imprinting // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0034720 // histone H3-K4 demethylation // not recorded /// 0043046 // DNA methylation involved in gamete generation // not recorded /// 0044030 // regulation of DNA methylation // not recorded 0005634 // nucleus // not recorded 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0034647 // histone demethylase activity (H3-trimethyl-K4 specific) // not recorded /// 0034648 // histone demethylase activity (H3-dimethyl-K4 specific) // not recorded /// 0034649 // histone demethylase activity (H3-monomethyl-K4 specific) // not recorded /// 0050660 // FAD or FADH2 binding // not recorded 1390229_at BF284176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284176 /DB_XREF=gi:11215246 /DB_XREF=EST448767 /CLONE=RGIEL89 /FEA=EST /CNT=6 /TID=Rn.6437.1 /TIER=ConsEnd /STK=5 /UG=Rn.6437 /UG_TITLE=ESTs BF284176 1390230_at BG374588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374588 /DB_XREF=gi:13299100 /DB_XREF=UI-R-CV1-bta-e-10-0-UI.s1 /CLONE=UI-R-CV1-bta-e-10-0-UI /FEA=EST /CNT=6 /TID=Rn.23532.1 /TIER=ConsEnd /STK=5 /UG=Rn.23532 /UG_TITLE=ESTs, Highly similar to LENS FIBER MAJOR INTRINSIC PROTEIN (R.norvegicus) BG374588 major intrinsic protein of lens fiber Mip 25480 NM_001105719 0002088 // lens development in camera-type eye // inferred from electronic annotation /// 0002088 // lens development in camera-type eye // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006833 // water transport // inferred from direct assay /// 0006833 // water transport // not recorded /// 0006833 // water transport // inferred from electronic annotation /// 0007601 // visual perception // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0015722 // canalicular bile acid transport // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055085 // transmembrane transport // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005921 // gap junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0046691 // intracellular canaliculus // inferred from direct assay 0005212 // structural constituent of eye lens // inferred from electronic annotation /// 0005212 // structural constituent of eye lens // not recorded /// 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015250 // water channel activity // inferred from direct assay /// 0015250 // water channel activity // not recorded /// 0015250 // water channel activity // inferred from electronic annotation 1390231_at BI286615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286615 /DB_XREF=gi:14941426 /DB_XREF=UI-R-CT0s-cap-d-12-0-UI.s1 /CLONE=UI-R-CT0s-cap-d-12-0-UI /FEA=EST /CNT=6 /TID=Rn.23291.1 /TIER=ConsEnd /STK=5 /UG=Rn.23291 /UG_TITLE=ESTs BI286615 1390232_at BM388441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388441 /DB_XREF=gi:18188494 /DB_XREF=UI-R-DZ0-ckm-a-21-0-UI.s1 /CLONE=UI-R-DZ0-ckm-a-21-0-UI /FEA=EST /CNT=6 /TID=Rn.16921.1 /TIER=ConsEnd /STK=5 /UG=Rn.16921 /UG_TITLE=ESTs, Weakly similar to S24169 mucin - rat (R.norvegicus) BM388441 similar to RIKEN cDNA 1810055G02 RGD1311946 309145 NM_001025683 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1390233_at BE107321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107321 /DB_XREF=gi:8499426 /DB_XREF=UI-R-BS1-ays-d-08-0-UI.s1 /CLONE=UI-R-BS1-ays-d-08-0-UI /FEA=EST /CNT=6 /TID=Rn.38778.1 /TIER=ConsEnd /STK=5 /UG=Rn.38778 /UG_TITLE=ESTs BE107321 GLI family zinc finger 2 Gli2 304729 NM_001107169 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001501 // skeletal system development // not recorded /// 0001649 // osteoblast differentiation // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0001822 // kidney development // not recorded /// 0002009 // morphogenesis of an epithelium // not recorded /// 0002076 // osteoblast development // not recorded /// 0006915 // apoptosis // not recorded /// 0007224 // smoothened signaling pathway // not recorded /// 0007382 // specification of segmental identity, maxillary segment // not recorded /// 0007389 // pattern specification process // not recorded /// 0007411 // axon guidance // not recorded /// 0007418 // ventral midline development // not recorded /// 0007442 // hindgut morphogenesis // not recorded /// 0007507 // heart development // not recorded /// 0008283 // cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008589 // regulation of smoothened signaling pathway // not recorded /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009913 // epidermal cell differentiation // not recorded /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0009954 // proximal/distal pattern formation // not recorded /// 0021508 // floor plate formation // not recorded /// 0021513 // spinal cord dorsal/ventral patterning // not recorded /// 0021517 // ventral spinal cord development // not recorded /// 0021696 // cerebellar cortex morphogenesis // not recorded /// 0021775 // smoothened signaling pathway involved in ventral spinal cord interneuron specification // not recorded /// 0021776 // smoothened signaling pathway involved in spinal cord motor neuron cell fate specification // not recorded /// 0021904 // dorsal/ventral neural tube patterning // not recorded /// 0021915 // neural tube development // not recorded /// 0021938 // smoothened signaling pathway involved in regulation of granule cell precursor cell proliferation // not recorded /// 0021965 // spinal cord ventral commissure morphogenesis // not recorded /// 0021983 // pituitary gland development // not recorded /// 0030154 // cell differentiation // not recorded /// 0030324 // lung development // not recorded /// 0030879 // mammary gland development // not recorded /// 0030902 // hindbrain development // not recorded /// 0032331 // negative regulation of chondrocyte differentiation // not recorded /// 0035295 // tube development // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042733 // embryonic digit morphogenesis // not recorded /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045740 // positive regulation of DNA replication // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048566 // embryonic digestive tract development // not recorded /// 0048589 // developmental growth // not recorded /// 0048646 // anatomical structure formation involved in morphogenesis // not recorded /// 0048666 // neuron development // not recorded /// 0048754 // branching morphogenesis of a tube // not recorded /// 0048856 // anatomical structure development // not recorded /// 0060032 // notochord regression // not recorded /// 0060513 // prostatic bud formation // not recorded /// 0060603 // mammary gland duct morphogenesis // not recorded /// 0060831 // smoothened signaling pathway involved in dorsal/ventral neural tube patterning // not recorded /// 0071407 // cellular response to organic cyclic substance // not recorded /// 0090103 // cochlea morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005929 // cilium // not recorded /// 0031512 // motile primary cilium // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // not recorded 1390234_at BE115465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115465 /DB_XREF=gi:8507570 /DB_XREF=UI-R-BS1-axw-b-08-0-UI.s1 /CLONE=UI-R-BS1-axw-b-08-0-UI /FEA=EST /CNT=6 /TID=Rn.17573.1 /TIER=ConsEnd /STK=5 /UG=Rn.17573 /UG_TITLE=ESTs, Highly similar to splicing factor 3b, subunit 1, 155 kDa (Mus musculus) (M.musculus) BE115465 splicing factor 3b, subunit 1 Sf3b1 84486 NM_053426 0008380 // RNA splicing // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390235_at BF410589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410589 /DB_XREF=gi:11398564 /DB_XREF=UI-R-CA0-bma-e-06-0-UI.s1 /CLONE=UI-R-CA0-bma-e-06-0-UI /FEA=EST /CNT=6 /TID=Rn.8256.1 /TIER=ConsEnd /STK=5 /UG=Rn.8256 /UG_TITLE=ESTs BF410589 1390236_at BF417216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417216 /DB_XREF=gi:11405205 /DB_XREF=UI-R-CN0-blc-d-10-0-UI.s1 /CLONE=UI-R-CN0-blc-d-10-0-UI /FEA=EST /CNT=6 /TID=Rn.27179.1 /TIER=ConsEnd /STK=5 /UG=Rn.27179 /UG_TITLE=ESTs BF417216 similar to hemicentin 1 LOC688582 688582 XR_085779 /// XR_086191 0008218 // bioluminescence // inferred from electronic annotation /// 0018298 // protein-chromophore linkage // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1390237_at BF558361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558361 /DB_XREF=gi:11668091 /DB_XREF=UI-R-E0-dm-f-07-0-UI.r1 /CLONE=UI-R-E0-dm-f-07-0-UI /FEA=EST /CNT=6 /TID=Rn.28125.1 /TIER=ConsEnd /STK=5 /UG=Rn.28125 /UG_TITLE=ESTs BF558361 translocase of inner mitochondrial membrane 8 homolog a1 (yeast) Timm8a1 84383 NM_053370 0006626 // protein targeting to mitochondrion // inferred from direct assay /// 0006626 // protein targeting to mitochondrion // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0045039 // protein import into mitochondrial inner membrane // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0042719 // mitochondrial intermembrane space protein transporter complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1390238_at BI291875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291875 /DB_XREF=gi:14951832 /DB_XREF=UI-R-DN0-ciu-c-23-0-UI.s1 /CLONE=UI-R-DN0-ciu-c-23-0-UI /FEA=EST /CNT=6 /TID=Rn.66961.1 /TIER=ConsEnd /STK=5 /UG=Rn.66961 /UG_TITLE=ESTs, Moderately similar to JG0168 gob-5 protein - mouse (M.musculus) BI291875 chloride channel calcium activated 3 Clca3 308015 NM_001107449 0016021 // integral to membrane // not recorded /// 0030141 // stored secretory granule // not recorded 1390239_at BE112417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112417 /DB_XREF=gi:8504522 /DB_XREF=UI-R-BJ1-avm-d-09-0-UI.s1 /CLONE=UI-R-BJ1-avm-d-09-0-UI /FEA=EST /CNT=6 /TID=Rn.15594.1 /TIER=ConsEnd /STK=5 /UG=Rn.15594 /UG_TITLE=ESTs BE112417 1390240_at BM389611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389611 /DB_XREF=gi:18189664 /DB_XREF=UI-R-CN1-cjo-c-13-0-UI.s1 /CLONE=UI-R-CN1-cjo-c-13-0-UI /FEA=EST /CNT=6 /TID=Rn.25146.1 /TIER=ConsEnd /STK=5 /UG=Rn.25146 /UG_TITLE=ESTs BM389611 1390241_at BI296888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296888 /DB_XREF=gi:14961761 /DB_XREF=UI-R-DK0-cgg-g-03-0-UI.s1 /CLONE=UI-R-DK0-cgg-g-03-0-UI /FEA=EST /CNT=6 /TID=Rn.19127.1 /TIER=ConsEnd /STK=5 /UG=Rn.19127 /UG_TITLE=ESTs BI296888 GRB10 interacting GYF protein 1 Gigyf1 304378 NM_001107133 0048009 // insulin-like growth factor receptor signaling pathway // not recorded 0005515 // protein binding // not recorded 1390242_at AA891123 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891123 /DB_XREF=gi:4132020 /DB_XREF=EST194926 /CLONE=RHEAP43 /FEA=EST /CNT=6 /TID=Rn.46357.1 /TIER=ConsEnd /STK=5 /UG=Rn.46357 /UG_TITLE=ESTs AA891123 1390243_at AI535191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535191 /DB_XREF=gi:4449326 /DB_XREF=UI-R-C3-ta-b-02-0-UI.s1 /CLONE=UI-R-C3-ta-b-02-0-UI /FEA=EST /CNT=6 /TID=Rn.18752.1 /TIER=ConsEnd /STK=5 /UG=Rn.18752 /UG_TITLE=ESTs AI535191 1390244_at BF418231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418231 /DB_XREF=gi:11406220 /DB_XREF=UI-R-CN0-blw-c-06-0-UI.s1 /CLONE=UI-R-CN0-blw-c-06-0-UI /FEA=EST /CNT=6 /TID=Rn.45270.1 /TIER=ConsEnd /STK=5 /UG=Rn.45270 /UG_TITLE=ESTs BF418231 spermatogenesis associated, serine-rich 2 Spats2 300221 NM_001191614 /// XM_001062003 /// XM_217030 0005737 // cytoplasm // not recorded 1390245_at BI298090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298090 /DB_XREF=gi:14974370 /DB_XREF=UI-R-CV2-chf-c-06-0-UI.s1 /CLONE=UI-R-CV2-chf-c-06-0-UI /FEA=EST /CNT=6 /TID=Rn.73360.1 /TIER=ConsEnd /STK=5 /UG=Rn.73360 /UG_TITLE=ESTs, Highly similar to T43484 hypothetical protein DKFZp434K016.1 (H.sapiens) BI298090 intraflagellar transport 122 homolog (Chlamydomonas) Ift122 312651 XM_001054604 /// XM_001057925 0019861 // flagellum // inferred from electronic annotation 1390246_at AI100769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI100769 /DB_XREF=gi:3705814 /DB_XREF=EST210058 /CLONE=RBRBA05 /FEA=EST /CNT=6 /TID=Rn.22416.1 /TIER=ConsEnd /STK=5 /UG=Rn.22416 /UG_TITLE=ESTs AI100769 1390247_at BI275999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275999 /DB_XREF=gi:14920479 /DB_XREF=UI-R-CX0-bxi-h-10-0-UI.s1 /CLONE=UI-R-CX0-bxi-h-10-0-UI /FEA=EST /CNT=6 /TID=Rn.18259.1 /TIER=ConsEnd /STK=5 /UG=Rn.18259 /UG_TITLE=ESTs BI275999 AT rich interactive domain 3B (Bright like) Arid3b 367092 NM_001109001 0005622 // intracellular // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1390248_at AW142935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142935 /DB_XREF=gi:6162834 /DB_XREF=EST293226 /CLONE=RGIAZ81 /FEA=EST /CNT=6 /TID=Rn.18369.1 /TIER=ConsEnd /STK=5 /UG=Rn.18369 /UG_TITLE=ESTs, Moderately similar to PUR MOUSE TRANSCRIPTIONAL ACTIVATOR PROTEIN PUR-ALPHA (M.musculus) AW142935 1390249_at BF558075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558075 /DB_XREF=gi:11667805 /DB_XREF=UI-R-C0-hk-a-06-0-UI.r1 /CLONE=UI-R-C0-hk-a-06-0-UI /FEA=EST /CNT=6 /TID=Rn.12491.1 /TIER=ConsEnd /STK=5 /UG=Rn.12491 /UG_TITLE=ESTs BF558075 similar to human chromosome 15 open reading frame 39 RGD1305464 315702 NM_001025011 1390250_x_at BI273855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI273855 /DB_XREF=gi:14884214 /DB_XREF=UI-R-CW0-bvz-g-05-0-UI.s1 /CLONE=UI-R-CW0-bvz-g-05-0-UI /FEA=EST /CNT=6 /TID=Rn.24221.1 /TIER=ConsEnd /STK=5 /UG=Rn.24221 /UG_TITLE=ESTs BI273855 Probable phospholipid-transporting ATPase ID-like LOC100364800 100364800 XM_002725994 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0015914 // phospholipid transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004012 // phospholipid-translocating ATPase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation 1390251_at BF418998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418998 /DB_XREF=gi:11406987 /DB_XREF=UI-R-BJ2-bqm-d-03-0-UI.s1 /CLONE=UI-R-BJ2-bqm-d-03-0-UI /FEA=EST /CNT=6 /TID=Rn.13263.1 /TIER=ConsEnd /STK=5 /UG=Rn.13263 /UG_TITLE=ESTs BF418998 HHIP-like 1 Hhipl1 362781 XM_001069270 /// XM_343107 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0016901 // oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor // inferred from electronic annotation /// 0048038 // quinone binding // inferred from electronic annotation 1390252_at AI176825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176825 /DB_XREF=gi:4134927 /DB_XREF=EST220424 /CLONE=ROVBX33 /FEA=EST /CNT=6 /TID=Rn.19478.1 /TIER=ConsEnd /STK=5 /UG=Rn.19478 /UG_TITLE=ESTs AI176825 1390253_at BF395083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395083 /DB_XREF=gi:11380044 /DB_XREF=UI-R-CM0-bji-e-10-0-UI.s1 /CLONE=UI-R-CM0-bji-e-10-0-UI /FEA=EST /CNT=6 /TID=Rn.20951.1 /TIER=ConsEnd /STK=5 /UG=Rn.20951 /UG_TITLE=ESTs BF395083 ankyrin repeat domain 9 Ankrd9 314457 NM_001012112 1390254_at BG380253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380253 /DB_XREF=gi:13304725 /DB_XREF=UI-R-CS0-btq-g-11-0-UI.s1 /CLONE=UI-R-CS0-btq-g-11-0-UI /FEA=EST /CNT=6 /TID=Rn.48878.1 /TIER=ConsEnd /STK=5 /UG=Rn.48878 /UG_TITLE=ESTs BG380253 1390255_at BG381583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381583 /DB_XREF=gi:13306055 /DB_XREF=UI-R-CT0-bud-a-02-0-UI.s1 /CLONE=UI-R-CT0-bud-a-02-0-UI /FEA=EST /CNT=6 /TID=Rn.39111.1 /TIER=ConsEnd /STK=5 /UG=Rn.39111 /UG_TITLE=ESTs BG381583 1390256_at AW530389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530389 /DB_XREF=gi:7172766 /DB_XREF=UI-R-BU0-amv-f-01-0-UI.s1 /CLONE=UI-R-BU0-amv-f-01-0-UI /FEA=EST /CNT=6 /TID=Rn.46444.1 /TIER=ConsEnd /STK=5 /UG=Rn.46444 /UG_TITLE=ESTs AW530389 1390257_at BG376956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376956 /DB_XREF=gi:13301428 /DB_XREF=UI-R-CU0-bvl-e-03-0-UI.s1 /CLONE=UI-R-CU0-bvl-e-03-0-UI /FEA=EST /CNT=6 /TID=Rn.28719.1 /TIER=ConsEnd /STK=5 /UG=Rn.28719 /UG_TITLE=ESTs BG376956 VAMP (vesicle-associated membrane protein)-associated protein B and C Vapb 60431 NM_021847 0019048 // virus-host interaction // not recorded /// 0019048 // virus-host interaction // inferred from sequence or structural similarity /// 0019048 // virus-host interaction // inferred from electronic annotation /// 0030968 // endoplasmic reticulum unfolded protein response // not recorded /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from sequence or structural similarity /// 0030968 // endoplasmic reticulum unfolded protein response // inferred from electronic annotation /// 0045070 // positive regulation of viral genome replication // not recorded /// 0045070 // positive regulation of viral genome replication // inferred from sequence or structural similarity /// 0045070 // positive regulation of viral genome replication // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from sequence or structural similarity /// 0019899 // enzyme binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0048487 // beta-tubulin binding // not recorded /// 0048487 // beta-tubulin binding // inferred from sequence or structural similarity /// 0048487 // beta-tubulin binding // inferred from electronic annotation 1390258_at AA893505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893505 /DB_XREF=gi:3020384 /DB_XREF=EST197308 /CLONE=RLIAD30 /FEA=EST /CNT=6 /TID=Rn.14807.1 /TIER=ConsEnd /STK=5 /UG=Rn.14807 /UG_TITLE=ESTs AA893505 1390259_at AI231279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231279 /DB_XREF=gi:3815159 /DB_XREF=EST227967 /CLONE=REMDI10 /FEA=EST /CNT=6 /TID=Rn.24937.1 /TIER=ConsEnd /STK=5 /UG=Rn.24937 /UG_TITLE=ESTs AI231279 ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast) Ube2d1 361831 NM_001108530 0000209 // protein polyubiquitination // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0030509 // BMP signaling pathway // not recorded /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0070936 // protein K48-linked ubiquitination // inferred from sequence or structural similarity 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1390260_at AI177766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177766 /DB_XREF=gi:4135021 /DB_XREF=EST221409 /CLONE=RPLCF91 /FEA=EST /CNT=6 /TID=Rn.23420.1 /TIER=ConsEnd /STK=5 /UG=Rn.23420 /UG_TITLE=ESTs, Weakly similar to CRK7_HUMAN CELL DIVISION CYCLE 2-RELATED PROTEIN KINASE 7 (CDC2-RELATED PROTEIN KINASE 7) (CRKRS) (H.sapiens) AI177766 Cell division cycle 2-like 5 (cholinesterase-related cell division controller) Cdc2l5 306998 XM_001053539 /// XM_001053609 /// XM_225404 0006468 // protein phosphorylation // inferred from electronic annotation 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1390261_at AI059850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059850 /DB_XREF=gi:3333627 /DB_XREF=UI-R-C1-kr-e-12-0-UI.s1 /CLONE=UI-R-C1-kr-e-12-0-UI /FEA=EST /CNT=6 /TID=Rn.16076.1 /TIER=ConsEnd /STK=5 /UG=Rn.16076 /UG_TITLE=ESTs AI059850 Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans) Smg5 681012 XM_001059906 /// XM_002725989 0035303 // regulation of dephosphorylation // inferred from electronic annotation /// 0035303 // regulation of dephosphorylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051721 // protein phosphatase 2A binding // inferred from electronic annotation /// 0051721 // protein phosphatase 2A binding // not recorded 1390262_a_at AI705744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI705744 /DB_XREF=gi:4993644 /DB_XREF=UI-R-AD1-zq-d-01-0-UI.s1 /CLONE=UI-R-AD1-zq-d-01-0-UI /FEA=EST /CNT=6 /TID=Rn.41398.1 /TIER=ConsEnd /STK=5 /UG=Rn.41398 /UG_TITLE=ESTs, Weakly similar to Y167_HUMAN HYPOTHETICAL PROTEIN KIAA0167 (H.sapiens) AI705744 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 Agap3 362300 NM_001108616 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1390263_at AI179936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179936 /DB_XREF=gi:3730574 /DB_XREF=EST223667 /CLONE=RSPCN92 /FEA=EST /CNT=6 /TID=Rn.55907.1 /TIER=ConsEnd /STK=5 /UG=Rn.55907 /UG_TITLE=ESTs AI179936 1390264_at BF413854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413854 /DB_XREF=gi:11401843 /DB_XREF=UI-R-CA0-boj-e-01-0-UI.s1 /CLONE=UI-R-CA0-boj-e-01-0-UI /FEA=EST /CNT=6 /TID=Rn.13279.1 /TIER=ConsEnd /STK=5 /UG=Rn.13279 /UG_TITLE=ESTs BF413854 similar to RIKEN cDNA 1200014J11 RGD1308139 360563 NM_001108281 0000166 // nucleotide binding // inferred from electronic annotation 1390265_at BE097995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097995 /DB_XREF=gi:8488889 /DB_XREF=UI-R-C4-amc-b-05-0-UI.s1 /CLONE=UI-R-C4-amc-b-05-0-UI /FEA=EST /CNT=6 /TID=Rn.4154.1 /TIER=ConsEnd /STK=5 /UG=Rn.4154 /UG_TITLE=ESTs, Weakly similar to S35371 finger protein neuralized - fruit fly (D.melanogaster) BE097995 Similar to neuralized homolog RGD1564984 303019 NM_001142652 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390266_at BF397998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397998 /DB_XREF=gi:11382983 /DB_XREF=UI-R-BS2-beg-b-04-0-UI.s1 /CLONE=UI-R-BS2-beg-b-04-0-UI /FEA=EST /CNT=6 /TID=Rn.24095.1 /TIER=ConsEnd /STK=5 /UG=Rn.24095 /UG_TITLE=ESTs BF397998 1390267_at AW915175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915175 /DB_XREF=gi:8080862 /DB_XREF=EST346479 /CLONE=RGICL86 /FEA=EST /CNT=6 /TID=Rn.8968.1 /TIER=ConsEnd /STK=5 /UG=Rn.8968 /UG_TITLE=ESTs, Weakly similar to YFBYAM phenylalanine--tRNA ligase (EC 6.1.1.20) alpha chain precursor, mitochondrial - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AW915175 phenylalanyl-tRNA synthetase 2, mitochondrial Fars2 306879 NM_001013139 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006432 // phenylalanyl-tRNA aminoacylation // inferred from electronic annotation /// 0006432 // phenylalanyl-tRNA aminoacylation // not recorded /// 0006432 // phenylalanyl-tRNA aminoacylation // inferred from sequence or structural similarity /// 0008033 // tRNA processing // not recorded /// 0008033 // tRNA processing // inferred from sequence or structural similarity /// 0008033 // tRNA processing // inferred from electronic annotation /// 0043039 // tRNA aminoacylation // inferred from electronic annotation 0005625 // soluble fraction // not recorded /// 0005625 // soluble fraction // inferred from sequence or structural similarity /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded 0000049 // tRNA binding // inferred from electronic annotation /// 0000049 // tRNA binding // not recorded /// 0000049 // tRNA binding // inferred from sequence or structural similarity /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004826 // phenylalanine-tRNA ligase activity // inferred from electronic annotation /// 0004826 // phenylalanine-tRNA ligase activity // not recorded /// 0004826 // phenylalanine-tRNA ligase activity // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1390268_at AI013484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013484 /DB_XREF=gi:4133883 /DB_XREF=EST208159 /CLONE=RSPBM16 /FEA=EST /CNT=8 /TID=Rn.18008.1 /TIER=ConsEnd /STK=5 /UG=Rn.18008 /UG_TITLE=ESTs AI013484 RAB35, member RAS oncogene family Rab35 288700 NM_001013046 0000910 // cytokinesis // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016197 // endosome transport // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005905 // coated pit // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031253 // cell projection membrane // not recorded /// 0042470 // melanosome // inferred from electronic annotation /// 0045171 // intercellular bridge // not recorded /// 0045334 // clathrin-coated endocytic vesicle // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // not recorded 1390269_at BF418593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418593 /DB_XREF=gi:11406582 /DB_XREF=UI-R-BJ2-bqh-g-03-0-UI.s1 /CLONE=UI-R-BJ2-bqh-g-03-0-UI /FEA=EST /CNT=7 /TID=Rn.34141.1 /TIER=ConsEnd /STK=5 /UG=Rn.34141 /UG_TITLE=ESTs, Highly similar to located at OATL1 (H.sapiens) BF418593 TBC1 domain family, member 25 Tbc1d25 302552 NM_001106955 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1390270_at BF400616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400616 /DB_XREF=gi:11388591 /DB_XREF=UI-R-CA0-bhd-e-04-0-UI.s1 /CLONE=UI-R-CA0-bhd-e-04-0-UI /FEA=EST /CNT=5 /TID=Rn.59804.1 /TIER=ConsEnd /STK=5 /UG=Rn.59804 /UG_TITLE=ESTs BF400616 1390271_at BM392202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392202 /DB_XREF=gi:18192255 /DB_XREF=UI-R-DO1-ckp-o-12-0-UI.s1 /CLONE=UI-R-DO1-ckp-o-12-0-UI /FEA=EST /CNT=5 /TID=Rn.66183.1 /TIER=ConsEnd /STK=5 /UG=Rn.66183 /UG_TITLE=ESTs BM392202 pleckstrin homology domain containing, family A member 6 Plekha6 360842 XM_001060716 /// XM_341118 0005515 // protein binding // inferred from electronic annotation 1390272_at BM386608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386608 /DB_XREF=gi:18186661 /DB_XREF=UI-R-CN1-cjg-b-03-0-UI.s1 /CLONE=UI-R-CN1-cjg-b-03-0-UI /FEA=EST /CNT=5 /TID=Rn.12336.1 /TIER=ConsEnd /STK=5 /UG=Rn.12336 /UG_TITLE=ESTs, Weakly similar to T18768 hypothetical protein B0491.7 - Caenorhabditis elegans (C.elegans) BM386608 DPH5 homolog (S. cerevisiae) Dph5 295394 NM_001017449 0008152 // metabolic process // inferred from electronic annotation /// 0017183 // peptidyl-diphthamide biosynthetic process from peptidyl-histidine // inferred from electronic annotation 0004164 // diphthine synthase activity // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation 1390273_at BE108849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108849 /DB_XREF=gi:8500954 /DB_XREF=UI-R-BS1-ayz-b-02-0-UI.s1 /CLONE=UI-R-BS1-ayz-b-02-0-UI /FEA=EST /CNT=5 /TID=Rn.51628.1 /TIER=ConsEnd /STK=5 /UG=Rn.51628 /UG_TITLE=ESTs BE108849 1390274_at AI170313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170313 /DB_XREF=gi:3710353 /DB_XREF=EST216239 /CLONE=RLUCG81 /FEA=EST /CNT=5 /TID=Rn.12990.1 /TIER=ConsEnd /STK=5 /UG=Rn.12990 /UG_TITLE=ESTs AI170313 plexin A2 Plxna2 289392 NM_001105988 0001756 // somitogenesis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0021915 // neural tube development // not recorded /// 0021935 // granule cell precursor tangential migration // not recorded /// 0051642 // centrosome localization // not recorded /// 0060037 // pharyngeal system development // not recorded /// 0060174 // limb bud formation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0017154 // semaphorin receptor activity // not recorded 1390275_at BI285110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285110 /DB_XREF=gi:14938426 /DB_XREF=UI-R-DB0-byw-c-08-0-UI.s1 /CLONE=UI-R-DB0-byw-c-08-0-UI /FEA=EST /CNT=5 /TID=Rn.54037.1 /TIER=ConsEnd /STK=5 /UG=Rn.54037 /UG_TITLE=ESTs, Moderately similar to CYTS RAT CYSTATIN S PRECURSOR (R.norvegicus) BI285110 cystatin-S-like /// cystatin-S-like /// similar to Cystatin S precursor (LM protein) /// similar to Cystatin S precursor (LM protein) /// similar to Cystatin S precursor (LM protein) LOC100365949 /// LOC100366013 /// LOC689212 /// LOC689220 /// RGD1560483 100365949 /// 100366013 /// 296516 /// 689212 /// 689220 XM_001070024 /// XM_002726241 /// XM_231013 /// XR_085795 /// XR_085796 /// XR_086212 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1390276_at BI296669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296669 /DB_XREF=gi:14961327 /DB_XREF=UI-R-CV2-cgt-h-11-0-UI.s1 /CLONE=UI-R-CV2-cgt-h-11-0-UI /FEA=EST /CNT=5 /TID=Rn.66326.1 /TIER=ConsEnd /STK=5 /UG=Rn.66326 /UG_TITLE=ESTs BI296669 1390277_at BF399451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399451 /DB_XREF=gi:11384459 /DB_XREF=UI-R-CA1-bjb-l-09-0-UI.s1 /CLONE=UI-R-CA1-bjb-l-09-0-UI /FEA=EST /CNT=5 /TID=Rn.58210.1 /TIER=ConsEnd /STK=5 /UG=Rn.58210 /UG_TITLE=ESTs BF399451 1390278_at BI279652 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279652 /DB_XREF=gi:14927672 /DB_XREF=UI-R-DE0-caf-a-11-0-UI.s1 /CLONE=UI-R-DE0-caf-a-11-0-UI /FEA=EST /CNT=5 /TID=Rn.8752.1 /TIER=ConsEnd /STK=5 /UG=Rn.8752 /UG_TITLE=ESTs BI279652 transformer 2 alpha homolog (Drosophila) Tra2a 500116 NM_001126296 0000398 // nuclear mRNA splicing, via spliceosome // inferred from electronic annotation /// 0000398 // nuclear mRNA splicing, via spliceosome // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1390279_at BI282086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282086 /DB_XREF=gi:14932482 /DB_XREF=UI-R-CU0s-cbw-d-06-0-UI.s1 /CLONE=UI-R-CU0s-cbw-d-06-0-UI /FEA=EST /CNT=5 /TID=Rn.18732.1 /TIER=ConsEnd /STK=5 /UG=Rn.18732 /UG_TITLE=ESTs BI282086 tumor suppressing subtransferable candidate 4 Tssc4 361682 NM_001013194 1390280_at BF396115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396115 /DB_XREF=gi:11381087 /DB_XREF=UI-R-CA1-bcb-e-04-0-UI.s1 /CLONE=UI-R-CA1-bcb-e-04-0-UI /FEA=EST /CNT=5 /TID=Rn.46518.1 /TIER=ConsEnd /STK=5 /UG=Rn.46518 /UG_TITLE=ESTs BF396115 1390281_a_at AI407062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407062 /DB_XREF=gi:4250566 /DB_XREF=EST235350 /CLONE=ROVDR47 /FEA=EST /CNT=5 /TID=Rn.25373.1 /TIER=ConsEnd /STK=5 /UG=Rn.25373 /UG_TITLE=ESTs AI407062 coenzyme Q10 homolog A (S. cerevisiae) Coq10a 362810 NM_001108727 1390282_at BI274639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274639 /DB_XREF=gi:14885742 /DB_XREF=UI-R-CX0-bws-c-06-0-UI.s1 /CLONE=UI-R-CX0-bws-c-06-0-UI /FEA=EST /CNT=5 /TID=Rn.6389.1 /TIER=ConsEnd /STK=5 /UG=Rn.6389 /UG_TITLE=ESTs BI274639 cytochrome P450, family 2, subfamily s, polypeptide 1 Cyp2s1 308445 NM_001107495 0055114 // oxidation reduction // inferred from electronic annotation 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008401 // retinoic acid 4-hydroxylase activity // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390283_at BI274636 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274636 /DB_XREF=gi:14885734 /DB_XREF=UI-R-CX0-bws-c-02-0-UI.s1 /CLONE=UI-R-CX0-bws-c-02-0-UI /FEA=EST /CNT=5 /TID=Rn.33103.1 /TIER=ConsEnd /STK=5 /UG=Rn.33103 /UG_TITLE=ESTs BI274636 transcription factor 3 Tcf3 312451 NM_001107865 0008595 // anterior/posterior axis specification, embryo // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0046022 // positive regulation of transcription from RNA polymerase II promoter during mitosis // not recorded /// 0048319 // axial mesoderm morphogenesis // not recorded /// 0048863 // stem cell differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0008013 // beta-catenin binding // not recorded 1390284_at BM383683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383683 /DB_XREF=gi:18183736 /DB_XREF=UI-R-DM1-ckb-a-19-0-UI.s1 /CLONE=UI-R-DM1-ckb-a-19-0-UI /FEA=EST /CNT=5 /TID=Rn.19815.1 /TIER=ConsEnd /STK=5 /UG=Rn.19815 /UG_TITLE=ESTs BM383683 coiled-coil domain containing 77 Ccdc77 312677 NM_001191752 /// XM_001058323 /// XM_232333 1390285_at AI178948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178948 /DB_XREF=gi:3729586 /DB_XREF=EST222630 /CLONE=RSPBT60 /FEA=EST /CNT=5 /TID=Rn.13220.1 /TIER=ConsEnd /STK=5 /UG=Rn.13220 /UG_TITLE=ESTs AI178948 EF-hand calcium binding domain 4A Efcab4a 309112 NM_001127541 0002115 // store-operated calcium entry // not recorded /// 0002115 // store-operated calcium entry // inferred from sequence or structural similarity 0005509 // calcium ion binding // inferred from electronic annotation 1390286_at BM387144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387144 /DB_XREF=gi:18187197 /DB_XREF=UI-R-CN1-cji-f-13-0-UI.s1 /CLONE=UI-R-CN1-cji-f-13-0-UI /FEA=EST /CNT=5 /TID=Rn.59091.1 /TIER=ConsEnd /STK=5 /UG=Rn.59091 /UG_TITLE=ESTs BM387144 sin3A-binding protein, SAP25 Sap25 288559 XM_001076431 /// XM_213736 0005515 // protein binding // not recorded 1390287_at BM386830 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386830 /DB_XREF=gi:18186883 /DB_XREF=UI-R-CN1-cjh-k-08-0-UI.s1 /CLONE=UI-R-CN1-cjh-k-08-0-UI /FEA=EST /CNT=5 /TID=Rn.47919.1 /TIER=ConsEnd /STK=5 /UG=Rn.47919 /UG_TITLE=ESTs BM386830 bridging integrator 2 Bin2 366988 NM_001012223 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390288_at AI013362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013362 /DB_XREF=gi:3227418 /DB_XREF=EST208037 /CLONE=RSPBK03 /FEA=EST /CNT=5 /TID=Rn.17994.1 /TIER=ConsEnd /STK=5 /UG=Rn.17994 /UG_TITLE=ESTs AI013362 protein serine kinase H1 Pskh1 364993 NM_001108897 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1390289_at BI283804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283804 /DB_XREF=gi:14935908 /DB_XREF=UI-R-CW0s-cch-h-07-0-UI.s1 /CLONE=UI-R-CW0s-cch-h-07-0-UI /FEA=EST /CNT=5 /TID=Rn.11982.1 /TIER=ConsEnd /STK=5 /UG=Rn.11982 /UG_TITLE=ESTs, Moderately similar to Y274_HUMAN HYPOTHETICAL PROTEIN KIAA0274 (H.sapiens) BI283804 FIG4 homolog (S. cerevisiae) Fig4 309855 NM_001047096 0007033 // vacuole organization // inferred from electronic annotation /// 0007033 // vacuole organization // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0010976 // positive regulation of neuron projection development // inferred from mutant phenotype /// 0030384 // phosphoinositide metabolic process // inferred from electronic annotation /// 0030384 // phosphoinositide metabolic process // not recorded /// 0043473 // pigmentation // inferred from electronic annotation /// 0043473 // pigmentation // not recorded /// 0048666 // neuron development // inferred from electronic annotation /// 0048666 // neuron development // not recorded 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0010008 // endosome membrane // inferred from electronic annotation /// 0010008 // endosome membrane // not recorded /// 0055037 // recycling endosome // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017120 // polyphosphoinositide phosphatase activity // inferred from direct assay 1390290_at BF396659 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396659 /DB_XREF=gi:11381638 /DB_XREF=UI-R-BS2-bea-f-07-0-UI.s1 /CLONE=UI-R-BS2-bea-f-07-0-UI /FEA=EST /CNT=5 /TID=Rn.27723.1 /TIER=ConsEnd /STK=5 /UG=Rn.27723 /UG_TITLE=ESTs BF396659 surfeit 6 Surf6 303076 NM_001015014 0042254 // ribosome biogenesis // not recorded 0001652 // granular component // not recorded /// 0005730 // nucleolus // not recorded /// 0044451 // nucleoplasm part // not recorded 0003677 // DNA binding // not recorded /// 0003723 // RNA binding // not recorded 1390291_at BG375126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375126 /DB_XREF=gi:13299598 /DB_XREF=UI-R-CV1-bsx-d-08-0-UI.s1 /CLONE=UI-R-CV1-bsx-d-08-0-UI /FEA=EST /CNT=5 /TID=Rn.52790.1 /TIER=ConsEnd /STK=5 /UG=Rn.52790 /UG_TITLE=ESTs BG375126 1390292_at AW527467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527467 /DB_XREF=gi:7169881 /DB_XREF=UI-R-BO1-ajt-f-08-0-UI.s1 /CLONE=UI-R-BO1-ajt-f-08-0-UI /FEA=EST /CNT=5 /TID=Rn.46541.1 /TIER=ConsEnd /STK=5 /UG=Rn.46541 /UG_TITLE=ESTs AW527467 transmembrane protein 8A Tmem8a 303004 NM_001106991 0016021 // integral to membrane // inferred from electronic annotation 1390293_at BF394011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394011 /DB_XREF=gi:11378840 /DB_XREF=UI-R-CA0-bgx-d-03-0-UI.s1 /CLONE=UI-R-CA0-bgx-d-03-0-UI /FEA=EST /CNT=5 /TID=Rn.60160.1 /TIER=ConsEnd /STK=5 /UG=Rn.60160 /UG_TITLE=ESTs BF394011 1390294_at BE100986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100986 /DB_XREF=gi:8492890 /DB_XREF=UI-R-BJ1-aug-g-08-0-UI.s1 /CLONE=UI-R-BJ1-aug-g-08-0-UI /FEA=EST /CNT=5 /TID=Rn.26694.1 /TIER=ConsEnd /STK=5 /UG=Rn.26694 /UG_TITLE=ESTs BE100986 ataxin 7-like 4 Atxn7l4 362726 1390295_at BF390636 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390636 /DB_XREF=gi:11375483 /DB_XREF=UI-R-CA1-bck-e-04-0-UI.s1 /CLONE=UI-R-CA1-bck-e-04-0-UI /FEA=EST /CNT=5 /TID=Rn.32786.1 /TIER=ConsEnd /STK=5 /UG=Rn.32786 /UG_TITLE=ESTs BF390636 Aftiphilin Aftph 305544 XM_001055784 /// XM_223651 0005829 // cytosol // not recorded /// 0030121 // AP-1 adaptor complex // not recorded 0030276 // clathrin binding // not recorded 1390296_at BF410183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410183 /DB_XREF=gi:11398158 /DB_XREF=UI-R-CA1-bju-d-12-0-UI.s1 /CLONE=UI-R-CA1-bju-d-12-0-UI /FEA=EST /CNT=5 /TID=Rn.61608.1 /TIER=ConsEnd /STK=5 /UG=Rn.61608 /UG_TITLE=ESTs BF410183 1390297_at BF395781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395781 /DB_XREF=gi:11380752 /DB_XREF=UI-R-BT1-bkc-c-03-0-UI.s1 /CLONE=UI-R-BT1-bkc-c-03-0-UI /FEA=EST /CNT=5 /TID=Rn.58125.1 /TIER=ConsEnd /STK=5 /UG=Rn.58125 /UG_TITLE=ESTs BF395781 zinc finger CCCH type containing 14 Zc3h14 192359 NM_001033951 /// NM_138920 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390298_at BI287856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287856 /DB_XREF=gi:14943879 /DB_XREF=UI-R-CW0s-ccm-a-08-0-UI.s1 /CLONE=UI-R-CW0s-ccm-a-08-0-UI /FEA=EST /CNT=5 /TID=Rn.18150.1 /TIER=ConsEnd /STK=5 /UG=Rn.18150 /UG_TITLE=ESTs BI287856 sorting nexin 18 Snx18 310097 NM_001107652 0007154 // cell communication // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1390299_at BF405880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405880 /DB_XREF=gi:11393855 /DB_XREF=UI-R-CA1-bii-b-03-0-UI.s1 /CLONE=UI-R-CA1-bii-b-03-0-UI /FEA=EST /CNT=5 /TID=Rn.63509.1 /TIER=ConsEnd /STK=5 /UG=Rn.63509 /UG_TITLE=ESTs BF405880 1390300_at BM383635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383635 /DB_XREF=gi:18183688 /DB_XREF=UI-R-DM1-cka-h-18-0-UI.s1 /CLONE=UI-R-DM1-cka-h-18-0-UI /FEA=EST /CNT=5 /TID=Rn.53092.1 /TIER=ConsEnd /STK=5 /UG=Rn.53092 /UG_TITLE=ESTs, Weakly similar to S21976 probable RNA-directed DNA polymerase (R.norvegicus) BM383635 1390301_at AW524414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524414 /DB_XREF=gi:7166799 /DB_XREF=UI-R-BO0-ahx-b-02-0-UI.s1 /CLONE=UI-R-BO0-ahx-b-02-0-UI /FEA=EST /CNT=5 /TID=Rn.15569.1 /TIER=ConsEnd /STK=5 /UG=Rn.15569 /UG_TITLE=ESTs AW524414 1390302_at BF413182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413182 /DB_XREF=gi:11401171 /DB_XREF=UI-R-BT1-bnx-f-10-0-UI.s1 /CLONE=UI-R-BT1-bnx-f-10-0-UI /FEA=EST /CNT=5 /TID=Rn.62273.1 /TIER=ConsEnd /STK=5 /UG=Rn.62273 /UG_TITLE=ESTs BF413182 1390303_at BF390840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390840 /DB_XREF=gi:11375687 /DB_XREF=UI-R-CA1-bci-a-11-0-UI.s1 /CLONE=UI-R-CA1-bci-a-11-0-UI /FEA=EST /CNT=5 /TID=Rn.64324.1 /TIER=ConsEnd /STK=5 /UG=Rn.64324 /UG_TITLE=ESTs BF390840 1390304_at AW533982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533982 /DB_XREF=gi:7176396 /DB_XREF=UI-R-C4-alr-d-12-0-UI.s1 /CLONE=UI-R-C4-alr-d-12-0-UI /FEA=EST /CNT=5 /TID=Rn.41383.1 /TIER=ConsEnd /STK=5 /UG=Rn.41383 /UG_TITLE=ESTs, Highly similar to GAS1 MOUSE GROWTH-ARREST-SPECIFIC PROTEIN 1 (M.musculus) AW533982 1390305_at AI599263 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599263 /DB_XREF=gi:4608311 /DB_XREF=EST250966 /CLONE=REMEP57 /FEA=EST /CNT=5 /TID=Rn.23808.1 /TIER=ConsEnd /STK=5 /UG=Rn.23808 /UG_TITLE=ESTs AI599263 zinc finger, MYND-type containing 8 Zmynd8 296374 NM_001100838 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390306_at AW531909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531909 /DB_XREF=gi:7174323 /DB_XREF=UI-R-BS0-amj-g-06-0-UI.s1 /CLONE=UI-R-BS0-amj-g-06-0-UI /FEA=EST /CNT=5 /TID=Rn.47844.1 /TIER=ConsEnd /STK=5 /UG=Rn.47844 /UG_TITLE=ESTs AW531909 1390307_at BF404820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404820 /DB_XREF=gi:11392795 /DB_XREF=UI-R-CA1-bic-a-10-0-UI.s1 /CLONE=UI-R-CA1-bic-a-10-0-UI /FEA=EST /CNT=5 /TID=Rn.58044.1 /TIER=ConsEnd /STK=5 /UG=Rn.58044 /UG_TITLE=ESTs, Weakly similar to T12482 hypothetical protein DKFZp564P0662.1 (H.sapiens) BF404820 similar to novel protein RGD1561672 305610 XM_001065540 /// XM_223715 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 1390308_at BF394504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394504 /DB_XREF=gi:11379370 /DB_XREF=UI-R-CA0-bfw-f-06-0-UI.s1 /CLONE=UI-R-CA0-bfw-f-06-0-UI /FEA=EST /CNT=5 /TID=Rn.62278.1 /TIER=ConsEnd /STK=5 /UG=Rn.62278 /UG_TITLE=ESTs BF394504 1390309_a_at BG372822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372822 /DB_XREF=gi:13269359 /DB_XREF=UI-R-CV1-bsa-c-01-0-UI.s1 /CLONE=UI-R-CV1-bsa-c-01-0-UI /FEA=EST /CNT=5 /TID=Rn.15174.1 /TIER=ConsEnd /STK=5 /UG=Rn.15174 /UG_TITLE=ESTs BG372822 1390310_at BM387411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387411 /DB_XREF=gi:18187459 /DB_XREF=UI-R-CN1-cjj-m-21-0-UI.s1 /CLONE=UI-R-CN1-cjj-m-21-0-UI /FEA=EST /CNT=5 /TID=Rn.40539.1 /TIER=ConsEnd /STK=5 /UG=Rn.40539 /UG_TITLE=ESTs BM387411 intercellular adhesion molecule 2 Icam2 360647 NM_001007725 0016337 // cell-cell adhesion // inferred from electronic annotation 0001931 // uropod // inferred from electronic annotation /// 0001931 // uropod // not recorded /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005178 // integrin binding // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390311_at AW528602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528602 /DB_XREF=gi:7171016 /DB_XREF=UI-R-BO1-ajr-c-04-0-UI.s1 /CLONE=UI-R-BO1-ajr-c-04-0-UI /FEA=EST /CNT=5 /TID=Rn.35128.1 /TIER=ConsEnd /STK=5 /UG=Rn.35128 /UG_TITLE=ESTs AW528602 Tubulin tyrosine ligase Ttl 171572 NM_138536 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0000226 // microtubule cytoskeleton organization // not recorded /// 0006464 // protein modification process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0030516 // regulation of axon extension // inferred from electronic annotation /// 0030516 // regulation of axon extension // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004835 // tubulin-tyrosine ligase activity // inferred from direct assay /// 0004835 // tubulin-tyrosine ligase activity // not recorded /// 0004835 // tubulin-tyrosine ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1390312_at BG670441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670441 /DB_XREF=gi:13892540 /DB_XREF=DRNBBC04 /CLONE=DRNBBC04 /FEA=EST /CNT=5 /TID=Rn.41216.1 /TIER=ConsEnd /STK=5 /UG=Rn.41216 /UG_TITLE=ESTs BG670441 similar to sterile alpha motif domain containing 9-like /// similar to sterile alpha motif domain containing 9-like /// similar to mKIAA2005 protein /// sterile alpha motif domain containing 9-like LOC500013 /// LOC680260 /// RGD1561472 /// Samd9l 500012 /// 500013 /// 500015 /// 680260 XM_001069386 /// XM_575369 /// XR_005677 /// XR_008610 /// XR_008617 /// XR_086222 /// XR_086223 1390313_at BF390740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390740 /DB_XREF=gi:11375587 /DB_XREF=UI-R-CA1-bco-h-05-0-UI.s1 /CLONE=UI-R-CA1-bco-h-05-0-UI /FEA=EST /CNT=5 /TID=Rn.63149.1 /TIER=ConsEnd /STK=5 /UG=Rn.63149 /UG_TITLE=ESTs BF390740 1390314_at BF400220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400220 /DB_XREF=gi:11385231 /DB_XREF=UI-R-CA1-bjc-b-19-0-UI.s1 /CLONE=UI-R-CA1-bjc-b-19-0-UI /FEA=EST /CNT=5 /TID=Rn.46919.1 /TIER=ConsEnd /STK=5 /UG=Rn.46919 /UG_TITLE=ESTs BF400220 1390315_a_at AA875438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875438 /DB_XREF=gi:4231316 /DB_XREF=UI-R-E0-cs-h-12-0-UI.s1 /CLONE=UI-R-E0-cs-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.24931.3 /TIER=ConsEnd /STK=1 /UG=Rn.24931 /UG_TITLE=ESTs AA875438 similar to KIAA0913 protein RGD1309414 361004 XM_001057186 /// XM_002725030 /// XM_002728151 /// XM_341279 0008270 // zinc ion binding // inferred from electronic annotation 1390316_at BF386271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386271 /DB_XREF=gi:11371095 /DB_XREF=UI-R-CA1-bbc-f-02-0-UI.s1 /CLONE=UI-R-CA1-bbc-f-02-0-UI /FEA=EST /CNT=5 /TID=Rn.46015.1 /TIER=ConsEnd /STK=5 /UG=Rn.46015 /UG_TITLE=ESTs BF386271 1390317_at AI227885 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227885 /DB_XREF=gi:3811772 /DB_XREF=EST224580 /CLONE=RBRCN13 /FEA=EST /CNT=5 /TID=Rn.18085.1 /TIER=ConsEnd /STK=5 /UG=Rn.18085 /UG_TITLE=ESTs AI227885 similar to RIKEN cDNA 3110035E14 RGD1561849 500393 NM_001109260 1390318_at BI298067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298067 /DB_XREF=gi:14974347 /DB_XREF=UI-R-CV2-chf-a-04-0-UI.s1 /CLONE=UI-R-CV2-chf-a-04-0-UI /FEA=EST /CNT=5 /TID=Rn.66274.1 /TIER=ConsEnd /STK=5 /UG=Rn.66274 /UG_TITLE=ESTs BI298067 1390319_at BG378301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378301 /DB_XREF=gi:13302773 /DB_XREF=UI-R-CV1-bvq-e-04-0-UI.s1 /CLONE=UI-R-CV1-bvq-e-04-0-UI /FEA=EST /CNT=5 /TID=Rn.76444.1 /TIER=ConsEnd /STK=5 /UG=Rn.76444 /UG_TITLE=ESTs BG378301 Kinesin family member 13A Kif13a 308173 NM_001107462 0007018 // microtubule-based movement // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1390320_at BF415486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415486 /DB_XREF=gi:11403475 /DB_XREF=UI-R-CA1-bjz-e-04-0-UI.s1 /CLONE=UI-R-CA1-bjz-e-04-0-UI /FEA=EST /CNT=5 /TID=Rn.63534.1 /TIER=ConsEnd /STK=5 /UG=Rn.63534 /UG_TITLE=ESTs BF415486 1390321_at BI302848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302848 /DB_XREF=gi:14979128 /DB_XREF=UI-R-DQ0-ciz-n-08-0-UI.s1 /CLONE=UI-R-DQ0-ciz-n-08-0-UI /FEA=EST /CNT=5 /TID=Rn.12467.1 /TIER=ConsEnd /STK=5 /UG=Rn.12467 /UG_TITLE=ESTs BI302848 similar to CG14803-PA RGD1304693 313108 NM_001135780 0005515 // protein binding // not recorded 1390322_at BF409783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409783 /DB_XREF=gi:11397758 /DB_XREF=UI-R-CA1-bls-g-04-0-UI.s1 /CLONE=UI-R-CA1-bls-g-04-0-UI /FEA=EST /CNT=5 /TID=Rn.63259.1 /TIER=ConsEnd /STK=5 /UG=Rn.63259 /UG_TITLE=ESTs BF409783 1390323_at AW527815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527815 /DB_XREF=gi:7170194 /DB_XREF=UI-R-BO1-ajk-a-11-0-UI.s1 /CLONE=UI-R-BO1-ajk-a-11-0-UI /FEA=EST /CNT=5 /TID=Rn.46385.1 /TIER=ConsEnd /STK=5 /UG=Rn.46385 /UG_TITLE=ESTs AW527815 1390324_at BE101809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101809 /DB_XREF=gi:8493907 /DB_XREF=UI-R-BT1-aqh-f-04-0-UI.s1 /CLONE=UI-R-BT1-aqh-f-04-0-UI /FEA=EST /CNT=5 /TID=Rn.61856.1 /TIER=ConsEnd /STK=5 /UG=Rn.61856 /UG_TITLE=ESTs BE101809 1390325_at BI289418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289418 /DB_XREF=gi:14946969 /DB_XREF=UI-R-DK0-cfg-g-04-0-UI.s1 /CLONE=UI-R-DK0-cfg-g-04-0-UI /FEA=EST /CNT=5 /TID=Rn.51774.1 /TIER=ConsEnd /STK=5 /UG=Rn.51774 /UG_TITLE=ESTs BI289418 1390326_at BF564217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564217 /DB_XREF=gi:11673947 /DB_XREF=UI-R-C4-alk-b-02-0-UI.r1 /CLONE=UI-R-C4-alk-b-02-0-UI /FEA=EST /CNT=5 /TID=Rn.47800.1 /TIER=ConsEnd /STK=5 /UG=Rn.47800 /UG_TITLE=ESTs, Weakly similar to RNL4 RAT RIBONUCLEASE 4 PRECURSOR (R.norvegicus) BF564217 angiogenin, ribonuclease A family, member 1 Ang1 305843 NM_001006992 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from sequence or structural similarity /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from sequence or structural similarity /// 0001889 // liver development // inferred from expression pattern /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0001938 // positive regulation of endothelial cell proliferation // inferred from sequence or structural similarity /// 0006651 // diacylglycerol biosynthetic process // not recorded /// 0006651 // diacylglycerol biosynthetic process // inferred from sequence or structural similarity /// 0007202 // activation of phospholipase C activity // not recorded /// 0007202 // activation of phospholipase C activity // inferred from direct assay /// 0007202 // activation of phospholipase C activity // inferred from sequence or structural similarity /// 0008152 // metabolic process // not recorded /// 0009303 // rRNA transcription // not recorded /// 0009303 // rRNA transcription // inferred from sequence or structural similarity /// 0009725 // response to hormone stimulus // not recorded /// 0016477 // cell migration // not recorded /// 0030041 // actin filament polymerization // inferred from sequence or structural similarity /// 0032148 // activation of protein kinase B activity // not recorded /// 0032431 // activation of phospholipase A2 activity // not recorded /// 0032431 // activation of phospholipase A2 activity // inferred from sequence or structural similarity /// 0042327 // positive regulation of phosphorylation // not recorded /// 0048662 // negative regulation of smooth muscle cell proliferation // not recorded /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from sequence or structural similarity /// 0050714 // positive regulation of protein secretion // not recorded /// 0050714 // positive regulation of protein secretion // inferred from sequence or structural similarity 0005576 // extracellular region // not recorded /// 0005605 // basal lamina // not recorded /// 0005605 // basal lamina // inferred from sequence or structural similarity /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from direct assay /// 0030426 // growth cone // not recorded /// 0032311 // angiogenin-PRI complex // not recorded /// 0032311 // angiogenin-PRI complex // inferred from sequence or structural similarity /// 0043025 // neuronal cell body // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0003779 // actin binding // inferred from sequence or structural similarity /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004522 // pancreatic ribonuclease activity // inferred from electronic annotation /// 0004540 // ribonuclease activity // not recorded /// 0004540 // ribonuclease activity // inferred from sequence or structural similarity /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from sequence or structural similarity /// 0005507 // copper ion binding // not recorded /// 0005507 // copper ion binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008201 // heparin binding // not recorded /// 0008201 // heparin binding // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042277 // peptide binding // not recorded 1390327_at BF418351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418351 /DB_XREF=gi:11406340 /DB_XREF=UI-R-CA0-bme-a-11-0-UI.s1 /CLONE=UI-R-CA0-bme-a-11-0-UI /FEA=EST /CNT=5 /TID=Rn.46349.1 /TIER=ConsEnd /STK=5 /UG=Rn.46349 /UG_TITLE=ESTs BF418351 1390328_at AW534202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534202 /DB_XREF=gi:7176616 /DB_XREF=UI-R-C4-alq-d-12-0-UI.s1 /CLONE=UI-R-C4-alq-d-12-0-UI /FEA=EST /CNT=5 /TID=Rn.23426.1 /TIER=ConsEnd /STK=5 /UG=Rn.23426 /UG_TITLE=ESTs, Moderately similar to Y212_HUMAN Putative alpha-mannosidase KIAA0212 (H.sapiens) AW534202 ER degradation enhancer, mannosidase alpha-like 1 Edem1 297504 XM_001075943 /// XM_238366 0030433 // ER-associated protein catabolic process // not recorded 0016020 // membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded 0004559 // alpha-mannosidase activity // not recorded /// 0004571 // mannosyl-oligosaccharide 1,2-alpha-mannosidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051787 // misfolded protein binding // not recorded 1390329_at BF398845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398845 /DB_XREF=gi:11383847 /DB_XREF=UI-R-CA1-biz-m-13-0-UI.s1 /CLONE=UI-R-CA1-biz-m-13-0-UI /FEA=EST /CNT=5 /TID=Rn.60582.1 /TIER=ConsEnd /STK=5 /UG=Rn.60582 /UG_TITLE=ESTs BF398845 1390330_at AI236259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236259 /DB_XREF=gi:4136178 /DB_XREF=EST232821 /CLONE=ROVDD38 /FEA=EST /CNT=5 /TID=Rn.9415.1 /TIER=ConsEnd /STK=5 /UG=Rn.9415 /UG_TITLE=ESTs AI236259 transmembrane protein 60 Tmem60 296761 NM_001191610 /// XM_001063081 /// XM_216066 1390331_at BF391128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391128 /DB_XREF=gi:11375975 /DB_XREF=UI-R-CA1-bcd-e-10-0-UI.s1 /CLONE=UI-R-CA1-bcd-e-10-0-UI /FEA=EST /CNT=5 /TID=Rn.57365.1 /TIER=ConsEnd /STK=5 /UG=Rn.57365 /UG_TITLE=ESTs BF391128 1390332_at BF387670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387670 /DB_XREF=gi:11372494 /DB_XREF=UI-R-CA1-bbt-b-01-0-UI.s1 /CLONE=UI-R-CA1-bbt-b-01-0-UI /FEA=EST /CNT=5 /TID=Rn.63027.1 /TIER=ConsEnd /STK=5 /UG=Rn.63027 /UG_TITLE=ESTs, Highly similar to T42682 hypothetical protein DKFZp434G1221.1 (H.sapiens) BF387670 zinc finger protein 692 Znf692 303164 NM_001126272 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1390333_at AA957050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957050 /DB_XREF=gi:4239523 /DB_XREF=UI-R-E1-ge-a-12-0-UI.s1 /CLONE=UI-R-E1-ge-a-12-0-UI /FEA=EST /CNT=5 /TID=Rn.9173.1 /TIER=ConsEnd /STK=5 /UG=Rn.9173 /UG_TITLE=ESTs, Highly similar to C36491 phosphoprotein phosphatase (R.norvegicus) AA957050 protein phosphatase 4, catalytic subunit Ppp4c 171366 NM_134359 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390334_at BG381537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381537 /DB_XREF=gi:13306009 /DB_XREF=UI-R-CT0-buk-d-12-0-UI.s1 /CLONE=UI-R-CT0-buk-d-12-0-UI /FEA=EST /CNT=5 /TID=Rn.12568.1 /TIER=ConsEnd /STK=5 /UG=Rn.12568 /UG_TITLE=ESTs BG381537 family with sequence similarity 57, member B Fam57b 293493 NM_001106296 0005783 // endoplasmic reticulum // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1390335_at AW252589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252589 /DB_XREF=gi:6596180 /DB_XREF=UI-R-BJ0-add-c-11-0-UI.s1 /CLONE=UI-R-BJ0-add-c-11-0-UI /FEA=EST /CNT=5 /TID=Rn.30126.1 /TIER=ConsEnd /STK=5 /UG=Rn.30126 /UG_TITLE=ESTs, Weakly similar to A48133 pre-mRNA splicing SRp75 (H.sapiens) AW252589 1390336_at BF408325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408325 /DB_XREF=gi:11396300 /DB_XREF=UI-R-BJ2-brb-e-01-0-UI.s1 /CLONE=UI-R-BJ2-brb-e-01-0-UI /FEA=EST /CNT=5 /TID=Rn.2895.1 /TIER=ConsEnd /STK=5 /UG=Rn.2895 /UG_TITLE=ESTs BF408325 similar to Protein C21orf63 homolog precursor RGD1307569 360695 XM_001073261 /// XM_002724692 /// XM_002727861 /// XM_340966 0005529 // sugar binding // inferred from electronic annotation 1390337_at AW526289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526289 /DB_XREF=gi:7168674 /DB_XREF=UI-R-BO1-aja-c-11-0-UI.s1 /CLONE=UI-R-BO1-aja-c-11-0-UI /FEA=EST /CNT=5 /TID=Rn.47579.1 /TIER=ConsEnd /STK=5 /UG=Rn.47579 /UG_TITLE=ESTs AW526289 1390338_at BG373138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373138 /DB_XREF=gi:13269675 /DB_XREF=UI-R-CV1-bsf-h-10-0-UI.s1 /CLONE=UI-R-CV1-bsf-h-10-0-UI /FEA=EST /CNT=5 /TID=Rn.54347.1 /TIER=ConsEnd /STK=5 /UG=Rn.54347 /UG_TITLE=ESTs BG373138 similar to K04F10.2 LOC361646 361646 NM_001134574 1390339_at BE099435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099435 /DB_XREF=gi:8491351 /DB_XREF=UI-R-BJ1-atw-g-11-0-UI.s1 /CLONE=UI-R-BJ1-atw-g-11-0-UI /FEA=EST /CNT=5 /TID=Rn.16802.1 /TIER=ConsEnd /STK=5 /UG=Rn.16802 /UG_TITLE=ESTs BE099435 Ubiquitin specific protease 13 (isopeptidase T-3) Usp13 310306 NM_001107665 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390340_a_at AA899256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899256 /DB_XREF=gi:4231754 /DB_XREF=UI-R-E0-cz-g-10-0-UI.s1 /CLONE=UI-R-E0-cz-g-10-0-UI /FEA=EST /CNT=5 /TID=Rn.22909.1 /TIER=ConsEnd /STK=5 /UG=Rn.22909 /UG_TITLE=ESTs, Moderately similar to IF4G_HUMAN EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA (H.sapiens) AA899256 eukaryotic translation initiation factor 4 gamma, 1 Eif4g1 287986 XM_001060756 /// XM_002724743 /// XM_002727923 /// XM_213569 0006446 // regulation of translational initiation // not recorded /// 0016070 // RNA metabolic process // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0016281 // eukaryotic translation initiation factor 4F complex // inferred from direct assay /// 0016281 // eukaryotic translation initiation factor 4F complex // inferred from mutant phenotype 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008190 // eukaryotic initiation factor 4E binding // inferred from mutant phenotype /// 0008190 // eukaryotic initiation factor 4E binding // inferred from physical interaction 1390341_at BF396709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396709 /DB_XREF=gi:11381689 /DB_XREF=UI-R-BS2-beu-c-05-0-UI.s1 /CLONE=UI-R-BS2-beu-c-05-0-UI /FEA=EST /CNT=5 /TID=Rn.12683.1 /TIER=ConsEnd /STK=5 /UG=Rn.12683 /UG_TITLE=ESTs BF396709 1390342_at AA996517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996517 /DB_XREF=gi:4280284 /DB_XREF=UI-R-C0-he-c-08-0-UI.s1 /CLONE=UI-R-C0-he-c-08-0-UI /FEA=EST /CNT=5 /TID=Rn.41041.1 /TIER=ConsEnd /STK=5 /UG=Rn.41041 /UG_TITLE=ESTs, Moderately similar to JC5630 TCOF1 protein - mouse (M.musculus) AA996517 Treacher Collins-Franceschetti syndrome 1 homolog (human) Tcof1 291571 NM_001106143 0042790 // transcription of nuclear rRNA large RNA polymerase I transcript // not recorded 0005730 // nucleolus // not recorded 0005515 // protein binding // not recorded 1390343_at AA998893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998893 /DB_XREF=gi:4281070 /DB_XREF=UI-R-C0-hp-b-10-0-UI.s1 /CLONE=UI-R-C0-hp-b-10-0-UI /FEA=EST /CNT=5 /TID=Rn.12642.1 /TIER=ConsEnd /STK=5 /UG=Rn.12642 /UG_TITLE=ESTs AA998893 cyclin C Ccnc 114839 NM_001100472 0007049 // cell cycle // traceable author statement /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390344_at BF393562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393562 /DB_XREF=gi:11378424 /DB_XREF=UI-R-CA0-bgd-d-02-0-UI.s1 /CLONE=UI-R-CA0-bgd-d-02-0-UI /FEA=EST /CNT=5 /TID=Rn.54360.1 /TIER=ConsEnd /STK=5 /UG=Rn.54360 /UG_TITLE=ESTs, Weakly similar to JE0343 terf protein - rat (R.norvegicus) BF393562 tripartite motif-containing 11 Trim11 360534 NM_001108276 0009615 // response to virus // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1390345_at BG375523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375523 /DB_XREF=gi:13299995 /DB_XREF=UI-R-CV1-btc-c-09-0-UI.s1 /CLONE=UI-R-CV1-btc-c-09-0-UI /FEA=EST /CNT=5 /TID=Rn.32226.1 /TIER=ConsEnd /STK=5 /UG=Rn.32226 /UG_TITLE=ESTs BG375523 1390346_at AA859181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859181 /DB_XREF=gi:4229505 /DB_XREF=UI-R-E0-cd-f-02-0-UI.s1 /CLONE=UI-R-E0-cd-f-02-0-UI /FEA=EST /CNT=5 /TID=Rn.22294.1 /TIER=ConsEnd /STK=5 /UG=Rn.22294 /UG_TITLE=ESTs AA859181 Similar to hypothetical protein MGC17337 RGD1308165 362516 NM_001108664 0042802 // identical protein binding // not recorded 1390347_at AW535909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535909 /DB_XREF=gi:7178323 /DB_XREF=UI-R-BS0-aoc-g-03-0-UI.s1 /CLONE=UI-R-BS0-aoc-g-03-0-UI /FEA=EST /CNT=5 /TID=Rn.26656.1 /TIER=ConsEnd /STK=5 /UG=Rn.26656 /UG_TITLE=ESTs AW535909 1390348_at BI274054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274054 /DB_XREF=gi:14884612 /DB_XREF=UI-R-CW0-bwc-b-11-0-UI.s1 /CLONE=UI-R-CW0-bwc-b-11-0-UI /FEA=EST /CNT=5 /TID=Rn.8801.1 /TIER=ConsEnd /STK=5 /UG=Rn.8801 /UG_TITLE=ESTs, Highly similar to FOL2 MOUSE FOLATE RECEPTOR BETA PRECURSOR (M.musculus) BI274054 folate receptor 2 (fetal) Folr2 293154 NM_001106283 0004872 // receptor activity // inferred from electronic annotation 1390349_at BF404126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404126 /DB_XREF=gi:11392101 /DB_XREF=UI-R-CA1-biw-f-06-0-UI.s1 /CLONE=UI-R-CA1-biw-f-06-0-UI /FEA=EST /CNT=5 /TID=Rn.61729.1 /TIER=ConsEnd /STK=5 /UG=Rn.61729 /UG_TITLE=ESTs BF404126 1390350_at BE097445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097445 /DB_XREF=gi:8488376 /DB_XREF=UI-R-BO1-apx-f-01-0-UI.s1 /CLONE=UI-R-BO1-apx-f-01-0-UI /FEA=EST /CNT=5 /TID=Rn.40231.1 /TIER=ConsEnd /STK=5 /UG=Rn.40231 /UG_TITLE=ESTs BE097445 small ArfGAP2 Smap2 298500 NM_001100669 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1390351_at AI231225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231225 /DB_XREF=gi:3815105 /DB_XREF=EST227913 /CLONE=REMDH36 /FEA=EST /CNT=5 /TID=Rn.11427.1 /TIER=ConsEnd /STK=5 /UG=Rn.11427 /UG_TITLE=ESTs AI231225 1390352_at AA926371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926371 /DB_XREF=gi:4237562 /DB_XREF=UI-R-A1-eu-h-05-0-UI.s1 /CLONE=UI-R-A1-eu-h-05-0-UI /FEA=EST /CNT=5 /TID=Rn.32746.1 /TIER=ConsEnd /STK=5 /UG=Rn.32746 /UG_TITLE=ESTs, Weakly similar to JC4296 ring finger protein - fruit fly (D.melanogaster) AA926371 polycomb group ring finger 1 Pcgf1 312480 NM_001007000 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390353_at BF409856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409856 /DB_XREF=gi:11397831 /DB_XREF=UI-R-CA1-bjr-e-12-0-UI.s1 /CLONE=UI-R-CA1-bjr-e-12-0-UI /FEA=EST /CNT=5 /TID=Rn.62869.1 /TIER=ConsEnd /STK=5 /UG=Rn.62869 /UG_TITLE=ESTs BF409856 1390354_at BF409793 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409793 /DB_XREF=gi:11397768 /DB_XREF=UI-R-CA1-bls-h-03-0-UI.s1 /CLONE=UI-R-CA1-bls-h-03-0-UI /FEA=EST /CNT=5 /TID=Rn.61559.1 /TIER=ConsEnd /STK=5 /UG=Rn.61559 /UG_TITLE=ESTs BF409793 1390355_at AI575442 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575442 /DB_XREF=gi:4559818 /DB_XREF=UI-R-Y0-vg-d-11-0-UI.s1 /CLONE=UI-R-Y0-vg-d-11-0-UI /FEA=EST /CNT=5 /TID=Rn.38647.1 /TIER=ConsEnd /STK=5 /UG=Rn.38647 /UG_TITLE=ESTs, Weakly similar to B36579 inositol 1,4,5-triphosphate receptor 2 - rat (R.norvegicus) AI575442 ryanodine receptor 1-like Ryr1l 114207 XM_001078539 /// XM_341818 0001666 // response to hypoxia // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006936 // muscle contraction // inferred from electronic annotation /// 0031000 // response to caffeine // inferred from direct assay /// 0051209 // release of sequestered calcium ion into cytosol // inferred from electronic annotation /// 0051209 // release of sequestered calcium ion into cytosol // inferred from direct assay /// 0051480 // cytosolic calcium ion homeostasis // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0030314 // junctional membrane complex // inferred from electronic annotation /// 0030315 // T-tubule // inferred from electronic annotation /// 0031674 // I band // inferred from electronic annotation /// 0033017 // sarcoplasmic reticulum membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005219 // ryanodine-sensitive calcium-release channel activity // inferred from direct assay /// 0005219 // ryanodine-sensitive calcium-release channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1390356_at AW535401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535401 /DB_XREF=gi:7177815 /DB_XREF=UI-R-BS0-aoe-g-04-0-UI.s1 /CLONE=UI-R-BS0-aoe-g-04-0-UI /FEA=EST /CNT=5 /TID=Rn.15945.1 /TIER=ConsEnd /STK=5 /UG=Rn.15945 /UG_TITLE=ESTs AW535401 1390357_at AW525082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525082 /DB_XREF=gi:7167467 /DB_XREF=UI-R-BJ0p-aim-f-03-0-UI.s1 /CLONE=UI-R-BJ0p-aim-f-03-0-UI /FEA=EST /CNT=5 /TID=Rn.15466.1 /TIER=ConsEnd /STK=5 /UG=Rn.15466 /UG_TITLE=ESTs, Weakly similar to ZF94_RAT ZINC FINGER PROTEIN 94 (ZFP-94) (ZINC FINGER PROTEIN Y1) (RLZF-Y) (R.norvegicus) AW525082 zinc finger protein 574 Znf574 308434 NM_001024258 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390358_at BF405996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405996 /DB_XREF=gi:11393971 /DB_XREF=UI-R-CA1-bje-j-07-0-UI.s1 /CLONE=UI-R-CA1-bje-j-07-0-UI /FEA=EST /CNT=5 /TID=Rn.47743.1 /TIER=ConsEnd /STK=5 /UG=Rn.47743 /UG_TITLE=ESTs, Moderately similar to T30256 calcium channel alpha-2-delta-C chain - mouse (M.musculus) BF405996 calcium channel, voltage-dependent, alpha2/delta subunit 3 Cacna2d3 306243 NM_175595 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation 0005891 // voltage-gated calcium channel complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from direct assay /// 0005246 // calcium channel regulator activity // traceable author statement /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390359_at AI231635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231635 /DB_XREF=gi:3815515 /DB_XREF=EST228323 /CLONE=REMDN03 /FEA=EST /CNT=5 /TID=Rn.37785.1 /TIER=ConsEnd /STK=5 /UG=Rn.37785 /UG_TITLE=ESTs AI231635 1390360_a_at BI282944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282944 /DB_XREF=gi:14934211 /DB_XREF=UI-R-CW0s-ccf-b-09-0-UI.s1 /CLONE=UI-R-CW0s-ccf-b-09-0-UI /FEA=EST /CNT=4 /TID=Rn.27181.2 /TIER=ConsEnd /STK=3 /UG=Rn.27181 /UG_TITLE=ESTs, Weakly similar to S64732 scaffold attachment factor B (H.sapiens) BI282944 1390361_at BF411971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411971 /DB_XREF=gi:11399925 /DB_XREF=UI-R-BT1-bmx-c-05-0-UI.s1 /CLONE=UI-R-BT1-bmx-c-05-0-UI /FEA=EST /CNT=5 /TID=Rn.47465.1 /TIER=ConsEnd /STK=5 /UG=Rn.47465 /UG_TITLE=ESTs BF411971 zinc finger protein 213 Znf213 287094 NM_001105764 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390362_at BF394081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394081 /DB_XREF=gi:11378945 /DB_XREF=UI-R-CA0-bgy-h-05-0-UI.s1 /CLONE=UI-R-CA0-bgy-h-05-0-UI /FEA=EST /CNT=5 /TID=Rn.51336.1 /TIER=ConsEnd /STK=5 /UG=Rn.51336 /UG_TITLE=ESTs BF394081 1390363_at AI556913 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556913 /DB_XREF=gi:4489276 /DB_XREF=UI-R-C2p-rp-d-10-0-UI.s1 /CLONE=UI-R-C2p-rp-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.39369.1 /TIER=ConsEnd /STK=5 /UG=Rn.39369 /UG_TITLE=ESTs AI556913 1390364_at AI044316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044316 /DB_XREF=gi:3291219 /DB_XREF=UI-R-C1-jx-d-05-0-UI.s1 /CLONE=UI-R-C1-jx-d-05-0-UI /FEA=EST /CNT=5 /TID=Rn.20637.1 /TIER=ConsEnd /STK=5 /UG=Rn.20637 /UG_TITLE=ESTs AI044316 1390365_at BI296415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296415 /DB_XREF=gi:14960816 /DB_XREF=UI-R-CV2-cgq-h-07-0-UI.s1 /CLONE=UI-R-CV2-cgq-h-07-0-UI /FEA=EST /CNT=5 /TID=Rn.49070.1 /TIER=ConsEnd /STK=5 /UG=Rn.49070 /UG_TITLE=ESTs BI296415 leukocyte receptor cluster (LRC) member 1 Leng1 292535 NM_001106218 0004872 // receptor activity // inferred from electronic annotation 1390366_at BI291884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291884 /DB_XREF=gi:14951842 /DB_XREF=UI-R-DN0-ciu-e-19-0-UI.s1 /CLONE=UI-R-DN0-ciu-e-19-0-UI /FEA=EST /CNT=5 /TID=Rn.66752.1 /TIER=ConsEnd /STK=5 /UG=Rn.66752 /UG_TITLE=ESTs BI291884 protocadherin 24 Pcdh24 291002 XM_001070261 /// XM_214434 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390367_at BF406195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406195 /DB_XREF=gi:11394170 /DB_XREF=UI-R-CA1-bjf-a-14-0-UI.s1 /CLONE=UI-R-CA1-bjf-a-14-0-UI /FEA=EST /CNT=5 /TID=Rn.58056.1 /TIER=ConsEnd /STK=5 /UG=Rn.58056 /UG_TITLE=ESTs, Moderately similar to CALCIUMCALMODULIN-DEPENDENT PROTEIN KINASE TYPE I (R.norvegicus) BF406195 1390368_at AI716535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716535 /DB_XREF=gi:5033788 /DB_XREF=UI-R-Y0-abi-c-04-0-UI.s1 /CLONE=UI-R-Y0-abi-c-04-0-UI /FEA=EST /CNT=5 /TID=Rn.36537.1 /TIER=ConsEnd /STK=5 /UG=Rn.36537 /UG_TITLE=ESTs AI716535 zinc finger homeobox 2 Zfhx2 305888 NM_001098803 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1390369_at BI293026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293026 /DB_XREF=gi:14954125 /DB_XREF=UI-R-DK0-cdj-c-12-0-UI.s1 /CLONE=UI-R-DK0-cdj-c-12-0-UI /FEA=EST /CNT=5 /TID=Rn.52791.1 /TIER=ConsEnd /STK=5 /UG=Rn.52791 /UG_TITLE=ESTs BI293026 1390370_at BF402582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402582 /DB_XREF=gi:11390557 /DB_XREF=UI-R-CA0-bhm-a-12-0-UI.s1 /CLONE=UI-R-CA0-bhm-a-12-0-UI /FEA=EST /CNT=5 /TID=Rn.62290.1 /TIER=ConsEnd /STK=5 /UG=Rn.62290 /UG_TITLE=ESTs BF402582 1390371_at BI296619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296619 /DB_XREF=gi:14961224 /DB_XREF=UI-R-CV2-cgt-d-02-0-UI.s1 /CLONE=UI-R-CV2-cgt-d-02-0-UI /FEA=EST /CNT=5 /TID=Rn.73021.1 /TIER=ConsEnd /STK=5 /UG=Rn.73021 /UG_TITLE=ESTs BI296619 F-box and leucine-rich repeat protein 13-like LOC100359739 100359739 XM_002729272 1390372_at BF521975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF521975 /DB_XREF=gi:11629942 /DB_XREF=UI-R-Y0-acb-b-06-0-UI.r1 /CLONE=UI-R-Y0-acb-b-06-0-UI /FEA=EST /CNT=5 /TID=Rn.41185.1 /TIER=ConsEnd /STK=5 /UG=Rn.41185 /UG_TITLE=ESTs, Weakly similar to JC5399 dual leucine zipper kinase (R.norvegicus) BF521975 1390373_at BE107528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107528 /DB_XREF=gi:8499633 /DB_XREF=UI-R-BS1-ayu-g-06-0-UI.s1 /CLONE=UI-R-BS1-ayu-g-06-0-UI /FEA=EST /CNT=5 /TID=Rn.44899.1 /TIER=ConsEnd /STK=5 /UG=Rn.44899 /UG_TITLE=ESTs BE107528 SMAD family member 5 Smad5 59328 NM_021692 0001503 // ossification // inferred from expression pattern /// 0001657 // ureteric bud development // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001880 // Mullerian duct regression // inferred from mutant phenotype /// 0002051 // osteoblast fate commitment // not recorded /// 0002051 // osteoblast fate commitment // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007281 // germ cell development // not recorded /// 0007281 // germ cell development // inferred from electronic annotation /// 0009880 // embryonic pattern specification // inferred from sequence or structural similarity /// 0030218 // erythrocyte differentiation // not recorded /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030278 // regulation of ossification // non-traceable author statement /// 0030509 // BMP signaling pathway // not recorded /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030509 // BMP signaling pathway // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0060048 // cardiac muscle contraction // not recorded /// 0060048 // cardiac muscle contraction // inferred from electronic annotation /// 0071407 // cellular response to organic cyclic substance // not recorded /// 0071407 // cellular response to organic cyclic substance // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded 1390374_at BM390970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390970 /DB_XREF=gi:18191023 /DB_XREF=UI-R-CN1-cjm-e-13-0-UI.s1 /CLONE=UI-R-CN1-cjm-e-13-0-UI /FEA=EST /CNT=5 /TID=Rn.44953.1 /TIER=ConsEnd /STK=5 /UG=Rn.44953 /UG_TITLE=ESTs BM390970 fibroblast growth factor receptor-like 1 Fgfrl1 360903 NM_199114 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0003179 // heart valve morphogenesis // inferred from electronic annotation /// 0003179 // heart valve morphogenesis // not recorded /// 0007165 // signal transduction // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0016310 // phosphorylation // not recorded /// 0060412 // ventricular septum morphogenesis // inferred from electronic annotation /// 0060412 // ventricular septum morphogenesis // not recorded /// 0060539 // diaphragm development // inferred from electronic annotation /// 0060539 // diaphragm development // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030658 // transport vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005007 // fibroblast growth factor receptor activity // inferred from electronic annotation /// 0005007 // fibroblast growth factor receptor activity // not recorded /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded /// 0017134 // fibroblast growth factor binding // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // not recorded 1390375_at BF414692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414692 /DB_XREF=gi:11402681 /DB_XREF=UI-R-BJ2-bow-a-02-0-UI.s1 /CLONE=UI-R-BJ2-bow-a-02-0-UI /FEA=EST /CNT=5 /TID=Rn.34710.1 /TIER=ConsEnd /STK=5 /UG=Rn.34710 /UG_TITLE=ESTs, Weakly similar to A53414 A-kinase anchor protein 95, AKAP95 - rat (R.norvegicus) BF414692 A kinase (PRKA) anchor protein 8-like Akap8l 299569 NM_001013946 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390376_at BF406135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406135 /DB_XREF=gi:11394110 /DB_XREF=UI-R-CA1-bjf-c-15-0-UI.s1 /CLONE=UI-R-CA1-bjf-c-15-0-UI /FEA=EST /CNT=5 /TID=Rn.57986.1 /TIER=ConsEnd /STK=5 /UG=Rn.57986 /UG_TITLE=ESTs BF406135 1390377_at BF394108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394108 /DB_XREF=gi:11378972 /DB_XREF=UI-R-CA0-bgz-d-07-0-UI.s1 /CLONE=UI-R-CA0-bgz-d-07-0-UI /FEA=EST /CNT=5 /TID=Rn.47195.1 /TIER=ConsEnd /STK=5 /UG=Rn.47195 /UG_TITLE=ESTs BF394108 1390378_at BE107173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107173 /DB_XREF=gi:8499278 /DB_XREF=UI-R-BS1-ayq-f-12-0-UI.s1 /CLONE=UI-R-BS1-ayq-f-12-0-UI /FEA=EST /CNT=5 /TID=Rn.51128.1 /TIER=ConsEnd /STK=5 /UG=Rn.51128 /UG_TITLE=ESTs BE107173 1390379_at BF394528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394528 /DB_XREF=gi:11379394 /DB_XREF=UI-R-CA0-bfw-h-08-0-UI.s1 /CLONE=UI-R-CA0-bfw-h-08-0-UI /FEA=EST /CNT=5 /TID=Rn.61533.1 /TIER=ConsEnd /STK=5 /UG=Rn.61533 /UG_TITLE=ESTs, Weakly similar to ISL2 RAT INSULIN GENE ENHANCER PROTEIN ISL-2 (R.norvegicus) BF394528 LIM domain only 4 Lmo4 362051 NM_001009708 0001843 // neural tube closure // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390380_at BE116633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116633 /DB_XREF=gi:8508738 /DB_XREF=UI-R-BS1-ayd-e-05-0-UI.s1 /CLONE=UI-R-BS1-ayd-e-05-0-UI /FEA=EST /CNT=12 /TID=Rn.19682.1 /TIER=ConsEnd /STK=4 /UG=Rn.19682 /UG_TITLE=ESTs BE116633 similar to Ski protein RGD1565591 313757 XM_001077382 /// XM_233731 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1390381_at BG379358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379358 /DB_XREF=gi:13303825 /DB_XREF=UI-R-CS0-btu-g-12-0-UI.s1 /CLONE=UI-R-CS0-btu-g-12-0-UI /FEA=EST /CNT=10 /TID=Rn.22820.1 /TIER=ConsEnd /STK=4 /UG=Rn.22820 /UG_TITLE=ESTs, Moderately similar to DNA-REPAIR PROTEIN COMPLEMENTING XP-C CELLS HOMOLOG (M.musculus) BG379358 xeroderma pigmentosum, complementation group C Xpc 312560 NM_001107874 0000075 // cell cycle checkpoint // not recorded /// 0000718 // nucleotide-excision repair, DNA damage removal // not recorded /// 0006281 // DNA repair // not recorded /// 0006289 // nucleotide-excision repair // inferred from electronic annotation /// 0006289 // nucleotide-excision repair // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0010224 // response to UV-B // not recorded /// 0031573 // intra-S DNA damage checkpoint // not recorded /// 0042493 // response to drug // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay 0003684 // damaged DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390382_at BF414043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414043 /DB_XREF=gi:11402032 /DB_XREF=UI-R-BJ2-bol-g-02-0-UI.s1 /CLONE=UI-R-BJ2-bol-g-02-0-UI /FEA=EST /CNT=10 /TID=Rn.17258.1 /TIER=ConsEnd /STK=4 /UG=Rn.17258 /UG_TITLE=ESTs, Highly similar to huntingtin interacting protein HYPK (H.sapiens) BF414043 Huntingtin interacting protein K Hypk 311359 XM_001080972 /// XM_230510 1390383_at BI285616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285616 /DB_XREF=gi:14939448 /DB_XREF=UI-R-CW0-bvv-f-09-0-UI.s2 /CLONE=UI-R-CW0-bvv-f-09-0-UI /FEA=EST /CNT=9 /TID=Rn.3182.1 /TIER=ConsEnd /STK=4 /UG=Rn.3182 /UG_TITLE=ESTs, Moderately similar to ADFP MOUSE ADIPOPHILIN (M.musculus) BI285616 adipose differentiation related protein Adfp 298199 NM_001007144 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0015909 // long-chain fatty acid transport // inferred from electronic annotation /// 0015909 // long-chain fatty acid transport // not recorded /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0019915 // lipid storage // not recorded /// 0019915 // lipid storage // traceable author statement /// 0019915 // lipid storage // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005811 // lipid particle // inferred from direct assay /// 0005811 // lipid particle // not recorded /// 0005811 // lipid particle // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1390384_at AA875257 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875257 /DB_XREF=gi:4231135 /DB_XREF=UI-R-E0-cq-d-12-0-UI.s1 /CLONE=UI-R-E0-cq-d-12-0-UI /FEA=EST /CNT=9 /TID=Rn.2850.1 /TIER=ConsEnd /STK=4 /UG=Rn.2850 /UG_TITLE=ESTs AA875257 H2A histone family, member X H2afx 500987 NM_001109291 0000077 // DNA damage checkpoint // not recorded /// 0000724 // double-strand break repair via homologous recombination // not recorded /// 0006281 // DNA repair // not recorded /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0007283 // spermatogenesis // not recorded /// 0007569 // cell aging // not recorded 0000781 // chromosome, telomeric region // not recorded /// 0000785 // chromatin // not recorded /// 0000786 // nucleosome // inferred from electronic annotation /// 0000790 // nuclear chromatin // not recorded /// 0001673 // male germ cell nucleus // not recorded /// 0001741 // XY body // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005657 // replication fork // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0019899 // enzyme binding // not recorded /// 0042393 // histone binding // not recorded 1390385_at AA964674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964674 /DB_XREF=gi:4279548 /DB_XREF=UI-R-E1-gq-a-05-0-UI.s1 /CLONE=UI-R-E1-gq-a-05-0-UI /FEA=EST /CNT=9 /TID=Rn.11883.1 /TIER=ConsEnd /STK=4 /UG=Rn.11883 /UG_TITLE=ESTs AA964674 glucuronic acid epimerase Glce 363073 XM_001073932 /// XM_343404 0006024 // glycosaminoglycan biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0015012 // heparan sulfate proteoglycan biosynthetic process // not recorded /// 0030210 // heparin biosynthetic process // not recorded 0005794 // Golgi apparatus // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0016857 // racemase and epimerase activity, acting on carbohydrates and derivatives // inferred from electronic annotation /// 0016857 // racemase and epimerase activity, acting on carbohydrates and derivatives // not recorded /// 0050379 // UDP-glucuronate 5'-epimerase activity // not recorded 1390386_at BM387008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387008 /DB_XREF=gi:18187061 /DB_XREF=UI-R-CN1-cji-m-01-0-UI.s1 /CLONE=UI-R-CN1-cji-m-01-0-UI /FEA=EST /CNT=9 /TID=Rn.4185.1 /TIER=ConsEnd /STK=4 /UG=Rn.4185 /UG_TITLE=ESTs BM387008 caspase 3 Casp3 25402 NM_012922 0001666 // response to hypoxia // inferred from expression pattern /// 0001782 // B cell homeostasis // not recorded /// 0001836 // release of cytochrome c from mitochondria // not recorded /// 0006309 // DNA fragmentation involved in apoptotic nuclear change // not recorded /// 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from mutant phenotype /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006917 // induction of apoptosis // traceable author statement /// 0006974 // response to DNA damage stimulus // not recorded /// 0007507 // heart development // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0007611 // learning or memory // inferred from mutant phenotype /// 0008152 // metabolic process // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0008625 // induction of apoptosis via death domain receptors // not recorded /// 0008631 // induction of apoptosis by oxidative stress // not recorded /// 0009411 // response to UV // not recorded /// 0009611 // response to wounding // not recorded /// 0009749 // response to glucose stimulus // inferred from direct assay /// 0010033 // response to organic substance // inferred from expression pattern /// 0010038 // response to metal ion // inferred from expression pattern /// 0010165 // response to X-ray // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0021766 // hippocampus development // inferred from expression pattern /// 0023034 // intracellular signaling pathway // inferred from mutant phenotype /// 0030182 // neuron differentiation // inferred from expression pattern /// 0030216 // keratinocyte differentiation // not recorded /// 0030264 // nuclear fragmentation involved in apoptotic nuclear change // not recorded /// 0030889 // negative regulation of B cell proliferation // not recorded /// 0032025 // response to cobalt ion // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0034349 // glial cell apoptosis // inferred from expression pattern /// 0035094 // response to nicotine // inferred from expression pattern /// 0042060 // wound healing // inferred from expression pattern /// 0042326 // negative regulation of phosphorylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from direct assay /// 0043029 // T cell homeostasis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // not recorded /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0045165 // cell fate commitment // not recorded /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // not recorded /// 0045786 // negative regulation of cell cycle // not recorded /// 0046007 // negative regulation of activated T cell proliferation // not recorded /// 0046677 // response to antibiotic // inferred from expression pattern /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051402 // neuron apoptosis // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // inferred from mutant phenotype /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004197 // cysteine-type endopeptidase activity // not recorded /// 0004861 // cyclin-dependent protein kinase inhibitor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008234 // cysteine-type peptidase activity // inferred from direct assay /// 0008234 // cysteine-type peptidase activity // not recorded /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016005 // phospholipase A2 activator activity // inferred from mutant phenotype /// 0016787 // hydrolase activity // inferred from electronic annotation 1390387_at BF396636 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396636 /DB_XREF=gi:11381611 /DB_XREF=UI-R-BS2-bea-d-06-0-UI.s1 /CLONE=UI-R-BS2-bea-d-06-0-UI /FEA=EST /CNT=12 /TID=Rn.7927.1 /TIER=ConsEnd /STK=4 /UG=Rn.7927 /UG_TITLE=ESTs BF396636 SH3 domain containing 19 Sh3d19 295171 XM_001072742 /// XM_002725986 /// XM_002725987 /// XM_002725988 /// XM_002729085 /// XM_002729086 /// XM_002729087 /// XM_215597 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0016044 // cellular membrane organization // not recorded /// 0051044 // positive regulation of membrane protein ectodomain proteolysis // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // not recorded /// 0070064 // proline-rich region binding // not recorded 1390388_at BF283951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283951 /DB_XREF=gi:11215021 /DB_XREF=EST448542 /CLONE=RGIEJ28 /FEA=EST /CNT=11 /TID=Rn.18758.1 /TIER=ConsEnd /STK=4 /UG=Rn.18758 /UG_TITLE=ESTs, Highly similar to FERROCHELATASE PRECURSOR (M.musculus) BF283951 ferrochelatase Fech 361338 NM_001108434 0006779 // porphyrin biosynthetic process // not recorded /// 0006779 // porphyrin biosynthetic process // inferred from electronic annotation /// 0006783 // heme biosynthetic process // inferred from direct assay /// 0006783 // heme biosynthetic process // inferred from electronic annotation /// 0006783 // heme biosynthetic process // not recorded /// 0008203 // cholesterol metabolic process // not recorded /// 0009416 // response to light stimulus // not recorded /// 0009589 // detection of UV // not recorded /// 0010038 // response to metal ion // inferred from expression pattern /// 0010288 // response to lead ion // inferred from expression pattern /// 0010999 // regulation of eIF2 alpha phosphorylation by heme // not recorded /// 0017085 // response to insecticide // inferred from expression pattern /// 0030218 // erythrocyte differentiation // not recorded /// 0034379 // very-low-density lipoprotein particle assembly // not recorded /// 0042168 // heme metabolic process // traceable author statement /// 0042493 // response to drug // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0046501 // protoporphyrinogen IX metabolic process // not recorded /// 0046685 // response to arsenic // inferred from expression pattern /// 0046984 // regulation of hemoglobin biosynthetic process // not recorded /// 0051597 // response to methylmercury // inferred from expression pattern /// 0055072 // iron ion homeostasis // not recorded /// 0070541 // response to platinum ion // inferred from expression pattern /// 0071549 // cellular response to dexamethasone stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // not recorded 0004325 // ferrochelatase activity // inferred from direct assay /// 0004325 // ferrochelatase activity // inferred from electronic annotation /// 0004325 // ferrochelatase activity // not recorded /// 0005506 // iron ion binding // not recorded /// 0005515 // protein binding // not recorded /// 0016829 // lyase activity // inferred from electronic annotation /// 0020037 // heme binding // not recorded /// 0030350 // iron-responsive element binding // not recorded /// 0046906 // tetrapyrrole binding // not recorded 1390389_at BM385936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385936 /DB_XREF=gi:18185989 /DB_XREF=UI-R-DN1-ckf-m-23-0-UI.s1 /CLONE=UI-R-DN1-ckf-m-23-0-UI /FEA=EST /CNT=10 /TID=Rn.49246.1 /TIER=ConsEnd /STK=4 /UG=Rn.49246 /UG_TITLE=ESTs BM385936 1390390_at BM386814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386814 /DB_XREF=gi:18186867 /DB_XREF=UI-R-CN1-cjh-g-18-0-UI.s1 /CLONE=UI-R-CN1-cjh-g-18-0-UI /FEA=EST /CNT=10 /TID=Rn.53537.1 /TIER=ConsEnd /STK=4 /UG=Rn.53537 /UG_TITLE=ESTs, Weakly similar to T43490 hypothetical protein DKFZp434A139.1 (H.sapiens) BM386814 transcription factor 20 Tcf20 366964 NM_001130574 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0030528 // transcription regulator activity // not recorded 1390391_at BF283381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283381 /DB_XREF=gi:11214451 /DB_XREF=EST447972 /CLONE=RGIEB24 /FEA=EST /CNT=9 /TID=Rn.25327.1 /TIER=ConsEnd /STK=4 /UG=Rn.25327 /UG_TITLE=ESTs BF283381 1390392_at BI301527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301527 /DB_XREF=gi:14977802 /DB_XREF=UI-R-DN0-cit-i-08-0-UI.s1 /CLONE=UI-R-DN0-cit-i-08-0-UI /FEA=EST /CNT=9 /TID=Rn.19476.1 /TIER=ConsEnd /STK=4 /UG=Rn.19476 /UG_TITLE=ESTs, Weakly similar to T31511 hypothetical protein Y116A8C.9 - Caenorhabditis elegans (C.elegans) BI301527 transmembrane protein 185B Tmem185b 304731 NM_001191668 /// XM_001053834 /// XM_002724849 /// XM_002727993 /// XM_222559 1390393_at BF388422 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388422 /DB_XREF=gi:11373246 /DB_XREF=UI-R-BS2-bdc-c-09-0-UI.s1 /CLONE=UI-R-BS2-bdc-c-09-0-UI /FEA=EST /CNT=9 /TID=Rn.38809.1 /TIER=ConsEnd /STK=4 /UG=Rn.38809 /UG_TITLE=ESTs BF388422 1390394_at AW251900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251900 /DB_XREF=gi:6595491 /DB_XREF=UI-R-BJ0-adn-c-11-0-UI.s1 /CLONE=UI-R-BJ0-adn-c-11-0-UI /FEA=EST /CNT=8 /TID=Rn.24757.1 /TIER=ConsEnd /STK=4 /UG=Rn.24757 /UG_TITLE=ESTs AW251900 similar to CG3570-PA LOC500034 500034 NM_001109221 1390395_at BF284768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284768 /DB_XREF=gi:11215838 /DB_XREF=EST449359 /CLONE=RGIEW08 /FEA=EST /CNT=8 /TID=Rn.3812.1 /TIER=ConsEnd /STK=4 /UG=Rn.3812 /UG_TITLE=ESTs BF284768 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 Plekha8 500132 NM_001109235 0046836 // glycolipid transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0017089 // glycolipid transporter activity // inferred from electronic annotation /// 0051861 // glycolipid binding // inferred from electronic annotation 1390396_at AI101338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101338 /DB_XREF=gi:3706255 /DB_XREF=EST210627 /CLONE=RBRBL66 /FEA=EST /CNT=8 /TID=Rn.22427.1 /TIER=ConsEnd /STK=4 /UG=Rn.22427 /UG_TITLE=ESTs AI101338 eukaryotic translation initiation factor 4E member 3 Eif4e3 297481 NM_001106612 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation 1390397_at BF413152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413152 /DB_XREF=gi:11401141 /DB_XREF=UI-R-BT1-bnx-c-11-0-UI.s1 /CLONE=UI-R-BT1-bnx-c-11-0-UI /FEA=EST /CNT=8 /TID=Rn.44092.1 /TIER=ConsEnd /STK=4 /UG=Rn.44092 /UG_TITLE=ESTs BF413152 transmembrane protein 90B Tmem90b 362235 NM_001025020 0009607 // response to biotic stimulus // inferred from electronic annotation 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation 1390398_at AI179372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179372 /DB_XREF=gi:4135148 /DB_XREF=EST223069 /CLONE=RSPCG30 /FEA=EST /CNT=8 /TID=Rn.23068.1 /TIER=ConsEnd /STK=4 /UG=Rn.23068 /UG_TITLE=ESTs AI179372 1390399_at BE102391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102391 /DB_XREF=gi:8494490 /DB_XREF=UI-R-BT1-aqm-a-06-0-UI.s1 /CLONE=UI-R-BT1-aqm-a-06-0-UI /FEA=EST /CNT=8 /TID=Rn.48202.1 /TIER=ConsEnd /STK=4 /UG=Rn.48202 /UG_TITLE=ESTs BE102391 cAMP responsive element binding protein-like 2 Crebl2 362453 NM_001015027 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1390400_a_at BM390922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390922 /DB_XREF=gi:18190975 /DB_XREF=UI-R-CN1-cjp-m-15-0-UI.s1 /CLONE=UI-R-CN1-cjp-m-15-0-UI /FEA=EST /CNT=8 /TID=Rn.227.1 /TIER=ConsEnd /STK=4 /UG=Rn.227 /UG_TITLE=ESTs BM390922 1390401_at BF285365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285365 /DB_XREF=gi:11216435 /DB_XREF=EST449956 /CLONE=RGIFF08 /FEA=EST /CNT=8 /TID=Rn.56097.1 /TIER=ConsEnd /STK=4 /UG=Rn.56097 /UG_TITLE=ESTs BF285365 1390402_at AI172431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172431 /DB_XREF=gi:3712471 /DB_XREF=EST218439 /CLONE=RMUBZ49 /FEA=EST /CNT=8 /TID=Rn.4080.1 /TIER=ConsEnd /STK=4 /UG=Rn.4080 /UG_TITLE=ESTs AI172431 1390403_at BE108405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108405 /DB_XREF=gi:8500510 /DB_XREF=UI-R-BS1-ayv-h-06-0-UI.s1 /CLONE=UI-R-BS1-ayv-h-06-0-UI /FEA=EST /CNT=8 /TID=Rn.23416.1 /TIER=ConsEnd /STK=4 /UG=Rn.23416 /UG_TITLE=ESTs BE108405 family with sequence similarity 43, member A Fam43a 288031 NM_001039002 1390404_at BF556962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556962 /DB_XREF=gi:11666692 /DB_XREF=UI-R-A1-ev-e-02-0-UI.r1 /CLONE=UI-R-A1-ev-e-02-0-UI /FEA=EST /CNT=8 /TID=Rn.21475.1 /TIER=ConsEnd /STK=4 /UG=Rn.21475 /UG_TITLE=ESTs, Highly similar to A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair (M.musculus) BF556962 laminin, alpha 2 Lama2 309368 XM_001062273 /// XM_219866 0022011 // myelination in peripheral nervous system // inferred from expression pattern /// 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from expression pattern /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0032224 // positive regulation of synaptic transmission, cholinergic // not recorded /// 0045995 // regulation of embryonic development // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005605 // basal lamina // inferred from direct assay /// 0005605 // basal lamina // not recorded /// 0005606 // laminin-1 complex // inferred from electronic annotation /// 0042383 // sarcolemma // not recorded /// 0043197 // dendritic spine // inferred from direct assay 0005102 // receptor binding // inferred from electronic annotation 1390405_at AA942765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA942765 /DB_XREF=gi:3102681 /DB_XREF=EST198264 /CLONE=RBRAA74 /FEA=EST /CNT=8 /TID=Rn.44984.1 /TIER=ConsEnd /STK=4 /UG=Rn.44984 /UG_TITLE=ESTs AA942765 1390406_at AI232065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232065 /DB_XREF=gi:3815945 /DB_XREF=EST228753 /CLONE=RKIBW44 /FEA=EST /CNT=8 /TID=Rn.17251.1 /TIER=ConsEnd /STK=4 /UG=Rn.17251 /UG_TITLE=ESTs AI232065 Rho GTPase activating protein 18 Arhgap18 293947 NM_001170575 /// XM_001062453 /// XM_215247 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // not recorded 1390407_at AA955196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955196 /DB_XREF=gi:4234279 /DB_XREF=UI-R-A1-du-d-01-0-UI.s1 /CLONE=UI-R-A1-du-d-01-0-UI /FEA=EST /CNT=13 /TID=Rn.21502.1 /TIER=ConsEnd /STK=4 /UG=Rn.21502 /UG_TITLE=ESTs, Moderately similar to T12481 hypothetical protein DKFZp564P0462.1 (H.sapiens) AA955196 claudin domain containing 1 Cldnd1 288182 NM_001006955 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1390408_at BF405032 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405032 /DB_XREF=gi:11393007 /DB_XREF=UI-R-CA1-bio-g-05-0-UI.s1 /CLONE=UI-R-CA1-bio-g-05-0-UI /FEA=EST /CNT=10 /TID=Rn.12002.1 /TIER=ConsEnd /STK=4 /UG=Rn.12002 /UG_TITLE=ESTs BF405032 holocytochrome c synthetase Hccs 317444 NM_001191732 /// XM_001065465 /// XM_228867 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0004408 // holocytochrome-c synthase activity // inferred from electronic annotation 1390409_at BI294742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294742 /DB_XREF=gi:14957492 /DB_XREF=UI-R-DK0-ceb-e-11-0-UI.s1 /CLONE=UI-R-DK0-ceb-e-11-0-UI /FEA=EST /CNT=10 /TID=Rn.17036.1 /TIER=ConsEnd /STK=4 /UG=Rn.17036 /UG_TITLE=ESTs BI294742 family with sequence similarity 160, member B1 Fam160b1 361774 XM_001064355 /// XM_342068 1390410_at AA963369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963369 /DB_XREF=gi:4278293 /DB_XREF=UI-R-E1-ga-h-02-0-UI.s1 /CLONE=UI-R-E1-ga-h-02-0-UI /FEA=EST /CNT=9 /TID=Rn.11455.1 /TIER=ConsEnd /STK=4 /UG=Rn.11455 /UG_TITLE=ESTs AA963369 1390411_at BG378563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378563 /DB_XREF=gi:13303035 /DB_XREF=UI-R-CV1-bvr-a-02-0-UI.s1 /CLONE=UI-R-CV1-bvr-a-02-0-UI /FEA=EST /CNT=9 /TID=Rn.21352.1 /TIER=ConsEnd /STK=4 /UG=Rn.21352 /UG_TITLE=ESTs, Weakly similar to claudin 1 (Rattus norvegicus) (R.norvegicus) BG378563 claudin 19 Cldn19 298487 NM_001008514 0019227 // neuronal action potential propagation // inferred from electronic annotation /// 0019227 // neuronal action potential propagation // not recorded /// 0043297 // apical junction assembly // inferred from electronic annotation /// 0043297 // apical junction assembly // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0005923 // tight junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030054 // cell junction // not recorded /// 0043296 // apical junction complex // not recorded /// 0043296 // apical junction complex // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005198 // structural molecule activity // not recorded 1390412_at AI229664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229664 /DB_XREF=gi:3813551 /DB_XREF=EST226359 /CLONE=REMCK23 /FEA=EST /CNT=8 /TID=Rn.11665.1 /TIER=ConsEnd /STK=4 /UG=Rn.11665 /UG_TITLE=ESTs AI229664 solute carrier family 39 (iron-regulated transporter), member 1 Slc40a1 170840 NM_133315 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006826 // iron ion transport // non-traceable author statement /// 0006826 // iron ion transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005381 // iron ion transmembrane transporter activity // non-traceable author statement /// 0005381 // iron ion transmembrane transporter activity // inferred from electronic annotation 1390413_at AI112629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112629 /DB_XREF=gi:3512578 /DB_XREF=UI-R-Y0-ml-g-04-0-UI.s2 /CLONE=UI-R-Y0-ml-g-04-0-UI /FEA=EST /CNT=8 /TID=Rn.23589.1 /TIER=ConsEnd /STK=4 /UG=Rn.23589 /UG_TITLE=ESTs AI112629 similar to RIKEN cDNA 1700026D08 RGD1310371 308794 NM_001100581 1390414_at BI296515 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296515 /DB_XREF=gi:14961014 /DB_XREF=UI-R-CV2-cgs-b-06-0-UI.s1 /CLONE=UI-R-CV2-cgs-b-06-0-UI /FEA=EST /CNT=8 /TID=Rn.54339.1 /TIER=ConsEnd /STK=4 /UG=Rn.54339 /UG_TITLE=ESTs, Weakly similar to S18878 irlB protein (H.sapiens) BI296515 similar to hypothetical protein RGD1308489 313340 XR_007342 /// XR_086260 1390415_at BM392319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392319 /DB_XREF=gi:18192372 /DB_XREF=UI-R-DO1-ckp-h-02-0-UI.s1 /CLONE=UI-R-DO1-ckp-h-02-0-UI /FEA=EST /CNT=8 /TID=Rn.11751.1 /TIER=ConsEnd /STK=4 /UG=Rn.11751 /UG_TITLE=ESTs BM392319 thyroid hormone receptor interactor 13 Trip13 292206 NM_001011930 0000239 // pachytene // inferred from electronic annotation /// 0000239 // pachytene // not recorded /// 0001556 // oocyte maturation // inferred from electronic annotation /// 0001556 // oocyte maturation // not recorded /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006302 // double-strand break repair // not recorded /// 0007131 // reciprocal meiotic recombination // inferred from electronic annotation /// 0007131 // reciprocal meiotic recombination // not recorded /// 0007141 // male meiosis I // inferred from electronic annotation /// 0007141 // male meiosis I // not recorded /// 0007144 // female meiosis I // inferred from electronic annotation /// 0007144 // female meiosis I // not recorded /// 0007286 // spermatid development // inferred from electronic annotation /// 0007286 // spermatid development // not recorded 0001673 // male germ cell nucleus // inferred from electronic annotation /// 0001673 // male germ cell nucleus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1390416_at H35736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H35736 /DB_XREF=gi:981153 /DB_XREF=EST105798 /CLONE=RPCAT02 /FEA=EST /CNT=8 /TID=Rn.19440.1 /TIER=ConsEnd /STK=4 /UG=Rn.19440 /UG_TITLE=ESTs H35736 solute carrier family 25, member 30 Slc25a30 361074 NM_001013187 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1390417_at AA926160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926160 /DB_XREF=gi:4237351 /DB_XREF=UI-R-A1-ev-e-04-0-UI.s1 /CLONE=UI-R-A1-ev-e-04-0-UI /FEA=EST /CNT=8 /TID=Rn.8178.1 /TIER=ConsEnd /STK=4 /UG=Rn.8178 /UG_TITLE=ESTs AA926160 1390418_at AW251888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251888 /DB_XREF=gi:6595479 /DB_XREF=UI-R-BJ0-adn-b-10-0-UI.s1 /CLONE=UI-R-BJ0-adn-b-10-0-UI /FEA=EST /CNT=8 /TID=Rn.40397.1 /TIER=ConsEnd /STK=4 /UG=Rn.40397 /UG_TITLE=ESTs AW251888 ARP1 actin-related protein 1 homolog B (yeast) Actr1b 316333 NM_001039028 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1390419_a_at AI454905 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454905 /DB_XREF=gi:4296995 /DB_XREF=UI-R-C2p-ql-h-06-0-UI.s1 /CLONE=UI-R-C2p-ql-h-06-0-UI /FEA=EST /CNT=7 /TID=Rn.35146.1 /TIER=ConsEnd /STK=4 /UG=Rn.35146 /UG_TITLE=ESTs, Moderately similar to implantation-associated protein (Rattus norvegicus) (R.norvegicus) AI454905 tumor suppressor candidate 3 Tusc3 290783 NM_001004212 0045454 // cell redox homeostasis // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0008250 // oligosaccharyltransferase complex // not recorded 1390420_at AI577849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577849 /DB_XREF=gi:4562225 /DB_XREF=UI-R-AB0-vw-c-04-0-UI.s1 /CLONE=UI-R-AB0-vw-c-04-0-UI /FEA=EST /CNT=7 /TID=Rn.19382.1 /TIER=ConsEnd /STK=4 /UG=Rn.19382 /UG_TITLE=ESTs, Weakly similar to carboxypeptidase E (Rattus norvegicus) (R.norvegicus) AI577849 carboxypeptidase X (M14 family), member 1 Cpxm1 296156 NM_001106511 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation 0005615 // extracellular space // not recorded 0004180 // carboxypeptidase activity // not recorded /// 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1390421_at AI232524 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232524 /DB_XREF=gi:3816404 /DB_XREF=EST229212 /CLONE=RKICC77 /FEA=EST /CNT=7 /TID=Rn.2129.1 /TIER=ConsEnd /STK=4 /UG=Rn.2129 /UG_TITLE=ESTs AI232524 1390422_at AW920759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920759 /DB_XREF=gi:8086574 /DB_XREF=EST352063 /CLONE=RGIHB91 /FEA=EST /CNT=7 /TID=Rn.28927.1 /TIER=ConsEnd /STK=4 /UG=Rn.28927 /UG_TITLE=ESTs AW920759 PX domain containing serine/threonine kinase Pxk 306203 NM_182821 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0007154 // cell communication // inferred from electronic annotation /// 0032780 // negative regulation of ATPase activity // inferred from electronic annotation /// 0032780 // negative regulation of ATPase activity // not recorded /// 0043271 // negative regulation of ion transport // inferred from electronic annotation /// 0043271 // negative regulation of ion transport // not recorded /// 0050804 // regulation of synaptic transmission // not recorded /// 0050804 // regulation of synaptic transmission // inferred from sequence or structural similarity /// 0050804 // regulation of synaptic transmission // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1390423_at BE104245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104245 /DB_XREF=gi:8496345 /DB_XREF=UI-R-BX0-arm-e-08-0-UI.s1 /CLONE=UI-R-BX0-arm-e-08-0-UI /FEA=EST /CNT=7 /TID=Rn.13538.1 /TIER=ConsEnd /STK=4 /UG=Rn.13538 /UG_TITLE=ESTs, Highly similar to T14792 hypothetical protein DKFZp586G0322.1 (H.sapiens) BE104245 MYC binding protein 2 Mycbp2 290447 NM_001106055 0008045 // motor axon guidance // not recorded /// 0021785 // branchiomotor neuron axon guidance // not recorded /// 0021952 // central nervous system projection neuron axonogenesis // not recorded /// 0030071 // regulation of mitotic metaphase/anaphase transition // inferred from electronic annotation /// 0032880 // regulation of protein localization // not recorded /// 0048667 // cell morphogenesis involved in neuron differentiation // not recorded /// 0051493 // regulation of cytoskeleton organization // not recorded 0005680 // anaphase-promoting complex // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded /// 0030424 // axon // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1390424_at BF285207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285207 /DB_XREF=gi:11216277 /DB_XREF=EST449798 /CLONE=RGIFB78 /FEA=EST /CNT=7 /TID=Rn.23950.1 /TIER=ConsEnd /STK=4 /UG=Rn.23950 /UG_TITLE=ESTs BF285207 1390425_at BF398716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398716 /DB_XREF=gi:11383756 /DB_XREF=UI-R-BS2-bes-e-03-0-UI.s1 /CLONE=UI-R-BS2-bes-e-03-0-UI /FEA=EST /CNT=7 /TID=Rn.12604.1 /TIER=ConsEnd /STK=4 /UG=Rn.12604 /UG_TITLE=ESTs BF398716 1390426_at BF389398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389398 /DB_XREF=gi:11374228 /DB_XREF=UI-R-BS2-bdj-d-03-0-UI.s1 /CLONE=UI-R-BS2-bdj-d-03-0-UI /FEA=EST /CNT=7 /TID=Rn.21221.1 /TIER=ConsEnd /STK=4 /UG=Rn.21221 /UG_TITLE=ESTs, Highly similar to NTC1 RAT NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1 PRECURSOR (R.norvegicus) BF389398 Notch homolog 1, translocation-associated (Drosophila) Notch1 25496 NM_001105721 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001708 // cell fate specification // inferred from electronic annotation /// 0001708 // cell fate specification // not recorded /// 0001837 // epithelial to mesenchymal transition // inferred from electronic annotation /// 0001837 // epithelial to mesenchymal transition // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0002040 // sprouting angiogenesis // inferred from electronic annotation /// 0002040 // sprouting angiogenesis // not recorded /// 0002052 // positive regulation of neuroblast proliferation // inferred from mutant phenotype /// 0003160 // endocardium morphogenesis // inferred from electronic annotation /// 0003160 // endocardium morphogenesis // not recorded /// 0003180 // aortic valve morphogenesis // inferred from electronic annotation /// 0003180 // aortic valve morphogenesis // not recorded /// 0003264 // regulation of cardioblast proliferation // inferred from mutant phenotype /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from mutant phenotype /// 0007221 // positive regulation of transcription of Notch receptor target // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from mutant phenotype /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // not recorded /// 0007386 // compartment pattern formation // inferred from electronic annotation /// 0007386 // compartment pattern formation // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007440 // foregut morphogenesis // inferred from electronic annotation /// 0007440 // foregut morphogenesis // not recorded /// 0007492 // endoderm development // inferred from electronic annotation /// 0007492 // endoderm development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008544 // epidermis development // inferred from electronic annotation /// 0008544 // epidermis development // not recorded /// 0009790 // embryo development // inferred from direct assay /// 0010001 // glial cell differentiation // not recorded /// 0010001 // glial cell differentiation // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010812 // negative regulation of cell-substrate adhesion // not recorded /// 0014807 // regulation of somitogenesis // inferred from electronic annotation /// 0014807 // regulation of somitogenesis // not recorded /// 0021515 // cell differentiation in spinal cord // inferred from expression pattern /// 0021915 // neural tube development // inferred from electronic annotation /// 0021915 // neural tube development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030216 // keratinocyte differentiation // not recorded /// 0030216 // keratinocyte differentiation // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0031960 // response to corticosteroid stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032582 // negative regulation of gene-specific transcription // inferred from electronic annotation /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0042127 // regulation of cell proliferation // inferred from mutant phenotype /// 0042246 // tissue regeneration // inferred from expression pattern /// 0042640 // anagen // inferred from electronic annotation /// 0042640 // anagen // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045603 // positive regulation of endothelial cell differentiation // inferred from mutant phenotype /// 0045618 // positive regulation of keratinocyte differentiation // inferred from electronic annotation /// 0045618 // positive regulation of keratinocyte differentiation // not recorded /// 0045662 // negative regulation of myoblast differentiation // inferred from electronic annotation /// 0045662 // negative regulation of myoblast differentiation // not recorded /// 0045665 // negative regulation of neuron differentiation // inferred from mutant phenotype /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045668 // negative regulation of osteoblast differentiation // inferred from electronic annotation /// 0045668 // negative regulation of osteoblast differentiation // not recorded /// 0045687 // positive regulation of glial cell differentiation // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046533 // negative regulation of photoreceptor cell differentiation // inferred from electronic annotation /// 0046533 // negative regulation of photoreceptor cell differentiation // not recorded /// 0048103 // somatic stem cell division // inferred from electronic annotation /// 0048103 // somatic stem cell division // not recorded /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0048708 // astrocyte differentiation // inferred from direct assay /// 0048709 // oligodendrocyte differentiation // inferred from expression pattern /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // not recorded /// 0050678 // regulation of epithelial cell proliferation // not recorded /// 0050678 // regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050767 // regulation of neurogenesis // inferred from electronic annotation /// 0050767 // regulation of neurogenesis // not recorded /// 0050793 // regulation of developmental process // inferred from electronic annotation /// 0060528 // secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development // inferred from electronic annotation /// 0060528 // secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development // not recorded /// 0060548 // negative regulation of cell death // inferred from electronic annotation /// 0060548 // negative regulation of cell death // not recorded /// 0060740 // prostate gland epithelium morphogenesis // inferred from electronic annotation /// 0060740 // prostate gland epithelium morphogenesis // not recorded /// 0060768 // regulation of epithelial cell proliferation involved in prostate gland development // inferred from electronic annotation /// 0060768 // regulation of epithelial cell proliferation involved in prostate gland development // not recorded 0001669 // acrosomal vesicle // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0031490 // chromatin DNA binding // inferred from electronic annotation /// 0031490 // chromatin DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1390427_at BF397491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397491 /DB_XREF=gi:11382439 /DB_XREF=UI-R-BS2-bel-f-03-0-UI.s1 /CLONE=UI-R-BS2-bel-f-03-0-UI /FEA=EST /CNT=7 /TID=Rn.6213.1 /TIER=ConsEnd /STK=4 /UG=Rn.6213 /UG_TITLE=ESTs BF397491 1390428_at BF555924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555924 /DB_XREF=gi:11665654 /DB_XREF=UI-R-A1-dw-d-12-0-UI.r1 /CLONE=UI-R-A1-dw-d-12-0-UI /FEA=EST /CNT=7 /TID=Rn.15221.1 /TIER=ConsEnd /STK=4 /UG=Rn.15221 /UG_TITLE=ESTs BF555924 1390429_at BF398114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398114 /DB_XREF=gi:11383100 /DB_XREF=UI-R-BS2-bem-e-10-0-UI.s1 /CLONE=UI-R-BS2-bem-e-10-0-UI /FEA=EST /CNT=7 /TID=Rn.20016.1 /TIER=ConsEnd /STK=4 /UG=Rn.20016 /UG_TITLE=ESTs BF398114 1390430_at BF284190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284190 /DB_XREF=gi:11215260 /DB_XREF=EST448781 /CLONE=RGIEM36 /FEA=EST /CNT=7 /TID=Rn.24808.1 /TIER=ConsEnd /STK=4 /UG=Rn.24808 /UG_TITLE=ESTs BF284190 1390431_at AI111559 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111559 /DB_XREF=gi:3511601 /DB_XREF=UI-R-Y0-mk-b-12-0-UI.s1 /CLONE=UI-R-Y0-mk-b-12-0-UI /FEA=EST /CNT=7 /TID=Rn.22062.1 /TIER=ConsEnd /STK=4 /UG=Rn.22062 /UG_TITLE=ESTs AI111559 1390432_at AA997338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997338 /DB_XREF=gi:4280861 /DB_XREF=UI-R-C0-hl-a-04-0-UI.s1 /CLONE=UI-R-C0-hl-a-04-0-UI /FEA=EST /CNT=7 /TID=Rn.12515.1 /TIER=ConsEnd /STK=4 /UG=Rn.12515 /UG_TITLE=ESTs AA997338 transmembrane and coiled-coil domains 3 Tmco3 306607 NM_001135857 0006810 // transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0015299 // solute:hydrogen antiporter activity // inferred from electronic annotation 1390433_at AI102429 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102429 /DB_XREF=gi:4134081 /DB_XREF=EST211718 /CLONE=RBRCD41 /FEA=EST /CNT=7 /TID=Rn.19335.1 /TIER=ConsEnd /STK=4 /UG=Rn.19335 /UG_TITLE=ESTs AI102429 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 Rcbtb1 361050 NM_001108380 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation 1390434_at BM386846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386846 /DB_XREF=gi:18186899 /DB_XREF=UI-R-CN1-cjh-m-16-0-UI.s1 /CLONE=UI-R-CN1-cjh-m-16-0-UI /FEA=EST /CNT=7 /TID=Rn.18545.1 /TIER=ConsEnd /STK=4 /UG=Rn.18545 /UG_TITLE=ESTs, Moderately similar to A Chain A, Crystal Structure Of The Complex Between The N-Terminal Domain Of Tradd And The Traf Domain Of Traf2 {SUB 1-179 (H.sapiens) BM386846 TNFRSF1A-associated via death domain Tradd 246756 NM_001100480 0006915 // apoptosis // traceable author statement /// 0006917 // induction of apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from physical interaction /// 0051798 // positive regulation of hair follicle development // not recorded 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0043235 // receptor complex // not recorded /// 0045121 // membrane raft // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019215 // intermediate filament binding // not recorded /// 0019900 // kinase binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction /// 0042802 // identical protein binding // not recorded /// 0060090 // molecular adaptor activity // not recorded /// 0070513 // death domain binding // not recorded 1390435_at AA996717 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996717 /DB_XREF=gi:4280483 /DB_XREF=UI-R-C0-hf-e-04-0-UI.s1 /CLONE=UI-R-C0-hf-e-04-0-UI /FEA=EST /CNT=7 /TID=Rn.12381.1 /TIER=ConsEnd /STK=4 /UG=Rn.12381 /UG_TITLE=ESTs AA996717 small nucleolar RNA host gene (non-protein coding) 8 Snhg8 361111 XM_001062546 /// XM_341397 1390436_at BI300794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300794 /DB_XREF=gi:14977074 /DB_XREF=UI-R-CV2-cij-g-06-0-UI.s1 /CLONE=UI-R-CV2-cij-g-06-0-UI /FEA=EST /CNT=7 /TID=Rn.22838.2 /TIER=ConsEnd /STK=4 /UG=Rn.22838 /UG_TITLE=ESTs BI300794 1390437_at BE116385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116385 /DB_XREF=gi:8508490 /DB_XREF=UI-R-BS1-ayc-f-05-0-UI.s1 /CLONE=UI-R-BS1-ayc-f-05-0-UI /FEA=EST /CNT=12 /TID=Rn.14619.1 /TIER=ConsEnd /STK=4 /UG=Rn.14619 /UG_TITLE=ESTs BE116385 sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A Sema5a 310207 NM_001107659 0001569 // patterning of blood vessels // not recorded /// 0007165 // signal transduction // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0048754 // branching morphogenesis of a tube // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0008046 // axon guidance receptor activity // not recorded 1390438_at AW526136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526136 /DB_XREF=gi:7168521 /DB_XREF=UI-R-BO1-aiz-f-02-0-UI.s1 /CLONE=UI-R-BO1-aiz-f-02-0-UI /FEA=EST /CNT=11 /TID=Rn.41539.1 /TIER=ConsEnd /STK=4 /UG=Rn.41539 /UG_TITLE=ESTs, Highly similar to HDA5_MOUSE HISTONE DEACETYLASE 5 (HD5) (HISTONE DEACETYLASE MHDA1) (M.musculus) AW526136 histone deacetylase 5 Hdac5 84580 NM_053450 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0002076 // osteoblast development // inferred from electronic annotation /// 0006325 // chromatin organization // traceable author statement /// 0006950 // response to stress // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016575 // histone deacetylation // non-traceable author statement /// 0042220 // response to cocaine // inferred from electronic annotation /// 0042493 // response to drug // inferred from direct assay /// 0045668 // negative regulation of osteoblast differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0048742 // regulation of skeletal muscle fiber development // inferred from electronic annotation /// 0051153 // regulation of striated muscle cell differentiation // inferred from electronic annotation /// 0071445 // cellular response to protein stimulus // inferred from expression pattern 0000118 // histone deacetylase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0016604 // nuclear body // inferred from electronic annotation 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0004407 // histone deacetylase activity // inferred from electronic annotation /// 0004407 // histone deacetylase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1390439_at BG372835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372835 /DB_XREF=gi:13269372 /DB_XREF=UI-R-CV1-bsa-d-03-0-UI.s1 /CLONE=UI-R-CV1-bsa-d-03-0-UI /FEA=EST /CNT=10 /TID=Rn.64132.1 /TIER=ConsEnd /STK=4 /UG=Rn.64132 /UG_TITLE=ESTs, Highly similar to cancer associated surface antigen (H.sapiens) BG372835 estrogen receptor binding site associated, antigen, 9 Ebag9 299864 NM_001009665 0006915 // apoptosis // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // not recorded /// 0005925 // focal adhesion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 1390440_at BG380512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380512 /DB_XREF=gi:13304978 /DB_XREF=UI-R-CT0-bty-b-03-0-UI.s1 /CLONE=UI-R-CT0-bty-b-03-0-UI /FEA=EST /CNT=9 /TID=Rn.25009.1 /TIER=ConsEnd /STK=4 /UG=Rn.25009 /UG_TITLE=ESTs BG380512 1390441_at AW527409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527409 /DB_XREF=gi:7169823 /DB_XREF=UI-R-BO1-ajt-a-09-0-UI.s1 /CLONE=UI-R-BO1-ajt-a-09-0-UI /FEA=EST /CNT=8 /TID=Rn.54776.1 /TIER=ConsEnd /STK=4 /UG=Rn.54776 /UG_TITLE=ESTs, Weakly similar to A57514 RNA helicase HEL117 - rat (R.norvegicus) AW527409 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 Asap1 314961 NM_001044245 0007165 // signal transduction // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation /// 0046847 // filopodium assembly // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008093 // cytoskeletal adaptor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390442_at BF284171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284171 /DB_XREF=gi:11215241 /DB_XREF=EST448762 /CLONE=RGIEL81 /FEA=EST /CNT=8 /TID=Rn.6429.1 /TIER=ConsEnd /STK=4 /UG=Rn.6429 /UG_TITLE=ESTs BF284171 URB2 ribosome biogenesis 2 homolog (S. cerevisiae) Urb2 292087 NM_001135708 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 1390443_at BE105661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105661 /DB_XREF=gi:8497763 /DB_XREF=UI-R-BX0-arx-e-07-0-UI.s1 /CLONE=UI-R-BX0-arx-e-07-0-UI /FEA=EST /CNT=8 /TID=Rn.12252.1 /TIER=ConsEnd /STK=4 /UG=Rn.12252 /UG_TITLE=ESTs BE105661 similar to DNA segment, Chr 16, ERATO Doi 472, expressed RGD1563888 360692 NM_001108312 1390444_at AI044433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044433 /DB_XREF=gi:3290784 /DB_XREF=UI-R-C1-js-d-06-0-UI.s1 /CLONE=UI-R-C1-js-d-06-0-UI /FEA=EST /CNT=8 /TID=Rn.18791.1 /TIER=ConsEnd /STK=4 /UG=Rn.18791 /UG_TITLE=ESTs AI044433 1390445_at BE114154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114154 /DB_XREF=gi:8506259 /DB_XREF=UI-R-BJ1-awj-g-01-0-UI.s1 /CLONE=UI-R-BJ1-awj-g-01-0-UI /FEA=EST /CNT=8 /TID=Rn.50508.1 /TIER=ConsEnd /STK=4 /UG=Rn.50508 /UG_TITLE=ESTs BE114154 similar to mbt domain containing 1 LOC688133 688133 XM_001081166 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1390446_at BI296080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296080 /DB_XREF=gi:14960164 /DB_XREF=UI-R-DK0-cew-b-03-0-UI.s1 /CLONE=UI-R-DK0-cew-b-03-0-UI /FEA=EST /CNT=7 /TID=Rn.38266.1 /TIER=ConsEnd /STK=4 /UG=Rn.38266 /UG_TITLE=ESTs BI296080 1390447_at BI295918 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295918 /DB_XREF=gi:14959844 /DB_XREF=UI-R-DK0-cfc-c-07-0-UI.s1 /CLONE=UI-R-DK0-cfc-c-07-0-UI /FEA=EST /CNT=7 /TID=Rn.25536.1 /TIER=ConsEnd /STK=4 /UG=Rn.25536 /UG_TITLE=ESTs BI295918 syntaxin 3 Stx3 81802 NM_031124 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0006887 // exocytosis // not recorded /// 0006944 // cellular membrane fusion // inferred from direct assay /// 0016081 // synaptic vesicle docking involved in exocytosis // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // traceable author statement /// 0031175 // neuron projection development // inferred from direct assay /// 0034599 // cellular response to oxidative stress // inferred from electronic annotation /// 0034599 // cellular response to oxidative stress // not recorded /// 0046907 // intracellular transport // traceable author statement 0001950 // plasma membrane enriched fraction // inferred from electronic annotation /// 0001950 // plasma membrane enriched fraction // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // traceable author statement /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0030426 // growth cone // inferred from direct assay /// 0031201 // SNARE complex // inferred from direct assay /// 0042581 // specific granule // inferred from electronic annotation /// 0042581 // specific granule // not recorded /// 0042582 // azurophil granule // inferred from electronic annotation /// 0042582 // azurophil granule // not recorded /// 0043005 // neuron projection // inferred from direct assay 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0050544 // arachidonic acid binding // inferred from direct assay 1390448_at AA800699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800699 /DB_XREF=gi:4131530 /DB_XREF=EST190196 /CLONE=RLUAK42 /FEA=EST /CNT=7 /TID=Rn.6621.1 /TIER=ConsEnd /STK=4 /UG=Rn.6621 /UG_TITLE=ESTs, Weakly similar to YN60_YEAST HYPOTHETICAL 32.3 KDA PROTEIN IN KRE1-HXT14 INTERGENIC REGION (S.cerevisiae) AA800699 abhydrolase domain containing 13 Abhd13 306630 NM_001107327 1390449_at BI289132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289132 /DB_XREF=gi:14946391 /DB_XREF=UI-R-DK0-cfe-h-02-0-UI.s1 /CLONE=UI-R-DK0-cfe-h-02-0-UI /FEA=EST /CNT=7 /TID=Rn.32626.1 /TIER=ConsEnd /STK=4 /UG=Rn.32626 /UG_TITLE=ESTs BI289132 1390450_a_at AA945955 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945955 /DB_XREF=gi:3105871 /DB_XREF=EST201454 /CLONE=RLUAZ42 /FEA=EST /CNT=7 /TID=Rn.12119.1 /TIER=ConsEnd /STK=4 /UG=Rn.12119 /UG_TITLE=ESTs, Weakly similar to FMOD RAT FIBROMODULIN PRECURSOR (R.norvegicus) AA945955 osteoglycin Ogn 291015 NM_001106103 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390451_at BM390195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390195 /DB_XREF=gi:18190248 /DB_XREF=UI-R-CN1-cjq-a-21-0-UI.s1 /CLONE=UI-R-CN1-cjq-a-21-0-UI /FEA=EST /CNT=7 /TID=Rn.23455.1 /TIER=ConsEnd /STK=4 /UG=Rn.23455 /UG_TITLE=ESTs BM390195 WD repeat domain 41 Wdr41 361879 NM_001108541 1390452_at AI112258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112258 /DB_XREF=gi:3512207 /DB_XREF=UI-R-Y0-mh-h-12-0-UI.s1 /CLONE=UI-R-Y0-mh-h-12-0-UI /FEA=EST /CNT=7 /TID=Rn.20361.1 /TIER=ConsEnd /STK=4 /UG=Rn.20361 /UG_TITLE=ESTs AI112258 erythrocyte protein band 4.1-like 1 Epb4.1l1 59317 NM_021681 /// NM_172090 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0019898 // extrinsic to membrane // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 1390453_at AI599873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599873 /DB_XREF=gi:4608921 /DB_XREF=EST251576 /CLONE=REMEK13 /FEA=EST /CNT=7 /TID=Rn.18666.1 /TIER=ConsEnd /STK=4 /UG=Rn.18666 /UG_TITLE=ESTs AI599873 1390454_at BI289807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289807 /DB_XREF=gi:14947765 /DB_XREF=UI-R-DK0-cfo-e-01-0-UI.s1 /CLONE=UI-R-DK0-cfo-e-01-0-UI /FEA=EST /CNT=7 /TID=Rn.40254.1 /TIER=ConsEnd /STK=4 /UG=Rn.40254 /UG_TITLE=ESTs, Weakly similar to S44837 K02D10.1 protein - Caenorhabditis elegans (C.elegans) BI289807 4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans) Nipsnap1 360971 NM_001100730 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded 1390455_at AI013474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013474 /DB_XREF=gi:3227530 /DB_XREF=EST208149 /CLONE=RSPBM03 /FEA=EST /CNT=7 /TID=Rn.22943.1 /TIER=ConsEnd /STK=4 /UG=Rn.22943 /UG_TITLE=ESTs, Highly similar to HPS1_HUMAN PROTEIN PHPS1 (H.sapiens) AI013474 abhydrolase domain containing 2 Abhd2 293050 NM_001106275 0009611 // response to wounding // not recorded /// 0030336 // negative regulation of cell migration // not recorded 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1390456_at AW524471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524471 /DB_XREF=gi:7166856 /DB_XREF=UI-R-BO0-ahx-g-10-0-UI.s1 /CLONE=UI-R-BO0-ahx-g-10-0-UI /FEA=EST /CNT=6 /TID=Rn.46564.1 /TIER=ConsEnd /STK=4 /UG=Rn.46564 /UG_TITLE=ESTs AW524471 1390457_at BM385762 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385762 /DB_XREF=gi:18185815 /DB_XREF=UI-R-CN1-clx-l-13-0-UI.s1 /CLONE=UI-R-CN1-clx-l-13-0-UI /FEA=EST /CNT=6 /TID=Rn.45760.1 /TIER=ConsEnd /STK=4 /UG=Rn.45760 /UG_TITLE=ESTs BM385762 1390458_at BG666849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666849 /DB_XREF=gi:13888771 /DB_XREF=DRACNF06 /CLONE=DRACNF06 /FEA=EST /CNT=6 /TID=Rn.23893.1 /TIER=ConsEnd /STK=4 /UG=Rn.23893 /UG_TITLE=ESTs BG666849 rCG23949-like LOC100362458 100362458 XR_086345 /// XR_086664 1390459_at BG670247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670247 /DB_XREF=gi:13892346 /DB_XREF=DRNACB12 /CLONE=DRNACB12 /FEA=EST /CNT=6 /TID=Rn.17961.1 /TIER=ConsEnd /STK=4 /UG=Rn.17961 /UG_TITLE=ESTs BG670247 1390460_at AI407307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407307 /DB_XREF=gi:4250811 /DB_XREF=EST235595 /CLONE=ROVDR08 /FEA=EST /CNT=6 /TID=Rn.17877.1 /TIER=ConsEnd /STK=4 /UG=Rn.17877 /UG_TITLE=ESTs AI407307 1390461_at AI071102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071102 /DB_XREF=gi:3397317 /DB_XREF=UI-R-C2-ms-c-08-0-UI.s1 /CLONE=UI-R-C2-ms-c-08-0-UI /FEA=EST /CNT=6 /TID=Rn.21885.1 /TIER=ConsEnd /STK=4 /UG=Rn.21885 /UG_TITLE=ESTs AI071102 1390462_at BI281732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281732 /DB_XREF=gi:14931778 /DB_XREF=UI-R-CT0s-cav-g-12-0-UI.s1 /CLONE=UI-R-CT0s-cav-g-12-0-UI /FEA=EST /CNT=6 /TID=Rn.19984.1 /TIER=ConsEnd /STK=4 /UG=Rn.19984 /UG_TITLE=ESTs BI281732 GH3 domain containing Ghdc 303542 NM_001191651 /// XM_001081466 /// XM_220981 0005783 // endoplasmic reticulum // not recorded 1390463_at BG378294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378294 /DB_XREF=gi:13302766 /DB_XREF=UI-R-CV1-bvq-d-06-0-UI.s1 /CLONE=UI-R-CV1-bvq-d-06-0-UI /FEA=EST /CNT=6 /TID=Rn.63780.1 /TIER=ConsEnd /STK=4 /UG=Rn.63780 /UG_TITLE=ESTs BG378294 1390464_at BI291381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291381 /DB_XREF=gi:14950871 /DB_XREF=UI-R-CV2-cgp-d-10-0-UI.s1 /CLONE=UI-R-CV2-cgp-d-10-0-UI /FEA=EST /CNT=6 /TID=Rn.19068.1 /TIER=ConsEnd /STK=4 /UG=Rn.19068 /UG_TITLE=ESTs BI291381 FERM domain containing 4B Frmd4b 252858 XM_001077268 /// XM_232212 0001726 // ruffle // not recorded /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390465_at AW534554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534554 /DB_XREF=gi:7176968 /DB_XREF=UI-R-BS0-ans-h-10-0-UI.s1 /CLONE=UI-R-BS0-ans-h-10-0-UI /FEA=EST /CNT=6 /TID=Rn.18673.1 /TIER=ConsEnd /STK=4 /UG=Rn.18673 /UG_TITLE=ESTs, Highly similar to AF135421 1 GDP-mannose pyrophosphorylase B (H.sapiens) AW534554 ring finger protein 123 Rnf123 100190936 NM_001191580 /// XM_002727136 /// XM_002729963 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390466_at AW531623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531623 /DB_XREF=gi:7174037 /DB_XREF=UI-R-C4-aky-a-12-0-UI.s1 /CLONE=UI-R-C4-aky-a-12-0-UI /FEA=EST /CNT=6 /TID=Rn.47783.1 /TIER=ConsEnd /STK=4 /UG=Rn.47783 /UG_TITLE=ESTs AW531623 1390467_at AB026259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB026259 /DB_XREF=gi:4719492 /DB_XREF=AB026259 /FEA=EST /CNT=6 /TID=Rn.55318.1 /TIER=ConsEnd /STK=4 /UG=Rn.55318 /UG_TITLE=ESTs AB026259 1390468_at BF397709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397709 /DB_XREF=gi:11382693 /DB_XREF=UI-R-BS2-bed-g-01-0-UI.s1 /CLONE=UI-R-BS2-bed-g-01-0-UI /FEA=EST /CNT=6 /TID=Rn.32007.1 /TIER=ConsEnd /STK=4 /UG=Rn.32007 /UG_TITLE=ESTs BF397709 neogenin homolog 1 (chicken) Neo1 81735 NM_001191881 /// XM_001074913 /// XM_343402 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007520 // myoblast fusion // not recorded /// 0045449 // regulation of transcription // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // not recorded /// 0045296 // cadherin binding // not recorded 1390469_at BM391488 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391488 /DB_XREF=gi:18191541 /DB_XREF=UI-R-DY0-ckr-a-16-0-UI.s1 /CLONE=UI-R-DY0-ckr-a-16-0-UI /FEA=EST /CNT=6 /TID=Rn.38521.1 /TIER=ConsEnd /STK=4 /UG=Rn.38521 /UG_TITLE=ESTs BM391488 nurim (nuclear envelope membrane protein) Nrm 361791 NM_212508 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005635 // nuclear envelope // inferred from sequence or structural similarity /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1390470_at BE107044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107044 /DB_XREF=gi:8499149 /DB_XREF=UI-R-BS1-ayp-b-07-0-UI.s1 /CLONE=UI-R-BS1-ayp-b-07-0-UI /FEA=EST /CNT=6 /TID=Rn.21407.1 /TIER=ConsEnd /STK=4 /UG=Rn.21407 /UG_TITLE=ESTs BE107044 1390471_at BM383411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383411 /DB_XREF=gi:18183464 /DB_XREF=UI-R-DM1-ckb-d-18-0-UI.s1 /CLONE=UI-R-DM1-ckb-d-18-0-UI /FEA=EST /CNT=6 /TID=Rn.48084.1 /TIER=ConsEnd /STK=4 /UG=Rn.48084 /UG_TITLE=ESTs BM383411 1390472_at AI412627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412627 /DB_XREF=gi:4256131 /DB_XREF=EST240926 /CLONE=RBRDL10 /FEA=EST /CNT=6 /TID=Rn.14016.1 /TIER=ConsEnd /STK=4 /UG=Rn.14016 /UG_TITLE=ESTs AI412627 N-acylethanolamine acid amidase Naaa 497009 NM_001010967 0006629 // lipid metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005764 // lysosome // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation 1390473_at AI407741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407741 /DB_XREF=gi:4251245 /DB_XREF=EST236031 /CLONE=ROVDS49 /FEA=EST /CNT=6 /TID=Rn.25411.1 /TIER=ConsEnd /STK=4 /UG=Rn.25411 /UG_TITLE=ESTs, Weakly similar to JE0276 voltage-gated potassium channel alpha chain Kv9.3 - rat (R.norvegicus) AI407741 potassium voltage-gated channel, subfamily G, member 2 Kcng2 307234 NM_001107372 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1390474_at AA859508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859508 /DB_XREF=gi:4230054 /DB_XREF=UI-R-E0-bv-h-11-0-UI.s1 /CLONE=UI-R-E0-bv-h-11-0-UI /FEA=EST /CNT=6 /TID=Rn.242.1 /TIER=ConsEnd /STK=4 /UG=Rn.242 /UG_TITLE=ESTs AA859508 NIPA-like domain containing 2 Nipal2 362899 NM_001130559 1390475_at AI412632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412632 /DB_XREF=gi:4256136 /DB_XREF=EST240931 /CLONE=RBRDL11 /FEA=EST /CNT=6 /TID=Rn.8497.1 /TIER=ConsEnd /STK=4 /UG=Rn.8497 /UG_TITLE=ESTs AI412632 RNA guanylyltransferase and 5'-phosphatase Rngtt 313131 NM_001107923 0006370 // mRNA capping // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0004484 // mRNA guanylyltransferase activity // inferred from electronic annotation /// 0004651 // polynucleotide 5'-phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1390476_at BE101472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101472 /DB_XREF=gi:8493387 /DB_XREF=UI-R-BJ1-auj-d-04-0-UI.s1 /CLONE=UI-R-BJ1-auj-d-04-0-UI /FEA=EST /CNT=6 /TID=Rn.12677.1 /TIER=ConsEnd /STK=4 /UG=Rn.12677 /UG_TITLE=ESTs BE101472 zinc finger and BTB domain containing 39 Zbtb39 299510 NM_001130537 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390477_at BG374180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374180 /DB_XREF=gi:13298652 /DB_XREF=UI-R-CV1-bsm-d-02-0-UI.s1 /CLONE=UI-R-CV1-bsm-d-02-0-UI /FEA=EST /CNT=6 /TID=Rn.35015.1 /TIER=ConsEnd /STK=4 /UG=Rn.35015 /UG_TITLE=ESTs BG374180 1390478_at BE103926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103926 /DB_XREF=gi:8496026 /DB_XREF=UI-R-BX0-arj-e-05-0-UI.s1 /CLONE=UI-R-BX0-arj-e-05-0-UI /FEA=EST /CNT=6 /TID=Rn.49223.1 /TIER=ConsEnd /STK=4 /UG=Rn.49223 /UG_TITLE=ESTs BE103926 1390479_at AI229000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229000 /DB_XREF=gi:3812887 /DB_XREF=EST225695 /CLONE=RBRDC75 /FEA=EST /CNT=6 /TID=Rn.23479.1 /TIER=ConsEnd /STK=4 /UG=Rn.23479 /UG_TITLE=ESTs, Highly similar to HX1M MOUSE HOMEOBOX PROTEIN HOX-11L2 (M.musculus) AI229000 T-cell leukemia, homeobox 3 Tlx3 497881 XM_001064411 /// XM_573065 0001708 // cell fate specification // not recorded /// 0001708 // cell fate specification // inferred from electronic annotation /// 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0002087 // regulation of respiratory gaseous exchange by neurological system process // inferred from electronic annotation /// 0002087 // regulation of respiratory gaseous exchange by neurological system process // not recorded /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // not recorded /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0048665 // neuron fate specification // inferred from electronic annotation /// 0048665 // neuron fate specification // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390480_at AI704806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI704806 /DB_XREF=gi:4992706 /DB_XREF=UI-R-AA1-aaa-f-01-0-UI.s1 /CLONE=UI-R-AA1-aaa-f-01-0-UI /FEA=EST /CNT=6 /TID=Rn.22664.1 /TIER=ConsEnd /STK=4 /UG=Rn.22664 /UG_TITLE=ESTs AI704806 kinesin family member 13A Kif13a 308173 NM_001107462 0007018 // microtubule-based movement // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1390481_a_at AW531714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531714 /DB_XREF=gi:7174128 /DB_XREF=UI-R-C4-alk-c-02-0-UI.s1 /CLONE=UI-R-C4-alk-c-02-0-UI /FEA=EST /CNT=6 /TID=Rn.18835.1 /TIER=ConsEnd /STK=4 /UG=Rn.18835 /UG_TITLE=ESTs AW531714 ubiquitin-conjugating enzyme E2T (putative) Ube2t 360847 NM_001108344 0035519 // protein K29-linked ubiquitination // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0044314 // protein K27-linked ubiquitination // not recorded /// 0070534 // protein K63-linked ubiquitination // not recorded /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0070979 // protein K11-linked ubiquitination // not recorded /// 0085020 // protein K6-linked ubiquitination // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1390482_at BF285511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285511 /DB_XREF=gi:11216491 /DB_XREF=EST450012 /CLONE=RGIFF47 /FEA=EST /CNT=6 /TID=Rn.45485.1 /TIER=ConsEnd /STK=4 /UG=Rn.45485 /UG_TITLE=ESTs BF285511 1390483_at BF555120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555120 /DB_XREF=gi:11664850 /DB_XREF=UI-R-E0-cp-e-08-0-UI.r1 /CLONE=UI-R-E0-cp-e-08-0-UI /FEA=EST /CNT=6 /TID=Rn.15047.1 /TIER=ConsEnd /STK=4 /UG=Rn.15047 /UG_TITLE=ESTs BF555120 solute carrier family 25, member 29 Slc25a29 314441 NM_001010958 0006810 // transport // inferred from electronic annotation /// 0006844 // acyl carnitine transport // not recorded /// 0006844 // acyl carnitine transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055085 // transmembrane transport // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0015227 // acyl carnitine transporter activity // inferred from electronic annotation /// 0015227 // acyl carnitine transporter activity // not recorded 1390484_at AI176750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176750 /DB_XREF=gi:3727388 /DB_XREF=EST220344 /CLONE=ROVBW36 /FEA=EST /CNT=6 /TID=Rn.13085.1 /TIER=ConsEnd /STK=4 /UG=Rn.13085 /UG_TITLE=ESTs AI176750 Mitochondrial ribosomal protein L12 Mrpl12 303746 NM_001029900 0006390 // transcription from mitochondrial promoter // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005762 // mitochondrial large ribosomal subunit // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390485_at BI290680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290680 /DB_XREF=gi:14949479 /DB_XREF=UI-R-DK0-cfy-b-04-0-UI.s1 /CLONE=UI-R-DK0-cfy-b-04-0-UI /FEA=EST /CNT=6 /TID=Rn.21494.1 /TIER=ConsEnd /STK=4 /UG=Rn.21494 /UG_TITLE=ESTs BI290680 membrane-associated ring finger (C3HC4) 5 March5 294079 NM_001106372 0008270 // zinc ion binding // inferred from electronic annotation 1390486_at AI231505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231505 /DB_XREF=gi:3815385 /DB_XREF=EST228193 /CLONE=REMDK96 /FEA=EST /CNT=7 /TID=Rn.19321.1 /TIER=ConsEnd /STK=4 /UG=Rn.19321 /UG_TITLE=ESTs, Moderately similar to UBIQUITIN CARBOXYL-TERMINAL HYDROLASE TRE-2 (H.sapiens) AI231505 ubiquitin specific peptidase 32 Usp32 303394 NM_001107032 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0005794 // Golgi apparatus // not recorded 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1390487_at AW531732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531732 /DB_XREF=gi:7174146 /DB_XREF=UI-R-C4-alk-d-12-0-UI.s1 /CLONE=UI-R-C4-alk-d-12-0-UI /FEA=EST /CNT=7 /TID=Rn.22735.1 /TIER=ConsEnd /STK=4 /UG=Rn.22735 /UG_TITLE=ESTs AW531732 1390488_a_at AI176077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176077 /DB_XREF=gi:3726715 /DB_XREF=EST219655 /CLONE=ROVBK28 /FEA=EST /CNT=1 /TID=Rn.13142.2 /TIER=ConsEnd /STK=1 /UG=Rn.13142 /UG_TITLE=ESTs AI176077 serine/threonine kinase 38 Stk38 361813 NM_001015025 0006464 // protein modification process // not recorded /// 0006464 // protein modification process // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0043407 // negative regulation of MAP kinase activity // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0070688 // MLL5-L complex // inferred from electronic annotation /// 0070688 // MLL5-L complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from electronic annotation /// 0031435 // mitogen-activated protein kinase kinase kinase binding // not recorded 1390489_at BE108860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108860 /DB_XREF=gi:8500965 /DB_XREF=UI-R-BS1-ayz-c-03-0-UI.s1 /CLONE=UI-R-BS1-ayz-c-03-0-UI /FEA=EST /CNT=6 /TID=Rn.15186.1 /TIER=ConsEnd /STK=4 /UG=Rn.15186 /UG_TITLE=ESTs BE108860 1390490_at AI501092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501092 /DB_XREF=gi:4398943 /DB_XREF=UI-R-C2p-rw-d-08-0-UI.s1 /CLONE=UI-R-C2p-rw-d-08-0-UI /FEA=EST /CNT=6 /TID=Rn.26793.1 /TIER=ConsEnd /STK=4 /UG=Rn.26793 /UG_TITLE=ESTs, Moderately similar to I58377 LTG19 (H.sapiens) AI501092 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1 Mllt1 301119 NM_001106876 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1390491_at BM390772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390772 /DB_XREF=gi:18190825 /DB_XREF=UI-R-CN1-cjr-n-21-0-UI.s1 /CLONE=UI-R-CN1-cjr-n-21-0-UI /FEA=EST /CNT=6 /TID=Rn.43155.1 /TIER=ConsEnd /STK=4 /UG=Rn.43155 /UG_TITLE=ESTs, Highly similar to T46490 hypothetical protein DKFZp434K046.1 (H.sapiens) BM390772 coenzyme Q9 homolog (S. cerevisiae) Coq9 498909 NM_001035257 0006744 // ubiquinone biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1390492_a_at BM391750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391750 /DB_XREF=gi:18191803 /DB_XREF=UI-R-DZ0-cks-i-08-0-UI.s1 /CLONE=UI-R-DZ0-cks-i-08-0-UI /FEA=EST /CNT=6 /TID=Rn.9343.1 /TIER=ConsEnd /STK=4 /UG=Rn.9343 /UG_TITLE=ESTs BM391750 ubiquitin specific peptidase 40 Usp40 316599 NM_001134885 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1390493_at AI556256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556256 /DB_XREF=gi:4488619 /DB_XREF=UI-R-C2p-rf-d-08-0-UI.s1 /CLONE=UI-R-C2p-rf-d-08-0-UI /FEA=EST /CNT=6 /TID=Rn.22773.1 /TIER=ConsEnd /STK=4 /UG=Rn.22773 /UG_TITLE=ESTs AI556256 1390494_at AI177484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177484 /DB_XREF=gi:4134996 /DB_XREF=EST221116 /CLONE=RPLCA53 /FEA=EST /CNT=6 /TID=Rn.40272.1 /TIER=ConsEnd /STK=4 /UG=Rn.40272 /UG_TITLE=ESTs AI177484 ribosomal protein S24 Rps24 81776 NM_031112 0006364 // rRNA processing // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // non-traceable author statement /// 0006414 // translational elongation // not recorded /// 0034101 // erythrocyte homeostasis // not recorded /// 0042274 // ribosomal small subunit biogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // non-traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // not recorded /// 0015935 // small ribosomal subunit // inferred from sequence or structural similarity /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003743 // translation initiation factor activity // non-traceable author statement /// 0031369 // translation initiation factor binding // inferred from physical interaction 1390495_at BI294144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294144 /DB_XREF=gi:14956321 /DB_XREF=UI-R-DK0-cej-h-08-0-UI.s1 /CLONE=UI-R-DK0-cej-h-08-0-UI /FEA=EST /CNT=6 /TID=Rn.40976.1 /TIER=ConsEnd /STK=4 /UG=Rn.40976 /UG_TITLE=ESTs BI294144 1390496_at AA964675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964675 /DB_XREF=gi:4279549 /DB_XREF=UI-R-E1-gq-a-06-0-UI.s1 /CLONE=UI-R-E1-gq-a-06-0-UI /FEA=EST /CNT=1 /TID=Rn.11884.3 /TIER=ConsEnd /STK=0 /UG=Rn.11884 /UG_TITLE=ESTs AA964675 Extracellular leucine-rich repeat and fibronectin type III domain containing 2 Elfn2 315117 XR_085885 /// XR_086301 0005634 // nucleus // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 1390497_at AI175594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175594 /DB_XREF=gi:3726232 /DB_XREF=EST219150 /CLONE=ROVBC40 /FEA=EST /CNT=6 /TID=Rn.20866.1 /TIER=ConsEnd /STK=4 /UG=Rn.20866 /UG_TITLE=ESTs AI175594 1390498_at AI230554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230554 /DB_XREF=gi:3814426 /DB_XREF=EST227234 /CLONE=REMCX79 /FEA=EST /CNT=6 /TID=Rn.23623.1 /TIER=ConsEnd /STK=4 /UG=Rn.23623 /UG_TITLE=ESTs AI230554 1390499_at BG380393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380393 /DB_XREF=gi:13304865 /DB_XREF=UI-R-CT0-btw-f-09-0-UI.s1 /CLONE=UI-R-CT0-btw-f-09-0-UI /FEA=EST /CNT=6 /TID=Rn.18275.1 /TIER=ConsEnd /STK=4 /UG=Rn.18275 /UG_TITLE=ESTs BG380393 1390500_at BG375508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375508 /DB_XREF=gi:13299980 /DB_XREF=UI-R-CV1-btc-b-04-0-UI.s1 /CLONE=UI-R-CV1-btc-b-04-0-UI /FEA=EST /CNT=6 /TID=Rn.32786.2 /TIER=ConsEnd /STK=4 /UG=Rn.32786 /UG_TITLE=ESTs BG375508 aftiphilin Aftph 305544 XM_001055784 /// XM_223651 0005829 // cytosol // not recorded /// 0030121 // AP-1 adaptor complex // not recorded 0030276 // clathrin binding // not recorded 1390501_at BE101157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101157 /DB_XREF=gi:8493067 /DB_XREF=UI-R-BJ1-auh-g-04-0-UI.s1 /CLONE=UI-R-BJ1-auh-g-04-0-UI /FEA=EST /CNT=6 /TID=Rn.2948.1 /TIER=ConsEnd /STK=4 /UG=Rn.2948 /UG_TITLE=ESTs BE101157 1390502_at BF388757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388757 /DB_XREF=gi:11373581 /DB_XREF=UI-R-BS2-bde-b-12-0-UI.s1 /CLONE=UI-R-BS2-bde-b-12-0-UI /FEA=EST /CNT=6 /TID=Rn.63893.1 /TIER=ConsEnd /STK=4 /UG=Rn.63893 /UG_TITLE=ESTs BF388757 similar to RIKEN cDNA 1700025G04 gene RGD1309104 289084 NM_001105959 1390503_at BI301268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301268 /DB_XREF=gi:14977548 /DB_XREF=UI-R-DK0-cek-g-02-0-UI.s2 /CLONE=UI-R-DK0-cek-g-02-0-UI /FEA=EST /CNT=6 /TID=Rn.38844.1 /TIER=ConsEnd /STK=4 /UG=Rn.38844 /UG_TITLE=ESTs BI301268 1390504_at AW524470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524470 /DB_XREF=gi:7166855 /DB_XREF=UI-R-BO0-ahx-g-09-0-UI.s1 /CLONE=UI-R-BO0-ahx-g-09-0-UI /FEA=EST /CNT=5 /TID=Rn.45222.1 /TIER=ConsEnd /STK=4 /UG=Rn.45222 /UG_TITLE=ESTs, Moderately similar to 2211333A peripheral membrane protein p230 (H.sapiens) AW524470 1390505_a_at BF419854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419854 /DB_XREF=gi:11407843 /DB_XREF=UI-R-BJ2-bph-a-06-0-UI.s1 /CLONE=UI-R-BJ2-bph-a-06-0-UI /FEA=EST /CNT=5 /TID=Rn.37664.1 /TIER=ConsEnd /STK=4 /UG=Rn.37664 /UG_TITLE=ESTs BF419854 leucine rich repeat and fibronectin type III domain containing 4 Lrfn4 688721 NM_001109508 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1390506_at BF396678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396678 /DB_XREF=gi:11381658 /DB_XREF=UI-R-BS2-bea-h-03-0-UI.s1 /CLONE=UI-R-BS2-bea-h-03-0-UI /FEA=EST /CNT=5 /TID=Rn.21218.1 /TIER=ConsEnd /STK=4 /UG=Rn.21218 /UG_TITLE=ESTs, Highly similar to Ppar binding protein; TRAP 220 (Mus musculus) (M.musculus) BF396678 mediator complex subunit 1 Med1 497991 NM_001134361 0001701 // in utero embryonic development // not recorded /// 0001889 // liver development // not recorded /// 0001892 // embryonic placenta development // not recorded /// 0006260 // DNA replication // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006590 // thyroid hormone generation // not recorded /// 0006702 // androgen biosynthetic process // not recorded /// 0007275 // multicellular organismal development // not recorded /// 0007420 // brain development // not recorded /// 0007507 // heart development // not recorded /// 0007595 // lactation // not recorded /// 0009887 // organ morphogenesis // not recorded /// 0030518 // steroid hormone receptor signaling pathway // not recorded /// 0030521 // androgen receptor signaling pathway // not recorded /// 0033601 // positive regulation of mammary gland epithelial cell proliferation // not recorded /// 0035050 // embryonic heart tube development // not recorded /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0035162 // embryonic hemopoiesis // not recorded /// 0043010 // camera-type eye development // not recorded /// 0045444 // fat cell differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060744 // mammary gland branching involved in thelarche // not recorded /// 0060745 // mammary gland branching involved in pregnancy // not recorded /// 0060750 // epithelial cell proliferation involved in mammary gland duct elongation // not recorded 0005634 // nucleus // not recorded /// 0016592 // mediator complex // inferred from electronic annotation /// 0016592 // mediator complex // not recorded 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003712 // transcription cofactor activity // not recorded /// 0003713 // transcription coactivator activity // not recorded /// 0004872 // receptor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation /// 0016455 // RNA polymerase II transcription mediator activity // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016922 // ligand-dependent nuclear receptor binding // not recorded /// 0030331 // estrogen receptor binding // not recorded /// 0035257 // nuclear hormone receptor binding // not recorded /// 0042809 // vitamin D receptor binding // not recorded /// 0042974 // retinoic acid receptor binding // not recorded /// 0042975 // peroxisome proliferator activated receptor binding // not recorded /// 0046966 // thyroid hormone receptor binding // not recorded 1390507_at BI296097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296097 /DB_XREF=gi:14960197 /DB_XREF=UI-R-DK0-cew-c-09-0-UI.s1 /CLONE=UI-R-DK0-cew-c-09-0-UI /FEA=EST /CNT=5 /TID=Rn.16103.1 /TIER=ConsEnd /STK=4 /UG=Rn.16103 /UG_TITLE=ESTs, Weakly similar to Exonuclease (Caenorhabditis elegans) (C.elegans) BI296097 interferon stimulated exonuclease gene 20 Isg20 293052 NM_001008510 0000738 // DNA catabolic process, exonucleolytic // inferred from electronic annotation /// 0000738 // DNA catabolic process, exonucleolytic // not recorded /// 0006401 // RNA catabolic process // inferred from electronic annotation /// 0006401 // RNA catabolic process // not recorded /// 0009615 // response to virus // inferred from electronic annotation /// 0009615 // response to virus // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0016605 // PML body // inferred from electronic annotation /// 0016605 // PML body // not recorded 0000175 // 3'-5'-exoribonuclease activity // inferred from electronic annotation /// 0000175 // 3'-5'-exoribonuclease activity // not recorded /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0008310 // single-stranded DNA specific 3'-5' exodeoxyribonuclease activity // inferred from electronic annotation /// 0008310 // single-stranded DNA specific 3'-5' exodeoxyribonuclease activity // not recorded 1390508_at BI284393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284393 /DB_XREF=gi:14937028 /DB_XREF=UI-R-CX0s-cco-f-03-0-UI.s1 /CLONE=UI-R-CX0s-cco-f-03-0-UI /FEA=EST /CNT=5 /TID=Rn.1589.1 /TIER=ConsEnd /STK=4 /UG=Rn.1589 /UG_TITLE=ESTs BI284393 1390509_a_at BI294860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294860 /DB_XREF=gi:14957726 /DB_XREF=UI-R-DK0-ced-a-03-0-UI.s1 /CLONE=UI-R-DK0-ced-a-03-0-UI /FEA=EST /CNT=5 /TID=Rn.8504.1 /TIER=ConsEnd /STK=4 /UG=Rn.8504 /UG_TITLE=ESTs BI294860 mitochondrial ribosomal protein L51 Mrpl51 297601 NM_001106621 0006412 // translation // not recorded 0005739 // mitochondrion // not recorded /// 0005761 // mitochondrial ribosome // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // not recorded 1390510_at BI294706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294706 /DB_XREF=gi:14957421 /DB_XREF=UI-R-DK0-ceb-b-05-0-UI.s1 /CLONE=UI-R-DK0-ceb-b-05-0-UI /FEA=EST /CNT=5 /TID=Rn.17885.1 /TIER=ConsEnd /STK=4 /UG=Rn.17885 /UG_TITLE=ESTs BI294706 membrane-spanning 4-domains, subfamily A, member 6B Ms4a6b 293749 NM_001006975 0016021 // integral to membrane // inferred from electronic annotation 1390511_at BI285801 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285801 /DB_XREF=gi:14939815 /DB_XREF=UI-R-CX0s-ccv-a-08-0-UI.s1 /CLONE=UI-R-CX0s-ccv-a-08-0-UI /FEA=EST /CNT=5 /TID=Rn.78602.1 /TIER=ConsEnd /STK=4 /UG=Rn.78602 /UG_TITLE=ESTs BI285801 1390512_at AI170376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170376 /DB_XREF=gi:3710416 /DB_XREF=EST216302 /CLONE=RLUCH54 /FEA=EST /CNT=5 /TID=Rn.22738.1 /TIER=ConsEnd /STK=4 /UG=Rn.22738 /UG_TITLE=ESTs AI170376 1390513_at BI291604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291604 /DB_XREF=gi:14951304 /DB_XREF=UI-R-DN0-ciu-d-07-0-UI.s1 /CLONE=UI-R-DN0-ciu-d-07-0-UI /FEA=EST /CNT=5 /TID=Rn.37549.1 /TIER=ConsEnd /STK=4 /UG=Rn.37549 /UG_TITLE=ESTs BI291604 similar to ras homolog gene family, member f LOC687609 687609 XM_001079372 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005525 // GTP binding // inferred from electronic annotation 1390514_at BI295160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295160 /DB_XREF=gi:14958327 /DB_XREF=UI-R-DK0-ceg-e-04-0-UI.s1 /CLONE=UI-R-DK0-ceg-e-04-0-UI /FEA=EST /CNT=5 /TID=Rn.19041.1 /TIER=ConsEnd /STK=4 /UG=Rn.19041 /UG_TITLE=ESTs BI295160 NEDD4 binding protein 2-like 2 N4bp2l2 288416 NM_001005533 0001701 // in utero embryonic development // not recorded /// 0001824 // blastocyst development // not recorded /// 0001906 // cell killing // inferred from electronic annotation 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1390515_at AA998383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998383 /DB_XREF=gi:4289475 /DB_XREF=UI-R-C0-hz-g-04-0-UI.s1 /CLONE=UI-R-C0-hz-g-04-0-UI /FEA=EST /CNT=5 /TID=Rn.13339.1 /TIER=ConsEnd /STK=4 /UG=Rn.13339 /UG_TITLE=ESTs AA998383 1390516_at BF401649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401649 /DB_XREF=gi:11389624 /DB_XREF=UI-R-CA0-bgn-a-11-0-UI.s1 /CLONE=UI-R-CA0-bgn-a-11-0-UI /FEA=EST /CNT=5 /TID=Rn.64168.1 /TIER=ConsEnd /STK=4 /UG=Rn.64168 /UG_TITLE=ESTs BF401649 1390517_at BM392260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392260 /DB_XREF=gi:18192313 /DB_XREF=UI-R-DO1-ckp-l-09-0-UI.s1 /CLONE=UI-R-DO1-ckp-l-09-0-UI /FEA=EST /CNT=5 /TID=Rn.12308.1 /TIER=ConsEnd /STK=4 /UG=Rn.12308 /UG_TITLE=ESTs BM392260 1390518_at AW915157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915157 /DB_XREF=gi:8080844 /DB_XREF=EST346461 /CLONE=RGICL36 /FEA=EST /CNT=5 /TID=Rn.7073.1 /TIER=ConsEnd /STK=4 /UG=Rn.7073 /UG_TITLE=ESTs AW915157 EMI domain containing 1 Emid1 685462 NM_001109467 0005578 // proteinaceous extracellular matrix // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // not recorded 0005515 // protein binding // not recorded 1390519_at BM387032 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387032 /DB_XREF=gi:18187085 /DB_XREF=UI-R-CN1-cji-a-06-0-UI.s1 /CLONE=UI-R-CN1-cji-a-06-0-UI /FEA=EST /CNT=5 /TID=Rn.33949.1 /TIER=ConsEnd /STK=4 /UG=Rn.33949 /UG_TITLE=ESTs BM387032 glioma tumor suppressor candidate region gene 1 Gltscr1 292622 NM_001106226 0005515 // protein binding // not recorded 1390520_at AI180165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180165 /DB_XREF=gi:3730803 /DB_XREF=EST223904 /CLONE=RSPCR36 /FEA=EST /CNT=5 /TID=Rn.15867.1 /TIER=ConsEnd /STK=4 /UG=Rn.15867 /UG_TITLE=ESTs, Highly similar to DnaJ (Hsp40) homolog, subfamily B, member 3; heat shock protein, DNAJ-like 3 (Mus musculus) (M.musculus) AI180165 DnaJ (Hsp40) homolog, subfamily B, member 3 Dnajb3 680216 NM_001109396 0031072 // heat shock protein binding // inferred from electronic annotation 1390521_at AI227943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227943 /DB_XREF=gi:3811830 /DB_XREF=EST224638 /CLONE=RBRCN89 /FEA=EST /CNT=5 /TID=Rn.37128.1 /TIER=ConsEnd /STK=4 /UG=Rn.37128 /UG_TITLE=ESTs AI227943 1390522_at BI278720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278720 /DB_XREF=gi:14925847 /DB_XREF=UI-R-CZ0-bzb-a-09-0-UI.s1 /CLONE=UI-R-CZ0-bzb-a-09-0-UI /FEA=EST /CNT=5 /TID=Rn.43974.1 /TIER=ConsEnd /STK=4 /UG=Rn.43974 /UG_TITLE=ESTs BI278720 lysine (K)-specific demethylase 2A Kdm2a 361700 NM_001108515 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390523_at BG373402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373402 /DB_XREF=gi:13269939 /DB_XREF=UI-R-CV1-bry-d-03-0-UI.s1 /CLONE=UI-R-CV1-bry-d-03-0-UI /FEA=EST /CNT=5 /TID=Rn.24008.1 /TIER=ConsEnd /STK=4 /UG=Rn.24008 /UG_TITLE=ESTs BG373402 1390524_at BM392295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392295 /DB_XREF=gi:18192348 /DB_XREF=UI-R-DO1-ckp-b-12-0-UI.s1 /CLONE=UI-R-DO1-ckp-b-12-0-UI /FEA=EST /CNT=5 /TID=Rn.64560.1 /TIER=ConsEnd /STK=4 /UG=Rn.64560 /UG_TITLE=ESTs, Weakly similar to neurodegeneration-associated protein 1 (R.norvegicus) BM392295 ring finger protein, LIM domain interacting Rlim 317241 NM_001024892 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0060816 // random inactivation of X chromosome // inferred from electronic annotation /// 0060816 // random inactivation of X chromosome // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390525_a_at BI284420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284420 /DB_XREF=gi:14937083 /DB_XREF=UI-R-CX0s-cco-h-08-0-UI.s1 /CLONE=UI-R-CX0s-cco-h-08-0-UI /FEA=EST /CNT=5 /TID=Rn.12735.1 /TIER=ConsEnd /STK=4 /UG=Rn.12735 /UG_TITLE=ESTs BI284420 stimulated by retinoic acid gene 6 Stra6 363071 NM_001029924 0006810 // transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0004872 // receptor activity // inferred from electronic annotation 1390526_at BI289484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289484 /DB_XREF=gi:14947102 /DB_XREF=UI-R-DK0-cfh-f-03-0-UI.s1 /CLONE=UI-R-DK0-cfh-f-03-0-UI /FEA=EST /CNT=5 /TID=Rn.17603.1 /TIER=ConsEnd /STK=4 /UG=Rn.17603 /UG_TITLE=ESTs BI289484 kelch-like 9 (Drosophila) Klhl9 313348 NM_001107944 0000910 // cytokinesis // not recorded /// 0016567 // protein ubiquitination // not recorded 0030496 // midbody // not recorded /// 0031463 // Cul3-RING ubiquitin ligase complex // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1390527_at BE099470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099470 /DB_XREF=gi:8491311 /DB_XREF=UI-R-BJ1-atw-d-07-0-UI.s1 /CLONE=UI-R-BJ1-atw-d-07-0-UI /FEA=EST /CNT=5 /TID=Rn.9087.1 /TIER=ConsEnd /STK=4 /UG=Rn.9087 /UG_TITLE=ESTs BE099470 RGD1562114 RGD1562114 500795 NM_001109283 0005737 // cytoplasm // not recorded /// 0044421 // extracellular region part // not recorded 1390528_at AW251953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251953 /DB_XREF=gi:6595544 /DB_XREF=UI-R-BJ0-adn-h-12-0-UI.s1 /CLONE=UI-R-BJ0-adn-h-12-0-UI /FEA=EST /CNT=5 /TID=Rn.44708.1 /TIER=ConsEnd /STK=4 /UG=Rn.44708 /UG_TITLE=ESTs AW251953 1390529_at AI412355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412355 /DB_XREF=gi:4255859 /DB_XREF=EST240653 /CLONE=RBRDV05 /FEA=EST /CNT=5 /TID=Rn.20096.1 /TIER=ConsEnd /STK=4 /UG=Rn.20096 /UG_TITLE=ESTs AI412355 CD83 molecule Cd83 361226 NM_001108410 0014070 // response to organic cyclic substance // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // not recorded /// 0032713 // negative regulation of interleukin-4 production // inferred from electronic annotation /// 0032713 // negative regulation of interleukin-4 production // not recorded /// 0032733 // positive regulation of interleukin-10 production // inferred from electronic annotation /// 0032733 // positive regulation of interleukin-10 production // not recorded /// 0032743 // positive regulation of interleukin-2 production // inferred from electronic annotation /// 0032743 // positive regulation of interleukin-2 production // not recorded /// 0043372 // positive regulation of CD4-positive, alpha beta T cell differentiation // inferred from electronic annotation /// 0043372 // positive regulation of CD4-positive, alpha beta T cell differentiation // not recorded 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded 1390530_at AI169239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169239 /DB_XREF=gi:3705547 /DB_XREF=EST215074 /CLONE=RKIBP19 /FEA=EST /CNT=5 /TID=Rn.15403.1 /TIER=ConsEnd /STK=4 /UG=Rn.15403 /UG_TITLE=ESTs AI169239 1390531_at BE098021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098021 /DB_XREF=gi:8488915 /DB_XREF=UI-R-C4-amc-d-10-0-UI.s1 /CLONE=UI-R-C4-amc-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.47450.1 /TIER=ConsEnd /STK=4 /UG=Rn.47450 /UG_TITLE=ESTs BE098021 peroxisomal proliferator-activated receptor A interacting complex 285 Pric285 296474 XM_001057758 /// XM_002726306 /// XM_002729259 /// XM_230961 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004540 // ribonuclease activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1390532_at AI013778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013778 /DB_XREF=gi:3227834 /DB_XREF=EST208453 /CLONE=RSPBS72 /FEA=EST /CNT=5 /TID=Rn.12277.1 /TIER=ConsEnd /STK=4 /UG=Rn.12277 /UG_TITLE=ESTs AI013778 1390533_at BE112894 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112894 /DB_XREF=gi:8504999 /DB_XREF=UI-R-BJ1-awa-a-12-0-UI.s1 /CLONE=UI-R-BJ1-awa-a-12-0-UI /FEA=EST /CNT=5 /TID=Rn.51378.1 /TIER=ConsEnd /STK=4 /UG=Rn.51378 /UG_TITLE=ESTs, Moderately similar to T43486 hypothetical protein DKFZp434N1272.1 (H.sapiens) BE112894 similar to kinesin-like motor protein C20orf23 LOC691920 691920 XM_001080099 0007018 // microtubule-based movement // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1390534_at BG374727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374727 /DB_XREF=gi:13299199 /DB_XREF=UI-R-CV1-bsq-f-09-0-UI.s1 /CLONE=UI-R-CV1-bsq-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.8034.1 /TIER=ConsEnd /STK=4 /UG=Rn.8034 /UG_TITLE=ESTs BG374727 structural maintenance of chromosomes 5 Smc5 293967 NM_001106357 0005694 // chromosome // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation 1390535_at BE098745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098745 /DB_XREF=gi:8490614 /DB_XREF=UI-R-BJ1-atd-d-09-0-UI.s1 /CLONE=UI-R-BJ1-atd-d-09-0-UI /FEA=EST /CNT=5 /TID=Rn.49819.1 /TIER=ConsEnd /STK=4 /UG=Rn.49819 /UG_TITLE=ESTs BE098745 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 Ctdp1 291414 NM_001106131 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008420 // CTD phosphatase activity // not recorded 1390536_at BF551311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551311 /DB_XREF=gi:11661041 /DB_XREF=UI-R-C0-il-b-08-0-UI.r1 /CLONE=UI-R-C0-il-b-08-0-UI /FEA=EST /CNT=5 /TID=Rn.18139.1 /TIER=ConsEnd /STK=4 /UG=Rn.18139 /UG_TITLE=ESTs BF551311 1390537_at BG380364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380364 /DB_XREF=gi:13304836 /DB_XREF=UI-R-CT0-btw-c-07-0-UI.s1 /CLONE=UI-R-CT0-btw-c-07-0-UI /FEA=EST /CNT=5 /TID=Rn.42043.1 /TIER=ConsEnd /STK=4 /UG=Rn.42043 /UG_TITLE=ESTs BG380364 solute carrier family 25 (mitochondrial carrier), member 18 Slc25a18 681896 NM_001044280 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation 1390538_at BF414192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414192 /DB_XREF=gi:11402181 /DB_XREF=UI-R-BJ2-bon-e-04-0-UI.s1 /CLONE=UI-R-BJ2-bon-e-04-0-UI /FEA=EST /CNT=5 /TID=Rn.34156.1 /TIER=ConsEnd /STK=4 /UG=Rn.34156 /UG_TITLE=ESTs BF414192 1390539_at BF285569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285569 /DB_XREF=gi:11216639 /DB_XREF=EST450160 /CLONE=RGIFH49 /FEA=EST /CNT=5 /TID=Rn.13736.1 /TIER=ConsEnd /STK=4 /UG=Rn.13736 /UG_TITLE=ESTs BF285569 1390540_at BF400717 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400717 /DB_XREF=gi:11388692 /DB_XREF=UI-R-CA0-bhe-f-08-0-UI.s1 /CLONE=UI-R-CA0-bhe-f-08-0-UI /FEA=EST /CNT=5 /TID=Rn.50326.1 /TIER=ConsEnd /STK=4 /UG=Rn.50326 /UG_TITLE=ESTs BF400717 1390541_at BI291932 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291932 /DB_XREF=gi:14951937 /DB_XREF=UI-R-DN0-ciu-o-19-0-UI.s1 /CLONE=UI-R-DN0-ciu-o-19-0-UI /FEA=EST /CNT=5 /TID=Rn.24615.1 /TIER=ConsEnd /STK=4 /UG=Rn.24615 /UG_TITLE=ESTs BI291932 Usher syndrome 1C homolog (human) Ush1c 308596 NM_212521 0000086 // G2/M transition of mitotic cell cycle // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0030046 // parallel actin filament bundle assembly // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0042491 // auditory receptor cell differentiation // not recorded /// 0045494 // photoreceptor cell maintenance // not recorded /// 0050885 // neuromuscular process controlling balance // not recorded /// 0050953 // sensory perception of light stimulus // not recorded /// 0050957 // equilibrioception // not recorded /// 0051017 // actin filament bundle assembly // not recorded 0001750 // photoreceptor outer segment // inferred from direct assay /// 0001750 // photoreceptor outer segment // not recorded /// 0001917 // photoreceptor inner segment // inferred from direct assay /// 0001917 // photoreceptor inner segment // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0032420 // stereocilium // not recorded /// 0045177 // apical part of cell // not recorded /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1390542_at BE111757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111757 /DB_XREF=gi:8503862 /DB_XREF=UI-R-BJ1-avx-d-12-0-UI.s1 /CLONE=UI-R-BJ1-avx-d-12-0-UI /FEA=EST /CNT=5 /TID=Rn.15172.1 /TIER=ConsEnd /STK=4 /UG=Rn.15172 /UG_TITLE=ESTs BE111757 Rad51 homolog c (S. cerevisiae) Rad51c 497976 NM_001129777 0006259 // DNA metabolic process // inferred from electronic annotation /// 0007066 // female meiosis sister chromatid cohesion // inferred from electronic annotation /// 0007066 // female meiosis sister chromatid cohesion // not recorded /// 0007131 // reciprocal meiotic recombination // inferred from electronic annotation /// 0007131 // reciprocal meiotic recombination // not recorded /// 0007141 // male meiosis I // inferred from electronic annotation /// 0007141 // male meiosis I // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // inferred from electronic annotation /// 0008821 // crossover junction endodeoxyribonuclease activity // inferred from electronic annotation /// 0008821 // crossover junction endodeoxyribonuclease activity // not recorded 1390543_at BF396416 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396416 /DB_XREF=gi:11381388 /DB_XREF=UI-R-BS2-bdx-h-04-0-UI.s1 /CLONE=UI-R-BS2-bdx-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.8770.1 /TIER=ConsEnd /STK=4 /UG=Rn.8770 /UG_TITLE=ESTs BF396416 1390544_at BF388507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388507 /DB_XREF=gi:11373331 /DB_XREF=UI-R-CA1-bda-c-12-0-UI.s1 /CLONE=UI-R-CA1-bda-c-12-0-UI /FEA=EST /CNT=5 /TID=Rn.34639.1 /TIER=ConsEnd /STK=4 /UG=Rn.34639 /UG_TITLE=ESTs BF388507 1390545_at AI178155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178155 /DB_XREF=gi:3728793 /DB_XREF=EST221820 /CLONE=RPLCM90 /FEA=EST /CNT=5 /TID=Rn.29182.1 /TIER=ConsEnd /STK=4 /UG=Rn.29182 /UG_TITLE=ESTs AI178155 1390546_at BI289684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289684 /DB_XREF=gi:14947519 /DB_XREF=UI-R-DK0-cfi-h-08-0-UI.s1 /CLONE=UI-R-DK0-cfi-h-08-0-UI /FEA=EST /CNT=5 /TID=Rn.15292.1 /TIER=ConsEnd /STK=4 /UG=Rn.15292 /UG_TITLE=ESTs BI289684 1390547_at BG375792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375792 /DB_XREF=gi:13300264 /DB_XREF=UI-R-CS0-btf-e-03-0-UI.s1 /CLONE=UI-R-CS0-btf-e-03-0-UI /FEA=EST /CNT=5 /TID=Rn.12266.1 /TIER=ConsEnd /STK=4 /UG=Rn.12266 /UG_TITLE=ESTs BG375792 1390548_at BI295738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295738 /DB_XREF=gi:14959486 /DB_XREF=UI-R-DK0-cfa-a-07-0-UI.s1 /CLONE=UI-R-DK0-cfa-a-07-0-UI /FEA=EST /CNT=5 /TID=Rn.60788.1 /TIER=ConsEnd /STK=4 /UG=Rn.60788 /UG_TITLE=ESTs BI295738 1390549_at AA859796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859796 /DB_XREF=gi:4230337 /DB_XREF=UI-R-E0-bu-g-10-0-UI.s1 /CLONE=UI-R-E0-bu-g-10-0-UI /FEA=EST /CNT=5 /TID=Rn.4393.1 /TIER=ConsEnd /STK=4 /UG=Rn.4393 /UG_TITLE=ESTs, Weakly similar to S61982 probable membrane protein YOL002c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AA859796 adiponectin receptor 2 Adipor2 312670 NM_001037979 0007165 // signal transduction // not recorded /// 0007507 // heart development // inferred from expression pattern /// 0007565 // female pregnancy // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0046326 // positive regulation of glucose import // inferred from mutant phenotype 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1390550_at BF403636 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403636 /DB_XREF=gi:11391611 /DB_XREF=UI-R-CA1-bjd-p-12-0-UI.s1 /CLONE=UI-R-CA1-bjd-p-12-0-UI /FEA=EST /CNT=5 /TID=Rn.64434.1 /TIER=ConsEnd /STK=4 /UG=Rn.64434 /UG_TITLE=ESTs BF403636 EFR3 homolog A (S. cerevisiae) Efr3a 362923 NM_001130564 0005622 // intracellular // not recorded /// 0005886 // plasma membrane // not recorded 0005488 // binding // inferred from electronic annotation 1390551_at AI072285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072285 /DB_XREF=gi:3398479 /DB_XREF=UI-R-C2-ne-f-05-0-UI.s1 /CLONE=UI-R-C2-ne-f-05-0-UI /FEA=EST /CNT=5 /TID=Rn.20115.1 /TIER=ConsEnd /STK=4 /UG=Rn.20115 /UG_TITLE=ESTs AI072285 1390552_at AA859553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859553 /DB_XREF=gi:4230099 /DB_XREF=UI-R-E0-bv-a-03-0-UI.s1 /CLONE=UI-R-E0-bv-a-03-0-UI /FEA=EST /CNT=5 /TID=Rn.32126.1 /TIER=ConsEnd /STK=4 /UG=Rn.32126 /UG_TITLE=ESTs, Weakly similar to activin receptor interacting protein 1 (Rattus norvegicus) (R.norvegicus) AA859553 membrane associated guanylate kinase, WW and PDZ domain containing 1 Magi1 500261 NM_001030045 0005737 // cytoplasm // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1390553_at BE104167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104167 /DB_XREF=gi:8496267 /DB_XREF=UI-R-BX0-arl-e-08-0-UI.s1 /CLONE=UI-R-BX0-arl-e-08-0-UI /FEA=EST /CNT=5 /TID=Rn.27127.1 /TIER=ConsEnd /STK=4 /UG=Rn.27127 /UG_TITLE=ESTs BE104167 transmembrane protein 194B Tmem194b 503257 NM_001134642 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1390554_at AA818377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818377 /DB_XREF=gi:4228177 /DB_XREF=UI-R-A0-at-f-07-0-UI.s1 /CLONE=UI-R-A0-at-f-07-0-UI /FEA=EST /CNT=5 /TID=Rn.34063.1 /TIER=ConsEnd /STK=4 /UG=Rn.34063 /UG_TITLE=ESTs AA818377 zinc finger protein 385B Zfp385b 311137 NM_001107736 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390555_at AW530876 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530876 /DB_XREF=gi:7173290 /DB_XREF=UI-R-BT1-aks-e-02-0-UI.s1 /CLONE=UI-R-BT1-aks-e-02-0-UI /FEA=EST /CNT=5 /TID=Rn.47568.1 /TIER=ConsEnd /STK=4 /UG=Rn.47568 /UG_TITLE=ESTs AW530876 suppressor of cytokine signaling 5 Socs5 500616 NM_001109274 0007173 // epidermal growth factor receptor signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0045627 // positive regulation of T-helper 1 cell differentiation // not recorded /// 0045629 // negative regulation of T-helper 2 cell differentiation // not recorded 0005154 // epidermal growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390556_at BF408801 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408801 /DB_XREF=gi:11396776 /DB_XREF=UI-R-BT1-bne-e-10-0-UI.s1 /CLONE=UI-R-BT1-bne-e-10-0-UI /FEA=EST /CNT=5 /TID=Rn.18441.1 /TIER=ConsEnd /STK=4 /UG=Rn.18441 /UG_TITLE=ESTs BF408801 1390557_at BF394809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394809 /DB_XREF=gi:11379767 /DB_XREF=UI-R-CA0-bfz-c-01-0-UI.s1 /CLONE=UI-R-CA0-bfz-c-01-0-UI /FEA=EST /CNT=5 /TID=Rn.21437.1 /TIER=ConsEnd /STK=4 /UG=Rn.21437 /UG_TITLE=ESTs BF394809 grancalcin Gca 295647 NM_001106483 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1390558_at AI502229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502229 /DB_XREF=gi:4400080 /DB_XREF=UI-R-C0-jb-e-05-0-UI.s1 /CLONE=UI-R-C0-jb-e-05-0-UI /FEA=EST /CNT=5 /TID=Rn.34252.1 /TIER=ConsEnd /STK=4 /UG=Rn.34252 /UG_TITLE=ESTs AI502229 staufen, RNA binding protein, homolog 2 (Drosophila) Stau2 171500 NM_001007149 /// NM_001007150 /// NM_134466 0006810 // transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation 1390559_at AI144863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144863 /DB_XREF=gi:3666662 /DB_XREF=UI-R-BT0-pm-g-07-0-UI.s1 /CLONE=UI-R-BT0-pm-g-07-0-UI /FEA=EST /CNT=5 /TID=Rn.25054.1 /TIER=ConsEnd /STK=4 /UG=Rn.25054 /UG_TITLE=ESTs AI144863 1390560_at AW434242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434242 /DB_XREF=gi:6965549 /DB_XREF=UI-R-BJ0p-aft-h-08-0-UI.s1 /CLONE=UI-R-BJ0p-aft-h-08-0-UI /FEA=EST /CNT=5 /TID=Rn.45520.1 /TIER=ConsEnd /STK=4 /UG=Rn.45520 /UG_TITLE=ESTs AW434242 helicase, POLQ-like Helq 360912 NM_001014134 /// XM_001060858 /// XM_341186 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation 1390561_at BF282191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282191 /DB_XREF=gi:11213261 /DB_XREF=EST446782 /CLONE=RGIDF44 /FEA=EST /CNT=5 /TID=Rn.18736.1 /TIER=ConsEnd /STK=4 /UG=Rn.18736 /UG_TITLE=ESTs BF282191 1390562_s_at BE102350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102350 /DB_XREF=gi:8494449 /DB_XREF=UI-R-BT1-aql-e-07-0-UI.s1 /CLONE=UI-R-BT1-aql-e-07-0-UI /FEA=EST /CNT=5 /TID=Rn.6745.1 /TIER=ConsEnd /STK=4 /UG=Rn.6745 /UG_TITLE=ESTs BE102350 1390563_at BE096678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096678 /DB_XREF=gi:8487568 /DB_XREF=UI-R-BU0-api-e-10-0-UI.s1 /CLONE=UI-R-BU0-api-e-10-0-UI /FEA=EST /CNT=5 /TID=Rn.38406.1 /TIER=ConsEnd /STK=4 /UG=Rn.38406 /UG_TITLE=ESTs BE096678 ATP-binding cassette, sub-family A (ABC1), member 3 Abca3 302973 XM_001054650 /// XM_002724654 /// XM_220219 0006810 // transport // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from direct assay /// 0042599 // lamellar body // inferred from direct assay /// 0042599 // lamellar body // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation 1390564_at BF406037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406037 /DB_XREF=gi:11394012 /DB_XREF=UI-R-CA1-bje-b-12-0-UI.s1 /CLONE=UI-R-CA1-bje-b-12-0-UI /FEA=EST /CNT=5 /TID=Rn.61628.1 /TIER=ConsEnd /STK=4 /UG=Rn.61628 /UG_TITLE=ESTs BF406037 1390565_at BF391086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391086 /DB_XREF=gi:11375933 /DB_XREF=UI-R-CA1-bcd-a-05-0-UI.s1 /CLONE=UI-R-CA1-bcd-a-05-0-UI /FEA=EST /CNT=5 /TID=Rn.63760.1 /TIER=ConsEnd /STK=4 /UG=Rn.63760 /UG_TITLE=ESTs BF391086 potassium channel tetramerisation domain containing 16 Kctd16 291618 NM_001172155 /// XM_001069498 /// XM_225971 0006813 // potassium ion transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1390566_a_at BI301453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301453 /DB_XREF=gi:14977733 /DB_XREF=UI-R-DN0-cit-c-07-0-UI.s1 /CLONE=UI-R-DN0-cit-c-07-0-UI /FEA=EST /CNT=5 /TID=Rn.24682.1 /TIER=ConsEnd /STK=4 /UG=Rn.24682 /UG_TITLE=ESTs, Highly similar to CREATINE KINASE, UBIQUITOUS MITOCHONDRIAL PRECURSOR (R.norvegicus) BI301453 creatine kinase, mitochondrial 1 Ckmt1 29593 NM_001012738 0006600 // creatine metabolic process // not recorded /// 0046314 // phosphocreatine biosynthetic process // traceable author statement 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004111 // creatine kinase activity // traceable author statement /// 0004111 // creatine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation 1390567_at AI712547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712547 /DB_XREF=gi:5016347 /DB_XREF=UI-R-AF1-aap-g-06-0-UI.s1 /CLONE=UI-R-AF1-aap-g-06-0-UI /FEA=EST /CNT=5 /TID=Rn.39163.1 /TIER=ConsEnd /STK=4 /UG=Rn.39163 /UG_TITLE=ESTs, Weakly similar to PTP9 DROME PROTEIN-TYROSINE PHOSPHATASE 99A PRECURSOR (D.melanogaster) AI712547 THAP domain containing 11 Thap11 307806 NM_001107422 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1390568_at BF551027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551027 /DB_XREF=gi:11660757 /DB_XREF=UI-R-C0-hh-g-09-0-UI.r2 /CLONE=UI-R-C0-hh-g-09-0-UI /FEA=EST /CNT=5 /TID=Rn.6713.1 /TIER=ConsEnd /STK=4 /UG=Rn.6713 /UG_TITLE=ESTs BF551027 1390569_at AI231438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231438 /DB_XREF=gi:3815318 /DB_XREF=EST228126 /CLONE=REMDK16 /FEA=EST /CNT=5 /TID=Rn.15548.1 /TIER=ConsEnd /STK=4 /UG=Rn.15548 /UG_TITLE=ESTs AI231438 carnosine dipeptidase 1 (metallopeptidase M20 family) Cndp1 307212 NM_001007687 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390570_at BI299811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299811 /DB_XREF=gi:14976091 /DB_XREF=UI-R-CV2-chx-e-07-0-UI.s1 /CLONE=UI-R-CV2-chx-e-07-0-UI /FEA=EST /CNT=5 /TID=Rn.41537.1 /TIER=ConsEnd /STK=4 /UG=Rn.41537 /UG_TITLE=ESTs BI299811 CREB regulated transcription coactivator 3 Crtc3 365297 XM_001066604 /// XM_344915 1390571_at AI170948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170948 /DB_XREF=gi:3710988 /DB_XREF=EST216890 /CLONE=RMUBD86 /FEA=EST /CNT=5 /TID=Rn.23364.1 /TIER=ConsEnd /STK=4 /UG=Rn.23364 /UG_TITLE=ESTs, Moderately similar to A57641 G protein-coupled receptor 4 (H.sapiens) AI170948 G protein-coupled receptor 4 Gpr4 308408 NM_001025680 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1390572_at BF420845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420845 /DB_XREF=gi:11408834 /DB_XREF=UI-R-BJ2-bqa-h-03-0-UI.s1 /CLONE=UI-R-BJ2-bqa-h-03-0-UI /FEA=EST /CNT=5 /TID=Rn.22328.1 /TIER=ConsEnd /STK=4 /UG=Rn.22328 /UG_TITLE=ESTs, Weakly similar to T21672 hypothetical protein F32H2.4 - Caenorhabditis elegans (C.elegans) BF420845 THO complex 3 Thoc3 290519 NM_001106059 0006406 // mRNA export from nucleus // not recorded /// 0046784 // intronless viral mRNA export from host nucleus // not recorded 0000346 // transcription export complex // not recorded 1390573_a_at BG377358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377358 /DB_XREF=gi:13301830 /DB_XREF=UI-R-CU0-bvc-e-08-0-UI.s1 /CLONE=UI-R-CU0-bvc-e-08-0-UI /FEA=EST /CNT=5 /TID=Rn.12790.1 /TIER=ConsEnd /STK=4 /UG=Rn.12790 /UG_TITLE=ESTs, Moderately similar to pNFATC4 (H.sapiens) BG377358 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4 Nfatc4 305897 NM_001107264 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0045333 // cellular respiration // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // inferred from mutant phenotype 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from mutant phenotype 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1390574_at BE101126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101126 /DB_XREF=gi:8493035 /DB_XREF=UI-R-BJ1-auh-d-08-0-UI.s1 /CLONE=UI-R-BJ1-auh-d-08-0-UI /FEA=EST /CNT=5 /TID=Rn.16302.1 /TIER=ConsEnd /STK=4 /UG=Rn.16302 /UG_TITLE=ESTs BE101126 1390575_at BF282989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282989 /DB_XREF=gi:11214059 /DB_XREF=EST447580 /CLONE=RGIDW02 /FEA=EST /CNT=5 /TID=Rn.24641.1 /TIER=ConsEnd /STK=4 /UG=Rn.24641 /UG_TITLE=ESTs, Weakly similar to ZC250.2.p (Caenorhabditis elegans) (C.elegans) BF282989 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1390576_at BE116370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116370 /DB_XREF=gi:8508475 /DB_XREF=UI-R-BS1-ayc-e-02-0-UI.s1 /CLONE=UI-R-BS1-ayc-e-02-0-UI /FEA=EST /CNT=5 /TID=Rn.20631.1 /TIER=ConsEnd /STK=4 /UG=Rn.20631 /UG_TITLE=ESTs BE116370 similar to Putative RNA-binding protein 15 (RNA-binding motif protein 15) (One-twenty two protein) LOC684233 684233 XM_001068152 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1390577_at BF396940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396940 /DB_XREF=gi:11381923 /DB_XREF=UI-R-BS2-bew-h-11-0-UI.s1 /CLONE=UI-R-BS2-bew-h-11-0-UI /FEA=EST /CNT=5 /TID=Rn.34493.1 /TIER=ConsEnd /STK=4 /UG=Rn.34493 /UG_TITLE=ESTs, Weakly similar to T27155 hypothetical protein Y54E5A.7 - Caenorhabditis elegans (C.elegans) BF396940 RAN binding protein 10 Ranbp10 361396 NM_001135875 0000226 // microtubule cytoskeleton organization // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005737 // cytoplasm // not recorded /// 0005881 // cytoplasmic microtubule // not recorded 0005087 // Ran guanyl-nucleotide exchange factor activity // not recorded /// 0008536 // Ran GTPase binding // not recorded /// 0048487 // beta-tubulin binding // not recorded 1390578_at AI578275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578275 /DB_XREF=gi:4562651 /DB_XREF=UI-R-G0-ui-g-08-0-UI.s2 /CLONE=UI-R-G0-ui-g-08-0-UI /FEA=EST /CNT=5 /TID=Rn.39209.1 /TIER=ConsEnd /STK=4 /UG=Rn.39209 /UG_TITLE=ESTs AI578275 Brain serine/threonine kinase 2 Brsk2 293631 XM_001063734 /// XM_219498 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006974 // response to DNA damage stimulus // inferred from sequence or structural similarity /// 0009411 // response to UV // inferred from sequence or structural similarity /// 0010212 // response to ionizing radiation // inferred from sequence or structural similarity /// 0030010 // establishment of cell polarity // not recorded /// 0030182 // neuron differentiation // not recorded /// 0031572 // G2/M transition DNA damage checkpoint // inferred from sequence or structural similarity 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1390579_at BI294760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294760 /DB_XREF=gi:14957528 /DB_XREF=UI-R-DK0-ceb-g-09-0-UI.s1 /CLONE=UI-R-DK0-ceb-g-09-0-UI /FEA=EST /CNT=5 /TID=Rn.27406.1 /TIER=ConsEnd /STK=4 /UG=Rn.27406 /UG_TITLE=ESTs BI294760 similar to RIKEN cDNA 1810029B16 RGD1305222 290686 NM_001169102 1390580_at BG378657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378657 /DB_XREF=gi:13303129 /DB_XREF=UI-R-BT1-bnj-a-11-0-UI.s1 /CLONE=UI-R-BT1-bnj-a-11-0-UI /FEA=EST /CNT=5 /TID=Rn.47571.1 /TIER=ConsEnd /STK=4 /UG=Rn.47571 /UG_TITLE=ESTs BG378657 1390581_at AA819481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819481 /DB_XREF=gi:4228617 /DB_XREF=UI-R-A0-bl-a-06-0-UI.s1 /CLONE=UI-R-A0-bl-a-06-0-UI /FEA=EST /CNT=5 /TID=Rn.2077.1 /TIER=ConsEnd /STK=4 /UG=Rn.2077 /UG_TITLE=ESTs AA819481 1390582_s_at AI598730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598730 /DB_XREF=gi:4607778 /DB_XREF=EST250433 /CLONE=REMED20 /FEA=EST /CNT=5 /TID=Rn.40242.1 /TIER=ConsEnd /STK=4 /UG=Rn.40242 /UG_TITLE=ESTs, Weakly similar to NGFR RAT LOW-AFFINITY NERVE GROWTH FACTOR RECEPTOR PRECURSOR (R.norvegicus) AI598730 neurotrophin receptor associated death domain Nradd 246143 NM_139259 0007165 // signal transduction // inferred from electronic annotation /// 0009790 // embryo development // inferred from expression pattern /// 0010942 // positive regulation of cell death // inferred from direct assay 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005641 // nuclear envelope lumen // inferred from electronic annotation /// 0005641 // nuclear envelope lumen // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0032589 // neuron projection membrane // inferred from direct assay /// 0044298 // cell body membrane // inferred from direct assay 0005166 // neurotrophin p75 receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation 1390583_at AI228169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228169 /DB_XREF=gi:3812056 /DB_XREF=EST224864 /CLONE=RBRCR31 /FEA=EST /CNT=5 /TID=Rn.24839.1 /TIER=ConsEnd /STK=4 /UG=Rn.24839 /UG_TITLE=ESTs AI228169 1390584_at BE105967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105967 /DB_XREF=gi:8498069 /DB_XREF=UI-R-BX0-asc-c-11-0-UI.s1 /CLONE=UI-R-BX0-asc-c-11-0-UI /FEA=EST /CNT=5 /TID=Rn.23185.1 /TIER=ConsEnd /STK=4 /UG=Rn.23185 /UG_TITLE=ESTs BE105967 ring finger protein 165 Rnf165 307251 NM_001164505 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390585_at AI169829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169829 /DB_XREF=gi:4134444 /DB_XREF=EST215732 /CLONE=RLIAT77 /FEA=EST /CNT=5 /TID=Rn.14469.1 /TIER=ConsEnd /STK=4 /UG=Rn.14469 /UG_TITLE=ESTs AI169829 mannan-binding lectin serine peptidase 1 Masp1 64023 NM_022257 0001867 // complement activation, lectin pathway // not recorded /// 0001867 // complement activation, lectin pathway // inferred from sequence or structural similarity /// 0001867 // complement activation, lectin pathway // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0006956 // complement activation // non-traceable author statement /// 0008152 // metabolic process // not recorded /// 0045087 // innate immune response // inferred from electronic annotation /// 0045916 // negative regulation of complement activation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from direct assay /// 0004252 // serine-type endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from physical interaction /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from physical interaction /// 0048306 // calcium-dependent protein binding // not recorded 1390586_at AA924192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924192 /DB_XREF=gi:4234332 /DB_XREF=UI-R-E0-bp-d-09-0-UI.s3 /CLONE=UI-R-E0-bp-d-09-0-UI /FEA=EST /CNT=5 /TID=Rn.8308.1 /TIER=ConsEnd /STK=4 /UG=Rn.8308 /UG_TITLE=ESTs AA924192 Similar to Jumonji/ARID domain-containing protein 1C (SmcX protein) RGD1560601 317432 XM_001064297 /// XM_241817 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390587_x_at AW525862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525862 /DB_XREF=gi:7168247 /DB_XREF=UI-R-BJ0p-ais-f-07-0-UI.s1 /CLONE=UI-R-BJ0p-ais-f-07-0-UI /FEA=EST /CNT=5 /TID=Rn.43236.1 /TIER=ConsEnd /STK=4 /UG=Rn.43236 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) AW525862 1390588_at AI549091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549091 /DB_XREF=gi:4466579 /DB_XREF=UI-R-C3-tq-d-11-0-UI.s1 /CLONE=UI-R-C3-tq-d-11-0-UI /FEA=EST /CNT=5 /TID=Rn.41607.1 /TIER=ConsEnd /STK=4 /UG=Rn.41607 /UG_TITLE=ESTs AI549091 1390589_at AI030995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030995 /DB_XREF=gi:3248821 /DB_XREF=UI-R-C0-je-d-09-0-UI.s1 /CLONE=UI-R-C0-je-d-09-0-UI /FEA=EST /CNT=5 /TID=Rn.18653.1 /TIER=ConsEnd /STK=4 /UG=Rn.18653 /UG_TITLE=ESTs AI030995 Helicase, lymphoid specific Hells 294071 NM_001106371 0001655 // urogenital system development // not recorded /// 0006306 // DNA methylation // not recorded /// 0006342 // chromatin silencing // not recorded /// 0006346 // methylation-dependent chromatin silencing // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0007275 // multicellular organismal development // not recorded /// 0010216 // maintenance of DNA methylation // not recorded /// 0031508 // centromeric heterochromatin formation // not recorded /// 0046651 // lymphocyte proliferation // not recorded 0000775 // chromosome, centromeric region // not recorded /// 0005634 // nucleus // not recorded /// 0005721 // centromeric heterochromatin // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1390590_at AA965207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965207 /DB_XREF=gi:4280081 /DB_XREF=UI-R-C0-gz-e-04-0-UI.s1 /CLONE=UI-R-C0-gz-e-04-0-UI /FEA=EST /CNT=5 /TID=Rn.30351.1 /TIER=ConsEnd /STK=4 /UG=Rn.30351 /UG_TITLE=ESTs, Highly similar to T14795 hypothetical protein DKFZp434E171.1 (H.sapiens) AA965207 protein O-fucosyltransferase 2 Pofut2 309686 NM_001107621 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1390591_at AI169163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169163 /DB_XREF=gi:3705471 /DB_XREF=EST214997 /CLONE=RKIBO32 /FEA=EST /CNT=5 /TID=Rn.16357.1 /TIER=ConsEnd /STK=4 /UG=Rn.16357 /UG_TITLE=ESTs AI169163 solute carrier family 17 (sodium phosphate), member 3 Slc17a3 266730 NM_153622 0006814 // sodium ion transport // traceable author statement /// 0006817 // phosphate transport // traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation 0005436 // sodium:phosphate symporter activity // traceable author statement 1390592_at BM389412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389412 /DB_XREF=gi:18189465 /DB_XREF=UI-R-CN1-cjk-m-05-0-UI.s1 /CLONE=UI-R-CN1-cjk-m-05-0-UI /FEA=EST /CNT=5 /TID=Rn.43752.1 /TIER=ConsEnd /STK=4 /UG=Rn.43752 /UG_TITLE=ESTs, Moderately similar to T14273 zinc finger protein 106 - mouse (M.musculus) BM389412 Similar to SH3-domain binding protein 3 LOC688018 688018 XR_009418 1390593_at BF419668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419668 /DB_XREF=gi:11407657 /DB_XREF=UI-R-CA0-bpe-g-11-0-UI.s1 /CLONE=UI-R-CA0-bpe-g-11-0-UI /FEA=EST /CNT=5 /TID=Rn.64371.1 /TIER=ConsEnd /STK=4 /UG=Rn.64371 /UG_TITLE=ESTs BF419668 1390594_at AI101278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101278 /DB_XREF=gi:3704621 /DB_XREF=EST210567 /CLONE=RBRBK70 /FEA=EST /CNT=5 /TID=Rn.22619.1 /TIER=ConsEnd /STK=4 /UG=Rn.22619 /UG_TITLE=ESTs, Weakly similar to splicing factor, arginineserine-rich (transformer 2 Drosophila homolog) 10 (Rattus norvegicus) (R.norvegicus) AI101278 Ataxin 2 binding protein 1 A2bp1 302920 NM_001106974 0005737 // cytoplasm // not recorded /// 0005802 // trans-Golgi network // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded 1390595_at AW527996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527996 /DB_XREF=gi:7170410 /DB_XREF=UI-R-BT1-akg-e-05-0-UI.s1 /CLONE=UI-R-BT1-akg-e-05-0-UI /FEA=EST /CNT=5 /TID=Rn.50462.1 /TIER=ConsEnd /STK=4 /UG=Rn.50462 /UG_TITLE=ESTs AW527996 1390596_at BG378791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378791 /DB_XREF=gi:13303263 /DB_XREF=UI-R-CV1-bvs-h-06-0-UI.s1 /CLONE=UI-R-CV1-bvs-h-06-0-UI /FEA=EST /CNT=5 /TID=Rn.12340.1 /TIER=ConsEnd /STK=4 /UG=Rn.12340 /UG_TITLE=ESTs, Moderately similar to A55253 melanoma antigen MART-1 (H.sapiens) BG378791 melan-A Mlana 293890 NM_001106348 0005789 // endoplasmic reticulum membrane // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005802 // trans-Golgi network // not recorded /// 0042470 // melanosome // not recorded 0005515 // protein binding // not recorded 1390597_at BF419818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419818 /DB_XREF=gi:11407807 /DB_XREF=UI-R-CA0-bpg-f-03-0-UI.s1 /CLONE=UI-R-CA0-bpg-f-03-0-UI /FEA=EST /CNT=5 /TID=Rn.46498.1 /TIER=ConsEnd /STK=4 /UG=Rn.46498 /UG_TITLE=ESTs BF419818 1390598_at BI294871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294871 /DB_XREF=gi:14957748 /DB_XREF=UI-R-DK0-ced-b-03-0-UI.s1 /CLONE=UI-R-DK0-ced-b-03-0-UI /FEA=EST /CNT=5 /TID=Rn.32717.1 /TIER=ConsEnd /STK=4 /UG=Rn.32717 /UG_TITLE=ESTs BI294871 1390599_at BE101766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101766 /DB_XREF=gi:8493864 /DB_XREF=UI-R-BT1-aqh-b-04-0-UI.s1 /CLONE=UI-R-BT1-aqh-b-04-0-UI /FEA=EST /CNT=5 /TID=Rn.48095.1 /TIER=ConsEnd /STK=4 /UG=Rn.48095 /UG_TITLE=ESTs BE101766 1390600_at AI602313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602313 /DB_XREF=gi:4611474 /DB_XREF=UI-R-AA0-wn-c-05-0-UI.s1 /CLONE=UI-R-AA0-wn-c-05-0-UI /FEA=EST /CNT=5 /TID=Rn.40416.1 /TIER=ConsEnd /STK=4 /UG=Rn.40416 /UG_TITLE=ESTs, Weakly similar to CAG7 RAT ALPHA-N-ACETYLGALACTOSAMINIDE ALPHA-2,6-SIALYLTRANSFERASE (R.norvegicus) AI602313 alpha-2,6-sialyltransferase ST6GalNAc IV siat7D 407764 XM_001080040 0006486 // protein glycosylation // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation 0008373 // sialyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1390601_at BM385386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385386 /DB_XREF=gi:18185439 /DB_XREF=UI-R-CN1-clv-j-05-0-UI.s1 /CLONE=UI-R-CN1-clv-j-05-0-UI /FEA=EST /CNT=5 /TID=Rn.25489.1 /TIER=ConsEnd /STK=4 /UG=Rn.25489 /UG_TITLE=ESTs BM385386 1390602_a_at BG381320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381320 /DB_XREF=gi:13305792 /DB_XREF=UI-R-CT0-bui-g-10-0-UI.s1 /CLONE=UI-R-CT0-bui-g-10-0-UI /FEA=EST /CNT=5 /TID=Rn.8695.1 /TIER=ConsEnd /STK=4 /UG=Rn.8695 /UG_TITLE=ESTs BG381320 similar to RIKEN cDNA C430004E15 LOC499749 499749 NM_001024309 0007605 // sensory perception of sound // not recorded /// 0007605 // sensory perception of sound // inferred from sequence or structural similarity /// 0007605 // sensory perception of sound // inferred from electronic annotation 0032420 // stereocilium // not recorded /// 0032420 // stereocilium // inferred from sequence or structural similarity /// 0032420 // stereocilium // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 1390603_at AA956317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956317 /DB_XREF=gi:4238748 /DB_XREF=UI-R-E1-fj-a-02-0-UI.s1 /CLONE=UI-R-E1-fj-a-02-0-UI /FEA=EST /CNT=5 /TID=Rn.23760.1 /TIER=ConsEnd /STK=4 /UG=Rn.23760 /UG_TITLE=ESTs, Weakly similar to ADP-ribosylation factor 1-directed GTPase activating protein (R.norvegicus) AA956317 1390604_s_at BM387863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387863 /DB_XREF=gi:18187916 /DB_XREF=UI-R-CN1-cjk-f-21-0-UI.s1 /CLONE=UI-R-CN1-cjk-f-21-0-UI /FEA=EST /CNT=5 /TID=Rn.81.1 /TIER=ConsEnd /STK=4 /UG=Rn.81 /UG_TITLE=ESTs, Weakly similar to A57277 beta-3 endonexin, long splice form (H.sapiens) BM387863 integrin beta 3 binding protein (beta3-endonexin) Itgb3bp 362548 NM_001013213 0006350 // transcription // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded 1390605_at BF405113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405113 /DB_XREF=gi:11393088 /DB_XREF=UI-R-CA1-bip-g-12-0-UI.s1 /CLONE=UI-R-CA1-bip-g-12-0-UI /FEA=EST /CNT=4 /TID=Rn.61858.1 /TIER=ConsEnd /STK=4 /UG=Rn.61858 /UG_TITLE=ESTs BF405113 1390606_at BI289052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289052 /DB_XREF=gi:14946227 /DB_XREF=UI-R-DK0-cfe-a-01-0-UI.s1 /CLONE=UI-R-DK0-cfe-a-01-0-UI /FEA=EST /CNT=4 /TID=Rn.26680.1 /TIER=ConsEnd /STK=4 /UG=Rn.26680 /UG_TITLE=ESTs, Weakly similar to protein kinase C-binding protein NELL1 (Rattus norvegicus) (R.norvegicus) BI289052 Hedgehog-interacting protein /// Hedgehog-interacting protein-like Hhip /// LOC100366089 100366089 /// 291936 NM_001191817 /// XM_002725407 /// XM_238042 0007165 // signal transduction // not recorded /// 0007224 // smoothened signaling pathway // not recorded /// 0007405 // neuroblast proliferation // not recorded /// 0009887 // organ morphogenesis // not recorded /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0009968 // negative regulation of signal transduction // not recorded /// 0030324 // lung development // not recorded /// 0040036 // regulation of fibroblast growth factor receptor signaling pathway // not recorded /// 0045879 // negative regulation of smoothened signaling pathway // not recorded 0005887 // integral to plasma membrane // not recorded /// 0009986 // cell surface // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // not recorded 1390607_at BG380706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380706 /DB_XREF=gi:13305178 /DB_XREF=UI-R-CT0-bua-e-03-0-UI.s1 /CLONE=UI-R-CT0-bua-e-03-0-UI /FEA=EST /CNT=4 /TID=Rn.43304.1 /TIER=ConsEnd /STK=4 /UG=Rn.43304 /UG_TITLE=ESTs BG380706 zinc finger, DHHC-type containing 23 Zdhhc23 363783 NM_213627 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390608_at BF404618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404618 /DB_XREF=gi:11392593 /DB_XREF=UI-R-CA1-bih-f-05-0-UI.s1 /CLONE=UI-R-CA1-bih-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.63397.1 /TIER=ConsEnd /STK=4 /UG=Rn.63397 /UG_TITLE=ESTs BF404618 1390609_at BI296683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296683 /DB_XREF=gi:14961355 /DB_XREF=UI-R-CV2-cgv-b-04-0-UI.s1 /CLONE=UI-R-CV2-cgv-b-04-0-UI /FEA=EST /CNT=4 /TID=Rn.27672.1 /TIER=ConsEnd /STK=4 /UG=Rn.27672 /UG_TITLE=ESTs BI296683 1390610_at BF404983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404983 /DB_XREF=gi:11392958 /DB_XREF=UI-R-CA1-bio-a-07-0-UI.s1 /CLONE=UI-R-CA1-bio-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.64356.1 /TIER=ConsEnd /STK=4 /UG=Rn.64356 /UG_TITLE=ESTs BF404983 1390611_at BF406297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406297 /DB_XREF=gi:11394272 /DB_XREF=UI-R-CA1-bjf-f-11-0-UI.s1 /CLONE=UI-R-CA1-bjf-f-11-0-UI /FEA=EST /CNT=4 /TID=Rn.61235.1 /TIER=ConsEnd /STK=4 /UG=Rn.61235 /UG_TITLE=ESTs, Highly similar to GBF1_HUMAN Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 (BFA-resistant GEF 1) (H.sapiens) BF406297 golgi-specific brefeldin A resistant guanine nucleotide exchange factor 1 Gbf1 309451 NM_001191634 /// XM_001066196 /// XM_219953 0006890 // retrograde vesicle-mediated transport, Golgi to ER // not recorded /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0016044 // cellular membrane organization // not recorded /// 0032012 // regulation of ARF protein signal transduction // inferred from electronic annotation /// 0048205 // COPI coating of Golgi vesicle // not recorded 0000139 // Golgi membrane // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005777 // peroxisome // inferred from direct assay /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0005795 // Golgi stack // inferred from direct assay /// 0005801 // cis-Golgi network // inferred from direct assay 0005086 // ARF guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005086 // ARF guanyl-nucleotide exchange factor activity // not recorded /// 0005515 // protein binding // not recorded 1390612_at BI291259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291259 /DB_XREF=gi:14950633 /DB_XREF=UI-R-CV2-cgn-d-09-0-UI.s1 /CLONE=UI-R-CV2-cgn-d-09-0-UI /FEA=EST /CNT=4 /TID=Rn.66269.1 /TIER=ConsEnd /STK=4 /UG=Rn.66269 /UG_TITLE=ESTs BI291259 Hypothetical protein LOC691759 LOC691759 691759 XM_001079531 1390613_at BI291358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291358 /DB_XREF=gi:14950824 /DB_XREF=UI-R-CV2-cgp-b-06-0-UI.s1 /CLONE=UI-R-CV2-cgp-b-06-0-UI /FEA=EST /CNT=4 /TID=Rn.73076.1 /TIER=ConsEnd /STK=4 /UG=Rn.73076 /UG_TITLE=ESTs BI291358 1390614_at BE112987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112987 /DB_XREF=gi:8505092 /DB_XREF=UI-R-BJ1-awf-b-03-0-UI.s1 /CLONE=UI-R-BJ1-awf-b-03-0-UI /FEA=EST /CNT=4 /TID=Rn.52143.1 /TIER=ConsEnd /STK=4 /UG=Rn.52143 /UG_TITLE=ESTs BE112987 1390615_at BI281629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281629 /DB_XREF=gi:14931551 /DB_XREF=UI-R-CT0s-cau-f-04-0-UI.s1 /CLONE=UI-R-CT0s-cau-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.29439.1 /TIER=ConsEnd /STK=4 /UG=Rn.29439 /UG_TITLE=ESTs BI281629 Karyopherin alpha 1 Kpna1 288064 NM_198726 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation 1390616_at BI296731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296731 /DB_XREF=gi:14961451 /DB_XREF=UI-R-CV2-cgv-f-07-0-UI.s1 /CLONE=UI-R-CV2-cgv-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.66966.1 /TIER=ConsEnd /STK=4 /UG=Rn.66966 /UG_TITLE=ESTs BI296731 1390617_at BF405095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405095 /DB_XREF=gi:11393070 /DB_XREF=UI-R-CA1-bip-e-12-0-UI.s1 /CLONE=UI-R-CA1-bip-e-12-0-UI /FEA=EST /CNT=4 /TID=Rn.57602.1 /TIER=ConsEnd /STK=4 /UG=Rn.57602 /UG_TITLE=ESTs BF405095 1390618_at BF394265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394265 /DB_XREF=gi:11379129 /DB_XREF=UI-R-CA0-bhc-h-03-0-UI.s1 /CLONE=UI-R-CA0-bhc-h-03-0-UI /FEA=EST /CNT=4 /TID=Rn.58256.1 /TIER=ConsEnd /STK=4 /UG=Rn.58256 /UG_TITLE=ESTs BF394265 1390619_at AI178473 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178473 /DB_XREF=gi:3729111 /DB_XREF=EST222147 /CLONE=RPLCR50 /FEA=EST /CNT=4 /TID=Rn.24182.1 /TIER=ConsEnd /STK=4 /UG=Rn.24182 /UG_TITLE=ESTs AI178473 1390620_at BI278605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278605 /DB_XREF=gi:14925617 /DB_XREF=UI-R-CW0-bxn-f-09-0-UI.s1 /CLONE=UI-R-CW0-bxn-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.29052.1 /TIER=ConsEnd /STK=4 /UG=Rn.29052 /UG_TITLE=ESTs BI278605 similar to Hypothetical protein MGC25529 RGD1306746 312511 NM_001107872 1390621_at BG376889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376889 /DB_XREF=gi:13301361 /DB_XREF=UI-R-CA1-bli-e-12-0-UI.s1 /CLONE=UI-R-CA1-bli-e-12-0-UI /FEA=EST /CNT=4 /TID=Rn.40753.1 /TIER=ConsEnd /STK=4 /UG=Rn.40753 /UG_TITLE=ESTs BG376889 Similar to RIKEN cDNA 5730454B08 RGD1308290 360845 NM_001047902 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390622_at BE113149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113149 /DB_XREF=gi:8505254 /DB_XREF=UI-R-BJ1-awc-b-02-0-UI.s1 /CLONE=UI-R-BJ1-awc-b-02-0-UI /FEA=EST /CNT=4 /TID=Rn.32200.1 /TIER=ConsEnd /STK=4 /UG=Rn.32200 /UG_TITLE=ESTs BE113149 1390623_at BI279799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279799 /DB_XREF=gi:14927963 /DB_XREF=UI-R-CU0s-cbr-a-10-0-UI.s1 /CLONE=UI-R-CU0s-cbr-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.50461.1 /TIER=ConsEnd /STK=4 /UG=Rn.50461 /UG_TITLE=ESTs BI279799 GINS complex subunit 3 (Psf3 homolog) Gins3 307639 NM_001107408 0006260 // DNA replication // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1390624_at BM382843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM382843 /DB_XREF=gi:18182896 /DB_XREF=UI-R-BT1-bko-e-01-0-UI.s1 /CLONE=UI-R-BT1-bko-e-01-0-UI /FEA=EST /CNT=4 /TID=Rn.20360.1 /TIER=ConsEnd /STK=4 /UG=Rn.20360 /UG_TITLE=ESTs BM382843 proline-rich transmembrane protein 4 Prrt4 500059 NM_001109226 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1390625_at BG381711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381711 /DB_XREF=gi:13306183 /DB_XREF=UI-R-CT0-bue-e-08-0-UI.s1 /CLONE=UI-R-CT0-bue-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.40681.1 /TIER=ConsEnd /STK=4 /UG=Rn.40681 /UG_TITLE=ESTs BG381711 similar to Zinc finger protein 398 (Zinc finger DNA binding protein p52/p71) RGD1304879 312301 NM_001014056 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390626_at BF398788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398788 /DB_XREF=gi:11383789 /DB_XREF=UI-R-BS2-bes-h-04-0-UI.s1 /CLONE=UI-R-BS2-bes-h-04-0-UI /FEA=EST /CNT=4 /TID=Rn.28199.1 /TIER=ConsEnd /STK=4 /UG=Rn.28199 /UG_TITLE=ESTs BF398788 1390627_a_at BE113656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113656 /DB_XREF=gi:8505761 /DB_XREF=UI-R-BJ1-awg-g-11-0-UI.s1 /CLONE=UI-R-BJ1-awg-g-11-0-UI /FEA=EST /CNT=4 /TID=Rn.19492.1 /TIER=ConsEnd /STK=4 /UG=Rn.19492 /UG_TITLE=ESTs, Weakly similar to TBX2 PROTEIN (M.musculus) BE113656 T-box 3 Tbx3 353305 NM_181638 0001501 // skeletal system development // not recorded /// 0001501 // skeletal system development // inferred from sequence or structural similarity /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001947 // heart looping // inferred from electronic annotation /// 0001947 // heart looping // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from sequence or structural similarity /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007569 // cell aging // not recorded /// 0007569 // cell aging // inferred from sequence or structural similarity /// 0007569 // cell aging // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008595 // anterior/posterior axis specification, embryo // not recorded /// 0008595 // anterior/posterior axis specification, embryo // inferred from sequence or structural similarity /// 0008595 // anterior/posterior axis specification, embryo // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010159 // specification of organ position // inferred from electronic annotation /// 0010159 // specification of organ position // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0021761 // limbic system development // inferred from electronic annotation /// 0021761 // limbic system development // not recorded /// 0030539 // male genitalia development // not recorded /// 0030539 // male genitalia development // inferred from sequence or structural similarity /// 0030539 // male genitalia development // inferred from electronic annotation /// 0030540 // female genitalia development // not recorded /// 0030540 // female genitalia development // inferred from sequence or structural similarity /// 0030540 // female genitalia development // inferred from electronic annotation /// 0030879 // mammary gland development // not recorded /// 0030879 // mammary gland development // inferred from sequence or structural similarity /// 0030879 // mammary gland development // inferred from electronic annotation /// 0032275 // luteinizing hormone secretion // not recorded /// 0032275 // luteinizing hormone secretion // inferred from sequence or structural similarity /// 0032275 // luteinizing hormone secretion // inferred from electronic annotation /// 0035108 // limb morphogenesis // not recorded /// 0035108 // limb morphogenesis // inferred from electronic annotation /// 0035117 // embryonic arm morphogenesis // not recorded /// 0035117 // embryonic arm morphogenesis // inferred from sequence or structural similarity /// 0035117 // embryonic arm morphogenesis // inferred from electronic annotation /// 0035136 // forelimb morphogenesis // inferred from electronic annotation /// 0035136 // forelimb morphogenesis // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // not recorded /// 0042733 // embryonic digit morphogenesis // inferred from sequence or structural similarity /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045662 // negative regulation of myoblast differentiation // not recorded /// 0045662 // negative regulation of myoblast differentiation // inferred from sequence or structural similarity /// 0045662 // negative regulation of myoblast differentiation // inferred from electronic annotation /// 0045787 // positive regulation of cell cycle // not recorded /// 0045787 // positive regulation of cell cycle // inferred from sequence or structural similarity /// 0045787 // positive regulation of cell cycle // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0046884 // follicle-stimulating hormone secretion // not recorded /// 0046884 // follicle-stimulating hormone secretion // inferred from sequence or structural similarity /// 0046884 // follicle-stimulating hormone secretion // inferred from electronic annotation /// 0048332 // mesoderm morphogenesis // not recorded /// 0048332 // mesoderm morphogenesis // inferred from sequence or structural similarity /// 0048332 // mesoderm morphogenesis // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0055007 // cardiac muscle cell differentiation // not recorded /// 0060444 // branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060444 // branching involved in mammary gland duct morphogenesis // not recorded /// 0060596 // mammary placode formation // inferred from electronic annotation /// 0060596 // mammary placode formation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016565 // general transcriptional repressor activity // not recorded /// 0016565 // general transcriptional repressor activity // inferred from sequence or structural similarity /// 0016565 // general transcriptional repressor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1390628_at AI010275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010275 /DB_XREF=gi:4133215 /DB_XREF=EST204726 /CLONE=RLUBW32 /FEA=EST /CNT=4 /TID=Rn.17551.1 /TIER=ConsEnd /STK=4 /UG=Rn.17551 /UG_TITLE=ESTs AI010275 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1390629_at BF400629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400629 /DB_XREF=gi:11388604 /DB_XREF=UI-R-CA0-bhd-f-06-0-UI.s1 /CLONE=UI-R-CA0-bhd-f-06-0-UI /FEA=EST /CNT=4 /TID=Rn.64373.1 /TIER=ConsEnd /STK=4 /UG=Rn.64373 /UG_TITLE=ESTs BF400629 1390630_at BE112446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112446 /DB_XREF=gi:8504551 /DB_XREF=UI-R-BJ1-avm-g-07-0-UI.s1 /CLONE=UI-R-BJ1-avm-g-07-0-UI /FEA=EST /CNT=4 /TID=Rn.50064.1 /TIER=ConsEnd /STK=4 /UG=Rn.50064 /UG_TITLE=ESTs BE112446 1390631_at BE107619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107619 /DB_XREF=gi:8499724 /DB_XREF=UI-R-CA0-awv-g-07-0-UI.s1 /CLONE=UI-R-CA0-awv-g-07-0-UI /FEA=EST /CNT=4 /TID=Rn.66300.1 /TIER=ConsEnd /STK=4 /UG=Rn.66300 /UG_TITLE=ESTs BE107619 1390632_at BE107414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107414 /DB_XREF=gi:8499519 /DB_XREF=UI-R-BS1-ayt-d-10-0-UI.s1 /CLONE=UI-R-BS1-ayt-d-10-0-UI /FEA=EST /CNT=4 /TID=Rn.51175.1 /TIER=ConsEnd /STK=4 /UG=Rn.51175 /UG_TITLE=ESTs BE107414 1390633_at BI284943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284943 /DB_XREF=gi:14938094 /DB_XREF=UI-R-DB0-byu-c-11-0-UI.s1 /CLONE=UI-R-DB0-byu-c-11-0-UI /FEA=EST /CNT=4 /TID=Rn.43503.1 /TIER=ConsEnd /STK=4 /UG=Rn.43503 /UG_TITLE=ESTs BI284943 cystatin related protein 2 P22k15 296229 NM_199266 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1390634_at BF400831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400831 /DB_XREF=gi:11388771 /DB_XREF=UI-R-CA0-bhf-g-02-0-UI.s1 /CLONE=UI-R-CA0-bhf-g-02-0-UI /FEA=EST /CNT=4 /TID=Rn.46670.1 /TIER=ConsEnd /STK=4 /UG=Rn.46670 /UG_TITLE=ESTs BF400831 similar to KIAA1407 RGD1566314 288106 XM_001067695 /// XM_221452 1390635_at BE110246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110246 /DB_XREF=gi:8502351 /DB_XREF=UI-R-CA0-axk-g-06-0-UI.s1 /CLONE=UI-R-CA0-axk-g-06-0-UI /FEA=EST /CNT=4 /TID=Rn.51847.1 /TIER=ConsEnd /STK=4 /UG=Rn.51847 /UG_TITLE=ESTs BE110246 1390636_at BG375420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375420 /DB_XREF=gi:13299892 /DB_XREF=UI-R-CV1-btb-b-11-0-UI.s1 /CLONE=UI-R-CV1-btb-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.26834.1 /TIER=ConsEnd /STK=4 /UG=Rn.26834 /UG_TITLE=ESTs BG375420 1390637_at BF406280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406280 /DB_XREF=gi:11394255 /DB_XREF=UI-R-CA1-bjf-b-17-0-UI.s1 /CLONE=UI-R-CA1-bjf-b-17-0-UI /FEA=EST /CNT=4 /TID=Rn.11821.1 /TIER=ConsEnd /STK=4 /UG=Rn.11821 /UG_TITLE=ESTs BF406280 1390638_at AI072459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072459 /DB_XREF=gi:3398653 /DB_XREF=UI-R-C2-nk-g-05-0-UI.s1 /CLONE=UI-R-C2-nk-g-05-0-UI /FEA=EST /CNT=4 /TID=Rn.20163.1 /TIER=ConsEnd /STK=4 /UG=Rn.20163 /UG_TITLE=ESTs AI072459 Eph receptor A4 Epha4 316539 NM_001162411 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007628 // adult walking behavior // not recorded 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005003 // ephrin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046875 // ephrin receptor binding // inferred from direct assay 1390639_at BM387719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387719 /DB_XREF=gi:18187772 /DB_XREF=UI-R-CN1-cjj-j-22-0-UI.s1 /CLONE=UI-R-CN1-cjj-j-22-0-UI /FEA=EST /CNT=4 /TID=Rn.12227.1 /TIER=ConsEnd /STK=4 /UG=Rn.12227 /UG_TITLE=ESTs BM387719 1390640_at AA850760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850760 /DB_XREF=gi:2938300 /DB_XREF=EST193528 /CLONE=ROVAK48 /FEA=EST /CNT=4 /TID=Rn.53402.1 /TIER=ConsEnd /STK=4 /UG=Rn.53402 /UG_TITLE=ESTs AA850760 CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) Chtf18 287146 NM_001105773 0006260 // DNA replication // inferred from electronic annotation 0009360 // DNA polymerase III complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1390641_at BE111799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111799 /DB_XREF=gi:8503904 /DB_XREF=UI-R-BJ1-avx-h-10-0-UI.s1 /CLONE=UI-R-BJ1-avx-h-10-0-UI /FEA=EST /CNT=4 /TID=Rn.52020.1 /TIER=ConsEnd /STK=4 /UG=Rn.52020 /UG_TITLE=ESTs BE111799 Zinc finger protein 346 Zfp346 306765 NM_001107338 0006915 // apoptosis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1390642_at BF394117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394117 /DB_XREF=gi:11378981 /DB_XREF=UI-R-CA0-bgz-f-05-0-UI.s1 /CLONE=UI-R-CA0-bgz-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.62104.1 /TIER=ConsEnd /STK=4 /UG=Rn.62104 /UG_TITLE=ESTs BF394117 1390643_at BF403311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403311 /DB_XREF=gi:11391286 /DB_XREF=UI-R-CA1-biy-c-08-0-UI.s1 /CLONE=UI-R-CA1-biy-c-08-0-UI /FEA=EST /CNT=4 /TID=Rn.60736.1 /TIER=ConsEnd /STK=4 /UG=Rn.60736 /UG_TITLE=ESTs BF403311 1390644_at BE110273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110273 /DB_XREF=gi:8502378 /DB_XREF=UI-R-CA0-axl-a-11-0-UI.s1 /CLONE=UI-R-CA0-axl-a-11-0-UI /FEA=EST /CNT=4 /TID=Rn.51857.1 /TIER=ConsEnd /STK=4 /UG=Rn.51857 /UG_TITLE=ESTs BE110273 1390645_at AI406637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406637 /DB_XREF=gi:4250141 /DB_XREF=EST234924 /CLONE=RBRDO10 /FEA=EST /CNT=4 /TID=Rn.34130.1 /TIER=ConsEnd /STK=4 /UG=Rn.34130 /UG_TITLE=ESTs AI406637 1390646_at BE115520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115520 /DB_XREF=gi:8507625 /DB_XREF=UI-R-BS1-axw-g-11-0-UI.s1 /CLONE=UI-R-BS1-axw-g-11-0-UI /FEA=EST /CNT=4 /TID=Rn.42688.1 /TIER=ConsEnd /STK=4 /UG=Rn.42688 /UG_TITLE=ESTs BE115520 1390647_at AI410924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410924 /DB_XREF=gi:4254428 /DB_XREF=EST239217 /CLONE=RHECY20 /FEA=EST /CNT=4 /TID=Rn.18302.1 /TIER=ConsEnd /STK=4 /UG=Rn.18302 /UG_TITLE=ESTs AI410924 putative homeodomain transcription factor 2 Phtf2 296762 NM_001106577 0005783 // endoplasmic reticulum // not recorded 1390648_at AW523544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523544 /DB_XREF=gi:7165929 /DB_XREF=UI-R-BO0-ahu-c-11-0-UI.s1 /CLONE=UI-R-BO0-ahu-c-11-0-UI /FEA=EST /CNT=4 /TID=Rn.28217.1 /TIER=ConsEnd /STK=4 /UG=Rn.28217 /UG_TITLE=ESTs, Highly similar to T14346 Herc2 protein - mouse (M.musculus) AW523544 hect domain and RLD 2 Herc2 308669 NM_001107520 0006464 // protein modification process // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030071 // regulation of mitotic metaphase/anaphase transition // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005680 // anaphase-promoting complex // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390649_at AW520784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520784 /DB_XREF=gi:7163162 /DB_XREF=UI-R-BJ0p-agh-d-12-0-UI.s1 /CLONE=UI-R-BJ0p-agh-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.9297.1 /TIER=ConsEnd /STK=4 /UG=Rn.9297 /UG_TITLE=ESTs AW520784 solute carrier family 30 (zinc transporter), member 3 Slc30a3 366568 NM_001013243 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006829 // zinc ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0061088 // regulation of sequestering of zinc ion // inferred from electronic annotation /// 0061088 // regulation of sequestering of zinc ion // not recorded 0005770 // late endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0044444 // cytoplasmic part // not recorded /// 0044444 // cytoplasmic part // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0008324 // cation transmembrane transporter activity // inferred from electronic annotation 1390650_at BI290593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290593 /DB_XREF=gi:14949307 /DB_XREF=UI-R-DK0-cfx-a-10-0-UI.s1 /CLONE=UI-R-DK0-cfx-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.40719.1 /TIER=ConsEnd /STK=4 /UG=Rn.40719 /UG_TITLE=ESTs BI290593 nucleoporin 85 Nup85 287830 NM_001025401 0006810 // transport // inferred from electronic annotation /// 0006935 // chemotaxis // inferred from electronic annotation /// 0006935 // chemotaxis // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0030032 // lamellipodium assembly // inferred from electronic annotation /// 0030032 // lamellipodium assembly // not recorded /// 0048246 // macrophage chemotaxis // inferred from electronic annotation /// 0048246 // macrophage chemotaxis // not recorded /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // not recorded /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0000922 // spindle pole // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031080 // Nup107-160 complex // not recorded /// 0031080 // Nup107-160 complex // inferred from sequence or structural similarity /// 0031965 // nuclear membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390651_at AI236271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236271 /DB_XREF=gi:3829777 /DB_XREF=EST232833 /CLONE=ROVDD51 /FEA=EST /CNT=4 /TID=Rn.25498.1 /TIER=ConsEnd /STK=4 /UG=Rn.25498 /UG_TITLE=ESTs AI236271 similar to KIAA1161 protein RGD1309821 366360 NM_001108971 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation 1390652_at BF390059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390059 /DB_XREF=gi:11374901 /DB_XREF=UI-R-BS2-bdr-g-08-0-UI.s1 /CLONE=UI-R-BS2-bdr-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.45081.1 /TIER=ConsEnd /STK=4 /UG=Rn.45081 /UG_TITLE=ESTs BF390059 1390653_at AI171174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171174 /DB_XREF=gi:4134591 /DB_XREF=EST217124 /CLONE=RMUBH15 /FEA=EST /CNT=4 /TID=Rn.20078.1 /TIER=ConsEnd /STK=4 /UG=Rn.20078 /UG_TITLE=ESTs AI171174 WD repeat domain 89 Wdr89 314243 NM_001014078 1390654_at AA874809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA874809 /DB_XREF=gi:4230692 /DB_XREF=UI-R-E0-bw-h-02-0-UI.s1 /CLONE=UI-R-E0-bw-h-02-0-UI /FEA=EST /CNT=4 /TID=Rn.24363.1 /TIER=ConsEnd /STK=4 /UG=Rn.24363 /UG_TITLE=ESTs AA874809 1390655_at BF420653 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420653 /DB_XREF=gi:11408642 /DB_XREF=UI-R-BJ2-bpy-e-09-0-UI.s1 /CLONE=UI-R-BJ2-bpy-e-09-0-UI /FEA=EST /CNT=4 /TID=Rn.63735.1 /TIER=ConsEnd /STK=4 /UG=Rn.63735 /UG_TITLE=ESTs, Highly similar to T14155 zinc finger protein Peg3 - mouse (M.musculus) BF420653 rCG32052-like LOC100363005 100363005 XM_002725510 /// XM_002728663 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1390656_at BF389473 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389473 /DB_XREF=gi:11374306 /DB_XREF=UI-R-CJ0-bfc-b-11-0-UI.s1 /CLONE=UI-R-CJ0-bfc-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.64376.1 /TIER=ConsEnd /STK=4 /UG=Rn.64376 /UG_TITLE=ESTs BF389473 1390657_at BI291389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291389 /DB_XREF=gi:14950887 /DB_XREF=UI-R-CV2-cgp-e-08-0-UI.s1 /CLONE=UI-R-CV2-cgp-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.66258.1 /TIER=ConsEnd /STK=4 /UG=Rn.66258 /UG_TITLE=ESTs BI291389 1390658_at BF408763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408763 /DB_XREF=gi:11396738 /DB_XREF=UI-R-BT1-bne-a-06-0-UI.s1 /CLONE=UI-R-BT1-bne-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.61178.1 /TIER=ConsEnd /STK=4 /UG=Rn.61178 /UG_TITLE=ESTs BF408763 microtubule associated serine/threonine kinase family member 4 Mast4 310040 XM_001063274 /// XM_226732 0006468 // protein phosphorylation // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1390659_at BI302830 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302830 /DB_XREF=gi:14979110 /DB_XREF=UI-R-DQ0-ciz-j-08-0-UI.s1 /CLONE=UI-R-DQ0-ciz-j-08-0-UI /FEA=EST /CNT=4 /TID=Rn.28409.1 /TIER=ConsEnd /STK=4 /UG=Rn.28409 /UG_TITLE=ESTs BI302830 1390660_at BE105596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105596 /DB_XREF=gi:8497698 /DB_XREF=UI-R-BX0-ash-g-04-0-UI.s1 /CLONE=UI-R-BX0-ash-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.49204.1 /TIER=ConsEnd /STK=4 /UG=Rn.49204 /UG_TITLE=ESTs, Highly similar to TBX2 MOUSE TBX2 PROTEIN (M.musculus) BE105596 T-box 2 Tbx2 303398 NM_001107033 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007521 // muscle cell fate determination // not recorded /// 0007569 // cell aging // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0048738 // cardiac muscle tissue development // not recorded /// 0060596 // mammary placode formation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // not recorded 1390661_at BE115928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115928 /DB_XREF=gi:8508033 /DB_XREF=UI-R-BS1-axx-e-07-0-UI.s1 /CLONE=UI-R-BS1-axx-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.17513.1 /TIER=ConsEnd /STK=4 /UG=Rn.17513 /UG_TITLE=ESTs BE115928 1390662_at AW435169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435169 /DB_XREF=gi:6966476 /DB_XREF=UI-R-BJ0p-afj-c-12-0-UI.s1 /CLONE=UI-R-BJ0p-afj-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.20976.1 /TIER=ConsEnd /STK=4 /UG=Rn.20976 /UG_TITLE=ESTs AW435169 1390663_at BG373109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373109 /DB_XREF=gi:13269646 /DB_XREF=UI-R-CV1-bsf-f-01-0-UI.s1 /CLONE=UI-R-CV1-bsf-f-01-0-UI /FEA=EST /CNT=4 /TID=Rn.76510.1 /TIER=ConsEnd /STK=4 /UG=Rn.76510 /UG_TITLE=ESTs BG373109 1390664_at AI410837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410837 /DB_XREF=gi:4254341 /DB_XREF=EST239130 /CLONE=RHECZ94 /FEA=EST /CNT=4 /TID=Rn.39141.1 /TIER=ConsEnd /STK=4 /UG=Rn.39141 /UG_TITLE=ESTs AI410837 transmembrane protein 116 Tmem116 690442 NM_001159625 1390665_at AA848412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848412 /DB_XREF=gi:2935952 /DB_XREF=EST191172 /CLONE=RKIAC15 /FEA=EST /CNT=4 /TID=Rn.60747.1 /TIER=ConsEnd /STK=4 /UG=Rn.60747 /UG_TITLE=ESTs AA848412 transmembrane protein 72 Tmem72 362424 NM_001108643 1390666_at BI295507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295507 /DB_XREF=gi:14959014 /DB_XREF=UI-R-DK0-cev-b-09-0-UI.s1 /CLONE=UI-R-DK0-cev-b-09-0-UI /FEA=EST /CNT=4 /TID=Rn.29352.1 /TIER=ConsEnd /STK=4 /UG=Rn.29352 /UG_TITLE=ESTs BI295507 testis expressed 19 Tex19 691099 NM_001109622 0005634 // nucleus // not recorded 1390667_at BF408543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408543 /DB_XREF=gi:11396518 /DB_XREF=UI-R-BJ2-brf-a-06-0-UI.s1 /CLONE=UI-R-BJ2-brf-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.34498.1 /TIER=ConsEnd /STK=4 /UG=Rn.34498 /UG_TITLE=ESTs, Weakly similar to C212_HUMAN 28.3 KD PROTEIN C21ORF2 (H.sapiens) BF408543 leucine rich transmembrane and 0-methyltransferase domain containing Lrtomt 293156 NM_001106284 0005737 // cytoplasm // inferred from electronic annotation 1390668_at BG378312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378312 /DB_XREF=gi:13302784 /DB_XREF=UI-R-CV1-bvq-f-04-0-UI.s1 /CLONE=UI-R-CV1-bvq-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.76800.1 /TIER=ConsEnd /STK=4 /UG=Rn.76800 /UG_TITLE=ESTs BG378312 structural maintenance of chromosomes 3 Smc3 29486 NM_031583 0006275 // regulation of DNA replication // inferred from sequence or structural similarity /// 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007052 // mitotic spindle organization // not recorded /// 0007052 // mitotic spindle organization // inferred from sequence or structural similarity /// 0007062 // sister chromatid cohesion // not recorded /// 0007067 // mitosis // inferred from electronic annotation /// 0007126 // meiosis // not recorded /// 0007126 // meiosis // inferred from sequence or structural similarity /// 0007126 // meiosis // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from sequence or structural similarity /// 0032876 // negative regulation of DNA endoreduplication // not recorded /// 0051276 // chromosome organization // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000785 // chromatin // not recorded /// 0000785 // chromatin // inferred from sequence or structural similarity /// 0000800 // lateral element // not recorded /// 0000922 // spindle pole // not recorded /// 0000922 // spindle pole // inferred from sequence or structural similarity /// 0005604 // basement membrane // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0016363 // nuclear matrix // not recorded /// 0016363 // nuclear matrix // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // inferred from expression pattern /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0045502 // dynein binding // not recorded /// 0045502 // dynein binding // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // not recorded 1390669_at AI639410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639410 /DB_XREF=gi:4700444 /DB_XREF=rx04114s /CLONE=rx04114 /FEA=EST /CNT=4 /TID=Rn.15385.1 /TIER=ConsEnd /STK=4 /UG=Rn.15385 /UG_TITLE=ESTs AI639410 1390670_at BF405447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405447 /DB_XREF=gi:11393422 /DB_XREF=UI-R-CA1-bix-g-15-0-UI.s1 /CLONE=UI-R-CA1-bix-g-15-0-UI /FEA=EST /CNT=4 /TID=Rn.60760.1 /TIER=ConsEnd /STK=4 /UG=Rn.60760 /UG_TITLE=ESTs BF405447 1390671_at AI044666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044666 /DB_XREF=gi:3291527 /DB_XREF=UI-R-C1-jx-f-12-0-UI.s1 /CLONE=UI-R-C1-jx-f-12-0-UI /FEA=EST /CNT=4 /TID=Rn.52605.1 /TIER=ConsEnd /STK=4 /UG=Rn.52605 /UG_TITLE=ESTs AI044666 1390672_at BG381258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381258 /DB_XREF=gi:13305730 /DB_XREF=UI-R-CT0-bui-a-11-0-UI.s1 /CLONE=UI-R-CT0-bui-a-11-0-UI /FEA=EST /CNT=4 /TID=Rn.45197.1 /TIER=ConsEnd /STK=4 /UG=Rn.45197 /UG_TITLE=ESTs BG381258 reprimo, TP53 dependent G2 arrest mediator candidate Rprm 680110 NM_001044276 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0007346 // regulation of mitotic cell cycle // inferred from electronic annotation /// 0007346 // regulation of mitotic cell cycle // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390673_at BF400603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400603 /DB_XREF=gi:11388578 /DB_XREF=UI-R-CA0-bhd-d-02-0-UI.s1 /CLONE=UI-R-CA0-bhd-d-02-0-UI /FEA=EST /CNT=4 /TID=Rn.58184.1 /TIER=ConsEnd /STK=4 /UG=Rn.58184 /UG_TITLE=ESTs BF400603 1390674_at BE097195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097195 /DB_XREF=gi:8488126 /DB_XREF=UI-R-BO1-apu-d-03-0-UI.s1 /CLONE=UI-R-BO1-apu-d-03-0-UI /FEA=EST /CNT=4 /TID=Rn.14656.1 /TIER=ConsEnd /STK=4 /UG=Rn.14656 /UG_TITLE=ESTs BE097195 1390675_at BE119856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119856 /DB_XREF=gi:8511961 /DB_XREF=UI-R-CA0-ban-g-08-0-UI.s1 /CLONE=UI-R-CA0-ban-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.53376.1 /TIER=ConsEnd /STK=4 /UG=Rn.53376 /UG_TITLE=ESTs BE119856 1390676_at BF415506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415506 /DB_XREF=gi:11403495 /DB_XREF=UI-R-CA1-bjz-g-08-0-UI.s1 /CLONE=UI-R-CA1-bjz-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.62719.1 /TIER=ConsEnd /STK=4 /UG=Rn.62719 /UG_TITLE=ESTs BF415506 1390677_at BF413126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413126 /DB_XREF=gi:11401115 /DB_XREF=UI-R-BT1-bnx-a-01-0-UI.s1 /CLONE=UI-R-BT1-bnx-a-01-0-UI /FEA=EST /CNT=4 /TID=Rn.47612.1 /TIER=ConsEnd /STK=4 /UG=Rn.47612 /UG_TITLE=ESTs BF413126 fibrinogen C domain containing 1 Fibcd1 311861 NM_001107829 0007165 // signal transduction // inferred from electronic annotation 0005615 // extracellular space // inferred from electronic annotation /// 0016020 // membrane // not recorded 0005102 // receptor binding // inferred from electronic annotation /// 0008061 // chitin binding // not recorded 1390678_at AA955527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955527 /DB_XREF=gi:4237922 /DB_XREF=UI-R-E1-fa-f-02-0-UI.s1 /CLONE=UI-R-E1-fa-f-02-0-UI /FEA=EST /CNT=4 /TID=Rn.8840.2 /TIER=ConsEnd /STK=4 /UG=Rn.8840 /UG_TITLE=ESTs AA955527 1390679_at BI300412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300412 /DB_XREF=gi:14976692 /DB_XREF=UI-R-CV2-cie-f-07-0-UI.s1 /CLONE=UI-R-CV2-cie-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.66996.1 /TIER=ConsEnd /STK=4 /UG=Rn.66996 /UG_TITLE=ESTs BI300412 1390680_at AI059409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059409 /DB_XREF=gi:3333186 /DB_XREF=UI-R-C1-kw-a-07-0-UI.s1 /CLONE=UI-R-C1-kw-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.2136.1 /TIER=ConsEnd /STK=4 /UG=Rn.2136 /UG_TITLE=ESTs AI059409 1390681_at AA964074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964074 /DB_XREF=gi:4278950 /DB_XREF=UI-R-C0-gw-c-06-0-UI.s1 /CLONE=UI-R-C0-gw-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.11697.1 /TIER=ConsEnd /STK=4 /UG=Rn.11697 /UG_TITLE=ESTs AA964074 similar to TGFB-induced factor 2 RGD1564927 499929 NM_001134983 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1390682_at BE105446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105446 /DB_XREF=gi:8497548 /DB_XREF=UI-R-BO1-asn-h-03-0-UI.s1 /CLONE=UI-R-BO1-asn-h-03-0-UI /FEA=EST /CNT=4 /TID=Rn.50776.1 /TIER=ConsEnd /STK=4 /UG=Rn.50776 /UG_TITLE=ESTs, Highly similar to S64718 formin-binding protein 17 - mouse (M.musculus) BE105446 formin binding protein 1 Fnbp1 192348 NM_138914 0006897 // endocytosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from direct assay /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1390683_at BF418127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418127 /DB_XREF=gi:11406116 /DB_XREF=UI-R-CA0-blz-g-11-0-UI.s1 /CLONE=UI-R-CA0-blz-g-11-0-UI /FEA=EST /CNT=4 /TID=Rn.50859.1 /TIER=ConsEnd /STK=4 /UG=Rn.50859 /UG_TITLE=ESTs BF418127 1390684_at AA892642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892642 /DB_XREF=gi:3019521 /DB_XREF=EST196445 /CLONE=RKIAV23 /FEA=EST /CNT=4 /TID=Rn.14778.1 /TIER=ConsEnd /STK=4 /UG=Rn.14778 /UG_TITLE=ESTs AA892642 1390685_at BF395810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395810 /DB_XREF=gi:11380781 /DB_XREF=UI-R-BT1-bkc-e-09-0-UI.s1 /CLONE=UI-R-BT1-bkc-e-09-0-UI /FEA=EST /CNT=4 /TID=Rn.47283.1 /TIER=ConsEnd /STK=4 /UG=Rn.47283 /UG_TITLE=ESTs BF395810 1390686_at BF403469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403469 /DB_XREF=gi:11391444 /DB_XREF=UI-R-CA1-biy-p-17-0-UI.s1 /CLONE=UI-R-CA1-biy-p-17-0-UI /FEA=EST /CNT=4 /TID=Rn.61767.1 /TIER=ConsEnd /STK=4 /UG=Rn.61767 /UG_TITLE=ESTs BF403469 1390687_at AI556803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556803 /DB_XREF=gi:4489166 /DB_XREF=UI-R-C2p-rm-f-07-0-UI.s1 /CLONE=UI-R-C2p-rm-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.6178.1 /TIER=ConsEnd /STK=4 /UG=Rn.6178 /UG_TITLE=ESTs, Moderately similar to PLEK_HUMAN PLECKSTRIN (H.sapiens) AI556803 pleckstrin Plek 364206 NM_001025750 0002244 // hemopoietic progenitor cell differentiation // inferred from electronic annotation /// 0002244 // hemopoietic progenitor cell differentiation // not recorded /// 0002576 // platelet degranulation // not recorded /// 0002576 // platelet degranulation // inferred from electronic annotation /// 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation /// 0006904 // vesicle docking involved in exocytosis // not recorded /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // not recorded /// 0010572 // positive regulation of platelet activation // inferred from electronic annotation /// 0010572 // positive regulation of platelet activation // not recorded /// 0010920 // negative regulation of inositol phosphate biosynthetic process // inferred from electronic annotation /// 0010920 // negative regulation of inositol phosphate biosynthetic process // not recorded /// 0010925 // positive regulation of inositol-polyphosphate 5-phosphatase activity // inferred from electronic annotation /// 0010925 // positive regulation of inositol-polyphosphate 5-phosphatase activity // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030030 // cell projection organization // not recorded /// 0030030 // cell projection organization // inferred from electronic annotation /// 0030384 // phosphoinositide metabolic process // inferred from electronic annotation /// 0030384 // phosphoinositide metabolic process // not recorded /// 0030836 // positive regulation of actin filament depolymerization // inferred from electronic annotation /// 0030836 // positive regulation of actin filament depolymerization // not recorded /// 0030845 // inhibition of phospholipase C activity involved in G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0030845 // inhibition of phospholipase C activity involved in G-protein coupled receptor signaling pathway // not recorded /// 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation /// 0030866 // cortical actin cytoskeleton organization // not recorded /// 0031529 // ruffle organization // inferred from electronic annotation /// 0031529 // ruffle organization // not recorded /// 0031532 // actin cytoskeleton reorganization // inferred from electronic annotation /// 0031532 // actin cytoskeleton reorganization // not recorded /// 0032233 // positive regulation of actin filament bundle assembly // inferred from electronic annotation /// 0032233 // positive regulation of actin filament bundle assembly // not recorded /// 0033625 // positive regulation of integrin activation // inferred from electronic annotation /// 0033625 // positive regulation of integrin activation // not recorded /// 0045744 // negative regulation of G-protein coupled receptor protein signaling pathway // not recorded /// 0045744 // negative regulation of G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0060305 // regulation of cell diameter // inferred from electronic annotation /// 0060305 // regulation of cell diameter // not recorded /// 0070493 // thrombin receptor signaling pathway // inferred from electronic annotation /// 0070493 // thrombin receptor signaling pathway // not recorded /// 0070527 // platelet aggregation // inferred from electronic annotation /// 0070527 // platelet aggregation // not recorded /// 0070528 // protein kinase C signaling cascade // inferred from electronic annotation /// 0070528 // protein kinase C signaling cascade // not recorded /// 0070560 // protein secretion by platelet // inferred from electronic annotation /// 0070560 // protein secretion by platelet // not recorded 0005576 // extracellular region // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0032587 // ruffle membrane // inferred from electronic annotation /// 0032587 // ruffle membrane // not recorded 0005080 // protein kinase C binding // inferred from electronic annotation /// 0005080 // protein kinase C binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // inferred from electronic annotation /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // not recorded 1390688_at AA799576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799576 /DB_XREF=gi:2862531 /DB_XREF=EST189073 /CLONE=RHEAC72 /FEA=EST /CNT=4 /TID=Rn.6205.1 /TIER=ConsEnd /STK=4 /UG=Rn.6205 /UG_TITLE=ESTs, Highly similar to T46259 hypothetical protein DKFZp761E0323.1 (H.sapiens) AA799576 DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 Ddx50 361848 NM_001013198 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1390689_at BF401605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401605 /DB_XREF=gi:11389580 /DB_XREF=UI-R-CA0-bgm-e-11-0-UI.s1 /CLONE=UI-R-CA0-bgm-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.62050.1 /TIER=ConsEnd /STK=4 /UG=Rn.62050 /UG_TITLE=ESTs BF401605 ribosomal protein S6 kinase, polypeptide 1 Rps6kc1 289342 NM_001105984 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation 0005769 // early endosome // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1390690_at BF564881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564881 /DB_XREF=gi:11674611 /DB_XREF=UI-R-BU0-amz-d-06-0-UI.r1 /CLONE=UI-R-BU0-amz-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.20292.1 /TIER=ConsEnd /STK=4 /UG=Rn.20292 /UG_TITLE=ESTs BF564881 1390691_at AW252626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252626 /DB_XREF=gi:6596217 /DB_XREF=UI-R-BJ0-add-g-04-0-UI.s1 /CLONE=UI-R-BJ0-add-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.41466.1 /TIER=ConsEnd /STK=4 /UG=Rn.41466 /UG_TITLE=ESTs, Weakly similar to STK1_RAT SULFOTRANSFERASE K1 (RSULT1C2) (R.norvegicus) AW252626 similar to Hypothetical protein MGC75664 RGD1561551 500359 XM_001074172 /// XM_575715 0008146 // sulfotransferase activity // inferred from electronic annotation 1390692_at BE105721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105721 /DB_XREF=gi:8497863 /DB_XREF=UI-R-BO1-asi-g-04-0-UI.s1 /CLONE=UI-R-BO1-asi-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.46765.1 /TIER=ConsEnd /STK=4 /UG=Rn.46765 /UG_TITLE=ESTs BE105721 CTP synthase Ctps 313560 NM_001134873 0006221 // pyrimidine nucleotide biosynthetic process // inferred from electronic annotation /// 0006241 // CTP biosynthetic process // inferred from electronic annotation /// 0006241 // CTP biosynthetic process // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0003883 // CTP synthase activity // inferred from electronic annotation /// 0003883 // CTP synthase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390693_at BF416413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416413 /DB_XREF=gi:11404402 /DB_XREF=UI-R-CA0-bks-c-09-0-UI.s1 /CLONE=UI-R-CA0-bks-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.26968.2 /TIER=ConsEnd /STK=4 /UG=Rn.26968 /UG_TITLE=ESTs BF416413 Hypothetical protein LOC689791 LOC689791 689791 1390694_at BF391611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391611 /DB_XREF=gi:11376464 /DB_XREF=UI-R-CA1-bcw-d-09-0-UI.s1 /CLONE=UI-R-CA1-bcw-d-09-0-UI /FEA=EST /CNT=4 /TID=Rn.50397.1 /TIER=ConsEnd /STK=4 /UG=Rn.50397 /UG_TITLE=ESTs BF391611 1390695_at BM385951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385951 /DB_XREF=gi:18186004 /DB_XREF=UI-R-DN1-ckf-k-14-0-UI.s1 /CLONE=UI-R-DN1-ckf-k-14-0-UI /FEA=EST /CNT=4 /TID=Rn.15991.1 /TIER=ConsEnd /STK=4 /UG=Rn.15991 /UG_TITLE=ESTs BM385951 1390696_at AI145010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145010 /DB_XREF=gi:3666809 /DB_XREF=UI-R-BT0-pr-c-09-0-UI.s1 /CLONE=UI-R-BT0-pr-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.19295.1 /TIER=ConsEnd /STK=4 /UG=Rn.19295 /UG_TITLE=ESTs AI145010 1390697_at BI278125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278125 /DB_XREF=gi:14924668 /DB_XREF=UI-R-CZ0-byd-f-05-0-UI.s1 /CLONE=UI-R-CZ0-byd-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.18700.1 /TIER=ConsEnd /STK=4 /UG=Rn.18700 /UG_TITLE=ESTs BI278125 gem (nuclear organelle) associated protein 8 Gemin8 363462 NM_001007756 0000387 // spliceosomal snRNP assembly // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0032797 // SMN complex // not recorded 0005515 // protein binding // not recorded 1390698_at BF395822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395822 /DB_XREF=gi:11380793 /DB_XREF=UI-R-BT1-bkc-f-09-0-UI.s1 /CLONE=UI-R-BT1-bkc-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.22587.1 /TIER=ConsEnd /STK=4 /UG=Rn.22587 /UG_TITLE=ESTs BF395822 1390699_at BF390453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390453 /DB_XREF=gi:11375299 /DB_XREF=UI-R-CA1-bch-c-05-0-UI.s1 /CLONE=UI-R-CA1-bch-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.41279.1 /TIER=ConsEnd /STK=4 /UG=Rn.41279 /UG_TITLE=ESTs BF390453 similar to KIAA2026 protein RGD1311595 309307 XM_001079649 /// XM_219779 1390700_s_at BG378690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378690 /DB_XREF=gi:13303162 /DB_XREF=UI-R-BT1-bnj-f-01-0-UI.s1 /CLONE=UI-R-BT1-bnj-f-01-0-UI /FEA=EST /CNT=4 /TID=Rn.62034.1 /TIER=ConsEnd /STK=4 /UG=Rn.62034 /UG_TITLE=ESTs BG378690 histone deacetylase 10 Hdac10 362981 NM_001035000 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006476 // protein deacetylation // not recorded /// 0014003 // oligodendrocyte development // inferred from expression pattern /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016575 // histone deacetylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004407 // histone deacetylase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0033558 // protein deacetylase activity // not recorded /// 0042826 // histone deacetylase binding // not recorded 1390701_at BG372551 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372551 /DB_XREF=gi:13269088 /DB_XREF=UI-R-CV1-brv-e-05-0-UI.s1 /CLONE=UI-R-CV1-brv-e-05-0-UI /FEA=EST /CNT=4 /TID=Rn.15581.1 /TIER=ConsEnd /STK=4 /UG=Rn.15581 /UG_TITLE=ESTs BG372551 1390702_at BF388219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388219 /DB_XREF=gi:11373043 /DB_XREF=UI-R-CA1-bca-f-10-0-UI.s1 /CLONE=UI-R-CA1-bca-f-10-0-UI /FEA=EST /CNT=4 /TID=Rn.62904.1 /TIER=ConsEnd /STK=4 /UG=Rn.62904 /UG_TITLE=ESTs BF388219 1390703_at AW251303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251303 /DB_XREF=gi:6594894 /DB_XREF=UI-R-BJ0-adg-f-01-0-UI.s1 /CLONE=UI-R-BJ0-adg-f-01-0-UI /FEA=EST /CNT=4 /TID=Rn.44659.1 /TIER=ConsEnd /STK=4 /UG=Rn.44659 /UG_TITLE=ESTs AW251303 1390704_at BF394953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394953 /DB_XREF=gi:11379914 /DB_XREF=UI-R-CA0-bgf-g-09-0-UI.s1 /CLONE=UI-R-CA0-bgf-g-09-0-UI /FEA=EST /CNT=4 /TID=Rn.61283.1 /TIER=ConsEnd /STK=4 /UG=Rn.61283 /UG_TITLE=ESTs, Weakly similar to T45027 hypothetical protein Y39B6B.a (imported) - Caenorhabditis elegans (C.elegans) BF394953 SDA1 domain containing 1 Sdad1 289504 NM_001006958 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390705_at BF401222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401222 /DB_XREF=gi:11389197 /DB_XREF=UI-R-CA0-bgq-a-08-0-UI.s1 /CLONE=UI-R-CA0-bgq-a-08-0-UI /FEA=EST /CNT=4 /TID=Rn.64301.1 /TIER=ConsEnd /STK=4 /UG=Rn.64301 /UG_TITLE=ESTs BF401222 tetratricopeptide repeat domain 34 Ttc34 366517 XM_001077214 /// XM_345615 0005488 // binding // inferred from electronic annotation 1390706_at BF392456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392456 /DB_XREF=gi:11377313 /DB_XREF=UI-R-CA0-bfj-d-10-0-UI.s1 /CLONE=UI-R-CA0-bfj-d-10-0-UI /FEA=EST /CNT=4 /TID=Rn.64390.1 /TIER=ConsEnd /STK=4 /UG=Rn.64390 /UG_TITLE=ESTs, Weakly similar to JE0271 beta spectrin, beta SpIII sigma1 - rat (R.norvegicus) BF392456 spectrin, beta, non-erythrocytic 1 Sptbn1 305614 NM_001013130 0007182 // common-partner SMAD protein phosphorylation // not recorded /// 0007182 // common-partner SMAD protein phosphorylation // inferred from electronic annotation /// 0007184 // SMAD protein nuclear translocation // not recorded /// 0007184 // SMAD protein nuclear translocation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008091 // spectrin // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // not recorded /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0032437 // cuticular plate // not recorded /// 0032437 // cuticular plate // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction 1390707_at BI281632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281632 /DB_XREF=gi:14931557 /DB_XREF=UI-R-CT0s-cau-f-07-0-UI.s1 /CLONE=UI-R-CT0s-cau-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.23957.1 /TIER=ConsEnd /STK=4 /UG=Rn.23957 /UG_TITLE=ESTs, Weakly similar to RGSC RAT REGULATOR OF G-PROTEIN SIGNALING 12 (R.norvegicus) BI281632 regulator of G-protein signaling 10 Rgs10 54290 NM_019337 0008277 // regulation of G-protein coupled receptor protein signaling pathway // traceable author statement /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390708_at AI012518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012518 /DB_XREF=gi:3226350 /DB_XREF=EST206969 /CLONE=RPLAY32 /FEA=EST /CNT=4 /TID=Rn.58985.1 /TIER=ConsEnd /STK=4 /UG=Rn.58985 /UG_TITLE=ESTs AI012518 1390709_at AI102364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102364 /DB_XREF=gi:3707154 /DB_XREF=EST211653 /CLONE=RBRCC59 /FEA=EST /CNT=4 /TID=Rn.21406.1 /TIER=ConsEnd /STK=4 /UG=Rn.21406 /UG_TITLE=ESTs AI102364 0006468 // protein phosphorylation // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1390710_x_at AA850618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850618 /DB_XREF=gi:4131865 /DB_XREF=EST193386 /FEA=EST /CNT=4 /TID=Rn.25122.1 /TIER=ConsEnd /STK=4 /UG=Rn.25122 /UG_TITLE=ESTs, Highly similar to T09123 hybrid receptor SorLA precursor - mouse (M.musculus) AA850618 sortilin-related receptor, LDLR class A repeats-containing Sorl1 300652 NM_053519 /// XM_001065506 /// XM_217115 0008283 // cell proliferation // inferred from expression pattern /// 0016477 // cell migration // inferred from mutant phenotype 0005771 // multivesicular body // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay 0030169 // low-density lipoprotein binding // not recorded 1390711_at AW535406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535406 /DB_XREF=gi:7177820 /DB_XREF=UI-R-BS0-aoe-g-10-0-UI.s1 /CLONE=UI-R-BS0-aoe-g-10-0-UI /FEA=EST /CNT=4 /TID=Rn.23599.1 /TIER=ConsEnd /STK=4 /UG=Rn.23599 /UG_TITLE=ESTs AW535406 1390712_at AW253742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253742 /DB_XREF=gi:6597333 /DB_XREF=UI-R-BJ0-aes-g-08-0-UI.s1 /CLONE=UI-R-BJ0-aes-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.44694.1 /TIER=ConsEnd /STK=4 /UG=Rn.44694 /UG_TITLE=ESTs, Highly similar to T00415 hypothetical protein H_248O15.1 (H.sapiens) AW253742 furry homolog (Drosophila) Fry 304244 NM_001170398 1390713_at BF410051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410051 /DB_XREF=gi:11398026 /DB_XREF=UI-R-CA1-bjt-a-01-0-UI.s1 /CLONE=UI-R-CA1-bjt-a-01-0-UI /FEA=EST /CNT=4 /TID=Rn.47100.1 /TIER=ConsEnd /STK=4 /UG=Rn.47100 /UG_TITLE=ESTs BF410051 1390714_at AI600086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600086 /DB_XREF=gi:4609134 /DB_XREF=EST251789 /CLONE=REMDQ84 /FEA=EST /CNT=4 /TID=Rn.40334.1 /TIER=ConsEnd /STK=4 /UG=Rn.40334 /UG_TITLE=ESTs AI600086 1390715_at BF396448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396448 /DB_XREF=gi:11381420 /DB_XREF=UI-R-BS2-bdy-c-07-0-UI.s1 /CLONE=UI-R-BS2-bdy-c-07-0-UI /FEA=EST /CNT=4 /TID=Rn.32120.1 /TIER=ConsEnd /STK=4 /UG=Rn.32120 /UG_TITLE=ESTs, Weakly similar to S50031 prostacyclin-stimulating factor (H.sapiens) BF396448 insulin-like growth factor binding protein-like 1 Igfbpl1 366366 NM_001108972 0001558 // regulation of cell growth // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005520 // insulin-like growth factor binding // inferred from electronic annotation 1390716_at BE098148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098148 /DB_XREF=gi:8490052 /DB_XREF=UI-R-BJ1-ata-h-03-0-UI.s1 /CLONE=UI-R-BJ1-ata-h-03-0-UI /FEA=EST /CNT=4 /TID=Rn.45210.1 /TIER=ConsEnd /STK=4 /UG=Rn.45210 /UG_TITLE=ESTs BE098148 1390717_at BM391963 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391963 /DB_XREF=gi:18192016 /DB_XREF=UI-R-DM1-ckc-p-11-0-UI.s2 /CLONE=UI-R-DM1-ckc-p-11-0-UI /FEA=EST /CNT=4 /TID=Rn.26683.1 /TIER=ConsEnd /STK=4 /UG=Rn.26683 /UG_TITLE=ESTs BM391963 cardiolipin synthase 1 Crls1 366196 NM_001014258 0008654 // phospholipid biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016780 // phosphotransferase activity, for other substituted phosphate groups // inferred from electronic annotation 1390718_at BE096865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096865 /DB_XREF=gi:8487796 /DB_XREF=UI-R-BO1-app-f-01-0-UI.s1 /CLONE=UI-R-BO1-app-f-01-0-UI /FEA=EST /CNT=4 /TID=Rn.63550.1 /TIER=ConsEnd /STK=4 /UG=Rn.63550 /UG_TITLE=ESTs BE096865 1390719_at BI294889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294889 /DB_XREF=gi:14957784 /DB_XREF=UI-R-DK0-ced-c-12-0-UI.s1 /CLONE=UI-R-DK0-ced-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.21735.1 /TIER=ConsEnd /STK=4 /UG=Rn.21735 /UG_TITLE=ESTs BI294889 1390720_at AI145419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145419 /DB_XREF=gi:3667218 /DB_XREF=UI-R-BT0-qe-g-12-0-UI.s1 /CLONE=UI-R-BT0-qe-g-12-0-UI /FEA=EST /CNT=4 /TID=Rn.47216.1 /TIER=ConsEnd /STK=4 /UG=Rn.47216 /UG_TITLE=ESTs, Highly similar to MCM4 MOUSE DNA REPLICATION LICENSING FACTOR MCM4 (M.musculus) AI145419 1390721_at AA817700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817700 /DB_XREF=gi:4198230 /DB_XREF=UI-R-A0-aa-d-04-0-UI.s1 /CLONE=UI-R-A0-aa-d-04-0-UI /FEA=EST /CNT=4 /TID=Rn.16373.1 /TIER=ConsEnd /STK=4 /UG=Rn.16373 /UG_TITLE=ESTs AA817700 1390722_at AW531272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531272 /DB_XREF=gi:7173686 /DB_XREF=UI-R-BS0-aml-g-08-0-UI.s1 /CLONE=UI-R-BS0-aml-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.22918.1 /TIER=ConsEnd /STK=4 /UG=Rn.22918 /UG_TITLE=ESTs AW531272 1390723_at BF386742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386742 /DB_XREF=gi:11371566 /DB_XREF=UI-R-CA1-bbg-h-09-0-UI.s1 /CLONE=UI-R-CA1-bbg-h-09-0-UI /FEA=EST /CNT=4 /TID=Rn.35097.1 /TIER=ConsEnd /STK=4 /UG=Rn.35097 /UG_TITLE=ESTs, Moderately similar to S33477 hypothetical protein 1 - rat (R.norvegicus) BF386742 1390724_at AW253006 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253006 /DB_XREF=gi:6596597 /DB_XREF=UI-R-BJ0-aeq-c-08-0-UI.s1 /CLONE=UI-R-BJ0-aeq-c-08-0-UI /FEA=EST /CNT=4 /TID=Rn.40842.1 /TIER=ConsEnd /STK=4 /UG=Rn.40842 /UG_TITLE=ESTs AW253006 1390725_at AI137962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137962 /DB_XREF=gi:3638739 /DB_XREF=UI-R-C0-hn-b-01-0-UI.s1 /CLONE=UI-R-C0-hn-b-01-0-UI /FEA=EST /CNT=4 /TID=Rn.40983.1 /TIER=ConsEnd /STK=4 /UG=Rn.40983 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) AI137962 1390726_at BF393120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393120 /DB_XREF=gi:11377980 /DB_XREF=UI-R-CA0-bfp-a-04-0-UI.s1 /CLONE=UI-R-CA0-bfp-a-04-0-UI /FEA=EST /CNT=4 /TID=Rn.48966.1 /TIER=ConsEnd /STK=4 /UG=Rn.48966 /UG_TITLE=ESTs BF393120 1390727_at BF398618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398618 /DB_XREF=gi:11383613 /DB_XREF=UI-R-BS2-beq-h-08-0-UI.s1 /CLONE=UI-R-BS2-beq-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.59127.1 /TIER=ConsEnd /STK=4 /UG=Rn.59127 /UG_TITLE=ESTs BF398618 1390728_at AI501517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501517 /DB_XREF=gi:4399368 /DB_XREF=UI-R-C2p-sc-a-03-0-UI.s1 /CLONE=UI-R-C2p-sc-a-03-0-UI /FEA=EST /CNT=4 /TID=Rn.32600.1 /TIER=ConsEnd /STK=4 /UG=Rn.32600 /UG_TITLE=ESTs AI501517 LIM domains containing 1 Limd1 316101 NM_001112737 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1390729_x_at BM391768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391768 /DB_XREF=gi:18191821 /DB_XREF=UI-R-DO1-cmk-c-21-0-UI.s1 /CLONE=UI-R-DO1-cmk-c-21-0-UI /FEA=EST /CNT=4 /TID=Rn.41947.1 /TIER=ConsEnd /STK=4 /UG=Rn.41947 /UG_TITLE=ESTs BM391768 cleavage and polyadenylation specific factor 7, 59kDa Cpsf7 365407 NM_001014245 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390730_at BM383911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383911 /DB_XREF=gi:18183964 /DB_XREF=UI-R-DM1-ckc-o-22-0-UI.s1 /CLONE=UI-R-DM1-ckc-o-22-0-UI /FEA=EST /CNT=4 /TID=Rn.38890.1 /TIER=ConsEnd /STK=4 /UG=Rn.38890 /UG_TITLE=ESTs BM383911 family with sequence similarity 58, member B Fam58b 303321 NM_001025412 0005515 // protein binding // inferred from electronic annotation 1390731_at BI288533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288533 /DB_XREF=gi:14945213 /DB_XREF=UI-R-DK0-cdg-a-05-0-UI.s1 /CLONE=UI-R-DK0-cdg-a-05-0-UI /FEA=EST /CNT=4 /TID=Rn.48004.1 /TIER=ConsEnd /STK=4 /UG=Rn.48004 /UG_TITLE=ESTs BI288533 1390732_at BI294940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294940 /DB_XREF=gi:14957886 /DB_XREF=UI-R-DK0-ced-h-05-0-UI.s1 /CLONE=UI-R-DK0-ced-h-05-0-UI /FEA=EST /CNT=4 /TID=Rn.49200.1 /TIER=ConsEnd /STK=4 /UG=Rn.49200 /UG_TITLE=ESTs BI294940 1390733_at BI275867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275867 /DB_XREF=gi:14920218 /DB_XREF=UI-R-CX0-bxh-e-04-0-UI.s1 /CLONE=UI-R-CX0-bxh-e-04-0-UI /FEA=EST /CNT=4 /TID=Rn.61863.1 /TIER=ConsEnd /STK=4 /UG=Rn.61863 /UG_TITLE=ESTs BI275867 1390734_at BI291369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291369 /DB_XREF=gi:14950847 /DB_XREF=UI-R-CV2-cgp-c-08-0-UI.s1 /CLONE=UI-R-CV2-cgp-c-08-0-UI /FEA=EST /CNT=4 /TID=Rn.66266.1 /TIER=ConsEnd /STK=4 /UG=Rn.66266 /UG_TITLE=ESTs BI291369 1390735_at BG375163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375163 /DB_XREF=gi:13299635 /DB_XREF=UI-R-CV1-bsx-h-03-0-UI.s1 /CLONE=UI-R-CV1-bsx-h-03-0-UI /FEA=EST /CNT=4 /TID=Rn.76407.1 /TIER=ConsEnd /STK=4 /UG=Rn.76407 /UG_TITLE=ESTs BG375163 1390736_at AW433743 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433743 /DB_XREF=gi:6965050 /DB_XREF=UI-R-BJ0p-afq-e-04-0-UI.s1 /CLONE=UI-R-BJ0p-afq-e-04-0-UI /FEA=EST /CNT=4 /TID=Rn.27373.1 /TIER=ConsEnd /STK=4 /UG=Rn.27373 /UG_TITLE=ESTs, Weakly similar to ZF94_RAT ZINC FINGER PROTEIN 94 (ZFP-94) (ZINC FINGER PROTEIN Y1) (RLZF-Y) (R.norvegicus) AW433743 zinc finger protein 668 Znf668 309002 NM_001107553 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1390737_at AI712996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712996 /DB_XREF=gi:5016796 /DB_XREF=UI-R-Y0-abc-a-05-0-UI.s1 /CLONE=UI-R-Y0-abc-a-05-0-UI /FEA=EST /CNT=4 /TID=Rn.41470.1 /TIER=ConsEnd /STK=4 /UG=Rn.41470 /UG_TITLE=ESTs AI712996 1390738_at BM385476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385476 /DB_XREF=gi:18185529 /DB_XREF=UI-R-CN1-clv-p-24-0-UI.s1 /CLONE=UI-R-CN1-clv-p-24-0-UI /FEA=EST /CNT=4 /TID=Rn.32168.1 /TIER=ConsEnd /STK=4 /UG=Rn.32168 /UG_TITLE=ESTs BM385476 bone marrow stromal cell antigen 2 Bst2 378947 NM_198134 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0051607 // defense response to virus // not recorded 0005622 // intracellular // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0044459 // plasma membrane part // not recorded 0004871 // signal transducer activity // not recorded /// 0042803 // protein homodimerization activity // not recorded 1390739_at BE118828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118828 /DB_XREF=gi:8510933 /DB_XREF=UI-R-BS1-azv-c-02-0-UI.s1 /CLONE=UI-R-BS1-azv-c-02-0-UI /FEA=EST /CNT=4 /TID=Rn.63559.1 /TIER=ConsEnd /STK=4 /UG=Rn.63559 /UG_TITLE=ESTs BE118828 zinc finger protein 609 Znf609 363412 NM_001173371 /// XM_001076726 /// XM_343738 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1390740_at BF401709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401709 /DB_XREF=gi:11389684 /DB_XREF=UI-R-CA0-bgn-g-03-0-UI.s1 /CLONE=UI-R-CA0-bgn-g-03-0-UI /FEA=EST /CNT=4 /TID=Rn.51287.1 /TIER=ConsEnd /STK=4 /UG=Rn.51287 /UG_TITLE=ESTs BF401709 1390741_at BI294610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294610 /DB_XREF=gi:14957230 /DB_XREF=UI-R-DK0-cem-d-12-0-UI.s1 /CLONE=UI-R-DK0-cem-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.41117.1 /TIER=ConsEnd /STK=4 /UG=Rn.41117 /UG_TITLE=ESTs, Weakly similar to T14343 zinc finger RNA binding protein, chromosome-associated - mouse (M.musculus) BI294610 Similar to KIAA1086 protein RGD1304737 314639 XM_001070148 /// XM_234923 0006955 // immune response // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1390742_at BF404359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404359 /DB_XREF=gi:11392334 /DB_XREF=UI-R-CA1-bie-b-11-0-UI.s1 /CLONE=UI-R-CA1-bie-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.60752.1 /TIER=ConsEnd /STK=4 /UG=Rn.60752 /UG_TITLE=ESTs BF404359 1390743_at BF405616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405616 /DB_XREF=gi:11393591 /DB_XREF=UI-R-CA1-bix-m-06-0-UI.s1 /CLONE=UI-R-CA1-bix-m-06-0-UI /FEA=EST /CNT=4 /TID=Rn.60798.1 /TIER=ConsEnd /STK=4 /UG=Rn.60798 /UG_TITLE=ESTs BF405616 1390744_at BF399664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399664 /DB_XREF=gi:11384674 /DB_XREF=UI-R-CA0-bhx-a-05-0-UI.s1 /CLONE=UI-R-CA0-bhx-a-05-0-UI /FEA=EST /CNT=4 /TID=Rn.63063.1 /TIER=ConsEnd /STK=4 /UG=Rn.63063 /UG_TITLE=ESTs BF399664 1390745_at BF417914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417914 /DB_XREF=gi:11405903 /DB_XREF=UI-R-CA1-blu-h-03-0-UI.s1 /CLONE=UI-R-CA1-blu-h-03-0-UI /FEA=EST /CNT=4 /TID=Rn.63286.1 /TIER=ConsEnd /STK=4 /UG=Rn.63286 /UG_TITLE=ESTs BF417914 1390746_at BE112048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112048 /DB_XREF=gi:8504118 /DB_XREF=UI-R-BJ1-ave-f-08-0-UI.s1 /CLONE=UI-R-BJ1-ave-f-08-0-UI /FEA=EST /CNT=4 /TID=Rn.48957.1 /TIER=ConsEnd /STK=4 /UG=Rn.48957 /UG_TITLE=ESTs BE112048 1390747_at BF412714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412714 /DB_XREF=gi:11400703 /DB_XREF=UI-R-BT1-bnt-c-12-0-UI.s1 /CLONE=UI-R-BT1-bnt-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.50933.1 /TIER=ConsEnd /STK=4 /UG=Rn.50933 /UG_TITLE=ESTs BF412714 1390748_at BF405352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405352 /DB_XREF=gi:11393327 /DB_XREF=UI-R-CA1-bit-b-08-0-UI.s1 /CLONE=UI-R-CA1-bit-b-08-0-UI /FEA=EST /CNT=4 /TID=Rn.57831.1 /TIER=ConsEnd /STK=4 /UG=Rn.57831 /UG_TITLE=ESTs BF405352 1390749_at BF394188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394188 /DB_XREF=gi:11379052 /DB_XREF=UI-R-CA0-bhb-c-05-0-UI.s1 /CLONE=UI-R-CA0-bhb-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.61184.1 /TIER=ConsEnd /STK=4 /UG=Rn.61184 /UG_TITLE=ESTs BF394188 1390750_at BF392929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392929 /DB_XREF=gi:11377788 /DB_XREF=UI-R-CA0-bfq-h-03-0-UI.s1 /CLONE=UI-R-CA0-bfq-h-03-0-UI /FEA=EST /CNT=4 /TID=Rn.62447.1 /TIER=ConsEnd /STK=4 /UG=Rn.62447 /UG_TITLE=ESTs BF392929 1390751_at BF415798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415798 /DB_XREF=gi:11403787 /DB_XREF=UI-R-CA1-bkf-a-07-0-UI.s1 /CLONE=UI-R-CA1-bkf-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.62817.1 /TIER=ConsEnd /STK=4 /UG=Rn.62817 /UG_TITLE=ESTs BF415798 1390752_at BF409834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409834 /DB_XREF=gi:11397809 /DB_XREF=UI-R-CA1-bjr-d-01-0-UI.s1 /CLONE=UI-R-CA1-bjr-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.63105.1 /TIER=ConsEnd /STK=4 /UG=Rn.63105 /UG_TITLE=ESTs BF409834 1390753_at BF419721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419721 /DB_XREF=gi:11407710 /DB_XREF=UI-R-CA0-bpf-e-02-0-UI.s1 /CLONE=UI-R-CA0-bpf-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.63618.1 /TIER=ConsEnd /STK=4 /UG=Rn.63618 /UG_TITLE=ESTs BF419721 1390754_at BF412921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412921 /DB_XREF=gi:11400910 /DB_XREF=UI-R-CA0-boc-d-04-0-UI.s1 /CLONE=UI-R-CA0-boc-d-04-0-UI /FEA=EST /CNT=4 /TID=Rn.64200.1 /TIER=ConsEnd /STK=4 /UG=Rn.64200 /UG_TITLE=ESTs, Highly similar to I84505 calcium-dependent actin-binding protein - rat (R.norvegicus) BF412921 Ca++-dependent secretion activator Cadps 26989 NM_013219 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // not recorded /// 0006887 // exocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016050 // vesicle organization // not recorded /// 0045055 // regulated secretory pathway // traceable author statement /// 0045956 // positive regulation of calcium ion-dependent exocytosis // inferred from mutant phenotype /// 0050432 // catecholamine secretion // not recorded 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0045202 // synapse // inferred from electronic annotation 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390755_at BE105876 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105876 /DB_XREF=gi:8497978 /DB_XREF=UI-R-BO1-asj-c-03-0-UI.s1 /CLONE=UI-R-BO1-asj-c-03-0-UI /FEA=EST /CNT=4 /TID=Rn.12493.1 /TIER=ConsEnd /STK=4 /UG=Rn.12493 /UG_TITLE=ESTs BE105876 secretion regulating guanine nucleotide exchange factor Sergef 365243 XM_001080802 /// XM_344891 0050709 // negative regulation of protein secretion // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded 1390756_at BF401379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401379 /DB_XREF=gi:11389354 /DB_XREF=UI-R-CA0-bgt-a-01-0-UI.s1 /CLONE=UI-R-CA0-bgt-a-01-0-UI /FEA=EST /CNT=4 /TID=Rn.44894.1 /TIER=ConsEnd /STK=4 /UG=Rn.44894 /UG_TITLE=ESTs, Weakly similar to TED_HUMAN TED PROTEIN (H.sapiens) BF401379 family with sequence similarity 155, member A Fam155a 498667 XM_001076507 /// XM_573950 0005488 // binding // inferred from electronic annotation 1390757_at BE116564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116564 /DB_XREF=gi:8508669 /DB_XREF=UI-R-BS1-ayj-f-12-0-UI.s1 /CLONE=UI-R-BS1-ayj-f-12-0-UI /FEA=EST /CNT=4 /TID=Rn.53962.1 /TIER=ConsEnd /STK=4 /UG=Rn.53962 /UG_TITLE=ESTs, Highly similar to A55817 cyclin-dependent kinase p130-PITSLRE - mouse (M.musculus) BE116564 0006468 // protein phosphorylation // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1390758_at BF393473 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393473 /DB_XREF=gi:11378334 /DB_XREF=UI-R-CA0-bfu-c-10-0-UI.s1 /CLONE=UI-R-CA0-bfu-c-10-0-UI /FEA=EST /CNT=4 /TID=Rn.57425.1 /TIER=ConsEnd /STK=4 /UG=Rn.57425 /UG_TITLE=ESTs BF393473 1390759_at BF399309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399309 /DB_XREF=gi:11384313 /DB_XREF=UI-R-CA1-bjb-a-04-0-UI.s1 /CLONE=UI-R-CA1-bjb-a-04-0-UI /FEA=EST /CNT=4 /TID=Rn.58130.1 /TIER=ConsEnd /STK=4 /UG=Rn.58130 /UG_TITLE=ESTs BF399309 1390760_at BF411923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411923 /DB_XREF=gi:11399952 /DB_XREF=UI-R-BT1-bmx-f-09-0-UI.s1 /CLONE=UI-R-BT1-bmx-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.64361.1 /TIER=ConsEnd /STK=4 /UG=Rn.64361 /UG_TITLE=ESTs BF411923 1390761_at BF403233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403233 /DB_XREF=gi:11391208 /DB_XREF=UI-R-CA1-biy-e-01-0-UI.s1 /CLONE=UI-R-CA1-biy-e-01-0-UI /FEA=EST /CNT=4 /TID=Rn.57287.1 /TIER=ConsEnd /STK=4 /UG=Rn.57287 /UG_TITLE=ESTs BF403233 1390762_at BE103006 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103006 /DB_XREF=gi:8495105 /DB_XREF=UI-R-BT1-aqr-b-11-0-UI.s1 /CLONE=UI-R-BT1-aqr-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.16204.1 /TIER=ConsEnd /STK=4 /UG=Rn.16204 /UG_TITLE=ESTs BE103006 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 Cbfa2t2 296293 NM_001168542 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1390763_at BF555727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555727 /DB_XREF=gi:11665457 /DB_XREF=UI-R-A1-dv-f-03-0-UI.r1 /CLONE=UI-R-A1-dv-f-03-0-UI /FEA=EST /CNT=4 /TID=Rn.15175.1 /TIER=ConsEnd /STK=4 /UG=Rn.15175 /UG_TITLE=ESTs BF555727 1390764_at BF420611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420611 /DB_XREF=gi:11408600 /DB_XREF=UI-R-BJ2-bpy-a-11-0-UI.s1 /CLONE=UI-R-BJ2-bpy-a-11-0-UI /FEA=EST /CNT=4 /TID=Rn.64249.1 /TIER=ConsEnd /STK=4 /UG=Rn.64249 /UG_TITLE=ESTs, Weakly similar to RENAL TRANSCRIPTION FACTOR KID-1 (R.norvegicus) BF420611 zinc finger protein 324 Zfp324 365192 XM_001055374 /// XM_344862 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390765_at AI411527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411527 /DB_XREF=gi:4255031 /DB_XREF=EST239821 /CLONE=RKIEK49 /FEA=EST /CNT=4 /TID=Rn.3023.1 /TIER=ConsEnd /STK=4 /UG=Rn.3023 /UG_TITLE=ESTs, Weakly similar to WDNM1 PROTEIN PRECURSOR (R.norvegicus) AI411527 WAP four-disulfide core domain 2 Wfdc2 286888 NM_173109 0005576 // extracellular region // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1390766_at AI137249 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137249 /DB_XREF=gi:3638026 /DB_XREF=UI-R-C2p-ok-c-01-0-UI.s1 /CLONE=UI-R-C2p-ok-c-01-0-UI /FEA=EST /CNT=4 /TID=Rn.27364.1 /TIER=ConsEnd /STK=4 /UG=Rn.27364 /UG_TITLE=ESTs, Moderately similar to 0812252A tubulin alpha (R.norvegicus) AI137249 tubulin, alpha 8 Tuba8 500377 NM_001024339 0007017 // microtubule-based process // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1390767_at BF391148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391148 /DB_XREF=gi:11375995 /DB_XREF=UI-R-CA1-bcd-g-10-0-UI.s1 /CLONE=UI-R-CA1-bcd-g-10-0-UI /FEA=EST /CNT=4 /TID=Rn.21446.1 /TIER=ConsEnd /STK=4 /UG=Rn.21446 /UG_TITLE=ESTs, Highly similar to I38246 signal sequence receptor alpha chain precursor (H.sapiens) BF391148 signal sequence receptor, alpha Ssr1 361233 NM_001008891 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1390768_at BF399726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399726 /DB_XREF=gi:11384736 /DB_XREF=UI-R-CA0-bhx-g-09-0-UI.s1 /CLONE=UI-R-CA0-bhx-g-09-0-UI /FEA=EST /CNT=4 /TID=Rn.48984.1 /TIER=ConsEnd /STK=4 /UG=Rn.48984 /UG_TITLE=ESTs BF399726 Signal-induced proliferation-associated 1 like 2 Sipa1l2 361442 NM_001009704 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1390769_at AI535312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535312 /DB_XREF=gi:4449447 /DB_XREF=UI-R-C3-sw-c-08-0-UI.s1 /CLONE=UI-R-C3-sw-c-08-0-UI /FEA=EST /CNT=4 /TID=Rn.44128.1 /TIER=ConsEnd /STK=4 /UG=Rn.44128 /UG_TITLE=ESTs AI535312 Ribose-phosphate pyrophosphokinase I -like LOC314140 314140 NM_001009694 0006167 // AMP biosynthetic process // inferred from direct assay /// 0009116 // nucleoside metabolic process // inferred from electronic annotation /// 0009156 // ribonucleoside monophosphate biosynthetic process // inferred from electronic annotation /// 0009165 // nucleotide biosynthetic process // inferred from electronic annotation /// 0009165 // nucleotide biosynthetic process // inferred from direct assay /// 0019693 // ribose phosphate metabolic process // inferred from direct assay /// 0031100 // organ regeneration // inferred from expression pattern /// 0044249 // cellular biosynthetic process // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0004749 // ribose phosphate diphosphokinase activity // inferred from electronic annotation /// 0004749 // ribose phosphate diphosphokinase activity // inferred from direct assay /// 0004749 // ribose phosphate diphosphokinase activity // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005529 // sugar binding // inferred from direct assay /// 0016208 // AMP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019003 // GDP binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0043531 // ADP binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1390770_at BF396139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396139 /DB_XREF=gi:11381111 /DB_XREF=UI-R-CA1-bcb-g-05-0-UI.s1 /CLONE=UI-R-CA1-bcb-g-05-0-UI /FEA=EST /CNT=4 /TID=Rn.12287.1 /TIER=ConsEnd /STK=4 /UG=Rn.12287 /UG_TITLE=ESTs BF396139 1390771_at BI298646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298646 /DB_XREF=gi:14974926 /DB_XREF=UI-R-CV2-chm-b-02-0-UI.s1 /CLONE=UI-R-CV2-chm-b-02-0-UI /FEA=EST /CNT=4 /TID=Rn.73054.1 /TIER=ConsEnd /STK=4 /UG=Rn.73054 /UG_TITLE=ESTs, Highly similar to retinoic acid receptor alpha2 (R.norvegicus) BI298646 retinoic acid receptor, gamma Rarg 685072 NM_001135249 /// NM_001135250 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0032331 // negative regulation of chondrocyte differentiation // not recorded /// 0032526 // response to retinoic acid // not recorded /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043068 // positive regulation of programmed cell death // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048048 // embryonic eye morphogenesis // not recorded /// 0048384 // retinoic acid receptor signaling pathway // not recorded /// 0048608 // reproductive structure development // not recorded /// 0048732 // gland development // not recorded /// 0060349 // bone morphogenesis // not recorded /// 0060429 // epithelium development // not recorded /// 0060534 // trachea cartilage development // not recorded /// 0060740 // prostate gland epithelium morphogenesis // not recorded /// 0061037 // negative regulation of cartilage development // not recorded /// 0070384 // Harderian gland development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0003708 // retinoic acid receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // not recorded 1390772_at AI711085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711085 /DB_XREF=gi:5000861 /DB_XREF=UI-R-AD1-zo-a-03-0-UI.s1 /CLONE=UI-R-AD1-zo-a-03-0-UI /FEA=EST /CNT=4 /TID=Rn.40332.1 /TIER=ConsEnd /STK=4 /UG=Rn.40332 /UG_TITLE=ESTs, Weakly similar to PMX1 MOUSE PAIRED MESODERM HOMEOBOX PROTEIN 1 (R.norvegicus) AI711085 Paired related homeobox 2 Prrx2 113931 NM_001105739 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0042474 // middle ear morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045880 // positive regulation of smoothened signaling pathway // not recorded /// 0048701 // embryonic cranial skeleton morphogenesis // not recorded /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048844 // artery morphogenesis // not recorded /// 0051216 // cartilage development // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1390773_s_at BF400794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400794 /DB_XREF=gi:11388809 /DB_XREF=UI-R-CA0-bhg-c-07-0-UI.s1 /CLONE=UI-R-CA0-bhg-c-07-0-UI /FEA=EST /CNT=4 /TID=Rn.62712.1 /TIER=ConsEnd /STK=4 /UG=Rn.62712 /UG_TITLE=ESTs BF400794 ankyrin repeat domain 60 Ankrd60 296417 XM_001054773 /// XM_001071433 1390774_at BE100170 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100170 /DB_XREF=gi:8492058 /DB_XREF=UI-R-BJ1-ats-e-06-0-UI.s1 /CLONE=UI-R-BJ1-ats-e-06-0-UI /FEA=EST /CNT=4 /TID=Rn.39373.1 /TIER=ConsEnd /STK=4 /UG=Rn.39373 /UG_TITLE=ESTs, Highly similar to I5P1_HUMAN TYPE I INOSITOL-1,4,5-TRISPHOSPHATE 5-PHOSPHATASE (H.sapiens) BE100170 Inositol polyphosphate-5-phosphatase A Inpp5a 365382 NM_001108923 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0042731 // PH domain binding // not recorded 1390775_at AW254382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254382 /DB_XREF=gi:6597973 /DB_XREF=UI-R-BJ0-aei-c-03-0-UI.s1 /CLONE=UI-R-BJ0-aei-c-03-0-UI /FEA=EST /CNT=4 /TID=Rn.11435.1 /TIER=ConsEnd /STK=4 /UG=Rn.11435 /UG_TITLE=ESTs, Weakly similar to polypeptide GalNAc transferase T1 (Rattus norvegicus) (R.norvegicus) AW254382 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2) Galnt2 292090 NM_001106196 0002378 // immunoglobulin biosynthetic process // not recorded /// 0002378 // immunoglobulin biosynthetic process // inferred from electronic annotation /// 0018242 // protein O-linked glycosylation via serine // not recorded /// 0018242 // protein O-linked glycosylation via serine // inferred from electronic annotation /// 0018243 // protein O-linked glycosylation via threonine // not recorded /// 0018243 // protein O-linked glycosylation via threonine // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005795 // Golgi stack // not recorded /// 0005795 // Golgi stack // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // not recorded /// 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030145 // manganese ion binding // not recorded /// 0030145 // manganese ion binding // inferred from electronic annotation 1390776_at AI030203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030203 /DB_XREF=gi:3248029 /DB_XREF=UI-R-C0-it-h-11-0-UI.s1 /CLONE=UI-R-C0-it-h-11-0-UI /FEA=EST /CNT=16 /TID=Rn.22133.1 /TIER=ConsEnd /STK=3 /UG=Rn.22133 /UG_TITLE=ESTs, Highly similar to IRX3 MOUSE IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX-3 (M.musculus) AI030203 iroquois homeobox 3 Irx3 307721 NM_001107413 0001656 // metanephros development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007498 // mesoderm development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0072047 // proximal/distal pattern formation involved in nephron development // not recorded /// 0072086 // specification of loop of Henle identity // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1390777_at AI710051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI710051 /DB_XREF=gi:4999827 /DB_XREF=UI-R-C3-tm-h-08-0-UI.s1 /CLONE=UI-R-C3-tm-h-08-0-UI /FEA=EST /CNT=14 /TID=Rn.7201.1 /TIER=ConsEnd /STK=3 /UG=Rn.7201 /UG_TITLE=ESTs AI710051 sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like Sc5dl 114100 NM_053642 0006631 // fatty acid metabolic process // traceable author statement /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0033490 // cholesterol biosynthetic process via lathosterol // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000248 // C-5 sterol desaturase activity // inferred from direct assay /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050046 // lathosterol oxidase activity // traceable author statement 1390778_at AI556731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556731 /DB_XREF=gi:4489094 /DB_XREF=UI-R-C2p-rj-g-11-0-UI.s1 /CLONE=UI-R-C2p-rj-g-11-0-UI /FEA=EST /CNT=13 /TID=Rn.23150.1 /TIER=ConsEnd /STK=3 /UG=Rn.23150 /UG_TITLE=ESTs AI556731 1390779_at AA818912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818912 /DB_XREF=gi:4227584 /DB_XREF=UI-R-A0-as-a-11-0-UI.s1 /CLONE=UI-R-A0-as-a-11-0-UI /FEA=EST /CNT=13 /TID=Rn.16562.1 /TIER=ConsEnd /STK=3 /UG=Rn.16562 /UG_TITLE=ESTs AA818912 1390780_at BE097313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097313 /DB_XREF=gi:8488244 /DB_XREF=UI-R-BO1-apv-h-05-0-UI.s1 /CLONE=UI-R-BO1-apv-h-05-0-UI /FEA=EST /CNT=14 /TID=Rn.46995.1 /TIER=ConsEnd /STK=3 /UG=Rn.46995 /UG_TITLE=ESTs, Weakly similar to slit (Drosophila) homolog 3 (Rattus norvegicus) (R.norvegicus) BE097313 Leucine rich repeat containing 3B Lrrc3b 305705 XM_002725036 /// XM_002728176 0005515 // protein binding // inferred from electronic annotation 1390781_at AA900411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900411 /DB_XREF=gi:4232903 /DB_XREF=UI-R-E0-dl-e-09-0-UI.s1 /CLONE=UI-R-E0-dl-e-09-0-UI /FEA=EST /CNT=11 /TID=Rn.22937.1 /TIER=ConsEnd /STK=3 /UG=Rn.22937 /UG_TITLE=ESTs, Weakly similar to R6RT37 ribosomal protein L37, cytosolic (validated) - rat (R.norvegicus) AA900411 ATP-binding cassette, sub-family B (MDR/TAP), member 10 Abcb10 361439 NM_001012166 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032592 // integral to mitochondrial membrane // inferred from electronic annotation /// 0032592 // integral to mitochondrial membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1390782_at BI295930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295930 /DB_XREF=gi:14959868 /DB_XREF=UI-R-DK0-cfc-d-09-0-UI.s1 /CLONE=UI-R-DK0-cfc-d-09-0-UI /FEA=EST /CNT=18 /TID=Rn.3962.1 /TIER=ConsEnd /STK=3 /UG=Rn.3962 /UG_TITLE=ESTs BI295930 C-type lectin domain family 14, member a Clec14a 314148 NM_001014077 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1390783_at BG671264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671264 /DB_XREF=gi:13893363 /DB_XREF=DRNBNG03 /CLONE=DRNBNG03 /FEA=EST /CNT=14 /TID=Rn.22789.1 /TIER=ConsEnd /STK=3 /UG=Rn.22789 /UG_TITLE=ESTs, Weakly similar to ABC2 MOUSE ATP-BINDING CASSETTE TRANSPORTER 2 (M.musculus) BG671264 ATP-binding cassette, sub-family A (ABC1), member 8a Abca8a 303638 XM_001081603 /// XM_221100 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation 1390784_at BG662814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG662814 /DB_XREF=gi:13884736 /DB_XREF=DRA03H04 /CLONE=DRA03H04 /FEA=EST /CNT=11 /TID=Rn.17426.1 /TIER=ConsEnd /STK=3 /UG=Rn.17426 /UG_TITLE=ESTs BG662814 WD repeat domain 37 Wdr37 307075 NM_001107362 1390785_at AI232339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232339 /DB_XREF=gi:3816219 /DB_XREF=EST229027 /CLONE=RKICA41 /FEA=EST /CNT=14 /TID=Rn.25112.1 /TIER=ConsEnd /STK=3 /UG=Rn.25112 /UG_TITLE=ESTs AI232339 UBX domain protein 2A Ubxn2a 685859 NM_001109482 1390786_at BE099756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099756 /DB_XREF=gi:8491636 /DB_XREF=UI-R-BJ1-atk-h-07-0-UI.s1 /CLONE=UI-R-BJ1-atk-h-07-0-UI /FEA=EST /CNT=12 /TID=Rn.12255.1 /TIER=ConsEnd /STK=3 /UG=Rn.12255 /UG_TITLE=ESTs BE099756 rho/rac guanine nucleotide exchange factor (GEF) 2 Arhgef2 310635 NM_001012079 0000132 // establishment of mitotic spindle orientation // inferred from electronic annotation /// 0000132 // establishment of mitotic spindle orientation // not recorded /// 0000902 // cell morphogenesis // not recorded /// 0000902 // cell morphogenesis // inferred from sequence or structural similarity /// 0006915 // apoptosis // not recorded /// 0007015 // actin filament organization // not recorded /// 0007015 // actin filament organization // inferred from sequence or structural similarity /// 0007026 // negative regulation of microtubule depolymerization // not recorded /// 0007026 // negative regulation of microtubule depolymerization // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // not recorded /// 0050768 // negative regulation of neurogenesis // inferred from electronic annotation /// 0050768 // negative regulation of neurogenesis // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // not recorded /// 0005874 // microtubule // inferred from sequence or structural similarity /// 0005874 // microtubule // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0032587 // ruffle membrane // not recorded /// 0032587 // ruffle membrane // inferred from sequence or structural similarity /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043198 // dendritic shaft // inferred from electronic annotation /// 0043198 // dendritic shaft // not recorded 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // not recorded /// 0008017 // microtubule binding // inferred from sequence or structural similarity /// 0017048 // Rho GTPase binding // not recorded /// 0017048 // Rho GTPase binding // inferred from sequence or structural similarity /// 0030676 // Rac guanyl-nucleotide exchange factor activity // not recorded /// 0030676 // Rac guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048365 // Rac GTPase binding // not recorded /// 0048365 // Rac GTPase binding // inferred from sequence or structural similarity 1390787_at AI103988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103988 /DB_XREF=gi:3708445 /DB_XREF=EST213277 /CLONE=RHEBV93 /FEA=EST /CNT=10 /TID=Rn.24856.1 /TIER=ConsEnd /STK=3 /UG=Rn.24856 /UG_TITLE=ESTs, Highly similar to I67805 purine synthesis multifunctional protein - mouse (M.musculus) AI103988 phosphoribosylglycinamide formyltransferase Gart 288259 NM_001011899 0006164 // purine nucleotide biosynthetic process // inferred from electronic annotation /// 0009113 // purine base biosynthetic process // inferred from electronic annotation /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // not recorded /// 0010033 // response to organic substance // inferred from direct assay /// 0010035 // response to inorganic substance // inferred from direct assay /// 0048513 // organ development // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004637 // phosphoribosylamine-glycine ligase activity // inferred from electronic annotation /// 0004644 // phosphoribosylglycinamide formyltransferase activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1390788_a_at AI407932 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407932 /DB_XREF=gi:4251436 /DB_XREF=EST236222 /CLONE=ROVEE38 /FEA=EST /CNT=10 /TID=Rn.24770.1 /TIER=ConsEnd /STK=3 /UG=Rn.24770 /UG_TITLE=ESTs, Weakly similar to T26935 hypothetical protein Y45F10D.8 - Caenorhabditis elegans (C.elegans) AI407932 similar to WD repeat domain 36 LOC688637 688637 XM_001067706 /// XM_002725323 0006364 // rRNA processing // inferred from electronic annotation 0032040 // small-subunit processome // inferred from electronic annotation 1390789_at BI296347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296347 /DB_XREF=gi:14960689 /DB_XREF=UI-R-DK0-cez-c-10-0-UI.s1 /CLONE=UI-R-DK0-cez-c-10-0-UI /FEA=EST /CNT=9 /TID=Rn.8651.1 /TIER=ConsEnd /STK=3 /UG=Rn.8651 /UG_TITLE=ESTs, Weakly similar to B30605 acyl-CoA dehydrogenase (R.norvegicus) BI296347 acyl-Coenzyme A dehydrogenase family, member 11 Acad11 315973 NM_001108181 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation 0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1390790_a_at AA964219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964219 /DB_XREF=gi:4279095 /DB_XREF=UI-R-E1-gl-a-07-0-UI.s1 /CLONE=UI-R-E1-gl-a-07-0-UI /FEA=EST /CNT=1 /TID=Rn.12017.2 /TIER=ConsEnd /STK=1 /UG=Rn.12017 /UG_TITLE=ESTs AA964219 1390791_at AI172537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172537 /DB_XREF=gi:3712577 /DB_XREF=UI-R-C2p-nu-h-04-0-UI.s1 /CLONE=UI-R-C2p-nu-h-04-0-UI /FEA=EST /CNT=9 /TID=Rn.22169.1 /TIER=ConsEnd /STK=3 /UG=Rn.22169 /UG_TITLE=ESTs AI172537 growth arrest-specific 2 like 1 Gas2l1 360973 NM_001108365 0007050 // cell cycle arrest // inferred from electronic annotation 1390792_a_at AI406827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406827 /DB_XREF=gi:4250331 /DB_XREF=EST235114 /CLONE=RBRDI92 /FEA=EST /CNT=11 /TID=Rn.8671.1 /TIER=ConsEnd /STK=3 /UG=Rn.8671 /UG_TITLE=ESTs AI406827 1390793_at BI295759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295759 /DB_XREF=gi:14959528 /DB_XREF=UI-R-DK0-cfa-c-06-0-UI.s1 /CLONE=UI-R-DK0-cfa-c-06-0-UI /FEA=EST /CNT=11 /TID=Rn.22216.1 /TIER=ConsEnd /STK=3 /UG=Rn.22216 /UG_TITLE=ESTs, Highly similar to S145_HUMAN SPLICEOSOME ASSOCIATED PROTEIN 145 (H.sapiens) BI295759 tetratricopeptide repeat domain 33 Ttc33 294774 NM_001106414 0005488 // binding // inferred from electronic annotation 1390794_at BI289098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289098 /DB_XREF=gi:14946318 /DB_XREF=UI-R-DK0-cfe-e-03-0-UI.s1 /CLONE=UI-R-DK0-cfe-e-03-0-UI /FEA=EST /CNT=10 /TID=Rn.21036.1 /TIER=ConsEnd /STK=3 /UG=Rn.21036 /UG_TITLE=ESTs, Moderately similar to peptide deformylase-like protein (Homo sapiens) (H.sapiens) BI289098 peptide deformylase-like protein-like LOC100363967 100363967 XM_002725412 1390795_at AI029455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029455 /DB_XREF=gi:4298683 /DB_XREF=UI-R-C0-ir-g-01-0-UI.s1 /CLONE=UI-R-C0-ir-g-01-0-UI /FEA=EST /CNT=9 /TID=Rn.64565.1 /TIER=ConsEnd /STK=3 /UG=Rn.64565 /UG_TITLE=ESTs AI029455 1390796_at AA998424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998424 /DB_XREF=gi:4289762 /DB_XREF=UI-R-C0-ia-g-05-0-UI.s1 /CLONE=UI-R-C0-ia-g-05-0-UI /FEA=EST /CNT=9 /TID=Rn.9587.1 /TIER=ConsEnd /STK=3 /UG=Rn.9587 /UG_TITLE=ESTs AA998424 hypothetical protein LOC688211 LOC688211 688211 XM_001081514 1390797_at BF282471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282471 /DB_XREF=gi:11213541 /DB_XREF=EST447062 /CLONE=RGIDN76 /FEA=EST /CNT=8 /TID=Rn.1057.1 /TIER=ConsEnd /STK=3 /UG=Rn.1057 /UG_TITLE=ESTs BF282471 lymphocyte cytosolic protein 2 Lcp2 155918 NM_130421 0045576 // mast cell activation // not recorded /// 0050663 // cytokine secretion // not recorded 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390798_at BF288130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288130 /DB_XREF=gi:11219200 /DB_XREF=EST452721 /CLONE=RGIGP87 /FEA=EST /CNT=8 /TID=Rn.14233.1 /TIER=ConsEnd /STK=3 /UG=Rn.14233 /UG_TITLE=ESTs BF288130 protein tyrosine phosphatase, receptor type, C Ptprc 24699 NM_001109887 /// NM_001109888 /// NM_001109889 /// NM_001109890 /// NM_138507 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0001915 // negative regulation of T cell mediated cytotoxicity // not recorded /// 0001915 // negative regulation of T cell mediated cytotoxicity // inferred from sequence or structural similarity /// 0001916 // positive regulation of T cell mediated cytotoxicity // inferred from electronic annotation /// 0001916 // positive regulation of T cell mediated cytotoxicity // not recorded /// 0001960 // negative regulation of cytokine-mediated signaling pathway // not recorded /// 0001960 // negative regulation of cytokine-mediated signaling pathway // inferred from sequence or structural similarity /// 0002378 // immunoglobulin biosynthetic process // inferred from electronic annotation /// 0002378 // immunoglobulin biosynthetic process // not recorded /// 0002711 // positive regulation of T cell mediated immunity // not recorded /// 0002711 // positive regulation of T cell mediated immunity // inferred from electronic annotation /// 0002923 // regulation of humoral immune response mediated by circulating immunoglobulin // not recorded /// 0002923 // regulation of humoral immune response mediated by circulating immunoglobulin // inferred from electronic annotation /// 0002925 // positive regulation of humoral immune response mediated by circulating immunoglobulin // inferred from electronic annotation /// 0002925 // positive regulation of humoral immune response mediated by circulating immunoglobulin // not recorded /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from sequence or structural similarity /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0006470 // protein dephosphorylation // inferred from sequence or structural similarity /// 0006470 // protein dephosphorylation // traceable author statement /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007159 // leukocyte cell-cell adhesion // inferred from electronic annotation /// 0007159 // leukocyte cell-cell adhesion // not recorded /// 0010332 // response to gamma radiation // inferred from direct assay /// 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from sequence or structural similarity /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0030183 // B cell differentiation // not recorded /// 0030183 // B cell differentiation // inferred from electronic annotation /// 0030217 // T cell differentiation // not recorded /// 0030217 // T cell differentiation // inferred from sequence or structural similarity /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0030890 // positive regulation of B cell proliferation // not recorded /// 0031953 // negative regulation of protein autophosphorylation // inferred from electronic annotation /// 0031953 // negative regulation of protein autophosphorylation // not recorded /// 0033261 // regulation of S phase // inferred from electronic annotation /// 0033261 // regulation of S phase // not recorded /// 0034113 // heterotypic cell-cell adhesion // inferred from electronic annotation /// 0034113 // heterotypic cell-cell adhesion // not recorded /// 0042098 // T cell proliferation // not recorded /// 0042098 // T cell proliferation // inferred from electronic annotation /// 0042100 // B cell proliferation // not recorded /// 0042100 // B cell proliferation // inferred from sequence or structural similarity /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from sequence or structural similarity /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0045059 // positive thymic T cell selection // inferred from electronic annotation /// 0045059 // positive thymic T cell selection // not recorded /// 0045060 // negative thymic T cell selection // inferred from electronic annotation /// 0045060 // negative thymic T cell selection // not recorded /// 0045577 // regulation of B cell differentiation // inferred from electronic annotation /// 0045577 // regulation of B cell differentiation // not recorded /// 0045582 // positive regulation of T cell differentiation // not recorded /// 0045582 // positive regulation of T cell differentiation // inferred from electronic annotation /// 0045588 // positive regulation of gamma-delta T cell differentiation // inferred from electronic annotation /// 0045588 // positive regulation of gamma-delta T cell differentiation // not recorded /// 0046641 // positive regulation of alpha-beta T cell proliferation // inferred from electronic annotation /// 0046641 // positive regulation of alpha-beta T cell proliferation // not recorded /// 0048304 // positive regulation of isotype switching to IgG isotypes // inferred from electronic annotation /// 0048304 // positive regulation of isotype switching to IgG isotypes // not recorded /// 0050732 // negative regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050732 // negative regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050852 // T cell receptor signaling pathway // not recorded /// 0050852 // T cell receptor signaling pathway // inferred from sequence or structural similarity /// 0050852 // T cell receptor signaling pathway // inferred from electronic annotation /// 0050853 // B cell receptor signaling pathway // not recorded /// 0050853 // B cell receptor signaling pathway // inferred from sequence or structural similarity /// 0050853 // B cell receptor signaling pathway // inferred from electronic annotation /// 0050855 // regulation of B cell receptor signaling pathway // inferred from electronic annotation /// 0050855 // regulation of B cell receptor signaling pathway // not recorded /// 0050857 // positive regulation of antigen receptor-mediated signaling pathway // not recorded /// 0050857 // positive regulation of antigen receptor-mediated signaling pathway // inferred from sequence or structural similarity /// 0051209 // release of sequestered calcium ion into cytosol // not recorded /// 0051209 // release of sequestered calcium ion into cytosol // inferred from sequence or structural similarity /// 0051607 // defense response to virus // not recorded /// 0051607 // defense response to virus // inferred from sequence or structural similarity /// 0051726 // regulation of cell cycle // not recorded /// 0051726 // regulation of cell cycle // inferred from sequence or structural similarity 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from direct assay /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // inferred from sequence or structural similarity /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009898 // internal side of plasma membrane // traceable author statement /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // inferred from sequence or structural similarity /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005001 // transmembrane receptor protein tyrosine phosphatase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0019887 // protein kinase regulator activity // traceable author statement /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from sequence or structural similarity /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0043395 // heparan sulfate proteoglycan binding // inferred from electronic annotation /// 0043395 // heparan sulfate proteoglycan binding // not recorded 1390799_at AI177748 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177748 /DB_XREF=gi:3728386 /DB_XREF=EST221390 /CLONE=RPLCF60 /FEA=EST /CNT=8 /TID=Rn.24878.1 /TIER=ConsEnd /STK=3 /UG=Rn.24878 /UG_TITLE=ESTs AI177748 PDZ domain containing 8 Pdzd8 308000 NM_001107446 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390800_a_at BE349669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE349669 /DB_XREF=gi:9261522 /DB_XREF=hq41d08.x1 /CLONE=IMAGE:3121935 /FEA=EST /CNT=8 /TID=Rn.22360.1 /TIER=ConsEnd /STK=3 /UG=Rn.22360 /UG_TITLE=ESTs BE349669 caveolin 2 /// caveolin 2-like Cav2 /// LOC100362824 100362824 /// 363425 NM_131914 /// XM_002730163 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0001937 // negative regulation of endothelial cell proliferation // inferred from sequence or structural similarity /// 0001937 // negative regulation of endothelial cell proliferation // inferred from electronic annotation /// 0006906 // vesicle fusion // not recorded /// 0006906 // vesicle fusion // inferred from sequence or structural similarity /// 0006906 // vesicle fusion // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0007005 // mitochondrion organization // inferred from sequence or structural similarity /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007029 // endoplasmic reticulum organization // not recorded /// 0007029 // endoplasmic reticulum organization // inferred from sequence or structural similarity /// 0007029 // endoplasmic reticulum organization // inferred from electronic annotation /// 0007088 // regulation of mitosis // inferred from electronic annotation /// 0007088 // regulation of mitosis // not recorded /// 0007268 // synaptic transmission // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0016050 // vesicle organization // not recorded /// 0016050 // vesicle organization // inferred from electronic annotation /// 0048278 // vesicle docking // not recorded /// 0048278 // vesicle docking // inferred from sequence or structural similarity /// 0048278 // vesicle docking // inferred from electronic annotation /// 0048741 // skeletal muscle fiber development // not recorded /// 0048741 // skeletal muscle fiber development // inferred from sequence or structural similarity /// 0048741 // skeletal muscle fiber development // inferred from electronic annotation /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0051259 // protein oligomerization // not recorded /// 0060161 // positive regulation of dopamine receptor signaling pathway // not recorded /// 0060161 // positive regulation of dopamine receptor signaling pathway // inferred from sequence or structural similarity /// 0060161 // positive regulation of dopamine receptor signaling pathway // inferred from electronic annotation /// 0070836 // caveola assembly // not recorded /// 0070836 // caveola assembly // inferred from sequence or structural similarity /// 0070836 // caveola assembly // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005901 // caveola // inferred from direct assay /// 0005901 // caveola // not recorded /// 0005901 // caveola // inferred from sequence or structural similarity /// 0005901 // caveola // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from electronic annotation /// 0030133 // transport vesicle // not recorded /// 0031234 // extrinsic to internal side of plasma membrane // not recorded /// 0031234 // extrinsic to internal side of plasma membrane // inferred from sequence or structural similarity /// 0031234 // extrinsic to internal side of plasma membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000149 // SNARE binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019905 // syntaxin binding // inferred from direct assay /// 0031748 // D1 dopamine receptor binding // not recorded /// 0031748 // D1 dopamine receptor binding // inferred from sequence or structural similarity /// 0031748 // D1 dopamine receptor binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0051219 // phosphoprotein binding // inferred from physical interaction 1390801_at AI412174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412174 /DB_XREF=gi:4255678 /DB_XREF=EST240468 /CLONE=RKIEP47 /FEA=EST /CNT=8 /TID=Rn.23870.1 /TIER=ConsEnd /STK=3 /UG=Rn.23870 /UG_TITLE=ESTs AI412174 similar to hypothetical protein MGC34760 RGD1359349 361744 NM_001007738 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1390802_at AI170769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170769 /DB_XREF=gi:3710809 /DB_XREF=EST216708 /CLONE=RMUBB29 /FEA=EST /CNT=8 /TID=Rn.12614.1 /TIER=ConsEnd /STK=3 /UG=Rn.12614 /UG_TITLE=ESTs AI170769 similar to RIKEN cDNA 5033414D02 RGD1306839 293888 NM_001106347 0005739 // mitochondrion // not recorded 1390803_at BE117639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117639 /DB_XREF=gi:8509744 /DB_XREF=UI-R-BS1-aze-b-10-0-UI.s1 /CLONE=UI-R-BS1-aze-b-10-0-UI /FEA=EST /CNT=8 /TID=Rn.15331.1 /TIER=ConsEnd /STK=3 /UG=Rn.15331 /UG_TITLE=ESTs, Weakly similar to SPBP RAT PROSTATIC SPERMINE-BINDING PROTEIN PRECURSOR (R.norvegicus) BE117639 HIV-1 Tat specific factor 1 Htatsf1 317612 NM_001108259 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390804_at AI176434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176434 /DB_XREF=gi:3727072 /DB_XREF=EST220018 /CLONE=ROVBR68 /FEA=EST /CNT=8 /TID=Rn.9545.1 /TIER=ConsEnd /STK=3 /UG=Rn.9545 /UG_TITLE=ESTs AI176434 1390805_at BM390762 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390762 /DB_XREF=gi:18190815 /DB_XREF=UI-R-CN1-cjr-l-23-0-UI.s1 /CLONE=UI-R-CN1-cjr-l-23-0-UI /FEA=EST /CNT=8 /TID=Rn.24500.1 /TIER=ConsEnd /STK=3 /UG=Rn.24500 /UG_TITLE=ESTs BM390762 hypothetical protein LOC689755 LOC689755 689755 NM_001109548 1390806_at AW251111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251111 /DB_XREF=gi:6594722 /DB_XREF=UI-R-BJ0-adi-e-06-0-UI.s1 /CLONE=UI-R-BJ0-adi-e-06-0-UI /FEA=EST /CNT=8 /TID=Rn.19353.1 /TIER=ConsEnd /STK=3 /UG=Rn.19353 /UG_TITLE=ESTs AW251111 similar to RIKEN cDNA B230118H07 RGD1309730 295952 NM_001106491 1390807_at BG375352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375352 /DB_XREF=gi:13299824 /DB_XREF=UI-R-CV1-bsz-d-08-0-UI.s1 /CLONE=UI-R-CV1-bsz-d-08-0-UI /FEA=EST /CNT=12 /TID=Rn.22441.2 /TIER=ConsEnd /STK=3 /UG=Rn.22441 /UG_TITLE=ESTs, Weakly similar to CAH5 RAT CARBONIC ANHYDRASE VA, MITOCHONDRIAL PRECURSOR (R.norvegicus) BG375352 carbonic anhydrase 5b, mitochondrial Car5b 302669 NM_001005551 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0004089 // carbonate dehydratase activity // inferred from electronic annotation /// 0004089 // carbonate dehydratase activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390808_at AW534721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534721 /DB_XREF=gi:7177135 /DB_XREF=UI-R-BS0-anv-b-09-0-UI.s1 /CLONE=UI-R-BS0-anv-b-09-0-UI /FEA=EST /CNT=11 /TID=Rn.34642.1 /TIER=ConsEnd /STK=3 /UG=Rn.34642 /UG_TITLE=ESTs, Moderately similar to A55565 microfibrillar protein MFAP1 (H.sapiens) AW534721 microfibrillar-associated protein 1A Mfap1a 499878 NM_001191964 /// XM_001080976 /// XM_575221 0001527 // microfibril // not recorded /// 0005576 // extracellular region // inferred from electronic annotation 1390809_at AI599392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599392 /DB_XREF=gi:4608440 /DB_XREF=EST251095 /CLONE=REMEO50 /FEA=EST /CNT=9 /TID=Rn.15026.1 /TIER=ConsEnd /STK=3 /UG=Rn.15026 /UG_TITLE=ESTs AI599392 1390810_at BF281550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281550 /DB_XREF=gi:11212620 /DB_XREF=EST446141 /CLONE=RGIAM43 /FEA=EST /CNT=9 /TID=Rn.22077.1 /TIER=ConsEnd /STK=3 /UG=Rn.22077 /UG_TITLE=ESTs BF281550 1390811_at BI290344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290344 /DB_XREF=gi:14948820 /DB_XREF=UI-R-DK0-cfv-b-04-0-UI.s1 /CLONE=UI-R-DK0-cfv-b-04-0-UI /FEA=EST /CNT=7 /TID=Rn.23072.1 /TIER=ConsEnd /STK=3 /UG=Rn.23072 /UG_TITLE=ESTs, Highly similar to WD repeat domain 8; DD57 (Mus musculus) (M.musculus) BI290344 WD repeat domain 8 Wdr8 366515 NM_001014262 0005515 // protein binding // inferred from electronic annotation 1390812_a_at AI170076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170076 /DB_XREF=gi:3710116 /DB_XREF=EST215993 /CLONE=RLUBY66 /FEA=EST /CNT=11 /TID=Rn.19093.1 /TIER=ConsEnd /STK=3 /UG=Rn.19093 /UG_TITLE=ESTs AI170076 RAS-like, estrogen-regulated, growth-inhibitor Rerg 502916 XM_001072746 /// XM_578417 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009725 // response to hormone stimulus // not recorded /// 0030308 // negative regulation of cell growth // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1390813_at AI236624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236624 /DB_XREF=gi:4136221 /DB_XREF=EST233186 /CLONE=ROVDI46 /FEA=EST /CNT=10 /TID=Rn.43808.1 /TIER=ConsEnd /STK=3 /UG=Rn.43808 /UG_TITLE=ESTs AI236624 Musashi homolog 2 (Drosophila) Msi2 360596 XM_001081205 /// XM_340876 0048864 // stem cell development // not recorded 0005737 // cytoplasm // not recorded /// 0005844 // polysome // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003727 // single-stranded RNA binding // not recorded /// 0008266 // poly(U) RNA binding // not recorded 1390814_at AA848897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848897 /DB_XREF=gi:2936437 /DB_XREF=EST191658 /CLONE=RLUAH68 /FEA=EST /CNT=9 /TID=Rn.22814.1 /TIER=ConsEnd /STK=3 /UG=Rn.22814 /UG_TITLE=ESTs AA848897 pellino 1 Peli1 305549 NM_001100565 0001819 // positive regulation of cytokine production // not recorded /// 0001819 // positive regulation of cytokine production // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded /// 0030890 // positive regulation of B cell proliferation // not recorded /// 0030890 // positive regulation of B cell proliferation // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0031398 // positive regulation of protein ubiquitination // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0034141 // positive regulation of toll-like receptor 3 signaling pathway // not recorded /// 0034141 // positive regulation of toll-like receptor 3 signaling pathway // inferred from electronic annotation /// 0034145 // positive regulation of toll-like receptor 4 signaling pathway // not recorded /// 0034145 // positive regulation of toll-like receptor 4 signaling pathway // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043331 // response to dsRNA // not recorded /// 0043331 // response to dsRNA // inferred from electronic annotation /// 0050871 // positive regulation of B cell activation // not recorded /// 0050871 // positive regulation of B cell activation // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1390815_at BF282870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282870 /DB_XREF=gi:11213940 /DB_XREF=EST447461 /CLONE=RGIDU32 /FEA=EST /CNT=8 /TID=Rn.28026.1 /TIER=ConsEnd /STK=3 /UG=Rn.28026 /UG_TITLE=ESTs BF282870 Cyclin M1 Cnnm1 309387 NM_001107593 1390816_at AW529940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529940 /DB_XREF=gi:7172354 /DB_XREF=UI-R-C4-alc-a-10-0-UI.s1 /CLONE=UI-R-C4-alc-a-10-0-UI /FEA=EST /CNT=8 /TID=Rn.23202.1 /TIER=ConsEnd /STK=3 /UG=Rn.23202 /UG_TITLE=ESTs, Highly similar to AT1D MOUSE POTENTIAL PHOSPHOLIPID-TRANSPORTING ATPASE ID (M.musculus) AW529940 Probable phospholipid-transporting ATPase ID-like LOC100364800 100364800 XM_002725994 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0015914 // phospholipid transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004012 // phospholipid-translocating ATPase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation 1390817_at BF394639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394639 /DB_XREF=gi:11379579 /DB_XREF=UI-R-CA0-bfy-b-02-0-UI.s1 /CLONE=UI-R-CA0-bfy-b-02-0-UI /FEA=EST /CNT=8 /TID=Rn.48849.1 /TIER=ConsEnd /STK=3 /UG=Rn.48849 /UG_TITLE=ESTs BF394639 1390818_at BF288088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288088 /DB_XREF=gi:11219158 /DB_XREF=EST452679 /CLONE=RGIGP38 /FEA=EST /CNT=7 /TID=Rn.24265.1 /TIER=ConsEnd /STK=3 /UG=Rn.24265 /UG_TITLE=ESTs BF288088 1390819_at BF419374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419374 /DB_XREF=gi:11407363 /DB_XREF=UI-R-BJ2-bqq-g-12-0-UI.s1 /CLONE=UI-R-BJ2-bqq-g-12-0-UI /FEA=EST /CNT=7 /TID=Rn.59871.1 /TIER=ConsEnd /STK=3 /UG=Rn.59871 /UG_TITLE=ESTs BF419374 thyrotrophic embryonic factor Tef 29362 NM_019194 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048511 // rhythmic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from expression pattern 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1390820_at BE108198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108198 /DB_XREF=gi:8500268 /DB_XREF=UI-R-BS1-ayw-b-08-0-UI.s1 /CLONE=UI-R-BS1-ayw-b-08-0-UI /FEA=EST /CNT=7 /TID=Rn.15558.1 /TIER=ConsEnd /STK=3 /UG=Rn.15558 /UG_TITLE=ESTs BE108198 zinc finger, CCHC domain containing 11 Zcchc11 313481 NM_001107953 0001816 // cytokine production // not recorded /// 0010587 // miRNA catabolic process // not recorded /// 0019827 // stem cell maintenance // not recorded /// 0031054 // pre-microRNA processing // not recorded /// 0031123 // RNA 3'-end processing // not recorded /// 0031664 // regulation of lipopolysaccharide-mediated signaling pathway // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0071044 // histone mRNA catabolic process // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0050265 // RNA uridylyltransferase activity // not recorded 1390821_at AI103156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103156 /DB_XREF=gi:3707729 /DB_XREF=EST212445 /CLONE=REMBX87 /FEA=EST /CNT=7 /TID=Rn.22308.1 /TIER=ConsEnd /STK=3 /UG=Rn.22308 /UG_TITLE=ESTs AI103156 protocadherin alpha 1 /// protocadherin alpha 10 /// protocadherin alpha 11 /// protocadherin alpha 12 /// protocadherin alpha 13 /// protocadherin alpha 2 /// protocadherin alpha 3 /// protocadherin alpha 4 /// protocadherin alpha 5 /// protocadherin alpha 6 /// protocadherin alpha 7 /// protocadherin alpha 8 /// protocadherin alpha 9 /// protocadherin alpha subfamily C, 1 /// protocadherin alpha subfamily C, 2 Pcdha1 /// Pcdha10 /// Pcdha11 /// Pcdha12 /// Pcdha13 /// Pcdha2 /// Pcdha3 /// Pcdha4 /// Pcdha5 /// Pcdha6 /// Pcdha7 /// Pcdha8 /// Pcdha9 /// Pcdhac1 /// Pcdhac2 116741 /// 116742 /// 116778 /// 116779 /// 116780 /// 116781 /// 393085 /// 393086 /// 393087 /// 393088 /// 393089 /// 393090 /// 393091 /// 393092 /// 394223 NM_053933 /// NM_053934 /// NM_053939 /// NM_053940 /// NM_053941 /// NM_053942 /// NM_199486 /// NM_199503 /// NM_199504 /// NM_199505 /// NM_199506 /// NM_199507 /// NM_199508 /// NM_199509 /// NM_201422 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007283 // spermatogenesis // non-traceable author statement /// 0042476 // odontogenesis // non-traceable author statement 0005615 // extracellular space // traceable author statement /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390822_at AI411500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411500 /DB_XREF=gi:4255004 /DB_XREF=EST239794 /CLONE=RKIEL60 /FEA=EST /CNT=7 /TID=Rn.3478.1 /TIER=ConsEnd /STK=3 /UG=Rn.3478 /UG_TITLE=ESTs, Weakly similar to cadherin 17 (Rattus norvegicus) (R.norvegicus) AI411500 cadherin 16 Cdh16 307614 NM_001012055 0006486 // protein glycosylation // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0008378 // galactosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1390823_at AA924839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924839 /DB_XREF=gi:4236030 /DB_XREF=UI-R-A1-eg-h-06-0-UI.s1 /CLONE=UI-R-A1-eg-h-06-0-UI /FEA=EST /CNT=6 /TID=Rn.8366.1 /TIER=ConsEnd /STK=3 /UG=Rn.8366 /UG_TITLE=ESTs AA924839 S-phase kinase-associated protein 2 (p45) Skp2 294790 NM_001106416 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0000209 // protein polyubiquitination // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0008634 // negative regulation of survival gene product expression // not recorded /// 0033148 // positive regulation of estrogen receptor signaling pathway // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0051726 // regulation of cell cycle // not recorded /// 0071460 // cellular response to cell-matrix adhesion // inferred from expression pattern 0019005 // SCF ubiquitin ligase complex // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1390824_at BG374233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374233 /DB_XREF=gi:13298705 /DB_XREF=UI-R-CV1-bsm-h-08-0-UI.s1 /CLONE=UI-R-CV1-bsm-h-08-0-UI /FEA=EST /CNT=6 /TID=Rn.39102.1 /TIER=ConsEnd /STK=3 /UG=Rn.39102 /UG_TITLE=ESTs BG374233 Similar to hypothetical protein MGC38716 RGD1304963 313891 XM_001067282 /// XM_233868 1390825_at AI010067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010067 /DB_XREF=gi:4133151 /DB_XREF=EST204518 /CLONE=RLUBT22 /FEA=EST /CNT=6 /TID=Rn.6323.1 /TIER=ConsEnd /STK=3 /UG=Rn.6323 /UG_TITLE=ESTs AI010067 solute carrier family 35, member B3 Slc35b3 306866 XM_001063451 /// XM_225253 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1390826_at BM386821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386821 /DB_XREF=gi:18186879 /DB_XREF=UI-R-CN1-cjh-i-24-0-UI.s1 /CLONE=UI-R-CN1-cjh-i-24-0-UI /FEA=EST /CNT=6 /TID=Rn.9088.1 /TIER=ConsEnd /STK=3 /UG=Rn.9088 /UG_TITLE=ESTs, Weakly similar to protein tyrosine phosphatase (M.musculus) BM386821 hypothetical protein LOC100360116 LOC100360116 100360116 XM_002725725 /// XM_002728815 1390827_at AA997679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997679 /DB_XREF=gi:4280961 /DB_XREF=UI-R-C0-hm-d-08-0-UI.s1 /CLONE=UI-R-C0-hm-d-08-0-UI /FEA=EST /CNT=6 /TID=Rn.12544.1 /TIER=ConsEnd /STK=3 /UG=Rn.12544 /UG_TITLE=ESTs AA997679 1390828_at BI395810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI395810 /DB_XREF=gi:15091399 /DB_XREF=EST531744 /CLONE=RGICN25 /FEA=EST /CNT=6 /TID=Rn.11642.1 /TIER=ConsEnd /STK=3 /UG=Rn.11642 /UG_TITLE=ESTs BI395810 neuropeptide Y receptor Y1 Npy1r 29358 NM_001113357 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // not recorded /// 0007268 // synaptic transmission // not recorded /// 0007626 // locomotory behavior // inferred from electronic annotation /// 0007626 // locomotory behavior // not recorded /// 0007631 // feeding behavior // inferred from electronic annotation /// 0007631 // feeding behavior // not recorded /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008217 // regulation of blood pressure // not recorded /// 0019233 // sensory perception of pain // inferred from mutant phenotype /// 0019233 // sensory perception of pain // not recorded /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0030432 // peristalsis // inferred from mutant phenotype /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0045907 // positive regulation of vasoconstriction // inferred from mutant phenotype /// 0046888 // negative regulation of hormone secretion // inferred from mutant phenotype /// 0051481 // reduction of cytosolic calcium ion concentration // inferred from mutant phenotype 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay 0001601 // peptide YY receptor activity // inferred from electronic annotation /// 0001601 // peptide YY receptor activity // not recorded /// 0001602 // pancreatic polypeptide receptor activity // inferred from electronic annotation /// 0001602 // pancreatic polypeptide receptor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004983 // neuropeptide Y receptor activity // not recorded /// 0004983 // neuropeptide Y receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390829_at BG374590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374590 /DB_XREF=gi:13299102 /DB_XREF=UI-R-CV1-bta-e-12-0-UI.s1 /CLONE=UI-R-CV1-bta-e-12-0-UI /FEA=EST /CNT=6 /TID=Rn.48051.1 /TIER=ConsEnd /STK=3 /UG=Rn.48051 /UG_TITLE=ESTs BG374590 1390830_at BE113228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113228 /DB_XREF=gi:8505333 /DB_XREF=UI-R-BJ1-awd-a-08-0-UI.s1 /CLONE=UI-R-BJ1-awd-a-08-0-UI /FEA=EST /CNT=6 /TID=Rn.12999.1 /TIER=ConsEnd /STK=3 /UG=Rn.12999 /UG_TITLE=ESTs BE113228 hypothetical protein LOC499602 LOC499602 499602 NM_001025039 0005576 // extracellular region // inferred from electronic annotation 1390831_at BF407157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407157 /DB_XREF=gi:11395132 /DB_XREF=UI-R-BJ2-bqw-d-01-0-UI.s1 /CLONE=UI-R-BJ2-bqw-d-01-0-UI /FEA=EST /CNT=6 /TID=Rn.19998.2 /TIER=ConsEnd /STK=3 /UG=Rn.19998 /UG_TITLE=ESTs BF407157 1390832_at BI294696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294696 /DB_XREF=gi:14957402 /DB_XREF=UI-R-DK0-ceb-a-05-0-UI.s1 /CLONE=UI-R-DK0-ceb-a-05-0-UI /FEA=EST /CNT=6 /TID=Rn.19106.1 /TIER=ConsEnd /STK=3 /UG=Rn.19106 /UG_TITLE=ESTs BI294696 transmembrane and coiled-coil domain family 3 Tmcc3 314751 NM_001108084 0016021 // integral to membrane // inferred from electronic annotation 1390833_at BF399096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399096 /DB_XREF=gi:11384100 /DB_XREF=UI-R-CA1-bja-p-23-0-UI.s1 /CLONE=UI-R-CA1-bja-p-23-0-UI /FEA=EST /CNT=6 /TID=Rn.55294.1 /TIER=ConsEnd /STK=3 /UG=Rn.55294 /UG_TITLE=ESTs BF399096 1390834_at BM390369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390369 /DB_XREF=gi:18190416 /DB_XREF=UI-R-CN1-cjq-d-05-0-UI.s1 /CLONE=UI-R-CN1-cjq-d-05-0-UI /FEA=EST /CNT=6 /TID=Rn.39364.1 /TIER=ConsEnd /STK=3 /UG=Rn.39364 /UG_TITLE=ESTs, Weakly similar to MRP5_RAT MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 5 (R.norvegicus) BM390369 ATP-binding cassette, sub-family C (CFTR/MRP), member 10 Abcc10 316231 NM_001108201 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 1390835_at AI013568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013568 /DB_XREF=gi:3227624 /DB_XREF=EST208243 /CLONE=RSPBO43 /FEA=EST /CNT=6 /TID=Rn.17240.1 /TIER=ConsEnd /STK=3 /UG=Rn.17240 /UG_TITLE=ESTs AI013568 solute carrier family 47, member 1 Slc47a1 360539 NM_001014118 0006810 // transport // inferred from electronic annotation /// 0006855 // drug transmembrane transport // inferred from direct assay /// 0006855 // drug transmembrane transport // inferred from electronic annotation /// 0015695 // organic cation transport // inferred from direct assay /// 0015893 // drug transport // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005451 // monovalent cation:hydrogen antiporter activity // inferred from mutant phenotype /// 0015238 // drug transmembrane transporter activity // inferred from direct assay /// 0015238 // drug transmembrane transporter activity // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation 1390836_at AI031048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI031048 /DB_XREF=gi:3248874 /DB_XREF=UI-R-C0-jp-e-11-0-UI.s1 /CLONE=UI-R-C0-jp-e-11-0-UI /FEA=EST /CNT=6 /TID=Rn.18669.1 /TIER=ConsEnd /STK=3 /UG=Rn.18669 /UG_TITLE=ESTs AI031048 1390837_at AI717114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717114 /DB_XREF=gi:5034370 /DB_XREF=UI-R-Y0-abe-b-08-0-UI.s1 /CLONE=UI-R-Y0-abe-b-08-0-UI /FEA=EST /CNT=6 /TID=Rn.33175.1 /TIER=ConsEnd /STK=3 /UG=Rn.33175 /UG_TITLE=ESTs AI717114 1390838_at BE115823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115823 /DB_XREF=gi:8507928 /DB_XREF=UI-R-BS1-axv-c-05-0-UI.s1 /CLONE=UI-R-BS1-axv-c-05-0-UI /FEA=EST /CNT=6 /TID=Rn.52575.1 /TIER=ConsEnd /STK=3 /UG=Rn.52575 /UG_TITLE=ESTs BE115823 1390839_at AW915795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915795 /DB_XREF=gi:8081503 /DB_XREF=EST347099 /CLONE=RGIDA85 /FEA=EST /CNT=6 /TID=Rn.12743.1 /TIER=ConsEnd /STK=3 /UG=Rn.12743 /UG_TITLE=ESTs AW915795 PQ loop repeat containing 3 Pqlc3 298906 NM_001034952 1390840_at BF398182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398182 /DB_XREF=gi:11383168 /DB_XREF=UI-R-BS2-ben-d-03-0-UI.s1 /CLONE=UI-R-BS2-ben-d-03-0-UI /FEA=EST /CNT=6 /TID=Rn.12854.1 /TIER=ConsEnd /STK=3 /UG=Rn.12854 /UG_TITLE=ESTs BF398182 1390841_at BI290420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290420 /DB_XREF=gi:14948973 /DB_XREF=UI-R-DK0-cfw-b-02-0-UI.s1 /CLONE=UI-R-DK0-cfw-b-02-0-UI /FEA=EST /CNT=6 /TID=Rn.11956.1 /TIER=ConsEnd /STK=3 /UG=Rn.11956 /UG_TITLE=ESTs BI290420 1390842_at BF397542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397542 /DB_XREF=gi:11382525 /DB_XREF=UI-R-BS2-bez-g-03-0-UI.s1 /CLONE=UI-R-BS2-bez-g-03-0-UI /FEA=EST /CNT=6 /TID=Rn.64114.1 /TIER=ConsEnd /STK=3 /UG=Rn.64114 /UG_TITLE=ESTs BF397542 transcription factor AP-2, alpha Tcfap2a 306862 NM_001107345 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0021506 // anterior neuropore closure // inferred from electronic annotation /// 0021506 // anterior neuropore closure // not recorded /// 0030501 // positive regulation of bone mineralization // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048701 // embryonic cranial skeleton morphogenesis // inferred from electronic annotation /// 0048701 // embryonic cranial skeleton morphogenesis // not recorded /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // not recorded /// 0070172 // positive regulation of tooth mineralization // inferred from electronic annotation /// 0070172 // positive regulation of tooth mineralization // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // not recorded 1390843_at AI229827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229827 /DB_XREF=gi:3813714 /DB_XREF=EST226522 /CLONE=REMCN11 /FEA=EST /CNT=6 /TID=Rn.24472.1 /TIER=ConsEnd /STK=3 /UG=Rn.24472 /UG_TITLE=ESTs AI229827 coiled-coil domain containing 102A Ccdc102a 361363 NM_001108437 1390844_at AI230339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230339 /DB_XREF=gi:4135538 /DB_XREF=EST227034 /CLONE=REMCV28 /FEA=EST /CNT=6 /TID=Rn.12413.1 /TIER=ConsEnd /STK=3 /UG=Rn.12413 /UG_TITLE=ESTs AI230339 Spindle and kinetochore associated complex subunit 2 Ska2 287598 NM_001009624 0000090 // mitotic anaphase // not recorded /// 0000090 // mitotic anaphase // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // not recorded /// 0007059 // chromosome segregation // inferred from sequence or structural similarity /// 0007067 // mitosis // not recorded /// 0007067 // mitosis // inferred from sequence or structural similarity /// 0007067 // mitosis // inferred from electronic annotation /// 0031110 // regulation of microtubule polymerization or depolymerization // not recorded /// 0031110 // regulation of microtubule polymerization or depolymerization // inferred from sequence or structural similarity /// 0051301 // cell division // not recorded /// 0051301 // cell division // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0000940 // condensed chromosome outer kinetochore // not recorded /// 0000940 // condensed chromosome outer kinetochore // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded /// 0005876 // spindle microtubule // inferred from sequence or structural similarity 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // not recorded /// 0008017 // microtubule binding // inferred from sequence or structural similarity 1390845_at AI179288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179288 /DB_XREF=gi:3729926 /DB_XREF=EST222981 /CLONE=RSPCE71 /FEA=EST /CNT=6 /TID=Rn.12856.1 /TIER=ConsEnd /STK=3 /UG=Rn.12856 /UG_TITLE=ESTs AI179288 1390846_at BG380309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380309 /DB_XREF=gi:13304781 /DB_XREF=UI-R-CS0-btv-e-12-0-UI.s1 /CLONE=UI-R-CS0-btv-e-12-0-UI /FEA=EST /CNT=6 /TID=Rn.38112.1 /TIER=ConsEnd /STK=3 /UG=Rn.38112 /UG_TITLE=ESTs, Weakly similar to CA1C RAT COLLAGEN ALPHA 1(XII) CHAIN (R.norvegicus) BG380309 collagen, type XVI, alpha 1 Col16a1 366474 NM_001015033 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded 0005178 // integrin binding // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390847_at BF558827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558827 /DB_XREF=gi:11668557 /DB_XREF=UI-R-A1-du-g-08-0-UI.r1 /CLONE=UI-R-A1-du-g-08-0-UI /FEA=EST /CNT=6 /TID=Rn.23056.1 /TIER=ConsEnd /STK=3 /UG=Rn.23056 /UG_TITLE=ESTs BF558827 transmembrane protein 86A Tmem86a 308602 NM_001135016 0016021 // integral to membrane // inferred from electronic annotation 1390848_at BE118552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118552 /DB_XREF=gi:8510657 /DB_XREF=UI-R-BJ1-azq-b-01-0-UI.s1 /CLONE=UI-R-BJ1-azq-b-01-0-UI /FEA=EST /CNT=6 /TID=Rn.8176.1 /TIER=ConsEnd /STK=3 /UG=Rn.8176 /UG_TITLE=ESTs BE118552 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1390849_at AW520584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520584 /DB_XREF=gi:7162962 /DB_XREF=UI-R-BJ0p-agc-b-06-0-UI.s1 /CLONE=UI-R-BJ0p-agc-b-06-0-UI /FEA=EST /CNT=6 /TID=Rn.20519.1 /TIER=ConsEnd /STK=3 /UG=Rn.20519 /UG_TITLE=ESTs AW520584 1390850_at AA874941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA874941 /DB_XREF=gi:4230823 /DB_XREF=UI-R-E0-ci-d-06-0-UI.s1 /CLONE=UI-R-E0-ci-d-06-0-UI /FEA=EST /CNT=6 /TID=Rn.3182.2 /TIER=ConsEnd /STK=3 /UG=Rn.3182 /UG_TITLE=ESTs, Moderately similar to ADFP MOUSE ADIPOPHILIN (M.musculus) AA874941 Adipose differentiation related protein Adfp 298199 NM_001007144 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0015909 // long-chain fatty acid transport // inferred from electronic annotation /// 0015909 // long-chain fatty acid transport // not recorded /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0019915 // lipid storage // not recorded /// 0019915 // lipid storage // traceable author statement /// 0019915 // lipid storage // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005811 // lipid particle // inferred from direct assay /// 0005811 // lipid particle // not recorded /// 0005811 // lipid particle // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1390851_at AA799676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799676 /DB_XREF=gi:2862631 /DB_XREF=EST189173 /CLONE=RHEAD91 /FEA=EST /CNT=6 /TID=Rn.24909.1 /TIER=ConsEnd /STK=3 /UG=Rn.24909 /UG_TITLE=ESTs AA799676 Lactamase, beta 2 Lactb2 297768 NM_001024247 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390852_x_at BF389856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389856 /DB_XREF=gi:11374693 /DB_XREF=UI-R-BS2-bdp-e-05-0-UI.s1 /CLONE=UI-R-BS2-bdp-e-05-0-UI /FEA=EST /CNT=6 /TID=Rn.3917.1 /TIER=ConsEnd /STK=3 /UG=Rn.3917 /UG_TITLE=ESTs BF389856 DDB1 and CUL4 associated factor 6 Dcaf6 289181 XM_001071288 /// XM_002724885 /// XM_002728021 /// XM_213926 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0080008 // CUL4 RING ubiquitin ligase complex // not recorded 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded 1390853_at BG380315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380315 /DB_XREF=gi:13304787 /DB_XREF=UI-R-CS0-btv-f-07-0-UI.s1 /CLONE=UI-R-CS0-btv-f-07-0-UI /FEA=EST /CNT=9 /TID=Rn.6533.1 /TIER=ConsEnd /STK=3 /UG=Rn.6533 /UG_TITLE=ESTs BG380315 1390854_at BG378195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378195 /DB_XREF=gi:13302667 /DB_XREF=UI-R-CV1-bvp-b-05-0-UI.s1 /CLONE=UI-R-CV1-bvp-b-05-0-UI /FEA=EST /CNT=8 /TID=Rn.65520.1 /TIER=ConsEnd /STK=3 /UG=Rn.65520 /UG_TITLE=ESTs, Weakly similar to C21O_HUMAN PROTEIN C21ORF2 (H.sapiens) BG378195 C2 calcium-dependent domain containing 2-like C2cd2l 300666 NM_001011996 0016021 // integral to membrane // inferred from electronic annotation 1390855_at AI235923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235923 /DB_XREF=gi:3829429 /DB_XREF=EST232485 /CLONE=ROVCY67 /FEA=EST /CNT=8 /TID=Rn.25202.1 /TIER=ConsEnd /STK=3 /UG=Rn.25202 /UG_TITLE=ESTs AI235923 1390856_at BF289100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289100 /DB_XREF=gi:11220170 /DB_XREF=EST453691 /CLONE=RGIHB11 /FEA=EST /CNT=7 /TID=Rn.11631.1 /TIER=ConsEnd /STK=3 /UG=Rn.11631 /UG_TITLE=ESTs BF289100 1390857_at BI279844 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279844 /DB_XREF=gi:14928048 /DB_XREF=UI-R-CU0s-cbr-f-03-0-UI.s1 /CLONE=UI-R-CU0s-cbr-f-03-0-UI /FEA=EST /CNT=7 /TID=Rn.8732.1 /TIER=ConsEnd /STK=3 /UG=Rn.8732 /UG_TITLE=ESTs BI279844 xylulokinase homolog (H. influenzae) Xylb 316067 NM_001033704 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0042732 // D-xylose metabolic process // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004856 // xylulokinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1390858_at BM383657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383657 /DB_XREF=gi:18183710 /DB_XREF=UI-R-DM1-cka-l-24-0-UI.s1 /CLONE=UI-R-DM1-cka-l-24-0-UI /FEA=EST /CNT=7 /TID=Rn.23862.1 /TIER=ConsEnd /STK=3 /UG=Rn.23862 /UG_TITLE=ESTs BM383657 valosin containing protein (p97)/p47 complex interacting protein 1 Vcpip1 286761 NM_176857 0007030 // Golgi organization // inferred from mutant phenotype /// 0007067 // mitosis // inferred from mutant phenotype /// 0016320 // endoplasmic reticulum membrane fusion // inferred from direct assay /// 0016567 // protein ubiquitination // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // inferred from electronic annotation 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0005515 // protein binding // inferred from mutant phenotype /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1390859_at BI290968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290968 /DB_XREF=gi:14950058 /DB_XREF=UI-R-DK0-cgb-h-01-0-UI.s1 /CLONE=UI-R-DK0-cgb-h-01-0-UI /FEA=EST /CNT=7 /TID=Rn.12449.1 /TIER=ConsEnd /STK=3 /UG=Rn.12449 /UG_TITLE=ESTs, Moderately similar to T00389 hypothetical protein KIAA0615 (H.sapiens) BI290968 Nedd4 binding protein 1 N4bp1 291921 XM_001068071 /// XM_214648 0031397 // negative regulation of protein ubiquitination // not recorded /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded 0005730 // nucleolus // not recorded /// 0016605 // PML body // not recorded 0005515 // protein binding // not recorded 1390860_at AI230709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230709 /DB_XREF=gi:4135583 /DB_XREF=EST227404 /CLONE=REMDA27 /FEA=EST /CNT=7 /TID=Rn.31564.1 /TIER=ConsEnd /STK=3 /UG=Rn.31564 /UG_TITLE=ESTs, Weakly similar to PCB3_MOUSE POLY(RC)-BINDING PROTEIN 3 (ALPHA-CP3) (M.musculus) AI230709 insulin-like growth factor 2 mRNA binding protein 3 Igf2bp3 312320 NM_001047888 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // not recorded /// 0005515 // protein binding // not recorded /// 0048027 // mRNA 5'-UTR binding // not recorded 1390861_at AW524684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524684 /DB_XREF=gi:7167069 /DB_XREF=UI-R-BO0-aib-b-12-0-UI.s1 /CLONE=UI-R-BO0-aib-b-12-0-UI /FEA=EST /CNT=6 /TID=Rn.41593.1 /TIER=ConsEnd /STK=3 /UG=Rn.41593 /UG_TITLE=ESTs, Weakly similar to TC17 RAT TRANSCRIPTION FACTOR 17 (R.norvegicus) AW524684 zinc finger protein 709-like 2 Zfp709l2 362845 NM_001163062 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1390862_at BG380675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380675 /DB_XREF=gi:13305147 /DB_XREF=UI-R-CT0-bua-b-05-0-UI.s1 /CLONE=UI-R-CT0-bua-b-05-0-UI /FEA=EST /CNT=6 /TID=Rn.44885.1 /TIER=ConsEnd /STK=3 /UG=Rn.44885 /UG_TITLE=ESTs BG380675 zinc finger protein 629 Znf629 308998 NM_001107551 0005634 // nucleus // not recorded 1390863_at BF283298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283298 /DB_XREF=gi:11214368 /DB_XREF=EST447889 /CLONE=RGIDZ94 /FEA=EST /CNT=6 /TID=Rn.19386.1 /TIER=ConsEnd /STK=3 /UG=Rn.19386 /UG_TITLE=ESTs BF283298 solute carrier family 19 (thiamine transporter), member 2 Slc19a2 289175 NM_001030024 0006810 // transport // inferred from electronic annotation /// 0015888 // thiamin transport // inferred from electronic annotation /// 0015888 // thiamin transport // not recorded /// 0035461 // vitamin transmembrane transport // not recorded /// 0042723 // thiamin and derivative metabolic process // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005542 // folic acid binding // inferred from electronic annotation /// 0008518 // reduced folate carrier activity // inferred from electronic annotation /// 0015234 // thiamin transmembrane transporter activity // inferred from electronic annotation /// 0015234 // thiamin transmembrane transporter activity // not recorded 1390864_at BE107335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107335 /DB_XREF=gi:8499440 /DB_XREF=UI-R-BS1-ays-e-10-0-UI.s1 /CLONE=UI-R-BS1-ays-e-10-0-UI /FEA=EST /CNT=6 /TID=Rn.42740.1 /TIER=ConsEnd /STK=3 /UG=Rn.42740 /UG_TITLE=ESTs BE107335 1390865_at AW524822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524822 /DB_XREF=gi:7167207 /DB_XREF=UI-R-BO0-ahy-f-12-0-UI.s1 /CLONE=UI-R-BO0-ahy-f-12-0-UI /FEA=EST /CNT=6 /TID=Rn.45812.1 /TIER=ConsEnd /STK=3 /UG=Rn.45812 /UG_TITLE=ESTs, Moderately similar to I84505 calcium-dependent actin-binding protein - rat (R.norvegicus) AW524822 Ca++-dependent secretion activator 2 Cadps2 312166 XM_001060172 /// XM_002726328 /// XM_002726329 /// XM_002726330 /// XM_002726331 /// XM_002729288 /// XM_002729289 /// XM_002729290 /// XM_002729291 /// XM_231528 0045921 // positive regulation of exocytosis // not recorded 0008021 // synaptic vesicle // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0031410 // cytoplasmic vesicle // not recorded /// 0042734 // presynaptic membrane // not recorded /// 0045211 // postsynaptic membrane // not recorded 0005515 // protein binding // not recorded 1390866_at AI168981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI168981 /DB_XREF=gi:3705289 /DB_XREF=EST214809 /CLONE=RKIBL47 /FEA=EST /CNT=6 /TID=Rn.22374.1 /TIER=ConsEnd /STK=3 /UG=Rn.22374 /UG_TITLE=ESTs AI168981 1390867_at BF565850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565850 /DB_XREF=gi:11675580 /DB_XREF=UI-R-C4-alb-e-10-0-UI.r1 /CLONE=UI-R-C4-alb-e-10-0-UI /FEA=EST /CNT=6 /TID=Rn.27824.1 /TIER=ConsEnd /STK=3 /UG=Rn.27824 /UG_TITLE=ESTs BF565850 1390868_at BF403073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403073 /DB_XREF=gi:11391048 /DB_XREF=UI-R-CA0-biy-f-08-0-UI.s1 /CLONE=UI-R-CA0-biy-f-08-0-UI /FEA=EST /CNT=6 /TID=Rn.40331.1 /TIER=ConsEnd /STK=3 /UG=Rn.40331 /UG_TITLE=ESTs BF403073 similar to RIKEN cDNA 1200016B10 RGD1308695 289088 NM_001105960 1390869_at AW919314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919314 /DB_XREF=gi:8085107 /DB_XREF=EST350618 /CLONE=RGIFP64 /FEA=EST /CNT=6 /TID=Rn.24402.1 /TIER=ConsEnd /STK=3 /UG=Rn.24402 /UG_TITLE=ESTs AW919314 cerebellin 1 precursor Cbln1 498922 NM_001109127 0005576 // extracellular region // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1390870_at BF408540 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408540 /DB_XREF=gi:11396515 /DB_XREF=UI-R-BJ2-brf-a-03-0-UI.s1 /CLONE=UI-R-BJ2-brf-a-03-0-UI /FEA=EST /CNT=6 /TID=Rn.25095.2 /TIER=ConsEnd /STK=3 /UG=Rn.25095 /UG_TITLE=ESTs, Weakly similar to Zinc finger, C3HC4 type (RING finger) (Caenorhabditis elegans) (C.elegans) BF408540 ring finger protein 207 Rnf207 691246 XM_001075996 /// XM_002726663 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390871_at BF286230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF286230 /DB_XREF=gi:11217300 /DB_XREF=EST450821 /CLONE=RGIFN42 /FEA=EST /CNT=6 /TID=Rn.21731.1 /TIER=ConsEnd /STK=3 /UG=Rn.21731 /UG_TITLE=ESTs, Highly similar to A Chain A, Fbp28ww Domain From Mus Musculus (M.musculus) BF286230 transcription elongation regulator 1 Tcerg1 307474 NM_001107390 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390872_at AI178134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178134 /DB_XREF=gi:3728772 /DB_XREF=EST221797 /CLONE=RPLCM56 /FEA=EST /CNT=5 /TID=Rn.20456.1 /TIER=ConsEnd /STK=3 /UG=Rn.20456 /UG_TITLE=ESTs AI178134 1390873_at BE118616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118616 /DB_XREF=gi:8510721 /DB_XREF=UI-R-BJ1-azq-g-10-0-UI.s1 /CLONE=UI-R-BJ1-azq-g-10-0-UI /FEA=EST /CNT=5 /TID=Rn.53013.1 /TIER=ConsEnd /STK=3 /UG=Rn.53013 /UG_TITLE=ESTs BE118616 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1390874_at BE109206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109206 /DB_XREF=gi:8501311 /DB_XREF=UI-R-BS1-azd-b-07-0-UI.s1 /CLONE=UI-R-BS1-azd-b-07-0-UI /FEA=EST /CNT=5 /TID=Rn.32899.1 /TIER=ConsEnd /STK=3 /UG=Rn.32899 /UG_TITLE=ESTs BE109206 Iron responsive element binding protein 2 Ireb2 64831 NM_022863 0006417 // regulation of translation // inferred from electronic annotation /// 0006417 // regulation of translation // not recorded /// 0006782 // protoporphyrinogen IX biosynthetic process // inferred from electronic annotation /// 0006782 // protoporphyrinogen IX biosynthetic process // not recorded /// 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0034101 // erythrocyte homeostasis // inferred from electronic annotation /// 0034101 // erythrocyte homeostasis // not recorded /// 0050892 // intestinal absorption // inferred from electronic annotation /// 0050892 // intestinal absorption // not recorded /// 0055072 // iron ion homeostasis // non-traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030350 // iron-responsive element binding // inferred from direct assay /// 0030350 // iron-responsive element binding // not recorded /// 0030350 // iron-responsive element binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 1390875_a_at BF290046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290046 /DB_XREF=gi:11221116 /DB_XREF=EST454637 /CLONE=RGIHN06 /FEA=EST /CNT=7 /TID=Rn.18672.2 /TIER=ConsEnd /STK=2 /UG=Rn.18672 /UG_TITLE=ESTs BF290046 coiled-coil domain containing 41 Ccdc41 366872 NM_001014266 1390876_at BM386308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386308 /DB_XREF=gi:18186361 /DB_XREF=UI-R-CN1-cjf-h-13-0-UI.s1 /CLONE=UI-R-CN1-cjf-h-13-0-UI /FEA=EST /CNT=5 /TID=Rn.46305.1 /TIER=ConsEnd /STK=3 /UG=Rn.46305 /UG_TITLE=ESTs BM386308 histidine acid phosphatase domain containing 2A Hisppd2a 311355 NM_001080783 0006020 // inositol metabolic process // not recorded /// 0006020 // inositol metabolic process // inferred from sequence or structural similarity /// 0006020 // inositol metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000827 // inositol 1,3,4,5,6-pentakisphosphate kinase activity // not recorded /// 0000827 // inositol 1,3,4,5,6-pentakisphosphate kinase activity // inferred from sequence or structural similarity /// 0000827 // inositol 1,3,4,5,6-pentakisphosphate kinase activity // inferred from electronic annotation /// 0000832 // inositol hexakisphosphate 5-kinase activity // not recorded /// 0000832 // inositol hexakisphosphate 5-kinase activity // inferred from sequence or structural similarity /// 0000832 // inositol hexakisphosphate 5-kinase activity // inferred from electronic annotation /// 0003993 // acid phosphatase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0033857 // diphosphoinositol-pentakisphosphate kinase activity // not recorded /// 0033857 // diphosphoinositol-pentakisphosphate kinase activity // inferred from sequence or structural similarity /// 0033857 // diphosphoinositol-pentakisphosphate kinase activity // inferred from electronic annotation 1390877_at AA850798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850798 /DB_XREF=gi:4131887 /DB_XREF=EST193566 /CLONE=ROVAK88 /FEA=EST /CNT=5 /TID=Rn.30223.1 /TIER=ConsEnd /STK=3 /UG=Rn.30223 /UG_TITLE=ESTs AA850798 1390878_at BI296047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296047 /DB_XREF=gi:14960098 /DB_XREF=UI-R-DK0-cfd-g-03-0-UI.s1 /CLONE=UI-R-DK0-cfd-g-03-0-UI /FEA=EST /CNT=5 /TID=Rn.64144.1 /TIER=ConsEnd /STK=3 /UG=Rn.64144 /UG_TITLE=ESTs, Moderately similar to TSP4 RAT THROMBOSPONDIN 4 PRECURSOR (R.norvegicus) BI296047 similar to Thrombospondin-3 precursor LOC681309 681309 XR_006034 /// XR_085761 1390879_at BE098355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098355 /DB_XREF=gi:8490218 /DB_XREF=UI-R-BJ1-asy-f-11-0-UI.s1 /CLONE=UI-R-BJ1-asy-f-11-0-UI /FEA=EST /CNT=5 /TID=Rn.2984.1 /TIER=ConsEnd /STK=3 /UG=Rn.2984 /UG_TITLE=ESTs BE098355 1390880_at BF420467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420467 /DB_XREF=gi:11408421 /DB_XREF=UI-R-BJ2-bpw-a-05-0-UI.s1 /CLONE=UI-R-BJ2-bpw-a-05-0-UI /FEA=EST /CNT=5 /TID=Rn.64413.1 /TIER=ConsEnd /STK=3 /UG=Rn.64413 /UG_TITLE=ESTs, Moderately similar to HSPC021 (H.sapiens) BF420467 eukaryotic translation initiation factor 3, subunit 6 interacting protein Eif3s6ip 300069 NM_001034134 0006413 // translational initiation // inferred from electronic annotation 0001650 // fibrillar center // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1390881_at AI172339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172339 /DB_XREF=gi:3712379 /DB_XREF=EST218341 /CLONE=RMUBY06 /FEA=EST /CNT=5 /TID=Rn.21198.1 /TIER=ConsEnd /STK=3 /UG=Rn.21198 /UG_TITLE=ESTs, Weakly similar to T21860 hypothetical protein F36F2.1 - Caenorhabditis elegans (C.elegans) AI172339 actin-binding Rho activating protein Abra 286965 NM_175844 0000060 // protein import into nucleus, translocation // inferred from electronic annotation /// 0000060 // protein import into nucleus, translocation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0035025 // positive regulation of Rho protein signal transduction // not recorded /// 0035025 // positive regulation of Rho protein signal transduction // inferred from sequence or structural similarity /// 0035025 // positive regulation of Rho protein signal transduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0051091 // positive regulation of transcription factor activity // inferred from sequence or structural similarity /// 0051091 // positive regulation of transcription factor activity // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0015629 // actin cytoskeleton // not recorded /// 0015629 // actin cytoskeleton // inferred from sequence or structural similarity /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0030016 // myofibril // not recorded /// 0030016 // myofibril // inferred from electronic annotation /// 0030017 // sarcomere // inferred from direct assay /// 0030017 // sarcomere // inferred from electronic annotation 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0003779 // actin binding // not recorded /// 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // inferred from electronic annotation 1390882_at AI101924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101924 /DB_XREF=gi:3706767 /DB_XREF=EST211213 /CLONE=RBRBW91 /FEA=EST /CNT=5 /TID=Rn.22252.1 /TIER=ConsEnd /STK=3 /UG=Rn.22252 /UG_TITLE=ESTs AI101924 hairy/enhancer-of-split related with YRPW motif-like Heyl 313575 NM_001107977 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1390883_at AI501759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501759 /DB_XREF=gi:4399610 /DB_XREF=UI-R-C2p-se-g-09-0-UI.s1 /CLONE=UI-R-C2p-se-g-09-0-UI /FEA=EST /CNT=5 /TID=Rn.20277.1 /TIER=ConsEnd /STK=3 /UG=Rn.20277 /UG_TITLE=ESTs AI501759 A kinase (PRKA) anchor protein 11 Akap11 498549 NM_012773 0010738 // regulation of protein kinase A signaling cascade // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0019207 // kinase regulator activity // inferred from direct assay /// 0032947 // protein complex scaffold // inferred from mutant phenotype /// 0034237 // protein kinase A regulatory subunit binding // inferred from direct assay 1390884_a_at BE098162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098162 /DB_XREF=gi:8489990 /DB_XREF=UI-R-BJ1-ata-b-10-0-UI.s1 /CLONE=UI-R-BJ1-ata-b-10-0-UI /FEA=EST /CNT=5 /TID=Rn.39638.1 /TIER=ConsEnd /STK=3 /UG=Rn.39638 /UG_TITLE=ESTs BE098162 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 B3gnt7 316583 NM_001012134 0006486 // protein glycosylation // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008378 // galactosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1390885_at AW535696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535696 /DB_XREF=gi:7178110 /DB_XREF=UI-R-BS0-anz-h-12-0-UI.s1 /CLONE=UI-R-BS0-anz-h-12-0-UI /FEA=EST /CNT=5 /TID=Rn.35036.1 /TIER=ConsEnd /STK=3 /UG=Rn.35036 /UG_TITLE=ESTs AW535696 1390886_at BE111565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111565 /DB_XREF=gi:8503670 /DB_XREF=UI-R-BJ1-avc-c-07-0-UI.s1 /CLONE=UI-R-BJ1-avc-c-07-0-UI /FEA=EST /CNT=5 /TID=Rn.7030.1 /TIER=ConsEnd /STK=3 /UG=Rn.7030 /UG_TITLE=ESTs BE111565 Coiled-coil domain containing 39 Ccdc39 310315 NM_001107667 1390887_at AI105458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105458 /DB_XREF=gi:3709534 /DB_XREF=EST214747 /CLONE=RKIBK67 /FEA=EST /CNT=5 /TID=Rn.22501.1 /TIER=ConsEnd /STK=3 /UG=Rn.22501 /UG_TITLE=ESTs AI105458 Similar to CG13957-PA RGD1309995 314690 XM_001076152 /// XM_235003 0016197 // endosome transport // not recorded 0071203 // WASH complex // not recorded 1390888_a_at AI233704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233704 /DB_XREF=gi:4135898 /DB_XREF=EST230392 /CLONE=RKIDJ13 /FEA=EST /CNT=5 /TID=Rn.37790.1 /TIER=ConsEnd /STK=3 /UG=Rn.37790 /UG_TITLE=ESTs AI233704 HemK methyltransferase family member 1 Hemk1 300989 NM_001106853 0006479 // protein methylation // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008276 // protein methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1390889_at AI102132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102132 /DB_XREF=gi:3706948 /DB_XREF=EST211421 /CLONE=RBRBZ55 /FEA=EST /CNT=5 /TID=Rn.19752.1 /TIER=ConsEnd /STK=3 /UG=Rn.19752 /UG_TITLE=ESTs AI102132 hypothetical protein LOC691543 LOC691543 691543 NM_001109645 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 1390890_at AI406854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406854 /DB_XREF=gi:4250358 /DB_XREF=EST235141 /CLONE=ROVDW61 /FEA=EST /CNT=5 /TID=Rn.13163.1 /TIER=ConsEnd /STK=3 /UG=Rn.13163 /UG_TITLE=ESTs AI406854 1390891_at BE116384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116384 /DB_XREF=gi:8508489 /DB_XREF=UI-R-BS1-ayc-f-04-0-UI.s1 /CLONE=UI-R-BS1-ayc-f-04-0-UI /FEA=EST /CNT=5 /TID=Rn.12560.1 /TIER=ConsEnd /STK=3 /UG=Rn.12560 /UG_TITLE=ESTs, Weakly similar to EG5_HUMAN KINESIN-RELATED MOTOR PROTEIN EG5 (H.sapiens) BE116384 kinesin family member 11 Kif11 171304 NM_001169112 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007051 // spindle organization // inferred from electronic annotation /// 0007051 // spindle organization // not recorded /// 0007100 // mitotic centrosome separation // inferred from electronic annotation /// 0007100 // mitotic centrosome separation // not recorded 0000922 // spindle pole // inferred from electronic annotation /// 0000922 // spindle pole // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded /// 0016585 // chromatin remodeling complex // inferred from electronic annotation /// 0016585 // chromatin remodeling complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1390892_at AA899893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899893 /DB_XREF=gi:4232385 /DB_XREF=UI-R-E0-ck-d-12-0-UI.s2 /CLONE=UI-R-E0-ck-d-12-0-UI /FEA=EST /CNT=5 /TID=Rn.14993.1 /TIER=ConsEnd /STK=3 /UG=Rn.14993 /UG_TITLE=ESTs AA899893 DEP domain containing 1B Depdc1b 310074 NM_001107651 0007165 // signal transduction // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 1390893_at BF284878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284878 /DB_XREF=gi:11215948 /DB_XREF=EST449469 /CLONE=RGIEX36 /FEA=EST /CNT=5 /TID=Rn.24175.1 /TIER=ConsEnd /STK=3 /UG=Rn.24175 /UG_TITLE=ESTs BF284878 transmembrane protein 69 Tmem69 619582 NM_001035001 0016021 // integral to membrane // inferred from electronic annotation 1390894_at BF285264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285264 /DB_XREF=gi:11216334 /DB_XREF=EST449855 /CLONE=RGIFC63 /FEA=EST /CNT=5 /TID=Rn.42362.1 /TIER=ConsEnd /STK=3 /UG=Rn.42362 /UG_TITLE=ESTs, Weakly similar to YG2S_YEAST Hypothetical 69.9 kDa protein in MIC1-SRB5 intergenic region (S.cerevisiae) BF285264 1390895_at AA957047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957047 /DB_XREF=gi:4239520 /DB_XREF=UI-R-E1-ge-a-08-0-UI.s1 /CLONE=UI-R-E1-ge-a-08-0-UI /FEA=EST /CNT=5 /TID=Rn.11727.1 /TIER=ConsEnd /STK=3 /UG=Rn.11727 /UG_TITLE=ESTs AA957047 hypothetical LOC302495 LOC302495 302495 NM_001106950 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1390896_at AW524502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524502 /DB_XREF=gi:7166887 /DB_XREF=UI-R-BO0-ahz-b-11-0-UI.s1 /CLONE=UI-R-BO0-ahz-b-11-0-UI /FEA=EST /CNT=5 /TID=Rn.28213.1 /TIER=ConsEnd /STK=3 /UG=Rn.28213 /UG_TITLE=ESTs AW524502 1390897_at AI011572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011572 /DB_XREF=gi:3225404 /DB_XREF=EST206023 /CLONE=ROVAW81 /FEA=EST /CNT=5 /TID=Rn.17265.1 /TIER=ConsEnd /STK=3 /UG=Rn.17265 /UG_TITLE=ESTs, Highly similar to KIAA0738 protein (H.sapiens) AI011572 Similar to mKIAA0738 protein RGD1565474 362353 XM_001072497 /// XM_342675 1390898_at BE111116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111116 /DB_XREF=gi:8503221 /DB_XREF=UI-R-BJ1-auz-g-10-0-UI.s1 /CLONE=UI-R-BJ1-auz-g-10-0-UI /FEA=EST /CNT=5 /TID=Rn.34825.1 /TIER=ConsEnd /STK=3 /UG=Rn.34825 /UG_TITLE=ESTs BE111116 1390899_at BE115269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115269 /DB_XREF=gi:8507374 /DB_XREF=UI-R-CA0-axr-c-08-0-UI.s1 /CLONE=UI-R-CA0-axr-c-08-0-UI /FEA=EST /CNT=5 /TID=Rn.52480.1 /TIER=ConsEnd /STK=3 /UG=Rn.52480 /UG_TITLE=ESTs BE115269 leucine rich repeat transmembrane neuronal 1 LRRTM1 679668 NM_001109374 0005783 // endoplasmic reticulum // not recorded /// 0009986 // cell surface // not recorded /// 0030424 // axon // not recorded /// 0030426 // growth cone // not recorded 0005515 // protein binding // inferred from electronic annotation 1390900_at BI290628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290628 /DB_XREF=gi:14949377 /DB_XREF=UI-R-DK0-cfx-e-03-0-UI.s1 /CLONE=UI-R-DK0-cfx-e-03-0-UI /FEA=EST /CNT=5 /TID=Rn.43563.1 /TIER=ConsEnd /STK=3 /UG=Rn.43563 /UG_TITLE=ESTs BI290628 AT rich interactive domain 3A (Bright like) Arid3a 314616 NM_001108066 0005622 // intracellular // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1390901_at BF543355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543355 /DB_XREF=gi:11634462 /DB_XREF=UI-R-Y0-abg-f-10-0-UI.r1 /CLONE=UI-R-Y0-abg-f-10-0-UI /FEA=EST /CNT=5 /TID=Rn.23485.1 /TIER=ConsEnd /STK=3 /UG=Rn.23485 /UG_TITLE=ESTs BF543355 immunoglobulin superfamily, member 10 Igsf10 310448 NM_198768 0001503 // ossification // inferred from direct assay /// 0001503 // ossification // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042246 // tissue regeneration // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation 1390902_at BI275056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275056 /DB_XREF=gi:14886546 /DB_XREF=UI-R-CX0-bxb-b-05-0-UI.s1 /CLONE=UI-R-CX0-bxb-b-05-0-UI /FEA=EST /CNT=5 /TID=Rn.35394.1 /TIER=ConsEnd /STK=3 /UG=Rn.35394 /UG_TITLE=ESTs BI275056 1390903_at AI105410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105410 /DB_XREF=gi:3709496 /DB_XREF=EST214699 /CLONE=RKIBJ91 /FEA=EST /CNT=5 /TID=Rn.23861.1 /TIER=ConsEnd /STK=3 /UG=Rn.23861 /UG_TITLE=ESTs AI105410 1390904_at AW530219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530219 /DB_XREF=gi:7172633 /DB_XREF=UI-R-BU0-amu-a-04-0-UI.s1 /CLONE=UI-R-BU0-amu-a-04-0-UI /FEA=EST /CNT=5 /TID=Rn.47407.1 /TIER=ConsEnd /STK=3 /UG=Rn.47407 /UG_TITLE=ESTs, Highly similar to I78376 ryanodine receptor - mouse (M.musculus) AW530219 ryanodine receptor 1-like Ryr1l 114207 XM_001078539 /// XM_341818 0001666 // response to hypoxia // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006936 // muscle contraction // inferred from electronic annotation /// 0031000 // response to caffeine // inferred from direct assay /// 0051209 // release of sequestered calcium ion into cytosol // inferred from electronic annotation /// 0051209 // release of sequestered calcium ion into cytosol // inferred from direct assay /// 0051480 // cytosolic calcium ion homeostasis // inferred from direct assay /// 0055085 // transmembrane transport // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0030314 // junctional membrane complex // inferred from electronic annotation /// 0030315 // T-tubule // inferred from electronic annotation /// 0031674 // I band // inferred from electronic annotation /// 0033017 // sarcoplasmic reticulum membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005219 // ryanodine-sensitive calcium-release channel activity // inferred from direct assay /// 0005219 // ryanodine-sensitive calcium-release channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1390905_at AW533482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533482 /DB_XREF=gi:7175896 /DB_XREF=UI-R-BU0-ani-d-09-0-UI.s1 /CLONE=UI-R-BU0-ani-d-09-0-UI /FEA=EST /CNT=5 /TID=Rn.43251.1 /TIER=ConsEnd /STK=3 /UG=Rn.43251 /UG_TITLE=ESTs AW533482 Microtubule associated serine/threonine kinase family member 4 Mast4 310040 XM_001063274 /// XM_226732 0006468 // protein phosphorylation // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1390906_at BE100932 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100932 /DB_XREF=gi:8492834 /DB_XREF=UI-R-BJ1-aug-b-10-0-UI.s1 /CLONE=UI-R-BJ1-aug-b-10-0-UI /FEA=EST /CNT=5 /TID=Rn.47689.1 /TIER=ConsEnd /STK=3 /UG=Rn.47689 /UG_TITLE=ESTs BE100932 1390907_at AI145039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145039 /DB_XREF=gi:3666838 /DB_XREF=UI-R-BT0-pr-h-10-0-UI.s1 /CLONE=UI-R-BT0-pr-h-10-0-UI /FEA=EST /CNT=5 /TID=Rn.13098.1 /TIER=ConsEnd /STK=3 /UG=Rn.13098 /UG_TITLE=ESTs AI145039 Similar to zinc finger protein 84 (HPF2) LOC691170 691170 XM_001077082 /// XM_002726875 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390908_at AI229606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229606 /DB_XREF=gi:3813493 /DB_XREF=EST226301 /CLONE=REMCJ26 /FEA=EST /CNT=5 /TID=Rn.24477.1 /TIER=ConsEnd /STK=3 /UG=Rn.24477 /UG_TITLE=ESTs AI229606 1390909_at AI171480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171480 /DB_XREF=gi:3711520 /DB_XREF=EST217442 /CLONE=RMUBL47 /FEA=EST /CNT=5 /TID=Rn.17796.1 /TIER=ConsEnd /STK=3 /UG=Rn.17796 /UG_TITLE=ESTs AI171480 1390910_at BF408406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408406 /DB_XREF=gi:11396381 /DB_XREF=UI-R-BJ2-brc-d-05-0-UI.s1 /CLONE=UI-R-BJ2-brc-d-05-0-UI /FEA=EST /CNT=5 /TID=Rn.23297.1 /TIER=ConsEnd /STK=3 /UG=Rn.23297 /UG_TITLE=ESTs, Highly similar to SES3_MOUSE Sestrin 3 (5630400E15Rik) (M.musculus) BF408406 Sestrin 3 Sesn3 315427 NM_001108125 0007050 // cell cycle arrest // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1390911_at AW916020 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916020 /DB_XREF=gi:8081735 /DB_XREF=EST347324 /CLONE=RGIDF01 /FEA=EST /CNT=5 /TID=Rn.15400.1 /TIER=ConsEnd /STK=3 /UG=Rn.15400 /UG_TITLE=ESTs AW916020 1390912_at BE101168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101168 /DB_XREF=gi:8493078 /DB_XREF=UI-R-BJ1-auh-h-04-0-UI.s1 /CLONE=UI-R-BJ1-auh-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.61111.1 /TIER=ConsEnd /STK=3 /UG=Rn.61111 /UG_TITLE=ESTs BE101168 Purkinje cell protein 4-like 1 Pcp4l1 685448 NM_001126093 1390913_at AW435463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435463 /DB_XREF=gi:6966770 /DB_XREF=UI-R-BJ0p-afu-g-06-0-UI.s1 /CLONE=UI-R-BJ0p-afu-g-06-0-UI /FEA=EST /CNT=5 /TID=Rn.25454.1 /TIER=ConsEnd /STK=3 /UG=Rn.25454 /UG_TITLE=ESTs AW435463 1390914_at AI071474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071474 /DB_XREF=gi:3397689 /DB_XREF=UI-R-C1-ku-h-05-0-UI.s2 /CLONE=UI-R-C1-ku-h-05-0-UI /FEA=EST /CNT=5 /TID=Rn.20543.1 /TIER=ConsEnd /STK=3 /UG=Rn.20543 /UG_TITLE=ESTs, Highly similar to FLI1 MOUSE RETROVIRAL INTEGRATION SITE PROTEIN FLI-1 (M.musculus) AI071474 Friend leukemia virus integration 1 Fli1 315532 NM_001017381 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0008015 // blood circulation // inferred from electronic annotation /// 0008015 // blood circulation // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1390915_at BI275327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275327 /DB_XREF=gi:14887082 /DB_XREF=UI-R-CX0-bwu-c-05-0-UI.s1 /CLONE=UI-R-CX0-bwu-c-05-0-UI /FEA=EST /CNT=5 /TID=Rn.15934.1 /TIER=ConsEnd /STK=3 /UG=Rn.15934 /UG_TITLE=ESTs BI275327 MORC family CW-type zinc finger 4 Morc4 315914 XM_001053814 /// XM_002726191 /// XM_002730290 /// XM_236536 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1390916_at AI407187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407187 /DB_XREF=gi:4250691 /DB_XREF=EST235475 /CLONE=ROVDW26 /FEA=EST /CNT=5 /TID=Rn.56085.1 /TIER=ConsEnd /STK=3 /UG=Rn.56085 /UG_TITLE=ESTs AI407187 histocompatibility 13 H13 311545 NM_001107789 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390917_at AI227828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227828 /DB_XREF=gi:3811715 /DB_XREF=EST224523 /CLONE=RBRCM25 /FEA=EST /CNT=5 /TID=Rn.24268.1 /TIER=ConsEnd /STK=3 /UG=Rn.24268 /UG_TITLE=ESTs AI227828 1390918_at BE099056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099056 /DB_XREF=gi:8490932 /DB_XREF=UI-R-BJ1-atf-g-12-0-UI.s1 /CLONE=UI-R-BJ1-atf-g-12-0-UI /FEA=EST /CNT=5 /TID=Rn.19589.1 /TIER=ConsEnd /STK=3 /UG=Rn.19589 /UG_TITLE=ESTs, Weakly similar to T48686 hypothetical protein DKFZp761D1823.1 (H.sapiens) BE099056 growth hormone regulated TBC protein 1 Grtp1 361180 NM_001031813 /// NM_001170477 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// 0051725 // protein de-ADP-ribosylation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003875 // ADP-ribosylarginine hydrolase activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1390919_at AI230176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230176 /DB_XREF=gi:4135520 /DB_XREF=EST226871 /CLONE=REMCT26 /FEA=EST /CNT=5 /TID=Rn.24495.1 /TIER=ConsEnd /STK=3 /UG=Rn.24495 /UG_TITLE=ESTs, Moderately similar to B54037 splicing regulatory protein SWAP homolog (H.sapiens) AI230176 1390920_at AI145802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145802 /DB_XREF=gi:3667601 /DB_XREF=UI-R-BT0-qi-d-11-0-UI.s1 /CLONE=UI-R-BT0-qi-d-11-0-UI /FEA=EST /CNT=5 /TID=Rn.43603.1 /TIER=ConsEnd /STK=3 /UG=Rn.43603 /UG_TITLE=ESTs AI145802 1390921_at BG373223 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373223 /DB_XREF=gi:13269760 /DB_XREF=UI-R-CV1-brw-b-10-0-UI.s1 /CLONE=UI-R-CV1-brw-b-10-0-UI /FEA=EST /CNT=5 /TID=Rn.3245.1 /TIER=ConsEnd /STK=3 /UG=Rn.3245 /UG_TITLE=ESTs BG373223 1390922_at AA957926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957926 /DB_XREF=gi:4277816 /DB_XREF=UI-R-E1-fv-d-03-0-UI.s1 /CLONE=UI-R-E1-fv-d-03-0-UI /FEA=EST /CNT=6 /TID=Rn.9421.1 /TIER=ConsEnd /STK=3 /UG=Rn.9421 /UG_TITLE=ESTs AA957926 1390923_a_at AI137224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137224 /DB_XREF=gi:3638001 /DB_XREF=UI-R-C2p-oj-f-11-0-UI.s1 /CLONE=UI-R-C2p-oj-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.19873.2 /TIER=ConsEnd /STK=2 /UG=Rn.19873 /UG_TITLE=ESTs, Weakly similar to T02435 probable oxysterol-binding protein DJ430N08.1 (H.sapiens) AI137224 oxysterol binding protein-like 1A Osbpl1a 259221 NM_172023 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation 1390924_at BE109165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109165 /DB_XREF=gi:8501270 /DB_XREF=UI-R-BS1-azb-f-09-0-UI.s1 /CLONE=UI-R-BS1-azb-f-09-0-UI /FEA=EST /CNT=6 /TID=Rn.45566.1 /TIER=ConsEnd /STK=3 /UG=Rn.45566 /UG_TITLE=ESTs BE109165 TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor LOC100360100 100360100 XM_002725301 /// XM_002728492 1390925_a_at AI043758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043758 /DB_XREF=gi:3290493 /DB_XREF=UI-R-C0-jm-b-11-0-UI.s1 /CLONE=UI-R-C0-jm-b-11-0-UI /FEA=EST /CNT=1 /TID=Rn.23173.3 /TIER=ConsEnd /STK=0 /UG=Rn.23173 /UG_TITLE=ESTs AI043758 immunoglobulin superfamily, member 3 Igsf3 295325 NM_001106455 1390926_at BM385609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385609 /DB_XREF=gi:18185662 /DB_XREF=UI-R-DM1-ckd-j-15-0-UI.s1 /CLONE=UI-R-DM1-ckd-j-15-0-UI /FEA=EST /CNT=5 /TID=Rn.17497.1 /TIER=ConsEnd /STK=3 /UG=Rn.17497 /UG_TITLE=ESTs BM385609 zinc finger, SWIM-type containing 3 Zswim3 311630 NM_001107801 0008270 // zinc ion binding // inferred from electronic annotation 1390927_at AI176779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176779 /DB_XREF=gi:3727417 /DB_XREF=EST220374 /CLONE=ROVBW68 /FEA=EST /CNT=5 /TID=Rn.15642.1 /TIER=ConsEnd /STK=3 /UG=Rn.15642 /UG_TITLE=ESTs AI176779 hypothetical protein LOC654482 LOC654482 654482 NM_001039174 1390928_at AI228340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228340 /DB_XREF=gi:3812227 /DB_XREF=EST225035 /CLONE=RBRCT48 /FEA=EST /CNT=5 /TID=Rn.18093.1 /TIER=ConsEnd /STK=3 /UG=Rn.18093 /UG_TITLE=ESTs, Weakly similar to 2204383A jerky gene (M.musculus) AI228340 similar to tigger transposable element derived 2 RGD1559612 500150 XM_002726369 /// XM_002729319 0045449 // regulation of transcription // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation 1390929_at BI275447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275447 /DB_XREF=gi:14887312 /DB_XREF=UI-R-CX0-bww-f-01-0-UI.s1 /CLONE=UI-R-CX0-bww-f-01-0-UI /FEA=EST /CNT=5 /TID=Rn.61546.1 /TIER=ConsEnd /STK=3 /UG=Rn.61546 /UG_TITLE=ESTs BI275447 1390930_at BF406924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406924 /DB_XREF=gi:11394939 /DB_XREF=UI-R-BJ2-bpq-b-03-0-UI.s1 /CLONE=UI-R-BJ2-bpq-b-03-0-UI /FEA=EST /CNT=5 /TID=Rn.24769.1 /TIER=ConsEnd /STK=3 /UG=Rn.24769 /UG_TITLE=ESTs BF406924 1390931_at AI704285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI704285 /DB_XREF=gi:4992185 /DB_XREF=UI-R-AF0-yf-a-05-0-UI.s1 /CLONE=UI-R-AF0-yf-a-05-0-UI /FEA=EST /CNT=5 /TID=Rn.41227.1 /TIER=ConsEnd /STK=3 /UG=Rn.41227 /UG_TITLE=ESTs AI704285 ADAM metallopeptidase with thrombospondin type 1 motif, 15 Adamts15 300474 NM_001106810 0006508 // proteolysis // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390932_at AA875255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875255 /DB_XREF=gi:4231133 /DB_XREF=UI-R-E0-cq-d-10-0-UI.s1 /CLONE=UI-R-E0-cq-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.2849.1 /TIER=ConsEnd /STK=3 /UG=Rn.2849 /UG_TITLE=ESTs AA875255 1390933_a_at BF283097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283097 /DB_XREF=gi:11214167 /DB_XREF=EST447688 /CLONE=RGIDX49 /FEA=EST /CNT=5 /TID=Rn.56147.1 /TIER=ConsEnd /STK=3 /UG=Rn.56147 /UG_TITLE=ESTs BF283097 RNA (guanine-9-) methyltransferase domain containing 3 Rg9mtd3 298081 NM_001013090 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1390934_at AW251306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251306 /DB_XREF=gi:6594897 /DB_XREF=UI-R-BJ0-adg-f-04-0-UI.s1 /CLONE=UI-R-BJ0-adg-f-04-0-UI /FEA=EST /CNT=5 /TID=Rn.40619.1 /TIER=ConsEnd /STK=3 /UG=Rn.40619 /UG_TITLE=ESTs AW251306 1390935_at AI407723 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407723 /DB_XREF=gi:4251227 /DB_XREF=EST236013 /CLONE=ROVDS55 /FEA=EST /CNT=5 /TID=Rn.49013.1 /TIER=ConsEnd /STK=3 /UG=Rn.49013 /UG_TITLE=ESTs AI407723 1390936_at BE120691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120691 /DB_XREF=gi:8512796 /DB_XREF=UI-R-CA0-bay-d-09-0-UI.s1 /CLONE=UI-R-CA0-bay-d-09-0-UI /FEA=EST /CNT=5 /TID=Rn.43659.1 /TIER=ConsEnd /STK=3 /UG=Rn.43659 /UG_TITLE=ESTs, Moderately similar to S61552 mammary tumor protein mat8 precursor - mouse (M.musculus) BE120691 Leucine-rich repeat LGI family, member 4 Lgi4 361549 NM_199499 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0022011 // myelination in peripheral nervous system // inferred from electronic annotation /// 0022011 // myelination in peripheral nervous system // not recorded /// 0042551 // neuron maturation // inferred from electronic annotation /// 0042551 // neuron maturation // not recorded /// 0042552 // myelination // not recorded /// 0042552 // myelination // inferred from electronic annotation 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005515 // protein binding // inferred from electronic annotation 1390937_at AW523875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523875 /DB_XREF=gi:7166260 /DB_XREF=UI-R-BO0-aie-a-06-0-UI.s1 /CLONE=UI-R-BO0-aie-a-06-0-UI /FEA=EST /CNT=5 /TID=Rn.3331.1 /TIER=ConsEnd /STK=3 /UG=Rn.3331 /UG_TITLE=ESTs AW523875 similar to chromosome 14 open reading frame 50 RGD1309051 299153 NM_001013944 1390938_at BI276015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276015 /DB_XREF=gi:14920511 /DB_XREF=UI-R-CW0-bwn-b-03-0-UI.s1 /CLONE=UI-R-CW0-bwn-b-03-0-UI /FEA=EST /CNT=5 /TID=Rn.14693.1 /TIER=ConsEnd /STK=3 /UG=Rn.14693 /UG_TITLE=ESTs BI276015 Rho GTPase activating protein 28 Arhgap28 301709 NM_001191815 /// XM_001054365 /// XM_237535 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 1390939_at AA944518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944518 /DB_XREF=gi:3104434 /DB_XREF=EST200017 /CLONE=REMAK48 /FEA=EST /CNT=5 /TID=Rn.34351.1 /TIER=ConsEnd /STK=3 /UG=Rn.34351 /UG_TITLE=ESTs AA944518 1390940_at AW529031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529031 /DB_XREF=gi:7171485 /DB_XREF=UI-R-BT1-aka-g-06-0-UI.s1 /CLONE=UI-R-BT1-aka-g-06-0-UI /FEA=EST /CNT=5 /TID=Rn.47737.1 /TIER=ConsEnd /STK=3 /UG=Rn.47737 /UG_TITLE=ESTs, Weakly similar to JC4934 delta-crystallinE2-box factor 1 - mouse (M.musculus) AW529031 zinc finger E-box binding homeobox 2 Zeb2 311071 NM_001033701 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001756 // somitogenesis // not recorded /// 0001843 // neural tube closure // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0021846 // cell proliferation in forebrain // inferred from electronic annotation /// 0021846 // cell proliferation in forebrain // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0030177 // positive regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0043507 // positive regulation of JUN kinase activity // inferred from electronic annotation /// 0043507 // positive regulation of JUN kinase activity // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048598 // embryonic morphogenesis // inferred from electronic annotation /// 0048598 // embryonic morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1390941_at BI277540 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277540 /DB_XREF=gi:14923512 /DB_XREF=UI-R-CY0-bxs-d-09-0-UI.s1 /CLONE=UI-R-CY0-bxs-d-09-0-UI /FEA=EST /CNT=5 /TID=Rn.42854.1 /TIER=ConsEnd /STK=3 /UG=Rn.42854 /UG_TITLE=ESTs, Moderately similar to T42727 proliferation potential-related protein - mouse (M.musculus) BI277540 retinoblastoma binding protein 6 Rbbp6 308968 XM_001073098 /// XM_001076339 /// XM_001076360 /// XM_219296 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1390942_at AI043817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043817 /DB_XREF=gi:3290552 /DB_XREF=UI-R-C0-jj-e-06-0-UI.s1 /CLONE=UI-R-C0-jj-e-06-0-UI /FEA=EST /CNT=5 /TID=Rn.17373.1 /TIER=ConsEnd /STK=3 /UG=Rn.17373 /UG_TITLE=ESTs AI043817 Pellino 2 Peli2 305835 NM_001107259 0005829 // cytosol // not recorded /// 0016020 // membrane // not recorded /// 0043234 // protein complex // not recorded 0005515 // protein binding // not recorded 1390943_at BE096504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096504 /DB_XREF=gi:8487435 /DB_XREF=UI-R-BU0-apg-h-07-0-UI.s1 /CLONE=UI-R-BU0-apg-h-07-0-UI /FEA=EST /CNT=5 /TID=Rn.22531.1 /TIER=ConsEnd /STK=3 /UG=Rn.22531 /UG_TITLE=ESTs, Weakly similar to A47328 natural killer cell tumor-recognition protein (H.sapiens) BE096504 similar to chromosome 1 open reading frame 63 RGD1359529 362626 NM_001014193 1390944_at BM384937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384937 /DB_XREF=gi:18184990 /DB_XREF=UI-R-CN1-cjl-f-02-0-UI.s2 /CLONE=UI-R-CN1-cjl-f-02-0-UI /FEA=EST /CNT=4 /TID=Rn.65511.1 /TIER=ConsEnd /STK=3 /UG=Rn.65511 /UG_TITLE=ESTs BM384937 chromatin modifying protein 4C Chmp4c 361916 NM_001017466 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390945_at BI294878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294878 /DB_XREF=gi:14957762 /DB_XREF=UI-R-DK0-ced-b-12-0-UI.s1 /CLONE=UI-R-DK0-ced-b-12-0-UI /FEA=EST /CNT=4 /TID=Rn.49389.1 /TIER=ConsEnd /STK=3 /UG=Rn.49389 /UG_TITLE=ESTs BI294878 zinc finger protein 292 Znf292 50552 NM_001008879 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008134 // transcription factor binding // non-traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay 1390946_at AI709792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709792 /DB_XREF=gi:4999568 /DB_XREF=UI-R-C3-tj-g-01-0-UI.s1 /CLONE=UI-R-C3-tj-g-01-0-UI /FEA=EST /CNT=4 /TID=Rn.34220.1 /TIER=ConsEnd /STK=3 /UG=Rn.34220 /UG_TITLE=ESTs AI709792 1390947_at AA891255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891255 /DB_XREF=gi:3018134 /DB_XREF=EST195058 /CLONE=RHEAR54 /FEA=EST /CNT=4 /TID=Rn.7269.1 /TIER=ConsEnd /STK=3 /UG=Rn.7269 /UG_TITLE=ESTs AA891255 HEAT repeat containing 5A Heatr5a 362737 XM_001075318 /// XM_343061 0005488 // binding // inferred from electronic annotation 1390948_at AI058307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058307 /DB_XREF=gi:3332084 /DB_XREF=UI-R-C1-kl-f-09-0-UI.s1 /CLONE=UI-R-C1-kl-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.9294.1 /TIER=ConsEnd /STK=3 /UG=Rn.9294 /UG_TITLE=ESTs AI058307 pan hematopoietic expression Phemx 365390 XM_002725757 /// XM_002728846 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1390949_at BE117624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117624 /DB_XREF=gi:8509729 /DB_XREF=UI-R-BS1-aze-a-05-0-UI.s1 /CLONE=UI-R-BS1-aze-a-05-0-UI /FEA=EST /CNT=4 /TID=Rn.41819.1 /TIER=ConsEnd /STK=3 /UG=Rn.41819 /UG_TITLE=ESTs BE117624 1390950_at AI234865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234865 /DB_XREF=gi:3828371 /DB_XREF=EST231427 /CLONE=ROVCI80 /FEA=EST /CNT=4 /TID=Rn.40491.1 /TIER=ConsEnd /STK=3 /UG=Rn.40491 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) AI234865 1390951_at BE107735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107735 /DB_XREF=gi:8499840 /DB_XREF=UI-R-CA0-aww-c-10-0-UI.s1 /CLONE=UI-R-CA0-aww-c-10-0-UI /FEA=EST /CNT=4 /TID=Rn.9566.1 /TIER=ConsEnd /STK=3 /UG=Rn.9566 /UG_TITLE=ESTs BE107735 1390952_at AI144822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144822 /DB_XREF=gi:3666621 /DB_XREF=UI-R-BT0-pm-c-06-0-UI.s1 /CLONE=UI-R-BT0-pm-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.36021.1 /TIER=ConsEnd /STK=3 /UG=Rn.36021 /UG_TITLE=ESTs AI144822 REST corepressor 1 Rcor1 314458 NM_001108060 0005515 // protein binding // not recorded 1390953_at BE111052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111052 /DB_XREF=gi:8503157 /DB_XREF=UI-R-BJ1-auz-b-02-0-UI.s1 /CLONE=UI-R-BJ1-auz-b-02-0-UI /FEA=EST /CNT=4 /TID=Rn.53921.1 /TIER=ConsEnd /STK=3 /UG=Rn.53921 /UG_TITLE=ESTs BE111052 zinc finger and BTB domain containing 11 Zbtb11 304010 NM_001107097 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390954_at AI548159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548159 /DB_XREF=gi:4465647 /DB_XREF=UI-R-C3-su-a-05-0-UI.s1 /CLONE=UI-R-C3-su-a-05-0-UI /FEA=EST /CNT=4 /TID=Rn.34709.1 /TIER=ConsEnd /STK=3 /UG=Rn.34709 /UG_TITLE=ESTs AI548159 protein phosphatase 1H (PP2C domain containing) Ppm1h 314897 XM_002726914 /// XM_002729796 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1390955_at BM388717 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388717 /DB_XREF=gi:18188770 /DB_XREF=UI-R-DZ0-ckm-j-16-0-UI.s1 /CLONE=UI-R-DZ0-ckm-j-16-0-UI /FEA=EST /CNT=4 /TID=Rn.77463.1 /TIER=ConsEnd /STK=3 /UG=Rn.77463 /UG_TITLE=ESTs BM388717 pannexin 3 Panx3 315567 NM_199398 0007267 // cell-cell signaling // inferred from mutant phenotype 0005886 // plasma membrane // inferred from electronic annotation /// 0005921 // gap junction // inferred from mutant phenotype /// 0005921 // gap junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 1390956_at BI294909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294909 /DB_XREF=gi:14957824 /DB_XREF=UI-R-DK0-ced-e-09-0-UI.s1 /CLONE=UI-R-DK0-ced-e-09-0-UI /FEA=EST /CNT=4 /TID=Rn.35355.1 /TIER=ConsEnd /STK=3 /UG=Rn.35355 /UG_TITLE=ESTs BI294909 Apolipoprotein L 11a Apol11a 300060 XR_085883 /// XR_086306 1390957_at AI112360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112360 /DB_XREF=gi:3512309 /DB_XREF=UI-R-Y0-mn-c-01-0-UI.s1 /CLONE=UI-R-Y0-mn-c-01-0-UI /FEA=EST /CNT=4 /TID=Rn.26760.1 /TIER=ConsEnd /STK=3 /UG=Rn.26760 /UG_TITLE=ESTs AI112360 similar to Protein C14orf101 homolog RGD1562018 361030 NM_001170475 1390958_at AW528339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528339 /DB_XREF=gi:7170753 /DB_XREF=UI-R-BT1-ajx-d-01-0-UI.s1 /CLONE=UI-R-BT1-ajx-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.46844.1 /TIER=ConsEnd /STK=3 /UG=Rn.46844 /UG_TITLE=ESTs AW528339 hypothetical protein LOC690333 LOC690333 690333 NM_001109580 1390959_at AA925423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925423 /DB_XREF=gi:4236614 /DB_XREF=UI-R-A1-ek-d-11-0-UI.s1 /CLONE=UI-R-A1-ek-d-11-0-UI /FEA=EST /CNT=4 /TID=Rn.31834.1 /TIER=ConsEnd /STK=3 /UG=Rn.31834 /UG_TITLE=ESTs AA925423 hypothetical protein LOC684830 LOC684830 684830 XM_001072100 0005488 // binding // inferred from electronic annotation 1390960_at AA893602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893602 /DB_XREF=gi:3020481 /DB_XREF=EST197405 /CLONE=RPLAC44 /FEA=EST /CNT=4 /TID=Rn.14812.1 /TIER=ConsEnd /STK=3 /UG=Rn.14812 /UG_TITLE=ESTs AA893602 1390961_at AW525132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525132 /DB_XREF=gi:7167517 /DB_XREF=UI-R-BJ0p-aio-b-08-0-UI.s1 /CLONE=UI-R-BJ0p-aio-b-08-0-UI /FEA=EST /CNT=4 /TID=Rn.9617.1 /TIER=ConsEnd /STK=3 /UG=Rn.9617 /UG_TITLE=ESTs, Weakly similar to GPBB MOUSE PLATELET GLYCOPROTEIN IB BETA CHAIN PRECURSOR (M.musculus) AW525132 glycoprotein IX (platelet) Gp9 502858 NM_001031825 0005886 // plasma membrane // not recorded /// 0031092 // platelet alpha granule membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390962_at BM385344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385344 /DB_XREF=gi:18185397 /DB_XREF=UI-R-CN1-clv-i-08-0-UI.s1 /CLONE=UI-R-CN1-clv-i-08-0-UI /FEA=EST /CNT=4 /TID=Rn.17019.1 /TIER=ConsEnd /STK=3 /UG=Rn.17019 /UG_TITLE=ESTs BM385344 1390963_at AA997034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997034 /DB_XREF=gi:4280797 /DB_XREF=UI-R-C0-hk-b-01-0-UI.s1 /CLONE=UI-R-C0-hk-b-01-0-UI /FEA=EST /CNT=4 /TID=Rn.23510.1 /TIER=ConsEnd /STK=3 /UG=Rn.23510 /UG_TITLE=ESTs, Highly similar to T14280 RW1 protein - mouse (M.musculus) AA997034 Transmembrane protein 131 Tmem131 316335 XM_001056771 /// XM_237056 1390964_at BE095730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095730 /DB_XREF=gi:8486661 /DB_XREF=UI-R-BU0-aoy-f-11-0-UI.s1 /CLONE=UI-R-BU0-aoy-f-11-0-UI /FEA=EST /CNT=4 /TID=Rn.48956.1 /TIER=ConsEnd /STK=3 /UG=Rn.48956 /UG_TITLE=ESTs BE095730 Similar to Gene model 1568 RGD1561115 500686 XM_001053824 /// XM_576068 1390965_at AW142969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142969 /DB_XREF=gi:6162868 /DB_XREF=EST293261 /CLONE=RGIBA68 /FEA=EST /CNT=4 /TID=Rn.29057.1 /TIER=ConsEnd /STK=3 /UG=Rn.29057 /UG_TITLE=ESTs AW142969 1390966_at BE111759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111759 /DB_XREF=gi:8503864 /DB_XREF=UI-R-BJ1-avx-e-04-0-UI.s1 /CLONE=UI-R-BJ1-avx-e-04-0-UI /FEA=EST /CNT=4 /TID=Rn.34830.1 /TIER=ConsEnd /STK=3 /UG=Rn.34830 /UG_TITLE=ESTs BE111759 1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta) Agpat6 290843 NM_001047849 0002071 // glandular epithelial cell maturation // not recorded /// 0002071 // glandular epithelial cell maturation // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // not recorded /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006637 // acyl-CoA metabolic process // not recorded /// 0006637 // acyl-CoA metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // not recorded /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006656 // phosphatidylcholine biosynthetic process // not recorded /// 0006656 // phosphatidylcholine biosynthetic process // inferred from electronic annotation /// 0007595 // lactation // not recorded /// 0007595 // lactation // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0019432 // triglyceride biosynthetic process // not recorded /// 0019432 // triglyceride biosynthetic process // inferred from electronic annotation /// 0030879 // mammary gland development // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0046339 // diacylglycerol metabolic process // not recorded /// 0046339 // diacylglycerol metabolic process // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // not recorded /// 0004366 // glycerol-3-phosphate O-acyltransferase activity // not recorded /// 0004366 // glycerol-3-phosphate O-acyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1390967_a_at AW919980 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919980 /DB_XREF=gi:8085785 /DB_XREF=EST351284 /CLONE=RGIGP27 /FEA=EST /CNT=2 /TID=Rn.18123.2 /TIER=ConsEnd /STK=0 /UG=Rn.18123 /UG_TITLE=ESTs, Weakly similar to F10B5.8.p (Caenorhabditis elegans) (C.elegans) AW919980 cleavage and polyadenylation specific factor 3-like Cpsf3l 298688 NM_001033892 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation 1390968_at AI706441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI706441 /DB_XREF=gi:4994341 /DB_XREF=UI-R-AA1-zx-c-06-0-UI.s1 /CLONE=UI-R-AA1-zx-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.41247.1 /TIER=ConsEnd /STK=3 /UG=Rn.41247 /UG_TITLE=ESTs AI706441 Similar to hypothetical protein A430031N04 RGD1559643 498100 NM_001109056 1390969_at BE109651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109651 /DB_XREF=gi:8501756 /DB_XREF=UI-R-BJ1-avq-f-01-0-UI.s1 /CLONE=UI-R-BJ1-avq-f-01-0-UI /FEA=EST /CNT=4 /TID=Rn.9164.1 /TIER=ConsEnd /STK=3 /UG=Rn.9164 /UG_TITLE=ESTs BE109651 1390970_at BF413658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413658 /DB_XREF=gi:11401647 /DB_XREF=UI-R-CA0-boh-a-06-0-UI.s1 /CLONE=UI-R-CA0-boh-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.62751.1 /TIER=ConsEnd /STK=3 /UG=Rn.62751 /UG_TITLE=ESTs BF413658 1390971_at AI171284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171284 /DB_XREF=gi:3711324 /DB_XREF=EST217239 /CLONE=RMUBI54 /FEA=EST /CNT=4 /TID=Rn.16009.1 /TIER=ConsEnd /STK=3 /UG=Rn.16009 /UG_TITLE=ESTs AI171284 1390972_at BI281729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281729 /DB_XREF=gi:14931771 /DB_XREF=UI-R-CT0s-cav-g-08-0-UI.s1 /CLONE=UI-R-CT0s-cav-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.34276.1 /TIER=ConsEnd /STK=3 /UG=Rn.34276 /UG_TITLE=ESTs BI281729 Tp53rk binding protein Tprkb 297411 NM_001013926 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0019901 // protein kinase binding // not recorded 1390973_at BI294747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294747 /DB_XREF=gi:14957502 /DB_XREF=UI-R-DK0-ceb-f-05-0-UI.s1 /CLONE=UI-R-DK0-ceb-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.27669.1 /TIER=ConsEnd /STK=3 /UG=Rn.27669 /UG_TITLE=ESTs BI294747 tripartite motif-containing 45 Trim45 295323 NM_001106453 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390974_a_at BI285675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285675 /DB_XREF=gi:14939559 /DB_XREF=UI-R-CT0s-cas-b-11-0-UI.s1 /CLONE=UI-R-CT0s-cas-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.33615.1 /TIER=ConsEnd /STK=3 /UG=Rn.33615 /UG_TITLE=ESTs BI285675 1390975_at BE111775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111775 /DB_XREF=gi:8503880 /DB_XREF=UI-R-BJ1-avx-f-09-0-UI.s1 /CLONE=UI-R-BJ1-avx-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.18433.1 /TIER=ConsEnd /STK=3 /UG=Rn.18433 /UG_TITLE=ESTs BE111775 1390976_at AI385355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385355 /DB_XREF=gi:4198137 /DB_XREF=UI-R-C2-mu-d-07-0-UI.s2 /CLONE=UI-R-C2-mu-d-07-0-UI /FEA=EST /CNT=4 /TID=Rn.32045.1 /TIER=ConsEnd /STK=3 /UG=Rn.32045 /UG_TITLE=ESTs AI385355 Ly6/neurotoxin 1 Lynx1 300018 NM_001130546 0009405 // pathogenesis // inferred from electronic annotation /// 0010469 // regulation of receptor activity // not recorded 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // not recorded /// 0008200 // ion channel inhibitor activity // not recorded /// 0030550 // acetylcholine receptor inhibitor activity // not recorded 1390977_at AW527529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527529 /DB_XREF=gi:7169943 /DB_XREF=UI-R-BO1-ajv-c-12-0-UI.s1 /CLONE=UI-R-BO1-ajv-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.41533.1 /TIER=ConsEnd /STK=3 /UG=Rn.41533 /UG_TITLE=ESTs, Weakly similar to F11A10.5.p (Caenorhabditis elegans) (C.elegans) AW527529 suppression of tumorigenicity 7-like St7l 295344 NM_001007639 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1390978_at BF406177 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406177 /DB_XREF=gi:11394152 /DB_XREF=UI-R-CA1-bjf-m-11-0-UI.s1 /CLONE=UI-R-CA1-bjf-m-11-0-UI /FEA=EST /CNT=4 /TID=Rn.48887.1 /TIER=ConsEnd /STK=3 /UG=Rn.48887 /UG_TITLE=ESTs BF406177 1390979_at AI409884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409884 /DB_XREF=gi:4253388 /DB_XREF=EST238177 /CLONE=RPLDM81 /FEA=EST /CNT=4 /TID=Rn.38827.1 /TIER=ConsEnd /STK=3 /UG=Rn.38827 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) AI409884 mouse zinc finger protein 14-like LOC499124 499124 NM_001100991 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390980_at AW528250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528250 /DB_XREF=gi:7170664 /DB_XREF=UI-R-BT1-ajw-d-06-0-UI.s1 /CLONE=UI-R-BT1-ajw-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.45261.1 /TIER=ConsEnd /STK=3 /UG=Rn.45261 /UG_TITLE=ESTs AW528250 1390981_at AI028965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI028965 /DB_XREF=gi:4295287 /DB_XREF=UI-R-C0-io-g-07-0-UI.s1 /CLONE=UI-R-C0-io-g-07-0-UI /FEA=EST /CNT=4 /TID=Rn.18114.1 /TIER=ConsEnd /STK=3 /UG=Rn.18114 /UG_TITLE=ESTs AI028965 1390982_at BM389435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389435 /DB_XREF=gi:18189488 /DB_XREF=UI-R-CN1-cjn-b-13-0-UI.s1 /CLONE=UI-R-CN1-cjn-b-13-0-UI /FEA=EST /CNT=4 /TID=Rn.19317.1 /TIER=ConsEnd /STK=3 /UG=Rn.19317 /UG_TITLE=ESTs, Weakly similar to CAFB_HUMAN CHROMATIN ASSEMBLY FACTOR I P60 SUBUNIT (H.sapiens) BM389435 chromatin assembly factor 1, subunit B (p60) Chaf1b 288242 NM_001024741 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1390983_at AA956823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956823 /DB_XREF=gi:4239297 /DB_XREF=UI-R-E1-ft-c-04-0-UI.s1 /CLONE=UI-R-E1-ft-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.22382.1 /TIER=ConsEnd /STK=3 /UG=Rn.22382 /UG_TITLE=ESTs AA956823 1390984_at AI576736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576736 /DB_XREF=gi:4561112 /DB_XREF=UI-R-Y0-vl-b-01-0-UI.s1 /CLONE=UI-R-Y0-vl-b-01-0-UI /FEA=EST /CNT=4 /TID=Rn.44904.1 /TIER=ConsEnd /STK=3 /UG=Rn.44904 /UG_TITLE=ESTs AI576736 Similar to Gene model 996 RGD1560470 362083 XM_001077786 /// XM_342384 1390985_at AA956519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956519 /DB_XREF=gi:4238993 /DB_XREF=UI-R-E1-fk-h-12-0-UI.s1 /CLONE=UI-R-E1-fk-h-12-0-UI /FEA=EST /CNT=4 /TID=Rn.24958.1 /TIER=ConsEnd /STK=3 /UG=Rn.24958 /UG_TITLE=ESTs AA956519 1390986_at AW526072 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526072 /DB_XREF=gi:7168457 /DB_XREF=UI-R-BO1-aiy-h-08-0-UI.s1 /CLONE=UI-R-BO1-aiy-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.46076.1 /TIER=ConsEnd /STK=3 /UG=Rn.46076 /UG_TITLE=ESTs AW526072 1390987_at AI406858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406858 /DB_XREF=gi:4250362 /DB_XREF=EST235145 /CLONE=ROVDW60 /FEA=EST /CNT=4 /TID=Rn.41998.1 /TIER=ConsEnd /STK=3 /UG=Rn.41998 /UG_TITLE=ESTs AI406858 1390988_at AW141270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141270 /DB_XREF=gi:6161055 /DB_XREF=EST291311 /CLONE=RGIBJ89 /FEA=EST /CNT=4 /TID=Rn.12858.1 /TIER=ConsEnd /STK=3 /UG=Rn.12858 /UG_TITLE=ESTs, Weakly similar to H2A1 RAT HISTONE H2A.1 (R.norvegicus) AW141270 histone variant H2al2-like LOC100365770 100365770 XM_002727530 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1390989_at BG667374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667374 /DB_XREF=gi:13889296 /DB_XREF=DRABVF11 /CLONE=DRABVF11 /FEA=EST /CNT=4 /TID=Rn.15602.1 /TIER=ConsEnd /STK=3 /UG=Rn.15602 /UG_TITLE=ESTs BG667374 motile sperm domain containing 2 Mospd2 363463 NM_001134588 0005198 // structural molecule activity // inferred from electronic annotation 1390990_at AI409862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409862 /DB_XREF=gi:4253366 /DB_XREF=EST238155 /CLONE=RPLDM36 /FEA=EST /CNT=4 /TID=Rn.39034.1 /TIER=ConsEnd /STK=3 /UG=Rn.39034 /UG_TITLE=ESTs AI409862 1390991_at BE113606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113606 /DB_XREF=gi:8505711 /DB_XREF=UI-R-BJ1-awg-c-05-0-UI.s1 /CLONE=UI-R-BJ1-awg-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.27450.1 /TIER=ConsEnd /STK=3 /UG=Rn.27450 /UG_TITLE=ESTs, Moderately similar to HBA RAT HEMOGLOBIN ALPHA-1 AND ALPHA-2 CHAINS (R.norvegicus) BE113606 hemoglobin, theta 1 /// mCG1039741-like Hbq1 /// LOC100361053 100361053 /// 303007 XM_001061675 /// XM_002724666 /// XM_002727758 /// XM_347266 0006810 // transport // inferred from electronic annotation /// 0015671 // oxygen transport // inferred from electronic annotation 0005833 // hemoglobin complex // inferred from electronic annotation 0005344 // oxygen transporter activity // inferred from electronic annotation /// 0019825 // oxygen binding // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390992_at BI297479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297479 /DB_XREF=gi:14962893 /DB_XREF=UI-R-CV2-chc-g-05-0-UI.s1 /CLONE=UI-R-CV2-chc-g-05-0-UI /FEA=EST /CNT=4 /TID=Rn.79912.1 /TIER=ConsEnd /STK=3 /UG=Rn.79912 /UG_TITLE=ESTs BI297479 1390993_at AW532101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532101 /DB_XREF=gi:7174515 /DB_XREF=UI-R-C4-ali-c-07-0-UI.s1 /CLONE=UI-R-C4-ali-c-07-0-UI /FEA=EST /CNT=4 /TID=Rn.41267.1 /TIER=ConsEnd /STK=3 /UG=Rn.41267 /UG_TITLE=ESTs AW532101 phenazine biosynthesis-like protein domain containing Pbld 171564 NM_138530 0009058 // biosynthetic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1390994_at BE097290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097290 /DB_XREF=gi:8488221 /DB_XREF=UI-R-BO1-apv-f-02-0-UI.s1 /CLONE=UI-R-BO1-apv-f-02-0-UI /FEA=EST /CNT=4 /TID=Rn.49186.1 /TIER=ConsEnd /STK=3 /UG=Rn.49186 /UG_TITLE=ESTs BE097290 1390995_at BF389385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389385 /DB_XREF=gi:11374215 /DB_XREF=UI-R-BS2-bdj-b-12-0-UI.s1 /CLONE=UI-R-BS2-bdj-b-12-0-UI /FEA=EST /CNT=4 /TID=Rn.54367.1 /TIER=ConsEnd /STK=3 /UG=Rn.54367 /UG_TITLE=ESTs, Weakly similar to small glutamine-rich tetratricopeptide repeat (TPR) containing protein (SGT) (Rattus norvegicus) (R.norvegicus) BF389385 FK506 binding protein-like Fkbpl 406168 NM_001002818 0006457 // protein folding // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1390996_at BE101679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101679 /DB_XREF=gi:8493777 /DB_XREF=UI-R-BT1-aqg-h-11-0-UI.s1 /CLONE=UI-R-BT1-aqg-h-11-0-UI /FEA=EST /CNT=4 /TID=Rn.6385.1 /TIER=ConsEnd /STK=3 /UG=Rn.6385 /UG_TITLE=ESTs BE101679 zinc finger, FYVE domain containing 20 Zfyve20 312562 NM_001107875 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1390997_at BI303253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303253 /DB_XREF=gi:14979533 /DB_XREF=UI-R-DQ0-ciz-h-05-0-UI.s1 /CLONE=UI-R-DQ0-ciz-h-05-0-UI /FEA=EST /CNT=4 /TID=Rn.29827.1 /TIER=ConsEnd /STK=3 /UG=Rn.29827 /UG_TITLE=ESTs BI303253 Alpha-L-iduronidase Idua 360904 NM_001172084 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation 1390998_at BI295528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295528 /DB_XREF=gi:14959056 /DB_XREF=UI-R-DK0-cev-d-06-0-UI.s1 /CLONE=UI-R-DK0-cev-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.13200.1 /TIER=ConsEnd /STK=3 /UG=Rn.13200 /UG_TITLE=ESTs BI295528 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1390999_at BE108409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108409 /DB_XREF=gi:8500514 /DB_XREF=UI-R-BS1-ayv-h-10-0-UI.s1 /CLONE=UI-R-BS1-ayv-h-10-0-UI /FEA=EST /CNT=4 /TID=Rn.38287.1 /TIER=ConsEnd /STK=3 /UG=Rn.38287 /UG_TITLE=ESTs BE108409 1391000_at AA852050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA852050 /DB_XREF=gi:2939590 /DB_XREF=EST194819 /CLONE=RSPAP90 /FEA=EST /CNT=4 /TID=Rn.32364.1 /TIER=ConsEnd /STK=3 /UG=Rn.32364 /UG_TITLE=ESTs AA852050 1391001_at BE112519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112519 /DB_XREF=gi:8504624 /DB_XREF=UI-R-BJ1-avi-f-06-0-UI.s1 /CLONE=UI-R-BJ1-avi-f-06-0-UI /FEA=EST /CNT=4 /TID=Rn.25082.2 /TIER=ConsEnd /STK=3 /UG=Rn.25082 /UG_TITLE=ESTs BE112519 1391002_at AA801280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA801280 /DB_XREF=gi:2864235 /DB_XREF=EST190777 /CLONE=RPLAB65 /FEA=EST /CNT=4 /TID=Rn.1842.1 /TIER=ConsEnd /STK=3 /UG=Rn.1842 /UG_TITLE=ESTs AA801280 1391003_at BE117528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117528 /DB_XREF=gi:8509633 /DB_XREF=UI-R-BS1-ayo-h-06-0-UI.s1 /CLONE=UI-R-BS1-ayo-h-06-0-UI /FEA=EST /CNT=4 /TID=Rn.15692.1 /TIER=ConsEnd /STK=3 /UG=Rn.15692 /UG_TITLE=ESTs BE117528 family with sequence similarity 178, member A Fam178a 499360 NM_001134612 1391004_at AW535541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535541 /DB_XREF=gi:7177955 /DB_XREF=UI-R-C4-alx-f-07-0-UI.s1 /CLONE=UI-R-C4-alx-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.36337.2 /TIER=ConsEnd /STK=3 /UG=Rn.36337 /UG_TITLE=ESTs, Weakly similar to VIL1 MOUSE VILLIN (M.musculus) AW535541 Supervillin Svil 361256 NM_001108416 0007519 // skeletal muscle tissue development // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0043034 // costamere // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1391005_at AA997732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997732 /DB_XREF=gi:4281014 /DB_XREF=UI-R-C0-hn-a-08-0-UI.s1 /CLONE=UI-R-C0-hn-a-08-0-UI /FEA=EST /CNT=4 /TID=Rn.12566.1 /TIER=ConsEnd /STK=3 /UG=Rn.12566 /UG_TITLE=ESTs AA997732 F-box and leucine-rich repeat protein 4 Fbxl4 313101 NM_001107919 1391006_at AI235353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235353 /DB_XREF=gi:4136084 /DB_XREF=EST231915 /CLONE=ROVCQ78 /FEA=EST /CNT=4 /TID=Rn.34222.1 /TIER=ConsEnd /STK=3 /UG=Rn.34222 /UG_TITLE=ESTs AI235353 1391007_s_at BE113377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113377 /DB_XREF=gi:8505482 /DB_XREF=UI-R-BJ1-awe-f-08-0-UI.s1 /CLONE=UI-R-BJ1-awe-f-08-0-UI /FEA=EST /CNT=4 /TID=Rn.64567.1 /TIER=ConsEnd /STK=3 /UG=Rn.64567 /UG_TITLE=ESTs BE113377 potassium inwardly rectifying channel, subfamily J, member 11 Kcnj11 83535 NM_031358 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from direct assay /// 0006813 // potassium ion transport // inferred from mutant phenotype /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0010107 // potassium ion import // inferred from electronic annotation /// 0010107 // potassium ion import // not recorded /// 0033198 // response to ATP // inferred from electronic annotation /// 0033198 // response to ATP // not recorded /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0034765 // regulation of ion transmembrane transport // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0046676 // negative regulation of insulin secretion // inferred from electronic annotation /// 0046676 // negative regulation of insulin secretion // not recorded /// 0050796 // regulation of insulin secretion // not recorded /// 0050796 // regulation of insulin secretion // inferred from electronic annotation /// 0050877 // neurological system process // inferred from electronic annotation /// 0050877 // neurological system process // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008282 // ATP-sensitive potassium channel complex // inferred from direct assay /// 0008282 // ATP-sensitive potassium channel complex // not recorded /// 0008282 // ATP-sensitive potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030315 // T-tubule // inferred from direct assay /// 0042383 // sarcolemma // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0015272 // ATP-activated inward rectifier potassium channel activity // inferred from direct assay /// 0015272 // ATP-activated inward rectifier potassium channel activity // inferred from mutant phenotype /// 0015272 // ATP-activated inward rectifier potassium channel activity // not recorded /// 0015272 // ATP-activated inward rectifier potassium channel activity // inferred from electronic annotation 1391008_at AI578428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578428 /DB_XREF=gi:4562804 /DB_XREF=UI-R-Y0-uz-c-05-0-UI.s3 /CLONE=UI-R-Y0-uz-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.38931.1 /TIER=ConsEnd /STK=3 /UG=Rn.38931 /UG_TITLE=ESTs AI578428 1391009_a_at AA851338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851338 /DB_XREF=gi:2938878 /DB_XREF=EST194106 /CLONE=RPLAF42 /FEA=EST /CNT=1 /TID=Rn.18922.2 /TIER=ConsEnd /STK=1 /UG=Rn.18922 /UG_TITLE=ESTs AA851338 1391010_at AI059953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059953 /DB_XREF=gi:3333730 /DB_XREF=UI-R-C1-la-b-02-0-UI.s1 /CLONE=UI-R-C1-la-b-02-0-UI /FEA=EST /CNT=4 /TID=Rn.13011.1 /TIER=ConsEnd /STK=3 /UG=Rn.13011 /UG_TITLE=ESTs AI059953 dihydropyrimidinase-like 3 Dpysl3 25418 NM_012934 0007399 // nervous system development // not recorded /// 0010976 // positive regulation of neuron projection development // inferred from direct assay /// 0048666 // neuron development // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030426 // growth cone // inferred from direct assay /// 0030426 // growth cone // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0070382 // exocytic vesicle // inferred from direct assay 0016787 // hydrolase activity // inferred from electronic annotation /// 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from direct assay /// 0035374 // chondroitin sulfate binding // inferred from direct assay 1391011_at AW527691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527691 /DB_XREF=gi:7170105 /DB_XREF=UI-R-BT1-ajy-b-03-0-UI.s1 /CLONE=UI-R-BT1-ajy-b-03-0-UI /FEA=EST /CNT=4 /TID=Rn.39284.1 /TIER=ConsEnd /STK=3 /UG=Rn.39284 /UG_TITLE=ESTs AW527691 1391012_at BF283210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283210 /DB_XREF=gi:11214280 /DB_XREF=EST447801 /CLONE=RGIDY86 /FEA=EST /CNT=4 /TID=Rn.24714.1 /TIER=ConsEnd /STK=3 /UG=Rn.24714 /UG_TITLE=ESTs BF283210 family with sequence similarity 83, member F Fam83f 315145 NM_001130502 1391013_at AW523567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523567 /DB_XREF=gi:7165952 /DB_XREF=UI-R-BO0-ahu-e-11-0-UI.s1 /CLONE=UI-R-BO0-ahu-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.45682.1 /TIER=ConsEnd /STK=3 /UG=Rn.45682 /UG_TITLE=ESTs AW523567 Protocadherin 8 Pcdh8 64865 NM_022868 0001756 // somitogenesis // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from direct assay /// 0007616 // long-term memory // traceable author statement /// 0016331 // morphogenesis of embryonic epithelium // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1391014_at AW530427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530427 /DB_XREF=gi:7172841 /DB_XREF=UI-R-BU0-amw-h-02-0-UI.s1 /CLONE=UI-R-BU0-amw-h-02-0-UI /FEA=EST /CNT=4 /TID=Rn.40409.1 /TIER=ConsEnd /STK=3 /UG=Rn.40409 /UG_TITLE=ESTs AW530427 zinc finger, MYND-type containing 19 Zmynd19 311791 NM_198770 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0019717 // synaptosome // not recorded 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391015_at AI548779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548779 /DB_XREF=gi:4466267 /DB_XREF=UI-R-C3-tr-e-09-0-UI.s1 /CLONE=UI-R-C3-tr-e-09-0-UI /FEA=EST /CNT=4 /TID=Rn.41775.1 /TIER=ConsEnd /STK=3 /UG=Rn.41775 /UG_TITLE=ESTs AI548779 coiled-coil domain containing 69 Ccdc69 497906 NM_001109031 1391016_at AI235914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235914 /DB_XREF=gi:3829420 /DB_XREF=EST232476 /CLONE=ROVCY56 /FEA=EST /CNT=4 /TID=Rn.19677.1 /TIER=ConsEnd /STK=3 /UG=Rn.19677 /UG_TITLE=ESTs AI235914 tryptophanyl tRNA synthetase 2 (mitochondrial) Wars2 690654 NM_001168641 0001570 // vasculogenesis // not recorded /// 0006436 // tryptophanyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004830 // tryptophan-tRNA ligase activity // inferred from electronic annotation /// 0004830 // tryptophan-tRNA ligase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1391017_at AI058490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058490 /DB_XREF=gi:3332267 /DB_XREF=UI-R-C1-kv-a-03-0-UI.s1 /CLONE=UI-R-C1-kv-a-03-0-UI /FEA=EST /CNT=4 /TID=Rn.19217.1 /TIER=ConsEnd /STK=3 /UG=Rn.19217 /UG_TITLE=ESTs AI058490 FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived) Farp1 306183 NM_001107287 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0019898 // extrinsic to membrane // inferred from electronic annotation 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 1391018_at BF420807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420807 /DB_XREF=gi:11408796 /DB_XREF=UI-R-BJ2-bqa-d-10-0-UI.s1 /CLONE=UI-R-BJ2-bqa-d-10-0-UI /FEA=EST /CNT=4 /TID=Rn.63889.1 /TIER=ConsEnd /STK=3 /UG=Rn.63889 /UG_TITLE=ESTs, Weakly similar to S55261 myosin heavy chain, dilute - mouse (M.musculus) BF420807 0016459 // myosin complex // inferred from electronic annotation 0003774 // motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1391019_at BF285698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285698 /DB_XREF=gi:11216768 /DB_XREF=EST450289 /CLONE=RGIFI39 /FEA=EST /CNT=4 /TID=Rn.31034.1 /TIER=ConsEnd /STK=3 /UG=Rn.31034 /UG_TITLE=ESTs BF285698 SLIT and NTRK-like family, member 1 Slitrk1 306147 NM_001107283 0007409 // axonogenesis // not recorded 0005515 // protein binding // inferred from electronic annotation 1391020_at BE104465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104465 /DB_XREF=gi:8496530 /DB_XREF=UI-R-BX0-aro-g-11-0-UI.s1 /CLONE=UI-R-BX0-aro-g-11-0-UI /FEA=EST /CNT=4 /TID=Rn.49646.1 /TIER=ConsEnd /STK=3 /UG=Rn.49646 /UG_TITLE=ESTs, Weakly similar to A53202 cyclophilin C-associated protein MAMACyCAP precursor - mouse (M.musculus) BE104465 BTB (POZ) domain containing 17 Btbd17 303660 NM_001134534 0005515 // protein binding // inferred from electronic annotation 1391021_at BF408587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408587 /DB_XREF=gi:11396562 /DB_XREF=UI-R-BJ2-brf-e-06-0-UI.s1 /CLONE=UI-R-BJ2-brf-e-06-0-UI /FEA=EST /CNT=4 /TID=Rn.19176.1 /TIER=ConsEnd /STK=3 /UG=Rn.19176 /UG_TITLE=ESTs BF408587 cingulin-like 1 Cgnl1 315795 NM_001108164 0015629 // actin cytoskeleton // not recorded /// 0016459 // myosin complex // inferred from electronic annotation /// 0043296 // apical junction complex // not recorded 0003774 // motor activity // inferred from electronic annotation 1391022_at BE101834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101834 /DB_XREF=gi:8493932 /DB_XREF=UI-R-BT1-aqh-h-08-0-UI.s1 /CLONE=UI-R-BT1-aqh-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.49634.1 /TIER=ConsEnd /STK=3 /UG=Rn.49634 /UG_TITLE=ESTs, Highly similar to LMB3 MOUSE LAMININ BETA-3 CHAIN PRECURSOR (M.musculus) BE101834 laminin, beta 3 Lamb3 305078 NM_001100841 0031581 // hemidesmosome assembly // not recorded /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005610 // laminin-5 complex // inferred from electronic annotation /// 0005610 // laminin-5 complex // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay 1391023_at AI548713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548713 /DB_XREF=gi:4466201 /DB_XREF=UI-R-C3-tw-e-01-0-UI.s1 /CLONE=UI-R-C3-tw-e-01-0-UI /FEA=EST /CNT=4 /TID=Rn.29772.1 /TIER=ConsEnd /STK=3 /UG=Rn.29772 /UG_TITLE=ESTs AI548713 1391024_at AA944450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944450 /DB_XREF=gi:3104366 /DB_XREF=EST199949 /CLONE=REMAJ38 /FEA=EST /CNT=4 /TID=Rn.7732.1 /TIER=ConsEnd /STK=3 /UG=Rn.7732 /UG_TITLE=ESTs AA944450 carboxypeptidase A4 Cpa4 502736 NM_001109346 0006508 // proteolysis // inferred from electronic annotation 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1391025_at BI291162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291162 /DB_XREF=gi:14950444 /DB_XREF=UI-R-DK0-cgh-c-11-0-UI.s1 /CLONE=UI-R-DK0-cgh-c-11-0-UI /FEA=EST /CNT=4 /TID=Rn.47994.1 /TIER=ConsEnd /STK=3 /UG=Rn.47994 /UG_TITLE=ESTs BI291162 1391026_at BI296897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296897 /DB_XREF=gi:14961779 /DB_XREF=UI-R-DK0-cgg-h-01-0-UI.s1 /CLONE=UI-R-DK0-cgg-h-01-0-UI /FEA=EST /CNT=4 /TID=Rn.9531.1 /TIER=ConsEnd /STK=3 /UG=Rn.9531 /UG_TITLE=ESTs BI296897 1391027_at AI236184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236184 /DB_XREF=gi:3829690 /DB_XREF=EST232746 /CLONE=ROVDC43 /FEA=EST /CNT=4 /TID=Rn.29932.1 /TIER=ConsEnd /STK=3 /UG=Rn.29932 /UG_TITLE=ESTs AI236184 1391028_at AI511126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511126 /DB_XREF=gi:4416825 /DB_XREF=UI-R-BT0-po-h-10-0-UI.s1 /CLONE=UI-R-BT0-po-h-10-0-UI /FEA=EST /CNT=4 /TID=Rn.34629.1 /TIER=ConsEnd /STK=3 /UG=Rn.34629 /UG_TITLE=ESTs AI511126 0006508 // proteolysis // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation 1391029_at BF285477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285477 /DB_XREF=gi:11216457 /DB_XREF=EST449978 /CLONE=RGIFF24 /FEA=EST /CNT=4 /TID=Rn.7487.1 /TIER=ConsEnd /STK=3 /UG=Rn.7487 /UG_TITLE=ESTs BF285477 1391030_at AW524694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524694 /DB_XREF=gi:7167079 /DB_XREF=UI-R-BO0-aib-c-10-0-UI.s1 /CLONE=UI-R-BO0-aib-c-10-0-UI /FEA=EST /CNT=4 /TID=Rn.46007.1 /TIER=ConsEnd /STK=3 /UG=Rn.46007 /UG_TITLE=ESTs AW524694 similar to KIAA0833 protein Camta1 362665 NM_001195559 /// NM_001195560 /// XM_002726619 /// XM_002729575 0005634 // nucleus // inferred from electronic annotation 0005516 // calmodulin binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1391031_at BF389889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389889 /DB_XREF=gi:11374727 /DB_XREF=UI-R-BS2-bdp-h-04-0-UI.s1 /CLONE=UI-R-BS2-bdp-h-04-0-UI /FEA=EST /CNT=4 /TID=Rn.21419.1 /TIER=ConsEnd /STK=3 /UG=Rn.21419 /UG_TITLE=ESTs BF389889 1391032_at AI112194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112194 /DB_XREF=gi:3512143 /DB_XREF=UI-R-Y0-ml-g-05-0-UI.s1 /CLONE=UI-R-Y0-ml-g-05-0-UI /FEA=EST /CNT=4 /TID=Rn.20647.1 /TIER=ConsEnd /STK=3 /UG=Rn.20647 /UG_TITLE=ESTs AI112194 seizure related 6 homolog (mouse) Sez6 192247 NM_001105754 /// XM_001080832 /// XM_239260 1391033_s_at AI412659 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412659 /DB_XREF=gi:4256163 /DB_XREF=EST240958 /CLONE=RBRDK62 /FEA=EST /CNT=4 /TID=Rn.43127.1 /TIER=ConsEnd /STK=3 /UG=Rn.43127 /UG_TITLE=ESTs, Highly similar to JC5701 ErbB kinase activator alpha1, brain and thymus - rat (R.norvegicus) AI412659 neuregulin 2 Nrg2 432361 NM_001136151 0007173 // epidermal growth factor receptor signaling pathway // inferred from direct assay /// 0009790 // embryo development // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005006 // epidermal growth factor receptor activity // inferred from direct assay /// 0005102 // receptor binding // inferred from electronic annotation /// 0005154 // epidermal growth factor receptor binding // inferred from direct assay /// 0008083 // growth factor activity // inferred from electronic annotation /// 0043125 // ErbB-3 class receptor binding // inferred from direct assay 1391034_at BE110994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110994 /DB_XREF=gi:8503099 /DB_XREF=UI-R-BJ1-auu-d-06-0-UI.s1 /CLONE=UI-R-BJ1-auu-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.23506.1 /TIER=ConsEnd /STK=3 /UG=Rn.23506 /UG_TITLE=ESTs BE110994 1391035_at BE096618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096618 /DB_XREF=gi:8487596 /DB_XREF=UI-R-BU0-api-h-05-0-UI.s1 /CLONE=UI-R-BU0-api-h-05-0-UI /FEA=EST /CNT=4 /TID=Rn.44908.1 /TIER=ConsEnd /STK=3 /UG=Rn.44908 /UG_TITLE=ESTs BE096618 1391036_at BG376106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376106 /DB_XREF=gi:13300578 /DB_XREF=UI-R-CT0-bum-f-02-0-UI.s1 /CLONE=UI-R-CT0-bum-f-02-0-UI /FEA=EST /CNT=4 /TID=Rn.26766.1 /TIER=ConsEnd /STK=3 /UG=Rn.26766 /UG_TITLE=ESTs BG376106 IQ motif and Sec7 domain 3 Iqsec3 404781 NM_207617 0032012 // regulation of ARF protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005086 // ARF guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1391037_at BF412161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412161 /DB_XREF=gi:11400150 /DB_XREF=UI-R-BT1-bmu-e-11-0-UI.s1 /CLONE=UI-R-BT1-bmu-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.15805.1 /TIER=ConsEnd /STK=3 /UG=Rn.15805 /UG_TITLE=ESTs BF412161 von Willebrand factor A domain containing 5B2 Vwa5b2 303812 NM_001134535 0005515 // protein binding // not recorded 1391038_at BE098696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098696 /DB_XREF=gi:8490562 /DB_XREF=UI-R-BJ1-atb-h-03-0-UI.s1 /CLONE=UI-R-BJ1-atb-h-03-0-UI /FEA=EST /CNT=4 /TID=Rn.49815.1 /TIER=ConsEnd /STK=3 /UG=Rn.49815 /UG_TITLE=ESTs, Weakly similar to GROWTHDIFFERENTIATION FACTOR 5 PRECURSOR (M.musculus) BE098696 growth differentiation factor 6 Gdf6 252834 NM_001013038 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030509 // BMP signaling pathway // not recorded /// 0032924 // activin receptor signaling pathway // inferred from electronic annotation /// 0032924 // activin receptor signaling pathway // not recorded /// 0040007 // growth // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0060389 // pathway-restricted SMAD protein phosphorylation // not recorded /// 0060389 // pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // non-traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1391039_at BE115243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115243 /DB_XREF=gi:8507348 /DB_XREF=UI-R-CA0-axr-a-04-0-UI.s1 /CLONE=UI-R-CA0-axr-a-04-0-UI /FEA=EST /CNT=4 /TID=Rn.35124.1 /TIER=ConsEnd /STK=3 /UG=Rn.35124 /UG_TITLE=ESTs BE115243 1391040_at AA997052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997052 /DB_XREF=gi:4280815 /DB_XREF=UI-R-C0-hk-c-07-0-UI.s1 /CLONE=UI-R-C0-hk-c-07-0-UI /FEA=EST /CNT=4 /TID=Rn.12500.1 /TIER=ConsEnd /STK=3 /UG=Rn.12500 /UG_TITLE=ESTs, Highly similar to RBB8_HUMAN RETINOBLASTOMA-BINDING PROTEIN 8 (CTBP INTERACTING PROTEIN) (CTIP) (RETINOBLASTOMA-INTERACTING PROTEIN AND MYOSIN-LIKE) (RIM) (H.sapiens) AA997052 retinoblastoma binding protein 8 Rbbp8 291787 NM_001134417 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0001835 // blastocyst hatching // inferred from electronic annotation /// 0001835 // blastocyst hatching // not recorded /// 0010792 // DNA double-strand break processing involved in repair via single-strand annealing // not recorded 0000014 // single-stranded DNA specific endodeoxyribonuclease activity // not recorded /// 0003684 // damaged DNA binding // not recorded /// 0005515 // protein binding // not recorded 1391041_at AI170690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170690 /DB_XREF=gi:3710730 /DB_XREF=EST216626 /CLONE=RMUBA05 /FEA=EST /CNT=4 /TID=Rn.18131.1 /TIER=ConsEnd /STK=3 /UG=Rn.18131 /UG_TITLE=ESTs AI170690 von Willebrand factor A domain containing 3B Vwa3b 501126 XM_001055017 /// XM_001057173 1391042_at BE107750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107750 /DB_XREF=gi:8499855 /DB_XREF=UI-R-CA0-aww-e-02-0-UI.s1 /CLONE=UI-R-CA0-aww-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.43427.1 /TIER=ConsEnd /STK=3 /UG=Rn.43427 /UG_TITLE=ESTs, Highly similar to MTF2_HUMAN METAL-RESPONSE ELEMENT-BINDING TRANSCRIPTION FACTOR 2 (METAL-RESPONSE ELEMENT DNA-BINDING PROTEIN M96) (H.sapiens) BE107750 metal response element binding transcription factor 2 Mtf2 360905 NM_001100898 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391043_at BE101732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101732 /DB_XREF=gi:8493830 /DB_XREF=UI-R-BO1-aps-f-07-0-UI.s1 /CLONE=UI-R-BO1-aps-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.49438.1 /TIER=ConsEnd /STK=3 /UG=Rn.49438 /UG_TITLE=ESTs, Weakly similar to T34535 hypothetical protein DKFZp434H0717.1 (H.sapiens) BE101732 OTU domain containing 7A Otud7a 309252 XM_001058176 /// XM_219703 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1391044_s_at BM390051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390051 /DB_XREF=gi:18190104 /DB_XREF=UI-R-CN1-cjo-h-01-0-UI.s1 /CLONE=UI-R-CN1-cjo-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.82370.1 /TIER=ConsEnd /STK=1 /UG=Rn.82370 /UG_TITLE=ESTs BM390051 Lck interacting transmembrane adaptor 1 Lime1 362289 NM_001108614 0016021 // integral to membrane // inferred from electronic annotation 1391045_at BI277463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277463 /DB_XREF=gi:14923368 /DB_XREF=UI-R-CY0-bxq-d-09-0-UI.s1 /CLONE=UI-R-CY0-bxq-d-09-0-UI /FEA=EST /CNT=4 /TID=Rn.23436.1 /TIER=ConsEnd /STK=3 /UG=Rn.23436 /UG_TITLE=ESTs, Weakly similar to T15251 hypothetical protein K07B1.4 - Caenorhabditis elegans (C.elegans) BI277463 diacylglycerol O-acyltransferase homolog 2 (mouse) Dgat2 252900 NM_001012345 0006071 // glycerol metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0019432 // triglyceride biosynthetic process // inferred from electronic annotation /// 0019432 // triglyceride biosynthetic process // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0003846 // 2-acylglycerol O-acyltransferase activity // inferred from electronic annotation /// 0003846 // 2-acylglycerol O-acyltransferase activity // not recorded /// 0004144 // diacylglycerol O-acyltransferase activity // inferred from direct assay /// 0004144 // diacylglycerol O-acyltransferase activity // not recorded /// 0004144 // diacylglycerol O-acyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation 1391046_at BM384217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384217 /DB_XREF=gi:18184270 /DB_XREF=UI-R-DZ0-cks-p-18-0-UI.s1 /CLONE=UI-R-DZ0-cks-p-18-0-UI /FEA=EST /CNT=4 /TID=Rn.28284.1 /TIER=ConsEnd /STK=3 /UG=Rn.28284 /UG_TITLE=ESTs BM384217 SET and MYND domain containing 3 Smyd3 498295 NM_001025762 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391047_at AI009553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009553 /DB_XREF=gi:4133061 /DB_XREF=EST204004 /CLONE=RLUBE44 /FEA=EST /CNT=4 /TID=Rn.30592.1 /TIER=ConsEnd /STK=3 /UG=Rn.30592 /UG_TITLE=ESTs AI009553 1391048_at BE101148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101148 /DB_XREF=gi:8493057 /DB_XREF=UI-R-BJ1-auh-f-06-0-UI.s1 /CLONE=UI-R-BJ1-auh-f-06-0-UI /FEA=EST /CNT=4 /TID=Rn.29157.1 /TIER=ConsEnd /STK=3 /UG=Rn.29157 /UG_TITLE=ESTs BE101148 Ras-related C3 botulinum toxin substrate 1 Rac1 363875 NM_134366 0006184 // GTP catabolic process // not recorded /// 0006897 // endocytosis // not recorded /// 0006915 // apoptosis // not recorded /// 0006928 // cellular component movement // inferred from mutant phenotype /// 0006935 // chemotaxis // inferred from mutant phenotype /// 0006972 // hyperosmotic response // not recorded /// 0007010 // cytoskeleton organization // not recorded /// 0007155 // cell adhesion // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0007411 // axon guidance // not recorded /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0010592 // positive regulation of lamellipodium assembly // not recorded /// 0016358 // dendrite development // not recorded /// 0016477 // cell migration // not recorded /// 0016601 // Rac protein signal transduction // traceable author statement /// 0021799 // cerebral cortex radially oriented cell migration // not recorded /// 0021831 // embryonic olfactory bulb interneuron precursor migration // not recorded /// 0030032 // lamellipodium assembly // not recorded /// 0030036 // actin cytoskeleton organization // inferred from direct assay /// 0030334 // regulation of cell migration // not recorded /// 0030838 // positive regulation of actin filament polymerization // not recorded /// 0031529 // ruffle organization // not recorded /// 0034446 // substrate adhesion-dependent cell spreading // not recorded /// 0043552 // positive regulation of phosphoinositide 3-kinase activity // not recorded /// 0045453 // bone resorption // inferred from direct assay /// 0045740 // positive regulation of DNA replication // inferred from mutant phenotype /// 0051668 // localization within membrane // not recorded /// 0060071 // Wnt receptor signaling pathway, planar cell polarity pathway // not recorded /// 0060263 // regulation of respiratory burst // not recorded /// 0071542 // dopaminergic neuron differentiation // not recorded 0000139 // Golgi membrane // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0019897 // extrinsic to plasma membrane // not recorded /// 0030027 // lamellipodium // not recorded /// 0042470 // melanosome // inferred from electronic annotation /// 0042995 // cell projection // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0003924 // GTPase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0030742 // GTP-dependent protein binding // not recorded /// 0031996 // thioesterase binding // not recorded 1391049_at BI284391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284391 /DB_XREF=gi:14937024 /DB_XREF=UI-R-CX0s-cco-f-01-0-UI.s1 /CLONE=UI-R-CX0s-cco-f-01-0-UI /FEA=EST /CNT=4 /TID=Rn.23458.1 /TIER=ConsEnd /STK=3 /UG=Rn.23458 /UG_TITLE=ESTs, Weakly similar to CATQ_RAT CATHEPSIN Q PRECURSOR (R.norvegicus) BI284391 cathepsin M Ctsm 306720 NM_181378 0006508 // proteolysis // inferred from electronic annotation 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation 1391050_at BI294718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294718 /DB_XREF=gi:14957446 /DB_XREF=UI-R-DK0-ceb-c-07-0-UI.s1 /CLONE=UI-R-DK0-ceb-c-07-0-UI /FEA=EST /CNT=4 /TID=Rn.49072.1 /TIER=ConsEnd /STK=3 /UG=Rn.49072 /UG_TITLE=ESTs, Highly similar to MTF2_MOUSE METAL-RESPONSE ELEMENT-BINDING TRANSCRIPTION FACTOR 2 (ZINC-REGULATED FACTOR 1) (ZIRF1) (METAL-RESPONSE ELEMENT DNA-BINDING PROTEIN M96) (M.musculus) BI294718 metal response element binding transcription factor 2 Mtf2 360905 NM_001100898 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391051_at AA997873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997873 /DB_XREF=gi:4285926 /DB_XREF=UI-R-C0-hu-f-08-0-UI.s1 /CLONE=UI-R-C0-hu-f-08-0-UI /FEA=EST /CNT=4 /TID=Rn.12796.1 /TIER=ConsEnd /STK=3 /UG=Rn.12796 /UG_TITLE=ESTs AA997873 1391052_at BI289847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289847 /DB_XREF=gi:14947845 /DB_XREF=UI-R-DK0-cfp-a-01-0-UI.s1 /CLONE=UI-R-DK0-cfp-a-01-0-UI /FEA=EST /CNT=4 /TID=Rn.20463.1 /TIER=ConsEnd /STK=3 /UG=Rn.20463 /UG_TITLE=ESTs BI289847 DOM-3 homolog Z (C. elegans) Dom3z 361799 NM_212497 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1391053_at BF408638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408638 /DB_XREF=gi:11396613 /DB_XREF=UI-R-BJ2-brg-c-04-0-UI.s1 /CLONE=UI-R-BJ2-brg-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.42187.1 /TIER=ConsEnd /STK=3 /UG=Rn.42187 /UG_TITLE=ESTs, Weakly similar to T33894 hypothetical protein Y37E11B.5 - Caenorhabditis elegans (C.elegans) BF408638 dihydrouridine synthase 3-like (S. cerevisiae) Dus3l 301122 NM_001034923 0008033 // tRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0017150 // tRNA dihydrouridine synthase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1391054_at BF418927 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418927 /DB_XREF=gi:11406916 /DB_XREF=UI-R-BJ2-bqk-e-08-0-UI.s1 /CLONE=UI-R-BJ2-bqk-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.23139.1 /TIER=ConsEnd /STK=3 /UG=Rn.23139 /UG_TITLE=ESTs, Weakly similar to T31611 hypothetical protein Y50E8A.g - Caenorhabditis elegans (C.elegans) BF418927 RNA binding motif protein 15B Rbm15b 315988 XM_001074007 /// XM_236613 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1391055_at AA866467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866467 /DB_XREF=gi:4229994 /DB_XREF=UI-R-E0-br-f-10-0-UI.s1 /CLONE=UI-R-E0-br-f-10-0-UI /FEA=EST /CNT=4 /TID=Rn.34951.1 /TIER=ConsEnd /STK=3 /UG=Rn.34951 /UG_TITLE=ESTs, Weakly similar to sorting nexin 1 (Rattus norvegicus) (R.norvegicus) AA866467 Sorting nexin 5 Snx5 296199 NM_001106518 0007154 // cell communication // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1391056_at AA817695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817695 /DB_XREF=gi:4198225 /DB_XREF=UI-R-A0-aa-c-10-0-UI.s1 /CLONE=UI-R-A0-aa-c-10-0-UI /FEA=EST /CNT=4 /TID=Rn.16371.1 /TIER=ConsEnd /STK=3 /UG=Rn.16371 /UG_TITLE=ESTs, Highly similar to 2008147C protein RAKd (R.norvegicus) AA817695 1391057_at BE100195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100195 /DB_XREF=gi:8492083 /DB_XREF=UI-R-BJ1-ats-g-08-0-UI.s1 /CLONE=UI-R-BJ1-ats-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.38006.1 /TIER=ConsEnd /STK=3 /UG=Rn.38006 /UG_TITLE=ESTs, Weakly similar to DnaJ-like protein (Rattus norvegicus) (R.norvegicus) BE100195 DnaJ (Hsp40) homolog, subfamily C, member 30 Dnajc30 368190 NM_001109024 0006457 // protein folding // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1391058_at BE328934 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE328934 /DB_XREF=gi:9202710 /DB_XREF=hq32d07.x1 /CLONE=IMAGE:3121069 /FEA=EST /CNT=4 /TID=Rn.40896.1 /TIER=ConsEnd /STK=3 /UG=Rn.40896 /UG_TITLE=ESTs, Weakly similar to S19427 probable membrane protein YCR017c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BE328934 cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) Cwh43 305307 NM_001191677 /// XM_002724957 /// XM_223359 1391059_at AW530225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530225 /DB_XREF=gi:7172639 /DB_XREF=UI-R-BU0-amu-a-11-0-UI.s1 /CLONE=UI-R-BU0-amu-a-11-0-UI /FEA=EST /CNT=4 /TID=Rn.14575.1 /TIER=ConsEnd /STK=3 /UG=Rn.14575 /UG_TITLE=ESTs AW530225 neuropeptide W Npw 259224 NM_153294 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation /// 0007631 // feeding behavior // inferred from electronic annotation /// 0007631 // feeding behavior // not recorded 0005576 // extracellular region // inferred from electronic annotation 0001664 // G-protein-coupled receptor binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391060_at BG371670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371670 /DB_XREF=gi:13268207 /DB_XREF=UI-R-BJ2-bor-h-04-0-UI.s1 /CLONE=UI-R-BJ2-bor-h-04-0-UI /FEA=EST /CNT=4 /TID=Rn.35547.1 /TIER=ConsEnd /STK=3 /UG=Rn.35547 /UG_TITLE=ESTs BG371670 1391061_at BI293100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293100 /DB_XREF=gi:14954273 /DB_XREF=UI-R-DK0-cdp-e-09-0-UI.s1 /CLONE=UI-R-DK0-cdp-e-09-0-UI /FEA=EST /CNT=4 /TID=Rn.43865.1 /TIER=ConsEnd /STK=3 /UG=Rn.43865 /UG_TITLE=ESTs BI293100 1391062_at AA875129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875129 /DB_XREF=gi:4231010 /DB_XREF=UI-R-E0-bu-e-01-0-UI.s2 /CLONE=UI-R-E0-bu-e-01-0-UI /FEA=EST /CNT=4 /TID=Rn.2800.1 /TIER=ConsEnd /STK=3 /UG=Rn.2800 /UG_TITLE=ESTs AA875129 similar to elongation protein 4 homolog RGD1566052 687694 NM_001115047 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0033588 // Elongator holoenzyme complex // inferred from electronic annotation 1391063_at BE113443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113443 /DB_XREF=gi:8505548 /DB_XREF=UI-R-BJ1-awl-d-06-0-UI.s1 /CLONE=UI-R-BJ1-awl-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.28184.1 /TIER=ConsEnd /STK=3 /UG=Rn.28184 /UG_TITLE=ESTs, Weakly similar to S28262 kinesin-related protein MKLP-1 (H.sapiens) BE113443 kinesin family member 23 Kif23 315740 NM_001108155 0007018 // microtubule-based movement // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005819 // spindle // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0030496 // midbody // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1391064_at BI295177 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295177 /DB_XREF=gi:14958361 /DB_XREF=UI-R-DK0-ceg-f-10-0-UI.s1 /CLONE=UI-R-DK0-ceg-f-10-0-UI /FEA=EST /CNT=4 /TID=Rn.72528.1 /TIER=ConsEnd /STK=3 /UG=Rn.72528 /UG_TITLE=ESTs BI295177 ATG16 autophagy related 16-like 2 (S. cerevisiae) Atg16l2 308865 NM_001191560 /// XM_002725700 /// XM_002728797 1391065_at BG373309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373309 /DB_XREF=gi:13269846 /DB_XREF=UI-R-CV1-brx-c-02-0-UI.s1 /CLONE=UI-R-CV1-brx-c-02-0-UI /FEA=EST /CNT=4 /TID=Rn.46342.1 /TIER=ConsEnd /STK=3 /UG=Rn.46342 /UG_TITLE=ESTs BG373309 1391066_at AI502569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502569 /DB_XREF=gi:4400420 /DB_XREF=UI-R-C2-ni-d-11-0-UI.s1 /CLONE=UI-R-C2-ni-d-11-0-UI /FEA=EST /CNT=4 /TID=Rn.24456.1 /TIER=ConsEnd /STK=3 /UG=Rn.24456 /UG_TITLE=ESTs, Highly similar to AT motif-binding factor (M.musculus) AI502569 Zinc finger homeobox 3 Zfhx3 307829 XM_001076847 /// XM_002728613 /// XM_226464 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007050 // cell cycle arrest // inferred from expression pattern /// 0007420 // brain development // inferred from expression pattern /// 0045662 // negative regulation of myoblast differentiation // not recorded /// 0045663 // positive regulation of myoblast differentiation // not recorded /// 0045664 // regulation of neuron differentiation // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0019899 // enzyme binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1391067_at BF389648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389648 /DB_XREF=gi:11374483 /DB_XREF=UI-R-BS2-bdn-b-05-0-UI.s1 /CLONE=UI-R-BS2-bdn-b-05-0-UI /FEA=EST /CNT=4 /TID=Rn.21083.1 /TIER=ConsEnd /STK=3 /UG=Rn.21083 /UG_TITLE=ESTs BF389648 1391068_at AI136523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136523 /DB_XREF=gi:3637300 /DB_XREF=UI-R-C2p-nq-e-02-0-UI.s1 /CLONE=UI-R-C2p-nq-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.34802.1 /TIER=ConsEnd /STK=3 /UG=Rn.34802 /UG_TITLE=ESTs AI136523 E030032D13Rik gene E030032D13Rik 415052 NM_001166020 1391069_at AI231713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231713 /DB_XREF=gi:3815593 /DB_XREF=EST228401 /CLONE=REMDN88 /FEA=EST /CNT=4 /TID=Rn.24597.1 /TIER=ConsEnd /STK=3 /UG=Rn.24597 /UG_TITLE=ESTs, Weakly similar to T28925 hypothetical protein C48B6.3 - Caenorhabditis elegans (C.elegans) AI231713 Similar to CG4768-PA RGD1309748 302913 NM_001106972 1391070_at AW915526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915526 /DB_XREF=gi:8081224 /DB_XREF=EST346830 /CLONE=RGICW38 /FEA=EST /CNT=4 /TID=Rn.20869.1 /TIER=ConsEnd /STK=3 /UG=Rn.20869 /UG_TITLE=ESTs AW915526 similar to hypothetical MGC48595 RGD1566220 500692 XM_002726764 /// XM_576072 1391071_at AI556612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556612 /DB_XREF=gi:4488975 /DB_XREF=UI-R-C2p-ri-d-05-0-UI.s1 /CLONE=UI-R-C2p-ri-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.37831.1 /TIER=ConsEnd /STK=3 /UG=Rn.37831 /UG_TITLE=ESTs, Weakly similar to A43344 synaptic vesicle protein SV2 - rat (R.norvegicus) AI556612 1391072_at AI410068 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410068 /DB_XREF=gi:4253572 /DB_XREF=EST238361 /CLONE=RPLDH93 /FEA=EST /CNT=4 /TID=Rn.15229.1 /TIER=ConsEnd /STK=3 /UG=Rn.15229 /UG_TITLE=ESTs AI410068 Fc fragment of IgE, low affinity II, receptor for (CD23) Fcer2 171075 NM_001033924 /// NM_133550 0002925 // positive regulation of humoral immune response mediated by circulating immunoglobulin // not recorded /// 0002925 // positive regulation of humoral immune response mediated by circulating immunoglobulin // inferred from electronic annotation /// 0051000 // positive regulation of nitric-oxide synthase activity // not recorded /// 0051000 // positive regulation of nitric-oxide synthase activity // inferred from electronic annotation /// 0051712 // positive regulation of killing of cells of another organism // not recorded /// 0051712 // positive regulation of killing of cells of another organism // inferred from electronic annotation /// 0051773 // positive regulation of nitric-oxide synthase 2 biosynthetic process // not recorded /// 0051773 // positive regulation of nitric-oxide synthase 2 biosynthetic process // inferred from electronic annotation 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1391073_at AA964252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964252 /DB_XREF=gi:4279128 /DB_XREF=UI-R-E1-gl-d-07-0-UI.s1 /CLONE=UI-R-E1-gl-d-07-0-UI /FEA=EST /CNT=4 /TID=Rn.11753.1 /TIER=ConsEnd /STK=3 /UG=Rn.11753 /UG_TITLE=ESTs AA964252 1391074_at BF389793 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389793 /DB_XREF=gi:11374629 /DB_XREF=UI-R-BS2-bdo-g-09-0-UI.s1 /CLONE=UI-R-BS2-bdo-g-09-0-UI /FEA=EST /CNT=4 /TID=Rn.3207.1 /TIER=ConsEnd /STK=3 /UG=Rn.3207 /UG_TITLE=ESTs, Highly similar to RET3 BOVIN RETINOIC ACID-BINDING PROTEIN I, CELLULAR (R.norvegicus) BF389793 cellular retinoic acid binding protein 1 Crabp1 25061 NM_001105716 0006810 // transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0016918 // retinal binding // inferred from electronic annotation /// 0019841 // retinol binding // inferred from electronic annotation 1391075_at AI179271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179271 /DB_XREF=gi:4135138 /DB_XREF=EST222964 /CLONE=RSPCE54 /FEA=EST /CNT=4 /TID=Rn.23730.1 /TIER=ConsEnd /STK=3 /UG=Rn.23730 /UG_TITLE=ESTs, Weakly similar to G alpha interacting protein (Rattus norvegicus) (R.norvegicus) AI179271 regulator of G-protein signaling 17 Rgs17 308118 NM_001107459 0004871 // signal transducer activity // inferred from electronic annotation 1391076_at BE109369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109369 /DB_XREF=gi:8501474 /DB_XREF=UI-R-BJ1-aur-c-02-0-UI.s1 /CLONE=UI-R-BJ1-aur-c-02-0-UI /FEA=EST /CNT=4 /TID=Rn.23230.1 /TIER=ConsEnd /STK=3 /UG=Rn.23230 /UG_TITLE=ESTs, Highly similar to S69890 mitogen inducible gene mig-2 (H.sapiens) BE109369 Fermitin family homolog 2 (Drosophila) Fermt2 289992 NM_001011915 0001725 // stress fiber // inferred from electronic annotation /// 0001725 // stress fiber // not recorded /// 0005829 // cytosol // not recorded /// 0031941 // filamentous actin // inferred from electronic annotation /// 0031941 // filamentous actin // not recorded 0005488 // binding // inferred from electronic annotation 1391077_at AA851257 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851257 /DB_XREF=gi:2938797 /DB_XREF=EST194025 /CLONE=RPLAE48 /FEA=EST /CNT=5 /TID=Rn.6720.1 /TIER=ConsEnd /STK=3 /UG=Rn.6720 /UG_TITLE=ESTs AA851257 claspin homolog (Xenopus laevis) Clspn 298534 NM_001106687 0006260 // DNA replication // not recorded /// 0031572 // G2/M transition DNA damage checkpoint // not recorded 0005654 // nucleoplasm // not recorded 0005515 // protein binding // not recorded /// 0010997 // anaphase-promoting complex binding // not recorded 1391078_at BM391856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391856 /DB_XREF=gi:18191909 /DB_XREF=UI-R-DO1-cmk-j-02-0-UI.s1 /CLONE=UI-R-DO1-cmk-j-02-0-UI /FEA=EST /CNT=5 /TID=Rn.68547.1 /TIER=ConsEnd /STK=3 /UG=Rn.68547 /UG_TITLE=ESTs, Highly similar to AC15 MOUSE ACTIVATOR 1 140 KD SUBUNIT (M.musculus) BM391856 replication factor C (activator 1) 1 Rfc1 89809 NM_053547 0006260 // DNA replication // inferred from electronic annotation /// 0006297 // nucleotide-excision repair, DNA gap filling // not recorded /// 0016481 // negative regulation of transcription // inferred from mutant phenotype /// 0045941 // positive regulation of transcription // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005663 // DNA replication factor C complex // inferred from electronic annotation /// 0005663 // DNA replication factor C complex // not recorded /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003689 // DNA clamp loader activity // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // inferred from direct assay /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay 1391079_at BI295875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295875 /DB_XREF=gi:14959749 /DB_XREF=UI-R-DK0-cfb-f-07-0-UI.s1 /CLONE=UI-R-DK0-cfb-f-07-0-UI /FEA=EST /CNT=5 /TID=Rn.49180.1 /TIER=ConsEnd /STK=3 /UG=Rn.49180 /UG_TITLE=ESTs BI295875 1391080_at BM390317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390317 /DB_XREF=gi:18190370 /DB_XREF=UI-R-CN1-cjq-i-08-0-UI.s1 /CLONE=UI-R-CN1-cjq-i-08-0-UI /FEA=EST /CNT=4 /TID=Rn.18547.1 /TIER=ConsEnd /STK=3 /UG=Rn.18547 /UG_TITLE=ESTs BM390317 1391081_at AW526722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526722 /DB_XREF=gi:7169136 /DB_XREF=UI-R-BT1-ake-c-09-0-UI.s1 /CLONE=UI-R-BT1-ake-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.46298.1 /TIER=ConsEnd /STK=3 /UG=Rn.46298 /UG_TITLE=ESTs AW526722 1391082_at BE106201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106201 /DB_XREF=gi:8498303 /DB_XREF=UI-R-BO1-asl-b-10-0-UI.s1 /CLONE=UI-R-BO1-asl-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.46846.1 /TIER=ConsEnd /STK=3 /UG=Rn.46846 /UG_TITLE=ESTs BE106201 1391083_at BM384457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384457 /DB_XREF=gi:18184510 /DB_XREF=UI-R-CN1-cjn-o-14-0-UI.s1 /CLONE=UI-R-CN1-cjn-o-14-0-UI /FEA=EST /CNT=4 /TID=Rn.27999.1 /TIER=ConsEnd /STK=3 /UG=Rn.27999 /UG_TITLE=ESTs, Weakly similar to Y053_HUMAN HYPOTHETICAL PROTEIN KIAA0053 (H.sapiens) BM384457 Rho GTPase activating protein 22 Arhgap22 306279 NM_001107297 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation 1391084_at AW528763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528763 /DB_XREF=gi:7171177 /DB_XREF=UI-R-BT1-aki-b-03-0-UI.s1 /CLONE=UI-R-BT1-aki-b-03-0-UI /FEA=EST /CNT=4 /TID=Rn.46224.1 /TIER=ConsEnd /STK=3 /UG=Rn.46224 /UG_TITLE=ESTs AW528763 1391085_at BE118077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118077 /DB_XREF=gi:8510182 /DB_XREF=UI-R-BS1-azn-d-09-0-UI.s1 /CLONE=UI-R-BS1-azn-d-09-0-UI /FEA=EST /CNT=4 /TID=Rn.46659.1 /TIER=ConsEnd /STK=3 /UG=Rn.46659 /UG_TITLE=ESTs BE118077 1391086_at BI302698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302698 /DB_XREF=gi:14978978 /DB_XREF=UI-R-DO0-cix-l-10-0-UI.s1 /CLONE=UI-R-DO0-cix-l-10-0-UI /FEA=EST /CNT=4 /TID=Rn.47464.1 /TIER=ConsEnd /STK=3 /UG=Rn.47464 /UG_TITLE=ESTs, Weakly similar to TERA RAT TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (R.norvegicus) BI302698 katanin p60 (ATPase-containing) subunit A1 Katna1 292464 NM_001004217 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0006200 // ATP catabolic process // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // traceable author statement /// 0007067 // mitosis // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0008104 // protein localization // traceable author statement /// 0008104 // protein localization // inferred from electronic annotation /// 0010977 // negative regulation of neuron projection development // inferred from direct assay /// 0031122 // cytoplasmic microtubule organization // inferred from electronic annotation /// 0031122 // cytoplasmic microtubule organization // not recorded /// 0051013 // microtubule severing // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation /// 0051329 // interphase of mitotic cell cycle // inferred from electronic annotation /// 0051329 // interphase of mitotic cell cycle // not recorded 0000922 // spindle pole // inferred from electronic annotation /// 0000922 // spindle pole // not recorded /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005811 // lipid particle // inferred from electronic annotation /// 0005811 // lipid particle // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from electronic annotation /// 0030426 // growth cone // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0008568 // microtubule-severing ATPase activity // inferred from electronic annotation /// 0008568 // microtubule-severing ATPase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0016887 // ATPase activity // traceable author statement /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0045502 // dynein binding // inferred from electronic annotation /// 0045502 // dynein binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1391087_at AI236588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236588 /DB_XREF=gi:3830094 /DB_XREF=EST233150 /CLONE=ROVDI05 /FEA=EST /CNT=4 /TID=Rn.25376.1 /TIER=ConsEnd /STK=3 /UG=Rn.25376 /UG_TITLE=ESTs AI236588 leucine rich repeat containing 56 Lrrc56 365389 NM_001024902 0005515 // protein binding // inferred from electronic annotation 1391088_at BF414005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414005 /DB_XREF=gi:11401994 /DB_XREF=UI-R-BJ2-bol-c-11-0-UI.s1 /CLONE=UI-R-BJ2-bol-c-11-0-UI /FEA=EST /CNT=4 /TID=Rn.64452.1 /TIER=ConsEnd /STK=3 /UG=Rn.64452 /UG_TITLE=ESTs BF414005 cadherin 11 Cdh11 84407 NM_053392 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391089_at AW527270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527270 /DB_XREF=gi:7169684 /DB_XREF=UI-R-BO1-ajs-d-07-0-UI.s1 /CLONE=UI-R-BO1-ajs-d-07-0-UI /FEA=EST /CNT=4 /TID=Rn.32812.1 /TIER=ConsEnd /STK=3 /UG=Rn.32812 /UG_TITLE=ESTs AW527270 1391090_at BG380796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380796 /DB_XREF=gi:13305268 /DB_XREF=UI-R-CT0-bub-e-06-0-UI.s1 /CLONE=UI-R-CT0-bub-e-06-0-UI /FEA=EST /CNT=4 /TID=Rn.33072.1 /TIER=ConsEnd /STK=3 /UG=Rn.33072 /UG_TITLE=ESTs BG380796 1391091_at AI406286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406286 /DB_XREF=gi:4249790 /DB_XREF=EST234572 /CLONE=RBRDM08 /FEA=EST /CNT=4 /TID=Rn.44034.1 /TIER=ConsEnd /STK=3 /UG=Rn.44034 /UG_TITLE=ESTs, Weakly similar to S42834 F40F12.5 protein - Caenorhabditis elegans (C.elegans) AI406286 cylindromatosis (turban tumor syndrome) /// probable ubiquitin carboxyl-terminal hydrolase CYLD-like /// similar to cylindromatosis (turban tumor syndrome) Cyld /// LOC100360670 /// RGD1565647 100360670 /// 312937 /// 361373 NM_001017380 /// XM_002728590 /// XR_085832 /// XR_086249 0006412 // translation // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007346 // regulation of mitotic cell cycle // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // inferred from sequence or structural similarity /// 0042347 // negative regulation of NF-kappaB import into nucleus // not recorded /// 0042347 // negative regulation of NF-kappaB import into nucleus // inferred from sequence or structural similarity /// 0070507 // regulation of microtubule cytoskeleton organization // not recorded /// 0070536 // protein K63-linked deubiquitination // not recorded /// 0070536 // protein K63-linked deubiquitination // inferred from sequence or structural similarity /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005840 // ribosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // not recorded /// 0005881 // cytoplasmic microtubule // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030496 // midbody // not recorded /// 0030496 // midbody // inferred from sequence or structural similarity /// 0031234 // extrinsic to internal side of plasma membrane // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0004843 // ubiquitin-specific protease activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070064 // proline-rich region binding // not recorded 1391092_at AW522900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522900 /DB_XREF=gi:7165285 /DB_XREF=UI-R-BO0-ahp-a-09-0-UI.s1 /CLONE=UI-R-BO0-ahp-a-09-0-UI /FEA=EST /CNT=4 /TID=Rn.45214.1 /TIER=ConsEnd /STK=3 /UG=Rn.45214 /UG_TITLE=ESTs AW522900 1391093_at AI599579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599579 /DB_XREF=gi:4608627 /DB_XREF=EST251282 /CLONE=REMEP17 /FEA=EST /CNT=4 /TID=Rn.23494.1 /TIER=ConsEnd /STK=3 /UG=Rn.23494 /UG_TITLE=ESTs AI599579 zinc finger protein 410 Zfp410 314310 NM_001108042 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1391094_at BM387077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387077 /DB_XREF=gi:18187130 /DB_XREF=UI-R-CN1-cji-i-08-0-UI.s1 /CLONE=UI-R-CN1-cji-i-08-0-UI /FEA=EST /CNT=4 /TID=Rn.27105.1 /TIER=ConsEnd /STK=3 /UG=Rn.27105 /UG_TITLE=ESTs BM387077 1391095_at BI294977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294977 /DB_XREF=gi:14957960 /DB_XREF=UI-R-DK0-cee-d-01-0-UI.s1 /CLONE=UI-R-DK0-cee-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.48520.1 /TIER=ConsEnd /STK=3 /UG=Rn.48520 /UG_TITLE=ESTs, Moderately similar to MM19_MOUSE MATRIX METALLOPROTEINASE-19 PRECURSOR (MMP-19) (MATRIX METALLOPROTEINASE RASI) (M.musculus) BI294977 matrix metallopeptidase 19 Mmp19 304608 NM_001107159 0001541 // ovarian follicle development // inferred from expression pattern /// 0001542 // ovulation from ovarian follicle // inferred from expression pattern /// 0001554 // luteolysis // inferred from expression pattern /// 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391096_at AI764493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764493 /DB_XREF=gi:5210386 /DB_XREF=UI-R-Y0-abk-a-10-0-UI.s1 /CLONE=UI-R-Y0-abk-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.41213.1 /TIER=ConsEnd /STK=3 /UG=Rn.41213 /UG_TITLE=ESTs, Highly similar to HNF3FH TRANSCRIPTION FACTOR GENESIS (R.norvegicus) AI764493 forkhead box D3 Foxd3 29203 XM_001061117 /// XM_575873 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from sequence or structural similarity /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001829 // trophectodermal cell differentiation // inferred from electronic annotation /// 0001829 // trophectodermal cell differentiation // not recorded /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0001892 // embryonic placenta development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1391097_at BF418831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418831 /DB_XREF=gi:11406820 /DB_XREF=UI-R-BJ2-bqj-e-01-0-UI.s1 /CLONE=UI-R-BJ2-bqj-e-01-0-UI /FEA=EST /CNT=4 /TID=Rn.48638.1 /TIER=ConsEnd /STK=3 /UG=Rn.48638 /UG_TITLE=ESTs BF418831 1391098_x_at BE108925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108925 /DB_XREF=gi:8501030 /DB_XREF=UI-R-BS1-aza-a-03-0-UI.s1 /CLONE=UI-R-BS1-aza-a-03-0-UI /FEA=EST /CNT=4 /TID=Rn.13318.1 /TIER=ConsEnd /STK=3 /UG=Rn.13318 /UG_TITLE=ESTs BE108925 1391099_at BF404460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404460 /DB_XREF=gi:11392435 /DB_XREF=UI-R-CA1-bif-f-01-0-UI.s1 /CLONE=UI-R-CA1-bif-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.50797.1 /TIER=ConsEnd /STK=3 /UG=Rn.50797 /UG_TITLE=ESTs BF404460 1391100_at BF399564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399564 /DB_XREF=gi:11384572 /DB_XREF=UI-R-CA0-bhs-f-02-0-UI.s1 /CLONE=UI-R-CA0-bhs-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.59413.1 /TIER=ConsEnd /STK=3 /UG=Rn.59413 /UG_TITLE=ESTs BF399564 1391101_at AI407134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407134 /DB_XREF=gi:4250638 /DB_XREF=EST235422 /CLONE=ROVDT77 /FEA=EST /CNT=3 /TID=Rn.34541.1 /TIER=ConsEnd /STK=3 /UG=Rn.34541 /UG_TITLE=ESTs AI407134 Rho GTPase activating protein 12 Arhgap12 307016 NM_001107357 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1391102_at BI275672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275672 /DB_XREF=gi:14919815 /DB_XREF=UI-R-CW0-bwm-c-11-0-UI.s1 /CLONE=UI-R-CW0-bwm-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.46371.1 /TIER=ConsEnd /STK=3 /UG=Rn.46371 /UG_TITLE=ESTs BI275672 1391103_at BF409883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409883 /DB_XREF=gi:11397858 /DB_XREF=UI-R-CA1-bjr-h-09-0-UI.s1 /CLONE=UI-R-CA1-bjr-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.63038.1 /TIER=ConsEnd /STK=3 /UG=Rn.63038 /UG_TITLE=ESTs BF409883 1391104_at BF405024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405024 /DB_XREF=gi:11392999 /DB_XREF=UI-R-CA1-bio-f-06-0-UI.s1 /CLONE=UI-R-CA1-bio-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.58246.1 /TIER=ConsEnd /STK=3 /UG=Rn.58246 /UG_TITLE=ESTs BF405024 ATPase type 13A5 Atp13a5 303856 NM_001191657 /// XM_001054000 /// XM_221354 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation 1391105_at BF404968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404968 /DB_XREF=gi:11392943 /DB_XREF=UI-R-CA1-bij-h-02-0-UI.s1 /CLONE=UI-R-CA1-bij-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.50609.1 /TIER=ConsEnd /STK=3 /UG=Rn.50609 /UG_TITLE=ESTs BF404968 1391106_at BM385061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385061 /DB_XREF=gi:18185114 /DB_XREF=UI-R-CN1-cjm-h-03-0-UI.s9 /CLONE=UI-R-CN1-cjm-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.20457.1 /TIER=ConsEnd /STK=3 /UG=Rn.20457 /UG_TITLE=ESTs BM385061 1391107_at BI275784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275784 /DB_XREF=gi:14920039 /DB_XREF=UI-R-CX0-bxg-f-01-0-UI.s1 /CLONE=UI-R-CX0-bxg-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.13214.1 /TIER=ConsEnd /STK=3 /UG=Rn.13214 /UG_TITLE=ESTs, Moderately similar to T30174 exoribonuclease, variant 1 - mouse (M.musculus) BI275784 5'-3' exoribonuclease 1 Xrn1 300944 XM_001069029 /// XM_002727120 /// XM_002727121 /// XM_002729956 /// XM_002729957 /// XM_217233 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0071044 // histone mRNA catabolic process // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008409 // 5'-3' exonuclease activity // inferred from electronic annotation 1391108_at BI289413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289413 /DB_XREF=gi:14946958 /DB_XREF=UI-R-DK0-cfg-f-09-0-UI.s1 /CLONE=UI-R-DK0-cfg-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.41930.1 /TIER=ConsEnd /STK=3 /UG=Rn.41930 /UG_TITLE=ESTs BI289413 zinc finger protein 593 Znf593 298546 NM_001106689 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391109_x_at BE108349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108349 /DB_XREF=gi:8500454 /DB_XREF=UI-R-BS1-ayv-c-04-0-UI.s1 /CLONE=UI-R-BS1-ayv-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.32306.1 /TIER=ConsEnd /STK=3 /UG=Rn.32306 /UG_TITLE=ESTs BE108349 1391110_at BF393043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393043 /DB_XREF=gi:11377903 /DB_XREF=UI-R-CA0-bgp-d-04-0-UI.s1 /CLONE=UI-R-CA0-bgp-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.57968.1 /TIER=ConsEnd /STK=3 /UG=Rn.57968 /UG_TITLE=ESTs BF393043 1391111_at BE109670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109670 /DB_XREF=gi:8501775 /DB_XREF=UI-R-BJ1-avq-g-09-0-UI.s1 /CLONE=UI-R-BJ1-avq-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.16182.1 /TIER=ConsEnd /STK=3 /UG=Rn.16182 /UG_TITLE=ESTs BE109670 1391112_at BF405127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405127 /DB_XREF=gi:11393102 /DB_XREF=UI-R-CA1-biq-a-05-0-UI.s1 /CLONE=UI-R-CA1-biq-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.62449.1 /TIER=ConsEnd /STK=3 /UG=Rn.62449 /UG_TITLE=ESTs BF405127 Glycoprotein, alpha-galactosyltransferase 1 Ggta1 246766 NM_145674 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1391113_at BI289575 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289575 /DB_XREF=gi:14947286 /DB_XREF=UI-R-DK0-cff-f-06-0-UI.s1 /CLONE=UI-R-DK0-cff-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.68739.1 /TIER=ConsEnd /STK=3 /UG=Rn.68739 /UG_TITLE=ESTs, Weakly similar to RHOMBOID PROTEIN (D.melanogaster) BI289575 rhomboid, veinlet-like 3 (Drosophila) Rhbdl3 287556 NM_001105819 0007165 // signal transduction // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1391114_at BF402342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402342 /DB_XREF=gi:11390317 /DB_XREF=UI-R-CA0-bhn-b-04-0-UI.s1 /CLONE=UI-R-CA0-bhn-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.59701.1 /TIER=ConsEnd /STK=3 /UG=Rn.59701 /UG_TITLE=ESTs BF402342 1391115_at BM390642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390642 /DB_XREF=gi:18190695 /DB_XREF=UI-R-CN1-cjr-e-24-0-UI.s1 /CLONE=UI-R-CN1-cjr-e-24-0-UI /FEA=EST /CNT=3 /TID=Rn.41478.1 /TIER=ConsEnd /STK=3 /UG=Rn.41478 /UG_TITLE=ESTs BM390642 transmembrane protein 81 Tmem81 498229 NM_001017490 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1391116_at BG381692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381692 /DB_XREF=gi:13306164 /DB_XREF=UI-R-CT0-bue-c-09-0-UI.s1 /CLONE=UI-R-CT0-bue-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.44546.1 /TIER=ConsEnd /STK=3 /UG=Rn.44546 /UG_TITLE=ESTs, Highly similar to DYNAMIN 2 (R.norvegicus) BG381692 1391117_at BF404465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404465 /DB_XREF=gi:11392440 /DB_XREF=UI-R-CA1-bif-f-07-0-UI.s1 /CLONE=UI-R-CA1-bif-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.60514.1 /TIER=ConsEnd /STK=3 /UG=Rn.60514 /UG_TITLE=ESTs BF404465 PNMA-like 2 Pnmal2 308393 NM_001107481 1391118_at BI280337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280337 /DB_XREF=gi:14929021 /DB_XREF=UI-R-DE0-cag-g-07-0-UI.s1 /CLONE=UI-R-DE0-cag-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.27790.1 /TIER=ConsEnd /STK=3 /UG=Rn.27790 /UG_TITLE=ESTs BI280337 1391119_at BF399574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399574 /DB_XREF=gi:11384582 /DB_XREF=UI-R-CA0-bht-c-10-0-UI.s2 /CLONE=UI-R-CA0-bht-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.62048.1 /TIER=ConsEnd /STK=3 /UG=Rn.62048 /UG_TITLE=ESTs BF399574 1391120_at BF405020 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405020 /DB_XREF=gi:11392995 /DB_XREF=UI-R-CA1-bio-f-01-0-UI.s1 /CLONE=UI-R-CA1-bio-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.63632.1 /TIER=ConsEnd /STK=3 /UG=Rn.63632 /UG_TITLE=ESTs BF405020 1391121_at BF404955 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404955 /DB_XREF=gi:11392930 /DB_XREF=UI-R-CA1-bij-f-11-0-UI.s1 /CLONE=UI-R-CA1-bij-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.51831.1 /TIER=ConsEnd /STK=3 /UG=Rn.51831 /UG_TITLE=ESTs BF404955 pragma of Rnd2 Pragmin 306506 NM_001107315 0006468 // protein phosphorylation // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1391122_at BE110610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110610 /DB_XREF=gi:8502715 /DB_XREF=UI-R-BJ1-avu-a-03-0-UI.s1 /CLONE=UI-R-BJ1-avu-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.41841.1 /TIER=ConsEnd /STK=3 /UG=Rn.41841 /UG_TITLE=ESTs BE110610 1391123_at BE120682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120682 /DB_XREF=gi:8512787 /DB_XREF=UI-R-CA0-bay-c-11-0-UI.s1 /CLONE=UI-R-CA0-bay-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.46530.1 /TIER=ConsEnd /STK=3 /UG=Rn.46530 /UG_TITLE=ESTs BE120682 1391124_at BF403846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403846 /DB_XREF=gi:11391821 /DB_XREF=UI-R-CA1-bix-j-13-0-UI.s1 /CLONE=UI-R-CA1-bix-j-13-0-UI /FEA=EST /CNT=3 /TID=Rn.58307.1 /TIER=ConsEnd /STK=3 /UG=Rn.58307 /UG_TITLE=ESTs BF403846 1391125_at AI639331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639331 /DB_XREF=gi:4700365 /DB_XREF=rx00676s /CLONE=rx00676 /FEA=EST /CNT=3 /TID=Rn.33461.1 /TIER=ConsEnd /STK=3 /UG=Rn.33461 /UG_TITLE=ESTs AI639331 adaptor-related protein complex 1, sigma 3 subunit Ap1s3 367304 NM_001172150 1391126_at BG379351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379351 /DB_XREF=gi:13303823 /DB_XREF=UI-R-CS0-btu-g-10-0-UI.s1 /CLONE=UI-R-CS0-btu-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.59609.1 /TIER=ConsEnd /STK=3 /UG=Rn.59609 /UG_TITLE=ESTs BG379351 1391127_at BF400818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400818 /DB_XREF=gi:11388833 /DB_XREF=UI-R-CA0-bhg-f-03-0-UI.s1 /CLONE=UI-R-CA0-bhg-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.24253.1 /TIER=ConsEnd /STK=3 /UG=Rn.24253 /UG_TITLE=ESTs BF400818 1391128_at BE109129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109129 /DB_XREF=gi:8501234 /DB_XREF=UI-R-BS1-azb-c-08-0-UI.s1 /CLONE=UI-R-BS1-azb-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.32447.1 /TIER=ConsEnd /STK=3 /UG=Rn.32447 /UG_TITLE=ESTs BE109129 B-cell CLL/lymphoma 9-like Bcl9l 300673 NM_001106817 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0022604 // regulation of cell morphogenesis // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded 1391129_at BF394098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394098 /DB_XREF=gi:11378962 /DB_XREF=UI-R-CA0-bgz-c-02-0-UI.s1 /CLONE=UI-R-CA0-bgz-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.57574.1 /TIER=ConsEnd /STK=3 /UG=Rn.57574 /UG_TITLE=ESTs BF394098 1391130_at BI284481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284481 /DB_XREF=gi:14937202 /DB_XREF=UI-R-CX0s-ccr-e-11-0-UI.s1 /CLONE=UI-R-CX0s-ccr-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.37949.1 /TIER=ConsEnd /STK=3 /UG=Rn.37949 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) BI284481 similar to Zinc finger protein OZF (POZF-1) RGD1308782 308318 NM_001025677 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1391131_at BE112995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112995 /DB_XREF=gi:8505100 /DB_XREF=UI-R-BJ1-awf-b-12-0-UI.s1 /CLONE=UI-R-BJ1-awf-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.42017.1 /TIER=ConsEnd /STK=3 /UG=Rn.42017 /UG_TITLE=ESTs BE112995 1391132_at BE108033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108033 /DB_XREF=gi:8500138 /DB_XREF=UI-R-CA0-awz-f-05-0-UI.s1 /CLONE=UI-R-CA0-awz-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.51389.1 /TIER=ConsEnd /STK=3 /UG=Rn.51389 /UG_TITLE=ESTs BE108033 carbonic anhydrase 4 Car4 29242 NM_019174 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0048513 // organ development // inferred from expression pattern /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from expression pattern /// 0016529 // sarcoplasmic reticulum // inferred from direct assay /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from direct assay 0004089 // carbonate dehydratase activity // inferred from direct assay /// 0004089 // carbonate dehydratase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391133_at BI282622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282622 /DB_XREF=gi:14933575 /DB_XREF=UI-R-CW0s-ccd-b-11-0-UI.s1 /CLONE=UI-R-CW0s-ccd-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.66465.1 /TIER=ConsEnd /STK=3 /UG=Rn.66465 /UG_TITLE=ESTs BI282622 interleukin 17 receptor C Il17rc 297520 NM_001170565 /// XM_001078782 /// XM_216240 1391134_at BF404933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404933 /DB_XREF=gi:11392908 /DB_XREF=UI-R-CA1-bij-d-12-0-UI.s1 /CLONE=UI-R-CA1-bij-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.59630.1 /TIER=ConsEnd /STK=3 /UG=Rn.59630 /UG_TITLE=ESTs BF404933 transmembrane and coiled-coil domains 3 Tmco3 306607 NM_001135857 0006810 // transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0015299 // solute:hydrogen antiporter activity // inferred from electronic annotation 1391135_at AI175443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175443 /DB_XREF=gi:3726081 /DB_XREF=EST218990 /CLONE=RMUCN55 /FEA=EST /CNT=3 /TID=Rn.42125.1 /TIER=ConsEnd /STK=3 /UG=Rn.42125 /UG_TITLE=ESTs AI175443 1391136_at BI291725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291725 /DB_XREF=gi:14951548 /DB_XREF=UI-R-DM0-cis-f-02-0-UI.s1 /CLONE=UI-R-DM0-cis-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.79264.1 /TIER=ConsEnd /STK=3 /UG=Rn.79264 /UG_TITLE=ESTs, Highly similar to GLANDULAR KALLIKREIN 8 PRECURSOR , PROSTATIC (R.norvegicus) BI291725 kallikrein 1-related peptidase b21 Klk1b21 292866 NM_001013067 0006508 // proteolysis // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1391137_at BM386674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386674 /DB_XREF=gi:18186727 /DB_XREF=UI-R-CN1-cjg-n-05-0-UI.s1 /CLONE=UI-R-CN1-cjg-n-05-0-UI /FEA=EST /CNT=3 /TID=Rn.56974.1 /TIER=ConsEnd /STK=3 /UG=Rn.56974 /UG_TITLE=ESTs BM386674 similar to hypothetical protein FLJ20519 RGD1359334 295265 NM_001007638 0005576 // extracellular region // inferred from electronic annotation 1391138_at BF410536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410536 /DB_XREF=gi:11398511 /DB_XREF=UI-R-CA0-bme-h-05-0-UI.s1 /CLONE=UI-R-CA0-bme-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.61735.1 /TIER=ConsEnd /STK=3 /UG=Rn.61735 /UG_TITLE=ESTs BF410536 1391139_at BF397925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397925 /DB_XREF=gi:11382910 /DB_XREF=UI-R-BS2-bef-c-05-0-UI.s1 /CLONE=UI-R-BS2-bef-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.49618.1 /TIER=ConsEnd /STK=3 /UG=Rn.49618 /UG_TITLE=ESTs BF397925 1391140_at BF403952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403952 /DB_XREF=gi:11391927 /DB_XREF=UI-R-CA1-bjd-n-07-0-UI.s1 /CLONE=UI-R-CA1-bjd-n-07-0-UI /FEA=EST /CNT=3 /TID=Rn.60399.1 /TIER=ConsEnd /STK=3 /UG=Rn.60399 /UG_TITLE=ESTs BF403952 1391141_at BF413254 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413254 /DB_XREF=gi:11401243 /DB_XREF=UI-R-BT1-bny-f-06-0-UI.s1 /CLONE=UI-R-BT1-bny-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.53191.1 /TIER=ConsEnd /STK=3 /UG=Rn.53191 /UG_TITLE=ESTs BF413254 1391142_at BF400657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400657 /DB_XREF=gi:11388632 /DB_XREF=UI-R-CA0-bhd-h-11-0-UI.s1 /CLONE=UI-R-CA0-bhd-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.61518.1 /TIER=ConsEnd /STK=3 /UG=Rn.61518 /UG_TITLE=ESTs BF400657 1391143_at BF405315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405315 /DB_XREF=gi:11393290 /DB_XREF=UI-R-CA1-biw-k-23-0-UI.s1 /CLONE=UI-R-CA1-biw-k-23-0-UI /FEA=EST /CNT=3 /TID=Rn.51763.1 /TIER=ConsEnd /STK=3 /UG=Rn.51763 /UG_TITLE=ESTs BF405315 1391144_at AI227988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227988 /DB_XREF=gi:3811875 /DB_XREF=EST224683 /CLONE=RBRCO43 /FEA=EST /CNT=3 /TID=Rn.24820.1 /TIER=ConsEnd /STK=3 /UG=Rn.24820 /UG_TITLE=ESTs AI227988 1391145_at BE112120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112120 /DB_XREF=gi:8504225 /DB_XREF=UI-R-BJ1-avk-h-05-0-UI.s1 /CLONE=UI-R-BJ1-avk-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.16850.1 /TIER=ConsEnd /STK=3 /UG=Rn.16850 /UG_TITLE=ESTs BE112120 1391146_at BE111632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111632 /DB_XREF=gi:8503737 /DB_XREF=UI-R-BJ1-avv-a-09-0-UI.s1 /CLONE=UI-R-BJ1-avv-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.40289.1 /TIER=ConsEnd /STK=3 /UG=Rn.40289 /UG_TITLE=ESTs BE111632 cadherin 11 Cdh11 84407 NM_053392 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391147_at BF404398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404398 /DB_XREF=gi:11392373 /DB_XREF=UI-R-CA1-bie-g-07-0-UI.s1 /CLONE=UI-R-CA1-bie-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.46334.1 /TIER=ConsEnd /STK=3 /UG=Rn.46334 /UG_TITLE=ESTs BF404398 1391148_at AA957886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957886 /DB_XREF=gi:4277776 /DB_XREF=UI-R-E1-fv-h-04-0-UI.s2 /CLONE=UI-R-E1-fv-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.9395.1 /TIER=ConsEnd /STK=3 /UG=Rn.9395 /UG_TITLE=ESTs AA957886 1391149_at BF395606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395606 /DB_XREF=gi:11380576 /DB_XREF=UI-R-CM0-bjp-a-04-0-UI.s1 /CLONE=UI-R-CM0-bjp-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.63744.1 /TIER=ConsEnd /STK=3 /UG=Rn.63744 /UG_TITLE=ESTs BF395606 Splicing factor, arginine/serine-rich 7 Sfrs7 362687 NM_001039035 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391150_at BM387773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387773 /DB_XREF=gi:18187826 /DB_XREF=UI-R-CN1-cjk-e-12-0-UI.s1 /CLONE=UI-R-CN1-cjk-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.63887.1 /TIER=ConsEnd /STK=3 /UG=Rn.63887 /UG_TITLE=ESTs BM387773 1391151_at BI296941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296941 /DB_XREF=gi:14961861 /DB_XREF=UI-R-DK0-cgj-d-02-0-UI.s1 /CLONE=UI-R-DK0-cgj-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.23128.1 /TIER=ConsEnd /STK=3 /UG=Rn.23128 /UG_TITLE=ESTs, Weakly similar to ARSA MOUSE ARYLSULFATASE A PRECURSOR (M.musculus) BI296941 Arylsulfatase G Arsg 303631 NM_001047877 0006790 // sulfur compound metabolic process // inferred from electronic annotation /// 0006790 // sulfur compound metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from sequence or structural similarity /// 0005764 // lysosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004065 // arylsulfatase activity // not recorded /// 0004065 // arylsulfatase activity // inferred from sequence or structural similarity /// 0004168 // dolichol kinase activity // inferred from electronic annotation /// 0008484 // sulfuric ester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391152_at AI412781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412781 /DB_XREF=gi:4256285 /DB_XREF=EST241081 /CLONE=RBRDS62 /FEA=EST /CNT=3 /TID=Rn.64252.1 /TIER=ConsEnd /STK=3 /UG=Rn.64252 /UG_TITLE=ESTs AI412781 similar to similar to RIKEN cDNA 1700001E04 /// similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) LOC690700 /// LOC691600 690700 /// 691600 XM_001075284 /// XM_001078980 /// XM_002727359 1391153_at BE101678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101678 /DB_XREF=gi:8493776 /DB_XREF=UI-R-BT1-aqg-h-09-0-UI.s1 /CLONE=UI-R-BT1-aqg-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.19718.1 /TIER=ConsEnd /STK=3 /UG=Rn.19718 /UG_TITLE=ESTs BE101678 1391154_at BF394263 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394263 /DB_XREF=gi:11379127 /DB_XREF=UI-R-CA0-bhc-g-11-0-UI.s1 /CLONE=UI-R-CA0-bhc-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.52842.1 /TIER=ConsEnd /STK=3 /UG=Rn.52842 /UG_TITLE=ESTs BF394263 1391155_at AW528765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528765 /DB_XREF=gi:7171179 /DB_XREF=UI-R-BT1-aki-b-05-0-UI.s1 /CLONE=UI-R-BT1-aki-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.41589.1 /TIER=ConsEnd /STK=3 /UG=Rn.41589 /UG_TITLE=ESTs AW528765 1391156_at BI304040 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI304040 /DB_XREF=gi:14980320 /DB_XREF=UI-R-DR0-cjc-i-12-0-UI.s1 /CLONE=UI-R-DR0-cjc-i-12-0-UI /FEA=EST /CNT=3 /TID=Rn.27442.1 /TIER=ConsEnd /STK=3 /UG=Rn.27442 /UG_TITLE=ESTs, Weakly similar to A2GL_HUMAN LEUCINE-RICH ALPHA-2-GLYCOPROTEIN (H.sapiens) BI304040 podocan-like 1 Podnl1 288907 XM_001068151 /// XM_213845 0005515 // protein binding // inferred from electronic annotation 1391157_at BE104457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104457 /DB_XREF=gi:8496522 /DB_XREF=UI-R-BX0-aro-g-02-0-UI.s1 /CLONE=UI-R-BX0-aro-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.15531.1 /TIER=ConsEnd /STK=3 /UG=Rn.15531 /UG_TITLE=ESTs BE104457 1391158_a_at BE109041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109041 /DB_XREF=gi:8501146 /DB_XREF=UI-R-BS1-azc-c-09-0-UI.s1 /CLONE=UI-R-BS1-azc-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.6129.1 /TIER=ConsEnd /STK=3 /UG=Rn.6129 /UG_TITLE=ESTs, Weakly similar to T14171 ataxin-2 - mouse (M.musculus) BE109041 ataxin 2 Atxn2 288663 XM_001079639 /// XM_213779 0033962 // cytoplasmic mRNA processing body assembly // not recorded /// 0034063 // stress granule assembly // not recorded /// 0040015 // negative regulation of multicellular organism growth // not recorded 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005802 // trans-Golgi network // not recorded /// 0005844 // polysome // not recorded /// 0010494 // stress granule // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0050692 // DBD domain binding // not recorded 1391159_at AW525294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525294 /DB_XREF=gi:7167644 /DB_XREF=UI-R-BJ0p-aip-f-04-0-UI.s1 /CLONE=UI-R-BJ0p-aip-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.48648.1 /TIER=ConsEnd /STK=3 /UG=Rn.48648 /UG_TITLE=ESTs, Weakly similar to S46216 leukocyte antigen-related protein precursor - rat (R.norvegicus) AW525294 Obscurin-like 1 Obsl1 363259 XM_001062053 /// XM_343599 0055003 // cardiac myofibril assembly // not recorded 1391160_at BF399457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399457 /DB_XREF=gi:11384465 /DB_XREF=UI-R-CA1-bjb-l-21-0-UI.s1 /CLONE=UI-R-CA1-bjb-l-21-0-UI /FEA=EST /CNT=3 /TID=Rn.60212.1 /TIER=ConsEnd /STK=3 /UG=Rn.60212 /UG_TITLE=ESTs BF399457 1391161_at BE107322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107322 /DB_XREF=gi:8499427 /DB_XREF=UI-R-BS1-ays-d-09-0-UI.s1 /CLONE=UI-R-BS1-ays-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.16718.1 /TIER=ConsEnd /STK=3 /UG=Rn.16718 /UG_TITLE=ESTs BE107322 Wolf-Hirschhorn syndrome candidate 1 (human) Whsc1 680537 NM_001191552 /// XM_001058474 /// XM_002724986 /// XM_002724987 /// XM_002728122 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0003149 // membranous septum morphogenesis // not recorded /// 0003289 // atrial septum primum morphogenesis // not recorded /// 0003290 // atrial septum secundum morphogenesis // not recorded /// 0016568 // chromatin modification // not recorded /// 0018022 // peptidyl-lysine methylation // not recorded /// 0034968 // histone lysine methylation // not recorded /// 0060348 // bone development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0031965 // nuclear membrane // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1391162_at AW522589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522589 /DB_XREF=gi:7164974 /DB_XREF=UI-R-BO0-ahd-e-01-0-UI.s1 /CLONE=UI-R-BO0-ahd-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.45430.1 /TIER=ConsEnd /STK=3 /UG=Rn.45430 /UG_TITLE=ESTs AW522589 doublecortin domain containing 2 Dcdc2 291130 NM_001106110 0023034 // intracellular signaling pathway // inferred from electronic annotation 1391163_at BM385306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385306 /DB_XREF=gi:18185359 /DB_XREF=UI-R-EB1-clf-p-12-0-UI.s1 /CLONE=UI-R-EB1-clf-p-12-0-UI /FEA=EST /CNT=3 /TID=Rn.26534.1 /TIER=ConsEnd /STK=3 /UG=Rn.26534 /UG_TITLE=ESTs, Weakly similar to EF2 RAT ELONGATION FACTOR 2 (R.norvegicus) BM385306 elongation factor Tu GTP binding domain containing 1 Eftud1 308789 NM_001107534 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1391164_at BF394231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394231 /DB_XREF=gi:11379095 /DB_XREF=UI-R-CA0-bhc-c-08-0-UI.s1 /CLONE=UI-R-CA0-bhc-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.62039.1 /TIER=ConsEnd /STK=3 /UG=Rn.62039 /UG_TITLE=ESTs BF394231 translin-associated factor X interacting protein 1 Tsnaxip1 498944 NM_001109130 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded 1391165_at BF407514 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407514 /DB_XREF=gi:11395489 /DB_XREF=UI-R-BJ2-bqt-b-08-0-UI.s1 /CLONE=UI-R-BJ2-bqt-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.63673.1 /TIER=ConsEnd /STK=3 /UG=Rn.63673 /UG_TITLE=ESTs BF407514 Sclerosteosis Sost 80722 NM_030584 0001503 // ossification // inferred from expression pattern /// 0001503 // ossification // not recorded /// 0001503 // ossification // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0031012 // extracellular matrix // not recorded 0005515 // protein binding // inferred from direct assay /// 0008201 // heparin binding // inferred from electronic annotation 1391166_at BG378332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378332 /DB_XREF=gi:13302804 /DB_XREF=UI-R-CV1-bvq-h-01-0-UI.s1 /CLONE=UI-R-CV1-bvq-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.6285.1 /TIER=ConsEnd /STK=3 /UG=Rn.6285 /UG_TITLE=ESTs BG378332 1391167_at AW532567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532567 /DB_XREF=gi:7175021 /DB_XREF=UI-R-BS0-amp-h-05-0-UI.s1 /CLONE=UI-R-BS0-amp-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.47980.1 /TIER=ConsEnd /STK=3 /UG=Rn.47980 /UG_TITLE=ESTs AW532567 1391168_at BF407466 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407466 /DB_XREF=gi:11395441 /DB_XREF=UI-R-BJ2-bqs-f-01-0-UI.s1 /CLONE=UI-R-BJ2-bqs-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.61054.1 /TIER=ConsEnd /STK=3 /UG=Rn.61054 /UG_TITLE=ESTs BF407466 1391169_at BE120139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120139 /DB_XREF=gi:8512244 /DB_XREF=UI-R-CA0-bap-a-07-0-UI.s1 /CLONE=UI-R-CA0-bap-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.15984.1 /TIER=ConsEnd /STK=3 /UG=Rn.15984 /UG_TITLE=ESTs BE120139 transmembrane protein 117 Tmem117 500921 XM_001058576 /// XM_576330 0005783 // endoplasmic reticulum // not recorded 1391170_at BE115521 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115521 /DB_XREF=gi:8507626 /DB_XREF=UI-R-BS1-axw-g-12-0-UI.s1 /CLONE=UI-R-BS1-axw-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.52530.1 /TIER=ConsEnd /STK=3 /UG=Rn.52530 /UG_TITLE=ESTs, Weakly similar to A48205 All-1 protein +GTE form - mouse (M.musculus) BE115521 SET domain containing 5 Setd5 297514 NM_001106614 1391171_at AW534352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534352 /DB_XREF=gi:7176766 /DB_XREF=UI-R-C4-alo-d-12-0-UI.s1 /CLONE=UI-R-C4-alo-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.21675.1 /TIER=ConsEnd /STK=3 /UG=Rn.21675 /UG_TITLE=ESTs AW534352 1391172_at BE106088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106088 /DB_XREF=gi:8498190 /DB_XREF=UI-R-BO1-ask-g-07-0-UI.s1 /CLONE=UI-R-BO1-ask-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.47484.1 /TIER=ConsEnd /STK=3 /UG=Rn.47484 /UG_TITLE=ESTs BE106088 1391173_at BF389308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389308 /DB_XREF=gi:11374133 /DB_XREF=UI-R-BS2-bdm-c-06-0-UI.s1 /CLONE=UI-R-BS2-bdm-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.39054.1 /TIER=ConsEnd /STK=3 /UG=Rn.39054 /UG_TITLE=ESTs BF389308 1391174_at AI575727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575727 /DB_XREF=gi:4560103 /DB_XREF=UI-R-G0-uu-h-08-0-UI.s1 /CLONE=UI-R-G0-uu-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.28761.1 /TIER=ConsEnd /STK=3 /UG=Rn.28761 /UG_TITLE=ESTs AI575727 1391175_at BF400716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400716 /DB_XREF=gi:11388691 /DB_XREF=UI-R-CA0-bhe-f-07-0-UI.s1 /CLONE=UI-R-CA0-bhe-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.50457.1 /TIER=ConsEnd /STK=3 /UG=Rn.50457 /UG_TITLE=ESTs BF400716 1391176_at BF419661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419661 /DB_XREF=gi:11407650 /DB_XREF=UI-R-CA0-bpe-g-04-0-UI.s1 /CLONE=UI-R-CA0-bpe-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.53237.1 /TIER=ConsEnd /STK=3 /UG=Rn.53237 /UG_TITLE=ESTs, Highly similar to T00362 hypothetical protein KIAA0675 (H.sapiens) BF419661 DAZ interacting protein 3, zinc finger Dzip3 303963 XM_001058877 /// XM_221487 0000209 // protein polyubiquitination // not recorded 0005737 // cytoplasm // not recorded 0003723 // RNA binding // not recorded /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0031593 // polyubiquitin binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1391177_at BE119696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119696 /DB_XREF=gi:8511801 /DB_XREF=UI-R-CA0-baz-h-04-0-UI.s1 /CLONE=UI-R-CA0-baz-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.51489.1 /TIER=ConsEnd /STK=3 /UG=Rn.51489 /UG_TITLE=ESTs BE119696 taxilin alpha Txlna 682457 NM_001127633 1391178_at BE110066 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110066 /DB_XREF=gi:8502171 /DB_XREF=UI-R-CA0-axj-f-05-0-UI.s1 /CLONE=UI-R-CA0-axj-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.51804.1 /TIER=ConsEnd /STK=3 /UG=Rn.51804 /UG_TITLE=ESTs BE110066 1391179_at BF390958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390958 /DB_XREF=gi:11375805 /DB_XREF=UI-R-CA1-bce-e-08-0-UI.s1 /CLONE=UI-R-CA1-bce-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.61295.1 /TIER=ConsEnd /STK=3 /UG=Rn.61295 /UG_TITLE=ESTs BF390958 1391180_at BF396097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396097 /DB_XREF=gi:11381069 /DB_XREF=UI-R-CA1-bcb-c-07-0-UI.s1 /CLONE=UI-R-CA1-bcb-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.53228.1 /TIER=ConsEnd /STK=3 /UG=Rn.53228 /UG_TITLE=ESTs BF396097 1391181_at BF390734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390734 /DB_XREF=gi:11375581 /DB_XREF=UI-R-CA1-bco-g-11-0-UI.s1 /CLONE=UI-R-CA1-bco-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.7583.1 /TIER=ConsEnd /STK=3 /UG=Rn.7583 /UG_TITLE=ESTs BF390734 1391182_at BI295606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295606 /DB_XREF=gi:14959223 /DB_XREF=UI-R-DK0-cek.1-d-05-0-UI.s2 /CLONE=UI-R-DK0-cek.1-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.62017.1 /TIER=ConsEnd /STK=3 /UG=Rn.62017 /UG_TITLE=ESTs BI295606 1391183_at BI290796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290796 /DB_XREF=gi:14949709 /DB_XREF=UI-R-DK0-cga-e-05-0-UI.s1 /CLONE=UI-R-DK0-cga-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.27865.1 /TIER=ConsEnd /STK=3 /UG=Rn.27865 /UG_TITLE=ESTs BI290796 golgi associated PDZ and coiled-coil motif containing Gopc 309774 NM_001107631 0007289 // spermatid nucleus differentiation // not recorded /// 0007289 // spermatid nucleus differentiation // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded /// 0051260 // protein homooligomerization // not recorded /// 0051260 // protein homooligomerization // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0019717 // synaptosome // inferred from electronic annotation /// 0030140 // trans-Golgi network transport vesicle // not recorded /// 0030140 // trans-Golgi network transport vesicle // inferred from electronic annotation 0005083 // small GTPase regulator activity // not recorded /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042980 // cystic fibrosis transmembrane conductance regulator binding // not recorded /// 0042980 // cystic fibrosis transmembrane conductance regulator binding // inferred from electronic annotation 1391184_at BM390990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390990 /DB_XREF=gi:18191043 /DB_XREF=UI-R-CN1-cjm-i-07-0-UI.s1 /CLONE=UI-R-CN1-cjm-i-07-0-UI /FEA=EST /CNT=3 /TID=Rn.35756.1 /TIER=ConsEnd /STK=3 /UG=Rn.35756 /UG_TITLE=ESTs BM390990 regulatory factor X, 2 (influences HLA class II expression) Rfx2 301121 NM_001106877 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1391185_at BG377123 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377123 /DB_XREF=gi:13301635 /DB_XREF=UI-R-CU0-bvb-c-01-0-UI.s1 /CLONE=UI-R-CU0-bvb-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.53694.1 /TIER=ConsEnd /STK=3 /UG=Rn.53694 /UG_TITLE=ESTs BG377123 1391186_at BF397942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397942 /DB_XREF=gi:11382927 /DB_XREF=UI-R-BS2-bef-d-11-0-UI.s1 /CLONE=UI-R-BS2-bef-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.20435.1 /TIER=ConsEnd /STK=3 /UG=Rn.20435 /UG_TITLE=ESTs BF397942 1391187_at BI303019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303019 /DB_XREF=gi:14979299 /DB_XREF=UI-R-DO0-ciy-d-22-0-UI.s1 /CLONE=UI-R-DO0-ciy-d-22-0-UI /FEA=EST /CNT=3 /TID=Rn.25259.1 /TIER=ConsEnd /STK=3 /UG=Rn.25259 /UG_TITLE=ESTs BI303019 periplakin Ppl 302934 NM_001106976 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // not recorded 1391188_at BF389480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389480 /DB_XREF=gi:11374315 /DB_XREF=UI-R-CJ0-bfc-c-06-0-UI.s1 /CLONE=UI-R-CJ0-bfc-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.47750.1 /TIER=ConsEnd /STK=3 /UG=Rn.47750 /UG_TITLE=ESTs BF389480 RGD1560720 RGD1560720 313311 XM_001065281 /// XM_242905 1391189_a_at AA892659 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892659 /DB_XREF=gi:4132192 /DB_XREF=EST196462 /CLONE=RKIAV44 /FEA=EST /CNT=3 /TID=Rn.22732.1 /TIER=ConsEnd /STK=3 /UG=Rn.22732 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) AA892659 similar to Zinc finger and SCAN domain containing protein 2 (Zinc finger protein 29) RGD1559747 312310 NR_027235 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1391190_at BE117521 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117521 /DB_XREF=gi:8509626 /DB_XREF=UI-R-BS1-ayo-g-08-0-UI.s1 /CLONE=UI-R-BS1-ayo-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.41646.1 /TIER=ConsEnd /STK=3 /UG=Rn.41646 /UG_TITLE=ESTs BE117521 trinucleotide repeat containing 6a Tnrc6a 308971 NM_001107549 0009267 // cellular response to starvation // not recorded /// 0035278 // negative regulation of translation involved in gene silencing by miRNA // not recorded 0035068 // micro-ribonucleoprotein complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1391191_at BE100335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100335 /DB_XREF=gi:8492225 /DB_XREF=UI-R-BJ1-att-c-11-0-UI.s1 /CLONE=UI-R-BJ1-att-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.19240.1 /TIER=ConsEnd /STK=3 /UG=Rn.19240 /UG_TITLE=ESTs BE100335 Melanocyte proliferating gene 1 Myg1 300258 NM_001005545 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation 1391192_at BF414558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414558 /DB_XREF=gi:11402547 /DB_XREF=UI-R-CA0-bpb-b-01-0-UI.s1 /CLONE=UI-R-CA0-bpb-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.62581.1 /TIER=ConsEnd /STK=3 /UG=Rn.62581 /UG_TITLE=ESTs BF414558 1391193_at BI288564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288564 /DB_XREF=gi:14945275 /DB_XREF=UI-R-DK0-cdg-d-03-0-UI.s1 /CLONE=UI-R-DK0-cdg-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.48540.1 /TIER=ConsEnd /STK=3 /UG=Rn.48540 /UG_TITLE=ESTs BI288564 1391194_at BG377337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377337 /DB_XREF=gi:13301809 /DB_XREF=UI-R-CU0-bvc-c-08-0-UI.s1 /CLONE=UI-R-CU0-bvc-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.32153.1 /TIER=ConsEnd /STK=3 /UG=Rn.32153 /UG_TITLE=ESTs, Weakly similar to RENAL TRANSCRIPTION FACTOR KID-1 (R.norvegicus) BG377337 Sal-like 1 (Drosophila) Sall1 307740 NM_001107415 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001657 // ureteric bud development // not recorded /// 0001822 // kidney development // not recorded /// 0003337 // mesenchymal to epithelial transition involved in metanephros morphogenesis // not recorded /// 0007507 // heart development // not recorded /// 0008406 // gonad development // not recorded /// 0021983 // pituitary gland development // not recorded /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0030325 // adrenal gland development // not recorded /// 0031129 // inductive cell-cell signaling // not recorded /// 0042473 // outer ear morphogenesis // not recorded /// 0042733 // embryonic digit morphogenesis // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048566 // embryonic digestive tract development // not recorded /// 0060173 // limb development // not recorded /// 0061034 // olfactory bulb mitral cell layer development // not recorded 0000792 // heterochromatin // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0010369 // chromocenter // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008013 // beta-catenin binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // not recorded 1391195_at BF401728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401728 /DB_XREF=gi:11389703 /DB_XREF=UI-R-CA0-bgn-h-11-0-UI.s1 /CLONE=UI-R-CA0-bgn-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.58052.1 /TIER=ConsEnd /STK=3 /UG=Rn.58052 /UG_TITLE=ESTs BF401728 LUC7-like (S. cerevisiae) Luc7l 360503 NM_001024269 1391196_at BE112135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112135 /DB_XREF=gi:8504240 /DB_XREF=UI-R-BJ1-avg-b-01-0-UI.s1 /CLONE=UI-R-BJ1-avg-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.52054.1 /TIER=ConsEnd /STK=3 /UG=Rn.52054 /UG_TITLE=ESTs BE112135 1391197_at BF399523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399523 /DB_XREF=gi:11384531 /DB_XREF=UI-R-CA1-bjb-h-24-0-UI.s1 /CLONE=UI-R-CA1-bjb-h-24-0-UI /FEA=EST /CNT=3 /TID=Rn.58088.1 /TIER=ConsEnd /STK=3 /UG=Rn.58088 /UG_TITLE=ESTs BF399523 1391198_at BF401433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401433 /DB_XREF=gi:11389408 /DB_XREF=UI-R-CA0-bgt-e-12-0-UI.s1 /CLONE=UI-R-CA0-bgt-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.64325.1 /TIER=ConsEnd /STK=3 /UG=Rn.64325 /UG_TITLE=ESTs, Weakly similar to CAH4 RAT CARBONIC ANHYDRASE IV PRECURSOR (R.norvegicus) BF401433 carbonic anyhydrase 12 Car12 363085 NM_001080756 0006730 // one-carbon metabolic process // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0004089 // carbonate dehydratase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391199_at BE100715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100715 /DB_XREF=gi:8492653 /DB_XREF=UI-R-BJ1-auf-a-05-0-UI.s1 /CLONE=UI-R-BJ1-auf-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.16183.1 /TIER=ConsEnd /STK=3 /UG=Rn.16183 /UG_TITLE=ESTs BE100715 Fas (TNFRSF6)-associated via death domain Fadd 266610 NM_152937 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0051291 // protein heterooligomerization // inferred from physical interaction /// 0070265 // necrotic cell death // inferred from electronic annotation /// 0070265 // necrotic cell death // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0031264 // death-inducing signaling complex // not recorded /// 0031264 // death-inducing signaling complex // inferred from electronic annotation /// 0031265 // CD95 death-inducing signaling complex // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0044297 // cell body // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1391200_at AW530290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530290 /DB_XREF=gi:7172704 /DB_XREF=UI-R-BU0-amu-h-07-0-UI.s1 /CLONE=UI-R-BU0-amu-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.45898.1 /TIER=ConsEnd /STK=3 /UG=Rn.45898 /UG_TITLE=ESTs AW530290 sprouty homolog 3 (Drosophila) Spry3 498159 NM_001109063 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009966 // regulation of signal transduction // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 1391201_at AI012084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012084 /DB_XREF=gi:3225916 /DB_XREF=EST206535 /CLONE=RPLAS49 /FEA=EST /CNT=3 /TID=Rn.17801.1 /TIER=ConsEnd /STK=3 /UG=Rn.17801 /UG_TITLE=ESTs AI012084 WD repeat and HMG-box DNA binding protein 1 Wdhd1 305827 NM_001107255 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // inferred from electronic annotation 1391202_at AW252232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252232 /DB_XREF=gi:6595863 /DB_XREF=UI-R-BJ0-adt-c-07-0-UI.s1 /CLONE=UI-R-BJ0-adt-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.43987.1 /TIER=ConsEnd /STK=3 /UG=Rn.43987 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) AW252232 1391203_at BF415296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415296 /DB_XREF=gi:11403285 /DB_XREF=UI-R-CA0-bpc-c-02-0-UI.s1 /CLONE=UI-R-CA0-bpc-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.63661.1 /TIER=ConsEnd /STK=3 /UG=Rn.63661 /UG_TITLE=ESTs BF415296 1391204_at BF415830 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415830 /DB_XREF=gi:11403819 /DB_XREF=UI-R-CA1-bkf-d-12-0-UI.s1 /CLONE=UI-R-CA1-bkf-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.64405.1 /TIER=ConsEnd /STK=3 /UG=Rn.64405 /UG_TITLE=ESTs, Weakly similar to ADP-ribosylation factor 1-directed GTPase activating protein (R.norvegicus) BF415830 small ArfGAP2 Smap2 298500 NM_001100669 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1391205_at AA818139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818139 /DB_XREF=gi:4198653 /DB_XREF=UI-R-A0-am-a-08-0-UI.s1 /CLONE=UI-R-A0-am-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.16461.1 /TIER=ConsEnd /STK=3 /UG=Rn.16461 /UG_TITLE=ESTs AA818139 HEAT repeat containing 2 Heatr2 304332 NM_001134857 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391206_at AW533313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533313 /DB_XREF=gi:7175727 /DB_XREF=UI-R-BU0-anf-d-07-0-UI.s1 /CLONE=UI-R-BU0-anf-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.48092.1 /TIER=ConsEnd /STK=3 /UG=Rn.48092 /UG_TITLE=ESTs AW533313 similar to hypothetical protein FLJ10901 RGD1311892 289399 NM_001134502 1391207_at BF557676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557676 /DB_XREF=gi:11667406 /DB_XREF=UI-R-C0-ib-e-08-0-UI.r1 /CLONE=UI-R-C0-ib-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.13126.1 /TIER=ConsEnd /STK=3 /UG=Rn.13126 /UG_TITLE=ESTs BF557676 family with sequence similarity 19 (chemokine (C-C motif)-like), member A5 Fam19a5 500915 NM_001191991 /// XM_001053462 /// XM_002726967 /// XM_002729843 /// XM_576324 1391208_at BG379836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379836 /DB_XREF=gi:13304308 /DB_XREF=UI-R-CS0-btn-g-07-0-UI.s1 /CLONE=UI-R-CS0-btn-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.51568.1 /TIER=ConsEnd /STK=3 /UG=Rn.51568 /UG_TITLE=ESTs BG379836 protocadherin 20 Pcdh20 306081 NM_001107280 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1391209_at AI556505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556505 /DB_XREF=gi:4488868 /DB_XREF=UI-R-C2p-rk-h-07-0-UI.s1 /CLONE=UI-R-C2p-rk-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.21857.1 /TIER=ConsEnd /STK=3 /UG=Rn.21857 /UG_TITLE=ESTs AI556505 1391210_at AI175259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175259 /DB_XREF=gi:3725897 /DB_XREF=EST218796 /CLONE=RMUCG03 /FEA=EST /CNT=3 /TID=Rn.28872.1 /TIER=ConsEnd /STK=3 /UG=Rn.28872 /UG_TITLE=ESTs AI175259 1391211_at AI144936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144936 /DB_XREF=gi:3666735 /DB_XREF=UI-R-BT0-pp-f-09-0-UI.s1 /CLONE=UI-R-BT0-pp-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.19728.1 /TIER=ConsEnd /STK=3 /UG=Rn.19728 /UG_TITLE=ESTs AI144936 1391212_at BF418812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418812 /DB_XREF=gi:11406801 /DB_XREF=UI-R-BJ2-bqj-c-05-0-UI.s1 /CLONE=UI-R-BJ2-bqj-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.41329.1 /TIER=ConsEnd /STK=3 /UG=Rn.41329 /UG_TITLE=ESTs BF418812 transcription elongation factor A (SII)-like 1 Tceal1 302593 NM_001009675 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391213_at BF416151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416151 /DB_XREF=gi:11404140 /DB_XREF=UI-R-CA0-bkq-g-11-0-UI.s1 /CLONE=UI-R-CA0-bkq-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.52197.1 /TIER=ConsEnd /STK=3 /UG=Rn.52197 /UG_TITLE=ESTs BF416151 1391214_at BI289378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289378 /DB_XREF=gi:14946885 /DB_XREF=UI-R-DK0-cfg-c-03-0-UI.s1 /CLONE=UI-R-DK0-cfg-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.12813.1 /TIER=ConsEnd /STK=3 /UG=Rn.12813 /UG_TITLE=ESTs BI289378 family with sequence similarity 26, member F Fam26f 294430 NM_001024976 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1391215_at BF386303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386303 /DB_XREF=gi:11371127 /DB_XREF=UI-R-CA1-bbc-h-11-0-UI.s1 /CLONE=UI-R-CA1-bbc-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.60150.1 /TIER=ConsEnd /STK=3 /UG=Rn.60150 /UG_TITLE=ESTs BF386303 1391216_at BE114482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114482 /DB_XREF=gi:8506587 /DB_XREF=UI-R-CA0-axm-f-12-0-UI.s1 /CLONE=UI-R-CA0-axm-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.38580.1 /TIER=ConsEnd /STK=3 /UG=Rn.38580 /UG_TITLE=ESTs BE114482 zinc finger protein 509 Znf509 305428 NM_001107223 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391217_at BI289843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289843 /DB_XREF=gi:14947837 /DB_XREF=UI-R-DK0-cfo-h-09-0-UI.s1 /CLONE=UI-R-DK0-cfo-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.59755.1 /TIER=ConsEnd /STK=3 /UG=Rn.59755 /UG_TITLE=ESTs BI289843 1391218_at BI294343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294343 /DB_XREF=gi:14956715 /DB_XREF=UI-R-DK0-ceh-f-05-0-UI.s1 /CLONE=UI-R-DK0-ceh-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.52995.1 /TIER=ConsEnd /STK=3 /UG=Rn.52995 /UG_TITLE=ESTs BI294343 family with sequence similarity 76, member B Fam76b 367021 NM_001108994 1391219_at BF391545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391545 /DB_XREF=gi:11376398 /DB_XREF=UI-R-CA1-bcs-f-10-0-UI.s1 /CLONE=UI-R-CA1-bcs-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.20266.1 /TIER=ConsEnd /STK=3 /UG=Rn.20266 /UG_TITLE=ESTs BF391545 1391220_at BG381455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381455 /DB_XREF=gi:13305927 /DB_XREF=UI-R-CT0-buj-e-08-0-UI.s1 /CLONE=UI-R-CT0-buj-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.1538.1 /TIER=ConsEnd /STK=3 /UG=Rn.1538 /UG_TITLE=ESTs BG381455 ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) Esf1 366203 NM_001100771 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 1391221_at BE100776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100776 /DB_XREF=gi:8492674 /DB_XREF=UI-R-BJ1-auf-c-04-0-UI.s1 /CLONE=UI-R-BJ1-auf-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.18524.1 /TIER=ConsEnd /STK=3 /UG=Rn.18524 /UG_TITLE=ESTs BE100776 transmembrane protein 67 Tmem67 313067 NM_001107916 0010826 // negative regulation of centrosome duplication // inferred from electronic annotation /// 0010826 // negative regulation of centrosome duplication // not recorded /// 0030433 // ER-associated protein catabolic process // inferred from electronic annotation /// 0030433 // ER-associated protein catabolic process // not recorded /// 0042384 // cilium assembly // inferred from mutant phenotype /// 0042384 // cilium assembly // not recorded /// 0042384 // cilium assembly // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0005932 // microtubule basal body // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // not recorded /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0060170 // cilium membrane // inferred from electronic annotation /// 0060170 // cilium membrane // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // not recorded 1391222_at AA965076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965076 /DB_XREF=gi:4279950 /DB_XREF=UI-R-C0-gz-a-08-0-UI.s1 /CLONE=UI-R-C0-gz-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.33012.1 /TIER=ConsEnd /STK=3 /UG=Rn.33012 /UG_TITLE=ESTs, Moderately similar to T00389 hypothetical protein KIAA0615 (H.sapiens) AA965076 Nedd4 binding protein 1 N4bp1 291921 XM_001068071 /// XM_214648 0031397 // negative regulation of protein ubiquitination // not recorded /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded 0005730 // nucleolus // not recorded /// 0016605 // PML body // not recorded 0005515 // protein binding // not recorded 1391223_at BF394238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394238 /DB_XREF=gi:11379102 /DB_XREF=UI-R-CA0-bhc-d-04-0-UI.s1 /CLONE=UI-R-CA0-bhc-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.61939.1 /TIER=ConsEnd /STK=3 /UG=Rn.61939 /UG_TITLE=ESTs BF394238 1391224_at AI169436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169436 /DB_XREF=gi:4134402 /DB_XREF=EST215288 /CLONE=RKIBS37 /FEA=EST /CNT=3 /TID=Rn.28024.1 /TIER=ConsEnd /STK=3 /UG=Rn.28024 /UG_TITLE=ESTs AI169436 similar to 4921517L17Rik protein RGD1311678 296311 NM_001177681 /// XM_002726263 /// XM_002729240 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1391225_at BF392551 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392551 /DB_XREF=gi:11377408 /DB_XREF=UI-R-CA0-bfk-e-06-0-UI.s1 /CLONE=UI-R-CA0-bfk-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.57502.1 /TIER=ConsEnd /STK=3 /UG=Rn.57502 /UG_TITLE=ESTs BF392551 1391226_at BG372540 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372540 /DB_XREF=gi:13269077 /DB_XREF=UI-R-CV1-brv-d-03-0-UI.s1 /CLONE=UI-R-CV1-brv-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.76797.1 /TIER=ConsEnd /STK=3 /UG=Rn.76797 /UG_TITLE=ESTs, Moderately similar to GNRP RAT GUANINE NUCLEOTIDE RELEASING PROTEIN (R.norvegicus) BG372540 RAS protein-specific guanine nucleotide-releasing factor 2 Rasgrf2 114513 NM_053721 0006915 // apoptosis // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391227_at AW530423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530423 /DB_XREF=gi:7172837 /DB_XREF=UI-R-BU0-amw-g-03-0-UI.s1 /CLONE=UI-R-BU0-amw-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.20252.1 /TIER=ConsEnd /STK=3 /UG=Rn.20252 /UG_TITLE=ESTs AW530423 1391228_at BE106353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106353 /DB_XREF=gi:8498455 /DB_XREF=UI-R-BT1-asv-a-02-0-UI.s1 /CLONE=UI-R-BT1-asv-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.14627.1 /TIER=ConsEnd /STK=3 /UG=Rn.14627 /UG_TITLE=ESTs BE106353 radial spoke head 1 homolog (Chlamydomonas) Rsph1 361818 NM_001012176 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 1391229_at BG381458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381458 /DB_XREF=gi:13305930 /DB_XREF=UI-R-CT0-buj-e-11-0-UI.s1 /CLONE=UI-R-CT0-buj-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.45226.1 /TIER=ConsEnd /STK=3 /UG=Rn.45226 /UG_TITLE=ESTs BG381458 calcium/calmodulin-dependent protein kinase IG Camk1g 171358 NM_182842 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016310 // phosphorylation // not recorded /// 0019722 // calcium-mediated signaling // non-traceable author statement 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005954 // calcium- and calmodulin-dependent protein kinase complex // inferred from electronic annotation /// 0005954 // calcium- and calmodulin-dependent protein kinase complex // not recorded /// 0012505 // endomembrane system // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from direct assay /// 0004683 // calmodulin-dependent protein kinase activity // not recorded /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1391230_at BF394904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394904 /DB_XREF=gi:11379864 /DB_XREF=UI-R-CA0-bgf-c-04-0-UI.s1 /CLONE=UI-R-CA0-bgf-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.57412.1 /TIER=ConsEnd /STK=3 /UG=Rn.57412 /UG_TITLE=ESTs BF394904 1391231_at AI639127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639127 /DB_XREF=gi:4700161 /DB_XREF=rx00223s /CLONE=rx00223 /FEA=EST /CNT=3 /TID=Rn.9364.1 /TIER=ConsEnd /STK=3 /UG=Rn.9364 /UG_TITLE=ESTs AI639127 cation channel, sperm associated 2 Catsper2 366174 NM_001012220 0001539 // ciliary or flagellar motility // inferred from electronic annotation /// 0001539 // ciliary or flagellar motility // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0009566 // fertilization // inferred from electronic annotation /// 0009566 // fertilization // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030317 // sperm motility // inferred from electronic annotation /// 0030317 // sperm motility // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0009434 // microtubule-based flagellum // inferred from electronic annotation /// 0009434 // microtubule-based flagellum // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019861 // flagellum // inferred from electronic annotation /// 0020017 // flagellar membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391232_at BG381215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381215 /DB_XREF=gi:13305687 /DB_XREF=UI-R-CT0-buh-e-12-0-UI.s1 /CLONE=UI-R-CT0-buh-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.62432.1 /TIER=ConsEnd /STK=3 /UG=Rn.62432 /UG_TITLE=ESTs BG381215 1391233_at BG377517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377517 /DB_XREF=gi:13301989 /DB_XREF=UI-R-CU0-bvd-g-02-0-UI.s1 /CLONE=UI-R-CU0-bvd-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.41807.1 /TIER=ConsEnd /STK=3 /UG=Rn.41807 /UG_TITLE=ESTs BG377517 1391234_at BE107707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107707 /DB_XREF=gi:8499812 /DB_XREF=UI-R-CA0-aww-a-05-0-UI.s1 /CLONE=UI-R-CA0-aww-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.49683.1 /TIER=ConsEnd /STK=3 /UG=Rn.49683 /UG_TITLE=ESTs BE107707 1391235_at BF394807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394807 /DB_XREF=gi:11379765 /DB_XREF=UI-R-CA0-bfz-b-11-0-UI.s1 /CLONE=UI-R-CA0-bfz-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.58357.1 /TIER=ConsEnd /STK=3 /UG=Rn.58357 /UG_TITLE=ESTs BF394807 1391236_at BG380318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380318 /DB_XREF=gi:13304790 /DB_XREF=UI-R-CS0-btv-f-10-0-UI.s1 /CLONE=UI-R-CS0-btv-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.46361.1 /TIER=ConsEnd /STK=3 /UG=Rn.46361 /UG_TITLE=ESTs, Weakly similar to I63168 gene Ube1x protein - rat (R.norvegicus) BG380318 ubiquitin-like modifier activating enzyme 6 Uba6 305268 NM_001107213 0006464 // protein modification process // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded 0005737 // cytoplasm // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008641 // small protein activating enzyme activity // inferred from electronic annotation /// 0019780 // FAT10 activating enzyme activity // not recorded 1391237_at BE119564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119564 /DB_XREF=gi:8511669 /DB_XREF=UI-R-CA0-bag-c-03-0-UI.s1 /CLONE=UI-R-CA0-bag-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.51021.1 /TIER=ConsEnd /STK=3 /UG=Rn.51021 /UG_TITLE=ESTs BE119564 1391238_at BF387292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387292 /DB_XREF=gi:11372116 /DB_XREF=UI-R-CA1-bbl-g-07-0-UI.s1 /CLONE=UI-R-CA1-bbl-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.57998.1 /TIER=ConsEnd /STK=3 /UG=Rn.57998 /UG_TITLE=ESTs BF387292 1391239_at BF412928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412928 /DB_XREF=gi:11400917 /DB_XREF=UI-R-CA0-boc-d-11-0-UI.s1 /CLONE=UI-R-CA0-boc-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.58888.1 /TIER=ConsEnd /STK=3 /UG=Rn.58888 /UG_TITLE=ESTs BF412928 Similar to hypothetical protein FLJ22175 RGD1306926 303742 XM_001081787 /// XM_221197 1391240_at AI013954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013954 /DB_XREF=gi:3228010 /DB_XREF=EST208629 /CLONE=RSPBZ95 /FEA=EST /CNT=3 /TID=Rn.18061.1 /TIER=ConsEnd /STK=3 /UG=Rn.18061 /UG_TITLE=ESTs, Weakly similar to A42855 N-heparan sulfate sulfotransferase - rat (R.norvegicus) AI013954 heparan sulfate (glucosamine) 3-O-sulfotransferase 6 Hs3st6 684979 NM_001109450 0008152 // metabolic process // not recorded 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0008467 // [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity // not recorded 1391241_at BF394755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394755 /DB_XREF=gi:11379713 /DB_XREF=UI-R-CA0-bge-f-01-0-UI.s1 /CLONE=UI-R-CA0-bge-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.51946.1 /TIER=ConsEnd /STK=3 /UG=Rn.51946 /UG_TITLE=ESTs BF394755 ets variant 1 Etv1 362733 NM_001108709 /// NM_001163156 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007517 // muscle organ development // not recorded /// 0007638 // mechanosensory behavior // not recorded /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1391242_at AI112229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112229 /DB_XREF=gi:3512178 /DB_XREF=UI-R-Y0-mh-d-07-0-UI.s1 /CLONE=UI-R-Y0-mh-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.23592.1 /TIER=ConsEnd /STK=3 /UG=Rn.23592 /UG_TITLE=ESTs AI112229 1391243_at AI575416 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575416 /DB_XREF=gi:4559792 /DB_XREF=UI-R-Y0-vg-b-02-0-UI.s1 /CLONE=UI-R-Y0-vg-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.38428.1 /TIER=ConsEnd /STK=3 /UG=Rn.38428 /UG_TITLE=ESTs AI575416 1391244_at BF386142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386142 /DB_XREF=gi:11370966 /DB_XREF=UI-R-CA1-bba-e-02-0-UI.s1 /CLONE=UI-R-CA1-bba-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.62851.1 /TIER=ConsEnd /STK=3 /UG=Rn.62851 /UG_TITLE=ESTs BF386142 1391245_at BE120894 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120894 /DB_XREF=gi:8512999 /DB_XREF=UI-R-BS1-azt-g-02-0-UI.s1 /CLONE=UI-R-BS1-azt-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.55082.1 /TIER=ConsEnd /STK=3 /UG=Rn.55082 /UG_TITLE=ESTs, Weakly similar to GFI1 RAT ZINC FINGER PROTEIN GFI-1 (R.norvegicus) BE120894 Ng35 pseudogene Ng35 309613 NM_001134991 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391246_at BF390318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390318 /DB_XREF=gi:11375164 /DB_XREF=UI-R-CA1-bcn-e-06-0-UI.s1 /CLONE=UI-R-CA1-bcn-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.45419.1 /TIER=ConsEnd /STK=3 /UG=Rn.45419 /UG_TITLE=ESTs BF390318 0005509 // calcium ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1391247_at BF403208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403208 /DB_XREF=gi:11391183 /DB_XREF=UI-R-CA0-bhs-h-11-0-UI.s1 /CLONE=UI-R-CA0-bhs-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.62836.1 /TIER=ConsEnd /STK=3 /UG=Rn.62836 /UG_TITLE=ESTs BF403208 1391248_at BF419702 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419702 /DB_XREF=gi:11407691 /DB_XREF=UI-R-CA0-bpf-c-06-0-UI.s1 /CLONE=UI-R-CA0-bpf-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.63631.1 /TIER=ConsEnd /STK=3 /UG=Rn.63631 /UG_TITLE=ESTs BF419702 1391249_at BF392349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392349 /DB_XREF=gi:11377206 /DB_XREF=UI-R-CA0-bfi-b-01-0-UI.s1 /CLONE=UI-R-CA0-bfi-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.61536.1 /TIER=ConsEnd /STK=3 /UG=Rn.61536 /UG_TITLE=ESTs BF392349 similar to DD1 RGD1312005 291580 NM_001106144 1391250_at BG374216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374216 /DB_XREF=gi:13298688 /DB_XREF=UI-R-CV1-bsm-g-03-0-UI.s1 /CLONE=UI-R-CV1-bsm-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.63203.1 /TIER=ConsEnd /STK=3 /UG=Rn.63203 /UG_TITLE=ESTs, Moderately similar to I38604 p53-binding protein 1 (H.sapiens) BG374216 1391251_at BI290666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290666 /DB_XREF=gi:14949451 /DB_XREF=UI-R-DK0-cfx-h-10-0-UI.s1 /CLONE=UI-R-DK0-cfx-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.20351.1 /TIER=ConsEnd /STK=3 /UG=Rn.20351 /UG_TITLE=ESTs BI290666 1391252_at BI290717 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290717 /DB_XREF=gi:14949550 /DB_XREF=UI-R-DK0-cfy-e-10-0-UI.s1 /CLONE=UI-R-DK0-cfy-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.74790.1 /TIER=ConsEnd /STK=3 /UG=Rn.74790 /UG_TITLE=ESTs BI290717 ring finger protein 41 Rnf41 362814 NM_001012195 0000209 // protein polyubiquitination // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0080010 // regulation of oxygen and reactive oxygen species metabolic process // not recorded 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0031386 // protein tag // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391253_at BI294271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294271 /DB_XREF=gi:14956573 /DB_XREF=UI-R-DK0-cea-f-08-0-UI.s1 /CLONE=UI-R-DK0-cea-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.38294.1 /TIER=ConsEnd /STK=3 /UG=Rn.38294 /UG_TITLE=ESTs BI294271 1391254_at BF412722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412722 /DB_XREF=gi:11400711 /DB_XREF=UI-R-BT1-bnt-d-10-0-UI.s1 /CLONE=UI-R-BT1-bnt-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.63070.1 /TIER=ConsEnd /STK=3 /UG=Rn.63070 /UG_TITLE=ESTs BF412722 1391255_at BE110035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110035 /DB_XREF=gi:8502140 /DB_XREF=UI-R-CA0-axj-c-07-0-UI.s1 /CLONE=UI-R-CA0-axj-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.25465.1 /TIER=ConsEnd /STK=3 /UG=Rn.25465 /UG_TITLE=ESTs BE110035 zinc finger, MYND-type containing 15 Zmynd15 287457 NM_001105800 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391256_at AA900781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900781 /DB_XREF=gi:4233276 /DB_XREF=UI-R-E0-dn-f-10-0-UI.s1 /CLONE=UI-R-E0-dn-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.32479.1 /TIER=ConsEnd /STK=3 /UG=Rn.32479 /UG_TITLE=ESTs AA900781 1391257_at BF412175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412175 /DB_XREF=gi:11400164 /DB_XREF=UI-R-BT1-bmu-g-04-0-UI.s1 /CLONE=UI-R-BT1-bmu-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.62016.1 /TIER=ConsEnd /STK=3 /UG=Rn.62016 /UG_TITLE=ESTs BF412175 1391258_at AI178337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178337 /DB_XREF=gi:3728975 /DB_XREF=EST222005 /CLONE=RPLCP27 /FEA=EST /CNT=3 /TID=Rn.6694.1 /TIER=ConsEnd /STK=3 /UG=Rn.6694 /UG_TITLE=ESTs AI178337 1391259_at BE104618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104618 /DB_XREF=gi:8496718 /DB_XREF=UI-R-BX0-arr-e-05-0-UI.s1 /CLONE=UI-R-BX0-arr-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.46800.1 /TIER=ConsEnd /STK=3 /UG=Rn.46800 /UG_TITLE=ESTs BE104618 1391260_at BF388662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388662 /DB_XREF=gi:11373486 /DB_XREF=UI-R-BS2-bdb-b-02-0-UI.s1 /CLONE=UI-R-BS2-bdb-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.12803.1 /TIER=ConsEnd /STK=3 /UG=Rn.12803 /UG_TITLE=ESTs BF388662 1391261_at BF394645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394645 /DB_XREF=gi:11379591 /DB_XREF=UI-R-CA0-bfy-b-11-0-UI.s1 /CLONE=UI-R-CA0-bfy-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.57680.1 /TIER=ConsEnd /STK=3 /UG=Rn.57680 /UG_TITLE=ESTs BF394645 1391262_at BE105606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105606 /DB_XREF=gi:8497708 /DB_XREF=UI-R-BX0-ash-h-04-0-UI.s1 /CLONE=UI-R-BX0-ash-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.51929.1 /TIER=ConsEnd /STK=3 /UG=Rn.51929 /UG_TITLE=ESTs BE105606 Sumo1/sentrin/SMT3 specific peptidase 5 Senp5 303874 XM_002724729 /// XM_221369 0006508 // proteolysis // inferred from electronic annotation 0008234 // cysteine-type peptidase activity // inferred from electronic annotation 1391263_at BF401317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401317 /DB_XREF=gi:11389292 /DB_XREF=UI-R-CA0-bgs-c-07-0-UI.s1 /CLONE=UI-R-CA0-bgs-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.61972.1 /TIER=ConsEnd /STK=3 /UG=Rn.61972 /UG_TITLE=ESTs BF401317 5-hydroxytryptamine (serotonin) receptor 4 Htr4 25324 NM_012853 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from mutant phenotype /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0050890 // cognition // traceable author statement 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // inferred from mutant phenotype /// 0004993 // serotonin receptor activity // not recorded 1391264_at AA875301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875301 /DB_XREF=gi:4231180 /DB_XREF=UI-R-E0-cn-f-01-0-UI.s1 /CLONE=UI-R-E0-cn-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.34345.1 /TIER=ConsEnd /STK=3 /UG=Rn.34345 /UG_TITLE=ESTs AA875301 1391265_at BF400749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400749 /DB_XREF=gi:11388724 /DB_XREF=UI-R-CA0-bhf-b-03-0-UI.s1 /CLONE=UI-R-CA0-bhf-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.59633.1 /TIER=ConsEnd /STK=3 /UG=Rn.59633 /UG_TITLE=ESTs BF400749 LRRGT00186 LOC498236 498236 NM_001047926 0005488 // binding // inferred from electronic annotation 1391266_at AI072881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072881 /DB_XREF=gi:3399075 /DB_XREF=UI-R-Y0-mc-b-07-0-UI.s1 /CLONE=UI-R-Y0-mc-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.21822.1 /TIER=ConsEnd /STK=3 /UG=Rn.21822 /UG_TITLE=ESTs AI072881 1391267_at BF413580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413580 /DB_XREF=gi:11401569 /DB_XREF=UI-R-CA0-bof-h-09-0-UI.s1 /CLONE=UI-R-CA0-bof-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.62392.1 /TIER=ConsEnd /STK=3 /UG=Rn.62392 /UG_TITLE=ESTs BF413580 IQ motif containing E Iqce 304318 XM_001073653 /// XM_002724781 /// XM_002727940 /// XM_221965 0005739 // mitochondrion // not recorded 1391268_at AI070764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070764 /DB_XREF=gi:3397015 /DB_XREF=UI-R-C2-no-g-04-0-UI.s1 /CLONE=UI-R-C2-no-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.19845.1 /TIER=ConsEnd /STK=3 /UG=Rn.19845 /UG_TITLE=ESTs, Moderately similar to NARY MOUSE MEMBRANE-ASSOCIATED LYMPHOCYTE NAD(P)(+)--ARGININE ADP-RIBOSYLTRANSFERASE PRECURSOR (M.musculus) AI070764 ADP-ribosyltransferase 5 Art5 259167 NM_001013039 0006471 // protein ADP-ribosylation // inferred from electronic annotation /// 0006471 // protein ADP-ribosylation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003950 // NAD+ ADP-ribosyltransferase activity // not recorded /// 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from electronic annotation /// 0003953 // NAD+ nucleosidase activity // not recorded /// 0003953 // NAD+ nucleosidase activity // inferred from electronic annotation /// 0003956 // NAD(P)+-protein-arginine ADP-ribosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1391269_at BG372987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372987 /DB_XREF=gi:13269524 /DB_XREF=UI-R-CV1-bsb-c-01-0-UI.s1 /CLONE=UI-R-CV1-bsb-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.20580.1 /TIER=ConsEnd /STK=3 /UG=Rn.20580 /UG_TITLE=ESTs BG372987 pim-2 oncogene Pim2 317366 NM_001172103 1391270_at BE112177 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112177 /DB_XREF=gi:8504282 /DB_XREF=UI-R-BJ1-avg-e-12-0-UI.s1 /CLONE=UI-R-BJ1-avg-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.41337.1 /TIER=ConsEnd /STK=3 /UG=Rn.41337 /UG_TITLE=ESTs BE112177 cyclin M3 Cnnm3 301345 NM_001106901 0005515 // protein binding // not recorded 1391271_at AA998044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998044 /DB_XREF=gi:4287123 /DB_XREF=UI-R-C0-hx-h-04-0-UI.s1 /CLONE=UI-R-C0-hx-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.23960.1 /TIER=ConsEnd /STK=3 /UG=Rn.23960 /UG_TITLE=ESTs AA998044 neuron navigator 2 Nav2 171563 NM_138529 0007399 // nervous system development // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1391272_at H33448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33448 /DB_XREF=gi:978865 /DB_XREF=EST109458 /CLONE=RPNAR85 /FEA=EST /CNT=3 /TID=Rn.14640.1 /TIER=ConsEnd /STK=3 /UG=Rn.14640 /UG_TITLE=ESTs H33448 WAP four-disulfide core domain 6A Wfdc6a 685153 XM_001062561 /// XM_002726295 0005576 // extracellular region // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1391273_at AA892404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892404 /DB_XREF=gi:3019283 /DB_XREF=EST196207 /CLONE=RKIAQ05 /FEA=EST /CNT=3 /TID=Rn.22741.1 /TIER=ConsEnd /STK=3 /UG=Rn.22741 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) AA892404 Na+ dependent glucose transporter 1 Naglt1 337920 NM_176080 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation 0005355 // glucose transmembrane transporter activity // inferred from direct assay /// 0015293 // symporter activity // inferred from electronic annotation 1391274_at BI292056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292056 /DB_XREF=gi:14952186 /DB_XREF=UI-R-DN0-ciu-k-04-0-UI.s1 /CLONE=UI-R-DN0-ciu-k-04-0-UI /FEA=EST /CNT=3 /TID=Rn.49860.1 /TIER=ConsEnd /STK=3 /UG=Rn.49860 /UG_TITLE=ESTs BI292056 1391275_at AI575658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575658 /DB_XREF=gi:4560034 /DB_XREF=UI-R-Y0-vi-f-12-0-UI.s1 /CLONE=UI-R-Y0-vi-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.38652.1 /TIER=ConsEnd /STK=3 /UG=Rn.38652 /UG_TITLE=ESTs AI575658 1391276_at BF410131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410131 /DB_XREF=gi:11398106 /DB_XREF=UI-R-CA1-bjt-h-04-0-UI.s1 /CLONE=UI-R-CA1-bjt-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.51045.1 /TIER=ConsEnd /STK=3 /UG=Rn.51045 /UG_TITLE=ESTs BF410131 AT rich interactive domain 2 (Arid-rfx like) Arid2 366980 XM_001059099 /// XM_345867 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1391277_at BF548433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548433 /DB_XREF=gi:11639540 /DB_XREF=UI-R-C0-hy-g-05-0-UI.r1 /CLONE=UI-R-C0-hy-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.11640.1 /TIER=ConsEnd /STK=3 /UG=Rn.11640 /UG_TITLE=ESTs, Highly similar to S105 MOUSE S100 CALCIUM-BINDING PROTEIN A5 (R.norvegicus) BF548433 S100 calcium binding protein A5 S100a5 295211 NM_001106438 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005507 // copper ion binding // not recorded /// 0005507 // copper ion binding // inferred from sequence or structural similarity /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1391278_at BE107754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107754 /DB_XREF=gi:8499859 /DB_XREF=UI-R-CA0-aww-e-07-0-UI.s1 /CLONE=UI-R-CA0-aww-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.48132.1 /TIER=ConsEnd /STK=3 /UG=Rn.48132 /UG_TITLE=ESTs, Moderately similar to THYROID TRANSCRIPTION FACTOR 1 (R.norvegicus) BE107754 NK2 transcription factor related, locus 4 (Drosophila) Nkx2-4 366213 XM_001055558 /// XM_345445 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1391279_at AI112564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112564 /DB_XREF=gi:3512513 /DB_XREF=UI-R-Y0-mn-f-11-0-UI.s1 /CLONE=UI-R-Y0-mn-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.26816.1 /TIER=ConsEnd /STK=3 /UG=Rn.26816 /UG_TITLE=ESTs, Highly similar to ADSV MOUSE ADSEVERIN (M.musculus) AI112564 Scinderin Scin 298975 NM_198748 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0045654 // positive regulation of megakaryocyte differentiation // inferred from electronic annotation /// 0045654 // positive regulation of megakaryocyte differentiation // not recorded /// 0051014 // actin filament severing // inferred from electronic annotation /// 0051014 // actin filament severing // not recorded 0043234 // protein complex // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation 1391280_at AW529333 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529333 /DB_XREF=gi:7171747 /DB_XREF=UI-R-BT1-akm-g-05-0-UI.s1 /CLONE=UI-R-BT1-akm-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.45018.1 /TIER=ConsEnd /STK=3 /UG=Rn.45018 /UG_TITLE=ESTs, Moderately similar to T32961 hypothetical protein C11D2.4 - Caenorhabditis elegans (C.elegans) AW529333 malignant T cell amplified sequence 2 Mcts2 689500 XM_001071410 /// XM_002726252 0003723 // RNA binding // inferred from electronic annotation 1391281_at BF394576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394576 /DB_XREF=gi:11379445 /DB_XREF=UI-R-CA0-bfx-d-09-0-UI.s1 /CLONE=UI-R-CA0-bfx-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.53510.1 /TIER=ConsEnd /STK=3 /UG=Rn.53510 /UG_TITLE=ESTs BF394576 1391282_at AI029285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029285 /DB_XREF=gi:4297510 /DB_XREF=UI-R-C0-iq-d-05-0-UI.s1 /CLONE=UI-R-C0-iq-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.13192.1 /TIER=ConsEnd /STK=3 /UG=Rn.13192 /UG_TITLE=ESTs AI029285 similar to dJ55C23.6 gene product RGD1306962 309570 XM_001055616 /// XM_220112 0055085 // transmembrane transport // inferred from electronic annotation 1391283_at AI713146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI713146 /DB_XREF=gi:5016946 /DB_XREF=UI-R-Y0-aba-g-07-0-UI.s1 /CLONE=UI-R-Y0-aba-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.15514.1 /TIER=ConsEnd /STK=3 /UG=Rn.15514 /UG_TITLE=ESTs AI713146 1391284_at BE099274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099274 /DB_XREF=gi:8491150 /DB_XREF=UI-R-BJ1-aub-d-09-0-UI.s1 /CLONE=UI-R-BJ1-aub-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.40795.1 /TIER=ConsEnd /STK=3 /UG=Rn.40795 /UG_TITLE=ESTs BE099274 SLIT-ROBO Rho GTPase activating protein 2 Srgap2 360840 NM_001134958 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded 0005515 // protein binding // not recorded 1391285_at BE097015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097015 /DB_XREF=gi:8487946 /DB_XREF=UI-R-BS0-aoh-h-11-0-UI.s1 /CLONE=UI-R-BS0-aoh-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.23612.1 /TIER=ConsEnd /STK=3 /UG=Rn.23612 /UG_TITLE=ESTs BE097015 zinc finger, FYVE domain containing 9 Zfyve9 313477 NM_001107952 0031901 // early endosome membrane // not recorded 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391286_at AA818116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818116 /DB_XREF=gi:4198631 /DB_XREF=UI-R-A0-am-g-05-0-UI.s1 /CLONE=UI-R-A0-am-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.1280.1 /TIER=ConsEnd /STK=3 /UG=Rn.1280 /UG_TITLE=ESTs AA818116 1391287_at BF406905 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406905 /DB_XREF=gi:11394880 /DB_XREF=UI-R-BJ2-bps-d-12-0-UI.s1 /CLONE=UI-R-BJ2-bps-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.63670.1 /TIER=ConsEnd /STK=3 /UG=Rn.63670 /UG_TITLE=ESTs BF406905 1391288_at BF402388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402388 /DB_XREF=gi:11390363 /DB_XREF=UI-R-CA0-bhn-f-07-0-UI.s1 /CLONE=UI-R-CA0-bhn-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.60037.1 /TIER=ConsEnd /STK=3 /UG=Rn.60037 /UG_TITLE=ESTs BF402388 1391289_at AW532387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532387 /DB_XREF=gi:7174801 /DB_XREF=UI-R-BT1-akc-g-12-0-UI.s1 /CLONE=UI-R-BT1-akc-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.47947.1 /TIER=ConsEnd /STK=3 /UG=Rn.47947 /UG_TITLE=ESTs AW532387 1391290_at BF401802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401802 /DB_XREF=gi:11389777 /DB_XREF=UI-R-CA0-bgo-h-03-0-UI.s1 /CLONE=UI-R-CA0-bgo-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.51483.1 /TIER=ConsEnd /STK=3 /UG=Rn.51483 /UG_TITLE=ESTs BF401802 1391291_at BF410101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410101 /DB_XREF=gi:11398076 /DB_XREF=UI-R-CA1-bjt-e-08-0-UI.s1 /CLONE=UI-R-CA1-bjt-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.61576.1 /TIER=ConsEnd /STK=3 /UG=Rn.61576 /UG_TITLE=ESTs BF410101 1391292_at AI556811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556811 /DB_XREF=gi:4489174 /DB_XREF=UI-R-C2p-rm-g-10-0-UI.s1 /CLONE=UI-R-C2p-rm-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.38224.1 /TIER=ConsEnd /STK=3 /UG=Rn.38224 /UG_TITLE=ESTs AI556811 1391293_at AI170038 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170038 /DB_XREF=gi:3710078 /DB_XREF=EST215954 /CLONE=RLIAY88 /FEA=EST /CNT=3 /TID=Rn.16333.1 /TIER=ConsEnd /STK=3 /UG=Rn.16333 /UG_TITLE=ESTs AI170038 1391294_at AW527582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527582 /DB_XREF=gi:7169996 /DB_XREF=UI-R-BO1-ajv-h-08-0-UI.s1 /CLONE=UI-R-BO1-ajv-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.46208.1 /TIER=ConsEnd /STK=3 /UG=Rn.46208 /UG_TITLE=ESTs AW527582 Transmembrane and coiled-coil domain family 1 Tmcc1 312654 XM_001054467 /// XM_232287 1391295_at AI136393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136393 /DB_XREF=gi:3637170 /DB_XREF=UI-R-C2p-od-e-09-0-UI.s1 /CLONE=UI-R-C2p-od-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.27117.1 /TIER=ConsEnd /STK=3 /UG=Rn.27117 /UG_TITLE=ESTs AI136393 1391296_at BF405597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405597 /DB_XREF=gi:11393572 /DB_XREF=UI-R-CA1-bix-i-14-0-UI.s1 /CLONE=UI-R-CA1-bix-i-14-0-UI /FEA=EST /CNT=3 /TID=Rn.60795.1 /TIER=ConsEnd /STK=3 /UG=Rn.60795 /UG_TITLE=ESTs, Weakly similar to I48668 zinc finger protein 51 - mouse (M.musculus) BF405597 zinc finger protein 457-like /// similar to zinc finger protein 458 LOC100363969 /// LOC365723 100363969 /// 365723 XR_085746 /// XR_086165 1391297_at BI281108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281108 /DB_XREF=gi:14930517 /DB_XREF=UI-R-DD0-bzr-c-12-0-UI.s1 /CLONE=UI-R-DD0-bzr-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.79443.1 /TIER=ConsEnd /STK=3 /UG=Rn.79443 /UG_TITLE=ESTs, Weakly similar to metastasis associated 1 (Rattus norvegicus) (R.norvegicus) BI281108 REST corepressor 1-like LOC100363014 100363014 XM_002726790 /// XM_002729661 0045449 // regulation of transcription // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1391298_at BF416081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416081 /DB_XREF=gi:11404070 /DB_XREF=UI-R-CA0-bkq-a-08-0-UI.s1 /CLONE=UI-R-CA0-bkq-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.62916.1 /TIER=ConsEnd /STK=3 /UG=Rn.62916 /UG_TITLE=ESTs BF416081 1391299_at AW251367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251367 /DB_XREF=gi:6594958 /DB_XREF=UI-R-BJ0-adh-c-09-0-UI.s1 /CLONE=UI-R-BJ0-adh-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.40804.1 /TIER=ConsEnd /STK=3 /UG=Rn.40804 /UG_TITLE=ESTs AW251367 intersectin 2 Itsn2 313934 XM_001067254 /// XM_002730131 /// XM_002730132 /// XM_233945 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391300_at BE098582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098582 /DB_XREF=gi:8490446 /DB_XREF=UI-R-BJ1-asx-e-10-0-UI.s1 /CLONE=UI-R-BJ1-asx-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.12695.1 /TIER=ConsEnd /STK=3 /UG=Rn.12695 /UG_TITLE=ESTs BE098582 1391301_at AA997499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997499 /DB_XREF=gi:4284058 /DB_XREF=UI-R-C0-hw-e-12-0-UI.s1 /CLONE=UI-R-C0-hw-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.23215.1 /TIER=ConsEnd /STK=3 /UG=Rn.23215 /UG_TITLE=ESTs, Highly similar to 0506206A histone H2B (R.norvegicus) AA997499 histone cluster 1, H2bc /// histone cluster 1, H2bc-like 1 /// histone cluster 1, H2bm Hist1h2bc /// Hist1h2bcl1 /// Hist1h2bm 361247 /// 680312 /// 680403 NM_001108414 /// NM_001109400 /// XM_001057044 0006334 // nucleosome assembly // inferred from electronic annotation /// 0042742 // defense response to bacterium // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1391302_at BE098463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098463 /DB_XREF=gi:8490327 /DB_XREF=UI-R-BJ1-atc-c-06-0-UI.s1 /CLONE=UI-R-BJ1-atc-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.18203.1 /TIER=ConsEnd /STK=3 /UG=Rn.18203 /UG_TITLE=ESTs BE098463 1391303_at AI012338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012338 /DB_XREF=gi:3226170 /DB_XREF=EST206789 /CLONE=RPLAV90 /FEA=EST /CNT=3 /TID=Rn.18369.2 /TIER=ConsEnd /STK=3 /UG=Rn.18369 /UG_TITLE=ESTs, Moderately similar to PUR MOUSE TRANSCRIPTIONAL ACTIVATOR PROTEIN PUR-ALPHA (M.musculus) AI012338 purine rich element binding protein B Purb 498407 NM_001017503 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005662 // DNA replication factor A complex // inferred from sequence or structural similarity 0000900 // translation repressor activity, nucleic acid binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // not recorded /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003697 // single-stranded DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003729 // mRNA binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from sequence or structural similarity /// 0016566 // specific transcriptional repressor activity // inferred from direct assay /// 0032422 // purine-rich negative regulatory element binding // inferred from direct assay /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046332 // SMAD binding // not recorded 1391304_at BM388658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388658 /DB_XREF=gi:18188711 /DB_XREF=UI-R-DZ0-ckm-n-19-0-UI.s1 /CLONE=UI-R-DZ0-ckm-n-19-0-UI /FEA=EST /CNT=3 /TID=Rn.50635.1 /TIER=ConsEnd /STK=3 /UG=Rn.50635 /UG_TITLE=ESTs BM388658 similar to ubiquitin protein ligase E3 component n-recognin 2 LOC363188 363188 NM_001178071 /// XM_001061882 /// XM_002730019 0030163 // protein catabolic process // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1391305_at AI576233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576233 /DB_XREF=gi:4560609 /DB_XREF=UI-R-Y0-ux-f-09-0-UI.s1 /CLONE=UI-R-Y0-ux-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.39112.1 /TIER=ConsEnd /STK=3 /UG=Rn.39112 /UG_TITLE=ESTs AI576233 1391306_at AI070952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070952 /DB_XREF=gi:3397203 /DB_XREF=UI-R-C2-na-c-02-0-UI.s1 /CLONE=UI-R-C2-na-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.19894.1 /TIER=ConsEnd /STK=3 /UG=Rn.19894 /UG_TITLE=ESTs AI070952 1391307_at AW251406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251406 /DB_XREF=gi:6594997 /DB_XREF=UI-R-BJ0-adh-g-08-0-UI.s1 /CLONE=UI-R-BJ0-adh-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.44715.1 /TIER=ConsEnd /STK=3 /UG=Rn.44715 /UG_TITLE=ESTs, Moderately similar to ZPR1 MOUSE ZINC-FINGER PROTEIN ZPR1 (M.musculus) AW251406 zinc finger protein 259 Zfp259 500989 NM_001137646 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded 1391308_at AI101675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101675 /DB_XREF=gi:3706546 /DB_XREF=EST210964 /CLONE=RBRBT66 /FEA=EST /CNT=3 /TID=Rn.33730.1 /TIER=ConsEnd /STK=3 /UG=Rn.33730 /UG_TITLE=ESTs AI101675 1391309_at AI111970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111970 /DB_XREF=gi:3511919 /DB_XREF=UI-R-Y0-mo-d-10-0-UI.s1 /CLONE=UI-R-Y0-mo-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.23594.1 /TIER=ConsEnd /STK=3 /UG=Rn.23594 /UG_TITLE=ESTs AI111970 complement component 1, q subcomponent-like 3 C1ql3 680404 NM_001109403 0005515 // protein binding // not recorded 1391310_at AI555036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555036 /DB_XREF=gi:4487399 /DB_XREF=UI-R-C2p-qv-e-04-0-UI.s1 /CLONE=UI-R-C2p-qv-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.38655.1 /TIER=ConsEnd /STK=3 /UG=Rn.38655 /UG_TITLE=ESTs, Weakly similar to T19722 hypothetical protein C34E11.3 - Caenorhabditis elegans (C.elegans) AI555036 Similar to intracellular protein transport like (XM453) RGD1307525 308053 XM_001059656 /// XM_217724 0005515 // protein binding // not recorded 1391311_at AA965274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965274 /DB_XREF=gi:4280148 /DB_XREF=UI-R-C0-hd-c-10-0-UI.s1 /CLONE=UI-R-C0-hd-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.44876.1 /TIER=ConsEnd /STK=3 /UG=Rn.44876 /UG_TITLE=ESTs, Weakly similar to SX10 RAT TRANSCRIPTION FACTOR SOX-10 (R.norvegicus) AA965274 SRY (sex determining region Y)-box 21 Sox21 306168 XM_001078360 0006355 // regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded 1391312_at BE108090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108090 /DB_XREF=gi:8500195 /DB_XREF=UI-R-CA0-axa-c-09-0-UI.s1 /CLONE=UI-R-CA0-axa-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.51411.1 /TIER=ConsEnd /STK=3 /UG=Rn.51411 /UG_TITLE=ESTs, Moderately similar to T46372 hypothetical protein DKFZp434P1818.1 (H.sapiens) BE108090 inositol polyphosphate-5-phosphatase F Inpp5f 309008 NM_001107554 1391313_at AA818873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818873 /DB_XREF=gi:4227545 /DB_XREF=UI-R-A0-av-b-05-0-UI.s1 /CLONE=UI-R-A0-av-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.24065.1 /TIER=ConsEnd /STK=3 /UG=Rn.24065 /UG_TITLE=ESTs AA818873 1391314_at BF414224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414224 /DB_XREF=gi:11402213 /DB_XREF=UI-R-BJ2-bon-h-03-0-UI.s1 /CLONE=UI-R-BJ2-bon-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.44933.1 /TIER=ConsEnd /STK=3 /UG=Rn.44933 /UG_TITLE=ESTs, Weakly similar to A54849 collagen alpha 1(VII) chain precursor (H.sapiens) BF414224 1391315_at BM386843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386843 /DB_XREF=gi:18186896 /DB_XREF=UI-R-CN1-cjh-m-10-0-UI.s1 /CLONE=UI-R-CN1-cjh-m-10-0-UI /FEA=EST /CNT=3 /TID=Rn.76676.1 /TIER=ConsEnd /STK=3 /UG=Rn.76676 /UG_TITLE=ESTs BM386843 similar to mKIAA1450 protein RGD1562174 310538 XM_002725984 /// XM_227287 1391316_at AI072558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072558 /DB_XREF=gi:3398752 /DB_XREF=UI-R-C2-ni-g-06-0-UI.s1 /CLONE=UI-R-C2-ni-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.9184.1 /TIER=ConsEnd /STK=3 /UG=Rn.9184 /UG_TITLE=ESTs AI072558 1391317_at BE109802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109802 /DB_XREF=gi:8501907 /DB_XREF=UI-R-BJ1-aul-d-11-0-UI.s1 /CLONE=UI-R-BJ1-aul-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.22876.1 /TIER=ConsEnd /STK=3 /UG=Rn.22876 /UG_TITLE=ESTs BE109802 spindle and kinetochore associated complex subunit 1 Ska1 291441 NM_001106134 0000090 // mitotic anaphase // not recorded /// 0000090 // mitotic anaphase // inferred from sequence or structural similarity /// 0000090 // mitotic anaphase // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // not recorded /// 0007059 // chromosome segregation // inferred from sequence or structural similarity /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitosis // not recorded /// 0007067 // mitosis // inferred from sequence or structural similarity /// 0007067 // mitosis // inferred from electronic annotation /// 0031110 // regulation of microtubule polymerization or depolymerization // not recorded /// 0031110 // regulation of microtubule polymerization or depolymerization // inferred from sequence or structural similarity /// 0031110 // regulation of microtubule polymerization or depolymerization // inferred from electronic annotation /// 0051301 // cell division // not recorded /// 0051301 // cell division // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0000940 // condensed chromosome outer kinetochore // not recorded /// 0000940 // condensed chromosome outer kinetochore // inferred from sequence or structural similarity /// 0000940 // condensed chromosome outer kinetochore // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded /// 0005876 // spindle microtubule // inferred from sequence or structural similarity /// 0005876 // spindle microtubule // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // not recorded /// 0008017 // microtubule binding // inferred from sequence or structural similarity /// 0008017 // microtubule binding // inferred from electronic annotation 1391318_x_at AW252553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252553 /DB_XREF=gi:6596144 /DB_XREF=UI-R-BJ0-ada-h-03-0-UI.s1 /CLONE=UI-R-BJ0-ada-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.24985.1 /TIER=ConsEnd /STK=3 /UG=Rn.24985 /UG_TITLE=ESTs AW252553 ubiquitin specific peptidase 49 Usp49 316211 NM_001136470 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391319_at AA875153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875153 /DB_XREF=gi:4231034 /DB_XREF=UI-R-E0-ce-e-05-0-UI.s1 /CLONE=UI-R-E0-ce-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.32210.1 /TIER=ConsEnd /STK=3 /UG=Rn.32210 /UG_TITLE=ESTs AA875153 1391320_at BF393578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393578 /DB_XREF=gi:11378440 /DB_XREF=UI-R-CA0-bgd-e-06-0-UI.s1 /CLONE=UI-R-CA0-bgd-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.37915.1 /TIER=ConsEnd /STK=3 /UG=Rn.37915 /UG_TITLE=ESTs BF393578 1391321_at AI602685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602685 /DB_XREF=gi:4611846 /DB_XREF=UI-R-G0-ue-f-09-0-UI.s2 /CLONE=UI-R-G0-ue-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.41548.1 /TIER=ConsEnd /STK=3 /UG=Rn.41548 /UG_TITLE=ESTs, Weakly similar to TED_HUMAN TED PROTEIN (H.sapiens) AI602685 Family with sequence similarity 155, member A Fam155a 498667 XM_001076507 /// XM_573950 0005488 // binding // inferred from electronic annotation 1391322_at AW251649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251649 /DB_XREF=gi:6595240 /DB_XREF=UI-R-BJ0-adp-c-03-0-UI.s1 /CLONE=UI-R-BJ0-adp-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.44740.1 /TIER=ConsEnd /STK=3 /UG=Rn.44740 /UG_TITLE=ESTs AW251649 1391323_at AA945548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945548 /DB_XREF=gi:3105464 /DB_XREF=EST201047 /CLONE=RLIAO75 /FEA=EST /CNT=3 /TID=Rn.65663.1 /TIER=ConsEnd /STK=3 /UG=Rn.65663 /UG_TITLE=ESTs AA945548 transferrin Tf 24825 NM_001013110 0001666 // response to hypoxia // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006826 // iron ion transport // inferred from electronic annotation /// 0006826 // iron ion transport // not recorded /// 0006826 // iron ion transport // traceable author statement /// 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // traceable author statement /// 0006953 // acute-phase response // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0015682 // ferric iron transport // inferred from direct assay /// 0031643 // positive regulation of myelination // inferred from direct assay /// 0060395 // SMAD protein signal transduction // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005604 // basement membrane // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005770 // late endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0005905 // coated pit // not recorded /// 0009925 // basal plasma membrane // inferred from electronic annotation /// 0009925 // basal plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0030139 // endocytic vesicle // not recorded /// 0030141 // stored secretory granule // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0045178 // basal part of cell // not recorded /// 0045178 // basal part of cell // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0055037 // recycling endosome // inferred from electronic annotation /// 0055037 // recycling endosome // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0008199 // ferric iron binding // inferred from direct assay /// 0008199 // ferric iron binding // inferred from electronic annotation /// 0015091 // ferric iron transmembrane transporter activity // inferred from direct assay /// 0031625 // ubiquitin protein ligase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1391324_at BI293812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293812 /DB_XREF=gi:14955661 /DB_XREF=UI-R-DK0-cdl-b-07-0-UI.s1 /CLONE=UI-R-DK0-cdl-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.54259.1 /TIER=ConsEnd /STK=3 /UG=Rn.54259 /UG_TITLE=ESTs BI293812 dual specificity phosphatase 27 (putative) Dusp27 498267 NM_001191929 /// XM_001071732 /// XM_573493 0006470 // protein dephosphorylation // inferred from electronic annotation 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1391325_at BF397406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397406 /DB_XREF=gi:11382389 /DB_XREF=UI-R-BS2-bel-a-01-0-UI.s1 /CLONE=UI-R-BS2-bel-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.19162.1 /TIER=ConsEnd /STK=3 /UG=Rn.19162 /UG_TITLE=ESTs BF397406 1391326_at BE095733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095733 /DB_XREF=gi:8486664 /DB_XREF=UI-R-BU0-aoy-g-02-0-UI.s1 /CLONE=UI-R-BU0-aoy-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.47838.1 /TIER=ConsEnd /STK=3 /UG=Rn.47838 /UG_TITLE=ESTs BE095733 homeo box B5 Hoxb5 497987 NM_001191925 /// XM_001081293 /// XM_573183 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0045446 // endothelial cell differentiation // not recorded /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048706 // embryonic skeletal system development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1391327_at BF394271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394271 /DB_XREF=gi:11379135 /DB_XREF=UI-R-CA0-bgr-a-01-0-UI.s1 /CLONE=UI-R-CA0-bgr-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.64306.1 /TIER=ConsEnd /STK=3 /UG=Rn.64306 /UG_TITLE=ESTs BF394271 similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) /// similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) /// similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) /// similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) /// similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) LOC301193 /// LOC363434 /// LOC501251 /// LOC690665 /// LOC691569 301193 /// 363434 /// 501251 /// 690665 /// 691569 XM_001062005 /// XM_001078865 /// XM_002727321 /// XM_236873 /// XM_343756 /// XM_576670 1391328_at AI575783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575783 /DB_XREF=gi:4560159 /DB_XREF=UI-R-G0-ue-g-03-0-UI.s1 /CLONE=UI-R-G0-ue-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.81237.1 /TIER=ConsEnd /STK=3 /UG=Rn.81237 /UG_TITLE=ESTs AI575783 1391329_at BM387817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387817 /DB_XREF=gi:18187870 /DB_XREF=UI-R-CN1-cjk-m-08-0-UI.s1 /CLONE=UI-R-CN1-cjk-m-08-0-UI /FEA=EST /CNT=3 /TID=Rn.35506.1 /TIER=ConsEnd /STK=3 /UG=Rn.35506 /UG_TITLE=ESTs BM387817 1391330_at BE119385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119385 /DB_XREF=gi:8511490 /DB_XREF=UI-R-CA0-bah-h-11-0-UI.s1 /CLONE=UI-R-CA0-bah-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.50156.1 /TIER=ConsEnd /STK=3 /UG=Rn.50156 /UG_TITLE=ESTs, Weakly similar to T12545 hypothetical protein DKFZp434N074.1 (H.sapiens) BE119385 ankyrin repeat and SOCS box-containing 14 Asb14 680076 NM_001170749 /// XM_001055574 /// XM_002725146 /// XM_002725147 /// XM_002728369 0007018 // microtubule-based movement // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0030286 // dynein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation 1391331_at BE106891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106891 /DB_XREF=gi:8498993 /DB_XREF=UI-R-BT1-asu-d-06-0-UI.s1 /CLONE=UI-R-BT1-asu-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.45499.1 /TIER=ConsEnd /STK=3 /UG=Rn.45499 /UG_TITLE=ESTs BE106891 1391332_at BF403055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403055 /DB_XREF=gi:11391030 /DB_XREF=UI-R-CA0-biy-b-12-0-UI.s1 /CLONE=UI-R-CA0-biy-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.59178.1 /TIER=ConsEnd /STK=3 /UG=Rn.59178 /UG_TITLE=ESTs BF403055 polymerase (DNA directed) nu Poln 498396 XR_085614 /// XR_086013 1391333_at AI602218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602218 /DB_XREF=gi:4611379 /DB_XREF=UI-R-AB0-vy-h-01-0-UI.s2 /CLONE=UI-R-AB0-vy-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.20528.1 /TIER=ConsEnd /STK=3 /UG=Rn.20528 /UG_TITLE=ESTs AI602218 Leucine rich repeat (in FLII) interacting protein 2 Lrrfip2 301035 NM_001024761 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030275 // LRR domain binding // inferred from electronic annotation /// 0030275 // LRR domain binding // not recorded 1391334_at BE106273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106273 /DB_XREF=gi:8498375 /DB_XREF=UI-R-BO1-asm-a-08-0-UI.s1 /CLONE=UI-R-BO1-asm-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.45192.1 /TIER=ConsEnd /STK=3 /UG=Rn.45192 /UG_TITLE=ESTs BE106273 1391335_at BE113183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113183 /DB_XREF=gi:8505288 /DB_XREF=UI-R-BJ1-awc-e-02-0-UI.s1 /CLONE=UI-R-BJ1-awc-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.23253.1 /TIER=ConsEnd /STK=3 /UG=Rn.23253 /UG_TITLE=ESTs BE113183 1391336_at AI763749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763749 /DB_XREF=gi:5209684 /DB_XREF=UI-R-Y0-acn-f-01-0-UI.s1 /CLONE=UI-R-Y0-acn-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.12800.1 /TIER=ConsEnd /STK=3 /UG=Rn.12800 /UG_TITLE=ESTs AI763749 1391337_at BE116623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116623 /DB_XREF=gi:8508728 /DB_XREF=UI-R-BS1-ayd-d-06-0-UI.s1 /CLONE=UI-R-BS1-ayd-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.50062.1 /TIER=ConsEnd /STK=3 /UG=Rn.50062 /UG_TITLE=ESTs BE116623 1391338_at AI603449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI603449 /DB_XREF=gi:4612610 /DB_XREF=UI-R-AC1-xu-e-03-0-UI.s1 /CLONE=UI-R-AC1-xu-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.44722.1 /TIER=ConsEnd /STK=3 /UG=Rn.44722 /UG_TITLE=ESTs AI603449 EP300 interacting inhibitor of differentiation 2B Eid2b 499112 XM_002725600 /// XM_574407 1391339_at BI304052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI304052 /DB_XREF=gi:14980332 /DB_XREF=UI-R-DR0-cjc-k-16-0-UI.s1 /CLONE=UI-R-DR0-cjc-k-16-0-UI /FEA=EST /CNT=3 /TID=Rn.44071.1 /TIER=ConsEnd /STK=3 /UG=Rn.44071 /UG_TITLE=ESTs BI304052 1391340_at AW435054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435054 /DB_XREF=gi:6966361 /DB_XREF=UI-R-BJ0p-afy-a-12-0-UI.s1 /CLONE=UI-R-BJ0p-afy-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.35605.1 /TIER=ConsEnd /STK=3 /UG=Rn.35605 /UG_TITLE=ESTs, Highly similar to RalBP1 associated Eps domain containing protein (Mus musculus) (M.musculus) AW435054 RALBP1 associated Eps domain containing 1 Reps1 292944 NM_001106264 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391341_at BM389038 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389038 /DB_XREF=gi:18189091 /DB_XREF=UI-R-DZ0-cko-d-21-0-UI.s1 /CLONE=UI-R-DZ0-cko-d-21-0-UI /FEA=EST /CNT=3 /TID=Rn.18110.1 /TIER=ConsEnd /STK=3 /UG=Rn.18110 /UG_TITLE=ESTs BM389038 plexin domain containing 1 Plxdc1 303505 NM_001107046 0021510 // spinal cord development // inferred from expression pattern 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 1391342_at AI058512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058512 /DB_XREF=gi:3332289 /DB_XREF=UI-R-C1-kv-e-06-0-UI.s1 /CLONE=UI-R-C1-kv-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.18897.1 /TIER=ConsEnd /STK=3 /UG=Rn.18897 /UG_TITLE=ESTs AI058512 1391343_at BF396067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396067 /DB_XREF=gi:11381039 /DB_XREF=UI-R-BS2-bdu-h-11-0-UI.s1 /CLONE=UI-R-BS2-bdu-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.25534.1 /TIER=ConsEnd /STK=3 /UG=Rn.25534 /UG_TITLE=ESTs BF396067 1391344_at AW527134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527134 /DB_XREF=gi:7169548 /DB_XREF=UI-R-BO1-ajh-h-09-0-UI.s1 /CLONE=UI-R-BO1-ajh-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.46430.1 /TIER=ConsEnd /STK=3 /UG=Rn.46430 /UG_TITLE=ESTs AW527134 1391345_at BI293047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293047 /DB_XREF=gi:14954167 /DB_XREF=UI-R-DK0-cdj-f-12-0-UI.s1 /CLONE=UI-R-DK0-cdj-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.62611.1 /TIER=ConsEnd /STK=3 /UG=Rn.62611 /UG_TITLE=ESTs BI293047 BMP-binding endothelial regulator Bmper 300455 NM_001135799 0001657 // ureteric bud development // not recorded /// 0002043 // blood vessel endothelial cell proliferation involved in sprouting angiogenesis // not recorded /// 0010594 // regulation of endothelial cell migration // not recorded /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0042118 // endothelial cell activation // not recorded /// 0060393 // regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // not recorded 0005515 // protein binding // not recorded 1391346_at BG373537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373537 /DB_XREF=gi:13270074 /DB_XREF=UI-R-CV1-bse-a-02-0-UI.s1 /CLONE=UI-R-CV1-bse-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.43107.1 /TIER=ConsEnd /STK=3 /UG=Rn.43107 /UG_TITLE=ESTs BG373537 Transcription factor 25 (basic helix-loop-helix) Tcf25 292082 XM_001079503 /// XM_214707 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391347_at BF398743 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398743 /DB_XREF=gi:11383784 /DB_XREF=UI-R-BS2-bes-g-11-0-UI.s1 /CLONE=UI-R-BS2-bes-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.59159.1 /TIER=ConsEnd /STK=3 /UG=Rn.59159 /UG_TITLE=ESTs BF398743 RAB8B, member RAS oncogene family Rab8b 266688 NM_153317 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0031346 // positive regulation of cell projection organization // inferred from direct assay /// 0051461 // positive regulation of adrenocorticotropin secretion // inferred from direct assay 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0051286 // cell tip // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0030911 // TPR domain binding // inferred from physical interaction 1391348_at BI296886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296886 /DB_XREF=gi:14961757 /DB_XREF=UI-R-DK0-cgg-g-01-0-UI.s1 /CLONE=UI-R-DK0-cgg-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.69025.1 /TIER=ConsEnd /STK=3 /UG=Rn.69025 /UG_TITLE=ESTs BI296886 pantothenate kinase 3 Pank3 360511 NM_001108272 0015937 // coenzyme A biosynthetic process // inferred from electronic annotation 0004594 // pantothenate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1391349_at BG375114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375114 /DB_XREF=gi:13299586 /DB_XREF=UI-R-CV1-bsx-c-07-0-UI.s1 /CLONE=UI-R-CV1-bsx-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.73067.1 /TIER=ConsEnd /STK=3 /UG=Rn.73067 /UG_TITLE=ESTs BG375114 seryl-tRNA synthetase Sars 266975 NM_001007606 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006434 // seryl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004828 // serine-tRNA ligase activity // inferred from electronic annotation /// 0004828 // serine-tRNA ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1391350_at BI300243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300243 /DB_XREF=gi:14976523 /DB_XREF=UI-R-CV2-cic-f-06-0-UI.s1 /CLONE=UI-R-CV2-cic-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.76790.1 /TIER=ConsEnd /STK=3 /UG=Rn.76790 /UG_TITLE=ESTs, Moderately similar to H2AY_RAT CORE HISTONE MACRO-H2A.1 (HISTONE MACROH2A1) (MH2A1) (H2A.Y) (H2AY) (R.norvegicus) BI300243 H2A histone family, member Y2 H2afy2 361844 NM_001135807 0006334 // nucleosome assembly // inferred from electronic annotation /// 0007549 // dosage compensation // inferred from electronic annotation /// 0007549 // dosage compensation // not recorded 0000786 // nucleosome // inferred from electronic annotation /// 0001740 // Barr body // inferred from electronic annotation /// 0001740 // Barr body // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1391351_at AI556000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556000 /DB_XREF=gi:4488363 /DB_XREF=UI-R-C2p-qz-a-12-0-UI.s1 /CLONE=UI-R-C2p-qz-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.63668.1 /TIER=ConsEnd /STK=3 /UG=Rn.63668 /UG_TITLE=ESTs, Weakly similar to T26720 hypothetical protein Y45F10A.6 - Caenorhabditis elegans (C.elegans) AI556000 Similar to TBC1 domain family, member 8 LOC680133 680133 NM_001191067 /// XM_001055799 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1391352_at BF407548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407548 /DB_XREF=gi:11395523 /DB_XREF=UI-R-BJ2-bqt-e-11-0-UI.s1 /CLONE=UI-R-BJ2-bqt-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.16083.1 /TIER=ConsEnd /STK=3 /UG=Rn.16083 /UG_TITLE=ESTs, Weakly similar to PDI RAT PROTEIN DISULFIDE ISOMERASE PRECURSOR (R.norvegicus) BF407548 endoplasmic reticulum protein 27 Erp27 297698 NM_001106625 0005783 // endoplasmic reticulum // inferred from electronic annotation 1391353_at AI044121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044121 /DB_XREF=gi:3291024 /DB_XREF=UI-R-C1-jv-f-06-0-UI.s1 /CLONE=UI-R-C1-jv-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.13277.1 /TIER=ConsEnd /STK=3 /UG=Rn.13277 /UG_TITLE=ESTs AI044121 1391354_at BF387447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387447 /DB_XREF=gi:11372271 /DB_XREF=UI-R-CA1-bbm-e-09-0-UI.s1 /CLONE=UI-R-CA1-bbm-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.59366.1 /TIER=ConsEnd /STK=3 /UG=Rn.59366 /UG_TITLE=ESTs BF387447 1391355_at AW531049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531049 /DB_XREF=gi:7173463 /DB_XREF=UI-R-C4-alg-a-10-0-UI.s1 /CLONE=UI-R-C4-alg-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.64847.1 /TIER=ConsEnd /STK=3 /UG=Rn.64847 /UG_TITLE=ESTs, Moderately similar to proto-oncogene FYN (R.norvegicus) AW531049 hypothetical protein LOC679824 LOC679824 679824 XR_085739 /// XR_086155 1391356_at BI282688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282688 /DB_XREF=gi:14933710 /DB_XREF=UI-R-CW0s-cce-a-07-0-UI.s1 /CLONE=UI-R-CW0s-cce-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.52943.1 /TIER=ConsEnd /STK=3 /UG=Rn.52943 /UG_TITLE=ESTs, Weakly similar to F13B12.1.p (Caenorhabditis elegans) (C.elegans) BI282688 IWS1 homolog (S. cerevisiae) Iws1 291705 NM_001034918 0006350 // transcription // inferred from electronic annotation /// 0006354 // RNA elongation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1391357_at BF410388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410388 /DB_XREF=gi:11398363 /DB_XREF=UI-R-CA1-bjw-h-08-0-UI.s1 /CLONE=UI-R-CA1-bjw-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.53764.1 /TIER=ConsEnd /STK=3 /UG=Rn.53764 /UG_TITLE=ESTs BF410388 1391358_at BF392781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392781 /DB_XREF=gi:11377639 /DB_XREF=UI-R-CA0-bfo-b-09-0-UI.s1 /CLONE=UI-R-CA0-bfo-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.58310.1 /TIER=ConsEnd /STK=3 /UG=Rn.58310 /UG_TITLE=ESTs BF392781 1391359_at BE113549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113549 /DB_XREF=gi:8505654 /DB_XREF=UI-R-CA0-axq-f-03-0-UI.s1 /CLONE=UI-R-CA0-axq-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.59215.1 /TIER=ConsEnd /STK=3 /UG=Rn.59215 /UG_TITLE=ESTs BE113549 1391360_x_at BF393107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393107 /DB_XREF=gi:11377967 /DB_XREF=UI-R-CA0-bgu-g-03-0-UI.s1 /CLONE=UI-R-CA0-bgu-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.61344.1 /TIER=ConsEnd /STK=3 /UG=Rn.61344 /UG_TITLE=ESTs BF393107 1391361_at BF411568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411568 /DB_XREF=gi:11399557 /DB_XREF=UI-R-BT1-bmt-f-12-0-UI.s1 /CLONE=UI-R-BT1-bmt-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.61873.1 /TIER=ConsEnd /STK=3 /UG=Rn.61873 /UG_TITLE=ESTs BF411568 1391362_at BF405612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405612 /DB_XREF=gi:11393587 /DB_XREF=UI-R-CA1-bix-k-22-0-UI.s1 /CLONE=UI-R-CA1-bix-k-22-0-UI /FEA=EST /CNT=3 /TID=Rn.62805.1 /TIER=ConsEnd /STK=3 /UG=Rn.62805 /UG_TITLE=ESTs BF405612 1391363_at BF404844 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404844 /DB_XREF=gi:11392819 /DB_XREF=UI-R-CA1-bic-d-04-0-UI.s1 /CLONE=UI-R-CA1-bic-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.62917.1 /TIER=ConsEnd /STK=3 /UG=Rn.62917 /UG_TITLE=ESTs BF404844 1391364_at BF400979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400979 /DB_XREF=gi:11388954 /DB_XREF=UI-R-CA0-bgi-b-06-0-UI.s1 /CLONE=UI-R-CA0-bgi-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.63072.1 /TIER=ConsEnd /STK=3 /UG=Rn.63072 /UG_TITLE=ESTs BF400979 1391365_at BF416465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416465 /DB_XREF=gi:11404454 /DB_XREF=UI-R-CA0-bks-h-09-0-UI.s1 /CLONE=UI-R-CA0-bks-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.63303.1 /TIER=ConsEnd /STK=3 /UG=Rn.63303 /UG_TITLE=ESTs BF416465 1391366_at BF419435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419435 /DB_XREF=gi:11407424 /DB_XREF=UI-R-CA1-bnr-f-05-0-UI.s1 /CLONE=UI-R-CA1-bnr-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.63513.1 /TIER=ConsEnd /STK=3 /UG=Rn.63513 /UG_TITLE=ESTs, Weakly similar to T29974 hypothetical protein F11G11.7 - Caenorhabditis elegans (C.elegans) BF419435 DnaJ (Hsp40) homolog, subfamily C, member 11 Dnajc11 362666 NM_001108694 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded 0031072 // heat shock protein binding // inferred from electronic annotation 1391367_at BF419542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419542 /DB_XREF=gi:11407531 /DB_XREF=UI-R-CA0-bpd-b-11-0-UI.s1 /CLONE=UI-R-CA0-bpd-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.63640.1 /TIER=ConsEnd /STK=3 /UG=Rn.63640 /UG_TITLE=ESTs BF419542 1391368_at BE097384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097384 /DB_XREF=gi:8488315 /DB_XREF=UI-R-BO1-apq-g-11-0-UI.s1 /CLONE=UI-R-BO1-apq-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.64912.1 /TIER=ConsEnd /STK=3 /UG=Rn.64912 /UG_TITLE=ESTs BE097384 eukaryotic translation initiation factor 4 gamma, 3-like LOC100363114 100363114 XM_002729557 1391369_at BE095798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095798 /DB_XREF=gi:8486729 /DB_XREF=UI-R-BU0-aoz-e-09-0-UI.s1 /CLONE=UI-R-BU0-aoz-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.44898.1 /TIER=ConsEnd /STK=3 /UG=Rn.44898 /UG_TITLE=ESTs, Highly similar to VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV3.4 (R.norvegicus) BE095798 Potassium voltage gated channel, Shaw-related subfamily, member 4 Kcnc4 684516 NM_001122776 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1391370_at AW532474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532474 /DB_XREF=gi:7174888 /DB_XREF=UI-R-BS0-ami-b-01-0-UI.s1 /CLONE=UI-R-BS0-ami-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.47872.1 /TIER=ConsEnd /STK=3 /UG=Rn.47872 /UG_TITLE=ESTs AW532474 1391371_at BE113304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113304 /DB_XREF=gi:8505449 /DB_XREF=UI-R-BJ1-awe-c-07-0-UI.s1 /CLONE=UI-R-BJ1-awe-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.49786.1 /TIER=ConsEnd /STK=3 /UG=Rn.49786 /LL=29281 /UG_GENE=Prodh /UG_TITLE=proline dehydrogenase BE113304 Proline dehydrogenase Prodh 680409 NM_001135778 0006537 // glutamate biosynthetic process // inferred from electronic annotation /// 0006562 // proline catabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation 0004657 // proline dehydrogenase activity // inferred from mutant phenotype /// 0004657 // proline dehydrogenase activity // not recorded /// 0004657 // proline dehydrogenase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from mutant phenotype 1391372_at BF405555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405555 /DB_XREF=gi:11393530 /DB_XREF=UI-R-CA1-bix-c-02-0-UI.s1 /CLONE=UI-R-CA1-bix-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.50197.1 /TIER=ConsEnd /STK=3 /UG=Rn.50197 /UG_TITLE=ESTs BF405555 1391373_at BF391714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391714 /DB_XREF=gi:11376568 /DB_XREF=UI-R-CA1-bct-f-01-0-UI.s1 /CLONE=UI-R-CA1-bct-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.57605.1 /TIER=ConsEnd /STK=3 /UG=Rn.57605 /UG_TITLE=ESTs BF391714 1391374_at BE106930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106930 /DB_XREF=gi:8499032 /DB_XREF=UI-R-BT1-asu-g-12-0-UI.s1 /CLONE=UI-R-BT1-asu-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.58838.1 /TIER=ConsEnd /STK=3 /UG=Rn.58838 /UG_TITLE=ESTs BE106930 transforming, acidic coiled-coil containing protein 3 Tacc3 360962 NM_001004424 0000226 // microtubule cytoskeleton organization // not recorded /// 0006950 // response to stress // not recorded /// 0008283 // cell proliferation // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0022008 // neurogenesis // not recorded /// 0022027 // interkinetic nuclear migration // not recorded /// 0030097 // hemopoiesis // not recorded /// 0030953 // spindle astral microtubule organization // not recorded /// 0032886 // regulation of microtubule-based process // not recorded /// 0042994 // cytoplasmic sequestering of transcription factor // not recorded /// 0051726 // regulation of cell cycle // not recorded 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // not recorded 0019904 // protein domain specific binding // not recorded 1391375_at BF399581 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399581 /DB_XREF=gi:11384589 /DB_XREF=UI-R-CA0-bht-e-06-0-UI.s2 /CLONE=UI-R-CA0-bht-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.59266.1 /TIER=ConsEnd /STK=3 /UG=Rn.59266 /UG_TITLE=ESTs BF399581 1391376_at BF405737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405737 /DB_XREF=gi:11393712 /DB_XREF=UI-R-CA1-bje-e-13-0-UI.s1 /CLONE=UI-R-CA1-bje-e-13-0-UI /FEA=EST /CNT=3 /TID=Rn.60198.1 /TIER=ConsEnd /STK=3 /UG=Rn.60198 /UG_TITLE=ESTs BF405737 1391377_at BM387935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387935 /DB_XREF=gi:18187988 /DB_XREF=UI-R-CN1-cjk-f-10-0-UI.s1 /CLONE=UI-R-CN1-cjk-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.61103.1 /TIER=ConsEnd /STK=3 /UG=Rn.61103 /UG_TITLE=ESTs BM387935 1391378_at BF418338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418338 /DB_XREF=gi:11406327 /DB_XREF=UI-R-CA0-bmd-h-07-0-UI.s1 /CLONE=UI-R-CA0-bmd-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.62739.1 /TIER=ConsEnd /STK=3 /UG=Rn.62739 /UG_TITLE=ESTs BF418338 1391379_at BF400852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400852 /DB_XREF=gi:11388792 /DB_XREF=UI-R-CA0-bhg-a-03-0-UI.s1 /CLONE=UI-R-CA0-bhg-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.64365.1 /TIER=ConsEnd /STK=3 /UG=Rn.64365 /UG_TITLE=ESTs BF400852 1391380_at BF411847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411847 /DB_XREF=gi:11399836 /DB_XREF=UI-R-BT1-bmr-a-03-0-UI.s1 /CLONE=UI-R-BT1-bmr-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.50134.1 /TIER=ConsEnd /STK=3 /UG=Rn.50134 /UG_TITLE=ESTs, Highly similar to T43444 hypothetical protein DKFZp434C1715.1 (H.sapiens) BF411847 1391381_at BF410362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410362 /DB_XREF=gi:11398332 /DB_XREF=UI-R-CA1-bjw-e-08-0-UI.s1 /CLONE=UI-R-CA1-bjw-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.63643.1 /TIER=ConsEnd /STK=3 /UG=Rn.63643 /UG_TITLE=ESTs BF410362 1391382_at BF402496 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402496 /DB_XREF=gi:11390471 /DB_XREF=UI-R-CA0-bhr-a-09-0-UI.s1 /CLONE=UI-R-CA0-bhr-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.60058.1 /TIER=ConsEnd /STK=3 /UG=Rn.60058 /UG_TITLE=ESTs BF402496 1391383_at BF413778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413778 /DB_XREF=gi:11401767 /DB_XREF=UI-R-CA0-boi-d-12-0-UI.s1 /CLONE=UI-R-CA0-boi-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.62455.1 /TIER=ConsEnd /STK=3 /UG=Rn.62455 /UG_TITLE=ESTs BF413778 cartilage acidic protein 1 Crtac1 171438 NM_134401 0005509 // calcium ion binding // inferred from electronic annotation 1391384_at AA819227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819227 /DB_XREF=gi:4227888 /DB_XREF=UI-R-A0-al-h-03-0-UI.s2 /CLONE=UI-R-A0-al-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.81181.1 /TIER=ConsEnd /STK=3 /UG=Rn.81181 /UG_TITLE=ESTs AA819227 tumor necrosis factor (TNF superfamily, member 2) Tnf 24835 NM_012675 0000060 // protein import into nucleus, translocation // inferred from electronic annotation /// 0000060 // protein import into nucleus, translocation // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001775 // cell activation // inferred from direct assay /// 0001819 // positive regulation of cytokine production // not recorded /// 0001819 // positive regulation of cytokine production // inferred from electronic annotation /// 0001932 // regulation of protein phosphorylation // not recorded /// 0001932 // regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0002037 // negative regulation of L-glutamate transport // inferred from direct assay /// 0002439 // chronic inflammatory response to antigenic stimulus // not recorded /// 0002439 // chronic inflammatory response to antigenic stimulus // inferred from electronic annotation /// 0002740 // negative regulation of cytokine secretion involved in immune response // inferred from electronic annotation /// 0002740 // negative regulation of cytokine secretion involved in immune response // not recorded /// 0002876 // positive regulation of chronic inflammatory response to antigenic stimulus // inferred from electronic annotation /// 0002876 // positive regulation of chronic inflammatory response to antigenic stimulus // not recorded /// 0002925 // positive regulation of humoral immune response mediated by circulating immunoglobulin // inferred from electronic annotation /// 0002925 // positive regulation of humoral immune response mediated by circulating immunoglobulin // not recorded /// 0003009 // skeletal muscle contraction // inferred from expression pattern /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006915 // apoptosis // inferred from direct assay /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from direct assay /// 0006917 // induction of apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0006927 // transformed cell apoptosis // inferred from electronic annotation /// 0006927 // transformed cell apoptosis // not recorded /// 0006952 // defense response // not recorded /// 0006952 // defense response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0006954 // inflammatory response // traceable author statement /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0006959 // humoral immune response // inferred from electronic annotation /// 0006959 // humoral immune response // not recorded /// 0007165 // signal transduction // inferred from direct assay /// 0007254 // JNK cascade // not recorded /// 0007254 // JNK cascade // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007275 // multicellular organismal development // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0008624 // induction of apoptosis by extracellular signals // inferred from electronic annotation /// 0008625 // induction of apoptosis via death domain receptors // inferred from electronic annotation /// 0008625 // induction of apoptosis via death domain receptors // not recorded /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009615 // response to virus // inferred from electronic annotation /// 0009615 // response to virus // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0014823 // response to activity // inferred from expression pattern /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // inferred from direct assay /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030316 // osteoclast differentiation // not recorded /// 0030316 // osteoclast differentiation // inferred from electronic annotation /// 0030730 // sequestering of triglyceride // inferred from electronic annotation /// 0030730 // sequestering of triglyceride // not recorded /// 0031622 // positive regulation of fever // not recorded /// 0032582 // negative regulation of gene-specific transcription // inferred from electronic annotation /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0032715 // negative regulation of interleukin-6 production // inferred from electronic annotation /// 0032715 // negative regulation of interleukin-6 production // not recorded /// 0032722 // positive regulation of chemokine production // inferred from electronic annotation /// 0032722 // positive regulation of chemokine production // not recorded /// 0032729 // positive regulation of interferon-gamma production // inferred from electronic annotation /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0032741 // positive regulation of interleukin-18 production // inferred from mutant phenotype /// 0032755 // positive regulation of interleukin-6 production // inferred from electronic annotation /// 0032755 // positive regulation of interleukin-6 production // not recorded /// 0032800 // receptor biosynthetic process // inferred from electronic annotation /// 0032800 // receptor biosynthetic process // not recorded /// 0033209 // tumor necrosis factor-mediated signaling pathway // inferred from electronic annotation /// 0033209 // tumor necrosis factor-mediated signaling pathway // not recorded /// 0034116 // positive regulation of heterotypic cell-cell adhesion // inferred from electronic annotation /// 0034116 // positive regulation of heterotypic cell-cell adhesion // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042346 // positive regulation of NF-kappaB import into nucleus // inferred from electronic annotation /// 0042346 // positive regulation of NF-kappaB import into nucleus // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042742 // defense response to bacterium // not recorded /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043122 // regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043122 // regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from genetic interaction /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0044130 // negative regulation of growth of symbiont in host // inferred from electronic annotation /// 0044130 // negative regulation of growth of symbiont in host // not recorded /// 0045071 // negative regulation of viral genome replication // inferred from electronic annotation /// 0045071 // negative regulation of viral genome replication // not recorded /// 0045080 // positive regulation of chemokine biosynthetic process // inferred from electronic annotation /// 0045080 // positive regulation of chemokine biosynthetic process // not recorded /// 0045123 // cellular extravasation // not recorded /// 0045123 // cellular extravasation // inferred from electronic annotation /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045429 // positive regulation of nitric oxide biosynthetic process // not recorded /// 0045670 // regulation of osteoclast differentiation // inferred from electronic annotation /// 0045670 // regulation of osteoclast differentiation // not recorded /// 0045840 // positive regulation of mitosis // inferred from mutant phenotype /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045994 // positive regulation of translational initiation by iron // inferred from electronic annotation /// 0045994 // positive regulation of translational initiation by iron // not recorded /// 0046325 // negative regulation of glucose import // inferred from direct assay /// 0046325 // negative regulation of glucose import // not recorded /// 0046325 // negative regulation of glucose import // inferred from electronic annotation /// 0046330 // positive regulation of JNK cascade // inferred from electronic annotation /// 0046330 // positive regulation of JNK cascade // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048661 // positive regulation of smooth muscle cell proliferation // not recorded /// 0050715 // positive regulation of cytokine secretion // inferred from electronic annotation /// 0050715 // positive regulation of cytokine secretion // not recorded /// 0050729 // positive regulation of inflammatory response // inferred from mutant phenotype /// 0050796 // regulation of insulin secretion // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // not recorded /// 0050806 // positive regulation of synaptic transmission // inferred from mutant phenotype /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // not recorded /// 0050900 // leukocyte migration // not recorded /// 0050900 // leukocyte migration // inferred from electronic annotation /// 0050901 // leukocyte tethering or rolling // inferred from electronic annotation /// 0050901 // leukocyte tethering or rolling // not recorded /// 0050995 // negative regulation of lipid catabolic process // inferred from electronic annotation /// 0050995 // negative regulation of lipid catabolic process // not recorded /// 0051023 // regulation of immunoglobulin secretion // inferred from electronic annotation /// 0051023 // regulation of immunoglobulin secretion // not recorded /// 0051044 // positive regulation of membrane protein ectodomain proteolysis // inferred from electronic annotation /// 0051044 // positive regulation of membrane protein ectodomain proteolysis // not recorded /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0051091 // positive regulation of transcription factor activity // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051222 // positive regulation of protein transport // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // not recorded /// 0051798 // positive regulation of hair follicle development // inferred from electronic annotation /// 0051798 // positive regulation of hair follicle development // not recorded /// 0060555 // induction of necroptosis by extracellular signals // inferred from electronic annotation /// 0060555 // induction of necroptosis by extracellular signals // not recorded /// 0060557 // positive regulation of vitamin D biosynthetic process // inferred from electronic annotation /// 0060557 // positive regulation of vitamin D biosynthetic process // not recorded /// 0060559 // positive regulation of calcidiol 1-monooxygenase activity // inferred from electronic annotation /// 0060559 // positive regulation of calcidiol 1-monooxygenase activity // not recorded /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // not recorded /// 0060693 // regulation of branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060693 // regulation of branching involved in salivary gland morphogenesis // not recorded /// 0061048 // negative regulation of branching involved in lung morphogenesis // inferred from electronic annotation /// 0061048 // negative regulation of branching involved in lung morphogenesis // not recorded /// 0070265 // necrotic cell death // inferred from electronic annotation /// 0070265 // necrotic cell death // not recorded 0001891 // phagocytic cup // inferred from electronic annotation /// 0001891 // phagocytic cup // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded /// 0055037 // recycling endosome // inferred from electronic annotation /// 0055037 // recycling endosome // not recorded 0005125 // cytokine activity // not recorded /// 0005125 // cytokine activity // traceable author statement /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005164 // tumor necrosis factor receptor binding // inferred from direct assay /// 0005164 // tumor necrosis factor receptor binding // not recorded /// 0005164 // tumor necrosis factor receptor binding // traceable author statement /// 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1391385_at AW535948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535948 /DB_XREF=gi:7178362 /DB_XREF=UI-R-C4-amb-c-10-0-UI.s1 /CLONE=UI-R-C4-amb-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.48652.1 /TIER=ConsEnd /STK=3 /UG=Rn.48652 /UG_TITLE=ESTs, Weakly similar to ROA1 RAT HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1 (R.norvegicus) AW535948 1391386_at AI412693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412693 /DB_XREF=gi:4256197 /DB_XREF=EST240992 /CLONE=RBRDR31 /FEA=EST /CNT=3 /TID=Rn.43465.1 /TIER=ConsEnd /STK=3 /UG=Rn.43465 /UG_TITLE=ESTs AI412693 Chimerin (chimaerin) 1 Chn1 84030 NM_032083 0007165 // signal transduction // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0001565 // phorbol ester receptor activity // traceable author statement /// 0005096 // GTPase activator activity // traceable author statement /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391387_s_at AI072956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072956 /DB_XREF=gi:3399150 /DB_XREF=UI-R-Y0-ly-b-10-0-UI.s1 /CLONE=UI-R-Y0-ly-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.20311.1 /TIER=ConsEnd /STK=3 /UG=Rn.20311 /UG_TITLE=ESTs AI072956 stem-loop binding protein Slbp 681062 NM_001130988 0033260 // DNA replication involved in S phase // not recorded /// 0033261 // regulation of S phase // not recorded /// 0051028 // mRNA transport // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // not recorded 0003729 // mRNA binding // not recorded /// 0005515 // protein binding // not recorded 1391388_at BF403622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403622 /DB_XREF=gi:11391597 /DB_XREF=UI-R-CA1-bjd-n-04-0-UI.s1 /CLONE=UI-R-CA1-bjd-n-04-0-UI /FEA=EST /CNT=3 /TID=Rn.35214.1 /TIER=ConsEnd /STK=3 /UG=Rn.35214 /UG_TITLE=ESTs BF403622 Similar to RIKEN cDNA D930015E06 LOC679811 679811 XM_001054550 /// XM_002725985 1391389_at BF412451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412451 /DB_XREF=gi:11400440 /DB_XREF=UI-R-BT1-bnd-e-03-0-UI.s1 /CLONE=UI-R-BT1-bnd-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.62691.1 /TIER=ConsEnd /STK=3 /UG=Rn.62691 /UG_TITLE=ESTs BF412451 1391390_at AA894192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894192 /DB_XREF=gi:3021071 /DB_XREF=EST197995 /CLONE=RSPAS40 /FEA=EST /CNT=3 /TID=Rn.38836.1 /TIER=ConsEnd /STK=3 /UG=Rn.38836 /UG_TITLE=ESTs AA894192 Tensin 1 Tns1 301509 NM_001191810 /// XM_002727232 /// XM_237286 0005515 // protein binding // inferred from electronic annotation 1391391_at BG372432 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372432 /DB_XREF=gi:13268969 /DB_XREF=UI-R-CV1-bsc-f-08-0-UI.s1 /CLONE=UI-R-CV1-bsc-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.66917.1 /TIER=ConsEnd /STK=3 /UG=Rn.66917 /UG_TITLE=ESTs BG372432 1391392_at AW521487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521487 /DB_XREF=gi:7163912 /DB_XREF=UI-R-BO0-agn-f-07-0-UI.s1 /CLONE=UI-R-BO0-agn-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.45191.1 /TIER=ConsEnd /STK=3 /UG=Rn.45191 /UG_TITLE=ESTs AW521487 Similar to leucine rich repeat containing 10 RGD1564983 309208 NM_001107577 0005515 // protein binding // inferred from electronic annotation 1391393_at BE117623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117623 /DB_XREF=gi:8509728 /DB_XREF=UI-R-BS1-aze-a-04-0-UI.s1 /CLONE=UI-R-BS1-aze-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.45254.1 /TIER=ConsEnd /STK=3 /UG=Rn.45254 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BE117623 ubiquitin protein ligase E3A Ube3a 361585 NM_001191837 /// XM_001055915 /// XM_341867 0001541 // ovarian follicle development // not recorded /// 0006464 // protein modification process // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0030521 // androgen receptor signaling pathway // not recorded /// 0035037 // sperm entry // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060736 // prostate gland growth // not recorded /// 0070936 // protein K48-linked ubiquitination // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded 0003713 // transcription coactivator activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1391394_s_at AI071374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071374 /DB_XREF=gi:3397589 /DB_XREF=UI-R-C2-mw-b-02-0-UI.s1 /CLONE=UI-R-C2-mw-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.21923.1 /TIER=ConsEnd /STK=3 /UG=Rn.21923 /UG_TITLE=ESTs AI071374 platelet derived growth factor receptor, beta polypeptide Pdgfrb 24629 NM_031525 0001701 // in utero embryonic development // not recorded /// 0001822 // kidney development // not recorded /// 0001894 // tissue homeostasis // not recorded /// 0006024 // glycosaminoglycan biosynthetic process // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006807 // nitrogen compound metabolic process // not recorded /// 0007165 // signal transduction // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0007243 // intracellular protein kinase cascade // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0009636 // response to toxin // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0030325 // adrenal gland development // not recorded /// 0030335 // positive regulation of cell migration // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032967 // positive regulation of collagen biosynthetic process // inferred from mutant phenotype /// 0033993 // response to lipid // inferred from expression pattern /// 0034405 // response to fluid shear stress // inferred from expression pattern /// 0042060 // wound healing // inferred from expression pattern /// 0042542 // response to hydrogen peroxide // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // not recorded /// 0048008 // platelet-derived growth factor receptor signaling pathway // not recorded /// 0048010 // vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // not recorded /// 0048745 // smooth muscle tissue development // not recorded /// 0048839 // inner ear development // inferred from expression pattern /// 0050730 // regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0055093 // response to hyperoxia // inferred from expression pattern /// 0060326 // cell chemotaxis // not recorded 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005017 // platelet-derived growth factor receptor activity // inferred from direct assay /// 0005017 // platelet-derived growth factor receptor activity // traceable author statement /// 0005019 // platelet-derived growth factor beta-receptor activity // not recorded /// 0005021 // vascular endothelial growth factor receptor activity // inferred from electronic annotation /// 0005161 // platelet-derived growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction /// 0048407 // platelet-derived growth factor binding // inferred from electronic annotation /// 0048407 // platelet-derived growth factor binding // not recorded 1391395_at AI170715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170715 /DB_XREF=gi:3710755 /DB_XREF=EST216651 /CLONE=RMUBA38 /FEA=EST /CNT=3 /TID=Rn.22466.1 /TIER=ConsEnd /STK=3 /UG=Rn.22466 /UG_TITLE=ESTs, Weakly similar to DD21_MOUSE NUCLEOLAR RNA HELICASE II (NUCLEOLAR RNA HELICASE GU) (RH IIGU) (DEAD BOX PROTEIN 21) (M.musculus) AI170715 DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 Ddx50 361848 NM_001013198 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1391396_at AI136358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136358 /DB_XREF=gi:3637135 /DB_XREF=UI-R-C2p-od-b-04-0-UI.s1 /CLONE=UI-R-C2p-od-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.63708.1 /TIER=ConsEnd /STK=3 /UG=Rn.63708 /UG_TITLE=ESTs, Moderately similar to T29007 the above GenBank entry begins at aa 120 - Caenorhabditis elegans (C.elegans) AI136358 Elongation factor Tu GTP binding domain containing 2 Eftud2 287739 XM_001081526 /// XM_213492 0008380 // RNA splicing // not recorded 0005634 // nucleus // not recorded /// 0015030 // Cajal body // inferred from electronic annotation /// 0015030 // Cajal body // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1391397_at BF418393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418393 /DB_XREF=gi:11406382 /DB_XREF=UI-R-BJ2-box-h-04-0-UI.s1 /CLONE=UI-R-BJ2-box-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.20783.1 /TIER=ConsEnd /STK=3 /UG=Rn.20783 /UG_TITLE=ESTs BF418393 1391398_at AI715415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715415 /DB_XREF=gi:5032668 /DB_XREF=UI-R-Y0-abm-c-08-0-UI.s1 /CLONE=UI-R-Y0-abm-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.41194.1 /TIER=ConsEnd /STK=3 /UG=Rn.41194 /UG_TITLE=ESTs, Weakly similar to DnaJ-like protein (Rattus norvegicus) (R.norvegicus) AI715415 1391399_at AW524037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524037 /DB_XREF=gi:7166387 /DB_XREF=UI-R-BJ0p-aik-d-09-0-UI.s1 /CLONE=UI-R-BJ0p-aik-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.43762.1 /TIER=ConsEnd /STK=3 /UG=Rn.43762 /UG_TITLE=ESTs AW524037 1391400_at BI296500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296500 /DB_XREF=gi:14960984 /DB_XREF=UI-R-CV2-cgr-h-11-0-UI.s1 /CLONE=UI-R-CV2-cgr-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.66231.1 /TIER=ConsEnd /STK=3 /UG=Rn.66231 /UG_TITLE=ESTs BI296500 complexin 3 Cplx3 501005 NM_001109295 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0016079 // synaptic vesicle exocytosis // not recorded /// 0030073 // insulin secretion // not recorded /// 0046928 // regulation of neurotransmitter secretion // not recorded /// 0055085 // transmembrane transport // not recorded 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // not recorded /// 0045202 // synapse // not recorded 0000149 // SNARE binding // not recorded /// 0005326 // neurotransmitter transporter activity // not recorded /// 0019905 // syntaxin binding // inferred from electronic annotation 1391401_at AI113217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113217 /DB_XREF=gi:3513166 /DB_XREF=UI-R-C2p-np-h-10-0-UI.s1 /CLONE=UI-R-C2p-np-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.23645.1 /TIER=ConsEnd /STK=3 /UG=Rn.23645 /UG_TITLE=ESTs AI113217 1391402_at AW535190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535190 /DB_XREF=gi:7177649 /DB_XREF=UI-R-C4-alu-g-08-0-UI.s1 /CLONE=UI-R-C4-alu-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.53890.1 /TIER=ConsEnd /STK=3 /UG=Rn.53890 /UG_TITLE=ESTs, Weakly similar to TNP1_HUMAN TUMOR NECROSIS FACTOR, ALPHA-INDUCED PROTEIN 1, ENDOTHELIAL (H.sapiens) AW535190 Potassium channel tetramerisation domain containing 18 Kctd18 301436 NM_001106914 0006813 // potassium ion transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1391403_at BF399795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399795 /DB_XREF=gi:11384805 /DB_XREF=UI-R-CA0-bhy-g-05-0-UI.s2 /CLONE=UI-R-CA0-bhy-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.49469.1 /TIER=ConsEnd /STK=3 /UG=Rn.49469 /UG_TITLE=ESTs BF399795 1391404_at BF402732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402732 /DB_XREF=gi:11390707 /DB_XREF=UI-R-CA0-bho-h-11-0-UI.s1 /CLONE=UI-R-CA0-bho-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.62690.1 /TIER=ConsEnd /STK=3 /UG=Rn.62690 /UG_TITLE=ESTs BF402732 stromal antigen 2 Stag2 313304 NM_001173507 /// XM_001059059 /// XM_002727666 /// XM_002727667 /// XM_002730173 /// XM_002730174 /// XM_233108 0007062 // sister chromatid cohesion // not recorded /// 0032876 // negative regulation of DNA endoreduplication // not recorded 0000785 // chromatin // not recorded /// 0005634 // nucleus // not recorded /// 0015629 // actin cytoskeleton // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391405_at BE118739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118739 /DB_XREF=gi:8510844 /DB_XREF=UI-R-CA0-bab-b-08-0-UI.s1 /CLONE=UI-R-CA0-bab-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.64280.1 /TIER=ConsEnd /STK=3 /UG=Rn.64280 /UG_TITLE=ESTs, Weakly similar to F-SPONDIN PRECURSOR (R.norvegicus) BE118739 thrombospondin, type I, domain containing 7A Thsd7a 500032 NM_001191970 /// XM_001055908 /// XM_575387 1391406_at AI169572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169572 /DB_XREF=gi:4134414 /DB_XREF=EST215451 /CLONE=RKIBU65 /FEA=EST /CNT=3 /TID=Rn.18662.1 /TIER=ConsEnd /STK=3 /UG=Rn.18662 /UG_TITLE=ESTs AI169572 1391407_at BF392634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392634 /DB_XREF=gi:11377491 /DB_XREF=UI-R-CA0-bfl-e-02-0-UI.s1 /CLONE=UI-R-CA0-bfl-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.63519.1 /TIER=ConsEnd /STK=3 /UG=Rn.63519 /UG_TITLE=ESTs BF392634 1391408_a_at AA891753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891753 /DB_XREF=gi:3018632 /DB_XREF=EST195556 /CLONE=RKIAG37 /FEA=EST /CNT=1 /TID=Rn.30.2 /TIER=ConsEnd /STK=0 /UG=Rn.30 /UG_TITLE=ESTs AA891753 similar to chromosome 7 open reading frame 11 LOC684996 684996 NM_001109452 1391409_at BI276097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276097 /DB_XREF=gi:14920681 /DB_XREF=UI-R-CX0-bwz-a-09-0-UI.s1 /CLONE=UI-R-CX0-bwz-a-09-0-UI /FEA=EST /CNT=29 /TID=Rn.7787.1 /TIER=ConsEnd /STK=2 /UG=Rn.7787 /UG_TITLE=ESTs, Weakly similar to JE0120 glycoprotein A - mouse (M.musculus) BI276097 amnionless homolog (mouse) Amn 314459 NM_001108061 0007588 // excretion // not recorded /// 0008104 // protein localization // not recorded 0045177 // apical part of cell // not recorded 1391410_at BM392039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392039 /DB_XREF=gi:18192092 /DB_XREF=UI-R-DO1-cmk-o-14-0-UI.s1 /CLONE=UI-R-DO1-cmk-o-14-0-UI /FEA=EST /CNT=19 /TID=Rn.37535.1 /TIER=ConsEnd /STK=2 /UG=Rn.37535 /UG_TITLE=ESTs, Weakly similar to I49636 DNA-binding protein - mouse (M.musculus) BM392039 1391411_at AI179941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179941 /DB_XREF=gi:3730579 /DB_XREF=EST223672 /CLONE=RSPCO01 /FEA=EST /CNT=13 /TID=Rn.7075.1 /TIER=ConsEnd /STK=2 /UG=Rn.7075 /UG_TITLE=ESTs AI179941 Similar to formin-like 2 isoform B RGD1560248 499797 XM_001066238 /// XM_002726151 /// XM_575134 0016043 // cellular component organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from electronic annotation 1391412_at AA996841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996841 /DB_XREF=gi:4280605 /DB_XREF=UI-R-C0-hg-f-01-0-UI.s1 /CLONE=UI-R-C0-hg-f-01-0-UI /FEA=EST /CNT=12 /TID=Rn.8344.1 /TIER=ConsEnd /STK=2 /UG=Rn.8344 /UG_TITLE=ESTs, Moderately similar to I49635 mouse Dhm1 protein - mouse (M.musculus) AA996841 5'-3' exoribonuclease 2 Xrn2 362229 NM_001108596 0000738 // DNA catabolic process, exonucleolytic // not recorded /// 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0016049 // cell growth // not recorded /// 0016070 // RNA metabolic process // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0004534 // 5'-3' exoribonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008409 // 5'-3' exonuclease activity // not recorded 1391413_at BM387140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387140 /DB_XREF=gi:18187193 /DB_XREF=UI-R-CN1-cji-f-05-0-UI.s1 /CLONE=UI-R-CN1-cji-f-05-0-UI /FEA=EST /CNT=26 /TID=Rn.25070.1 /TIER=ConsEnd /STK=2 /UG=Rn.25070 /UG_TITLE=ESTs, Highly similar to JC2436 5-nucleotidase (H.sapiens) BM387140 5'-nucleotidase, cytosolic II LOC100363253 100363253 XM_002728891 0046872 // metal ion binding // inferred from electronic annotation 1391414_at AI409142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409142 /DB_XREF=gi:4252646 /DB_XREF=EST237434 /CLONE=ROVEO04 /FEA=EST /CNT=11 /TID=Rn.25339.1 /TIER=ConsEnd /STK=2 /UG=Rn.25339 /UG_TITLE=ESTs AI409142 similar to RIKEN cDNA D930015E06 LOC679811 679811 XM_001054550 /// XM_002725985 1391415_at AI043694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043694 /DB_XREF=gi:3290429 /DB_XREF=UI-R-C0-jl-e-06-0-UI.s1 /CLONE=UI-R-C0-jl-e-06-0-UI /FEA=EST /CNT=13 /TID=Rn.20046.1 /TIER=ConsEnd /STK=2 /UG=Rn.20046 /UG_TITLE=ESTs, Weakly similar to T27134 hypothetical protein Y53C12B.2 - Caenorhabditis elegans (C.elegans) AI043694 partner of NOB1 homolog (S. cerevisiae) Pno1 289809 NM_199083 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation 1391416_at BE117929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117929 /DB_XREF=gi:8510034 /DB_XREF=UI-R-BS1-azm-f-06-0-UI.s1 /CLONE=UI-R-BS1-azm-f-06-0-UI /FEA=EST /CNT=10 /TID=Rn.21559.1 /TIER=ConsEnd /STK=2 /UG=Rn.21559 /UG_TITLE=ESTs, Weakly similar to S68418 protein phosphatase 1M chain M110 isoform - rat (R.norvegicus) BE117929 ankyrin repeat domain 17 Ankrd17 289521 NM_001105999 0003723 // RNA binding // inferred from electronic annotation 1391417_at AA925145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925145 /DB_XREF=gi:4236336 /DB_XREF=UI-R-A1-en-b-11-0-UI.s1 /CLONE=UI-R-A1-en-b-11-0-UI /FEA=EST /CNT=13 /TID=Rn.8494.1 /TIER=ConsEnd /STK=2 /UG=Rn.8494 /UG_TITLE=ESTs, Weakly similar to betaine-homocysteine methyltransferase (Rattus norvegicus) (R.norvegicus) AA925145 betaine-homocysteine methyltransferase 2 Bhmt2 365972 NM_001014256 0009086 // methionine biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008898 // homocysteine S-methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047150 // betaine-homocysteine S-methyltransferase activity // inferred from electronic annotation 1391418_at AI072641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072641 /DB_XREF=gi:3398835 /DB_XREF=UI-R-C2-nn-g-08-0-UI.s1 /CLONE=UI-R-C2-nn-g-08-0-UI /FEA=EST /CNT=11 /TID=Rn.7508.1 /TIER=ConsEnd /STK=2 /UG=Rn.7508 /UG_TITLE=ESTs AI072641 1391419_at BG376923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376923 /DB_XREF=gi:13301400 /DB_XREF=UI-R-CU0-bvl-b-03-0-UI.s1 /CLONE=UI-R-CU0-bvl-b-03-0-UI /FEA=EST /CNT=10 /TID=Rn.23288.1 /TIER=ConsEnd /STK=2 /UG=Rn.23288 /UG_TITLE=ESTs BG376923 AT hook, DNA binding motif, containing 1 Ahdc1 362617 NM_001134956 0003677 // DNA binding // inferred from electronic annotation 1391420_at AA964818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964818 /DB_XREF=gi:4279692 /DB_XREF=UI-R-C0-gx-b-01-0-UI.s1 /CLONE=UI-R-C0-gx-b-01-0-UI /FEA=EST /CNT=10 /TID=Rn.12260.1 /TIER=ConsEnd /STK=2 /UG=Rn.12260 /UG_TITLE=ESTs AA964818 1391421_at AI599819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599819 /DB_XREF=gi:4608867 /DB_XREF=EST251522 /CLONE=REMEM45 /FEA=EST /CNT=9 /TID=Rn.8978.1 /TIER=ConsEnd /STK=2 /UG=Rn.8978 /UG_TITLE=ESTs, Weakly similar to acyl-CoA dehydrogenase (R.norvegicus) AI599819 similar to Acyl-CoA dehydrogenase family member 8, mitochondrial precursor (ACAD-8) RGD1564209 367046 XM_001053896 /// XM_345912 0055114 // oxidation reduction // inferred from electronic annotation 0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1391422_at BE100486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100486 /DB_XREF=gi:8492379 /DB_XREF=UI-R-BJ1-aue-a-08-0-UI.s1 /CLONE=UI-R-BJ1-aue-a-08-0-UI /FEA=EST /CNT=9 /TID=Rn.23701.1 /TIER=ConsEnd /STK=2 /UG=Rn.23701 /UG_TITLE=ESTs BE100486 DnaJ (Hsp40) homolog, subfamily B, member 6 Dnajb6 362293 NM_001013209 0006457 // protein folding // not recorded /// 0043154 // negative regulation of caspase activity // not recorded /// 0045109 // intermediate filament organization // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0060710 // chorio-allantoic fusion // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0001671 // ATPase activator activity // not recorded /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // not recorded /// 0051087 // chaperone binding // not recorded 1391423_at AA944812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944812 /DB_XREF=gi:3104728 /DB_XREF=EST200311 /CLONE=REMAP45 /FEA=EST /CNT=9 /TID=Rn.879.1 /TIER=ConsEnd /STK=2 /UG=Rn.879 /UG_TITLE=ESTs AA944812 1391424_at AA944326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944326 /DB_XREF=gi:3104242 /DB_XREF=EST199825 /CLONE=REMAF43 /FEA=EST /CNT=9 /TID=Rn.7713.1 /TIER=ConsEnd /STK=2 /UG=Rn.7713 /UG_TITLE=ESTs AA944326 1391425_at AW528585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528585 /DB_XREF=gi:7170999 /DB_XREF=UI-R-BO1-ajr-a-10-0-UI.s1 /CLONE=UI-R-BO1-ajr-a-10-0-UI /FEA=EST /CNT=14 /TID=Rn.24667.1 /TIER=ConsEnd /STK=2 /UG=Rn.24667 /UG_TITLE=ESTs, Moderately similar to Wiskott-Aldrich syndrome homolog (human) binding protein (Mus musculus) (M.musculus) AW528585 NCK interacting protein with SH3 domain Nckipsd 301009 NM_001106857 0005515 // protein binding // not recorded 1391426_a_at AI578071 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578071 /DB_XREF=gi:4562447 /DB_XREF=UI-R-C3-tk-b-08-0-UI.s2 /CLONE=UI-R-C3-tk-b-08-0-UI /FEA=EST /CNT=1 /TID=Rn.18022.2 /TIER=ConsEnd /STK=1 /UG=Rn.18022 /UG_TITLE=ESTs AI578071 PEST proteolytic signal containing nuclear protein Pcnp 288165 NM_001047846 0007049 // cell cycle // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from sequence or structural similarity /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391427_at AW254563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254563 /DB_XREF=gi:6598154 /DB_XREF=UI-R-BJ0-aej-h-01-0-UI.s1 /CLONE=UI-R-BJ0-aej-h-01-0-UI /FEA=EST /CNT=10 /TID=Rn.25178.1 /TIER=ConsEnd /STK=2 /UG=Rn.25178 /UG_TITLE=ESTs, Weakly similar to T20417 hypothetical protein E02H1.1 - Caenorhabditis elegans (C.elegans) AW254563 DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) Dimt1l 294718 NM_001106408 0000154 // rRNA modification // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000179 // rRNA (adenine-N6,N6-)-dimethyltransferase activity // inferred from electronic annotation /// 0008649 // rRNA methyltransferase activity // inferred from electronic annotation /// 0016433 // rRNA (adenine) methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1391428_at AI639162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639162 /DB_XREF=gi:4700196 /DB_XREF=rx01122s /CLONE=rx01122 /FEA=EST /CNT=9 /TID=Rn.28326.1 /TIER=ConsEnd /STK=2 /UG=Rn.28326 /UG_TITLE=ESTs AI639162 1391429_at AW434961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434961 /DB_XREF=gi:6966268 /DB_XREF=UI-R-BJ0p-afv-a-04-0-UI.s1 /CLONE=UI-R-BJ0p-afv-a-04-0-UI /FEA=EST /CNT=9 /TID=Rn.22490.1 /TIER=ConsEnd /STK=2 /UG=Rn.22490 /UG_TITLE=ESTs AW434961 hemochromatosis type 2 (juvenile) homolog (human) Hfe2 310681 NM_001012080 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0031225 // anchored to membrane // inferred from electronic annotation 1391430_at BE105855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105855 /DB_XREF=gi:8497957 /DB_XREF=UI-R-BO1-asj-a-06-0-UI.s1 /CLONE=UI-R-BO1-asj-a-06-0-UI /FEA=EST /CNT=8 /TID=Rn.16198.1 /TIER=ConsEnd /STK=2 /UG=Rn.16198 /UG_TITLE=ESTs, Weakly similar to RDRTB5 cytochrome-b5 reductase (R.norvegicus) BE105855 cytochrome b5 reductase 2 Cyb5r2 365345 NM_001014244 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded 0004128 // cytochrome-b5 reductase activity // inferred from electronic annotation /// 0004128 // cytochrome-b5 reductase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1391431_at AI712476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712476 /DB_XREF=gi:5016276 /DB_XREF=UI-R-AF1-aap-a-01-0-UI.s1 /CLONE=UI-R-AF1-aap-a-01-0-UI /FEA=EST /CNT=8 /TID=Rn.18247.1 /TIER=ConsEnd /STK=2 /UG=Rn.18247 /UG_TITLE=ESTs AI712476 1391432_at BM385275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385275 /DB_XREF=gi:18185328 /DB_XREF=UI-R-EB1-clf-j-14-0-UI.s1 /CLONE=UI-R-EB1-clf-j-14-0-UI /FEA=EST /CNT=8 /TID=Rn.12693.1 /TIER=ConsEnd /STK=2 /UG=Rn.12693 /UG_TITLE=ESTs, Moderately similar to T34531 hypothetical protein DKFZp434P1215.1 (H.sapiens) BM385275 WD repeat domain 75 Wdr75 314545 NM_001047889 1391433_at AA899721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899721 /DB_XREF=gi:4232218 /DB_XREF=UI-R-E0-dg-c-07-0-UI.s1 /CLONE=UI-R-E0-dg-c-07-0-UI /FEA=EST /CNT=8 /TID=Rn.6596.1 /TIER=ConsEnd /STK=2 /UG=Rn.6596 /UG_TITLE=ESTs AA899721 acyl-CoA thioesterase 2 Acot2 192272 NM_138907 0000038 // very long-chain fatty acid metabolic process // not recorded /// 0001666 // response to hypoxia // inferred from direct assay /// 0001676 // long-chain fatty acid metabolic process // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006637 // acyl-CoA metabolic process // inferred from direct assay /// 0006637 // acyl-CoA metabolic process // not recorded /// 0006637 // acyl-CoA metabolic process // inferred from electronic annotation /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0033555 // multicellular organismal response to stress // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042760 // very long-chain fatty acid catabolic process // inferred from direct assay /// 0070849 // response to epidermal growth factor stimulus // inferred from expression pattern 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016290 // palmitoyl-CoA hydrolase activity // inferred from direct assay /// 0016290 // palmitoyl-CoA hydrolase activity // inferred from electronic annotation /// 0016291 // acyl-CoA thioesterase activity // inferred from direct assay /// 0016291 // acyl-CoA thioesterase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016790 // thiolester hydrolase activity // inferred from electronic annotation 1391434_at BF389910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389910 /DB_XREF=gi:11374750 /DB_XREF=UI-R-BS2-bdq-b-05-0-UI.s1 /CLONE=UI-R-BS2-bdq-b-05-0-UI /FEA=EST /CNT=8 /TID=Rn.38469.1 /TIER=ConsEnd /STK=2 /UG=Rn.38469 /UG_TITLE=ESTs, Moderately similar to S21347 hypothetical protein 3 - rat (R.norvegicus) BF389910 RAB3A, member RAS oncogene family Rab3a 25531 NM_013018 0003016 // respiratory system process // inferred from electronic annotation /// 0003016 // respiratory system process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0007005 // mitochondrion organization // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016079 // synaptic vesicle exocytosis // inferred from electronic annotation /// 0016079 // synaptic vesicle exocytosis // not recorded /// 0016188 // synaptic vesicle maturation // inferred from electronic annotation /// 0016188 // synaptic vesicle maturation // not recorded /// 0017157 // regulation of exocytosis // not recorded /// 0017157 // regulation of exocytosis // inferred from electronic annotation /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0031630 // regulation of synaptic vesicle fusion to presynaptic membrane // inferred from electronic annotation /// 0031630 // regulation of synaptic vesicle fusion to presynaptic membrane // not recorded /// 0032482 // Rab protein signal transduction // inferred by curator /// 0048790 // maintenance of presynaptic active zone structure // inferred from electronic annotation /// 0048790 // maintenance of presynaptic active zone structure // not recorded /// 0050975 // sensory perception of touch // inferred from electronic annotation /// 0050975 // sensory perception of touch // not recorded /// 0051602 // response to electrical stimulus // inferred from electronic annotation /// 0051602 // response to electrical stimulus // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0008021 // synaptic vesicle // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0060201 // clathrin sculpted acetylcholine transport vesicle membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0001671 // ATPase activator activity // inferred from direct assay /// 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0051020 // GTPase binding // inferred from physical interaction /// 0051117 // ATPase binding // inferred from direct assay 1391435_at BI278687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278687 /DB_XREF=gi:14925782 /DB_XREF=UI-R-DB0-bza-f-05-0-UI.s1 /CLONE=UI-R-DB0-bza-f-05-0-UI /FEA=EST /CNT=8 /TID=Rn.40314.1 /TIER=ConsEnd /STK=2 /UG=Rn.40314 /UG_TITLE=ESTs, Moderately similar to PLTP MOUSE PHOSPHOLIPID TRANSFER PROTEIN PRECURSOR (M.musculus) BI278687 phospholipid transfer protein Pltp 296371 NM_001168543 0008289 // lipid binding // inferred from electronic annotation 1391436_at BF283714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283714 /DB_XREF=gi:11214784 /DB_XREF=EST448305 /CLONE=RGIEF80 /FEA=EST /CNT=13 /TID=Rn.8464.1 /TIER=ConsEnd /STK=2 /UG=Rn.8464 /UG_TITLE=ESTs BF283714 1391437_at AA874995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA874995 /DB_XREF=gi:4230876 /DB_XREF=UI-R-E0-cf-d-08-0-UI.s1 /CLONE=UI-R-E0-cf-d-08-0-UI /FEA=EST /CNT=10 /TID=Rn.3197.1 /TIER=ConsEnd /STK=2 /UG=Rn.3197 /UG_TITLE=ESTs AA874995 glycolipid transfer protein domain containing 1 Gltpd1 313771 NM_001007703 0046836 // glycolipid transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0017089 // glycolipid transporter activity // inferred from electronic annotation /// 0051861 // glycolipid binding // inferred from electronic annotation 1391438_at BF283846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283846 /DB_XREF=gi:11214916 /DB_XREF=EST448437 /CLONE=RGIEH36 /FEA=EST /CNT=8 /TID=Rn.17053.1 /TIER=ConsEnd /STK=2 /UG=Rn.17053 /UG_TITLE=ESTs BF283846 1391439_at BI278193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278193 /DB_XREF=gi:14924799 /DB_XREF=UI-R-CZ0-bye-e-11-0-UI.s1 /CLONE=UI-R-CZ0-bye-e-11-0-UI /FEA=EST /CNT=8 /TID=Rn.35401.1 /TIER=ConsEnd /STK=2 /UG=Rn.35401 /UG_TITLE=ESTs BI278193 1391440_at AW521245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521245 /DB_XREF=gi:7163623 /DB_XREF=UI-R-BO0-agk-h-08-0-UI.s1 /CLONE=UI-R-BO0-agk-h-08-0-UI /FEA=EST /CNT=8 /TID=Rn.20483.1 /TIER=ConsEnd /STK=2 /UG=Rn.20483 /UG_TITLE=ESTs AW521245 testis expressed 10 Tex10 298065 NM_001106653 0071339 // MLL1 complex // not recorded 0005488 // binding // inferred from electronic annotation 1391441_at AA899943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899943 /DB_XREF=gi:4232435 /DB_XREF=UI-R-E0-cr-b-08-0-UI.s2 /CLONE=UI-R-E0-cr-b-08-0-UI /FEA=EST /CNT=8 /TID=Rn.8955.1 /TIER=ConsEnd /STK=2 /UG=Rn.8955 /UG_TITLE=ESTs AA899943 1391442_at AA957585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957585 /DB_XREF=gi:4277475 /DB_XREF=UI-R-E1-gb-a-06-0-UI.s1 /CLONE=UI-R-E1-gb-a-06-0-UI /FEA=EST /CNT=8 /TID=Rn.7771.1 /TIER=ConsEnd /STK=2 /UG=Rn.7771 /UG_TITLE=ESTs AA957585 EH-domain containing 3 Ehd3 192249 NM_138890 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030139 // endocytic vesicle // inferred from electronic annotation /// 0030139 // endocytic vesicle // not recorded /// 0055038 // recycling endosome membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1391443_at BF289340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289340 /DB_XREF=gi:11220410 /DB_XREF=EST453931 /CLONE=RGIHD64 /FEA=EST /CNT=7 /TID=Rn.15205.1 /TIER=ConsEnd /STK=2 /UG=Rn.15205 /UG_TITLE=ESTs BF289340 similar to chromosome 14 open reading frame 35 RGD1559923 498489 NM_001109099 0008152 // metabolic process // inferred from electronic annotation 0008080 // N-acetyltransferase activity // inferred from electronic annotation 1391444_at BF285611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285611 /DB_XREF=gi:11216681 /DB_XREF=EST450202 /CLONE=RGIFH78 /FEA=EST /CNT=7 /TID=Rn.45255.1 /TIER=ConsEnd /STK=2 /UG=Rn.45255 /UG_TITLE=ESTs BF285611 1391445_at AI009603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009603 /DB_XREF=gi:3223435 /DB_XREF=EST204054 /CLONE=RLUBG20 /FEA=EST /CNT=7 /TID=Rn.13674.1 /TIER=ConsEnd /STK=2 /UG=Rn.13674 /UG_TITLE=ESTs AI009603 1391446_at AA817742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817742 /DB_XREF=gi:4198271 /DB_XREF=UI-R-A0-aa-h-02-0-UI.s1 /CLONE=UI-R-A0-aa-h-02-0-UI /FEA=EST /CNT=7 /TID=Rn.16385.1 /TIER=ConsEnd /STK=2 /UG=Rn.16385 /UG_TITLE=ESTs, Highly similar to CD20 MOUSE B-CELL SURFACE PROTEIN CD20 HOMOLOG (M.musculus) AA817742 membrane-spanning 4-domains, subfamily A, member 1 Ms4a1 309217 NM_001107578 0009897 // external side of plasma membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 1391447_at BI299229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299229 /DB_XREF=gi:14975509 /DB_XREF=UI-R-CV2-chs-g-02-0-UI.s1 /CLONE=UI-R-CV2-chs-g-02-0-UI /FEA=EST /CNT=7 /TID=Rn.63969.1 /TIER=ConsEnd /STK=2 /UG=Rn.63969 /UG_TITLE=ESTs BI299229 1391448_at BI289620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289620 /DB_XREF=gi:14947380 /DB_XREF=UI-R-DK0-cfi-b-05-0-UI.s1 /CLONE=UI-R-DK0-cfi-b-05-0-UI /FEA=EST /CNT=7 /TID=Rn.54364.1 /TIER=ConsEnd /STK=2 /UG=Rn.54364 /UG_TITLE=ESTs BI289620 cysteine rich transmembrane BMP regulator 1 (chordin like) Crim1 298744 NM_001169103 0001558 // regulation of cell growth // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation 1391449_at AI058696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058696 /DB_XREF=gi:3332473 /DB_XREF=UI-R-C1-kt-d-10-0-UI.s1 /CLONE=UI-R-C1-kt-d-10-0-UI /FEA=EST /CNT=7 /TID=Rn.40958.1 /TIER=ConsEnd /STK=2 /UG=Rn.40958 /UG_TITLE=ESTs AI058696 Lipoma HMGIC fusion partner Lhfp 499615 NM_001109183 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1391450_at AI044651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044651 /DB_XREF=gi:3291512 /DB_XREF=UI-R-C1-jx-d-07-0-UI.s1 /CLONE=UI-R-C1-jx-d-07-0-UI /FEA=EST /CNT=7 /TID=Rn.19018.1 /TIER=ConsEnd /STK=2 /UG=Rn.19018 /UG_TITLE=ESTs, Weakly similar to LYOX RAT PROTEIN-LYSINE 6-OXIDASE PRECURSOR (R.norvegicus) AI044651 lysyl oxidase-like 2 Loxl2 290350 NM_001106047 0055114 // oxidation reduction // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from electronic annotation /// 0016641 // oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor // inferred from electronic annotation 1391451_at AI228633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228633 /DB_XREF=gi:3812520 /DB_XREF=EST225328 /CLONE=RBRCX44 /FEA=EST /CNT=7 /TID=Rn.55339.1 /TIER=ConsEnd /STK=2 /UG=Rn.55339 /UG_TITLE=ESTs AI228633 Phosphoenolpyruvate carboxykinase 2 (mitochondrial) Pck2 361042 NM_001108377 0006094 // gluconeogenesis // inferred from direct assay /// 0006094 // gluconeogenesis // inferred from electronic annotation /// 0006107 // oxaloacetate metabolic process // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0004611 // phosphoenolpyruvate carboxykinase activity // inferred from direct assay /// 0004611 // phosphoenolpyruvate carboxykinase activity // inferred from electronic annotation /// 0004613 // phosphoenolpyruvate carboxykinase (GTP) activity // inferred from direct assay /// 0004613 // phosphoenolpyruvate carboxykinase (GTP) activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0017076 // purine nucleotide binding // inferred from electronic annotation 1391452_at AI044680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044680 /DB_XREF=gi:3291541 /DB_XREF=UI-R-C1-kd-a-04-0-UI.s1 /CLONE=UI-R-C1-kd-a-04-0-UI /FEA=EST /CNT=7 /TID=Rn.15995.1 /TIER=ConsEnd /STK=2 /UG=Rn.15995 /UG_TITLE=ESTs AI044680 zinc finger protein 418 Zfp418 292548 NM_001191620 /// XM_001067437 /// XM_218208 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391453_at BF390736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390736 /DB_XREF=gi:11375583 /DB_XREF=UI-R-CA1-bco-h-01-0-UI.s1 /CLONE=UI-R-CA1-bco-h-01-0-UI /FEA=EST /CNT=7 /TID=Rn.14957.1 /TIER=ConsEnd /STK=2 /UG=Rn.14957 /UG_TITLE=ESTs BF390736 Epstein-Barr virus induced 3 Ebi3 680609 NM_001109421 0016020 // membrane // inferred from electronic annotation 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0045523 // interleukin-27 receptor binding // not recorded 1391454_at BF286105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF286105 /DB_XREF=gi:11217175 /DB_XREF=EST450696 /CLONE=RGIFM31 /FEA=EST /CNT=12 /TID=Rn.6536.3 /TIER=ConsEnd /STK=2 /UG=Rn.6536 /UG_TITLE=ESTs BF286105 CREB/ATF bZIP transcription factor Crebzf 293112 NM_001106279 0006350 // transcription // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0009615 // response to virus // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0045814 // negative regulation of gene expression, epigenetic // not recorded /// 0051090 // regulation of transcription factor activity // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1391455_at AI228280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228280 /DB_XREF=gi:4135334 /DB_XREF=EST224975 /CLONE=RBRCS72 /FEA=EST /CNT=10 /TID=Rn.36848.1 /TIER=ConsEnd /STK=2 /UG=Rn.36848 /UG_TITLE=ESTs AI228280 zinc finger CCCH-type containing 18 Zc3h18 292067 NM_201416 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391456_at AA998207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998207 /DB_XREF=gi:4288264 /DB_XREF=UI-R-C0-ib-c-03-0-UI.s1 /CLONE=UI-R-C0-ib-c-03-0-UI /FEA=EST /CNT=9 /TID=Rn.17415.1 /TIER=ConsEnd /STK=2 /UG=Rn.17415 /UG_TITLE=ESTs AA998207 junctional adhesion molecule 3 Jam3 315509 NM_001004269 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1391457_a_at BF563976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563976 /DB_XREF=gi:11673754 /DB_XREF=UI-R-C4-aky-f-05-0-UI.r1 /CLONE=UI-R-C4-aky-f-05-0-UI /FEA=EST /CNT=1 /TID=Rn.47794.2 /TIER=ConsEnd /STK=0 /UG=Rn.47794 /UG_TITLE=ESTs BF563976 iroquois homeobox 2 Irx2 306657 NM_001039505 0001656 // metanephros development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0072086 // specification of loop of Henle identity // not recorded /// 0072272 // proximal/distal pattern formation involved in metanephric nephron development // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1391458_at BE120446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120446 /DB_XREF=gi:8512551 /DB_XREF=UI-R-CA0-bam-e-08-0-UI.s1 /CLONE=UI-R-CA0-bam-e-08-0-UI /FEA=EST /CNT=8 /TID=Rn.43533.1 /TIER=ConsEnd /STK=2 /UG=Rn.43533 /UG_TITLE=ESTs, Weakly similar to development-related protein (Rattus norvegicus) (R.norvegicus) BE120446 N-myc downstream regulated gene 1 Ndrg1 299923 NM_001011991 0045576 // mast cell activation // inferred from electronic annotation /// 0045576 // mast cell activation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391459_at BI296636 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296636 /DB_XREF=gi:14961256 /DB_XREF=UI-R-CV2-cgt-e-09-0-UI.s1 /CLONE=UI-R-CV2-cgt-e-09-0-UI /FEA=EST /CNT=8 /TID=Rn.46899.1 /TIER=ConsEnd /STK=2 /UG=Rn.46899 /UG_TITLE=ESTs BI296636 1391460_at BF408186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408186 /DB_XREF=gi:11396161 /DB_XREF=UI-R-BJ2-bra-g-03-0-UI.s1 /CLONE=UI-R-BJ2-bra-g-03-0-UI /FEA=EST /CNT=8 /TID=Rn.29012.1 /TIER=ConsEnd /STK=2 /UG=Rn.29012 /UG_TITLE=ESTs BF408186 1391461_at BF285149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285149 /DB_XREF=gi:11216219 /DB_XREF=EST449740 /CLONE=RGIFB10 /FEA=EST /CNT=8 /TID=Rn.21605.1 /TIER=ConsEnd /STK=2 /UG=Rn.21605 /UG_TITLE=ESTs BF285149 similar to hypothetical protein RGD1306576 298002 NM_001106648 0003676 // nucleic acid binding // inferred from electronic annotation 1391462_at AI179635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179635 /DB_XREF=gi:3730273 /DB_XREF=EST223359 /CLONE=RSPCJ84 /FEA=EST /CNT=8 /TID=Rn.21543.1 /TIER=ConsEnd /STK=2 /UG=Rn.21543 /UG_TITLE=ESTs, Weakly similar to B56122 emopamil-binding protein (H.sapiens) AI179635 emopamil binding protein-like Ebpl 361054 NM_001108381 0016125 // sterol metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0047750 // cholestenol delta-isomerase activity // inferred from electronic annotation 1391463_at AI575264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575264 /DB_XREF=gi:4559640 /DB_XREF=UI-R-Y0-vc-e-06-0-UI.s1 /CLONE=UI-R-Y0-vc-e-06-0-UI /FEA=EST /CNT=6 /TID=Rn.38642.1 /TIER=ConsEnd /STK=2 /UG=Rn.38642 /UG_TITLE=ESTs AI575264 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 Ddx58 297989 NM_001106645 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1391464_at BE104324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104324 /DB_XREF=gi:8496424 /DB_XREF=UI-R-BX0-arn-d-12-0-UI.s1 /CLONE=UI-R-BX0-arn-d-12-0-UI /FEA=EST /CNT=6 /TID=Rn.48992.1 /TIER=ConsEnd /STK=2 /UG=Rn.48992 /UG_TITLE=ESTs BE104324 1391465_at BE112623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112623 /DB_XREF=gi:8504728 /DB_XREF=UI-R-BJ1-avn-g-07-0-UI.s1 /CLONE=UI-R-BJ1-avn-g-07-0-UI /FEA=EST /CNT=6 /TID=Rn.49279.1 /TIER=ConsEnd /STK=2 /UG=Rn.49279 /UG_TITLE=ESTs, Weakly similar to T32585 hypothetical protein B0546.2 - Caenorhabditis elegans (C.elegans) BE112623 OTU domain containing 3 Otud3 500572 NM_001191983 /// XM_001071098 /// XM_575939 1391466_at AI170347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170347 /DB_XREF=gi:4134493 /DB_XREF=EST216273 /CLONE=RLUCH21 /FEA=EST /CNT=6 /TID=Rn.22505.1 /TIER=ConsEnd /STK=2 /UG=Rn.22505 /UG_TITLE=ESTs AI170347 1391467_at BE111698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111698 /DB_XREF=gi:8503803 /DB_XREF=UI-R-BJ1-avv-g-05-0-UI.s1 /CLONE=UI-R-BJ1-avv-g-05-0-UI /FEA=EST /CNT=6 /TID=Rn.64928.1 /TIER=ConsEnd /STK=2 /UG=Rn.64928 /UG_TITLE=ESTs, Highly similar to PNX1_HUMAN HOMEOBOX PROTEIN PKNOX1 (HOMEOBOX PROTEIN PREP-1) (H.sapiens) BE111698 PBX/knotted 1 homeobox 1 Pknox1 294322 NM_001013074 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded /// 0030217 // T cell differentiation // inferred from electronic annotation /// 0030217 // T cell differentiation // not recorded /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // not recorded /// 0043010 // camera-type eye development // inferred from electronic annotation /// 0043010 // camera-type eye development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1391468_at AI501673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501673 /DB_XREF=gi:4399524 /DB_XREF=UI-R-C0-is-a-05-0-UI.s1 /CLONE=UI-R-C0-is-a-05-0-UI /FEA=EST /CNT=6 /TID=Rn.55418.1 /TIER=ConsEnd /STK=2 /UG=Rn.55418 /UG_TITLE=ESTs AI501673 Myc target 1 Myct1 292264 NM_001106207 1391469_at AI548930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548930 /DB_XREF=gi:4466418 /DB_XREF=UI-R-C3-tw-a-09-0-UI.s1 /CLONE=UI-R-C3-tw-a-09-0-UI /FEA=EST /CNT=6 /TID=Rn.24037.1 /TIER=ConsEnd /STK=2 /UG=Rn.24037 /UG_TITLE=ESTs, Weakly similar to YQO9_CAEEL Hypothetical 141.2 kDa protein EEED8.9 in chromosome II (C.elegans) AI548930 1391470_at AI407085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407085 /DB_XREF=gi:4250589 /DB_XREF=EST235373 /CLONE=ROVDR89 /FEA=EST /CNT=6 /TID=Rn.25403.1 /TIER=ConsEnd /STK=2 /UG=Rn.25403 /UG_TITLE=ESTs, Highly similar to IMB3_HUMAN IMPORTIN BETA-3 SUBUNIT (H.sapiens) AI407085 Importin 5 Ipo5 306182 XM_001075101 /// XM_224534 0006886 // intracellular protein transport // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation 1391471_at BE116100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116100 /DB_XREF=gi:8508205 /DB_XREF=UI-R-BS1-axz-d-10-0-UI.s1 /CLONE=UI-R-BS1-axz-d-10-0-UI /FEA=EST /CNT=6 /TID=Rn.23922.1 /TIER=ConsEnd /STK=2 /UG=Rn.23922 /UG_TITLE=ESTs, Moderately similar to CPBP RAT CORE PROMOTER ELEMENT-BINDING PROTEIN (R.norvegicus) BE116100 Kruppel-like factor 7 (ubiquitous) Klf7 363243 NM_001108800 0007409 // axonogenesis // not recorded /// 0007411 // axon guidance // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0048813 // dendrite morphogenesis // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded 1391472_at AI502851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502851 /DB_XREF=gi:4400702 /DB_XREF=UI-R-BT0-pm-b-08-0-UI.s1 /CLONE=UI-R-BT0-pm-b-08-0-UI /FEA=EST /CNT=8 /TID=Rn.20784.1 /TIER=ConsEnd /STK=2 /UG=Rn.20784 /UG_TITLE=ESTs, Weakly similar to T08668 hypothetical protein DKFZp564G1516.1 (H.sapiens) AI502851 DAZ interacting protein 1 Dzip1 364475 XM_001053473 /// XM_001078447 /// XM_002725131 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1391473_at BI281193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281193 /DB_XREF=gi:14930681 /DB_XREF=UI-R-CT0s-cat-d-11-0-UI.s1 /CLONE=UI-R-CT0s-cat-d-11-0-UI /FEA=EST /CNT=8 /TID=Rn.43412.1 /TIER=ConsEnd /STK=2 /UG=Rn.43412 /UG_TITLE=ESTs BI281193 1391474_at AA858511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858511 /DB_XREF=gi:4229844 /DB_XREF=UI-R-E0-bo-d-08-0-UI.s1 /CLONE=UI-R-E0-bo-d-08-0-UI /FEA=EST /CNT=7 /TID=Rn.17025.1 /TIER=ConsEnd /STK=2 /UG=Rn.17025 /UG_TITLE=ESTs AA858511 1391475_at AI235307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235307 /DB_XREF=gi:3828813 /DB_XREF=EST231869 /CLONE=ROVCQ12 /FEA=EST /CNT=7 /TID=Rn.14034.1 /TIER=ConsEnd /STK=2 /UG=Rn.14034 /UG_TITLE=ESTs, Weakly similar to S15552 polypyrimidine tract-binding protein 1 - rat (R.norvegicus) AI235307 heterogeneous nuclear ribonucleoprotein L-like Hnrpll 313842 XM_001063027 /// XM_233805 0006397 // mRNA processing // inferred from electronic annotation /// 0033120 // positive regulation of RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0005515 // protein binding // not recorded 1391476_at BE113113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113113 /DB_XREF=gi:8505218 /DB_XREF=UI-R-BJ1-awb-f-12-0-UI.s1 /CLONE=UI-R-BJ1-awb-f-12-0-UI /FEA=EST /CNT=7 /TID=Rn.44028.1 /TIER=ConsEnd /STK=2 /UG=Rn.44028 /UG_TITLE=ESTs BE113113 1391477_at BF396595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396595 /DB_XREF=gi:11381570 /DB_XREF=UI-R-BS2-bdz-h-12-0-UI.s1 /CLONE=UI-R-BS2-bdz-h-12-0-UI /FEA=EST /CNT=7 /TID=Rn.55798.1 /TIER=ConsEnd /STK=2 /UG=Rn.55798 /UG_TITLE=ESTs BF396595 1391478_at BI281649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281649 /DB_XREF=gi:14931592 /DB_XREF=UI-R-CT0s-cau-h-03-0-UI.s1 /CLONE=UI-R-CT0s-cau-h-03-0-UI /FEA=EST /CNT=6 /TID=Rn.41476.1 /TIER=ConsEnd /STK=2 /UG=Rn.41476 /UG_TITLE=ESTs BI281649 zinc finger protein 532 Znf532 307362 NM_001107382 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1391479_at BE107968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107968 /DB_XREF=gi:8500073 /DB_XREF=UI-R-CA0-awy-h-05-0-UI.s1 /CLONE=UI-R-CA0-awy-h-05-0-UI /FEA=EST /CNT=6 /TID=Rn.54591.1 /TIER=ConsEnd /STK=2 /UG=Rn.54591 /UG_TITLE=ESTs BE107968 1391480_at BI296013 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296013 /DB_XREF=gi:14960031 /DB_XREF=UI-R-DK0-cfd-d-05-0-UI.s1 /CLONE=UI-R-DK0-cfd-d-05-0-UI /FEA=EST /CNT=6 /TID=Rn.26807.1 /TIER=ConsEnd /STK=2 /UG=Rn.26807 /UG_TITLE=ESTs BI296013 1391481_at BE104424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104424 /DB_XREF=gi:8496564 /DB_XREF=UI-R-BX0-asa-f-10-0-UI.s1 /CLONE=UI-R-BX0-asa-f-10-0-UI /FEA=EST /CNT=6 /TID=Rn.44205.1 /TIER=ConsEnd /STK=2 /UG=Rn.44205 /UG_TITLE=ESTs BE104424 1391482_a_at AI229413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229413 /DB_XREF=gi:3813300 /DB_XREF=EST226108 /CLONE=REMCG03 /FEA=EST /CNT=6 /TID=Rn.24442.1 /TIER=ConsEnd /STK=2 /UG=Rn.24442 /UG_TITLE=ESTs, Moderately similar to T00054 hypothetical protein KIAA0415 (H.sapiens) AI229413 1391483_at BF282264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282264 /DB_XREF=gi:11213448 /DB_XREF=EST446969 /CLONE=RGIDM75 /FEA=EST /CNT=6 /TID=Rn.20059.1 /TIER=ConsEnd /STK=2 /UG=Rn.20059 /UG_TITLE=ESTs BF282264 cAMP responsive element binding protein 3-like 3 Creb3l3 314638 NM_001012115 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1391484_at BF284786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284786 /DB_XREF=gi:11215856 /DB_XREF=EST449377 /CLONE=RGIEW32 /FEA=EST /CNT=6 /TID=Rn.12965.1 /TIER=ConsEnd /STK=2 /UG=Rn.12965 /UG_TITLE=ESTs BF284786 1391485_at BF290955 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290955 /DB_XREF=gi:11222025 /DB_XREF=EST455546 /CLONE=RGIIG78 /FEA=EST /CNT=6 /TID=Rn.43745.1 /TIER=ConsEnd /STK=2 /UG=Rn.43745 /UG_TITLE=ESTs BF290955 1391486_at BM388409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388409 /DB_XREF=gi:18188462 /DB_XREF=UI-R-CN1-cjn-k-15-0-UI.s1 /CLONE=UI-R-CN1-cjn-k-15-0-UI /FEA=EST /CNT=6 /TID=Rn.19658.1 /TIER=ConsEnd /STK=2 /UG=Rn.19658 /UG_TITLE=ESTs BM388409 1391487_at AI044807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044807 /DB_XREF=gi:3291626 /DB_XREF=UI-R-C1-ki-b-04-0-UI.s1 /CLONE=UI-R-C1-ki-b-04-0-UI /FEA=EST /CNT=6 /TID=Rn.22527.1 /TIER=ConsEnd /STK=2 /UG=Rn.22527 /UG_TITLE=ESTs, Highly similar to ZRF1 MOUSE ZUOTIN RELATED FACTOR-1 (M.musculus) AI044807 DnaJ (Hsp40) homolog, subfamily C, member 2 Dnajc2 116456 NM_053776 0000085 // G2 phase of mitotic cell cycle // inferred from electronic annotation /// 0000085 // G2 phase of mitotic cell cycle // not recorded /// 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation 1391488_at AI412294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412294 /DB_XREF=gi:4255798 /DB_XREF=EST240591 /CLONE=RBRDV77 /FEA=EST /CNT=5 /TID=Rn.12005.1 /TIER=ConsEnd /STK=2 /UG=Rn.12005 /UG_TITLE=ESTs AI412294 1391489_at AI407339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407339 /DB_XREF=gi:4250843 /DB_XREF=EST235628 /CLONE=ROVED79 /FEA=EST /CNT=5 /TID=Rn.20356.1 /TIER=ConsEnd /STK=2 /UG=Rn.20356 /UG_TITLE=ESTs AI407339 immunity-related GTPase family, M Irgm 303090 NM_001012007 0006914 // autophagy // inferred from electronic annotation /// 0006952 // defense response // not recorded /// 0006952 // defense response // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0000421 // autophagic vacuole membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016817 // hydrolase activity, acting on acid anhydrides // inferred from electronic annotation 1391490_at BF394332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394332 /DB_XREF=gi:11379196 /DB_XREF=UI-R-CA0-bgr-f-08-0-UI.s1 /CLONE=UI-R-CA0-bgr-f-08-0-UI /FEA=EST /CNT=5 /TID=Rn.51282.1 /TIER=ConsEnd /STK=2 /UG=Rn.51282 /UG_TITLE=ESTs BF394332 1391491_a_at BG377084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377084 /DB_XREF=gi:13301556 /DB_XREF=UI-R-CU0-buw-c-05-0-UI.s1 /CLONE=UI-R-CU0-buw-c-05-0-UI /FEA=EST /CNT=5 /TID=Rn.56076.1 /TIER=ConsEnd /STK=2 /UG=Rn.56076 /UG_TITLE=ESTs, Highly similar to UV EXCISION REPAIR PROTEIN PROTEIN RAD23 HOMOLOG B (M.musculus) BG377084 RAD23 homolog B (S. cerevisiae) Rad23b 298012 NM_001025275 0000718 // nucleotide-excision repair, DNA damage removal // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006289 // nucleotide-excision repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0003684 // damaged DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391492_at AI103493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103493 /DB_XREF=gi:3708032 /DB_XREF=EST212782 /CLONE=REMCC67 /FEA=EST /CNT=5 /TID=Rn.32915.1 /TIER=ConsEnd /STK=2 /UG=Rn.32915 /UG_TITLE=ESTs AI103493 1391493_at AI071685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071685 /DB_XREF=gi:3397900 /DB_XREF=UI-R-C1-ku-h-08-0-UI.s2 /CLONE=UI-R-C1-ku-h-08-0-UI /FEA=EST /CNT=5 /TID=Rn.24093.1 /TIER=ConsEnd /STK=2 /UG=Rn.24093 /UG_TITLE=ESTs AI071685 1391494_at AW527503 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527503 /DB_XREF=gi:7169917 /DB_XREF=UI-R-BO1-ajv-a-09-0-UI.s1 /CLONE=UI-R-BO1-ajv-a-09-0-UI /FEA=EST /CNT=5 /TID=Rn.24519.1 /TIER=ConsEnd /STK=2 /UG=Rn.24519 /UG_TITLE=ESTs AW527503 1391495_at BG671992 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671992 /DB_XREF=gi:13894091 /DB_XREF=DRNCAE11 /CLONE=DRNCAE11 /FEA=EST /CNT=5 /TID=Rn.25364.1 /TIER=ConsEnd /STK=2 /UG=Rn.25364 /UG_TITLE=ESTs BG671992 similar to RIKEN cDNA 2010012O05 RGD1311783 294012 NM_001134509 1391496_at AA819635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819635 /DB_XREF=gi:4227972 /DB_XREF=UI-R-A0-an-e-12-0-UI.s1 /CLONE=UI-R-A0-an-e-12-0-UI /FEA=EST /CNT=5 /TID=Rn.22329.1 /TIER=ConsEnd /STK=2 /UG=Rn.22329 /UG_TITLE=ESTs AA819635 polymerase (RNA) III (DNA directed) polypeptide F Polr3f 311487 NM_001107784 0006350 // transcription // inferred from electronic annotation /// 0032728 // positive regulation of interferon-beta production // not recorded /// 0045089 // positive regulation of innate immune response // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391497_at AA997515 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997515 /DB_XREF=gi:4284186 /DB_XREF=UI-R-C0-hw-g-06-0-UI.s1 /CLONE=UI-R-C0-hw-g-06-0-UI /FEA=EST /CNT=5 /TID=Rn.12730.1 /TIER=ConsEnd /STK=2 /UG=Rn.12730 /UG_TITLE=ESTs AA997515 1391498_at AI072877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072877 /DB_XREF=gi:3399071 /DB_XREF=UI-R-Y0-mc-b-03-0-UI.s1 /CLONE=UI-R-Y0-mc-b-03-0-UI /FEA=EST /CNT=5 /TID=Rn.20286.1 /TIER=ConsEnd /STK=2 /UG=Rn.20286 /UG_TITLE=ESTs AI072877 SIN3 homolog A, transcription regulator (yeast) Sin3a 363067 NM_001108761 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0006260 // DNA replication // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007568 // aging // inferred from direct assay /// 0010243 // response to organic nitrogen // inferred from direct assay /// 0034613 // cellular protein localization // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043619 // regulation of transcription from RNA polymerase II promoter in response to oxidative stress // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0051329 // interphase of mitotic cell cycle // not recorded 0000776 // kinetochore // not recorded /// 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016580 // Sin3 complex // not recorded /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0032403 // protein complex binding // inferred from direct assay 1391499_at BF551074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551074 /DB_XREF=gi:11660804 /DB_XREF=UI-R-C0-ii-g-10-0-UI.r1 /CLONE=UI-R-C0-ii-g-10-0-UI /FEA=EST /CNT=5 /TID=Rn.13180.1 /TIER=ConsEnd /STK=2 /UG=Rn.13180 /UG_TITLE=ESTs BF551074 1391500_at BF282889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282889 /DB_XREF=gi:11213959 /DB_XREF=EST447480 /CLONE=RGIDU58 /FEA=EST /CNT=5 /TID=Rn.19393.1 /TIER=ConsEnd /STK=2 /UG=Rn.19393 /UG_TITLE=ESTs BF282889 1391501_at AA851404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851404 /DB_XREF=gi:2938944 /DB_XREF=EST194172 /CLONE=RPLAG18 /FEA=EST /CNT=5 /TID=Rn.6742.1 /TIER=ConsEnd /STK=2 /UG=Rn.6742 /UG_TITLE=ESTs, Moderately similar to T42647 hypothetical protein DKFZp434A2115.1 (H.sapiens) AA851404 intraflagellar transport 80 homolog (Chlamydomonas) Ift80 295106 NM_001013911 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0005929 // cilium // not recorded /// 0005932 // microtubule basal body // inferred from electronic annotation /// 0035085 // cilium axoneme // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 1391502_at AI170453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170453 /DB_XREF=gi:3710493 /DB_XREF=EST216380 /CLONE=RLUCN63 /FEA=EST /CNT=5 /TID=Rn.28413.1 /TIER=ConsEnd /STK=2 /UG=Rn.28413 /UG_TITLE=ESTs AI170453 1391503_at BF281952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281952 /DB_XREF=gi:11213022 /DB_XREF=EST446543 /CLONE=RGIDA01 /FEA=EST /CNT=5 /TID=Rn.16346.1 /TIER=ConsEnd /STK=2 /UG=Rn.16346 /UG_TITLE=ESTs BF281952 centaurin, delta 3 Centd3 361314 XR_085668 /// XR_086079 1391504_at AI103714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103714 /DB_XREF=gi:3708233 /DB_XREF=EST213003 /CLONE=REMCF53 /FEA=EST /CNT=5 /TID=Rn.24960.1 /TIER=ConsEnd /STK=2 /UG=Rn.24960 /UG_TITLE=ESTs AI103714 1391505_x_at BI275261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275261 /DB_XREF=gi:14886936 /DB_XREF=UI-R-CX0-bwr-d-11-0-UI.s1 /CLONE=UI-R-CX0-bwr-d-11-0-UI /FEA=EST /CNT=5 /TID=Rn.24928.1 /TIER=ConsEnd /STK=2 /UG=Rn.24928 /UG_TITLE=ESTs BI275261 1391506_at BF400815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400815 /DB_XREF=gi:11388830 /DB_XREF=UI-R-CA0-bhg-e-12-0-UI.s1 /CLONE=UI-R-CA0-bhg-e-12-0-UI /FEA=EST /CNT=5 /TID=Rn.55076.1 /TIER=ConsEnd /STK=2 /UG=Rn.55076 /UG_TITLE=ESTs BF400815 PHD finger protein 17 Phf17 310352 NM_001107670 0043966 // histone H3 acetylation // not recorded /// 0043981 // histone H4-K5 acetylation // not recorded /// 0043982 // histone H4-K8 acetylation // not recorded /// 0043983 // histone H4-K12 acetylation // not recorded /// 0043984 // histone H4-K16 acetylation // not recorded 0000123 // histone acetyltransferase complex // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391507_at BF417765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417765 /DB_XREF=gi:11405754 /DB_XREF=UI-R-CN0-blr-h-08-0-UI.s1 /CLONE=UI-R-CN0-blr-h-08-0-UI /FEA=EST /CNT=5 /TID=Rn.27249.1 /TIER=ConsEnd /STK=2 /UG=Rn.27249 /UG_TITLE=ESTs BF417765 zinc finger protein 467 Znf467 500110 NM_001024327 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391508_at AI011730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011730 /DB_XREF=gi:3225562 /DB_XREF=EST206181 /CLONE=ROVAZ44 /FEA=EST /CNT=5 /TID=Rn.40283.1 /TIER=ConsEnd /STK=2 /UG=Rn.40283 /UG_TITLE=ESTs AI011730 1391509_at AA891826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891826 /DB_XREF=gi:3018705 /DB_XREF=EST195629 /CLONE=RKIAH30 /FEA=EST /CNT=5 /TID=Rn.24809.1 /TIER=ConsEnd /STK=2 /UG=Rn.24809 /UG_TITLE=ESTs AA891826 tumor-associated calcium signal transducer 2 Tacstd2 494343 NM_001009540 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1391510_at BF398331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398331 /DB_XREF=gi:11383320 /DB_XREF=UI-R-BS2-bey-d-07-0-UI.s1 /CLONE=UI-R-BS2-bey-d-07-0-UI /FEA=EST /CNT=5 /TID=Rn.64132.2 /TIER=ConsEnd /STK=2 /UG=Rn.64132 /UG_TITLE=ESTs, Highly similar to cancer associated surface antigen (H.sapiens) BF398331 estrogen receptor binding site associated, antigen, 9 Ebag9 299864 NM_001009665 0006915 // apoptosis // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // not recorded /// 0005925 // focal adhesion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay 0005515 // protein binding // inferred from physical interaction 1391511_at AA997877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997877 /DB_XREF=gi:4285954 /DB_XREF=UI-R-C0-hu-f-12-0-UI.s1 /CLONE=UI-R-C0-hu-f-12-0-UI /FEA=EST /CNT=5 /TID=Rn.12797.1 /TIER=ConsEnd /STK=2 /UG=Rn.12797 /UG_TITLE=ESTs AA997877 1391512_at AI029734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029734 /DB_XREF=gi:4300602 /DB_XREF=UI-R-C0-jg-c-06-0-UI.s1 /CLONE=UI-R-C0-jg-c-06-0-UI /FEA=EST /CNT=5 /TID=Rn.18311.1 /TIER=ConsEnd /STK=2 /UG=Rn.18311 /UG_TITLE=ESTs AI029734 Myotubularin related protein 1 Mtmr1 317296 NM_001191725 /// XM_001059230 /// XM_228644 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded 0004438 // phosphatidylinositol-3-phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1391513_at BE110237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110237 /DB_XREF=gi:8502342 /DB_XREF=UI-R-CA0-axk-f-09-0-UI.s1 /CLONE=UI-R-CA0-axk-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.38952.1 /TIER=ConsEnd /STK=2 /UG=Rn.38952 /UG_TITLE=ESTs BE110237 Leucine rich repeat containing 40 Lrrc40 310946 NM_001034926 0005515 // protein binding // inferred from electronic annotation 1391514_at AI575440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575440 /DB_XREF=gi:4559816 /DB_XREF=UI-R-Y0-vg-d-09-0-UI.s1 /CLONE=UI-R-Y0-vg-d-09-0-UI /FEA=EST /CNT=5 /TID=Rn.18733.1 /TIER=ConsEnd /STK=2 /UG=Rn.18733 /UG_TITLE=ESTs AI575440 1391515_at AW916135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916135 /DB_XREF=gi:8081853 /DB_XREF=EST347439 /CLONE=RGIDI48 /FEA=EST /CNT=5 /TID=Rn.23074.1 /TIER=ConsEnd /STK=2 /UG=Rn.23074 /UG_TITLE=ESTs AW916135 1391516_at AI058429 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058429 /DB_XREF=gi:3332206 /DB_XREF=UI-R-C1-kn-d-08-0-UI.s1 /CLONE=UI-R-C1-kn-d-08-0-UI /FEA=EST /CNT=5 /TID=Rn.22548.1 /TIER=ConsEnd /STK=2 /UG=Rn.22548 /UG_TITLE=ESTs AI058429 up-regulator of carnitine transporter, OCTN2 LOC303140 303140 XM_001073573 /// XM_220427 0055085 // transmembrane transport // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1391517_at AA996927 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996927 /DB_XREF=gi:4280691 /DB_XREF=UI-R-C0-hj-g-01-0-UI.s1 /CLONE=UI-R-C0-hj-g-01-0-UI /FEA=EST /CNT=5 /TID=Rn.23264.1 /TIER=ConsEnd /STK=2 /UG=Rn.23264 /UG_TITLE=ESTs AA996927 1391518_at AI579823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI579823 /DB_XREF=gi:4564199 /DB_XREF=UI-R-AD0-wg-f-02-0-UI.s2 /CLONE=UI-R-AD0-wg-f-02-0-UI /FEA=EST /CNT=5 /TID=Rn.51.1 /TIER=ConsEnd /STK=2 /UG=Rn.51 /UG_TITLE=ESTs AI579823 hypothetical protein LOC689399 LOC689399 689399 XM_001070657 /// XM_002725457 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1391519_at AI011497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011497 /DB_XREF=gi:4133433 /DB_XREF=EST205948 /CLONE=ROVAV72 /FEA=EST /CNT=5 /TID=Rn.20671.1 /TIER=ConsEnd /STK=2 /UG=Rn.20671 /UG_TITLE=ESTs AI011497 formin 1 Fmn1 296512 XM_002726209 /// XM_231006 0010467 // gene expression // not recorded /// 0016043 // cellular component organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // not recorded /// 0035136 // forelimb morphogenesis // not recorded /// 0035137 // hindlimb morphogenesis // not recorded /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // not recorded /// 0051127 // positive regulation of actin nucleation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017124 // SH3 domain binding // not recorded 1391520_at BE109256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109256 /DB_XREF=gi:8501361 /DB_XREF=UI-R-BS1-azd-f-12-0-UI.s1 /CLONE=UI-R-BS1-azd-f-12-0-UI /FEA=EST /CNT=5 /TID=Rn.34510.1 /TIER=ConsEnd /STK=2 /UG=Rn.34510 /UG_TITLE=ESTs BE109256 1391521_at AA858748 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858748 /DB_XREF=gi:4228941 /DB_XREF=UI-R-A0-bb-e-02-0-UI.s1 /CLONE=UI-R-A0-bb-e-02-0-UI /FEA=EST /CNT=5 /TID=Rn.16889.1 /TIER=ConsEnd /STK=2 /UG=Rn.16889 /UG_TITLE=ESTs AA858748 1391522_at AI044682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044682 /DB_XREF=gi:3291543 /DB_XREF=UI-R-C1-kd-b-01-0-UI.s1 /CLONE=UI-R-C1-kd-b-01-0-UI /FEA=EST /CNT=5 /TID=Rn.22405.1 /TIER=ConsEnd /STK=2 /UG=Rn.22405 /UG_TITLE=ESTs AI044682 BR serine/threonine kinase 2 Brsk2 293631 XM_001063734 /// XM_219498 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006974 // response to DNA damage stimulus // inferred from sequence or structural similarity /// 0009411 // response to UV // inferred from sequence or structural similarity /// 0010212 // response to ionizing radiation // inferred from sequence or structural similarity /// 0030010 // establishment of cell polarity // not recorded /// 0030182 // neuron differentiation // not recorded /// 0031572 // G2/M transition DNA damage checkpoint // inferred from sequence or structural similarity 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1391523_at AA955605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955605 /DB_XREF=gi:4238000 /DB_XREF=UI-R-E1-fb-a-03-0-UI.s1 /CLONE=UI-R-E1-fb-a-03-0-UI /FEA=EST /CNT=5 /TID=Rn.8868.1 /TIER=ConsEnd /STK=2 /UG=Rn.8868 /UG_TITLE=ESTs AA955605 1391524_at BE107185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107185 /DB_XREF=gi:8499290 /DB_XREF=UI-R-BS1-ayq-h-03-0-UI.s1 /CLONE=UI-R-BS1-ayq-h-03-0-UI /FEA=EST /CNT=5 /TID=Rn.23174.1 /TIER=ConsEnd /STK=2 /UG=Rn.23174 /UG_TITLE=ESTs BE107185 similar to WD repeat domain 11 protein RGD1564964 315843 NM_001134564 1391525_at AW141615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141615 /DB_XREF=gi:6161423 /DB_XREF=EST291679 /CLONE=RGICB10 /FEA=EST /CNT=5 /TID=Rn.22925.1 /TIER=ConsEnd /STK=2 /UG=Rn.22925 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) AW141615 1391526_at AI029006 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029006 /DB_XREF=gi:4295574 /DB_XREF=UI-R-C0-io-f-03-0-UI.s1 /CLONE=UI-R-C0-io-f-03-0-UI /FEA=EST /CNT=5 /TID=Rn.7029.1 /TIER=ConsEnd /STK=2 /UG=Rn.7029 /UG_TITLE=ESTs AI029006 kinesin family member 16B Kif16b 311478 NM_001107783 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1391527_at BE109296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109296 /DB_XREF=gi:8501401 /DB_XREF=UI-R-BJ1-auq-c-04-0-UI.s1 /CLONE=UI-R-BJ1-auq-c-04-0-UI /FEA=EST /CNT=5 /TID=Rn.53955.1 /TIER=ConsEnd /STK=2 /UG=Rn.53955 /UG_TITLE=ESTs BE109296 Ngfi-A binding protein 2 Nab2 314910 NM_001134874 0001958 // endochondral ossification // not recorded /// 0014037 // Schwann cell differentiation // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0042552 // myelination // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045682 // regulation of epidermis development // not recorded 0005634 // nucleus // inferred from electronic annotation 0016564 // transcription repressor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded 1391528_at AA858509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858509 /DB_XREF=gi:4229842 /DB_XREF=UI-R-E0-bo-d-05-0-UI.s1 /CLONE=UI-R-E0-bo-d-05-0-UI /FEA=EST /CNT=5 /TID=Rn.17024.1 /TIER=ConsEnd /STK=2 /UG=Rn.17024 /UG_TITLE=ESTs AA858509 ADNP homeobox 2 Adnp2 307236 NM_001127373 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1391529_at AI073125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073125 /DB_XREF=gi:3399319 /DB_XREF=UI-R-Y0-mb-h-04-0-UI.s1 /CLONE=UI-R-Y0-mb-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.35145.1 /TIER=ConsEnd /STK=2 /UG=Rn.35145 /UG_TITLE=ESTs AI073125 glutathione peroxidase 4 Gpx4 29328 NM_001039849 /// NM_017165 0006325 // chromatin organization // not recorded /// 0006325 // chromatin organization // inferred from sequence or structural similarity /// 0006325 // chromatin organization // inferred from electronic annotation /// 0006749 // glutathione metabolic process // inferred from direct assay /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007283 // spermatogenesis // inferred from sequence or structural similarity /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0042744 // hydrogen peroxide catabolic process // inferred from direct assay /// 0050727 // regulation of inflammatory response // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0004601 // peroxidase activity // inferred from electronic annotation /// 0004602 // glutathione peroxidase activity // inferred from direct assay /// 0004602 // glutathione peroxidase activity // not recorded /// 0004602 // glutathione peroxidase activity // inferred from sequence or structural similarity /// 0004602 // glutathione peroxidase activity // inferred from electronic annotation /// 0008430 // selenium binding // inferred from direct assay /// 0008430 // selenium binding // inferred from mutant phenotype /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0043295 // glutathione binding // inferred from direct assay /// 0047066 // phospholipid-hydroperoxide glutathione peroxidase activity // inferred from direct assay /// 0047066 // phospholipid-hydroperoxide glutathione peroxidase activity // inferred from electronic annotation 1391530_a_at BI291880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291880 /DB_XREF=gi:14951837 /DB_XREF=UI-R-DN0-ciu-e-11-0-UI.s1 /CLONE=UI-R-DN0-ciu-e-11-0-UI /FEA=EST /CNT=5 /TID=Rn.24121.1 /TIER=ConsEnd /STK=2 /UG=Rn.24121 /UG_TITLE=ESTs, Weakly similar to FAS RAT FATTY ACID SYNTHASE (R.norvegicus) BI291880 3-oxoacyl-ACP synthase, mitochondrial Oxsm 289934 NM_001100508 0006637 // acyl-CoA metabolic process // inferred from electronic annotation /// 0006637 // acyl-CoA metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0051790 // short-chain fatty acid biosynthetic process // inferred from electronic annotation /// 0051790 // short-chain fatty acid biosynthetic process // not recorded /// 0051792 // medium-chain fatty acid biosynthetic process // inferred from electronic annotation /// 0051792 // medium-chain fatty acid biosynthetic process // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004315 // 3-oxoacyl-[acyl-carrier-protein] synthase activity // inferred from electronic annotation /// 0004315 // 3-oxoacyl-[acyl-carrier-protein] synthase activity // not recorded 1391531_at BF561981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561981 /DB_XREF=gi:11671711 /DB_XREF=UI-R-E1-fx-g-07-0-UI.r1 /CLONE=UI-R-E1-fx-g-07-0-UI /FEA=EST /CNT=5 /TID=Rn.22105.1 /TIER=ConsEnd /STK=2 /UG=Rn.22105 /UG_TITLE=ESTs BF561981 similar to spermatogenesis associated 5-like 1 LOC691729 691729 NM_001109647 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1391532_at AI535169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535169 /DB_XREF=gi:4449304 /DB_XREF=UI-R-C3-sq-d-06-0-UI.s1 /CLONE=UI-R-C3-sq-d-06-0-UI /FEA=EST /CNT=5 /TID=Rn.34765.1 /TIER=ConsEnd /STK=2 /UG=Rn.34765 /UG_TITLE=ESTs, Moderately similar to Rap2 interacting protein 8 (M.musculus) AI535169 Rap2 interacting protein Rap2ip 303569 NM_198758 0030828 // positive regulation of cGMP biosynthetic process // inferred from direct assay /// 0071445 // cellular response to protein stimulus // inferred from expression pattern 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay 0030250 // guanylate cyclase activator activity // inferred from direct assay /// 0051428 // peptide hormone receptor binding // inferred from physical interaction 1391533_at AI058978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058978 /DB_XREF=gi:3332755 /DB_XREF=UI-R-C1-lq-a-10-0-UI.s1 /CLONE=UI-R-C1-lq-a-10-0-UI /FEA=EST /CNT=5 /TID=Rn.14711.1 /TIER=ConsEnd /STK=2 /UG=Rn.14711 /UG_TITLE=ESTs, Weakly similar to S68513 thyroid iodide transport protein - rat (R.norvegicus) AI058978 solute carrier family 5 (sodium/glucose cotransporter), member 12 Slc5a12 362188 NM_001108588 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1391534_at BG666735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666735 /DB_XREF=gi:13888657 /DB_XREF=DRABUE12 /CLONE=DRABUE12 /FEA=EST /CNT=8 /TID=Rn.45201.1 /TIER=ConsEnd /STK=2 /UG=Rn.45201 /UG_TITLE=ESTs BG666735 elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2 Elovl2 498728 NM_001109118 0016021 // integral to membrane // inferred from electronic annotation 1391535_at BF284610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284610 /DB_XREF=gi:11215680 /DB_XREF=EST449201 /CLONE=RGIES81 /FEA=EST /CNT=7 /TID=Rn.17646.1 /TIER=ConsEnd /STK=2 /UG=Rn.17646 /UG_TITLE=ESTs BF284610 1391536_at AA892645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892645 /DB_XREF=gi:3019524 /DB_XREF=EST196448 /CLONE=RKIAV28 /FEA=EST /CNT=6 /TID=Rn.48994.1 /TIER=ConsEnd /STK=2 /UG=Rn.48994 /UG_TITLE=ESTs, Weakly similar to T32650 hypothetical protein F39C12.1 - Caenorhabditis elegans (C.elegans) AA892645 missing oocyte, meiosis regulator, homolog (Drosophila) Mios 362324 NM_001173554 /// XM_001055421 /// XM_342642 1391537_at AW251654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251654 /DB_XREF=gi:6595245 /DB_XREF=UI-R-BJ0-adp-c-08-0-UI.s1 /CLONE=UI-R-BJ0-adp-c-08-0-UI /FEA=EST /CNT=6 /TID=Rn.31508.1 /TIER=ConsEnd /STK=2 /UG=Rn.31508 /UG_TITLE=ESTs AW251654 SERTA domain containing 4 Sertad4 360899 NM_001108351 0005515 // protein binding // not recorded 1391538_at AI137938 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137938 /DB_XREF=gi:3638715 /DB_XREF=UI-R-A1-dz-a-02-0-UI.s1 /CLONE=UI-R-A1-dz-a-02-0-UI /FEA=EST /CNT=6 /TID=Rn.27537.1 /TIER=ConsEnd /STK=2 /UG=Rn.27537 /UG_TITLE=ESTs, Highly similar to CIDB_MOUSE CELL DEATH ACTIVATOR CIDE-B (CELL DEATH-INDUCING DFFA-LIKE EFFECTOR B) (M.musculus) AI137938 cell death-inducing DFFA-like effector b Cideb 364388 NM_001108869 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation 1391539_at BI291849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291849 /DB_XREF=gi:14951792 /DB_XREF=UI-R-DN0-cit-p-14-0-UI.s1 /CLONE=UI-R-DN0-cit-p-14-0-UI /FEA=EST /CNT=6 /TID=Rn.49247.1 /TIER=ConsEnd /STK=2 /UG=Rn.49247 /UG_TITLE=ESTs BI291849 1391540_at BE107120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107120 /DB_XREF=gi:8499225 /DB_XREF=UI-R-BS1-ayq-a-12-0-UI.s1 /CLONE=UI-R-BS1-ayq-a-12-0-UI /FEA=EST /CNT=6 /TID=Rn.44003.1 /TIER=ConsEnd /STK=2 /UG=Rn.44003 /UG_TITLE=ESTs BE107120 1391541_at BF401158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401158 /DB_XREF=gi:11389133 /DB_XREF=UI-R-CA0-bgj-c-08-0-UI.s1 /CLONE=UI-R-CA0-bgj-c-08-0-UI /FEA=EST /CNT=6 /TID=Rn.34081.1 /TIER=ConsEnd /STK=2 /UG=Rn.34081 /UG_TITLE=ESTs BF401158 1391542_at BF291191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291191 /DB_XREF=gi:11222261 /DB_XREF=EST455782 /CLONE=RGIIJ92 /FEA=EST /CNT=5 /TID=Rn.43268.1 /TIER=ConsEnd /STK=2 /UG=Rn.43268 /UG_TITLE=ESTs BF291191 1391543_at BF406678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406678 /DB_XREF=gi:11394653 /DB_XREF=UI-R-BJ2-bpv-h-02-0-UI.s1 /CLONE=UI-R-BJ2-bpv-h-02-0-UI /FEA=EST /CNT=5 /TID=Rn.32260.1 /TIER=ConsEnd /STK=2 /UG=Rn.32260 /UG_TITLE=ESTs, Highly similar to SERINETHREONINE PROTEIN KINASE RIP (M.musculus) BF406678 receptor (TNFRSF)-interacting serine-threonine kinase 1 Ripk1 306886 NM_001107350 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0010940 // positive regulation of necrotic cell death // not recorded /// 0034612 // response to tumor necrosis factor // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0046777 // protein autophosphorylation // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051291 // protein heterooligomerization // inferred from physical interaction /// 0060555 // induction of necroptosis by extracellular signals // not recorded /// 0070926 // regulation of ATP:ADP antiporter activity // not recorded 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded /// 0031264 // death-inducing signaling complex // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0043235 // receptor complex // not recorded /// 0045121 // membrane raft // inferred from direct assay 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005123 // death receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0070513 // death domain binding // not recorded 1391544_at BI285941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285941 /DB_XREF=gi:14940094 /DB_XREF=UI-R-CX0s-ccp-f-02-0-UI.s1 /CLONE=UI-R-CX0s-ccp-f-02-0-UI /FEA=EST /CNT=5 /TID=Rn.74079.1 /TIER=ConsEnd /STK=2 /UG=Rn.74079 /UG_TITLE=ESTs BI285941 1391545_at AI409150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409150 /DB_XREF=gi:4252654 /DB_XREF=EST237442 /CLONE=RKIDR68 /FEA=EST /CNT=5 /TID=Rn.26896.1 /TIER=ConsEnd /STK=2 /UG=Rn.26896 /UG_TITLE=ESTs AI409150 coiled-coil domain containing 52 Ccdc52 288111 NM_001008285 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005814 // centriole // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391546_at AI412209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412209 /DB_XREF=gi:4255713 /DB_XREF=EST240504 /CLONE=RBRDY43 /FEA=EST /CNT=5 /TID=Rn.45010.1 /TIER=ConsEnd /STK=2 /UG=Rn.45010 /UG_TITLE=ESTs AI412209 potassium voltage-gated channel, KQT-like subfamily, member 2 Kcnq2 170848 NM_133322 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from physical interaction 1391547_at AI045669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045669 /DB_XREF=gi:3292488 /DB_XREF=UI-R-C0-jg-b-01-0-UI.s2 /CLONE=UI-R-C0-jg-b-01-0-UI /FEA=EST /CNT=5 /TID=Rn.16287.1 /TIER=ConsEnd /STK=2 /UG=Rn.16287 /UG_TITLE=ESTs AI045669 1391548_at AA955786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955786 /DB_XREF=gi:4238181 /DB_XREF=UI-R-E1-fg-d-01-0-UI.s1 /CLONE=UI-R-E1-fg-d-01-0-UI /FEA=EST /CNT=5 /TID=Rn.23114.1 /TIER=ConsEnd /STK=2 /UG=Rn.23114 /UG_TITLE=ESTs AA955786 1391549_at BF288456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288456 /DB_XREF=gi:11219526 /DB_XREF=EST453047 /CLONE=RGIGU04 /FEA=EST /CNT=5 /TID=Rn.45802.1 /TIER=ConsEnd /STK=2 /UG=Rn.45802 /UG_TITLE=ESTs BF288456 DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae) Dcun1d4 360928 NM_001108359 1391550_at BE108780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108780 /DB_XREF=gi:8500885 /DB_XREF=UI-R-BS1-ayy-d-02-0-UI.s1 /CLONE=UI-R-BS1-ayy-d-02-0-UI /FEA=EST /CNT=5 /TID=Rn.21743.1 /TIER=ConsEnd /STK=2 /UG=Rn.21743 /UG_TITLE=ESTs BE108780 Rad54 like 2 (S. cerevisiae) Rad54l2 363135 NM_001134520 0045449 // regulation of transcription // not recorded 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003712 // transcription cofactor activity // not recorded /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded 1391551_at BM391857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391857 /DB_XREF=gi:18191910 /DB_XREF=UI-R-DO1-cmk-j-04-0-UI.s1 /CLONE=UI-R-DO1-cmk-j-04-0-UI /FEA=EST /CNT=5 /TID=Rn.33573.1 /TIER=ConsEnd /STK=2 /UG=Rn.33573 /UG_TITLE=ESTs BM391857 1391552_at BM391661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391661 /DB_XREF=gi:18191714 /DB_XREF=UI-R-CN1-cjs-o-20-0-UI.s1 /CLONE=UI-R-CN1-cjs-o-20-0-UI /FEA=EST /CNT=5 /TID=Rn.25189.1 /TIER=ConsEnd /STK=2 /UG=Rn.25189 /UG_TITLE=ESTs BM391661 1391553_at AA956757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956757 /DB_XREF=gi:4239231 /DB_XREF=UI-R-E1-fr-e-02-0-UI.s1 /CLONE=UI-R-E1-fr-e-02-0-UI /FEA=EST /CNT=5 /TID=Rn.23136.1 /TIER=ConsEnd /STK=2 /UG=Rn.23136 /UG_TITLE=ESTs AA956757 1391554_at BE113319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113319 /DB_XREF=gi:8505389 /DB_XREF=UI-R-BJ1-awd-f-06-0-UI.s1 /CLONE=UI-R-BJ1-awd-f-06-0-UI /FEA=EST /CNT=5 /TID=Rn.48305.1 /TIER=ConsEnd /STK=2 /UG=Rn.48305 /UG_TITLE=ESTs BE113319 1391555_at BI276668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276668 /DB_XREF=gi:14921798 /DB_XREF=UI-R-CX0-bxj-a-06-0-UI.s1 /CLONE=UI-R-CX0-bxj-a-06-0-UI /FEA=EST /CNT=5 /TID=Rn.20691.1 /TIER=ConsEnd /STK=2 /UG=Rn.20691 /UG_TITLE=ESTs BI276668 1391556_at AW524218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524218 /DB_XREF=gi:7166603 /DB_XREF=UI-R-BO0-aii-g-10-0-UI.s1 /CLONE=UI-R-BO0-aii-g-10-0-UI /FEA=EST /CNT=5 /TID=Rn.43151.1 /TIER=ConsEnd /STK=2 /UG=Rn.43151 /UG_TITLE=ESTs, Highly similar to SM5A MOUSE SEMAPHORIN 5A PRECURSOR (M.musculus) AW524218 sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A Sema5a 310207 NM_001107659 0001569 // patterning of blood vessels // not recorded /// 0007165 // signal transduction // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0048754 // branching morphogenesis of a tube // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0008046 // axon guidance receptor activity // not recorded 1391557_at AI009685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009685 /DB_XREF=gi:3223517 /DB_XREF=EST204136 /CLONE=RLUBN25 /FEA=EST /CNT=5 /TID=Rn.17468.1 /TIER=ConsEnd /STK=2 /UG=Rn.17468 /UG_TITLE=ESTs, Weakly similar to S19597 hypothetical protein - rat (R.norvegicus) AI009685 SRY (sex determining region Y)-box 15 Sox15 363632 NM_001108830 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0030154 // cell differentiation // not recorded /// 0043403 // skeletal muscle tissue regeneration // not recorded /// 0045843 // negative regulation of striated muscle tissue development // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048627 // myoblast development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // not recorded 1391558_at BF290997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290997 /DB_XREF=gi:11222067 /DB_XREF=EST455588 /CLONE=RGIIH33 /FEA=EST /CNT=5 /TID=Rn.24694.1 /TIER=ConsEnd /STK=2 /UG=Rn.24694 /UG_TITLE=ESTs BF290997 zinc finger protein 608 Znf608 307296 NM_001107378 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1391559_at AW525904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525904 /DB_XREF=gi:7168289 /DB_XREF=UI-R-BO1-aiw-b-04-0-UI.s1 /CLONE=UI-R-BO1-aiw-b-04-0-UI /FEA=EST /CNT=4 /TID=Rn.44149.1 /TIER=ConsEnd /STK=2 /UG=Rn.44149 /UG_TITLE=ESTs, Weakly similar to T23273 hypothetical protein Y63D3A.8 - Caenorhabditis elegans (C.elegans) AW525904 TLC domain containing 1 Tlcd1 287472 NM_001013858 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1391560_at AI237082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237082 /DB_XREF=gi:3830588 /DB_XREF=EST233644 /CLONE=ROVDO47 /FEA=EST /CNT=4 /TID=Rn.47659.1 /TIER=ConsEnd /STK=2 /UG=Rn.47659 /UG_TITLE=ESTs, Highly similar to S22293 zinc finger protein AT-BP2 - rat (R.norvegicus) AI237082 human immunodeficiency virus type I enhancer binding protein 1 Hivep1 117140 NM_001105751 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // non-traceable author statement /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // not recorded /// 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded 1391561_at BE108893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108893 /DB_XREF=gi:8500998 /DB_XREF=UI-R-BS1-ayz-f-03-0-UI.s1 /CLONE=UI-R-BS1-ayz-f-03-0-UI /FEA=EST /CNT=4 /TID=Rn.13796.1 /TIER=ConsEnd /STK=2 /UG=Rn.13796 /UG_TITLE=ESTs BE108893 1391562_at AI598473 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598473 /DB_XREF=gi:4607521 /DB_XREF=EST250176 /CLONE=REMDR36 /FEA=EST /CNT=4 /TID=Rn.40470.1 /TIER=ConsEnd /STK=2 /UG=Rn.40470 /UG_TITLE=ESTs AI598473 1391563_at AA963184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963184 /DB_XREF=gi:4278108 /DB_XREF=UI-R-E1-gh-c-09-0-UI.s1 /CLONE=UI-R-E1-gh-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.12231.1 /TIER=ConsEnd /STK=2 /UG=Rn.12231 /UG_TITLE=ESTs AA963184 melanoma associated antigen (mutated) 1-like 1 Mum1l1 501630 NM_001109321 1391564_at AW526015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526015 /DB_XREF=gi:7168400 /DB_XREF=UI-R-BO1-aiy-c-09-0-UI.s1 /CLONE=UI-R-BO1-aiy-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.46062.1 /TIER=ConsEnd /STK=2 /UG=Rn.46062 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) AW526015 zinc finger protein 426-like 2 Zfp426l2 363022 NM_001134585 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391565_at AA899663 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899663 /DB_XREF=gi:4232160 /DB_XREF=UI-R-E0-cy-a-11-0-UI.s1 /CLONE=UI-R-E0-cy-a-11-0-UI /FEA=EST /CNT=4 /TID=Rn.31825.1 /TIER=ConsEnd /STK=2 /UG=Rn.31825 /UG_TITLE=ESTs AA899663 large subunit GTPase 1 homolog (S. cerevisiae) Lsg1 288029 NM_001013421 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0051168 // nuclear export // not recorded /// 0051168 // nuclear export // inferred from sequence or structural similarity /// 0051168 // nuclear export // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0015030 // Cajal body // not recorded /// 0015030 // Cajal body // inferred from sequence or structural similarity /// 0015030 // Cajal body // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation 1391566_at AA818977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818977 /DB_XREF=gi:4227644 /DB_XREF=UI-R-A0-as-g-12-0-UI.s1 /CLONE=UI-R-A0-as-g-12-0-UI /FEA=EST /CNT=4 /TID=Rn.23169.1 /TIER=ConsEnd /STK=2 /UG=Rn.23169 /UG_TITLE=ESTs AA818977 1391567_at AI502150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502150 /DB_XREF=gi:4400001 /DB_XREF=UI-R-C2p-rx-f-08-0-UI.s2 /CLONE=UI-R-C2p-rx-f-08-0-UI /FEA=EST /CNT=4 /TID=Rn.35366.1 /TIER=ConsEnd /STK=2 /UG=Rn.35366 /UG_TITLE=ESTs AI502150 1391568_at AI228711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228711 /DB_XREF=gi:3812598 /DB_XREF=EST225406 /CLONE=RBRCY45 /FEA=EST /CNT=4 /TID=Rn.44096.1 /TIER=ConsEnd /STK=2 /UG=Rn.44096 /UG_TITLE=ESTs AI228711 1391569_at BF406435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406435 /DB_XREF=gi:11394410 /DB_XREF=UI-R-CA1-bjf-p-14-0-UI.s1 /CLONE=UI-R-CA1-bjf-p-14-0-UI /FEA=EST /CNT=4 /TID=Rn.64347.1 /TIER=ConsEnd /STK=2 /UG=Rn.64347 /UG_TITLE=ESTs, Weakly similar to BE16 MOUSE BRAIN PROTEIN E161 (M.musculus) BF406435 1391570_at AI105070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105070 /DB_XREF=gi:3705112 /DB_XREF=EST214359 /CLONE=RHECN26 /FEA=EST /CNT=4 /TID=Rn.39037.1 /TIER=ConsEnd /STK=2 /UG=Rn.39037 /UG_TITLE=ESTs, Weakly similar to ADVL_MOUSE ADVILLIN (P92) (ACTIN-BINDING PROTEIN DOC6) (M.musculus) AI105070 actin-binding LIM protein 3 Ablim3 307395 NM_001191698 /// XM_001058944 /// XM_225889 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1391571_at BG666079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666079 /DB_XREF=gi:13888001 /DB_XREF=DRACNC06 /CLONE=DRACNC06 /FEA=EST /CNT=4 /TID=Rn.45627.1 /TIER=ConsEnd /STK=2 /UG=Rn.45627 /UG_TITLE=ESTs BG666079 1391572_at BE109168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109168 /DB_XREF=gi:8501273 /DB_XREF=UI-R-BS1-azb-f-12-0-UI.s1 /CLONE=UI-R-BS1-azb-f-12-0-UI /FEA=EST /CNT=4 /TID=Rn.23122.2 /TIER=ConsEnd /STK=2 /UG=Rn.23122 /UG_TITLE=ESTs, Highly similar to SYC_HUMAN CYSTEINYL-TRNA SYNTHETASE (H.sapiens) BE109168 cysteinyl-tRNA synthetase Cars 293638 NM_001106319 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006423 // cysteinyl-tRNA aminoacylation // inferred from electronic annotation /// 0006423 // cysteinyl-tRNA aminoacylation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0000049 // tRNA binding // not recorded /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004817 // cysteine-tRNA ligase activity // inferred from electronic annotation /// 0004817 // cysteine-tRNA ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1391573_at AA891842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891842 /DB_XREF=gi:3018721 /DB_XREF=EST195645 /CLONE=RKIAH53 /FEA=EST /CNT=4 /TID=Rn.48853.1 /TIER=ConsEnd /STK=2 /UG=Rn.48853 /UG_TITLE=ESTs AA891842 tumor necrosis factor receptor superfamily, member 21 Tnfrsf21 316256 NM_001108207 0007165 // signal transduction // inferred from electronic annotation /// 0051402 // neuron apoptosis // not recorded 0030424 // axon // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391574_at AW253369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253369 /DB_XREF=gi:6596960 /DB_XREF=UI-R-BJ0-aen-b-04-0-UI.s1 /CLONE=UI-R-BJ0-aen-b-04-0-UI /FEA=EST /CNT=4 /TID=Rn.23831.1 /TIER=ConsEnd /STK=2 /UG=Rn.23831 /UG_TITLE=ESTs AW253369 1391575_at BG380566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380566 /DB_XREF=gi:13305038 /DB_XREF=UI-R-CT0-bty-g-10-0-UI.s1 /CLONE=UI-R-CT0-bty-g-10-0-UI /FEA=EST /CNT=4 /TID=Rn.51293.1 /TIER=ConsEnd /STK=2 /UG=Rn.51293 /UG_TITLE=ESTs, Weakly similar to LKRT2 proteoglycan link protein 2 precursor - rat (R.norvegicus) BG380566 hyaluronan and proteoglycan link protein 4 Hapln4 361129 NM_001108398 0007155 // cell adhesion // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // inferred from electronic annotation 1391576_at AI112211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112211 /DB_XREF=gi:3512160 /DB_XREF=UI-R-Y0-ml-h-11-0-UI.s1 /CLONE=UI-R-Y0-ml-h-11-0-UI /FEA=EST /CNT=4 /TID=Rn.43732.1 /TIER=ConsEnd /STK=2 /UG=Rn.43732 /UG_TITLE=ESTs AI112211 1391577_at BI293450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293450 /DB_XREF=gi:14954955 /DB_XREF=UI-R-DK0-cdq-f-05-0-UI.s1 /CLONE=UI-R-DK0-cdq-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.23489.2 /TIER=ConsEnd /STK=2 /UG=Rn.23489 /UG_TITLE=ESTs BI293450 phosphoglycerate mutase family member 5 Pgam5 288731 NM_001025272 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1391578_at BF397936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397936 /DB_XREF=gi:11382921 /DB_XREF=UI-R-BS2-bef-d-05-0-UI.s1 /CLONE=UI-R-BS2-bef-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.37591.1 /TIER=ConsEnd /STK=2 /UG=Rn.37591 /UG_TITLE=ESTs, Weakly similar to ataxin 2 binding protein 1; ataxin 2-binding protein 1 (Mus musculus) (M.musculus) BF397936 similar to modulator of estrogen induced transcription RGD1307526 315792 XR_005468 /// XR_009637 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1391579_at AI385229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385229 /DB_XREF=gi:4198011 /DB_XREF=UI-R-E0-cx-g-10-0-UI.s1 /CLONE=UI-R-E0-cx-g-10-0-UI /FEA=EST /CNT=4 /TID=Rn.34078.1 /TIER=ConsEnd /STK=2 /UG=Rn.34078 /UG_TITLE=ESTs AI385229 1391580_at AI234123 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234123 /DB_XREF=gi:3818003 /DB_XREF=EST230811 /CLONE=RLUCV47 /FEA=EST /CNT=4 /TID=Rn.42859.1 /TIER=ConsEnd /STK=2 /UG=Rn.42859 /UG_TITLE=ESTs AI234123 1391581_at BE104302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104302 /DB_XREF=gi:8496402 /DB_XREF=UI-R-BX0-arn-b-12-0-UI.s1 /CLONE=UI-R-BX0-arn-b-12-0-UI /FEA=EST /CNT=4 /TID=Rn.50623.1 /TIER=ConsEnd /STK=2 /UG=Rn.50623 /UG_TITLE=ESTs BE104302 Rho GTPase activating protein 5 Arhgap5 299012 NM_001047869 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008361 // regulation of cell size // not recorded /// 0030335 // positive regulation of cell migration // not recorded /// 0030879 // mammary gland development // inferred from expression pattern /// 0030879 // mammary gland development // not recorded 0005622 // intracellular // inferred from electronic annotation 0005525 // GTP binding // inferred from electronic annotation /// 0042169 // SH2 domain binding // not recorded 1391582_at AI180053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180053 /DB_XREF=gi:4135213 /DB_XREF=EST223787 /CLONE=RSPCP37 /FEA=EST /CNT=4 /TID=Rn.31458.1 /TIER=ConsEnd /STK=2 /UG=Rn.31458 /UG_TITLE=ESTs AI180053 1391583_at BI280377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280377 /DB_XREF=gi:14929101 /DB_XREF=UI-R-CS0s-cbh-d-05-0-UI.s1 /CLONE=UI-R-CS0s-cbh-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.32513.1 /TIER=ConsEnd /STK=2 /UG=Rn.32513 /UG_TITLE=ESTs BI280377 carbohydrate kinase domain containing Carkd 361185 NM_001108402 0005739 // mitochondrion // not recorded 1391584_at AA850595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850595 /DB_XREF=gi:2938135 /DB_XREF=EST193363 /FEA=EST /CNT=4 /TID=Rn.25189.2 /TIER=ConsEnd /STK=2 /UG=Rn.25189 /UG_TITLE=ESTs AA850595 1391585_at AW253379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253379 /DB_XREF=gi:6596970 /DB_XREF=UI-R-BJ0-aen-c-02-0-UI.s1 /CLONE=UI-R-BJ0-aen-c-02-0-UI /FEA=EST /CNT=4 /TID=Rn.43235.1 /TIER=ConsEnd /STK=2 /UG=Rn.43235 /UG_TITLE=ESTs AW253379 harbinger transposase derived 1 Harbi1 690164 NM_001113793 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004518 // nuclease activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391586_at AI012520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012520 /DB_XREF=gi:3226352 /DB_XREF=EST206971 /CLONE=RPLAY34 /FEA=EST /CNT=4 /TID=Rn.17858.1 /TIER=ConsEnd /STK=2 /UG=Rn.17858 /UG_TITLE=ESTs AI012520 1391587_at AI170450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170450 /DB_XREF=gi:3710490 /DB_XREF=EST216377 /CLONE=RLUCN56 /FEA=EST /CNT=4 /TID=Rn.16809.1 /TIER=ConsEnd /STK=2 /UG=Rn.16809 /UG_TITLE=ESTs AI170450 1391588_at BF394071 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394071 /DB_XREF=gi:11378935 /DB_XREF=UI-R-CA0-bgy-g-02-0-UI.s1 /CLONE=UI-R-CA0-bgy-g-02-0-UI /FEA=EST /CNT=4 /TID=Rn.48890.1 /TIER=ConsEnd /STK=2 /UG=Rn.48890 /UG_TITLE=ESTs BF394071 1391589_at BM385772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385772 /DB_XREF=gi:18185825 /DB_XREF=UI-R-CN1-clx-n-13-0-UI.s1 /CLONE=UI-R-CN1-clx-n-13-0-UI /FEA=EST /CNT=4 /TID=Rn.6442.1 /TIER=ConsEnd /STK=2 /UG=Rn.6442 /UG_TITLE=ESTs BM385772 1391590_at BF282295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282295 /DB_XREF=gi:11213466 /DB_XREF=EST446987 /CLONE=RGIDM91 /FEA=EST /CNT=4 /TID=Rn.19283.1 /TIER=ConsEnd /STK=2 /UG=Rn.19283 /UG_TITLE=ESTs BF282295 RGD1560927 RGD1560927 501507 NM_001109315 1391591_at AW532531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532531 /DB_XREF=gi:7174945 /DB_XREF=UI-R-BS0-ami-g-10-0-UI.s1 /CLONE=UI-R-BS0-ami-g-10-0-UI /FEA=EST /CNT=4 /TID=Rn.44882.1 /TIER=ConsEnd /STK=2 /UG=Rn.44882 /UG_TITLE=ESTs AW532531 zinc finger protein 275 Zfp275 293849 NM_001106343 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391592_at AA944749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944749 /DB_XREF=gi:3104665 /DB_XREF=EST200248 /CLONE=REMAO65 /FEA=EST /CNT=4 /TID=Rn.21442.1 /TIER=ConsEnd /STK=2 /UG=Rn.21442 /UG_TITLE=ESTs AA944749 1391593_at BI286015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286015 /DB_XREF=gi:14940242 /DB_XREF=UI-R-CX0s-ccu-e-03-0-UI.s1 /CLONE=UI-R-CX0s-ccu-e-03-0-UI /FEA=EST /CNT=4 /TID=Rn.40197.1 /TIER=ConsEnd /STK=2 /UG=Rn.40197 /UG_TITLE=ESTs, Weakly similar to Y168_HUMAN HYPOTHETICAL PROTEIN KIAA0168 (H.sapiens) BI286015 Ras association (RalGDS/AF-6) domain family member 4 Rassf4 362423 NM_001024275 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1391594_at BI295733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295733 /DB_XREF=gi:14959476 /DB_XREF=UI-R-DK0-cfa-a-02-0-UI.s1 /CLONE=UI-R-DK0-cfa-a-02-0-UI /FEA=EST /CNT=4 /TID=Rn.55842.1 /TIER=ConsEnd /STK=2 /UG=Rn.55842 /UG_TITLE=ESTs BI295733 1391595_at AI102304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102304 /DB_XREF=gi:3707100 /DB_XREF=EST211593 /CLONE=RBRCB83 /FEA=EST /CNT=4 /TID=Rn.33750.1 /TIER=ConsEnd /STK=2 /UG=Rn.33750 /UG_TITLE=ESTs AI102304 La ribonucleoprotein domain family, member 6 Larp6 315731 NM_001108154 0006396 // RNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1391596_at AI043603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043603 /DB_XREF=gi:3290929 /DB_XREF=UI-R-C1-jv-b-07-0-UI.s1 /CLONE=UI-R-C1-jv-b-07-0-UI /FEA=EST /CNT=4 /TID=Rn.15765.1 /TIER=ConsEnd /STK=2 /UG=Rn.15765 /UG_TITLE=ESTs AI043603 1391597_at AW527416 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527416 /DB_XREF=gi:7169830 /DB_XREF=UI-R-BO1-ajt-b-04-0-UI.s1 /CLONE=UI-R-BO1-ajt-b-04-0-UI /FEA=EST /CNT=4 /TID=Rn.46524.1 /TIER=ConsEnd /STK=2 /UG=Rn.46524 /UG_TITLE=ESTs AW527416 G protein-coupled receptor 75 Gpr75 498434 NM_001109096 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1391598_at AI556642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556642 /DB_XREF=gi:4489005 /DB_XREF=UI-R-C2p-ri-g-03-0-UI.s1 /CLONE=UI-R-C2p-ri-g-03-0-UI /FEA=EST /CNT=4 /TID=Rn.38860.1 /TIER=ConsEnd /STK=2 /UG=Rn.38860 /UG_TITLE=ESTs AI556642 1391599_at AA875010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875010 /DB_XREF=gi:4230892 /DB_XREF=UI-R-E0-cb-c-12-0-UI.s1 /CLONE=UI-R-E0-cb-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.5837.2 /TIER=ConsEnd /STK=2 /UG=Rn.5837 /UG_TITLE=ESTs AA875010 1391600_at BE118049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118049 /DB_XREF=gi:8510154 /DB_XREF=UI-R-BS1-azn-b-02-0-UI.s1 /CLONE=UI-R-BS1-azn-b-02-0-UI /FEA=EST /CNT=4 /TID=Rn.41977.1 /TIER=ConsEnd /STK=2 /UG=Rn.41977 /UG_TITLE=ESTs BE118049 MAX gene associated Mga 499874 XM_002726215 /// XM_575215 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0071339 // MLL1 complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1391601_at AA964579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964579 /DB_XREF=gi:4279453 /DB_XREF=UI-R-E1-go-d-07-0-UI.s1 /CLONE=UI-R-E1-go-d-07-0-UI /FEA=EST /CNT=4 /TID=Rn.11847.1 /TIER=ConsEnd /STK=2 /UG=Rn.11847 /UG_TITLE=ESTs AA964579 leucine rich repeat neuronal 2 Lrrn2 289020 NM_001177368 /// XM_001060363 /// XM_222670 0005515 // protein binding // inferred from electronic annotation 1391602_at AW527113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527113 /DB_XREF=gi:7169527 /DB_XREF=UI-R-BO1-ajh-f-09-0-UI.s1 /CLONE=UI-R-BO1-ajh-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.43426.1 /TIER=ConsEnd /STK=2 /UG=Rn.43426 /UG_TITLE=ESTs, Highly similar to DRG1 MOUSE DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN 1 (M.musculus) AW527113 developmentally regulated GTP binding protein 1 Drg1 305470 NM_001009685 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0045111 // intermediate filament cytoskeleton // inferred from electronic annotation /// 0045111 // intermediate filament cytoskeleton // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1391603_at AW527410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527410 /DB_XREF=gi:7169824 /DB_XREF=UI-R-BO1-ajt-a-10-0-UI.s1 /CLONE=UI-R-BO1-ajt-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.38967.1 /TIER=ConsEnd /STK=2 /UG=Rn.38967 /UG_TITLE=ESTs AW527410 1391604_at BF418841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418841 /DB_XREF=gi:11406830 /DB_XREF=UI-R-BJ2-bqj-e-11-0-UI.s1 /CLONE=UI-R-BJ2-bqj-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.48187.1 /TIER=ConsEnd /STK=2 /UG=Rn.48187 /UG_TITLE=ESTs BF418841 non-SMC condensin II complex, subunit D3 Ncapd3 315508 NM_001034000 0007076 // mitotic chromosome condensation // inferred from electronic annotation /// 0007076 // mitotic chromosome condensation // not recorded 0000799 // nuclear condensin complex // inferred from electronic annotation /// 0000799 // nuclear condensin complex // not recorded 0005488 // binding // inferred from electronic annotation 1391605_at BG666431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666431 /DB_XREF=gi:13888353 /DB_XREF=DRACPF04 /CLONE=DRACPF04 /FEA=EST /CNT=4 /TID=Rn.23653.1 /TIER=ConsEnd /STK=2 /UG=Rn.23653 /UG_TITLE=ESTs BG666431 1391606_at BE116345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116345 /DB_XREF=gi:8508450 /DB_XREF=UI-R-BS1-ayc-b-09-0-UI.s1 /CLONE=UI-R-BS1-ayc-b-09-0-UI /FEA=EST /CNT=4 /TID=Rn.48898.1 /TIER=ConsEnd /STK=2 /UG=Rn.48898 /UG_TITLE=ESTs BE116345 1391607_at BE109653 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109653 /DB_XREF=gi:8501758 /DB_XREF=UI-R-BJ1-avq-f-04-0-UI.s1 /CLONE=UI-R-BJ1-avq-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.23469.1 /TIER=ConsEnd /STK=2 /UG=Rn.23469 /UG_TITLE=ESTs BE109653 similar to Sestrin 2 (Hi95) RGD1566319 502988 NM_001109358 0007050 // cell cycle arrest // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1391608_at AI602260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602260 /DB_XREF=gi:4611421 /DB_XREF=UI-R-AD0-wi-g-10-0-UI.s2 /CLONE=UI-R-AD0-wi-g-10-0-UI /FEA=EST /CNT=4 /TID=Rn.38539.1 /TIER=ConsEnd /STK=2 /UG=Rn.38539 /UG_TITLE=ESTs, Weakly similar to S26689 hypothetical protein hc1 - mouse (M.musculus) AI602260 1391609_at AI412208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412208 /DB_XREF=gi:4255712 /DB_XREF=EST240503 /CLONE=RBRDY76 /FEA=EST /CNT=4 /TID=Rn.43354.1 /TIER=ConsEnd /STK=2 /UG=Rn.43354 /UG_TITLE=ESTs, Weakly similar to T09219 basal transcription factor SNAPc large chain SNAP190 (H.sapiens) AI412208 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1391610_at AI555319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555319 /DB_XREF=gi:4487682 /DB_XREF=UI-R-C2p-qw-a-01-0-UI.s1 /CLONE=UI-R-C2p-qw-a-01-0-UI /FEA=EST /CNT=4 /TID=Rn.39027.1 /TIER=ConsEnd /STK=2 /UG=Rn.39027 /UG_TITLE=ESTs AI555319 1391611_at BI296819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296819 /DB_XREF=gi:14961625 /DB_XREF=UI-R-DK0-cfz-g-06-0-UI.s1 /CLONE=UI-R-DK0-cfz-g-06-0-UI /FEA=EST /CNT=4 /TID=Rn.32294.1 /TIER=ConsEnd /STK=2 /UG=Rn.32294 /UG_TITLE=ESTs BI296819 kinesin family member 12 Kif12 313254 NM_001012102 0007018 // microtubule-based movement // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1391612_at BF282190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282190 /DB_XREF=gi:11213260 /DB_XREF=EST446781 /CLONE=RGIDF43 /FEA=EST /CNT=4 /TID=Rn.13127.1 /TIER=ConsEnd /STK=2 /UG=Rn.13127 /UG_TITLE=ESTs BF282190 interleukin 22 receptor, alpha 2 Il22ra2 444986 NM_001003404 0007596 // blood coagulation // inferred from electronic annotation /// 0042516 // regulation of tyrosine phosphorylation of Stat3 protein // inferred from electronic annotation /// 0042516 // regulation of tyrosine phosphorylation of Stat3 protein // not recorded /// 0050776 // regulation of immune response // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // traceable author statement /// 0005829 // cytosol // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0042017 // interleukin-22 binding // not recorded /// 0042017 // interleukin-22 binding // traceable author statement /// 0042017 // interleukin-22 binding // inferred from electronic annotation /// 0042018 // interleukin-22 receptor activity // inferred from electronic annotation /// 0042018 // interleukin-22 receptor activity // not recorded 1391613_at AW534807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534807 /DB_XREF=gi:7177221 /DB_XREF=UI-R-BS0-anw-e-07-0-UI.s1 /CLONE=UI-R-BS0-anw-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.44924.1 /TIER=ConsEnd /STK=2 /UG=Rn.44924 /UG_TITLE=ESTs AW534807 ELK4, member of ETS oncogene family Elk4 304786 NM_001107173 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1391614_at BI395816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI395816 /DB_XREF=gi:15091411 /DB_XREF=EST531750 /CLONE=RGICN86 /FEA=EST /CNT=4 /TID=Rn.23753.1 /TIER=ConsEnd /STK=2 /UG=Rn.23753 /UG_TITLE=ESTs BI395816 1391615_at BF400897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400897 /DB_XREF=gi:11388872 /DB_XREF=UI-R-CA0-bgg-b-12-0-UI.s1 /CLONE=UI-R-CA0-bgg-b-12-0-UI /FEA=EST /CNT=4 /TID=Rn.58351.1 /TIER=ConsEnd /STK=2 /UG=Rn.58351 /UG_TITLE=ESTs BF400897 1391616_at BF542832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542832 /DB_XREF=gi:11633939 /DB_XREF=UI-R-C3-tl-c-06-0-UI.r1 /CLONE=UI-R-C3-tl-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.42824.1 /TIER=ConsEnd /STK=2 /UG=Rn.42824 /UG_TITLE=ESTs BF542832 1391617_at AI171103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171103 /DB_XREF=gi:3711143 /DB_XREF=EST217051 /CLONE=RMUBG19 /FEA=EST /CNT=4 /TID=Rn.18667.1 /TIER=ConsEnd /STK=2 /UG=Rn.18667 /UG_TITLE=ESTs AI171103 1391618_at AI227800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227800 /DB_XREF=gi:3811687 /DB_XREF=EST224495 /CLONE=RBRCL73 /FEA=EST /CNT=4 /TID=Rn.24266.1 /TIER=ConsEnd /STK=2 /UG=Rn.24266 /UG_TITLE=ESTs, Highly similar to JC6161 kinesin-associated protein KAP3 splice form A - mouse (M.musculus) AI227800 kinesin-associated protein 3 Kifap3 289168 NM_001105964 0008104 // protein localization // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0046587 // positive regulation of calcium-dependent cell-cell adhesion // not recorded 0005871 // kinesin complex // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019894 // kinesin binding // inferred from electronic annotation 1391619_at AI137509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137509 /DB_XREF=gi:3638286 /DB_XREF=UI-R-C2p-oc-c-01-0-UI.s1 /CLONE=UI-R-C2p-oc-c-01-0-UI /FEA=EST /CNT=4 /TID=Rn.23774.1 /TIER=ConsEnd /STK=2 /UG=Rn.23774 /UG_TITLE=ESTs AI137509 basic helix-loop-helix domain containing, class B, 9 Bhlhb9 317407 NM_207611 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1391620_at AI231422 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231422 /DB_XREF=gi:3815302 /DB_XREF=EST228110 /CLONE=REMDJ91 /FEA=EST /CNT=4 /TID=Rn.62790.1 /TIER=ConsEnd /STK=2 /UG=Rn.62790 /UG_TITLE=ESTs AI231422 1391621_at AI179615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179615 /DB_XREF=gi:3730253 /DB_XREF=EST223338 /CLONE=RSPCJ62 /FEA=EST /CNT=4 /TID=Rn.24223.1 /TIER=ConsEnd /STK=2 /UG=Rn.24223 /UG_TITLE=ESTs AI179615 1391622_at AI579391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI579391 /DB_XREF=gi:4563767 /DB_XREF=UI-R-Y0-vo-h-08-0-UI.s2 /CLONE=UI-R-Y0-vo-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.33954.1 /TIER=ConsEnd /STK=2 /UG=Rn.33954 /UG_TITLE=ESTs AI579391 Hypothetical protein LOC681335 LOC681335 681335 XM_001061311 1391623_at AI706933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI706933 /DB_XREF=gi:4994833 /DB_XREF=UI-R-AE1-zk-b-05-0-UI.s1 /CLONE=UI-R-AE1-zk-b-05-0-UI /FEA=EST /CNT=4 /TID=Rn.40602.1 /TIER=ConsEnd /STK=2 /UG=Rn.40602 /UG_TITLE=ESTs AI706933 rCG23949-like LOC100362458 100362458 XR_086345 /// XR_086664 1391624_at BF283572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283572 /DB_XREF=gi:11214642 /DB_XREF=EST448163 /CLONE=RGIEE11 /FEA=EST /CNT=4 /TID=Rn.6394.1 /TIER=ConsEnd /STK=2 /UG=Rn.6394 /UG_TITLE=ESTs BF283572 1391625_at AI706673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI706673 /DB_XREF=gi:4994573 /DB_XREF=UI-R-AD1-zl-d-03-0-UI.s1 /CLONE=UI-R-AD1-zl-d-03-0-UI /FEA=EST /CNT=4 /TID=Rn.40333.1 /TIER=ConsEnd /STK=2 /UG=Rn.40333 /UG_TITLE=ESTs, Weakly similar to WASP MOUSE WISKOTT-ALDRICH SYNDROME PROTEIN HOMOLOG (M.musculus) AI706673 Wiskott-Aldrich syndrome-like Wasl 682507 NM_001110365 0006461 // protein complex assembly // inferred from electronic annotation /// 0008154 // actin polymerization or depolymerization // inferred from electronic annotation /// 0009617 // response to bacterium // inferred from electronic annotation /// 0009617 // response to bacterium // not recorded /// 0030031 // cell projection assembly // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0000139 // Golgi membrane // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391626_at BF288218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288218 /DB_XREF=gi:11219288 /DB_XREF=EST452809 /CLONE=RGIGR10 /FEA=EST /CNT=4 /TID=Rn.42077.1 /TIER=ConsEnd /STK=2 /UG=Rn.42077 /UG_TITLE=ESTs, Weakly similar to YGT3_YEAST HYPOTHETICAL 20.8 KD PROTEIN IN COX4-GTS1 INTERGENIC REGION (S.cerevisiae) BF288218 meiotic nuclear divisions 1 homolog (S. cerevisiae) Mnd1 295160 XM_001072054 /// XM_215595 0005515 // protein binding // not recorded 1391627_at AI237138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237138 /DB_XREF=gi:3830644 /DB_XREF=EST233700 /CLONE=ROVDP11 /FEA=EST /CNT=4 /TID=Rn.39073.1 /TIER=ConsEnd /STK=2 /UG=Rn.39073 /UG_TITLE=ESTs AI237138 1391628_at BF418596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418596 /DB_XREF=gi:11406585 /DB_XREF=UI-R-BJ2-bqh-g-06-0-UI.s1 /CLONE=UI-R-BJ2-bqh-g-06-0-UI /FEA=EST /CNT=4 /TID=Rn.59324.1 /TIER=ConsEnd /STK=2 /UG=Rn.59324 /UG_TITLE=ESTs BF418596 synovial sarcoma translocation, Chromosome 18 Ss18 361295 NM_001100900 0000226 // microtubule cytoskeleton organization // not recorded /// 0000902 // cell morphogenesis // not recorded /// 0007010 // cytoskeleton organization // not recorded /// 0007243 // intracellular protein kinase cascade // not recorded /// 0042493 // response to drug // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048013 // ephrin receptor signaling pathway // not recorded 0005881 // cytoplasmic microtubule // not recorded 0005515 // protein binding // not recorded /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded 1391629_at BI290794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290794 /DB_XREF=gi:14949706 /DB_XREF=UI-R-DK0-cga-d-12-0-UI.s1 /CLONE=UI-R-DK0-cga-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.40729.1 /TIER=ConsEnd /STK=2 /UG=Rn.40729 /UG_TITLE=ESTs BI290794 1391630_at BF420033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420033 /DB_XREF=gi:11408022 /DB_XREF=UI-R-BJ2-bpm-b-11-0-UI.s1 /CLONE=UI-R-BJ2-bpm-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.40520.1 /TIER=ConsEnd /STK=2 /UG=Rn.40520 /UG_TITLE=ESTs BF420033 T-box18 Tbx18 315870 NM_001108173 0001756 // somitogenesis // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0009948 // anterior/posterior axis specification // not recorded /// 0016331 // morphogenesis of embryonic epithelium // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0051145 // smooth muscle cell differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1391631_at AA924498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924498 /DB_XREF=gi:4235689 /DB_XREF=UI-R-A1-ed-a-08-0-UI.s1 /CLONE=UI-R-A1-ed-a-08-0-UI /FEA=EST /CNT=4 /TID=Rn.23065.1 /TIER=ConsEnd /STK=2 /UG=Rn.23065 /UG_TITLE=ESTs AA924498 1391632_at AA964568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964568 /DB_XREF=gi:4279442 /DB_XREF=UI-R-E1-go-c-08-0-UI.s1 /CLONE=UI-R-E1-go-c-08-0-UI /FEA=EST /CNT=4 /TID=Rn.23229.1 /TIER=ConsEnd /STK=2 /UG=Rn.23229 /UG_TITLE=ESTs, Weakly similar to Y310_HUMAN Hypothetical protein KIAA0310 (H.sapiens) AA964568 SEC16 homolog A-like LOC100360302 100360302 XM_002729146 1391633_at BF390387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390387 /DB_XREF=gi:11375233 /DB_XREF=UI-R-CA1-bcg-d-07-0-UI.s1 /CLONE=UI-R-CA1-bcg-d-07-0-UI /FEA=EST /CNT=4 /TID=Rn.55527.1 /TIER=ConsEnd /STK=2 /UG=Rn.55527 /UG_TITLE=ESTs, Weakly similar to S25111 alpha-2-macroglobulin receptor precursor - mouse (M.musculus) BF390387 1391634_at BF552826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552826 /DB_XREF=gi:11662556 /DB_XREF=UI-R-C2-nm-d-09-0-UI.r1 /CLONE=UI-R-C2-nm-d-09-0-UI /FEA=EST /CNT=4 /TID=Rn.26535.1 /TIER=ConsEnd /STK=2 /UG=Rn.26535 /UG_TITLE=ESTs BF552826 1391635_at AI044500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044500 /DB_XREF=gi:3291361 /DB_XREF=UI-R-C1-jw-g-11-0-UI.s1 /CLONE=UI-R-C1-jw-g-11-0-UI /FEA=EST /CNT=4 /TID=Rn.20761.1 /TIER=ConsEnd /STK=2 /UG=Rn.20761 /UG_TITLE=ESTs AI044500 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like Ctdspl 301056 NM_001106865 0016791 // phosphatase activity // inferred from electronic annotation 1391636_at BI296260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296260 /DB_XREF=gi:14960523 /DB_XREF=UI-R-DK0-cey-c-01-0-UI.s1 /CLONE=UI-R-DK0-cey-c-01-0-UI /FEA=EST /CNT=4 /TID=Rn.46939.1 /TIER=ConsEnd /STK=2 /UG=Rn.46939 /UG_TITLE=ESTs BI296260 1391637_at AI178168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178168 /DB_XREF=gi:3728806 /DB_XREF=EST221833 /CLONE=RPLCN11 /FEA=EST /CNT=4 /TID=Rn.15607.1 /TIER=ConsEnd /STK=2 /UG=Rn.15607 /UG_TITLE=ESTs, Weakly similar to chimerin (chimaerin) 1 (Rattus norvegicus) (R.norvegicus) AI178168 Rho GTPase activating protein 15 /// rho GTPase-activating protein 15-like Arhgap15 /// LOC100360213 100360213 /// 295635 NM_001013917 /// XM_002729163 0007165 // signal transduction // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030675 // Rac GTPase activator activity // inferred from electronic annotation /// 0030675 // Rac GTPase activator activity // not recorded 1391638_at AA997700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997700 /DB_XREF=gi:4280982 /DB_XREF=UI-R-C0-hp-f-06-0-UI.s1 /CLONE=UI-R-C0-hp-f-06-0-UI /FEA=EST /CNT=4 /TID=Rn.22973.1 /TIER=ConsEnd /STK=2 /UG=Rn.22973 /UG_TITLE=ESTs AA997700 TM2 domain containing 1 Tm2d1 362545 NM_001108670 0007165 // signal transduction // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded 0005887 // integral to plasma membrane // not recorded 0001540 // beta-amyloid binding // not recorded /// 0004930 // G-protein coupled receptor activity // not recorded 1391639_at AI170084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170084 /DB_XREF=gi:3710124 /DB_XREF=EST216001 /CLONE=RLUBY79 /FEA=EST /CNT=4 /TID=Rn.22818.1 /TIER=ConsEnd /STK=2 /UG=Rn.22818 /UG_TITLE=ESTs AI170084 1391640_at BF290284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290284 /DB_XREF=gi:11221354 /DB_XREF=EST454875 /CLONE=RGIHU61 /FEA=EST /CNT=4 /TID=Rn.24243.1 /TIER=ConsEnd /STK=2 /UG=Rn.24243 /UG_TITLE=ESTs BF290284 1391641_at AI598332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598332 /DB_XREF=gi:4607380 /DB_XREF=EST250035 /CLONE=REMDO84 /FEA=EST /CNT=4 /TID=Rn.40482.1 /TIER=ConsEnd /STK=2 /UG=Rn.40482 /UG_TITLE=ESTs AI598332 1391642_at AA819563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819563 /DB_XREF=gi:4228699 /DB_XREF=UI-R-A0-bh-e-04-0-UI.s1 /CLONE=UI-R-A0-bh-e-04-0-UI /FEA=EST /CNT=4 /TID=Rn.62592.1 /TIER=ConsEnd /STK=2 /UG=Rn.62592 /UG_TITLE=ESTs AA819563 zinc finger and BTB domain containing 39 Zbtb39 299510 NM_001130537 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391643_at BI290758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290758 /DB_XREF=gi:14949632 /DB_XREF=UI-R-DK0-cga-a-10-0-UI.s1 /CLONE=UI-R-DK0-cga-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.79389.1 /TIER=ConsEnd /STK=2 /UG=Rn.79389 /UG_TITLE=ESTs BI290758 1391644_at AW920336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920336 /DB_XREF=gi:8086145 /DB_XREF=EST351640 /CLONE=RGIGU23 /FEA=EST /CNT=4 /TID=Rn.49281.1 /TIER=ConsEnd /STK=2 /UG=Rn.49281 /UG_TITLE=ESTs AW920336 similar to density-regulated protein LOC687565 687565 NM_001115046 0006413 // translational initiation // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred from electronic annotation 1391645_at BF393822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393822 /DB_XREF=gi:11378685 /DB_XREF=UI-R-CA0-bgv-d-03-0-UI.s1 /CLONE=UI-R-CA0-bgv-d-03-0-UI /FEA=EST /CNT=4 /TID=Rn.58162.1 /TIER=ConsEnd /STK=2 /UG=Rn.58162 /UG_TITLE=ESTs BF393822 1391646_at AI502092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502092 /DB_XREF=gi:4399943 /DB_XREF=UI-R-C2p-rx-a-09-0-UI.s2 /CLONE=UI-R-C2p-rx-a-09-0-UI /FEA=EST /CNT=4 /TID=Rn.35758.1 /TIER=ConsEnd /STK=2 /UG=Rn.35758 /UG_TITLE=ESTs AI502092 1391647_at AI232625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232625 /DB_XREF=gi:3816505 /DB_XREF=EST229313 /CLONE=RKICE41 /FEA=EST /CNT=4 /TID=Rn.24665.1 /TIER=ConsEnd /STK=2 /UG=Rn.24665 /UG_TITLE=ESTs AI232625 1391648_at BF545697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545697 /DB_XREF=gi:11636804 /DB_XREF=UI-R-C2p-qq-a-03-0-UI.r1 /CLONE=UI-R-C2p-qq-a-03-0-UI /FEA=EST /CNT=4 /TID=Rn.38785.1 /TIER=ConsEnd /STK=2 /UG=Rn.38785 /UG_TITLE=ESTs BF545697 Down syndrome critical region homolog 6 (human) Dscr6 288239 NM_001105892 1391649_a_at AW915522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915522 /DB_XREF=gi:8081220 /DB_XREF=EST346826 /CLONE=RGICW33 /FEA=EST /CNT=4 /TID=Rn.15436.1 /TIER=ConsEnd /STK=2 /UG=Rn.15436 /UG_TITLE=ESTs AW915522 1391650_at AA998669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998669 /DB_XREF=gi:4291454 /DB_XREF=UI-R-C0-ig-f-04-0-UI.s1 /CLONE=UI-R-C0-ig-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.40259.1 /TIER=ConsEnd /STK=2 /UG=Rn.40259 /UG_TITLE=ESTs AA998669 0006350 // transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391651_at BF408842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408842 /DB_XREF=gi:11396817 /DB_XREF=UI-R-BS2-bet-a-10-0-UI.s1 /CLONE=UI-R-BS2-bet-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.55825.1 /TIER=ConsEnd /STK=2 /UG=Rn.55825 /UG_TITLE=ESTs BF408842 ATPase family, AAA domain containing 2 Atad2 314993 NM_001134879 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1391652_at AI411140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411140 /DB_XREF=gi:4254644 /DB_XREF=EST239434 /CLONE=RKIER85 /FEA=EST /CNT=6 /TID=Rn.21872.1 /TIER=ConsEnd /STK=2 /UG=Rn.21872 /UG_TITLE=ESTs AI411140 glycine-N-acyltransferase Glyat 293779 NM_001009648 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0047961 // glycine N-acyltransferase activity // inferred from electronic annotation 1391653_at BE120391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120391 /DB_XREF=gi:8512496 /DB_XREF=UI-R-CA0-baq-h-03-0-UI.s1 /CLONE=UI-R-CA0-baq-h-03-0-UI /FEA=EST /CNT=5 /TID=Rn.45653.1 /TIER=ConsEnd /STK=2 /UG=Rn.45653 /UG_TITLE=ESTs BE120391 gamma-aminobutyric acid (GABA) A receptor, gamma 2 Gabrg2 29709 NM_183327 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from electronic annotation /// 0006821 // chloride transport // traceable author statement /// 0007165 // signal transduction // not recorded /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // not recorded /// 0007214 // gamma-aminobutyric acid signaling pathway // traceable author statement /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0030534 // adult behavior // inferred from electronic annotation /// 0030534 // adult behavior // not recorded 0005737 // cytoplasm // inferred from expression pattern /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004890 // GABA-A receptor activity // inferred from direct assay /// 0004890 // GABA-A receptor activity // inferred from electronic annotation /// 0004890 // GABA-A receptor activity // not recorded /// 0004890 // GABA-A receptor activity // traceable author statement /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005237 // inhibitory extracellular ligand-gated ion channel activity // traceable author statement /// 0005254 // chloride channel activity // inferred from direct assay /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391654_at BF399329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399329 /DB_XREF=gi:11384333 /DB_XREF=UI-R-CA1-bjb-c-24-0-UI.s1 /CLONE=UI-R-CA1-bjb-c-24-0-UI /FEA=EST /CNT=5 /TID=Rn.43880.1 /TIER=ConsEnd /STK=2 /UG=Rn.43880 /UG_TITLE=ESTs BF399329 1391655_a_at AI112996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112996 /DB_XREF=gi:3512945 /DB_XREF=UI-R-E1-gp-f-09-0-UI.s1 /CLONE=UI-R-E1-gp-f-09-0-UI /FEA=EST /CNT=1 /TID=Rn.32325.3 /TIER=ConsEnd /STK=1 /UG=Rn.32325 /UG_TITLE=ESTs AI112996 Ubiquitin domain containing 2 Ubtd2 287178 XM_001063674 /// XM_213249 1391656_at AI101416 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101416 /DB_XREF=gi:3706321 /DB_XREF=EST210705 /CLONE=RBRBO25 /FEA=EST /CNT=5 /TID=Rn.23887.1 /TIER=ConsEnd /STK=2 /UG=Rn.23887 /UG_TITLE=ESTs AI101416 carboxypeptidase M Cpm 314855 NM_001108098 0006508 // proteolysis // inferred from electronic annotation 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1391657_at AW525993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525993 /DB_XREF=gi:7168378 /DB_XREF=UI-R-BO1-aiy-a-10-0-UI.s1 /CLONE=UI-R-BO1-aiy-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.46056.1 /TIER=ConsEnd /STK=2 /UG=Rn.46056 /UG_TITLE=ESTs AW525993 aldehyde dehydrogenase 5 family, member A1 Aldh5a1 291133 XM_001062926 /// XM_214478 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006083 // acetate metabolic process // inferred from electronic annotation /// 0006083 // acetate metabolic process // not recorded /// 0006105 // succinate metabolic process // inferred from direct assay /// 0006105 // succinate metabolic process // not recorded /// 0006105 // succinate metabolic process // inferred from electronic annotation /// 0006536 // glutamate metabolic process // inferred from electronic annotation /// 0006536 // glutamate metabolic process // not recorded /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0006541 // glutamine metabolic process // not recorded /// 0006650 // glycerophospholipid metabolic process // inferred from electronic annotation /// 0006650 // glycerophospholipid metabolic process // not recorded /// 0006678 // glucosylceramide metabolic process // inferred from electronic annotation /// 0006678 // glucosylceramide metabolic process // not recorded /// 0006681 // galactosylceramide metabolic process // inferred from electronic annotation /// 0006681 // galactosylceramide metabolic process // not recorded /// 0006749 // glutathione metabolic process // inferred from electronic annotation /// 0006749 // glutathione metabolic process // not recorded /// 0007417 // central nervous system development // not recorded /// 0007417 // central nervous system development // inferred from sequence or structural similarity /// 0007417 // central nervous system development // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0009448 // gamma-aminobutyric acid metabolic process // not recorded /// 0009448 // gamma-aminobutyric acid metabolic process // inferred from electronic annotation /// 0009450 // gamma-aminobutyric acid catabolic process // not recorded /// 0009450 // gamma-aminobutyric acid catabolic process // inferred from sequence or structural similarity /// 0009450 // gamma-aminobutyric acid catabolic process // traceable author statement /// 0009450 // gamma-aminobutyric acid catabolic process // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0022904 // respiratory electron transport chain // inferred from electronic annotation /// 0022904 // respiratory electron transport chain // not recorded /// 0042135 // neurotransmitter catabolic process // inferred from electronic annotation /// 0042135 // neurotransmitter catabolic process // not recorded /// 0046459 // short-chain fatty acid metabolic process // inferred from electronic annotation /// 0046459 // short-chain fatty acid metabolic process // not recorded /// 0051289 // protein homotetramerization // not recorded /// 0055114 // oxidation reduction // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005625 // soluble fraction // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation 0004777 // succinate-semialdehyde dehydrogenase activity // inferred from direct assay /// 0004777 // succinate-semialdehyde dehydrogenase activity // not recorded /// 0004777 // succinate-semialdehyde dehydrogenase activity // inferred from sequence or structural similarity /// 0004777 // succinate-semialdehyde dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016620 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0031406 // carboxylic acid binding // inferred from physical interaction /// 0051287 // NAD or NADH binding // inferred from direct assay 1391658_at BF414061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414061 /DB_XREF=gi:11402050 /DB_XREF=UI-R-BJ2-bol-h-10-0-UI.s1 /CLONE=UI-R-BJ2-bol-h-10-0-UI /FEA=EST /CNT=4 /TID=Rn.64466.1 /TIER=ConsEnd /STK=2 /UG=Rn.64466 /UG_TITLE=ESTs, Highly similar to COPD_HUMAN COATOMER DELTA SUBUNIT (H.sapiens) BF414061 archain 1 Arcn1 300674 NM_001007662 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0048205 // COPI coating of Golgi vesicle // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0030663 // COPI coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1391659_at BF283697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283697 /DB_XREF=gi:11214767 /DB_XREF=EST448288 /CLONE=RGIEF59 /FEA=EST /CNT=4 /TID=Rn.7883.1 /TIER=ConsEnd /STK=2 /UG=Rn.7883 /UG_TITLE=ESTs BF283697 1391660_at AI412900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412900 /DB_XREF=gi:4256404 /DB_XREF=EST241200 /CLONE=RKIEJ87 /FEA=EST /CNT=4 /TID=Rn.44098.1 /TIER=ConsEnd /STK=2 /UG=Rn.44098 /UG_TITLE=ESTs AI412900 1391661_at AA945076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945076 /DB_XREF=gi:3104992 /DB_XREF=EST200575 /CLONE=RLIAG19 /FEA=EST /CNT=4 /TID=Rn.7832.1 /TIER=ConsEnd /STK=2 /UG=Rn.7832 /UG_TITLE=ESTs AA945076 glycerol kinase Gk 79223 NM_024381 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006071 // glycerol metabolic process // not recorded /// 0006071 // glycerol metabolic process // inferred from electronic annotation /// 0006072 // glycerol-3-phosphate metabolic process // inferred from electronic annotation /// 0009409 // response to cold // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0016310 // phosphorylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045471 // response to ethanol // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004370 // glycerol kinase activity // inferred from electronic annotation /// 0004370 // glycerol kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0042393 // histone binding // inferred from direct assay 1391662_at AI104367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104367 /DB_XREF=gi:3708738 /DB_XREF=EST213656 /CLONE=RHECC37 /FEA=EST /CNT=4 /TID=Rn.40257.1 /TIER=ConsEnd /STK=2 /UG=Rn.40257 /UG_TITLE=ESTs AI104367 similar to RIKEN cDNA 9430015G10 RGD1311517 313775 NM_001014072 1391663_at AI511259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511259 /DB_XREF=gi:4416958 /DB_XREF=UI-R-C3-sv-a-09-0-UI.s1 /CLONE=UI-R-C3-sv-a-09-0-UI /FEA=EST /CNT=4 /TID=Rn.34664.1 /TIER=ConsEnd /STK=2 /UG=Rn.34664 /UG_TITLE=ESTs AI511259 1391664_at BF414659 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414659 /DB_XREF=gi:11402648 /DB_XREF=UI-R-BJ2-bor-d-09-0-UI.s1 /CLONE=UI-R-BJ2-bor-d-09-0-UI /FEA=EST /CNT=4 /TID=Rn.62590.1 /TIER=ConsEnd /STK=2 /UG=Rn.62590 /UG_TITLE=ESTs BF414659 phosphatidylinositol glycan anchor biosynthesis, class V Pigv 366478 NM_001010966 0006506 // GPI anchor biosynthetic process // inferred from electronic annotation /// 0006506 // GPI anchor biosynthetic process // not recorded /// 0016254 // preassembly of GPI anchor in ER membrane // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000030 // mannosyltransferase activity // inferred from electronic annotation /// 0000030 // mannosyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1391665_at AI177304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177304 /DB_XREF=gi:3727942 /DB_XREF=EST220921 /CLONE=RPLBX24 /FEA=EST /CNT=4 /TID=Rn.6751.1 /TIER=ConsEnd /STK=2 /UG=Rn.6751 /UG_TITLE=ESTs AI177304 1391666_at AI228398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228398 /DB_XREF=gi:3812285 /DB_XREF=EST225093 /CLONE=RBRCU21 /FEA=EST /CNT=4 /TID=Rn.23650.1 /TIER=ConsEnd /STK=2 /UG=Rn.23650 /UG_TITLE=ESTs AI228398 AP2 associated kinase 1 Aak1 500244 NM_001173450 /// XM_001070331 /// XM_575594 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005905 // coated pit // inferred from electronic annotation /// 0071439 // clathrin complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1391667_at AI227818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227818 /DB_XREF=gi:3811705 /DB_XREF=EST224513 /CLONE=RBRCM07 /FEA=EST /CNT=4 /TID=Rn.19023.1 /TIER=ConsEnd /STK=2 /UG=Rn.19023 /UG_TITLE=ESTs AI227818 1391668_at AA964735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964735 /DB_XREF=gi:4279609 /DB_XREF=UI-R-C0-gx-f-09-0-UI.s1 /CLONE=UI-R-C0-gx-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.52032.1 /TIER=ConsEnd /STK=2 /UG=Rn.52032 /UG_TITLE=ESTs AA964735 1391669_at BM391921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391921 /DB_XREF=gi:18191974 /DB_XREF=UI-R-DM1-ckc-f-21-0-UI.s2 /CLONE=UI-R-DM1-ckc-f-21-0-UI /FEA=EST /CNT=4 /TID=Rn.27540.1 /TIER=ConsEnd /STK=2 /UG=Rn.27540 /UG_TITLE=ESTs, Weakly similar to A55148 protein-tyrosine-phosphatase (R.norvegicus) BM391921 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1391670_at BI295819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295819 /DB_XREF=gi:14959648 /DB_XREF=UI-R-DK0-cfb-a-07-0-UI.s1 /CLONE=UI-R-DK0-cfb-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.38378.1 /TIER=ConsEnd /STK=2 /UG=Rn.38378 /UG_TITLE=ESTs BI295819 1391671_at AA997871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997871 /DB_XREF=gi:4285912 /DB_XREF=UI-R-C0-hu-e-11-0-UI.s1 /CLONE=UI-R-C0-hu-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.33113.1 /TIER=ConsEnd /STK=2 /UG=Rn.33113 /UG_TITLE=ESTs AA997871 Sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D Sema4d 306790 NM_001170563 /// XM_001053912 /// XM_225215 0007275 // multicellular organismal development // inferred from electronic annotation /// 0050772 // positive regulation of axonogenesis // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // not recorded /// 0005102 // receptor binding // not recorded 1391672_at BF399539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399539 /DB_XREF=gi:11384547 /DB_XREF=UI-R-CA1-bjb-l-16-0-UI.s1 /CLONE=UI-R-CA1-bjb-l-16-0-UI /FEA=EST /CNT=4 /TID=Rn.29773.1 /TIER=ConsEnd /STK=2 /UG=Rn.29773 /UG_TITLE=ESTs BF399539 1391673_at AI179083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179083 /DB_XREF=gi:3729721 /DB_XREF=EST222766 /CLONE=RSPCB50 /FEA=EST /CNT=4 /TID=Rn.20805.1 /TIER=ConsEnd /STK=2 /UG=Rn.20805 /UG_TITLE=ESTs AI179083 Rho GTPase activating protein 20 Arhgap20 367085 NM_213629 0007165 // signal transduction // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // traceable author statement 0005622 // intracellular // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0017048 // Rho GTPase binding // traceable author statement 1391674_at AA925120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925120 /DB_XREF=gi:4236311 /DB_XREF=UI-R-A1-ei-d-05-0-UI.s1 /CLONE=UI-R-A1-ei-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.15458.1 /TIER=ConsEnd /STK=2 /UG=Rn.15458 /UG_TITLE=ESTs AA925120 1391675_at BI281653 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281653 /DB_XREF=gi:14931601 /DB_XREF=UI-R-CT0s-cau-h-08-0-UI.s1 /CLONE=UI-R-CT0s-cau-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.40586.1 /TIER=ConsEnd /STK=2 /UG=Rn.40586 /UG_TITLE=ESTs, Weakly similar to A45973 trichohyalin (H.sapiens) BI281653 similar to RIKEN cDNA 4930455F23 RGD1309708 360867 NM_001014131 1391676_at AI511097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511097 /DB_XREF=gi:4416796 /DB_XREF=UI-R-C2p-oi-d-02-0-UI.s1 /CLONE=UI-R-C2p-oi-d-02-0-UI /FEA=EST /CNT=4 /TID=Rn.37151.2 /TIER=ConsEnd /STK=2 /UG=Rn.37151 /UG_TITLE=ESTs AI511097 1391677_at AA900618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900618 /DB_XREF=gi:4233111 /DB_XREF=UI-R-E0-by-b-12-0-UI.s4 /CLONE=UI-R-E0-by-b-12-0-UI /FEA=EST /CNT=4 /TID=Rn.8232.2 /TIER=ConsEnd /STK=2 /UG=Rn.8232 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) AA900618 Interferon (alpha, beta and omega) receptor 1 Ifnar1 288264 NM_001105893 0007596 // blood coagulation // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0042110 // T cell activation // not recorded /// 0045351 // type I interferon biosynthetic process // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004904 // interferon receptor activity // not recorded /// 0005515 // protein binding // not recorded 1391678_at BI294574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294574 /DB_XREF=gi:14957158 /DB_XREF=UI-R-DK0-cel-h-01-0-UI.s1 /CLONE=UI-R-DK0-cel-h-01-0-UI /FEA=EST /CNT=4 /TID=Rn.40296.1 /TIER=ConsEnd /STK=2 /UG=Rn.40296 /UG_TITLE=ESTs BI294574 paired box 1 Pax1 311505 NM_001107787 0001501 // skeletal system development // not recorded /// 0001756 // somitogenesis // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0043367 // CD4-positive, alpha beta T cell differentiation // not recorded /// 0043374 // CD8-positive, alpha-beta T cell differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048538 // thymus development // not recorded /// 0060017 // parathyroid gland development // not recorded /// 0060349 // bone morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1391679_at AA944639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944639 /DB_XREF=gi:3104555 /DB_XREF=EST200138 /CLONE=REMAM20 /FEA=EST /CNT=4 /TID=Rn.62561.1 /TIER=ConsEnd /STK=2 /UG=Rn.62561 /UG_TITLE=ESTs AA944639 hypothetical protein LOC691083 LOC691083 691083 NM_001144862 1391680_at BF410646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410646 /DB_XREF=gi:11398579 /DB_XREF=UI-R-CA0-bma-f-12-0-UI.s1 /CLONE=UI-R-CA0-bma-f-12-0-UI /FEA=EST /CNT=4 /TID=Rn.28041.1 /TIER=ConsEnd /STK=2 /UG=Rn.28041 /UG_TITLE=ESTs BF410646 1391681_at AI409729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409729 /DB_XREF=gi:4253233 /DB_XREF=EST238021 /CLONE=RPLDJ01 /FEA=EST /CNT=3 /TID=Rn.43265.1 /TIER=ConsEnd /STK=2 /UG=Rn.43265 /UG_TITLE=ESTs, Weakly similar to CGE1 RAT G1S-SPECIFIC CYCLIN E1 (R.norvegicus) AI409729 Cyclin E2 Ccne2 362485 NM_001108656 0006270 // DNA-dependent DNA replication initiation // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0042325 // regulation of phosphorylation // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0051301 // cell division // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded /// 0016538 // cyclin-dependent protein kinase regulator activity // not recorded 1391682_at AI169812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169812 /DB_XREF=gi:3709852 /DB_XREF=EST215714 /CLONE=RLIAT55 /FEA=EST /CNT=3 /TID=Rn.25520.1 /TIER=ConsEnd /STK=2 /UG=Rn.25520 /UG_TITLE=ESTs AI169812 1391683_at BF563946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563946 /DB_XREF=gi:11673676 /DB_XREF=UI-R-C4-akw-c-06-0-UI.r1 /CLONE=UI-R-C4-akw-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.7783.1 /TIER=ConsEnd /STK=2 /UG=Rn.7783 /UG_TITLE=ESTs BF563946 1391684_at AW521094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521094 /DB_XREF=gi:7163472 /DB_XREF=UI-R-BO0-agp-b-06-0-UI.s1 /CLONE=UI-R-BO0-agp-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.45035.1 /TIER=ConsEnd /STK=2 /UG=Rn.45035 /UG_TITLE=ESTs, Highly similar to PD11_MOUSE PROTEIN PTD011 HOMOLOG (M.musculus) AW521094 transmembrane protein 14A Tmem14a 363206 NM_001108790 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1391685_at AW521201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521201 /DB_XREF=gi:7163579 /DB_XREF=UI-R-BO0-agk-d-11-0-UI.s1 /CLONE=UI-R-BO0-agk-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.45131.1 /TIER=ConsEnd /STK=2 /UG=Rn.45131 /UG_TITLE=ESTs AW521201 poly(A)-specific ribonuclease (PARN)-like domain containing 1 Pnldc1 361478 NM_001025724 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation 1391686_at BF397224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397224 /DB_XREF=gi:11382207 /DB_XREF=UI-R-BS2-bej-h-01-0-UI.s1 /CLONE=UI-R-BS2-bej-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.11666.1 /TIER=ConsEnd /STK=2 /UG=Rn.11666 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BF397224 1391687_at AI228002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228002 /DB_XREF=gi:3811889 /DB_XREF=EST224697 /CLONE=RBRCO65 /FEA=EST /CNT=3 /TID=Rn.43098.1 /TIER=ConsEnd /STK=2 /UG=Rn.43098 /UG_TITLE=ESTs AI228002 1391688_at BM385156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385156 /DB_XREF=gi:18185209 /DB_XREF=UI-R-CN1-cjm-j-24-0-UI.s2 /CLONE=UI-R-CN1-cjm-j-24-0-UI /FEA=EST /CNT=3 /TID=Rn.47167.1 /TIER=ConsEnd /STK=2 /UG=Rn.47167 /UG_TITLE=ESTs BM385156 mitogen-activated protein kinase kinase kinase 14 Map3k14 360640 NM_001108301 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from mutant phenotype /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1391689_at BI282883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282883 /DB_XREF=gi:14934090 /DB_XREF=UI-R-CW0s-ccc-e-05-0-UI.s1 /CLONE=UI-R-CW0s-ccc-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.20786.1 /TIER=ConsEnd /STK=2 /UG=Rn.20786 /UG_TITLE=ESTs, Highly similar to RBB2_HUMAN RETINOBLASTOMA BINDING PROTEIN 2 (H.sapiens) BI282883 jumonji, AT rich interactive domain 1A (Rbp2 like) Jarid1a 312678 XM_002726483 /// XM_002729425 0045941 // positive regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0019907 // cyclin-dependent protein kinase activating kinase holoenzyme complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391690_at AI171008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171008 /DB_XREF=gi:3711048 /DB_XREF=EST216953 /CLONE=RMUBE81 /FEA=EST /CNT=3 /TID=Rn.23563.1 /TIER=ConsEnd /STK=2 /UG=Rn.23563 /UG_TITLE=ESTs AI171008 G protein-coupled receptor 114 Gpr114 307645 NM_001107410 0007218 // neuropeptide signaling pathway // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1391691_at AA925241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925241 /DB_XREF=gi:4236432 /DB_XREF=UI-R-A1-eh-h-01-0-UI.s1 /CLONE=UI-R-A1-eh-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.8140.1 /TIER=ConsEnd /STK=2 /UG=Rn.8140 /UG_TITLE=ESTs AA925241 1391692_at AI229519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229519 /DB_XREF=gi:3813406 /DB_XREF=EST226214 /CLONE=REMCH65 /FEA=EST /CNT=3 /TID=Rn.35503.1 /TIER=ConsEnd /STK=2 /UG=Rn.35503 /UG_TITLE=ESTs AI229519 1391693_at BM384161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384161 /DB_XREF=gi:18184214 /DB_XREF=UI-R-DZ0-cks-d-06-0-UI.s1 /CLONE=UI-R-DZ0-cks-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.81396.1 /TIER=ConsEnd /STK=2 /UG=Rn.81396 /UG_TITLE=ESTs, Weakly similar to AT1D MOUSE POTENTIAL PHOSPHOLIPID-TRANSPORTING ATPASE ID (M.musculus) BM384161 ATPase, Class I, type 8B, member 1 Atp8b1 291555 NM_001106140 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008206 // bile acid metabolic process // not recorded /// 0015914 // phospholipid transport // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0031526 // brush border membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004012 // phospholipid-translocating ATPase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation 1391694_at AW521119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521119 /DB_XREF=gi:7163497 /DB_XREF=UI-R-BO0-agp-d-10-0-UI.s1 /CLONE=UI-R-BO0-agp-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.50516.1 /TIER=ConsEnd /STK=2 /UG=Rn.50516 /UG_TITLE=ESTs AW521119 1391695_at BE118403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118403 /DB_XREF=gi:8510508 /DB_XREF=UI-R-BJ1-azp-c-02-0-UI.s1 /CLONE=UI-R-BJ1-azp-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.26984.1 /TIER=ConsEnd /STK=2 /UG=Rn.26984 /UG_TITLE=ESTs BE118403 1391696_at AI599889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599889 /DB_XREF=gi:4608937 /DB_XREF=EST251592 /CLONE=REMEL58 /FEA=EST /CNT=3 /TID=Rn.44929.1 /TIER=ConsEnd /STK=2 /UG=Rn.44929 /UG_TITLE=ESTs AI599889 1391697_at BM392082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392082 /DB_XREF=gi:18192135 /DB_XREF=UI-R-DO1-ckp-i-03-0-UI.s1 /CLONE=UI-R-DO1-ckp-i-03-0-UI /FEA=EST /CNT=3 /TID=Rn.81244.1 /TIER=ConsEnd /STK=2 /UG=Rn.81244 /UG_TITLE=ESTs BM392082 1391698_at AI072348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072348 /DB_XREF=gi:3398542 /DB_XREF=UI-R-C2-ng-f-01-0-UI.s1 /CLONE=UI-R-C2-ng-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.20131.1 /TIER=ConsEnd /STK=2 /UG=Rn.20131 /UG_TITLE=ESTs, Moderately similar to A54602 microtubule-associated serinethreonine protein kinase MAST205 - mouse (M.musculus) AI072348 microtubule associated serine/threonine kinase 1 MAST1 353118 NM_181089 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007010 // cytoskeleton organization // not recorded /// 0007010 // cytoskeleton organization // inferred from sequence or structural similarity /// 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391699_at AI556892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556892 /DB_XREF=gi:4489255 /DB_XREF=UI-R-C2p-rp-b-11-0-UI.s1 /CLONE=UI-R-C2p-rp-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.39316.1 /TIER=ConsEnd /STK=2 /UG=Rn.39316 /UG_TITLE=ESTs AI556892 polymerase (RNA) II (DNA directed) polypeptide F Polr2f 83503 NM_031335 0006350 // transcription // inferred from electronic annotation /// 0006351 // transcription, DNA-dependent // inferred from electronic annotation /// 0006360 // transcription from RNA polymerase I promoter // traceable author statement /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006366 // transcription from RNA polymerase II promoter // traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0006383 // transcription from RNA polymerase III promoter // traceable author statement /// 0008152 // metabolic process // not recorded /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005665 // DNA-directed RNA polymerase II, core complex // not recorded /// 0005665 // DNA-directed RNA polymerase II, core complex // inferred from sequence or structural similarity /// 0005665 // DNA-directed RNA polymerase II, core complex // traceable author statement /// 0005666 // DNA-directed RNA polymerase III complex // traceable author statement /// 0005730 // nucleolus // not recorded /// 0005736 // DNA-directed RNA polymerase I complex // traceable author statement /// 0030880 // RNA polymerase complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // not recorded /// 0003899 // DNA-directed RNA polymerase activity // traceable author statement /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from sequence or structural similarity 1391700_at BI294908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294908 /DB_XREF=gi:14957822 /DB_XREF=UI-R-DK0-ced-e-08-0-UI.s1 /CLONE=UI-R-DK0-ced-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.21199.1 /TIER=ConsEnd /STK=2 /UG=Rn.21199 /UG_TITLE=ESTs BI294908 1391701_at BE111692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111692 /DB_XREF=gi:8503797 /DB_XREF=UI-R-BJ1-avv-f-11-0-UI.s1 /CLONE=UI-R-BJ1-avv-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.33802.1 /TIER=ConsEnd /STK=2 /UG=Rn.33802 /UG_TITLE=ESTs BE111692 MYST histone acetyltransferase (monocytic leukemia) 3 Myst3 306571 NM_001100570 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016573 // histone acetylation // not recorded /// 0016573 // histone acetylation // inferred from sequence or structural similarity /// 0016573 // histone acetylation // inferred from electronic annotation /// 0030099 // myeloid cell differentiation // not recorded /// 0030099 // myeloid cell differentiation // inferred from sequence or structural similarity /// 0030099 // myeloid cell differentiation // inferred from electronic annotation /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0035019 // somatic stem cell maintenance // not recorded /// 0035162 // embryonic hemopoiesis // inferred from electronic annotation /// 0035162 // embryonic hemopoiesis // not recorded /// 0043966 // histone H3 acetylation // not recorded /// 0043966 // histone H3 acetylation // inferred from sequence or structural similarity /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0070776 // MOZ/MORF histone acetyltransferase complex // not recorded /// 0070776 // MOZ/MORF histone acetyltransferase complex // inferred from sequence or structural similarity /// 0070776 // MOZ/MORF histone acetyltransferase complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // not recorded /// 0004402 // histone acetyltransferase activity // inferred from sequence or structural similarity /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from sequence or structural similarity /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016407 // acetyltransferase activity // not recorded /// 0016407 // acetyltransferase activity // inferred from sequence or structural similarity /// 0016407 // acetyltransferase activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391702_at BM389392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389392 /DB_XREF=gi:18189445 /DB_XREF=UI-R-CN1-cjk-i-09-0-UI.s1 /CLONE=UI-R-CN1-cjk-i-09-0-UI /FEA=EST /CNT=3 /TID=Rn.15240.1 /TIER=ConsEnd /STK=2 /UG=Rn.15240 /UG_TITLE=ESTs BM389392 Zinc finger protein 446 Zfp446 308365 1391703_at BF414253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414253 /DB_XREF=gi:11402242 /DB_XREF=UI-R-BJ2-boo-c-02-0-UI.s1 /CLONE=UI-R-BJ2-boo-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.34492.1 /TIER=ConsEnd /STK=2 /UG=Rn.34492 /UG_TITLE=ESTs, Highly similar to ORC4 MOUSE ORIGIN RECOGNITION COMPLEX SUBUNIT 4 (M.musculus) BF414253 origin recognition complex, subunit 4-like (yeast) Orc4l 295596 NM_199092 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded /// 0006270 // DNA-dependent DNA replication initiation // not recorded /// 0006270 // DNA-dependent DNA replication initiation // inferred from sequence or structural similarity /// 0006270 // DNA-dependent DNA replication initiation // inferred from electronic annotation 0000808 // origin recognition complex // inferred from electronic annotation /// 0000808 // origin recognition complex // not recorded /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0000166 // nucleotide binding // not recorded /// 0000166 // nucleotide binding // inferred from sequence or structural similarity /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003688 // DNA replication origin binding // not recorded /// 0003688 // DNA replication origin binding // inferred from sequence or structural similarity /// 0003688 // DNA replication origin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1391704_at BE103189 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103189 /DB_XREF=gi:8495253 /DB_XREF=UI-R-BT1-aqx-b-11-0-UI.s1 /CLONE=UI-R-BT1-aqx-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.49212.1 /TIER=ConsEnd /STK=2 /UG=Rn.49212 /UG_TITLE=ESTs BE103189 C1q and tumor necrosis factor related protein 4 C1qtnf4 311184 NM_001107745 1391705_at BI275644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275644 /DB_XREF=gi:14919758 /DB_XREF=UI-R-CW0-bwm-a-03-0-UI.s1 /CLONE=UI-R-CW0-bwm-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.28668.1 /TIER=ConsEnd /STK=2 /UG=Rn.28668 /UG_TITLE=ESTs BI275644 1391706_at AI715113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715113 /DB_XREF=gi:5032366 /DB_XREF=UI-R-Y0-abl-c-09-0-UI.s1 /CLONE=UI-R-Y0-abl-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.44947.1 /TIER=ConsEnd /STK=2 /UG=Rn.44947 /UG_TITLE=ESTs AI715113 1391707_at AI408920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408920 /DB_XREF=gi:4252424 /DB_XREF=EST237211 /CLONE=RKIDR46 /FEA=EST /CNT=3 /TID=Rn.43431.1 /TIER=ConsEnd /STK=2 /UG=Rn.43431 /UG_TITLE=ESTs AI408920 1391708_at BE096515 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096515 /DB_XREF=gi:8487446 /DB_XREF=UI-R-BU0-aph-a-09-0-UI.s1 /CLONE=UI-R-BU0-aph-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.49105.1 /TIER=ConsEnd /STK=2 /UG=Rn.49105 /UG_TITLE=ESTs BE096515 1391709_at BE108699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108699 /DB_XREF=gi:8500804 /DB_XREF=UI-R-CA0-axh-d-07-0-UI.s1 /CLONE=UI-R-CA0-axh-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.51589.1 /TIER=ConsEnd /STK=2 /UG=Rn.51589 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) BE108699 zinc finger protein 157 Zfp157 360775 NM_001170404 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391710_at AW251144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251144 /DB_XREF=gi:6594700 /DB_XREF=UI-R-BJ0-adi-b-11-0-UI.s1 /CLONE=UI-R-BJ0-adi-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.44668.1 /TIER=ConsEnd /STK=2 /UG=Rn.44668 /UG_TITLE=ESTs AW251144 1391711_at BM386534 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386534 /DB_XREF=gi:18186587 /DB_XREF=UI-R-CN1-cjg-c-10-0-UI.s1 /CLONE=UI-R-CN1-cjg-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.54190.1 /TIER=ConsEnd /STK=2 /UG=Rn.54190 /UG_TITLE=ESTs BM386534 1391712_at BM387888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387888 /DB_XREF=gi:18187941 /DB_XREF=UI-R-CN1-cjk-l-11-0-UI.s1 /CLONE=UI-R-CN1-cjk-l-11-0-UI /FEA=EST /CNT=3 /TID=Rn.19571.1 /TIER=ConsEnd /STK=2 /UG=Rn.19571 /UG_TITLE=ESTs BM387888 1391713_at BE112609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112609 /DB_XREF=gi:8504714 /DB_XREF=UI-R-BJ1-avn-f-05-0-UI.s1 /CLONE=UI-R-BJ1-avn-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.39293.1 /TIER=ConsEnd /STK=2 /UG=Rn.39293 /UG_TITLE=ESTs BE112609 similar to chromosome 9 open reading frame 5 RGD1308958 298020 XM_001059736 /// XM_216388 1391714_at BI290063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290063 /DB_XREF=gi:14948279 /DB_XREF=UI-R-DK0-cfr-d-07-0-UI.s1 /CLONE=UI-R-DK0-cfr-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.39161.1 /TIER=ConsEnd /STK=2 /UG=Rn.39161 /UG_TITLE=ESTs BI290063 pleiomorphic adenoma gene 1 Plag1 297804 NM_001008316 0006350 // transcription // inferred from electronic annotation /// 0022612 // gland morphogenesis // inferred from electronic annotation /// 0022612 // gland morphogenesis // not recorded /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded /// 0035265 // organ growth // inferred from electronic annotation /// 0035265 // organ growth // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0060736 // prostate gland growth // inferred from electronic annotation /// 0060736 // prostate gland growth // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391715_at BF288175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288175 /DB_XREF=gi:11219245 /DB_XREF=EST452766 /CLONE=RGIGQ43 /FEA=EST /CNT=3 /TID=Rn.49909.1 /TIER=ConsEnd /STK=2 /UG=Rn.49909 /UG_TITLE=ESTs BF288175 1391716_at BE114163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114163 /DB_XREF=gi:8506268 /DB_XREF=UI-R-BJ1-awj-g-10-0-UI.s1 /CLONE=UI-R-BJ1-awj-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.47815.1 /TIER=ConsEnd /STK=2 /UG=Rn.47815 /UG_TITLE=ESTs BE114163 1391717_at AW530220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530220 /DB_XREF=gi:7172634 /DB_XREF=UI-R-BU0-amu-a-05-0-UI.s1 /CLONE=UI-R-BU0-amu-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.44960.1 /TIER=ConsEnd /STK=2 /UG=Rn.44960 /UG_TITLE=ESTs AW530220 1391718_at AW527295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527295 /DB_XREF=gi:7169709 /DB_XREF=UI-R-BO1-ajs-f-09-0-UI.s1 /CLONE=UI-R-BO1-ajs-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.46486.1 /TIER=ConsEnd /STK=2 /UG=Rn.46486 /UG_TITLE=ESTs AW527295 1391719_at BE098936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098936 /DB_XREF=gi:8490810 /DB_XREF=UI-R-BJ1-atg-e-06-0-UI.s1 /CLONE=UI-R-BJ1-atg-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.12536.1 /TIER=ConsEnd /STK=2 /UG=Rn.12536 /UG_TITLE=ESTs BE098936 1391720_at AW528396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528396 /DB_XREF=gi:7170810 /DB_XREF=UI-R-BT1-ajx-h-12-0-UI.s1 /CLONE=UI-R-BT1-ajx-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.46862.1 /TIER=ConsEnd /STK=2 /UG=Rn.46862 /UG_TITLE=ESTs AW528396 1391721_at AI009102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009102 /DB_XREF=gi:3222934 /DB_XREF=EST203553 /CLONE=REMBI63 /FEA=EST /CNT=3 /TID=Rn.19506.1 /TIER=ConsEnd /STK=2 /UG=Rn.19506 /UG_TITLE=ESTs AI009102 1391722_at BI289088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289088 /DB_XREF=gi:14946298 /DB_XREF=UI-R-DK0-cfe-d-05-0-UI.s1 /CLONE=UI-R-DK0-cfe-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.24054.1 /TIER=ConsEnd /STK=2 /UG=Rn.24054 /UG_TITLE=ESTs, Moderately similar to HBP2_HUMAN HEAT SHOCK FACTOR 2 BINDING PROTEIN (H.sapiens) BI289088 heat shock transcription factor 2 binding protein Hsf2bp 499413 NM_001127683 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 1391723_at BI291869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291869 /DB_XREF=gi:14951825 /DB_XREF=UI-R-DN0-ciu-c-09-0-UI.s1 /CLONE=UI-R-DN0-ciu-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.14899.1 /TIER=ConsEnd /STK=2 /UG=Rn.14899 /UG_TITLE=ESTs BI291869 1391724_at AI102641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102641 /DB_XREF=gi:3707362 /DB_XREF=EST211930 /CLONE=REMBQ39 /FEA=EST /CNT=3 /TID=Rn.28177.1 /TIER=ConsEnd /STK=2 /UG=Rn.28177 /UG_TITLE=ESTs AI102641 1391725_at BI289277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289277 /DB_XREF=gi:14946678 /DB_XREF=UI-R-DK0-cfk-d-09-0-UI.s1 /CLONE=UI-R-DK0-cfk-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.18260.1 /TIER=ConsEnd /STK=2 /UG=Rn.18260 /UG_TITLE=ESTs BI289277 1391726_at AI012408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012408 /DB_XREF=gi:3226240 /DB_XREF=EST206859 /CLONE=RPLAW80 /FEA=EST /CNT=3 /TID=Rn.65404.1 /TIER=ConsEnd /STK=2 /UG=Rn.65404 /UG_TITLE=ESTs AI012408 1391727_at BG662710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG662710 /DB_XREF=gi:13884632 /DB_XREF=DRA02C08 /CLONE=DRA02C08 /FEA=EST /CNT=3 /TID=Rn.45204.1 /TIER=ConsEnd /STK=2 /UG=Rn.45204 /UG_TITLE=ESTs BG662710 1391728_at BE117944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117944 /DB_XREF=gi:8510049 /DB_XREF=UI-R-BS1-azm-g-11-0-UI.s1 /CLONE=UI-R-BS1-azm-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.51636.1 /TIER=ConsEnd /STK=2 /UG=Rn.51636 /UG_TITLE=ESTs, Highly similar to mab-21-like 1 (C. elegans) (Mus musculus) (M.musculus) BE117944 mab-21-like 2 (C. elegans) Mab21l2 680102 NM_001109391 0008284 // positive regulation of cell proliferation // not recorded /// 0010172 // embryonic body morphogenesis // not recorded /// 0043010 // camera-type eye development // not recorded 0005634 // nucleus // not recorded 1391729_at BF409212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409212 /DB_XREF=gi:11397187 /DB_XREF=UI-R-BT1-bkn-d-03-0-UI.s1 /CLONE=UI-R-BT1-bkn-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.47716.1 /TIER=ConsEnd /STK=2 /UG=Rn.47716 /UG_TITLE=ESTs BF409212 1391730_at AW433989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433989 /DB_XREF=gi:6965296 /DB_XREF=UI-R-BJ0p-afn-h-12-0-UI.s1 /CLONE=UI-R-BJ0p-afn-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.35488.1 /TIER=ConsEnd /STK=2 /UG=Rn.35488 /UG_TITLE=ESTs AW433989 1391731_at BI292410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292410 /DB_XREF=gi:14952878 /DB_XREF=UI-R-DN0-civ-d-04-0-UI.s1 /CLONE=UI-R-DN0-civ-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.45678.1 /TIER=ConsEnd /STK=2 /UG=Rn.45678 /UG_TITLE=ESTs, Highly similar to I58311 HMG-box containing protein 1 - rat (R.norvegicus) BI292410 1391732_at BI278779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278779 /DB_XREF=gi:14925967 /DB_XREF=UI-R-CZ0-bzb-g-05-0-UI.s1 /CLONE=UI-R-CZ0-bzb-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.57214.1 /TIER=ConsEnd /STK=2 /UG=Rn.57214 /UG_TITLE=ESTs BI278779 1391733_at BE116541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116541 /DB_XREF=gi:8508646 /DB_XREF=UI-R-BS1-ayj-d-11-0-UI.s1 /CLONE=UI-R-BS1-ayj-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.2919.1 /TIER=ConsEnd /STK=2 /UG=Rn.2919 /UG_TITLE=ESTs BE116541 1391734_at AA956267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956267 /DB_XREF=gi:4238661 /DB_XREF=UI-R-E1-fe-h-06-0-UI.s1 /CLONE=UI-R-E1-fe-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.32837.1 /TIER=ConsEnd /STK=2 /UG=Rn.32837 /UG_TITLE=ESTs AA956267 1391735_at AW528011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528011 /DB_XREF=gi:7170425 /DB_XREF=UI-R-BT1-akg-f-09-0-UI.s1 /CLONE=UI-R-BT1-akg-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.46176.1 /TIER=ConsEnd /STK=2 /UG=Rn.46176 /UG_TITLE=ESTs AW528011 1391736_at BG376666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376666 /DB_XREF=gi:13301138 /DB_XREF=UI-R-CU0-buq-d-11-0-UI.s1 /CLONE=UI-R-CU0-buq-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.66409.1 /TIER=ConsEnd /STK=2 /UG=Rn.66409 /UG_TITLE=ESTs, Highly similar to T46306 hypothetical protein DKFZp434D2411.1 (H.sapiens) BG376666 limb region 1-like homolog (mouse) Lmbr1l 300215 NM_001013950 1391737_at AW526210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526210 /DB_XREF=gi:7168595 /DB_XREF=UI-R-BO1-aju-d-07-0-UI.s1 /CLONE=UI-R-BO1-aju-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.46120.1 /TIER=ConsEnd /STK=2 /UG=Rn.46120 /UG_TITLE=ESTs, Highly similar to neutrophil cytosolic factor 4 (Mus musculus) (M.musculus) AW526210 neutrophil cytosolic factor 4 Ncf4 500904 NM_001127304 0007154 // cell communication // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0016020 // membrane // not recorded /// 0043020 // NADPH oxidase complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1391738_at BF389673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389673 /DB_XREF=gi:11374508 /DB_XREF=UI-R-BS2-bdn-d-07-0-UI.s1 /CLONE=UI-R-BS2-bdn-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.56984.1 /TIER=ConsEnd /STK=2 /UG=Rn.56984 /UG_TITLE=ESTs BF389673 1391739_at BF393038 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393038 /DB_XREF=gi:11377898 /DB_XREF=UI-R-CA0-bgp-c-08-0-UI.s1 /CLONE=UI-R-CA0-bgp-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.61277.1 /TIER=ConsEnd /STK=2 /UG=Rn.61277 /UG_TITLE=ESTs, Weakly similar to T19D7.4.p (Caenorhabditis elegans) (C.elegans) BF393038 RUN domain containing 1 Rundc1 303552 XM_001081465 1391740_at BE116140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116140 /DB_XREF=gi:8508245 /DB_XREF=UI-R-BS1-axz-h-06-0-UI.s1 /CLONE=UI-R-BS1-axz-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.35461.1 /TIER=ConsEnd /STK=2 /UG=Rn.35461 /UG_TITLE=ESTs BE116140 1391741_a_at AA901290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901290 /DB_XREF=gi:4233791 /DB_XREF=UI-R-A1-dp-b-01-0-UI.s1 /CLONE=UI-R-A1-dp-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.15212.1 /TIER=ConsEnd /STK=2 /UG=Rn.15212 /UG_TITLE=ESTs AA901290 1391742_at BI296945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296945 /DB_XREF=gi:14961868 /DB_XREF=UI-R-DK0-cgj-d-08-0-UI.s1 /CLONE=UI-R-DK0-cgj-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.72735.1 /TIER=ConsEnd /STK=2 /UG=Rn.72735 /UG_TITLE=ESTs BI296945 1391743_at BE104552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104552 /DB_XREF=gi:8496652 /DB_XREF=UI-R-BX0-arq-g-02-0-UI.s1 /CLONE=UI-R-BX0-arq-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.23919.1 /TIER=ConsEnd /STK=2 /UG=Rn.23919 /UG_TITLE=ESTs, Weakly similar to HUD RAT PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD HOMOLOG (R.norvegicus) BE104552 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R) Elavl1 363854 NM_001108848 0048255 // mRNA stabilization // not recorded /// 0070935 // 3'-UTR-mediated mRNA stabilization // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0042802 // identical protein binding // not recorded 1391744_at AI548028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548028 /DB_XREF=gi:4465516 /DB_XREF=UI-R-C3-tc-f-02-0-UI.s1 /CLONE=UI-R-C3-tc-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.41758.1 /TIER=ConsEnd /STK=2 /UG=Rn.41758 /UG_TITLE=ESTs AI548028 1391745_at BI287873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287873 /DB_XREF=gi:14943906 /DB_XREF=UI-R-CW0s-ccm-c-02-0-UI.s1 /CLONE=UI-R-CW0s-ccm-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.32735.1 /TIER=ConsEnd /STK=2 /UG=Rn.32735 /UG_TITLE=ESTs BI287873 1391746_at BI296076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296076 /DB_XREF=gi:14960157 /DB_XREF=UI-R-DK0-cew-a-10-0-UI.s1 /CLONE=UI-R-DK0-cew-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.47213.1 /TIER=ConsEnd /STK=2 /UG=Rn.47213 /UG_TITLE=ESTs BI296076 1391747_at BE109766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109766 /DB_XREF=gi:8501871 /DB_XREF=UI-R-BJ1-aup-h-09-0-UI.s1 /CLONE=UI-R-BJ1-aup-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.51739.1 /TIER=ConsEnd /STK=2 /UG=Rn.51739 /UG_TITLE=ESTs BE109766 RNA binding motif protein 12 Rbm12 652928 NM_001037657 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391748_at AI044898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044898 /DB_XREF=gi:3291717 /DB_XREF=UI-R-C1-kk-c-02-0-UI.s1 /CLONE=UI-R-C1-kk-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.63885.1 /TIER=ConsEnd /STK=2 /UG=Rn.63885 /UG_TITLE=ESTs AI044898 Myb-related transcription factor, partner of profilin Mypop 499090 NM_001109139 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1391749_a_at AW535122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535122 /DB_XREF=gi:7177536 /DB_XREF=UI-R-C4-als-e-01-0-UI.s1 /CLONE=UI-R-C4-als-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.15096.1 /TIER=ConsEnd /STK=2 /UG=Rn.15096 /UG_TITLE=ESTs AW535122 nucleoredoxin-like 2 Nxnl2 689232 NM_001170429 1391750_at AI071624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071624 /DB_XREF=gi:3397839 /DB_XREF=UI-R-C2-mw-d-08-0-UI.s1 /CLONE=UI-R-C2-mw-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.33485.1 /TIER=ConsEnd /STK=2 /UG=Rn.33485 /UG_TITLE=ESTs AI071624 1391751_at BE107919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107919 /DB_XREF=gi:8500024 /DB_XREF=UI-R-CA0-awy-c-11-0-UI.s1 /CLONE=UI-R-CA0-awy-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.49126.1 /TIER=ConsEnd /STK=2 /UG=Rn.49126 /UG_TITLE=ESTs BE107919 Family with sequence similarity 154, member A Fam154a 679802 XM_001054528 1391752_at BF394182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394182 /DB_XREF=gi:11379046 /DB_XREF=UI-R-CA0-bhb-b-09-0-UI.s1 /CLONE=UI-R-CA0-bhb-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.62732.1 /TIER=ConsEnd /STK=2 /UG=Rn.62732 /UG_TITLE=ESTs BF394182 1391753_at BI288825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288825 /DB_XREF=gi:14945781 /DB_XREF=UI-R-DK0-cdf-c-12-0-UI.s1 /CLONE=UI-R-DK0-cdf-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.52097.1 /TIER=ConsEnd /STK=2 /UG=Rn.52097 /UG_TITLE=ESTs BI288825 1391754_at BM391818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391818 /DB_XREF=gi:18191871 /DB_XREF=UI-R-DO1-cmk-b-16-0-UI.s1 /CLONE=UI-R-DO1-cmk-b-16-0-UI /FEA=EST /CNT=3 /TID=Rn.18178.1 /TIER=ConsEnd /STK=2 /UG=Rn.18178 /UG_TITLE=ESTs BM391818 2 ' -5 ' oligoadenylate synthetase 1I Oas1i 304507 NM_001009680 0006955 // immune response // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1391755_at AI535177 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535177 /DB_XREF=gi:4449312 /DB_XREF=UI-R-C3-sq-f-06-0-UI.s1 /CLONE=UI-R-C3-sq-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.26964.1 /TIER=ConsEnd /STK=2 /UG=Rn.26964 /UG_TITLE=ESTs AI535177 1391756_at BI277904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277904 /DB_XREF=gi:14924231 /DB_XREF=UI-R-CX0-bxk-h-07-0-UI.s1 /CLONE=UI-R-CX0-bxk-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.67535.1 /TIER=ConsEnd /STK=2 /UG=Rn.67535 /UG_TITLE=ESTs BI277904 rCG54026-like /// rCG54026-like LOC100362394 /// LOC100365991 100362394 /// 100365991 XM_002725584 /// XM_002728707 1391757_at AA926072 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926072 /DB_XREF=gi:4237263 /DB_XREF=UI-R-A1-eu-a-05-0-UI.s1 /CLONE=UI-R-A1-eu-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.25328.1 /TIER=ConsEnd /STK=2 /UG=Rn.25328 /UG_TITLE=ESTs AA926072 protein tyrosine phosphatase, non-receptor type 4 Ptpn4 246116 NM_001100479 0016311 // dephosphorylation // not recorded 0004726 // non-membrane spanning protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004726 // non-membrane spanning protein tyrosine phosphatase activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391758_at BE109438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109438 /DB_XREF=gi:8501583 /DB_XREF=UI-R-BJ1-aut-f-04-0-UI.s1 /CLONE=UI-R-BJ1-aut-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.72878.1 /TIER=ConsEnd /STK=2 /UG=Rn.72878 /UG_TITLE=ESTs BE109438 1391759_at BF283873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283873 /DB_XREF=gi:11214943 /DB_XREF=EST448464 /CLONE=RGIEH58 /FEA=EST /CNT=3 /TID=Rn.33066.1 /TIER=ConsEnd /STK=2 /UG=Rn.33066 /UG_TITLE=ESTs BF283873 1391760_at BI293190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293190 /DB_XREF=gi:14954453 /DB_XREF=UI-R-DK0-cdk-g-09-0-UI.s1 /CLONE=UI-R-DK0-cdk-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.16892.1 /TIER=ConsEnd /STK=2 /UG=Rn.16892 /UG_TITLE=ESTs BI293190 1391761_at AW531798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531798 /DB_XREF=gi:7174212 /DB_XREF=UI-R-C4-akz-b-10-0-UI.s1 /CLONE=UI-R-C4-akz-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.47819.1 /TIER=ConsEnd /STK=2 /UG=Rn.47819 /UG_TITLE=ESTs, Moderately similar to 2201442A chitotriosidase (H.sapiens) AW531798 chitinase 1 (chitotriosidase) Chit1 289032 NM_001079689 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006030 // chitin metabolic process // inferred from electronic annotation /// 0006032 // chitin catabolic process // inferred from electronic annotation /// 0006032 // chitin catabolic process // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004568 // chitinase activity // inferred from electronic annotation /// 0008061 // chitin binding // inferred from electronic annotation /// 0008843 // endochitinase activity // inferred from electronic annotation /// 0008843 // endochitinase activity // not recorded /// 0043169 // cation binding // inferred from electronic annotation 1391762_at BF407454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407454 /DB_XREF=gi:11395429 /DB_XREF=UI-R-BJ2-bqs-d-10-0-UI.s1 /CLONE=UI-R-BJ2-bqs-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.63481.1 /TIER=ConsEnd /STK=2 /UG=Rn.63481 /UG_TITLE=ESTs, Highly similar to VINE_MOUSE VINEXIN (SH3-CONTAINING ADAPTER MOLECULE-1) (SCAM-1) (SH3 DOMAIN-CONTAINING PROTEIN SH3P3) (M.musculus) BF407454 sorbin and SH3 domain containing 3 Sorbs3 282843 NM_001005762 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006936 // muscle contraction // not recorded /// 0031589 // cell-substrate adhesion // not recorded /// 0031589 // cell-substrate adhesion // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0051496 // positive regulation of stress fiber assembly // not recorded /// 0051496 // positive regulation of stress fiber assembly // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0017166 // vinculin binding // not recorded /// 0017166 // vinculin binding // inferred from electronic annotation 1391763_at BF420184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420184 /DB_XREF=gi:11408173 /DB_XREF=UI-R-BJ2-bpj-h-10-0-UI.s1 /CLONE=UI-R-BJ2-bpj-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.63688.1 /TIER=ConsEnd /STK=2 /UG=Rn.63688 /UG_TITLE=ESTs BF420184 1391764_at BE119571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119571 /DB_XREF=gi:8511676 /DB_XREF=UI-R-CA0-bag-d-02-0-UI.s1 /CLONE=UI-R-CA0-bag-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.53284.1 /TIER=ConsEnd /STK=2 /UG=Rn.53284 /UG_TITLE=ESTs BE119571 1391765_at BM383632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383632 /DB_XREF=gi:18183685 /DB_XREF=UI-R-DM1-cka-h-12-0-UI.s1 /CLONE=UI-R-DM1-cka-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.49706.1 /TIER=ConsEnd /STK=2 /UG=Rn.49706 /UG_TITLE=ESTs BM383632 leucine rich repeat containing 48 Lrrc48 287371 NM_001013857 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation 1391766_at AI502121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502121 /DB_XREF=gi:4399966 /DB_XREF=UI-R-C2p-rx-c-09-0-UI.s2 /CLONE=UI-R-C2p-rx-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.19322.1 /TIER=ConsEnd /STK=2 /UG=Rn.19322 /UG_TITLE=ESTs AI502121 heparan sulfate (glucosamine) 3-O-sulfotransferase 5 Hs3st5 294449 NM_001106392 0006477 // protein sulfation // not recorded /// 0015015 // heparan sulfate proteoglycan biosynthetic process, enzymatic modification // not recorded /// 0046596 // regulation of virion penetration into host cell // not recorded /// 0050819 // negative regulation of coagulation // not recorded 0005515 // protein binding // not recorded /// 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0008467 // [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation 1391767_at AI548603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548603 /DB_XREF=gi:4466091 /DB_XREF=UI-R-C3-td-h-09-0-UI.s1 /CLONE=UI-R-C3-td-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.48988.1 /TIER=ConsEnd /STK=2 /UG=Rn.48988 /UG_TITLE=ESTs AI548603 1391768_at AA849680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849680 /DB_XREF=gi:2937220 /DB_XREF=EST192447 /CLONE=RMUAH60 /FEA=EST /CNT=3 /TID=Rn.43484.1 /TIER=ConsEnd /STK=2 /UG=Rn.43484 /UG_TITLE=ESTs AA849680 proteasome (prosome, macropain) 26S subunit, ATPase, 4 Psmc4 117262 NM_057122 0001824 // blastocyst development // inferred from electronic annotation /// 0001824 // blastocyst development // not recorded /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // traceable author statement /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1391769_at AI502278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502278 /DB_XREF=gi:4400129 /DB_XREF=UI-R-C1-kj-h-05-0-UI.s1 /CLONE=UI-R-C1-kj-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.35389.1 /TIER=ConsEnd /STK=2 /UG=Rn.35389 /UG_TITLE=ESTs AI502278 1391770_at BE108244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108244 /DB_XREF=gi:8500349 /DB_XREF=UI-R-BS1-ayx-a-09-0-UI.s1 /CLONE=UI-R-BS1-ayx-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.53914.1 /TIER=ConsEnd /STK=2 /UG=Rn.53914 /UG_TITLE=ESTs BE108244 Ubiquitin specific peptidase 33 Usp33 310960 NM_001191094 /// XM_001068666 /// XM_001080019 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0008277 // regulation of G-protein coupled receptor protein signaling pathway // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016579 // protein deubiquitination // not recorded /// 0016579 // protein deubiquitination // inferred from electronic annotation /// 0070536 // protein K63-linked deubiquitination // inferred from electronic annotation /// 0070536 // protein K63-linked deubiquitination // not recorded /// 0071108 // protein K48-linked deubiquitination // inferred from electronic annotation /// 0071108 // protein K48-linked deubiquitination // not recorded 0001664 // G-protein-coupled receptor binding // inferred from electronic annotation /// 0001664 // G-protein-coupled receptor binding // not recorded /// 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004197 // cysteine-type endopeptidase activity // not recorded /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0043130 // ubiquitin binding // not recorded 1391771_at AA963859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963859 /DB_XREF=gi:4278801 /DB_XREF=UI-R-E1-gk-a-09-0-UI.s1 /CLONE=UI-R-E1-gk-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.45095.1 /TIER=ConsEnd /STK=2 /UG=Rn.45095 /UG_TITLE=ESTs, Highly similar to CALCIUM-TRANSPORTING ATPASE SARCOPLASMIC RETICULUM TYPE, CLASS 2 ISOFORM (R.norvegicus) AA963859 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 Atp2a2 29693 NM_001110139 /// NM_001110823 /// NR_027839 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002026 // regulation of the force of heart contraction // not recorded /// 0006200 // ATP catabolic process // not recorded /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006937 // regulation of muscle contraction // traceable author statement /// 0006984 // ER-nucleus signaling pathway // inferred from electronic annotation /// 0006984 // ER-nucleus signaling pathway // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0045822 // negative regulation of heart contraction // inferred from electronic annotation /// 0045822 // negative regulation of heart contraction // not recorded /// 0070588 // calcium ion transmembrane transport // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // not recorded /// 0016529 // sarcoplasmic reticulum // traceable author statement /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0033017 // sarcoplasmic reticulum membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // inferred from direct assay /// 0005388 // calcium-transporting ATPase activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // not recorded /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0031775 // lutropin-choriogonadotropic hormone receptor binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048155 // S100 alpha binding // inferred from electronic annotation /// 0048155 // S100 alpha binding // not recorded 1391772_at BF414775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414775 /DB_XREF=gi:11402764 /DB_XREF=UI-R-BJ2-bow-h-08-0-UI.s1 /CLONE=UI-R-BJ2-bow-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.47859.1 /TIER=ConsEnd /STK=2 /UG=Rn.47859 /UG_TITLE=ESTs, Weakly similar to AT motif-binding factor (M.musculus) BF414775 rCG28200-like LOC100362325 100362325 XM_002726343 /// XM_002729301 1391773_at BM390802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390802 /DB_XREF=gi:18190855 /DB_XREF=UI-R-CN1-cjo-f-06-0-UI.s1 /CLONE=UI-R-CN1-cjo-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.46600.1 /TIER=ConsEnd /STK=2 /UG=Rn.46600 /UG_TITLE=ESTs BM390802 1391774_at AW526131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526131 /DB_XREF=gi:7168516 /DB_XREF=UI-R-BO1-aiz-e-09-0-UI.s1 /CLONE=UI-R-BO1-aiz-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.46095.1 /TIER=ConsEnd /STK=2 /UG=Rn.46095 /UG_TITLE=ESTs AW526131 1391775_at BE107879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107879 /DB_XREF=gi:8499984 /DB_XREF=UI-R-CA0-awx-h-06-0-UI.s1 /CLONE=UI-R-CA0-awx-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.51329.1 /TIER=ConsEnd /STK=2 /UG=Rn.51329 /UG_TITLE=ESTs BE107879 zona pellucida binding protein 2 Zpbp2 363676 NM_001007011 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 1391776_at BF403524 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403524 /DB_XREF=gi:11391499 /DB_XREF=UI-R-CA1-biz-l-24-0-UI.s1 /CLONE=UI-R-CA1-biz-l-24-0-UI /FEA=EST /CNT=3 /TID=Rn.60294.1 /TIER=ConsEnd /STK=2 /UG=Rn.60294 /UG_TITLE=ESTs BF403524 COX assembly mitochondrial protein homolog (S. cerevisiae) Cmc1 363162 NM_001135259 0005739 // mitochondrion // not recorded 1391777_at AI177368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177368 /DB_XREF=gi:3728006 /DB_XREF=EST220987 /CLONE=RPLBY22 /FEA=EST /CNT=3 /TID=Rn.24148.1 /TIER=ConsEnd /STK=2 /UG=Rn.24148 /UG_TITLE=ESTs AI177368 1391778_at BF401619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401619 /DB_XREF=gi:11389594 /DB_XREF=UI-R-CA0-bgm-g-01-0-UI.s1 /CLONE=UI-R-CA0-bgm-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.59827.1 /TIER=ConsEnd /STK=2 /UG=Rn.59827 /UG_TITLE=ESTs BF401619 1391779_at AA997862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997862 /DB_XREF=gi:4285856 /DB_XREF=UI-R-C0-hu-d-08-0-UI.s1 /CLONE=UI-R-C0-hu-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.33110.1 /TIER=ConsEnd /STK=2 /UG=Rn.33110 /UG_TITLE=ESTs AA997862 1391780_at BG373221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373221 /DB_XREF=gi:13269758 /DB_XREF=UI-R-CV1-brw-b-07-0-UI.s1 /CLONE=UI-R-CV1-brw-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.32450.1 /TIER=ConsEnd /STK=2 /UG=Rn.32450 /UG_TITLE=ESTs BG373221 family with sequence similarity 46, member B Fam46b 313019 NM_001107907 1391781_at BE097788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097788 /DB_XREF=gi:8488719 /DB_XREF=UI-R-BO1-aqb-g-03-0-UI.s1 /CLONE=UI-R-BO1-aqb-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.21649.1 /TIER=ConsEnd /STK=2 /UG=Rn.21649 /UG_TITLE=ESTs BE097788 1391782_at AI555247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555247 /DB_XREF=gi:4487610 /DB_XREF=UI-R-C2p-qv-c-08-0-UI.s1 /CLONE=UI-R-C2p-qv-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.43034.1 /TIER=ConsEnd /STK=2 /UG=Rn.43034 /UG_TITLE=ESTs AI555247 1391783_at BE120603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120603 /DB_XREF=gi:8512708 /DB_XREF=UI-R-CA0-bav-d-11-0-UI.s1 /CLONE=UI-R-CA0-bav-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.53060.1 /TIER=ConsEnd /STK=2 /UG=Rn.53060 /UG_TITLE=ESTs BE120603 1391784_at AI764765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764765 /DB_XREF=gi:5210700 /DB_XREF=UI-R-Y0-ace-g-11-0-UI.s1 /CLONE=UI-R-Y0-ace-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.41648.1 /TIER=ConsEnd /STK=2 /UG=Rn.41648 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) AI764765 replication initiator 1 Repin1 445541 NM_001005893 0006260 // DNA replication // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391785_at BE115309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115309 /DB_XREF=gi:8507414 /DB_XREF=UI-R-CA0-axr-g-03-0-UI.s1 /CLONE=UI-R-CA0-axr-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.49198.1 /TIER=ConsEnd /STK=2 /UG=Rn.49198 /UG_TITLE=ESTs, Highly similar to B39521 glycine dehydrogenase (H.sapiens) BE115309 glycine dehydrogenase (decarboxylating) Gldc 309312 NM_001107583 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006544 // glycine metabolic process // inferred from electronic annotation /// 0019464 // glycine decarboxylation via glycine cleavage system // inferred from direct assay /// 0019464 // glycine decarboxylation via glycine cleavage system // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005960 // glycine cleavage complex // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004375 // glycine dehydrogenase (decarboxylating) activity // inferred from direct assay /// 0004375 // glycine dehydrogenase (decarboxylating) activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0016594 // glycine binding // inferred from direct assay /// 0016829 // lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from direct assay /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from direct assay 1391786_at BI297047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297047 /DB_XREF=gi:14962072 /DB_XREF=UI-R-DK0-cgk-f-05-0-UI.s1 /CLONE=UI-R-DK0-cgk-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.49642.1 /TIER=ConsEnd /STK=2 /UG=Rn.49642 /UG_TITLE=ESTs BI297047 Heterogeneous nuclear ribonucleoprotein H2 (H') Hnrnph2 308650 NM_001014019 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391787_at AI059620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059620 /DB_XREF=gi:3333397 /DB_XREF=UI-R-C1-le-a-11-0-UI.s1 /CLONE=UI-R-C1-le-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.19232.1 /TIER=ConsEnd /STK=2 /UG=Rn.19232 /UG_TITLE=ESTs AI059620 TRAF3 interacting protein 3 Traf3ip3 360900 NM_001014132 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391788_at BF406814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406814 /DB_XREF=gi:11394789 /DB_XREF=UI-R-BJ2-bpp-d-09-0-UI.s1 /CLONE=UI-R-BJ2-bpp-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.63804.1 /TIER=ConsEnd /STK=2 /UG=Rn.63804 /UG_TITLE=ESTs BF406814 1391789_at BF555110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555110 /DB_XREF=gi:11664840 /DB_XREF=UI-R-E0-co-g-04-0-UI.r1 /CLONE=UI-R-E0-co-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.65518.1 /TIER=ConsEnd /STK=2 /UG=Rn.65518 /UG_TITLE=ESTs BF555110 thioredoxin-like 1 Txnl1 140922 NM_080887 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0015036 // disulfide oxidoreductase activity // not recorded 1391790_at AI044233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044233 /DB_XREF=gi:3291136 /DB_XREF=UI-R-C1-kb-e-08-0-UI.s2 /CLONE=UI-R-C1-kb-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.19539.1 /TIER=ConsEnd /STK=2 /UG=Rn.19539 /UG_TITLE=ESTs AI044233 1391791_at AI137826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137826 /DB_XREF=gi:3638603 /DB_XREF=UI-R-C0-ie-a-09-0-UI.s1 /CLONE=UI-R-C0-ie-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.32444.1 /TIER=ConsEnd /STK=2 /UG=Rn.32444 /UG_TITLE=ESTs, Weakly similar to T32993 hypothetical protein W02F12.2 - Caenorhabditis elegans (C.elegans) AI137826 alkaline ceramidase 2 Acer2 313339 NM_001107943 0001953 // negative regulation of cell-matrix adhesion // not recorded /// 0006672 // ceramide metabolic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0032526 // response to retinoic acid // not recorded /// 0033629 // negative regulation of cell adhesion mediated by integrin // not recorded /// 0046512 // sphingosine biosynthetic process // not recorded /// 0090285 // negative regulation of protein glycosylation in Golgi // not recorded 0000139 // Golgi membrane // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // not recorded 0016787 // hydrolase activity // inferred from electronic annotation /// 0016811 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides // inferred from electronic annotation /// 0017040 // ceramidase activity // not recorded 1391792_at BF398762 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398762 /DB_XREF=gi:11383726 /DB_XREF=UI-R-BS2-bes-b-09-0-UI.s1 /CLONE=UI-R-BS2-bes-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.33078.1 /TIER=ConsEnd /STK=2 /UG=Rn.33078 /UG_TITLE=ESTs BF398762 1391793_at BF284687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284687 /DB_XREF=gi:11215757 /DB_XREF=EST449278 /CLONE=RGIEU93 /FEA=EST /CNT=3 /TID=Rn.28864.1 /TIER=ConsEnd /STK=2 /UG=Rn.28864 /UG_TITLE=ESTs BF284687 1391794_at BI300542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300542 /DB_XREF=gi:14976822 /DB_XREF=UI-R-CV2-cim-c-01-0-UI.s1 /CLONE=UI-R-CV2-cim-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.53292.1 /TIER=ConsEnd /STK=2 /UG=Rn.53292 /UG_TITLE=ESTs BI300542 1391795_at AW535137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535137 /DB_XREF=gi:7177551 /DB_XREF=UI-R-C4-als-f-05-0-UI.s1 /CLONE=UI-R-C4-als-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.44937.1 /TIER=ConsEnd /STK=2 /UG=Rn.44937 /UG_TITLE=ESTs AW535137 1391796_at AW530615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530615 /DB_XREF=gi:7173029 /DB_XREF=UI-R-C4-ala-d-01-0-UI.s1 /CLONE=UI-R-C4-ala-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.64199.1 /TIER=ConsEnd /STK=2 /UG=Rn.64199 /UG_TITLE=ESTs, Moderately similar to T31432 K-Cl cotransport protein 2, furosemide-sensitive - rat (R.norvegicus) AW530615 solute carrier family 12 (potassium/chloride transporters), member 7 Slc12a7 308069 XM_001060536 /// XM_001071999 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from electronic annotation /// 0006884 // cell volume homeostasis // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0015377 // cation:chloride symporter activity // inferred from electronic annotation /// 0015379 // potassium:chloride symporter activity // traceable author statement 1391797_at AI013317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013317 /DB_XREF=gi:3227373 /DB_XREF=EST207992 /CLONE=RSPBJ44 /FEA=EST /CNT=3 /TID=Rn.79231.1 /TIER=ConsEnd /STK=2 /UG=Rn.79231 /UG_TITLE=ESTs, Highly similar to JC5881 myocyte enhancer factor 2B-1 - mouse (M.musculus) AI013317 myocyte enhancer factor 2B Mef2b 498607 NM_001017507 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1391798_at BF564518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564518 /DB_XREF=gi:11674248 /DB_XREF=UI-R-C4-alv-g-06-0-UI.r1 /CLONE=UI-R-C4-alv-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.48475.1 /TIER=ConsEnd /STK=2 /UG=Rn.48475 /UG_TITLE=ESTs BF564518 1391799_at AA899247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899247 /DB_XREF=gi:4231745 /DB_XREF=UI-R-E0-cz-f-11-0-UI.s1 /CLONE=UI-R-E0-cz-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.22908.1 /TIER=ConsEnd /STK=2 /UG=Rn.22908 /UG_TITLE=ESTs AA899247 1391800_at BF543501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543501 /DB_XREF=gi:11634608 /DB_XREF=UI-R-C3-sz-h-09-0-UI.r1 /CLONE=UI-R-C3-sz-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.23526.1 /TIER=ConsEnd /STK=2 /UG=Rn.23526 /UG_TITLE=ESTs BF543501 hydroxysteroid (17-beta) dehydrogenase 14 Hsd17b14 691018 NM_001191111 /// XM_001076540 /// XM_002725578 0006706 // steroid catabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004303 // estradiol 17-beta-dehydrogenase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0047045 // testosterone 17-beta-dehydrogenase (NADP+) activity // not recorded 1391801_at AI716281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716281 /DB_XREF=gi:5033534 /DB_XREF=UI-R-Y0-aby-a-11-0-UI.s1 /CLONE=UI-R-Y0-aby-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.41385.1 /TIER=ConsEnd /STK=2 /UG=Rn.41385 /UG_TITLE=ESTs AI716281 1391802_at BE107950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107950 /DB_XREF=gi:8500055 /DB_XREF=UI-R-CA0-awy-f-07-0-UI.s1 /CLONE=UI-R-CA0-awy-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.13873.1 /TIER=ConsEnd /STK=2 /UG=Rn.13873 /UG_TITLE=ESTs BE107950 1391803_at BF557813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557813 /DB_XREF=gi:11667543 /DB_XREF=UI-R-C0-gw-g-05-0-UI.r1 /CLONE=UI-R-C0-gw-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.12095.1 /TIER=ConsEnd /STK=2 /UG=Rn.12095 /UG_TITLE=ESTs BF557813 1391804_at AW533795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533795 /DB_XREF=gi:7176209 /DB_XREF=UI-R-BU0-anc-b-12-0-UI.s1 /CLONE=UI-R-BU0-anc-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.41967.1 /TIER=ConsEnd /STK=2 /UG=Rn.41967 /UG_TITLE=ESTs AW533795 1391805_at BE096676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096676 /DB_XREF=gi:8487566 /DB_XREF=UI-R-BU0-api-e-08-0-UI.s1 /CLONE=UI-R-BU0-api-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.26637.1 /TIER=ConsEnd /STK=2 /UG=Rn.26637 /UG_TITLE=ESTs, Weakly similar to MIPP MOUSE MIPP PROTEIN (M.musculus) BE096676 kelch-like 32 (Drosophila) Klhl32 313111 XM_001055962 /// XM_232840 0005515 // protein binding // inferred from electronic annotation 1391806_at AA957557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957557 /DB_XREF=gi:4277447 /DB_XREF=UI-R-E1-gf-f-10-0-UI.s1 /CLONE=UI-R-E1-gf-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.23167.1 /TIER=ConsEnd /STK=2 /UG=Rn.23167 /UG_TITLE=ESTs, Weakly similar to ITH3 RAT INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN H3 PRECURSOR (R.norvegicus) AA957557 similar to inter-alpha-inhibitor H2 chain LOC498793 498793 XR_005459 /// XR_009617 0030212 // hyaluronan metabolic process // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation 1391807_at BF523623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523623 /DB_XREF=gi:11631590 /DB_XREF=UI-R-C1-lc-d-06-0-UI.r1 /CLONE=UI-R-C1-lc-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.32396.1 /TIER=ConsEnd /STK=2 /UG=Rn.32396 /UG_TITLE=ESTs, Highly similar to transcription factor CP2 (Mus musculus) (M.musculus) BF523623 transcription factor CP2 Tcfcp2 315309 NM_001134714 1391808_at AI535140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535140 /DB_XREF=gi:4449275 /DB_XREF=UI-R-C3-sp-f-07-0-UI.s1 /CLONE=UI-R-C3-sp-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.14864.1 /TIER=ConsEnd /STK=2 /UG=Rn.14864 /UG_TITLE=ESTs AI535140 1391809_at BE106814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106814 /DB_XREF=gi:8498916 /DB_XREF=UI-R-BT1-ast-e-03-0-UI.s1 /CLONE=UI-R-BT1-ast-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.49714.1 /TIER=ConsEnd /STK=2 /UG=Rn.49714 /UG_TITLE=ESTs BE106814 1391810_at BI288157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288157 /DB_XREF=gi:14944464 /DB_XREF=UI-R-DK0-cdc-f-01-0-UI.s1 /CLONE=UI-R-DK0-cdc-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.20655.1 /TIER=ConsEnd /STK=2 /UG=Rn.20655 /UG_TITLE=ESTs BI288157 RNA binding motif protein 20 Rbm20 309544 NM_001107611 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1391811_at AI556437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556437 /DB_XREF=gi:4488800 /DB_XREF=UI-R-C2p-rh-e-12-0-UI.s1 /CLONE=UI-R-C2p-rh-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.30329.1 /TIER=ConsEnd /STK=2 /UG=Rn.30329 /UG_TITLE=ESTs AI556437 1391812_at AI145876 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145876 /DB_XREF=gi:3667675 /DB_XREF=UI-R-BT0-qg-b-02-0-UI.s1 /CLONE=UI-R-BT0-qg-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.28649.1 /TIER=ConsEnd /STK=2 /UG=Rn.28649 /UG_TITLE=ESTs AI145876 1391813_at AA892466 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892466 /DB_XREF=gi:3019345 /DB_XREF=EST196269 /CLONE=RKIAQ78 /FEA=EST /CNT=3 /TID=Rn.35013.1 /TIER=ConsEnd /STK=2 /UG=Rn.35013 /UG_TITLE=ESTs AA892466 ankyrin repeat and SOCS box-containing 13 Asb13 361268 NM_001108420 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005515 // protein binding // not recorded 1391814_at BI293690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293690 /DB_XREF=gi:14955427 /DB_XREF=UI-R-DK0-cdu-e-10-0-UI.s1 /CLONE=UI-R-DK0-cdu-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.45328.1 /TIER=ConsEnd /STK=2 /UG=Rn.45328 /UG_TITLE=ESTs BI293690 1391815_at BG664098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664098 /DB_XREF=gi:13886020 /DB_XREF=DRAADA09 /CLONE=DRAADA09 /FEA=EST /CNT=3 /TID=Rn.57867.1 /TIER=ConsEnd /STK=2 /UG=Rn.57867 /UG_TITLE=ESTs BG664098 RNA pseudouridylate synthase domain containing 3 Rpusd3 362416 NM_001108641 0001522 // pseudouridine synthesis // inferred from electronic annotation /// 0009451 // RNA modification // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0009982 // pseudouridine synthase activity // inferred from electronic annotation 1391816_at AI409106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409106 /DB_XREF=gi:4252610 /DB_XREF=EST237398 /CLONE=ROVEN25 /FEA=EST /CNT=3 /TID=Rn.44334.1 /TIER=ConsEnd /STK=2 /UG=Rn.44334 /UG_TITLE=ESTs AI409106 1391817_at AA901178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901178 /DB_XREF=gi:4233679 /DB_XREF=UI-R-E0-dc-g-04-0-UI.s1 /CLONE=UI-R-E0-dc-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.15144.1 /TIER=ConsEnd /STK=2 /UG=Rn.15144 /UG_TITLE=ESTs AA901178 similar to RIKEN cDNA 6330416G13 gene RGD1304595 298104 NM_001106661 1391818_at BI290893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290893 /DB_XREF=gi:14949908 /DB_XREF=UI-R-DK0-cgi-g-06-0-UI.s1 /CLONE=UI-R-DK0-cgi-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.19065.1 /TIER=ConsEnd /STK=2 /UG=Rn.19065 /UG_TITLE=ESTs BI290893 rCG31182-like /// transmembrane and coiled-coil domains 4 LOC100359473 /// Tmco4 100359473 /// 500573 NM_001034949 /// XM_002729588 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1391819_at BM390584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390584 /DB_XREF=gi:18190637 /DB_XREF=UI-R-CN1-cjr-k-23-0-UI.s1 /CLONE=UI-R-CN1-cjr-k-23-0-UI /FEA=EST /CNT=3 /TID=Rn.9012.1 /TIER=ConsEnd /STK=2 /UG=Rn.9012 /UG_TITLE=ESTs BM390584 similar to hypothetical protein ET RGD1307394 360667 NM_001108308 1391820_at BE103427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103427 /DB_XREF=gi:8495526 /DB_XREF=UI-R-BX0-arb-h-09-0-UI.s1 /CLONE=UI-R-BX0-arb-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.35373.1 /TIER=ConsEnd /STK=2 /UG=Rn.35373 /UG_TITLE=ESTs, Weakly similar to T08709 hypothetical protein DKFZp564D166.1 (H.sapiens) BE103427 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 Tanc2 303599 NM_001191653 /// XM_001081577 /// XM_221028 0005488 // binding // inferred from electronic annotation 1391821_at BF391706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391706 /DB_XREF=gi:11376560 /DB_XREF=UI-R-CA1-bct-e-05-0-UI.s1 /CLONE=UI-R-CA1-bct-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.53230.1 /TIER=ConsEnd /STK=2 /UG=Rn.53230 /UG_TITLE=ESTs BF391706 1391822_at AW253356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253356 /DB_XREF=gi:6596947 /DB_XREF=UI-R-BJ0-adz-h-12-0-UI.s1 /CLONE=UI-R-BJ0-adz-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.41484.1 /TIER=ConsEnd /STK=2 /UG=Rn.41484 /UG_TITLE=ESTs AW253356 1391823_at AA956842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956842 /DB_XREF=gi:4239316 /DB_XREF=UI-R-E1-fo-a-04-0-UI.s1 /CLONE=UI-R-E1-fo-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.48473.1 /TIER=ConsEnd /STK=2 /UG=Rn.48473 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) AA956842 1391824_at AW532835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532835 /DB_XREF=gi:7175249 /DB_XREF=UI-R-BU0-ams-g-05-0-UI.s1 /CLONE=UI-R-BU0-ams-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.44963.1 /TIER=ConsEnd /STK=2 /UG=Rn.44963 /UG_TITLE=ESTs AW532835 1391825_at BE120422 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120422 /DB_XREF=gi:8512527 /DB_XREF=UI-R-CA0-bam-c-05-0-UI.s1 /CLONE=UI-R-CA0-bam-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.53560.1 /TIER=ConsEnd /STK=2 /UG=Rn.53560 /UG_TITLE=ESTs BE120422 1391826_at AA946371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946371 /DB_XREF=gi:3106287 /DB_XREF=EST201870 /CLONE=RLUBH32 /FEA=EST /CNT=3 /TID=Rn.48267.1 /TIER=ConsEnd /STK=2 /UG=Rn.48267 /UG_TITLE=ESTs AA946371 tumor protein p53 inducible nuclear protein 1 Tp53inp1 297822 NM_181084 0006915 // apoptosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0006950 // response to stress // not recorded /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 1391827_at AI013675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013675 /DB_XREF=gi:4133902 /DB_XREF=EST208350 /CLONE=RSPBR50 /FEA=EST /CNT=3 /TID=Rn.54018.1 /TIER=ConsEnd /STK=2 /UG=Rn.54018 /UG_TITLE=ESTs, Highly similar to T46270 hypothetical protein DKFZp564N1563.1 (H.sapiens) AI013675 filamin, beta Flnb 306204 NM_001107288 0007519 // skeletal muscle tissue development // not recorded 0001725 // stress fiber // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0005925 // focal adhesion // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391828_at AI030836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030836 /DB_XREF=gi:3248662 /DB_XREF=UI-R-C0-je-g-05-0-UI.s1 /CLONE=UI-R-C0-je-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.18608.1 /TIER=ConsEnd /STK=2 /UG=Rn.18608 /UG_TITLE=ESTs AI030836 1391829_at AI105382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105382 /DB_XREF=gi:3709473 /DB_XREF=EST214671 /CLONE=RKIBJ57 /FEA=EST /CNT=3 /TID=Rn.28335.1 /TIER=ConsEnd /STK=2 /UG=Rn.28335 /UG_TITLE=ESTs AI105382 1391830_at AI059204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059204 /DB_XREF=gi:3332981 /DB_XREF=UI-R-C1-lb-d-07-0-UI.s1 /CLONE=UI-R-C1-lb-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.21051.1 /TIER=ConsEnd /STK=2 /UG=Rn.21051 /UG_TITLE=ESTs, Weakly similar to CNE6_MOUSE COPINE VI (NEURONAL-COPINE) (N-COPINE) (M.musculus) AI059204 copine VIII Cpne8 362988 NM_001108750 1391831_at BI276470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276470 /DB_XREF=gi:14921403 /DB_XREF=UI-R-CX0-bwq-g-02-0-UI.s1 /CLONE=UI-R-CX0-bwq-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.42012.1 /TIER=ConsEnd /STK=2 /UG=Rn.42012 /UG_TITLE=ESTs BI276470 1391832_at AI709522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709522 /DB_XREF=gi:4999298 /DB_XREF=UI-R-C3-tn-c-06-0-UI.s1 /CLONE=UI-R-C3-tn-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.48954.1 /TIER=ConsEnd /STK=2 /UG=Rn.48954 /UG_TITLE=ESTs AI709522 1391833_at AW919289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919289 /DB_XREF=gi:8085082 /DB_XREF=EST350593 /CLONE=RGIFP27 /FEA=EST /CNT=3 /TID=Rn.49262.1 /TIER=ConsEnd /STK=2 /UG=Rn.49262 /UG_TITLE=ESTs AW919289 cartilage acidic protein 1 Crtac1 171438 NM_134401 0005509 // calcium ion binding // inferred from electronic annotation 1391834_at BM386419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386419 /DB_XREF=gi:18186472 /DB_XREF=UI-R-CN1-cjf-n-10-0-UI.s1 /CLONE=UI-R-CN1-cjf-n-10-0-UI /FEA=EST /CNT=3 /TID=Rn.65511.2 /TIER=ConsEnd /STK=2 /UG=Rn.65511 /UG_TITLE=ESTs BM386419 Chromatin modifying protein 4C Chmp4c 361916 NM_001017466 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391835_at AW531843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531843 /DB_XREF=gi:7174257 /DB_XREF=UI-R-C4-akz-h-02-0-UI.s1 /CLONE=UI-R-C4-akz-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.47440.1 /TIER=ConsEnd /STK=2 /UG=Rn.47440 /UG_TITLE=ESTs AW531843 bromodomain adjacent to zinc finger domain, 1A Baz1a 314126 NM_001170568 /// XM_001079067 /// XM_234156 0000228 // nuclear chromosome // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1391836_at AI044849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044849 /DB_XREF=gi:3291668 /DB_XREF=UI-R-C1-kd-a-10-0-UI.s1 /CLONE=UI-R-C1-kd-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.16034.1 /TIER=ConsEnd /STK=2 /UG=Rn.16034 /UG_TITLE=ESTs AI044849 1391837_at AA955351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955351 /DB_XREF=gi:4237707 /DB_XREF=UI-R-A1-ey-b-02-0-UI.s1 /CLONE=UI-R-A1-ey-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.8753.1 /TIER=ConsEnd /STK=2 /UG=Rn.8753 /UG_TITLE=ESTs AA955351 similar to chr2 synaptotagmin RGD1565705 299488 XM_002726849 /// XM_002729743 1391838_at BE106639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106639 /DB_XREF=gi:8498741 /DB_XREF=UI-R-BO1-asq-d-04-0-UI.s1 /CLONE=UI-R-BO1-asq-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.68945.1 /TIER=ConsEnd /STK=2 /UG=Rn.68945 /UG_TITLE=ESTs BE106639 1391839_at AA891521 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891521 /DB_XREF=gi:4132064 /DB_XREF=EST195324 /CLONE=RHEAZ48 /FEA=EST /CNT=3 /TID=Rn.7299.1 /TIER=ConsEnd /STK=2 /UG=Rn.7299 /UG_TITLE=ESTs AA891521 1391840_at BE108137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108137 /DB_XREF=gi:8500242 /DB_XREF=UI-R-CA0-axa-g-12-0-UI.s1 /CLONE=UI-R-CA0-axa-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.64819.1 /TIER=ConsEnd /STK=2 /UG=Rn.64819 /UG_TITLE=ESTs BE108137 radial spoke head 9 homolog (Chlamydomonas) Rsph9 316238 NM_001108205 0003341 // cilium movement // not recorded /// 0035083 // cilium axoneme assembly // not recorded 1391841_at BE103537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103537 /DB_XREF=gi:8495637 /DB_XREF=UI-R-BX0-ard-c-12-0-UI.s1 /CLONE=UI-R-BX0-ard-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.43275.1 /TIER=ConsEnd /STK=2 /UG=Rn.43275 /UG_TITLE=ESTs BE103537 1391842_at AI136544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136544 /DB_XREF=gi:3637321 /DB_XREF=UI-R-C2p-nw-a-03-0-UI.s1 /CLONE=UI-R-C2p-nw-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.63983.1 /TIER=ConsEnd /STK=2 /UG=Rn.63983 /UG_TITLE=ESTs AI136544 1391843_at BF393134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393134 /DB_XREF=gi:11377994 /DB_XREF=UI-R-CA0-bfp-b-07-0-UI.s1 /CLONE=UI-R-CA0-bfp-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.60912.1 /TIER=ConsEnd /STK=2 /UG=Rn.60912 /UG_TITLE=ESTs BF393134 1391844_at AI599180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599180 /DB_XREF=gi:4608228 /DB_XREF=EST250883 /CLONE=REMET57 /FEA=EST /CNT=3 /TID=Rn.22253.1 /TIER=ConsEnd /STK=2 /UG=Rn.22253 /UG_TITLE=ESTs AI599180 Tweety homolog 3 (Drosophila) Ttyh3 304315 NM_001107124 0005886 // plasma membrane // not recorded 0005254 // chloride channel activity // not recorded 1391845_at BE106823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106823 /DB_XREF=gi:8498925 /DB_XREF=UI-R-BT1-ast-e-12-0-UI.s1 /CLONE=UI-R-BT1-ast-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.51055.1 /TIER=ConsEnd /STK=2 /UG=Rn.51055 /UG_TITLE=ESTs BE106823 pleckstrin homology domain containing, family H (with MyTH4 domain) member 2 Plekhh2 313866 NM_001191770 /// XM_002726670 /// XM_233830 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1391846_at AI137686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137686 /DB_XREF=gi:3638463 /DB_XREF=UI-R-C0-hs-g-09-0-UI.s1 /CLONE=UI-R-C0-hs-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.27485.1 /TIER=ConsEnd /STK=2 /UG=Rn.27485 /UG_TITLE=ESTs, Weakly similar to S68418 protein phosphatase 1M chain M110 isoform - rat (R.norvegicus) AI137686 protein phosphatase 1, regulatory (inhibitor) subunit 16A Ppp1r16a 362944 NM_001130566 0005515 // protein binding // not recorded 1391847_at AI385341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385341 /DB_XREF=gi:4198123 /DB_XREF=UI-R-C2-mw-h-10-0-UI.s2 /CLONE=UI-R-C2-mw-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.21969.1 /TIER=ConsEnd /STK=2 /UG=Rn.21969 /UG_TITLE=ESTs AI385341 1391848_at BG376780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376780 /DB_XREF=gi:13301252 /DB_XREF=UI-R-CU0-buv-h-08-0-UI.s1 /CLONE=UI-R-CU0-buv-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.66414.1 /TIER=ConsEnd /STK=2 /UG=Rn.66414 /UG_TITLE=ESTs, Weakly similar to T15340 hypothetical protein B0336.3 - Caenorhabditis elegans (C.elegans) BG376780 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1391849_at BF547270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547270 /DB_XREF=gi:11638377 /DB_XREF=UI-R-C2p-qn-b-08-0-UI.r1 /CLONE=UI-R-C2p-qn-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.38367.1 /TIER=ConsEnd /STK=2 /UG=Rn.38367 /UG_TITLE=ESTs BF547270 MBD2-interacting zinc finger Mizf 300665 XM_002727050 /// XM_002729915 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1391850_at BE116159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116159 /DB_XREF=gi:8508264 /DB_XREF=UI-R-BS1-aya-b-03-0-UI.s1 /CLONE=UI-R-BS1-aya-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.52632.1 /TIER=ConsEnd /STK=2 /UG=Rn.52632 /UG_TITLE=ESTs BE116159 1391851_at AI548705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548705 /DB_XREF=gi:4466193 /DB_XREF=UI-R-C3-tw-c-05-0-UI.s1 /CLONE=UI-R-C3-tw-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.37134.1 /TIER=ConsEnd /STK=2 /UG=Rn.37134 /UG_TITLE=ESTs AI548705 1391852_at BF549454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549454 /DB_XREF=gi:11659226 /DB_XREF=UI-R-C2-mt-c-10-0-UI.r1 /CLONE=UI-R-C2-mt-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.20433.1 /TIER=ConsEnd /STK=2 /UG=Rn.20433 /UG_TITLE=ESTs BF549454 1391853_at AA998997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998997 /DB_XREF=gi:4293312 /DB_XREF=UI-R-C0-ih-b-12-0-UI.s1 /CLONE=UI-R-C0-ih-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.23213.1 /TIER=ConsEnd /STK=2 /UG=Rn.23213 /UG_TITLE=ESTs AA998997 1391854_at BF409017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409017 /DB_XREF=gi:11396992 /DB_XREF=UI-R-BT1-bkl-a-09-0-UI.s1 /CLONE=UI-R-BT1-bkl-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.37894.1 /TIER=ConsEnd /STK=2 /UG=Rn.37894 /UG_TITLE=ESTs BF409017 1391855_at AW534002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534002 /DB_XREF=gi:7176416 /DB_XREF=UI-R-C4-alr-g-06-0-UI.s1 /CLONE=UI-R-C4-alr-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.44912.1 /TIER=ConsEnd /STK=2 /UG=Rn.44912 /UG_TITLE=ESTs AW534002 Similar to B-cell CLL/lymphoma 7A LOC690085 690085 1391856_at BE108859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108859 /DB_XREF=gi:8500964 /DB_XREF=UI-R-BS1-ayz-c-02-0-UI.s1 /CLONE=UI-R-BS1-ayz-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.27333.1 /TIER=ConsEnd /STK=2 /UG=Rn.27333 /UG_TITLE=ESTs BE108859 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G Sema3g 290562 NM_001100882 0007275 // multicellular organismal development // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1391857_at AI044397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044397 /DB_XREF=gi:3291300 /DB_XREF=UI-R-C0-is-e-01-0-UI.s1 /CLONE=UI-R-C0-is-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.15908.1 /TIER=ConsEnd /STK=2 /UG=Rn.15908 /UG_TITLE=ESTs AI044397 mesothelin-like Mslnl 363554 XM_001060231 /// XM_343869 1391858_at BM385930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385930 /DB_XREF=gi:18185983 /DB_XREF=UI-R-DN1-ckf-m-09-0-UI.s1 /CLONE=UI-R-DN1-ckf-m-09-0-UI /FEA=EST /CNT=3 /TID=Rn.66825.1 /TIER=ConsEnd /STK=2 /UG=Rn.66825 /UG_TITLE=ESTs, Moderately similar to B54037 splicing regulatory protein SWAP homolog (H.sapiens) BM385930 splicing factor, arginine/serine-rich 8 Sfrs8 304431 NM_001034924 0006396 // RNA processing // inferred from electronic annotation /// 0007010 // cytoskeleton organization // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction 1391859_at BI291444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291444 /DB_XREF=gi:14950991 /DB_XREF=UI-R-CV2-cgq-d-03-0-UI.s1 /CLONE=UI-R-CV2-cgq-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.79251.1 /TIER=ConsEnd /STK=2 /UG=Rn.79251 /UG_TITLE=ESTs BI291444 1391860_at AI599816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599816 /DB_XREF=gi:4608864 /DB_XREF=EST251519 /CLONE=REMEM35 /FEA=EST /CNT=3 /TID=Rn.6611.2 /TIER=ConsEnd /STK=2 /UG=Rn.6611 /UG_TITLE=ESTs AI599816 1391861_at BI290684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290684 /DB_XREF=gi:14949487 /DB_XREF=UI-R-DK0-cfy-b-10-0-UI.s1 /CLONE=UI-R-DK0-cfy-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.24042.1 /TIER=ConsEnd /STK=2 /UG=Rn.24042 /UG_TITLE=ESTs BI290684 taxilin beta Txlnb 308622 NM_001135859 0005737 // cytoplasm // not recorded 1391862_at BG377635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377635 /DB_XREF=gi:13302107 /DB_XREF=UI-R-CU0-bve-b-06-0-UI.s1 /CLONE=UI-R-CU0-bve-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.66800.1 /TIER=ConsEnd /STK=2 /UG=Rn.66800 /UG_TITLE=ESTs BG377635 1391863_at BE106361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106361 /DB_XREF=gi:8498463 /DB_XREF=UI-R-BT1-asv-a-11-0-UI.s1 /CLONE=UI-R-BT1-asv-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.48944.1 /TIER=ConsEnd /STK=2 /UG=Rn.48944 /UG_TITLE=ESTs BE106361 1391864_at BF282495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282495 /DB_XREF=gi:11213565 /DB_XREF=EST447086 /CLONE=RGIDO08 /FEA=EST /CNT=3 /TID=Rn.8484.1 /TIER=ConsEnd /STK=2 /UG=Rn.8484 /UG_TITLE=ESTs, Weakly similar to A57080 cell surface antigen RB13-6 - rat (R.norvegicus) BF282495 ectonucleotide pyrophosphatase/phosphodiesterase 6 Enpp6 306460 NM_001107311 0008152 // metabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0019695 // choline metabolic process // inferred from electronic annotation /// 0019695 // choline metabolic process // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008889 // glycerophosphodiester phosphodiesterase activity // inferred from electronic annotation /// 0008889 // glycerophosphodiester phosphodiesterase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1391865_at BF282921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282921 /DB_XREF=gi:11213991 /DB_XREF=EST447512 /CLONE=RGIDV02 /FEA=EST /CNT=3 /TID=Rn.28352.1 /TIER=ConsEnd /STK=2 /UG=Rn.28352 /UG_TITLE=ESTs BF282921 ring finger protein 151 Rnf151 302977 NM_001106987 0016567 // protein ubiquitination // inferred from electronic annotation 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391866_at AI014116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI014116 /DB_XREF=gi:4133765 /DB_XREF=EST207671 /CLONE=RSPBF22 /FEA=EST /CNT=3 /TID=Rn.18968.1 /TIER=ConsEnd /STK=2 /UG=Rn.18968 /UG_TITLE=ESTs AI014116 nuclear protein, ataxia-telangiectasia locus Npat 315666 NM_001108147 0000083 // regulation of transcription involved in G1/S phase of mitotic cell cycle // not recorded /// 0010468 // regulation of gene expression // not recorded 0005634 // nucleus // not recorded /// 0015030 // Cajal body // not recorded /// 0044428 // nuclear part // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003713 // transcription coactivator activity // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0047485 // protein N-terminus binding // not recorded 1391867_at BI293159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293159 /DB_XREF=gi:14954389 /DB_XREF=UI-R-DK0-cdk-d-11-0-UI.s1 /CLONE=UI-R-DK0-cdk-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.41331.1 /TIER=ConsEnd /STK=2 /UG=Rn.41331 /UG_TITLE=ESTs BI293159 1391868_at AW521103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521103 /DB_XREF=gi:7163481 /DB_XREF=UI-R-BO0-agp-c-05-0-UI.s1 /CLONE=UI-R-BO0-agp-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.44854.1 /TIER=ConsEnd /STK=2 /UG=Rn.44854 /UG_TITLE=ESTs AW521103 1391869_at AW532427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532427 /DB_XREF=gi:7174841 /DB_XREF=UI-R-BS0-amo-d-04-0-UI.s1 /CLONE=UI-R-BS0-amo-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.54175.1 /TIER=ConsEnd /STK=2 /UG=Rn.54175 /UG_TITLE=ESTs AW532427 similar to dachshund b LOC680770 680770 XM_001058786 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation 1391870_at BF418037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418037 /DB_XREF=gi:11405991 /DB_XREF=UI-R-CA1-blv-c-08-0-UI.s1 /CLONE=UI-R-CA1-blv-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.63320.1 /TIER=ConsEnd /STK=2 /UG=Rn.63320 /UG_TITLE=ESTs BF418037 1391871_at AI763550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763550 /DB_XREF=gi:5209485 /DB_XREF=UI-R-Y0-abf-c-07-0-UI.s1 /CLONE=UI-R-Y0-abf-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.26672.1 /TIER=ConsEnd /STK=2 /UG=Rn.26672 /UG_TITLE=ESTs AI763550 StAR-related lipid transfer (START) domain containing 13 Stard13 498130 NM_001109060 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // not recorded 1391872_at AI011509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011509 /DB_XREF=gi:3225341 /DB_XREF=EST205960 /CLONE=ROVAV90 /FEA=EST /CNT=3 /TID=Rn.49493.1 /TIER=ConsEnd /STK=2 /UG=Rn.49493 /UG_TITLE=ESTs AI011509 similar to protein phosphatase 2C eta isoform 2 LOC686298 686298 XM_001073372 0003824 // catalytic activity // inferred from electronic annotation 1391873_at AI176950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176950 /DB_XREF=gi:3727588 /DB_XREF=EST220556 /CLONE=ROVBZ03 /FEA=EST /CNT=3 /TID=Rn.37683.1 /TIER=ConsEnd /STK=2 /UG=Rn.37683 /UG_TITLE=ESTs AI176950 1391874_at AW528103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528103 /DB_XREF=gi:7170517 /DB_XREF=UI-R-BT1-akh-g-09-0-UI.s1 /CLONE=UI-R-BT1-akh-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.46565.1 /TIER=ConsEnd /STK=2 /UG=Rn.46565 /UG_TITLE=ESTs AW528103 1391875_at AI176106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176106 /DB_XREF=gi:4134856 /DB_XREF=EST219685 /CLONE=ROVBK68 /FEA=EST /CNT=3 /TID=Rn.55645.1 /TIER=ConsEnd /STK=2 /UG=Rn.55645 /UG_TITLE=ESTs AI176106 1391876_at AI170412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170412 /DB_XREF=gi:3710452 /DB_XREF=EST216338 /CLONE=RLUCH94 /FEA=EST /CNT=3 /TID=Rn.28407.1 /TIER=ConsEnd /STK=2 /UG=Rn.28407 /UG_TITLE=ESTs AI170412 heat shock transcription factor 2 Hsf2 64441 NM_031694 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0045449 // regulation of transcription // non-traceable author statement 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1391877_at BF405044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405044 /DB_XREF=gi:11393019 /DB_XREF=UI-R-CA1-bio-h-10-0-UI.s1 /CLONE=UI-R-CA1-bio-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.64138.1 /TIER=ConsEnd /STK=2 /UG=Rn.64138 /UG_TITLE=ESTs BF405044 1391878_at AI234125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234125 /DB_XREF=gi:3818005 /DB_XREF=EST230813 /CLONE=RLUCV49 /FEA=EST /CNT=3 /TID=Rn.24785.1 /TIER=ConsEnd /STK=2 /UG=Rn.24785 /UG_TITLE=ESTs, Highly similar to TVMSM3 transforming protein myb (M.musculus) AI234125 similar to Myb proto-oncogene protein (C-myb) (predicted) RGD1560020_predicted 498982 XR_085687 /// XR_086102 1391879_at AA964161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964161 /DB_XREF=gi:4279037 /DB_XREF=UI-R-E1-gl-h-01-0-UI.s1 /CLONE=UI-R-E1-gl-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.11721.1 /TIER=ConsEnd /STK=2 /UG=Rn.11721 /UG_TITLE=ESTs AA964161 1391880_at AA893670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893670 /DB_XREF=gi:3020549 /DB_XREF=EST197473 /CLONE=RPLAI26 /FEA=EST /CNT=3 /TID=Rn.22753.1 /TIER=ConsEnd /STK=2 /UG=Rn.22753 /UG_TITLE=ESTs AA893670 1391881_at AI716506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716506 /DB_XREF=gi:5033759 /DB_XREF=UI-R-Y0-ach-h-06-0-UI.s1 /CLONE=UI-R-Y0-ach-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.40755.1 /TIER=ConsEnd /STK=2 /UG=Rn.40755 /UG_TITLE=ESTs AI716506 1391882_at BF408103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408103 /DB_XREF=gi:11396078 /DB_XREF=UI-R-BJ2-bqz-g-05-0-UI.s1 /CLONE=UI-R-BJ2-bqz-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.64327.1 /TIER=ConsEnd /STK=2 /UG=Rn.64327 /UG_TITLE=ESTs BF408103 1391883_at BI295062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295062 /DB_XREF=gi:14958130 /DB_XREF=UI-R-DK0-cef-d-05-0-UI.s1 /CLONE=UI-R-DK0-cef-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.69429.1 /TIER=ConsEnd /STK=2 /UG=Rn.69429 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BI295062 WW domain-containing oxidoreductase Wwox 292041 NM_001106188 0001649 // osteoblast differentiation // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0048705 // skeletal system morphogenesis // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005794 // Golgi apparatus // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1391884_at BF416651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416651 /DB_XREF=gi:11404640 /DB_XREF=UI-R-CA0-bku-b-12-0-UI.s1 /CLONE=UI-R-CA0-bku-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.53943.1 /TIER=ConsEnd /STK=2 /UG=Rn.53943 /UG_TITLE=ESTs, Weakly similar to SERINE PROTEASE HEPSIN (R.norvegicus) BF416651 coagulation factor XII (Hageman factor) F12 306761 NM_001014006 0002353 // plasma kallikrein-kinin cascade // not recorded /// 0002542 // Factor XII activation // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from direct assay /// 0007596 // blood coagulation // inferred from electronic annotation /// 0007596 // blood coagulation // not recorded /// 0008152 // metabolic process // not recorded /// 0010756 // positive regulation of plasminogen activation // not recorded /// 0016540 // protein autoprocessing // not recorded /// 0030193 // regulation of blood coagulation // not recorded /// 0030194 // positive regulation of blood coagulation // not recorded /// 0031638 // zymogen activation // not recorded /// 0042730 // fibrinolysis // inferred from electronic annotation /// 0051605 // protein maturation by peptide bond cleavage // not recorded /// 0051788 // response to misfolded protein // not recorded /// 0051919 // positive regulation of fibrinolysis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from direct assay /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // not recorded /// 0005488 // binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0070009 // serine-type aminopeptidase activity // inferred from direct assay 1391885_at AA925352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925352 /DB_XREF=gi:4236543 /DB_XREF=UI-R-A1-ee-b-09-0-UI.s1 /CLONE=UI-R-A1-ee-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.9217.1 /TIER=ConsEnd /STK=2 /UG=Rn.9217 /UG_TITLE=ESTs AA925352 1391886_at AW527166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527166 /DB_XREF=gi:7169580 /DB_XREF=UI-R-BO1-ajm-c-07-0-UI.s1 /CLONE=UI-R-BO1-ajm-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.46441.1 /TIER=ConsEnd /STK=2 /UG=Rn.46441 /UG_TITLE=ESTs AW527166 rCG54858-like LOC100359704 100359704 XM_002729474 1391887_at BG372263 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372263 /DB_XREF=gi:13268800 /DB_XREF=UI-R-CV0-bro-e-02-0-UI.s1 /CLONE=UI-R-CV0-bro-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.66901.1 /TIER=ConsEnd /STK=2 /UG=Rn.66901 /UG_TITLE=ESTs BG372263 immunoglobulin superfamily, member 9 Igsf9 304982 NM_001107197 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0016358 // dendrite development // inferred from electronic annotation /// 0016358 // dendrite development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0045202 // synapse // inferred from electronic annotation 1391888_at AW253867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253867 /DB_XREF=gi:6597458 /DB_XREF=UI-R-BJ0-aec-c-11-0-UI.s1 /CLONE=UI-R-BJ0-aec-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.40345.1 /TIER=ConsEnd /STK=2 /UG=Rn.40345 /UG_TITLE=ESTs AW253867 adenosine deaminase, RNA-specific, B1 Adarb1 25367 NM_001111055 /// NM_001111056 /// NM_001111057 /// NM_012894 0006396 // RNA processing // inferred from electronic annotation /// 0006396 // RNA processing // not recorded /// 0006396 // RNA processing // inferred from sequence or structural similarity /// 0006397 // mRNA processing // inferred from electronic annotation /// 0016556 // mRNA modification // inferred from direct assay /// 0016556 // mRNA modification // non-traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from mutant phenotype /// 0005730 // nucleolus // inferred from mutant phenotype 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // not recorded /// 0003725 // double-stranded RNA binding // inferred from sequence or structural similarity /// 0003726 // double-stranded RNA adenosine deaminase activity // inferred from direct assay /// 0003726 // double-stranded RNA adenosine deaminase activity // not recorded /// 0003726 // double-stranded RNA adenosine deaminase activity // inferred from sequence or structural similarity /// 0003726 // double-stranded RNA adenosine deaminase activity // non-traceable author statement /// 0003726 // double-stranded RNA adenosine deaminase activity // inferred from electronic annotation /// 0004000 // adenosine deaminase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391889_at BG671963 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671963 /DB_XREF=gi:13894062 /DB_XREF=DRNCAB09 /CLONE=DRNCAB09 /FEA=EST /CNT=3 /TID=Rn.27462.1 /TIER=ConsEnd /STK=2 /UG=Rn.27462 /UG_TITLE=ESTs BG671963 1391890_at AI548031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548031 /DB_XREF=gi:4465519 /DB_XREF=UI-R-C3-tc-f-06-0-UI.s1 /CLONE=UI-R-C3-tc-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.44744.1 /TIER=ConsEnd /STK=2 /UG=Rn.44744 /UG_TITLE=ESTs AI548031 breast carcinoma amplified sequence 3 Bcas3 363662 NM_001173430 /// XM_001081081 /// XM_343952 1391891_at AI711114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711114 /DB_XREF=gi:5000890 /DB_XREF=UI-R-AD1-zo-c-09-0-UI.s1 /CLONE=UI-R-AD1-zo-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.41523.2 /TIER=ConsEnd /STK=2 /UG=Rn.41523 /UG_TITLE=ESTs AI711114 ATP/GTP binding protein 1 Agtpbp1 290986 NM_001106100 0006508 // proteolysis // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0021702 // cerebellar Purkinje cell differentiation // inferred from electronic annotation /// 0021702 // cerebellar Purkinje cell differentiation // not recorded /// 0042133 // neurotransmitter metabolic process // inferred from electronic annotation /// 0042133 // neurotransmitter metabolic process // not recorded /// 0050905 // neuromuscular process // inferred from electronic annotation /// 0050905 // neuromuscular process // not recorded 0000221 // vacuolar proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 1391892_at BE098817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098817 /DB_XREF=gi:8490686 /DB_XREF=UI-R-BJ1-ate-b-12-0-UI.s1 /CLONE=UI-R-BJ1-ate-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.49825.1 /TIER=ConsEnd /STK=2 /UG=Rn.49825 /UG_TITLE=ESTs BE098817 1391893_at AI501557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501557 /DB_XREF=gi:4399408 /DB_XREF=UI-R-C2p-sc-e-08-0-UI.s1 /CLONE=UI-R-C2p-sc-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.35517.1 /TIER=ConsEnd /STK=2 /UG=Rn.35517 /UG_TITLE=ESTs, Weakly similar to T22973 hypothetical protein F59A2.4 - Caenorhabditis elegans (C.elegans) AI501557 CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae) Clp1 311166 NM_001009599 0006388 // tRNA splicing, via endonucleolytic cleavage and ligation // not recorded /// 0006388 // tRNA splicing, via endonucleolytic cleavage and ligation // inferred from sequence or structural similarity /// 0006388 // tRNA splicing, via endonucleolytic cleavage and ligation // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0030423 // targeting of mRNA for destruction involved in RNA interference // not recorded /// 0030423 // targeting of mRNA for destruction involved in RNA interference // inferred from sequence or structural similarity /// 0030423 // targeting of mRNA for destruction involved in RNA interference // inferred from electronic annotation /// 0035087 // siRNA loading onto RISC involved in RNA interference // not recorded /// 0035087 // siRNA loading onto RISC involved in RNA interference // inferred from sequence or structural similarity /// 0035087 // siRNA loading onto RISC involved in RNA interference // inferred from electronic annotation 0000214 // tRNA-intron endonuclease complex // not recorded /// 0000214 // tRNA-intron endonuclease complex // inferred from sequence or structural similarity /// 0000214 // tRNA-intron endonuclease complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046404 // ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity // inferred from electronic annotation /// 0051733 // polydeoxyribonucleotide kinase activity // not recorded /// 0051733 // polydeoxyribonucleotide kinase activity // inferred from sequence or structural similarity /// 0051733 // polydeoxyribonucleotide kinase activity // inferred from electronic annotation /// 0051736 // ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity // not recorded /// 0051736 // ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity // inferred from sequence or structural similarity /// 0051736 // ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity // inferred from electronic annotation 1391894_at BE118274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118274 /DB_XREF=gi:8510379 /DB_XREF=UI-R-BJ1-azo-g-03-0-UI.s1 /CLONE=UI-R-BJ1-azo-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.52978.1 /TIER=ConsEnd /STK=2 /UG=Rn.52978 /UG_TITLE=ESTs BE118274 1391895_at BE109921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109921 /DB_XREF=gi:8502026 /DB_XREF=UI-R-CA0-axi-h-08-0-UI.s1 /CLONE=UI-R-CA0-axi-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.18870.1 /TIER=ConsEnd /STK=2 /UG=Rn.18870 /UG_TITLE=ESTs BE109921 1391896_at BF419600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419600 /DB_XREF=gi:11407589 /DB_XREF=UI-R-CA0-bpe-a-08-0-UI.s1 /CLONE=UI-R-CA0-bpe-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.63578.1 /TIER=ConsEnd /STK=2 /UG=Rn.63578 /UG_TITLE=ESTs, Weakly similar to GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2 (R.norvegicus) BF419600 GRB2-related adaptor protein 2 Grap2 366962 NM_001034944 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391897_at BG379295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379295 /DB_XREF=gi:13303767 /DB_XREF=UI-R-CS0-btu-a-07-0-UI.s1 /CLONE=UI-R-CS0-btu-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.18147.1 /TIER=ConsEnd /STK=2 /UG=Rn.18147 /UG_TITLE=ESTs, Weakly similar to T29104 Tbc1 protein - mouse (M.musculus) BG379295 RAB GTPase activating protein 1-like Rabgap1l 304914 NM_001107190 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// 0032880 // regulation of protein localization // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005769 // early endosome // not recorded /// 0005794 // Golgi apparatus // not recorded 0005097 // Rab GTPase activator activity // not recorded /// 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1391898_at AW524135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524135 /DB_XREF=gi:7166520 /DB_XREF=UI-R-BO0-ahr-h-08-0-UI.s1 /CLONE=UI-R-BO0-ahr-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.41955.1 /TIER=ConsEnd /STK=2 /UG=Rn.41955 /UG_TITLE=ESTs AW524135 1391899_at BI303858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303858 /DB_XREF=gi:14980138 /DB_XREF=UI-R-DS0-cjd-m-04-0-UI.s1 /CLONE=UI-R-DS0-cjd-m-04-0-UI /FEA=EST /CNT=3 /TID=Rn.9298.1 /TIER=ConsEnd /STK=2 /UG=Rn.9298 /UG_TITLE=ESTs BI303858 1391900_at AW534091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534091 /DB_XREF=gi:7176505 /DB_XREF=UI-R-C4-alp-a-10-0-UI.s1 /CLONE=UI-R-C4-alp-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.48255.1 /TIER=ConsEnd /STK=2 /UG=Rn.48255 /UG_TITLE=ESTs AW534091 1391901_at AA956085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956085 /DB_XREF=gi:4238479 /DB_XREF=UI-R-E1-fh-c-06-0-UI.s1 /CLONE=UI-R-E1-fh-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.9549.1 /TIER=ConsEnd /STK=2 /UG=Rn.9549 /UG_TITLE=ESTs AA956085 1391902_at AW527377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527377 /DB_XREF=gi:7169791 /DB_XREF=UI-R-BO1-ajj-f-06-0-UI.s1 /CLONE=UI-R-BO1-ajj-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.46368.1 /TIER=ConsEnd /STK=2 /UG=Rn.46368 /UG_TITLE=ESTs AW527377 1391903_at BF408516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408516 /DB_XREF=gi:11396491 /DB_XREF=UI-R-BJ2-bre-f-11-0-UI.s1 /CLONE=UI-R-BJ2-bre-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.55975.1 /TIER=ConsEnd /STK=2 /UG=Rn.55975 /UG_TITLE=ESTs BF408516 1391904_at BE120522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120522 /DB_XREF=gi:8512627 /DB_XREF=UI-R-CA0-bat-e-01-0-UI.s1 /CLONE=UI-R-CA0-bat-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.64391.1 /TIER=ConsEnd /STK=2 /UG=Rn.64391 /UG_TITLE=ESTs BE120522 1391905_at BE108910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108910 /DB_XREF=gi:8501015 /DB_XREF=UI-R-BS1-ayz-g-10-0-UI.s1 /CLONE=UI-R-BS1-ayz-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.65423.1 /TIER=ConsEnd /STK=2 /UG=Rn.65423 /UG_TITLE=ESTs, Weakly similar to PWP2_HUMAN PERIODIC TRYPTOPHAN PROTEIN 2 HOMOLOG (H.sapiens) BE108910 PWP2 periodic tryptophan protein homolog (yeast) Pwp2 690297 NM_001168653 1391906_at BE113001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113001 /DB_XREF=gi:8505106 /DB_XREF=UI-R-BJ1-awf-c-06-0-UI.s1 /CLONE=UI-R-BJ1-awf-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.46070.1 /TIER=ConsEnd /STK=2 /UG=Rn.46070 /UG_TITLE=ESTs, Highly similar to KF1B_MOUSE KINESIN-LIKE PROTEIN KIF1B (M.musculus) BE113001 kinesin family member 1B /// phosphogluconate dehydrogenase Kif1b /// Pgd 117548 /// 362660 NM_057200 0005975 // carbohydrate metabolic process // inferred from direct assay /// 0006098 // pentose-phosphate shunt // inferred from direct assay /// 0006098 // pentose-phosphate shunt // inferred from sequence or structural similarity /// 0006200 // ATP catabolic process // not recorded /// 0006739 // NADP metabolic process // inferred from direct assay /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007018 // microtubule-based movement // not recorded /// 0007018 // microtubule-based movement // inferred from sequence or structural similarity /// 0007270 // nerve-nerve synaptic transmission // not recorded /// 0007270 // nerve-nerve synaptic transmission // inferred from sequence or structural similarity /// 0007270 // nerve-nerve synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0007274 // neuromuscular synaptic transmission // inferred from sequence or structural similarity /// 0007274 // neuromuscular synaptic transmission // inferred from electronic annotation /// 0008089 // anterograde axon cargo transport // not recorded /// 0008089 // anterograde axon cargo transport // inferred from sequence or structural similarity /// 0008089 // anterograde axon cargo transport // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0009051 // pentose-phosphate shunt, oxidative branch // inferred from mutant phenotype /// 0009051 // pentose-phosphate shunt, oxidative branch // not recorded /// 0019322 // pentose biosynthetic process // not recorded /// 0019521 // D-gluconate metabolic process // inferred from direct assay /// 0030705 // cytoskeleton-dependent intracellular transport // not recorded /// 0030705 // cytoskeleton-dependent intracellular transport // inferred from sequence or structural similarity /// 0030705 // cytoskeleton-dependent intracellular transport // inferred from electronic annotation /// 0047497 // mitochondrion transport along microtubule // inferred from electronic annotation /// 0047497 // mitochondrion transport along microtubule // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // not recorded /// 0005875 // microtubule associated complex // inferred from sequence or structural similarity /// 0005875 // microtubule associated complex // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // not recorded /// 0030659 // cytoplasmic vesicle membrane // inferred from sequence or structural similarity /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // not recorded /// 0003777 // microtubule motor activity // inferred from sequence or structural similarity /// 0004616 // phosphogluconate dehydrogenase (decarboxylating) activity // inferred from direct assay /// 0004616 // phosphogluconate dehydrogenase (decarboxylating) activity // not recorded /// 0004616 // phosphogluconate dehydrogenase (decarboxylating) activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from direct assay /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0016887 // ATPase activity // inferred from sequence or structural similarity /// 0016887 // ATPase activity // inferred from electronic annotation /// 0031406 // carboxylic acid binding // inferred from direct assay /// 0050661 // NADP or NADPH binding // inferred from direct assay 1391907_at AI030790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030790 /DB_XREF=gi:3248616 /DB_XREF=UI-R-C0-jo-f-05-0-UI.s1 /CLONE=UI-R-C0-jo-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.23912.1 /TIER=ConsEnd /STK=2 /UG=Rn.23912 /UG_TITLE=ESTs AI030790 N-acetylglutamate synthase Nags 303563 NM_001107053 0006526 // arginine biosynthetic process // inferred from electronic annotation /// 0006536 // glutamate metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0003991 // acetylglutamate kinase activity // inferred from electronic annotation /// 0004042 // acetyl-CoA:L-glutamate N-acetyltransferase activity // not recorded /// 0004042 // acetyl-CoA:L-glutamate N-acetyltransferase activity // non-traceable author statement /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1391908_at AW919097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919097 /DB_XREF=gi:8084887 /DB_XREF=EST350401 /CLONE=RGIFC70 /FEA=EST /CNT=3 /TID=Rn.23268.2 /TIER=ConsEnd /STK=2 /UG=Rn.23268 /UG_TITLE=ESTs AW919097 Ubiquitin interaction motif containing 1 Uimc1 290997 NM_001013884 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // not recorded /// 0006302 // double-strand break repair // inferred from sequence or structural similarity /// 0006350 // transcription // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010212 // response to ionizing radiation // not recorded /// 0010212 // response to ionizing radiation // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0031572 // G2/M transition DNA damage checkpoint // not recorded /// 0031572 // G2/M transition DNA damage checkpoint // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045739 // positive regulation of DNA repair // not recorded /// 0045739 // positive regulation of DNA repair // inferred from sequence or structural similarity /// 0070537 // histone H2A K63-linked deubiquitination // not recorded /// 0070537 // histone H2A K63-linked deubiquitination // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0070531 // BRCA1-A complex // not recorded /// 0070531 // BRCA1-A complex // inferred from sequence or structural similarity 0005515 // protein binding // not recorded /// 0042393 // histone binding // not recorded /// 0042393 // histone binding // inferred from sequence or structural similarity /// 0046965 // retinoid X receptor binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // not recorded /// 0070530 // K63-linked polyubiquitin binding // not recorded /// 0070530 // K63-linked polyubiquitin binding // inferred from sequence or structural similarity 1391909_at AI072611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072611 /DB_XREF=gi:3398805 /DB_XREF=UI-R-C2-nn-d-12-0-UI.s1 /CLONE=UI-R-C2-nn-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.52065.1 /TIER=ConsEnd /STK=2 /UG=Rn.52065 /UG_TITLE=ESTs AI072611 ubiquilin 2 Ubqln2 317396 NM_001108251 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded 0005488 // binding // inferred from electronic annotation 1391910_at BF550405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550405 /DB_XREF=gi:11660135 /DB_XREF=UI-R-A1-eg-d-01-0-UI.r1 /CLONE=UI-R-A1-eg-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.23940.1 /TIER=ConsEnd /STK=2 /UG=Rn.23940 /UG_TITLE=ESTs, Moderately similar to Y084_HUMAN HYPOTHETICAL PROTEIN KIAA0084 (H.sapiens) BF550405 Raftlin lipid raft linker 1 Rftn1 501095 NM_001135011 1391911_at AW524678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524678 /DB_XREF=gi:7167063 /DB_XREF=UI-R-BO0-aib-b-06-0-UI.s1 /CLONE=UI-R-BO0-aib-b-06-0-UI /FEA=EST /CNT=4 /TID=Rn.45896.1 /TIER=ConsEnd /STK=2 /UG=Rn.45896 /UG_TITLE=ESTs AW524678 1391912_at AI599382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599382 /DB_XREF=gi:4608430 /DB_XREF=EST251085 /CLONE=REMEO43 /FEA=EST /CNT=3 /TID=Rn.20766.1 /TIER=ConsEnd /STK=2 /UG=Rn.20766 /UG_TITLE=ESTs AI599382 1391913_at AI407496 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407496 /DB_XREF=gi:4251000 /DB_XREF=EST235785 /CLONE=ROVDT95 /FEA=EST /CNT=3 /TID=Rn.43487.1 /TIER=ConsEnd /STK=2 /UG=Rn.43487 /UG_TITLE=ESTs AI407496 1391914_at BG371658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371658 /DB_XREF=gi:13268195 /DB_XREF=UI-R-BJ2-bor-f-04-0-UI.s1 /CLONE=UI-R-BJ2-bor-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.66857.1 /TIER=ConsEnd /STK=2 /UG=Rn.66857 /UG_TITLE=ESTs, Weakly similar to WNT4_RAT WNT-4 PROTEIN PRECURSOR (R.norvegicus) BG371658 Wingless-type MMTV integration site family, member 6 Wnt6 316526 NM_001108226 0007223 // Wnt receptor signaling pathway, calcium modulating pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009798 // axis specification // not recorded /// 0010628 // positive regulation of gene expression // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0035148 // tube formation // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0048754 // branching morphogenesis of a tube // not recorded /// 0060684 // epithelial-mesenchymal cell signaling // not recorded /// 0070172 // positive regulation of tooth mineralization // not recorded /// 0072080 // nephron tubule development // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0031012 // extracellular matrix // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391915_at BE120145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120145 /DB_XREF=gi:8512250 /DB_XREF=UI-R-CA0-bap-b-03-0-UI.s1 /CLONE=UI-R-CA0-bap-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.53875.1 /TIER=ConsEnd /STK=2 /UG=Rn.53875 /UG_TITLE=ESTs, Moderately similar to GR75 RAT MITOCHONDRIAL STRESS-70 PROTEIN PRECURSOR (R.norvegicus) BE120145 heat shock protein 9 Hspa9 291671 NM_001100658 0006457 // protein folding // inferred from electronic annotation /// 0006611 // protein export from nucleus // inferred from electronic annotation /// 0006611 // protein export from nucleus // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0051082 // unfolded protein binding // inferred from electronic annotation 1391916_at BE116043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116043 /DB_XREF=gi:8508148 /DB_XREF=UI-R-BS1-axy-g-12-0-UI.s1 /CLONE=UI-R-BS1-axy-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.52607.1 /TIER=ConsEnd /STK=2 /UG=Rn.52607 /UG_TITLE=ESTs BE116043 1391917_at AI010434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010434 /DB_XREF=gi:4133253 /DB_XREF=EST204885 /CLONE=RLUBZ42 /FEA=EST /CNT=3 /TID=Rn.23394.1 /TIER=ConsEnd /STK=2 /UG=Rn.23394 /UG_TITLE=ESTs AI010434 1391918_at AW532287 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532287 /DB_XREF=gi:7174701 /DB_XREF=UI-R-C4-all-f-06-0-UI.s1 /CLONE=UI-R-C4-all-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.47915.1 /TIER=ConsEnd /STK=2 /UG=Rn.47915 /UG_TITLE=ESTs AW532287 1391919_at AW523472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523472 /DB_XREF=gi:7165857 /DB_XREF=UI-R-BO0-aho-e-11-0-UI.s1 /CLONE=UI-R-BO0-aho-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.45649.1 /TIER=ConsEnd /STK=2 /UG=Rn.45649 /UG_TITLE=ESTs AW523472 transcription elongation regulator 1-like Tcerg1l 361669 NM_001130077 0005515 // protein binding // inferred from electronic annotation 1391920_at AA964213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964213 /DB_XREF=gi:4279089 /DB_XREF=UI-R-E1-gl-a-01-0-UI.s1 /CLONE=UI-R-E1-gl-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.11739.1 /TIER=ConsEnd /STK=2 /UG=Rn.11739 /UG_TITLE=ESTs AA964213 similar to C19orf36 protein RGD1564722 362832 XM_001071667 /// XM_002726872 /// XM_002729764 /// XM_343160 1391921_at AW530941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530941 /DB_XREF=gi:7173355 /DB_XREF=UI-R-C4-alf-e-01-0-UI.s1 /CLONE=UI-R-C4-alf-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.47583.1 /TIER=ConsEnd /STK=2 /UG=Rn.47583 /UG_TITLE=ESTs, Highly similar to MCE1 MOUSE MRNA CAPPING ENZYME (M.musculus) AW530941 RNA guanylyltransferase and 5'-phosphatase Rngtt 313131 NM_001107923 0006370 // mRNA capping // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0004484 // mRNA guanylyltransferase activity // inferred from electronic annotation /// 0004651 // polynucleotide 5'-phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1391922_at AI236985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236985 /DB_XREF=gi:3830491 /DB_XREF=EST233547 /CLONE=ROVDN26 /FEA=EST /CNT=3 /TID=Rn.25405.1 /TIER=ConsEnd /STK=2 /UG=Rn.25405 /UG_TITLE=ESTs AI236985 HES/HEY-like transcription factor Helt 498633 XR_085643 /// XR_086046 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001967 // suckling behavior // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0009791 // post-embryonic development // not recorded /// 0010259 // multicellular organismal aging // not recorded /// 0010467 // gene expression // not recorded /// 0021858 // GABAergic neuron differentiation in basal ganglia // not recorded /// 0030182 // neuron differentiation // not recorded /// 0035264 // multicellular organism growth // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1391923_at BG376838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376838 /DB_XREF=gi:13301310 /DB_XREF=UI-R-CA1-blh-g-08-0-UI.s1 /CLONE=UI-R-CA1-blh-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.66160.1 /TIER=ConsEnd /STK=2 /UG=Rn.66160 /UG_TITLE=ESTs BG376838 1391924_at AI170760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170760 /DB_XREF=gi:3710800 /DB_XREF=EST216699 /CLONE=RMUBB16 /FEA=EST /CNT=3 /TID=Rn.54639.2 /TIER=ConsEnd /STK=2 /UG=Rn.54639 /UG_TITLE=ESTs, Weakly similar to T12477 hypothetical protein DKFZp564L0862.1 (H.sapiens) AI170760 1391925_at AA996885 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996885 /DB_XREF=gi:4280649 /DB_XREF=UI-R-C0-hh-c-05-0-UI.s1 /CLONE=UI-R-C0-hh-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.12445.1 /TIER=ConsEnd /STK=2 /UG=Rn.12445 /UG_TITLE=ESTs, Moderately similar to SY19 MOUSE SMALL INDUCIBLE CYTOKINE A19 PRECURSOR (M.musculus) AA996885 chemokine (C-C motif) ligand 19 Ccl19 362506 NM_001108661 0006955 // immune response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annotation 1391926_at BM385008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385008 /DB_XREF=gi:18185061 /DB_XREF=UI-R-CN1-cjm-i-02-0-UI.s2 /CLONE=UI-R-CN1-cjm-i-02-0-UI /FEA=EST /CNT=3 /TID=Rn.18990.1 /TIER=ConsEnd /STK=2 /UG=Rn.18990 /UG_TITLE=ESTs BM385008 1391927_at BE100100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100100 /DB_XREF=gi:8491987 /DB_XREF=UI-R-BJ1-atm-f-11-0-UI.s1 /CLONE=UI-R-BJ1-atm-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.49937.1 /TIER=ConsEnd /STK=2 /UG=Rn.49937 /UG_TITLE=ESTs BE100100 1391928_at BF418827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418827 /DB_XREF=gi:11406816 /DB_XREF=UI-R-BJ2-bqj-d-09-0-UI.s1 /CLONE=UI-R-BJ2-bqj-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.64094.1 /TIER=ConsEnd /STK=2 /UG=Rn.64094 /UG_TITLE=ESTs BF418827 golgi associated PDZ and coiled-coil motif containing Gopc 309774 NM_001107631 0007289 // spermatid nucleus differentiation // not recorded /// 0007289 // spermatid nucleus differentiation // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded /// 0051260 // protein homooligomerization // not recorded /// 0051260 // protein homooligomerization // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0019717 // synaptosome // inferred from electronic annotation /// 0030140 // trans-Golgi network transport vesicle // not recorded /// 0030140 // trans-Golgi network transport vesicle // inferred from electronic annotation 0005083 // small GTPase regulator activity // not recorded /// 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042980 // cystic fibrosis transmembrane conductance regulator binding // not recorded /// 0042980 // cystic fibrosis transmembrane conductance regulator binding // inferred from electronic annotation 1391929_at AI231461 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231461 /DB_XREF=gi:4135651 /DB_XREF=EST228149 /CLONE=REMDK44 /FEA=EST /CNT=3 /TID=Rn.24577.1 /TIER=ConsEnd /STK=2 /UG=Rn.24577 /UG_TITLE=ESTs AI231461 1391930_at AI408871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408871 /DB_XREF=gi:4252375 /DB_XREF=EST237162 /CLONE=RKIDP84 /FEA=EST /CNT=3 /TID=Rn.43429.1 /TIER=ConsEnd /STK=2 /UG=Rn.43429 /UG_TITLE=ESTs AI408871 1391931_at BG372611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372611 /DB_XREF=gi:13269148 /DB_XREF=UI-R-CV1-brs-c-08-0-UI.s1 /CLONE=UI-R-CV1-brs-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.33094.1 /TIER=ConsEnd /STK=2 /UG=Rn.33094 /UG_TITLE=ESTs BG372611 1391932_at BI275030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275030 /DB_XREF=gi:14886494 /DB_XREF=UI-R-CX0-bwt-h-02-0-UI.s1 /CLONE=UI-R-CX0-bwt-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.21161.1 /TIER=ConsEnd /STK=2 /UG=Rn.21161 /UG_TITLE=ESTs BI275030 similar to hypothetical protein MGC47256 RGD1308694 295326 NM_001106456 1391933_at BF392746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392746 /DB_XREF=gi:11377598 /DB_XREF=UI-R-CA0-bfm-g-01-0-UI.s1 /CLONE=UI-R-CA0-bfm-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.57896.1 /TIER=ConsEnd /STK=2 /UG=Rn.57896 /UG_TITLE=ESTs BF392746 hypothetical protein LOC100360671 LOC100360671 100360671 XM_002728598 1391934_at AI059392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059392 /DB_XREF=gi:3333169 /DB_XREF=UI-R-C1-le-d-03-0-UI.s1 /CLONE=UI-R-C1-le-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.19161.1 /TIER=ConsEnd /STK=2 /UG=Rn.19161 /UG_TITLE=ESTs AI059392 1391935_at AI575608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575608 /DB_XREF=gi:4559984 /DB_XREF=UI-R-Y0-vi-b-01-0-UI.s1 /CLONE=UI-R-Y0-vi-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.33293.1 /TIER=ConsEnd /STK=2 /UG=Rn.33293 /UG_TITLE=ESTs AI575608 eukaryotic translation initiation factor 4E member 3 Eif4e3 297481 NM_001106612 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation 1391936_a_at BI289110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289110 /DB_XREF=gi:14946342 /DB_XREF=UI-R-DK0-cfe-f-03-0-UI.s1 /CLONE=UI-R-DK0-cfe-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.45026.1 /TIER=ConsEnd /STK=2 /UG=Rn.45026 /UG_TITLE=ESTs BI289110 1391937_at BI296083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296083 /DB_XREF=gi:14960170 /DB_XREF=UI-R-DK0-cew-b-07-0-UI.s1 /CLONE=UI-R-DK0-cew-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.71879.1 /TIER=ConsEnd /STK=2 /UG=Rn.71879 /UG_TITLE=ESTs BI296083 1391938_at BF404988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404988 /DB_XREF=gi:11392963 /DB_XREF=UI-R-CA1-bio-b-03-0-UI.s1 /CLONE=UI-R-CA1-bio-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.62229.1 /TIER=ConsEnd /STK=2 /UG=Rn.62229 /UG_TITLE=ESTs, Moderately similar to I58376 hypothetical protein unp - mouse (M.musculus) BF404988 ubiquitin specific peptidase 11 Usp11 408217 NM_001008861 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0016579 // protein deubiquitination // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement 0004197 // cysteine-type endopeptidase activity // traceable author statement /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1391939_at BI294978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294978 /DB_XREF=gi:14957962 /DB_XREF=UI-R-DK0-cee-d-02-0-UI.s1 /CLONE=UI-R-DK0-cee-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.34793.1 /TIER=ConsEnd /STK=2 /UG=Rn.34793 /UG_TITLE=ESTs BI294978 1391940_at AI600070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600070 /DB_XREF=gi:4609118 /DB_XREF=EST251773 /CLONE=REMDQ40 /FEA=EST /CNT=2 /TID=Rn.40443.1 /TIER=ConsEnd /STK=2 /UG=Rn.40443 /UG_TITLE=ESTs AI600070 Translocase of inner mitochondrial membrane 44 homolog (yeast) Timm44 29635 NM_017267 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from mutant phenotype /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from mutant phenotype /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005744 // mitochondrial inner membrane presequence translocase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0051087 // chaperone binding // inferred from physical interaction 1391941_at BI289372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289372 /DB_XREF=gi:14946867 /DB_XREF=UI-R-DK0-cfg-b-08-0-UI.s1 /CLONE=UI-R-DK0-cfg-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.79028.1 /TIER=ConsEnd /STK=2 /UG=Rn.79028 /UG_TITLE=ESTs BI289372 1391942_at BF402576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402576 /DB_XREF=gi:11390551 /DB_XREF=UI-R-CA0-bhm-a-06-0-UI.s1 /CLONE=UI-R-CA0-bhm-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.57308.1 /TIER=ConsEnd /STK=2 /UG=Rn.57308 /UG_TITLE=ESTs BF402576 1391943_at BF393061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393061 /DB_XREF=gi:11377921 /DB_XREF=UI-R-CA0-bgp-h-04-0-UI.s1 /CLONE=UI-R-CA0-bgp-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.57975.1 /TIER=ConsEnd /STK=2 /UG=Rn.57975 /UG_TITLE=ESTs BF393061 1391944_at BI296237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296237 /DB_XREF=gi:14960477 /DB_XREF=UI-R-DK0-cey-a-01-0-UI.s1 /CLONE=UI-R-DK0-cey-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.46367.1 /TIER=ConsEnd /STK=2 /UG=Rn.46367 /UG_TITLE=ESTs BI296237 1391945_at BF393843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393843 /DB_XREF=gi:11378706 /DB_XREF=UI-R-CA0-bgv-f-02-0-UI.s1 /CLONE=UI-R-CA0-bgv-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.58145.1 /TIER=ConsEnd /STK=2 /UG=Rn.58145 /UG_TITLE=ESTs BF393843 1391946_at BI296054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296054 /DB_XREF=gi:14960112 /DB_XREF=UI-R-DK0-cfd-g-11-0-UI.s1 /CLONE=UI-R-DK0-cfd-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.38199.1 /TIER=ConsEnd /STK=2 /UG=Rn.38199 /UG_TITLE=ESTs BI296054 selectin P Selp 25651 NM_013114 0002687 // positive regulation of leukocyte migration // inferred from electronic annotation /// 0002687 // positive regulation of leukocyte migration // not recorded /// 0002691 // regulation of cellular extravasation // inferred from mutant phenotype /// 0006954 // inflammatory response // inferred from mutant phenotype /// 0006954 // inflammatory response // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007157 // heterophilic cell-cell adhesion // inferred from electronic annotation /// 0007157 // heterophilic cell-cell adhesion // not recorded /// 0007159 // leukocyte cell-cell adhesion // not recorded /// 0007159 // leukocyte cell-cell adhesion // inferred from electronic annotation /// 0010572 // positive regulation of platelet activation // inferred from electronic annotation /// 0010572 // positive regulation of platelet activation // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016337 // cell-cell adhesion // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0045785 // positive regulation of cell adhesion // inferred from mutant phenotype /// 0048514 // blood vessel morphogenesis // inferred from mutant phenotype /// 0050900 // leukocyte migration // inferred from mutant phenotype /// 0050901 // leukocyte tethering or rolling // inferred from electronic annotation /// 0050901 // leukocyte tethering or rolling // not recorded 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031088 // platelet dense granule membrane // not recorded /// 0031092 // platelet alpha granule membrane // inferred from electronic annotation /// 0031092 // platelet alpha granule membrane // not recorded 0001530 // lipopolysaccharide binding // inferred from electronic annotation /// 0001530 // lipopolysaccharide binding // not recorded /// 0001948 // glycoprotein binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded /// 0033691 // sialic acid binding // inferred from electronic annotation /// 0033691 // sialic acid binding // not recorded /// 0042806 // fucose binding // inferred from electronic annotation /// 0042806 // fucose binding // not recorded /// 0043499 // eukaryotic cell surface binding // inferred from mutant phenotype /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded /// 0070492 // oligosaccharide binding // inferred from electronic annotation /// 0070492 // oligosaccharide binding // not recorded 1391947_at BM386499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386499 /DB_XREF=gi:18186552 /DB_XREF=UI-R-CN1-cjg-k-19-0-UI.s1 /CLONE=UI-R-CN1-cjg-k-19-0-UI /FEA=EST /CNT=2 /TID=Rn.81798.1 /TIER=ConsEnd /STK=2 /UG=Rn.81798 /UG_TITLE=ESTs BM386499 1391948_at BM390227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390227 /DB_XREF=gi:18190280 /DB_XREF=UI-R-CN1-cjq-g-19-0-UI.s1 /CLONE=UI-R-CN1-cjq-g-19-0-UI /FEA=EST /CNT=2 /TID=Rn.52873.1 /TIER=ConsEnd /STK=2 /UG=Rn.52873 /UG_TITLE=ESTs BM390227 B-cell CLL/lymphoma 11B (zinc finger protein) Bcl11b 314423 NM_001108057 0007409 // axonogenesis // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009791 // post-embryonic development // not recorded /// 0021953 // central nervous system neuron differentiation // not recorded /// 0031077 // post-embryonic camera-type eye development // not recorded /// 0033153 // T cell receptor V(D)J recombination // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046632 // alpha-beta T cell differentiation // not recorded /// 0048538 // thymus development // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1391949_at BF404631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404631 /DB_XREF=gi:11392606 /DB_XREF=UI-R-CA1-bih-g-09-0-UI.s1 /CLONE=UI-R-CA1-bih-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.58636.1 /TIER=ConsEnd /STK=2 /UG=Rn.58636 /UG_TITLE=ESTs BF404631 1391950_at AA944420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944420 /DB_XREF=gi:3104336 /DB_XREF=EST199919 /CLONE=REMAG95 /FEA=EST /CNT=2 /TID=Rn.24215.1 /TIER=ConsEnd /STK=2 /UG=Rn.24215 /UG_TITLE=ESTs AA944420 1391951_at BI296447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296447 /DB_XREF=gi:14960880 /DB_XREF=UI-R-CV2-cgr-c-10-0-UI.s1 /CLONE=UI-R-CV2-cgr-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.74470.1 /TIER=ConsEnd /STK=2 /UG=Rn.74470 /UG_TITLE=ESTs BI296447 1391952_at BE110628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110628 /DB_XREF=gi:8502733 /DB_XREF=UI-R-BJ1-avu-b-09-0-UI.s1 /CLONE=UI-R-BJ1-avu-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.43200.1 /TIER=ConsEnd /STK=2 /UG=Rn.43200 /UG_TITLE=ESTs, Moderately similar to S14234 hypothetical protein - mouse (M.musculus) BE110628 1391953_at BI284209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284209 /DB_XREF=gi:14936683 /DB_XREF=UI-R-CX0s-ccn-e-05-0-UI.s1 /CLONE=UI-R-CX0s-ccn-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.50579.1 /TIER=ConsEnd /STK=2 /UG=Rn.50579 /UG_TITLE=ESTs BI284209 msh homeobox 2 Msx2 25483 NM_012982 0001503 // ossification // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0001649 // osteoblast differentiation // inferred from sequence or structural similarity /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030509 // BMP signaling pathway // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // not recorded /// 0071392 // cellular response to estradiol stimulus // inferred from electronic annotation /// 0071392 // cellular response to estradiol stimulus // not recorded /// 0071445 // cellular response to protein stimulus // inferred from electronic annotation /// 0071445 // cellular response to protein stimulus // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from sequence or structural similarity /// 0010843 // promoter binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1391954_at BF400813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400813 /DB_XREF=gi:11388828 /DB_XREF=UI-R-CA0-bhg-e-10-0-UI.s1 /CLONE=UI-R-CA0-bhg-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.59656.1 /TIER=ConsEnd /STK=2 /UG=Rn.59656 /UG_TITLE=ESTs BF400813 1391955_at BI291339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291339 /DB_XREF=gi:14950786 /DB_XREF=UI-R-CV2-cgo-g-07-0-UI.s1 /CLONE=UI-R-CV2-cgo-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.53184.1 /TIER=ConsEnd /STK=2 /UG=Rn.53184 /UG_TITLE=ESTs BI291339 RAB19, member RAS oncogene family Rab19 500088 NM_001024326 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1391956_at BF393928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393928 /DB_XREF=gi:11378792 /DB_XREF=UI-R-CA0-bgw-g-04-0-UI.s1 /CLONE=UI-R-CA0-bgw-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.58171.1 /TIER=ConsEnd /STK=2 /UG=Rn.58171 /UG_TITLE=ESTs BF393928 1391957_at BE113374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113374 /DB_XREF=gi:8505479 /DB_XREF=UI-R-BJ1-awe-f-04-0-UI.s1 /CLONE=UI-R-BJ1-awe-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.52179.1 /TIER=ConsEnd /STK=2 /UG=Rn.52179 /UG_TITLE=ESTs BE113374 katanin p60 subunit A-like 1 Katnal1 288449 NM_001006956 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008568 // microtubule-severing ATPase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1391958_at BE119699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119699 /DB_XREF=gi:8511804 /DB_XREF=UI-R-CA0-baz-h-07-0-UI.s1 /CLONE=UI-R-CA0-baz-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.38191.1 /TIER=ConsEnd /STK=2 /UG=Rn.38191 /UG_TITLE=ESTs BE119699 1391959_at BM387121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387121 /DB_XREF=gi:18187174 /DB_XREF=UI-R-CN1-cji-b-07-0-UI.s1 /CLONE=UI-R-CN1-cji-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.72370.1 /TIER=ConsEnd /STK=2 /UG=Rn.72370 /UG_TITLE=ESTs BM387121 1391960_at AW253967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253967 /DB_XREF=gi:6597558 /DB_XREF=UI-R-BJ0-aed-e-03-0-UI.s1 /CLONE=UI-R-BJ0-aed-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.44797.1 /TIER=ConsEnd /STK=2 /UG=Rn.44797 /UG_TITLE=ESTs, Weakly similar to nidogen 2; entactin 2 (Mus musculus) (M.musculus) AW253967 rCG38188-like /// hypothetical protein LOC100363207 /// rCG38188-like /// similar to nidogen 2 protein /// similar to nidogen 2 /// similar to nidogen 2 /// similar to Nidogen-2 precursor (NID-2) (Osteonidogen) /// nidogen 2 /// similar to nidogen 2 /// similar to nidogen 2 /// similar to MIC2 like 1 /// similar to nidogen 2 /// similar to nidogen 2 protein LOC100362881 /// LOC100363207 /// LOC100365122 /// LOC302022 /// LOC305771 /// LOC316493 /// LOC363417 /// LOC501268 /// LOC503326 /// LOC679769 /// LOC687005 /// LOC691282 /// RGD1562856 100362881 /// 100363207 /// 100365122 /// 302022 /// 305771 /// 316493 /// 363417 /// 498627 /// 501268 /// 503326 /// 679769 /// 687005 /// 691282 NM_001127530 /// XM_001077529 /// XM_002726067 /// XM_002726734 /// XM_002727157 /// XM_002727267 /// XM_002727299 /// XM_002727466 /// XM_002728407 /// XM_002729140 /// XM_002729141 /// XM_002729778 /// XM_002730087 /// XM_002730088 /// XM_002730151 /// XR_007015 1391961_a_at BI283648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283648 /DB_XREF=gi:14935605 /DB_XREF=UI-R-CW0s-ccg-a-11-0-UI.s1 /CLONE=UI-R-CW0s-ccg-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.66004.1 /TIER=ConsEnd /STK=2 /UG=Rn.66004 /UG_TITLE=ESTs BI283648 1391962_at BF402644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402644 /DB_XREF=gi:11390619 /DB_XREF=UI-R-CA0-bhm-h-07-0-UI.s1 /CLONE=UI-R-CA0-bhm-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.54014.1 /TIER=ConsEnd /STK=2 /UG=Rn.54014 /UG_TITLE=ESTs BF402644 1391963_at BF396103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396103 /DB_XREF=gi:11381075 /DB_XREF=UI-R-CA1-bcb-d-04-0-UI.s1 /CLONE=UI-R-CA1-bcb-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.58525.1 /TIER=ConsEnd /STK=2 /UG=Rn.58525 /UG_TITLE=ESTs BF396103 1391964_at BI300993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300993 /DB_XREF=gi:14977273 /DB_XREF=UI-R-DK0-cfk-f-11-0-UI.s2 /CLONE=UI-R-DK0-cfk-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.53453.1 /TIER=ConsEnd /STK=2 /UG=Rn.53453 /UG_TITLE=ESTs, Moderately similar to T45294 hypothetical protein KIAA1088 (H.sapiens) BI300993 regulator of telomere elongation helicase 1 Rtel1 362288 NM_001191857 /// XM_001057789 /// XM_342602 0000723 // telomere maintenance // not recorded /// 0000723 // telomere maintenance // inferred from sequence or structural similarity /// 0000723 // telomere maintenance // inferred from electronic annotation /// 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010569 // regulation of double-strand break repair via homologous recombination // not recorded /// 0010569 // regulation of double-strand break repair via homologous recombination // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // not recorded /// 0004003 // ATP-dependent DNA helicase activity // inferred from sequence or structural similarity /// 0004003 // ATP-dependent DNA helicase activity // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation 1391965_at BE113310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113310 /DB_XREF=gi:8505380 /DB_XREF=UI-R-BJ1-awd-e-09-0-UI.s1 /CLONE=UI-R-BJ1-awd-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.65020.1 /TIER=ConsEnd /STK=2 /UG=Rn.65020 /UG_TITLE=ESTs BE113310 1391966_at BG380804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380804 /DB_XREF=gi:13305276 /DB_XREF=UI-R-CT0-bub-f-02-0-UI.s1 /CLONE=UI-R-CT0-bub-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.49501.1 /TIER=ConsEnd /STK=2 /UG=Rn.49501 /UG_TITLE=ESTs BG380804 1391967_at BM389832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389832 /DB_XREF=gi:18189885 /DB_XREF=UI-R-CN1-cjp-l-17-0-UI.s1 /CLONE=UI-R-CN1-cjp-l-17-0-UI /FEA=EST /CNT=2 /TID=Rn.66354.1 /TIER=ConsEnd /STK=2 /UG=Rn.66354 /UG_TITLE=ESTs BM389832 1391968_at BM389535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389535 /DB_XREF=gi:18189593 /DB_XREF=UI-R-CN1-cjn-f-04-0-UI.s1 /CLONE=UI-R-CN1-cjn-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.73990.1 /TIER=ConsEnd /STK=2 /UG=Rn.73990 /UG_TITLE=ESTs BM389535 1391969_at BG378118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378118 /DB_XREF=gi:13302590 /DB_XREF=UI-R-CV1-bvo-b-08-0-UI.s1 /CLONE=UI-R-CV1-bvo-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.66542.1 /TIER=ConsEnd /STK=2 /UG=Rn.66542 /UG_TITLE=ESTs BG378118 hairy/enhancer-of-split related with YRPW motif-like Heyl 313575 NM_001107977 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1391970_at BM385197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385197 /DB_XREF=gi:18185250 /DB_XREF=UI-R-CN1-cjs-d-12-0-UI.s2 /CLONE=UI-R-CN1-cjs-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.19900.1 /TIER=ConsEnd /STK=2 /UG=Rn.19900 /UG_TITLE=ESTs, Weakly similar to A Chain A, Crystal Structure Of S-Glutathiolated Carbonic Anhydrase Iii (R.norvegicus) BM385197 carbonic anhydrase 11 Car11 308588 NM_175708 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded 1391971_at BG667026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667026 /DB_XREF=gi:13888948 /DB_XREF=DRABQF08 /CLONE=DRABQF08 /FEA=EST /CNT=2 /TID=Rn.13466.1 /TIER=ConsEnd /STK=2 /UG=Rn.13466 /UG_TITLE=ESTs BG667026 1391972_a_at BE108410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108410 /DB_XREF=gi:8500515 /DB_XREF=UI-R-BS1-ayv-h-11-0-UI.s1 /CLONE=UI-R-BS1-ayv-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.20813.1 /TIER=ConsEnd /STK=2 /UG=Rn.20813 /UG_TITLE=ESTs BE108410 zinc finger, SWIM-type containing 4 Zswim4 304655 NM_001107163 0008270 // zinc ion binding // inferred from electronic annotation 1391973_at BF404506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404506 /DB_XREF=gi:11392521 /DB_XREF=UI-R-CA1-big-g-03-0-UI.s1 /CLONE=UI-R-CA1-big-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.50629.1 /TIER=ConsEnd /STK=2 /UG=Rn.50629 /UG_TITLE=ESTs BF404506 1391974_at BF414433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414433 /DB_XREF=gi:11402417 /DB_XREF=UI-R-CA0-bpa-c-11-0-UI.s1 /CLONE=UI-R-CA0-bpa-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.62536.1 /TIER=ConsEnd /STK=2 /UG=Rn.62536 /UG_TITLE=ESTs BF414433 1391975_at BF400601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400601 /DB_XREF=gi:11388576 /DB_XREF=UI-R-CA0-bhd-c-12-0-UI.s1 /CLONE=UI-R-CA0-bhd-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.57436.1 /TIER=ConsEnd /STK=2 /UG=Rn.57436 /UG_TITLE=ESTs BF400601 1391976_at BI286417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286417 /DB_XREF=gi:14941042 /DB_XREF=UI-R-DE0-cak-f-12-0-UI.s1 /CLONE=UI-R-DE0-cak-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.12316.1 /TIER=ConsEnd /STK=2 /UG=Rn.12316 /UG_TITLE=ESTs BI286417 SIX homeobox 4 Six4 299138 NM_001106739 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0042472 // inner ear morphogenesis // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048538 // thymus development // not recorded /// 0048699 // generation of neurons // not recorded /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048856 // anatomical structure development // not recorded /// 0051451 // myoblast migration // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1391977_at AA819560 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819560 /DB_XREF=gi:4228696 /DB_XREF=UI-R-A0-bf-h-12-0-UI.s1 /CLONE=UI-R-A0-bf-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.16789.1 /TIER=ConsEnd /STK=2 /UG=Rn.16789 /UG_TITLE=ESTs AA819560 1391978_at AW531885 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531885 /DB_XREF=gi:7174299 /DB_XREF=UI-R-BS0-amj-d-10-0-UI.s1 /CLONE=UI-R-BS0-amj-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.47840.1 /TIER=ConsEnd /STK=2 /UG=Rn.47840 /UG_TITLE=ESTs AW531885 Son DNA binding protein Son 304092 NM_001170327 /// NM_001170328 0006916 // anti-apoptosis // not recorded 0005622 // intracellular // inferred from electronic annotation 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0050733 // RS domain binding // not recorded 1391979_at AA851345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851345 /DB_XREF=gi:2938885 /DB_XREF=EST194113 /CLONE=RPLAF52 /FEA=EST /CNT=2 /TID=Rn.6731.1 /TIER=ConsEnd /STK=2 /UG=Rn.6731 /UG_TITLE=ESTs AA851345 1391980_at BF394201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394201 /DB_XREF=gi:11379065 /DB_XREF=UI-R-CA0-bhb-g-01-0-UI.s1 /CLONE=UI-R-CA0-bhb-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.58240.1 /TIER=ConsEnd /STK=2 /UG=Rn.58240 /UG_TITLE=ESTs, Moderately similar to T13057 KIAA0729 protein (H.sapiens) BF394201 similar to ubiquitin specific protease 34 LOC360990 360990 XM_002725026 /// XM_002728139 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1391981_at AI639181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639181 /DB_XREF=gi:4700215 /DB_XREF=rx03901s /CLONE=rx03901 /FEA=EST /CNT=2 /TID=Rn.43313.1 /TIER=ConsEnd /STK=2 /UG=Rn.43313 /UG_TITLE=ESTs AI639181 1391982_at BF403851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403851 /DB_XREF=gi:11391826 /DB_XREF=UI-R-CA1-bix-j-23-0-UI.s1 /CLONE=UI-R-CA1-bix-j-23-0-UI /FEA=EST /CNT=2 /TID=Rn.61179.1 /TIER=ConsEnd /STK=2 /UG=Rn.61179 /UG_TITLE=ESTs BF403851 1391983_at BI281586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281586 /DB_XREF=gi:14931469 /DB_XREF=UI-R-CT0s-cau-b-01-0-UI.s1 /CLONE=UI-R-CT0s-cau-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.50288.1 /TIER=ConsEnd /STK=2 /UG=Rn.50288 /UG_TITLE=ESTs BI281586 hypothetical gene supported by BC079424 LOC500227 500227 NM_001024330 1391984_at AI412161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412161 /DB_XREF=gi:4255665 /DB_XREF=EST240455 /CLONE=RKIEG95 /FEA=EST /CNT=2 /TID=Rn.15762.1 /TIER=ConsEnd /STK=2 /UG=Rn.15762 /UG_TITLE=ESTs AI412161 1391985_at BI288541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288541 /DB_XREF=gi:14945229 /DB_XREF=UI-R-DK0-cdg-b-03-0-UI.s1 /CLONE=UI-R-DK0-cdg-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.50762.1 /TIER=ConsEnd /STK=2 /UG=Rn.50762 /UG_TITLE=ESTs BI288541 nuclear receptor interacting protein 3 Nrip3 361625 NM_001108498 0006508 // proteolysis // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1391986_at BF398428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398428 /DB_XREF=gi:11383418 /DB_XREF=UI-R-BS2-beo-g-05-0-UI.s1 /CLONE=UI-R-BS2-beo-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.59072.1 /TIER=ConsEnd /STK=2 /UG=Rn.59072 /UG_TITLE=ESTs BF398428 1391987_at BF399470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399470 /DB_XREF=gi:11384478 /DB_XREF=UI-R-CA1-bjb-n-23-0-UI.s1 /CLONE=UI-R-CA1-bjb-n-23-0-UI /FEA=EST /CNT=2 /TID=Rn.66306.1 /TIER=ConsEnd /STK=2 /UG=Rn.66306 /UG_TITLE=ESTs BF399470 1391988_at BI296571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296571 /DB_XREF=gi:14961137 /DB_XREF=UI-R-CV2-cgs-g-12-0-UI.s1 /CLONE=UI-R-CV2-cgs-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.73463.1 /TIER=ConsEnd /STK=2 /UG=Rn.73463 /UG_TITLE=ESTs BI296571 1391989_at AI179410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179410 /DB_XREF=gi:3730048 /DB_XREF=EST223114 /CLONE=RSPCG89 /FEA=EST /CNT=2 /TID=Rn.23270.1 /TIER=ConsEnd /STK=2 /UG=Rn.23270 /UG_TITLE=ESTs AI179410 1391990_at BF405569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405569 /DB_XREF=gi:11393544 /DB_XREF=UI-R-CA1-bix-e-06-0-UI.s1 /CLONE=UI-R-CA1-bix-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.60191.1 /TIER=ConsEnd /STK=2 /UG=Rn.60191 /UG_TITLE=ESTs BF405569 1391991_at BI296617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296617 /DB_XREF=gi:14961220 /DB_XREF=UI-R-CV2-cgt-c-12-0-UI.s1 /CLONE=UI-R-CV2-cgt-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.73072.1 /TIER=ConsEnd /STK=2 /UG=Rn.73072 /UG_TITLE=ESTs BI296617 1391992_at AI639517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639517 /DB_XREF=gi:4700551 /DB_XREF=rx00670s /CLONE=rx00670 /FEA=EST /CNT=2 /TID=Rn.43981.1 /TIER=ConsEnd /STK=2 /UG=Rn.43981 /UG_TITLE=ESTs AI639517 1391993_at BF395823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395823 /DB_XREF=gi:11380794 /DB_XREF=UI-R-BT1-bkc-f-10-0-UI.s1 /CLONE=UI-R-BT1-bkc-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.57570.1 /TIER=ConsEnd /STK=2 /UG=Rn.57570 /UG_TITLE=ESTs BF395823 1391994_at AI408264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408264 /DB_XREF=gi:4251768 /DB_XREF=EST236554 /CLONE=ROVET85 /FEA=EST /CNT=2 /TID=Rn.30602.1 /TIER=ConsEnd /STK=2 /UG=Rn.30602 /UG_TITLE=ESTs AI408264 1391995_at BG377975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377975 /DB_XREF=gi:13302447 /DB_XREF=UI-R-CU0-bvh-d-06-0-UI.s1 /CLONE=UI-R-CU0-bvh-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.11708.1 /TIER=ConsEnd /STK=2 /UG=Rn.11708 /UG_TITLE=ESTs BG377975 tripartite motif-containing 37 Trim37 360592 NM_001108288 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1391996_a_at BI284367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284367 /DB_XREF=gi:14936981 /DB_XREF=UI-R-CX0s-cco-c-11-0-UI.s1 /CLONE=UI-R-CX0s-cco-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.54114.1 /TIER=ConsEnd /STK=2 /UG=Rn.54114 /UG_TITLE=ESTs BI284367 1391997_at AW523656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523656 /DB_XREF=gi:7166041 /DB_XREF=UI-R-BO0-aic-f-04-0-UI.s1 /CLONE=UI-R-BO0-aic-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.6679.1 /TIER=ConsEnd /STK=2 /UG=Rn.6679 /UG_TITLE=ESTs AW523656 Similar to jumonji domain containing 2B LOC301128 301128 NM_001044236 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1391998_at BE107625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107625 /DB_XREF=gi:8499730 /DB_XREF=UI-R-CA0-awv-h-01-0-UI.s1 /CLONE=UI-R-CA0-awv-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.51228.1 /TIER=ConsEnd /STK=2 /UG=Rn.51228 /UG_TITLE=ESTs BE107625 PHD finger protein 20-like 1 Phf20l1 314964 NM_001025702 0003676 // nucleic acid binding // inferred from electronic annotation 1391999_at BI301720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301720 /DB_XREF=gi:14978000 /DB_XREF=UI-R-DL0-cin-f-09-0-UI.s1 /CLONE=UI-R-DL0-cin-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.52741.1 /TIER=ConsEnd /STK=2 /UG=Rn.52741 /UG_TITLE=ESTs BI301720 1392000_at BF405192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405192 /DB_XREF=gi:11393167 /DB_XREF=UI-R-CA1-biq-h-08-0-UI.s1 /CLONE=UI-R-CA1-biq-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.38490.1 /TIER=ConsEnd /STK=2 /UG=Rn.38490 /UG_TITLE=ESTs, Highly similar to S21348 probable pol polyprotein-related protein 4 - rat (R.norvegicus) BF405192 1392001_at AI232305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232305 /DB_XREF=gi:3816185 /DB_XREF=EST228993 /CLONE=RKICA02 /FEA=EST /CNT=2 /TID=Rn.42371.1 /TIER=ConsEnd /STK=2 /UG=Rn.42371 /UG_TITLE=ESTs AI232305 1392002_at AI411977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411977 /DB_XREF=gi:4255481 /DB_XREF=EST240271 /CLONE=RKIEJ10 /FEA=EST /CNT=2 /TID=Rn.20368.1 /TIER=ConsEnd /STK=2 /UG=Rn.20368 /UG_TITLE=ESTs, Weakly similar to 2123329A proto-cadherin 3 (R.norvegicus) AI411977 protocadherin beta 22 Pcdhb22 307486 XM_001056235 /// XM_001065549 0007156 // homophilic cell adhesion // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1392003_at AA943753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943753 /DB_XREF=gi:3103669 /DB_XREF=EST199252 /CLONE=RBRAP24 /FEA=EST /CNT=2 /TID=Rn.53535.1 /TIER=ConsEnd /STK=2 /UG=Rn.53535 /UG_TITLE=ESTs AA943753 1392004_at AI231080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231080 /DB_XREF=gi:3814960 /DB_XREF=EST227768 /CLONE=REMDF05 /FEA=EST /CNT=2 /TID=Rn.63558.1 /TIER=ConsEnd /STK=2 /UG=Rn.63558 /UG_TITLE=ESTs AI231080 1392005_at BF396526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396526 /DB_XREF=gi:11381500 /DB_XREF=UI-R-BS2-bdz-b-07-0-UI.s1 /CLONE=UI-R-BS2-bdz-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.34445.1 /TIER=ConsEnd /STK=2 /UG=Rn.34445 /UG_TITLE=ESTs BF396526 1392006_at AA899447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899447 /DB_XREF=gi:4231945 /DB_XREF=UI-R-E0-cu-f-06-0-UI.s2 /CLONE=UI-R-E0-cu-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.14934.1 /TIER=ConsEnd /STK=2 /UG=Rn.14934 /UG_TITLE=ESTs AA899447 1392007_at AI044568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044568 /DB_XREF=gi:3291429 /DB_XREF=UI-R-C1-jw-d-01-0-UI.s1 /CLONE=UI-R-C1-jw-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.15949.1 /TIER=ConsEnd /STK=2 /UG=Rn.15949 /UG_TITLE=ESTs AI044568 USP6 N-terminal like Usp6nl 291309 NM_001106120 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1392008_at BM392331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392331 /DB_XREF=gi:18192384 /DB_XREF=UI-R-DO1-ckp-j-08-0-UI.s1 /CLONE=UI-R-DO1-ckp-j-08-0-UI /FEA=EST /CNT=2 /TID=Rn.66676.1 /TIER=ConsEnd /STK=2 /UG=Rn.66676 /UG_TITLE=ESTs BM392331 PAS domain containing serine/threonine kinase Pask 301617 NM_001009362 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1392009_at AW523649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523649 /DB_XREF=gi:7166034 /DB_XREF=UI-R-BO0-aic-e-07-0-UI.s1 /CLONE=UI-R-BO0-aic-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.45699.1 /TIER=ConsEnd /STK=2 /UG=Rn.45699 /UG_TITLE=ESTs AW523649 1392010_at BF401644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401644 /DB_XREF=gi:11389619 /DB_XREF=UI-R-CA0-bgn-a-05-0-UI.s1 /CLONE=UI-R-CA0-bgn-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.57662.1 /TIER=ConsEnd /STK=2 /UG=Rn.57662 /UG_TITLE=ESTs, Moderately similar to NGP1_HUMAN AUTOANTIGEN NGP-1 (H.sapiens) BF401644 guanine nucleotide binding protein-like 2 (nucleolar) Gnl2 362593 NM_001025736 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1392011_at BM384514 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384514 /DB_XREF=gi:18184567 /DB_XREF=UI-R-CN1-cjs-b-11-0-UI.s2 /CLONE=UI-R-CN1-cjs-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.63125.1 /TIER=ConsEnd /STK=2 /UG=Rn.63125 /UG_TITLE=ESTs BM384514 1392012_at BE100353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100353 /DB_XREF=gi:8492244 /DB_XREF=UI-R-BJ1-att-e-06-0-UI.s1 /CLONE=UI-R-BJ1-att-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.49959.1 /TIER=ConsEnd /STK=2 /UG=Rn.49959 /UG_TITLE=ESTs BE100353 similar to Epiplakin LOC686567 686567 XM_001074770 0005856 // cytoskeleton // inferred from electronic annotation 1392013_at AA819397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819397 /DB_XREF=gi:4228535 /DB_XREF=UI-R-A0-bl-e-01-0-UI.s1 /CLONE=UI-R-A0-bl-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.16756.1 /TIER=ConsEnd /STK=2 /UG=Rn.16756 /UG_TITLE=ESTs AA819397 1392014_at BF416257 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416257 /DB_XREF=gi:11404246 /DB_XREF=UI-R-CA0-bkr-d-01-0-UI.s1 /CLONE=UI-R-CA0-bkr-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.62967.1 /TIER=ConsEnd /STK=2 /UG=Rn.62967 /UG_TITLE=ESTs BF416257 1392015_at BF392359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392359 /DB_XREF=gi:11377216 /DB_XREF=UI-R-CA0-bfi-c-02-0-UI.s1 /CLONE=UI-R-CA0-bfi-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.57803.1 /TIER=ConsEnd /STK=2 /UG=Rn.57803 /UG_TITLE=ESTs BF392359 1392016_at AW533779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533779 /DB_XREF=gi:7176193 /DB_XREF=UI-R-BU0-anc-a-05-0-UI.s1 /CLONE=UI-R-BU0-anc-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.44950.1 /TIER=ConsEnd /STK=2 /UG=Rn.44950 /UG_TITLE=ESTs AW533779 1392017_at BF397766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397766 /DB_XREF=gi:11382750 /DB_XREF=UI-R-BS2-bee-d-04-0-UI.s1 /CLONE=UI-R-BS2-bee-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.58894.1 /TIER=ConsEnd /STK=2 /UG=Rn.58894 /UG_TITLE=ESTs BF397766 1392018_at BE120031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120031 /DB_XREF=gi:8512136 /DB_XREF=UI-R-CA0-bao-g-07-0-UI.s1 /CLONE=UI-R-CA0-bao-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.53440.1 /TIER=ConsEnd /STK=2 /UG=Rn.53440 /UG_TITLE=ESTs BE120031 1392019_at BG669281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669281 /DB_XREF=gi:13891203 /DB_XREF=DRNAAC03 /CLONE=DRNAAC03 /FEA=EST /CNT=2 /TID=Rn.54776.2 /TIER=ConsEnd /STK=2 /UG=Rn.54776 /UG_TITLE=ESTs, Weakly similar to A57514 RNA helicase HEL117 - rat (R.norvegicus) BG669281 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 Asap1 314961 NM_001044245 0007165 // signal transduction // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation /// 0046847 // filopodium assembly // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008093 // cytoskeletal adaptor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392020_at BF410474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410474 /DB_XREF=gi:11398449 /DB_XREF=UI-R-CA1-bjx-h-10-0-UI.s1 /CLONE=UI-R-CA1-bjx-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.71660.1 /TIER=ConsEnd /STK=2 /UG=Rn.71660 /UG_TITLE=ESTs, Moderately similar to T46337 hypothetical protein DKFZp434O2413.1 (H.sapiens) BF410474 centrosomal protein 164kDa Cep164 363055 XM_001064241 /// XM_343383 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392021_at BF388754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388754 /DB_XREF=gi:11373578 /DB_XREF=UI-R-BS2-bde-b-09-0-UI.s1 /CLONE=UI-R-BS2-bde-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.56811.1 /TIER=ConsEnd /STK=2 /UG=Rn.56811 /UG_TITLE=ESTs BF388754 1392022_at BF390674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390674 /DB_XREF=gi:11375521 /DB_XREF=UI-R-CA1-bco-a-01-0-UI.s1 /CLONE=UI-R-CA1-bco-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.61814.1 /TIER=ConsEnd /STK=2 /UG=Rn.61814 /UG_TITLE=ESTs BF390674 1392023_at AW434002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434002 /DB_XREF=gi:6965309 /DB_XREF=UI-R-BJ0p-afo-b-06-0-UI.s1 /CLONE=UI-R-BJ0p-afo-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.48528.1 /TIER=ConsEnd /STK=2 /UG=Rn.48528 /UG_TITLE=ESTs AW434002 1392024_at BF419641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419641 /DB_XREF=gi:11407630 /DB_XREF=UI-R-CA0-bpe-e-08-0-UI.s1 /CLONE=UI-R-CA0-bpe-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.63589.1 /TIER=ConsEnd /STK=2 /UG=Rn.63589 /UG_TITLE=ESTs BF419641 1392025_x_at BI303277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303277 /DB_XREF=gi:14979557 /DB_XREF=UI-R-DQ0-ciz-l-17-0-UI.s1 /CLONE=UI-R-DQ0-ciz-l-17-0-UI /FEA=EST /CNT=2 /TID=Rn.41199.1 /TIER=ConsEnd /STK=2 /UG=Rn.41199 /UG_TITLE=ESTs BI303277 1392026_at BF391823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391823 /DB_XREF=gi:11376678 /DB_XREF=UI-R-CA1-bcy-a-07-0-UI.s1 /CLONE=UI-R-CA1-bcy-a-07-0-UI /FEA=EST /CNT=2 /TID=Rn.63623.1 /TIER=ConsEnd /STK=2 /UG=Rn.63623 /UG_TITLE=ESTs BF391823 1392027_at BF396714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396714 /DB_XREF=gi:11381694 /DB_XREF=UI-R-BS2-beu-c-11-0-UI.s1 /CLONE=UI-R-BS2-beu-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.77594.1 /TIER=ConsEnd /STK=2 /UG=Rn.77594 /UG_TITLE=ESTs BF396714 1392028_at BI285481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285481 /DB_XREF=gi:14939163 /DB_XREF=UI-R-DD0-caa-f-07-0-UI.s1 /CLONE=UI-R-DD0-caa-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.20441.3 /TIER=ConsEnd /STK=2 /UG=Rn.20441 /UG_TITLE=ESTs BI285481 RGD1562704 RGD1562704 499665 XM_001055582 1392029_at BF403812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403812 /DB_XREF=gi:11391787 /DB_XREF=UI-R-CA1-bix-d-05-0-UI.s1 /CLONE=UI-R-CA1-bix-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.51880.1 /TIER=ConsEnd /STK=2 /UG=Rn.51880 /UG_TITLE=ESTs, Weakly similar to T08806 hypothetical protein DKFZp586I1023.1 (H.sapiens) BF403812 similar to CG14980-PB RGD1306410 360768 NM_001014126 0006350 // transcription // inferred from electronic annotation /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0000125 // PCAF complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1392030_at AI639112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639112 /DB_XREF=gi:4700146 /DB_XREF=rx04824s /CLONE=rx04824 /FEA=EST /CNT=2 /TID=Rn.43054.1 /TIER=ConsEnd /STK=2 /UG=Rn.43054 /UG_TITLE=ESTs AI639112 1392031_at BI280974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280974 /DB_XREF=gi:14930268 /DB_XREF=UI-R-DC0-bzo-f-03-0-UI.s1 /CLONE=UI-R-DC0-bzo-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.78130.1 /TIER=ConsEnd /STK=2 /UG=Rn.78130 /UG_TITLE=ESTs BI280974 1392032_at BF418025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418025 /DB_XREF=gi:11405974 /DB_XREF=UI-R-CA1-blv-a-11-0-UI.s1 /CLONE=UI-R-CA1-blv-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.63315.1 /TIER=ConsEnd /STK=2 /UG=Rn.63315 /UG_TITLE=ESTs BF418025 GRB2-related adaptor protein Grap 363616 NM_001025749 0005515 // protein binding // inferred from electronic annotation 1392033_a_at AW142000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142000 /DB_XREF=gi:6161859 /DB_XREF=EST292115 /CLONE=RGICR94 /FEA=EST /CNT=10 /TID=Rn.22406.3 /TIER=ConsEnd /STK=0 /UG=Rn.22406 /UG_TITLE=ESTs, Weakly similar to C42D8.3.p (Caenorhabditis elegans) (C.elegans) AW142000 pantothenate kinase 2 (Hallervorden-Spatz syndrome) Pank2 296167 NM_001106513 0015937 // coenzyme A biosynthetic process // inferred from electronic annotation 0004594 // pantothenate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1392034_at BE099812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099812 /DB_XREF=gi:8491692 /DB_XREF=UI-R-BJ1-atq-e-07-0-UI.s1 /CLONE=UI-R-BJ1-atq-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.56681.1 /TIER=ConsEnd /STK=2 /UG=Rn.56681 /UG_TITLE=ESTs BE099812 1392035_at AI010107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010107 /DB_XREF=gi:3223939 /DB_XREF=EST204558 /CLONE=RLUBT82 /FEA=EST /CNT=2 /TID=Rn.17525.1 /TIER=ConsEnd /STK=2 /UG=Rn.17525 /UG_TITLE=ESTs AI010107 1392036_at BE102087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102087 /DB_XREF=gi:8494186 /DB_XREF=UI-R-BT1-aqj-b-12-0-UI.s1 /CLONE=UI-R-BT1-aqj-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.66994.1 /TIER=ConsEnd /STK=2 /UG=Rn.66994 /UG_TITLE=ESTs BE102087 1392037_at BM383048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383048 /DB_XREF=gi:18183101 /DB_XREF=UI-R-DS0-cje-m-19-0-UI.s1 /CLONE=UI-R-DS0-cje-m-19-0-UI /FEA=EST /CNT=2 /TID=Rn.43297.1 /TIER=ConsEnd /STK=2 /UG=Rn.43297 /UG_TITLE=ESTs BM383048 1392038_at BF387389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387389 /DB_XREF=gi:11372213 /DB_XREF=UI-R-CA1-bbr-h-05-0-UI.s1 /CLONE=UI-R-CA1-bbr-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.49970.1 /TIER=ConsEnd /STK=2 /UG=Rn.49970 /UG_TITLE=ESTs BF387389 ADP-ribosylation factor-like 6 interacting protein 1 Arl6ip1 293551 NM_198737 0006613 // cotranslational protein targeting to membrane // inferred from electronic annotation /// 0006613 // cotranslational protein targeting to membrane // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005784 // Sec61 translocon complex // inferred from electronic annotation /// 0005784 // Sec61 translocon complex // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392039_at AI007657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI007657 /DB_XREF=gi:3221489 /DB_XREF=EST202108 /CLONE=RBRAS78 /FEA=EST /CNT=2 /TID=Rn.77479.1 /TIER=ConsEnd /STK=2 /UG=Rn.77479 /UG_TITLE=ESTs AI007657 1392040_at BE107904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107904 /DB_XREF=gi:8500009 /DB_XREF=UI-R-CA0-awy-b-07-0-UI.s1 /CLONE=UI-R-CA0-awy-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.51026.1 /TIER=ConsEnd /STK=2 /UG=Rn.51026 /UG_TITLE=ESTs BE107904 spindle assembly 6 homolog (C. elegans) Sass6 310807 NM_001107719 0007099 // centriole replication // not recorded /// 0051298 // centrosome duplication // not recorded 0005813 // centrosome // not recorded /// 0005814 // centriole // not recorded 1392041_at BE109924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109924 /DB_XREF=gi:8502029 /DB_XREF=UI-R-CA0-axi-h-11-0-UI.s1 /CLONE=UI-R-CA0-axi-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.56970.1 /TIER=ConsEnd /STK=2 /UG=Rn.56970 /UG_TITLE=ESTs BE109924 RGD1565959 RGD1565959 301230 NM_001106886 1392042_at AI146029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146029 /DB_XREF=gi:3667828 /DB_XREF=UI-R-BT0-qg-a-10-0-UI.s1 /CLONE=UI-R-BT0-qg-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.62511.1 /TIER=ConsEnd /STK=2 /UG=Rn.62511 /UG_TITLE=ESTs, Weakly similar to Z213_HUMAN ZINC FINGER PROTEIN 213 (PUTATIVE TRANSCRIPTION FACTOR CR53) (H.sapiens) AI146029 zinc finger protein 213 Znf213 287094 NM_001105764 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392043_at BE116206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116206 /DB_XREF=gi:8508311 /DB_XREF=UI-R-BS1-aya-f-05-0-UI.s1 /CLONE=UI-R-BS1-aya-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.38804.1 /TIER=ConsEnd /STK=2 /UG=Rn.38804 /UG_TITLE=ESTs BE116206 1392044_at BE117009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117009 /DB_XREF=gi:8509114 /DB_XREF=UI-R-BS1-ayl-g-07-0-UI.s1 /CLONE=UI-R-BS1-ayl-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.33761.1 /TIER=ConsEnd /STK=2 /UG=Rn.33761 /UG_TITLE=ESTs BE117009 1392045_at BE110277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110277 /DB_XREF=gi:8502382 /DB_XREF=UI-R-CA0-axl-b-03-0-UI.s1 /CLONE=UI-R-CA0-axl-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.51858.1 /TIER=ConsEnd /STK=2 /UG=Rn.51858 /UG_TITLE=ESTs BE110277 transmembrane protein 22 Tmem22 315957 NM_001012126 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1392046_at BE121124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121124 /DB_XREF=gi:8513229 /DB_XREF=UI-R-CA0-bau-d-01-0-UI.s1 /CLONE=UI-R-CA0-bau-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.53747.1 /TIER=ConsEnd /STK=2 /UG=Rn.53747 /UG_TITLE=ESTs BE121124 1392047_at BF391387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391387 /DB_XREF=gi:11376240 /DB_XREF=UI-R-CA1-bcr-g-06-0-UI.s1 /CLONE=UI-R-CA1-bcr-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.22146.2 /TIER=ConsEnd /STK=2 /UG=Rn.22146 /UG_TITLE=ESTs, Weakly similar to Slit1 (Rattus norvegicus) (R.norvegicus) BF391387 0004872 // receptor activity // inferred from electronic annotation 1392048_at BI288401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288401 /DB_XREF=gi:14944954 /DB_XREF=UI-R-DK0-cda-e-01-0-UI.s1 /CLONE=UI-R-DK0-cda-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.57374.1 /TIER=ConsEnd /STK=2 /UG=Rn.57374 /UG_TITLE=ESTs BI288401 1392049_at BF411767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411767 /DB_XREF=gi:11399756 /DB_XREF=UI-R-BT1-bmq-h-02-0-UI.s1 /CLONE=UI-R-BT1-bmq-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.61915.1 /TIER=ConsEnd /STK=2 /UG=Rn.61915 /UG_TITLE=ESTs BF411767 1392050_at BE119691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119691 /DB_XREF=gi:8511796 /DB_XREF=UI-R-CA0-baz-g-10-0-UI.s1 /CLONE=UI-R-CA0-baz-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.49181.1 /TIER=ConsEnd /STK=2 /UG=Rn.49181 /UG_TITLE=ESTs BE119691 1392051_at BE106315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106315 /DB_XREF=gi:8498417 /DB_XREF=UI-R-BO1-asm-e-06-0-UI.s1 /CLONE=UI-R-BO1-asm-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.62008.1 /TIER=ConsEnd /STK=2 /UG=Rn.62008 /UG_TITLE=ESTs BE106315 transmembrane protein 87B Tmem87b 362212 NM_001191854 /// XM_001081122 /// XM_342515 0016021 // integral to membrane // inferred from electronic annotation 1392052_at BM387566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387566 /DB_XREF=gi:18187619 /DB_XREF=UI-R-CN1-cjl-k-24-0-UI.s1 /CLONE=UI-R-CN1-cjl-k-24-0-UI /FEA=EST /CNT=2 /TID=Rn.12479.1 /TIER=ConsEnd /STK=2 /UG=Rn.12479 /UG_TITLE=ESTs BM387566 1392053_at AI639113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639113 /DB_XREF=gi:4700147 /DB_XREF=rx04924s /CLONE=rx04924 /FEA=EST /CNT=2 /TID=Rn.43194.1 /TIER=ConsEnd /STK=2 /UG=Rn.43194 /UG_TITLE=ESTs, Moderately similar to A57384 multimerin, endothelial cell, precursor (H.sapiens) AI639113 multimerin 1 Mmrn1 500152 XM_001065496 /// XM_001071128 0005576 // extracellular region // not recorded /// 0031093 // platelet alpha granule lumen // not recorded 1392054_at AW532414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532414 /DB_XREF=gi:7174828 /DB_XREF=UI-R-BS0-amo-b-09-0-UI.s1 /CLONE=UI-R-BS0-amo-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.65971.1 /TIER=ConsEnd /STK=2 /UG=Rn.65971 /UG_TITLE=ESTs AW532414 polybromo 1 Pbrm1 306254 XM_001059164 /// XM_240329 0001890 // placenta development // not recorded /// 0007507 // heart development // not recorded 0000776 // kinetochore // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0005515 // protein binding // not recorded 1392055_at BF397988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397988 /DB_XREF=gi:11382968 /DB_XREF=UI-R-BS2-bef-h-12-0-UI.s1 /CLONE=UI-R-BS2-bef-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.58947.1 /TIER=ConsEnd /STK=2 /UG=Rn.58947 /UG_TITLE=ESTs BF397988 1392056_at BF406061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406061 /DB_XREF=gi:11394036 /DB_XREF=UI-R-CA1-bje-f-14-0-UI.s1 /CLONE=UI-R-CA1-bje-f-14-0-UI /FEA=EST /CNT=2 /TID=Rn.61737.1 /TIER=ConsEnd /STK=2 /UG=Rn.61737 /UG_TITLE=ESTs BF406061 1392057_at AI639178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639178 /DB_XREF=gi:4700212 /DB_XREF=rx02881s /CLONE=rx02881 /FEA=EST /CNT=2 /TID=Rn.18674.1 /TIER=ConsEnd /STK=2 /UG=Rn.18674 /UG_TITLE=ESTs AI639178 similar to GLI-Kruppel family member GLI4 LOC500893 500893 NM_001029926 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1392058_at BF400044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400044 /DB_XREF=gi:11385019 /DB_XREF=UI-R-CA1-bia-e-11-0-UI.s1 /CLONE=UI-R-CA1-bia-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.65323.1 /TIER=ConsEnd /STK=2 /UG=Rn.65323 /UG_TITLE=ESTs BF400044 thioredoxin-like 1 Txnl1 140922 NM_080887 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0015036 // disulfide oxidoreductase activity // not recorded 1392059_at BG376428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376428 /DB_XREF=gi:13300900 /DB_XREF=UI-R-CU0-but-d-04-0-UI.s1 /CLONE=UI-R-CU0-but-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.27091.1 /TIER=ConsEnd /STK=2 /UG=Rn.27091 /UG_TITLE=ESTs, Weakly similar to AD15_RAT ADAM 15 precursor (A disintegrin and metalloproteinase domain 15) (Metalloproteinase-like, disintegrin-like, and cysteine-rich protein 15) (MDC-15) (Metalloprotease RGD disintegrin protein) (Metargidin) (CRII-7) (R.norvegicus) BG376428 1392060_at BF414374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414374 /DB_XREF=gi:11402363 /DB_XREF=UI-R-BJ2-bop-f-10-0-UI.s1 /CLONE=UI-R-BJ2-bop-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.52976.1 /TIER=ConsEnd /STK=2 /UG=Rn.52976 /UG_TITLE=ESTs BF414374 1392061_at BF397898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397898 /DB_XREF=gi:11382883 /DB_XREF=UI-R-BS2-bec-h-12-0-UI.s1 /CLONE=UI-R-BS2-bec-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.62657.1 /TIER=ConsEnd /STK=2 /UG=Rn.62657 /UG_TITLE=ESTs BF397898 minichromosome maintenance complex component 10 Mcm10 307126 NM_001107366 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded 0005515 // protein binding // not recorded 1392062_a_at BE097702 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097702 /DB_XREF=gi:8488633 /DB_XREF=UI-R-BO1-aqa-g-04-0-UI.s1 /CLONE=UI-R-BO1-aqa-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.24695.1 /TIER=ConsEnd /STK=2 /UG=Rn.24695 /UG_TITLE=ESTs, Weakly similar to C14C11.3.p (Caenorhabditis elegans) (C.elegans) BE097702 hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing Hexdc 100216475 NM_001142562 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation 1392063_at BF395773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395773 /DB_XREF=gi:11380744 /DB_XREF=UI-R-BT1-bkc-b-05-0-UI.s1 /CLONE=UI-R-BT1-bkc-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.46504.1 /TIER=ConsEnd /STK=2 /UG=Rn.46504 /UG_TITLE=ESTs BF395773 1392064_at BF400590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400590 /DB_XREF=gi:11388565 /DB_XREF=UI-R-CA0-bhd-b-09-0-UI.s1 /CLONE=UI-R-CA0-bhd-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.59590.1 /TIER=ConsEnd /STK=2 /UG=Rn.59590 /UG_TITLE=ESTs BF400590 distal-less homeobox 1 Dlx1 296500 NM_001100531 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // not recorded /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0021879 // forebrain neuron differentiation // inferred from electronic annotation /// 0021879 // forebrain neuron differentiation // not recorded /// 0021882 // regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment // inferred from electronic annotation /// 0021882 // regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment // not recorded /// 0021892 // cerebral cortex GABAergic interneuron differentiation // not recorded /// 0021892 // cerebral cortex GABAergic interneuron differentiation // inferred from electronic annotation /// 0021893 // cerebral cortex GABAergic interneuron fate commitment // inferred from electronic annotation /// 0021893 // cerebral cortex GABAergic interneuron fate commitment // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // not recorded /// 0048715 // negative regulation of oligodendrocyte differentiation // inferred from electronic annotation /// 0048715 // negative regulation of oligodendrocyte differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1392065_at BE116803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116803 /DB_XREF=gi:8508908 /DB_XREF=UI-R-BS1-ayf-d-11-0-UI.s1 /CLONE=UI-R-BS1-ayf-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.40610.1 /TIER=ConsEnd /STK=2 /UG=Rn.40610 /UG_TITLE=ESTs BE116803 kinesin family member 18A Kif18a 362186 NM_001137642 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007019 // microtubule depolymerization // not recorded /// 0007080 // mitotic metaphase plate congression // not recorded 0001726 // ruffle // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005828 // kinetochore microtubule // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0015630 // microtubule cytoskeleton // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0008574 // plus-end-directed microtubule motor activity // not recorded /// 0043130 // ubiquitin binding // not recorded /// 0051010 // microtubule plus-end binding // not recorded /// 0070463 // tubulin-dependent ATPase activity // not recorded 1392066_at BF391001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391001 /DB_XREF=gi:11375848 /DB_XREF=UI-R-CA1-bcf-a-09-0-UI.s1 /CLONE=UI-R-CA1-bcf-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.57356.1 /TIER=ConsEnd /STK=2 /UG=Rn.57356 /UG_TITLE=ESTs BF391001 Proline-rich transmembrane protein 4 Prrt4 500059 NM_001109226 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1392067_at BF413313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413313 /DB_XREF=gi:11401302 /DB_XREF=UI-R-BT1-bnw-d-07-0-UI.s1 /CLONE=UI-R-BT1-bnw-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.62304.1 /TIER=ConsEnd /STK=2 /UG=Rn.62304 /UG_TITLE=ESTs BF413313 similar to RIKEN cDNA C030014K22 gene RGD1564387 498269 XM_001075923 /// XM_002728030 1392068_at AA875224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875224 /DB_XREF=gi:4231103 /DB_XREF=UI-R-E0-cq-a-04-0-UI.s1 /CLONE=UI-R-E0-cq-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.34957.1 /TIER=ConsEnd /STK=2 /UG=Rn.34957 /UG_TITLE=ESTs AA875224 1392069_at BE095610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095610 /DB_XREF=gi:8486541 /DB_XREF=UI-R-BO1-apo-a-11-0-UI.s1 /CLONE=UI-R-BO1-apo-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.61637.1 /TIER=ConsEnd /STK=2 /UG=Rn.61637 /UG_TITLE=ESTs BE095610 1392070_at AI112117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112117 /DB_XREF=gi:3512066 /DB_XREF=UI-R-Y0-mo-h-02-0-UI.s1 /CLONE=UI-R-Y0-mo-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.52905.1 /TIER=ConsEnd /STK=2 /UG=Rn.52905 /UG_TITLE=ESTs AI112117 Lix1 homolog (mouse)-like Lix1l 499677 NM_001024303 1392071_at BF392945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392945 /DB_XREF=gi:11377805 /DB_XREF=UI-R-CA0-bfr-a-09-0-UI.s1 /CLONE=UI-R-CA0-bfr-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.57581.1 /TIER=ConsEnd /STK=2 /UG=Rn.57581 /UG_TITLE=ESTs BF392945 1392072_at BE108176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108176 /DB_XREF=gi:8500321 /DB_XREF=UI-R-BS1-ayw-g-04-0-UI.s1 /CLONE=UI-R-BS1-ayw-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.16675.1 /TIER=ConsEnd /STK=2 /UG=Rn.16675 /UG_TITLE=ESTs BE108176 1392073_at BE106470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106470 /DB_XREF=gi:8498572 /DB_XREF=UI-R-BO1-aso-d-02-0-UI.s1 /CLONE=UI-R-BO1-aso-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.68922.1 /TIER=ConsEnd /STK=2 /UG=Rn.68922 /UG_TITLE=ESTs BE106470 1392074_at AA926082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926082 /DB_XREF=gi:4237273 /DB_XREF=UI-R-A1-eu-b-03-0-UI.s1 /CLONE=UI-R-A1-eu-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.32719.1 /TIER=ConsEnd /STK=2 /UG=Rn.32719 /UG_TITLE=ESTs AA926082 similar to hypothetical protein FLJ21986 LOC500046 500046 XM_001059531 /// XM_001061323 /// XM_002729287 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded 1392075_at BE098246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098246 /DB_XREF=gi:8490109 /DB_XREF=UI-R-BJ1-asz-e-04-0-UI.s1 /CLONE=UI-R-BJ1-asz-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.49023.1 /TIER=ConsEnd /STK=2 /UG=Rn.49023 /UG_TITLE=ESTs BE098246 1392076_at BF393849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393849 /DB_XREF=gi:11378712 /DB_XREF=UI-R-CA0-bgv-f-08-0-UI.s1 /CLONE=UI-R-CA0-bgv-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.58146.1 /TIER=ConsEnd /STK=2 /UG=Rn.58146 /UG_TITLE=ESTs BF393849 1392077_at AW536022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW536022 /DB_XREF=gi:7178436 /DB_XREF=UI-R-BS0-aog-e-07-0-UI.s1 /CLONE=UI-R-BS0-aog-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.48596.1 /TIER=ConsEnd /STK=2 /UG=Rn.48596 /UG_TITLE=ESTs AW536022 metallophosphoesterase domain containing 2 Mpped2 362185 NM_198778 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392078_at BE108128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108128 /DB_XREF=gi:8500233 /DB_XREF=UI-R-CA0-axa-g-01-0-UI.s1 /CLONE=UI-R-CA0-axa-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.56466.1 /TIER=ConsEnd /STK=2 /UG=Rn.56466 /UG_TITLE=ESTs BE108128 1392079_at AW526264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526264 /DB_XREF=gi:7168649 /DB_XREF=UI-R-BO1-aja-a-09-0-UI.s1 /CLONE=UI-R-BO1-aja-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.46142.1 /TIER=ConsEnd /STK=2 /UG=Rn.46142 /UG_TITLE=ESTs AW526264 A kinase (PRKA) anchor protein 7 Akap7 361458 NM_001001801 0008104 // protein localization // traceable author statement /// 0010738 // regulation of protein kinase A signaling cascade // inferred from mutant phenotype /// 0016070 // RNA metabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016328 // lateral plasma membrane // not recorded /// 0016529 // sarcoplasmic reticulum // inferred from direct assay /// 0030315 // T-tubule // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0070382 // exocytic vesicle // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016208 // AMP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0032947 // protein complex scaffold // inferred from mutant phenotype /// 0034237 // protein kinase A regulatory subunit binding // inferred from direct assay /// 0051018 // protein kinase A binding // not recorded /// 0051018 // protein kinase A binding // traceable author statement /// 0051018 // protein kinase A binding // inferred from electronic annotation 1392080_at AA925824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925824 /DB_XREF=gi:4237015 /DB_XREF=UI-R-A1-et-a-10-0-UI.s1 /CLONE=UI-R-A1-et-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.15611.1 /TIER=ConsEnd /STK=2 /UG=Rn.15611 /UG_TITLE=ESTs AA925824 1392081_at BF386148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386148 /DB_XREF=gi:11370972 /DB_XREF=UI-R-CA1-bba-e-08-0-UI.s1 /CLONE=UI-R-CA1-bba-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.58377.1 /TIER=ConsEnd /STK=2 /UG=Rn.58377 /UG_TITLE=ESTs BF386148 1392082_a_at BI290548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290548 /DB_XREF=gi:14949220 /DB_XREF=UI-R-DK0-cgd-e-08-0-UI.s1 /CLONE=UI-R-DK0-cgd-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.8175.1 /TIER=ConsEnd /STK=2 /UG=Rn.8175 /UG_TITLE=ESTs, Moderately similar to T-CELL ANTIGEN CD7 PRECURSOR (M.musculus) BI290548 Cd7 molecule Cd7 303747 NM_001107074 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // not recorded 1392083_at BF415852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415852 /DB_XREF=gi:11403841 /DB_XREF=UI-R-CA1-bkf-g-01-0-UI.s1 /CLONE=UI-R-CA1-bkf-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.62837.1 /TIER=ConsEnd /STK=2 /UG=Rn.62837 /UG_TITLE=ESTs BF415852 exostoses (multiple) 1 Ext1 299907 NM_001130540 /// XM_001065900 /// XM_216920 0001503 // ossification // inferred from electronic annotation /// 0001503 // ossification // not recorded /// 0006024 // glycosaminoglycan biosynthetic process // inferred from electronic annotation /// 0006024 // glycosaminoglycan biosynthetic process // not recorded /// 0007369 // gastrulation // inferred from electronic annotation /// 0007369 // gastrulation // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007492 // endoderm development // inferred from electronic annotation /// 0007492 // endoderm development // not recorded /// 0007498 // mesoderm development // inferred from electronic annotation /// 0007498 // mesoderm development // not recorded /// 0015012 // heparan sulfate proteoglycan biosynthetic process // not recorded /// 0015012 // heparan sulfate proteoglycan biosynthetic process // inferred from electronic annotation /// 0015014 // heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process // inferred from electronic annotation /// 0015014 // heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process // not recorded /// 0021772 // olfactory bulb development // inferred from electronic annotation /// 0021772 // olfactory bulb development // not recorded /// 0033692 // cellular polysaccharide biosynthetic process // not recorded /// 0033692 // cellular polysaccharide biosynthetic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded /// 0031227 // intrinsic to endoplasmic reticulum membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008375 // acetylglucosaminyltransferase activity // not recorded /// 0008375 // acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0015020 // glucuronosyltransferase activity // not recorded /// 0015020 // glucuronosyltransferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // not recorded /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0050508 // glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0050508 // glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity // not recorded /// 0050509 // N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity // inferred from electronic annotation /// 0050509 // N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity // not recorded 1392084_at BE109244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109244 /DB_XREF=gi:8501349 /DB_XREF=UI-R-BS1-azd-e-11-0-UI.s1 /CLONE=UI-R-BS1-azd-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.12749.1 /TIER=ConsEnd /STK=2 /UG=Rn.12749 /UG_TITLE=ESTs BE109244 1392085_at AI008902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008902 /DB_XREF=gi:4132963 /DB_XREF=EST203353 /CLONE=REMBF13 /FEA=EST /CNT=2 /TID=Rn.23301.1 /TIER=ConsEnd /STK=2 /UG=Rn.23301 /UG_TITLE=ESTs AI008902 1392086_at BE115673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115673 /DB_XREF=gi:8507778 /DB_XREF=UI-R-BJ1-avy-f-04-0-UI.s1 /CLONE=UI-R-BJ1-avy-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.50836.1 /TIER=ConsEnd /STK=2 /UG=Rn.50836 /UG_TITLE=ESTs BE115673 Metastasis suppressor 1 Mtss1 362918 NM_001130563 0007015 // actin filament organization // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0030041 // actin filament polymerization // not recorded /// 0046847 // filopodium assembly // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0015629 // actin cytoskeleton // not recorded 0003779 // actin binding // not recorded /// 0003785 // actin monomer binding // not recorded /// 0005102 // receptor binding // not recorded /// 0008093 // cytoskeletal adaptor activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation 1392087_at AI227607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227607 /DB_XREF=gi:3811503 /DB_XREF=EST224311 /CLONE=RBRCJ32 /FEA=EST /CNT=2 /TID=Rn.21358.1 /TIER=ConsEnd /STK=2 /UG=Rn.21358 /UG_TITLE=ESTs AI227607 1392088_at BF399382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399382 /DB_XREF=gi:11384386 /DB_XREF=UI-R-CA1-bjb-m-16-0-UI.s1 /CLONE=UI-R-CA1-bjb-m-16-0-UI /FEA=EST /CNT=2 /TID=Rn.59360.1 /TIER=ConsEnd /STK=2 /UG=Rn.59360 /UG_TITLE=ESTs BF399382 1392089_at AW435314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435314 /DB_XREF=gi:6966621 /DB_XREF=UI-R-BJ0p-afc-b-01-0-UI.s1 /CLONE=UI-R-BJ0p-afc-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.45148.1 /TIER=ConsEnd /STK=2 /UG=Rn.45148 /UG_TITLE=ESTs, Weakly similar to A56088 host cell factor C1 precursor (H.sapiens) AW435314 host cell factor C2 Hcfc2 314704 NM_001008357 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1392090_at BG377322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377322 /DB_XREF=gi:13301794 /DB_XREF=UI-R-CU0-bvc-b-02-0-UI.s1 /CLONE=UI-R-CU0-bvc-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.28330.1 /TIER=ConsEnd /STK=2 /UG=Rn.28330 /UG_TITLE=ESTs, Weakly similar to S49162 ZG-21p protein - rat (R.norvegicus) BG377322 serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1 Serpinc1 304917 NM_001012027 0007584 // response to nutrient // inferred from direct assay /// 0050728 // negative regulation of inflammatory response // inferred from mutant phenotype 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0002020 // protease binding // inferred from electronic annotation /// 0002020 // protease binding // not recorded /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from direct assay /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1392091_at AI043891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043891 /DB_XREF=gi:3290626 /DB_XREF=UI-R-C0-jk-d-04-0-UI.s1 /CLONE=UI-R-C0-jk-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.21700.1 /TIER=ConsEnd /STK=2 /UG=Rn.21700 /UG_TITLE=ESTs AI043891 1392092_at AI101329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101329 /DB_XREF=gi:3706247 /DB_XREF=EST210618 /CLONE=RBRBL54 /FEA=EST /CNT=2 /TID=Rn.28066.1 /TIER=ConsEnd /STK=2 /UG=Rn.28066 /UG_TITLE=ESTs, Weakly similar to RB1A RAT RAS-RELATED PROTEIN RAB-1A (R.norvegicus) AI101329 RAB33A, member of RAS oncogene family Rab33a 317580 NM_001108257 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1392093_at BI299164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299164 /DB_XREF=gi:14975444 /DB_XREF=UI-R-CV2-chr-h-12-0-UI.s1 /CLONE=UI-R-CV2-chr-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.76775.1 /TIER=ConsEnd /STK=2 /UG=Rn.76775 /UG_TITLE=ESTs BI299164 1392094_at AW528613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528613 /DB_XREF=gi:7171027 /DB_XREF=UI-R-BO1-ajr-d-05-0-UI.s1 /CLONE=UI-R-BO1-ajr-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.40608.1 /TIER=ConsEnd /STK=2 /UG=Rn.40608 /UG_TITLE=ESTs AW528613 1392095_at BF410739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410739 /DB_XREF=gi:11398714 /DB_XREF=UI-R-CA0-bmc-d-03-0-UI.s1 /CLONE=UI-R-CA0-bmc-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.61774.1 /TIER=ConsEnd /STK=2 /UG=Rn.61774 /UG_TITLE=ESTs BF410739 1392096_at BE112055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112055 /DB_XREF=gi:8504125 /DB_XREF=UI-R-BJ1-ave-g-04-0-UI.s1 /CLONE=UI-R-BJ1-ave-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.13116.1 /TIER=ConsEnd /STK=2 /UG=Rn.13116 /UG_TITLE=ESTs BE112055 hypothetical LOC287935 RGD1308065 287935 NM_001077666 1392097_at BF402566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402566 /DB_XREF=gi:11390541 /DB_XREF=UI-R-CA0-bhr-h-07-0-UI.s1 /CLONE=UI-R-CA0-bhr-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.62692.1 /TIER=ConsEnd /STK=2 /UG=Rn.62692 /UG_TITLE=ESTs BF402566 1392098_at BF415835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415835 /DB_XREF=gi:11403824 /DB_XREF=UI-R-CA1-bkf-e-07-0-UI.s1 /CLONE=UI-R-CA1-bkf-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.62830.1 /TIER=ConsEnd /STK=2 /UG=Rn.62830 /UG_TITLE=ESTs BF415835 1392099_at AI549022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549022 /DB_XREF=gi:4466510 /DB_XREF=UI-R-C3-tv-e-12-0-UI.s1 /CLONE=UI-R-C3-tv-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.38400.1 /TIER=ConsEnd /STK=2 /UG=Rn.38400 /UG_TITLE=ESTs AI549022 1392100_at BF412475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412475 /DB_XREF=gi:11400464 /DB_XREF=UI-R-BT1-bnd-h-10-0-UI.s1 /CLONE=UI-R-BT1-bnd-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.50842.1 /TIER=ConsEnd /STK=2 /UG=Rn.50842 /UG_TITLE=ESTs BF412475 1392101_s_at AI175670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175670 /DB_XREF=gi:3726308 /DB_XREF=EST219230 /CLONE=ROVBD53 /FEA=EST /CNT=2 /TID=Rn.65892.1 /TIER=ConsEnd /STK=2 /UG=Rn.65892 /UG_TITLE=ESTs AI175670 1392102_at BE118959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118959 /DB_XREF=gi:8511064 /DB_XREF=UI-R-BS1-azw-g-07-0-UI.s1 /CLONE=UI-R-BS1-azw-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.34447.1 /TIER=ConsEnd /STK=2 /UG=Rn.34447 /UG_TITLE=ESTs BE118959 1392103_at BF397163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397163 /DB_XREF=gi:11382146 /DB_XREF=UI-R-BS2-bej-a-04-0-UI.s1 /CLONE=UI-R-BS2-bej-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.58771.1 /TIER=ConsEnd /STK=2 /UG=Rn.58771 /UG_TITLE=ESTs BF397163 1392104_at BF419583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419583 /DB_XREF=gi:11407572 /DB_XREF=UI-R-CA0-bpd-h-01-0-UI.s1 /CLONE=UI-R-CA0-bpd-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.61399.1 /TIER=ConsEnd /STK=2 /UG=Rn.61399 /UG_TITLE=ESTs BF419583 1392105_at AW527533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527533 /DB_XREF=gi:7169947 /DB_XREF=UI-R-BO1-ajv-d-04-0-UI.s1 /CLONE=UI-R-BO1-ajv-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.2877.1 /TIER=ConsEnd /STK=2 /UG=Rn.2877 /UG_TITLE=ESTs AW527533 1392106_at BF403067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403067 /DB_XREF=gi:11391042 /DB_XREF=UI-R-CA0-biy-d-18-0-UI.s1 /CLONE=UI-R-CA0-biy-d-18-0-UI /FEA=EST /CNT=2 /TID=Rn.59167.1 /TIER=ConsEnd /STK=2 /UG=Rn.59167 /UG_TITLE=ESTs BF403067 1392107_at BI302669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302669 /DB_XREF=gi:14978949 /DB_XREF=UI-R-DO0-cix-f-18-0-UI.s1 /CLONE=UI-R-DO0-cix-f-18-0-UI /FEA=EST /CNT=2 /TID=Rn.67287.1 /TIER=ConsEnd /STK=2 /UG=Rn.67287 /UG_TITLE=ESTs BI302669 strawberry notch homolog 2 (Drosophila) Sbno2 314619 NM_001108068 0002281 // macrophage activation involved in immune response // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0050727 // regulation of inflammatory response // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1392108_at BF390648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390648 /DB_XREF=gi:11375495 /DB_XREF=UI-R-CA1-bck-f-07-0-UI.s1 /CLONE=UI-R-CA1-bck-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.42829.1 /TIER=ConsEnd /STK=2 /UG=Rn.42829 /UG_TITLE=ESTs BF390648 1392109_at BG671422 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671422 /DB_XREF=gi:13893521 /DB_XREF=DRNBRA10 /CLONE=DRNBRA10 /FEA=EST /CNT=2 /TID=Rn.50849.1 /TIER=ConsEnd /STK=2 /UG=Rn.50849 /UG_TITLE=ESTs BG671422 1392110_at AA818585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818585 /DB_XREF=gi:4228377 /DB_XREF=UI-R-A0-bc-f-03-0-UI.s1 /CLONE=UI-R-A0-bc-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.16727.1 /TIER=ConsEnd /STK=2 /UG=Rn.16727 /UG_TITLE=ESTs AA818585 1392111_at AW435086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435086 /DB_XREF=gi:6966393 /DB_XREF=UI-R-BJ0p-afy-d-11-0-UI.s1 /CLONE=UI-R-BJ0p-afy-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.40227.1 /TIER=ConsEnd /STK=2 /UG=Rn.40227 /UG_TITLE=ESTs, Weakly similar to T22989 hypothetical protein F59C6.4 - Caenorhabditis elegans (C.elegans) AW435086 exosome component 3 Exosc3 313243 NM_001107936 0006364 // rRNA processing // not recorded 0000176 // nuclear exosome (RNase complex) // not recorded /// 0000177 // cytoplasmic exosome (RNase complex) // not recorded 0005515 // protein binding // not recorded 1392112_at BF397377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397377 /DB_XREF=gi:11382360 /DB_XREF=UI-R-BS2-bex-f-07-0-UI.s1 /CLONE=UI-R-BS2-bex-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.41815.1 /TIER=ConsEnd /STK=2 /UG=Rn.41815 /UG_TITLE=ESTs, Highly similar to PPT RAT PALMITOYL-PROTEIN THIOESTERASE PRECURSOR (R.norvegicus) BF397377 1392113_at BF419649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419649 /DB_XREF=gi:11407633 /DB_XREF=UI-R-CA0-bpe-e-11-0-UI.s1 /CLONE=UI-R-CA0-bpe-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.47608.1 /TIER=ConsEnd /STK=2 /UG=Rn.47608 /UG_TITLE=ESTs BF419649 1392114_at AI555339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555339 /DB_XREF=gi:4487702 /DB_XREF=UI-R-C2p-qw-d-06-0-UI.s1 /CLONE=UI-R-C2p-qw-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.39273.1 /TIER=ConsEnd /STK=2 /UG=Rn.39273 /UG_TITLE=ESTs AI555339 1392115_at BF401730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401730 /DB_XREF=gi:11389705 /DB_XREF=UI-R-CA0-bgo-a-01-0-UI.s1 /CLONE=UI-R-CA0-bgo-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.62057.1 /TIER=ConsEnd /STK=2 /UG=Rn.62057 /UG_TITLE=ESTs BF401730 1392116_at BE102137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102137 /DB_XREF=gi:8494236 /DB_XREF=UI-R-BT1-aqj-g-08-0-UI.s1 /CLONE=UI-R-BT1-aqj-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.53952.1 /TIER=ConsEnd /STK=2 /UG=Rn.53952 /UG_TITLE=ESTs BE102137 suppressor of IKK epsilon Sike 362007 NM_001012182 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded 1392117_at BF401109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401109 /DB_XREF=gi:11389084 /DB_XREF=UI-R-CA0-bgh-g-02-0-UI.s1 /CLONE=UI-R-CA0-bgh-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.59470.1 /TIER=ConsEnd /STK=2 /UG=Rn.59470 /UG_TITLE=ESTs BF401109 1392118_at BE099845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099845 /DB_XREF=gi:8491726 /DB_XREF=UI-R-BJ1-atq-h-04-0-UI.s1 /CLONE=UI-R-BJ1-atq-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.21939.1 /TIER=ConsEnd /STK=2 /UG=Rn.21939 /UG_TITLE=ESTs BE099845 1392119_at BF390340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390340 /DB_XREF=gi:11375186 /DB_XREF=UI-R-CA1-bcn-g-11-0-UI.s1 /CLONE=UI-R-CA1-bcn-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.27933.1 /TIER=ConsEnd /STK=2 /UG=Rn.27933 /UG_TITLE=ESTs BF390340 1392120_at AW526194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526194 /DB_XREF=gi:7168579 /DB_XREF=UI-R-BO1-aju-c-03-0-UI.s1 /CLONE=UI-R-BO1-aju-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.46113.1 /TIER=ConsEnd /STK=2 /UG=Rn.46113 /UG_TITLE=ESTs AW526194 1392121_at BF403868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403868 /DB_XREF=gi:11391843 /DB_XREF=UI-R-CA1-bix-n-09-0-UI.s1 /CLONE=UI-R-CA1-bix-n-09-0-UI /FEA=EST /CNT=2 /TID=Rn.60378.1 /TIER=ConsEnd /STK=2 /UG=Rn.60378 /UG_TITLE=ESTs BF403868 1392122_x_at BF559040 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559040 /DB_XREF=gi:11668770 /DB_XREF=UI-R-E0-cc-b-07-0-UI.r1 /CLONE=UI-R-E0-cc-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.26793.2 /TIER=ConsEnd /STK=2 /UG=Rn.26793 /UG_TITLE=ESTs, Moderately similar to I58377 LTG19 (H.sapiens) BF559040 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1 Mllt1 301119 NM_001106876 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1392123_at BE114497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114497 /DB_XREF=gi:8506602 /DB_XREF=UI-R-CA0-axm-h-04-0-UI.s1 /CLONE=UI-R-CA0-axm-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.75037.1 /TIER=ConsEnd /STK=2 /UG=Rn.75037 /UG_TITLE=ESTs BE114497 1392124_at BE108025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108025 /DB_XREF=gi:8500130 /DB_XREF=UI-R-CA0-awz-e-09-0-UI.s1 /CLONE=UI-R-CA0-awz-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.51388.1 /TIER=ConsEnd /STK=2 /UG=Rn.51388 /UG_TITLE=ESTs BE108025 1392125_at BF390331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390331 /DB_XREF=gi:11375177 /DB_XREF=UI-R-CA1-bcn-f-11-0-UI.s1 /CLONE=UI-R-CA1-bcn-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.57132.1 /TIER=ConsEnd /STK=2 /UG=Rn.57132 /UG_TITLE=ESTs BF390331 1392126_at BI278067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278067 /DB_XREF=gi:14924553 /DB_XREF=UI-R-CZ0-byc-h-10-0-UI.s1 /CLONE=UI-R-CZ0-byc-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.45088.1 /TIER=ConsEnd /STK=2 /UG=Rn.45088 /UG_TITLE=ESTs BI278067 1392127_at BF400081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400081 /DB_XREF=gi:11385092 /DB_XREF=UI-R-CA1-bjc-g-13-0-UI.s1 /CLONE=UI-R-CA1-bjc-g-13-0-UI /FEA=EST /CNT=2 /TID=Rn.47529.1 /TIER=ConsEnd /STK=2 /UG=Rn.47529 /UG_TITLE=ESTs BF400081 1392128_at BE104541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104541 /DB_XREF=gi:8496641 /DB_XREF=UI-R-BX0-arq-e-11-0-UI.s1 /CLONE=UI-R-BX0-arq-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.50647.1 /TIER=ConsEnd /STK=2 /UG=Rn.50647 /UG_TITLE=ESTs BE104541 ATPase family, AAA domain containing 5 Atad5 303348 XM_001080963 /// XM_002724526 /// XM_002727783 /// XM_220750 0005524 // ATP binding // inferred from electronic annotation 1392129_at AI013033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013033 /DB_XREF=gi:3226865 /DB_XREF=EST207484 /CLONE=RSPBB78 /FEA=EST /CNT=2 /TID=Rn.17917.1 /TIER=ConsEnd /STK=2 /UG=Rn.17917 /UG_TITLE=ESTs AI013033 1392130_at BF392511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392511 /DB_XREF=gi:11377368 /DB_XREF=UI-R-CA0-bfk-a-11-0-UI.s1 /CLONE=UI-R-CA0-bfk-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.57841.1 /TIER=ConsEnd /STK=2 /UG=Rn.57841 /UG_TITLE=ESTs BF392511 1392131_at AI012870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012870 /DB_XREF=gi:4133704 /DB_XREF=EST207321 /CLONE=RPLBC64 /FEA=EST /CNT=2 /TID=Rn.33237.1 /TIER=ConsEnd /STK=2 /UG=Rn.33237 /UG_TITLE=ESTs, Moderately similar to 40S RIBOSOMAL PROTEIN S2 (R.norvegicus) AI012870 1392132_at BE099899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099899 /DB_XREF=gi:8491782 /DB_XREF=UI-R-BJ1-atl-d-12-0-UI.s1 /CLONE=UI-R-BJ1-atl-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.49920.1 /TIER=ConsEnd /STK=2 /UG=Rn.49920 /UG_TITLE=ESTs BE099899 polymerase (RNA) II (DNA directed) polypeptide I Polr2i 292778 NM_001106244 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0008380 // RNA splicing // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005665 // DNA-directed RNA polymerase II, core complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392133_at AI502069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502069 /DB_XREF=gi:4399920 /DB_XREF=UI-R-C1-ka-f-07-0-UI.s1 /CLONE=UI-R-C1-ka-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.20902.1 /TIER=ConsEnd /STK=2 /UG=Rn.20902 /UG_TITLE=ESTs AI502069 Mitogen-activated protein kinase 1 interacting protein 1-like Mapk1ip1l 361028 NM_001108373 1392134_x_at BE099652 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099652 /DB_XREF=gi:8491531 /DB_XREF=UI-R-BJ1-atp-g-07-0-UI.s1 /CLONE=UI-R-BJ1-atp-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.40795.2 /TIER=ConsEnd /STK=2 /UG=Rn.40795 /UG_TITLE=ESTs BE099652 SLIT-ROBO Rho GTPase activating protein 2 Srgap2 360840 NM_001134958 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded 0005515 // protein binding // not recorded 1392135_at BF404125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404125 /DB_XREF=gi:11392100 /DB_XREF=UI-R-CA1-biw-f-02-0-UI.s1 /CLONE=UI-R-CA1-biw-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.52770.1 /TIER=ConsEnd /STK=2 /UG=Rn.52770 /UG_TITLE=ESTs BF404125 amiloride-sensitive cation channel 2, neuronal Accn2 79123 NM_024154 0001101 // response to acid // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0007613 // memory // not recorded /// 0008306 // associative learning // not recorded /// 0019233 // sensory perception of pain // non-traceable author statement /// 0034220 // ion transmembrane transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // not recorded 0005216 // ion channel activity // inferred from direct assay /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // not recorded /// 0005272 // sodium channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015280 // ligand-gated sodium channel activity // inferred from electronic annotation 1392136_at AI137808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137808 /DB_XREF=gi:3638585 /DB_XREF=UI-R-C0-hz-g-09-0-UI.s1 /CLONE=UI-R-C0-hz-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.24960.2 /TIER=ConsEnd /STK=2 /UG=Rn.24960 /UG_TITLE=ESTs AI137808 1392137_at BF404497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404497 /DB_XREF=gi:11392512 /DB_XREF=UI-R-CA1-big-f-03-0-UI.s1 /CLONE=UI-R-CA1-big-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.58583.1 /TIER=ConsEnd /STK=2 /UG=Rn.58583 /UG_TITLE=ESTs BF404497 1392138_at BF387018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387018 /DB_XREF=gi:11371842 /DB_XREF=UI-R-CA1-bbp-c-10-0-UI.s1 /CLONE=UI-R-CA1-bbp-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.59685.1 /TIER=ConsEnd /STK=2 /UG=Rn.59685 /UG_TITLE=ESTs BF387018 1392139_at BE105731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105731 /DB_XREF=gi:8497873 /DB_XREF=UI-R-BO1-asi-h-03-0-UI.s1 /CLONE=UI-R-BO1-asi-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.50821.1 /TIER=ConsEnd /STK=2 /UG=Rn.50821 /UG_TITLE=ESTs BE105731 1392140_at BF419584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419584 /DB_XREF=gi:11407573 /DB_XREF=UI-R-CA0-bpd-h-02-0-UI.s1 /CLONE=UI-R-CA0-bpd-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.63572.1 /TIER=ConsEnd /STK=2 /UG=Rn.63572 /UG_TITLE=ESTs BF419584 1392141_at AA818806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818806 /DB_XREF=gi:4227482 /DB_XREF=UI-R-A0-ar-c-02-0-UI.s1 /CLONE=UI-R-A0-ar-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.16539.1 /TIER=ConsEnd /STK=2 /UG=Rn.16539 /UG_TITLE=ESTs AA818806 1392142_at AI764196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764196 /DB_XREF=gi:5210131 /DB_XREF=UI-R-Y0-acw-a-05-0-UI.s1 /CLONE=UI-R-Y0-acw-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.41959.1 /TIER=ConsEnd /STK=2 /UG=Rn.41959 /UG_TITLE=ESTs AI764196 1392143_at AW529345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529345 /DB_XREF=gi:7171759 /DB_XREF=UI-R-BT1-akm-h-05-0-UI.s1 /CLONE=UI-R-BT1-akm-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.47171.1 /TIER=ConsEnd /STK=2 /UG=Rn.47171 /UG_TITLE=ESTs AW529345 1392144_at BF391491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391491 /DB_XREF=gi:11376385 /DB_XREF=UI-R-CA1-bcs-e-07-0-UI.s1 /CLONE=UI-R-CA1-bcs-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.57536.1 /TIER=ConsEnd /STK=2 /UG=Rn.57536 /UG_TITLE=ESTs BF391491 5'-nucleotidase domain containing 1 Nt5dc1 294456 NM_001106393 1392145_at BI281801 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281801 /DB_XREF=gi:14931917 /DB_XREF=UI-R-CU0s-cbs-f-11-0-UI.s1 /CLONE=UI-R-CU0s-cbs-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.55980.1 /TIER=ConsEnd /STK=2 /UG=Rn.55980 /UG_TITLE=ESTs BI281801 1392146_at BF418011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418011 /DB_XREF=gi:11405965 /DB_XREF=UI-R-CA0-bly-h-10-0-UI.s1 /CLONE=UI-R-CA0-bly-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.62900.1 /TIER=ConsEnd /STK=2 /UG=Rn.62900 /UG_TITLE=ESTs BF418011 1392147_at BG374840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374840 /DB_XREF=gi:13299312 /DB_XREF=UI-R-CV1-bss-b-02-0-UI.s1 /CLONE=UI-R-CV1-bss-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.73055.1 /TIER=ConsEnd /STK=2 /UG=Rn.73055 /UG_TITLE=ESTs BG374840 1392148_at BF391605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391605 /DB_XREF=gi:11376458 /DB_XREF=UI-R-CA1-bcw-d-03-0-UI.s1 /CLONE=UI-R-CA1-bcw-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.57571.1 /TIER=ConsEnd /STK=2 /UG=Rn.57571 /UG_TITLE=ESTs BF391605 1392149_at AA997766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997766 /DB_XREF=gi:4285130 /DB_XREF=UI-R-C0-hv-b-03-0-UI.s1 /CLONE=UI-R-C0-hv-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.79848.1 /TIER=ConsEnd /STK=2 /UG=Rn.79848 /UG_TITLE=ESTs AA997766 1392150_at BE106587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106587 /DB_XREF=gi:8498689 /DB_XREF=UI-R-BO1-asp-f-12-0-UI.s1 /CLONE=UI-R-BO1-asp-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.34264.1 /TIER=ConsEnd /STK=2 /UG=Rn.34264 /UG_TITLE=ESTs BE106587 1392151_at AW526257 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526257 /DB_XREF=gi:7168642 /DB_XREF=UI-R-BO1-aju-h-11-0-UI.s1 /CLONE=UI-R-BO1-aju-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.46139.1 /TIER=ConsEnd /STK=2 /UG=Rn.46139 /UG_TITLE=ESTs AW526257 1392152_at AW529516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529516 /DB_XREF=gi:7171930 /DB_XREF=UI-R-BT1-akl-b-10-0-UI.s1 /CLONE=UI-R-BT1-akl-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.47224.1 /TIER=ConsEnd /STK=2 /UG=Rn.47224 /UG_TITLE=ESTs AW529516 1392153_at BE107755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107755 /DB_XREF=gi:8499860 /DB_XREF=UI-R-CA0-aww-e-08-0-UI.s1 /CLONE=UI-R-CA0-aww-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.21946.1 /TIER=ConsEnd /STK=2 /UG=Rn.21946 /UG_TITLE=ESTs BE107755 1392154_at AI579418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI579418 /DB_XREF=gi:4563794 /DB_XREF=UI-R-AG0-wy-c-02-0-UI.s1 /CLONE=UI-R-AG0-wy-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.38301.1 /TIER=ConsEnd /STK=2 /UG=Rn.38301 /UG_TITLE=ESTs, Highly similar to S56145 BS69 protein (H.sapiens) AI579418 zinc finger, MYND domain containing 11 Zmynd11 291259 NM_203366 /// NM_203367 /// NM_203368 /// NM_203369 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392155_at AW523955 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523955 /DB_XREF=gi:7166340 /DB_XREF=UI-R-BO0-aie-h-08-0-UI.s1 /CLONE=UI-R-BO0-aie-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.49062.1 /TIER=ConsEnd /STK=2 /UG=Rn.49062 /UG_TITLE=ESTs AW523955 1392156_at BF388086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388086 /DB_XREF=gi:11372910 /DB_XREF=UI-R-CA1-bby-b-01-0-UI.s1 /CLONE=UI-R-CA1-bby-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.61776.1 /TIER=ConsEnd /STK=2 /UG=Rn.61776 /UG_TITLE=ESTs BF388086 1392157_at BE106313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106313 /DB_XREF=gi:8498415 /DB_XREF=UI-R-BO1-asm-e-04-0-UI.s1 /CLONE=UI-R-BO1-asm-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.35559.1 /TIER=ConsEnd /STK=2 /UG=Rn.35559 /UG_TITLE=ESTs BE106313 plexin A2 Plxna2 289392 NM_001105988 0001756 // somitogenesis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0021915 // neural tube development // not recorded /// 0021935 // granule cell precursor tangential migration // not recorded /// 0051642 // centrosome localization // not recorded /// 0060037 // pharyngeal system development // not recorded /// 0060174 // limb bud formation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0017154 // semaphorin receptor activity // not recorded 1392158_at BF402756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402756 /DB_XREF=gi:11390731 /DB_XREF=UI-R-CA0-bhk-c-09-0-UI.s1 /CLONE=UI-R-CA0-bhk-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.60125.1 /TIER=ConsEnd /STK=2 /UG=Rn.60125 /UG_TITLE=ESTs BF402756 POU class 3 homeobox 3 Pou3f3 192109 NM_138837 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 0001822 // kidney development // inferred from electronic annotation /// 0001822 // kidney development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // non-traceable author statement /// 0007399 // nervous system development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0010628 // positive regulation of gene expression // inferred from mutant phenotype /// 0010628 // positive regulation of gene expression // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0021799 // cerebral cortex radially oriented cell migration // inferred from electronic annotation /// 0021799 // cerebral cortex radially oriented cell migration // not recorded /// 0021869 // forebrain ventricular zone progenitor cell division // inferred from electronic annotation /// 0021869 // forebrain ventricular zone progenitor cell division // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0072218 // metanephric ascending thin limb development // inferred from sequence or structural similarity /// 0072227 // metanephric macula densa development // not recorded /// 0072227 // metanephric macula densa development // inferred from sequence or structural similarity /// 0072233 // metanephric thick ascending limb development // not recorded /// 0072233 // metanephric thick ascending limb development // inferred from sequence or structural similarity /// 0072236 // metanephric loop of Henle development // not recorded /// 0072236 // metanephric loop of Henle development // inferred from sequence or structural similarity /// 0072240 // metanephric DCT cell differentiation // not recorded /// 0072240 // metanephric DCT cell differentiation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // inferred from direct assay /// 0016563 // transcription activator activity // inferred from genetic interaction /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1392159_at AW530297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530297 /DB_XREF=gi:7172711 /DB_XREF=UI-R-BU0-amv-a-02-0-UI.s1 /CLONE=UI-R-BU0-amv-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.20317.1 /TIER=ConsEnd /STK=2 /UG=Rn.20317 /UG_TITLE=ESTs, Moderately similar to TGN3 RAT TRANS-GOLGI NETWORK INTEGRAL MEMBRANE PROTEIN TGN38 PRECURSOR (R.norvegicus) AW530297 1392160_at AI712792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712792 /DB_XREF=gi:5016592 /DB_XREF=UI-R-AF1-aax-e-11-0-UI.s1 /CLONE=UI-R-AF1-aax-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.44734.1 /TIER=ConsEnd /STK=2 /UG=Rn.44734 /UG_TITLE=ESTs AI712792 Similar to RIKEN cDNA 1700022C21 RGD1564067 499401 NM_001166303 1392161_at AI030731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030731 /DB_XREF=gi:3248557 /DB_XREF=UI-R-C0-jd-c-03-0-UI.s1 /CLONE=UI-R-C0-jd-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.18579.1 /TIER=ConsEnd /STK=2 /UG=Rn.18579 /UG_TITLE=ESTs AI030731 ATP synthase mitochondrial F1 complex assembly factor 1 Atpaf1 313510 NM_001107959 0006461 // protein complex assembly // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // not recorded 1392162_at BF391447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391447 /DB_XREF=gi:11376300 /DB_XREF=UI-R-CA1-bcx-e-10-0-UI.s1 /CLONE=UI-R-CA1-bcx-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.35360.1 /TIER=ConsEnd /STK=2 /UG=Rn.35360 /UG_TITLE=ESTs BF391447 Paraspeckle component 1 Pspc1 305910 NM_001025672 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0042382 // paraspeckles // inferred from electronic annotation /// 0042382 // paraspeckles // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392163_at BF391452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391452 /DB_XREF=gi:11376305 /DB_XREF=UI-R-CA1-bcx-f-03-0-UI.s1 /CLONE=UI-R-CA1-bcx-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.63147.1 /TIER=ConsEnd /STK=2 /UG=Rn.63147 /UG_TITLE=ESTs BF391452 1392164_at BG374714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374714 /DB_XREF=gi:13299186 /DB_XREF=UI-R-CV1-bsq-e-08-0-UI.s1 /CLONE=UI-R-CV1-bsq-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.66247.1 /TIER=ConsEnd /STK=2 /UG=Rn.66247 /UG_TITLE=ESTs BG374714 1392165_at AI071247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071247 /DB_XREF=gi:3397462 /DB_XREF=UI-R-C2-nb-e-01-0-UI.s1 /CLONE=UI-R-C2-nb-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.20482.1 /TIER=ConsEnd /STK=2 /UG=Rn.20482 /UG_TITLE=ESTs, Weakly similar to T27095 hypothetical protein Y51H1A.4 - Caenorhabditis elegans (C.elegans) AI071247 inhibitor of growth family, member 2 Ing2 290744 NM_001106083 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0016580 // Sin3 complex // inferred from electronic annotation /// 0016580 // Sin3 complex // not recorded /// 0016602 // CCAAT-binding factor complex // inferred from electronic annotation /// 0016602 // CCAAT-binding factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0032403 // protein complex binding // inferred from electronic annotation /// 0032403 // protein complex binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1392166_at BE099838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099838 /DB_XREF=gi:8491719 /DB_XREF=UI-R-BJ1-atq-g-09-0-UI.s1 /CLONE=UI-R-BJ1-atq-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.35726.1 /TIER=ConsEnd /STK=2 /UG=Rn.35726 /UG_TITLE=ESTs BE099838 1392167_at BE104899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104899 /DB_XREF=gi:8496999 /DB_XREF=UI-R-BX0-arw-a-05-0-UI.s1 /CLONE=UI-R-BX0-arw-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.50696.1 /TIER=ConsEnd /STK=2 /UG=Rn.50696 /UG_TITLE=ESTs BE104899 1392168_at BE102668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102668 /DB_XREF=gi:8494767 /DB_XREF=UI-R-BT1-aqs-f-08-0-UI.s1 /CLONE=UI-R-BT1-aqs-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.57668.1 /TIER=ConsEnd /STK=2 /UG=Rn.57668 /UG_TITLE=ESTs BE102668 vaccinia related kinase 1 Vrk1 362779 NM_001012194 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0046777 // protein autophosphorylation // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1392169_at BI294191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294191 /DB_XREF=gi:14956414 /DB_XREF=UI-R-DK0-cdv-f-12-0-UI.s1 /CLONE=UI-R-DK0-cdv-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.74843.1 /TIER=ConsEnd /STK=2 /UG=Rn.74843 /UG_TITLE=ESTs BI294191 1392170_at BE121336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121336 /DB_XREF=gi:8513441 /DB_XREF=UI-R-CA0-baw-g-03-0-UI.s1 /CLONE=UI-R-CA0-baw-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.46581.1 /TIER=ConsEnd /STK=2 /UG=Rn.46581 /UG_TITLE=ESTs, Moderately similar to T08730 hypothetical protein DKFZp566K023.1 (H.sapiens) BE121336 RWD domain containing 3 Rwdd3 65026 NM_001128152 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1392171_at AA945643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945643 /DB_XREF=gi:3105559 /DB_XREF=EST201142 /CLONE=RLUAR27 /FEA=EST /CNT=2 /TID=Rn.7885.1 /TIER=ConsEnd /STK=2 /UG=Rn.7885 /UG_TITLE=ESTs AA945643 chitinase 3-like 1 Chi3l1 89824 NM_053560 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006032 // chitin catabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004568 // chitinase activity // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation 1392172_at AI169984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169984 /DB_XREF=gi:3710024 /DB_XREF=EST215900 /CLONE=RLIAY17 /FEA=EST /CNT=2 /TID=Rn.16394.1 /TIER=ConsEnd /STK=2 /UG=Rn.16394 /UG_TITLE=ESTs AI169984 chemokine (C-C motif) ligand 9 Ccl9 360579 NM_001012357 0006955 // immune response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annotation 1392173_at BE115479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115479 /DB_XREF=gi:8507584 /DB_XREF=UI-R-BS1-axw-d-01-0-UI.s1 /CLONE=UI-R-BS1-axw-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.48936.1 /TIER=ConsEnd /STK=2 /UG=Rn.48936 /UG_TITLE=ESTs BE115479 zinc finger, CCHC domain containing 3 Zcchc3 690005 XM_001072887 /// XM_002726251 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392174_at BI288174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288174 /DB_XREF=gi:14944499 /DB_XREF=UI-R-DK0-cdc-g-06-0-UI.s1 /CLONE=UI-R-DK0-cdc-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.78863.1 /TIER=ConsEnd /STK=2 /UG=Rn.78863 /UG_TITLE=ESTs BI288174 carbohydrate (chondroitin 4) sulfotransferase 12 Chst12 304322 NM_001037775 0016051 // carbohydrate biosynthetic process // inferred from electronic annotation /// 0030206 // chondroitin sulfate biosynthetic process // not recorded /// 0030208 // dermatan sulfate biosynthetic process // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0047756 // chondroitin 4-sulfotransferase activity // not recorded 1392175_at AA956966 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956966 /DB_XREF=gi:4239440 /DB_XREF=UI-R-E1-fl-g-12-0-UI.s1 /CLONE=UI-R-E1-fl-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.23935.1 /TIER=ConsEnd /STK=2 /UG=Rn.23935 /UG_TITLE=ESTs AA956966 Nuclear receptor co-repressor 1 Ncor1 54299 XM_001077495 /// XM_577103 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0002361 // CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation // inferred from electronic annotation /// 0002361 // CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0014067 // negative regulation of phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014067 // negative regulation of phosphoinositide 3-kinase cascade // not recorded /// 0016481 // negative regulation of transcription // inferred from mutant phenotype /// 0016481 // negative regulation of transcription // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0021549 // cerebellum development // inferred from expression pattern /// 0021794 // thalamus development // inferred from electronic annotation /// 0021794 // thalamus development // not recorded /// 0031065 // positive regulation of histone deacetylation // inferred from electronic annotation /// 0031065 // positive regulation of histone deacetylation // not recorded /// 0032922 // circadian regulation of gene expression // inferred from electronic annotation /// 0032922 // circadian regulation of gene expression // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0051225 // spindle assembly // not recorded /// 0060318 // definitive erythrocyte differentiation // inferred from electronic annotation /// 0060318 // definitive erythrocyte differentiation // not recorded 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded /// 0017053 // transcriptional repressor complex // not recorded /// 0044428 // nuclear part // inferred from electronic annotation /// 0044428 // nuclear part // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0035033 // histone deacetylase regulator activity // inferred from electronic annotation /// 0035033 // histone deacetylase regulator activity // not recorded /// 0042826 // histone deacetylase binding // not recorded /// 0042974 // retinoic acid receptor binding // not recorded /// 0042974 // retinoic acid receptor binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // not recorded /// 0046966 // thyroid hormone receptor binding // inferred from electronic annotation /// 0046966 // thyroid hormone receptor binding // not recorded 1392176_at BE095647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095647 /DB_XREF=gi:8486578 /DB_XREF=UI-R-BO1-apo-e-07-0-UI.s1 /CLONE=UI-R-BO1-apo-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.49340.1 /TIER=ConsEnd /STK=2 /UG=Rn.49340 /UG_TITLE=ESTs BE095647 1392177_at BF400937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400937 /DB_XREF=gi:11388912 /DB_XREF=UI-R-CA0-bgg-f-08-0-UI.s1 /CLONE=UI-R-CA0-bgg-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.59678.1 /TIER=ConsEnd /STK=2 /UG=Rn.59678 /UG_TITLE=ESTs BF400937 1392178_at BE106509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106509 /DB_XREF=gi:8498611 /DB_XREF=UI-R-BO1-aso-g-12-0-UI.s1 /CLONE=UI-R-BO1-aso-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.50980.1 /TIER=ConsEnd /STK=2 /UG=Rn.50980 /UG_TITLE=ESTs, Weakly similar to GPBB MOUSE PLATELET GLYCOPROTEIN IB BETA CHAIN PRECURSOR (M.musculus) BE106509 SLIT and NTRK-like family, member 1 Slitrk1 306147 NM_001107283 0007409 // axonogenesis // not recorded 0005515 // protein binding // inferred from electronic annotation 1392179_at BI297081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297081 /DB_XREF=gi:14962140 /DB_XREF=UI-R-DK0-cdt-a-12-0-UI.s1 /CLONE=UI-R-DK0-cdt-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.52414.1 /TIER=ConsEnd /STK=2 /UG=Rn.52414 /UG_TITLE=ESTs BI297081 1392180_at AI705174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI705174 /DB_XREF=gi:4993074 /DB_XREF=UI-R-G0-uh-h-09-0-UI.s2 /CLONE=UI-R-G0-uh-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.22933.1 /TIER=ConsEnd /STK=2 /UG=Rn.22933 /UG_TITLE=ESTs AI705174 Sp1 transcription factor Sp1 24790 NM_012655 0001503 // ossification // inferred from electronic annotation /// 0001503 // ossification // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001829 // trophectodermal cell differentiation // inferred from electronic annotation /// 0001829 // trophectodermal cell differentiation // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0001892 // embryonic placenta development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0030219 // megakaryocyte differentiation // inferred from electronic annotation /// 0030219 // megakaryocyte differentiation // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0043353 // enucleate erythrocyte differentiation // inferred from electronic annotation /// 0043353 // enucleate erythrocyte differentiation // not recorded /// 0043923 // positive regulation by host of viral transcription // inferred from electronic annotation /// 0043923 // positive regulation by host of viral transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045817 // positive regulation of transcription from RNA polymerase II promoter, global // inferred from electronic annotation /// 0045817 // positive regulation of transcription from RNA polymerase II promoter, global // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048596 // embryonic camera-type eye morphogenesis // inferred from electronic annotation /// 0048596 // embryonic camera-type eye morphogenesis // not recorded /// 0048706 // embryonic skeletal system development // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // not recorded /// 0060136 // embryonic process involved in female pregnancy // inferred from electronic annotation /// 0060136 // embryonic process involved in female pregnancy // not recorded /// 0060216 // definitive hemopoiesis // inferred from electronic annotation /// 0060216 // definitive hemopoiesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0032993 // protein-DNA complex // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // not recorded /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0035035 // histone acetyltransferase binding // inferred from physical interaction /// 0035326 // enhancer binding // inferred from electronic annotation /// 0035326 // enhancer binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392181_at BE120481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120481 /DB_XREF=gi:8512586 /DB_XREF=UI-R-CA0-bat-a-01-0-UI.s1 /CLONE=UI-R-CA0-bat-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.50702.1 /TIER=ConsEnd /STK=2 /UG=Rn.50702 /UG_TITLE=ESTs BE120481 1392182_at BG380589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380589 /DB_XREF=gi:13305061 /DB_XREF=UI-R-CT0-btz-b-01-0-UI.s1 /CLONE=UI-R-CT0-btz-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.27814.1 /TIER=ConsEnd /STK=2 /UG=Rn.27814 /UG_TITLE=ESTs BG380589 1392183_at AI547389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547389 /DB_XREF=gi:4464877 /DB_XREF=UI-R-C3-tf-a-06-0-UI.s1 /CLONE=UI-R-C3-tf-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.41674.1 /TIER=ConsEnd /STK=2 /UG=Rn.41674 /UG_TITLE=ESTs AI547389 Homeobox C9 Hoxc9 368178 NM_001100907 /// XM_347335 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048706 // embryonic skeletal system development // not recorded 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1392184_at BI298049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298049 /DB_XREF=gi:14974329 /DB_XREF=UI-R-CV2-che-g-08-0-UI.s1 /CLONE=UI-R-CV2-che-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.76399.1 /TIER=ConsEnd /STK=2 /UG=Rn.76399 /UG_TITLE=ESTs BI298049 1392185_at BE096485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096485 /DB_XREF=gi:8487416 /DB_XREF=UI-R-BU0-apg-f-09-0-UI.s1 /CLONE=UI-R-BU0-apg-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.48949.1 /TIER=ConsEnd /STK=2 /UG=Rn.48949 /UG_TITLE=ESTs, Weakly similar to A45445 janusin precursor, long form - rat (R.norvegicus) BE096485 1392186_at BF386624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386624 /DB_XREF=gi:11371448 /DB_XREF=UI-R-CA1-bbf-f-04-0-UI.s1 /CLONE=UI-R-CA1-bbf-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.58698.1 /TIER=ConsEnd /STK=2 /UG=Rn.58698 /UG_TITLE=ESTs BF386624 1392187_at BG371676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371676 /DB_XREF=gi:13268213 /DB_XREF=UI-R-BJ2-bpi-e-02-0-UI.s1 /CLONE=UI-R-BJ2-bpi-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.27291.1 /TIER=ConsEnd /STK=2 /UG=Rn.27291 /UG_TITLE=ESTs BG371676 1392188_at AI713162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI713162 /DB_XREF=gi:5016956 /DB_XREF=UI-R-Y0-aba-h-06-0-UI.s1 /CLONE=UI-R-Y0-aba-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.41295.1 /TIER=ConsEnd /STK=2 /UG=Rn.41295 /UG_TITLE=ESTs AI713162 1392189_at BE105136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105136 /DB_XREF=gi:8497237 /DB_XREF=UI-R-BX0-asg-h-05-0-UI.s1 /CLONE=UI-R-BX0-asg-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.50719.1 /TIER=ConsEnd /STK=2 /UG=Rn.50719 /UG_TITLE=ESTs BE105136 Regulatory factor X, 4 (influences HLA class II expression) Rfx4 500818 XM_002726888 /// XM_576205 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0021516 // dorsal spinal cord development // not recorded /// 0021696 // cerebellar cortex morphogenesis // not recorded /// 0030900 // forebrain development // not recorded /// 0030901 // midbrain development // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded 1392190_at BF404047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404047 /DB_XREF=gi:11392022 /DB_XREF=UI-R-CA1-bjd-m-20-0-UI.s1 /CLONE=UI-R-CA1-bjd-m-20-0-UI /FEA=EST /CNT=2 /TID=Rn.60420.1 /TIER=ConsEnd /STK=2 /UG=Rn.60420 /UG_TITLE=ESTs BF404047 1392191_at BE329338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329338 /DB_XREF=gi:9203114 /DB_XREF=hq39f06.x1 /CLONE=IMAGE:3121763 /FEA=EST /CNT=2 /TID=Rn.54010.1 /TIER=ConsEnd /STK=2 /UG=Rn.54010 /UG_TITLE=ESTs BE329338 similar to gene trap ROSA b-geo 22 LOC691093 691093 NM_001109621 0007165 // signal transduction // inferred from electronic annotation /// 0007288 // sperm axoneme assembly // not recorded /// 0030534 // adult behavior // not recorded 0008603 // cAMP-dependent protein kinase regulator activity // inferred from electronic annotation 1392192_at BF413231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413231 /DB_XREF=gi:11401220 /DB_XREF=UI-R-BT1-bny-d-04-0-UI.s1 /CLONE=UI-R-BT1-bny-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.62283.1 /TIER=ConsEnd /STK=2 /UG=Rn.62283 /UG_TITLE=ESTs BF413231 1392193_at BE106074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106074 /DB_XREF=gi:8498176 /DB_XREF=UI-R-BO1-ask-f-04-0-UI.s1 /CLONE=UI-R-BO1-ask-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.40340.1 /TIER=ConsEnd /STK=2 /UG=Rn.40340 /UG_TITLE=ESTs BE106074 1392194_at BE101986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101986 /DB_XREF=gi:8494084 /DB_XREF=UI-R-BT1-aqi-h-11-0-UI.s1 /CLONE=UI-R-BT1-aqi-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.50177.1 /TIER=ConsEnd /STK=2 /UG=Rn.50177 /UG_TITLE=ESTs BE101986 1392195_at AI071202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071202 /DB_XREF=gi:3397417 /DB_XREF=UI-R-C2-my-b-10-0-UI.s1 /CLONE=UI-R-C2-my-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.20464.1 /TIER=ConsEnd /STK=2 /UG=Rn.20464 /UG_TITLE=ESTs AI071202 1392196_at BE120660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120660 /DB_XREF=gi:8512765 /DB_XREF=UI-R-CA0-bay-a-11-0-UI.s1 /CLONE=UI-R-CA0-bay-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.53628.1 /TIER=ConsEnd /STK=2 /UG=Rn.53628 /UG_TITLE=ESTs BE120660 1392197_at BF392518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392518 /DB_XREF=gi:11377375 /DB_XREF=UI-R-CA0-bfk-b-06-0-UI.s1 /CLONE=UI-R-CA0-bfk-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.61317.1 /TIER=ConsEnd /STK=2 /UG=Rn.61317 /UG_TITLE=ESTs BF392518 1392198_at BF398283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398283 /DB_XREF=gi:11383272 /DB_XREF=UI-R-BS2-bfb-f-09-0-UI.s1 /CLONE=UI-R-BS2-bfb-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.80428.1 /TIER=ConsEnd /STK=2 /UG=Rn.80428 /UG_TITLE=ESTs, Moderately similar to S21345 retrovirus-related leucine zipper protein p40 - rat retrotransposon (R.norvegicus) BF398283 1392199_at BF398981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398981 /DB_XREF=gi:11383985 /DB_XREF=UI-R-CA1-biz-g-16-0-UI.s1 /CLONE=UI-R-CA1-biz-g-16-0-UI /FEA=EST /CNT=2 /TID=Rn.59223.1 /TIER=ConsEnd /STK=2 /UG=Rn.59223 /UG_TITLE=ESTs BF398981 Ubiquitin protein ligase E3 component n-recognin 5 Ubr5 117060 NM_001191990 /// XM_001061308 /// XM_576252 0006464 // protein modification process // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0016567 // protein ubiquitination // traceable author statement /// 0050847 // progesterone receptor signaling pathway // inferred from electronic annotation /// 0050847 // progesterone receptor signaling pathway // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1392200_a_at AI045555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045555 /DB_XREF=gi:3292374 /DB_XREF=UI-R-C1-jz-g-04-0-UI.s2 /CLONE=UI-R-C1-jz-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.16254.1 /TIER=ConsEnd /STK=2 /UG=Rn.16254 /UG_TITLE=ESTs AI045555 family with sequence similarity 132, member A Fam132a 313774 NM_001108000 1392201_at BI288955 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288955 /DB_XREF=gi:14946035 /DB_XREF=UI-R-DK0-cdi-f-04-0-UI.s1 /CLONE=UI-R-DK0-cdi-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.50083.1 /TIER=ConsEnd /STK=2 /UG=Rn.50083 /UG_TITLE=ESTs BI288955 1392202_at BE120418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120418 /DB_XREF=gi:8512523 /DB_XREF=UI-R-CA0-bam-b-12-0-UI.s1 /CLONE=UI-R-CA0-bam-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.51108.1 /TIER=ConsEnd /STK=2 /UG=Rn.51108 /UG_TITLE=ESTs, Weakly similar to A56640 CDC4 repeat unit-containing protein - mouse (M.musculus) BE120418 1392203_at AI029834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029834 /DB_XREF=gi:4301302 /DB_XREF=UI-R-C0-jn-g-03-0-UI.s1 /CLONE=UI-R-C0-jn-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.18333.1 /TIER=ConsEnd /STK=2 /UG=Rn.18333 /UG_TITLE=ESTs AI029834 homeobox B2 LOC100361765 100361765 XM_002727806 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1392204_at AI763897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763897 /DB_XREF=gi:5209832 /DB_XREF=UI-R-Y0-act-d-03-0-UI.s1 /CLONE=UI-R-Y0-act-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.41591.1 /TIER=ConsEnd /STK=2 /UG=Rn.41591 /UG_TITLE=ESTs, Weakly similar to RENAL TRANSCRIPTION FACTOR KID-1 (R.norvegicus) AI763897 zinc finger protein 90 Zfp90 498945 NM_001025765 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392205_at BF412070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412070 /DB_XREF=gi:11400059 /DB_XREF=UI-R-BT1-bmy-c-04-0-UI.s1 /CLONE=UI-R-BT1-bmy-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.53336.1 /TIER=ConsEnd /STK=2 /UG=Rn.53336 /UG_TITLE=ESTs BF412070 1392206_at AI111510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111510 /DB_XREF=gi:3511552 /DB_XREF=UI-R-Y0-ma-b-07-0-UI.s1 /CLONE=UI-R-Y0-ma-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.26597.1 /TIER=ConsEnd /STK=2 /UG=Rn.26597 /UG_TITLE=ESTs AI111510 solute carrier family 35, member F4 Slc35f4 305865 XM_001063155 /// XM_224014 0016020 // membrane // inferred from electronic annotation 1392207_at BG373449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373449 /DB_XREF=gi:13269951 /DB_XREF=UI-R-CV1-bry-e-05-0-UI.s1 /CLONE=UI-R-CV1-bry-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.22920.1 /TIER=ConsEnd /STK=2 /UG=Rn.22920 /UG_TITLE=ESTs, Weakly similar to B0495.8.p (Caenorhabditis elegans) (C.elegans) BG373449 LUC7-like (S. cerevisiae) Luc7l 360503 NM_001024269 0009168 // purine ribonucleoside monophosphate biosynthetic process // inferred from electronic annotation 0019239 // deaminase activity // inferred from electronic annotation 1392208_at BF401148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401148 /DB_XREF=gi:11389123 /DB_XREF=UI-R-CA0-bgj-b-09-0-UI.s1 /CLONE=UI-R-CA0-bgj-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.59732.1 /TIER=ConsEnd /STK=2 /UG=Rn.59732 /UG_TITLE=ESTs BF401148 1392209_at AI639436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639436 /DB_XREF=gi:4700470 /DB_XREF=rx04453s /CLONE=rx04453 /FEA=EST /CNT=2 /TID=Rn.43518.1 /TIER=ConsEnd /STK=2 /UG=Rn.43518 /UG_TITLE=ESTs AI639436 glucosaminyl (N-acetyl) transferase 3, mucin type Gcnt3 286976 NM_173312 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003829 // beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0008109 // N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity // inferred from direct assay /// 0008109 // N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0008375 // acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1392210_at BF410487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410487 /DB_XREF=gi:11398462 /DB_XREF=UI-R-CA0-bme-c-03-0-UI.s1 /CLONE=UI-R-CA0-bme-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.61722.1 /TIER=ConsEnd /STK=2 /UG=Rn.61722 /UG_TITLE=ESTs BF410487 similar to mKIAA0319 protein RGD1307443 361244 NM_001197023 /// XM_001070349 /// XM_341527 1392211_at BF408070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408070 /DB_XREF=gi:11396045 /DB_XREF=UI-R-BJ2-bqz-d-03-0-UI.s1 /CLONE=UI-R-BJ2-bqz-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.32127.1 /TIER=ConsEnd /STK=2 /UG=Rn.32127 /UG_TITLE=ESTs BF408070 SEC24 family, member B (S. cerevisiae) Sec24b 295461 NM_001106474 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded 0030127 // COPII vesicle coat // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1392212_at AI715102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715102 /DB_XREF=gi:5032355 /DB_XREF=UI-R-Y0-abl-b-05-0-UI.s1 /CLONE=UI-R-Y0-abl-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.44946.1 /TIER=ConsEnd /STK=2 /UG=Rn.44946 /UG_TITLE=ESTs AI715102 1392213_at BM389936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389936 /DB_XREF=gi:18189989 /DB_XREF=UI-R-CN1-cji-p-02-0-UI.s1 /CLONE=UI-R-CN1-cji-p-02-0-UI /FEA=EST /CNT=2 /TID=Rn.74914.1 /TIER=ConsEnd /STK=2 /UG=Rn.74914 /UG_TITLE=ESTs BM389936 1392214_at AW532375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532375 /DB_XREF=gi:7174789 /DB_XREF=UI-R-BT1-akc-f-11-0-UI.s1 /CLONE=UI-R-BT1-akc-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.16070.1 /TIER=ConsEnd /STK=2 /UG=Rn.16070 /UG_TITLE=ESTs AW532375 1392215_at AW535067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535067 /DB_XREF=gi:7177481 /DB_XREF=UI-R-BS0-aoa-h-02-0-UI.s1 /CLONE=UI-R-BS0-aoa-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.48418.1 /TIER=ConsEnd /STK=2 /UG=Rn.48418 /UG_TITLE=ESTs AW535067 Eph receptor B1 Ephb1 24338 NM_001104528 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0021545 // cranial nerve development // inferred from electronic annotation /// 0021545 // cranial nerve development // not recorded /// 0021631 // optic nerve morphogenesis // inferred from electronic annotation /// 0021631 // optic nerve morphogenesis // not recorded /// 0021952 // central nervous system projection neuron axonogenesis // inferred from electronic annotation /// 0021952 // central nervous system projection neuron axonogenesis // not recorded /// 0031290 // retinal ganglion cell axon guidance // inferred from electronic annotation /// 0031290 // retinal ganglion cell axon guidance // not recorded /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from mutant phenotype /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005003 // ephrin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008046 // axon guidance receptor activity // inferred from electronic annotation /// 0008046 // axon guidance receptor activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1392216_at BF403731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403731 /DB_XREF=gi:11391706 /DB_XREF=UI-R-CA1-bjc-b-16-0-UI.s1 /CLONE=UI-R-CA1-bjc-b-16-0-UI /FEA=EST /CNT=2 /TID=Rn.60353.1 /TIER=ConsEnd /STK=2 /UG=Rn.60353 /UG_TITLE=ESTs BF403731 1392217_at AI172126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172126 /DB_XREF=gi:4134704 /DB_XREF=EST218121 /CLONE=RMUBV26 /FEA=EST /CNT=2 /TID=Rn.23063.1 /TIER=ConsEnd /STK=2 /UG=Rn.23063 /UG_TITLE=ESTs AI172126 1392218_at BF405138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405138 /DB_XREF=gi:11393113 /DB_XREF=UI-R-CA1-biq-b-10-0-UI.s1 /CLONE=UI-R-CA1-biq-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.60677.1 /TIER=ConsEnd /STK=2 /UG=Rn.60677 /UG_TITLE=ESTs BF405138 Similar to C14orf25 protein RGD1560556 366631 NM_001108983 1392219_at AI145523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145523 /DB_XREF=gi:3667322 /DB_XREF=UI-R-BT0-py-d-01-0-UI.s1 /CLONE=UI-R-BT0-py-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.33659.1 /TIER=ConsEnd /STK=2 /UG=Rn.33659 /UG_TITLE=ESTs AI145523 1392220_at AW532634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532634 /DB_XREF=gi:7175048 /DB_XREF=UI-R-BS0-amk-c-06-0-UI.s1 /CLONE=UI-R-BS0-amk-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.47987.1 /TIER=ConsEnd /STK=2 /UG=Rn.47987 /UG_TITLE=ESTs AW532634 1392221_at BE114215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114215 /DB_XREF=gi:8506320 /DB_XREF=UI-R-CA0-axo-d-10-0-UI.s1 /CLONE=UI-R-CA0-axo-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.52331.1 /TIER=ConsEnd /STK=2 /UG=Rn.52331 /UG_TITLE=ESTs BE114215 1392222_at AI058302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058302 /DB_XREF=gi:3332079 /DB_XREF=UI-R-C1-kl-e-09-0-UI.s1 /CLONE=UI-R-C1-kl-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.22544.1 /TIER=ConsEnd /STK=2 /UG=Rn.22544 /UG_TITLE=ESTs AI058302 1392223_at AW521110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521110 /DB_XREF=gi:7163488 /DB_XREF=UI-R-BO0-agp-c-12-0-UI.s1 /CLONE=UI-R-BO0-agp-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.31647.1 /TIER=ConsEnd /STK=2 /UG=Rn.31647 /UG_TITLE=ESTs AW521110 epsin 2 Epn2 60443 NM_001033914 /// NM_021852 0006897 // endocytosis // inferred from electronic annotation /// 0030100 // regulation of endocytosis // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0030128 // clathrin coat of endocytic vesicle // inferred from direct assay 0008289 // lipid binding // inferred from electronic annotation 1392224_at AI237779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237779 /DB_XREF=gi:4136357 /DB_XREF=EST234341 /CLONE=RPLDE84 /FEA=EST /CNT=2 /TID=Rn.34283.1 /TIER=ConsEnd /STK=2 /UG=Rn.34283 /UG_TITLE=ESTs, Weakly similar to A56039 GTPase-activating protein Gap1(m) - rat (R.norvegicus) AI237779 RAS p21 protein activator 3 Rasa3 29372 NM_031574 0007165 // signal transduction // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0031235 // intrinsic to internal side of plasma membrane // not recorded 0005096 // GTPase activator activity // inferred from electronic annotation /// 0015278 // calcium-release channel activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1392225_at BE120990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120990 /DB_XREF=gi:8513095 /DB_XREF=UI-R-CA0-baf-h-01-0-UI.s1 /CLONE=UI-R-CA0-baf-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.43312.1 /TIER=ConsEnd /STK=2 /UG=Rn.43312 /UG_TITLE=ESTs BE120990 1392226_at AI234999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234999 /DB_XREF=gi:3828505 /DB_XREF=EST231561 /CLONE=ROVCL35 /FEA=EST /CNT=2 /TID=Rn.25295.1 /TIER=ConsEnd /STK=2 /UG=Rn.25295 /UG_TITLE=ESTs AI234999 1392227_at BI288917 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288917 /DB_XREF=gi:14945961 /DB_XREF=UI-R-DK0-cdi-a-11-0-UI.s1 /CLONE=UI-R-DK0-cdi-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.26848.1 /TIER=ConsEnd /STK=2 /UG=Rn.26848 /UG_TITLE=ESTs BI288917 hypothetical LOC298018 LOC298018 298018 XM_002726530 /// XM_002729478 0006546 // glycine catabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005960 // glycine cleavage complex // inferred from electronic annotation 1392228_at BI294408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294408 /DB_XREF=gi:14956832 /DB_XREF=UI-R-DK0-cei-e-04-0-UI.s1 /CLONE=UI-R-DK0-cei-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.34345.3 /TIER=ConsEnd /STK=2 /UG=Rn.34345 /UG_TITLE=ESTs BI294408 1392229_at AW532790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532790 /DB_XREF=gi:7175204 /DB_XREF=UI-R-BU0-ams-c-05-0-UI.s1 /CLONE=UI-R-BU0-ams-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.48012.1 /TIER=ConsEnd /STK=2 /UG=Rn.48012 /UG_TITLE=ESTs AW532790 1392230_at BI287470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287470 /DB_XREF=gi:14943118 /DB_XREF=UI-R-CW0s-ccj-f-09-0-UI.s1 /CLONE=UI-R-CW0s-ccj-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.54302.1 /TIER=ConsEnd /STK=2 /UG=Rn.54302 /UG_TITLE=ESTs BI287470 Pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 Plekha1 361659 NM_001079894 0001553 // luteinization // not recorded /// 0007283 // spermatogenesis // not recorded /// 0008209 // androgen metabolic process // not recorded /// 0008210 // estrogen metabolic process // not recorded /// 0008585 // female gonad development // not recorded /// 0009791 // post-embryonic development // not recorded /// 0014065 // phosphoinositide 3-kinase cascade // not recorded /// 0031529 // ruffle organization // not recorded /// 0033327 // Leydig cell differentiation // not recorded /// 0035264 // multicellular organism growth // not recorded /// 0045184 // establishment of protein localization // not recorded /// 0048008 // platelet-derived growth factor receptor signaling pathway // not recorded /// 0048705 // skeletal system morphogenesis // not recorded /// 0050853 // B cell receptor signaling pathway // not recorded /// 0051898 // negative regulation of protein kinase B signaling cascade // not recorded /// 0060021 // palate development // not recorded /// 0060325 // face morphogenesis // not recorded /// 0070301 // cellular response to hydrogen peroxide // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0032587 // ruffle membrane // not recorded 0005515 // protein binding // not recorded /// 0030165 // PDZ domain binding // not recorded /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // not recorded 1392231_at BE102758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102758 /DB_XREF=gi:8494857 /DB_XREF=UI-R-BT1-aqp-g-12-0-UI.s1 /CLONE=UI-R-BT1-aqp-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.66460.1 /TIER=ConsEnd /STK=2 /UG=Rn.66460 /UG_TITLE=ESTs, Weakly similar to T34021 protein kinase SK2 - rat (R.norvegicus) BE102758 serine/threonine kinase 4 Stk4 311622 NM_001107800 0000902 // cell morphogenesis // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0035329 // hippo signaling cascade // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0046777 // protein autophosphorylation // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043539 // protein serine/threonine kinase activator activity // not recorded /// 0046983 // protein dimerization activity // not recorded 1392232_at AI030983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030983 /DB_XREF=gi:3248809 /DB_XREF=UI-R-C0-je-b-08-0-UI.s1 /CLONE=UI-R-C0-je-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.79702.1 /TIER=ConsEnd /STK=2 /UG=Rn.79702 /UG_TITLE=ESTs AI030983 similar to ribosomal protein S13 /// ribosomal protein S13 LOC683961 /// Rps13 161477 /// 683961 NM_130432 /// XM_001068232 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0033119 // negative regulation of RNA splicing // inferred from electronic annotation /// 0033119 // negative regulation of RNA splicing // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0022627 // cytosolic small ribosomal subunit // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003729 // mRNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392233_at AI556056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556056 /DB_XREF=gi:4488419 /DB_XREF=UI-R-C2p-re-d-11-0-UI.s1 /CLONE=UI-R-C2p-re-d-11-0-UI /FEA=EST /CNT=1 /TID=Rn.23490.2 /TIER=ConsEnd /STK=0 /UG=Rn.23490 /UG_TITLE=ESTs, Weakly similar to JC2054 complement regulatory protein, 5I2 antigen precursor - rat (R.norvegicus) AI556056 complement receptor 2 Cr2 289395 NM_001105989 0002430 // complement receptor mediated signaling pathway // not recorded /// 0007165 // signal transduction // not recorded /// 0042113 // B cell activation // not recorded 0009897 // external side of plasma membrane // not recorded 0004872 // receptor activity // not recorded /// 0004875 // complement receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1392234_at BF394183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394183 /DB_XREF=gi:11379047 /DB_XREF=UI-R-CA0-bhb-b-12-0-UI.s1 /CLONE=UI-R-CA0-bhb-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.40807.1 /TIER=ConsEnd /STK=2 /UG=Rn.40807 /UG_TITLE=ESTs BF394183 1392235_at BE105570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105570 /DB_XREF=gi:8497672 /DB_XREF=UI-R-BX0-ash-d-03-0-UI.s1 /CLONE=UI-R-BX0-ash-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.48874.1 /TIER=ConsEnd /STK=2 /UG=Rn.48874 /UG_TITLE=ESTs BE105570 1392236_at AI145441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145441 /DB_XREF=gi:3667240 /DB_XREF=UI-R-BT0-pv-c-09-0-UI.s1 /CLONE=UI-R-BT0-pv-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.53682.1 /TIER=ConsEnd /STK=2 /UG=Rn.53682 /UG_TITLE=ESTs AI145441 1392237_at AI235030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235030 /DB_XREF=gi:3828536 /DB_XREF=EST231592 /CLONE=ROVCL90 /FEA=EST /CNT=2 /TID=Rn.25243.1 /TIER=ConsEnd /STK=2 /UG=Rn.25243 /UG_TITLE=ESTs AI235030 1392238_at AI112241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112241 /DB_XREF=gi:3512190 /DB_XREF=UI-R-Y0-mh-f-07-0-UI.s1 /CLONE=UI-R-Y0-mh-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.26742.1 /TIER=ConsEnd /STK=2 /UG=Rn.26742 /UG_TITLE=ESTs AI112241 1392239_at BF386993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386993 /DB_XREF=gi:11371817 /DB_XREF=UI-R-CA1-bbp-a-06-0-UI.s1 /CLONE=UI-R-CA1-bbp-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.62463.1 /TIER=ConsEnd /STK=2 /UG=Rn.62463 /UG_TITLE=ESTs, Moderately similar to 60S RIBOSOMAL PROTEIN L9 (R.norvegicus) BF386993 1392240_at AI704093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI704093 /DB_XREF=gi:4991993 /DB_XREF=UI-R-AF0-yc-c-04-0-UI.s1 /CLONE=UI-R-AF0-yc-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.40797.1 /TIER=ConsEnd /STK=2 /UG=Rn.40797 /UG_TITLE=ESTs AI704093 1392241_at AW252634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252634 /DB_XREF=gi:6596225 /DB_XREF=UI-R-BJ0-add-g-12-0-UI.s1 /CLONE=UI-R-BJ0-add-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.44756.1 /TIER=ConsEnd /STK=2 /UG=Rn.44756 /UG_TITLE=ESTs, Moderately similar to 2A5E MOUSE SERINETHREONINE PROTEIN PHOSPHATASE 2A, 56 KDA REGULATORY SUBUNIT, EPSILON ISOFORM (M.musculus) AW252634 Protein phosphatase 2, regulatory subunit B', alpha isoform Ppp2r5a 312754 NM_001107891 0007165 // signal transduction // inferred from electronic annotation 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation /// 0000159 // protein phosphatase type 2A complex // not recorded /// 0005624 // membrane fraction // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008601 // protein phosphatase type 2A regulator activity // inferred from electronic annotation 1392242_at BF408410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408410 /DB_XREF=gi:11396385 /DB_XREF=UI-R-BJ2-brc-d-10-0-UI.s1 /CLONE=UI-R-BJ2-brc-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.61139.1 /TIER=ConsEnd /STK=2 /UG=Rn.61139 /UG_TITLE=ESTs BF408410 1392243_at BF407971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407971 /DB_XREF=gi:11395946 /DB_XREF=UI-R-BJ2-bqy-d-05-0-UI.s1 /CLONE=UI-R-BJ2-bqy-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.64257.1 /TIER=ConsEnd /STK=2 /UG=Rn.64257 /UG_TITLE=ESTs, Highly similar to JC7316 testicular zinc finger protein - mouse (M.musculus) BF407971 1392244_at AA818153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818153 /DB_XREF=gi:4198667 /DB_XREF=UI-R-A0-am-b-10-0-UI.s1 /CLONE=UI-R-A0-am-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.16466.1 /TIER=ConsEnd /STK=2 /UG=Rn.16466 /UG_TITLE=ESTs AA818153 1392245_at AI030231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030231 /DB_XREF=gi:3248057 /DB_XREF=UI-R-C0-it-a-03-0-UI.s1 /CLONE=UI-R-C0-it-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.21571.1 /TIER=ConsEnd /STK=2 /UG=Rn.21571 /UG_TITLE=ESTs AI030231 1392246_at AA900645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900645 /DB_XREF=gi:4233139 /DB_XREF=UI-R-E0-di-e-06-0-UI.s1 /CLONE=UI-R-E0-di-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.22417.2 /TIER=ConsEnd /STK=2 /UG=Rn.22417 /UG_TITLE=ESTs AA900645 1392247_at AA956305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956305 /DB_XREF=gi:4238699 /DB_XREF=UI-R-E1-fh-h-02-0-UI.s1 /CLONE=UI-R-E1-fh-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.23772.1 /TIER=ConsEnd /STK=2 /UG=Rn.23772 /UG_TITLE=ESTs AA956305 1392248_at AI145008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145008 /DB_XREF=gi:3666807 /DB_XREF=UI-R-BT0-pr-c-07-0-UI.s1 /CLONE=UI-R-BT0-pr-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.27767.1 /TIER=ConsEnd /STK=2 /UG=Rn.27767 /UG_TITLE=ESTs AI145008 1392249_at AI145746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145746 /DB_XREF=gi:3667545 /DB_XREF=UI-R-BT0-py-a-09-0-UI.s1 /CLONE=UI-R-BT0-py-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.28598.1 /TIER=ConsEnd /STK=2 /UG=Rn.28598 /UG_TITLE=ESTs AI145746 1392250_at AI145827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145827 /DB_XREF=gi:3667626 /DB_XREF=UI-R-BT0-pz-a-02-0-UI.s1 /CLONE=UI-R-BT0-pz-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.33671.1 /TIER=ConsEnd /STK=2 /UG=Rn.33671 /UG_TITLE=ESTs AI145827 Annexin A2 Anxa2 56611 NM_019905 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0007589 // body fluid secretion // inferred from mutant phenotype /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0030199 // collagen fibril organization // not recorded /// 0031340 // positive regulation of vesicle fusion // inferred from electronic annotation /// 0031340 // positive regulation of vesicle fusion // not recorded /// 0042730 // fibrinolysis // not recorded /// 0042730 // fibrinolysis // inferred from electronic annotation /// 0051917 // regulation of fibrinolysis // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042383 // sarcolemma // not recorded /// 0042470 // melanosome // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004859 // phospholipase inhibitor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // traceable author statement /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // not recorded /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // inferred from direct assay /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0017137 // Rab GTPase binding // inferred from physical interaction /// 0051015 // actin filament binding // traceable author statement 1392251_at BF397284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397284 /DB_XREF=gi:11382267 /DB_XREF=UI-R-BS2-bek-e-11-0-UI.s1 /CLONE=UI-R-BS2-bek-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.34549.1 /TIER=ConsEnd /STK=2 /UG=Rn.34549 /UG_TITLE=ESTs BF397284 1392252_at AA819893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819893 /DB_XREF=gi:4228145 /DB_XREF=UI-R-A0-aq-c-06-0-UI.s1 /CLONE=UI-R-A0-aq-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.37078.1 /TIER=ConsEnd /STK=2 /UG=Rn.37078 /UG_TITLE=ESTs AA819893 1392253_at AI071513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071513 /DB_XREF=gi:3397728 /DB_XREF=UI-R-C2-nc-h-04-0-UI.s1 /CLONE=UI-R-C2-nc-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.38754.1 /TIER=ConsEnd /STK=2 /UG=Rn.38754 /UG_TITLE=ESTs AI071513 1392254_at AI408043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408043 /DB_XREF=gi:4251547 /DB_XREF=EST236333 /CLONE=RPLDK47 /FEA=EST /CNT=2 /TID=Rn.43159.1 /TIER=ConsEnd /STK=2 /UG=Rn.43159 /UG_TITLE=ESTs AI408043 microtubule-associated protein 4 Map4 367171 NM_001024278 0007026 // negative regulation of microtubule depolymerization // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0005515 // protein binding // not recorded 1392255_at AI412578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412578 /DB_XREF=gi:4256082 /DB_XREF=EST240877 /CLONE=RBRDK07 /FEA=EST /CNT=2 /TID=Rn.43800.1 /TIER=ConsEnd /STK=2 /UG=Rn.43800 /UG_TITLE=ESTs AI412578 1392256_at AW253721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253721 /DB_XREF=gi:6597312 /DB_XREF=UI-R-BJ0-aes-e-09-0-UI.s1 /CLONE=UI-R-BJ0-aes-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.44696.1 /TIER=ConsEnd /STK=2 /UG=Rn.44696 /UG_TITLE=ESTs, Weakly similar to nidogen 2; entactin 2 (Mus musculus) (M.musculus) AW253721 similar to nidogen 2 protein /// similar to MIC2 like 1 /// similar to MIC2 like 1 /// hypothetical protein LOC681027 /// similar to MIC2 like 1 /// similar to MIC2 like 1 /// similar to MIC2 like 1 LOC302022 /// LOC679800 /// LOC680643 /// LOC681027 /// LOC688588 /// LOC691241 /// LOC691632 302022 /// 679800 /// 680643 /// 681027 /// 688588 /// 691241 /// 691632 NM_001127530 /// XM_001054523 /// XM_001058120 /// XM_001067521 /// XM_001077347 /// XM_001079095 /// XR_085937 /// XR_086355 0007160 // cell-matrix adhesion // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation 1392257_at AW253359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253359 /DB_XREF=gi:6596950 /DB_XREF=UI-R-BJ0-aen-a-05-0-UI.s1 /CLONE=UI-R-BJ0-aen-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.44723.1 /TIER=ConsEnd /STK=2 /UG=Rn.44723 /UG_TITLE=ESTs AW253359 MIS12, MIND kinetochore complex component, homolog (S. pombe) Mis12 501706 NM_001047972 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007059 // chromosome segregation // not recorded /// 0007067 // mitosis // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051382 // kinetochore assembly // inferred from electronic annotation /// 0051382 // kinetochore assembly // not recorded 0000444 // MIS12/MIND type complex // inferred from electronic annotation /// 0000444 // MIS12/MIND type complex // not recorded /// 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392258_at AW251218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251218 /DB_XREF=gi:6594809 /DB_XREF=UI-R-BJ0-adf-f-01-0-UI.s1 /CLONE=UI-R-BJ0-adf-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.44791.1 /TIER=ConsEnd /STK=2 /UG=Rn.44791 /UG_TITLE=ESTs, Moderately similar to A38194 desmoplakin I (H.sapiens) AW251218 1392259_at AI574925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI574925 /DB_XREF=gi:4544921 /DB_XREF=UI-R-G0-uf-g-05-0-UI.s1 /CLONE=UI-R-G0-uf-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.48385.1 /TIER=ConsEnd /STK=2 /UG=Rn.48385 /UG_TITLE=ESTs, Weakly similar to C34D4.14.p (Caenorhabditis elegans) (C.elegans) AI574925 HECT domain containing 1 Hectd1 362736 XM_001078686 /// XM_343060 0001843 // neural tube closure // not recorded /// 0006464 // protein modification process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392260_at BE109925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109925 /DB_XREF=gi:8502030 /DB_XREF=UI-R-CA0-axi-h-12-0-UI.s1 /CLONE=UI-R-CA0-axi-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.51771.1 /TIER=ConsEnd /STK=2 /UG=Rn.51771 /UG_TITLE=ESTs BE109925 1392261_at AW435438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435438 /DB_XREF=gi:6966745 /DB_XREF=UI-R-BJ0p-afu-e-03-0-UI.s1 /CLONE=UI-R-BJ0p-afu-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.54366.1 /TIER=ConsEnd /STK=2 /UG=Rn.54366 /UG_TITLE=ESTs AW435438 Similar to RIKEN cDNA A930038C07 RGD1311080 312401 XR_008378 /// XR_086231 1392262_at BF402235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402235 /DB_XREF=gi:11390210 /DB_XREF=UI-R-CA0-bhq-a-08-0-UI.s1 /CLONE=UI-R-CA0-bhq-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.60004.1 /TIER=ConsEnd /STK=2 /UG=Rn.60004 /UG_TITLE=ESTs BF402235 1392263_at AI579640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI579640 /DB_XREF=gi:4564016 /DB_XREF=UI-R-AD0-wd-h-12-0-UI.s2 /CLONE=UI-R-AD0-wd-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.63683.1 /TIER=ConsEnd /STK=2 /UG=Rn.63683 /UG_TITLE=ESTs AI579640 protein kinase, AMP-activated, gamma 2 non-catalytic subunit Prkag2 373545 NM_184051 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // not recorded /// 0006110 // regulation of glycolysis // inferred from electronic annotation /// 0006110 // regulation of glycolysis // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0010800 // positive regulation of peptidyl-threonine phosphorylation // inferred from electronic annotation /// 0010800 // positive regulation of peptidyl-threonine phosphorylation // not recorded /// 0019217 // regulation of fatty acid metabolic process // inferred from electronic annotation /// 0019217 // regulation of fatty acid metabolic process // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0046320 // regulation of fatty acid oxidation // not recorded /// 0050790 // regulation of catalytic activity // inferred from direct assay 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0031588 // AMP-activated protein kinase complex // inferred from direct assay /// 0031588 // AMP-activated protein kinase complex // inferred from mutant phenotype /// 0031588 // AMP-activated protein kinase complex // not recorded /// 0031588 // AMP-activated protein kinase complex // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004679 // AMP-activated protein kinase activity // inferred from direct assay /// 0004679 // AMP-activated protein kinase activity // inferred from mutant phenotype /// 0004862 // cAMP-dependent protein kinase inhibitor activity // inferred from electronic annotation /// 0004862 // cAMP-dependent protein kinase inhibitor activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008603 // cAMP-dependent protein kinase regulator activity // inferred from electronic annotation /// 0008603 // cAMP-dependent protein kinase regulator activity // not recorded /// 0008607 // phosphorylase kinase regulator activity // inferred from electronic annotation /// 0008607 // phosphorylase kinase regulator activity // not recorded /// 0016208 // AMP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0030295 // protein kinase activator activity // inferred from electronic annotation /// 0030295 // protein kinase activator activity // not recorded /// 0043531 // ADP binding // inferred from electronic annotation /// 0043531 // ADP binding // not recorded 1392264_s_at AI500951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI500951 /DB_XREF=gi:4398802 /DB_XREF=UI-R-C2p-rv-b-03-0-UI.s1 /CLONE=UI-R-C2p-rv-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.78030.1 /TIER=ConsEnd /STK=2 /UG=Rn.78030 /UG_TITLE=ESTs AI500951 serine (or cysteine) peptidase inhibitor, clade E, member 1 Serpine1 24617 NM_012620 0000302 // response to reactive oxygen species // inferred from expression pattern /// 0001300 // chronological cell aging // inferred from electronic annotation /// 0001300 // chronological cell aging // not recorded /// 0010469 // regulation of receptor activity // inferred from electronic annotation /// 0010469 // regulation of receptor activity // not recorded /// 0010757 // negative regulation of plasminogen activation // inferred from electronic annotation /// 0010757 // negative regulation of plasminogen activation // not recorded /// 0010951 // negative regulation of endopeptidase activity // inferred by curator /// 0010951 // negative regulation of endopeptidase activity // not recorded /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0014912 // negative regulation of smooth muscle cell migration // inferred from electronic annotation /// 0014912 // negative regulation of smooth muscle cell migration // not recorded /// 0030194 // positive regulation of blood coagulation // not recorded /// 0030194 // positive regulation of blood coagulation // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // not recorded /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0032757 // positive regulation of interleukin-8 production // inferred from electronic annotation /// 0032757 // positive regulation of interleukin-8 production // not recorded /// 0033629 // negative regulation of cell adhesion mediated by integrin // inferred from electronic annotation /// 0033629 // negative regulation of cell adhesion mediated by integrin // not recorded /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0035491 // positive regulation of leukotriene production involved in inflammatory response // inferred from electronic annotation /// 0035491 // positive regulation of leukotriene production involved in inflammatory response // not recorded /// 0042060 // wound healing // inferred from mutant phenotype /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042246 // tissue regeneration // inferred from expression pattern /// 0042593 // glucose homeostasis // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045765 // regulation of angiogenesis // not recorded /// 0045765 // regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0045861 // negative regulation of proteolysis // traceable author statement /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from mutant phenotype /// 0048260 // positive regulation of receptor-mediated endocytosis // not recorded /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from electronic annotation /// 0050729 // positive regulation of inflammatory response // not recorded /// 0050729 // positive regulation of inflammatory response // inferred from electronic annotation /// 0050820 // positive regulation of coagulation // inferred from mutant phenotype /// 0050829 // defense response to Gram-negative bacterium // inferred from electronic annotation /// 0050829 // defense response to Gram-negative bacterium // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051918 // negative regulation of fibrinolysis // inferred from electronic annotation /// 0051918 // negative regulation of fibrinolysis // not recorded /// 0055093 // response to hyperoxia // inferred from expression pattern /// 0061044 // negative regulation of vascular wound healing // inferred from electronic annotation /// 0061044 // negative regulation of vascular wound healing // not recorded /// 0070887 // cellular response to chemical stimulus // inferred from electronic annotation /// 0070887 // cellular response to chemical stimulus // not recorded /// 0071222 // cellular response to lipopolysaccharide // inferred from electronic annotation /// 0071222 // cellular response to lipopolysaccharide // not recorded /// 0071258 // cellular response to gravity // inferred from expression pattern /// 0090026 // positive regulation of monocyte chemotaxis // inferred from electronic annotation /// 0090026 // positive regulation of monocyte chemotaxis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0002020 // protease binding // inferred from electronic annotation /// 0002020 // protease binding // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // not recorded /// 0004867 // serine-type endopeptidase inhibitor activity // traceable author statement /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1392265_s_at AI548892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548892 /DB_XREF=gi:4466380 /DB_XREF=UI-R-C3-tp-a-11-0-UI.s1 /CLONE=UI-R-C3-tp-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.81324.1 /TIER=ConsEnd /STK=2 /UG=Rn.81324 /UG_TITLE=ESTs AI548892 matrix metallopeptidase 23 Mmp23 94339 NM_053606 0000003 // reproduction // not recorded /// 0000003 // reproduction // inferred from sequence or structural similarity /// 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // inferred from sequence or structural similarity 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // not recorded /// 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392266_at BI290114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290114 /DB_XREF=gi:14948382 /DB_XREF=UI-R-DK0-cfs-a-10-0-UI.s1 /CLONE=UI-R-DK0-cfs-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.50255.1 /TIER=ConsEnd /STK=2 /UG=Rn.50255 /UG_TITLE=ESTs BI290114 ring finger protein 190 Rnf190 303596 NM_001013973 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392267_at BE102449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102449 /DB_XREF=gi:8494548 /DB_XREF=UI-R-BT1-aqm-g-07-0-UI.s1 /CLONE=UI-R-BT1-aqm-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.50302.1 /TIER=ConsEnd /STK=2 /UG=Rn.50302 /UG_TITLE=ESTs, Moderately similar to A49013 tumor cell suppression protein HTS1 (H.sapiens) BE102449 DENN/MADD domain containing 2A Dennd2a 312257 XM_001070028 /// XM_002726347 /// XM_002729307 /// XM_231654 1392268_at AI535076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535076 /DB_XREF=gi:4449211 /DB_XREF=UI-R-C3-sx-f-05-0-UI.s1 /CLONE=UI-R-C3-sx-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.34736.1 /TIER=ConsEnd /STK=2 /UG=Rn.34736 /UG_TITLE=ESTs AI535076 1392269_at BE116983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116983 /DB_XREF=gi:8509088 /DB_XREF=UI-R-BS1-ayl-e-04-0-UI.s1 /CLONE=UI-R-BS1-ayl-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.58499.1 /TIER=ConsEnd /STK=2 /UG=Rn.58499 /UG_TITLE=ESTs, Highly similar to A56068 co-repressor protein - mouse (M.musculus) BE116983 SIN3 homolog A, transcription regulator (yeast) Sin3a 363067 NM_001108761 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0006260 // DNA replication // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007568 // aging // inferred from direct assay /// 0010243 // response to organic nitrogen // inferred from direct assay /// 0034613 // cellular protein localization // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043619 // regulation of transcription from RNA polymerase II promoter in response to oxidative stress // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0051329 // interphase of mitotic cell cycle // not recorded 0000776 // kinetochore // not recorded /// 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016580 // Sin3 complex // not recorded /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0032403 // protein complex binding // inferred from direct assay 1392270_at BE104334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104334 /DB_XREF=gi:8496434 /DB_XREF=UI-R-BX0-arn-f-01-0-UI.s1 /CLONE=UI-R-BX0-arn-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.58690.1 /TIER=ConsEnd /STK=2 /UG=Rn.58690 /UG_TITLE=ESTs BE104334 1392271_at AW252290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252290 /DB_XREF=gi:6595846 /DB_XREF=UI-R-BJ0-adt-a-06-0-UI.s1 /CLONE=UI-R-BJ0-adt-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.40816.1 /TIER=ConsEnd /STK=2 /UG=Rn.40816 /UG_TITLE=ESTs, Highly similar to retinoic acid X receptor gamma-1 (R.norvegicus) AW252290 retinoid X receptor gamma Rxrg 83574 NM_031765 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007422 // peripheral nervous system development // inferred from expression pattern /// 0007507 // heart development // inferred from expression pattern /// 0007519 // skeletal muscle tissue development // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030182 // neuron differentiation // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048384 // retinoic acid receptor signaling pathway // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0004886 // retinoid-X receptor activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392272_at BE110080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110080 /DB_XREF=gi:8502185 /DB_XREF=UI-R-CA0-axj-g-10-0-UI.s1 /CLONE=UI-R-CA0-axj-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.51812.1 /TIER=ConsEnd /STK=2 /UG=Rn.51812 /UG_TITLE=ESTs BE110080 Hypothetical protein LOC680919 LOC680919 680919 XM_001059449 1392273_at BF402258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402258 /DB_XREF=gi:11390233 /DB_XREF=UI-R-CA0-bhq-d-01-0-UI.s1 /CLONE=UI-R-CA0-bhq-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.60011.1 /TIER=ConsEnd /STK=2 /UG=Rn.60011 /UG_TITLE=ESTs BF402258 leucine zipper-EF-hand containing transmembrane protein 2 Letm2 361169 NM_001012158 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1392274_at BE118653 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118653 /DB_XREF=gi:8510758 /DB_XREF=UI-R-BS1-azr-c-01-0-UI.s1 /CLONE=UI-R-BS1-azr-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.18332.1 /TIER=ConsEnd /STK=2 /UG=Rn.18332 /UG_TITLE=ESTs BE118653 1392275_at BF390537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390537 /DB_XREF=gi:11375383 /DB_XREF=UI-R-CA1-bcc-b-12-0-UI.s1 /CLONE=UI-R-CA1-bcc-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.57184.1 /TIER=ConsEnd /STK=2 /UG=Rn.57184 /UG_TITLE=ESTs, Weakly similar to CCG2 MOUSE VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA-2 SUBUNIT (M.musculus) BF390537 1392276_at AI576623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576623 /DB_XREF=gi:4560999 /DB_XREF=UI-R-Y0-vd-f-06-0-UI.s1 /CLONE=UI-R-Y0-vd-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.41076.1 /TIER=ConsEnd /STK=2 /UG=Rn.41076 /UG_TITLE=ESTs, Weakly similar to T00415 hypothetical protein H_248O15.1 (H.sapiens) AI576623 similar to 2510002A14Rik protein RGD1311309 364144 XM_002724959 /// XM_002724960 /// XM_002728099 /// XM_002728100 0005488 // binding // inferred from electronic annotation 1392277_at BI303053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303053 /DB_XREF=gi:14979333 /DB_XREF=UI-R-DO0-ciy-l-18-0-UI.s1 /CLONE=UI-R-DO0-ciy-l-18-0-UI /FEA=EST /CNT=2 /TID=Rn.77424.1 /TIER=ConsEnd /STK=2 /UG=Rn.77424 /UG_TITLE=ESTs BI303053 Rho guanine nucleotide exchange factor (GEF) 12 Arhgef12 367072 NM_001013246 0006915 // apoptosis // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0001664 // G-protein-coupled receptor binding // inferred from electronic annotation /// 0001664 // G-protein-coupled receptor binding // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392278_at BF418109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418109 /DB_XREF=gi:11406098 /DB_XREF=UI-R-CA0-blz-f-01-0-UI.s1 /CLONE=UI-R-CA0-blz-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.62768.1 /TIER=ConsEnd /STK=2 /UG=Rn.62768 /UG_TITLE=ESTs BF418109 1392279_at BI291154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291154 /DB_XREF=gi:14950428 /DB_XREF=UI-R-DK0-cgh-c-02-0-UI.s1 /CLONE=UI-R-DK0-cgh-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.14987.1 /TIER=ConsEnd /STK=2 /UG=Rn.14987 /UG_TITLE=ESTs, Moderately similar to DYI3_HUMAN DYNEIN INTERMEDIATE CHAIN 1, AXONEMAL (AXONEMAL DYNEIN INTERMEDIATE CHAIN 1) (H.sapiens) BI291154 dynein, axonemal, intermediate chain 1 Dnai1 500442 NM_001024342 0005874 // microtubule // inferred from electronic annotation /// 0030286 // dynein complex // inferred from electronic annotation 0003774 // motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1392280_at AW526982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526982 /DB_XREF=gi:7169396 /DB_XREF=UI-R-BO1-ajg-b-12-0-UI.s1 /CLONE=UI-R-BO1-ajg-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.46387.1 /TIER=ConsEnd /STK=2 /UG=Rn.46387 /UG_TITLE=ESTs, Moderately similar to A Chain A, Crystal Structure Of P681h Mutant Of Tir Domain Of Human Tlr2 (H.sapiens) AW526982 toll-like receptor 2 Tlr2 310553 NM_198769 0001666 // response to hypoxia // inferred from expression pattern /// 0002224 // toll-like receptor signaling pathway // inferred from direct assay /// 0002238 // response to molecule of fungal origin // inferred from electronic annotation /// 0002238 // response to molecule of fungal origin // not recorded /// 0002282 // microglial cell activation involved in immune response // inferred from direct assay /// 0002687 // positive regulation of leukocyte migration // inferred from electronic annotation /// 0002687 // positive regulation of leukocyte migration // not recorded /// 0002752 // cell surface pattern recognition receptor signaling pathway // inferred from electronic annotation /// 0002752 // cell surface pattern recognition receptor signaling pathway // not recorded /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // inferred from electronic annotation /// 0002755 // MyD88-dependent toll-like receptor signaling pathway // not recorded /// 0006955 // immune response // non-traceable author statement /// 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded /// 0007252 // I-kappaB phosphorylation // inferred from electronic annotation /// 0007252 // I-kappaB phosphorylation // not recorded /// 0009617 // response to bacterium // not recorded /// 0009617 // response to bacterium // inferred from electronic annotation /// 0009636 // response to toxin // inferred from expression pattern /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0032493 // response to bacterial lipoprotein // inferred from direct assay /// 0032494 // response to peptidoglycan // inferred from electronic annotation /// 0032494 // response to peptidoglycan // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0032695 // negative regulation of interleukin-12 production // not recorded /// 0032700 // negative regulation of interleukin-17 production // inferred from electronic annotation /// 0032700 // negative regulation of interleukin-17 production // not recorded /// 0032722 // positive regulation of chemokine production // inferred from electronic annotation /// 0032722 // positive regulation of chemokine production // not recorded /// 0032728 // positive regulation of interferon-beta production // inferred from electronic annotation /// 0032728 // positive regulation of interferon-beta production // not recorded /// 0032735 // positive regulation of interleukin-12 production // inferred from electronic annotation /// 0032735 // positive regulation of interleukin-12 production // not recorded /// 0032741 // positive regulation of interleukin-18 production // inferred from electronic annotation /// 0032741 // positive regulation of interleukin-18 production // not recorded /// 0032755 // positive regulation of interleukin-6 production // inferred from electronic annotation /// 0032755 // positive regulation of interleukin-6 production // not recorded /// 0032757 // positive regulation of interleukin-8 production // inferred from electronic annotation /// 0032757 // positive regulation of interleukin-8 production // not recorded /// 0032760 // positive regulation of tumor necrosis factor production // inferred from electronic annotation /// 0032760 // positive regulation of tumor necrosis factor production // not recorded /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0034123 // positive regulation of toll-like receptor signaling pathway // inferred from electronic annotation /// 0034123 // positive regulation of toll-like receptor signaling pathway // not recorded /// 0042346 // positive regulation of NF-kappaB import into nucleus // inferred from electronic annotation /// 0042346 // positive regulation of NF-kappaB import into nucleus // not recorded /// 0042495 // detection of triacyl bacterial lipopeptide // inferred from electronic annotation /// 0042495 // detection of triacyl bacterial lipopeptide // not recorded /// 0042496 // detection of diacyl bacterial lipopeptide // inferred from electronic annotation /// 0042496 // detection of diacyl bacterial lipopeptide // not recorded /// 0042535 // positive regulation of tumor necrosis factor biosynthetic process // inferred from electronic annotation /// 0042535 // positive regulation of tumor necrosis factor biosynthetic process // not recorded /// 0042742 // defense response to bacterium // inferred from direct assay /// 0042892 // chloramphenicol transport // inferred from electronic annotation /// 0042892 // chloramphenicol transport // not recorded /// 0044130 // negative regulation of growth of symbiont in host // inferred from electronic annotation /// 0044130 // negative regulation of growth of symbiont in host // not recorded /// 0045087 // innate immune response // inferred from electronic annotation /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045429 // positive regulation of nitric oxide biosynthetic process // not recorded /// 0046209 // nitric oxide metabolic process // inferred from direct assay /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051770 // positive regulation of nitric-oxide synthase biosynthetic process // inferred from electronic annotation /// 0051770 // positive regulation of nitric-oxide synthase biosynthetic process // not recorded /// 0052033 // pathogen-associated molecular pattern dependent induction by symbiont of host innate immunity // inferred from direct assay /// 0052063 // induction by symbiont of defense-related host nitric oxide production // inferred from electronic annotation /// 0052063 // induction by symbiont of defense-related host nitric oxide production // not recorded /// 0060907 // positive regulation of macrophage cytokine production // inferred from electronic annotation /// 0060907 // positive regulation of macrophage cytokine production // not recorded /// 0070542 // response to fatty acid // inferred from direct assay /// 0071221 // cellular response to bacterial lipopeptide // not recorded /// 0071223 // cellular response to lipoteichoic acid // inferred from electronic annotation /// 0071223 // cellular response to lipoteichoic acid // not recorded /// 0071224 // cellular response to peptidoglycan // not recorded /// 0071726 // cellular response to diacyl bacterial lipopeptide // inferred from electronic annotation /// 0071726 // cellular response to diacyl bacterial lipopeptide // not recorded /// 0071727 // cellular response to triacyl bacterial lipopeptide // inferred from electronic annotation /// 0071727 // cellular response to triacyl bacterial lipopeptide // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031224 // intrinsic to membrane // inferred from electronic annotation /// 0035354 // Toll-like receptor 1-Toll-like receptor 2 protein complex // inferred from electronic annotation /// 0035354 // Toll-like receptor 1-Toll-like receptor 2 protein complex // not recorded /// 0035355 // Toll-like receptor 2-Toll-like receptor 6 protein complex // inferred from electronic annotation /// 0035355 // Toll-like receptor 2-Toll-like receptor 6 protein complex // not recorded 0004872 // receptor activity // not recorded /// 0004872 // receptor activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008329 // pattern recognition receptor activity // inferred from electronic annotation /// 0008329 // pattern recognition receptor activity // not recorded /// 0042497 // triacyl lipopeptide binding // inferred from electronic annotation /// 0042497 // triacyl lipopeptide binding // not recorded /// 0042498 // diacyl lipopeptide binding // inferred from electronic annotation /// 0042498 // diacyl lipopeptide binding // not recorded /// 0042834 // peptidoglycan binding // inferred from electronic annotation /// 0042834 // peptidoglycan binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0051637 // Gram-positive bacterial cell surface binding // inferred from electronic annotation /// 0051637 // Gram-positive bacterial cell surface binding // not recorded /// 0070891 // lipoteichoic acid binding // inferred from electronic annotation /// 0070891 // lipoteichoic acid binding // not recorded 1392281_at BF394581 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394581 /DB_XREF=gi:11379459 /DB_XREF=UI-R-CA0-bfx-e-02-0-UI.s1 /CLONE=UI-R-CA0-bfx-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.50317.1 /TIER=ConsEnd /STK=2 /UG=Rn.50317 /UG_TITLE=ESTs BF394581 1392282_at BE114642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114642 /DB_XREF=gi:8506747 /DB_XREF=UI-R-BJ1-awn-e-07-0-UI.s1 /CLONE=UI-R-BJ1-awn-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.56327.1 /TIER=ConsEnd /STK=2 /UG=Rn.56327 /UG_TITLE=ESTs BE114642 1392283_at BI288834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288834 /DB_XREF=gi:14945799 /DB_XREF=UI-R-DK0-cdf-d-10-0-UI.s1 /CLONE=UI-R-DK0-cdf-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.69225.1 /TIER=ConsEnd /STK=2 /UG=Rn.69225 /UG_TITLE=ESTs, Weakly similar to T30253 spalt protein - mouse (M.musculus) BI288834 similar to sal-like 4 isoform a LOC686412 686412 XM_001074001 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1392284_at BF405779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405779 /DB_XREF=gi:11393749 /DB_XREF=UI-R-CA1-bje-k-19-0-UI.s1 /CLONE=UI-R-CA1-bje-k-19-0-UI /FEA=EST /CNT=2 /TID=Rn.58224.1 /TIER=ConsEnd /STK=2 /UG=Rn.58224 /UG_TITLE=ESTs BF405779 1392285_at AI044729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044729 /DB_XREF=gi:3291590 /DB_XREF=UI-R-C1-ki-c-10-0-UI.s1 /CLONE=UI-R-C1-ki-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.20794.1 /TIER=ConsEnd /STK=2 /UG=Rn.20794 /UG_TITLE=ESTs AI044729 shisa homolog 4 (Xenopus laevis) Shisa4 360848 NM_001077826 0016021 // integral to membrane // inferred from electronic annotation 1392286_at BF420742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420742 /DB_XREF=gi:11408731 /DB_XREF=UI-R-BJ2-bpz-f-05-0-UI.s1 /CLONE=UI-R-BJ2-bpz-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.63743.1 /TIER=ConsEnd /STK=2 /UG=Rn.63743 /UG_TITLE=ESTs BF420742 1392287_at AW523201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523201 /DB_XREF=gi:7165586 /DB_XREF=UI-R-BO0-ahs-e-06-0-UI.s1 /CLONE=UI-R-BO0-ahs-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.18215.1 /TIER=ConsEnd /STK=2 /UG=Rn.18215 /UG_TITLE=ESTs AW523201 1392288_at BE120230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120230 /DB_XREF=gi:8512335 /DB_XREF=UI-R-CA0-bal-a-09-0-UI.s1 /CLONE=UI-R-CA0-bal-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.47530.1 /TIER=ConsEnd /STK=2 /UG=Rn.47530 /UG_TITLE=ESTs BE120230 1392289_at BI276179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276179 /DB_XREF=gi:14920844 /DB_XREF=UI-R-CX0-bxf-a-06-0-UI.s1 /CLONE=UI-R-CX0-bxf-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.77549.1 /TIER=ConsEnd /STK=2 /UG=Rn.77549 /UG_TITLE=ESTs, Highly similar to T08676 hypothetical protein DKFZp564G2022.1 (H.sapiens) BI276179 transmembrane protein 87A Tmem87a 366170 XM_001075817 /// XM_002726163 /// XM_345422 0016021 // integral to membrane // inferred from electronic annotation 1392290_at BE095472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095472 /DB_XREF=gi:8486403 /DB_XREF=UI-R-BU0-apa-a-08-0-UI.s1 /CLONE=UI-R-BU0-apa-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.26806.1 /TIER=ConsEnd /STK=2 /UG=Rn.26806 /UG_TITLE=ESTs BE095472 1392291_at BF415328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415328 /DB_XREF=gi:11403317 /DB_XREF=UI-R-CA0-bpc-f-01-0-UI.s1 /CLONE=UI-R-CA0-bpc-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.62646.1 /TIER=ConsEnd /STK=2 /UG=Rn.62646 /UG_TITLE=ESTs BF415328 1392292_at BM386143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386143 /DB_XREF=gi:18186196 /DB_XREF=UI-R-CN1-cjf-g-11-0-UI.s1 /CLONE=UI-R-CN1-cjf-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.79712.1 /TIER=ConsEnd /STK=2 /UG=Rn.79712 /UG_TITLE=ESTs BM386143 potassium channel tetramerisation domain containing 5 Kctd5 287109 NM_001105768 0006813 // potassium ion transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392293_at BE113790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113790 /DB_XREF=gi:8505895 /DB_XREF=UI-R-BJ1-awh-d-11-0-UI.s1 /CLONE=UI-R-BJ1-awh-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.52240.1 /TIER=ConsEnd /STK=2 /UG=Rn.52240 /UG_TITLE=ESTs BE113790 1392294_at BE119402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119402 /DB_XREF=gi:8511507 /DB_XREF=UI-R-CA0-bac-b-07-0-UI.s1 /CLONE=UI-R-CA0-bac-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.75170.1 /TIER=ConsEnd /STK=2 /UG=Rn.75170 /UG_TITLE=ESTs BE119402 1392295_a_at AI030771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030771 /DB_XREF=gi:3248597 /DB_XREF=UI-R-C0-jo-c-01-0-UI.s1 /CLONE=UI-R-C0-jo-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.18590.1 /TIER=ConsEnd /STK=2 /UG=Rn.18590 /UG_TITLE=ESTs AI030771 1392296_at AI502798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502798 /DB_XREF=gi:4400649 /DB_XREF=UI-R-C1-lc-g-03-0-UI.s1 /CLONE=UI-R-C1-lc-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.27156.1 /TIER=ConsEnd /STK=2 /UG=Rn.27156 /UG_TITLE=ESTs AI502798 1392297_at BF410297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410297 /DB_XREF=gi:11398272 /DB_XREF=UI-R-CA1-bjv-h-03-0-UI.s1 /CLONE=UI-R-CA1-bjv-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.61648.1 /TIER=ConsEnd /STK=2 /UG=Rn.61648 /UG_TITLE=ESTs BF410297 1392298_at AI549151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549151 /DB_XREF=gi:4466639 /DB_XREF=UI-R-C3-ts-c-02-0-UI.s1 /CLONE=UI-R-C3-ts-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.67521.1 /TIER=ConsEnd /STK=2 /UG=Rn.67521 /UG_TITLE=ESTs AI549151 ArfGAP with coiled-coil, ankyrin repeat and PH domains 3 Acap3 313772 NM_001107999 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1392299_at BE113875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113875 /DB_XREF=gi:8505980 /DB_XREF=UI-R-CA0-axe-d-11-0-UI.s1 /CLONE=UI-R-CA0-axe-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.36539.1 /TIER=ConsEnd /STK=2 /UG=Rn.36539 /UG_TITLE=ESTs BE113875 nitric oxide synthase 1 (neuronal) adaptor protein Nos1ap 192363 NM_138922 0007269 // neurotransmitter secretion // non-traceable author statement /// 0050999 // regulation of nitric-oxide synthase activity // inferred by curator 0005737 // cytoplasm // non-traceable author statement 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0030165 // PDZ domain binding // inferred from direct assay /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0050998 // nitric-oxide synthase binding // inferred from direct assay /// 0050998 // nitric-oxide synthase binding // inferred from physical interaction 1392300_at BE110178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110178 /DB_XREF=gi:8502283 /DB_XREF=UI-R-CA0-axk-a-04-0-UI.s1 /CLONE=UI-R-CA0-axk-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.51094.1 /TIER=ConsEnd /STK=2 /UG=Rn.51094 /UG_TITLE=ESTs BE110178 1392301_at AI237897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237897 /DB_XREF=gi:3831403 /DB_XREF=EST234459 /CLONE=RSPCT95 /FEA=EST /CNT=2 /TID=Rn.66504.1 /TIER=ConsEnd /STK=2 /UG=Rn.66504 /UG_TITLE=ESTs AI237897 SH3 domain and tetratricopeptide repeats 1 Sh3tc1 305441 NM_001107226 0005488 // binding // inferred from electronic annotation 1392302_at BI288847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288847 /DB_XREF=gi:14945826 /DB_XREF=UI-R-DK0-cdf-f-01-0-UI.s1 /CLONE=UI-R-DK0-cdf-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.56598.1 /TIER=ConsEnd /STK=2 /UG=Rn.56598 /UG_TITLE=ESTs BI288847 1392303_at AA998501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998501 /DB_XREF=gi:4290294 /DB_XREF=UI-R-C0-ie-f-12-0-UI.s1 /CLONE=UI-R-C0-ie-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.66769.1 /TIER=ConsEnd /STK=2 /UG=Rn.66769 /UG_TITLE=ESTs AA998501 MORC family CW-type zinc finger 2 Morc2 289736 NM_001106016 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1392304_at BI295865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295865 /DB_XREF=gi:14959739 /DB_XREF=UI-R-DK0-cfb-f-01-0-UI.s1 /CLONE=UI-R-DK0-cfb-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.68150.1 /TIER=ConsEnd /STK=2 /UG=Rn.68150 /UG_TITLE=ESTs BI295865 1392305_at BE106921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106921 /DB_XREF=gi:8499023 /DB_XREF=UI-R-BT1-asu-g-03-0-UI.s1 /CLONE=UI-R-BT1-asu-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.51078.1 /TIER=ConsEnd /STK=2 /UG=Rn.51078 /UG_TITLE=ESTs BE106921 1392306_at AI454015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454015 /DB_XREF=gi:4290766 /DB_XREF=UI-R-BT0-qa-b-08-0-UI.s1 /CLONE=UI-R-BT0-qa-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.59918.1 /TIER=ConsEnd /STK=2 /UG=Rn.59918 /UG_TITLE=ESTs AI454015 1392307_at BI300978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300978 /DB_XREF=gi:14977258 /DB_XREF=UI-R-DK0-cfk-c-04-0-UI.s2 /CLONE=UI-R-DK0-cfk-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.62638.1 /TIER=ConsEnd /STK=2 /UG=Rn.62638 /UG_TITLE=ESTs BI300978 1392308_at AI044869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044869 /DB_XREF=gi:3291688 /DB_XREF=UI-R-C1-kd-e-11-0-UI.s1 /CLONE=UI-R-C1-kd-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.16046.1 /TIER=ConsEnd /STK=2 /UG=Rn.16046 /UG_TITLE=ESTs AI044869 phospholipase A2, group IID Pla2g2d 298579 NM_001013428 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation 0004623 // phospholipase A2 activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1392309_at BI300426 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300426 /DB_XREF=gi:14976706 /DB_XREF=UI-R-CV2-cie-g-11-0-UI.s1 /CLONE=UI-R-CV2-cie-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.25278.2 /TIER=ConsEnd /STK=2 /UG=Rn.25278 /UG_TITLE=ESTs BI300426 junctional adhesion molecule 2 Jam2 619374 NM_001034004 0005886 // plasma membrane // not recorded 1392310_at AI535319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535319 /DB_XREF=gi:4449454 /DB_XREF=UI-R-C3-sw-d-03-0-UI.s1 /CLONE=UI-R-C3-sw-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.52643.1 /TIER=ConsEnd /STK=2 /UG=Rn.52643 /UG_TITLE=ESTs AI535319 1392311_at BF389762 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389762 /DB_XREF=gi:11374598 /DB_XREF=UI-R-BS2-bdo-d-12-0-UI.s1 /CLONE=UI-R-BS2-bdo-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.57006.1 /TIER=ConsEnd /STK=2 /UG=Rn.57006 /UG_TITLE=ESTs BF389762 1392312_at BG375255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375255 /DB_XREF=gi:13299727 /DB_XREF=UI-R-CV1-bsy-b-11-0-UI.s1 /CLONE=UI-R-CV1-bsy-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.66299.1 /TIER=ConsEnd /STK=2 /UG=Rn.66299 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) BG375255 1392313_at BG376902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376902 /DB_XREF=gi:13301374 /DB_XREF=UI-R-CA1-bli-g-10-0-UI.s1 /CLONE=UI-R-CA1-bli-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.66447.1 /TIER=ConsEnd /STK=2 /UG=Rn.66447 /UG_TITLE=ESTs BG376902 leucine rich repeat and fibronectin type III domain containing 4 Lrfn4 688721 NM_001109508 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1392314_at BG380439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380439 /DB_XREF=gi:13304911 /DB_XREF=UI-R-CT0-btx-c-08-0-UI.s1 /CLONE=UI-R-CT0-btx-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.66745.1 /TIER=ConsEnd /STK=2 /UG=Rn.66745 /UG_TITLE=ESTs BG380439 1392315_at BE107351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107351 /DB_XREF=gi:8499456 /DB_XREF=UI-R-BS1-ays-g-03-0-UI.s1 /CLONE=UI-R-BS1-ays-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.67025.1 /TIER=ConsEnd /STK=2 /UG=Rn.67025 /UG_TITLE=ESTs BE107351 1392316_at BI293349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293349 /DB_XREF=gi:14954766 /DB_XREF=UI-R-DK0-cdo-a-09-0-UI.s1 /CLONE=UI-R-DK0-cdo-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.73471.1 /TIER=ConsEnd /STK=2 /UG=Rn.73471 /UG_TITLE=ESTs BI293349 1392317_at BI288026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288026 /DB_XREF=gi:14944192 /DB_XREF=UI-R-BT1-bni-e-03-0-UI.s2 /CLONE=UI-R-BT1-bni-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.75007.1 /TIER=ConsEnd /STK=2 /UG=Rn.75007 /UG_TITLE=ESTs BI288026 1392318_at BI292980 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292980 /DB_XREF=gi:14954027 /DB_XREF=UI-R-CZ0-bya-f-09-0-UI.s1 /CLONE=UI-R-CZ0-bya-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.79366.1 /TIER=ConsEnd /STK=2 /UG=Rn.79366 /UG_TITLE=ESTs BI292980 Family with sequence similarity 100, member B Fam100b 287840 XM_001081720 /// XM_213532 1392319_at BE107672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107672 /DB_XREF=gi:8499777 /DB_XREF=UI-R-BT1-ame-e-05-0-UI.s1 /CLONE=UI-R-BT1-ame-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.79410.1 /TIER=ConsEnd /STK=2 /UG=Rn.79410 /UG_TITLE=ESTs BE107672 leucine rich repeat containing 10B Lrrc10b 309208 NM_001107577 0005515 // protein binding // inferred from electronic annotation 1392320_s_at AI763657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763657 /DB_XREF=gi:5209592 /DB_XREF=UI-R-Y0-acj-e-10-0-UI.s1 /CLONE=UI-R-Y0-acj-e-10-0-UI /FEA=EST /CNT=4 /TID=Rn.16863.1 /TIER=ConsEnd /STK=0 /UG=Rn.16863 /UG_TITLE=ESTs AI763657 glomulin, FKBP associated protein Glmn 289437 NM_001105993 0001570 // vasculogenesis // not recorded /// 0040029 // regulation of gene expression, epigenetic // not recorded /// 0042130 // negative regulation of T cell proliferation // not recorded /// 0042327 // positive regulation of phosphorylation // not recorded /// 0042692 // muscle cell differentiation // not recorded /// 0045086 // positive regulation of interleukin-2 biosynthetic process // not recorded /// 0050715 // positive regulation of cytokine secretion // not recorded 0005171 // hepatocyte growth factor receptor binding // not recorded /// 0005515 // protein binding // not recorded 1392321_at BE120641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120641 /DB_XREF=gi:8512746 /DB_XREF=UI-R-CA0-bav-h-04-0-UI.s1 /CLONE=UI-R-CA0-bav-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.53619.1 /TIER=ConsEnd /STK=2 /UG=Rn.53619 /UG_TITLE=ESTs BE120641 1392322_at BM388319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388319 /DB_XREF=gi:18188372 /DB_XREF=UI-R-DM1-cjz-j-06-0-UI.s1 /CLONE=UI-R-DM1-cjz-j-06-0-UI /FEA=EST /CNT=2 /TID=Rn.28767.1 /TIER=ConsEnd /STK=2 /UG=Rn.28767 /UG_TITLE=ESTs BM388319 GTPase, IMAP family member 7 Gimap7 500113 NM_001024328 0005525 // GTP binding // inferred from electronic annotation 1392323_at BF412692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412692 /DB_XREF=gi:11400681 /DB_XREF=UI-R-BT1-bnt-a-04-0-UI.s1 /CLONE=UI-R-BT1-bnt-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.62143.1 /TIER=ConsEnd /STK=2 /UG=Rn.62143 /UG_TITLE=ESTs BF412692 Nucleoredoxin Nxn 360577 NM_001108285 0008152 // metabolic process // not recorded /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005634 // nucleus // not recorded 0004791 // thioredoxin-disulfide reductase activity // not recorded /// 0016209 // antioxidant activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1392324_at AI137983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137983 /DB_XREF=gi:3638760 /DB_XREF=UI-R-C2p-oi-a-04-0-UI.s1 /CLONE=UI-R-C2p-oi-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.23793.1 /TIER=ConsEnd /STK=2 /UG=Rn.23793 /UG_TITLE=ESTs, Weakly similar to EPS8 MOUSE EPIDERMAL GROWTH FACTOR RECEPTOR KINASE SUBSTRATE EPS8 (M.musculus) AI137983 EPS8-like 2 Eps8l2 361674 NM_001108508 1392325_at BF398187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398187 /DB_XREF=gi:11383173 /DB_XREF=UI-R-BS2-ben-d-12-0-UI.s1 /CLONE=UI-R-BS2-ben-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.75650.1 /TIER=ConsEnd /STK=2 /UG=Rn.75650 /UG_TITLE=ESTs BF398187 1392326_at BE100968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100968 /DB_XREF=gi:8492871 /DB_XREF=UI-R-BJ1-aug-f-01-0-UI.s1 /CLONE=UI-R-BJ1-aug-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.50013.1 /TIER=ConsEnd /STK=2 /UG=Rn.50013 /UG_TITLE=ESTs, Weakly similar to DYHC RAT DYNEIN HEAVY CHAIN, CYTOSOLIC (R.norvegicus) BE100968 dynein, axonemal, heavy chain 17 Dnah17 287845 XM_001081748 /// XM_213534 0007018 // microtubule-based movement // inferred from electronic annotation 0030286 // dynein complex // inferred from electronic annotation 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation 1392327_s_at AW535025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535025 /DB_XREF=gi:7177439 /DB_XREF=UI-R-BS0-aoa-d-03-0-UI.s1 /CLONE=UI-R-BS0-aoa-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.18294.1 /TIER=ConsEnd /STK=2 /UG=Rn.18294 /UG_TITLE=ESTs AW535025 1392328_at AI058669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058669 /DB_XREF=gi:3332446 /DB_XREF=UI-R-C1-kp-f-11-0-UI.s1 /CLONE=UI-R-C1-kp-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.18946.1 /TIER=ConsEnd /STK=2 /UG=Rn.18946 /UG_TITLE=ESTs AI058669 Coiled-coil domain containing 90A Ccdc90a 291034 XM_001060245 /// XM_214448 1392329_at BI295531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295531 /DB_XREF=gi:14959072 /DB_XREF=UI-R-DK0-cev-e-03-0-UI.s1 /CLONE=UI-R-DK0-cev-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.52743.1 /TIER=ConsEnd /STK=2 /UG=Rn.52743 /UG_TITLE=ESTs BI295531 homeobox and leucine zipper encoding Homez 260325 NM_152849 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1392330_at BF417415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417415 /DB_XREF=gi:11405404 /DB_XREF=UI-R-CN0-bld-h-05-0-UI.s1 /CLONE=UI-R-CN0-bld-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.63214.1 /TIER=ConsEnd /STK=2 /UG=Rn.63214 /UG_TITLE=ESTs, Moderately similar to N6M1_HUMAN PUTATIVE N6-DNA-METHYLTRANSFERASE (H.sapiens) BF417415 N-6 adenine-specific DNA methyltransferase 1 (putative) N6amt1 288309 NM_001191592 /// XM_001070533 /// XM_002727876 /// XM_213675 0030307 // positive regulation of cell growth // not recorded 0043234 // protein complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008276 // protein methyltransferase activity // not recorded 1392331_at BE100256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100256 /DB_XREF=gi:8492145 /DB_XREF=UI-R-BJ1-atn-d-12-0-UI.s1 /CLONE=UI-R-BJ1-atn-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.26787.1 /TIER=ConsEnd /STK=2 /UG=Rn.26787 /UG_TITLE=ESTs BE100256 1392332_at AI070390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070390 /DB_XREF=gi:3396641 /DB_XREF=UI-R-Y0-lt-e-11-0-UI.s1 /CLONE=UI-R-Y0-lt-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.19741.1 /TIER=ConsEnd /STK=2 /UG=Rn.19741 /UG_TITLE=ESTs AI070390 myelin transcription factor 1 Myt1 362291 NM_001108615 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1392333_at BI277918 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277918 /DB_XREF=gi:14924259 /DB_XREF=UI-R-CY0-bxw-a-11-0-UI.s1 /CLONE=UI-R-CY0-bxw-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.81330.1 /TIER=ConsEnd /STK=2 /UG=Rn.81330 /UG_TITLE=ESTs BI277918 peroxisomal biogenesis factor 16 Pex16 311203 NM_001012088 0006625 // protein targeting to peroxisome // not recorded /// 0007031 // peroxisome organization // not recorded /// 0016557 // peroxisome membrane biogenesis // not recorded /// 0016558 // protein import into peroxisome matrix // not recorded /// 0032581 // ER-dependent peroxisome organization // not recorded /// 0045046 // protein import into peroxisome membrane // not recorded 0005777 // peroxisome // not recorded /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // not recorded /// 0005779 // integral to peroxisomal membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded 0008022 // protein C-terminus binding // not recorded 1392334_at AW528743 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528743 /DB_XREF=gi:7171157 /DB_XREF=UI-R-BO1-ajo-g-10-0-UI.s1 /CLONE=UI-R-BO1-ajo-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.46989.1 /TIER=ConsEnd /STK=2 /UG=Rn.46989 /UG_TITLE=ESTs, Moderately similar to S04363 class II histocompatibility antigen RT1-B alpha chain precursor - rat (R.norvegicus) AW528743 RT1 class II, locus Ba RT1-Ba 309621 NM_001008831 0002504 // antigen processing and presentation of peptide or polysaccharide antigen via MHC class II // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // not recorded /// 0019882 // antigen processing and presentation // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // not recorded /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // inferred from electronic annotation /// 0045582 // positive regulation of T cell differentiation // not recorded /// 0045582 // positive regulation of T cell differentiation // inferred from electronic annotation /// 0048002 // antigen processing and presentation of peptide antigen // not recorded /// 0048002 // antigen processing and presentation of peptide antigen // inferred from electronic annotation 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042613 // MHC class II protein complex // inferred from electronic annotation /// 0042613 // MHC class II protein complex // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042605 // peptide antigen binding // not recorded /// 0042605 // peptide antigen binding // inferred from electronic annotation 1392335_at BF404176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404176 /DB_XREF=gi:11392151 /DB_XREF=UI-R-CA1-biw-a-22-0-UI.s1 /CLONE=UI-R-CA1-biw-a-22-0-UI /FEA=EST /CNT=2 /TID=Rn.61950.1 /TIER=ConsEnd /STK=2 /UG=Rn.61950 /UG_TITLE=ESTs BF404176 1392336_at AI712387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712387 /DB_XREF=gi:5016187 /DB_XREF=UI-R-AF1-aaw-a-04-0-UI.s1 /CLONE=UI-R-AF1-aaw-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.26862.1 /TIER=ConsEnd /STK=2 /UG=Rn.26862 /UG_TITLE=ESTs AI712387 1392337_at BF399475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399475 /DB_XREF=gi:11384483 /DB_XREF=UI-R-CA1-bjb-p-11-0-UI.s1 /CLONE=UI-R-CA1-bjb-p-11-0-UI /FEA=EST /CNT=2 /TID=Rn.57800.1 /TIER=ConsEnd /STK=2 /UG=Rn.57800 /UG_TITLE=ESTs BF399475 coiled-coil domain containing 75 Ccdc75 362685 NM_001108700 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation 1392338_at AA892989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892989 /DB_XREF=gi:4132244 /DB_XREF=EST196792 /CLONE=RKIBA78 /FEA=EST /CNT=2 /TID=Rn.22744.1 /TIER=ConsEnd /STK=2 /UG=Rn.22744 /UG_TITLE=ESTs AA892989 1392339_at BF406130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406130 /DB_XREF=gi:11394105 /DB_XREF=UI-R-CA1-bjf-c-01-0-UI.s1 /CLONE=UI-R-CA1-bjf-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.62910.1 /TIER=ConsEnd /STK=2 /UG=Rn.62910 /UG_TITLE=ESTs, Highly similar to SYFB_MOUSE PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN (PHENYLALANINE--TRNA LIGASE BETA CHAIN) (PHERS) (M.musculus) BF406130 1392340_at BF416150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416150 /DB_XREF=gi:11404139 /DB_XREF=UI-R-CA0-bkq-g-10-0-UI.s1 /CLONE=UI-R-CA0-bkq-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.62932.1 /TIER=ConsEnd /STK=2 /UG=Rn.62932 /UG_TITLE=ESTs, Weakly similar to ENC1_MOUSE ECTODERM-NEURAL CORTEX-1 PROTEIN (ENC-1) (M.musculus) BF416150 kelch-like 3 (Drosophila) Klhl3 498697 XM_002725229 /// XM_573982 0005515 // protein binding // inferred from electronic annotation 1392341_at AW523444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523444 /DB_XREF=gi:7165829 /DB_XREF=UI-R-BO0-aho-c-06-0-UI.s1 /CLONE=UI-R-BO0-aho-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.45643.1 /TIER=ConsEnd /STK=2 /UG=Rn.45643 /UG_TITLE=ESTs AW523444 1392342_at AI709861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709861 /DB_XREF=gi:4999637 /DB_XREF=UI-R-AE1-zb-f-04-0-UI.s1 /CLONE=UI-R-AE1-zb-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.41097.1 /TIER=ConsEnd /STK=2 /UG=Rn.41097 /UG_TITLE=ESTs AI709861 1392343_at AI030867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030867 /DB_XREF=gi:3248693 /DB_XREF=UI-R-C0-jp-e-03-0-UI.s1 /CLONE=UI-R-C0-jp-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.18617.1 /TIER=ConsEnd /STK=2 /UG=Rn.18617 /UG_TITLE=ESTs AI030867 1392344_at AI709455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709455 /DB_XREF=gi:4999231 /DB_XREF=UI-R-C3-ss-e-06-0-UI.s1 /CLONE=UI-R-C3-ss-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.41089.1 /TIER=ConsEnd /STK=2 /UG=Rn.41089 /UG_TITLE=ESTs AI709455 1392345_at BF387482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387482 /DB_XREF=gi:11372306 /DB_XREF=UI-R-CA1-bbm-h-10-0-UI.s1 /CLONE=UI-R-CA1-bbm-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.62672.1 /TIER=ConsEnd /STK=2 /UG=Rn.62672 /UG_TITLE=ESTs, Highly similar to LSM4_MOUSE U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM4 (M.musculus) BF387482 1392346_at BF391214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391214 /DB_XREF=gi:11376062 /DB_XREF=UI-R-CA1-bcq-f-09-0-UI.s1 /CLONE=UI-R-CA1-bcq-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.62880.1 /TIER=ConsEnd /STK=2 /UG=Rn.62880 /UG_TITLE=ESTs BF391214 1392347_at AW527765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527765 /DB_XREF=gi:7170219 /DB_XREF=UI-R-BO1-ajk-d-01-0-UI.s1 /CLONE=UI-R-BO1-ajk-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.64262.1 /TIER=ConsEnd /STK=2 /UG=Rn.64262 /UG_TITLE=ESTs AW527765 1392348_at BF418379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418379 /DB_XREF=gi:11406368 /DB_XREF=UI-R-BJ2-box-g-01-0-UI.s1 /CLONE=UI-R-BJ2-box-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.64479.1 /TIER=ConsEnd /STK=2 /UG=Rn.64479 /UG_TITLE=ESTs BF418379 1392349_at BE116021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116021 /DB_XREF=gi:8508126 /DB_XREF=UI-R-BS1-axy-e-12-0-UI.s1 /CLONE=UI-R-BS1-axy-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.75065.1 /TIER=ConsEnd /STK=2 /UG=Rn.75065 /UG_TITLE=ESTs, Highly similar to SL53_MOUSE Sodiummyo-inositol cotransporter (Na(+)myo-inositol cotransporter) (M.musculus) BE116021 solute carrier family 5 (inositol transporters), member 3 Slc5a3 114507 NM_053715 0006020 // inositol metabolic process // not recorded /// 0006020 // inositol metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0007422 // peripheral nervous system development // not recorded /// 0007422 // peripheral nervous system development // inferred from electronic annotation /// 0015798 // myo-inositol transport // not recorded /// 0015798 // myo-inositol transport // inferred from electronic annotation /// 0043576 // regulation of respiratory gaseous exchange // not recorded /// 0043576 // regulation of respiratory gaseous exchange // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005367 // myo-inositol:sodium symporter activity // not recorded 1392350_at AW525149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525149 /DB_XREF=gi:7167534 /DB_XREF=UI-R-BJ0p-aio-d-03-0-UI.s1 /CLONE=UI-R-BJ0p-aio-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.79008.1 /TIER=ConsEnd /STK=2 /UG=Rn.79008 /UG_TITLE=ESTs, Weakly similar to T17239 hypothetical protein DKFZp434B027.1 (H.sapiens) AW525149 1392351_at BI288242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288242 /DB_XREF=gi:14944636 /DB_XREF=UI-R-DK0-ccy-e-09-0-UI.s1 /CLONE=UI-R-DK0-ccy-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.18863.1 /TIER=ConsEnd /STK=2 /UG=Rn.18863 /UG_TITLE=ESTs BI288242 fucose-1-phosphate guanylyltransferase Fpgt 310935 NM_199494 1392352_at AW521481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521481 /DB_XREF=gi:7163906 /DB_XREF=UI-R-BO0-agn-e-11-0-UI.s1 /CLONE=UI-R-BO0-agn-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.27808.1 /TIER=ConsEnd /STK=2 /UG=Rn.27808 /UG_TITLE=ESTs AW521481 1392353_at AI598513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598513 /DB_XREF=gi:4607547 /DB_XREF=EST250202 /CLONE=REMDR91 /FEA=EST /CNT=2 /TID=Rn.40241.1 /TIER=ConsEnd /STK=2 /UG=Rn.40241 /UG_TITLE=ESTs AI598513 1392354_at AW529939 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529939 /DB_XREF=gi:7172353 /DB_XREF=UI-R-C4-alc-a-09-0-UI.s1 /CLONE=UI-R-C4-alc-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.45016.1 /TIER=ConsEnd /STK=2 /UG=Rn.45016 /UG_TITLE=ESTs AW529939 1392355_at AW527665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527665 /DB_XREF=gi:7170084 /DB_XREF=UI-R-BT1-ajz-h-05-0-UI.s1 /CLONE=UI-R-BT1-ajz-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.46616.1 /TIER=ConsEnd /STK=2 /UG=Rn.46616 /UG_TITLE=ESTs AW527665 1392356_at AW528693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528693 /DB_XREF=gi:7171107 /DB_XREF=UI-R-BO1-ajo-c-07-0-UI.s1 /CLONE=UI-R-BO1-ajo-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.46973.1 /TIER=ConsEnd /STK=2 /UG=Rn.46973 /UG_TITLE=ESTs AW528693 Ferredoxin 1-like Fdx1l 313786 NM_001108002 0005739 // mitochondrion // not recorded 0009055 // electron carrier activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation 1392357_at BI280028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280028 /DB_XREF=gi:14928420 /DB_XREF=UI-R-DD0-cbb-d-08-0-UI.s1 /CLONE=UI-R-DD0-cbb-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.47153.1 /TIER=ConsEnd /STK=2 /UG=Rn.47153 /UG_TITLE=ESTs BI280028 1392358_at AW531916 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531916 /DB_XREF=gi:7174330 /DB_XREF=UI-R-BS0-amj-h-04-0-UI.s1 /CLONE=UI-R-BS0-amj-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.47845.1 /TIER=ConsEnd /STK=2 /UG=Rn.47845 /UG_TITLE=ESTs AW531916 1392359_at BE120205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120205 /DB_XREF=gi:8512310 /DB_XREF=UI-R-CA0-bap-g-07-0-UI.s1 /CLONE=UI-R-CA0-bap-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.49104.1 /TIER=ConsEnd /STK=2 /UG=Rn.49104 /UG_TITLE=ESTs, Highly similar to S68176 TOG protein (H.sapiens) BE120205 1392360_at BE119503 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119503 /DB_XREF=gi:8511572 /DB_XREF=UI-R-CA0-bae-a-12-0-UI.s1 /CLONE=UI-R-CA0-bae-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.49151.1 /TIER=ConsEnd /STK=2 /UG=Rn.49151 /UG_TITLE=ESTs BE119503 1392361_at BE105683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105683 /DB_XREF=gi:8497785 /DB_XREF=UI-R-BX0-arx-g-07-0-UI.s1 /CLONE=UI-R-BX0-arx-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.49221.1 /TIER=ConsEnd /STK=2 /UG=Rn.49221 /UG_TITLE=ESTs BE105683 1392362_at BE097725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097725 /DB_XREF=gi:8488656 /DB_XREF=UI-R-BO1-aqb-a-06-0-UI.s1 /CLONE=UI-R-BO1-aqb-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.49674.1 /TIER=ConsEnd /STK=2 /UG=Rn.49674 /UG_TITLE=ESTs BE097725 1392363_at BE099840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099840 /DB_XREF=gi:8491721 /DB_XREF=UI-R-BJ1-atq-g-11-0-UI.s1 /CLONE=UI-R-BJ1-atq-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.49912.1 /TIER=ConsEnd /STK=2 /UG=Rn.49912 /UG_TITLE=ESTs BE099840 1392364_at BE102708 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102708 /DB_XREF=gi:8494807 /DB_XREF=UI-R-BT1-aqp-b-10-0-UI.s1 /CLONE=UI-R-BT1-aqp-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.50381.1 /TIER=ConsEnd /STK=2 /UG=Rn.50381 /UG_TITLE=ESTs BE102708 1392365_at BF387162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387162 /DB_XREF=gi:11371986 /DB_XREF=UI-R-CA1-bbq-c-06-0-UI.s1 /CLONE=UI-R-CA1-bbq-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.51091.1 /TIER=ConsEnd /STK=2 /UG=Rn.51091 /UG_TITLE=ESTs BF387162 1392366_at BE112539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112539 /DB_XREF=gi:8504644 /DB_XREF=UI-R-BJ1-avi-h-03-0-UI.s1 /CLONE=UI-R-BJ1-avi-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.51540.1 /TIER=ConsEnd /STK=2 /UG=Rn.51540 /UG_TITLE=ESTs BE112539 1392367_at BE112073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112073 /DB_XREF=gi:8504178 /DB_XREF=UI-R-BJ1-avk-d-03-0-UI.s1 /CLONE=UI-R-BJ1-avk-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.52050.1 /TIER=ConsEnd /STK=2 /UG=Rn.52050 /UG_TITLE=ESTs BE112073 1392368_at BE117273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117273 /DB_XREF=gi:8509378 /DB_XREF=UI-R-BS1-ayh-h-01-0-UI.s1 /CLONE=UI-R-BS1-ayh-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.52810.1 /TIER=ConsEnd /STK=2 /UG=Rn.52810 /UG_TITLE=ESTs BE117273 1392369_at BF388926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388926 /DB_XREF=gi:11373793 /DB_XREF=UI-R-BS2-bdk-c-02-0-UI.s1 /CLONE=UI-R-BS2-bdk-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.56475.1 /TIER=ConsEnd /STK=2 /UG=Rn.56475 /UG_TITLE=ESTs BF388926 1392370_at BF392339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392339 /DB_XREF=gi:11377196 /DB_XREF=UI-R-CA0-bfn-h-10-0-UI.s1 /CLONE=UI-R-CA0-bfn-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.57799.1 /TIER=ConsEnd /STK=2 /UG=Rn.57799 /UG_TITLE=ESTs, Weakly similar to TBB1 RAT TUBULIN BETA CHAIN (R.norvegicus) BF392339 tubulin, epsilon 1 Tube1 361856 NM_001108536 0007017 // microtubule-based process // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1392371_at BF393540 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393540 /DB_XREF=gi:11378402 /DB_XREF=UI-R-CA0-bgd-b-03-0-UI.s1 /CLONE=UI-R-CA0-bgd-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.58090.1 /TIER=ConsEnd /STK=2 /UG=Rn.58090 /UG_TITLE=ESTs BF393540 1392372_at BF396089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396089 /DB_XREF=gi:11381061 /DB_XREF=UI-R-CA1-bcb-b-11-0-UI.s1 /CLONE=UI-R-CA1-bcb-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.58520.1 /TIER=ConsEnd /STK=2 /UG=Rn.58520 /UG_TITLE=ESTs BF396089 1392373_at BF400637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400637 /DB_XREF=gi:11388612 /DB_XREF=UI-R-CA0-bhd-g-03-0-UI.s1 /CLONE=UI-R-CA0-bhd-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.58541.1 /TIER=ConsEnd /STK=2 /UG=Rn.58541 /UG_TITLE=ESTs BF400637 1392374_at BF389797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389797 /DB_XREF=gi:11374633 /DB_XREF=UI-R-BS2-bdo-h-01-0-UI.s1 /CLONE=UI-R-BS2-bdo-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.59294.1 /TIER=ConsEnd /STK=2 /UG=Rn.59294 /UG_TITLE=ESTs BF389797 1392375_at BF405872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405872 /DB_XREF=gi:11393847 /DB_XREF=UI-R-CA1-bii-a-05-0-UI.s1 /CLONE=UI-R-CA1-bii-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.60017.1 /TIER=ConsEnd /STK=2 /UG=Rn.60017 /UG_TITLE=ESTs BF405872 1392376_at BF405182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405182 /DB_XREF=gi:11393162 /DB_XREF=UI-R-CA1-biq-h-03-0-UI.s1 /CLONE=UI-R-CA1-biq-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.60690.1 /TIER=ConsEnd /STK=2 /UG=Rn.60690 /UG_TITLE=ESTs BF405182 1392377_at BF409415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409415 /DB_XREF=gi:11397354 /DB_XREF=UI-R-CA1-blf-d-02-0-UI.s1 /CLONE=UI-R-CA1-blf-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.61333.1 /TIER=ConsEnd /STK=2 /UG=Rn.61333 /UG_TITLE=ESTs BF409415 1392378_at BF410753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410753 /DB_XREF=gi:11398728 /DB_XREF=UI-R-CA0-bmc-e-08-0-UI.s1 /CLONE=UI-R-CA0-bmc-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.61713.1 /TIER=ConsEnd /STK=2 /UG=Rn.61713 /UG_TITLE=ESTs, Weakly similar to T20253 hypothetical protein F53E4.1 - Caenorhabditis elegans (C.elegans) BF410753 kelch domain containing 3 Klhdc3 363192 NM_001012203 0007126 // meiosis // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from electronic annotation /// 0000790 // nuclear chromatin // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003682 // chromatin binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392379_at BF413731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413731 /DB_XREF=gi:11401720 /DB_XREF=UI-R-CA0-boh-h-04-0-UI.s1 /CLONE=UI-R-CA0-boh-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.62088.1 /TIER=ConsEnd /STK=2 /UG=Rn.62088 /UG_TITLE=ESTs BF413731 1392380_at BF389979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389979 /DB_XREF=gi:11374821 /DB_XREF=UI-R-BS2-bdq-h-09-0-UI.s1 /CLONE=UI-R-BS2-bdq-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.62522.1 /TIER=ConsEnd /STK=2 /UG=Rn.62522 /UG_TITLE=ESTs BF389979 1392381_at BM382852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM382852 /DB_XREF=gi:18182905 /DB_XREF=UI-R-BT1-bko-e-12-0-UI.s1 /CLONE=UI-R-BT1-bko-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.71582.1 /TIER=ConsEnd /STK=2 /UG=Rn.71582 /UG_TITLE=ESTs BM382852 1392382_at BE117736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117736 /DB_XREF=gi:8509841 /DB_XREF=UI-R-BS1-azf-d-02-0-UI.s1 /CLONE=UI-R-BS1-azf-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.12176.2 /TIER=ConsEnd /STK=2 /UG=Rn.12176 /UG_TITLE=ESTs BE117736 Transforming growth factor, beta 2 Tgfb2 81809 NM_031131 0000902 // cell morphogenesis // not recorded /// 0000902 // cell morphogenesis // inferred from sequence or structural similarity /// 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001502 // cartilage condensation // inferred from electronic annotation /// 0001502 // cartilage condensation // not recorded /// 0001558 // regulation of cell growth // traceable author statement /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001654 // eye development // not recorded /// 0001654 // eye development // inferred from sequence or structural similarity /// 0001666 // response to hypoxia // not recorded /// 0001822 // kidney development // inferred from expression pattern /// 0001837 // epithelial to mesenchymal transition // not recorded /// 0001942 // hair follicle development // not recorded /// 0001942 // hair follicle development // inferred from sequence or structural similarity /// 0001942 // hair follicle development // inferred from electronic annotation /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0001974 // blood vessel remodeling // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006924 // activation-induced cell death of T cells // inferred from electronic annotation /// 0006924 // activation-induced cell death of T cells // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007184 // SMAD protein nuclear translocation // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007435 // salivary gland morphogenesis // not recorded /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from sequence or structural similarity /// 0007507 // heart development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from expression pattern /// 0007565 // female pregnancy // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008219 // cell death // not recorded /// 0008219 // cell death // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0008347 // glial cell migration // not recorded /// 0009314 // response to radiation // inferred from expression pattern /// 0009409 // response to cold // inferred from expression pattern /// 0009611 // response to wounding // not recorded /// 0010002 // cardioblast differentiation // not recorded /// 0010002 // cardioblast differentiation // inferred from sequence or structural similarity /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010634 // positive regulation of epithelial cell migration // not recorded /// 0010693 // negative regulation of alkaline phosphatase activity // not recorded /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0016049 // cell growth // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0022601 // menstrual cycle phase // not recorded /// 0030097 // hemopoiesis // not recorded /// 0030097 // hemopoiesis // inferred from sequence or structural similarity /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030199 // collagen fibril organization // not recorded /// 0030307 // positive regulation of cell growth // not recorded /// 0030307 // positive regulation of cell growth // inferred from sequence or structural similarity /// 0030308 // negative regulation of cell growth // not recorded /// 0030324 // lung development // traceable author statement /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0030593 // neutrophil chemotaxis // inferred from sequence or structural similarity /// 0030878 // thyroid gland development // inferred from expression pattern /// 0030902 // hindbrain development // inferred from expression pattern /// 0031016 // pancreas development // inferred from expression pattern /// 0031069 // hair follicle morphogenesis // not recorded /// 0031069 // hair follicle morphogenesis // inferred from sequence or structural similarity /// 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0032147 // activation of protein kinase activity // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032570 // response to progesterone stimulus // not recorded /// 0032874 // positive regulation of stress-activated MAPK cascade // not recorded /// 0032909 // regulation of transforming growth factor-beta2 production // not recorded /// 0033280 // response to vitamin D // inferred from expression pattern /// 0033630 // positive regulation of cell adhesion mediated by integrin // not recorded /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0034616 // response to laminar fluid shear stress // inferred from expression pattern /// 0040007 // growth // inferred from electronic annotation /// 0042060 // wound healing // inferred from expression pattern /// 0042060 // wound healing // inferred from mutant phenotype /// 0042060 // wound healing // inferred from sequence or structural similarity /// 0042127 // regulation of cell proliferation // traceable author statement /// 0042416 // dopamine biosynthetic process // not recorded /// 0042416 // dopamine biosynthetic process // inferred from sequence or structural similarity /// 0042416 // dopamine biosynthetic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042637 // catagen // not recorded /// 0042637 // catagen // inferred from sequence or structural similarity /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0043525 // positive regulation of neuron apoptosis // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from sequence or structural similarity /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0045216 // cell-cell junction organization // not recorded /// 0045726 // positive regulation of integrin biosynthetic process // not recorded /// 0045778 // positive regulation of ossification // not recorded /// 0045787 // positive regulation of cell cycle // not recorded /// 0045787 // positive regulation of cell cycle // inferred from sequence or structural similarity /// 0045787 // positive regulation of cell cycle // inferred from electronic annotation /// 0045823 // positive regulation of heart contraction // not recorded /// 0045823 // positive regulation of heart contraction // inferred from sequence or structural similarity /// 0048103 // somatic stem cell division // not recorded /// 0048103 // somatic stem cell division // inferred from sequence or structural similarity /// 0048103 // somatic stem cell division // inferred from electronic annotation /// 0048565 // digestive tract development // inferred from expression pattern /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0048666 // neuron development // not recorded /// 0048666 // neuron development // inferred from sequence or structural similarity /// 0048666 // neuron development // inferred from electronic annotation /// 0048702 // embryonic neurocranium morphogenesis // inferred from direct assay /// 0048839 // inner ear development // inferred from expression pattern /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050714 // positive regulation of protein secretion // not recorded /// 0050777 // negative regulation of immune response // inferred from direct assay /// 0050778 // positive regulation of immune response // inferred from sequence or structural similarity /// 0051280 // negative regulation of release of sequestered calcium ion into cytosol // inferred from direct assay /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0051795 // positive regulation of catagen // not recorded /// 0051795 // positive regulation of catagen // inferred from sequence or structural similarity /// 0051891 // positive regulation of cardioblast differentiation // not recorded /// 0051891 // positive regulation of cardioblast differentiation // inferred from sequence or structural similarity /// 0060038 // cardiac muscle cell proliferation // not recorded /// 0060038 // cardiac muscle cell proliferation // inferred from sequence or structural similarity /// 0060317 // cardiac epithelial to mesenchymal transition // not recorded /// 0060364 // frontal suture morphogenesis // inferred from expression pattern /// 0060389 // pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0060389 // pathway-restricted SMAD protein phosphorylation // not recorded 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region // inferred from electronic annotation /// 0005604 // basement membrane // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0030141 // stored secretory granule // inferred from direct assay /// 0030424 // axon // not recorded /// 0030424 // axon // inferred from sequence or structural similarity /// 0030424 // axon // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded /// 0031093 // platelet alpha granule lumen // not recorded /// 0043025 // neuronal cell body // not recorded /// 0043025 // neuronal cell body // inferred from sequence or structural similarity /// 0043025 // neuronal cell body // inferred from electronic annotation 0001540 // beta-amyloid binding // not recorded /// 0001540 // beta-amyloid binding // inferred from sequence or structural similarity /// 0004702 // receptor signaling protein serine/threonine kinase activity // not recorded /// 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from sequence or structural similarity /// 0005114 // type II transforming growth factor beta receptor binding // not recorded /// 0005160 // transforming growth factor beta receptor binding // not recorded /// 0005160 // transforming growth factor beta receptor binding // inferred from sequence or structural similarity /// 0005160 // transforming growth factor beta receptor binding // traceable author statement /// 0005160 // transforming growth factor beta receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from mutant phenotype 1392383_at BF405619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405619 /DB_XREF=gi:11393594 /DB_XREF=UI-R-CA1-bix-m-12-0-UI.s1 /CLONE=UI-R-CA1-bix-m-12-0-UI /FEA=EST /CNT=2 /TID=Rn.58010.1 /TIER=ConsEnd /STK=2 /UG=Rn.58010 /UG_TITLE=ESTs BF405619 1392384_s_at AI028867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI028867 /DB_XREF=gi:4294607 /DB_XREF=UI-R-C0-ik-b-08-0-UI.s1 /CLONE=UI-R-C0-ik-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.33251.1 /TIER=ConsEnd /STK=2 /UG=Rn.33251 /UG_TITLE=ESTs AI028867 aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase) Akr1d1 192242 NM_138884 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006699 // bile acid biosynthetic process // inferred from electronic annotation /// 0006699 // bile acid biosynthetic process // not recorded /// 0006707 // cholesterol catabolic process // inferred from electronic annotation /// 0006707 // cholesterol catabolic process // not recorded /// 0007586 // digestion // inferred from electronic annotation /// 0007586 // digestion // not recorded /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008207 // C21-steroid hormone metabolic process // inferred from electronic annotation /// 0008207 // C21-steroid hormone metabolic process // not recorded /// 0008209 // androgen metabolic process // inferred from electronic annotation /// 0008209 // androgen metabolic process // not recorded /// 0030573 // bile acid catabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004033 // aldo-keto reductase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0047568 // 3-oxo-5-beta-steroid 4-dehydrogenase activity // inferred from direct assay /// 0047787 // delta4-3-oxosteroid 5beta-reductase activity // inferred from electronic annotation 1392385_at BF398583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398583 /DB_XREF=gi:11383577 /DB_XREF=UI-R-BS2-beq-e-04-0-UI.s1 /CLONE=UI-R-BS2-beq-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.20544.1 /TIER=ConsEnd /STK=2 /UG=Rn.20544 /UG_TITLE=ESTs BF398583 Nuclear receptor coactivator 3 Ncoa3 84584 XM_001072953 /// XM_215947 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0033145 // positive regulation of steroid hormone receptor signaling pathway // inferred from mutant phenotype /// 0033148 // positive regulation of estrogen receptor signaling pathway // inferred from direct assay /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048589 // developmental growth // inferred from electronic annotation /// 0048589 // developmental growth // not recorded /// 0051091 // positive regulation of transcription factor activity // inferred from direct assay /// 0060068 // vagina development // inferred from electronic annotation /// 0060068 // vagina development // not recorded /// 0060744 // mammary gland branching involved in thelarche // inferred from electronic annotation /// 0060744 // mammary gland branching involved in thelarche // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016922 // ligand-dependent nuclear receptor binding // inferred from electronic annotation /// 0016922 // ligand-dependent nuclear receptor binding // not recorded /// 0030331 // estrogen receptor binding // inferred from physical interaction /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from direct assay /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0035257 // nuclear hormone receptor binding // inferred from electronic annotation /// 0035257 // nuclear hormone receptor binding // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1392386_at AI578435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578435 /DB_XREF=gi:4562811 /DB_XREF=UI-R-Y0-uz-d-12-0-UI.s3 /CLONE=UI-R-Y0-uz-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.20622.1 /TIER=ConsEnd /STK=2 /UG=Rn.20622 /UG_TITLE=ESTs AI578435 1392387_at AI549050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549050 /DB_XREF=gi:4466538 /DB_XREF=UI-R-C3-tv-h-12-0-UI.s1 /CLONE=UI-R-C3-tv-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.43494.1 /TIER=ConsEnd /STK=2 /UG=Rn.43494 /UG_TITLE=ESTs AI549050 1392388_at BE112281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112281 /DB_XREF=gi:8504386 /DB_XREF=UI-R-BJ1-avl-g-11-0-UI.s1 /CLONE=UI-R-BJ1-avl-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.23886.2 /TIER=ConsEnd /STK=2 /UG=Rn.23886 /UG_TITLE=ESTs, Weakly similar to DnaJ (Hsp40) homolog, subfamily B, member 9; Microvascular endothelial differentiation gene 1 (Rattus norvegicus) (R.norvegicus) BE112281 1392389_at BF389942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389942 /DB_XREF=gi:11374784 /DB_XREF=UI-R-BS2-bdq-e-04-0-UI.s1 /CLONE=UI-R-BS2-bdq-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.57049.1 /TIER=ConsEnd /STK=2 /UG=Rn.57049 /UG_TITLE=ESTs BF389942 1392390_at AW524258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524258 /DB_XREF=gi:7166643 /DB_XREF=UI-R-BO0-aig-c-02-0-UI.s1 /CLONE=UI-R-BO0-aig-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.45811.1 /TIER=ConsEnd /STK=2 /UG=Rn.45811 /UG_TITLE=ESTs AW524258 1392391_at BE112061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112061 /DB_XREF=gi:8504131 /DB_XREF=UI-R-BJ1-ave-g-10-0-UI.s1 /CLONE=UI-R-BJ1-ave-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.36260.1 /TIER=ConsEnd /STK=2 /UG=Rn.36260 /UG_TITLE=ESTs, Highly similar to DAG1 MOUSE DYSTROGLYCAN PRECURSOR (M.musculus) BE112061 dystroglycan 1 (dystrophin-associated glycoprotein 1) Dag1 114489 XM_001074892 /// XM_343483 0002011 // morphogenesis of an epithelial sheet // inferred from electronic annotation /// 0002011 // morphogenesis of an epithelial sheet // not recorded /// 0007016 // cytoskeletal anchoring at plasma membrane // inferred from electronic annotation /// 0007016 // cytoskeletal anchoring at plasma membrane // not recorded /// 0016340 // calcium-dependent cell-matrix adhesion // inferred from mutant phenotype /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // not recorded /// 0034453 // microtubule anchoring // inferred from electronic annotation /// 0034453 // microtubule anchoring // not recorded /// 0043409 // negative regulation of MAPKKK cascade // inferred from electronic annotation /// 0043409 // negative regulation of MAPKKK cascade // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0051898 // negative regulation of protein kinase B signaling cascade // inferred from electronic annotation /// 0051898 // negative regulation of protein kinase B signaling cascade // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // inferred from electronic annotation /// 0060441 // epithelial tube branching involved in lung morphogenesis // not recorded /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // not recorded 0005604 // basement membrane // inferred from mutant phenotype /// 0005604 // basement membrane // not recorded /// 0005604 // basement membrane // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005626 // insoluble fraction // inferred from electronic annotation /// 0005626 // insoluble fraction // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0005925 // focal adhesion // inferred from direct assay /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0016010 // dystrophin-associated glycoprotein complex // not recorded /// 0016010 // dystrophin-associated glycoprotein complex // inferred from electronic annotation /// 0016011 // dystroglycan complex // inferred from electronic annotation /// 0016011 // dystroglycan complex // not recorded /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030175 // filopodium // inferred from electronic annotation /// 0030175 // filopodium // not recorded /// 0042383 // sarcolemma // inferred from direct assay /// 0042383 // sarcolemma // not recorded /// 0042383 // sarcolemma // inferred from electronic annotation /// 0043034 // costamere // inferred from direct assay /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded /// 0070938 // contractile ring // inferred from electronic annotation /// 0070938 // contractile ring // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008307 // structural constituent of muscle // inferred from electronic annotation /// 0008307 // structural constituent of muscle // not recorded /// 0015631 // tubulin binding // inferred from electronic annotation /// 0015631 // tubulin binding // not recorded /// 0017166 // vinculin binding // inferred from electronic annotation /// 0017166 // vinculin binding // not recorded /// 0051393 // alpha-actinin binding // inferred from electronic annotation /// 0051393 // alpha-actinin binding // not recorded /// 0051635 // bacterial cell surface binding // inferred from mutant phenotype 1392392_at AI012510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012510 /DB_XREF=gi:3226342 /DB_XREF=EST206961 /CLONE=RPLAY24 /FEA=EST /CNT=2 /TID=Rn.43548.1 /TIER=ConsEnd /STK=2 /UG=Rn.43548 /UG_TITLE=ESTs AI012510 1392393_at AI501356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501356 /DB_XREF=gi:4399207 /DB_XREF=UI-R-C2p-ru-h-10-0-UI.s1 /CLONE=UI-R-C2p-ru-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.52096.1 /TIER=ConsEnd /STK=2 /UG=Rn.52096 /UG_TITLE=ESTs AI501356 1392394_at AI113047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113047 /DB_XREF=gi:3512996 /DB_XREF=UI-R-E1-fe-h-08-0-UI.s1 /CLONE=UI-R-E1-fe-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.22599.1 /TIER=ConsEnd /STK=2 /UG=Rn.22599 /UG_TITLE=ESTs AI113047 1392395_at AW528834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528834 /DB_XREF=gi:7171248 /DB_XREF=UI-R-BT1-akj-b-09-0-UI.s1 /CLONE=UI-R-BT1-akj-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.47023.1 /TIER=ConsEnd /STK=2 /UG=Rn.47023 /UG_TITLE=ESTs AW528834 1392396_at BG380027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380027 /DB_XREF=gi:13304499 /DB_XREF=UI-R-CS0-btl-b-04-0-UI.s1 /CLONE=UI-R-CS0-btl-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.66712.1 /TIER=ConsEnd /STK=2 /UG=Rn.66712 /UG_TITLE=ESTs, Highly similar to MAN1 RAT ALPHA-MANNOSIDASE (R.norvegicus) BG380027 mannosidase, alpha, class 2C, member 1 Man2c1 246136 NM_139256 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006013 // mannose metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // non-traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004559 // alpha-mannosidase activity // inferred from direct assay /// 0004559 // alpha-mannosidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0015923 // mannosidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392397_at BF389365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389365 /DB_XREF=gi:11374195 /DB_XREF=UI-R-BS2-bdj-a-03-0-UI.s1 /CLONE=UI-R-BS2-bdj-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.45626.1 /TIER=ConsEnd /STK=2 /UG=Rn.45626 /UG_TITLE=ESTs BF389365 1392398_at BE099964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099964 /DB_XREF=gi:8491848 /DB_XREF=UI-R-BJ1-atr-b-08-0-UI.s1 /CLONE=UI-R-BJ1-atr-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.27187.1 /TIER=ConsEnd /STK=2 /UG=Rn.27187 /UG_TITLE=ESTs BE099964 1392399_at BG377835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377835 /DB_XREF=gi:13302307 /DB_XREF=UI-R-CU0-bvf-g-03-0-UI.s1 /CLONE=UI-R-CU0-bvf-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.41457.1 /TIER=ConsEnd /STK=2 /UG=Rn.41457 /UG_TITLE=ESTs, Weakly similar to T27863 hypothetical protein ZK430.7 - Caenorhabditis elegans (C.elegans) BG377835 DDB1 and CUL4 associated factor 13 Dcaf13 362902 NM_001173558 /// XM_001061920 /// XM_001081959 0080008 // CUL4 RING ubiquitin ligase complex // inferred from electronic annotation /// 0080008 // CUL4 RING ubiquitin ligase complex // not recorded 1392400_at AI764065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764065 /DB_XREF=gi:5210000 /DB_XREF=UI-R-Y0-acy-d-10-0-UI.s1 /CLONE=UI-R-Y0-acy-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.44333.1 /TIER=ConsEnd /STK=2 /UG=Rn.44333 /UG_TITLE=ESTs AI764065 glomulin, FKBP associated protein Glmn 289437 NM_001105993 0001570 // vasculogenesis // not recorded /// 0040029 // regulation of gene expression, epigenetic // not recorded /// 0042130 // negative regulation of T cell proliferation // not recorded /// 0042327 // positive regulation of phosphorylation // not recorded /// 0042692 // muscle cell differentiation // not recorded /// 0045086 // positive regulation of interleukin-2 biosynthetic process // not recorded /// 0050715 // positive regulation of cytokine secretion // not recorded 0005171 // hepatocyte growth factor receptor binding // not recorded /// 0005515 // protein binding // not recorded 1392401_s_at AI535411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535411 /DB_XREF=gi:4449546 /DB_XREF=UI-R-C3-si-f-11-0-UI.s1 /CLONE=UI-R-C3-si-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.52442.1 /TIER=ConsEnd /STK=2 /UG=Rn.52442 /UG_TITLE=ESTs, Highly similar to MYOSIN HEAVY CHAIN, CARDIAC MUSCLE BETA ISOFORM (R.norvegicus) AI535411 Neuroguidin, EIF4E binding protein Ngdn 305887 NM_001107263 1392402_at BF417576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417576 /DB_XREF=gi:11405565 /DB_XREF=UI-R-CN0-blp-g-02-0-UI.s1 /CLONE=UI-R-CN0-blp-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.82422.1 /TIER=ConsEnd /STK=2 /UG=Rn.82422 /UG_TITLE=ESTs BF417576 hypothetical protein LOC100361455 LOC100361455 100361455 XM_002726010 /// XM_002729068 1392403_at BF386907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386907 /DB_XREF=gi:11371731 /DB_XREF=UI-R-CA1-bbj-a-02-0-UI.s1 /CLONE=UI-R-CA1-bbj-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.34662.1 /TIER=ConsEnd /STK=2 /UG=Rn.34662 /UG_TITLE=ESTs BF386907 1392404_at H33111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33111 /DB_XREF=gi:978528 /DB_XREF=EST108808 /CLONE=RPNAH49 /FEA=EST /CNT=2 /TID=Rn.79473.1 /TIER=ConsEnd /STK=2 /UG=Rn.79473 /UG_TITLE=ESTs H33111 1392405_at AI177322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177322 /DB_XREF=gi:3727960 /DB_XREF=EST220940 /CLONE=RPLBX48 /FEA=EST /CNT=2 /TID=Rn.81617.1 /TIER=ConsEnd /STK=2 /UG=Rn.81617 /UG_TITLE=ESTs AI177322 transcription factor Dp-2 (E2F dimerization partner 2) Tfdp2 300947 NM_001106847 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007507 // heart development // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0019904 // protein domain specific binding // inferred from electronic annotation 1392406_at BE120827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120827 /DB_XREF=gi:8512932 /DB_XREF=UI-R-BS1-azt-a-02-0-UI.s1 /CLONE=UI-R-BS1-azt-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.47908.1 /TIER=ConsEnd /STK=2 /UG=Rn.47908 /UG_TITLE=ESTs BE120827 intracisternal A particle-promoted polypeptide Ipp 298439 NM_001106679 0005515 // protein binding // inferred from electronic annotation 1392407_at AI012031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012031 /DB_XREF=gi:3225863 /DB_XREF=EST206482 /CLONE=RPLAR81 /FEA=EST /CNT=2 /TID=Rn.32174.1 /TIER=ConsEnd /STK=2 /UG=Rn.32174 /UG_TITLE=ESTs AI012031 1392408_at BI297463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297463 /DB_XREF=gi:14962863 /DB_XREF=UI-R-CV2-chc-f-01-0-UI.s1 /CLONE=UI-R-CV2-chc-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.66241.1 /TIER=ConsEnd /STK=2 /UG=Rn.66241 /UG_TITLE=ESTs BI297463 1392409_at AA957756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957756 /DB_XREF=gi:4277646 /DB_XREF=UI-R-E1-gc-d-10-0-UI.s1 /CLONE=UI-R-E1-gc-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.23173.2 /TIER=ConsEnd /STK=2 /UG=Rn.23173 /UG_TITLE=ESTs AA957756 1392410_at AI603414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI603414 /DB_XREF=gi:4612575 /DB_XREF=UI-R-AC1-xu-a-12-0-UI.s1 /CLONE=UI-R-AC1-xu-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.40156.1 /TIER=ConsEnd /STK=2 /UG=Rn.40156 /UG_TITLE=ESTs, Weakly similar to T17285 hypothetical protein DKFZp434N0535.1 (H.sapiens) AI603414 similar to mKIAA0978 protein RGD1561878 311553 XM_002726270 /// XM_002729218 1392411_at AI411848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411848 /DB_XREF=gi:4255352 /DB_XREF=EST240142 /CLONE=RKIEV49 /FEA=EST /CNT=2 /TID=Rn.43851.1 /TIER=ConsEnd /STK=2 /UG=Rn.43851 /UG_TITLE=ESTs, Weakly similar to A Chain A, Thiol Protease Mol id: 1 (R.norvegicus) AI411848 tubulointerstitial nephritis antigen Tinag 300846 NM_001005549 0006508 // proteolysis // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0030247 // polysaccharide binding // inferred from electronic annotation 1392412_at BE120096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120096 /DB_XREF=gi:8512201 /DB_XREF=UI-R-CA0-bak-e-07-0-UI.s1 /CLONE=UI-R-CA0-bak-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.50907.1 /TIER=ConsEnd /STK=2 /UG=Rn.50907 /UG_TITLE=ESTs BE120096 1392413_at BE111448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111448 /DB_XREF=gi:8503553 /DB_XREF=UI-R-BJ1-avb-a-01-0-UI.s1 /CLONE=UI-R-BJ1-avb-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.45676.1 /TIER=ConsEnd /STK=2 /UG=Rn.45676 /UG_TITLE=ESTs BE111448 1392414_at AI555147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555147 /DB_XREF=gi:4487510 /DB_XREF=UI-R-C2p-qt-d-02-0-UI.s1 /CLONE=UI-R-C2p-qt-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.43754.1 /TIER=ConsEnd /STK=2 /UG=Rn.43754 /UG_TITLE=ESTs AI555147 1392415_at AI599383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599383 /DB_XREF=gi:4608431 /DB_XREF=EST251086 /CLONE=REMEO45 /FEA=EST /CNT=2 /TID=Rn.19787.1 /TIER=ConsEnd /STK=2 /UG=Rn.19787 /UG_TITLE=ESTs AI599383 1392416_at AI410749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410749 /DB_XREF=gi:4254253 /DB_XREF=EST239042 /CLONE=RHECT36 /FEA=EST /CNT=2 /TID=Rn.12549.1 /TIER=ConsEnd /STK=2 /UG=Rn.12549 /UG_TITLE=ESTs AI410749 1392417_s_at AI711481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711481 /DB_XREF=gi:5001257 /DB_XREF=UI-R-AA1-zy-e-03-0-UI.s1 /CLONE=UI-R-AA1-zy-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.44939.1 /TIER=ConsEnd /STK=2 /UG=Rn.44939 /UG_TITLE=ESTs AI711481 similar to TP53-regulating kinase (p53-related protein kinase) (Nori-2) /// TP53 regulating kinase LOC685619 /// Trp53rk 362272 /// 685619 NM_001108606 /// XM_002729250 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0016020 // membrane // inferred from electronic annotation 0002039 // p53 binding // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation 1392418_at BE105603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105603 /DB_XREF=gi:8497705 /DB_XREF=UI-R-BX0-ash-g-11-0-UI.s1 /CLONE=UI-R-BX0-ash-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.49224.1 /TIER=ConsEnd /STK=2 /UG=Rn.49224 /UG_TITLE=ESTs BE105603 Mitogen-activated protein kinase 8 Mapk8 116554 XM_001056513 /// XM_341399 0001503 // ossification // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006915 // apoptosis // not recorded /// 0006954 // inflammatory response // inferred from direct assay /// 0006970 // response to osmotic stress // inferred from direct assay /// 0007165 // signal transduction // inferred from direct assay /// 0007254 // JNK cascade // not recorded /// 0007254 // JNK cascade // inferred from sequence or structural similarity /// 0007254 // JNK cascade // inferred from electronic annotation /// 0007258 // JUN phosphorylation // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0009408 // response to heat // inferred from direct assay /// 0009411 // response to UV // not recorded /// 0018107 // peptidyl-threonine phosphorylation // not recorded /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0031116 // positive regulation of microtubule polymerization // inferred from mutant phenotype /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0031558 // induction of apoptosis in response to chemical stimulus // not recorded /// 0042542 // response to hydrogen peroxide // inferred from direct assay /// 0043065 // positive regulation of apoptosis // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0043066 // negative regulation of apoptosis // not recorded /// 0045740 // positive regulation of DNA replication // inferred from mutant phenotype /// 0046686 // response to cadmium ion // not recorded /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0032839 // dendrite cytoplasm // inferred from direct assay /// 0033267 // axon part // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004705 // JUN kinase activity // inferred from direct assay /// 0004705 // JUN kinase activity // not recorded /// 0004705 // JUN kinase activity // inferred from sequence or structural similarity /// 0004705 // JUN kinase activity // traceable author statement /// 0004705 // JUN kinase activity // inferred from electronic annotation /// 0004707 // MAP kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1392419_at BF411806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411806 /DB_XREF=gi:11399795 /DB_XREF=UI-R-BT1-bmw-d-08-0-UI.s1 /CLONE=UI-R-BT1-bmw-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.61927.1 /TIER=ConsEnd /STK=2 /UG=Rn.61927 /UG_TITLE=ESTs BF411806 similar to RIKEN cDNA 4930549C01 RGD1311870 298563 XM_001069522 /// XM_216550 1392420_at BF409169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409169 /DB_XREF=gi:11397144 /DB_XREF=UI-R-BT1-bkm-g-08-0-UI.s1 /CLONE=UI-R-BT1-bkm-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.61270.1 /TIER=ConsEnd /STK=2 /UG=Rn.61270 /UG_TITLE=ESTs BF409169 1392421_at AW526570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526570 /DB_XREF=gi:7168984 /DB_XREF=UI-R-BO1-ajc-e-11-0-UI.s1 /CLONE=UI-R-BO1-ajc-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.46240.1 /TIER=ConsEnd /STK=2 /UG=Rn.46240 /UG_TITLE=ESTs AW526570 Bromodomain adjacent to zinc finger domain, 2B Baz2b 317627 NM_001108260 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392422_at AI236397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236397 /DB_XREF=gi:3829903 /DB_XREF=EST232959 /CLONE=ROVDF17 /FEA=EST /CNT=2 /TID=Rn.21661.1 /TIER=ConsEnd /STK=2 /UG=Rn.21661 /UG_TITLE=ESTs AI236397 asparagine-linked glycosylation 9, alpha-1,2-mannosyltransferase homolog (S. cerevisiae) Alg9 367083 NM_001109000 0006506 // GPI anchor biosynthetic process // inferred from electronic annotation 0031227 // intrinsic to endoplasmic reticulum membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1392423_at AI602137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602137 /DB_XREF=gi:4611298 /DB_XREF=UI-R-Y0-vb-f-04-0-UI.s2 /CLONE=UI-R-Y0-vb-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.44922.1 /TIER=ConsEnd /STK=2 /UG=Rn.44922 /UG_TITLE=ESTs AI602137 1392424_at BF407028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407028 /DB_XREF=gi:11395003 /DB_XREF=UI-R-BJ2-bpq-g-11-0-UI.s1 /CLONE=UI-R-BJ2-bpq-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.61006.1 /TIER=ConsEnd /STK=2 /UG=Rn.61006 /UG_TITLE=ESTs BF407028 1392425_x_at BI275713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275713 /DB_XREF=gi:14919906 /DB_XREF=UI-R-CW0-bwm-h-02-0-UI.s1 /CLONE=UI-R-CW0-bwm-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.35422.1 /TIER=ConsEnd /STK=2 /UG=Rn.35422 /UG_TITLE=ESTs BI275713 LUC7-like (S. cerevisiae) Luc7l 360503 NM_001024269 0009168 // purine ribonucleoside monophosphate biosynthetic process // inferred from electronic annotation 0019239 // deaminase activity // inferred from electronic annotation 1392426_x_at AI175320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175320 /DB_XREF=gi:3725958 /DB_XREF=EST218860 /CLONE=RMUCG91 /FEA=EST /CNT=2 /TID=Rn.43741.1 /TIER=ConsEnd /STK=2 /UG=Rn.43741 /UG_TITLE=ESTs AI175320 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4 Nfatc4 305897 NM_001107264 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0045333 // cellular respiration // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // inferred from mutant phenotype 0005634 // nucleus // inferred from mutant phenotype /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from mutant phenotype 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1392427_at BE097310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097310 /DB_XREF=gi:8488241 /DB_XREF=UI-R-BO1-apv-h-01-0-UI.s1 /CLONE=UI-R-BO1-apv-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.63141.1 /TIER=ConsEnd /STK=2 /UG=Rn.63141 /UG_TITLE=ESTs BE097310 1392428_at BE100899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100899 /DB_XREF=gi:8492800 /DB_XREF=UI-R-BJ1-atx-g-06-0-UI.s1 /CLONE=UI-R-BJ1-atx-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.50006.1 /TIER=ConsEnd /STK=2 /UG=Rn.50006 /UG_TITLE=ESTs, Weakly similar to YP65_CAEEL HYPOTHETICAL 81.5 KD PROTEIN B0495.5 IN CHROMOSOME II (C.elegans) BE100899 spermatogenesis associated 20 Spata20 360604 NM_199402 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // non-traceable author statement /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392429_at BF387478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387478 /DB_XREF=gi:11372302 /DB_XREF=UI-R-CA1-bbm-h-06-0-UI.s1 /CLONE=UI-R-CA1-bbm-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.61832.1 /TIER=ConsEnd /STK=2 /UG=Rn.61832 /UG_TITLE=ESTs, Moderately similar to 1709138A fumarase (R.norvegicus) BF387478 1392430_at AW525096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525096 /DB_XREF=gi:7167481 /DB_XREF=UI-R-BJ0p-aim-g-06-0-UI.s1 /CLONE=UI-R-BJ0p-aim-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.44918.1 /TIER=ConsEnd /STK=2 /UG=Rn.44918 /UG_TITLE=ESTs AW525096 1392431_at BE103060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103060 /DB_XREF=gi:8495159 /DB_XREF=UI-R-BT1-aqw-b-01-0-UI.s1 /CLONE=UI-R-BT1-aqw-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.56967.1 /TIER=ConsEnd /STK=2 /UG=Rn.56967 /UG_TITLE=ESTs BE103060 1392432_at AA998022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998022 /DB_XREF=gi:4286969 /DB_XREF=UI-R-C0-hx-f-06-0-UI.s1 /CLONE=UI-R-C0-hx-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.37620.1 /TIER=ConsEnd /STK=2 /UG=Rn.37620 /UG_TITLE=ESTs AA998022 Fibroblast growth factor 10 Fgf10 25443 NM_012951 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0001525 // angiogenesis // inferred from expression pattern /// 0001656 // metanephros development // inferred from electronic annotation /// 0001656 // metanephros development // not recorded /// 0001759 // organ induction // inferred from direct assay /// 0001759 // organ induction // not recorded /// 0001759 // organ induction // inferred from electronic annotation /// 0001823 // mesonephros development // inferred from electronic annotation /// 0001823 // mesonephros development // not recorded /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0001974 // blood vessel remodeling // not recorded /// 0003338 // metanephros morphogenesis // not recorded /// 0006935 // chemotaxis // not recorded /// 0006935 // chemotaxis // inferred from electronic annotation /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // not recorded /// 0007431 // salivary gland development // not recorded /// 0007431 // salivary gland development // inferred from electronic annotation /// 0007435 // salivary gland morphogenesis // not recorded /// 0007435 // salivary gland morphogenesis // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0008544 // epidermis development // not recorded /// 0008544 // epidermis development // inferred from electronic annotation /// 0008589 // regulation of smoothened signaling pathway // inferred from electronic annotation /// 0008589 // regulation of smoothened signaling pathway // not recorded /// 0009880 // embryonic pattern specification // inferred from electronic annotation /// 0009880 // embryonic pattern specification // not recorded /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010631 // epithelial cell migration // not recorded /// 0010631 // epithelial cell migration // inferred from electronic annotation /// 0010634 // positive regulation of epithelial cell migration // inferred from electronic annotation /// 0010634 // positive regulation of epithelial cell migration // not recorded /// 0010838 // positive regulation of keratinocyte proliferation // inferred from electronic annotation /// 0010838 // positive regulation of keratinocyte proliferation // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0021983 // pituitary gland development // not recorded /// 0030154 // cell differentiation // inferred from expression pattern /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0030177 // positive regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030538 // embryonic genitalia morphogenesis // inferred from electronic annotation /// 0030538 // embryonic genitalia morphogenesis // not recorded /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0030878 // thyroid gland development // not recorded /// 0030916 // otic vesicle formation // inferred from electronic annotation /// 0030916 // otic vesicle formation // not recorded /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0031016 // pancreas development // inferred from electronic annotation /// 0031016 // pancreas development // not recorded /// 0031069 // hair follicle morphogenesis // not recorded /// 0031076 // embryonic camera-type eye development // inferred from electronic annotation /// 0031076 // embryonic camera-type eye development // not recorded /// 0031532 // actin cytoskeleton reorganization // inferred from electronic annotation /// 0031532 // actin cytoskeleton reorganization // not recorded /// 0031659 // positive regulation of cyclin-dependent protein kinase activity involved in G1/S // inferred from electronic annotation /// 0031659 // positive regulation of cyclin-dependent protein kinase activity involved in G1/S // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032781 // positive regulation of ATPase activity // inferred from electronic annotation /// 0032781 // positive regulation of ATPase activity // not recorded /// 0032808 // lacrimal gland development // inferred from electronic annotation /// 0032808 // lacrimal gland development // not recorded /// 0032925 // regulation of activin receptor signaling pathway // inferred from electronic annotation /// 0032925 // regulation of activin receptor signaling pathway // not recorded /// 0034394 // protein localization at cell surface // inferred from electronic annotation /// 0034394 // protein localization at cell surface // not recorded /// 0035019 // somatic stem cell maintenance // inferred from electronic annotation /// 0035019 // somatic stem cell maintenance // not recorded /// 0035108 // limb morphogenesis // not recorded /// 0035108 // limb morphogenesis // inferred from electronic annotation /// 0035265 // organ growth // inferred from electronic annotation /// 0035265 // organ growth // not recorded /// 0042060 // wound healing // not recorded /// 0042060 // wound healing // inferred from electronic annotation /// 0042246 // tissue regeneration // inferred from expression pattern /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042693 // muscle cell fate commitment // inferred from electronic annotation /// 0042693 // muscle cell fate commitment // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043616 // keratinocyte proliferation // not recorded /// 0043616 // keratinocyte proliferation // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045739 // positive regulation of DNA repair // inferred from electronic annotation /// 0045739 // positive regulation of DNA repair // not recorded /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // not recorded /// 0045747 // positive regulation of Notch signaling pathway // inferred from electronic annotation /// 0045747 // positive regulation of Notch signaling pathway // not recorded /// 0045931 // positive regulation of mitotic cell cycle // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0046877 // regulation of saliva secretion // inferred from electronic annotation /// 0046877 // regulation of saliva secretion // not recorded /// 0048146 // positive regulation of fibroblast proliferation // inferred from electronic annotation /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0048286 // lung alveolus development // not recorded /// 0048286 // lung alveolus development // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // not recorded /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048536 // spleen development // inferred from electronic annotation /// 0048536 // spleen development // not recorded /// 0048538 // thymus development // inferred from electronic annotation /// 0048538 // thymus development // not recorded /// 0048557 // embryonic digestive tract morphogenesis // inferred from electronic annotation /// 0048557 // embryonic digestive tract morphogenesis // not recorded /// 0048565 // digestive tract development // not recorded /// 0048565 // digestive tract development // inferred from electronic annotation /// 0048566 // embryonic digestive tract development // not recorded /// 0048566 // embryonic digestive tract development // inferred from electronic annotation /// 0048645 // organ formation // not recorded /// 0048730 // epidermis morphogenesis // inferred from electronic annotation /// 0048730 // epidermis morphogenesis // not recorded /// 0048752 // semicircular canal morphogenesis // not recorded /// 0048754 // branching morphogenesis of a tube // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048807 // female genitalia morphogenesis // inferred from electronic annotation /// 0048807 // female genitalia morphogenesis // not recorded /// 0048808 // male genitalia morphogenesis // inferred from electronic annotation /// 0048808 // male genitalia morphogenesis // not recorded /// 0050671 // positive regulation of lymphocyte proliferation // inferred from electronic annotation /// 0050671 // positive regulation of lymphocyte proliferation // not recorded /// 0050673 // epithelial cell proliferation // not recorded /// 0050673 // epithelial cell proliferation // inferred from electronic annotation /// 0050674 // urothelial cell proliferation // not recorded /// 0050674 // urothelial cell proliferation // inferred from electronic annotation /// 0050677 // positive regulation of urothelial cell proliferation // not recorded /// 0050677 // positive regulation of urothelial cell proliferation // inferred from sequence or structural similarity /// 0050677 // positive regulation of urothelial cell proliferation // inferred from electronic annotation /// 0050678 // regulation of epithelial cell proliferation // not recorded /// 0050678 // regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050872 // white fat cell differentiation // inferred from electronic annotation /// 0050872 // white fat cell differentiation // not recorded /// 0050918 // positive chemotaxis // not recorded /// 0050918 // positive chemotaxis // inferred from electronic annotation /// 0050930 // induction of positive chemotaxis // inferred from electronic annotation /// 0050930 // induction of positive chemotaxis // not recorded /// 0051145 // smooth muscle cell differentiation // inferred from electronic annotation /// 0051145 // smooth muscle cell differentiation // not recorded /// 0051549 // positive regulation of keratinocyte migration // inferred from electronic annotation /// 0051549 // positive regulation of keratinocyte migration // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded /// 0060019 // radial glial cell differentiation // inferred from electronic annotation /// 0060019 // radial glial cell differentiation // not recorded /// 0060173 // limb development // not recorded /// 0060173 // limb development // inferred from electronic annotation /// 0060174 // limb bud formation // inferred from electronic annotation /// 0060174 // limb bud formation // not recorded /// 0060425 // lung morphogenesis // not recorded /// 0060425 // lung morphogenesis // inferred from electronic annotation /// 0060428 // lung epithelium development // inferred from electronic annotation /// 0060428 // lung epithelium development // not recorded /// 0060430 // lung saccule development // inferred from electronic annotation /// 0060430 // lung saccule development // not recorded /// 0060436 // bronchiole morphogenesis // inferred from electronic annotation /// 0060436 // bronchiole morphogenesis // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // not recorded /// 0060441 // epithelial tube branching involved in lung morphogenesis // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // not recorded /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060447 // bud outgrowth involved in lung branching // inferred from electronic annotation /// 0060447 // bud outgrowth involved in lung branching // not recorded /// 0060496 // mesenchymal-epithelial cell signaling involved in lung development // inferred from electronic annotation /// 0060496 // mesenchymal-epithelial cell signaling involved in lung development // not recorded /// 0060510 // Type II pneumocyte differentiation // inferred from electronic annotation /// 0060510 // Type II pneumocyte differentiation // not recorded /// 0060541 // respiratory system development // not recorded /// 0060541 // respiratory system development // inferred from electronic annotation /// 0060594 // mammary gland specification // not recorded /// 0060594 // mammary gland specification // inferred from electronic annotation /// 0060595 // fibroblast growth factor receptor signaling pathway involved in mammary gland specification // inferred from electronic annotation /// 0060595 // fibroblast growth factor receptor signaling pathway involved in mammary gland specification // not recorded /// 0060615 // mammary gland bud formation // inferred from electronic annotation /// 0060615 // mammary gland bud formation // not recorded /// 0060661 // submandibular salivary gland formation // not recorded /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // not recorded /// 0060665 // regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling // inferred from electronic annotation /// 0060665 // regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling // not recorded /// 0060667 // branch elongation involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060667 // branch elongation involved in salivary gland morphogenesis // not recorded /// 0060685 // regulation of prostatic bud formation // inferred from electronic annotation /// 0060685 // regulation of prostatic bud formation // not recorded /// 0060879 // semicircular canal fusion // inferred from electronic annotation /// 0060879 // semicircular canal fusion // not recorded /// 0060915 // mesenchymal cell differentiation involved in lung development // inferred from electronic annotation /// 0060915 // mesenchymal cell differentiation involved in lung development // not recorded /// 0061033 // secretion by lung epithelial cell involved in lung growth // inferred from electronic annotation /// 0061033 // secretion by lung epithelial cell involved in lung growth // not recorded /// 0061115 // lung proximal/distal axis specification // inferred from electronic annotation /// 0061115 // lung proximal/distal axis specification // not recorded /// 0070075 // tear secretion // inferred from electronic annotation /// 0070075 // tear secretion // not recorded /// 0070352 // positive regulation of white fat cell proliferation // inferred from electronic annotation /// 0070352 // positive regulation of white fat cell proliferation // not recorded /// 0070371 // ERK1 and ERK2 cascade // not recorded /// 0070371 // ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from electronic annotation /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded /// 0070384 // Harderian gland development // inferred from electronic annotation /// 0070384 // Harderian gland development // not recorded /// 0071157 // negative regulation of cell cycle arrest // inferred from electronic annotation /// 0071157 // negative regulation of cell cycle arrest // not recorded /// 0071338 // positive regulation of hair follicle cell proliferation // inferred from electronic annotation /// 0071338 // positive regulation of hair follicle cell proliferation // not recorded /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0005104 // fibroblast growth factor receptor binding // not recorded /// 0005104 // fibroblast growth factor receptor binding // inferred from sequence or structural similarity /// 0005104 // fibroblast growth factor receptor binding // traceable author statement /// 0005104 // fibroblast growth factor receptor binding // inferred from electronic annotation /// 0005111 // type 2 fibroblast growth factor receptor binding // inferred from electronic annotation /// 0005111 // type 2 fibroblast growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0008201 // heparin binding // not recorded /// 0008201 // heparin binding // inferred from sequence or structural similarity /// 0008201 // heparin binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0042056 // chemoattractant activity // inferred from electronic annotation /// 0042056 // chemoattractant activity // not recorded 1392433_at BF393447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393447 /DB_XREF=gi:11378308 /DB_XREF=UI-R-CA0-bfu-a-08-0-UI.s1 /CLONE=UI-R-CA0-bfu-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.57384.1 /TIER=ConsEnd /STK=2 /UG=Rn.57384 /UG_TITLE=ESTs BF393447 1392434_at AI410789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410789 /DB_XREF=gi:4254293 /DB_XREF=EST239082 /CLONE=RHECT29 /FEA=EST /CNT=2 /TID=Rn.61021.1 /TIER=ConsEnd /STK=2 /UG=Rn.61021 /UG_TITLE=ESTs AI410789 1392435_at AI072744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072744 /DB_XREF=gi:3398938 /DB_XREF=UI-R-Y0-md-b-03-0-UI.s1 /CLONE=UI-R-Y0-md-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.21809.1 /TIER=ConsEnd /STK=2 /UG=Rn.21809 /UG_TITLE=ESTs AI072744 heat shock protein family, member 7 (cardiovascular) Hspb7 50565 NM_031607 0006950 // response to stress // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0009408 // response to heat // inferred from direct assay /// 0009408 // response to heat // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0015030 // Cajal body // inferred from electronic annotation 0005515 // protein binding // not recorded 1392436_at AI180303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180303 /DB_XREF=gi:3730941 /DB_XREF=EST224046 /CLONE=RSPCT08 /FEA=EST /CNT=2 /TID=Rn.19526.1 /TIER=ConsEnd /STK=2 /UG=Rn.19526 /UG_TITLE=ESTs, Weakly similar to VAV RAT VAV PROTO-ONCOGENE (R.norvegicus) AI180303 Phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 Prex1 311647 NM_001135718 0006915 // apoptosis // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030833 // regulation of actin filament polymerization // inferred from mutant phenotype /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0050773 // regulation of dendrite development // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005543 // phospholipid binding // not recorded 1392437_at AI070159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070159 /DB_XREF=gi:3396410 /DB_XREF=UI-R-C1-lp-b-08-0-UI.s1 /CLONE=UI-R-C1-lp-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.49458.1 /TIER=ConsEnd /STK=2 /UG=Rn.49458 /UG_TITLE=ESTs, Weakly similar to T16005 hypothetical protein F09E5.2 - Caenorhabditis elegans (C.elegans) AI070159 asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae) Alg2 313231 NM_001100710 0006488 // dolichol-linked oligosaccharide biosynthetic process // inferred from electronic annotation /// 0006488 // dolichol-linked oligosaccharide biosynthetic process // not recorded /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0033577 // protein glycosylation in endoplasmic reticulum // inferred from electronic annotation /// 0033577 // protein glycosylation in endoplasmic reticulum // not recorded /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0000033 // alpha-1,3-mannosyltransferase activity // inferred from electronic annotation /// 0000033 // alpha-1,3-mannosyltransferase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0043495 // protein anchor // inferred from electronic annotation /// 0043495 // protein anchor // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded 1392438_at AI576024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576024 /DB_XREF=gi:4560400 /DB_XREF=UI-R-G0-uo-a-09-0-UI.s1 /CLONE=UI-R-G0-uo-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.44900.1 /TIER=ConsEnd /STK=2 /UG=Rn.44900 /UG_TITLE=ESTs AI576024 TSC22 domain family, member 1 Tsc22d1 498545 NM_001109912 /// NM_013043 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1392439_at AW527871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527871 /DB_XREF=gi:7170285 /DB_XREF=UI-R-BT1-akb-b-04-0-UI.s1 /CLONE=UI-R-BT1-akb-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.46688.1 /TIER=ConsEnd /STK=2 /UG=Rn.46688 /UG_TITLE=ESTs AW527871 1392440_at AI072122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072122 /DB_XREF=gi:3398316 /DB_XREF=UI-R-C2-nf-h-02-0-UI.s1 /CLONE=UI-R-C2-nf-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.20064.1 /TIER=ConsEnd /STK=2 /UG=Rn.20064 /UG_TITLE=ESTs AI072122 1392441_at BF415891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415891 /DB_XREF=gi:11403880 /DB_XREF=UI-R-CA0-bkg-c-07-0-UI.s1 /CLONE=UI-R-CA0-bkg-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.63945.1 /TIER=ConsEnd /STK=2 /UG=Rn.63945 /UG_TITLE=ESTs BF415891 zinc finger E-box binding homeobox 2 Zeb2 311071 NM_001033701 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001756 // somitogenesis // not recorded /// 0001843 // neural tube closure // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0021846 // cell proliferation in forebrain // inferred from electronic annotation /// 0021846 // cell proliferation in forebrain // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0030177 // positive regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0043507 // positive regulation of JUN kinase activity // inferred from electronic annotation /// 0043507 // positive regulation of JUN kinase activity // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048598 // embryonic morphogenesis // inferred from electronic annotation /// 0048598 // embryonic morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1392442_at BE109868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109868 /DB_XREF=gi:8501973 /DB_XREF=UI-R-CA0-axi-c-09-0-UI.s1 /CLONE=UI-R-CA0-axi-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.26702.1 /TIER=ConsEnd /STK=2 /UG=Rn.26702 /UG_TITLE=ESTs BE109868 1392443_at BE096522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096522 /DB_XREF=gi:8487453 /DB_XREF=UI-R-BU0-aph-b-05-0-UI.s1 /CLONE=UI-R-BU0-aph-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.49162.1 /TIER=ConsEnd /STK=2 /UG=Rn.49162 /UG_TITLE=ESTs BE096522 1392444_at AW531000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531000 /DB_XREF=gi:7173414 /DB_XREF=UI-R-BT1-akt-e-05-0-UI.s1 /CLONE=UI-R-BT1-akt-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.15184.1 /TIER=ConsEnd /STK=2 /UG=Rn.15184 /UG_TITLE=ESTs AW531000 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5 Chst5 307859 NM_001107431 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006044 // N-acetylglucosamine metabolic process // not recorded /// 0006790 // sulfur compound metabolic process // not recorded /// 0018146 // keratan sulfate biosynthetic process // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0001517 // N-acetylglucosamine 6-O-sulfotransferase activity // not recorded /// 0008146 // sulfotransferase activity // inferred from electronic annotation 1392445_at BE121428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121428 /DB_XREF=gi:8513533 /DB_XREF=UI-R-CA0-bax-g-02-0-UI.s1 /CLONE=UI-R-CA0-bax-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.61360.1 /TIER=ConsEnd /STK=2 /UG=Rn.61360 /UG_TITLE=ESTs BE121428 1392446_at AI145435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145435 /DB_XREF=gi:3667234 /DB_XREF=UI-R-BT0-pv-b-09-0-UI.s1 /CLONE=UI-R-BT0-pv-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.28475.1 /TIER=ConsEnd /STK=2 /UG=Rn.28475 /UG_TITLE=ESTs AI145435 kelch-like 2, Mayven (Drosophila) Klhl2 290692 XM_001073589 /// XM_214331 0005515 // protein binding // inferred from electronic annotation 1392447_at AI073058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073058 /DB_XREF=gi:3399252 /DB_XREF=UI-R-Y0-lx-d-04-0-UI.s1 /CLONE=UI-R-Y0-lx-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.20342.1 /TIER=ConsEnd /STK=2 /UG=Rn.20342 /UG_TITLE=ESTs AI073058 1392448_at AA955519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955519 /DB_XREF=gi:4237914 /DB_XREF=UI-R-E1-fa-e-06-0-UI.s1 /CLONE=UI-R-E1-fa-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.40607.1 /TIER=ConsEnd /STK=2 /UG=Rn.40607 /UG_TITLE=ESTs AA955519 1392449_at BI282152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282152 /DB_XREF=gi:14932614 /DB_XREF=UI-R-CU0s-cbx-c-01-0-UI.s1 /CLONE=UI-R-CU0s-cbx-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.45358.1 /TIER=ConsEnd /STK=2 /UG=Rn.45358 /UG_TITLE=ESTs BI282152 RAD18 homolog (S. cerevisiae) Rad18 362412 NM_001077673 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0007283 // spermatogenesis // not recorded /// 0009411 // response to UV // not recorded /// 0045910 // negative regulation of DNA recombination // not recorded 0000785 // chromatin // not recorded /// 0001741 // XY body // not recorded /// 0005634 // nucleus // not recorded /// 0005657 // replication fork // not recorded 0000403 // Y-form DNA binding // not recorded /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1392450_at BF419910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419910 /DB_XREF=gi:11407899 /DB_XREF=UI-R-BJ2-bph-f-04-0-UI.s1 /CLONE=UI-R-BJ2-bph-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.64069.1 /TIER=ConsEnd /STK=2 /UG=Rn.64069 /UG_TITLE=ESTs, Weakly similar to A54407 alpha-mannosidase (M.musculus) BF419910 ER degradation enhancer, mannosidase alpha-like 3 Edem3 289085 NM_001191671 /// XM_001070709 /// XM_222721 0006516 // glycoprotein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004569 // glycoprotein endo-alpha-1,2-mannosidase activity // not recorded /// 0004571 // mannosyl-oligosaccharide 1,2-alpha-mannosidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1392451_at BI293843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293843 /DB_XREF=gi:14955726 /DB_XREF=UI-R-DK0-cdl-e-10-0-UI.s1 /CLONE=UI-R-DK0-cdl-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.38724.1 /TIER=ConsEnd /STK=2 /UG=Rn.38724 /UG_TITLE=ESTs BI293843 hypothetical protein LOC691354 LOC691354 691354 XM_002726617 /// XM_002729572 1392452_at AI169548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169548 /DB_XREF=gi:3709588 /DB_XREF=EST215418 /CLONE=RKIBU23 /FEA=EST /CNT=2 /TID=Rn.12860.1 /TIER=ConsEnd /STK=2 /UG=Rn.12860 /UG_TITLE=ESTs AI169548 1392453_at AI763523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763523 /DB_XREF=gi:5209458 /DB_XREF=UI-R-Y0-abf-a-02-0-UI.s1 /CLONE=UI-R-Y0-abf-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.36168.2 /TIER=ConsEnd /STK=2 /UG=Rn.36168 /UG_TITLE=ESTs, Highly similar to CLC3 RAT CHLORIDE CHANNEL PROTEIN 3 (R.norvegicus) AI763523 chloride channel 3 Clcn3 84360 NM_053363 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from direct assay /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from direct assay /// 0006821 // chloride transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005622 // intracellular // inferred from direct assay /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from sequence or structural similarity /// 0005770 // late endosome // not recorded /// 0005770 // late endosome // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from direct assay /// 0012506 // vesicle membrane // not recorded /// 0012506 // vesicle membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030658 // transport vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from direct assay /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from direct assay /// 0005247 // voltage-gated chloride channel activity // inferred from direct assay /// 0005247 // voltage-gated chloride channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0015297 // antiporter activity // inferred from electronic annotation /// 0030165 // PDZ domain binding // not recorded /// 0030165 // PDZ domain binding // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // not recorded 1392454_at BI296999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296999 /DB_XREF=gi:14961976 /DB_XREF=UI-R-DK0-cgk-a-10-0-UI.s1 /CLONE=UI-R-DK0-cgk-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.47232.1 /TIER=ConsEnd /STK=2 /UG=Rn.47232 /UG_TITLE=ESTs BI296999 zinc finger, HIT type 6 Znhit6 292160 NM_001106203 0000492 // box C/D snoRNP assembly // inferred from electronic annotation /// 0000492 // box C/D snoRNP assembly // not recorded 0070761 // pre-snoRNP complex // inferred from electronic annotation /// 0070761 // pre-snoRNP complex // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1392455_at AI105452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105452 /DB_XREF=gi:3709529 /DB_XREF=EST214741 /CLONE=RKIBK57 /FEA=EST /CNT=2 /TID=Rn.23964.1 /TIER=ConsEnd /STK=2 /UG=Rn.23964 /UG_TITLE=ESTs, Weakly similar to T47167 hypothetical protein DKFZp762D185.1 (H.sapiens) AI105452 1392456_at BE112660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112660 /DB_XREF=gi:8504765 /DB_XREF=UI-R-BJ1-avj-c-08-0-UI.s1 /CLONE=UI-R-BJ1-avj-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.22206.2 /TIER=ConsEnd /STK=2 /UG=Rn.22206 /UG_TITLE=ESTs, Highly similar to KIAA0784 protein (H.sapiens) BE112660 Activity-dependent neuroprotector homeobox Adnp 64622 NM_022681 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007614 // short-term memory // inferred from direct assay /// 0009743 // response to carbohydrate stimulus // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010629 // negative regulation of gene expression // inferred from direct assay /// 0010835 // regulation of protein ADP-ribosylation // inferred from direct assay /// 0010976 // positive regulation of neuron projection development // inferred from direct assay /// 0030828 // positive regulation of cGMP biosynthetic process // inferred from direct assay /// 0031668 // cellular response to extracellular stimulus // inferred from expression pattern /// 0032091 // negative regulation of protein binding // inferred from direct assay /// 0032147 // activation of protein kinase activity // inferred from direct assay /// 0033484 // nitric oxide homeostasis // inferred from direct assay /// 0043524 // negative regulation of neuron apoptosis // inferred from direct assay /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043526 // neuroprotection // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045773 // positive regulation of axon extension // inferred from direct assay /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0050805 // negative regulation of synaptic transmission // inferred from mutant phenotype /// 0051965 // positive regulation of synaptogenesis // inferred from direct assay /// 0060206 // estrous cycle phase // inferred from expression pattern 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // inferred from physical interaction 1392457_x_at AA926290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926290 /DB_XREF=gi:4237481 /DB_XREF=UI-R-A1-el-e-02-0-UI.s1 /CLONE=UI-R-A1-el-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.15697.1 /TIER=ConsEnd /STK=2 /UG=Rn.15697 /UG_TITLE=ESTs AA926290 1392458_at AI059699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059699 /DB_XREF=gi:3333476 /DB_XREF=UI-R-C1-lg-h-08-0-UI.s1 /CLONE=UI-R-C1-lg-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.52409.1 /TIER=ConsEnd /STK=2 /UG=Rn.52409 /UG_TITLE=ESTs, Highly similar to C215_HUMAN 258.1 KDA PROTEIN C21ORF5 (H.sapiens) AI059699 Dopey family member 2 Dopey2 304077 NM_001191660 /// XM_001055500 /// XM_002724703 /// XM_002727866 /// XM_221640 1392459_x_at AI136271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136271 /DB_XREF=gi:3637048 /DB_XREF=UI-R-C2p-oa-b-04-0-UI.s1 /CLONE=UI-R-C2p-oa-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.23668.1 /TIER=ConsEnd /STK=2 /UG=Rn.23668 /UG_TITLE=ESTs AI136271 1392460_at BF283685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283685 /DB_XREF=gi:11214755 /DB_XREF=EST448276 /CLONE=RGIEF45 /FEA=EST /CNT=17 /TID=Rn.13545.1 /TIER=ConsEnd /STK=1 /UG=Rn.13545 /UG_TITLE=ESTs, Weakly similar to CIN_DROME Molybdenum cofactor synthesis protein cinnamon (D.melanogaster) BF283685 rCG50929-like LOC100365089 100365089 XM_002725441 0005739 // mitochondrion // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation 1392461_at BI291012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291012 /DB_XREF=gi:14950153 /DB_XREF=UI-R-DK0-cge-d-02-0-UI.s1 /CLONE=UI-R-DK0-cge-d-02-0-UI /FEA=EST /CNT=13 /TID=Rn.25206.1 /TIER=ConsEnd /STK=1 /UG=Rn.25206 /UG_TITLE=ESTs BI291012 PRP4 pre-mRNA processing factor 4 homolog (yeast) Prpf4 298095 NM_001106659 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0015030 // Cajal body // not recorded /// 0071001 // U4/U6 snRNP // not recorded 0005515 // protein binding // not recorded 1392462_at AA817891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817891 /DB_XREF=gi:4198415 /DB_XREF=UI-R-A0-af-c-08-0-UI.s2 /CLONE=UI-R-A0-af-c-08-0-UI /FEA=EST /CNT=16 /TID=Rn.17130.1 /TIER=ConsEnd /STK=1 /UG=Rn.17130 /UG_TITLE=ESTs AA817891 1392463_at AI576058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576058 /DB_XREF=gi:4560434 /DB_XREF=UI-R-G0-uo-f-03-0-UI.s1 /CLONE=UI-R-G0-uo-f-03-0-UI /FEA=EST /CNT=13 /TID=Rn.15441.1 /TIER=ConsEnd /STK=1 /UG=Rn.15441 /UG_TITLE=ESTs AI576058 MAP7 domain containing 2 Map7d2 317508 XM_001054594 /// XM_228973 1392464_at BM392372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392372 /DB_XREF=gi:18192425 /DB_XREF=UI-R-DO1-ckp-p-22-0-UI.s1 /CLONE=UI-R-DO1-ckp-p-22-0-UI /FEA=EST /CNT=12 /TID=Rn.14600.1 /TIER=ConsEnd /STK=1 /UG=Rn.14600 /UG_TITLE=ESTs, Weakly similar to budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae) (Mus musculus) (M.musculus) BM392372 RAE1 RNA export 1 homolog (S. pombe) Rae1 362281 NM_001033708 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 1392465_at AI228030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228030 /DB_XREF=gi:3811917 /DB_XREF=EST224725 /CLONE=RBRCP10 /FEA=EST /CNT=14 /TID=Rn.22688.1 /TIER=ConsEnd /STK=1 /UG=Rn.22688 /UG_TITLE=ESTs, Highly similar to Sin3-associated polypeptide 18 (Mus musculus) (M.musculus) AI228030 Sin3-associated polypeptide 18 Sap18 290284 NM_001033685 0005515 // protein binding // not recorded 1392466_at BF416266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416266 /DB_XREF=gi:11404255 /DB_XREF=UI-R-CA0-bkr-d-10-0-UI.s1 /CLONE=UI-R-CA0-bkr-d-10-0-UI /FEA=EST /CNT=12 /TID=Rn.19940.1 /TIER=ConsEnd /STK=1 /UG=Rn.19940 /UG_TITLE=ESTs BF416266 transmembrane protein 135 Tmem135 293098 NM_001013896 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1392467_at AW525609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525609 /DB_XREF=gi:7167994 /DB_XREF=UI-R-BJ0p-ain-f-08-0-UI.s1 /CLONE=UI-R-BJ0p-ain-f-08-0-UI /FEA=EST /CNT=12 /TID=Rn.856.1 /TIER=ConsEnd /STK=1 /UG=Rn.856 /UG_TITLE=ESTs, Weakly similar to MYOP RAT MYO-INOSITOL-1(OR 4)-MONOPHOSPHATASE (R.norvegicus) AW525609 inositol (myo)-1(or 4)-monophosphatase 2 Impa2 282636 NM_172224 0046855 // inositol phosphate dephosphorylation // inferred from electronic annotation /// 0046855 // inositol phosphate dephosphorylation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0008934 // inositol-1(or 4)-monophosphatase activity // inferred from electronic annotation /// 0008934 // inositol-1(or 4)-monophosphatase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1392468_at AW526683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526683 /DB_XREF=gi:7169097 /DB_XREF=UI-R-BO1-ajd-g-11-0-UI.s1 /CLONE=UI-R-BO1-ajd-g-11-0-UI /FEA=EST /CNT=11 /TID=Rn.15666.1 /TIER=ConsEnd /STK=1 /UG=Rn.15666 /UG_TITLE=ESTs AW526683 calmodulin regulated spectrin-associated protein 1-like 1 Camsap1l1 289400 NM_001134503 0005515 // protein binding // not recorded 1392469_at AI102773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102773 /DB_XREF=gi:3707458 /DB_XREF=EST212062 /CLONE=REMBS31 /FEA=EST /CNT=11 /TID=Rn.17910.1 /TIER=ConsEnd /STK=1 /UG=Rn.17910 /UG_TITLE=ESTs, Highly similar to A56640 CDC4 repeat unit-containing protein - mouse (M.musculus) AI102773 F-box and WD repeat domain containing 2 Fbxw2 311881 NM_001107835 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392470_at AI180223 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180223 /DB_XREF=gi:3730861 /DB_XREF=EST223966 /CLONE=RSPCS14 /FEA=EST /CNT=15 /TID=Rn.11589.1 /TIER=ConsEnd /STK=1 /UG=Rn.11589 /UG_TITLE=ESTs AI180223 0005488 // binding // inferred from electronic annotation 1392471_at BI302750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302750 /DB_XREF=gi:14979030 /DB_XREF=UI-R-DO0-ciy-g-03-0-UI.s1 /CLONE=UI-R-DO0-ciy-g-03-0-UI /FEA=EST /CNT=10 /TID=Rn.17099.1 /TIER=ConsEnd /STK=1 /UG=Rn.17099 /UG_TITLE=ESTs BI302750 1392472_at BI281877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281877 /DB_XREF=gi:14932066 /DB_XREF=UI-R-CU0s-cbt-f-05-0-UI.s1 /CLONE=UI-R-CU0s-cbt-f-05-0-UI /FEA=EST /CNT=10 /TID=Rn.24855.1 /TIER=ConsEnd /STK=1 /UG=Rn.24855 /UG_TITLE=ESTs, Highly similar to MEFA MOUSE MYOCYTE-SPECIFIC ENHANCER FACTOR 2A (M.musculus) BI281877 myocyte enhancer factor 2a Mef2a 309957 NM_001014035 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1392473_at AW525353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525353 /DB_XREF=gi:7167738 /DB_XREF=UI-R-BJ0p-aiq-f-12-0-UI.s1 /CLONE=UI-R-BJ0p-aiq-f-12-0-UI /FEA=EST /CNT=10 /TID=Rn.26131.1 /TIER=ConsEnd /STK=1 /UG=Rn.26131 /UG_TITLE=ESTs AW525353 1392474_at AA875021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875021 /DB_XREF=gi:4230903 /DB_XREF=UI-R-E0-cb-f-10-0-UI.s1 /CLONE=UI-R-E0-cb-f-10-0-UI /FEA=EST /CNT=13 /TID=Rn.17602.1 /TIER=ConsEnd /STK=1 /UG=Rn.17602 /UG_TITLE=ESTs AA875021 Unc-51 like kinase 2 (C. elegans) Ulk2 303206 NM_001191645 /// XM_001077885 /// XM_220541 0006468 // protein phosphorylation // inferred from electronic annotation /// 0048671 // negative regulation of collateral sprouting // not recorded /// 0048675 // axon extension // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1392475_at BE104169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104169 /DB_XREF=gi:8496269 /DB_XREF=UI-R-BX0-arl-e-11-0-UI.s1 /CLONE=UI-R-BX0-arl-e-11-0-UI /FEA=EST /CNT=12 /TID=Rn.15235.1 /TIER=ConsEnd /STK=1 /UG=Rn.15235 /UG_TITLE=ESTs BE104169 activating transcription factor 6 Atf6 304962 NM_001107196 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1392476_at BE105480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105480 /DB_XREF=gi:8497582 /DB_XREF=UI-R-BX0-arv-c-05-0-UI.s1 /CLONE=UI-R-BX0-arv-c-05-0-UI /FEA=EST /CNT=11 /TID=Rn.10465.1 /TIER=ConsEnd /STK=1 /UG=Rn.10465 /UG_TITLE=ESTs, Highly similar to HISTONE H4 (R.norvegicus) BE105480 histone H4 variant H4-v.1 RGD1562378 500351 XM_001072344 /// XM_575704 0001503 // ossification // inferred from electronic annotation /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045653 // negative regulation of megakaryocyte differentiation // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation 1392477_at AI059914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059914 /DB_XREF=gi:3333691 /DB_XREF=UI-R-C1-kr-b-06-0-UI.s1 /CLONE=UI-R-C1-kr-b-06-0-UI /FEA=EST /CNT=10 /TID=Rn.21155.1 /TIER=ConsEnd /STK=1 /UG=Rn.21155 /UG_TITLE=ESTs, Highly similar to ETV1 MOUSE ER81 PROTEIN (M.musculus) AI059914 ets variant 1 Etv1 362733 NM_001108709 /// NM_001163156 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007517 // muscle organ development // not recorded /// 0007638 // mechanosensory behavior // not recorded /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1392478_at BG381176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381176 /DB_XREF=gi:13305648 /DB_XREF=UI-R-CT0-buh-b-03-0-UI.s1 /CLONE=UI-R-CT0-buh-b-03-0-UI /FEA=EST /CNT=10 /TID=Rn.19403.1 /TIER=ConsEnd /STK=1 /UG=Rn.19403 /UG_TITLE=ESTs BG381176 RAB6B, member RAS oncogene family Rab6b 363123 NM_001108775 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1392479_at AA925694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925694 /DB_XREF=gi:4236885 /DB_XREF=UI-R-A1-ec-a-05-0-UI.s1 /CLONE=UI-R-A1-ec-a-05-0-UI /FEA=EST /CNT=9 /TID=Rn.15580.1 /TIER=ConsEnd /STK=1 /UG=Rn.15580 /UG_TITLE=ESTs AA925694 1392480_at BE100901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100901 /DB_XREF=gi:8492802 /DB_XREF=UI-R-BJ1-atx-g-08-0-UI.s1 /CLONE=UI-R-BJ1-atx-g-08-0-UI /FEA=EST /CNT=9 /TID=Rn.7472.1 /TIER=ConsEnd /STK=1 /UG=Rn.7472 /UG_TITLE=ESTs BE100901 1392481_at BG057566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG057566 /DB_XREF=gi:12523184 /DB_XREF=nag14g09.x1 /CLONE=IMAGE:4176209 /FEA=EST /CNT=9 /TID=Rn.22860.1 /TIER=ConsEnd /STK=1 /UG=Rn.22860 /UG_TITLE=ESTs, Highly similar to AF103798 1 unknown (H.sapiens) BG057566 similar to DNA segment, Chr 1, Brigham & Womens Genetics 0212 expressed RGD1560909 363221 NM_001108794 1392482_at BF409567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409567 /DB_XREF=gi:11397542 /DB_XREF=UI-R-CA1-bll-h-02-0-UI.s1 /CLONE=UI-R-CA1-bll-h-02-0-UI /FEA=EST /CNT=14 /TID=Rn.22705.1 /TIER=ConsEnd /STK=1 /UG=Rn.22705 /UG_TITLE=ESTs, Weakly similar to stress-inducible chaperone mt-GrpEno. 1 (Rattus norvegicus) (R.norvegicus) BF409567 GrpE-like 2, mitochondrial Grpel2 688777 NM_001109513 0006457 // protein folding // inferred from electronic annotation /// 0030150 // protein import into mitochondrial matrix // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0000774 // adenyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0051082 // unfolded protein binding // not recorded /// 0051087 // chaperone binding // inferred from electronic annotation 1392483_at AA892677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892677 /DB_XREF=gi:3019556 /DB_XREF=EST196480 /CLONE=RKIAV66 /FEA=EST /CNT=13 /TID=Rn.16261.1 /TIER=ConsEnd /STK=1 /UG=Rn.16261 /UG_TITLE=ESTs AA892677 1392484_at AA892339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892339 /DB_XREF=gi:3019218 /DB_XREF=EST196142 /CLONE=RKIAP26 /FEA=EST /CNT=12 /TID=Rn.23275.1 /TIER=ConsEnd /STK=1 /UG=Rn.23275 /UG_TITLE=ESTs AA892339 hypothetical protein LOC100233176 LOC100233176 100233176 NM_001142941 /// NM_001142942 1392485_at BI290555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290555 /DB_XREF=gi:14949234 /DB_XREF=UI-R-DK0-cgd-f-03-0-UI.s1 /CLONE=UI-R-DK0-cgd-f-03-0-UI /FEA=EST /CNT=11 /TID=Rn.7322.1 /TIER=ConsEnd /STK=1 /UG=Rn.7322 /UG_TITLE=ESTs, Weakly similar to T19073 hypothetical protein C08B11.9 - Caenorhabditis elegans (C.elegans) BI290555 similar to chromosome 1 open reading frame 50 RGD1564804 313551 NM_001107969 1392486_at AW433977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433977 /DB_XREF=gi:6965284 /DB_XREF=UI-R-BJ0p-afn-g-10-0-UI.s1 /CLONE=UI-R-BJ0p-afn-g-10-0-UI /FEA=EST /CNT=10 /TID=Rn.8020.1 /TIER=ConsEnd /STK=1 /UG=Rn.8020 /UG_TITLE=ESTs AW433977 transmembrane protein 106B Tmem106b 312132 NM_001004267 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1392487_at BI303896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303896 /DB_XREF=gi:14980176 /DB_XREF=UI-R-DR0-cjb-f-24-0-UI.s1 /CLONE=UI-R-DR0-cjb-f-24-0-UI /FEA=EST /CNT=10 /TID=Rn.25888.1 /TIER=ConsEnd /STK=1 /UG=Rn.25888 /UG_TITLE=ESTs BI303896 1392488_at AI168950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI168950 /DB_XREF=gi:3705258 /DB_XREF=EST214778 /CLONE=RKIBL09 /FEA=EST /CNT=9 /TID=Rn.22390.1 /TIER=ConsEnd /STK=1 /UG=Rn.22390 /UG_TITLE=ESTs AI168950 AMME chromosomal region gene 1-like Ammecr1l 307526 NM_001107399 1392489_at BE108956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108956 /DB_XREF=gi:8501061 /DB_XREF=UI-R-BS1-aza-d-01-0-UI.s1 /CLONE=UI-R-BS1-aza-d-01-0-UI /FEA=EST /CNT=9 /TID=Rn.8458.1 /TIER=ConsEnd /STK=1 /UG=Rn.8458 /UG_TITLE=ESTs BE108956 1392490_at BM390676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390676 /DB_XREF=gi:18190729 /DB_XREF=UI-R-CN1-cjr-k-24-0-UI.s1 /CLONE=UI-R-CN1-cjr-k-24-0-UI /FEA=EST /CNT=9 /TID=Rn.14832.1 /TIER=ConsEnd /STK=1 /UG=Rn.14832 /UG_TITLE=ESTs BM390676 1392491_at AI072533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072533 /DB_XREF=gi:3398727 /DB_XREF=UI-R-C2-ni-d-06-0-UI.s1 /CLONE=UI-R-C2-ni-d-06-0-UI /FEA=EST /CNT=8 /TID=Rn.16560.1 /TIER=ConsEnd /STK=1 /UG=Rn.16560 /UG_TITLE=ESTs AI072533 1392492_at AA956982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956982 /DB_XREF=gi:4239455 /DB_XREF=UI-R-E1-fq-b-05-0-UI.s1 /CLONE=UI-R-E1-fq-b-05-0-UI /FEA=EST /CNT=8 /TID=Rn.19490.1 /TIER=ConsEnd /STK=1 /UG=Rn.19490 /UG_TITLE=ESTs AA956982 1392493_at AI501338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501338 /DB_XREF=gi:4399189 /DB_XREF=UI-R-C2p-ru-d-12-0-UI.s1 /CLONE=UI-R-C2p-ru-d-12-0-UI /FEA=EST /CNT=8 /TID=Rn.8058.1 /TIER=ConsEnd /STK=1 /UG=Rn.8058 /UG_TITLE=ESTs AI501338 1392494_at AI180300 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180300 /DB_XREF=gi:3730938 /DB_XREF=EST224043 /CLONE=RSPCT04 /FEA=EST /CNT=8 /TID=Rn.37073.1 /TIER=ConsEnd /STK=1 /UG=Rn.37073 /UG_TITLE=ESTs AI180300 similar to hypothetical protein D030056L22 LOC499331 499331 NM_001024293 1392495_at BF408346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408346 /DB_XREF=gi:11396321 /DB_XREF=UI-R-BJ2-brb-g-04-0-UI.s1 /CLONE=UI-R-BJ2-brb-g-04-0-UI /FEA=EST /CNT=8 /TID=Rn.16275.1 /TIER=ConsEnd /STK=1 /UG=Rn.16275 /UG_TITLE=ESTs, Highly similar to AGM1_HUMAN PHOSPHOACETYLGLUCOSAMINE MUTASE (PAGM) (ACETYLGLUCOSAMINE PHOSPHOMUTASE) (N-ACETYLGLUCOSAMINE-PHOSPHATE MUTASE) (H.sapiens) BF408346 similar to dJ202D23.2 (novel protein similar to C21ORF5 (KIAA0933)) RGD1305534 315864 XM_001062758 /// XM_236449 1392496_at AI178581 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178581 /DB_XREF=gi:3729219 /DB_XREF=EST222260 /CLONE=RPLCT05 /FEA=EST /CNT=8 /TID=Rn.13006.1 /TIER=ConsEnd /STK=1 /UG=Rn.13006 /UG_TITLE=ESTs, Highly similar to TRYPSINOGEN V-A PRECURSOR (R.norvegicus) AI178581 Trypsin V-A LOC312273 312273 NM_001107856 0006508 // proteolysis // inferred from electronic annotation /// 0007586 // digestion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392497_at BE104938 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104938 /DB_XREF=gi:8497039 /DB_XREF=UI-R-BX0-arw-d-10-0-UI.s1 /CLONE=UI-R-BX0-arw-d-10-0-UI /FEA=EST /CNT=8 /TID=Rn.49273.1 /TIER=ConsEnd /STK=1 /UG=Rn.49273 /UG_TITLE=ESTs BE104938 1392498_at BG670494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670494 /DB_XREF=gi:13892593 /DB_XREF=DRNBBH04 /CLONE=DRNBBH04 /FEA=EST /CNT=8 /TID=Rn.18292.1 /TIER=ConsEnd /STK=1 /UG=Rn.18292 /UG_TITLE=ESTs, Highly similar to 2A5G MOUSE SERINETHREONINE PROTEIN PHOSPHATASE 2A, 56 KDA REGULATORY SUBUNIT, GAMMA ISOFORM (M.musculus) BG670494 similar to Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform (PP2A, B subunit, B gamma isoform) (PP2A, B subunit, B56 gamma isoform) (PP2A, B subunit, PR61 gamma isoform) (PP2A, B subunit, R5 gamma isoform) (PP2A, B su... /// protein phosphatase 2, regulatory subunit B', gamma isoform LOC684586 /// Ppp2r5c 684586 /// 691318 NM_001191112 /// XM_001077680 /// XM_002726788 /// XM_002729725 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation /// 0000159 // protein phosphatase type 2A complex // not recorded /// 0000775 // chromosome, centromeric region // not recorded /// 0005634 // nucleus // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008601 // protein phosphatase type 2A regulator activity // inferred from electronic annotation /// 0008601 // protein phosphatase type 2A regulator activity // not recorded 1392499_at H32997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H32997 /DB_XREF=gi:978414 /DB_XREF=EST108592 /CLONE=RPNAD08 /FEA=EST /CNT=10 /TID=Rn.5855.1 /TIER=ConsEnd /STK=1 /UG=Rn.5855 /UG_TITLE=ESTs H32997 phosphoribosylformylglycinamidine synthase Pfas 287420 NM_001105791 0006189 // 'de novo' IMP biosynthetic process // inferred from electronic annotation /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004642 // phosphoribosylformylglycinamidine synthase activity // inferred from electronic annotation /// 0004642 // phosphoribosylformylglycinamidine synthase activity // not recorded /// 0005515 // protein binding // not recorded 1392500_at AA957990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957990 /DB_XREF=gi:4277880 /DB_XREF=UI-R-E1-gc-f-02-0-UI.s1 /CLONE=UI-R-E1-gc-f-02-0-UI /FEA=EST /CNT=10 /TID=Rn.13058.3 /TIER=ConsEnd /STK=1 /UG=Rn.13058 /UG_TITLE=ESTs AA957990 1392501_at BE120710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120710 /DB_XREF=gi:8512815 /DB_XREF=UI-R-CA0-bay-f-07-0-UI.s1 /CLONE=UI-R-CA0-bay-f-07-0-UI /FEA=EST /CNT=9 /TID=Rn.29046.1 /TIER=ConsEnd /STK=1 /UG=Rn.29046 /UG_TITLE=ESTs BE120710 1392502_at BI275796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275796 /DB_XREF=gi:14920064 /DB_XREF=UI-R-CX0-bxg-g-01-0-UI.s1 /CLONE=UI-R-CX0-bxg-g-01-0-UI /FEA=EST /CNT=9 /TID=Rn.17859.2 /TIER=ConsEnd /STK=1 /UG=Rn.17859 /UG_TITLE=ESTs, Weakly similar to T12528 hypothetical protein DKFZp434N093.1 (H.sapiens) BI275796 AT hook containing transcription factor 1 /// transcription factor ELYS-like Ahctf1 /// LOC100365024 100365024 /// 360886 XM_341161 /// XR_085605 0000910 // cytokinesis // not recorded /// 0045449 // regulation of transcription // not recorded /// 0051292 // nuclear pore complex assembly // not recorded 0000777 // condensed chromosome kinetochore // not recorded /// 0000785 // chromatin // not recorded /// 0005634 // nucleus // not recorded /// 0005643 // nuclear pore // not recorded /// 0005737 // cytoplasm // not recorded /// 0016363 // nuclear matrix // not recorded /// 0031080 // Nup107-160 complex // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // not recorded 1392503_at BE100371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100371 /DB_XREF=gi:8492262 /DB_XREF=UI-R-BJ1-att-g-01-0-UI.s1 /CLONE=UI-R-BJ1-att-g-01-0-UI /FEA=EST /CNT=8 /TID=Rn.35532.2 /TIER=ConsEnd /STK=1 /UG=Rn.35532 /UG_TITLE=ESTs, Weakly similar to T24851 hypothetical protein T11G6.8 - Caenorhabditis elegans (C.elegans) BE100371 RNA binding motif protein 22 Rbm22 307410 NM_001025676 0000060 // protein import into nucleus, translocation // inferred from electronic annotation /// 0000060 // protein import into nucleus, translocation // not recorded /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded 1392504_at BI297184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297184 /DB_XREF=gi:14962331 /DB_XREF=UI-R-DK0-cgc-d-09-0-UI.s1 /CLONE=UI-R-DK0-cgc-d-09-0-UI /FEA=EST /CNT=8 /TID=Rn.45009.1 /TIER=ConsEnd /STK=1 /UG=Rn.45009 /UG_TITLE=ESTs BI297184 similar to RIKEN cDNA 1600012F09 RGD1306613 306994 NM_001107356 1392505_at AI232232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232232 /DB_XREF=gi:3816112 /DB_XREF=EST228920 /CLONE=RKIBY70 /FEA=EST /CNT=8 /TID=Rn.24482.1 /TIER=ConsEnd /STK=1 /UG=Rn.24482 /UG_TITLE=ESTs, Moderately similar to T00374 hypothetical protein KIAA0648 (H.sapiens) AI232232 PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) Pds5a 305343 NM_001083624 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0008156 // negative regulation of DNA replication // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0000785 // chromatin // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1392506_at AI575645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575645 /DB_XREF=gi:4560021 /DB_XREF=UI-R-Y0-vi-e-07-0-UI.s1 /CLONE=UI-R-Y0-vi-e-07-0-UI /FEA=EST /CNT=8 /TID=Rn.44173.1 /TIER=ConsEnd /STK=1 /UG=Rn.44173 /UG_TITLE=ESTs, Moderately similar to QORL_HUMAN QUINONE OXIDOREDUCTASE-LIKE 1 (H.sapiens) AI575645 crystallin, zeta (quinone reductase)-like 1 Cryzl1 288256 NM_001013044 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1392507_at AI385280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385280 /DB_XREF=gi:4198062 /DB_XREF=UI-R-C2-mw-c-01-0-UI.s2 /CLONE=UI-R-C2-mw-c-01-0-UI /FEA=EST /CNT=8 /TID=Rn.17797.1 /TIER=ConsEnd /STK=1 /UG=Rn.17797 /UG_TITLE=ESTs AI385280 1392508_at BE119831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119831 /DB_XREF=gi:8511936 /DB_XREF=UI-R-CA0-ban-e-07-0-UI.s1 /CLONE=UI-R-CA0-ban-e-07-0-UI /FEA=EST /CNT=7 /TID=Rn.17469.1 /TIER=ConsEnd /STK=1 /UG=Rn.17469 /UG_TITLE=ESTs BE119831 exoribonuclease 1 Eri1 361159 NM_001014143 0006364 // rRNA processing // inferred from electronic annotation /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0031125 // rRNA 3'-end processing // not recorded /// 0031125 // rRNA 3'-end processing // inferred from sequence or structural similarity /// 0031125 // rRNA 3'-end processing // inferred from electronic annotation /// 0071044 // histone mRNA catabolic process // not recorded /// 0071044 // histone mRNA catabolic process // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0071204 // histone pre-mRNA 3'end processing complex // not recorded /// 0071204 // histone pre-mRNA 3'end processing complex // inferred from sequence or structural similarity /// 0071204 // histone pre-mRNA 3'end processing complex // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0008408 // 3'-5' exonuclease activity // not recorded /// 0008408 // 3'-5' exonuclease activity // inferred from sequence or structural similarity /// 0008408 // 3'-5' exonuclease activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019843 // rRNA binding // not recorded /// 0019843 // rRNA binding // inferred from sequence or structural similarity /// 0019843 // rRNA binding // inferred from electronic annotation /// 0043022 // ribosome binding // not recorded /// 0043022 // ribosome binding // inferred from sequence or structural similarity /// 0043022 // ribosome binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0071207 // histone pre-mRNA stem-loop binding // not recorded /// 0071207 // histone pre-mRNA stem-loop binding // inferred from sequence or structural similarity /// 0071207 // histone pre-mRNA stem-loop binding // inferred from electronic annotation 1392509_at AA925469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925469 /DB_XREF=gi:4236660 /DB_XREF=UI-R-A1-ec-h-10-0-UI.s1 /CLONE=UI-R-A1-ec-h-10-0-UI /FEA=EST /CNT=7 /TID=Rn.15533.1 /TIER=ConsEnd /STK=1 /UG=Rn.15533 /UG_TITLE=ESTs AA925469 Cas-Br-M (murine) ecotropic retroviral transforming sequence-like 1 Cbll1 314028 NM_001108018 0007162 // negative regulation of cell adhesion // not recorded /// 0016337 // cell-cell adhesion // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0030335 // positive regulation of cell migration // not recorded /// 0045807 // positive regulation of endocytosis // not recorded 0005622 // intracellular // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392510_at BF283618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283618 /DB_XREF=gi:11214688 /DB_XREF=EST448209 /CLONE=RGIEE64 /FEA=EST /CNT=7 /TID=Rn.23539.1 /TIER=ConsEnd /STK=1 /UG=Rn.23539 /UG_TITLE=ESTs BF283618 family with sequence similarity 180, member A Fam180a 362336 NM_001108621 1392511_at AA998513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998513 /DB_XREF=gi:4290378 /DB_XREF=UI-R-C0-ic-a-07-0-UI.s1 /CLONE=UI-R-C0-ic-a-07-0-UI /FEA=EST /CNT=7 /TID=Rn.33143.1 /TIER=ConsEnd /STK=1 /UG=Rn.33143 /UG_TITLE=ESTs AA998513 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor Taf2 170844 NM_133319 0000086 // G2/M transition of mitotic cell cycle // not recorded /// 0000086 // G2/M transition of mitotic cell cycle // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern 0005669 // transcription factor TFIID complex // not recorded /// 0005669 // transcription factor TFIID complex // inferred from electronic annotation /// 0033276 // transcription factor TFTC complex // not recorded /// 0033276 // transcription factor TFTC complex // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation 1392512_at AW533007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533007 /DB_XREF=gi:7175421 /DB_XREF=UI-R-BU0-amy-f-12-0-UI.s1 /CLONE=UI-R-BU0-amy-f-12-0-UI /FEA=EST /CNT=7 /TID=Rn.39174.1 /TIER=ConsEnd /STK=1 /UG=Rn.39174 /UG_TITLE=ESTs, Highly similar to 0506206A histone H2B (R.norvegicus) AW533007 histone cluster 3, H2ba Hist3h2ba 303175 NM_001111127 0006334 // nucleosome assembly // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1392513_at AI171879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171879 /DB_XREF=gi:4134676 /DB_XREF=EST217868 /CLONE=RMUBR88 /FEA=EST /CNT=7 /TID=Rn.43960.1 /TIER=ConsEnd /STK=1 /UG=Rn.43960 /UG_TITLE=ESTs, Weakly similar to YPI7_CAEEL HYPOTHETICAL 83.8 KD PROTEIN C27F2.7 IN CHROMOSOME III (C.elegans) AI171879 similar to hypothetical protein FLJ11305 RGD1307041 361182 NM_001169144 1392514_at BE095565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095565 /DB_XREF=gi:8486496 /DB_XREF=UI-R-BT1-amg-b-01-0-UI.s1 /CLONE=UI-R-BT1-amg-b-01-0-UI /FEA=EST /CNT=7 /TID=Rn.25279.1 /TIER=ConsEnd /STK=1 /UG=Rn.25279 /UG_TITLE=ESTs, Weakly similar to S38159 hypothetical protein YKR081c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BE095565 brix domain containing 1 Bxdc1 294436 NM_001106391 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392515_at AI177403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177403 /DB_XREF=gi:3728041 /DB_XREF=EST221023 /CLONE=RPLBY69 /FEA=EST /CNT=7 /TID=Rn.36964.1 /TIER=ConsEnd /STK=1 /UG=Rn.36964 /UG_TITLE=ESTs, Weakly similar to KLR6 MOUSE KILLER CELL LECTIN-LIKE RECEPTOR 6 (M.musculus) AI177403 killer cell lectin-like receptor, subfamily A, member 17 /// immunoreceptor Ly49si3-like /// hypothetical protein LOC497796 /// similar to immunoreceptor Ly49si1 /// Ly49 inhibitory receptor 5 /// immunoreceptor Ly49si1 /// immunoreceptor Ly49si2 /// immunoreceptor Ly49si3 /// similar to immunoreceptor Ly49si3 Klra17 /// LOC100364751 /// LOC497796 /// LOC502907 /// Ly49i5 /// Ly49si1 /// Ly49si2 /// Ly49si3 /// RGD1561306 100364751 /// 494206 /// 494207 /// 494209 /// 494211 /// 497796 /// 502904 /// 502907 /// 690045 NM_001009497 /// NM_001009498 /// NM_001009501 /// NM_001009919 /// NM_001111310 /// NM_001172088 /// XM_001068618 /// XM_001073024 /// XM_002726461 /// XM_002726462 /// XM_002726465 /// XM_578406 /// XM_578409 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1392516_a_at AI236580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236580 /DB_XREF=gi:4136215 /DB_XREF=EST233142 /CLONE=ROVDH93 /FEA=EST /CNT=7 /TID=Rn.31698.1 /TIER=ConsEnd /STK=1 /UG=Rn.31698 /UG_TITLE=ESTs AI236580 StAR-related lipid transfer (START) domain containing 4 Stard4 291699 NM_001106159 1392517_at AI102175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102175 /DB_XREF=gi:3706984 /DB_XREF=EST211464 /CLONE=RBRCA18 /FEA=EST /CNT=7 /TID=Rn.11987.1 /TIER=ConsEnd /STK=1 /UG=Rn.11987 /UG_TITLE=ESTs AI102175 basic leucine zipper nuclear factor 1 Blzf1 498266 NM_001017494 0007030 // Golgi organization // not recorded /// 0043001 // Golgi to plasma membrane protein transport // not recorded 0000139 // Golgi membrane // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005794 // Golgi apparatus // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1392518_at AI577870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577870 /DB_XREF=gi:4562246 /DB_XREF=UI-R-AB0-vw-f-05-0-UI.s1 /CLONE=UI-R-AB0-vw-f-05-0-UI /FEA=EST /CNT=7 /TID=Rn.23598.1 /TIER=ConsEnd /STK=1 /UG=Rn.23598 /UG_TITLE=ESTs, Weakly similar to T21697 hypothetical protein F40E10.6 - Caenorhabditis elegans (C.elegans) AI577870 transmembrane protein 184B Tmem184b 362959 NM_001173370 /// XM_001076493 /// XM_343289 1392519_at AA998248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998248 /DB_XREF=gi:4288544 /DB_XREF=UI-R-C0-ie-e-03-0-UI.s1 /CLONE=UI-R-C0-ie-e-03-0-UI /FEA=EST /CNT=7 /TID=Rn.23303.1 /TIER=ConsEnd /STK=1 /UG=Rn.23303 /UG_TITLE=ESTs, Moderately similar to B47328 natural killer cell tumor-recognition protein - mouse (M.musculus) AA998248 1392520_at AI136944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136944 /DB_XREF=gi:3637721 /DB_XREF=UI-R-C2p-nu-h-08-0-UI.s1 /CLONE=UI-R-C2p-nu-h-08-0-UI /FEA=EST /CNT=7 /TID=Rn.22166.1 /TIER=ConsEnd /STK=1 /UG=Rn.22166 /UG_TITLE=ESTs, Highly similar to S54293 regulator protein p122-RhoGAP - rat (R.norvegicus) AI136944 deleted in liver cancer 1 Dlc1 58834 NM_001127446 0001843 // neural tube closure // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0007010 // cytoskeleton organization // inferred from direct assay /// 0007010 // cytoskeleton organization // non-traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0007202 // activation of phospholipase C activity // inferred from direct assay /// 0007266 // Rho protein signal transduction // non-traceable author statement /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0021575 // hindbrain morphogenesis // inferred from electronic annotation /// 0021575 // hindbrain morphogenesis // not recorded /// 0030036 // actin cytoskeleton organization // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0032956 // regulation of actin cytoskeleton organization // inferred from electronic annotation /// 0032956 // regulation of actin cytoskeleton organization // not recorded /// 0035024 // negative regulation of Rho protein signal transduction // inferred from electronic annotation /// 0035024 // negative regulation of Rho protein signal transduction // not recorded /// 0035307 // positive regulation of protein dephosphorylation // inferred from electronic annotation /// 0035307 // positive regulation of protein dephosphorylation // not recorded /// 0048041 // focal adhesion assembly // inferred from electronic annotation /// 0048041 // focal adhesion assembly // not recorded /// 0051497 // negative regulation of stress fiber assembly // inferred from electronic annotation /// 0051497 // negative regulation of stress fiber assembly // not recorded 0001725 // stress fiber // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from mutant phenotype /// 0005884 // actin filament // inferred from direct assay /// 0005901 // caveola // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0005925 // focal adhesion // inferred from direct assay /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005100 // Rho GTPase activator activity // inferred from direct assay /// 0005100 // Rho GTPase activator activity // not recorded /// 0005100 // Rho GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017166 // vinculin binding // inferred from physical interaction /// 0030675 // Rac GTPase activator activity // not recorded /// 0042169 // SH2 domain binding // inferred from electronic annotation /// 0042169 // SH2 domain binding // not recorded /// 0043274 // phospholipase binding // inferred from physical interaction 1392521_at AI030119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030119 /DB_XREF=gi:3247945 /DB_XREF=UI-R-C0-iz-g-12-0-UI.s1 /CLONE=UI-R-C0-iz-g-12-0-UI /FEA=EST /CNT=7 /TID=Rn.18407.1 /TIER=ConsEnd /STK=1 /UG=Rn.18407 /UG_TITLE=ESTs AI030119 1392522_at AA925790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925790 /DB_XREF=gi:4236981 /DB_XREF=UI-R-A1-et-f-04-0-UI.s1 /CLONE=UI-R-A1-et-f-04-0-UI /FEA=EST /CNT=7 /TID=Rn.23082.1 /TIER=ConsEnd /STK=1 /UG=Rn.23082 /UG_TITLE=ESTs, Weakly similar to S58784 probable membrane protein YDL193w - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AA925790 nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) Nus1 294400 NM_001164157 0016765 // transferase activity, transferring alkyl or aryl (other than methyl) groups // inferred from electronic annotation 1392523_at AW144637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144637 /DB_XREF=gi:6164536 /DB_XREF=EST295015 /CLONE=RGIBW17 /FEA=EST /CNT=7 /TID=Rn.23086.1 /TIER=ConsEnd /STK=1 /UG=Rn.23086 /UG_TITLE=ESTs AW144637 Son DNA binding protein Son 304092 NM_001170327 /// NM_001170328 0006916 // anti-apoptosis // not recorded 0005622 // intracellular // inferred from electronic annotation 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0050733 // RS domain binding // not recorded 1392524_at AI234031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234031 /DB_XREF=gi:3817911 /DB_XREF=EST230719 /CLONE=RLUCU31 /FEA=EST /CNT=11 /TID=Rn.6763.1 /TIER=ConsEnd /STK=1 /UG=Rn.6763 /UG_TITLE=ESTs AI234031 tripartite motif-containing 23 Trim23 81002 NM_001100637 /// XM_001064069 /// XM_342183 0006471 // protein ADP-ribosylation // inferred from direct assay /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from sequence or structural similarity /// 0016567 // protein ubiquitination // inferred from electronic annotation 0000139 // Golgi membrane // not recorded /// 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // not recorded /// 0005765 // lysosomal membrane // inferred from sequence or structural similarity /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0003924 // GTPase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019003 // GDP binding // not recorded /// 0019003 // GDP binding // inferred from sequence or structural similarity /// 0019003 // GDP binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392525_at AA859437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859437 /DB_XREF=gi:4228811 /DB_XREF=UI-R-A0-bf-a-01-0-UI.s1 /CLONE=UI-R-A0-bf-a-01-0-UI /FEA=EST /CNT=11 /TID=Rn.13544.1 /TIER=ConsEnd /STK=1 /UG=Rn.13544 /UG_TITLE=ESTs AA859437 1392526_at AA901274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901274 /DB_XREF=gi:4233775 /DB_XREF=UI-R-A1-dw-h-08-0-UI.s1 /CLONE=UI-R-A1-dw-h-08-0-UI /FEA=EST /CNT=9 /TID=Rn.6411.1 /TIER=ConsEnd /STK=1 /UG=Rn.6411 /UG_TITLE=ESTs AA901274 1392527_at AI137840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137840 /DB_XREF=gi:3638617 /DB_XREF=UI-R-C0-ih-d-06-0-UI.s1 /CLONE=UI-R-C0-ih-d-06-0-UI /FEA=EST /CNT=9 /TID=Rn.6532.1 /TIER=ConsEnd /STK=1 /UG=Rn.6532 /UG_TITLE=ESTs, Weakly similar to T25890 hypothetical protein T19B4.4 - Caenorhabditis elegans (C.elegans) AI137840 similar to homolog of yeast TIM14 isoform c RGD1560220 502525 NM_001134640 1392528_at AI555854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555854 /DB_XREF=gi:4488217 /DB_XREF=UI-R-C2p-re-g-05-0-UI.s1 /CLONE=UI-R-C2p-re-g-05-0-UI /FEA=EST /CNT=8 /TID=Rn.21487.1 /TIER=ConsEnd /STK=1 /UG=Rn.21487 /UG_TITLE=ESTs, Weakly similar to GMCR_MOUSE Granulocyte-macrophage colony-stimulating factor receptor alpha chain precursor (GM-CSF-R-alpha) (GMR) (M.musculus) AI555854 Granulocyte-macrophage colony stimulating receptor alpha Csf2ra 652957 NM_001037660 0045471 // response to ethanol // inferred from expression pattern 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation 1392529_at BI294478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294478 /DB_XREF=gi:14956967 /DB_XREF=UI-R-DK0-ceo-e-08-0-UI.s1 /CLONE=UI-R-DK0-ceo-e-08-0-UI /FEA=EST /CNT=8 /TID=Rn.24939.1 /TIER=ConsEnd /STK=1 /UG=Rn.24939 /UG_TITLE=ESTs BI294478 sprouty homolog 4 (Drosophila) Spry4 291610 NM_001106150 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009966 // regulation of signal transduction // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // not recorded 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1392530_at AI409545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409545 /DB_XREF=gi:4253049 /DB_XREF=EST237837 /CLONE=RKIDW38 /FEA=EST /CNT=8 /TID=Rn.8096.1 /TIER=ConsEnd /STK=1 /UG=Rn.8096 /UG_TITLE=ESTs, Moderately similar to NADH-ubiquinone oxidoreductase subunit CI-KFYI (H.sapiens) AI409545 NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1 Ndufc1 689938 XM_001072602 0005739 // mitochondrion // not recorded 1392531_at AI178693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178693 /DB_XREF=gi:3729331 /DB_XREF=EST222374 /CLONE=RPLCU40 /FEA=EST /CNT=7 /TID=Rn.37014.1 /TIER=ConsEnd /STK=1 /UG=Rn.37014 /UG_TITLE=ESTs AI178693 tocopherol (alpha) transfer protein-like Ttpal 296349 NM_001106537 0006810 // transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1392532_at AI145043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145043 /DB_XREF=gi:3666842 /DB_XREF=UI-R-BT0-pt-a-02-0-UI.s1 /CLONE=UI-R-BT0-pt-a-02-0-UI /FEA=EST /CNT=7 /TID=Rn.31087.1 /TIER=ConsEnd /STK=1 /UG=Rn.31087 /UG_TITLE=ESTs AI145043 Kinesin family member 2A Kif2a 84391 XM_001065116 /// XM_001065173 /// XM_002729004 /// XM_345150 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007052 // mitotic spindle organization // not recorded /// 0007052 // mitotic spindle organization // inferred from sequence or structural similarity /// 0007067 // mitosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000922 // spindle pole // not recorded /// 0000922 // spindle pole // inferred from sequence or structural similarity /// 0000922 // spindle pole // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded /// 0005876 // spindle microtubule // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1392533_at AI716888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716888 /DB_XREF=gi:5034144 /DB_XREF=UI-R-Y0-aci-d-03-0-UI.s1 /CLONE=UI-R-Y0-aci-d-03-0-UI /FEA=EST /CNT=7 /TID=Rn.16411.1 /TIER=ConsEnd /STK=1 /UG=Rn.16411 /UG_TITLE=ESTs AI716888 asparaginyl-tRNA synthetase 2 (mitochondrial)(putative) Nars2 293128 NM_001034921 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006421 // asparaginyl-tRNA aminoacylation // inferred from electronic annotation /// 0006422 // aspartyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004815 // aspartate-tRNA ligase activity // inferred from electronic annotation /// 0004816 // asparagine-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1392534_at BI274101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274101 /DB_XREF=gi:14884704 /DB_XREF=UI-R-CW0-bwc-h-12-0-UI.s1 /CLONE=UI-R-CW0-bwc-h-12-0-UI /FEA=EST /CNT=7 /TID=Rn.20963.1 /TIER=ConsEnd /STK=1 /UG=Rn.20963 /UG_TITLE=ESTs, Moderately similar to C181_HUMAN PROTEIN C18ORF1 (H.sapiens) BI274101 prostate transmembrane protein, androgen induced 1 Pmepa1 311676 NM_001107807 0005515 // protein binding // not recorded /// 0050699 // WW domain binding // not recorded 1392535_at AI169002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169002 /DB_XREF=gi:3705310 /DB_XREF=EST214830 /CLONE=RKIBL72 /FEA=EST /CNT=7 /TID=Rn.40263.1 /TIER=ConsEnd /STK=1 /UG=Rn.40263 /UG_TITLE=ESTs, Weakly similar to A41770 pyrroline-5-carboxylate reductase (H.sapiens) AI169002 pyrroline-5-carboxylate reductase-like Pycrl 300035 NM_001011993 0006561 // proline biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004735 // pyrroline-5-carboxylate reductase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1392536_at AI136839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136839 /DB_XREF=gi:3637616 /DB_XREF=UI-R-C2p-of-a-12-0-UI.s1 /CLONE=UI-R-C2p-of-a-12-0-UI /FEA=EST /CNT=7 /TID=Rn.3287.2 /TIER=ConsEnd /STK=1 /UG=Rn.3287 /UG_TITLE=ESTs AI136839 1392537_at BM389666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389666 /DB_XREF=gi:18189719 /DB_XREF=UI-R-CN1-cjo-o-01-0-UI.s1 /CLONE=UI-R-CN1-cjo-o-01-0-UI /FEA=EST /CNT=7 /TID=Rn.37016.1 /TIER=ConsEnd /STK=1 /UG=Rn.37016 /UG_TITLE=ESTs, Weakly similar to T03307 hypothetical protein AAB71662.1 (H.sapiens) BM389666 similar to Rho guanine nucleotide exchange factor (GEF) 10-like LOC684811 684811 XR_085844 1392538_at BE110656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110656 /DB_XREF=gi:8502761 /DB_XREF=UI-R-BJ1-avu-e-04-0-UI.s1 /CLONE=UI-R-BJ1-avu-e-04-0-UI /FEA=EST /CNT=7 /TID=Rn.25248.1 /TIER=ConsEnd /STK=1 /UG=Rn.25248 /UG_TITLE=ESTs BE110656 signal peptide peptidase 3 Sppl3 360822 XR_085589 /// XR_085997 0016021 // integral to membrane // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation 1392539_at AI009013 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009013 /DB_XREF=gi:3222845 /DB_XREF=EST203464 /CLONE=REMBH22 /FEA=EST /CNT=6 /TID=Rn.43725.1 /TIER=ConsEnd /STK=1 /UG=Rn.43725 /UG_TITLE=ESTs, Highly similar to A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex (H.sapiens) AI009013 biliverdin reductase B (flavin reductase (NADPH)) Blvrb 292737 NM_001106236 0008152 // metabolic process // inferred from electronic annotation /// 0042167 // heme catabolic process // not recorded 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004074 // biliverdin reductase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0042602 // flavin reductase activity // not recorded 1392540_at AI236936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236936 /DB_XREF=gi:3830442 /DB_XREF=EST233498 /CLONE=ROVDM56 /FEA=EST /CNT=6 /TID=Rn.35028.1 /TIER=ConsEnd /STK=1 /UG=Rn.35028 /UG_TITLE=ESTs AI236936 1392541_at AW919608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919608 /DB_XREF=gi:8085406 /DB_XREF=EST350912 /CLONE=RGIFZ79 /FEA=EST /CNT=6 /TID=Rn.56067.1 /TIER=ConsEnd /STK=1 /UG=Rn.56067 /UG_TITLE=ESTs, Weakly similar to C44B7.7.p (Caenorhabditis elegans) (C.elegans) AW919608 gamma-glutamyl cyclotransferase Ggct 362368 NM_001108629 1392542_at AA944330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944330 /DB_XREF=gi:3104246 /DB_XREF=EST199829 /CLONE=REMAF48 /FEA=EST /CNT=6 /TID=Rn.32514.1 /TIER=ConsEnd /STK=1 /UG=Rn.32514 /UG_TITLE=ESTs AA944330 CDC42 small effector 2 Cdc42se2 691031 NM_001126089 0006909 // phagocytosis // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0009966 // regulation of signal transduction // not recorded /// 0009966 // regulation of signal transduction // inferred from sequence or structural similarity /// 0009966 // regulation of signal transduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005198 // structural molecule activity // not recorded /// 0005198 // structural molecule activity // inferred from sequence or structural similarity /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392543_at BI293462 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293462 /DB_XREF=gi:14954969 /DB_XREF=UI-R-DK0-cdq-f-12-0-UI.s1 /CLONE=UI-R-DK0-cdq-f-12-0-UI /FEA=EST /CNT=6 /TID=Rn.7745.1 /TIER=ConsEnd /STK=1 /UG=Rn.7745 /UG_TITLE=ESTs, Moderately similar to RB48 MOUSE CHROMATIN ASSEMBLY FACTOR 1 P48 SUBUNIT (M.musculus) BI293462 retinoblastoma binding protein 4 /// similar to retinoblastoma binding protein 4 Rbbp4 /// RGD1563620 310511 /// 313048 NM_001107912 /// XM_001062166 /// XM_002725980 /// XM_002729044 /// XM_227252 1392544_at AI044879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044879 /DB_XREF=gi:3291698 /DB_XREF=UI-R-C1-kd-g-10-0-UI.s1 /CLONE=UI-R-C1-kd-g-10-0-UI /FEA=EST /CNT=6 /TID=Rn.18033.1 /TIER=ConsEnd /STK=1 /UG=Rn.18033 /UG_TITLE=ESTs, Weakly similar to YN28_YEAST HYPOTHETICAL 41.2 KD PROTEIN IN PLC1-SEC21 INTERGENIC REGION (S.cerevisiae) AI044879 rcd1 (required for cell differentiation) homolog 1 (S. pombe) Rqcd1 301513 NM_001009357 0006350 // transcription // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392545_at AA999089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA999089 /DB_XREF=gi:4293942 /DB_XREF=UI-R-C0-in-e-01-0-UI.s1 /CLONE=UI-R-C0-in-e-01-0-UI /FEA=EST /CNT=6 /TID=Rn.12263.1 /TIER=ConsEnd /STK=1 /UG=Rn.12263 /UG_TITLE=ESTs AA999089 transcription factor AP-2 beta Tcfap2b 301285 NM_001106896 0001822 // kidney development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0010226 // response to lithium ion // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0045817 // positive regulation of transcription from RNA polymerase II promoter, global // not recorded 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0046983 // protein dimerization activity // not recorded 1392546_at AI145332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145332 /DB_XREF=gi:3667179 /DB_XREF=UI-R-BT0-qe-d-03-0-UI.s1 /CLONE=UI-R-BT0-qe-d-03-0-UI /FEA=EST /CNT=6 /TID=Rn.24013.1 /TIER=ConsEnd /STK=1 /UG=Rn.24013 /UG_TITLE=ESTs AI145332 1392547_at AI716211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716211 /DB_XREF=gi:5033464 /DB_XREF=UI-R-Y0-abr-a-06-0-UI.s1 /CLONE=UI-R-Y0-abr-a-06-0-UI /FEA=EST /CNT=6 /TID=Rn.15927.1 /TIER=ConsEnd /STK=1 /UG=Rn.15927 /UG_TITLE=ESTs, Weakly similar to NUML MOUSE NADH-UBIQUINONE OXIDOREDUCTASE MLRQ SUBUNIT (M.musculus) AI716211 hypothetical LOC302884 MGC105649 302884 NM_001008518 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1392548_at BF394282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394282 /DB_XREF=gi:11379146 /DB_XREF=UI-R-CA0-bgr-b-03-0-UI.s1 /CLONE=UI-R-CA0-bgr-b-03-0-UI /FEA=EST /CNT=6 /TID=Rn.51454.1 /TIER=ConsEnd /STK=1 /UG=Rn.51454 /UG_TITLE=ESTs, Weakly similar to T44598 hypothetical protein (imported) - fruit fly (Drosophila melanogaster) (D.melanogaster) BF394282 CWC22 spliceosome-associated protein homolog (S. cerevisiae) /// hypothetical protein LOC500684 Cwc22 /// LOC500684 362153 /// 500684 NM_001047959 /// XM_001062863 /// XM_342453 0016070 // RNA metabolic process // inferred from electronic annotation 0005681 // spliceosomal complex // not recorded 0003723 // RNA binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392549_at AA875587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875587 /DB_XREF=gi:4231466 /DB_XREF=UI-R-E0-cv-a-02-0-UI.s1 /CLONE=UI-R-E0-cv-a-02-0-UI /FEA=EST /CNT=6 /TID=Rn.21414.1 /TIER=ConsEnd /STK=1 /UG=Rn.21414 /UG_TITLE=ESTs AA875587 1392550_at BE111725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111725 /DB_XREF=gi:8503830 /DB_XREF=UI-R-BJ1-avx-a-12-0-UI.s1 /CLONE=UI-R-BJ1-avx-a-12-0-UI /FEA=EST /CNT=6 /TID=Rn.17371.1 /TIER=ConsEnd /STK=1 /UG=Rn.17371 /UG_TITLE=ESTs BE111725 Dapper, antagonist of beta-catenin, homolog 1 (Xenopus laevis) Dact1 500666 XM_001077448 /// XM_002726752 /// XM_002729635 /// XM_576044 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded 1392551_at AI104921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104921 /DB_XREF=gi:4134298 /DB_XREF=EST214210 /CLONE=RHECL29 /FEA=EST /CNT=6 /TID=Rn.23027.1 /TIER=ConsEnd /STK=1 /UG=Rn.23027 /UG_TITLE=ESTs AI104921 Zinc finger protein ZFP LOC503192 503192 XM_001077756 /// XM_578715 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1392552_at BE109744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109744 /DB_XREF=gi:8501849 /DB_XREF=UI-R-BJ1-aup-f-05-0-UI.s1 /CLONE=UI-R-BJ1-aup-f-05-0-UI /FEA=EST /CNT=6 /TID=Rn.54954.1 /TIER=ConsEnd /STK=1 /UG=Rn.54954 /UG_TITLE=ESTs BE109744 GATA zinc finger domain containing 2B Gatad2b 310614 NM_001024888 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1392553_at BF412281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412281 /DB_XREF=gi:11400270 /DB_XREF=UI-R-BT1-bnb-f-06-0-UI.s1 /CLONE=UI-R-BT1-bnb-f-06-0-UI /FEA=EST /CNT=6 /TID=Rn.13813.1 /TIER=ConsEnd /STK=1 /UG=Rn.13813 /UG_TITLE=ESTs, Weakly similar to ATS4_RAT ADAMTS-4 precursor (A disintegrin and metalloproteinase with thrombospondin motifs 4) (ADAM-TS 4) (ADAM-TS4) (Aggrecanase 1) (Fragment) (R.norvegicus) BF412281 ADAMTS-like 5 Adamtsl5 314626 NM_001108071 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1392554_a_at AW915435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915435 /DB_XREF=gi:8081131 /DB_XREF=EST346739 /CLONE=RGICV38 /FEA=EST /CNT=1 /TID=Rn.17556.2 /TIER=ConsEnd /STK=0 /UG=Rn.17556 /UG_TITLE=ESTs AW915435 1392555_at AI112936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112936 /DB_XREF=gi:3512885 /DB_XREF=UI-R-A1-es-f-10-0-UI.s1 /CLONE=UI-R-A1-es-f-10-0-UI /FEA=EST /CNT=7 /TID=Rn.21155.2 /TIER=ConsEnd /STK=1 /UG=Rn.21155 /UG_TITLE=ESTs, Highly similar to ETV1 MOUSE ER81 PROTEIN (M.musculus) AI112936 Ets variant 1 Etv1 362733 NM_001108709 /// NM_001163156 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007517 // muscle organ development // not recorded /// 0007638 // mechanosensory behavior // not recorded /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1392556_at BF410961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410961 /DB_XREF=gi:11398936 /DB_XREF=UI-R-CN0-bmi-a-11-0-UI.s1 /CLONE=UI-R-CN0-bmi-a-11-0-UI /FEA=EST /CNT=6 /TID=Rn.15243.1 /TIER=ConsEnd /STK=1 /UG=Rn.15243 /UG_TITLE=ESTs BF410961 shroom family member 3 Shroom3 305230 NM_001100889 0000902 // cell morphogenesis // inferred from sequence or structural similarity /// 0001843 // neural tube closure // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0002066 // columnar/cuboidal epithelial cell development // inferred from electronic annotation /// 0002066 // columnar/cuboidal epithelial cell development // not recorded /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0043482 // cellular pigment accumulation // inferred from sequence or structural similarity /// 0045176 // apical protein localization // inferred from sequence or structural similarity 0005856 // cytoskeleton // inferred from electronic annotation /// 0005856 // cytoskeleton // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0043296 // apical junction complex // inferred from electronic annotation /// 0043296 // apical junction complex // not recorded /// 0045177 // apical part of cell // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded 1392557_at BF389151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389151 /DB_XREF=gi:11373979 /DB_XREF=UI-R-BS2-bdl-d-06-0-UI.s1 /CLONE=UI-R-BS2-bdl-d-06-0-UI /FEA=EST /CNT=6 /TID=Rn.23854.1 /TIER=ConsEnd /STK=1 /UG=Rn.23854 /UG_TITLE=ESTs BF389151 1392558_at AI101600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101600 /DB_XREF=gi:4134024 /DB_XREF=EST210889 /CLONE=RBRBS74 /FEA=EST /CNT=6 /TID=Rn.24394.1 /TIER=ConsEnd /STK=1 /UG=Rn.24394 /UG_TITLE=ESTs, Moderately similar to T17342 hypothetical protein DKFZp586K1924.1 (H.sapiens) AI101600 protein phosphatase 2, regulatory subunit B', epsilon isoform Ppp2r5e 299147 NM_001106740 0007165 // signal transduction // inferred from electronic annotation 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008601 // protein phosphatase type 2A regulator activity // inferred from electronic annotation 1392559_at BM383442 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383442 /DB_XREF=gi:18183495 /DB_XREF=UI-R-DM1-ckb-j-24-0-UI.s1 /CLONE=UI-R-DM1-ckb-j-24-0-UI /FEA=EST /CNT=6 /TID=Rn.56018.1 /TIER=ConsEnd /STK=1 /UG=Rn.56018 /UG_TITLE=ESTs, Weakly similar to KIAA0701 protein (H.sapiens) BM383442 UHRF1 binding protein 1-like Uhrf1bp1l 363009 NM_001108753 1392560_at BG153281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG153281 /DB_XREF=gi:12665311 /DB_XREF=nag11e08.x1 /CLONE=IMAGE:4176086 /FEA=EST /CNT=6 /TID=Rn.1836.1 /TIER=ConsEnd /STK=1 /UG=Rn.1836 /UG_TITLE=ESTs BG153281 phosphatidylinositol-4-phosphate 5-kinase, type 1, alpha Pip5k1a 365865 NM_001042621 0046488 // phosphatidylinositol metabolic process // inferred from electronic annotation 0016307 // phosphatidylinositol phosphate kinase activity // inferred from electronic annotation 1392561_at BF396279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396279 /DB_XREF=gi:11381251 /DB_XREF=UI-R-BS2-bdw-c-11-0-UI.s1 /CLONE=UI-R-BS2-bdw-c-11-0-UI /FEA=EST /CNT=6 /TID=Rn.50470.1 /TIER=ConsEnd /STK=1 /UG=Rn.50470 /UG_TITLE=ESTs, Weakly similar to neurofilament triplet H protein (R.norvegicus) BF396279 TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor LOC100360100 100360100 XM_002725301 /// XM_002728492 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392562_at BM391400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391400 /DB_XREF=gi:18191453 /DB_XREF=UI-R-DY0-ckq-n-10-0-UI.s1 /CLONE=UI-R-DY0-ckq-n-10-0-UI /FEA=EST /CNT=6 /TID=Rn.34555.1 /TIER=ConsEnd /STK=1 /UG=Rn.34555 /UG_TITLE=ESTs BM391400 family with sequence similarity 128, member B Fam128b 287929 NM_001105860 0005813 // centrosome // not recorded /// 0005819 // spindle // not recorded /// 0008274 // gamma-tubulin ring complex // not recorded 0005515 // protein binding // not recorded 1392563_at AW252517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252517 /DB_XREF=gi:6596108 /DB_XREF=UI-R-BJ0-ada-e-02-0-UI.s1 /CLONE=UI-R-BJ0-ada-e-02-0-UI /FEA=EST /CNT=6 /TID=Rn.30314.1 /TIER=ConsEnd /STK=1 /UG=Rn.30314 /UG_TITLE=ESTs AW252517 proline rich 5 (renal) Prr5 315189 NM_001012121 0007049 // cell cycle // inferred from electronic annotation 1392564_at BI299176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299176 /DB_XREF=gi:14975456 /DB_XREF=UI-R-CV2-chs-b-01-0-UI.s1 /CLONE=UI-R-CV2-chs-b-01-0-UI /FEA=EST /CNT=6 /TID=Rn.20490.1 /TIER=ConsEnd /STK=1 /UG=Rn.20490 /UG_TITLE=ESTs, Weakly similar to SH3 domain binding protein (R.norvegicus) BI299176 myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila) Mll5 311968 XM_001059700 /// XM_231287 0002446 // neutrophil mediated immunity // inferred from electronic annotation /// 0006306 // DNA methylation // inferred from electronic annotation /// 0016571 // histone methylation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0032526 // response to retinoic acid // inferred from electronic annotation /// 0042119 // neutrophil activation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0048384 // retinoic acid receptor signaling pathway // inferred from electronic annotation 0070688 // MLL5-L complex // inferred from electronic annotation 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0042800 // histone methyltransferase activity (H3-K4 specific) // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392565_at BI290365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290365 /DB_XREF=gi:14948862 /DB_XREF=UI-R-DK0-cfv-d-07-0-UI.s1 /CLONE=UI-R-DK0-cfv-d-07-0-UI /FEA=EST /CNT=6 /TID=Rn.22871.1 /TIER=ConsEnd /STK=1 /UG=Rn.22871 /UG_TITLE=ESTs BI290365 PTPRF interacting protein, binding protein 1 (liprin beta 1) Ppfibp1 312855 NM_001107896 0005515 // protein binding // not recorded 1392566_at AA957811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957811 /DB_XREF=gi:4277701 /DB_XREF=UI-R-E1-fz-a-11-0-UI.s1 /CLONE=UI-R-E1-fz-a-11-0-UI /FEA=EST /CNT=6 /TID=Rn.6545.1 /TIER=ConsEnd /STK=1 /UG=Rn.6545 /UG_TITLE=ESTs AA957811 1392567_at AI556652 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556652 /DB_XREF=gi:4489015 /DB_XREF=UI-R-C2p-ri-h-05-0-UI.s1 /CLONE=UI-R-C2p-ri-h-05-0-UI /FEA=EST /CNT=6 /TID=Rn.23366.1 /TIER=ConsEnd /STK=1 /UG=Rn.23366 /UG_TITLE=ESTs AI556652 1392568_at BE111277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111277 /DB_XREF=gi:8503382 /DB_XREF=UI-R-BJ1-auw-h-08-0-UI.s1 /CLONE=UI-R-BJ1-auw-h-08-0-UI /FEA=EST /CNT=6 /TID=Rn.14073.1 /TIER=ConsEnd /STK=1 /UG=Rn.14073 /UG_TITLE=ESTs BE111277 similar to TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor RGD1562272 303433 XM_001081219 /// XM_220843 0006367 // transcription initiation from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation 1392569_at AA955871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955871 /DB_XREF=gi:4238266 /DB_XREF=UI-R-E1-ff-g-06-0-UI.s1 /CLONE=UI-R-E1-ff-g-06-0-UI /FEA=EST /CNT=6 /TID=Rn.25124.2 /TIER=ConsEnd /STK=1 /UG=Rn.25124 /UG_TITLE=ESTs AA955871 1392570_at BI295850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295850 /DB_XREF=gi:14959710 /DB_XREF=UI-R-DK0-cfb-d-06-0-UI.s1 /CLONE=UI-R-DK0-cfb-d-06-0-UI /FEA=EST /CNT=5 /TID=Rn.71265.1 /TIER=ConsEnd /STK=1 /UG=Rn.71265 /UG_TITLE=ESTs, Weakly similar to 70 KD PEROXISOMAL MEMBRANE PROTEIN (R.norvegicus) BI295850 ATP-binding cassette, sub-family D (ALD), member 4 Abcd4 299196 NM_001013100 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 1392571_at AA899216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899216 /DB_XREF=gi:4231713 /DB_XREF=UI-R-E0-bp-g-10-0-UI.s2 /CLONE=UI-R-E0-bp-g-10-0-UI /FEA=EST /CNT=5 /TID=Rn.14908.1 /TIER=ConsEnd /STK=1 /UG=Rn.14908 /UG_TITLE=ESTs AA899216 vacuolar protein sorting 13 homolog A (S. cerevisiae) Vps13a 309243 NM_001100975 0007399 // nervous system development // not recorded /// 0007626 // locomotory behavior // not recorded /// 0008104 // protein localization // inferred from electronic annotation /// 0035176 // social behavior // not recorded 0005515 // protein binding // not recorded 1392572_at BI282339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282339 /DB_XREF=gi:14933009 /DB_XREF=UI-R-CU0s-cbz-d-11-0-UI.s1 /CLONE=UI-R-CU0s-cbz-d-11-0-UI /FEA=EST /CNT=5 /TID=Rn.23911.1 /TIER=ConsEnd /STK=1 /UG=Rn.23911 /UG_TITLE=ESTs, Moderately similar to A Chain A, Musashi1 Rbd2, Nmr (M.musculus) BI282339 Musashi homolog 2 (Drosophila) Msi2 360596 XM_001081205 /// XM_340876 0048864 // stem cell development // not recorded 0005737 // cytoplasm // not recorded /// 0005844 // polysome // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003727 // single-stranded RNA binding // not recorded /// 0008266 // poly(U) RNA binding // not recorded 1392573_at BF284538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284538 /DB_XREF=gi:11215608 /DB_XREF=EST449129 /CLONE=RGIER77 /FEA=EST /CNT=5 /TID=Rn.38479.1 /TIER=ConsEnd /STK=1 /UG=Rn.38479 /UG_TITLE=ESTs BF284538 ubiquitin-conjugating enzyme E2A (RAD6 homolog) Ube2a 298317 NM_001013933 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006281 // DNA repair // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0009411 // response to UV // inferred from electronic annotation /// 0009411 // response to UV // not recorded /// 0033522 // histone H2A ubiquitination // inferred from electronic annotation /// 0033522 // histone H2A ubiquitination // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051865 // protein autoubiquitination // inferred from electronic annotation /// 0051865 // protein autoubiquitination // not recorded /// 0060135 // maternal process involved in female pregnancy // inferred from electronic annotation /// 0060135 // maternal process involved in female pregnancy // not recorded /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0070979 // protein K11-linked ubiquitination // not recorded 0000785 // chromatin // not recorded /// 0000785 // chromatin // inferred from electronic annotation /// 0000790 // nuclear chromatin // inferred from electronic annotation /// 0000790 // nuclear chromatin // not recorded /// 0001741 // XY body // inferred from electronic annotation /// 0001741 // XY body // not recorded 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded 1392574_at AI013120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013120 /DB_XREF=gi:3227176 /DB_XREF=EST207795 /CLONE=RSPBG83 /FEA=EST /CNT=5 /TID=Rn.13149.1 /TIER=ConsEnd /STK=1 /UG=Rn.13149 /UG_TITLE=ESTs AI013120 zinc finger protein 287 Znf287 303212 NM_001107008 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0042035 // regulation of cytokine biosynthetic process // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1392575_at BE108929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108929 /DB_XREF=gi:8501034 /DB_XREF=UI-R-BS1-aza-a-07-0-UI.s1 /CLONE=UI-R-BS1-aza-a-07-0-UI /FEA=EST /CNT=5 /TID=Rn.29452.1 /TIER=ConsEnd /STK=1 /UG=Rn.29452 /UG_TITLE=ESTs BE108929 Zinc finger protein 654 Znf654 288354 XM_001063334 /// XM_237855 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1392576_at AI175445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175445 /DB_XREF=gi:3726083 /DB_XREF=EST218992 /CLONE=RMUCN57 /FEA=EST /CNT=5 /TID=Rn.7605.1 /TIER=ConsEnd /STK=1 /UG=Rn.7605 /UG_TITLE=ESTs, Weakly similar to C33A12.3.p (Caenorhabditis elegans) (C.elegans) AI175445 similar to protein C33A12.3 RGD1359508 361941 NM_001009707 1392577_at AA925300 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925300 /DB_XREF=gi:4236491 /DB_XREF=UI-R-A1-ek-e-06-0-UI.s1 /CLONE=UI-R-A1-ek-e-06-0-UI /FEA=EST /CNT=5 /TID=Rn.32659.1 /TIER=ConsEnd /STK=1 /UG=Rn.32659 /UG_TITLE=ESTs, Weakly similar to M3K1 RAT MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 1 (R.norvegicus) AA925300 mitogen activated protein kinase kinase kinase 3 Map3k3 303604 NM_001107058 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0046777 // protein autophosphorylation // not recorded 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1392578_at AI070875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070875 /DB_XREF=gi:3397126 /DB_XREF=UI-R-C2-ms-e-01-0-UI.s1 /CLONE=UI-R-C2-ms-e-01-0-UI /FEA=EST /CNT=5 /TID=Rn.21366.1 /TIER=ConsEnd /STK=1 /UG=Rn.21366 /UG_TITLE=ESTs AI070875 1392579_at BI295501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295501 /DB_XREF=gi:14959002 /DB_XREF=UI-R-DK0-cev-b-02-0-UI.s1 /CLONE=UI-R-DK0-cev-b-02-0-UI /FEA=EST /CNT=5 /TID=Rn.21433.1 /TIER=ConsEnd /STK=1 /UG=Rn.21433 /UG_TITLE=ESTs BI295501 oligonucleotide/oligosaccharide-binding fold containing 2A Obfc2a 363227 NM_001014216 0000724 // double-strand break repair via homologous recombination // not recorded /// 0000724 // double-strand break repair via homologous recombination // inferred from sequence or structural similarity /// 0000724 // double-strand break repair via homologous recombination // inferred from electronic annotation /// 0006281 // DNA repair // not recorded /// 0006281 // DNA repair // inferred from sequence or structural similarity /// 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0006974 // response to DNA damage stimulus // inferred from sequence or structural similarity /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010212 // response to ionizing radiation // not recorded /// 0010212 // response to ionizing radiation // inferred from sequence or structural similarity /// 0010212 // response to ionizing radiation // inferred from electronic annotation /// 0031576 // G2/M transition checkpoint // not recorded /// 0031576 // G2/M transition checkpoint // inferred from sequence or structural similarity /// 0031576 // G2/M transition checkpoint // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0070876 // SOSS complex // not recorded /// 0070876 // SOSS complex // inferred from sequence or structural similarity /// 0070876 // SOSS complex // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // not recorded /// 0003697 // single-stranded DNA binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded 1392580_at BF282184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282184 /DB_XREF=gi:11213254 /DB_XREF=EST446775 /CLONE=RGIDF33 /FEA=EST /CNT=5 /TID=Rn.25529.1 /TIER=ConsEnd /STK=1 /UG=Rn.25529 /UG_TITLE=ESTs BF282184 1392581_at BF420172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420172 /DB_XREF=gi:11408161 /DB_XREF=UI-R-BJ2-bpj-g-08-0-UI.s1 /CLONE=UI-R-BJ2-bpj-g-08-0-UI /FEA=EST /CNT=5 /TID=Rn.63687.1 /TIER=ConsEnd /STK=1 /UG=Rn.63687 /UG_TITLE=ESTs, Highly similar to HIPP RAT NEURON SPECIFIC CALCIUM-BINDING PROTEIN HIPPOCALCIN (R.norvegicus) BF420172 neurocalcin delta Ncald 553106 NM_001024371 0005622 // intracellular // not recorded /// 0005829 // cytosol // not recorded 0003779 // actin binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0015631 // tubulin binding // not recorded /// 0030276 // clathrin binding // not recorded 1392582_at AA819053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819053 /DB_XREF=gi:4227718 /DB_XREF=UI-R-A0-ba-g-10-0-UI.s1 /CLONE=UI-R-A0-ba-g-10-0-UI /FEA=EST /CNT=5 /TID=Rn.24122.1 /TIER=ConsEnd /STK=1 /UG=Rn.24122 /UG_TITLE=ESTs AA819053 1392583_at AI008140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008140 /DB_XREF=gi:4132860 /DB_XREF=EST202591 /CLONE=REMAT41 /FEA=EST /CNT=5 /TID=Rn.13783.1 /TIER=ConsEnd /STK=1 /UG=Rn.13783 /UG_TITLE=ESTs AI008140 1392584_at BF415201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415201 /DB_XREF=gi:11403190 /DB_XREF=UI-R-BJ2-boz-b-05-0-UI.s1 /CLONE=UI-R-BJ2-boz-b-05-0-UI /FEA=EST /CNT=5 /TID=Rn.15877.1 /TIER=ConsEnd /STK=1 /UG=Rn.15877 /UG_TITLE=ESTs BF415201 1392585_at AI072302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072302 /DB_XREF=gi:3398496 /DB_XREF=UI-R-C2-ng-a-09-0-UI.s1 /CLONE=UI-R-C2-ng-a-09-0-UI /FEA=EST /CNT=5 /TID=Rn.19991.1 /TIER=ConsEnd /STK=1 /UG=Rn.19991 /UG_TITLE=ESTs AI072302 1392586_at AI704512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI704512 /DB_XREF=gi:4992412 /DB_XREF=UI-R-AC0-yo-h-10-0-UI.s1 /CLONE=UI-R-AC0-yo-h-10-0-UI /FEA=EST /CNT=5 /TID=Rn.6471.1 /TIER=ConsEnd /STK=1 /UG=Rn.6471 /UG_TITLE=ESTs AI704512 MU-2/AP1M2 domain containing, death-inducing Mudeng 305861 NM_001030036 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0030131 // clathrin adaptor complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1392587_at BE115141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115141 /DB_XREF=gi:8507246 /DB_XREF=UI-R-BS1-axt-g-03-0-UI.s1 /CLONE=UI-R-BS1-axt-g-03-0-UI /FEA=EST /CNT=5 /TID=Rn.51225.1 /TIER=ConsEnd /STK=1 /UG=Rn.51225 /UG_TITLE=ESTs BE115141 1392588_at BG664535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664535 /DB_XREF=gi:13886457 /DB_XREF=DRABFB04 /CLONE=DRABFB04 /FEA=EST /CNT=5 /TID=Rn.32539.1 /TIER=ConsEnd /STK=1 /UG=Rn.32539 /UG_TITLE=ESTs BG664535 dual serine/threonine and tyrosine protein kinase Dstyk 304791 NM_199463 0006468 // protein phosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1392589_at AA866296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866296 /DB_XREF=gi:4229406 /DB_XREF=UI-R-A0-ac-f-08-0-UI.s3 /CLONE=UI-R-A0-ac-f-08-0-UI /FEA=EST /CNT=5 /TID=Rn.43964.1 /TIER=ConsEnd /STK=1 /UG=Rn.43964 /UG_TITLE=ESTs AA866296 replication factor C (activator 1) 5 Rfc5 304528 NM_001107146 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded /// 0006297 // nucleotide-excision repair, DNA gap filling // not recorded 0005654 // nucleoplasm // not recorded /// 0005663 // DNA replication factor C complex // inferred from electronic annotation /// 0005663 // DNA replication factor C complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003689 // DNA clamp loader activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1392590_at BG377201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377201 /DB_XREF=gi:13301673 /DB_XREF=UI-R-CU0-bvb-f-11-0-UI.s1 /CLONE=UI-R-CU0-bvb-f-11-0-UI /FEA=EST /CNT=5 /TID=Rn.13264.1 /TIER=ConsEnd /STK=1 /UG=Rn.13264 /UG_TITLE=ESTs BG377201 Rho GTPase activating protein 24 Arhgap24 305156 NM_001012032 0001525 // angiogenesis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392591_at AI170983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170983 /DB_XREF=gi:3711023 /DB_XREF=EST216927 /CLONE=RMUBE43 /FEA=EST /CNT=5 /TID=Rn.9502.2 /TIER=ConsEnd /STK=1 /UG=Rn.9502 /UG_TITLE=ESTs AI170983 Similar to RIKEN cDNA 5830433M19 MGC125002 500501 NM_001034154 1392592_at AI137045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137045 /DB_XREF=gi:3637822 /DB_XREF=UI-R-C2p-oj-c-03-0-UI.s1 /CLONE=UI-R-C2p-oj-c-03-0-UI /FEA=EST /CNT=5 /TID=Rn.22251.2 /TIER=ConsEnd /STK=1 /UG=Rn.22251 /UG_TITLE=ESTs AI137045 Similar to transcription factor 7-like 2, T-cell specific, HMG-box LOC679869 679869 NM_001191052 /// XM_001054844 /// XM_001072143 /// XM_001072429 /// XM_001072472 /// XM_001072554 /// XM_002725792 /// XM_002725793 0001568 // blood vessel development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0008283 // cell proliferation // not recorded /// 0009749 // response to glucose stimulus // not recorded /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0010909 // positive regulation of heparan sulfate proteoglycan biosynthetic process // not recorded /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0021915 // neural tube development // not recorded /// 0030538 // embryonic genitalia morphogenesis // not recorded /// 0032024 // positive regulation of insulin secretion // not recorded /// 0032092 // positive regulation of protein binding // not recorded /// 0032350 // regulation of hormone metabolic process // not recorded /// 0035019 // somatic stem cell maintenance // not recorded /// 0042593 // glucose homeostasis // not recorded /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0043570 // maintenance of DNA repeat elements // not recorded /// 0045444 // fat cell differentiation // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046827 // positive regulation of protein export from nucleus // not recorded /// 0048557 // embryonic digestive tract morphogenesis // not recorded /// 0048619 // embryonic hindgut morphogenesis // not recorded /// 0048625 // myoblast cell fate commitment // not recorded /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // not recorded /// 0005829 // cytosol // not recorded /// 0032993 // protein-DNA complex // not recorded /// 0070369 // beta-catenin-TCF7L2 complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008013 // beta-catenin binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0019901 // protein kinase binding // not recorded /// 0035257 // nuclear hormone receptor binding // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0045295 // gamma-catenin binding // not recorded 1392593_a_at AI555789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555789 /DB_XREF=gi:4488152 /DB_XREF=UI-R-C2p-qz-b-05-0-UI.s1 /CLONE=UI-R-C2p-qz-b-05-0-UI /FEA=EST /CNT=5 /TID=Rn.22234.2 /TIER=ConsEnd /STK=1 /UG=Rn.22234 /UG_TITLE=ESTs AI555789 proline rich 12 Prr12 361569 XM_001080668 /// XM_341852 0003677 // DNA binding // inferred from electronic annotation 1392594_at AI136409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136409 /DB_XREF=gi:3637186 /DB_XREF=UI-R-C2p-od-g-05-0-UI.s1 /CLONE=UI-R-C2p-od-g-05-0-UI /FEA=EST /CNT=5 /TID=Rn.23679.1 /TIER=ConsEnd /STK=1 /UG=Rn.23679 /UG_TITLE=ESTs AI136409 sushi domain containing 2 Susd2 294335 NM_001106381 0006955 // immune response // inferred from electronic annotation 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030247 // polysaccharide binding // inferred from electronic annotation 1392595_at AI228656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228656 /DB_XREF=gi:3812543 /DB_XREF=EST225351 /CLONE=RBRCX69 /FEA=EST /CNT=5 /TID=Rn.25240.1 /TIER=ConsEnd /STK=1 /UG=Rn.25240 /UG_TITLE=ESTs AI228656 zinc finger protein 618 Znf618 313253 XM_001064168 /// XM_233016 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1392596_at BF420447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420447 /DB_XREF=gi:11408476 /DB_XREF=UI-R-BJ2-bpw-e-12-0-UI.s1 /CLONE=UI-R-BJ2-bpw-e-12-0-UI /FEA=EST /CNT=5 /TID=Rn.19996.1 /TIER=ConsEnd /STK=1 /UG=Rn.19996 /UG_TITLE=ESTs BF420447 1392597_at BG670559 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670559 /DB_XREF=gi:13892658 /DB_XREF=DRNBCF04 /CLONE=DRNBCF04 /FEA=EST /CNT=5 /TID=Rn.18034.2 /TIER=ConsEnd /STK=1 /UG=Rn.18034 /UG_TITLE=ESTs BG670559 allograft inflammatory factor 1-like Aif1l 362107 NM_001108578 0005884 // actin filament // not recorded /// 0005925 // focal adhesion // not recorded /// 0015629 // actin cytoskeleton // not recorded /// 0043234 // protein complex // inferred from direct assay 0005509 // calcium ion binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1392598_at AA899326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899326 /DB_XREF=gi:4231823 /DB_XREF=UI-R-E0-cz-c-07-0-UI.s1 /CLONE=UI-R-E0-cz-c-07-0-UI /FEA=EST /CNT=5 /TID=Rn.3749.1 /TIER=ConsEnd /STK=1 /UG=Rn.3749 /UG_TITLE=ESTs AA899326 1392599_at BE111132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111132 /DB_XREF=gi:8503237 /DB_XREF=UI-R-BJ1-auv-a-02-0-UI.s1 /CLONE=UI-R-BJ1-auv-a-02-0-UI /FEA=EST /CNT=5 /TID=Rn.20029.1 /TIER=ConsEnd /STK=1 /UG=Rn.20029 /UG_TITLE=ESTs BE111132 synapse associated protein 1 Syap1 302678 NM_001004253 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 1392600_a_at AI176989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176989 /DB_XREF=gi:4134943 /DB_XREF=EST220595 /CLONE=ROVBZ45 /FEA=EST /CNT=1 /TID=Rn.13751.2 /TIER=ConsEnd /STK=1 /UG=Rn.13751 /UG_TITLE=ESTs AI176989 1392601_at AI030043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030043 /DB_XREF=gi:3247869 /DB_XREF=UI-R-C0-ja-h-01-0-UI.s1 /CLONE=UI-R-C0-ja-h-01-0-UI /FEA=EST /CNT=5 /TID=Rn.17307.1 /TIER=ConsEnd /STK=1 /UG=Rn.17307 /UG_TITLE=ESTs AI030043 1392602_at BF290959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290959 /DB_XREF=gi:11222029 /DB_XREF=EST455550 /CLONE=RGIIG85 /FEA=EST /CNT=5 /TID=Rn.24675.1 /TIER=ConsEnd /STK=1 /UG=Rn.24675 /UG_TITLE=ESTs, Weakly similar to C17G10.4a.p (Caenorhabditis elegans) (C.elegans) BF290959 CDC14 cell division cycle 14 homolog B (S. cerevisiae) Cdc14b 361195 NM_001108404 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0031572 // G2/M transition DNA damage checkpoint // not recorded /// 0051488 // activation of anaphase-promoting complex activity // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded 0004722 // protein serine/threonine phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1392603_at AI717425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717425 /DB_XREF=gi:5034681 /DB_XREF=UI-R-Y0-aco-h-11-0-UI.s1 /CLONE=UI-R-Y0-aco-h-11-0-UI /FEA=EST /CNT=5 /TID=Rn.38998.1 /TIER=ConsEnd /STK=1 /UG=Rn.38998 /UG_TITLE=ESTs AI717425 1392604_at AA997187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997187 /DB_XREF=gi:4282185 /DB_XREF=UI-R-C0-hs-g-12-0-UI.s1 /CLONE=UI-R-C0-hs-g-12-0-UI /FEA=EST /CNT=5 /TID=Rn.12640.1 /TIER=ConsEnd /STK=1 /UG=Rn.12640 /UG_TITLE=ESTs AA997187 1392605_at AI071973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071973 /DB_XREF=gi:3398167 /DB_XREF=UI-R-C2-nl-g-02-0-UI.s1 /CLONE=UI-R-C2-nl-g-02-0-UI /FEA=EST /CNT=5 /TID=Rn.21423.1 /TIER=ConsEnd /STK=1 /UG=Rn.21423 /UG_TITLE=ESTs AI071973 1392606_at AI030628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030628 /DB_XREF=gi:3248454 /DB_XREF=UI-R-C0-jh-g-07-0-UI.s1 /CLONE=UI-R-C0-jh-g-07-0-UI /FEA=EST /CNT=5 /TID=Rn.17264.1 /TIER=ConsEnd /STK=1 /UG=Rn.17264 /UG_TITLE=ESTs AI030628 1392607_at BF391141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391141 /DB_XREF=gi:11375988 /DB_XREF=UI-R-CA1-bcd-g-02-0-UI.s1 /CLONE=UI-R-CA1-bcd-g-02-0-UI /FEA=EST /CNT=5 /TID=Rn.22747.1 /TIER=ConsEnd /STK=1 /UG=Rn.22747 /UG_TITLE=ESTs BF391141 1392608_at AI030154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030154 /DB_XREF=gi:3247980 /DB_XREF=UI-R-C0-jn-g-10-0-UI.s1 /CLONE=UI-R-C0-jn-g-10-0-UI /FEA=EST /CNT=5 /TID=Rn.18419.1 /TIER=ConsEnd /STK=1 /UG=Rn.18419 /UG_TITLE=ESTs AI030154 1392609_at AI030518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030518 /DB_XREF=gi:3248344 /DB_XREF=UI-R-C0-ji-b-02-0-UI.s1 /CLONE=UI-R-C0-ji-b-02-0-UI /FEA=EST /CNT=5 /TID=Rn.21599.1 /TIER=ConsEnd /STK=1 /UG=Rn.21599 /UG_TITLE=ESTs AI030518 1392610_at AI176588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176588 /DB_XREF=gi:4134898 /DB_XREF=EST220176 /CLONE=ROVBU22 /FEA=EST /CNT=7 /TID=Rn.13162.1 /TIER=ConsEnd /STK=1 /UG=Rn.13162 /UG_TITLE=ESTs AI176588 topoisomerase I binding, arginine/serine-rich Topors 362501 NM_001108658 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0006915 // apoptosis // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0008630 // DNA damage response, signal transduction resulting in induction of apoptosis // not recorded /// 0016925 // protein sumoylation // not recorded /// 0034504 // protein localization in nucleus // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0051457 // maintenance of protein location in nucleus // not recorded 0005634 // nucleus // not recorded /// 0016605 // PML body // not recorded /// 0016607 // nuclear speck // not recorded 0003677 // DNA binding // not recorded /// 0003823 // antigen binding // not recorded /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0017033 // DNA topoisomerase I binding // not recorded /// 0019789 // SUMO ligase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1392611_at BE117629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117629 /DB_XREF=gi:8509734 /DB_XREF=UI-R-BS1-aze-a-10-0-UI.s1 /CLONE=UI-R-BS1-aze-a-10-0-UI /FEA=EST /CNT=6 /TID=Rn.23119.2 /TIER=ConsEnd /STK=1 /UG=Rn.23119 /UG_TITLE=ESTs BE117629 Teashirt zinc finger homeobox 1 Tshz1 307217 XM_001060440 /// XM_225688 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0042474 // middle ear morphogenesis // not recorded /// 0060023 // soft palate development // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1392612_at AW142962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142962 /DB_XREF=gi:6162861 /DB_XREF=EST293254 /CLONE=RGIBA50 /FEA=EST /CNT=6 /TID=Rn.25387.1 /TIER=ConsEnd /STK=1 /UG=Rn.25387 /UG_TITLE=ESTs AW142962 1392613_at AA942745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA942745 /DB_XREF=gi:3102661 /DB_XREF=EST198244 /CLONE=RBRAA58 /FEA=EST /CNT=6 /TID=Rn.22057.1 /TIER=ConsEnd /STK=1 /UG=Rn.22057 /UG_TITLE=ESTs AA942745 1392614_at BF283881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283881 /DB_XREF=gi:11214951 /DB_XREF=EST448472 /CLONE=RGIEH64 /FEA=EST /CNT=6 /TID=Rn.12634.1 /TIER=ConsEnd /STK=1 /UG=Rn.12634 /UG_TITLE=ESTs BF283881 family with sequence similarity 126, member B Fam126b 316415 NM_001025710 0005622 // intracellular // not recorded 1392615_at AI454224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454224 /DB_XREF=gi:4292230 /DB_XREF=UI-R-E0-cd-a-03-0-UI.s1 /CLONE=UI-R-E0-cd-a-03-0-UI /FEA=EST /CNT=5 /TID=Rn.64052.1 /TIER=ConsEnd /STK=1 /UG=Rn.64052 /UG_TITLE=ESTs AI454224 selenoprotein I Seli 362713 NM_001134754 0008654 // phospholipid biosynthetic process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016780 // phosphotransferase activity, for other substituted phosphate groups // inferred from electronic annotation 1392616_at AI575519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575519 /DB_XREF=gi:4559895 /DB_XREF=UI-R-Y0-ve-h-04-0-UI.s1 /CLONE=UI-R-Y0-ve-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.40566.1 /TIER=ConsEnd /STK=1 /UG=Rn.40566 /UG_TITLE=ESTs AI575519 1392617_at BI289715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289715 /DB_XREF=gi:14947580 /DB_XREF=UI-R-DK0-cfn-d-01-0-UI.s1 /CLONE=UI-R-DK0-cfn-d-01-0-UI /FEA=EST /CNT=5 /TID=Rn.64902.1 /TIER=ConsEnd /STK=1 /UG=Rn.64902 /UG_TITLE=ESTs BI289715 similar to hypothetical protein DKFZp761D0211 RGD1306151 362455 NM_001108652 1392618_at BG379597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379597 /DB_XREF=gi:13304069 /DB_XREF=UI-R-CS0-bti-h-02-0-UI.s1 /CLONE=UI-R-CS0-bti-h-02-0-UI /FEA=EST /CNT=5 /TID=Rn.27192.1 /TIER=ConsEnd /STK=1 /UG=Rn.27192 /UG_TITLE=ESTs BG379597 1392619_at BE118107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118107 /DB_XREF=gi:8510212 /DB_XREF=UI-R-BS1-azn-g-03-0-UI.s1 /CLONE=UI-R-BS1-azn-g-03-0-UI /FEA=EST /CNT=5 /TID=Rn.22011.1 /TIER=ConsEnd /STK=1 /UG=Rn.22011 /UG_TITLE=ESTs BE118107 1392620_at AI502369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502369 /DB_XREF=gi:4400220 /DB_XREF=UI-R-C0-jf-h-04-0-UI.s1 /CLONE=UI-R-C0-jf-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.11922.1 /TIER=ConsEnd /STK=1 /UG=Rn.11922 /UG_TITLE=ESTs AI502369 1392621_at AI231159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231159 /DB_XREF=gi:3815039 /DB_XREF=EST227847 /CLONE=REMDG50 /FEA=EST /CNT=5 /TID=Rn.24902.1 /TIER=ConsEnd /STK=1 /UG=Rn.24902 /UG_TITLE=ESTs, Weakly similar to K07A12.1.p (Caenorhabditis elegans) (C.elegans) AI231159 transcription factor 25 (basic helix-loop-helix) Tcf25 292082 XM_001079503 /// XM_214707 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392622_at AI145454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145454 /DB_XREF=gi:3667253 /DB_XREF=UI-R-BT0-pv-f-07-0-UI.s1 /CLONE=UI-R-BT0-pv-f-07-0-UI /FEA=EST /CNT=5 /TID=Rn.23995.1 /TIER=ConsEnd /STK=1 /UG=Rn.23995 /UG_TITLE=ESTs AI145454 spermatogenesis associated 2-like Spata2L 498963 NM_001109133 1392623_at AA926097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926097 /DB_XREF=gi:4237288 /DB_XREF=UI-R-A1-eu-c-08-0-UI.s1 /CLONE=UI-R-A1-eu-c-08-0-UI /FEA=EST /CNT=5 /TID=Rn.15656.1 /TIER=ConsEnd /STK=1 /UG=Rn.15656 /UG_TITLE=ESTs AA926097 1392624_at BF396328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396328 /DB_XREF=gi:11381300 /DB_XREF=UI-R-BS2-bdw-h-04-0-UI.s1 /CLONE=UI-R-BS2-bdw-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.23924.1 /TIER=ConsEnd /STK=1 /UG=Rn.23924 /UG_TITLE=ESTs BF396328 1392625_at AI578406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578406 /DB_XREF=gi:4562782 /DB_XREF=UI-R-C3-su-d-12-0-UI.s2 /CLONE=UI-R-C3-su-d-12-0-UI /FEA=EST /CNT=5 /TID=Rn.24563.1 /TIER=ConsEnd /STK=1 /UG=Rn.24563 /UG_TITLE=ESTs AI578406 1392626_at BE110801 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110801 /DB_XREF=gi:8502906 /DB_XREF=UI-R-BJ1-aus-b-06-0-UI.s1 /CLONE=UI-R-BJ1-aus-b-06-0-UI /FEA=EST /CNT=5 /TID=Rn.33501.1 /TIER=ConsEnd /STK=1 /UG=Rn.33501 /UG_TITLE=ESTs BE110801 protein kinase, membrane associated tyrosine/threonine 1 Pkmyt1 287101 NM_001105766 0006468 // protein phosphorylation // inferred from electronic annotation 0005654 // nucleoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded 1392627_x_at BI282114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282114 /DB_XREF=gi:14932537 /DB_XREF=UI-R-CU0s-cbw-f-12-0-UI.s1 /CLONE=UI-R-CU0s-cbw-f-12-0-UI /FEA=EST /CNT=4 /TID=Rn.67547.1 /TIER=ConsEnd /STK=1 /UG=Rn.67547 /UG_TITLE=ESTs, Weakly similar to POL3 MOUSE RETROVIRUS-RELATED POL POLYPROTEIN (M.musculus) BI282114 1392628_at AI012134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012134 /DB_XREF=gi:3225966 /DB_XREF=EST206585 /CLONE=RPLAT19 /FEA=EST /CNT=4 /TID=Rn.82246.1 /TIER=ConsEnd /STK=1 /UG=Rn.82246 /UG_TITLE=ESTs AI012134 1392629_a_at BF386158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386158 /DB_XREF=gi:11370982 /DB_XREF=UI-R-CA1-bba-f-07-0-UI.s1 /CLONE=UI-R-CA1-bba-f-07-0-UI /FEA=EST /CNT=1 /TID=Rn.56195.2 /TIER=ConsEnd /STK=1 /UG=Rn.56195 /UG_TITLE=ESTs, Weakly similar to CIRP MOUSE COLD-INDUCIBLE RNA-BINDING PROTEIN (R.norvegicus) BF386158 zinc finger CCHC-type and RNA binding motif 1 Zcrb1 362990 NM_001034940 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005689 // U12-type spliceosomal complex // inferred from electronic annotation /// 0005689 // U12-type spliceosomal complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392630_at AI060221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060221 /DB_XREF=gi:3333998 /DB_XREF=UI-R-C1-lm-e-05-0-UI.s1 /CLONE=UI-R-C1-lm-e-05-0-UI /FEA=EST /CNT=4 /TID=Rn.19395.1 /TIER=ConsEnd /STK=1 /UG=Rn.19395 /UG_TITLE=ESTs AI060221 1392631_at AA900254 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900254 /DB_XREF=gi:4232745 /DB_XREF=UI-R-E0-de-f-07-0-UI.s2 /CLONE=UI-R-E0-de-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.22933.2 /TIER=ConsEnd /STK=1 /UG=Rn.22933 /UG_TITLE=ESTs AA900254 Sp1 transcription factor Sp1 24790 NM_012655 0001503 // ossification // inferred from electronic annotation /// 0001503 // ossification // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001829 // trophectodermal cell differentiation // inferred from electronic annotation /// 0001829 // trophectodermal cell differentiation // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0001892 // embryonic placenta development // inferred from electronic annotation /// 0001892 // embryonic placenta development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0030219 // megakaryocyte differentiation // inferred from electronic annotation /// 0030219 // megakaryocyte differentiation // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0043353 // enucleate erythrocyte differentiation // inferred from electronic annotation /// 0043353 // enucleate erythrocyte differentiation // not recorded /// 0043923 // positive regulation by host of viral transcription // inferred from electronic annotation /// 0043923 // positive regulation by host of viral transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045817 // positive regulation of transcription from RNA polymerase II promoter, global // inferred from electronic annotation /// 0045817 // positive regulation of transcription from RNA polymerase II promoter, global // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048596 // embryonic camera-type eye morphogenesis // inferred from electronic annotation /// 0048596 // embryonic camera-type eye morphogenesis // not recorded /// 0048706 // embryonic skeletal system development // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // not recorded /// 0060136 // embryonic process involved in female pregnancy // inferred from electronic annotation /// 0060136 // embryonic process involved in female pregnancy // not recorded /// 0060216 // definitive hemopoiesis // inferred from electronic annotation /// 0060216 // definitive hemopoiesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0032993 // protein-DNA complex // inferred from direct assay 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // not recorded /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0035035 // histone acetyltransferase binding // inferred from physical interaction /// 0035326 // enhancer binding // inferred from electronic annotation /// 0035326 // enhancer binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392632_at AI044816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044816 /DB_XREF=gi:3291635 /DB_XREF=UI-R-C1-ki-d-01-0-UI.s1 /CLONE=UI-R-C1-ki-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.16028.1 /TIER=ConsEnd /STK=1 /UG=Rn.16028 /UG_TITLE=ESTs AI044816 tetratricopeptide repeat domain 9 Ttc9 500689 NM_001134731 0006457 // protein folding // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1392633_at AI045724 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045724 /DB_XREF=gi:3292543 /DB_XREF=UI-R-C1-jy-d-10-0-UI.s2 /CLONE=UI-R-C1-jy-d-10-0-UI /FEA=EST /CNT=4 /TID=Rn.33382.1 /TIER=ConsEnd /STK=1 /UG=Rn.33382 /UG_TITLE=ESTs AI045724 1392634_at AW522386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522386 /DB_XREF=gi:7164771 /DB_XREF=UI-R-BO0-ahw-d-12-0-UI.s1 /CLONE=UI-R-BO0-ahw-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.45378.1 /TIER=ConsEnd /STK=1 /UG=Rn.45378 /UG_TITLE=ESTs AW522386 1392635_at BM387415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387415 /DB_XREF=gi:18187468 /DB_XREF=UI-R-CN1-cjj-o-17-0-UI.s1 /CLONE=UI-R-CN1-cjj-o-17-0-UI /FEA=EST /CNT=4 /TID=Rn.48514.1 /TIER=ConsEnd /STK=1 /UG=Rn.48514 /UG_TITLE=ESTs BM387415 1392636_at AA964319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964319 /DB_XREF=gi:4279194 /DB_XREF=UI-R-C0-gu-e-08-0-UI.s1 /CLONE=UI-R-C0-gu-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.12098.1 /TIER=ConsEnd /STK=1 /UG=Rn.12098 /UG_TITLE=ESTs AA964319 1392637_at AA923988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA923988 /DB_XREF=gi:4234080 /DB_XREF=UI-R-A1-dq-g-01-0-UI.s1 /CLONE=UI-R-A1-dq-g-01-0-UI /FEA=EST /CNT=4 /TID=Rn.2746.1 /TIER=ConsEnd /STK=1 /UG=Rn.2746 /UG_TITLE=ESTs AA923988 1392638_at AI599308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599308 /DB_XREF=gi:4608356 /DB_XREF=EST251011 /CLONE=REMEP69 /FEA=EST /CNT=4 /TID=Rn.40579.1 /TIER=ConsEnd /STK=1 /UG=Rn.40579 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) AI599308 1392639_at AI177281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177281 /DB_XREF=gi:4134970 /DB_XREF=EST220896 /CLONE=ROVCF21 /FEA=EST /CNT=4 /TID=Rn.56457.1 /TIER=ConsEnd /STK=1 /UG=Rn.56457 /UG_TITLE=ESTs AI177281 1392640_at AI412155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412155 /DB_XREF=gi:4255659 /DB_XREF=EST240449 /CLONE=RKIEG89 /FEA=EST /CNT=4 /TID=Rn.43646.1 /TIER=ConsEnd /STK=1 /UG=Rn.43646 /UG_TITLE=ESTs AI412155 cryptochrome 1 (photolyase-like) Cry1 299691 NM_198750 0006281 // DNA repair // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0007623 // circadian rhythm // not recorded /// 0018298 // protein-chromophore linkage // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048511 // rhythmic process // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003913 // DNA photolyase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0009881 // photoreceptor activity // inferred from electronic annotation 1392641_at AA957091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957091 /DB_XREF=gi:4239564 /DB_XREF=UI-R-E1-fs-b-05-0-UI.s1 /CLONE=UI-R-E1-fs-b-05-0-UI /FEA=EST /CNT=4 /TID=Rn.19752.2 /TIER=ConsEnd /STK=1 /UG=Rn.19752 /UG_TITLE=ESTs AA957091 Hypothetical protein LOC691543 LOC691543 691543 NM_001109645 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 1392642_at AI101514 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101514 /DB_XREF=gi:3706404 /DB_XREF=EST210803 /CLONE=RBRBR53 /FEA=EST /CNT=4 /TID=Rn.23891.1 /TIER=ConsEnd /STK=1 /UG=Rn.23891 /UG_TITLE=ESTs AI101514 Sumo1/sentrin/SMT3 specific peptidase 3 Senp3 303245 NM_001013116 0006508 // proteolysis // inferred from electronic annotation /// 0019538 // protein metabolic process // not recorded /// 0019538 // protein metabolic process // inferred from electronic annotation 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0071339 // MLL1 complex // not recorded /// 0071339 // MLL1 complex // inferred from electronic annotation 0004843 // ubiquitin-specific protease activity // not recorded /// 0004843 // ubiquitin-specific protease activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation 1392643_at BF407212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407212 /DB_XREF=gi:11395187 /DB_XREF=UI-R-BJ2-bqw-h-12-0-UI.s1 /CLONE=UI-R-BJ2-bqw-h-12-0-UI /FEA=EST /CNT=4 /TID=Rn.41206.1 /TIER=ConsEnd /STK=1 /UG=Rn.41206 /UG_TITLE=ESTs, Weakly similar to RB1A RAT RAS-RELATED PROTEIN RAB-1A (R.norvegicus) BF407212 RAB5B, member RAS oncogene family Rab5b 288779 NM_001079936 0007032 // endosome organization // not recorded /// 0007032 // endosome organization // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0030100 // regulation of endocytosis // not recorded /// 0030100 // regulation of endocytosis // inferred from electronic annotation 0005622 // intracellular // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0030139 // endocytic vesicle // not recorded /// 0030139 // endocytic vesicle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0030742 // GTP-dependent protein binding // not recorded /// 0030742 // GTP-dependent protein binding // inferred from electronic annotation 1392644_s_at AA964146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964146 /DB_XREF=gi:4279022 /DB_XREF=UI-R-E1-gl-f-08-0-UI.s1 /CLONE=UI-R-E1-gl-f-08-0-UI /FEA=EST /CNT=4 /TID=Rn.65538.1 /TIER=ConsEnd /STK=1 /UG=Rn.65538 /UG_TITLE=ESTs AA964146 similar to RIKEN cDNA 2610019F03 LOC498662 498662 NM_001100791 1392645_at AA998765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998765 /DB_XREF=gi:4292120 /DB_XREF=UI-R-C0-im-a-10-0-UI.s1 /CLONE=UI-R-C0-im-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.51120.1 /TIER=ConsEnd /STK=1 /UG=Rn.51120 /UG_TITLE=ESTs AA998765 1392646_at BE107837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107837 /DB_XREF=gi:8499942 /DB_XREF=UI-R-CA0-awx-d-10-0-UI.s1 /CLONE=UI-R-CA0-awx-d-10-0-UI /FEA=EST /CNT=4 /TID=Rn.23908.1 /TIER=ConsEnd /STK=1 /UG=Rn.23908 /UG_TITLE=ESTs BE107837 anoctamin 4 Ano4 299714 NM_001106778 1392647_at BF282318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282318 /DB_XREF=gi:11213489 /DB_XREF=EST447010 /CLONE=RGIDN18 /FEA=EST /CNT=4 /TID=Rn.12643.1 /TIER=ConsEnd /STK=1 /UG=Rn.12643 /UG_TITLE=ESTs, Moderately similar to SERUM AMYLOID A-3 PROTEIN PRECURSOR (M.musculus) BF282318 Similar to Serum amyloid A-3 protein precursor LOC691143 691143 0006953 // acute-phase response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 1392648_at BI294018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294018 /DB_XREF=gi:14956072 /DB_XREF=UI-R-DK0-cdy-d-02-0-UI.s1 /CLONE=UI-R-DK0-cdy-d-02-0-UI /FEA=EST /CNT=4 /TID=Rn.9197.1 /TIER=ConsEnd /STK=1 /UG=Rn.9197 /UG_TITLE=ESTs BI294018 mannose receptor, C type 1 Mrc1 291327 NM_001106123 0007165 // signal transduction // not recorded 0009986 // cell surface // not recorded 0004888 // transmembrane receptor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0005537 // mannose binding // not recorded 1392649_at AI030616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030616 /DB_XREF=gi:3248442 /DB_XREF=UI-R-C0-jh-d-10-0-UI.s1 /CLONE=UI-R-C0-jh-d-10-0-UI /FEA=EST /CNT=4 /TID=Rn.21610.1 /TIER=ConsEnd /STK=1 /UG=Rn.21610 /UG_TITLE=ESTs AI030616 1392650_at AI059349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059349 /DB_XREF=gi:3333126 /DB_XREF=UI-R-C1-lf-h-04-0-UI.s1 /CLONE=UI-R-C1-lf-h-04-0-UI /FEA=EST /CNT=4 /TID=Rn.19521.1 /TIER=ConsEnd /STK=1 /UG=Rn.19521 /UG_TITLE=ESTs, Highly similar to casein kinase II, alpha 1 polypeptide (Rattus norvegicus) (R.norvegicus) AI059349 casein kinase 2, alpha 1 polypeptide Csnk2a1 116549 NM_053824 0001558 // regulation of cell growth // non-traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // non-traceable author statement /// 0046777 // protein autophosphorylation // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005956 // protein kinase CK2 complex // traceable author statement /// 0016580 // Sin3 complex // not recorded /// 0016581 // NuRD complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019888 // protein phosphatase regulator activity // not recorded /// 0047485 // protein N-terminus binding // not recorded 1392651_at AA858611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858611 /DB_XREF=gi:4229943 /DB_XREF=UI-R-E0-bq-a-12-0-UI.s1 /CLONE=UI-R-E0-bq-a-12-0-UI /FEA=EST /CNT=4 /TID=Rn.23914.1 /TIER=ConsEnd /STK=1 /UG=Rn.23914 /UG_TITLE=ESTs AA858611 1392652_at AI060083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060083 /DB_XREF=gi:3333860 /DB_XREF=UI-R-C1-li-b-12-0-UI.s1 /CLONE=UI-R-C1-li-b-12-0-UI /FEA=EST /CNT=4 /TID=Rn.22782.1 /TIER=ConsEnd /STK=1 /UG=Rn.22782 /UG_TITLE=ESTs, Weakly similar to CU4B_HUMAN CULLIN HOMOLOG 4B (H.sapiens) AI060083 1392653_at BE118116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118116 /DB_XREF=gi:8510221 /DB_XREF=UI-R-BS1-azn-h-02-0-UI.s1 /CLONE=UI-R-BS1-azn-h-02-0-UI /FEA=EST /CNT=4 /TID=Rn.11818.1 /TIER=ConsEnd /STK=1 /UG=Rn.11818 /UG_TITLE=ESTs BE118116 1392654_at BF413389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413389 /DB_XREF=gi:11401378 /DB_XREF=UI-R-CA0-boe-e-05-0-UI.s1 /CLONE=UI-R-CA0-boe-e-05-0-UI /FEA=EST /CNT=4 /TID=Rn.35618.1 /TIER=ConsEnd /STK=1 /UG=Rn.35618 /UG_TITLE=ESTs, Weakly similar to translational release factor 1 (H.sapiens) BF413389 mitochondrial translational release factor 1-like Mtrf1l 361473 NM_001025723 0006412 // translation // inferred from electronic annotation /// 0006415 // translational termination // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003747 // translation release factor activity // inferred from electronic annotation /// 0016149 // translation release factor activity, codon specific // inferred from electronic annotation 1392655_at AA997266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997266 /DB_XREF=gi:4282817 /DB_XREF=UI-R-C0-hy-f-01-0-UI.s1 /CLONE=UI-R-C0-hy-f-01-0-UI /FEA=EST /CNT=4 /TID=Rn.12670.1 /TIER=ConsEnd /STK=1 /UG=Rn.12670 /UG_TITLE=ESTs AA997266 1392656_at AI073268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073268 /DB_XREF=gi:3399462 /DB_XREF=UI-R-Y0-mb-e-10-0-UI.s1 /CLONE=UI-R-Y0-mb-e-10-0-UI /FEA=EST /CNT=4 /TID=Rn.19316.1 /TIER=ConsEnd /STK=1 /UG=Rn.19316 /UG_TITLE=ESTs AI073268 1392657_at BF397806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397806 /DB_XREF=gi:11382790 /DB_XREF=UI-R-BS2-bee-h-02-0-UI.s1 /CLONE=UI-R-BS2-bee-h-02-0-UI /FEA=EST /CNT=4 /TID=Rn.23929.1 /TIER=ConsEnd /STK=1 /UG=Rn.23929 /UG_TITLE=ESTs BF397806 1392658_at AI230409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230409 /DB_XREF=gi:3814296 /DB_XREF=EST227104 /CLONE=REMCW20 /FEA=EST /CNT=4 /TID=Rn.23283.1 /TIER=ConsEnd /STK=1 /UG=Rn.23283 /UG_TITLE=ESTs AI230409 Similar to transcription elongation factor A 1 isoform 2 LOC498453 498453 XM_001059576 /// XM_001059640 /// XM_002728177 /// XM_573712 0006354 // RNA elongation // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003711 // transcription elongation regulator activity // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1392659_at AI045496 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045496 /DB_XREF=gi:3292315 /DB_XREF=UI-R-C1-kj-d-10-0-UI.s1 /CLONE=UI-R-C1-kj-d-10-0-UI /FEA=EST /CNT=4 /TID=Rn.20884.1 /TIER=ConsEnd /STK=1 /UG=Rn.20884 /UG_TITLE=ESTs, Weakly similar to Yeast SOH1 protein like (Caenorhabditis elegans) (C.elegans) AI045496 Mediator complex subunit 31 Med31 287475 NM_001135813 0006461 // protein complex assembly // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0016592 // mediator complex // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay 1392660_at BE119130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119130 /DB_XREF=gi:8511235 /DB_XREF=UI-R-CA0-azy-h-01-0-UI.s1 /CLONE=UI-R-CA0-azy-h-01-0-UI /FEA=EST /CNT=4 /TID=Rn.24306.1 /TIER=ConsEnd /STK=1 /UG=Rn.24306 /UG_TITLE=ESTs BE119130 1392661_at AI228227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228227 /DB_XREF=gi:3812114 /DB_XREF=EST224922 /CLONE=RBRCS15 /FEA=EST /CNT=4 /TID=Rn.42481.1 /TIER=ConsEnd /STK=1 /UG=Rn.42481 /UG_TITLE=ESTs AI228227 1392662_at AI229905 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229905 /DB_XREF=gi:3813792 /DB_XREF=EST226600 /CLONE=REMCO17 /FEA=EST /CNT=4 /TID=Rn.22686.1 /TIER=ConsEnd /STK=1 /UG=Rn.22686 /UG_TITLE=ESTs, Weakly similar to T26088 hypothetical protein W02B12.7 - Caenorhabditis elegans (C.elegans) AI229905 CDGSH iron sulfur domain 2 Cisd2 295457 NM_001191608 /// XM_001077768 /// XM_215704 0000422 // mitochondrion degradation // not recorded /// 0010259 // multicellular organismal aging // not recorded /// 0010506 // regulation of autophagy // not recorded 0005741 // mitochondrial outer membrane // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // not recorded 1392663_at AI179925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179925 /DB_XREF=gi:3730563 /DB_XREF=EST223656 /CLONE=RSPCN78 /FEA=EST /CNT=4 /TID=Rn.24232.1 /TIER=ConsEnd /STK=1 /UG=Rn.24232 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) AI179925 similar to hypothetical protein FLJ13188 RGD1305500 308004 NM_001107448 1392664_at BF551274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551274 /DB_XREF=gi:11661004 /DB_XREF=UI-R-C0-hq-a-09-0-UI.r1 /CLONE=UI-R-C0-hq-a-09-0-UI /FEA=EST /CNT=4 /TID=Rn.12621.1 /TIER=ConsEnd /STK=1 /UG=Rn.12621 /UG_TITLE=ESTs, Highly similar to ADMR_RAT ADRENOMEDULLIN RECEPTOR (AM-R) (G10D) (NOW) (R.norvegicus) BF551274 G protein-coupled receptor 182 Gpr182 29307 NM_053302 0001666 // response to hypoxia // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001605 // adrenomedullin receptor activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1392665_at BF285589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285589 /DB_XREF=gi:11216659 /DB_XREF=EST450180 /CLONE=RGIFH62 /FEA=EST /CNT=4 /TID=Rn.55312.1 /TIER=ConsEnd /STK=1 /UG=Rn.55312 /UG_TITLE=ESTs, Highly similar to RLA2 RAT 60S ACIDIC RIBOSOMAL PROTEIN P2 (R.norvegicus) BF285589 exosome component 3 Exosc3 313243 NM_001107936 0006364 // rRNA processing // not recorded 0000176 // nuclear exosome (RNase complex) // not recorded /// 0000177 // cytoplasmic exosome (RNase complex) // not recorded 0005515 // protein binding // not recorded 1392666_at BF554555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554555 /DB_XREF=gi:11664285 /DB_XREF=UI-R-C0-it-a-01-0-UI.r1 /CLONE=UI-R-C0-it-a-01-0-UI /FEA=EST /CNT=4 /TID=Rn.18442.1 /TIER=ConsEnd /STK=1 /UG=Rn.18442 /UG_TITLE=ESTs BF554555 1392667_at AI070793 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070793 /DB_XREF=gi:3397044 /DB_XREF=UI-R-C2-mr-e-07-0-UI.s1 /CLONE=UI-R-C2-mr-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.19850.1 /TIER=ConsEnd /STK=1 /UG=Rn.19850 /UG_TITLE=ESTs, Weakly similar to A55197 Wiskott-Aldrich syndrome protein WASP (H.sapiens) AI070793 1392668_at AI235429 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235429 /DB_XREF=gi:3828935 /DB_XREF=EST231991 /CLONE=ROVCR70 /FEA=EST /CNT=6 /TID=Rn.24975.2 /TIER=ConsEnd /STK=1 /UG=Rn.24975 /UG_TITLE=ESTs AI235429 recombination signal binding protein for immunoglobulin kappa J region Rbpj 679028 NM_001106631 0001525 // angiogenesis // not recorded /// 0001837 // epithelial to mesenchymal transition // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0007219 // Notch signaling pathway // not recorded /// 0007507 // heart development // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009957 // epidermal cell fate specification // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0010977 // negative regulation of neuron projection development // inferred from mutant phenotype /// 0014912 // negative regulation of smooth muscle cell migration // inferred from mutant phenotype /// 0021983 // pituitary gland development // not recorded /// 0030097 // hemopoiesis // not recorded /// 0030182 // neuron differentiation // not recorded /// 0030183 // B cell differentiation // not recorded /// 0030216 // keratinocyte differentiation // not recorded /// 0034392 // negative regulation of smooth muscle cell apoptosis // inferred from mutant phenotype /// 0042742 // defense response to bacterium // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045941 // positive regulation of transcription // inferred from mutant phenotype /// 0048505 // regulation of timing of cell differentiation // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0048733 // sebaceous gland development // not recorded /// 0048820 // hair follicle maturation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0032993 // protein-DNA complex // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0030528 // transcription regulator activity // not recorded /// 0032403 // protein complex binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0047485 // protein N-terminus binding // not recorded 1392669_at BE117193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117193 /DB_XREF=gi:8509298 /DB_XREF=UI-R-BS1-aym-h-09-0-UI.s1 /CLONE=UI-R-BS1-aym-h-09-0-UI /FEA=EST /CNT=5 /TID=Rn.37775.1 /TIER=ConsEnd /STK=1 /UG=Rn.37775 /UG_TITLE=ESTs BE117193 similar to CG10084-PA RGD1308297 306137 XR_005470 /// XR_009612 1392670_at BF291168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291168 /DB_XREF=gi:11222238 /DB_XREF=EST455759 /CLONE=RGIIJ60 /FEA=EST /CNT=5 /TID=Rn.43145.1 /TIER=ConsEnd /STK=1 /UG=Rn.43145 /UG_TITLE=ESTs BF291168 WW and C2 domain containing 2 Wwc2 498630 NM_001109111 0005515 // protein binding // inferred from electronic annotation 1392671_at AA999074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA999074 /DB_XREF=gi:4293837 /DB_XREF=UI-R-C0-in-a-06-0-UI.s1 /CLONE=UI-R-C0-in-a-06-0-UI /FEA=EST /CNT=5 /TID=Rn.22328.3 /TIER=ConsEnd /STK=1 /UG=Rn.22328 /UG_TITLE=ESTs, Weakly similar to T21672 hypothetical protein F32H2.4 - Caenorhabditis elegans (C.elegans) AA999074 THO complex 3 Thoc3 290519 NM_001106059 0006406 // mRNA export from nucleus // not recorded /// 0046784 // intronless viral mRNA export from host nucleus // not recorded 0000346 // transcription export complex // not recorded 1392672_at AI576758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576758 /DB_XREF=gi:4561134 /DB_XREF=UI-R-Y0-vl-d-01-0-UI.s1 /CLONE=UI-R-Y0-vl-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.38457.1 /TIER=ConsEnd /STK=1 /UG=Rn.38457 /UG_TITLE=ESTs AI576758 C-type lectin domain family 11, member a Clec11a 29313 NM_001012459 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // non-traceable author statement /// 0005529 // sugar binding // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0008083 // growth factor activity // inferred from sequence or structural similarity /// 0008083 // growth factor activity // inferred from electronic annotation 1392673_at BF552510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552510 /DB_XREF=gi:11662240 /DB_XREF=UI-R-C1-kn-h-04-0-UI.r1 /CLONE=UI-R-C1-kn-h-04-0-UI /FEA=EST /CNT=4 /TID=Rn.37658.1 /TIER=ConsEnd /STK=1 /UG=Rn.37658 /UG_TITLE=ESTs, Weakly similar to G02313 CDC37 homolog (H.sapiens) BF552510 cell division cycle 37 homolog (S. cerevisiae)-like 1 Cdc37l1 293886 NM_001011941 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1392674_at AI013937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013937 /DB_XREF=gi:3227993 /DB_XREF=EST208612 /CLONE=RSPBZ72 /FEA=EST /CNT=4 /TID=Rn.40566.2 /TIER=ConsEnd /STK=1 /UG=Rn.40566 /UG_TITLE=ESTs AI013937 1392675_at AI044784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044784 /DB_XREF=gi:3290847 /DB_XREF=UI-R-C1-jt-c-04-0-UI.s1 /CLONE=UI-R-C1-jt-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.20746.1 /TIER=ConsEnd /STK=1 /UG=Rn.20746 /UG_TITLE=ESTs AI044784 1392676_at AI548984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548984 /DB_XREF=gi:4466472 /DB_XREF=UI-R-C3-tv-b-03-0-UI.s1 /CLONE=UI-R-C3-tv-b-03-0-UI /FEA=EST /CNT=4 /TID=Rn.43493.1 /TIER=ConsEnd /STK=1 /UG=Rn.43493 /UG_TITLE=ESTs AI548984 zinc finger protein 667 Znf667 308326 NM_001008557 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392677_at AA924705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924705 /DB_XREF=gi:4235896 /DB_XREF=UI-R-A1-ea-d-03-0-UI.s1 /CLONE=UI-R-A1-ea-d-03-0-UI /FEA=EST /CNT=4 /TID=Rn.32625.1 /TIER=ConsEnd /STK=1 /UG=Rn.32625 /UG_TITLE=ESTs AA924705 Zic family member 4 Zic4 315882 NM_001108176 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1392678_a_at AA956455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956455 /DB_XREF=gi:4238929 /DB_XREF=UI-R-E1-fm-b-02-0-UI.s1 /CLONE=UI-R-E1-fm-b-02-0-UI /FEA=EST /CNT=1 /TID=Rn.32243.3 /TIER=ConsEnd /STK=0 /UG=Rn.32243 /UG_TITLE=ESTs AA956455 DNA (cytosine-5-)-methyltransferase 3 alpha Dnmt3a 444984 NM_001003957 /// NM_001003958 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006306 // DNA methylation // not recorded /// 0006306 // DNA methylation // inferred from sequence or structural similarity /// 0006306 // DNA methylation // inferred from electronic annotation /// 0006346 // methylation-dependent chromatin silencing // inferred from electronic annotation /// 0006346 // methylation-dependent chromatin silencing // not recorded /// 0006349 // regulation of gene expression by genetic imprinting // inferred from electronic annotation /// 0006349 // regulation of gene expression by genetic imprinting // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0010424 // DNA methylation on cytosine within a CG sequence // inferred from direct assay /// 0016568 // chromatin modification // inferred from electronic annotation /// 0043045 // DNA methylation involved in embryo development // inferred from electronic annotation /// 0043045 // DNA methylation involved in embryo development // not recorded /// 0043046 // DNA methylation involved in gamete generation // inferred from electronic annotation /// 0043046 // DNA methylation involved in gamete generation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0046498 // S-adenosylhomocysteine metabolic process // inferred from direct assay /// 0046499 // S-adenosylmethioninamine metabolic process // inferred from direct assay /// 0090116 // C-5 methylation of cytosine // not recorded 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000775 // chromosome, centromeric region // not recorded /// 0000791 // euchromatin // not recorded /// 0000791 // euchromatin // inferred from sequence or structural similarity /// 0000791 // euchromatin // inferred from electronic annotation /// 0000792 // heterochromatin // not recorded /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005720 // nuclear heterochromatin // inferred from electronic annotation /// 0005720 // nuclear heterochromatin // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded /// 0016363 // nuclear matrix // inferred from sequence or structural similarity /// 0016363 // nuclear matrix // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003886 // DNA (cytosine-5-)-methyltransferase activity // not recorded /// 0003886 // DNA (cytosine-5-)-methyltransferase activity // inferred from sequence or structural similarity /// 0003886 // DNA (cytosine-5-)-methyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0045322 // unmethylated CpG binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051718 // DNA (cytosine-5-)-methyltransferase activity, acting on CpG substrates // inferred from direct assay 1392679_at AW525036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525036 /DB_XREF=gi:7167421 /DB_XREF=UI-R-BJ0p-aim-b-04-0-UI.s1 /CLONE=UI-R-BJ0p-aim-b-04-0-UI /FEA=EST /CNT=4 /TID=Rn.23427.1 /TIER=ConsEnd /STK=1 /UG=Rn.23427 /UG_TITLE=ESTs, Weakly similar to TC17 RAT TRANSCRIPTION FACTOR 17 (R.norvegicus) AW525036 zinc finger protein 787 Znf787 365176 NM_001108904 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1392680_at AA900508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900508 /DB_XREF=gi:4233000 /DB_XREF=UI-R-E0-dl-b-10-0-UI.s1 /CLONE=UI-R-E0-dl-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.788.2 /TIER=ConsEnd /STK=1 /UG=Rn.788 /UG_TITLE=ESTs AA900508 1392681_at AW522578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522578 /DB_XREF=gi:7164963 /DB_XREF=UI-R-BO0-ahd-c-12-0-UI.s1 /CLONE=UI-R-BO0-ahd-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.44916.1 /TIER=ConsEnd /STK=1 /UG=Rn.44916 /UG_TITLE=ESTs AW522578 1392682_at AA997263 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997263 /DB_XREF=gi:4282793 /DB_XREF=UI-R-C0-hy-e-04-0-UI.s1 /CLONE=UI-R-C0-hy-e-04-0-UI /FEA=EST /CNT=4 /TID=Rn.12669.1 /TIER=ConsEnd /STK=1 /UG=Rn.12669 /UG_TITLE=ESTs AA997263 1392683_at AW142773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142773 /DB_XREF=gi:6162672 /DB_XREF=EST293026 /CLONE=RGIAV21 /FEA=EST /CNT=4 /TID=Rn.32320.1 /TIER=ConsEnd /STK=1 /UG=Rn.32320 /UG_TITLE=ESTs AW142773 1392684_at BE098511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098511 /DB_XREF=gi:8490375 /DB_XREF=UI-R-BJ1-atc-g-10-0-UI.s1 /CLONE=UI-R-BJ1-atc-g-10-0-UI /FEA=EST /CNT=4 /TID=Rn.50009.1 /TIER=ConsEnd /STK=1 /UG=Rn.50009 /UG_TITLE=ESTs, Highly similar to D3D2 RAT 3,2-TRANS-ENOYL-COA ISOMERASE, MITOCHONDRIAL PRECURSOR (R.norvegicus) BE098511 dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenzyme A isomerase) Dci 29740 NM_017306 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // not recorded /// 0006635 // fatty acid beta-oxidation // traceable author statement /// 0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004165 // dodecenoyl-CoA delta-isomerase activity // inferred from direct assay /// 0004165 // dodecenoyl-CoA delta-isomerase activity // not recorded /// 0004165 // dodecenoyl-CoA delta-isomerase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from direct assay 1392685_at BF415174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415174 /DB_XREF=gi:11403163 /DB_XREF=UI-R-BJ2-bov-g-10-0-UI.s1 /CLONE=UI-R-BJ2-bov-g-10-0-UI /FEA=EST /CNT=4 /TID=Rn.35438.1 /TIER=ConsEnd /STK=1 /UG=Rn.35438 /UG_TITLE=ESTs BF415174 ubiquitin-conjugating enzyme E2C binding protein Ube2cbp 315863 NM_001039610 0005737 // cytoplasm // inferred from electronic annotation 0016874 // ligase activity // inferred from electronic annotation 1392686_at AI072336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072336 /DB_XREF=gi:3398530 /DB_XREF=UI-R-C2-ng-d-10-0-UI.s1 /CLONE=UI-R-C2-ng-d-10-0-UI /FEA=EST /CNT=4 /TID=Rn.20128.1 /TIER=ConsEnd /STK=1 /UG=Rn.20128 /UG_TITLE=ESTs AI072336 naked cuticle homolog 2 (Drosophila) Nkd2 308068 NM_001107454 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0031625 // ubiquitin protein ligase binding // not recorded 1392687_at BF288309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288309 /DB_XREF=gi:11219379 /DB_XREF=EST452900 /CLONE=RGIGS23 /FEA=EST /CNT=4 /TID=Rn.49276.1 /TIER=ConsEnd /STK=1 /UG=Rn.49276 /UG_TITLE=ESTs BF288309 phosphatidylinositol glycan anchor biosynthesis, class Q Pigq 287159 NM_001007607 0006506 // GPI anchor biosynthetic process // inferred from electronic annotation /// 0016254 // preassembly of GPI anchor in ER membrane // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0017176 // phosphatidylinositol N-acetylglucosaminyltransferase activity // inferred from electronic annotation 1392688_at AI113186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113186 /DB_XREF=gi:3513135 /DB_XREF=UI-R-C2p-np-e-07-0-UI.s1 /CLONE=UI-R-C2p-np-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.24153.1 /TIER=ConsEnd /STK=1 /UG=Rn.24153 /UG_TITLE=ESTs AI113186 Ras association (RalGDS/AF-6) domain family member 1 Rassf1 363140 NM_001007754 /// NM_001037555 0006974 // response to DNA damage stimulus // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded /// 0007265 // Ras protein signal transduction // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0050821 // protein stabilization // not recorded /// 0071157 // negative regulation of cell cycle arrest // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1392689_at AI105029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105029 /DB_XREF=gi:3709222 /DB_XREF=EST214318 /CLONE=RHECM70 /FEA=EST /CNT=4 /TID=Rn.8716.1 /TIER=ConsEnd /STK=1 /UG=Rn.8716 /UG_TITLE=ESTs, Weakly similar to LOX5 RAT ARACHIDONATE 5-LIPOXYGENASE (R.norvegicus) AI105029 arachidonate lipoxygenase 3 Aloxe3 287424 NM_001105793 0006691 // leukotriene metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0016165 // lipoxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392690_at AI136957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136957 /DB_XREF=gi:3637734 /DB_XREF=UI-R-C2p-nz-c-07-0-UI.s1 /CLONE=UI-R-C2p-nz-c-07-0-UI /FEA=EST /CNT=4 /TID=Rn.23739.1 /TIER=ConsEnd /STK=1 /UG=Rn.23739 /UG_TITLE=ESTs AI136957 1392691_at AI599130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599130 /DB_XREF=gi:4608178 /DB_XREF=EST250833 /CLONE=REMEB27 /FEA=EST /CNT=3 /TID=Rn.22440.1 /TIER=ConsEnd /STK=1 /UG=Rn.22440 /UG_TITLE=ESTs, Weakly similar to LIPB_YEAST PROBABLE LIPOATE-PROTEIN LIGASE B, MITOCHONDRIAL PRECURSOR (LIPOATE BIOSYNTHESIS PROTEIN B) (S.cerevisiae) AI599130 Lipoyl(octanoyl) transferase 2 (putative) Lipt2 365314 NM_001108917 0006464 // protein modification process // inferred from electronic annotation /// 0009107 // lipoate biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016415 // octanoyltransferase activity // inferred from electronic annotation 1392692_at BE107050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107050 /DB_XREF=gi:8499155 /DB_XREF=UI-R-BS1-ayp-c-03-0-UI.s1 /CLONE=UI-R-BS1-ayp-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.29198.1 /TIER=ConsEnd /STK=1 /UG=Rn.29198 /UG_TITLE=ESTs BE107050 1392693_at AW530812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530812 /DB_XREF=gi:7173226 /DB_XREF=UI-R-C4-alb-g-04-0-UI.s1 /CLONE=UI-R-C4-alb-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.47550.1 /TIER=ConsEnd /STK=1 /UG=Rn.47550 /UG_TITLE=ESTs AW530812 similar to fatty acid desaturase 2; linoleoyl-CoA desaturase (delta-6-desaturase)-like 2; delta-6 fatty acid desaturase RGD1311224 295714 XM_002726225 /// XM_002729187 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016717 // oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation 1392694_at AW526101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526101 /DB_XREF=gi:7168486 /DB_XREF=UI-R-BO1-aiz-c-03-0-UI.s1 /CLONE=UI-R-BO1-aiz-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.44158.1 /TIER=ConsEnd /STK=1 /UG=Rn.44158 /UG_TITLE=ESTs AW526101 similar to Gm566 protein RGD1562344 295337 NM_001106459 0042981 // regulation of apoptosis // inferred from electronic annotation 1392695_a_at BI284212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284212 /DB_XREF=gi:14936689 /DB_XREF=UI-R-CX0s-ccn-e-08-0-UI.s1 /CLONE=UI-R-CX0s-ccn-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.22945.1 /TIER=ConsEnd /STK=1 /UG=Rn.22945 /UG_TITLE=ESTs, Highly similar to HEM4 MOUSE UROPORPHYRINOGEN-III SYNTHASE (M.musculus) BI284212 uroporphyrinogen III synthase Uros 309070 NM_001012068 0006779 // porphyrin biosynthetic process // not recorded /// 0006779 // porphyrin biosynthetic process // inferred from electronic annotation /// 0006780 // uroporphyrinogen III biosynthetic process // inferred from direct assay /// 0006780 // uroporphyrinogen III biosynthetic process // inferred from electronic annotation /// 0006780 // uroporphyrinogen III biosynthetic process // not recorded /// 0006783 // heme biosynthetic process // not recorded /// 0014075 // response to amine stimulus // inferred from expression pattern /// 0033014 // tetrapyrrole biosynthetic process // inferred from electronic annotation /// 0046677 // response to antibiotic // inferred from expression pattern /// 0046685 // response to arsenic // inferred from expression pattern /// 0071243 // cellular response to arsenic // inferred from expression pattern /// 0071418 // cellular response to amine stimulus // inferred from expression pattern 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay 0004852 // uroporphyrinogen-III synthase activity // inferred from direct assay /// 0004852 // uroporphyrinogen-III synthase activity // not recorded /// 0004852 // uroporphyrinogen-III synthase activity // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from direct assay 1392696_at BF288234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288234 /DB_XREF=gi:11219304 /DB_XREF=EST452825 /CLONE=RGIGR29 /FEA=EST /CNT=3 /TID=Rn.6558.1 /TIER=ConsEnd /STK=1 /UG=Rn.6558 /UG_TITLE=ESTs BF288234 1392697_at AI230361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230361 /DB_XREF=gi:3814248 /DB_XREF=EST227056 /CLONE=REMCV58 /FEA=EST /CNT=3 /TID=Rn.33107.1 /TIER=ConsEnd /STK=1 /UG=Rn.33107 /UG_TITLE=ESTs AI230361 1392698_a_at AA899844 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899844 /DB_XREF=gi:4232337 /DB_XREF=UI-R-E0-cq-g-04-0-UI.s2 /CLONE=UI-R-E0-cq-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.12334.1 /TIER=ConsEnd /STK=1 /UG=Rn.12334 /UG_TITLE=ESTs AA899844 general transcription factor IIIC, polypeptide 4 Gtf3c4 685539 NM_001109473 0000127 // transcription factor TFIIIC complex // not recorded 0005515 // protein binding // not recorded 1392699_at BF411888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411888 /DB_XREF=gi:11399877 /DB_XREF=UI-R-BT1-bmr-e-07-0-UI.s1 /CLONE=UI-R-BT1-bmr-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.17764.1 /TIER=ConsEnd /STK=1 /UG=Rn.17764 /UG_TITLE=ESTs BF411888 zinc finger protein 346 Zfp346 306765 NM_001107338 0006915 // apoptosis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1392700_at AA900604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900604 /DB_XREF=gi:4233096 /DB_XREF=UI-R-E0-by-a-07-0-UI.s4 /CLONE=UI-R-E0-by-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.15438.2 /TIER=ConsEnd /STK=1 /UG=Rn.15438 /UG_TITLE=ESTs AA900604 Geminin Gmnn 291137 NM_001106112 0006461 // protein complex assembly // not recorded /// 0008156 // negative regulation of DNA replication // inferred from electronic annotation /// 0008156 // negative regulation of DNA replication // not recorded /// 0009887 // organ morphogenesis // not recorded /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0045786 // negative regulation of cell cycle // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0042826 // histone deacetylase binding // not recorded /// 0070491 // transcription repressor binding // not recorded 1392701_at BI285572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285572 /DB_XREF=gi:14939364 /DB_XREF=UI-R-CW0s-ccb-g-02-0-UI.s1 /CLONE=UI-R-CW0s-ccb-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.18673.2 /TIER=ConsEnd /STK=1 /UG=Rn.18673 /UG_TITLE=ESTs, Highly similar to AF135421 1 GDP-mannose pyrophosphorylase B (H.sapiens) BI285572 GDP-mannose pyrophosphorylase B Gmppb 363145 NM_001108781 0009058 // biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1392702_at BM387858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387858 /DB_XREF=gi:18187911 /DB_XREF=UI-R-CN1-cjk-f-11-0-UI.s1 /CLONE=UI-R-CN1-cjk-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.43236.3 /TIER=ConsEnd /STK=1 /UG=Rn.43236 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) BM387858 1392703_at AA945957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945957 /DB_XREF=gi:4132653 /DB_XREF=EST201456 /CLONE=RLUAZ44 /FEA=EST /CNT=3 /TID=Rn.7957.1 /TIER=ConsEnd /STK=1 /UG=Rn.7957 /UG_TITLE=ESTs AA945957 T-box 4 Tbx4 303399 NM_001107034 0001525 // angiogenesis // not recorded /// 0002009 // morphogenesis of an epithelium // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030326 // embryonic limb morphogenesis // not recorded /// 0035108 // limb morphogenesis // not recorded /// 0035110 // leg morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048705 // skeletal system morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392704_at AI029221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029221 /DB_XREF=gi:4297062 /DB_XREF=UI-R-C0-ip-g-03-0-UI.s1 /CLONE=UI-R-C0-ip-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.24431.1 /TIER=ConsEnd /STK=1 /UG=Rn.24431 /UG_TITLE=ESTs AI029221 1392705_at AI412070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412070 /DB_XREF=gi:4255574 /DB_XREF=EST240364 /CLONE=RKIEH94 /FEA=EST /CNT=3 /TID=Rn.35242.1 /TIER=ConsEnd /STK=1 /UG=Rn.35242 /UG_TITLE=ESTs, Highly similar to NAH6_HUMAN SODIUMHYDROGEN EXCHANGER 6 (H.sapiens) AI412070 solute carrier family 9 (sodium/hydrogen exchanger), member 6 Slc9a6 302863 XM_001053956 /// XM_217630 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006885 // regulation of pH // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // not recorded /// 0005886 // plasma membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // not recorded /// 0055038 // recycling endosome membrane // not recorded 0015297 // antiporter activity // inferred from electronic annotation /// 0015299 // solute:hydrogen antiporter activity // inferred from electronic annotation /// 0015385 // sodium:hydrogen antiporter activity // inferred from electronic annotation 1392706_at AI548870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548870 /DB_XREF=gi:4466358 /DB_XREF=UI-R-C3-tz-g-03-0-UI.s1 /CLONE=UI-R-C3-tz-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.43886.1 /TIER=ConsEnd /STK=1 /UG=Rn.43886 /UG_TITLE=ESTs AI548870 1392707_at AA946455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946455 /DB_XREF=gi:3106371 /DB_XREF=EST201954 /CLONE=ROVAR34 /FEA=EST /CNT=3 /TID=Rn.32538.1 /TIER=ConsEnd /STK=1 /UG=Rn.32538 /UG_TITLE=ESTs AA946455 1392708_at AI175745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175745 /DB_XREF=gi:3726383 /DB_XREF=EST219312 /CLONE=ROVBE70 /FEA=EST /CNT=3 /TID=Rn.28930.1 /TIER=ConsEnd /STK=1 /UG=Rn.28930 /UG_TITLE=ESTs, Weakly similar to ML64 MOUSE MLN 64 PROTEIN (M.musculus) AI175745 StAR-related lipid transfer (START) domain containing 6 Stard6 291527 NM_001007627 0006694 // steroid biosynthetic process // inferred from electronic annotation 0015485 // cholesterol binding // inferred from electronic annotation /// 0017127 // cholesterol transporter activity // inferred from electronic annotation 1392709_at BF286936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF286936 /DB_XREF=gi:11218006 /DB_XREF=EST451527 /CLONE=RGIFU68 /FEA=EST /CNT=3 /TID=Rn.13812.1 /TIER=ConsEnd /STK=1 /UG=Rn.13812 /UG_TITLE=ESTs BF286936 1392710_at AI101727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101727 /DB_XREF=gi:3706590 /DB_XREF=EST211016 /CLONE=RBRBU33 /FEA=EST /CNT=3 /TID=Rn.31294.2 /TIER=ConsEnd /STK=1 /UG=Rn.31294 /UG_TITLE=ESTs AI101727 1392711_at AA996440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996440 /DB_XREF=gi:4280207 /DB_XREF=UI-R-C0-he-h-11-0-UI.s1 /CLONE=UI-R-C0-he-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.12278.1 /TIER=ConsEnd /STK=1 /UG=Rn.12278 /UG_TITLE=ESTs AA996440 1392712_at AI044209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044209 /DB_XREF=gi:3291112 /DB_XREF=UI-R-C1-kb-a-07-0-UI.s2 /CLONE=UI-R-C1-kb-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.15834.1 /TIER=ConsEnd /STK=1 /UG=Rn.15834 /UG_TITLE=ESTs AI044209 1392713_a_at AA892541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892541 /DB_XREF=gi:3019420 /DB_XREF=EST196344 /CLONE=RKIAS65 /FEA=EST /CNT=3 /TID=Rn.22980.1 /TIER=ConsEnd /STK=1 /UG=Rn.22980 /UG_TITLE=ESTs AA892541 1392714_at BM389831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389831 /DB_XREF=gi:18189884 /DB_XREF=UI-R-CN1-cjp-l-15-0-UI.s1 /CLONE=UI-R-CN1-cjp-l-15-0-UI /FEA=EST /CNT=3 /TID=Rn.77422.1 /TIER=ConsEnd /STK=1 /UG=Rn.77422 /UG_TITLE=ESTs, Weakly similar to SI21 RAT SERINE PROTEASE INHIBITOR 2.1 (R.norvegicus) BM389831 serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11 Serpinb11 304689 NM_001107167 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation 1392715_at BE113289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113289 /DB_XREF=gi:8505434 /DB_XREF=UI-R-BJ1-awe-b-04-0-UI.s1 /CLONE=UI-R-BJ1-awe-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.65469.1 /TIER=ConsEnd /STK=1 /UG=Rn.65469 /UG_TITLE=ESTs, Weakly similar to JC7355 peroxisome proliferator-activated receptor gamma coactivator-1 - rat (R.norvegicus) BE113289 peroxisome proliferator-activated receptor gamma, coactivator 1 beta Ppargc1b 291567 NM_176075 0006350 // transcription // inferred from electronic annotation /// 0030520 // estrogen receptor signaling pathway // not recorded /// 0030520 // estrogen receptor signaling pathway // inferred from sequence or structural similarity /// 0030520 // estrogen receptor signaling pathway // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051591 // response to cAMP // inferred from expression pattern 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0016592 // mediator complex // inferred from electronic annotation /// 0016592 // mediator complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation /// 0016455 // RNA polymerase II transcription mediator activity // not recorded /// 0030331 // estrogen receptor binding // inferred from electronic annotation /// 0030331 // estrogen receptor binding // not recorded /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from sequence or structural similarity /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from electronic annotation /// 0030546 // receptor activator activity // inferred from electronic annotation /// 0030546 // receptor activator activity // not recorded /// 0050682 // AF-2 domain binding // not recorded /// 0050682 // AF-2 domain binding // inferred from sequence or structural similarity /// 0050682 // AF-2 domain binding // inferred from electronic annotation 1392716_at BF282115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282115 /DB_XREF=gi:11213185 /DB_XREF=EST446706 /CLONE=RGIDC20 /FEA=EST /CNT=3 /TID=Rn.38269.1 /TIER=ConsEnd /STK=1 /UG=Rn.38269 /UG_TITLE=ESTs BF282115 1392717_at BE109171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109171 /DB_XREF=gi:8501276 /DB_XREF=UI-R-BS1-azb-g-03-0-UI.s1 /CLONE=UI-R-BS1-azb-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.33409.2 /TIER=ConsEnd /STK=1 /UG=Rn.33409 /UG_TITLE=ESTs BE109171 1392718_at AA866357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866357 /DB_XREF=gi:4229549 /DB_XREF=UI-R-A0-bm-b-06-0-UI.s1 /CLONE=UI-R-A0-bm-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.3076.1 /TIER=ConsEnd /STK=1 /UG=Rn.3076 /UG_TITLE=ESTs AA866357 similar to Hypothetical protein KIAA0233 RGD1306866 307380 XM_225880 1392719_at AA957588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957588 /DB_XREF=gi:4277478 /DB_XREF=UI-R-E1-gb-a-09-0-UI.s1 /CLONE=UI-R-E1-gb-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.2215.1 /TIER=ConsEnd /STK=1 /UG=Rn.2215 /UG_TITLE=ESTs AA957588 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) Mthfs 300886 NM_001009349 0006915 // apoptosis // inferred by curator /// 0006916 // anti-apoptosis // non-traceable author statement /// 0009396 // folic acid and derivative biosynthetic process // inferred from electronic annotation /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0046653 // tetrahydrofolate metabolic process // not recorded 0005739 // mitochondrion // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // not recorded 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030272 // 5-formyltetrahydrofolate cyclo-ligase activity // inferred from electronic annotation /// 0030272 // 5-formyltetrahydrofolate cyclo-ligase activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0051400 // BH domain binding // inferred from physical interaction 1392720_at BG376949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376949 /DB_XREF=gi:13301421 /DB_XREF=UI-R-CU0-bvl-d-06-0-UI.s1 /CLONE=UI-R-CU0-bvl-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.43212.1 /TIER=ConsEnd /STK=1 /UG=Rn.43212 /UG_TITLE=ESTs, Moderately similar to CYTOCHROME P450 4F6 (R.norvegicus) BG376949 cytochrome P450, family 4, subfamily f, polypeptide 17 Cyp4f17 500801 NM_001191986 /// XM_002726858 /// XM_002729769 /// XM_576190 0004497 // monooxygenase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392721_at AI113185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113185 /DB_XREF=gi:3513134 /DB_XREF=UI-R-C2p-np-e-06-0-UI.s1 /CLONE=UI-R-C2p-np-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.23640.1 /TIER=ConsEnd /STK=1 /UG=Rn.23640 /UG_TITLE=ESTs AI113185 1392722_at AA819134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819134 /DB_XREF=gi:4227796 /DB_XREF=UI-R-A0-ba-c-01-0-UI.s1 /CLONE=UI-R-A0-ba-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.16615.1 /TIER=ConsEnd /STK=1 /UG=Rn.16615 /UG_TITLE=ESTs AA819134 dual adaptor of phosphotyrosine and 3-phosphoinositides Dapp1 362046 NM_001108568 0005886 // plasma membrane // not recorded /// 0005942 // phosphoinositide 3-kinase complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // not recorded /// 0035014 // phosphoinositide 3-kinase regulator activity // inferred from electronic annotation /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // not recorded 1392723_at BF388065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388065 /DB_XREF=gi:11372889 /DB_XREF=UI-R-CA1-bbx-h-04-0-UI.s1 /CLONE=UI-R-CA1-bbx-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.22966.1 /TIER=ConsEnd /STK=1 /UG=Rn.22966 /UG_TITLE=ESTs BF388065 1392724_at AI705674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI705674 /DB_XREF=gi:4993574 /DB_XREF=UI-R-AD1-zp-e-12-0-UI.s1 /CLONE=UI-R-AD1-zp-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.67218.1 /TIER=ConsEnd /STK=1 /UG=Rn.67218 /UG_TITLE=ESTs, Weakly similar to JC4917 signal transducing adaptor - mouse (M.musculus) AI705674 target of myb1-like 2 (chicken) Tom1l2 360537 NM_001108277 0006886 // intracellular protein transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 1392725_at AA924588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924588 /DB_XREF=gi:4235779 /DB_XREF=UI-R-A1-ea-e-12-0-UI.s1 /CLONE=UI-R-A1-ea-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.32611.1 /TIER=ConsEnd /STK=1 /UG=Rn.32611 /UG_TITLE=ESTs, Weakly similar to YS11_DROME HYPOTHETICAL PROTEIN CG2811 (D.melanogaster) AA924588 AIG2-like domain 1 A2ld1 290500 NM_001025634 0042219 // cellular amino acid derivative catabolic process // not recorded /// 0042219 // cellular amino acid derivative catabolic process // inferred from sequence or structural similarity /// 0042219 // cellular amino acid derivative catabolic process // inferred from electronic annotation 0003839 // gamma-glutamylcyclotransferase activity // not recorded /// 0003839 // gamma-glutamylcyclotransferase activity // inferred from sequence or structural similarity /// 0003839 // gamma-glutamylcyclotransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1392726_at AI059453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059453 /DB_XREF=gi:3333230 /DB_XREF=UI-R-C1-kw-h-10-0-UI.s1 /CLONE=UI-R-C1-kw-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.21088.1 /TIER=ConsEnd /STK=1 /UG=Rn.21088 /UG_TITLE=ESTs AI059453 pyruvate dehydrogenase phosphatase regulatory subunit Pdpr 307852 NM_001107430 0006546 // glycine catabolic process // inferred from electronic annotation /// 0010510 // regulation of acetyl-CoA biosynthetic process from pyruvate // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0004047 // aminomethyltransferase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1392727_at AI235560 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235560 /DB_XREF=gi:3829066 /DB_XREF=EST232122 /CLONE=ROVCT47 /FEA=EST /CNT=3 /TID=Rn.25334.1 /TIER=ConsEnd /STK=1 /UG=Rn.25334 /UG_TITLE=ESTs AI235560 similar to KIAA1009 protein RGD1307365 300880 XM_001054857 /// XM_001063109 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392728_at AW144027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144027 /DB_XREF=gi:6163926 /DB_XREF=EST294323 /CLONE=RGICF56 /FEA=EST /CNT=3 /TID=Rn.24590.1 /TIER=ConsEnd /STK=1 /UG=Rn.24590 /UG_TITLE=ESTs AW144027 1392729_at AI502692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502692 /DB_XREF=gi:4400543 /DB_XREF=UI-R-C1-le-b-07-0-UI.s1 /CLONE=UI-R-C1-le-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.23746.1 /TIER=ConsEnd /STK=1 /UG=Rn.23746 /UG_TITLE=ESTs AI502692 1392730_at AI144948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144948 /DB_XREF=gi:3666747 /DB_XREF=UI-R-BT0-pp-g-10-0-UI.s1 /CLONE=UI-R-BT0-pp-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.23817.1 /TIER=ConsEnd /STK=1 /UG=Rn.23817 /UG_TITLE=ESTs AI144948 1392731_at BM390522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390522 /DB_XREF=gi:18190575 /DB_XREF=UI-R-CN1-cjr-a-09-0-UI.s1 /CLONE=UI-R-CN1-cjr-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.32448.1 /TIER=ConsEnd /STK=1 /UG=Rn.32448 /UG_TITLE=ESTs BM390522 tumor necrosis factor receptor superfamily, member 1b Tnfrsf1b 156767 NM_130426 0006954 // inflammatory response // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from direct assay /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0008219 // cell death // inferred from electronic annotation /// 0008219 // cell death // not recorded /// 0033209 // tumor necrosis factor-mediated signaling pathway // not recorded /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // not recorded /// 0050779 // RNA destabilization // inferred from electronic annotation /// 0050779 // RNA destabilization // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005031 // tumor necrosis factor receptor activity // inferred from direct assay /// 0005031 // tumor necrosis factor receptor activity // not recorded /// 0005031 // tumor necrosis factor receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392732_at AI711233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711233 /DB_XREF=gi:5001009 /DB_XREF=UI-R-AE1-zc-g-03-0-UI.s1 /CLONE=UI-R-AE1-zc-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.76232.1 /TIER=ConsEnd /STK=1 /UG=Rn.76232 /UG_TITLE=ESTs AI711233 nucleolar and spindle associated protein 1 Nusap1 311336 NM_001107762 0000070 // mitotic sister chromatid segregation // not recorded /// 0000070 // mitotic sister chromatid segregation // inferred from electronic annotation /// 0000281 // cytokinesis after mitosis // not recorded /// 0000281 // cytokinesis after mitosis // inferred from electronic annotation /// 0007076 // mitotic chromosome condensation // not recorded /// 0007076 // mitotic chromosome condensation // inferred from electronic annotation /// 0040001 // establishment of mitotic spindle localization // not recorded /// 0040001 // establishment of mitotic spindle localization // inferred from electronic annotation /// 0045840 // positive regulation of mitosis // not recorded /// 0045840 // positive regulation of mitosis // inferred from electronic annotation 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded /// 0005876 // spindle microtubule // inferred from electronic annotation 0008017 // microtubule binding // not recorded /// 0008017 // microtubule binding // inferred from electronic annotation 1392733_at BM391545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391545 /DB_XREF=gi:18191598 /DB_XREF=UI-R-DY0-ckr-m-20-0-UI.s1 /CLONE=UI-R-DY0-ckr-m-20-0-UI /FEA=EST /CNT=3 /TID=Rn.25388.1 /TIER=ConsEnd /STK=1 /UG=Rn.25388 /UG_TITLE=ESTs BM391545 1392734_at AI145667 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145667 /DB_XREF=gi:3667466 /DB_XREF=UI-R-BT0-qd-a-06-0-UI.s1 /CLONE=UI-R-BT0-qd-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.19731.1 /TIER=ConsEnd /STK=1 /UG=Rn.19731 /UG_TITLE=ESTs AI145667 neuronal cell adhesion molecule Nrcam 497815 NM_013150 0007155 // cell adhesion // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0019227 // neuronal action potential propagation // inferred from electronic annotation /// 0019227 // neuronal action potential propagation // not recorded /// 0045162 // clustering of voltage-gated sodium channels // not recorded /// 0045162 // clustering of voltage-gated sodium channels // inferred from sequence or structural similarity 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030506 // ankyrin binding // not recorded /// 0030506 // ankyrin binding // inferred from sequence or structural similarity /// 0030506 // ankyrin binding // traceable author statement 1392735_at AI229265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229265 /DB_XREF=gi:3813152 /DB_XREF=EST225960 /CLONE=RBRDG19 /FEA=EST /CNT=3 /TID=Rn.55343.1 /TIER=ConsEnd /STK=1 /UG=Rn.55343 /UG_TITLE=ESTs AI229265 1392736_at AW532939 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532939 /DB_XREF=gi:7175353 /DB_XREF=UI-R-BU0-ang-h-10-0-UI.s1 /CLONE=UI-R-BU0-ang-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.24679.1 /TIER=ConsEnd /STK=1 /UG=Rn.24679 /UG_TITLE=ESTs AW532939 1392737_at AI044644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044644 /DB_XREF=gi:3291505 /DB_XREF=UI-R-C1-jx-b-12-0-UI.s1 /CLONE=UI-R-C1-jx-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.15979.1 /TIER=ConsEnd /STK=1 /UG=Rn.15979 /UG_TITLE=ESTs AI044644 1392738_at AI602954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602954 /DB_XREF=gi:4612115 /DB_XREF=UI-R-AC1-xt-g-12-0-UI.s1 /CLONE=UI-R-AC1-xt-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.64833.1 /TIER=ConsEnd /STK=1 /UG=Rn.64833 /UG_TITLE=ESTs, Weakly similar to BAT2_HUMAN LARGE PROLINE-RICH PROTEIN BAT2 (H.sapiens) AI602954 BAT2 domain containing 1 Bat2d1 360865 XM_002724884 /// XM_341141 0008022 // protein C-terminus binding // not recorded 1392739_a_at AI454794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454794 /DB_XREF=gi:4296217 /DB_XREF=UI-R-C2p-qm-d-07-0-UI.s1 /CLONE=UI-R-C2p-qm-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.17727.1 /TIER=ConsEnd /STK=1 /UG=Rn.17727 /UG_TITLE=ESTs AI454794 endonuclease/exonuclease/phosphatase family domain containing 1 Eepd1 315500 NM_001014088 0006281 // DNA repair // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1392740_at AI070435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070435 /DB_XREF=gi:3396686 /DB_XREF=UI-R-C2-mq-c-07-0-UI.s1 /CLONE=UI-R-C2-mq-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.19755.1 /TIER=ConsEnd /STK=1 /UG=Rn.19755 /UG_TITLE=ESTs, Moderately similar to LIPOAMIDE ACYLTRANSFERASE COMPONENT PRECURSOR OF BRANCHED-CHAIN ALPHA-KETO ACID DEHYDROGENASE COMPLEX (M.musculus) AI070435 dihydrolipoamide branched chain transacylase E2 Dbt 29611 NM_053312 0008152 // metabolic process // inferred from electronic annotation /// 0046949 // fatty-acyl-CoA biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0043754 // dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation 1392741_at AI145364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145364 /DB_XREF=gi:3667157 /DB_XREF=UI-R-BT0-qe-a-12-0-UI.s1 /CLONE=UI-R-BT0-qe-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.23993.1 /TIER=ConsEnd /STK=1 /UG=Rn.23993 /UG_TITLE=ESTs AI145364 1392742_at AI230806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230806 /DB_XREF=gi:3814693 /DB_XREF=EST227501 /CLONE=REMDB46 /FEA=EST /CNT=3 /TID=Rn.40213.2 /TIER=ConsEnd /STK=1 /UG=Rn.40213 /UG_TITLE=ESTs AI230806 1392743_at BI278157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278157 /DB_XREF=gi:14924730 /DB_XREF=UI-R-CZ0-bye-b-01-0-UI.s1 /CLONE=UI-R-CZ0-bye-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.77753.1 /TIER=ConsEnd /STK=1 /UG=Rn.77753 /UG_TITLE=ESTs BI278157 myc induced nuclear antigen Mina 266670 NM_153309 0008283 // cell proliferation // inferred from mutant phenotype /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 1392744_at AI179130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179130 /DB_XREF=gi:3729768 /DB_XREF=EST222814 /CLONE=RSPCC22 /FEA=EST /CNT=3 /TID=Rn.21268.1 /TIER=ConsEnd /STK=1 /UG=Rn.21268 /UG_TITLE=ESTs AI179130 ATG7 autophagy related 7 homolog (S. cerevisiae) Atg7 312647 NM_001012097 0001889 // liver development // not recorded /// 0006497 // protein lipidation // inferred from electronic annotation /// 0006497 // protein lipidation // not recorded /// 0006520 // cellular amino acid metabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0006914 // autophagy // inferred from expression pattern /// 0006914 // autophagy // not recorded /// 0006996 // organelle organization // not recorded /// 0007628 // adult walking behavior // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0021680 // cerebellar Purkinje cell layer development // not recorded /// 0021860 // pyramidal neuron development // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0030163 // protein catabolic process // not recorded /// 0031175 // neuron projection development // not recorded /// 0031396 // regulation of protein ubiquitination // not recorded /// 0031401 // positive regulation of protein modification process // inferred from electronic annotation /// 0031401 // positive regulation of protein modification process // not recorded /// 0032446 // protein modification by small protein conjugation // not recorded /// 0042594 // response to starvation // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0050877 // neurological system process // not recorded /// 0055013 // cardiac muscle cell development // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004839 // ubiquitin activating enzyme activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019778 // APG12 activating enzyme activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1392745_at BG380502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380502 /DB_XREF=gi:13304974 /DB_XREF=UI-R-CT0-bty-a-09-0-UI.s1 /CLONE=UI-R-CT0-bty-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.64273.1 /TIER=ConsEnd /STK=1 /UG=Rn.64273 /UG_TITLE=ESTs, Weakly similar to W01A8.2.p (Caenorhabditis elegans) (C.elegans) BG380502 similar to RIKEN cDNA 3110040N11 RGD1305713 293059 NM_001024749 1392746_x_at BF394189 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394189 /DB_XREF=gi:11379053 /DB_XREF=UI-R-CA0-bhb-c-06-0-UI.s1 /CLONE=UI-R-CA0-bhb-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.24954.2 /TIER=ConsEnd /STK=1 /UG=Rn.24954 /UG_TITLE=ESTs, Highly similar to T42646 hypothetical protein DKFZp727K171.1 (H.sapiens) BF394189 La ribonucleoprotein domain family, member 1 Larp1 303158 XM_001075150 /// XM_220446 0005515 // protein binding // not recorded 1392747_at AI030920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030920 /DB_XREF=gi:3248746 /DB_XREF=UI-R-C0-jf-f-11-0-UI.s1 /CLONE=UI-R-C0-jf-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.33313.1 /TIER=ConsEnd /STK=1 /UG=Rn.33313 /UG_TITLE=ESTs AI030920 1392748_at AI235594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235594 /DB_XREF=gi:3829100 /DB_XREF=EST232156 /CLONE=ROVCT92 /FEA=EST /CNT=3 /TID=Rn.49284.1 /TIER=ConsEnd /STK=1 /UG=Rn.49284 /UG_TITLE=ESTs, Highly similar to Y779_HUMAN Hypothetical protein KIAA0779 (H.sapiens) AI235594 Transmembrane and coiled-coil domain family 1 Tmcc1 312654 XM_001054467 /// XM_232287 1392749_at BE109686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109686 /DB_XREF=gi:8501791 /DB_XREF=UI-R-BJ1-aup-a-02-0-UI.s1 /CLONE=UI-R-BJ1-aup-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.55036.1 /TIER=ConsEnd /STK=1 /UG=Rn.55036 /UG_TITLE=ESTs BE109686 ciliary neurotrophic factor receptor Cntfr 313173 NM_001003929 0008284 // positive regulation of cell proliferation // not recorded /// 0070120 // ciliary neurotrophic factor-mediated signaling pathway // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004897 // ciliary neurotrophic factor receptor activity // inferred from mutant phenotype /// 0004897 // ciliary neurotrophic factor receptor activity // not recorded /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0019955 // cytokine binding // inferred from physical interaction /// 0019955 // cytokine binding // not recorded 1392750_at BF288406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288406 /DB_XREF=gi:11219476 /DB_XREF=EST452997 /CLONE=RGIGT44 /FEA=EST /CNT=3 /TID=Rn.7087.1 /TIER=ConsEnd /STK=1 /UG=Rn.7087 /UG_TITLE=ESTs BF288406 1392751_at AI029410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029410 /DB_XREF=gi:4298374 /DB_XREF=UI-R-C0-iw-f-11-0-UI.s1 /CLONE=UI-R-C0-iw-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.18216.1 /TIER=ConsEnd /STK=1 /UG=Rn.18216 /UG_TITLE=ESTs, Weakly similar to S46216 leukocyte antigen-related protein precursor - rat (R.norvegicus) AI029410 fibronectin type III domain containing 3C1 Fndc3c1 317224 NM_001191722 /// XM_001054443 /// XM_228509 1392752_at AI101540 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101540 /DB_XREF=gi:3706428 /DB_XREF=EST210829 /CLONE=RBRBS05 /FEA=EST /CNT=3 /TID=Rn.23276.1 /TIER=ConsEnd /STK=1 /UG=Rn.23276 /UG_TITLE=ESTs AI101540 SFRS12-interacting protein 1 Sfrs12ip1 361888 NM_001008373 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392753_at AA875468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875468 /DB_XREF=gi:4231346 /DB_XREF=UI-R-E0-cp-c-10-0-UI.s1 /CLONE=UI-R-E0-cp-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.40564.1 /TIER=ConsEnd /STK=1 /UG=Rn.40564 /UG_TITLE=ESTs AA875468 1392754_at AA946147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946147 /DB_XREF=gi:3106063 /DB_XREF=EST201646 /CLONE=RLUBB71 /FEA=EST /CNT=3 /TID=Rn.7996.1 /TIER=ConsEnd /STK=1 /UG=Rn.7996 /UG_TITLE=ESTs AA946147 ADAM metallopeptidase domain 8 Adam8 499285 XM_001056204 /// XM_574584 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0016337 // cell-cell adhesion // not recorded 0005886 // plasma membrane // not recorded 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008237 // metallopeptidase activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1392755_at AW920702 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920702 /DB_XREF=gi:8086516 /DB_XREF=EST352006 /CLONE=RGIHB28 /FEA=EST /CNT=3 /TID=Rn.25285.1 /TIER=ConsEnd /STK=1 /UG=Rn.25285 /UG_TITLE=ESTs, Weakly similar to densin-180 (Rattus norvegicus) (R.norvegicus) AW920702 leucine rich repeat containing 8 family, member C Lrrc8c 289443 NM_001037179 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1392756_at AI237628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237628 /DB_XREF=gi:3831134 /DB_XREF=EST234190 /CLONE=RPLDB64 /FEA=EST /CNT=3 /TID=Rn.43562.1 /TIER=ConsEnd /STK=1 /UG=Rn.43562 /UG_TITLE=ESTs AI237628 1392757_at AA850587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850587 /DB_XREF=gi:2938127 /DB_XREF=EST193355 /FEA=EST /CNT=3 /TID=Rn.7431.1 /TIER=ConsEnd /STK=1 /UG=Rn.7431 /UG_TITLE=ESTs AA850587 1392758_at AA943056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943056 /DB_XREF=gi:3102972 /DB_XREF=EST198555 /CLONE=RBRAE33 /FEA=EST /CNT=3 /TID=Rn.56134.1 /TIER=ConsEnd /STK=1 /UG=Rn.56134 /UG_TITLE=ESTs, Weakly similar to splicing factor, arginineserine-rich (transformer 2 Drosophila homolog) 10 (Rattus norvegicus) (R.norvegicus) AA943056 transformer 2 alpha homolog (Drosophila) Tra2a 500116 NM_001126296 0000398 // nuclear mRNA splicing, via spliceosome // inferred from electronic annotation /// 0000398 // nuclear mRNA splicing, via spliceosome // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1392759_at AI176732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176732 /DB_XREF=gi:3727370 /DB_XREF=EST220325 /CLONE=ROVBW15 /FEA=EST /CNT=3 /TID=Rn.65164.1 /TIER=ConsEnd /STK=1 /UG=Rn.65164 /UG_TITLE=ESTs AI176732 triggering receptor expressed on myeloid cells 2 Trem2 301227 NM_001106884 0005886 // plasma membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation 1392760_at AW920326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920326 /DB_XREF=gi:8086135 /DB_XREF=EST351630 /CLONE=RGIGU11 /FEA=EST /CNT=3 /TID=Rn.49280.1 /TIER=ConsEnd /STK=1 /UG=Rn.49280 /UG_TITLE=ESTs AW920326 Hermansky-Pudlak syndrome 1 homolog (human) Hps1 114638 NM_040669 0006996 // organelle organization // not recorded /// 0007596 // blood coagulation // not recorded /// 0030318 // melanocyte differentiation // not recorded /// 0032816 // positive regulation of natural killer cell activation // not recorded /// 0033299 // secretion of lysosomal enzymes // not recorded /// 0043473 // pigmentation // not recorded 0016023 // cytoplasmic membrane-bounded vesicle // not recorded 0005515 // protein binding // not recorded /// 0046983 // protein dimerization activity // not recorded 1392761_at BM389886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389886 /DB_XREF=gi:18189939 /DB_XREF=UI-R-CN1-cji-f-14-0-UI.s1 /CLONE=UI-R-CN1-cji-f-14-0-UI /FEA=EST /CNT=3 /TID=Rn.45660.1 /TIER=ConsEnd /STK=1 /UG=Rn.45660 /UG_TITLE=ESTs BM389886 1392762_at BF559727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559727 /DB_XREF=gi:11669457 /DB_XREF=UI-R-E1-go-a-08-0-UI.r1 /CLONE=UI-R-E1-go-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.22793.1 /TIER=ConsEnd /STK=1 /UG=Rn.22793 /UG_TITLE=ESTs BF559727 RAD18 homolog (S. cerevisiae) Rad18 362412 NM_001077673 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0007283 // spermatogenesis // not recorded /// 0009411 // response to UV // not recorded /// 0045910 // negative regulation of DNA recombination // not recorded 0000785 // chromatin // not recorded /// 0001741 // XY body // not recorded /// 0005634 // nucleus // not recorded /// 0005657 // replication fork // not recorded 0000403 // Y-form DNA binding // not recorded /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1392763_at BF390804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390804 /DB_XREF=gi:11375651 /DB_XREF=UI-R-CA1-bcp-f-05-0-UI.s1 /CLONE=UI-R-CA1-bcp-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.57282.1 /TIER=ConsEnd /STK=1 /UG=Rn.57282 /UG_TITLE=ESTs, Highly similar to PLCA MOUSE 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE ALPHA (M.musculus) BF390804 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) Agpat1 406165 NM_212458 0001819 // positive regulation of cytokine production // not recorded /// 0006654 // phosphatidic acid biosynthetic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // not recorded /// 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // inferred from sequence or structural similarity /// 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046027 // phospholipid:diacylglycerol acyltransferase activity // not recorded 1392764_at BE115434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115434 /DB_XREF=gi:8507539 /DB_XREF=UI-R-BS1-axu-g-02-0-UI.s1 /CLONE=UI-R-BS1-axu-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.54206.1 /TIER=ConsEnd /STK=1 /UG=Rn.54206 /UG_TITLE=ESTs BE115434 1392765_at AA965019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965019 /DB_XREF=gi:4279893 /DB_XREF=UI-R-C0-gr-h-08-0-UI.s1 /CLONE=UI-R-C0-gr-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.23242.1 /TIER=ConsEnd /STK=1 /UG=Rn.23242 /UG_TITLE=ESTs, Moderately similar to S21348 probable pol polyprotein-related protein 4 - rat (R.norvegicus) AA965019 1392766_at AI059752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059752 /DB_XREF=gi:3333529 /DB_XREF=UI-R-C1-lk-h-01-0-UI.s1 /CLONE=UI-R-C1-lk-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.21135.1 /TIER=ConsEnd /STK=1 /UG=Rn.21135 /UG_TITLE=ESTs AI059752 1392767_at AI502349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502349 /DB_XREF=gi:4400200 /DB_XREF=UI-R-C1-lk-g-07-0-UI.s1 /CLONE=UI-R-C1-lk-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.36668.1 /TIER=ConsEnd /STK=1 /UG=Rn.36668 /UG_TITLE=ESTs AI502349 1392768_at AA900944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900944 /DB_XREF=gi:4233440 /DB_XREF=UI-R-E0-dj-c-10-0-UI.s1 /CLONE=UI-R-E0-dj-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.7111.1 /TIER=ConsEnd /STK=1 /UG=Rn.7111 /UG_TITLE=ESTs AA900944 ASF1 anti-silencing function 1 homolog A (S. cerevisiae) Asf1a 294408 NM_001106389 0006281 // DNA repair // not recorded /// 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006334 // nucleosome assembly // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016585 // chromatin remodeling complex // not recorded 0042393 // histone binding // not recorded 1392769_at AA996520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996520 /DB_XREF=gi:4280287 /DB_XREF=UI-R-C0-he-c-11-0-UI.s1 /CLONE=UI-R-C0-he-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.45578.1 /TIER=ConsEnd /STK=1 /UG=Rn.45578 /UG_TITLE=ESTs AA996520 1392770_at BF415817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415817 /DB_XREF=gi:11403806 /DB_XREF=UI-R-CA1-bkf-c-07-0-UI.s1 /CLONE=UI-R-CA1-bkf-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.35979.1 /TIER=ConsEnd /STK=1 /UG=Rn.35979 /UG_TITLE=ESTs, Weakly similar to NEO1_RAT NEOGENIN PRECURSOR (R.norvegicus) BF415817 neogenin homolog 1 (chicken) Neo1 81735 NM_001191881 /// XM_001074913 /// XM_343402 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007520 // myoblast fusion // not recorded /// 0045449 // regulation of transcription // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // not recorded /// 0045296 // cadherin binding // not recorded 1392771_at AI511314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511314 /DB_XREF=gi:4417013 /DB_XREF=UI-R-C3-sv-g-02-0-UI.s1 /CLONE=UI-R-C3-sv-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.22537.1 /TIER=ConsEnd /STK=1 /UG=Rn.22537 /UG_TITLE=ESTs AI511314 Similar to KIAA1549 protein RGD1306271 312246 XM_001069222 /// XM_231616 1392772_at BF285633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285633 /DB_XREF=gi:11216703 /DB_XREF=EST450224 /CLONE=RGIFH92 /FEA=EST /CNT=3 /TID=Rn.28032.1 /TIER=ConsEnd /STK=1 /UG=Rn.28032 /UG_TITLE=ESTs BF285633 1392773_at AA859578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859578 /DB_XREF=gi:4230124 /DB_XREF=UI-R-E0-bv-c-10-0-UI.s1 /CLONE=UI-R-E0-bv-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.22620.1 /TIER=ConsEnd /STK=1 /UG=Rn.22620 /UG_TITLE=ESTs, Highly similar to SERINE PROTEASE PC6 PRECURSOR (R.norvegicus) AA859578 proprotein convertase subtilisin/kexin type 5 Pcsk5 116548 XM_001078022 /// XM_342032 0001822 // kidney development // not recorded /// 0002001 // renin secretion into blood stream // not recorded /// 0006465 // signal peptide processing // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007566 // embryo implantation // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0016486 // peptide hormone processing // not recorded /// 0019067 // viral assembly, maturation, egress, and release // not recorded /// 0030323 // respiratory tube development // not recorded /// 0032455 // nerve growth factor processing // not recorded /// 0035108 // limb morphogenesis // not recorded /// 0042089 // cytokine biosynthetic process // not recorded /// 0043043 // peptide biosynthetic process // not recorded /// 0048566 // embryonic digestive tract development // not recorded /// 0048706 // embryonic skeletal system development // not recorded /// 0051605 // protein maturation by peptide bond cleavage // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005796 // Golgi lumen // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030141 // stored secretory granule // not recorded 0004175 // endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042277 // peptide binding // not recorded 1392774_at BF284310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284310 /DB_XREF=gi:11215380 /DB_XREF=EST448901 /CLONE=RGIEO21 /FEA=EST /CNT=3 /TID=Rn.23974.1 /TIER=ConsEnd /STK=1 /UG=Rn.23974 /UG_TITLE=ESTs BF284310 1392775_at AI136598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136598 /DB_XREF=gi:3637375 /DB_XREF=UI-R-C2p-ob-b-12-0-UI.s1 /CLONE=UI-R-C2p-ob-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.23686.1 /TIER=ConsEnd /STK=1 /UG=Rn.23686 /UG_TITLE=ESTs AI136598 1392776_at AI058733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058733 /DB_XREF=gi:3332510 /DB_XREF=UI-R-C1-kp-c-05-0-UI.s1 /CLONE=UI-R-C1-kp-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.20984.1 /TIER=ConsEnd /STK=1 /UG=Rn.20984 /UG_TITLE=ESTs AI058733 1392777_at BF287676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287676 /DB_XREF=gi:11218746 /DB_XREF=EST452267 /CLONE=RGIGI64 /FEA=EST /CNT=3 /TID=Rn.14830.1 /TIER=ConsEnd /STK=1 /UG=Rn.14830 /UG_TITLE=ESTs BF287676 1392778_at AA891634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891634 /DB_XREF=gi:3018513 /DB_XREF=EST195437 /CLONE=RKIAE87 /FEA=EST /CNT=3 /TID=Rn.14700.1 /TIER=ConsEnd /STK=1 /UG=Rn.14700 /UG_TITLE=ESTs AA891634 1392779_at BF551105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551105 /DB_XREF=gi:11660835 /DB_XREF=UI-R-C0-ik-g-03-0-UI.r1 /CLONE=UI-R-C0-ik-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.18137.1 /TIER=ConsEnd /STK=1 /UG=Rn.18137 /UG_TITLE=ESTs BF551105 1392780_at BF283270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283270 /DB_XREF=gi:11214340 /DB_XREF=EST447861 /CLONE=RGIDZ59 /FEA=EST /CNT=3 /TID=Rn.24735.1 /TIER=ConsEnd /STK=1 /UG=Rn.24735 /UG_TITLE=ESTs, Weakly similar to B Chain B, Structural Basis For The Recognition Of A Nucleoporin Fg- Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Nuclear Export Factor (H.sapiens) BF283270 nuclear RNA export factor 7 Nxf7 501621 NM_001037216 0006406 // mRNA export from nucleus // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0015629 // actin cytoskeleton // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0005487 // nucleocytoplasmic transporter activity // inferred from electronic annotation 1392781_at BF289052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289052 /DB_XREF=gi:11220122 /DB_XREF=EST453643 /CLONE=RGIHA67 /FEA=EST /CNT=3 /TID=Rn.25265.1 /TIER=ConsEnd /STK=1 /UG=Rn.25265 /UG_TITLE=ESTs BF289052 serine peptidase inhibitor-like, with Kunitz and WAP domains 1 (eppin) Spinlw1 685161 NM_001109457 0001669 // acrosomal vesicle // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1392782_at AI071197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071197 /DB_XREF=gi:3397412 /DB_XREF=UI-R-C2-my-a-08-0-UI.s1 /CLONE=UI-R-C2-my-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.33474.1 /TIER=ConsEnd /STK=1 /UG=Rn.33474 /UG_TITLE=ESTs AI071197 1392783_at AI136436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136436 /DB_XREF=gi:3637213 /DB_XREF=UI-R-C2p-ns-c-07-0-UI.s1 /CLONE=UI-R-C2p-ns-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.22799.2 /TIER=ConsEnd /STK=1 /UG=Rn.22799 /UG_TITLE=ESTs AI136436 1392784_at BF555051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555051 /DB_XREF=gi:11664781 /DB_XREF=UI-R-E0-cg-f-04-0-UI.r1 /CLONE=UI-R-E0-cg-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.65517.1 /TIER=ConsEnd /STK=1 /UG=Rn.65517 /UG_TITLE=ESTs, Weakly similar to VITAMIN K-DEPENDENT PROTEIN S PRECURSOR (R.norvegicus) BF555051 growth arrest specific 6 Gas6 58935 NM_057100 0009267 // cellular response to starvation // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0040008 // regulation of growth // inferred from electronic annotation /// 0042246 // tissue regeneration // traceable author statement /// 0048771 // tissue remodeling // traceable author statement /// 0071363 // cellular response to growth factor stimulus // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0008083 // growth factor activity // traceable author statement /// 0030971 // receptor tyrosine kinase binding // traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 1392785_at AA800908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800908 /DB_XREF=gi:2863863 /DB_XREF=EST190405 /CLONE=RLUAM90 /FEA=EST /CNT=3 /TID=Rn.54617.1 /TIER=ConsEnd /STK=1 /UG=Rn.54617 /UG_TITLE=ESTs AA800908 1392786_at BG668812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668812 /DB_XREF=gi:13890734 /DB_XREF=DRNBPE02 /CLONE=DRNBPE02 /FEA=EST /CNT=3 /TID=Rn.22869.2 /TIER=ConsEnd /STK=1 /UG=Rn.22869 /UG_TITLE=ESTs, Weakly similar to T12449 hypothetical protein DKFZp564E1616.1 (H.sapiens) BG668812 dysferlin Dysf 312492 NM_001107869 0001778 // plasma membrane repair // not recorded /// 0006906 // vesicle fusion // not recorded 0016021 // integral to membrane // inferred from electronic annotation /// 0030315 // T-tubule // not recorded /// 0042383 // sarcolemma // not recorded 0005515 // protein binding // not recorded /// 0005543 // phospholipid binding // not recorded 1392787_at AI137845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137845 /DB_XREF=gi:3638622 /DB_XREF=UI-R-C0-ii-e-06-0-UI.s1 /CLONE=UI-R-C0-ii-e-06-0-UI /FEA=EST /CNT=4 /TID=Rn.22135.1 /TIER=ConsEnd /STK=1 /UG=Rn.22135 /UG_TITLE=ESTs AI137845 1392788_at AA944323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944323 /DB_XREF=gi:3104239 /DB_XREF=EST199822 /CLONE=REMAF39 /FEA=EST /CNT=4 /TID=Rn.22990.1 /TIER=ConsEnd /STK=1 /UG=Rn.22990 /UG_TITLE=ESTs AA944323 1392789_at BI296353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296353 /DB_XREF=gi:14960699 /DB_XREF=UI-R-DK0-cez-d-04-0-UI.s1 /CLONE=UI-R-DK0-cez-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.15227.1 /TIER=ConsEnd /STK=1 /UG=Rn.15227 /UG_TITLE=ESTs BI296353 solute carrier family 25, member 36 Slc25a36 501039 XM_001065705 /// XM_576451 0032355 // response to estradiol stimulus // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1392790_at BF283033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283033 /DB_XREF=gi:11214103 /DB_XREF=EST447624 /CLONE=RGIDW55 /FEA=EST /CNT=3 /TID=Rn.24660.1 /TIER=ConsEnd /STK=1 /UG=Rn.24660 /UG_TITLE=ESTs BF283033 1392791_at AA964492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964492 /DB_XREF=gi:4279366 /DB_XREF=UI-R-E1-go-h-05-0-UI.s1 /CLONE=UI-R-E1-go-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.65683.1 /TIER=ConsEnd /STK=1 /UG=Rn.65683 /UG_TITLE=ESTs AA964492 1392792_at AI071152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071152 /DB_XREF=gi:3397367 /DB_XREF=UI-R-C2-mt-g-12-0-UI.s1 /CLONE=UI-R-C2-mt-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.44530.1 /TIER=ConsEnd /STK=1 /UG=Rn.44530 /UG_TITLE=ESTs AI071152 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor Taf1 317256 NM_001191723 /// XM_001061884 /// XM_228551 0000080 // G1 phase of mitotic cell cycle // not recorded /// 0006352 // transcription initiation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016573 // histone acetylation // not recorded /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0018107 // peptidyl-threonine phosphorylation // not recorded /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046777 // protein autophosphorylation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005669 // transcription factor TFIID complex // inferred from electronic annotation /// 0005669 // transcription factor TFIID complex // not recorded /// 0005730 // nucleolus // not recorded /// 0045120 // pronucleus // not recorded /// 0071339 // MLL1 complex // not recorded 0002039 // p53 binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003713 // transcription coactivator activity // not recorded /// 0004402 // histone acetyltransferase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0017025 // TATA-binding protein binding // not recorded /// 0070577 // histone acetyl-lysine binding // not recorded 1392793_at AA926030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926030 /DB_XREF=gi:4237221 /DB_XREF=UI-R-A1-el-a-06-0-UI.s1 /CLONE=UI-R-A1-el-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.15643.1 /TIER=ConsEnd /STK=1 /UG=Rn.15643 /UG_TITLE=ESTs AA926030 1392794_at AA893579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893579 /DB_XREF=gi:3020458 /DB_XREF=EST197382 /CLONE=RPLAC19 /FEA=EST /CNT=3 /TID=Rn.14809.1 /TIER=ConsEnd /STK=1 /UG=Rn.14809 /UG_TITLE=ESTs AA893579 1392795_at AA963069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963069 /DB_XREF=gi:4278039 /DB_XREF=UI-R-E1-fx-a-02-0-UI.s1 /CLONE=UI-R-E1-fx-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.22559.1 /TIER=ConsEnd /STK=1 /UG=Rn.22559 /UG_TITLE=ESTs AA963069 Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A Sema6a 361324 NM_001108430 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0051642 // centrosome localization // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030215 // semaphorin receptor binding // not recorded 1392796_at AI231609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231609 /DB_XREF=gi:3815489 /DB_XREF=EST228297 /CLONE=REMDM67 /FEA=EST /CNT=3 /TID=Rn.16306.1 /TIER=ConsEnd /STK=1 /UG=Rn.16306 /UG_TITLE=ESTs AI231609 CCR4-NOT transcription complex, subunit 6-like Cnot6l 360917 NM_001108355 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392797_at AI045916 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045916 /DB_XREF=gi:3292735 /DB_XREF=UI-R-C0-jq-h-06-0-UI.s2 /CLONE=UI-R-C0-jq-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.64540.1 /TIER=ConsEnd /STK=1 /UG=Rn.64540 /UG_TITLE=ESTs AI045916 similar to CGI-41 protein RGD1311265 361976 NM_001014173 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1392798_at AI639478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639478 /DB_XREF=gi:4700512 /DB_XREF=rx02311s /CLONE=rx02311 /FEA=EST /CNT=3 /TID=Rn.65154.1 /TIER=ConsEnd /STK=1 /UG=Rn.65154 /UG_TITLE=ESTs, Weakly similar to PDI RAT PROTEIN DISULFIDE ISOMERASE PRECURSOR (R.norvegicus) AI639478 protein disulfide isomerase family A, member 2 Pdia2 287164 NM_001105775 0001666 // response to hypoxia // not recorded /// 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded 0005515 // protein binding // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1392799_at AI013895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013895 /DB_XREF=gi:3227951 /DB_XREF=EST208570 /CLONE=RSPBZ19 /FEA=EST /CNT=2 /TID=Rn.48888.1 /TIER=ConsEnd /STK=1 /UG=Rn.48888 /UG_TITLE=ESTs, Highly similar to APHC_MOUSE ALKALINE PHYTOCERAMIDASE (APHC) (ALKALINE CERAMIDASE) (M.musculus) AI013895 1392800_at BI290686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290686 /DB_XREF=gi:14949490 /DB_XREF=UI-R-DK0-cfy-b-12-0-UI.s1 /CLONE=UI-R-DK0-cfy-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.72645.1 /TIER=ConsEnd /STK=1 /UG=Rn.72645 /UG_TITLE=ESTs BI290686 similar to hypothetical protein MGC17337 RGD1308165 362516 NM_001108664 0042802 // identical protein binding // not recorded 1392801_at AW535232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535232 /DB_XREF=gi:7177607 /DB_XREF=UI-R-C4-alu-c-08-0-UI.s1 /CLONE=UI-R-C4-alu-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.48445.1 /TIER=ConsEnd /STK=1 /UG=Rn.48445 /UG_TITLE=ESTs AW535232 similar to novel protein RGD1561145 498580 NM_001134605 1392802_at BI274292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274292 /DB_XREF=gi:14885086 /DB_XREF=UI-R-CW0-bwh-c-01-0-UI.s1 /CLONE=UI-R-CW0-bwh-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.79965.1 /TIER=ConsEnd /STK=1 /UG=Rn.79965 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BI274292 similar to RIKEN cDNA 4930431E10 RGD1309707 690516 NM_001109598 0006464 // protein modification process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1392803_at AI232150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232150 /DB_XREF=gi:3816030 /DB_XREF=EST228838 /CLONE=RKIBX49 /FEA=EST /CNT=2 /TID=Rn.24617.1 /TIER=ConsEnd /STK=1 /UG=Rn.24617 /UG_TITLE=ESTs AI232150 1392804_at BI274504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274504 /DB_XREF=gi:14885474 /DB_XREF=UI-R-CW0-bwj-f-05-0-UI.s1 /CLONE=UI-R-CW0-bwj-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.59855.1 /TIER=ConsEnd /STK=1 /UG=Rn.59855 /UG_TITLE=ESTs, Weakly similar to DEOXYRIBONUCLEASE I PRECURSOR (R.norvegicus) BI274504 rCG35247-like LOC100364462 100364462 XM_002724656 /// XM_002724657 /// XM_002724658 0006308 // DNA catabolic process // inferred from electronic annotation 0004536 // deoxyribonuclease activity // inferred from electronic annotation 1392805_at AI171867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171867 /DB_XREF=gi:3711907 /DB_XREF=EST217855 /CLONE=RMUBR72 /FEA=EST /CNT=2 /TID=Rn.66030.1 /TIER=ConsEnd /STK=1 /UG=Rn.66030 /UG_TITLE=ESTs AI171867 glucosidase, alpha; neutral C Ganc 24382 NM_001145840 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004558 // alpha-glucosidase activity // not recorded /// 0030246 // carbohydrate binding // inferred from electronic annotation 1392806_at AI234807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234807 /DB_XREF=gi:3828313 /DB_XREF=EST231369 /CLONE=ROVCH94 /FEA=EST /CNT=2 /TID=Rn.50718.1 /TIER=ConsEnd /STK=1 /UG=Rn.50718 /UG_TITLE=ESTs AI234807 1392807_at AA875471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875471 /DB_XREF=gi:4231349 /DB_XREF=UI-R-E0-cp-d-01-0-UI.s1 /CLONE=UI-R-E0-cp-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.2927.1 /TIER=ConsEnd /STK=1 /UG=Rn.2927 /UG_TITLE=ESTs AA875471 ligase III, DNA, ATP-dependent Lig3 303369 NM_001012011 0006260 // DNA replication // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0033151 // V(D)J recombination // not recorded /// 0051103 // DNA ligation involved in DNA repair // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003909 // DNA ligase activity // not recorded /// 0003910 // DNA ligase (ATP) activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1392808_at BF402967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402967 /DB_XREF=gi:11390942 /DB_XREF=UI-R-CA0-bhj-g-11-0-UI.s1 /CLONE=UI-R-CA0-bhj-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.60166.1 /TIER=ConsEnd /STK=1 /UG=Rn.60166 /UG_TITLE=ESTs BF402967 1392809_at AI072437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072437 /DB_XREF=gi:3398631 /DB_XREF=UI-R-C2-nk-c-05-0-UI.s1 /CLONE=UI-R-C2-nk-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.21763.1 /TIER=ConsEnd /STK=1 /UG=Rn.21763 /UG_TITLE=ESTs AI072437 1392810_at AI178143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178143 /DB_XREF=gi:3728781 /DB_XREF=EST221807 /CLONE=RPLCM68 /FEA=EST /CNT=2 /TID=Rn.29180.1 /TIER=ConsEnd /STK=1 /UG=Rn.29180 /UG_TITLE=ESTs AI178143 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F Apobec3f 315137 NM_001033703 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016814 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392811_at BI289490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289490 /DB_XREF=gi:14947115 /DB_XREF=UI-R-DK0-cfh-f-11-0-UI.s1 /CLONE=UI-R-DK0-cfh-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.32184.1 /TIER=ConsEnd /STK=1 /UG=Rn.32184 /UG_TITLE=ESTs BI289490 ubiquitin specific peptidase 40 Usp40 316599 NM_001134885 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1392812_at AI058726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058726 /DB_XREF=gi:3332503 /DB_XREF=UI-R-C1-kp-b-04-0-UI.s1 /CLONE=UI-R-C1-kp-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.49834.1 /TIER=ConsEnd /STK=1 /UG=Rn.49834 /UG_TITLE=ESTs AI058726 1392813_at AI548994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548994 /DB_XREF=gi:4466482 /DB_XREF=UI-R-C3-tv-c-02-0-UI.s1 /CLONE=UI-R-C3-tv-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.23094.2 /TIER=ConsEnd /STK=1 /UG=Rn.23094 /UG_TITLE=ESTs, Weakly similar to SX10 RAT TRANSCRIPTION FACTOR SOX-10 (R.norvegicus) AI548994 SRY-box containing gene 9 LOC100361122 100361122 XM_002727836 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1392814_at AA893234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893234 /DB_XREF=gi:3020113 /DB_XREF=EST197037 /CLONE=RKIBD87 /FEA=EST /CNT=2 /TID=Rn.19947.1 /TIER=ConsEnd /STK=1 /UG=Rn.19947 /UG_TITLE=ESTs AA893234 1392815_at BE114489 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114489 /DB_XREF=gi:8506594 /DB_XREF=UI-R-CA0-axm-g-08-0-UI.s1 /CLONE=UI-R-CA0-axm-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.52403.1 /TIER=ConsEnd /STK=1 /UG=Rn.52403 /UG_TITLE=ESTs BE114489 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 Arap2 305367 NM_001107216 0007165 // signal transduction // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // not recorded /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1392816_at BI304039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI304039 /DB_XREF=gi:14980319 /DB_XREF=UI-R-DR0-cjc-i-10-0-UI.s1 /CLONE=UI-R-DR0-cjc-i-10-0-UI /FEA=EST /CNT=2 /TID=Rn.79048.1 /TIER=ConsEnd /STK=1 /UG=Rn.79048 /UG_TITLE=ESTs BI304039 similar to DNA segment, Chr 6, Wayne State University 163, expressed RGD1311164 297607 NM_001106623 1392817_at AI044553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044553 /DB_XREF=gi:3291414 /DB_XREF=UI-R-C1-jw-a-01-0-UI.s1 /CLONE=UI-R-C1-jw-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.20772.1 /TIER=ConsEnd /STK=1 /UG=Rn.20772 /UG_TITLE=ESTs AI044553 1392818_at BM384139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384139 /DB_XREF=gi:18184192 /DB_XREF=UI-R-DZ0-cks-l-23-0-UI.s1 /CLONE=UI-R-DZ0-cks-l-23-0-UI /FEA=EST /CNT=2 /TID=Rn.81393.1 /TIER=ConsEnd /STK=1 /UG=Rn.81393 /UG_TITLE=ESTs BM384139 growth arrest specific 5 Gas5 81714 NR_002704 1392819_at AW921478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921478 /DB_XREF=gi:8087302 /DB_XREF=EST352782 /CLONE=RGIHX53 /FEA=EST /CNT=2 /TID=Rn.12199.2 /TIER=ConsEnd /STK=1 /UG=Rn.12199 /UG_TITLE=ESTs, Weakly similar to FCEB RAT HIGH AFFINITY IMMUNOGLOBULIN EPSILON RECEPTOR BETA-SUBUNIT (R.norvegicus) AW921478 membrane-spanning 4-domains, subfamily A, member 11 Ms4a11 361735 XM_001075502 /// XM_342028 0016021 // integral to membrane // inferred from electronic annotation 1392820_at BI285064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285064 /DB_XREF=gi:14938336 /DB_XREF=UI-R-DB0-byv-g-08-0-UI.s1 /CLONE=UI-R-DB0-byv-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.78547.1 /TIER=ConsEnd /STK=1 /UG=Rn.78547 /UG_TITLE=ESTs BI285064 1392821_at AI234147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234147 /DB_XREF=gi:3818027 /DB_XREF=EST230835 /CLONE=RLUCV77 /FEA=EST /CNT=2 /TID=Rn.24786.1 /TIER=ConsEnd /STK=1 /UG=Rn.24786 /UG_TITLE=ESTs AI234147 similar to secreted Ly6/uPAR related protein 2 RGD1308195 315074 NM_001130551 1392822_at AA957509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957509 /DB_XREF=gi:4277399 /DB_XREF=UI-R-E1-gb-f-06-0-UI.s1 /CLONE=UI-R-E1-gb-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.24453.1 /TIER=ConsEnd /STK=1 /UG=Rn.24453 /UG_TITLE=ESTs AA957509 Neurofibromin 1 Nf1 24592 NM_012609 0000165 // MAPKKK cascade // not recorded /// 0000165 // MAPKKK cascade // inferred from sequence or structural similarity /// 0001649 // osteoblast differentiation // not recorded /// 0001649 // osteoblast differentiation // inferred from sequence or structural similarity /// 0001656 // metanephros development // not recorded /// 0001656 // metanephros development // inferred from sequence or structural similarity /// 0001666 // response to hypoxia // not recorded /// 0001666 // response to hypoxia // inferred from sequence or structural similarity /// 0001889 // liver development // not recorded /// 0001889 // liver development // inferred from sequence or structural similarity /// 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0001952 // regulation of cell-matrix adhesion // not recorded /// 0001952 // regulation of cell-matrix adhesion // inferred from sequence or structural similarity /// 0001953 // negative regulation of cell-matrix adhesion // not recorded /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from sequence or structural similarity /// 0007154 // cell communication // not recorded /// 0007154 // cell communication // inferred from sequence or structural similarity /// 0007165 // signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded /// 0007265 // Ras protein signal transduction // inferred from sequence or structural similarity /// 0007406 // negative regulation of neuroblast proliferation // not recorded /// 0007406 // negative regulation of neuroblast proliferation // inferred from sequence or structural similarity /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from sequence or structural similarity /// 0007422 // peripheral nervous system development // not recorded /// 0007422 // peripheral nervous system development // inferred from sequence or structural similarity /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from sequence or structural similarity /// 0007519 // skeletal muscle tissue development // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008542 // visual learning // not recorded /// 0008542 // visual learning // inferred from sequence or structural similarity /// 0014044 // Schwann cell development // not recorded /// 0014044 // Schwann cell development // inferred from sequence or structural similarity /// 0014065 // phosphoinositide 3-kinase cascade // not recorded /// 0014065 // phosphoinositide 3-kinase cascade // inferred from sequence or structural similarity /// 0016525 // negative regulation of angiogenesis // not recorded /// 0021510 // spinal cord development // not recorded /// 0021510 // spinal cord development // inferred from sequence or structural similarity /// 0021897 // forebrain astrocyte development // not recorded /// 0021897 // forebrain astrocyte development // inferred from sequence or structural similarity /// 0021915 // neural tube development // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0021987 // cerebral cortex development // inferred from sequence or structural similarity /// 0022011 // myelination in peripheral nervous system // not recorded /// 0022011 // myelination in peripheral nervous system // inferred from sequence or structural similarity /// 0030036 // actin cytoskeleton organization // not recorded /// 0030036 // actin cytoskeleton organization // inferred from sequence or structural similarity /// 0030198 // extracellular matrix organization // not recorded /// 0030198 // extracellular matrix organization // inferred from sequence or structural similarity /// 0030199 // collagen fibril organization // not recorded /// 0030199 // collagen fibril organization // inferred from sequence or structural similarity /// 0030325 // adrenal gland development // not recorded /// 0030325 // adrenal gland development // inferred from sequence or structural similarity /// 0030336 // negative regulation of cell migration // not recorded /// 0032228 // regulation of synaptic transmission, GABAergic // not recorded /// 0032318 // regulation of Ras GTPase activity // inferred from mutant phenotype /// 0032318 // regulation of Ras GTPase activity // not recorded /// 0032320 // positive regulation of Ras GTPase activity // not recorded /// 0032320 // positive regulation of Ras GTPase activity // inferred from sequence or structural similarity /// 0035021 // negative regulation of Rac protein signal transduction // not recorded /// 0042060 // wound healing // not recorded /// 0042060 // wound healing // inferred from sequence or structural similarity /// 0042127 // regulation of cell proliferation // not recorded /// 0042992 // negative regulation of transcription factor import into nucleus // not recorded /// 0042992 // negative regulation of transcription factor import into nucleus // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from sequence or structural similarity /// 0043407 // negative regulation of MAP kinase activity // not recorded /// 0043407 // negative regulation of MAP kinase activity // inferred from sequence or structural similarity /// 0043409 // negative regulation of MAPKKK cascade // not recorded /// 0043409 // negative regulation of MAPKKK cascade // inferred from sequence or structural similarity /// 0043473 // pigmentation // not recorded /// 0043473 // pigmentation // inferred from sequence or structural similarity /// 0043525 // positive regulation of neuron apoptosis // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from sequence or structural similarity /// 0043535 // regulation of blood vessel endothelial cell migration // not recorded /// 0045124 // regulation of bone resorption // not recorded /// 0045124 // regulation of bone resorption // inferred from sequence or structural similarity /// 0045664 // regulation of neuron differentiation // inferred from mutant phenotype /// 0045671 // negative regulation of osteoclast differentiation // not recorded /// 0045685 // regulation of glial cell differentiation // not recorded /// 0045685 // regulation of glial cell differentiation // inferred from sequence or structural similarity /// 0045762 // positive regulation of adenylate cyclase activity // not recorded /// 0045762 // positive regulation of adenylate cyclase activity // inferred from sequence or structural similarity /// 0045765 // regulation of angiogenesis // not recorded /// 0045765 // regulation of angiogenesis // inferred from sequence or structural similarity /// 0046580 // negative regulation of Ras protein signal transduction // not recorded /// 0046929 // negative regulation of neurotransmitter secretion // not recorded /// 0048169 // regulation of long-term neuronal synaptic plasticity // not recorded /// 0048485 // sympathetic nervous system development // not recorded /// 0048485 // sympathetic nervous system development // inferred from sequence or structural similarity /// 0048593 // camera-type eye morphogenesis // not recorded /// 0048593 // camera-type eye morphogenesis // inferred from sequence or structural similarity /// 0048712 // negative regulation of astrocyte differentiation // not recorded /// 0048715 // negative regulation of oligodendrocyte differentiation // not recorded /// 0048715 // negative regulation of oligodendrocyte differentiation // inferred from sequence or structural similarity /// 0048745 // smooth muscle tissue development // not recorded /// 0048745 // smooth muscle tissue development // inferred from sequence or structural similarity /// 0048844 // artery morphogenesis // not recorded /// 0048844 // artery morphogenesis // inferred from sequence or structural similarity /// 0048853 // forebrain morphogenesis // not recorded /// 0048853 // forebrain morphogenesis // inferred from sequence or structural similarity /// 0050890 // cognition // not recorded /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0019717 // synaptosome // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0030424 // axon // not recorded /// 0030425 // dendrite // inferred from direct assay /// 0030425 // dendrite // not recorded /// 0043234 // protein complex // inferred from direct assay 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // not recorded /// 0005099 // Ras GTPase activator activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // inferred from direct assay /// 0045545 // syndecan binding // inferred from physical interaction 1392823_at AI146105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146105 /DB_XREF=gi:3667904 /DB_XREF=UI-R-BT0-qh-a-01-0-UI.s1 /CLONE=UI-R-BT0-qh-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.28735.1 /TIER=ConsEnd /STK=1 /UG=Rn.28735 /UG_TITLE=ESTs AI146105 small nucleolar RNA host gene 11 Snhg11 362256 XM_001068561 /// XM_347038 1392824_at BF417701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417701 /DB_XREF=gi:11405690 /DB_XREF=UI-R-CN0-blr-b-05-0-UI.s1 /CLONE=UI-R-CN0-blr-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.72255.1 /TIER=ConsEnd /STK=1 /UG=Rn.72255 /UG_TITLE=ESTs BF417701 BCL2/adenovirus E1B 19kD interacting protein like Bnipl 361994 NM_001128187 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0040009 // regulation of growth rate // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation 1392825_at AA923852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA923852 /DB_XREF=gi:4233944 /DB_XREF=UI-R-A1-dr-g-01-0-UI.s1 /CLONE=UI-R-A1-dr-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.15230.1 /TIER=ConsEnd /STK=1 /UG=Rn.15230 /UG_TITLE=ESTs AA923852 RGD1559600 RGD1559600 499256 NM_001109153 1392826_at AW921174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921174 /DB_XREF=gi:8086995 /DB_XREF=EST352478 /CLONE=RGIHP26 /FEA=EST /CNT=2 /TID=Rn.42266.1 /TIER=ConsEnd /STK=1 /UG=Rn.42266 /UG_TITLE=ESTs, Weakly similar to A54879 pregnancy-specific glycoprotein rnCGM3 - rat (R.norvegicus) AW921174 pregnancy-specific beta 1-glycoprotein Psgb1 59313 NM_021677 0007565 // female pregnancy // inferred from electronic annotation 1392827_at AW521704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521704 /DB_XREF=gi:7164089 /DB_XREF=UI-R-BO0-ags-g-10-0-UI.s1 /CLONE=UI-R-BO0-ags-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.45228.1 /TIER=ConsEnd /STK=1 /UG=Rn.45228 /UG_TITLE=ESTs AW521704 transmembrane protein 126B Tmem126b 293114 NM_001106280 0016021 // integral to membrane // inferred from electronic annotation 1392828_at BI283139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283139 /DB_XREF=gi:14934588 /DB_XREF=UI-R-CU0s-cca-e-02-0-UI.s1 /CLONE=UI-R-CU0s-cca-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.78344.1 /TIER=ConsEnd /STK=1 /UG=Rn.78344 /UG_TITLE=ESTs, Highly similar to A26892 Mopa box protein - mouse (M.musculus) BI283139 mediator complex subunit 12 Med12 679693 NM_001193292 /// XM_001054666 /// XM_002727578 /// XM_002727579 /// XM_002730257 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030518 // steroid hormone receptor signaling pathway // not recorded /// 0030521 // androgen receptor signaling pathway // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005813 // centrosome // not recorded /// 0016592 // mediator complex // inferred from electronic annotation /// 0016592 // mediator complex // not recorded 0003712 // transcription cofactor activity // not recorded /// 0003713 // transcription coactivator activity // not recorded /// 0004872 // receptor activity // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation /// 0016455 // RNA polymerase II transcription mediator activity // not recorded /// 0016563 // transcription activator activity // not recorded /// 0019904 // protein domain specific binding // not recorded /// 0046966 // thyroid hormone receptor binding // not recorded 1392829_at BI289495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289495 /DB_XREF=gi:14947125 /DB_XREF=UI-R-DK0-cfh-g-04-0-UI.s1 /CLONE=UI-R-DK0-cfh-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.28229.2 /TIER=ConsEnd /STK=1 /UG=Rn.28229 /UG_TITLE=ESTs, Highly similar to A40220 cleavage stimulation factor 64K chain (H.sapiens) BI289495 cleavage stimulation factor, 3' pre-RNA subunit 2 Cstf2 683927 NM_001131014 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1392830_at BF396625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396625 /DB_XREF=gi:11381600 /DB_XREF=UI-R-BS2-bea-c-07-0-UI.s1 /CLONE=UI-R-BS2-bea-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.8629.2 /TIER=ConsEnd /STK=1 /UG=Rn.8629 /UG_TITLE=ESTs, Highly similar to CHD1 MOUSE CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 (M.musculus) BF396625 chromodomain helicase DNA binding protein 1 Chd1 308215 NM_001107465 0006333 // chromatin assembly or disassembly // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1392831_at AA891438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891438 /DB_XREF=gi:3018317 /DB_XREF=EST195241 /CLONE=RHEAU25 /FEA=EST /CNT=2 /TID=Rn.22406.2 /TIER=ConsEnd /STK=1 /UG=Rn.22406 /UG_TITLE=ESTs, Weakly similar to C42D8.3.p (Caenorhabditis elegans) (C.elegans) AA891438 Pantothenate kinase 2 (Hallervorden-Spatz syndrome) Pank2 296167 NM_001106513 0015937 // coenzyme A biosynthetic process // inferred from electronic annotation 0004594 // pantothenate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1392832_at AA926180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926180 /DB_XREF=gi:4237371 /DB_XREF=UI-R-A1-ev-g-01-0-UI.s1 /CLONE=UI-R-A1-ev-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.14363.1 /TIER=ConsEnd /STK=1 /UG=Rn.14363 /UG_TITLE=ESTs, Weakly similar to FIBB RAT FIBRINOGEN BETA CHAIN PRECURSOR (R.norvegicus) AA926180 angiopoietin-like 1 Angptl1 679942 NM_001109383 0007165 // signal transduction // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation 1392833_at BF289062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289062 /DB_XREF=gi:11220132 /DB_XREF=EST453653 /CLONE=RGIHA74 /FEA=EST /CNT=2 /TID=Rn.37283.1 /TIER=ConsEnd /STK=1 /UG=Rn.37283 /UG_TITLE=ESTs BF289062 1392834_at BF413486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413486 /DB_XREF=gi:11401475 /DB_XREF=UI-R-BT1-bob-g-04-0-UI.s1 /CLONE=UI-R-BT1-bob-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.62357.1 /TIER=ConsEnd /STK=1 /UG=Rn.62357 /UG_TITLE=ESTs BF413486 similar to Chromodomain-helicase-DNA-binding protein 1 (CHD-1) RGD1310166 303395 XM_001081077 /// XM_220804 1392835_at AI705060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI705060 /DB_XREF=gi:4992960 /DB_XREF=UI-R-G0-uj-f-01-0-UI.s2 /CLONE=UI-R-G0-uj-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.40934.1 /TIER=ConsEnd /STK=1 /UG=Rn.40934 /UG_TITLE=ESTs AI705060 zinc finger protein 68 Zfp68 304337 NM_001107128 /// NM_001142945 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392836_at AI044295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044295 /DB_XREF=gi:3291198 /DB_XREF=UI-R-C1-kb-h-05-0-UI.s2 /CLONE=UI-R-C1-kb-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.15864.1 /TIER=ConsEnd /STK=1 /UG=Rn.15864 /UG_TITLE=ESTs, Highly similar to I49257 NF2d9 - mouse (M.musculus) AI044295 1392837_at AA859108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859108 /DB_XREF=gi:4229376 /DB_XREF=UI-R-A0-ac-c-03-0-UI.s2 /CLONE=UI-R-A0-ac-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.40547.1 /TIER=ConsEnd /STK=1 /UG=Rn.40547 /UG_TITLE=ESTs AA859108 1392838_at BF398054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398054 /DB_XREF=gi:11383039 /DB_XREF=UI-R-BS2-beg-g-05-0-UI.s1 /CLONE=UI-R-BS2-beg-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.58963.1 /TIER=ConsEnd /STK=1 /UG=Rn.58963 /UG_TITLE=ESTs BF398054 similar to CG13957-PA RGD1309995 314690 XM_001076152 /// XM_235003 0016197 // endosome transport // not recorded 0071203 // WASH complex // not recorded 1392839_at BE114818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114818 /DB_XREF=gi:8506923 /DB_XREF=UI-R-BJ1-awp-f-09-0-UI.s1 /CLONE=UI-R-BJ1-awp-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.48938.1 /TIER=ConsEnd /STK=1 /UG=Rn.48938 /UG_TITLE=ESTs BE114818 Bri3 binding protein Bri3bp 498176 NM_001017487 1392840_at AI764605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764605 /DB_XREF=gi:5210540 /DB_XREF=UI-R-Y0-abv-h-09-0-UI.s2 /CLONE=UI-R-Y0-abv-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.21138.1 /TIER=ConsEnd /STK=1 /UG=Rn.21138 /UG_TITLE=ESTs AI764605 1392841_at AA891751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891751 /DB_XREF=gi:3018630 /DB_XREF=EST195554 /CLONE=RKIAG34 /FEA=EST /CNT=2 /TID=Rn.37544.1 /TIER=ConsEnd /STK=1 /UG=Rn.37544 /UG_TITLE=ESTs, Highly similar to CIN3 RAT SODIUM CHANNEL PROTEIN, BRAIN III ALPHA SUBUNIT (R.norvegicus) AA891751 1392842_at AI072951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072951 /DB_XREF=gi:3399145 /DB_XREF=UI-R-Y0-ly-a-11-0-UI.s1 /CLONE=UI-R-Y0-ly-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.21829.1 /TIER=ConsEnd /STK=1 /UG=Rn.21829 /UG_TITLE=ESTs AI072951 1392843_at AI008432 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008432 /DB_XREF=gi:3222264 /DB_XREF=EST202883 /CLONE=REMAX25 /FEA=EST /CNT=2 /TID=Rn.42155.1 /TIER=ConsEnd /STK=1 /UG=Rn.42155 /UG_TITLE=ESTs AI008432 1392844_at BE119432 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119432 /DB_XREF=gi:8511537 /DB_XREF=UI-R-CA0-bac-f-04-0-UI.s1 /CLONE=UI-R-CA0-bac-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.7874.1 /TIER=ConsEnd /STK=1 /UG=Rn.7874 /UG_TITLE=ESTs BE119432 1392845_at AA892221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892221 /DB_XREF=gi:3019100 /DB_XREF=EST196024 /CLONE=RKIAN84 /FEA=EST /CNT=2 /TID=Rn.28842.1 /TIER=ConsEnd /STK=1 /UG=Rn.28842 /UG_TITLE=ESTs, Weakly similar to RENAL TRANSCRIPTION FACTOR KID-1 (R.norvegicus) AA892221 Zinc finger protein 354B Zfp354b 497898 XM_001072258 /// XM_573083 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392846_at AA944574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944574 /DB_XREF=gi:3104490 /DB_XREF=EST200073 /CLONE=REMAL27 /FEA=EST /CNT=2 /TID=Rn.7757.1 /TIER=ConsEnd /STK=1 /UG=Rn.7757 /UG_TITLE=ESTs AA944574 1392847_at BE118227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118227 /DB_XREF=gi:8510296 /DB_XREF=UI-R-BS1-azj-g-08-0-UI.s1 /CLONE=UI-R-BS1-azj-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.52970.1 /TIER=ConsEnd /STK=1 /UG=Rn.52970 /UG_TITLE=ESTs BE118227 Cas-Br-M (murine) ecotropic retroviral transforming sequence-like 1 Cbll1 314028 NM_001108018 0007162 // negative regulation of cell adhesion // not recorded /// 0016337 // cell-cell adhesion // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0030335 // positive regulation of cell migration // not recorded /// 0045807 // positive regulation of endocytosis // not recorded 0005622 // intracellular // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392848_at AA964141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964141 /DB_XREF=gi:4279017 /DB_XREF=UI-R-E1-gl-f-03-0-UI.s1 /CLONE=UI-R-E1-gl-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.24490.1 /TIER=ConsEnd /STK=1 /UG=Rn.24490 /UG_TITLE=ESTs AA964141 tribbles homolog 1 (Drosophila) Trib1 78969 NM_023985 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0007254 // JNK cascade // inferred from electronic annotation /// 0007254 // JNK cascade // not recorded /// 0014912 // negative regulation of smooth muscle cell migration // inferred from electronic annotation /// 0014912 // negative regulation of smooth muscle cell migration // not recorded /// 0031665 // negative regulation of lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0031665 // negative regulation of lipopolysaccharide-mediated signaling pathway // not recorded /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0043405 // regulation of MAP kinase activity // inferred from electronic annotation /// 0043405 // regulation of MAP kinase activity // not recorded /// 0043433 // negative regulation of transcription factor activity // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048662 // negative regulation of smooth muscle cell proliferation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004672 // protein kinase activity // inferred from electronic annotation /// 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0004860 // protein kinase inhibitor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0031434 // mitogen-activated protein kinase kinase binding // inferred from electronic annotation /// 0031434 // mitogen-activated protein kinase kinase binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0055106 // ubiquitin-protein ligase regulator activity // inferred from electronic annotation /// 0055106 // ubiquitin-protein ligase regulator activity // not recorded 1392849_at AI044509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044509 /DB_XREF=gi:3291370 /DB_XREF=UI-R-C1-kc-a-08-0-UI.s1 /CLONE=UI-R-C1-kc-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.15930.1 /TIER=ConsEnd /STK=1 /UG=Rn.15930 /UG_TITLE=ESTs AI044509 1392850_at AA900949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900949 /DB_XREF=gi:4233445 /DB_XREF=UI-R-E0-dj-d-11-0-UI.s1 /CLONE=UI-R-E0-dj-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.22946.1 /TIER=ConsEnd /STK=1 /UG=Rn.22946 /UG_TITLE=ESTs AA900949 1392851_at AI146048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146048 /DB_XREF=gi:3667847 /DB_XREF=UI-R-BT0-qg-d-11-0-UI.s1 /CLONE=UI-R-BT0-qg-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.28713.1 /TIER=ConsEnd /STK=1 /UG=Rn.28713 /UG_TITLE=ESTs AI146048 peroxisomal biogenesis factor 26 Pex26 297570 NM_001106618 0016558 // protein import into peroxisome matrix // not recorded /// 0045046 // protein import into peroxisome membrane // inferred from electronic annotation 0005777 // peroxisome // not recorded /// 0005779 // integral to peroxisomal membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0032403 // protein complex binding // not recorded 1392852_at AI175880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175880 /DB_XREF=gi:3726518 /DB_XREF=EST219451 /CLONE=ROVBG65 /FEA=EST /CNT=2 /TID=Rn.55639.1 /TIER=ConsEnd /STK=1 /UG=Rn.55639 /UG_TITLE=ESTs AI175880 1392853_at BF417654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417654 /DB_XREF=gi:11405643 /DB_XREF=UI-R-CN0-blq-f-05-0-UI.s1 /CLONE=UI-R-CN0-blq-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.63236.1 /TIER=ConsEnd /STK=1 /UG=Rn.63236 /UG_TITLE=ESTs BF417654 1392854_at BE116127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116127 /DB_XREF=gi:8508232 /DB_XREF=UI-R-BS1-axz-g-03-0-UI.s1 /CLONE=UI-R-BS1-axz-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.27970.1 /TIER=ConsEnd /STK=1 /UG=Rn.27970 /UG_TITLE=ESTs BE116127 Similar to RCK RGD1564560 500988 NM_001109292 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1392855_x_at AI711306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711306 /DB_XREF=gi:5001082 /DB_XREF=UI-R-AA1-zv-e-11-0-UI.s1 /CLONE=UI-R-AA1-zv-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.40785.1 /TIER=ConsEnd /STK=1 /UG=Rn.40785 /UG_TITLE=ESTs, Highly similar to S06147 GTP-binding protein rab1B - rat (R.norvegicus) AI711306 RAB1B, member RAS oncogene family Rab1b 100126191 NM_001109979 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1392856_at AI549470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549470 /DB_XREF=gi:4466958 /DB_XREF=UI-R-C3-tu-c-02-0-UI.s1 /CLONE=UI-R-C3-tu-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.42018.1 /TIER=ConsEnd /STK=1 /UG=Rn.42018 /UG_TITLE=ESTs, Weakly similar to S78710 protein YDL085c-a - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AI549470 small EDRK-rich factor 1 Serf1 502503 XM_001070716 /// XM_577983 1392857_at BG381246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381246 /DB_XREF=gi:13305718 /DB_XREF=UI-R-CT0-buh-h-10-0-UI.s1 /CLONE=UI-R-CT0-buh-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.66806.1 /TIER=ConsEnd /STK=1 /UG=Rn.66806 /UG_TITLE=ESTs, Weakly similar to TC17 RAT TRANSCRIPTION FACTOR 17 (R.norvegicus) BG381246 zinc finger and SCAN domain containing 20 Zscan20 500549 XM_001059988 /// XM_575911 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392858_at BM387770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387770 /DB_XREF=gi:18187823 /DB_XREF=UI-R-CN1-cjk-e-06-0-UI.s1 /CLONE=UI-R-CN1-cjk-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.82073.1 /TIER=ConsEnd /STK=1 /UG=Rn.82073 /UG_TITLE=ESTs BM387770 phosphatidylinositol glycan anchor biosynthesis, class Z Pigz 689116 NM_001109525 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from electronic annotation /// 0006370 // mRNA capping // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006408 // snRNA export from nucleus // inferred from sequence or structural similarity /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // inferred from electronic annotation /// 0006506 // GPI anchor biosynthetic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from sequence or structural similarity /// 0008380 // RNA splicing // inferred from electronic annotation /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0046833 // positive regulation of RNA export from nucleus // inferred from sequence or structural similarity /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005845 // mRNA cap binding complex // inferred from electronic annotation 0000026 // alpha-1,2-mannosyltransferase activity // not recorded /// 0000030 // mannosyltransferase activity // not recorded /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0000340 // RNA 7-methylguanosine cap binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1392859_at AA956344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956344 /DB_XREF=gi:4238775 /DB_XREF=UI-R-E1-fj-c-07-0-UI.s1 /CLONE=UI-R-E1-fj-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.9624.1 /TIER=ConsEnd /STK=1 /UG=Rn.9624 /UG_TITLE=ESTs AA956344 1392860_at AI045117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045117 /DB_XREF=gi:3291936 /DB_XREF=UI-R-C1-kg-d-01-0-UI.s1 /CLONE=UI-R-C1-kg-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.20845.1 /TIER=ConsEnd /STK=1 /UG=Rn.20845 /UG_TITLE=ESTs AI045117 1392861_at BG373422 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373422 /DB_XREF=gi:13269999 /DB_XREF=UI-R-CS0-bsd-a-10-0-UI.s1 /CLONE=UI-R-CS0-bsd-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.8902.1 /TIER=ConsEnd /STK=1 /UG=Rn.8902 /UG_TITLE=ESTs BG373422 1392862_at AA859389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859389 /DB_XREF=gi:4229736 /DB_XREF=UI-R-E0-bt-c-01-0-UI.s1 /CLONE=UI-R-E0-bt-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.24818.2 /TIER=ConsEnd /STK=1 /UG=Rn.24818 /UG_TITLE=ESTs AA859389 1392863_at AA817953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817953 /DB_XREF=gi:4198476 /DB_XREF=UI-R-A0-ag-f-01-0-UI.s1 /CLONE=UI-R-A0-ag-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.37538.3 /TIER=ConsEnd /STK=1 /UG=Rn.37538 /UG_TITLE=ESTs AA817953 1392864_at BM384008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384008 /DB_XREF=gi:18184061 /DB_XREF=UI-R-DM1-ckb-e-10-0-UI.s1 /CLONE=UI-R-DM1-ckb-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.81246.1 /TIER=ConsEnd /STK=1 /UG=Rn.81246 /UG_TITLE=ESTs, Weakly similar to A38218 GAP-associated protein p190 - rat (R.norvegicus) BM384008 Rho GTPase activating protein 5 Arhgap5 299012 NM_001047869 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008361 // regulation of cell size // not recorded /// 0030335 // positive regulation of cell migration // not recorded /// 0030879 // mammary gland development // inferred from expression pattern /// 0030879 // mammary gland development // not recorded 0005622 // intracellular // inferred from electronic annotation 0005525 // GTP binding // inferred from electronic annotation /// 0042169 // SH2 domain binding // not recorded 1392865_at BG371594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371594 /DB_XREF=gi:13268131 /DB_XREF=UI-R-CW0-bvx-c-10-0-UI.s1 /CLONE=UI-R-CW0-bvx-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.49366.1 /TIER=ConsEnd /STK=1 /UG=Rn.49366 /UG_TITLE=ESTs BG371594 fibroblast growth factor 9 Fgf9 25444 NM_012952 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0002062 // chondrocyte differentiation // inferred from electronic annotation /// 0002062 // chondrocyte differentiation // not recorded /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006606 // protein import into nucleus // not recorded /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from direct assay /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from electronic annotation /// 0008584 // male gonad development // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030238 // male sex determination // inferred from electronic annotation /// 0030238 // male sex determination // not recorded /// 0030324 // lung development // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // inferred from electronic annotation /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from genetic interaction /// 0045880 // positive regulation of smoothened signaling pathway // inferred from electronic annotation /// 0045880 // positive regulation of smoothened signaling pathway // not recorded /// 0048505 // regulation of timing of cell differentiation // inferred from electronic annotation /// 0048505 // regulation of timing of cell differentiation // not recorded /// 0048566 // embryonic digestive tract development // inferred from electronic annotation /// 0048566 // embryonic digestive tract development // not recorded /// 0048706 // embryonic skeletal system development // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from electronic annotation /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0060045 // positive regulation of cardiac muscle cell proliferation // inferred from electronic annotation /// 0060045 // positive regulation of cardiac muscle cell proliferation // not recorded /// 0060484 // lung-associated mesenchyme development // inferred from electronic annotation /// 0060484 // lung-associated mesenchyme development // not recorded /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005604 // basement membrane // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from direct assay 0005104 // fibroblast growth factor receptor binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation 1392866_at AI044609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044609 /DB_XREF=gi:3291470 /DB_XREF=UI-R-C1-kc-c-04-0-UI.s1 /CLONE=UI-R-C1-kc-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.20780.1 /TIER=ConsEnd /STK=1 /UG=Rn.20780 /UG_TITLE=ESTs AI044609 1392867_at AA956057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956057 /DB_XREF=gi:4238451 /DB_XREF=UI-R-E1-fe-d-12-0-UI.s1 /CLONE=UI-R-E1-fe-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.23123.1 /TIER=ConsEnd /STK=1 /UG=Rn.23123 /UG_TITLE=ESTs AA956057 1392868_at AA859495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859495 /DB_XREF=gi:4230041 /DB_XREF=UI-R-E0-bv-g-07-0-UI.s1 /CLONE=UI-R-E0-bv-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.65702.1 /TIER=ConsEnd /STK=1 /UG=Rn.65702 /UG_TITLE=ESTs, Weakly similar to TLS-associated protein TASR-2 (M.musculus) AA859495 1392869_at AI111868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111868 /DB_XREF=gi:3511817 /DB_XREF=UI-R-Y0-mp-g-01-0-UI.s1 /CLONE=UI-R-Y0-mp-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.26664.1 /TIER=ConsEnd /STK=1 /UG=Rn.26664 /UG_TITLE=ESTs AI111868 1392870_at AI406729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406729 /DB_XREF=gi:4250233 /DB_XREF=EST235016 /CLONE=ROVDW05 /FEA=EST /CNT=2 /TID=Rn.64764.1 /TIER=ConsEnd /STK=1 /UG=Rn.64764 /UG_TITLE=ESTs AI406729 1392871_at BM392092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392092 /DB_XREF=gi:18192145 /DB_XREF=UI-R-DO1-ckp-k-05-0-UI.s1 /CLONE=UI-R-DO1-ckp-k-05-0-UI /FEA=EST /CNT=2 /TID=Rn.82670.1 /TIER=ConsEnd /STK=1 /UG=Rn.82670 /UG_TITLE=ESTs BM392092 1392872_at BF397413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397413 /DB_XREF=gi:11382396 /DB_XREF=UI-R-BS2-bel-a-09-0-UI.s1 /CLONE=UI-R-BS2-bel-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.58816.1 /TIER=ConsEnd /STK=1 /UG=Rn.58816 /UG_TITLE=ESTs BF397413 1392873_at AA957014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957014 /DB_XREF=gi:4239487 /DB_XREF=UI-R-E1-fs-b-10-0-UI.s1 /CLONE=UI-R-E1-fs-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.22988.1 /TIER=ConsEnd /STK=1 /UG=Rn.22988 /UG_TITLE=ESTs AA957014 1392874_at AI172451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172451 /DB_XREF=gi:3712491 /DB_XREF=EST218461 /CLONE=RMUCA03 /FEA=EST /CNT=2 /TID=Rn.44599.1 /TIER=ConsEnd /STK=1 /UG=Rn.44599 /UG_TITLE=ESTs AI172451 1392875_at AA964134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964134 /DB_XREF=gi:4279010 /DB_XREF=UI-R-E1-gl-e-06-0-UI.s1 /CLONE=UI-R-E1-gl-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.11714.1 /TIER=ConsEnd /STK=1 /UG=Rn.11714 /UG_TITLE=ESTs AA964134 F-box and leucine-rich repeat protein 4 Fbxl4 313101 NM_001107919 1392876_at BG375098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375098 /DB_XREF=gi:13299570 /DB_XREF=UI-R-CV1-bsx-b-01-0-UI.s1 /CLONE=UI-R-CV1-bsx-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.66284.1 /TIER=ConsEnd /STK=1 /UG=Rn.66284 /UG_TITLE=ESTs BG375098 RAB11 family interacting protein 1 (class I) Rab11fip1 498650 NM_001191555 /// NM_001197241 /// XM_001070627 /// XM_002728427 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from electronic annotation 0005515 // protein binding // not recorded 1392877_at AA859524 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859524 /DB_XREF=gi:4230070 /DB_XREF=UI-R-E0-br-b-07-0-UI.s1 /CLONE=UI-R-E0-br-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.251.1 /TIER=ConsEnd /STK=1 /UG=Rn.251 /UG_TITLE=ESTs AA859524 1392878_at AI231319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231319 /DB_XREF=gi:3815199 /DB_XREF=EST228007 /CLONE=REMDI54 /FEA=EST /CNT=2 /TID=Rn.33662.1 /TIER=ConsEnd /STK=1 /UG=Rn.33662 /UG_TITLE=ESTs AI231319 1392879_at AA946069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946069 /DB_XREF=gi:3105985 /DB_XREF=EST201568 /CLONE=RLUBA87 /FEA=EST /CNT=2 /TID=Rn.54629.1 /TIER=ConsEnd /STK=1 /UG=Rn.54629 /UG_TITLE=ESTs, Weakly similar to MOT2 RAT MONOCARBOXYLATE TRANSPORTER 2 (R.norvegicus) AA946069 1392880_at BG665051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665051 /DB_XREF=gi:13886973 /DB_XREF=DRABXF10 /CLONE=DRABXF10 /FEA=EST /CNT=2 /TID=Rn.34582.1 /TIER=ConsEnd /STK=1 /UG=Rn.34582 /UG_TITLE=ESTs BG665051 1392881_at BF289499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289499 /DB_XREF=gi:11220569 /DB_XREF=EST454090 /CLONE=RGIHH92 /FEA=EST /CNT=2 /TID=Rn.55783.1 /TIER=ConsEnd /STK=1 /UG=Rn.55783 /UG_TITLE=ESTs, Weakly similar to sialyltransferase 3; sialyltransferase (N-acetyllacosaminide alpha 2,3-sialyltransferase) (Rattus norvegicus) (R.norvegicus) BF289499 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 St3gal4 363040 NM_203337 0006486 // protein glycosylation // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008373 // sialyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0047288 // monosialoganglioside sialyltransferase activity // inferred from direct assay 1392882_at BF391198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391198 /DB_XREF=gi:11376046 /DB_XREF=UI-R-CA1-bcq-e-04-0-UI.s1 /CLONE=UI-R-CA1-bcq-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.57428.1 /TIER=ConsEnd /STK=1 /UG=Rn.57428 /UG_TITLE=ESTs BF391198 similar to KIAA1841 protein RGD1305110 305579 NM_001100971 1392883_at AI013730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013730 /DB_XREF=gi:4133904 /DB_XREF=EST208405 /CLONE=RSPBS18 /FEA=EST /CNT=2 /TID=Rn.18032.1 /TIER=ConsEnd /STK=1 /UG=Rn.18032 /UG_TITLE=ESTs AI013730 LIM and calponin homology domains 1 Limch1 305332 NM_001191678 /// XM_001077838 /// XM_002724963 /// XM_002724964 /// XM_002724965 /// XM_002728102 /// XM_002728103 /// XM_002728104 /// XM_223397 0031032 // actomyosin structure organization // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392884_at AI172267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172267 /DB_XREF=gi:4134731 /DB_XREF=EST218268 /CLONE=RMUBX14 /FEA=EST /CNT=13 /TID=Rn.19986.1 /TIER=ConsEnd /STK=0 /UG=Rn.19986 /UG_TITLE=ESTs AI172267 1392885_at BF281957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281957 /DB_XREF=gi:11213027 /DB_XREF=EST446548 /CLONE=RGIDA07 /FEA=EST /CNT=13 /TID=Rn.3310.1 /TIER=ConsEnd /STK=0 /UG=Rn.3310 /UG_TITLE=ESTs, Moderately similar to methyl-CpG binding protein MBD1 (M.musculus) BF281957 methyl-CpG binding domain protein 1 Mbd1 291439 NM_001011924 0000785 // chromatin // not recorded /// 0000785 // chromatin // inferred from electronic annotation /// 0000792 // heterochromatin // inferred from electronic annotation /// 0000792 // heterochromatin // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0005932 // microtubule basal body // inferred from electronic annotation /// 0035085 // cilium axoneme // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1392886_a_at AI453967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI453967 /DB_XREF=gi:4290429 /DB_XREF=UI-R-A0-ad-c-10-0-UI.s1 /CLONE=UI-R-A0-ad-c-10-0-UI /FEA=EST /CNT=13 /TID=Rn.1098.2 /TIER=ConsEnd /STK=0 /UG=Rn.1098 /UG_TITLE=ESTs AI453967 Fc receptor-like A Fcrla 304965 NM_001100682 0030154 // cell differentiation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1392887_at AI575082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575082 /DB_XREF=gi:4559458 /DB_XREF=UI-R-G0-ul-b-10-0-UI.s1 /CLONE=UI-R-G0-ul-b-10-0-UI /FEA=EST /CNT=12 /TID=Rn.3617.1 /TIER=ConsEnd /STK=0 /UG=Rn.3617 /UG_TITLE=ESTs AI575082 1392888_at AI071251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071251 /DB_XREF=gi:3397466 /DB_XREF=UI-R-C2-nb-e-05-0-UI.s1 /CLONE=UI-R-C2-nb-e-05-0-UI /FEA=EST /CNT=11 /TID=Rn.19945.1 /TIER=ConsEnd /STK=0 /UG=Rn.19945 /UG_TITLE=ESTs AI071251 glypican 4 Gpc4 317322 NM_001014108 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005626 // insoluble fraction // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0043395 // heparan sulfate proteoglycan binding // inferred from electronic annotation 1392889_at AI112294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112294 /DB_XREF=gi:3512243 /DB_XREF=UI-R-Y0-mo-g-08-0-UI.s2 /CLONE=UI-R-Y0-mo-g-08-0-UI /FEA=EST /CNT=11 /TID=Rn.40320.1 /TIER=ConsEnd /STK=0 /UG=Rn.40320 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) AI112294 1392890_at BG663460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663460 /DB_XREF=gi:13885382 /DB_XREF=DRAAAJD01 /CLONE=DRAAAJD01 /FEA=EST /CNT=16 /TID=Rn.17047.1 /TIER=ConsEnd /STK=0 /UG=Rn.17047 /UG_TITLE=ESTs BG663460 platelet-activating factor acetylhydrolase, isoform 1b, subunit 1 Pafah1b1 83572 NM_031763 0000132 // establishment of mitotic spindle orientation // inferred from electronic annotation /// 0000132 // establishment of mitotic spindle orientation // not recorded /// 0000226 // microtubule cytoskeleton organization // not recorded /// 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0001675 // acrosome assembly // inferred from electronic annotation /// 0001675 // acrosome assembly // not recorded /// 0001764 // neuron migration // inferred from mutant phenotype /// 0001764 // neuron migration // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007017 // microtubule-based process // not recorded /// 0007017 // microtubule-based process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007097 // nuclear migration // inferred from mutant phenotype /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007405 // neuroblast proliferation // inferred from electronic annotation /// 0007405 // neuroblast proliferation // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0007611 // learning or memory // inferred from electronic annotation /// 0007611 // learning or memory // not recorded /// 0008090 // retrograde axon cargo transport // inferred from electronic annotation /// 0008090 // retrograde axon cargo transport // not recorded /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0010977 // negative regulation of neuron projection development // inferred from mutant phenotype /// 0016042 // lipid catabolic process // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0017145 // stem cell division // inferred from mutant phenotype /// 0019226 // transmission of nerve impulse // not recorded /// 0019226 // transmission of nerve impulse // inferred from electronic annotation /// 0021540 // corpus callosum morphogenesis // inferred from electronic annotation /// 0021540 // corpus callosum morphogenesis // not recorded /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0021819 // layer formation in cerebral cortex // inferred from electronic annotation /// 0021819 // layer formation in cerebral cortex // not recorded /// 0021895 // cerebral cortex neuron differentiation // inferred from mutant phenotype /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0021987 // cerebral cortex development // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031023 // microtubule organizing center organization // inferred from electronic annotation /// 0031023 // microtubule organizing center organization // not recorded /// 0032319 // regulation of Rho GTPase activity // inferred from electronic annotation /// 0032319 // regulation of Rho GTPase activity // not recorded /// 0045773 // positive regulation of axon extension // inferred from mutant phenotype /// 0045931 // positive regulation of mitotic cell cycle // inferred from mutant phenotype /// 0047496 // vesicle transport along microtubule // inferred from electronic annotation /// 0047496 // vesicle transport along microtubule // not recorded /// 0048854 // brain morphogenesis // inferred from electronic annotation /// 0048854 // brain morphogenesis // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0051081 // nuclear envelope disassembly // inferred from electronic annotation /// 0051081 // nuclear envelope disassembly // not recorded /// 0051301 // cell division // inferred from electronic annotation /// 0051660 // establishment of centrosome localization // inferred from mutant phenotype /// 0071445 // cellular response to protein stimulus // inferred from expression pattern 0000235 // astral microtubule // inferred from electronic annotation /// 0000235 // astral microtubule // not recorded /// 0000776 // kinetochore // inferred from electronic annotation /// 0000776 // kinetochore // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay /// 0005635 // nuclear envelope // not recorded /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005871 // kinesin complex // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // not recorded /// 0005875 // microtubule associated complex // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0015630 // microtubule cytoskeleton // not recorded /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030426 // growth cone // inferred from direct assay /// 0031252 // cell leading edge // inferred from electronic annotation /// 0031252 // cell leading edge // not recorded /// 0031512 // motile primary cilium // inferred from electronic annotation /// 0031512 // motile primary cilium // not recorded /// 0031513 // nonmotile primary cilium // not recorded /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0033267 // axon part // inferred from direct assay /// 0042598 // vesicular fraction // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0045502 // dynein binding // not recorded /// 0045502 // dynein binding // inferred from electronic annotation /// 0045505 // dynein intermediate chain binding // inferred from direct assay /// 0047179 // platelet-activating factor acetyltransferase activity // traceable author statement /// 0051219 // phosphoprotein binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // not recorded 1392891_at AW535812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535812 /DB_XREF=gi:7178221 /DB_XREF=UI-R-BV0p-aoi-d-06-0-UI.s1 /CLONE=UI-R-BV0p-aoi-d-06-0-UI /FEA=EST /CNT=12 /TID=Rn.20598.1 /TIER=ConsEnd /STK=0 /UG=Rn.20598 /UG_TITLE=ESTs AW535812 PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae) Pds5b 304218 NM_001101805 /// NM_001102383 0007049 // cell cycle // inferred from electronic annotation /// 0007064 // mitotic sister chromatid cohesion // not recorded /// 0007064 // mitotic sister chromatid cohesion // inferred from sequence or structural similarity /// 0007067 // mitosis // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0051301 // cell division // inferred from electronic annotation 0000785 // chromatin // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1392892_at AA955814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955814 /DB_XREF=gi:4238209 /DB_XREF=UI-R-E1-fd-e-06-0-UI.s1 /CLONE=UI-R-E1-fd-e-06-0-UI /FEA=EST /CNT=12 /TID=Rn.18243.1 /TIER=ConsEnd /STK=0 /UG=Rn.18243 /UG_TITLE=ESTs, Highly similar to ME18 MOUSE DNA-BINDING PROTEIN MEL-18 (M.musculus) AA955814 polycomb group ring finger 2 Pcgf2 287662 NM_001105836 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0016573 // histone acetylation // inferred from electronic annotation /// 0016573 // histone acetylation // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048706 // embryonic skeletal system development // not recorded /// 0048706 // embryonic skeletal system development // inferred from electronic annotation 0001739 // sex chromatin // inferred from electronic annotation /// 0001739 // sex chromatin // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016604 // nuclear body // inferred from electronic annotation /// 0016604 // nuclear body // not recorded /// 0031519 // PcG protein complex // inferred from electronic annotation /// 0031519 // PcG protein complex // not recorded 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392893_a_at AA926239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926239 /DB_XREF=gi:4237430 /DB_XREF=UI-R-A1-eq-d-05-0-UI.s1 /CLONE=UI-R-A1-eq-d-05-0-UI /FEA=EST /CNT=11 /TID=Rn.15689.2 /TIER=ConsEnd /STK=0 /UG=Rn.15689 /UG_TITLE=ESTs AA926239 1392894_at AI716194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716194 /DB_XREF=gi:5033447 /DB_XREF=UI-R-Y0-abl-f-05-0-UI.s2 /CLONE=UI-R-Y0-abl-f-05-0-UI /FEA=EST /CNT=11 /TID=Rn.20323.1 /TIER=ConsEnd /STK=0 /UG=Rn.20323 /UG_TITLE=ESTs AI716194 fibrinogen-like 2 Fgl2 84586 NM_053455 0007165 // signal transduction // inferred from electronic annotation /// 0007567 // parturition // traceable author statement 0005615 // extracellular space // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0008233 // peptidase activity // traceable author statement 1392895_at BE101114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101114 /DB_XREF=gi:8493022 /DB_XREF=UI-R-BJ1-auh-c-06-0-UI.s1 /CLONE=UI-R-BJ1-auh-c-06-0-UI /FEA=EST /CNT=10 /TID=Rn.33158.1 /TIER=ConsEnd /STK=0 /UG=Rn.33158 /UG_TITLE=ESTs BE101114 1392896_at AI111675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111675 /DB_XREF=gi:3511624 /DB_XREF=UI-R-Y0-mk-g-08-0-UI.s1 /CLONE=UI-R-Y0-mk-g-08-0-UI /FEA=EST /CNT=10 /TID=Rn.22156.1 /TIER=ConsEnd /STK=0 /UG=Rn.22156 /UG_TITLE=ESTs AI111675 1392897_at AA924586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924586 /DB_XREF=gi:4235777 /DB_XREF=UI-R-A1-ea-e-10-0-UI.s1 /CLONE=UI-R-A1-ea-e-10-0-UI /FEA=EST /CNT=10 /TID=Rn.4019.1 /TIER=ConsEnd /STK=0 /UG=Rn.4019 /UG_TITLE=ESTs AA924586 1392898_at AF011367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF011367 /DB_XREF=gi:2318018 /DB_XREF=AF011367 /CLONE=YG82 /FEA=EST /CNT=14 /TID=Rn.25071.1 /TIER=ConsEnd /STK=0 /UG=Rn.25071 /UG_TITLE=ESTs AF011367 1392899_at BI284262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284262 /DB_XREF=gi:14936782 /DB_XREF=UI-R-CX0s-ccq-a-11-0-UI.s1 /CLONE=UI-R-CX0s-ccq-a-11-0-UI /FEA=EST /CNT=12 /TID=Rn.12343.1 /TIER=ConsEnd /STK=0 /UG=Rn.12343 /UG_TITLE=ESTs BI284262 protein regulator of cytokinesis 1 Prc1 308761 NM_001107529 0005515 // protein binding // not recorded 1392900_at AW888327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW888327 /DB_XREF=gi:8052473 /DB_XREF=E7 /FEA=EST /CNT=12 /TID=Rn.13838.1 /TIER=ConsEnd /STK=0 /UG=Rn.13838 /UG_TITLE=ESTs AW888327 capping protein (actin filament) muscle Z-line, alpha 1 Capza1 691149 NM_001109625 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0051693 // actin filament capping // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0008290 // F-actin capping protein complex // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0030863 // cortical cytoskeleton // not recorded /// 0071203 // WASH complex // not recorded /// 0071203 // WASH complex // inferred from sequence or structural similarity 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392901_at BM385213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385213 /DB_XREF=gi:18185266 /DB_XREF=UI-R-CN1-cjs-l-04-0-UI.s2 /CLONE=UI-R-CN1-cjs-l-04-0-UI /FEA=EST /CNT=11 /TID=Rn.15622.1 /TIER=ConsEnd /STK=0 /UG=Rn.15622 /UG_TITLE=ESTs BM385213 Leucine rich repeat containing 1 Lrrc1 367113 NM_001014268 0005515 // protein binding // inferred from electronic annotation 1392902_at AW141642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141642 /DB_XREF=gi:6161459 /DB_XREF=EST291715 /CLONE=RGICB76 /FEA=EST /CNT=11 /TID=Rn.22208.1 /TIER=ConsEnd /STK=0 /UG=Rn.22208 /UG_TITLE=ESTs, Weakly similar to T13618 hypothetical protein EG:8D8.4 - fruit fly (D.melanogaster) AW141642 ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) Esf1 366203 NM_001100771 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 1392903_at BG665185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665185 /DB_XREF=gi:13887107 /DB_XREF=DRABZF03 /CLONE=DRABZF03 /FEA=EST /CNT=10 /TID=Rn.4087.2 /TIER=ConsEnd /STK=0 /UG=Rn.4087 /UG_TITLE=ESTs BG665185 1392904_at BF544602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF544602 /DB_XREF=gi:11635709 /DB_XREF=UI-R-BT0-qh-g-10-0-UI.r1 /CLONE=UI-R-BT0-qh-g-10-0-UI /FEA=EST /CNT=10 /TID=Rn.18062.1 /TIER=ConsEnd /STK=0 /UG=Rn.18062 /UG_TITLE=ESTs BF544602 PWWP domain containing 2A Pwwp2a 303060 NM_001127296 1392905_at BF552733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552733 /DB_XREF=gi:11662463 /DB_XREF=UI-R-C0-iy-c-09-0-UI.r1 /CLONE=UI-R-C0-iy-c-09-0-UI /FEA=EST /CNT=10 /TID=Rn.33178.1 /TIER=ConsEnd /STK=0 /UG=Rn.33178 /UG_TITLE=ESTs, Weakly similar to GBG9 RAT GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)G(S)G(O) GAMMA-9 SUBUNIT (R.norvegicus) BF552733 1392906_at AW528860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528860 /DB_XREF=gi:7171274 /DB_XREF=UI-R-BT1-akj-d-11-0-UI.s1 /CLONE=UI-R-BT1-akj-d-11-0-UI /FEA=EST /CNT=10 /TID=Rn.24668.1 /TIER=ConsEnd /STK=0 /UG=Rn.24668 /UG_TITLE=ESTs, Weakly similar to ribosomal protein S27a (Rattus norvegicus) (R.norvegicus) AW528860 ubiquitin-like 4 Ubl4 293864 NM_001106346 1392907_at BG668225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668225 /DB_XREF=gi:13890147 /DB_XREF=DRACND05 /CLONE=DRACND05 /FEA=EST /CNT=9 /TID=Rn.4058.1 /TIER=ConsEnd /STK=0 /UG=Rn.4058 /UG_TITLE=ESTs BG668225 1392908_at BG381166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381166 /DB_XREF=gi:13305638 /DB_XREF=UI-R-CT0-buh-a-04-0-UI.s1 /CLONE=UI-R-CT0-buh-a-04-0-UI /FEA=EST /CNT=9 /TID=Rn.3674.1 /TIER=ConsEnd /STK=0 /UG=Rn.3674 /UG_TITLE=ESTs BG381166 akirin 1 Akirin1 595134 NM_001030054 0005634 // nucleus // not recorded 1392909_at AT005674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AT005674 /DB_XREF=gi:13818679 /DB_XREF=AT005674 /CLONE=74-E14-2(1) /FEA=EST /CNT=9 /TID=Rn.17699.1 /TIER=ConsEnd /STK=0 /UG=Rn.17699 /UG_TITLE=ESTs AT005674 1392910_at AA859968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859968 /DB_XREF=gi:4230503 /DB_XREF=UI-R-E0-ca-g-05-0-UI.s1 /CLONE=UI-R-E0-ca-g-05-0-UI /FEA=EST /CNT=9 /TID=Rn.849.1 /TIER=ConsEnd /STK=0 /UG=Rn.849 /UG_TITLE=ESTs, Highly similar to Y124_HUMAN HYPOTHETICAL PROTEIN KIAA0124 (H.sapiens) AA859968 block of proliferation 1 Bop1 300050 NM_001024250 0000448 // cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // inferred from electronic annotation /// 0000448 // cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // not recorded /// 0000463 // maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // not recorded /// 0000463 // maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // inferred from sequence or structural similarity /// 0006364 // rRNA processing // inferred from electronic annotation /// 0006364 // rRNA processing // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0042273 // ribosomal large subunit biogenesis // inferred from electronic annotation /// 0042273 // ribosomal large subunit biogenesis // not recorded /// 0051726 // regulation of cell cycle // not recorded /// 0051726 // regulation of cell cycle // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0070545 // PeBoW complex // not recorded /// 0070545 // PeBoW complex // inferred from sequence or structural similarity 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043021 // ribonucleoprotein binding // inferred from electronic annotation /// 0043021 // ribonucleoprotein binding // not recorded 1392911_at AI548807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548807 /DB_XREF=gi:4466295 /DB_XREF=UI-R-C3-tr-h-08-0-UI.s1 /CLONE=UI-R-C3-tr-h-08-0-UI /FEA=EST /CNT=9 /TID=Rn.39179.1 /TIER=ConsEnd /STK=0 /UG=Rn.39179 /UG_TITLE=ESTs AI548807 1392912_at BG664561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664561 /DB_XREF=gi:13886483 /DB_XREF=DRABFD09 /CLONE=DRABFD09 /FEA=EST /CNT=9 /TID=Rn.11540.1 /TIER=ConsEnd /STK=0 /UG=Rn.11540 /UG_TITLE=ESTs BG664561 calcyclin binding protein Cacybp 289144 NM_001004208 0007507 // heart development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0045740 // positive regulation of DNA replication // inferred from direct assay /// 0055007 // cardiac muscle cell differentiation // inferred from direct assay /// 0060416 // response to growth hormone stimulus // inferred from mutant phenotype /// 0060548 // negative regulation of cell death // inferred from direct assay /// 0071277 // cellular response to calcium ion // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005641 // nuclear envelope lumen // inferred from electronic annotation /// 0005641 // nuclear envelope lumen // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030877 // beta-catenin destruction complex // inferred from electronic annotation /// 0030877 // beta-catenin destruction complex // not recorded /// 0043005 // neuron projection // inferred from direct assay /// 0044297 // cell body // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1392913_at AA964151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964151 /DB_XREF=gi:4279027 /DB_XREF=UI-R-E1-gl-g-02-0-UI.s1 /CLONE=UI-R-E1-gl-g-02-0-UI /FEA=EST /CNT=9 /TID=Rn.40142.1 /TIER=ConsEnd /STK=0 /UG=Rn.40142 /UG_TITLE=ESTs AA964151 zinc finger protein 710 Znf710 293044 NM_001134563 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1392914_at BI275467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275467 /DB_XREF=gi:14887352 /DB_XREF=UI-R-CX0-bww-g-11-0-UI.s1 /CLONE=UI-R-CX0-bww-g-11-0-UI /FEA=EST /CNT=9 /TID=Rn.25111.1 /TIER=ConsEnd /STK=0 /UG=Rn.25111 /UG_TITLE=ESTs BI275467 Ellis van Creveld syndrome homolog (human) Evc 289712 NM_001170439 0051216 // cartilage development // inferred from expression pattern 1392915_at BM389291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389291 /DB_XREF=gi:18189344 /DB_XREF=UI-R-DZ0-cko-f-22-0-UI.s1 /CLONE=UI-R-DZ0-cko-f-22-0-UI /FEA=EST /CNT=14 /TID=Rn.260.1 /TIER=ConsEnd /STK=0 /UG=Rn.260 /UG_TITLE=ESTs, Highly similar to CA1B RAT COLLAGEN ALPHA 1(XI) CHAIN (R.norvegicus) BM389291 collagen, type XI, alpha 1 Col11a1 25654 XM_001072431 /// XM_001072520 /// XM_001076840 /// XM_002726064 /// XM_002726065 /// XM_002729104 /// XM_002729105 /// XM_342325 0001502 // cartilage condensation // inferred from electronic annotation /// 0001502 // cartilage condensation // not recorded /// 0001503 // ossification // inferred from expression pattern /// 0002063 // chondrocyte development // inferred from electronic annotation /// 0002063 // chondrocyte development // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0006029 // proteoglycan metabolic process // inferred from electronic annotation /// 0006029 // proteoglycan metabolic process // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0030199 // collagen fibril organization // not recorded /// 0030199 // collagen fibril organization // traceable author statement /// 0030199 // collagen fibril organization // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0048705 // skeletal system morphogenesis // not recorded /// 0048705 // skeletal system morphogenesis // inferred from electronic annotation /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // not recorded /// 0051216 // cartilage development // not recorded /// 0051216 // cartilage development // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen // inferred from electronic annotation /// 0005581 // collagen // not recorded /// 0005592 // collagen type XI // not recorded /// 0031012 // extracellular matrix // inferred from direct assay /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // traceable author statement 1392916_at BM386695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386695 /DB_XREF=gi:18186748 /DB_XREF=UI-R-CN1-cjg-b-06-0-UI.s1 /CLONE=UI-R-CN1-cjg-b-06-0-UI /FEA=EST /CNT=12 /TID=Rn.23807.1 /TIER=ConsEnd /STK=0 /UG=Rn.23807 /UG_TITLE=ESTs, Moderately similar to I37356 epithelial microtubule-associated protein, 115K (H.sapiens) BM386695 microtubule-associated protein 7 Map7 293016 NM_001106270 /// NM_001198638 0000902 // cell morphogenesis // not recorded /// 0001578 // microtubule bundle formation // not recorded /// 0006687 // glycosphingolipid metabolic process // not recorded /// 0006970 // response to osmotic stress // not recorded /// 0006997 // nucleus organization // not recorded /// 0007281 // germ cell development // not recorded /// 0007283 // spermatogenesis // not recorded /// 0008283 // cell proliferation // not recorded /// 0009566 // fertilization // not recorded /// 0032526 // response to retinoic acid // not recorded /// 0033327 // Leydig cell differentiation // not recorded /// 0035265 // organ growth // not recorded /// 0048872 // homeostasis of number of cells // not recorded /// 0060009 // Sertoli cell development // not recorded 0005886 // plasma membrane // not recorded 0005515 // protein binding // not recorded 1392917_at BI302971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302971 /DB_XREF=gi:14979251 /DB_XREF=UI-R-DO0-ciy-h-19-0-UI.s1 /CLONE=UI-R-DO0-ciy-h-19-0-UI /FEA=EST /CNT=11 /TID=Rn.20308.1 /TIER=ConsEnd /STK=0 /UG=Rn.20308 /UG_TITLE=ESTs BI302971 1392918_at BE115650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115650 /DB_XREF=gi:8507755 /DB_XREF=UI-R-BJ1-avy-d-03-0-UI.s1 /CLONE=UI-R-BJ1-avy-d-03-0-UI /FEA=EST /CNT=10 /TID=Rn.40038.1 /TIER=ConsEnd /STK=0 /UG=Rn.40038 /UG_TITLE=ESTs, Weakly similar to T-COMPLEX PROTEIN 1, ALPHA SUBUNIT (R.norvegicus) BE115650 chaperonin containing Tcp1, subunit 8 (theta) Cct8 288305 NM_001105897 0006457 // protein folding // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1392919_at BI297513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297513 /DB_XREF=gi:14962954 /DB_XREF=UI-R-CV2-cgl-b-04-0-UI.s1 /CLONE=UI-R-CV2-cgl-b-04-0-UI /FEA=EST /CNT=10 /TID=Rn.40628.1 /TIER=ConsEnd /STK=0 /UG=Rn.40628 /UG_TITLE=ESTs BI297513 similar to Zinc finger protein 326 (Zinc finger protein-associated with nuclear matrix of 75 kDa) LOC682914 682914 XM_001063683 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1392920_at BE109672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109672 /DB_XREF=gi:8501777 /DB_XREF=UI-R-BJ1-avq-g-11-0-UI.s1 /CLONE=UI-R-BJ1-avq-g-11-0-UI /FEA=EST /CNT=9 /TID=Rn.11527.1 /TIER=ConsEnd /STK=0 /UG=Rn.11527 /UG_TITLE=ESTs BE109672 1392921_at BI294990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294990 /DB_XREF=gi:14957997 /DB_XREF=UI-R-DK0-cee-e-09-0-UI.s1 /CLONE=UI-R-DK0-cee-e-09-0-UI /FEA=EST /CNT=9 /TID=Rn.12985.1 /TIER=ConsEnd /STK=0 /UG=Rn.12985 /UG_TITLE=ESTs BI294990 1392922_at BE116619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116619 /DB_XREF=gi:8508724 /DB_XREF=UI-R-BS1-ayd-d-02-0-UI.s1 /CLONE=UI-R-BS1-ayd-d-02-0-UI /FEA=EST /CNT=9 /TID=Rn.23625.1 /TIER=ConsEnd /STK=0 /UG=Rn.23625 /UG_TITLE=ESTs BE116619 1392923_at H34314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H34314 /DB_XREF=gi:979731 /DB_XREF=EST111134 /CLONE=RPNBR59 /FEA=EST /CNT=9 /TID=Rn.9233.1 /TIER=ConsEnd /STK=0 /UG=Rn.9233 /UG_TITLE=ESTs H34314 1392924_at BG371591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371591 /DB_XREF=gi:13268128 /DB_XREF=UI-R-CW0-bvx-c-06-0-UI.s1 /CLONE=UI-R-CW0-bvx-c-06-0-UI /FEA=EST /CNT=9 /TID=Rn.22115.1 /TIER=ConsEnd /STK=0 /UG=Rn.22115 /UG_TITLE=ESTs BG371591 1392925_at BI132374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI132374 /DB_XREF=gi:14577771 /DB_XREF=EST00088 /CLONE=IMAGE:1778793 /FEA=EST /CNT=8 /TID=Rn.24435.1 /TIER=ConsEnd /STK=0 /UG=Rn.24435 /UG_TITLE=ESTs, Highly similar to T50625 hypothetical protein DKFZp762O2113.1 (H.sapiens) BI132374 suppression of tumorigenicity 7 ST7 296911 NM_001004102 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1392926_at BI281952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281952 /DB_XREF=gi:14932220 /DB_XREF=UI-R-CU0s-cbu-f-01-0-UI.s1 /CLONE=UI-R-CU0s-cbu-f-01-0-UI /FEA=EST /CNT=8 /TID=Rn.2807.1 /TIER=ConsEnd /STK=0 /UG=Rn.2807 /UG_TITLE=ESTs, Highly similar to LMA1 MOUSE LAMININ ALPHA-1 CHAIN PRECURSOR (M.musculus) BI281952 0007155 // cell adhesion // inferred from electronic annotation /// 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0045995 // regulation of embryonic development // inferred from electronic annotation 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005606 // laminin-1 complex // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation 1392927_at BG381724 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381724 /DB_XREF=gi:13306196 /DB_XREF=UI-R-CT0-bue-f-12-0-UI.s1 /CLONE=UI-R-CT0-bue-f-12-0-UI /FEA=EST /CNT=8 /TID=Rn.11767.1 /TIER=ConsEnd /STK=0 /UG=Rn.11767 /UG_TITLE=ESTs BG381724 progestin and adipoQ receptor family member IV Paqr4 302967 NM_001017377 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1392928_at AA891693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891693 /DB_XREF=gi:3018572 /DB_XREF=EST195496 /CLONE=RKIAF61 /FEA=EST /CNT=8 /TID=Rn.3555.1 /TIER=ConsEnd /STK=0 /UG=Rn.3555 /UG_TITLE=ESTs AA891693 similar to RIKEN cDNA 2810055F11 RGD1305721 314214 NM_001108031 0018112 // proline racemase activity // inferred from electronic annotation 1392929_at BF416678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416678 /DB_XREF=gi:11404667 /DB_XREF=UI-R-CA0-bku-f-02-0-UI.s1 /CLONE=UI-R-CA0-bku-f-02-0-UI /FEA=EST /CNT=8 /TID=Rn.6943.1 /TIER=ConsEnd /STK=0 /UG=Rn.6943 /UG_TITLE=ESTs BF416678 RGD1565616 RGD1565616 499891 NM_001109206 1392930_at BI276980 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276980 /DB_XREF=gi:14922414 /DB_XREF=UI-R-CW0-bxo-g-05-0-UI.s1 /CLONE=UI-R-CW0-bxo-g-05-0-UI /FEA=EST /CNT=8 /TID=Rn.17507.1 /TIER=ConsEnd /STK=0 /UG=Rn.17507 /UG_TITLE=ESTs BI276980 Armadillo repeat containing 1 Armc1 294948 NM_001106425 0030001 // metal ion transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005488 // binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392931_at BM390705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390705 /DB_XREF=gi:18190758 /DB_XREF=UI-R-CN1-cjr-b-17-0-UI.s1 /CLONE=UI-R-CN1-cjr-b-17-0-UI /FEA=EST /CNT=8 /TID=Rn.46271.1 /TIER=ConsEnd /STK=0 /UG=Rn.46271 /UG_TITLE=ESTs BM390705 ATR interacting protein Atrip 301014 NM_001106859 0006260 // DNA replication // not recorded 0005654 // nucleoplasm // not recorded 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // not recorded 1392932_at BI279191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279191 /DB_XREF=gi:14926766 /DB_XREF=UI-R-DA0-byk-d-01-0-UI.s1 /CLONE=UI-R-DA0-byk-d-01-0-UI /FEA=EST /CNT=8 /TID=Rn.22233.3 /TIER=ConsEnd /STK=0 /UG=Rn.22233 /UG_TITLE=ESTs BI279191 leukocyte receptor cluster (LRC) member 8 Leng8 361506 NM_001037790 0005515 // protein binding // not recorded 1392933_a_at BF288704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288704 /DB_XREF=gi:11219878 /DB_XREF=EST453399 /CLONE=RGIGY25 /FEA=EST /CNT=2 /TID=Rn.9084.2 /TIER=ConsEnd /STK=0 /UG=Rn.9084 /UG_TITLE=ESTs BF288704 1392934_at BM384509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384509 /DB_XREF=gi:18184562 /DB_XREF=UI-R-CN1-cjs-k-04-0-UI.s2 /CLONE=UI-R-CN1-cjs-k-04-0-UI /FEA=EST /CNT=8 /TID=Rn.7062.1 /TIER=ConsEnd /STK=0 /UG=Rn.7062 /UG_TITLE=ESTs BM384509 1392935_at BE115639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115639 /DB_XREF=gi:8507744 /DB_XREF=UI-R-BJ1-avy-c-04-0-UI.s1 /CLONE=UI-R-BJ1-avy-c-04-0-UI /FEA=EST /CNT=11 /TID=Rn.9241.1 /TIER=ConsEnd /STK=0 /UG=Rn.9241 /UG_TITLE=ESTs BE115639 1392936_at AW434972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434972 /DB_XREF=gi:6966279 /DB_XREF=UI-R-BJ0p-afv-b-05-0-UI.s1 /CLONE=UI-R-BJ0p-afv-b-05-0-UI /FEA=EST /CNT=11 /TID=Rn.12690.1 /TIER=ConsEnd /STK=0 /UG=Rn.12690 /UG_TITLE=ESTs, Weakly similar to T34543 hypothetical protein DKFZp434O1221.1 (H.sapiens) AW434972 RNA binding motif protein 25 /// similar to RNA binding motif protein 25 Rbm25 /// RGD1565486 366693 /// 497865 NM_001108984 /// XM_001079014 /// XM_573045 0006397 // mRNA processing // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1392937_at BF557327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557327 /DB_XREF=gi:11667057 /DB_XREF=UI-R-A1-ex-e-12-0-UI.r1 /CLONE=UI-R-A1-ex-e-12-0-UI /FEA=EST /CNT=10 /TID=Rn.72708.1 /TIER=ConsEnd /STK=0 /UG=Rn.72708 /UG_TITLE=ESTs, Highly similar to CYCI_MOUSE CYCLIN I (M.musculus) BF557327 cyclin I Ccni 289500 NM_001105998 1392938_s_at BF561368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561368 /DB_XREF=gi:11671098 /DB_XREF=UI-R-C0-hq-d-08-0-UI.r1 /CLONE=UI-R-C0-hq-d-08-0-UI /FEA=EST /CNT=10 /TID=Rn.40386.2 /TIER=ConsEnd /STK=0 /UG=Rn.40386 /UG_TITLE=ESTs BF561368 similar to C11orf17 protein RGD1306959 361624 NM_001108497 0005515 // protein binding // not recorded 1392939_at BM388933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388933 /DB_XREF=gi:18188986 /DB_XREF=UI-R-DZ0-ckn-l-05-0-UI.s1 /CLONE=UI-R-DZ0-ckn-l-05-0-UI /FEA=EST /CNT=9 /TID=Rn.24854.1 /TIER=ConsEnd /STK=0 /UG=Rn.24854 /UG_TITLE=ESTs, Weakly similar to K07H8.2a.p (Caenorhabditis elegans) (C.elegans) BM388933 solute carrier family 41, member 3 Slc41a3 641603 NM_001037492 0006812 // cation transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008324 // cation transmembrane transporter activity // inferred from electronic annotation 1392940_at BE095915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095915 /DB_XREF=gi:8486846 /DB_XREF=UI-R-BU0-apd-b-06-0-UI.s1 /CLONE=UI-R-BU0-apd-b-06-0-UI /FEA=EST /CNT=9 /TID=Rn.37568.1 /TIER=ConsEnd /STK=0 /UG=Rn.37568 /UG_TITLE=ESTs BE095915 1392941_at BE103748 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103748 /DB_XREF=gi:8495848 /DB_XREF=UI-R-BX0-arp-b-10-0-UI.s1 /CLONE=UI-R-BX0-arp-b-10-0-UI /FEA=EST /CNT=9 /TID=Rn.836.1 /TIER=ConsEnd /STK=0 /UG=Rn.836 /UG_TITLE=ESTs BE103748 huntingtin interacting protein 1 Hip1 192154 NM_001100475 0006897 // endocytosis // not recorded /// 0006897 // endocytosis // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0006919 // activation of caspase activity // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from electronic annotation /// 0048260 // positive regulation of receptor-mediated endocytosis // not recorded /// 0048268 // clathrin coat assembly // inferred from direct assay /// 0048268 // clathrin coat assembly // not recorded /// 0048268 // clathrin coat assembly // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016021 // integral to membrane // traceable author statement /// 0030118 // clathrin coat // traceable author statement /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030276 // clathrin binding // inferred from direct assay /// 0030276 // clathrin binding // not recorded /// 0030276 // clathrin binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // not recorded 1392942_at BM383823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383823 /DB_XREF=gi:18183876 /DB_XREF=UI-R-DM1-ckb-n-17-0-UI.s1 /CLONE=UI-R-DM1-ckb-n-17-0-UI /FEA=EST /CNT=8 /TID=Rn.19351.1 /TIER=ConsEnd /STK=0 /UG=Rn.19351 /UG_TITLE=ESTs BM383823 similar to hypothetical protein MGC17943 RGD1563325 362857 NM_001108739 1392943_at BG665934 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665934 /DB_XREF=gi:13887856 /DB_XREF=DRACKE09 /CLONE=DRACKE09 /FEA=EST /CNT=8 /TID=Rn.43929.1 /TIER=ConsEnd /STK=0 /UG=Rn.43929 /UG_TITLE=ESTs BG665934 membrane bound O-acyltransferase domain containing 2 Mboat2 313997 NM_001108016 0008654 // phospholipid biosynthetic process // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1392944_at AW251506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251506 /DB_XREF=gi:6595097 /DB_XREF=UI-R-BJ0-ado-a-02-0-UI.s1 /CLONE=UI-R-BJ0-ado-a-02-0-UI /FEA=EST /CNT=8 /TID=Rn.20009.1 /TIER=ConsEnd /STK=0 /UG=Rn.20009 /UG_TITLE=ESTs AW251506 1392945_at BE115154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115154 /DB_XREF=gi:8507259 /DB_XREF=UI-R-BS1-axt-h-04-0-UI.s1 /CLONE=UI-R-BS1-axt-h-04-0-UI /FEA=EST /CNT=8 /TID=Rn.9388.1 /TIER=ConsEnd /STK=0 /UG=Rn.9388 /UG_TITLE=ESTs BE115154 1392946_at AI029194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029194 /DB_XREF=gi:4296872 /DB_XREF=UI-R-C0-ip-b-03-0-UI.s1 /CLONE=UI-R-C0-ip-b-03-0-UI /FEA=EST /CNT=8 /TID=Rn.11575.1 /TIER=ConsEnd /STK=0 /UG=Rn.11575 /UG_TITLE=ESTs AI029194 1392947_at AI030349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030349 /DB_XREF=gi:3248175 /DB_XREF=UI-R-C0-iu-g-02-0-UI.s1 /CLONE=UI-R-C0-iu-g-02-0-UI /FEA=EST /CNT=8 /TID=Rn.6374.1 /TIER=ConsEnd /STK=0 /UG=Rn.6374 /UG_TITLE=ESTs AI030349 1392948_at BI290737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290737 /DB_XREF=gi:14949590 /DB_XREF=UI-R-DK0-cfy-g-10-0-UI.s1 /CLONE=UI-R-DK0-cfy-g-10-0-UI /FEA=EST /CNT=8 /TID=Rn.7412.1 /TIER=ConsEnd /STK=0 /UG=Rn.7412 /UG_TITLE=ESTs BI290737 1392949_at BF420756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420756 /DB_XREF=gi:11408745 /DB_XREF=UI-R-BJ2-bpz-g-11-0-UI.s1 /CLONE=UI-R-BJ2-bpz-g-11-0-UI /FEA=EST /CNT=8 /TID=Rn.21470.1 /TIER=ConsEnd /STK=0 /UG=Rn.21470 /UG_TITLE=ESTs BF420756 Kinase D-interacting substrate 220 Kidins220 116478 NM_053795 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0019887 // protein kinase regulator activity // inferred from direct assay /// 0019901 // protein kinase binding // inferred from direct assay 1392950_at BF552973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552973 /DB_XREF=gi:11662697 /DB_XREF=UI-R-C2-nb-c-03-0-UI.r1 /CLONE=UI-R-C2-nb-c-03-0-UI /FEA=EST /CNT=8 /TID=Rn.17635.1 /TIER=ConsEnd /STK=0 /UG=Rn.17635 /UG_TITLE=ESTs, Weakly similar to DCC MOUSE TUMOR SUPPRESSOR PROTEIN DCC PRECURSOR (M.musculus) BF552973 myotilin Myot 291605 NM_001106148 0005783 // endoplasmic reticulum // inferred from electronic annotation 0005515 // protein binding // not recorded 1392951_at AW521231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521231 /DB_XREF=gi:7163609 /DB_XREF=UI-R-BO0-agk-g-06-0-UI.s1 /CLONE=UI-R-BO0-agk-g-06-0-UI /FEA=EST /CNT=8 /TID=Rn.14379.1 /TIER=ConsEnd /STK=0 /UG=Rn.14379 /UG_TITLE=ESTs AW521231 1392952_at BI277131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277131 /DB_XREF=gi:14922715 /DB_XREF=UI-R-CY0-bxv-b-05-0-UI.s1 /CLONE=UI-R-CY0-bxv-b-05-0-UI /FEA=EST /CNT=8 /TID=Rn.33519.1 /TIER=ConsEnd /STK=0 /UG=Rn.33519 /UG_TITLE=ESTs BI277131 acyl-CoA synthetase family member 2 Acsf2 619561 NM_001034951 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1392953_at BI296250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296250 /DB_XREF=gi:14960503 /DB_XREF=UI-R-DK0-cey-b-03-0-UI.s1 /CLONE=UI-R-DK0-cey-b-03-0-UI /FEA=EST /CNT=8 /TID=Rn.38334.1 /TIER=ConsEnd /STK=0 /UG=Rn.38334 /UG_TITLE=ESTs, Weakly similar to T15B7.2.p (Caenorhabditis elegans) (C.elegans) BI296250 protein tyrosine phosphatase-like (proline instead of catalytic arginine), member a Ptpla 680115 NM_001101001 1392954_at AI029637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029637 /DB_XREF=gi:4299930 /DB_XREF=UI-R-C0-jg-a-09-0-UI.s1 /CLONE=UI-R-C0-jg-a-09-0-UI /FEA=EST /CNT=7 /TID=Rn.33970.2 /TIER=ConsEnd /STK=0 /UG=Rn.33970 /UG_TITLE=ESTs AI029637 1392955_at BF548909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548909 /DB_XREF=gi:11640016 /DB_XREF=UI-R-A0-aj-h-10-0-UI.r1 /CLONE=UI-R-A0-aj-h-10-0-UI /FEA=EST /CNT=7 /TID=Rn.17441.1 /TIER=ConsEnd /STK=0 /UG=Rn.17441 /UG_TITLE=ESTs BF548909 Sel-1 suppressor of lin-12-like (C. elegans) Sel1l 314352 NM_177933 0007219 // Notch signaling pathway // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1392956_at BG373315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373315 /DB_XREF=gi:13269852 /DB_XREF=UI-R-CV1-brx-c-10-0-UI.s1 /CLONE=UI-R-CV1-brx-c-10-0-UI /FEA=EST /CNT=7 /TID=Rn.34497.1 /TIER=ConsEnd /STK=0 /UG=Rn.34497 /UG_TITLE=ESTs BG373315 similar to RIKEN cDNA 2810443J12 RGD1304868 296550 XR_009138 /// XR_086189 0017183 // peptidyl-diphthamide biosynthetic process from peptidyl-histidine // inferred from sequence or structural similarity 1392957_at BF565151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565151 /DB_XREF=gi:11674881 /DB_XREF=UI-R-BO1-ajs-e-09-0-UI.r1 /CLONE=UI-R-BO1-ajs-e-09-0-UI /FEA=EST /CNT=7 /TID=Rn.26562.1 /TIER=ConsEnd /STK=0 /UG=Rn.26562 /UG_TITLE=ESTs BF565151 single-stranded DNA binding protein 2 Ssbp2 361877 XM_001065491 /// XM_342171 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1392958_at AI547426 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547426 /DB_XREF=gi:4464914 /DB_XREF=UI-R-C3-tk-b-06-0-UI.s1 /CLONE=UI-R-C3-tk-b-06-0-UI /FEA=EST /CNT=7 /TID=Rn.22698.1 /TIER=ConsEnd /STK=0 /UG=Rn.22698 /UG_TITLE=ESTs AI547426 ubiquitin carboxyl-terminal hydrolase CYLD LOC100362727 100362727 XM_002728578 1392959_at AA925983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925983 /DB_XREF=gi:4237174 /DB_XREF=UI-R-A1-es-a-04-0-UI.s1 /CLONE=UI-R-A1-es-a-04-0-UI /FEA=EST /CNT=7 /TID=Rn.22903.1 /TIER=ConsEnd /STK=0 /UG=Rn.22903 /UG_TITLE=ESTs, Weakly similar to F53E2.1.p (Caenorhabditis elegans) (C.elegans) AA925983 Bwk1 leukemia-related gene Bwk1 296466 NM_198743 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392960_at AI713860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI713860 /DB_XREF=gi:5017660 /DB_XREF=UI-R-AG1-aai-b-10-0-UI.s1 /CLONE=UI-R-AG1-aai-b-10-0-UI /FEA=EST /CNT=7 /TID=Rn.41221.2 /TIER=ConsEnd /STK=0 /UG=Rn.41221 /UG_TITLE=ESTs AI713860 similar to RIKEN cDNA 2310004I24 gene RGD1309906 287406 NM_001009246 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047631 // ADP-ribose diphosphatase activity // inferred from electronic annotation /// 0047734 // CDP-glycerol diphosphatase activity // inferred from electronic annotation 1392961_at AW534383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534383 /DB_XREF=gi:7176797 /DB_XREF=UI-R-C4-alo-h-03-0-UI.s1 /CLONE=UI-R-C4-alo-h-03-0-UI /FEA=EST /CNT=7 /TID=Rn.48321.1 /TIER=ConsEnd /STK=0 /UG=Rn.48321 /UG_TITLE=ESTs AW534383 MOB1, Mps One Binder kinase activator-like 1B (yeast) Mobkl1b 297387 NM_001033891 0035329 // hippo signaling cascade // inferred from electronic annotation /// 0035329 // hippo signaling cascade // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1392962_at AW525482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525482 /DB_XREF=gi:7167867 /DB_XREF=UI-R-BJ0p-ail-b-04-0-UI.s1 /CLONE=UI-R-BJ0p-ail-b-04-0-UI /FEA=EST /CNT=7 /TID=Rn.22780.1 /TIER=ConsEnd /STK=0 /UG=Rn.22780 /UG_TITLE=ESTs AW525482 1392963_at BI276031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276031 /DB_XREF=gi:14920543 /DB_XREF=UI-R-CW0-bwn-c-09-0-UI.s1 /CLONE=UI-R-CW0-bwn-c-09-0-UI /FEA=EST /CNT=7 /TID=Rn.21802.1 /TIER=ConsEnd /STK=0 /UG=Rn.21802 /UG_TITLE=ESTs, Highly similar to Y193_HUMAN HYPOTHETICAL PROTEIN KIAA0193 (H.sapiens) BI276031 secernin 1 Scrn1 502776 NM_001025063 0006508 // proteolysis // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded 0016805 // dipeptidase activity // inferred from electronic annotation 1392964_at BF559822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559822 /DB_XREF=gi:11669552 /DB_XREF=UI-R-E1-gj-d-12-0-UI.r1 /CLONE=UI-R-E1-gj-d-12-0-UI /FEA=EST /CNT=7 /TID=Rn.23504.1 /TIER=ConsEnd /STK=0 /UG=Rn.23504 /UG_TITLE=ESTs BF559822 1392965_a_at AI028877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI028877 /DB_XREF=gi:4294676 /DB_XREF=UI-R-C0-ik-d-07-0-UI.s1 /CLONE=UI-R-C0-ik-d-07-0-UI /FEA=EST /CNT=7 /TID=Rn.6092.1 /TIER=ConsEnd /STK=0 /UG=Rn.6092 /UG_TITLE=ESTs AI028877 SPARC related modular calcium binding 2 Smoc2 292401 NM_001106215 0007165 // signal transduction // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // not recorded /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005614 // interstitial matrix // inferred from electronic annotation /// 0005614 // interstitial matrix // not recorded /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005539 // glycosaminoglycan binding // not recorded /// 0005539 // glycosaminoglycan binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded 1392966_at BF396256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396256 /DB_XREF=gi:11381228 /DB_XREF=UI-R-BS2-bdw-a-12-0-UI.s1 /CLONE=UI-R-BS2-bdw-a-12-0-UI /FEA=EST /CNT=7 /TID=Rn.25417.1 /TIER=ConsEnd /STK=0 /UG=Rn.25417 /UG_TITLE=ESTs BF396256 zinc finger protein 410 Zfp410 314310 NM_001108042 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1392967_at BF550692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550692 /DB_XREF=gi:11660422 /DB_XREF=UI-R-C0-ht-b-07-0-UI.r1 /CLONE=UI-R-C0-ht-b-07-0-UI /FEA=EST /CNT=7 /TID=Rn.27350.1 /TIER=ConsEnd /STK=0 /UG=Rn.27350 /UG_TITLE=ESTs BF550692 similar to RIKEN cDNA 2700062C07 MGC116121 498830 NM_001024905 1392968_at BI300566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300566 /DB_XREF=gi:14976846 /DB_XREF=UI-R-CV2-cim-e-02-0-UI.s1 /CLONE=UI-R-CV2-cim-e-02-0-UI /FEA=EST /CNT=7 /TID=Rn.55187.1 /TIER=ConsEnd /STK=0 /UG=Rn.55187 /UG_TITLE=ESTs BI300566 1392969_at BI282309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282309 /DB_XREF=gi:14932949 /DB_XREF=UI-R-CU0s-cbz-a-09-0-UI.s1 /CLONE=UI-R-CU0s-cbz-a-09-0-UI /FEA=EST /CNT=7 /TID=Rn.12238.1 /TIER=ConsEnd /STK=0 /UG=Rn.12238 /UG_TITLE=ESTs BI282309 1392970_at BI285605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285605 /DB_XREF=gi:14939429 /DB_XREF=UI-R-CW0-bvv-c-11-0-UI.s2 /CLONE=UI-R-CW0-bvv-c-11-0-UI /FEA=EST /CNT=7 /TID=Rn.44026.1 /TIER=ConsEnd /STK=0 /UG=Rn.44026 /UG_TITLE=ESTs BI285605 transmembrane protein 108 Tmem108 300967 XM_001069716 /// XM_217247 1392971_at BG377743 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377743 /DB_XREF=gi:13302215 /DB_XREF=UI-R-CU0-bva-e-06-0-UI.s1 /CLONE=UI-R-CU0-bva-e-06-0-UI /FEA=EST /CNT=7 /TID=Rn.2295.1 /TIER=ConsEnd /STK=0 /UG=Rn.2295 /UG_TITLE=ESTs BG377743 1392972_at BF554226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554226 /DB_XREF=gi:11663956 /DB_XREF=UI-R-C0-hp-a-06-0-UI.r1 /CLONE=UI-R-C0-hp-a-06-0-UI /FEA=EST /CNT=7 /TID=Rn.20015.1 /TIER=ConsEnd /STK=0 /UG=Rn.20015 /UG_TITLE=ESTs, Highly similar to TRIO_HUMAN TRIPLE FUNCTIONAL DOMAIN PROTEIN (H.sapiens) BF554226 0006468 // protein phosphorylation // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1392973_at AI073173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073173 /DB_XREF=gi:3399367 /DB_XREF=UI-R-Y0-mi-f-01-0-UI.s1 /CLONE=UI-R-Y0-mi-f-01-0-UI /FEA=EST /CNT=7 /TID=Rn.8016.1 /TIER=ConsEnd /STK=0 /UG=Rn.8016 /UG_TITLE=ESTs AI073173 neuron navigator 2 Nav2 171563 NM_138529 0007399 // nervous system development // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1392974_at BI295427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295427 /DB_XREF=gi:14958863 /DB_XREF=UI-R-DK0-cer-f-11-0-UI.s1 /CLONE=UI-R-DK0-cer-f-11-0-UI /FEA=EST /CNT=7 /TID=Rn.7692.1 /TIER=ConsEnd /STK=0 /UG=Rn.7692 /UG_TITLE=ESTs BI295427 WAS protein family, member 1 Wasf1 294568 NM_001025114 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392975_at AI058938 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058938 /DB_XREF=gi:3332715 /DB_XREF=UI-R-C1-lr-a-09-0-UI.s1 /CLONE=UI-R-C1-lr-a-09-0-UI /FEA=EST /CNT=7 /TID=Rn.19229.1 /TIER=ConsEnd /STK=0 /UG=Rn.19229 /UG_TITLE=ESTs AI058938 similar to Protease-associated domain-containing protein of 21 kDa precursor LOC686393 686393 XM_001073919 1392976_at BF417385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417385 /DB_XREF=gi:11405374 /DB_XREF=UI-R-CN0-bld-e-10-0-UI.s1 /CLONE=UI-R-CN0-bld-e-10-0-UI /FEA=EST /CNT=7 /TID=Rn.65524.1 /TIER=ConsEnd /STK=0 /UG=Rn.65524 /UG_TITLE=ESTs, Highly similar to TROPOMYOSIN BETA CHAIN, SKELETAL MUSCLE (R.norvegicus) BF417385 tropomyosin 2, beta Tpm2 500450 NM_001024345 0006936 // muscle contraction // not recorded /// 0043462 // regulation of ATPase activity // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005515 // protein binding // not recorded 1392977_at BE114491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114491 /DB_XREF=gi:8506596 /DB_XREF=UI-R-CA0-axm-g-10-0-UI.s1 /CLONE=UI-R-CA0-axm-g-10-0-UI /FEA=EST /CNT=7 /TID=Rn.25039.1 /TIER=ConsEnd /STK=0 /UG=Rn.25039 /UG_TITLE=ESTs BE114491 1392978_at BE117086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117086 /DB_XREF=gi:8509191 /DB_XREF=UI-R-BJ1-awt-f-06-0-UI.s1 /CLONE=UI-R-BJ1-awt-f-06-0-UI /FEA=EST /CNT=7 /TID=Rn.6118.1 /TIER=ConsEnd /STK=0 /UG=Rn.6118 /UG_TITLE=ESTs, Weakly similar to solute carrier family 25 (carnitineacylcarnitine translocase), member 20 (Rattus norvegicus) (R.norvegicus) BE117086 solute carrier family 25, member 28 Slc25a28 688811 NM_001109515 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1392979_at AW918443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918443 /DB_XREF=gi:8084219 /DB_XREF=EST349747 /CLONE=RGIES39 /FEA=EST /CNT=7 /TID=Rn.11540.2 /TIER=ConsEnd /STK=0 /UG=Rn.11540 /UG_TITLE=ESTs AW918443 calcyclin binding protein Cacybp 289144 NM_001004208 0007507 // heart development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0045740 // positive regulation of DNA replication // inferred from direct assay /// 0055007 // cardiac muscle cell differentiation // inferred from direct assay /// 0060416 // response to growth hormone stimulus // inferred from mutant phenotype /// 0060548 // negative regulation of cell death // inferred from direct assay /// 0071277 // cellular response to calcium ion // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005641 // nuclear envelope lumen // inferred from electronic annotation /// 0005641 // nuclear envelope lumen // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030877 // beta-catenin destruction complex // inferred from electronic annotation /// 0030877 // beta-catenin destruction complex // not recorded /// 0043005 // neuron projection // inferred from direct assay /// 0044297 // cell body // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1392980_at AI716456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716456 /DB_XREF=gi:5033709 /DB_XREF=UI-R-Y0-ach-c-06-0-UI.s1 /CLONE=UI-R-Y0-ach-c-06-0-UI /FEA=EST /CNT=7 /TID=Rn.35587.1 /TIER=ConsEnd /STK=0 /UG=Rn.35587 /UG_TITLE=ESTs, Highly similar to T-LYMPHOMA INVASION AND METASTASIS INDUCING PROTEIN 1 (M.musculus) AI716456 T-cell lymphoma invasion and metastasis 1 Tiam1 304109 NM_001100558 0006915 // apoptosis // not recorded /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0048013 // ephrin receptor signaling pathway // not recorded /// 0050772 // positive regulation of axonogenesis // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005543 // phospholipid binding // not recorded /// 0046875 // ephrin receptor binding // not recorded 1392981_at BE109997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109997 /DB_XREF=gi:8502102 /DB_XREF=UI-R-BJ1-aum-g-10-0-UI.s1 /CLONE=UI-R-BJ1-aum-g-10-0-UI /FEA=EST /CNT=7 /TID=Rn.15866.1 /TIER=ConsEnd /STK=0 /UG=Rn.15866 /UG_TITLE=ESTs BE109997 iroquois homeobox 4 Irx4 306655 NM_001107330 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048561 // establishment of organ orientation // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1392982_at AA818059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818059 /DB_XREF=gi:4198579 /DB_XREF=UI-R-A0-ag-a-02-0-UI.s2 /CLONE=UI-R-A0-ag-a-02-0-UI /FEA=EST /CNT=11 /TID=Rn.70548.1 /TIER=ConsEnd /STK=0 /UG=Rn.70548 /UG_TITLE=ESTs AA818059 1392983_at BE103250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103250 /DB_XREF=gi:8495349 /DB_XREF=UI-R-BX0-aqy-d-06-0-UI.s1 /CLONE=UI-R-BX0-aqy-d-06-0-UI /FEA=EST /CNT=10 /TID=Rn.15873.1 /TIER=ConsEnd /STK=0 /UG=Rn.15873 /UG_TITLE=ESTs, Highly similar to JC6523 26S proteasome regulatory complex chain p55 (H.sapiens) BE103250 proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 Psmd12 287772 NM_001005875 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation /// 0005838 // proteasome regulatory particle // inferred from sequence or structural similarity 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392984_at BG671686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671686 /DB_XREF=gi:13893785 /DB_XREF=DRNBWE06 /CLONE=DRNBWE06 /FEA=EST /CNT=9 /TID=Rn.44206.1 /TIER=ConsEnd /STK=0 /UG=Rn.44206 /UG_TITLE=ESTs, Weakly similar to CNE6_MOUSE COPINE VI (NEURONAL-COPINE) (N-COPINE) (M.musculus) BG671686 copine III Cpne3 313087 NM_001107917 0005829 // cytosol // not recorded 0004674 // protein serine/threonine kinase activity // not recorded 1392985_at BF555731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555731 /DB_XREF=gi:11665461 /DB_XREF=UI-R-A1-dv-g-06-0-UI.r1 /CLONE=UI-R-A1-dv-g-06-0-UI /FEA=EST /CNT=9 /TID=Rn.20676.1 /TIER=ConsEnd /STK=0 /UG=Rn.20676 /UG_TITLE=ESTs BF555731 ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) Arih1 300756 NM_001013108 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1392986_at AI227920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227920 /DB_XREF=gi:3811807 /DB_XREF=EST224615 /CLONE=RBRCN62 /FEA=EST /CNT=9 /TID=Rn.10571.1 /TIER=ConsEnd /STK=0 /UG=Rn.10571 /UG_TITLE=ESTs, Highly similar to STRI RAT STRIATIN (R.norvegicus) AI227920 striatin, calmodulin binding protein Strn 29149 NM_019148 0007626 // locomotory behavior // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016358 // dendrite development // inferred from mutant phenotype 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation /// 0000159 // protein phosphatase type 2A complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0005923 // tight junction // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from direct assay /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0030331 // estrogen receptor binding // inferred from electronic annotation /// 0030331 // estrogen receptor binding // not recorded /// 0032403 // protein complex binding // inferred from direct assay /// 0032403 // protein complex binding // not recorded /// 0032403 // protein complex binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // non-traceable author statement /// 0051721 // protein phosphatase 2A binding // inferred from electronic annotation /// 0051721 // protein phosphatase 2A binding // not recorded /// 0070016 // armadillo repeat domain binding // inferred from electronic annotation /// 0070016 // armadillo repeat domain binding // not recorded 1392987_at AI136865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136865 /DB_XREF=gi:3637642 /DB_XREF=UI-R-C2p-of-d-07-0-UI.s1 /CLONE=UI-R-C2p-of-d-07-0-UI /FEA=EST /CNT=9 /TID=Rn.22124.1 /TIER=ConsEnd /STK=0 /UG=Rn.22124 /UG_TITLE=ESTs AI136865 transcriptional adaptor 2 (ADA2 homolog, yeast)-beta Tada2b 289717 NM_001170455 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1392988_at BF407232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407232 /DB_XREF=gi:11395207 /DB_XREF=UI-R-BJ2-bqc-c-02-0-UI.s1 /CLONE=UI-R-BJ2-bqc-c-02-0-UI /FEA=EST /CNT=8 /TID=Rn.23620.1 /TIER=ConsEnd /STK=0 /UG=Rn.23620 /UG_TITLE=ESTs, Highly similar to NSDL MOUSE NAD(P)-DEPENDENT STEROID DEHYDROGENASE-LIKE PROTEIN (M.musculus) BF407232 NAD(P) dependent steroid dehydrogenase-like Nsdhl 309262 NM_001009399 0001942 // hair follicle development // inferred from electronic annotation /// 0001942 // hair follicle development // not recorded /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000252 // C-3 sterol dehydrogenase (C-4 sterol decarboxylase) activity // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003854 // 3-beta-hydroxy-delta5-steroid dehydrogenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0047012 // sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity // inferred from electronic annotation 1392989_at BI295986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295986 /DB_XREF=gi:14959979 /DB_XREF=UI-R-DK0-cfd-a-12-0-UI.s1 /CLONE=UI-R-DK0-cfd-a-12-0-UI /FEA=EST /CNT=8 /TID=Rn.25467.2 /TIER=ConsEnd /STK=0 /UG=Rn.25467 /UG_TITLE=ESTs BI295986 1392990_at AI031004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI031004 /DB_XREF=gi:3248830 /DB_XREF=UI-R-C0-je-e-12-0-UI.s1 /CLONE=UI-R-C0-je-e-12-0-UI /FEA=EST /CNT=8 /TID=Rn.7884.1 /TIER=ConsEnd /STK=0 /UG=Rn.7884 /UG_TITLE=ESTs, Highly similar to SX17 MOUSE TRANSCRIPTION FACTOR SOX-17 (M.musculus) AI031004 SRY (sex determining region Y)-box 17 Sox17 312936 NM_001107902 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001706 // endoderm formation // inferred from electronic annotation /// 0001706 // endoderm formation // not recorded /// 0001947 // heart looping // inferred from electronic annotation /// 0001947 // heart looping // not recorded /// 0003151 // outflow tract morphogenesis // inferred from electronic annotation /// 0003151 // outflow tract morphogenesis // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0031648 // protein destabilization // inferred from electronic annotation /// 0031648 // protein destabilization // not recorded /// 0035050 // embryonic heart tube development // inferred from electronic annotation /// 0035050 // embryonic heart tube development // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0050821 // protein stabilization // inferred from electronic annotation /// 0050821 // protein stabilization // not recorded /// 0060214 // endocardium formation // inferred from electronic annotation /// 0060214 // endocardium formation // not recorded /// 0060912 // cardiac cell fate specification // inferred from electronic annotation /// 0060913 // cardiac cell fate determination // not recorded /// 0060956 // endocardial cell differentiation // inferred from electronic annotation /// 0060956 // endocardial cell differentiation // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded 1392991_at AA859535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859535 /DB_XREF=gi:4230081 /DB_XREF=UI-R-E0-br-c-07-0-UI.s1 /CLONE=UI-R-E0-br-c-07-0-UI /FEA=EST /CNT=8 /TID=Rn.7592.1 /TIER=ConsEnd /STK=0 /UG=Rn.7592 /UG_TITLE=ESTs, Highly similar to JC4676 PolII transcription factor TFTIID chain TAFII20 (H.sapiens) AA859535 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor Taf12 682902 NM_001115036 0006352 // transcription initiation // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0043966 // histone H3 acetylation // not recorded 0000125 // PCAF complex // not recorded /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005669 // transcription factor TFIID complex // inferred from electronic annotation /// 0005669 // transcription factor TFIID complex // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0030914 // STAGA complex // not recorded /// 0033276 // transcription factor TFTC complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003713 // transcription coactivator activity // not recorded /// 0004402 // histone acetyltransferase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016986 // transcription initiation factor activity // inferred from electronic annotation /// 0016986 // transcription initiation factor activity // not recorded 1392992_at BF395999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395999 /DB_XREF=gi:11380970 /DB_XREF=UI-R-BS2-bdu-a-12-0-UI.s1 /CLONE=UI-R-BS2-bdu-a-12-0-UI /FEA=EST /CNT=8 /TID=Rn.22841.1 /TIER=ConsEnd /STK=0 /UG=Rn.22841 /UG_TITLE=ESTs, Weakly similar to S62356 TRP-185 protein (H.sapiens) BF395999 1392993_at BG665293 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665293 /DB_XREF=gi:13887215 /DB_XREF=DRACBA01 /CLONE=DRACBA01 /FEA=EST /CNT=6 /TID=Rn.25218.1 /TIER=ConsEnd /STK=0 /UG=Rn.25218 /UG_TITLE=ESTs BG665293 family with sequence similarity 13, member B1 Fam13b1 291694 NM_001106158 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 1392994_at AW522671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522671 /DB_XREF=gi:7165056 /DB_XREF=UI-R-BO0-ahl-e-01-0-UI.s1 /CLONE=UI-R-BO0-ahl-e-01-0-UI /FEA=EST /CNT=6 /TID=Rn.19716.1 /TIER=ConsEnd /STK=0 /UG=Rn.19716 /UG_TITLE=ESTs AW522671 similar to Nicotinamide riboside kinase 1 LOC499330 499330 NM_001024292 0019363 // pyridine nucleotide biosynthetic process // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050262 // ribosylnicotinamide kinase activity // inferred from electronic annotation 1392995_at BG669396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669396 /DB_XREF=gi:13891318 /DB_XREF=DRNAAF10 /CLONE=DRNAAF10 /FEA=EST /CNT=6 /TID=Rn.16013.1 /TIER=ConsEnd /STK=0 /UG=Rn.16013 /UG_TITLE=ESTs, Weakly similar to RENAL TRANSCRIPTION FACTOR KID-1 (R.norvegicus) BG669396 zinc finger protein 322a Zfp322a 680201 NM_001135084 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1392996_at BG668435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668435 /DB_XREF=gi:13890357 /DB_XREF=DRABXA04 /CLONE=DRABXA04 /FEA=EST /CNT=6 /TID=Rn.14572.1 /TIER=ConsEnd /STK=0 /UG=Rn.14572 /UG_TITLE=ESTs BG668435 cytoplasmic polyadenylation element binding protein 1 Cpeb1 293056 NM_001106276 0006397 // mRNA processing // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006417 // regulation of translation // not recorded /// 0007130 // synaptonemal complex assembly // inferred from electronic annotation /// 0007130 // synaptonemal complex assembly // not recorded /// 0048168 // regulation of neuronal synaptic plasticity // inferred from electronic annotation /// 0048168 // regulation of neuronal synaptic plasticity // not recorded 0000932 // cytoplasmic mRNA processing body // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1392997_at BF556742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556742 /DB_XREF=gi:11666472 /DB_XREF=UI-R-C0-ha-d-02-0-UI.r1 /CLONE=UI-R-C0-ha-d-02-0-UI /FEA=EST /CNT=6 /TID=Rn.6405.1 /TIER=ConsEnd /STK=0 /UG=Rn.6405 /UG_TITLE=ESTs BF556742 protein phosphatase 4, regulatory subunit 2 Ppp4r2 297486 NM_001106613 0005515 // protein binding // not recorded 1392998_at BI294284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294284 /DB_XREF=gi:14956599 /DB_XREF=UI-R-DK0-cea-g-11-0-UI.s1 /CLONE=UI-R-DK0-cea-g-11-0-UI /FEA=EST /CNT=6 /TID=Rn.48066.1 /TIER=ConsEnd /STK=0 /UG=Rn.48066 /UG_TITLE=ESTs BI294284 1392999_at AA819279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819279 /DB_XREF=gi:4228419 /DB_XREF=UI-R-A0-aw-b-06-0-UI.s1 /CLONE=UI-R-A0-aw-b-06-0-UI /FEA=EST /CNT=6 /TID=Rn.17419.1 /TIER=ConsEnd /STK=0 /UG=Rn.17419 /UG_TITLE=ESTs AA819279 neuropilin (NRP) and tolloid (TLL)-like 2 Neto2 307757 NM_001107417 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1393000_at AI045970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045970 /DB_XREF=gi:3290882 /DB_XREF=UI-R-C1-jt-a-10-0-UI.s1 /CLONE=UI-R-C1-jt-a-10-0-UI /FEA=EST /CNT=6 /TID=Rn.15748.1 /TIER=ConsEnd /STK=0 /UG=Rn.15748 /UG_TITLE=ESTs AI045970 1393001_at AI137671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137671 /DB_XREF=gi:3638448 /DB_XREF=UI-R-C0-ho-f-06-0-UI.s1 /CLONE=UI-R-C0-ho-f-06-0-UI /FEA=EST /CNT=6 /TID=Rn.23434.1 /TIER=ConsEnd /STK=0 /UG=Rn.23434 /UG_TITLE=ESTs, Weakly similar to ninein (Mus musculus) (M.musculus) AI137671 ninein (GSK3B interacting protein) Nin 299117 NM_001106737 0005813 // centrosome // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393003_at AA899900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899900 /DB_XREF=gi:4232392 /DB_XREF=UI-R-E0-dh-b-08-0-UI.s1 /CLONE=UI-R-E0-dh-b-08-0-UI /FEA=EST /CNT=6 /TID=Rn.2419.1 /TIER=ConsEnd /STK=0 /UG=Rn.2419 /UG_TITLE=ESTs AA899900 1393004_at BG376529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376529 /DB_XREF=gi:13301001 /DB_XREF=UI-R-CT0-bup-e-11-0-UI.s1 /CLONE=UI-R-CT0-bup-e-11-0-UI /FEA=EST /CNT=6 /TID=Rn.47427.1 /TIER=ConsEnd /STK=0 /UG=Rn.47427 /UG_TITLE=ESTs BG376529 1393005_at AW916965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916965 /DB_XREF=gi:8082704 /DB_XREF=EST348269 /CLONE=RGIDX28 /FEA=EST /CNT=6 /TID=Rn.56136.2 /TIER=ConsEnd /STK=0 /UG=Rn.56136 /UG_TITLE=ESTs AW916965 SFT2 domain containing 2 Sft2d2 360868 NM_001034011 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1393006_at BF282112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282112 /DB_XREF=gi:11213182 /DB_XREF=EST446703 /CLONE=RGIDC15 /FEA=EST /CNT=6 /TID=Rn.23765.2 /TIER=ConsEnd /STK=0 /UG=Rn.23765 /UG_TITLE=ESTs BF282112 1393007_at BF554509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554509 /DB_XREF=gi:11664239 /DB_XREF=UI-R-E1-gg-d-07-0-UI.r1 /CLONE=UI-R-E1-gg-d-07-0-UI /FEA=EST /CNT=6 /TID=Rn.15063.1 /TIER=ConsEnd /STK=0 /UG=Rn.15063 /UG_TITLE=ESTs BF554509 1393008_at BI290317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290317 /DB_XREF=gi:14948776 /DB_XREF=UI-R-DK0-cfu-g-10-0-UI.s1 /CLONE=UI-R-DK0-cfu-g-10-0-UI /FEA=EST /CNT=6 /TID=Rn.8144.1 /TIER=ConsEnd /STK=0 /UG=Rn.8144 /UG_TITLE=ESTs BI290317 1393009_at AI535126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535126 /DB_XREF=gi:4449261 /DB_XREF=UI-R-C3-sp-b-09-0-UI.s1 /CLONE=UI-R-C3-sp-b-09-0-UI /FEA=EST /CNT=6 /TID=Rn.25446.1 /TIER=ConsEnd /STK=0 /UG=Rn.25446 /UG_TITLE=ESTs AI535126 Friend virus susceptibility 1 Fv1 308568 NM_001014018 0009615 // response to virus // not recorded 0005794 // Golgi apparatus // not recorded 1393010_at AI008808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008808 /DB_XREF=gi:3222640 /DB_XREF=EST203259 /CLONE=REMBD57 /FEA=EST /CNT=6 /TID=Rn.23362.2 /TIER=ConsEnd /STK=0 /UG=Rn.23362 /UG_TITLE=ESTs AI008808 1393011_at BE104363 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104363 /DB_XREF=gi:8496463 /DB_XREF=UI-R-BX0-arn-h-12-0-UI.s1 /CLONE=UI-R-BX0-arn-h-12-0-UI /FEA=EST /CNT=6 /TID=Rn.34724.1 /TIER=ConsEnd /STK=0 /UG=Rn.34724 /UG_TITLE=ESTs BE104363 similar to hypothetical protein LOC361041 361041 XM_002725105 /// XM_002728283 1393012_at BI294441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294441 /DB_XREF=gi:14956894 /DB_XREF=UI-R-DK0-cei-h-09-0-UI.s1 /CLONE=UI-R-DK0-cei-h-09-0-UI /FEA=EST /CNT=6 /TID=Rn.19931.1 /TIER=ConsEnd /STK=0 /UG=Rn.19931 /UG_TITLE=ESTs BI294441 Sfi1 homolog, spindle assembly associated (yeast) Sfi1 305467 NM_001191682 /// XM_001063601 /// XM_223587 0005829 // cytosol // not recorded 1393013_at AA875629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875629 /DB_XREF=gi:4231506 /DB_XREF=UI-R-E0-ct-e-11-0-UI.s1 /CLONE=UI-R-E0-ct-e-11-0-UI /FEA=EST /CNT=6 /TID=Rn.2980.1 /TIER=ConsEnd /STK=0 /UG=Rn.2980 /UG_TITLE=ESTs AA875629 1393014_at AA849210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849210 /DB_XREF=gi:2936750 /DB_XREF=EST191977 /CLONE=RMUAC53 /FEA=EST /CNT=6 /TID=Rn.11470.1 /TIER=ConsEnd /STK=0 /UG=Rn.11470 /UG_TITLE=ESTs AA849210 LSM12 homolog (S. cerevisiae) Lsm12 287731 NM_001105843 0005515 // protein binding // not recorded 1393015_at BG375354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375354 /DB_XREF=gi:13299826 /DB_XREF=UI-R-CV1-bsz-d-10-0-UI.s1 /CLONE=UI-R-CV1-bsz-d-10-0-UI /FEA=EST /CNT=6 /TID=Rn.39189.1 /TIER=ConsEnd /STK=0 /UG=Rn.39189 /UG_TITLE=ESTs BG375354 similar to hypothetical protein FLJ14146 RGD1310587 360894 NM_001100857 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1393016_s_at AI177465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177465 /DB_XREF=gi:4134992 /DB_XREF=EST221095 /CLONE=RPLCA28 /FEA=EST /CNT=1 /TID=Rn.37844.2 /TIER=ConsEnd /STK=1 /UG=Rn.37844 /UG_TITLE=ESTs AI177465 SEC3-like 1 (S. cerevisiae) Sec3l1 305287 NM_001024770 1393017_at BG378261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378261 /DB_XREF=gi:13302733 /DB_XREF=UI-R-CV1-bvq-a-03-0-UI.s1 /CLONE=UI-R-CV1-bvq-a-03-0-UI /FEA=EST /CNT=6 /TID=Rn.17241.1 /TIER=ConsEnd /STK=0 /UG=Rn.17241 /UG_TITLE=ESTs, Highly similar to RHOP MOUSE GTP-RHO BINDING PROTEIN 1 (M.musculus) BG378261 rhophilin, Rho GTPase binding protein 1 Rhpn1 300030 XM_001069922 /// XM_002726939 /// XM_002729822 /// XM_216954 0007165 // signal transduction // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded 0005622 // intracellular // inferred from electronic annotation 0005083 // small GTPase regulator activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1393018_at AI071984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071984 /DB_XREF=gi:3398178 /DB_XREF=UI-R-C2-nd-a-03-0-UI.s1 /CLONE=UI-R-C2-nd-a-03-0-UI /FEA=EST /CNT=6 /TID=Rn.19937.1 /TIER=ConsEnd /STK=0 /UG=Rn.19937 /UG_TITLE=ESTs AI071984 1393019_at BG372243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372243 /DB_XREF=gi:13268780 /DB_XREF=UI-R-CV0-bro-b-10-0-UI.s1 /CLONE=UI-R-CV0-bro-b-10-0-UI /FEA=EST /CNT=6 /TID=Rn.20287.1 /TIER=ConsEnd /STK=0 /UG=Rn.20287 /UG_TITLE=ESTs BG372243 1393020_at BE115368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115368 /DB_XREF=gi:8507473 /DB_XREF=UI-R-BJ1-avr-e-12-0-UI.s1 /CLONE=UI-R-BJ1-avr-e-12-0-UI /FEA=EST /CNT=6 /TID=Rn.38179.1 /TIER=ConsEnd /STK=0 /UG=Rn.38179 /UG_TITLE=ESTs BE115368 hypothetical protein LOC100361631 LOC100361631 100361631 XM_002726625 /// XM_002729531 1393021_at BE113061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113061 /DB_XREF=gi:8505166 /DB_XREF=UI-R-BJ1-awf-h-09-0-UI.s1 /CLONE=UI-R-BJ1-awf-h-09-0-UI /FEA=EST /CNT=6 /TID=Rn.48920.1 /TIER=ConsEnd /STK=0 /UG=Rn.48920 /UG_TITLE=ESTs BE113061 1393022_at BG380737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380737 /DB_XREF=gi:13305209 /DB_XREF=UI-R-CT0-bua-h-02-0-UI.s1 /CLONE=UI-R-CT0-bua-h-02-0-UI /FEA=EST /CNT=6 /TID=Rn.15704.1 /TIER=ConsEnd /STK=0 /UG=Rn.15704 /UG_TITLE=ESTs, Weakly similar to C18F10.7.p (Caenorhabditis elegans) (C.elegans) BG380737 ankyrin repeat domain 13 family, member D Ankrd13d 361699 NM_001108514 1393023_at AA997035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997035 /DB_XREF=gi:4280798 /DB_XREF=UI-R-C0-hk-b-02-0-UI.s1 /CLONE=UI-R-C0-hk-b-02-0-UI /FEA=EST /CNT=6 /TID=Rn.12971.1 /TIER=ConsEnd /STK=0 /UG=Rn.12971 /UG_TITLE=ESTs AA997035 1393024_at BI300589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300589 /DB_XREF=gi:14976869 /DB_XREF=UI-R-CV2-cim-g-02-0-UI.s1 /CLONE=UI-R-CV2-cim-g-02-0-UI /FEA=EST /CNT=6 /TID=Rn.33190.1 /TIER=ConsEnd /STK=0 /UG=Rn.33190 /UG_TITLE=ESTs BI300589 1393025_at BI297354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297354 /DB_XREF=gi:14962652 /DB_XREF=UI-R-CV2-cgx-d-09-0-UI.s1 /CLONE=UI-R-CV2-cgx-d-09-0-UI /FEA=EST /CNT=6 /TID=Rn.18929.1 /TIER=ConsEnd /STK=0 /UG=Rn.18929 /UG_TITLE=ESTs, Moderately similar to PRRC RAT PLACENTAL PROLACTIN-LIKE PROTEIN C PRECURSOR (R.norvegicus) BI297354 1393026_at BI289531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289531 /DB_XREF=gi:14947199 /DB_XREF=UI-R-DK0-cff-b-08-0-UI.s1 /CLONE=UI-R-DK0-cff-b-08-0-UI /FEA=EST /CNT=6 /TID=Rn.9397.1 /TIER=ConsEnd /STK=0 /UG=Rn.9397 /UG_TITLE=ESTs, Moderately similar to RNP RAT RIBONUCLEASE PANCREATIC PRECURSOR (R.norvegicus) BI289531 ribonuclease, RNase A family, 1 (pancreatic) Rnase1 364304 NM_001029904 0005576 // extracellular region // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004522 // pancreatic ribonuclease activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1393027_at AI058848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058848 /DB_XREF=gi:3332625 /DB_XREF=UI-R-C1-jy-h-02-0-UI.s2 /CLONE=UI-R-C1-jy-h-02-0-UI /FEA=EST /CNT=6 /TID=Rn.30198.1 /TIER=ConsEnd /STK=0 /UG=Rn.30198 /UG_TITLE=ESTs, Weakly similar to T21593 hypothetical protein F31D4.2 - Caenorhabditis elegans (C.elegans) AI058848 similar to RIKEN cDNA 1700052N19 RGD1305235 292267 NM_001017447 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393028_at BM383152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383152 /DB_XREF=gi:18183205 /DB_XREF=UI-R-DS0-cje-j-22-0-UI.s1 /CLONE=UI-R-DS0-cje-j-22-0-UI /FEA=EST /CNT=6 /TID=Rn.12356.1 /TIER=ConsEnd /STK=0 /UG=Rn.12356 /UG_TITLE=ESTs BM383152 1393029_at BF410771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410771 /DB_XREF=gi:11398746 /DB_XREF=UI-R-CA0-bmc-g-12-0-UI.s1 /CLONE=UI-R-CA0-bmc-g-12-0-UI /FEA=EST /CNT=6 /TID=Rn.22432.1 /TIER=ConsEnd /STK=0 /UG=Rn.22432 /UG_TITLE=ESTs BF410771 1393030_at BE115641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115641 /DB_XREF=gi:8507746 /DB_XREF=UI-R-BJ1-avy-c-06-0-UI.s1 /CLONE=UI-R-BJ1-avy-c-06-0-UI /FEA=EST /CNT=6 /TID=Rn.13284.1 /TIER=ConsEnd /STK=0 /UG=Rn.13284 /UG_TITLE=ESTs BE115641 hypothetical protein LOC683963 /// similar to Myosin-9B (Myosin IXb) (Unconventional myosin-9b) /// hypothetical protein LOC691692 LOC683963 /// LOC691401 /// LOC691692 683963 /// 691401 /// 691692 XM_001068237 /// XM_001078077 /// XM_001079285 0016459 // myosin complex // inferred from electronic annotation 0003774 // motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1393031_at BI297075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297075 /DB_XREF=gi:14962128 /DB_XREF=UI-R-DK0-cdt-a-05-0-UI.s1 /CLONE=UI-R-DK0-cdt-a-05-0-UI /FEA=EST /CNT=6 /TID=Rn.25097.1 /TIER=ConsEnd /STK=0 /UG=Rn.25097 /UG_TITLE=ESTs BI297075 histo-blood group ABO system transferase 2 Abo2 100301568 NM_001160263 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0004380 // glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0004381 // fucosylgalactoside 3-alpha-galactosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393032_x_at BI290033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290033 /DB_XREF=gi:14948219 /DB_XREF=UI-R-DK0-cfr-a-09-0-UI.s1 /CLONE=UI-R-DK0-cfr-a-09-0-UI /FEA=EST /CNT=6 /TID=Rn.36074.2 /TIER=ConsEnd /STK=0 /UG=Rn.36074 /UG_TITLE=ESTs BI290033 RAB, member RAS oncogene family-like 5 Rabl5 288585 NM_001011902 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1393033_at BG669575 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669575 /DB_XREF=gi:13891497 /DB_XREF=DRNAAGH01 /CLONE=DRNAAGH01 /FEA=EST /CNT=6 /TID=Rn.42794.2 /TIER=ConsEnd /STK=0 /UG=Rn.42794 /UG_TITLE=ESTs, Weakly similar to T30021 hypothetical protein K08F11.4 - Caenorhabditis elegans (C.elegans) BG669575 tyrosyl-tRNA synthetase 2 (mitochondrial) Yars2 287924 NM_001009627 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006437 // tyrosyl-tRNA aminoacylation // inferred from electronic annotation /// 0030155 // regulation of cell adhesion // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005938 // cell cortex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004831 // tyrosine-tRNA ligase activity // inferred from electronic annotation /// 0004831 // tyrosine-tRNA ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1393034_at BI292899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292899 /DB_XREF=gi:14953870 /DB_XREF=UI-R-DO0-cix-p-01-0-UI.s1 /CLONE=UI-R-DO0-cix-p-01-0-UI /FEA=EST /CNT=6 /TID=Rn.11747.1 /TIER=ConsEnd /STK=0 /UG=Rn.11747 /UG_TITLE=ESTs BI292899 Similar to tyrosine kinase-associated leucine zipper protein LAZipII RGD1565584 293112 NM_001106279 0006350 // transcription // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0009615 // response to virus // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0045814 // negative regulation of gene expression, epigenetic // not recorded /// 0051090 // regulation of transcription factor activity // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1393035_at AI502529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502529 /DB_XREF=gi:4400380 /DB_XREF=UI-R-C2-nd-e-04-0-UI.s1 /CLONE=UI-R-C2-nd-e-04-0-UI /FEA=EST /CNT=6 /TID=Rn.35436.1 /TIER=ConsEnd /STK=0 /UG=Rn.35436 /UG_TITLE=ESTs AI502529 1393036_at AI044340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044340 /DB_XREF=gi:3291243 /DB_XREF=UI-R-C0-is-a-10-0-UI.s1 /CLONE=UI-R-C0-is-a-10-0-UI /FEA=EST /CNT=6 /TID=Rn.12752.1 /TIER=ConsEnd /STK=0 /UG=Rn.12752 /UG_TITLE=ESTs AI044340 proline/serine-rich coiled-coil 1 Psrc1 691380 NM_001044302 0001578 // microtubule bundle formation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007080 // mitotic metaphase plate congression // not recorded /// 0007080 // mitotic metaphase plate congression // inferred from sequence or structural similarity /// 0007080 // mitotic metaphase plate congression // inferred from electronic annotation /// 0009987 // cellular process // not recorded /// 0009987 // cellular process // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0031116 // positive regulation of microtubule polymerization // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0060236 // regulation of mitotic spindle organization // not recorded /// 0060236 // regulation of mitotic spindle organization // inferred from sequence or structural similarity /// 0060236 // regulation of mitotic spindle organization // inferred from electronic annotation 0000922 // spindle pole // not recorded /// 0000922 // spindle pole // inferred from sequence or structural similarity /// 0000922 // spindle pole // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded /// 0005876 // spindle microtubule // inferred from sequence or structural similarity /// 0005876 // spindle microtubule // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0030496 // midbody // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // inferred from electronic annotation 1393037_at BG373089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373089 /DB_XREF=gi:13269626 /DB_XREF=UI-R-CV1-bsf-d-05-0-UI.s1 /CLONE=UI-R-CV1-bsf-d-05-0-UI /FEA=EST /CNT=6 /TID=Rn.7595.1 /TIER=ConsEnd /STK=0 /UG=Rn.7595 /UG_TITLE=ESTs BG373089 1393038_at BM391631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391631 /DB_XREF=gi:18191684 /DB_XREF=UI-R-CN1-cjs-c-22-0-UI.s1 /CLONE=UI-R-CN1-cjs-c-22-0-UI /FEA=EST /CNT=6 /TID=Rn.16643.1 /TIER=ConsEnd /STK=0 /UG=Rn.16643 /UG_TITLE=ESTs, Weakly similar to FCG3 RAT LOW AFFINITY IMMUNOGLOBULIN GAMMA FC REGION RECEPTOR III PRECURSOR (R.norvegicus) BM391631 Fc fragment of IgG, high affinity Ia, receptor (CD64) Fcgr1a 295279 NM_001100836 0001788 // antibody-dependent cellular cytotoxicity // inferred from electronic annotation /// 0001788 // antibody-dependent cellular cytotoxicity // not recorded /// 0001798 // positive regulation of type IIa hypersensitivity // inferred from electronic annotation /// 0001798 // positive regulation of type IIa hypersensitivity // not recorded /// 0001805 // positive regulation of type III hypersensitivity // inferred from electronic annotation /// 0001805 // positive regulation of type III hypersensitivity // not recorded /// 0006898 // receptor-mediated endocytosis // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // not recorded /// 0006910 // phagocytosis, recognition // inferred from electronic annotation /// 0006910 // phagocytosis, recognition // not recorded /// 0006911 // phagocytosis, engulfment // inferred from electronic annotation /// 0006911 // phagocytosis, engulfment // not recorded /// 0007165 // signal transduction // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0009617 // response to bacterium // not recorded /// 0009617 // response to bacterium // inferred from electronic annotation /// 0019884 // antigen processing and presentation of exogenous antigen // inferred from electronic annotation /// 0019884 // antigen processing and presentation of exogenous antigen // not recorded /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // inferred from electronic annotation /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // not recorded /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0042742 // defense response to bacterium // not recorded /// 0050766 // positive regulation of phagocytosis // inferred from electronic annotation /// 0050766 // positive regulation of phagocytosis // not recorded /// 0050776 // regulation of immune response // inferred from electronic annotation /// 0050776 // regulation of immune response // not recorded 0005886 // plasma membrane // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019770 // IgG receptor activity // inferred from electronic annotation /// 0019770 // IgG receptor activity // not recorded /// 0019864 // IgG binding // not recorded /// 0019864 // IgG binding // inferred from electronic annotation 1393039_a_at AI547691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547691 /DB_XREF=gi:4465179 /DB_XREF=UI-R-C3-th-c-02-0-UI.s1 /CLONE=UI-R-C3-th-c-02-0-UI /FEA=EST /CNT=6 /TID=Rn.24214.1 /TIER=ConsEnd /STK=0 /UG=Rn.24214 /UG_TITLE=ESTs, Moderately similar to RB17 MOUSE RAS-RELATED PROTEIN RAB-17 (M.musculus) AI547691 RAB17, member RAS oncogene family Rab17 503269 NM_001109363 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1393040_at BE097656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097656 /DB_XREF=gi:8488587 /DB_XREF=UI-R-BO1-aqa-b-12-0-UI.s1 /CLONE=UI-R-BO1-aqa-b-12-0-UI /FEA=EST /CNT=6 /TID=Rn.24657.1 /TIER=ConsEnd /STK=0 /UG=Rn.24657 /UG_TITLE=ESTs BE097656 1393041_at AW535052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535052 /DB_XREF=gi:7177466 /DB_XREF=UI-R-BS0-aoa-f-10-0-UI.s1 /CLONE=UI-R-BS0-aoa-f-10-0-UI /FEA=EST /CNT=6 /TID=Rn.7890.1 /TIER=ConsEnd /STK=0 /UG=Rn.7890 /UG_TITLE=ESTs AW535052 structural maintenance of chromosomes 2 Smc2 362519 NM_001108666 0007076 // mitotic chromosome condensation // not recorded /// 0044403 // symbiosis, encompassing mutualism through parasitism // not recorded /// 0051276 // chromosome organization // inferred from electronic annotation 0000228 // nuclear chromosome // not recorded /// 0000793 // condensed chromosome // not recorded /// 0000796 // condensin complex // not recorded /// 0005634 // nucleus // not recorded /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1393042_at BI288780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288780 /DB_XREF=gi:14945688 /DB_XREF=UI-R-DK0-cde-g-12-0-UI.s1 /CLONE=UI-R-DK0-cde-g-12-0-UI /FEA=EST /CNT=6 /TID=Rn.7064.2 /TIER=ConsEnd /STK=0 /UG=Rn.7064 /UG_TITLE=ESTs BI288780 Ubiquitin specific peptidase 7 (herpes virus-associated) Usp7 360471 NM_001024790 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016579 // protein deubiquitination // inferred from direct assay /// 0016579 // protein deubiquitination // not recorded /// 0016579 // protein deubiquitination // inferred from sequence or structural similarity /// 0031647 // regulation of protein stability // inferred from direct assay /// 0051090 // regulation of transcription factor activity // not recorded /// 0051090 // regulation of transcription factor activity // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0002039 // p53 binding // not recorded /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0004221 // ubiquitin thiolesterase activity // inferred from sequence or structural similarity /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0004843 // ubiquitin-specific protease activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay 1393043_at BM391844 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391844 /DB_XREF=gi:18191897 /DB_XREF=UI-R-DO1-cmk-h-02-0-UI.s1 /CLONE=UI-R-DO1-cmk-h-02-0-UI /FEA=EST /CNT=12 /TID=Rn.52378.1 /TIER=ConsEnd /STK=0 /UG=Rn.52378 /UG_TITLE=ESTs, Moderately similar to CG48_HUMAN Hypothetical WD-repeat protein CGI-48 (H.sapiens) BM391844 UTP18, small subunit (SSU) processome component, homolog (yeast) Utp18 303456 NM_001135039 0005634 // nucleus // not recorded 1393044_at BF282370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282370 /DB_XREF=gi:11213352 /DB_XREF=EST446873 /CLONE=RGIDI74 /FEA=EST /CNT=9 /TID=Rn.20032.2 /TIER=ConsEnd /STK=0 /UG=Rn.20032 /UG_TITLE=ESTs BF282370 cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial Cmpk2 314004 NM_001108017 0006233 // dTDP biosynthetic process // inferred from electronic annotation /// 0071222 // cellular response to lipopolysaccharide // not recorded 0005739 // mitochondrion // not recorded 0004127 // cytidylate kinase activity // not recorded /// 0004798 // thymidylate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0033862 // UMP kinase activity // not recorded 1393045_at BF556405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556405 /DB_XREF=gi:11666093 /DB_XREF=UI-R-A1-eq-a-08-0-UI.r1 /CLONE=UI-R-A1-eq-a-08-0-UI /FEA=EST /CNT=8 /TID=Rn.22699.1 /TIER=ConsEnd /STK=0 /UG=Rn.22699 /UG_TITLE=ESTs BF556405 1393046_at AI709474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709474 /DB_XREF=gi:4999250 /DB_XREF=UI-R-C3-ss-g-01-0-UI.s1 /CLONE=UI-R-C3-ss-g-01-0-UI /FEA=EST /CNT=8 /TID=Rn.28993.1 /TIER=ConsEnd /STK=0 /UG=Rn.28993 /UG_TITLE=ESTs AI709474 similar to Protein C20orf20 RGD1308612 311713 NM_001173739 /// XM_001059141 /// XM_001074536 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 1393047_at BF416560 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416560 /DB_XREF=gi:11404549 /DB_XREF=UI-R-CA1-bkt-a-12-0-UI.s1 /CLONE=UI-R-CA1-bkt-a-12-0-UI /FEA=EST /CNT=7 /TID=Rn.9080.1 /TIER=ConsEnd /STK=0 /UG=Rn.9080 /UG_TITLE=ESTs BF416560 ring finger protein 217 Rnf217 292188 NM_001106204 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393048_at BF561277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561277 /DB_XREF=gi:11671007 /DB_XREF=UI-R-C0-hl-c-03-0-UI.r1 /CLONE=UI-R-C0-hl-c-03-0-UI /FEA=EST /CNT=7 /TID=Rn.23432.1 /TIER=ConsEnd /STK=0 /UG=Rn.23432 /UG_TITLE=ESTs BF561277 1393049_at BF417582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417582 /DB_XREF=gi:11405571 /DB_XREF=UI-R-CN0-blp-g-08-0-UI.s1 /CLONE=UI-R-CN0-blp-g-08-0-UI /FEA=EST /CNT=7 /TID=Rn.16203.1 /TIER=ConsEnd /STK=0 /UG=Rn.16203 /UG_TITLE=ESTs, Weakly similar to A53933 myosin I myr 4 - rat (R.norvegicus) BF417582 myosin IG Myo1g 289785 NM_001134843 0016459 // myosin complex // inferred from electronic annotation 0003774 // motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1393050_at BG664069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664069 /DB_XREF=gi:13885991 /DB_XREF=DRAACF03 /CLONE=DRAACF03 /FEA=EST /CNT=7 /TID=Rn.11727.2 /TIER=ConsEnd /STK=0 /UG=Rn.11727 /UG_TITLE=ESTs BG664069 hypothetical LOC302495 LOC302495 302495 NM_001106950 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1393051_at BF551457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551457 /DB_XREF=gi:11661187 /DB_XREF=UI-R-C0-iq-e-01-0-UI.r1 /CLONE=UI-R-C0-iq-e-01-0-UI /FEA=EST /CNT=7 /TID=Rn.18191.1 /TIER=ConsEnd /STK=0 /UG=Rn.18191 /UG_TITLE=ESTs, Weakly similar to T00084 hypothetical protein KIAA0512 (H.sapiens) BF551457 armadillo repeat containing, X-linked 1 Armcx1 501619 NM_001024367 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1393052_at BM392406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392406 /DB_XREF=gi:18192459 /DB_XREF=UI-R-EB1-clf-i-20-0-UI.s1 /CLONE=UI-R-EB1-clf-i-20-0-UI /FEA=EST /CNT=7 /TID=Rn.35033.1 /TIER=ConsEnd /STK=0 /UG=Rn.35033 /UG_TITLE=ESTs BM392406 1393053_at AI179443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179443 /DB_XREF=gi:3730081 /DB_XREF=EST223153 /CLONE=RSPCH41 /FEA=EST /CNT=6 /TID=Rn.29300.1 /TIER=ConsEnd /STK=0 /UG=Rn.29300 /UG_TITLE=ESTs AI179443 mannosidase, alpha, class 1C, member 1 Man1c1 362625 NM_001108687 0016020 // membrane // inferred from electronic annotation 0004571 // mannosyl-oligosaccharide 1,2-alpha-mannosidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1393054_at AI070118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070118 /DB_XREF=gi:3396369 /DB_XREF=UI-R-Y0-lu-c-07-0-UI.s1 /CLONE=UI-R-Y0-lu-c-07-0-UI /FEA=EST /CNT=6 /TID=Rn.19982.1 /TIER=ConsEnd /STK=0 /UG=Rn.19982 /UG_TITLE=ESTs AI070118 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0051020 // GTPase binding // inferred from electronic annotation 1393055_at BF525244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF525244 /DB_XREF=gi:11633211 /DB_XREF=UI-R-AC0-ym-h-09-0-UI.r1 /CLONE=UI-R-AC0-ym-h-09-0-UI /FEA=EST /CNT=6 /TID=Rn.64088.1 /TIER=ConsEnd /STK=0 /UG=Rn.64088 /UG_TITLE=ESTs, Highly similar to PKL2 RAT PROTEIN KINASE C-LIKE 2 (R.norvegicus) BF525244 protein kinase N2 Pkn2 207122 NM_001105755 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded /// 0042826 // histone deacetylase binding // inferred from sequence or structural similarity /// 0042826 // histone deacetylase binding // inferred from electronic annotation 1393056_at AI763722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763722 /DB_XREF=gi:5209657 /DB_XREF=UI-R-Y0-acn-c-09-0-UI.s1 /CLONE=UI-R-Y0-acn-c-09-0-UI /FEA=EST /CNT=6 /TID=Rn.20656.1 /TIER=ConsEnd /STK=0 /UG=Rn.20656 /UG_TITLE=ESTs AI763722 1393057_at BF404098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404098 /DB_XREF=gi:11392073 /DB_XREF=UI-R-CA1-biw-l-19-0-UI.s1 /CLONE=UI-R-CA1-biw-l-19-0-UI /FEA=EST /CNT=6 /TID=Rn.25316.1 /TIER=ConsEnd /STK=0 /UG=Rn.25316 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) BF404098 zinc finger protein 772 Zfp772 308320 NM_001107472 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393058_at BE101947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101947 /DB_XREF=gi:8494045 /DB_XREF=UI-R-BT1-aqi-d-07-0-UI.s1 /CLONE=UI-R-BT1-aqi-d-07-0-UI /FEA=EST /CNT=6 /TID=Rn.53893.1 /TIER=ConsEnd /STK=0 /UG=Rn.53893 /UG_TITLE=ESTs BE101947 EP300 interacting inhibitor of differentiation 2 Eid2 685691 XM_001064863 /// XM_002725554 0007181 // transforming growth factor beta receptor complex assembly // not recorded /// 0007183 // SMAD protein complex assembly // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0017015 // regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0042127 // regulation of cell proliferation // not recorded 0005515 // protein binding // not recorded /// 0046332 // SMAD binding // not recorded 1393059_at AI137360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137360 /DB_XREF=gi:3638137 /DB_XREF=UI-R-C2p-og-d-07-0-UI.s1 /CLONE=UI-R-C2p-og-d-07-0-UI /FEA=EST /CNT=6 /TID=Rn.24086.1 /TIER=ConsEnd /STK=0 /UG=Rn.24086 /UG_TITLE=ESTs AI137360 zinc finger protein 799 Zfp799 494339 NM_001009537 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393060_at AI059694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059694 /DB_XREF=gi:3333471 /DB_XREF=UI-R-C1-lg-g-09-0-UI.s1 /CLONE=UI-R-C1-lg-g-09-0-UI /FEA=EST /CNT=6 /TID=Rn.19250.1 /TIER=ConsEnd /STK=0 /UG=Rn.19250 /UG_TITLE=ESTs, Highly similar to T00260 hypothetical protein KIAA0605 (H.sapiens) AI059694 ADAMTS-like 2 Adamtsl2 311827 XM_001078833 /// XM_231125 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1393061_at AI030103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030103 /DB_XREF=gi:3247929 /DB_XREF=UI-R-C0-iz-c-07-0-UI.s1 /CLONE=UI-R-C0-iz-c-07-0-UI /FEA=EST /CNT=6 /TID=Rn.3482.1 /TIER=ConsEnd /STK=0 /UG=Rn.3482 /UG_TITLE=ESTs, Weakly similar to F52H3.5.p (Caenorhabditis elegans) (C.elegans) AI030103 tetratricopeptide repeat domain 36 Ttc36 300676 NM_001005546 0005488 // binding // inferred from electronic annotation 1393062_at BI275419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275419 /DB_XREF=gi:14887256 /DB_XREF=UI-R-CX0-bww-c-07-0-UI.s1 /CLONE=UI-R-CX0-bww-c-07-0-UI /FEA=EST /CNT=6 /TID=Rn.14752.1 /TIER=ConsEnd /STK=0 /UG=Rn.14752 /UG_TITLE=ESTs BI275419 1393063_at BF409007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409007 /DB_XREF=gi:11396982 /DB_XREF=UI-R-BJ2-bpn-h-11-0-UI.s1 /CLONE=UI-R-BJ2-bpn-h-11-0-UI /FEA=EST /CNT=6 /TID=Rn.46300.1 /TIER=ConsEnd /STK=0 /UG=Rn.46300 /UG_TITLE=ESTs BF409007 eukaryotic translation initiation factor 5A2 Eif5a2 310261 NM_001100697 /// XM_001063995 /// XM_226974 0006452 // translational frameshifting // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008612 // peptidyl-lysine modification to hypusine // inferred from electronic annotation /// 0008612 // peptidyl-lysine modification to hypusine // not recorded /// 0045901 // positive regulation of translational elongation // inferred from electronic annotation /// 0045905 // positive regulation of translational termination // inferred from electronic annotation 0005829 // cytosol // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043022 // ribosome binding // inferred from electronic annotation 1393064_at AI709766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709766 /DB_XREF=gi:4999542 /DB_XREF=UI-R-C3-tj-c-12-0-UI.s1 /CLONE=UI-R-C3-tj-c-12-0-UI /FEA=EST /CNT=6 /TID=Rn.22807.1 /TIER=ConsEnd /STK=0 /UG=Rn.22807 /UG_TITLE=ESTs AI709766 1393065_at BI276770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276770 /DB_XREF=gi:14921999 /DB_XREF=UI-R-CX0-bxl-c-09-0-UI.s1 /CLONE=UI-R-CX0-bxl-c-09-0-UI /FEA=EST /CNT=6 /TID=Rn.48856.1 /TIER=ConsEnd /STK=0 /UG=Rn.48856 /UG_TITLE=ESTs BI276770 similar to KIAA0406-like protein RGD1562582 499935 NM_001134619 0005488 // binding // inferred from electronic annotation 1393066_at AI070787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070787 /DB_XREF=gi:3397038 /DB_XREF=UI-R-C2-mr-c-12-0-UI.s1 /CLONE=UI-R-C2-mr-c-12-0-UI /FEA=EST /CNT=6 /TID=Rn.7647.1 /TIER=ConsEnd /STK=0 /UG=Rn.7647 /UG_TITLE=ESTs AI070787 1393067_at AI710931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI710931 /DB_XREF=gi:5000707 /DB_XREF=UI-R-AE1-zj-a-09-0-UI.s1 /CLONE=UI-R-AE1-zj-a-09-0-UI /FEA=EST /CNT=6 /TID=Rn.9159.1 /TIER=ConsEnd /STK=0 /UG=Rn.9159 /UG_TITLE=ESTs AI710931 TEK tyrosine kinase, endothelial Tek 89804 NM_001105737 0001525 // angiogenesis // inferred from expression pattern /// 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // traceable author statement /// 0001570 // vasculogenesis // traceable author statement /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001958 // endochondral ossification // inferred from expression pattern /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0007160 // cell-matrix adhesion // not recorded /// 0007165 // signal transduction // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from expression pattern /// 0016337 // cell-cell adhesion // not recorded /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0030097 // hemopoiesis // not recorded /// 0030334 // regulation of cell migration // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0032526 // response to retinoic acid // not recorded /// 0033138 // positive regulation of peptidyl-serine phosphorylation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0045765 // regulation of angiogenesis // not recorded /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0045766 // positive regulation of angiogenesis // traceable author statement /// 0045785 // positive regulation of cell adhesion // not recorded /// 0048014 // Tie receptor signaling pathway // traceable author statement /// 0051259 // protein oligomerization // not recorded /// 0051591 // response to cAMP // inferred from expression pattern /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005902 // microvillus // not recorded /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016324 // apical plasma membrane // not recorded /// 0045121 // membrane raft // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004716 // receptor signaling protein tyrosine kinase activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from physical interaction 1393068_at AA956927 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956927 /DB_XREF=gi:4239401 /DB_XREF=UI-R-E1-fl-a-07-0-UI.s1 /CLONE=UI-R-E1-fl-a-07-0-UI /FEA=EST /CNT=6 /TID=Rn.9132.1 /TIER=ConsEnd /STK=0 /UG=Rn.9132 /UG_TITLE=ESTs AA956927 1393069_at AA899309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899309 /DB_XREF=gi:4231807 /DB_XREF=UI-R-E0-cz-a-12-0-UI.s1 /CLONE=UI-R-E0-cz-a-12-0-UI /FEA=EST /CNT=6 /TID=Rn.40184.1 /TIER=ConsEnd /STK=0 /UG=Rn.40184 /UG_TITLE=ESTs AA899309 secreted frizzled-related protein 5 Sfrp5 309377 NM_001107591 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0035121 // tail morphogenesis // not recorded /// 0043508 // negative regulation of JUN kinase activity // not recorded /// 0048546 // digestive tract morphogenesis // not recorded /// 0060028 // convergent extension involved in axis elongation // not recorded /// 0090175 // regulation of establishment of planar polarity // not recorded 0005515 // protein binding // inferred from electronic annotation 1393070_at BE118406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118406 /DB_XREF=gi:8510511 /DB_XREF=UI-R-BJ1-azp-c-05-0-UI.s1 /CLONE=UI-R-BJ1-azp-c-05-0-UI /FEA=EST /CNT=6 /TID=Rn.15274.1 /TIER=ConsEnd /STK=0 /UG=Rn.15274 /UG_TITLE=ESTs, Weakly similar to Y193_HUMAN HYPOTHETICAL PROTEIN KIAA0193 (H.sapiens) BE118406 secernin 2 Scrn2 360612 NM_001012142 0006508 // proteolysis // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0016805 // dipeptidase activity // inferred from electronic annotation 1393071_at BG372018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372018 /DB_XREF=gi:13268555 /DB_XREF=UI-R-CV0-brl-c-08-0-UI.s1 /CLONE=UI-R-CV0-brl-c-08-0-UI /FEA=EST /CNT=6 /TID=Rn.254.1 /TIER=ConsEnd /STK=0 /UG=Rn.254 /UG_TITLE=ESTs, Moderately similar to TUB RAT TUBBY PROTEIN HOMOLOG (R.norvegicus) BG372018 tubby like protein 1 Tulp1 309900 NM_001107642 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007602 // phototransduction // not recorded /// 0009584 // detection of visible light // not recorded /// 0016358 // dendrite development // not recorded /// 0042462 // eye photoreceptor cell development // not recorded /// 0045494 // photoreceptor cell maintenance // not recorded /// 0050766 // positive regulation of phagocytosis // not recorded 0001750 // photoreceptor outer segment // not recorded /// 0001917 // photoreceptor inner segment // not recorded /// 0005886 // plasma membrane // not recorded /// 0042995 // cell projection // not recorded /// 0045202 // synapse // not recorded 0005515 // protein binding // not recorded /// 0005546 // phosphatidylinositol-4,5-bisphosphate binding // not recorded /// 0008020 // G-protein coupled photoreceptor activity // not recorded /// 0051015 // actin filament binding // not recorded 1393072_at H32128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H32128 /DB_XREF=gi:977545 /DB_XREF=EST106939 /FEA=EST /CNT=6 /TID=Rn.19628.1 /TIER=ConsEnd /STK=0 /UG=Rn.19628 /UG_TITLE=ESTs, Weakly similar to F25H2.8.p (Caenorhabditis elegans) (C.elegans) H32128 ubiquitin-conjugating enzyme E2Q family member 2 Ube2q2 363065 XM_001072896 /// XM_002729905 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1393073_at AI030539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030539 /DB_XREF=gi:3248365 /DB_XREF=UI-R-C0-ji-f-01-0-UI.s1 /CLONE=UI-R-C0-ji-f-01-0-UI /FEA=EST /CNT=6 /TID=Rn.8011.1 /TIER=ConsEnd /STK=0 /UG=Rn.8011 /UG_TITLE=ESTs, Weakly similar to 60S RIBOSOMAL PROTEIN L26 (R.norvegicus) AI030539 1393074_at BF406819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406819 /DB_XREF=gi:11394794 /DB_XREF=UI-R-BJ2-bpp-e-02-0-UI.s1 /CLONE=UI-R-BJ2-bpp-e-02-0-UI /FEA=EST /CNT=6 /TID=Rn.9381.1 /TIER=ConsEnd /STK=0 /UG=Rn.9381 /UG_TITLE=ESTs BF406819 similar to hypothetical protein FLJ38984 RGD1563072 313595 NM_001107981 1393075_at BF386199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386199 /DB_XREF=gi:11371023 /DB_XREF=UI-R-CA1-bbb-g-03-0-UI.s1 /CLONE=UI-R-CA1-bbb-g-03-0-UI /FEA=EST /CNT=6 /TID=Rn.43248.1 /TIER=ConsEnd /STK=0 /UG=Rn.43248 /UG_TITLE=ESTs BF386199 1393076_at AW918759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918759 /DB_XREF=gi:8084544 /DB_XREF=EST350063 /CLONE=RGIEX64 /FEA=EST /CNT=5 /TID=Rn.21188.1 /TIER=ConsEnd /STK=0 /UG=Rn.21188 /UG_TITLE=ESTs AW918759 vacuolar protein sorting 13 homolog D (S. cerevisiae) Vps13d 313825 NM_001108006 0008104 // protein localization // inferred from electronic annotation 1393077_at AA925179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925179 /DB_XREF=gi:4236370 /DB_XREF=UI-R-A1-ef-f-01-0-UI.s1 /CLONE=UI-R-A1-ef-f-01-0-UI /FEA=EST /CNT=5 /TID=Rn.21469.1 /TIER=ConsEnd /STK=0 /UG=Rn.21469 /UG_TITLE=ESTs AA925179 1393078_at BG671648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671648 /DB_XREF=gi:13893747 /DB_XREF=DRNBWA09 /CLONE=DRNBWA09 /FEA=EST /CNT=5 /TID=Rn.8207.1 /TIER=ConsEnd /STK=0 /UG=Rn.8207 /UG_TITLE=ESTs BG671648 NMDA receptor regulated 1 Narg1 310399 NM_001107674 0006474 // N-terminal protein amino acid acetylation // not recorded /// 0008152 // metabolic process // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008080 // N-acetyltransferase activity // not recorded /// 0016407 // acetyltransferase activity // not recorded /// 0043022 // ribosome binding // not recorded 1393079_at AI111605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111605 /DB_XREF=gi:3511332 /DB_XREF=UI-R-C2-nm-e-05-0-UI.s2 /CLONE=UI-R-C2-nm-e-05-0-UI /FEA=EST /CNT=5 /TID=Rn.21775.1 /TIER=ConsEnd /STK=0 /UG=Rn.21775 /UG_TITLE=ESTs, Weakly similar to T46250 hypothetical protein DKFZp761A051.1 (H.sapiens) AI111605 sialic acid acetylesterase Siae 363045 NM_001108759 0005764 // lysosome // inferred from electronic annotation 0001681 // sialate O-acetylesterase activity // inferred from electronic annotation /// 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1393080_at BF389264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389264 /DB_XREF=gi:11374094 /DB_XREF=UI-R-BS2-bdi-g-05-0-UI.s1 /CLONE=UI-R-BS2-bdi-g-05-0-UI /FEA=EST /CNT=5 /TID=Rn.56913.1 /TIER=ConsEnd /STK=0 /UG=Rn.56913 /UG_TITLE=ESTs, Highly similar to zinc finger RNA binding protein (Mus musculus) (M.musculus) BF389264 zinc finger RNA binding protein Zfr 365703 XM_001056210 /// XM_345169 0007275 // multicellular organismal development // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1393081_at AI145237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145237 /DB_XREF=gi:3667036 /DB_XREF=UI-R-BT0-qf-c-01-0-UI.s1 /CLONE=UI-R-BT0-qf-c-01-0-UI /FEA=EST /CNT=5 /TID=Rn.29825.1 /TIER=ConsEnd /STK=0 /UG=Rn.29825 /UG_TITLE=ESTs AI145237 RasGEF domain family, member 1A Rasgef1a 312664 XM_001077186 /// XM_232315 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1393082_at AI044747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044747 /DB_XREF=gi:3291608 /DB_XREF=UI-R-C1-ki-f-12-0-UI.s1 /CLONE=UI-R-C1-ki-f-12-0-UI /FEA=EST /CNT=5 /TID=Rn.16018.1 /TIER=ConsEnd /STK=0 /UG=Rn.16018 /UG_TITLE=ESTs AI044747 protein phosphatase 1, regulatory (inhibitor) subunit 14c Ppp1r14c 171010 NM_133425 0042325 // regulation of phosphorylation // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from electronic annotation /// 0004865 // protein serine/threonine phosphatase inhibitor activity // inferred from direct assay /// 0004865 // protein serine/threonine phosphatase inhibitor activity // not recorded /// 0004865 // protein serine/threonine phosphatase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1393083_at AI102529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102529 /DB_XREF=gi:3704678 /DB_XREF=EST211818 /CLONE=REMBO83 /FEA=EST /CNT=5 /TID=Rn.22407.2 /TIER=ConsEnd /STK=0 /UG=Rn.22407 /UG_TITLE=ESTs AI102529 Thymocyte selection-associated high mobility group box Tox 362481 NM_001108654 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1393084_at AA964188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964188 /DB_XREF=gi:4279064 /DB_XREF=UI-R-C0-gy-f-10-0-UI.s1 /CLONE=UI-R-C0-gy-f-10-0-UI /FEA=EST /CNT=5 /TID=Rn.11728.1 /TIER=ConsEnd /STK=0 /UG=Rn.11728 /UG_TITLE=ESTs AA964188 HRAS-like suppressor Hrasls 288025 NM_001105871 0005641 // nuclear envelope lumen // inferred from electronic annotation /// 0005641 // nuclear envelope lumen // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1393085_at BI290341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290341 /DB_XREF=gi:14948814 /DB_XREF=UI-R-DK0-cfv-a-11-0-UI.s1 /CLONE=UI-R-DK0-cfv-a-11-0-UI /FEA=EST /CNT=5 /TID=Rn.31403.1 /TIER=ConsEnd /STK=0 /UG=Rn.31403 /UG_TITLE=ESTs BI290341 MIT, microtubule interacting and transport, domain containing 1 Mitd1 363219 NM_001009714 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from electronic annotation 1393086_at AI060055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060055 /DB_XREF=gi:3333832 /DB_XREF=UI-R-C1-kz-f-07-0-UI.s1 /CLONE=UI-R-C1-kz-f-07-0-UI /FEA=EST /CNT=5 /TID=Rn.21174.1 /TIER=ConsEnd /STK=0 /UG=Rn.21174 /UG_TITLE=ESTs AI060055 ubiquitin-like modifier activating enzyme 6 Uba6 305268 NM_001107213 0006464 // protein modification process // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded 0005737 // cytoplasm // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008641 // small protein activating enzyme activity // inferred from electronic annotation /// 0019780 // FAT10 activating enzyme activity // not recorded 1393087_at BI277503 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277503 /DB_XREF=gi:14923440 /DB_XREF=UI-R-CY0-bxq-h-10-0-UI.s1 /CLONE=UI-R-CY0-bxq-h-10-0-UI /FEA=EST /CNT=5 /TID=Rn.14980.1 /TIER=ConsEnd /STK=0 /UG=Rn.14980 /UG_TITLE=ESTs BI277503 RecQ protein-like 5 Recql5 287834 NM_001105853 0006310 // DNA recombination // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1393088_at BF554013 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554013 /DB_XREF=gi:11663743 /DB_XREF=UI-R-C0-ih-e-03-0-UI.r1 /CLONE=UI-R-C0-ih-e-03-0-UI /FEA=EST /CNT=5 /TID=Rn.47359.1 /TIER=ConsEnd /STK=0 /UG=Rn.47359 /UG_TITLE=ESTs BF554013 RNA (guanine-9-) methyltransferase domain containing 1 Rg9mtd1 304012 NM_001008337 0008033 // tRNA processing // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1393089_at BI295973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295973 /DB_XREF=gi:14959953 /DB_XREF=UI-R-DK0-cfc-h-09-0-UI.s1 /CLONE=UI-R-DK0-cfc-h-09-0-UI /FEA=EST /CNT=5 /TID=Rn.45864.1 /TIER=ConsEnd /STK=0 /UG=Rn.45864 /UG_TITLE=ESTs, Weakly similar to T00344 hypothetical protein KIAA0586 (H.sapiens) BI295973 similar to Protein KIAA0586 LOC690035 690035 XR_086273 1393090_at BI296091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296091 /DB_XREF=gi:14960186 /DB_XREF=UI-R-DK0-cew-c-03-0-UI.s1 /CLONE=UI-R-DK0-cew-c-03-0-UI /FEA=EST /CNT=5 /TID=Rn.22897.1 /TIER=ConsEnd /STK=0 /UG=Rn.22897 /UG_TITLE=ESTs, Weakly similar to TRAM_HUMAN TRAM protein (Translocating chain-associating membrane protein) (H.sapiens) BI296091 translocating chain-associating membrane protein 2 LOC100361830 100361830 XM_002730008 /// XM_002730009 0016021 // integral to membrane // inferred from electronic annotation 1393091_at H34096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H34096 /DB_XREF=gi:979513 /DB_XREF=EST110673 /CLONE=RPNBK63 /FEA=EST /CNT=5 /TID=Rn.19926.1 /TIER=ConsEnd /STK=0 /UG=Rn.19926 /UG_TITLE=ESTs H34096 mesoderm induction early response 1, family member 3 Mier3 310086 NM_001168000 0003677 // DNA binding // inferred from electronic annotation 1393092_at AA964873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964873 /DB_XREF=gi:4279747 /DB_XREF=UI-R-C0-gr-c-01-0-UI.s1 /CLONE=UI-R-C0-gr-c-01-0-UI /FEA=EST /CNT=5 /TID=Rn.11932.1 /TIER=ConsEnd /STK=0 /UG=Rn.11932 /UG_TITLE=ESTs AA964873 zinc finger protein 53 Zfp53 308236 NM_001107468 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393093_at BF522164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522164 /DB_XREF=gi:11630131 /DB_XREF=UI-R-E0-bp-d-09-0-UI.r1 /CLONE=UI-R-E0-bp-d-09-0-UI /FEA=EST /CNT=5 /TID=Rn.28927.2 /TIER=ConsEnd /STK=0 /UG=Rn.28927 /UG_TITLE=ESTs BF522164 1393094_at AI385367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385367 /DB_XREF=gi:4198149 /DB_XREF=UI-R-C2-mu-f-09-0-UI.s2 /CLONE=UI-R-C2-mu-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.19867.1 /TIER=ConsEnd /STK=0 /UG=Rn.19867 /UG_TITLE=ESTs AI385367 1393095_at BI276113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276113 /DB_XREF=gi:14920712 /DB_XREF=UI-R-CX0-bwz-c-04-0-UI.s1 /CLONE=UI-R-CX0-bwz-c-04-0-UI /FEA=EST /CNT=5 /TID=Rn.52521.1 /TIER=ConsEnd /STK=0 /UG=Rn.52521 /UG_TITLE=ESTs BI276113 tankyrase 1 binding protein 1 Tnks1bp1 295707 XM_001069984 /// XM_215763 0005515 // protein binding // not recorded 1393096_at BF393086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393086 /DB_XREF=gi:11377946 /DB_XREF=UI-R-CA0-bgu-d-03-0-UI.s1 /CLONE=UI-R-CA0-bgu-d-03-0-UI /FEA=EST /CNT=5 /TID=Rn.33196.1 /TIER=ConsEnd /STK=0 /UG=Rn.33196 /UG_TITLE=ESTs BF393086 1393097_at AI709802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709802 /DB_XREF=gi:4999578 /DB_XREF=UI-R-C3-tj-h-01-0-UI.s1 /CLONE=UI-R-C3-tj-h-01-0-UI /FEA=EST /CNT=5 /TID=Rn.9003.1 /TIER=ConsEnd /STK=0 /UG=Rn.9003 /UG_TITLE=ESTs AI709802 Regulation of nuclear pre-mRNA domain containing 1A Rprd1a 291736 XM_001056597 /// XM_214609 1393098_at BM386610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386610 /DB_XREF=gi:18186663 /DB_XREF=UI-R-CN1-cjg-b-07-0-UI.s1 /CLONE=UI-R-CN1-cjg-b-07-0-UI /FEA=EST /CNT=5 /TID=Rn.32547.1 /TIER=ConsEnd /STK=0 /UG=Rn.32547 /UG_TITLE=ESTs, Moderately similar to S55474 Human giant larvae homolog (H.sapiens) BM386610 lethal giant larvae homolog 2 (Drosophila) Llgl2 360661 NM_001127549 0032878 // regulation of establishment or maintenance of cell polarity // not recorded 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded 1393099_at BF400576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400576 /DB_XREF=gi:11388551 /DB_XREF=UI-R-CA0-bhd-a-06-0-UI.s1 /CLONE=UI-R-CA0-bhd-a-06-0-UI /FEA=EST /CNT=5 /TID=Rn.39251.1 /TIER=ConsEnd /STK=0 /UG=Rn.39251 /UG_TITLE=ESTs, Highly similar to cytochrome c oxidase assembly protein COX11 (H.sapiens) BF400576 COX11 homolog, cytochrome c oxidase assembly protein (yeast) Cox11 690300 NM_001109575 0005739 // mitochondrion // not recorded 0005507 // copper ion binding // inferred from electronic annotation 1393100_at AI071493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071493 /DB_XREF=gi:3397708 /DB_XREF=UI-R-C2-nc-d-02-0-UI.s1 /CLONE=UI-R-C2-nc-d-02-0-UI /FEA=EST /CNT=5 /TID=Rn.20549.1 /TIER=ConsEnd /STK=0 /UG=Rn.20549 /UG_TITLE=ESTs, Moderately similar to Y391_HUMAN HYPOTHETICAL PROTEIN KIAA0391 (H.sapiens) AI071493 similar to 1110008L16Rik protein RGD1305089 299050 NM_001106730 0008033 // tRNA processing // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation 1393101_at BM385838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385838 /DB_XREF=gi:18185891 /DB_XREF=UI-R-DM1-cke-i-24-0-UI.s1 /CLONE=UI-R-DM1-cke-i-24-0-UI /FEA=EST /CNT=5 /TID=Rn.32641.1 /TIER=ConsEnd /STK=0 /UG=Rn.32641 /UG_TITLE=ESTs BM385838 lysine (K)-specific demethylase 2B Kdm2b 304495 NM_001100679 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1393102_at BI276707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276707 /DB_XREF=gi:14921863 /DB_XREF=UI-R-CX0-bxj-e-04-0-UI.s1 /CLONE=UI-R-CX0-bxj-e-04-0-UI /FEA=EST /CNT=5 /TID=Rn.36047.1 /TIER=ConsEnd /STK=0 /UG=Rn.36047 /UG_TITLE=ESTs BI276707 GTP binding protein 6 (putative) Gtpbp6 363931 NM_001135840 0005622 // intracellular // inferred from electronic annotation 0005525 // GTP binding // inferred from electronic annotation 1393103_at BM383631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383631 /DB_XREF=gi:18183684 /DB_XREF=UI-R-DM1-cka-h-08-0-UI.s1 /CLONE=UI-R-DM1-cka-h-08-0-UI /FEA=EST /CNT=5 /TID=Rn.66955.1 /TIER=ConsEnd /STK=0 /UG=Rn.66955 /UG_TITLE=ESTs BM383631 similar to cDNA sequence BC024814 RGD1311433 287054 XM_001078804 /// XM_213210 1393104_at BI292315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292315 /DB_XREF=gi:14952689 /DB_XREF=UI-R-DO0-ciw-d-10-0-UI.s1 /CLONE=UI-R-DO0-ciw-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.16239.1 /TIER=ConsEnd /STK=0 /UG=Rn.16239 /UG_TITLE=ESTs BI292315 DTW domain containing 2 Dtwd2 361326 NM_001108431 1393105_at BF288164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288164 /DB_XREF=gi:11219234 /DB_XREF=EST452755 /CLONE=RGIGQ31 /FEA=EST /CNT=2 /TID=Rn.31727.2 /TIER=ConsEnd /STK=1 /UG=Rn.31727 /UG_TITLE=ESTs, Highly similar to ZPR1 MOUSE ZINC-FINGER PROTEIN ZPR1 (M.musculus) BF288164 zinc finger protein 259 Zfp259 500989 NM_001137646 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded 1393106_x_at BF420770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420770 /DB_XREF=gi:11408759 /DB_XREF=UI-R-BJ2-bqa-a-07-0-UI.s1 /CLONE=UI-R-BJ2-bqa-a-07-0-UI /FEA=EST /CNT=5 /TID=Rn.37640.1 /TIER=ConsEnd /STK=0 /UG=Rn.37640 /UG_TITLE=ESTs, Highly similar to 1804353A transcription factor RAP74 (H.sapiens) BF420770 general transcription factor IIF, polypeptide 1 Gtf2f1 316123 NM_001007711 0006350 // transcription // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0008380 // RNA splicing // not recorded /// 0009615 // response to virus // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0019211 // phosphatase activator activity // not recorded 1393107_at BI303078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303078 /DB_XREF=gi:14979358 /DB_XREF=UI-R-DQ0-ciz-a-15-0-UI.s1 /CLONE=UI-R-DQ0-ciz-a-15-0-UI /FEA=EST /CNT=5 /TID=Rn.17512.1 /TIER=ConsEnd /STK=0 /UG=Rn.17512 /UG_TITLE=ESTs BI303078 1393108_at BM387813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387813 /DB_XREF=gi:18187866 /DB_XREF=UI-R-CN1-cjk-k-22-0-UI.s1 /CLONE=UI-R-CN1-cjk-k-22-0-UI /FEA=EST /CNT=5 /TID=Rn.25539.1 /TIER=ConsEnd /STK=0 /UG=Rn.25539 /UG_TITLE=ESTs, Weakly similar to A60716 somatotropin intron-related protein RDE.25 - rat (R.norvegicus) BM387813 1393109_at BI274436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274436 /DB_XREF=gi:14885348 /DB_XREF=UI-R-CW0-bwi-h-05-0-UI.s1 /CLONE=UI-R-CW0-bwi-h-05-0-UI /FEA=EST /CNT=5 /TID=Rn.2624.1 /TIER=ConsEnd /STK=0 /UG=Rn.2624 /UG_TITLE=ESTs BI274436 1393110_at BI281552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281552 /DB_XREF=gi:14931401 /DB_XREF=UI-R-DD0-bzv-e-12-0-UI.s1 /CLONE=UI-R-DD0-bzv-e-12-0-UI /FEA=EST /CNT=5 /TID=Rn.43971.1 /TIER=ConsEnd /STK=0 /UG=Rn.43971 /UG_TITLE=ESTs, Highly similar to MPV1 MOUSE MPV17 PROTEIN (M.musculus) BI281552 MPV17 mitochondrial membrane protein-like Mpv17l 360463 NM_001098240 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1393111_at AW524426 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524426 /DB_XREF=gi:7166811 /DB_XREF=UI-R-BO0-ahx-c-03-0-UI.s1 /CLONE=UI-R-BO0-ahx-c-03-0-UI /FEA=EST /CNT=5 /TID=Rn.24264.1 /TIER=ConsEnd /STK=0 /UG=Rn.24264 /UG_TITLE=ESTs AW524426 1393112_at BF410059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410059 /DB_XREF=gi:11398034 /DB_XREF=UI-R-CA1-bjt-a-10-0-UI.s1 /CLONE=UI-R-CA1-bjt-a-10-0-UI /FEA=EST /CNT=5 /TID=Rn.33200.1 /TIER=ConsEnd /STK=0 /UG=Rn.33200 /UG_TITLE=ESTs, Highly similar to TS13 MOUSE TESTIS-SPECIFIC PROTEIN PBS13 (M.musculus) BF410059 t-complex protein 11 Tcp11 309641 NM_001007695 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1393113_at AA957578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957578 /DB_XREF=gi:4277468 /DB_XREF=UI-R-E1-gf-h-08-0-UI.s1 /CLONE=UI-R-E1-gf-h-08-0-UI /FEA=EST /CNT=5 /TID=Rn.64898.1 /TIER=ConsEnd /STK=0 /UG=Rn.64898 /UG_TITLE=ESTs, Highly similar to A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.sapiens) AA957578 Rho GTPase activating protein 1 Arhgap1 311193 NM_001107747 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0043087 // regulation of GTPase activity // not recorded 0001726 // ruffle // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005886 // plasma membrane // not recorded /// 0031252 // cell leading edge // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005100 // Rho GTPase activator activity // not recorded /// 0005515 // protein binding // not recorded /// 0030675 // Rac GTPase activator activity // not recorded 1393114_at AI136684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136684 /DB_XREF=gi:3637461 /DB_XREF=UI-R-C2p-nq-e-07-0-UI.s1 /CLONE=UI-R-C2p-nq-e-07-0-UI /FEA=EST /CNT=5 /TID=Rn.16516.1 /TIER=ConsEnd /STK=0 /UG=Rn.16516 /UG_TITLE=ESTs AI136684 1393115_at BI293687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293687 /DB_XREF=gi:14955421 /DB_XREF=UI-R-DK0-cdu-e-06-0-UI.s1 /CLONE=UI-R-DK0-cdu-e-06-0-UI /FEA=EST /CNT=5 /TID=Rn.18609.1 /TIER=ConsEnd /STK=0 /UG=Rn.18609 /UG_TITLE=ESTs BI293687 ubiquitin specific peptidase 46 Usp46 289584 NM_001191596 /// XM_001068586 /// XM_214034 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007610 // behavior // not recorded /// 0016579 // protein deubiquitination // not recorded /// 0032228 // regulation of synaptic transmission, GABAergic // not recorded 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0005515 // protein binding // not recorded 1393116_at BI286804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286804 /DB_XREF=gi:14941801 /DB_XREF=UI-R-CT0s-cam-a-11-0-UI.s1 /CLONE=UI-R-CT0s-cam-a-11-0-UI /FEA=EST /CNT=5 /TID=Rn.11735.1 /TIER=ConsEnd /STK=0 /UG=Rn.11735 /UG_TITLE=ESTs BI286804 SET and MYND domain containing 4 Smyd4 287525 NM_001105810 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1393117_at BI286900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286900 /DB_XREF=gi:14941992 /DB_XREF=UI-R-CT0s-caw-c-11-0-UI.s1 /CLONE=UI-R-CT0s-caw-c-11-0-UI /FEA=EST /CNT=5 /TID=Rn.1701.1 /TIER=ConsEnd /STK=0 /UG=Rn.1701 /UG_TITLE=ESTs BI286900 1393118_at BI295562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295562 /DB_XREF=gi:14959134 /DB_XREF=UI-R-DK0-cev-h-01-0-UI.s1 /CLONE=UI-R-DK0-cev-h-01-0-UI /FEA=EST /CNT=5 /TID=Rn.41739.1 /TIER=ConsEnd /STK=0 /UG=Rn.41739 /UG_TITLE=ESTs BI295562 armadillo repeat containing 1 Armc1 294948 NM_001106425 0030001 // metal ion transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005488 // binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393119_at BM388725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388725 /DB_XREF=gi:18188778 /DB_XREF=UI-R-DZ0-ckm-l-14-0-UI.s1 /CLONE=UI-R-DZ0-ckm-l-14-0-UI /FEA=EST /CNT=5 /TID=Rn.12711.1 /TIER=ConsEnd /STK=0 /UG=Rn.12711 /UG_TITLE=ESTs BM388725 1393120_at BG381381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381381 /DB_XREF=gi:13305853 /DB_XREF=UI-R-CS0-btt-e-11-0-UI.s1 /CLONE=UI-R-CS0-btt-e-11-0-UI /FEA=EST /CNT=5 /TID=Rn.41166.1 /TIER=ConsEnd /STK=0 /UG=Rn.41166 /UG_TITLE=ESTs BG381381 1393121_at BI292233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292233 /DB_XREF=gi:14952528 /DB_XREF=UI-R-DN0-civ-a-12-0-UI.s1 /CLONE=UI-R-DN0-civ-a-12-0-UI /FEA=EST /CNT=5 /TID=Rn.42113.1 /TIER=ConsEnd /STK=0 /UG=Rn.42113 /UG_TITLE=ESTs, Highly similar to anterior gradient 2 homolog (Xenepus laevis); anterior gradient 2 (Xenopus laevis, secreted cement gland) homolog; anterior gradient 2 (Xenepus laevis) homolog (Homo sapiens) (H.sapiens) BI292233 anterior gradient homolog 2 (Xenopus laevis) Agr2 298961 NM_001106725 0070254 // mucus secretion // not recorded 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // not recorded 0005515 // protein binding // not recorded 1393122_at BG380561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380561 /DB_XREF=gi:13305033 /DB_XREF=UI-R-CT0-bty-g-05-0-UI.s1 /CLONE=UI-R-CT0-bty-g-05-0-UI /FEA=EST /CNT=5 /TID=Rn.6766.1 /TIER=ConsEnd /STK=0 /UG=Rn.6766 /UG_TITLE=ESTs, Weakly similar to MAGEF1 protein (Homo sapiens) (H.sapiens) BG380561 rCG36634-like LOC100364467 100364467 XM_002724742 1393123_at BM392153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392153 /DB_XREF=gi:18192206 /DB_XREF=UI-R-DO1-ckp-e-14-0-UI.s1 /CLONE=UI-R-DO1-ckp-e-14-0-UI /FEA=EST /CNT=5 /TID=Rn.17399.1 /TIER=ConsEnd /STK=0 /UG=Rn.17399 /UG_TITLE=ESTs, Moderately similar to C8HUG complement C8 gamma chain precursor (H.sapiens) BM392153 complement component 8, gamma polypeptide C8g 296545 NM_001106555 0006810 // transport // inferred from electronic annotation 0005576 // extracellular region // not recorded 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1393124_at AI145807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145807 /DB_XREF=gi:3667606 /DB_XREF=UI-R-BT0-qi-e-10-0-UI.s1 /CLONE=UI-R-BT0-qi-e-10-0-UI /FEA=EST /CNT=5 /TID=Rn.28623.1 /TIER=ConsEnd /STK=0 /UG=Rn.28623 /UG_TITLE=ESTs AI145807 potassium voltage gated channel, shaker related subfamily, member 6 Kcna6 64358 NM_023954 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1393125_a_at AA955445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955445 /DB_XREF=gi:4237800 /DB_XREF=UI-R-A1-ew-e-10-0-UI.s1 /CLONE=UI-R-A1-ew-e-10-0-UI /FEA=EST /CNT=5 /TID=Rn.8664.1 /TIER=ConsEnd /STK=0 /UG=Rn.8664 /UG_TITLE=ESTs, Weakly similar to KIAA0365 (H.sapiens) AA955445 splicing factor, arginine/serine-rich 14 Sfrs14 361126 NM_001108397 0006396 // RNA processing // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1393126_at BI293253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293253 /DB_XREF=gi:14954580 /DB_XREF=UI-R-DK0-cdm-f-06-0-UI.s1 /CLONE=UI-R-DK0-cdm-f-06-0-UI /FEA=EST /CNT=5 /TID=Rn.41952.1 /TIER=ConsEnd /STK=0 /UG=Rn.41952 /UG_TITLE=ESTs BI293253 ubiquitin domain containing 1 Ubtd1 309373 NM_001013153 1393127_at AI707002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI707002 /DB_XREF=gi:4994902 /DB_XREF=UI-R-AD1-zm-b-07-0-UI.s1 /CLONE=UI-R-AD1-zm-b-07-0-UI /FEA=EST /CNT=5 /TID=Rn.22648.1 /TIER=ConsEnd /STK=0 /UG=Rn.22648 /UG_TITLE=ESTs AI707002 zinc finger protein 358 Zfp358 360754 NM_001108328 0019827 // stem cell maintenance // not recorded /// 0021915 // neural tube development // not recorded /// 0035115 // embryonic forelimb morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1393128_at BI288424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288424 /DB_XREF=gi:14944998 /DB_XREF=UI-R-DK0-cda-g-03-0-UI.s1 /CLONE=UI-R-DK0-cda-g-03-0-UI /FEA=EST /CNT=5 /TID=Rn.20166.1 /TIER=ConsEnd /STK=0 /UG=Rn.20166 /UG_TITLE=ESTs BI288424 G patch domain containing 4 Gpatch4 295228 NM_001024979 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation 1393129_at AI711403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711403 /DB_XREF=gi:5001179 /DB_XREF=UI-R-AF0-yb-e-10-0-UI.s1 /CLONE=UI-R-AF0-yb-e-10-0-UI /FEA=EST /CNT=5 /TID=Rn.37765.1 /TIER=ConsEnd /STK=0 /UG=Rn.37765 /UG_TITLE=ESTs, Moderately similar to P4HA RAT PROLYL 4-HYDROXYLASE ALPHA SUBUNIT PRECURSOR (R.norvegicus) AI711403 Procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III P4ha3 361612 NM_198775 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0016222 // procollagen-proline 4-dioxygenase complex // traceable author statement 0004656 // procollagen-proline 4-dioxygenase activity // inferred from mutant phenotype /// 0004656 // procollagen-proline 4-dioxygenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393130_at BI288617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288617 /DB_XREF=gi:14945380 /DB_XREF=UI-R-DK0-cdd-a-02-0-UI.s1 /CLONE=UI-R-DK0-cdd-a-02-0-UI /FEA=EST /CNT=5 /TID=Rn.3791.1 /TIER=ConsEnd /STK=0 /UG=Rn.3791 /UG_TITLE=ESTs BI288617 1393131_at AI112338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112338 /DB_XREF=gi:3512287 /DB_XREF=UI-R-Y0-mg-g-02-0-UI.s1 /CLONE=UI-R-Y0-mg-g-02-0-UI /FEA=EST /CNT=5 /TID=Rn.18880.1 /TIER=ConsEnd /STK=0 /UG=Rn.18880 /UG_TITLE=ESTs AI112338 FLT3-interacting zinc finger 1 Fiz1 292584 NM_001106223 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded 1393132_at BI293325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293325 /DB_XREF=gi:14954720 /DB_XREF=UI-R-DK0-cdn-f-10-0-UI.s1 /CLONE=UI-R-DK0-cdn-f-10-0-UI /FEA=EST /CNT=5 /TID=Rn.34670.1 /TIER=ConsEnd /STK=0 /UG=Rn.34670 /UG_TITLE=ESTs BI293325 similar to inhibitor of MyoD family-a RGD1560271 501097 NM_001109301 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007257 // activation of JUN kinase activity // inferred from electronic annotation /// 0009950 // dorsal/ventral axis specification // inferred from electronic annotation /// 0030111 // regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0043392 // negative regulation of DNA binding // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0060707 // trophoblast giant cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation 1393133_at BG381252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381252 /DB_XREF=gi:13305724 /DB_XREF=UI-R-CT0-bui-a-05-0-UI.s1 /CLONE=UI-R-CT0-bui-a-05-0-UI /FEA=EST /CNT=5 /TID=Rn.27122.1 /TIER=ConsEnd /STK=0 /UG=Rn.27122 /UG_TITLE=ESTs BG381252 1393134_at BG375377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375377 /DB_XREF=gi:13299849 /DB_XREF=UI-R-CV1-bsz-f-09-0-UI.s1 /CLONE=UI-R-CV1-bsz-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.66307.1 /TIER=ConsEnd /STK=0 /UG=Rn.66307 /UG_TITLE=ESTs BG375377 selenophosphate synthetase 1 Sephs1 291314 NM_001104630 0003824 // catalytic activity // inferred from electronic annotation /// 0004756 // selenide, water dikinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1393135_at BM390238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390238 /DB_XREF=gi:18190291 /DB_XREF=UI-R-CN1-cjq-i-21-0-UI.s1 /CLONE=UI-R-CN1-cjq-i-21-0-UI /FEA=EST /CNT=5 /TID=Rn.7027.1 /TIER=ConsEnd /STK=0 /UG=Rn.7027 /UG_TITLE=ESTs BM390238 1393136_at BF393285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393285 /DB_XREF=gi:11378140 /DB_XREF=UI-R-CA0-bft-a-03-0-UI.s1 /CLONE=UI-R-CA0-bft-a-03-0-UI /FEA=EST /CNT=5 /TID=Rn.29357.2 /TIER=ConsEnd /STK=0 /UG=Rn.29357 /UG_TITLE=ESTs, Weakly similar to T25667 hypothetical protein D2092.5 - Caenorhabditis elegans (C.elegans) BF393285 transmembrane protein 57 Tmem57 313618 NM_001025699 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1393137_at BF419468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419468 /DB_XREF=gi:11407457 /DB_XREF=UI-R-CA0-bns-b-04-0-UI.s1 /CLONE=UI-R-CA0-bns-b-04-0-UI /FEA=EST /CNT=5 /TID=Rn.63532.1 /TIER=ConsEnd /STK=0 /UG=Rn.63532 /UG_TITLE=ESTs BF419468 Tctex1 domain containing 1 Tctex1d1 362553 NM_001135030 1393138_at BE329377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329377 /DB_XREF=gi:9203153 /DB_XREF=hq34g01.x1 /CLONE=IMAGE:3121296 /FEA=EST /CNT=5 /TID=Rn.19046.1 /TIER=ConsEnd /STK=0 /UG=Rn.19046 /UG_TITLE=ESTs BE329377 jun D proto-oncogene Jund 24518 NM_138875 0002076 // osteoblast development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0007568 // aging // inferred from expression pattern /// 0007623 // circadian rhythm // inferred from expression pattern /// 0009416 // response to light stimulus // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016922 // ligand-dependent nuclear receptor binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred by curator /// 0046983 // protein dimerization activity // inferred from electronic annotation 1393139_at BM385272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385272 /DB_XREF=gi:18185325 /DB_XREF=UI-R-EB1-clf-j-08-0-UI.s1 /CLONE=UI-R-EB1-clf-j-08-0-UI /FEA=EST /CNT=5 /TID=Rn.16843.1 /TIER=ConsEnd /STK=0 /UG=Rn.16843 /UG_TITLE=ESTs, Moderately similar to APC2 MOUSE APOLIPOPROTEIN C-II PRECURSOR (M.musculus) BM385272 apolipoprotein C-II Apoc2 292697 NM_001085352 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0010518 // positive regulation of phospholipase activity // inferred from electronic annotation /// 0010518 // positive regulation of phospholipase activity // not recorded /// 0010898 // positive regulation of triglyceride catabolic process // inferred from electronic annotation /// 0010898 // positive regulation of triglyceride catabolic process // not recorded /// 0010916 // negative regulation of very-low-density lipoprotein particle clearance // inferred from electronic annotation /// 0010916 // negative regulation of very-low-density lipoprotein particle clearance // not recorded /// 0032375 // negative regulation of cholesterol transport // inferred from electronic annotation /// 0032375 // negative regulation of cholesterol transport // not recorded /// 0033344 // cholesterol efflux // inferred from electronic annotation /// 0033344 // cholesterol efflux // not recorded /// 0033700 // phospholipid efflux // inferred from electronic annotation /// 0033700 // phospholipid efflux // not recorded /// 0034382 // chylomicron remnant clearance // inferred from electronic annotation /// 0034382 // chylomicron remnant clearance // not recorded /// 0034384 // high-density lipoprotein particle clearance // inferred from electronic annotation /// 0034384 // high-density lipoprotein particle clearance // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042953 // lipoprotein transport // inferred from direct assay /// 0045723 // positive regulation of fatty acid biosynthetic process // inferred from electronic annotation /// 0045723 // positive regulation of fatty acid biosynthetic process // not recorded /// 0045833 // negative regulation of lipid metabolic process // inferred from electronic annotation /// 0045833 // negative regulation of lipid metabolic process // not recorded /// 0048261 // negative regulation of receptor-mediated endocytosis // inferred from electronic annotation /// 0048261 // negative regulation of receptor-mediated endocytosis // not recorded /// 0051006 // positive regulation of lipoprotein lipase activity // inferred from electronic annotation /// 0051006 // positive regulation of lipoprotein lipase activity // not recorded /// 0060697 // positive regulation of phospholipid catabolic process // inferred from electronic annotation /// 0060697 // positive regulation of phospholipid catabolic process // not recorded /// 0070328 // triglyceride homeostasis // inferred from electronic annotation /// 0070328 // triglyceride homeostasis // not recorded 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0034361 // very-low-density lipoprotein particle // inferred from electronic annotation /// 0034361 // very-low-density lipoprotein particle // not recorded /// 0034362 // low-density lipoprotein particle // inferred from electronic annotation /// 0034362 // low-density lipoprotein particle // not recorded /// 0034363 // intermediate-density lipoprotein particle // inferred from electronic annotation /// 0034363 // intermediate-density lipoprotein particle // not recorded /// 0034366 // spherical high-density lipoprotein particle // inferred from electronic annotation /// 0034366 // spherical high-density lipoprotein particle // not recorded /// 0042627 // chylomicron // inferred from electronic annotation /// 0042627 // chylomicron // not recorded 0008047 // enzyme activator activity // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0008289 // lipid binding // not recorded /// 0016004 // phospholipase activator activity // inferred from electronic annotation /// 0016004 // phospholipase activator activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043274 // phospholipase binding // inferred from electronic annotation /// 0043274 // phospholipase binding // not recorded /// 0055102 // lipase inhibitor activity // inferred from electronic annotation /// 0055102 // lipase inhibitor activity // not recorded /// 0060230 // lipoprotein lipase activator activity // inferred from electronic annotation /// 0060230 // lipoprotein lipase activator activity // not recorded 1393140_at AI574699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI574699 /DB_XREF=gi:4544695 /DB_XREF=UI-R-G0-uc-d-05-0-UI.s1 /CLONE=UI-R-G0-uc-d-05-0-UI /FEA=EST /CNT=5 /TID=Rn.64897.1 /TIER=ConsEnd /STK=0 /UG=Rn.64897 /UG_TITLE=ESTs AI574699 zinc finger CCCH type containing 12A Zc3h12a 313587 NM_001077671 0001525 // angiogenesis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393141_at BF285419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285419 /DB_XREF=gi:11216579 /DB_XREF=EST450100 /CLONE=RGIFH04 /FEA=EST /CNT=9 /TID=Rn.43156.1 /TIER=ConsEnd /STK=0 /UG=Rn.43156 /UG_TITLE=ESTs BF285419 1393142_at BF562621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562621 /DB_XREF=gi:11672351 /DB_XREF=UI-R-BS0-anw-d-01-0-UI.r1 /CLONE=UI-R-BS0-anw-d-01-0-UI /FEA=EST /CNT=8 /TID=Rn.6338.1 /TIER=ConsEnd /STK=0 /UG=Rn.6338 /UG_TITLE=ESTs BF562621 centrosomal protein 70kDa Cep70 367153 NM_001017470 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393143_at AI045866 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045866 /DB_XREF=gi:3292685 /DB_XREF=UI-R-C1-km-g-07-0-UI.s1 /CLONE=UI-R-C1-km-g-07-0-UI /FEA=EST /CNT=7 /TID=Rn.16334.1 /TIER=ConsEnd /STK=0 /UG=Rn.16334 /UG_TITLE=ESTs AI045866 1393144_at BM388202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388202 /DB_XREF=gi:18188255 /DB_XREF=UI-R-DM1-cjz-m-19-0-UI.s1 /CLONE=UI-R-DM1-cjz-m-19-0-UI /FEA=EST /CNT=7 /TID=Rn.18496.2 /TIER=ConsEnd /STK=0 /UG=Rn.18496 /UG_TITLE=ESTs, Moderately similar to NMI_MOUSE N-MYC-INTERACTOR (NMI) (N-MYC AND STAT INTERACTOR) (M.musculus) BM388202 N-myc (and STAT) interactor Nmi 311021 NM_001034148 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393145_at AA899892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899892 /DB_XREF=gi:4232384 /DB_XREF=UI-R-E0-ck-d-11-0-UI.s2 /CLONE=UI-R-E0-ck-d-11-0-UI /FEA=EST /CNT=6 /TID=Rn.22924.1 /TIER=ConsEnd /STK=0 /UG=Rn.22924 /UG_TITLE=ESTs AA899892 3-ketodihydrosphingosine reductase Kdsr 360833 NM_001108342 0006666 // 3-keto-sphinganine metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0030148 // sphingolipid biosynthetic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0047560 // 3-dehydrosphinganine reductase activity // not recorded 1393146_at BG663116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663116 /DB_XREF=gi:13885038 /DB_XREF=DRA08E01 /CLONE=DRA08E01 /FEA=EST /CNT=6 /TID=Rn.16067.1 /TIER=ConsEnd /STK=0 /UG=Rn.16067 /UG_TITLE=ESTs BG663116 1393147_at AW533569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533569 /DB_XREF=gi:7175983 /DB_XREF=UI-R-BU0-and-d-11-0-UI.s1 /CLONE=UI-R-BU0-and-d-11-0-UI /FEA=EST /CNT=6 /TID=Rn.48629.1 /TIER=ConsEnd /STK=0 /UG=Rn.48629 /UG_TITLE=ESTs AW533569 chloride channel calcium activated 5 Clca5 308016 NM_001107450 0006821 // chloride transport // not recorded /// 0034220 // ion transmembrane transport // not recorded 0005886 // plasma membrane // not recorded 0005254 // chloride channel activity // not recorded /// 0015276 // ligand-gated ion channel activity // not recorded 1393148_at BF542593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542593 /DB_XREF=gi:11633700 /DB_XREF=UI-R-C2p-np-f-04-0-UI.r1 /CLONE=UI-R-C2p-np-f-04-0-UI /FEA=EST /CNT=5 /TID=Rn.48643.1 /TIER=ConsEnd /STK=0 /UG=Rn.48643 /UG_TITLE=ESTs BF542593 G protein-coupled receptor 137B Gpr137b 289287 NM_001105978 1393149_at BG663483 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663483 /DB_XREF=gi:13885405 /DB_XREF=DRAAAJF05 /CLONE=DRAAAJF05 /FEA=EST /CNT=5 /TID=Rn.22964.1 /TIER=ConsEnd /STK=0 /UG=Rn.22964 /UG_TITLE=ESTs BG663483 protocadherin alpha 1 /// protocadherin alpha 10 /// protocadherin alpha 11 /// protocadherin alpha 12 /// protocadherin alpha 13 /// protocadherin alpha 2 /// protocadherin alpha 3 /// protocadherin alpha 4 /// protocadherin alpha 5 /// protocadherin alpha 6 /// protocadherin alpha 7 /// protocadherin alpha 8 /// protocadherin alpha 9 /// protocadherin alpha subfamily C, 1 /// protocadherin alpha subfamily C, 2 Pcdha1 /// Pcdha10 /// Pcdha11 /// Pcdha12 /// Pcdha13 /// Pcdha2 /// Pcdha3 /// Pcdha4 /// Pcdha5 /// Pcdha6 /// Pcdha7 /// Pcdha8 /// Pcdha9 /// Pcdhac1 /// Pcdhac2 116741 /// 116742 /// 116778 /// 116779 /// 116780 /// 116781 /// 393085 /// 393086 /// 393087 /// 393088 /// 393089 /// 393090 /// 393091 /// 393092 /// 394223 NM_053933 /// NM_053934 /// NM_053939 /// NM_053940 /// NM_053941 /// NM_053942 /// NM_199486 /// NM_199503 /// NM_199504 /// NM_199505 /// NM_199506 /// NM_199507 /// NM_199508 /// NM_199509 /// NM_201422 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007283 // spermatogenesis // non-traceable author statement /// 0042476 // odontogenesis // non-traceable author statement 0005615 // extracellular space // traceable author statement /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393150_at BF562149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562149 /DB_XREF=gi:11671879 /DB_XREF=UI-R-E1-ft-a-08-0-UI.r1 /CLONE=UI-R-E1-ft-a-08-0-UI /FEA=EST /CNT=5 /TID=Rn.19137.1 /TIER=ConsEnd /STK=0 /UG=Rn.19137 /UG_TITLE=ESTs, Highly similar to JC6100 CACCC-box binding protein BKLF - mouse (M.musculus) BF562149 Kruppel-like factor 3 (basic) Klf3 114845 NM_001105742 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1393151_at BG668816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668816 /DB_XREF=gi:13890738 /DB_XREF=DRNBRH10 /CLONE=DRNBRH10 /FEA=EST /CNT=5 /TID=Rn.23062.1 /TIER=ConsEnd /STK=0 /UG=Rn.23062 /UG_TITLE=ESTs BG668816 ethanolamine kinase 1 Etnk1 312828 NM_001107894 0006646 // phosphatidylethanolamine biosynthetic process // not recorded 0004305 // ethanolamine kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1393152_at AI007821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI007821 /DB_XREF=gi:3221653 /DB_XREF=EST202272 /CLONE=RBRAV36 /FEA=EST /CNT=5 /TID=Rn.54738.2 /TIER=ConsEnd /STK=0 /UG=Rn.54738 /UG_TITLE=ESTs AI007821 methylmalonyl-Coenzyme A mutase Mut 688517 XM_001067239 0008152 // metabolic process // not recorded /// 0009791 // post-embryonic development // not recorded 0005739 // mitochondrion // not recorded 0004494 // methylmalonyl-CoA mutase activity // inferred from electronic annotation /// 0004494 // methylmalonyl-CoA mutase activity // not recorded /// 0031419 // cobalamin binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393153_at BG663023 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663023 /DB_XREF=gi:13884945 /DB_XREF=DRA07C04 /CLONE=DRA07C04 /FEA=EST /CNT=5 /TID=Rn.64095.1 /TIER=ConsEnd /STK=0 /UG=Rn.64095 /UG_TITLE=ESTs BG663023 1393154_at BM384240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384240 /DB_XREF=gi:18184293 /DB_XREF=UI-R-DZ0-cks-e-07-0-UI.s1 /CLONE=UI-R-DZ0-cks-e-07-0-UI /FEA=EST /CNT=5 /TID=Rn.20196.1 /TIER=ConsEnd /STK=0 /UG=Rn.20196 /UG_TITLE=ESTs BM384240 1393155_at AA957449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957449 /DB_XREF=gi:4277339 /DB_XREF=UI-R-E1-fy-h-08-0-UI.s1 /CLONE=UI-R-E1-fy-h-08-0-UI /FEA=EST /CNT=5 /TID=Rn.9284.1 /TIER=ConsEnd /STK=0 /UG=Rn.9284 /UG_TITLE=ESTs, Weakly similar to SNK_RAT SERINETHREONINE-PROTEIN KINASE SNK (SERUM INDUCIBLE KINASE) (R.norvegicus) AA957449 polo-like kinase 3 (Drosophila) Plk3 58936 NM_022187 0006468 // protein phosphorylation // traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // non-traceable author statement 0030425 // dendrite // inferred from direct assay /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // traceable author statement /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042801 // polo kinase kinase activity // inferred from electronic annotation 1393156_at BI278333 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278333 /DB_XREF=gi:14925071 /DB_XREF=UI-R-CW0-bwd-c-08-0-UI.s1 /CLONE=UI-R-CW0-bwd-c-08-0-UI /FEA=EST /CNT=5 /TID=Rn.45144.1 /TIER=ConsEnd /STK=0 /UG=Rn.45144 /UG_TITLE=ESTs, Weakly similar to A59271 Ra-reactive factor (H.sapiens) BI278333 1393157_at BF389860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389860 /DB_XREF=gi:11374697 /DB_XREF=UI-R-BS2-bdp-e-09-0-UI.s1 /CLONE=UI-R-BS2-bdp-e-09-0-UI /FEA=EST /CNT=5 /TID=Rn.24885.1 /TIER=ConsEnd /STK=0 /UG=Rn.24885 /UG_TITLE=ESTs BF389860 1393158_at BI298434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298434 /DB_XREF=gi:14974714 /DB_XREF=UI-R-CV2-chi-c-06-0-UI.s1 /CLONE=UI-R-CV2-chi-c-06-0-UI /FEA=EST /CNT=5 /TID=Rn.24572.1 /TIER=ConsEnd /STK=0 /UG=Rn.24572 /UG_TITLE=ESTs BI298434 centromere protein Q Cenpq 363198 NM_001014215 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 1393159_at BG671304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671304 /DB_XREF=gi:13893403 /DB_XREF=DRNBOE03 /CLONE=DRNBOE03 /FEA=EST /CNT=5 /TID=Rn.39317.1 /TIER=ConsEnd /STK=0 /UG=Rn.39317 /UG_TITLE=ESTs BG671304 1393160_at AA955879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955879 /DB_XREF=gi:4238274 /DB_XREF=UI-R-E1-ff-h-02-0-UI.s1 /CLONE=UI-R-E1-ff-h-02-0-UI /FEA=EST /CNT=5 /TID=Rn.11500.1 /TIER=ConsEnd /STK=0 /UG=Rn.11500 /UG_TITLE=ESTs AA955879 1393161_at AW916962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916962 /DB_XREF=gi:8082701 /DB_XREF=EST348266 /CLONE=RGIDX24 /FEA=EST /CNT=5 /TID=Rn.39378.2 /TIER=ConsEnd /STK=0 /UG=Rn.39378 /UG_TITLE=ESTs, Highly similar to snRNA activating protein complex 50kD subunit (H.sapiens) AW916962 small nuclear RNA activating complex, polypeptide 3 Snapc3 362537 NM_001013212 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393162_at AI502079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502079 /DB_XREF=gi:4399930 /DB_XREF=UI-R-C1-kc-e-06-0-UI.s1 /CLONE=UI-R-C1-kc-e-06-0-UI /FEA=EST /CNT=5 /TID=Rn.35607.1 /TIER=ConsEnd /STK=0 /UG=Rn.35607 /UG_TITLE=ESTs AI502079 solute carrier family 39 (zinc transporter), member 6 Slc39a6 291733 NM_001024745 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006829 // zinc ion transport // inferred from electronic annotation /// 0030001 // metal ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0046873 // metal ion transmembrane transporter activity // inferred from electronic annotation 1393163_at AI112184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112184 /DB_XREF=gi:3512133 /DB_XREF=UI-R-Y0-ml-f-07-0-UI.s1 /CLONE=UI-R-Y0-ml-f-07-0-UI /FEA=EST /CNT=5 /TID=Rn.26731.1 /TIER=ConsEnd /STK=0 /UG=Rn.26731 /UG_TITLE=ESTs AI112184 1393164_at AI137642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137642 /DB_XREF=gi:3638419 /DB_XREF=UI-R-C0-hc-e-08-0-UI.s1 /CLONE=UI-R-C0-hc-e-08-0-UI /FEA=EST /CNT=5 /TID=Rn.24870.1 /TIER=ConsEnd /STK=0 /UG=Rn.24870 /UG_TITLE=ESTs AI137642 mitochondrial ribosomal protein S27 Mrps27 361883 NM_001108543 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 1393165_at BG377684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377684 /DB_XREF=gi:13302156 /DB_XREF=UI-R-CU0-bve-g-06-0-UI.s1 /CLONE=UI-R-CU0-bve-g-06-0-UI /FEA=EST /CNT=5 /TID=Rn.18267.1 /TIER=ConsEnd /STK=0 /UG=Rn.18267 /UG_TITLE=ESTs BG377684 transmembrane protein 206 Tmem206 305070 NM_001007679 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1393166_at AA998749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998749 /DB_XREF=gi:4292008 /DB_XREF=UI-R-C0-ii-f-11-0-UI.s1 /CLONE=UI-R-C0-ii-f-11-0-UI /FEA=EST /CNT=5 /TID=Rn.7529.1 /TIER=ConsEnd /STK=0 /UG=Rn.7529 /UG_TITLE=ESTs, Highly similar to 2024339A cleavage stimulation factor (H.sapiens) AA998749 cleavage stimulation factor, 3 pre-RNA, subunit 3 (predicted)-like LOC100359435 100359435 XR_086201 1393167_at AI231826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231826 /DB_XREF=gi:3815706 /DB_XREF=EST228514 /CLONE=RHECO74 /FEA=EST /CNT=5 /TID=Rn.16091.1 /TIER=ConsEnd /STK=0 /UG=Rn.16091 /UG_TITLE=ESTs AI231826 1393168_at BF398450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398450 /DB_XREF=gi:11383440 /DB_XREF=UI-R-BS2-bep-a-03-0-UI.s1 /CLONE=UI-R-BS2-bep-a-03-0-UI /FEA=EST /CNT=5 /TID=Rn.17921.1 /TIER=ConsEnd /STK=0 /UG=Rn.17921 /UG_TITLE=ESTs BF398450 1393169_at AI578145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578145 /DB_XREF=gi:4562521 /DB_XREF=UI-R-Y0-uw-c-06-0-UI.s2 /CLONE=UI-R-Y0-uw-c-06-0-UI /FEA=EST /CNT=5 /TID=Rn.17636.1 /TIER=ConsEnd /STK=0 /UG=Rn.17636 /UG_TITLE=ESTs AI578145 1393170_at BF555514 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555514 /DB_XREF=gi:11665244 /DB_XREF=UI-R-A1-dp-b-10-0-UI.r1 /CLONE=UI-R-A1-dp-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.15213.1 /TIER=ConsEnd /STK=0 /UG=Rn.15213 /UG_TITLE=ESTs BF555514 similar to homeobox-containing transcription factor RGD1561431 500125 XM_001058923 /// XM_002729311 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1393171_at BG664080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664080 /DB_XREF=gi:13886002 /DB_XREF=DRAACG07 /CLONE=DRAACG07 /FEA=EST /CNT=4 /TID=Rn.43134.1 /TIER=ConsEnd /STK=0 /UG=Rn.43134 /UG_TITLE=ESTs BG664080 transmembrane protein 47 Tmem47 501569 NM_001109317 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1393172_at AA848648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848648 /DB_XREF=gi:4131660 /DB_XREF=EST191408 /CLONE=RLUAC59 /FEA=EST /CNT=4 /TID=Rn.25247.1 /TIER=ConsEnd /STK=0 /UG=Rn.25247 /UG_TITLE=ESTs AA848648 Ngfi-A binding protein 1 Nab1 64824 NM_022856 0001958 // endochondral ossification // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0014037 // Schwann cell differentiation // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0042552 // myelination // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045682 // regulation of epidermis development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0016564 // transcription repressor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded 1393173_at BG668164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668164 /DB_XREF=gi:13890086 /DB_XREF=DRABYC02 /CLONE=DRABYC02 /FEA=EST /CNT=4 /TID=Rn.42853.1 /TIER=ConsEnd /STK=0 /UG=Rn.42853 /UG_TITLE=ESTs BG668164 1393174_at AI412813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412813 /DB_XREF=gi:4256317 /DB_XREF=EST241113 /CLONE=RBRDQ16 /FEA=EST /CNT=4 /TID=Rn.44202.1 /TIER=ConsEnd /STK=0 /UG=Rn.44202 /UG_TITLE=ESTs AI412813 family with sequence similarity 171, member B Fam171b 499821 XM_001068767 /// XM_575160 1393175_at BF523675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523675 /DB_XREF=gi:11631642 /DB_XREF=UI-R-Y0-abu-c-10-0-UI.r1 /CLONE=UI-R-Y0-abu-c-10-0-UI /FEA=EST /CNT=4 /TID=Rn.21524.1 /TIER=ConsEnd /STK=0 /UG=Rn.21524 /UG_TITLE=ESTs, Weakly similar to RENAL TRANSCRIPTION FACTOR KID-1 (R.norvegicus) BF523675 Similar to RIKEN cDNA 2810426N06 RGD1562094 499137 XR_085713 /// XR_086122 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1393176_at BF387254 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387254 /DB_XREF=gi:11372078 /DB_XREF=UI-R-CA1-bbl-d-03-0-UI.s1 /CLONE=UI-R-CA1-bbl-d-03-0-UI /FEA=EST /CNT=4 /TID=Rn.24774.1 /TIER=ConsEnd /STK=0 /UG=Rn.24774 /UG_TITLE=ESTs BF387254 1393177_at AA924403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924403 /DB_XREF=gi:4234542 /DB_XREF=UI-R-A1-ds-d-03-0-UI.s1 /CLONE=UI-R-A1-ds-d-03-0-UI /FEA=EST /CNT=4 /TID=Rn.13089.1 /TIER=ConsEnd /STK=0 /UG=Rn.13089 /UG_TITLE=ESTs AA924403 leucine-rich repeats and calponin homology (CH) domain containing 1 Lrch1 502020 NM_001134727 0005515 // protein binding // inferred from electronic annotation 1393178_at BF551322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551322 /DB_XREF=gi:11661052 /DB_XREF=UI-R-C0-il-g-12-0-UI.r1 /CLONE=UI-R-C0-il-g-12-0-UI /FEA=EST /CNT=4 /TID=Rn.72652.1 /TIER=ConsEnd /STK=0 /UG=Rn.72652 /UG_TITLE=ESTs BF551322 solute carrier family 25, member 44 Slc25a44 365841 NM_001108947 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1393179_at BF553172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF553172 /DB_XREF=gi:11662902 /DB_XREF=UI-R-C2-nj-c-05-0-UI.r1 /CLONE=UI-R-C2-nj-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.47848.1 /TIER=ConsEnd /STK=0 /UG=Rn.47848 /UG_TITLE=ESTs BF553172 1393180_at AI011492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011492 /DB_XREF=gi:4133432 /DB_XREF=EST205943 /CLONE=ROVAV66 /FEA=EST /CNT=4 /TID=Rn.23300.1 /TIER=ConsEnd /STK=0 /UG=Rn.23300 /UG_TITLE=ESTs, Moderately similar to JC5707 HYA22 protein (H.sapiens) AI011492 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 Ctdsp1 363249 NM_001128079 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006470 // protein dephosphorylation // not recorded 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded /// 0008420 // CTD phosphatase activity // not recorded /// 0016791 // phosphatase activity // inferred from electronic annotation 1393181_at BG663084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663084 /DB_XREF=gi:13885006 /DB_XREF=DRA08A06 /CLONE=DRA08A06 /FEA=EST /CNT=4 /TID=Rn.63895.1 /TIER=ConsEnd /STK=0 /UG=Rn.63895 /UG_TITLE=ESTs BG663084 neurofascin Nfasc 116690 NM_001160313 /// NM_001160314 /// NM_001160315 /// NM_053909 0007155 // cell adhesion // inferred from electronic annotation /// 0007411 // axon guidance // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007422 // peripheral nervous system development // inferred from expression pattern /// 0042552 // myelination // inferred from expression pattern /// 0050808 // synapse organization // inferred from electronic annotation /// 0050808 // synapse organization // not recorded 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0033268 // node of Ranvier // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393182_at AW917501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917501 /DB_XREF=gi:8083253 /DB_XREF=EST348805 /CLONE=RGIEE61 /FEA=EST /CNT=4 /TID=Rn.22825.1 /TIER=ConsEnd /STK=0 /UG=Rn.22825 /UG_TITLE=ESTs AW917501 chemokine (C-X-C motif) ligand 3 Cxcl3 171551 NM_138522 0006935 // chemotaxis // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from mutant phenotype /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // inferred from direct assay /// 0030593 // neutrophil chemotaxis // not recorded /// 0030593 // neutrophil chemotaxis // non-traceable author statement /// 0030593 // neutrophil chemotaxis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008009 // chemokine activity // inferred from direct assay /// 0008009 // chemokine activity // not recorded /// 0008009 // chemokine activity // inferred from electronic annotation 1393183_at H33503 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33503 /DB_XREF=gi:978920 /DB_XREF=EST109577 /CLONE=RPNAT02 /FEA=EST /CNT=4 /TID=Rn.62294.1 /TIER=ConsEnd /STK=0 /UG=Rn.62294 /UG_TITLE=ESTs H33503 StAR-related lipid transfer (START) domain containing 5 Stard5 502348 NM_001192011 /// XM_001068254 /// XM_577816 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // not recorded 0005829 // cytosol // not recorded 0015485 // cholesterol binding // inferred from electronic annotation /// 0017127 // cholesterol transporter activity // inferred from electronic annotation 1393184_at BF420805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420805 /DB_XREF=gi:11408794 /DB_XREF=UI-R-BJ2-bqa-d-08-0-UI.s1 /CLONE=UI-R-BJ2-bqa-d-08-0-UI /FEA=EST /CNT=4 /TID=Rn.7695.1 /TIER=ConsEnd /STK=0 /UG=Rn.7695 /UG_TITLE=ESTs BF420805 1393185_at BF283249 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283249 /DB_XREF=gi:11214319 /DB_XREF=EST447840 /CLONE=RGIDZ35 /FEA=EST /CNT=4 /TID=Rn.11321.1 /TIER=ConsEnd /STK=0 /UG=Rn.11321 /UG_TITLE=ESTs BF283249 similar to Centrosomal protein of 27 kDa (Cep27 protein) LOC691918 691918 XM_001080091 /// XM_002726164 /// XM_002726165 1393186_at BE117182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117182 /DB_XREF=gi:8509287 /DB_XREF=UI-R-BS1-aym-g-10-0-UI.s1 /CLONE=UI-R-BS1-aym-g-10-0-UI /FEA=EST /CNT=4 /TID=Rn.18611.2 /TIER=ConsEnd /STK=0 /UG=Rn.18611 /UG_TITLE=ESTs BE117182 transmembrane protein 167B-like LOC100363708 100363708 XM_002725828 1393187_at BF417625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417625 /DB_XREF=gi:11405614 /DB_XREF=UI-R-CN0-blq-c-09-0-UI.s1 /CLONE=UI-R-CN0-blq-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.19349.1 /TIER=ConsEnd /STK=0 /UG=Rn.19349 /UG_TITLE=ESTs BF417625 1393188_at BF548232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548232 /DB_XREF=gi:11639339 /DB_XREF=UI-R-A0-aa-d-04-0-UI.r1 /CLONE=UI-R-A0-aa-d-04-0-UI /FEA=EST /CNT=4 /TID=Rn.23919.2 /TIER=ConsEnd /STK=0 /UG=Rn.23919 /UG_TITLE=ESTs, Weakly similar to HUD RAT PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD HOMOLOG (R.norvegicus) BF548232 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R) Elavl1 363854 NM_001108848 0048255 // mRNA stabilization // not recorded /// 0070935 // 3'-UTR-mediated mRNA stabilization // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0042802 // identical protein binding // not recorded 1393189_at BF414655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414655 /DB_XREF=gi:11402644 /DB_XREF=UI-R-BJ2-bor-c-12-0-UI.s1 /CLONE=UI-R-BJ2-bor-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.3884.2 /TIER=ConsEnd /STK=0 /UG=Rn.3884 /UG_TITLE=ESTs, Highly similar to 1903159A monoamine oxidase A (R.norvegicus) BF414655 Monoamine oxidase A Maoa 29253 NM_033653 0006584 // catecholamine metabolic process // inferred from electronic annotation /// 0042135 // neurotransmitter catabolic process // inferred from electronic annotation /// 0042420 // dopamine catabolic process // not recorded /// 0042424 // catecholamine catabolic process // non-traceable author statement /// 0042428 // serotonin metabolic process // inferred from direct assay /// 0042428 // serotonin metabolic process // inferred from mutant phenotype /// 0042443 // phenylethylamine metabolic process // inferred from direct assay /// 0042443 // phenylethylamine metabolic process // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from direct assay /// 0005741 // mitochondrial outer membrane // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008131 // primary amine oxidase activity // inferred from direct assay /// 0008131 // primary amine oxidase activity // inferred from mutant phenotype /// 0008131 // primary amine oxidase activity // not recorded /// 0008131 // primary amine oxidase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from direct assay /// 0050660 // FAD or FADH2 binding // inferred from mutant phenotype /// 0051378 // serotonin binding // inferred from direct assay /// 0051378 // serotonin binding // inferred from mutant phenotype 1393190_at AA900732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900732 /DB_XREF=gi:4233227 /DB_XREF=UI-R-E0-di-a-10-0-UI.s1 /CLONE=UI-R-E0-di-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.15100.1 /TIER=ConsEnd /STK=0 /UG=Rn.15100 /UG_TITLE=ESTs AA900732 1393191_at BF554733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554733 /DB_XREF=gi:11664463 /DB_XREF=UI-R-C0-jq-d-06-0-UI.r1 /CLONE=UI-R-C0-jq-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.23641.1 /TIER=ConsEnd /STK=0 /UG=Rn.23641 /UG_TITLE=ESTs BF554733 Na+/K+ transporting ATPase interacting 1 Nkain1 500557 XM_001062503 /// XM_575920 1393192_at AW528963 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528963 /DB_XREF=gi:7171377 /DB_XREF=UI-R-BU0-amx-f-01-0-UI.s1 /CLONE=UI-R-BU0-amx-f-01-0-UI /FEA=EST /CNT=4 /TID=Rn.42964.1 /TIER=ConsEnd /STK=0 /UG=Rn.42964 /UG_TITLE=ESTs AW528963 1393193_at BF522381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522381 /DB_XREF=gi:11630348 /DB_XREF=UI-R-C3-sz-f-02-0-UI.r2 /CLONE=UI-R-C3-sz-f-02-0-UI /FEA=EST /CNT=4 /TID=Rn.23750.1 /TIER=ConsEnd /STK=0 /UG=Rn.23750 /UG_TITLE=ESTs BF522381 RNA pseudouridylate synthase domain containing 2 Rpusd2 311326 NM_001135845 0001522 // pseudouridine synthesis // inferred from electronic annotation /// 0009451 // RNA modification // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0009982 // pseudouridine synthase activity // inferred from electronic annotation 1393194_at BF558732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558732 /DB_XREF=gi:11668462 /DB_XREF=UI-R-A1-ds-a-07-0-UI.r1 /CLONE=UI-R-A1-ds-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.9103.1 /TIER=ConsEnd /STK=0 /UG=Rn.9103 /UG_TITLE=ESTs BF558732 bromodomain adjacent to zinc finger domain, 1B Baz1b 368002 NM_001191916 /// XM_001077467 /// XM_347166 0003007 // heart morphogenesis // not recorded /// 0006302 // double-strand break repair // not recorded /// 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006333 // chromatin assembly or disassembly // not recorded /// 0006337 // nucleosome disassembly // not recorded /// 0006338 // chromatin remodeling // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0016572 // histone phosphorylation // not recorded /// 0034725 // DNA replication-dependent nucleosome disassembly // inferred from electronic annotation /// 0034725 // DNA replication-dependent nucleosome disassembly // not recorded /// 0043044 // ATP-dependent chromatin remodeling // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // not recorded /// 0048096 // chromatin-mediated maintenance of transcription // not recorded 0000793 // condensed chromosome // inferred from electronic annotation /// 0000793 // condensed chromosome // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005721 // centromeric heterochromatin // inferred from electronic annotation /// 0005721 // centromeric heterochromatin // not recorded /// 0016585 // chromatin remodeling complex // not recorded /// 0043596 // nuclear replication fork // not recorded /// 0070603 // SWI/SNF-type complex // inferred from electronic annotation /// 0070603 // SWI/SNF-type complex // not recorded 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0030546 // receptor activator activity // inferred from electronic annotation /// 0030546 // receptor activator activity // not recorded /// 0032947 // protein complex scaffold // inferred from electronic annotation /// 0032947 // protein complex scaffold // not recorded /// 0035173 // histone kinase activity // inferred from electronic annotation /// 0035173 // histone kinase activity // not recorded /// 0042393 // histone binding // not recorded /// 0042809 // vitamin D receptor binding // inferred from electronic annotation /// 0042809 // vitamin D receptor binding // not recorded /// 0070577 // histone acetyl-lysine binding // inferred from electronic annotation /// 0070577 // histone acetyl-lysine binding // not recorded 1393195_at AI045632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045632 /DB_XREF=gi:3292451 /DB_XREF=UI-R-C1-ka-f-08-0-UI.s1 /CLONE=UI-R-C1-ka-f-08-0-UI /FEA=EST /CNT=4 /TID=Rn.20903.1 /TIER=ConsEnd /STK=0 /UG=Rn.20903 /UG_TITLE=ESTs AI045632 1393196_at BE104114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104114 /DB_XREF=gi:8496209 /DB_XREF=UI-R-BX0-ark-h-03-0-UI.s1 /CLONE=UI-R-BX0-ark-h-03-0-UI /FEA=EST /CNT=4 /TID=Rn.48606.1 /TIER=ConsEnd /STK=0 /UG=Rn.48606 /UG_TITLE=ESTs BE104114 kelch-like 23 (Drosophila) Klhl23 311114 NM_001134504 0005515 // protein binding // inferred from electronic annotation 1393197_at BG376055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376055 /DB_XREF=gi:13300527 /DB_XREF=UI-R-CT0-bum-a-02-0-UI.s1 /CLONE=UI-R-CT0-bum-a-02-0-UI /FEA=EST /CNT=4 /TID=Rn.48816.1 /TIER=ConsEnd /STK=0 /UG=Rn.48816 /UG_TITLE=ESTs BG376055 abhydrolase domain containing 8 Abhd8 306338 NM_001107301 0003824 // catalytic activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1393198_at AW920606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920606 /DB_XREF=gi:8086419 /DB_XREF=EST351910 /CLONE=RGIGZ60 /FEA=EST /CNT=4 /TID=Rn.29060.1 /TIER=ConsEnd /STK=0 /UG=Rn.29060 /UG_TITLE=ESTs, Weakly similar to PIMT_DROME PROTEIN-L-ISOASPARTATE(D-ASPARTATE) O-METHYLTRANSFERASE (PROTEIN-BETA-ASPARTATE METHYLTRANSFERASE) (PIMT) (PROTEIN L-ISOASPARTYLD-ASPARTYL METHYLTRANSFERASE) (L-ISOASPARTYL PROTEIN CARBOXYL METHYLTRANSFERASE) (D.melanogaster) AW920606 hypothetical LOC366300 LOC366300 366300 XM_002726499 /// XM_002729457 0006464 // protein modification process // inferred from electronic annotation 0004719 // protein-L-isoaspartate (D-aspartate) O-methyltransferase activity // inferred from electronic annotation 1393199_at AA955145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955145 /DB_XREF=gi:4238818 /DB_XREF=UI-R-A1-ez-c-09-0-UI.s2 /CLONE=UI-R-A1-ez-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.8830.1 /TIER=ConsEnd /STK=0 /UG=Rn.8830 /UG_TITLE=ESTs, Highly similar to (Segment 1 of 2) XE169 PROTEIN (M.musculus) AA955145 similar to Jumonji/ARID domain-containing protein 1C (SmcX protein) RGD1560601 317432 XM_001064297 /// XM_241817 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393200_at AI500827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI500827 /DB_XREF=gi:4398678 /DB_XREF=UI-R-C2p-rq-f-10-0-UI.s1 /CLONE=UI-R-C2p-rq-f-10-0-UI /FEA=EST /CNT=4 /TID=Rn.23430.1 /TIER=ConsEnd /STK=0 /UG=Rn.23430 /UG_TITLE=ESTs AI500827 1393201_at BI283679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283679 /DB_XREF=gi:14935668 /DB_XREF=UI-R-CW0s-ccg-d-12-0-UI.s1 /CLONE=UI-R-CW0s-ccg-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.54706.1 /TIER=ConsEnd /STK=0 /UG=Rn.54706 /UG_TITLE=ESTs, Moderately similar to I49065 lymphoid-restricted membrane protein - mouse (M.musculus) BI283679 lymphoid-restricted membrane protein Lrmp 500361 XM_001074768 /// XM_575718 1393202_a_at BF414160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414160 /DB_XREF=gi:11402149 /DB_XREF=UI-R-BJ2-bon-a-12-0-UI.s1 /CLONE=UI-R-BJ2-bon-a-12-0-UI /FEA=EST /CNT=4 /TID=Rn.31564.2 /TIER=ConsEnd /STK=0 /UG=Rn.31564 /UG_TITLE=ESTs, Weakly similar to PCB3_MOUSE POLY(RC)-BINDING PROTEIN 3 (ALPHA-CP3) (M.musculus) BF414160 Insulin-like growth factor 2 mRNA binding protein 3 Igf2bp3 312320 NM_001047888 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // not recorded /// 0005515 // protein binding // not recorded /// 0048027 // mRNA 5'-UTR binding // not recorded 1393203_at BG665886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665886 /DB_XREF=gi:13887808 /DB_XREF=DRACKA03 /CLONE=DRACKA03 /FEA=EST /CNT=4 /TID=Rn.38204.1 /TIER=ConsEnd /STK=0 /UG=Rn.38204 /UG_TITLE=ESTs, Weakly similar to YOU2_CAEEL HYPOTHETICAL 12.5 KD PROTEIN ZK637.2 IN CHROMOSOME III (C.elegans) BG665886 family with sequence similarity 136, member A Fam136a 297415 NM_001106605 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // not recorded 1393204_at AI711190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711190 /DB_XREF=gi:5000966 /DB_XREF=UI-R-AE1-zc-c-03-0-UI.s1 /CLONE=UI-R-AE1-zc-c-03-0-UI /FEA=EST /CNT=4 /TID=Rn.13517.1 /TIER=ConsEnd /STK=0 /UG=Rn.13517 /UG_TITLE=ESTs AI711190 sideroflexin 4 Sfxn4 361778 NM_001108527 0006812 // cation transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation 0008324 // cation transmembrane transporter activity // inferred from electronic annotation 1393205_at AA997182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997182 /DB_XREF=gi:4282145 /DB_XREF=UI-R-C0-hs-g-02-0-UI.s1 /CLONE=UI-R-C0-hs-g-02-0-UI /FEA=EST /CNT=4 /TID=Rn.9160.1 /TIER=ConsEnd /STK=0 /UG=Rn.9160 /UG_TITLE=ESTs, Highly similar to S55370 RNA polymerase II chain hRPB17 (H.sapiens) AA997182 Polymerase (RNA) II (DNA directed) polypeptide H Polr2h 498109 NM_001134789 0006350 // transcription // inferred from electronic annotation 1393206_at BM383684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383684 /DB_XREF=gi:18183737 /DB_XREF=UI-R-DM1-ckb-a-21-0-UI.s1 /CLONE=UI-R-DM1-ckb-a-21-0-UI /FEA=EST /CNT=4 /TID=Rn.35121.1 /TIER=ConsEnd /STK=0 /UG=Rn.35121 /UG_TITLE=ESTs BM383684 1393207_at BF566116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF566116 /DB_XREF=gi:11675846 /DB_XREF=UI-R-BT1-ajy-h-04-0-UI.r1 /CLONE=UI-R-BT1-ajy-h-04-0-UI /FEA=EST /CNT=4 /TID=Rn.16335.3 /TIER=ConsEnd /STK=0 /UG=Rn.16335 /UG_TITLE=ESTs BF566116 1393208_at BF408465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408465 /DB_XREF=gi:11396440 /DB_XREF=UI-R-BJ2-bre-a-12-0-UI.s1 /CLONE=UI-R-BJ2-bre-a-12-0-UI /FEA=EST /CNT=4 /TID=Rn.55418.2 /TIER=ConsEnd /STK=0 /UG=Rn.55418 /UG_TITLE=ESTs BF408465 myc target 1 Myct1 292264 NM_001106207 1393209_at AI547423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547423 /DB_XREF=gi:4464911 /DB_XREF=UI-R-C3-tf-h-06-0-UI.s1 /CLONE=UI-R-C3-tf-h-06-0-UI /FEA=EST /CNT=4 /TID=Rn.22715.1 /TIER=ConsEnd /STK=0 /UG=Rn.22715 /UG_TITLE=ESTs AI547423 Bartter syndrome, infantile, with sensorineural deafness (Barttin) Bsnd 192675 NM_138979 0006821 // chloride transport // inferred from mutant phenotype 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from sequence or structural similarity /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from sequence or structural similarity /// 0043234 // protein complex // inferred from electronic annotation 0005254 // chloride channel activity // not recorded /// 0005254 // chloride channel activity // inferred from sequence or structural similarity /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017081 // chloride channel regulator activity // inferred from mutant phenotype 1393210_at AI070116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070116 /DB_XREF=gi:3396367 /DB_XREF=UI-R-Y0-lu-b-11-0-UI.s1 /CLONE=UI-R-Y0-lu-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.21254.1 /TIER=ConsEnd /STK=0 /UG=Rn.21254 /UG_TITLE=ESTs, Weakly similar to LUMICAN PRECURSOR (R.norvegicus) AI070116 extracellular matrix protein 2-like LOC100365207 100365207 XR_085657 0005515 // protein binding // inferred from electronic annotation 1393211_at AW144047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144047 /DB_XREF=gi:6163946 /DB_XREF=EST294343 /CLONE=RGICG04 /FEA=EST /CNT=4 /TID=Rn.24592.1 /TIER=ConsEnd /STK=0 /UG=Rn.24592 /UG_TITLE=ESTs AW144047 1393212_at AA964027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964027 /DB_XREF=gi:4278903 /DB_XREF=UI-R-C0-gu-e-04-0-UI.s1 /CLONE=UI-R-C0-gu-e-04-0-UI /FEA=EST /CNT=4 /TID=Rn.11678.1 /TIER=ConsEnd /STK=0 /UG=Rn.11678 /UG_TITLE=ESTs AA964027 1393213_at BE098333 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098333 /DB_XREF=gi:8490196 /DB_XREF=UI-R-BJ1-asy-d-12-0-UI.s1 /CLONE=UI-R-BJ1-asy-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.15202.1 /TIER=ConsEnd /STK=0 /UG=Rn.15202 /UG_TITLE=ESTs, Weakly similar to CYCK_MOUSE CYCLIN K (M.musculus) BE098333 cyclin L2 Ccnl2 298686 NM_001013094 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 1393214_at BG371744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371744 /DB_XREF=gi:13268281 /DB_XREF=UI-R-CV0-brh-g-01-0-UI.s1 /CLONE=UI-R-CV0-brh-g-01-0-UI /FEA=EST /CNT=4 /TID=Rn.27893.1 /TIER=ConsEnd /STK=0 /UG=Rn.27893 /UG_TITLE=ESTs BG371744 1393215_at AW523847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523847 /DB_XREF=gi:7166232 /DB_XREF=UI-R-BJ0p-aij-g-02-0-UI.s1 /CLONE=UI-R-BJ0p-aij-g-02-0-UI /FEA=EST /CNT=4 /TID=Rn.38932.1 /TIER=ConsEnd /STK=0 /UG=Rn.38932 /UG_TITLE=ESTs, Weakly similar to AINX RAT ALPHA-INTERNEXIN (R.norvegicus) AW523847 intermediate filament family orphan 1 Iffo1 362437 NM_001108647 1393216_at BI282044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282044 /DB_XREF=gi:14932401 /DB_XREF=UI-R-CU0s-cbv-g-12-0-UI.s1 /CLONE=UI-R-CU0s-cbv-g-12-0-UI /FEA=EST /CNT=4 /TID=Rn.15634.1 /TIER=ConsEnd /STK=0 /UG=Rn.15634 /UG_TITLE=ESTs BI282044 solute carrier family 33 (acetyl-CoA transporter), member 1 Slc33a1 64018 NM_022252 0006810 // transport // inferred from electronic annotation /// 0007417 // central nervous system development // non-traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008521 // acetyl-CoA transporter activity // non-traceable author statement 1393217_at BF282804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282804 /DB_XREF=gi:11213874 /DB_XREF=EST447395 /CLONE=RGIDT40 /FEA=EST /CNT=4 /TID=Rn.23674.1 /TIER=ConsEnd /STK=0 /UG=Rn.23674 /UG_TITLE=ESTs, Weakly similar to ABG2_HUMAN ATP-BINDING CASSETTE, SUB-FAMILY G, MEMBER 2 (PLACENTA-SPECIFIC ATP-BINDING CASSETTE TRANSPORTER) (BREAST CANCER RESISTANCE PROTEIN) (H.sapiens) BF282804 ATP-binding cassette, sub-family G (WHITE), member 3-like 1 Abcg3l1 289453 NM_001004076 0016020 // membrane // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation 1393218_at AI176155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176155 /DB_XREF=gi:3726793 /DB_XREF=EST219736 /CLONE=ROVBL52 /FEA=EST /CNT=4 /TID=Rn.20310.2 /TIER=ConsEnd /STK=0 /UG=Rn.20310 /UG_TITLE=ESTs, Weakly similar to T00051 hypothetical protein KIAA0404 (H.sapiens) AI176155 Similar to 2410024A21Rik protein RGD1304878 314415 XR_005460 /// XR_009633 1393219_at BF394142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394142 /DB_XREF=gi:11379006 /DB_XREF=UI-R-CA0-bha-b-12-0-UI.s1 /CLONE=UI-R-CA0-bha-b-12-0-UI /FEA=EST /CNT=4 /TID=Rn.20031.2 /TIER=ConsEnd /STK=0 /UG=Rn.20031 /UG_TITLE=ESTs, Highly similar to COMPLEMENT C2 PRECURSOR (M.musculus) BF394142 complement component 2 C2 24231 NM_172222 0006508 // proteolysis // inferred from electronic annotation /// 0006956 // complement activation // inferred from electronic annotation /// 0006956 // complement activation // inferred from direct assay /// 0006957 // complement activation, alternative pathway // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1393220_at AI502723 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502723 /DB_XREF=gi:4400574 /DB_XREF=UI-R-C1-lf-f-09-0-UI.s1 /CLONE=UI-R-C1-lf-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.28091.1 /TIER=ConsEnd /STK=0 /UG=Rn.28091 /UG_TITLE=ESTs AI502723 1393221_at AA866264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866264 /DB_XREF=gi:4229151 /DB_XREF=UI-R-A0-bg-a-06-0-UI.s1 /CLONE=UI-R-A0-bg-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.14713.1 /TIER=ConsEnd /STK=0 /UG=Rn.14713 /UG_TITLE=ESTs, Weakly similar to PE2R RAT 20-ALPHA-HYDROXYSTEROID DEHYDROGENASE (R.norvegicus) AA866264 similar to 20-alpha-hydroxysteroid dehydrogenase RGD1564865 498789 NM_001164396 0055114 // oxidation reduction // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation 1393222_at AI058449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058449 /DB_XREF=gi:3332226 /DB_XREF=UI-R-C1-kn-h-07-0-UI.s1 /CLONE=UI-R-C1-kn-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.18879.2 /TIER=ConsEnd /STK=0 /UG=Rn.18879 /UG_TITLE=ESTs AI058449 vacuolar protein sorting 18 homolog (S. cerevisiae) Vps18 296083 NM_001106499 0007032 // endosome organization // inferred from electronic annotation /// 0007032 // endosome organization // not recorded /// 0007040 // lysosome organization // inferred from electronic annotation /// 0007040 // lysosome organization // not recorded 0005769 // early endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005884 // actin filament // inferred from electronic annotation /// 0005884 // actin filament // not recorded /// 0030897 // HOPS complex // inferred from electronic annotation /// 0030897 // HOPS complex // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1393223_a_at BE115227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115227 /DB_XREF=gi:8507332 /DB_XREF=UI-R-BJ1-avs-g-08-0-UI.s1 /CLONE=UI-R-BJ1-avs-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.20168.1 /TIER=ConsEnd /STK=0 /UG=Rn.20168 /UG_TITLE=ESTs BE115227 similar to RIKEN cDNA 1110008J03 RGD1306772 288683 NM_001044226 1393224_at AW529774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529774 /DB_XREF=gi:7172188 /DB_XREF=UI-R-BU0-amt-b-06-0-UI.s1 /CLONE=UI-R-BU0-amt-b-06-0-UI /FEA=EST /CNT=4 /TID=Rn.43191.1 /TIER=ConsEnd /STK=0 /UG=Rn.43191 /UG_TITLE=ESTs AW529774 1393225_at BE115446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115446 /DB_XREF=gi:8507551 /DB_XREF=UI-R-BS1-axu-h-07-0-UI.s1 /CLONE=UI-R-BS1-axu-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.44114.1 /TIER=ConsEnd /STK=0 /UG=Rn.44114 /UG_TITLE=ESTs BE115446 Similar to a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 10 LOC314655 314655 NM_001034930 0006508 // proteolysis // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393226_at BI275559 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275559 /DB_XREF=gi:14919589 /DB_XREF=UI-R-CX0-bwy-g-07-0-UI.s1 /CLONE=UI-R-CX0-bwy-g-07-0-UI /FEA=EST /CNT=4 /TID=Rn.7774.1 /TIER=ConsEnd /STK=0 /UG=Rn.7774 /UG_TITLE=ESTs BI275559 1393227_at AI045138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045138 /DB_XREF=gi:3291957 /DB_XREF=UI-R-C1-kg-h-02-0-UI.s1 /CLONE=UI-R-C1-kg-h-02-0-UI /FEA=EST /CNT=4 /TID=Rn.16123.1 /TIER=ConsEnd /STK=0 /UG=Rn.16123 /UG_TITLE=ESTs, Weakly similar to S26689 hypothetical protein hc1 - mouse (M.musculus) AI045138 1393228_at AA957707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957707 /DB_XREF=gi:4277597 /DB_XREF=UI-R-E1-fw-h-03-0-UI.s1 /CLONE=UI-R-E1-fw-h-03-0-UI /FEA=EST /CNT=4 /TID=Rn.9366.1 /TIER=ConsEnd /STK=0 /UG=Rn.9366 /UG_TITLE=ESTs, Weakly similar to HPPD RAT 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE (R.norvegicus) AA957707 4-hydroxyphenylpyruvate dioxygenase-like Hpdl 313521 NM_001014068 0009072 // aromatic amino acid family metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003868 // 4-hydroxyphenylpyruvate dioxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393229_at BI300443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300443 /DB_XREF=gi:14976723 /DB_XREF=UI-R-CV2-cif-a-10-0-UI.s1 /CLONE=UI-R-CV2-cif-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.38462.1 /TIER=ConsEnd /STK=0 /UG=Rn.38462 /UG_TITLE=ESTs, Moderately similar to PM17 MOUSE MELANOCYTE PROTEIN PMEL 17 PRECURSOR (M.musculus) BI300443 silver homolog (mouse) Silv 362818 NM_001108729 0032438 // melanosome organization // not recorded /// 0042438 // melanin biosynthetic process // not recorded 0005789 // endoplasmic reticulum membrane // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0032585 // multivesicular body membrane // not recorded /// 0042470 // melanosome // not recorded 0005515 // protein binding // not recorded 1393230_s_at AI136714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136714 /DB_XREF=gi:3637491 /DB_XREF=UI-R-C2p-nw-b-08-0-UI.s1 /CLONE=UI-R-C2p-nw-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.63753.1 /TIER=ConsEnd /STK=0 /UG=Rn.63753 /UG_TITLE=ESTs AI136714 similar to KIAA0564 protein RGD1308772 290381 XM_002725136 /// XM_214237 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1393231_at BM386467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386467 /DB_XREF=gi:18186520 /DB_XREF=UI-R-CN1-cjg-e-15-0-UI.s1 /CLONE=UI-R-CN1-cjg-e-15-0-UI /FEA=EST /CNT=4 /TID=Rn.11876.1 /TIER=ConsEnd /STK=0 /UG=Rn.11876 /UG_TITLE=ESTs BM386467 protein phosphatase 4, regulatory subunit 2 Ppp4r2 297486 NM_001106613 0005515 // protein binding // not recorded 1393232_at BI280124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280124 /DB_XREF=gi:14928608 /DB_XREF=UI-R-DD0-cbc-h-09-0-UI.s1 /CLONE=UI-R-DD0-cbc-h-09-0-UI /FEA=EST /CNT=4 /TID=Rn.1675.1 /TIER=ConsEnd /STK=0 /UG=Rn.1675 /UG_TITLE=ESTs, Weakly similar to METALLOTHIONEIN-I (R.norvegicus) BI280124 metallothionein 4 Mt4 498911 NM_001126084 0006875 // cellular metal ion homeostasis // not recorded 0046872 // metal ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // not recorded 1393233_at BG381676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381676 /DB_XREF=gi:13306148 /DB_XREF=UI-R-CT0-bue-b-03-0-UI.s1 /CLONE=UI-R-CT0-bue-b-03-0-UI /FEA=EST /CNT=4 /TID=Rn.24.1 /TIER=ConsEnd /STK=0 /UG=Rn.24 /UG_TITLE=ESTs BG381676 armadillo repeat containing 6 Armc6 306352 NM_001107306 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393234_at BI285850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285850 /DB_XREF=gi:14939910 /DB_XREF=UI-R-CX0s-ccv-f-03-0-UI.s1 /CLONE=UI-R-CX0s-ccv-f-03-0-UI /FEA=EST /CNT=4 /TID=Rn.63956.1 /TIER=ConsEnd /STK=0 /UG=Rn.63956 /UG_TITLE=ESTs, Weakly similar to T17228 hypothetical protein DKFZp434D146.1 (H.sapiens) BI285850 hypothetical protein LOC687105 LOC687105 687105 NM_001127591 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1393235_at AI059968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059968 /DB_XREF=gi:3333745 /DB_XREF=UI-R-C1-la-e-02-0-UI.s1 /CLONE=UI-R-C1-la-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.19328.1 /TIER=ConsEnd /STK=0 /UG=Rn.19328 /UG_TITLE=ESTs AI059968 1393236_at AI137233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137233 /DB_XREF=gi:3638010 /DB_XREF=UI-R-C2p-oj-h-08-0-UI.s1 /CLONE=UI-R-C2p-oj-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.27358.1 /TIER=ConsEnd /STK=0 /UG=Rn.27358 /UG_TITLE=ESTs AI137233 RIO kinase 3 (yeast) Riok3 361293 NM_001108423 0006468 // protein phosphorylation // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1393237_at AI577833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577833 /DB_XREF=gi:4562209 /DB_XREF=UI-R-AB0-vw-a-06-0-UI.s1 /CLONE=UI-R-AB0-vw-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.38101.1 /TIER=ConsEnd /STK=0 /UG=Rn.38101 /UG_TITLE=ESTs, Highly similar to eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked (Mus musculus) (M.musculus) AI577833 eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked Eif2s3y 100312984 NM_001167666 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008135 // translation factor activity, nucleic acid binding // inferred from electronic annotation 1393238_at AA900649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900649 /DB_XREF=gi:4233143 /DB_XREF=UI-R-E0-di-e-10-0-UI.s1 /CLONE=UI-R-E0-di-e-10-0-UI /FEA=EST /CNT=4 /TID=Rn.8233.1 /TIER=ConsEnd /STK=0 /UG=Rn.8233 /UG_TITLE=ESTs AA900649 1393239_at BI296413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296413 /DB_XREF=gi:14960812 /DB_XREF=UI-R-CV2-cgq-h-03-0-UI.s1 /CLONE=UI-R-CV2-cgq-h-03-0-UI /FEA=EST /CNT=4 /TID=Rn.14754.1 /TIER=ConsEnd /STK=0 /UG=Rn.14754 /UG_TITLE=ESTs BI296413 1393240_at AI112299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112299 /DB_XREF=gi:3512248 /DB_XREF=UI-R-Y0-mo-h-09-0-UI.s2 /CLONE=UI-R-Y0-mo-h-09-0-UI /FEA=EST /CNT=4 /TID=Rn.16151.1 /TIER=ConsEnd /STK=0 /UG=Rn.16151 /UG_TITLE=ESTs, Weakly similar to FBL3_RAT EGF-CONTAINING FIBULIN-LIKE EXTRACELLULAR MATRIX PROTEIN 1 PRECURSOR (FIBULIN-3) (FIBL-3) (T16 PROTEIN) (R.norvegicus) AI112299 EGF-containing fibulin-like extracellular matrix protein 2 Efemp2 293677 NM_001005907 0007596 // blood coagulation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1393241_at BI295197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295197 /DB_XREF=gi:14958401 /DB_XREF=UI-R-DK0-ceg-h-07-0-UI.s1 /CLONE=UI-R-DK0-ceg-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.48167.1 /TIER=ConsEnd /STK=0 /UG=Rn.48167 /UG_TITLE=ESTs, Weakly similar to MCT7 RAT MAST CELL PROTEASE 7 PRECURSOR (R.norvegicus) BI295197 protease, serine, 32 Prss32 302970 NM_001106983 0006508 // proteolysis // inferred from electronic annotation /// 0008152 // metabolic process // not recorded 0016020 // membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // not recorded /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1393242_at BE104107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104107 /DB_XREF=gi:8496207 /DB_XREF=UI-R-BX0-ark-g-11-0-UI.s1 /CLONE=UI-R-BX0-ark-g-11-0-UI /FEA=EST /CNT=4 /TID=Rn.34595.1 /TIER=ConsEnd /STK=0 /UG=Rn.34595 /UG_TITLE=ESTs BE104107 small nuclear ribonucleoprotein 25 (U11/U12) Snrnp25 287170 XM_001062061 /// XM_213260 0005634 // nucleus // not recorded /// 0005689 // U12-type spliceosomal complex // not recorded 1393243_at BG372316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372316 /DB_XREF=gi:13268853 /DB_XREF=UI-R-CV0-brr-c-06-0-UI.s1 /CLONE=UI-R-CV0-brr-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.19232.2 /TIER=ConsEnd /STK=0 /UG=Rn.19232 /UG_TITLE=ESTs BG372316 hypothetical protein LOC100125367 LOC100125367 100125367 NM_001103357 1393244_at AW435274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435274 /DB_XREF=gi:6966581 /DB_XREF=UI-R-BJ0p-agb-f-04-0-UI.s1 /CLONE=UI-R-BJ0p-agb-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.16098.1 /TIER=ConsEnd /STK=0 /UG=Rn.16098 /UG_TITLE=ESTs AW435274 Nuclear protein localization 4 homolog (S. cerevisiae) Nploc4 140639 NM_080577 0006944 // cellular membrane fusion // inferred from direct assay /// 0007030 // Golgi organization // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1393245_at AI029057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029057 /DB_XREF=gi:4295931 /DB_XREF=UI-R-C0-ik-h-01-0-UI.s1 /CLONE=UI-R-C0-ik-h-01-0-UI /FEA=EST /CNT=4 /TID=Rn.7279.1 /TIER=ConsEnd /STK=0 /UG=Rn.7279 /UG_TITLE=ESTs AI029057 Phytanoyl-CoA 2-hydroxylase Phyh 114209 NM_053674 0001561 // fatty acid alpha-oxidation // not recorded /// 0001561 // fatty acid alpha-oxidation // traceable author statement /// 0001561 // fatty acid alpha-oxidation // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation 0003824 // catalytic activity // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048244 // phytanoyl-CoA dioxygenase activity // inferred from direct assay /// 0048244 // phytanoyl-CoA dioxygenase activity // inferred from electronic annotation 1393246_at BG378670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378670 /DB_XREF=gi:13303142 /DB_XREF=UI-R-BT1-bnj-c-06-0-UI.s1 /CLONE=UI-R-BT1-bnj-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.15653.1 /TIER=ConsEnd /STK=0 /UG=Rn.15653 /UG_TITLE=ESTs BG378670 zinc finger, MYND-type containing 10 Zmynd10 363139 NM_001004284 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393247_at BI298190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298190 /DB_XREF=gi:14974470 /DB_XREF=UI-R-CV2-chg-d-06-0-UI.s1 /CLONE=UI-R-CV2-chg-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.23145.2 /TIER=ConsEnd /STK=0 /UG=Rn.23145 /UG_TITLE=ESTs BI298190 zinc finger protein 26 Zfp26 367033 NM_001108995 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393248_at BF407833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407833 /DB_XREF=gi:11395808 /DB_XREF=UI-R-BJ2-bqx-b-09-0-UI.s1 /CLONE=UI-R-BJ2-bqx-b-09-0-UI /FEA=EST /CNT=4 /TID=Rn.61090.1 /TIER=ConsEnd /STK=0 /UG=Rn.61090 /UG_TITLE=ESTs BF407833 NMD3 homolog (S. cerevisiae) Nmd3 310512 NM_001107682 1393249_at BF407924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407924 /DB_XREF=gi:11395899 /DB_XREF=UI-R-C3-sx-h-10-0-UI.s2 /CLONE=UI-R-C3-sx-h-10-0-UI /FEA=EST /CNT=4 /TID=Rn.24916.2 /TIER=ConsEnd /STK=0 /UG=Rn.24916 /UG_TITLE=ESTs BF407924 1393250_at BE095854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095854 /DB_XREF=gi:8486785 /DB_XREF=UI-R-BU0-apb-d-01-0-UI.s1 /CLONE=UI-R-BU0-apb-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.49370.1 /TIER=ConsEnd /STK=0 /UG=Rn.49370 /UG_TITLE=ESTs, Weakly similar to CKR3 MOUSE PROBABLE C-C CHEMOKINE RECEPTOR TYPE 3 (M.musculus) BE095854 similar to Duffy antigen/chemokine receptor (CD234 antigen) LOC689105 689105 XM_002724893 /// XM_002728033 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 1393251_at BM391286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391286 /DB_XREF=gi:18191339 /DB_XREF=UI-R-DY0-ckq-d-19-0-UI.s1 /CLONE=UI-R-DY0-ckq-d-19-0-UI /FEA=EST /CNT=4 /TID=Rn.14641.1 /TIER=ConsEnd /STK=0 /UG=Rn.14641 /UG_TITLE=ESTs BM391286 1393252_at AA996804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996804 /DB_XREF=gi:4280568 /DB_XREF=UI-R-C0-hh-g-12-0-UI.s1 /CLONE=UI-R-C0-hh-g-12-0-UI /FEA=EST /CNT=4 /TID=Rn.40243.1 /TIER=ConsEnd /STK=0 /UG=Rn.40243 /UG_TITLE=ESTs AA996804 1393253_at BF408799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408799 /DB_XREF=gi:11396774 /DB_XREF=UI-R-BT1-bne-e-02-0-UI.s1 /CLONE=UI-R-BT1-bne-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.46101.1 /TIER=ConsEnd /STK=0 /UG=Rn.46101 /UG_TITLE=ESTs BF408799 zinc finger protein 365 Zfp365 499425 NM_001025145 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1393254_at BF402382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402382 /DB_XREF=gi:11390357 /DB_XREF=UI-R-CA0-bhn-e-12-0-UI.s1 /CLONE=UI-R-CA0-bhn-e-12-0-UI /FEA=EST /CNT=4 /TID=Rn.57378.1 /TIER=ConsEnd /STK=0 /UG=Rn.57378 /UG_TITLE=ESTs BF402382 serine/threonine kinase 36 (fused homolog, Drosophila) Stk36 301516 NM_001173986 /// XM_001058046 /// XM_217435 0006468 // protein phosphorylation // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0051090 // regulation of transcription factor activity // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded 1393255_at AI136435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136435 /DB_XREF=gi:3637212 /DB_XREF=UI-R-C2p-ns-b-12-0-UI.s1 /CLONE=UI-R-C2p-ns-b-12-0-UI /FEA=EST /CNT=4 /TID=Rn.33169.1 /TIER=ConsEnd /STK=0 /UG=Rn.33169 /UG_TITLE=ESTs AI136435 keratin associated protein 13-like LOC100363236 100363236 XM_002727852 1393256_at AI137711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137711 /DB_XREF=gi:3638488 /DB_XREF=UI-R-C0-ii-g-03-0-UI.s1 /CLONE=UI-R-C0-ii-g-03-0-UI /FEA=EST /CNT=4 /TID=Rn.24530.1 /TIER=ConsEnd /STK=0 /UG=Rn.24530 /UG_TITLE=ESTs AI137711 selenophosphate synthetase 1 Sephs1 291314 NM_001104630 0003824 // catalytic activity // inferred from electronic annotation /// 0004756 // selenide, water dikinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1393257_at BI293905 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293905 /DB_XREF=gi:14955846 /DB_XREF=UI-R-DK0-cdw-d-07-0-UI.s1 /CLONE=UI-R-DK0-cdw-d-07-0-UI /FEA=EST /CNT=4 /TID=Rn.36190.1 /TIER=ConsEnd /STK=0 /UG=Rn.36190 /UG_TITLE=ESTs BI293905 CUG triplet repeat, RNA binding protein 1 Cugbp1 362160 NM_001025421 0006376 // mRNA splice site selection // inferred from electronic annotation /// 0006376 // mRNA splice site selection // not recorded /// 0006397 // mRNA processing // inferred from electronic annotation /// 0007286 // spermatid development // inferred from electronic annotation /// 0007286 // spermatid development // not recorded /// 0008380 // RNA splicing // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0043484 // regulation of RNA splicing // not recorded /// 0043484 // regulation of RNA splicing // inferred from sequence or structural similarity 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0031369 // translation initiation factor binding // inferred from electronic annotation /// 0031369 // translation initiation factor binding // not recorded /// 0042835 // BRE binding // not recorded 1393258_at AI112121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112121 /DB_XREF=gi:3512070 /DB_XREF=UI-R-Y0-mo-h-06-0-UI.s1 /CLONE=UI-R-Y0-mo-h-06-0-UI /FEA=EST /CNT=4 /TID=Rn.26725.1 /TIER=ConsEnd /STK=0 /UG=Rn.26725 /UG_TITLE=ESTs AI112121 1393259_at AI044342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044342 /DB_XREF=gi:3291245 /DB_XREF=UI-R-C0-is-a-12-0-UI.s1 /CLONE=UI-R-C0-is-a-12-0-UI /FEA=EST /CNT=4 /TID=Rn.15882.1 /TIER=ConsEnd /STK=0 /UG=Rn.15882 /UG_TITLE=ESTs AI044342 1393260_at BG661061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG661061 /DB_XREF=gi:18002915 /DB_XREF=GTRC1-1-58 /FEA=EST /CNT=4 /TID=Rn.41321.1 /TIER=ConsEnd /STK=0 /UG=Rn.41321 /UG_TITLE=ESTs BG661061 WDNM1 homolog LOC360228 360228 NM_001003706 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032496 // response to lipopolysaccharide // not recorded /// 0034612 // response to tumor necrosis factor // inferred from electronic annotation /// 0034612 // response to tumor necrosis factor // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0050872 // white fat cell differentiation // inferred from electronic annotation /// 0050872 // white fat cell differentiation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0010577 // metalloenzyme activator activity // inferred from electronic annotation /// 0010577 // metalloenzyme activator activity // not recorded /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1393261_at AI058850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058850 /DB_XREF=gi:3332627 /DB_XREF=UI-R-C1-jy-h-05-0-UI.s2 /CLONE=UI-R-C1-jy-h-05-0-UI /FEA=EST /CNT=6 /TID=Rn.19003.1 /TIER=ConsEnd /STK=0 /UG=Rn.19003 /UG_TITLE=ESTs AI058850 1393262_at BG379771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379771 /DB_XREF=gi:13304243 /DB_XREF=UI-R-CS0-btn-a-05-0-UI.s1 /CLONE=UI-R-CS0-btn-a-05-0-UI /FEA=EST /CNT=5 /TID=Rn.24450.1 /TIER=ConsEnd /STK=0 /UG=Rn.24450 /UG_TITLE=ESTs BG379771 1393263_at AW522530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522530 /DB_XREF=gi:7164915 /DB_XREF=UI-R-BO0-aha-e-08-0-UI.s1 /CLONE=UI-R-BO0-aha-e-08-0-UI /FEA=EST /CNT=5 /TID=Rn.15600.1 /TIER=ConsEnd /STK=0 /UG=Rn.15600 /UG_TITLE=ESTs AW522530 1393264_at BG664142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664142 /DB_XREF=gi:13886064 /DB_XREF=DRAAEF04 /CLONE=DRAAEF04 /FEA=EST /CNT=4 /TID=Rn.76534.1 /TIER=ConsEnd /STK=0 /UG=Rn.76534 /UG_TITLE=ESTs BG664142 consortin, connexin sorting protein Cnst 498297 XM_001060344 /// XM_573525 0042998 // positive regulation of Golgi to plasma membrane protein transport // not recorded 0005802 // trans-Golgi network // not recorded /// 0005886 // plasma membrane // not recorded /// 0030133 // transport vesicle // not recorded /// 0043234 // protein complex // not recorded 0005515 // protein binding // not recorded /// 0071253 // connexin binding // not recorded 1393265_at BF546659 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546659 /DB_XREF=gi:11637766 /DB_XREF=UI-R-C1-lh-h-01-0-UI.r1 /CLONE=UI-R-C1-lh-h-01-0-UI /FEA=EST /CNT=4 /TID=Rn.15397.1 /TIER=ConsEnd /STK=0 /UG=Rn.15397 /UG_TITLE=ESTs BF546659 Synaptotagmin binding, cytoplasmic RNA interacting protein Syncrip 363113 NM_001047916 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0070934 // CRD-mediated mRNA stabilization // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070937 // CRD-mediated mRNA stability complex // not recorded /// 0070937 // CRD-mediated mRNA stability complex // inferred from sequence or structural similarity /// 0071204 // histone pre-mRNA 3'end processing complex // not recorded /// 0071204 // histone pre-mRNA 3'end processing complex // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008143 // poly(A) RNA binding // not recorded 1393266_at AI029813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029813 /DB_XREF=gi:4301155 /DB_XREF=UI-R-C0-jn-c-04-0-UI.s1 /CLONE=UI-R-C0-jn-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.18162.1 /TIER=ConsEnd /STK=0 /UG=Rn.18162 /UG_TITLE=ESTs AI029813 1393267_at BI276726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276726 /DB_XREF=gi:14921901 /DB_XREF=UI-R-CX0-bxj-g-03-0-UI.s1 /CLONE=UI-R-CX0-bxj-g-03-0-UI /FEA=EST /CNT=4 /TID=Rn.46658.1 /TIER=ConsEnd /STK=0 /UG=Rn.46658 /UG_TITLE=ESTs BI276726 PC4 and SFRS1 interacting protein 1 Psip1 313323 NM_175765 0006350 // transcription // inferred from electronic annotation /// 0019047 // provirus integration // not recorded /// 0019059 // initiation of viral infection // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded 0003677 // DNA binding // inferred from electronic annotation 1393268_at AI071071 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071071 /DB_XREF=gi:3397286 /DB_XREF=UI-R-C2-no-e-09-0-UI.s1 /CLONE=UI-R-C2-no-e-09-0-UI /FEA=EST /CNT=4 /TID=Rn.21882.2 /TIER=ConsEnd /STK=0 /UG=Rn.21882 /UG_TITLE=ESTs AI071071 1393269_at BF386049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386049 /DB_XREF=gi:11370873 /DB_XREF=UI-R-CA0-bad-c-12-0-UI.s1 /CLONE=UI-R-CA0-bad-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.24292.1 /TIER=ConsEnd /STK=0 /UG=Rn.24292 /UG_TITLE=ESTs BF386049 1393270_at AI137131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137131 /DB_XREF=gi:3637908 /DB_XREF=UI-R-C2p-oe-f-11-0-UI.s1 /CLONE=UI-R-C2p-oe-f-11-0-UI /FEA=EST /CNT=4 /TID=Rn.24304.1 /TIER=ConsEnd /STK=0 /UG=Rn.24304 /UG_TITLE=ESTs, Moderately similar to S21976 probable RNA-directed DNA polymerase (R.norvegicus) AI137131 1393271_at AA955211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955211 /DB_XREF=gi:4237573 /DB_XREF=UI-R-A1-ej-e-04-0-UI.s1 /CLONE=UI-R-A1-ej-e-04-0-UI /FEA=EST /CNT=4 /TID=Rn.8711.1 /TIER=ConsEnd /STK=0 /UG=Rn.8711 /UG_TITLE=ESTs AA955211 Indian hedgehog Ihh 84399 NM_053384 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0001708 // cell fate specification // inferred from electronic annotation /// 0001708 // cell fate specification // not recorded /// 0001763 // morphogenesis of a branching structure // inferred from electronic annotation /// 0001763 // morphogenesis of a branching structure // not recorded /// 0001944 // vasculature development // inferred from electronic annotation /// 0001944 // vasculature development // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0003382 // epithelial cell morphogenesis // inferred from electronic annotation /// 0003382 // epithelial cell morphogenesis // not recorded /// 0003406 // retinal pigment epithelium development // inferred from electronic annotation /// 0003406 // retinal pigment epithelium development // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007389 // pattern specification process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009880 // embryonic pattern specification // inferred from electronic annotation /// 0009880 // embryonic pattern specification // not recorded /// 0009968 // negative regulation of signal transduction // inferred from direct assay /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016539 // intein-mediated protein splicing // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030704 // vitelline membrane formation // inferred from electronic annotation /// 0030704 // vitelline membrane formation // not recorded /// 0031016 // pancreas development // inferred from electronic annotation /// 0031016 // pancreas development // not recorded /// 0032332 // positive regulation of chondrocyte differentiation // inferred from mutant phenotype /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded /// 0043010 // camera-type eye development // inferred from electronic annotation /// 0043010 // camera-type eye development // not recorded /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0045595 // regulation of cell differentiation // inferred from mutant phenotype /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0048074 // negative regulation of eye pigmentation // inferred from electronic annotation /// 0048074 // negative regulation of eye pigmentation // not recorded /// 0048314 // embryo sac morphogenesis // inferred from electronic annotation /// 0048314 // embryo sac morphogenesis // not recorded /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded /// 0048557 // embryonic digestive tract morphogenesis // inferred from electronic annotation /// 0048557 // embryonic digestive tract morphogenesis // not recorded /// 0048596 // embryonic camera-type eye morphogenesis // inferred from electronic annotation /// 0048596 // embryonic camera-type eye morphogenesis // not recorded /// 0048666 // neuron development // inferred from electronic annotation /// 0048666 // neuron development // not recorded /// 0048745 // smooth muscle tissue development // inferred from electronic annotation /// 0048745 // smooth muscle tissue development // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0060135 // maternal process involved in female pregnancy // inferred from expression pattern /// 0060220 // camera-type eye photoreceptor cell fate commitment // inferred from electronic annotation /// 0060220 // camera-type eye photoreceptor cell fate commitment // not recorded /// 0090136 // epithelial cell-cell adhesion // inferred from electronic annotation /// 0090136 // epithelial cell-cell adhesion // not recorded 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0005102 // receptor binding // traceable author statement /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1393272_at AI044383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044383 /DB_XREF=gi:3291286 /DB_XREF=UI-R-C0-is-b-05-0-UI.s1 /CLONE=UI-R-C0-is-b-05-0-UI /FEA=EST /CNT=4 /TID=Rn.15905.1 /TIER=ConsEnd /STK=0 /UG=Rn.15905 /UG_TITLE=ESTs AI044383 1393273_at AW533027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533027 /DB_XREF=gi:7175441 /DB_XREF=UI-R-BU0-amy-h-12-0-UI.s1 /CLONE=UI-R-BU0-amy-h-12-0-UI /FEA=EST /CNT=4 /TID=Rn.25378.1 /TIER=ConsEnd /STK=0 /UG=Rn.25378 /UG_TITLE=ESTs AW533027 1393274_at AI059798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059798 /DB_XREF=gi:3333575 /DB_XREF=UI-R-C1-lh-f-05-0-UI.s1 /CLONE=UI-R-C1-lh-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.19279.1 /TIER=ConsEnd /STK=0 /UG=Rn.19279 /UG_TITLE=ESTs AI059798 similar to PRO1853 homolog RGD1311578 298748 NM_001008318 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1393275_at BM390444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390444 /DB_XREF=gi:18190497 /DB_XREF=UI-R-CN1-cjq-d-06-0-UI.s1 /CLONE=UI-R-CN1-cjq-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.41921.1 /TIER=ConsEnd /STK=0 /UG=Rn.41921 /UG_TITLE=ESTs BM390444 1393276_at BF418487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418487 /DB_XREF=gi:11406476 /DB_XREF=UI-R-BJ2-bqg-d-04-0-UI.s1 /CLONE=UI-R-BJ2-bqg-d-04-0-UI /FEA=EST /CNT=4 /TID=Rn.20884.2 /TIER=ConsEnd /STK=0 /UG=Rn.20884 /UG_TITLE=ESTs, Weakly similar to Yeast SOH1 protein like (Caenorhabditis elegans) (C.elegans) BF418487 mediator complex subunit 31 Med31 287475 NM_001135813 0006461 // protein complex assembly // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0016592 // mediator complex // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay 1393277_at AI579547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI579547 /DB_XREF=gi:4563923 /DB_XREF=UI-R-AA0-wr-h-07-0-UI.s1 /CLONE=UI-R-AA0-wr-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.38489.1 /TIER=ConsEnd /STK=0 /UG=Rn.38489 /UG_TITLE=ESTs AI579547 Nucleoporin 155 Nup155 117021 NM_053952 0006810 // transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005643 // nuclear pore // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0046930 // pore complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015288 // porin activity // inferred from electronic annotation /// 0017056 // structural constituent of nuclear pore // inferred from electronic annotation 1393278_at BM389370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389370 /DB_XREF=gi:18189423 /DB_XREF=UI-R-CN1-cjk-e-07-0-UI.s1 /CLONE=UI-R-CN1-cjk-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.19624.1 /TIER=ConsEnd /STK=0 /UG=Rn.19624 /UG_TITLE=ESTs BM389370 cAMP responsive element binding protein 3-like 4 Creb3l4 310616 NM_001007093 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1393279_at AI070869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070869 /DB_XREF=gi:3397120 /DB_XREF=UI-R-C2-ms-c-05-0-UI.s1 /CLONE=UI-R-C2-ms-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.19868.1 /TIER=ConsEnd /STK=0 /UG=Rn.19868 /UG_TITLE=ESTs AI070869 1393280_at AA874924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA874924 /DB_XREF=gi:4230806 /DB_XREF=UI-R-E0-ck-h-02-0-UI.s1 /CLONE=UI-R-E0-ck-h-02-0-UI /FEA=EST /CNT=4 /TID=Rn.3176.1 /TIER=ConsEnd /STK=0 /UG=Rn.3176 /UG_TITLE=ESTs AA874924 lymphocyte antigen 86 Ly86 291359 NM_001106128 0005515 // protein binding // not recorded 1393281_at AW915173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915173 /DB_XREF=gi:8080860 /DB_XREF=EST346477 /CLONE=RGICL82 /FEA=EST /CNT=3 /TID=Rn.21538.1 /TIER=ConsEnd /STK=0 /UG=Rn.21538 /UG_TITLE=ESTs, Highly similar to CAV1 MOUSE CAVEOLIN-1 (M.musculus) AW915173 caveolin 1, caveolae protein Cav1 25404 NM_031556 /// NM_133651 0000165 // MAPKKK cascade // not recorded /// 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000188 // inactivation of MAPK activity // inferred from electronic annotation /// 0000188 // inactivation of MAPK activity // not recorded /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0001937 // negative regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0001937 // negative regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001960 // negative regulation of cytokine-mediated signaling pathway // inferred from electronic annotation /// 0001960 // negative regulation of cytokine-mediated signaling pathway // not recorded /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from mutant phenotype /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006940 // regulation of smooth muscle contraction // inferred from electronic annotation /// 0006940 // regulation of smooth muscle contraction // not recorded /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0007595 // lactation // inferred from electronic annotation /// 0007595 // lactation // not recorded /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009267 // cellular response to starvation // inferred from electronic annotation /// 0009267 // cellular response to starvation // not recorded /// 0009612 // response to mechanical stimulus // inferred from mutant phenotype /// 0009967 // positive regulation of signal transduction // inferred from mutant phenotype /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0009968 // negative regulation of signal transduction // not recorded /// 0010332 // response to gamma radiation // inferred from expression pattern /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from electronic annotation /// 0010524 // positive regulation of calcium ion transport into cytosol // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0010952 // positive regulation of peptidase activity // not recorded /// 0016050 // vesicle organization // inferred from electronic annotation /// 0016050 // vesicle organization // not recorded /// 0019217 // regulation of fatty acid metabolic process // inferred from electronic annotation /// 0019217 // regulation of fatty acid metabolic process // not recorded /// 0019915 // lipid storage // inferred from electronic annotation /// 0019915 // lipid storage // not recorded /// 0030193 // regulation of blood coagulation // inferred from electronic annotation /// 0030193 // regulation of blood coagulation // not recorded /// 0030301 // cholesterol transport // traceable author statement /// 0030514 // negative regulation of BMP signaling pathway // inferred from electronic annotation /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0030857 // negative regulation of epithelial cell differentiation // inferred from electronic annotation /// 0030857 // negative regulation of epithelial cell differentiation // not recorded /// 0030879 // mammary gland development // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0031116 // positive regulation of microtubule polymerization // inferred from mutant phenotype /// 0031295 // T cell costimulation // not recorded /// 0031295 // T cell costimulation // inferred from sequence or structural similarity /// 0031295 // T cell costimulation // inferred from electronic annotation /// 0031623 // receptor internalization // not recorded /// 0032091 // negative regulation of protein binding // not recorded /// 0032507 // maintenance of protein location in cell // inferred from mutant phenotype /// 0032570 // response to progesterone stimulus // inferred from electronic annotation /// 0032570 // response to progesterone stimulus // not recorded /// 0033137 // negative regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033137 // negative regulation of peptidyl-serine phosphorylation // not recorded /// 0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// 0033138 // positive regulation of peptidyl-serine phosphorylation // not recorded /// 0033344 // cholesterol efflux // inferred from mutant phenotype /// 0033484 // nitric oxide homeostasis // inferred from electronic annotation /// 0033484 // nitric oxide homeostasis // not recorded /// 0042310 // vasoconstriction // not recorded /// 0042310 // vasoconstriction // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0042524 // negative regulation of tyrosine phosphorylation of Stat5 protein // inferred from electronic annotation /// 0042524 // negative regulation of tyrosine phosphorylation of Stat5 protein // not recorded /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0043407 // negative regulation of MAP kinase activity // not recorded /// 0043407 // negative regulation of MAP kinase activity // inferred from electronic annotation /// 0043409 // negative regulation of MAPKKK cascade // inferred from electronic annotation /// 0043409 // negative regulation of MAPKKK cascade // not recorded /// 0043627 // response to estrogen stimulus // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // not recorded /// 0045019 // negative regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045019 // negative regulation of nitric oxide biosynthetic process // not recorded /// 0045056 // transcytosis // traceable author statement /// 0045768 // positive regulation of anti-apoptosis // inferred from mutant phenotype /// 0045807 // positive regulation of endocytosis // inferred from mutant phenotype /// 0045907 // positive regulation of vasoconstriction // inferred from electronic annotation /// 0045907 // positive regulation of vasoconstriction // not recorded /// 0046426 // negative regulation of JAK-STAT cascade // inferred from electronic annotation /// 0046426 // negative regulation of JAK-STAT cascade // not recorded /// 0046785 // microtubule polymerization // inferred from mutant phenotype /// 0048554 // positive regulation of metalloenzyme activity // inferred from electronic annotation /// 0048554 // positive regulation of metalloenzyme activity // not recorded /// 0051259 // protein oligomerization // not recorded /// 0051259 // protein oligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051480 // cytosolic calcium ion homeostasis // inferred from electronic annotation /// 0051480 // cytosolic calcium ion homeostasis // not recorded /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded /// 0051899 // membrane depolarization // inferred from electronic annotation /// 0051899 // membrane depolarization // not recorded /// 0052547 // regulation of peptidase activity // inferred from electronic annotation /// 0052547 // regulation of peptidase activity // not recorded /// 0055074 // calcium ion homeostasis // not recorded /// 0055074 // calcium ion homeostasis // inferred from electronic annotation /// 0060056 // mammary gland involution // inferred from electronic annotation /// 0060056 // mammary gland involution // not recorded /// 0070836 // caveola assembly // inferred from electronic annotation /// 0070836 // caveola assembly // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // inferred from sequence or structural similarity /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded 0000139 // Golgi membrane // not recorded /// 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0000299 // integral to membrane of membrane fraction // inferred from electronic annotation /// 0000299 // integral to membrane of membrane fraction // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay /// 0005811 // lipid particle // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005901 // caveola // inferred from direct assay /// 0005901 // caveola // not recorded /// 0005901 // caveola // inferred from sequence or structural similarity /// 0005901 // caveola // traceable author statement /// 0005901 // caveola // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0009925 // basal plasma membrane // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016323 // basolateral plasma membrane // not recorded /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0031410 // cytoplasmic vesicle // inferred from direct assay /// 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded /// 0045121 // membrane raft // inferred from direct assay /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0000149 // SNARE binding // inferred from mutant phenotype /// 0005102 // receptor binding // not recorded /// 0005198 // structural molecule activity // not recorded /// 0005198 // structural molecule activity // inferred from sequence or structural similarity /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016504 // peptidase activator activity // inferred from electronic annotation /// 0016504 // peptidase activator activity // not recorded /// 0019900 // kinase binding // inferred from physical interaction /// 0019905 // syntaxin binding // inferred from mutant phenotype /// 0050998 // nitric-oxide synthase binding // inferred from physical interaction /// 0050998 // nitric-oxide synthase binding // not recorded /// 0050998 // nitric-oxide synthase binding // inferred from electronic annotation 1393282_at AA942816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA942816 /DB_XREF=gi:3102732 /DB_XREF=EST198315 /CLONE=RBRAB26 /FEA=EST /CNT=3 /TID=Rn.16999.2 /TIER=ConsEnd /STK=0 /UG=Rn.16999 /UG_TITLE=ESTs AA942816 spinster homolog 2 Spns2 100270678 NM_001144991 0055085 // transmembrane transport // inferred from electronic annotation 1393283_at AA924915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924915 /DB_XREF=gi:4236106 /DB_XREF=UI-R-A1-eg-c-05-0-UI.s1 /CLONE=UI-R-A1-eg-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.22970.1 /TIER=ConsEnd /STK=0 /UG=Rn.22970 /UG_TITLE=ESTs AA924915 ankyrin repeat domain 34B Ankrd34b 499506 NM_001109174 1393284_at BF567391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567391 /DB_XREF=gi:11677121 /DB_XREF=UI-R-BO0-ahd-f-07-0-UI.r1 /CLONE=UI-R-BO0-ahd-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.20325.1 /TIER=ConsEnd /STK=0 /UG=Rn.20325 /UG_TITLE=ESTs BF567391 1393285_at BF561264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561264 /DB_XREF=gi:11670994 /DB_XREF=UI-R-C0-hi-b-10-0-UI.r1 /CLONE=UI-R-C0-hi-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.42703.1 /TIER=ConsEnd /STK=0 /UG=Rn.42703 /UG_TITLE=ESTs BF561264 1393286_at AI453929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI453929 /DB_XREF=gi:4290163 /DB_XREF=UI-R-BT0-pu-h-05-0-UI.s1 /CLONE=UI-R-BT0-pu-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.6586.1 /TIER=ConsEnd /STK=0 /UG=Rn.6586 /UG_TITLE=ESTs AI453929 nuclear receptor subfamily 5, group A, member 1 Nr5a1 83826 NM_001191099 /// XM_001055033 /// XM_001072904 /// XM_002726146 /// XM_002729159 0001553 // luteinization // inferred from electronic annotation /// 0001553 // luteinization // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0008584 // male gonad development // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0008585 // female gonad development // inferred from expression pattern /// 0009888 // tissue development // inferred from electronic annotation /// 0009888 // tissue development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // not recorded /// 0030325 // adrenal gland development // inferred from electronic annotation /// 0030325 // adrenal gland development // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0051457 // maintenance of protein location in nucleus // inferred from electronic annotation /// 0051457 // maintenance of protein location in nucleus // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // non-traceable author statement /// 0005515 // protein binding // not recorded /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005543 // phospholipid binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393287_at AW915147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915147 /DB_XREF=gi:8080834 /DB_XREF=EST346451 /CLONE=RGICL10 /FEA=EST /CNT=3 /TID=Rn.49238.1 /TIER=ConsEnd /STK=0 /UG=Rn.49238 /UG_TITLE=ESTs AW915147 Moloney leukemia virus 10 Mov10 310756 NM_001107711 0035279 // mRNA cleavage involved in gene silencing by miRNA // not recorded 0000932 // cytoplasmic mRNA processing body // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1393288_at BF560790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF560790 /DB_XREF=gi:11670520 /DB_XREF=UI-R-C0-hi-d-09-0-UI.r3 /CLONE=UI-R-C0-hi-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.21214.1 /TIER=ConsEnd /STK=0 /UG=Rn.21214 /UG_TITLE=ESTs, Highly similar to RAS-RELATED PROTEIN RAB-5B (M.musculus) BF560790 RAB5B, member RAS oncogene family Rab5b 288779 NM_001079936 0007032 // endosome organization // not recorded /// 0007032 // endosome organization // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0030100 // regulation of endocytosis // not recorded /// 0030100 // regulation of endocytosis // inferred from electronic annotation 0005622 // intracellular // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0030139 // endocytic vesicle // not recorded /// 0030139 // endocytic vesicle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0030742 // GTP-dependent protein binding // not recorded /// 0030742 // GTP-dependent protein binding // inferred from electronic annotation 1393289_at AI072684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072684 /DB_XREF=gi:3398878 /DB_XREF=UI-R-C2-nk-e-11-0-UI.s1 /CLONE=UI-R-C2-nk-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.23693.1 /TIER=ConsEnd /STK=0 /UG=Rn.23693 /UG_TITLE=ESTs AI072684 1393290_at AW142022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142022 /DB_XREF=gi:6161881 /DB_XREF=EST292137 /CLONE=RGICT96 /FEA=EST /CNT=3 /TID=Rn.24855.3 /TIER=ConsEnd /STK=0 /UG=Rn.24855 /UG_TITLE=ESTs, Highly similar to MEFA MOUSE MYOCYTE-SPECIFIC ENHANCER FACTOR 2A (M.musculus) AW142022 myocyte enhancer factor 2a Mef2a 309957 NM_001014035 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1393291_at AW914913 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW914913 /DB_XREF=gi:8080595 /DB_XREF=EST346217 /CLONE=RGIBM24 /FEA=EST /CNT=3 /TID=Rn.21006.1 /TIER=ConsEnd /STK=0 /UG=Rn.21006 /UG_TITLE=ESTs AW914913 ubiquitin-conjugating enzyme E2Q family-like 1 Ube2ql1 679949 NM_001145163 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1393292_at BE114251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114251 /DB_XREF=gi:8506356 /DB_XREF=UI-R-BJ1-awk-a-08-0-UI.s1 /CLONE=UI-R-BJ1-awk-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.52341.1 /TIER=ConsEnd /STK=0 /UG=Rn.52341 /UG_TITLE=ESTs BE114251 zinc finger protein 592 Znf592 293038 NM_001106272 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1393293_at AI029628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029628 /DB_XREF=gi:4299867 /DB_XREF=UI-R-C0-iy-g-11-0-UI.s1 /CLONE=UI-R-C0-iy-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.18278.1 /TIER=ConsEnd /STK=0 /UG=Rn.18278 /UG_TITLE=ESTs AI029628 checkpoint with forkhead and ring finger domains Chfr 288734 NM_001009258 0000209 // protein polyubiquitination // not recorded /// 0000209 // protein polyubiquitination // inferred from sequence or structural similarity /// 0000209 // protein polyubiquitination // inferred from electronic annotation /// 0000278 // mitotic cell cycle // inferred from electronic annotation /// 0000278 // mitotic cell cycle // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0007093 // mitotic cell cycle checkpoint // not recorded /// 0007093 // mitotic cell cycle checkpoint // inferred from sequence or structural similarity /// 0016567 // protein ubiquitination // not recorded /// 0019941 // modification-dependent protein catabolic process // not recorded /// 0019941 // modification-dependent protein catabolic process // inferred from sequence or structural similarity /// 0019941 // modification-dependent protein catabolic process // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0016605 // PML body // not recorded /// 0016605 // PML body // inferred from sequence or structural similarity /// 0016605 // PML body // inferred from electronic annotation 0000166 // nucleotide binding // not recorded /// 0000166 // nucleotide binding // inferred from sequence or structural similarity /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393294_at BG671389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671389 /DB_XREF=gi:13893488 /DB_XREF=DRNBQD09 /CLONE=DRNBQD09 /FEA=EST /CNT=3 /TID=Rn.51125.1 /TIER=ConsEnd /STK=0 /UG=Rn.51125 /UG_TITLE=ESTs BG671389 1393295_at BF290301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290301 /DB_XREF=gi:11221371 /DB_XREF=EST454892 /CLONE=RGIHU77 /FEA=EST /CNT=3 /TID=Rn.11716.1 /TIER=ConsEnd /STK=0 /UG=Rn.11716 /UG_TITLE=ESTs BF290301 similar to RIKEN cDNA 2610019F03 LOC498662 498662 NM_001100791 1393296_at BG667806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667806 /DB_XREF=gi:13889728 /DB_XREF=DRABMD06 /CLONE=DRABMD06 /FEA=EST /CNT=3 /TID=Rn.40326.1 /TIER=ConsEnd /STK=0 /UG=Rn.40326 /UG_TITLE=ESTs BG667806 arginyltransferase 1 Ate1 293526 NM_001106300 0016598 // protein arginylation // inferred from electronic annotation /// 0016598 // protein arginylation // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0004057 // arginyltransferase activity // inferred from electronic annotation /// 0004057 // arginyltransferase activity // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1393297_at BG377979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377979 /DB_XREF=gi:13302451 /DB_XREF=UI-R-CU0-bvh-d-10-0-UI.s1 /CLONE=UI-R-CU0-bvh-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.15298.1 /TIER=ConsEnd /STK=0 /UG=Rn.15298 /UG_TITLE=ESTs BG377979 POU class 2 associating factor 1 Pou2af1 690528 NM_001109599 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded 1393298_at BF566249 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF566249 /DB_XREF=gi:11675979 /DB_XREF=UI-R-BT1-akb-e-05-0-UI.r1 /CLONE=UI-R-BT1-akb-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.27686.1 /TIER=ConsEnd /STK=0 /UG=Rn.27686 /UG_TITLE=ESTs BF566249 1393299_at BF567794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567794 /DB_XREF=gi:11677518 /DB_XREF=UI-R-BO0-ahl-g-09-0-UI.r1 /CLONE=UI-R-BO0-ahl-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.46260.1 /TIER=ConsEnd /STK=0 /UG=Rn.46260 /UG_TITLE=ESTs BF567794 1393300_at AA819340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819340 /DB_XREF=gi:4228478 /DB_XREF=UI-R-A0-bc-d-02-0-UI.s1 /CLONE=UI-R-A0-bc-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.40447.1 /TIER=ConsEnd /STK=0 /UG=Rn.40447 /UG_TITLE=ESTs AA819340 similar to hypothetical protein FLJ38663 RGD1563482 498179 NM_001109065 0006415 // translational termination // inferred from electronic annotation 0003747 // translation release factor activity // inferred from electronic annotation 1393301_at AI555172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555172 /DB_XREF=gi:4487535 /DB_XREF=UI-R-C2p-qt-f-05-0-UI.s1 /CLONE=UI-R-C2p-qt-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.24280.1 /TIER=ConsEnd /STK=0 /UG=Rn.24280 /UG_TITLE=ESTs AI555172 1393302_at BE098538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098538 /DB_XREF=gi:8490402 /DB_XREF=UI-R-BJ1-asx-b-01-0-UI.s1 /CLONE=UI-R-BJ1-asx-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.33681.1 /TIER=ConsEnd /STK=0 /UG=Rn.33681 /UG_TITLE=ESTs BE098538 1393303_at AW918896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918896 /DB_XREF=gi:8084683 /DB_XREF=EST350200 /CLONE=RGIFA07 /FEA=EST /CNT=3 /TID=Rn.21957.1 /TIER=ConsEnd /STK=0 /UG=Rn.21957 /UG_TITLE=ESTs AW918896 1393304_at BF386764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386764 /DB_XREF=gi:11371588 /DB_XREF=UI-R-CA1-bbh-b-10-0-UI.s1 /CLONE=UI-R-CA1-bbh-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.49301.1 /TIER=ConsEnd /STK=0 /UG=Rn.49301 /UG_TITLE=ESTs, Highly similar to VTL1_MOUSE Vesicle transport v-SNARE protein Vti1-like 1 (Vti1-rp1) (Vti1b) (M.musculus) BF386764 vesicle transport through interaction with t-SNAREs 1B-like LOC100359512 100359512 XR_086280 /// XR_086662 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031201 // SNARE complex // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation 1393305_at BF399398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399398 /DB_XREF=gi:11384402 /DB_XREF=UI-R-CA1-bjb-b-03-0-UI.s1 /CLONE=UI-R-CA1-bjb-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.55440.1 /TIER=ConsEnd /STK=0 /UG=Rn.55440 /UG_TITLE=ESTs, Weakly similar to T17453 ERG-associated protein ESET - mouse (M.musculus) BF399398 0016568 // chromatin modification // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation 1393306_at BF551475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551475 /DB_XREF=gi:11661199 /DB_XREF=UI-R-C0-ir-b-01-0-UI.r1 /CLONE=UI-R-C0-ir-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.18222.1 /TIER=ConsEnd /STK=0 /UG=Rn.18222 /UG_TITLE=ESTs BF551475 Cullin 5 Cul5 64624 NM_022683 0000209 // protein polyubiquitination // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006970 // response to osmotic stress // inferred from expression pattern /// 0051480 // cytosolic calcium ion homeostasis // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0031461 // cullin-RING ubiquitin ligase complex // inferred from electronic annotation /// 0031466 // Cul5-RING ubiquitin ligase complex // traceable author statement 0004842 // ubiquitin-protein ligase activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0005000 // vasopressin receptor activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation 1393307_at AI136599 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136599 /DB_XREF=gi:3637376 /DB_XREF=UI-R-C2p-ob-c-01-0-UI.s1 /CLONE=UI-R-C2p-ob-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.27183.1 /TIER=ConsEnd /STK=0 /UG=Rn.27183 /UG_TITLE=ESTs AI136599 1393308_at BE110640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110640 /DB_XREF=gi:8502745 /DB_XREF=UI-R-BJ1-avu-c-10-0-UI.s1 /CLONE=UI-R-BJ1-avu-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.25047.1 /TIER=ConsEnd /STK=0 /UG=Rn.25047 /UG_TITLE=ESTs BE110640 1393309_at AI145786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145786 /DB_XREF=gi:3667585 /DB_XREF=UI-R-BT0-qi-b-07-0-UI.s1 /CLONE=UI-R-BT0-qi-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.24097.1 /TIER=ConsEnd /STK=0 /UG=Rn.24097 /UG_TITLE=ESTs AI145786 zinc finger protein ZFP LOC503192 503192 XM_001077756 /// XM_578715 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1393310_at BG672309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672309 /DB_XREF=gi:13894408 /DB_XREF=DRNCFC09 /CLONE=DRNCFC09 /FEA=EST /CNT=3 /TID=Rn.12729.2 /TIER=ConsEnd /STK=0 /UG=Rn.12729 /UG_TITLE=ESTs BG672309 1393311_at AI044549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044549 /DB_XREF=gi:3291410 /DB_XREF=UI-R-C1-kc-h-09-0-UI.s1 /CLONE=UI-R-C1-kc-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.37974.1 /TIER=ConsEnd /STK=0 /UG=Rn.37974 /UG_TITLE=ESTs AI044549 1393312_at AA900283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900283 /DB_XREF=gi:4232774 /DB_XREF=UI-R-E0-dd-a-05-0-UI.s1 /CLONE=UI-R-E0-dd-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.32441.1 /TIER=ConsEnd /STK=0 /UG=Rn.32441 /UG_TITLE=ESTs AA900283 1393313_at BE106204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106204 /DB_XREF=gi:8498306 /DB_XREF=UI-R-BO1-asl-c-01-0-UI.s1 /CLONE=UI-R-BO1-asl-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.19309.1 /TIER=ConsEnd /STK=0 /UG=Rn.19309 /UG_TITLE=ESTs BE106204 1393314_at BI289840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289840 /DB_XREF=gi:14947831 /DB_XREF=UI-R-DK0-cfo-h-06-0-UI.s1 /CLONE=UI-R-DK0-cfo-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.41961.1 /TIER=ConsEnd /STK=0 /UG=Rn.41961 /UG_TITLE=ESTs BI289840 1393315_at AW142978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142978 /DB_XREF=gi:6162877 /DB_XREF=EST293270 /CLONE=RGIBA81 /FEA=EST /CNT=3 /TID=Rn.51269.1 /TIER=ConsEnd /STK=0 /UG=Rn.51269 /UG_TITLE=ESTs AW142978 TRAF3 interacting protein 3 Traf3ip3 360900 NM_001014132 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393316_at AI072658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072658 /DB_XREF=gi:3398852 /DB_XREF=UI-R-C2-nk-a-07-0-UI.s1 /CLONE=UI-R-C2-nk-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.54709.1 /TIER=ConsEnd /STK=0 /UG=Rn.54709 /UG_TITLE=ESTs AI072658 1393317_at BI303231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303231 /DB_XREF=gi:14979511 /DB_XREF=UI-R-DQ0-ciz-b-15-0-UI.s1 /CLONE=UI-R-DQ0-ciz-b-15-0-UI /FEA=EST /CNT=3 /TID=Rn.13080.1 /TIER=ConsEnd /STK=0 /UG=Rn.13080 /UG_TITLE=ESTs, Moderately similar to T17266 hypothetical protein DKFZp434F091.1 (H.sapiens) BI303231 THUMP domain containing 3 Thumpd3 500288 NM_001170546 /// NM_001170547 /// NM_001170548 /// XM_001078607 /// XM_575638 0005515 // protein binding // not recorded 1393318_at BG379074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379074 /DB_XREF=gi:13303546 /DB_XREF=UI-R-BT1-bnh-g-03-0-UI.s1 /CLONE=UI-R-BT1-bnh-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.63937.1 /TIER=ConsEnd /STK=0 /UG=Rn.63937 /UG_TITLE=ESTs BG379074 1393319_a_at AW142931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142931 /DB_XREF=gi:6162830 /DB_XREF=EST293222 /CLONE=RGIAZ70 /FEA=EST /CNT=3 /TID=Rn.24214.2 /TIER=ConsEnd /STK=0 /UG=Rn.24214 /UG_TITLE=ESTs, Moderately similar to RB17 MOUSE RAS-RELATED PROTEIN RAB-17 (M.musculus) AW142931 RAB17, member RAS oncogene family Rab17 503269 NM_001109363 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1393320_at BF396985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396985 /DB_XREF=gi:11381968 /DB_XREF=UI-R-BS2-beb-e-02-0-UI.s1 /CLONE=UI-R-BS2-beb-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.7959.1 /TIER=ConsEnd /STK=0 /UG=Rn.7959 /UG_TITLE=ESTs BF396985 1393321_at AW525577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525577 /DB_XREF=gi:7167962 /DB_XREF=UI-R-BJ0p-ain-c-04-0-UI.s1 /CLONE=UI-R-BJ0p-ain-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.15524.1 /TIER=ConsEnd /STK=0 /UG=Rn.15524 /UG_TITLE=ESTs AW525577 Kelch domain containing 1 Klhdc1 314190 NM_001108027 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation 1393322_at AI556910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556910 /DB_XREF=gi:4489273 /DB_XREF=UI-R-C2p-rp-d-07-0-UI.s1 /CLONE=UI-R-C2p-rp-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.39084.1 /TIER=ConsEnd /STK=0 /UG=Rn.39084 /UG_TITLE=ESTs, Weakly similar to FUS MOUSE RNA-BINDING PROTEIN FUS (M.musculus) AI556910 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor Taf15 287571 NM_001105824 0005622 // intracellular // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1393323_at BG375144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375144 /DB_XREF=gi:13299616 /DB_XREF=UI-R-CV1-bsx-f-06-0-UI.s1 /CLONE=UI-R-CV1-bsx-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.21476.1 /TIER=ConsEnd /STK=0 /UG=Rn.21476 /UG_TITLE=ESTs BG375144 U2 small nuclear RNA auxiliary factor 1-like 4 U2af1l4 361542 NM_001008775 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393324_at BF542552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542552 /DB_XREF=gi:11633659 /DB_XREF=UI-R-C3-sk-g-04-0-UI.r1 /CLONE=UI-R-C3-sk-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.25278.3 /TIER=ConsEnd /STK=0 /UG=Rn.25278 /UG_TITLE=ESTs BF542552 junctional adhesion molecule 2 Jam2 619374 NM_001034004 0005886 // plasma membrane // not recorded 1393325_at BG378917 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378917 /DB_XREF=gi:13303389 /DB_XREF=UI-R-CV1-bvu-e-03-0-UI.s1 /CLONE=UI-R-CV1-bvu-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.63877.1 /TIER=ConsEnd /STK=0 /UG=Rn.63877 /UG_TITLE=ESTs BG378917 GTP binding protein 6 (putative) Gtpbp6 363931 NM_001135840 0005622 // intracellular // inferred from electronic annotation 0005525 // GTP binding // inferred from electronic annotation 1393326_s_at BG378917 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378917 /DB_XREF=gi:13303389 /DB_XREF=UI-R-CV1-bvu-e-03-0-UI.s1 /CLONE=UI-R-CV1-bvu-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.63877.1 /TIER=ConsEnd /STK=0 /UG=Rn.63877 /UG_TITLE=ESTs BG378917 GTP binding protein 6 (putative) Gtpbp6 363931 NM_001135840 0005622 // intracellular // inferred from electronic annotation 0005525 // GTP binding // inferred from electronic annotation 1393327_at BG667328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667328 /DB_XREF=gi:13889250 /DB_XREF=DRABNE01 /CLONE=DRABNE01 /FEA=EST /CNT=3 /TID=Rn.21488.1 /TIER=ConsEnd /STK=0 /UG=Rn.21488 /UG_TITLE=ESTs BG667328 1393328_x_at BI288201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288201 /DB_XREF=gi:14944553 /DB_XREF=UI-R-DK0-ccy-a-12-0-UI.s1 /CLONE=UI-R-DK0-ccy-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.23958.2 /TIER=ConsEnd /STK=0 /UG=Rn.23958 /UG_TITLE=ESTs BI288201 1393329_at BE099038 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099038 /DB_XREF=gi:8490914 /DB_XREF=UI-R-BJ1-atf-f-05-0-UI.s1 /CLONE=UI-R-BJ1-atf-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.12322.1 /TIER=ConsEnd /STK=0 /UG=Rn.12322 /UG_TITLE=ESTs BE099038 1393330_at AI137898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137898 /DB_XREF=gi:3638675 /DB_XREF=UI-R-C0-hn-h-03-0-UI.s1 /CLONE=UI-R-C0-hn-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.27529.1 /TIER=ConsEnd /STK=0 /UG=Rn.27529 /UG_TITLE=ESTs AI137898 1393331_at AI575856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575856 /DB_XREF=gi:4560232 /DB_XREF=UI-R-Y0-uy-g-05-0-UI.s1 /CLONE=UI-R-Y0-uy-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.38656.1 /TIER=ConsEnd /STK=0 /UG=Rn.38656 /UG_TITLE=ESTs AI575856 headcase homolog (Drosophila) Heca 308624 NM_001107514 1393332_at BM390653 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390653 /DB_XREF=gi:18190706 /DB_XREF=UI-R-CN1-cjr-g-22-0-UI.s1 /CLONE=UI-R-CN1-cjr-g-22-0-UI /FEA=EST /CNT=3 /TID=Rn.66817.1 /TIER=ConsEnd /STK=0 /UG=Rn.66817 /UG_TITLE=ESTs BM390653 glucose-fructose oxidoreductase domain containing 2 Gfod2 307801 NM_001107421 0008152 // metabolic process // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded 0031012 // extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1393333_at BF561617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561617 /DB_XREF=gi:11671347 /DB_XREF=UI-R-C0-ie-f-04-0-UI.r1 /CLONE=UI-R-C0-ie-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.13294.1 /TIER=ConsEnd /STK=0 /UG=Rn.13294 /UG_TITLE=ESTs BF561617 1393334_at AW528448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528448 /DB_XREF=gi:7170862 /DB_XREF=UI-R-BO1-ajl-e-05-0-UI.s1 /CLONE=UI-R-BO1-ajl-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.17664.1 /TIER=ConsEnd /STK=0 /UG=Rn.17664 /UG_TITLE=ESTs AW528448 1393335_at BF418373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418373 /DB_XREF=gi:11406362 /DB_XREF=UI-R-BJ2-box-f-06-0-UI.s1 /CLONE=UI-R-BJ2-box-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.19864.1 /TIER=ConsEnd /STK=0 /UG=Rn.19864 /UG_TITLE=ESTs BF418373 EGF-like-domain, multiple 6 Egfl6 317470 NM_001108254 0010811 // positive regulation of cell-substrate adhesion // not recorded /// 0030198 // extracellular matrix organization // not recorded 0005604 // basement membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0005509 // calcium ion binding // inferred from electronic annotation 1393336_at BI274780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274780 /DB_XREF=gi:14886020 /DB_XREF=UI-R-CX0-bxd-h-12-0-UI.s1 /CLONE=UI-R-CX0-bxd-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.29290.1 /TIER=ConsEnd /STK=0 /UG=Rn.29290 /UG_TITLE=ESTs BI274780 SWAP switching B-cell complex 70 Swap70 293410 NM_001106288 0016444 // somatic cell DNA recombination // not recorded /// 0045190 // isotype switching // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // not recorded 1393337_at AW524476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524476 /DB_XREF=gi:7166861 /DB_XREF=UI-R-BO0-ahx-h-06-0-UI.s1 /CLONE=UI-R-BO0-ahx-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.43791.1 /TIER=ConsEnd /STK=0 /UG=Rn.43791 /UG_TITLE=ESTs AW524476 transcription factor CP2-like 1 Tcfcp2l1 304741 NM_001107170 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000902 // cell morphogenesis // not recorded /// 0002070 // epithelial cell maturation // not recorded /// 0007028 // cytoplasm organization // not recorded /// 0007431 // salivary gland development // not recorded /// 0008340 // determination of adult lifespan // not recorded /// 0045927 // positive regulation of growth // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0016020 // membrane // not recorded 0016565 // general transcriptional repressor activity // not recorded 1393338_at AW528719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528719 /DB_XREF=gi:7171133 /DB_XREF=UI-R-BO1-ajo-e-09-0-UI.s1 /CLONE=UI-R-BO1-ajo-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.14760.1 /TIER=ConsEnd /STK=0 /UG=Rn.14760 /UG_TITLE=ESTs AW528719 scleraxis Scx 680712 NM_001130508 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0030528 // transcription regulator activity // inferred from electronic annotation 1393339_at AW535172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535172 /DB_XREF=gi:7177586 /DB_XREF=UI-R-C4-alu-a-08-0-UI.s1 /CLONE=UI-R-C4-alu-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.23879.1 /TIER=ConsEnd /STK=0 /UG=Rn.23879 /UG_TITLE=ESTs AW535172 1393340_at AI070775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070775 /DB_XREF=gi:3397026 /DB_XREF=UI-R-C2-mr-a-12-0-UI.s1 /CLONE=UI-R-C2-mr-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.39672.1 /TIER=ConsEnd /STK=0 /UG=Rn.39672 /UG_TITLE=ESTs AI070775 MLX interacting protein Mlxip 304479 XM_001079320 /// XM_222162 0006913 // nucleocytoplasmic transport // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1393341_at AA955466 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955466 /DB_XREF=gi:4237820 /DB_XREF=UI-R-A1-ex-e-02-0-UI.s1 /CLONE=UI-R-A1-ex-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.7573.1 /TIER=ConsEnd /STK=0 /UG=Rn.7573 /UG_TITLE=ESTs AA955466 1393342_at BG380998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380998 /DB_XREF=gi:13305470 /DB_XREF=UI-R-CT0-bul-h-11-0-UI.s1 /CLONE=UI-R-CT0-bul-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.13286.1 /TIER=ConsEnd /STK=0 /UG=Rn.13286 /UG_TITLE=ESTs BG380998 1393343_at BE115856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115856 /DB_XREF=gi:8508001 /DB_XREF=UI-R-BS1-axx-b-07-0-UI.s1 /CLONE=UI-R-BS1-axx-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.20176.1 /TIER=ConsEnd /STK=0 /UG=Rn.20176 /UG_TITLE=ESTs BE115856 cullin 3 Cul3 301555 NM_001106923 0000090 // mitotic anaphase // not recorded /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0000910 // cytokinesis // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001831 // trophectodermal cellular morphogenesis // inferred from electronic annotation /// 0001831 // trophectodermal cellular morphogenesis // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007369 // gastrulation // inferred from electronic annotation /// 0007369 // gastrulation // not recorded /// 0008054 // cyclin catabolic process // inferred from electronic annotation /// 0008054 // cyclin catabolic process // not recorded /// 0016477 // cell migration // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0035024 // negative regulation of Rho protein signal transduction // not recorded /// 0043149 // stress fiber assembly // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051322 // anaphase // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005827 // polar microtubule // not recorded /// 0031461 // cullin-RING ubiquitin ligase complex // inferred from electronic annotation /// 0031463 // Cul3-RING ubiquitin ligase complex // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030332 // cyclin binding // inferred from electronic annotation /// 0030332 // cyclin binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation 1393344_at AW528051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528051 /DB_XREF=gi:7170465 /DB_XREF=UI-R-BT1-akh-b-04-0-UI.s1 /CLONE=UI-R-BT1-akh-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.7618.1 /TIER=ConsEnd /STK=0 /UG=Rn.7618 /UG_TITLE=ESTs AW528051 1393345_at BF561145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561145 /DB_XREF=gi:11670875 /DB_XREF=UI-R-E1-gp-e-01-0-UI.r1 /CLONE=UI-R-E1-gp-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.64084.1 /TIER=ConsEnd /STK=0 /UG=Rn.64084 /UG_TITLE=ESTs BF561145 1393346_at BI279863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279863 /DB_XREF=gi:14928086 /DB_XREF=UI-R-CU0s-cbr-g-12-0-UI.s1 /CLONE=UI-R-CU0s-cbr-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.21916.1 /TIER=ConsEnd /STK=0 /UG=Rn.21916 /UG_TITLE=ESTs BI279863 coiled-coil domain containing 125 Ccdc125 499518 NM_001134761 1393347_at BI289767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289767 /DB_XREF=gi:14947684 /DB_XREF=UI-R-DK0-cfo-a-02-0-UI.s1 /CLONE=UI-R-DK0-cfo-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.16919.1 /TIER=ConsEnd /STK=0 /UG=Rn.16919 /UG_TITLE=ESTs BI289767 integrin, alpha L Itgal 308995 NM_001033998 0002291 // T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell // not recorded /// 0002291 // T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007157 // heterophilic cell-cell adhesion // not recorded /// 0007157 // heterophilic cell-cell adhesion // inferred from electronic annotation /// 0007159 // leukocyte cell-cell adhesion // not recorded /// 0007159 // leukocyte cell-cell adhesion // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0016337 // cell-cell adhesion // inferred from mutant phenotype /// 0022407 // regulation of cell-cell adhesion // not recorded /// 0022409 // positive regulation of cell-cell adhesion // not recorded /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0050798 // activated T cell proliferation // not recorded /// 0050850 // positive regulation of calcium-mediated signaling // not recorded 0001772 // immunological synapse // not recorded /// 0005886 // plasma membrane // not recorded /// 0008305 // integrin complex // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0050839 // cell adhesion molecule binding // not recorded /// 0050839 // cell adhesion molecule binding // inferred from electronic annotation 1393348_at AI007775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI007775 /DB_XREF=gi:3221607 /DB_XREF=EST202226 /CLONE=RBRAU48 /FEA=EST /CNT=3 /TID=Rn.23340.1 /TIER=ConsEnd /STK=0 /UG=Rn.23340 /UG_TITLE=ESTs AI007775 1393349_x_at BI288992 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288992 /DB_XREF=gi:14946108 /DB_XREF=UI-R-DK0-cdh-c-01-0-UI.s1 /CLONE=UI-R-DK0-cdh-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.54611.2 /TIER=ConsEnd /STK=0 /UG=Rn.54611 /UG_TITLE=ESTs BI288992 vav 2 guanine nucleotide exchange factor Vav2 296603 NM_001106563 0006915 // apoptosis // not recorded /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0016477 // cell migration // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030031 // cell projection assembly // not recorded /// 0030032 // lamellipodium assembly // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0043552 // positive regulation of phosphoinositide 3-kinase activity // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005154 // epidermal growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1393350_at BI284396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284396 /DB_XREF=gi:14937034 /DB_XREF=UI-R-CX0s-cco-f-06-0-UI.s1 /CLONE=UI-R-CX0s-cco-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.12804.1 /TIER=ConsEnd /STK=0 /UG=Rn.12804 /UG_TITLE=ESTs BI284396 1393351_at BE109501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109501 /DB_XREF=gi:8501569 /DB_XREF=UI-R-BJ1-aut-d-12-0-UI.s1 /CLONE=UI-R-BJ1-aut-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.16968.1 /TIER=ConsEnd /STK=0 /UG=Rn.16968 /UG_TITLE=ESTs BE109501 Retinol dehydrogenase 10 (all-trans) Rdh10 353252 NM_181478 0001656 // metanephros development // inferred from electronic annotation /// 0001656 // metanephros development // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0002138 // retinoic acid biosynthetic process // inferred from electronic annotation /// 0002138 // retinoic acid biosynthetic process // not recorded /// 0007601 // visual perception // inferred from electronic annotation /// 0007601 // visual perception // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008406 // gonad development // inferred from electronic annotation /// 0008406 // gonad development // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0014032 // neural crest cell development // inferred from electronic annotation /// 0014032 // neural crest cell development // not recorded /// 0031076 // embryonic camera-type eye development // inferred from electronic annotation /// 0031076 // embryonic camera-type eye development // not recorded /// 0035115 // embryonic forelimb morphogenesis // inferred from electronic annotation /// 0035115 // embryonic forelimb morphogenesis // not recorded /// 0042572 // retinol metabolic process // inferred from electronic annotation /// 0042572 // retinol metabolic process // not recorded /// 0042574 // retinal metabolic process // inferred from electronic annotation /// 0042574 // retinal metabolic process // not recorded /// 0043583 // ear development // inferred from electronic annotation /// 0043583 // ear development // not recorded /// 0043584 // nose development // inferred from electronic annotation /// 0043584 // nose development // not recorded /// 0048568 // embryonic organ development // not recorded /// 0048568 // embryonic organ development // inferred from electronic annotation /// 0048703 // embryonic viscerocranium morphogenesis // inferred from electronic annotation /// 0048703 // embryonic viscerocranium morphogenesis // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060431 // primary lung bud formation // inferred from electronic annotation /// 0060431 // primary lung bud formation // not recorded /// 0060449 // bud elongation involved in lung branching // inferred from electronic annotation /// 0060449 // bud elongation involved in lung branching // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004745 // retinol dehydrogenase activity // inferred from electronic annotation /// 0004745 // retinol dehydrogenase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1393352_at BI293882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293882 /DB_XREF=gi:14955803 /DB_XREF=UI-R-DK0-cdw-b-04-0-UI.s1 /CLONE=UI-R-DK0-cdw-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.23973.1 /TIER=ConsEnd /STK=0 /UG=Rn.23973 /UG_TITLE=ESTs, Weakly similar to T02247 hypothetical protein P1.11659_5 (H.sapiens) BI293882 similar to hypothetical protein MGC38960 RGD1310552 300836 NM_001106838 1393353_at AI044301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044301 /DB_XREF=gi:3291204 /DB_XREF=UI-R-C1-jx-b-01-0-UI.s1 /CLONE=UI-R-C1-jx-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.15868.1 /TIER=ConsEnd /STK=0 /UG=Rn.15868 /UG_TITLE=ESTs AI044301 similar to 6430573F11Rik protein RGD1304810 306504 NM_001107314 0008152 // metabolic process // inferred from electronic annotation 0008168 // methyltransferase activity // inferred from electronic annotation 1393354_at BE097947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097947 /DB_XREF=gi:8488926 /DB_XREF=UI-R-C4-amc-e-10-0-UI.s1 /CLONE=UI-R-C4-amc-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.19111.1 /TIER=ConsEnd /STK=0 /UG=Rn.19111 /UG_TITLE=ESTs BE097947 1393355_at AI111659 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111659 /DB_XREF=gi:3511608 /DB_XREF=UI-R-Y0-mk-d-09-0-UI.s1 /CLONE=UI-R-Y0-mk-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.23553.1 /TIER=ConsEnd /STK=0 /UG=Rn.23553 /UG_TITLE=ESTs AI111659 1393356_at AA818098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818098 /DB_XREF=gi:4198614 /DB_XREF=UI-R-A0-am-e-09-0-UI.s1 /CLONE=UI-R-A0-am-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.23945.1 /TIER=ConsEnd /STK=0 /UG=Rn.23945 /UG_TITLE=ESTs AA818098 1393357_at AW253109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253109 /DB_XREF=gi:6596700 /DB_XREF=UI-R-BJ0-aeg-f-03-0-UI.s1 /CLONE=UI-R-BJ0-aeg-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.40985.1 /TIER=ConsEnd /STK=0 /UG=Rn.40985 /UG_TITLE=ESTs, Highly similar to T17316 hypothetical protein DKFZp434L108.1 (H.sapiens) AW253109 GLE1 RNA export mediator homolog (yeast) Gle1 362098 NM_001025731 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016973 // poly(A)+ mRNA export from nucleus // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded 1393358_at AA957379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957379 /DB_XREF=gi:4277269 /DB_XREF=UI-R-E1-fu-a-06-0-UI.s1 /CLONE=UI-R-E1-fu-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.7786.2 /TIER=ConsEnd /STK=0 /UG=Rn.7786 /UG_TITLE=ESTs AA957379 1393359_at AW534487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534487 /DB_XREF=gi:7176901 /DB_XREF=UI-R-BS0-ans-b-07-0-UI.s1 /CLONE=UI-R-BS0-ans-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.15686.1 /TIER=ConsEnd /STK=0 /UG=Rn.15686 /UG_TITLE=ESTs, Weakly similar to T18295 Ap-3 adaptor complex beta3A chain - mouse (M.musculus) AW534487 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0044431 // Golgi apparatus part // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 1393360_at BE105636 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105636 /DB_XREF=gi:8497738 /DB_XREF=UI-R-BX0-arx-c-02-0-UI.s1 /CLONE=UI-R-BX0-arx-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.15162.1 /TIER=ConsEnd /STK=0 /UG=Rn.15162 /UG_TITLE=ESTs BE105636 zinc finger protein 426-like Zfp426l 367034 NM_001135018 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393361_at H34199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H34199 /DB_XREF=gi:979616 /DB_XREF=EST110878 /CLONE=RPNBO03 /FEA=EST /CNT=3 /TID=Rn.72518.1 /TIER=ConsEnd /STK=0 /UG=Rn.72518 /UG_TITLE=ESTs H34199 small nuclear ribonucleoprotein 25 (U11/U12) Snrnp25 287170 XM_001062061 /// XM_213260 0005634 // nucleus // not recorded /// 0005689 // U12-type spliceosomal complex // not recorded 1393362_at AI554982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI554982 /DB_XREF=gi:4487345 /DB_XREF=UI-R-C2p-qu-c-01-0-UI.s1 /CLONE=UI-R-C2p-qu-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.21080.1 /TIER=ConsEnd /STK=0 /UG=Rn.21080 /UG_TITLE=ESTs AI554982 1393363_at AI111670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111670 /DB_XREF=gi:3511619 /DB_XREF=UI-R-Y0-mk-f-08-0-UI.s1 /CLONE=UI-R-Y0-mk-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.23555.1 /TIER=ConsEnd /STK=0 /UG=Rn.23555 /UG_TITLE=ESTs, Highly similar to T45119 FIM protein (H.sapiens) AI111670 zinc finger, MYM-type 2 Zmym2 305913 XM_001060431 /// XM_224241 0016605 // PML body // not recorded 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0031624 // ubiquitin conjugating enzyme binding // not recorded 1393364_at BM385460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385460 /DB_XREF=gi:18185513 /DB_XREF=UI-R-CN1-clv-n-16-0-UI.s1 /CLONE=UI-R-CN1-clv-n-16-0-UI /FEA=EST /CNT=3 /TID=Rn.15381.1 /TIER=ConsEnd /STK=0 /UG=Rn.15381 /UG_TITLE=ESTs BM385460 solute carrier family 12 (potassium/chloride transporters), member 8 Slc12a8 266733 NM_153625 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0015293 // symporter activity // inferred from electronic annotation 1393365_at AW433625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433625 /DB_XREF=gi:6964932 /DB_XREF=UI-R-BJ0p-afk-c-08-0-UI.s1 /CLONE=UI-R-BJ0p-afk-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.65102.1 /TIER=ConsEnd /STK=0 /UG=Rn.65102 /UG_TITLE=ESTs AW433625 chromodomain helicase DNA binding protein 1 Chd1 308215 NM_001107465 0006333 // chromatin assembly or disassembly // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1393366_at BF521857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF521857 /DB_XREF=gi:11629824 /DB_XREF=UI-R-C2p-nq-h-02-0-UI.r1 /CLONE=UI-R-C2p-nq-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.27165.1 /TIER=ConsEnd /STK=0 /UG=Rn.27165 /UG_TITLE=ESTs, Highly similar to MAN1_HUMAN INNER NUCLEAR MEMBRANE PROTEIN MAN1 (H.sapiens) BF521857 LEM domain containing 3 Lemd3 680066 NM_001191000 /// XM_001055542 /// XM_002726900 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0032926 // negative regulation of activin receptor signaling pathway // not recorded 0005635 // nuclear envelope // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005637 // nuclear inner membrane // not recorded /// 0005639 // integral to nuclear inner membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393367_at AW520745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520745 /DB_XREF=gi:7163123 /DB_XREF=UI-R-BJ0p-agh-a-07-0-UI.s1 /CLONE=UI-R-BJ0p-agh-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.45061.1 /TIER=ConsEnd /STK=0 /UG=Rn.45061 /UG_TITLE=ESTs, Weakly similar to AF125807 1 DNA 5-kinase3-phosphatase (H.sapiens) AW520745 polynucleotide kinase 3'-phosphatase Pnkp 308576 NM_001004259 0006281 // DNA repair // inferred from electronic annotation /// 0006281 // DNA repair // not recorded /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // not recorded /// 0042769 // DNA damage response, detection of DNA damage // inferred from electronic annotation /// 0042769 // DNA damage response, detection of DNA damage // not recorded /// 0046939 // nucleotide phosphorylation // not recorded /// 0046939 // nucleotide phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0019201 // nucleotide kinase activity // inferred from electronic annotation /// 0019201 // nucleotide kinase activity // not recorded /// 0046403 // polynucleotide 3'-phosphatase activity // inferred from electronic annotation /// 0046403 // polynucleotide 3'-phosphatase activity // not recorded /// 0046404 // ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity // inferred from electronic annotation /// 0046404 // ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity // not recorded 1393368_at BG372522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372522 /DB_XREF=gi:13269059 /DB_XREF=UI-R-CV1-brv-b-09-0-UI.s1 /CLONE=UI-R-CV1-brv-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.19652.1 /TIER=ConsEnd /STK=0 /UG=Rn.19652 /UG_TITLE=ESTs BG372522 oxysterol binding protein-like 5 Osbpl5 361686 NM_001015024 0008202 // steroid metabolic process // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393369_at BI300502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300502 /DB_XREF=gi:14976782 /DB_XREF=UI-R-CV2-cif-f-12-0-UI.s1 /CLONE=UI-R-CV2-cif-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.66255.1 /TIER=ConsEnd /STK=0 /UG=Rn.66255 /UG_TITLE=ESTs BI300502 1393370_at BG380685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380685 /DB_XREF=gi:13305157 /DB_XREF=UI-R-CT0-bua-c-05-0-UI.s1 /CLONE=UI-R-CT0-bua-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.20211.1 /TIER=ConsEnd /STK=0 /UG=Rn.20211 /UG_TITLE=ESTs BG380685 doublecortin-like kinase 2 Dclk2 310698 NM_001009691 /// NM_001195832 0006468 // protein phosphorylation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1393371_at BG378781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378781 /DB_XREF=gi:13303253 /DB_XREF=UI-R-CV1-bvs-g-06-0-UI.s1 /CLONE=UI-R-CV1-bvs-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.66603.1 /TIER=ConsEnd /STK=0 /UG=Rn.66603 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) BG378781 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1393372_at BG375691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375691 /DB_XREF=gi:13300163 /DB_XREF=UI-R-CS0-bte-c-05-0-UI.s1 /CLONE=UI-R-CS0-bte-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.18146.1 /TIER=ConsEnd /STK=0 /UG=Rn.18146 /UG_TITLE=ESTs, Highly similar to MTF1 MOUSE TRANSCRIPTION FACTOR MTF-1 (M.musculus) BG375691 metal-regulatory transcription factor 1 Mtf1 362591 NM_001108677 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006979 // response to oxidative stress // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046686 // response to cadmium ion // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042156 // zinc-mediated transcriptional activator activity // not recorded 1393373_at BI289640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289640 /DB_XREF=gi:14947416 /DB_XREF=UI-R-DK0-cfi-d-03-0-UI.s1 /CLONE=UI-R-DK0-cfi-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.27276.1 /TIER=ConsEnd /STK=0 /UG=Rn.27276 /UG_TITLE=ESTs BI289640 opsin 3 Opn3 498289 NM_001191933 /// XM_002724909 /// XM_573517 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007601 // visual perception // inferred from electronic annotation /// 0018298 // protein-chromophore linkage // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0009881 // photoreceptor activity // inferred from electronic annotation 1393374_at BM389110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389110 /DB_XREF=gi:18189163 /DB_XREF=UI-R-DZ0-cko-c-07-0-UI.s1 /CLONE=UI-R-DZ0-cko-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.47916.2 /TIER=ConsEnd /STK=0 /UG=Rn.47916 /UG_TITLE=ESTs BM389110 1393375_at BI274778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274778 /DB_XREF=gi:14886016 /DB_XREF=UI-R-CX0-bxd-h-10-0-UI.s1 /CLONE=UI-R-CX0-bxd-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.66103.1 /TIER=ConsEnd /STK=0 /UG=Rn.66103 /UG_TITLE=ESTs, Weakly similar to C3X1 RAT CX3C CHEMOKINE RECEPTOR 1 (R.norvegicus) BI274778 1393376_at BI289559 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289559 /DB_XREF=gi:14947254 /DB_XREF=UI-R-DK0-cff-e-02-0-UI.s1 /CLONE=UI-R-DK0-cff-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.80100.1 /TIER=ConsEnd /STK=0 /UG=Rn.80100 /UG_TITLE=ESTs, Weakly similar to Sry protein (R.norvegicus) BI289559 SRY (sex determining region Y)-box 6 Sox6 293165 NM_001024751 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000902 // cell morphogenesis // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0009791 // post-embryonic development // not recorded /// 0016458 // gene silencing // not recorded /// 0021778 // oligodendrocyte cell fate specification // not recorded /// 0030097 // hemopoiesis // not recorded /// 0035051 // cardiac cell differentiation // not recorded /// 0042692 // muscle cell differentiation // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048708 // astrocyte differentiation // inferred from mutant phenotype /// 0048709 // oligodendrocyte differentiation // not recorded /// 0048821 // erythrocyte development // not recorded /// 0051216 // cartilage development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1393377_at BE103036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103036 /DB_XREF=gi:8495135 /DB_XREF=UI-R-BT1-aqr-f-05-0-UI.s1 /CLONE=UI-R-BT1-aqr-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.40322.2 /TIER=ConsEnd /STK=0 /UG=Rn.40322 /UG_TITLE=ESTs, Weakly similar to LIS1 MOUSE PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB ALPHA SUBUNIT (R.norvegicus) BE103036 rCG49027-like LOC100362836 100362836 XM_002726882 /// XM_002729781 1393378_at BM388654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388654 /DB_XREF=gi:18188707 /DB_XREF=UI-R-DZ0-ckm-n-05-0-UI.s1 /CLONE=UI-R-DZ0-ckm-n-05-0-UI /FEA=EST /CNT=3 /TID=Rn.28830.1 /TIER=ConsEnd /STK=0 /UG=Rn.28830 /UG_TITLE=ESTs BM388654 1393379_a_at AI385291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385291 /DB_XREF=gi:4198073 /DB_XREF=UI-R-C2-mw-d-02-0-UI.s2 /CLONE=UI-R-C2-mw-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.20030.1 /TIER=ConsEnd /STK=0 /UG=Rn.20030 /UG_TITLE=ESTs AI385291 B lymphoid tyrosine kinase Blk 364403 NM_001025751 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1393380_at AW917818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917818 /DB_XREF=gi:8083578 /DB_XREF=EST349122 /CLONE=RGIEJ18 /FEA=EST /CNT=3 /TID=Rn.23599.2 /TIER=ConsEnd /STK=0 /UG=Rn.23599 /UG_TITLE=ESTs AW917818 1393381_at AA924139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924139 /DB_XREF=gi:4234231 /DB_XREF=UI-R-A1-dt-d-01-0-UI.s1 /CLONE=UI-R-A1-dt-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.8245.2 /TIER=ConsEnd /STK=0 /UG=Rn.8245 /UG_TITLE=ESTs AA924139 1393382_at BE096740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096740 /DB_XREF=gi:8487671 /DB_XREF=UI-R-BU0-apm-b-11-0-UI.s1 /CLONE=UI-R-BU0-apm-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.47432.1 /TIER=ConsEnd /STK=0 /UG=Rn.47432 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) BE096740 similar to Hypothetical protein A430033K04 RGD1566386 304336 NM_001107127 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393383_at AW521125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521125 /DB_XREF=gi:7163503 /DB_XREF=UI-R-BO0-agp-e-05-0-UI.s1 /CLONE=UI-R-BO0-agp-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.45711.1 /TIER=ConsEnd /STK=0 /UG=Rn.45711 /UG_TITLE=ESTs, Moderately similar to GDIT MOUSE RHO GDP-DISSOCIATION INHIBITOR 3 (M.musculus) AW521125 Rho GDP dissociation inhibitor (GDI) gamma Arhgdig 360500 NM_001108269 0032880 // regulation of protein localization // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0005083 // small GTPase regulator activity // not recorded /// 0005092 // GDP-dissociation inhibitor activity // not recorded /// 0005094 // Rho GDP-dissociation inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393384_at BF393809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393809 /DB_XREF=gi:11378672 /DB_XREF=UI-R-CA0-bgv-b-10-0-UI.s1 /CLONE=UI-R-CA0-bgv-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.57819.1 /TIER=ConsEnd /STK=0 /UG=Rn.57819 /UG_TITLE=ESTs BF393809 hypothetical protein LOC682006 LOC682006 682006 XM_001059330 1393385_at AI060208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060208 /DB_XREF=gi:3333985 /DB_XREF=UI-R-C1-lm-c-02-0-UI.s1 /CLONE=UI-R-C1-lm-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.19392.1 /TIER=ConsEnd /STK=0 /UG=Rn.19392 /UG_TITLE=ESTs AI060208 RGD1560273 RGD1560273 498405 XM_001068602 /// XM_579821 1393386_at BF284080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284080 /DB_XREF=gi:11215150 /DB_XREF=EST448671 /CLONE=RGIEK69 /FEA=EST /CNT=3 /TID=Rn.23162.2 /TIER=ConsEnd /STK=0 /UG=Rn.23162 /UG_TITLE=ESTs BF284080 family with sequence similarity 183, member B Fam183b 287346 XM_002724609 /// XM_002727713 /// XM_213312 1393387_at BF411859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411859 /DB_XREF=gi:11399848 /DB_XREF=UI-R-BT1-bmr-b-08-0-UI.s1 /CLONE=UI-R-BT1-bmr-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.41508.1 /TIER=ConsEnd /STK=0 /UG=Rn.41508 /UG_TITLE=ESTs, Moderately similar to A46498 glucocorticoid-sensitive T cell-specific protein 30 - mouse (M.musculus) BF411859 1393388_at BM387780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387780 /DB_XREF=gi:18187833 /DB_XREF=UI-R-CN1-cjk-g-02-0-UI.s1 /CLONE=UI-R-CN1-cjk-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.48055.1 /TIER=ConsEnd /STK=0 /UG=Rn.48055 /UG_TITLE=ESTs BM387780 Zinc finger, DHHC-type containing 3 Zdhhc3 301081 NM_001039014 0006605 // protein targeting // inferred from electronic annotation /// 0006605 // protein targeting // not recorded /// 0018345 // protein palmitoylation // inferred from electronic annotation /// 0018345 // protein palmitoylation // not recorded 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0008270 // zinc ion binding // inferred from electronic annotation /// 0016409 // palmitoyltransferase activity // inferred from electronic annotation /// 0016409 // palmitoyltransferase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1393389_at BF396237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396237 /DB_XREF=gi:11381209 /DB_XREF=UI-R-BS2-bdv-h-03-0-UI.s1 /CLONE=UI-R-BS2-bdv-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.63864.1 /TIER=ConsEnd /STK=0 /UG=Rn.63864 /UG_TITLE=ESTs BF396237 nuclear receptor subfamily 4, group A, member 3 Nr4a3 58853 NM_017352 /// NM_031628 0001707 // mesoderm formation // inferred from electronic annotation /// 0001707 // mesoderm formation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0030534 // adult behavior // inferred from electronic annotation /// 0030534 // adult behavior // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0042472 // inner ear morphogenesis // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048752 // semicircular canal morphogenesis // inferred from electronic annotation /// 0048752 // semicircular canal morphogenesis // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0060005 // vestibular reflex // inferred from electronic annotation /// 0060005 // vestibular reflex // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1393390_at AW528708 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528708 /DB_XREF=gi:7171122 /DB_XREF=UI-R-BO1-ajo-d-10-0-UI.s1 /CLONE=UI-R-BO1-ajo-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.33510.1 /TIER=ConsEnd /STK=0 /UG=Rn.33510 /UG_TITLE=ESTs AW528708 Src homology 2 domain-containing transforming protein D Shd 316507 NM_001108223 0005515 // protein binding // inferred from electronic annotation 1393391_at BF406888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406888 /DB_XREF=gi:11394863 /DB_XREF=UI-R-BJ2-bps-c-07-0-UI.s1 /CLONE=UI-R-BJ2-bps-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.48378.1 /TIER=ConsEnd /STK=0 /UG=Rn.48378 /UG_TITLE=ESTs BF406888 trimethylguanosine synthase homolog (S. cerevisiae) Tgs1 312947 NM_001107904 0001510 // RNA methylation // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0009452 // RNA capping // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0071164 // RNA trimethylguanosine synthase activity // inferred from electronic annotation 1393392_at BE120352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120352 /DB_XREF=gi:8512457 /DB_XREF=UI-R-CA0-baq-d-09-0-UI.s1 /CLONE=UI-R-CA0-baq-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.51610.1 /TIER=ConsEnd /STK=0 /UG=Rn.51610 /UG_TITLE=ESTs BE120352 1393394_at AI071827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071827 /DB_XREF=gi:3398042 /DB_XREF=UI-R-C2-nh-c-07-0-UI.s1 /CLONE=UI-R-C2-nh-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.20649.1 /TIER=ConsEnd /STK=0 /UG=Rn.20649 /UG_TITLE=ESTs AI071827 1393395_at BE120797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120797 /DB_XREF=gi:8512866 /DB_XREF=UI-R-BS1-azs-c-05-0-UI.s1 /CLONE=UI-R-BS1-azs-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.35021.1 /TIER=ConsEnd /STK=0 /UG=Rn.35021 /UG_TITLE=ESTs BE120797 zinc finger, MYM-type 4 Zmym4 313598 NM_001107982 0008270 // zinc ion binding // inferred from electronic annotation 1393396_at AA964966 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964966 /DB_XREF=gi:4279840 /DB_XREF=UI-R-C0-hb-c-06-0-UI.s1 /CLONE=UI-R-C0-hb-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.12145.1 /TIER=ConsEnd /STK=0 /UG=Rn.12145 /UG_TITLE=ESTs AA964966 SFT2 domain containing 3 Sft2d3 364835 NM_001108887 0016192 // vesicle-mediated transport // inferred from electronic annotation 1393397_at AI576488 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576488 /DB_XREF=gi:4560864 /DB_XREF=UI-R-G0-us-g-05-0-UI.s1 /CLONE=UI-R-G0-us-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.17687.1 /TIER=ConsEnd /STK=0 /UG=Rn.17687 /UG_TITLE=ESTs, Highly similar to CARBOXYPEPTIDASE A2 PRECURSOR (R.norvegicus) AI576488 carboxypeptidase A2 (pancreatic) Cpa2 296959 NM_001013083 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393398_at BF412064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412064 /DB_XREF=gi:11400053 /DB_XREF=UI-R-BT1-bmy-b-09-0-UI.s1 /CLONE=UI-R-BT1-bmy-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.52113.1 /TIER=ConsEnd /STK=0 /UG=Rn.52113 /UG_TITLE=ESTs BF412064 1393399_at BI275563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275563 /DB_XREF=gi:14919597 /DB_XREF=UI-R-CX0-bwy-g-11-0-UI.s1 /CLONE=UI-R-CX0-bwy-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.21563.1 /TIER=ConsEnd /STK=0 /UG=Rn.21563 /UG_TITLE=ESTs BI275563 1393400_at BM387946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387946 /DB_XREF=gi:18187999 /DB_XREF=UI-R-CN1-cjk-h-16-0-UI.s1 /CLONE=UI-R-CN1-cjk-h-16-0-UI /FEA=EST /CNT=3 /TID=Rn.17862.1 /TIER=ConsEnd /STK=0 /UG=Rn.17862 /UG_TITLE=ESTs, Weakly similar to B56707 protein-tyrosine kinase (R.norvegicus) BM387946 zeta-chain (TCR) associated protein kinase Zap70 301348 NM_001012002 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0006955 // immune response // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // not recorded /// 0043366 // beta selection // inferred from electronic annotation /// 0043366 // beta selection // not recorded /// 0045059 // positive thymic T cell selection // inferred from electronic annotation /// 0045059 // positive thymic T cell selection // not recorded /// 0045060 // negative thymic T cell selection // inferred from electronic annotation /// 0045060 // negative thymic T cell selection // not recorded /// 0045061 // thymic T cell selection // not recorded /// 0045061 // thymic T cell selection // inferred from electronic annotation /// 0045582 // positive regulation of T cell differentiation // not recorded /// 0045582 // positive regulation of T cell differentiation // inferred from electronic annotation /// 0046638 // positive regulation of alpha-beta T cell differentiation // inferred from electronic annotation /// 0046638 // positive regulation of alpha-beta T cell differentiation // not recorded /// 0046641 // positive regulation of alpha-beta T cell proliferation // inferred from electronic annotation /// 0046641 // positive regulation of alpha-beta T cell proliferation // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // not recorded /// 0050850 // positive regulation of calcium-mediated signaling // inferred from electronic annotation /// 0050850 // positive regulation of calcium-mediated signaling // not recorded /// 0050852 // T cell receptor signaling pathway // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // not recorded 0001772 // immunological synapse // inferred from electronic annotation /// 0001772 // immunological synapse // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0042101 // T cell receptor complex // inferred from electronic annotation /// 0042101 // T cell receptor complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0001784 // phosphotyrosine binding // inferred from electronic annotation /// 0001784 // phosphotyrosine binding // not recorded /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1393401_at BE109323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109323 /DB_XREF=gi:8501428 /DB_XREF=UI-R-BJ1-auq-f-01-0-UI.s1 /CLONE=UI-R-BJ1-auq-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.65030.1 /TIER=ConsEnd /STK=0 /UG=Rn.65030 /UG_TITLE=ESTs, Weakly similar to T00268 hypothetical protein KIAA0597 (H.sapiens) BE109323 1393402_at BG670858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670858 /DB_XREF=gi:13892957 /DB_XREF=DRNBGF10 /CLONE=DRNBGF10 /FEA=EST /CNT=3 /TID=Rn.51425.1 /TIER=ConsEnd /STK=0 /UG=Rn.51425 /UG_TITLE=ESTs BG670858 1393403_at AI058911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058911 /DB_XREF=gi:3332688 /DB_XREF=UI-R-C1-ks-d-04-0-UI.s1 /CLONE=UI-R-C1-ks-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.19426.1 /TIER=ConsEnd /STK=0 /UG=Rn.19426 /UG_TITLE=ESTs, Weakly similar to FIBA RAT FIBRINOGEN ALPHAALPHA-E CHAIN PRECURSOR (R.norvegicus) AI058911 angiopoietin-like 3 Angptl3 502970 NM_001025065 0006071 // glycerol metabolic process // inferred from electronic annotation /// 0006071 // glycerol metabolic process // not recorded /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // not recorded /// 0006644 // phospholipid metabolic process // not recorded /// 0006644 // phospholipid metabolic process // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0009395 // phospholipid catabolic process // inferred from electronic annotation /// 0009395 // phospholipid catabolic process // not recorded /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0010519 // negative regulation of phospholipase activity // inferred from electronic annotation /// 0010519 // negative regulation of phospholipase activity // not recorded /// 0019915 // lipid storage // inferred from electronic annotation /// 0019915 // lipid storage // not recorded /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0048844 // artery morphogenesis // inferred from electronic annotation /// 0048844 // artery morphogenesis // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0050996 // positive regulation of lipid catabolic process // inferred from electronic annotation /// 0050996 // positive regulation of lipid catabolic process // not recorded /// 0051005 // negative regulation of lipoprotein lipase activity // inferred from electronic annotation /// 0051005 // negative regulation of lipoprotein lipase activity // not recorded /// 0055088 // lipid homeostasis // not recorded /// 0055088 // lipid homeostasis // inferred from electronic annotation /// 0055090 // acylglycerol homeostasis // inferred from electronic annotation /// 0055090 // acylglycerol homeostasis // not recorded /// 0055091 // phospholipid homeostasis // inferred from electronic annotation /// 0055091 // phospholipid homeostasis // not recorded /// 0070328 // triglyceride homeostasis // inferred from electronic annotation /// 0070328 // triglyceride homeostasis // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0004857 // enzyme inhibitor activity // not recorded /// 0004859 // phospholipase inhibitor activity // inferred from electronic annotation /// 0004859 // phospholipase inhibitor activity // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005178 // integrin binding // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0008083 // growth factor activity // not recorded /// 0043498 // cell surface binding // inferred from electronic annotation /// 0043498 // cell surface binding // not recorded 1393404_at BF554746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554746 /DB_XREF=gi:11664476 /DB_XREF=UI-R-C2p-ol-d-12-0-UI.r1 /CLONE=UI-R-C2p-ol-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.28607.1 /TIER=ConsEnd /STK=0 /UG=Rn.28607 /UG_TITLE=ESTs BF554746 reticulon 4 receptor-like 1 Rtn4rl1 303311 NM_181377 0007166 // cell surface receptor linked signaling pathway // non-traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0046658 // anchored to plasma membrane // inferred from direct assay /// 0046658 // anchored to plasma membrane // not recorded /// 0046658 // anchored to plasma membrane // inferred from sequence or structural similarity /// 0046658 // anchored to plasma membrane // inferred from electronic annotation 0004872 // receptor activity // not recorded /// 0004872 // receptor activity // inferred from sequence or structural similarity /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1393405_at AA925444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925444 /DB_XREF=gi:4236635 /DB_XREF=UI-R-A1-ec-d-08-0-UI.s1 /CLONE=UI-R-A1-ec-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.8224.1 /TIER=ConsEnd /STK=0 /UG=Rn.8224 /UG_TITLE=ESTs AA925444 X-ray repair complementing defective repair in Chinese hamster cells 2 Xrcc2 499966 NM_001109215 0000724 // double-strand break repair via homologous recombination // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006281 // DNA repair // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0010165 // response to X-ray // not recorded /// 0010332 // response to gamma radiation // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0050769 // positive regulation of neurogenesis // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008094 // DNA-dependent ATPase activity // inferred from electronic annotation 1393406_at AI576602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576602 /DB_XREF=gi:4560978 /DB_XREF=UI-R-Y0-vd-d-03-0-UI.s1 /CLONE=UI-R-Y0-vd-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.82541.1 /TIER=ConsEnd /STK=0 /UG=Rn.82541 /UG_TITLE=ESTs AI576602 1393407_at AW915859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915859 /DB_XREF=gi:8081569 /DB_XREF=EST347163 /CLONE=RGIDB59 /FEA=EST /CNT=3 /TID=Rn.17910.2 /TIER=ConsEnd /STK=0 /UG=Rn.17910 /UG_TITLE=ESTs, Highly similar to A56640 CDC4 repeat unit-containing protein - mouse (M.musculus) AW915859 F-box and WD repeat domain containing 2 Fbxw2 311881 NM_001107835 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393408_at BF567707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567707 /DB_XREF=gi:11677437 /DB_XREF=UI-R-BO0-ahj-d-06-0-UI.r1 /CLONE=UI-R-BO0-ahj-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.64237.1 /TIER=ConsEnd /STK=0 /UG=Rn.64237 /UG_TITLE=ESTs, Weakly similar to JC4647 KW8 protein - rat (R.norvegicus) BF567707 neurogenic differentiation 6 Neurod6 500137 NM_001109237 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0030528 // transcription regulator activity // inferred from electronic annotation 1393409_at AW143298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143298 /DB_XREF=gi:6163197 /DB_XREF=EST293594 /CLONE=RGIBJ90 /FEA=EST /CNT=2 /TID=Rn.18723.1 /TIER=ConsEnd /STK=0 /UG=Rn.18723 /UG_TITLE=ESTs AW143298 1393410_at BG666397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666397 /DB_XREF=gi:13888319 /DB_XREF=DRACLD07 /CLONE=DRACLD07 /FEA=EST /CNT=2 /TID=Rn.19100.1 /TIER=ConsEnd /STK=0 /UG=Rn.19100 /UG_TITLE=ESTs BG666397 1393411_at BI277565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277565 /DB_XREF=gi:14923562 /DB_XREF=UI-R-CY0-bxs-g-02-0-UI.s1 /CLONE=UI-R-CY0-bxs-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.18940.2 /TIER=ConsEnd /STK=0 /UG=Rn.18940 /UG_TITLE=ESTs, Weakly similar to ATS4_RAT ADAMTS-4 precursor (A disintegrin and metalloproteinase with thrombospondin motifs 4) (ADAM-TS 4) (ADAM-TS4) (Aggrecanase 1) (Fragment) (R.norvegicus) BI277565 complement factor properdin Cfp 299314 NM_001106757 0006957 // complement activation, alternative pathway // not recorded 0005576 // extracellular region // not recorded /// 0031012 // extracellular matrix // not recorded 1393412_at AW920562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920562 /DB_XREF=gi:8086374 /DB_XREF=EST351866 /CLONE=RGIGY75 /FEA=EST /CNT=2 /TID=Rn.82208.1 /TIER=ConsEnd /STK=0 /UG=Rn.82208 /UG_TITLE=ESTs AW920562 family with sequence similarity 3, member C Fam3c 312159 NM_198771 0007275 // multicellular organismal development // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 1393413_at BI290400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290400 /DB_XREF=gi:14948933 /DB_XREF=UI-R-DK0-cfv-g-12-0-UI.s1 /CLONE=UI-R-DK0-cfv-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.51313.1 /TIER=ConsEnd /STK=0 /UG=Rn.51313 /UG_TITLE=ESTs BI290400 similar to RIKEN cDNA 9430031J16 RGD1310964 304376 NM_001107132 1393414_at AW142650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142650 /DB_XREF=gi:6162549 /DB_XREF=EST292902 /CLONE=RGIAR47 /FEA=EST /CNT=2 /TID=Rn.43584.1 /TIER=ConsEnd /STK=0 /UG=Rn.43584 /UG_TITLE=ESTs AW142650 1393415_at BF548891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548891 /DB_XREF=gi:11639998 /DB_XREF=UI-R-A0-af-f-12-0-UI.r1 /CLONE=UI-R-A0-af-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.22472.2 /TIER=ConsEnd /STK=0 /UG=Rn.22472 /UG_TITLE=ESTs BF548891 endothelin receptor type A Ednra 24326 NM_012550 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // not recorded /// 0008217 // regulation of blood pressure // not recorded /// 0014032 // neural crest cell development // inferred from electronic annotation /// 0014032 // neural crest cell development // not recorded /// 0014824 // artery smooth muscle contraction // inferred from electronic annotation /// 0014824 // artery smooth muscle contraction // not recorded /// 0015758 // glucose transport // inferred from electronic annotation /// 0015758 // glucose transport // not recorded /// 0030818 // negative regulation of cAMP biosynthetic process // inferred from electronic annotation /// 0030818 // negative regulation of cAMP biosynthetic process // not recorded /// 0042310 // vasoconstriction // inferred from mutant phenotype /// 0042310 // vasoconstriction // not recorded /// 0042310 // vasoconstriction // inferred from electronic annotation /// 0043278 // response to morphine // inferred from mutant phenotype /// 0050678 // regulation of epithelial cell proliferation // inferred from mutant phenotype /// 0050729 // positive regulation of inflammatory response // inferred from mutant phenotype /// 0051281 // positive regulation of release of sequestered calcium ion into cytosol // inferred from mutant phenotype /// 0051482 // elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger // inferred from mutant phenotype /// 0051928 // positive regulation of calcium ion transport // inferred from mutant phenotype 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030315 // T-tubule // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay 0001599 // endothelin-A receptor activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004962 // endothelin receptor activity // not recorded /// 0004962 // endothelin receptor activity // traceable author statement /// 0004962 // endothelin receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393416_at AI717045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717045 /DB_XREF=gi:5034301 /DB_XREF=UI-R-Y0-acu-c-11-0-UI.s1 /CLONE=UI-R-Y0-acu-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.63791.1 /TIER=ConsEnd /STK=0 /UG=Rn.63791 /UG_TITLE=ESTs AI717045 RAS protein activator like 1 (GAP1 like) Rasal1 360814 NM_001108335 1393417_at BF522397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522397 /DB_XREF=gi:11630364 /DB_XREF=UI-R-C3-tz-b-02-0-UI.r1 /CLONE=UI-R-C3-tz-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.22694.2 /TIER=ConsEnd /STK=0 /UG=Rn.22694 /UG_TITLE=ESTs, Highly similar to AKA2_HUMAN A KINASE ANCHOR PROTEIN 2 (PROTEIN KINASE A ANCHORING PROTEIN 2) (PRKA2) (H.sapiens) BF522397 1393418_at BF567833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567833 /DB_XREF=gi:11677563 /DB_XREF=UI-R-BO0-ahn-b-09-0-UI.r1 /CLONE=UI-R-BO0-ahn-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.45485.2 /TIER=ConsEnd /STK=0 /UG=Rn.45485 /UG_TITLE=ESTs BF567833 tropomodulin 2 Tmod2 58814 NM_031613 0007015 // actin filament organization // traceable author statement /// 0007270 // nerve-nerve synaptic transmission // inferred from electronic annotation /// 0007270 // nerve-nerve synaptic transmission // not recorded /// 0007611 // learning or memory // inferred from electronic annotation /// 0007611 // learning or memory // not recorded /// 0045745 // positive regulation of G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0045745 // positive regulation of G-protein coupled receptor protein signaling pathway // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030426 // growth cone // inferred from direct assay /// 0043005 // neuron projection // inferred from direct assay 0003779 // actin binding // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotation /// 0005523 // tropomyosin binding // inferred from direct assay /// 0005523 // tropomyosin binding // inferred from electronic annotation 1393419_at BF522089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522089 /DB_XREF=gi:11630056 /DB_XREF=UI-R-Y0-abb-f-06-0-UI.r2 /CLONE=UI-R-Y0-abb-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.18963.1 /TIER=ConsEnd /STK=0 /UG=Rn.18963 /UG_TITLE=ESTs, Moderately similar to T50663 RCC1-like G exchanging factor RLG (H.sapiens) BF522089 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 Rcbtb2 290363 NM_199084 0005515 // protein binding // inferred from electronic annotation 1393420_at AI030027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030027 /DB_XREF=gi:3247853 /DB_XREF=UI-R-C0-ja-e-02-0-UI.s1 /CLONE=UI-R-C0-ja-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.33289.1 /TIER=ConsEnd /STK=0 /UG=Rn.33289 /UG_TITLE=ESTs AI030027 1393421_at BG664011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664011 /DB_XREF=gi:13885933 /DB_XREF=DRAABG03 /CLONE=DRAABG03 /FEA=EST /CNT=2 /TID=Rn.7752.2 /TIER=ConsEnd /STK=0 /UG=Rn.7752 /UG_TITLE=ESTs, Moderately similar to AF072864 1 peroxisomal membrane protein PMP 24 (H.sapiens) BG664011 peroxisomal membrane protein 4 Pxmp4 282634 NM_172223 0005777 // peroxisome // inferred from electronic annotation /// 0005777 // peroxisome // not recorded /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1393422_at AW434931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434931 /DB_XREF=gi:6966238 /DB_XREF=UI-R-BJ0p-afg-f-10-0-UI.s1 /CLONE=UI-R-BJ0p-afg-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.54338.1 /TIER=ConsEnd /STK=0 /UG=Rn.54338 /UG_TITLE=ESTs, Weakly similar to SDHL RAT L-SERINE DEHYDRATASEL-THREONINE DEAMINASE (R.norvegicus) AW434931 serine dehydratase-like Sdsl 360816 NM_001108336 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1393423_at H32233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H32233 /DB_XREF=gi:977650 /DB_XREF=EST107128 /CLONE=RPCBM49 /FEA=EST /CNT=2 /TID=Rn.75288.1 /TIER=ConsEnd /STK=0 /UG=Rn.75288 /UG_TITLE=ESTs H32233 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 Tnks2 309512 NM_001107607 0000723 // telomere maintenance // not recorded /// 0006471 // protein ADP-ribosylation // not recorded /// 0035264 // multicellular organism growth // not recorded /// 0040014 // regulation of multicellular organism growth // not recorded /// 0070198 // protein localization to chromosome, telomeric region // not recorded 0000242 // pericentriolar material // not recorded /// 0005634 // nucleus // not recorded /// 0005635 // nuclear envelope // not recorded /// 0005737 // cytoplasm // not recorded /// 0005792 // microsome // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from electronic annotation /// 0003950 // NAD+ ADP-ribosyltransferase activity // not recorded 1393424_at BF560755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF560755 /DB_XREF=gi:11670485 /DB_XREF=UI-R-C1-kk-f-04-0-UI.r2 /CLONE=UI-R-C1-kk-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.16058.1 /TIER=ConsEnd /STK=0 /UG=Rn.16058 /UG_TITLE=ESTs BF560755 1393425_at BF543379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543379 /DB_XREF=gi:11634486 /DB_XREF=UI-R-C3-tp-g-09-0-UI.r1 /CLONE=UI-R-C3-tp-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.20345.1 /TIER=ConsEnd /STK=0 /UG=Rn.20345 /UG_TITLE=ESTs BF543379 1393426_at BG374465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374465 /DB_XREF=gi:13298937 /DB_XREF=UI-R-CV1-bsp-g-01-0-UI.s1 /CLONE=UI-R-CV1-bsp-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.66216.1 /TIER=ConsEnd /STK=0 /UG=Rn.66216 /UG_TITLE=ESTs BG374465 phosphodiesterase 6A, cGMP-specific, rod, alpha Pde6a 307401 NM_001107386 0007165 // signal transduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393427_s_at BF287675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287675 /DB_XREF=gi:11218745 /DB_XREF=EST452266 /CLONE=RGIGI63 /FEA=EST /CNT=2 /TID=Rn.55456.1 /TIER=ConsEnd /STK=0 /UG=Rn.55456 /UG_TITLE=ESTs, Weakly similar to T09065 hypothetical protein - mouse (M.musculus) BF287675 EGF-like-domain, multiple 7 Egfl7 245963 NM_139104 0001525 // angiogenesis // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0001568 // blood vessel development // inferred from sequence or structural similarity /// 0001568 // blood vessel development // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0001570 // vasculogenesis // inferred from sequence or structural similarity /// 0001570 // vasculogenesis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0030336 // negative regulation of cell migration // not recorded 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005509 // calcium ion binding // inferred from electronic annotation 1393428_at BF398638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398638 /DB_XREF=gi:11383635 /DB_XREF=UI-R-BS2-ber-b-06-0-UI.s1 /CLONE=UI-R-BS2-ber-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.14806.1 /TIER=ConsEnd /STK=0 /UG=Rn.14806 /UG_TITLE=ESTs BF398638 1393429_at AI044048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044048 /DB_XREF=gi:3290951 /DB_XREF=UI-R-C1-jv-e-12-0-UI.s1 /CLONE=UI-R-C1-jv-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.20719.1 /TIER=ConsEnd /STK=0 /UG=Rn.20719 /UG_TITLE=ESTs AI044048 1393430_at BG668387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668387 /DB_XREF=gi:13890309 /DB_XREF=DRA05D11 /CLONE=DRA05D11 /FEA=EST /CNT=2 /TID=Rn.15947.2 /TIER=ConsEnd /STK=0 /UG=Rn.15947 /UG_TITLE=ESTs, Highly similar to TRAB_HUMAN TRABID protein (H.sapiens) BG668387 zinc finger, RAN-binding domain containing 1 protein-like LOC100360606 100360606 XM_002725768 /// XM_002728842 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1393431_at AI500737 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI500737 /DB_XREF=gi:4398588 /DB_XREF=UI-R-C2p-rn-b-05-0-UI.s1 /CLONE=UI-R-C2p-rn-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.29130.1 /TIER=ConsEnd /STK=0 /UG=Rn.29130 /UG_TITLE=ESTs, Weakly similar to S43930 U2af binding protein homolog - mouse (M.musculus) AI500737 similar to Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor 35 kDa subunit) (U2 snRNP auxiliary factor small subunit) LOC687575 687575 NM_001044291 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393432_a_at AA899840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899840 /DB_XREF=gi:4232333 /DB_XREF=UI-R-E0-cq-f-12-0-UI.s2 /CLONE=UI-R-E0-cq-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.2744.2 /TIER=ConsEnd /STK=0 /UG=Rn.2744 /UG_TITLE=ESTs AA899840 DEAH (Asp-Glu-Ala-His) box polypeptide 36 Dhx36 310461 NM_001107678 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1393433_at AI144872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144872 /DB_XREF=gi:3666671 /DB_XREF=UI-R-BT0-pm-h-06-0-UI.s1 /CLONE=UI-R-BT0-pm-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.27713.1 /TIER=ConsEnd /STK=0 /UG=Rn.27713 /UG_TITLE=ESTs AI144872 EGF-like, fibronectin type III and laminin G domains Egflam 365691 NM_001108938 0010811 // positive regulation of cell-substrate adhesion // not recorded /// 0019800 // peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan // not recorded /// 0030198 // extracellular matrix organization // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005614 // interstitial matrix // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005539 // glycosaminoglycan binding // not recorded 1393434_at AI145492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145492 /DB_XREF=gi:3667291 /DB_XREF=UI-R-BT0-qf-f-09-0-UI.s1 /CLONE=UI-R-BT0-qf-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.28499.1 /TIER=ConsEnd /STK=0 /UG=Rn.28499 /UG_TITLE=ESTs AI145492 1393435_at AI575267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575267 /DB_XREF=gi:4559643 /DB_XREF=UI-R-Y0-vc-e-09-0-UI.s1 /CLONE=UI-R-Y0-vc-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.37890.1 /TIER=ConsEnd /STK=0 /UG=Rn.37890 /UG_TITLE=ESTs AI575267 Phospholipase C, eta 2 Plch2 313756 XM_001077247 /// XM_233728 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030384 // phosphoinositide metabolic process // not recorded 0005886 // plasma membrane // not recorded 0004435 // phosphoinositide phospholipase C activity // inferred from electronic annotation /// 0004629 // phospholipase C activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1393436_at AI549033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549033 /DB_XREF=gi:4466521 /DB_XREF=UI-R-C3-tv-f-11-0-UI.s1 /CLONE=UI-R-C3-tv-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.41707.1 /TIER=ConsEnd /STK=0 /UG=Rn.41707 /UG_TITLE=ESTs, Highly similar to S17449 probable ligand-binding protein RYD5 - rat (R.norvegicus) AI549033 secretoglobin, family 1C, member 1 Scgb1c1 309100 NM_001107561 0005576 // extracellular region // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1393437_at AW142608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142608 /DB_XREF=gi:6162507 /DB_XREF=EST292860 /CLONE=RGIAQ57 /FEA=EST /CNT=2 /TID=Rn.7792.2 /TIER=ConsEnd /STK=0 /UG=Rn.7792 /UG_TITLE=ESTs AW142608 1393438_at AI710341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI710341 /DB_XREF=gi:5000117 /DB_XREF=UI-R-AD1-zu-e-09-0-UI.s1 /CLONE=UI-R-AD1-zu-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.40708.1 /TIER=ConsEnd /STK=0 /UG=Rn.40708 /UG_TITLE=ESTs AI710341 zinc finger protein 316 Zfp316 304293 NM_001107121 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393439_a_at AI045767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045767 /DB_XREF=gi:3292586 /DB_XREF=UI-R-C1-kl-e-01-0-UI.s1 /CLONE=UI-R-C1-kl-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.16308.1 /TIER=ConsEnd /STK=0 /UG=Rn.16308 /UG_TITLE=ESTs AI045767 ankylosis, progressive homolog (mouse) Ankh 114506 NM_053714 0006810 // transport // inferred from electronic annotation /// 0006817 // phosphate transport // inferred from electronic annotation /// 0006817 // phosphate transport // traceable author statement /// 0030500 // regulation of bone mineralization // not recorded /// 0030500 // regulation of bone mineralization // inferred from sequence or structural similarity /// 0030500 // regulation of bone mineralization // traceable author statement /// 0030505 // inorganic diphosphate transport // not recorded /// 0034220 // ion transmembrane transport // not recorded 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // traceable author statement 0005315 // inorganic phosphate transmembrane transporter activity // not recorded /// 0005315 // inorganic phosphate transmembrane transporter activity // traceable author statement /// 0015114 // phosphate transmembrane transporter activity // inferred from electronic annotation /// 0030504 // inorganic diphosphate transmembrane transporter activity // not recorded /// 0030504 // inorganic diphosphate transmembrane transporter activity // inferred from sequence or structural similarity 1393440_at AI071835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071835 /DB_XREF=gi:3398050 /DB_XREF=UI-R-C2-nh-d-06-0-UI.s1 /CLONE=UI-R-C2-nh-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.20652.1 /TIER=ConsEnd /STK=0 /UG=Rn.20652 /UG_TITLE=ESTs AI071835 1393441_at BI395605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI395605 /DB_XREF=gi:15090989 /DB_XREF=EST531476 /CLONE=RGIBT15 /FEA=EST /CNT=2 /TID=Rn.79109.1 /TIER=ConsEnd /STK=0 /UG=Rn.79109 /UG_TITLE=ESTs, Highly similar to CDN7 MOUSE CYCLIN-DEPENDENT KINASE 4 INHIBITOR D (M.musculus) BI395605 similar to cyclin-dependent kinase inhibitor 2D Cdkn2d 494444 NM_001009719 0016301 // kinase activity // inferred from electronic annotation 1393442_at AI071817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071817 /DB_XREF=gi:3398032 /DB_XREF=UI-R-C2-nh-b-06-0-UI.s1 /CLONE=UI-R-C2-nh-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.20648.1 /TIER=ConsEnd /STK=0 /UG=Rn.20648 /UG_TITLE=ESTs AI071817 1393443_a_at AW434918 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434918 /DB_XREF=gi:6966225 /DB_XREF=UI-R-BJ0p-afg-e-09-0-UI.s1 /CLONE=UI-R-BJ0p-afg-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.30995.1 /TIER=ConsEnd /STK=0 /UG=Rn.30995 /UG_TITLE=ESTs, Weakly similar to F25H2.4.p (Caenorhabditis elegans) (C.elegans) AW434918 family with sequence similarity 158, member A Fam158a 290224 NM_001008296 1393445_at AA925317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925317 /DB_XREF=gi:4236508 /DB_XREF=UI-R-A1-ek-g-04-0-UI.s1 /CLONE=UI-R-A1-ek-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.15495.1 /TIER=ConsEnd /STK=0 /UG=Rn.15495 /UG_TITLE=ESTs AA925317 1393446_at BI290444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290444 /DB_XREF=gi:14949024 /DB_XREF=UI-R-DK0-cfw-d-03-0-UI.s1 /CLONE=UI-R-DK0-cfw-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.15389.1 /TIER=ConsEnd /STK=0 /UG=Rn.15389 /UG_TITLE=ESTs BI290444 1393447_at BG380625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380625 /DB_XREF=gi:13305097 /DB_XREF=UI-R-CT0-btz-e-05-0-UI.s1 /CLONE=UI-R-CT0-btz-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.12452.1 /TIER=ConsEnd /STK=0 /UG=Rn.12452 /UG_TITLE=ESTs BG380625 kinesin family member 7 Kif7 293047 XM_001065361 /// XM_218828 0007018 // microtubule-based movement // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1393449_at BI290037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290037 /DB_XREF=gi:14948227 /DB_XREF=UI-R-DK0-cfr-b-01-0-UI.s1 /CLONE=UI-R-DK0-cfr-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.38612.1 /TIER=ConsEnd /STK=0 /UG=Rn.38612 /UG_TITLE=ESTs, Weakly similar to NTAK RAT NTAK PROTEIN PRECURSOR (R.norvegicus) BI290037 junctional adhesion molecule 2 Jam2 619374 NM_001034004 0005886 // plasma membrane // not recorded 1393450_at BI292896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292896 /DB_XREF=gi:14953865 /DB_XREF=UI-R-DO0-cix-n-17-0-UI.s1 /CLONE=UI-R-DO0-cix-n-17-0-UI /FEA=EST /CNT=2 /TID=Rn.50695.1 /TIER=ConsEnd /STK=0 /UG=Rn.50695 /UG_TITLE=ESTs BI292896 1393451_at BI295149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295149 /DB_XREF=gi:14958305 /DB_XREF=UI-R-DK0-ceg-d-04-0-UI.s1 /CLONE=UI-R-DK0-ceg-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.65502.1 /TIER=ConsEnd /STK=0 /UG=Rn.65502 /UG_TITLE=ESTs BI295149 centromere protein N Cenpn 361416 NM_001008366 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 1393452_at BM391835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391835 /DB_XREF=gi:18191888 /DB_XREF=UI-R-DO1-cmk-f-08-0-UI.s1 /CLONE=UI-R-DO1-cmk-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.79316.1 /TIER=ConsEnd /STK=0 /UG=Rn.79316 /UG_TITLE=ESTs BM391835 carbonic anhydrase 9 Car9 313495 NM_001107956 0001666 // response to hypoxia // inferred from expression pattern /// 0002009 // morphogenesis of an epithelium // not recorded /// 0002009 // morphogenesis of an epithelium // inferred from electronic annotation /// 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0046903 // secretion // not recorded /// 0046903 // secretion // inferred from electronic annotation 0016323 // basolateral plasma membrane // inferred from direct assay 0004089 // carbonate dehydratase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393453_at BI290287 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290287 /DB_XREF=gi:14948718 /DB_XREF=UI-R-DK0-cfu-e-01-0-UI.s1 /CLONE=UI-R-DK0-cfu-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.47798.1 /TIER=ConsEnd /STK=0 /UG=Rn.47798 /UG_TITLE=ESTs, Weakly similar to T14152 synaptic scaffolding protein S-SCAM - rat (R.norvegicus) BI290287 salvador homolog 1 (Drosophila) Sav1 299116 NM_001097581 0007165 // signal transduction // inferred from electronic annotation /// 0035329 // hippo signaling cascade // not recorded /// 0035329 // hippo signaling cascade // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1393454_at BF558981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558981 /DB_XREF=gi:11668711 /DB_XREF=UI-R-A0-bb-b-05-0-UI.r1 /CLONE=UI-R-A0-bb-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.65532.1 /TIER=ConsEnd /STK=0 /UG=Rn.65532 /UG_TITLE=ESTs BF558981 protocadherin 17 Pcdh17 306055 NM_001107279 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1393455_at AA998007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998007 /DB_XREF=gi:4286864 /DB_XREF=UI-R-C0-hx-e-03-0-UI.s1 /CLONE=UI-R-C0-hx-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.33158.2 /TIER=ConsEnd /STK=0 /UG=Rn.33158 /UG_TITLE=ESTs AA998007 1393456_at BI281195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281195 /DB_XREF=gi:14930685 /DB_XREF=UI-R-CT0s-cat-e-01-0-UI.s1 /CLONE=UI-R-CT0s-cat-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.16610.1 /TIER=ConsEnd /STK=0 /UG=Rn.16610 /UG_TITLE=ESTs BI281195 1393457_at BI289669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289669 /DB_XREF=gi:14947467 /DB_XREF=UI-R-DK0-cfi-g-02-0-UI.s1 /CLONE=UI-R-DK0-cfi-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.18365.1 /TIER=ConsEnd /STK=0 /UG=Rn.18365 /UG_TITLE=ESTs BI289669 1393458_s_at BE107536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107536 /DB_XREF=gi:8499641 /DB_XREF=UI-R-BS1-ayu-h-02-0-UI.s1 /CLONE=UI-R-BS1-ayu-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.12860.2 /TIER=ConsEnd /STK=0 /UG=Rn.12860 /UG_TITLE=ESTs BE107536 PHD finger protein 14 Phf14 500030 NM_001110492 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393459_at AI705393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI705393 /DB_XREF=gi:4993293 /DB_XREF=UI-R-AC1-xs-c-04-0-UI.s1 /CLONE=UI-R-AC1-xs-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.40595.1 /TIER=ConsEnd /STK=0 /UG=Rn.40595 /UG_TITLE=ESTs, Highly similar to FMR1 MOUSE FRAGILE X MENTAL RETARDATION PROTEIN 1 HOMOLOG (M.musculus) AI705393 fragile X mental retardation 1 Fmr1 24948 NM_052804 0006417 // regulation of translation // traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0045947 // negative regulation of translational initiation // inferred from sequence or structural similarity /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005844 // polysome // inferred from direct assay /// 0005845 // mRNA cap binding complex // inferred from sequence or structural similarity /// 0019717 // synaptosome // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0003723 // RNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1393460_at BM388665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388665 /DB_XREF=gi:18188718 /DB_XREF=UI-R-DZ0-ckm-p-11-0-UI.s1 /CLONE=UI-R-DZ0-ckm-p-11-0-UI /FEA=EST /CNT=2 /TID=Rn.45465.1 /TIER=ConsEnd /STK=0 /UG=Rn.45465 /UG_TITLE=ESTs, Weakly similar to S42799 garp precursor (H.sapiens) BM388665 leucine rich repeat containing 33 Lrrc33 303875 NM_001024995 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1393461_at BM392157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392157 /DB_XREF=gi:18192210 /DB_XREF=UI-R-DO1-ckp-e-24-0-UI.s1 /CLONE=UI-R-DO1-ckp-e-24-0-UI /FEA=EST /CNT=2 /TID=Rn.45920.1 /TIER=ConsEnd /STK=0 /UG=Rn.45920 /UG_TITLE=ESTs BM392157 zinc finger protein 317 Zfp317 500950 NM_001134634 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393462_at BF412557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412557 /DB_XREF=gi:11400546 /DB_XREF=UI-R-BT1-bnp-b-04-0-UI.s1 /CLONE=UI-R-BT1-bnp-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.62113.1 /TIER=ConsEnd /STK=0 /UG=Rn.62113 /UG_TITLE=ESTs BF412557 leucine rich repeat containing 18 Lrrc18 306278 NM_001013999 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1393463_at BM390801 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390801 /DB_XREF=gi:18190854 /DB_XREF=UI-R-CN1-cjo-f-04-0-UI.s1 /CLONE=UI-R-CN1-cjo-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.47482.1 /TIER=ConsEnd /STK=0 /UG=Rn.47482 /UG_TITLE=ESTs, Moderately similar to T46920 hypothetical protein DKFZp434P0111.1 (H.sapiens) BM390801 transmembrane protein 63c Tmem63c 314332 NM_001108045 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1393464_at BM383378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383378 /DB_XREF=gi:18183431 /DB_XREF=UI-R-DM1-cka-k-07-0-UI.s1 /CLONE=UI-R-DM1-cka-k-07-0-UI /FEA=EST /CNT=2 /TID=Rn.64417.1 /TIER=ConsEnd /STK=0 /UG=Rn.64417 /UG_TITLE=ESTs BM383378 similar to RIKEN cDNA 4930550C14 RGD1311251 315665 NM_001024265 1393465_at BE103258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103258 /DB_XREF=gi:8495357 /DB_XREF=UI-R-BX0-aqy-e-03-0-UI.s1 /CLONE=UI-R-BX0-aqy-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.13545.2 /TIER=ConsEnd /STK=0 /UG=Rn.13545 /UG_TITLE=ESTs, Weakly similar to CIN_DROME Molybdenum cofactor synthesis protein cinnamon (D.melanogaster) BE103258 1393466_at BF411837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411837 /DB_XREF=gi:11399826 /DB_XREF=UI-R-BT1-bmw-h-02-0-UI.s1 /CLONE=UI-R-BT1-bmw-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.16127.1 /TIER=ConsEnd /STK=0 /UG=Rn.16127 /UG_TITLE=ESTs BF411837 sialomucin core protein 24-like LOC100359977 100359977 XM_002726634 /// XM_002729547 1393467_at BF549923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549923 /DB_XREF=gi:11659653 /DB_XREF=UI-R-E0-bv-c-10-0-UI.r1 /CLONE=UI-R-E0-bv-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.22620.2 /TIER=ConsEnd /STK=0 /UG=Rn.22620 /UG_TITLE=ESTs, Highly similar to SERINE PROTEASE PC6 PRECURSOR (R.norvegicus) BF549923 proprotein convertase subtilisin/kexin type 5 Pcsk5 116548 XM_001078022 /// XM_342032 0001822 // kidney development // not recorded /// 0002001 // renin secretion into blood stream // not recorded /// 0006465 // signal peptide processing // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007566 // embryo implantation // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0016486 // peptide hormone processing // not recorded /// 0019067 // viral assembly, maturation, egress, and release // not recorded /// 0030323 // respiratory tube development // not recorded /// 0032455 // nerve growth factor processing // not recorded /// 0035108 // limb morphogenesis // not recorded /// 0042089 // cytokine biosynthetic process // not recorded /// 0043043 // peptide biosynthetic process // not recorded /// 0048566 // embryonic digestive tract development // not recorded /// 0048706 // embryonic skeletal system development // not recorded /// 0051605 // protein maturation by peptide bond cleavage // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005796 // Golgi lumen // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030141 // stored secretory granule // not recorded 0004175 // endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042277 // peptide binding // not recorded 1393468_at BF556423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556423 /DB_XREF=gi:11666153 /DB_XREF=UI-R-E1-fh-b-08-0-UI.r1 /CLONE=UI-R-E1-fh-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.48907.2 /TIER=ConsEnd /STK=0 /UG=Rn.48907 /UG_TITLE=ESTs, Moderately similar to AF151849 1 CGI-91 protein (H.sapiens) BF556423 mitochondrial ribosomal protein S2 Mrps2 362094 NM_001108576 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1393469_at BE102340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102340 /DB_XREF=gi:8494439 /DB_XREF=UI-R-BT1-aql-d-09-0-UI.s1 /CLONE=UI-R-BT1-aql-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.49598.2 /TIER=ConsEnd /STK=0 /UG=Rn.49598 /UG_TITLE=ESTs BE102340 1393470_at BE097303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097303 /DB_XREF=gi:8488234 /DB_XREF=UI-R-BO1-apv-g-06-0-UI.s1 /CLONE=UI-R-BO1-apv-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.61982.1 /TIER=ConsEnd /STK=0 /UG=Rn.61982 /UG_TITLE=ESTs BE097303 1393471_at AI175908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175908 /DB_XREF=gi:3726546 /DB_XREF=EST219480 /CLONE=ROVBH08 /FEA=EST /CNT=2 /TID=Rn.13862.1 /TIER=ConsEnd /STK=0 /UG=Rn.13862 /UG_TITLE=ESTs AI175908 1393472_at AI072025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072025 /DB_XREF=gi:3398219 /DB_XREF=UI-R-C2-nd-e-11-0-UI.s1 /CLONE=UI-R-C2-nd-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.12174.1 /TIER=ConsEnd /STK=0 /UG=Rn.12174 /UG_TITLE=ESTs AI072025 1393473_at BM390382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390382 /DB_XREF=gi:18190435 /DB_XREF=UI-R-CN1-cjq-h-05-0-UI.s1 /CLONE=UI-R-CN1-cjq-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.20195.1 /TIER=ConsEnd /STK=0 /UG=Rn.20195 /UG_TITLE=ESTs BM390382 RGD1563866 RGD1563866 315652 XM_001071358 /// XM_002727058 /// XM_002729921 /// XM_236231 1393474_at BF285952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285952 /DB_XREF=gi:11217022 /DB_XREF=EST450543 /CLONE=RGIFL27 /FEA=EST /CNT=2 /TID=Rn.12882.2 /TIER=ConsEnd /STK=0 /UG=Rn.12882 /UG_TITLE=ESTs, Weakly similar to SUH2 RAT PROBABLE ALCOHOL SULFOTRANSFERASE (R.norvegicus) BF285952 sulfotransferase family, cytosolic, 2B, member 1 Sult2b1 292915 NM_001039665 0000103 // sulfate assimilation // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008202 // steroid metabolic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004027 // alcohol sulfotransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008146 // sulfotransferase activity // not recorded /// 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0050294 // steroid sulfotransferase activity // not recorded 1393475_at AI045487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045487 /DB_XREF=gi:3292306 /DB_XREF=UI-R-C1-kj-c-07-0-UI.s1 /CLONE=UI-R-C1-kj-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.16233.1 /TIER=ConsEnd /STK=0 /UG=Rn.16233 /UG_TITLE=ESTs AI045487 malic enzyme 2, NAD(+)-dependent, mitochondrial Me2 307270 NM_001107376 0006108 // malate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004470 // malic enzyme activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation 1393476_at AI717594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717594 /DB_XREF=gi:5034850 /DB_XREF=UI-R-Y0-ack-b-04-0-UI.s1 /CLONE=UI-R-Y0-ack-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.27068.1 /TIER=ConsEnd /STK=0 /UG=Rn.27068 /UG_TITLE=ESTs AI717594 Similar to mKIAA0195 protein RGD1309310 303677 XR_009492 /// XR_085974 1393477_at AI548924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548924 /DB_XREF=gi:4466412 /DB_XREF=UI-R-C3-tp-h-09-0-UI.s1 /CLONE=UI-R-C3-tp-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.41844.1 /TIER=ConsEnd /STK=0 /UG=Rn.41844 /UG_TITLE=ESTs AI548924 1393478_at AI029492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029492 /DB_XREF=gi:4298934 /DB_XREF=UI-R-C0-iw-f-01-0-UI.s1 /CLONE=UI-R-C0-iw-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.18238.1 /TIER=ConsEnd /STK=0 /UG=Rn.18238 /UG_TITLE=ESTs AI029492 1393479_at BF554479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554479 /DB_XREF=gi:11664209 /DB_XREF=UI-R-E1-gf-e-03-0-UI.r1 /CLONE=UI-R-E1-gf-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.23319.3 /TIER=ConsEnd /STK=0 /UG=Rn.23319 /UG_TITLE=ESTs BF554479 1393480_at AW919998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919998 /DB_XREF=gi:8085804 /DB_XREF=EST351302 /CLONE=RGIGP48 /FEA=EST /CNT=2 /TID=Rn.41005.2 /TIER=ConsEnd /STK=0 /UG=Rn.41005 /UG_TITLE=ESTs, Highly similar to IPP2 RAT PROTEIN PHOSPHATASE INHIBITOR 2 (R.norvegicus) AW919998 protein phosphatase 1, regulatory (inhibitor) subunit 2 Ppp1r2 192361 NM_138823 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0009966 // regulation of signal transduction // inferred from electronic annotation /// 0043666 // regulation of phosphoprotein phosphatase activity // inferred from electronic annotation 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from electronic annotation 1393481_at BM390812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390812 /DB_XREF=gi:18190865 /DB_XREF=UI-R-CN1-cjo-h-04-0-UI.s1 /CLONE=UI-R-CN1-cjo-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.56536.1 /TIER=ConsEnd /STK=0 /UG=Rn.56536 /UG_TITLE=ESTs BM390812 1393482_at AI045330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045330 /DB_XREF=gi:3292149 /DB_XREF=UI-R-C1-kh-e-03-0-UI.s1 /CLONE=UI-R-C1-kh-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.16180.1 /TIER=ConsEnd /STK=0 /UG=Rn.16180 /UG_TITLE=ESTs AI045330 1393483_at AI501248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501248 /DB_XREF=gi:4399099 /DB_XREF=UI-R-C2p-ry-e-06-0-UI.s1 /CLONE=UI-R-C2p-ry-e-06-0-UI /FEA=EST /CNT=6 /TID=Rn.22167.1 /TIER=ConsEnd /STK=5 /UG=Rn.22167 /UG_TITLE=ESTs AI501248 1393484_at AI715391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715391 /DB_XREF=gi:5032644 /DB_XREF=UI-R-Y0-abm-a-04-0-UI.s1 /CLONE=UI-R-Y0-abm-a-04-0-UI /FEA=EST /CNT=5 /TID=Rn.23580.1 /TIER=ConsEnd /STK=4 /UG=Rn.23580 /UG_TITLE=ESTs AI715391 1393485_at AI716589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716589 /DB_XREF=gi:5033845 /DB_XREF=UI-R-Y0-abi-h-07-0-UI.s1 /CLONE=UI-R-Y0-abi-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.20289.1 /TIER=ConsEnd /STK=4 /UG=Rn.20289 /UG_TITLE=ESTs AI716589 1393486_at AI111519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111519 /DB_XREF=gi:3511561 /DB_XREF=UI-R-Y0-ma-c-10-0-UI.s1 /CLONE=UI-R-Y0-ma-c-10-0-UI /FEA=EST /CNT=4 /TID=Rn.20301.1 /TIER=ConsEnd /STK=4 /UG=Rn.20301 /UG_TITLE=ESTs, Weakly similar to CYTOCHROME P450 4B1 (R.norvegicus) AI111519 cytochrome P450, family 46, subfamily a, polypeptide 1 Cyp46a1 362782 NM_001108723 0055114 // oxidation reduction // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393487_at AI045420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045420 /DB_XREF=gi:3292239 /DB_XREF=UI-R-C1-kg-f-09-0-UI.s1 /CLONE=UI-R-C1-kg-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.16165.3 /TIER=ConsEnd /STK=3 /UG=Rn.16165 /UG_TITLE=ESTs, Weakly similar to I57019 H3 histone - rat (R.norvegicus) AI045420 Centromere protein A Cenpa 298850 NM_001106711 0000132 // establishment of mitotic spindle orientation // inferred from electronic annotation /// 0000132 // establishment of mitotic spindle orientation // not recorded /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0051382 // kinetochore assembly // inferred from electronic annotation /// 0051382 // kinetochore assembly // not recorded /// 0071459 // protein localization to chromosome, centromeric region // inferred from electronic annotation /// 0071459 // protein localization to chromosome, centromeric region // not recorded 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000775 // chromosome, centromeric region // not recorded /// 0000778 // condensed nuclear chromosome kinetochore // inferred from electronic annotation /// 0000778 // condensed nuclear chromosome kinetochore // not recorded /// 0000780 // condensed nuclear chromosome, centromeric region // not recorded /// 0000780 // condensed nuclear chromosome, centromeric region // inferred from electronic annotation /// 0000786 // nucleosome // inferred from electronic annotation /// 0000939 // condensed chromosome inner kinetochore // inferred from electronic annotation /// 0000939 // condensed chromosome inner kinetochore // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393488_at AI103612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103612 /DB_XREF=gi:3708139 /DB_XREF=EST212901 /CLONE=REMCE15 /FEA=EST /CNT=4 /TID=Rn.22451.1 /TIER=ConsEnd /STK=3 /UG=Rn.22451 /UG_TITLE=ESTs AI103612 1393489_at AW527282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527282 /DB_XREF=gi:7169696 /DB_XREF=UI-R-BO1-ajs-e-07-0-UI.s1 /CLONE=UI-R-BO1-ajs-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.46431.1 /TIER=ConsEnd /STK=3 /UG=Rn.46431 /UG_TITLE=ESTs AW527282 Rsb-66 protein Rsb66 296610 NM_181694 1393490_at AI501671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501671 /DB_XREF=gi:4399522 /DB_XREF=UI-R-C0-ir-g-08-0-UI.s1 /CLONE=UI-R-C0-ir-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.23781.1 /TIER=ConsEnd /STK=3 /UG=Rn.23781 /UG_TITLE=ESTs AI501671 component of oligomeric golgi complex 7 Cog7 293456 NM_001033889 0006486 // protein glycosylation // inferred from electronic annotation /// 0006486 // protein glycosylation // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0033365 // protein localization in organelle // not recorded /// 0033365 // protein localization in organelle // inferred from electronic annotation /// 0034067 // protein localization in Golgi apparatus // inferred from electronic annotation /// 0034067 // protein localization in Golgi apparatus // not recorded /// 0050821 // protein stabilization // inferred from electronic annotation /// 0050821 // protein stabilization // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0017119 // Golgi transport complex // inferred from electronic annotation /// 0017119 // Golgi transport complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393491_at BF398496 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398496 /DB_XREF=gi:11383487 /DB_XREF=UI-R-BS2-bep-e-04-0-UI.s1 /CLONE=UI-R-BS2-bep-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.59096.1 /TIER=ConsEnd /STK=3 /UG=Rn.59096 /UG_TITLE=ESTs BF398496 transducin (beta)-like 1 X-linked Tbl1x 302711 NM_001106964 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0007605 // sensory perception of sound // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043627 // response to estrogen stimulus // inferred from electronic annotation /// 0043627 // response to estrogen stimulus // not recorded /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045444 // fat cell differentiation // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048545 // response to steroid hormone stimulus // not recorded /// 0048545 // response to steroid hormone stimulus // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005876 // spindle microtubule // not recorded /// 0017053 // transcriptional repressor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008013 // beta-catenin binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0019904 // protein domain specific binding // not recorded /// 0042393 // histone binding // not recorded 1393492_at BE107812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107812 /DB_XREF=gi:8499917 /DB_XREF=UI-R-CA0-awx-b-09-0-UI.s1 /CLONE=UI-R-CA0-awx-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.51296.1 /TIER=ConsEnd /STK=3 /UG=Rn.51296 /UG_TITLE=ESTs BE107812 1393493_at BE117956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117956 /DB_XREF=gi:8510061 /DB_XREF=UI-R-BS1-azm-h-12-0-UI.s1 /CLONE=UI-R-BS1-azm-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.52458.1 /TIER=ConsEnd /STK=3 /UG=Rn.52458 /UG_TITLE=ESTs BE117956 1393494_at AA866419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866419 /DB_XREF=gi:4230639 /DB_XREF=UI-R-E0-ch-c-04-0-UI.s1 /CLONE=UI-R-E0-ch-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.3099.2 /TIER=ConsEnd /STK=3 /UG=Rn.3099 /UG_TITLE=ESTs AA866419 1393495_at AI043752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043752 /DB_XREF=gi:3290487 /DB_XREF=UI-R-C0-jm-a-11-0-UI.s1 /CLONE=UI-R-C0-jm-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.12380.1 /TIER=ConsEnd /STK=3 /UG=Rn.12380 /UG_TITLE=ESTs AI043752 1393496_at BF566173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF566173 /DB_XREF=gi:11675903 /DB_XREF=UI-R-BT1-aka-a-07-0-UI.r1 /CLONE=UI-R-BT1-aka-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.49140.1 /TIER=ConsEnd /STK=3 /UG=Rn.49140 /UG_TITLE=ESTs BF566173 testicular haploid expressed gene Theg 299599 NM_001013102 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393497_at AA964476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964476 /DB_XREF=gi:4279350 /DB_XREF=UI-R-E1-go-f-12-0-UI.s1 /CLONE=UI-R-E1-go-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.23226.1 /TIER=ConsEnd /STK=3 /UG=Rn.23226 /UG_TITLE=ESTs AA964476 1393498_at AI237455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237455 /DB_XREF=gi:3830961 /DB_XREF=EST234017 /CLONE=RPLCZ33 /FEA=EST /CNT=3 /TID=Rn.25568.1 /TIER=ConsEnd /STK=3 /UG=Rn.25568 /UG_TITLE=ESTs, Weakly similar to S00840 hemoglobin beta chain, minor - rat (R.norvegicus) AI237455 1393499_at AA964375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964375 /DB_XREF=gi:4279250 /DB_XREF=UI-R-C0-gw-h-04-0-UI.s1 /CLONE=UI-R-C0-gw-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.12063.1 /TIER=ConsEnd /STK=3 /UG=Rn.12063 /UG_TITLE=ESTs AA964375 phosphoinositide-3-kinase, catalytic, alpha polypeptide Pik3ca 170911 NM_133399 /// XM_001059350 /// XM_001063573 0006006 // glucose metabolic process // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0040014 // regulation of multicellular organism growth // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043491 // protein kinase B signaling cascade // not recorded /// 0046854 // phosphoinositide phosphorylation // inferred from direct assay /// 0046854 // phosphoinositide phosphorylation // not recorded /// 0046854 // phosphoinositide phosphorylation // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation 0005829 // cytosol // not recorded /// 0005942 // phosphoinositide 3-kinase complex // inferred from direct assay /// 0005942 // phosphoinositide 3-kinase complex // not recorded /// 0030027 // lamellipodium // not recorded 0004428 // inositol or phosphatidylinositol kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from direct assay /// 0016303 // 1-phosphatidylinositol-3-kinase activity // not recorded /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0043560 // insulin receptor substrate binding // not recorded /// 0046934 // phosphatidylinositol-4,5-bisphosphate 3-kinase activity // not recorded 1393500_at AI029289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029289 /DB_XREF=gi:4297538 /DB_XREF=UI-R-C0-iq-e-04-0-UI.s1 /CLONE=UI-R-C0-iq-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.23482.1 /TIER=ConsEnd /STK=3 /UG=Rn.23482 /UG_TITLE=ESTs AI029289 1393501_at AI043579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043579 /DB_XREF=gi:3290905 /DB_XREF=UI-R-C1-jt-e-10-0-UI.s1 /CLONE=UI-R-C1-jt-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.14651.2 /TIER=ConsEnd /STK=3 /UG=Rn.14651 /UG_TITLE=ESTs, Highly similar to RNA binding motif protein 5 (H.sapiens) AI043579 1393502_at AI071962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071962 /DB_XREF=gi:3398156 /DB_XREF=UI-R-C2-nl-d-06-0-UI.s1 /CLONE=UI-R-C2-nl-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.20663.1 /TIER=ConsEnd /STK=3 /UG=Rn.20663 /UG_TITLE=ESTs AI071962 transmembrane protein 231 Tmem231 361410 XM_001075665 /// XM_001077738 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1393503_at BE099137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099137 /DB_XREF=gi:8491013 /DB_XREF=UI-R-BJ1-ati-f-11-0-UI.s1 /CLONE=UI-R-BJ1-ati-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.49934.1 /TIER=ConsEnd /STK=3 /UG=Rn.49934 /UG_TITLE=ESTs BE099137 1393504_at AI072549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072549 /DB_XREF=gi:3398743 /DB_XREF=UI-R-C2-ni-f-07-0-UI.s1 /CLONE=UI-R-C2-ni-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.21782.1 /TIER=ConsEnd /STK=3 /UG=Rn.21782 /UG_TITLE=ESTs AI072549 1393505_x_at AI045965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045965 /DB_XREF=gi:3290877 /DB_XREF=UI-R-C1-jt-h-05-0-UI.s1 /CLONE=UI-R-C1-jt-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.15746.2 /TIER=ConsEnd /STK=3 /UG=Rn.15746 /UG_TITLE=ESTs AI045965 family with sequence similarity 63, member B Fam63b 363089 XM_001054973 /// XM_002727085 /// XM_002729937 /// XM_343420 1393506_at BF558068 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558068 /DB_XREF=gi:11667798 /DB_XREF=UI-R-C0-hj-g-09-0-UI.r1 /CLONE=UI-R-C0-hj-g-09-0-UI /FEA=EST /CNT=4 /TID=Rn.12460.1 /TIER=ConsEnd /STK=2 /UG=Rn.12460 /UG_TITLE=ESTs BF558068 1393507_at AI045715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045715 /DB_XREF=gi:3292534 /DB_XREF=UI-R-C1-jy-b-12-0-UI.s2 /CLONE=UI-R-C1-jy-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.16294.1 /TIER=ConsEnd /STK=2 /UG=Rn.16294 /UG_TITLE=ESTs AI045715 1393508_at AI043805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043805 /DB_XREF=gi:3290540 /DB_XREF=UI-R-C0-jj-c-06-0-UI.s1 /CLONE=UI-R-C0-jj-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.18728.1 /TIER=ConsEnd /STK=2 /UG=Rn.18728 /UG_TITLE=ESTs AI043805 1393509_at AI175807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175807 /DB_XREF=gi:3726445 /DB_XREF=EST219377 /CLONE=ROVBF69 /FEA=EST /CNT=3 /TID=Rn.24098.1 /TIER=ConsEnd /STK=2 /UG=Rn.24098 /UG_TITLE=ESTs AI175807 1393510_at AW524463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524463 /DB_XREF=gi:7166853 /DB_XREF=UI-R-BO0-ahx-g-05-0-UI.s1 /CLONE=UI-R-BO0-ahx-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.45128.1 /TIER=ConsEnd /STK=2 /UG=Rn.45128 /UG_TITLE=ESTs AW524463 Golgi-localized protein Golsyn 500865 XM_001064007 /// XM_576264 1393511_at AW533576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533576 /DB_XREF=gi:7175990 /DB_XREF=UI-R-BU0-and-e-09-0-UI.s1 /CLONE=UI-R-BU0-and-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.48145.1 /TIER=ConsEnd /STK=2 /UG=Rn.48145 /UG_TITLE=ESTs AW533576 galactose-3-O-sulfotransferase 4 Gal3st4 498166 NM_001109064 0009058 // biosynthetic process // inferred from electronic annotation 0005624 // membrane fraction // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001733 // galactosylceramide sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0050694 // galactose 3-O-sulfotransferase activity // not recorded 1393512_at AA957880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957880 /DB_XREF=gi:4277770 /DB_XREF=UI-R-E1-fv-g-04-0-UI.s2 /CLONE=UI-R-E1-fv-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.23176.1 /TIER=ConsEnd /STK=2 /UG=Rn.23176 /UG_TITLE=ESTs AA957880 1393513_at AI071445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071445 /DB_XREF=gi:3397660 /DB_XREF=UI-R-C1-ku-c-03-0-UI.s2 /CLONE=UI-R-C1-ku-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.22582.1 /TIER=ConsEnd /STK=2 /UG=Rn.22582 /UG_TITLE=ESTs AI071445 1393514_at AI137070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137070 /DB_XREF=gi:3637847 /DB_XREF=UI-R-C2p-oj-h-02-0-UI.s1 /CLONE=UI-R-C2p-oj-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.38310.3 /TIER=ConsEnd /STK=2 /UG=Rn.38310 /UG_TITLE=ESTs AI137070 1393515_at AI145077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145077 /DB_XREF=gi:3666876 /DB_XREF=UI-R-BT0-pt-g-02-0-UI.s1 /CLONE=UI-R-BT0-pt-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.24005.1 /TIER=ConsEnd /STK=2 /UG=Rn.24005 /UG_TITLE=ESTs AI145077 1393516_at AA892335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892335 /DB_XREF=gi:4132151 /DB_XREF=EST196138 /CLONE=RKIAP21 /FEA=EST /CNT=3 /TID=Rn.22717.1 /TIER=ConsEnd /STK=2 /UG=Rn.22717 /UG_TITLE=ESTs AA892335 1393517_at BE097991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097991 /DB_XREF=gi:8488885 /DB_XREF=UI-R-C4-amc-b-01-0-UI.s1 /CLONE=UI-R-C4-amc-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.49187.1 /TIER=ConsEnd /STK=2 /UG=Rn.49187 /UG_TITLE=ESTs BE097991 1393518_at AW529736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529736 /DB_XREF=gi:7172145 /DB_XREF=UI-R-BU0-amr-f-09-0-UI.s1 /CLONE=UI-R-BU0-amr-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.47294.1 /TIER=ConsEnd /STK=2 /UG=Rn.47294 /UG_TITLE=ESTs, Weakly similar to WYRT whey acidic protein precursor - rat (R.norvegicus) AW529736 WAP four-disulfide core domain 5 Wfdc5 296352 NM_001106538 0005576 // extracellular region // inferred from electronic annotation 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1393519_at AI071607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071607 /DB_XREF=gi:3397822 /DB_XREF=UI-R-C2-mw-b-06-0-UI.s1 /CLONE=UI-R-C2-mw-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.20574.1 /TIER=ConsEnd /STK=2 /UG=Rn.20574 /UG_TITLE=ESTs AI071607 1393520_at AA850272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850272 /DB_XREF=gi:2937812 /DB_XREF=EST193039 /CLONE=ROVAE36 /FEA=EST /CNT=3 /TID=Rn.34414.1 /TIER=ConsEnd /STK=2 /UG=Rn.34414 /UG_TITLE=ESTs AA850272 1393521_at AI232280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232280 /DB_XREF=gi:3816160 /DB_XREF=EST228968 /CLONE=RKIBZ69 /FEA=EST /CNT=3 /TID=Rn.23866.1 /TIER=ConsEnd /STK=2 /UG=Rn.23866 /UG_TITLE=ESTs AI232280 1393522_at AI111601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111601 /DB_XREF=gi:3511328 /DB_XREF=UI-R-C2-nm-d-12-0-UI.s2 /CLONE=UI-R-C2-nm-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.22006.1 /TIER=ConsEnd /STK=2 /UG=Rn.22006 /UG_TITLE=ESTs AI111601 1393523_at AI059075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059075 /DB_XREF=gi:3332852 /DB_XREF=UI-R-C1-ks-g-12-0-UI.s1 /CLONE=UI-R-C1-ks-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.19325.1 /TIER=ConsEnd /STK=2 /UG=Rn.19325 /UG_TITLE=ESTs AI059075 1393524_at AI764585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764585 /DB_XREF=gi:5210520 /DB_XREF=UI-R-Y0-abv-f-12-0-UI.s2 /CLONE=UI-R-Y0-abv-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.21818.1 /TIER=ConsEnd /STK=2 /UG=Rn.21818 /UG_TITLE=ESTs AI764585 1393525_at AI070206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070206 /DB_XREF=gi:3396457 /DB_XREF=UI-R-Y0-lu-b-03-0-UI.s1 /CLONE=UI-R-Y0-lu-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.19688.1 /TIER=ConsEnd /STK=2 /UG=Rn.19688 /UG_TITLE=ESTs AI070206 1393526_at AA900633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900633 /DB_XREF=gi:4233126 /DB_XREF=UI-R-E0-by-d-05-0-UI.s4 /CLONE=UI-R-E0-by-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.22940.1 /TIER=ConsEnd /STK=2 /UG=Rn.22940 /UG_TITLE=ESTs AA900633 1393527_at AI501914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501914 /DB_XREF=gi:4399765 /DB_XREF=UI-R-C0-ir-c-09-0-UI.s1 /CLONE=UI-R-C0-ir-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.19913.2 /TIER=ConsEnd /STK=2 /UG=Rn.19913 /UG_TITLE=ESTs, Moderately similar to T08680 hypothetical protein DKFZp564P0622.1 (H.sapiens) AI501914 1393528_at AI059227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059227 /DB_XREF=gi:3333004 /DB_XREF=UI-R-C1-ld-a-06-0-UI.s1 /CLONE=UI-R-C1-ld-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.7699.2 /TIER=ConsEnd /STK=2 /UG=Rn.7699 /UG_TITLE=ESTs AI059227 1393529_at AI011935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011935 /DB_XREF=gi:3225767 /DB_XREF=EST206386 /CLONE=RPLAQ67 /FEA=EST /CNT=3 /TID=Rn.23437.1 /TIER=ConsEnd /STK=2 /UG=Rn.23437 /UG_TITLE=ESTs AI011935 1393530_at AI044044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044044 /DB_XREF=gi:3290779 /DB_XREF=UI-R-C1-js-d-01-0-UI.s1 /CLONE=UI-R-C1-js-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.18787.1 /TIER=ConsEnd /STK=2 /UG=Rn.18787 /UG_TITLE=ESTs AI044044 1393531_at AA964815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964815 /DB_XREF=gi:4279689 /DB_XREF=UI-R-C0-gx-a-10-0-UI.s1 /CLONE=UI-R-C0-gx-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.23234.1 /TIER=ConsEnd /STK=2 /UG=Rn.23234 /UG_TITLE=ESTs AA964815 1393532_at BG379163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379163 /DB_XREF=gi:13303635 /DB_XREF=UI-R-BT1-bnk-f-02-0-UI.s1 /CLONE=UI-R-BT1-bnk-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.66649.1 /TIER=ConsEnd /STK=2 /UG=Rn.66649 /UG_TITLE=ESTs BG379163 ubiquilin 3 Ubqln3 308905 NM_001107543 1393533_at AI071526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071526 /DB_XREF=gi:3397741 /DB_XREF=UI-R-C1-ky-a-12-0-UI.s2 /CLONE=UI-R-C1-ky-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.18921.1 /TIER=ConsEnd /STK=2 /UG=Rn.18921 /UG_TITLE=ESTs AI071526 1393534_at AI059500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059500 /DB_XREF=gi:3333277 /DB_XREF=UI-R-C1-lg-h-05-0-UI.s1 /CLONE=UI-R-C1-lg-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.22571.1 /TIER=ConsEnd /STK=2 /UG=Rn.22571 /UG_TITLE=ESTs AI059500 1393535_at AI010250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010250 /DB_XREF=gi:3224082 /DB_XREF=EST204701 /CLONE=RLUBV83 /FEA=EST /CNT=3 /TID=Rn.23389.1 /TIER=ConsEnd /STK=2 /UG=Rn.23389 /UG_TITLE=ESTs AI010250 1393536_at AI144734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144734 /DB_XREF=gi:3666533 /DB_XREF=UI-R-BT0-po-d-05-0-UI.s1 /CLONE=UI-R-BT0-po-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.23833.1 /TIER=ConsEnd /STK=2 /UG=Rn.23833 /UG_TITLE=ESTs AI144734 hypothetical protein LOC680590 LOC680590 680590 NR_036618 /// XM_001057907 /// XM_001061653 1393537_at AI060026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060026 /DB_XREF=gi:3333803 /DB_XREF=UI-R-C1-kz-h-02-0-UI.s1 /CLONE=UI-R-C1-kz-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.22525.1 /TIER=ConsEnd /STK=2 /UG=Rn.22525 /UG_TITLE=ESTs AI060026 1393538_at AI044886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044886 /DB_XREF=gi:3291705 /DB_XREF=UI-R-C1-kd-h-12-0-UI.s1 /CLONE=UI-R-C1-kd-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.16051.1 /TIER=ConsEnd /STK=2 /UG=Rn.16051 /UG_TITLE=ESTs AI044886 1393539_at AI044004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044004 /DB_XREF=gi:3290739 /DB_XREF=UI-R-C1-js-h-12-0-UI.s1 /CLONE=UI-R-C1-js-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.21711.1 /TIER=ConsEnd /STK=2 /UG=Rn.21711 /UG_TITLE=ESTs AI044004 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1393540_at AA924346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924346 /DB_XREF=gi:4234486 /DB_XREF=UI-R-A1-dr-b-09-0-UI.s3 /CLONE=UI-R-A1-dr-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.23049.1 /TIER=ConsEnd /STK=2 /UG=Rn.23049 /UG_TITLE=ESTs AA924346 1393541_at AI146150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146150 /DB_XREF=gi:3667949 /DB_XREF=UI-R-BT0-qb-a-09-0-UI.s1 /CLONE=UI-R-BT0-qb-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.24023.1 /TIER=ConsEnd /STK=2 /UG=Rn.24023 /UG_TITLE=ESTs AI146150 1393542_at BF403870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403870 /DB_XREF=gi:11391845 /DB_XREF=UI-R-CA1-bix-n-13-0-UI.s1 /CLONE=UI-R-CA1-bix-n-13-0-UI /FEA=EST /CNT=2 /TID=Rn.63274.1 /TIER=ConsEnd /STK=2 /UG=Rn.63274 /UG_TITLE=ESTs BF403870 1393543_at BF399884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399884 /DB_XREF=gi:11384895 /DB_XREF=UI-R-CA1-bja-a-24-0-UI.s1 /CLONE=UI-R-CA1-bja-a-24-0-UI /FEA=EST /CNT=2 /TID=Rn.59327.1 /TIER=ConsEnd /STK=2 /UG=Rn.59327 /UG_TITLE=ESTs BF399884 zinc finger protein 426-like 2 Zfp426l2 363022 NM_001134585 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393544_at AA859687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859687 /DB_XREF=gi:4230231 /DB_XREF=UI-R-E0-bx-e-08-0-UI.s1 /CLONE=UI-R-E0-bx-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.40565.1 /TIER=ConsEnd /STK=2 /UG=Rn.40565 /UG_TITLE=ESTs AA859687 1393545_at AI043906 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043906 /DB_XREF=gi:3290641 /DB_XREF=UI-R-C0-jk-g-02-0-UI.s1 /CLONE=UI-R-C0-jk-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.18589.1 /TIER=ConsEnd /STK=2 /UG=Rn.18589 /UG_TITLE=ESTs, Weakly similar to KLFB_MOUSE Transforming growth factor-beta-inducible early growth response protein 2 (TGFB-inducible early growth response protein 2) (TIEG-2) (Krueppel-like factor 11) (Fragment) (M.musculus) AI043906 Kruppel-like factor 11 Klf11 313994 NM_001037354 0030097 // hemopoiesis // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1393546_at BF394642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394642 /DB_XREF=gi:11379585 /DB_XREF=UI-R-CA0-bfy-b-08-0-UI.s1 /CLONE=UI-R-CA0-bfy-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.58000.1 /TIER=ConsEnd /STK=2 /UG=Rn.58000 /UG_TITLE=ESTs BF394642 1393547_at BE101549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101549 /DB_XREF=gi:8493647 /DB_XREF=UI-R-BO1-apr-c-05-0-UI.s1 /CLONE=UI-R-BO1-apr-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.50072.1 /TIER=ConsEnd /STK=2 /UG=Rn.50072 /UG_TITLE=ESTs BE101549 ring finger protein 182 Rnf182 498726 NM_001109117 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393548_at AI137584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137584 /DB_XREF=gi:3638361 /DB_XREF=UI-R-C0-hf-a-10-0-UI.s1 /CLONE=UI-R-C0-hf-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.23776.1 /TIER=ConsEnd /STK=2 /UG=Rn.23776 /UG_TITLE=ESTs AI137584 1393549_at BF390163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390163 /DB_XREF=gi:11375007 /DB_XREF=UI-R-CA1-bcl-a-11-0-UI.s1 /CLONE=UI-R-CA1-bcl-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.60803.1 /TIER=ConsEnd /STK=2 /UG=Rn.60803 /UG_TITLE=ESTs BF390163 1393550_at BF564195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564195 /DB_XREF=gi:11673925 /DB_XREF=UI-R-C4-alj-c-09-0-UI.r1 /CLONE=UI-R-C4-alj-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.72862.1 /TIER=ConsEnd /STK=2 /UG=Rn.72862 /UG_TITLE=ESTs BF564195 cAMP responsive element modulator Crem 25620 NM_001110860 /// NM_017334 0006006 // glucose metabolic process // inferred from expression pattern /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0006631 // fatty acid metabolic process // inferred from expression pattern /// 0006687 // glycosphingolipid metabolic process // inferred from electronic annotation /// 0006687 // glycosphingolipid metabolic process // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0019933 // cAMP-mediated signaling // traceable author statement /// 0042752 // regulation of circadian rhythm // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048384 // retinoic acid receptor signaling pathway // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1393551_at AI044529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044529 /DB_XREF=gi:3291390 /DB_XREF=UI-R-C1-kc-d-10-0-UI.s1 /CLONE=UI-R-C1-kc-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.15937.1 /TIER=ConsEnd /STK=2 /UG=Rn.15937 /UG_TITLE=ESTs, Weakly similar to HEAT SHOCK PROTEIN 67B2 (D.melanogaster) AI044529 rCG20339-like LOC100365899 100365899 XM_002724903 1393552_x_at AI717644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717644 /DB_XREF=gi:5034948 /DB_XREF=UI-R-Y0-acq-d-08-0-UI.s1 /CLONE=UI-R-Y0-acq-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.41191.2 /TIER=ConsEnd /STK=1 /UG=Rn.41191 /UG_TITLE=ESTs AI717644 PHD finger protein 14 Phf14 500030 NM_001110492 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393553_at AI059872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059872 /DB_XREF=gi:3333649 /DB_XREF=UI-R-C1-la-b-11-0-UI.s1 /CLONE=UI-R-C1-la-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.19296.1 /TIER=ConsEnd /STK=2 /UG=Rn.19296 /UG_TITLE=ESTs AI059872 1393554_at AI043914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043914 /DB_XREF=gi:3290649 /DB_XREF=UI-R-C0-jk-h-06-0-UI.s1 /CLONE=UI-R-C0-jk-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.17379.1 /TIER=ConsEnd /STK=2 /UG=Rn.17379 /UG_TITLE=ESTs AI043914 similar to hypothetical protein DKFZp761E198 RGD1562657 361709 XM_001073814 /// XM_341994 1393555_at BG153357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG153357 /DB_XREF=gi:12665387 /DB_XREF=nag13b03.x1 /CLONE=IMAGE:4175956 /FEA=EST /CNT=2 /TID=Rn.65638.1 /TIER=ConsEnd /STK=2 /UG=Rn.65638 /UG_TITLE=ESTs, Moderately similar to HS9B RAT HEAT SHOCK PROTEIN HSP 90-BETA (R.norvegicus) BG153357 heat shock protein 90kDa alpha (cytosolic), class B member 1 Hsp90ab1 301252 NM_001004082 0001890 // placenta development // inferred from electronic annotation /// 0001890 // placenta development // not recorded /// 0006457 // protein folding // traceable author statement /// 0006457 // protein folding // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // traceable author statement /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0060334 // regulation of interferon-gamma-mediated signaling pathway // inferred from electronic annotation /// 0060334 // regulation of interferon-gamma-mediated signaling pathway // not recorded /// 0060338 // regulation of type I interferon-mediated signaling pathway // inferred from electronic annotation /// 0060338 // regulation of type I interferon-mediated signaling pathway // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0042470 // melanosome // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1393556_at BE119549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119549 /DB_XREF=gi:8511654 /DB_XREF=UI-R-CA0-bag-a-11-0-UI.s1 /CLONE=UI-R-CA0-bag-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.53103.1 /TIER=ConsEnd /STK=2 /UG=Rn.53103 /UG_TITLE=ESTs BE119549 zinc finger, FYVE domain containing 28 Zfyve28 305454 NM_001107227 0007175 // negative regulation of epidermal growth factor receptor activity // not recorded /// 0042059 // negative regulation of epidermal growth factor receptor signaling pathway // not recorded 0005829 // cytosol // not recorded /// 0031901 // early endosome membrane // not recorded 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0032266 // phosphatidylinositol-3-phosphate binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1393557_at AI176280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176280 /DB_XREF=gi:3726918 /DB_XREF=EST219862 /CLONE=ROVBP50 /FEA=EST /CNT=2 /TID=Rn.13163.2 /TIER=ConsEnd /STK=2 /UG=Rn.13163 /UG_TITLE=ESTs AI176280 1393558_at AI137931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137931 /DB_XREF=gi:3638708 /DB_XREF=UI-R-A1-dt-g-10-0-UI.s1 /CLONE=UI-R-A1-dt-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.23054.1 /TIER=ConsEnd /STK=2 /UG=Rn.23054 /UG_TITLE=ESTs AI137931 Integrin, alpha 6 Itga6 114517 XM_001059353 /// XM_001059408 /// XM_002729169 /// XM_215984 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // inferred from mutant phenotype /// 0016337 // cell-cell adhesion // inferred from mutant phenotype /// 0022409 // positive regulation of cell-cell adhesion // inferred from electronic annotation /// 0022409 // positive regulation of cell-cell adhesion // not recorded /// 0031581 // hemidesmosome assembly // not recorded /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0031668 // cellular response to extracellular stimulus // not recorded /// 0033627 // cell adhesion mediated by integrin // inferred from electronic annotation /// 0033627 // cell adhesion mediated by integrin // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0046847 // filopodium assembly // inferred from electronic annotation /// 0046847 // filopodium assembly // not recorded /// 0050873 // brown fat cell differentiation // inferred from electronic annotation /// 0050873 // brown fat cell differentiation // not recorded /// 0050900 // leukocyte migration // inferred from electronic annotation /// 0050900 // leukocyte migration // not recorded /// 0071407 // cellular response to organic cyclic substance // inferred from expression pattern 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0008305 // integrin complex // inferred from electronic annotation /// 0008305 // integrin complex // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0030175 // filopodium // inferred from direct assay /// 0034676 // alpha6-beta4 integrin complex // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0043236 // laminin binding // inferred from physical interaction 1393559_at AI235210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235210 /DB_XREF=gi:4136063 /DB_XREF=EST231772 /CLONE=ROVCO91 /FEA=EST /CNT=2 /TID=Rn.25308.1 /TIER=ConsEnd /STK=2 /UG=Rn.25308 /UG_TITLE=ESTs AI235210 1393560_at BF416676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416676 /DB_XREF=gi:11404665 /DB_XREF=UI-R-CA0-bku-e-10-0-UI.s1 /CLONE=UI-R-CA0-bku-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.63115.1 /TIER=ConsEnd /STK=2 /UG=Rn.63115 /UG_TITLE=ESTs BF416676 similar to dystonin isoform 1 LOC680875 680875 XM_002729838 0007050 // cell cycle arrest // inferred from electronic annotation 1393561_at BF396511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396511 /DB_XREF=gi:11381485 /DB_XREF=UI-R-BS2-bdz-a-04-0-UI.s1 /CLONE=UI-R-BS2-bdz-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.58482.1 /TIER=ConsEnd /STK=2 /UG=Rn.58482 /UG_TITLE=ESTs BF396511 1393562_at BF564312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564312 /DB_XREF=gi:11674042 /DB_XREF=UI-R-C4-aln-b-05-0-UI.r1 /CLONE=UI-R-C4-aln-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.48326.1 /TIER=ConsEnd /STK=2 /UG=Rn.48326 /UG_TITLE=ESTs BF564312 adaptor-related protein complex 3, mu 1 subunit Ap3m1 171126 NM_133593 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1393563_at BF391914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391914 /DB_XREF=gi:11376770 /DB_XREF=UI-R-CA0-bfh-a-10-0-UI.s1 /CLONE=UI-R-CA0-bfh-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.57684.1 /TIER=ConsEnd /STK=2 /UG=Rn.57684 /UG_TITLE=ESTs, Highly similar to A57535 intrleukin 1 receptor accessory protein precursor - mouse (M.musculus) BF391914 interleukin 1 receptor accessory protein Il1rap 25466 NM_001167840 /// NM_012968 0007165 // signal transduction // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0042094 // interleukin-2 biosynthetic process // not recorded /// 0042094 // interleukin-2 biosynthetic process // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031224 // intrinsic to membrane // inferred from electronic annotation 0004871 // signal transducer activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004908 // interleukin-1 receptor activity // inferred from electronic annotation /// 0004908 // interleukin-1 receptor activity // not recorded /// 0005149 // interleukin-1 receptor binding // traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019966 // interleukin-1 binding // traceable author statement /// 0030674 // protein binding, bridging // traceable author statement 1393564_at BF402371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402371 /DB_XREF=gi:11390346 /DB_XREF=UI-R-CA0-bhn-d-12-0-UI.s1 /CLONE=UI-R-CA0-bhn-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.51701.2 /TIER=ConsEnd /STK=2 /UG=Rn.51701 /UG_TITLE=ESTs, Moderately similar to T00362 hypothetical protein KIAA0675 (H.sapiens) BF402371 DAZ interacting protein 3, zinc finger Dzip3 303963 XM_001058877 /// XM_221487 0000209 // protein polyubiquitination // not recorded 0005737 // cytoplasm // not recorded 0003723 // RNA binding // not recorded /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0031593 // polyubiquitin binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1393565_at BF406306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406306 /DB_XREF=gi:11394281 /DB_XREF=UI-R-CA1-bjf-h-05-0-UI.s1 /CLONE=UI-R-CA1-bjf-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.60927.1 /TIER=ConsEnd /STK=2 /UG=Rn.60927 /UG_TITLE=ESTs BF406306 similar to RIKEN cDNA A030009H04 RGD1563441 497935 NM_001126292 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393566_at BF409676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409676 /DB_XREF=gi:11397651 /DB_XREF=UI-R-CA1-bln-d-09-0-UI.s1 /CLONE=UI-R-CA1-bln-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.61443.1 /TIER=ConsEnd /STK=2 /UG=Rn.61443 /UG_TITLE=ESTs BF409676 similar to transmembrane protein induced by tumor necrosis factor alpha LOC687611 687611 XM_001079386 0016021 // integral to membrane // inferred from electronic annotation 1393567_at BF389164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389164 /DB_XREF=gi:11373992 /DB_XREF=UI-R-BS2-bdl-e-08-0-UI.s1 /CLONE=UI-R-BS2-bdl-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.56893.1 /TIER=ConsEnd /STK=2 /UG=Rn.56893 /UG_TITLE=ESTs, Highly similar to BRD4_HUMAN BROMODOMAIN-CONTAINING PROTEIN 4 (HUNK1 PROTEIN) (H.sapiens) BF389164 bromodomain containing 4 Brd4 362844 NM_001100903 0006468 // protein phosphorylation // not recorded /// 0043388 // positive regulation of DNA binding // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded 1393568_at BF404793 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404793 /DB_XREF=gi:11392768 /DB_XREF=UI-R-CA1-bid-f-11-0-UI.s1 /CLONE=UI-R-CA1-bid-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.59902.1 /TIER=ConsEnd /STK=2 /UG=Rn.59902 /UG_TITLE=ESTs, Moderately similar to T19347 hypothetical protein C17D12.2 - Caenorhabditis elegans (C.elegans) BF404793 CUG triplet repeat, RNA binding protein 1 Cugbp1 362160 NM_001025421 0006376 // mRNA splice site selection // inferred from electronic annotation /// 0006376 // mRNA splice site selection // not recorded /// 0006397 // mRNA processing // inferred from electronic annotation /// 0007286 // spermatid development // inferred from electronic annotation /// 0007286 // spermatid development // not recorded /// 0008380 // RNA splicing // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0043484 // regulation of RNA splicing // not recorded /// 0043484 // regulation of RNA splicing // inferred from sequence or structural similarity 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0031369 // translation initiation factor binding // inferred from electronic annotation /// 0031369 // translation initiation factor binding // not recorded /// 0042835 // BRE binding // not recorded 1393569_at AI058532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058532 /DB_XREF=gi:3332309 /DB_XREF=UI-R-C1-ku-b-11-0-UI.s1 /CLONE=UI-R-C1-ku-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.18901.1 /TIER=ConsEnd /STK=2 /UG=Rn.18901 /UG_TITLE=ESTs AI058532 RNA binding motif protein 18 Rbm18 311902 NM_001107838 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1393570_at AI111566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111566 /DB_XREF=gi:3511293 /DB_XREF=UI-R-C2-nm-a-04-0-UI.s2 /CLONE=UI-R-C2-nm-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.21769.1 /TIER=ConsEnd /STK=2 /UG=Rn.21769 /UG_TITLE=ESTs AI111566 1393571_at AA963158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963158 /DB_XREF=gi:3136650 /DB_XREF=UI-R-E1-gh-a-02-0-UI.s1 /CLONE=UI-R-E1-gh-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.8637.3 /TIER=ConsEnd /STK=2 /UG=Rn.8637 /UG_TITLE=ESTs AA963158 1393572_at AI229129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229129 /DB_XREF=gi:3813016 /DB_XREF=EST225824 /CLONE=RBRDE44 /FEA=EST /CNT=2 /TID=Rn.24437.1 /TIER=ConsEnd /STK=2 /UG=Rn.24437 /UG_TITLE=ESTs AI229129 zinc finger protein 592 Znf592 293038 NM_001106272 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1393573_at AI575628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575628 /DB_XREF=gi:4560004 /DB_XREF=UI-R-Y0-vi-d-01-0-UI.s1 /CLONE=UI-R-Y0-vi-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.19724.1 /TIER=ConsEnd /STK=1 /UG=Rn.19724 /UG_TITLE=ESTs, Weakly similar to CN5A RAT CGMP-SPECIFIC 3,5-CYCLIC PHOSPHODIESTERASE (R.norvegicus) AI575628 phosphodiesterase 6B, cGMP-specific, rod, beta Pde6b 289878 NM_001106024 0007165 // signal transduction // inferred from electronic annotation /// 0009583 // detection of light stimulus // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393574_at AI103347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103347 /DB_XREF=gi:4134160 /DB_XREF=EST212636 /CLONE=REMCA91 /FEA=EST /CNT=3 /TID=Rn.36309.2 /TIER=ConsEnd /STK=1 /UG=Rn.36309 /UG_TITLE=ESTs AI103347 1393575_at AW526013 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526013 /DB_XREF=gi:7168398 /DB_XREF=UI-R-BO1-aiy-c-06-0-UI.s1 /CLONE=UI-R-BO1-aiy-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.46061.1 /TIER=ConsEnd /STK=1 /UG=Rn.46061 /UG_TITLE=ESTs AW526013 1393576_at AA963989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963989 /DB_XREF=gi:4278865 /DB_XREF=UI-R-C0-gs-f-04-0-UI.s1 /CLONE=UI-R-C0-gs-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.32972.1 /TIER=ConsEnd /STK=1 /UG=Rn.32972 /UG_TITLE=ESTs AA963989 1393577_at AI058546 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058546 /DB_XREF=gi:3332323 /DB_XREF=UI-R-C1-ku-f-09-0-UI.s1 /CLONE=UI-R-C1-ku-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.19490.2 /TIER=ConsEnd /STK=1 /UG=Rn.19490 /UG_TITLE=ESTs AI058546 1393578_at AA892301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892301 /DB_XREF=gi:3019180 /DB_XREF=EST196104 /CLONE=RKIAO77 /FEA=EST /CNT=3 /TID=Rn.14748.1 /TIER=ConsEnd /STK=1 /UG=Rn.14748 /UG_TITLE=ESTs AA892301 1393579_at BF406384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406384 /DB_XREF=gi:11394359 /DB_XREF=UI-R-CA1-bjf-f-16-0-UI.s1 /CLONE=UI-R-CA1-bjf-f-16-0-UI /FEA=EST /CNT=3 /TID=Rn.60954.1 /TIER=ConsEnd /STK=1 /UG=Rn.60954 /UG_TITLE=ESTs BF406384 kohjirin Chrdl1 363455 NM_199502 0001503 // ossification // inferred from electronic annotation /// 0001709 // cell fate determination // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from mutant phenotype 0005576 // extracellular region // traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation 1393580_at AW531476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531476 /DB_XREF=gi:7173890 /DB_XREF=UI-R-BO1-aji-d-11-0-UI.s1 /CLONE=UI-R-BO1-aji-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.47721.1 /TIER=ConsEnd /STK=1 /UG=Rn.47721 /UG_TITLE=ESTs AW531476 hypothetical protein LOC691543 LOC691543 691543 NM_001109645 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 1393581_at AW528001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528001 /DB_XREF=gi:7170415 /DB_XREF=UI-R-BT1-akg-e-10-0-UI.s1 /CLONE=UI-R-BT1-akg-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.46733.1 /TIER=ConsEnd /STK=1 /UG=Rn.46733 /UG_TITLE=ESTs AW528001 asp (abnormal spindle) homolog, microcephaly associated (Drosophila) Aspm 289054 NM_001105955 0021873 // forebrain neuroblast division // not recorded /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045769 // negative regulation of asymmetric cell division // not recorded /// 0051661 // maintenance of centrosome location // not recorded 0000922 // spindle pole // not recorded 1393582_at AW529067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529067 /DB_XREF=gi:7171446 /DB_XREF=UI-R-BT1-aka-d-03-0-UI.s1 /CLONE=UI-R-BT1-aka-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.72959.1 /TIER=ConsEnd /STK=1 /UG=Rn.72959 /UG_TITLE=ESTs AW529067 1393583_at BE119096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119096 /DB_XREF=gi:8511201 /DB_XREF=UI-R-CA0-azy-d-12-0-UI.s1 /CLONE=UI-R-CA0-azy-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.53128.1 /TIER=ConsEnd /STK=1 /UG=Rn.53128 /UG_TITLE=ESTs BE119096 Ewing tumor-associated antigen 1 Etaa1 498420 NM_001109094 1393584_at AI045201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045201 /DB_XREF=gi:3292020 /DB_XREF=UI-R-C1-ju-d-09-0-UI.s1 /CLONE=UI-R-C1-ju-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.65498.1 /TIER=ConsEnd /STK=1 /UG=Rn.65498 /UG_TITLE=ESTs AI045201 tumor necrosis factor receptor superfamily, member 21 Tnfrsf21 316256 NM_001108207 0007165 // signal transduction // inferred from electronic annotation /// 0051402 // neuron apoptosis // not recorded 0030424 // axon // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393585_at AI145951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145951 /DB_XREF=gi:3667750 /DB_XREF=UI-R-BT0-qc-d-07-0-UI.s1 /CLONE=UI-R-BT0-qc-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.28679.1 /TIER=ConsEnd /STK=1 /UG=Rn.28679 /UG_TITLE=ESTs AI145951 1393586_at AI101752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101752 /DB_XREF=gi:3706614 /DB_XREF=EST211041 /CLONE=RBRBU61 /FEA=EST /CNT=2 /TID=Rn.43112.1 /TIER=ConsEnd /STK=1 /UG=Rn.43112 /UG_TITLE=ESTs, Weakly similar to NEO1_RAT NEOGENIN PRECURSOR (R.norvegicus) AI101752 immunoglobulin superfamily, DCC subclass, member 4 Igdcc4 363081 NM_001108767 1393587_a_at AI578061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578061 /DB_XREF=gi:4562437 /DB_XREF=UI-R-C3-tk-a-08-0-UI.s2 /CLONE=UI-R-C3-tk-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.37930.2 /TIER=ConsEnd /STK=1 /UG=Rn.37930 /UG_TITLE=ESTs AI578061 family with sequence similarity 188, member A Fam188a 291320 NM_001106122 0005509 // calcium ion binding // inferred from electronic annotation 1393588_at AA964346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964346 /DB_XREF=gi:4279221 /DB_XREF=UI-R-C0-gw-e-10-0-UI.s1 /CLONE=UI-R-C0-gw-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.11783.1 /TIER=ConsEnd /STK=1 /UG=Rn.11783 /UG_TITLE=ESTs, Weakly similar to CLD3 RAT CLAUDIN-3 (R.norvegicus) AA964346 claudin 14 Cldn14 304073 NM_001013429 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 1393589_at AW524979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524979 /DB_XREF=gi:7167364 /DB_XREF=UI-R-BJ0p-aiv-e-05-0-UI.s1 /CLONE=UI-R-BJ0p-aiv-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.76271.1 /TIER=ConsEnd /STK=1 /UG=Rn.76271 /UG_TITLE=ESTs AW524979 kelch-like 4 (Drosophila) Klhl4 317196 NM_001108244 0005515 // protein binding // inferred from electronic annotation 1393590_at AW524253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524253 /DB_XREF=gi:7166638 /DB_XREF=UI-R-BO0-aig-b-09-0-UI.s1 /CLONE=UI-R-BO0-aig-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.45809.1 /TIER=ConsEnd /STK=1 /UG=Rn.45809 /UG_TITLE=ESTs AW524253 collagen, type XXIII, alpha 1 Col23a1 353303 NM_181636 0070207 // protein homotrimerization // inferred from direct assay 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008201 // heparin binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay 1393591_at AW527025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527025 /DB_XREF=gi:7169439 /DB_XREF=UI-R-BO1-ajg-f-10-0-UI.s1 /CLONE=UI-R-BO1-ajg-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.46400.1 /TIER=ConsEnd /STK=1 /UG=Rn.46400 /UG_TITLE=ESTs AW527025 similar to tumor necrosis factor receptor superfamily, member 19 RGD1564996 290300 NM_001044229 0001942 // hair follicle development // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1393592_at AA998087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998087 /DB_XREF=gi:4287424 /DB_XREF=UI-R-C0-id-h-04-0-UI.s1 /CLONE=UI-R-C0-id-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.12871.1 /TIER=ConsEnd /STK=1 /UG=Rn.12871 /UG_TITLE=ESTs AA998087 heparan sulfate (glucosamine) 3-O-sulfotransferase 5 Hs3st5 294449 NM_001106392 0006477 // protein sulfation // not recorded /// 0015015 // heparan sulfate proteoglycan biosynthetic process, enzymatic modification // not recorded /// 0046596 // regulation of virion penetration into host cell // not recorded /// 0050819 // negative regulation of coagulation // not recorded 0005515 // protein binding // not recorded /// 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0008467 // [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation 1393593_at AA874856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA874856 /DB_XREF=gi:4230739 /DB_XREF=UI-R-E0-cg-h-11-0-UI.s1 /CLONE=UI-R-E0-cg-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.3146.1 /TIER=ConsEnd /STK=1 /UG=Rn.3146 /UG_TITLE=ESTs, Highly similar to T00268 hypothetical protein KIAA0597 (H.sapiens) AA874856 membrane-associated ring finger (C3HC4) 6 March6 294862 XM_001065952 /// XM_215517 0008270 // zinc ion binding // inferred from electronic annotation 1393594_at AI030196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030196 /DB_XREF=gi:3248022 /DB_XREF=UI-R-C0-it-g-09-0-UI.s1 /CLONE=UI-R-C0-it-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.43225.1 /TIER=ConsEnd /STK=1 /UG=Rn.43225 /UG_TITLE=ESTs AI030196 1393595_at BI289182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289182 /DB_XREF=gi:14946494 /DB_XREF=UI-R-DK0-cfm-g-05-0-UI.s1 /CLONE=UI-R-DK0-cfm-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.79005.1 /TIER=ConsEnd /STK=1 /UG=Rn.79005 /UG_TITLE=ESTs BI289182 UTP6, small subunit (SSU) processome component, homolog (yeast) Utp6 360574 XM_001080950 /// XM_002724525 /// XM_340853 0006396 // RNA processing // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393596_at BF390064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390064 /DB_XREF=gi:11374906 /DB_XREF=UI-R-BS2-bdr-h-01-0-UI.s1 /CLONE=UI-R-BS2-bdr-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.56990.1 /TIER=ConsEnd /STK=1 /UG=Rn.56990 /UG_TITLE=ESTs, Highly similar to ATRX MOUSE TRANSCRIPTIONAL REGULATOR ATRX (M.musculus) BF390064 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation 0000228 // nuclear chromosome // inferred from electronic annotation /// 0000792 // heterochromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0070087 // chromo shadow domain binding // inferred from electronic annotation 1393597_at AW532220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532220 /DB_XREF=gi:7174634 /DB_XREF=UI-R-C4-alj-h-02-0-UI.s1 /CLONE=UI-R-C4-alj-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.47906.1 /TIER=ConsEnd /STK=1 /UG=Rn.47906 /UG_TITLE=ESTs AW532220 1393598_at AA964510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964510 /DB_XREF=gi:4279384 /DB_XREF=UI-R-C0-gv-f-03-0-UI.s1 /CLONE=UI-R-C0-gv-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.11824.1 /TIER=ConsEnd /STK=1 /UG=Rn.11824 /UG_TITLE=ESTs, Weakly similar to CGB1 RAT G2MITOTIC-SPECIFIC CYCLIN B1 (R.norvegicus) AA964510 cyclin A1 Ccna1 295052 NM_001011949 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0071445 // cellular response to protein stimulus // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393599_at AA926241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926241 /DB_XREF=gi:4237432 /DB_XREF=UI-R-A1-eq-d-08-0-UI.s1 /CLONE=UI-R-A1-eq-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.15690.1 /TIER=ConsEnd /STK=1 /UG=Rn.15690 /UG_TITLE=ESTs, Weakly similar to T-CELL SURFACE GLYCOPROTEIN LY-49E (M.musculus) AA926241 similar to killer cell lectin-like receptor, subfamily A, member 17 LOC690020 690020 XM_001072955 /// XM_002726437 0005488 // binding // inferred from electronic annotation 1393600_at AA817969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817969 /DB_XREF=gi:4198492 /DB_XREF=UI-R-A0-ag-g-10-0-UI.s1 /CLONE=UI-R-A0-ag-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.16421.1 /TIER=ConsEnd /STK=1 /UG=Rn.16421 /UG_TITLE=ESTs AA817969 1393601_at BI289448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289448 /DB_XREF=gi:14947030 /DB_XREF=UI-R-DK0-cfh-b-08-0-UI.s1 /CLONE=UI-R-DK0-cfh-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.79013.1 /TIER=ConsEnd /STK=1 /UG=Rn.79013 /UG_TITLE=ESTs BI289448 tigger transposable element derived 5 Tigd5 300034 NM_001126268 0045449 // regulation of transcription // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation 1393602_at AW529468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529468 /DB_XREF=gi:7171882 /DB_XREF=UI-R-BT1-akk-f-06-0-UI.s1 /CLONE=UI-R-BT1-akk-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.47209.1 /TIER=ConsEnd /STK=1 /UG=Rn.47209 /UG_TITLE=ESTs AW529468 1393603_at AA998531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998531 /DB_XREF=gi:4290504 /DB_XREF=UI-R-C0-ic-d-10-0-UI.s1 /CLONE=UI-R-C0-ic-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.33146.1 /TIER=ConsEnd /STK=1 /UG=Rn.33146 /UG_TITLE=ESTs, Moderately similar to CRAM MOUSE CATHELIN-RELATED ANTIMICROBIAL PEPTIDE PRECURSOR (M.musculus) AA998531 cathelicidin antimicrobial peptide Camp 316010 NM_001100724 0001934 // positive regulation of protein phosphorylation // inferred from mutant phenotype /// 0006952 // defense response // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0044130 // negative regulation of growth of symbiont in host // inferred from electronic annotation /// 0044130 // negative regulation of growth of symbiont in host // not recorded /// 0044140 // negative regulation of growth of symbiont on or near host surface // inferred from electronic annotation /// 0044140 // negative regulation of growth of symbiont on or near host surface // not recorded /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0050829 // defense response to Gram-negative bacterium // inferred from mutant phenotype /// 0050829 // defense response to Gram-negative bacterium // not recorded /// 0050829 // defense response to Gram-negative bacterium // inferred from electronic annotation /// 0050830 // defense response to Gram-positive bacterium // inferred from mutant phenotype /// 0050830 // defense response to Gram-positive bacterium // not recorded /// 0050830 // defense response to Gram-positive bacterium // inferred from electronic annotation /// 0051873 // killing by host of symbiont cells // inferred from electronic annotation /// 0051873 // killing by host of symbiont cells // not recorded /// 0071222 // cellular response to lipopolysaccharide // inferred from expression pattern /// 0071224 // cellular response to peptidoglycan // inferred from expression pattern /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071354 // cellular response to interleukin-6 // inferred from expression pattern /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0042581 // specific granule // inferred from electronic annotation /// 0042581 // specific granule // not recorded /// 0042995 // cell projection // inferred from direct assay 1393604_at BE106064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106064 /DB_XREF=gi:8498166 /DB_XREF=UI-R-BO1-ask-e-03-0-UI.s1 /CLONE=UI-R-BO1-ask-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.49184.1 /TIER=ConsEnd /STK=1 /UG=Rn.49184 /UG_TITLE=ESTs, Weakly similar to T27401 hypothetical protein Y75B8A.14 - Caenorhabditis elegans (C.elegans) BE106064 GPN-loop GTPase 3 Gpn3 360810 NM_201991 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1393605_at AI145306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145306 /DB_XREF=gi:3667105 /DB_XREF=UI-R-BT0-pq-e-02-0-UI.s1 /CLONE=UI-R-BT0-pq-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.27881.1 /TIER=ConsEnd /STK=1 /UG=Rn.27881 /UG_TITLE=ESTs AI145306 vav 3 guanine nucleotide exchange factor Vav3 295378 NM_001191714 /// XM_001072341 /// XM_227600 0006906 // vesicle fusion // not recorded /// 0006915 // apoptosis // not recorded /// 0007229 // integrin-mediated signaling pathway // not recorded /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0016477 // cell migration // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030031 // cell projection assembly // not recorded /// 0030032 // lamellipodium assembly // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0043087 // regulation of GTPase activity // not recorded /// 0043552 // positive regulation of phosphoinositide 3-kinase activity // not recorded /// 0045785 // positive regulation of cell adhesion // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // not recorded /// 0005154 // epidermal growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030676 // Rac guanyl-nucleotide exchange factor activity // not recorded 1393606_at AI137411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137411 /DB_XREF=gi:3638188 /DB_XREF=UI-R-C2p-ok-b-08-0-UI.s1 /CLONE=UI-R-C2p-ok-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.53939.1 /TIER=ConsEnd /STK=1 /UG=Rn.53939 /UG_TITLE=ESTs AI137411 glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) Gpcpd1 362219 NM_198779 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006071 // glycerol metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0008889 // glycerophosphodiester phosphodiesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation 1393607_at AI146247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146247 /DB_XREF=gi:3668046 /DB_XREF=UI-R-BT0-qh-e-12-0-UI.s1 /CLONE=UI-R-BT0-qh-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.28783.1 /TIER=ConsEnd /STK=1 /UG=Rn.28783 /UG_TITLE=ESTs AI146247 1393608_at AW522185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522185 /DB_XREF=gi:7164570 /DB_XREF=UI-R-BO0-agm-e-03-0-UI.s1 /CLONE=UI-R-BO0-agm-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.76361.1 /TIER=ConsEnd /STK=1 /UG=Rn.76361 /UG_TITLE=ESTs AW522185 1393609_at AA964480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964480 /DB_XREF=gi:4279354 /DB_XREF=UI-R-E1-go-g-05-0-UI.s1 /CLONE=UI-R-E1-go-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.72743.1 /TIER=ConsEnd /STK=1 /UG=Rn.72743 /UG_TITLE=ESTs AA964480 1393610_at AI137173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137173 /DB_XREF=gi:3637950 /DB_XREF=UI-R-C2p-oh-e-09-0-UI.s1 /CLONE=UI-R-C2p-oh-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.27338.1 /TIER=ConsEnd /STK=1 /UG=Rn.27338 /UG_TITLE=ESTs AI137173 family with sequence similarity 76, member A Fam76a 362618 NM_001108686 1393611_at AA964538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964538 /DB_XREF=gi:4279412 /DB_XREF=UI-R-C0-gv-h-11-0-UI.s1 /CLONE=UI-R-C0-gv-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.64464.1 /TIER=ConsEnd /STK=1 /UG=Rn.64464 /UG_TITLE=ESTs AA964538 helicase, POLQ-like /// similar to DNA helicase HEL308 Helq /// LOC289471 289471 /// 360912 NM_001014134 /// XM_001060858 /// XM_214002 /// XM_341186 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation 1393612_a_at AI059270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059270 /DB_XREF=gi:3333047 /DB_XREF=UI-R-C1-lb-b-04-0-UI.s1 /CLONE=UI-R-C1-lb-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.19114.1 /TIER=ConsEnd /STK=1 /UG=Rn.19114 /UG_TITLE=ESTs AI059270 DEP domain containing 7 Depdc7 295971 NM_001029916 0023034 // intracellular signaling pathway // inferred from electronic annotation 1393613_at BE117871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117871 /DB_XREF=gi:8509976 /DB_XREF=UI-R-BS1-azm-a-03-0-UI.s1 /CLONE=UI-R-BS1-azm-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.52915.1 /TIER=ConsEnd /STK=1 /UG=Rn.52915 /UG_TITLE=ESTs BE117871 1393614_at AI060247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060247 /DB_XREF=gi:3334024 /DB_XREF=UI-R-C1-ll-b-10-0-UI.s1 /CLONE=UI-R-C1-ll-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.19404.1 /TIER=ConsEnd /STK=1 /UG=Rn.19404 /UG_TITLE=ESTs AI060247 N-terminal EF-hand calcium binding protein 3 Necab3 311562 NM_001098724 0017000 // antibiotic biosynthetic process // inferred from electronic annotation /// 0019538 // protein metabolic process // not recorded /// 0042984 // regulation of amyloid precursor protein biosynthetic process // not recorded 0000137 // Golgi cis cisterna // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1393615_at AI059603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059603 /DB_XREF=gi:3333380 /DB_XREF=UI-R-C1-lj-g-08-0-UI.s1 /CLONE=UI-R-C1-lj-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.19226.1 /TIER=ConsEnd /STK=1 /UG=Rn.19226 /UG_TITLE=ESTs AI059603 1393616_at AI059202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059202 /DB_XREF=gi:3332979 /DB_XREF=UI-R-C1-lb-c-11-0-UI.s1 /CLONE=UI-R-C1-lb-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.21050.1 /TIER=ConsEnd /STK=1 /UG=Rn.21050 /UG_TITLE=ESTs AI059202 1393617_at AW530317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530317 /DB_XREF=gi:7172731 /DB_XREF=UI-R-BU0-amv-b-10-0-UI.s1 /CLONE=UI-R-BU0-amv-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.47425.1 /TIER=ConsEnd /STK=1 /UG=Rn.47425 /UG_TITLE=ESTs AW530317 1393618_at AI137986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137986 /DB_XREF=gi:3638763 /DB_XREF=UI-R-C2p-oi-a-07-0-UI.s1 /CLONE=UI-R-C2p-oi-a-07-0-UI /FEA=EST /CNT=2 /TID=Rn.65504.1 /TIER=ConsEnd /STK=1 /UG=Rn.65504 /UG_TITLE=ESTs, Moderately similar to TIG2_HUMAN RETINOIC ACID RECEPTOR RESPONDER PROTEIN 2 PRECURSOR (H.sapiens) AI137986 leucine rich repeat containing 61 Lrrc61 500111 NM_001109231 0005515 // protein binding // inferred from electronic annotation 1393619_at AI045762 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045762 /DB_XREF=gi:3292581 /DB_XREF=UI-R-C1-kl-c-05-0-UI.s1 /CLONE=UI-R-C1-kl-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.16306.2 /TIER=ConsEnd /STK=1 /UG=Rn.16306 /UG_TITLE=ESTs AI045762 CCR4-NOT transcription complex, subunit 6-like Cnot6l 360917 NM_001108355 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393620_at AI113325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113325 /DB_XREF=gi:3513274 /DB_XREF=UI-R-C2p-nr-f-10-0-UI.s1 /CLONE=UI-R-C2p-nr-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.26994.1 /TIER=ConsEnd /STK=1 /UG=Rn.26994 /UG_TITLE=ESTs AI113325 sestrin 3 Sesn3 315427 NM_001108125 0007050 // cell cycle arrest // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1393621_at AA956405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956405 /DB_XREF=gi:4238879 /DB_XREF=UI-R-E1-fj-e-04-0-UI.s1 /CLONE=UI-R-E1-fj-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.21482.1 /TIER=ConsEnd /STK=1 /UG=Rn.21482 /UG_TITLE=ESTs AA956405 vitamin K epoxide reductase complex, subunit 1-like 1 Vkorc1l1 399684 NM_203338 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1393622_at BF567808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567808 /DB_XREF=gi:11677538 /DB_XREF=UI-R-BO0-ahm-e-07-0-UI.r1 /CLONE=UI-R-BO0-ahm-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.73010.1 /TIER=ConsEnd /STK=1 /UG=Rn.73010 /UG_TITLE=ESTs BF567808 1393623_at AI502247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502247 /DB_XREF=gi:4400098 /DB_XREF=UI-R-C1-kd-f-07-0-UI.s1 /CLONE=UI-R-C1-kd-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.16043.1 /TIER=ConsEnd /STK=1 /UG=Rn.16043 /UG_TITLE=ESTs AI502247 1393624_at AA925062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925062 /DB_XREF=gi:4236253 /DB_XREF=UI-R-A1-en-f-10-0-UI.s1 /CLONE=UI-R-A1-en-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.32645.1 /TIER=ConsEnd /STK=1 /UG=Rn.32645 /UG_TITLE=ESTs AA925062 1393625_at AA998540 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998540 /DB_XREF=gi:4290560 /DB_XREF=UI-R-C0-ic-f-08-0-UI.s1 /CLONE=UI-R-C0-ic-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.13105.1 /TIER=ConsEnd /STK=1 /UG=Rn.13105 /UG_TITLE=ESTs AA998540 intersectin 2 Itsn2 313934 XM_001067254 /// XM_002730131 /// XM_002730132 /// XM_233945 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393626_at BF562507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562507 /DB_XREF=gi:11672195 /DB_XREF=UI-R-BU0-ang-f-05-0-UI.r1 /CLONE=UI-R-BU0-ang-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.48031.1 /TIER=ConsEnd /STK=1 /UG=Rn.48031 /UG_TITLE=ESTs BF562507 sortilin-related receptor, LDLR class A repeats-containing Sorl1 300652 NM_053519 /// XM_001065506 /// XM_217115 0008283 // cell proliferation // inferred from expression pattern /// 0016477 // cell migration // inferred from mutant phenotype 0005771 // multivesicular body // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay 0030169 // low-density lipoprotein binding // not recorded 1393627_at AA957929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957929 /DB_XREF=gi:4277819 /DB_XREF=UI-R-E1-fv-d-06-0-UI.s1 /CLONE=UI-R-E1-fv-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.9447.1 /TIER=ConsEnd /STK=1 /UG=Rn.9447 /UG_TITLE=ESTs AA957929 ovary-specific acidic protein Osap 689931 NM_001109556 1393628_at AI453910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI453910 /DB_XREF=gi:4290029 /DB_XREF=UI-R-BT0-pu-e-04-0-UI.s1 /CLONE=UI-R-BT0-pu-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.34547.1 /TIER=ConsEnd /STK=1 /UG=Rn.34547 /UG_TITLE=ESTs AI453910 testis specific, 13 Tsga13 688848 NM_001107851 1393629_at AI501027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501027 /DB_XREF=gi:4398878 /DB_XREF=UI-R-C2p-rs-e-03-0-UI.s1 /CLONE=UI-R-C2p-rs-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.35243.1 /TIER=ConsEnd /STK=1 /UG=Rn.35243 /UG_TITLE=ESTs AI501027 H2.0-like homeobox Hlx 364069 NM_001077674 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045627 // positive regulation of T-helper 1 cell differentiation // inferred from electronic annotation /// 0045627 // positive regulation of T-helper 1 cell differentiation // not recorded /// 0045629 // negative regulation of T-helper 2 cell differentiation // inferred from electronic annotation /// 0045629 // negative regulation of T-helper 2 cell differentiation // not recorded /// 0046622 // positive regulation of organ growth // inferred from electronic annotation /// 0046622 // positive regulation of organ growth // not recorded /// 0048484 // enteric nervous system development // inferred from electronic annotation /// 0048484 // enteric nervous system development // not recorded /// 0048513 // organ development // not recorded /// 0048513 // organ development // inferred from electronic annotation /// 0048557 // embryonic digestive tract morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1393630_at AI576018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576018 /DB_XREF=gi:4560394 /DB_XREF=UI-R-G0-ur-g-12-0-UI.s2 /CLONE=UI-R-G0-ur-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.72474.1 /TIER=ConsEnd /STK=1 /UG=Rn.72474 /UG_TITLE=ESTs AI576018 similar to ring finger protein 157 LOC688272 688272 XM_001081716 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1393631_at AW527492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527492 /DB_XREF=gi:7169906 /DB_XREF=UI-R-BO1-ajt-h-10-0-UI.s1 /CLONE=UI-R-BO1-ajt-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.76325.1 /TIER=ConsEnd /STK=1 /UG=Rn.76325 /UG_TITLE=ESTs AW527492 1393632_at AI501709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501709 /DB_XREF=gi:4399560 /DB_XREF=UI-R-C2p-se-a-12-0-UI.s1 /CLONE=UI-R-C2p-se-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.35545.1 /TIER=ConsEnd /STK=1 /UG=Rn.35545 /UG_TITLE=ESTs AI501709 C1q and tumor necrosis factor related protein 7 C1qtnf7 305423 NM_001107221 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 1393633_at AI071826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071826 /DB_XREF=gi:3398041 /DB_XREF=UI-R-C2-nh-c-06-0-UI.s1 /CLONE=UI-R-C2-nh-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.21998.1 /TIER=ConsEnd /STK=1 /UG=Rn.21998 /UG_TITLE=ESTs AI071826 similar to Tumor protein p53 inducible protein 5 RGD1560565 499287 XM_001062059 /// XM_574586 1393634_at AW530086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530086 /DB_XREF=gi:7172500 /DB_XREF=UI-R-C4-ald-d-08-0-UI.s1 /CLONE=UI-R-C4-ald-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.72851.1 /TIER=ConsEnd /STK=1 /UG=Rn.72851 /UG_TITLE=ESTs, Moderately similar to NRG4_MOUSE PRO-NEUREGULIN-4, SHORT ISOFORM (PRO-NRG4) (CONTAINS: NEUREGULIN-4 (NRG-4)) (M.musculus) AW530086 neuregulin 4 Nrg4 690919 NM_001191109 /// XM_001076144 /// XM_002727037 0005625 // soluble fraction // inferred from direct assay 1393635_x_at AI230430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230430 /DB_XREF=gi:3814317 /DB_XREF=EST227125 /CLONE=REMCW42 /FEA=EST /CNT=2 /TID=Rn.9172.2 /TIER=ConsEnd /STK=1 /UG=Rn.9172 /UG_TITLE=ESTs AI230430 tubulin, beta 4 Tubb4 29213 NM_080882 0007017 // microtubule-based process // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1393636_at AW533462 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533462 /DB_XREF=gi:7175876 /DB_XREF=UI-R-BU0-ani-b-11-0-UI.s1 /CLONE=UI-R-BU0-ani-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.48124.1 /TIER=ConsEnd /STK=1 /UG=Rn.48124 /UG_TITLE=ESTs AW533462 1393637_at BF553039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF553039 /DB_XREF=gi:11662769 /DB_XREF=UI-R-C2-nh-c-08-0-UI.r1 /CLONE=UI-R-C2-nh-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.21999.3 /TIER=ConsEnd /STK=1 /UG=Rn.21999 /UG_TITLE=ESTs, Weakly similar to S44843 K06H7.3 protein - Caenorhabditis elegans (C.elegans) BF553039 galactosidase, beta 1-like Glb1l 301525 NM_001127529 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation 1393638_at AI549199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549199 /DB_XREF=gi:4466687 /DB_XREF=UI-R-C3-ts-g-07-0-UI.s1 /CLONE=UI-R-C3-ts-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.41849.1 /TIER=ConsEnd /STK=1 /UG=Rn.41849 /UG_TITLE=ESTs AI549199 Prostaglandin E receptor 4 Ptger4 84023 NM_032076 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0030278 // regulation of ossification // inferred from electronic annotation /// 0030278 // regulation of ossification // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004955 // prostaglandin receptor activity // inferred from electronic annotation /// 0004957 // prostaglandin E receptor activity // inferred from electronic annotation 1393639_at AI044576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044576 /DB_XREF=gi:3291437 /DB_XREF=UI-R-C1-jw-e-04-0-UI.s1 /CLONE=UI-R-C1-jw-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.20775.1 /TIER=ConsEnd /STK=1 /UG=Rn.20775 /UG_TITLE=ESTs, Highly similar to A59297 myosin X - mouse (M.musculus) AI044576 myosin X Myo10 310178 NM_001107657 0007165 // signal transduction // inferred from electronic annotation 0005856 // cytoskeleton // inferred from electronic annotation /// 0016459 // myosin complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1393640_at BF542956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542956 /DB_XREF=gi:11634021 /DB_XREF=UI-R-Y0-abg-h-05-0-UI.r1 /CLONE=UI-R-Y0-abg-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.40663.1 /TIER=ConsEnd /STK=1 /UG=Rn.40663 /UG_TITLE=ESTs BF542956 1393641_at AA925583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925583 /DB_XREF=gi:4236774 /DB_XREF=UI-R-A1-er-g-05-0-UI.s1 /CLONE=UI-R-A1-er-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.32684.1 /TIER=ConsEnd /STK=1 /UG=Rn.32684 /UG_TITLE=ESTs AA925583 B-cell linker Blnk 499356 NM_001025767 0023034 // intracellular signaling pathway // not recorded /// 0042113 // B cell activation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005070 // SH3/SH2 adaptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393642_at AI137139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137139 /DB_XREF=gi:3637916 /DB_XREF=UI-R-C2p-oe-g-09-0-UI.s1 /CLONE=UI-R-C2p-oe-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.63985.1 /TIER=ConsEnd /STK=1 /UG=Rn.63985 /UG_TITLE=ESTs AI137139 Golgi-localized protein Golsyn 500865 XM_001064007 /// XM_576264 1393643_at AI112962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112962 /DB_XREF=gi:3512911 /DB_XREF=UI-R-C0-gr-d-04-0-UI.s1 /CLONE=UI-R-C0-gr-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.24487.2 /TIER=ConsEnd /STK=1 /UG=Rn.24487 /UG_TITLE=ESTs AI112962 reticulocalbin 1, EF-hand calcium binding domain Rcn1 362182 NM_001108586 0005509 // calcium ion binding // inferred from electronic annotation 1393644_at BI278967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278967 /DB_XREF=gi:14926329 /DB_XREF=UI-R-DB0-byt-c-10-0-UI.s1 /CLONE=UI-R-DB0-byt-c-10-0-UI /FEA=EST /CNT=1 /TID=Rn.77874.1 /TIER=ConsEnd /STK=1 /UG=Rn.77874 /UG_TITLE=EST, Weakly similar to RS4_HUMAN 40S RIBOSOMAL PROTEIN S4, X ISOFORM (R.norvegicus) BI278967 1393645_at BI288003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288003 /DB_XREF=gi:14944158 /DB_XREF=UI-R-CX0s-ccw-h-03-0-UI.s1 /CLONE=UI-R-CX0s-ccw-h-03-0-UI /FEA=EST /CNT=1 /TID=Rn.78836.1 /TIER=ConsEnd /STK=1 /UG=Rn.78836 /UG_TITLE=EST, Weakly similar to NECD MOUSE NECDIN (M.musculus) BI288003 melanoma antigen family B, 16 Mageb16 317274 NM_001025013 1393646_at BI289609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289609 /DB_XREF=gi:14947358 /DB_XREF=UI-R-DK0-cfi-a-06-0-UI.s1 /CLONE=UI-R-DK0-cfi-a-06-0-UI /FEA=EST /CNT=1 /TID=Rn.79056.1 /TIER=ConsEnd /STK=1 /UG=Rn.79056 /UG_TITLE=EST BI289609 developmental pluripotency-associated 3 Dppa3 297576 NM_001047864 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 1393647_at BI285581 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285581 /DB_XREF=gi:14939384 /DB_XREF=UI-R-CW0s-ccb-g-11-0-UI.s1 /CLONE=UI-R-CW0s-ccb-g-11-0-UI /FEA=EST /CNT=1 /TID=Rn.78586.1 /TIER=ConsEnd /STK=1 /UG=Rn.78586 /UG_TITLE=EST, Highly similar to HAT1_HUMAN HISTONE ACETYLTRANSFERASE TYPE B CATALYTIC SUBUNIT (H.sapiens) BI285581 histone acetyltransferase 1 Hat1 296501 NM_001009657 0006348 // chromatin silencing at telomere // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from expression pattern /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016573 // histone acetylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1393648_at BM389848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389848 /DB_XREF=gi:18189901 /DB_XREF=UI-R-CN1-cjp-p-03-0-UI.s1 /CLONE=UI-R-CN1-cjp-p-03-0-UI /FEA=EST /CNT=1 /TID=Rn.82325.1 /TIER=ConsEnd /STK=1 /UG=Rn.82325 /UG_TITLE=EST BM389848 1393649_at BE108758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108758 /DB_XREF=gi:8500863 /DB_XREF=UI-R-BS1-ayy-b-04-0-UI.s1 /CLONE=UI-R-BS1-ayy-b-04-0-UI /FEA=EST /CNT=1 /TID=Rn.51611.1 /TIER=ConsEnd /STK=1 /UG=Rn.51611 /UG_TITLE=EST BE108758 1393650_at BI289506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289506 /DB_XREF=gi:14947149 /DB_XREF=UI-R-DK0-cfh-h-04-0-UI.s1 /CLONE=UI-R-DK0-cfh-h-04-0-UI /FEA=EST /CNT=1 /TID=Rn.79047.1 /TIER=ConsEnd /STK=1 /UG=Rn.79047 /UG_TITLE=EST BI289506 1393651_at BM392211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392211 /DB_XREF=gi:18192264 /DB_XREF=UI-R-DO1-ckp-b-07-0-UI.s1 /CLONE=UI-R-DO1-ckp-b-07-0-UI /FEA=EST /CNT=1 /TID=Rn.82675.1 /TIER=ConsEnd /STK=1 /UG=Rn.82675 /UG_TITLE=EST BM392211 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10) Galnt10 170501 NM_130742 0006493 // protein O-linked glycosylation // inferred from electronic annotation /// 0006493 // protein O-linked glycosylation // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // not recorded /// 0005529 // sugar binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393652_at BF398438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398438 /DB_XREF=gi:11383428 /DB_XREF=UI-R-BS2-beo-h-03-0-UI.s1 /CLONE=UI-R-BS2-beo-h-03-0-UI /FEA=EST /CNT=1 /TID=Rn.59075.1 /TIER=ConsEnd /STK=1 /UG=Rn.59075 /UG_TITLE=EST BF398438 zinc finger and BTB domain containing 1 Zbtb1 314246 NM_001004444 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393653_at BM384831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384831 /DB_XREF=gi:18184884 /DB_XREF=UI-R-DY0-ckl-m-02-0-UI.s1 /CLONE=UI-R-DY0-ckl-m-02-0-UI /FEA=EST /CNT=1 /TID=Rn.81480.1 /TIER=ConsEnd /STK=1 /UG=Rn.81480 /UG_TITLE=EST BM384831 1393654_at BM391891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391891 /DB_XREF=gi:18191944 /DB_XREF=UI-R-DO1-cmk-p-08-0-UI.s1 /CLONE=UI-R-DO1-cmk-p-08-0-UI /FEA=EST /CNT=1 /TID=Rn.82655.1 /TIER=ConsEnd /STK=1 /UG=Rn.82655 /UG_TITLE=EST BM391891 nei endonuclease VIII-like 1 (E. coli) Neil1 367090 NM_001025754 0006281 // DNA repair // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006284 // base-excision repair // inferred from electronic annotation /// 0006284 // base-excision repair // not recorded /// 0006289 // nucleotide-excision repair // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0032074 // negative regulation of nuclease activity // inferred from electronic annotation /// 0032074 // negative regulation of nuclease activity // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003906 // DNA-(apurinic or apyrimidinic site) lyase activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // not recorded /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0016799 // hydrolase activity, hydrolyzing N-glycosyl compounds // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016829 // lyase activity // not recorded /// 0019104 // DNA N-glycosylase activity // inferred from electronic annotation /// 0019104 // DNA N-glycosylase activity // not recorded 1393655_at BF397746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397746 /DB_XREF=gi:11382730 /DB_XREF=UI-R-BS2-bee-b-05-0-UI.s1 /CLONE=UI-R-BS2-bee-b-05-0-UI /FEA=EST /CNT=1 /TID=Rn.70817.1 /TIER=ConsEnd /STK=1 /UG=Rn.70817 /UG_TITLE=EST, Weakly similar to ATRX MOUSE TRANSCRIPTIONAL REGULATOR ATRX (M.musculus) BF397746 RAD54 like (S. cerevisiae) Rad54l 298429 NM_001134960 0000724 // double-strand break repair via homologous recombination // inferred from electronic annotation /// 0006302 // double-strand break repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010212 // response to ionizing radiation // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0051276 // chromosome organization // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1393656_at AA892817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892817 /DB_XREF=gi:3019696 /DB_XREF=EST196620 /CLONE=RKIAX62 /FEA=EST /CNT=1 /TID=Rn.44595.1 /TIER=ConsEnd /STK=1 /UG=Rn.44595 /UG_TITLE=EST, Weakly similar to S12207 hypothetical protein (M.musculus) AA892817 1393657_at BI285860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285860 /DB_XREF=gi:14939930 /DB_XREF=UI-R-CX0s-ccv-g-01-0-UI.s1 /CLONE=UI-R-CX0s-ccv-g-01-0-UI /FEA=EST /CNT=1 /TID=Rn.78613.1 /TIER=ConsEnd /STK=1 /UG=Rn.78613 /UG_TITLE=EST, Moderately similar to PCP_HUMAN LYSOSOMAL PRO-X CARBOXYPEPTIDASE PRECURSOR (H.sapiens) BI285860 prolylcarboxypeptidase (angiotensinase C) Prcp 293118 NM_001106281 0006508 // proteolysis // inferred from electronic annotation 0008236 // serine-type peptidase activity // inferred from electronic annotation 1393658_at BF396275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396275 /DB_XREF=gi:11381247 /DB_XREF=UI-R-BS2-bdw-c-07-0-UI.s1 /CLONE=UI-R-BS2-bdw-c-07-0-UI /FEA=EST /CNT=1 /TID=Rn.58571.1 /TIER=ConsEnd /STK=1 /UG=Rn.58571 /UG_TITLE=EST BF396275 1393659_at BE109193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109193 /DB_XREF=gi:8501298 /DB_XREF=UI-R-BS1-azd-a-04-0-UI.s1 /CLONE=UI-R-BS1-azd-a-04-0-UI /FEA=EST /CNT=1 /TID=Rn.51689.1 /TIER=ConsEnd /STK=1 /UG=Rn.51689 /UG_TITLE=EST BE109193 translocation associated membrane protein 1-like 1 Tram1l1 310846 NM_001107724 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1393660_at BM386815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386815 /DB_XREF=gi:18186868 /DB_XREF=UI-R-CN1-cjh-g-20-0-UI.s1 /CLONE=UI-R-CN1-cjh-g-20-0-UI /FEA=EST /CNT=1 /TID=Rn.81863.1 /TIER=ConsEnd /STK=1 /UG=Rn.81863 /UG_TITLE=EST BM386815 alkaline ceramidase 1 Acer1 301118 NM_001106875 0006665 // sphingolipid metabolic process // not recorded /// 0006672 // ceramide metabolic process // inferred from electronic annotation /// 0019216 // regulation of lipid metabolic process // not recorded /// 0046514 // ceramide catabolic process // not recorded 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0016811 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides // inferred from electronic annotation /// 0017040 // ceramidase activity // not recorded 1393661_at BG381658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381658 /DB_XREF=gi:13306130 /DB_XREF=UI-R-CT0-bud-h-05-0-UI.s1 /CLONE=UI-R-CT0-bud-h-05-0-UI /FEA=EST /CNT=1 /TID=Rn.23518.2 /TIER=ConsEnd /STK=1 /UG=Rn.23518 /UG_TITLE=ESTs BG381658 1393662_at BF396974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396974 /DB_XREF=gi:11381957 /DB_XREF=UI-R-BS2-beb-c-11-0-UI.s1 /CLONE=UI-R-BS2-beb-c-11-0-UI /FEA=EST /CNT=1 /TID=Rn.70716.1 /TIER=ConsEnd /STK=1 /UG=Rn.70716 /UG_TITLE=EST BF396974 mitogen-activated protein kinase 8 Mapk8 116554 XM_001056513 /// XM_341399 0001503 // ossification // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006915 // apoptosis // not recorded /// 0006954 // inflammatory response // inferred from direct assay /// 0006970 // response to osmotic stress // inferred from direct assay /// 0007165 // signal transduction // inferred from direct assay /// 0007254 // JNK cascade // not recorded /// 0007254 // JNK cascade // inferred from sequence or structural similarity /// 0007254 // JNK cascade // inferred from electronic annotation /// 0007258 // JUN phosphorylation // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0009408 // response to heat // inferred from direct assay /// 0009411 // response to UV // not recorded /// 0018107 // peptidyl-threonine phosphorylation // not recorded /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0031116 // positive regulation of microtubule polymerization // inferred from mutant phenotype /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0031558 // induction of apoptosis in response to chemical stimulus // not recorded /// 0042542 // response to hydrogen peroxide // inferred from direct assay /// 0043065 // positive regulation of apoptosis // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0043066 // negative regulation of apoptosis // not recorded /// 0045740 // positive regulation of DNA replication // inferred from mutant phenotype /// 0046686 // response to cadmium ion // not recorded /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0031982 // vesicle // inferred from direct assay /// 0032839 // dendrite cytoplasm // inferred from direct assay /// 0033267 // axon part // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004705 // JUN kinase activity // inferred from direct assay /// 0004705 // JUN kinase activity // not recorded /// 0004705 // JUN kinase activity // inferred from sequence or structural similarity /// 0004705 // JUN kinase activity // traceable author statement /// 0004705 // JUN kinase activity // inferred from electronic annotation /// 0004707 // MAP kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1393663_at BI274126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274126 /DB_XREF=gi:14884755 /DB_XREF=UI-R-CW0-bwf-c-07-0-UI.s1 /CLONE=UI-R-CW0-bwf-c-07-0-UI /FEA=EST /CNT=1 /TID=Rn.79956.1 /TIER=ConsEnd /STK=1 /UG=Rn.79956 /UG_TITLE=EST BI274126 solute carrier family 36 (proton/amino acid symporter), member 2 Slc36a2 246235 NM_139339 0003333 // amino acid transmembrane transport // not recorded /// 0006865 // amino acid transport // not recorded /// 0015808 // L-alanine transport // not recorded /// 0015808 // L-alanine transport // inferred from electronic annotation /// 0015816 // glycine transport // not recorded /// 0015816 // glycine transport // inferred from electronic annotation /// 0015824 // proline transport // inferred from electronic annotation /// 0015824 // proline transport // not recorded /// 0015992 // proton transport // inferred from electronic annotation /// 0015992 // proton transport // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0035524 // proline transmembrane transport // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005280 // hydrogen:amino acid symporter activity // inferred from electronic annotation /// 0005280 // hydrogen:amino acid symporter activity // not recorded /// 0005302 // L-tyrosine transmembrane transporter activity // not recorded /// 0015171 // amino acid transmembrane transporter activity // not recorded /// 0015180 // L-alanine transmembrane transporter activity // inferred from electronic annotation /// 0015180 // L-alanine transmembrane transporter activity // not recorded /// 0015187 // glycine transmembrane transporter activity // inferred from direct assay /// 0015187 // glycine transmembrane transporter activity // not recorded /// 0015187 // glycine transmembrane transporter activity // inferred from electronic annotation /// 0015193 // L-proline transmembrane transporter activity // inferred from electronic annotation /// 0015193 // L-proline transmembrane transporter activity // not recorded 1393664_at BE097138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097138 /DB_XREF=gi:8488069 /DB_XREF=UI-R-BO1-apt-f-07-0-UI.s1 /CLONE=UI-R-BO1-apt-f-07-0-UI /FEA=EST /CNT=1 /TID=Rn.49547.1 /TIER=ConsEnd /STK=1 /UG=Rn.49547 /UG_TITLE=EST BE097138 1393665_at AW526330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526330 /DB_XREF=gi:7168715 /DB_XREF=UI-R-BO1-aja-g-07-0-UI.s1 /CLONE=UI-R-BO1-aja-g-07-0-UI /FEA=EST /CNT=1 /TID=Rn.67796.1 /TIER=ConsEnd /STK=1 /UG=Rn.67796 /UG_TITLE=EST AW526330 1393666_at BE101321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101321 /DB_XREF=gi:8493233 /DB_XREF=UI-R-BJ1-aui-f-08-0-UI.s1 /CLONE=UI-R-BJ1-aui-f-08-0-UI /FEA=EST /CNT=1 /TID=Rn.50045.1 /TIER=ConsEnd /STK=1 /UG=Rn.50045 /UG_TITLE=EST BE101321 1393667_at BE106620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106620 /DB_XREF=gi:8498722 /DB_XREF=UI-R-BO1-asq-b-03-0-UI.s1 /CLONE=UI-R-BO1-asq-b-03-0-UI /FEA=EST /CNT=1 /TID=Rn.51007.1 /TIER=ConsEnd /STK=1 /UG=Rn.51007 /UG_TITLE=EST BE106620 zinc finger, matrin type 4 Zmat4 684961 NM_001134747 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393668_at BF408421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408421 /DB_XREF=gi:11396396 /DB_XREF=UI-R-BJ2-brc-e-09-0-UI.s1 /CLONE=UI-R-BJ2-brc-e-09-0-UI /FEA=EST /CNT=1 /TID=Rn.61142.1 /TIER=ConsEnd /STK=1 /UG=Rn.61142 /UG_TITLE=EST BF408421 peroxisomal biogenesis factor 11 gamma Pex11g 288369 NM_001105902 1393669_at BM383757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383757 /DB_XREF=gi:18183810 /DB_XREF=UI-R-DM1-ckb-b-17-0-UI.s1 /CLONE=UI-R-DM1-ckb-b-17-0-UI /FEA=EST /CNT=1 /TID=Rn.81353.1 /TIER=ConsEnd /STK=1 /UG=Rn.81353 /UG_TITLE=EST BM383757 RAB1B, member RAS oncogene family-like /// RAB1B, member RAS oncogene family LOC100363782 /// Rab1b 100126191 /// 100363782 NM_001109979 /// XM_002727597 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1393670_at BM386651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386651 /DB_XREF=gi:18186704 /DB_XREF=UI-R-CN1-cjg-j-01-0-UI.s1 /CLONE=UI-R-CN1-cjg-j-01-0-UI /FEA=EST /CNT=1 /TID=Rn.81825.1 /TIER=ConsEnd /STK=1 /UG=Rn.81825 /UG_TITLE=EST BM386651 protein tyrosine phosphatase, non-receptor type 14 Ptpn14 305064 NM_001107200 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation 0005856 // cytoskeleton // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1393671_at BE107491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107491 /DB_XREF=gi:8499596 /DB_XREF=UI-R-BS1-ayu-c-10-0-UI.s1 /CLONE=UI-R-BS1-ayu-c-10-0-UI /FEA=EST /CNT=1 /TID=Rn.51190.1 /TIER=ConsEnd /STK=1 /UG=Rn.51190 /UG_TITLE=EST, Moderately similar to CDA3_HUMAN Protocadherin alpha 3 precursor (PCDH-alpha3) (H.sapiens) BE107491 protocadherin alpha 12 /// protocadherin alpha subfamily C, 2 Pcdha12 /// Pcdhac2 116779 /// 393092 NM_053940 /// NM_201422 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0042476 // odontogenesis // non-traceable author statement 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393672_at BE117954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117954 /DB_XREF=gi:8510059 /DB_XREF=UI-R-BS1-azm-h-10-0-UI.s1 /CLONE=UI-R-BS1-azm-h-10-0-UI /FEA=EST /CNT=1 /TID=Rn.52931.1 /TIER=ConsEnd /STK=1 /UG=Rn.52931 /UG_TITLE=EST BE117954 hemicentin 1 Hmcn1 289094 XM_001070255 /// XM_222716 0006468 // protein phosphorylation // inferred from electronic annotation /// 0008218 // bioluminescence // inferred from electronic annotation /// 0018298 // protein-chromophore linkage // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0005604 // basement membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0030054 // cell junction // not recorded 0005021 // vascular endothelial growth factor receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1393673_at BE120005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120005 /DB_XREF=gi:8512110 /DB_XREF=UI-R-CA0-bao-e-04-0-UI.s1 /CLONE=UI-R-CA0-bao-e-04-0-UI /FEA=EST /CNT=1 /TID=Rn.65075.1 /TIER=ConsEnd /STK=1 /UG=Rn.65075 /UG_TITLE=EST BE120005 short chain dehydrogenase/reductase family 39U, member 1 Sdr39u1 361044 NM_001108378 0008152 // metabolic process // inferred from electronic annotation /// 0044237 // cellular metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation 1393674_at BF396736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396736 /DB_XREF=gi:11381716 /DB_XREF=UI-R-BS2-beu-e-11-0-UI.s1 /CLONE=UI-R-BS2-beu-e-11-0-UI /FEA=EST /CNT=1 /TID=Rn.58669.1 /TIER=ConsEnd /STK=1 /UG=Rn.58669 /UG_TITLE=EST BF396736 1393675_at BM383075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383075 /DB_XREF=gi:18183128 /DB_XREF=UI-R-DS0-cje-f-21-0-UI.s1 /CLONE=UI-R-DS0-cje-f-21-0-UI /FEA=EST /CNT=1 /TID=Rn.81283.1 /TIER=ConsEnd /STK=1 /UG=Rn.81283 /UG_TITLE=EST BM383075 butyrophilin-like 1 Btnl1 407781 NM_001002803 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1393676_at BE106495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106495 /DB_XREF=gi:8498597 /DB_XREF=UI-R-BO1-aso-f-10-0-UI.s1 /CLONE=UI-R-BO1-aso-f-10-0-UI /FEA=EST /CNT=1 /TID=Rn.74834.1 /TIER=ConsEnd /STK=1 /UG=Rn.74834 /UG_TITLE=EST BE106495 1393677_at BI275079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275079 /DB_XREF=gi:14886587 /DB_XREF=UI-R-CX0-bxb-d-07-0-UI.s1 /CLONE=UI-R-CX0-bxb-d-07-0-UI /FEA=EST /CNT=1 /TID=Rn.80047.1 /TIER=ConsEnd /STK=1 /UG=Rn.80047 /UG_TITLE=EST BI275079 1393678_at BI275975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275975 /DB_XREF=gi:14920427 /DB_XREF=UI-R-CX0-bxi-f-07-0-UI.s1 /CLONE=UI-R-CX0-bxi-f-07-0-UI /FEA=EST /CNT=1 /TID=Rn.28431.2 /TIER=ConsEnd /STK=1 /UG=Rn.28431 /UG_TITLE=ESTs BI275975 similar to CG10084-PA RGD1308297 306137 XR_005470 /// XR_009612 0006397 // mRNA processing // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393679_at BE102362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102362 /DB_XREF=gi:8494461 /DB_XREF=UI-R-BT1-aql-f-08-0-UI.s1 /CLONE=UI-R-BT1-aql-f-08-0-UI /FEA=EST /CNT=1 /TID=Rn.50278.1 /TIER=ConsEnd /STK=1 /UG=Rn.50278 /UG_TITLE=EST BE102362 1393680_at BE103209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103209 /DB_XREF=gi:8495273 /DB_XREF=UI-R-BT1-aqx-d-09-0-UI.s1 /CLONE=UI-R-BT1-aqx-d-09-0-UI /FEA=EST /CNT=1 /TID=Rn.74781.1 /TIER=ConsEnd /STK=1 /UG=Rn.74781 /UG_TITLE=EST, Weakly similar to CALM_HUMAN CALMODULIN (R.norvegicus) BE103209 centrin 1 Cetn1 84592 NM_053461 0007067 // mitosis // traceable author statement /// 0034605 // cellular response to heat // inferred from electronic annotation /// 0034605 // cellular response to heat // not recorded 0000922 // spindle pole // inferred from electronic annotation /// 0000922 // spindle pole // not recorded /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005814 // centriole // inferred from direct assay /// 0032391 // photoreceptor connecting cilium // inferred from electronic annotation /// 0032391 // photoreceptor connecting cilium // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit binding // inferred from electronic annotation /// 0031683 // G-protein beta/gamma-subunit binding // not recorded 1393681_at BF390882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390882 /DB_XREF=gi:11375729 /DB_XREF=UI-R-CA1-bci-e-11-0-UI.s1 /CLONE=UI-R-CA1-bci-e-11-0-UI /FEA=EST /CNT=1 /TID=Rn.57311.1 /TIER=ConsEnd /STK=1 /UG=Rn.57311 /UG_TITLE=EST, Weakly similar to MAST CELL TRYPTASE PRECURSOR (R.norvegicus) BF390882 testis serine protease 5 Tessp5 408244 NM_001008864 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // traceable author statement /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation 1393682_at BF410504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410504 /DB_XREF=gi:11398479 /DB_XREF=UI-R-CA0-bme-d-10-0-UI.s1 /CLONE=UI-R-CA0-bme-d-10-0-UI /FEA=EST /CNT=1 /TID=Rn.61727.1 /TIER=ConsEnd /STK=1 /UG=Rn.61727 /UG_TITLE=EST BF410504 G protein-coupled receptor 34 Gpr34 554353 NM_001024925 0006461 // protein complex assembly // traceable author statement /// 0006886 // intracellular protein transport // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043005 // neuron projection // inferred from physical interaction /// 0043234 // protein complex // inferred from direct assay 0003713 // transcription coactivator activity // traceable author statement /// 0004683 // calmodulin-dependent protein kinase activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // traceable author statement /// 0008022 // protein C-terminus binding // inferred from mutant phenotype /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from physical interaction /// 0042043 // neurexin binding // inferred from physical interaction /// 0045028 // purinergic nucleotide receptor activity, G-protein coupled // inferred from electronic annotation 1393683_at BF415479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415479 /DB_XREF=gi:11403468 /DB_XREF=UI-R-CA1-bjz-d-06-0-UI.s1 /CLONE=UI-R-CA1-bjz-d-06-0-UI /FEA=EST /CNT=1 /TID=Rn.72074.1 /TIER=ConsEnd /STK=1 /UG=Rn.72074 /UG_TITLE=EST BF415479 similar to KIAA0368 RGD1306148 313196 XR_085838 /// XR_086255 0030433 // ER-associated protein catabolic process // not recorded 0000502 // proteasome complex // not recorded /// 0005634 // nucleus // not recorded /// 0005769 // early endosome // not recorded /// 0005770 // late endosome // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005802 // trans-Golgi network // not recorded /// 0005813 // centrosome // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0030134 // ER to Golgi transport vesicle // not recorded 0005488 // binding // inferred from electronic annotation 1393684_at BF389489 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389489 /DB_XREF=gi:11374324 /DB_XREF=UI-R-CJ0-bfc-d-03-0-UI.s1 /CLONE=UI-R-CJ0-bfc-d-03-0-UI /FEA=EST /CNT=1 /TID=Rn.56957.1 /TIER=ConsEnd /STK=1 /UG=Rn.56957 /UG_TITLE=EST BF389489 helicase, lymphoid specific Hells 294071 NM_001106371 0001655 // urogenital system development // not recorded /// 0006306 // DNA methylation // not recorded /// 0006342 // chromatin silencing // not recorded /// 0006346 // methylation-dependent chromatin silencing // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0007275 // multicellular organismal development // not recorded /// 0010216 // maintenance of DNA methylation // not recorded /// 0031508 // centromeric heterochromatin formation // not recorded /// 0046651 // lymphocyte proliferation // not recorded 0000775 // chromosome, centromeric region // not recorded /// 0005634 // nucleus // not recorded /// 0005721 // centromeric heterochromatin // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1393685_at BF404962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404962 /DB_XREF=gi:11392937 /DB_XREF=UI-R-CA1-bij-g-07-0-UI.s1 /CLONE=UI-R-CA1-bij-g-07-0-UI /FEA=EST /CNT=1 /TID=Rn.75810.1 /TIER=ConsEnd /STK=1 /UG=Rn.75810 /UG_TITLE=EST, Moderately similar to T42667 hypothetical protein DKFZp434B0417.1 (H.sapiens) BF404962 PDZ domain containing RING finger 4 Pdzrn4 315250 NM_001108107 0005515 // protein binding // inferred from electronic annotation 1393686_at AA818655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818655 /DB_XREF=gi:4200466 /DB_XREF=UI-R-A0-az-g-04-0-UI.s1 /CLONE=UI-R-A0-az-g-04-0-UI /FEA=EST /CNT=1 /TID=Rn.16518.1 /TIER=ConsEnd /STK=1 /UG=Rn.16518 /UG_TITLE=EST AA818655 1393687_at BE113870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113870 /DB_XREF=gi:8505975 /DB_XREF=UI-R-CA0-axe-d-05-0-UI.s1 /CLONE=UI-R-CA0-axe-d-05-0-UI /FEA=EST /CNT=1 /TID=Rn.52261.1 /TIER=ConsEnd /STK=1 /UG=Rn.52261 /UG_TITLE=EST BE113870 1393688_at AI012782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012782 /DB_XREF=gi:3226614 /DB_XREF=EST207233 /CLONE=RPLBB56 /FEA=EST /CNT=1 /TID=Rn.3456.2 /TIER=ConsEnd /STK=1 /UG=Rn.3456 /UG_TITLE=ESTs AI012782 similar to paired immunoglobin-like type 2 receptor beta /// similar to cell surface receptor FDFACT LOC685111 /// RGD1559588 304349 /// 685111 XM_001062357 /// XM_001075881 /// XM_221990 1393689_at BE097322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097322 /DB_XREF=gi:8488248 /DB_XREF=UI-R-BO1-apv-h-11-0-UI.s1 /CLONE=UI-R-BO1-apv-h-11-0-UI /FEA=EST /CNT=1 /TID=Rn.49587.1 /TIER=ConsEnd /STK=1 /UG=Rn.49587 /UG_TITLE=EST, Moderately similar to YC65_HUMAN HYPOTHETICAL PROTEIN CGI-65 (H.sapiens) BE097322 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1 Ndufaf1 296086 NM_001106500 0005739 // mitochondrion // not recorded 0005515 // protein binding // not recorded 1393690_at AA818627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818627 /DB_XREF=gi:4228417 /DB_XREF=UI-R-A0-aw-b-03-0-UI.s1 /CLONE=UI-R-A0-aw-b-03-0-UI /FEA=EST /CNT=1 /TID=Rn.16736.1 /TIER=ConsEnd /STK=1 /UG=Rn.16736 /UG_TITLE=EST, Moderately similar to ISI1 RAT INSULIN-INDUCED PROTEIN 1 (R.norvegicus) AA818627 insulin induced gene 2 Insig2 288985 NM_178091 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // not recorded /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // not recorded /// 0006991 // response to sterol depletion // inferred from electronic annotation /// 0006991 // response to sterol depletion // not recorded /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // not recorded /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0010894 // negative regulation of steroid biosynthetic process // inferred from electronic annotation /// 0010894 // negative regulation of steroid biosynthetic process // not recorded /// 0016126 // sterol biosynthetic process // not recorded /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0030967 // ER-nuclear sterol response pathway // not recorded /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0033993 // response to lipid // inferred from expression pattern /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0042474 // middle ear morphogenesis // inferred from electronic annotation /// 0042474 // middle ear morphogenesis // not recorded /// 0045717 // negative regulation of fatty acid biosynthetic process // inferred from electronic annotation /// 0045717 // negative regulation of fatty acid biosynthetic process // not recorded /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded /// 0060363 // cranial suture morphogenesis // inferred from electronic annotation /// 0060363 // cranial suture morphogenesis // not recorded /// 0070542 // response to fatty acid // inferred from expression pattern 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032937 // SREBP-SCAP-Insig complex // not recorded 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // inferred from direct assay 1393691_at BG376718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376718 /DB_XREF=gi:13301190 /DB_XREF=UI-R-CU0-buv-b-06-0-UI.s1 /CLONE=UI-R-CU0-buv-b-06-0-UI /FEA=EST /CNT=1 /TID=Rn.73142.1 /TIER=ConsEnd /STK=1 /UG=Rn.73142 /UG_TITLE=EST BG376718 1393692_at AA965160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965160 /DB_XREF=gi:4280034 /DB_XREF=UI-R-C0-hc-a-03-0-UI.s1 /CLONE=UI-R-C0-hc-a-03-0-UI /FEA=EST /CNT=1 /TID=Rn.33014.1 /TIER=ConsEnd /STK=1 /UG=Rn.33014 /UG_TITLE=EST, Moderately similar to PCFB_HUMAN PRE-MRNA CLEAVAGE COMPLEX II PROTEIN PCF11 (H.sapiens) AA965160 PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae) Pcf11 361605 XM_001062815 /// XM_341883 0008380 // RNA splicing // not recorded 1393693_at BI290553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290553 /DB_XREF=gi:14949230 /DB_XREF=UI-R-DK0-cgd-f-01-0-UI.s1 /CLONE=UI-R-DK0-cgd-f-01-0-UI /FEA=EST /CNT=1 /TID=Rn.79162.1 /TIER=ConsEnd /STK=1 /UG=Rn.79162 /UG_TITLE=EST, Weakly similar to amiloride binding protein (Rattus norvegicus) (R.norvegicus) BI290553 diamine oxidase-like protein 1 Doxl1 312316 NM_199233 0009308 // amine metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008131 // primary amine oxidase activity // inferred from electronic annotation /// 0048038 // quinone binding // inferred from electronic annotation 1393694_at BI302319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302319 /DB_XREF=gi:14978599 /DB_XREF=UI-R-DM0-ciq-d-17-0-UI.s1 /CLONE=UI-R-DM0-ciq-d-17-0-UI /FEA=EST /CNT=1 /TID=Rn.77388.1 /TIER=ConsEnd /STK=1 /UG=Rn.77388 /UG_TITLE=EST BI302319 1393695_at AI501474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501474 /DB_XREF=gi:4399325 /DB_XREF=UI-R-C2p-sb-e-12-0-UI.s1 /CLONE=UI-R-C2p-sb-e-12-0-UI /FEA=EST /CNT=1 /TID=Rn.35494.1 /TIER=ConsEnd /STK=1 /UG=Rn.35494 /UG_TITLE=EST AI501474 1393696_at AA818846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818846 /DB_XREF=gi:4227518 /DB_XREF=UI-R-A0-ar-g-07-0-UI.s1 /CLONE=UI-R-A0-ar-g-07-0-UI /FEA=EST /CNT=1 /TID=Rn.16549.1 /TIER=ConsEnd /STK=1 /UG=Rn.16549 /UG_TITLE=EST AA818846 fin bud initiation factor homolog (zebrafish) Fibin 499856 NM_001025042 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation 1393697_at BE107795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107795 /DB_XREF=gi:8499900 /DB_XREF=UI-R-CA0-awx-a-03-0-UI.s1 /CLONE=UI-R-CA0-awx-a-03-0-UI /FEA=EST /CNT=1 /TID=Rn.51292.1 /TIER=ConsEnd /STK=1 /UG=Rn.51292 /UG_TITLE=EST, Highly similar to GDFB_RAT Growthdifferentiation factor 11 precursor (Bone morphogenetic protein 11) (R.norvegicus) BE107795 growth differentiation factor 11 Gdf11 29454 XM_001071574 /// XM_343148 0001656 // metanephros development // inferred from electronic annotation /// 0001656 // metanephros development // not recorded /// 0001657 // ureteric bud development // inferred from electronic annotation /// 0001657 // ureteric bud development // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0021512 // spinal cord anterior/posterior patterning // inferred from electronic annotation /// 0021512 // spinal cord anterior/posterior patterning // not recorded /// 0031016 // pancreas development // inferred from electronic annotation /// 0031016 // pancreas development // not recorded /// 0040007 // growth // inferred from electronic annotation /// 0045596 // negative regulation of cell differentiation // not recorded /// 0045596 // negative regulation of cell differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from mutant phenotype /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded /// 0048593 // camera-type eye morphogenesis // inferred from electronic annotation /// 0048593 // camera-type eye morphogenesis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008083 // growth factor activity // inferred from electronic annotation 1393698_at BE106785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106785 /DB_XREF=gi:8498887 /DB_XREF=UI-R-BT1-ast-b-06-0-UI.s1 /CLONE=UI-R-BT1-ast-b-06-0-UI /FEA=EST /CNT=1 /TID=Rn.68961.1 /TIER=ConsEnd /STK=1 /UG=Rn.68961 /UG_TITLE=EST BE106785 Death inducer-obliterator 1 Dido1 362286 NM_001108612 0006915 // apoptosis // not recorded 0005634 // nucleus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393699_at BF391905 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391905 /DB_XREF=gi:11376761 /DB_XREF=UI-R-CA1-bcy-h-12-0-UI.s1 /CLONE=UI-R-CA1-bcy-h-12-0-UI /FEA=EST /CNT=1 /TID=Rn.57682.1 /TIER=ConsEnd /STK=1 /UG=Rn.57682 /UG_TITLE=EST BF391905 1393700_at AA875420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875420 /DB_XREF=gi:4231300 /DB_XREF=UI-R-E0-cs-e-08-0-UI.s1 /CLONE=UI-R-E0-cs-e-08-0-UI /FEA=EST /CNT=1 /TID=Rn.21413.1 /TIER=ConsEnd /STK=1 /UG=Rn.21413 /UG_TITLE=ESTs AA875420 1393701_at BF397095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397095 /DB_XREF=gi:11382078 /DB_XREF=UI-R-BS2-bei-b-07-0-UI.s1 /CLONE=UI-R-BS2-bei-b-07-0-UI /FEA=EST /CNT=1 /TID=Rn.58753.1 /TIER=ConsEnd /STK=1 /UG=Rn.58753 /UG_TITLE=EST BF397095 debranching enzyme homolog 1 (S. cerevisiae) Dbr1 681234 NM_001109437 0000375 // RNA splicing, via transesterification reactions // inferred from electronic annotation /// 0000375 // RNA splicing, via transesterification reactions // not recorded /// 0000398 // nuclear mRNA splicing, via spliceosome // inferred from electronic annotation /// 0000398 // nuclear mRNA splicing, via spliceosome // not recorded /// 0006397 // mRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0008419 // RNA lariat debranching enzyme activity // inferred from electronic annotation /// 0008419 // RNA lariat debranching enzyme activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation 1393702_at BF397290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397290 /DB_XREF=gi:11382278 /DB_XREF=UI-R-BS2-bek-f-10-0-UI.s1 /CLONE=UI-R-BS2-bek-f-10-0-UI /FEA=EST /CNT=1 /TID=Rn.58792.1 /TIER=ConsEnd /STK=1 /UG=Rn.58792 /UG_TITLE=EST, Highly similar to I49635 mouse Dhm1 protein - mouse (M.musculus) BF397290 5'-3' exoribonuclease 2 Xrn2 362229 NM_001108596 0000738 // DNA catabolic process, exonucleolytic // not recorded /// 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0016049 // cell growth // not recorded /// 0016070 // RNA metabolic process // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0004534 // 5'-3' exoribonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008409 // 5'-3' exonuclease activity // not recorded 1393703_at BI288832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288832 /DB_XREF=gi:14945795 /DB_XREF=UI-R-DK0-cdf-d-08-0-UI.s1 /CLONE=UI-R-DK0-cdf-d-08-0-UI /FEA=EST /CNT=1 /TID=Rn.78948.1 /TIER=ConsEnd /STK=1 /UG=Rn.78948 /UG_TITLE=EST BI288832 human immunodeficiency virus type I enhancer binding protein 3 Hivep3 313557 NM_001107972 0045941 // positive regulation of transcription // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded 1393704_at AI136988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136988 /DB_XREF=gi:3637765 /DB_XREF=UI-R-C2p-nz-h-11-0-UI.s1 /CLONE=UI-R-C2p-nz-h-11-0-UI /FEA=EST /CNT=1 /TID=Rn.27288.1 /TIER=ConsEnd /STK=1 /UG=Rn.27288 /UG_TITLE=EST, Weakly similar to TC17 RAT TRANSCRIPTION FACTOR 17 (R.norvegicus) AI136988 Similar to casein kinase 1, gamma 3 isoform 2 LOC500584 500584 XR_008974 /// XR_086267 1393705_at AA819035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819035 /DB_XREF=gi:4227700 /DB_XREF=UI-R-A0-ba-f-01-0-UI.s1 /CLONE=UI-R-A0-ba-f-01-0-UI /FEA=EST /CNT=1 /TID=Rn.33933.1 /TIER=ConsEnd /STK=1 /UG=Rn.33933 /UG_TITLE=ESTs AA819035 1393706_at BE109939 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109939 /DB_XREF=gi:8502044 /DB_XREF=UI-R-BJ1-aum-b-05-0-UI.s1 /CLONE=UI-R-BJ1-aum-b-05-0-UI /FEA=EST /CNT=1 /TID=Rn.51773.1 /TIER=ConsEnd /STK=1 /UG=Rn.51773 /UG_TITLE=EST, Moderately similar to STEA_HUMAN SIX TRANSMEMBRANE EPITHELIAL ANTIGEN OF PROSTATE (H.sapiens) BE109939 six transmembrane epithelial antigen of the prostate 1 Steap1 297738 NM_001106629 0016021 // integral to membrane // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1393707_at AW527957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527957 /DB_XREF=gi:7170371 /DB_XREF=UI-R-BT1-akg-b-01-0-UI.s1 /CLONE=UI-R-BT1-akg-b-01-0-UI /FEA=EST /CNT=1 /TID=Rn.46721.1 /TIER=ConsEnd /STK=1 /UG=Rn.46721 /UG_TITLE=EST AW527957 Bcl2-like 2 Bcl2l2 60434 NM_021850 0006915 // apoptosis // inferred from mutant phenotype /// 0006915 // apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0060011 // Sertoli cell proliferation // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0031966 // mitochondrial membrane // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0051400 // BH domain binding // inferred from physical interaction 1393708_at BE115766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115766 /DB_XREF=gi:8507871 /DB_XREF=UI-R-CA0-axs-f-04-0-UI.s1 /CLONE=UI-R-CA0-axs-f-04-0-UI /FEA=EST /CNT=1 /TID=Rn.52565.1 /TIER=ConsEnd /STK=1 /UG=Rn.52565 /UG_TITLE=EST BE115766 basic helix-loop-helix family, member e22 Bhlhe22 365748 NM_001108940 0016481 // negative regulation of transcription // not recorded /// 0030182 // neuron differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0060040 // retinal bipolar neuron differentiation // not recorded /// 0060042 // retina morphogenesis in camera-type eye // not recorded 0005634 // nucleus // inferred from electronic annotation 0016564 // transcription repressor activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1393709_at BF394784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394784 /DB_XREF=gi:11379742 /DB_XREF=UI-R-CA0-bge-h-10-0-UI.s1 /CLONE=UI-R-CA0-bge-h-10-0-UI /FEA=EST /CNT=1 /TID=Rn.58353.1 /TIER=ConsEnd /STK=1 /UG=Rn.58353 /UG_TITLE=EST BF394784 1393710_at BE102418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102418 /DB_XREF=gi:8494517 /DB_XREF=UI-R-BT1-aqm-d-07-0-UI.s1 /CLONE=UI-R-BT1-aqm-d-07-0-UI /FEA=EST /CNT=1 /TID=Rn.68643.1 /TIER=ConsEnd /STK=1 /UG=Rn.68643 /UG_TITLE=EST, Weakly similar to AXO1 RAT AXONIN-1 PRECURSOR (R.norvegicus) BE102418 intercellular adhesion molecule 5, telencephalin Icam5 313785 NM_001172079 /// XM_001077293 /// XM_233737 0006909 // phagocytosis // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1393711_at BF386180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386180 /DB_XREF=gi:11371004 /DB_XREF=UI-R-CA1-bba-h-07-0-UI.s1 /CLONE=UI-R-CA1-bba-h-07-0-UI /FEA=EST /CNT=1 /TID=Rn.56202.1 /TIER=ConsEnd /STK=1 /UG=Rn.56202 /UG_TITLE=EST BF386180 cDNA sequence BC048679-like LOC100360933 100360933 NM_001193275 /// XM_002725642 /// XM_002728763 1393712_at BF419515 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419515 /DB_XREF=gi:11407504 /DB_XREF=UI-R-CA0-bns-g-10-0-UI.s1 /CLONE=UI-R-CA0-bns-g-10-0-UI /FEA=EST /CNT=1 /TID=Rn.63547.1 /TIER=ConsEnd /STK=1 /UG=Rn.63547 /UG_TITLE=EST BF419515 1393713_at BM389780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389780 /DB_XREF=gi:18189833 /DB_XREF=UI-R-CN1-cjp-d-03-0-UI.s1 /CLONE=UI-R-CN1-cjp-d-03-0-UI /FEA=EST /CNT=1 /TID=Rn.82313.1 /TIER=ConsEnd /STK=1 /UG=Rn.82313 /UG_TITLE=EST BM389780 GDP-mannose 4, 6-dehydratase Gmds 291095 NM_001039606 0008152 // metabolic process // inferred from electronic annotation /// 0019673 // GDP-mannose metabolic process // inferred from electronic annotation /// 0044237 // cellular metabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008446 // GDP-mannose 4,6-dehydratase activity // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation 1393714_at AW523488 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523488 /DB_XREF=gi:7165873 /DB_XREF=UI-R-BO0-aho-g-03-0-UI.s1 /CLONE=UI-R-BO0-aho-g-03-0-UI /FEA=EST /CNT=1 /TID=Rn.45654.1 /TIER=ConsEnd /STK=1 /UG=Rn.45654 /UG_TITLE=EST AW523488 1393715_s_at BG376382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376382 /DB_XREF=gi:13300854 /DB_XREF=UI-R-CT0-buo-g-12-0-UI.s1 /CLONE=UI-R-CT0-buo-g-12-0-UI /FEA=EST /CNT=1 /TID=Rn.66384.1 /TIER=ConsEnd /STK=1 /UG=Rn.66384 /UG_TITLE=EST BG376382 brachyury 2 T2 681288 NM_001161835 1393716_at BE104555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104555 /DB_XREF=gi:8496655 /DB_XREF=UI-R-BX0-arq-g-05-0-UI.s1 /CLONE=UI-R-BX0-arq-g-05-0-UI /FEA=EST /CNT=1 /TID=Rn.74801.1 /TIER=ConsEnd /STK=1 /UG=Rn.74801 /UG_TITLE=EST BE104555 solute carrier family 35, member F1 Slc35f1 502421 NM_001109338 1393717_at BF397889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397889 /DB_XREF=gi:11382874 /DB_XREF=UI-R-BS2-bec-g-12-0-UI.s1 /CLONE=UI-R-BS2-bec-g-12-0-UI /FEA=EST /CNT=1 /TID=Rn.58920.1 /TIER=ConsEnd /STK=1 /UG=Rn.58920 /UG_TITLE=EST BF397889 1393718_at BE117189 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117189 /DB_XREF=gi:8509294 /DB_XREF=UI-R-BS1-aym-h-05-0-UI.s1 /CLONE=UI-R-BS1-aym-h-05-0-UI /FEA=EST /CNT=1 /TID=Rn.52792.1 /TIER=ConsEnd /STK=1 /UG=Rn.52792 /UG_TITLE=EST BE117189 1393719_at BF412036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412036 /DB_XREF=gi:11400025 /DB_XREF=UI-R-BT1-bms-f-10-0-UI.s1 /CLONE=UI-R-BT1-bms-f-10-0-UI /FEA=EST /CNT=1 /TID=Rn.61986.1 /TIER=ConsEnd /STK=1 /UG=Rn.61986 /UG_TITLE=EST BF412036 1393720_at BF413075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413075 /DB_XREF=gi:11401064 /DB_XREF=UI-R-CA0-bod-d-06-0-UI.s1 /CLONE=UI-R-CA0-bod-d-06-0-UI /FEA=EST /CNT=1 /TID=Rn.71922.1 /TIER=ConsEnd /STK=1 /UG=Rn.71922 /UG_TITLE=EST BF413075 zinc finger protein 644 Znf644 305127 NM_001139484 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1393721_at BF397181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397181 /DB_XREF=gi:11382164 /DB_XREF=UI-R-BS2-bej-c-07-0-UI.s1 /CLONE=UI-R-BS2-bej-c-07-0-UI /FEA=EST /CNT=1 /TID=Rn.70752.1 /TIER=ConsEnd /STK=1 /UG=Rn.70752 /UG_TITLE=EST BF397181 zinc finger CCCH-type containing 11A Zc3h11a 360845 NM_001047902 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393722_at BE108945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108945 /DB_XREF=gi:8501050 /DB_XREF=UI-R-BS1-aza-b-12-0-UI.s1 /CLONE=UI-R-BS1-aza-b-12-0-UI /FEA=EST /CNT=1 /TID=Rn.51641.1 /TIER=ConsEnd /STK=1 /UG=Rn.51641 /UG_TITLE=EST BE108945 fem-1 homolog c (C. elegans) Fem1c 302288 NM_001106932 1393723_at AW523714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523714 /DB_XREF=gi:7166099 /DB_XREF=UI-R-BO0-aih-c-09-0-UI.s1 /CLONE=UI-R-BO0-aih-c-09-0-UI /FEA=EST /CNT=1 /TID=Rn.65962.1 /TIER=ConsEnd /STK=1 /UG=Rn.65962 /UG_TITLE=ESTs, Weakly similar to SNK_RAT SERINETHREONINE-PROTEIN KINASE SNK (SERUM INDUCIBLE KINASE) (R.norvegicus) AW523714 polo-like kinase 5 Plk5 314627 NM_001170557 /// XM_001076512 /// XM_234920 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0042801 // polo kinase kinase activity // inferred from electronic annotation 1393724_at BE113911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113911 /DB_XREF=gi:8506016 /DB_XREF=UI-R-CA0-axe-h-06-0-UI.s1 /CLONE=UI-R-CA0-axe-h-06-0-UI /FEA=EST /CNT=1 /TID=Rn.65023.1 /TIER=ConsEnd /STK=1 /UG=Rn.65023 /UG_TITLE=EST, Highly similar to DI-N-ACETYLCHITOBIASE PRECURSOR (R.norvegicus) BE113911 spermatogenesis associated 1 Spata1 362056 NM_001014177 0006508 // proteolysis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation 1393725_at AI501187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501187 /DB_XREF=gi:4399038 /DB_XREF=UI-R-C2p-rt-e-12-0-UI.s1 /CLONE=UI-R-C2p-rt-e-12-0-UI /FEA=EST /CNT=1 /TID=Rn.35296.1 /TIER=ConsEnd /STK=1 /UG=Rn.35296 /UG_TITLE=EST AI501187 desmoglein 1 beta Dsg1b 291755 XM_002725320 /// XM_214616 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0032570 // response to progesterone stimulus // inferred from expression pattern /// 0050821 // protein stabilization // not recorded /// 0060135 // maternal process involved in female pregnancy // inferred from expression pattern 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // not recorded /// 0009898 // internal side of plasma membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016328 // lateral plasma membrane // inferred from direct assay /// 0030057 // desmosome // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0045295 // gamma-catenin binding // not recorded 1393726_at AI030773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030773 /DB_XREF=gi:3248599 /DB_XREF=UI-R-C0-jo-c-04-0-UI.s1 /CLONE=UI-R-C0-jo-c-04-0-UI /FEA=EST /CNT=1 /TID=Rn.21629.1 /TIER=ConsEnd /STK=1 /UG=Rn.21629 /UG_TITLE=EST AI030773 double homeobox B-like Duxbl 306226 XM_001056985 /// XM_224643 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1393727_at BE117729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117729 /DB_XREF=gi:8509834 /DB_XREF=UI-R-BS1-azf-c-06-0-UI.s1 /CLONE=UI-R-BS1-azf-c-06-0-UI /FEA=EST /CNT=1 /TID=Rn.52881.1 /TIER=ConsEnd /STK=1 /UG=Rn.52881 /UG_TITLE=EST BE117729 1393728_at AA964541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964541 /DB_XREF=gi:4279415 /DB_XREF=UI-R-E1-go-a-02-0-UI.s1 /CLONE=UI-R-E1-go-a-02-0-UI /FEA=EST /CNT=1 /TID=Rn.11836.1 /TIER=ConsEnd /STK=1 /UG=Rn.11836 /UG_TITLE=EST AA964541 1393729_at BE112114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112114 /DB_XREF=gi:8504219 /DB_XREF=UI-R-BJ1-avk-g-10-0-UI.s1 /CLONE=UI-R-BJ1-avk-g-10-0-UI /FEA=EST /CNT=1 /TID=Rn.69229.1 /TIER=ConsEnd /STK=1 /UG=Rn.69229 /UG_TITLE=EST BE112114 neuropilin (NRP) and tolloid (TLL)-like 2 Neto2 307757 NM_001107417 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1393730_at BI277836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277836 /DB_XREF=gi:14924095 /DB_XREF=UI-R-CX0-bxk-b-09-0-UI.s1 /CLONE=UI-R-CX0-bxk-b-09-0-UI /FEA=EST /CNT=1 /TID=Rn.77698.1 /TIER=ConsEnd /STK=1 /UG=Rn.77698 /UG_TITLE=EST BI277836 ADAM metallopeptidase with thrombospondin type 1 motif, 4 Adamts4 66015 NM_023959 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0006516 // glycoprotein catabolic process // traceable author statement 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation 0002020 // protease binding // not recorded /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from direct assay /// 0008237 // metallopeptidase activity // not recorded /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393731_at BF403369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403369 /DB_XREF=gi:11391384 /DB_XREF=UI-R-CA1-biy-f-07-0-UI.s1 /CLONE=UI-R-CA1-biy-f-07-0-UI /FEA=EST /CNT=1 /TID=Rn.71174.1 /TIER=ConsEnd /STK=1 /UG=Rn.71174 /UG_TITLE=EST BF403369 ring finger protein 40 Rnf40 266712 NM_153471 0006511 // ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0010390 // histone monoubiquitination // inferred from electronic annotation /// 0010390 // histone monoubiquitination // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0033523 // histone H2B ubiquitination // inferred from electronic annotation /// 0033523 // histone H2B ubiquitination // not recorded 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0000151 // ubiquitin ligase complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0019717 // synaptosome // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0017075 // syntaxin-1 binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0032403 // protein complex binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1393732_at AI071024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071024 /DB_XREF=gi:3396129 /DB_XREF=UI-R-C1-ln-e-05-0-UI.s1 /CLONE=UI-R-C1-ln-e-05-0-UI /FEA=EST /CNT=1 /TID=Rn.19575.1 /TIER=ConsEnd /STK=1 /UG=Rn.19575 /UG_TITLE=EST AI071024 1393733_at BF402788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402788 /DB_XREF=gi:11390763 /DB_XREF=UI-R-CA0-bhk-g-06-0-UI.s1 /CLONE=UI-R-CA0-bhk-g-06-0-UI /FEA=EST /CNT=1 /TID=Rn.60132.1 /TIER=ConsEnd /STK=1 /UG=Rn.60132 /UG_TITLE=EST BF402788 lipid phosphate phosphatase-related protein type 5 Lppr5 310812 NM_001107720 0016020 // membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation 1393734_at AA997025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997025 /DB_XREF=gi:4280788 /DB_XREF=UI-R-C0-hk-a-03-0-UI.s1 /CLONE=UI-R-C0-hk-a-03-0-UI /FEA=EST /CNT=1 /TID=Rn.33068.1 /TIER=ConsEnd /STK=1 /UG=Rn.33068 /UG_TITLE=EST AA997025 1393735_at AI712582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712582 /DB_XREF=gi:5016382 /DB_XREF=UI-R-AF1-aas-b-07-0-UI.s1 /CLONE=UI-R-AF1-aas-b-07-0-UI /FEA=EST /CNT=1 /TID=Rn.41284.1 /TIER=ConsEnd /STK=1 /UG=Rn.41284 /UG_TITLE=EST AI712582 1393736_at BE116820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116820 /DB_XREF=gi:8508925 /DB_XREF=UI-R-BS1-ayf-f-05-0-UI.s1 /CLONE=UI-R-BS1-ayf-f-05-0-UI /FEA=EST /CNT=1 /TID=Rn.52740.1 /TIER=ConsEnd /STK=1 /UG=Rn.52740 /UG_TITLE=EST BE116820 1393737_at AI044560 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044560 /DB_XREF=gi:3291421 /DB_XREF=UI-R-C1-jw-b-03-0-UI.s1 /CLONE=UI-R-C1-jw-b-03-0-UI /FEA=EST /CNT=1 /TID=Rn.20773.1 /TIER=ConsEnd /STK=1 /UG=Rn.20773 /UG_TITLE=EST AI044560 gastrokine 2 Gkn2 297419 NM_001039686 0005576 // extracellular region // inferred from electronic annotation 1393738_s_at AI136864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136864 /DB_XREF=gi:3637641 /DB_XREF=UI-R-C2p-of-d-06-0-UI.s1 /CLONE=UI-R-C2p-of-d-06-0-UI /FEA=EST /CNT=1 /TID=Rn.27247.1 /TIER=ConsEnd /STK=1 /UG=Rn.27247 /UG_TITLE=EST AI136864 malignant fibrous histiocytoma amplified sequence 1 Mfhas1 306508 NM_001107316 0005515 // protein binding // inferred from electronic annotation 1393739_at BE108371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108371 /DB_XREF=gi:8500476 /DB_XREF=UI-R-BS1-ayv-e-04-0-UI.s1 /CLONE=UI-R-BS1-ayv-e-04-0-UI /FEA=EST /CNT=1 /TID=Rn.51463.1 /TIER=ConsEnd /STK=1 /UG=Rn.51463 /UG_TITLE=EST, Weakly similar to S21345 retrovirus-related leucine zipper protein p40 - rat retrotransposon (R.norvegicus) BE108371 1393740_at BI294230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294230 /DB_XREF=gi:14956491 /DB_XREF=UI-R-DK0-cea-c-02-0-UI.s1 /CLONE=UI-R-DK0-cea-c-02-0-UI /FEA=EST /CNT=1 /TID=Rn.79548.1 /TIER=ConsEnd /STK=1 /UG=Rn.79548 /UG_TITLE=EST BI294230 connector enhancer of kinase suppressor of Ras 1 Cnksr1 298545 NM_001039011 0007265 // Ras protein signal transduction // not recorded /// 0007265 // Ras protein signal transduction // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // not recorded 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0030674 // protein binding, bridging // inferred from electronic annotation /// 0030674 // protein binding, bridging // not recorded 1393741_at BE108635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108635 /DB_XREF=gi:8500740 /DB_XREF=UI-R-CA0-axg-f-04-0-UI.s1 /CLONE=UI-R-CA0-axg-f-04-0-UI /FEA=EST /CNT=1 /TID=Rn.51557.1 /TIER=ConsEnd /STK=1 /UG=Rn.51557 /UG_TITLE=EST BE108635 mesoderm posterior 1 homolog (mouse) Mesp1 308766 NM_001107531 0001947 // heart looping // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0003139 // secondary heart field specification // not recorded /// 0003143 // embryonic heart tube morphogenesis // not recorded /// 0003236 // sinus venosus morphogenesis // not recorded /// 0003241 // growth involved in heart morphogenesis // not recorded /// 0003259 // cardioblast anterior-lateral migration // not recorded /// 0003260 // cardioblast migration // not recorded /// 0007369 // gastrulation // not recorded /// 0008078 // mesodermal cell migration // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0035481 // positive regulation of Notch signaling pathway involved in heart induction // not recorded /// 0042662 // negative regulation of mesodermal cell fate specification // not recorded /// 0042664 // negative regulation of endodermal cell fate specification // not recorded /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045747 // positive regulation of Notch signaling pathway // not recorded /// 0048368 // lateral mesoderm development // not recorded /// 0051155 // positive regulation of striated muscle cell differentiation // not recorded /// 0060913 // cardiac cell fate determination // not recorded /// 0060975 // cardioblast migration to the midline involved in heart field formation // not recorded /// 0070368 // positive regulation of hepatocyte differentiation // not recorded /// 0090082 // positive regulation of heart induction by negative regulation of canonical Wnt receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0010843 // promoter binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0035326 // enhancer binding // not recorded 1393742_at BF389603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389603 /DB_XREF=gi:11374438 /DB_XREF=UI-R-CJ0-bfd-f-05-0-UI.s1 /CLONE=UI-R-CJ0-bfd-f-05-0-UI /FEA=EST /CNT=1 /TID=Rn.56972.1 /TIER=ConsEnd /STK=1 /UG=Rn.56972 /UG_TITLE=EST, Weakly similar to I54383 chromosome segregation protein smc1 (H.sapiens) BF389603 structural maintenance of chromosomes 1B Smc1b 300121 NM_001130498 0007062 // sister chromatid cohesion // not recorded /// 0007126 // meiosis // not recorded /// 0051276 // chromosome organization // inferred from electronic annotation 0000775 // chromosome, centromeric region // not recorded /// 0000795 // synaptonemal complex // not recorded /// 0000800 // lateral element // not recorded /// 0005634 // nucleus // not recorded /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1393743_at AI453930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI453930 /DB_XREF=gi:4290170 /DB_XREF=UI-R-BT0-pu-h-06-0-UI.s1 /CLONE=UI-R-BT0-pu-h-06-0-UI /FEA=EST /CNT=1 /TID=Rn.34553.1 /TIER=ConsEnd /STK=1 /UG=Rn.34553 /UG_TITLE=EST AI453930 1393744_at BE110023 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110023 /DB_XREF=gi:8502128 /DB_XREF=UI-R-CA0-axj-b-06-0-UI.s1 /CLONE=UI-R-CA0-axj-b-06-0-UI /FEA=EST /CNT=1 /TID=Rn.51786.1 /TIER=ConsEnd /STK=1 /UG=Rn.51786 /UG_TITLE=EST BE110023 testis-specific serine kinase 2 Tssk2 304181 NM_001012019 0006468 // protein phosphorylation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1393745_at BE118179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118179 /DB_XREF=gi:8510324 /DB_XREF=UI-R-BJ1-azo-b-05-0-UI.s1 /CLONE=UI-R-BJ1-azo-b-05-0-UI /FEA=EST /CNT=1 /TID=Rn.75135.1 /TIER=ConsEnd /STK=1 /UG=Rn.75135 /UG_TITLE=EST, Moderately similar to ORC3_MOUSE ORIGIN RECOGNITION COMPLEX SUBUNIT 3 (ORIGIN RECOGNITION COMPLEX SUBUNIT LATHEO) (M.musculus) BE118179 origin recognition complex, subunit 3-like (yeast) Orc3l 313138 NM_001025282 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded 0000808 // origin recognition complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005664 // nuclear origin of replication recognition complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393746_at BE117730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117730 /DB_XREF=gi:8509835 /DB_XREF=UI-R-BS1-azf-c-07-0-UI.s1 /CLONE=UI-R-BS1-azf-c-07-0-UI /FEA=EST /CNT=1 /TID=Rn.52882.1 /TIER=ConsEnd /STK=1 /UG=Rn.52882 /UG_TITLE=EST BE117730 1393747_at AI009059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009059 /DB_XREF=gi:3222891 /DB_XREF=EST203510 /CLONE=REMBH82 /FEA=EST /CNT=1 /TID=Rn.13875.1 /TIER=ConsEnd /STK=1 /UG=Rn.13875 /UG_TITLE=EST, Moderately similar to PE60 MOUSE PEPTIDE PEC-60 HOMOLOG PRECURSOR (M.musculus) AI009059 serine peptidase inhibitor, Kazal type 4 Spink4 408233 NM_001008871 0042493 // response to drug // inferred from expression pattern 0005615 // extracellular space // traceable author statement /// 0005634 // nucleus // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0004867 // serine-type endopeptidase inhibitor activity // traceable author statement /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1393748_at BF387694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387694 /DB_XREF=gi:11372518 /DB_XREF=UI-R-CA1-bbt-d-10-0-UI.s1 /CLONE=UI-R-CA1-bbt-d-10-0-UI /FEA=EST /CNT=1 /TID=Rn.56580.1 /TIER=ConsEnd /STK=1 /UG=Rn.56580 /UG_TITLE=EST BF387694 tubulin tyrosine ligase-like family, member 11 Ttll11 689746 XM_001071863 /// XM_002726084 0006464 // protein modification process // inferred from electronic annotation 0004835 // tubulin-tyrosine ligase activity // inferred from electronic annotation 1393749_at AI073196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073196 /DB_XREF=gi:3399390 /DB_XREF=UI-R-Y0-mi-h-07-0-UI.s1 /CLONE=UI-R-Y0-mi-h-07-0-UI /FEA=EST /CNT=1 /TID=Rn.21856.1 /TIER=ConsEnd /STK=1 /UG=Rn.21856 /UG_TITLE=ESTs, Weakly similar to DDRT helix-destabilizing protein - rat (R.norvegicus) AI073196 RNA binding motif protein 34 Rbm34 307956 NM_001014015 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1393750_at BI303408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303408 /DB_XREF=gi:14979688 /DB_XREF=UI-R-DQ0-cja-i-17-0-UI.s1 /CLONE=UI-R-DQ0-cja-i-17-0-UI /FEA=EST /CNT=1 /TID=Rn.77445.1 /TIER=ConsEnd /STK=1 /UG=Rn.77445 /UG_TITLE=EST BI303408 G2/M-phase specific E3 ubiquitin ligase G2e3 299002 NM_001106726 0000209 // protein polyubiquitination // not recorded /// 0001824 // blastocyst development // not recorded /// 0006464 // protein modification process // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393751_at AA859029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859029 /DB_XREF=gi:4229297 /DB_XREF=UI-R-A0-ak-b-09-0-UI.s2 /CLONE=UI-R-A0-ak-b-09-0-UI /FEA=EST /CNT=1 /TID=Rn.14876.2 /TIER=ConsEnd /STK=1 /UG=Rn.14876 /UG_TITLE=ESTs AA859029 Fatty acid binding protein 12 Fabp12 499570 NM_001134614 0006810 // transport // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation 1393752_at BE101697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101697 /DB_XREF=gi:8493795 /DB_XREF=UI-R-BO1-aps-b-08-0-UI.s1 /CLONE=UI-R-BO1-aps-b-08-0-UI /FEA=EST /CNT=1 /TID=Rn.68536.1 /TIER=ConsEnd /STK=1 /UG=Rn.68536 /UG_TITLE=EST, Weakly similar to JE0378 DNA (R.norvegicus) BE101697 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0035097 // histone methyltransferase complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042800 // histone methyltransferase activity (H3-K4 specific) // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393753_at BE114265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114265 /DB_XREF=gi:8506370 /DB_XREF=UI-R-BJ1-awk-b-10-0-UI.s1 /CLONE=UI-R-BJ1-awk-b-10-0-UI /FEA=EST /CNT=1 /TID=Rn.52344.1 /TIER=ConsEnd /STK=1 /UG=Rn.52344 /UG_TITLE=EST BE114265 NudC domain containing 1 Nudcd1 362906 NM_001130561 1393754_at BM383480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383480 /DB_XREF=gi:18183533 /DB_XREF=UI-R-DM1-cka-c-06-0-UI.s1 /CLONE=UI-R-DM1-cka-c-06-0-UI /FEA=EST /CNT=1 /TID=Rn.81328.1 /TIER=ConsEnd /STK=1 /UG=Rn.81328 /UG_TITLE=EST BM383480 TBC1 domain family, member 1 Tbc1d1 360937 XM_001071842 /// XM_341215 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation /// 0032880 // regulation of protein localization // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1393755_at BE109926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109926 /DB_XREF=gi:8502031 /DB_XREF=UI-R-BJ1-aum-a-02-0-UI.s1 /CLONE=UI-R-BJ1-aum-a-02-0-UI /FEA=EST /CNT=1 /TID=Rn.43971.2 /TIER=ConsEnd /STK=1 /UG=Rn.43971 /UG_TITLE=ESTs, Highly similar to MPV1 MOUSE MPV17 PROTEIN (M.musculus) BE109926 phosphoinositide-3-kinase, catalytic, delta polypeptide Pik3cd 366508 NM_001108978 0001782 // B cell homeostasis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0042113 // B cell activation // not recorded /// 0046854 // phosphoinositide phosphorylation // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation 0005942 // phosphoinositide 3-kinase complex // inferred from electronic annotation 0004428 // inositol or phosphatidylinositol kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0046934 // phosphatidylinositol-4,5-bisphosphate 3-kinase activity // inferred from electronic annotation 1393756_at AI060002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060002 /DB_XREF=gi:3333779 /DB_XREF=UI-R-C1-kz-c-05-0-UI.s1 /CLONE=UI-R-C1-kz-c-05-0-UI /FEA=EST /CNT=1 /TID=Rn.19340.2 /TIER=ConsEnd /STK=1 /UG=Rn.19340 /UG_TITLE=ESTs AI060002 dentin matrix acidic phosphoprotein 1 Dmp1 25312 NM_203493 0001503 // ossification // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // not recorded /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030500 // regulation of bone mineralization // traceable author statement /// 0031214 // biomineral tissue development // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from direct assay /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0050840 // extracellular matrix binding // not recorded 1393757_at BE105343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105343 /DB_XREF=gi:8497445 /DB_XREF=UI-R-BX0-asd-e-11-0-UI.s1 /CLONE=UI-R-BX0-asd-e-11-0-UI /FEA=EST /CNT=1 /TID=Rn.50748.1 /TIER=ConsEnd /STK=1 /UG=Rn.50748 /UG_TITLE=EST BE105343 NEDD4 binding protein 2-like 1 N4bp2l1 498131 NM_001035222 0001906 // cell killing // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation 1393758_at AI535253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535253 /DB_XREF=gi:4449388 /DB_XREF=UI-R-C3-st-d-11-0-UI.s1 /CLONE=UI-R-C3-st-d-11-0-UI /FEA=EST /CNT=1 /TID=Rn.76693.1 /TIER=ConsEnd /STK=1 /UG=Rn.76693 /UG_TITLE=EST AI535253 tetratricopeptide repeat domain 14 Ttc14 310314 NM_001107666 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1393759_at BM385963 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385963 /DB_XREF=gi:18186016 /DB_XREF=UI-R-DN1-ckf-o-18-0-UI.s1 /CLONE=UI-R-DN1-ckf-o-18-0-UI /FEA=EST /CNT=1 /TID=Rn.81681.1 /TIER=ConsEnd /STK=1 /UG=Rn.81681 /UG_TITLE=EST BM385963 1393760_at BE116401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116401 /DB_XREF=gi:8508506 /DB_XREF=UI-R-BS1-ayc-g-12-0-UI.s1 /CLONE=UI-R-BS1-ayc-g-12-0-UI /FEA=EST /CNT=1 /TID=Rn.53860.2 /TIER=ConsEnd /STK=1 /UG=Rn.53860 /UG_TITLE=ESTs BE116401 tryptophanyl tRNA synthetase 2 (mitochondrial) Wars2 690654 NM_001168641 0001570 // vasculogenesis // not recorded /// 0006436 // tryptophanyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004830 // tryptophan-tRNA ligase activity // inferred from electronic annotation /// 0004830 // tryptophan-tRNA ligase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1393761_at BF390194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390194 /DB_XREF=gi:11375080 /DB_XREF=UI-R-CA1-bcm-c-06-0-UI.s1 /CLONE=UI-R-CA1-bcm-c-06-0-UI /FEA=EST /CNT=1 /TID=Rn.57113.1 /TIER=ConsEnd /STK=1 /UG=Rn.57113 /UG_TITLE=EST BF390194 zinc finger protein 316 Zfp316 304293 NM_001107121 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393762_at AA901054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901054 /DB_XREF=gi:4233552 /DB_XREF=UI-R-A1-dv-f-04-0-UI.s1 /CLONE=UI-R-A1-dv-f-04-0-UI /FEA=EST /CNT=1 /TID=Rn.32546.1 /TIER=ConsEnd /STK=1 /UG=Rn.32546 /UG_TITLE=EST, Weakly similar to TF1A MOUSE TRANSCRIPTION INTERMEDIARY FACTOR 1-ALPHA (M.musculus) AA901054 p300/CBP-associated factor Pcaf 301164 NM_001024252 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0018076 // N-terminal peptidyl-lysine acetylation // inferred from electronic annotation /// 0018393 // internal peptidyl-lysine acetylation // inferred from electronic annotation /// 0018394 // peptidyl-lysine acetylation // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0000123 // histone acetyltransferase complex // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0016585 // chromatin remodeling complex // inferred from electronic annotation /// 0031672 // A band // inferred from electronic annotation /// 0031674 // I band // inferred from electronic annotation /// 0042641 // actomyosin // inferred from electronic annotation 0003712 // transcription cofactor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0004468 // lysine N-acetyltransferase activity // inferred from electronic annotation /// 0004861 // cyclin-dependent protein kinase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016407 // acetyltransferase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // inferred from electronic annotation 1393763_at BF388083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388083 /DB_XREF=gi:11372907 /DB_XREF=UI-R-CA1-bby-a-10-0-UI.s1 /CLONE=UI-R-CA1-bby-a-10-0-UI /FEA=EST /CNT=1 /TID=Rn.56678.1 /TIER=ConsEnd /STK=1 /UG=Rn.56678 /UG_TITLE=EST BF388083 1393764_at AI045104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045104 /DB_XREF=gi:3291923 /DB_XREF=UI-R-C1-kg-a-06-0-UI.s1 /CLONE=UI-R-C1-kg-a-06-0-UI /FEA=EST /CNT=1 /TID=Rn.1511.2 /TIER=ConsEnd /STK=1 /UG=Rn.1511 /UG_TITLE=ESTs AI045104 1393765_at AI043706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043706 /DB_XREF=gi:3290441 /DB_XREF=UI-R-C0-jl-h-01-0-UI.s1 /CLONE=UI-R-C0-jl-h-01-0-UI /FEA=EST /CNT=1 /TID=Rn.18695.1 /TIER=ConsEnd /STK=1 /UG=Rn.18695 /UG_TITLE=EST AI043706 1393766_at AI112375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112375 /DB_XREF=gi:3512324 /DB_XREF=UI-R-Y0-mn-e-04-0-UI.s1 /CLONE=UI-R-Y0-mn-e-04-0-UI /FEA=EST /CNT=1 /TID=Rn.23943.2 /TIER=ConsEnd /STK=1 /UG=Rn.23943 /UG_TITLE=ESTs AI112375 1393767_at AA866293 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866293 /DB_XREF=gi:4229403 /DB_XREF=UI-R-A0-ac-f-03-0-UI.s3 /CLONE=UI-R-A0-ac-f-03-0-UI /FEA=EST /CNT=1 /TID=Rn.3046.1 /TIER=ConsEnd /STK=1 /UG=Rn.3046 /UG_TITLE=EST AA866293 1393768_at AA818405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818405 /DB_XREF=gi:4228202 /DB_XREF=UI-R-A0-au-e-03-0-UI.s1 /CLONE=UI-R-A0-au-e-03-0-UI /FEA=EST /CNT=1 /TID=Rn.34073.1 /TIER=ConsEnd /STK=1 /UG=Rn.34073 /UG_TITLE=EST AA818405 1393769_at AI501690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501690 /DB_XREF=gi:4399541 /DB_XREF=UI-R-C0-iv-h-02-0-UI.s1 /CLONE=UI-R-C0-iv-h-02-0-UI /FEA=EST /CNT=1 /TID=Rn.37821.1 /TIER=ConsEnd /STK=1 /UG=Rn.37821 /UG_TITLE=EST AI501690 1393770_at AA858604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858604 /DB_XREF=gi:4229936 /DB_XREF=UI-R-E0-bq-a-04-0-UI.s1 /CLONE=UI-R-E0-bq-a-04-0-UI /FEA=EST /CNT=1 /TID=Rn.43219.1 /TIER=ConsEnd /STK=1 /UG=Rn.43219 /UG_TITLE=EST AA858604 1393771_at AI011836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011836 /DB_XREF=gi:4133506 /DB_XREF=EST206287 /CLONE=RPLAP46 /FEA=EST /CNT=1 /TID=Rn.30648.1 /TIER=ConsEnd /STK=1 /UG=Rn.30648 /UG_TITLE=EST AI011836 secretoglobin, family 3A, member 1 Scgb3a1 338418 NM_001013180 0005576 // extracellular region // traceable author statement 1393772_at AW523217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523217 /DB_XREF=gi:7165602 /DB_XREF=UI-R-BO0-ahs-f-11-0-UI.s1 /CLONE=UI-R-BO0-ahs-f-11-0-UI /FEA=EST /CNT=1 /TID=Rn.45588.1 /TIER=ConsEnd /STK=1 /UG=Rn.45588 /UG_TITLE=EST AW523217 1393773_at BM387914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387914 /DB_XREF=gi:18187967 /DB_XREF=UI-R-CN1-cjk-b-06-0-UI.s1 /CLONE=UI-R-CN1-cjk-b-06-0-UI /FEA=EST /CNT=1 /TID=Rn.82112.1 /TIER=ConsEnd /STK=1 /UG=Rn.82112 /UG_TITLE=EST BM387914 keratin 25 Krt25 303519 NM_001008822 0031069 // hair follicle morphogenesis // inferred from electronic annotation /// 0031069 // hair follicle morphogenesis // not recorded /// 0045109 // intermediate filament organization // inferred from electronic annotation /// 0045109 // intermediate filament organization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005882 // intermediate filament // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393774_at BF406434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406434 /DB_XREF=gi:11394409 /DB_XREF=UI-R-CA1-bjf-p-12-0-UI.s1 /CLONE=UI-R-CA1-bjf-p-12-0-UI /FEA=EST /CNT=1 /TID=Rn.71400.1 /TIER=ConsEnd /STK=1 /UG=Rn.71400 /UG_TITLE=EST BF406434 transcription factor 20 Tcf20 366964 NM_001130574 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0030528 // transcription regulator activity // not recorded 1393775_at BI275777 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275777 /DB_XREF=gi:14920024 /DB_XREF=UI-R-CX0-bxg-e-05-0-UI.s1 /CLONE=UI-R-CX0-bxg-e-05-0-UI /FEA=EST /CNT=1 /TID=Rn.77506.1 /TIER=ConsEnd /STK=1 /UG=Rn.77506 /UG_TITLE=EST BI275777 Nedd4 binding protein 3 N4bp3 303112 NM_001033893 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 1393776_at AA955277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955277 /DB_XREF=gi:4237639 /DB_XREF=UI-R-A1-ej-b-12-0-UI.s1 /CLONE=UI-R-A1-ej-b-12-0-UI /FEA=EST /CNT=1 /TID=Rn.32758.1 /TIER=ConsEnd /STK=1 /UG=Rn.32758 /UG_TITLE=EST AA955277 1393777_at AA998104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998104 /DB_XREF=gi:4287543 /DB_XREF=UI-R-C0-hx-b-04-0-UI.s1 /CLONE=UI-R-C0-hx-b-04-0-UI /FEA=EST /CNT=1 /TID=Rn.76607.1 /TIER=ConsEnd /STK=1 /UG=Rn.76607 /UG_TITLE=EST AA998104 1393778_at BE120676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120676 /DB_XREF=gi:8512781 /DB_XREF=UI-R-CA0-bay-c-05-0-UI.s1 /CLONE=UI-R-CA0-bay-c-05-0-UI /FEA=EST /CNT=1 /TID=Rn.69719.1 /TIER=ConsEnd /STK=1 /UG=Rn.69719 /UG_TITLE=EST, Moderately similar to T44500 fls485 protein (H.sapiens) BE120676 similar to Fls485 protein RGD1562010 500286 XM_001078533 /// XM_002729443 0006457 // protein folding // inferred from electronic annotation 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1393779_x_at BI303187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303187 /DB_XREF=gi:14979467 /DB_XREF=UI-R-DQ0-ciz-g-24-0-UI.s1 /CLONE=UI-R-DQ0-ciz-g-24-0-UI /FEA=EST /CNT=1 /TID=Rn.77433.2 /TIER=ConsEnd /STK=1 /UG=Rn.77433 /UG_TITLE=ESTs, Highly similar to SYNAPTONEMAL COMPLEX PROTEIN SC65 (R.norvegicus) BI303187 synaptonemal complex protein SC65 Sc65 59101 NM_021581 0000795 // synaptonemal complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1393780_at AA924380 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924380 /DB_XREF=gi:4234519 /DB_XREF=UI-R-A1-ds-a-08-0-UI.s1 /CLONE=UI-R-A1-ds-a-08-0-UI /FEA=EST /CNT=1 /TID=Rn.15308.1 /TIER=ConsEnd /STK=1 /UG=Rn.15308 /UG_TITLE=ESTs AA924380 1393781_at BM386897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386897 /DB_XREF=gi:18186950 /DB_XREF=UI-R-CN1-cjh-h-16-0-UI.s1 /CLONE=UI-R-CN1-cjh-h-16-0-UI /FEA=EST /CNT=1 /TID=Rn.81880.1 /TIER=ConsEnd /STK=1 /UG=Rn.81880 /UG_TITLE=EST BM386897 1393782_at BF396790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396790 /DB_XREF=gi:11381771 /DB_XREF=UI-R-BS2-bev-b-08-0-UI.s1 /CLONE=UI-R-BS2-bev-b-08-0-UI /FEA=EST /CNT=1 /TID=Rn.58682.1 /TIER=ConsEnd /STK=1 /UG=Rn.58682 /UG_TITLE=EST BF396790 1393783_at AI706662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI706662 /DB_XREF=gi:4994562 /DB_XREF=UI-R-AD1-zl-c-01-0-UI.s1 /CLONE=UI-R-AD1-zl-c-01-0-UI /FEA=EST /CNT=1 /TID=Rn.74309.1 /TIER=ConsEnd /STK=1 /UG=Rn.74309 /UG_TITLE=EST AI706662 mKIAA0868 protein-like /// similar to contactin associated protein-like 2 isoform a LOC100364190 /// LOC500105 100364190 /// 500105 XM_002726327 /// XR_086230 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation 1393784_at BI284190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284190 /DB_XREF=gi:14936646 /DB_XREF=UI-R-CX0s-ccn-c-07-0-UI.s1 /CLONE=UI-R-CX0s-ccn-c-07-0-UI /FEA=EST /CNT=1 /TID=Rn.23175.2 /TIER=ConsEnd /STK=1 /UG=Rn.23175 /UG_TITLE=ESTs BI284190 1393785_at BE110326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110326 /DB_XREF=gi:8502431 /DB_XREF=UI-R-CA0-axl-f-09-0-UI.s1 /CLONE=UI-R-CA0-axl-f-09-0-UI /FEA=EST /CNT=1 /TID=Rn.51877.1 /TIER=ConsEnd /STK=1 /UG=Rn.51877 /UG_TITLE=EST BE110326 Similar to hypothetical protein FLJ22527 RGD1305311 316616 XM_001066515 /// XM_237386 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1393786_at BG373829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373829 /DB_XREF=gi:13270366 /DB_XREF=UI-R-CV1-bsk-d-06-0-UI.s1 /CLONE=UI-R-CV1-bsk-d-06-0-UI /FEA=EST /CNT=1 /TID=Rn.76518.1 /TIER=ConsEnd /STK=1 /UG=Rn.76518 /UG_TITLE=EST BG373829 1393787_at BI278215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278215 /DB_XREF=gi:14924842 /DB_XREF=UI-R-CZ0-bye-g-11-0-UI.s1 /CLONE=UI-R-CZ0-bye-g-11-0-UI /FEA=EST /CNT=1 /TID=Rn.77769.1 /TIER=ConsEnd /STK=1 /UG=Rn.77769 /UG_TITLE=EST BI278215 1393788_at BI283606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283606 /DB_XREF=gi:14935522 /DB_XREF=UI-R-DA0-bze-e-10-0-UI.s1 /CLONE=UI-R-DA0-bze-e-10-0-UI /FEA=EST /CNT=1 /TID=Rn.78406.1 /TIER=ConsEnd /STK=1 /UG=Rn.78406 /UG_TITLE=EST, Weakly similar to CYTD_HUMAN CYSTATIN D PRECURSOR (H.sapiens) BI283606 cystatin D Cst5 366219 NM_001108961 0002062 // chondrocyte differentiation // not recorded /// 0048469 // cell maturation // not recorded 0005576 // extracellular region // not recorded /// 0005829 // cytosol // not recorded 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0004869 // cysteine-type endopeptidase inhibitor activity // not recorded /// 0005515 // protein binding // not recorded /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1393789_at BI291152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291152 /DB_XREF=gi:14950424 /DB_XREF=UI-R-DK0-cgh-b-11-0-UI.s1 /CLONE=UI-R-DK0-cgh-b-11-0-UI /FEA=EST /CNT=1 /TID=Rn.79232.1 /TIER=ConsEnd /STK=1 /UG=Rn.79232 /UG_TITLE=EST BI291152 1393790_at AI548958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548958 /DB_XREF=gi:4466446 /DB_XREF=UI-R-C3-tw-f-09-0-UI.s1 /CLONE=UI-R-C3-tw-f-09-0-UI /FEA=EST /CNT=1 /TID=Rn.65941.1 /TIER=ConsEnd /STK=1 /UG=Rn.65941 /UG_TITLE=EST AI548958 HRAS-like suppressor Hrasls 288025 NM_001105871 0005641 // nuclear envelope lumen // inferred from electronic annotation /// 0005641 // nuclear envelope lumen // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1393791_at AI044622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044622 /DB_XREF=gi:3291483 /DB_XREF=UI-R-C1-kc-g-02-0-UI.s1 /CLONE=UI-R-C1-kc-g-02-0-UI /FEA=EST /CNT=1 /TID=Rn.15967.1 /TIER=ConsEnd /STK=1 /UG=Rn.15967 /UG_TITLE=EST AI044622 T cell receptor associated transmembrane adaptor 1 Trat1 498075 NM_001037981 0001920 // negative regulation of receptor recycling // inferred from electronic annotation /// 0001920 // negative regulation of receptor recycling // not recorded /// 0050850 // positive regulation of calcium-mediated signaling // inferred from electronic annotation /// 0050850 // positive regulation of calcium-mediated signaling // not recorded /// 0050862 // positive regulation of T cell receptor signaling pathway // inferred from electronic annotation /// 0050862 // positive regulation of T cell receptor signaling pathway // not recorded /// 0051051 // negative regulation of transport // inferred from electronic annotation /// 0051051 // negative regulation of transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042101 // T cell receptor complex // inferred from electronic annotation /// 0042101 // T cell receptor complex // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0046934 // phosphatidylinositol-4,5-bisphosphate 3-kinase activity // not recorded 1393792_at AI029501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029501 /DB_XREF=gi:4298997 /DB_XREF=UI-R-C0-iw-g-05-0-UI.s1 /CLONE=UI-R-C0-iw-g-05-0-UI /FEA=EST /CNT=1 /TID=Rn.65718.1 /TIER=ConsEnd /STK=1 /UG=Rn.65718 /UG_TITLE=EST AI029501 1393793_at AW524669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524669 /DB_XREF=gi:7167054 /DB_XREF=UI-R-BO0-aib-a-09-0-UI.s1 /CLONE=UI-R-BO0-aib-a-09-0-UI /FEA=EST /CNT=1 /TID=Rn.45901.1 /TIER=ConsEnd /STK=1 /UG=Rn.45901 /UG_TITLE=EST AW524669 1393794_at BI284634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284634 /DB_XREF=gi:14937483 /DB_XREF=UI-R-DE0-cac-d-07-0-UI.s1 /CLONE=UI-R-DE0-cac-d-07-0-UI /FEA=EST /CNT=1 /TID=Rn.78500.1 /TIER=ConsEnd /STK=1 /UG=Rn.78500 /UG_TITLE=EST BI284634 Tetratricopeptide repeat domain 21B Ttc21b 295654 NM_001191737 /// XM_001056795 /// XM_229983 0005488 // binding // inferred from electronic annotation 1393795_at BG377397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377397 /DB_XREF=gi:13301869 /DB_XREF=UI-R-CU0-buy-a-03-0-UI.s1 /CLONE=UI-R-CU0-buy-a-03-0-UI /FEA=EST /CNT=1 /TID=Rn.66489.1 /TIER=ConsEnd /STK=1 /UG=Rn.66489 /UG_TITLE=EST BG377397 zinc finger E-box binding homeobox 2 Zeb2 311071 NM_001033701 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001756 // somitogenesis // not recorded /// 0001843 // neural tube closure // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0021846 // cell proliferation in forebrain // inferred from electronic annotation /// 0021846 // cell proliferation in forebrain // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0030177 // positive regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0043507 // positive regulation of JUN kinase activity // inferred from electronic annotation /// 0043507 // positive regulation of JUN kinase activity // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048598 // embryonic morphogenesis // inferred from electronic annotation /// 0048598 // embryonic morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1393796_at BG375986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375986 /DB_XREF=gi:13300458 /DB_XREF=UI-R-CS0-bts-a-03-0-UI.s1 /CLONE=UI-R-CS0-bts-a-03-0-UI /FEA=EST /CNT=1 /TID=Rn.66357.1 /TIER=ConsEnd /STK=1 /UG=Rn.66357 /UG_TITLE=EST BG375986 centrosomal protein 152 Cep152 311391 XM_002726171 /// XM_230555 0005829 // cytosol // not recorded 1393797_at AI113159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113159 /DB_XREF=gi:3513108 /DB_XREF=UI-R-C2p-np-c-01-0-UI.s1 /CLONE=UI-R-C2p-np-c-01-0-UI /FEA=EST /CNT=1 /TID=Rn.26928.1 /TIER=ConsEnd /STK=1 /UG=Rn.26928 /UG_TITLE=EST AI113159 1393798_at BF398451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398451 /DB_XREF=gi:11383441 /DB_XREF=UI-R-BS2-bep-a-04-0-UI.s1 /CLONE=UI-R-BS2-bep-a-04-0-UI /FEA=EST /CNT=1 /TID=Rn.70873.1 /TIER=ConsEnd /STK=1 /UG=Rn.70873 /UG_TITLE=EST, Highly similar to ATRX MOUSE TRANSCRIPTIONAL REGULATOR ATRX (M.musculus) BF398451 alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) Atrx 246284 NM_001105757 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded 0000228 // nuclear chromosome // inferred from electronic annotation /// 0000228 // nuclear chromosome // not recorded /// 0000792 // heterochromatin // inferred from electronic annotation /// 0000792 // heterochromatin // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0070087 // chromo shadow domain binding // inferred from electronic annotation /// 0070087 // chromo shadow domain binding // not recorded 1393799_at BI303989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303989 /DB_XREF=gi:14980269 /DB_XREF=UI-R-DR0-cjc-m-05-0-UI.s1 /CLONE=UI-R-DR0-cjc-m-05-0-UI /FEA=EST /CNT=1 /TID=Rn.77473.1 /TIER=ConsEnd /STK=1 /UG=Rn.77473 /UG_TITLE=EST BI303989 Unc-5 homolog B (C. elegans) Unc5b 60630 NM_022207 0006915 // apoptosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // inferred from direct assay 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005042 // netrin receptor activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation 1393800_at AW526472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526472 /DB_XREF=gi:7168886 /DB_XREF=UI-R-BO1-aix-e-02-0-UI.s1 /CLONE=UI-R-BO1-aix-e-02-0-UI /FEA=EST /CNT=1 /TID=Rn.46204.1 /TIER=ConsEnd /STK=1 /UG=Rn.46204 /UG_TITLE=EST AW526472 armadillo repeat containing, X-linked 5 LOC100361182 100361182 XM_002727643 /// XM_002730288 0005488 // binding // inferred from electronic annotation 1393801_at AI111841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111841 /DB_XREF=gi:3511790 /DB_XREF=UI-R-Y0-mp-b-04-0-UI.s1 /CLONE=UI-R-Y0-mp-b-04-0-UI /FEA=EST /CNT=1 /TID=Rn.65775.1 /TIER=ConsEnd /STK=1 /UG=Rn.65775 /UG_TITLE=EST, Highly similar to P23 MOUSE HSP90 CO-CHAPERONE (M.musculus) AI111841 prostaglandin E synthase 3-like 1 Ptges3l1 367808 NM_001014272 0001516 // prostaglandin biosynthetic process // not recorded /// 0005978 // glycogen biosynthetic process // not recorded /// 0008283 // cell proliferation // not recorded /// 0042921 // glucocorticoid receptor signaling pathway // not recorded /// 0043588 // skin development // not recorded /// 0060430 // lung saccule development // not recorded /// 0070389 // chaperone cofactor-dependent protein refolding // not recorded 0005697 // telomerase holoenzyme complex // not recorded /// 0005829 // cytosol // not recorded 0003720 // telomerase activity // not recorded /// 0005515 // protein binding // not recorded /// 0050220 // prostaglandin-E synthase activity // not recorded /// 0051082 // unfolded protein binding // not recorded 1393802_x_at BE102118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102118 /DB_XREF=gi:8494217 /DB_XREF=UI-R-BT1-aqj-e-11-0-UI.s1 /CLONE=UI-R-BT1-aqj-e-11-0-UI /FEA=EST /CNT=1 /TID=Rn.68598.1 /TIER=ConsEnd /STK=1 /UG=Rn.68598 /UG_TITLE=EST BE102118 germ cell associated 1 Gsg1 312793 NM_001013166 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0070063 // RNA polymerase binding // not recorded 1393803_at BF398167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398167 /DB_XREF=gi:11383153 /DB_XREF=UI-R-BS2-ben-b-12-0-UI.s1 /CLONE=UI-R-BS2-ben-b-12-0-UI /FEA=EST /CNT=1 /TID=Rn.19029.1 /TIER=ConsEnd /STK=1 /UG=Rn.19029 /UG_TITLE=ESTs BF398167 caspase 8 associated protein 2 Casp8ap2 313128 NM_001107921 0006919 // activation of caspase activity // not recorded /// 0008625 // induction of apoptosis via death domain receptors // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008656 // caspase activator activity // not recorded /// 0016505 // apoptotic protease activator activity // not recorded /// 0042802 // identical protein binding // not recorded 1393804_at BF388537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388537 /DB_XREF=gi:11373361 /DB_XREF=UI-R-CA1-bda-f-11-0-UI.s1 /CLONE=UI-R-CA1-bda-f-11-0-UI /FEA=EST /CNT=1 /TID=Rn.34473.2 /TIER=ConsEnd /STK=1 /UG=Rn.34473 /UG_TITLE=ESTs BF388537 centrosome and spindle pole associated protein 1 Cspp1 362472 NM_001191864 /// XM_001060285 /// XM_342793 1393805_at BE106389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106389 /DB_XREF=gi:8498491 /DB_XREF=UI-R-BT1-asv-d-07-0-UI.s1 /CLONE=UI-R-BT1-asv-d-07-0-UI /FEA=EST /CNT=1 /TID=Rn.50939.1 /TIER=ConsEnd /STK=1 /UG=Rn.50939 /UG_TITLE=EST BE106389 splA/ryanodine receptor domain and SOCS box containing 1 Spsb1 313722 NM_001107994 0023034 // intracellular signaling pathway // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1393806_at BE107400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107400 /DB_XREF=gi:8499505 /DB_XREF=UI-R-BS1-ayt-c-08-0-UI.s1 /CLONE=UI-R-BS1-ayt-c-08-0-UI /FEA=EST /CNT=1 /TID=Rn.51172.1 /TIER=ConsEnd /STK=1 /UG=Rn.51172 /UG_TITLE=EST BE107400 MANSC domain containing 1 Mansc1 690606 NM_001109603 1393807_at BF396605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396605 /DB_XREF=gi:11381580 /DB_XREF=UI-R-BS2-bea-a-11-0-UI.s1 /CLONE=UI-R-BS2-bea-a-11-0-UI /FEA=EST /CNT=1 /TID=Rn.58639.1 /TIER=ConsEnd /STK=1 /UG=Rn.58639 /UG_TITLE=EST BF396605 1393808_at AW527783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527783 /DB_XREF=gi:7170237 /DB_XREF=UI-R-BO1-ajk-e-11-0-UI.s1 /CLONE=UI-R-BO1-ajk-e-11-0-UI /FEA=EST /CNT=1 /TID=Rn.67886.1 /TIER=ConsEnd /STK=1 /UG=Rn.67886 /UG_TITLE=EST AW527783 fatty acid 2-hydroxylase Fa2h 307855 NM_001135583 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393809_at BE115919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115919 /DB_XREF=gi:8508024 /DB_XREF=UI-R-BS1-axx-d-09-0-UI.s1 /CLONE=UI-R-BS1-axx-d-09-0-UI /FEA=EST /CNT=1 /TID=Rn.69382.1 /TIER=ConsEnd /STK=1 /UG=Rn.69382 /UG_TITLE=EST, Highly similar to S71821 probable interleukin 1 signal-transducing protein TRAF6 (H.sapiens) BE115919 Tnf receptor-associated factor 6 Traf6 311245 NM_001107754 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000209 // protein polyubiquitination // inferred from electronic annotation /// 0000209 // protein polyubiquitination // not recorded /// 0001503 // ossification // inferred from electronic annotation /// 0001503 // ossification // not recorded /// 0001843 // neural tube closure // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0002726 // positive regulation of T cell cytokine production // inferred from electronic annotation /// 0002726 // positive regulation of T cell cytokine production // not recorded /// 0006915 // apoptosis // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0006955 // immune response // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded /// 0007249 // I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0007250 // activation of NF-kappaB-inducing kinase activity // inferred from electronic annotation /// 0007250 // activation of NF-kappaB-inducing kinase activity // not recorded /// 0007254 // JNK cascade // inferred from mutant phenotype /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from mutant phenotype /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // inferred from electronic annotation /// 0019886 // antigen processing and presentation of exogenous peptide antigen via MHC class II // not recorded /// 0030316 // osteoclast differentiation // not recorded /// 0030316 // osteoclast differentiation // inferred from electronic annotation /// 0031293 // membrane protein intracellular domain proteolysis // not recorded /// 0031666 // positive regulation of lipopolysaccharide-mediated signaling pathway // inferred from electronic annotation /// 0031666 // positive regulation of lipopolysaccharide-mediated signaling pathway // not recorded /// 0032147 // activation of protein kinase activity // not recorded /// 0032147 // activation of protein kinase activity // inferred from electronic annotation /// 0032743 // positive regulation of interleukin-2 production // inferred from electronic annotation /// 0032743 // positive regulation of interleukin-2 production // not recorded /// 0042088 // T-helper 1 type immune response // inferred from electronic annotation /// 0042088 // T-helper 1 type immune response // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043011 // myeloid dendritic cell differentiation // inferred from electronic annotation /// 0043011 // myeloid dendritic cell differentiation // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0045084 // positive regulation of interleukin-12 biosynthetic process // inferred from electronic annotation /// 0045084 // positive regulation of interleukin-12 biosynthetic process // not recorded /// 0045410 // positive regulation of interleukin-6 biosynthetic process // inferred from electronic annotation /// 0045410 // positive regulation of interleukin-6 biosynthetic process // not recorded /// 0045453 // bone resorption // inferred from electronic annotation /// 0045453 // bone resorption // not recorded /// 0045672 // positive regulation of osteoclast differentiation // inferred from electronic annotation /// 0045672 // positive regulation of osteoclast differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046849 // bone remodeling // not recorded /// 0046849 // bone remodeling // inferred from electronic annotation /// 0048468 // cell development // inferred from electronic annotation /// 0048468 // cell development // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0050852 // T cell receptor signaling pathway // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // not recorded /// 0051023 // regulation of immunoglobulin secretion // inferred from electronic annotation /// 0051023 // regulation of immunoglobulin secretion // not recorded /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051865 // protein autoubiquitination // inferred from electronic annotation /// 0051865 // protein autoubiquitination // not recorded /// 0070498 // interleukin-1-mediated signaling pathway // inferred from electronic annotation /// 0070498 // interleukin-1-mediated signaling pathway // not recorded /// 0070534 // protein K63-linked ubiquitination // inferred from electronic annotation /// 0070534 // protein K63-linked ubiquitination // not recorded /// 0070555 // response to interleukin-1 // inferred from electronic annotation /// 0070555 // response to interleukin-1 // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005938 // cell cortex // inferred from electronic annotation /// 0010008 // endosome membrane // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0031435 // mitogen-activated protein kinase kinase kinase binding // inferred from electronic annotation /// 0031435 // mitogen-activated protein kinase kinase kinase binding // not recorded /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded /// 0043422 // protein kinase B binding // inferred from electronic annotation /// 0043422 // protein kinase B binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded 1393810_at BF390909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390909 /DB_XREF=gi:11375756 /DB_XREF=UI-R-CA1-bce-a-03-0-UI.s1 /CLONE=UI-R-CA1-bce-a-03-0-UI /FEA=EST /CNT=1 /TID=Rn.70310.1 /TIER=ConsEnd /STK=1 /UG=Rn.70310 /UG_TITLE=EST, Moderately similar to Y893_HUMAN Hypothetical protein KIAA0893 (H.sapiens) BF390909 WD repeat domain 47 Wdr47 310785 NM_001100702 1393811_at BF397269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397269 /DB_XREF=gi:11382252 /DB_XREF=UI-R-BS2-bek-d-06-0-UI.s1 /CLONE=UI-R-BS2-bek-d-06-0-UI /FEA=EST /CNT=1 /TID=Rn.70770.1 /TIER=ConsEnd /STK=1 /UG=Rn.70770 /UG_TITLE=EST BF397269 similar to putative repair and recombination helicase RAD26L RGD1561537 361197 XM_001058999 /// XM_002725217 /// XM_002728449 /// XM_341480 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation 1393812_at BF406779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406779 /DB_XREF=gi:11394754 /DB_XREF=UI-R-BJ2-bpp-a-09-0-UI.s1 /CLONE=UI-R-BJ2-bpp-a-09-0-UI /FEA=EST /CNT=1 /TID=Rn.71418.1 /TIER=ConsEnd /STK=1 /UG=Rn.71418 /UG_TITLE=EST BF406779 1393813_at BF388771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388771 /DB_XREF=gi:11373595 /DB_XREF=UI-R-BS2-bde-d-03-0-UI.s1 /CLONE=UI-R-BS2-bde-d-03-0-UI /FEA=EST /CNT=1 /TID=Rn.75377.1 /TIER=ConsEnd /STK=1 /UG=Rn.75377 /UG_TITLE=EST, Highly similar to JW0059 mtprd protein - mouse (M.musculus) BF388771 tetratricopeptide repeat domain 3 Ttc3 360702 NM_001108315 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0010771 // negative regulation of cell morphogenesis involved in differentiation // not recorded /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0051789 // response to protein stimulus // not recorded /// 0070936 // protein K48-linked ubiquitination // not recorded 0005634 // nucleus // not recorded /// 0005773 // vacuole // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393814_at BF405433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405433 /DB_XREF=gi:11393408 /DB_XREF=UI-R-CA1-bix-e-09-0-UI.s1 /CLONE=UI-R-CA1-bix-e-09-0-UI /FEA=EST /CNT=1 /TID=Rn.75824.1 /TIER=ConsEnd /STK=1 /UG=Rn.75824 /UG_TITLE=EST, Moderately similar to zonadhesin (Mus musculus) (M.musculus) BF405433 Zonadhesin Zan 304379 NM_001107134 0016020 // membrane // inferred from electronic annotation 1393815_at BM387050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387050 /DB_XREF=gi:18187103 /DB_XREF=UI-R-CN1-cji-c-22-0-UI.s1 /CLONE=UI-R-CN1-cji-c-22-0-UI /FEA=EST /CNT=1 /TID=Rn.81917.1 /TIER=ConsEnd /STK=1 /UG=Rn.81917 /UG_TITLE=EST BM387050 NMDA receptor regulated 2 Narg2 691379 NM_001191108 /// XM_001075498 /// XM_002727086 0005634 // nucleus // not recorded 1393816_at AI555801 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555801 /DB_XREF=gi:4488164 /DB_XREF=UI-R-C2p-qz-d-06-0-UI.s1 /CLONE=UI-R-C2p-qz-d-06-0-UI /FEA=EST /CNT=1 /TID=Rn.39332.1 /TIER=ConsEnd /STK=1 /UG=Rn.39332 /UG_TITLE=EST AI555801 hypothetical protein LOC689399 LOC689399 689399 XM_001070657 /// XM_002725457 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1393817_at AI070991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070991 /DB_XREF=gi:3397242 /DB_XREF=UI-R-C2-na-g-01-0-UI.s1 /CLONE=UI-R-C2-na-g-01-0-UI /FEA=EST /CNT=1 /TID=Rn.19905.1 /TIER=ConsEnd /STK=1 /UG=Rn.19905 /UG_TITLE=EST AI070991 1393818_s_at BE102234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102234 /DB_XREF=gi:8494333 /DB_XREF=UI-R-BT1-aqk-a-09-0-UI.s1 /CLONE=UI-R-BT1-aqk-a-09-0-UI /FEA=EST /CNT=1 /TID=Rn.50245.1 /TIER=ConsEnd /STK=1 /UG=Rn.50245 /UG_TITLE=EST BE102234 family with sequence similarity 71, member E1 Fam71e1 361564 XM_001077811 /// XM_341847 1393819_x_at BG371690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371690 /DB_XREF=gi:13268227 /DB_XREF=UI-R-CV0-brh-a-08-0-UI.s1 /CLONE=UI-R-CV0-brh-a-08-0-UI /FEA=EST /CNT=1 /TID=Rn.22169.2 /TIER=ConsEnd /STK=1 /UG=Rn.22169 /UG_TITLE=ESTs BG371690 1393820_at AW533433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533433 /DB_XREF=gi:7175847 /DB_XREF=UI-R-BU0-anb-h-03-0-UI.s1 /CLONE=UI-R-BU0-anb-h-03-0-UI /FEA=EST /CNT=1 /TID=Rn.48118.1 /TIER=ConsEnd /STK=1 /UG=Rn.48118 /UG_TITLE=EST AW533433 1393821_at BF416086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416086 /DB_XREF=gi:11404075 /DB_XREF=UI-R-CA0-bkq-b-01-0-UI.s1 /CLONE=UI-R-CA0-bkq-b-01-0-UI /FEA=EST /CNT=1 /TID=Rn.76040.1 /TIER=ConsEnd /STK=1 /UG=Rn.76040 /UG_TITLE=EST BF416086 Na+/K+ transporting ATPase interacting 3 Nkain3 689576 NM_001109540 1393822_at AA925789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925789 /DB_XREF=gi:4236980 /DB_XREF=UI-R-A1-et-f-03-0-UI.s1 /CLONE=UI-R-A1-et-f-03-0-UI /FEA=EST /CNT=1 /TID=Rn.15606.1 /TIER=ConsEnd /STK=1 /UG=Rn.15606 /UG_TITLE=EST AA925789 transmembrane and coiled-coil domain family 3 Tmcc3 314751 NM_001108084 0016021 // integral to membrane // inferred from electronic annotation 1393823_at BE121014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121014 /DB_XREF=gi:8513119 /DB_XREF=UI-R-CA0-bar-b-04-0-UI.s1 /CLONE=UI-R-CA0-bar-b-04-0-UI /FEA=EST /CNT=1 /TID=Rn.53711.1 /TIER=ConsEnd /STK=1 /UG=Rn.53711 /UG_TITLE=EST BE121014 polymerase (DNA directed), eta Polh 316235 NM_001108204 0000731 // DNA synthesis involved in DNA repair // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006290 // pyrimidine dimer repair // not recorded /// 0006301 // postreplication repair // not recorded /// 0010225 // response to UV-C // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // not recorded 1393824_at BG377414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377414 /DB_XREF=gi:13301886 /DB_XREF=UI-R-CU0-buy-c-05-0-UI.s1 /CLONE=UI-R-CU0-buy-c-05-0-UI /FEA=EST /CNT=1 /TID=Rn.66492.1 /TIER=ConsEnd /STK=1 /UG=Rn.66492 /UG_TITLE=EST BG377414 Similar to RIKEN cDNA 9030409E16 RGD1559505 498953 NM_001134608 1393825_at AI454854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454854 /DB_XREF=gi:4296637 /DB_XREF=UI-R-BT0-qk-f-10-0-UI.s1 /CLONE=UI-R-BT0-qk-f-10-0-UI /FEA=EST /CNT=1 /TID=Rn.35127.1 /TIER=ConsEnd /STK=1 /UG=Rn.35127 /UG_TITLE=ESTs, Moderately similar to GB11_RAT GUANINE NUCLEOTIDE-BINDING PROTEIN, ALPHA-11 SUBUNIT (R.norvegicus) AI454854 guanine nucleotide binding protein, alpha 14 Gna14 309242 NM_001013151 0006471 // protein ADP-ribosylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation 1393826_at AI043761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043761 /DB_XREF=gi:3290496 /DB_XREF=UI-R-C0-jm-c-09-0-UI.s1 /CLONE=UI-R-C0-jm-c-09-0-UI /FEA=EST /CNT=1 /TID=Rn.18716.1 /TIER=ConsEnd /STK=1 /UG=Rn.18716 /UG_TITLE=EST AI043761 apolipoprotein N Apon 304603 NM_001009385 1393827_at BM390901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390901 /DB_XREF=gi:18190954 /DB_XREF=UI-R-CN1-cjp-i-11-0-UI.s1 /CLONE=UI-R-CN1-cjp-i-11-0-UI /FEA=EST /CNT=1 /TID=Rn.82556.1 /TIER=ConsEnd /STK=1 /UG=Rn.82556 /UG_TITLE=EST BM390901 1393828_at AI145205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145205 /DB_XREF=gi:3667004 /DB_XREF=UI-R-BT0-pv-e-03-0-UI.s1 /CLONE=UI-R-BT0-pv-e-03-0-UI /FEA=EST /CNT=1 /TID=Rn.27850.1 /TIER=ConsEnd /STK=1 /UG=Rn.27850 /UG_TITLE=EST AI145205 Chitinase domain containing 1 Chid1 293628 NM_001047854 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006032 // chitin catabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004568 // chitinase activity // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation 1393829_at AI639475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639475 /DB_XREF=gi:4700509 /DB_XREF=rx04972s /CLONE=rx04972 /FEA=EST /CNT=1 /TID=Rn.43326.1 /TIER=ConsEnd /STK=1 /UG=Rn.43326 /UG_TITLE=EST, Moderately similar to T17322 hypothetical protein DKFZp564O1863.1 (H.sapiens) AI639475 FGFR1 oncogene partner 2 Fgfr1op2 362463 NM_201421 0009611 // response to wounding // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation 1393830_at AA956603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956603 /DB_XREF=gi:4239077 /DB_XREF=UI-R-E1-fn-a-05-0-UI.s1 /CLONE=UI-R-E1-fn-a-05-0-UI /FEA=EST /CNT=1 /TID=Rn.9034.1 /TIER=ConsEnd /STK=1 /UG=Rn.9034 /UG_TITLE=EST AA956603 SH2 domain protein 2A Sh2d2a 310688 NM_207605 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // traceable author statement /// 0008283 // cell proliferation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // traceable author statement /// 0050863 // regulation of T cell activation // non-traceable author statement 0005070 // SH3/SH2 adaptor activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1393831_at BM383212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383212 /DB_XREF=gi:18183265 /DB_XREF=UI-R-DS0-cjd-j-15-0-UI.s1 /CLONE=UI-R-DS0-cjd-j-15-0-UI /FEA=EST /CNT=1 /TID=Rn.81301.1 /TIER=ConsEnd /STK=1 /UG=Rn.81301 /UG_TITLE=EST BM383212 Aminoglycoside phosphotransferase domain containing 1 Agphd1 300723 NM_001106823 1393832_at AI136337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136337 /DB_XREF=gi:3637114 /DB_XREF=UI-R-C2p-oa-h-05-0-UI.s1 /CLONE=UI-R-C2p-oa-h-05-0-UI /FEA=EST /CNT=1 /TID=Rn.27096.1 /TIER=ConsEnd /STK=1 /UG=Rn.27096 /UG_TITLE=EST AI136337 RNA binding motif protein 43 Rbm43 311020 NM_001037649 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1393833_at AI578461 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578461 /DB_XREF=gi:4562837 /DB_XREF=UI-R-AA0-wj-b-10-0-UI.s1 /CLONE=UI-R-AA0-wj-b-10-0-UI /FEA=EST /CNT=1 /TID=Rn.39150.1 /TIER=ConsEnd /STK=1 /UG=Rn.39150 /UG_TITLE=EST AI578461 angel homolog 1 (Drosophila) Angel1 362765 NM_001108717 1393834_at BF402667 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402667 /DB_XREF=gi:11390642 /DB_XREF=UI-R-CA0-bho-b-09-0-UI.s1 /CLONE=UI-R-CA0-bho-b-09-0-UI /FEA=EST /CNT=1 /TID=Rn.60098.1 /TIER=ConsEnd /STK=1 /UG=Rn.60098 /UG_TITLE=EST BF402667 1393835_s_at AA900738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900738 /DB_XREF=gi:4233233 /DB_XREF=UI-R-E0-di-b-06-0-UI.s1 /CLONE=UI-R-E0-di-b-06-0-UI /FEA=EST /CNT=1 /TID=Rn.32475.1 /TIER=ConsEnd /STK=1 /UG=Rn.32475 /UG_TITLE=EST AA900738 1393836_at BE097933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097933 /DB_XREF=gi:8488864 /DB_XREF=UI-R-BX0-ara-g-11-0-UI.s1 /CLONE=UI-R-BX0-ara-g-11-0-UI /FEA=EST /CNT=1 /TID=Rn.74693.1 /TIER=ConsEnd /STK=1 /UG=Rn.74693 /UG_TITLE=EST BE097933 microphthalmia-associated transcription factor Mitf 25094 NM_001191089 /// XM_001065759 /// XM_001074940 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0010468 // regulation of gene expression // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0030154 // cell differentiation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030316 // osteoclast differentiation // not recorded /// 0030316 // osteoclast differentiation // inferred from electronic annotation /// 0030318 // melanocyte differentiation // inferred from electronic annotation /// 0030318 // melanocyte differentiation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043010 // camera-type eye development // inferred from electronic annotation /// 0043010 // camera-type eye development // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043473 // pigmentation // inferred from electronic annotation /// 0043473 // pigmentation // not recorded /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045165 // cell fate commitment // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045670 // regulation of osteoclast differentiation // inferred from electronic annotation /// 0045670 // regulation of osteoclast differentiation // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046849 // bone remodeling // inferred from electronic annotation /// 0046849 // bone remodeling // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1393837_at AI145227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145227 /DB_XREF=gi:3667026 /DB_XREF=UI-R-BT0-qf-a-03-0-UI.s1 /CLONE=UI-R-BT0-qf-a-03-0-UI /FEA=EST /CNT=1 /TID=Rn.27858.1 /TIER=ConsEnd /STK=1 /UG=Rn.27858 /UG_TITLE=EST AI145227 1393838_at AA998494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998494 /DB_XREF=gi:4290245 /DB_XREF=UI-R-C0-ie-e-08-0-UI.s1 /CLONE=UI-R-C0-ie-e-08-0-UI /FEA=EST /CNT=1 /TID=Rn.13087.1 /TIER=ConsEnd /STK=1 /UG=Rn.13087 /UG_TITLE=ESTs AA998494 1393839_x_at AA998494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998494 /DB_XREF=gi:4290245 /DB_XREF=UI-R-C0-ie-e-08-0-UI.s1 /CLONE=UI-R-C0-ie-e-08-0-UI /FEA=EST /CNT=1 /TID=Rn.13087.1 /TIER=ConsEnd /STK=1 /UG=Rn.13087 /UG_TITLE=ESTs AA998494 1393840_at BE095728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095728 /DB_XREF=gi:8486659 /DB_XREF=UI-R-BU0-aoy-f-09-0-UI.s1 /CLONE=UI-R-BU0-aoy-f-09-0-UI /FEA=EST /CNT=1 /TID=Rn.49353.1 /TIER=ConsEnd /STK=1 /UG=Rn.49353 /UG_TITLE=EST BE095728 1393841_at AA859317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859317 /DB_XREF=gi:4229666 /DB_XREF=UI-R-E0-cj-c-11-0-UI.s1 /CLONE=UI-R-E0-cj-c-11-0-UI /FEA=EST /CNT=1 /TID=Rn.16996.2 /TIER=ConsEnd /STK=1 /UG=Rn.16996 /UG_TITLE=ESTs AA859317 similar to hypothetical protein FLJ31810 RGD1310773 313156 NM_001107926 0005515 // protein binding // inferred from electronic annotation 1393842_at BF391556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391556 /DB_XREF=gi:11376409 /DB_XREF=UI-R-CA1-bcs-g-09-0-UI.s1 /CLONE=UI-R-CA1-bcs-g-09-0-UI /FEA=EST /CNT=1 /TID=Rn.75489.1 /TIER=ConsEnd /STK=1 /UG=Rn.75489 /UG_TITLE=EST BF391556 coiled-coil domain containing 77 Ccdc77 312677 NM_001191752 /// XM_001058323 /// XM_232333 1393843_at AI071911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071911 /DB_XREF=gi:3398126 /DB_XREF=UI-R-C2-mz-g-04-0-UI.s1 /CLONE=UI-R-C2-mz-g-04-0-UI /FEA=EST /CNT=1 /TID=Rn.22019.1 /TIER=ConsEnd /STK=1 /UG=Rn.22019 /UG_TITLE=ESTs AI071911 fem-1 homolog b (C. elegans) Fem1b 315745 NM_001108157 0002070 // epithelial cell maturation // not recorded /// 0002070 // epithelial cell maturation // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0051438 // regulation of ubiquitin-protein ligase activity // inferred from electronic annotation /// 0051438 // regulation of ubiquitin-protein ligase activity // not recorded /// 0060442 // branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0060442 // branching involved in prostate gland morphogenesis // not recorded /// 0060743 // epithelial cell maturation involved in prostate gland development // inferred from electronic annotation /// 0060743 // epithelial cell maturation involved in prostate gland development // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005123 // death receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393844_at AW525736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525736 /DB_XREF=gi:7168121 /DB_XREF=UI-R-BJ0p-air-c-04-0-UI.s1 /CLONE=UI-R-BJ0p-air-c-04-0-UI /FEA=EST /CNT=1 /TID=Rn.46005.1 /TIER=ConsEnd /STK=1 /UG=Rn.46005 /UG_TITLE=ESTs AW525736 myeloid leukemia factor 1 interacting protein Mlf1ip 306464 NM_001025673 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393845_a_at AI556940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556940 /DB_XREF=gi:4489303 /DB_XREF=UI-R-C2p-rp-g-04-0-UI.s1 /CLONE=UI-R-C2p-rp-g-04-0-UI /FEA=EST /CNT=1 /TID=Rn.38626.1 /TIER=ConsEnd /STK=1 /UG=Rn.38626 /UG_TITLE=ESTs, Weakly similar to YT41_CAEEL HYPOTHETICAL 136.1 KDA PROTEIN B0416.1 IN CHROMOSOME X (C.elegans) AI556940 transmembrane channel-like 4 Tmc4 308310 NM_001034104 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1393846_at AW530286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530286 /DB_XREF=gi:7172700 /DB_XREF=UI-R-BU0-amu-h-03-0-UI.s1 /CLONE=UI-R-BU0-amu-h-03-0-UI /FEA=EST /CNT=1 /TID=Rn.74575.1 /TIER=ConsEnd /STK=1 /UG=Rn.74575 /UG_TITLE=EST AW530286 family with sequence similarity 107, member A /// downregulated in renal cell carcinoma-like Fam107a /// LOC100364831 100364831 /// 361018 NM_001025129 /// XM_002725042 /// XM_002725043 0001558 // regulation of cell growth // inferred from electronic annotation /// 0001558 // regulation of cell growth // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393847_at AI502379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502379 /DB_XREF=gi:4400230 /DB_XREF=UI-R-C0-jh-d-12-0-UI.s1 /CLONE=UI-R-C0-jh-d-12-0-UI /FEA=EST /CNT=1 /TID=Rn.35413.1 /TIER=ConsEnd /STK=1 /UG=Rn.35413 /UG_TITLE=EST AI502379 NFKB inhibitor interacting Ras-like 1 Nkiras1 305751 NM_001107252 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1393848_at AA957260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957260 /DB_XREF=gi:4277150 /DB_XREF=UI-R-E1-fp-h-04-0-UI.s1 /CLONE=UI-R-E1-fp-h-04-0-UI /FEA=EST /CNT=1 /TID=Rn.9229.1 /TIER=ConsEnd /STK=1 /UG=Rn.9229 /UG_TITLE=EST, Highly similar to RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 CHAIN (M.musculus) AA957260 ribonucleotide reductase M2 Rrm2 362720 NM_001025740 0006260 // DNA replication // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0009186 // deoxyribonucleoside diphosphate metabolic process // inferred from electronic annotation /// 0009262 // deoxyribonucleotide metabolic process // not recorded /// 0009263 // deoxyribonucleotide biosynthetic process // not recorded /// 0009263 // deoxyribonucleotide biosynthetic process // inferred from sequence or structural similarity /// 0051259 // protein oligomerization // not recorded /// 0051290 // protein heterotetramerization // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004748 // ribonucleoside-diphosphate reductase activity // not recorded /// 0004748 // ribonucleoside-diphosphate reductase activity // inferred from sequence or structural similarity /// 0004748 // ribonucleoside-diphosphate reductase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046914 // transition metal ion binding // inferred from electronic annotation 1393849_at AW521149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521149 /DB_XREF=gi:7163527 /DB_XREF=UI-R-BO0-agp-h-01-0-UI.s1 /CLONE=UI-R-BO0-agp-h-01-0-UI /FEA=EST /CNT=1 /TID=Rn.45117.1 /TIER=ConsEnd /STK=1 /UG=Rn.45117 /UG_TITLE=EST AW521149 1393850_at AW531099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531099 /DB_XREF=gi:7173513 /DB_XREF=UI-R-C4-alg-f-09-0-UI.s1 /CLONE=UI-R-C4-alg-f-09-0-UI /FEA=EST /CNT=1 /TID=Rn.47635.1 /TIER=ConsEnd /STK=1 /UG=Rn.47635 /UG_TITLE=EST, Weakly similar to CRIO MOUSE TERATOCARCINOMA-DERIVED GROWTH FACTOR PRECURSOR (M.musculus) AW531099 cripto, FRL-1, cryptic family 1 Cfc1 501121 NM_001109304 0001889 // liver development // not recorded /// 0001947 // heart looping // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0007368 // determination of left/right symmetry // not recorded /// 0007492 // endoderm development // not recorded /// 0009791 // post-embryonic development // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0048536 // spleen development // not recorded /// 0048546 // digestive tract morphogenesis // not recorded /// 0048856 // anatomical structure development // not recorded /// 0060413 // atrial septum morphogenesis // not recorded /// 0060460 // left lung morphogenesis // not recorded /// 0060541 // respiratory system development // not recorded 1393851_at BE109066 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109066 /DB_XREF=gi:8501171 /DB_XREF=UI-R-BS1-azc-f-01-0-UI.s1 /CLONE=UI-R-BS1-azc-f-01-0-UI /FEA=EST /CNT=1 /TID=Rn.32851.2 /TIER=ConsEnd /STK=1 /UG=Rn.32851 /UG_TITLE=ESTs BE109066 family with sequence similarity 193, member A Fam193a 305452 XM_002724985 /// XM_223536 1393852_at BE115334 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115334 /DB_XREF=gi:8507439 /DB_XREF=UI-R-BJ1-avr-a-12-0-UI.s1 /CLONE=UI-R-BJ1-avr-a-12-0-UI /FEA=EST /CNT=1 /TID=Rn.69344.1 /TIER=ConsEnd /STK=1 /UG=Rn.69344 /UG_TITLE=EST BE115334 vacuolar protein sorting 37 homolog B (S. cerevisiae) Vps37b 288659 NM_001105928 1393853_at AI071003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071003 /DB_XREF=gi:3397254 /DB_XREF=UI-R-C2-na-h-01-0-UI.s1 /CLONE=UI-R-C2-na-h-01-0-UI /FEA=EST /CNT=1 /TID=Rn.33474.2 /TIER=ConsEnd /STK=1 /UG=Rn.33474 /UG_TITLE=ESTs AI071003 1393854_at AA965126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965126 /DB_XREF=gi:4280000 /DB_XREF=UI-R-C0-hc-f-03-0-UI.s1 /CLONE=UI-R-C0-hc-f-03-0-UI /FEA=EST /CNT=1 /TID=Rn.76585.1 /TIER=ConsEnd /STK=1 /UG=Rn.76585 /UG_TITLE=EST AA965126 1393855_at AI072211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072211 /DB_XREF=gi:3398405 /DB_XREF=UI-R-C2-nl-h-10-0-UI.s1 /CLONE=UI-R-C2-nl-h-10-0-UI /FEA=EST /CNT=1 /TID=Rn.20092.1 /TIER=ConsEnd /STK=1 /UG=Rn.20092 /UG_TITLE=EST AI072211 1393856_x_at AA799992 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799992 /DB_XREF=gi:2862947 /DB_XREF=EST189489 /CLONE=RHEAI02 /FEA=EST /CNT=1 /TID=Rn.40386.3 /TIER=ConsEnd /STK=1 /UG=Rn.40386 /UG_TITLE=ESTs AA799992 similar to C11orf17 protein RGD1306959 361624 NM_001108497 0005515 // protein binding // not recorded 1393857_at AW253255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253255 /DB_XREF=gi:6596846 /DB_XREF=UI-R-BJ0-aek-e-04-0-UI.s1 /CLONE=UI-R-BJ0-aek-e-04-0-UI /FEA=EST /CNT=1 /TID=Rn.44749.1 /TIER=ConsEnd /STK=1 /UG=Rn.44749 /UG_TITLE=EST AW253255 1393858_at BI294306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294306 /DB_XREF=gi:14956642 /DB_XREF=UI-R-DK0-ceh-b-01-0-UI.s1 /CLONE=UI-R-DK0-ceh-b-01-0-UI /FEA=EST /CNT=1 /TID=Rn.79564.1 /TIER=ConsEnd /STK=1 /UG=Rn.79564 /UG_TITLE=EST BI294306 hypothetical protein LOC689656 LOC689656 689656 XM_001071529 /// XM_002726638 1393859_at AW531315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531315 /DB_XREF=gi:7173744 /DB_XREF=UI-R-C4-akw-f-02-0-UI.s1 /CLONE=UI-R-C4-akw-f-02-0-UI /FEA=EST /CNT=1 /TID=Rn.47686.1 /TIER=ConsEnd /STK=1 /UG=Rn.47686 /UG_TITLE=EST AW531315 1393860_at AI059216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059216 /DB_XREF=gi:3332993 /DB_XREF=UI-R-C1-lb-f-11-0-UI.s1 /CLONE=UI-R-C1-lb-f-11-0-UI /FEA=EST /CNT=1 /TID=Rn.24515.2 /TIER=ConsEnd /STK=1 /UG=Rn.24515 /UG_TITLE=ESTs AI059216 1393861_at AI044497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044497 /DB_XREF=gi:3291358 /DB_XREF=UI-R-C1-jw-g-08-0-UI.s1 /CLONE=UI-R-C1-jw-g-08-0-UI /FEA=EST /CNT=1 /TID=Rn.20759.2 /TIER=ConsEnd /STK=1 /UG=Rn.20759 /UG_TITLE=ESTs AI044497 translocase of outer mitochondrial membrane 40 homolog B (yeast) Tomm40b 304971 NM_001083338 0006810 // transport // inferred from electronic annotation /// 0006820 // anion transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0008308 // voltage-gated anion channel activity // inferred from electronic annotation 1393862_at AW530492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530492 /DB_XREF=gi:7172906 /DB_XREF=UI-R-C4-akx-g-02-0-UI.s1 /CLONE=UI-R-C4-akx-g-02-0-UI /FEA=EST /CNT=1 /TID=Rn.68012.1 /TIER=ConsEnd /STK=1 /UG=Rn.68012 /UG_TITLE=EST, Weakly similar to T44342 hypothetical protein TSC501 (H.sapiens) AW530492 probable N-acetyltransferase CML4-like LOC100363700 100363700 XM_002726427 1393863_at AA999005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA999005 /DB_XREF=gi:4293368 /DB_XREF=UI-R-C0-ih-d-08-0-UI.s1 /CLONE=UI-R-C0-ih-d-08-0-UI /FEA=EST /CNT=1 /TID=Rn.13241.1 /TIER=ConsEnd /STK=1 /UG=Rn.13241 /UG_TITLE=EST AA999005 CD180 molecule Cd180 294706 NM_001106405 0005515 // protein binding // not recorded 1393864_at BF390797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390797 /DB_XREF=gi:11375644 /DB_XREF=UI-R-CA1-bcp-e-10-0-UI.s1 /CLONE=UI-R-CA1-bcp-e-10-0-UI /FEA=EST /CNT=1 /TID=Rn.57277.1 /TIER=ConsEnd /STK=1 /UG=Rn.57277 /UG_TITLE=EST BF390797 1393865_at AI556106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556106 /DB_XREF=gi:4488469 /DB_XREF=UI-R-C2p-rf-d-02-0-UI.s1 /CLONE=UI-R-C2p-rf-d-02-0-UI /FEA=EST /CNT=1 /TID=Rn.74009.1 /TIER=ConsEnd /STK=1 /UG=Rn.74009 /UG_TITLE=EST, Weakly similar to ROH1 RAT RETINOL DEHYDROGENASE TYPE I (R.norvegicus) AI556106 retinol dehydrogenase 5 Rdh5 366791 XM_002726857 /// XM_345770 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1393866_at AI137157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137157 /DB_XREF=gi:3637934 /DB_XREF=UI-R-C2p-oh-b-10-0-UI.s1 /CLONE=UI-R-C2p-oh-b-10-0-UI /FEA=EST /CNT=1 /TID=Rn.27332.1 /TIER=ConsEnd /STK=1 /UG=Rn.27332 /UG_TITLE=EST AI137157 tumor necrosis factor receptor superfamily, member 25 Tnfrsf25 500592 NM_001137644 0007165 // signal transduction // inferred from electronic annotation 0005886 // plasma membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1393867_at AA875407 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875407 /DB_XREF=gi:4231288 /DB_XREF=UI-R-E0-cs-a-11-0-UI.s1 /CLONE=UI-R-E0-cs-a-11-0-UI /FEA=EST /CNT=1 /TID=Rn.64037.2 /TIER=ConsEnd /STK=1 /UG=Rn.64037 /UG_TITLE=ESTs AA875407 1393868_at AW535602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535602 /DB_XREF=gi:7178016 /DB_XREF=UI-R-C4-aly-g-06-0-UI.s1 /CLONE=UI-R-C4-aly-g-06-0-UI /FEA=EST /CNT=1 /TID=Rn.48525.1 /TIER=ConsEnd /STK=1 /UG=Rn.48525 /UG_TITLE=EST AW535602 protocadherin 10 Pcdh10 361943 XM_001054521 /// XM_342242 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1393869_at AA859589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859589 /DB_XREF=gi:4230135 /DB_XREF=UI-R-E0-bv-d-10-0-UI.s1 /CLONE=UI-R-E0-bv-d-10-0-UI /FEA=EST /CNT=1 /TID=Rn.6.1 /TIER=ConsEnd /STK=1 /UG=Rn.6 /UG_TITLE=EST AA859589 1393870_at AA799465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799465 /DB_XREF=gi:2862420 /DB_XREF=EST188962 /CLONE=RHEAB36 /FEA=EST /CNT=1 /TID=Rn.6188.1 /TIER=ConsEnd /STK=1 /UG=Rn.6188 /UG_TITLE=EST AA799465 1393871_at AI072022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072022 /DB_XREF=gi:3398216 /DB_XREF=UI-R-C2-nd-e-06-0-UI.s1 /CLONE=UI-R-C2-nd-e-06-0-UI /FEA=EST /CNT=1 /TID=Rn.22030.1 /TIER=ConsEnd /STK=1 /UG=Rn.22030 /UG_TITLE=EST AI072022 1393872_at BF401995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401995 /DB_XREF=gi:11389970 /DB_XREF=UI-R-CA0-bhv-d-01-0-UI.s1 /CLONE=UI-R-CA0-bhv-d-01-0-UI /FEA=EST /CNT=1 /TID=Rn.71073.1 /TIER=ConsEnd /STK=1 /UG=Rn.71073 /UG_TITLE=EST BF401995 Sel-1 suppressor of lin-12-like 3 (C. elegans) Sel1l3 360945 XM_001055920 /// XM_341223 0005488 // binding // inferred from electronic annotation 1393873_s_at AI639528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639528 /DB_XREF=gi:4700562 /DB_XREF=rx04970s /CLONE=rx04970 /FEA=EST /CNT=1 /TID=Rn.43709.1 /TIER=ConsEnd /STK=1 /UG=Rn.43709 /UG_TITLE=EST, Weakly similar to 2019253A oxysterol-binding protein-like protein (Saccharomyces cerevisiae) (S.cerevisiae) AI639528 1393874_at AI071423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071423 /DB_XREF=gi:3397638 /DB_XREF=UI-R-C2-nb-g-08-0-UI.s1 /CLONE=UI-R-C2-nb-g-08-0-UI /FEA=EST /CNT=1 /TID=Rn.20532.1 /TIER=ConsEnd /STK=1 /UG=Rn.20532 /UG_TITLE=EST AI071423 aquaporin 12B Aqp12b 367316 NM_001109009 0006810 // transport // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1393875_at AI500781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI500781 /DB_XREF=gi:4398632 /DB_XREF=UI-R-C2p-rq-a-12-0-UI.s1 /CLONE=UI-R-C2p-rq-a-12-0-UI /FEA=EST /CNT=1 /TID=Rn.34490.1 /TIER=ConsEnd /STK=1 /UG=Rn.34490 /UG_TITLE=EST AI500781 Solute carrier family 35, member D2 Slc35d2 290959 NM_001106098 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1393876_at AA956024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956024 /DB_XREF=gi:4238419 /DB_XREF=UI-R-E1-fe-a-12-0-UI.s1 /CLONE=UI-R-E1-fe-a-12-0-UI /FEA=EST /CNT=1 /TID=Rn.9534.1 /TIER=ConsEnd /STK=1 /UG=Rn.9534 /UG_TITLE=EST AA956024 homeo box C5 Hoxc5 315341 NM_001108116 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1393877_at BM386887 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386887 /DB_XREF=gi:18186940 /DB_XREF=UI-R-CN1-cjh-f-20-0-UI.s1 /CLONE=UI-R-CN1-cjh-f-20-0-UI /FEA=EST /CNT=1 /TID=Rn.81875.1 /TIER=ConsEnd /STK=1 /UG=Rn.81875 /UG_TITLE=EST BM386887 1393878_at BF416495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416495 /DB_XREF=gi:11404484 /DB_XREF=UI-R-CA0-bkk-c-08-0-UI.s1 /CLONE=UI-R-CA0-bkk-c-08-0-UI /FEA=EST /CNT=1 /TID=Rn.63041.1 /TIER=ConsEnd /STK=1 /UG=Rn.63041 /UG_TITLE=EST BF416495 1393879_at BF391763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391763 /DB_XREF=gi:11376617 /DB_XREF=UI-R-CA1-bcu-b-11-0-UI.s1 /CLONE=UI-R-CA1-bcu-b-11-0-UI /FEA=EST /CNT=1 /TID=Rn.70382.1 /TIER=ConsEnd /STK=1 /UG=Rn.70382 /UG_TITLE=EST BF391763 1393880_at AI030169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030169 /DB_XREF=gi:3247995 /DB_XREF=UI-R-C0-it-b-09-0-UI.s1 /CLONE=UI-R-C0-it-b-09-0-UI /FEA=EST /CNT=1 /TID=Rn.18424.1 /TIER=ConsEnd /STK=1 /UG=Rn.18424 /UG_TITLE=EST AI030169 1393881_at AW527638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527638 /DB_XREF=gi:7170052 /DB_XREF=UI-R-BT1-ajz-e-07-0-UI.s1 /CLONE=UI-R-BT1-ajz-e-07-0-UI /FEA=EST /CNT=1 /TID=Rn.46602.1 /TIER=ConsEnd /STK=1 /UG=Rn.46602 /UG_TITLE=EST, Weakly similar to XYBYT1 protein N-acetyltransferase (EC 2.3.1.-) chain NAT1 - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AW527638 NMDA receptor regulated 1 Narg1 310399 NM_001107674 0006474 // N-terminal protein amino acid acetylation // not recorded /// 0008152 // metabolic process // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008080 // N-acetyltransferase activity // not recorded /// 0016407 // acetyltransferase activity // not recorded /// 0043022 // ribosome binding // not recorded 1393882_at AI144849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144849 /DB_XREF=gi:3666648 /DB_XREF=UI-R-BT0-pm-f-01-0-UI.s1 /CLONE=UI-R-BT0-pm-f-01-0-UI /FEA=EST /CNT=1 /TID=Rn.27705.1 /TIER=ConsEnd /STK=1 /UG=Rn.27705 /UG_TITLE=EST AI144849 similar to Protein C20orf85 homolog LOC689618 689618 NM_001109542 1393883_at AI556852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556852 /DB_XREF=gi:4489215 /DB_XREF=UI-R-C2p-ro-g-06-0-UI.s1 /CLONE=UI-R-C2p-ro-g-06-0-UI /FEA=EST /CNT=1 /TID=Rn.74033.1 /TIER=ConsEnd /STK=1 /UG=Rn.74033 /UG_TITLE=EST AI556852 1393884_at BE114434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114434 /DB_XREF=gi:8506539 /DB_XREF=UI-R-CA0-axm-b-11-0-UI.s1 /CLONE=UI-R-CA0-axm-b-11-0-UI /FEA=EST /CNT=1 /TID=Rn.52382.1 /TIER=ConsEnd /STK=1 /UG=Rn.52382 /UG_TITLE=EST BE114434 1393885_at AI555620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555620 /DB_XREF=gi:4487983 /DB_XREF=UI-R-C2p-qy-c-02-0-UI.s1 /CLONE=UI-R-C2p-qy-c-02-0-UI /FEA=EST /CNT=1 /TID=Rn.38023.1 /TIER=ConsEnd /STK=1 /UG=Rn.38023 /UG_TITLE=EST AI555620 1393886_at BI301345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301345 /DB_XREF=gi:14977625 /DB_XREF=UI-R-DL0-cio-n-03-0-UI.s1 /CLONE=UI-R-DL0-cio-n-03-0-UI /FEA=EST /CNT=1 /TID=Rn.76857.1 /TIER=ConsEnd /STK=1 /UG=Rn.76857 /UG_TITLE=EST, Weakly similar to RL9 RAT 60S RIBOSOMAL PROTEIN L9 (R.norvegicus) BI301345 1393887_at AI511041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511041 /DB_XREF=gi:4416740 /DB_XREF=UI-R-C2p-oc-e-09-0-UI.s1 /CLONE=UI-R-C2p-oc-e-09-0-UI /FEA=EST /CNT=1 /TID=Rn.6484.2 /TIER=ConsEnd /STK=1 /UG=Rn.6484 /UG_TITLE=ESTs, Weakly similar to T27032 hypothetical protein Y49A3A.1 - Caenorhabditis elegans (C.elegans) AI511041 choline phosphotransferase 1 Chpt1 362866 NM_001007750 0006656 // phosphatidylcholine biosynthetic process // inferred from electronic annotation /// 0006656 // phosphatidylcholine biosynthetic process // not recorded /// 0006663 // platelet activating factor biosynthetic process // inferred from electronic annotation /// 0006663 // platelet activating factor biosynthetic process // not recorded /// 0008654 // phospholipid biosynthetic process // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004142 // diacylglycerol cholinephosphotransferase activity // inferred from electronic annotation /// 0004142 // diacylglycerol cholinephosphotransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016780 // phosphotransferase activity, for other substituted phosphate groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393888_at AI059285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059285 /DB_XREF=gi:3333062 /DB_XREF=UI-R-C1-lb-f-01-0-UI.s1 /CLONE=UI-R-C1-lb-f-01-0-UI /FEA=EST /CNT=1 /TID=Rn.19121.1 /TIER=ConsEnd /STK=1 /UG=Rn.19121 /UG_TITLE=EST, Highly similar to MUELLERIAN INHIBITING FACTOR PRECURSOR (R.norvegicus) AI059285 anti-Mullerian hormone Amh 25378 NM_012902 0001541 // ovarian follicle development // inferred from direct assay /// 0001546 // preantral ovarian follicle growth // inferred from direct assay /// 0001655 // urogenital system development // inferred from direct assay /// 0001880 // Mullerian duct regression // traceable author statement /// 0007506 // gonadal mesoderm development // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0008406 // gonad development // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005102 // receptor binding // not recorded /// 0005102 // receptor binding // inferred from electronic annotation /// 0005160 // transforming growth factor beta receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from electronic annotation 1393889_x_at AI058527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058527 /DB_XREF=gi:3332304 /DB_XREF=UI-R-C1-ku-a-07-0-UI.s1 /CLONE=UI-R-C1-ku-a-07-0-UI /FEA=EST /CNT=1 /TID=Rn.19450.2 /TIER=ConsEnd /STK=1 /UG=Rn.19450 /UG_TITLE=ESTs AI058527 1393890_at BG670819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670819 /DB_XREF=gi:13892918 /DB_XREF=DRNBGB03 /CLONE=DRNBGB03 /FEA=EST /CNT=8 /TID=Rn.74187.1 /TIER=ConsEnd /STK=0 /UG=Rn.74187 /UG_TITLE=ESTs BG670819 protein phosphatase 1, regulatory (inhibitor) subunit 1C Ppp1r1c 499818 NM_001109200 0007165 // signal transduction // inferred from electronic annotation 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from electronic annotation 1393891_at BE128699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE128699 /DB_XREF=gi:8551452 /DB_XREF=DEPA2449 /FEA=EST /CNT=5 /TID=Rn.53843.1 /TIER=ConsEnd /STK=0 /UG=Rn.53843 /UG_TITLE=ESTs, Highly similar to 1917150A collagen:SUBUNIT=alpha1:ISOTYPE=VIII (R.norvegicus) BE128699 collagen, type VIII, alpha 1 Col8a1 304021 NM_001107100 0010811 // positive regulation of cell-substrate adhesion // not recorded /// 0048593 // camera-type eye morphogenesis // not recorded /// 0050673 // epithelial cell proliferation // not recorded 0031012 // extracellular matrix // not recorded 1393892_at BF399123 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399123 /DB_XREF=gi:11384127 /DB_XREF=UI-R-CA1-bja-l-06-0-UI.s1 /CLONE=UI-R-CA1-bja-l-06-0-UI /FEA=EST /CNT=4 /TID=Rn.59235.1 /TIER=ConsEnd /STK=0 /UG=Rn.59235 /UG_TITLE=ESTs BF399123 LOC360508 RGD1306625 360508 NM_001108271 1393893_at BF404146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404146 /DB_XREF=gi:11392121 /DB_XREF=UI-R-CA1-biw-l-14-0-UI.s1 /CLONE=UI-R-CA1-biw-l-14-0-UI /FEA=EST /CNT=3 /TID=Rn.57435.2 /TIER=ConsEnd /STK=0 /UG=Rn.57435 /UG_TITLE=ESTs BF404146 MORN repeat containing 5 Morn5 362122 NM_001047912 1393894_at AW142784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142784 /DB_XREF=gi:6162683 /DB_XREF=EST293037 /CLONE=RGIAV56 /FEA=EST /CNT=3 /TID=Rn.22720.1 /TIER=ConsEnd /STK=0 /UG=Rn.22720 /UG_TITLE=ESTs AW142784 cytochrome P450, family 4, subfamily a, polypeptide 8 Cyp4a8 266674 NM_031605 0001822 // kidney development // inferred from expression pattern /// 0006631 // fatty acid metabolic process // inferred from direct assay /// 0019369 // arachidonic acid metabolic process // inferred from direct assay /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0048252 // lauric acid metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // traceable author statement /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from direct assay /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1393895_a_at AI070629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070629 /DB_XREF=gi:3396880 /DB_XREF=UI-R-C2-mv-e-08-0-UI.s1 /CLONE=UI-R-C2-mv-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.19808.1 /TIER=ConsEnd /STK=0 /UG=Rn.19808 /UG_TITLE=ESTs AI070629 RGD1564177 RGD1564177 501592 XM_001054841 /// XM_580215 1393896_at AI716974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716974 /DB_XREF=gi:5034230 /DB_XREF=UI-R-Y0-acl-d-11-0-UI.s1 /CLONE=UI-R-Y0-acl-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.40666.1 /TIER=ConsEnd /STK=0 /UG=Rn.40666 /UG_TITLE=ESTs AI716974 laminin gamma 3 Lamc3 311862 NM_001107830 0007155 // cell adhesion // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation 1393897_at BF419648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419648 /DB_XREF=gi:11407632 /DB_XREF=UI-R-CA0-bpe-e-10-0-UI.s1 /CLONE=UI-R-CA0-bpe-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.62576.1 /TIER=ConsEnd /STK=0 /UG=Rn.62576 /UG_TITLE=ESTs, Weakly similar to CADHERIN-6 PRECURSOR (R.norvegicus) BF419648 cadherin 20 Cdh20 363948 NM_001012748 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1393898_at AA998222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998222 /DB_XREF=gi:4288370 /DB_XREF=UI-R-C0-ib-d-06-0-UI.s1 /CLONE=UI-R-C0-ib-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.13281.1 /TIER=ConsEnd /STK=0 /UG=Rn.13281 /UG_TITLE=ESTs AA998222 1393899_at AA901361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901361 /DB_XREF=gi:4233862 /DB_XREF=UI-R-A1-dw-c-12-0-UI.s1 /CLONE=UI-R-A1-dw-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.19493.2 /TIER=ConsEnd /STK=0 /UG=Rn.19493 /UG_TITLE=ESTs AA901361 guanosine monophosphate reductase 2 Gmpr2 192357 NM_001013036 0008152 // metabolic process // inferred from electronic annotation /// 0009117 // nucleotide metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003920 // GMP reductase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1393900_at AW527725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527725 /DB_XREF=gi:7170139 /DB_XREF=UI-R-BT1-ajy-e-02-0-UI.s1 /CLONE=UI-R-BT1-ajy-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.46636.1 /TIER=ConsEnd /STK=0 /UG=Rn.46636 /UG_TITLE=ESTs AW527725 1393901_at BF408914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408914 /DB_XREF=gi:11396889 /DB_XREF=UI-R-BS2-bet-h-04-0-UI.s1 /CLONE=UI-R-BS2-bet-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.64331.2 /TIER=ConsEnd /STK=0 /UG=Rn.64331 /UG_TITLE=ESTs, Highly similar to MTG8 MOUSE MTG8 PROTEIN (M.musculus) BF408914 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) Runx1t1 362489 NM_001108657 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0045444 // fat cell differentiation // not recorded /// 0051101 // regulation of DNA binding // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1393902_at AI072107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072107 /DB_XREF=gi:3398301 /DB_XREF=UI-R-C2-nf-f-10-0-UI.s1 /CLONE=UI-R-C2-nf-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.20058.1 /TIER=ConsEnd /STK=0 /UG=Rn.20058 /UG_TITLE=ESTs, Weakly similar to 2008147B protein RAKc (R.norvegicus) AI072107 aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase) Akr1c1 307092 NM_001033697 0007586 // digestion // not recorded /// 0008202 // steroid metabolic process // not recorded /// 0008206 // bile acid metabolic process // not recorded /// 0042493 // response to drug // inferred from direct assay /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0046683 // response to organophosphorus // not recorded /// 0051260 // protein homooligomerization // not recorded /// 0055114 // oxidation reduction // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005829 // cytosol // not recorded 0004303 // estradiol 17-beta-dehydrogenase activity // not recorded /// 0004303 // estradiol 17-beta-dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0031406 // carboxylic acid binding // not recorded /// 0032052 // bile acid binding // not recorded /// 0047006 // 20-alpha-hydroxysteroid dehydrogenase activity // inferred from direct assay /// 0047042 // 3-alpha-hydroxysteroid dehydrogenase (B-specific) activity // not recorded /// 0047045 // testosterone 17-beta-dehydrogenase (NADP+) activity // inferred from direct assay /// 0047115 // trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity // not recorded 1393903_at AW526742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526742 /DB_XREF=gi:7169156 /DB_XREF=UI-R-BT1-ake-e-06-0-UI.s1 /CLONE=UI-R-BT1-ake-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.46308.1 /TIER=ConsEnd /STK=0 /UG=Rn.46308 /UG_TITLE=ESTs AW526742 1393904_at BE098290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098290 /DB_XREF=gi:8490153 /DB_XREF=UI-R-BJ1-asy-a-02-0-UI.s1 /CLONE=UI-R-BJ1-asy-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.49778.1 /TIER=ConsEnd /STK=0 /UG=Rn.49778 /UG_TITLE=ESTs BE098290 lin-28 homolog (C. elegans) Lin28 500562 NM_001109269 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0010587 // miRNA catabolic process // not recorded /// 0019827 // stem cell maintenance // not recorded /// 0031054 // pre-microRNA processing // not recorded /// 0031123 // RNA 3'-end processing // not recorded /// 0045727 // positive regulation of translation // not recorded /// 0048863 // stem cell differentiation // not recorded 0000932 // cytoplasmic mRNA processing body // not recorded /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0010494 // stress granule // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0003729 // mRNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0031369 // translation initiation factor binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1393905_at AI145446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145446 /DB_XREF=gi:3667245 /DB_XREF=UI-R-BT0-pv-d-08-0-UI.s1 /CLONE=UI-R-BT0-pv-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.42652.1 /TIER=ConsEnd /STK=0 /UG=Rn.42652 /UG_TITLE=ESTs, Weakly similar to F52E4.7.p (Caenorhabditis elegans) (C.elegans) AI145446 SEC3-like 1 (S. cerevisiae) Sec3l1 305287 NM_001024770 1393906_at AA962978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA962978 /DB_XREF=gi:4277949 /DB_XREF=UI-R-E1-fx-h-06-0-UI.s1 /CLONE=UI-R-E1-fx-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.12173.1 /TIER=ConsEnd /STK=0 /UG=Rn.12173 /UG_TITLE=ESTs, Moderately similar to T12464 hypothetical protein DKFZp564J102.1 (H.sapiens) AA962978 family with sequence similarity 149, member A Fam149a 361153 XM_001061521 /// XM_341438 1393907_at AA998735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998735 /DB_XREF=gi:4291917 /DB_XREF=UI-R-C0-ii-c-10-0-UI.s1 /CLONE=UI-R-C0-ii-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.13173.1 /TIER=ConsEnd /STK=0 /UG=Rn.13173 /UG_TITLE=ESTs, Highly similar to PEPTIDE YY PRECURSOR (R.norvegicus) AA998735 peptide YY (mapped) Pyy 287730 NM_001034080 0032096 // negative regulation of response to food // inferred from direct assay /// 0042755 // eating behavior // inferred from electronic annotation /// 0042755 // eating behavior // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay 0005179 // hormone activity // inferred from electronic annotation /// 0005184 // neuropeptide hormone activity // not recorded /// 0005184 // neuropeptide hormone activity // traceable author statement /// 0005184 // neuropeptide hormone activity // inferred from electronic annotation 1393908_at AA899594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899594 /DB_XREF=gi:4232092 /DB_XREF=UI-R-E0-cy-e-11-0-UI.s1 /CLONE=UI-R-E0-cy-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.43221.1 /TIER=ConsEnd /STK=0 /UG=Rn.43221 /UG_TITLE=ESTs, Weakly similar to A60716 somatotropin intron-related protein RDE.25 - rat (R.norvegicus) AA899594 1393909_at BF544438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF544438 /DB_XREF=gi:11635545 /DB_XREF=UI-R-BT0-pv-h-05-0-UI.r1 /CLONE=UI-R-BT0-pv-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.27855.1 /TIER=ConsEnd /STK=0 /UG=Rn.27855 /UG_TITLE=ESTs BF544438 similar to KIAA1841 protein RGD1305110 305579 NM_001100971 1393910_at BF563961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563961 /DB_XREF=gi:11673691 /DB_XREF=UI-R-C4-akw-g-12-0-UI.r1 /CLONE=UI-R-C4-akw-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.47690.1 /TIER=ConsEnd /STK=0 /UG=Rn.47690 /UG_TITLE=ESTs BF563961 family with sequence similarity 13, member A1 Fam13a1 362378 NM_001100862 /// XM_001060651 /// XM_342702 1393911_at AI502300 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502300 /DB_XREF=gi:4400151 /DB_XREF=UI-R-C1-li-b-02-0-UI.s1 /CLONE=UI-R-C1-li-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.35396.1 /TIER=ConsEnd /STK=0 /UG=Rn.35396 /UG_TITLE=ESTs AI502300 1393912_at AI548154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548154 /DB_XREF=gi:4465642 /DB_XREF=UI-R-C3-sm-h-10-0-UI.s1 /CLONE=UI-R-C3-sm-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.41688.1 /TIER=ConsEnd /STK=0 /UG=Rn.41688 /UG_TITLE=ESTs AI548154 1393913_at AI145730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145730 /DB_XREF=gi:3667529 /DB_XREF=UI-R-BT0-qd-g-05-0-UI.s1 /CLONE=UI-R-BT0-qd-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.28592.1 /TIER=ConsEnd /STK=0 /UG=Rn.28592 /UG_TITLE=ESTs AI145730 similar to 1700113K14Rik protein RGD1311084 311852 NM_001100979 1393914_at AI709526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709526 /DB_XREF=gi:4999302 /DB_XREF=UI-R-C3-tn-c-11-0-UI.s1 /CLONE=UI-R-C3-tn-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.41258.1 /TIER=ConsEnd /STK=0 /UG=Rn.41258 /UG_TITLE=ESTs, Moderately similar to RRM2_HUMAN PUTATIVE RIBOSOMAL RNA METHYLTRANSFERASE 2 (RRNA (URIDINE-2-O-)-METHYLTRANSFERASE) (JM23 PROTEIN) (H.sapiens) AI709526 Ftsj homolog 1 (E. coli) Ftsj1 363450 XM_001062916 /// XM_343771 0006364 // rRNA processing // inferred from electronic annotation /// 0031167 // rRNA methylation // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008650 // rRNA (uridine-2'-O-)-methyltransferase activity // inferred from electronic annotation 1393915_at BE128627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE128627 /DB_XREF=gi:8551380 /DB_XREF=DEPA2377 /FEA=EST /CNT=2 /TID=Rn.41065.2 /TIER=ConsEnd /STK=0 /UG=Rn.41065 /UG_TITLE=ESTs, Weakly similar to R155.1.p (Caenorhabditis elegans) (C.elegans) BE128627 lysophosphatidylcholine acyltransferase 3 Lpcat3 362434 NM_001012189 0008654 // phospholipid biosynthetic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0047184 // 1-acylglycerophosphocholine O-acyltransferase activity // inferred from electronic annotation 1393916_at AI044713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044713 /DB_XREF=gi:3291574 /DB_XREF=UI-R-C1-kd-h-06-0-UI.s1 /CLONE=UI-R-C1-kd-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.16007.1 /TIER=ConsEnd /STK=0 /UG=Rn.16007 /UG_TITLE=ESTs AI044713 1393917_at BF555488 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555488 /DB_XREF=gi:11665218 /DB_XREF=UI-R-A1-do-d-07-0-UI.r1 /CLONE=UI-R-A1-do-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.8158.3 /TIER=ConsEnd /STK=0 /UG=Rn.8158 /UG_TITLE=ESTs BF555488 CD163 molecule Cd163 312701 NM_001107887 0016020 // membrane // inferred from electronic annotation 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393918_at BF386682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386682 /DB_XREF=gi:11371506 /DB_XREF=UI-R-CA1-bbg-c-05-0-UI.s1 /CLONE=UI-R-CA1-bbg-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.44018.1 /TIER=ConsEnd /STK=0 /UG=Rn.44018 /UG_TITLE=ESTs, Weakly similar to F45E12.5.p (Caenorhabditis elegans) (C.elegans) BF386682 similar to novel protein RGD1566099 360851 NM_001108347 1393919_at AW535116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535116 /DB_XREF=gi:7177530 /DB_XREF=UI-R-C4-als-d-07-0-UI.s1 /CLONE=UI-R-C4-als-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.47831.1 /TIER=ConsEnd /STK=0 /UG=Rn.47831 /UG_TITLE=ESTs AW535116 sphingomyelin synthase 2 Sgms2 310849 NM_001014043 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // inferred from electronic annotation /// 0006686 // sphingomyelin biosynthetic process // inferred from electronic annotation /// 0006686 // sphingomyelin biosynthetic process // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // not recorded 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0033188 // sphingomyelin synthase activity // inferred from electronic annotation /// 0047493 // ceramide cholinephosphotransferase activity // inferred from electronic annotation /// 0047493 // ceramide cholinephosphotransferase activity // not recorded 1393920_at BM391842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391842 /DB_XREF=gi:18191895 /DB_XREF=UI-R-DO1-cmk-f-22-0-UI.s1 /CLONE=UI-R-DO1-cmk-f-22-0-UI /FEA=EST /CNT=1 /TID=Rn.82651.1 /TIER=ConsEnd /STK=0 /UG=Rn.82651 /UG_TITLE=EST BM391842 1393922_at BF567535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567535 /DB_XREF=gi:11677265 /DB_XREF=UI-R-BO0-agp-e-02-0-UI.r1 /CLONE=UI-R-BO0-agp-e-02-0-UI /FEA=EST /CNT=1 /TID=Rn.45113.2 /TIER=ConsEnd /STK=0 /UG=Rn.45113 /UG_TITLE=ESTs BF567535 EF-hand calcium binding domain 7 Efcab7 362549 NM_001191866 /// XM_001056277 /// XM_342870 0005509 // calcium ion binding // inferred from electronic annotation 1393923_at BF388942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388942 /DB_XREF=gi:11373809 /DB_XREF=UI-R-BS2-bdk-d-06-0-UI.s1 /CLONE=UI-R-BS2-bdk-d-06-0-UI /FEA=EST /CNT=1 /TID=Rn.66079.1 /TIER=ConsEnd /STK=0 /UG=Rn.66079 /UG_TITLE=EST BF388942 1393924_s_at BF553036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF553036 /DB_XREF=gi:11662766 /DB_XREF=UI-R-C2-nh-c-02-0-UI.r1 /CLONE=UI-R-C2-nh-c-02-0-UI /FEA=EST /CNT=1 /TID=Rn.73742.2 /TIER=ConsEnd /STK=0 /UG=Rn.73742 /UG_TITLE=ESTs, Highly similar to T50835 hypothetical protein (H.sapiens) BF553036 yippee-like 1 LOC100360867 100360867 XM_002727914 1393925_at BM388014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388014 /DB_XREF=gi:18188067 /DB_XREF=UI-R-CN1-cjl-e-19-0-UI.s1 /CLONE=UI-R-CN1-cjl-e-19-0-UI /FEA=EST /CNT=1 /TID=Rn.82126.1 /TIER=ConsEnd /STK=0 /UG=Rn.82126 /UG_TITLE=EST BM388014 1393926_at AW920039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920039 /DB_XREF=gi:8085845 /DB_XREF=EST351343 /CLONE=RGIGP95 /FEA=EST /CNT=1 /TID=Rn.25436.2 /TIER=ConsEnd /STK=0 /UG=Rn.25436 /UG_TITLE=ESTs AW920039 signal transducing adaptor family member 1 Stap1 305269 NM_001025115 0007165 // signal transduction // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded 0005070 // SH3/SH2 adaptor activity // inferred from electronic annotation /// 0005070 // SH3/SH2 adaptor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393927_at AA997477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997477 /DB_XREF=gi:4283882 /DB_XREF=UI-R-C0-hl-g-09-0-UI.s1 /CLONE=UI-R-C0-hl-g-09-0-UI /FEA=EST /CNT=1 /TID=Rn.12718.1 /TIER=ConsEnd /STK=0 /UG=Rn.12718 /UG_TITLE=ESTs AA997477 Wingless-type MMTV integration site family member 2 Wnt2 114487 XM_001059030 /// XM_575397 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0007223 // Wnt receptor signaling pathway, calcium modulating pathway // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030324 // lung development // inferred from expression pattern /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0055009 // atrial cardiac muscle tissue morphogenesis // not recorded /// 0060045 // positive regulation of cardiac muscle cell proliferation // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060317 // cardiac epithelial to mesenchymal transition // not recorded /// 0060492 // lung induction // inferred from electronic annotation /// 0060492 // lung induction // not recorded /// 0060501 // positive regulation of epithelial cell proliferation involved in lung morphogenesis // inferred from electronic annotation /// 0060501 // positive regulation of epithelial cell proliferation involved in lung morphogenesis // not recorded /// 0060716 // labyrinthine layer blood vessel development // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // not recorded /// 0061180 // mammary gland epithelium development // not recorded /// 0071560 // cellular response to transforming growth factor beta stimulus // not recorded /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0005109 // frizzled binding // inferred from electronic annotation /// 0005109 // frizzled binding // not recorded /// 0005125 // cytokine activity // not recorded 1393928_at AA899202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899202 /DB_XREF=gi:4231698 /DB_XREF=UI-R-E0-bp-f-03-0-UI.s2 /CLONE=UI-R-E0-bp-f-03-0-UI /FEA=EST /CNT=1 /TID=Rn.14907.1 /TIER=ConsEnd /STK=0 /UG=Rn.14907 /UG_TITLE=EST AA899202 1393929_at AI045155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045155 /DB_XREF=gi:3291974 /DB_XREF=UI-R-C1-kk-c-08-0-UI.s1 /CLONE=UI-R-C1-kk-c-08-0-UI /FEA=EST /CNT=1 /TID=Rn.16132.1 /TIER=ConsEnd /STK=0 /UG=Rn.16132 /UG_TITLE=EST, Weakly similar to IL8B RAT HIGH AFFINITY INTERLEUKIN-8 RECEPTOR B (R.norvegicus) AI045155 chemokine (C-C motif) receptor 6 Ccr6 308163 NM_001013145 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016493 // C-C chemokine receptor activity // inferred from electronic annotation 1393930_at AI029426 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029426 /DB_XREF=gi:4298479 /DB_XREF=UI-R-C0-ir-b-01-0-UI.s1 /CLONE=UI-R-C0-ir-b-01-0-UI /FEA=EST /CNT=1 /TID=Rn.18222.2 /TIER=ConsEnd /STK=0 /UG=Rn.18222 /UG_TITLE=ESTs AI029426 1393931_at AI031033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI031033 /DB_XREF=gi:3248859 /DB_XREF=UI-R-C0-jp-c-07-0-UI.s1 /CLONE=UI-R-C0-jp-c-07-0-UI /FEA=EST /CNT=1 /TID=Rn.18663.1 /TIER=ConsEnd /STK=0 /UG=Rn.18663 /UG_TITLE=EST AI031033 LOC363276 RGD1311447 363276 NM_001134587 1393932_at AI060175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060175 /DB_XREF=gi:3333952 /DB_XREF=UI-R-C1-li-c-06-0-UI.s1 /CLONE=UI-R-C1-li-c-06-0-UI /FEA=EST /CNT=1 /TID=Rn.21195.1 /TIER=ConsEnd /STK=0 /UG=Rn.21195 /UG_TITLE=EST, Weakly similar to T16443 hypothetical protein F53B1.2 - Caenorhabditis elegans (C.elegans) AI060175 sterile alpha motif domain containing 8 Samd8 305684 NM_001012040 1393933_at AW144823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144823 /DB_XREF=gi:6161703 /DB_XREF=EST291959 /CLONE=RGICK66 /FEA=EST /CNT=1 /TID=Rn.25122.2 /TIER=ConsEnd /STK=0 /UG=Rn.25122 /UG_TITLE=ESTs, Highly similar to T09123 hybrid receptor SorLA precursor - mouse (M.musculus) AW144823 sortilin-related receptor, LDLR class A repeats-containing Sorl1 300652 NM_053519 /// XM_001065506 /// XM_217115 0008283 // cell proliferation // inferred from expression pattern /// 0016477 // cell migration // inferred from mutant phenotype 0005771 // multivesicular body // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay 0030169 // low-density lipoprotein binding // not recorded 1393934_at AA874877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA874877 /DB_XREF=gi:4230760 /DB_XREF=UI-R-E0-ci-e-09-0-UI.s1 /CLONE=UI-R-E0-ci-e-09-0-UI /FEA=EST /CNT=1 /TID=Rn.3158.1 /TIER=ConsEnd /STK=0 /UG=Rn.3158 /UG_TITLE=EST, Weakly similar to RIE2 (M.musculus) AA874877 1393935_at AA819254 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819254 /DB_XREF=gi:4227913 /DB_XREF=UI-R-A0-al-c-08-0-UI.s2 /CLONE=UI-R-A0-al-c-08-0-UI /FEA=EST /CNT=1 /TID=Rn.33994.1 /TIER=ConsEnd /STK=0 /UG=Rn.33994 /UG_TITLE=EST AA819254 Transmembrane protein 139 Tmem139 680244 XM_001056308 /// XM_002726353 1393936_at AI717642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717642 /DB_XREF=gi:5034946 /DB_XREF=UI-R-Y0-acq-d-06-0-UI.s1 /CLONE=UI-R-Y0-acq-d-06-0-UI /FEA=EST /CNT=1 /TID=Rn.40908.1 /TIER=ConsEnd /STK=0 /UG=Rn.40908 /UG_TITLE=ESTs AI717642 testis-specific serine kinase substrate Tsks 292890 NM_199088 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1393937_at AI577369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577369 /DB_XREF=gi:4561745 /DB_XREF=UI-R-Y0-vn-e-06-0-UI.s1 /CLONE=UI-R-Y0-vn-e-06-0-UI /FEA=EST /CNT=1 /TID=Rn.56493.1 /TIER=ConsEnd /STK=0 /UG=Rn.56493 /UG_TITLE=ESTs AI577369 1393938_at AI501880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501880 /DB_XREF=gi:4399731 /DB_XREF=UI-R-C2p-sd-e-06-0-UI.s1 /CLONE=UI-R-C2p-sd-e-06-0-UI /FEA=EST /CNT=1 /TID=Rn.35575.1 /TIER=ConsEnd /STK=0 /UG=Rn.35575 /UG_TITLE=EST AI501880 1393939_at AI137989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137989 /DB_XREF=gi:3638766 /DB_XREF=UI-R-C2p-oi-a-12-0-UI.s1 /CLONE=UI-R-C2p-oi-a-12-0-UI /FEA=EST /CNT=1 /TID=Rn.27556.1 /TIER=ConsEnd /STK=0 /UG=Rn.27556 /UG_TITLE=EST AI137989 1393940_at AI070444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070444 /DB_XREF=gi:3396695 /DB_XREF=UI-R-C2-mq-d-06-0-UI.s1 /CLONE=UI-R-C2-mq-d-06-0-UI /FEA=EST /CNT=1 /TID=Rn.19758.1 /TIER=ConsEnd /STK=0 /UG=Rn.19758 /UG_TITLE=EST AI070444 1393941_at AI715284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715284 /DB_XREF=gi:5032537 /DB_XREF=UI-R-Y0-abp-e-10-0-UI.s1 /CLONE=UI-R-Y0-abp-e-10-0-UI /FEA=EST /CNT=1 /TID=Rn.42602.1 /TIER=ConsEnd /STK=0 /UG=Rn.42602 /UG_TITLE=EST, Moderately similar to PON1 RAT SERUM PARAOXONASEARYLESTERASE 1 (R.norvegicus) AI715284 paraoxonase 1 Pon1 84024 NM_032077 0006629 // lipid metabolic process // inferred from expression pattern /// 0008203 // cholesterol metabolic process // not recorded /// 0009636 // response to toxin // inferred from electronic annotation /// 0009636 // response to toxin // not recorded /// 0010875 // positive regulation of cholesterol efflux // inferred from electronic annotation /// 0010875 // positive regulation of cholesterol efflux // not recorded /// 0019439 // aromatic compound catabolic process // inferred from electronic annotation /// 0019439 // aromatic compound catabolic process // not recorded /// 0032411 // positive regulation of transporter activity // inferred from electronic annotation /// 0032411 // positive regulation of transporter activity // not recorded /// 0034445 // negative regulation of plasma lipoprotein oxidation // not recorded /// 0046395 // carboxylic acid catabolic process // inferred from electronic annotation /// 0046395 // carboxylic acid catabolic process // not recorded /// 0046434 // organophosphate catabolic process // inferred from electronic annotation /// 0046434 // organophosphate catabolic process // not recorded /// 0046470 // phosphatidylcholine metabolic process // inferred from electronic annotation /// 0046470 // phosphatidylcholine metabolic process // not recorded /// 0051099 // positive regulation of binding // inferred from electronic annotation /// 0051099 // positive regulation of binding // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0034364 // high-density lipoprotein particle // not recorded /// 0034364 // high-density lipoprotein particle // inferred from electronic annotation /// 0034366 // spherical high-density lipoprotein particle // inferred from electronic annotation /// 0034366 // spherical high-density lipoprotein particle // not recorded 0004063 // aryldialkylphosphatase activity // inferred from direct assay /// 0004063 // aryldialkylphosphatase activity // not recorded /// 0004063 // aryldialkylphosphatase activity // inferred from sequence or structural similarity /// 0004063 // aryldialkylphosphatase activity // inferred from electronic annotation /// 0004064 // arylesterase activity // not recorded /// 0004064 // arylesterase activity // inferred from sequence or structural similarity /// 0004064 // arylesterase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0005543 // phospholipid binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1393942_at AI716234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716234 /DB_XREF=gi:5033487 /DB_XREF=UI-R-Y0-abr-d-04-0-UI.s1 /CLONE=UI-R-Y0-abr-d-04-0-UI /FEA=EST /CNT=1 /TID=Rn.40880.1 /TIER=ConsEnd /STK=0 /UG=Rn.40880 /UG_TITLE=EST AI716234 v-crk sarcoma virus CT10 oncogene homolog (avian)-like Crkl 287942 NM_001008284 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0048538 // thymus development // inferred from electronic annotation /// 0048538 // thymus development // not recorded /// 0060017 // parathyroid gland development // inferred from electronic annotation /// 0060017 // parathyroid gland development // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1393943_at AI716693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716693 /DB_XREF=gi:5033949 /DB_XREF=UI-R-Y0-acf-a-10-0-UI.s1 /CLONE=UI-R-Y0-acf-a-10-0-UI /FEA=EST /CNT=1 /TID=Rn.41528.1 /TIER=ConsEnd /STK=0 /UG=Rn.41528 /UG_TITLE=EST AI716693 Matrilin 3 Matn3 313954 NM_001108013 0005578 // proteinaceous extracellular matrix // not recorded 0005515 // protein binding // not recorded 1393944_at AI764505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764505 /DB_XREF=gi:5210440 /DB_XREF=UI-R-Y0-abk-g-03-0-UI.s1 /CLONE=UI-R-Y0-abk-g-03-0-UI /FEA=EST /CNT=1 /TID=Rn.42059.1 /TIER=ConsEnd /STK=0 /UG=Rn.42059 /UG_TITLE=EST AI764505 zinc finger protein 521 Znf521 307579 NM_001107403 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1393945_at AI145487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145487 /DB_XREF=gi:3667286 /DB_XREF=UI-R-BT0-qf-e-10-0-UI.s1 /CLONE=UI-R-BT0-qf-e-10-0-UI /FEA=EST /CNT=1 /TID=Rn.28497.1 /TIER=ConsEnd /STK=0 /UG=Rn.28497 /UG_TITLE=EST AI145487 1393946_at BG377118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377118 /DB_XREF=gi:13301630 /DB_XREF=UI-R-CU0-bvb-b-07-0-UI.s1 /CLONE=UI-R-CU0-bvb-b-07-0-UI /FEA=EST /CNT=1 /TID=Rn.43714.2 /TIER=ConsEnd /STK=0 /UG=Rn.43714 /UG_TITLE=ESTs, Weakly similar to RNA binding protein (R.norvegicus) BG377118 FUS interacting protein (serine-arginine rich) 1 Fusip1 362630 NM_001025738 0000375 // RNA splicing, via transesterification reactions // inferred from electronic annotation /// 0016482 // cytoplasmic transport // inferred from electronic annotation /// 0048025 // negative regulation of nuclear mRNA splicing, via spliceosome // inferred from electronic annotation 0005654 // nucleoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1393947_at BG377383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377383 /DB_XREF=gi:13301855 /DB_XREF=UI-R-CU0-bvc-g-11-0-UI.s1 /CLONE=UI-R-CU0-bvc-g-11-0-UI /FEA=EST /CNT=1 /TID=Rn.66488.1 /TIER=ConsEnd /STK=0 /UG=Rn.66488 /UG_TITLE=EST BG377383 Solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 Slc25a15 306574 NM_001047880 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1393948_at BG380678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380678 /DB_XREF=gi:13305150 /DB_XREF=UI-R-CT0-bua-b-08-0-UI.s1 /CLONE=UI-R-CT0-bua-b-08-0-UI /FEA=EST /CNT=1 /TID=Rn.66762.1 /TIER=ConsEnd /STK=0 /UG=Rn.66762 /UG_TITLE=EST BG380678 cytosolic thiouridylase subunit 1 homolog (S. pombe) Ctu1 292847 NM_001106251 0002098 // tRNA wobble uridine modification // inferred from sequence or structural similarity /// 0008033 // tRNA processing // inferred from electronic annotation /// 0034227 // tRNA thio-modification // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity 0000049 // tRNA binding // inferred from sequence or structural similarity /// 0000049 // tRNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1393949_at BG672094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672094 /DB_XREF=gi:13894193 /DB_XREF=DRNCBH10 /CLONE=DRNCBH10 /FEA=EST /CNT=1 /TID=Rn.72927.2 /TIER=ConsEnd /STK=0 /UG=Rn.72927 /UG_TITLE=ESTs, Weakly similar to HYA1 MOUSE HYALURONIDASE PRECURSOR (M.musculus) BG672094 hyaluronoglucosaminidase 3 Hyal3 300993 NM_207599 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004415 // hyalurononglucosaminidase activity // inferred from electronic annotation /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation 1393950_at BG668519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668519 /DB_XREF=gi:13890441 /DB_XREF=DRABKD07 /CLONE=DRABKD07 /FEA=EST /CNT=1 /TID=Rn.74106.1 /TIER=ConsEnd /STK=0 /UG=Rn.74106 /UG_TITLE=EST BG668519 1393951_at BI302706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302706 /DB_XREF=gi:14978986 /DB_XREF=UI-R-DO0-cix-n-06-0-UI.s1 /CLONE=UI-R-DO0-cix-n-06-0-UI /FEA=EST /CNT=1 /TID=Rn.77402.1 /TIER=ConsEnd /STK=0 /UG=Rn.77402 /UG_TITLE=EST, Weakly similar to T08760 hypothetical protein DKFZp586M1019.1 (H.sapiens) BI302706 1393952_at BI278833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278833 /DB_XREF=gi:14926064 /DB_XREF=UI-R-CX0-bwx-d-10-0-UI.s1 /CLONE=UI-R-CX0-bwx-d-10-0-UI /FEA=EST /CNT=1 /TID=Rn.77852.1 /TIER=ConsEnd /STK=0 /UG=Rn.77852 /UG_TITLE=EST BI278833 coiled-coil domain containing 68 Ccdc68 291530 NM_001077667 1393953_at BI284392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284392 /DB_XREF=gi:14937026 /DB_XREF=UI-R-CX0s-cco-f-02-0-UI.s1 /CLONE=UI-R-CX0s-cco-f-02-0-UI /FEA=EST /CNT=1 /TID=Rn.78472.1 /TIER=ConsEnd /STK=0 /UG=Rn.78472 /UG_TITLE=EST, Weakly similar to EPS8 MOUSE EPIDERMAL GROWTH FACTOR RECEPTOR KINASE SUBSTRATE EPS8 (M.musculus) BI284392 EPS8-like 3 Eps8l3 295361 NM_001106463 0005515 // protein binding // not recorded 1393954_at BI286468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286468 /DB_XREF=gi:14941145 /DB_XREF=UI-R-DE0-cal-d-09-0-UI.s1 /CLONE=UI-R-DE0-cal-d-09-0-UI /FEA=EST /CNT=1 /TID=Rn.78674.1 /TIER=ConsEnd /STK=0 /UG=Rn.78674 /UG_TITLE=EST, Weakly similar to T14746 hypothetical protein DKFZp586N2124.1 (H.sapiens) BI286468 chordin-like 2 Chrdl2 308854 NM_001107537 0030154 // cell differentiation // not recorded /// 0030514 // negative regulation of BMP signaling pathway // not recorded 0005739 // mitochondrion // not recorded 0005515 // protein binding // not recorded 1393955_at BI293101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293101 /DB_XREF=gi:14954275 /DB_XREF=UI-R-DK0-cdp-e-10-0-UI.s1 /CLONE=UI-R-DK0-cdp-e-10-0-UI /FEA=EST /CNT=1 /TID=Rn.79380.1 /TIER=ConsEnd /STK=0 /UG=Rn.79380 /UG_TITLE=EST BI293101 WD repeat domain 44 Wdr44 246152 XM_001061437 /// XM_343761 0030334 // regulation of cell migration // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0017137 // Rab GTPase binding // inferred from direct assay 1393956_at BI294556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294556 /DB_XREF=gi:14957122 /DB_XREF=UI-R-DK0-cel-f-04-0-UI.s1 /CLONE=UI-R-DK0-cel-f-04-0-UI /FEA=EST /CNT=1 /TID=Rn.79595.1 /TIER=ConsEnd /STK=0 /UG=Rn.79595 /UG_TITLE=EST BI294556 1393957_at AI548358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548358 /DB_XREF=gi:4465846 /DB_XREF=UI-R-C3-td-e-06-0-UI.s1 /CLONE=UI-R-C3-td-e-06-0-UI /FEA=EST /CNT=1 /TID=Rn.41691.1 /TIER=ConsEnd /STK=0 /UG=Rn.41691 /UG_TITLE=EST AI548358 1393958_at AA819795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819795 /DB_XREF=gi:4228052 /DB_XREF=UI-R-A0-aq-f-05-0-UI.s1 /CLONE=UI-R-A0-aq-f-05-0-UI /FEA=EST /CNT=1 /TID=Rn.16665.1 /TIER=ConsEnd /STK=0 /UG=Rn.16665 /UG_TITLE=EST AA819795 1393959_at BI293249 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293249 /DB_XREF=gi:14954572 /DB_XREF=UI-R-DK0-cdm-f-01-0-UI.s1 /CLONE=UI-R-DK0-cdm-f-01-0-UI /FEA=EST /CNT=1 /TID=Rn.79404.1 /TIER=ConsEnd /STK=0 /UG=Rn.79404 /UG_TITLE=EST BI293249 1393960_at AI072197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072197 /DB_XREF=gi:3398391 /DB_XREF=UI-R-C2-nl-e-08-0-UI.s1 /CLONE=UI-R-C2-nl-e-08-0-UI /FEA=EST /CNT=1 /TID=Rn.20086.1 /TIER=ConsEnd /STK=0 /UG=Rn.20086 /UG_TITLE=EST AI072197 1393961_at AA926088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926088 /DB_XREF=gi:4237279 /DB_XREF=UI-R-A1-eu-b-09-0-UI.s1 /CLONE=UI-R-A1-eu-b-09-0-UI /FEA=EST /CNT=1 /TID=Rn.34561.2 /TIER=ConsEnd /STK=0 /UG=Rn.34561 /UG_TITLE=ESTs AA926088 1393962_at BI288778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288778 /DB_XREF=gi:14945684 /DB_XREF=UI-R-DK0-cde-g-10-0-UI.s1 /CLONE=UI-R-DK0-cde-g-10-0-UI /FEA=EST /CNT=1 /TID=Rn.78942.1 /TIER=ConsEnd /STK=0 /UG=Rn.78942 /UG_TITLE=EST BI288778 1393963_at BF542548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542548 /DB_XREF=gi:11633655 /DB_XREF=UI-R-C3-sk-f-08-0-UI.r1 /CLONE=UI-R-C3-sk-f-08-0-UI /FEA=EST /CNT=1 /TID=Rn.14632.2 /TIER=ConsEnd /STK=0 /UG=Rn.14632 /UG_TITLE=ESTs, Weakly similar to END3_CAEEL Probable endonuclease III homolog (DNA-(Apurinic or apyrimidinic site) lyase) (C.elegans) BF542548 nth (endonuclease III)-like 1 (E.coli) Nthl1 29541 NM_001105728 0006281 // DNA repair // inferred from electronic annotation /// 0006284 // base-excision repair // inferred from electronic annotation /// 0006285 // base-excision repair, AP site formation // not recorded /// 0006296 // nucleotide-excision repair, DNA incision, 5'-to lesion // not recorded /// 0045008 // depyrimidination // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005739 // mitochondrion // not recorded 0000703 // oxidized pyrimidine base lesion DNA N-glycosylase activity // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003906 // DNA-(apurinic or apyrimidinic site) lyase activity // not recorded /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019104 // DNA N-glycosylase activity // not recorded /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 1393964_at AW921168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921168 /DB_XREF=gi:8086989 /DB_XREF=EST352472 /CLONE=RGIHP20 /FEA=EST /CNT=1 /TID=Rn.17941.2 /TIER=ConsEnd /STK=0 /UG=Rn.17941 /UG_TITLE=ESTs, Weakly similar to PMX1 MOUSE PAIRED MESODERM HOMEOBOX PROTEIN 1 (R.norvegicus) AW921168 reproductive homeobox 9-like /// reproductive homeobox 9 LOC100364002 /// Rhox9 100364002 /// 298352 NM_001024874 /// XM_002727673 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1393965_at BE113438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113438 /DB_XREF=gi:8505543 /DB_XREF=UI-R-BJ1-awl-d-01-0-UI.s1 /CLONE=UI-R-BJ1-awl-d-01-0-UI /FEA=EST /CNT=1 /TID=Rn.26603.2 /TIER=ConsEnd /STK=0 /UG=Rn.26603 /UG_TITLE=ESTs BE113438 1393966_at AW530825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530825 /DB_XREF=gi:7173239 /DB_XREF=UI-R-C4-alb-h-06-0-UI.s1 /CLONE=UI-R-C4-alb-h-06-0-UI /FEA=EST /CNT=1 /TID=Rn.35586.2 /TIER=ConsEnd /STK=0 /UG=Rn.35586 /UG_TITLE=ESTs, Moderately similar to T09061 PBX2 protein - mouse (M.musculus) AW530825 pre-B-cell leukemia homeobox 1 Pbx1 304947 NM_001100681 /// NM_001134862 0001655 // urogenital system development // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0009887 // organ morphogenesis // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009954 // proximal/distal pattern formation // not recorded /// 0030278 // regulation of ossification // not recorded /// 0030325 // adrenal gland development // not recorded /// 0030326 // embryonic limb morphogenesis // not recorded /// 0035162 // embryonic hemopoiesis // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048536 // spleen development // not recorded /// 0048538 // thymus development // not recorded /// 0048568 // embryonic organ development // not recorded /// 0048706 // embryonic skeletal system development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1393967_at AI764726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764726 /DB_XREF=gi:5210661 /DB_XREF=UI-R-Y0-ace-d-05-0-UI.s1 /CLONE=UI-R-Y0-ace-d-05-0-UI /FEA=EST /CNT=1 /TID=Rn.41816.1 /TIER=ConsEnd /STK=0 /UG=Rn.41816 /UG_TITLE=EST AI764726 1393968_at BF567034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567034 /DB_XREF=gi:11676812 /DB_XREF=UI-R-BJ0p-agj-h-01-0-UI.r1 /CLONE=UI-R-BJ0p-agj-h-01-0-UI /FEA=EST /CNT=1 /TID=Rn.45305.2 /TIER=ConsEnd /STK=0 /UG=Rn.45305 /UG_TITLE=ESTs BF567034 scavenger receptor class F, member 1 Scarf1 303313 NM_001107022 0016358 // dendrite development // not recorded 0016021 // integral to membrane // not recorded 0005044 // scavenger receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0030169 // low-density lipoprotein binding // not recorded 1393969_at BF563047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563047 /DB_XREF=gi:11672777 /DB_XREF=UI-R-BO1-aiw-h-03-0-UI.r1 /CLONE=UI-R-BO1-aiw-h-03-0-UI /FEA=EST /CNT=1 /TID=Rn.46050.2 /TIER=ConsEnd /STK=0 /UG=Rn.46050 /UG_TITLE=ESTs BF563047 1393970_at AW528808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528808 /DB_XREF=gi:7171222 /DB_XREF=UI-R-BT1-aki-h-01-0-UI.s1 /CLONE=UI-R-BT1-aki-h-01-0-UI /FEA=EST /CNT=1 /TID=Rn.47014.1 /TIER=ConsEnd /STK=0 /UG=Rn.47014 /UG_TITLE=ESTs AW528808 lysine (K)-specific demethylase 4D Kdm4d 689582 NM_001079712 0006350 // transcription // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1393971_at AW535616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535616 /DB_XREF=gi:7178030 /DB_XREF=UI-R-C4-aly-h-12-0-UI.s1 /CLONE=UI-R-C4-aly-h-12-0-UI /FEA=EST /CNT=1 /TID=Rn.48527.1 /TIER=ConsEnd /STK=0 /UG=Rn.48527 /UG_TITLE=ESTs AW535616 1393972_at BE096871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096871 /DB_XREF=gi:8487802 /DB_XREF=UI-R-BO1-app-f-07-0-UI.s1 /CLONE=UI-R-BO1-app-f-07-0-UI /FEA=EST /CNT=1 /TID=Rn.49486.1 /TIER=ConsEnd /STK=0 /UG=Rn.49486 /UG_TITLE=EST BE096871 1393973_at BI289001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289001 /DB_XREF=gi:14946126 /DB_XREF=UI-R-DK0-cdh-d-02-0-UI.s1 /CLONE=UI-R-DK0-cdh-d-02-0-UI /FEA=EST /CNT=1 /TID=Rn.78978.1 /TIER=ConsEnd /STK=0 /UG=Rn.78978 /UG_TITLE=EST BI289001 hypothetical protein LOC687399 LOC687399 687399 NM_001101015 1393974_at AA964645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964645 /DB_XREF=gi:4279519 /DB_XREF=UI-R-C0-ha-b-10-0-UI.s1 /CLONE=UI-R-C0-ha-b-10-0-UI /FEA=EST /CNT=1 /TID=Rn.32996.1 /TIER=ConsEnd /STK=0 /UG=Rn.32996 /UG_TITLE=EST AA964645 mesenchyme homeobox 1 Meox1 363684 NM_001108837 0001757 // somite specification // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1393975_a_at BF550897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550897 /DB_XREF=gi:11660627 /DB_XREF=UI-R-C1-jz-g-04-0-UI.r1 /CLONE=UI-R-C1-jz-g-04-0-UI /FEA=EST /CNT=1 /TID=Rn.16254.2 /TIER=ConsEnd /STK=0 /UG=Rn.16254 /UG_TITLE=ESTs BF550897 family with sequence similarity 132, member A Fam132a 313774 NM_001108000 1393976_at BE110459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110459 /DB_XREF=gi:8502564 /DB_XREF=UI-R-BJ1-auo-c-05-0-UI.s1 /CLONE=UI-R-BJ1-auo-c-05-0-UI /FEA=EST /CNT=1 /TID=Rn.51897.1 /TIER=ConsEnd /STK=0 /UG=Rn.51897 /UG_TITLE=EST BE110459 Stem-loop binding protein Slbp 681062 NM_001130988 0033260 // DNA replication involved in S phase // not recorded /// 0033261 // regulation of S phase // not recorded /// 0051028 // mRNA transport // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // not recorded 0003729 // mRNA binding // not recorded /// 0005515 // protein binding // not recorded 1393977_at BI288958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288958 /DB_XREF=gi:14946041 /DB_XREF=UI-R-DK0-cdi-f-08-0-UI.s1 /CLONE=UI-R-DK0-cdi-f-08-0-UI /FEA=EST /CNT=1 /TID=Rn.78970.1 /TIER=ConsEnd /STK=0 /UG=Rn.78970 /UG_TITLE=EST BI288958 1393978_at BF415134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415134 /DB_XREF=gi:11403123 /DB_XREF=UI-R-BJ2-bov-c-04-0-UI.s1 /CLONE=UI-R-BJ2-bov-c-04-0-UI /FEA=EST /CNT=1 /TID=Rn.62642.1 /TIER=ConsEnd /STK=0 /UG=Rn.62642 /UG_TITLE=EST, Weakly similar to CYSTATIN ALPHA (R.norvegicus) BF415134 stefin A2-like 3 Stfa2l3 498087 XM_573293 0005622 // intracellular // inferred from electronic annotation 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation 1393979_at AA875203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875203 /DB_XREF=gi:4231082 /DB_XREF=UI-R-E0-cu-d-09-0-UI.s1 /CLONE=UI-R-E0-cu-d-09-0-UI /FEA=EST /CNT=1 /TID=Rn.2828.1 /TIER=ConsEnd /STK=0 /UG=Rn.2828 /UG_TITLE=EST AA875203 1393980_at AW522502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522502 /DB_XREF=gi:7164887 /DB_XREF=UI-R-BO0-aha-b-08-0-UI.s1 /CLONE=UI-R-BO0-aha-b-08-0-UI /FEA=EST /CNT=1 /TID=Rn.45407.1 /TIER=ConsEnd /STK=0 /UG=Rn.45407 /UG_TITLE=EST AW522502 1393981_at BF567629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567629 /DB_XREF=gi:11677359 /DB_XREF=UI-R-BO0-ags-c-01-0-UI.r1 /CLONE=UI-R-BO0-ags-c-01-0-UI /FEA=EST /CNT=1 /TID=Rn.64256.2 /TIER=ConsEnd /STK=0 /UG=Rn.64256 /UG_TITLE=ESTs, Moderately similar to T00057 hypothetical protein KIAA0423 (H.sapiens) BF567629 family with sequence similarity 179, member B Fam179b 314169 XM_002726743 /// XM_234236 0005488 // binding // inferred from electronic annotation 1393982_at AI070935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070935 /DB_XREF=gi:3397186 /DB_XREF=UI-R-C2-na-a-01-0-UI.s1 /CLONE=UI-R-C2-na-a-01-0-UI /FEA=EST /CNT=1 /TID=Rn.19885.1 /TIER=ConsEnd /STK=0 /UG=Rn.19885 /UG_TITLE=EST, Highly similar to DPE2 MOUSE DNA POLYMERASE EPSILON SUBUNIT B (M.musculus) AI070935 polymerase (DNA directed), epsilon 2 (p59 subunit) Pole2 299112 NM_001169108 0006260 // DNA replication // inferred from electronic annotation /// 0006261 // DNA-dependent DNA replication // inferred from electronic annotation /// 0006297 // nucleotide-excision repair, DNA gap filling // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation 1393983_at AA998204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998204 /DB_XREF=gi:4288243 /DB_XREF=UI-R-C0-ib-b-12-0-UI.s1 /CLONE=UI-R-C0-ib-b-12-0-UI /FEA=EST /CNT=1 /TID=Rn.72761.1 /TIER=ConsEnd /STK=0 /UG=Rn.72761 /UG_TITLE=ESTs AA998204 exportin, tRNA (nuclear export receptor for tRNAs) Xpot 314879 NM_001108102 0006409 // tRNA export from nucleus // not recorded /// 0006886 // intracellular protein transport // inferred from electronic annotation 0005643 // nuclear pore // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded 0000049 // tRNA binding // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 1393984_at BF521686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF521686 /DB_XREF=gi:11629653 /DB_XREF=UI-R-E1-gm-a-03-0-UI.r1 /CLONE=UI-R-E1-gm-a-03-0-UI /FEA=EST /CNT=1 /TID=Rn.72381.1 /TIER=ConsEnd /STK=0 /UG=Rn.72381 /UG_TITLE=EST BF521686 1393985_at AI072539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072539 /DB_XREF=gi:3398733 /DB_XREF=UI-R-C2-ni-e-02-0-UI.s1 /CLONE=UI-R-C2-ni-e-02-0-UI /FEA=EST /CNT=1 /TID=Rn.14717.2 /TIER=ConsEnd /STK=0 /UG=Rn.14717 /UG_TITLE=ESTs, Highly similar to T50839 U4U6 small nuclear ribonucleoprotein hPrp3 (H.sapiens) AI072539 PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae) Prpf3 361995 NM_001108559 0006397 // mRNA processing // inferred from electronic annotation 0015030 // Cajal body // not recorded 0005515 // protein binding // not recorded 1393986_at BF386455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386455 /DB_XREF=gi:11371279 /DB_XREF=UI-R-CA1-bbd-f-12-0-UI.s1 /CLONE=UI-R-CA1-bbd-f-12-0-UI /FEA=EST /CNT=1 /TID=Rn.56275.1 /TIER=ConsEnd /STK=0 /UG=Rn.56275 /UG_TITLE=EST, Weakly similar to HMG2 RAT HIGH MOBILITY GROUP PROTEIN HMG2 (R.norvegicus) BF386455 high-mobility group box 4 Hmgb4 685271 NM_001109463 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1393987_s_at BI274742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274742 /DB_XREF=gi:14885952 /DB_XREF=UI-R-CX0-bxd-e-01-0-UI.s1 /CLONE=UI-R-CX0-bxd-e-01-0-UI /FEA=EST /CNT=1 /TID=Rn.80003.1 /TIER=ConsEnd /STK=0 /UG=Rn.80003 /UG_TITLE=EST BI274742 G protein-coupled receptor kinase 6 Grk6 59076 NM_001112712 /// NM_001112713 /// NM_031657 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004703 // G-protein coupled receptor kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1393988_at AA860014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA860014 /DB_XREF=gi:4230546 /DB_XREF=UI-R-E0-ca-c-11-0-UI.s1 /CLONE=UI-R-E0-ca-c-11-0-UI /FEA=EST /CNT=1 /TID=Rn.42238.1 /TIER=ConsEnd /STK=0 /UG=Rn.42238 /UG_TITLE=EST, Moderately similar to 2206405A hemoglobin:SUBUNIT=zeta (R.norvegicus) AA860014 1393989_at BE103116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103116 /DB_XREF=gi:8495215 /DB_XREF=UI-R-BX0-are-f-05-0-UI.s1 /CLONE=UI-R-BX0-are-f-05-0-UI /FEA=EST /CNT=1 /TID=Rn.50475.1 /TIER=ConsEnd /STK=0 /UG=Rn.50475 /UG_TITLE=EST BE103116 1393990_at AA956230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956230 /DB_XREF=gi:4238624 /DB_XREF=UI-R-E1-fi-d-11-0-UI.s1 /CLONE=UI-R-E1-fi-d-11-0-UI /FEA=EST /CNT=1 /TID=Rn.9581.1 /TIER=ConsEnd /STK=0 /UG=Rn.9581 /UG_TITLE=ESTs AA956230 zinc finger protein 503 Znf503 305687 NM_001107250 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1393991_x_at AW520508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520508 /DB_XREF=gi:7162886 /DB_XREF=UI-R-BJ0p-afx-c-08-0-UI.s1 /CLONE=UI-R-BJ0p-afx-c-08-0-UI /FEA=EST /CNT=1 /TID=Rn.45041.1 /TIER=ConsEnd /STK=0 /UG=Rn.45041 /UG_TITLE=EST AW520508 ubiquitin-conjugating enzyme E2 variant 1 Ube2v1 296390 NM_001110345 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1393992_at AA996507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996507 /DB_XREF=gi:4280274 /DB_XREF=UI-R-C0-he-b-10-0-UI.s1 /CLONE=UI-R-C0-he-b-10-0-UI /FEA=EST /CNT=1 /TID=Rn.33028.1 /TIER=ConsEnd /STK=0 /UG=Rn.33028 /UG_TITLE=EST, Highly similar to HOMEOBOX PROTEIN HOX-A7 (R.norvegicus) AA996507 homeobox A9 Hoxa9 500126 NM_001109233 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001953 // negative regulation of cell-matrix adhesion // inferred from electronic annotation /// 0002686 // negative regulation of leukocyte migration // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009954 // proximal/distal pattern formation // not recorded /// 0030879 // mammary gland development // not recorded /// 0035115 // embryonic forelimb morphogenesis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045617 // negative regulation of keratinocyte differentiation // inferred from electronic annotation /// 0045656 // negative regulation of monocyte differentiation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // not recorded /// 0060216 // definitive hemopoiesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1393993_at AA866294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866294 /DB_XREF=gi:4229404 /DB_XREF=UI-R-A0-ac-f-04-0-UI.s3 /CLONE=UI-R-A0-ac-f-04-0-UI /FEA=EST /CNT=1 /TID=Rn.3047.1 /TIER=ConsEnd /STK=0 /UG=Rn.3047 /UG_TITLE=EST AA866294 1393994_at BF522463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522463 /DB_XREF=gi:11630430 /DB_XREF=UI-R-C3-ua-g-01-0-UI.r1 /CLONE=UI-R-C3-ua-g-01-0-UI /FEA=EST /CNT=1 /TID=Rn.44200.2 /TIER=ConsEnd /STK=0 /UG=Rn.44200 /UG_TITLE=ESTs, Highly similar to SL CYTOKINE PRECURSOR (M.musculus) BF522463 rCG54594-like /// rCG54594-like LOC100363556 /// LOC100364879 100363556 /// 100364879 XM_002725577 /// XM_002728753 0016020 // membrane // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation 1393995_at AW534561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534561 /DB_XREF=gi:7176975 /DB_XREF=UI-R-C4-alt-a-06-0-UI.s1 /CLONE=UI-R-C4-alt-a-06-0-UI /FEA=EST /CNT=1 /TID=Rn.48356.1 /TIER=ConsEnd /STK=0 /UG=Rn.48356 /UG_TITLE=EST AW534561 1393996_at BF549785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549785 /DB_XREF=gi:11659515 /DB_XREF=UI-R-A0-az-f-02-0-UI.r1 /CLONE=UI-R-A0-az-f-02-0-UI /FEA=EST /CNT=1 /TID=Rn.25329.2 /TIER=ConsEnd /STK=0 /UG=Rn.25329 /UG_TITLE=ESTs, Weakly similar to DNAJ protein like (Caenorhabditis elegans) (C.elegans) BF549785 DnaJ (Hsp40) homolog, subfamily B, member 14 Dnajb14 499716 NM_001109193 /// XM_001078145 /// XM_002726044 /// XM_002729123 /// XM_575045 0006457 // protein folding // inferred from electronic annotation 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1393997_at AI556333 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556333 /DB_XREF=gi:4488696 /DB_XREF=UI-R-C2p-rg-b-11-0-UI.s1 /CLONE=UI-R-C2p-rg-b-11-0-UI /FEA=EST /CNT=1 /TID=Rn.38213.1 /TIER=ConsEnd /STK=0 /UG=Rn.38213 /UG_TITLE=EST AI556333 similar to hypothetical protein FLJ32825 RGD1564257 500595 NM_001163723 1393998_at BF408529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408529 /DB_XREF=gi:11396504 /DB_XREF=UI-R-BJ2-bre-h-02-0-UI.s1 /CLONE=UI-R-BJ2-bre-h-02-0-UI /FEA=EST /CNT=1 /TID=Rn.61149.1 /TIER=ConsEnd /STK=0 /UG=Rn.61149 /UG_TITLE=EST, Highly similar to GA binding protein (M.musculus) BF408529 GA repeat binding protein, beta 1 /// GA binding protein transcription factor, beta subunit 1-like Gabpb1 /// Gabpb1l 364738 /// 499883 NM_001039036 /// NM_001135015 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1393999_at AI060127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060127 /DB_XREF=gi:3333904 /DB_XREF=UI-R-C1-ll-b-05-0-UI.s1 /CLONE=UI-R-C1-ll-b-05-0-UI /FEA=EST /CNT=1 /TID=Rn.19373.1 /TIER=ConsEnd /STK=0 /UG=Rn.19373 /UG_TITLE=EST AI060127 Hypothetical protein LOC100192314 LOC100192314 100192314 NM_001136272 1394000_at BM391003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391003 /DB_XREF=gi:18191056 /DB_XREF=UI-R-CN1-cjm-k-11-0-UI.s1 /CLONE=UI-R-CN1-cjm-k-11-0-UI /FEA=EST /CNT=1 /TID=Rn.41785.2 /TIER=ConsEnd /STK=0 /UG=Rn.41785 /UG_TITLE=ESTs BM391003 hypothetical protein LOC681433 LOC681433 681433 XM_002725484 1394001_at BM384538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384538 /DB_XREF=gi:18184591 /DB_XREF=UI-R-CN1-cjs-l-13-0-UI.s2 /CLONE=UI-R-CN1-cjs-l-13-0-UI /FEA=EST /CNT=1 /TID=Rn.81449.1 /TIER=ConsEnd /STK=0 /UG=Rn.81449 /UG_TITLE=EST BM384538 Opticin Optc 304802 NM_001107176 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394002_at BM390752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390752 /DB_XREF=gi:18190800 /DB_XREF=UI-R-CN1-cjr-j-15-0-UI.s1 /CLONE=UI-R-CN1-cjr-j-15-0-UI /FEA=EST /CNT=1 /TID=Rn.82522.1 /TIER=ConsEnd /STK=0 /UG=Rn.82522 /UG_TITLE=EST BM390752 1394003_at BF522722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522722 /DB_XREF=gi:11630689 /DB_XREF=UI-R-G0-uu-g-11-0-UI.r1 /CLONE=UI-R-G0-uu-g-11-0-UI /FEA=EST /CNT=1 /TID=Rn.16446.2 /TIER=ConsEnd /STK=0 /UG=Rn.16446 /UG_TITLE=ESTs, Weakly similar to CBFA MOUSE CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT A (R.norvegicus) BF522722 polymerase (DNA directed), epsilon 3 (p17 subunit) Pole3 298098 NM_001007652 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1394004_at AI070716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070716 /DB_XREF=gi:3396967 /DB_XREF=UI-R-C2-mx-g-12-0-UI.s1 /CLONE=UI-R-C2-mx-g-12-0-UI /FEA=EST /CNT=1 /TID=Rn.21348.1 /TIER=ConsEnd /STK=0 /UG=Rn.21348 /UG_TITLE=EST AI070716 1394005_s_at BE115762 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115762 /DB_XREF=gi:8507867 /DB_XREF=UI-R-CA0-axs-e-12-0-UI.s1 /CLONE=UI-R-CA0-axs-e-12-0-UI /FEA=EST /CNT=1 /TID=Rn.52563.1 /TIER=ConsEnd /STK=0 /UG=Rn.52563 /UG_TITLE=EST, Highly similar to 2207342A SRB protein (H.sapiens) BE115762 mediator complex subunit 21 Med21 312849 NM_001107895 0001824 // blastocyst development // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0016592 // mediator complex // not recorded 0003713 // transcription coactivator activity // not recorded /// 0005515 // protein binding // not recorded 1394006_at AA899618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899618 /DB_XREF=gi:4232116 /DB_XREF=UI-R-E0-cy-h-10-0-UI.s1 /CLONE=UI-R-E0-cy-h-10-0-UI /FEA=EST /CNT=1 /TID=Rn.42427.1 /TIER=ConsEnd /STK=0 /UG=Rn.42427 /UG_TITLE=EST, Moderately similar to TPCS MOUSE TROPONIN C, SKELETAL MUSCLE (M.musculus) AA899618 Proteasome (prosome, macropain) activator subunit 1 Psme1 29630 NM_017264 0010950 // positive regulation of endopeptidase activity // not recorded /// 0019884 // antigen processing and presentation of exogenous antigen // not recorded /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation /// 0008537 // proteasome activator complex // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0061133 // endopeptidase activator activity // not recorded 1394007_at AI144723 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144723 /DB_XREF=gi:3666522 /DB_XREF=UI-R-BT0-po-b-03-0-UI.s1 /CLONE=UI-R-BT0-po-b-03-0-UI /FEA=EST /CNT=1 /TID=Rn.27657.1 /TIER=ConsEnd /STK=0 /UG=Rn.27657 /UG_TITLE=EST AI144723 protamine 1 Prm1 24685 NM_001002850 0006997 // nucleus organization // inferred from electronic annotation /// 0006997 // nucleus organization // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007286 // spermatid development // inferred from electronic annotation /// 0007286 // spermatid development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030261 // chromosome condensation // inferred from electronic annotation 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation 1394008_x_at BF562455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562455 /DB_XREF=gi:11672233 /DB_XREF=UI-R-BU0-ani-a-05-0-UI.r1 /CLONE=UI-R-BU0-ani-a-05-0-UI /FEA=EST /CNT=1 /TID=Rn.55036.2 /TIER=ConsEnd /STK=0 /UG=Rn.55036 /UG_TITLE=ESTs BF562455 ciliary neurotrophic factor receptor Cntfr 313173 NM_001003929 0008284 // positive regulation of cell proliferation // not recorded /// 0070120 // ciliary neurotrophic factor-mediated signaling pathway // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004896 // cytokine receptor activity // inferred from electronic annotation /// 0004897 // ciliary neurotrophic factor receptor activity // inferred from mutant phenotype /// 0004897 // ciliary neurotrophic factor receptor activity // not recorded /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0019955 // cytokine binding // inferred from physical interaction /// 0019955 // cytokine binding // not recorded 1394009_at BI288530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288530 /DB_XREF=gi:14945207 /DB_XREF=UI-R-DK0-cdg-a-02-0-UI.s1 /CLONE=UI-R-DK0-cdg-a-02-0-UI /FEA=EST /CNT=1 /TID=Rn.78909.1 /TIER=ConsEnd /STK=0 /UG=Rn.78909 /UG_TITLE=EST BI288530 1394010_at H32100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H32100 /DB_XREF=gi:977517 /DB_XREF=EST106891 /CLONE=RPCBH42 /FEA=EST /CNT=1 /TID=Rn.69014.2 /TIER=ConsEnd /STK=0 /UG=Rn.69014 /UG_TITLE=ESTs, Weakly similar to REQN RAT ZINC-FINGER PROTEIN NEURO-D4 (R.norvegicus) H32100 remodeling and spacing factor 1 Rsf1 308839 XM_001064125 /// XM_218939 0006334 // nucleosome assembly // not recorded /// 0006338 // chromatin remodeling // not recorded /// 0006352 // transcription initiation // not recorded /// 0016584 // nucleosome positioning // not recorded /// 0043392 // negative regulation of DNA binding // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0050434 // positive regulation of viral transcription // not recorded 0005634 // nucleus // not recorded /// 0031213 // RSF complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016887 // ATPase activity // not recorded /// 0042393 // histone binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1394011_at BF543825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543825 /DB_XREF=gi:11634932 /DB_XREF=UI-R-C3-te-d-04-0-UI.r1 /CLONE=UI-R-C3-te-d-04-0-UI /FEA=EST /CNT=1 /TID=Rn.28442.2 /TIER=ConsEnd /STK=0 /UG=Rn.28442 /UG_TITLE=ESTs BF543825 Bardet-Biedl syndrome 7 Bbs7 361930 NM_001012180 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045444 // fat cell differentiation // not recorded 0034464 // BBSome // inferred from electronic annotation /// 0034464 // BBSome // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394012_at BI303933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303933 /DB_XREF=gi:14980213 /DB_XREF=UI-R-DR0-cjb-n-22-0-UI.s1 /CLONE=UI-R-DR0-cjb-n-22-0-UI /FEA=EST /CNT=4 /TID=Rn.25.1 /TIER=ConsEnd /STK=2 /UG=Rn.25 /UG_TITLE=ESTs BI303933 1394014_at AA924840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924840 /DB_XREF=gi:4236031 /DB_XREF=UI-R-A1-eg-h-07-0-UI.s1 /CLONE=UI-R-A1-eg-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.15405.1 /TIER=ConsEnd /STK=2 /UG=Rn.15405 /UG_TITLE=ESTs AA924840 PHD finger protein 12 Phf12 303274 NM_001013117 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0017053 // transcriptional repressor complex // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1394015_at AA965157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965157 /DB_XREF=gi:4280031 /DB_XREF=UI-R-C0-hc-h-12-0-UI.s1 /CLONE=UI-R-C0-hc-h-12-0-UI /FEA=EST /CNT=4 /TID=Rn.12021.1 /TIER=ConsEnd /STK=2 /UG=Rn.12021 /UG_TITLE=ESTs AA965157 1394018_at BF417907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417907 /DB_XREF=gi:11405896 /DB_XREF=UI-R-CA1-blu-g-04-0-UI.s1 /CLONE=UI-R-CA1-blu-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.43836.1 /TIER=ConsEnd /STK=2 /UG=Rn.43836 /UG_TITLE=ESTs BF417907 1394019_at BI283971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283971 /DB_XREF=gi:14936212 /DB_XREF=UI-R-DB0-byq-g-08-0-UI.s1 /CLONE=UI-R-DB0-byq-g-08-0-UI /FEA=EST /CNT=8 /TID=Rn.7465.1 /TIER=ConsEnd /STK=0 /UG=Rn.7465 /UG_TITLE=ESTs BI283971 1394020_at AI412164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412164 /DB_XREF=gi:4255668 /DB_XREF=EST240458 /CLONE=RKIEG88 /FEA=EST /CNT=5 /TID=Rn.44086.1 /TIER=ConsEnd /STK=1 /UG=Rn.44086 /UG_TITLE=ESTs AI412164 1394022_at BE116009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116009 /DB_XREF=gi:8508114 /DB_XREF=UI-R-BS1-axy-d-11-0-UI.s1 /CLONE=UI-R-BS1-axy-d-11-0-UI /FEA=EST /CNT=5 /TID=Rn.22987.1 /TIER=ConsEnd /STK=1 /UG=Rn.22987 /UG_TITLE=ESTs BE116009 inhibitor of DNA binding 4 Id4 291023 NM_175582 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0007405 // neuroblast proliferation // inferred from electronic annotation /// 0007405 // neuroblast proliferation // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0021895 // cerebral cortex neuron differentiation // inferred from electronic annotation /// 0021895 // cerebral cortex neuron differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0048712 // negative regulation of astrocyte differentiation // inferred from electronic annotation /// 0048712 // negative regulation of astrocyte differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1394025_at AW434781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434781 /DB_XREF=gi:6966128 /DB_XREF=UI-R-BJ0p-agf-e-05-0-UI.s1 /CLONE=UI-R-BJ0p-agf-e-05-0-UI /FEA=EST /CNT=4 /TID=Rn.42472.1 /TIER=ConsEnd /STK=0 /UG=Rn.42472 /UG_TITLE=ESTs, Weakly similar to SMA7_RAT MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG 7 (SMAD 7) (MOTHERS AGAINST DPP HOMOLOG 7) (SMAD7) (R.norvegicus) AW434781 SMAD family member 6 Smad6 367100 NM_001109002 0001657 // ureteric bud development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006955 // immune response // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007352 // zygotic specification of dorsal/ventral axis // not recorded /// 0010991 // negative regulation of SMAD protein complex assembly // not recorded /// 0030509 // BMP signaling pathway // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0034616 // response to laminar fluid shear stress // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043154 // negative regulation of caspase activity // not recorded /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045750 // positive regulation of S phase of mitotic cell cycle // not recorded /// 0060394 // negative regulation of pathway-restricted SMAD protein phosphorylation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030617 // transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity // not recorded /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0034713 // type I transforming growth factor beta receptor binding // not recorded /// 0070410 // co-SMAD binding // not recorded /// 0070411 // I-SMAD binding // not recorded /// 0070412 // R-SMAD binding // not recorded /// 0070698 // type I activin receptor binding // not recorded 1394026_at AA875227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875227 /DB_XREF=gi:4231105 /DB_XREF=UI-R-E0-cq-a-09-0-UI.s1 /CLONE=UI-R-E0-cq-a-09-0-UI /FEA=EST /CNT=4 /TID=Rn.3266.1 /TIER=ConsEnd /STK=0 /UG=Rn.3266 /UG_TITLE=ESTs AA875227 1394027_at AI179798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179798 /DB_XREF=gi:4135193 /DB_XREF=EST223528 /CLONE=RSPCL96 /FEA=EST /CNT=4 /TID=Rn.31447.1 /TIER=ConsEnd /STK=1 /UG=Rn.31447 /UG_TITLE=ESTs AI179798 nucleoporin 62 C-terminal like Nup62cl 300923 XM_001053696 /// XM_217225 0005643 // nuclear pore // inferred from electronic annotation 0017056 // structural constituent of nuclear pore // inferred from electronic annotation 1394028_at AW916472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916472 /DB_XREF=gi:8082198 /DB_XREF=EST347776 /CLONE=RGIDQ63 /FEA=EST /CNT=3 /TID=Rn.38766.1 /TIER=ConsEnd /STK=0 /UG=Rn.38766 /UG_TITLE=ESTs AW916472 dual specificity phosphatase 10 Dusp10 63995 NM_001105734 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from expression pattern /// 0016311 // dephosphorylation // inferred from electronic annotation 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation 1394029_at BF283049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283049 /DB_XREF=gi:11214119 /DB_XREF=EST447640 /CLONE=RGIDW75 /FEA=EST /CNT=3 /TID=Rn.24669.1 /TIER=ConsEnd /STK=1 /UG=Rn.24669 /UG_TITLE=ESTs BF283049 1394031_at AA800742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800742 /DB_XREF=gi:2863697 /DB_XREF=EST190239 /CLONE=RLUAK90 /FEA=EST /CNT=3 /TID=Rn.55931.1 /TIER=ConsEnd /STK=1 /UG=Rn.55931 /UG_TITLE=ESTs AA800742 family with sequence similarity 83, member D Fam83d 311598 NM_001107796 1394033_at AA956258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956258 /DB_XREF=gi:4238652 /DB_XREF=UI-R-E1-fe-g-06-0-UI.s1 /CLONE=UI-R-E1-fe-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.31757.1 /TIER=ConsEnd /STK=1 /UG=Rn.31757 /UG_TITLE=ESTs AA956258 retinoblastoma binding protein 9 Rbbp9 29459 NM_019219 0042127 // regulation of cell proliferation // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation 1394034_at AI764372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764372 /DB_XREF=gi:5210307 /DB_XREF=UI-R-Y0-abj-b-06-0-UI.s1 /CLONE=UI-R-Y0-abj-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.42032.1 /TIER=ConsEnd /STK=1 /UG=Rn.42032 /UG_TITLE=ESTs AI764372 1394037_at AI230670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230670 /DB_XREF=gi:3814557 /DB_XREF=EST227365 /CLONE=REMCZ72 /FEA=EST /CNT=3 /TID=Rn.48399.1 /TIER=ConsEnd /STK=1 /UG=Rn.48399 /UG_TITLE=ESTs AI230670 Interleukin 17D Il17d 691799 XM_001079675 1394038_at BG371654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371654 /DB_XREF=gi:13268191 /DB_XREF=UI-R-BJ2-bor-d-08-0-UI.s1 /CLONE=UI-R-BJ2-bor-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.66856.1 /TIER=ConsEnd /STK=0 /UG=Rn.66856 /UG_TITLE=ESTs BG371654 intraflagellar transport 81 homolog (Chlamydomonas) Ift81 373066 NM_199120 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007283 // spermatogenesis // inferred from sequence or structural similarity /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005813 // centrosome // not recorded /// 0005929 // cilium // not recorded 1394039_at BM382886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM382886 /DB_XREF=gi:18182939 /DB_XREF=UI-R-DS0-cjd-a-23-0-UI.s1 /CLONE=UI-R-DS0-cjd-a-23-0-UI /FEA=EST /CNT=3 /TID=Rn.8954.1 /TIER=ConsEnd /STK=1 /UG=Rn.8954 /UG_TITLE=ESTs BM382886 Kruppel-like factor 5 Klf5 84410 NM_053394 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from expression pattern /// 0030033 // microvillus assembly // not recorded /// 0030033 // microvillus assembly // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1394041_at BI293870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293870 /DB_XREF=gi:14955780 /DB_XREF=UI-R-DK0-cdw-a-02-0-UI.s1 /CLONE=UI-R-DK0-cdw-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.16247.1 /TIER=ConsEnd /STK=1 /UG=Rn.16247 /UG_TITLE=ESTs BI293870 Ankhd1-Eif4ebp3 fusion transcript Ankhd1-Eif4ebp3 679725 XM_001054207 /// XM_002725328 /// XM_002725329 0003723 // RNA binding // inferred from electronic annotation 1394042_at AI011673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011673 /DB_XREF=gi:3225505 /DB_XREF=EST206124 /CLONE=ROVAY08 /FEA=EST /CNT=3 /TID=Rn.17756.1 /TIER=ConsEnd /STK=1 /UG=Rn.17756 /UG_TITLE=ESTs AI011673 hypothetical protein LOC681371 /// similar to 82-kD FMRP Interacting Protein LOC681371 /// LOC687994 681371 /// 687994 XM_001080810 /// XR_085969 1394047_at BE107848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107848 /DB_XREF=gi:8499953 /DB_XREF=UI-R-CA0-awx-e-10-0-UI.s1 /CLONE=UI-R-CA0-awx-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.51315.1 /TIER=ConsEnd /STK=1 /UG=Rn.51315 /UG_TITLE=ESTs BE107848 1394049_at BE108839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108839 /DB_XREF=gi:8500944 /DB_XREF=UI-R-BS1-ayz-a-04-0-UI.s1 /CLONE=UI-R-BS1-ayz-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.51624.1 /TIER=ConsEnd /STK=1 /UG=Rn.51624 /UG_TITLE=ESTs, Moderately similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BE108839 DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae) Dcun1d1 310324 NM_001107668 0000151 // ubiquitin ligase complex // not recorded 0005515 // protein binding // not recorded 1394051_at AI009791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009791 /DB_XREF=gi:4133111 /DB_XREF=EST204242 /CLONE=RLUBO48 /FEA=EST /CNT=2 /TID=Rn.17487.1 /TIER=ConsEnd /STK=1 /UG=Rn.17487 /UG_TITLE=ESTs AI009791 purinergic receptor P2Y, G-protein coupled, 10 P2ry10 317219 NM_001177682 /// XM_001059224 /// XM_228500 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0045028 // purinergic nucleotide receptor activity, G-protein coupled // inferred from electronic annotation 1394056_at BF551160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551160 /DB_XREF=gi:11660890 /DB_XREF=UI-R-C1-jt-f-04-0-UI.r1 /CLONE=UI-R-C1-jt-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.40900.2 /TIER=ConsEnd /STK=0 /UG=Rn.40900 /UG_TITLE=ESTs BF551160 nicolin 1 Nicn1 619581 NM_001034999 1394057_at AW522944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522944 /DB_XREF=gi:7165329 /DB_XREF=UI-R-BO0-ahp-e-06-0-UI.s1 /CLONE=UI-R-BO0-ahp-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.45519.2 /TIER=ConsEnd /STK=1 /UG=Rn.45519 /UG_TITLE=ESTs, Highly similar to NORRIE DISEASE PROTEIN HOMOLOG (M.musculus) AW522944 Norrie disease (pseudoglioma) (human) Ndp 363443 NM_001108814 0001890 // placenta development // not recorded 0005102 // receptor binding // non-traceable author statement 1394058_at AI175573 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175573 /DB_XREF=gi:3726211 /DB_XREF=EST219128 /CLONE=ROVBC16 /FEA=EST /CNT=2 /TID=Rn.28915.1 /TIER=ConsEnd /STK=1 /UG=Rn.28915 /UG_TITLE=ESTs AI175573 lectin, galactoside-binding, soluble, 12 Lgals12 293710 NM_001106333 0008629 // induction of apoptosis by intracellular signals // not recorded 0005634 // nucleus // not recorded /// 0005739 // mitochondrion // not recorded 0005529 // sugar binding // inferred from electronic annotation /// 0030395 // lactose binding // not recorded 1394059_s_at AA849923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849923 /DB_XREF=gi:4131775 /DB_XREF=EST192690 /CLONE=RMUAK61 /FEA=EST /CNT=2 /TID=Rn.81249.1 /TIER=ConsEnd /STK=1 /UG=Rn.81249 /UG_TITLE=ESTs AA849923 YME1-like 1 (S. cerevisiae) Yme1l1 114217 NM_053682 0006508 // proteolysis // inferred from electronic annotation /// 0030163 // protein catabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1394061_at AA891650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891650 /DB_XREF=gi:4132073 /DB_XREF=EST195453 /CLONE=RKIAF12 /FEA=EST /CNT=2 /TID=Rn.14703.1 /TIER=ConsEnd /STK=1 /UG=Rn.14703 /UG_TITLE=ESTs AA891650 1394065_at AI179423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179423 /DB_XREF=gi:4135159 /DB_XREF=EST223131 /CLONE=RSPCH15 /FEA=EST /CNT=2 /TID=Rn.55898.1 /TIER=ConsEnd /STK=1 /UG=Rn.55898 /UG_TITLE=ESTs AI179423 1394066_at AA875609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875609 /DB_XREF=gi:4231486 /DB_XREF=UI-R-E0-cv-c-10-0-UI.s1 /CLONE=UI-R-E0-cv-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.39628.2 /TIER=ConsEnd /STK=0 /UG=Rn.39628 /UG_TITLE=ESTs, Highly similar to 2020285A BRG1 protein (M.musculus) AA875609 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 Smarca2 361745 NM_001004446 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016514 // SWI/SNF complex // inferred from electronic annotation /// 0016514 // SWI/SNF complex // not recorded /// 0070603 // SWI/SNF-type complex // not recorded /// 0070603 // SWI/SNF-type complex // inferred from electronic annotation /// 0071564 // npBAF complex // inferred from electronic annotation /// 0071565 // nBAF complex // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation 1394068_x_at BF288243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288243 /DB_XREF=gi:11219313 /DB_XREF=EST452834 /CLONE=RGIGR44 /FEA=EST /CNT=2 /TID=Rn.18297.2 /TIER=ConsEnd /STK=0 /UG=Rn.18297 /UG_TITLE=ESTs, Moderately similar to CPBP RAT CORE PROMOTER ELEMENT-BINDING PROTEIN (R.norvegicus) BF288243 Kruppel-like factor 2 (lung) Klf2 306330 NM_001007684 0006350 // transcription // inferred from electronic annotation /// 0032715 // negative regulation of interleukin-6 production // inferred from mutant phenotype /// 0034616 // response to laminar fluid shear stress // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from mutant phenotype /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0070301 // cellular response to hydrogen peroxide // inferred from expression pattern /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071356 // cellular response to tumor necrosis factor // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1394070_at AA893087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893087 /DB_XREF=gi:3019966 /DB_XREF=EST196890 /CLONE=RKIBB93 /FEA=EST /CNT=2 /TID=Rn.13475.1 /TIER=ConsEnd /STK=1 /UG=Rn.13475 /UG_TITLE=ESTs AA893087 1394074_at AW529665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529665 /DB_XREF=gi:7172079 /DB_XREF=UI-R-BT1-akn-h-07-0-UI.s1 /CLONE=UI-R-BT1-akn-h-07-0-UI /FEA=EST /CNT=5 /TID=Rn.21021.2 /TIER=ConsEnd /STK=0 /UG=Rn.21021 /UG_TITLE=ESTs, Moderately similar to FACA_HUMAN FANCONI ANEMIA GROUP A PROTEIN (FACA PROTEIN) (H.sapiens) AW529665 zinc finger protein (C2H2 type) 276 Zfp276 307924 XM_002725424 /// XM_002728603 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1394075_at AI059004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059004 /DB_XREF=gi:3332781 /DB_XREF=UI-R-C1-lq-d-12-0-UI.s1 /CLONE=UI-R-C1-lq-d-12-0-UI /FEA=EST /CNT=5 /TID=Rn.21021.2 /TIER=ConsEnd /STK=0 /UG=Rn.21021 /UG_TITLE=ESTs, Moderately similar to FACA_HUMAN FANCONI ANEMIA GROUP A PROTEIN (FACA PROTEIN) (H.sapiens) AI059004 Fanconi anemia, complementation group A Fanca 361435 NM_001108455 0007140 // male meiosis // not recorded /// 0008584 // male gonad development // not recorded /// 0008585 // female gonad development // not recorded /// 0042127 // regulation of cell proliferation // not recorded 0005515 // protein binding // not recorded 1394077_at BF548080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548080 /DB_XREF=gi:11639187 /DB_XREF=UI-R-A0-ae-a-04-0-UI.r1 /CLONE=UI-R-A0-ae-a-04-0-UI /FEA=EST /CNT=4 /TID=Rn.19396.1 /TIER=ConsEnd /STK=0 /UG=Rn.19396 /UG_TITLE=ESTs BF548080 Rho family GTPase 3 Rnd3 295588 NM_001007641 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1394078_at AW921158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921158 /DB_XREF=gi:8086979 /DB_XREF=EST352462 /CLONE=RGIHP10 /FEA=EST /CNT=5 /TID=Rn.72473.1 /TIER=ConsEnd /STK=0 /UG=Rn.72473 /UG_TITLE=ESTs AW921158 1394079_at AA944938 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944938 /DB_XREF=gi:3104854 /DB_XREF=EST200437 /CLONE=REMAQ96 /FEA=EST /CNT=4 /TID=Rn.7808.1 /TIER=ConsEnd /STK=0 /UG=Rn.7808 /UG_TITLE=ESTs AA944938 transducin (beta)-like 1 X-linked receptor 1 Tbl1xr1 365755 NM_001108941 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005876 // spindle microtubule // not recorded /// 0017053 // transcriptional repressor complex // not recorded 0003677 // DNA binding // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008013 // beta-catenin binding // not recorded /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0042393 // histone binding // not recorded /// 0047485 // protein N-terminus binding // not recorded 1394080_at BI277860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277860 /DB_XREF=gi:14924143 /DB_XREF=UI-R-CX0-bxk-d-09-0-UI.s1 /CLONE=UI-R-CX0-bxk-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.53864.1 /TIER=ConsEnd /STK=0 /UG=Rn.53864 /UG_TITLE=ESTs BI277860 1394082_at BG662631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG662631 /DB_XREF=gi:13884553 /DB_XREF=DRAAJG08 /CLONE=DRAAJG08 /FEA=EST /CNT=3 /TID=Rn.18726.2 /TIER=ConsEnd /STK=0 /UG=Rn.18726 /UG_TITLE=ESTs, Weakly similar to C61A MOUSE C6.1A PROTEIN (M.musculus) BG662631 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 Psmd14 311078 NM_001025689 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0061136 // regulation of proteasomal protein catabolic process // not recorded 0000502 // proteasome complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0061133 // endopeptidase activator activity // not recorded /// 0070628 // proteasome binding // inferred from electronic annotation /// 0070628 // proteasome binding // not recorded 1394084_at BF289798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289798 /DB_XREF=gi:11220868 /DB_XREF=EST454389 /CLONE=RGIHL10 /FEA=EST /CNT=3 /TID=Rn.55829.1 /TIER=ConsEnd /STK=0 /UG=Rn.55829 /UG_TITLE=ESTs BF289798 1394086_at AI069981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI069981 /DB_XREF=gi:3396232 /DB_XREF=UI-R-C1-lp-b-02-0-UI.s1 /CLONE=UI-R-C1-lp-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.19609.2 /TIER=ConsEnd /STK=0 /UG=Rn.19609 /UG_TITLE=ESTs AI069981 SUMO1/sentrin specific peptidase 7 Senp7 288167 NM_001105888 0006508 // proteolysis // inferred from electronic annotation 0005622 // intracellular // not recorded /// 0005634 // nucleus // not recorded 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1394087_at BF561962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561962 /DB_XREF=gi:11671692 /DB_XREF=UI-R-E1-fx-b-11-0-UI.r1 /CLONE=UI-R-E1-fx-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.15947.3 /TIER=ConsEnd /STK=0 /UG=Rn.15947 /UG_TITLE=ESTs, Highly similar to TRAB_HUMAN TRABID protein (H.sapiens) BF561962 1394090_at BF290383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290383 /DB_XREF=gi:11221453 /DB_XREF=EST454974 /CLONE=RGIHV42 /FEA=EST /CNT=3 /TID=Rn.6418.1 /TIER=ConsEnd /STK=0 /UG=Rn.6418 /UG_TITLE=ESTs BF290383 1394093_at BF557855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557855 /DB_XREF=gi:11667633 /DB_XREF=UI-R-C0-he-d-10-0-UI.r1 /CLONE=UI-R-C0-he-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.12984.2 /TIER=ConsEnd /STK=0 /UG=Rn.12984 /UG_TITLE=ESTs BF557855 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 Smarca5 307766 NM_001107419 0000183 // chromatin silencing at rDNA // not recorded /// 0006302 // double-strand break repair // not recorded /// 0006333 // chromatin assembly or disassembly // not recorded /// 0006334 // nucleosome assembly // not recorded /// 0006338 // chromatin remodeling // not recorded /// 0006338 // chromatin remodeling // inferred from electronic annotation /// 0006352 // transcription initiation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0009790 // embryo development // not recorded /// 0016584 // nucleosome positioning // not recorded /// 0043044 // ATP-dependent chromatin remodeling // inferred from electronic annotation /// 0043044 // ATP-dependent chromatin remodeling // not recorded /// 0045941 // positive regulation of transcription // not recorded 0000793 // condensed chromosome // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005677 // chromatin silencing complex // not recorded /// 0005730 // nucleolus // not recorded /// 0016585 // chromatin remodeling complex // inferred from electronic annotation /// 0031213 // RSF complex // not recorded /// 0043596 // nuclear replication fork // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0031491 // nucleosome binding // inferred from electronic annotation /// 0042393 // histone binding // not recorded 1394094_at AI412196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412196 /DB_XREF=gi:4255700 /DB_XREF=EST240490 /CLONE=RBRDY25 /FEA=EST /CNT=2 /TID=Rn.43463.1 /TIER=ConsEnd /STK=0 /UG=Rn.43463 /UG_TITLE=ESTs AI412196 1394095_at AA850714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850714 /DB_XREF=gi:2938254 /DB_XREF=EST193482 /CLONE=ROVAJ83 /FEA=EST /CNT=2 /TID=Rn.55553.2 /TIER=ConsEnd /STK=0 /UG=Rn.55553 /UG_TITLE=ESTs AA850714 gypsy retrotransposon integrase 1 Gin1 316687 NM_001025012 0015074 // DNA integration // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation 1394096_at AI555027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555027 /DB_XREF=gi:4487390 /DB_XREF=UI-R-C2p-qv-c-05-0-UI.s1 /CLONE=UI-R-C2p-qv-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.42585.1 /TIER=ConsEnd /STK=0 /UG=Rn.42585 /UG_TITLE=ESTs AI555027 complement component (3b/4b) receptor 1-like Cr1l 54243 NM_001005265 /// NM_001005330 /// NM_019301 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006958 // complement activation, classical pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007565 // female pregnancy // inferred from electronic annotation /// 0030449 // regulation of complement activation // not recorded /// 0030449 // regulation of complement activation // inferred from electronic annotation /// 0045087 // innate immune response // inferred from electronic annotation /// 0045916 // negative regulation of complement activation // inferred from mutant phenotype /// 0045916 // negative regulation of complement activation // not recorded /// 0045916 // negative regulation of complement activation // inferred from electronic annotation 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1394097_at AA849706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849706 /DB_XREF=gi:2937246 /DB_XREF=EST192473 /CLONE=RMUAH89 /FEA=EST /CNT=2 /TID=Rn.20530.2 /TIER=ConsEnd /STK=0 /UG=Rn.20530 /UG_TITLE=ESTs AA849706 1394100_at AI012591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012591 /DB_XREF=gi:3226423 /DB_XREF=EST207042 /CLONE=RPLAZ30 /FEA=EST /CNT=2 /TID=Rn.17909.2 /TIER=ConsEnd /STK=0 /UG=Rn.17909 /UG_TITLE=ESTs, Weakly similar to THROMBIN RECEPTOR PRECURSOR (R.norvegicus) AI012591 free fatty acid receptor 2 Ffar2 292794 NM_001005877 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation 1394101_at BE109260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109260 /DB_XREF=gi:8501365 /DB_XREF=UI-R-BS1-azd-g-04-0-UI.s1 /CLONE=UI-R-BS1-azd-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.19284.1 /TIER=ConsEnd /STK=0 /UG=Rn.19284 /UG_TITLE=ESTs BE109260 1394105_at AA859633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859633 /DB_XREF=gi:4230178 /DB_XREF=UI-R-E0-bs-h-09-0-UI.s1 /CLONE=UI-R-E0-bs-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.22409.2 /TIER=ConsEnd /STK=1 /UG=Rn.22409 /UG_TITLE=ESTs AA859633 sterile alpha motif domain containing 4B Samd4b 308473 NM_001107498 0005515 // protein binding // not recorded 1394107_at BF546029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546029 /DB_XREF=gi:11637094 /DB_XREF=UI-R-C2p-rd-g-03-0-UI.r1 /CLONE=UI-R-C2p-rd-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.63882.1 /TIER=ConsEnd /STK=1 /UG=Rn.63882 /UG_TITLE=ESTs BF546029 transducin (beta)-like 1 X-linked receptor 1 Tbl1xr1 365755 NM_001108941 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005876 // spindle microtubule // not recorded /// 0017053 // transcriptional repressor complex // not recorded 0003677 // DNA binding // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008013 // beta-catenin binding // not recorded /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0042393 // histone binding // not recorded /// 0047485 // protein N-terminus binding // not recorded 1394109_at BF558056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558056 /DB_XREF=gi:11667786 /DB_XREF=UI-R-C0-hj-e-12-0-UI.r1 /CLONE=UI-R-C0-hj-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.72710.1 /TIER=ConsEnd /STK=0 /UG=Rn.72710 /UG_TITLE=ESTs BF558056 1394110_at H35830 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H35830 /DB_XREF=gi:981247 /DB_XREF=EST106626 /CLONE=RPCBE52 /FEA=EST /CNT=2 /TID=Rn.14676.1 /TIER=ConsEnd /STK=1 /UG=Rn.14676 /UG_TITLE=ESTs H35830 1394112_at AA945123 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945123 /DB_XREF=gi:4132500 /DB_XREF=EST200622 /CLONE=RLIAG78 /FEA=EST /CNT=1 /TID=Rn.7836.1 /TIER=ConsEnd /STK=1 /UG=Rn.7836 /UG_TITLE=EST AA945123 hydroxyacid oxidase (glycolate oxidase) 1 Hao1 311446 NM_001107780 0001561 // fatty acid alpha-oxidation // not recorded /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0046296 // glycolate catabolic process // not recorded /// 0046487 // glyoxylate metabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005777 // peroxisome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003973 // (S)-2-hydroxy-acid oxidase activity // inferred from electronic annotation /// 0003973 // (S)-2-hydroxy-acid oxidase activity // not recorded /// 0008891 // glycolate oxidase activity // not recorded /// 0010181 // FMN binding // inferred from electronic annotation /// 0010181 // FMN binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1394113_at BI850139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI850139 /DB_XREF=gi:16003626 /DB_XREF=imageqc_10_2000sma461bdff41.x1 /CLONE=IMAGE:4176492 /FEA=EST /CNT=1 /TID=Rn.81047.1 /TIER=ConsEnd /STK=1 /UG=Rn.81047 /UG_TITLE=EST, Moderately similar to B56021 probable cell division control protein p55CDC - rat (R.norvegicus) BI850139 cell division cycle 20 homolog (S. cerevisiae) Cdc20 64515 NM_171993 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0050773 // regulation of dendrite development // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0005654 // nucleoplasm // not recorded /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0019899 // enzyme binding // not recorded 1394114_at AA799434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799434 /DB_XREF=gi:2862389 /DB_XREF=EST188931 /CLONE=RHEAB01 /FEA=EST /CNT=1 /TID=Rn.6184.1 /TIER=ConsEnd /STK=1 /UG=Rn.6184 /UG_TITLE=EST AA799434 1394117_at AA799317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799317 /DB_XREF=gi:2862272 /DB_XREF=EST188814 /CLONE=RHEAA28 /FEA=EST /CNT=1 /TID=Rn.6177.2 /TIER=ConsEnd /STK=0 /UG=Rn.6177 /UG_TITLE=ESTs, Moderately similar to DDB2_HUMAN DNA DAMAGE BINDING PROTEIN 2 (DAMAGE-SPECIFIC DNA BINDING PROTEIN 2) (DDB P48 SUBUNIT) (DDBB) (UV-DAMAGED DNA-BINDING PROTEIN 2) (UV-DDB 2) (H.sapiens) AA799317 1394118_at AA894340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894340 /DB_XREF=gi:3021219 /DB_XREF=EST198143 /CLONE=RSPAZ08 /FEA=EST /CNT=1 /TID=Rn.7359.2 /TIER=ConsEnd /STK=0 /UG=Rn.7359 /UG_TITLE=ESTs AA894340 Arginine-tRNA-protein transferase 1 Ate1 293526 NM_001106300 0016598 // protein arginylation // inferred from electronic annotation /// 0016598 // protein arginylation // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0004057 // arginyltransferase activity // inferred from electronic annotation /// 0004057 // arginyltransferase activity // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1394119_at AA891233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891233 /DB_XREF=gi:3018112 /DB_XREF=EST195036 /CLONE=RHEAQ84 /FEA=EST /CNT=1 /TID=Rn.7266.1 /TIER=ConsEnd /STK=1 /UG=Rn.7266 /UG_TITLE=EST AA891233 1394120_a_at AI176775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176775 /DB_XREF=gi:3727413 /DB_XREF=EST220370 /CLONE=ROVBW64 /FEA=EST /CNT=1 /TID=Rn.227.2 /TIER=ConsEnd /STK=1 /UG=Rn.227 /UG_TITLE=ESTs AI176775 1394121_at AI639332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639332 /DB_XREF=gi:4700366 /DB_XREF=rx00576s /CLONE=rx00576 /FEA=EST /CNT=1 /TID=Rn.43697.1 /TIER=ConsEnd /STK=1 /UG=Rn.43697 /UG_TITLE=EST AI639332 1394122_at AI012081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012081 /DB_XREF=gi:3225913 /DB_XREF=EST206532 /CLONE=RPLAS46 /FEA=EST /CNT=1 /TID=Rn.20618.2 /TIER=ConsEnd /STK=1 /UG=Rn.20618 /UG_TITLE=ESTs, Weakly similar to TRANSFORMING PROTEIN RHOB (R.norvegicus) AI012081 ras homolog gene family, member H Rhoh 305341 NM_001013430 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0030217 // T cell differentiation // inferred from electronic annotation /// 0030217 // T cell differentiation // not recorded /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0045576 // mast cell activation // inferred from electronic annotation /// 0045576 // mast cell activation // not recorded 0001772 // immunological synapse // inferred from electronic annotation /// 0001772 // immunological synapse // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0019210 // kinase inhibitor activity // inferred from electronic annotation /// 0019210 // kinase inhibitor activity // not recorded 1394124_at AA891753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891753 /DB_XREF=gi:3018632 /DB_XREF=EST195556 /CLONE=RKIAG37 /FEA=EST /CNT=1 /TID=Rn.30.2 /TIER=ConsEnd /STK=1 /UG=Rn.30 /UG_TITLE=ESTs AA891753 Similar to chromosome 7 open reading frame 11 LOC684996 684996 NM_001109452 1394125_at AI639140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639140 /DB_XREF=gi:4700174 /DB_XREF=rx05063s /CLONE=rx05063 /FEA=EST /CNT=1 /TID=Rn.43057.1 /TIER=ConsEnd /STK=1 /UG=Rn.43057 /UG_TITLE=EST AI639140 keratin associated protein 5-5 /// hypothetical protein LOC685392 /// hypothetical protein LOC685544 /// RGD1565859 Krtap5-5 /// LOC685392 /// LOC685544 /// RGD1565859 499291 /// 685392 /// 685436 /// 685544 NM_001109474 /// XM_001063482 /// XM_001063606 /// XM_001063784 /// XM_002725731 /// XM_002725756 /// XM_579941 0005882 // intermediate filament // inferred from electronic annotation /// 0045095 // keratin filament // inferred from electronic annotation 1394126_at AA893693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893693 /DB_XREF=gi:4132321 /DB_XREF=EST197496 /CLONE=RPLAI51 /FEA=EST /CNT=1 /TID=Rn.14823.1 /TIER=ConsEnd /STK=1 /UG=Rn.14823 /UG_TITLE=EST AA893693 1394127_at AA943800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943800 /DB_XREF=gi:3103716 /DB_XREF=EST199299 /CLONE=RBRAP82 /FEA=EST /CNT=1 /TID=Rn.22980.2 /TIER=ConsEnd /STK=0 /UG=Rn.22980 /UG_TITLE=ESTs AA943800 1394128_at AI639276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639276 /DB_XREF=gi:4700310 /DB_XREF=rx00678s /CLONE=rx00678 /FEA=EST /CNT=1 /TID=Rn.43696.1 /TIER=ConsEnd /STK=1 /UG=Rn.43696 /UG_TITLE=EST AI639276 1394129_at AA850692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850692 /DB_XREF=gi:2938232 /DB_XREF=EST193460 /CLONE=ROVAJ58 /FEA=EST /CNT=1 /TID=Rn.7033.1 /TIER=ConsEnd /STK=1 /UG=Rn.7033 /UG_TITLE=EST AA850692 1394130_at AA946190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946190 /DB_XREF=gi:3106106 /DB_XREF=EST201689 /CLONE=RLUBC20 /FEA=EST /CNT=1 /TID=Rn.8005.1 /TIER=ConsEnd /STK=1 /UG=Rn.8005 /UG_TITLE=EST AA946190 Tripartite motif-containing 44 Trim44 362172 NM_001013203 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1394132_at H33723 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33723 /DB_XREF=gi:979140 /DB_XREF=EST109989 /CLONE=RPNAX95 /FEA=EST /CNT=1 /TID=Rn.14661.1 /TIER=ConsEnd /STK=1 /UG=Rn.14661 /UG_TITLE=EST H33723 1394134_at AA893933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893933 /DB_XREF=gi:3020812 /DB_XREF=EST197736 /CLONE=RPLAN64 /FEA=EST /CNT=1 /TID=Rn.14838.1 /TIER=ConsEnd /STK=1 /UG=Rn.14838 /UG_TITLE=EST AA893933 dedicator of cytokinesis 8 Dock8 499337 NM_001037793 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0051020 // GTPase binding // inferred from electronic annotation 1394135_at AI639109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639109 /DB_XREF=gi:4700143 /DB_XREF=rx04104s /CLONE=rx04104 /FEA=EST /CNT=1 /TID=Rn.43903.1 /TIER=ConsEnd /STK=1 /UG=Rn.43903 /UG_TITLE=EST AI639109 1394136_at AI176017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176017 /DB_XREF=gi:3726655 /DB_XREF=EST219593 /CLONE=ROVBJ49 /FEA=EST /CNT=1 /TID=Rn.28954.1 /TIER=ConsEnd /STK=1 /UG=Rn.28954 /UG_TITLE=EST AI176017 mitochondrial poly(A) polymerase Mtpap 307050 NM_001107359 0071044 // histone mRNA catabolic process // not recorded 0005739 // mitochondrion // not recorded 1394140_at AI639284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639284 /DB_XREF=gi:4700318 /DB_XREF=rx01678s /CLONE=rx01678 /FEA=EST /CNT=1 /TID=Rn.43914.1 /TIER=ConsEnd /STK=1 /UG=Rn.43914 /UG_TITLE=EST, Highly similar to A61404 keratin A, type I - mouse (M.musculus) AI639284 keratin 31 Krt31 450228 NM_001008817 0005882 // intermediate filament // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394141_at AI638976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI638976 /DB_XREF=gi:4700010 /DB_XREF=rx02508s /CLONE=rx02508 /FEA=EST /CNT=1 /TID=Rn.43896.1 /TIER=ConsEnd /STK=1 /UG=Rn.43896 /UG_TITLE=EST AI638976 1394144_at BG153275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG153275 /DB_XREF=gi:12665305 /DB_XREF=nag11d02.x1 /CLONE=IMAGE:4176026 /FEA=EST /CNT=1 /TID=Rn.65607.1 /TIER=ConsEnd /STK=1 /UG=Rn.65607 /UG_TITLE=EST, Weakly similar to TBB1 RAT TUBULIN BETA CHAIN (R.norvegicus) BG153275 tubulin, beta 6 Tubb6 307351 NM_001025675 0007017 // microtubule-based process // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1394146_at BG057548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG057548 /DB_XREF=gi:12523148 /DB_XREF=nag14d03.x1 /CLONE=IMAGE:4176053 /FEA=EST /CNT=1 /TID=Rn.65592.1 /TIER=ConsEnd /STK=1 /UG=Rn.65592 /UG_TITLE=EST BG057548 1394150_at AI101632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101632 /DB_XREF=gi:3706507 /DB_XREF=EST210921 /CLONE=RBRBT15 /FEA=EST /CNT=1 /TID=Rn.24985.2 /TIER=ConsEnd /STK=1 /UG=Rn.24985 /UG_TITLE=ESTs AI101632 ubiquitin specific peptidase 49 Usp49 316211 NM_001136470 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1394153_at AA858641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858641 /DB_XREF=gi:4229972 /DB_XREF=UI-R-E0-bq-d-09-0-UI.s1 /CLONE=UI-R-E0-bq-d-09-0-UI /FEA=EST /CNT=1 /TID=Rn.16559.2 /TIER=ConsEnd /STK=1 /UG=Rn.16559 /UG_TITLE=ESTs AA858641 1394154_at AI008375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008375 /DB_XREF=gi:3222207 /DB_XREF=EST202826 /CLONE=REMAW50 /FEA=EST /CNT=1 /TID=Rn.21514.3 /TIER=ConsEnd /STK=0 /UG=Rn.21514 /UG_TITLE=ESTs AI008375 STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae) Stt3a 500972 NM_001134749 0006486 // protein glycosylation // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0008250 // oligosaccharyltransferase complex // inferred from electronic annotation /// 0008250 // oligosaccharyltransferase complex // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004576 // oligosaccharyl transferase activity // inferred from electronic annotation 1394155_at AI010943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010943 /DB_XREF=gi:3224775 /DB_XREF=EST205394 /CLONE=RMUAU57 /FEA=EST /CNT=1 /TID=Rn.22366.2 /TIER=ConsEnd /STK=0 /UG=Rn.22366 /UG_TITLE=ESTs, Weakly similar to S72435 RNA-binding protein TIA-1 - mouse (M.musculus) AI010943 RNA binding motif protein 7 Rbm7 315634 NM_001108143 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394156_at AI043758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043758 /DB_XREF=gi:3290493 /DB_XREF=UI-R-C0-jm-b-11-0-UI.s1 /CLONE=UI-R-C0-jm-b-11-0-UI /FEA=EST /CNT=1 /TID=Rn.23173.3 /TIER=ConsEnd /STK=1 /UG=Rn.23173 /UG_TITLE=ESTs AI043758 Similar to immunoglobulin superfamily, member 3 LOC683623 683623 XR_008374 1394157_at AI045190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045190 /DB_XREF=gi:3292009 /DB_XREF=UI-R-C1-ju-b-07-0-UI.s1 /CLONE=UI-R-C1-ju-b-07-0-UI /FEA=EST /CNT=1 /TID=Rn.24442.2 /TIER=ConsEnd /STK=0 /UG=Rn.24442 /UG_TITLE=ESTs, Moderately similar to T00054 hypothetical protein KIAA0415 (H.sapiens) AI045190 1394160_at AI101945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101945 /DB_XREF=gi:3706786 /DB_XREF=EST211234 /CLONE=RBRBX18 /FEA=EST /CNT=1 /TID=Rn.28119.1 /TIER=ConsEnd /STK=1 /UG=Rn.28119 /UG_TITLE=EST AI101945 transmembrane protein 2 Tmem2 309400 NM_001107596 0016021 // integral to membrane // inferred from electronic annotation 1394163_at AA964809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964809 /DB_XREF=gi:4279683 /DB_XREF=UI-R-C0-gx-a-04-0-UI.s1 /CLONE=UI-R-C0-gx-a-04-0-UI /FEA=EST /CNT=1 /TID=Rn.36146.2 /TIER=ConsEnd /STK=1 /UG=Rn.36146 /UG_TITLE=ESTs AA964809 1394164_at AI639175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639175 /DB_XREF=gi:4700209 /DB_XREF=rx02001s /CLONE=rx02001 /FEA=EST /CNT=1 /TID=Rn.43061.1 /TIER=ConsEnd /STK=1 /UG=Rn.43061 /UG_TITLE=EST AI639175 1394166_at AI638966 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI638966 /DB_XREF=gi:4700000 /DB_XREF=rx04729s /CLONE=rx04729 /FEA=EST /CNT=1 /TID=Rn.43189.1 /TIER=ConsEnd /STK=1 /UG=Rn.43189 /UG_TITLE=EST AI638966 1394167_at AI639302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639302 /DB_XREF=gi:4700336 /DB_XREF=rx00257s /CLONE=rx00257 /FEA=EST /CNT=1 /TID=Rn.43201.1 /TIER=ConsEnd /STK=1 /UG=Rn.43201 /UG_TITLE=EST AI639302 1394169_at AI639265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639265 /DB_XREF=gi:4700299 /DB_XREF=rx04959s /CLONE=rx04959 /FEA=EST /CNT=1 /TID=Rn.43317.1 /TIER=ConsEnd /STK=1 /UG=Rn.43317 /UG_TITLE=EST AI639265 G protein-coupled receptor 150 Gpr150 499486 NM_001109173 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1394171_at AI639310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639310 /DB_XREF=gi:4700344 /DB_XREF=rx01937s /CLONE=rx01937 /FEA=EST /CNT=1 /TID=Rn.43512.1 /TIER=ConsEnd /STK=1 /UG=Rn.43512 /UG_TITLE=EST AI639310 1394174_at AI639089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639089 /DB_XREF=gi:4700123 /DB_XREF=rx00304s /CLONE=rx00304 /FEA=EST /CNT=1 /TID=Rn.44143.1 /TIER=ConsEnd /STK=1 /UG=Rn.44143 /UG_TITLE=EST, Weakly similar to NEUTROPHIL ANTIBIOTIC PEPTIDE NP-1 PRECURSOR (R.norvegicus) AI639089 defensin alpha-related sequence 1 Defa-rs1 613220 NM_001033073 0006952 // defense response // inferred from electronic annotation 0005615 // extracellular space // inferred from electronic annotation 1394175_at AI639194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639194 /DB_XREF=gi:4700228 /DB_XREF=rx04801s /CLONE=rx04801 /FEA=EST /CNT=1 /TID=Rn.44150.1 /TIER=ConsEnd /STK=1 /UG=Rn.44150 /UG_TITLE=EST AI639194 1394179_s_at AI101915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101915 /DB_XREF=gi:3706761 /DB_XREF=EST211204 /CLONE=RBRBW78 /FEA=EST /CNT=1 /TID=Rn.65520.2 /TIER=ConsEnd /STK=1 /UG=Rn.65520 /UG_TITLE=ESTs, Weakly similar to C21O_HUMAN PROTEIN C21ORF2 (H.sapiens) AI101915 1394180_at AI639379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639379 /DB_XREF=gi:4700413 /DB_XREF=rx01695s /CLONE=rx01695 /FEA=EST /CNT=1 /TID=Rn.80809.1 /TIER=ConsEnd /STK=1 /UG=Rn.80809 /UG_TITLE=EST AI639379 1394181_at AI176506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176506 /DB_XREF=gi:3727144 /DB_XREF=EST220092 /CLONE=ROVBS77 /FEA=EST /CNT=1 /TID=Rn.9406.2 /TIER=ConsEnd /STK=0 /UG=Rn.9406 /UG_TITLE=ESTs, Weakly similar to MGD1_RAT Melanoma-associated antigen D1 (MAGE-D1 antigen) (Neurotrophin receptor-interacting MAGE homolog) (Sertoli cell necdin related gene-1) (SNERG-1) (R.norvegicus) AI176506 Necdin-like 2 Ndnl2 309259 NM_001173527 /// XM_219708 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394182_at AI178892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178892 /DB_XREF=gi:3729530 /DB_XREF=EST222574 /CLONE=RSPBQ74 /FEA=EST /CNT=1 /TID=Rn.47929.2 /TIER=ConsEnd /STK=1 /UG=Rn.47929 /UG_TITLE=ESTs AI178892 myotubularin related protein 4 Mtmr4 287607 NM_001105827 0016311 // dephosphorylation // inferred from electronic annotation 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1394184_at AI177746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177746 /DB_XREF=gi:3728384 /DB_XREF=EST221388 /CLONE=RPLCF58 /FEA=EST /CNT=1 /TID=Rn.29143.1 /TIER=ConsEnd /STK=1 /UG=Rn.29143 /UG_TITLE=EST AI177746 1394186_at BG153276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG153276 /DB_XREF=gi:12665306 /DB_XREF=nag11d04.x1 /CLONE=IMAGE:4176030 /FEA=EST /CNT=1 /TID=Rn.65608.1 /TIER=ConsEnd /STK=1 /UG=Rn.65608 /UG_TITLE=EST BG153276 1394187_at AI639267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639267 /DB_XREF=gi:4700301 /DB_XREF=rx02938s /CLONE=rx02938 /FEA=EST /CNT=1 /TID=Rn.41322.3 /TIER=ConsEnd /STK=1 /UG=Rn.41322 /UG_TITLE=ESTs, Highly similar to TROPONIN C, SKELETAL MUSCLE (M.musculus) AI639267 similar to leiomodin 3 (fetal) LOC687145 687145 XM_001077246 0005856 // cytoskeleton // inferred from electronic annotation 0005523 // tropomyosin binding // inferred from electronic annotation 1394192_at AI406924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406924 /DB_XREF=gi:4250428 /DB_XREF=EST235212 /CLONE=ROVDU83 /FEA=EST /CNT=1 /TID=Rn.54150.1 /TIER=ConsEnd /STK=1 /UG=Rn.54150 /UG_TITLE=EST AI406924 1394194_x_at AI639126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639126 /DB_XREF=gi:4700160 /DB_XREF=rx03923s /CLONE=rx03923 /FEA=EST /CNT=1 /TID=Rn.43056.1 /TIER=ConsEnd /STK=0 /UG=Rn.43056 /UG_TITLE=EST AI639126 1394195_at AI638983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI638983 /DB_XREF=gi:4700017 /DB_XREF=rx00348s /CLONE=rx00348 /FEA=EST /CNT=1 /TID=Rn.43897.1 /TIER=ConsEnd /STK=1 /UG=Rn.43897 /UG_TITLE=EST AI638983 1394196_at AA956971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956971 /DB_XREF=gi:4239445 /DB_XREF=UI-R-E1-fl-h-11-0-UI.s1 /CLONE=UI-R-E1-fl-h-11-0-UI /FEA=EST /CNT=1 /TID=Rn.80983.1 /TIER=ConsEnd /STK=1 /UG=Rn.80983 /UG_TITLE=EST AA956971 1394198_at AI639063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639063 /DB_XREF=gi:4700097 /DB_XREF=rx03085s /CLONE=rx03085 /FEA=EST /CNT=1 /TID=Rn.43050.1 /TIER=ConsEnd /STK=1 /UG=Rn.43050 /UG_TITLE=EST AI639063 1394200_at BF410146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410146 /DB_XREF=gi:11398121 /DB_XREF=UI-R-CA1-bju-a-07-0-UI.s1 /CLONE=UI-R-CA1-bju-a-07-0-UI /FEA=EST /CNT=1 /TID=Rn.61594.1 /TIER=ConsEnd /STK=1 /UG=Rn.61594 /UG_TITLE=EST BF410146 heat shock protein alpha 2 Hspa2 60460 NM_021863 0006950 // response to stress // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1394202_x_at AI176117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176117 /DB_XREF=gi:3726755 /DB_XREF=EST219696 /CLONE=ROVBK86 /FEA=EST /CNT=1 /TID=Rn.16308.3 /TIER=ConsEnd /STK=1 /UG=Rn.16308 /UG_TITLE=ESTs AI176117 1394205_at AA955942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955942 /DB_XREF=gi:4238337 /DB_XREF=UI-R-E1-ff-b-03-0-UI.s1 /CLONE=UI-R-E1-ff-b-03-0-UI /FEA=EST /CNT=1 /TID=Rn.20789.2 /TIER=ConsEnd /STK=1 /UG=Rn.20789 /UG_TITLE=ESTs AA955942 1394206_s_at AI639084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639084 /DB_XREF=gi:4700118 /DB_XREF=rx02784s /CLONE=rx02784 /FEA=EST /CNT=1 /TID=Rn.43051.1 /TIER=ConsEnd /STK=1 /UG=Rn.43051 /UG_TITLE=EST AI639084 1394207_at AI236188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236188 /DB_XREF=gi:3829694 /DB_XREF=EST232750 /CLONE=ROVDC48 /FEA=EST /CNT=1 /TID=Rn.25487.1 /TIER=ConsEnd /STK=1 /UG=Rn.25487 /UG_TITLE=EST AI236188 1394209_at AI236275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236275 /DB_XREF=gi:4136180 /DB_XREF=EST232837 /CLONE=ROVDD55 /FEA=EST /CNT=1 /TID=Rn.25499.1 /TIER=ConsEnd /STK=1 /UG=Rn.25499 /UG_TITLE=EST AI236275 1394212_at AI234962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234962 /DB_XREF=gi:3828468 /DB_XREF=EST231524 /CLONE=ROVCK73 /FEA=EST /CNT=1 /TID=Rn.18037.2 /TIER=ConsEnd /STK=1 /UG=Rn.18037 /UG_TITLE=ESTs, Weakly similar to Human mRNA KIAA0066 predicted protein like (Caenorhabditis elegans) (C.elegans) AI234962 similar to RAB3 GTPase-activating protein RGD1306487 304759 XR_005436 /// XR_009610 0005737 // cytoplasm // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1394213_at AI030380 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030380 /DB_XREF=gi:3248206 /DB_XREF=UI-R-C0-jh-g-06-0-UI.s1 /CLONE=UI-R-C0-jh-g-06-0-UI /FEA=EST /CNT=1 /TID=Rn.13279.3 /TIER=ConsEnd /STK=0 /UG=Rn.13279 /UG_TITLE=ESTs AI030380 similar to RIKEN cDNA 1200014J11 RGD1308139 360563 NM_001108281 0000166 // nucleotide binding // inferred from electronic annotation 1394214_at AA946071 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946071 /DB_XREF=gi:4132682 /DB_XREF=EST201570 /CLONE=RLUBA90 /FEA=EST /CNT=1 /TID=Rn.25532.2 /TIER=ConsEnd /STK=1 /UG=Rn.25532 /UG_TITLE=ESTs AA946071 1394216_at AI232395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232395 /DB_XREF=gi:3816275 /DB_XREF=EST229083 /CLONE=RKICB19 /FEA=EST /CNT=1 /TID=Rn.29596.1 /TIER=ConsEnd /STK=1 /UG=Rn.29596 /UG_TITLE=EST AI232395 similar to RIKEN cDNA 2810055F11 RGD1305721 314214 NM_001108031 0018112 // proline racemase activity // inferred from electronic annotation 1394218_s_at AI175842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175842 /DB_XREF=gi:4134828 /DB_XREF=EST219413 /CLONE=ROVBG19 /FEA=EST /CNT=1 /TID=Rn.28939.1 /TIER=ConsEnd /STK=1 /UG=Rn.28939 /UG_TITLE=EST AI175842 zinc finger protein, multitype 2 Zfpm2 314930 NM_001130501 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001570 // vasculogenesis // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0007507 // heart development // not recorded /// 0030324 // lung development // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048568 // embryonic organ development // not recorded /// 0048738 // cardiac muscle tissue development // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded 1394220_at H31648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31648 /DB_XREF=gi:977065 /DB_XREF=EST105914 /CLONE=RPCAV29 /FEA=EST /CNT=1 /TID=Rn.14579.1 /TIER=ConsEnd /STK=1 /UG=Rn.14579 /UG_TITLE=EST H31648 1394222_at AI556398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556398 /DB_XREF=gi:4488761 /DB_XREF=UI-R-C2p-rh-b-05-0-UI.s1 /CLONE=UI-R-C2p-rh-b-05-0-UI /FEA=EST /CNT=1 /TID=Rn.40916.2 /TIER=ConsEnd /STK=1 /UG=Rn.40916 /UG_TITLE=ESTs, Weakly similar to HXA3 MOUSE HOMEOBOX PROTEIN HOX-A3 (M.musculus) AI556398 zinc finger protein 553 /// zinc finger protein 771 Znf553 /// Znf771 308991 /// 308992 XM_001080163 /// XM_219345 /// XM_219346 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1394225_at AI639396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639396 /DB_XREF=gi:4700430 /DB_XREF=rx03014s /CLONE=rx03014 /FEA=EST /CNT=1 /TID=Rn.43918.1 /TIER=ConsEnd /STK=1 /UG=Rn.43918 /UG_TITLE=EST, Moderately similar to 40S RIBOSOMAL PROTEIN S25 (R.norvegicus) AI639396 1394227_at AI237251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237251 /DB_XREF=gi:3830757 /DB_XREF=EST233813 /CLONE=RPLCV58 /FEA=EST /CNT=1 /TID=Rn.20162.2 /TIER=ConsEnd /STK=1 /UG=Rn.20162 /UG_TITLE=ESTs AI237251 1394228_at AA893147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893147 /DB_XREF=gi:3020026 /DB_XREF=EST196950 /CLONE=RKIBC70 /FEA=EST /CNT=1 /TID=Rn.13478.1 /TIER=ConsEnd /STK=1 /UG=Rn.13478 /UG_TITLE=EST AA893147 transmembrane and immunoglobulin domain containing 1 Tmigd1 363654 NM_001135029 1394230_at H33516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33516 /DB_XREF=gi:978933 /DB_XREF=EST109611 /CLONE=RPNAT29 /FEA=EST /CNT=1 /TID=Rn.14644.1 /TIER=ConsEnd /STK=1 /UG=Rn.14644 /UG_TITLE=EST H33516 1394234_x_at AA848540 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848540 /DB_XREF=gi:2936080 /DB_XREF=EST191300 /CLONE=RKIAC92 /FEA=EST /CNT=1 /TID=Rn.3917.3 /TIER=ConsEnd /STK=1 /UG=Rn.3917 /UG_TITLE=ESTs AA848540 DDB1 and CUL4 associated factor 6 Dcaf6 289181 XM_001071288 /// XM_002724885 /// XM_002728021 /// XM_213926 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0080008 // CUL4 RING ubiquitin ligase complex // not recorded 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded 1394235_at AA800639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800639 /DB_XREF=gi:2863594 /DB_XREF=EST190136 /CLONE=RLUAB85 /FEA=EST /CNT=1 /TID=Rn.6615.1 /TIER=ConsEnd /STK=1 /UG=Rn.6615 /UG_TITLE=EST AA800639 1394238_x_at AA893749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893749 /DB_XREF=gi:3020628 /DB_XREF=EST197552 /CLONE=RPLAK20 /FEA=EST /CNT=1 /TID=Rn.14829.1 /TIER=ConsEnd /STK=1 /UG=Rn.14829 /UG_TITLE=EST, Weakly similar to PDIP_HUMAN PROTEIN DISULFIDE ISOMERASE PDIP PRECURSOR (H.sapiens) AA893749 1394240_at AI014154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI014154 /DB_XREF=gi:3227090 /DB_XREF=EST207709 /CLONE=RSPBF71 /FEA=EST /CNT=1 /TID=Rn.16772.3 /TIER=ConsEnd /STK=0 /UG=Rn.16772 /UG_TITLE=ESTs AI014154 Similar to RIKEN cDNA 1810030N24 RGD1305158 297971 NM_001106644 1394241_at BF401902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401902 /DB_XREF=gi:11389877 /DB_XREF=UI-R-CA0-bhu-c-11-0-UI.s1 /CLONE=UI-R-CA0-bhu-c-11-0-UI /FEA=EST /CNT=1 /TID=Rn.59906.1 /TIER=ConsEnd /STK=1 /UG=Rn.59906 /UG_TITLE=ESTs, Moderately similar to S22695 restin (H.sapiens) BF401902 CAP-GLY domain containing linker protein 1 Clip1 65201 NM_031745 0005881 // cytoplasmic microtubule // inferred from direct assay /// 0005881 // cytoplasmic microtubule // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // not recorded /// 0008017 // microtubule binding // traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // traceable author statement /// 0051010 // microtubule plus-end binding // inferred from direct assay /// 0051010 // microtubule plus-end binding // not recorded 1394243_at AI101062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101062 /DB_XREF=gi:3706050 /DB_XREF=EST210351 /CLONE=RBRBE81 /FEA=EST /CNT=1 /TID=Rn.33717.1 /TIER=ConsEnd /STK=1 /UG=Rn.33717 /UG_TITLE=ESTs, Highly similar to spermine synthase (Mus musculus) (M.musculus) AI101062 similar to spermine synthase /// spermine synthase LOC683008 /// Sms 363469 /// 683008 NM_001033899 /// XM_001062228 /// XM_002729229 0006597 // spermine biosynthetic process // inferred from electronic annotation /// 0008215 // spermine metabolic process // not recorded 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016768 // spermine synthase activity // inferred from electronic annotation /// 0016768 // spermine synthase activity // not recorded 1394244_at AI010025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010025 /DB_XREF=gi:3223857 /DB_XREF=EST204476 /CLONE=RLUBS68 /FEA=EST /CNT=1 /TID=Rn.17515.1 /TIER=ConsEnd /STK=1 /UG=Rn.17515 /UG_TITLE=EST AI010025 1394245_at H31734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31734 /DB_XREF=gi:977151 /DB_XREF=EST106083 /FEA=EST /CNT=1 /TID=Rn.14859.1 /TIER=ConsEnd /STK=1 /UG=Rn.14859 /UG_TITLE=EST H31734 1394247_x_at AA799816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799816 /DB_XREF=gi:2862771 /DB_XREF=EST189313 /CLONE=RHEAF71 /FEA=EST /CNT=1 /TID=Rn.41033.2 /TIER=ConsEnd /STK=1 /UG=Rn.41033 /UG_TITLE=ESTs, Highly similar to T46306 hypothetical protein DKFZp434D2411.1 (H.sapiens) AA799816 1394249_x_at BG153340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG153340 /DB_XREF=gi:12665370 /DB_XREF=nag12h04.x1 /CLONE=IMAGE:4176223 /FEA=EST /CNT=1 /TID=Rn.65631.1 /TIER=ConsEnd /STK=1 /UG=Rn.65631 /UG_TITLE=EST BG153340 1394251_x_at AI713965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI713965 /DB_XREF=gi:5017765 /DB_XREF=UI-R-AB1-yt-h-03-0-UI.s1 /CLONE=UI-R-AB1-yt-h-03-0-UI /FEA=EST /CNT=1 /TID=Rn.22133.2 /TIER=ConsEnd /STK=0 /UG=Rn.22133 /UG_TITLE=ESTs, Highly similar to IRX3 MOUSE IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX-3 (M.musculus) AI713965 iroquois homeobox 3 Irx3 307721 NM_001107413 0001656 // metanephros development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007498 // mesoderm development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0072047 // proximal/distal pattern formation involved in nephron development // not recorded /// 0072086 // specification of loop of Henle identity // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1394252_at BG668764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668764 /DB_XREF=gi:13890686 /DB_XREF=DRNCGG12 /CLONE=DRNCGG12 /FEA=EST /CNT=3 /TID=Rn.76519.1 /TIER=ConsEnd /STK=0 /UG=Rn.76519 /UG_TITLE=ESTs BG668764 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 Spock3 306404 NM_001107310 0007165 // signal transduction // inferred from electronic annotation /// 0019800 // peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan // not recorded 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005539 // glycosaminoglycan binding // not recorded 1394253_at BF549913 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549913 /DB_XREF=gi:11659643 /DB_XREF=UI-R-E0-bv-a-02-0-UI.r1 /CLONE=UI-R-E0-bv-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.37534.1 /TIER=ConsEnd /STK=0 /UG=Rn.37534 /UG_TITLE=ESTs, Moderately similar to EF2K RAT ELONGATION FACTOR 2 KINASE (R.norvegicus) BF549913 Eukaryotic elongation factor-2 kinase Eef2k 25435 NM_012947 0006468 // protein phosphorylation // inferred from electronic annotation 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004686 // elongation factor-2 kinase activity // inferred from mutant phenotype /// 0004686 // elongation factor-2 kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1394256_at BG664811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664811 /DB_XREF=gi:13886733 /DB_XREF=DRABLE10 /CLONE=DRABLE10 /FEA=EST /CNT=1 /TID=Rn.76526.1 /TIER=ConsEnd /STK=0 /UG=Rn.76526 /UG_TITLE=EST BG664811 1394257_at AW919209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919209 /DB_XREF=gi:8085000 /DB_XREF=EST350513 /CLONE=RGIFK32 /FEA=EST /CNT=1 /TID=Rn.33887.2 /TIER=ConsEnd /STK=0 /UG=Rn.33887 /UG_TITLE=ESTs AW919209 tripartite motif-containing 16 Trim16 303214 NM_001135033 0032526 // response to retinoic acid // not recorded /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043966 // histone H3 acetylation // not recorded /// 0043967 // histone H4 acetylation // not recorded /// 0045618 // positive regulation of keratinocyte differentiation // not recorded /// 0046683 // response to organophosphorus // not recorded /// 0048386 // positive regulation of retinoic acid receptor signaling pathway // not recorded /// 0050718 // positive regulation of interleukin-1 beta secretion // not recorded /// 0060416 // response to growth hormone stimulus // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016605 // PML body // not recorded 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0019966 // interleukin-1 binding // not recorded /// 0032089 // NACHT domain binding // not recorded 1394258_at BF564756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564756 /DB_XREF=gi:11674486 /DB_XREF=UI-R-BU0-amy-c-02-0-UI.r1 /CLONE=UI-R-BU0-amy-c-02-0-UI /FEA=EST /CNT=1 /TID=Rn.49196.2 /TIER=ConsEnd /STK=0 /UG=Rn.49196 /UG_TITLE=ESTs BF564756 1394259_at AW920342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920342 /DB_XREF=gi:8086151 /DB_XREF=EST351646 /CLONE=RGIGU31 /FEA=EST /CNT=1 /TID=Rn.44926.1 /TIER=ConsEnd /STK=0 /UG=Rn.44926 /UG_TITLE=ESTs AW920342 claudin 15 Cldn15 304388 NM_001107135 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 1394262_at BF555497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555497 /DB_XREF=gi:11665227 /DB_XREF=UI-R-A1-do-f-07-0-UI.r1 /CLONE=UI-R-A1-do-f-07-0-UI /FEA=EST /CNT=1 /TID=Rn.6385.2 /TIER=ConsEnd /STK=0 /UG=Rn.6385 /UG_TITLE=ESTs BF555497 zinc finger, FYVE domain containing 20 Zfyve20 312562 NM_001107875 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1394264_at BF558607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558607 /DB_XREF=gi:11668337 /DB_XREF=UI-R-A1-do-b-09-0-UI.r1 /CLONE=UI-R-A1-do-b-09-0-UI /FEA=EST /CNT=1 /TID=Rn.15184.2 /TIER=ConsEnd /STK=0 /UG=Rn.15184 /UG_TITLE=ESTs BF558607 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5 Chst5 307859 NM_001107431 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006044 // N-acetylglucosamine metabolic process // not recorded /// 0006790 // sulfur compound metabolic process // not recorded /// 0018146 // keratan sulfate biosynthetic process // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0001517 // N-acetylglucosamine 6-O-sulfotransferase activity // not recorded /// 0008146 // sulfotransferase activity // inferred from electronic annotation 1394268_at BF564783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564783 /DB_XREF=gi:11674513 /DB_XREF=UI-R-BS0-amj-d-10-0-UI.r1 /CLONE=UI-R-BS0-amj-d-10-0-UI /FEA=EST /CNT=1 /TID=Rn.47840.2 /TIER=ConsEnd /STK=0 /UG=Rn.47840 /UG_TITLE=ESTs BF564783 Son DNA binding protein Son 304092 NM_001170327 /// NM_001170328 0006916 // anti-apoptosis // not recorded 0005622 // intracellular // inferred from electronic annotation 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0050733 // RS domain binding // not recorded 1394270_at AW920330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920330 /DB_XREF=gi:8086139 /DB_XREF=EST351634 /CLONE=RGIGU15 /FEA=EST /CNT=1 /TID=Rn.17695.2 /TIER=ConsEnd /STK=0 /UG=Rn.17695 /UG_TITLE=ESTs AW920330 Meckel syndrome, type 1 Mks1 287612 NM_001034917 0042384 // cilium assembly // inferred from electronic annotation /// 0042384 // cilium assembly // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0005932 // microtubule basal body // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394272_at BF546274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546274 /DB_XREF=gi:11637381 /DB_XREF=UI-R-C2p-ri-e-08-0-UI.r1 /CLONE=UI-R-C2p-ri-e-08-0-UI /FEA=EST /CNT=1 /TID=Rn.38431.2 /TIER=ConsEnd /STK=0 /UG=Rn.38431 /UG_TITLE=ESTs BF546274 solute carrier family 24 (sodium/potassium/calcium exchanger), member 4 Slc24a4 314396 NM_001108051 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1394275_at BF559096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559096 /DB_XREF=gi:11668826 /DB_XREF=UI-R-C1-kv-e-03-0-UI.r1 /CLONE=UI-R-C1-kv-e-03-0-UI /FEA=EST /CNT=1 /TID=Rn.18896.3 /TIER=ConsEnd /STK=0 /UG=Rn.18896 /UG_TITLE=ESTs BF559096 1394277_at BF287357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287357 /DB_XREF=gi:11218427 /DB_XREF=EST451948 /CLONE=RGIGE92 /FEA=EST /CNT=1 /TID=Rn.81243.2 /TIER=ConsEnd /STK=0 /UG=Rn.81243 /UG_TITLE=ESTs BF287357 similar to RIKEN cDNA 2010012O05 RGD1311783 294012 NM_001134509 1394278_at AW143811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143811 /DB_XREF=gi:6163710 /DB_XREF=EST294107 /CLONE=RGICA61 /FEA=EST /CNT=1 /TID=Rn.16708.2 /TIER=ConsEnd /STK=0 /UG=Rn.16708 /UG_TITLE=ESTs AW143811 1394280_at AW140991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW140991 /DB_XREF=gi:6160759 /DB_XREF=EST291004 /CLONE=RGIAX37 /FEA=EST /CNT=1 /TID=Rn.23730.2 /TIER=ConsEnd /STK=0 /UG=Rn.23730 /UG_TITLE=ESTs, Weakly similar to G alpha interacting protein (Rattus norvegicus) (R.norvegicus) AW140991 regulator of G-protein signaling 17 Rgs17 308118 NM_001107459 0004871 // signal transducer activity // inferred from electronic annotation 1394283_at AW144132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144132 /DB_XREF=gi:6164031 /DB_XREF=EST294428 /CLONE=RGICI92 /FEA=EST /CNT=1 /TID=Rn.27481.2 /TIER=ConsEnd /STK=0 /UG=Rn.27481 /UG_TITLE=ESTs AW144132 1394284_at AW143904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143904 /DB_XREF=gi:6163803 /DB_XREF=EST294200 /CLONE=RGICC60 /FEA=EST /CNT=1 /TID=Rn.52859.2 /TIER=ConsEnd /STK=0 /UG=Rn.52859 /UG_TITLE=ESTs AW143904 1394286_at BF285394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285394 /DB_XREF=gi:11216554 /DB_XREF=EST450075 /CLONE=RGIFF85 /FEA=EST /CNT=1 /TID=Rn.7542.3 /TIER=ConsEnd /STK=0 /UG=Rn.7542 /UG_TITLE=ESTs BF285394 1394290_at BG669921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669921 /DB_XREF=gi:13891985 /DB_XREF=DRNAAME01 /CLONE=DRNAAME01 /FEA=EST /CNT=1 /TID=Rn.25146.2 /TIER=ConsEnd /STK=0 /UG=Rn.25146 /UG_TITLE=ESTs BG669921 1394291_at AI639055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639055 /DB_XREF=gi:4700089 /DB_XREF=rx04126s /CLONE=rx04126 /FEA=EST /CNT=1 /TID=Rn.43311.1 /TIER=ConsEnd /STK=0 /UG=Rn.43311 /UG_TITLE=EST AI639055 1394292_at AA848353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848353 /DB_XREF=gi:2935893 /DB_XREF=EST191113 /CLONE=RKIAB35 /FEA=EST /CNT=1 /TID=Rn.54060.1 /TIER=ConsEnd /STK=0 /UG=Rn.54060 /LL=56281 /UG_GENE=Rpml2 /UG_TITLE=ribosomal protein, mitochondrial, L2 AA848353 mitochondrial ribosomal protein L37 Mrpl37 56281 NM_001004235 0006412 // translation // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1394293_at BG664973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664973 /DB_XREF=gi:13886895 /DB_XREF=DRABVE10 /CLONE=DRABVE10 /FEA=EST /CNT=1 /TID=Rn.15794.2 /TIER=ConsEnd /STK=0 /UG=Rn.15794 /UG_TITLE=ESTs BG664973 DnaJ (Hsp40) homolog, subfamily C, member 24 Dnajc24 362184 NM_001191853 /// XM_001079802 /// XM_342483 0031072 // heat shock protein binding // inferred from electronic annotation 1394295_at BG672252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672252 /DB_XREF=gi:13894351 /DB_XREF=DRNCED04 /CLONE=DRNCED04 /FEA=EST /CNT=1 /TID=Rn.33045.2 /TIER=ConsEnd /STK=0 /UG=Rn.33045 /UG_TITLE=ESTs BG672252 1394297_at BG670107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670107 /DB_XREF=gi:13892206 /DB_XREF=DRNAAPG08 /CLONE=DRNAAPG08 /FEA=EST /CNT=1 /TID=Rn.47291.2 /TIER=ConsEnd /STK=0 /UG=Rn.47291 /UG_TITLE=ESTs BG670107 homeo box D1 Hoxd1 288151 NM_001105884 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048706 // embryonic skeletal system development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1394299_at BG669326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669326 /DB_XREF=gi:13891248 /DB_XREF=DRNAAEB11 /CLONE=DRNAAEB11 /FEA=EST /CNT=1 /TID=Rn.76746.2 /TIER=ConsEnd /STK=0 /UG=Rn.76746 /UG_TITLE=ESTs BG669326 brain expressed gene 1 /// brain expressed X-linked 2 Bex1 /// Bex2 363498 /// 501625 NM_001037365 /// NM_001077435 0002052 // positive regulation of neuroblast proliferation // inferred from direct assay /// 0006915 // apoptosis // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from direct assay /// 0048011 // nerve growth factor receptor signaling pathway // inferred from genetic interaction 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394302_at BF556622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556622 /DB_XREF=gi:11666352 /DB_XREF=UI-R-E0-dk-g-05-0-UI.r1 /CLONE=UI-R-E0-dk-g-05-0-UI /FEA=EST /CNT=1 /TID=Rn.15113.2 /TIER=ConsEnd /STK=0 /UG=Rn.15113 /UG_TITLE=ESTs BF556622 G protein-coupled receptor 115 Gpr115 501106 XM_002727183 /// XM_576521 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007218 // neuropeptide signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1394304_at BF556357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556357 /DB_XREF=gi:11666135 /DB_XREF=UI-R-A1-es-a-07-0-UI.r1 /CLONE=UI-R-A1-es-a-07-0-UI /FEA=EST /CNT=1 /TID=Rn.15634.2 /TIER=ConsEnd /STK=0 /UG=Rn.15634 /UG_TITLE=ESTs BF556357 1394306_at BF545972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545972 /DB_XREF=gi:11637079 /DB_XREF=UI-R-C2p-rd-e-05-0-UI.r1 /CLONE=UI-R-C2p-rd-e-05-0-UI /FEA=EST /CNT=1 /TID=Rn.17862.2 /TIER=ConsEnd /STK=0 /UG=Rn.17862 /UG_TITLE=ESTs, Weakly similar to B56707 protein-tyrosine kinase (R.norvegicus) BF545972 zeta-chain (TCR) associated protein kinase Zap70 301348 NM_001012002 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0006955 // immune response // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // not recorded /// 0043366 // beta selection // inferred from electronic annotation /// 0043366 // beta selection // not recorded /// 0045059 // positive thymic T cell selection // inferred from electronic annotation /// 0045059 // positive thymic T cell selection // not recorded /// 0045060 // negative thymic T cell selection // inferred from electronic annotation /// 0045060 // negative thymic T cell selection // not recorded /// 0045061 // thymic T cell selection // not recorded /// 0045061 // thymic T cell selection // inferred from electronic annotation /// 0045582 // positive regulation of T cell differentiation // not recorded /// 0045582 // positive regulation of T cell differentiation // inferred from electronic annotation /// 0046638 // positive regulation of alpha-beta T cell differentiation // inferred from electronic annotation /// 0046638 // positive regulation of alpha-beta T cell differentiation // not recorded /// 0046641 // positive regulation of alpha-beta T cell proliferation // inferred from electronic annotation /// 0046641 // positive regulation of alpha-beta T cell proliferation // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // not recorded /// 0050850 // positive regulation of calcium-mediated signaling // inferred from electronic annotation /// 0050850 // positive regulation of calcium-mediated signaling // not recorded /// 0050852 // T cell receptor signaling pathway // inferred from electronic annotation /// 0050852 // T cell receptor signaling pathway // not recorded 0001772 // immunological synapse // inferred from electronic annotation /// 0001772 // immunological synapse // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0042101 // T cell receptor complex // inferred from electronic annotation /// 0042101 // T cell receptor complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0001784 // phosphotyrosine binding // inferred from electronic annotation /// 0001784 // phosphotyrosine binding // not recorded /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1394309_at BF563936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563936 /DB_XREF=gi:11673666 /DB_XREF=UI-R-BT1-akv-h-02-0-UI.r1 /CLONE=UI-R-BT1-akv-h-02-0-UI /FEA=EST /CNT=1 /TID=Rn.47669.2 /TIER=ConsEnd /STK=0 /UG=Rn.47669 /UG_TITLE=ESTs BF563936 tektin 5 Tekt5 363538 NM_001014224 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 1394310_at BF563974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563974 /DB_XREF=gi:11673752 /DB_XREF=UI-R-C4-aky-e-10-0-UI.r1 /CLONE=UI-R-C4-aky-e-10-0-UI /FEA=EST /CNT=1 /TID=Rn.47793.2 /TIER=ConsEnd /STK=0 /UG=Rn.47793 /UG_TITLE=ESTs, Weakly similar to T24461 hypothetical protein T04F3.2 - Caenorhabditis elegans (C.elegans) BF563974 SPARC related modular calcium binding 2 Smoc2 292401 NM_001106215 0007165 // signal transduction // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // inferred from electronic annotation /// 0010811 // positive regulation of cell-substrate adhesion // not recorded /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005614 // interstitial matrix // inferred from electronic annotation /// 0005614 // interstitial matrix // not recorded /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005539 // glycosaminoglycan binding // not recorded /// 0005539 // glycosaminoglycan binding // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded 1394313_at AW919282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919282 /DB_XREF=gi:8085074 /DB_XREF=EST350586 /CLONE=RGIFP17 /FEA=EST /CNT=1 /TID=Rn.63012.2 /TIER=ConsEnd /STK=0 /UG=Rn.63012 /UG_TITLE=ESTs AW919282 Tumor necrosis factor receptor superfamily, member 11a Tnfrsf11a 498206 XM_001063501 /// XM_573424 0001503 // ossification // not recorded /// 0002250 // adaptive immune response // not recorded /// 0007275 // multicellular organismal development // not recorded /// 0009314 // response to radiation // inferred from expression pattern /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0030316 // osteoclast differentiation // not recorded /// 0031622 // positive regulation of fever // not recorded /// 0032308 // positive regulation of prostaglandin secretion // not recorded /// 0032496 // response to lipopolysaccharide // not recorded /// 0033209 // tumor necrosis factor-mediated signaling pathway // not recorded /// 0034097 // response to cytokine stimulus // not recorded /// 0034612 // response to tumor necrosis factor // not recorded /// 0043507 // positive regulation of JUN kinase activity // not recorded /// 0048535 // lymph node development // not recorded /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0060086 // circadian temperature homeostasis // not recorded /// 0060749 // mammary gland alveolus development // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // not recorded /// 0070555 // response to interleukin-1 // not recorded 0009897 // external side of plasma membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // not recorded /// 0005031 // tumor necrosis factor receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0019955 // cytokine binding // not recorded 1394315_at BF562800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562800 /DB_XREF=gi:11672530 /DB_XREF=UI-R-BJ0p-ain-a-11-0-UI.r1 /CLONE=UI-R-BJ0p-ain-a-11-0-UI /FEA=EST /CNT=1 /TID=Rn.64118.2 /TIER=ConsEnd /STK=0 /UG=Rn.64118 /UG_TITLE=ESTs, Highly similar to FASCIN (M.musculus) BF562800 similar to Fascin (Singed-like protein) LOC683788 683788 NM_001100806 0001889 // liver development // inferred from expression pattern /// 0071460 // cellular response to cell-matrix adhesion // inferred from expression pattern 0001725 // stress fiber // inferred from direct assay /// 0001726 // ruffle // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005902 // microvillus // inferred from direct assay /// 0030027 // lamellipodium // inferred from direct assay /// 0030175 // filopodium // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay 0003779 // actin binding // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0030674 // protein binding, bridging // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from electronic annotation 1394316_a_at AW920272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920272 /DB_XREF=gi:8086081 /DB_XREF=EST351576 /CLONE=RGIGT28 /FEA=EST /CNT=1 /TID=Rn.7077.2 /TIER=ConsEnd /STK=0 /UG=Rn.7077 /UG_TITLE=ESTs AW920272 tetraspanin 5 Tspan5 362048 NM_001004090 0007155 // cell adhesion // traceable author statement /// 0008283 // cell proliferation // traceable author statement 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 1394318_at AW918228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918228 /DB_XREF=gi:8084000 /DB_XREF=EST349532 /CLONE=RGIEO11 /FEA=EST /CNT=1 /TID=Rn.8144.3 /TIER=ConsEnd /STK=0 /UG=Rn.8144 /UG_TITLE=ESTs AW918228 cAMP-regulated phosphoprotein 19 Arpp19 60336 NM_031660 0007212 // dopamine receptor signaling pathway // inferred from expression pattern /// 0045722 // positive regulation of gluconeogenesis // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation 0005102 // receptor binding // not recorded /// 0015459 // potassium channel regulator activity // not recorded 1394320_at BF542448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542448 /DB_XREF=gi:11633555 /DB_XREF=UI-R-C3-si-a-09-0-UI.r1 /CLONE=UI-R-C3-si-a-09-0-UI /FEA=EST /CNT=1 /TID=Rn.30657.2 /TIER=ConsEnd /STK=0 /UG=Rn.30657 /UG_TITLE=ESTs BF542448 cyclin dependent kinase 2 Cdk2 362817 NM_199501 0006260 // DNA replication // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006813 // potassium ion transport // not recorded /// 0007049 // cell cycle // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded /// 0009636 // response to toxin // inferred from expression pattern /// 0031100 // organ regeneration // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032869 // cellular response to insulin stimulus // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0045941 // positive regulation of transcription // not recorded /// 0046686 // response to cadmium ion // inferred from expression pattern /// 0051301 // cell division // inferred from electronic annotation /// 0051591 // response to cAMP // inferred from direct assay /// 0051602 // response to electrical stimulus // inferred from direct assay 0000307 // cyclin-dependent protein kinase holoenzyme complex // not recorded /// 0000781 // chromosome, telomeric region // not recorded /// 0000793 // condensed chromosome // not recorded /// 0000805 // X chromosome // not recorded /// 0000806 // Y chromosome // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // inferred from direct assay /// 0004693 // cyclin-dependent protein kinase activity // not recorded /// 0004693 // cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0035173 // histone kinase activity // not recorded /// 0042802 // identical protein binding // not recorded 1394323_at BF523326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523326 /DB_XREF=gi:11631293 /DB_XREF=UI-R-G0-ue-f-10-0-UI.r1 /CLONE=UI-R-G0-ue-f-10-0-UI /FEA=EST /CNT=1 /TID=Rn.59881.2 /TIER=ConsEnd /STK=0 /UG=Rn.59881 /UG_TITLE=ESTs, Moderately similar to CD5R MOUSE CYCLIN-DEPENDENT KINASE 5 ACTIVATOR 1 PRECURSOR (R.norvegicus) BF523326 cyclin-dependent kinase 5, regulatory subunit 2 (p39) Cdk5r2 501164 NM_001109309 0016533 // cyclin-dependent protein kinase 5 holoenzyme complex // inferred from electronic annotation 0016534 // cyclin-dependent protein kinase 5 activator activity // inferred from electronic annotation 1394324_at BF542337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542337 /DB_XREF=gi:11633444 /DB_XREF=UI-R-C3-sf-b-11-0-UI.r1 /CLONE=UI-R-C3-sf-b-11-0-UI /FEA=EST /CNT=1 /TID=Rn.41532.2 /TIER=ConsEnd /STK=0 /UG=Rn.41532 /UG_TITLE=ESTs BF542337 1394327_at BF543040 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543040 /DB_XREF=gi:11634147 /DB_XREF=UI-R-AG1-aah-h-02-0-UI.r1 /CLONE=UI-R-AG1-aah-h-02-0-UI /FEA=EST /CNT=1 /TID=Rn.7322.2 /TIER=ConsEnd /STK=0 /UG=Rn.7322 /UG_TITLE=ESTs, Weakly similar to T19073 hypothetical protein C08B11.9 - Caenorhabditis elegans (C.elegans) BF543040 similar to chromosome 1 open reading frame 50 RGD1564804 313551 NM_001107969 1394330_at BF544149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF544149 /DB_XREF=gi:11635250 /DB_XREF=UI-R-E0-de-g-08-0-UI.r1 /CLONE=UI-R-E0-de-g-08-0-UI /FEA=EST /CNT=1 /TID=Rn.63834.1 /TIER=ConsEnd /STK=0 /UG=Rn.63834 /UG_TITLE=EST, Highly similar to S21345 retrovirus-related leucine zipper protein p40 - rat retrotransposon (R.norvegicus) BF544149 1394334_at BF545197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545197 /DB_XREF=gi:11636304 /DB_XREF=UI-R-C2p-ry-d-02-0-UI.r1 /CLONE=UI-R-C2p-ry-d-02-0-UI /FEA=EST /CNT=1 /TID=Rn.35310.2 /TIER=ConsEnd /STK=0 /UG=Rn.35310 /UG_TITLE=ESTs BF545197 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8 Chst8 308511 NM_001107504 0006790 // sulfur compound metabolic process // inferred from electronic annotation /// 0006790 // sulfur compound metabolic process // not recorded /// 0016051 // carbohydrate biosynthetic process // inferred from electronic annotation /// 0030166 // proteoglycan biosynthetic process // inferred from electronic annotation /// 0030166 // proteoglycan biosynthetic process // not recorded /// 0042446 // hormone biosynthetic process // inferred from electronic annotation /// 0042446 // hormone biosynthetic process // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0001537 // N-acetylgalactosamine 4-O-sulfotransferase activity // inferred from electronic annotation /// 0001537 // N-acetylgalactosamine 4-O-sulfotransferase activity // not recorded /// 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1394336_at BF564356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564356 /DB_XREF=gi:11674086 /DB_XREF=UI-R-C4-alo-f-06-0-UI.r1 /CLONE=UI-R-C4-alo-f-06-0-UI /FEA=EST /CNT=1 /TID=Rn.48315.2 /TIER=ConsEnd /STK=0 /UG=Rn.48315 /UG_TITLE=ESTs BF564356 sperm associated antigen 16 Spag16 501158 NM_001134728 0007283 // spermatogenesis // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005874 // microtubule // not recorded /// 0005930 // axoneme // not recorded /// 0035086 // flagellar axoneme // not recorded 0005515 // protein binding // not recorded 1394337_at BF562141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562141 /DB_XREF=gi:11671871 /DB_XREF=UI-R-E1-fs-h-07-0-UI.r1 /CLONE=UI-R-E1-fs-h-07-0-UI /FEA=EST /CNT=1 /TID=Rn.27504.3 /TIER=ConsEnd /STK=0 /UG=Rn.27504 /UG_TITLE=ESTs BF562141 gastrulation brain homeobox 2 Gbx2 114500 NM_053708 0001569 // patterning of blood vessels // not recorded /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // inferred from electronic annotation /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0021549 // cerebellum development // not recorded /// 0021549 // cerebellum development // inferred from electronic annotation /// 0021555 // midbrain-hindbrain boundary morphogenesis // not recorded /// 0021555 // midbrain-hindbrain boundary morphogenesis // inferred from electronic annotation /// 0021568 // rhombomere 2 development // not recorded /// 0021568 // rhombomere 2 development // inferred from electronic annotation /// 0021930 // granule cell precursor proliferation // not recorded /// 0021930 // granule cell precursor proliferation // inferred from electronic annotation /// 0030902 // hindbrain development // not recorded /// 0030902 // hindbrain development // inferred from electronic annotation /// 0030917 // midbrain-hindbrain boundary development // not recorded /// 0030917 // midbrain-hindbrain boundary development // inferred from electronic annotation /// 0035239 // tube morphogenesis // not recorded /// 0035239 // tube morphogenesis // inferred from electronic annotation /// 0042472 // inner ear morphogenesis // not recorded /// 0042472 // inner ear morphogenesis // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048483 // autonomic nervous system development // not recorded /// 0048483 // autonomic nervous system development // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1394338_x_at BF290004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290004 /DB_XREF=gi:11221062 /DB_XREF=EST454583 /CLONE=RGIHM41 /FEA=EST /CNT=1 /TID=Rn.66054.1 /TIER=ConsEnd /STK=0 /UG=Rn.66054 /UG_TITLE=EST BF290004 PTK2 protein tyrosine kinase 2 Ptk2 25614 NM_013081 0000165 // MAPKKK cascade // inferred from mutant phenotype /// 0000226 // microtubule cytoskeleton organization // not recorded /// 0001525 // angiogenesis // not recorded /// 0001568 // blood vessel development // not recorded /// 0001570 // vasculogenesis // not recorded /// 0001764 // neuron migration // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007172 // signal complex assembly // inferred from electronic annotation /// 0007254 // JNK cascade // inferred from mutant phenotype /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0014911 // positive regulation of smooth muscle cell migration // inferred from mutant phenotype /// 0016310 // phosphorylation // not recorded /// 0021955 // central nervous system neuron axonogenesis // not recorded /// 0030198 // extracellular matrix organization // not recorded /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0030335 // positive regulation of cell migration // inferred from mutant phenotype /// 0030336 // negative regulation of cell migration // inferred from mutant phenotype /// 0030644 // cellular chloride ion homeostasis // inferred from mutant phenotype /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0040023 // establishment of nucleus localization // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0043542 // endothelial cell migration // not recorded /// 0045444 // fat cell differentiation // inferred from expression pattern /// 0045785 // positive regulation of cell adhesion // inferred from mutant phenotype /// 0045909 // positive regulation of vasodilation // inferred from mutant phenotype /// 0046621 // negative regulation of organ growth // not recorded /// 0046685 // response to arsenic // inferred from expression pattern /// 0046777 // protein autophosphorylation // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0050766 // positive regulation of phagocytosis // inferred from mutant phenotype /// 0050771 // negative regulation of axonogenesis // not recorded /// 0050806 // positive regulation of synaptic transmission // inferred from mutant phenotype /// 0051964 // negative regulation of synaptogenesis // not recorded /// 0060252 // positive regulation of glial cell proliferation // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from direct assay /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // traceable author statement /// 0005925 // focal adhesion // inferred from electronic annotation /// 0014704 // intercalated disc // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016604 // nuclear body // inferred from direct assay /// 0030027 // lamellipodium // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // traceable author statement /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005178 // integrin binding // inferred from physical interaction /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0042169 // SH2 domain binding // not recorded /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction 1394340_at BF523172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523172 /DB_XREF=gi:11631139 /DB_XREF=UI-R-C3-sm-h-06-0-UI.r1 /CLONE=UI-R-C3-sm-h-06-0-UI /FEA=EST /CNT=1 /TID=Rn.20288.2 /TIER=ConsEnd /STK=0 /UG=Rn.20288 /UG_TITLE=ESTs, Moderately similar to INPP MOUSE INOSITOL POLYPHOSPHATE 1-PHOSPHATASE (M.musculus) BF523172 inositol polyphosphate-1-phosphatase Inpp1 316376 NM_001012131 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation 1394342_at BF557463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557463 /DB_XREF=gi:11667193 /DB_XREF=UI-R-E1-gd-d-11-0-UI.r1 /CLONE=UI-R-E1-gd-d-11-0-UI /FEA=EST /CNT=1 /TID=Rn.64033.1 /TIER=ConsEnd /STK=0 /UG=Rn.64033 /UG_TITLE=EST BF557463 1394343_s_at AW920063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920063 /DB_XREF=gi:8085975 /DB_XREF=EST351471 /CLONE=RGIGS01 /FEA=EST /CNT=1 /TID=Rn.51625.2 /TIER=ConsEnd /STK=0 /UG=Rn.51625 /UG_TITLE=ESTs AW920063 Potassium voltage-gated channel, Isk-related subfamily, gene 2 Kcne2 171138 NM_133603 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0008076 // voltage-gated potassium channel complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from direct assay /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // traceable author statement /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0015459 // potassium channel regulator activity // inferred from direct assay 1394346_at BF561763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561763 /DB_XREF=gi:11671493 /DB_XREF=UI-R-C0-il-g-11-0-UI.r1 /CLONE=UI-R-C0-il-g-11-0-UI /FEA=EST /CNT=1 /TID=Rn.76252.2 /TIER=ConsEnd /STK=0 /UG=Rn.76252 /UG_TITLE=ESTs BF561763 mannosidase, alpha, class 1A, member 2 Man1a2 295319 NM_001106452 0007585 // respiratory gaseous exchange // not recorded /// 0009100 // glycoprotein metabolic process // not recorded /// 0048286 // lung alveolus development // not recorded 0000139 // Golgi membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004571 // mannosyl-oligosaccharide 1,2-alpha-mannosidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1394347_at BF568007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF568007 /DB_XREF=gi:11677737 /DB_XREF=UI-R-BO0-ahx-g-09-0-UI.r1 /CLONE=UI-R-BO0-ahx-g-09-0-UI /FEA=EST /CNT=1 /TID=Rn.45222.2 /TIER=ConsEnd /STK=0 /UG=Rn.45222 /UG_TITLE=ESTs, Moderately similar to 2211333A peripheral membrane protein p230 (H.sapiens) BF568007 golgi autoantigen, golgin subfamily a, 4 Golga4 501069 NM_001191080 /// XM_001061798 /// XM_001077249 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 1394348_at BF545496 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545496 /DB_XREF=gi:11636603 /DB_XREF=UI-R-C1-jx-c-04-0-UI.r1 /CLONE=UI-R-C1-jx-c-04-0-UI /FEA=EST /CNT=1 /TID=Rn.77424.2 /TIER=ConsEnd /STK=0 /UG=Rn.77424 /UG_TITLE=ESTs BF545496 Rho guanine nucleotide exchange factor (GEF) 12 Arhgef12 367072 NM_001013246 0006915 // apoptosis // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0001664 // G-protein-coupled receptor binding // inferred from electronic annotation /// 0001664 // G-protein-coupled receptor binding // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394349_at BF288777 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288777 /DB_XREF=gi:11219757 /DB_XREF=EST453278 /CLONE=RGIGW30 /FEA=EST /CNT=1 /TID=Rn.28947.2 /TIER=ConsEnd /STK=0 /UG=Rn.28947 /UG_TITLE=ESTs, Highly similar to LHX3 MOUSE LIMHOMEOBOX PROTEIN LHX3 (M.musculus) BF288777 1394352_at BF543871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543871 /DB_XREF=gi:11634978 /DB_XREF=UI-R-C3-tg-b-04-0-UI.r1 /CLONE=UI-R-C3-tg-b-04-0-UI /FEA=EST /CNT=1 /TID=Rn.42129.3 /TIER=ConsEnd /STK=0 /UG=Rn.42129 /UG_TITLE=ESTs BF543871 interferon induced with helicase C domain 1 Ifih1 499801 NM_001109199 0042981 // regulation of apoptosis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0043021 // ribonucleoprotein binding // not recorded 1394354_at BF552000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552000 /DB_XREF=gi:11661730 /DB_XREF=UI-R-C2p-od-g-06-0-UI.r1 /CLONE=UI-R-C2p-od-g-06-0-UI /FEA=EST /CNT=1 /TID=Rn.27122.2 /TIER=ConsEnd /STK=0 /UG=Rn.27122 /UG_TITLE=ESTs BF552000 1394359_at BF553498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF553498 /DB_XREF=gi:11663228 /DB_XREF=UI-R-C2p-of-b-02-0-UI.r1 /CLONE=UI-R-C2p-of-b-02-0-UI /FEA=EST /CNT=1 /TID=Rn.17704.2 /TIER=ConsEnd /STK=0 /UG=Rn.17704 /UG_TITLE=ESTs BF553498 BCL2-associated transcription factor 1 Bclaf1 293017 NM_001047852 0016481 // negative regulation of transcription // not recorded /// 0043065 // positive regulation of apoptosis // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded 1394361_a_at BF556985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556985 /DB_XREF=gi:11666715 /DB_XREF=UI-R-C0-hl-g-09-0-UI.r1 /CLONE=UI-R-C0-hl-g-09-0-UI /FEA=EST /CNT=1 /TID=Rn.12718.2 /TIER=ConsEnd /STK=0 /UG=Rn.12718 /UG_TITLE=ESTs BF556985 wingless-type MMTV integration site family member 2 Wnt2 114487 XM_001059030 /// XM_575397 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from electronic annotation /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0007223 // Wnt receptor signaling pathway, calcium modulating pathway // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030324 // lung development // inferred from expression pattern /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048146 // positive regulation of fibroblast proliferation // not recorded /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0055009 // atrial cardiac muscle tissue morphogenesis // not recorded /// 0060045 // positive regulation of cardiac muscle cell proliferation // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060317 // cardiac epithelial to mesenchymal transition // not recorded /// 0060492 // lung induction // inferred from electronic annotation /// 0060492 // lung induction // not recorded /// 0060501 // positive regulation of epithelial cell proliferation involved in lung morphogenesis // inferred from electronic annotation /// 0060501 // positive regulation of epithelial cell proliferation involved in lung morphogenesis // not recorded /// 0060716 // labyrinthine layer blood vessel development // inferred from electronic annotation /// 0060716 // labyrinthine layer blood vessel development // not recorded /// 0061180 // mammary gland epithelium development // not recorded /// 0071560 // cellular response to transforming growth factor beta stimulus // not recorded /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded /// 0031012 // extracellular matrix // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0005109 // frizzled binding // inferred from electronic annotation /// 0005109 // frizzled binding // not recorded /// 0005125 // cytokine activity // not recorded 1394362_at BF546803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546803 /DB_XREF=gi:11637910 /DB_XREF=UI-R-C2p-qv-e-04-0-UI.r1 /CLONE=UI-R-C2p-qv-e-04-0-UI /FEA=EST /CNT=1 /TID=Rn.38655.2 /TIER=ConsEnd /STK=0 /UG=Rn.38655 /UG_TITLE=ESTs, Weakly similar to T19722 hypothetical protein C34E11.3 - Caenorhabditis elegans (C.elegans) BF546803 Temporarily Assigned Gene name family member (tag-241)-like LOC100363805 100363805 XM_002725458 1394363_at H34775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H34775 /DB_XREF=gi:980192 /DB_XREF=EST112003 /CLONE=RPNCR63 /FEA=EST /CNT=1 /TID=Rn.42104.2 /TIER=ConsEnd /STK=0 /UG=Rn.42104 /UG_TITLE=ESTs, Weakly similar to M01B12.5.p (Caenorhabditis elegans) (C.elegans) H34775 RIO kinase 3 (yeast) Riok3 361293 NM_001108423 0006468 // protein phosphorylation // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1394367_at BF543779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543779 /DB_XREF=gi:11634886 /DB_XREF=UI-R-C3-tc-c-05-0-UI.r1 /CLONE=UI-R-C3-tc-c-05-0-UI /FEA=EST /CNT=1 /TID=Rn.48985.2 /TIER=ConsEnd /STK=0 /UG=Rn.48985 /UG_TITLE=ESTs BF543779 delta-like 4 (Drosophila) Dll4 311332 NM_001107760 0001525 // angiogenesis // not recorded /// 0007154 // cell communication // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0043537 // negative regulation of blood vessel endothelial cell migration // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005112 // Notch binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394368_x_at BF288608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288608 /DB_XREF=gi:11219678 /DB_XREF=EST453199 /CLONE=RGIGV44 /FEA=EST /CNT=1 /TID=Rn.66042.1 /TIER=ConsEnd /STK=0 /UG=Rn.66042 /UG_TITLE=EST BF288608 Similar to RIKEN cDNA 1700016G05 RGD1311823 362346 NM_001108625 0006508 // proteolysis // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation 1394371_at BF556765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556765 /DB_XREF=gi:11666489 /DB_XREF=UI-R-E1-fc-h-03-0-UI.r1 /CLONE=UI-R-E1-fc-h-03-0-UI /FEA=EST /CNT=1 /TID=Rn.8890.2 /TIER=ConsEnd /STK=0 /UG=Rn.8890 /UG_TITLE=ESTs BF556765 nuclear fragile X mental retardation protein interacting protein 1 Nufip1 364430 NM_001007758 0000492 // box C/D snoRNP assembly // inferred from electronic annotation /// 0000492 // box C/D snoRNP assembly // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005726 // perichromatin fibrils // inferred from electronic annotation /// 0005726 // perichromatin fibrils // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0008023 // transcription elongation factor complex // inferred from electronic annotation /// 0008023 // transcription elongation factor complex // not recorded /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded /// 0022626 // cytosolic ribosome // inferred from electronic annotation /// 0022626 // cytosolic ribosome // not recorded /// 0048786 // presynaptic active zone // inferred from electronic annotation /// 0048786 // presynaptic active zone // not recorded /// 0070761 // pre-snoRNP complex // inferred from electronic annotation /// 0070761 // pre-snoRNP complex // not recorded 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030515 // snoRNA binding // inferred from electronic annotation /// 0030515 // snoRNA binding // not recorded /// 0030674 // protein binding, bridging // inferred from electronic annotation /// 0030674 // protein binding, bridging // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1394375_x_at BF554138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554138 /DB_XREF=gi:11663868 /DB_XREF=UI-R-C1-ju-b-05-0-UI.r1 /CLONE=UI-R-C1-ju-b-05-0-UI /FEA=EST /CNT=1 /TID=Rn.20865.2 /TIER=ConsEnd /STK=0 /UG=Rn.20865 /UG_TITLE=ESTs BF554138 B-cell CLL/lymphoma 6, member B (zinc finger protein) Bcl6b 360551 NM_001108279 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1394378_at BF561921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561921 /DB_XREF=gi:11671651 /DB_XREF=UI-R-A1-ez-f-01-0-UI.r1 /CLONE=UI-R-A1-ez-f-01-0-UI /FEA=EST /CNT=1 /TID=Rn.8815.3 /TIER=ConsEnd /STK=0 /UG=Rn.8815 /UG_TITLE=ESTs BF561921 methyltransferase 11 domain containing 1 Mett11d1 305845 XM_001053790 /// XM_223974 0006412 // translation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005739 // mitochondrion // not recorded 0005507 // copper ion binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation 1394383_at BF543872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543872 /DB_XREF=gi:11634979 /DB_XREF=UI-R-C3-tg-b-05-0-UI.r1 /CLONE=UI-R-C3-tg-b-05-0-UI /FEA=EST /CNT=1 /TID=Rn.40585.3 /TIER=ConsEnd /STK=0 /UG=Rn.40585 /UG_TITLE=ESTs BF543872 Similar to RIKEN cDNA 2610110G12 RGD1303066 361789 NM_212498 1394384_at BI284462 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284462 /DB_XREF=gi:14937163 /DB_XREF=UI-R-CX0s-ccr-d-02-0-UI.s1 /CLONE=UI-R-CX0s-ccr-d-02-0-UI /FEA=EST /CNT=1 /TID=Rn.78478.1 /TIER=ConsEnd /STK=1 /UG=Rn.78478 /UG_TITLE=EST, Highly similar to D4DR RAT D(4) DOPAMINE RECEPTOR (R.norvegicus) BI284462 dopamine receptor D4 Drd4 25432 NM_012944 0000187 // activation of MAPK activity // not recorded /// 0001662 // behavioral fear response // inferred from mutant phenotype /// 0001963 // synaptic transmission, dopaminergic // inferred from direct assay /// 0001963 // synaptic transmission, dopaminergic // inferred from mutant phenotype /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0001975 // response to amphetamine // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007194 // negative regulation of adenylate cyclase activity // not recorded /// 0007195 // inhibition of adenylate cyclase activity by dopamine receptor signaling pathway // inferred from electronic annotation /// 0007195 // inhibition of adenylate cyclase activity by dopamine receptor signaling pathway // not recorded /// 0007212 // dopamine receptor signaling pathway // inferred from direct assay /// 0007212 // dopamine receptor signaling pathway // not recorded /// 0007614 // short-term memory // inferred from mutant phenotype /// 0007626 // locomotory behavior // traceable author statement /// 0008306 // associative learning // inferred from mutant phenotype /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0008355 // olfactory learning // inferred from mutant phenotype /// 0030818 // negative regulation of cAMP biosynthetic process // not recorded /// 0032417 // positive regulation of sodium:hydrogen antiporter activity // not recorded /// 0033674 // positive regulation of kinase activity // not recorded /// 0034776 // response to histamine // not recorded /// 0042053 // regulation of dopamine metabolic process // inferred from electronic annotation /// 0042053 // regulation of dopamine metabolic process // not recorded /// 0042596 // fear response // not recorded /// 0042596 // fear response // inferred from electronic annotation /// 0046928 // regulation of neurotransmitter secretion // inferred from mutant phenotype /// 0048148 // behavioral response to cocaine // inferred from electronic annotation /// 0048148 // behavioral response to cocaine // not recorded /// 0050482 // arachidonic acid secretion // not recorded /// 0050709 // negative regulation of protein secretion // not recorded /// 0050804 // regulation of synaptic transmission // inferred from direct assay /// 0050848 // regulation of calcium-mediated signaling // inferred from mutant phenotype /// 0051927 // negative regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0060080 // regulation of inhibitory postsynaptic membrane potential // inferred from electronic annotation /// 0060080 // regulation of inhibitory postsynaptic membrane potential // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // non-traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005938 // cell cortex // inferred from direct assay /// 0012506 // vesicle membrane // inferred from direct assay /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0001591 // dopamine receptor activity, coupled via Gi/Go // not recorded /// 0001593 // dopamine D4 receptor activity // inferred from direct assay /// 0001593 // dopamine D4 receptor activity // not recorded /// 0001593 // dopamine D4 receptor activity // traceable author statement /// 0001593 // dopamine D4 receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004952 // dopamine receptor activity // inferred from electronic annotation /// 0004952 // dopamine receptor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008144 // drug binding // inferred from direct assay /// 0008144 // drug binding // not recorded /// 0017124 // SH3 domain binding // not recorded /// 0035240 // dopamine binding // inferred from direct assay /// 0035240 // dopamine binding // not recorded 1394385_s_at BI284462 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284462 /DB_XREF=gi:14937163 /DB_XREF=UI-R-CX0s-ccr-d-02-0-UI.s1 /CLONE=UI-R-CX0s-ccr-d-02-0-UI /FEA=EST /CNT=1 /TID=Rn.78478.1 /TIER=ConsEnd /STK=1 /UG=Rn.78478 /UG_TITLE=EST, Highly similar to D4DR RAT D(4) DOPAMINE RECEPTOR (R.norvegicus) BI284462 dopamine receptor D4 Drd4 25432 NM_012944 0000187 // activation of MAPK activity // not recorded /// 0001662 // behavioral fear response // inferred from mutant phenotype /// 0001963 // synaptic transmission, dopaminergic // inferred from direct assay /// 0001963 // synaptic transmission, dopaminergic // inferred from mutant phenotype /// 0001975 // response to amphetamine // inferred from electronic annotation /// 0001975 // response to amphetamine // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007194 // negative regulation of adenylate cyclase activity // not recorded /// 0007195 // inhibition of adenylate cyclase activity by dopamine receptor signaling pathway // inferred from electronic annotation /// 0007195 // inhibition of adenylate cyclase activity by dopamine receptor signaling pathway // not recorded /// 0007212 // dopamine receptor signaling pathway // inferred from direct assay /// 0007212 // dopamine receptor signaling pathway // not recorded /// 0007614 // short-term memory // inferred from mutant phenotype /// 0007626 // locomotory behavior // traceable author statement /// 0008306 // associative learning // inferred from mutant phenotype /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0008355 // olfactory learning // inferred from mutant phenotype /// 0030818 // negative regulation of cAMP biosynthetic process // not recorded /// 0032417 // positive regulation of sodium:hydrogen antiporter activity // not recorded /// 0033674 // positive regulation of kinase activity // not recorded /// 0034776 // response to histamine // not recorded /// 0042053 // regulation of dopamine metabolic process // inferred from electronic annotation /// 0042053 // regulation of dopamine metabolic process // not recorded /// 0042596 // fear response // not recorded /// 0042596 // fear response // inferred from electronic annotation /// 0046928 // regulation of neurotransmitter secretion // inferred from mutant phenotype /// 0048148 // behavioral response to cocaine // inferred from electronic annotation /// 0048148 // behavioral response to cocaine // not recorded /// 0050482 // arachidonic acid secretion // not recorded /// 0050709 // negative regulation of protein secretion // not recorded /// 0050804 // regulation of synaptic transmission // inferred from direct assay /// 0050848 // regulation of calcium-mediated signaling // inferred from mutant phenotype /// 0051927 // negative regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0060080 // regulation of inhibitory postsynaptic membrane potential // inferred from electronic annotation /// 0060080 // regulation of inhibitory postsynaptic membrane potential // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // non-traceable author statement /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005938 // cell cortex // inferred from direct assay /// 0012506 // vesicle membrane // inferred from direct assay /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0001591 // dopamine receptor activity, coupled via Gi/Go // not recorded /// 0001593 // dopamine D4 receptor activity // inferred from direct assay /// 0001593 // dopamine D4 receptor activity // not recorded /// 0001593 // dopamine D4 receptor activity // traceable author statement /// 0001593 // dopamine D4 receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004952 // dopamine receptor activity // inferred from electronic annotation /// 0004952 // dopamine receptor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008144 // drug binding // inferred from direct assay /// 0008144 // drug binding // not recorded /// 0017124 // SH3 domain binding // not recorded /// 0035240 // dopamine binding // inferred from direct assay /// 0035240 // dopamine binding // not recorded 1394386_s_at BE107955 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107955 /DB_XREF=gi:8500060 /DB_XREF=UI-R-CA0-awy-g-01-0-UI.s1 /CLONE=UI-R-CA0-awy-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.51354.1 /TIER=ConsEnd /STK=2 /UG=Rn.51354 /UG_TITLE=ESTs BE107955 vacuolar protein sorting 52 homolog (S. cerevisiae) Vps52 25218 NM_033097 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1394387_at BM383527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383527 /DB_XREF=gi:18183580 /DB_XREF=UI-R-DM1-cka-o-06-0-UI.s1 /CLONE=UI-R-DM1-cka-o-06-0-UI /FEA=EST /CNT=11 /TID=Rn.56106.1 /TIER=ConsEnd /STK=1 /UG=Rn.56106 /UG_TITLE=ESTs BM383527 coiled-coil domain containing 34 Ccdc34 362187 NM_001108587 1394388_at AA858844 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858844 /DB_XREF=gi:4229037 /DB_XREF=UI-R-A0-bb-c-06-0-UI.s1 /CLONE=UI-R-A0-bb-c-06-0-UI /FEA=EST /CNT=13 /TID=Rn.34289.1 /TIER=ConsEnd /STK=1 /UG=Rn.34289 /UG_TITLE=ESTs AA858844 hypothetical LOC100125371 LOC100125371 100125371 1394389_at BF283108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283108 /DB_XREF=gi:11214178 /DB_XREF=EST447699 /CLONE=RGIDX63 /FEA=EST /CNT=10 /TID=Rn.56011.1 /TIER=ConsEnd /STK=1 /UG=Rn.56011 /UG_TITLE=ESTs BF283108 1394390_at BF394739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394739 /DB_XREF=gi:11379697 /DB_XREF=UI-R-CA0-bge-d-01-0-UI.s1 /CLONE=UI-R-CA0-bge-d-01-0-UI /FEA=EST /CNT=9 /TID=Rn.51029.1 /TIER=ConsEnd /STK=1 /UG=Rn.51029 /UG_TITLE=ESTs BF394739 1394391_at AW524813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524813 /DB_XREF=gi:7167198 /DB_XREF=UI-R-BO0-ahy-f-03-0-UI.s1 /CLONE=UI-R-BO0-ahy-f-03-0-UI /FEA=EST /CNT=20 /TID=Rn.53928.1 /TIER=ConsEnd /STK=1 /UG=Rn.53928 /UG_TITLE=ESTs AW524813 MON2 homolog (S. cerevisiae) Mon2 314894 XM_001053843 /// XM_001054316 /// XM_001054664 /// XM_002726921 /// XM_002726922 /// XM_002729797 0006895 // Golgi to endosome transport // inferred from sequence or structural similarity 0005488 // binding // inferred from electronic annotation 1394392_at BI289554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289554 /DB_XREF=gi:14947244 /DB_XREF=UI-R-DK0-cff-d-09-0-UI.s1 /CLONE=UI-R-DK0-cff-d-09-0-UI /FEA=EST /CNT=11 /TID=Rn.45368.1 /TIER=ConsEnd /STK=1 /UG=Rn.45368 /UG_TITLE=ESTs, Weakly similar to T27810 hypothetical protein ZK265.5 - Caenorhabditis elegans (C.elegans) BI289554 fat storage-inducing transmembrane protein 2 Fitm2 311617 NM_001107799 0010866 // regulation of triglyceride biosynthetic process // not recorded /// 0010890 // positive regulation of sequestering of triglyceride // not recorded /// 0034389 // lipid particle organization // not recorded /// 0035356 // cellular triglyceride homeostasis // not recorded 0005739 // mitochondrion // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded 1394393_at BE114562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114562 /DB_XREF=gi:8506707 /DB_XREF=UI-R-BJ1-awn-a-10-0-UI.s1 /CLONE=UI-R-BJ1-awn-a-10-0-UI /FEA=EST /CNT=10 /TID=Rn.41370.1 /TIER=ConsEnd /STK=1 /UG=Rn.41370 /UG_TITLE=ESTs, Highly similar to UBP7_HUMAN UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 7 (H.sapiens) BE114562 ubiquitin specific peptidase 7 (herpes virus-associated) Usp7 360471 NM_001024790 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016579 // protein deubiquitination // inferred from direct assay /// 0016579 // protein deubiquitination // not recorded /// 0016579 // protein deubiquitination // inferred from sequence or structural similarity /// 0031647 // regulation of protein stability // inferred from direct assay /// 0051090 // regulation of transcription factor activity // not recorded /// 0051090 // regulation of transcription factor activity // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0002039 // p53 binding // not recorded /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0004221 // ubiquitin thiolesterase activity // inferred from sequence or structural similarity /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0004843 // ubiquitin-specific protease activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay 1394394_at BF407181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407181 /DB_XREF=gi:11395156 /DB_XREF=UI-R-BJ2-bqw-f-03-0-UI.s1 /CLONE=UI-R-BJ2-bqw-f-03-0-UI /FEA=EST /CNT=9 /TID=Rn.54184.1 /TIER=ConsEnd /STK=1 /UG=Rn.54184 /UG_TITLE=ESTs BF407181 1394395_at BG668719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668719 /DB_XREF=gi:13890641 /DB_XREF=DRNBWC10 /CLONE=DRNBWC10 /FEA=EST /CNT=8 /TID=Rn.48621.1 /TIER=ConsEnd /STK=1 /UG=Rn.48621 /UG_TITLE=ESTs BG668719 1394396_at AA997657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997657 /DB_XREF=gi:4280939 /DB_XREF=UI-R-C0-hm-b-10-0-UI.s1 /CLONE=UI-R-C0-hm-b-10-0-UI /FEA=EST /CNT=8 /TID=Rn.43840.1 /TIER=ConsEnd /STK=1 /UG=Rn.43840 /UG_TITLE=ESTs AA997657 1394397_at BF522734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522734 /DB_XREF=gi:11630701 /DB_XREF=UI-R-Y0-uv-g-04-0-UI.r1 /CLONE=UI-R-Y0-uv-g-04-0-UI /FEA=EST /CNT=8 /TID=Rn.38720.1 /TIER=ConsEnd /STK=1 /UG=Rn.38720 /UG_TITLE=ESTs, Weakly similar to PBK1 protein (H.sapiens) BF522734 Ribosomal L1 domain containing 1 Rsl1d1 302898 NM_001008876 0006396 // RNA processing // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0032880 // regulation of protein localization // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1394398_at AI556697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556697 /DB_XREF=gi:4489060 /DB_XREF=UI-R-C2p-rj-d-09-0-UI.s1 /CLONE=UI-R-C2p-rj-d-09-0-UI /FEA=EST /CNT=8 /TID=Rn.35361.1 /TIER=ConsEnd /STK=1 /UG=Rn.35361 /UG_TITLE=ESTs AI556697 1394399_at AW523958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523958 /DB_XREF=gi:7166343 /DB_XREF=UI-R-BO0-aie-h-11-0-UI.s1 /CLONE=UI-R-BO0-aie-h-11-0-UI /FEA=EST /CNT=8 /TID=Rn.29946.1 /TIER=ConsEnd /STK=1 /UG=Rn.29946 /UG_TITLE=ESTs AW523958 1394400_at BF542890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542890 /DB_XREF=gi:11633997 /DB_XREF=UI-R-C3-to-f-06-0-UI.r1 /CLONE=UI-R-C3-to-f-06-0-UI /FEA=EST /CNT=9 /TID=Rn.49004.1 /TIER=ConsEnd /STK=1 /UG=Rn.49004 /UG_TITLE=ESTs BF542890 1394401_at BF396857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396857 /DB_XREF=gi:11381839 /DB_XREF=UI-R-BS2-bew-a-03-0-UI.s1 /CLONE=UI-R-BS2-bew-a-03-0-UI /FEA=EST /CNT=8 /TID=Rn.46942.1 /TIER=ConsEnd /STK=1 /UG=Rn.46942 /UG_TITLE=ESTs BF396857 ELOVL family member 6, elongation of long chain fatty acids (yeast) Elovl6 171402 NM_134383 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0030497 // fatty acid elongation // inferred from electronic annotation /// 0030497 // fatty acid elongation // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // not recorded 1394402_at BG381031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381031 /DB_XREF=gi:13305503 /DB_XREF=UI-R-CT0-bug-d-10-0-UI.s1 /CLONE=UI-R-CT0-bug-d-10-0-UI /FEA=EST /CNT=8 /TID=Rn.28104.1 /TIER=ConsEnd /STK=1 /UG=Rn.28104 /UG_TITLE=ESTs BG381031 1394403_at BI289580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289580 /DB_XREF=gi:14947296 /DB_XREF=UI-R-DK0-cff-f-12-0-UI.s1 /CLONE=UI-R-DK0-cff-f-12-0-UI /FEA=EST /CNT=8 /TID=Rn.53905.1 /TIER=ConsEnd /STK=1 /UG=Rn.53905 /UG_TITLE=ESTs, Weakly similar to B0495.5.p (Caenorhabditis elegans) (C.elegans) BI289580 spermatogenesis associated 20 Spata20 360604 NM_199402 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // non-traceable author statement /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394404_at BF393048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393048 /DB_XREF=gi:11377908 /DB_XREF=UI-R-CA0-bgp-e-04-0-UI.s1 /CLONE=UI-R-CA0-bgp-e-04-0-UI /FEA=EST /CNT=8 /TID=Rn.46933.1 /TIER=ConsEnd /STK=1 /UG=Rn.46933 /UG_TITLE=ESTs, Moderately similar to SG2N_RAT Cell-cycle autoantigen SG2NA (SG2 antigen) (Fragment) (R.norvegicus) BF393048 striatin, calmodulin binding protein 4 Strn4 308392 NM_001107480 /// NM_001161809 0000159 // protein phosphatase type 2A complex // not recorded /// 0043197 // dendritic spine // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0032403 // protein complex binding // inferred from direct assay /// 0032403 // protein complex binding // not recorded /// 0051721 // protein phosphatase 2A binding // not recorded /// 0070016 // armadillo repeat domain binding // not recorded 1394405_at AI232356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232356 /DB_XREF=gi:3816236 /DB_XREF=EST229044 /CLONE=RKICA62 /FEA=EST /CNT=8 /TID=Rn.41393.1 /TIER=ConsEnd /STK=1 /UG=Rn.41393 /UG_TITLE=ESTs AI232356 1394406_at AW529108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529108 /DB_XREF=gi:7171522 /DB_XREF=UI-R-BO1-ajp-b-07-0-UI.s1 /CLONE=UI-R-BO1-ajp-b-07-0-UI /FEA=EST /CNT=7 /TID=Rn.64195.1 /TIER=ConsEnd /STK=1 /UG=Rn.64195 /UG_TITLE=ESTs AW529108 1394407_at AW530287 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530287 /DB_XREF=gi:7172701 /DB_XREF=UI-R-BU0-amu-h-04-0-UI.s1 /CLONE=UI-R-BU0-amu-h-04-0-UI /FEA=EST /CNT=7 /TID=Rn.28162.1 /TIER=ConsEnd /STK=1 /UG=Rn.28162 /UG_TITLE=ESTs AW530287 1394408_at AI717274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717274 /DB_XREF=gi:5034530 /DB_XREF=UI-R-Y0-aca-b-11-0-UI.s1 /CLONE=UI-R-Y0-aca-b-11-0-UI /FEA=EST /CNT=7 /TID=Rn.41540.1 /TIER=ConsEnd /STK=1 /UG=Rn.41540 /UG_TITLE=ESTs AI717274 similar to hypothetical protein FLJ22671 RGD1563692 501185 NM_001109311 1394409_at BE097621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097621 /DB_XREF=gi:8488552 /DB_XREF=UI-R-BO1-apz-g-08-0-UI.s1 /CLONE=UI-R-BO1-apz-g-08-0-UI /FEA=EST /CNT=7 /TID=Rn.49298.1 /TIER=ConsEnd /STK=1 /UG=Rn.49298 /UG_TITLE=ESTs BE097621 melanoma associated antigen (mutated) 1 Mum1 362838 NM_001108736 0006281 // DNA repair // not recorded /// 0006281 // DNA repair // inferred from sequence or structural similarity /// 0006281 // DNA repair // inferred from electronic annotation /// 0006325 // chromatin organization // not recorded /// 0006325 // chromatin organization // inferred from sequence or structural similarity /// 0006325 // chromatin organization // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0031491 // nucleosome binding // not recorded /// 0031491 // nucleosome binding // inferred from sequence or structural similarity /// 0031491 // nucleosome binding // inferred from electronic annotation 1394410_at BF393802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393802 /DB_XREF=gi:11378665 /DB_XREF=UI-R-CA0-bgv-b-03-0-UI.s1 /CLONE=UI-R-CA0-bgv-b-03-0-UI /FEA=EST /CNT=7 /TID=Rn.46692.1 /TIER=ConsEnd /STK=1 /UG=Rn.46692 /UG_TITLE=ESTs BF393802 1394411_at BF410745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410745 /DB_XREF=gi:11398720 /DB_XREF=UI-R-CA0-bmc-d-10-0-UI.s1 /CLONE=UI-R-CA0-bmc-d-10-0-UI /FEA=EST /CNT=7 /TID=Rn.53684.1 /TIER=ConsEnd /STK=1 /UG=Rn.53684 /UG_TITLE=ESTs BF410745 similar to novel protein RGD1560608 500724 NM_001109280 1394412_at AI144648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144648 /DB_XREF=gi:3666447 /DB_XREF=UI-R-BT0-pl-e-02-0-UI.s1 /CLONE=UI-R-BT0-pl-e-02-0-UI /FEA=EST /CNT=11 /TID=Rn.27631.1 /TIER=ConsEnd /STK=1 /UG=Rn.27631 /UG_TITLE=ESTs AI144648 anoctamin 3 Ano3 311287 XM_001080134 /// XM_230381 1394413_at AA819514 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819514 /DB_XREF=gi:4228650 /DB_XREF=UI-R-A0-bl-d-06-0-UI.s1 /CLONE=UI-R-A0-bl-d-06-0-UI /FEA=EST /CNT=10 /TID=Rn.40069.1 /TIER=ConsEnd /STK=1 /UG=Rn.40069 /UG_TITLE=ESTs AA819514 1394414_at BF386706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386706 /DB_XREF=gi:11371530 /DB_XREF=UI-R-CA1-bbg-e-07-0-UI.s1 /CLONE=UI-R-CA1-bbg-e-07-0-UI /FEA=EST /CNT=9 /TID=Rn.40385.1 /TIER=ConsEnd /STK=1 /UG=Rn.40385 /UG_TITLE=ESTs BF386706 Yip1 domain family, member 4 Yipf4 362699 NM_001009712 0005783 // endoplasmic reticulum // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1394415_at AI535444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535444 /DB_XREF=gi:4449579 /DB_XREF=UI-R-C3-sy-b-07-0-UI.s1 /CLONE=UI-R-C3-sy-b-07-0-UI /FEA=EST /CNT=9 /TID=Rn.37343.1 /TIER=ConsEnd /STK=1 /UG=Rn.37343 /UG_TITLE=ESTs, Highly similar to TRA1 MOUSE TNF RECEPTOR ASSOCIATED FACTOR 1 (M.musculus) AI535444 1394416_at AI176741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176741 /DB_XREF=gi:3727379 /DB_XREF=EST220334 /CLONE=ROVBW26 /FEA=EST /CNT=7 /TID=Rn.52248.1 /TIER=ConsEnd /STK=1 /UG=Rn.52248 /UG_TITLE=ESTs AI176741 1394417_at BF396165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396165 /DB_XREF=gi:11381177 /DB_XREF=UI-R-BS2-bdv-e-05-0-UI.s1 /CLONE=UI-R-BS2-bdv-e-05-0-UI /FEA=EST /CNT=7 /TID=Rn.34974.1 /TIER=ConsEnd /STK=1 /UG=Rn.34974 /UG_TITLE=ESTs, Weakly similar to A56577 microtubule-associated protein MAP 1B - rat (R.norvegicus) BF396165 1394418_at BG375036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375036 /DB_XREF=gi:13299508 /DB_XREF=UI-R-CV1-bst-d-04-0-UI.s1 /CLONE=UI-R-CV1-bst-d-04-0-UI /FEA=EST /CNT=7 /TID=Rn.38898.1 /TIER=ConsEnd /STK=1 /UG=Rn.38898 /UG_TITLE=ESTs BG375036 1394419_at BE109109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109109 /DB_XREF=gi:8501214 /DB_XREF=UI-R-BS1-azb-a-12-0-UI.s1 /CLONE=UI-R-BS1-azb-a-12-0-UI /FEA=EST /CNT=6 /TID=Rn.51673.1 /TIER=ConsEnd /STK=1 /UG=Rn.51673 /UG_TITLE=ESTs BE109109 Rho GTPase activating protein 11A Arhgap11a 296060 NM_001168524 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 1394420_at BF287027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287027 /DB_XREF=gi:11218097 /DB_XREF=EST451618 /CLONE=RGIFY13 /FEA=EST /CNT=6 /TID=Rn.55409.1 /TIER=ConsEnd /STK=1 /UG=Rn.55409 /UG_TITLE=ESTs BF287027 1394421_at BF282980 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282980 /DB_XREF=gi:11214050 /DB_XREF=EST447571 /CLONE=RGIDV83 /FEA=EST /CNT=6 /TID=Rn.56121.1 /TIER=ConsEnd /STK=1 /UG=Rn.56121 /UG_TITLE=ESTs BF282980 1394422_at AI555865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555865 /DB_XREF=gi:4488228 /DB_XREF=UI-R-C2p-qx-a-10-0-UI.s1 /CLONE=UI-R-C2p-qx-a-10-0-UI /FEA=EST /CNT=6 /TID=Rn.48214.1 /TIER=ConsEnd /STK=1 /UG=Rn.48214 /UG_TITLE=ESTs, Weakly similar to T20262 hypothetical protein C55A6.2 - Caenorhabditis elegans (C.elegans) AI555865 tubulin tyrosine ligase-like family, member 7 Ttll7 310982 XM_001077354 /// XM_227828 0006464 // protein modification process // inferred from electronic annotation 0004835 // tubulin-tyrosine ligase activity // inferred from electronic annotation 1394423_at BF398752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398752 /DB_XREF=gi:11383716 /DB_XREF=UI-R-BS2-bes-a-10-0-UI.s1 /CLONE=UI-R-BS2-bes-a-10-0-UI /FEA=EST /CNT=6 /TID=Rn.58302.1 /TIER=ConsEnd /STK=1 /UG=Rn.58302 /UG_TITLE=ESTs BF398752 1394424_at AI547622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547622 /DB_XREF=gi:4465110 /DB_XREF=UI-R-C3-sz-d-06-0-UI.s1 /CLONE=UI-R-C3-sz-d-06-0-UI /FEA=EST /CNT=6 /TID=Rn.42118.1 /TIER=ConsEnd /STK=1 /UG=Rn.42118 /UG_TITLE=ESTs AI547622 coiled-coil domain containing 104 Ccdc104 289859 NM_001024866 1394425_at BE101933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101933 /DB_XREF=gi:8493996 /DB_XREF=UI-R-BO1-aqd-g-01-0-UI.s1 /CLONE=UI-R-BO1-aqd-g-01-0-UI /FEA=EST /CNT=6 /TID=Rn.50151.1 /TIER=ConsEnd /STK=1 /UG=Rn.50151 /UG_TITLE=ESTs BE101933 1394426_at AW532089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532089 /DB_XREF=gi:7174503 /DB_XREF=UI-R-C4-ali-b-04-0-UI.s1 /CLONE=UI-R-C4-ali-b-04-0-UI /FEA=EST /CNT=6 /TID=Rn.44986.1 /TIER=ConsEnd /STK=1 /UG=Rn.44986 /UG_TITLE=ESTs AW532089 1394427_at AW524670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524670 /DB_XREF=gi:7167055 /DB_XREF=UI-R-BO0-aib-a-10-0-UI.s1 /CLONE=UI-R-BO0-aib-a-10-0-UI /FEA=EST /CNT=6 /TID=Rn.45902.1 /TIER=ConsEnd /STK=1 /UG=Rn.45902 /UG_TITLE=ESTs AW524670 1394428_at BF403190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403190 /DB_XREF=gi:11391165 /DB_XREF=UI-R-CA0-bhs-g-03-0-UI.s1 /CLONE=UI-R-CA0-bhs-g-03-0-UI /FEA=EST /CNT=6 /TID=Rn.63065.1 /TIER=ConsEnd /STK=1 /UG=Rn.63065 /UG_TITLE=ESTs BF403190 1394429_at BF413088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413088 /DB_XREF=gi:11401077 /DB_XREF=UI-R-CA0-bod-e-09-0-UI.s1 /CLONE=UI-R-CA0-bod-e-09-0-UI /FEA=EST /CNT=6 /TID=Rn.62240.1 /TIER=ConsEnd /STK=1 /UG=Rn.62240 /UG_TITLE=ESTs BF413088 1394430_at AI511275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511275 /DB_XREF=gi:4416974 /DB_XREF=UI-R-C3-sv-c-03-0-UI.s1 /CLONE=UI-R-C3-sv-c-03-0-UI /FEA=EST /CNT=6 /TID=Rn.32345.1 /TIER=ConsEnd /STK=1 /UG=Rn.32345 /UG_TITLE=ESTs AI511275 1394431_at AI704014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI704014 /DB_XREF=gi:4991914 /DB_XREF=UI-R-AC1-xq-c-06-0-UI.s1 /CLONE=UI-R-AC1-xq-c-06-0-UI /FEA=EST /CNT=6 /TID=Rn.35329.1 /TIER=ConsEnd /STK=1 /UG=Rn.35329 /UG_TITLE=ESTs AI704014 cytidine and dCMP deaminase domain containing 1 Cdadc1 361052 NM_001012156 0003824 // catalytic activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1394432_at AI408385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408385 /DB_XREF=gi:4251889 /DB_XREF=EST236675 /CLONE=ROVEP67 /FEA=EST /CNT=6 /TID=Rn.40722.1 /TIER=ConsEnd /STK=1 /UG=Rn.40722 /UG_TITLE=ESTs AI408385 zinc finger, FYVE domain containing 1 Zfyve1 299188 NM_001106743 0005783 // endoplasmic reticulum // not recorded /// 0005795 // Golgi stack // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0005545 // phosphatidylinositol binding // not recorded /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043325 // phosphatidylinositol-3,4-bisphosphate binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1394433_at BF408149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408149 /DB_XREF=gi:11396124 /DB_XREF=UI-R-BJ2-bra-c-03-0-UI.s1 /CLONE=UI-R-BJ2-bra-c-03-0-UI /FEA=EST /CNT=6 /TID=Rn.61591.1 /TIER=ConsEnd /STK=1 /UG=Rn.61591 /UG_TITLE=ESTs, Weakly similar to TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (R.norvegicus) BF408149 katanin p60 subunit A-like 1 Katnal1 288449 NM_001006956 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008568 // microtubule-severing ATPase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1394434_at BF414439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414439 /DB_XREF=gi:11402423 /DB_XREF=UI-R-CA0-bpa-d-06-0-UI.s1 /CLONE=UI-R-CA0-bpa-d-06-0-UI /FEA=EST /CNT=6 /TID=Rn.62538.1 /TIER=ConsEnd /STK=1 /UG=Rn.62538 /UG_TITLE=ESTs BF414439 SNF1-like kinase 2 Snf1lk2 315649 XR_085897 /// XR_086323 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0046626 // regulation of insulin receptor signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1394435_at AI703874 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI703874 /DB_XREF=gi:4991774 /DB_XREF=UI-R-AB1-yy-e-08-0-UI.s1 /CLONE=UI-R-AB1-yy-e-08-0-UI /FEA=EST /CNT=6 /TID=Rn.35269.1 /TIER=ConsEnd /STK=1 /UG=Rn.35269 /UG_TITLE=ESTs, Weakly similar to T15354 hypothetical protein B0410.2 - Caenorhabditis elegans (C.elegans) AI703874 vang-like 1 (van gogh, Drosophila) Vangl1 690366 NM_001109584 0007275 // multicellular organismal development // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1394436_at BF560163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF560163 /DB_XREF=gi:11669893 /DB_XREF=UI-R-E1-fg-b-09-0-UI.r1 /CLONE=UI-R-E1-fg-b-09-0-UI /FEA=EST /CNT=6 /TID=Rn.24982.1 /TIER=ConsEnd /STK=1 /UG=Rn.24982 /UG_TITLE=ESTs, Highly similar to JC5958 sperm surface protein (H.sapiens) BF560163 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0008432 // JUN kinase binding // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from electronic annotation 1394437_at AI407319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407319 /DB_XREF=gi:4250823 /DB_XREF=EST235607 /CLONE=ROVDR13 /FEA=EST /CNT=6 /TID=Rn.80807.1 /TIER=ConsEnd /STK=1 /UG=Rn.80807 /UG_TITLE=ESTs AI407319 1394438_at BI294346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294346 /DB_XREF=gi:14956721 /DB_XREF=UI-R-DK0-ceh-f-08-0-UI.s1 /CLONE=UI-R-DK0-ceh-f-08-0-UI /FEA=EST /CNT=9 /TID=Rn.58311.1 /TIER=ConsEnd /STK=1 /UG=Rn.58311 /UG_TITLE=ESTs, Weakly similar to ACTIN, AORTIC SMOOTH MUSCLE (R.norvegicus) BI294346 ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) Actr1a 294010 NM_001106364 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1394439_at AW523921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523921 /DB_XREF=gi:7166306 /DB_XREF=UI-R-BO0-aie-e-07-0-UI.s1 /CLONE=UI-R-BO0-aie-e-07-0-UI /FEA=EST /CNT=8 /TID=Rn.45745.1 /TIER=ConsEnd /STK=1 /UG=Rn.45745 /UG_TITLE=ESTs AW523921 similar to KIAA0892 protein RGD1308759 290668 NM_001106077 0034088 // maintenance of mitotic sister chromatid cohesion // not recorded 0000785 // chromatin // not recorded /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0032116 // cohesin loading complex // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0047485 // protein N-terminus binding // not recorded 1394440_at BI293863 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293863 /DB_XREF=gi:14955766 /DB_XREF=UI-R-DK0-cdl-g-11-0-UI.s1 /CLONE=UI-R-DK0-cdl-g-11-0-UI /FEA=EST /CNT=7 /TID=Rn.56083.1 /TIER=ConsEnd /STK=1 /UG=Rn.56083 /UG_TITLE=ESTs BI293863 Transportin 1 Tnpo1 309126 XM_001070389 /// XM_219500 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394441_at AW528593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528593 /DB_XREF=gi:7171007 /DB_XREF=UI-R-BO1-ajr-b-06-0-UI.s1 /CLONE=UI-R-BO1-ajr-b-06-0-UI /FEA=EST /CNT=7 /TID=Rn.46932.1 /TIER=ConsEnd /STK=1 /UG=Rn.46932 /UG_TITLE=ESTs AW528593 1394442_at AW526222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526222 /DB_XREF=gi:7168607 /DB_XREF=UI-R-BO1-aju-e-07-0-UI.s1 /CLONE=UI-R-BO1-aju-e-07-0-UI /FEA=EST /CNT=6 /TID=Rn.49271.1 /TIER=ConsEnd /STK=1 /UG=Rn.49271 /UG_TITLE=ESTs, Weakly similar to T00055 hypothetical protein KIAA0417 (H.sapiens) AW526222 Heat shock protein 12B Hspa12b 311427 NM_001107778 1394443_at AW534370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534370 /DB_XREF=gi:7176784 /DB_XREF=UI-R-C4-alo-f-10-0-UI.s1 /CLONE=UI-R-C4-alo-f-10-0-UI /FEA=EST /CNT=6 /TID=Rn.48604.1 /TIER=ConsEnd /STK=1 /UG=Rn.48604 /UG_TITLE=ESTs AW534370 1394444_at BF286450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF286450 /DB_XREF=gi:11217520 /DB_XREF=EST451041 /CLONE=RGIFQ23 /FEA=EST /CNT=6 /TID=Rn.34114.1 /TIER=ConsEnd /STK=1 /UG=Rn.34114 /UG_TITLE=ESTs, Weakly similar to DAD1_HUMAN DEFENDER AGAINST CELL DEATH 1 (R.norvegicus) BF286450 1394445_at AW532385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532385 /DB_XREF=gi:7174799 /DB_XREF=UI-R-BT1-akc-g-10-0-UI.s1 /CLONE=UI-R-BT1-akc-g-10-0-UI /FEA=EST /CNT=6 /TID=Rn.64210.1 /TIER=ConsEnd /STK=1 /UG=Rn.64210 /UG_TITLE=ESTs, Moderately similar to T00083 hypothetical protein KIAA0515 (H.sapiens) AW532385 1394446_at AW523015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523015 /DB_XREF=gi:7165400 /DB_XREF=UI-R-BO0-ahm-c-12-0-UI.s1 /CLONE=UI-R-BO0-ahm-c-12-0-UI /FEA=EST /CNT=6 /TID=Rn.44094.1 /TIER=ConsEnd /STK=1 /UG=Rn.44094 /UG_TITLE=ESTs AW523015 1394447_at BF419701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419701 /DB_XREF=gi:11407690 /DB_XREF=UI-R-CA0-bpf-c-05-0-UI.s1 /CLONE=UI-R-CA0-bpf-c-05-0-UI /FEA=EST /CNT=6 /TID=Rn.48278.1 /TIER=ConsEnd /STK=1 /UG=Rn.48278 /UG_TITLE=ESTs BF419701 1394448_at BG380768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380768 /DB_XREF=gi:13305240 /DB_XREF=UI-R-CT0-bub-b-11-0-UI.s1 /CLONE=UI-R-CT0-bub-b-11-0-UI /FEA=EST /CNT=6 /TID=Rn.26663.1 /TIER=ConsEnd /STK=1 /UG=Rn.26663 /UG_TITLE=ESTs BG380768 1394449_at AW524715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524715 /DB_XREF=gi:7167100 /DB_XREF=UI-R-BO0-aib-e-08-0-UI.s1 /CLONE=UI-R-BO0-aib-e-08-0-UI /FEA=EST /CNT=5 /TID=Rn.48642.1 /TIER=ConsEnd /STK=1 /UG=Rn.48642 /UG_TITLE=ESTs AW524715 1394450_at AI228600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228600 /DB_XREF=gi:4135368 /DB_XREF=EST225295 /CLONE=RBRCX01 /FEA=EST /CNT=5 /TID=Rn.40570.1 /TIER=ConsEnd /STK=1 /UG=Rn.40570 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) AI228600 1394451_at AI236455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236455 /DB_XREF=gi:4136200 /DB_XREF=EST233017 /CLONE=ROVDG30 /FEA=EST /CNT=5 /TID=Rn.63926.1 /TIER=ConsEnd /STK=1 /UG=Rn.63926 /UG_TITLE=ESTs AI236455 annexin A1 Anxa1 25380 NM_012904 0002674 // negative regulation of acute inflammatory response // inferred from direct assay /// 0007049 // cell cycle // not recorded /// 0007165 // signal transduction // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from direct assay /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0010165 // response to X-ray // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0018149 // peptide cross-linking // not recorded /// 0030073 // insulin secretion // inferred from direct assay /// 0030216 // keratinocyte differentiation // not recorded /// 0031018 // endocrine pancreas development // inferred from expression pattern /// 0031340 // positive regulation of vesicle fusion // not recorded /// 0031394 // positive regulation of prostaglandin biosynthetic process // inferred from mutant phenotype /// 0031960 // response to corticosteroid stimulus // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0042063 // gliogenesis // inferred from expression pattern /// 0042127 // regulation of cell proliferation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043066 // negative regulation of apoptosis // inferred from direct assay /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0050482 // arachidonic acid secretion // not recorded /// 0050709 // negative regulation of protein secretion // inferred from mutant phenotype /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0060206 // estrous cycle phase // inferred from expression pattern /// 0070301 // cellular response to hydrogen peroxide // inferred from mutant phenotype /// 0070365 // hepatocyte differentiation // inferred from expression pattern /// 0070555 // response to interleukin-1 // inferred from expression pattern 0001533 // cornified envelope // not recorded /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from direct assay /// 0042383 // sarcolemma // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003727 // single-stranded RNA binding // inferred from direct assay /// 0004859 // phospholipase inhibitor activity // inferred from electronic annotation /// 0005198 // structural molecule activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005543 // phospholipid binding // inferred from direct assay /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // not recorded /// 0005544 // calcium-dependent phospholipid binding // traceable author statement /// 0019834 // phospholipase A2 inhibitor activity // inferred from direct assay /// 0019834 // phospholipase A2 inhibitor activity // inferred from electronic annotation /// 0030674 // protein binding, bridging // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay 1394452_at BM391487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391487 /DB_XREF=gi:18191540 /DB_XREF=UI-R-DY0-ckr-a-14-0-UI.s1 /CLONE=UI-R-DY0-ckr-a-14-0-UI /FEA=EST /CNT=5 /TID=Rn.54898.1 /TIER=ConsEnd /STK=1 /UG=Rn.54898 /UG_TITLE=ESTs BM391487 1394453_at BF389053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389053 /DB_XREF=gi:11373880 /DB_XREF=UI-R-BS2-bdh-c-07-0-UI.s1 /CLONE=UI-R-BS2-bdh-c-07-0-UI /FEA=EST /CNT=5 /TID=Rn.55394.1 /TIER=ConsEnd /STK=1 /UG=Rn.55394 /UG_TITLE=ESTs BF389053 1394454_at BE104533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104533 /DB_XREF=gi:8496633 /DB_XREF=UI-R-BX0-arq-e-03-0-UI.s1 /CLONE=UI-R-BX0-arq-e-03-0-UI /FEA=EST /CNT=5 /TID=Rn.50646.1 /TIER=ConsEnd /STK=1 /UG=Rn.50646 /UG_TITLE=ESTs BE104533 1394455_at BE121160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121160 /DB_XREF=gi:8513265 /DB_XREF=UI-R-CA0-bau-g-03-0-UI.s1 /CLONE=UI-R-CA0-bau-g-03-0-UI /FEA=EST /CNT=5 /TID=Rn.47038.1 /TIER=ConsEnd /STK=1 /UG=Rn.47038 /UG_TITLE=ESTs BE121160 1394456_at AW525722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525722 /DB_XREF=gi:7168107 /DB_XREF=UI-R-BJ0p-air-b-02-0-UI.s1 /CLONE=UI-R-BJ0p-air-b-02-0-UI /FEA=EST /CNT=5 /TID=Rn.41733.1 /TIER=ConsEnd /STK=1 /UG=Rn.41733 /UG_TITLE=ESTs AW525722 1394457_at AW530304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530304 /DB_XREF=gi:7172718 /DB_XREF=UI-R-BU0-amv-a-09-0-UI.s1 /CLONE=UI-R-BU0-amv-a-09-0-UI /FEA=EST /CNT=5 /TID=Rn.28019.1 /TIER=ConsEnd /STK=1 /UG=Rn.28019 /UG_TITLE=ESTs AW530304 1394458_at BF291026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291026 /DB_XREF=gi:11222096 /DB_XREF=EST455617 /CLONE=RGIIH65 /FEA=EST /CNT=5 /TID=Rn.34186.1 /TIER=ConsEnd /STK=1 /UG=Rn.34186 /UG_TITLE=ESTs, Weakly similar to M02B7.2.p (Caenorhabditis elegans) (C.elegans) BF291026 1394459_at AI715738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715738 /DB_XREF=gi:5032991 /DB_XREF=UI-R-Y0-abt-d-10-0-UI.s1 /CLONE=UI-R-Y0-abt-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.41046.1 /TIER=ConsEnd /STK=1 /UG=Rn.41046 /UG_TITLE=ESTs AI715738 family with sequence similarity 120C FAM120C 317423 XM_001068090 /// XM_228876 1394460_at BF564428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564428 /DB_XREF=gi:11674158 /DB_XREF=UI-R-BU0-ams-e-09-0-UI.r1 /CLONE=UI-R-BU0-ams-e-09-0-UI /FEA=EST /CNT=5 /TID=Rn.40664.1 /TIER=ConsEnd /STK=1 /UG=Rn.40664 /UG_TITLE=ESTs BF564428 1394461_at BF409715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409715 /DB_XREF=gi:11397690 /DB_XREF=UI-R-CA1-bln-h-10-0-UI.s1 /CLONE=UI-R-CA1-bln-h-10-0-UI /FEA=EST /CNT=5 /TID=Rn.51971.1 /TIER=ConsEnd /STK=1 /UG=Rn.51971 /UG_TITLE=ESTs BF409715 1394462_at AI716969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716969 /DB_XREF=gi:5034225 /DB_XREF=UI-R-Y0-acl-d-04-0-UI.s1 /CLONE=UI-R-Y0-acl-d-04-0-UI /FEA=EST /CNT=5 /TID=Rn.40889.1 /TIER=ConsEnd /STK=1 /UG=Rn.40889 /UG_TITLE=ESTs, Weakly similar to HUNK_MOUSE HORMONALLY UPREGULATED NEU TUMOR-ASSOCIATED KINASE (SERINETHREONINE PROTEIN KINASE MAK-V) (M.musculus) AI716969 obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF Obscn 338458 XM_001076876 /// XM_340807 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0030017 // sarcomere // inferred from direct assay /// 0030018 // Z disc // inferred from direct assay /// 0031430 // M band // inferred from direct assay 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // non-traceable author statement /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008307 // structural constituent of muscle // inferred from expression pattern /// 0031432 // titin binding // not recorded 1394463_at BE097727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097727 /DB_XREF=gi:8488663 /DB_XREF=UI-R-BO1-aqb-b-02-0-UI.s1 /CLONE=UI-R-BO1-aqb-b-02-0-UI /FEA=EST /CNT=5 /TID=Rn.49676.1 /TIER=ConsEnd /STK=1 /UG=Rn.49676 /UG_TITLE=ESTs BE097727 1394464_at AW528921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528921 /DB_XREF=gi:7171330 /DB_XREF=UI-R-BU0-amx-a-09-0-UI.s1 /CLONE=UI-R-BU0-amx-a-09-0-UI /FEA=EST /CNT=5 /TID=Rn.47043.1 /TIER=ConsEnd /STK=1 /UG=Rn.47043 /UG_TITLE=ESTs AW528921 hypothetical protein LOC690830 LOC690830 690830 XM_001075809 /// XM_002726472 1394465_at BG381387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381387 /DB_XREF=gi:13305859 /DB_XREF=UI-R-CS0-btt-f-09-0-UI.s1 /CLONE=UI-R-CS0-btt-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.55236.1 /TIER=ConsEnd /STK=1 /UG=Rn.55236 /UG_TITLE=ESTs BG381387 1394466_at AI709744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709744 /DB_XREF=gi:4999520 /DB_XREF=UI-R-C3-tj-b-01-0-UI.s1 /CLONE=UI-R-C3-tj-b-01-0-UI /FEA=EST /CNT=5 /TID=Rn.41437.1 /TIER=ConsEnd /STK=1 /UG=Rn.41437 /UG_TITLE=ESTs AI709744 1394467_at AI511367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511367 /DB_XREF=gi:4417066 /DB_XREF=UI-R-C3-sf-d-10-0-UI.s1 /CLONE=UI-R-C3-sf-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.23127.1 /TIER=ConsEnd /STK=1 /UG=Rn.23127 /UG_TITLE=ESTs AI511367 1394468_at BF287020 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287020 /DB_XREF=gi:11218090 /DB_XREF=EST451611 /CLONE=RGIFY04 /FEA=EST /CNT=5 /TID=Rn.55406.1 /TIER=ConsEnd /STK=1 /UG=Rn.55406 /UG_TITLE=ESTs BF287020 1394469_at AI232647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232647 /DB_XREF=gi:3816527 /DB_XREF=EST229335 /CLONE=RKICE67 /FEA=EST /CNT=5 /TID=Rn.34175.1 /TIER=ConsEnd /STK=1 /UG=Rn.34175 /UG_TITLE=ESTs AI232647 1394470_at AI502258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502258 /DB_XREF=gi:4400109 /DB_XREF=UI-R-C1-kg-a-09-0-UI.s1 /CLONE=UI-R-C1-kg-a-09-0-UI /FEA=EST /CNT=5 /TID=Rn.36104.1 /TIER=ConsEnd /STK=1 /UG=Rn.36104 /UG_TITLE=ESTs, Weakly similar to R07G3.8.p (Caenorhabditis elegans) (C.elegans) AI502258 family with sequence similarity 49, member A Fam49a 298890 NM_001106718 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 1394471_at BF291036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291036 /DB_XREF=gi:11222106 /DB_XREF=EST455627 /CLONE=RGIIH77 /FEA=EST /CNT=5 /TID=Rn.56020.1 /TIER=ConsEnd /STK=1 /UG=Rn.56020 /UG_TITLE=ESTs BF291036 1394472_at BF282814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282814 /DB_XREF=gi:11213884 /DB_XREF=EST447405 /CLONE=RGIDT53 /FEA=EST /CNT=5 /TID=Rn.28005.1 /TIER=ConsEnd /STK=1 /UG=Rn.28005 /UG_TITLE=ESTs BF282814 Ral guanine nucleotide dissociation stimulator,-like 1 Rgl1 289080 NM_001105957 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394473_at AI716206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716206 /DB_XREF=gi:5033459 /DB_XREF=UI-R-Y0-abr-a-01-0-UI.s1 /CLONE=UI-R-Y0-abr-a-01-0-UI /FEA=EST /CNT=5 /TID=Rn.38338.1 /TIER=ConsEnd /STK=1 /UG=Rn.38338 /UG_TITLE=ESTs AI716206 ELK3, member of ETS oncogene family Elk3 362871 NM_001108743 0001525 // angiogenesis // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0042060 // wound healing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005739 // mitochondrion // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0032422 // purine-rich negative regulatory element binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1394474_at BF396804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396804 /DB_XREF=gi:11381785 /DB_XREF=UI-R-BS2-bev-c-10-0-UI.s1 /CLONE=UI-R-BS2-bev-c-10-0-UI /FEA=EST /CNT=5 /TID=Rn.47257.1 /TIER=ConsEnd /STK=1 /UG=Rn.47257 /UG_TITLE=ESTs BF396804 1394475_at BE096857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096857 /DB_XREF=gi:8487788 /DB_XREF=UI-R-BO1-app-d-11-0-UI.s1 /CLONE=UI-R-BO1-app-d-11-0-UI /FEA=EST /CNT=5 /TID=Rn.40510.1 /TIER=ConsEnd /STK=1 /UG=Rn.40510 /UG_TITLE=ESTs BE096857 1394476_at AW535213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535213 /DB_XREF=gi:7177672 /DB_XREF=UI-R-C4-alv-a-10-0-UI.s1 /CLONE=UI-R-C4-alv-a-10-0-UI /FEA=EST /CNT=5 /TID=Rn.16733.1 /TIER=ConsEnd /STK=1 /UG=Rn.16733 /UG_TITLE=ESTs AW535213 Zinc finger protein 709 Zfp709 266773 NM_153731 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1394477_at BG380672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380672 /DB_XREF=gi:13305144 /DB_XREF=UI-R-CT0-bua-b-02-0-UI.s1 /CLONE=UI-R-CT0-bua-b-02-0-UI /FEA=EST /CNT=5 /TID=Rn.53605.1 /TIER=ConsEnd /STK=1 /UG=Rn.53605 /UG_TITLE=ESTs BG380672 similar to nucleolar protein with MIF4G domain 1 LOC682058 682058 XM_001059617 0016070 // RNA metabolic process // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1394478_at BF388080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388080 /DB_XREF=gi:11372904 /DB_XREF=UI-R-CA1-bby-a-07-0-UI.s1 /CLONE=UI-R-CA1-bby-a-07-0-UI /FEA=EST /CNT=5 /TID=Rn.62713.1 /TIER=ConsEnd /STK=1 /UG=Rn.62713 /UG_TITLE=ESTs BF388080 1394479_at BI288580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288580 /DB_XREF=gi:14945307 /DB_XREF=UI-R-DK0-cdg-e-08-0-UI.s1 /CLONE=UI-R-DK0-cdg-e-08-0-UI /FEA=EST /CNT=5 /TID=Rn.59736.1 /TIER=ConsEnd /STK=1 /UG=Rn.59736 /UG_TITLE=ESTs BI288580 arylformamidase Afmid 688283 NM_001111366 0008152 // metabolic process // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation 1394480_at BE109548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109548 /DB_XREF=gi:8501653 /DB_XREF=UI-R-BJ1-avp-d-11-0-UI.s1 /CLONE=UI-R-BJ1-avp-d-11-0-UI /FEA=EST /CNT=5 /TID=Rn.35598.1 /TIER=ConsEnd /STK=1 /UG=Rn.35598 /UG_TITLE=ESTs BE109548 hypothetical protein LOC100302372 LOC100302372 100302372 NM_001162897 /// NM_001162898 1394481_at BI273997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI273997 /DB_XREF=gi:14884508 /DB_XREF=UI-R-CW0-bwb-e-01-0-UI.s1 /CLONE=UI-R-CW0-bwb-e-01-0-UI /FEA=EST /CNT=5 /TID=Rn.54183.1 /TIER=ConsEnd /STK=1 /UG=Rn.54183 /UG_TITLE=ESTs BI273997 ubiquitin-conjugating enzyme E2Z Ube2z 303478 NM_001037643 0006915 // apoptosis // inferred from electronic annotation /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1394482_at AI232686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232686 /DB_XREF=gi:3816566 /DB_XREF=EST229374 /CLONE=RKICF15 /FEA=EST /CNT=5 /TID=Rn.56005.1 /TIER=ConsEnd /STK=1 /UG=Rn.56005 /UG_TITLE=ESTs AI232686 1394483_at AW535310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535310 /DB_XREF=gi:7177724 /DB_XREF=UI-R-C4-alv-f-07-0-UI.s1 /CLONE=UI-R-C4-alv-f-07-0-UI /FEA=EST /CNT=5 /TID=Rn.48471.1 /TIER=ConsEnd /STK=1 /UG=Rn.48471 /UG_TITLE=ESTs AW535310 1394484_at AI170114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170114 /DB_XREF=gi:3710154 /DB_XREF=EST216036 /CLONE=RLUCC57 /FEA=EST /CNT=5 /TID=Rn.55253.1 /TIER=ConsEnd /STK=1 /UG=Rn.55253 /UG_TITLE=ESTs AI170114 1394485_at AW532781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532781 /DB_XREF=gi:7175195 /DB_XREF=UI-R-BU0-ams-b-07-0-UI.s1 /CLONE=UI-R-BU0-ams-b-07-0-UI /FEA=EST /CNT=8 /TID=Rn.34061.1 /TIER=ConsEnd /STK=1 /UG=Rn.34061 /UG_TITLE=ESTs AW532781 1394486_at BE116701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116701 /DB_XREF=gi:8508806 /DB_XREF=UI-R-BS1-aye-c-10-0-UI.s1 /CLONE=UI-R-BS1-aye-c-10-0-UI /FEA=EST /CNT=6 /TID=Rn.26858.1 /TIER=ConsEnd /STK=1 /UG=Rn.26858 /UG_TITLE=ESTs, Weakly similar to RB8B RAT RAS-RELATED PROTEIN RAB-8B (R.norvegicus) BE116701 RAB43, member RAS oncogene family Rab43 500249 NM_001024331 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1394487_at AW526344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526344 /DB_XREF=gi:7168729 /DB_XREF=UI-R-BO1-ajb-a-12-0-UI.s1 /CLONE=UI-R-BO1-ajb-a-12-0-UI /FEA=EST /CNT=6 /TID=Rn.29945.1 /TIER=ConsEnd /STK=1 /UG=Rn.29945 /UG_TITLE=ESTs AW526344 1394488_at AW524157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524157 /DB_XREF=gi:7166542 /DB_XREF=UI-R-BO0-aii-b-06-0-UI.s1 /CLONE=UI-R-BO0-aii-b-06-0-UI /FEA=EST /CNT=5 /TID=Rn.45790.1 /TIER=ConsEnd /STK=1 /UG=Rn.45790 /UG_TITLE=ESTs AW524157 1394489_at BF289978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289978 /DB_XREF=gi:11221048 /DB_XREF=EST454569 /CLONE=RGIHM23 /FEA=EST /CNT=5 /TID=Rn.43414.1 /TIER=ConsEnd /STK=1 /UG=Rn.43414 /UG_TITLE=ESTs BF289978 1394490_at AI502114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502114 /DB_XREF=gi:4399971 /DB_XREF=UI-R-C2p-rx-d-02-0-UI.s2 /CLONE=UI-R-C2p-rx-d-02-0-UI /FEA=EST /CNT=5 /TID=Rn.35619.1 /TIER=ConsEnd /STK=1 /UG=Rn.35619 /UG_TITLE=ESTs, Highly similar to ABC1 MOUSE ATP-BINDING CASSETTE, SUB-FAMILY A, MEMBER 1 (M.musculus) AI502114 1394491_at BI301512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301512 /DB_XREF=gi:14977792 /DB_XREF=UI-R-DN0-cit-e-22-0-UI.s1 /CLONE=UI-R-DN0-cit-e-22-0-UI /FEA=EST /CNT=5 /TID=Rn.58854.1 /TIER=ConsEnd /STK=1 /UG=Rn.58854 /UG_TITLE=ESTs BI301512 1394492_at AW525164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525164 /DB_XREF=gi:7167549 /DB_XREF=UI-R-BJ0p-aio-e-06-0-UI.s1 /CLONE=UI-R-BJ0p-aio-e-06-0-UI /FEA=EST /CNT=5 /TID=Rn.64119.1 /TIER=ConsEnd /STK=1 /UG=Rn.64119 /UG_TITLE=ESTs AW525164 similar to hypothetical protein FLJ38663 RGD1563482 498179 NM_001109065 0006415 // translational termination // inferred from electronic annotation 0003747 // translation release factor activity // inferred from electronic annotation 1394493_at AW524359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524359 /DB_XREF=gi:7166744 /DB_XREF=UI-R-BO0-ahj-d-07-0-UI.s1 /CLONE=UI-R-BO0-ahj-d-07-0-UI /FEA=EST /CNT=5 /TID=Rn.64238.1 /TIER=ConsEnd /STK=1 /UG=Rn.64238 /UG_TITLE=ESTs AW524359 1394494_at AA963519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963519 /DB_XREF=gi:4278422 /DB_XREF=UI-R-E1-gi-h-09-0-UI.s1 /CLONE=UI-R-E1-gi-h-09-0-UI /FEA=EST /CNT=5 /TID=Rn.39303.1 /TIER=ConsEnd /STK=1 /UG=Rn.39303 /UG_TITLE=ESTs, Weakly similar to I38402 guanine nucleotide regulatory protein (H.sapiens) AA963519 Rho guanine nucleotide exchange factor (GEF) 19 Arhgef19 362648 NM_001108692 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1394495_at AW522740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522740 /DB_XREF=gi:7165090 /DB_XREF=UI-R-BO0-ahl-h-01-0-UI.s1 /CLONE=UI-R-BO0-ahl-h-01-0-UI /FEA=EST /CNT=5 /TID=Rn.45461.1 /TIER=ConsEnd /STK=1 /UG=Rn.45461 /UG_TITLE=ESTs AW522740 Hypothetical protein LOC681005 LOC681005 681005 XM_001059887 1394496_at AI408614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408614 /DB_XREF=gi:4252118 /DB_XREF=EST236904 /CLONE=ROVEJ78 /FEA=EST /CNT=5 /TID=Rn.54153.1 /TIER=ConsEnd /STK=1 /UG=Rn.54153 /UG_TITLE=ESTs AI408614 1394497_at AI535239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535239 /DB_XREF=gi:4449374 /DB_XREF=UI-R-C3-st-c-08-0-UI.s1 /CLONE=UI-R-C3-st-c-08-0-UI /FEA=EST /CNT=5 /TID=Rn.40915.1 /TIER=ConsEnd /STK=1 /UG=Rn.40915 /UG_TITLE=ESTs, Moderately similar to LEF1 RAT LYMPHOID ENHANCER BINDING FACTOR 1 (R.norvegicus) AI535239 transcription factor 7-like 2 (T-cell specific, HMG-box) Tcf7l2 679869 NM_001191052 /// XM_001054844 /// XM_001072143 /// XM_001072429 /// XM_001072472 /// XM_001072554 /// XM_002725792 /// XM_002725793 0001568 // blood vessel development // not recorded /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0008283 // cell proliferation // not recorded /// 0009749 // response to glucose stimulus // not recorded /// 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0010909 // positive regulation of heparan sulfate proteoglycan biosynthetic process // not recorded /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0021915 // neural tube development // not recorded /// 0030538 // embryonic genitalia morphogenesis // not recorded /// 0032024 // positive regulation of insulin secretion // not recorded /// 0032092 // positive regulation of protein binding // not recorded /// 0032350 // regulation of hormone metabolic process // not recorded /// 0035019 // somatic stem cell maintenance // not recorded /// 0042593 // glucose homeostasis // not recorded /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0043570 // maintenance of DNA repeat elements // not recorded /// 0045444 // fat cell differentiation // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046827 // positive regulation of protein export from nucleus // not recorded /// 0048557 // embryonic digestive tract morphogenesis // not recorded /// 0048619 // embryonic hindgut morphogenesis // not recorded /// 0048625 // myoblast cell fate commitment // not recorded /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // not recorded /// 0005829 // cytosol // not recorded /// 0032993 // protein-DNA complex // not recorded /// 0070369 // beta-catenin-TCF7L2 complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008013 // beta-catenin binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0019901 // protein kinase binding // not recorded /// 0035257 // nuclear hormone receptor binding // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0045295 // gamma-catenin binding // not recorded 1394498_at BF405506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405506 /DB_XREF=gi:11393481 /DB_XREF=UI-R-CA1-biu-c-08-0-UI.s1 /CLONE=UI-R-CA1-biu-c-08-0-UI /FEA=EST /CNT=5 /TID=Rn.63790.1 /TIER=ConsEnd /STK=1 /UG=Rn.63790 /UG_TITLE=ESTs, Weakly similar to F53F8.5.p (Caenorhabditis elegans) (C.elegans) BF405506 similar to CG16812-PA RGD1307554 292739 NM_001109664 1394499_at AI501768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501768 /DB_XREF=gi:4399619 /DB_XREF=UI-R-C2p-se-h-08-0-UI.s1 /CLONE=UI-R-C2p-se-h-08-0-UI /FEA=EST /CNT=5 /TID=Rn.35557.1 /TIER=ConsEnd /STK=1 /UG=Rn.35557 /UG_TITLE=ESTs AI501768 TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor Taf8 316216 NM_001108197 0001833 // inner cell mass cell proliferation // not recorded /// 0045598 // regulation of fat cell differentiation // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0051457 // maintenance of protein location in nucleus // not recorded 0005634 // nucleus // not recorded /// 0005669 // transcription factor TFIID complex // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // not recorded 1394500_at BI288738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288738 /DB_XREF=gi:14945612 /DB_XREF=UI-R-DK0-cde-d-04-0-UI.s1 /CLONE=UI-R-DK0-cde-d-04-0-UI /FEA=EST /CNT=4 /TID=Rn.54352.1 /TIER=ConsEnd /STK=1 /UG=Rn.54352 /UG_TITLE=ESTs, Weakly similar to SYC_HUMAN CYSTEINYL-TRNA SYNTHETASE (H.sapiens) BI288738 similar to hypothetical protein FLJ12118 RGD1311612 361184 NM_001177684 /// XM_001076059 /// XM_002728438 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006423 // cysteinyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004817 // cysteine-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1394501_at BM390379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390379 /DB_XREF=gi:18190432 /DB_XREF=UI-R-CN1-cjq-f-23-0-UI.s1 /CLONE=UI-R-CN1-cjq-f-23-0-UI /FEA=EST /CNT=4 /TID=Rn.29166.1 /TIER=ConsEnd /STK=1 /UG=Rn.29166 /UG_TITLE=ESTs BM390379 sialic acid binding Ig-like lectin 10 Siglec10 292844 NM_001106250 0005529 // sugar binding // inferred from electronic annotation 1394502_at BF284587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284587 /DB_XREF=gi:11215657 /DB_XREF=EST449178 /CLONE=RGIES54 /FEA=EST /CNT=4 /TID=Rn.28802.1 /TIER=ConsEnd /STK=1 /UG=Rn.28802 /UG_TITLE=ESTs BF284587 rCG43335-like LOC100362321 100362321 XM_002728416 1394503_at AI171987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171987 /DB_XREF=gi:3712027 /DB_XREF=EST217981 /CLONE=RMUBT50 /FEA=EST /CNT=4 /TID=Rn.55282.1 /TIER=ConsEnd /STK=1 /UG=Rn.55282 /UG_TITLE=ESTs AI171987 1394504_at BE103949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103949 /DB_XREF=gi:8496049 /DB_XREF=UI-R-BX0-arj-g-11-0-UI.s1 /CLONE=UI-R-BX0-arj-g-11-0-UI /FEA=EST /CNT=4 /TID=Rn.49282.1 /TIER=ConsEnd /STK=1 /UG=Rn.49282 /UG_TITLE=ESTs BE103949 1394505_at AI228568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228568 /DB_XREF=gi:3812455 /DB_XREF=EST225263 /CLONE=RBRCW57 /FEA=EST /CNT=4 /TID=Rn.55337.1 /TIER=ConsEnd /STK=1 /UG=Rn.55337 /UG_TITLE=ESTs AI228568 1394506_at AI549348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549348 /DB_XREF=gi:4466836 /DB_XREF=UI-R-C3-ty-f-07-0-UI.s1 /CLONE=UI-R-C3-ty-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.41931.1 /TIER=ConsEnd /STK=1 /UG=Rn.41931 /UG_TITLE=ESTs AI549348 1394507_at AI103591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103591 /DB_XREF=gi:3708120 /DB_XREF=EST212880 /CLONE=REMCD84 /FEA=EST /CNT=4 /TID=Rn.55411.1 /TIER=ConsEnd /STK=1 /UG=Rn.55411 /UG_TITLE=ESTs AI103591 1394508_at AW523707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523707 /DB_XREF=gi:7166092 /DB_XREF=UI-R-BO0-aih-c-02-0-UI.s1 /CLONE=UI-R-BO0-aih-c-02-0-UI /FEA=EST /CNT=4 /TID=Rn.64124.1 /TIER=ConsEnd /STK=1 /UG=Rn.64124 /UG_TITLE=ESTs AW523707 Zinc fingers and homeoboxes 3 Zhx3 311604 NM_001047097 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1394509_at BE114001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114001 /DB_XREF=gi:8506106 /DB_XREF=UI-R-BJ1-awi-h-06-0-UI.s1 /CLONE=UI-R-BJ1-awi-h-06-0-UI /FEA=EST /CNT=4 /TID=Rn.49164.1 /TIER=ConsEnd /STK=1 /UG=Rn.49164 /UG_TITLE=ESTs BE114001 1394510_at BF290684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290684 /DB_XREF=gi:11221754 /DB_XREF=EST455275 /CLONE=RGIHX88 /FEA=EST /CNT=4 /TID=Rn.56130.1 /TIER=ConsEnd /STK=1 /UG=Rn.56130 /UG_TITLE=ESTs BF290684 1394511_at BF419160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419160 /DB_XREF=gi:11407190 /DB_XREF=UI-R-BJ2-bqo-g-08-0-UI.s1 /CLONE=UI-R-BJ2-bqo-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.63856.1 /TIER=ConsEnd /STK=1 /UG=Rn.63856 /UG_TITLE=ESTs BF419160 myb-like, SWIRM and MPN domains 1 Mysm1 298247 XM_001058020 /// XM_216460 0016578 // histone deubiquitination // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016585 // chromatin remodeling complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0008237 // metallopeptidase activity // not recorded /// 0042393 // histone binding // not recorded 1394512_at BF289965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289965 /DB_XREF=gi:11221035 /DB_XREF=EST454556 /CLONE=RGIHM04 /FEA=EST /CNT=4 /TID=Rn.55853.1 /TIER=ConsEnd /STK=1 /UG=Rn.55853 /UG_TITLE=ESTs BF289965 1394513_at AI171597 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171597 /DB_XREF=gi:3711637 /DB_XREF=EST217564 /CLONE=RMUBN03 /FEA=EST /CNT=4 /TID=Rn.29489.1 /TIER=ConsEnd /STK=1 /UG=Rn.29489 /UG_TITLE=ESTs AI171597 coiled-coil domain containing 43 Ccdc43 360637 NM_001100728 1394514_at AI709573 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709573 /DB_XREF=gi:4999349 /DB_XREF=UI-R-C3-tn-h-03-0-UI.s1 /CLONE=UI-R-C3-tn-h-03-0-UI /FEA=EST /CNT=4 /TID=Rn.40949.1 /TIER=ConsEnd /STK=1 /UG=Rn.40949 /UG_TITLE=ESTs AI709573 glucocorticoid modulatory element binding protein 2 Gmeb2 83635 NM_031803 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1394515_at BF287046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287046 /DB_XREF=gi:11218116 /DB_XREF=EST451637 /CLONE=RGIFY31 /FEA=EST /CNT=4 /TID=Rn.28216.1 /TIER=ConsEnd /STK=1 /UG=Rn.28216 /UG_TITLE=ESTs BF287046 1394516_at AA800583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800583 /DB_XREF=gi:4131511 /DB_XREF=EST190080 /CLONE=RLUAB49 /FEA=EST /CNT=4 /TID=Rn.31749.1 /TIER=ConsEnd /STK=1 /UG=Rn.31749 /UG_TITLE=ESTs AA800583 1394517_at AW522148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522148 /DB_XREF=gi:7164533 /DB_XREF=UI-R-BO0-agm-a-10-0-UI.s1 /CLONE=UI-R-BO0-agm-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.48626.1 /TIER=ConsEnd /STK=1 /UG=Rn.48626 /UG_TITLE=ESTs AW522148 1394518_at BF284436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284436 /DB_XREF=gi:11215506 /DB_XREF=EST449027 /CLONE=RGIEQ07 /FEA=EST /CNT=4 /TID=Rn.55267.1 /TIER=ConsEnd /STK=1 /UG=Rn.55267 /UG_TITLE=ESTs, Weakly similar to ATS1_RAT ADAM-TS 1 PRECURSOR (A DISINTEGRIN AND METALLOPROTEINASE WITH THROMBOSPONDIN MOTIFS 1) (ADAMTS-1) (ADAM-TS1) (R.norvegicus) BF284436 A disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 9 Adamts9 312566 NM_001107877 0006508 // proteolysis // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1394519_at AI170569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170569 /DB_XREF=gi:4134517 /DB_XREF=EST216502 /CLONE=RMUAY06 /FEA=EST /CNT=4 /TID=Rn.28425.1 /TIER=ConsEnd /STK=1 /UG=Rn.28425 /UG_TITLE=ESTs AI170569 1394520_at AW143476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143476 /DB_XREF=gi:6163479 /DB_XREF=EST293876 /CLONE=RGIBV62 /FEA=EST /CNT=4 /TID=Rn.62563.1 /TIER=ConsEnd /STK=1 /UG=Rn.62563 /UG_TITLE=ESTs AW143476 1394521_at AI599567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599567 /DB_XREF=gi:4608615 /DB_XREF=EST251270 /CLONE=REMEP32 /FEA=EST /CNT=4 /TID=Rn.40521.1 /TIER=ConsEnd /STK=1 /UG=Rn.40521 /UG_TITLE=ESTs AI599567 1394522_at AW527950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527950 /DB_XREF=gi:7170364 /DB_XREF=UI-R-BT1-akg-a-06-0-UI.s1 /CLONE=UI-R-BT1-akg-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.46718.1 /TIER=ConsEnd /STK=1 /UG=Rn.46718 /UG_TITLE=ESTs AW527950 1394523_at BF289003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289003 /DB_XREF=gi:11220073 /DB_XREF=EST453594 /CLONE=RGIHA12 /FEA=EST /CNT=4 /TID=Rn.55691.1 /TIER=ConsEnd /STK=1 /UG=Rn.55691 /UG_TITLE=ESTs BF289003 Phospholipase B domain containing 1 Plbd1 297694 NM_001013927 0016042 // lipid catabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation 1394524_at AW921279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921279 /DB_XREF=gi:8087103 /DB_XREF=EST352583 /CLONE=RGIHQ46 /FEA=EST /CNT=4 /TID=Rn.49286.1 /TIER=ConsEnd /STK=1 /UG=Rn.49286 /UG_TITLE=ESTs AW921279 hypothetical protein LOC688495 LOC688495 688495 NM_001135252 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1394525_at BM385125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385125 /DB_XREF=gi:18185178 /DB_XREF=UI-R-CN1-cjm-d-24-0-UI.s2 /CLONE=UI-R-CN1-cjm-d-24-0-UI /FEA=EST /CNT=4 /TID=Rn.65706.1 /TIER=ConsEnd /STK=1 /UG=Rn.65706 /UG_TITLE=ESTs BM385125 1394526_at AI236935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236935 /DB_XREF=gi:3830441 /DB_XREF=EST233497 /CLONE=ROVDM54 /FEA=EST /CNT=4 /TID=Rn.34271.1 /TIER=ConsEnd /STK=1 /UG=Rn.34271 /UG_TITLE=ESTs AI236935 1394527_at AI501679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501679 /DB_XREF=gi:4399530 /DB_XREF=UI-R-C0-iu-f-04-0-UI.s1 /CLONE=UI-R-C0-iu-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.36008.1 /TIER=ConsEnd /STK=1 /UG=Rn.36008 /UG_TITLE=ESTs AI501679 1394528_at BF405166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405166 /DB_XREF=gi:11393141 /DB_XREF=UI-R-CA1-biq-f-02-0-UI.s1 /CLONE=UI-R-CA1-biq-f-02-0-UI /FEA=EST /CNT=4 /TID=Rn.55722.1 /TIER=ConsEnd /STK=1 /UG=Rn.55722 /UG_TITLE=ESTs BF405166 1394529_at BE102606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102606 /DB_XREF=gi:8494705 /DB_XREF=UI-R-BT1-aqs-a-01-0-UI.s1 /CLONE=UI-R-BT1-aqs-a-01-0-UI /FEA=EST /CNT=4 /TID=Rn.50331.1 /TIER=ConsEnd /STK=1 /UG=Rn.50331 /UG_TITLE=ESTs BE102606 Eukaryotic translation initiation factor 4E Eif4e 117045 NM_053974 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // traceable author statement /// 0006413 // translational initiation // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005845 // mRNA cap binding complex // not recorded /// 0005845 // mRNA cap binding complex // inferred from sequence or structural similarity /// 0016281 // eukaryotic translation initiation factor 4F complex // inferred from direct assay /// 0016281 // eukaryotic translation initiation factor 4F complex // inferred from mutant phenotype /// 0043234 // protein complex // inferred from direct assay /// 0043234 // protein complex // inferred from mutant phenotype 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // translation initiation factor activity // traceable author statement /// 0005515 // protein binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0031370 // eukaryotic initiation factor 4G binding // inferred from mutant phenotype /// 0031370 // eukaryotic initiation factor 4G binding // inferred from physical interaction 1394530_at AW535733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535733 /DB_XREF=gi:7178147 /DB_XREF=UI-R-BS0-aod-d-06-0-UI.s1 /CLONE=UI-R-BS0-aod-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.48554.1 /TIER=ConsEnd /STK=1 /UG=Rn.48554 /UG_TITLE=ESTs AW535733 1394531_at AW526150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526150 /DB_XREF=gi:7168535 /DB_XREF=UI-R-BO1-aiz-g-04-0-UI.s1 /CLONE=UI-R-BO1-aiz-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.46100.1 /TIER=ConsEnd /STK=1 /UG=Rn.46100 /UG_TITLE=ESTs AW526150 1394532_at BE107163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107163 /DB_XREF=gi:8499268 /DB_XREF=UI-R-BS1-ayq-e-11-0-UI.s1 /CLONE=UI-R-BS1-ayq-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.40361.1 /TIER=ConsEnd /STK=1 /UG=Rn.40361 /UG_TITLE=ESTs BE107163 1394533_at BI291166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291166 /DB_XREF=gi:14950452 /DB_XREF=UI-R-DK0-cgh-d-06-0-UI.s1 /CLONE=UI-R-DK0-cgh-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.79234.1 /TIER=ConsEnd /STK=1 /UG=Rn.79234 /UG_TITLE=ESTs BI291166 1394534_at AW532329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532329 /DB_XREF=gi:7174743 /DB_XREF=UI-R-BT1-akc-b-12-0-UI.s1 /CLONE=UI-R-BT1-akc-b-12-0-UI /FEA=EST /CNT=4 /TID=Rn.64209.1 /TIER=ConsEnd /STK=1 /UG=Rn.64209 /UG_TITLE=ESTs AW532329 1394535_at BF397930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397930 /DB_XREF=gi:11382915 /DB_XREF=UI-R-BS2-bef-c-11-0-UI.s1 /CLONE=UI-R-BS2-bef-c-11-0-UI /FEA=EST /CNT=4 /TID=Rn.63949.1 /TIER=ConsEnd /STK=1 /UG=Rn.63949 /UG_TITLE=ESTs BF397930 kinesin family member 16B Kif16b 311478 NM_001107783 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1394536_at AI408662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408662 /DB_XREF=gi:4252166 /DB_XREF=EST236952 /CLONE=ROVEK83 /FEA=EST /CNT=4 /TID=Rn.65179.1 /TIER=ConsEnd /STK=1 /UG=Rn.65179 /UG_TITLE=ESTs, Moderately similar to I58376 hypothetical protein unp - mouse (M.musculus) AI408662 ubiquitin specific peptidase 4 (proto-oncogene) Usp4 290864 NM_001106093 /// NM_001135012 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0016579 // protein deubiquitination // not recorded /// 0016579 // protein deubiquitination // inferred from sequence or structural similarity /// 0031397 // negative regulation of protein ubiquitination // not recorded /// 0031397 // negative regulation of protein ubiquitination // inferred from sequence or structural similarity /// 0031647 // regulation of protein stability // not recorded /// 0031647 // regulation of protein stability // inferred from sequence or structural similarity /// 0034394 // protein localization at cell surface // not recorded /// 0034394 // protein localization at cell surface // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0004221 // ubiquitin thiolesterase activity // inferred from sequence or structural similarity /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0004843 // ubiquitin-specific protease activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0031685 // adenosine receptor binding // not recorded 1394537_at AI178429 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178429 /DB_XREF=gi:3729067 /DB_XREF=EST222102 /CLONE=RPLCQ85 /FEA=EST /CNT=4 /TID=Rn.38163.1 /TIER=ConsEnd /STK=1 /UG=Rn.38163 /UG_TITLE=ESTs, Weakly similar to LMO6_HUMAN LIM-ONLY PROTEIN 6 (H.sapiens) AI178429 prickle homolog 3 (Drosophila) Prickle3 317380 NM_001014110 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1394538_at BF404879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404879 /DB_XREF=gi:11392854 /DB_XREF=UI-R-CA1-bic-g-04-0-UI.s1 /CLONE=UI-R-CA1-bic-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.66775.1 /TIER=ConsEnd /STK=1 /UG=Rn.66775 /UG_TITLE=ESTs BF404879 1394539_at BF413362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413362 /DB_XREF=gi:11401351 /DB_XREF=UI-R-CA0-boe-b-12-0-UI.s1 /CLONE=UI-R-CA0-boe-b-12-0-UI /FEA=EST /CNT=4 /TID=Rn.62317.1 /TIER=ConsEnd /STK=1 /UG=Rn.62317 /UG_TITLE=ESTs BF413362 1394540_at BF387197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387197 /DB_XREF=gi:11372021 /DB_XREF=UI-R-CA1-bbq-f-10-0-UI.s1 /CLONE=UI-R-CA1-bbq-f-10-0-UI /FEA=EST /CNT=4 /TID=Rn.62750.1 /TIER=ConsEnd /STK=1 /UG=Rn.62750 /UG_TITLE=ESTs BF387197 1394541_at BM387754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387754 /DB_XREF=gi:18187807 /DB_XREF=UI-R-CN1-cjk-a-18-0-UI.s1 /CLONE=UI-R-CN1-cjk-a-18-0-UI /FEA=EST /CNT=4 /TID=Rn.81241.1 /TIER=ConsEnd /STK=1 /UG=Rn.81241 /UG_TITLE=ESTs BM387754 1394542_at AW919060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919060 /DB_XREF=gi:8084849 /DB_XREF=EST350364 /CLONE=RGIFC28 /FEA=EST /CNT=4 /TID=Rn.28293.1 /TIER=ConsEnd /STK=1 /UG=Rn.28293 /UG_TITLE=ESTs AW919060 1394543_at BF400104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400104 /DB_XREF=gi:11385115 /DB_XREF=UI-R-CA1-bjc-k-17-0-UI.s1 /CLONE=UI-R-CA1-bjc-k-17-0-UI /FEA=EST /CNT=4 /TID=Rn.57770.1 /TIER=ConsEnd /STK=1 /UG=Rn.57770 /UG_TITLE=ESTs, Weakly similar to BRCA1-associated RING domain protein 1 (Rattus norvegicus) (R.norvegicus) BF400104 ankyrin repeat and sterile alpha motif domain containing 1B Anks1b 314721 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0015030 // Cajal body // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 1394544_at AI500969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI500969 /DB_XREF=gi:4398820 /DB_XREF=UI-R-C2p-rv-d-08-0-UI.s1 /CLONE=UI-R-C2p-rv-d-08-0-UI /FEA=EST /CNT=4 /TID=Rn.35228.2 /TIER=ConsEnd /STK=1 /UG=Rn.35228 /UG_TITLE=ESTs AI500969 1394545_at AA998459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998459 /DB_XREF=gi:4290007 /DB_XREF=UI-R-C0-ib-g-08-0-UI.s1 /CLONE=UI-R-C0-ib-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.46963.1 /TIER=ConsEnd /STK=1 /UG=Rn.46963 /UG_TITLE=ESTs AA998459 spire homolog 2 (Drosophila) Spire2 307925 NM_001127538 0008270 // zinc ion binding // inferred from electronic annotation 1394546_at AI556229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556229 /DB_XREF=gi:4488592 /DB_XREF=UI-R-C2p-rb-f-08-0-UI.s1 /CLONE=UI-R-C2p-rb-f-08-0-UI /FEA=EST /CNT=4 /TID=Rn.65925.1 /TIER=ConsEnd /STK=1 /UG=Rn.65925 /UG_TITLE=ESTs AI556229 1394547_at AW143604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143604 /DB_XREF=gi:6163503 /DB_XREF=EST293900 /CLONE=RGIBW34 /FEA=EST /CNT=4 /TID=Rn.28208.1 /TIER=ConsEnd /STK=1 /UG=Rn.28208 /UG_TITLE=ESTs AW143604 1394548_at BF282781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282781 /DB_XREF=gi:11213851 /DB_XREF=EST447372 /CLONE=RGIDT02 /FEA=EST /CNT=4 /TID=Rn.51482.1 /TIER=ConsEnd /STK=1 /UG=Rn.51482 /UG_TITLE=ESTs, Weakly similar to CARBOXYPEPTIDASE H PRECURSOR (R.norvegicus) BF282781 carboxypeptidase M Cpm 314855 NM_001108098 0006508 // proteolysis // inferred from electronic annotation 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1394549_at AI501695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501695 /DB_XREF=gi:4399546 /DB_XREF=UI-R-C0-iw-g-06-0-UI.s1 /CLONE=UI-R-C0-iw-g-06-0-UI /FEA=EST /CNT=4 /TID=Rn.35541.1 /TIER=ConsEnd /STK=1 /UG=Rn.35541 /UG_TITLE=ESTs AI501695 1394550_at AA964902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964902 /DB_XREF=gi:4279776 /DB_XREF=UI-R-C0-hb-e-11-0-UI.s1 /CLONE=UI-R-C0-hb-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.43942.1 /TIER=ConsEnd /STK=1 /UG=Rn.43942 /UG_TITLE=ESTs AA964902 similar to CG1998-PA LOC691221 691221 XM_001077260 /// XM_002724607 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1394551_at AW144120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144120 /DB_XREF=gi:6164019 /DB_XREF=EST294416 /CLONE=RGICI49 /FEA=EST /CNT=4 /TID=Rn.40400.1 /TIER=ConsEnd /STK=1 /UG=Rn.40400 /UG_TITLE=ESTs AW144120 Carbonic anhydrase 3 Car3 54232 NM_019292 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation 0004089 // carbonate dehydratase activity // traceable author statement /// 0004089 // carbonate dehydratase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016151 // nickel ion binding // inferred from electronic annotation /// 0016151 // nickel ion binding // not recorded /// 0016829 // lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1394552_at BF287082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287082 /DB_XREF=gi:11218152 /DB_XREF=EST451673 /CLONE=RGIFY85 /FEA=EST /CNT=4 /TID=Rn.28237.1 /TIER=ConsEnd /STK=1 /UG=Rn.28237 /UG_TITLE=ESTs BF287082 1394553_at AI007661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI007661 /DB_XREF=gi:3221493 /DB_XREF=EST202112 /CLONE=RBRAS82 /FEA=EST /CNT=4 /TID=Rn.55310.1 /TIER=ConsEnd /STK=1 /UG=Rn.55310 /UG_TITLE=ESTs AI007661 1394554_at BF564500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564500 /DB_XREF=gi:11674230 /DB_XREF=UI-R-BU0-amu-f-09-0-UI.r1 /CLONE=UI-R-BU0-amu-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.45003.1 /TIER=ConsEnd /STK=1 /UG=Rn.45003 /UG_TITLE=ESTs BF564500 1394555_at AI501080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501080 /DB_XREF=gi:4398931 /DB_XREF=UI-R-C2p-rw-b-03-0-UI.s1 /CLONE=UI-R-C2p-rw-b-03-0-UI /FEA=EST /CNT=4 /TID=Rn.36679.1 /TIER=ConsEnd /STK=1 /UG=Rn.36679 /UG_TITLE=ESTs AI501080 1394556_at BF404184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404184 /DB_XREF=gi:11392159 /DB_XREF=UI-R-CA1-biw-c-14-0-UI.s1 /CLONE=UI-R-CA1-biw-c-14-0-UI /FEA=EST /CNT=4 /TID=Rn.33871.1 /TIER=ConsEnd /STK=1 /UG=Rn.33871 /UG_TITLE=ESTs BF404184 1394557_at AW535242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535242 /DB_XREF=gi:7177617 /DB_XREF=UI-R-C4-alu-d-08-0-UI.s1 /CLONE=UI-R-C4-alu-d-08-0-UI /FEA=EST /CNT=4 /TID=Rn.48448.1 /TIER=ConsEnd /STK=1 /UG=Rn.48448 /UG_TITLE=ESTs AW535242 1394558_at BF391665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391665 /DB_XREF=gi:11376519 /DB_XREF=UI-R-CA1-bct-a-08-0-UI.s1 /CLONE=UI-R-CA1-bct-a-08-0-UI /FEA=EST /CNT=4 /TID=Rn.52385.1 /TIER=ConsEnd /STK=1 /UG=Rn.52385 /UG_TITLE=ESTs BF391665 1394559_at BF282205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282205 /DB_XREF=gi:11213275 /DB_XREF=EST446796 /CLONE=RGIDF62 /FEA=EST /CNT=4 /TID=Rn.43372.1 /TIER=ConsEnd /STK=1 /UG=Rn.43372 /UG_TITLE=ESTs BF282205 1394560_at AW919434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919434 /DB_XREF=gi:8085229 /DB_XREF=EST350738 /CLONE=RGIFX11 /FEA=EST /CNT=4 /TID=Rn.27945.1 /TIER=ConsEnd /STK=1 /UG=Rn.27945 /UG_TITLE=ESTs AW919434 1394561_at BE103324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103324 /DB_XREF=gi:8495423 /DB_XREF=UI-R-BX0-aqz-d-01-0-UI.s1 /CLONE=UI-R-BX0-aqz-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.37593.1 /TIER=ConsEnd /STK=1 /UG=Rn.37593 /UG_TITLE=ESTs, Weakly similar to LKRT2 proteoglycan link protein 2 precursor - rat (R.norvegicus) BE103324 hyaluronan and proteoglycan link protein 3 Hapln3 308773 NM_001008559 0007155 // cell adhesion // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // inferred from electronic annotation 1394562_at AW530585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530585 /DB_XREF=gi:7172999 /DB_XREF=UI-R-C4-ala-a-02-0-UI.s1 /CLONE=UI-R-C4-ala-a-02-0-UI /FEA=EST /CNT=4 /TID=Rn.44881.1 /TIER=ConsEnd /STK=1 /UG=Rn.44881 /UG_TITLE=ESTs AW530585 1394563_at AI230657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230657 /DB_XREF=gi:3814544 /DB_XREF=EST227352 /CLONE=REMCZ58 /FEA=EST /CNT=4 /TID=Rn.55422.1 /TIER=ConsEnd /STK=1 /UG=Rn.55422 /UG_TITLE=ESTs AI230657 1394564_at BE106791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106791 /DB_XREF=gi:8498893 /DB_XREF=UI-R-BT1-ast-c-01-0-UI.s1 /CLONE=UI-R-BT1-ast-c-01-0-UI /FEA=EST /CNT=4 /TID=Rn.53883.1 /TIER=ConsEnd /STK=1 /UG=Rn.53883 /UG_TITLE=ESTs BE106791 1394565_at BF406339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406339 /DB_XREF=gi:11394314 /DB_XREF=UI-R-CA1-bjf-n-07-0-UI.s1 /CLONE=UI-R-CA1-bjf-n-07-0-UI /FEA=EST /CNT=4 /TID=Rn.65427.1 /TIER=ConsEnd /STK=1 /UG=Rn.65427 /UG_TITLE=ESTs, Highly similar to coatomer protein complex, subunit zeta 1; nonclathrin coat protein zeta1-COP (Mus musculus) (M.musculus) BF406339 coatomer protein complex, subunit zeta 1 Copz1 315345 NM_001108117 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // not recorded /// 0006891 // intra-Golgi vesicle-mediated transport // not recorded /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0048205 // COPI coating of Golgi vesicle // not recorded 0005829 // cytosol // not recorded /// 0030117 // membrane coat // inferred from electronic annotation /// 0030126 // COPI vesicle coat // not recorded 0005515 // protein binding // inferred from electronic annotation 1394566_at AI549119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549119 /DB_XREF=gi:4466607 /DB_XREF=UI-R-C3-tq-g-07-0-UI.s1 /CLONE=UI-R-C3-tq-g-07-0-UI /FEA=EST /CNT=4 /TID=Rn.63820.1 /TIER=ConsEnd /STK=1 /UG=Rn.63820 /UG_TITLE=ESTs AI549119 similar to hypothetical protein FLJ13188 RGD1305500 308004 NM_001107448 1394567_at AW535805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535805 /DB_XREF=gi:7178224 /DB_XREF=UI-R-BV0p-aoi-d-12-0-UI.s1 /CLONE=UI-R-BV0p-aoi-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.48563.1 /TIER=ConsEnd /STK=1 /UG=Rn.48563 /UG_TITLE=ESTs AW535805 quiescin Q6 sulfhydryl oxidase 2 Qsox2 681023 NM_001109434 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0016972 // thiol oxidase activity // inferred from electronic annotation 1394568_at BE108086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108086 /DB_XREF=gi:8500191 /DB_XREF=UI-R-CA0-axa-c-05-0-UI.s1 /CLONE=UI-R-CA0-axa-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.41744.1 /TIER=ConsEnd /STK=1 /UG=Rn.41744 /UG_TITLE=ESTs BE108086 similar to DNA segment, Chr 10, Wayne State University 102, expressed RGD1563365 299700 XM_001079678 /// XM_002729760 1394569_at AI549154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549154 /DB_XREF=gi:4466642 /DB_XREF=UI-R-C3-ts-c-05-0-UI.s1 /CLONE=UI-R-C3-ts-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.32512.1 /TIER=ConsEnd /STK=1 /UG=Rn.32512 /UG_TITLE=ESTs AI549154 1394570_at BF284360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284360 /DB_XREF=gi:11215430 /DB_XREF=EST448951 /CLONE=RGIEO70 /FEA=EST /CNT=4 /TID=Rn.55262.1 /TIER=ConsEnd /STK=1 /UG=Rn.55262 /UG_TITLE=ESTs BF284360 X-linked Kx blood group (McLeod syndrome) homolog Xk 497078 NM_001012227 0006810 // transport // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394571_at BF419402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419402 /DB_XREF=gi:11407391 /DB_XREF=UI-R-CA1-bnr-c-04-0-UI.s1 /CLONE=UI-R-CA1-bnr-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.63503.1 /TIER=ConsEnd /STK=1 /UG=Rn.63503 /UG_TITLE=ESTs BF419402 hypothetical LOC300074 RGD1305939 300074 NM_001130581 1394572_at AI231560 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231560 /DB_XREF=gi:3815440 /DB_XREF=EST228248 /CLONE=REMDM04 /FEA=EST /CNT=4 /TID=Rn.55426.1 /TIER=ConsEnd /STK=1 /UG=Rn.55426 /UG_TITLE=ESTs AI231560 1394573_at BF288475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288475 /DB_XREF=gi:11219545 /DB_XREF=EST453066 /CLONE=RGIGU21 /FEA=EST /CNT=4 /TID=Rn.55604.1 /TIER=ConsEnd /STK=1 /UG=Rn.55604 /UG_TITLE=ESTs BF288475 1394574_at BF398290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398290 /DB_XREF=gi:11383279 /DB_XREF=UI-R-BS2-bfb-g-06-0-UI.s1 /CLONE=UI-R-BS2-bfb-g-06-0-UI /FEA=EST /CNT=4 /TID=Rn.55563.1 /TIER=ConsEnd /STK=1 /UG=Rn.55563 /UG_TITLE=ESTs BF398290 1394575_at BI281656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281656 /DB_XREF=gi:14931608 /DB_XREF=UI-R-CT0s-cau-h-11-0-UI.s1 /CLONE=UI-R-CT0s-cau-h-11-0-UI /FEA=EST /CNT=4 /TID=Rn.57564.1 /TIER=ConsEnd /STK=1 /UG=Rn.57564 /UG_TITLE=ESTs BI281656 Guanine nucleotide binding protein, alpha stimulating, olfactory type Gnal 24611 NM_001191836 /// XM_001060701 /// XM_001060758 /// XM_002728555 /// XM_341626 0001975 // response to amphetamine // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // traceable author statement /// 0007190 // activation of adenylate cyclase activity // not recorded /// 0007191 // activation of adenylate cyclase activity by dopamine receptor signaling pathway // not recorded /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0007608 // sensory perception of smell // not recorded /// 0031000 // response to caffeine // not recorded 0005834 // heterotrimeric G-protein complex // traceable author statement /// 0005886 // plasma membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0004016 // adenylate cyclase activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation /// 0019001 // guanyl nucleotide binding // inferred from electronic annotation /// 0050827 // toxin receptor binding // inferred from physical interaction 1394576_at AA900572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900572 /DB_XREF=gi:4233064 /DB_XREF=UI-R-E0-dn-a-09-0-UI.s1 /CLONE=UI-R-E0-dn-a-09-0-UI /FEA=EST /CNT=4 /TID=Rn.32462.1 /TIER=ConsEnd /STK=1 /UG=Rn.32462 /UG_TITLE=ESTs AA900572 1394577_at BI279384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279384 /DB_XREF=gi:14927147 /DB_XREF=UI-R-DA0-byn-g-08-0-UI.s1 /CLONE=UI-R-DA0-byn-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.57762.1 /TIER=ConsEnd /STK=1 /UG=Rn.57762 /UG_TITLE=ESTs BI279384 1394578_at BI299761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299761 /DB_XREF=gi:14976041 /DB_XREF=UI-R-CV2-chw-h-12-0-UI.s1 /CLONE=UI-R-CV2-chw-h-12-0-UI /FEA=EST /CNT=4 /TID=Rn.76508.1 /TIER=ConsEnd /STK=1 /UG=Rn.76508 /UG_TITLE=ESTs BI299761 1394579_at BF287769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287769 /DB_XREF=gi:11218839 /DB_XREF=EST452360 /CLONE=RGIGJ81 /FEA=EST /CNT=4 /TID=Rn.30658.1 /TIER=ConsEnd /STK=1 /UG=Rn.30658 /UG_TITLE=ESTs BF287769 1394580_at BF396742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396742 /DB_XREF=gi:11381722 /DB_XREF=UI-R-BS2-beu-f-06-0-UI.s1 /CLONE=UI-R-BS2-beu-f-06-0-UI /FEA=EST /CNT=4 /TID=Rn.70696.1 /TIER=ConsEnd /STK=1 /UG=Rn.70696 /UG_TITLE=ESTs BF396742 tumor suppressor candidate 4 Tusc4 363138 NM_001025744 0033673 // negative regulation of kinase activity // not recorded 0004672 // protein kinase activity // not recorded /// 0005515 // protein binding // not recorded 1394581_at AI709431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709431 /DB_XREF=gi:4999207 /DB_XREF=UI-R-C3-ss-c-01-0-UI.s1 /CLONE=UI-R-C3-ss-c-01-0-UI /FEA=EST /CNT=4 /TID=Rn.40695.1 /TIER=ConsEnd /STK=1 /UG=Rn.40695 /UG_TITLE=ESTs AI709431 1394582_at AW531299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531299 /DB_XREF=gi:7173728 /DB_XREF=UI-R-C4-akw-d-04-0-UI.s1 /CLONE=UI-R-C4-akw-d-04-0-UI /FEA=EST /CNT=4 /TID=Rn.44995.1 /TIER=ConsEnd /STK=1 /UG=Rn.44995 /UG_TITLE=ESTs AW531299 1394583_at BF415738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415738 /DB_XREF=gi:11403727 /DB_XREF=UI-R-CA0-bke-b-05-0-UI.s1 /CLONE=UI-R-CA0-bke-b-05-0-UI /FEA=EST /CNT=4 /TID=Rn.51593.1 /TIER=ConsEnd /STK=1 /UG=Rn.51593 /UG_TITLE=ESTs BF415738 RGD1565959 RGD1565959 301230 NM_001106886 1394584_at AI232859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232859 /DB_XREF=gi:4135808 /DB_XREF=EST229547 /CLONE=RKICH72 /FEA=EST /CNT=5 /TID=Rn.56008.1 /TIER=ConsEnd /STK=1 /UG=Rn.56008 /UG_TITLE=ESTs AI232859 1394585_at BE116089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116089 /DB_XREF=gi:8508194 /DB_XREF=UI-R-BS1-axz-c-10-0-UI.s1 /CLONE=UI-R-BS1-axz-c-10-0-UI /FEA=EST /CNT=5 /TID=Rn.52619.1 /TIER=ConsEnd /STK=1 /UG=Rn.52619 /UG_TITLE=ESTs BE116089 1394586_at AI105389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105389 /DB_XREF=gi:3709479 /DB_XREF=EST214678 /CLONE=RKIBJ66 /FEA=EST /CNT=5 /TID=Rn.55982.1 /TIER=ConsEnd /STK=1 /UG=Rn.55982 /UG_TITLE=ESTs AI105389 1394587_at AI576038 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576038 /DB_XREF=gi:4560414 /DB_XREF=UI-R-G0-uo-c-06-0-UI.s1 /CLONE=UI-R-G0-uo-c-06-0-UI /FEA=EST /CNT=5 /TID=Rn.40163.1 /TIER=ConsEnd /STK=1 /UG=Rn.40163 /UG_TITLE=ESTs, Highly similar to HNF3FH TRANSCRIPTION FACTOR GENESIS (R.norvegicus) AI576038 1394588_at BE113841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113841 /DB_XREF=gi:8505946 /DB_XREF=UI-R-CA0-axe-a-09-0-UI.s1 /CLONE=UI-R-CA0-axe-a-09-0-UI /FEA=EST /CNT=4 /TID=Rn.34120.1 /TIER=ConsEnd /STK=1 /UG=Rn.34120 /UG_TITLE=ESTs BE113841 1394589_at AA892134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892134 /DB_XREF=gi:4132130 /DB_XREF=EST195937 /CLONE=RKIAM76 /FEA=EST /CNT=4 /TID=Rn.30125.1 /TIER=ConsEnd /STK=1 /UG=Rn.30125 /UG_TITLE=ESTs AA892134 1394590_at AA997472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997472 /DB_XREF=gi:4283842 /DB_XREF=UI-R-C0-hl-g-04-0-UI.s1 /CLONE=UI-R-C0-hl-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.33097.1 /TIER=ConsEnd /STK=1 /UG=Rn.33097 /UG_TITLE=ESTs AA997472 NFKB inhibitor interacting Ras-like 1 Nkiras1 305751 NM_001107252 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1394591_at AI411280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411280 /DB_XREF=gi:4254784 /DB_XREF=EST239574 /CLONE=RKIEO57 /FEA=EST /CNT=4 /TID=Rn.43728.1 /TIER=ConsEnd /STK=1 /UG=Rn.43728 /UG_TITLE=ESTs, Highly similar to zinc finger protein 207 (Mus musculus) (M.musculus) AI411280 zinc finger protein 207 Zfp207 303763 NM_001039020 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0008270 // zinc ion binding // inferred from electronic annotation 1394592_at BF287078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287078 /DB_XREF=gi:11218148 /DB_XREF=EST451669 /CLONE=RGIFY81 /FEA=EST /CNT=4 /TID=Rn.33774.1 /TIER=ConsEnd /STK=1 /UG=Rn.33774 /UG_TITLE=ESTs BF287078 1394593_at AA801339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA801339 /DB_XREF=gi:2864294 /DB_XREF=EST190836 /CLONE=RSPAA07 /FEA=EST /CNT=4 /TID=Rn.55891.1 /TIER=ConsEnd /STK=1 /UG=Rn.55891 /UG_TITLE=ESTs, Moderately similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) AA801339 1394594_at BM383974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383974 /DB_XREF=gi:18184027 /DB_XREF=UI-R-DM1-ckc-m-11-0-UI.s1 /CLONE=UI-R-DM1-ckc-m-11-0-UI /FEA=EST /CNT=4 /TID=Rn.54009.1 /TIER=ConsEnd /STK=1 /UG=Rn.54009 /UG_TITLE=ESTs BM383974 1394595_at AI763957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763957 /DB_XREF=gi:5209892 /DB_XREF=UI-R-Y0-acv-b-07-0-UI.s1 /CLONE=UI-R-Y0-acv-b-07-0-UI /FEA=EST /CNT=4 /TID=Rn.34340.1 /TIER=ConsEnd /STK=1 /UG=Rn.34340 /UG_TITLE=ESTs, Weakly similar to PROTEASOME DELTA CHAIN PRECURSOR (R.norvegicus) AI763957 stromal interaction molecule 1 Stim1 361618 NM_001108496 0005513 // detection of calcium ion // not recorded /// 0005513 // detection of calcium ion // inferred from sequence or structural similarity /// 0005513 // detection of calcium ion // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0032237 // activation of store-operated calcium channel activity // not recorded /// 0032237 // activation of store-operated calcium channel activity // inferred from sequence or structural similarity /// 0032237 // activation of store-operated calcium channel activity // inferred from electronic annotation /// 0051924 // regulation of calcium ion transport // not recorded /// 0051924 // regulation of calcium ion transport // inferred from sequence or structural similarity /// 0051924 // regulation of calcium ion transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded /// 0030176 // integral to endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051010 // microtubule plus-end binding // not recorded /// 0051010 // microtubule plus-end binding // inferred from sequence or structural similarity /// 0051010 // microtubule plus-end binding // inferred from electronic annotation 1394596_at AW531463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531463 /DB_XREF=gi:7173877 /DB_XREF=UI-R-BO1-aji-c-08-0-UI.s1 /CLONE=UI-R-BO1-aji-c-08-0-UI /FEA=EST /CNT=4 /TID=Rn.47713.1 /TIER=ConsEnd /STK=1 /UG=Rn.47713 /UG_TITLE=ESTs AW531463 1394597_at AI101356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101356 /DB_XREF=gi:3706269 /DB_XREF=EST210645 /CLONE=RBRBM10 /FEA=EST /CNT=4 /TID=Rn.64473.1 /TIER=ConsEnd /STK=1 /UG=Rn.64473 /UG_TITLE=ESTs AI101356 DDHD domain containing 1 Ddhd1 305816 NM_001033066 0046872 // metal ion binding // inferred from electronic annotation 1394598_at AA956038 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956038 /DB_XREF=gi:4238432 /DB_XREF=UI-R-E1-fe-c-02-0-UI.s1 /CLONE=UI-R-E1-fe-c-02-0-UI /FEA=EST /CNT=4 /TID=Rn.32817.1 /TIER=ConsEnd /STK=1 /UG=Rn.32817 /UG_TITLE=ESTs AA956038 1394599_at AA998165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998165 /DB_XREF=gi:4287970 /DB_XREF=UI-R-C0-id-f-09-0-UI.s1 /CLONE=UI-R-C0-id-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.43855.1 /TIER=ConsEnd /STK=1 /UG=Rn.43855 /UG_TITLE=ESTs AA998165 ZXD family zinc finger C Zxdc 362399 XM_002729394 /// XM_002729395 /// XM_575607 0045941 // positive regulation of transcription // not recorded 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0030275 // LRR domain binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0070742 // C2H2 zinc finger domain binding // not recorded 1394600_at AI146026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146026 /DB_XREF=gi:3667825 /DB_XREF=UI-R-BT0-qg-a-07-0-UI.s1 /CLONE=UI-R-BT0-qg-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.28706.1 /TIER=ConsEnd /STK=1 /UG=Rn.28706 /UG_TITLE=ESTs AI146026 regulator of G-protein signaling 17 Rgs17 308118 NM_001107459 0004871 // signal transducer activity // inferred from electronic annotation 1394601_at AW526910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526910 /DB_XREF=gi:7169324 /DB_XREF=UI-R-BO1-ajf-d-12-0-UI.s1 /CLONE=UI-R-BO1-ajf-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.51154.1 /TIER=ConsEnd /STK=1 /UG=Rn.51154 /UG_TITLE=ESTs AW526910 1394602_at BF414699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414699 /DB_XREF=gi:11402688 /DB_XREF=UI-R-BJ2-bow-a-10-0-UI.s1 /CLONE=UI-R-BJ2-bow-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.65405.1 /TIER=ConsEnd /STK=1 /UG=Rn.65405 /UG_TITLE=ESTs BF414699 1394603_at AW527711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527711 /DB_XREF=gi:7170125 /DB_XREF=UI-R-BT1-ajy-c-12-0-UI.s1 /CLONE=UI-R-BT1-ajy-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.64203.1 /TIER=ConsEnd /STK=1 /UG=Rn.64203 /UG_TITLE=ESTs AW527711 1394604_at BF562920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562920 /DB_XREF=gi:11672650 /DB_XREF=UI-R-BO0-aig-b-07-0-UI.r1 /CLONE=UI-R-BO0-aig-b-07-0-UI /FEA=EST /CNT=4 /TID=Rn.45329.1 /TIER=ConsEnd /STK=1 /UG=Rn.45329 /UG_TITLE=ESTs BF562920 1394605_at AI409909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409909 /DB_XREF=gi:4253413 /DB_XREF=EST238202 /CLONE=RPLDM90 /FEA=EST /CNT=4 /TID=Rn.43831.1 /TIER=ConsEnd /STK=1 /UG=Rn.43831 /UG_TITLE=ESTs AI409909 similar to CDNA sequence BC017647 RGD1566149 497960 NM_001109038 1394606_at AW525951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525951 /DB_XREF=gi:7168336 /DB_XREF=UI-R-BO1-aiw-f-03-0-UI.s1 /CLONE=UI-R-BO1-aiw-f-03-0-UI /FEA=EST /CNT=4 /TID=Rn.46042.1 /TIER=ConsEnd /STK=1 /UG=Rn.46042 /UG_TITLE=ESTs AW525951 1394607_at AW523203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523203 /DB_XREF=gi:7165588 /DB_XREF=UI-R-BO0-ahs-e-08-0-UI.s1 /CLONE=UI-R-BO0-ahs-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.64225.1 /TIER=ConsEnd /STK=1 /UG=Rn.64225 /UG_TITLE=ESTs, Weakly similar to A57607 Munc13-1 - rat (R.norvegicus) AW523203 RAB11 family interacting protein 2 (class I) Rab11fip2 308003 NM_001107447 0015031 // protein transport // inferred from electronic annotation 0005768 // endosome // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1394608_at AI454766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454766 /DB_XREF=gi:4296021 /DB_XREF=UI-R-C2p-qm-a-07-0-UI.s1 /CLONE=UI-R-C2p-qm-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.35107.1 /TIER=ConsEnd /STK=1 /UG=Rn.35107 /UG_TITLE=ESTs AI454766 1394609_at AI548628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548628 /DB_XREF=gi:4466116 /DB_XREF=UI-R-C3-te-d-12-0-UI.s1 /CLONE=UI-R-C3-te-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.50329.1 /TIER=ConsEnd /STK=1 /UG=Rn.50329 /UG_TITLE=ESTs AI548628 actin-binding LIM protein 2 Ablim2 360958 NM_001001514 /// NM_001177695 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0030016 // myofibril // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1394610_at BF408313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408313 /DB_XREF=gi:11396293 /DB_XREF=UI-R-BJ2-brb-d-02-0-UI.s1 /CLONE=UI-R-BJ2-brb-d-02-0-UI /FEA=EST /CNT=4 /TID=Rn.54170.1 /TIER=ConsEnd /STK=1 /UG=Rn.54170 /UG_TITLE=ESTs BF408313 growth factor receptor bound protein 10 Grb10 498416 NM_001109093 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from sequence or structural similarity /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0042326 // negative regulation of phosphorylation // not recorded /// 0046325 // negative regulation of glucose import // not recorded /// 0046627 // negative regulation of insulin receptor signaling pathway // not recorded /// 0048009 // insulin-like growth factor receptor signaling pathway // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0005070 // SH3/SH2 adaptor activity // not recorded /// 0005158 // insulin receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394611_at BF282982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282982 /DB_XREF=gi:11214052 /DB_XREF=EST447573 /CLONE=RGIDV86 /FEA=EST /CNT=4 /TID=Rn.56122.1 /TIER=ConsEnd /STK=1 /UG=Rn.56122 /UG_TITLE=ESTs BF282982 1394612_at AW535206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535206 /DB_XREF=gi:7177665 /DB_XREF=UI-R-C4-alv-a-03-0-UI.s1 /CLONE=UI-R-C4-alv-a-03-0-UI /FEA=EST /CNT=4 /TID=Rn.48453.1 /TIER=ConsEnd /STK=1 /UG=Rn.48453 /UG_TITLE=ESTs AW535206 Similar to a disintegrin and metalloprotease domain 4 LOC500688 500688 NM_001109277 0006508 // proteolysis // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1394613_at BF288842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288842 /DB_XREF=gi:11219912 /DB_XREF=EST453433 /CLONE=RGIGY56 /FEA=EST /CNT=4 /TID=Rn.56107.1 /TIER=ConsEnd /STK=1 /UG=Rn.56107 /UG_TITLE=ESTs BF288842 1394614_at BI290687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290687 /DB_XREF=gi:14949491 /DB_XREF=UI-R-DK0-cfy-c-01-0-UI.s1 /CLONE=UI-R-DK0-cfy-c-01-0-UI /FEA=EST /CNT=4 /TID=Rn.34975.1 /TIER=ConsEnd /STK=1 /UG=Rn.34975 /UG_TITLE=ESTs, Moderately similar to KJHUGU N-acetylglucosamine-6-sulfatase (H.sapiens) BI290687 glucosamine (N-acetyl)-6-sulfatase Gns 299825 NM_001011989 0008152 // metabolic process // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // inferred from electronic annotation /// 0042340 // keratan sulfate catabolic process // inferred from direct assay 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005539 // glycosaminoglycan binding // inferred from physical interaction /// 0008449 // N-acetylglucosamine-6-sulfatase activity // inferred from direct assay /// 0008449 // N-acetylglucosamine-6-sulfatase activity // inferred from electronic annotation /// 0008484 // sulfuric ester hydrolase activity // not recorded /// 0008484 // sulfuric ester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0043199 // sulfate binding // inferred from physical interaction 1394615_at AI511008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511008 /DB_XREF=gi:4416707 /DB_XREF=UI-R-C2p-ny-e-02-0-UI.s1 /CLONE=UI-R-C2p-ny-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.67065.1 /TIER=ConsEnd /STK=1 /UG=Rn.67065 /UG_TITLE=ESTs AI511008 1394616_at AI013798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013798 /DB_XREF=gi:3227854 /DB_XREF=EST208473 /CLONE=RSPBS93 /FEA=EST /CNT=4 /TID=Rn.53874.1 /TIER=ConsEnd /STK=1 /UG=Rn.53874 /UG_TITLE=ESTs, Highly similar to Y081_HUMAN HYPOTHETICAL PROTEIN KIAA0081 (H.sapiens) AI013798 mesoderm development candidate 2 Mesdc2 308796 NM_001008345 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation 1394617_at BF284367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284367 /DB_XREF=gi:11215437 /DB_XREF=EST448958 /CLONE=RGIEO77 /FEA=EST /CNT=3 /TID=Rn.31213.1 /TIER=ConsEnd /STK=1 /UG=Rn.31213 /UG_TITLE=ESTs, Weakly similar to HPS1_HUMAN PROTEIN PHPS1 (H.sapiens) BF284367 abhydrolase domain containing 15 Abhd15 303343 NM_001107025 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1394618_at BF287471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287471 /DB_XREF=gi:11218541 /DB_XREF=EST452062 /CLONE=RGIGG48 /FEA=EST /CNT=3 /TID=Rn.55434.1 /TIER=ConsEnd /STK=1 /UG=Rn.55434 /UG_TITLE=ESTs BF287471 1394619_at AI598752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598752 /DB_XREF=gi:4607800 /DB_XREF=EST250455 /CLONE=REMDW70 /FEA=EST /CNT=3 /TID=Rn.40288.1 /TIER=ConsEnd /STK=1 /UG=Rn.40288 /UG_TITLE=ESTs, Weakly similar to A25483 env polyprotein, retrovirus-related - mouse (M.musculus) AI598752 1394620_at BI288579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288579 /DB_XREF=gi:14945305 /DB_XREF=UI-R-DK0-cdg-e-07-0-UI.s1 /CLONE=UI-R-DK0-cdg-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.32352.1 /TIER=ConsEnd /STK=1 /UG=Rn.32352 /UG_TITLE=ESTs, Moderately similar to MT1 RAT METALLOTHIONEIN-I (R.norvegicus) BI288579 1394621_at BI292153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292153 /DB_XREF=gi:14952380 /DB_XREF=UI-R-DN0-ciu-p-20-0-UI.s1 /CLONE=UI-R-DN0-ciu-p-20-0-UI /FEA=EST /CNT=3 /TID=Rn.79304.1 /TIER=ConsEnd /STK=1 /UG=Rn.79304 /UG_TITLE=ESTs, Highly similar to T47142 hypothetical protein DKFZp761P0724.1 (H.sapiens) BI292153 spermine oxidase Smox 308652 NM_001134854 0046208 // spermine catabolic process // not recorded 0046592 // polyamine oxidase activity // not recorded 1394622_at BE097185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097185 /DB_XREF=gi:8488116 /DB_XREF=UI-R-BO1-apu-c-03-0-UI.s1 /CLONE=UI-R-BO1-apu-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.65576.1 /TIER=ConsEnd /STK=1 /UG=Rn.65576 /UG_TITLE=ESTs BE097185 1394623_at AA851041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851041 /DB_XREF=gi:2938581 /DB_XREF=EST193809 /CLONE=ROVAP88 /FEA=EST /CNT=3 /TID=Rn.55584.1 /TIER=ConsEnd /STK=1 /UG=Rn.55584 /UG_TITLE=ESTs AA851041 1394624_at AW528017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528017 /DB_XREF=gi:7170431 /DB_XREF=UI-R-BT1-akg-g-03-0-UI.s1 /CLONE=UI-R-BT1-akg-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.46740.1 /TIER=ConsEnd /STK=1 /UG=Rn.46740 /UG_TITLE=ESTs AW528017 1394625_at AI234811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234811 /DB_XREF=gi:3828317 /DB_XREF=EST231373 /CLONE=ROVCI05 /FEA=EST /CNT=3 /TID=Rn.55704.1 /TIER=ConsEnd /STK=1 /UG=Rn.55704 /UG_TITLE=ESTs AI234811 transmembrane protein 144 Tmem144 361968 NM_001108551 1394626_at AW527544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527544 /DB_XREF=gi:7169958 /DB_XREF=UI-R-BO1-ajv-e-04-0-UI.s1 /CLONE=UI-R-BO1-ajv-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.46568.1 /TIER=ConsEnd /STK=1 /UG=Rn.46568 /UG_TITLE=ESTs AW527544 homeobox containing 1 Hmbox1 305968 XM_001066752 /// XM_002725112 /// XM_002728289 /// XM_224289 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1394627_at AW527508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527508 /DB_XREF=gi:7169922 /DB_XREF=UI-R-BO1-ajv-b-02-0-UI.s1 /CLONE=UI-R-BO1-ajv-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.46557.1 /TIER=ConsEnd /STK=1 /UG=Rn.46557 /UG_TITLE=ESTs AW527508 sorting nexin 19 Snx19 315478 NM_001108131 0007154 // cell communication // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1394628_at AI234854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234854 /DB_XREF=gi:4136038 /DB_XREF=EST231416 /CLONE=ROVCI66 /FEA=EST /CNT=3 /TID=Rn.55709.1 /TIER=ConsEnd /STK=1 /UG=Rn.55709 /UG_TITLE=ESTs AI234854 1394629_at AA944369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944369 /DB_XREF=gi:3104285 /DB_XREF=EST199868 /CLONE=REMAG09 /FEA=EST /CNT=3 /TID=Rn.55420.1 /TIER=ConsEnd /STK=1 /UG=Rn.55420 /UG_TITLE=ESTs AA944369 hypothetical protein LOC691543 LOC691543 691543 NM_001109645 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 1394630_at BE114809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114809 /DB_XREF=gi:8506914 /DB_XREF=UI-R-BJ1-awp-e-12-0-UI.s1 /CLONE=UI-R-BJ1-awp-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.32800.1 /TIER=ConsEnd /STK=1 /UG=Rn.32800 /UG_TITLE=ESTs BE114809 1394631_at BM392159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392159 /DB_XREF=gi:18192212 /DB_XREF=UI-R-DO1-ckp-g-08-0-UI.s1 /CLONE=UI-R-DO1-ckp-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.82672.1 /TIER=ConsEnd /STK=1 /UG=Rn.82672 /UG_TITLE=ESTs, Weakly similar to PR domain containing 7; PR-domain family protein 4 (Homo sapiens) (H.sapiens) BM392159 PR domain containing 8 Prdm8 305198 NM_001107207 0022008 // neurogenesis // not recorded 1394632_at AA875589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875589 /DB_XREF=gi:4231468 /DB_XREF=UI-R-E0-cv-a-05-0-UI.s1 /CLONE=UI-R-E0-cv-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.74341.1 /TIER=ConsEnd /STK=1 /UG=Rn.74341 /UG_TITLE=ESTs AA875589 1394633_at BF288321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288321 /DB_XREF=gi:11219391 /DB_XREF=EST452912 /CLONE=RGIGS37 /FEA=EST /CNT=3 /TID=Rn.55543.1 /TIER=ConsEnd /STK=1 /UG=Rn.55543 /UG_TITLE=ESTs BF288321 LIM domain and actin binding 1 Lima1 300228 NM_001191615 /// XM_001064221 /// XM_217039 0030835 // negative regulation of actin filament depolymerization // not recorded /// 0031529 // ruffle organization // not recorded /// 0051017 // actin filament bundle assembly // not recorded 0001725 // stress fiber // not recorded /// 0005925 // focal adhesion // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded 0003785 // actin monomer binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1394634_at AI176634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176634 /DB_XREF=gi:3727272 /DB_XREF=EST220225 /CLONE=ROVBU83 /FEA=EST /CNT=3 /TID=Rn.55654.1 /TIER=ConsEnd /STK=1 /UG=Rn.55654 /UG_TITLE=ESTs AI176634 DnaJ (Hsp40) homolog, subfamily C, member 10 Dnajc10 295690 NM_001106486 0006457 // protein folding // inferred from electronic annotation /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1394635_at AA963027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963027 /DB_XREF=gi:4277998 /DB_XREF=UI-R-E1-gd-h-05-0-UI.s1 /CLONE=UI-R-E1-gd-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.37780.1 /TIER=ConsEnd /STK=1 /UG=Rn.37780 /UG_TITLE=ESTs AA963027 1394636_at BM385501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385501 /DB_XREF=gi:18185554 /DB_XREF=UI-R-DM1-cke-m-21-0-UI.s1 /CLONE=UI-R-DM1-cke-m-21-0-UI /FEA=EST /CNT=3 /TID=Rn.81605.1 /TIER=ConsEnd /STK=1 /UG=Rn.81605 /UG_TITLE=ESTs BM385501 1394637_at BF390346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390346 /DB_XREF=gi:11375192 /DB_XREF=UI-R-CA1-bcn-h-06-0-UI.s1 /CLONE=UI-R-CA1-bcn-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.64234.1 /TIER=ConsEnd /STK=1 /UG=Rn.64234 /UG_TITLE=ESTs BF390346 1394638_at BE096307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096307 /DB_XREF=gi:8487238 /DB_XREF=UI-R-BU0-ape-e-06-0-UI.s1 /CLONE=UI-R-BU0-ape-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.68236.1 /TIER=ConsEnd /STK=1 /UG=Rn.68236 /UG_TITLE=ESTs, Weakly similar to 1917150A collagen:SUBUNIT=alpha1:ISOTYPE=VIII (R.norvegicus) BE096307 B-cell CLL/lymphoma 9 Bcl9 310704 NM_001107703 1394639_at AI709770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709770 /DB_XREF=gi:4999546 /DB_XREF=UI-R-C3-tj-d-04-0-UI.s1 /CLONE=UI-R-C3-tj-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.72426.1 /TIER=ConsEnd /STK=1 /UG=Rn.72426 /UG_TITLE=ESTs AI709770 CDC42 small effector 2 Cdc42se2 691031 NM_001126089 0006909 // phagocytosis // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0009966 // regulation of signal transduction // not recorded /// 0009966 // regulation of signal transduction // inferred from sequence or structural similarity /// 0009966 // regulation of signal transduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005198 // structural molecule activity // not recorded /// 0005198 // structural molecule activity // inferred from sequence or structural similarity /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394640_at AI177100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177100 /DB_XREF=gi:3727738 /DB_XREF=EST220707 /CLONE=ROVCA79 /FEA=EST /CNT=3 /TID=Rn.29070.1 /TIER=ConsEnd /STK=1 /UG=Rn.29070 /UG_TITLE=ESTs AI177100 1394641_at BF288295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288295 /DB_XREF=gi:11219365 /DB_XREF=EST452886 /CLONE=RGIGS06 /FEA=EST /CNT=3 /TID=Rn.30210.1 /TIER=ConsEnd /STK=1 /UG=Rn.30210 /UG_TITLE=ESTs BF288295 1394642_at AI228209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228209 /DB_XREF=gi:3812096 /DB_XREF=EST224904 /CLONE=RBRCR92 /FEA=EST /CNT=3 /TID=Rn.54115.1 /TIER=ConsEnd /STK=1 /UG=Rn.54115 /UG_TITLE=ESTs AI228209 1394643_at AA819409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819409 /DB_XREF=gi:4228547 /DB_XREF=UI-R-A0-bl-f-01-0-UI.s1 /CLONE=UI-R-A0-bl-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.34150.1 /TIER=ConsEnd /STK=1 /UG=Rn.34150 /UG_TITLE=ESTs AA819409 1394644_at BF285817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285817 /DB_XREF=gi:11216887 /DB_XREF=EST450408 /CLONE=RGIFK36 /FEA=EST /CNT=3 /TID=Rn.55322.1 /TIER=ConsEnd /STK=1 /UG=Rn.55322 /UG_TITLE=ESTs BF285817 1394645_at BF287691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287691 /DB_XREF=gi:11218761 /DB_XREF=EST452282 /CLONE=RGIGI77 /FEA=EST /CNT=3 /TID=Rn.55462.1 /TIER=ConsEnd /STK=1 /UG=Rn.55462 /UG_TITLE=ESTs BF287691 1394646_at AA899105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899105 /DB_XREF=gi:4231605 /DB_XREF=UI-R-E0-cw-d-03-0-UI.s1 /CLONE=UI-R-E0-cw-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.32370.1 /TIER=ConsEnd /STK=1 /UG=Rn.32370 /UG_TITLE=ESTs AA899105 1394647_at AA819479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819479 /DB_XREF=gi:4228615 /DB_XREF=UI-R-A0-bl-a-04-0-UI.s1 /CLONE=UI-R-A0-bl-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.34167.1 /TIER=ConsEnd /STK=1 /UG=Rn.34167 /UG_TITLE=ESTs AA819479 1394648_at BF284608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284608 /DB_XREF=gi:11215678 /DB_XREF=EST449199 /CLONE=RGIES79 /FEA=EST /CNT=3 /TID=Rn.28810.1 /TIER=ConsEnd /STK=1 /UG=Rn.28810 /UG_TITLE=ESTs BF284608 1394649_at BF391635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391635 /DB_XREF=gi:11376489 /DB_XREF=UI-R-CA1-bcw-f-11-0-UI.s1 /CLONE=UI-R-CA1-bcw-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.75493.1 /TIER=ConsEnd /STK=1 /UG=Rn.75493 /UG_TITLE=ESTs BF391635 ankyrin repeat domain 6 Ankrd6 500430 NM_001134969 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1394650_at BF284574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284574 /DB_XREF=gi:11215644 /DB_XREF=EST449165 /CLONE=RGIES38 /FEA=EST /CNT=3 /TID=Rn.44588.1 /TIER=ConsEnd /STK=1 /UG=Rn.44588 /UG_TITLE=ESTs BF284574 1394651_at AI145999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145999 /DB_XREF=gi:3667798 /DB_XREF=UI-R-BT0-pz-c-07-0-UI.s1 /CLONE=UI-R-BT0-pz-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.28697.1 /TIER=ConsEnd /STK=1 /UG=Rn.28697 /UG_TITLE=ESTs AI145999 similar to hypothetical protein FLJ32884 RGD1309453 310689 NM_001107701 1394652_at BI285693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285693 /DB_XREF=gi:14939596 /DB_XREF=UI-R-CT0s-cas-d-10-0-UI.s1 /CLONE=UI-R-CT0s-cas-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.55938.1 /TIER=ConsEnd /STK=1 /UG=Rn.55938 /UG_TITLE=ESTs BI285693 mediator complex subunit 28 Med28 305391 NM_001107217 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394653_at BM387172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387172 /DB_XREF=gi:18187225 /DB_XREF=UI-R-CN1-cji-l-03-0-UI.s1 /CLONE=UI-R-CN1-cji-l-03-0-UI /FEA=EST /CNT=3 /TID=Rn.33652.1 /TIER=ConsEnd /STK=1 /UG=Rn.33652 /UG_TITLE=ESTs BM387172 1394654_at BF398431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398431 /DB_XREF=gi:11383421 /DB_XREF=UI-R-BS2-beo-g-08-0-UI.s1 /CLONE=UI-R-BS2-beo-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.64213.1 /TIER=ConsEnd /STK=1 /UG=Rn.64213 /UG_TITLE=ESTs, Moderately similar to T00341 hypothetical protein KIAA0576 (H.sapiens) BF398431 zinc finger protein 451 Zfp451 316312 NM_001033705 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1394655_at AI601993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI601993 /DB_XREF=gi:4611154 /DB_XREF=UI-R-Y0-uv-e-06-0-UI.s2 /CLONE=UI-R-Y0-uv-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.72472.1 /TIER=ConsEnd /STK=1 /UG=Rn.72472 /UG_TITLE=ESTs AI601993 1394656_at AW528815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528815 /DB_XREF=gi:7171229 /DB_XREF=UI-R-BT1-akj-a-02-0-UI.s1 /CLONE=UI-R-BT1-akj-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.55023.1 /TIER=ConsEnd /STK=1 /UG=Rn.55023 /UG_TITLE=ESTs AW528815 1394657_at BM386387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386387 /DB_XREF=gi:18186440 /DB_XREF=UI-R-CN1-cjf-h-04-0-UI.s1 /CLONE=UI-R-CN1-cjf-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.81777.1 /TIER=ConsEnd /STK=1 /UG=Rn.81777 /UG_TITLE=ESTs BM386387 Nuclear receptor subfamily 2, group C, member 1 Nr2c1 252924 NM_145780 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1394658_at AI176811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176811 /DB_XREF=gi:3727449 /DB_XREF=EST220407 /CLONE=ROVBX11 /FEA=EST /CNT=3 /TID=Rn.55672.1 /TIER=ConsEnd /STK=1 /UG=Rn.55672 /UG_TITLE=ESTs AI176811 1394659_at BF289445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289445 /DB_XREF=gi:11220515 /DB_XREF=EST454036 /CLONE=RGIHH45 /FEA=EST /CNT=3 /TID=Rn.55772.1 /TIER=ConsEnd /STK=1 /UG=Rn.55772 /UG_TITLE=ESTs BF289445 1394660_at AI136749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136749 /DB_XREF=gi:3637526 /DB_XREF=UI-R-C2p-nw-h-12-0-UI.s1 /CLONE=UI-R-C2p-nw-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.27233.1 /TIER=ConsEnd /STK=1 /UG=Rn.27233 /UG_TITLE=ESTs AI136749 1394661_at BF285315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285315 /DB_XREF=gi:11216385 /DB_XREF=EST449906 /CLONE=RGIFD41 /FEA=EST /CNT=3 /TID=Rn.28313.1 /TIER=ConsEnd /STK=1 /UG=Rn.28313 /UG_TITLE=ESTs BF285315 1394662_at BI295646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295646 /DB_XREF=gi:14959303 /DB_XREF=UI-R-DK0-cek.1-g-12-0-UI.s2 /CLONE=UI-R-DK0-cek.1-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.49864.1 /TIER=ConsEnd /STK=1 /UG=Rn.49864 /UG_TITLE=ESTs BI295646 1394663_at BI294686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294686 /DB_XREF=gi:14957383 /DB_XREF=UI-R-DK0-cen-h-05-0-UI.s1 /CLONE=UI-R-DK0-cen-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.79613.1 /TIER=ConsEnd /STK=1 /UG=Rn.79613 /UG_TITLE=ESTs BI294686 polymerase (DNA directed) sigma Pols 306672 NM_001107333 0042493 // response to drug // not recorded 0005634 // nucleus // not recorded 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1394664_at BF397839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397839 /DB_XREF=gi:11382823 /DB_XREF=UI-R-BS2-bec-c-05-0-UI.s1 /CLONE=UI-R-BS2-bec-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.55974.1 /TIER=ConsEnd /STK=1 /UG=Rn.55974 /UG_TITLE=ESTs BF397839 1394665_at AI408761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408761 /DB_XREF=gi:4252265 /DB_XREF=EST237052 /CLONE=ROVEH05 /FEA=EST /CNT=3 /TID=Rn.55852.1 /TIER=ConsEnd /STK=1 /UG=Rn.55852 /UG_TITLE=ESTs AI408761 RAB33B, member of RAS oncogene family Rab33b 365793 NM_001108944 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005794 // Golgi apparatus // not recorded 0005525 // GTP binding // inferred from electronic annotation 1394666_at AI549596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549596 /DB_XREF=gi:4467084 /DB_XREF=UI-R-C3-tt-h-01-0-UI.s1 /CLONE=UI-R-C3-tt-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.65464.1 /TIER=ConsEnd /STK=1 /UG=Rn.65464 /UG_TITLE=ESTs, Moderately similar to Sh3 Domain From Human Nebulin, Nmr, Minimized Average Structure {SUB 6610-6669 (H.sapiens) AI549596 1394667_at AI137474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137474 /DB_XREF=gi:3638251 /DB_XREF=UI-R-C2p-ol-e-09-0-UI.s1 /CLONE=UI-R-C2p-ol-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.27434.1 /TIER=ConsEnd /STK=1 /UG=Rn.27434 /UG_TITLE=ESTs, Highly similar to JC5527 bone morphogenetic protein type II receptor precursor - mouse (M.musculus) AI137474 Bone morphogenetic protein receptor, type II (serine/threonine kinase) Bmpr2 140590 NM_080407 0001707 // mesoderm formation // inferred from electronic annotation /// 0001707 // mesoderm formation // not recorded /// 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0003085 // negative regulation of systemic arterial blood pressure // inferred from electronic annotation /// 0003085 // negative regulation of systemic arterial blood pressure // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // not recorded /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // inferred from electronic annotation /// 0009267 // cellular response to starvation // inferred from electronic annotation /// 0009267 // cellular response to starvation // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0010595 // positive regulation of endothelial cell migration // inferred from electronic annotation /// 0010595 // positive regulation of endothelial cell migration // not recorded /// 0010634 // positive regulation of epithelial cell migration // inferred from electronic annotation /// 0010634 // positive regulation of epithelial cell migration // not recorded /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0014916 // regulation of lung blood pressure // inferred from electronic annotation /// 0014916 // regulation of lung blood pressure // not recorded /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0030501 // positive regulation of bone mineralization // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // not recorded /// 0030509 // BMP signaling pathway // not recorded /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030513 // positive regulation of BMP signaling pathway // inferred from electronic annotation /// 0030513 // positive regulation of BMP signaling pathway // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045906 // negative regulation of vasoconstriction // not recorded /// 0048010 // vascular endothelial growth factor receptor signaling pathway // not recorded /// 0048286 // lung alveolus development // not recorded 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005901 // caveola // inferred from electronic annotation /// 0005901 // caveola // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004675 // transmembrane receptor protein serine/threonine kinase activity // inferred from mutant phenotype /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from mutant phenotype 1394668_at BF409960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409960 /DB_XREF=gi:11397935 /DB_XREF=UI-R-CA1-bjy-g-11-0-UI.s1 /CLONE=UI-R-CA1-bjy-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.64047.1 /TIER=ConsEnd /STK=1 /UG=Rn.64047 /UG_TITLE=ESTs, Weakly similar to contactin associated protein-like 2; RIKEN cDNA 5430425M22 gene (Mus musculus) (M.musculus) BF409960 cell adhesion molecule 3 Cadm3 360882 NM_001047103 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // not recorded /// 0007157 // heterophilic cell-cell adhesion // not recorded /// 0008104 // protein localization // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0042803 // protein homodimerization activity // not recorded 1394669_at AI178905 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178905 /DB_XREF=gi:3729543 /DB_XREF=EST222587 /CLONE=RSPBT07 /FEA=EST /CNT=3 /TID=Rn.29262.1 /TIER=ConsEnd /STK=1 /UG=Rn.29262 /UG_TITLE=ESTs AI178905 1394670_at AA859595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859595 /DB_XREF=gi:4230141 /DB_XREF=UI-R-E0-bs-e-05-0-UI.s1 /CLONE=UI-R-E0-bs-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.32133.1 /TIER=ConsEnd /STK=1 /UG=Rn.32133 /UG_TITLE=ESTs AA859595 oligonucleotide/oligosaccharide-binding fold containing 1 Obfc1 294025 NM_001011943 0000723 // telomere maintenance // not recorded /// 0000723 // telomere maintenance // inferred from sequence or structural similarity /// 0000723 // telomere maintenance // inferred from electronic annotation /// 0010833 // telomere maintenance via telomere lengthening // not recorded /// 0010833 // telomere maintenance via telomere lengthening // inferred from sequence or structural similarity /// 0010833 // telomere maintenance via telomere lengthening // inferred from electronic annotation 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0000784 // nuclear chromosome, telomeric region // not recorded /// 0000784 // nuclear chromosome, telomeric region // inferred from sequence or structural similarity /// 0000784 // nuclear chromosome, telomeric region // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0070188 // Stn1-Ten1 complex // inferred from electronic annotation /// 0070188 // Stn1-Ten1 complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // not recorded /// 0003697 // single-stranded DNA binding // inferred from sequence or structural similarity /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043047 // single-stranded telomeric DNA binding // not recorded /// 0043047 // single-stranded telomeric DNA binding // inferred from sequence or structural similarity /// 0043047 // single-stranded telomeric DNA binding // inferred from electronic annotation 1394671_at AI454769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454769 /DB_XREF=gi:4296042 /DB_XREF=UI-R-C2p-qm-a-11-0-UI.s1 /CLONE=UI-R-C2p-qm-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.35185.1 /TIER=ConsEnd /STK=1 /UG=Rn.35185 /UG_TITLE=ESTs AI454769 1394672_at BF414556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414556 /DB_XREF=gi:11402545 /DB_XREF=UI-R-CA0-bpb-a-10-0-UI.s1 /CLONE=UI-R-CA0-bpb-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.62567.1 /TIER=ConsEnd /STK=1 /UG=Rn.62567 /UG_TITLE=ESTs BF414556 1394673_at AI454014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454014 /DB_XREF=gi:4290759 /DB_XREF=UI-R-BT0-qa-b-07-0-UI.s1 /CLONE=UI-R-BT0-qa-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.34564.1 /TIER=ConsEnd /STK=1 /UG=Rn.34564 /UG_TITLE=ESTs, Weakly similar to MYELIN-ASSOCIATED GLYCOPROTEIN PRECURSOR (R.norvegicus) AI454014 similar to Myeloid cell surface antigen CD33 precursor (Siglec-3) LOC687856 687856 XM_001080365 1394674_at BG372056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372056 /DB_XREF=gi:13268593 /DB_XREF=UI-R-CV0-brl-g-08-0-UI.s1 /CLONE=UI-R-CV0-brl-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.66889.1 /TIER=ConsEnd /STK=1 /UG=Rn.66889 /UG_TITLE=ESTs BG372056 1394675_at AI178470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178470 /DB_XREF=gi:4135077 /DB_XREF=EST222144 /CLONE=RPLCR46 /FEA=EST /CNT=3 /TID=Rn.31409.1 /TIER=ConsEnd /STK=1 /UG=Rn.31409 /UG_TITLE=ESTs AI178470 1394676_at BF420216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420216 /DB_XREF=gi:11408205 /DB_XREF=UI-R-BJ2-bpk-c-08-0-UI.s1 /CLONE=UI-R-BJ2-bpk-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.27444.1 /TIER=ConsEnd /STK=1 /UG=Rn.27444 /UG_TITLE=ESTs, Moderately similar to I38079 OXA1 homolog (H.sapiens) BF420216 oxidase assembly 1-like Oxa1l 691393 NM_001168583 0009060 // aerobic respiration // not recorded /// 0032780 // negative regulation of ATPase activity // not recorded /// 0032981 // mitochondrial respiratory chain complex I assembly // not recorded /// 0033615 // mitochondrial proton-transporting ATP synthase complex assembly // not recorded /// 0051205 // protein insertion into membrane // inferred from electronic annotation /// 0051354 // negative regulation of oxidoreductase activity // not recorded 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032592 // integral to mitochondrial membrane // not recorded /// 0043234 // protein complex // not recorded 1394677_at BF284535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284535 /DB_XREF=gi:11215605 /DB_XREF=EST449126 /CLONE=RGIER72 /FEA=EST /CNT=3 /TID=Rn.31242.1 /TIER=ConsEnd /STK=1 /UG=Rn.31242 /UG_TITLE=ESTs BF284535 1394678_at AI411563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411563 /DB_XREF=gi:4255067 /DB_XREF=EST239857 /CLONE=ROVEI20 /FEA=EST /CNT=3 /TID=Rn.43281.1 /TIER=ConsEnd /STK=1 /UG=Rn.43281 /UG_TITLE=ESTs AI411563 FYVE, RhoGEF and PH domain containing 2 Fgd2 309653 NM_001107617 0006915 // apoptosis // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1394679_at BE105933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105933 /DB_XREF=gi:8498035 /DB_XREF=UI-R-BO1-asj-h-06-0-UI.s1 /CLONE=UI-R-BO1-asj-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.50850.1 /TIER=ConsEnd /STK=1 /UG=Rn.50850 /UG_TITLE=ESTs BE105933 1394680_at AW528616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528616 /DB_XREF=gi:7171030 /DB_XREF=UI-R-BO1-ajr-d-09-0-UI.s1 /CLONE=UI-R-BO1-ajr-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.46940.1 /TIER=ConsEnd /STK=1 /UG=Rn.46940 /UG_TITLE=ESTs AW528616 1394681_at AW522526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522526 /DB_XREF=gi:7164911 /DB_XREF=UI-R-BO0-aha-e-03-0-UI.s1 /CLONE=UI-R-BO0-aha-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.45417.1 /TIER=ConsEnd /STK=1 /UG=Rn.45417 /UG_TITLE=ESTs, Highly similar to 2008147B protein RAKc (R.norvegicus) AW522526 aldo-keto reductase family 1, member C-like 1 Akr1cl1 361267 NM_001109900 0055114 // oxidation reduction // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation 1394682_at BF290030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290030 /DB_XREF=gi:11221100 /DB_XREF=EST454621 /CLONE=RGIHM84 /FEA=EST /CNT=3 /TID=Rn.55873.1 /TIER=ConsEnd /STK=1 /UG=Rn.55873 /UG_TITLE=ESTs BF290030 AF4/FMR2 family, member 4 Aff4 303132 NM_001107001 0007286 // spermatid development // not recorded 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1394683_at AW434725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434725 /DB_XREF=gi:6966032 /DB_XREF=UI-R-BJ0p-afz-d-11-0-UI.s1 /CLONE=UI-R-BJ0p-afz-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.66788.1 /TIER=ConsEnd /STK=1 /UG=Rn.66788 /UG_TITLE=ESTs AW434725 1394684_at AA900868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900868 /DB_XREF=gi:4233363 /DB_XREF=UI-R-E0-dk-c-03-0-UI.s1 /CLONE=UI-R-E0-dk-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.40376.1 /TIER=ConsEnd /STK=1 /UG=Rn.40376 /UG_TITLE=ESTs AA900868 1394685_at BF286880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF286880 /DB_XREF=gi:11217950 /DB_XREF=EST451471 /CLONE=RGIFT95 /FEA=EST /CNT=3 /TID=Rn.55388.1 /TIER=ConsEnd /STK=1 /UG=Rn.55388 /UG_TITLE=ESTs BF286880 Nudix (nucleoside diphosphate linked moiety X)-type motif 5 Nudt5 361274 NM_001007733 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // not recorded /// 0009191 // ribonucleoside diphosphate catabolic process // not recorded /// 0009191 // ribonucleoside diphosphate catabolic process // inferred from sequence or structural similarity 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017110 // nucleoside-diphosphatase activity // inferred from electronic annotation /// 0017110 // nucleoside-diphosphatase activity // not recorded /// 0019144 // ADP-sugar diphosphatase activity // not recorded /// 0019144 // ADP-sugar diphosphatase activity // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047631 // ADP-ribose diphosphatase activity // inferred from electronic annotation 1394686_at AI013171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013171 /DB_XREF=gi:4133802 /DB_XREF=EST207846 /CLONE=RSPBH44 /FEA=EST /CNT=3 /TID=Rn.31748.1 /TIER=ConsEnd /STK=1 /UG=Rn.31748 /UG_TITLE=ESTs, Highly similar to XPF_HUMAN DNA-REPAIR PROTEIN COMPLEMENTING XP-F CELL (H.sapiens) AI013171 excision repair cross-complementing rodent repair deficiency, complementation group 4 /// excision repair cross-complementing rodent repair deficiency, complementation group 4-like 1 /// Ercc4 protein-like /// similar to DNA repair endonuclease XPF (DNA excision repair protein ERCC-4) Ercc4 /// Ercc4l1 /// LOC100365348 /// LOC688631 100365348 /// 304719 /// 360465 /// 688631 XM_001067693 /// XM_001077374 /// XM_002727366 /// XM_222534 0000718 // nucleotide-excision repair, DNA damage removal // not recorded /// 0000723 // telomere maintenance // not recorded /// 0000724 // double-strand break repair via homologous recombination // not recorded /// 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006281 // DNA repair // not recorded /// 0006289 // nucleotide-excision repair // not recorded /// 0006295 // nucleotide-excision repair, DNA incision, 3'-to lesion // not recorded /// 0006296 // nucleotide-excision repair, DNA incision, 5'-to lesion // not recorded /// 0009411 // response to UV // not recorded /// 0009650 // UV protection // not recorded /// 0010834 // telomere maintenance via telomere shortening // not recorded /// 0032205 // negative regulation of telomere maintenance // not recorded /// 0033683 // nucleotide-excision repair, DNA incision // not recorded 0000109 // nucleotide-excision repair complex // not recorded /// 0000781 // chromosome, telomeric region // not recorded /// 0000784 // nuclear chromosome, telomeric region // not recorded /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // not recorded /// 0003697 // single-stranded DNA binding // not recorded /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004520 // endodeoxyribonuclease activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0043566 // structure-specific DNA binding // not recorded /// 0047485 // protein N-terminus binding // not recorded 1394687_at BF391105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391105 /DB_XREF=gi:11375952 /DB_XREF=UI-R-CA1-bcd-c-06-0-UI.s1 /CLONE=UI-R-CA1-bcd-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.57390.1 /TIER=ConsEnd /STK=1 /UG=Rn.57390 /UG_TITLE=ESTs BF391105 1394688_at BM388652 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388652 /DB_XREF=gi:18188705 /DB_XREF=UI-R-DZ0-ckm-l-23-0-UI.s1 /CLONE=UI-R-DZ0-ckm-l-23-0-UI /FEA=EST /CNT=3 /TID=Rn.61595.1 /TIER=ConsEnd /STK=1 /UG=Rn.61595 /UG_TITLE=ESTs BM388652 1394689_at BE117217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117217 /DB_XREF=gi:8509327 /DB_XREF=UI-R-BS1-ayh-c-06-0-UI.s1 /CLONE=UI-R-BS1-ayh-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.49034.1 /TIER=ConsEnd /STK=1 /UG=Rn.49034 /UG_TITLE=ESTs BE117217 1394690_at AA900721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900721 /DB_XREF=gi:4233216 /DB_XREF=UI-R-E0-by-h-08-0-UI.s4 /CLONE=UI-R-E0-by-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.32472.1 /TIER=ConsEnd /STK=1 /UG=Rn.32472 /UG_TITLE=ESTs AA900721 1394691_at AA924778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924778 /DB_XREF=gi:4235969 /DB_XREF=UI-R-A1-eb-f-10-0-UI.s1 /CLONE=UI-R-A1-eb-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.33321.1 /TIER=ConsEnd /STK=1 /UG=Rn.33321 /UG_TITLE=ESTs AA924778 forkhead box P1 Foxp1 297480 NM_001034131 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // not recorded /// 0002329 // pre-B cell differentiation // not recorded /// 0002639 // positive regulation of immunoglobulin production // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007519 // skeletal muscle tissue development // not recorded /// 0009790 // embryo development // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0030324 // lung development // not recorded /// 0033152 // immunoglobulin V(D)J recombination // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048745 // smooth muscle tissue development // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // not recorded /// 0055007 // cardiac muscle cell differentiation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1394692_at AA850656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850656 /DB_XREF=gi:2938196 /DB_XREF=EST193424 /CLONE=ROVAJ17 /FEA=EST /CNT=3 /TID=Rn.55549.1 /TIER=ConsEnd /STK=1 /UG=Rn.55549 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) AA850656 Methyl-CpG binding domain protein 4 Mbd4 680915 XM_001059437 /// XM_002726448 0006284 // base-excision repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0008630 // DNA damage response, signal transduction resulting in induction of apoptosis // not recorded /// 0009314 // response to radiation // not recorded /// 0045008 // depyrimidination // not recorded 0000785 // chromatin // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394693_at AW919728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919728 /DB_XREF=gi:8085528 /DB_XREF=EST351032 /CLONE=RGIGG28 /FEA=EST /CNT=3 /TID=Rn.64294.1 /TIER=ConsEnd /STK=1 /UG=Rn.64294 /UG_TITLE=ESTs AW919728 1394694_at AI454646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454646 /DB_XREF=gi:4295182 /DB_XREF=UI-R-C2p-qo-e-07-0-UI.s1 /CLONE=UI-R-C2p-qo-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.35077.1 /TIER=ConsEnd /STK=1 /UG=Rn.35077 /UG_TITLE=ESTs AI454646 1394695_at BE111700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111700 /DB_XREF=gi:8503805 /DB_XREF=UI-R-BJ1-avv-g-07-0-UI.s1 /CLONE=UI-R-BJ1-avv-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.52013.1 /TIER=ConsEnd /STK=1 /UG=Rn.52013 /UG_TITLE=ESTs BE111700 family with sequence similarity 46, member A Fam46a 300870 NM_001106844 1394696_at BF287122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287122 /DB_XREF=gi:11218192 /DB_XREF=EST451713 /CLONE=RGIFZ23 /FEA=EST /CNT=3 /TID=Rn.55414.1 /TIER=ConsEnd /STK=1 /UG=Rn.55414 /UG_TITLE=ESTs BF287122 1394697_at BF391048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391048 /DB_XREF=gi:11375895 /DB_XREF=UI-R-CA1-bcf-e-10-0-UI.s1 /CLONE=UI-R-CA1-bcf-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.13282.1 /TIER=ConsEnd /STK=1 /UG=Rn.13282 /UG_TITLE=ESTs BF391048 similar to KIAA1731 protein RGD1311723 363018 XM_001069542 /// XM_343351 1394698_at AI535431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535431 /DB_XREF=gi:4449566 /DB_XREF=UI-R-C3-sy-a-03-0-UI.s1 /CLONE=UI-R-C3-sy-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.35168.1 /TIER=ConsEnd /STK=1 /UG=Rn.35168 /UG_TITLE=ESTs AI535431 1394699_at BG671896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671896 /DB_XREF=gi:13893995 /DB_XREF=DRNBZC09 /CLONE=DRNBZC09 /FEA=EST /CNT=3 /TID=Rn.39031.1 /TIER=ConsEnd /STK=1 /UG=Rn.39031 /UG_TITLE=ESTs BG671896 Similar to transcription factor ONECUT2 RGD1564677 307376 XM_002725360 /// XM_002728557 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1394700_at AW526895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526895 /DB_XREF=gi:7169309 /DB_XREF=UI-R-BO1-ajf-c-08-0-UI.s1 /CLONE=UI-R-BO1-ajf-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.46350.1 /TIER=ConsEnd /STK=1 /UG=Rn.46350 /UG_TITLE=ESTs AW526895 1394701_at BF290084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290084 /DB_XREF=gi:11221154 /DB_XREF=EST454675 /CLONE=RGIHN57 /FEA=EST /CNT=3 /TID=Rn.55887.1 /TIER=ConsEnd /STK=1 /UG=Rn.55887 /UG_TITLE=ESTs BF290084 1394702_at AI137904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137904 /DB_XREF=gi:3638681 /DB_XREF=UI-R-A1-do-a-10-0-UI.s1 /CLONE=UI-R-A1-do-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.27530.1 /TIER=ConsEnd /STK=1 /UG=Rn.27530 /UG_TITLE=ESTs AI137904 1394703_at BF288414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288414 /DB_XREF=gi:11219484 /DB_XREF=EST453005 /CLONE=RGIGT53 /FEA=EST /CNT=3 /TID=Rn.30626.1 /TIER=ConsEnd /STK=1 /UG=Rn.30626 /UG_TITLE=ESTs BF288414 1394704_at AI409615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409615 /DB_XREF=gi:4253119 /DB_XREF=EST237907 /CLONE=RKIDU67 /FEA=EST /CNT=3 /TID=Rn.56046.1 /TIER=ConsEnd /STK=1 /UG=Rn.56046 /UG_TITLE=ESTs, Highly similar to ML51_HUMAN MLN 51 PROTEIN (H.sapiens) AI409615 cancer susceptibility candidate 3 Casc3 259170 NM_147144 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0008298 // intracellular mRNA localization // inferred from electronic annotation /// 0008298 // intracellular mRNA localization // not recorded /// 0008380 // RNA splicing // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1394705_at BE117266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117266 /DB_XREF=gi:8509371 /DB_XREF=UI-R-BS1-ayh-g-04-0-UI.s1 /CLONE=UI-R-BS1-ayh-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.69463.1 /TIER=ConsEnd /STK=1 /UG=Rn.69463 /UG_TITLE=ESTs BE117266 1394706_at AI044545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044545 /DB_XREF=gi:3291406 /DB_XREF=UI-R-C1-kc-g-11-0-UI.s1 /CLONE=UI-R-C1-kc-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.72610.1 /TIER=ConsEnd /STK=1 /UG=Rn.72610 /UG_TITLE=ESTs AI044545 1394707_at AW533764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533764 /DB_XREF=gi:7176178 /DB_XREF=UI-R-BU0-anh-g-10-0-UI.s1 /CLONE=UI-R-BU0-anh-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.76256.1 /TIER=ConsEnd /STK=1 /UG=Rn.76256 /UG_TITLE=ESTs AW533764 1394708_at BF288532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288532 /DB_XREF=gi:11219602 /DB_XREF=EST453123 /CLONE=RGIGU68 /FEA=EST /CNT=3 /TID=Rn.55612.1 /TIER=ConsEnd /STK=1 /UG=Rn.55612 /UG_TITLE=ESTs BF288532 GA binding protein transcription factor, beta subunit 1-like Gabpb1l 364738 NM_001135015 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1394709_at AI406967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406967 /DB_XREF=gi:4250471 /DB_XREF=EST235255 /CLONE=ROVDW89 /FEA=EST /CNT=3 /TID=Rn.55808.1 /TIER=ConsEnd /STK=1 /UG=Rn.55808 /UG_TITLE=ESTs AI406967 1394710_at AI045510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045510 /DB_XREF=gi:3292329 /DB_XREF=UI-R-C1-kj-g-10-0-UI.s1 /CLONE=UI-R-C1-kj-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.69251.1 /TIER=ConsEnd /STK=1 /UG=Rn.69251 /UG_TITLE=ESTs AI045510 5-azacytidine induced 2 Azi2 316051 NM_001025705 0007249 // I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1394711_at AI549009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549009 /DB_XREF=gi:4466497 /DB_XREF=UI-R-C3-tv-d-09-0-UI.s1 /CLONE=UI-R-C3-tv-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.41854.1 /TIER=ConsEnd /STK=1 /UG=Rn.41854 /UG_TITLE=ESTs AI549009 protein kinase, AMP-activated, gamma 3 non-catalytic subunit Prkag3 301518 NM_001106921 0005978 // glycogen biosynthetic process // not recorded /// 0015758 // glucose transport // not recorded /// 0046320 // regulation of fatty acid oxidation // not recorded 0005829 // cytosol // not recorded /// 0031588 // AMP-activated protein kinase complex // inferred from mutant phenotype 0004679 // AMP-activated protein kinase activity // inferred from mutant phenotype /// 0016301 // kinase activity // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded 1394712_at AW529312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529312 /DB_XREF=gi:7171726 /DB_XREF=UI-R-BT1-akm-e-06-0-UI.s1 /CLONE=UI-R-BT1-akm-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.47155.1 /TIER=ConsEnd /STK=1 /UG=Rn.47155 /UG_TITLE=ESTs AW529312 1394713_at AI408200 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408200 /DB_XREF=gi:4251704 /DB_XREF=EST236490 /CLONE=ROVEJ11 /FEA=EST /CNT=3 /TID=Rn.43606.1 /TIER=ConsEnd /STK=1 /UG=Rn.43606 /UG_TITLE=ESTs AI408200 1394714_at BF386268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386268 /DB_XREF=gi:11371092 /DB_XREF=UI-R-CA1-bbc-e-11-0-UI.s1 /CLONE=UI-R-CA1-bbc-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.59700.1 /TIER=ConsEnd /STK=1 /UG=Rn.59700 /UG_TITLE=ESTs, Moderately similar to CALCIUM-TRANSPORTING ATPASE PLASMA MEMBRANE, BRAIN ISOFORM 1 (R.norvegicus) BF386268 ATPase, Ca++ transporting, plasma membrane 1 Atp2b1 29598 NM_053311 0003407 // neural retina development // inferred from expression pattern /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0009409 // response to cold // inferred from expression pattern /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0070588 // calcium ion transmembrane transport // inferred from mutant phenotype /// 0071305 // cellular response to vitamin D // inferred from expression pattern /// 0071386 // cellular response to corticosterone stimulus // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045177 // apical part of cell // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015085 // calcium ion transmembrane transporter activity // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1394715_at AI406925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406925 /DB_XREF=gi:4250429 /DB_XREF=EST235213 /CLONE=ROVDV06 /FEA=EST /CNT=3 /TID=Rn.43403.1 /TIER=ConsEnd /STK=1 /UG=Rn.43403 /UG_TITLE=ESTs, Weakly similar to YM68_CAEEL Hypothetical helicase K12H4.8 in chromosome III (C.elegans) AI406925 dicer 1, ribonuclease type III Dicer1 299284 XM_001068155 /// XM_001069041 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0006396 // RNA processing // inferred from electronic annotation /// 0006396 // RNA processing // not recorded /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0019827 // stem cell maintenance // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030422 // production of siRNA involved in RNA interference // inferred from electronic annotation /// 0030422 // production of siRNA involved in RNA interference // not recorded /// 0030423 // targeting of mRNA for destruction involved in RNA interference // inferred from electronic annotation /// 0030423 // targeting of mRNA for destruction involved in RNA interference // not recorded /// 0031054 // pre-microRNA processing // inferred from electronic annotation /// 0031054 // pre-microRNA processing // not recorded /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0035196 // production of miRNAs involved in gene silencing by miRNA // not recorded /// 0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // not recorded /// 0055013 // cardiac muscle cell development // inferred from electronic annotation /// 0055013 // cardiac muscle cell development // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // inferred from direct assay /// 0016442 // RNA-induced silencing complex // inferred from electronic annotation /// 0016442 // RNA-induced silencing complex // not recorded /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // not recorded /// 0004525 // ribonuclease III activity // inferred from electronic annotation /// 0004525 // ribonuclease III activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394716_at AI011137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011137 /DB_XREF=gi:3224969 /DB_XREF=EST205588 /CLONE=ROVAQ01 /FEA=EST /CNT=3 /TID=Rn.55587.1 /TIER=ConsEnd /STK=1 /UG=Rn.55587 /UG_TITLE=ESTs AI011137 1394717_at BE106041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106041 /DB_XREF=gi:8498143 /DB_XREF=UI-R-BO1-ask-b-12-0-UI.s1 /CLONE=UI-R-BO1-ask-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.28972.1 /TIER=ConsEnd /STK=1 /UG=Rn.28972 /UG_TITLE=ESTs, Moderately similar to Y210_HUMAN HYPOTHETICAL PROTEIN KIAA0210 (H.sapiens) BE106041 TBC1 domain family, member 5 Tbc1d5 501088 NM_001134762 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394718_at BF396080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396080 /DB_XREF=gi:11381052 /DB_XREF=UI-R-CA1-bcb-b-02-0-UI.s1 /CLONE=UI-R-CA1-bcb-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.58517.1 /TIER=ConsEnd /STK=1 /UG=Rn.58517 /UG_TITLE=ESTs BF396080 1394719_at AI071992 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071992 /DB_XREF=gi:3398186 /DB_XREF=UI-R-C2-nd-b-02-0-UI.s1 /CLONE=UI-R-C2-nd-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.43541.1 /TIER=ConsEnd /STK=1 /UG=Rn.43541 /UG_TITLE=ESTs AI071992 1394720_at AI577495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577495 /DB_XREF=gi:4561871 /DB_XREF=UI-R-Y0-vj-e-05-0-UI.s1 /CLONE=UI-R-Y0-vj-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.48934.1 /TIER=ConsEnd /STK=1 /UG=Rn.48934 /UG_TITLE=ESTs AI577495 T-cell acute lymphocytic leukemia 1 Tal1 313507 NM_001107958 0010551 // regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0030097 // hemopoiesis // not recorded /// 0030218 // erythrocyte differentiation // not recorded /// 0045165 // cell fate commitment // not recorded /// 0045648 // positive regulation of erythrocyte differentiation // not recorded 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0033193 // Lsd1/2 complex // not recorded /// 0043234 // protein complex // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0019899 // enzyme binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded 1394721_at BF412697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412697 /DB_XREF=gi:11400686 /DB_XREF=UI-R-BT1-bnt-a-11-0-UI.s1 /CLONE=UI-R-BT1-bnt-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.62145.1 /TIER=ConsEnd /STK=1 /UG=Rn.62145 /UG_TITLE=ESTs BF412697 bromodomain adjacent to zinc finger domain, 2A Baz2a 304601 NM_001107158 0000183 // chromatin silencing at rDNA // not recorded /// 0006306 // DNA methylation // not recorded /// 0016575 // histone deacetylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005677 // chromatin silencing complex // not recorded /// 0005730 // nucleolus // not recorded /// 0033553 // rDNA heterochromatin // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070577 // histone acetyl-lysine binding // not recorded 1394722_at AA964121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964121 /DB_XREF=gi:4278997 /DB_XREF=UI-R-C0-gt-h-01-0-UI.s1 /CLONE=UI-R-C0-gt-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.40354.1 /TIER=ConsEnd /STK=1 /UG=Rn.40354 /UG_TITLE=ESTs AA964121 mitochondrial ribosomal protein L17 Mrpl17 171061 NM_133539 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded 1394723_at BE113290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113290 /DB_XREF=gi:8505435 /DB_XREF=UI-R-BJ1-awe-b-05-0-UI.s1 /CLONE=UI-R-BJ1-awe-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.48996.1 /TIER=ConsEnd /STK=1 /UG=Rn.48996 /UG_TITLE=ESTs, Weakly similar to AF10_MOUSE AF-10 PROTEIN (M.musculus) BE113290 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 Mllt10 361285 NM_001012162 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1394724_at BE109084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109084 /DB_XREF=gi:8501189 /DB_XREF=UI-R-BS1-azc-g-07-0-UI.s1 /CLONE=UI-R-BS1-azc-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.51666.1 /TIER=ConsEnd /STK=1 /UG=Rn.51666 /UG_TITLE=ESTs, Weakly similar to transcription elongation factor A (SII), 2 (Rattus norvegicus) (R.norvegicus) BE109084 transcription elongation factor A (SII) 1 Tcea1 362479 NM_001025735 0006350 // transcription // inferred from electronic annotation /// 0006354 // RNA elongation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003711 // transcription elongation regulator activity // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1394725_at BE121209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121209 /DB_XREF=gi:8513314 /DB_XREF=UI-R-CA0-bas-c-08-0-UI.s1 /CLONE=UI-R-CA0-bas-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.49027.1 /TIER=ConsEnd /STK=1 /UG=Rn.49027 /UG_TITLE=ESTs BE121209 1394726_at AI412564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412564 /DB_XREF=gi:4256068 /DB_XREF=EST240863 /CLONE=RBRDJ49 /FEA=EST /CNT=3 /TID=Rn.43549.1 /TIER=ConsEnd /STK=1 /UG=Rn.43549 /UG_TITLE=ESTs AI412564 1394727_at AI407942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407942 /DB_XREF=gi:4251446 /DB_XREF=EST236232 /CLONE=ROVEE68 /FEA=EST /CNT=3 /TID=Rn.43798.1 /TIER=ConsEnd /STK=1 /UG=Rn.43798 /UG_TITLE=ESTs AI407942 1394728_at AI407012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407012 /DB_XREF=gi:4250516 /DB_XREF=EST235300 /CLONE=ROVDV21 /FEA=EST /CNT=3 /TID=Rn.56082.1 /TIER=ConsEnd /STK=1 /UG=Rn.56082 /UG_TITLE=ESTs AI407012 1394729_at AI714037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI714037 /DB_XREF=gi:5017837 /DB_XREF=UI-R-AF1-aar-g-07-0-UI.s1 /CLONE=UI-R-AF1-aar-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.44711.1 /TIER=ConsEnd /STK=1 /UG=Rn.44711 /UG_TITLE=ESTs AI714037 1394730_at BF289090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289090 /DB_XREF=gi:11220160 /DB_XREF=EST453681 /CLONE=RGIHB01 /FEA=EST /CNT=3 /TID=Rn.55702.1 /TIER=ConsEnd /STK=1 /UG=Rn.55702 /UG_TITLE=ESTs, Moderately similar to GTM1 RAT GLUTATHIONE S-TRANSFERASE YB1 (R.norvegicus) BF289090 glutathione S-transferase, mu 6-like Gstm6l 295362 NM_001106464 0008152 // metabolic process // inferred from electronic annotation 0004364 // glutathione transferase activity // inferred from electronic annotation 1394731_at AI547718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547718 /DB_XREF=gi:4465206 /DB_XREF=UI-R-C3-sj-a-01-0-UI.s1 /CLONE=UI-R-C3-sj-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.34086.1 /TIER=ConsEnd /STK=1 /UG=Rn.34086 /UG_TITLE=ESTs AI547718 casein kinase 1, gamma 3 Csnk1g3 64823 NM_022855 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0001948 // glycoprotein binding // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0051219 // phosphoprotein binding // inferred from direct assay 1394732_at BF289237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289237 /DB_XREF=gi:11220307 /DB_XREF=EST453828 /CLONE=RGIHC58 /FEA=EST /CNT=3 /TID=Rn.55738.1 /TIER=ConsEnd /STK=1 /UG=Rn.55738 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) BF289237 1394733_at AW527528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527528 /DB_XREF=gi:7169942 /DB_XREF=UI-R-BO1-ajv-c-11-0-UI.s1 /CLONE=UI-R-BO1-ajv-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.64188.1 /TIER=ConsEnd /STK=1 /UG=Rn.64188 /UG_TITLE=ESTs AW527528 1394734_at BE120590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120590 /DB_XREF=gi:8512695 /DB_XREF=UI-R-CA0-bav-c-10-0-UI.s1 /CLONE=UI-R-CA0-bav-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.57036.1 /TIER=ConsEnd /STK=1 /UG=Rn.57036 /UG_TITLE=ESTs BE120590 acyl-Coenzyme A binding domain containing 3 Acbd3 289312 NM_182843 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000062 // acyl-CoA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394735_at BF409552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409552 /DB_XREF=gi:11397527 /DB_XREF=UI-R-CA1-bll-f-06-0-UI.s1 /CLONE=UI-R-CA1-bll-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.48022.1 /TIER=ConsEnd /STK=1 /UG=Rn.48022 /UG_TITLE=ESTs BF409552 cation channel, sperm associated 2 Catsper2 366174 NM_001012220 0001539 // ciliary or flagellar motility // inferred from electronic annotation /// 0001539 // ciliary or flagellar motility // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0009566 // fertilization // inferred from electronic annotation /// 0009566 // fertilization // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030317 // sperm motility // inferred from electronic annotation /// 0030317 // sperm motility // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0009434 // microtubule-based flagellum // inferred from electronic annotation /// 0009434 // microtubule-based flagellum // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019861 // flagellum // inferred from electronic annotation /// 0020017 // flagellar membrane // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394736_at BE106093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106093 /DB_XREF=gi:8498195 /DB_XREF=UI-R-BO1-ask-h-02-0-UI.s1 /CLONE=UI-R-BO1-ask-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.68884.1 /TIER=ConsEnd /STK=1 /UG=Rn.68884 /UG_TITLE=ESTs BE106093 popeye domain containing 2 Popdc2 360718 NM_199113 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded 1394737_at BE108874 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108874 /DB_XREF=gi:8500979 /DB_XREF=UI-R-BS1-ayz-d-06-0-UI.s1 /CLONE=UI-R-BS1-ayz-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.53930.1 /TIER=ConsEnd /STK=1 /UG=Rn.53930 /UG_TITLE=ESTs BE108874 similar to CG9752-PA RGD1311345 361201 NM_001173436 /// XM_001067219 /// XM_341483 1394738_at AW531516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531516 /DB_XREF=gi:7173930 /DB_XREF=UI-R-BO1-aji-h-05-0-UI.s1 /CLONE=UI-R-BO1-aji-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.47738.1 /TIER=ConsEnd /STK=1 /UG=Rn.47738 /UG_TITLE=ESTs AW531516 1394739_at BE102817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102817 /DB_XREF=gi:8494916 /DB_XREF=UI-R-BT1-aqt-f-03-0-UI.s1 /CLONE=UI-R-BT1-aqt-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.49992.1 /TIER=ConsEnd /STK=1 /UG=Rn.49992 /UG_TITLE=ESTs BE102817 1394740_at AA850678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850678 /DB_XREF=gi:2938218 /DB_XREF=EST193446 /CLONE=ROVAJ40 /FEA=EST /CNT=3 /TID=Rn.55550.1 /TIER=ConsEnd /STK=1 /UG=Rn.55550 /UG_TITLE=ESTs AA850678 1394741_at AI409455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409455 /DB_XREF=gi:4252959 /DB_XREF=EST237747 /CLONE=RKIDV78 /FEA=EST /CNT=3 /TID=Rn.63854.1 /TIER=ConsEnd /STK=1 /UG=Rn.63854 /UG_TITLE=ESTs AI409455 heterogeneous nuclear ribonucleoprotein A3 Hnrnpa3 362152 NM_001111294 /// NM_001111295 /// NM_198132 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0051028 // mRNA transport // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from mutant phenotype /// 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030530 // heterogeneous nuclear ribonucleoprotein complex // inferred from mutant phenotype 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0051033 // RNA transmembrane transporter activity // inferred from mutant phenotype 1394742_at AW534107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534107 /DB_XREF=gi:7176521 /DB_XREF=UI-R-C4-alp-c-04-0-UI.s1 /CLONE=UI-R-C4-alp-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.29378.1 /TIER=ConsEnd /STK=1 /UG=Rn.29378 /UG_TITLE=ESTs AW534107 1394743_at AI234230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234230 /DB_XREF=gi:3818110 /DB_XREF=EST230918 /CLONE=RLUCY17 /FEA=EST /CNT=3 /TID=Rn.41576.1 /TIER=ConsEnd /STK=1 /UG=Rn.41576 /UG_TITLE=ESTs AI234230 hypothetical LOC100363228 LOC100363228 100363228 XR_086181 1394744_at AI556327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556327 /DB_XREF=gi:4488690 /DB_XREF=UI-R-C2p-rg-b-04-0-UI.s1 /CLONE=UI-R-C2p-rg-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.38212.1 /TIER=ConsEnd /STK=1 /UG=Rn.38212 /UG_TITLE=ESTs AI556327 Eukaryotic translation elongation factor 1 gamma Eef1g 293725 NM_001004223 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0006414 // translational elongation // inferred from electronic annotation /// 0009615 // response to virus // not recorded 0005829 // cytosol // not recorded /// 0005853 // eukaryotic translation elongation factor 1 complex // inferred from electronic annotation 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394745_at AA850950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850950 /DB_XREF=gi:2938490 /DB_XREF=EST193718 /CLONE=ROVAO75 /FEA=EST /CNT=3 /TID=Rn.38956.1 /TIER=ConsEnd /STK=1 /UG=Rn.38956 /UG_TITLE=ESTs AA850950 Family with sequence similarity 46, member A Fam46a 300870 NM_001106844 1394746_at AI180352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180352 /DB_XREF=gi:3730990 /DB_XREF=EST224096 /CLONE=RSPCV21 /FEA=EST /CNT=3 /TID=Rn.44106.1 /TIER=ConsEnd /STK=1 /UG=Rn.44106 /UG_TITLE=ESTs, Highly similar to guanine nucleotide exchange factor p532 (H.sapiens) AI180352 1394747_at BE113012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113012 /DB_XREF=gi:8505117 /DB_XREF=UI-R-BJ1-awf-d-05-0-UI.s1 /CLONE=UI-R-BJ1-awf-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.30322.1 /TIER=ConsEnd /STK=1 /UG=Rn.30322 /UG_TITLE=ESTs BE113012 Ankyrin repeat domain 1 (cardiac muscle) Ankrd1 27064 NM_013220 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // traceable author statement 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0031674 // I band // inferred from electronic annotation /// 0031674 // I band // not recorded 0003712 // transcription cofactor activity // traceable author statement /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394748_at BF288156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288156 /DB_XREF=gi:11219226 /DB_XREF=EST452747 /CLONE=RGIGQ21 /FEA=EST /CNT=3 /TID=Rn.55508.1 /TIER=ConsEnd /STK=1 /UG=Rn.55508 /UG_TITLE=ESTs BF288156 1394749_at AW920947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920947 /DB_XREF=gi:8086765 /DB_XREF=EST352251 /CLONE=RGIHK14 /FEA=EST /CNT=3 /TID=Rn.55811.1 /TIER=ConsEnd /STK=1 /UG=Rn.55811 /UG_TITLE=ESTs, Weakly similar to Yeast YHX1 like (Caenorhabditis elegans) (C.elegans) AW920947 ATG7 autophagy related 7 homolog (S. cerevisiae) Atg7 312647 NM_001012097 0001889 // liver development // not recorded /// 0006497 // protein lipidation // inferred from electronic annotation /// 0006497 // protein lipidation // not recorded /// 0006520 // cellular amino acid metabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0006914 // autophagy // inferred from expression pattern /// 0006914 // autophagy // not recorded /// 0006996 // organelle organization // not recorded /// 0007628 // adult walking behavior // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0021680 // cerebellar Purkinje cell layer development // not recorded /// 0021860 // pyramidal neuron development // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0030163 // protein catabolic process // not recorded /// 0031175 // neuron projection development // not recorded /// 0031396 // regulation of protein ubiquitination // not recorded /// 0031401 // positive regulation of protein modification process // inferred from electronic annotation /// 0031401 // positive regulation of protein modification process // not recorded /// 0032446 // protein modification by small protein conjugation // not recorded /// 0042594 // response to starvation // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0050877 // neurological system process // not recorded /// 0055013 // cardiac muscle cell development // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004839 // ubiquitin activating enzyme activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019778 // APG12 activating enzyme activity // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1394750_at AW433665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433665 /DB_XREF=gi:6964972 /DB_XREF=UI-R-BJ0p-afp-d-05-0-UI.s1 /CLONE=UI-R-BJ0p-afp-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.54261.1 /TIER=ConsEnd /STK=1 /UG=Rn.54261 /UG_TITLE=ESTs, Weakly similar to JG0164 LIM protein, FHL4 - mouse (M.musculus) AW433665 four and a half LIM domains 1 Fhl1 25177 NM_001033926 /// NM_145669 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1394751_at AI577528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577528 /DB_XREF=gi:4561904 /DB_XREF=UI-R-Y0-vj-h-04-0-UI.s1 /CLONE=UI-R-Y0-vj-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.54795.1 /TIER=ConsEnd /STK=1 /UG=Rn.54795 /UG_TITLE=ESTs AI577528 1394752_at AI176826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176826 /DB_XREF=gi:3727464 /DB_XREF=EST220425 /CLONE=ROVBX34 /FEA=EST /CNT=3 /TID=Rn.29036.1 /TIER=ConsEnd /STK=1 /UG=Rn.29036 /UG_TITLE=ESTs AI176826 1394753_at BF288394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288394 /DB_XREF=gi:11219464 /DB_XREF=EST452985 /CLONE=RGIGT32 /FEA=EST /CNT=3 /TID=Rn.55577.1 /TIER=ConsEnd /STK=1 /UG=Rn.55577 /UG_TITLE=ESTs BF288394 hypothetical protein LOC689621 LOC689621 689621 XM_001071401 /// XM_002727102 1394754_at AW920803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920803 /DB_XREF=gi:8086618 /DB_XREF=EST352107 /CLONE=RGIHC70 /FEA=EST /CNT=3 /TID=Rn.55743.1 /TIER=ConsEnd /STK=1 /UG=Rn.55743 /UG_TITLE=ESTs AW920803 1394755_at BG381432 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381432 /DB_XREF=gi:13305904 /DB_XREF=UI-R-CT0-buj-c-04-0-UI.s1 /CLONE=UI-R-CT0-buj-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.41439.1 /TIER=ConsEnd /STK=1 /UG=Rn.41439 /UG_TITLE=ESTs BG381432 1394756_at AA955494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955494 /DB_XREF=gi:4237848 /DB_XREF=UI-R-A1-ex-g-07-0-UI.s1 /CLONE=UI-R-A1-ex-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.32780.1 /TIER=ConsEnd /STK=1 /UG=Rn.32780 /UG_TITLE=ESTs AA955494 1394757_at BF288751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288751 /DB_XREF=gi:11219731 /DB_XREF=EST453252 /CLONE=RGIGW05 /FEA=EST /CNT=3 /TID=Rn.55634.1 /TIER=ConsEnd /STK=1 /UG=Rn.55634 /UG_TITLE=ESTs BF288751 1394758_at BF402131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402131 /DB_XREF=gi:11390070 /DB_XREF=UI-R-CA1-bim-h-05-0-UI.s1 /CLONE=UI-R-CA1-bim-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.55697.1 /TIER=ConsEnd /STK=1 /UG=Rn.55697 /UG_TITLE=ESTs BF402131 1394759_at BF289157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289157 /DB_XREF=gi:11220227 /DB_XREF=EST453748 /CLONE=RGIHB73 /FEA=EST /CNT=3 /TID=Rn.42963.1 /TIER=ConsEnd /STK=1 /UG=Rn.42963 /UG_TITLE=ESTs, Weakly similar to S12207 hypothetical protein (M.musculus) BF289157 1394760_at BF387238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387238 /DB_XREF=gi:11372062 /DB_XREF=UI-R-CA1-bbl-b-09-0-UI.s1 /CLONE=UI-R-CA1-bbl-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.43444.1 /TIER=ConsEnd /STK=1 /UG=Rn.43444 /UG_TITLE=ESTs BF387238 unc-79 homolog (C. elegans) Unc79 314401 XM_001067752 /// XM_002726761 /// XM_002729723 /// XM_234477 1394761_at BE114260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114260 /DB_XREF=gi:8506365 /DB_XREF=UI-R-BJ1-awk-b-05-0-UI.s1 /CLONE=UI-R-BJ1-awk-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.52342.1 /TIER=ConsEnd /STK=1 /UG=Rn.52342 /UG_TITLE=ESTs BE114260 Rho GTPase activating protein 42 Arhgap42 500943 XM_001073215 /// XM_002727013 /// XM_002729869 /// XM_576354 0007165 // signal transduction // inferred from electronic annotation /// 0046847 // filopodium assembly // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0008093 // cytoskeletal adaptor activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation 1394762_at BF286921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF286921 /DB_XREF=gi:11217991 /DB_XREF=EST451512 /CLONE=RGIFU51 /FEA=EST /CNT=3 /TID=Rn.55393.1 /TIER=ConsEnd /STK=1 /UG=Rn.55393 /UG_TITLE=ESTs BF286921 1394763_at AI234944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234944 /DB_XREF=gi:3828450 /DB_XREF=EST231506 /CLONE=ROVCJ89 /FEA=EST /CNT=3 /TID=Rn.55719.1 /TIER=ConsEnd /STK=1 /UG=Rn.55719 /UG_TITLE=ESTs AI234944 Hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit Hadha 170670 NM_130826 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from direct assay /// 0006635 // fatty acid beta-oxidation // not recorded /// 0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0016507 // fatty acid beta-oxidation multienzyme complex // inferred from direct assay /// 0016507 // fatty acid beta-oxidation multienzyme complex // traceable author statement /// 0016507 // fatty acid beta-oxidation multienzyme complex // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded 0000062 // acyl-CoA binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // inferred from direct assay /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // inferred from mutant phenotype /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0003988 // acetyl-CoA C-acyltransferase activity // inferred from direct assay /// 0004300 // enoyl-CoA hydratase activity // inferred from direct assay /// 0004300 // enoyl-CoA hydratase activity // inferred from mutant phenotype /// 0004300 // enoyl-CoA hydratase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016508 // long-chain-enoyl-CoA hydratase activity // inferred from direct assay /// 0016509 // long-chain-3-hydroxyacyl-CoA dehydrogenase activity // inferred from direct assay /// 0016509 // long-chain-3-hydroxyacyl-CoA dehydrogenase activity // not recorded /// 0016509 // long-chain-3-hydroxyacyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from direct assay 1394764_at AW531730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531730 /DB_XREF=gi:7174144 /DB_XREF=UI-R-C4-alk-d-10-0-UI.s1 /CLONE=UI-R-C4-alk-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.26715.1 /TIER=ConsEnd /STK=1 /UG=Rn.26715 /UG_TITLE=ESTs AW531730 lemur tyrosine kinase 2 Lmtk2 304286 NM_001137641 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // not recorded 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004864 // phosphoprotein phosphatase inhibitor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1394765_at BF397199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397199 /DB_XREF=gi:11382182 /DB_XREF=UI-R-BS2-bej-e-05-0-UI.s1 /CLONE=UI-R-BS2-bej-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.45235.1 /TIER=ConsEnd /STK=1 /UG=Rn.45235 /UG_TITLE=ESTs BF397199 1394766_at AW534610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534610 /DB_XREF=gi:7177024 /DB_XREF=UI-R-C4-alt-f-07-0-UI.s1 /CLONE=UI-R-C4-alt-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.74622.1 /TIER=ConsEnd /STK=1 /UG=Rn.74622 /UG_TITLE=ESTs AW534610 1394767_at BF396817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396817 /DB_XREF=gi:11381798 /DB_XREF=UI-R-BS2-bev-e-02-0-UI.s1 /CLONE=UI-R-BS2-bev-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.32567.1 /TIER=ConsEnd /STK=1 /UG=Rn.32567 /UG_TITLE=ESTs BF396817 1394768_at AW921061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921061 /DB_XREF=gi:8086880 /DB_XREF=EST352365 /CLONE=RGIHM86 /FEA=EST /CNT=3 /TID=Rn.55874.1 /TIER=ConsEnd /STK=1 /UG=Rn.55874 /UG_TITLE=ESTs AW921061 1394769_at AI554998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI554998 /DB_XREF=gi:4487361 /DB_XREF=UI-R-C2p-qu-e-06-0-UI.s1 /CLONE=UI-R-C2p-qu-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.38365.1 /TIER=ConsEnd /STK=1 /UG=Rn.38365 /UG_TITLE=ESTs AI554998 1394770_at AI556187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556187 /DB_XREF=gi:4488550 /DB_XREF=UI-R-C2p-rd-f-03-0-UI.s1 /CLONE=UI-R-C2p-rd-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.72591.1 /TIER=ConsEnd /STK=1 /UG=Rn.72591 /UG_TITLE=ESTs, Weakly similar to PK3G_RAT Phosphatidylinositol 3-kinase C2 domain-containing gamma polypeptide (Phosphoinositide 3-Kinase-C2-gamma) (PtdIns-3-kinase C2 gamma) (PI3K-C2gamma) (R.norvegicus) AI556187 phosphoinositide-3-kinase, class 2, beta polypeptide Pik3c2b 289021 NM_001105951 0007154 // cell communication // inferred from electronic annotation /// 0043491 // protein kinase B signaling cascade // not recorded /// 0046834 // lipid phosphorylation // not recorded /// 0046854 // phosphoinositide phosphorylation // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation 0005942 // phosphoinositide 3-kinase complex // inferred from electronic annotation /// 0030139 // endocytic vesicle // not recorded 0001727 // lipid kinase activity // not recorded /// 0004428 // inositol or phosphatidylinositol kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1394771_at BM391898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391898 /DB_XREF=gi:18191951 /DB_XREF=UI-R-DM1-ckc-b-01-0-UI.s2 /CLONE=UI-R-DM1-ckc-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.53198.1 /TIER=ConsEnd /STK=1 /UG=Rn.53198 /UG_TITLE=ESTs BM391898 1394772_at AW521307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521307 /DB_XREF=gi:7163685 /DB_XREF=UI-R-BO0-agl-a-07-0-UI.s1 /CLONE=UI-R-BO0-agl-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.76367.1 /TIER=ConsEnd /STK=1 /UG=Rn.76367 /UG_TITLE=ESTs AW521307 1394773_at BG378318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378318 /DB_XREF=gi:13302790 /DB_XREF=UI-R-CV1-bvq-f-10-0-UI.s1 /CLONE=UI-R-CV1-bvq-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.76781.1 /TIER=ConsEnd /STK=1 /UG=Rn.76781 /UG_TITLE=ESTs BG378318 1394774_at BI288920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288920 /DB_XREF=gi:14945967 /DB_XREF=UI-R-DK0-cdi-b-04-0-UI.s1 /CLONE=UI-R-DK0-cdi-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.72428.1 /TIER=ConsEnd /STK=1 /UG=Rn.72428 /UG_TITLE=ESTs, Highly similar to T00365 hypothetical protein KIAA0670 (H.sapiens) BI288920 apoptotic chromatin condensation inducer 1 Acin1 305884 NM_001170468 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // not recorded /// 0030263 // apoptotic chromosome condensation // inferred from electronic annotation /// 0030263 // apoptotic chromosome condensation // not recorded /// 0045657 // positive regulation of monocyte differentiation // inferred from electronic annotation /// 0045657 // positive regulation of monocyte differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394775_at AI547644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547644 /DB_XREF=gi:4465132 /DB_XREF=UI-R-C3-sz-f-07-0-UI.s1 /CLONE=UI-R-C3-sz-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.42025.1 /TIER=ConsEnd /STK=1 /UG=Rn.42025 /UG_TITLE=ESTs AI547644 1394776_at AA899386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899386 /DB_XREF=gi:4231883 /DB_XREF=UI-R-E0-cs-b-05-0-UI.s2 /CLONE=UI-R-E0-cs-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.32385.1 /TIER=ConsEnd /STK=1 /UG=Rn.32385 /UG_TITLE=ESTs AA899386 0006508 // proteolysis // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1394777_at AI228857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228857 /DB_XREF=gi:4135392 /DB_XREF=EST225552 /CLONE=RBRDA49 /FEA=EST /CNT=3 /TID=Rn.55348.1 /TIER=ConsEnd /STK=1 /UG=Rn.55348 /UG_TITLE=ESTs AI228857 1394778_at BE116111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116111 /DB_XREF=gi:8508216 /DB_XREF=UI-R-BS1-axz-e-10-0-UI.s1 /CLONE=UI-R-BS1-axz-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.49163.1 /TIER=ConsEnd /STK=1 /UG=Rn.49163 /UG_TITLE=ESTs BE116111 1394779_at AI717218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717218 /DB_XREF=gi:5034474 /DB_XREF=UI-R-Y0-acm-e-08-0-UI.s1 /CLONE=UI-R-Y0-acm-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.63763.1 /TIER=ConsEnd /STK=1 /UG=Rn.63763 /UG_TITLE=ESTs, Moderately similar to S14234 hypothetical protein - mouse (M.musculus) AI717218 1394780_at BF287832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287832 /DB_XREF=gi:11218902 /DB_XREF=EST452423 /CLONE=RGIGK65 /FEA=EST /CNT=3 /TID=Rn.61098.1 /TIER=ConsEnd /STK=1 /UG=Rn.61098 /UG_TITLE=ESTs BF287832 1394781_at AA859755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859755 /DB_XREF=gi:4230298 /DB_XREF=UI-R-E0-bx-c-10-0-UI.s1 /CLONE=UI-R-E0-bx-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.32141.1 /TIER=ConsEnd /STK=1 /UG=Rn.32141 /UG_TITLE=ESTs AA859755 1394782_at AI547795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547795 /DB_XREF=gi:4465283 /DB_XREF=UI-R-C3-sj-h-08-0-UI.s1 /CLONE=UI-R-C3-sj-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.41612.1 /TIER=ConsEnd /STK=1 /UG=Rn.41612 /UG_TITLE=ESTs AI547795 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1394783_at BF564151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564151 /DB_XREF=gi:11673881 /DB_XREF=UI-R-C4-ali-a-12-0-UI.r1 /CLONE=UI-R-C4-ali-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.64474.1 /TIER=ConsEnd /STK=1 /UG=Rn.64474 /UG_TITLE=ESTs BF564151 1394784_at BF522436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522436 /DB_XREF=gi:11630403 /DB_XREF=UI-R-C3-tz-h-12-0-UI.r1 /CLONE=UI-R-C3-tz-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.43182.1 /TIER=ConsEnd /STK=1 /UG=Rn.43182 /UG_TITLE=ESTs, Weakly similar to MAPB_HUMAN MICROTUBULE-ASSOCIATED PROTEIN 1B (H.sapiens) BF522436 ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) Esf1 366203 NM_001100771 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 1394785_at BE329290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329290 /DB_XREF=gi:9203066 /DB_XREF=hq39a03.x1 /CLONE=IMAGE:3121708 /FEA=EST /CNT=3 /TID=Rn.54028.1 /TIER=ConsEnd /STK=1 /UG=Rn.54028 /UG_TITLE=ESTs BE329290 1394786_at AW526631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526631 /DB_XREF=gi:7169045 /DB_XREF=UI-R-BO1-ajd-c-03-0-UI.s1 /CLONE=UI-R-BO1-ajd-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.46267.1 /TIER=ConsEnd /STK=1 /UG=Rn.46267 /UG_TITLE=ESTs AW526631 sortilin-related receptor, LDLR class A repeats-containing Sorl1 300652 NM_053519 /// XM_001065506 /// XM_217115 0008283 // cell proliferation // inferred from expression pattern /// 0016477 // cell migration // inferred from mutant phenotype 0005771 // multivesicular body // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay 0030169 // low-density lipoprotein binding // not recorded 1394787_at AI407480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407480 /DB_XREF=gi:4250984 /DB_XREF=EST235769 /CLONE=ROVDS95 /FEA=EST /CNT=3 /TID=Rn.55797.1 /TIER=ConsEnd /STK=1 /UG=Rn.55797 /UG_TITLE=ESTs AI407480 Similar to hypothetical protein MGC9912 RGD1309138 366619 NM_001108981 0019478 // D-amino acid catabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation 1394788_at AA900045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900045 /DB_XREF=gi:4232535 /DB_XREF=UI-R-E0-dh-h-03-0-UI.s1 /CLONE=UI-R-E0-dh-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.38960.1 /TIER=ConsEnd /STK=1 /UG=Rn.38960 /UG_TITLE=ESTs AA900045 1394789_at AI178097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178097 /DB_XREF=gi:3728735 /DB_XREF=EST221756 /CLONE=RPLCL74 /FEA=EST /CNT=3 /TID=Rn.43120.1 /TIER=ConsEnd /STK=1 /UG=Rn.43120 /UG_TITLE=ESTs AI178097 1394790_at AW921911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921911 /DB_XREF=gi:8087735 /DB_XREF=EST353215 /CLONE=RGIIJ19 /FEA=EST /CNT=3 /TID=Rn.44055.1 /TIER=ConsEnd /STK=1 /UG=Rn.44055 /UG_TITLE=ESTs AW921911 chloride channel 6 Clcn6 295586 NM_001106479 0006821 // chloride transport // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005247 // voltage-gated chloride channel activity // inferred from electronic annotation 1394791_at AI138038 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI138038 /DB_XREF=gi:3638815 /DB_XREF=UI-R-C2p-oi-f-08-0-UI.s1 /CLONE=UI-R-C2p-oi-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.25921.1 /TIER=ConsEnd /STK=1 /UG=Rn.25921 /UG_TITLE=ESTs AI138038 1394792_at AW919686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919686 /DB_XREF=gi:8085485 /DB_XREF=EST350990 /CLONE=RGIGF63 /FEA=EST /CNT=3 /TID=Rn.40445.1 /TIER=ConsEnd /STK=1 /UG=Rn.40445 /UG_TITLE=ESTs AW919686 1394793_at AI715674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715674 /DB_XREF=gi:5032927 /DB_XREF=UI-R-Y0-abu-e-09-0-UI.s1 /CLONE=UI-R-Y0-abu-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.55366.1 /TIER=ConsEnd /STK=1 /UG=Rn.55366 /UG_TITLE=ESTs AI715674 1394794_at BF390257 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390257 /DB_XREF=gi:11375103 /DB_XREF=UI-R-CA1-bcm-f-06-0-UI.s1 /CLONE=UI-R-CA1-bcm-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.64332.1 /TIER=ConsEnd /STK=1 /UG=Rn.64332 /UG_TITLE=ESTs, Weakly similar to T19327 hypothetical protein C16C10.6 - Caenorhabditis elegans (C.elegans) BF390257 coiled-coil domain containing 55 Ccdc55 303346 NM_001037189 0016607 // nuclear speck // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded 1394795_at BE109243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109243 /DB_XREF=gi:8501348 /DB_XREF=UI-R-BS1-azd-e-10-0-UI.s1 /CLONE=UI-R-BS1-azd-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.48834.1 /TIER=ConsEnd /STK=1 /UG=Rn.48834 /UG_TITLE=ESTs BE109243 1394796_at AA964964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964964 /DB_XREF=gi:4279838 /DB_XREF=UI-R-C0-hb-c-03-0-UI.s1 /CLONE=UI-R-C0-hb-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.33009.1 /TIER=ConsEnd /STK=1 /UG=Rn.33009 /UG_TITLE=ESTs AA964964 MAP/microtubule affinity-regulating kinase 4 Mark4 680407 NM_001191071 /// XM_001057742 /// XM_002725542 /// XM_002725543 /// XM_002728699 0000226 // microtubule cytoskeleton organization // not recorded /// 0001578 // microtubule bundle formation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007399 // nervous system development // not recorded 0005813 // centrosome // not recorded /// 0005815 // microtubule organizing center // not recorded /// 0015630 // microtubule cytoskeleton // not recorded /// 0043005 // neuron projection // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008017 // microtubule binding // not recorded /// 0043015 // gamma-tubulin binding // not recorded /// 0050321 // tau-protein kinase activity // not recorded 1394797_at BI276075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276075 /DB_XREF=gi:14920637 /DB_XREF=UI-R-CW0-bwn-g-09-0-UI.s1 /CLONE=UI-R-CW0-bwn-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.54356.1 /TIER=ConsEnd /STK=1 /UG=Rn.54356 /UG_TITLE=ESTs BI276075 1394798_at AA859580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859580 /DB_XREF=gi:4230126 /DB_XREF=UI-R-E0-bv-c-12-0-UI.s1 /CLONE=UI-R-E0-bv-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.42327.1 /TIER=ConsEnd /STK=1 /UG=Rn.42327 /UG_TITLE=ESTs AA859580 Similar to MIC2 like 1 LOC679551 679551 XM_001053447 1394799_at AI716831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716831 /DB_XREF=gi:5034087 /DB_XREF=UI-R-Y0-acg-f-08-0-UI.s1 /CLONE=UI-R-Y0-acg-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.41496.1 /TIER=ConsEnd /STK=1 /UG=Rn.41496 /UG_TITLE=ESTs AI716831 1394800_at BF290090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290090 /DB_XREF=gi:11221160 /DB_XREF=EST454681 /CLONE=RGIHN63 /FEA=EST /CNT=3 /TID=Rn.43418.1 /TIER=ConsEnd /STK=1 /UG=Rn.43418 /UG_TITLE=ESTs BF290090 1394801_at AI555464 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555464 /DB_XREF=gi:4487827 /DB_XREF=UI-R-C2p-qq-d-10-0-UI.s1 /CLONE=UI-R-C2p-qq-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.38819.1 /TIER=ConsEnd /STK=1 /UG=Rn.38819 /UG_TITLE=ESTs AI555464 1394802_at AW920780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920780 /DB_XREF=gi:8086595 /DB_XREF=EST352084 /CLONE=RGIHC34 /FEA=EST /CNT=3 /TID=Rn.55731.1 /TIER=ConsEnd /STK=1 /UG=Rn.55731 /UG_TITLE=ESTs AW920780 Synaptotagmin VII Syt7 59267 NM_021659 0001778 // plasma membrane repair // inferred from electronic annotation /// 0001778 // plasma membrane repair // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0017158 // regulation of calcium ion-dependent exocytosis // inferred from mutant phenotype /// 0050796 // regulation of insulin secretion // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from mutant phenotype 1394803_at AA957188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957188 /DB_XREF=gi:4277079 /DB_XREF=UI-R-E1-fp-g-11-0-UI.s1 /CLONE=UI-R-E1-fp-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.66795.1 /TIER=ConsEnd /STK=1 /UG=Rn.66795 /UG_TITLE=ESTs AA957188 vacuolar protein sorting 52 homolog (S. cerevisiae) Vps52 25218 NM_033097 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1394804_at AI599871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599871 /DB_XREF=gi:4608919 /DB_XREF=EST251574 /CLONE=REMEK12 /FEA=EST /CNT=3 /TID=Rn.55435.1 /TIER=ConsEnd /STK=1 /UG=Rn.55435 /UG_TITLE=ESTs AI599871 1394805_at BF402425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402425 /DB_XREF=gi:11390400 /DB_XREF=UI-R-CA0-bhp-b-01-0-UI.s1 /CLONE=UI-R-CA0-bhp-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.58678.1 /TIER=ConsEnd /STK=1 /UG=Rn.58678 /UG_TITLE=ESTs BF402425 1394806_at BF418149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418149 /DB_XREF=gi:11406138 /DB_XREF=UI-R-CN0-blt-a-09-0-UI.s1 /CLONE=UI-R-CN0-blt-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.63376.1 /TIER=ConsEnd /STK=1 /UG=Rn.63376 /UG_TITLE=ESTs BF418149 non-specific cytotoxic cell receptor protein 1 homolog (zebrafish) Nccrp1 292755 NM_001134506 0030163 // protein catabolic process // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1394807_at AW522357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522357 /DB_XREF=gi:7164742 /DB_XREF=UI-R-BO0-ahw-b-05-0-UI.s1 /CLONE=UI-R-BO0-ahw-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.45371.1 /TIER=ConsEnd /STK=1 /UG=Rn.45371 /UG_TITLE=ESTs AW522357 1394808_at AW531925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531925 /DB_XREF=gi:7174339 /DB_XREF=UI-R-C4-alh-a-03-0-UI.s1 /CLONE=UI-R-C4-alh-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.64150.1 /TIER=ConsEnd /STK=1 /UG=Rn.64150 /UG_TITLE=ESTs, Weakly similar to T28058 hypothetical protein ZK858.6 - Caenorhabditis elegans (C.elegans) AW531925 transmembrane 9 superfamily protein member 4 Tm9sf4 296279 NM_001025649 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1394809_at AW522733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522733 /DB_XREF=gi:7165083 /DB_XREF=UI-R-BO0-ahl-g-06-0-UI.s1 /CLONE=UI-R-BO0-ahl-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.45458.1 /TIER=ConsEnd /STK=1 /UG=Rn.45458 /UG_TITLE=ESTs AW522733 1394810_at BF289684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289684 /DB_XREF=gi:11220754 /DB_XREF=EST454275 /CLONE=RGIHJ81 /FEA=EST /CNT=3 /TID=Rn.55807.1 /TIER=ConsEnd /STK=1 /UG=Rn.55807 /UG_TITLE=ESTs BF289684 1394811_at AI576068 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576068 /DB_XREF=gi:4560444 /DB_XREF=UI-R-G0-uo-g-03-0-UI.s1 /CLONE=UI-R-G0-uo-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.39233.1 /TIER=ConsEnd /STK=1 /UG=Rn.39233 /UG_TITLE=ESTs AI576068 Poly (ADP-ribose) polymerase family, member 6 Parp6 300759 NM_001106828 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from electronic annotation 1394812_at AW921068 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921068 /DB_XREF=gi:8086887 /DB_XREF=EST352372 /CLONE=RGIHM95 /FEA=EST /CNT=3 /TID=Rn.49018.1 /TIER=ConsEnd /STK=1 /UG=Rn.49018 /UG_TITLE=ESTs AW921068 ALS2 C-terminal like Als2cl 316017 XM_001076120 /// XM_002727139 /// XM_002729977 /// XM_236654 0007032 // endosome organization // not recorded /// 0008104 // protein localization // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017112 // Rab guanyl-nucleotide exchange factor activity // not recorded /// 0017137 // Rab GTPase binding // not recorded /// 0042802 // identical protein binding // not recorded 1394813_at AI547996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547996 /DB_XREF=gi:4465484 /DB_XREF=UI-R-C3-th-h-07-0-UI.s1 /CLONE=UI-R-C3-th-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.43717.1 /TIER=ConsEnd /STK=1 /UG=Rn.43717 /UG_TITLE=ESTs AI547996 1394814_at BF398127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398127 /DB_XREF=gi:11383113 /DB_XREF=UI-R-BS2-bem-f-11-0-UI.s1 /CLONE=UI-R-BS2-bem-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.58980.1 /TIER=ConsEnd /STK=1 /UG=Rn.58980 /UG_TITLE=ESTs, Moderately similar to TPR_HUMAN NUCLEOPROTEIN TPR (H.sapiens) BF398127 translocated promoter region Tpr 304862 NM_001107185 0006412 // translation // inferred from electronic annotation /// 0006434 // seryl-tRNA aminoacylation // inferred from electronic annotation /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0007094 // mitotic cell cycle spindle assembly checkpoint // not recorded 0000776 // kinetochore // not recorded /// 0005635 // nuclear envelope // not recorded /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005643 // nuclear pore // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004828 // serine-tRNA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1394815_at BE107436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107436 /DB_XREF=gi:8499541 /DB_XREF=UI-R-BS1-ayt-f-09-0-UI.s1 /CLONE=UI-R-BS1-ayt-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.48832.1 /TIER=ConsEnd /STK=1 /UG=Rn.48832 /UG_TITLE=ESTs BE107436 1394816_at AI501478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501478 /DB_XREF=gi:4399329 /DB_XREF=UI-R-C2p-sb-f-04-0-UI.s1 /CLONE=UI-R-C2p-sb-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.72562.1 /TIER=ConsEnd /STK=1 /UG=Rn.72562 /UG_TITLE=ESTs AI501478 1394817_at AI548775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548775 /DB_XREF=gi:4466263 /DB_XREF=UI-R-C3-tr-e-03-0-UI.s1 /CLONE=UI-R-C3-tr-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.43672.1 /TIER=ConsEnd /STK=1 /UG=Rn.43672 /UG_TITLE=ESTs AI548775 1394818_at AI176867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176867 /DB_XREF=gi:3727505 /DB_XREF=EST220470 /CLONE=ROVBX86 /FEA=EST /CNT=3 /TID=Rn.55674.1 /TIER=ConsEnd /STK=1 /UG=Rn.55674 /UG_TITLE=ESTs AI176867 1394819_at AI177957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177957 /DB_XREF=gi:3728595 /DB_XREF=EST221610 /CLONE=RPLCJ15 /FEA=EST /CNT=3 /TID=Rn.37898.1 /TIER=ConsEnd /STK=1 /UG=Rn.37898 /UG_TITLE=ESTs, Weakly similar to B49515 phosphoprotein 75 (H.sapiens) AI177957 SP110 nuclear body protein Sp110 301570 NM_001034137 0006350 // transcription // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0009617 // response to bacterium // not recorded /// 0045087 // innate immune response // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1394820_at AI704849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI704849 /DB_XREF=gi:4992749 /DB_XREF=UI-R-AC0-yq-b-01-0-UI.s1 /CLONE=UI-R-AC0-yq-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.48950.1 /TIER=ConsEnd /STK=1 /UG=Rn.48950 /UG_TITLE=ESTs AI704849 1394821_at BF399731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399731 /DB_XREF=gi:11384741 /DB_XREF=UI-R-CA0-bhx-h-03-0-UI.s1 /CLONE=UI-R-CA0-bhx-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.57513.1 /TIER=ConsEnd /STK=1 /UG=Rn.57513 /UG_TITLE=ESTs BF399731 1394822_at BI275960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275960 /DB_XREF=gi:14920399 /DB_XREF=UI-R-CX0-bxi-e-04-0-UI.s1 /CLONE=UI-R-CX0-bxi-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.77521.1 /TIER=ConsEnd /STK=1 /UG=Rn.77521 /UG_TITLE=ESTs BI275960 1394823_at AW921107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921107 /DB_XREF=gi:8086927 /DB_XREF=EST352411 /CLONE=RGIHN45 /FEA=EST /CNT=3 /TID=Rn.55885.1 /TIER=ConsEnd /STK=1 /UG=Rn.55885 /UG_TITLE=ESTs AW921107 1394824_at BF398348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398348 /DB_XREF=gi:11383337 /DB_XREF=UI-R-BS2-bey-f-11-0-UI.s1 /CLONE=UI-R-BS2-bey-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.64478.1 /TIER=ConsEnd /STK=1 /UG=Rn.64478 /UG_TITLE=ESTs, Weakly similar to S26689 hypothetical protein hc1 - mouse (M.musculus) BF398348 integrin, alpha 11 Itga11 315744 NM_001108156 0006929 // substrate-dependent cell migration // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation 0008305 // integrin complex // inferred from electronic annotation 1394825_at BF291173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291173 /DB_XREF=gi:11222243 /DB_XREF=EST455764 /CLONE=RGIIJ66 /FEA=EST /CNT=3 /TID=Rn.56051.1 /TIER=ConsEnd /STK=1 /UG=Rn.56051 /UG_TITLE=ESTs, Weakly similar to SH3 domain binding protein (R.norvegicus) BF291173 1394826_at BF417759 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417759 /DB_XREF=gi:11405748 /DB_XREF=UI-R-CN0-blr-h-01-0-UI.s1 /CLONE=UI-R-CN0-blr-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.31491.1 /TIER=ConsEnd /STK=1 /UG=Rn.31491 /UG_TITLE=ESTs BF417759 1394827_at AI012667 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012667 /DB_XREF=gi:3226499 /DB_XREF=EST207118 /CLONE=RPLBA26 /FEA=EST /CNT=3 /TID=Rn.55468.1 /TIER=ConsEnd /STK=1 /UG=Rn.55468 /UG_TITLE=ESTs AI012667 similar to KIAA0240 RGD1305680 301235 NM_001106888 1394828_at BF406986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406986 /DB_XREF=gi:11394926 /DB_XREF=UI-R-BJ2-bps-h-12-0-UI.s1 /CLONE=UI-R-BJ2-bps-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.37629.1 /TIER=ConsEnd /STK=1 /UG=Rn.37629 /UG_TITLE=ESTs BF406986 1394829_at AI105271 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105271 /DB_XREF=gi:3709392 /DB_XREF=EST214560 /CLONE=RKIBI13 /FEA=EST /CNT=3 /TID=Rn.56165.1 /TIER=ConsEnd /STK=1 /UG=Rn.56165 /UG_TITLE=ESTs AI105271 1394830_at AI501276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501276 /DB_XREF=gi:4399127 /DB_XREF=UI-R-C2p-ry-h-07-0-UI.s1 /CLONE=UI-R-C2p-ry-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.73828.1 /TIER=ConsEnd /STK=1 /UG=Rn.73828 /UG_TITLE=ESTs AI501276 1394831_at AW524225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524225 /DB_XREF=gi:7166610 /DB_XREF=UI-R-BO0-aii-h-05-0-UI.s1 /CLONE=UI-R-BO0-aii-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.44677.1 /TIER=ConsEnd /STK=1 /UG=Rn.44677 /UG_TITLE=ESTs AW524225 1394832_at AI136675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136675 /DB_XREF=gi:3637452 /DB_XREF=UI-R-C2p-nq-c-09-0-UI.s1 /CLONE=UI-R-C2p-nq-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.60291.1 /TIER=ConsEnd /STK=1 /UG=Rn.60291 /UG_TITLE=ESTs AI136675 1394833_at BE120930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120930 /DB_XREF=gi:8513035 /DB_XREF=UI-R-CA0-baf-b-07-0-UI.s1 /CLONE=UI-R-CA0-baf-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.65084.1 /TIER=ConsEnd /STK=1 /UG=Rn.65084 /UG_TITLE=ESTs BE120930 1394834_at BF393831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393831 /DB_XREF=gi:11378694 /DB_XREF=UI-R-CA0-bgv-e-02-0-UI.s1 /CLONE=UI-R-CA0-bgv-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.57981.1 /TIER=ConsEnd /STK=1 /UG=Rn.57981 /UG_TITLE=ESTs, Weakly similar to FYVE zinc finger (Caenorhabditis elegans) (C.elegans) BF393831 WD repeat and FYVE domain containing 3 Wdfy3 305164 NM_001170551 /// XM_001060345 /// XM_001060403 /// XM_223196 0008152 // metabolic process // not recorded 0005635 // nuclear envelope // not recorded /// 0005737 // cytoplasm // not recorded /// 0005776 // autophagic vacuole // not recorded /// 0019898 // extrinsic to membrane // not recorded /// 0044444 // cytoplasmic part // not recorded 0003831 // beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005545 // phosphatidylinositol binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1394835_at AI176861 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176861 /DB_XREF=gi:3727499 /DB_XREF=EST220464 /CLONE=ROVBX79 /FEA=EST /CNT=3 /TID=Rn.55673.1 /TIER=ConsEnd /STK=1 /UG=Rn.55673 /UG_TITLE=ESTs AI176861 1394836_at AI535155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535155 /DB_XREF=gi:4449290 /DB_XREF=UI-R-C3-sq-a-06-0-UI.s1 /CLONE=UI-R-C3-sq-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.72501.1 /TIER=ConsEnd /STK=1 /UG=Rn.72501 /UG_TITLE=ESTs AI535155 1394837_at BF405797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405797 /DB_XREF=gi:11393812 /DB_XREF=UI-R-CA1-bje-i-06-0-UI.s1 /CLONE=UI-R-CA1-bje-i-06-0-UI /FEA=EST /CNT=3 /TID=Rn.71359.1 /TIER=ConsEnd /STK=1 /UG=Rn.71359 /UG_TITLE=ESTs, Weakly similar to A43778 neurofilament triplet H protein - mouse (M.musculus) BF405797 1394838_at AI136390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136390 /DB_XREF=gi:3637167 /DB_XREF=UI-R-C2p-od-e-05-0-UI.s1 /CLONE=UI-R-C2p-od-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.27115.1 /TIER=ConsEnd /STK=1 /UG=Rn.27115 /UG_TITLE=ESTs AI136390 amine oxidase, copper containing 3 (vascular adhesion protein 1) Aoc3 29473 NM_031582 0002523 // leukocyte migration involved in inflammatory response // inferred from mutant phenotype /// 0002675 // positive regulation of acute inflammatory response // inferred from mutant phenotype /// 0002687 // positive regulation of leukocyte migration // inferred from mutant phenotype /// 0006950 // response to stress // inferred from mutant phenotype /// 0007155 // cell adhesion // not recorded /// 0007155 // cell adhesion // inferred from sequence or structural similarity /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007568 // aging // inferred from expression pattern /// 0008217 // regulation of blood pressure // inferred from mutant phenotype /// 0009308 // amine metabolic process // inferred from electronic annotation /// 0009308 // amine metabolic process // not recorded /// 0009308 // amine metabolic process // inferred from sequence or structural similarity /// 0010828 // positive regulation of glucose transport // inferred from direct assay /// 0042755 // eating behavior // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from electronic annotation 0005507 // copper ion binding // inferred from electronic annotation /// 0008131 // primary amine oxidase activity // inferred from direct assay /// 0008131 // primary amine oxidase activity // inferred from electronic annotation /// 0008131 // primary amine oxidase activity // not recorded /// 0008131 // primary amine oxidase activity // inferred from sequence or structural similarity /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048038 // quinone binding // inferred from electronic annotation /// 0048038 // quinone binding // not recorded /// 0048038 // quinone binding // inferred from sequence or structural similarity 1394839_at AA850773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850773 /DB_XREF=gi:2938313 /DB_XREF=EST193541 /CLONE=ROVAK61 /FEA=EST /CNT=3 /TID=Rn.55557.1 /TIER=ConsEnd /STK=1 /UG=Rn.55557 /UG_TITLE=ESTs AA850773 1394840_at AI511432 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511432 /DB_XREF=gi:4417131 /DB_XREF=UI-R-C3-sh-c-10-0-UI.s1 /CLONE=UI-R-C3-sh-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.34719.1 /TIER=ConsEnd /STK=1 /UG=Rn.34719 /UG_TITLE=ESTs AI511432 1394841_at BF396360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396360 /DB_XREF=gi:11381332 /DB_XREF=UI-R-BS2-bdx-c-04-0-UI.s1 /CLONE=UI-R-BS2-bdx-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.64291.1 /TIER=ConsEnd /STK=1 /UG=Rn.64291 /UG_TITLE=ESTs BF396360 1394842_at BF289172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289172 /DB_XREF=gi:11220242 /DB_XREF=EST453763 /CLONE=RGIHB89 /FEA=EST /CNT=3 /TID=Rn.55727.1 /TIER=ConsEnd /STK=1 /UG=Rn.55727 /UG_TITLE=ESTs, Moderately similar to S14234 hypothetical protein - mouse (M.musculus) BF289172 transmembrane protein 19 Tmem19 299800 NM_199098 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1394843_at BI276823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276823 /DB_XREF=gi:14922105 /DB_XREF=UI-R-CX0-bxl-h-04-0-UI.s1 /CLONE=UI-R-CX0-bxl-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.72427.1 /TIER=ConsEnd /STK=1 /UG=Rn.72427 /UG_TITLE=ESTs BI276823 1394844_s_at AA893326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893326 /DB_XREF=gi:3020205 /DB_XREF=EST197129 /CLONE=RKIBF10 /FEA=EST /CNT=3 /TID=Rn.81123.1 /TIER=ConsEnd /STK=1 /UG=Rn.81123 /UG_TITLE=ESTs AA893326 cytochrome P450, family 4, subfamily a, polypeptide 2 /// cytochrome P450, family 4, subfamily a, polypeptide 3 Cyp4a2 /// Cyp4a3 24306 /// 298423 NM_001044770 /// NM_175760 0001822 // kidney development // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0019369 // arachidonic acid metabolic process // inferred from mutant phenotype /// 0019369 // arachidonic acid metabolic process // traceable author statement /// 0042493 // response to drug // inferred from expression pattern /// 0043651 // linoleic acid metabolic process // inferred from direct assay /// 0046456 // icosanoid biosynthetic process // inferred from mutant phenotype /// 0048252 // lauric acid metabolic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005504 // fatty acid binding // inferred from direct assay /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008391 // arachidonic acid monooxygenase activity // inferred from mutant phenotype /// 0008405 // arachidonic acid 11,12-epoxygenase activity // traceable author statement /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0018685 // alkane 1-monooxygenase activity // inferred from mutant phenotype /// 0018685 // alkane 1-monooxygenase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050544 // arachidonic acid binding // inferred from direct assay 1394845_at BF542618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542618 /DB_XREF=gi:11633725 /DB_XREF=UI-R-C2p-sd-c-03-0-UI.r1 /CLONE=UI-R-C2p-sd-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.37299.1 /TIER=ConsEnd /STK=1 /UG=Rn.37299 /UG_TITLE=ESTs BF542618 aquarius homolog (mouse) Aqr 366163 NM_001100987 1394846_at AI237640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237640 /DB_XREF=gi:3831146 /DB_XREF=EST234202 /CLONE=RPLDB76 /FEA=EST /CNT=3 /TID=Rn.55509.1 /TIER=ConsEnd /STK=1 /UG=Rn.55509 /UG_TITLE=ESTs, Weakly similar to paired-Ig-like receptor A10 (Mus musculus) (M.musculus) AI237640 1394847_at BF566756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF566756 /DB_XREF=gi:11676486 /DB_XREF=UI-R-BJ0p-afi-b-12-0-UI.r1 /CLONE=UI-R-BJ0p-afi-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.54315.1 /TIER=ConsEnd /STK=1 /UG=Rn.54315 /UG_TITLE=ESTs, Weakly similar to B53764 beta2-chimerin, cerebellar - rat (R.norvegicus) BF566756 synapse defective 1, Rho GTPase, homolog 1 (C. elegans) Syde1 362842 NM_001191876 /// XM_001077806 /// XM_343173 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 1394848_at AI145792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145792 /DB_XREF=gi:3667591 /DB_XREF=UI-R-BT0-qi-c-07-0-UI.s1 /CLONE=UI-R-BT0-qi-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.28616.1 /TIER=ConsEnd /STK=1 /UG=Rn.28616 /UG_TITLE=ESTs AI145792 1394849_at BF402012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402012 /DB_XREF=gi:11389987 /DB_XREF=UI-R-CA0-bhv-f-06-0-UI.s1 /CLONE=UI-R-CA0-bhv-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.40703.1 /TIER=ConsEnd /STK=1 /UG=Rn.40703 /UG_TITLE=ESTs BF402012 zinc finger and BTB domain containing 20 Zbtb20 288105 NM_001105880 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1394850_at AI232392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232392 /DB_XREF=gi:3816272 /DB_XREF=EST229080 /CLONE=RKICB15 /FEA=EST /CNT=3 /TID=Rn.55229.1 /TIER=ConsEnd /STK=1 /UG=Rn.55229 /UG_TITLE=ESTs AI232392 1394851_at BF290088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290088 /DB_XREF=gi:11221158 /DB_XREF=EST454679 /CLONE=RGIHN61 /FEA=EST /CNT=3 /TID=Rn.55888.1 /TIER=ConsEnd /STK=1 /UG=Rn.55888 /UG_TITLE=ESTs, Highly similar to HK23 MOUSE HOMEOBOX PROTEIN NKX-2.3 (M.musculus) BF290088 NK2 transcription factor related, locus 3 (Drosophila) Nkx2-3 309389 NM_001107594 0001776 // leukocyte homeostasis // not recorded /// 0002317 // plasma cell differentiation // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // not recorded /// 0006955 // immune response // not recorded /// 0009791 // post-embryonic development // not recorded /// 0016333 // morphogenesis of follicular epithelium // not recorded /// 0022612 // gland morphogenesis // not recorded /// 0030183 // B cell differentiation // not recorded /// 0030225 // macrophage differentiation // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0043367 // CD4-positive, alpha beta T cell differentiation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048535 // lymph node development // not recorded /// 0048536 // spleen development // not recorded /// 0048537 // mucosal-associated lymphoid tissue development // not recorded /// 0048541 // Peyer's patch development // not recorded /// 0048565 // digestive tract development // not recorded /// 0048621 // post-embryonic digestive tract morphogenesis // not recorded /// 0050900 // leukocyte migration // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1394852_at AI175769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175769 /DB_XREF=gi:3726407 /DB_XREF=EST219337 /CLONE=ROVBF14 /FEA=EST /CNT=3 /TID=Rn.33907.1 /TIER=ConsEnd /STK=1 /UG=Rn.33907 /UG_TITLE=ESTs AI175769 1394853_at AI233110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233110 /DB_XREF=gi:3816990 /DB_XREF=EST229798 /CLONE=RKICK91 /FEA=EST /CNT=3 /TID=Rn.56012.1 /TIER=ConsEnd /STK=1 /UG=Rn.56012 /UG_TITLE=ESTs AI233110 angio-associated, migratory cell protein Aamp 301512 NM_001106920 0014909 // smooth muscle cell migration // not recorded 0009986 // cell surface // not recorded 1394854_at AA818755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818755 /DB_XREF=gi:4227432 /DB_XREF=UI-R-A0-ay-b-01-0-UI.s1 /CLONE=UI-R-A0-ay-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.33853.1 /TIER=ConsEnd /STK=1 /UG=Rn.33853 /UG_TITLE=ESTs, Moderately similar to TRF1 MOUSE TELOMERIC REPEAT BINDING FACTOR 1 (M.musculus) AA818755 telomeric repeat binding factor (NIMA-interacting) 1 Terf1 297758 NM_001012464 0000086 // G2/M transition of mitotic cell cycle // not recorded /// 0001309 // age-dependent telomere shortening // not recorded /// 0006917 // induction of apoptosis // not recorded /// 0006919 // activation of caspase activity // not recorded /// 0007004 // telomere maintenance via telomerase // inferred from electronic annotation /// 0007004 // telomere maintenance via telomerase // not recorded /// 0007094 // mitotic cell cycle spindle assembly checkpoint // not recorded /// 0008156 // negative regulation of DNA replication // not recorded /// 0010834 // telomere maintenance via telomere shortening // not recorded /// 0031116 // positive regulation of microtubule polymerization // not recorded /// 0032211 // negative regulation of telomere maintenance via telomerase // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045840 // positive regulation of mitosis // not recorded /// 0045931 // positive regulation of mitotic cell cycle // not recorded /// 0051260 // protein homooligomerization // not recorded /// 0051974 // negative regulation of telomerase activity // not recorded 0000781 // chromosome, telomeric region // not recorded /// 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0000783 // nuclear telomere cap complex // inferred from electronic annotation /// 0000783 // nuclear telomere cap complex // not recorded /// 0000784 // nuclear chromosome, telomeric region // not recorded /// 0000784 // nuclear chromosome, telomeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005819 // spindle // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003691 // double-stranded telomeric DNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // not recorded /// 0008301 // DNA bending activity // not recorded /// 0008656 // caspase activator activity // not recorded /// 0010521 // telomerase inhibitor activity // not recorded /// 0042162 // telomeric DNA binding // inferred from electronic annotation /// 0042162 // telomeric DNA binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1394855_at AW526448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526448 /DB_XREF=gi:7168862 /DB_XREF=UI-R-BO1-aix-c-01-0-UI.s1 /CLONE=UI-R-BO1-aix-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.46198.1 /TIER=ConsEnd /STK=1 /UG=Rn.46198 /UG_TITLE=ESTs AW526448 1394856_at BM383417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383417 /DB_XREF=gi:18183470 /DB_XREF=UI-R-DM1-ckb-f-16-0-UI.s1 /CLONE=UI-R-DM1-ckb-f-16-0-UI /FEA=EST /CNT=3 /TID=Rn.63139.1 /TIER=ConsEnd /STK=1 /UG=Rn.63139 /UG_TITLE=ESTs BM383417 1394857_at AI535136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535136 /DB_XREF=gi:4449271 /DB_XREF=UI-R-C3-sp-e-07-0-UI.s1 /CLONE=UI-R-C3-sp-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.34751.1 /TIER=ConsEnd /STK=1 /UG=Rn.34751 /UG_TITLE=ESTs AI535136 hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit Hadha 170670 NM_130826 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from direct assay /// 0006635 // fatty acid beta-oxidation // not recorded /// 0006635 // fatty acid beta-oxidation // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0042493 // response to drug // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0016507 // fatty acid beta-oxidation multienzyme complex // inferred from direct assay /// 0016507 // fatty acid beta-oxidation multienzyme complex // traceable author statement /// 0016507 // fatty acid beta-oxidation multienzyme complex // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded 0000062 // acyl-CoA binding // inferred from direct assay /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // inferred from direct assay /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // inferred from mutant phenotype /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0003988 // acetyl-CoA C-acyltransferase activity // inferred from direct assay /// 0004300 // enoyl-CoA hydratase activity // inferred from direct assay /// 0004300 // enoyl-CoA hydratase activity // inferred from mutant phenotype /// 0004300 // enoyl-CoA hydratase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016508 // long-chain-enoyl-CoA hydratase activity // inferred from direct assay /// 0016509 // long-chain-3-hydroxyacyl-CoA dehydrogenase activity // inferred from direct assay /// 0016509 // long-chain-3-hydroxyacyl-CoA dehydrogenase activity // not recorded /// 0016509 // long-chain-3-hydroxyacyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from direct assay 1394858_at AI145089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145089 /DB_XREF=gi:3666888 /DB_XREF=UI-R-BT0-px-a-05-0-UI.s1 /CLONE=UI-R-BT0-px-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.27800.1 /TIER=ConsEnd /STK=1 /UG=Rn.27800 /UG_TITLE=ESTs AI145089 1394859_at BF547483 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547483 /DB_XREF=gi:11638590 /DB_XREF=UI-R-C2p-ru-e-02-0-UI.r1 /CLONE=UI-R-C2p-ru-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.35189.1 /TIER=ConsEnd /STK=1 /UG=Rn.35189 /UG_TITLE=ESTs BF547483 1394860_at AI234929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234929 /DB_XREF=gi:3828435 /DB_XREF=EST231491 /CLONE=ROVCJ69 /FEA=EST /CNT=3 /TID=Rn.55718.1 /TIER=ConsEnd /STK=1 /UG=Rn.55718 /UG_TITLE=ESTs AI234929 1394861_at BF393712 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393712 /DB_XREF=gi:11378575 /DB_XREF=UI-R-CA0-bgb-a-10-0-UI.s1 /CLONE=UI-R-CA0-bgb-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.58117.1 /TIER=ConsEnd /STK=1 /UG=Rn.58117 /UG_TITLE=ESTs BF393712 1394862_at AI502545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502545 /DB_XREF=gi:4400396 /DB_XREF=UI-R-C2-nf-h-05-0-UI.s1 /CLONE=UI-R-C2-nf-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.37825.1 /TIER=ConsEnd /STK=1 /UG=Rn.37825 /UG_TITLE=ESTs AI502545 1394863_at AI547767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547767 /DB_XREF=gi:4465255 /DB_XREF=UI-R-C3-sj-e-09-0-UI.s1 /CLONE=UI-R-C3-sj-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.41719.1 /TIER=ConsEnd /STK=1 /UG=Rn.41719 /UG_TITLE=ESTs AI547767 1394864_at BE110718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110718 /DB_XREF=gi:8502864 /DB_XREF=UI-R-BJ1-avd-f-07-0-UI.s1 /CLONE=UI-R-BJ1-avd-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.63731.1 /TIER=ConsEnd /STK=1 /UG=Rn.63731 /UG_TITLE=ESTs BE110718 transmembrane protein 131 Tmem131 316335 XM_001056771 /// XM_237056 1394865_at AI709592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709592 /DB_XREF=gi:4999368 /DB_XREF=UI-R-AC1-xw-b-01-0-UI.s1 /CLONE=UI-R-AC1-xw-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.40701.1 /TIER=ConsEnd /STK=1 /UG=Rn.40701 /UG_TITLE=ESTs AI709592 receptor (chemosensory) transporter protein 3 Rtp3 316018 NM_001108190 0016021 // integral to membrane // inferred from electronic annotation 1394866_at AI511410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511410 /DB_XREF=gi:4417109 /DB_XREF=UI-R-C3-sh-a-10-0-UI.s1 /CLONE=UI-R-C3-sh-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.37257.1 /TIER=ConsEnd /STK=1 /UG=Rn.37257 /UG_TITLE=ESTs AI511410 1394867_at AA944444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944444 /DB_XREF=gi:3104360 /DB_XREF=EST199943 /CLONE=REMAJ30 /FEA=EST /CNT=3 /TID=Rn.55384.1 /TIER=ConsEnd /STK=1 /UG=Rn.55384 /UG_TITLE=ESTs AA944444 1394868_at BI301178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301178 /DB_XREF=gi:14977458 /DB_XREF=UI-R-DK0-cdx-b-09-0-UI.s2 /CLONE=UI-R-DK0-cdx-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.76816.1 /TIER=ConsEnd /STK=1 /UG=Rn.76816 /UG_TITLE=ESTs, Weakly similar to MSH6 MOUSE DNA MISMATCH REPAIR PROTEIN MSH6 (M.musculus) BI301178 Wolf-Hirschhorn syndrome candidate 1-like 1 (human) Whsc1l1 290831 NM_001106090 0016571 // histone methylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1394869_at BE104854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104854 /DB_XREF=gi:8496954 /DB_XREF=UI-R-BX0-aru-d-12-0-UI.s1 /CLONE=UI-R-BX0-aru-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.49117.1 /TIER=ConsEnd /STK=1 /UG=Rn.49117 /UG_TITLE=ESTs BE104854 1394870_at BE115332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115332 /DB_XREF=gi:8507437 /DB_XREF=UI-R-BJ1-avr-a-04-0-UI.s1 /CLONE=UI-R-BJ1-avr-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.41291.1 /TIER=ConsEnd /STK=1 /UG=Rn.41291 /UG_TITLE=ESTs BE115332 1394871_at BF394431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394431 /DB_XREF=gi:11379297 /DB_XREF=UI-R-CA0-bfv-g-06-0-UI.s1 /CLONE=UI-R-CA0-bfv-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.58279.1 /TIER=ConsEnd /STK=1 /UG=Rn.58279 /UG_TITLE=ESTs BF394431 1394872_x_at AI235078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235078 /DB_XREF=gi:3828584 /DB_XREF=EST231640 /CLONE=ROVCN14 /FEA=EST /CNT=3 /TID=Rn.55730.1 /TIER=ConsEnd /STK=1 /UG=Rn.55730 /UG_TITLE=ESTs AI235078 1394873_at AI454447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454447 /DB_XREF=gi:4293790 /DB_XREF=UI-R-C2p-qo-a-04-0-UI.s1 /CLONE=UI-R-C2p-qo-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.35031.1 /TIER=ConsEnd /STK=1 /UG=Rn.35031 /UG_TITLE=ESTs, Highly similar to MTR2_MOUSE MYOTUBULARIN-RELATED PROTEIN 2 (M.musculus) AI454447 Myotubularin related protein 2 Mtmr2 315422 NM_001108123 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0051262 // protein tetramerization // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005774 // vacuolar membrane // not recorded 0004437 // inositol or phosphatidylinositol phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1394874_at BI282576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282576 /DB_XREF=gi:14933484 /DB_XREF=UI-R-DD0-bzy-f-06-0-UI.s1 /CLONE=UI-R-DD0-bzy-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.78306.1 /TIER=ConsEnd /STK=1 /UG=Rn.78306 /UG_TITLE=ESTs BI282576 1394875_at AW919027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919027 /DB_XREF=gi:8084816 /DB_XREF=EST350331 /CLONE=RGIFB76 /FEA=EST /CNT=3 /TID=Rn.28285.1 /TIER=ConsEnd /STK=1 /UG=Rn.28285 /UG_TITLE=ESTs AW919027 1394876_at AI454929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454929 /DB_XREF=gi:4297163 /DB_XREF=UI-R-C2p-ql-e-08-0-UI.s1 /CLONE=UI-R-C2p-ql-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.37109.1 /TIER=ConsEnd /STK=1 /UG=Rn.37109 /UG_TITLE=ESTs AI454929 1394877_at AI137678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137678 /DB_XREF=gi:3638455 /DB_XREF=UI-R-C0-hq-f-04-0-UI.s1 /CLONE=UI-R-C0-hq-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.27482.1 /TIER=ConsEnd /STK=1 /UG=Rn.27482 /UG_TITLE=ESTs AI137678 1394878_at AW920150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920150 /DB_XREF=gi:8085865 /DB_XREF=EST351363 /CLONE=RGIGQ29 /FEA=EST /CNT=3 /TID=Rn.55510.1 /TIER=ConsEnd /STK=1 /UG=Rn.55510 /UG_TITLE=ESTs AW920150 1394879_at BF417978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417978 /DB_XREF=gi:11406007 /DB_XREF=UI-R-CA1-blv-e-02-0-UI.s1 /CLONE=UI-R-CA1-blv-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.63329.1 /TIER=ConsEnd /STK=1 /UG=Rn.63329 /UG_TITLE=ESTs BF417978 1394880_at BE102072 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102072 /DB_XREF=gi:8494171 /DB_XREF=UI-R-BT1-aqj-a-09-0-UI.s1 /CLONE=UI-R-BT1-aqj-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.64896.1 /TIER=ConsEnd /STK=1 /UG=Rn.64896 /UG_TITLE=ESTs BE102072 1394881_at AI578410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578410 /DB_XREF=gi:4562786 /DB_XREF=UI-R-C3-su-f-11-0-UI.s2 /CLONE=UI-R-C3-su-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.39148.1 /TIER=ConsEnd /STK=1 /UG=Rn.39148 /UG_TITLE=ESTs AI578410 family with sequence similarity 81, member A Fam81a 315789 NM_001108163 1394882_at BF289542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289542 /DB_XREF=gi:11220612 /DB_XREF=EST454133 /CLONE=RGIHI31 /FEA=EST /CNT=3 /TID=Rn.43407.1 /TIER=ConsEnd /STK=1 /UG=Rn.43407 /UG_TITLE=ESTs BF289542 Interleukin 20 receptor beta Il20rb 501043 NM_001173438 /// XM_001071171 /// XM_576456 0001808 // negative regulation of type IV hypersensitivity // not recorded /// 0002437 // inflammatory response to antigenic stimulus // not recorded /// 0002765 // immune response-inhibiting signal transduction // not recorded /// 0007596 // blood coagulation // inferred from electronic annotation /// 0032689 // negative regulation of interferon-gamma production // not recorded /// 0032703 // negative regulation of interleukin-2 production // not recorded /// 0032733 // positive regulation of interleukin-10 production // not recorded /// 0032753 // positive regulation of interleukin-4 production // not recorded /// 0042130 // negative regulation of T cell proliferation // not recorded /// 0048873 // homeostasis of number of cells within a tissue // not recorded /// 0050863 // regulation of T cell activation // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1394883_at AI179616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179616 /DB_XREF=gi:3730254 /DB_XREF=EST223339 /CLONE=RSPCJ63 /FEA=EST /CNT=3 /TID=Rn.38545.1 /TIER=ConsEnd /STK=1 /UG=Rn.38545 /UG_TITLE=ESTs AI179616 1394884_s_at AI171809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171809 /DB_XREF=gi:3711849 /DB_XREF=EST217791 /CLONE=RMUBQ96 /FEA=EST /CNT=3 /TID=Rn.65143.1 /TIER=ConsEnd /STK=1 /UG=Rn.65143 /UG_TITLE=ESTs, Highly similar to SINGLE-STRANDED DNA-BINDING PROTEIN, MITOCHONDRIAL PRECURSOR (R.norvegicus) AI171809 single-stranded DNA binding protein 1 Ssbp1 54304 NM_183328 0006260 // DNA replication // inferred from electronic annotation /// 0051096 // positive regulation of helicase activity // not recorded /// 0070584 // mitochondrion morphogenesis // not recorded 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // non-traceable author statement /// 0005739 // mitochondrion // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // non-traceable author statement 1394885_at AI105003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105003 /DB_XREF=gi:3705088 /DB_XREF=EST214292 /CLONE=RHECM34 /FEA=EST /CNT=3 /TID=Rn.55291.1 /TIER=ConsEnd /STK=1 /UG=Rn.55291 /UG_TITLE=ESTs AI105003 RGD1565482 RGD1565482 291535 XM_238020 1394886_at AI235545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235545 /DB_XREF=gi:3829051 /DB_XREF=EST232107 /CLONE=ROVCT30 /FEA=EST /CNT=3 /TID=Rn.42195.1 /TIER=ConsEnd /STK=1 /UG=Rn.42195 /UG_TITLE=ESTs, Highly similar to IDHC RAT ISOCITRATE DEHYDROGENASE (R.norvegicus) AI235545 isocitrate dehydrogenase 1 (NADP+), soluble Idh1 24479 NM_031510 0006097 // glyoxylate cycle // inferred from electronic annotation /// 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0006102 // isocitrate metabolic process // inferred from direct assay /// 0006102 // isocitrate metabolic process // inferred from electronic annotation /// 0006102 // isocitrate metabolic process // not recorded /// 0006102 // isocitrate metabolic process // inferred from sequence or structural similarity /// 0006103 // 2-oxoglutarate metabolic process // inferred from electronic annotation /// 0006103 // 2-oxoglutarate metabolic process // not recorded /// 0006103 // 2-oxoglutarate metabolic process // inferred from sequence or structural similarity /// 0006740 // NADPH regeneration // not recorded /// 0006749 // glutathione metabolic process // inferred from electronic annotation /// 0006749 // glutathione metabolic process // not recorded /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0006979 // response to oxidative stress // not recorded /// 0008152 // metabolic process // not recorded /// 0008585 // female gonad development // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0048545 // response to steroid hormone stimulus // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000287 // magnesium ion binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0004450 // isocitrate dehydrogenase (NADP+) activity // inferred from direct assay /// 0004450 // isocitrate dehydrogenase (NADP+) activity // inferred from electronic annotation /// 0004450 // isocitrate dehydrogenase (NADP+) activity // not recorded /// 0004450 // isocitrate dehydrogenase (NADP+) activity // traceable author statement /// 0004450 // isocitrate dehydrogenase (NADP+) activity // inferred from sequence or structural similarity /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from direct assay /// 0051287 // NAD or NADH binding // inferred from electronic annotation 1394887_x_at AI407383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407383 /DB_XREF=gi:4250887 /DB_XREF=EST235672 /CLONE=ROVDY96 /FEA=EST /CNT=3 /TID=Rn.44022.1 /TIER=ConsEnd /STK=1 /UG=Rn.44022 /UG_TITLE=ESTs AI407383 1394888_at AW920350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920350 /DB_XREF=gi:8086159 /DB_XREF=EST351654 /CLONE=RGIGU48 /FEA=EST /CNT=3 /TID=Rn.56079.1 /TIER=ConsEnd /STK=1 /UG=Rn.56079 /UG_TITLE=ESTs AW920350 1394889_at AI408430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408430 /DB_XREF=gi:4251934 /DB_XREF=EST236720 /CLONE=ROVEP42 /FEA=EST /CNT=3 /TID=Rn.43417.1 /TIER=ConsEnd /STK=1 /UG=Rn.43417 /UG_TITLE=ESTs, Weakly similar to phosphorylase kinase, gamma 2 (testis) (Rattus norvegicus) (R.norvegicus) AI408430 death-associated kinase 2 Dapk2 300799 NM_001013109 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation 1394890_at AI234946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234946 /DB_XREF=gi:3828452 /DB_XREF=EST231508 /CLONE=ROVCJ92 /FEA=EST /CNT=3 /TID=Rn.55720.1 /TIER=ConsEnd /STK=1 /UG=Rn.55720 /UG_TITLE=ESTs AI234946 1394891_at BF548290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548290 /DB_XREF=gi:11639397 /DB_XREF=UI-R-A0-aq-a-02-0-UI.r1 /CLONE=UI-R-A0-aq-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.40304.1 /TIER=ConsEnd /STK=1 /UG=Rn.40304 /UG_TITLE=ESTs BF548290 Similar to hypothetical protein FLJ22965 RGD1564541 313433 NM_001107950 0005515 // protein binding // not recorded 1394892_at AI179741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179741 /DB_XREF=gi:3730379 /DB_XREF=EST223469 /CLONE=RSPCL10 /FEA=EST /CNT=3 /TID=Rn.55902.1 /TIER=ConsEnd /STK=1 /UG=Rn.55902 /UG_TITLE=ESTs, Weakly similar to A35364 carcinoembryonic antigen-related protein (R.norvegicus) AI179741 IGF-like family member 3 /// IGF-like family member 3-like Igfl3 /// LOC100362680 100362680 /// 361516 NM_001108474 /// XM_002728710 1394893_at BF401303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401303 /DB_XREF=gi:11389278 /DB_XREF=UI-R-CA0-bgs-b-03-0-UI.s1 /CLONE=UI-R-CA0-bgs-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.59775.1 /TIER=ConsEnd /STK=1 /UG=Rn.59775 /UG_TITLE=ESTs BF401303 1394894_at AW534121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534121 /DB_XREF=gi:7176535 /DB_XREF=UI-R-C4-alp-d-08-0-UI.s1 /CLONE=UI-R-C4-alp-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.48263.1 /TIER=ConsEnd /STK=1 /UG=Rn.48263 /UG_TITLE=ESTs AW534121 1394895_at AI548194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548194 /DB_XREF=gi:4465682 /DB_XREF=UI-R-C3-su-e-04-0-UI.s1 /CLONE=UI-R-C3-su-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.75868.1 /TIER=ConsEnd /STK=1 /UG=Rn.75868 /UG_TITLE=ESTs AI548194 1394896_at BF545092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545092 /DB_XREF=gi:11636199 /DB_XREF=UI-R-C2p-qt-d-04-0-UI.r1 /CLONE=UI-R-C2p-qt-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.39182.1 /TIER=ConsEnd /STK=1 /UG=Rn.39182 /UG_TITLE=ESTs BF545092 1394897_at AW528942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528942 /DB_XREF=gi:7171356 /DB_XREF=UI-R-BU0-amx-d-04-0-UI.s1 /CLONE=UI-R-BU0-amx-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.44864.1 /TIER=ConsEnd /STK=1 /UG=Rn.44864 /UG_TITLE=ESTs AW528942 downstream of Stk11 Dos 314622 NM_001108070 1394898_at BF286853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF286853 /DB_XREF=gi:11217923 /DB_XREF=EST451444 /CLONE=RGIFT47 /FEA=EST /CNT=3 /TID=Rn.30292.1 /TIER=ConsEnd /STK=1 /UG=Rn.30292 /UG_TITLE=ESTs BF286853 1394899_at BF543992 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543992 /DB_XREF=gi:11635099 /DB_XREF=UI-R-AD1-zu-d-10-0-UI.r1 /CLONE=UI-R-AD1-zu-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.44725.1 /TIER=ConsEnd /STK=1 /UG=Rn.44725 /UG_TITLE=ESTs, Moderately similar to Y182_HUMAN HYPOTHETICAL PROTEIN KIAA0182 (H.sapiens) BF543992 genetic suppressor element 1 Gse1 307913 XM_001078877 /// XM_226533 0005515 // protein binding // not recorded 1394900_at BF413876 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413876 /DB_XREF=gi:11401865 /DB_XREF=UI-R-CA0-boj-g-05-0-UI.s1 /CLONE=UI-R-CA0-boj-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.62484.1 /TIER=ConsEnd /STK=1 /UG=Rn.62484 /UG_TITLE=ESTs, Weakly similar to MAK RAT SERINETHREONINE-PROTEIN KINASE MAK (R.norvegicus) BF413876 1394901_at AI410234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410234 /DB_XREF=gi:4253738 /DB_XREF=EST238527 /CLONE=RKIDY22 /FEA=EST /CNT=3 /TID=Rn.43001.1 /TIER=ConsEnd /STK=1 /UG=Rn.43001 /UG_TITLE=ESTs AI410234 1394902_at AA996417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996417 /DB_XREF=gi:4280184 /DB_XREF=UI-R-C0-he-f-10-0-UI.s1 /CLONE=UI-R-C0-he-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.64531.1 /TIER=ConsEnd /STK=1 /UG=Rn.64531 /UG_TITLE=ESTs AA996417 1394903_at AI408180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408180 /DB_XREF=gi:4251684 /DB_XREF=EST236470 /CLONE=ROVEI74 /FEA=EST /CNT=3 /TID=Rn.43803.1 /TIER=ConsEnd /STK=1 /UG=Rn.43803 /UG_TITLE=ESTs AI408180 1394904_at BF392629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392629 /DB_XREF=gi:11377486 /DB_XREF=UI-R-CA0-bfl-d-09-0-UI.s1 /CLONE=UI-R-CA0-bfl-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.58356.1 /TIER=ConsEnd /STK=1 /UG=Rn.58356 /UG_TITLE=ESTs, Moderately similar to T08719 hypothetical protein DKFZp566B183.1 (H.sapiens) BF392629 NECAP endocytosis associated 1 Necap1 312694 NM_001029919 0006810 // transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0006897 // endocytosis // not recorded /// 0015031 // protein transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0005905 // coated pit // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030125 // clathrin vesicle coat // inferred from electronic annotation /// 0030125 // clathrin vesicle coat // not recorded /// 0030665 // clathrin coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394905_at AI177041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177041 /DB_XREF=gi:3727679 /DB_XREF=EST220648 /CLONE=ROVCA13 /FEA=EST /CNT=3 /TID=Rn.42291.1 /TIER=ConsEnd /STK=1 /UG=Rn.42291 /UG_TITLE=ESTs, Highly similar to T03455 ALR protein (H.sapiens) AI177041 myeloid/lymphoid or mixed-lineage leukemia 2 LOC100362634 100362634 XM_002729854 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1394906_at BF289997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289997 /DB_XREF=gi:11221079 /DB_XREF=EST454600 /CLONE=RGIHM62 /FEA=EST /CNT=3 /TID=Rn.55867.1 /TIER=ConsEnd /STK=1 /UG=Rn.55867 /UG_TITLE=ESTs BF289997 hypothetical protein LOC100125364 LOC100125364 100125364 NM_001103356 0005576 // extracellular region // inferred from electronic annotation 1394907_at AW920883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920883 /DB_XREF=gi:8086700 /DB_XREF=EST352187 /CLONE=RGIHH94 /FEA=EST /CNT=3 /TID=Rn.55785.1 /TIER=ConsEnd /STK=1 /UG=Rn.55785 /UG_TITLE=ESTs AW920883 1394908_at AW529671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529671 /DB_XREF=gi:7172085 /DB_XREF=UI-R-BU0-amr-a-01-0-UI.s1 /CLONE=UI-R-BU0-amr-a-01-0-UI /FEA=EST /CNT=4 /TID=Rn.47280.1 /TIER=ConsEnd /STK=1 /UG=Rn.47280 /UG_TITLE=ESTs AW529671 1394909_at BF387551 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387551 /DB_XREF=gi:11372375 /DB_XREF=UI-R-CA1-bbn-f-09-0-UI.s1 /CLONE=UI-R-CA1-bbn-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.54152.1 /TIER=ConsEnd /STK=1 /UG=Rn.54152 /UG_TITLE=ESTs, Weakly similar to T48686 hypothetical protein DKFZp761D1823.1 (H.sapiens) BF387551 rCG22278-like /// TBC1 domain family, member 8 LOC100364476 /// Tbc1d8 100364476 /// 680133 NM_001191067 /// XM_001055799 /// XM_002727189 /// XM_002727190 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1394910_at AI547469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547469 /DB_XREF=gi:4464957 /DB_XREF=UI-R-C3-sl-c-10-0-UI.s1 /CLONE=UI-R-C3-sl-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.67549.1 /TIER=ConsEnd /STK=1 /UG=Rn.67549 /UG_TITLE=ESTs AI547469 1394911_at AI235676 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235676 /DB_XREF=gi:3829182 /DB_XREF=EST232238 /CLONE=ROVCU88 /FEA=EST /CNT=3 /TID=Rn.55183.1 /TIER=ConsEnd /STK=1 /UG=Rn.55183 /UG_TITLE=ESTs AI235676 zinc finger CCCH-type, antiviral 1-like Zc3hav1l 362341 XM_001069306 /// XM_342661 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1394912_at BG377129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377129 /DB_XREF=gi:13301641 /DB_XREF=UI-R-CU0-bvb-c-09-0-UI.s1 /CLONE=UI-R-CU0-bvb-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.28500.1 /TIER=ConsEnd /STK=1 /UG=Rn.28500 /UG_TITLE=ESTs BG377129 similar to DNA segment, Chr 6, Wayne State University 163, expressed RGD1311164 297607 NM_001106623 1394913_at AW530163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530163 /DB_XREF=gi:7172577 /DB_XREF=UI-R-C4-ale-d-02-0-UI.s1 /CLONE=UI-R-C4-ale-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.47392.1 /TIER=ConsEnd /STK=1 /UG=Rn.47392 /UG_TITLE=ESTs AW530163 1394914_at AW528092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528092 /DB_XREF=gi:7170501 /DB_XREF=UI-R-BT1-akh-e-07-0-UI.s1 /CLONE=UI-R-BT1-akh-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.46767.1 /TIER=ConsEnd /STK=1 /UG=Rn.46767 /UG_TITLE=ESTs AW528092 1394915_at BF291136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291136 /DB_XREF=gi:11222206 /DB_XREF=EST455727 /CLONE=RGIIJ22 /FEA=EST /CNT=3 /TID=Rn.56043.1 /TIER=ConsEnd /STK=1 /UG=Rn.56043 /UG_TITLE=ESTs BF291136 1394916_at AW526714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526714 /DB_XREF=gi:7169128 /DB_XREF=UI-R-BT1-ake-b-12-0-UI.s1 /CLONE=UI-R-BT1-ake-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.46297.1 /TIER=ConsEnd /STK=1 /UG=Rn.46297 /UG_TITLE=ESTs AW526714 1394917_at AI145806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145806 /DB_XREF=gi:3667605 /DB_XREF=UI-R-BT0-qi-e-09-0-UI.s1 /CLONE=UI-R-BT0-qi-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.46167.1 /TIER=ConsEnd /STK=1 /UG=Rn.46167 /UG_TITLE=ESTs AI145806 1394918_at BF408338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408338 /DB_XREF=gi:11396313 /DB_XREF=UI-R-BJ2-brb-f-06-0-UI.s1 /CLONE=UI-R-BJ2-brb-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.61132.1 /TIER=ConsEnd /STK=1 /UG=Rn.61132 /UG_TITLE=ESTs, Weakly similar to S64312 hypothetical protein YGR021w - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BF408338 coiled-coil domain containing 44 Ccdc44 360645 NM_001108302 0006417 // regulation of translation // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation 1394919_at BF284043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284043 /DB_XREF=gi:11215113 /DB_XREF=EST448634 /CLONE=RGIEK29 /FEA=EST /CNT=3 /TID=Rn.28423.1 /TIER=ConsEnd /STK=1 /UG=Rn.28423 /UG_TITLE=ESTs BF284043 1394920_at AI556704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556704 /DB_XREF=gi:4489067 /DB_XREF=UI-R-C2p-rj-e-05-0-UI.s1 /CLONE=UI-R-C2p-rj-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.38620.1 /TIER=ConsEnd /STK=1 /UG=Rn.38620 /UG_TITLE=ESTs AI556704 1394921_at BF290064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290064 /DB_XREF=gi:11221134 /DB_XREF=EST454655 /CLONE=RGIHN32 /FEA=EST /CNT=3 /TID=Rn.55881.1 /TIER=ConsEnd /STK=1 /UG=Rn.55881 /UG_TITLE=ESTs, Highly similar to 5-AMP-activated protein kinase alpha-1 catalytic subunit (Rattus norvegicus) (R.norvegicus) BF290064 protein kinase, AMP-activated, alpha 1 catalytic subunit Prkaa1 65248 NM_019142 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // non-traceable author statement /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0006695 // cholesterol biosynthetic process // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0014823 // response to activity // inferred from direct assay /// 0016126 // sterol biosynthetic process // inferred from electronic annotation /// 0017148 // negative regulation of translation // non-traceable author statement /// 0019395 // fatty acid oxidation // not recorded /// 0019395 // fatty acid oxidation // inferred from electronic annotation /// 0031000 // response to caffeine // inferred from direct assay /// 0045722 // positive regulation of gluconeogenesis // non-traceable author statement /// 0046320 // regulation of fatty acid oxidation // not recorded /// 0046321 // positive regulation of fatty acid oxidation // non-traceable author statement /// 0046326 // positive regulation of glucose import // non-traceable author statement /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0060627 // regulation of vesicle-mediated transport // inferred from mutant phenotype /// 0070301 // cellular response to hydrogen peroxide // inferred from expression pattern /// 0071361 // cellular response to ethanol // inferred from expression pattern /// 0071417 // cellular response to organic nitrogen // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0031588 // AMP-activated protein kinase complex // inferred from direct assay /// 0031588 // AMP-activated protein kinase complex // inferred from mutant phenotype /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004679 // AMP-activated protein kinase activity // inferred from direct assay /// 0004679 // AMP-activated protein kinase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042557 // eukaryotic elongation factor-2 kinase activator activity // non-traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation 1394922_at AI716205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716205 /DB_XREF=gi:5033458 /DB_XREF=UI-R-Y0-abl-h-11-0-UI.s2 /CLONE=UI-R-Y0-abl-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.40751.1 /TIER=ConsEnd /STK=1 /UG=Rn.40751 /UG_TITLE=ESTs AI716205 1394923_at AW528728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528728 /DB_XREF=gi:7171142 /DB_XREF=UI-R-BO1-ajo-f-06-0-UI.s1 /CLONE=UI-R-BO1-ajo-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.76339.1 /TIER=ConsEnd /STK=1 /UG=Rn.76339 /UG_TITLE=ESTs AW528728 nuclear receptor interacting protein 2-like LOC100364151 100364151 XM_002726455 0006508 // proteolysis // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation 1394924_at AW530852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530852 /DB_XREF=gi:7173266 /DB_XREF=UI-R-BT1-aks-c-01-0-UI.s1 /CLONE=UI-R-BT1-aks-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.34512.1 /TIER=ConsEnd /STK=1 /UG=Rn.34512 /UG_TITLE=ESTs AW530852 membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) Mpp7 307035 XM_001061081 /// XM_225473 0005912 // adherens junction // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1394925_at AI578037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578037 /DB_XREF=gi:4562413 /DB_XREF=UI-R-Y0-vo-e-09-0-UI.s1 /CLONE=UI-R-Y0-vo-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.38552.1 /TIER=ConsEnd /STK=1 /UG=Rn.38552 /UG_TITLE=ESTs AI578037 similar to RIKEN cDNA 2310035C23 RGD1307235 309053 NM_001134546 0005488 // binding // inferred from electronic annotation 1394926_at AW527214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527214 /DB_XREF=gi:7169628 /DB_XREF=UI-R-BO1-ajm-g-08-0-UI.s1 /CLONE=UI-R-BO1-ajm-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.65573.1 /TIER=ConsEnd /STK=1 /UG=Rn.65573 /UG_TITLE=ESTs AW527214 1394927_at BF406642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406642 /DB_XREF=gi:11394617 /DB_XREF=UI-R-BJ2-bpv-d-12-0-UI.s1 /CLONE=UI-R-BJ2-bpv-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.47384.1 /TIER=ConsEnd /STK=1 /UG=Rn.47384 /UG_TITLE=ESTs BF406642 DnaJ (Hsp40) homolog, subfamily C, member 11 Dnajc11 362666 NM_001108694 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded 0031072 // heat shock protein binding // inferred from electronic annotation 1394928_at BG669146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669146 /DB_XREF=gi:13891053 /DB_XREF=DRN06A01 /CLONE=DRN06A01 /FEA=EST /CNT=3 /TID=Rn.46437.1 /TIER=ConsEnd /STK=1 /UG=Rn.46437 /UG_TITLE=ESTs BG669146 XK, Kell blood group complex subunit-related family, member 4 Xkr4 297801 NM_001011971 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1394929_at AI177154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177154 /DB_XREF=gi:3727792 /DB_XREF=EST220761 /CLONE=ROVCB52 /FEA=EST /CNT=3 /TID=Rn.55688.1 /TIER=ConsEnd /STK=1 /UG=Rn.55688 /UG_TITLE=ESTs AI177154 1394930_at BE109029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109029 /DB_XREF=gi:8501134 /DB_XREF=UI-R-BS1-azc-b-09-0-UI.s1 /CLONE=UI-R-BS1-azc-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.64997.1 /TIER=ConsEnd /STK=1 /UG=Rn.64997 /UG_TITLE=ESTs BE109029 1394931_at AI180361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180361 /DB_XREF=gi:3730999 /DB_XREF=EST224105 /CLONE=RSPCV35 /FEA=EST /CNT=3 /TID=Rn.65552.1 /TIER=ConsEnd /STK=1 /UG=Rn.65552 /UG_TITLE=ESTs, Weakly similar to T29715 hypothetical protein K02H8.1 - Caenorhabditis elegans (C.elegans) AI180361 muscleblind-like 2 Mbnl2 680445 NM_001111064 0000381 // regulation of alternative nuclear mRNA splicing, via spliceosome // inferred from electronic annotation /// 0006376 // mRNA splice site selection // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0043484 // regulation of RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0010494 // stress granule // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1394932_at AW534255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534255 /DB_XREF=gi:7176669 /DB_XREF=UI-R-BS0-anu-b-05-0-UI.s1 /CLONE=UI-R-BS0-anu-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.55065.1 /TIER=ConsEnd /STK=1 /UG=Rn.55065 /UG_TITLE=ESTs AW534255 1394933_at AI409647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409647 /DB_XREF=gi:4253151 /DB_XREF=EST237939 /CLONE=ROVEN92 /FEA=EST /CNT=3 /TID=Rn.43142.1 /TIER=ConsEnd /STK=1 /UG=Rn.43142 /UG_TITLE=ESTs AI409647 1394934_at BF403605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403605 /DB_XREF=gi:11391580 /DB_XREF=UI-R-CA1-bjd-j-14-0-UI.s1 /CLONE=UI-R-CA1-bjd-j-14-0-UI /FEA=EST /CNT=3 /TID=Rn.64296.1 /TIER=ConsEnd /STK=1 /UG=Rn.64296 /UG_TITLE=ESTs, Weakly similar to TC17 RAT TRANSCRIPTION FACTOR 17 (R.norvegicus) BF403605 zinc finger protein 709-like 2 Zfp709l2 362845 NM_001163062 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1394935_at AI175684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175684 /DB_XREF=gi:3726322 /DB_XREF=EST219244 /CLONE=ROVBD74 /FEA=EST /CNT=3 /TID=Rn.35284.1 /TIER=ConsEnd /STK=1 /UG=Rn.35284 /UG_TITLE=ESTs, Moderately similar to Y269_HUMAN HYPOTHETICAL PROLINE-RICH PROTEIN KIAA0269 (H.sapiens) AI175684 WAS protein family, member 2 Wasf2 313024 NM_001013167 0001525 // angiogenesis // not recorded /// 0001667 // ameboidal cell migration // not recorded /// 0006897 // endocytosis // not recorded /// 0006928 // cellular component movement // not recorded /// 0016601 // Rac protein signal transduction // not recorded /// 0030032 // lamellipodium assembly // not recorded /// 0030036 // actin cytoskeleton organization // not recorded /// 0030048 // actin filament-based movement // not recorded 0001726 // ruffle // not recorded /// 0005622 // intracellular // not recorded /// 0005769 // early endosome // not recorded /// 0030027 // lamellipodium // not recorded 1394936_at AW521480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521480 /DB_XREF=gi:7163905 /DB_XREF=UI-R-BO0-agn-e-09-0-UI.s1 /CLONE=UI-R-BO0-agn-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.69818.1 /TIER=ConsEnd /STK=1 /UG=Rn.69818 /UG_TITLE=ESTs AW521480 phosphatidylserine synthase 2 Ptdss2 293620 NM_001106316 0006659 // phosphatidylserine biosynthetic process // inferred from electronic annotation /// 0006659 // phosphatidylserine biosynthetic process // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 0003882 // CDP-diacylglycerol-serine O-phosphatidyltransferase activity // inferred from electronic annotation /// 0003882 // CDP-diacylglycerol-serine O-phosphatidyltransferase activity // not recorded 1394937_at BE112859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112859 /DB_XREF=gi:8504964 /DB_XREF=UI-R-CA0-axd-f-03-0-UI.s1 /CLONE=UI-R-CA0-axd-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.52126.1 /TIER=ConsEnd /STK=1 /UG=Rn.52126 /UG_TITLE=ESTs BE112859 1394938_at BI289446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289446 /DB_XREF=gi:14947026 /DB_XREF=UI-R-DK0-cfh-b-05-0-UI.s1 /CLONE=UI-R-DK0-cfh-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.79042.1 /TIER=ConsEnd /STK=1 /UG=Rn.79042 /UG_TITLE=ESTs BI289446 1394939_at BE116933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116933 /DB_XREF=gi:8509003 /DB_XREF=UI-R-BS1-azg-e-05-0-UI.s1 /CLONE=UI-R-BS1-azg-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.69437.1 /TIER=ConsEnd /STK=1 /UG=Rn.69437 /UG_TITLE=ESTs, Weakly similar to JC2524 phosphoprotein phosphatase (R.norvegicus) BE116933 protein phosphatase 1K (PP2C domain containing) Ppm1k 312381 NM_001107863 0006470 // protein dephosphorylation // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1394940_at BI294811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294811 /DB_XREF=gi:14957628 /DB_XREF=UI-R-DK0-cec-d-09-0-UI.s1 /CLONE=UI-R-DK0-cec-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.8439.1 /TIER=ConsEnd /STK=1 /UG=Rn.8439 /UG_TITLE=ESTs, Weakly similar to F55A12.9a.p (Caenorhabditis elegans) (C.elegans) BI294811 family with sequence similarity 46, member A Fam46a 300870 NM_001106844 1394941_at AW533289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533289 /DB_XREF=gi:7175703 /DB_XREF=UI-R-BU0-anf-b-05-0-UI.s1 /CLONE=UI-R-BU0-anf-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.48091.1 /TIER=ConsEnd /STK=1 /UG=Rn.48091 /UG_TITLE=ESTs AW533289 1394942_at AI408528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408528 /DB_XREF=gi:4252032 /DB_XREF=EST236818 /CLONE=ROVEQ34 /FEA=EST /CNT=2 /TID=Rn.43421.1 /TIER=ConsEnd /STK=1 /UG=Rn.43421 /UG_TITLE=ESTs AI408528 1394943_at AA893197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893197 /DB_XREF=gi:4132260 /DB_XREF=EST197000 /CLONE=RKIBD42 /FEA=EST /CNT=2 /TID=Rn.30141.1 /TIER=ConsEnd /STK=1 /UG=Rn.30141 /UG_TITLE=ESTs AA893197 Similar to tyrosine kinase-associated leucine zipper protein LAZipII RGD1565584 293112 NM_001106279 0006350 // transcription // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0009615 // response to virus // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0045814 // negative regulation of gene expression, epigenetic // not recorded /// 0051090 // regulation of transcription factor activity // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1394944_at AI410195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410195 /DB_XREF=gi:4253699 /DB_XREF=EST238488 /CLONE=RKIDZ33 /FEA=EST /CNT=2 /TID=Rn.43625.1 /TIER=ConsEnd /STK=1 /UG=Rn.43625 /UG_TITLE=ESTs AI410195 1394945_at BF396909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396909 /DB_XREF=gi:11381892 /DB_XREF=UI-R-BS2-bew-e-11-0-UI.s1 /CLONE=UI-R-BS2-bew-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.58712.1 /TIER=ConsEnd /STK=1 /UG=Rn.58712 /UG_TITLE=ESTs BF396909 CWF19-like 2, cell cycle control (S. pombe) Cwf19l2 362804 NM_001135003 0003824 // catalytic activity // inferred from electronic annotation 1394946_at BI289481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289481 /DB_XREF=gi:14947096 /DB_XREF=UI-R-DK0-cfh-e-10-0-UI.s1 /CLONE=UI-R-DK0-cfh-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.79043.1 /TIER=ConsEnd /STK=1 /UG=Rn.79043 /UG_TITLE=ESTs BI289481 hypothetical LOC292199 LOC292199 292199 NM_001144859 1394947_at BF392512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392512 /DB_XREF=gi:11377369 /DB_XREF=UI-R-CA0-bfk-a-12-0-UI.s1 /CLONE=UI-R-CA0-bfk-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.57842.1 /TIER=ConsEnd /STK=1 /UG=Rn.57842 /UG_TITLE=ESTs BF392512 NADPH oxidase organizer 1 Noxo1 302976 NM_001106986 0006801 // superoxide metabolic process // not recorded /// 0007154 // cell communication // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded 0043020 // NADPH oxidase complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016176 // superoxide-generating NADPH oxidase activator activity // not recorded /// 0019899 // enzyme binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1394948_at BI303527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303527 /DB_XREF=gi:14979807 /DB_XREF=UI-R-DQ0-cja-d-09-0-UI.s1 /CLONE=UI-R-DQ0-cja-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.77453.1 /TIER=ConsEnd /STK=1 /UG=Rn.77453 /UG_TITLE=ESTs BI303527 1394949_at BF399419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399419 /DB_XREF=gi:11384423 /DB_XREF=UI-R-CA1-bjb-f-09-0-UI.s1 /CLONE=UI-R-CA1-bjb-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.52003.1 /TIER=ConsEnd /STK=1 /UG=Rn.52003 /UG_TITLE=ESTs BF399419 1394950_at AI502833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502833 /DB_XREF=gi:4400684 /DB_XREF=UI-R-BT0-pl-b-08-0-UI.s1 /CLONE=UI-R-BT0-pl-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.34570.1 /TIER=ConsEnd /STK=1 /UG=Rn.34570 /UG_TITLE=ESTs AI502833 1394951_at BE107308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107308 /DB_XREF=gi:8499413 /DB_XREF=UI-R-BS1-ays-c-07-0-UI.s1 /CLONE=UI-R-BS1-ays-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.50014.1 /TIER=ConsEnd /STK=1 /UG=Rn.50014 /UG_TITLE=ESTs BE107308 1394952_at BF399794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399794 /DB_XREF=gi:11384804 /DB_XREF=UI-R-CA0-bhy-g-04-0-UI.s2 /CLONE=UI-R-CA0-bhy-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.76545.1 /TIER=ConsEnd /STK=1 /UG=Rn.76545 /UG_TITLE=ESTs BF399794 Hyaluronan and proteoglycan link protein 2 Hapln2 64057 NM_022285 0007155 // cell adhesion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // inferred from electronic annotation 1394953_at BF388068 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388068 /DB_XREF=gi:11372892 /DB_XREF=UI-R-CA1-bbx-h-07-0-UI.s1 /CLONE=UI-R-CA1-bbx-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.56674.1 /TIER=ConsEnd /STK=1 /UG=Rn.56674 /UG_TITLE=ESTs BF388068 1394954_at BE101666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101666 /DB_XREF=gi:8493764 /DB_XREF=UI-R-BT1-aqg-g-06-0-UI.s1 /CLONE=UI-R-BT1-aqg-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.49248.1 /TIER=ConsEnd /STK=1 /UG=Rn.49248 /UG_TITLE=ESTs, Weakly similar to COP1_RAT HIGH-AFFINITY COPPER UPTAKE PROTEIN 1 (RCTR1) (COPPER TRANSPORTER 1) (R.norvegicus) BE101666 solute carrier family 31 (copper transporters), member 2 Slc31a2 298091 NM_001033693 0006825 // copper ion transport // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0005375 // copper ion transmembrane transporter activity // inferred from electronic annotation 1394955_at BF407191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407191 /DB_XREF=gi:11395166 /DB_XREF=UI-R-BJ2-bqw-g-01-0-UI.s1 /CLONE=UI-R-BJ2-bqw-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.61018.1 /TIER=ConsEnd /STK=1 /UG=Rn.61018 /UG_TITLE=ESTs BF407191 1394956_at AA859238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859238 /DB_XREF=gi:4229595 /DB_XREF=UI-R-E0-cd-d-04-0-UI.s1 /CLONE=UI-R-E0-cd-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.32025.1 /TIER=ConsEnd /STK=1 /UG=Rn.32025 /UG_TITLE=ESTs AA859238 1394957_at BE108587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108587 /DB_XREF=gi:8500692 /DB_XREF=UI-R-CA0-axg-a-09-0-UI.s1 /CLONE=UI-R-CA0-axg-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.64698.1 /TIER=ConsEnd /STK=1 /UG=Rn.64698 /UG_TITLE=ESTs, Moderately similar to T17230 hypothetical protein DKFZp434E066.1 (H.sapiens) BE108587 nischarin Nisch 306255 XM_001057307 /// XM_001058707 /// XM_001058760 /// XM_240330 0006006 // glucose metabolic process // inferred from mutant phenotype /// 0006915 // apoptosis // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0008217 // regulation of blood pressure // inferred from mutant phenotype /// 0016601 // Rac protein signal transduction // not recorded /// 0030036 // actin cytoskeleton organization // not recorded /// 0030336 // negative regulation of cell migration // not recorded /// 0032228 // regulation of synaptic transmission, GABAergic // inferred from mutant phenotype /// 0048243 // norepinephrine secretion // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008227 // G-protein coupled amine receptor activity // inferred from direct assay /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1394958_at BF402345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402345 /DB_XREF=gi:11390320 /DB_XREF=UI-R-CA0-bhn-b-07-0-UI.s1 /CLONE=UI-R-CA0-bhn-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.60032.1 /TIER=ConsEnd /STK=1 /UG=Rn.60032 /UG_TITLE=ESTs BF402345 1394959_at AI502099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502099 /DB_XREF=gi:4399950 /DB_XREF=UI-R-C2p-rx-b-04-0-UI.s2 /CLONE=UI-R-C2p-rx-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.35611.1 /TIER=ConsEnd /STK=1 /UG=Rn.35611 /UG_TITLE=ESTs AI502099 1394960_at AA955070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955070 /DB_XREF=gi:4237899 /DB_XREF=UI-R-A1-ey-h-02-0-UI.s1 /CLONE=UI-R-A1-ey-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.32783.1 /TIER=ConsEnd /STK=1 /UG=Rn.32783 /UG_TITLE=ESTs, Weakly similar to 3BH1 RAT 3 BETA-HYDROXYSTEROID DEHYDROGENASEDELTA 5-->4-ISOMERASE TYPE I (R.norvegicus) AA955070 short chain dehydrogenase/reductase family 42E, member 1 Sdr42e1 307897 XM_001078486 /// XM_226509 0006694 // steroid biosynthetic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003854 // 3-beta-hydroxy-delta5-steroid dehydrogenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1394961_at BF398085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398085 /DB_XREF=gi:11383070 /DB_XREF=UI-R-BS2-bem-b-09-0-UI.s1 /CLONE=UI-R-BS2-bem-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.58970.1 /TIER=ConsEnd /STK=1 /UG=Rn.58970 /UG_TITLE=ESTs BF398085 1394962_at AI554981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI554981 /DB_XREF=gi:4487344 /DB_XREF=UI-R-C2p-qu-b-06-0-UI.s1 /CLONE=UI-R-C2p-qu-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.38801.1 /TIER=ConsEnd /STK=1 /UG=Rn.38801 /UG_TITLE=ESTs AI554981 1394963_at BG372371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372371 /DB_XREF=gi:13268908 /DB_XREF=UI-R-CV0-brr-h-09-0-UI.s1 /CLONE=UI-R-CV0-brr-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.66912.1 /TIER=ConsEnd /STK=1 /UG=Rn.66912 /UG_TITLE=ESTs, Moderately similar to GRF1_HUMAN G-RICH SEQUENCE FACTOR-1 (H.sapiens) BG372371 G-rich RNA sequence binding factor 1 Grsf1 305256 NM_001100890 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0016331 // morphogenesis of embryonic epithelium // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1394964_at BM389840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389840 /DB_XREF=gi:18189893 /DB_XREF=UI-R-CN1-cjp-n-09-0-UI.s1 /CLONE=UI-R-CN1-cjp-n-09-0-UI /FEA=EST /CNT=2 /TID=Rn.81254.1 /TIER=ConsEnd /STK=1 /UG=Rn.81254 /UG_TITLE=ESTs BM389840 BAT2 domain containing 1 Bat2d1 360865 XM_002724884 /// XM_341141 0008022 // protein C-terminus binding // not recorded 1394965_at BE099701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099701 /DB_XREF=gi:8491581 /DB_XREF=UI-R-BJ1-atk-c-11-0-UI.s1 /CLONE=UI-R-BJ1-atk-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.49891.1 /TIER=ConsEnd /STK=1 /UG=Rn.49891 /UG_TITLE=ESTs BE099701 clathrin interactor 1 Clint1 360515 NM_001002022 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0016044 // cellular membrane organization // not recorded /// 0048268 // clathrin coat assembly // inferred from mutant phenotype 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // not recorded /// 0030136 // clathrin-coated vesicle // inferred from direct assay 0030276 // clathrin binding // inferred from direct assay 1394966_at BE112594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112594 /DB_XREF=gi:8504699 /DB_XREF=UI-R-BJ1-avn-e-02-0-UI.s1 /CLONE=UI-R-BJ1-avn-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.52085.1 /TIER=ConsEnd /STK=1 /UG=Rn.52085 /UG_TITLE=ESTs BE112594 lipid phosphate phosphatase-related protein type 5 Lppr5 310812 NM_001107720 0016020 // membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation 1394967_at AI407816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407816 /DB_XREF=gi:4251320 /DB_XREF=EST236106 /CLONE=ROVDY56 /FEA=EST /CNT=2 /TID=Rn.43796.1 /TIER=ConsEnd /STK=1 /UG=Rn.43796 /UG_TITLE=ESTs AI407816 1394968_at BE117366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117366 /DB_XREF=gi:8509471 /DB_XREF=UI-R-BS1-ayn-h-11-0-UI.s1 /CLONE=UI-R-BS1-ayn-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.52830.1 /TIER=ConsEnd /STK=1 /UG=Rn.52830 /UG_TITLE=ESTs BE117366 1394969_at BF397625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397625 /DB_XREF=gi:11382609 /DB_XREF=UI-R-BS2-bfa-g-02-0-UI.s1 /CLONE=UI-R-BS2-bfa-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.58325.1 /TIER=ConsEnd /STK=1 /UG=Rn.58325 /UG_TITLE=ESTs BF397625 zinc finger protein 329 Zfp329 308361 NM_001107477 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1394970_at BI279660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279660 /DB_XREF=gi:14927688 /DB_XREF=UI-R-DE0-caf-b-08-0-UI.s1 /CLONE=UI-R-DE0-caf-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.77951.1 /TIER=ConsEnd /STK=1 /UG=Rn.77951 /UG_TITLE=ESTs, Moderately similar to SYC_HUMAN CYSTEINYL-TRNA SYNTHETASE (H.sapiens) BI279660 cysteinyl-tRNA synthetase Cars 293638 NM_001106319 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006423 // cysteinyl-tRNA aminoacylation // inferred from electronic annotation /// 0006423 // cysteinyl-tRNA aminoacylation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0000049 // tRNA binding // not recorded /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004817 // cysteine-tRNA ligase activity // inferred from electronic annotation /// 0004817 // cysteine-tRNA ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1394971_at BE119142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119142 /DB_XREF=gi:8511247 /DB_XREF=UI-R-CA0-azz-a-05-0-UI.s1 /CLONE=UI-R-CA0-azz-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.53147.1 /TIER=ConsEnd /STK=1 /UG=Rn.53147 /UG_TITLE=ESTs BE119142 1394972_at BM390782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390782 /DB_XREF=gi:18190835 /DB_XREF=UI-R-CN1-cjr-p-21-0-UI.s1 /CLONE=UI-R-CN1-cjr-p-21-0-UI /FEA=EST /CNT=2 /TID=Rn.74363.1 /TIER=ConsEnd /STK=1 /UG=Rn.74363 /UG_TITLE=ESTs BM390782 TROVE domain family, member 2 Trove2 304833 NM_001107183 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1394973_at BF410175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410175 /DB_XREF=gi:11398150 /DB_XREF=UI-R-CA1-bju-d-04-0-UI.s1 /CLONE=UI-R-CA1-bju-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.61606.1 /TIER=ConsEnd /STK=1 /UG=Rn.61606 /UG_TITLE=ESTs BF410175 1394974_at BE097831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097831 /DB_XREF=gi:8488762 /DB_XREF=UI-R-BO1-aqc-c-11-0-UI.s1 /CLONE=UI-R-BO1-aqc-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.49708.1 /TIER=ConsEnd /STK=1 /UG=Rn.49708 /UG_TITLE=ESTs BE097831 1394975_at BF396896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396896 /DB_XREF=gi:11381879 /DB_XREF=UI-R-BS2-bew-d-10-0-UI.s1 /CLONE=UI-R-BS2-bew-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.76523.1 /TIER=ConsEnd /STK=1 /UG=Rn.76523 /UG_TITLE=ESTs, Highly similar to JC4842 DNA-binding nuclear protein NP220 - mouse (M.musculus) BF396896 zinc finger, matrin-like Zfml 312491 NM_001107868 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1394976_at AI008980 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008980 /DB_XREF=gi:4132975 /DB_XREF=EST203431 /CLONE=REMBG54 /FEA=EST /CNT=2 /TID=Rn.43334.1 /TIER=ConsEnd /STK=1 /UG=Rn.43334 /UG_TITLE=ESTs AI008980 1394977_at BF415499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415499 /DB_XREF=gi:11403488 /DB_XREF=UI-R-CA1-bjz-f-11-0-UI.s1 /CLONE=UI-R-CA1-bjz-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.63878.1 /TIER=ConsEnd /STK=1 /UG=Rn.63878 /UG_TITLE=ESTs, Weakly similar to SOLUBLE EPOXIDE HYDROLASE (R.norvegicus) BF415499 epoxide hydrolase 4 Ephx4 289440 NM_001105994 0003824 // catalytic activity // inferred from electronic annotation 1394978_at AI412742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412742 /DB_XREF=gi:4256246 /DB_XREF=EST241041 /CLONE=RBRDS81 /FEA=EST /CNT=2 /TID=Rn.49028.1 /TIER=ConsEnd /STK=1 /UG=Rn.49028 /UG_TITLE=ESTs AI412742 1394979_at BE101703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101703 /DB_XREF=gi:8493801 /DB_XREF=UI-R-BO1-aps-c-04-0-UI.s1 /CLONE=UI-R-BO1-aps-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.49209.1 /TIER=ConsEnd /STK=1 /UG=Rn.49209 /UG_TITLE=ESTs BE101703 1394980_at BF409442 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409442 /DB_XREF=gi:11397381 /DB_XREF=UI-R-CA1-blf-f-09-0-UI.s1 /CLONE=UI-R-CA1-blf-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.65373.1 /TIER=ConsEnd /STK=1 /UG=Rn.65373 /UG_TITLE=ESTs BF409442 transmembrane protein 56 Tmem56 365924 NM_001135879 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1394981_at BI282102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282102 /DB_XREF=gi:14932513 /DB_XREF=UI-R-CU0s-cbw-e-11-0-UI.s1 /CLONE=UI-R-CU0s-cbw-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.78256.1 /TIER=ConsEnd /STK=1 /UG=Rn.78256 /UG_TITLE=ESTs BI282102 1394982_at BM383155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383155 /DB_XREF=gi:18183208 /DB_XREF=UI-R-DS0-cje-l-04-0-UI.s1 /CLONE=UI-R-DS0-cje-l-04-0-UI /FEA=EST /CNT=2 /TID=Rn.81291.1 /TIER=ConsEnd /STK=1 /UG=Rn.81291 /UG_TITLE=ESTs BM383155 TEL2, telomere maintenance 2, homolog (S. cerevisiae) Telo2 302986 XM_001059179 /// XM_220236 0005622 // intracellular // not recorded 0005515 // protein binding // not recorded 1394983_at BE108223 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108223 /DB_XREF=gi:8500293 /DB_XREF=UI-R-BS1-ayw-d-10-0-UI.s1 /CLONE=UI-R-BS1-ayw-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.51430.1 /TIER=ConsEnd /STK=1 /UG=Rn.51430 /UG_TITLE=ESTs BE108223 1394984_at BI297127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297127 /DB_XREF=gi:14962226 /DB_XREF=UI-R-DK0-cdt-f-08-0-UI.s1 /CLONE=UI-R-DK0-cdt-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.79874.1 /TIER=ConsEnd /STK=1 /UG=Rn.79874 /UG_TITLE=ESTs BI297127 trinucleotide repeat containing 6a Tnrc6a 308971 NM_001107549 0009267 // cellular response to starvation // not recorded /// 0035278 // negative regulation of translation involved in gene silencing by miRNA // not recorded 0035068 // micro-ribonucleoprotein complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1394985_at BI294752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294752 /DB_XREF=gi:14957512 /DB_XREF=UI-R-DK0-ceb-f-10-0-UI.s1 /CLONE=UI-R-DK0-ceb-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.56887.1 /TIER=ConsEnd /STK=1 /UG=Rn.56887 /UG_TITLE=ESTs, Weakly similar to S21801 myosin heavy chain, neuronal - rat (R.norvegicus) BI294752 early endosome antigen 1 Eea1 314764 NM_001108086 0006906 // vesicle fusion // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005769 // early endosome // not recorded /// 0005829 // cytosol // not recorded /// 0005969 // serine-pyruvate aminotransferase complex // not recorded /// 0019897 // extrinsic to plasma membrane // not recorded 0005515 // protein binding // not recorded /// 0005545 // phosphatidylinositol binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030742 // GTP-dependent protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1394986_at BE108719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108719 /DB_XREF=gi:8500824 /DB_XREF=UI-R-CA0-axh-f-07-0-UI.s1 /CLONE=UI-R-CA0-axh-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.47282.1 /TIER=ConsEnd /STK=1 /UG=Rn.47282 /UG_TITLE=ESTs BE108719 Family with sequence similarity 120B Fam120b 308218 NM_001107466 0005515 // protein binding // not recorded 1394987_at BE120450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120450 /DB_XREF=gi:8512555 /DB_XREF=UI-R-CA0-bam-f-02-0-UI.s1 /CLONE=UI-R-CA0-bam-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.53569.1 /TIER=ConsEnd /STK=1 /UG=Rn.53569 /UG_TITLE=ESTs BE120450 1394988_at BE109031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109031 /DB_XREF=gi:8501136 /DB_XREF=UI-R-BS1-azc-b-11-0-UI.s1 /CLONE=UI-R-BS1-azc-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.76126.1 /TIER=ConsEnd /STK=1 /UG=Rn.76126 /UG_TITLE=ESTs BE109031 1394989_at BI294446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294446 /DB_XREF=gi:14956904 /DB_XREF=UI-R-DK0-ceo-a-12-0-UI.s1 /CLONE=UI-R-DK0-ceo-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.79585.1 /TIER=ConsEnd /STK=1 /UG=Rn.79585 /UG_TITLE=ESTs BI294446 1394990_at BI301740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301740 /DB_XREF=gi:14978020 /DB_XREF=UI-R-DL0-cin-j-13-0-UI.s1 /CLONE=UI-R-DL0-cin-j-13-0-UI /FEA=EST /CNT=2 /TID=Rn.52524.1 /TIER=ConsEnd /STK=1 /UG=Rn.52524 /UG_TITLE=ESTs BI301740 1394991_at BG376154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376154 /DB_XREF=gi:13300626 /DB_XREF=UI-R-CT0-bun-b-06-0-UI.s1 /CLONE=UI-R-CT0-bun-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.73107.1 /TIER=ConsEnd /STK=1 /UG=Rn.73107 /UG_TITLE=ESTs, Highly similar to IRA1_MOUSE INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 1 (IRAK-1) (IRAK) (PELLE-LIKE PROTEIN KINASE) (MPLK) (M.musculus) BG376154 interleukin-1 receptor-associated kinase 1 Irak1 363520 NM_001127555 0001959 // regulation of cytokine-mediated signaling pathway // not recorded /// 0002237 // response to molecule of bacterial origin // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded /// 0007250 // activation of NF-kappaB-inducing kinase activity // not recorded /// 0007254 // JNK cascade // inferred from mutant phenotype /// 0010874 // regulation of cholesterol efflux // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from mutant phenotype /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0031663 // lipopolysaccharide-mediated signaling pathway // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0032494 // response to peptidoglycan // not recorded /// 0032496 // response to lipopolysaccharide // not recorded /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0034134 // toll-like receptor 2 signaling pathway // not recorded /// 0034142 // toll-like receptor 4 signaling pathway // not recorded /// 0043406 // positive regulation of MAP kinase activity // not recorded /// 0043507 // positive regulation of JUN kinase activity // not recorded /// 0045087 // innate immune response // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051259 // protein oligomerization // not recorded /// 0070498 // interleukin-1-mediated signaling pathway // not recorded /// 0070555 // response to interleukin-1 // not recorded 0005624 // membrane fraction // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005149 // interleukin-1 receptor binding // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1394992_at BF389891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389891 /DB_XREF=gi:11374729 /DB_XREF=UI-R-BS2-bdp-h-06-0-UI.s1 /CLONE=UI-R-BS2-bdp-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.57039.1 /TIER=ConsEnd /STK=1 /UG=Rn.57039 /UG_TITLE=ESTs BF389891 1394993_at AW531339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531339 /DB_XREF=gi:7173718 /DB_XREF=UI-R-C4-akw-c-06-0-UI.s1 /CLONE=UI-R-C4-akw-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.44928.1 /TIER=ConsEnd /STK=1 /UG=Rn.44928 /UG_TITLE=ESTs AW531339 1394994_at AA900222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900222 /DB_XREF=gi:4232713 /DB_XREF=UI-R-E0-dd-f-10-0-UI.s1 /CLONE=UI-R-E0-dd-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.32433.1 /TIER=ConsEnd /STK=1 /UG=Rn.32433 /UG_TITLE=ESTs AA900222 1394995_at BM385139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385139 /DB_XREF=gi:18185192 /DB_XREF=UI-R-CN1-cjm-h-06-0-UI.s2 /CLONE=UI-R-CN1-cjm-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.81530.1 /TIER=ConsEnd /STK=1 /UG=Rn.81530 /UG_TITLE=ESTs BM385139 1394996_at BF390127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390127 /DB_XREF=gi:11374970 /DB_XREF=UI-R-CA1-bcj-f-01-0-UI.s1 /CLONE=UI-R-CA1-bcj-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.57090.1 /TIER=ConsEnd /STK=1 /UG=Rn.57090 /UG_TITLE=ESTs BF390127 1394997_at AI409919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409919 /DB_XREF=gi:4253423 /DB_XREF=EST238212 /CLONE=RPLDN29 /FEA=EST /CNT=2 /TID=Rn.44169.1 /TIER=ConsEnd /STK=1 /UG=Rn.44169 /UG_TITLE=ESTs AI409919 1394998_at BI301433 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301433 /DB_XREF=gi:14977713 /DB_XREF=UI-R-DL0-cio-n-12-0-UI.s1 /CLONE=UI-R-DL0-cio-n-12-0-UI /FEA=EST /CNT=2 /TID=Rn.57015.1 /TIER=ConsEnd /STK=1 /UG=Rn.57015 /UG_TITLE=ESTs BI301433 1394999_at BI294721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294721 /DB_XREF=gi:14957452 /DB_XREF=UI-R-DK0-ceb-c-10-0-UI.s1 /CLONE=UI-R-DK0-ceb-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.79617.1 /TIER=ConsEnd /STK=1 /UG=Rn.79617 /UG_TITLE=ESTs BI294721 similar to RAB7-like protein RGD1562617 501854 NM_001109328 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1395000_at BG666908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666908 /DB_XREF=gi:13888830 /DB_XREF=DRACQC03 /CLONE=DRACQC03 /FEA=EST /CNT=2 /TID=Rn.66861.1 /TIER=ConsEnd /STK=1 /UG=Rn.66861 /UG_TITLE=ESTs BG666908 1395001_at AA900346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900346 /DB_XREF=gi:4232836 /DB_XREF=UI-R-E0-cp-g-06-0-UI.s2 /CLONE=UI-R-E0-cp-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.32446.1 /TIER=ConsEnd /STK=1 /UG=Rn.32446 /UG_TITLE=ESTs AA900346 1395002_at BF404368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404368 /DB_XREF=gi:11392343 /DB_XREF=UI-R-CA1-bie-c-11-0-UI.s1 /CLONE=UI-R-CA1-bie-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.58220.1 /TIER=ConsEnd /STK=1 /UG=Rn.58220 /UG_TITLE=ESTs BF404368 1395003_at BI278559 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278559 /DB_XREF=gi:14925524 /DB_XREF=UI-R-CW0-bxn-b-10-0-UI.s1 /CLONE=UI-R-CW0-bxn-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.49829.1 /TIER=ConsEnd /STK=1 /UG=Rn.49829 /UG_TITLE=ESTs, Weakly similar to KUCR RAT KUPFFER CELL RECEPTOR (R.norvegicus) BI278559 C-type lectin domain family 4, member a1 Clec4a1 362430 NM_001005890 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1395004_at BF397827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397827 /DB_XREF=gi:11382811 /DB_XREF=UI-R-BS2-bec-b-03-0-UI.s1 /CLONE=UI-R-BS2-bec-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.72548.1 /TIER=ConsEnd /STK=1 /UG=Rn.72548 /UG_TITLE=ESTs BF397827 1395005_at AI176817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176817 /DB_XREF=gi:3727455 /DB_XREF=EST220413 /CLONE=ROVBX18 /FEA=EST /CNT=2 /TID=Rn.33944.1 /TIER=ConsEnd /STK=1 /UG=Rn.33944 /UG_TITLE=ESTs AI176817 1395006_at BE121319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121319 /DB_XREF=gi:8513424 /DB_XREF=UI-R-CA0-baw-e-06-0-UI.s1 /CLONE=UI-R-CA0-baw-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.53807.1 /TIER=ConsEnd /STK=1 /UG=Rn.53807 /UG_TITLE=ESTs BE121319 1395007_at BE120572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120572 /DB_XREF=gi:8512677 /DB_XREF=UI-R-CA0-bav-b-03-0-UI.s1 /CLONE=UI-R-CA0-bav-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.53602.1 /TIER=ConsEnd /STK=1 /UG=Rn.53602 /UG_TITLE=ESTs BE120572 zinc finger protein 23 (KOX 16) Znf23 307839 NM_001107428 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395008_at BF406692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406692 /DB_XREF=gi:11394667 /DB_XREF=UI-R-BJ2-bpo-a-07-0-UI.s1 /CLONE=UI-R-BJ2-bpo-a-07-0-UI /FEA=EST /CNT=2 /TID=Rn.60992.1 /TIER=ConsEnd /STK=1 /UG=Rn.60992 /UG_TITLE=ESTs, Highly similar to ITSN_HUMAN INTERSECTIN (H.sapiens) BF406692 intersectin 1 (SH3 domain protein) Itsn1 29491 NM_001136096 /// NM_019227 0006887 // exocytosis // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0042327 // positive regulation of phosphorylation // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030139 // endocytic vesicle // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0019209 // kinase activator activity // not recorded 1395009_at BE097120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097120 /DB_XREF=gi:8488051 /DB_XREF=UI-R-BO1-apt-d-08-0-UI.s1 /CLONE=UI-R-BO1-apt-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.58082.1 /TIER=ConsEnd /STK=1 /UG=Rn.58082 /UG_TITLE=ESTs BE097120 1395010_at AI102173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102173 /DB_XREF=gi:3706982 /DB_XREF=EST211462 /CLONE=RBRCA14 /FEA=EST /CNT=2 /TID=Rn.55326.1 /TIER=ConsEnd /STK=1 /UG=Rn.55326 /UG_TITLE=ESTs AI102173 1395011_at BE107885 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107885 /DB_XREF=gi:8499990 /DB_XREF=UI-R-CA0-awx-h-12-0-UI.s1 /CLONE=UI-R-CA0-awx-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.51332.1 /TIER=ConsEnd /STK=1 /UG=Rn.51332 /UG_TITLE=ESTs BE107885 1395012_at BE106727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106727 /DB_XREF=gi:8498829 /DB_XREF=UI-R-BO1-asr-e-02-0-UI.s1 /CLONE=UI-R-BO1-asr-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.48842.1 /TIER=ConsEnd /STK=1 /UG=Rn.48842 /UG_TITLE=ESTs, Weakly similar to Y032_HUMAN HYPOTHETICAL PROTEIN KIAA0032 {SUB 5-1054 (H.sapiens) BE106727 hect domain and RLD 4 Herc4 309758 NM_001012074 0006464 // protein modification process // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1395013_at AW531495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531495 /DB_XREF=gi:7173909 /DB_XREF=UI-R-BO1-aji-f-07-0-UI.s1 /CLONE=UI-R-BO1-aji-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.64865.1 /TIER=ConsEnd /STK=1 /UG=Rn.64865 /UG_TITLE=ESTs, Weakly similar to T19323 hypothetical protein C16C10.2 - Caenorhabditis elegans (C.elegans) AW531495 similar to CGI-94 protein RGD1559610 313581 NM_001107978 0006364 // rRNA processing // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0048011 // nerve growth factor receptor signaling pathway // inferred from electronic annotation 0005615 // extracellular space // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0032040 // small-subunit processome // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1395014_at BI282068 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282068 /DB_XREF=gi:14932446 /DB_XREF=UI-R-CU0s-cbw-b-08-0-UI.s1 /CLONE=UI-R-CU0s-cbw-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.72088.1 /TIER=ConsEnd /STK=1 /UG=Rn.72088 /UG_TITLE=ESTs BI282068 1395015_at BE116550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116550 /DB_XREF=gi:8508655 /DB_XREF=UI-R-BS1-ayj-e-10-0-UI.s1 /CLONE=UI-R-BS1-ayj-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.52694.1 /TIER=ConsEnd /STK=1 /UG=Rn.52694 /UG_TITLE=ESTs BE116550 coagulation factor VIII, procoagulant component F8 302470 NM_183331 0007155 // cell adhesion // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from direct assay /// 0007597 // blood coagulation, intrinsic pathway // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0031093 // platelet alpha granule lumen // not recorded 0004252 // serine-type endopeptidase activity // inferred from direct assay /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395016_at BM388042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388042 /DB_XREF=gi:18188095 /DB_XREF=UI-R-CN1-cjl-k-15-0-UI.s1 /CLONE=UI-R-CN1-cjl-k-15-0-UI /FEA=EST /CNT=2 /TID=Rn.63187.1 /TIER=ConsEnd /STK=1 /UG=Rn.63187 /UG_TITLE=ESTs, Highly similar to 22P1 RAT CYSTATIN RELATED PROTEIN 1 PRECURSOR (R.norvegicus) BM388042 androgen regulated 20 kDa protein Andpro 25030 NM_012718 0030521 // androgen receptor signaling pathway // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1395017_at BG381427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381427 /DB_XREF=gi:13305899 /DB_XREF=UI-R-CT0-buj-b-11-0-UI.s1 /CLONE=UI-R-CT0-buj-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.33562.1 /TIER=ConsEnd /STK=1 /UG=Rn.33562 /UG_TITLE=ESTs BG381427 Mitochondrial ribosomal protein L15 Mrpl15 297799 NM_001106633 0006412 // translation // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1395018_at BE119004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119004 /DB_XREF=gi:8511109 /DB_XREF=UI-R-CA0-azx-c-09-0-UI.s1 /CLONE=UI-R-CA0-azx-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.69556.1 /TIER=ConsEnd /STK=1 /UG=Rn.69556 /UG_TITLE=ESTs, Weakly similar to T19334 hypothetical protein R74.1 - Caenorhabditis elegans (C.elegans) BE119004 leucyl-tRNA synthetase Lars 291624 NM_001009637 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006429 // leucyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004823 // leucine-tRNA ligase activity // inferred from electronic annotation /// 0004823 // leucine-tRNA ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1395019_at AI101440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101440 /DB_XREF=gi:3704645 /DB_XREF=EST210729 /CLONE=RBRBO75 /FEA=EST /CNT=2 /TID=Rn.27942.1 /TIER=ConsEnd /STK=1 /UG=Rn.27942 /UG_TITLE=ESTs AI101440 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1395020_at BI275435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275435 /DB_XREF=gi:14887288 /DB_XREF=UI-R-CX0-bww-d-12-0-UI.s1 /CLONE=UI-R-CX0-bww-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.80093.1 /TIER=ConsEnd /STK=1 /UG=Rn.80093 /UG_TITLE=ESTs BI275435 pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 Plekhh1 314262 NM_001108036 0005856 // cytoskeleton // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1395021_at AW533225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533225 /DB_XREF=gi:7175639 /DB_XREF=UI-R-BU0-ana-c-07-0-UI.s1 /CLONE=UI-R-BU0-ana-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.46273.1 /TIER=ConsEnd /STK=1 /UG=Rn.46273 /UG_TITLE=ESTs AW533225 1395022_at AA859303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859303 /DB_XREF=gi:4229654 /DB_XREF=UI-R-E0-cj-b-08-0-UI.s1 /CLONE=UI-R-E0-cj-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.32032.1 /TIER=ConsEnd /STK=1 /UG=Rn.32032 /UG_TITLE=ESTs, Weakly similar to JAK3 MOUSE TYROSINE-PROTEIN KINASE JAK3 (M.musculus) AA859303 1395023_at BF417891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417891 /DB_XREF=gi:11405880 /DB_XREF=UI-R-CA1-blu-e-06-0-UI.s1 /CLONE=UI-R-CA1-blu-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.63277.1 /TIER=ConsEnd /STK=1 /UG=Rn.63277 /UG_TITLE=ESTs BF417891 1395024_at BE119978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119978 /DB_XREF=gi:8512083 /DB_XREF=UI-R-CA0-bao-b-12-0-UI.s1 /CLONE=UI-R-CA0-bao-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.53415.1 /TIER=ConsEnd /STK=1 /UG=Rn.53415 /UG_TITLE=ESTs BE119978 1395025_at BE108461 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108461 /DB_XREF=gi:8500566 /DB_XREF=UI-R-CA0-axc-e-07-0-UI.s1 /CLONE=UI-R-CA0-axc-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.50744.1 /TIER=ConsEnd /STK=1 /UG=Rn.50744 /UG_TITLE=ESTs BE108461 1395026_at BI293319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293319 /DB_XREF=gi:14954710 /DB_XREF=UI-R-DK0-cdn-f-04-0-UI.s1 /CLONE=UI-R-DK0-cdn-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.79413.1 /TIER=ConsEnd /STK=1 /UG=Rn.79413 /UG_TITLE=ESTs, Weakly similar to DIMETHYLANILINE MONOOXYGENASE (R.norvegicus) BI293319 flavin containing monooxygenase 4 Fmo4 246247 NM_144561 /// NM_144562 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031227 // intrinsic to endoplasmic reticulum membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004497 // monooxygenase activity // non-traceable author statement /// 0004497 // monooxygenase activity // inferred from electronic annotation /// 0004499 // flavin-containing monooxygenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from electronic annotation 1395027_at BI290841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290841 /DB_XREF=gi:14949800 /DB_XREF=UI-R-DK0-cgi-b-01-0-UI.s1 /CLONE=UI-R-DK0-cgi-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.45112.1 /TIER=ConsEnd /STK=1 /UG=Rn.45112 /UG_TITLE=ESTs BI290841 1395028_at BF387767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387767 /DB_XREF=gi:11372632 /DB_XREF=UI-R-CA1-bbv-a-05-0-UI.s1 /CLONE=UI-R-CA1-bbv-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.61209.1 /TIER=ConsEnd /STK=1 /UG=Rn.61209 /UG_TITLE=ESTs BF387767 1395029_at BF567892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567892 /DB_XREF=gi:11677622 /DB_XREF=UI-R-BO0-aho-f-06-0-UI.r1 /CLONE=UI-R-BO0-aho-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.74132.1 /TIER=ConsEnd /STK=1 /UG=Rn.74132 /UG_TITLE=ESTs BF567892 1395030_at BM390366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390366 /DB_XREF=gi:18190413 /DB_XREF=UI-R-CN1-cjq-b-21-0-UI.s1 /CLONE=UI-R-CN1-cjq-b-21-0-UI /FEA=EST /CNT=2 /TID=Rn.82435.1 /TIER=ConsEnd /STK=1 /UG=Rn.82435 /UG_TITLE=ESTs BM390366 1395031_at BF398717 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398717 /DB_XREF=gi:11383757 /DB_XREF=UI-R-BS2-bes-e-04-0-UI.s1 /CLONE=UI-R-BS2-bes-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.70893.1 /TIER=ConsEnd /STK=1 /UG=Rn.70893 /UG_TITLE=ESTs BF398717 1395032_at AW531378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531378 /DB_XREF=gi:7173792 /DB_XREF=UI-R-BS0-amm-c-01-0-UI.s1 /CLONE=UI-R-BS0-amm-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.47695.1 /TIER=ConsEnd /STK=1 /UG=Rn.47695 /UG_TITLE=ESTs AW531378 1395033_at AI713019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI713019 /DB_XREF=gi:5016819 /DB_XREF=UI-R-Y0-abc-c-07-0-UI.s1 /CLONE=UI-R-Y0-abc-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.40725.1 /TIER=ConsEnd /STK=1 /UG=Rn.40725 /UG_TITLE=ESTs AI713019 1395034_at AI408816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408816 /DB_XREF=gi:4252320 /DB_XREF=EST237107 /CLONE=ROVEJ63 /FEA=EST /CNT=2 /TID=Rn.43613.1 /TIER=ConsEnd /STK=1 /UG=Rn.43613 /UG_TITLE=ESTs AI408816 1395035_at BM389765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389765 /DB_XREF=gi:18189818 /DB_XREF=UI-R-CN1-cjp-o-18-0-UI.s1 /CLONE=UI-R-CN1-cjp-o-18-0-UI /FEA=EST /CNT=2 /TID=Rn.48252.1 /TIER=ConsEnd /STK=1 /UG=Rn.48252 /UG_TITLE=ESTs BM389765 1395036_at BF386788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386788 /DB_XREF=gi:11371612 /DB_XREF=UI-R-CA1-bbh-d-12-0-UI.s1 /CLONE=UI-R-CA1-bbh-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.40648.1 /TIER=ConsEnd /STK=1 /UG=Rn.40648 /UG_TITLE=ESTs BF386788 inositol monophosphatase domain containing 1 Impad1 312952 NM_001008772 /// XM_001069864 /// XM_575759 0001501 // skeletal system development // not recorded /// 0001958 // endochondral ossification // not recorded /// 0002063 // chondrocyte development // not recorded /// 0009791 // post-embryonic development // not recorded /// 0016311 // dephosphorylation // not recorded /// 0030204 // chondroitin sulfate metabolic process // not recorded /// 0042733 // embryonic digit morphogenesis // not recorded 0005794 // Golgi apparatus // not recorded 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0008254 // 3'-nucleotidase activity // not recorded 1395037_at AI232989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232989 /DB_XREF=gi:3816869 /DB_XREF=EST229677 /CLONE=RKICJ54 /FEA=EST /CNT=2 /TID=Rn.29918.1 /TIER=ConsEnd /STK=1 /UG=Rn.29918 /UG_TITLE=ESTs AI232989 forkhead-associated (FHA) phosphopeptide binding domain 1 Fhad1 500577 NM_001044268 1395038_at BI279631 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279631 /DB_XREF=gi:14927631 /DB_XREF=UI-R-DE0-cae-h-01-0-UI.s1 /CLONE=UI-R-DE0-cae-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.77946.1 /TIER=ConsEnd /STK=1 /UG=Rn.77946 /UG_TITLE=ESTs BI279631 Coiled-coil domain containing 101 Ccdc101 293488 NM_001114502 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1395039_at BI289224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289224 /DB_XREF=gi:14946578 /DB_XREF=UI-R-DK0-cfj-d-09-0-UI.s1 /CLONE=UI-R-DK0-cfj-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.70464.1 /TIER=ConsEnd /STK=1 /UG=Rn.70464 /UG_TITLE=ESTs BI289224 1395040_at AI103846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103846 /DB_XREF=gi:3704857 /DB_XREF=EST213135 /CLONE=RHEBT81 /FEA=EST /CNT=2 /TID=Rn.33689.1 /TIER=ConsEnd /STK=1 /UG=Rn.33689 /UG_TITLE=ESTs AI103846 similar to Na+ dependent glucose transporter 1 RGD1561777 499463 XM_001063079 /// XM_574787 0055085 // transmembrane transport // inferred from electronic annotation 1395041_at BM385230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385230 /DB_XREF=gi:18185283 /DB_XREF=UI-R-EB1-clf-j-05-0-UI.s1 /CLONE=UI-R-EB1-clf-j-05-0-UI /FEA=EST /CNT=2 /TID=Rn.81556.1 /TIER=ConsEnd /STK=1 /UG=Rn.81556 /UG_TITLE=ESTs BM385230 microsomal triglyceride transfer protein Mttp 310900 NM_001107727 0006497 // protein lipidation // not recorded /// 0006629 // lipid metabolic process // not recorded /// 0006641 // triglyceride metabolic process // not recorded /// 0006869 // lipid transport // inferred from direct assay /// 0006869 // lipid transport // not recorded /// 0006869 // lipid transport // inferred from electronic annotation /// 0042157 // lipoprotein metabolic process // inferred from direct assay /// 0042157 // lipoprotein metabolic process // not recorded /// 0042632 // cholesterol homeostasis // inferred from expression pattern /// 0042632 // cholesterol homeostasis // not recorded /// 0042953 // lipoprotein transport // not recorded /// 0051592 // response to calcium ion // inferred from expression pattern 0005783 // endoplasmic reticulum // not recorded /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0016323 // basolateral plasma membrane // inferred from direct assay /// 0031526 // brush border membrane // inferred from direct assay /// 0031528 // microvillus membrane // inferred from direct assay /// 0031988 // membrane-bounded vesicle // inferred from direct assay 0005319 // lipid transporter activity // inferred from direct assay /// 0005319 // lipid transporter activity // inferred from electronic annotation /// 0005319 // lipid transporter activity // not recorded /// 0005515 // protein binding // not recorded /// 0034185 // apolipoprotein binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1395042_at BF285153 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285153 /DB_XREF=gi:11216223 /DB_XREF=EST449744 /CLONE=RGIFB15 /FEA=EST /CNT=2 /TID=Rn.28269.1 /TIER=ConsEnd /STK=1 /UG=Rn.28269 /UG_TITLE=ESTs, Weakly similar to POL2 MOUSE RETROVIRUS-RELATED POL POLYPROTEIN (M.musculus) BF285153 1395043_at BM385662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385662 /DB_XREF=gi:18185715 /DB_XREF=UI-R-DM1-ckd-p-22-0-UI.s1 /CLONE=UI-R-DM1-ckd-p-22-0-UI /FEA=EST /CNT=2 /TID=Rn.58450.1 /TIER=ConsEnd /STK=1 /UG=Rn.58450 /UG_TITLE=ESTs BM385662 1395044_at AI179766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179766 /DB_XREF=gi:3730404 /DB_XREF=EST223494 /CLONE=RSPCL48 /FEA=EST /CNT=2 /TID=Rn.34029.1 /TIER=ConsEnd /STK=1 /UG=Rn.34029 /UG_TITLE=ESTs AI179766 Hypothetical protein LOC688832 LOC688832 688832 XM_001068496 1395045_at BM384525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384525 /DB_XREF=gi:18184578 /DB_XREF=UI-R-CN1-cjs-f-17-0-UI.s2 /CLONE=UI-R-CN1-cjs-f-17-0-UI /FEA=EST /CNT=2 /TID=Rn.81447.1 /TIER=ConsEnd /STK=1 /UG=Rn.81447 /UG_TITLE=ESTs BM384525 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a) Ndufa7 299643 NM_001106772 0042773 // ATP synthesis coupled electron transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008083 // growth factor activity // inferred from electronic annotation /// 0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from electronic annotation 1395046_at BI276346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276346 /DB_XREF=gi:14921146 /DB_XREF=UI-R-CW0-bwp-a-12-0-UI.s1 /CLONE=UI-R-CW0-bwp-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.72198.1 /TIER=ConsEnd /STK=1 /UG=Rn.72198 /UG_TITLE=ESTs, Weakly similar to S68418 protein phosphatase 1M chain M110 isoform - rat (R.norvegicus) BI276346 ankyrin 1, erythrocytic Ank1 306570 NM_001107322 0006779 // porphyrin biosynthetic process // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0015672 // monovalent inorganic cation transport // not recorded /// 0048821 // erythrocyte development // not recorded 0005634 // nucleus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0014731 // spectrin-associated cytoskeleton // not recorded /// 0016020 // membrane // not recorded /// 0016529 // sarcoplasmic reticulum // inferred from direct assay /// 0019717 // synaptosome // inferred from direct assay /// 0030018 // Z disc // inferred from direct assay /// 0030673 // axolemma // inferred from direct assay /// 0030863 // cortical cytoskeleton // not recorded /// 0031430 // M band // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008093 // cytoskeletal adaptor activity // not recorded /// 0030507 // spectrin binding // not recorded 1395047_at BF397243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397243 /DB_XREF=gi:11382226 /DB_XREF=UI-R-BS2-bek-a-12-0-UI.s1 /CLONE=UI-R-BS2-bek-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.70766.1 /TIER=ConsEnd /STK=1 /UG=Rn.70766 /UG_TITLE=ESTs BF397243 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 Tnks2 309512 NM_001107607 0000723 // telomere maintenance // not recorded /// 0006471 // protein ADP-ribosylation // not recorded /// 0035264 // multicellular organism growth // not recorded /// 0040014 // regulation of multicellular organism growth // not recorded /// 0070198 // protein localization to chromosome, telomeric region // not recorded 0000242 // pericentriolar material // not recorded /// 0005634 // nucleus // not recorded /// 0005635 // nuclear envelope // not recorded /// 0005737 // cytoplasm // not recorded /// 0005792 // microsome // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from electronic annotation /// 0003950 // NAD+ ADP-ribosyltransferase activity // not recorded 1395048_at BM384985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384985 /DB_XREF=gi:18185038 /DB_XREF=UI-R-CN1-cjm-a-06-0-UI.s2 /CLONE=UI-R-CN1-cjm-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.79285.1 /TIER=ConsEnd /STK=1 /UG=Rn.79285 /UG_TITLE=ESTs BM384985 1395049_at BF391014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391014 /DB_XREF=gi:11375861 /DB_XREF=UI-R-CA1-bcf-b-10-0-UI.s1 /CLONE=UI-R-CA1-bcf-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.57358.1 /TIER=ConsEnd /STK=1 /UG=Rn.57358 /UG_TITLE=ESTs BF391014 1395050_at BE098619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098619 /DB_XREF=gi:8490483 /DB_XREF=UI-R-BJ1-asx-h-11-0-UI.s1 /CLONE=UI-R-BJ1-asx-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.81471.1 /TIER=ConsEnd /STK=1 /UG=Rn.81471 /UG_TITLE=ESTs BE098619 1395051_at AI136856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136856 /DB_XREF=gi:3637633 /DB_XREF=UI-R-C2p-of-c-08-0-UI.s1 /CLONE=UI-R-C2p-of-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.27243.1 /TIER=ConsEnd /STK=1 /UG=Rn.27243 /UG_TITLE=ESTs AI136856 1395052_at BE118917 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118917 /DB_XREF=gi:8511022 /DB_XREF=UI-R-BS1-azw-c-08-0-UI.s1 /CLONE=UI-R-BS1-azw-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.53085.1 /TIER=ConsEnd /STK=1 /UG=Rn.53085 /UG_TITLE=ESTs BE118917 1395053_at BE104755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104755 /DB_XREF=gi:8496855 /DB_XREF=UI-R-BX0-art-b-09-0-UI.s1 /CLONE=UI-R-BX0-art-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.68802.1 /TIER=ConsEnd /STK=1 /UG=Rn.68802 /UG_TITLE=ESTs BE104755 PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae) Pds5b 304218 NM_001101805 /// NM_001102383 0007049 // cell cycle // inferred from electronic annotation /// 0007064 // mitotic sister chromatid cohesion // not recorded /// 0007064 // mitotic sister chromatid cohesion // inferred from sequence or structural similarity /// 0007067 // mitosis // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0008285 // negative regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0051301 // cell division // inferred from electronic annotation 0000785 // chromatin // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1395054_at BF416262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416262 /DB_XREF=gi:11404251 /DB_XREF=UI-R-CA0-bkr-d-06-0-UI.s1 /CLONE=UI-R-CA0-bkr-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.62968.1 /TIER=ConsEnd /STK=1 /UG=Rn.62968 /UG_TITLE=ESTs BF416262 ubiquitin specific peptidase 29 Usp29 361495 NM_001108465 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1395055_at BE104822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104822 /DB_XREF=gi:8496922 /DB_XREF=UI-R-BX0-aru-a-10-0-UI.s1 /CLONE=UI-R-BX0-aru-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.50686.1 /TIER=ConsEnd /STK=1 /UG=Rn.50686 /UG_TITLE=ESTs BE104822 transmembrane protein 26 Tmem26 309724 NM_001107623 0016021 // integral to membrane // inferred from electronic annotation 1395056_at BM389046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389046 /DB_XREF=gi:18189099 /DB_XREF=UI-R-DZ0-cko-f-15-0-UI.s1 /CLONE=UI-R-DZ0-cko-f-15-0-UI /FEA=EST /CNT=2 /TID=Rn.82216.1 /TIER=ConsEnd /STK=1 /UG=Rn.82216 /UG_TITLE=ESTs BM389046 1395057_at BM389984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389984 /DB_XREF=gi:18190037 /DB_XREF=UI-R-CN1-cjo-g-14-0-UI.s1 /CLONE=UI-R-CN1-cjo-g-14-0-UI /FEA=EST /CNT=2 /TID=Rn.82358.1 /TIER=ConsEnd /STK=1 /UG=Rn.82358 /UG_TITLE=ESTs BM389984 1395058_at AI556441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556441 /DB_XREF=gi:4488804 /DB_XREF=UI-R-C2p-rh-f-04-0-UI.s1 /CLONE=UI-R-C2p-rh-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.38742.1 /TIER=ConsEnd /STK=1 /UG=Rn.38742 /UG_TITLE=ESTs, Moderately similar to T34531 hypothetical protein DKFZp434P1215.1 (H.sapiens) AI556441 WD repeat domain 75 Wdr75 314545 NM_001047889 1395059_at BE112187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112187 /DB_XREF=gi:8504292 /DB_XREF=UI-R-BJ1-avg-f-11-0-UI.s1 /CLONE=UI-R-BJ1-avg-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.69230.1 /TIER=ConsEnd /STK=1 /UG=Rn.69230 /UG_TITLE=ESTs BE112187 shroom family member 3 Shroom3 305230 NM_001100889 0000902 // cell morphogenesis // inferred from sequence or structural similarity /// 0001843 // neural tube closure // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0002066 // columnar/cuboidal epithelial cell development // inferred from electronic annotation /// 0002066 // columnar/cuboidal epithelial cell development // not recorded /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0043482 // cellular pigment accumulation // inferred from sequence or structural similarity /// 0045176 // apical protein localization // inferred from sequence or structural similarity 0005856 // cytoskeleton // inferred from electronic annotation /// 0005856 // cytoskeleton // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0043296 // apical junction complex // inferred from electronic annotation /// 0043296 // apical junction complex // not recorded /// 0045177 // apical part of cell // not recorded /// 0045177 // apical part of cell // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded 1395060_at AI764218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764218 /DB_XREF=gi:5210153 /DB_XREF=UI-R-Y0-acw-c-08-0-UI.s1 /CLONE=UI-R-Y0-acw-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.65329.1 /TIER=ConsEnd /STK=1 /UG=Rn.65329 /UG_TITLE=ESTs AI764218 1395061_at BE111797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111797 /DB_XREF=gi:8503902 /DB_XREF=UI-R-BJ1-avx-h-08-0-UI.s1 /CLONE=UI-R-BJ1-avx-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.69220.1 /TIER=ConsEnd /STK=1 /UG=Rn.69220 /UG_TITLE=ESTs, Weakly similar to REQN RAT ZINC-FINGER PROTEIN NEURO-D4 (R.norvegicus) BE111797 D4, zinc and double PHD fingers family 2 Dpf2 361711 NM_001108516 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395062_at BE101553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101553 /DB_XREF=gi:8493651 /DB_XREF=UI-R-BO1-apr-c-09-0-UI.s1 /CLONE=UI-R-BO1-apr-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.68517.1 /TIER=ConsEnd /STK=1 /UG=Rn.68517 /UG_TITLE=ESTs BE101553 calcium channel, voltage-dependent, P/Q type, alpha 1A subunit Cacna1a 25398 NM_012918 0000096 // sulfur amino acid metabolic process // inferred from electronic annotation /// 0000096 // sulfur amino acid metabolic process // not recorded /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from mutant phenotype /// 0006816 // calcium ion transport // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from sequence or structural similarity /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // not recorded /// 0007268 // synaptic transmission // inferred from mutant phenotype /// 0007268 // synaptic transmission // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007270 // nerve-nerve synaptic transmission // not recorded /// 0007270 // nerve-nerve synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0007416 // synapse assembly // inferred from electronic annotation /// 0007416 // synapse assembly // not recorded /// 0007628 // adult walking behavior // inferred from electronic annotation /// 0007628 // adult walking behavior // not recorded /// 0008219 // cell death // inferred from electronic annotation /// 0008219 // cell death // not recorded /// 0014051 // gamma-aminobutyric acid secretion // inferred from electronic annotation /// 0014051 // gamma-aminobutyric acid secretion // not recorded /// 0014056 // regulation of acetylcholine secretion // inferred from electronic annotation /// 0014056 // regulation of acetylcholine secretion // not recorded /// 0016049 // cell growth // inferred from electronic annotation /// 0016049 // cell growth // not recorded /// 0017156 // calcium ion-dependent exocytosis // not recorded /// 0017156 // calcium ion-dependent exocytosis // inferred from electronic annotation /// 0017158 // regulation of calcium ion-dependent exocytosis // inferred from electronic annotation /// 0017158 // regulation of calcium ion-dependent exocytosis // not recorded /// 0019226 // transmission of nerve impulse // not recorded /// 0019226 // transmission of nerve impulse // inferred from electronic annotation /// 0021522 // spinal cord motor neuron differentiation // inferred from electronic annotation /// 0021522 // spinal cord motor neuron differentiation // not recorded /// 0021590 // cerebellum maturation // inferred from electronic annotation /// 0021590 // cerebellum maturation // not recorded /// 0021679 // cerebellar molecular layer development // inferred from electronic annotation /// 0021679 // cerebellar molecular layer development // not recorded /// 0021680 // cerebellar Purkinje cell layer development // inferred from electronic annotation /// 0021680 // cerebellar Purkinje cell layer development // not recorded /// 0021702 // cerebellar Purkinje cell differentiation // inferred from electronic annotation /// 0021702 // cerebellar Purkinje cell differentiation // not recorded /// 0021750 // vestibular nucleus development // inferred from electronic annotation /// 0021750 // vestibular nucleus development // not recorded /// 0021953 // central nervous system neuron differentiation // not recorded /// 0021953 // central nervous system neuron differentiation // inferred from electronic annotation /// 0030644 // cellular chloride ion homeostasis // inferred from electronic annotation /// 0030644 // cellular chloride ion homeostasis // not recorded /// 0032353 // negative regulation of hormone biosynthetic process // inferred from electronic annotation /// 0032353 // negative regulation of hormone biosynthetic process // not recorded /// 0035249 // synaptic transmission, glutamatergic // inferred from electronic annotation /// 0035249 // synaptic transmission, glutamatergic // not recorded /// 0042133 // neurotransmitter metabolic process // inferred from electronic annotation /// 0042133 // neurotransmitter metabolic process // not recorded /// 0042391 // regulation of membrane potential // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042403 // thyroid hormone metabolic process // not recorded /// 0042445 // hormone metabolic process // inferred from electronic annotation /// 0042445 // hormone metabolic process // not recorded /// 0043113 // receptor clustering // inferred from electronic annotation /// 0043113 // receptor clustering // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0048265 // response to pain // not recorded /// 0048265 // response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // not recorded /// 0048791 // calcium ion-dependent exocytosis of neurotransmitter // inferred from electronic annotation /// 0048791 // calcium ion-dependent exocytosis of neurotransmitter // not recorded /// 0048813 // dendrite morphogenesis // inferred from electronic annotation /// 0048813 // dendrite morphogenesis // not recorded /// 0050770 // regulation of axonogenesis // inferred from electronic annotation /// 0050770 // regulation of axonogenesis // not recorded /// 0050877 // neurological system process // not recorded /// 0050877 // neurological system process // inferred from electronic annotation /// 0050883 // musculoskeletal movement, spinal reflex action // inferred from electronic annotation /// 0050883 // musculoskeletal movement, spinal reflex action // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0050905 // neuromuscular process // not recorded /// 0050905 // neuromuscular process // inferred from electronic annotation /// 0051899 // membrane depolarization // inferred from electronic annotation /// 0051899 // membrane depolarization // not recorded /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0051932 // synaptic transmission, GABAergic // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060024 // rhythmic synaptic transmission // inferred from electronic annotation /// 0060024 // rhythmic synaptic transmission // not recorded /// 0070588 // calcium ion transmembrane transport // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // inferred from direct assay /// 0005891 // voltage-gated calcium channel complex // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // not recorded /// 0005891 // voltage-gated calcium channel complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0042995 // cell projection // not recorded /// 0043025 // neuronal cell body // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043204 // perikaryon // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from direct assay /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // not recorded /// 0005245 // voltage-gated calcium channel activity // inferred from sequence or structural similarity /// 0005245 // voltage-gated calcium channel activity // traceable author statement /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from direct assay /// 0008331 // high voltage-gated calcium channel activity // inferred from electronic annotation /// 0008331 // high voltage-gated calcium channel activity // not recorded /// 0019905 // syntaxin binding // inferred from electronic annotation /// 0019905 // syntaxin binding // not recorded 1395063_at AA851300 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851300 /DB_XREF=gi:2938840 /DB_XREF=EST194068 /CLONE=RPLAE94 /FEA=EST /CNT=2 /TID=Rn.35669.1 /TIER=ConsEnd /STK=1 /UG=Rn.35669 /UG_TITLE=ESTs AA851300 Mitochondrial ribosomal protein L14 Mrpl14 301250 NM_001106890 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1395064_at BE118876 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118876 /DB_XREF=gi:8510981 /DB_XREF=UI-R-BS1-azv-g-06-0-UI.s1 /CLONE=UI-R-BS1-azv-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.28685.1 /TIER=ConsEnd /STK=1 /UG=Rn.28685 /UG_TITLE=ESTs BE118876 similar to 4930429A08Rik protein RGD1564943 500551 NM_001134628 1395065_at AW521367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521367 /DB_XREF=gi:7163745 /DB_XREF=UI-R-BO0-agl-f-10-0-UI.s1 /CLONE=UI-R-BO0-agl-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.43459.2 /TIER=ConsEnd /STK=1 /UG=Rn.43459 /UG_TITLE=ESTs AW521367 WD repeat domain 41 Wdr41 361879 NM_001108541 1395066_at BF416024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416024 /DB_XREF=gi:11404013 /DB_XREF=UI-R-CA0-bkh-c-09-0-UI.s1 /CLONE=UI-R-CA0-bkh-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.76260.1 /TIER=ConsEnd /STK=1 /UG=Rn.76260 /UG_TITLE=ESTs BF416024 nucleolar protein 4 Nol4 307553 NM_001107401 1395067_at BE120118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120118 /DB_XREF=gi:8512223 /DB_XREF=UI-R-CA0-bak-g-08-0-UI.s1 /CLONE=UI-R-CA0-bak-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.53075.1 /TIER=ConsEnd /STK=1 /UG=Rn.53075 /UG_TITLE=ESTs BE120118 1395068_at BE121345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121345 /DB_XREF=gi:8513450 /DB_XREF=UI-R-CA0-baw-h-01-0-UI.s1 /CLONE=UI-R-CA0-baw-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.65402.1 /TIER=ConsEnd /STK=1 /UG=Rn.65402 /UG_TITLE=ESTs BE121345 Similar to mKIAA1644 protein RGD1566029 500913 XM_001078061 /// XM_576321 1395069_at BF400622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400622 /DB_XREF=gi:11388597 /DB_XREF=UI-R-CA0-bhd-e-11-0-UI.s1 /CLONE=UI-R-CA0-bhd-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.82625.1 /TIER=ConsEnd /STK=1 /UG=Rn.82625 /UG_TITLE=ESTs, Weakly similar to RENAL TRANSCRIPTION FACTOR KID-1 (R.norvegicus) BF400622 1395070_at AI136959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136959 /DB_XREF=gi:3637736 /DB_XREF=UI-R-C2p-nz-c-09-0-UI.s1 /CLONE=UI-R-C2p-nz-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.27277.1 /TIER=ConsEnd /STK=1 /UG=Rn.27277 /UG_TITLE=ESTs AI136959 1395071_at AI010512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010512 /DB_XREF=gi:3224344 /DB_XREF=EST204963 /CLONE=RMUAN36 /FEA=EST /CNT=2 /TID=Rn.39069.1 /TIER=ConsEnd /STK=1 /UG=Rn.39069 /UG_TITLE=ESTs AI010512 zinc finger and BTB domain containing 6 Zbtb6 366029 NM_001108953 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395072_at AW534686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534686 /DB_XREF=gi:7177100 /DB_XREF=UI-R-BS0-ant-f-10-0-UI.s1 /CLONE=UI-R-BS0-ant-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.51189.1 /TIER=ConsEnd /STK=1 /UG=Rn.51189 /UG_TITLE=ESTs AW534686 1395073_at BI288681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288681 /DB_XREF=gi:14945504 /DB_XREF=UI-R-DK0-cdd-f-12-0-UI.s1 /CLONE=UI-R-DK0-cdd-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.78928.1 /TIER=ConsEnd /STK=1 /UG=Rn.78928 /UG_TITLE=ESTs BI288681 1395074_at BI290959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290959 /DB_XREF=gi:14950040 /DB_XREF=UI-R-DK0-cgb-f-08-0-UI.s1 /CLONE=UI-R-DK0-cgb-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.79209.1 /TIER=ConsEnd /STK=1 /UG=Rn.79209 /UG_TITLE=ESTs, Highly similar to TDG MOUSE GT MISMATCH-SPECIFIC THYMINE DNA GLYCOSYLASE (M.musculus) BI290959 Thymine-DNA glycosylase Tdg 114521 NM_053729 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0006281 // DNA repair // inferred from electronic annotation /// 0006298 // mismatch repair // inferred from electronic annotation /// 0045008 // depyrimidination // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0016605 // PML body // not recorded 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // inferred from direct assay /// 0016564 // transcription repressor activity // inferred from direct assay /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0016799 // hydrolase activity, hydrolyzing N-glycosyl compounds // inferred from electronic annotation /// 0019104 // DNA N-glycosylase activity // not recorded /// 0019904 // protein domain specific binding // inferred from direct assay /// 0030983 // mismatched DNA binding // inferred from electronic annotation /// 0032183 // SUMO binding // not recorded 1395075_at BF404541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404541 /DB_XREF=gi:11392481 /DB_XREF=UI-R-CA1-big-c-03-0-UI.s1 /CLONE=UI-R-CA1-big-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.60530.1 /TIER=ConsEnd /STK=1 /UG=Rn.60530 /UG_TITLE=ESTs BF404541 1395076_at BE117804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117804 /DB_XREF=gi:8509909 /DB_XREF=UI-R-BS1-azh-b-12-0-UI.s1 /CLONE=UI-R-BS1-azh-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.65735.1 /TIER=ConsEnd /STK=1 /UG=Rn.65735 /UG_TITLE=ESTs BE117804 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) Runx1t1 362489 NM_001108657 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0045444 // fat cell differentiation // not recorded /// 0051101 // regulation of DNA binding // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1395077_at BE119312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119312 /DB_XREF=gi:8511417 /DB_XREF=UI-R-CA0-bah-a-03-0-UI.s1 /CLONE=UI-R-CA0-bah-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.81257.1 /TIER=ConsEnd /STK=1 /UG=Rn.81257 /UG_TITLE=ESTs BE119312 1395078_at AI547430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547430 /DB_XREF=gi:4464918 /DB_XREF=UI-R-C3-tk-d-02-0-UI.s1 /CLONE=UI-R-C3-tk-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.32183.1 /TIER=ConsEnd /STK=1 /UG=Rn.32183 /UG_TITLE=ESTs AI547430 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G Sema3g 290562 NM_001100882 0007275 // multicellular organismal development // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1395079_at AI454784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454784 /DB_XREF=gi:4296147 /DB_XREF=UI-R-C2p-qm-c-09-0-UI.s1 /CLONE=UI-R-C2p-qm-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.54762.1 /TIER=ConsEnd /STK=1 /UG=Rn.54762 /UG_TITLE=ESTs AI454784 1395080_at BF389061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389061 /DB_XREF=gi:11373888 /DB_XREF=UI-R-BS2-bdh-d-05-0-UI.s1 /CLONE=UI-R-BS2-bdh-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.65224.1 /TIER=ConsEnd /STK=1 /UG=Rn.65224 /UG_TITLE=ESTs BF389061 1395081_at BI290843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290843 /DB_XREF=gi:14949804 /DB_XREF=UI-R-DK0-cgi-b-05-0-UI.s1 /CLONE=UI-R-DK0-cgi-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.79194.1 /TIER=ConsEnd /STK=1 /UG=Rn.79194 /UG_TITLE=ESTs BI290843 1395082_at AI763982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763982 /DB_XREF=gi:5209917 /DB_XREF=UI-R-Y0-acv-d-10-0-UI.s1 /CLONE=UI-R-Y0-acv-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.41662.1 /TIER=ConsEnd /STK=1 /UG=Rn.41662 /UG_TITLE=ESTs AI763982 cleavage and polyadenylation specific factor 6 Cpsf6 299811 NM_001106785 0006397 // mRNA processing // not recorded 0005849 // mRNA cleavage factor complex // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0042382 // paraspeckles // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // not recorded 1395083_at AA926313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926313 /DB_XREF=gi:4237504 /DB_XREF=UI-R-A1-el-g-02-0-UI.s1 /CLONE=UI-R-A1-el-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.32739.1 /TIER=ConsEnd /STK=1 /UG=Rn.32739 /UG_TITLE=ESTs AA926313 1395084_at AI179556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179556 /DB_XREF=gi:3730194 /DB_XREF=EST223277 /CLONE=RSPCI88 /FEA=EST /CNT=2 /TID=Rn.29312.1 /TIER=ConsEnd /STK=1 /UG=Rn.29312 /UG_TITLE=ESTs AI179556 1395085_at BF386354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386354 /DB_XREF=gi:11371178 /DB_XREF=UI-R-CA1-bbi-e-07-0-UI.s1 /CLONE=UI-R-CA1-bbi-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.72923.1 /TIER=ConsEnd /STK=1 /UG=Rn.72923 /UG_TITLE=ESTs BF386354 1395086_at BI293086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293086 /DB_XREF=gi:14954245 /DB_XREF=UI-R-DK0-cdp-d-02-0-UI.s1 /CLONE=UI-R-DK0-cdp-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.72317.1 /TIER=ConsEnd /STK=1 /UG=Rn.72317 /UG_TITLE=ESTs BI293086 protein associated with topoisomerase II homolog 1 (yeast) Patl1 361736 NM_001108520 0016853 // isomerase activity // inferred from electronic annotation 1395087_at BE107412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107412 /DB_XREF=gi:8499517 /DB_XREF=UI-R-BS1-ayt-d-08-0-UI.s1 /CLONE=UI-R-BS1-ayt-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.46384.1 /TIER=ConsEnd /STK=1 /UG=Rn.46384 /UG_TITLE=ESTs BE107412 1395088_at AI406814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406814 /DB_XREF=gi:4250318 /DB_XREF=EST235101 /CLONE=RBRDI89 /FEA=EST /CNT=2 /TID=Rn.43587.1 /TIER=ConsEnd /STK=1 /UG=Rn.43587 /UG_TITLE=ESTs AI406814 1395089_at BF390878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390878 /DB_XREF=gi:11375725 /DB_XREF=UI-R-CA1-bci-e-07-0-UI.s1 /CLONE=UI-R-CA1-bci-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.76140.1 /TIER=ConsEnd /STK=1 /UG=Rn.76140 /UG_TITLE=ESTs BF390878 1395090_at BE102987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102987 /DB_XREF=gi:8495086 /DB_XREF=UI-R-BT1-aqu-h-07-0-UI.s1 /CLONE=UI-R-BT1-aqu-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.28486.1 /TIER=ConsEnd /STK=1 /UG=Rn.28486 /UG_TITLE=ESTs, Weakly similar to ASTN_MOUSE ASTROTACTIN (NEURONAL MIGRATION PROTEIN GC14) (M.musculus) BE102987 astrotactin 2-like LOC100361323 100361323 XM_002726539 /// XM_002729488 1395091_at BE095757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095757 /DB_XREF=gi:8486682 /DB_XREF=UI-R-BU0-aoz-a-04-0-UI.s1 /CLONE=UI-R-BU0-aoz-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.49358.1 /TIER=ConsEnd /STK=1 /UG=Rn.49358 /UG_TITLE=ESTs BE095757 1395092_at BM388276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388276 /DB_XREF=gi:18188329 /DB_XREF=UI-R-DM1-cjz-o-04-0-UI.s1 /CLONE=UI-R-DM1-cjz-o-04-0-UI /FEA=EST /CNT=2 /TID=Rn.82156.1 /TIER=ConsEnd /STK=1 /UG=Rn.82156 /UG_TITLE=ESTs BM388276 1395093_at AI145025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145025 /DB_XREF=gi:3666824 /DB_XREF=UI-R-BT0-pr-f-08-0-UI.s1 /CLONE=UI-R-BT0-pr-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.27775.1 /TIER=ConsEnd /STK=1 /UG=Rn.27775 /UG_TITLE=ESTs, Weakly similar to S21347 hypothetical protein 3 - rat (R.norvegicus) AI145025 1395094_at BF549339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549339 /DB_XREF=gi:11640446 /DB_XREF=UI-R-A0-ar-a-05-0-UI.r1 /CLONE=UI-R-A0-ar-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.32242.1 /TIER=ConsEnd /STK=1 /UG=Rn.32242 /UG_TITLE=ESTs BF549339 1395095_at BF407976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407976 /DB_XREF=gi:11395951 /DB_XREF=UI-R-BJ2-bqy-d-11-0-UI.s1 /CLONE=UI-R-BJ2-bqy-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.61106.1 /TIER=ConsEnd /STK=1 /UG=Rn.61106 /UG_TITLE=ESTs, Weakly similar to T43494 hypothetical protein DKFZp434C229.1 (H.sapiens) BF407976 leucine zipper-EF-hand containing transmembrane protein 2 Letm2 361169 NM_001012158 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1395096_at BE098725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098725 /DB_XREF=gi:8490593 /DB_XREF=UI-R-BJ1-atd-b-12-0-UI.s1 /CLONE=UI-R-BJ1-atd-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.26526.1 /TIER=ConsEnd /STK=1 /UG=Rn.26526 /UG_TITLE=ESTs BE098725 1395097_at BE097124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097124 /DB_XREF=gi:8488055 /DB_XREF=UI-R-BO1-apt-d-12-0-UI.s1 /CLONE=UI-R-BO1-apt-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.49542.1 /TIER=ConsEnd /STK=1 /UG=Rn.49542 /UG_TITLE=ESTs BE097124 1395098_at BF390143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390143 /DB_XREF=gi:11374986 /DB_XREF=UI-R-CA1-bcj-g-06-0-UI.s1 /CLONE=UI-R-CA1-bcj-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.53397.1 /TIER=ConsEnd /STK=1 /UG=Rn.53397 /UG_TITLE=ESTs BF390143 basic leucine zipper nuclear factor 1 Blzf1 498266 NM_001017494 0007030 // Golgi organization // not recorded /// 0043001 // Golgi to plasma membrane protein transport // not recorded 0000139 // Golgi membrane // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005794 // Golgi apparatus // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1395099_at AI176297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176297 /DB_XREF=gi:3726935 /DB_XREF=EST219879 /CLONE=ROVBP70 /FEA=EST /CNT=2 /TID=Rn.56978.1 /TIER=ConsEnd /STK=1 /UG=Rn.56978 /UG_TITLE=ESTs AI176297 1395100_at BI286690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286690 /DB_XREF=gi:14941580 /DB_XREF=UI-R-CT0s-caq-d-11-0-UI.s1 /CLONE=UI-R-CT0s-caq-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.60524.1 /TIER=ConsEnd /STK=1 /UG=Rn.60524 /UG_TITLE=ESTs, Weakly similar to 2020285A BRG1 protein (M.musculus) BI286690 polybromo 1 Pbrm1 306254 XM_001059164 /// XM_240329 0001890 // placenta development // not recorded /// 0007507 // heart development // not recorded 0000776 // kinetochore // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0005515 // protein binding // not recorded 1395101_at BF396757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396757 /DB_XREF=gi:11381738 /DB_XREF=UI-R-BS2-beu-g-10-0-UI.s1 /CLONE=UI-R-BS2-beu-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.62284.1 /TIER=ConsEnd /STK=1 /UG=Rn.62284 /UG_TITLE=ESTs BF396757 1395102_at AW528917 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528917 /DB_XREF=gi:7171336 /DB_XREF=UI-R-BU0-amx-b-03-0-UI.s1 /CLONE=UI-R-BU0-amx-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.46978.1 /TIER=ConsEnd /STK=1 /UG=Rn.46978 /UG_TITLE=ESTs AW528917 potassium channel, subfamily T, member 1 Kcnt1 60444 NM_021853 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from direct assay /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from direct assay /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0015269 // calcium-activated potassium channel activity // inferred from electronic annotation 1395103_at BF397372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397372 /DB_XREF=gi:11382355 /DB_XREF=UI-R-BS2-bex-f-01-0-UI.s1 /CLONE=UI-R-BS2-bex-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.58809.1 /TIER=ConsEnd /STK=1 /UG=Rn.58809 /UG_TITLE=ESTs BF397372 1395104_at BF390608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390608 /DB_XREF=gi:11375455 /DB_XREF=UI-R-CA1-bck-b-04-0-UI.s1 /CLONE=UI-R-CA1-bck-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.80855.1 /TIER=ConsEnd /STK=1 /UG=Rn.80855 /UG_TITLE=ESTs BF390608 1395105_at AW527267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527267 /DB_XREF=gi:7169681 /DB_XREF=UI-R-BO1-ajs-d-04-0-UI.s1 /CLONE=UI-R-BO1-ajs-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.46478.1 /TIER=ConsEnd /STK=1 /UG=Rn.46478 /UG_TITLE=ESTs AW527267 CWF19-like 2, cell cycle control (S. pombe) Cwf19l2 362804 NM_001135003 0003824 // catalytic activity // inferred from electronic annotation 1395106_at BG381322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381322 /DB_XREF=gi:13305794 /DB_XREF=UI-R-CT0-bui-g-12-0-UI.s1 /CLONE=UI-R-CT0-bui-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.51159.1 /TIER=ConsEnd /STK=1 /UG=Rn.51159 /UG_TITLE=ESTs BG381322 1395107_at BF416514 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416514 /DB_XREF=gi:11404503 /DB_XREF=UI-R-CA0-bkk-e-08-0-UI.s1 /CLONE=UI-R-CA0-bkk-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.63050.1 /TIER=ConsEnd /STK=1 /UG=Rn.63050 /UG_TITLE=ESTs BF416514 1395108_at BE104922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104922 /DB_XREF=gi:8497023 /DB_XREF=UI-R-BX0-arw-c-05-0-UI.s1 /CLONE=UI-R-BX0-arw-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.72616.1 /TIER=ConsEnd /STK=1 /UG=Rn.72616 /UG_TITLE=ESTs BE104922 1395109_at BE117709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117709 /DB_XREF=gi:8509814 /DB_XREF=UI-R-BS1-azf-a-05-0-UI.s1 /CLONE=UI-R-BS1-azf-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.76529.1 /TIER=ConsEnd /STK=1 /UG=Rn.76529 /UG_TITLE=ESTs BE117709 1395110_at BE110272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110272 /DB_XREF=gi:8502377 /DB_XREF=UI-R-CA0-axl-a-10-0-UI.s1 /CLONE=UI-R-CA0-axl-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.50434.1 /TIER=ConsEnd /STK=1 /UG=Rn.50434 /UG_TITLE=ESTs BE110272 1395111_at AI454738 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454738 /DB_XREF=gi:4295825 /DB_XREF=UI-R-C2p-qj-e-07-0-UI.s1 /CLONE=UI-R-C2p-qj-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.72557.1 /TIER=ConsEnd /STK=1 /UG=Rn.72557 /UG_TITLE=ESTs AI454738 1395112_at AI555810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555810 /DB_XREF=gi:4488173 /DB_XREF=UI-R-C2p-qz-g-01-0-UI.s1 /CLONE=UI-R-C2p-qz-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.39180.1 /TIER=ConsEnd /STK=1 /UG=Rn.39180 /UG_TITLE=ESTs AI555810 1395113_at BE116051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116051 /DB_XREF=gi:8508156 /DB_XREF=UI-R-BS1-axy-h-08-0-UI.s1 /CLONE=UI-R-BS1-axy-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.52612.1 /TIER=ConsEnd /STK=1 /UG=Rn.52612 /UG_TITLE=ESTs BE116051 1395114_at BI294247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294247 /DB_XREF=gi:14956525 /DB_XREF=UI-R-DK0-cea-d-08-0-UI.s1 /CLONE=UI-R-DK0-cea-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.79550.1 /TIER=ConsEnd /STK=1 /UG=Rn.79550 /UG_TITLE=ESTs BI294247 1395115_at BG373926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373926 /DB_XREF=gi:13298398 /DB_XREF=UI-R-CV1-bsi-e-01-0-UI.s1 /CLONE=UI-R-CV1-bsi-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.66171.1 /TIER=ConsEnd /STK=1 /UG=Rn.66171 /UG_TITLE=ESTs BG373926 1395116_at BI286453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286453 /DB_XREF=gi:14941115 /DB_XREF=UI-R-DE0-cal-c-02-0-UI.s1 /CLONE=UI-R-DE0-cal-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.78672.1 /TIER=ConsEnd /STK=1 /UG=Rn.78672 /UG_TITLE=ESTs BI286453 CD8a molecule Cd8a 24930 NM_031538 0002456 // T cell mediated immunity // inferred from electronic annotation /// 0002456 // T cell mediated immunity // not recorded /// 0006954 // inflammatory response // non-traceable author statement /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0042110 // T cell activation // inferred from mutant phenotype /// 0045065 // cytotoxic T cell differentiation // inferred from electronic annotation /// 0045065 // cytotoxic T cell differentiation // not recorded /// 0050850 // positive regulation of calcium-mediated signaling // inferred from electronic annotation /// 0050850 // positive regulation of calcium-mediated signaling // not recorded 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1395117_at BE106475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106475 /DB_XREF=gi:8498577 /DB_XREF=UI-R-BO1-aso-d-08-0-UI.s1 /CLONE=UI-R-BO1-aso-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.69819.1 /TIER=ConsEnd /STK=1 /UG=Rn.69819 /UG_TITLE=ESTs BE106475 congenital dyserythropoietic anemia, type I /// tau tubulin kinase 2 Cdan1 /// Ttbk2 311348 /// 311349 NM_001107765 /// NM_001107766 0006468 // protein phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1395118_at AW523661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523661 /DB_XREF=gi:7166046 /DB_XREF=UI-R-BO0-aic-f-10-0-UI.s1 /CLONE=UI-R-BO0-aic-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.44997.1 /TIER=ConsEnd /STK=1 /UG=Rn.44997 /UG_TITLE=ESTs, Weakly similar to Yeast protein 00926 like (Caenorhabditis elegans) (C.elegans) AW523661 RNA (guanine-9-) methyltransferase domain containing 2 Rg9mtd2 295496 NM_001044232 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1395119_at BI290674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290674 /DB_XREF=gi:14949467 /DB_XREF=UI-R-DK0-cfy-a-09-0-UI.s1 /CLONE=UI-R-DK0-cfy-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.79179.1 /TIER=ConsEnd /STK=1 /UG=Rn.79179 /UG_TITLE=ESTs BI290674 1395120_at BF403704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403704 /DB_XREF=gi:11391679 /DB_XREF=UI-R-CA1-bix-l-22-0-UI.s1 /CLONE=UI-R-CA1-bix-l-22-0-UI /FEA=EST /CNT=2 /TID=Rn.58243.1 /TIER=ConsEnd /STK=1 /UG=Rn.58243 /UG_TITLE=ESTs BF403704 1395121_at BF394559 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394559 /DB_XREF=gi:11379425 /DB_XREF=UI-R-CA0-bfx-c-03-0-UI.s1 /CLONE=UI-R-CA0-bfx-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.61254.1 /TIER=ConsEnd /STK=1 /UG=Rn.61254 /UG_TITLE=ESTs BF394559 1395122_s_at BF291194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291194 /DB_XREF=gi:11222264 /DB_XREF=EST455785 /CLONE=RGIIJ95 /FEA=EST /CNT=2 /TID=Rn.56053.1 /TIER=ConsEnd /STK=1 /UG=Rn.56053 /UG_TITLE=ESTs, Weakly similar to galactosyltransferase-associated kinase (R.norvegicus) BF291194 cyclin-dependent kinase 10 Cdk10 361434 NM_001025722 /// NM_001109936 /// NM_001109937 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1395123_at BM389871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389871 /DB_XREF=gi:18189924 /DB_XREF=UI-R-CN1-cji-d-06-0-UI.s1 /CLONE=UI-R-CN1-cji-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.82331.1 /TIER=ConsEnd /STK=1 /UG=Rn.82331 /UG_TITLE=ESTs BM389871 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 Wfikkn1 363555 NM_001129776 0005576 // extracellular region // inferred from electronic annotation 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008191 // metalloendopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1395124_at BE101688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101688 /DB_XREF=gi:8493786 /DB_XREF=UI-R-BO1-aps-a-10-0-UI.s1 /CLONE=UI-R-BO1-aps-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.64932.1 /TIER=ConsEnd /STK=1 /UG=Rn.64932 /UG_TITLE=ESTs, Highly similar to SYW MOUSE TRYPTOPHANYL-TRNA SYNTHETASE (M.musculus) BE101688 tryptophanyl-tRNA synthetase Wars 314442 NM_001013170 0001525 // angiogenesis // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006436 // tryptophanyl-tRNA aminoacylation // inferred from electronic annotation /// 0045765 // regulation of angiogenesis // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004830 // tryptophan-tRNA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1395125_at BI301937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301937 /DB_XREF=gi:14978217 /DB_XREF=UI-R-DL0-cip-a-23-0-UI.s1 /CLONE=UI-R-DL0-cip-a-23-0-UI /FEA=EST /CNT=2 /TID=Rn.33721.1 /TIER=ConsEnd /STK=1 /UG=Rn.33721 /UG_TITLE=ESTs BI301937 Similar to hypothetical protein BC015148 RGD1309095 301381 NM_001106909 0016787 // hydrolase activity // inferred from electronic annotation 1395126_at AI011393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011393 /DB_XREF=gi:3225225 /DB_XREF=EST205844 /CLONE=ROVAU30 /FEA=EST /CNT=2 /TID=Rn.76819.1 /TIER=ConsEnd /STK=1 /UG=Rn.76819 /UG_TITLE=ESTs AI011393 Fc receptor-like S, scavenger receptor Fcrls 310694 NM_001107702 0016020 // membrane // inferred from electronic annotation 0005044 // scavenger receptor activity // inferred from electronic annotation 1395127_at AI176719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176719 /DB_XREF=gi:3727357 /DB_XREF=EST220312 /CLONE=ROVBV90 /FEA=EST /CNT=2 /TID=Rn.29022.1 /TIER=ConsEnd /STK=1 /UG=Rn.29022 /UG_TITLE=ESTs AI176719 1395128_at AA899996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899996 /DB_XREF=gi:4232487 /DB_XREF=UI-R-E0-cr-e-03-0-UI.s2 /CLONE=UI-R-E0-cr-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.32424.1 /TIER=ConsEnd /STK=1 /UG=Rn.32424 /UG_TITLE=ESTs AA899996 1395129_at BE107340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107340 /DB_XREF=gi:8499445 /DB_XREF=UI-R-BS1-ays-f-04-0-UI.s1 /CLONE=UI-R-BS1-ays-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.51160.1 /TIER=ConsEnd /STK=1 /UG=Rn.51160 /UG_TITLE=ESTs BE107340 1395130_at AA924745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924745 /DB_XREF=gi:4235936 /DB_XREF=UI-R-A1-ed-g-11-0-UI.s1 /CLONE=UI-R-A1-ed-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.34365.1 /TIER=ConsEnd /STK=1 /UG=Rn.34365 /UG_TITLE=ESTs AA924745 Zinc finger E-box binding homeobox 2 Zeb2 311071 NM_001033701 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001756 // somitogenesis // not recorded /// 0001843 // neural tube closure // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from electronic annotation /// 0007417 // central nervous system development // not recorded /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0021846 // cell proliferation in forebrain // inferred from electronic annotation /// 0021846 // cell proliferation in forebrain // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0030177 // positive regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0043507 // positive regulation of JUN kinase activity // inferred from electronic annotation /// 0043507 // positive regulation of JUN kinase activity // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048598 // embryonic morphogenesis // inferred from electronic annotation /// 0048598 // embryonic morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1395131_at BF288188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288188 /DB_XREF=gi:11219258 /DB_XREF=EST452779 /CLONE=RGIGQ63 /FEA=EST /CNT=2 /TID=Rn.43267.1 /TIER=ConsEnd /STK=1 /UG=Rn.43267 /UG_TITLE=ESTs BF288188 1395132_at BE115432 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115432 /DB_XREF=gi:8507537 /DB_XREF=UI-R-BS1-axu-f-12-0-UI.s1 /CLONE=UI-R-BS1-axu-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.52515.1 /TIER=ConsEnd /STK=1 /UG=Rn.52515 /UG_TITLE=ESTs BE115432 Utrophin Utrn 25600 NM_013070 0001954 // positive regulation of cell-matrix adhesion // not recorded /// 0001954 // positive regulation of cell-matrix adhesion // inferred from electronic annotation /// 0007528 // neuromuscular junction development // inferred from direct assay 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0016010 // dystrophin-associated glycoprotein complex // not recorded /// 0016010 // dystrophin-associated glycoprotein complex // inferred from electronic annotation /// 0030054 // cell junction // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030426 // growth cone // inferred from direct assay /// 0030864 // cortical actin cytoskeleton // inferred from direct assay /// 0031594 // neuromuscular junction // inferred from direct assay /// 0031594 // neuromuscular junction // not recorded /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0045202 // synapse // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from direct assay 1395133_at BM387572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387572 /DB_XREF=gi:18187625 /DB_XREF=UI-R-CN1-cjl-m-16-0-UI.s1 /CLONE=UI-R-CN1-cjl-m-16-0-UI /FEA=EST /CNT=2 /TID=Rn.34996.1 /TIER=ConsEnd /STK=1 /UG=Rn.34996 /UG_TITLE=ESTs BM387572 mitochondrial antiviral signaling protein Mavs 311430 NM_001005556 0002230 // positive regulation of defense response to virus by host // not recorded /// 0002230 // positive regulation of defense response to virus by host // inferred from sequence or structural similarity /// 0002230 // positive regulation of defense response to virus by host // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0032727 // positive regulation of interferon-alpha production // not recorded /// 0032727 // positive regulation of interferon-alpha production // inferred from sequence or structural similarity /// 0032727 // positive regulation of interferon-alpha production // inferred from electronic annotation /// 0032728 // positive regulation of interferon-beta production // not recorded /// 0032728 // positive regulation of interferon-beta production // inferred from sequence or structural similarity /// 0032728 // positive regulation of interferon-beta production // inferred from electronic annotation /// 0042742 // defense response to bacterium // not recorded /// 0042742 // defense response to bacterium // inferred from sequence or structural similarity /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0045087 // innate immune response // not recorded /// 0045087 // innate immune response // inferred from sequence or structural similarity /// 0045087 // innate immune response // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395134_at AI029710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029710 /DB_XREF=gi:4300434 /DB_XREF=UI-R-C0-iy-g-02-0-UI.s1 /CLONE=UI-R-C0-iy-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.44064.1 /TIER=ConsEnd /STK=1 /UG=Rn.44064 /UG_TITLE=ESTs AI029710 1395135_at AW528720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528720 /DB_XREF=gi:7171134 /DB_XREF=UI-R-BO1-ajo-e-10-0-UI.s1 /CLONE=UI-R-BO1-ajo-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.46982.1 /TIER=ConsEnd /STK=1 /UG=Rn.46982 /UG_TITLE=ESTs AW528720 Williams Beuren syndrome chromosome region 27 Wbscr27 688407 NM_001109499 0008152 // metabolic process // inferred from electronic annotation 0008168 // methyltransferase activity // inferred from electronic annotation 1395136_at BE115145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115145 /DB_XREF=gi:8507250 /DB_XREF=UI-R-BS1-axt-g-07-0-UI.s1 /CLONE=UI-R-BS1-axt-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.52464.1 /TIER=ConsEnd /STK=1 /UG=Rn.52464 /UG_TITLE=ESTs BE115145 1395137_at BE105415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105415 /DB_XREF=gi:8497517 /DB_XREF=UI-R-BO1-asn-e-05-0-UI.s1 /CLONE=UI-R-BO1-asn-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.50767.1 /TIER=ConsEnd /STK=1 /UG=Rn.50767 /UG_TITLE=ESTs BE105415 1395138_at AW534201 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534201 /DB_XREF=gi:7176615 /DB_XREF=UI-R-C4-alq-d-11-0-UI.s1 /CLONE=UI-R-C4-alq-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.48290.1 /TIER=ConsEnd /STK=1 /UG=Rn.48290 /UG_TITLE=ESTs AW534201 1395139_at BM388214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388214 /DB_XREF=gi:18188267 /DB_XREF=UI-R-DM1-cjz-a-18-0-UI.s1 /CLONE=UI-R-DM1-cjz-a-18-0-UI /FEA=EST /CNT=2 /TID=Rn.82150.1 /TIER=ConsEnd /STK=1 /UG=Rn.82150 /UG_TITLE=ESTs BM388214 kinesin family member 16B Kif16b 311478 NM_001107783 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1395140_at AW526814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526814 /DB_XREF=gi:7169228 /DB_XREF=UI-R-BO1-aje-d-03-0-UI.s1 /CLONE=UI-R-BO1-aje-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.28795.1 /TIER=ConsEnd /STK=1 /UG=Rn.28795 /UG_TITLE=ESTs AW526814 1395141_at BG376748 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376748 /DB_XREF=gi:13301220 /DB_XREF=UI-R-CU0-buv-e-04-0-UI.s1 /CLONE=UI-R-CU0-buv-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.76426.1 /TIER=ConsEnd /STK=1 /UG=Rn.76426 /UG_TITLE=ESTs BG376748 1395142_at BG371864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371864 /DB_XREF=gi:13268401 /DB_XREF=UI-R-CV0-brj-c-05-0-UI.s1 /CLONE=UI-R-CV0-brj-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.66874.1 /TIER=ConsEnd /STK=1 /UG=Rn.66874 /UG_TITLE=ESTs BG371864 1395143_at BF389774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389774 /DB_XREF=gi:11374610 /DB_XREF=UI-R-BS2-bdo-f-02-0-UI.s1 /CLONE=UI-R-BS2-bdo-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.57008.1 /TIER=ConsEnd /STK=1 /UG=Rn.57008 /UG_TITLE=ESTs BF389774 1395144_at BE116590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116590 /DB_XREF=gi:8508695 /DB_XREF=UI-R-BS1-ayd-a-04-0-UI.s1 /CLONE=UI-R-BS1-ayd-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.65048.1 /TIER=ConsEnd /STK=1 /UG=Rn.65048 /UG_TITLE=ESTs BE116590 adherens junction associated protein 1 Ajap1 687031 NM_001101014 0007155 // cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005912 // adherens junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 1395145_at BF544481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF544481 /DB_XREF=gi:11635636 /DB_XREF=UI-R-BT0-py-h-07-0-UI.r1 /CLONE=UI-R-BT0-py-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.66697.1 /TIER=ConsEnd /STK=1 /UG=Rn.66697 /UG_TITLE=ESTs BF544481 ral guanine nucleotide dissociation stimulator,-like 1 Rgl1 289080 NM_001105957 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395146_at BI290608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290608 /DB_XREF=gi:14949335 /DB_XREF=UI-R-DK0-cfx-c-03-0-UI.s1 /CLONE=UI-R-DK0-cfx-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.81251.1 /TIER=ConsEnd /STK=1 /UG=Rn.81251 /UG_TITLE=ESTs BI290608 adiponectin receptor 2 Adipor2 312670 NM_001037979 0007165 // signal transduction // not recorded /// 0007507 // heart development // inferred from expression pattern /// 0007565 // female pregnancy // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0046326 // positive regulation of glucose import // inferred from mutant phenotype 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1395147_at BE116565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116565 /DB_XREF=gi:8508670 /DB_XREF=UI-R-BS1-ayj-g-01-0-UI.s1 /CLONE=UI-R-BS1-ayj-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.52695.1 /TIER=ConsEnd /STK=1 /UG=Rn.52695 /UG_TITLE=ESTs BE116565 1395148_at BF388173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388173 /DB_XREF=gi:11372997 /DB_XREF=UI-R-CA1-bca-b-09-0-UI.s1 /CLONE=UI-R-CA1-bca-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.63540.1 /TIER=ConsEnd /STK=1 /UG=Rn.63540 /UG_TITLE=ESTs BF388173 Protein tyrosine phosphatase, receptor type, D Ptprd 313278 XM_001067936 /// XM_233065 0006470 // protein dephosphorylation // inferred from electronic annotation 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1395149_at BE115914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115914 /DB_XREF=gi:8508019 /DB_XREF=UI-R-BS1-axx-d-04-0-UI.s1 /CLONE=UI-R-BS1-axx-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.50532.1 /TIER=ConsEnd /STK=1 /UG=Rn.50532 /UG_TITLE=ESTs BE115914 Teashirt zinc finger homeobox 1 Tshz1 307217 XM_001060440 /// XM_225688 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0042474 // middle ear morphogenesis // not recorded /// 0060023 // soft palate development // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1395150_at AI502111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502111 /DB_XREF=gi:4399968 /DB_XREF=UI-R-C2p-rx-c-11-0-UI.s2 /CLONE=UI-R-C2p-rx-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.36138.1 /TIER=ConsEnd /STK=1 /UG=Rn.36138 /UG_TITLE=ESTs AI502111 Potassium voltage-gated channel, Isk-related subfamily, gene 2 Kcne2 171138 NM_133603 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0008076 // voltage-gated potassium channel complex // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from direct assay /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // traceable author statement /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0015459 // potassium channel regulator activity // inferred from direct assay 1395151_at AW527014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527014 /DB_XREF=gi:7169428 /DB_XREF=UI-R-BO1-ajg-e-10-0-UI.s1 /CLONE=UI-R-BO1-ajg-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.46395.1 /TIER=ConsEnd /STK=1 /UG=Rn.46395 /UG_TITLE=ESTs AW527014 1395152_at BI294261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294261 /DB_XREF=gi:14956553 /DB_XREF=UI-R-DK0-cea-e-10-0-UI.s1 /CLONE=UI-R-DK0-cea-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.79555.1 /TIER=ConsEnd /STK=1 /UG=Rn.79555 /UG_TITLE=ESTs, Weakly similar to BVBYK6 MAK16 protein - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BI294261 MAK16 homolog (S. cerevisiae) Mak16 306526 NM_001014002 1395153_at AW534829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534829 /DB_XREF=gi:7177243 /DB_XREF=UI-R-BS0-anw-h-03-0-UI.s1 /CLONE=UI-R-BS0-anw-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.81240.1 /TIER=ConsEnd /STK=1 /UG=Rn.81240 /UG_TITLE=ESTs AW534829 claudin 15 Cldn15 304388 NM_001107135 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 1395154_at BI288548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288548 /DB_XREF=gi:14945243 /DB_XREF=UI-R-DK0-cdg-b-11-0-UI.s1 /CLONE=UI-R-DK0-cdg-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.73269.1 /TIER=ConsEnd /STK=1 /UG=Rn.73269 /UG_TITLE=ESTs, Weakly similar to A40459 nuclear phosphoprotein SRp55 - fruit fly (D.melanogaster) BI288548 zinc finger CCCH type containing 13 Zc3h13 305955 NM_001170471 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395155_at BF386083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386083 /DB_XREF=gi:11370907 /DB_XREF=UI-R-CA0-bad-g-04-0-UI.s1 /CLONE=UI-R-CA0-bad-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.74086.1 /TIER=ConsEnd /STK=1 /UG=Rn.74086 /UG_TITLE=ESTs, Highly similar to JC6329 yeast secretory protein homolog rsec68 complex - rat (R.norvegicus) BF386083 exocyst complex component 5 Exoc5 60627 NM_022204 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0048278 // vesicle docking // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0047485 // protein N-terminus binding // not recorded 1395156_at BF567237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567237 /DB_XREF=gi:11676967 /DB_XREF=UI-R-BO0-aht-d-04-0-UI.r1 /CLONE=UI-R-BO0-aht-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.50206.1 /TIER=ConsEnd /STK=1 /UG=Rn.50206 /UG_TITLE=ESTs BF567237 1395157_at BI286685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286685 /DB_XREF=gi:14941570 /DB_XREF=UI-R-CT0s-caq-d-02-0-UI.s1 /CLONE=UI-R-CT0s-caq-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.78692.1 /TIER=ConsEnd /STK=1 /UG=Rn.78692 /UG_TITLE=ESTs, Highly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BI286685 neural precursor cell expressed, developmentally down-regulated 4 Nedd4 25489 NM_012986 0006464 // protein modification process // inferred from electronic annotation /// 0006622 // protein targeting to lysosome // not recorded /// 0006955 // immune response // inferred from expression pattern /// 0007041 // lysosomal transport // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0010766 // negative regulation of sodium ion transport // not recorded /// 0010768 // negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage // not recorded /// 0014068 // positive regulation of phosphoinositide 3-kinase cascade // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0019089 // transmission of virus // not recorded /// 0030948 // negative regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0030948 // negative regulation of vascular endothelial growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0031175 // neuron projection development // not recorded /// 0031623 // receptor internalization // not recorded /// 0032801 // receptor catabolic process // not recorded /// 0034644 // cellular response to UV // not recorded /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0042921 // glucocorticoid receptor signaling pathway // not recorded /// 0044111 // development involved in symbiotic interaction // not recorded /// 0045732 // positive regulation of protein catabolic process // not recorded /// 0046824 // positive regulation of nucleocytoplasmic transport // not recorded /// 0048814 // regulation of dendrite morphogenesis // inferred from direct assay /// 0050847 // progesterone receptor signaling pathway // not recorded /// 0070534 // protein K63-linked ubiquitination // inferred from direct assay 0000151 // ubiquitin ligase complex // not recorded /// 0000785 // chromatin // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005902 // microvillus // inferred from direct assay /// 0005938 // cell cortex // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from direct assay /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019871 // sodium channel inhibitor activity // not recorded /// 0019904 // protein domain specific binding // not recorded /// 0031698 // beta-2 adrenergic receptor binding // not recorded /// 0043130 // ubiquitin binding // not recorded /// 0050815 // phosphoserine binding // not recorded /// 0050816 // phosphothreonine binding // not recorded /// 0070063 // RNA polymerase binding // not recorded /// 0070064 // proline-rich region binding // not recorded 1395158_at BF391885 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391885 /DB_XREF=gi:11376741 /DB_XREF=UI-R-CA1-bcy-g-02-0-UI.s1 /CLONE=UI-R-CA1-bcy-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.57675.1 /TIER=ConsEnd /STK=1 /UG=Rn.57675 /UG_TITLE=ESTs BF391885 1395159_at BE121258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121258 /DB_XREF=gi:8513363 /DB_XREF=UI-R-CA0-bas-h-01-0-UI.s1 /CLONE=UI-R-CA0-bas-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.66591.1 /TIER=ConsEnd /STK=1 /UG=Rn.66591 /UG_TITLE=ESTs BE121258 KIAA1440-like LOC100365889 100365889 XM_002724782 1395160_at AW531744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531744 /DB_XREF=gi:7174158 /DB_XREF=UI-R-C4-alk-e-12-0-UI.s1 /CLONE=UI-R-C4-alk-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.46584.1 /TIER=ConsEnd /STK=1 /UG=Rn.46584 /UG_TITLE=ESTs AW531744 1395161_at AW531604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531604 /DB_XREF=gi:7174018 /DB_XREF=UI-R-BT1-aku-h-04-0-UI.s1 /CLONE=UI-R-BT1-aku-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.76207.1 /TIER=ConsEnd /STK=1 /UG=Rn.76207 /UG_TITLE=ESTs, Moderately similar to T46637 transcription factor 1, neural - rat (R.norvegicus) AW531604 myelin transcription factor 1 Myt1 362291 NM_001108615 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1395162_at BI301804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301804 /DB_XREF=gi:14978084 /DB_XREF=UI-R-DL0-cin-f-16-0-UI.s1 /CLONE=UI-R-DL0-cin-f-16-0-UI /FEA=EST /CNT=2 /TID=Rn.77114.1 /TIER=ConsEnd /STK=1 /UG=Rn.77114 /UG_TITLE=ESTs BI301804 hypothetical LOC100361136 LOC100361136 100361136 XR_085888 /// XR_086308 1395163_at BI296281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296281 /DB_XREF=gi:14960569 /DB_XREF=UI-R-DK0-cey-e-05-0-UI.s1 /CLONE=UI-R-DK0-cey-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.79803.1 /TIER=ConsEnd /STK=1 /UG=Rn.79803 /UG_TITLE=ESTs BI296281 1395164_at AI549495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549495 /DB_XREF=gi:4466983 /DB_XREF=UI-R-C3-tu-e-05-0-UI.s1 /CLONE=UI-R-C3-tu-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.42031.1 /TIER=ConsEnd /STK=1 /UG=Rn.42031 /UG_TITLE=ESTs AI549495 1395165_at BF397366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397366 /DB_XREF=gi:11382349 /DB_XREF=UI-R-BS2-bex-e-05-0-UI.s1 /CLONE=UI-R-BS2-bex-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.72910.1 /TIER=ConsEnd /STK=1 /UG=Rn.72910 /UG_TITLE=ESTs BF397366 PC4 and SFRS1 interacting protein 1 Psip1 313323 NM_175765 0006350 // transcription // inferred from electronic annotation /// 0019047 // provirus integration // not recorded /// 0019059 // initiation of viral infection // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded 0003677 // DNA binding // inferred from electronic annotation 1395166_at AW252627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252627 /DB_XREF=gi:6596218 /DB_XREF=UI-R-BJ0-add-g-05-0-UI.s1 /CLONE=UI-R-BJ0-add-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.66498.1 /TIER=ConsEnd /STK=1 /UG=Rn.66498 /UG_TITLE=ESTs AW252627 EH-domain containing 2 Ehd2 361512 NM_001024897 0006897 // endocytosis // inferred from electronic annotation /// 0006897 // endocytosis // not recorded /// 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation /// 0030866 // cortical actin cytoskeleton organization // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded 1395167_at BG672109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672109 /DB_XREF=gi:13894208 /DB_XREF=DRNCCB03 /CLONE=DRNCCB03 /FEA=EST /CNT=2 /TID=Rn.50488.1 /TIER=ConsEnd /STK=1 /UG=Rn.50488 /UG_TITLE=ESTs BG672109 1395168_at AI045103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045103 /DB_XREF=gi:3291922 /DB_XREF=UI-R-C1-kg-a-05-0-UI.s1 /CLONE=UI-R-C1-kg-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.43351.1 /TIER=ConsEnd /STK=1 /UG=Rn.43351 /UG_TITLE=ESTs AI045103 1395169_at BF388779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388779 /DB_XREF=gi:11373603 /DB_XREF=UI-R-BS2-bde-d-12-0-UI.s1 /CLONE=UI-R-BS2-bde-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.72882.1 /TIER=ConsEnd /STK=1 /UG=Rn.72882 /UG_TITLE=ESTs BF388779 zinc finger, CCHC domain containing 8 Zcchc8 288661 NM_001105929 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395170_at AI169247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169247 /DB_XREF=gi:3705555 /DB_XREF=EST215082 /CLONE=RKIBP27 /FEA=EST /CNT=2 /TID=Rn.28011.1 /TIER=ConsEnd /STK=1 /UG=Rn.28011 /UG_TITLE=ESTs AI169247 1395171_at BI291135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291135 /DB_XREF=gi:14950386 /DB_XREF=UI-R-DK0-cgh-a-01-0-UI.s1 /CLONE=UI-R-DK0-cgh-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.79230.1 /TIER=ConsEnd /STK=1 /UG=Rn.79230 /UG_TITLE=ESTs BI291135 1395172_at BE096402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096402 /DB_XREF=gi:8487333 /DB_XREF=UI-R-BU0-apf-f-09-0-UI.s1 /CLONE=UI-R-BU0-apf-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.48978.1 /TIER=ConsEnd /STK=1 /UG=Rn.48978 /UG_TITLE=ESTs BE096402 1395173_at BF396243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396243 /DB_XREF=gi:11381215 /DB_XREF=UI-R-BS2-bdv-h-10-0-UI.s1 /CLONE=UI-R-BS2-bdv-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.72935.1 /TIER=ConsEnd /STK=1 /UG=Rn.72935 /UG_TITLE=ESTs, Highly similar to S58008 GPI-anchored protein - mouse (M.musculus) BF396243 cell cycle associated protein 1 Caprin1 362173 NM_001012185 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // not recorded 1395174_at BI289214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289214 /DB_XREF=gi:14946558 /DB_XREF=UI-R-DK0-cfj-c-01-0-UI.s1 /CLONE=UI-R-DK0-cfj-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.79010.1 /TIER=ConsEnd /STK=1 /UG=Rn.79010 /UG_TITLE=ESTs BI289214 1395175_at BF410035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410035 /DB_XREF=gi:11398010 /DB_XREF=UI-R-CA0-bjs-g-06-0-UI.s1 /CLONE=UI-R-CA0-bjs-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.61557.1 /TIER=ConsEnd /STK=1 /UG=Rn.61557 /UG_TITLE=ESTs BF410035 1395176_at BF404785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404785 /DB_XREF=gi:11392760 /DB_XREF=UI-R-CA1-bid-f-02-0-UI.s1 /CLONE=UI-R-CA1-bid-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.63561.1 /TIER=ConsEnd /STK=1 /UG=Rn.63561 /UG_TITLE=ESTs BF404785 1395177_at AW532473 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532473 /DB_XREF=gi:7174887 /DB_XREF=UI-R-BS0-ami-a-12-0-UI.s1 /CLONE=UI-R-BS0-ami-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.47962.1 /TIER=ConsEnd /STK=1 /UG=Rn.47962 /UG_TITLE=ESTs AW532473 1395178_at AI556682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556682 /DB_XREF=gi:4489045 /DB_XREF=UI-R-C2p-rj-c-05-0-UI.s1 /CLONE=UI-R-C2p-rj-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.39203.1 /TIER=ConsEnd /STK=1 /UG=Rn.39203 /UG_TITLE=ESTs AI556682 1395179_at BG375582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375582 /DB_XREF=gi:13300054 /DB_XREF=UI-R-CS0-btd-a-02-0-UI.s1 /CLONE=UI-R-CS0-btd-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.51723.1 /TIER=ConsEnd /STK=1 /UG=Rn.51723 /UG_TITLE=ESTs BG375582 1395180_s_at AW535140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535140 /DB_XREF=gi:7177554 /DB_XREF=UI-R-C4-als-f-09-0-UI.s1 /CLONE=UI-R-C4-als-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.64108.1 /TIER=ConsEnd /STK=1 /UG=Rn.64108 /UG_TITLE=ESTs AW535140 1395181_at AI407570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407570 /DB_XREF=gi:4251074 /DB_XREF=EST235860 /CLONE=ROVDZ70 /FEA=EST /CNT=2 /TID=Rn.43597.1 /TIER=ConsEnd /STK=1 /UG=Rn.43597 /UG_TITLE=ESTs AI407570 1395182_at AI411008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411008 /DB_XREF=gi:4254512 /DB_XREF=EST239302 /CLONE=RKIEE47 /FEA=EST /CNT=2 /TID=Rn.44191.1 /TIER=ConsEnd /STK=1 /UG=Rn.44191 /UG_TITLE=ESTs AI411008 kelch-like 20 (Drosophila) Klhl20 304920 NM_001107192 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from sequence or structural similarity /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016605 // PML body // not recorded /// 0016605 // PML body // inferred from sequence or structural similarity /// 0031463 // Cul3-RING ubiquitin ligase complex // not recorded /// 0031463 // Cul3-RING ubiquitin ligase complex // inferred from sequence or structural similarity /// 0044444 // cytoplasmic part // not recorded /// 0044444 // cytoplasmic part // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019964 // interferon-gamma binding // not recorded /// 0019964 // interferon-gamma binding // inferred from sequence or structural similarity 1395183_at BM391096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391096 /DB_XREF=gi:18191149 /DB_XREF=UI-R-CN1-cjr-h-08-0-UI.s1 /CLONE=UI-R-CN1-cjr-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.73529.1 /TIER=ConsEnd /STK=1 /UG=Rn.73529 /UG_TITLE=ESTs BM391096 1395184_at AI411699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411699 /DB_XREF=gi:4255203 /DB_XREF=EST239993 /CLONE=ROVEM17 /FEA=EST /CNT=2 /TID=Rn.43461.1 /TIER=ConsEnd /STK=1 /UG=Rn.43461 /UG_TITLE=ESTs AI411699 C-type lectin domain family 12, member A Clec12a 680338 NM_001134716 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1395185_at BE115336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115336 /DB_XREF=gi:8507441 /DB_XREF=UI-R-BJ1-avr-b-02-0-UI.s1 /CLONE=UI-R-BJ1-avr-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.52500.1 /TIER=ConsEnd /STK=1 /UG=Rn.52500 /UG_TITLE=ESTs BE115336 1395186_at BE119146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119146 /DB_XREF=gi:8511251 /DB_XREF=UI-R-CA0-azz-a-09-0-UI.s1 /CLONE=UI-R-CA0-azz-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.69580.1 /TIER=ConsEnd /STK=1 /UG=Rn.69580 /UG_TITLE=ESTs BE119146 1395187_at AW531976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531976 /DB_XREF=gi:7174390 /DB_XREF=UI-R-C4-alh-f-02-0-UI.s1 /CLONE=UI-R-C4-alh-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.47860.1 /TIER=ConsEnd /STK=1 /UG=Rn.47860 /UG_TITLE=ESTs AW531976 1395188_at BF393262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393262 /DB_XREF=gi:11378122 /DB_XREF=UI-R-CA0-bfs-g-04-0-UI.s1 /CLONE=UI-R-CA0-bfs-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.66834.1 /TIER=ConsEnd /STK=1 /UG=Rn.66834 /UG_TITLE=ESTs BF393262 1395189_at BE111371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111371 /DB_XREF=gi:8503476 /DB_XREF=UI-R-BJ1-auy-a-06-0-UI.s1 /CLONE=UI-R-BJ1-auy-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.51988.1 /TIER=ConsEnd /STK=1 /UG=Rn.51988 /UG_TITLE=ESTs BE111371 1395190_at AI408099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408099 /DB_XREF=gi:4251603 /DB_XREF=EST236389 /CLONE=ROVEF75 /FEA=EST /CNT=2 /TID=Rn.55844.1 /TIER=ConsEnd /STK=1 /UG=Rn.55844 /UG_TITLE=ESTs, Weakly similar to ALDOSE REDUCTASE (R.norvegicus) AI408099 aldo-keto reductase family 1, member B10 (aldose reductase) Akr1b10 296972 NM_001013084 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1395191_at BF401203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401203 /DB_XREF=gi:11389178 /DB_XREF=UI-R-CA0-bgj-g-10-0-UI.s1 /CLONE=UI-R-CA0-bgj-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.54226.1 /TIER=ConsEnd /STK=1 /UG=Rn.54226 /UG_TITLE=ESTs BF401203 1395192_at BF392026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392026 /DB_XREF=gi:11376883 /DB_XREF=UI-R-CA0-bfg-d-03-0-UI.s1 /CLONE=UI-R-CA0-bfg-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.57720.1 /TIER=ConsEnd /STK=1 /UG=Rn.57720 /UG_TITLE=ESTs, Highly similar to ORC3_MOUSE ORIGIN RECOGNITION COMPLEX SUBUNIT 3 (ORIGIN RECOGNITION COMPLEX SUBUNIT LATHEO) (M.musculus) BF392026 origin recognition complex, subunit 3-like (yeast) Orc3l 313138 NM_001025282 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded 0000808 // origin recognition complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005664 // nuclear origin of replication recognition complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395193_at BM384656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384656 /DB_XREF=gi:18184709 /DB_XREF=UI-R-DY0-ckl-h-17-0-UI.s1 /CLONE=UI-R-DY0-ckl-h-17-0-UI /FEA=EST /CNT=2 /TID=Rn.81457.1 /TIER=ConsEnd /STK=1 /UG=Rn.81457 /UG_TITLE=ESTs, Highly similar to T46308 hypothetical protein DKFZp434F0411.1 (H.sapiens) BM384656 1395194_at BF413525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413525 /DB_XREF=gi:11401514 /DB_XREF=UI-R-CA0-bof-c-07-0-UI.s1 /CLONE=UI-R-CA0-bof-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.62375.1 /TIER=ConsEnd /STK=1 /UG=Rn.62375 /UG_TITLE=ESTs BF413525 1395195_at AI502884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502884 /DB_XREF=gi:4400735 /DB_XREF=UI-R-C2p-om-b-01-0-UI.s1 /CLONE=UI-R-C2p-om-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.34581.1 /TIER=ConsEnd /STK=1 /UG=Rn.34581 /UG_TITLE=ESTs AI502884 1395196_at AI548778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548778 /DB_XREF=gi:4466266 /DB_XREF=UI-R-C3-tr-e-07-0-UI.s1 /CLONE=UI-R-C3-tr-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.42024.1 /TIER=ConsEnd /STK=1 /UG=Rn.42024 /UG_TITLE=ESTs AI548778 1395197_at BI293027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293027 /DB_XREF=gi:14954127 /DB_XREF=UI-R-DK0-cdj-d-01-0-UI.s1 /CLONE=UI-R-DK0-cdj-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.49287.1 /TIER=ConsEnd /STK=1 /UG=Rn.49287 /UG_TITLE=ESTs BI293027 1395198_at BE099956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099956 /DB_XREF=gi:8491840 /DB_XREF=UI-R-BJ1-atr-a-12-0-UI.s1 /CLONE=UI-R-BJ1-atr-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.49925.1 /TIER=ConsEnd /STK=1 /UG=Rn.49925 /UG_TITLE=ESTs, Weakly similar to I49642 estrogen-responsive finger protein - mouse (M.musculus) BE099956 Ring finger protein 114 Rnf114 362277 NM_001001517 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395199_at AA998946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998946 /DB_XREF=gi:4292962 /DB_XREF=UI-R-C0-ig-a-10-0-UI.s1 /CLONE=UI-R-C0-ig-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.33160.1 /TIER=ConsEnd /STK=1 /UG=Rn.33160 /UG_TITLE=ESTs, Highly similar to IF31_HUMAN EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 1 (H.sapiens) AA998946 eukaryotic translation initiation factor 3, subunit J Eif3j 691947 NM_001077670 0006412 // translation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from sequence or structural similarity /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395200_at AI549281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549281 /DB_XREF=gi:4466769 /DB_XREF=UI-R-C3-tx-g-07-0-UI.s1 /CLONE=UI-R-C3-tx-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.34274.1 /TIER=ConsEnd /STK=1 /UG=Rn.34274 /UG_TITLE=ESTs AI549281 1395201_at BE114807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114807 /DB_XREF=gi:8506912 /DB_XREF=UI-R-BJ1-awp-e-10-0-UI.s1 /CLONE=UI-R-BJ1-awp-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.52432.1 /TIER=ConsEnd /STK=1 /UG=Rn.52432 /UG_TITLE=ESTs, Moderately similar to A54305 KRAG protein - mouse (M.musculus) BE114807 sarcospan Sspn 500364 NM_001109255 0016021 // integral to membrane // inferred from electronic annotation /// 0030133 // transport vesicle // not recorded /// 0042383 // sarcolemma // not recorded 1395202_at BE106256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106256 /DB_XREF=gi:8498358 /DB_XREF=UI-R-BO1-asl-g-12-0-UI.s1 /CLONE=UI-R-BO1-asl-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.61871.1 /TIER=ConsEnd /STK=1 /UG=Rn.61871 /UG_TITLE=ESTs BE106256 1395203_at BI290823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290823 /DB_XREF=gi:14949764 /DB_XREF=UI-R-DK0-cga-g-11-0-UI.s1 /CLONE=UI-R-DK0-cga-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.79192.1 /TIER=ConsEnd /STK=1 /UG=Rn.79192 /UG_TITLE=ESTs BI290823 1395204_at BM390675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390675 /DB_XREF=gi:18190728 /DB_XREF=UI-R-CN1-cjr-k-22-0-UI.s1 /CLONE=UI-R-CN1-cjr-k-22-0-UI /FEA=EST /CNT=2 /TID=Rn.82509.1 /TIER=ConsEnd /STK=1 /UG=Rn.82509 /UG_TITLE=ESTs BM390675 1395205_at AW526364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526364 /DB_XREF=gi:7168749 /DB_XREF=UI-R-BO1-ajb-c-08-0-UI.s1 /CLONE=UI-R-BO1-ajb-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.62850.1 /TIER=ConsEnd /STK=1 /UG=Rn.62850 /UG_TITLE=ESTs AW526364 1395206_at AW528854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528854 /DB_XREF=gi:7171268 /DB_XREF=UI-R-BT1-akj-d-05-0-UI.s1 /CLONE=UI-R-BT1-akj-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.47031.1 /TIER=ConsEnd /STK=1 /UG=Rn.47031 /UG_TITLE=ESTs AW528854 1395207_at AW527787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527787 /DB_XREF=gi:7170166 /DB_XREF=UI-R-BT1-ajy-g-06-0-UI.s1 /CLONE=UI-R-BT1-ajy-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.76145.1 /TIER=ConsEnd /STK=1 /UG=Rn.76145 /UG_TITLE=ESTs AW527787 1395208_at AW526049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526049 /DB_XREF=gi:7168434 /DB_XREF=UI-R-BO1-aiy-f-09-0-UI.s1 /CLONE=UI-R-BO1-aiy-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.46071.1 /TIER=ConsEnd /STK=1 /UG=Rn.46071 /UG_TITLE=ESTs AW526049 1395209_at BM387740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387740 /DB_XREF=gi:18187793 /DB_XREF=UI-R-CN1-cjj-p-12-0-UI.s1 /CLONE=UI-R-CN1-cjj-p-12-0-UI /FEA=EST /CNT=2 /TID=Rn.82068.1 /TIER=ConsEnd /STK=1 /UG=Rn.82068 /UG_TITLE=ESTs BM387740 1395210_at BE118557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118557 /DB_XREF=gi:8510662 /DB_XREF=UI-R-BJ1-azq-b-06-0-UI.s1 /CLONE=UI-R-BJ1-azq-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.53005.1 /TIER=ConsEnd /STK=1 /UG=Rn.53005 /UG_TITLE=ESTs BE118557 0003779 // actin binding // inferred from electronic annotation 1395211_s_at BE118557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118557 /DB_XREF=gi:8510662 /DB_XREF=UI-R-BJ1-azq-b-06-0-UI.s1 /CLONE=UI-R-BJ1-azq-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.53005.1 /TIER=ConsEnd /STK=1 /UG=Rn.53005 /UG_TITLE=ESTs BE118557 0003779 // actin binding // inferred from electronic annotation 1395212_at BE105805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105805 /DB_XREF=gi:8497907 /DB_XREF=UI-R-BX0-ary-c-08-0-UI.s1 /CLONE=UI-R-BX0-ary-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.50826.1 /TIER=ConsEnd /STK=1 /UG=Rn.50826 /UG_TITLE=ESTs BE105805 1395213_at BI289885 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289885 /DB_XREF=gi:14947921 /DB_XREF=UI-R-DK0-cfp-d-09-0-UI.s1 /CLONE=UI-R-DK0-cfp-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.62930.1 /TIER=ConsEnd /STK=1 /UG=Rn.62930 /UG_TITLE=ESTs BI289885 1395214_at BM391078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391078 /DB_XREF=gi:18191131 /DB_XREF=UI-R-CN1-cjr-d-10-0-UI.s1 /CLONE=UI-R-CN1-cjr-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.82599.1 /TIER=ConsEnd /STK=1 /UG=Rn.82599 /UG_TITLE=ESTs BM391078 RGD1562012 RGD1562012 497962 NM_001173471 /// XM_001080895 /// XM_579762 1395215_at BF404567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404567 /DB_XREF=gi:11392507 /DB_XREF=UI-R-CA1-big-e-09-0-UI.s1 /CLONE=UI-R-CA1-big-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.60538.1 /TIER=ConsEnd /STK=1 /UG=Rn.60538 /UG_TITLE=ESTs BF404567 1395216_at AI176768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176768 /DB_XREF=gi:3727406 /DB_XREF=EST220363 /CLONE=ROVBW57 /FEA=EST /CNT=2 /TID=Rn.29027.1 /TIER=ConsEnd /STK=1 /UG=Rn.29027 /UG_TITLE=ESTs AI176768 1395217_at AA899394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899394 /DB_XREF=gi:4231891 /DB_XREF=UI-R-E0-cs-d-02-0-UI.s2 /CLONE=UI-R-E0-cs-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.32387.1 /TIER=ConsEnd /STK=1 /UG=Rn.32387 /UG_TITLE=ESTs AA899394 1395218_at BF387979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387979 /DB_XREF=gi:11372803 /DB_XREF=UI-R-CA1-bbw-h-09-0-UI.s1 /CLONE=UI-R-CA1-bbw-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.62977.1 /TIER=ConsEnd /STK=1 /UG=Rn.62977 /UG_TITLE=ESTs BF387979 1395219_at BE096754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096754 /DB_XREF=gi:8487685 /DB_XREF=UI-R-BU0-apm-d-08-0-UI.s1 /CLONE=UI-R-BU0-apm-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.63713.1 /TIER=ConsEnd /STK=1 /UG=Rn.63713 /UG_TITLE=ESTs BE096754 1395220_at AI556467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556467 /DB_XREF=gi:4488830 /DB_XREF=UI-R-C2p-rk-a-07-0-UI.s1 /CLONE=UI-R-C2p-rk-a-07-0-UI /FEA=EST /CNT=2 /TID=Rn.63724.1 /TIER=ConsEnd /STK=1 /UG=Rn.63724 /UG_TITLE=ESTs AI556467 1395221_at AA892908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892908 /DB_XREF=gi:4132230 /DB_XREF=EST196711 /CLONE=RKIAY79 /FEA=EST /CNT=2 /TID=Rn.30138.1 /TIER=ConsEnd /STK=1 /UG=Rn.30138 /UG_TITLE=ESTs, Highly similar to SNXD_HUMAN SORTING NEXIN 13 (H.sapiens) AA892908 sorting nexin 13 Snx13 362731 NM_001108708 0007154 // cell communication // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1395222_at BF287049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287049 /DB_XREF=gi:11218119 /DB_XREF=EST451640 /CLONE=RGIFY38 /FEA=EST /CNT=2 /TID=Rn.33770.1 /TIER=ConsEnd /STK=1 /UG=Rn.33770 /UG_TITLE=ESTs BF287049 1395223_at AI709940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709940 /DB_XREF=gi:4999716 /DB_XREF=UI-R-AD1-zr-f-06-0-UI.s1 /CLONE=UI-R-AD1-zr-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.41577.1 /TIER=ConsEnd /STK=1 /UG=Rn.41577 /UG_TITLE=ESTs AI709940 kelch domain containing 8B /// kelch domain-containing protein 8B-like Klhdc8b /// LOC100364166 100364166 /// 306589 NM_001007685 /// XR_085905 0005737 // cytoplasm // inferred from electronic annotation 1395224_at AI102342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102342 /DB_XREF=gi:3707135 /DB_XREF=EST211631 /CLONE=RBRCC34 /FEA=EST /CNT=2 /TID=Rn.55329.1 /TIER=ConsEnd /STK=1 /UG=Rn.55329 /UG_TITLE=ESTs AI102342 Rho GTPase activating protein 21 Arhgap21 307178 NM_001191693 /// XM_001074395 /// XM_225628 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395225_at AI409427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409427 /DB_XREF=gi:4252931 /DB_XREF=EST237719 /CLONE=RKIDV92 /FEA=EST /CNT=2 /TID=Rn.56048.1 /TIER=ConsEnd /STK=1 /UG=Rn.56048 /UG_TITLE=ESTs, Weakly similar to T19942 hypothetical protein C44H4.4 - Caenorhabditis elegans (C.elegans) AI409427 similar to hypothetical protein FLJ20302; similar to CG31653-PA RGD1307264 309637 XM_002725844 /// XM_002728921 1395226_at BI274777 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274777 /DB_XREF=gi:14886014 /DB_XREF=UI-R-CX0-bxd-h-09-0-UI.s1 /CLONE=UI-R-CX0-bxd-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.26804.1 /TIER=ConsEnd /STK=1 /UG=Rn.26804 /UG_TITLE=ESTs BI274777 aftiphilin Aftph 305544 XM_001055784 /// XM_223651 0005829 // cytosol // not recorded /// 0030121 // AP-1 adaptor complex // not recorded 0030276 // clathrin binding // not recorded 1395227_at BF386208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386208 /DB_XREF=gi:11371032 /DB_XREF=UI-R-CA1-bbb-h-05-0-UI.s1 /CLONE=UI-R-CA1-bbb-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.56210.1 /TIER=ConsEnd /STK=1 /UG=Rn.56210 /UG_TITLE=ESTs BF386208 1395228_at AI044273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044273 /DB_XREF=gi:3291176 /DB_XREF=UI-R-C1-kb-d-04-0-UI.s2 /CLONE=UI-R-C1-kb-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.17133.1 /TIER=ConsEnd /STK=1 /UG=Rn.17133 /UG_TITLE=ESTs AI044273 1395229_at BG375118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375118 /DB_XREF=gi:13299590 /DB_XREF=UI-R-CV1-bsx-c-11-0-UI.s1 /CLONE=UI-R-CV1-bsx-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.66288.1 /TIER=ConsEnd /STK=1 /UG=Rn.66288 /UG_TITLE=ESTs BG375118 Rho guanine nucleotide exchange factor (GEF) 12 Arhgef12 367072 NM_001013246 0006915 // apoptosis // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0001664 // G-protein-coupled receptor binding // inferred from electronic annotation /// 0001664 // G-protein-coupled receptor binding // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395230_at AI112506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112506 /DB_XREF=gi:3512455 /DB_XREF=UI-R-Y0-mg-d-08-0-UI.s1 /CLONE=UI-R-Y0-mg-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.26795.1 /TIER=ConsEnd /STK=1 /UG=Rn.26795 /UG_TITLE=ESTs AI112506 1395231_at BI293502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293502 /DB_XREF=gi:14955058 /DB_XREF=UI-R-DK0-cdr-c-02-0-UI.s1 /CLONE=UI-R-DK0-cdr-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.32426.1 /TIER=ConsEnd /STK=1 /UG=Rn.32426 /UG_TITLE=ESTs BI293502 cell division cycle associated 4 Cdca4 500727 NM_001037214 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // not recorded 1395232_at AI011035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011035 /DB_XREF=gi:3224867 /DB_XREF=EST205486 /CLONE=RMUAW68 /FEA=EST /CNT=2 /TID=Rn.48096.1 /TIER=ConsEnd /STK=1 /UG=Rn.48096 /UG_TITLE=ESTs AI011035 DDB1 and CUL4 associated factor 6 Dcaf6 289181 XM_001071288 /// XM_002724885 /// XM_002728021 /// XM_213926 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0080008 // CUL4 RING ubiquitin ligase complex // not recorded 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded 1395233_at BE107671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107671 /DB_XREF=gi:8499776 /DB_XREF=UI-R-BT1-ame-e-04-0-UI.s1 /CLONE=UI-R-BT1-ame-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.76239.1 /TIER=ConsEnd /STK=1 /UG=Rn.76239 /UG_TITLE=ESTs BE107671 1395234_at AI178199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178199 /DB_XREF=gi:3728837 /DB_XREF=EST221864 /CLONE=RPLCN43 /FEA=EST /CNT=2 /TID=Rn.55477.1 /TIER=ConsEnd /STK=1 /UG=Rn.55477 /UG_TITLE=ESTs AI178199 1395235_at BE108041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108041 /DB_XREF=gi:8500146 /DB_XREF=UI-R-CA0-awz-g-01-0-UI.s1 /CLONE=UI-R-CA0-awz-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.48965.1 /TIER=ConsEnd /STK=1 /UG=Rn.48965 /UG_TITLE=ESTs, Weakly similar to T29947 hypothetical protein T20D4.7 - Caenorhabditis elegans (C.elegans) BE108041 nucleoredoxin-like 1 Nxnl1 306342 NM_001107302 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1395236_at AW530361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530361 /DB_XREF=gi:7172816 /DB_XREF=UI-R-BU0-amw-d-03-0-UI.s1 /CLONE=UI-R-BU0-amw-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.47439.1 /TIER=ConsEnd /STK=1 /UG=Rn.47439 /UG_TITLE=ESTs AW530361 protein phosphatase 1, regulatory (inhibitor) subunit 3C Ppp1r3c 309513 NM_001012072 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // not recorded /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005978 // glycogen biosynthetic process // not recorded /// 0005978 // glycogen biosynthetic process // inferred from electronic annotation /// 0005979 // regulation of glycogen biosynthetic process // inferred from direct assay /// 0005981 // regulation of glycogen catabolic process // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0042587 // glycogen granule // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from mutant phenotype 1395237_at BE117773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117773 /DB_XREF=gi:8509878 /DB_XREF=UI-R-BS1-azf-g-09-0-UI.s1 /CLONE=UI-R-BS1-azf-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.50811.1 /TIER=ConsEnd /STK=1 /UG=Rn.50811 /UG_TITLE=ESTs, Moderately similar to T43483 translation initiation factor IF-2 homolog (H.sapiens) BE117773 eukaryotic translation initiation factor 5B Eif5b 308306 NM_001110141 0006412 // translation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // non-traceable author statement /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation 1395238_at AI237240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237240 /DB_XREF=gi:3830746 /DB_XREF=EST233802 /CLONE=RPLCV33 /FEA=EST /CNT=2 /TID=Rn.55493.1 /TIER=ConsEnd /STK=1 /UG=Rn.55493 /UG_TITLE=ESTs AI237240 1395239_at BI302053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302053 /DB_XREF=gi:14978333 /DB_XREF=UI-R-DM0-ciq-n-14-0-UI.s1 /CLONE=UI-R-DM0-ciq-n-14-0-UI /FEA=EST /CNT=2 /TID=Rn.77242.1 /TIER=ConsEnd /STK=1 /UG=Rn.77242 /UG_TITLE=ESTs BI302053 1395240_at BG665321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665321 /DB_XREF=gi:13887243 /DB_XREF=DRACBC11 /CLONE=DRACBC11 /FEA=EST /CNT=2 /TID=Rn.68998.1 /TIER=ConsEnd /STK=1 /UG=Rn.68998 /UG_TITLE=ESTs BG665321 1395241_at BF389686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389686 /DB_XREF=gi:11374521 /DB_XREF=UI-R-BS2-bdn-e-11-0-UI.s1 /CLONE=UI-R-BS2-bdn-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.70186.1 /TIER=ConsEnd /STK=1 /UG=Rn.70186 /UG_TITLE=ESTs BF389686 1395242_at BF419005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419005 /DB_XREF=gi:11406994 /DB_XREF=UI-R-BJ2-bqm-d-11-0-UI.s1 /CLONE=UI-R-BJ2-bqm-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.27441.1 /TIER=ConsEnd /STK=1 /UG=Rn.27441 /UG_TITLE=ESTs BF419005 1395243_at AA848970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848970 /DB_XREF=gi:2936510 /DB_XREF=EST191732 /CLONE=RLUAI53 /FEA=EST /CNT=2 /TID=Rn.55928.1 /TIER=ConsEnd /STK=1 /UG=Rn.55928 /UG_TITLE=ESTs AA848970 1395244_at BF386418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386418 /DB_XREF=gi:11371242 /DB_XREF=UI-R-CA1-bbd-c-07-0-UI.s1 /CLONE=UI-R-CA1-bbd-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.72547.1 /TIER=ConsEnd /STK=1 /UG=Rn.72547 /UG_TITLE=ESTs BF386418 1395245_at AI578413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578413 /DB_XREF=gi:4562789 /DB_XREF=UI-R-C3-su-h-03-0-UI.s2 /CLONE=UI-R-C3-su-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.39235.1 /TIER=ConsEnd /STK=1 /UG=Rn.39235 /UG_TITLE=ESTs AI578413 1395246_at AI104783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104783 /DB_XREF=gi:3709061 /DB_XREF=EST214072 /CLONE=RHECJ08 /FEA=EST /CNT=2 /TID=Rn.55288.1 /TIER=ConsEnd /STK=1 /UG=Rn.55288 /UG_TITLE=ESTs AI104783 1395247_at BI291400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291400 /DB_XREF=gi:14950909 /DB_XREF=UI-R-CV2-cgp-f-11-0-UI.s1 /CLONE=UI-R-CV2-cgp-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.79248.1 /TIER=ConsEnd /STK=1 /UG=Rn.79248 /UG_TITLE=ESTs BI291400 1395248_at BF418342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418342 /DB_XREF=gi:11406331 /DB_XREF=UI-R-CA0-bme-a-01-0-UI.s1 /CLONE=UI-R-CA0-bme-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.27521.1 /TIER=ConsEnd /STK=1 /UG=Rn.27521 /UG_TITLE=ESTs BF418342 ER degradation enhancer, mannosidase alpha-like 1 Edem1 297504 XM_001075943 /// XM_238366 0030433 // ER-associated protein catabolic process // not recorded 0016020 // membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded 0004559 // alpha-mannosidase activity // not recorded /// 0004571 // mannosyl-oligosaccharide 1,2-alpha-mannosidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051787 // misfolded protein binding // not recorded 1395249_at BF400750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400750 /DB_XREF=gi:11388725 /DB_XREF=UI-R-CA0-bhf-b-04-0-UI.s1 /CLONE=UI-R-CA0-bhf-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.59634.1 /TIER=ConsEnd /STK=1 /UG=Rn.59634 /UG_TITLE=ESTs BF400750 small nucleolar RNA host gene 11 Snhg11 362256 XM_001068561 /// XM_347038 1395250_at BM383984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383984 /DB_XREF=gi:18184037 /DB_XREF=UI-R-DM1-ckc-o-13-0-UI.s1 /CLONE=UI-R-DM1-ckc-o-13-0-UI /FEA=EST /CNT=2 /TID=Rn.79140.1 /TIER=ConsEnd /STK=1 /UG=Rn.79140 /UG_TITLE=ESTs BM383984 F-box protein 42 Fbxo42 362646 NM_001108691 0005515 // protein binding // inferred from electronic annotation 1395251_at BM384713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384713 /DB_XREF=gi:18184766 /DB_XREF=UI-R-CN1-cjl-d-15-0-UI.s2 /CLONE=UI-R-CN1-cjl-d-15-0-UI /FEA=EST /CNT=2 /TID=Rn.81461.1 /TIER=ConsEnd /STK=1 /UG=Rn.81461 /UG_TITLE=ESTs BM384713 1395252_at BE101587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101587 /DB_XREF=gi:8493685 /DB_XREF=UI-R-BO1-apr-g-04-0-UI.s1 /CLONE=UI-R-BO1-apr-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.59670.1 /TIER=ConsEnd /STK=1 /UG=Rn.59670 /UG_TITLE=ESTs BE101587 1395253_at BE107893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107893 /DB_XREF=gi:8499998 /DB_XREF=UI-R-CA0-awy-a-08-0-UI.s1 /CLONE=UI-R-CA0-awy-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.61122.1 /TIER=ConsEnd /STK=1 /UG=Rn.61122 /UG_TITLE=ESTs BE107893 family with sequence similarity 65, member A Fam65a 291974 XM_001075785 /// XM_214666 0005488 // binding // inferred from electronic annotation 1395254_at BF388342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388342 /DB_XREF=gi:11373161 /DB_XREF=UI-R-CA1-bcz-b-12-0-UI.s1 /CLONE=UI-R-CA1-bcz-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.56730.1 /TIER=ConsEnd /STK=1 /UG=Rn.56730 /UG_TITLE=ESTs BF388342 1395255_at AW526964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526964 /DB_XREF=gi:7169378 /DB_XREF=UI-R-BO1-ajg-a-06-0-UI.s1 /CLONE=UI-R-BO1-ajg-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.67845.1 /TIER=ConsEnd /STK=1 /UG=Rn.67845 /UG_TITLE=ESTs AW526964 1395256_at BI301996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301996 /DB_XREF=gi:14978271 /DB_XREF=UI-R-DL0-cip-m-11-0-UI.s1 /CLONE=UI-R-DL0-cip-m-11-0-UI /FEA=EST /CNT=2 /TID=Rn.77232.1 /TIER=ConsEnd /STK=1 /UG=Rn.77232 /UG_TITLE=ESTs BI301996 1395257_at BI288688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288688 /DB_XREF=gi:14945518 /DB_XREF=UI-R-DK0-cdd-g-07-0-UI.s1 /CLONE=UI-R-DK0-cdd-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.69236.1 /TIER=ConsEnd /STK=1 /UG=Rn.69236 /UG_TITLE=ESTs BI288688 1395258_at BI295317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295317 /DB_XREF=gi:14958645 /DB_XREF=UI-R-DK0-cep-g-07-0-UI.s1 /CLONE=UI-R-DK0-cep-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.79690.1 /TIER=ConsEnd /STK=1 /UG=Rn.79690 /UG_TITLE=ESTs BI295317 1395259_at BI295572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295572 /DB_XREF=gi:14959154 /DB_XREF=UI-R-DK0-cev-h-12-0-UI.s1 /CLONE=UI-R-DK0-cev-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.79719.1 /TIER=ConsEnd /STK=1 /UG=Rn.79719 /UG_TITLE=ESTs BI295572 Hypothetical protein LOC685316 LOC685316 685316 XM_001063299 1395260_at BM383147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383147 /DB_XREF=gi:18183200 /DB_XREF=UI-R-DS0-cje-j-04-0-UI.s1 /CLONE=UI-R-DS0-cje-j-04-0-UI /FEA=EST /CNT=2 /TID=Rn.63666.1 /TIER=ConsEnd /STK=1 /UG=Rn.63666 /UG_TITLE=ESTs BM383147 1395261_at BE097054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097054 /DB_XREF=gi:8487985 /DB_XREF=UI-R-BO1-apw-e-06-0-UI.s1 /CLONE=UI-R-BO1-apw-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.58452.1 /TIER=ConsEnd /STK=1 /UG=Rn.58452 /UG_TITLE=ESTs BE097054 small nuclear ribonucleoprotein 70 (U1) Snrnp70 361574 NM_001108483 0000398 // nuclear mRNA splicing, via spliceosome // not recorded /// 0000398 // nuclear mRNA splicing, via spliceosome // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0043484 // regulation of RNA splicing // not recorded /// 0043484 // regulation of RNA splicing // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1395262_at BF402135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402135 /DB_XREF=gi:11390074 /DB_XREF=UI-R-CA1-bim-h-11-0-UI.s1 /CLONE=UI-R-CA1-bim-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.61771.1 /TIER=ConsEnd /STK=1 /UG=Rn.61771 /UG_TITLE=ESTs BF402135 1395263_at AW529355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529355 /DB_XREF=gi:7171769 /DB_XREF=UI-R-BT1-akf-a-08-0-UI.s1 /CLONE=UI-R-BT1-akf-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.47174.1 /TIER=ConsEnd /STK=1 /UG=Rn.47174 /UG_TITLE=ESTs AW529355 1395264_at BF543757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543757 /DB_XREF=gi:11634864 /DB_XREF=UI-R-C3-tb-d-04-0-UI.r1 /CLONE=UI-R-C3-tb-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.73446.1 /TIER=ConsEnd /STK=1 /UG=Rn.73446 /UG_TITLE=ESTs BF543757 RAP1 interacting factor homolog (yeast) Rif1 295602 XM_001065608 /// XM_215736 0019827 // stem cell maintenance // not recorded 0000781 // chromosome, telomeric region // not recorded /// 0001939 // female pronucleus // not recorded /// 0001940 // male pronucleus // not recorded /// 0005634 // nucleus // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395265_at BF419323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419323 /DB_XREF=gi:11407312 /DB_XREF=UI-R-BJ2-bqq-c-05-0-UI.s1 /CLONE=UI-R-BJ2-bqq-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.65431.1 /TIER=ConsEnd /STK=1 /UG=Rn.65431 /UG_TITLE=ESTs BF419323 Glucosamine (N-acetyl)-6-sulfatase Gns 299825 NM_001011989 0008152 // metabolic process // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // inferred from electronic annotation /// 0042340 // keratan sulfate catabolic process // inferred from direct assay 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005539 // glycosaminoglycan binding // inferred from physical interaction /// 0008449 // N-acetylglucosamine-6-sulfatase activity // inferred from direct assay /// 0008449 // N-acetylglucosamine-6-sulfatase activity // inferred from electronic annotation /// 0008484 // sulfuric ester hydrolase activity // not recorded /// 0008484 // sulfuric ester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0043199 // sulfate binding // inferred from physical interaction 1395266_at AI578611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578611 /DB_XREF=gi:4562987 /DB_XREF=UI-R-AA0-wo-d-02-0-UI.s1 /CLONE=UI-R-AA0-wo-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.67135.1 /TIER=ConsEnd /STK=1 /UG=Rn.67135 /UG_TITLE=ESTs AI578611 1395267_at BM391972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391972 /DB_XREF=gi:18192025 /DB_XREF=UI-R-DO1-cmk-a-10-0-UI.s1 /CLONE=UI-R-DO1-cmk-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.82664.1 /TIER=ConsEnd /STK=1 /UG=Rn.82664 /UG_TITLE=ESTs BM391972 1395268_at BM383223 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383223 /DB_XREF=gi:18183276 /DB_XREF=UI-R-DS0-cjd-n-05-0-UI.s1 /CLONE=UI-R-DS0-cjd-n-05-0-UI /FEA=EST /CNT=2 /TID=Rn.81239.1 /TIER=ConsEnd /STK=1 /UG=Rn.81239 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BM383223 WW domain containing E3 ubiquitin protein ligase 1 Wwp1 297930 NM_001024757 0006464 // protein modification process // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded 0005622 // intracellular // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1395269_s_at AI228492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228492 /DB_XREF=gi:3812379 /DB_XREF=EST225187 /CLONE=RBRCV61 /FEA=EST /CNT=2 /TID=Rn.37105.1 /TIER=ConsEnd /STK=1 /UG=Rn.37105 /UG_TITLE=ESTs, Highly similar to GAD RAT GAMMA-AMINOBUTYRIC-ACID RECEPTOR DELTA SUBUNIT PRECURSOR (R.norvegicus) AI228492 gamma-aminobutyric acid (GABA) A receptor, delta Gabrd 29689 NM_017289 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004890 // GABA-A receptor activity // inferred from direct assay /// 0004890 // GABA-A receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation 1395270_x_at AI228492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228492 /DB_XREF=gi:3812379 /DB_XREF=EST225187 /CLONE=RBRCV61 /FEA=EST /CNT=2 /TID=Rn.37105.1 /TIER=ConsEnd /STK=1 /UG=Rn.37105 /UG_TITLE=ESTs, Highly similar to GAD RAT GAMMA-AMINOBUTYRIC-ACID RECEPTOR DELTA SUBUNIT PRECURSOR (R.norvegicus) AI228492 gamma-aminobutyric acid (GABA) A receptor, delta Gabrd 29689 NM_017289 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004890 // GABA-A receptor activity // inferred from direct assay /// 0004890 // GABA-A receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation 1395271_at BF563111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563111 /DB_XREF=gi:11672841 /DB_XREF=UI-R-BO1-aiz-a-07-0-UI.r1 /CLONE=UI-R-BO1-aiz-a-07-0-UI /FEA=EST /CNT=2 /TID=Rn.46083.1 /TIER=ConsEnd /STK=1 /UG=Rn.46083 /UG_TITLE=ESTs BF563111 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1395272_at BF394456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394456 /DB_XREF=gi:11379322 /DB_XREF=UI-R-CA0-bfw-a-09-0-UI.s1 /CLONE=UI-R-CA0-bfw-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.62578.1 /TIER=ConsEnd /STK=1 /UG=Rn.62578 /UG_TITLE=ESTs BF394456 1395273_at BE115782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115782 /DB_XREF=gi:8507887 /DB_XREF=UI-R-CA0-axs-g-10-0-UI.s1 /CLONE=UI-R-CA0-axs-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.52584.1 /TIER=ConsEnd /STK=1 /UG=Rn.52584 /UG_TITLE=ESTs, Weakly similar to A Chain A, Crystal Structure Of S-Adenosylhomocysteine Hydrolase (Adohcyase) Complexed With A Potent Inhibitor D-Eritadenine (R.norvegicus) BE115782 adenosylhomocysteinase-like 1 Ahcyl1 362013 NM_001108561 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004013 // adenosylhomocysteinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1395274_at AI235468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235468 /DB_XREF=gi:3828974 /DB_XREF=EST232030 /CLONE=ROVCS17 /FEA=EST /CNT=2 /TID=Rn.60705.1 /TIER=ConsEnd /STK=1 /UG=Rn.60705 /UG_TITLE=ESTs, Moderately similar to T00079 hypothetical protein KIAA0465 (H.sapiens) AI235468 0007050 // cell cycle arrest // inferred from electronic annotation 0005856 // cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1395275_at BM390168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390168 /DB_XREF=gi:18190221 /DB_XREF=UI-R-CN1-cjp-n-12-0-UI.s1 /CLONE=UI-R-CN1-cjp-n-12-0-UI /FEA=EST /CNT=2 /TID=Rn.82397.1 /TIER=ConsEnd /STK=1 /UG=Rn.82397 /UG_TITLE=ESTs BM390168 1395276_at AA899483 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899483 /DB_XREF=gi:4231981 /DB_XREF=UI-R-E0-de-c-04-0-UI.s1 /CLONE=UI-R-E0-de-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.40244.1 /TIER=ConsEnd /STK=1 /UG=Rn.40244 /UG_TITLE=ESTs AA899483 Ring finger protein 7 Rnf7 300948 NM_001106848 0006916 // anti-apoptosis // not recorded /// 0006919 // activation of caspase activity // not recorded /// 0008631 // induction of apoptosis by oxidative stress // not recorded /// 0008637 // apoptotic mitochondrial changes // not recorded /// 0045116 // protein neddylation // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019788 // NEDD8 ligase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1395277_at BF396535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396535 /DB_XREF=gi:11381509 /DB_XREF=UI-R-BS2-bdz-c-04-0-UI.s1 /CLONE=UI-R-BS2-bdz-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.58621.1 /TIER=ConsEnd /STK=1 /UG=Rn.58621 /UG_TITLE=ESTs BF396535 1395278_at BI299865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299865 /DB_XREF=gi:14976145 /DB_XREF=UI-R-CV2-chy-b-06-0-UI.s1 /CLONE=UI-R-CV2-chy-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.72992.1 /TIER=ConsEnd /STK=1 /UG=Rn.72992 /UG_TITLE=ESTs BI299865 1395279_at BI297004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297004 /DB_XREF=gi:14961986 /DB_XREF=UI-R-DK0-cgk-b-03-0-UI.s1 /CLONE=UI-R-DK0-cgk-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.79860.1 /TIER=ConsEnd /STK=1 /UG=Rn.79860 /UG_TITLE=ESTs BI297004 PX domain containing serine/threonine kinase Pxk 306203 NM_182821 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0007154 // cell communication // inferred from electronic annotation /// 0032780 // negative regulation of ATPase activity // inferred from electronic annotation /// 0032780 // negative regulation of ATPase activity // not recorded /// 0043271 // negative regulation of ion transport // inferred from electronic annotation /// 0043271 // negative regulation of ion transport // not recorded /// 0050804 // regulation of synaptic transmission // not recorded /// 0050804 // regulation of synaptic transmission // inferred from sequence or structural similarity /// 0050804 // regulation of synaptic transmission // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1395280_at AA899303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899303 /DB_XREF=gi:4231801 /DB_XREF=UI-R-E0-cz-a-05-0-UI.s1 /CLONE=UI-R-E0-cz-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.32379.1 /TIER=ConsEnd /STK=1 /UG=Rn.32379 /UG_TITLE=ESTs AA899303 1395281_at BE108512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108512 /DB_XREF=gi:8500617 /DB_XREF=UI-R-CA0-axf-b-05-0-UI.s1 /CLONE=UI-R-CA0-axf-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.51503.1 /TIER=ConsEnd /STK=1 /UG=Rn.51503 /UG_TITLE=ESTs BE108512 1395282_at BF391342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391342 /DB_XREF=gi:11376194 /DB_XREF=UI-R-CA1-bcr-c-06-0-UI.s1 /CLONE=UI-R-CA1-bcr-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.57475.1 /TIER=ConsEnd /STK=1 /UG=Rn.57475 /UG_TITLE=ESTs, Highly similar to splicing factor U2AF homolog (M.musculus) BF391342 similar to U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform b /// U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 LOC690372 /// U2af2 308335 /// 690372 XM_001060115 /// XM_218195 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0070742 // C2H2 zinc finger domain binding // inferred from electronic annotation 1395283_at BF411821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411821 /DB_XREF=gi:11399810 /DB_XREF=UI-R-BT1-bmw-f-08-0-UI.s1 /CLONE=UI-R-BT1-bmw-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.61936.1 /TIER=ConsEnd /STK=1 /UG=Rn.61936 /UG_TITLE=ESTs BF411821 1395284_at BF397576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397576 /DB_XREF=gi:11382560 /DB_XREF=UI-R-BS2-bfa-b-11-0-UI.s1 /CLONE=UI-R-BS2-bfa-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.63783.1 /TIER=ConsEnd /STK=1 /UG=Rn.63783 /UG_TITLE=ESTs BF397576 1395285_at BE108376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108376 /DB_XREF=gi:8500481 /DB_XREF=UI-R-BS1-ayv-e-11-0-UI.s1 /CLONE=UI-R-BS1-ayv-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.82622.1 /TIER=ConsEnd /STK=1 /UG=Rn.82622 /UG_TITLE=ESTs BE108376 hypothetical LOC100361684 /// RIKEN cDNA 4732471D19-like LOC100361684 /// LOC100365086 100361684 /// 100365086 XM_002725224 /// XR_086059 1395286_at BF398465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398465 /DB_XREF=gi:11383456 /DB_XREF=UI-R-BS2-bep-b-06-0-UI.s1 /CLONE=UI-R-BS2-bep-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.45956.1 /TIER=ConsEnd /STK=1 /UG=Rn.45956 /UG_TITLE=ESTs BF398465 1395287_at BE119914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119914 /DB_XREF=gi:8512019 /DB_XREF=UI-R-CA0-baj-d-12-0-UI.s1 /CLONE=UI-R-CA0-baj-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.48826.1 /TIER=ConsEnd /STK=1 /UG=Rn.48826 /UG_TITLE=ESTs BE119914 1395288_at AI233739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233739 /DB_XREF=gi:3817619 /DB_XREF=EST230427 /CLONE=RKIDJ49 /FEA=EST /CNT=2 /TID=Rn.55241.1 /TIER=ConsEnd /STK=1 /UG=Rn.55241 /UG_TITLE=ESTs AI233739 1395289_at H33428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33428 /DB_XREF=gi:978845 /DB_XREF=EST109420 /CLONE=RPNAR48 /FEA=EST /CNT=2 /TID=Rn.61419.1 /TIER=ConsEnd /STK=1 /UG=Rn.61419 /UG_TITLE=ESTs H33428 vacuolar protein sorting 26 homolog B (S. pombe) Vps26b 300472 NM_001106809 0007034 // vacuolar transport // inferred from electronic annotation 0030904 // retromer complex // inferred from electronic annotation 1395290_at BF393591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393591 /DB_XREF=gi:11378453 /DB_XREF=UI-R-CA0-bgd-f-08-0-UI.s1 /CLONE=UI-R-CA0-bgd-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.61424.1 /TIER=ConsEnd /STK=1 /UG=Rn.61424 /UG_TITLE=ESTs BF393591 1395291_at BF396777 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396777 /DB_XREF=gi:11381758 /DB_XREF=UI-R-BS2-bev-a-06-0-UI.s1 /CLONE=UI-R-BS2-bev-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.65291.1 /TIER=ConsEnd /STK=1 /UG=Rn.65291 /UG_TITLE=ESTs BF396777 1395292_at BF405869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405869 /DB_XREF=gi:11393844 /DB_XREF=UI-R-CA1-bii-a-01-0-UI.s1 /CLONE=UI-R-CA1-bii-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.72650.1 /TIER=ConsEnd /STK=1 /UG=Rn.72650 /UG_TITLE=ESTs BF405869 fibronectin type III domain containing 5 Fndc5 260327 XM_001060505 /// XM_002729542 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1395293_at BF388802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388802 /DB_XREF=gi:11373626 /DB_XREF=UI-R-BS2-bde-g-01-0-UI.s1 /CLONE=UI-R-BS2-bde-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.28555.1 /TIER=ConsEnd /STK=1 /UG=Rn.28555 /UG_TITLE=ESTs, Weakly similar to GL6S_HUMAN N-ACETYLGLUCOSAMINE-6-SULFATASE PRECURSOR (H.sapiens) BF388802 Sulfatase 2 Sulf2 311642 NM_001034927 0008152 // metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004065 // arylsulfatase activity // not recorded /// 0004065 // arylsulfatase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008484 // sulfuric ester hydrolase activity // inferred from electronic annotation 1395294_at BE106134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106134 /DB_XREF=gi:8498236 /DB_XREF=UI-R-BX0-ase-d-04-0-UI.s1 /CLONE=UI-R-BX0-ase-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.32473.1 /TIER=ConsEnd /STK=1 /UG=Rn.32473 /UG_TITLE=ESTs BE106134 1395295_at AI112116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112116 /DB_XREF=gi:3512065 /DB_XREF=UI-R-Y0-mo-h-01-0-UI.s1 /CLONE=UI-R-Y0-mo-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.82037.1 /TIER=ConsEnd /STK=1 /UG=Rn.82037 /UG_TITLE=ESTs, Moderately similar to T43468 hypothetical protein DKFZp434K0227.1 (H.sapiens) AI112116 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 Mllt6 303504 XM_001081378 /// XM_239329 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1395296_at AI709505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709505 /DB_XREF=gi:4999281 /DB_XREF=UI-R-C3-tn-a-12-0-UI.s1 /CLONE=UI-R-C3-tn-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.41257.1 /TIER=ConsEnd /STK=1 /UG=Rn.41257 /UG_TITLE=ESTs AI709505 1395297_at AI556097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556097 /DB_XREF=gi:4488460 /DB_XREF=UI-R-C2p-rf-b-02-0-UI.s1 /CLONE=UI-R-C2p-rf-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.39202.1 /TIER=ConsEnd /STK=1 /UG=Rn.39202 /UG_TITLE=ESTs AI556097 similar to hypothetical protein FLJ10652 RGD1309621 316982 XM_001075984 /// XM_229579 1395298_at AI070708 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070708 /DB_XREF=gi:3396959 /DB_XREF=UI-R-C2-mx-g-04-0-UI.s1 /CLONE=UI-R-C2-mx-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.72649.1 /TIER=ConsEnd /STK=1 /UG=Rn.72649 /UG_TITLE=ESTs, Moderately similar to I49257 NF2d9 - mouse (M.musculus) AI070708 upstream binding protein 1 (LBP-1a) Ubp1 301038 NM_001191819 /// XM_001076644 /// XM_002727141 /// XM_002729971 /// XM_238562 0001525 // angiogenesis // not recorded 1395299_at BF415218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415218 /DB_XREF=gi:11403207 /DB_XREF=UI-R-BJ2-boz-c-12-0-UI.s1 /CLONE=UI-R-BJ2-boz-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.61799.1 /TIER=ConsEnd /STK=1 /UG=Rn.61799 /UG_TITLE=ESTs BF415218 Keratin 24 Krt24 287675 NM_001004131 0045103 // intermediate filament-based process // traceable author statement 0005882 // intermediate filament // traceable author statement /// 0005882 // intermediate filament // inferred from electronic annotation /// 0045095 // keratin filament // traceable author statement 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // traceable author statement 1395300_at AI548714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548714 /DB_XREF=gi:4466202 /DB_XREF=UI-R-C3-tw-e-02-0-UI.s1 /CLONE=UI-R-C3-tw-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.29301.1 /TIER=ConsEnd /STK=1 /UG=Rn.29301 /UG_TITLE=ESTs AI548714 1395301_x_at AI555307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555307 /DB_XREF=gi:4487670 /DB_XREF=UI-R-C2p-qq-f-05-0-UI.s1 /CLONE=UI-R-C2p-qq-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.42586.1 /TIER=ConsEnd /STK=1 /UG=Rn.42586 /UG_TITLE=ESTs AI555307 similar to paired immunoglobin-like type 2 receptor beta /// similar to paired immunoglobin-like type 2 receptor beta LOC685157 /// LOC686862 685157 /// 686862 NM_001115044 /// XM_002724797 1395302_at BE104435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104435 /DB_XREF=gi:8496575 /DB_XREF=UI-R-BX0-asa-g-11-0-UI.s1 /CLONE=UI-R-BX0-asa-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.50639.1 /TIER=ConsEnd /STK=1 /UG=Rn.50639 /UG_TITLE=ESTs BE104435 1395303_at BF397734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397734 /DB_XREF=gi:11382718 /DB_XREF=UI-R-BS2-bee-a-03-0-UI.s1 /CLONE=UI-R-BS2-bee-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.58889.1 /TIER=ConsEnd /STK=1 /UG=Rn.58889 /UG_TITLE=ESTs BF397734 Retinoic acid induced 12 Rai12 287446 NM_001001718 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395304_at AW535090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535090 /DB_XREF=gi:7177504 /DB_XREF=UI-R-C4-als-b-02-0-UI.s1 /CLONE=UI-R-C4-als-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.48420.1 /TIER=ConsEnd /STK=1 /UG=Rn.48420 /UG_TITLE=ESTs AW535090 1395305_at AW535218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535218 /DB_XREF=gi:7177677 /DB_XREF=UI-R-C4-alv-b-05-0-UI.s1 /CLONE=UI-R-C4-alv-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.32520.1 /TIER=ConsEnd /STK=1 /UG=Rn.32520 /UG_TITLE=ESTs AW535218 1395306_at AI502736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502736 /DB_XREF=gi:4400587 /DB_XREF=UI-R-C1-lg-d-12-0-UI.s1 /CLONE=UI-R-C1-lg-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.35478.1 /TIER=ConsEnd /STK=1 /UG=Rn.35478 /UG_TITLE=ESTs AI502736 polybromo 1 Pbrm1 306254 XM_001059164 /// XM_240329 0001890 // placenta development // not recorded /// 0007507 // heart development // not recorded 0000776 // kinetochore // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0005515 // protein binding // not recorded 1395307_at AI409823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409823 /DB_XREF=gi:4253327 /DB_XREF=EST238116 /CLONE=RPLDO13 /FEA=EST /CNT=2 /TID=Rn.37909.1 /TIER=ConsEnd /STK=1 /UG=Rn.37909 /UG_TITLE=ESTs AI409823 1395308_at BE097976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097976 /DB_XREF=gi:8488955 /DB_XREF=UI-R-C4-amc-h-08-0-UI.s1 /CLONE=UI-R-C4-amc-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.72881.1 /TIER=ConsEnd /STK=1 /UG=Rn.72881 /UG_TITLE=ESTs BE097976 transmembrane protein 127 Tmem127 311405 NM_001100978 0016021 // integral to membrane // inferred from electronic annotation 1395309_at AI764313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764313 /DB_XREF=gi:5210248 /DB_XREF=UI-R-Y0-acx-d-07-0-UI.s1 /CLONE=UI-R-Y0-acx-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.48977.1 /TIER=ConsEnd /STK=1 /UG=Rn.48977 /UG_TITLE=ESTs AI764313 1395310_at AW534041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534041 /DB_XREF=gi:7176455 /DB_XREF=UI-R-C4-alm-d-07-0-UI.s1 /CLONE=UI-R-C4-alm-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.72462.1 /TIER=ConsEnd /STK=1 /UG=Rn.72462 /UG_TITLE=ESTs, Weakly similar to ANKYRIN (M.musculus) AW534041 ankyrin repeat and SOCS box-containing 1 Asb1 316628 NM_001108232 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030539 // male genitalia development // inferred from electronic annotation /// 0030539 // male genitalia development // not recorded 1395311_at BI293227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293227 /DB_XREF=gi:14954528 /DB_XREF=UI-R-DK0-cdm-c-09-0-UI.s1 /CLONE=UI-R-DK0-cdm-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.79400.1 /TIER=ConsEnd /STK=1 /UG=Rn.79400 /UG_TITLE=ESTs BI293227 isoprenylcysteine carboxyl methyltransferase Icmt 170818 NM_133310 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001889 // liver development // inferred from electronic annotation /// 0001889 // liver development // not recorded /// 0006479 // protein methylation // not recorded /// 0006479 // protein methylation // inferred from electronic annotation /// 0006481 // C-terminal protein methylation // inferred from mutant phenotype /// 0006481 // C-terminal protein methylation // not recorded /// 0006481 // C-terminal protein methylation // inferred from electronic annotation /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0035264 // multicellular organism growth // inferred from electronic annotation /// 0035264 // multicellular organism growth // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0046498 // S-adenosylhomocysteine metabolic process // inferred from mutant phenotype /// 0046499 // S-adenosylmethioninamine metabolic process // inferred from mutant phenotype /// 0046578 // regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046578 // regulation of Ras protein signal transduction // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004671 // protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity // inferred from mutant phenotype /// 0004671 // protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity // not recorded /// 0004671 // protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity // inferred from electronic annotation /// 0008140 // cAMP response element binding protein binding // inferred from electronic annotation /// 0008140 // cAMP response element binding protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1395312_at BE121118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121118 /DB_XREF=gi:8513223 /DB_XREF=UI-R-CA0-bau-c-05-0-UI.s1 /CLONE=UI-R-CA0-bau-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.62147.1 /TIER=ConsEnd /STK=1 /UG=Rn.62147 /UG_TITLE=ESTs BE121118 1395313_s_at AI179982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179982 /DB_XREF=gi:3730620 /DB_XREF=EST223713 /CLONE=RSPCO47 /FEA=EST /CNT=2 /TID=Rn.49291.1 /TIER=ConsEnd /STK=1 /UG=Rn.49291 /UG_TITLE=ESTs AI179982 Annexin A3 Anxa3 25291 NM_012823 0006909 // phagocytosis // inferred from electronic annotation /// 0006909 // phagocytosis // not recorded /// 0010595 // positive regulation of endothelial cell migration // inferred from electronic annotation /// 0010595 // positive regulation of endothelial cell migration // not recorded /// 0021766 // hippocampus development // inferred from expression pattern /// 0031100 // organ regeneration // inferred from expression pattern /// 0042742 // defense response to bacterium // inferred from electronic annotation /// 0042742 // defense response to bacterium // not recorded /// 0043312 // neutrophil degranulation // inferred from electronic annotation /// 0043312 // neutrophil degranulation // not recorded /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0051054 // positive regulation of DNA metabolic process // inferred from mutant phenotype /// 0051091 // positive regulation of transcription factor activity // inferred from electronic annotation /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0070848 // response to growth factor stimulus // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030670 // phagocytic vesicle membrane // inferred from electronic annotation /// 0030670 // phagocytic vesicle membrane // not recorded /// 0042581 // specific granule // inferred from electronic annotation /// 0042581 // specific granule // not recorded /// 0043025 // neuronal cell body // inferred from direct assay 0004859 // phospholipase inhibitor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // inferred from direct assay /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid binding // not recorded /// 0019834 // phospholipase A2 inhibitor activity // inferred from direct assay /// 0019834 // phospholipase A2 inhibitor activity // inferred from electronic annotation 1395314_at AA924452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924452 /DB_XREF=gi:4234591 /DB_XREF=UI-R-A1-dx-e-04-0-UI.s1 /CLONE=UI-R-A1-dx-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.52856.1 /TIER=ConsEnd /STK=1 /UG=Rn.52856 /UG_TITLE=ESTs AA924452 1395315_at BF395708 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395708 /DB_XREF=gi:11380679 /DB_XREF=UI-R-CM0-bjh-c-08-0-UI.s1 /CLONE=UI-R-CM0-bjh-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.65279.1 /TIER=ConsEnd /STK=1 /UG=Rn.65279 /UG_TITLE=ESTs BF395708 1395316_at H32543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H32543 /DB_XREF=gi:977960 /DB_XREF=EST107752 /FEA=EST /CNT=2 /TID=Rn.56595.1 /TIER=ConsEnd /STK=1 /UG=Rn.56595 /UG_TITLE=ESTs H32543 melanoma antigen, family H, 1 Mageh1 367767 NM_001013250 0048011 // nerve growth factor receptor signaling pathway // non-traceable author statement 0005737 // cytoplasm // inferred from direct assay 1395317_at BF409510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409510 /DB_XREF=gi:11397485 /DB_XREF=UI-R-CA1-bll-a-10-0-UI.s1 /CLONE=UI-R-CA1-bll-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.61382.1 /TIER=ConsEnd /STK=1 /UG=Rn.61382 /UG_TITLE=ESTs BF409510 1395318_at BF397354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397354 /DB_XREF=gi:11382337 /DB_XREF=UI-R-BS2-bex-d-04-0-UI.s1 /CLONE=UI-R-BS2-bex-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.58805.1 /TIER=ConsEnd /STK=1 /UG=Rn.58805 /UG_TITLE=ESTs BF397354 similar to chromodomain helicase DNA binding protein 9 LOC680231 680231 XM_002725383 /// XM_002725384 /// XM_002728588 0006333 // chromatin assembly or disassembly // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1395319_at BM383557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383557 /DB_XREF=gi:18183610 /DB_XREF=UI-R-DM1-cka-f-19-0-UI.s1 /CLONE=UI-R-DM1-cka-f-19-0-UI /FEA=EST /CNT=2 /TID=Rn.81336.1 /TIER=ConsEnd /STK=1 /UG=Rn.81336 /UG_TITLE=ESTs BM383557 1395320_s_at BI289049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289049 /DB_XREF=gi:14946221 /DB_XREF=UI-R-DK0-cdh-h-10-0-UI.s1 /CLONE=UI-R-DK0-cdh-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.78985.1 /TIER=ConsEnd /STK=1 /UG=Rn.78985 /UG_TITLE=ESTs, Moderately similar to JC6540 placenta specific-homeobox protein - mouse (M.musculus) BI289049 reproductive homeobox 9 Rhox9 298352 NM_001024874 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1395321_at AW533648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533648 /DB_XREF=gi:7176062 /DB_XREF=UI-R-BU0-anj-d-08-0-UI.s1 /CLONE=UI-R-BU0-anj-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.48157.1 /TIER=ConsEnd /STK=1 /UG=Rn.48157 /UG_TITLE=ESTs AW533648 Testis expressed 2 Tex2 303611 XM_001069235 /// XM_001081602 /// XM_001081606 /// XM_002727825 0016020 // membrane // inferred from electronic annotation 1395322_at BE116752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116752 /DB_XREF=gi:8508857 /DB_XREF=UI-R-BS1-aye-h-04-0-UI.s1 /CLONE=UI-R-BS1-aye-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.52724.1 /TIER=ConsEnd /STK=1 /UG=Rn.52724 /UG_TITLE=ESTs BE116752 Stem-loop binding protein Slbp 681062 NM_001130988 0033260 // DNA replication involved in S phase // not recorded /// 0033261 // regulation of S phase // not recorded /// 0051028 // mRNA transport // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // not recorded 0003729 // mRNA binding // not recorded /// 0005515 // protein binding // not recorded 1395323_x_at BF398458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398458 /DB_XREF=gi:11383448 /DB_XREF=UI-R-BS2-bep-a-11-0-UI.s1 /CLONE=UI-R-BS2-bep-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.64586.1 /TIER=ConsEnd /STK=1 /UG=Rn.64586 /UG_TITLE=ESTs, Weakly similar to S16783 probable RNA-directed DNA polymerase (R.norvegicus) BF398458 1395324_at BM385905 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385905 /DB_XREF=gi:18185958 /DB_XREF=UI-R-DM1-cke-p-02-0-UI.s1 /CLONE=UI-R-DM1-cke-p-02-0-UI /FEA=EST /CNT=2 /TID=Rn.81674.1 /TIER=ConsEnd /STK=1 /UG=Rn.81674 /UG_TITLE=ESTs BM385905 1395325_s_at BF564628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564628 /DB_XREF=gi:11674358 /DB_XREF=UI-R-BT1-amh-e-12-0-UI.r1 /CLONE=UI-R-BT1-amh-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.64172.1 /TIER=ConsEnd /STK=1 /UG=Rn.64172 /UG_TITLE=ESTs BF564628 membrane magnesium transporter 1 Mmgt1 302864 NM_001106970 0006810 // transport // inferred from electronic annotation /// 0006824 // cobalt ion transport // not recorded /// 0006824 // cobalt ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // inferred from electronic annotation /// 0006825 // copper ion transport // not recorded /// 0015674 // di-, tri-valent inorganic cation transport // not recorded /// 0015674 // di-, tri-valent inorganic cation transport // inferred from electronic annotation /// 0015684 // ferrous iron transport // not recorded /// 0015684 // ferrous iron transport // inferred from electronic annotation /// 0015693 // magnesium ion transport // not recorded /// 0015693 // magnesium ion transport // inferred from sequence or structural similarity /// 0015693 // magnesium ion transport // inferred from electronic annotation /// 0034220 // ion transmembrane transport // not recorded /// 0034755 // iron ion transmembrane transport // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from sequence or structural similarity /// 0005769 // early endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation 0015082 // di-, tri-valent inorganic cation transmembrane transporter activity // not recorded /// 0015082 // di-, tri-valent inorganic cation transmembrane transporter activity // inferred from electronic annotation /// 0015087 // cobalt ion transmembrane transporter activity // inferred from electronic annotation /// 0015087 // cobalt ion transmembrane transporter activity // not recorded /// 0015093 // ferrous iron transmembrane transporter activity // inferred from electronic annotation /// 0015093 // ferrous iron transmembrane transporter activity // not recorded /// 0015095 // magnesium ion transmembrane transporter activity // not recorded /// 0015095 // magnesium ion transmembrane transporter activity // inferred from sequence or structural similarity /// 0015095 // magnesium ion transmembrane transporter activity // inferred from electronic annotation 1395326_at AI548193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548193 /DB_XREF=gi:4465681 /DB_XREF=UI-R-C3-su-e-03-0-UI.s1 /CLONE=UI-R-C3-su-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.72644.1 /TIER=ConsEnd /STK=1 /UG=Rn.72644 /UG_TITLE=ESTs, Weakly similar to A2BP_MOUSE ATAXIN 2-BINDING PROTEIN (M.musculus) AI548193 RNA binding motif protein 9 Rbm9 362950 NM_001079895 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0030520 // estrogen receptor signaling pathway // inferred from sequence or structural similarity /// 0030520 // estrogen receptor signaling pathway // inferred from electronic annotation 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from sequence or structural similarity /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from sequence or structural similarity /// 0008134 // transcription factor binding // inferred from electronic annotation 1395327_at AW522341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522341 /DB_XREF=gi:7164726 /DB_XREF=UI-R-BO0-ahe-g-07-0-UI.s1 /CLONE=UI-R-BO0-ahe-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.45365.1 /TIER=ConsEnd /STK=1 /UG=Rn.45365 /UG_TITLE=ESTs AW522341 1395328_at AI102954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102954 /DB_XREF=gi:4134130 /DB_XREF=EST212243 /CLONE=REMBV40 /FEA=EST /CNT=19 /TID=Rn.8649.1 /TIER=ConsEnd /STK=0 /UG=Rn.8649 /UG_TITLE=ESTs AI102954 non-SMC element 4 homolog A (S. cerevisiae) Nsmce4a 293528 NM_001106301 1395329_at AW141715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141715 /DB_XREF=gi:6161538 /DB_XREF=EST291794 /CLONE=RGICE14 /FEA=EST /CNT=18 /TID=Rn.24815.2 /TIER=ConsEnd /STK=0 /UG=Rn.24815 /UG_TITLE=ESTs, Weakly similar to guanyltransferase (Caenorhabditis elegans) (C.elegans) AW141715 GDP-mannose pyrophosphorylase B Gmppb 363145 NM_001108781 0009058 // biosynthetic process // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0016740 // transferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1395330_at BF283126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283126 /DB_XREF=gi:11214196 /DB_XREF=EST447717 /CLONE=RGIDX86 /FEA=EST /CNT=16 /TID=Rn.56091.1 /TIER=ConsEnd /STK=0 /UG=Rn.56091 /UG_TITLE=ESTs BF283126 1395331_at BF548263 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548263 /DB_XREF=gi:11639370 /DB_XREF=UI-R-A0-ap-a-08-0-UI.r1 /CLONE=UI-R-A0-ap-a-08-0-UI /FEA=EST /CNT=16 /TID=Rn.7338.1 /TIER=ConsEnd /STK=0 /UG=Rn.7338 /UG_TITLE=ESTs, Weakly similar to OS9_HUMAN PROTEIN OS-9 PRECURSOR (H.sapiens) BF548263 endoplasmic reticulum lectin 1 Erlec1 289874 NM_001106023 0030433 // ER-associated protein catabolic process // not recorded 0005788 // endoplasmic reticulum lumen // not recorded 0001948 // glycoprotein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395332_at AW917757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917757 /DB_XREF=gi:8083516 /DB_XREF=EST349061 /CLONE=RGIEH60 /FEA=EST /CNT=14 /TID=Rn.34788.1 /TIER=ConsEnd /STK=0 /UG=Rn.34788 /UG_TITLE=ESTs, Highly similar to TBX2 PROTEIN (M.musculus) AW917757 T-box 2 Tbx2 303398 NM_001107033 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007521 // muscle cell fate determination // not recorded /// 0007569 // cell aging // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0048738 // cardiac muscle tissue development // not recorded /// 0060596 // mammary placode formation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // not recorded 1395333_at AW533483 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533483 /DB_XREF=gi:7175897 /DB_XREF=UI-R-BU0-ani-d-10-0-UI.s1 /CLONE=UI-R-BU0-ani-d-10-0-UI /FEA=EST /CNT=13 /TID=Rn.68131.1 /TIER=ConsEnd /STK=0 /UG=Rn.68131 /UG_TITLE=ESTs, Weakly similar to FABA RAT FATTY ACID-BINDING PROTEIN, ADIPOCYTE (R.norvegicus) AW533483 peripheral myelin protein 2 Pmp2 688790 NM_001109514 0006810 // transport // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation 1395334_at BE112276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112276 /DB_XREF=gi:8504381 /DB_XREF=UI-R-BJ1-avl-g-06-0-UI.s1 /CLONE=UI-R-BJ1-avl-g-06-0-UI /FEA=EST /CNT=12 /TID=Rn.17114.1 /TIER=ConsEnd /STK=0 /UG=Rn.17114 /UG_TITLE=ESTs BE112276 family with sequence similarity 69, member B Fam69b 362090 NM_001014178 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1395335_at BF544005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF544005 /DB_XREF=gi:11635112 /DB_XREF=UI-R-E0-ce-c-04-0-UI.r1 /CLONE=UI-R-E0-ce-c-04-0-UI /FEA=EST /CNT=12 /TID=Rn.34392.1 /TIER=ConsEnd /STK=0 /UG=Rn.34392 /UG_TITLE=ESTs BF544005 1395336_at BE098691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098691 /DB_XREF=gi:8490557 /DB_XREF=UI-R-BJ1-atb-g-10-0-UI.s1 /CLONE=UI-R-BJ1-atb-g-10-0-UI /FEA=EST /CNT=12 /TID=Rn.36675.1 /TIER=ConsEnd /STK=0 /UG=Rn.36675 /UG_TITLE=ESTs, Moderately similar to T14738 hypothetical protein DKFZp564A2416.1 (H.sapiens) BE098691 spermatogenesis associated, serine-rich 2-like LOC100360294 100360294 XM_002730070 1395337_at AW141192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141192 /DB_XREF=gi:6160972 /DB_XREF=EST291228 /CLONE=RGIBF21 /FEA=EST /CNT=11 /TID=Rn.13016.1 /TIER=ConsEnd /STK=0 /UG=Rn.13016 /UG_TITLE=ESTs, Highly similar to TIGHT JUNCTION PROTEIN ZO-1 (M.musculus) AW141192 tight junction protein 1 Tjp1 292994 NM_001106266 0001825 // blastocyst formation // not recorded /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043116 // negative regulation of vascular permeability // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0071000 // response to magnetism // inferred from expression pattern /// 0071333 // cellular response to glucose stimulus // inferred from expression pattern 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // not recorded /// 0005912 // adherens junction // not recorded /// 0005913 // cell-cell adherens junction // not recorded /// 0005923 // tight junction // inferred from direct assay /// 0005923 // tight junction // inferred from electronic annotation /// 0005923 // tight junction // not recorded /// 0016020 // membrane // not recorded /// 0016323 // basolateral plasma membrane // not recorded /// 0030054 // cell junction // not recorded /// 0043296 // apical junction complex // not recorded /// 0046581 // intercellular canaliculus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0019904 // protein domain specific binding // not recorded 1395338_at BF289725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289725 /DB_XREF=gi:11220795 /DB_XREF=EST454316 /CLONE=RGIHK31 /FEA=EST /CNT=11 /TID=Rn.50001.1 /TIER=ConsEnd /STK=0 /UG=Rn.50001 /UG_TITLE=ESTs, Moderately similar to L130_HUMAN 130 KD LEUCINE-RICH PROTEIN (H.sapiens) BF289725 leucine-rich PPR-motif containing Lrpprc 313867 NM_001008519 0006350 // transcription // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0000794 // condensed nuclear chromosome // not recorded /// 0000794 // condensed nuclear chromosome // inferred from sequence or structural similarity /// 0000794 // condensed nuclear chromosome // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005640 // nuclear outer membrane // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005856 // cytoskeleton // not recorded /// 0005856 // cytoskeleton // inferred from sequence or structural similarity /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0048487 // beta-tubulin binding // not recorded /// 0048487 // beta-tubulin binding // inferred from sequence or structural similarity /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded /// 0051015 // actin filament binding // inferred from sequence or structural similarity 1395339_at BG664101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664101 /DB_XREF=gi:13886023 /DB_XREF=DRAADB07 /CLONE=DRAADB07 /FEA=EST /CNT=10 /TID=Rn.56103.1 /TIER=ConsEnd /STK=0 /UG=Rn.56103 /UG_TITLE=ESTs BG664101 imprinted and ancient Impact 497198 NM_001012235 0006417 // regulation of translation // inferred from electronic annotation 1395340_at AW918899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918899 /DB_XREF=gi:8084686 /DB_XREF=EST350203 /CLONE=RGIFA11 /FEA=EST /CNT=10 /TID=Rn.12511.1 /TIER=ConsEnd /STK=0 /UG=Rn.12511 /UG_TITLE=ESTs AW918899 solute carrier family 30 (zinc transporter), member 9 Slc30a9 498358 NM_001109088 0006812 // cation transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005856 // cytoskeleton // not recorded /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0008324 // cation transmembrane transporter activity // inferred from electronic annotation 1395341_at BF281916 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281916 /DB_XREF=gi:11212986 /DB_XREF=EST446507 /CLONE=RGIBK78 /FEA=EST /CNT=10 /TID=Rn.22309.1 /TIER=ConsEnd /STK=0 /UG=Rn.22309 /UG_TITLE=ESTs BF281916 NIMA (never in mitosis gene a)- related kinase 9 Nek9 299204 NM_001106747 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1395342_at AI598942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598942 /DB_XREF=gi:4607990 /DB_XREF=EST250645 /CLONE=REMDY83 /FEA=EST /CNT=10 /TID=Rn.39157.1 /TIER=ConsEnd /STK=0 /UG=Rn.39157 /UG_TITLE=ESTs, Moderately similar to S33377 P63 protein (H.sapiens) AI598942 cytoskeleton-associated protein 4 Ckap4 362859 NM_001108740 0005783 // endoplasmic reticulum // not recorded 1395343_at BF545305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545305 /DB_XREF=gi:11636412 /DB_XREF=UI-R-C0-jr-g-08-0-UI.r1 /CLONE=UI-R-C0-jr-g-08-0-UI /FEA=EST /CNT=9 /TID=Rn.17150.1 /TIER=ConsEnd /STK=0 /UG=Rn.17150 /UG_TITLE=ESTs, Highly similar to T9S3_MOUSE Transmembrane 9 superfamily protein member 3 precursor (M.musculus) BF545305 transmembrane 9 superfamily member 3 Tm9sf3 309475 XM_002725800 /// XM_220013 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // not recorded 1395344_at AI574919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI574919 /DB_XREF=gi:4544915 /DB_XREF=UI-R-G0-uf-f-08-0-UI.s1 /CLONE=UI-R-G0-uf-f-08-0-UI /FEA=EST /CNT=9 /TID=Rn.41584.1 /TIER=ConsEnd /STK=0 /UG=Rn.41584 /UG_TITLE=ESTs, Highly similar to MTR1_MOUSE MYOTUBULARIN-RELATED PROTEIN 1 (M.musculus) AI574919 myotubularin related protein 1 Mtmr1 317296 NM_001191725 /// XM_001059230 /// XM_228644 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded 0004438 // phosphatidylinositol-3-phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1395345_at BF282156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282156 /DB_XREF=gi:11213226 /DB_XREF=EST446747 /CLONE=RGIDC92 /FEA=EST /CNT=9 /TID=Rn.55475.1 /TIER=ConsEnd /STK=0 /UG=Rn.55475 /UG_TITLE=ESTs BF282156 1395346_at H33829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33829 /DB_XREF=gi:979246 /DB_XREF=EST110201 /CLONE=RPNBC56 /FEA=EST /CNT=9 /TID=Rn.24868.1 /TIER=ConsEnd /STK=0 /UG=Rn.24868 /UG_TITLE=ESTs, Weakly similar to Bmp2-induced gene (Mus musculus) (M.musculus) H33829 angio-associated, migratory cell protein Aamp 301512 NM_001106920 0014909 // smooth muscle cell migration // not recorded 0009986 // cell surface // not recorded 1395347_at BF565675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565675 /DB_XREF=gi:11675405 /DB_XREF=UI-R-BO1-ajo-e-12-0-UI.r1 /CLONE=UI-R-BO1-ajo-e-12-0-UI /FEA=EST /CNT=9 /TID=Rn.43389.1 /TIER=ConsEnd /STK=0 /UG=Rn.43389 /UG_TITLE=ESTs, Weakly similar to STS RAT STERYL-SULFATASE PRECURSOR (R.norvegicus) BF565675 arylsulfatase A Arsa 315222 NM_001034933 0006914 // autophagy // inferred from direct assay /// 0007339 // binding of sperm to zona pellucida // not recorded /// 0007339 // binding of sperm to zona pellucida // inferred from electronic annotation /// 0007417 // central nervous system development // inferred from direct assay /// 0007584 // response to nutrient // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0009268 // response to pH // inferred from direct assay /// 0043627 // response to estrogen stimulus // inferred from direct assay /// 0045471 // response to ethanol // inferred from direct assay /// 0051597 // response to methylmercury // inferred from direct assay 0000299 // integral to membrane of membrane fraction // not recorded /// 0000299 // integral to membrane of membrane fraction // inferred from electronic annotation /// 0001669 // acrosomal vesicle // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005768 // endosome // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0031232 // extrinsic to external side of plasma membrane // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004065 // arylsulfatase activity // inferred from direct assay /// 0004098 // cerebroside-sulfatase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008484 // sulfuric ester hydrolase activity // not recorded /// 0008484 // sulfuric ester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1395348_at AW143673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143673 /DB_XREF=gi:6163572 /DB_XREF=EST293969 /CLONE=RGIBX78 /FEA=EST /CNT=9 /TID=Rn.37666.1 /TIER=ConsEnd /STK=0 /UG=Rn.37666 /UG_TITLE=ESTs, Weakly similar to T08424 tweety protein - fruit fly (Drosophila melanogaster) (D.melanogaster) AW143673 tweety homolog 3 (Drosophila) Ttyh3 304315 NM_001107124 0005886 // plasma membrane // not recorded 0005254 // chloride channel activity // not recorded 1395349_at BF561061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561061 /DB_XREF=gi:11670791 /DB_XREF=UI-R-E1-fd-d-10-0-UI.r1 /CLONE=UI-R-E1-fd-d-10-0-UI /FEA=EST /CNT=8 /TID=Rn.53611.1 /TIER=ConsEnd /STK=0 /UG=Rn.53611 /UG_TITLE=ESTs BF561061 1395350_at AW919190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919190 /DB_XREF=gi:8084981 /DB_XREF=EST350494 /CLONE=RGIFD93 /FEA=EST /CNT=8 /TID=Rn.40824.1 /TIER=ConsEnd /STK=0 /UG=Rn.40824 /UG_TITLE=ESTs AW919190 1395351_at BF543381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543381 /DB_XREF=gi:11634488 /DB_XREF=UI-R-C3-tp-g-12-0-UI.r1 /CLONE=UI-R-C3-tp-g-12-0-UI /FEA=EST /CNT=8 /TID=Rn.55736.1 /TIER=ConsEnd /STK=0 /UG=Rn.55736 /UG_TITLE=ESTs BF543381 1395352_at BF282468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282468 /DB_XREF=gi:11213538 /DB_XREF=EST447059 /CLONE=RGIDN73 /FEA=EST /CNT=8 /TID=Rn.22272.1 /TIER=ConsEnd /STK=0 /UG=Rn.22272 /UG_TITLE=ESTs BF282468 COP9 constitutive photomorphogenic homolog subunit 3 (Arabidopsis) Cops3 287367 NM_001004200 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0008180 // signalosome // inferred from electronic annotation /// 0008180 // signalosome // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395353_at AW144304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144304 /DB_XREF=gi:6164203 /DB_XREF=EST294600 /CLONE=RGICP69 /FEA=EST /CNT=8 /TID=Rn.22555.1 /TIER=ConsEnd /STK=0 /UG=Rn.22555 /UG_TITLE=ESTs, Weakly similar to T20363 hypothetical protein D2045.2 - Caenorhabditis elegans (C.elegans) AW144304 similar to KIAA0368 RGD1306148 313196 XR_085838 /// XR_086255 0030433 // ER-associated protein catabolic process // not recorded 0000502 // proteasome complex // not recorded /// 0005634 // nucleus // not recorded /// 0005769 // early endosome // not recorded /// 0005770 // late endosome // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005802 // trans-Golgi network // not recorded /// 0005813 // centrosome // not recorded /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0030134 // ER to Golgi transport vesicle // not recorded 1395354_at BF549735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549735 /DB_XREF=gi:11659465 /DB_XREF=UI-R-A0-ay-b-08-0-UI.r1 /CLONE=UI-R-A0-ay-b-08-0-UI /FEA=EST /CNT=8 /TID=Rn.24031.1 /TIER=ConsEnd /STK=0 /UG=Rn.24031 /UG_TITLE=ESTs, Highly similar to p40 seven-transmembrane-domain protein (M.musculus) BF549735 LanC lantibiotic synthetase component C-like 1 (bacterial) Lancl1 114515 NM_053723 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // not recorded /// 0043295 // glutathione binding // not recorded /// 0043295 // glutathione binding // inferred from sequence or structural similarity /// 0043295 // glutathione binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050750 // low-density lipoprotein receptor binding // inferred from electronic annotation /// 0050750 // low-density lipoprotein receptor binding // not recorded 1395355_at AI555210 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555210 /DB_XREF=gi:4487573 /DB_XREF=UI-R-C2p-qu-c-08-0-UI.s1 /CLONE=UI-R-C2p-qu-c-08-0-UI /FEA=EST /CNT=8 /TID=Rn.38811.1 /TIER=ConsEnd /STK=0 /UG=Rn.38811 /UG_TITLE=ESTs AI555210 1395356_at BF562588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562588 /DB_XREF=gi:11672318 /DB_XREF=UI-R-BU0-anj-f-11-0-UI.r1 /CLONE=UI-R-BU0-anj-f-11-0-UI /FEA=EST /CNT=8 /TID=Rn.49205.1 /TIER=ConsEnd /STK=0 /UG=Rn.49205 /UG_TITLE=ESTs, Highly similar to T09067 extensin-like protein NG5 - mouse (M.musculus) BF562588 proline-rich transmembrane protein 1 Prrt1 406167 NM_001032285 0009607 // response to biotic stimulus // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1395357_at BG672052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672052 /DB_XREF=gi:13894151 /DB_XREF=DRNCBD05 /CLONE=DRNCBD05 /FEA=EST /CNT=15 /TID=Rn.53023.1 /TIER=ConsEnd /STK=0 /UG=Rn.53023 /UG_TITLE=ESTs BG672052 microtubule-associated protein 1B Map1b 29456 NM_019217 0001578 // microtubule bundle formation // inferred from direct assay /// 0001578 // microtubule bundle formation // not recorded /// 0001578 // microtubule bundle formation // inferred from electronic annotation /// 0007026 // negative regulation of microtubule depolymerization // inferred from direct assay /// 0007399 // nervous system development // inferred from expression pattern /// 0007416 // synapse assembly // inferred from expression pattern /// 0007417 // central nervous system development // inferred from expression pattern /// 0009611 // response to wounding // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009743 // response to carbohydrate stimulus // inferred from expression pattern /// 0009790 // embryo development // inferred from expression pattern /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0014012 // peripheral nervous system axon regeneration // inferred from expression pattern /// 0016358 // dendrite development // inferred from electronic annotation /// 0016358 // dendrite development // not recorded /// 0017085 // response to insecticide // inferred from expression pattern /// 0021700 // developmental maturation // inferred from expression pattern /// 0031116 // positive regulation of microtubule polymerization // inferred from direct assay /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0033189 // response to vitamin A // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0045773 // positive regulation of axon extension // inferred from mutant phenotype /// 0048666 // neuron development // inferred from expression pattern /// 0048678 // response to axon injury // inferred from expression pattern /// 0051789 // response to protein stimulus // inferred from expression pattern /// 0051915 // induction of synaptic plasticity by chemical substance // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043204 // perikaryon // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003779 // actin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005543 // phospholipid binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from mutant phenotype /// 0032403 // protein complex binding // inferred from direct assay 1395358_at BF562492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562492 /DB_XREF=gi:11672180 /DB_XREF=UI-R-BU0-ang-b-07-0-UI.r1 /CLONE=UI-R-BU0-ang-b-07-0-UI /FEA=EST /CNT=10 /TID=Rn.53889.1 /TIER=ConsEnd /STK=0 /UG=Rn.53889 /UG_TITLE=ESTs BF562492 Rho-related BTB domain containing 3 Rhobtb3 309922 NM_001107645 0042147 // retrograde transport, endosome to Golgi // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0017137 // Rab GTPase binding // not recorded 1395359_at BF559566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559566 /DB_XREF=gi:11669296 /DB_XREF=UI-R-A1-dy-b-06-0-UI.r1 /CLONE=UI-R-A1-dy-b-06-0-UI /FEA=EST /CNT=8 /TID=Rn.45729.1 /TIER=ConsEnd /STK=0 /UG=Rn.45729 /UG_TITLE=ESTs BF559566 1395360_at AW916829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916829 /DB_XREF=gi:8082671 /DB_XREF=EST348237 /CLONE=RGIDW78 /FEA=EST /CNT=7 /TID=Rn.55895.1 /TIER=ConsEnd /STK=0 /UG=Rn.55895 /UG_TITLE=ESTs, Weakly similar to ubiquitin specific protease 16; human ubiquitin processing protease (Homo sapiens) (H.sapiens) AW916829 ubiquitin specific peptidase 30 Usp30 304579 NM_001107153 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1395361_at AW142913 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142913 /DB_XREF=gi:6162812 /DB_XREF=EST293204 /CLONE=RGIAZ36 /FEA=EST /CNT=7 /TID=Rn.35629.1 /TIER=ConsEnd /STK=0 /UG=Rn.35629 /UG_TITLE=ESTs AW142913 Deoxyuridine triphosphatase Dut 497778 NM_001040271 /// NM_053592 0006226 // dUMP biosynthetic process // inferred from direct assay /// 0009117 // nucleotide metabolic process // inferred from electronic annotation /// 0046080 // dUTP metabolic process // inferred from electronic annotation /// 0046081 // dUTP catabolic process // inferred from direct assay 0005634 // nucleus // inferred from expression pattern /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from expression pattern /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0004170 // dUTP diphosphatase activity // inferred from direct assay /// 0004170 // dUTP diphosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030547 // receptor inhibitor activity // inferred from direct assay /// 0032556 // pyrimidine deoxyribonucleotide binding // inferred from direct assay /// 0042975 // peroxisome proliferator activated receptor binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1395362_at BG670699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670699 /DB_XREF=gi:13892798 /DB_XREF=DRNBED04 /CLONE=DRNBED04 /FEA=EST /CNT=7 /TID=Rn.49234.1 /TIER=ConsEnd /STK=0 /UG=Rn.49234 /UG_TITLE=ESTs BG670699 1395363_at AI102047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102047 /DB_XREF=gi:3706882 /DB_XREF=EST211336 /CLONE=RBRBY31 /FEA=EST /CNT=7 /TID=Rn.23010.1 /TIER=ConsEnd /STK=0 /UG=Rn.23010 /UG_TITLE=ESTs, Moderately similar to JC5224 methionine--tRNA ligase (H.sapiens) AI102047 methionine-tRNA synthetase Mars 299851 NM_001127659 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006431 // methionyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004825 // methionine-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1395364_at BE099982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099982 /DB_XREF=gi:8491866 /DB_XREF=UI-R-BJ1-atr-d-05-0-UI.s1 /CLONE=UI-R-BJ1-atr-d-05-0-UI /FEA=EST /CNT=7 /TID=Rn.6891.1 /TIER=ConsEnd /STK=0 /UG=Rn.6891 /UG_TITLE=ESTs, Moderately similar to INTERFERON-ALPHABETA RECEPTOR ALPHA CHAIN PRECURSOR (M.musculus) BE099982 interferon (alpha, beta and omega) receptor 1 Ifnar1 288264 NM_001105893 0007596 // blood coagulation // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0042110 // T cell activation // not recorded /// 0045351 // type I interferon biosynthetic process // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004904 // interferon receptor activity // not recorded /// 0005515 // protein binding // not recorded 1395365_at BF407347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407347 /DB_XREF=gi:11395322 /DB_XREF=UI-R-BJ2-bqe-h-07-0-UI.s1 /CLONE=UI-R-BJ2-bqe-h-07-0-UI /FEA=EST /CNT=7 /TID=Rn.37721.1 /TIER=ConsEnd /STK=0 /UG=Rn.37721 /UG_TITLE=ESTs BF407347 1395366_at BG669749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669749 /DB_XREF=gi:13891671 /DB_XREF=DRNAAIG10 /CLONE=DRNAAIG10 /FEA=EST /CNT=7 /TID=Rn.41729.1 /TIER=ConsEnd /STK=0 /UG=Rn.41729 /UG_TITLE=ESTs, Weakly similar to 0806162E protein COIII (M.musculus) BG669749 1395367_at BF408110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408110 /DB_XREF=gi:11396085 /DB_XREF=UI-R-BJ2-bqz-g-12-0-UI.s1 /CLONE=UI-R-BJ2-bqz-g-12-0-UI /FEA=EST /CNT=7 /TID=Rn.23059.1 /TIER=ConsEnd /STK=0 /UG=Rn.23059 /UG_TITLE=ESTs, Weakly similar to RNFB_MOUSE RING FINGER PROTEIN 12 (LIM DOMAIN INTERACTING RING FINGER PROTEIN) (RING FINGER LIM DOMAIN-BINDING PROTEIN) (R-LIM) (M.musculus) BF408110 ring finger protein 215 Rnf215 305478 NM_001107234 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395368_at BF408886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408886 /DB_XREF=gi:11396861 /DB_XREF=UI-R-BS2-bet-e-06-0-UI.s1 /CLONE=UI-R-BS2-bet-e-06-0-UI /FEA=EST /CNT=7 /TID=Rn.50256.1 /TIER=ConsEnd /STK=0 /UG=Rn.50256 /UG_TITLE=ESTs BF408886 1395369_at BI300958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300958 /DB_XREF=gi:14977238 /DB_XREF=UI-R-CV2-cil-h-09-0-UI.s1 /CLONE=UI-R-CV2-cil-h-09-0-UI /FEA=EST /CNT=7 /TID=Rn.55455.1 /TIER=ConsEnd /STK=0 /UG=Rn.55455 /UG_TITLE=ESTs BI300958 1395370_at AI230498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230498 /DB_XREF=gi:3814385 /DB_XREF=EST227193 /CLONE=REMCX29 /FEA=EST /CNT=7 /TID=Rn.22813.1 /TIER=ConsEnd /STK=0 /UG=Rn.22813 /UG_TITLE=ESTs, Highly similar to germ cell-less homolog (Drosophila) (Mus musculus) (M.musculus) AI230498 germ cell-less homolog 1 (Drosophila) Gmcl1 312516 NM_001010956 /// NM_001033931 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded 0005635 // nuclear envelope // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395371_at AA957790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957790 /DB_XREF=gi:4277680 /DB_XREF=UI-R-E1-fv-g-12-0-UI.s1 /CLONE=UI-R-E1-fv-g-12-0-UI /FEA=EST /CNT=7 /TID=Rn.25014.1 /TIER=ConsEnd /STK=0 /UG=Rn.25014 /UG_TITLE=ESTs AA957790 suppressor of defective silencing 3 homolog (S. cerevisiae) Suds3 360819 XM_001080131 /// XM_341092 0016481 // negative regulation of transcription // not recorded 0016580 // Sin3 complex // not recorded 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded /// 0042826 // histone deacetylase binding // not recorded 1395372_at BG668993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668993 /DB_XREF=gi:13890915 /DB_XREF=DRN04B06 /CLONE=DRN04B06 /FEA=EST /CNT=14 /TID=Rn.72676.1 /TIER=ConsEnd /STK=0 /UG=Rn.72676 /UG_TITLE=ESTs, Weakly similar to ITB2 MOUSE CELL SURFACE ADHESION GLYCOPROTEINS LFA-1CR3P150,95 BETA-SUBUNIT PRECURSOR (M.musculus) BG668993 1395373_at BF561546 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561546 /DB_XREF=gi:11671276 /DB_XREF=UI-R-C0-hx-b-04-0-UI.r1 /CLONE=UI-R-C0-hx-b-04-0-UI /FEA=EST /CNT=8 /TID=Rn.40791.1 /TIER=ConsEnd /STK=0 /UG=Rn.40791 /UG_TITLE=ESTs BF561546 1395374_at BF548045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548045 /DB_XREF=gi:11639152 /DB_XREF=UI-R-A0-bf-a-01-0-UI.r1 /CLONE=UI-R-A0-bf-a-01-0-UI /FEA=EST /CNT=7 /TID=Rn.56110.1 /TIER=ConsEnd /STK=0 /UG=Rn.56110 /UG_TITLE=ESTs BF548045 1395375_at BG672758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672758 /DB_XREF=gi:13894857 /DB_XREF=DRNCPA09 /CLONE=DRNCPA09 /FEA=EST /CNT=7 /TID=Rn.32145.1 /TIER=ConsEnd /STK=0 /UG=Rn.32145 /UG_TITLE=ESTs BG672758 tetratricopeptide repeat domain 9C Ttc9c 309196 NM_001007693 0006457 // protein folding // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1395376_at BE104111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104111 /DB_XREF=gi:8496216 /DB_XREF=UI-R-BX0-ark-h-11-0-UI.s1 /CLONE=UI-R-BX0-ark-h-11-0-UI /FEA=EST /CNT=7 /TID=Rn.33391.1 /TIER=ConsEnd /STK=0 /UG=Rn.33391 /UG_TITLE=ESTs BE104111 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae) Ddx11 316767 XM_001070646 /// XM_237570 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation 1395377_at BE107113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107113 /DB_XREF=gi:8499218 /DB_XREF=UI-R-BS1-ayq-a-05-0-UI.s1 /CLONE=UI-R-BS1-ayq-a-05-0-UI /FEA=EST /CNT=7 /TID=Rn.49916.1 /TIER=ConsEnd /STK=0 /UG=Rn.49916 /UG_TITLE=ESTs BE107113 bifunctional apoptosis regulator Bfar 304709 NM_001013125 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395378_at BF558969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558969 /DB_XREF=gi:11668699 /DB_XREF=UI-R-A0-ba-g-03-0-UI.r1 /CLONE=UI-R-A0-ba-g-03-0-UI /FEA=EST /CNT=7 /TID=Rn.41573.1 /TIER=ConsEnd /STK=0 /UG=Rn.41573 /UG_TITLE=ESTs, Highly similar to A Chain A, Serum Response Factor (H.sapiens) BF558969 serum response factor (c-fos serum response element-binding transcription factor) Srf 501099 NM_001109302 0001569 // patterning of blood vessels // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0001707 // mesoderm formation // not recorded /// 0001829 // trophectodermal cell differentiation // not recorded /// 0001947 // heart looping // not recorded /// 0002042 // cell migration involved in sprouting angiogenesis // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007015 // actin filament organization // not recorded /// 0007369 // gastrulation // not recorded /// 0007507 // heart development // not recorded /// 0007616 // long-term memory // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0009725 // response to hormone stimulus // not recorded /// 0010735 // positive regulation of transcription via serum response element binding // not recorded /// 0030155 // regulation of cell adhesion // not recorded /// 0030336 // negative regulation of cell migration // inferred from mutant phenotype /// 0034097 // response to cytokine stimulus // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // not recorded /// 0045941 // positive regulation of transcription // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045987 // positive regulation of smooth muscle contraction // not recorded /// 0046716 // muscle cell homeostasis // not recorded /// 0048589 // developmental growth // not recorded /// 0051491 // positive regulation of filopodium assembly // not recorded /// 0060261 // positive regulation of transcription initiation from RNA polymerase II promoter // not recorded /// 0090009 // primitive streak formation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003704 // specific RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0010736 // serum response element binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1395379_at AW144684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144684 /DB_XREF=gi:6164583 /DB_XREF=EST291001 /CLONE=RGIAX32 /FEA=EST /CNT=7 /TID=Rn.26786.1 /TIER=ConsEnd /STK=0 /UG=Rn.26786 /UG_TITLE=ESTs, Moderately similar to U2 SMALL NUCLEAR RIBONUCLEOPROTEIN AUXILIARY FACTOR 35 KD SUBUNIT RELATED-PROTEIN 2 (M.musculus) AW144684 zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2 Zrsr2 302670 XM_001067753 /// XM_217612 0005634 // nucleus // inferred from electronic annotation /// 0005689 // U12-type spliceosomal complex // not recorded /// 0005730 // nucleolus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395380_at BF562116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562116 /DB_XREF=gi:11671846 /DB_XREF=UI-R-E1-fs-c-05-0-UI.r1 /CLONE=UI-R-E1-fs-c-05-0-UI /FEA=EST /CNT=7 /TID=Rn.35333.1 /TIER=ConsEnd /STK=0 /UG=Rn.35333 /UG_TITLE=ESTs, Moderately similar to SELN_HUMAN SELENOPROTEIN N PRECURSOR (H.sapiens) BF562116 selenoprotein N, 1 Sepn1 362624 XM_002726603 /// XM_002729551 0005509 // calcium ion binding // inferred from electronic annotation 1395381_at BF542239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542239 /DB_XREF=gi:11633346 /DB_XREF=UI-R-A0-ah-b-04-0-UI.r1 /CLONE=UI-R-A0-ah-b-04-0-UI /FEA=EST /CNT=6 /TID=Rn.37835.1 /TIER=ConsEnd /STK=0 /UG=Rn.37835 /UG_TITLE=ESTs, Weakly similar to A53798 58K membrane-associated protein - rat (R.norvegicus) BF542239 1395382_at AW522848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522848 /DB_XREF=gi:7165233 /DB_XREF=UI-R-BO0-ahn-d-12-0-UI.s1 /CLONE=UI-R-BO0-ahn-d-12-0-UI /FEA=EST /CNT=6 /TID=Rn.64241.1 /TIER=ConsEnd /STK=0 /UG=Rn.64241 /UG_TITLE=ESTs AW522848 1395383_at BE116860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116860 /DB_XREF=gi:8508965 /DB_XREF=UI-R-BS1-azg-b-02-0-UI.s1 /CLONE=UI-R-BS1-azg-b-02-0-UI /FEA=EST /CNT=6 /TID=Rn.52749.1 /TIER=ConsEnd /STK=0 /UG=Rn.52749 /UG_TITLE=ESTs BE116860 similar to RIKEN cDNA 0610011L14 gene RGD1311066 296312 NM_001106535 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395384_at BG664969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664969 /DB_XREF=gi:13886891 /DB_XREF=DRABUG09 /CLONE=DRABUG09 /FEA=EST /CNT=6 /TID=Rn.64320.1 /TIER=ConsEnd /STK=0 /UG=Rn.64320 /UG_TITLE=ESTs BG664969 ubiquitin specific peptidase 31 Usp31 308959 NM_001107548 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation 1395385_at BF548145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548145 /DB_XREF=gi:11639252 /DB_XREF=UI-R-A0-bg-e-12-0-UI.r1 /CLONE=UI-R-A0-bg-e-12-0-UI /FEA=EST /CNT=6 /TID=Rn.24029.1 /TIER=ConsEnd /STK=0 /UG=Rn.24029 /UG_TITLE=ESTs BF548145 GTPase activating Rap/RanGAP domain-like 1 Garnl1 56785 NM_020083 /// XM_001079197 /// XM_578542 0032859 // activation of Ral GTPase activity // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // not recorded /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017123 // Ral GTPase activator activity // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // not recorded 1395386_at BF411881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411881 /DB_XREF=gi:11399870 /DB_XREF=UI-R-BT1-bmr-d-11-0-UI.s1 /CLONE=UI-R-BT1-bmr-d-11-0-UI /FEA=EST /CNT=6 /TID=Rn.49719.1 /TIER=ConsEnd /STK=0 /UG=Rn.49719 /UG_TITLE=ESTs BF411881 1395387_at BI293317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293317 /DB_XREF=gi:14954707 /DB_XREF=UI-R-DK0-cdn-f-02-0-UI.s1 /CLONE=UI-R-DK0-cdn-f-02-0-UI /FEA=EST /CNT=6 /TID=Rn.47911.1 /TIER=ConsEnd /STK=0 /UG=Rn.47911 /UG_TITLE=ESTs, Highly similar to CDV1 MOUSE CARNITINE DEFICIENCY-ASSOCIATED PROTEIN EXPRESSED IN VENTRICLE 1 (M.musculus) BI293317 intraflagellar transport 81 homolog (Chlamydomonas) Ift81 373066 NM_199120 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007283 // spermatogenesis // inferred from sequence or structural similarity /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005813 // centrosome // not recorded /// 0005929 // cilium // not recorded 1395388_at BI282029 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282029 /DB_XREF=gi:14932373 /DB_XREF=UI-R-CU0s-cbv-f-02-0-UI.s1 /CLONE=UI-R-CU0s-cbv-f-02-0-UI /FEA=EST /CNT=6 /TID=Rn.55992.1 /TIER=ConsEnd /STK=0 /UG=Rn.55992 /UG_TITLE=ESTs BI282029 1395389_at BG663624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663624 /DB_XREF=gi:13885546 /DB_XREF=DRAAALD08 /CLONE=DRAAALD08 /FEA=EST /CNT=6 /TID=Rn.61359.1 /TIER=ConsEnd /STK=0 /UG=Rn.61359 /UG_TITLE=ESTs BG663624 1395390_at BM384238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384238 /DB_XREF=gi:18184291 /DB_XREF=UI-R-DZ0-cks-e-03-0-UI.s1 /CLONE=UI-R-DZ0-cks-e-03-0-UI /FEA=EST /CNT=6 /TID=Rn.26826.1 /TIER=ConsEnd /STK=0 /UG=Rn.26826 /UG_TITLE=ESTs BM384238 1395391_at BF412774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412774 /DB_XREF=gi:11400763 /DB_XREF=UI-R-BT1-bnz-c-01-0-UI.s1 /CLONE=UI-R-BT1-bnz-c-01-0-UI /FEA=EST /CNT=6 /TID=Rn.64455.1 /TIER=ConsEnd /STK=0 /UG=Rn.64455 /UG_TITLE=ESTs BF412774 hypothetical protein LOC680045 LOC680045 680045 NM_001109389 1395392_at D86136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D86136 /DB_XREF=gi:1480041 /DB_XREF=D86136 /FEA=EST /CNT=6 /TID=Rn.44686.1 /TIER=ConsEnd /STK=0 /UG=Rn.44686 /UG_TITLE=ESTs D86136 protein phosphatase 1, regulatory subunit 3D Ppp1r3d 689995 NM_001109564 0005979 // regulation of glycogen biosynthetic process // inferred from direct assay /// 0005981 // regulation of glycogen catabolic process // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 0042587 // glycogen granule // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0019899 // enzyme binding // inferred from mutant phenotype 1395393_at BG671174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671174 /DB_XREF=gi:13893273 /DB_XREF=DRNBME08 /CLONE=DRNBME08 /FEA=EST /CNT=6 /TID=Rn.28117.1 /TIER=ConsEnd /STK=0 /UG=Rn.28117 /UG_TITLE=ESTs BG671174 1395394_at AW915385 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915385 /DB_XREF=gi:8081080 /DB_XREF=EST346689 /CLONE=RGICU80 /FEA=EST /CNT=6 /TID=Rn.23480.1 /TIER=ConsEnd /STK=0 /UG=Rn.23480 /UG_TITLE=ESTs, Weakly similar to HGF-regulated tyrosine kinase substrate (Mus musculus) (M.musculus) AW915385 golgi associated, gamma adaptin ear containing, ARF binding protein 2 Gga2 293455 NM_001100519 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0030117 // membrane coat // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // not recorded /// 0044431 // Golgi apparatus part // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030306 // ADP-ribosylation factor binding // inferred from electronic annotation /// 0030306 // ADP-ribosylation factor binding // not recorded 1395395_at BF291053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291053 /DB_XREF=gi:11222123 /DB_XREF=EST455644 /CLONE=RGIIH94 /FEA=EST /CNT=6 /TID=Rn.48379.1 /TIER=ConsEnd /STK=0 /UG=Rn.48379 /UG_TITLE=ESTs BF291053 1395396_at AA848942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848942 /DB_XREF=gi:2936482 /DB_XREF=EST191704 /CLONE=RLUAI22 /FEA=EST /CNT=6 /TID=Rn.34525.1 /TIER=ConsEnd /STK=0 /UG=Rn.34525 /UG_TITLE=ESTs, Weakly similar to T14317 rjs protein - mouse (M.musculus) AA848942 regulator of chromosome condensation 2 Rcc2 298594 XM_001072061 /// XM_216557 1395397_at AI010952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010952 /DB_XREF=gi:3224784 /DB_XREF=EST205403 /CLONE=RMUAU69 /FEA=EST /CNT=6 /TID=Rn.35351.1 /TIER=ConsEnd /STK=0 /UG=Rn.35351 /UG_TITLE=ESTs AI010952 0006464 // protein modification process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1395398_at AI579828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI579828 /DB_XREF=gi:4564204 /DB_XREF=UI-R-AD0-wg-g-02-0-UI.s2 /CLONE=UI-R-AD0-wg-g-02-0-UI /FEA=EST /CNT=6 /TID=Rn.38947.1 /TIER=ConsEnd /STK=0 /UG=Rn.38947 /UG_TITLE=ESTs AI579828 1395399_at BM387829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387829 /DB_XREF=gi:18187882 /DB_XREF=UI-R-CN1-cjk-o-08-0-UI.s1 /CLONE=UI-R-CN1-cjk-o-08-0-UI /FEA=EST /CNT=6 /TID=Rn.63831.1 /TIER=ConsEnd /STK=0 /UG=Rn.63831 /UG_TITLE=ESTs, Weakly similar to JC4026 ribosomal protein S1-like DNA-binding protein (H.sapiens) BM387829 zinc finger, CCHC domain containing 17 Zcchc17 500555 NM_001109267 0005730 // nucleolus // not recorded /// 0022625 // cytosolic large ribosomal subunit // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1395400_at AI178515 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178515 /DB_XREF=gi:3729153 /DB_XREF=EST222190 /CLONE=RPLCS10 /FEA=EST /CNT=6 /TID=Rn.25006.1 /TIER=ConsEnd /STK=0 /UG=Rn.25006 /UG_TITLE=ESTs, Weakly similar to T46363 hypothetical protein DKFZp434O0916.1 (H.sapiens) AI178515 similar to hypothetical protein MGC23280 RGD1305508 303275 XR_006091 /// XR_009409 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1395401_at BE106038 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106038 /DB_XREF=gi:8498140 /DB_XREF=UI-R-BO1-ask-b-09-0-UI.s1 /CLONE=UI-R-BO1-ask-b-09-0-UI /FEA=EST /CNT=6 /TID=Rn.46106.1 /TIER=ConsEnd /STK=0 /UG=Rn.46106 /UG_TITLE=ESTs, Moderately similar to T00492 hypothetical protein R29144_1 (H.sapiens) BE106038 downstream of Stk11 Dos 314622 NM_001108070 1395402_at BF542281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542281 /DB_XREF=gi:11633388 /DB_XREF=UI-R-C2-ms-b-06-0-UI.r1 /CLONE=UI-R-C2-ms-b-06-0-UI /FEA=EST /CNT=6 /TID=Rn.40951.1 /TIER=ConsEnd /STK=0 /UG=Rn.40951 /UG_TITLE=ESTs BF542281 Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans) Smg5 681012 XM_001059906 /// XM_002725989 0035303 // regulation of dephosphorylation // inferred from electronic annotation /// 0035303 // regulation of dephosphorylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051721 // protein phosphatase 2A binding // inferred from electronic annotation /// 0051721 // protein phosphatase 2A binding // not recorded 1395403_at BM385735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385735 /DB_XREF=gi:18185788 /DB_XREF=UI-R-CN1-clx-m-24-0-UI.s1 /CLONE=UI-R-CN1-clx-m-24-0-UI /FEA=EST /CNT=6 /TID=Rn.38669.1 /TIER=ConsEnd /STK=0 /UG=Rn.38669 /UG_TITLE=ESTs, Weakly similar to JC5269 neuron-specific signal trunduction protein Stac - mouse (M.musculus) BM385735 SH3 and cysteine rich domain 3 Stac3 362895 NM_001130558 0023034 // intracellular signaling pathway // inferred from electronic annotation 0042802 // identical protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1395404_at BE110529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110529 /DB_XREF=gi:8502634 /DB_XREF=UI-R-BJ1-avt-b-02-0-UI.s1 /CLONE=UI-R-BJ1-avt-b-02-0-UI /FEA=EST /CNT=6 /TID=Rn.37946.1 /TIER=ConsEnd /STK=0 /UG=Rn.37946 /UG_TITLE=ESTs, Weakly similar to JAK3 MOUSE TYROSINE-PROTEIN KINASE JAK3 (M.musculus) BE110529 fructosamine-3-kinase-related protein Fn3krp 303755 NM_001107077 0016301 // kinase activity // inferred from electronic annotation 1395405_at BE116248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116248 /DB_XREF=gi:8508353 /DB_XREF=UI-R-BS1-ayb-b-03-0-UI.s1 /CLONE=UI-R-BS1-ayb-b-03-0-UI /FEA=EST /CNT=6 /TID=Rn.35137.1 /TIER=ConsEnd /STK=0 /UG=Rn.35137 /UG_TITLE=ESTs BE116248 sorting nexin 26 Snx26 361540 XM_001079120 0007154 // cell communication // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1395406_at BF552212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552212 /DB_XREF=gi:11661942 /DB_XREF=UI-R-C1-lm-d-08-0-UI.r1 /CLONE=UI-R-C1-lm-d-08-0-UI /FEA=EST /CNT=6 /TID=Rn.47491.1 /TIER=ConsEnd /STK=0 /UG=Rn.47491 /UG_TITLE=ESTs, Weakly similar to T13847 sno protein - fruit fly (D.melanogaster) BF552212 Strawberry notch homolog 1 (Drosophila) Sbno1 304470 NM_001107138 0003677 // DNA binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1395407_at BF289260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289260 /DB_XREF=gi:11220330 /DB_XREF=EST453851 /CLONE=RGIHC79 /FEA=EST /CNT=6 /TID=Rn.46215.1 /TIER=ConsEnd /STK=0 /UG=Rn.46215 /UG_TITLE=ESTs, Highly similar to T00415 hypothetical protein H_248O15.1 (H.sapiens) BF289260 furry homolog (Drosophila) Fry 304244 NM_001170398 1395408_at AI058709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058709 /DB_XREF=gi:3332486 /DB_XREF=UI-R-C1-kt-f-12-0-UI.s1 /CLONE=UI-R-C1-kt-f-12-0-UI /FEA=EST /CNT=6 /TID=Rn.39383.1 /TIER=ConsEnd /STK=0 /UG=Rn.39383 /UG_TITLE=ESTs, Weakly similar to SH31_RAT SH3-CONTAINING GRB2-LIKE PROTEIN 1 (SH3 DOMAIN PROTEIN 2B) (SH3P8) (R.norvegicus) AI058709 nitric oxide synthase trafficker Nostrin 311111 NM_001024260 0006897 // endocytosis // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded 1395409_at BF522283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522283 /DB_XREF=gi:11630250 /DB_XREF=UI-R-C2p-qj-h-02-0-UI.r1 /CLONE=UI-R-C2p-qj-h-02-0-UI /FEA=EST /CNT=9 /TID=Rn.24600.1 /TIER=ConsEnd /STK=0 /UG=Rn.24600 /UG_TITLE=ESTs, Highly similar to A54021 phosphotyrosyl phosphatase activator PTPA (H.sapiens) BF522283 protein phosphatase 2A activator, regulatory subunit 4 Ppp2r4 362102 NM_001108577 0032515 // negative regulation of phosphoprotein phosphatase activity // not recorded /// 0032516 // positive regulation of phosphoprotein phosphatase activity // not recorded /// 0035307 // positive regulation of protein dephosphorylation // not recorded /// 0035308 // negative regulation of protein dephosphorylation // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043666 // regulation of phosphoprotein phosphatase activity // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0034704 // calcium channel complex // not recorded 0005102 // receptor binding // not recorded /// 0005524 // ATP binding // not recorded /// 0008160 // protein tyrosine phosphatase activator activity // not recorded /// 0008601 // protein phosphatase type 2A regulator activity // not recorded /// 0016887 // ATPase activity // not recorded /// 0019211 // phosphatase activator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0051721 // protein phosphatase 2A binding // not recorded 1395410_at AI717707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717707 /DB_XREF=gi:5034963 /DB_XREF=UI-R-Y0-acq-f-01-0-UI.s1 /CLONE=UI-R-Y0-acq-f-01-0-UI /FEA=EST /CNT=8 /TID=Rn.32606.1 /TIER=ConsEnd /STK=0 /UG=Rn.32606 /UG_TITLE=ESTs AI717707 protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha Ppp2r3a 363122 NM_001012202 0005509 // calcium ion binding // inferred from electronic annotation 1395411_at AW916787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916787 /DB_XREF=gi:8082628 /DB_XREF=EST348195 /CLONE=RGIDW28 /FEA=EST /CNT=7 /TID=Rn.22665.1 /TIER=ConsEnd /STK=0 /UG=Rn.22665 /UG_TITLE=ESTs, Highly similar to S25111 alpha-2-macroglobulin receptor precursor - mouse (M.musculus) AW916787 nicotinate phosphoribosyltransferase domain containing 1 Naprt1 315085 NM_207609 0006769 // nicotinamide metabolic process // not recorded /// 0006979 // response to oxidative stress // not recorded /// 0006979 // response to oxidative stress // inferred from sequence or structural similarity /// 0009435 // NAD biosynthetic process // inferred from direct assay /// 0009435 // NAD biosynthetic process // inferred from electronic annotation /// 0019358 // nicotinate nucleotide salvage // inferred from electronic annotation /// 0019363 // pyridine nucleotide biosynthetic process // inferred from electronic annotation /// 0019674 // NAD metabolic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation 0004514 // nicotinate-nucleotide diphosphorylase (carboxylating) activity // inferred from electronic annotation /// 0004516 // nicotinate phosphoribosyltransferase activity // inferred from direct assay /// 0004516 // nicotinate phosphoribosyltransferase activity // not recorded /// 0004516 // nicotinate phosphoribosyltransferase activity // inferred from sequence or structural similarity /// 0004516 // nicotinate phosphoribosyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1395412_at BF546337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546337 /DB_XREF=gi:11637450 /DB_XREF=UI-R-C1-kw-g-06-0-UI.r1 /CLONE=UI-R-C1-kw-g-06-0-UI /FEA=EST /CNT=7 /TID=Rn.64053.1 /TIER=ConsEnd /STK=0 /UG=Rn.64053 /UG_TITLE=ESTs, Highly similar to P137 MOUSE GPI-ANCHORED PROTEIN P137 (M.musculus) BF546337 cell cycle associated protein 1 Caprin1 362173 NM_001012185 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // not recorded 1395413_at BE116600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116600 /DB_XREF=gi:8508705 /DB_XREF=UI-R-BS1-ayd-b-04-0-UI.s1 /CLONE=UI-R-BS1-ayd-b-04-0-UI /FEA=EST /CNT=7 /TID=Rn.49216.1 /TIER=ConsEnd /STK=0 /UG=Rn.49216 /UG_TITLE=ESTs BE116600 Low density lipoprotein receptor-related protein 6 Lrp6 312781 NM_001107892 0001702 // gastrulation with mouth forming second // not recorded /// 0001756 // somitogenesis // not recorded /// 0001843 // neural tube closure // not recorded /// 0001947 // heart looping // not recorded /// 0003344 // pericardium morphogenesis // not recorded /// 0003401 // axis elongation // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0007268 // synaptic transmission // inferred from mutant phenotype /// 0009950 // dorsal/ventral axis specification // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0016055 // Wnt receptor signaling pathway // not recorded /// 0016337 // cell-cell adhesion // inferred from mutant phenotype /// 0021915 // neural tube development // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030917 // midbrain-hindbrain boundary development // not recorded /// 0035115 // embryonic forelimb morphogenesis // not recorded /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0035121 // tail morphogenesis // not recorded /// 0042074 // cell migration involved in gastrulation // not recorded /// 0042733 // embryonic digit morphogenesis // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0045449 // regulation of transcription // inferred from mutant phenotype /// 0048596 // embryonic camera-type eye morphogenesis // not recorded /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0060026 // convergent extension // not recorded /// 0060042 // retina morphogenesis in camera-type eye // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // inferred from mutant phenotype /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0071397 // cellular response to cholesterol // not recorded /// 0090009 // primitive streak formation // not recorded 0005624 // membrane fraction // not recorded /// 0005886 // plasma membrane // not recorded /// 0005901 // caveola // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0043025 // neuronal cell body // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005041 // low-density lipoprotein receptor activity // not recorded /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded 1395414_at BI296064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296064 /DB_XREF=gi:14960133 /DB_XREF=UI-R-DK0-cfd-h-09-0-UI.s1 /CLONE=UI-R-DK0-cfd-h-09-0-UI /FEA=EST /CNT=6 /TID=Rn.68237.1 /TIER=ConsEnd /STK=0 /UG=Rn.68237 /UG_TITLE=ESTs, Moderately similar to A40203 4-alpha-glucanotransferase (H.sapiens) BI296064 amylo-1,6-glucosidase, 4-alpha-glucanotransferase Agl 362029 NM_001108564 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // not recorded /// 0005978 // glycogen biosynthetic process // inferred from electronic annotation /// 0005980 // glycogen catabolic process // inferred from direct assay /// 0005980 // glycogen catabolic process // inferred from mutant phenotype /// 0007584 // response to nutrient // inferred from direct assay /// 0009725 // response to hormone stimulus // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0016234 // inclusion body // not recorded /// 0016529 // sarcoplasmic reticulum // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004133 // glycogen debranching enzyme activity // not recorded /// 0004134 // 4-alpha-glucanotransferase activity // inferred from direct assay /// 0004134 // 4-alpha-glucanotransferase activity // inferred from electronic annotation /// 0004134 // 4-alpha-glucanotransferase activity // inferred from mutant phenotype /// 0004135 // amylo-alpha-1,6-glucosidase activity // inferred from direct assay /// 0004135 // amylo-alpha-1,6-glucosidase activity // inferred from electronic annotation /// 0004135 // amylo-alpha-1,6-glucosidase activity // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0005529 // sugar binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0030247 // polysaccharide binding // not recorded /// 0031593 // polyubiquitin binding // not recorded /// 0043169 // cation binding // inferred from electronic annotation 1395415_at AW528857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528857 /DB_XREF=gi:7171271 /DB_XREF=UI-R-BT1-akj-d-08-0-UI.s1 /CLONE=UI-R-BT1-akj-d-08-0-UI /FEA=EST /CNT=6 /TID=Rn.46340.1 /TIER=ConsEnd /STK=0 /UG=Rn.46340 /UG_TITLE=ESTs AW528857 1395416_at BF546940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546940 /DB_XREF=gi:11638041 /DB_XREF=UI-R-C1-kh-g-02-0-UI.r1 /CLONE=UI-R-C1-kh-g-02-0-UI /FEA=EST /CNT=6 /TID=Rn.37137.1 /TIER=ConsEnd /STK=0 /UG=Rn.37137 /UG_TITLE=ESTs, Weakly similar to RNA binding protein (Caenorhabditis elegans) (C.elegans) BF546940 nuclear receptor coactivator 5 Ncoa5 296372 NM_001106543 0006412 // translation // inferred from electronic annotation 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1395417_at BF547200 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547200 /DB_XREF=gi:11638307 /DB_XREF=UI-R-BT0-qm-b-12-0-UI.r1 /CLONE=UI-R-BT0-qm-b-12-0-UI /FEA=EST /CNT=6 /TID=Rn.22554.1 /TIER=ConsEnd /STK=0 /UG=Rn.22554 /UG_TITLE=ESTs, Weakly similar to T28055 hypothetical protein ZK858.1 - Caenorhabditis elegans (C.elegans) BF547200 polymerase (DNA directed) sigma Pols 306672 NM_001107333 0042493 // response to drug // not recorded 0005634 // nucleus // not recorded 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1395418_at BE110637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110637 /DB_XREF=gi:8502742 /DB_XREF=UI-R-BJ1-avu-c-07-0-UI.s1 /CLONE=UI-R-BJ1-avu-c-07-0-UI /FEA=EST /CNT=6 /TID=Rn.52468.1 /TIER=ConsEnd /STK=0 /UG=Rn.52468 /UG_TITLE=ESTs, Weakly similar to S59069 Z13 protein - mouse (M.musculus) BE110637 zinc finger protein 131 Zfp131 310375 NM_001100698 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395419_at AA965060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965060 /DB_XREF=gi:4279934 /DB_XREF=UI-R-C0-ha-h-03-0-UI.s1 /CLONE=UI-R-C0-ha-h-03-0-UI /FEA=EST /CNT=6 /TID=Rn.37607.1 /TIER=ConsEnd /STK=0 /UG=Rn.37607 /UG_TITLE=ESTs, Highly similar to A48205 All-1 protein +GTE form - mouse (M.musculus) AA965060 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0035097 // histone methyltransferase complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042800 // histone methyltransferase activity (H3-K4 specific) // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395420_at BF548457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548457 /DB_XREF=gi:11639564 /DB_XREF=UI-R-A0-aa-f-04-0-UI.r1 /CLONE=UI-R-A0-aa-f-04-0-UI /FEA=EST /CNT=5 /TID=Rn.43962.1 /TIER=ConsEnd /STK=0 /UG=Rn.43962 /UG_TITLE=ESTs BF548457 1395421_at BF390052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390052 /DB_XREF=gi:11374894 /DB_XREF=UI-R-BS2-bdr-g-01-0-UI.s1 /CLONE=UI-R-BS2-bdr-g-01-0-UI /FEA=EST /CNT=5 /TID=Rn.52014.1 /TIER=ConsEnd /STK=0 /UG=Rn.52014 /UG_TITLE=ESTs BF390052 1395422_at BF288357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288357 /DB_XREF=gi:11219427 /DB_XREF=EST452948 /CLONE=RGIGS80 /FEA=EST /CNT=5 /TID=Rn.34326.1 /TIER=ConsEnd /STK=0 /UG=Rn.34326 /UG_TITLE=ESTs BF288357 1395423_at AW920217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920217 /DB_XREF=gi:8085933 /DB_XREF=EST351430 /CLONE=RGIGR38 /FEA=EST /CNT=5 /TID=Rn.15182.1 /TIER=ConsEnd /STK=0 /UG=Rn.15182 /UG_TITLE=ESTs AW920217 1395424_at BG380571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380571 /DB_XREF=gi:13305043 /DB_XREF=UI-R-CT0-bty-h-05-0-UI.s1 /CLONE=UI-R-CT0-bty-h-05-0-UI /FEA=EST /CNT=5 /TID=Rn.49346.1 /TIER=ConsEnd /STK=0 /UG=Rn.49346 /UG_TITLE=ESTs BG380571 1395425_at BE099398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099398 /DB_XREF=gi:8491274 /DB_XREF=UI-R-BJ1-atw-a-01-0-UI.s1 /CLONE=UI-R-BJ1-atw-a-01-0-UI /FEA=EST /CNT=5 /TID=Rn.31840.1 /TIER=ConsEnd /STK=0 /UG=Rn.31840 /UG_TITLE=ESTs BE099398 cleavage and polyadenylation specific factor 6 Cpsf6 299811 NM_001106785 0006397 // mRNA processing // not recorded 0005849 // mRNA cleavage factor complex // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0042382 // paraspeckles // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // not recorded 1395426_at AW142658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142658 /DB_XREF=gi:6162557 /DB_XREF=EST292910 /CLONE=RGIAR63 /FEA=EST /CNT=5 /TID=Rn.78102.1 /TIER=ConsEnd /STK=0 /UG=Rn.78102 /UG_TITLE=ESTs, Moderately similar to G02766 enterocyte differentiation promoting factor (H.sapiens) AW142658 ubiquitin-conjugating enzyme E2 variant 1 Ube2v1 296390 NM_001110345 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1395427_at AW918981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918981 /DB_XREF=gi:8084769 /DB_XREF=EST350285 /CLONE=RGIFB23 /FEA=EST /CNT=5 /TID=Rn.77605.1 /TIER=ConsEnd /STK=0 /UG=Rn.77605 /UG_TITLE=ESTs AW918981 1395428_at BE097105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097105 /DB_XREF=gi:8488036 /DB_XREF=UI-R-BO1-apt-c-05-0-UI.s1 /CLONE=UI-R-BO1-apt-c-05-0-UI /FEA=EST /CNT=5 /TID=Rn.49470.1 /TIER=ConsEnd /STK=0 /UG=Rn.49470 /UG_TITLE=ESTs BE097105 similar to novel protein RGD1563533 313713 XM_002726658 /// XM_002729564 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1395429_at BF281401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281401 /DB_XREF=gi:11212471 /DB_XREF=EST445992 /CLONE=RGIAE30 /FEA=EST /CNT=5 /TID=Rn.45955.1 /TIER=ConsEnd /STK=0 /UG=Rn.45955 /UG_TITLE=ESTs BF281401 Cholinergic receptor, nicotinic, alpha 7 Chrna7 25302 NM_012832 0000187 // activation of MAPK activity // not recorded /// 0001666 // response to hypoxia // not recorded /// 0001988 // positive regulation of heart rate involved in baroreceptor response to decreased systemic arterial blood pressure // inferred from electronic annotation /// 0001988 // positive regulation of heart rate involved in baroreceptor response to decreased systemic arterial blood pressure // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006811 // ion transport // not recorded /// 0006812 // cation transport // not recorded /// 0006816 // calcium ion transport // inferred from mutant phenotype /// 0006816 // calcium ion transport // not recorded /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006897 // endocytosis // inferred from electronic annotation /// 0006897 // endocytosis // not recorded /// 0007165 // signal transduction // not recorded /// 0007271 // synaptic transmission, cholinergic // inferred from mutant phenotype /// 0007271 // synaptic transmission, cholinergic // not recorded /// 0007271 // synaptic transmission, cholinergic // inferred from electronic annotation /// 0007613 // memory // inferred from electronic annotation /// 0007613 // memory // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008306 // associative learning // inferred from electronic annotation /// 0008306 // associative learning // not recorded /// 0014061 // regulation of norepinephrine secretion // inferred from electronic annotation /// 0014061 // regulation of norepinephrine secretion // not recorded /// 0019228 // regulation of action potential in neuron // inferred from direct assay /// 0019228 // regulation of action potential in neuron // inferred from mutant phenotype /// 0030317 // sperm motility // inferred from electronic annotation /// 0030317 // sperm motility // not recorded /// 0032094 // response to food // inferred from electronic annotation /// 0032094 // response to food // not recorded /// 0032225 // regulation of synaptic transmission, dopaminergic // inferred from electronic annotation /// 0032225 // regulation of synaptic transmission, dopaminergic // not recorded /// 0032691 // negative regulation of interleukin-1 beta production // inferred from electronic annotation /// 0032691 // negative regulation of interleukin-1 beta production // not recorded /// 0032715 // negative regulation of interleukin-6 production // inferred from electronic annotation /// 0032715 // negative regulation of interleukin-6 production // not recorded /// 0032720 // negative regulation of tumor necrosis factor production // inferred from electronic annotation /// 0032720 // negative regulation of tumor necrosis factor production // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0035094 // response to nicotine // not recorded /// 0035094 // response to nicotine // inferred from electronic annotation /// 0035095 // behavioral response to nicotine // inferred from electronic annotation /// 0035095 // behavioral response to nicotine // not recorded /// 0042110 // T cell activation // inferred from electronic annotation /// 0042110 // T cell activation // not recorded /// 0042113 // B cell activation // inferred from electronic annotation /// 0042113 // B cell activation // not recorded /// 0042221 // response to chemical stimulus // not recorded /// 0042391 // regulation of membrane potential // inferred from direct assay /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042391 // regulation of membrane potential // inferred from mutant phenotype /// 0042391 // regulation of membrane potential // not recorded /// 0042416 // dopamine biosynthetic process // inferred from expression pattern /// 0042698 // ovulation cycle // inferred from electronic annotation /// 0042698 // ovulation cycle // not recorded /// 0045471 // response to ethanol // not recorded /// 0045471 // response to ethanol // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0048149 // behavioral response to ethanol // inferred from electronic annotation /// 0048149 // behavioral response to ethanol // not recorded /// 0050727 // regulation of inflammatory response // not recorded /// 0050727 // regulation of inflammatory response // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // not recorded /// 0050890 // cognition // not recorded /// 0060112 // generation of ovulation cycle rhythm // inferred from electronic annotation /// 0060112 // generation of ovulation cycle rhythm // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from direct assay /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // not recorded /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // traceable author statement /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0032279 // asymmetric synapse // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0001540 // beta-amyloid binding // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from direct assay /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from mutant phenotype /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // not recorded /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0008179 // adenylate cyclase binding // inferred from physical interaction /// 0015464 // acetylcholine receptor activity // not recorded /// 0015643 // toxin binding // not recorded /// 0017081 // chloride channel regulator activity // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0042166 // acetylcholine binding // inferred from direct assay /// 0042166 // acetylcholine binding // inferred from mutant phenotype /// 0042166 // acetylcholine binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1395430_at BG375551 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375551 /DB_XREF=gi:13300023 /DB_XREF=UI-R-CV1-btc-f-03-0-UI.s1 /CLONE=UI-R-CV1-btc-f-03-0-UI /FEA=EST /CNT=5 /TID=Rn.45408.1 /TIER=ConsEnd /STK=0 /UG=Rn.45408 /UG_TITLE=ESTs BG375551 1395431_at AI112336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112336 /DB_XREF=gi:3512285 /DB_XREF=UI-R-Y0-mg-f-06-0-UI.s1 /CLONE=UI-R-Y0-mg-f-06-0-UI /FEA=EST /CNT=5 /TID=Rn.26755.1 /TIER=ConsEnd /STK=0 /UG=Rn.26755 /UG_TITLE=ESTs AI112336 1395432_at AI716103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716103 /DB_XREF=gi:5033404 /DB_XREF=UI-R-Y0-abd-f-09-0-UI.s1 /CLONE=UI-R-Y0-abd-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.41368.1 /TIER=ConsEnd /STK=0 /UG=Rn.41368 /UG_TITLE=ESTs, Weakly similar to NED4 MOUSE NEDD-4 PROTEIN (M.musculus) AI716103 1395433_at BI298143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298143 /DB_XREF=gi:14974423 /DB_XREF=UI-R-CV2-chf-h-05-0-UI.s1 /CLONE=UI-R-CV2-chf-h-05-0-UI /FEA=EST /CNT=5 /TID=Rn.65797.1 /TIER=ConsEnd /STK=0 /UG=Rn.65797 /UG_TITLE=ESTs BI298143 1395434_at BF400791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400791 /DB_XREF=gi:11388806 /DB_XREF=UI-R-CA0-bhg-c-03-0-UI.s1 /CLONE=UI-R-CA0-bhg-c-03-0-UI /FEA=EST /CNT=5 /TID=Rn.53951.1 /TIER=ConsEnd /STK=0 /UG=Rn.53951 /UG_TITLE=ESTs, Highly similar to CD40 receptor-associated factor 1 (M.musculus) BF400791 Tnf receptor-associated factor 3 Traf3 362788 NM_001108724 0007165 // signal transduction // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0042981 // regulation of apoptosis // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395435_at BF285208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285208 /DB_XREF=gi:11216278 /DB_XREF=EST449799 /CLONE=RGIFB79 /FEA=EST /CNT=5 /TID=Rn.40678.1 /TIER=ConsEnd /STK=0 /UG=Rn.40678 /UG_TITLE=ESTs, Moderately similar to Y415_HUMAN Hypothetical protein KIAA0415 (H.sapiens) BF285208 0005488 // binding // inferred from electronic annotation 1395436_at BF415556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415556 /DB_XREF=gi:11403545 /DB_XREF=UI-R-CA1-bka-e-09-0-UI.s1 /CLONE=UI-R-CA1-bka-e-09-0-UI /FEA=EST /CNT=5 /TID=Rn.49150.1 /TIER=ConsEnd /STK=0 /UG=Rn.49150 /UG_TITLE=ESTs BF415556 1395437_at BF287018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287018 /DB_XREF=gi:11218088 /DB_XREF=EST451609 /CLONE=RGIFY02 /FEA=EST /CNT=5 /TID=Rn.49265.1 /TIER=ConsEnd /STK=0 /UG=Rn.49265 /UG_TITLE=ESTs BF287018 1395438_at BF408726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408726 /DB_XREF=gi:11396701 /DB_XREF=UI-R-BT1-bnf-d-10-0-UI.s1 /CLONE=UI-R-BT1-bnf-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.52062.1 /TIER=ConsEnd /STK=0 /UG=Rn.52062 /UG_TITLE=ESTs BF408726 1395439_at AW142947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142947 /DB_XREF=gi:6162846 /DB_XREF=EST293239 /CLONE=RGIBA01 /FEA=EST /CNT=5 /TID=Rn.61563.1 /TIER=ConsEnd /STK=0 /UG=Rn.61563 /UG_TITLE=ESTs AW142947 1395440_at AW915843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915843 /DB_XREF=gi:8081553 /DB_XREF=EST347147 /CLONE=RGIDB42 /FEA=EST /CNT=5 /TID=Rn.55470.1 /TIER=ConsEnd /STK=0 /UG=Rn.55470 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) AW915843 similar to RIKEN cDNA 5133401N09 MGC125086 498695 NM_001037362 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004765 // shikimate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046316 // gluconokinase activity // inferred from electronic annotation 1395441_at BF562397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562397 /DB_XREF=gi:11672127 /DB_XREF=UI-R-BU0-ane-d-03-0-UI.r1 /CLONE=UI-R-BU0-ane-d-03-0-UI /FEA=EST /CNT=5 /TID=Rn.40405.1 /TIER=ConsEnd /STK=0 /UG=Rn.40405 /UG_TITLE=ESTs, Weakly similar to heterogeneous nuclear ribonucleoprotein K (Rattus norvegicus) (R.norvegicus) BF562397 poly(rC) binding protein 4 Pcbp4 363133 NM_001191883 /// XM_001071111 /// XM_343468 0003723 // RNA binding // inferred from electronic annotation 1395442_at BF398196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398196 /DB_XREF=gi:11383182 /DB_XREF=UI-R-BS2-ben-f-04-0-UI.s1 /CLONE=UI-R-BS2-ben-f-04-0-UI /FEA=EST /CNT=5 /TID=Rn.31927.1 /TIER=ConsEnd /STK=0 /UG=Rn.31927 /UG_TITLE=ESTs BF398196 1395443_at BF396088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396088 /DB_XREF=gi:11381060 /DB_XREF=UI-R-CA1-bcb-b-10-0-UI.s1 /CLONE=UI-R-CA1-bcb-b-10-0-UI /FEA=EST /CNT=5 /TID=Rn.63574.1 /TIER=ConsEnd /STK=0 /UG=Rn.63574 /UG_TITLE=ESTs BF396088 1395444_at BF412266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412266 /DB_XREF=gi:11400255 /DB_XREF=UI-R-BT1-bnb-d-06-0-UI.s1 /CLONE=UI-R-BT1-bnb-d-06-0-UI /FEA=EST /CNT=5 /TID=Rn.62043.1 /TIER=ConsEnd /STK=0 /UG=Rn.62043 /UG_TITLE=ESTs BF412266 1395445_at AI548975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548975 /DB_XREF=gi:4466463 /DB_XREF=UI-R-C3-tv-a-03-0-UI.s1 /CLONE=UI-R-C3-tv-a-03-0-UI /FEA=EST /CNT=5 /TID=Rn.50058.1 /TIER=ConsEnd /STK=0 /UG=Rn.50058 /UG_TITLE=ESTs AI548975 regulatory factor X-associated protein Rfxap 499617 NM_001044263 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded 1395446_at AW916813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916813 /DB_XREF=gi:8082654 /DB_XREF=EST348221 /CLONE=RGIDW60 /FEA=EST /CNT=5 /TID=Rn.56004.1 /TIER=ConsEnd /STK=0 /UG=Rn.56004 /UG_TITLE=ESTs AW916813 1395447_at BF567711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567711 /DB_XREF=gi:11677441 /DB_XREF=UI-R-BO0-ahj-e-06-0-UI.r1 /CLONE=UI-R-BO0-ahj-e-06-0-UI /FEA=EST /CNT=5 /TID=Rn.64239.1 /TIER=ConsEnd /STK=0 /UG=Rn.64239 /UG_TITLE=ESTs BF567711 ermin, ERM-like protein Ermn 295619 NM_001008311 0001763 // morphogenesis of a branching structure // inferred from electronic annotation /// 0001763 // morphogenesis of a branching structure // not recorded /// 0007015 // actin filament organization // inferred from electronic annotation /// 0007015 // actin filament organization // not recorded /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0031344 // regulation of cell projection organization // inferred from electronic annotation /// 0031344 // regulation of cell projection organization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030175 // filopodium // inferred from electronic annotation /// 0030175 // filopodium // not recorded /// 0033269 // internode region of axon // inferred from electronic annotation /// 0033269 // internode region of axon // not recorded /// 0033270 // paranode region of axon // inferred from electronic annotation /// 0033270 // paranode region of axon // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043209 // myelin sheath // inferred from electronic annotation /// 0043209 // myelin sheath // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1395448_at BF415075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415075 /DB_XREF=gi:11403064 /DB_XREF=UI-R-BJ2-bou-d-05-0-UI.s1 /CLONE=UI-R-BJ2-bou-d-05-0-UI /FEA=EST /CNT=5 /TID=Rn.54293.1 /TIER=ConsEnd /STK=0 /UG=Rn.54293 /UG_TITLE=ESTs BF415075 synapse defective 1, Rho GTPase, homolog 1 (C. elegans) Syde1 362842 NM_001191876 /// XM_001077806 /// XM_343173 0007165 // signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 1395449_at BG673211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG673211 /DB_XREF=gi:13895310 /DB_XREF=DRNBPH04 /CLONE=DRNBPH04 /FEA=EST /CNT=5 /TID=Rn.29770.1 /TIER=ConsEnd /STK=0 /UG=Rn.29770 /UG_TITLE=ESTs, Weakly similar to S02003 neurofilament triplet H protein - rat (R.norvegicus) BG673211 ribosomal L24 domain containing 1 Rsl24d1 363099 NM_001014212 0006412 // translation // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1395450_at BE102568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102568 /DB_XREF=gi:8494667 /DB_XREF=UI-R-BT1-aqo-d-02-0-UI.s1 /CLONE=UI-R-BT1-aqo-d-02-0-UI /FEA=EST /CNT=5 /TID=Rn.44874.1 /TIER=ConsEnd /STK=0 /UG=Rn.44874 /UG_TITLE=ESTs, Weakly similar to HMG2 RAT HIGH MOBILITY GROUP PROTEIN HMG2 (R.norvegicus) BE102568 high-mobility group box 4-like /// similar to RIKEN cDNA 1700001F22 LOC100364877 /// RGD1561558 100364877 /// 317314 XM_001066357 /// XM_002727690 /// XM_228669 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1395451_at BF413728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413728 /DB_XREF=gi:11401717 /DB_XREF=UI-R-CA0-boh-g-12-0-UI.s1 /CLONE=UI-R-CA0-boh-g-12-0-UI /FEA=EST /CNT=5 /TID=Rn.62441.1 /TIER=ConsEnd /STK=0 /UG=Rn.62441 /UG_TITLE=ESTs BF413728 1395452_at AW535316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535316 /DB_XREF=gi:7177730 /DB_XREF=UI-R-C4-alv-g-01-0-UI.s1 /CLONE=UI-R-C4-alv-g-01-0-UI /FEA=EST /CNT=5 /TID=Rn.44002.1 /TIER=ConsEnd /STK=0 /UG=Rn.44002 /UG_TITLE=ESTs AW535316 1395453_at BF417952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417952 /DB_XREF=gi:11405941 /DB_XREF=UI-R-CA0-bly-e-06-0-UI.s1 /CLONE=UI-R-CA0-bly-e-06-0-UI /FEA=EST /CNT=5 /TID=Rn.63302.1 /TIER=ConsEnd /STK=0 /UG=Rn.63302 /UG_TITLE=ESTs, Highly similar to JC4980 plexin 1 precursor - mouse (M.musculus) BF417952 similar to plexin 1 RGD1560871 362398 XM_001072622 /// XM_002729398 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1395454_at AW920180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920180 /DB_XREF=gi:8085895 /DB_XREF=EST351393 /CLONE=RGIGQ67 /FEA=EST /CNT=5 /TID=Rn.47341.1 /TIER=ConsEnd /STK=0 /UG=Rn.47341 /UG_TITLE=ESTs AW920180 osteopetrosis associated transmembrane protein 1-like /// osteopetrosis associated transmembrane protein 1 LOC100362414 /// Ostm1 100362414 /// 499474 NM_001029925 /// XM_002728982 0030316 // osteoclast differentiation // inferred from electronic annotation /// 0030316 // osteoclast differentiation // not recorded 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395455_at AI713082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI713082 /DB_XREF=gi:5016882 /DB_XREF=UI-R-Y0-aba-a-06-0-UI.s1 /CLONE=UI-R-Y0-aba-a-06-0-UI /FEA=EST /CNT=5 /TID=Rn.26836.1 /TIER=ConsEnd /STK=0 /UG=Rn.26836 /UG_TITLE=ESTs AI713082 heterogeneous nuclear ribonucleoprotein H3 (2H9) Hnrnph3 361838 NM_001108532 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395456_at AW919228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919228 /DB_XREF=gi:8085020 /DB_XREF=EST350532 /CLONE=RGIFO14 /FEA=EST /CNT=5 /TID=Rn.80842.1 /TIER=ConsEnd /STK=0 /UG=Rn.80842 /UG_TITLE=ESTs AW919228 1395457_at BM387150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387150 /DB_XREF=gi:18187203 /DB_XREF=UI-R-CN1-cji-h-05-0-UI.s1 /CLONE=UI-R-CN1-cji-h-05-0-UI /FEA=EST /CNT=5 /TID=Rn.54019.1 /TIER=ConsEnd /STK=0 /UG=Rn.54019 /UG_TITLE=ESTs BM387150 1395458_at AI409816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409816 /DB_XREF=gi:4253320 /DB_XREF=EST238109 /CLONE=RPLDO45 /FEA=EST /CNT=5 /TID=Rn.40936.1 /TIER=ConsEnd /STK=0 /UG=Rn.40936 /UG_TITLE=ESTs, Weakly similar to T08855 nephrocystin (H.sapiens) AI409816 nephronophthisis 1 (juvenile) homolog (human) Nphp1 296136 NM_001106506 0030030 // cell projection organization // not recorded /// 0048515 // spermatid differentiation // not recorded /// 0060041 // retina development in camera-type eye // not recorded 0031514 // motile secondary cilium // not recorded /// 0032391 // photoreceptor connecting cilium // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1395459_at AI575802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575802 /DB_XREF=gi:4560178 /DB_XREF=UI-R-Y0-uy-b-04-0-UI.s1 /CLONE=UI-R-Y0-uy-b-04-0-UI /FEA=EST /CNT=5 /TID=Rn.26798.1 /TIER=ConsEnd /STK=0 /UG=Rn.26798 /UG_TITLE=ESTs AI575802 1395460_at BI290497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290497 /DB_XREF=gi:14949125 /DB_XREF=UI-R-DK0-cgd-a-02-0-UI.s1 /CLONE=UI-R-DK0-cgd-a-02-0-UI /FEA=EST /CNT=5 /TID=Rn.49381.1 /TIER=ConsEnd /STK=0 /UG=Rn.49381 /UG_TITLE=ESTs BI290497 cask-interacting protein 2 Caskin2 303678 NM_001107065 1395461_at BI294552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294552 /DB_XREF=gi:14957114 /DB_XREF=UI-R-DK0-cel-e-10-0-UI.s1 /CLONE=UI-R-DK0-cel-e-10-0-UI /FEA=EST /CNT=5 /TID=Rn.39052.1 /TIER=ConsEnd /STK=0 /UG=Rn.39052 /UG_TITLE=ESTs BI294552 adenomatosis polyposis coli 2 Apc2 299611 NM_001106769 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation 0016342 // catenin complex // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0008017 // microtubule binding // inferred from electronic annotation 1395462_at BM386415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386415 /DB_XREF=gi:18186468 /DB_XREF=UI-R-CN1-cjf-n-02-0-UI.s1 /CLONE=UI-R-CN1-cjf-n-02-0-UI /FEA=EST /CNT=5 /TID=Rn.43468.1 /TIER=ConsEnd /STK=0 /UG=Rn.43468 /UG_TITLE=ESTs, Moderately similar to HK31 MOUSE HOMEOBOX PROTEIN NKX-3.1 (M.musculus) BM386415 NK3 homeobox 1 Nkx3-1 305999 NM_001034144 0001756 // somitogenesis // inferred from electronic annotation /// 0001756 // somitogenesis // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007431 // salivary gland development // inferred from electronic annotation /// 0007431 // salivary gland development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0043569 // negative regulation of insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0043569 // negative regulation of insulin-like growth factor receptor signaling pathway // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0060037 // pharyngeal system development // inferred from electronic annotation /// 0060037 // pharyngeal system development // not recorded /// 0060442 // branching involved in prostate gland morphogenesis // inferred from electronic annotation /// 0060442 // branching involved in prostate gland morphogenesis // not recorded /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060664 // epithelial cell proliferation involved in salivary gland morphogenesis // not recorded /// 0060770 // negative regulation of epithelial cell proliferation involved in prostate gland development // inferred from electronic annotation /// 0060770 // negative regulation of epithelial cell proliferation involved in prostate gland development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1395463_at BE099121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099121 /DB_XREF=gi:8490997 /DB_XREF=UI-R-BJ1-ati-e-07-0-UI.s1 /CLONE=UI-R-BJ1-ati-e-07-0-UI /FEA=EST /CNT=5 /TID=Rn.41371.1 /TIER=ConsEnd /STK=0 /UG=Rn.41371 /UG_TITLE=ESTs BE099121 1395464_at AI237163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237163 /DB_XREF=gi:3830669 /DB_XREF=EST233725 /CLONE=ROVDP39 /FEA=EST /CNT=5 /TID=Rn.25415.1 /TIER=ConsEnd /STK=0 /UG=Rn.25415 /UG_TITLE=ESTs, Moderately similar to Y176_HUMAN HYPOTHETICAL PROTEIN KIAA0176 (H.sapiens) AI237163 potassium channel tetramerisation domain containing 17 Kctd17 300317 NM_001134529 0006813 // potassium ion transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1395465_at BF419215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419215 /DB_XREF=gi:11407209 /DB_XREF=UI-R-BJ2-bqp-a-09-0-UI.s1 /CLONE=UI-R-BJ2-bqp-a-09-0-UI /FEA=EST /CNT=5 /TID=Rn.40558.1 /TIER=ConsEnd /STK=0 /UG=Rn.40558 /UG_TITLE=ESTs, Highly similar to RA1L_HUMAN MRNA-ASSOCIATED PROTEIN MRNP 41 (H.sapiens) BF419215 RAE1 RNA export 1 homolog (S. pombe) Rae1 362281 NM_001033708 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 1395466_at AW527441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527441 /DB_XREF=gi:7169855 /DB_XREF=UI-R-BO1-ajt-d-05-0-UI.s1 /CLONE=UI-R-BO1-ajt-d-05-0-UI /FEA=EST /CNT=5 /TID=Rn.44957.1 /TIER=ConsEnd /STK=0 /UG=Rn.44957 /UG_TITLE=ESTs AW527441 annexin A9 Anxa9 689830 XM_001072193 /// XM_002726022 0016337 // cell-cell adhesion // not recorded 0005829 // cytosol // not recorded /// 0009986 // cell surface // not recorded 0001786 // phosphatidylserine binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005543 // phospholipid binding // not recorded /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation /// 0015464 // acetylcholine receptor activity // not recorded 1395467_at AI145705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145705 /DB_XREF=gi:3667504 /DB_XREF=UI-R-BT0-qd-e-04-0-UI.s1 /CLONE=UI-R-BT0-qd-e-04-0-UI /FEA=EST /CNT=5 /TID=Rn.33577.1 /TIER=ConsEnd /STK=0 /UG=Rn.33577 /UG_TITLE=ESTs, Highly similar to CNE6_MOUSE COPINE VI (NEURONAL-COPINE) (N-COPINE) (M.musculus) AI145705 copine VI Cpne6 691478 NM_001191113 /// XM_001078470 /// XM_002725106 0005624 // membrane fraction // not recorded /// 0030424 // axon // not recorded /// 0030425 // dendrite // not recorded 0001786 // phosphatidylserine binding // not recorded 1395468_at BF409952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409952 /DB_XREF=gi:11397927 /DB_XREF=UI-R-CA1-bjy-g-03-0-UI.s1 /CLONE=UI-R-CA1-bjy-g-03-0-UI /FEA=EST /CNT=5 /TID=Rn.41186.1 /TIER=ConsEnd /STK=0 /UG=Rn.41186 /UG_TITLE=ESTs BF409952 1395469_at AW251983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251983 /DB_XREF=gi:6595574 /DB_XREF=UI-R-BJ0-adc-d-11-0-UI.s1 /CLONE=UI-R-BJ0-adc-d-11-0-UI /FEA=EST /CNT=5 /TID=Rn.40601.1 /TIER=ConsEnd /STK=0 /UG=Rn.40601 /UG_TITLE=ESTs AW251983 1395470_at BF402580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402580 /DB_XREF=gi:11390555 /DB_XREF=UI-R-CA0-bhm-a-10-0-UI.s1 /CLONE=UI-R-CA0-bhm-a-10-0-UI /FEA=EST /CNT=5 /TID=Rn.52874.1 /TIER=ConsEnd /STK=0 /UG=Rn.52874 /UG_TITLE=ESTs BF402580 1395471_at AW524834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524834 /DB_XREF=gi:7167219 /DB_XREF=UI-R-BO0-ahy-g-12-0-UI.s1 /CLONE=UI-R-BO0-ahy-g-12-0-UI /FEA=EST /CNT=5 /TID=Rn.34102.1 /TIER=ConsEnd /STK=0 /UG=Rn.34102 /UG_TITLE=ESTs AW524834 1395472_at BF419170 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419170 /DB_XREF=gi:11407122 /DB_XREF=UI-R-BJ2-bqn-h-10-0-UI.s1 /CLONE=UI-R-BJ2-bqn-h-10-0-UI /FEA=EST /CNT=5 /TID=Rn.49378.1 /TIER=ConsEnd /STK=0 /UG=Rn.49378 /UG_TITLE=ESTs BF419170 leucine rich repeat containing 17 Lrrc17 502715 NM_001025155 0045671 // negative regulation of osteoclast differentiation // inferred from electronic annotation /// 0048539 // bone marrow development // inferred from electronic annotation 0005615 // extracellular space // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1395473_at BG371945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371945 /DB_XREF=gi:13268482 /DB_XREF=UI-R-CV0-brk-c-09-0-UI.s1 /CLONE=UI-R-CV0-brk-c-09-0-UI /FEA=EST /CNT=5 /TID=Rn.27065.1 /TIER=ConsEnd /STK=0 /UG=Rn.27065 /UG_TITLE=ESTs BG371945 guanine nucleotide binding protein (G protein), beta polypeptide 3 Gnb3 60449 NM_021858 0007165 // signal transduction // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded 0004871 // signal transducer activity // inferred from electronic annotation 1395474_at AW530415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530415 /DB_XREF=gi:7172792 /DB_XREF=UI-R-BU0-amv-h-09-0-UI.s1 /CLONE=UI-R-BU0-amv-h-09-0-UI /FEA=EST /CNT=5 /TID=Rn.38772.1 /TIER=ConsEnd /STK=0 /UG=Rn.38772 /UG_TITLE=ESTs AW530415 1395475_at BI298747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298747 /DB_XREF=gi:14975027 /DB_XREF=UI-R-CV2-chn-c-04-0-UI.s1 /CLONE=UI-R-CV2-chn-c-04-0-UI /FEA=EST /CNT=5 /TID=Rn.66250.1 /TIER=ConsEnd /STK=0 /UG=Rn.66250 /UG_TITLE=ESTs BI298747 1395476_at BI298290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298290 /DB_XREF=gi:14974565 /DB_XREF=UI-R-CV2-chh-e-06-0-UI.s1 /CLONE=UI-R-CV2-chh-e-06-0-UI /FEA=EST /CNT=5 /TID=Rn.66281.1 /TIER=ConsEnd /STK=0 /UG=Rn.66281 /UG_TITLE=ESTs BI298290 1395477_at BF396114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396114 /DB_XREF=gi:11381086 /DB_XREF=UI-R-CA1-bcb-e-03-0-UI.s1 /CLONE=UI-R-CA1-bcb-e-03-0-UI /FEA=EST /CNT=5 /TID=Rn.61324.1 /TIER=ConsEnd /STK=0 /UG=Rn.61324 /UG_TITLE=ESTs, Weakly similar to CLASS I HISTOCOMPATIBILITY ANTIGEN NON-RT1.A ALPHA-1 CHAIN PRECURSOR (R.norvegicus) BF396114 1395478_at BF411920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411920 /DB_XREF=gi:11399949 /DB_XREF=UI-R-BT1-bmx-f-03-0-UI.s1 /CLONE=UI-R-BT1-bmx-f-03-0-UI /FEA=EST /CNT=5 /TID=Rn.63563.1 /TIER=ConsEnd /STK=0 /UG=Rn.63563 /UG_TITLE=ESTs, Highly similar to EF12 MOUSE ELONGATION FACTOR 1-ALPHA 2 (R.norvegicus) BF411920 eukaryotic translation elongation factor 1 alpha 2 Eef1a2 24799 NM_012660 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0006414 // translational elongation // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0010035 // response to inorganic substance // inferred from expression pattern 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005853 // eukaryotic translation elongation factor 1 complex // not recorded /// 0043025 // neuronal cell body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0003746 // translation elongation factor activity // not recorded /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1395479_at BG373428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373428 /DB_XREF=gi:13270005 /DB_XREF=UI-R-CS0-bsd-b-05-0-UI.s1 /CLONE=UI-R-CS0-bsd-b-05-0-UI /FEA=EST /CNT=5 /TID=Rn.27699.1 /TIER=ConsEnd /STK=0 /UG=Rn.27699 /UG_TITLE=ESTs BG373428 brix domain containing 2 Bxdc2 294799 NM_001029915 0006412 // translation // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1395480_at BI303370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303370 /DB_XREF=gi:14979650 /DB_XREF=UI-R-DQ0-cja-a-07-0-UI.s1 /CLONE=UI-R-DQ0-cja-a-07-0-UI /FEA=EST /CNT=5 /TID=Rn.50512.1 /TIER=ConsEnd /STK=0 /UG=Rn.50512 /UG_TITLE=ESTs BI303370 cancer susceptibility candidate 5 Casc5 311327 NM_001170594 /// XM_001080790 /// XM_230465 0008608 // attachment of spindle microtubules to kinetochore // not recorded /// 0071173 // spindle assembly checkpoint // not recorded 0001669 // acrosomal vesicle // not recorded /// 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1395481_at BI296456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296456 /DB_XREF=gi:14960896 /DB_XREF=UI-R-CV2-cgr-d-09-0-UI.s1 /CLONE=UI-R-CV2-cgr-d-09-0-UI /FEA=EST /CNT=5 /TID=Rn.66194.1 /TIER=ConsEnd /STK=0 /UG=Rn.66194 /UG_TITLE=ESTs BI296456 1395482_at BI300477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300477 /DB_XREF=gi:14976757 /DB_XREF=UI-R-CV2-cif-d-10-0-UI.s1 /CLONE=UI-R-CV2-cif-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.66308.1 /TIER=ConsEnd /STK=0 /UG=Rn.66308 /UG_TITLE=ESTs BI300477 1395483_at BI296524 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296524 /DB_XREF=gi:14961033 /DB_XREF=UI-R-CV2-cgs-c-03-0-UI.s1 /CLONE=UI-R-CV2-cgs-c-03-0-UI /FEA=EST /CNT=5 /TID=Rn.66978.1 /TIER=ConsEnd /STK=0 /UG=Rn.66978 /UG_TITLE=ESTs BI296524 1395484_at BI298435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298435 /DB_XREF=gi:14974715 /DB_XREF=UI-R-CV2-chi-c-07-0-UI.s1 /CLONE=UI-R-CV2-chi-c-07-0-UI /FEA=EST /CNT=5 /TID=Rn.73056.1 /TIER=ConsEnd /STK=0 /UG=Rn.73056 /UG_TITLE=ESTs BI298435 1395485_s_at AA859008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859008 /DB_XREF=gi:4229277 /DB_XREF=UI-R-A0-bi-d-08-0-UI.s1 /CLONE=UI-R-A0-bi-d-08-0-UI /FEA=EST /CNT=5 /TID=Rn.16942.1 /TIER=ConsEnd /STK=0 /UG=Rn.16942 /UG_TITLE=ESTs, Moderately similar to C45439 myosin-I, Myr 1b (R.norvegicus) AA859008 myosin Ib Myo1b 117057 NM_053986 0007399 // nervous system development // non-traceable author statement 0005856 // cytoskeleton // traceable author statement /// 0005903 // brush border // inferred from direct assay /// 0016459 // myosin complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1395486_at BF413851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413851 /DB_XREF=gi:11401840 /DB_XREF=UI-R-CA0-boj-d-08-0-UI.s1 /CLONE=UI-R-CA0-boj-d-08-0-UI /FEA=EST /CNT=5 /TID=Rn.53227.1 /TIER=ConsEnd /STK=0 /UG=Rn.53227 /UG_TITLE=ESTs, Highly similar to A56011 transcription factor IIIC alpha chain - rat (R.norvegicus) BF413851 general transcription factor IIIC, polypeptide 1, alpha Gtf3c1 171063 NM_133541 0006350 // transcription // inferred from electronic annotation 0000127 // transcription factor TFIIIC complex // inferred from direct assay /// 0000127 // transcription factor TFIIIC complex // not recorded /// 0000127 // transcription factor TFIIIC complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003709 // RNA polymerase III transcription factor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395487_at BF400826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400826 /DB_XREF=gi:11388766 /DB_XREF=UI-R-CA0-bhf-f-09-0-UI.s1 /CLONE=UI-R-CA0-bhf-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.48058.1 /TIER=ConsEnd /STK=0 /UG=Rn.48058 /UG_TITLE=ESTs BF400826 1395488_at BF390807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390807 /DB_XREF=gi:11375654 /DB_XREF=UI-R-CA1-bcp-f-08-0-UI.s1 /CLONE=UI-R-CA1-bcp-f-08-0-UI /FEA=EST /CNT=5 /TID=Rn.57283.1 /TIER=ConsEnd /STK=0 /UG=Rn.57283 /UG_TITLE=ESTs BF390807 mutS homolog 3 (E. coli) Msh3 499505 NM_001191957 /// XM_001065837 /// XM_574830 0006281 // DNA repair // not recorded /// 0006298 // mismatch repair // inferred from electronic annotation /// 0006298 // mismatch repair // not recorded /// 0016446 // somatic hypermutation of immunoglobulin genes // not recorded /// 0016447 // somatic recombination of immunoglobulin gene segments // not recorded /// 0043570 // maintenance of DNA repeat elements // not recorded /// 0045910 // negative regulation of DNA recombination // not recorded /// 0051096 // positive regulation of helicase activity // not recorded 0032302 // MutSbeta complex // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // not recorded /// 0003697 // single-stranded DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0019237 // centromeric DNA binding // not recorded /// 0019899 // enzyme binding // not recorded /// 0030983 // mismatched DNA binding // inferred from electronic annotation /// 0030983 // mismatched DNA binding // not recorded /// 0032137 // guanine/thymine mispair binding // not recorded /// 0032139 // dinucleotide insertion or deletion binding // not recorded /// 0032142 // single guanine insertion binding // not recorded /// 0032181 // dinucleotide repeat insertion binding // not recorded /// 0032357 // oxidized purine DNA binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1395489_at BF387055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387055 /DB_XREF=gi:11371879 /DB_XREF=UI-R-CA1-bbp-f-12-0-UI.s1 /CLONE=UI-R-CA1-bbp-f-12-0-UI /FEA=EST /CNT=5 /TID=Rn.62082.1 /TIER=ConsEnd /STK=0 /UG=Rn.62082 /UG_TITLE=ESTs BF387055 ankyrin repeat domain 13 family, member D Ankrd13d 361699 NM_001108514 1395490_at BF409918 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409918 /DB_XREF=gi:11397893 /DB_XREF=UI-R-CA1-bjy-c-12-0-UI.s1 /CLONE=UI-R-CA1-bjy-c-12-0-UI /FEA=EST /CNT=5 /TID=Rn.62933.1 /TIER=ConsEnd /STK=0 /UG=Rn.62933 /UG_TITLE=ESTs BF409918 1395491_at BF409377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409377 /DB_XREF=gi:11397393 /DB_XREF=UI-R-CA1-blf-g-11-0-UI.s1 /CLONE=UI-R-CA1-blf-g-11-0-UI /FEA=EST /CNT=5 /TID=Rn.51835.1 /TIER=ConsEnd /STK=0 /UG=Rn.51835 /UG_TITLE=ESTs BF409377 1395492_at BF406131 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406131 /DB_XREF=gi:11394106 /DB_XREF=UI-R-CA1-bjf-c-03-0-UI.s1 /CLONE=UI-R-CA1-bjf-c-03-0-UI /FEA=EST /CNT=5 /TID=Rn.57900.1 /TIER=ConsEnd /STK=0 /UG=Rn.57900 /UG_TITLE=ESTs, Weakly similar to ZK930.2.p (Caenorhabditis elegans) (C.elegans) BF406131 Zinc finger, C4H2 domain containing Zc4h2 367838 NM_001126374 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395493_at BF411119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411119 /DB_XREF=gi:11399094 /DB_XREF=UI-R-BT1-bmm-a-11-0-UI.s1 /CLONE=UI-R-BT1-bmm-a-11-0-UI /FEA=EST /CNT=5 /TID=Rn.61802.1 /TIER=ConsEnd /STK=0 /UG=Rn.61802 /UG_TITLE=ESTs BF411119 hypothetical LOC296411 RGD1307805 296411 NM_001106548 1395494_at BF412343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412343 /DB_XREF=gi:11400332 /DB_XREF=UI-R-BT1-bnc-f-11-0-UI.s1 /CLONE=UI-R-BT1-bnc-f-11-0-UI /FEA=EST /CNT=5 /TID=Rn.62060.1 /TIER=ConsEnd /STK=0 /UG=Rn.62060 /UG_TITLE=ESTs BF412343 1395495_at BF416590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416590 /DB_XREF=gi:11404579 /DB_XREF=UI-R-CA1-bkt-d-11-0-UI.s1 /CLONE=UI-R-CA1-bkt-d-11-0-UI /FEA=EST /CNT=5 /TID=Rn.63079.1 /TIER=ConsEnd /STK=0 /UG=Rn.63079 /UG_TITLE=ESTs BF416590 1395496_at BF418038 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418038 /DB_XREF=gi:11405992 /DB_XREF=UI-R-CA1-blv-c-09-0-UI.s1 /CLONE=UI-R-CA1-blv-c-09-0-UI /FEA=EST /CNT=5 /TID=Rn.63321.1 /TIER=ConsEnd /STK=0 /UG=Rn.63321 /UG_TITLE=ESTs BF418038 1395497_at BF418066 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418066 /DB_XREF=gi:11406055 /DB_XREF=UI-R-CA0-blz-a-05-0-UI.s1 /CLONE=UI-R-CA0-blz-a-05-0-UI /FEA=EST /CNT=5 /TID=Rn.63353.1 /TIER=ConsEnd /STK=0 /UG=Rn.63353 /UG_TITLE=ESTs BF418066 cell division cycle associated 5 Cdca5 684771 NM_001115042 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0007067 // mitosis // not recorded /// 0007076 // mitotic chromosome condensation // not recorded /// 0007080 // mitotic metaphase plate congression // not recorded /// 0051329 // interphase of mitotic cell cycle // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0008278 // cohesin complex // not recorded 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1395498_at BF413410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413410 /DB_XREF=gi:11401399 /DB_XREF=UI-R-CA0-boe-g-07-0-UI.s1 /CLONE=UI-R-CA0-boe-g-07-0-UI /FEA=EST /CNT=5 /TID=Rn.63514.1 /TIER=ConsEnd /STK=0 /UG=Rn.63514 /UG_TITLE=ESTs, Highly similar to Skb1Hs (H.sapiens) BF413410 1395499_at BF392443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392443 /DB_XREF=gi:11377300 /DB_XREF=UI-R-CA0-bfj-c-07-0-UI.s1 /CLONE=UI-R-CA0-bfj-c-07-0-UI /FEA=EST /CNT=5 /TID=Rn.30310.1 /TIER=ConsEnd /STK=0 /UG=Rn.30310 /UG_TITLE=ESTs BF392443 epidermal growth factor receptor pathway substrate 8 Eps8 312812 XM_001072957 /// XM_232499 0008344 // adult locomotory behavior // not recorded /// 0031532 // actin cytoskeleton reorganization // not recorded /// 0048149 // behavioral response to ethanol // not recorded 0014069 // postsynaptic density // not recorded /// 0017146 // N-methyl-D-aspartate selective glutamate receptor complex // not recorded /// 0019717 // synaptosome // not recorded 0005515 // protein binding // not recorded 1395500_at BE119104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119104 /DB_XREF=gi:8511209 /DB_XREF=UI-R-CA0-azy-e-09-0-UI.s1 /CLONE=UI-R-CA0-azy-e-09-0-UI /FEA=EST /CNT=5 /TID=Rn.52259.1 /TIER=ConsEnd /STK=0 /UG=Rn.52259 /UG_TITLE=ESTs BE119104 TWIST neighbor Twistnb 362728 NM_001108707 0006350 // transcription // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation 1395501_at BE120578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120578 /DB_XREF=gi:8512683 /DB_XREF=UI-R-CA0-bav-b-09-0-UI.s1 /CLONE=UI-R-CA0-bav-b-09-0-UI /FEA=EST /CNT=5 /TID=Rn.53604.1 /TIER=ConsEnd /STK=0 /UG=Rn.53604 /UG_TITLE=ESTs BE120578 1395502_at BF557865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557865 /DB_XREF=gi:11667643 /DB_XREF=UI-R-C0-he-f-06-0-UI.r1 /CLONE=UI-R-C0-he-f-06-0-UI /FEA=EST /CNT=5 /TID=Rn.51235.1 /TIER=ConsEnd /STK=0 /UG=Rn.51235 /UG_TITLE=ESTs, Weakly similar to S47482 TEG-271 protein - mouse (M.musculus) BF557865 protein phosphatase 2, regulatory subunit B', delta isoform Ppp2r5d 363193 XM_001062510 /// XM_001065844 0007165 // signal transduction // inferred from electronic annotation 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008601 // protein phosphatase type 2A regulator activity // inferred from electronic annotation 1395503_at BF564382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564382 /DB_XREF=gi:11674112 /DB_XREF=UI-R-C4-alp-d-10-0-UI.r1 /CLONE=UI-R-C4-alp-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.48264.1 /TIER=ConsEnd /STK=0 /UG=Rn.48264 /UG_TITLE=ESTs BF564382 glutamyl-tRNA synthetase 2 mitochondrial (putative) Ears2 361641 NM_001159493 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006424 // glutamyl-tRNA aminoacylation // inferred from electronic annotation /// 0043039 // tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004818 // glutamate-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016876 // ligase activity, forming aminoacyl-tRNA and related compounds // inferred from electronic annotation 1395504_at BF408349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408349 /DB_XREF=gi:11396324 /DB_XREF=UI-R-BJ2-brb-g-07-0-UI.s1 /CLONE=UI-R-BJ2-brb-g-07-0-UI /FEA=EST /CNT=5 /TID=Rn.63754.1 /TIER=ConsEnd /STK=0 /UG=Rn.63754 /UG_TITLE=ESTs, Weakly similar to S60257 meltrin alpha - mouse (M.musculus) BF408349 a disintegrin and metallopeptidase domain 19 (meltrin beta) Adam19 303068 NM_001160228 0006508 // proteolysis // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0007507 // heart development // not recorded 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1395505_at AI229654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229654 /DB_XREF=gi:3813541 /DB_XREF=EST226349 /CLONE=REMCK05 /FEA=EST /CNT=5 /TID=Rn.34413.1 /TIER=ConsEnd /STK=0 /UG=Rn.34413 /UG_TITLE=ESTs AI229654 similar to DIP13 alpha RGD1309388 290537 XM_002725153 /// XM_002728373 1395506_at AW530922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530922 /DB_XREF=gi:7173336 /DB_XREF=UI-R-C4-alf-a-01-0-UI.s1 /CLONE=UI-R-C4-alf-a-01-0-UI /FEA=EST /CNT=5 /TID=Rn.35511.1 /TIER=ConsEnd /STK=0 /UG=Rn.35511 /UG_TITLE=ESTs AW530922 1395507_at BG378879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378879 /DB_XREF=gi:13303351 /DB_XREF=UI-R-CV1-bvt-h-10-0-UI.s1 /CLONE=UI-R-CV1-bvt-h-10-0-UI /FEA=EST /CNT=5 /TID=Rn.66607.1 /TIER=ConsEnd /STK=0 /UG=Rn.66607 /UG_TITLE=ESTs BG378879 1395508_at BG665309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665309 /DB_XREF=gi:13887231 /DB_XREF=DRACBB09 /CLONE=DRACBB09 /FEA=EST /CNT=8 /TID=Rn.32633.2 /TIER=ConsEnd /STK=0 /UG=Rn.32633 /UG_TITLE=ESTs, Weakly similar to T-COMPLEX PROTEIN 1, ALPHA SUBUNIT (R.norvegicus) BG665309 chaperonin containing Tcp1, subunit 5 (epsilon) Cct5 294864 NM_001004078 0006457 // protein folding // inferred from electronic annotation /// 0009615 // response to virus // inferred from electronic annotation /// 0009615 // response to virus // not recorded /// 0044267 // cellular protein metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005832 // chaperonin-containing T-complex // inferred from electronic annotation /// 0005832 // chaperonin-containing T-complex // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1395509_at BG666117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666117 /DB_XREF=gi:13888039 /DB_XREF=DRACPA04 /CLONE=DRACPA04 /FEA=EST /CNT=6 /TID=Rn.74155.1 /TIER=ConsEnd /STK=0 /UG=Rn.74155 /UG_TITLE=ESTs BG666117 1395510_at AW916573 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916573 /DB_XREF=gi:8082302 /DB_XREF=EST347877 /CLONE=RGIDR86 /FEA=EST /CNT=6 /TID=Rn.55872.1 /TIER=ConsEnd /STK=0 /UG=Rn.55872 /UG_TITLE=ESTs, Weakly similar to C44C1.5.p (Caenorhabditis elegans) (C.elegans) AW916573 abhydrolase domain containing 1 Abhd1 313917 NM_001008520 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1395511_at BF543472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543472 /DB_XREF=gi:11634579 /DB_XREF=UI-R-C3-sz-a-11-0-UI.r1 /CLONE=UI-R-C3-sz-a-11-0-UI /FEA=EST /CNT=6 /TID=Rn.64251.1 /TIER=ConsEnd /STK=0 /UG=Rn.64251 /UG_TITLE=ESTs BF543472 1395512_at AA866388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA866388 /DB_XREF=gi:4230568 /DB_XREF=UI-R-A0-aj-f-04-0-UI.s3 /CLONE=UI-R-A0-aj-f-04-0-UI /FEA=EST /CNT=6 /TID=Rn.38637.1 /TIER=ConsEnd /STK=0 /UG=Rn.38637 /UG_TITLE=ESTs, Weakly similar to A41070 prolactin receptor Nb2 precursor - rat (R.norvegicus) AA866388 cytokine receptor-like factor 1 Crlf1 290655 NM_001106074 0001657 // ureteric bud development // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0019955 // cytokine binding // not recorded 1395513_at BF554485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554485 /DB_XREF=gi:11664215 /DB_XREF=UI-R-E1-gf-f-12-0-UI.r1 /CLONE=UI-R-E1-gf-f-12-0-UI /FEA=EST /CNT=6 /TID=Rn.50139.1 /TIER=ConsEnd /STK=0 /UG=Rn.50139 /UG_TITLE=ESTs BF554485 LSM16 homolog (EDC3, S. cerevisiae) Lsm16 315708 XM_001072079 /// XM_002729908 1395514_at BI281277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281277 /DB_XREF=gi:14930846 /DB_XREF=UI-R-DA0-bzh-e-06-0-UI.s1 /CLONE=UI-R-DA0-bzh-e-06-0-UI /FEA=EST /CNT=5 /TID=Rn.41791.1 /TIER=ConsEnd /STK=0 /UG=Rn.41791 /UG_TITLE=ESTs BI281277 SCY1-like 3 (S. cerevisiae) Scyl3 360866 NM_001191828 /// XM_001075015 /// XM_341142 0006468 // protein phosphorylation // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0030027 // lamellipodium // not recorded 0004672 // protein kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded 1395515_at BG668905 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668905 /DB_XREF=gi:13890827 /DB_XREF=DRN03A04 /CLONE=DRN03A04 /FEA=EST /CNT=5 /TID=Rn.43108.1 /TIER=ConsEnd /STK=0 /UG=Rn.43108 /UG_TITLE=ESTs, Weakly similar to T00068 hypothetical protein KIAA0443 (H.sapiens) BG668905 basic helix-loop-helix domain containing, class B, 9 Bhlhb9 317407 NM_207611 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1395516_at BG663870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663870 /DB_XREF=gi:13885792 /DB_XREF=DRAAAOF09 /CLONE=DRAAAOF09 /FEA=EST /CNT=5 /TID=Rn.73073.1 /TIER=ConsEnd /STK=0 /UG=Rn.73073 /UG_TITLE=ESTs, Weakly similar to T30989 serinethreonine protein kinase NIK - mouse (M.musculus) BG663870 arginine and glutamate rich 1 Arglu1 290912 NM_001024972 1395517_at AW919690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919690 /DB_XREF=gi:8085489 /DB_XREF=EST350994 /CLONE=RGIGF69 /FEA=EST /CNT=5 /TID=Rn.32640.1 /TIER=ConsEnd /STK=0 /UG=Rn.32640 /UG_TITLE=ESTs, Weakly similar to ZYX MOUSE ZYXIN (M.musculus) AW919690 LIM domains containing 1 Limd1 316101 NM_001112737 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1395518_at BF544403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF544403 /DB_XREF=gi:11635510 /DB_XREF=UI-R-BT0-pu-h-06-0-UI.r1 /CLONE=UI-R-BT0-pu-h-06-0-UI /FEA=EST /CNT=5 /TID=Rn.45549.1 /TIER=ConsEnd /STK=0 /UG=Rn.45549 /UG_TITLE=ESTs BF544403 1395519_at BG670960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670960 /DB_XREF=gi:13893059 /DB_XREF=DRNBJD10 /CLONE=DRNBJD10 /FEA=EST /CNT=5 /TID=Rn.46794.1 /TIER=ConsEnd /STK=0 /UG=Rn.46794 /UG_TITLE=ESTs BG670960 similar to B230212L03Rik protein MGC95152 297109 NM_001007645 1395520_at AW530017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530017 /DB_XREF=gi:7172431 /DB_XREF=UI-R-BT1-akr-c-02-0-UI.s1 /CLONE=UI-R-BT1-akr-c-02-0-UI /FEA=EST /CNT=5 /TID=Rn.52528.1 /TIER=ConsEnd /STK=0 /UG=Rn.52528 /UG_TITLE=ESTs AW530017 RNA binding motif protein 28 Rbm28 312182 NM_001107850 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1395521_at BI299174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299174 /DB_XREF=gi:14975454 /DB_XREF=UI-R-CV2-chs-a-11-0-UI.s1 /CLONE=UI-R-CV2-chs-a-11-0-UI /FEA=EST /CNT=5 /TID=Rn.66237.1 /TIER=ConsEnd /STK=0 /UG=Rn.66237 /UG_TITLE=ESTs, Moderately similar to S33477 hypothetical protein 1 - rat (R.norvegicus) BI299174 1395522_at BF560823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF560823 /DB_XREF=gi:11670553 /DB_XREF=UI-R-C0-gw-f-05-0-UI.r1 /CLONE=UI-R-C0-gw-f-05-0-UI /FEA=EST /CNT=5 /TID=Rn.32554.1 /TIER=ConsEnd /STK=0 /UG=Rn.32554 /UG_TITLE=ESTs BF560823 1395523_at AW523475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523475 /DB_XREF=gi:7165860 /DB_XREF=UI-R-BO0-aho-f-02-0-UI.s1 /CLONE=UI-R-BO0-aho-f-02-0-UI /FEA=EST /CNT=5 /TID=Rn.46691.1 /TIER=ConsEnd /STK=0 /UG=Rn.46691 /UG_TITLE=ESTs AW523475 RNA binding motif protein, X-linked Rbmx 302855 NM_001025663 0006376 // mRNA splice site selection // inferred from mutant phenotype /// 0008380 // RNA splicing // not recorded /// 0045941 // positive regulation of transcription // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005681 // spliceosomal complex // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay 1395524_at AW525958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525958 /DB_XREF=gi:7168343 /DB_XREF=UI-R-BO1-aiw-f-10-0-UI.s1 /CLONE=UI-R-BO1-aiw-f-10-0-UI /FEA=EST /CNT=5 /TID=Rn.72791.1 /TIER=ConsEnd /STK=0 /UG=Rn.72791 /UG_TITLE=ESTs AW525958 1395525_at AW921946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921946 /DB_XREF=gi:8087770 /DB_XREF=EST353250 /CLONE=RGIIJ60 /FEA=EST /CNT=5 /TID=Rn.65172.1 /TIER=ConsEnd /STK=0 /UG=Rn.65172 /UG_TITLE=ESTs AW921946 WW and C2 domain containing 2 Wwc2 498630 NM_001109111 0005515 // protein binding // inferred from electronic annotation 1395526_at BE111618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111618 /DB_XREF=gi:8503723 /DB_XREF=UI-R-BJ1-avc-h-06-0-UI.s1 /CLONE=UI-R-BJ1-avc-h-06-0-UI /FEA=EST /CNT=5 /TID=Rn.66510.1 /TIER=ConsEnd /STK=0 /UG=Rn.66510 /UG_TITLE=ESTs BE111618 mitochondrial ribosomal protein L10 Mrpl10 691075 NM_001109620 0006412 // translation // inferred from sequence or structural similarity /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005762 // mitochondrial large ribosomal subunit // inferred from sequence or structural similarity /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity 1395527_at AW534755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534755 /DB_XREF=gi:7177169 /DB_XREF=UI-R-BS0-anv-f-12-0-UI.s1 /CLONE=UI-R-BS0-anv-f-12-0-UI /FEA=EST /CNT=5 /TID=Rn.28908.1 /TIER=ConsEnd /STK=0 /UG=Rn.28908 /UG_TITLE=ESTs AW534755 similar to a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 10 LOC314655 314655 NM_001034930 0006508 // proteolysis // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395528_at BE120964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120964 /DB_XREF=gi:8513069 /DB_XREF=UI-R-CA0-baf-e-08-0-UI.s1 /CLONE=UI-R-CA0-baf-e-08-0-UI /FEA=EST /CNT=5 /TID=Rn.49063.1 /TIER=ConsEnd /STK=0 /UG=Rn.49063 /UG_TITLE=ESTs BE120964 1395529_at BF286905 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF286905 /DB_XREF=gi:11217975 /DB_XREF=EST451496 /CLONE=RGIFU33 /FEA=EST /CNT=5 /TID=Rn.56099.1 /TIER=ConsEnd /STK=0 /UG=Rn.56099 /UG_TITLE=ESTs BF286905 microRNA mir-144 /// microRNA mir-451 Mir144 /// Mir451 100314070 /// 100314192 NR_031890 /// NR_031955 1395530_at AI555739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555739 /DB_XREF=gi:4488102 /DB_XREF=UI-R-C2p-qr-h-12-0-UI.s1 /CLONE=UI-R-C2p-qr-h-12-0-UI /FEA=EST /CNT=5 /TID=Rn.35750.1 /TIER=ConsEnd /STK=0 /UG=Rn.35750 /UG_TITLE=ESTs AI555739 1395531_at AW251707 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251707 /DB_XREF=gi:6595298 /DB_XREF=UI-R-BJ0-adp-h-11-0-UI.s1 /CLONE=UI-R-BJ0-adp-h-11-0-UI /FEA=EST /CNT=5 /TID=Rn.19463.1 /TIER=ConsEnd /STK=0 /UG=Rn.19463 /UG_TITLE=ESTs AW251707 centrosomal protein 76kDa Cep76 291540 NM_001100514 0046599 // regulation of centriole replication // inferred from electronic annotation /// 0046599 // regulation of centriole replication // not recorded 0005814 // centriole // inferred from electronic annotation /// 0005814 // centriole // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395532_at AI137456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137456 /DB_XREF=gi:3638233 /DB_XREF=UI-R-C2p-ol-b-07-0-UI.s1 /CLONE=UI-R-C2p-ol-b-07-0-UI /FEA=EST /CNT=5 /TID=Rn.40428.1 /TIER=ConsEnd /STK=0 /UG=Rn.40428 /UG_TITLE=ESTs AI137456 1395533_at BF552813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552813 /DB_XREF=gi:11662543 /DB_XREF=UI-R-C2-nm-a-06-0-UI.r1 /CLONE=UI-R-C2-nm-a-06-0-UI /FEA=EST /CNT=5 /TID=Rn.23524.1 /TIER=ConsEnd /STK=0 /UG=Rn.23524 /UG_TITLE=ESTs, Highly similar to SYH MOUSE HISTIDYL-TRNA SYNTHETASE (M.musculus) BF552813 histidyl-tRNA synthetase Hars 307492 NM_001025414 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006427 // histidyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004821 // histidine-tRNA ligase activity // inferred from electronic annotation /// 0004821 // histidine-tRNA ligase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1395534_at AW919370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919370 /DB_XREF=gi:8085164 /DB_XREF=EST350674 /CLONE=RGIFT60 /FEA=EST /CNT=5 /TID=Rn.43660.1 /TIER=ConsEnd /STK=0 /UG=Rn.43660 /UG_TITLE=ESTs AW919370 RAS-like, family 10, member B Rasl10b 303382 NM_001191648 /// XM_001081057 /// XM_002727785 /// XM_220782 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1395535_at BF548555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548555 /DB_XREF=gi:11639662 /DB_XREF=UI-R-A0-au-b-03-0-UI.r1 /CLONE=UI-R-A0-au-b-03-0-UI /FEA=EST /CNT=5 /TID=Rn.32273.1 /TIER=ConsEnd /STK=0 /UG=Rn.32273 /UG_TITLE=ESTs BF548555 family with sequence similarity 98, member A Fam98a 313873 NM_001014073 1395536_at BG673248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG673248 /DB_XREF=gi:13895347 /DB_XREF=DRNBRA04 /CLONE=DRNBRA04 /FEA=EST /CNT=4 /TID=Rn.81662.1 /TIER=ConsEnd /STK=0 /UG=Rn.81662 /UG_TITLE=ESTs BG673248 1395537_at BF523835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523835 /DB_XREF=gi:11631802 /DB_XREF=UI-R-Y0-acg-c-05-0-UI.r1 /CLONE=UI-R-Y0-acg-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.79157.1 /TIER=ConsEnd /STK=0 /UG=Rn.79157 /UG_TITLE=ESTs BF523835 similar to putative protein, with at least 9 transmembrane domains, of eukaryotic origin (43.9 kD) (2G415) RGD1309228 298851 NM_001017451 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1395538_at BF555228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555228 /DB_XREF=gi:11664958 /DB_XREF=UI-R-A0-bi-c-07-0-UI.r1 /CLONE=UI-R-A0-bi-c-07-0-UI /FEA=EST /CNT=4 /TID=Rn.45577.1 /TIER=ConsEnd /STK=0 /UG=Rn.45577 /UG_TITLE=ESTs BF555228 phosphodiesterase 12 Pde12 306231 NM_001013998 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0016787 // hydrolase activity // inferred from electronic annotation 1395539_at AW523902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523902 /DB_XREF=gi:7166287 /DB_XREF=UI-R-BO0-aie-c-11-0-UI.s1 /CLONE=UI-R-BO0-aie-c-11-0-UI /FEA=EST /CNT=4 /TID=Rn.33825.1 /TIER=ConsEnd /STK=0 /UG=Rn.33825 /UG_TITLE=ESTs AW523902 1395540_at AW144387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144387 /DB_XREF=gi:6164286 /DB_XREF=EST294683 /CLONE=RGICR37 /FEA=EST /CNT=4 /TID=Rn.72702.1 /TIER=ConsEnd /STK=0 /UG=Rn.72702 /UG_TITLE=ESTs AW144387 solute carrier family 35, member E3 Slc35e3 362883 NM_001134687 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1395541_at BF568017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF568017 /DB_XREF=gi:11677747 /DB_XREF=UI-R-BO0-ahy-b-01-0-UI.r1 /CLONE=UI-R-BO0-ahy-b-01-0-UI /FEA=EST /CNT=4 /TID=Rn.49120.1 /TIER=ConsEnd /STK=0 /UG=Rn.49120 /UG_TITLE=ESTs BF568017 1395542_at BF549929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549929 /DB_XREF=gi:11659659 /DB_XREF=UI-R-E0-bv-d-11-0-UI.r1 /CLONE=UI-R-E0-bv-d-11-0-UI /FEA=EST /CNT=4 /TID=Rn.76730.1 /TIER=ConsEnd /STK=0 /UG=Rn.76730 /UG_TITLE=ESTs BF549929 1395543_at BG669493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669493 /DB_XREF=gi:13891415 /DB_XREF=DRNAAG07 /CLONE=DRNAAG07 /FEA=EST /CNT=4 /TID=Rn.41509.1 /TIER=ConsEnd /STK=0 /UG=Rn.41509 /UG_TITLE=ESTs BG669493 1395544_at BG666601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666601 /DB_XREF=gi:13888523 /DB_XREF=DRABPD07 /CLONE=DRABPD07 /FEA=EST /CNT=4 /TID=Rn.54310.1 /TIER=ConsEnd /STK=0 /UG=Rn.54310 /UG_TITLE=ESTs BG666601 1395545_at BF284554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284554 /DB_XREF=gi:11215624 /DB_XREF=EST449145 /CLONE=RGIES15 /FEA=EST /CNT=4 /TID=Rn.55274.1 /TIER=ConsEnd /STK=0 /UG=Rn.55274 /UG_TITLE=ESTs BF284554 1395546_at AW529685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529685 /DB_XREF=gi:7172099 /DB_XREF=UI-R-BU0-amr-b-06-0-UI.s1 /CLONE=UI-R-BU0-amr-b-06-0-UI /FEA=EST /CNT=4 /TID=Rn.47284.1 /TIER=ConsEnd /STK=0 /UG=Rn.47284 /UG_TITLE=ESTs AW529685 1395547_at BG669143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669143 /DB_XREF=gi:13891050 /DB_XREF=DRN05H06 /CLONE=DRN05H06 /FEA=EST /CNT=4 /TID=Rn.28025.1 /TIER=ConsEnd /STK=0 /UG=Rn.28025 /UG_TITLE=ESTs BG669143 1395548_at BG666506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666506 /DB_XREF=gi:13888428 /DB_XREF=DRAADD03 /CLONE=DRAADD03 /FEA=EST /CNT=4 /TID=Rn.52437.1 /TIER=ConsEnd /STK=0 /UG=Rn.52437 /UG_TITLE=ESTs BG666506 1395549_at BF402983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402983 /DB_XREF=gi:11390958 /DB_XREF=UI-R-CA0-bhl-a-11-0-UI.s1 /CLONE=UI-R-CA0-bhl-a-11-0-UI /FEA=EST /CNT=4 /TID=Rn.58042.1 /TIER=ConsEnd /STK=0 /UG=Rn.58042 /UG_TITLE=ESTs BF402983 1395550_at BE098003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098003 /DB_XREF=gi:8488897 /DB_XREF=UI-R-C4-amc-c-01-0-UI.s1 /CLONE=UI-R-C4-amc-c-01-0-UI /FEA=EST /CNT=4 /TID=Rn.41397.1 /TIER=ConsEnd /STK=0 /UG=Rn.41397 /UG_TITLE=ESTs, Weakly similar to FBL5_RAT FIBULIN-5 PRECURSOR (FIBL-5) (DEVELOPMENTAL ARTERIES AND NEURAL CREST EGF-LIKE PROTEIN) (DANCE) (EMBRYONIC VASCULAR EGF REPEAT-CONTAINING PROTEIN) (EVEC) (R.norvegicus) BE098003 similar to collagen and calcium binding EGF domains 1 RGD1565629 307358 XM_225862 1395551_at BG671371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671371 /DB_XREF=gi:13893470 /DB_XREF=DRNBQA11 /CLONE=DRNBQA11 /FEA=EST /CNT=4 /TID=Rn.76806.1 /TIER=ConsEnd /STK=0 /UG=Rn.76806 /UG_TITLE=ESTs BG671371 ankyrin repeat domain 13C Ankrd13c 685374 NM_001191570 /// XM_001062165 /// XM_002726058 /// XM_002729125 0005783 // endoplasmic reticulum // not recorded 1395552_s_at BG671371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671371 /DB_XREF=gi:13893470 /DB_XREF=DRNBQA11 /CLONE=DRNBQA11 /FEA=EST /CNT=4 /TID=Rn.76806.1 /TIER=ConsEnd /STK=0 /UG=Rn.76806 /UG_TITLE=ESTs BG671371 ankyrin repeat domain 13C Ankrd13c 685374 NM_001191570 /// XM_001062165 /// XM_002726058 /// XM_002729125 0005783 // endoplasmic reticulum // not recorded 1395553_at BG672614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672614 /DB_XREF=gi:13894713 /DB_XREF=DRNCNC06 /CLONE=DRNCNC06 /FEA=EST /CNT=4 /TID=Rn.55484.1 /TIER=ConsEnd /STK=0 /UG=Rn.55484 /UG_TITLE=ESTs, Moderately similar to Zfp68 gene (M.musculus) BG672614 zinc finger protein 68 Zfp68 304337 NM_001107128 /// NM_001142945 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395554_at BF405684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405684 /DB_XREF=gi:11393659 /DB_XREF=UI-R-CA1-biv-f-06-0-UI.s1 /CLONE=UI-R-CA1-biv-f-06-0-UI /FEA=EST /CNT=4 /TID=Rn.33262.1 /TIER=ConsEnd /STK=0 /UG=Rn.33262 /UG_TITLE=ESTs, Highly similar to RAF PROTO-ONCOGENE SERINETHREONINE-PROTEIN KINASE (R.norvegicus) BF405684 1395555_at AW916706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916706 /DB_XREF=gi:8082438 /DB_XREF=EST348010 /CLONE=RGIDT74 /FEA=EST /CNT=4 /TID=Rn.41020.1 /TIER=ConsEnd /STK=0 /UG=Rn.41020 /UG_TITLE=ESTs AW916706 golgi SNAP receptor complex member 1 Gosr1 94189 NM_053584 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0000139 // Golgi membrane // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005801 // cis-Golgi network // inferred from direct assay /// 0005801 // cis-Golgi network // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005484 // SNAP receptor activity // not recorded 1395556_at BF562964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562964 /DB_XREF=gi:11672694 /DB_XREF=UI-R-BO0-aih-c-06-0-UI.r1 /CLONE=UI-R-BO0-aih-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.26998.1 /TIER=ConsEnd /STK=0 /UG=Rn.26998 /UG_TITLE=ESTs BF562964 family with sequence similarity 168, member B /// similar to Protein KIAA0280 Fam168b /// LOC503175 503175 /// 690188 XM_001073605 /// XM_002727216 /// XM_578699 1395557_at BF565718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565718 /DB_XREF=gi:11675448 /DB_XREF=UI-R-BO1-ajp-d-02-0-UI.r1 /CLONE=UI-R-BO1-ajp-d-02-0-UI /FEA=EST /CNT=4 /TID=Rn.20790.1 /TIER=ConsEnd /STK=0 /UG=Rn.20790 /UG_TITLE=ESTs BF565718 1395558_at BF401410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401410 /DB_XREF=gi:11389385 /DB_XREF=UI-R-CA0-bgt-c-11-0-UI.s1 /CLONE=UI-R-CA0-bgt-c-11-0-UI /FEA=EST /CNT=4 /TID=Rn.42992.1 /TIER=ConsEnd /STK=0 /UG=Rn.42992 /UG_TITLE=ESTs BF401410 1395559_at BF543323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543323 /DB_XREF=gi:11634430 /DB_XREF=UI-R-Y0-abe-d-08-0-UI.r1 /CLONE=UI-R-Y0-abe-d-08-0-UI /FEA=EST /CNT=4 /TID=Rn.39294.1 /TIER=ConsEnd /STK=0 /UG=Rn.39294 /UG_TITLE=ESTs BF543323 1395560_at BF522151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522151 /DB_XREF=gi:11630118 /DB_XREF=UI-R-A0-be-h-07-0-UI.r1 /CLONE=UI-R-A0-be-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.63752.1 /TIER=ConsEnd /STK=0 /UG=Rn.63752 /UG_TITLE=ESTs BF522151 1395561_at BG666358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666358 /DB_XREF=gi:13888280 /DB_XREF=DRACHD11 /CLONE=DRACHD11 /FEA=EST /CNT=4 /TID=Rn.35911.1 /TIER=ConsEnd /STK=0 /UG=Rn.35911 /UG_TITLE=ESTs, Weakly similar to DDRT helix-destabilizing protein - rat (R.norvegicus) BG666358 heterogeneous nuclear ribonucleoprotein A2/B1 Hnrnpa2b1 362361 NM_001104613 0006397 // mRNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // not recorded /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0050658 // RNA transport // inferred from electronic annotation /// 0050658 // RNA transport // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030530 // heterogeneous nuclear ribonucleoprotein complex // inferred from electronic annotation /// 0030530 // heterogeneous nuclear ribonucleoprotein complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043047 // single-stranded telomeric DNA binding // inferred from electronic annotation /// 0043047 // single-stranded telomeric DNA binding // not recorded 1395562_at AW524172 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524172 /DB_XREF=gi:7166557 /DB_XREF=UI-R-BO0-aii-c-09-0-UI.s1 /CLONE=UI-R-BO0-aii-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.45631.1 /TIER=ConsEnd /STK=0 /UG=Rn.45631 /UG_TITLE=ESTs AW524172 1395563_at AA875586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875586 /DB_XREF=gi:4231465 /DB_XREF=UI-R-E0-cv-a-01-0-UI.s1 /CLONE=UI-R-E0-cv-a-01-0-UI /FEA=EST /CNT=4 /TID=Rn.32249.1 /TIER=ConsEnd /STK=0 /UG=Rn.32249 /UG_TITLE=ESTs AA875586 1395564_at AI575513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575513 /DB_XREF=gi:4559889 /DB_XREF=UI-R-Y0-ve-g-05-0-UI.s1 /CLONE=UI-R-Y0-ve-g-05-0-UI /FEA=EST /CNT=4 /TID=Rn.41215.1 /TIER=ConsEnd /STK=0 /UG=Rn.41215 /UG_TITLE=ESTs AI575513 1395565_at BG669198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669198 /DB_XREF=gi:13891105 /DB_XREF=DRN1A08 /CLONE=DRN1A08 /FEA=EST /CNT=4 /TID=Rn.53624.1 /TIER=ConsEnd /STK=0 /UG=Rn.53624 /UG_TITLE=ESTs BG669198 COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis) Cops4 360915 NM_001004275 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0008180 // signalosome // inferred from electronic annotation /// 0008180 // signalosome // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395566_at AW524204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524204 /DB_XREF=gi:7166589 /DB_XREF=UI-R-BO0-aii-f-07-0-UI.s1 /CLONE=UI-R-BO0-aii-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.23158.1 /TIER=ConsEnd /STK=0 /UG=Rn.23158 /UG_TITLE=ESTs AW524204 1395567_at BF287710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287710 /DB_XREF=gi:11218780 /DB_XREF=EST452301 /CLONE=RGIGI96 /FEA=EST /CNT=4 /TID=Rn.53145.1 /TIER=ConsEnd /STK=0 /UG=Rn.53145 /UG_TITLE=ESTs BF287710 1395568_at BF398797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398797 /DB_XREF=gi:11383798 /DB_XREF=UI-R-CA1-biz-e-01-0-UI.s1 /CLONE=UI-R-CA1-biz-e-01-0-UI /FEA=EST /CNT=4 /TID=Rn.35005.1 /TIER=ConsEnd /STK=0 /UG=Rn.35005 /UG_TITLE=ESTs BF398797 1395569_at BF282778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282778 /DB_XREF=gi:11213848 /DB_XREF=EST447369 /CLONE=RGIDS94 /FEA=EST /CNT=4 /TID=Rn.55984.1 /TIER=ConsEnd /STK=0 /UG=Rn.55984 /UG_TITLE=ESTs BF282778 1395570_at BF548061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548061 /DB_XREF=gi:11639168 /DB_XREF=UI-R-A0-bh-f-08-0-UI.r1 /CLONE=UI-R-A0-bh-f-08-0-UI /FEA=EST /CNT=4 /TID=Rn.63922.1 /TIER=ConsEnd /STK=0 /UG=Rn.63922 /UG_TITLE=ESTs BF548061 1395571_at BF557189 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557189 /DB_XREF=gi:11666919 /DB_XREF=UI-R-E1-ga-e-07-0-UI.r1 /CLONE=UI-R-E1-ga-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.32563.1 /TIER=ConsEnd /STK=0 /UG=Rn.32563 /UG_TITLE=ESTs, Weakly similar to JC4296 ring finger protein - fruit fly (D.melanogaster) BF557189 polycomb group ring finger 3 Pcgf3 305624 NM_001107245 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395572_at BF565278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565278 /DB_XREF=gi:11675008 /DB_XREF=UI-R-BO1-ajk-a-05-0-UI.r1 /CLONE=UI-R-BO1-ajk-a-05-0-UI /FEA=EST /CNT=4 /TID=Rn.44879.1 /TIER=ConsEnd /STK=0 /UG=Rn.44879 /UG_TITLE=ESTs, Moderately similar to HS44 MOUSE HEAT SHOCK 40 KDA PROTEIN 4 (R.norvegicus) BF565278 DnaJ (Hsp40) homolog, subfamily A, member 4 Dnaja4 300721 NM_001025411 0006457 // protein folding // inferred from electronic annotation /// 0009408 // response to heat // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1395573_at BF287254 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287254 /DB_XREF=gi:11218310 /DB_XREF=EST451831 /CLONE=RGIGD47 /FEA=EST /CNT=4 /TID=Rn.55424.1 /TIER=ConsEnd /STK=0 /UG=Rn.55424 /UG_TITLE=ESTs, Weakly similar to A60716 somatotropin intron-related protein RDE.25 - rat (R.norvegicus) BF287254 1395574_at BE118358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118358 /DB_XREF=gi:8510463 /DB_XREF=UI-R-BS1-azk-g-02-0-UI.s1 /CLONE=UI-R-BS1-azk-g-02-0-UI /FEA=EST /CNT=4 /TID=Rn.51103.1 /TIER=ConsEnd /STK=0 /UG=Rn.51103 /UG_TITLE=ESTs BE118358 1395575_at AW144668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144668 /DB_XREF=gi:6164567 /DB_XREF=EST295046 /CLONE=RGICC77 /FEA=EST /CNT=4 /TID=Rn.34422.1 /TIER=ConsEnd /STK=0 /UG=Rn.34422 /UG_TITLE=ESTs AW144668 1395576_at BI295834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295834 /DB_XREF=gi:14959678 /DB_XREF=UI-R-DK0-cfb-b-12-0-UI.s1 /CLONE=UI-R-DK0-cfb-b-12-0-UI /FEA=EST /CNT=4 /TID=Rn.46627.1 /TIER=ConsEnd /STK=0 /UG=Rn.46627 /UG_TITLE=ESTs BI295834 1395577_at AA800508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800508 /DB_XREF=gi:2863463 /DB_XREF=EST190005 /CLONE=RLUAB04 /FEA=EST /CNT=4 /TID=Rn.47538.1 /TIER=ConsEnd /STK=0 /UG=Rn.47538 /UG_TITLE=ESTs AA800508 1395578_at BF419340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419340 /DB_XREF=gi:11407329 /DB_XREF=UI-R-BJ2-bqq-d-12-0-UI.s1 /CLONE=UI-R-BJ2-bqq-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.27883.1 /TIER=ConsEnd /STK=0 /UG=Rn.27883 /UG_TITLE=ESTs BF419340 1395579_at BG666347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666347 /DB_XREF=gi:13888269 /DB_XREF=DRACHC08 /CLONE=DRACHC08 /FEA=EST /CNT=4 /TID=Rn.37753.1 /TIER=ConsEnd /STK=0 /UG=Rn.37753 /UG_TITLE=ESTs, Weakly similar to DD15 MOUSE PUTATIVE PRE-MRNA SPLICING FACTOR RNA HELICASE (M.musculus) BG666347 DEAH (Asp-Glu-Ala-His) box polypeptide 32 Dhx32 361667 NM_001130039 0004386 // helicase activity // inferred from electronic annotation 1395580_at BF546317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546317 /DB_XREF=gi:11637424 /DB_XREF=UI-R-C2p-rj-e-08-0-UI.r1 /CLONE=UI-R-C2p-rj-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.40335.1 /TIER=ConsEnd /STK=0 /UG=Rn.40335 /UG_TITLE=ESTs, Weakly similar to INTEGRIN ALPHA-1 PRECURSOR (R.norvegicus) BF546317 collagen, type XII, alpha 1 Col12a1 25683 XM_001060689 /// XM_243912 0007155 // cell adhesion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005595 // collagen type XII // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // traceable author statement 1395581_at BF389197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389197 /DB_XREF=gi:11374027 /DB_XREF=UI-R-BS2-bdl-h-08-0-UI.s1 /CLONE=UI-R-BS2-bdl-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.58789.1 /TIER=ConsEnd /STK=0 /UG=Rn.58789 /UG_TITLE=ESTs BF389197 1395582_at BF398623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398623 /DB_XREF=gi:11383618 /DB_XREF=UI-R-BS2-ber-a-01-0-UI.s1 /CLONE=UI-R-BS2-ber-a-01-0-UI /FEA=EST /CNT=4 /TID=Rn.44041.1 /TIER=ConsEnd /STK=0 /UG=Rn.44041 /UG_TITLE=ESTs BF398623 1395583_at BG664001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664001 /DB_XREF=gi:13885923 /DB_XREF=DRAABD09 /CLONE=DRAABD09 /FEA=EST /CNT=4 /TID=Rn.51553.1 /TIER=ConsEnd /STK=0 /UG=Rn.51553 /UG_TITLE=ESTs BG664001 1395584_at C06826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:C06826 /DB_XREF=gi:1503602 /DB_XREF=C06826 /FEA=EST /CNT=4 /TID=Rn.73695.1 /TIER=ConsEnd /STK=0 /UG=Rn.73695 /UG_TITLE=ESTs C06826 zinc finger CCCH-type containing 11A Zc3h11a 360845 NM_001047902 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395585_at BG375111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375111 /DB_XREF=gi:13299583 /DB_XREF=UI-R-CV1-bsx-c-03-0-UI.s1 /CLONE=UI-R-CV1-bsx-c-03-0-UI /FEA=EST /CNT=4 /TID=Rn.66287.1 /TIER=ConsEnd /STK=0 /UG=Rn.66287 /UG_TITLE=ESTs BG375111 1395586_at BF545930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545930 /DB_XREF=gi:11637037 /DB_XREF=UI-R-BT0-qg-a-06-0-UI.r1 /CLONE=UI-R-BT0-qg-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.48474.1 /TIER=ConsEnd /STK=0 /UG=Rn.48474 /UG_TITLE=ESTs BF545930 1395587_at BF389646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389646 /DB_XREF=gi:11374481 /DB_XREF=UI-R-BS2-bdn-b-03-0-UI.s1 /CLONE=UI-R-BS2-bdn-b-03-0-UI /FEA=EST /CNT=4 /TID=Rn.55789.1 /TIER=ConsEnd /STK=0 /UG=Rn.55789 /UG_TITLE=ESTs BF389646 1395588_at AI715259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715259 /DB_XREF=gi:5032512 /DB_XREF=UI-R-Y0-abp-c-06-0-UI.s1 /CLONE=UI-R-Y0-abp-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.40892.1 /TIER=ConsEnd /STK=0 /UG=Rn.40892 /UG_TITLE=ESTs AI715259 1395589_at AW141832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141832 /DB_XREF=gi:6161687 /DB_XREF=EST291943 /CLONE=RGICJ78 /FEA=EST /CNT=4 /TID=Rn.44982.1 /TIER=ConsEnd /STK=0 /UG=Rn.44982 /UG_TITLE=ESTs, Weakly similar to UGAT_MOUSE UDP-GALACTOSE TRANSLOCATOR (UDP-GALACTOSE TRANSPORTER) (UGT) (UDP-GAL-TR) (MUGT1) (M.musculus) AW141832 solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 Slc35a3 310808 NM_001012082 0006810 // transport // inferred from electronic annotation /// 0008643 // carbohydrate transport // inferred from electronic annotation /// 0015780 // nucleotide-sugar transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005338 // nucleotide-sugar transmembrane transporter activity // inferred from electronic annotation /// 0005351 // sugar:hydrogen symporter activity // inferred from electronic annotation 1395590_at BF391746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391746 /DB_XREF=gi:11376600 /DB_XREF=UI-R-CA1-bct-h-11-0-UI.s1 /CLONE=UI-R-CA1-bct-h-11-0-UI /FEA=EST /CNT=4 /TID=Rn.33710.1 /TIER=ConsEnd /STK=0 /UG=Rn.33710 /UG_TITLE=ESTs BF391746 Hypothetical protein LOC689329 LOC689329 689329 1395591_at BF416502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416502 /DB_XREF=gi:11404491 /DB_XREF=UI-R-CA0-bkk-d-08-0-UI.s1 /CLONE=UI-R-CA0-bkk-d-08-0-UI /FEA=EST /CNT=4 /TID=Rn.49108.1 /TIER=ConsEnd /STK=0 /UG=Rn.49108 /UG_TITLE=ESTs BF416502 1395592_at AA957981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957981 /DB_XREF=gi:4277871 /DB_XREF=UI-R-E1-gc-e-05-0-UI.s1 /CLONE=UI-R-E1-gc-e-05-0-UI /FEA=EST /CNT=4 /TID=Rn.55334.1 /TIER=ConsEnd /STK=0 /UG=Rn.55334 /UG_TITLE=ESTs AA957981 1395593_at BI275754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275754 /DB_XREF=gi:14919977 /DB_XREF=UI-R-CX0-bxg-c-06-0-UI.s1 /CLONE=UI-R-CX0-bxg-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.29283.1 /TIER=ConsEnd /STK=0 /UG=Rn.29283 /UG_TITLE=ESTs BI275754 1395594_at AW526032 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526032 /DB_XREF=gi:7168417 /DB_XREF=UI-R-BO1-aiy-e-03-0-UI.s1 /CLONE=UI-R-BO1-aiy-e-03-0-UI /FEA=EST /CNT=4 /TID=Rn.41280.1 /TIER=ConsEnd /STK=0 /UG=Rn.41280 /UG_TITLE=ESTs, Weakly similar to wingless-type MMTV integration site family, member 4 (Rattus norvegicus) (R.norvegicus) AW526032 wingless-type MMTV integration site family, member 11 Wnt11 140584 NM_080401 0001649 // osteoblast differentiation // not recorded /// 0003151 // outflow tract morphogenesis // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0007223 // Wnt receptor signaling pathway, calcium modulating pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0030154 // cell differentiation // inferred from expression pattern /// 0030282 // bone mineralization // not recorded /// 0030308 // negative regulation of cell growth // not recorded /// 0030325 // adrenal gland development // not recorded /// 0030335 // positive regulation of cell migration // not recorded /// 0030336 // negative regulation of cell migration // not recorded /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032320 // positive regulation of Ras GTPase activity // not recorded /// 0032915 // positive regulation of transforming growth factor-beta2 production // not recorded /// 0034394 // protein localization at cell surface // not recorded /// 0035567 // non-canonical Wnt receptor signaling pathway // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0048706 // embryonic skeletal system development // not recorded /// 0048844 // artery morphogenesis // not recorded /// 0051496 // positive regulation of stress fiber assembly // not recorded /// 0060021 // palate development // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060197 // cloacal septation // not recorded /// 0060412 // ventricular septum morphogenesis // not recorded /// 0060484 // lung-associated mesenchyme development // not recorded /// 0060548 // negative regulation of cell death // not recorded /// 0060675 // ureteric bud morphogenesis // not recorded /// 0061101 // neuroendocrine cell differentiation // not recorded /// 0070830 // tight junction assembly // not recorded /// 0072177 // mesonephric duct development // not recorded /// 0072201 // negative regulation of mesenchymal cell proliferation // not recorded /// 0090037 // positive regulation of protein kinase C signaling cascade // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded /// 0090272 // negative regulation of fibroblast growth factor production // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0031012 // extracellular matrix // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0005099 // Ras GTPase activator activity // not recorded /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0030295 // protein kinase activator activity // not recorded 1395595_at BG667615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667615 /DB_XREF=gi:13889537 /DB_XREF=DRABFG07 /CLONE=DRABFG07 /FEA=EST /CNT=4 /TID=Rn.32790.1 /TIER=ConsEnd /STK=0 /UG=Rn.32790 /UG_TITLE=ESTs, Weakly similar to T24423 hypothetical protein T04A8.6 - Caenorhabditis elegans (C.elegans) BG667615 Mki67 (FHA domain) interacting nucleolar phosphoprotein Mki67ip 246042 NM_139186 0000794 // condensed nuclear chromosome // inferred from electronic annotation /// 0000794 // condensed nuclear chromosome // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395596_at BM389675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389675 /DB_XREF=gi:18189728 /DB_XREF=UI-R-CN1-cjo-o-23-0-UI.s1 /CLONE=UI-R-CN1-cjo-o-23-0-UI /FEA=EST /CNT=4 /TID=Rn.42809.1 /TIER=ConsEnd /STK=0 /UG=Rn.42809 /UG_TITLE=ESTs BM389675 1395597_at AW921081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921081 /DB_XREF=gi:8086900 /DB_XREF=EST352385 /CLONE=RGIHN16 /FEA=EST /CNT=4 /TID=Rn.55184.1 /TIER=ConsEnd /STK=0 /UG=Rn.55184 /UG_TITLE=ESTs AW921081 1395598_at BF408769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408769 /DB_XREF=gi:11396744 /DB_XREF=UI-R-BT1-bne-b-01-0-UI.s1 /CLONE=UI-R-BT1-bne-b-01-0-UI /FEA=EST /CNT=4 /TID=Rn.38052.1 /TIER=ConsEnd /STK=0 /UG=Rn.38052 /UG_TITLE=ESTs BF408769 1395599_at BF399239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399239 /DB_XREF=gi:11384243 /DB_XREF=UI-R-CA1-biz-d-03-0-UI.s1 /CLONE=UI-R-CA1-biz-d-03-0-UI /FEA=EST /CNT=4 /TID=Rn.62895.1 /TIER=ConsEnd /STK=0 /UG=Rn.62895 /UG_TITLE=ESTs BF399239 1395600_at AI227694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227694 /DB_XREF=gi:3811581 /DB_XREF=EST224389 /CLONE=RBRCK32 /FEA=EST /CNT=4 /TID=Rn.24254.1 /TIER=ConsEnd /STK=0 /UG=Rn.24254 /UG_TITLE=ESTs AI227694 coiled-coil domain containing 117 Ccdc117 498404 NM_001017502 1395601_at BI302615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302615 /DB_XREF=gi:14978895 /DB_XREF=UI-R-DM0-cir-f-04-0-UI.s1 /CLONE=UI-R-DM0-cir-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.44072.1 /TIER=ConsEnd /STK=0 /UG=Rn.44072 /UG_TITLE=ESTs BI302615 nudix (nucleoside diphosphate linked moiety X)-type motif 12 Nudt12 367323 NM_001109010 0005634 // nucleus // not recorded 0016787 // hydrolase activity // inferred from electronic annotation 1395602_at BF413296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413296 /DB_XREF=gi:11401285 /DB_XREF=UI-R-BT1-bnw-b-12-0-UI.s1 /CLONE=UI-R-BT1-bnw-b-12-0-UI /FEA=EST /CNT=4 /TID=Rn.62299.1 /TIER=ConsEnd /STK=0 /UG=Rn.62299 /UG_TITLE=ESTs BF413296 1395603_at BI300879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300879 /DB_XREF=gi:14977159 /DB_XREF=UI-R-CV2-cil-a-10-0-UI.s1 /CLONE=UI-R-CV2-cil-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.76801.1 /TIER=ConsEnd /STK=0 /UG=Rn.76801 /UG_TITLE=ESTs BI300879 Crx opposite strand transcript 1 Crxos1 292625 XM_001073994 /// XM_238082 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1395604_at BF555073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555073 /DB_XREF=gi:11664803 /DB_XREF=UI-R-E0-ch-g-09-0-UI.r1 /CLONE=UI-R-E0-ch-g-09-0-UI /FEA=EST /CNT=4 /TID=Rn.15084.2 /TIER=ConsEnd /STK=0 /UG=Rn.15084 /UG_TITLE=ESTs BF555073 1395605_at BM384452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384452 /DB_XREF=gi:18184505 /DB_XREF=UI-R-CN1-cjn-m-24-0-UI.s1 /CLONE=UI-R-CN1-cjn-m-24-0-UI /FEA=EST /CNT=4 /TID=Rn.38029.1 /TIER=ConsEnd /STK=0 /UG=Rn.38029 /UG_TITLE=ESTs, Weakly similar to CRK RAT PROTO-ONCOGENE C-CRK (R.norvegicus) BM384452 v-crk sarcoma virus CT10 oncogene homolog (avian)-like Crkl 287942 NM_001008284 0001568 // blood vessel development // inferred from electronic annotation /// 0001568 // blood vessel development // not recorded /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0048538 // thymus development // inferred from electronic annotation /// 0048538 // thymus development // not recorded /// 0060017 // parathyroid gland development // inferred from electronic annotation /// 0060017 // parathyroid gland development // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1395606_at BF412220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412220 /DB_XREF=gi:11400209 /DB_XREF=UI-R-BT1-bmz-e-04-0-UI.s1 /CLONE=UI-R-BT1-bmz-e-04-0-UI /FEA=EST /CNT=4 /TID=Rn.41164.1 /TIER=ConsEnd /STK=0 /UG=Rn.41164 /UG_TITLE=ESTs BF412220 1395607_at BE109775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109775 /DB_XREF=gi:8501880 /DB_XREF=UI-R-BJ1-aul-a-10-0-UI.s1 /CLONE=UI-R-BJ1-aul-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.49277.1 /TIER=ConsEnd /STK=0 /UG=Rn.49277 /UG_TITLE=ESTs BE109775 1395608_at BF391815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391815 /DB_XREF=gi:11376670 /DB_XREF=UI-R-CA1-bcu-h-11-0-UI.s1 /CLONE=UI-R-CA1-bcu-h-11-0-UI /FEA=EST /CNT=4 /TID=Rn.62931.1 /TIER=ConsEnd /STK=0 /UG=Rn.62931 /UG_TITLE=ESTs BF391815 1395609_at BF543078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543078 /DB_XREF=gi:11634185 /DB_XREF=UI-R-AF1-aap-h-06-0-UI.r1 /CLONE=UI-R-AF1-aap-h-06-0-UI /FEA=EST /CNT=4 /TID=Rn.63816.1 /TIER=ConsEnd /STK=0 /UG=Rn.63816 /UG_TITLE=ESTs BF543078 NKAIN2 transcript-like LOC100362992 100362992 XM_002728643 1395610_at AI600124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI600124 /DB_XREF=gi:4609172 /DB_XREF=EST251827 /CLONE=REMDS26 /FEA=EST /CNT=4 /TID=Rn.40298.1 /TIER=ConsEnd /STK=0 /UG=Rn.40298 /UG_TITLE=ESTs, Weakly similar to LEUKOCYTE SURFACE ANTIGEN CD53 (R.norvegicus) AI600124 tetraspanin 33 Tspan33 500065 NM_001109227 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1395611_at BE106061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106061 /DB_XREF=gi:8498163 /DB_XREF=UI-R-BO1-ask-d-11-0-UI.s1 /CLONE=UI-R-BO1-ask-d-11-0-UI /FEA=EST /CNT=4 /TID=Rn.50868.1 /TIER=ConsEnd /STK=0 /UG=Rn.50868 /UG_TITLE=ESTs BE106061 1395612_at BI297603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297603 /DB_XREF=gi:14973883 /DB_XREF=UI-R-CV2-cgy-b-06-0-UI.s1 /CLONE=UI-R-CV2-cgy-b-06-0-UI /FEA=EST /CNT=4 /TID=Rn.79888.1 /TIER=ConsEnd /STK=0 /UG=Rn.79888 /UG_TITLE=ESTs BI297603 pellino 3 Peli3 309157 NM_001127542 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395613_at BF408015 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408015 /DB_XREF=gi:11395990 /DB_XREF=UI-R-BJ2-bqy-h-07-0-UI.s1 /CLONE=UI-R-BJ2-bqy-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.63930.1 /TIER=ConsEnd /STK=0 /UG=Rn.63930 /UG_TITLE=ESTs BF408015 1395614_at AI407215 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407215 /DB_XREF=gi:4250719 /DB_XREF=EST235503 /CLONE=ROVDX74 /FEA=EST /CNT=4 /TID=Rn.38986.1 /TIER=ConsEnd /STK=0 /UG=Rn.38986 /UG_TITLE=ESTs, Highly similar to S22646 splicing factor U2AF homolog - mouse (M.musculus) AI407215 similar to U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform b LOC690372 690372 XM_218195 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0070742 // C2H2 zinc finger domain binding // inferred from electronic annotation 1395615_at BE099150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099150 /DB_XREF=gi:8491026 /DB_XREF=UI-R-BJ1-ati-g-12-0-UI.s1 /CLONE=UI-R-BJ1-ati-g-12-0-UI /FEA=EST /CNT=4 /TID=Rn.49842.1 /TIER=ConsEnd /STK=0 /UG=Rn.49842 /UG_TITLE=ESTs BE099150 1395616_at BE116128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116128 /DB_XREF=gi:8508233 /DB_XREF=UI-R-BS1-axz-g-04-0-UI.s1 /CLONE=UI-R-BS1-axz-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.52626.1 /TIER=ConsEnd /STK=0 /UG=Rn.52626 /UG_TITLE=ESTs, Weakly similar to CBX5 MOUSE CHROMOBOX PROTEIN HOMOLOG 5 (M.musculus) BE116128 M-phase phosphoprotein 8 Mphosph8 290270 NM_001017375 0006333 // chromatin assembly or disassembly // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003682 // chromatin binding // inferred from electronic annotation 1395617_at AA943034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943034 /DB_XREF=gi:3102950 /DB_XREF=EST198533 /CLONE=RBRAE04 /FEA=EST /CNT=4 /TID=Rn.49455.1 /TIER=ConsEnd /STK=0 /UG=Rn.49455 /UG_TITLE=ESTs AA943034 cell adhesion molecule 4 Cadm4 365216 NM_001047107 0007155 // cell adhesion // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1395618_at BG673431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG673431 /DB_XREF=gi:13895530 /DB_XREF=DRNBVC03 /CLONE=DRNBVC03 /FEA=EST /CNT=4 /TID=Rn.40460.1 /TIER=ConsEnd /STK=0 /UG=Rn.40460 /UG_TITLE=ESTs BG673431 COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis) Cops4 360915 NM_001004275 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0008180 // signalosome // inferred from electronic annotation /// 0008180 // signalosome // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395619_at BF547002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547002 /DB_XREF=gi:11638109 /DB_XREF=UI-R-C1-kj-f-01-0-UI.r1 /CLONE=UI-R-C1-kj-f-01-0-UI /FEA=EST /CNT=4 /TID=Rn.22538.1 /TIER=ConsEnd /STK=0 /UG=Rn.22538 /UG_TITLE=ESTs, Weakly similar to ArgAbl-interacting protein ArgBP2 (Rattus norvegicus) (R.norvegicus) BF547002 sorbin and SH3 domain containing 3 Sorbs3 282843 NM_001005762 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006936 // muscle contraction // not recorded /// 0031589 // cell-substrate adhesion // not recorded /// 0031589 // cell-substrate adhesion // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0051496 // positive regulation of stress fiber assembly // not recorded /// 0051496 // positive regulation of stress fiber assembly // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0017166 // vinculin binding // not recorded /// 0017166 // vinculin binding // inferred from electronic annotation 1395620_at AI710510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI710510 /DB_XREF=gi:5000286 /DB_XREF=UI-R-AG1-aak-h-09-0-UI.s1 /CLONE=UI-R-AG1-aak-h-09-0-UI /FEA=EST /CNT=4 /TID=Rn.35106.1 /TIER=ConsEnd /STK=0 /UG=Rn.35106 /UG_TITLE=ESTs, Weakly similar to T34036 hypothetical protein B0041.7 - Caenorhabditis elegans (C.elegans) AI710510 family with sequence similarity 133, member B Fam133b 362320 NM_001024799 1395621_at H33102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33102 /DB_XREF=gi:978519 /DB_XREF=EST108790 /FEA=EST /CNT=4 /TID=Rn.50402.1 /TIER=ConsEnd /STK=0 /UG=Rn.50402 /UG_TITLE=ESTs, Weakly similar to ADPATP carrier protein like (Caenorhabditis elegans) (C.elegans) H33102 mitochondrial carrier triple repeat 2 Mcart2 305365 XM_002724971 /// XM_223434 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1395622_at BF405828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405828 /DB_XREF=gi:11393768 /DB_XREF=UI-R-CA1-bje-o-09-0-UI.s1 /CLONE=UI-R-CA1-bje-o-09-0-UI /FEA=EST /CNT=4 /TID=Rn.60828.1 /TIER=ConsEnd /STK=0 /UG=Rn.60828 /UG_TITLE=ESTs BF405828 1395623_at AW521959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521959 /DB_XREF=gi:7164344 /DB_XREF=UI-R-BO0-agu-h-08-0-UI.s1 /CLONE=UI-R-BO0-agu-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.33167.1 /TIER=ConsEnd /STK=0 /UG=Rn.33167 /UG_TITLE=ESTs AW521959 glutaminyl-peptide cyclotransferase-like Qpctl 292687 NM_001106230 0006508 // proteolysis // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1395624_at BF546268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546268 /DB_XREF=gi:11637375 /DB_XREF=UI-R-C2p-ri-d-04-0-UI.r1 /CLONE=UI-R-C2p-ri-d-04-0-UI /FEA=EST /CNT=4 /TID=Rn.22822.1 /TIER=ConsEnd /STK=0 /UG=Rn.22822 /UG_TITLE=ESTs BF546268 Similar to RIKEN cDNA C430008C19 RGD1307947 314788 NM_001014083 1395625_at BF415216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415216 /DB_XREF=gi:11403205 /DB_XREF=UI-R-BJ2-boz-c-10-0-UI.s1 /CLONE=UI-R-BJ2-boz-c-10-0-UI /FEA=EST /CNT=4 /TID=Rn.27261.1 /TIER=ConsEnd /STK=0 /UG=Rn.27261 /UG_TITLE=ESTs BF415216 1395626_at BF402072 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402072 /DB_XREF=gi:11390088 /DB_XREF=UI-R-CA0-bhw-b-07-0-UI.s1 /CLONE=UI-R-CA0-bhw-b-07-0-UI /FEA=EST /CNT=4 /TID=Rn.63405.1 /TIER=ConsEnd /STK=0 /UG=Rn.63405 /UG_TITLE=ESTs BF402072 1395627_at BF401766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401766 /DB_XREF=gi:11389741 /DB_XREF=UI-R-CA0-bgo-d-12-0-UI.s1 /CLONE=UI-R-CA0-bgo-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.28536.1 /TIER=ConsEnd /STK=0 /UG=Rn.28536 /UG_TITLE=ESTs BF401766 1395628_at AW434310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434310 /DB_XREF=gi:6965617 /DB_XREF=UI-R-BJ0p-afw-f-12-0-UI.s1 /CLONE=UI-R-BJ0p-afw-f-12-0-UI /FEA=EST /CNT=4 /TID=Rn.54178.1 /TIER=ConsEnd /STK=0 /UG=Rn.54178 /UG_TITLE=ESTs AW434310 1395629_at BE105336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105336 /DB_XREF=gi:8497438 /DB_XREF=UI-R-BX0-asd-d-11-0-UI.s1 /CLONE=UI-R-BX0-asd-d-11-0-UI /FEA=EST /CNT=4 /TID=Rn.44880.1 /TIER=ConsEnd /STK=0 /UG=Rn.44880 /UG_TITLE=ESTs BE105336 1395630_at BF413510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413510 /DB_XREF=gi:11401499 /DB_XREF=UI-R-CA0-bof-b-01-0-UI.s1 /CLONE=UI-R-CA0-bof-b-01-0-UI /FEA=EST /CNT=4 /TID=Rn.55750.1 /TIER=ConsEnd /STK=0 /UG=Rn.55750 /UG_TITLE=ESTs, Weakly similar to CYA6 RAT ADENYLATE CYCLASE, TYPE VI (R.norvegicus) BF413510 adenylate cyclase 9 Adcy9 302950 NM_001106980 0006171 // cAMP biosynthetic process // inferred from mutant phenotype /// 0009190 // cyclic nucleotide biosynthetic process // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay 0004016 // adenylate cyclase activity // inferred from mutant phenotype /// 0016849 // phosphorus-oxygen lyase activity // inferred from electronic annotation 1395631_at BF418465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418465 /DB_XREF=gi:11406454 /DB_XREF=UI-R-BJ2-bqg-a-09-0-UI.s1 /CLONE=UI-R-BJ2-bqg-a-09-0-UI /FEA=EST /CNT=4 /TID=Rn.45120.1 /TIER=ConsEnd /STK=0 /UG=Rn.45120 /UG_TITLE=ESTs BF418465 1395632_at AI715532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715532 /DB_XREF=gi:5032785 /DB_XREF=UI-R-Y0-abq-f-10-0-UI.s1 /CLONE=UI-R-Y0-abq-f-10-0-UI /FEA=EST /CNT=4 /TID=Rn.40644.1 /TIER=ConsEnd /STK=0 /UG=Rn.40644 /UG_TITLE=ESTs AI715532 1395633_at BF391829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391829 /DB_XREF=gi:11376684 /DB_XREF=UI-R-CA1-bcy-b-03-0-UI.s1 /CLONE=UI-R-CA1-bcy-b-03-0-UI /FEA=EST /CNT=4 /TID=Rn.46392.1 /TIER=ConsEnd /STK=0 /UG=Rn.46392 /UG_TITLE=ESTs BF391829 1395634_at AI576190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576190 /DB_XREF=gi:4560566 /DB_XREF=UI-R-Y0-ux-b-03-0-UI.s1 /CLONE=UI-R-Y0-ux-b-03-0-UI /FEA=EST /CNT=4 /TID=Rn.38077.1 /TIER=ConsEnd /STK=0 /UG=Rn.38077 /UG_TITLE=ESTs AI576190 1395635_at BE098317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098317 /DB_XREF=gi:8490180 /DB_XREF=UI-R-BJ1-asy-c-07-0-UI.s1 /CLONE=UI-R-BJ1-asy-c-07-0-UI /FEA=EST /CNT=4 /TID=Rn.29475.1 /TIER=ConsEnd /STK=0 /UG=Rn.29475 /UG_TITLE=ESTs BE098317 tumor necrosis factor receptor superfamily, member 26 Tnfrsf26 361685 NM_001108511 0004872 // receptor activity // inferred from electronic annotation 1395636_at AI576368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576368 /DB_XREF=gi:4560744 /DB_XREF=UI-R-Y0-vf-h-01-0-UI.s1 /CLONE=UI-R-Y0-vf-h-01-0-UI /FEA=EST /CNT=4 /TID=Rn.30160.1 /TIER=ConsEnd /STK=0 /UG=Rn.30160 /UG_TITLE=ESTs AI576368 1395637_at BF412025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412025 /DB_XREF=gi:11400014 /DB_XREF=UI-R-BT1-bms-e-07-0-UI.s1 /CLONE=UI-R-BT1-bms-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.51374.1 /TIER=ConsEnd /STK=0 /UG=Rn.51374 /UG_TITLE=ESTs, Highly similar to T47148 hypothetical protein DKFZp761P039.1 (H.sapiens) BF412025 aspartate beta-hydroxylase domain containing 2 Asphd2 364948 NM_001009716 0018193 // peptidyl-amino acid modification // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // inferred from electronic annotation 0004597 // peptide-aspartate beta-dioxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation 1395638_at BF558937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558937 /DB_XREF=gi:11668667 /DB_XREF=UI-R-A1-er-h-02-0-UI.r1 /CLONE=UI-R-A1-er-h-02-0-UI /FEA=EST /CNT=4 /TID=Rn.23079.1 /TIER=ConsEnd /STK=0 /UG=Rn.23079 /UG_TITLE=ESTs, Weakly similar to S57447 HPBRII-7 protein (H.sapiens) BF558937 cleavage and polyadenylation specific factor 7, 59kDa Cpsf7 365407 NM_001014245 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395639_at AW254678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254678 /DB_XREF=gi:6598269 /DB_XREF=UI-R-BJ0-adu-d-10-0-UI.s1 /CLONE=UI-R-BJ0-adu-d-10-0-UI /FEA=EST /CNT=4 /TID=Rn.41251.1 /TIER=ConsEnd /STK=0 /UG=Rn.41251 /UG_TITLE=ESTs, Weakly similar to S06084 Ig kappa chain precursor - rat (R.norvegicus) AW254678 1395640_at AI013729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013729 /DB_XREF=gi:3227785 /DB_XREF=EST208404 /CLONE=RSPBS17 /FEA=EST /CNT=4 /TID=Rn.41067.1 /TIER=ConsEnd /STK=0 /UG=Rn.41067 /UG_TITLE=ESTs, Highly similar to T51168 anaphase-promoting complex subunit 8 (H.sapiens) AI013729 CDC23 (cell division cycle 23, yeast, homolog) Cdc23 291689 NM_001100659 0000080 // G1 phase of mitotic cell cycle // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007080 // mitotic metaphase plate congression // inferred from electronic annotation /// 0030071 // regulation of mitotic metaphase/anaphase transition // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070979 // protein K11-linked ubiquitination // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005680 // anaphase-promoting complex // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1395641_at BF394819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394819 /DB_XREF=gi:11379777 /DB_XREF=UI-R-CA0-bfz-c-12-0-UI.s1 /CLONE=UI-R-CA0-bfz-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.63608.1 /TIER=ConsEnd /STK=0 /UG=Rn.63608 /UG_TITLE=ESTs BF394819 similar to CG18437-PA /// similar to CG18437-PA LOC316460 /// LOC689991 316460 /// 689991 XM_001053529 /// XR_006764 1395642_at BG372596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372596 /DB_XREF=gi:13269133 /DB_XREF=UI-R-CV1-brs-b-04-0-UI.s1 /CLONE=UI-R-CV1-brs-b-04-0-UI /FEA=EST /CNT=4 /TID=Rn.27851.1 /TIER=ConsEnd /STK=0 /UG=Rn.27851 /UG_TITLE=ESTs BG372596 nucleolar protein 9 Nol9 313744 XM_001076353 /// XM_233702 1395643_at BF386985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386985 /DB_XREF=gi:11371809 /DB_XREF=UI-R-CA1-bbj-h-09-0-UI.s1 /CLONE=UI-R-CA1-bbj-h-09-0-UI /FEA=EST /CNT=4 /TID=Rn.62667.1 /TIER=ConsEnd /STK=0 /UG=Rn.62667 /UG_TITLE=ESTs BF386985 1395644_at BF386852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386852 /DB_XREF=gi:11371676 /DB_XREF=UI-R-CA1-bbo-d-02-0-UI.s1 /CLONE=UI-R-CA1-bbo-d-02-0-UI /FEA=EST /CNT=4 /TID=Rn.40675.1 /TIER=ConsEnd /STK=0 /UG=Rn.40675 /UG_TITLE=ESTs, Weakly similar to ABC1 MOUSE ATP-BINDING CASSETTE, SUB-FAMILY A, MEMBER 1 (M.musculus) BF386852 ATP-binding cassette, sub-family A (ABC1), member 8 Abca8 303637 XM_001081601 /// XM_221074 0006810 // transport // not recorded 0005743 // mitochondrial inner membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // not recorded 1395645_at BF408105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408105 /DB_XREF=gi:11396080 /DB_XREF=UI-R-BJ2-bqz-g-07-0-UI.s1 /CLONE=UI-R-BJ2-bqz-g-07-0-UI /FEA=EST /CNT=4 /TID=Rn.54038.1 /TIER=ConsEnd /STK=0 /UG=Rn.54038 /UG_TITLE=ESTs BF408105 1395646_at AW530447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530447 /DB_XREF=gi:7172861 /DB_XREF=UI-R-C4-akx-b-08-0-UI.s1 /CLONE=UI-R-C4-akx-b-08-0-UI /FEA=EST /CNT=4 /TID=Rn.30635.1 /TIER=ConsEnd /STK=0 /UG=Rn.30635 /UG_TITLE=ESTs, Moderately similar to T08763 hypothetical protein DKFZp586A011.1 (H.sapiens) AW530447 LETM1 domain containing 1 Letmd1 681352 NM_001122781 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // not recorded 1395647_at AA684690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA684690 /DB_XREF=gi:2671288 /DB_XREF=EST105125 /CLONE=RPCAG08 /FEA=EST /CNT=4 /TID=Rn.48850.1 /TIER=ConsEnd /STK=0 /UG=Rn.48850 /UG_TITLE=ESTs AA684690 Tu translation elongation factor, mitochondrial Tufm 293481 NM_001106295 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0006414 // translational elongation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0042645 // mitochondrial nucleoid // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0003746 // translation elongation factor activity // not recorded /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1395648_at BF389377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389377 /DB_XREF=gi:11374207 /DB_XREF=UI-R-BS2-bdj-b-03-0-UI.s1 /CLONE=UI-R-BS2-bdj-b-03-0-UI /FEA=EST /CNT=4 /TID=Rn.58366.1 /TIER=ConsEnd /STK=0 /UG=Rn.58366 /UG_TITLE=ESTs BF389377 1395649_at BF542654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542654 /DB_XREF=gi:11633761 /DB_XREF=UI-R-C3-sm-b-06-0-UI.r1 /CLONE=UI-R-C3-sm-b-06-0-UI /FEA=EST /CNT=4 /TID=Rn.42124.1 /TIER=ConsEnd /STK=0 /UG=Rn.42124 /UG_TITLE=ESTs, Weakly similar to T21393 hypothetical protein F26D10.11 - Caenorhabditis elegans (C.elegans) BF542654 lipoma HMGIC fusion partner-like 4 Lhfpl4 353230 NM_181387 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1395650_at BF543766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543766 /DB_XREF=gi:11634873 /DB_XREF=UI-R-C3-tb-g-11-0-UI.r1 /CLONE=UI-R-C3-tb-g-11-0-UI /FEA=EST /CNT=4 /TID=Rn.65467.1 /TIER=ConsEnd /STK=0 /UG=Rn.65467 /UG_TITLE=ESTs BF543766 1395651_at AI511118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511118 /DB_XREF=gi:4416817 /DB_XREF=UI-R-BT0-po-d-12-0-UI.s1 /CLONE=UI-R-BT0-po-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.28450.1 /TIER=ConsEnd /STK=0 /UG=Rn.28450 /UG_TITLE=ESTs AI511118 1395652_at BI296264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296264 /DB_XREF=gi:14960531 /DB_XREF=UI-R-DK0-cey-c-07-0-UI.s1 /CLONE=UI-R-DK0-cey-c-07-0-UI /FEA=EST /CNT=4 /TID=Rn.35544.1 /TIER=ConsEnd /STK=0 /UG=Rn.35544 /UG_TITLE=ESTs, Moderately similar to T00256 hypothetical protein KIAA0609 (H.sapiens) BI296264 glycosyltransferase-like 1B Gyltl1b 311202 NM_199107 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1395653_at BG379043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379043 /DB_XREF=gi:13303515 /DB_XREF=UI-R-BT1-bnm-h-08-0-UI.s1 /CLONE=UI-R-BT1-bnm-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.50315.1 /TIER=ConsEnd /STK=0 /UG=Rn.50315 /UG_TITLE=ESTs BG379043 1395654_at BI278299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278299 /DB_XREF=gi:14925008 /DB_XREF=UI-R-CY0-bxr-g-11-0-UI.s1 /CLONE=UI-R-CY0-bxr-g-11-0-UI /FEA=EST /CNT=4 /TID=Rn.57038.1 /TIER=ConsEnd /STK=0 /UG=Rn.57038 /UG_TITLE=ESTs BI278299 coiled-coil domain containing 25 Ccdc25 361059 NM_001108382 1395655_at BM383435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383435 /DB_XREF=gi:18183488 /DB_XREF=UI-R-DM1-ckb-j-10-0-UI.s1 /CLONE=UI-R-DM1-ckb-j-10-0-UI /FEA=EST /CNT=4 /TID=Rn.57345.1 /TIER=ConsEnd /STK=0 /UG=Rn.57345 /UG_TITLE=ESTs BM383435 1395656_at BI298185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298185 /DB_XREF=gi:14974465 /DB_XREF=UI-R-CV2-chg-d-01-0-UI.s1 /CLONE=UI-R-CV2-chg-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.66268.1 /TIER=ConsEnd /STK=0 /UG=Rn.66268 /UG_TITLE=ESTs BI298185 1395657_at BF289401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289401 /DB_XREF=gi:11220471 /DB_XREF=EST453992 /CLONE=RGIHH01 /FEA=EST /CNT=4 /TID=Rn.55765.1 /TIER=ConsEnd /STK=0 /UG=Rn.55765 /UG_TITLE=ESTs BF289401 1395658_at BI275588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275588 /DB_XREF=gi:14919646 /DB_XREF=UI-R-CW0-bwk-b-05-0-UI.s1 /CLONE=UI-R-CW0-bwk-b-05-0-UI /FEA=EST /CNT=4 /TID=Rn.45828.1 /TIER=ConsEnd /STK=0 /UG=Rn.45828 /UG_TITLE=ESTs BI275588 1395659_at AI715999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715999 /DB_XREF=gi:5033252 /DB_XREF=UI-R-Y0-abz-g-10-0-UI.s1 /CLONE=UI-R-Y0-abz-g-10-0-UI /FEA=EST /CNT=4 /TID=Rn.33698.1 /TIER=ConsEnd /STK=0 /UG=Rn.33698 /UG_TITLE=ESTs AI715999 1395660_at BE114185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114185 /DB_XREF=gi:8506290 /DB_XREF=UI-R-CA0-axo-a-10-0-UI.s1 /CLONE=UI-R-CA0-axo-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.48846.1 /TIER=ConsEnd /STK=0 /UG=Rn.48846 /UG_TITLE=ESTs BE114185 1395661_at BF388125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388125 /DB_XREF=gi:11372949 /DB_XREF=UI-R-CA1-bby-e-07-0-UI.s1 /CLONE=UI-R-CA1-bby-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.51781.1 /TIER=ConsEnd /STK=0 /UG=Rn.51781 /UG_TITLE=ESTs BF388125 1395662_at AW531934 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531934 /DB_XREF=gi:7174348 /DB_XREF=UI-R-C4-alh-a-12-0-UI.s1 /CLONE=UI-R-C4-alh-a-12-0-UI /FEA=EST /CNT=4 /TID=Rn.35334.1 /TIER=ConsEnd /STK=0 /UG=Rn.35334 /UG_TITLE=ESTs AW531934 1395663_at BM390763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390763 /DB_XREF=gi:18190816 /DB_XREF=UI-R-CN1-cjr-n-01-0-UI.s1 /CLONE=UI-R-CN1-cjr-n-01-0-UI /FEA=EST /CNT=4 /TID=Rn.48232.1 /TIER=ConsEnd /STK=0 /UG=Rn.48232 /UG_TITLE=ESTs BM390763 mal, T-cell differentiation protein-like Mall 362211 NM_001014182 0000139 // Golgi membrane // inferred from electronic annotation /// 0000139 // Golgi membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // not recorded /// 0045121 // membrane raft // inferred from electronic annotation /// 0045121 // membrane raft // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395664_at BE118148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118148 /DB_XREF=gi:8510253 /DB_XREF=UI-R-BS1-azj-c-04-0-UI.s1 /CLONE=UI-R-BS1-azj-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.51186.1 /TIER=ConsEnd /STK=0 /UG=Rn.51186 /UG_TITLE=ESTs BE118148 1395665_at BF400840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400840 /DB_XREF=gi:11388780 /DB_XREF=UI-R-CA0-bhf-g-12-0-UI.s1 /CLONE=UI-R-CA0-bhf-g-12-0-UI /FEA=EST /CNT=4 /TID=Rn.50339.1 /TIER=ConsEnd /STK=0 /UG=Rn.50339 /UG_TITLE=ESTs BF400840 1395666_at BF390830 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390830 /DB_XREF=gi:11375677 /DB_XREF=UI-R-CA1-bcp-h-10-0-UI.s1 /CLONE=UI-R-CA1-bcp-h-10-0-UI /FEA=EST /CNT=4 /TID=Rn.61808.1 /TIER=ConsEnd /STK=0 /UG=Rn.61808 /UG_TITLE=ESTs BF390830 1395667_at BF418964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418964 /DB_XREF=gi:11406953 /DB_XREF=UI-R-BJ2-bqk-h-11-0-UI.s1 /CLONE=UI-R-BJ2-bqk-h-11-0-UI /FEA=EST /CNT=4 /TID=Rn.52592.1 /TIER=ConsEnd /STK=0 /UG=Rn.52592 /UG_TITLE=ESTs BF418964 similar to apurinic/apyrimidinic endonuclease 2 RGD1565983 317628 NM_001079892 0006281 // DNA repair // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1395668_at BF404249 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404249 /DB_XREF=gi:11392224 /DB_XREF=UI-R-CA1-biw-o-14-0-UI.s1 /CLONE=UI-R-CA1-biw-o-14-0-UI /FEA=EST /CNT=4 /TID=Rn.62176.1 /TIER=ConsEnd /STK=0 /UG=Rn.62176 /UG_TITLE=ESTs, Weakly similar to S64906 hypothetical protein YLR074c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BF404249 Zinc finger protein 593 Znf593 298546 NM_001106689 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395669_at AW434878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434878 /DB_XREF=gi:6966185 /DB_XREF=UI-R-BJ0p-afg-b-05-0-UI.s1 /CLONE=UI-R-BJ0p-afg-b-05-0-UI /FEA=EST /CNT=4 /TID=Rn.46065.1 /TIER=ConsEnd /STK=0 /UG=Rn.46065 /UG_TITLE=ESTs AW434878 1395670_at BF406267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406267 /DB_XREF=gi:11394242 /DB_XREF=UI-R-CA1-bjf-o-14-0-UI.s1 /CLONE=UI-R-CA1-bjf-o-14-0-UI /FEA=EST /CNT=4 /TID=Rn.60936.1 /TIER=ConsEnd /STK=0 /UG=Rn.60936 /UG_TITLE=ESTs BF406267 1395671_at BF420750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420750 /DB_XREF=gi:11408739 /DB_XREF=UI-R-BJ2-bpz-g-03-0-UI.s1 /CLONE=UI-R-BJ2-bpz-g-03-0-UI /FEA=EST /CNT=4 /TID=Rn.27041.1 /TIER=ConsEnd /STK=0 /UG=Rn.27041 /UG_TITLE=ESTs BF420750 Williams-Beuren syndrome chromosome region 28 (human) Wbscr28 288604 XM_001077705 /// XM_213758 1395672_at BF419422 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419422 /DB_XREF=gi:11407411 /DB_XREF=UI-R-CA1-bnr-e-03-0-UI.s1 /CLONE=UI-R-CA1-bnr-e-03-0-UI /FEA=EST /CNT=4 /TID=Rn.46193.1 /TIER=ConsEnd /STK=0 /UG=Rn.46193 /UG_TITLE=ESTs BF419422 1395673_at BF412214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412214 /DB_XREF=gi:11400203 /DB_XREF=UI-R-BT1-bmz-d-08-0-UI.s1 /CLONE=UI-R-BT1-bmz-d-08-0-UI /FEA=EST /CNT=4 /TID=Rn.46263.1 /TIER=ConsEnd /STK=0 /UG=Rn.46263 /UG_TITLE=ESTs BF412214 1395674_at BF408259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408259 /DB_XREF=gi:11396199 /DB_XREF=UI-R-BJ2-bqr-c-04-0-UI.s1 /CLONE=UI-R-BJ2-bqr-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.46381.1 /TIER=ConsEnd /STK=0 /UG=Rn.46381 /UG_TITLE=ESTs BF408259 1395675_at BF412173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412173 /DB_XREF=gi:11400162 /DB_XREF=UI-R-BT1-bmu-g-02-0-UI.s1 /CLONE=UI-R-BT1-bmu-g-02-0-UI /FEA=EST /CNT=4 /TID=Rn.47029.1 /TIER=ConsEnd /STK=0 /UG=Rn.47029 /UG_TITLE=ESTs BF412173 Sec61 alpha 1 subunit (S. cerevisiae) Sec61a1 80843 NM_199256 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0034341 // response to interferon-gamma // inferred from expression pattern /// 0055085 // transmembrane transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019718 // rough microsome // inferred from direct assay 0005515 // protein binding // not recorded /// 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from electronic annotation /// 0043022 // ribosome binding // inferred from electronic annotation /// 0043022 // ribosome binding // not recorded 1395676_at BF416069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416069 /DB_XREF=gi:11404058 /DB_XREF=UI-R-CA0-bkh-h-07-0-UI.s1 /CLONE=UI-R-CA0-bkh-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.50376.1 /TIER=ConsEnd /STK=0 /UG=Rn.50376 /UG_TITLE=ESTs BF416069 1395677_at BF411677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411677 /DB_XREF=gi:11399666 /DB_XREF=UI-R-BT1-bmv-e-05-0-UI.s1 /CLONE=UI-R-BT1-bmv-e-05-0-UI /FEA=EST /CNT=4 /TID=Rn.51355.1 /TIER=ConsEnd /STK=0 /UG=Rn.51355 /UG_TITLE=ESTs BF411677 1395678_at BM385351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385351 /DB_XREF=gi:18185404 /DB_XREF=UI-R-CN1-clv-i-22-0-UI.s1 /CLONE=UI-R-CN1-clv-i-22-0-UI /FEA=EST /CNT=4 /TID=Rn.53853.1 /TIER=ConsEnd /STK=0 /UG=Rn.53853 /UG_TITLE=ESTs BM385351 synaptotagmin XV Syt15 306285 NM_181632 0000299 // integral to membrane of membrane fraction // inferred from electronic annotation /// 0000299 // integral to membrane of membrane fraction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1395679_at BF399249 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399249 /DB_XREF=gi:11384253 /DB_XREF=UI-R-CA1-biz-d-23-0-UI.s1 /CLONE=UI-R-CA1-biz-d-23-0-UI /FEA=EST /CNT=4 /TID=Rn.59318.1 /TIER=ConsEnd /STK=0 /UG=Rn.59318 /UG_TITLE=ESTs BF399249 hypothetical protein LOC681924 LOC681924 681924 XM_001058984 1395680_at BF399925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399925 /DB_XREF=gi:11384936 /DB_XREF=UI-R-CA1-bja-k-04-0-UI.s1 /CLONE=UI-R-CA1-bja-k-04-0-UI /FEA=EST /CNT=4 /TID=Rn.59495.1 /TIER=ConsEnd /STK=0 /UG=Rn.59495 /UG_TITLE=ESTs, Highly similar to SH31_RAT SH3-CONTAINING GRB2-LIKE PROTEIN 1 (SH3 DOMAIN PROTEIN 2B) (SH3P8) (R.norvegicus) BF399925 SH3-domain GRB2-like 1 Sh3gl1 81922 NM_031239 0006897 // endocytosis // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0019902 // phosphatase binding // inferred from physical interaction /// 0051020 // GTPase binding // inferred from physical interaction 1395681_at BF410168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410168 /DB_XREF=gi:11398143 /DB_XREF=UI-R-CA1-bju-c-09-0-UI.s1 /CLONE=UI-R-CA1-bju-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.61723.1 /TIER=ConsEnd /STK=0 /UG=Rn.61723 /UG_TITLE=ESTs BF410168 1395682_at BF413452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413452 /DB_XREF=gi:11401441 /DB_XREF=UI-R-BT1-bob-c-11-0-UI.s1 /CLONE=UI-R-BT1-bob-c-11-0-UI /FEA=EST /CNT=4 /TID=Rn.62347.1 /TIER=ConsEnd /STK=0 /UG=Rn.62347 /UG_TITLE=ESTs BF413452 1395683_at BF419574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419574 /DB_XREF=gi:11407563 /DB_XREF=UI-R-CA0-bpd-f-08-0-UI.s1 /CLONE=UI-R-CA0-bpd-f-08-0-UI /FEA=EST /CNT=4 /TID=Rn.63568.1 /TIER=ConsEnd /STK=0 /UG=Rn.63568 /UG_TITLE=ESTs BF419574 N-acetyltransferase 15 (GCN5-related, putative) Nat15 363545 NM_001014226 0008152 // metabolic process // inferred from electronic annotation 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1395684_at AW534805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534805 /DB_XREF=gi:7177219 /DB_XREF=UI-R-BS0-anw-d-12-0-UI.s1 /CLONE=UI-R-BS0-anw-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.13493.1 /TIER=ConsEnd /STK=0 /UG=Rn.13493 /UG_TITLE=ESTs AW534805 1395685_at BF392586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392586 /DB_XREF=gi:11377443 /DB_XREF=UI-R-CA0-bfk-h-08-0-UI.s1 /CLONE=UI-R-CA0-bfk-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.28531.1 /TIER=ConsEnd /STK=0 /UG=Rn.28531 /UG_TITLE=ESTs BF392586 1395686_at BE096030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096030 /DB_XREF=gi:8486961 /DB_XREF=UI-R-BU0-apk-e-09-0-UI.s1 /CLONE=UI-R-BU0-apk-e-09-0-UI /FEA=EST /CNT=4 /TID=Rn.41598.1 /TIER=ConsEnd /STK=0 /UG=Rn.41598 /UG_TITLE=ESTs BE096030 1395687_at BE113420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113420 /DB_XREF=gi:8505525 /DB_XREF=UI-R-BJ1-awl-b-06-0-UI.s1 /CLONE=UI-R-BJ1-awl-b-06-0-UI /FEA=EST /CNT=4 /TID=Rn.50750.1 /TIER=ConsEnd /STK=0 /UG=Rn.50750 /UG_TITLE=ESTs BE113420 1395688_at BF415476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415476 /DB_XREF=gi:11403465 /DB_XREF=UI-R-CA1-bjz-c-12-0-UI.s1 /CLONE=UI-R-CA1-bjz-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.61300.1 /TIER=ConsEnd /STK=0 /UG=Rn.61300 /UG_TITLE=ESTs BF415476 1395689_at BF409912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409912 /DB_XREF=gi:11397887 /DB_XREF=UI-R-CA1-bjy-c-05-0-UI.s1 /CLONE=UI-R-CA1-bjy-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.61526.1 /TIER=ConsEnd /STK=0 /UG=Rn.61526 /UG_TITLE=ESTs BF409912 family with sequence similarity 169, member A Fam169a 310013 XM_001069116 /// XM_002725913 /// XM_226706 1395690_at BF413156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413156 /DB_XREF=gi:11401145 /DB_XREF=UI-R-BT1-bnx-d-03-0-UI.s1 /CLONE=UI-R-BT1-bnx-d-03-0-UI /FEA=EST /CNT=4 /TID=Rn.62262.1 /TIER=ConsEnd /STK=0 /UG=Rn.62262 /UG_TITLE=ESTs BF413156 1395691_at BF416203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416203 /DB_XREF=gi:11404192 /DB_XREF=UI-R-CA1-bki-f-04-0-UI.s1 /CLONE=UI-R-CA1-bki-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.62952.1 /TIER=ConsEnd /STK=0 /UG=Rn.62952 /UG_TITLE=ESTs BF416203 Kelch-like 22 (Drosophila) Klhl22 303792 NM_001107079 0051301 // cell division // not recorded /// 0051301 // cell division // inferred from sequence or structural similarity 0031463 // Cul3-RING ubiquitin ligase complex // not recorded /// 0031463 // Cul3-RING ubiquitin ligase complex // inferred from sequence or structural similarity 0005515 // protein binding // inferred from electronic annotation 1395692_at AW921106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921106 /DB_XREF=gi:8086926 /DB_XREF=EST352410 /CLONE=RGIHN44 /FEA=EST /CNT=4 /TID=Rn.55884.1 /TIER=ConsEnd /STK=0 /UG=Rn.55884 /UG_TITLE=ESTs AW921106 1395693_at BF553613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF553613 /DB_XREF=gi:11663343 /DB_XREF=UI-R-C2p-nw-f-10-0-UI.r1 /CLONE=UI-R-C2p-nw-f-10-0-UI /FEA=EST /CNT=4 /TID=Rn.39227.1 /TIER=ConsEnd /STK=0 /UG=Rn.39227 /UG_TITLE=ESTs, Weakly similar to S32476 protein disulfide-isomerase (R.norvegicus) BF553613 endoplasmic reticulum protein 44 Erp44 298066 NM_001008317 0006457 // protein folding // inferred from electronic annotation /// 0006457 // protein folding // not recorded /// 0006950 // response to stress // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0006986 // response to unfolded protein // inferred from electronic annotation /// 0006986 // response to unfolded protein // not recorded /// 0009100 // glycoprotein metabolic process // inferred from electronic annotation /// 0009100 // glycoprotein metabolic process // not recorded /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005793 // ER-Golgi intermediate compartment // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // not recorded 0003756 // protein disulfide isomerase activity // inferred from electronic annotation /// 0003756 // protein disulfide isomerase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395694_at BG669135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669135 /DB_XREF=gi:13891042 /DB_XREF=DRN05G09 /CLONE=DRN05G09 /FEA=EST /CNT=6 /TID=Rn.63927.1 /TIER=ConsEnd /STK=0 /UG=Rn.63927 /UG_TITLE=ESTs, Highly similar to T46366 hypothetical protein DKFZp434C0118.1 (H.sapiens) BG669135 f-box protein 9 Fbxo9 300849 NM_001011998 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395695_at BE126420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE126420 /DB_XREF=gi:8548990 /DB_XREF=DEPA0063 /FEA=EST /CNT=6 /TID=Rn.79233.1 /TIER=ConsEnd /STK=0 /UG=Rn.79233 /UG_TITLE=ESTs, Weakly similar to MILK FAT GLOBULE-EGF FACTOR 8 PRECURSOR (R.norvegicus) BE126420 AE binding protein 1 Aebp1 305494 NM_001100970 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0004180 // carboxypeptidase activity // not recorded /// 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1395696_at BF560674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF560674 /DB_XREF=gi:11670404 /DB_XREF=UI-R-C0-iq-h-08-0-UI.r2 /CLONE=UI-R-C0-iq-h-08-0-UI /FEA=EST /CNT=5 /TID=Rn.43030.1 /TIER=ConsEnd /STK=0 /UG=Rn.43030 /UG_TITLE=ESTs BF560674 similar to RIKEN cDNA 1600012F09 RGD1306613 306994 NM_001107356 1395697_at BF561171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561171 /DB_XREF=gi:11670901 /DB_XREF=UI-R-E1-gq-e-09-0-UI.r1 /CLONE=UI-R-E1-gq-e-09-0-UI /FEA=EST /CNT=5 /TID=Rn.21573.1 /TIER=ConsEnd /STK=0 /UG=Rn.21573 /UG_TITLE=ESTs, Moderately similar to EZH2 MOUSE ENHANCER OF ZESTE HOMOLOG 2 (M.musculus) BF561171 enhancer of zeste homolog 2 (Drosophila) Ezh2 312299 NM_001134979 0016571 // histone methylation // not recorded /// 0016571 // histone methylation // inferred from electronic annotation /// 0048387 // negative regulation of retinoic acid receptor signaling pathway // not recorded /// 0051154 // negative regulation of striated muscle cell differentiation // not recorded /// 0051154 // negative regulation of striated muscle cell differentiation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0035098 // ESC/E(Z) complex // not recorded /// 0035098 // ESC/E(Z) complex // inferred from electronic annotation /// 0045120 // pronucleus // not recorded /// 0045120 // pronucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0042054 // histone methyltransferase activity // not recorded /// 0042054 // histone methyltransferase activity // inferred from electronic annotation 1395698_at AI112563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112563 /DB_XREF=gi:3512512 /DB_XREF=UI-R-Y0-mn-f-10-0-UI.s1 /CLONE=UI-R-Y0-mn-f-10-0-UI /FEA=EST /CNT=5 /TID=Rn.48105.1 /TIER=ConsEnd /STK=0 /UG=Rn.48105 /UG_TITLE=ESTs AI112563 1395699_at BE126478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE126478 /DB_XREF=gi:8549160 /DB_XREF=DEPA0226 /FEA=EST /CNT=5 /TID=Rn.39337.1 /TIER=ConsEnd /STK=0 /UG=Rn.39337 /UG_TITLE=ESTs, Weakly similar to Hypothetical protein 186 (T. acidophilum) (Caenorhabditis elegans) (C.elegans) BE126478 RIO kinase 3 (yeast) Riok3 361293 NM_001108423 0006468 // protein phosphorylation // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1395700_at AA957141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957141 /DB_XREF=gi:4239614 /DB_XREF=UI-R-E1-ge-f-05-0-UI.s1 /CLONE=UI-R-E1-ge-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.32901.1 /TIER=ConsEnd /STK=0 /UG=Rn.32901 /UG_TITLE=ESTs AA957141 DNA cross-link repair 1B, PSO2 homolog (S. cerevisiae) Dclre1b 310745 NM_001025687 0000075 // cell cycle checkpoint // not recorded /// 0000075 // cell cycle checkpoint // inferred from sequence or structural similarity /// 0000723 // telomere maintenance // not recorded /// 0000723 // telomere maintenance // inferred from sequence or structural similarity /// 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0031627 // telomeric loop formation // inferred from sequence or structural similarity /// 0031848 // protection from non-homologous end joining at telomere // not recorded /// 0031848 // protection from non-homologous end joining at telomere // inferred from sequence or structural similarity /// 0031860 // telomeric 3' overhang formation // inferred from sequence or structural similarity 0000781 // chromosome, telomeric region // not recorded /// 0000781 // chromosome, telomeric region // inferred from sequence or structural similarity /// 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008409 // 5'-3' exonuclease activity // not recorded /// 0008409 // 5'-3' exonuclease activity // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation 1395701_at BE118561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118561 /DB_XREF=gi:8510666 /DB_XREF=UI-R-BJ1-azq-b-10-0-UI.s1 /CLONE=UI-R-BJ1-azq-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.33118.1 /TIER=ConsEnd /STK=0 /UG=Rn.33118 /UG_TITLE=ESTs BE118561 Hippocampus abundant transcript-like 1 Hiatl1 306687 NM_001107334 0006810 // transport // inferred from electronic annotation /// 0015904 // tetracycline transport // inferred from electronic annotation /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015520 // tetracycline:hydrogen antiporter activity // inferred from electronic annotation 1395702_at AW522392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522392 /DB_XREF=gi:7164777 /DB_XREF=UI-R-BO0-ahw-e-07-0-UI.s1 /CLONE=UI-R-BO0-ahw-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.35235.1 /TIER=ConsEnd /STK=0 /UG=Rn.35235 /UG_TITLE=ESTs, Weakly similar to IF4G_HUMAN EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA (H.sapiens) AW522392 eukaryotic translation initiation factor 4 gamma, 1 Eif4g1 287986 XM_001060756 /// XM_002724743 /// XM_002727923 /// XM_213569 0006446 // regulation of translational initiation // not recorded /// 0016070 // RNA metabolic process // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0016281 // eukaryotic translation initiation factor 4F complex // inferred from direct assay /// 0016281 // eukaryotic translation initiation factor 4F complex // inferred from mutant phenotype 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008190 // eukaryotic initiation factor 4E binding // inferred from mutant phenotype /// 0008190 // eukaryotic initiation factor 4E binding // inferred from physical interaction 1395703_at H34760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H34760 /DB_XREF=gi:980177 /DB_XREF=EST111975 /CLONE=RPNCP84 /FEA=EST /CNT=4 /TID=Rn.60491.1 /TIER=ConsEnd /STK=0 /UG=Rn.60491 /UG_TITLE=ESTs H34760 1395704_at BF561525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561525 /DB_XREF=gi:11671255 /DB_XREF=UI-R-C0-hw-f-03-0-UI.r1 /CLONE=UI-R-C0-hw-f-03-0-UI /FEA=EST /CNT=4 /TID=Rn.52959.1 /TIER=ConsEnd /STK=0 /UG=Rn.52959 /UG_TITLE=ESTs BF561525 1395705_at BF412848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412848 /DB_XREF=gi:11400837 /DB_XREF=UI-R-BT1-bnu-c-07-0-UI.s1 /CLONE=UI-R-BT1-bnu-c-07-0-UI /FEA=EST /CNT=4 /TID=Rn.27810.1 /TIER=ConsEnd /STK=0 /UG=Rn.27810 /UG_TITLE=ESTs BF412848 1395706_at BF414924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414924 /DB_XREF=gi:11402913 /DB_XREF=UI-R-BJ2-bot-f-04-0-UI.s1 /CLONE=UI-R-BJ2-bot-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.64253.1 /TIER=ConsEnd /STK=0 /UG=Rn.64253 /UG_TITLE=ESTs, Weakly similar to ALS RAT INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN COMPLEX ACID LABILE CHAIN PRECURSOR (R.norvegicus) BF414924 leucine rich repeat and Ig domain containing 1 Lingo1 315691 NM_001100722 0021954 // central nervous system neuron development // inferred from electronic annotation /// 0021954 // central nervous system neuron development // not recorded /// 0031175 // neuron projection development // inferred from electronic annotation /// 0031175 // neuron projection development // not recorded /// 0043491 // protein kinase B signaling cascade // inferred from electronic annotation /// 0043491 // protein kinase B signaling cascade // not recorded /// 0048715 // negative regulation of oligodendrocyte differentiation // inferred from electronic annotation /// 0048715 // negative regulation of oligodendrocyte differentiation // not recorded 0005154 // epidermal growth factor receptor binding // inferred from electronic annotation /// 0005154 // epidermal growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395707_at BG670971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670971 /DB_XREF=gi:13893070 /DB_XREF=DRNBJF07 /CLONE=DRNBJF07 /FEA=EST /CNT=4 /TID=Rn.76540.1 /TIER=ConsEnd /STK=0 /UG=Rn.76540 /UG_TITLE=ESTs BG670971 1395708_at BF288845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288845 /DB_XREF=gi:11219915 /DB_XREF=EST453436 /CLONE=RGIGY60 /FEA=EST /CNT=4 /TID=Rn.55661.1 /TIER=ConsEnd /STK=0 /UG=Rn.55661 /UG_TITLE=ESTs BF288845 1395709_at BG378609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378609 /DB_XREF=gi:13303081 /DB_XREF=UI-R-CV1-bvr-e-05-0-UI.s1 /CLONE=UI-R-CV1-bvr-e-05-0-UI /FEA=EST /CNT=4 /TID=Rn.38690.1 /TIER=ConsEnd /STK=0 /UG=Rn.38690 /UG_TITLE=ESTs, Weakly similar to orphan receptor COUP-TFI (R.norvegicus) BG378609 nuclear receptor subfamily 2, group E, member 3-like LOC100365683 100365683 XM_002727061 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1395710_at BI275003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275003 /DB_XREF=gi:14886448 /DB_XREF=UI-R-CX0-bwt-e-09-0-UI.s1 /CLONE=UI-R-CX0-bwt-e-09-0-UI /FEA=EST /CNT=4 /TID=Rn.39264.1 /TIER=ConsEnd /STK=0 /UG=Rn.39264 /UG_TITLE=ESTs BI275003 mesoderm induction early response 1 homolog (Xenopus laevis) Mier1 313418 NM_001131012 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded 1395711_at AW526713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526713 /DB_XREF=gi:7169127 /DB_XREF=UI-R-BT1-ake-b-11-0-UI.s1 /CLONE=UI-R-BT1-ake-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.46296.1 /TIER=ConsEnd /STK=0 /UG=Rn.46296 /UG_TITLE=ESTs AW526713 1395712_at AI576184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576184 /DB_XREF=gi:4560560 /DB_XREF=UI-R-Y0-ux-a-09-0-UI.s1 /CLONE=UI-R-Y0-ux-a-09-0-UI /FEA=EST /CNT=4 /TID=Rn.38076.1 /TIER=ConsEnd /STK=0 /UG=Rn.38076 /UG_TITLE=ESTs AI576184 serine peptidase inhibitor, Kazal type 5 Spink5 361319 NM_001170606 /// XM_001056195 /// XM_002727265 /// XM_002728544 /// XM_341607 0009913 // epidermal cell differentiation // not recorded /// 0010466 // negative regulation of peptidase activity // not recorded /// 0030155 // regulation of cell adhesion // not recorded /// 0045861 // negative regulation of proteolysis // not recorded 0005576 // extracellular region // not recorded /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005829 // cytosol // not recorded /// 0005938 // cell cortex // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // not recorded /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // not recorded 1395713_at AI136510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136510 /DB_XREF=gi:3637287 /DB_XREF=UI-R-C2p-nq-a-05-0-UI.s1 /CLONE=UI-R-C2p-nq-a-05-0-UI /FEA=EST /CNT=4 /TID=Rn.27154.1 /TIER=ConsEnd /STK=0 /UG=Rn.27154 /UG_TITLE=ESTs AI136510 1395714_at AT005664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AT005664 /DB_XREF=gi:13818659 /DB_XREF=AT005664 /CLONE=73-P7-1(37) /FEA=EST /CNT=4 /TID=Rn.45538.1 /TIER=ConsEnd /STK=0 /UG=Rn.45538 /UG_TITLE=ESTs AT005664 1395715_at BI288113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288113 /DB_XREF=gi:14944376 /DB_XREF=UI-R-DK0-cdc-b-04-0-UI.s1 /CLONE=UI-R-DK0-cdc-b-04-0-UI /FEA=EST /CNT=4 /TID=Rn.35427.1 /TIER=ConsEnd /STK=0 /UG=Rn.35427 /UG_TITLE=ESTs BI288113 Cdc42 GTPase-activating protein Cdgap 288093 NM_001105879 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded 0005096 // GTPase activator activity // not recorded /// 0005515 // protein binding // not recorded /// 0017124 // SH3 domain binding // not recorded 1395716_at AW919386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919386 /DB_XREF=gi:8085180 /DB_XREF=EST350690 /CLONE=RGIFU03 /FEA=EST /CNT=4 /TID=Rn.52916.1 /TIER=ConsEnd /STK=0 /UG=Rn.52916 /UG_TITLE=ESTs, Weakly similar to A60716 somatotropin intron-related protein RDE.25 - rat (R.norvegicus) AW919386 1395717_at BF394620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394620 /DB_XREF=gi:11379537 /DB_XREF=UI-R-CA0-bfx-h-06-0-UI.s1 /CLONE=UI-R-CA0-bfx-h-06-0-UI /FEA=EST /CNT=4 /TID=Rn.41814.1 /TIER=ConsEnd /STK=0 /UG=Rn.41814 /UG_TITLE=ESTs BF394620 1395718_at BE102746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102746 /DB_XREF=gi:8494845 /DB_XREF=UI-R-BT1-aqp-f-09-0-UI.s1 /CLONE=UI-R-BT1-aqp-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.43655.1 /TIER=ConsEnd /STK=0 /UG=Rn.43655 /UG_TITLE=ESTs BE102746 1395719_at AI763950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763950 /DB_XREF=gi:5209885 /DB_XREF=UI-R-Y0-acv-a-09-0-UI.s1 /CLONE=UI-R-Y0-acv-a-09-0-UI /FEA=EST /CNT=4 /TID=Rn.24107.1 /TIER=ConsEnd /STK=0 /UG=Rn.24107 /UG_TITLE=ESTs, Weakly similar to ELONGATION FACTOR 1-ALPHA 1 (R.norvegicus) AI763950 Tu translation elongation factor, mitochondrial Tufm 293481 NM_001106295 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0006414 // translational elongation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0042645 // mitochondrial nucleoid // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0003746 // translation elongation factor activity // not recorded /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1395720_at BE098012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098012 /DB_XREF=gi:8488906 /DB_XREF=UI-R-C4-amc-c-12-0-UI.s1 /CLONE=UI-R-C4-amc-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.48847.1 /TIER=ConsEnd /STK=0 /UG=Rn.48847 /UG_TITLE=ESTs BE098012 1395721_at AW917486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917486 /DB_XREF=gi:8083238 /DB_XREF=EST348790 /CLONE=RGIEE45 /FEA=EST /CNT=3 /TID=Rn.79315.1 /TIER=ConsEnd /STK=0 /UG=Rn.79315 /UG_TITLE=ESTs, Highly similar to PPS2 MOUSE BIFUNCTIONAL 3-PHOSPHOADENOSINE 5-PHOSPHOSULFATE SYNTHETHASE 2 (M.musculus) AW917486 3'-phosphoadenosine 5'-phosphosulfate synthase 2 Papss2 294103 NM_001106375 0000103 // sulfate assimilation // inferred from electronic annotation /// 0000103 // sulfate assimilation // not recorded /// 0007596 // blood coagulation // not recorded /// 0016310 // phosphorylation // not recorded /// 0060348 // bone development // not recorded 0004020 // adenylylsulfate kinase activity // inferred from electronic annotation /// 0004020 // adenylylsulfate kinase activity // not recorded /// 0004781 // sulfate adenylyltransferase (ATP) activity // inferred from electronic annotation /// 0004781 // sulfate adenylyltransferase (ATP) activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation 1395722_at BF288345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288345 /DB_XREF=gi:11219415 /DB_XREF=EST452936 /CLONE=RGIGS66 /FEA=EST /CNT=3 /TID=Rn.55552.1 /TIER=ConsEnd /STK=0 /UG=Rn.55552 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) BF288345 1395723_at BG663439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663439 /DB_XREF=gi:13885361 /DB_XREF=DRAAAJB04 /CLONE=DRAAAJB04 /FEA=EST /CNT=3 /TID=Rn.47805.1 /TIER=ConsEnd /STK=0 /UG=Rn.47805 /UG_TITLE=ESTs, Weakly similar to QQMSLL retrovirus-related leucine zipper protein p40 - mouse retrotransposon (M.musculus) BG663439 hypothetical protein LOC100360470 LOC100360470 100360470 XM_002726862 /// XM_002729751 1395724_at AW144414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144414 /DB_XREF=gi:6164313 /DB_XREF=EST294710 /CLONE=RGICT05 /FEA=EST /CNT=3 /TID=Rn.25400.1 /TIER=ConsEnd /STK=0 /UG=Rn.25400 /UG_TITLE=ESTs AW144414 nurim (nuclear envelope membrane protein) Nrm 361791 NM_212508 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005635 // nuclear envelope // inferred from sequence or structural similarity /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1395725_at BF557088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557088 /DB_XREF=gi:11666818 /DB_XREF=UI-R-E1-go-b-01-0-UI.r1 /CLONE=UI-R-E1-go-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.53770.1 /TIER=ConsEnd /STK=0 /UG=Rn.53770 /UG_TITLE=ESTs BF557088 1395726_at AW143353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143353 /DB_XREF=gi:6163252 /DB_XREF=EST293649 /CLONE=RGIBL42 /FEA=EST /CNT=3 /TID=Rn.46336.1 /TIER=ConsEnd /STK=0 /UG=Rn.46336 /UG_TITLE=ESTs AW143353 1395727_at BF291124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291124 /DB_XREF=gi:11222194 /DB_XREF=EST455715 /CLONE=RGIIJ09 /FEA=EST /CNT=3 /TID=Rn.56040.1 /TIER=ConsEnd /STK=0 /UG=Rn.56040 /UG_TITLE=ESTs, Highly similar to Rab geranylgeranyl transferase, a subunit (Rattus norvegicus) (R.norvegicus) BF291124 Rab geranylgeranyltransferase, alpha subunit Rabggta 58983 NM_031654 0018344 // protein geranylgeranylation // inferred from direct assay /// 0018344 // protein geranylgeranylation // not recorded /// 0018344 // protein geranylgeranylation // inferred from electronic annotation 0004659 // prenyltransferase activity // inferred from electronic annotation /// 0004663 // Rab geranylgeranyltransferase activity // inferred from direct assay /// 0004663 // Rab geranylgeranyltransferase activity // not recorded /// 0004663 // Rab geranylgeranyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008318 // protein prenyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395728_at BF290109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290109 /DB_XREF=gi:11221179 /DB_XREF=EST454700 /CLONE=RGIHN86 /FEA=EST /CNT=3 /TID=Rn.55893.1 /TIER=ConsEnd /STK=0 /UG=Rn.55893 /UG_TITLE=ESTs BF290109 1395729_at BF402821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402821 /DB_XREF=gi:11390796 /DB_XREF=UI-R-CA0-bhh-d-11-0-UI.s1 /CLONE=UI-R-CA0-bhh-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.60088.1 /TIER=ConsEnd /STK=0 /UG=Rn.60088 /UG_TITLE=ESTs BF402821 1395730_at AW507352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW507352 /DB_XREF=gi:8133517 /DB_XREF=EST00068 /CLONE=6thC10 /FEA=EST /CNT=3 /TID=Rn.79723.1 /TIER=ConsEnd /STK=0 /UG=Rn.79723 /UG_TITLE=ESTs, Highly similar to A55314 glycine--tRNA ligase (H.sapiens) AW507352 glycyl-tRNA synthetase /// similar to Glycyl-tRNA synthetase Gars /// RGD1559871 297113 /// 500135 XM_001061006 /// XM_216152 /// XM_575487 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006426 // glycyl-tRNA aminoacylation // inferred from electronic annotation /// 0015966 // diadenosine tetraphosphate biosynthetic process // not recorded /// 0015966 // diadenosine tetraphosphate biosynthetic process // inferred from sequence or structural similarity /// 0015966 // diadenosine tetraphosphate biosynthetic process // inferred from electronic annotation /// 0045055 // regulated secretory pathway // inferred from electronic annotation /// 0045055 // regulated secretory pathway // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // not recorded /// 0005829 // cytosol // not recorded /// 0030141 // stored secretory granule // inferred from electronic annotation /// 0030141 // stored secretory granule // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004820 // glycine-tRNA ligase activity // not recorded /// 0004820 // glycine-tRNA ligase activity // inferred from sequence or structural similarity /// 0004820 // glycine-tRNA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // not recorded /// 0046983 // protein dimerization activity // inferred from sequence or structural similarity /// 0046983 // protein dimerization activity // inferred from electronic annotation 1395731_at BF291205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291205 /DB_XREF=gi:11222275 /DB_XREF=EST455796 /CLONE=RGIIK13 /FEA=EST /CNT=3 /TID=Rn.56055.1 /TIER=ConsEnd /STK=0 /UG=Rn.56055 /UG_TITLE=ESTs BF291205 1395732_at BF567236 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567236 /DB_XREF=gi:11676966 /DB_XREF=UI-R-BO0-aht-d-03-0-UI.r1 /CLONE=UI-R-BO0-aht-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.46571.1 /TIER=ConsEnd /STK=0 /UG=Rn.46571 /UG_TITLE=ESTs BF567236 1395733_at AI717063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717063 /DB_XREF=gi:5034319 /DB_XREF=UI-R-Y0-acu-e-06-0-UI.s1 /CLONE=UI-R-Y0-acu-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.41354.1 /TIER=ConsEnd /STK=0 /UG=Rn.41354 /UG_TITLE=ESTs, Weakly similar to NED4 MOUSE NEDD-4 PROTEIN (M.musculus) AI717063 1395734_at AW919178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919178 /DB_XREF=gi:8084969 /DB_XREF=EST350482 /CLONE=RGIFD74 /FEA=EST /CNT=3 /TID=Rn.62636.1 /TIER=ConsEnd /STK=0 /UG=Rn.62636 /UG_TITLE=ESTs, Weakly similar to AKA2_HUMAN A KINASE ANCHOR PROTEIN 2 (PROTEIN KINASE A ANCHORING PROTEIN 2) (PRKA2) (H.sapiens) AW919178 palmdelphin Palmd 310811 NM_001025688 0008360 // regulation of cell shape // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1395735_at BF566525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF566525 /DB_XREF=gi:11676255 /DB_XREF=UI-R-BO0-agm-d-10-0-UI.r1 /CLONE=UI-R-BO0-agm-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.43143.1 /TIER=ConsEnd /STK=0 /UG=Rn.43143 /UG_TITLE=ESTs, Weakly similar to PHP DROME POLYHOMEOTIC-PROXIMAL CHROMATIN PROTEIN (D.melanogaster) BF566525 Similar to hypothetical protein MGC45873 RGD1310271 313778 XM_233727 1395736_at BG666455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666455 /DB_XREF=gi:13888377 /DB_XREF=DRA06G04 /CLONE=DRA06G04 /FEA=EST /CNT=3 /TID=Rn.45700.1 /TIER=ConsEnd /STK=0 /UG=Rn.45700 /UG_TITLE=ESTs BG666455 dual serine/threonine and tyrosine protein kinase Dstyk 304791 NM_199463 0006468 // protein phosphorylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1395737_at AW143901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143901 /DB_XREF=gi:6163800 /DB_XREF=EST294197 /CLONE=RGICC53 /FEA=EST /CNT=3 /TID=Rn.76129.1 /TIER=ConsEnd /STK=0 /UG=Rn.76129 /UG_TITLE=ESTs AW143901 Cd276 molecule Cd276 315716 NM_182824 0030501 // positive regulation of bone mineralization // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // not recorded /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0042110 // T cell activation // inferred from electronic annotation /// 0042110 // T cell activation // not recorded /// 0042130 // negative regulation of T cell proliferation // inferred from electronic annotation /// 0042130 // negative regulation of T cell proliferation // not recorded /// 0045077 // negative regulation of interferon-gamma biosynthetic process // inferred from electronic annotation /// 0045077 // negative regulation of interferon-gamma biosynthetic process // not recorded /// 0045078 // positive regulation of interferon-gamma biosynthetic process // inferred from electronic annotation /// 0045078 // positive regulation of interferon-gamma biosynthetic process // not recorded /// 0045085 // negative regulation of interleukin-2 biosynthetic process // inferred from electronic annotation /// 0045085 // negative regulation of interleukin-2 biosynthetic process // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // not recorded /// 0050776 // regulation of immune response // inferred from electronic annotation /// 0050776 // regulation of immune response // not recorded 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1395738_at AW143035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143035 /DB_XREF=gi:6162934 /DB_XREF=EST293330 /CLONE=RGIBC12 /FEA=EST /CNT=3 /TID=Rn.60732.1 /TIER=ConsEnd /STK=0 /UG=Rn.60732 /UG_TITLE=ESTs AW143035 1395739_at BG672302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672302 /DB_XREF=gi:13894401 /DB_XREF=DRNCFB08 /CLONE=DRNCFB08 /FEA=EST /CNT=3 /TID=Rn.65010.1 /TIER=ConsEnd /STK=0 /UG=Rn.65010 /UG_TITLE=ESTs, Highly similar to Y143_HUMAN HYPOTHETICAL PROTEIN KIAA0143 (H.sapiens) BG672302 EFR3 homolog A (S. cerevisiae) Efr3a 362923 NM_001130564 0005622 // intracellular // not recorded /// 0005886 // plasma membrane // not recorded 0005488 // binding // inferred from electronic annotation 1395740_at BE118705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118705 /DB_XREF=gi:8510810 /DB_XREF=UI-R-BS1-azr-g-07-0-UI.s1 /CLONE=UI-R-BS1-azr-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.51439.1 /TIER=ConsEnd /STK=0 /UG=Rn.51439 /UG_TITLE=ESTs BE118705 1395741_at BF548107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548107 /DB_XREF=gi:11639214 /DB_XREF=UI-R-A0-bf-b-01-0-UI.r1 /CLONE=UI-R-A0-bf-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.63923.1 /TIER=ConsEnd /STK=0 /UG=Rn.63923 /UG_TITLE=ESTs BF548107 Meningioma expressed antigen 5 (hyaluronidase) Mgea5 154968 NM_131904 0006044 // N-acetylglucosamine metabolic process // inferred from mutant phenotype /// 0006612 // protein targeting to membrane // inferred from mutant phenotype /// 0007568 // aging // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0010524 // positive regulation of calcium ion transport into cytosol // inferred from mutant phenotype /// 0010616 // negative regulation of cardiac muscle adaptation // inferred from mutant phenotype /// 0031343 // positive regulation of cell killing // inferred from mutant phenotype /// 0032024 // positive regulation of insulin secretion // inferred from mutant phenotype /// 0043243 // positive regulation of protein complex disassembly // inferred from mutant phenotype /// 0045862 // positive regulation of proteolysis // inferred from mutant phenotype /// 0046060 // dATP metabolic process // inferred from mutant phenotype /// 0046326 // positive regulation of glucose import // inferred from mutant phenotype /// 0048545 // response to steroid hormone stimulus // inferred from expression pattern /// 0051054 // positive regulation of DNA metabolic process // inferred from mutant phenotype /// 0051901 // positive regulation of mitochondrial depolarization // inferred from mutant phenotype /// 0051928 // positive regulation of calcium ion transport // inferred from mutant phenotype /// 0060051 // negative regulation of protein glycosylation // inferred from mutant phenotype /// 0060124 // positive regulation of growth hormone secretion // inferred from mutant phenotype /// 0070265 // necrotic cell death // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from mutant phenotype /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004563 // beta-N-acetylhexosaminidase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016231 // beta-N-acetylglucosaminidase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation 1395742_at AW920352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920352 /DB_XREF=gi:8086161 /DB_XREF=EST351656 /CLONE=RGIGU50 /FEA=EST /CNT=3 /TID=Rn.55610.1 /TIER=ConsEnd /STK=0 /UG=Rn.55610 /UG_TITLE=ESTs AW920352 1395743_at BF522730 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522730 /DB_XREF=gi:11630697 /DB_XREF=UI-R-Y0-uv-c-09-0-UI.r1 /CLONE=UI-R-Y0-uv-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.63762.1 /TIER=ConsEnd /STK=0 /UG=Rn.63762 /UG_TITLE=ESTs BF522730 1395744_at BF291140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291140 /DB_XREF=gi:11222210 /DB_XREF=EST455731 /CLONE=RGIIJ26 /FEA=EST /CNT=3 /TID=Rn.56044.1 /TIER=ConsEnd /STK=0 /UG=Rn.56044 /UG_TITLE=ESTs BF291140 1395745_at AI113308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113308 /DB_XREF=gi:3513257 /DB_XREF=UI-R-C2p-nr-c-11-0-UI.s1 /CLONE=UI-R-C2p-nr-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.72392.1 /TIER=ConsEnd /STK=0 /UG=Rn.72392 /UG_TITLE=ESTs AI113308 1395746_at BG666635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666635 /DB_XREF=gi:13888557 /DB_XREF=DRABRA11 /CLONE=DRABRA11 /FEA=EST /CNT=3 /TID=Rn.27932.1 /TIER=ConsEnd /STK=0 /UG=Rn.27932 /UG_TITLE=ESTs BG666635 1395747_at AT003319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AT003319 /DB_XREF=gi:10611863 /DB_XREF=AT003319 /CLONE=26-P18-10 /FEA=EST /CNT=3 /TID=Rn.56932.1 /TIER=ConsEnd /STK=0 /UG=Rn.56932 /UG_TITLE=ESTs AT003319 1395748_at AW528866 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528866 /DB_XREF=gi:7171280 /DB_XREF=UI-R-BT1-akj-e-07-0-UI.s1 /CLONE=UI-R-BT1-akj-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.47033.1 /TIER=ConsEnd /STK=0 /UG=Rn.47033 /UG_TITLE=ESTs AW528866 1395749_at BE104663 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104663 /DB_XREF=gi:8496763 /DB_XREF=UI-R-BX0-ars-a-11-0-UI.s1 /CLONE=UI-R-BX0-ars-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.50666.1 /TIER=ConsEnd /STK=0 /UG=Rn.50666 /UG_TITLE=ESTs BE104663 1395750_at AI136722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136722 /DB_XREF=gi:3637499 /DB_XREF=UI-R-C2p-nw-c-10-0-UI.s1 /CLONE=UI-R-C2p-nw-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.27222.1 /TIER=ConsEnd /STK=0 /UG=Rn.27222 /UG_TITLE=ESTs AI136722 1395751_at AI501450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501450 /DB_XREF=gi:4399301 /DB_XREF=UI-R-C2p-sb-c-08-0-UI.s1 /CLONE=UI-R-C2p-sb-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.35941.1 /TIER=ConsEnd /STK=0 /UG=Rn.35941 /UG_TITLE=ESTs AI501450 1395752_at BF398031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398031 /DB_XREF=gi:11383016 /DB_XREF=UI-R-BS2-beg-e-05-0-UI.s1 /CLONE=UI-R-BS2-beg-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.54322.1 /TIER=ConsEnd /STK=0 /UG=Rn.54322 /UG_TITLE=ESTs BF398031 1395753_at BI274506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274506 /DB_XREF=gi:14885477 /DB_XREF=UI-R-CW0-bwj-f-07-0-UI.s1 /CLONE=UI-R-CW0-bwj-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.79980.1 /TIER=ConsEnd /STK=0 /UG=Rn.79980 /UG_TITLE=ESTs BI274506 elastin Eln 25043 NM_012722 0001974 // blood vessel remodeling // inferred from direct assay /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0030198 // extracellular matrix organization // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded /// 0030833 // regulation of actin filament polymerization // inferred from electronic annotation /// 0030833 // regulation of actin filament polymerization // not recorded /// 0043149 // stress fiber assembly // inferred from electronic annotation /// 0043149 // stress fiber assembly // not recorded /// 0048251 // elastic fiber assembly // traceable author statement 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005626 // insoluble fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005201 // extracellular matrix structural constituent // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030023 // extracellular matrix constituent conferring elasticity // inferred from mutant phenotype /// 0050840 // extracellular matrix binding // inferred from electronic annotation /// 0050840 // extracellular matrix binding // not recorded 1395754_at AA998594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998594 /DB_XREF=gi:4290930 /DB_XREF=UI-R-C0-if-h-10-0-UI.s1 /CLONE=UI-R-C0-if-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.63994.1 /TIER=ConsEnd /STK=0 /UG=Rn.63994 /UG_TITLE=ESTs AA998594 Fras1 related extracellular matrix protein 2 Frem2 310418 XM_001057556 /// XM_227142 0002009 // morphogenesis of an epithelium // not recorded /// 0007154 // cell communication // inferred from electronic annotation 0005604 // basement membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded 1395755_at BI294237 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294237 /DB_XREF=gi:14956505 /DB_XREF=UI-R-DK0-cea-c-09-0-UI.s1 /CLONE=UI-R-DK0-cea-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.45522.1 /TIER=ConsEnd /STK=0 /UG=Rn.45522 /UG_TITLE=ESTs BI294237 1395756_at BF288921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288921 /DB_XREF=gi:11219991 /DB_XREF=EST453512 /CLONE=RGIGZ38 /FEA=EST /CNT=3 /TID=Rn.55678.1 /TIER=ConsEnd /STK=0 /UG=Rn.55678 /UG_TITLE=ESTs, Moderately similar to T43482 hypothetical protein DKFZp434F216.1 (H.sapiens) BF288921 1395757_at AW529878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529878 /DB_XREF=gi:7172292 /DB_XREF=UI-R-BO1-ajq-c-10-0-UI.s1 /CLONE=UI-R-BO1-ajq-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.61134.1 /TIER=ConsEnd /STK=0 /UG=Rn.61134 /UG_TITLE=ESTs AW529878 1395758_at AI548569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548569 /DB_XREF=gi:4466057 /DB_XREF=UI-R-C3-td-a-08-0-UI.s1 /CLONE=UI-R-C3-td-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.41698.1 /TIER=ConsEnd /STK=0 /UG=Rn.41698 /UG_TITLE=ESTs, Weakly similar to T02673 heterogeneous nuclear ribonucleoprotein R (H.sapiens) AI548569 synaptotagmin binding, cytoplasmic RNA interacting protein Syncrip 363113 NM_001047916 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0070934 // CRD-mediated mRNA stabilization // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0070937 // CRD-mediated mRNA stability complex // not recorded /// 0070937 // CRD-mediated mRNA stability complex // inferred from sequence or structural similarity /// 0071204 // histone pre-mRNA 3'end processing complex // not recorded /// 0071204 // histone pre-mRNA 3'end processing complex // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008143 // poly(A) RNA binding // not recorded 1395759_at AI556251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556251 /DB_XREF=gi:4488614 /DB_XREF=UI-R-C2p-rf-c-09-0-UI.s1 /CLONE=UI-R-C2p-rf-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.27198.1 /TIER=ConsEnd /STK=0 /UG=Rn.27198 /UG_TITLE=ESTs AI556251 1395760_at BF552848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552848 /DB_XREF=gi:11662578 /DB_XREF=UI-R-C2-nm-h-06-0-UI.r1 /CLONE=UI-R-C2-nm-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.40504.1 /TIER=ConsEnd /STK=0 /UG=Rn.40504 /UG_TITLE=ESTs BF552848 1395761_at AW920270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920270 /DB_XREF=gi:8086079 /DB_XREF=EST351574 /CLONE=RGIGT26 /FEA=EST /CNT=3 /TID=Rn.72564.1 /TIER=ConsEnd /STK=0 /UG=Rn.72564 /UG_TITLE=ESTs AW920270 1395762_at BG670091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670091 /DB_XREF=gi:13892190 /DB_XREF=DRNAAPE01 /CLONE=DRNAAPE01 /FEA=EST /CNT=3 /TID=Rn.72606.1 /TIER=ConsEnd /STK=0 /UG=Rn.72606 /UG_TITLE=ESTs BG670091 1395763_at BE101696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101696 /DB_XREF=gi:8493794 /DB_XREF=UI-R-BO1-aps-b-07-0-UI.s1 /CLONE=UI-R-BO1-aps-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.47939.1 /TIER=ConsEnd /STK=0 /UG=Rn.47939 /UG_TITLE=ESTs BE101696 1395764_at BF398145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398145 /DB_XREF=gi:11383131 /DB_XREF=UI-R-BS2-bem-h-07-0-UI.s1 /CLONE=UI-R-BS2-bem-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.58986.1 /TIER=ConsEnd /STK=0 /UG=Rn.58986 /UG_TITLE=ESTs BF398145 1395765_at BF546899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546899 /DB_XREF=gi:11638006 /DB_XREF=UI-R-C0-jc-f-04-0-UI.r1 /CLONE=UI-R-C0-jc-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.53946.1 /TIER=ConsEnd /STK=0 /UG=Rn.53946 /UG_TITLE=ESTs BF546899 similar to RIKEN cDNA 6330406I15 RGD1307396 360757 XM_001059692 /// XM_341029 1395766_at BM391518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391518 /DB_XREF=gi:18191571 /DB_XREF=UI-R-DY0-ckr-g-20-0-UI.s1 /CLONE=UI-R-DY0-ckr-g-20-0-UI /FEA=EST /CNT=3 /TID=Rn.54855.1 /TIER=ConsEnd /STK=0 /UG=Rn.54855 /UG_TITLE=ESTs BM391518 1395767_at BF560281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF560281 /DB_XREF=gi:11670011 /DB_XREF=UI-R-E1-gi-g-05-0-UI.r1 /CLONE=UI-R-E1-gi-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.72726.1 /TIER=ConsEnd /STK=0 /UG=Rn.72726 /UG_TITLE=ESTs, Highly similar to CST1_HUMAN CLEAVAGE STIMULATION FACTOR, 50 KD SUBUNIT (H.sapiens) BF560281 cleavage stimulation factor, 3' pre-RNA, subunit 1 Cstf1 311670 NM_001013161 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395768_at BG378085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378085 /DB_XREF=gi:13302557 /DB_XREF=UI-R-CT0-bvn-g-01-0-UI.s1 /CLONE=UI-R-CT0-bvn-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.66538.1 /TIER=ConsEnd /STK=0 /UG=Rn.66538 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) BG378085 1395769_at BE105421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105421 /DB_XREF=gi:8497523 /DB_XREF=UI-R-BO1-asn-e-11-0-UI.s1 /CLONE=UI-R-BO1-asn-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.50768.1 /TIER=ConsEnd /STK=0 /UG=Rn.50768 /UG_TITLE=ESTs BE105421 1395770_at BM391695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391695 /DB_XREF=gi:18191748 /DB_XREF=UI-R-CN1-cjs-h-20-0-UI.s1 /CLONE=UI-R-CN1-cjs-h-20-0-UI /FEA=EST /CNT=3 /TID=Rn.65052.1 /TIER=ConsEnd /STK=0 /UG=Rn.65052 /UG_TITLE=ESTs BM391695 1395771_at BF288181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288181 /DB_XREF=gi:11219251 /DB_XREF=EST452772 /CLONE=RGIGQ52 /FEA=EST /CNT=3 /TID=Rn.55515.1 /TIER=ConsEnd /STK=0 /UG=Rn.55515 /UG_TITLE=ESTs BF288181 1395772_at BF290181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290181 /DB_XREF=gi:11221251 /DB_XREF=EST454772 /CLONE=RGIHT39 /FEA=EST /CNT=3 /TID=Rn.29347.1 /TIER=ConsEnd /STK=0 /UG=Rn.29347 /UG_TITLE=ESTs BF290181 1395773_at BF288487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288487 /DB_XREF=gi:11219557 /DB_XREF=EST453078 /CLONE=RGIGU29 /FEA=EST /CNT=3 /TID=Rn.65710.1 /TIER=ConsEnd /STK=0 /UG=Rn.65710 /UG_TITLE=ESTs BF288487 1395774_at BF566655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF566655 /DB_XREF=gi:11676385 /DB_XREF=UI-R-BJ0-aeu-f-01-0-UI.r1 /CLONE=UI-R-BJ0-aeu-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.64215.1 /TIER=ConsEnd /STK=0 /UG=Rn.64215 /UG_TITLE=ESTs BF566655 G protein-coupled receptor 153 Gpr153 619550 NM_001034855 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1395775_at BF391800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391800 /DB_XREF=gi:11376655 /DB_XREF=UI-R-CA1-bcu-f-06-0-UI.s1 /CLONE=UI-R-CA1-bcu-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.28787.1 /TIER=ConsEnd /STK=0 /UG=Rn.28787 /UG_TITLE=ESTs BF391800 1395776_at BF396580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396580 /DB_XREF=gi:11381554 /DB_XREF=UI-R-BS2-bdz-g-05-0-UI.s1 /CLONE=UI-R-BS2-bdz-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.62780.1 /TIER=ConsEnd /STK=0 /UG=Rn.62780 /UG_TITLE=ESTs BF396580 1395777_at BF409664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409664 /DB_XREF=gi:11397639 /DB_XREF=UI-R-CA1-bln-b-12-0-UI.s1 /CLONE=UI-R-CA1-bln-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.46634.1 /TIER=ConsEnd /STK=0 /UG=Rn.46634 /UG_TITLE=ESTs BF409664 1395778_at AW251694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251694 /DB_XREF=gi:6595285 /DB_XREF=UI-R-BJ0-adp-g-09-0-UI.s1 /CLONE=UI-R-BJ0-adp-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.41068.1 /TIER=ConsEnd /STK=0 /UG=Rn.41068 /UG_TITLE=ESTs AW251694 centrosomal protein 72kDa Cep72 308064 XM_001056326 /// XM_217737 0007051 // spindle organization // not recorded /// 0033566 // gamma-tubulin complex localization // not recorded 0005813 // centrosome // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1395779_at BF523321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523321 /DB_XREF=gi:11631288 /DB_XREF=UI-R-G0-ue-e-06-0-UI.r1 /CLONE=UI-R-G0-ue-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.43012.1 /TIER=ConsEnd /STK=0 /UG=Rn.43012 /UG_TITLE=ESTs BF523321 1395780_at BF563384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563384 /DB_XREF=gi:11673114 /DB_XREF=UI-R-BO1-aiw-c-01-0-UI.r1 /CLONE=UI-R-BO1-aiw-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.64143.1 /TIER=ConsEnd /STK=0 /UG=Rn.64143 /UG_TITLE=ESTs BF563384 1395781_at BI300996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300996 /DB_XREF=gi:14977276 /DB_XREF=UI-R-DK0-cfk-g-03-0-UI.s2 /CLONE=UI-R-DK0-cfk-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.41400.1 /TIER=ConsEnd /STK=0 /UG=Rn.41400 /UG_TITLE=ESTs BI300996 V-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian) Mycl1 298506 NM_001191763 /// XM_001054123 /// XM_233490 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation 1395782_at AW921463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921463 /DB_XREF=gi:8087287 /DB_XREF=EST352767 /CLONE=RGIHX29 /FEA=EST /CNT=3 /TID=Rn.13918.2 /TIER=ConsEnd /STK=0 /UG=Rn.13918 /UG_TITLE=ESTs, Weakly similar to AF9_HUMAN AF-9 PROTEIN (H.sapiens) AW921463 YEATS domain containing 4 Yeats4 299810 NM_001127527 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0043967 // histone H4 acetylation // inferred from electronic annotation /// 0043967 // histone H4 acetylation // not recorded /// 0043968 // histone H2A acetylation // inferred from electronic annotation /// 0043968 // histone H2A acetylation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0035267 // NuA4 histone acetyltransferase complex // inferred from electronic annotation /// 0035267 // NuA4 histone acetyltransferase complex // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded 1395783_at AI454003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454003 /DB_XREF=gi:4290682 /DB_XREF=UI-R-BT0-qa-a-03-0-UI.s1 /CLONE=UI-R-BT0-qa-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.34563.1 /TIER=ConsEnd /STK=0 /UG=Rn.34563 /UG_TITLE=ESTs AI454003 1395784_at BF287979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287979 /DB_XREF=gi:11219049 /DB_XREF=EST452570 /CLONE=RGIGN53 /FEA=EST /CNT=3 /TID=Rn.29187.1 /TIER=ConsEnd /STK=0 /UG=Rn.29187 /UG_TITLE=ESTs BF287979 1395785_at BE105453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105453 /DB_XREF=gi:8497555 /DB_XREF=UI-R-BO1-asn-h-10-0-UI.s1 /CLONE=UI-R-BO1-asn-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.52031.1 /TIER=ConsEnd /STK=0 /UG=Rn.52031 /UG_TITLE=ESTs BE105453 1395786_at BE126851 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE126851 /DB_XREF=gi:8549548 /DB_XREF=DEPA0599 /FEA=EST /CNT=3 /TID=Rn.57787.1 /TIER=ConsEnd /STK=0 /UG=Rn.57787 /UG_TITLE=ESTs, Weakly similar to A48205 All-1 protein +GTE form - mouse (M.musculus) BE126851 myeloid/lymphoid or mixed-lineage leukemia 4 Mll4 361543 XM_002728730 /// XM_341829 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395787_at BF542666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542666 /DB_XREF=gi:11633773 /DB_XREF=UI-R-C3-sm-d-09-0-UI.r1 /CLONE=UI-R-C3-sm-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.41912.1 /TIER=ConsEnd /STK=0 /UG=Rn.41912 /UG_TITLE=ESTs, Highly similar to PAPG_HUMAN Poly(A) polymerase gamma (PAP gamma) (Polynucleotide adenylyltransferase gamma) (SRP RNA 3 adenylating enzyme) (H.sapiens) BF542666 poly(A) polymerase gamma Papolg 305586 NM_001107244 0006350 // transcription // inferred from electronic annotation /// 0031123 // RNA 3'-end processing // inferred from electronic annotation /// 0043631 // RNA polyadenylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0004652 // polynucleotide adenylyltransferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1395788_at BF392117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392117 /DB_XREF=gi:11376974 /DB_XREF=UI-R-CA0-bfe-d-09-0-UI.s1 /CLONE=UI-R-CA0-bfe-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.57702.1 /TIER=ConsEnd /STK=0 /UG=Rn.57702 /UG_TITLE=ESTs BF392117 1395789_at BM958510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM958510 /DB_XREF=gi:19541940 /DB_XREF=EST /FEA=EST /CNT=3 /TID=Rn.64211.1 /TIER=ConsEnd /STK=0 /UG=Rn.64211 /UG_TITLE=ESTs BM958510 1395790_at BF409032 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409032 /DB_XREF=gi:11397007 /DB_XREF=UI-R-BT1-bkl-b-12-0-UI.s1 /CLONE=UI-R-BT1-bkl-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.49046.1 /TIER=ConsEnd /STK=0 /UG=Rn.49046 /UG_TITLE=ESTs, Weakly similar to S41647 zinc finger 5 protein - mouse (M.musculus) BF409032 zinc finger and BTB domain containing 33 Zbtb33 501506 NM_001109314 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395791_at BF287167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287167 /DB_XREF=gi:11218237 /DB_XREF=EST451758 /CLONE=RGIFZ68 /FEA=EST /CNT=3 /TID=Rn.41197.2 /TIER=ConsEnd /STK=0 /UG=Rn.41197 /UG_TITLE=ESTs, Weakly similar to YNA4_CAEEL HYPOTHETICAL 91.0 KD PROTEIN PAR2.4 IN CHROMOSOME III (C.elegans) BF287167 similar to mKIAA1402 protein RGD1306404 296733 NM_001106574 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1395792_at AI549034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549034 /DB_XREF=gi:4466522 /DB_XREF=UI-R-C3-tv-f-12-0-UI.s1 /CLONE=UI-R-C3-tv-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.41780.1 /TIER=ConsEnd /STK=0 /UG=Rn.41780 /UG_TITLE=ESTs AI549034 1395793_at AW534384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534384 /DB_XREF=gi:7176798 /DB_XREF=UI-R-C4-alo-h-05-0-UI.s1 /CLONE=UI-R-C4-alo-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.48322.1 /TIER=ConsEnd /STK=0 /UG=Rn.48322 /UG_TITLE=ESTs AW534384 1395794_at BF395218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395218 /DB_XREF=gi:11380183 /DB_XREF=UI-R-CM0-bjl-d-01-0-UI.s1 /CLONE=UI-R-CM0-bjl-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.49231.1 /TIER=ConsEnd /STK=0 /UG=Rn.49231 /UG_TITLE=ESTs, Moderately similar to A34787 tropomyosin 1 alpha, brain - rat (R.norvegicus) BF395218 tropomyosin 1, alpha Tpm1 24851 NM_001034068 /// NM_001034069 /// NM_001034070 /// NM_001034071 /// NM_001034072 /// NM_001034073 /// NM_001034074 /// NM_001034075 /// NM_019131 0001701 // in utero embryonic development // inferred from electronic annotation /// 0006936 // muscle contraction // traceable author statement /// 0009790 // embryo development // inferred from electronic annotation /// 0030049 // muscle filament sliding // inferred from direct assay /// 0030336 // negative regulation of cell migration // inferred from genetic interaction /// 0031529 // ruffle organization // inferred from genetic interaction /// 0032781 // positive regulation of ATPase activity // inferred from mutant phenotype /// 0032781 // positive regulation of ATPase activity // inferred from direct assay /// 0042060 // wound healing // inferred from genetic interaction /// 0045785 // positive regulation of cell adhesion // inferred from genetic interaction /// 0051496 // positive regulation of stress fiber assembly // inferred from genetic interaction /// 0051693 // actin filament capping // inferred from direct assay /// 0060048 // cardiac muscle contraction // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030016 // myofibril // inferred from electronic annotation /// 0030018 // Z disc // inferred from mutant phenotype /// 0031941 // filamentous actin // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0003779 // actin binding // inferred from mutant phenotype /// 0003779 // actin binding // traceable author statement /// 0003779 // actin binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0047485 // protein N-terminus binding // inferred from direct assay /// 0051015 // actin filament binding // inferred from mutant phenotype 1395795_at AW528651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528651 /DB_XREF=gi:7171065 /DB_XREF=UI-R-BO1-ajr-g-11-0-UI.s1 /CLONE=UI-R-BO1-ajr-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.46957.1 /TIER=ConsEnd /STK=0 /UG=Rn.46957 /UG_TITLE=ESTs AW528651 1395796_at AI103143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103143 /DB_XREF=gi:3707718 /DB_XREF=EST212432 /CLONE=REMBX71 /FEA=EST /CNT=3 /TID=Rn.23923.1 /TIER=ConsEnd /STK=0 /UG=Rn.23923 /UG_TITLE=ESTs AI103143 intermediate filament family orphan 2 Iffo2 641315 NM_001134703 1395797_at AW920669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920669 /DB_XREF=gi:8086482 /DB_XREF=EST351973 /CLONE=RGIHA76 /FEA=EST /CNT=3 /TID=Rn.65869.1 /TIER=ConsEnd /STK=0 /UG=Rn.65869 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) AW920669 1395798_at BF388518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388518 /DB_XREF=gi:11373342 /DB_XREF=UI-R-CA1-bda-e-01-0-UI.s1 /CLONE=UI-R-CA1-bda-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.33784.1 /TIER=ConsEnd /STK=0 /UG=Rn.33784 /UG_TITLE=ESTs BF388518 1395799_at AI177767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177767 /DB_XREF=gi:3728405 /DB_XREF=EST221410 /CLONE=RPLCF95 /FEA=EST /CNT=3 /TID=Rn.37673.1 /TIER=ConsEnd /STK=0 /UG=Rn.37673 /UG_TITLE=ESTs, Weakly similar to EPIDERMAL GROWTH FACTOR RECEPTOR SUBSTRATE SUBSTRATE 15 (M.musculus) AI177767 intersectin 2 Itsn2 313934 XM_001067254 /// XM_002730131 /// XM_002730132 /// XM_233945 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395800_at BE120374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120374 /DB_XREF=gi:8512479 /DB_XREF=UI-R-CA0-baq-f-10-0-UI.s1 /CLONE=UI-R-CA0-baq-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.46555.1 /TIER=ConsEnd /STK=0 /UG=Rn.46555 /UG_TITLE=ESTs BE120374 1395801_at BF547185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547185 /DB_XREF=gi:11638292 /DB_XREF=UI-R-C1-lb-e-08-0-UI.r1 /CLONE=UI-R-C1-lb-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.64427.1 /TIER=ConsEnd /STK=0 /UG=Rn.64427 /UG_TITLE=ESTs BF547185 serologically defined colon cancer antigen 8 Sdccag8 305002 NM_177929 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005829 // cytosol // not recorded 1395802_at BF419095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419095 /DB_XREF=gi:11407084 /DB_XREF=UI-R-BJ2-bqn-e-03-0-UI.s1 /CLONE=UI-R-BJ2-bqn-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.66686.1 /TIER=ConsEnd /STK=0 /UG=Rn.66686 /UG_TITLE=ESTs, Moderately similar to Y079_HUMAN HYPOTHETICAL PROTEIN KIAA0079 (H.sapiens) BF419095 SEC24 related gene family, member C (S. cerevisiae) Sec24c 685144 NM_001109456 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded 0030127 // COPII vesicle coat // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1395803_at AA996790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996790 /DB_XREF=gi:4280554 /DB_XREF=UI-R-C0-hh-f-10-0-UI.s1 /CLONE=UI-R-C0-hh-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.76520.1 /TIER=ConsEnd /STK=0 /UG=Rn.76520 /UG_TITLE=ESTs AA996790 1395804_at BE109618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109618 /DB_XREF=gi:8501723 /DB_XREF=UI-R-BJ1-avq-c-01-0-UI.s1 /CLONE=UI-R-BJ1-avq-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.51731.1 /TIER=ConsEnd /STK=0 /UG=Rn.51731 /UG_TITLE=ESTs BE109618 Similar to RIKEN cDNA 4933406L09 LOC361016 361016 NM_001014137 1395805_at BF552903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552903 /DB_XREF=gi:11662633 /DB_XREF=UI-R-C2-mz-d-09-0-UI.r1 /CLONE=UI-R-C2-mz-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.54324.1 /TIER=ConsEnd /STK=0 /UG=Rn.54324 /UG_TITLE=ESTs, Weakly similar to TESTIN 2 (M.musculus) BF552903 prickle homolog 1 (Drosophila) Prickle1 315259 NM_199396 0006606 // protein import into nucleus // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395806_at AI547628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547628 /DB_XREF=gi:4465116 /DB_XREF=UI-R-C3-sz-e-01-0-UI.s1 /CLONE=UI-R-C3-sz-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.41822.1 /TIER=ConsEnd /STK=0 /UG=Rn.41822 /UG_TITLE=ESTs AI547628 spermatogenesis associated glutamate (E)-rich protein 4e-like /// hypothetical LOC367500 /// hypothetical LOC501349 /// hypothetical LOC501373 /// similar to RIKEN cDNA 5031410I06 /// similar to spermatogenesis associated glutamate (E)-rich protein 4d /// hypothetical protein LOC681299 /// hypothetical protein LOC686147 /// similar to spermatogenesis associated glutamate (E)-rich protein 4d /// similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) /// similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) /// hypothetical protein LOC689084 /// hypothetical protein LOC689225 /// similar to RIKEN cDNA 5031410I06 /// similar to spermatogenesis associated glutamate (E)-rich protein 4d /// hypothetical protein LOC689867 /// similar to spermatogenesis associated glutamate (E)-rich protein 4d /// hypothetical protein LOC689983 /// hypothetical protein LOC690256 /// similar to spermatogenesis associated glutamate (E)-rich protein 4d /// hypothetical protein LOC690565 /// similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) /// hypothetical protein LOC690947 /// similar to RIKEN cDNA 5031410I06 /// similar to spermatogenesis associated glutamate (E)-rich protein 4d /// similar to spermatogenesis associated glutamate (E)-rich protein 4d /// similar to RIKEN cDNA 5031410I06 LOC100360315 /// LOC367500 /// LOC501349 /// LOC501373 /// LOC679785 /// LOC680185 /// LOC681299 /// LOC686147 /// LOC688560 /// LOC688991 /// LOC689083 /// LOC689084 /// LOC689225 /// LOC689338 /// LOC689690 /// LOC689867 /// LOC689870 /// LOC689983 /// LOC690256 /// LOC690379 /// LOC690565 /// LOC690867 /// LOC690947 /// LOC690977 /// LOC691627 /// LOC691712 /// LOC691735 100360315 /// 367500 /// 501349 /// 501373 /// 679785 /// 680185 /// 681299 /// 686147 /// 688560 /// 688991 /// 689083 /// 689084 /// 689225 /// 689338 /// 689690 /// 689867 /// 689870 /// 689983 /// 690256 /// 690379 /// 690565 /// 690867 /// 690947 /// 690977 /// 691627 /// 691712 /// 691735 XM_001055390 /// XM_001056044 /// XM_001058891 /// XM_001060593 /// XM_001061128 /// XM_001066698 /// XM_001067419 /// XM_001069078 /// XM_001069448 /// XM_001070040 /// XM_001070438 /// XM_001072316 /// XM_001072797 /// XM_001073636 /// XM_001073870 /// XM_001074284 /// XM_001074825 /// XM_001075937 /// XM_001076268 /// XM_001076377 /// XM_001079070 /// XM_001079351 /// XM_001079430 /// XM_002727316 /// XM_002728586 /// XM_002730116 /// XM_346174 /// XM_576760 /// XM_576786 0019028 // viral capsid // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 1395807_at BF403149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403149 /DB_XREF=gi:11391124 /DB_XREF=UI-R-CA0-bhs-b-11-0-UI.s1 /CLONE=UI-R-CA0-bhs-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.60208.1 /TIER=ConsEnd /STK=0 /UG=Rn.60208 /UG_TITLE=ESTs BF403149 1395808_at AI137122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137122 /DB_XREF=gi:3637899 /DB_XREF=UI-R-C2p-oe-e-11-0-UI.s1 /CLONE=UI-R-C2p-oe-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.27322.1 /TIER=ConsEnd /STK=0 /UG=Rn.27322 /UG_TITLE=ESTs AI137122 1395809_at AI104331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104331 /DB_XREF=gi:3708702 /DB_XREF=EST213620 /CLONE=RHECA46 /FEA=EST /CNT=3 /TID=Rn.22395.1 /TIER=ConsEnd /STK=0 /UG=Rn.22395 /UG_TITLE=ESTs, Highly similar to SES1_MOUSE Sestrin 1 (p53-regulated protein PA26) (M.musculus) AI104331 sestrin 1 Sesn1 294518 NM_001106396 0007050 // cell cycle arrest // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 1395810_at BM383094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383094 /DB_XREF=gi:18183147 /DB_XREF=UI-R-DS0-cje-l-13-0-UI.s1 /CLONE=UI-R-DS0-cje-l-13-0-UI /FEA=EST /CNT=3 /TID=Rn.35380.1 /TIER=ConsEnd /STK=0 /UG=Rn.35380 /UG_TITLE=ESTs BM383094 1395811_at BI395611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI395611 /DB_XREF=gi:15091001 /DB_XREF=EST531482 /CLONE=RGIBT24 /FEA=EST /CNT=3 /TID=Rn.28171.1 /TIER=ConsEnd /STK=0 /UG=Rn.28171 /UG_TITLE=ESTs BI395611 1395812_at BF389501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389501 /DB_XREF=gi:11374336 /DB_XREF=UI-R-CJ0-bfc-e-03-0-UI.s1 /CLONE=UI-R-CJ0-bfc-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.51050.1 /TIER=ConsEnd /STK=0 /UG=Rn.51050 /UG_TITLE=ESTs BF389501 1395813_at AW144176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144176 /DB_XREF=gi:6164075 /DB_XREF=EST294472 /CLONE=RGICK42 /FEA=EST /CNT=3 /TID=Rn.73167.1 /TIER=ConsEnd /STK=0 /UG=Rn.73167 /UG_TITLE=ESTs AW144176 lysine-rich coiled-coil 1 Krcc1 312437 NM_001009413 1395814_at AW529817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529817 /DB_XREF=gi:7172231 /DB_XREF=UI-R-BU0-amt-f-07-0-UI.s1 /CLONE=UI-R-BU0-amt-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.47307.1 /TIER=ConsEnd /STK=0 /UG=Rn.47307 /UG_TITLE=ESTs AW529817 1395815_at BF291198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291198 /DB_XREF=gi:11222268 /DB_XREF=EST455789 /CLONE=RGIIK04 /FEA=EST /CNT=3 /TID=Rn.56054.1 /TIER=ConsEnd /STK=0 /UG=Rn.56054 /UG_TITLE=ESTs BF291198 1395816_at BF393889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393889 /DB_XREF=gi:11378752 /DB_XREF=UI-R-CA0-bgw-c-02-0-UI.s1 /CLONE=UI-R-CA0-bgw-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.60465.1 /TIER=ConsEnd /STK=0 /UG=Rn.60465 /UG_TITLE=ESTs BF393889 family with sequence similarity 13, member C1 Fam13c1 294565 XM_001080212 /// XM_002728943 /// XM_228362 1395817_at BI290516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290516 /DB_XREF=gi:14949156 /DB_XREF=UI-R-DK0-cgd-b-10-0-UI.s1 /CLONE=UI-R-DK0-cgd-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.79158.1 /TIER=ConsEnd /STK=0 /UG=Rn.79158 /UG_TITLE=ESTs BI290516 1395818_at BF542853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542853 /DB_XREF=gi:11633960 /DB_XREF=UI-R-C3-tl-h-04-0-UI.r1 /CLONE=UI-R-C3-tl-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.41793.1 /TIER=ConsEnd /STK=0 /UG=Rn.41793 /UG_TITLE=ESTs, Weakly similar to TC17 RAT TRANSCRIPTION FACTOR 17 (R.norvegicus) BF542853 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation 1395819_at AW526127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526127 /DB_XREF=gi:7168512 /DB_XREF=UI-R-BO1-aiz-e-05-0-UI.s1 /CLONE=UI-R-BO1-aiz-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.46093.1 /TIER=ConsEnd /STK=0 /UG=Rn.46093 /UG_TITLE=ESTs AW526127 1395820_at BF388337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388337 /DB_XREF=gi:11373166 /DB_XREF=UI-R-CA1-bcz-c-05-0-UI.s1 /CLONE=UI-R-CA1-bcz-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.43593.1 /TIER=ConsEnd /STK=0 /UG=Rn.43593 /UG_TITLE=ESTs BF388337 Ring finger protein 150 Rnf150 364983 NM_001191093 /// XM_001067775 /// XM_001073394 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395821_at BF524120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF524120 /DB_XREF=gi:11632087 /DB_XREF=UI-R-C0-hu-c-02-0-UI.r1 /CLONE=UI-R-C0-hu-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.82160.1 /TIER=ConsEnd /STK=0 /UG=Rn.82160 /UG_TITLE=ESTs BF524120 core-binding factor, beta subunit Cbfb 361391 NM_001013191 0001503 // ossification // not recorded /// 0001503 // ossification // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0030098 // lymphocyte differentiation // inferred from electronic annotation /// 0030098 // lymphocyte differentiation // not recorded /// 0030099 // myeloid cell differentiation // inferred from electronic annotation /// 0030099 // myeloid cell differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded /// 0060216 // definitive hemopoiesis // inferred from electronic annotation /// 0060216 // definitive hemopoiesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395822_at BE098563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098563 /DB_XREF=gi:8490427 /DB_XREF=UI-R-BJ1-asx-d-02-0-UI.s1 /CLONE=UI-R-BJ1-asx-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.49293.1 /TIER=ConsEnd /STK=0 /UG=Rn.49293 /UG_TITLE=ESTs BE098563 1395823_at BF284646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284646 /DB_XREF=gi:11215716 /DB_XREF=EST449237 /CLONE=RGIEU41 /FEA=EST /CNT=3 /TID=Rn.56087.1 /TIER=ConsEnd /STK=0 /UG=Rn.56087 /UG_TITLE=ESTs BF284646 Hypothetical protein LOC691653 LOC691653 691653 XM_001079159 1395824_at BF403931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403931 /DB_XREF=gi:11391906 /DB_XREF=UI-R-CA1-bjd-j-05-0-UI.s1 /CLONE=UI-R-CA1-bjd-j-05-0-UI /FEA=EST /CNT=3 /TID=Rn.60866.1 /TIER=ConsEnd /STK=0 /UG=Rn.60866 /UG_TITLE=ESTs, Weakly similar to CGB1 RAT G2MITOTIC-SPECIFIC CYCLIN B1 (R.norvegicus) BF403931 cyclin O Ccno 499528 NM_001109175 0006284 // base-excision repair // not recorded /// 0009790 // embryo development // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0045008 // depyrimidination // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0004844 // uracil DNA N-glycosylase activity // not recorded 1395825_at BF284859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284859 /DB_XREF=gi:11215929 /DB_XREF=EST449450 /CLONE=RGIEX21 /FEA=EST /CNT=3 /TID=Rn.65537.1 /TIER=ConsEnd /STK=0 /UG=Rn.65537 /UG_TITLE=ESTs, Weakly similar to NUCL RAT NUCLEOLIN (R.norvegicus) BF284859 Craniofacial development protein 1 Cfdp1 292027 NM_199378 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded 1395826_at BG664036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664036 /DB_XREF=gi:13885958 /DB_XREF=DRAACB08 /CLONE=DRAACB08 /FEA=EST /CNT=3 /TID=Rn.69138.1 /TIER=ConsEnd /STK=0 /UG=Rn.69138 /UG_TITLE=ESTs, Highly similar to 2A5E MOUSE SERINETHREONINE PROTEIN PHOSPHATASE 2A, 56 KDA REGULATORY SUBUNIT, EPSILON ISOFORM (M.musculus) BG664036 protein phosphatase 2, regulatory subunit B', epsilon isoform Ppp2r5e 299147 NM_001106740 0007165 // signal transduction // inferred from electronic annotation 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008601 // protein phosphatase type 2A regulator activity // inferred from electronic annotation 1395827_at BF411608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411608 /DB_XREF=gi:11399597 /DB_XREF=UI-R-BT1-bmp-d-01-0-UI.s1 /CLONE=UI-R-BT1-bmp-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.44118.1 /TIER=ConsEnd /STK=0 /UG=Rn.44118 /UG_TITLE=ESTs BF411608 1395828_at BF407793 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407793 /DB_XREF=gi:11395768 /DB_XREF=UI-R-BJ2-brd-f-03-0-UI.s1 /CLONE=UI-R-BJ2-brd-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.63734.1 /TIER=ConsEnd /STK=0 /UG=Rn.63734 /UG_TITLE=ESTs, Weakly similar to kinesin family member 3C (Rattus norvegicus) (R.norvegicus) BF407793 kinesin family member 23 Kif23 315740 NM_001108155 0007018 // microtubule-based movement // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005819 // spindle // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0030496 // midbody // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1395829_at AI501441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501441 /DB_XREF=gi:4399292 /DB_XREF=UI-R-C2p-sb-b-08-0-UI.s1 /CLONE=UI-R-C2p-sb-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.36127.1 /TIER=ConsEnd /STK=0 /UG=Rn.36127 /UG_TITLE=ESTs AI501441 1395830_at AT003256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AT003256 /DB_XREF=gi:10277887 /DB_XREF=AT003256 /CLONE=151-E12-2-3 /FEA=EST /CNT=3 /TID=Rn.54248.1 /TIER=ConsEnd /STK=0 /UG=Rn.54248 /UG_TITLE=ESTs AT003256 1395831_at BF288661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288661 /DB_XREF=gi:11219835 /DB_XREF=EST453356 /CLONE=RGIGX28 /FEA=EST /CNT=3 /TID=Rn.55646.1 /TIER=ConsEnd /STK=0 /UG=Rn.55646 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) BF288661 1395832_at AW529599 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529599 /DB_XREF=gi:7172013 /DB_XREF=UI-R-BT1-akn-b-05-0-UI.s1 /CLONE=UI-R-BT1-akn-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.47253.1 /TIER=ConsEnd /STK=0 /UG=Rn.47253 /UG_TITLE=ESTs AW529599 1395833_at BF563535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563535 /DB_XREF=gi:11673265 /DB_XREF=UI-R-C4-alg-c-06-0-UI.r1 /CLONE=UI-R-C4-alg-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.49227.1 /TIER=ConsEnd /STK=0 /UG=Rn.49227 /UG_TITLE=ESTs BF563535 zinc finger protein 259 Zfp259 500989 NM_001137646 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded 1395834_at H34267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H34267 /DB_XREF=gi:979684 /DB_XREF=EST111023 /CLONE=RPNBQ05 /FEA=EST /CNT=3 /TID=Rn.77618.1 /TIER=ConsEnd /STK=0 /UG=Rn.77618 /UG_TITLE=ESTs H34267 1395835_at BE113328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113328 /DB_XREF=gi:8505398 /DB_XREF=UI-R-BJ1-awd-g-03-0-UI.s1 /CLONE=UI-R-BJ1-awd-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.44771.1 /TIER=ConsEnd /STK=0 /UG=Rn.44771 /UG_TITLE=ESTs BE113328 HD domain containing 2 Hddc2 361462 NM_001108460 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation 1395836_at BF400594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400594 /DB_XREF=gi:11388569 /DB_XREF=UI-R-CA0-bhd-c-02-0-UI.s1 /CLONE=UI-R-CA0-bhd-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.46720.1 /TIER=ConsEnd /STK=0 /UG=Rn.46720 /UG_TITLE=ESTs BF400594 Odz, odd Oz/ten-m homolog 2 (Drosophila) Odz2 117242 NM_020088 0007165 // signal transduction // inferred from electronic annotation /// 0007417 // central nervous system development // traceable author statement 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004180 // carboxypeptidase activity // inferred from electronic annotation 1395837_at BE119517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119517 /DB_XREF=gi:8511586 /DB_XREF=UI-R-CA0-bae-c-05-0-UI.s1 /CLONE=UI-R-CA0-bae-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.53256.1 /TIER=ConsEnd /STK=0 /UG=Rn.53256 /UG_TITLE=ESTs BE119517 1395838_at BF394890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394890 /DB_XREF=gi:11379848 /DB_XREF=UI-R-CA0-bgf-b-01-0-UI.s1 /CLONE=UI-R-CA0-bgf-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.58344.1 /TIER=ConsEnd /STK=0 /UG=Rn.58344 /UG_TITLE=ESTs BF394890 1395839_at BF561078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561078 /DB_XREF=gi:11670808 /DB_XREF=UI-R-E1-fd-h-07-0-UI.r1 /CLONE=UI-R-E1-fd-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.55068.1 /TIER=ConsEnd /STK=0 /UG=Rn.55068 /UG_TITLE=ESTs, Highly similar to Z142_HUMAN ZINC FINGER PROTEIN 142 (H.sapiens) BF561078 zinc finger protein 142 Znf142 316524 NM_001108225 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1395840_at AW520679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520679 /DB_XREF=gi:7163057 /DB_XREF=UI-R-BJ0p-agd-c-07-0-UI.s1 /CLONE=UI-R-BJ0p-agd-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.44976.1 /TIER=ConsEnd /STK=0 /UG=Rn.44976 /UG_TITLE=ESTs, Highly similar to IF1A MOUSE EUKARYOTIC TRANSLATION INITIATION FACTOR 1A (M.musculus) AW520679 eukaryotic translation initiation factor 1A Eif1a 317163 NM_001008773 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation 1395841_at AW919867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919867 /DB_XREF=gi:8085671 /DB_XREF=EST351171 /CLONE=RGIGN75 /FEA=EST /CNT=3 /TID=Rn.55480.1 /TIER=ConsEnd /STK=0 /UG=Rn.55480 /UG_TITLE=ESTs AW919867 1395842_at AI136504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136504 /DB_XREF=gi:3637281 /DB_XREF=UI-R-C2p-nv-g-12-0-UI.s1 /CLONE=UI-R-C2p-nv-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.27151.1 /TIER=ConsEnd /STK=0 /UG=Rn.27151 /UG_TITLE=ESTs AI136504 1395843_at AW143625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143625 /DB_XREF=gi:6163524 /DB_XREF=EST293921 /CLONE=RGIBW75 /FEA=EST /CNT=3 /TID=Rn.51459.1 /TIER=ConsEnd /STK=0 /UG=Rn.51459 /UG_TITLE=ESTs, Weakly similar to A44492 probable DNARNA-binding protein - rat (R.norvegicus) AW143625 1395844_at BF284064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284064 /DB_XREF=gi:11215134 /DB_XREF=EST448655 /CLONE=RGIEK51 /FEA=EST /CNT=3 /TID=Rn.55256.1 /TIER=ConsEnd /STK=0 /UG=Rn.55256 /UG_TITLE=ESTs BF284064 1395845_at AW534087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534087 /DB_XREF=gi:7176501 /DB_XREF=UI-R-C4-alp-a-05-0-UI.s1 /CLONE=UI-R-C4-alp-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.44968.1 /TIER=ConsEnd /STK=0 /UG=Rn.44968 /UG_TITLE=ESTs AW534087 1395846_at BF567901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567901 /DB_XREF=gi:11677631 /DB_XREF=UI-R-BO0-aho-g-10-0-UI.r1 /CLONE=UI-R-BO0-aho-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.64242.1 /TIER=ConsEnd /STK=0 /UG=Rn.64242 /UG_TITLE=ESTs BF567901 1395847_at BF417335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417335 /DB_XREF=gi:11405324 /DB_XREF=UI-R-CN0-bld-a-03-0-UI.s1 /CLONE=UI-R-CN0-bld-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.47244.1 /TIER=ConsEnd /STK=0 /UG=Rn.47244 /UG_TITLE=ESTs BF417335 hypothetical protein LOC100188933 LOC100188933 100188933 NM_001134695 1395848_at AA998703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998703 /DB_XREF=gi:4291693 /DB_XREF=UI-R-C0-ih-e-01-0-UI.s1 /CLONE=UI-R-C0-ih-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.34778.1 /TIER=ConsEnd /STK=0 /UG=Rn.34778 /UG_TITLE=ESTs AA998703 similar to NIPA-like domain containing 3 LOC683962 683962 XM_001068233 1395849_at BF401574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401574 /DB_XREF=gi:11389549 /DB_XREF=UI-R-CA0-bgm-c-03-0-UI.s1 /CLONE=UI-R-CA0-bgm-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.58312.1 /TIER=ConsEnd /STK=0 /UG=Rn.58312 /UG_TITLE=ESTs BF401574 1395850_at AA894165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894165 /DB_XREF=gi:4132363 /DB_XREF=EST197968 /CLONE=RSPAR81 /FEA=EST /CNT=3 /TID=Rn.22763.1 /TIER=ConsEnd /STK=0 /UG=Rn.22763 /UG_TITLE=ESTs, Weakly similar to TRUA MOUSE TRNA PSEUDOURIDINE SYNTHASE A (M.musculus) AA894165 pseudouridylate synthase 3 Pus3 315554 NM_001108134 0001522 // pseudouridine synthesis // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0009451 // RNA modification // inferred from electronic annotation /// 0031119 // tRNA pseudouridine synthesis // inferred from electronic annotation /// 0031119 // tRNA pseudouridine synthesis // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0009982 // pseudouridine synthase activity // inferred from electronic annotation /// 0009982 // pseudouridine synthase activity // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation 1395851_at BG371944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371944 /DB_XREF=gi:13268481 /DB_XREF=UI-R-CV0-brk-c-07-0-UI.s1 /CLONE=UI-R-CV0-brk-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.48046.1 /TIER=ConsEnd /STK=0 /UG=Rn.48046 /UG_TITLE=ESTs BG371944 kelch repeat and BTB (POZ) domain containing 5 Kbtbd5 316088 NM_001108195 1395852_at BF546340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546340 /DB_XREF=gi:11637441 /DB_XREF=UI-R-C2p-rk-b-06-0-UI.r1 /CLONE=UI-R-C2p-rk-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.76197.1 /TIER=ConsEnd /STK=0 /UG=Rn.76197 /UG_TITLE=ESTs, Weakly similar to A54774 ATP binding cassette transporter ABC1 - human (M.musculus) BF546340 ATP-binding cassette, sub-family A (ABC1), member 3 Abca3 302973 XM_001054650 /// XM_002724654 /// XM_220219 0006810 // transport // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from direct assay /// 0042599 // lamellar body // inferred from direct assay /// 0042599 // lamellar body // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation 1395853_at BI292244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292244 /DB_XREF=gi:14952550 /DB_XREF=UI-R-DN0-civ-c-16-0-UI.s1 /CLONE=UI-R-DN0-civ-c-16-0-UI /FEA=EST /CNT=3 /TID=Rn.41168.1 /TIER=ConsEnd /STK=0 /UG=Rn.41168 /UG_TITLE=ESTs BI292244 chloride channel calcium activated 3 Clca3 308015 NM_001107449 0016021 // integral to membrane // not recorded /// 0030141 // stored secretory granule // not recorded 1395854_at AW527196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527196 /DB_XREF=gi:7169610 /DB_XREF=UI-R-BO1-ajm-f-02-0-UI.s1 /CLONE=UI-R-BO1-ajm-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.46450.1 /TIER=ConsEnd /STK=0 /UG=Rn.46450 /UG_TITLE=ESTs AW527196 1395855_at AW918630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918630 /DB_XREF=gi:8084411 /DB_XREF=EST349934 /CLONE=RGIEV62 /FEA=EST /CNT=3 /TID=Rn.22777.2 /TIER=ConsEnd /STK=0 /UG=Rn.22777 /UG_TITLE=ESTs, Weakly similar to RNFJ_MOUSE RING FINGER PROTEIN 19 (XY BODY PROTEIN) (XYBP) (GAMETOGENESIS EXPRESSED PROTEIN GEG-154) (UBCM4-INTERACTING PROTEIN 117) (UIP117) (M.musculus) AW918630 ariadne homolog 2 (Drosophila) Arih2 316005 NM_001012275 0000209 // protein polyubiquitination // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0048588 // developmental cell growth // not recorded /// 0070534 // protein K63-linked ubiquitination // not recorded /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0071425 // hemopoietic stem cell proliferation // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395856_at BF289112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289112 /DB_XREF=gi:11220182 /DB_XREF=EST453703 /CLONE=RGIHB24 /FEA=EST /CNT=3 /TID=Rn.55711.1 /TIER=ConsEnd /STK=0 /UG=Rn.55711 /UG_TITLE=ESTs BF289112 1395857_at AI717309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717309 /DB_XREF=gi:5034565 /DB_XREF=UI-R-Y0-aca-e-12-0-UI.s1 /CLONE=UI-R-Y0-aca-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.28390.1 /TIER=ConsEnd /STK=0 /UG=Rn.28390 /UG_TITLE=ESTs AI717309 Family with sequence similarity 35, member A Fam35a 364514 NM_001025028 1395858_at AI548127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548127 /DB_XREF=gi:4465615 /DB_XREF=UI-R-C3-sm-f-06-0-UI.s1 /CLONE=UI-R-C3-sm-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.37917.1 /TIER=ConsEnd /STK=0 /UG=Rn.37917 /UG_TITLE=ESTs AI548127 1395859_at BI293415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293415 /DB_XREF=gi:14954886 /DB_XREF=UI-R-DK0-cdq-b-09-0-UI.s1 /CLONE=UI-R-DK0-cdq-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.32681.1 /TIER=ConsEnd /STK=0 /UG=Rn.32681 /UG_TITLE=ESTs BI293415 1395860_at BF403320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403320 /DB_XREF=gi:11391295 /DB_XREF=UI-R-CA1-biy-e-04-0-UI.s1 /CLONE=UI-R-CA1-biy-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.60250.1 /TIER=ConsEnd /STK=0 /UG=Rn.60250 /UG_TITLE=ESTs BF403320 1395861_at BG379884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379884 /DB_XREF=gi:13304356 /DB_XREF=UI-R-CS0-btk-d-02-0-UI.s1 /CLONE=UI-R-CS0-btk-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.63823.1 /TIER=ConsEnd /STK=0 /UG=Rn.63823 /UG_TITLE=ESTs BG379884 Hypothetical protein LOC688535 LOC688535 688535 XM_001067323 1395862_at BF397879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397879 /DB_XREF=gi:11382863 /DB_XREF=UI-R-BS2-bec-f-12-0-UI.s1 /CLONE=UI-R-BS2-bec-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.64046.1 /TIER=ConsEnd /STK=0 /UG=Rn.64046 /UG_TITLE=ESTs BF397879 1395863_at BF543458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543458 /DB_XREF=gi:11634571 /DB_XREF=UI-R-C3-sy-h-03-0-UI.r1 /CLONE=UI-R-C3-sy-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.34840.1 /TIER=ConsEnd /STK=0 /UG=Rn.34840 /UG_TITLE=ESTs, Highly similar to COT2 RAT COUP TRANSCRIPTION FACTOR 2 (R.norvegicus) BF543458 Nuclear receptor subfamily 2, group F, member 2 Nr2f2 113984 NM_080778 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0001937 // negative regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001937 // negative regulation of endothelial cell proliferation // not recorded /// 0001945 // lymph vessel development // inferred from electronic annotation /// 0001945 // lymph vessel development // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from mutant phenotype /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009956 // radial pattern formation // inferred from electronic annotation /// 0009956 // radial pattern formation // not recorded /// 0010596 // negative regulation of endothelial cell migration // inferred from electronic annotation /// 0010596 // negative regulation of endothelial cell migration // not recorded /// 0030900 // forebrain development // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032582 // negative regulation of gene-specific transcription // inferred from electronic annotation /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // inferred from electronic annotation /// 0048514 // blood vessel morphogenesis // not recorded /// 0060173 // limb development // inferred from electronic annotation /// 0060173 // limb development // not recorded /// 0060849 // regulation of transcription involved in lymphatic endothelial cell fate commitment // inferred from electronic annotation /// 0060849 // regulation of transcription involved in lymphatic endothelial cell fate commitment // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0001972 // retinoic acid binding // not recorded /// 0001972 // retinoic acid binding // inferred from sequence or structural similarity /// 0001972 // retinoic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003706 // ligand-regulated transcription factor activity // not recorded /// 0003706 // ligand-regulated transcription factor activity // inferred from sequence or structural similarity /// 0003706 // ligand-regulated transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395864_at AA945715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945715 /DB_XREF=gi:3105631 /DB_XREF=EST201214 /CLONE=RLUAS29 /FEA=EST /CNT=3 /TID=Rn.46674.1 /TIER=ConsEnd /STK=0 /UG=Rn.46674 /UG_TITLE=ESTs AA945715 1395865_at BF290682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290682 /DB_XREF=gi:11221752 /DB_XREF=EST455273 /CLONE=RGIHX85 /FEA=EST /CNT=3 /TID=Rn.56084.1 /TIER=ConsEnd /STK=0 /UG=Rn.56084 /UG_TITLE=ESTs BF290682 1395866_at BF543899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543899 /DB_XREF=gi:11635006 /DB_XREF=UI-R-Y0-abx-e-05-0-UI.r1 /CLONE=UI-R-Y0-abx-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.63828.1 /TIER=ConsEnd /STK=0 /UG=Rn.63828 /UG_TITLE=ESTs BF543899 zinc finger protein ZFP LOC503192 503192 XM_001077756 /// XM_578715 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1395867_at BI296703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296703 /DB_XREF=gi:14961395 /DB_XREF=UI-R-CV2-cgv-c-12-0-UI.s1 /CLONE=UI-R-CV2-cgv-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.66221.1 /TIER=ConsEnd /STK=0 /UG=Rn.66221 /UG_TITLE=ESTs BI296703 1395868_at BF287970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287970 /DB_XREF=gi:11219040 /DB_XREF=EST452561 /CLONE=RGIGN22 /FEA=EST /CNT=3 /TID=Rn.55476.1 /TIER=ConsEnd /STK=0 /UG=Rn.55476 /UG_TITLE=ESTs BF287970 1395869_at BI296231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296231 /DB_XREF=gi:14960466 /DB_XREF=UI-R-DK0-cex-h-07-0-UI.s1 /CLONE=UI-R-DK0-cex-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.40830.1 /TIER=ConsEnd /STK=0 /UG=Rn.40830 /UG_TITLE=ESTs BI296231 1395870_at BF403357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403357 /DB_XREF=gi:11391332 /DB_XREF=UI-R-CA1-biy-k-14-0-UI.s1 /CLONE=UI-R-CA1-biy-k-14-0-UI /FEA=EST /CNT=3 /TID=Rn.60258.1 /TIER=ConsEnd /STK=0 /UG=Rn.60258 /UG_TITLE=ESTs, Weakly similar to JQ1974 HTF9-C protein - mouse (M.musculus) BF403357 TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) Trmt2a 287953 NM_001011895 0006396 // RNA processing // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008173 // RNA methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1395871_at H31553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31553 /DB_XREF=gi:976970 /DB_XREF=EST105686 /CLONE=RPCAP90 /FEA=EST /CNT=3 /TID=Rn.82282.1 /TIER=ConsEnd /STK=0 /UG=Rn.82282 /UG_TITLE=ESTs, Highly similar to TP2B MOUSE DNA TOPOISOMERASE II, BETA ISOZYME (M.musculus) H31553 similar to topoisomerase (DNA) II beta LOC361100 361100 NM_001100858 /// XM_001067768 /// XM_341386 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006265 // DNA topological change // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003916 // DNA topoisomerase activity // inferred from electronic annotation /// 0003918 // DNA topoisomerase (ATP-hydrolyzing) activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1395872_at BF395768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395768 /DB_XREF=gi:11380739 /DB_XREF=UI-R-BT1-bkc-a-11-0-UI.s1 /CLONE=UI-R-BT1-bkc-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.53430.1 /TIER=ConsEnd /STK=0 /UG=Rn.53430 /UG_TITLE=ESTs BF395768 1395873_at BF410050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410050 /DB_XREF=gi:11398025 /DB_XREF=UI-R-CA0-bjs-h-11-0-UI.s1 /CLONE=UI-R-CA0-bjs-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.61562.1 /TIER=ConsEnd /STK=0 /UG=Rn.61562 /UG_TITLE=ESTs BF410050 1395874_at AW921461 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921461 /DB_XREF=gi:8087285 /DB_XREF=EST352765 /CLONE=RGIHX27 /FEA=EST /CNT=3 /TID=Rn.72843.1 /TIER=ConsEnd /STK=0 /UG=Rn.72843 /UG_TITLE=ESTs AW921461 1395875_at BG379050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379050 /DB_XREF=gi:13303522 /DB_XREF=UI-R-BT1-bnh-a-12-0-UI.s1 /CLONE=UI-R-BT1-bnh-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.49948.1 /TIER=ConsEnd /STK=0 /UG=Rn.49948 /UG_TITLE=ESTs BG379050 tetratricopeptide repeat domain 37 Ttc37 294595 XM_001059136 /// XM_226606 0005488 // binding // inferred from electronic annotation 1395876_at AW920646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920646 /DB_XREF=gi:8086459 /DB_XREF=EST351950 /CLONE=RGIHA35 /FEA=EST /CNT=3 /TID=Rn.55690.1 /TIER=ConsEnd /STK=0 /UG=Rn.55690 /UG_TITLE=ESTs AW920646 1395877_at AW919687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919687 /DB_XREF=gi:8085486 /DB_XREF=EST350991 /CLONE=RGIGF64 /FEA=EST /CNT=3 /TID=Rn.61341.1 /TIER=ConsEnd /STK=0 /UG=Rn.61341 /UG_TITLE=ESTs AW919687 1395878_at AI706645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI706645 /DB_XREF=gi:4994545 /DB_XREF=UI-R-AD1-zl-a-03-0-UI.s1 /CLONE=UI-R-AD1-zl-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.44759.1 /TIER=ConsEnd /STK=0 /UG=Rn.44759 /UG_TITLE=ESTs AI706645 1395879_at BF412784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412784 /DB_XREF=gi:11400773 /DB_XREF=UI-R-BT1-bnz-d-02-0-UI.s1 /CLONE=UI-R-BT1-bnz-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.62163.1 /TIER=ConsEnd /STK=0 /UG=Rn.62163 /UG_TITLE=ESTs, Weakly similar to C32D5.6.p (Caenorhabditis elegans) (C.elegans) BF412784 tetratricopeptide repeat domain 39B Ttc39b 298186 NM_001106665 0005488 // binding // inferred from electronic annotation 1395880_at BE110888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110888 /DB_XREF=gi:8502993 /DB_XREF=UI-R-BJ1-aux-b-06-0-UI.s1 /CLONE=UI-R-BJ1-aux-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.51939.1 /TIER=ConsEnd /STK=0 /UG=Rn.51939 /UG_TITLE=ESTs BE110888 1395881_at BE110708 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110708 /DB_XREF=gi:8502813 /DB_XREF=UI-R-BJ1-avd-b-03-0-UI.s1 /CLONE=UI-R-BJ1-avd-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.51921.1 /TIER=ConsEnd /STK=0 /UG=Rn.51921 /UG_TITLE=ESTs BE110708 Death-associated protein Dap 64322 NM_022526 0006915 // apoptosis // inferred from electronic annotation /// 0006919 // activation of caspase activity // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0010507 // negative regulation of autophagy // not recorded /// 0032088 // negative regulation of NF-kappaB transcription factor activity // not recorded /// 0034198 // cellular response to amino acid starvation // not recorded 0016564 // transcription repressor activity // not recorded /// 0070513 // death domain binding // not recorded 1395882_at AW527138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527138 /DB_XREF=gi:7169552 /DB_XREF=UI-R-BO1-ajm-a-02-0-UI.s1 /CLONE=UI-R-BO1-ajm-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.46432.1 /TIER=ConsEnd /STK=0 /UG=Rn.46432 /UG_TITLE=ESTs AW527138 1395883_at BF550469 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550469 /DB_XREF=gi:11660199 /DB_XREF=UI-R-E0-bq-a-04-0-UI.r1 /CLONE=UI-R-E0-bq-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.47747.1 /TIER=ConsEnd /STK=0 /UG=Rn.47747 /UG_TITLE=ESTs BF550469 1395884_at BF414572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414572 /DB_XREF=gi:11402561 /DB_XREF=UI-R-CA0-bpb-c-04-0-UI.s1 /CLONE=UI-R-CA0-bpb-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.63492.1 /TIER=ConsEnd /STK=0 /UG=Rn.63492 /UG_TITLE=ESTs, Weakly similar to T46340 hypothetical protein DKFZp434B0814.1 (H.sapiens) BF414572 angel homolog 2 (Drosophila) Angel2 305035 NM_001135119 1395885_at AA957955 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957955 /DB_XREF=gi:4277845 /DB_XREF=UI-R-E1-fz-g-01-0-UI.s1 /CLONE=UI-R-E1-fz-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.65838.1 /TIER=ConsEnd /STK=0 /UG=Rn.65838 /UG_TITLE=ESTs AA957955 1395886_at H31273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31273 /DB_XREF=gi:976690 /DB_XREF=EST105161 /CLONE=RPCAG42 /FEA=EST /CNT=3 /TID=Rn.69784.1 /TIER=ConsEnd /STK=0 /UG=Rn.69784 /UG_TITLE=ESTs, Weakly similar to ACTG_HUMAN ACTIN, CYTOPLASMIC 2 (R.norvegicus) H31273 ARP3 actin-related protein 3 homolog (yeast) Actr3 81732 NM_031068 0009743 // response to carbohydrate stimulus // inferred from expression pattern /// 0010592 // positive regulation of lamellipodium assembly // inferred from mutant phenotype /// 0030833 // regulation of actin filament polymerization // inferred from electronic annotation /// 0030838 // positive regulation of actin filament polymerization // inferred from mutant phenotype /// 0043519 // regulation of myosin II filament assembly or disassembly // inferred from mutant phenotype /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0046677 // response to antibiotic // inferred from expression pattern /// 0050775 // positive regulation of dendrite morphogenesis // inferred from mutant phenotype /// 0051491 // positive regulation of filopodium assembly // inferred from mutant phenotype /// 0051789 // response to protein stimulus // inferred from expression pattern 0000139 // Golgi membrane // inferred from direct assay /// 0002102 // podosome // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // inferred from direct assay /// 0030027 // lamellipodium // inferred from direct assay /// 0030027 // lamellipodium // not recorded /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030056 // hemidesmosome // inferred from direct assay /// 0031252 // cell leading edge // inferred from direct assay /// 0042995 // cell projection // inferred from electronic annotation /// 0060076 // excitatory synapse // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1395887_at BF283642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283642 /DB_XREF=gi:11214712 /DB_XREF=EST448233 /CLONE=RGIEE94 /FEA=EST /CNT=3 /TID=Rn.39346.1 /TIER=ConsEnd /STK=0 /UG=Rn.39346 /UG_TITLE=ESTs BF283642 similar to RIKEN cDNA 1600029D21 LOC363060 363060 NM_001014209 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1395888_at BF559498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559498 /DB_XREF=gi:11669228 /DB_XREF=UI-R-E0-cm-b-12-0-UI.r1 /CLONE=UI-R-E0-cm-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.48824.1 /TIER=ConsEnd /STK=0 /UG=Rn.48824 /UG_TITLE=ESTs BF559498 1395889_at AA956651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956651 /DB_XREF=gi:4239125 /DB_XREF=UI-R-E1-fl-b-05-0-UI.s1 /CLONE=UI-R-E1-fl-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.53918.1 /TIER=ConsEnd /STK=0 /UG=Rn.53918 /UG_TITLE=ESTs AA956651 1395890_at BE110613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110613 /DB_XREF=gi:8502718 /DB_XREF=UI-R-BJ1-avu-a-06-0-UI.s1 /CLONE=UI-R-BJ1-avu-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.53547.1 /TIER=ConsEnd /STK=0 /UG=Rn.53547 /UG_TITLE=ESTs, Weakly similar to T32814 hypothetical protein H17B01.4 - Caenorhabditis elegans (C.elegans) BE110613 similar to KIAA0090 protein RGD1310427 362643 NM_001108690 0005515 // protein binding // not recorded 1395891_at AI535546 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535546 /DB_XREF=gi:4449681 /DB_XREF=UI-R-C3-ta-d-09-0-UI.s1 /CLONE=UI-R-C3-ta-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.34008.1 /TIER=ConsEnd /STK=0 /UG=Rn.34008 /UG_TITLE=ESTs AI535546 1395892_at AW920797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920797 /DB_XREF=gi:8086612 /DB_XREF=EST352101 /CLONE=RGIHC61 /FEA=EST /CNT=3 /TID=Rn.55741.1 /TIER=ConsEnd /STK=0 /UG=Rn.55741 /UG_TITLE=ESTs AW920797 1395893_at AW921408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921408 /DB_XREF=gi:8087232 /DB_XREF=EST352712 /CLONE=RGIHT53 /FEA=EST /CNT=3 /TID=Rn.56144.1 /TIER=ConsEnd /STK=0 /UG=Rn.56144 /UG_TITLE=ESTs AW921408 1395894_at H34636 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H34636 /DB_XREF=gi:980053 /DB_XREF=EST111724 /CLONE=RPNCK57 /FEA=EST /CNT=3 /TID=Rn.81582.1 /TIER=ConsEnd /STK=0 /UG=Rn.81582 /UG_TITLE=ESTs H34636 apoptosis inhibitor 5 Api5 362170 NM_001127379 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded 0005488 // binding // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // not recorded 1395895_at AI501207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501207 /DB_XREF=gi:4399058 /DB_XREF=UI-R-C2p-ry-a-05-0-UI.s1 /CLONE=UI-R-C2p-ry-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.37818.1 /TIER=ConsEnd /STK=0 /UG=Rn.37818 /UG_TITLE=ESTs AI501207 1395896_at AI233009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233009 /DB_XREF=gi:3816889 /DB_XREF=EST229697 /CLONE=RKICJ75 /FEA=EST /CNT=3 /TID=Rn.37245.1 /TIER=ConsEnd /STK=0 /UG=Rn.37245 /UG_TITLE=ESTs AI233009 1395897_at AI044421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044421 /DB_XREF=gi:3291324 /DB_XREF=UI-R-C1-jw-a-09-0-UI.s1 /CLONE=UI-R-C1-jw-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.34381.1 /TIER=ConsEnd /STK=0 /UG=Rn.34381 /UG_TITLE=ESTs AI044421 1395898_at BF396228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396228 /DB_XREF=gi:11381165 /DB_XREF=UI-R-BS2-bdv-d-04-0-UI.s1 /CLONE=UI-R-BS2-bdv-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.50543.1 /TIER=ConsEnd /STK=0 /UG=Rn.50543 /UG_TITLE=ESTs BF396228 1395899_at AW921250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921250 /DB_XREF=gi:8087073 /DB_XREF=EST352554 /CLONE=RGIHQ14 /FEA=EST /CNT=3 /TID=Rn.65904.1 /TIER=ConsEnd /STK=0 /UG=Rn.65904 /UG_TITLE=ESTs AW921250 1395900_at AW525815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525815 /DB_XREF=gi:7168200 /DB_XREF=UI-R-BJ0p-ais-b-06-0-UI.s1 /CLONE=UI-R-BJ0p-ais-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.46013.1 /TIER=ConsEnd /STK=0 /UG=Rn.46013 /UG_TITLE=ESTs AW525815 CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae) Chtf8 364996 NM_001126495 /// NM_001194951 0006260 // DNA replication // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1395901_at AW532049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532049 /DB_XREF=gi:7174463 /DB_XREF=UI-R-BS0-amn-e-08-0-UI.s1 /CLONE=UI-R-BS0-amn-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.48266.1 /TIER=ConsEnd /STK=0 /UG=Rn.48266 /UG_TITLE=ESTs AW532049 1395902_at AW521205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521205 /DB_XREF=gi:7163583 /DB_XREF=UI-R-BO0-agk-e-03-0-UI.s1 /CLONE=UI-R-BO0-agk-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.45132.1 /TIER=ConsEnd /STK=0 /UG=Rn.45132 /UG_TITLE=ESTs AW521205 1395903_at BF565954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565954 /DB_XREF=gi:11675684 /DB_XREF=UI-R-BO1-ajv-h-05-0-UI.r1 /CLONE=UI-R-BO1-ajv-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.49106.1 /TIER=ConsEnd /STK=0 /UG=Rn.49106 /UG_TITLE=ESTs BF565954 1395904_at BF388148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388148 /DB_XREF=gi:11372972 /DB_XREF=UI-R-CA1-bby-g-12-0-UI.s1 /CLONE=UI-R-CA1-bby-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.60146.1 /TIER=ConsEnd /STK=0 /UG=Rn.60146 /UG_TITLE=ESTs BF388148 1395905_at AW920293 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920293 /DB_XREF=gi:8086102 /DB_XREF=EST351597 /CLONE=RGIGT54 /FEA=EST /CNT=3 /TID=Rn.55580.1 /TIER=ConsEnd /STK=0 /UG=Rn.55580 /UG_TITLE=ESTs AW920293 1395906_at BF290039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290039 /DB_XREF=gi:11221109 /DB_XREF=EST454630 /CLONE=RGIHM94 /FEA=EST /CNT=3 /TID=Rn.55877.1 /TIER=ConsEnd /STK=0 /UG=Rn.55877 /UG_TITLE=ESTs BF290039 zinc finger protein 652 Znf652 497984 NM_001080207 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395907_at BF416753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416753 /DB_XREF=gi:11404704 /DB_XREF=UI-R-CN0-bkz-a-08-0-UI.s1 /CLONE=UI-R-CN0-bkz-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.63131.1 /TIER=ConsEnd /STK=0 /UG=Rn.63131 /UG_TITLE=ESTs BF416753 1395908_at AW920951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920951 /DB_XREF=gi:8086769 /DB_XREF=EST352255 /CLONE=RGIHK18 /FEA=EST /CNT=3 /TID=Rn.55812.1 /TIER=ConsEnd /STK=0 /UG=Rn.55812 /UG_TITLE=ESTs AW920951 mesoderm induction early response 1, family member 2 Mier2 362841 NM_001108737 0003677 // DNA binding // inferred from electronic annotation 1395909_at BE105118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105118 /DB_XREF=gi:8497219 /DB_XREF=UI-R-BX0-asg-f-07-0-UI.s1 /CLONE=UI-R-BX0-asg-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.35489.1 /TIER=ConsEnd /STK=0 /UG=Rn.35489 /UG_TITLE=ESTs BE105118 1395910_at AI578372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578372 /DB_XREF=gi:4562748 /DB_XREF=UI-R-AD0-wh-f-07-0-UI.s1 /CLONE=UI-R-AD0-wh-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.39359.1 /TIER=ConsEnd /STK=0 /UG=Rn.39359 /UG_TITLE=ESTs AI578372 DOT1-like, histone H3 methyltransferase (S. cerevisiae) Dot1l 362831 NM_001108733 0016571 // histone methylation // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0042054 // histone methyltransferase activity // not recorded 1395911_at AI511220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511220 /DB_XREF=gi:4416919 /DB_XREF=UI-R-C3-sg-e-03-0-UI.s1 /CLONE=UI-R-C3-sg-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.27255.1 /TIER=ConsEnd /STK=0 /UG=Rn.27255 /UG_TITLE=ESTs AI511220 1395912_at BF419537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419537 /DB_XREF=gi:11407526 /DB_XREF=UI-R-CA0-bpd-b-04-0-UI.s1 /CLONE=UI-R-CA0-bpd-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.27708.1 /TIER=ConsEnd /STK=0 /UG=Rn.27708 /UG_TITLE=ESTs BF419537 1395913_at AI136400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136400 /DB_XREF=gi:3637177 /DB_XREF=UI-R-C2p-od-f-05-0-UI.s1 /CLONE=UI-R-C2p-od-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.27120.1 /TIER=ConsEnd /STK=0 /UG=Rn.27120 /UG_TITLE=ESTs AI136400 Acyl-Coenzyme A binding domain containing 4 Acbd4 303577 NM_001012013 0000062 // acyl-CoA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1395914_at AA684862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA684862 /DB_XREF=gi:2671460 /DB_XREF=EST105615 /CLONE=RPCAM27 /FEA=EST /CNT=3 /TID=Rn.74303.1 /TIER=ConsEnd /STK=0 /UG=Rn.74303 /UG_TITLE=ESTs AA684862 casein kinase 1, delta Csnk1d 64462 NM_139060 0000278 // mitotic cell cycle // traceable author statement /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0032922 // circadian regulation of gene expression // not recorded /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0042752 // regulation of circadian rhythm // not recorded /// 0042752 // regulation of circadian rhythm // inferred from sequence or structural similarity /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // traceable author statement /// 0005819 // spindle // traceable author statement /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // inferred from direct assay /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay /// 0051219 // phosphoprotein binding // inferred from direct assay 1395915_at BF416044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416044 /DB_XREF=gi:11404033 /DB_XREF=UI-R-CA0-bkh-e-05-0-UI.s1 /CLONE=UI-R-CA0-bkh-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.62901.1 /TIER=ConsEnd /STK=0 /UG=Rn.62901 /UG_TITLE=ESTs BF416044 1395916_at BF522383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522383 /DB_XREF=gi:11630350 /DB_XREF=UI-R-C3-sz-f-06-0-UI.r2 /CLONE=UI-R-C3-sz-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.41823.1 /TIER=ConsEnd /STK=0 /UG=Rn.41823 /UG_TITLE=ESTs, Weakly similar to A35210 ferroxidase (R.norvegicus) BF522383 coagulation factor VIII, procoagulant component F8 302470 NM_183331 0007155 // cell adhesion // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from direct assay /// 0007597 // blood coagulation, intrinsic pathway // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0031093 // platelet alpha granule lumen // not recorded 0004252 // serine-type endopeptidase activity // inferred from direct assay /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395917_at AI145510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145510 /DB_XREF=gi:3667309 /DB_XREF=UI-R-BT0-py-a-06-0-UI.s1 /CLONE=UI-R-BT0-py-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.28509.1 /TIER=ConsEnd /STK=0 /UG=Rn.28509 /UG_TITLE=ESTs AI145510 1395918_at BI292754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292754 /DB_XREF=gi:14953574 /DB_XREF=UI-R-DO0-ciy-m-20-0-UI.s1 /CLONE=UI-R-DO0-ciy-m-20-0-UI /FEA=EST /CNT=3 /TID=Rn.29409.1 /TIER=ConsEnd /STK=0 /UG=Rn.29409 /UG_TITLE=ESTs BI292754 1395919_at AI556163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556163 /DB_XREF=gi:4488526 /DB_XREF=UI-R-C2p-rd-d-01-0-UI.s1 /CLONE=UI-R-C2p-rd-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.39345.1 /TIER=ConsEnd /STK=0 /UG=Rn.39345 /UG_TITLE=ESTs AI556163 E2F-associated phosphoprotein Eapp 299043 NM_001106729 /// NM_001134987 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation 1395920_at AI547931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547931 /DB_XREF=gi:4465419 /DB_XREF=UI-R-C3-tb-a-12-0-UI.s1 /CLONE=UI-R-C3-tb-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.34605.1 /TIER=ConsEnd /STK=0 /UG=Rn.34605 /UG_TITLE=ESTs AI547931 transmembrane protein 106B Tmem106b 312132 NM_001004267 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1395921_at BE097603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097603 /DB_XREF=gi:8488534 /DB_XREF=UI-R-BO1-apz-e-12-0-UI.s1 /CLONE=UI-R-BO1-apz-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.43286.1 /TIER=ConsEnd /STK=0 /UG=Rn.43286 /UG_TITLE=ESTs BE097603 ubiquitin specific peptidase 35 Usp35 308834 XM_001064027 /// XM_238899 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation 1395922_at BF412539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412539 /DB_XREF=gi:11400528 /DB_XREF=UI-R-BT1-bno-h-02-0-UI.s1 /CLONE=UI-R-BT1-bno-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.50188.1 /TIER=ConsEnd /STK=0 /UG=Rn.50188 /UG_TITLE=ESTs BF412539 1395923_at BF416343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416343 /DB_XREF=gi:11404332 /DB_XREF=UI-R-CA0-bkj-d-07-0-UI.s1 /CLONE=UI-R-CA0-bkj-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.62993.1 /TIER=ConsEnd /STK=0 /UG=Rn.62993 /UG_TITLE=ESTs, Highly similar to IDN3-B (H.sapiens) BF416343 0005488 // binding // inferred from electronic annotation 1395924_at AI575421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575421 /DB_XREF=gi:4559797 /DB_XREF=UI-R-Y0-vg-b-07-0-UI.s1 /CLONE=UI-R-Y0-vg-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.29447.1 /TIER=ConsEnd /STK=0 /UG=Rn.29447 /UG_TITLE=ESTs AI575421 1395925_s_at BF417945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417945 /DB_XREF=gi:11405934 /DB_XREF=UI-R-CA0-bly-d-08-0-UI.s1 /CLONE=UI-R-CA0-bly-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.63298.1 /TIER=ConsEnd /STK=0 /UG=Rn.63298 /UG_TITLE=ESTs, Highly similar to SP02 RAT PRESYNAPTIC PROTEIN SAP102 (R.norvegicus) BF417945 discs, large homolog 3 (Drosophila) Dlg3 58948 NM_031639 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // traceable author statement /// 0030426 // growth cone // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043198 // dendritic shaft // inferred from direct assay /// 0045202 // synapse // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0019904 // protein domain specific binding // inferred from direct assay /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction 1395926_at AW919941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919941 /DB_XREF=gi:8085746 /DB_XREF=EST351245 /CLONE=RGIGO80 /FEA=EST /CNT=3 /TID=Rn.55494.1 /TIER=ConsEnd /STK=0 /UG=Rn.55494 /UG_TITLE=ESTs AW919941 1395927_at BE116199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116199 /DB_XREF=gi:8508304 /DB_XREF=UI-R-BS1-aya-e-10-0-UI.s1 /CLONE=UI-R-BS1-aya-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.43988.1 /TIER=ConsEnd /STK=0 /UG=Rn.43988 /UG_TITLE=ESTs BE116199 1395928_at BE102495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102495 /DB_XREF=gi:8494594 /DB_XREF=UI-R-BT1-aqn-c-12-0-UI.s1 /CLONE=UI-R-BT1-aqn-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.50316.1 /TIER=ConsEnd /STK=0 /UG=Rn.50316 /UG_TITLE=ESTs BE102495 1395929_at AW535139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535139 /DB_XREF=gi:7177553 /DB_XREF=UI-R-C4-als-f-07-0-UI.s1 /CLONE=UI-R-C4-als-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.48431.1 /TIER=ConsEnd /STK=0 /UG=Rn.48431 /UG_TITLE=ESTs AW535139 zinc finger protein 296 Znf296 365511 XM_001075949 /// XM_345065 0007283 // spermatogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1395930_at BI299765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299765 /DB_XREF=gi:14976045 /DB_XREF=UI-R-CV2-chx-a-04-0-UI.s1 /CLONE=UI-R-CV2-chx-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.66260.1 /TIER=ConsEnd /STK=0 /UG=Rn.66260 /UG_TITLE=ESTs BI299765 1395931_at BF408949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408949 /DB_XREF=gi:11396924 /DB_XREF=UI-R-BJ2-bpn-c-10-0-UI.s1 /CLONE=UI-R-BJ2-bpn-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.28047.1 /TIER=ConsEnd /STK=0 /UG=Rn.28047 /UG_TITLE=ESTs BF408949 1395932_at BF413103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413103 /DB_XREF=gi:11401092 /DB_XREF=UI-R-CA0-bod-f-12-0-UI.s1 /CLONE=UI-R-CA0-bod-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.28448.1 /TIER=ConsEnd /STK=0 /UG=Rn.28448 /UG_TITLE=ESTs, Moderately similar to I52084 thymosin beta-4 precursor - rat (R.norvegicus) BF413103 1395933_at BI289822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289822 /DB_XREF=gi:14947795 /DB_XREF=UI-R-DK0-cfo-f-08-0-UI.s1 /CLONE=UI-R-DK0-cfo-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.29874.1 /TIER=ConsEnd /STK=0 /UG=Rn.29874 /UG_TITLE=ESTs BI289822 1395934_at BF415982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415982 /DB_XREF=gi:11403971 /DB_XREF=UI-R-CA0-bkp-f-04-0-UI.s1 /CLONE=UI-R-CA0-bkp-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.39026.1 /TIER=ConsEnd /STK=0 /UG=Rn.39026 /UG_TITLE=ESTs BF415982 similar to coiled-coil domain containing 9 LOC684934 684934 XM_001062632 1395935_at BF282716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282716 /DB_XREF=gi:11213786 /DB_XREF=EST447307 /CLONE=RGIDS10 /FEA=EST /CNT=3 /TID=Rn.55220.1 /TIER=ConsEnd /STK=0 /UG=Rn.55220 /UG_TITLE=ESTs BF282716 1395936_at BF392796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392796 /DB_XREF=gi:11377654 /DB_XREF=UI-R-CA0-bfo-d-03-0-UI.s1 /CLONE=UI-R-CA0-bfo-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.57238.1 /TIER=ConsEnd /STK=0 /UG=Rn.57238 /UG_TITLE=ESTs BF392796 1395937_at AI045928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045928 /DB_XREF=gi:3292747 /DB_XREF=UI-R-C1-km-c-04-0-UI.s1 /CLONE=UI-R-C1-km-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.22543.1 /TIER=ConsEnd /STK=0 /UG=Rn.22543 /UG_TITLE=ESTs, Highly similar to BIG1_HUMAN BREFELDIN A-INHIBITED GUANINE NUCLEOTIDE-EXCHANGE PROTEIN 1 (BREFELDIN A-INHIBITED GEP 1) (P200 ARF-GEP1) (P200 ARF GUANINE NUCLEOTIDE EXCHANGE FACTOR) (H.sapiens) AI045928 ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited) Arfgef1 312915 XM_001066125 /// XM_232614 0032012 // regulation of ARF protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005086 // ARF guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008060 // ARF GTPase activator activity // not recorded /// 0017022 // myosin binding // not recorded 1395938_at AW529739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529739 /DB_XREF=gi:7172153 /DB_XREF=UI-R-BU0-amr-g-06-0-UI.s1 /CLONE=UI-R-BU0-amr-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.39108.1 /TIER=ConsEnd /STK=0 /UG=Rn.39108 /UG_TITLE=ESTs AW529739 1395939_at BE103614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103614 /DB_XREF=gi:8495714 /DB_XREF=UI-R-BX0-arg-d-02-0-UI.s1 /CLONE=UI-R-BX0-arg-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.43293.1 /TIER=ConsEnd /STK=0 /UG=Rn.43293 /UG_TITLE=ESTs BE103614 1395940_at AA956595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956595 /DB_XREF=gi:4239069 /DB_XREF=UI-R-E1-fk-d-08-0-UI.s1 /CLONE=UI-R-E1-fk-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.49877.1 /TIER=ConsEnd /STK=0 /UG=Rn.49877 /UG_TITLE=ESTs, Weakly similar to T34057 hypothetical protein F28B3.5 - Caenorhabditis elegans (C.elegans) AA956595 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon) Agpat5 306582 NM_001134744 0006639 // acylglycerol metabolic process // inferred from electronic annotation /// 0006639 // acylglycerol metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // inferred from electronic annotation /// 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0046027 // phospholipid:diacylglycerol acyltransferase activity // not recorded 1395941_at BF542687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542687 /DB_XREF=gi:11633794 /DB_XREF=UI-R-C3-sm-g-12-0-UI.r1 /CLONE=UI-R-C3-sm-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.63807.1 /TIER=ConsEnd /STK=0 /UG=Rn.63807 /UG_TITLE=ESTs, Weakly similar to T32221 hypothetical protein T23B12.6 - Caenorhabditis elegans (C.elegans) BF542687 potassium channel tetramerisation domain containing 3 Kctd3 305055 NM_001107199 0006813 // potassium ion transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1395942_at BF564798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564798 /DB_XREF=gi:11674528 /DB_XREF=UI-R-BS0-amk-b-10-0-UI.r1 /CLONE=UI-R-BS0-amk-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.64176.1 /TIER=ConsEnd /STK=0 /UG=Rn.64176 /UG_TITLE=ESTs BF564798 1395943_at AI502219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502219 /DB_XREF=gi:4400070 /DB_XREF=UI-R-C0-iz-d-12-0-UI.s1 /CLONE=UI-R-C0-iz-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.25544.1 /TIER=ConsEnd /STK=0 /UG=Rn.25544 /UG_TITLE=ESTs, Weakly similar to sperm associated antigen 1; TPR-containing protein involved in spermatogenesis (Mus musculus) (M.musculus) AI502219 zinc finger CCCH-type containing 7B Zc3h7b 315158 NM_001130695 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395944_at AI548667 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548667 /DB_XREF=gi:4466155 /DB_XREF=UI-R-C3-tp-d-06-0-UI.s1 /CLONE=UI-R-C3-tp-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.41999.1 /TIER=ConsEnd /STK=0 /UG=Rn.41999 /UG_TITLE=ESTs AI548667 similar to Putative protein C21orf45 RGD1310778 288272 NM_001127523 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 1395945_at AW535178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535178 /DB_XREF=gi:7177592 /DB_XREF=UI-R-C4-alu-b-02-0-UI.s1 /CLONE=UI-R-C4-alu-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.43839.1 /TIER=ConsEnd /STK=0 /UG=Rn.43839 /UG_TITLE=ESTs AW535178 1395946_at AW254429 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254429 /DB_XREF=gi:6598020 /DB_XREF=UI-R-BJ0-aei-g-12-0-UI.s1 /CLONE=UI-R-BJ0-aei-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.44778.1 /TIER=ConsEnd /STK=0 /UG=Rn.44778 /UG_TITLE=ESTs, Highly similar to 43 KD POSTSYNAPTIC PROTEIN (M.musculus) AW254429 receptor-associated protein of the synapse Rapsn 362161 NM_001108584 0007268 // synaptic transmission // inferred from electronic annotation /// 0007271 // synaptic transmission, cholinergic // not recorded 0005794 // Golgi apparatus // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0031594 // neuromuscular junction // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0033130 // acetylcholine receptor binding // inferred from electronic annotation /// 0033130 // acetylcholine receptor binding // not recorded /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1395947_at BE115981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115981 /DB_XREF=gi:8508091 /DB_XREF=UI-R-BS1-axy-b-11-0-UI.s1 /CLONE=UI-R-BS1-axy-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.34847.1 /TIER=ConsEnd /STK=0 /UG=Rn.34847 /UG_TITLE=ESTs BE115981 Replication protein A1 Rpa1 287524 NM_001047843 0000718 // nucleotide-excision repair, DNA damage removal // not recorded /// 0000724 // double-strand break repair via homologous recombination // inferred from electronic annotation /// 0000724 // double-strand break repair via homologous recombination // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0006260 // DNA replication // inferred by curator /// 0006260 // DNA replication // not recorded /// 0006260 // DNA replication // inferred from electronic annotation /// 0006297 // nucleotide-excision repair, DNA gap filling // not recorded /// 0007126 // meiosis // inferred from electronic annotation /// 0007126 // meiosis // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded /// 0048873 // homeostasis of number of cells within a tissue // inferred from electronic annotation /// 0048873 // homeostasis of number of cells within a tissue // not recorded /// 0051276 // chromosome organization // inferred from electronic annotation /// 0051276 // chromosome organization // not recorded 0000793 // condensed chromosome // not recorded /// 0000793 // condensed chromosome // inferred from electronic annotation /// 0000794 // condensed nuclear chromosome // inferred from electronic annotation /// 0000794 // condensed nuclear chromosome // not recorded /// 0001673 // male germ cell nucleus // inferred from electronic annotation /// 0001673 // male germ cell nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005662 // DNA replication factor A complex // inferred from direct assay /// 0005662 // DNA replication factor A complex // not recorded /// 0005662 // DNA replication factor A complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0016605 // PML body // inferred from electronic annotation /// 0016605 // PML body // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395948_at BF410644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410644 /DB_XREF=gi:11398577 /DB_XREF=UI-R-CA0-bma-f-08-0-UI.s1 /CLONE=UI-R-CA0-bma-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.43668.1 /TIER=ConsEnd /STK=0 /UG=Rn.43668 /UG_TITLE=ESTs BF410644 1395949_at AI501320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501320 /DB_XREF=gi:4399171 /DB_XREF=UI-R-C2p-ru-a-08-0-UI.s1 /CLONE=UI-R-C2p-ru-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.43975.1 /TIER=ConsEnd /STK=0 /UG=Rn.43975 /UG_TITLE=ESTs AI501320 1395950_at BG380812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380812 /DB_XREF=gi:13305284 /DB_XREF=UI-R-CT0-bub-f-11-0-UI.s1 /CLONE=UI-R-CT0-bub-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.44949.1 /TIER=ConsEnd /STK=0 /UG=Rn.44949 /UG_TITLE=ESTs BG380812 1395951_at BF289714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289714 /DB_XREF=gi:11220784 /DB_XREF=EST454305 /CLONE=RGIHK21 /FEA=EST /CNT=3 /TID=Rn.43129.1 /TIER=ConsEnd /STK=0 /UG=Rn.43129 /UG_TITLE=ESTs BF289714 1395952_at BF393396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393396 /DB_XREF=gi:11378257 /DB_XREF=UI-R-CA0-bgc-d-09-0-UI.s1 /CLONE=UI-R-CA0-bgc-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.58045.1 /TIER=ConsEnd /STK=0 /UG=Rn.58045 /UG_TITLE=ESTs BF393396 1395953_at AA955517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955517 /DB_XREF=gi:4237912 /DB_XREF=UI-R-E1-fa-e-04-0-UI.s1 /CLONE=UI-R-E1-fa-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.8838.1 /TIER=ConsEnd /STK=0 /UG=Rn.8838 /UG_TITLE=ESTs AA955517 1395954_at BF288399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288399 /DB_XREF=gi:11219469 /DB_XREF=EST452990 /CLONE=RGIGT37 /FEA=EST /CNT=3 /TID=Rn.55578.1 /TIER=ConsEnd /STK=0 /UG=Rn.55578 /UG_TITLE=ESTs BF288399 1395955_at BF522313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522313 /DB_XREF=gi:11630280 /DB_XREF=UI-R-C2p-qn-d-10-0-UI.r1 /CLONE=UI-R-C2p-qn-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.65446.1 /TIER=ConsEnd /STK=0 /UG=Rn.65446 /UG_TITLE=ESTs BF522313 C1q and tumor necrosis factor related protein 4 C1qtnf4 311184 NM_001107745 1395956_at BG372430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372430 /DB_XREF=gi:13268967 /DB_XREF=UI-R-CV1-bsc-f-06-0-UI.s1 /CLONE=UI-R-CV1-bsc-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.66166.1 /TIER=ConsEnd /STK=0 /UG=Rn.66166 /UG_TITLE=ESTs BG372430 1395957_at AW532142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532142 /DB_XREF=gi:7174556 /DB_XREF=UI-R-C4-ali-h-02-0-UI.s1 /CLONE=UI-R-C4-ali-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.48223.1 /TIER=ConsEnd /STK=0 /UG=Rn.48223 /UG_TITLE=ESTs AW532142 1395958_at BF396619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396619 /DB_XREF=gi:11381594 /DB_XREF=UI-R-BS2-bea-c-01-0-UI.s1 /CLONE=UI-R-BS2-bea-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.59347.1 /TIER=ConsEnd /STK=0 /UG=Rn.59347 /UG_TITLE=ESTs, Moderately similar to T00074 hypothetical protein KIAA0460 (H.sapiens) BF396619 regulation of nuclear pre-mRNA domain containing 2-like LOC100364568 100364568 XR_085765 1395959_at BI298954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298954 /DB_XREF=gi:14975234 /DB_XREF=UI-R-CV2-chp-e-02-0-UI.s1 /CLONE=UI-R-CV2-chp-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.66919.1 /TIER=ConsEnd /STK=0 /UG=Rn.66919 /UG_TITLE=ESTs BI298954 1395960_at BI301495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301495 /DB_XREF=gi:14977775 /DB_XREF=UI-R-DN0-cit-m-17-0-UI.s1 /CLONE=UI-R-DN0-cit-m-17-0-UI /FEA=EST /CNT=3 /TID=Rn.49898.1 /TIER=ConsEnd /STK=0 /UG=Rn.49898 /UG_TITLE=ESTs BI301495 similar to epidermodysplasia verruciformis 2 LOC688276 688276 NM_001126301 0016021 // integral to membrane // inferred from electronic annotation 1395961_at BI298336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298336 /DB_XREF=gi:14974616 /DB_XREF=UI-R-CV2-cho-b-03-0-UI.s1 /CLONE=UI-R-CV2-cho-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.73435.1 /TIER=ConsEnd /STK=0 /UG=Rn.73435 /UG_TITLE=ESTs BI298336 1395962_at BI278960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278960 /DB_XREF=gi:14926315 /DB_XREF=UI-R-DB0-byt-c-01-0-UI.s1 /CLONE=UI-R-DB0-byt-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.51996.1 /TIER=ConsEnd /STK=0 /UG=Rn.51996 /UG_TITLE=ESTs BI278960 coiled-coil-helix-coiled-coil-helix domain containing 5 Chchd5 296147 NM_001106509 1395963_at BI303658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303658 /DB_XREF=gi:14979938 /DB_XREF=UI-R-DQ0-cja-p-08-0-UI.s1 /CLONE=UI-R-DQ0-cja-p-08-0-UI /FEA=EST /CNT=3 /TID=Rn.36462.1 /TIER=ConsEnd /STK=0 /UG=Rn.36462 /UG_TITLE=ESTs, Weakly similar to JC5399 dual leucine zipper kinase (R.norvegicus) BI303658 1395964_at BI301241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301241 /DB_XREF=gi:14977521 /DB_XREF=UI-R-DK0-cek-d-01-0-UI.s2 /CLONE=UI-R-DK0-cek-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.41069.1 /TIER=ConsEnd /STK=0 /UG=Rn.41069 /UG_TITLE=ESTs BI301241 1395965_at BI298589 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298589 /DB_XREF=gi:14974869 /DB_XREF=UI-R-CV2-chl-c-02-0-UI.s1 /CLONE=UI-R-CV2-chl-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.46860.1 /TIER=ConsEnd /STK=0 /UG=Rn.46860 /UG_TITLE=ESTs BI298589 1395966_at BI282914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282914 /DB_XREF=gi:14934152 /DB_XREF=UI-R-CW0s-ccc-h-01-0-UI.s1 /CLONE=UI-R-CW0s-ccc-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.48217.1 /TIER=ConsEnd /STK=0 /UG=Rn.48217 /UG_TITLE=ESTs BI282914 potassium channel tetramerisation domain containing 14 Kctd14 308836 XM_001064247 /// XM_218935 0006813 // potassium ion transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1395967_at BI275057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275057 /DB_XREF=gi:14886548 /DB_XREF=UI-R-CX0-bxb-b-06-0-UI.s1 /CLONE=UI-R-CX0-bxb-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.49704.1 /TIER=ConsEnd /STK=0 /UG=Rn.49704 /UG_TITLE=ESTs BI275057 low density lipoprotein receptor adaptor protein 1 Ldlrap1 500564 NM_001109271 0042632 // cholesterol homeostasis // not recorded /// 0043393 // regulation of protein binding // not recorded /// 0048260 // positive regulation of receptor-mediated endocytosis // not recorded /// 0090118 // receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport // not recorded 0005769 // early endosome // not recorded /// 0005829 // cytosol // not recorded /// 0009925 // basal plasma membrane // not recorded /// 0030121 // AP-1 adaptor complex // not recorded /// 0030122 // AP-2 adaptor complex // not recorded 0001784 // phosphotyrosine binding // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0030159 // receptor signaling complex scaffold activity // not recorded /// 0030276 // clathrin binding // not recorded 1395968_at BI294877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294877 /DB_XREF=gi:14957760 /DB_XREF=UI-R-DK0-ced-b-10-0-UI.s1 /CLONE=UI-R-DK0-ced-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.52765.1 /TIER=ConsEnd /STK=0 /UG=Rn.52765 /UG_TITLE=ESTs, Weakly similar to A59295 unconventional myosin-15 - mouse (M.musculus) BI294877 similar to mKIAA1783 protein RGD1560214 690323 XR_085573 /// XR_085975 1395969_at BG376890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376890 /DB_XREF=gi:13301362 /DB_XREF=UI-R-CA1-bli-f-01-0-UI.s1 /CLONE=UI-R-CA1-bli-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.57948.1 /TIER=ConsEnd /STK=0 /UG=Rn.57948 /UG_TITLE=ESTs BG376890 1395970_at BI297496 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297496 /DB_XREF=gi:14962921 /DB_XREF=UI-R-CV2-chc-h-11-0-UI.s1 /CLONE=UI-R-CV2-chc-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.66245.1 /TIER=ConsEnd /STK=0 /UG=Rn.66245 /UG_TITLE=ESTs, Moderately similar to G01496 transcription factor IIIA (H.sapiens) BI297496 1395971_at BI291276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291276 /DB_XREF=gi:14950663 /DB_XREF=UI-R-CV2-cgn-f-07-0-UI.s1 /CLONE=UI-R-CV2-cgn-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.73419.1 /TIER=ConsEnd /STK=0 /UG=Rn.73419 /UG_TITLE=ESTs BI291276 1395972_at BI294455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294455 /DB_XREF=gi:14956922 /DB_XREF=UI-R-DK0-ceo-c-03-0-UI.s1 /CLONE=UI-R-DK0-ceo-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.26707.1 /TIER=ConsEnd /STK=0 /UG=Rn.26707 /UG_TITLE=ESTs BI294455 1395973_at AI236099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236099 /DB_XREF=gi:3829605 /DB_XREF=EST232661 /CLONE=ROVDB40 /FEA=EST /CNT=3 /TID=Rn.25537.1 /TIER=ConsEnd /STK=0 /UG=Rn.25537 /UG_TITLE=ESTs AI236099 1395974_at BE096056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096056 /DB_XREF=gi:8486987 /DB_XREF=UI-R-BU0-apk-h-11-0-UI.s1 /CLONE=UI-R-BU0-apk-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.49392.1 /TIER=ConsEnd /STK=0 /UG=Rn.49392 /UG_TITLE=ESTs BE096056 WD repeat domain 81 Wdr81 303312 NM_001134360 1395975_at AI235040 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235040 /DB_XREF=gi:3828546 /DB_XREF=EST231602 /CLONE=ROVCM58 /FEA=EST /CNT=3 /TID=Rn.65166.1 /TIER=ConsEnd /STK=0 /UG=Rn.65166 /UG_TITLE=ESTs AI235040 1395976_at AI177017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177017 /DB_XREF=gi:3727655 /DB_XREF=EST220624 /CLONE=ROVBZ80 /FEA=EST /CNT=3 /TID=Rn.23848.1 /TIER=ConsEnd /STK=0 /UG=Rn.23848 /UG_TITLE=ESTs, Weakly similar to A34581 oxysterol-binding protein (H.sapiens) AI177017 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 Plekha8 500132 NM_001109235 0046836 // glycolipid transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0017089 // glycolipid transporter activity // inferred from electronic annotation /// 0051861 // glycolipid binding // inferred from electronic annotation 1395977_at AW530722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530722 /DB_XREF=gi:7173136 /DB_XREF=UI-R-BT1-akq-f-08-0-UI.s1 /CLONE=UI-R-BT1-akq-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.47528.1 /TIER=ConsEnd /STK=0 /UG=Rn.47528 /UG_TITLE=ESTs AW530722 1395978_at AW920969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920969 /DB_XREF=gi:8086787 /DB_XREF=EST352273 /CLONE=RGIHK49 /FEA=EST /CNT=3 /TID=Rn.55819.1 /TIER=ConsEnd /STK=0 /UG=Rn.55819 /UG_TITLE=ESTs AW920969 C-type lectin domain family 1, member a Clec1a 500337 NM_001109253 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1395979_at BF403475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403475 /DB_XREF=gi:11391450 /DB_XREF=UI-R-CA1-biz-b-08-0-UI.s1 /CLONE=UI-R-CA1-biz-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.57708.1 /TIER=ConsEnd /STK=0 /UG=Rn.57708 /UG_TITLE=ESTs BF403475 1395980_at BF393243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393243 /DB_XREF=gi:11378103 /DB_XREF=UI-R-CA0-bfs-e-04-0-UI.s1 /CLONE=UI-R-CA0-bfs-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.48295.1 /TIER=ConsEnd /STK=0 /UG=Rn.48295 /UG_TITLE=ESTs BF393243 1395981_at AW919934 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919934 /DB_XREF=gi:8085739 /DB_XREF=EST351238 /CLONE=RGIGO72 /FEA=EST /CNT=3 /TID=Rn.55491.1 /TIER=ConsEnd /STK=0 /UG=Rn.55491 /UG_TITLE=ESTs AW919934 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1395982_at BF392165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392165 /DB_XREF=gi:11377022 /DB_XREF=UI-R-CA0-bff-a-02-0-UI.s1 /CLONE=UI-R-CA0-bff-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.62587.1 /TIER=ConsEnd /STK=0 /UG=Rn.62587 /UG_TITLE=ESTs, Moderately similar to S26058 probable transforming protein (H.sapiens) BF392165 nucleoporin 214 Nup214 296634 NM_001168559 0006406 // mRNA export from nucleus // not recorded /// 0006606 // protein import into nucleus // not recorded /// 0006611 // protein export from nucleus // not recorded /// 0051726 // regulation of cell cycle // not recorded 0005829 // cytosol // not recorded 0005487 // nucleocytoplasmic transporter activity // not recorded /// 0005515 // protein binding // not recorded 1395983_at BF407722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407722 /DB_XREF=gi:11395697 /DB_XREF=UI-R-BJ2-bqv-g-09-0-UI.s1 /CLONE=UI-R-BJ2-bqv-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.55953.1 /TIER=ConsEnd /STK=0 /UG=Rn.55953 /UG_TITLE=ESTs BF407722 Family with sequence similarity 82, member A1 Fam82a1 313840 NM_001037200 0000922 // spindle pole // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1395984_at AI043648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI043648 /DB_XREF=gi:3290383 /DB_XREF=UI-R-C0-jl-e-09-0-UI.s1 /CLONE=UI-R-C0-jl-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.30578.1 /TIER=ConsEnd /STK=0 /UG=Rn.30578 /UG_TITLE=ESTs AI043648 similar to hypothetical protein FLJ21827 RGD1307682 300675 NM_001024760 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0005932 // microtubule basal body // inferred from electronic annotation /// 0031512 // motile primary cilium // inferred from electronic annotation /// 0031512 // motile primary cilium // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1395985_at AI175636 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175636 /DB_XREF=gi:3726274 /DB_XREF=EST219194 /CLONE=ROVBC94 /FEA=EST /CNT=3 /TID=Rn.36885.1 /TIER=ConsEnd /STK=0 /UG=Rn.36885 /UG_TITLE=ESTs, Weakly similar to PGN_HUMAN PARAPLEGIN (SPASTIC PARAPLEGIA PROTEIN 7) (H.sapiens) AI175636 spastic paraplegia 7 homolog (human) Spg7 353231 NM_181388 0006508 // proteolysis // inferred from electronic annotation /// 0007005 // mitochondrion organization // not recorded /// 0008089 // anterograde axon cargo transport // not recorded /// 0030163 // protein catabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395986_at BF391439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391439 /DB_XREF=gi:11376292 /DB_XREF=UI-R-CA1-bcx-e-02-0-UI.s1 /CLONE=UI-R-CA1-bcx-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.46211.1 /TIER=ConsEnd /STK=0 /UG=Rn.46211 /UG_TITLE=ESTs, Weakly similar to T13953 MEGF5 protein - rat (R.norvegicus) BF391439 slit homolog 2 (Drosophila) Slit2 360272 NM_022632 0001554 // luteolysis // not recorded /// 0001656 // metanephros development // not recorded /// 0001657 // ureteric bud development // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0001933 // negative regulation of protein phosphorylation // not recorded /// 0002042 // cell migration involved in sprouting angiogenesis // not recorded /// 0002689 // negative regulation of leukocyte chemotaxis // not recorded /// 0006935 // chemotaxis // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007411 // axon guidance // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0008045 // motor axon guidance // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0010593 // negative regulation of lamellipodium assembly // not recorded /// 0010596 // negative regulation of endothelial cell migration // not recorded /// 0010629 // negative regulation of gene expression // not recorded /// 0014912 // negative regulation of smooth muscle cell migration // not recorded /// 0016337 // cell-cell adhesion // not recorded /// 0021510 // spinal cord development // inferred from expression pattern /// 0021772 // olfactory bulb development // not recorded /// 0021834 // chemorepulsion involved in embryonic olfactory bulb interneuron migration // not recorded /// 0021836 // chemorepulsion involved in postnatal olfactory bulb interneuron migration // not recorded /// 0021972 // corticospinal neuron axon guidance through spinal cord // not recorded /// 0022029 // telencephalon cell migration // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0030336 // negative regulation of cell migration // not recorded /// 0030837 // negative regulation of actin filament polymerization // not recorded /// 0031290 // retinal ganglion cell axon guidance // not recorded /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // not recorded /// 0033563 // dorsal/ventral axon guidance // not recorded /// 0035385 // Roundabout signaling pathway // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043116 // negative regulation of vascular permeability // not recorded /// 0048754 // branching morphogenesis of a tube // not recorded /// 0048812 // neuron projection morphogenesis // not recorded /// 0048846 // axon extension involved in axon guidance // not recorded /// 0050728 // negative regulation of inflammatory response // inferred from mutant phenotype /// 0050919 // negative chemotaxis // not recorded /// 0050929 // induction of negative chemotaxis // not recorded /// 0051058 // negative regulation of small GTPase mediated signal transduction // not recorded /// 0051414 // response to cortisol stimulus // not recorded /// 0060603 // mammary gland duct morphogenesis // not recorded /// 0060763 // mammary duct terminal end bud growth // not recorded /// 0070100 // negative regulation of chemokine-mediated signaling pathway // not recorded /// 0071504 // cellular response to heparin // not recorded /// 0071672 // negative regulation of smooth muscle cell chemotaxis // not recorded /// 0071676 // negative regulation of mononuclear cell migration // not recorded /// 0090024 // negative regulation of neutrophil chemotaxis // not recorded /// 0090260 // negative regulation of retinal ganglion cell axon guidance // not recorded /// 0090288 // negative regulation of cellular response to growth factor stimulus // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0004963 // follicle-stimulating hormone receptor activity // inferred from electronic annotation /// 0005095 // GTPase inhibitor activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008201 // heparin binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043237 // laminin-1 binding // not recorded /// 0043394 // proteoglycan binding // not recorded /// 0043395 // heparan sulfate proteoglycan binding // inferred from direct assay /// 0045499 // chemorepellent activity // not recorded /// 0048495 // Roundabout binding // not recorded 1395987_at BF391811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391811 /DB_XREF=gi:11376666 /DB_XREF=UI-R-CA1-bcu-h-03-0-UI.s1 /CLONE=UI-R-CA1-bcu-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.49816.1 /TIER=ConsEnd /STK=0 /UG=Rn.49816 /UG_TITLE=ESTs BF391811 1395988_at BE105393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105393 /DB_XREF=gi:8497495 /DB_XREF=UI-R-BO1-asn-c-05-0-UI.s1 /CLONE=UI-R-BO1-asn-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.45176.1 /TIER=ConsEnd /STK=0 /UG=Rn.45176 /UG_TITLE=ESTs, Weakly similar to T47144 hypothetical protein DKFZp761E1347.1 (H.sapiens) BE105393 zinc finger, DHHC-type containing 22 Zdhhc22 299211 NM_001039325 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1395989_at BF409121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409121 /DB_XREF=gi:11397096 /DB_XREF=UI-R-BT1-bkm-c-03-0-UI.s1 /CLONE=UI-R-BT1-bkm-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.61255.1 /TIER=ConsEnd /STK=0 /UG=Rn.61255 /UG_TITLE=ESTs BF409121 G elongation factor, mitochondrial 2 Gfm2 294672 XM_002725914 /// XM_226707 0006412 // translation // inferred from electronic annotation /// 0032543 // mitochondrial translation // not recorded /// 0032543 // mitochondrial translation // inferred from sequence or structural similarity /// 0032543 // mitochondrial translation // inferred from electronic annotation /// 0032790 // ribosome disassembly // not recorded /// 0032790 // ribosome disassembly // inferred from sequence or structural similarity /// 0032790 // ribosome disassembly // inferred from electronic annotation /// 0070125 // mitochondrial translational elongation // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // not recorded /// 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0005525 // GTP binding // inferred from electronic annotation 1395990_at AA819145 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819145 /DB_XREF=gi:4227807 /DB_XREF=UI-R-A0-ba-d-01-0-UI.s1 /CLONE=UI-R-A0-ba-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.34224.1 /TIER=ConsEnd /STK=0 /UG=Rn.34224 /UG_TITLE=ESTs AA819145 Snf2-related CREBBP activator protein Srcap 361652 XM_001080260 /// XM_341932 0043234 // protein complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1395991_at BE107556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107556 /DB_XREF=gi:8499661 /DB_XREF=UI-R-CA0-awv-b-02-0-UI.s1 /CLONE=UI-R-CA0-awv-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.50806.1 /TIER=ConsEnd /STK=0 /UG=Rn.50806 /UG_TITLE=ESTs BE107556 RIMS binding protein 2 Rimbp2 266780 NM_001100488 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 1395992_at BF403041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403041 /DB_XREF=gi:11391016 /DB_XREF=UI-R-CA0-bhl-g-11-0-UI.s1 /CLONE=UI-R-CA0-bhl-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.60179.1 /TIER=ConsEnd /STK=0 /UG=Rn.60179 /UG_TITLE=ESTs BF403041 1395993_at AI764408 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764408 /DB_XREF=gi:5210391 /DB_XREF=UI-R-Y0-abk-b-03-0-UI.s1 /CLONE=UI-R-Y0-abk-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.64889.1 /TIER=ConsEnd /STK=0 /UG=Rn.64889 /UG_TITLE=ESTs AI764408 serine/threonine kinase 16 Stk16 286927 NM_173142 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation 1395994_at BE116471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116471 /DB_XREF=gi:8508576 /DB_XREF=UI-R-BS1-ayg-f-07-0-UI.s1 /CLONE=UI-R-BS1-ayg-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.45199.1 /TIER=ConsEnd /STK=0 /UG=Rn.45199 /UG_TITLE=ESTs BE116471 1395995_at BF390557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390557 /DB_XREF=gi:11375403 /DB_XREF=UI-R-CA1-bcc-d-12-0-UI.s1 /CLONE=UI-R-CA1-bcc-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.62041.1 /TIER=ConsEnd /STK=0 /UG=Rn.62041 /UG_TITLE=ESTs BF390557 1395996_at BF393838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393838 /DB_XREF=gi:11378701 /DB_XREF=UI-R-CA0-bgv-e-09-0-UI.s1 /CLONE=UI-R-CA0-bgv-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.63287.1 /TIER=ConsEnd /STK=0 /UG=Rn.63287 /UG_TITLE=ESTs BF393838 1395997_at BF392893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392893 /DB_XREF=gi:11377752 /DB_XREF=UI-R-CA0-bfq-e-02-0-UI.s1 /CLONE=UI-R-CA0-bfq-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.50834.1 /TIER=ConsEnd /STK=0 /UG=Rn.50834 /UG_TITLE=ESTs, Weakly similar to KINN RAT NEURONAL KINESIN HEAVY CHAIN (R.norvegicus) BF392893 Kinesin family member 5C Kif5c 311024 NM_001107730 0007018 // microtubule-based movement // inferred from electronic annotation /// 0008045 // motor axon guidance // inferred from electronic annotation /// 0008045 // motor axon guidance // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0035253 // ciliary rootlet // inferred from electronic annotation /// 0035253 // ciliary rootlet // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0034190 // apolipoprotein receptor binding // inferred from physical interaction 1395998_at BE114011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114011 /DB_XREF=gi:8506116 /DB_XREF=UI-R-CA0-axn-a-06-0-UI.s1 /CLONE=UI-R-CA0-axn-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.52181.1 /TIER=ConsEnd /STK=0 /UG=Rn.52181 /UG_TITLE=ESTs, Highly similar to NO56_HUMAN NUCLEOLAR PROTEIN NOP56 (H.sapiens) BE114011 NOP56 ribonucleoprotein homolog (yeast) Nop56 362214 NM_001025732 0005732 // small nucleolar ribonucleoprotein complex // not recorded /// 0070761 // pre-snoRNP complex // not recorded 0005515 // protein binding // not recorded /// 0030515 // snoRNA binding // not recorded 1395999_at BF419607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419607 /DB_XREF=gi:11407596 /DB_XREF=UI-R-CA0-bpe-b-05-0-UI.s1 /CLONE=UI-R-CA0-bpe-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.63656.1 /TIER=ConsEnd /STK=0 /UG=Rn.63656 /UG_TITLE=ESTs BF419607 1396000_at AI704583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI704583 /DB_XREF=gi:4992483 /DB_XREF=UI-R-AC0-yp-g-08-0-UI.s1 /CLONE=UI-R-AC0-yp-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.40801.1 /TIER=ConsEnd /STK=0 /UG=Rn.40801 /UG_TITLE=ESTs AI704583 1396001_at BF404704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404704 /DB_XREF=gi:11392679 /DB_XREF=UI-R-CA1-bib-f-06-0-UI.s1 /CLONE=UI-R-CA1-bib-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.53527.1 /TIER=ConsEnd /STK=0 /UG=Rn.53527 /UG_TITLE=ESTs BF404704 1396002_at BF403333 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403333 /DB_XREF=gi:11391308 /DB_XREF=UI-R-CA1-biy-g-10-0-UI.s1 /CLONE=UI-R-CA1-biy-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.53540.1 /TIER=ConsEnd /STK=0 /UG=Rn.53540 /UG_TITLE=ESTs BF403333 1396003_at BF398824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398824 /DB_XREF=gi:11383825 /DB_XREF=UI-R-CA1-biz-i-13-0-UI.s1 /CLONE=UI-R-CA1-biz-i-13-0-UI /FEA=EST /CNT=3 /TID=Rn.59171.1 /TIER=ConsEnd /STK=0 /UG=Rn.59171 /UG_TITLE=ESTs BF398824 1396004_at BF399291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399291 /DB_XREF=gi:11384295 /DB_XREF=UI-R-CA1-biz-n-05-0-UI.s1 /CLONE=UI-R-CA1-biz-n-05-0-UI /FEA=EST /CNT=3 /TID=Rn.59331.1 /TIER=ConsEnd /STK=0 /UG=Rn.59331 /UG_TITLE=ESTs BF399291 1396005_at BF409455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409455 /DB_XREF=gi:11397430 /DB_XREF=UI-R-CA1-blj-c-09-0-UI.s1 /CLONE=UI-R-CA1-blj-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.61362.1 /TIER=ConsEnd /STK=0 /UG=Rn.61362 /UG_TITLE=ESTs BF409455 1396006_at BF409400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409400 /DB_XREF=gi:11397416 /DB_XREF=UI-R-CA1-blj-b-04-0-UI.s1 /CLONE=UI-R-CA1-blj-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.61411.1 /TIER=ConsEnd /STK=0 /UG=Rn.61411 /UG_TITLE=ESTs BF409400 1396007_at BF414415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414415 /DB_XREF=gi:11402399 /DB_XREF=UI-R-CA0-bpa-b-01-0-UI.s1 /CLONE=UI-R-CA0-bpa-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.62553.1 /TIER=ConsEnd /STK=0 /UG=Rn.62553 /UG_TITLE=ESTs BF414415 1396008_at BF411771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411771 /DB_XREF=gi:11399760 /DB_XREF=UI-R-BT1-bmq-h-08-0-UI.s1 /CLONE=UI-R-BT1-bmq-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.46035.1 /TIER=ConsEnd /STK=0 /UG=Rn.46035 /UG_TITLE=ESTs BF411771 1396009_at BE108258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108258 /DB_XREF=gi:8500363 /DB_XREF=UI-R-BS1-ayx-b-11-0-UI.s1 /CLONE=UI-R-BS1-ayx-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.51442.1 /TIER=ConsEnd /STK=0 /UG=Rn.51442 /UG_TITLE=ESTs BE108258 1396010_at BF411744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411744 /DB_XREF=gi:11399733 /DB_XREF=UI-R-BT1-bmq-e-03-0-UI.s1 /CLONE=UI-R-BT1-bmq-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.52329.1 /TIER=ConsEnd /STK=0 /UG=Rn.52329 /UG_TITLE=ESTs BF411744 1396011_at BF392919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392919 /DB_XREF=gi:11377778 /DB_XREF=UI-R-CA0-bfq-g-05-0-UI.s1 /CLONE=UI-R-CA0-bfq-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.57942.1 /TIER=ConsEnd /STK=0 /UG=Rn.57942 /UG_TITLE=ESTs BF392919 1396012_at BF395845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395845 /DB_XREF=gi:11380816 /DB_XREF=UI-R-BT1-bkc-h-09-0-UI.s1 /CLONE=UI-R-BT1-bkc-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.58468.1 /TIER=ConsEnd /STK=0 /UG=Rn.58468 /UG_TITLE=ESTs BF395845 1396013_at BI293141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293141 /DB_XREF=gi:14954355 /DB_XREF=UI-R-DK0-cdk-b-08-0-UI.s1 /CLONE=UI-R-DK0-cdk-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.59880.1 /TIER=ConsEnd /STK=0 /UG=Rn.59880 /UG_TITLE=ESTs BI293141 leucine zipper-EF-hand containing transmembrane protein 1 Letm1 305457 NM_001005884 0042407 // cristae formation // inferred from electronic annotation /// 0042407 // cristae formation // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396014_at BM384523 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384523 /DB_XREF=gi:18184576 /DB_XREF=UI-R-CN1-cjs-f-07-0-UI.s2 /CLONE=UI-R-CN1-cjs-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.60337.1 /TIER=ConsEnd /STK=0 /UG=Rn.60337 /UG_TITLE=ESTs BM384523 translocase of inner mitochondrial membrane 8 homolog a2 (yeast) Timm8a2 680794 NM_001109429 0006626 // protein targeting to mitochondrion // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0045039 // protein import into mitochondrial inner membrane // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0042719 // mitochondrial intermembrane space protein transporter complex // inferred from electronic annotation 0046872 // metal ion binding // inferred from electronic annotation 1396015_at BF410640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410640 /DB_XREF=gi:11398573 /DB_XREF=UI-R-CA0-bma-f-04-0-UI.s1 /CLONE=UI-R-CA0-bma-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.61755.1 /TIER=ConsEnd /STK=0 /UG=Rn.61755 /UG_TITLE=ESTs BF410640 1396016_at BF415547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415547 /DB_XREF=gi:11403536 /DB_XREF=UI-R-CA1-bka-d-10-0-UI.s1 /CLONE=UI-R-CA1-bka-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.62737.1 /TIER=ConsEnd /STK=0 /UG=Rn.62737 /UG_TITLE=ESTs BF415547 1396017_at BF415778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415778 /DB_XREF=gi:11403767 /DB_XREF=UI-R-CA0-bke-g-04-0-UI.s1 /CLONE=UI-R-CA0-bke-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.62813.1 /TIER=ConsEnd /STK=0 /UG=Rn.62813 /UG_TITLE=ESTs BF415778 1396018_at BF416830 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416830 /DB_XREF=gi:11404819 /DB_XREF=UI-R-CA0-bkv-e-08-0-UI.s1 /CLONE=UI-R-CA0-bkv-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.63157.1 /TIER=ConsEnd /STK=0 /UG=Rn.63157 /UG_TITLE=ESTs BF416830 1396019_at BF419464 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419464 /DB_XREF=gi:11407453 /DB_XREF=UI-R-CA0-bns-a-10-0-UI.s1 /CLONE=UI-R-CA0-bns-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.63530.1 /TIER=ConsEnd /STK=0 /UG=Rn.63530 /UG_TITLE=ESTs BF419464 1396020_at BE097972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097972 /DB_XREF=gi:8488951 /DB_XREF=UI-R-C4-amc-h-03-0-UI.s1 /CLONE=UI-R-C4-amc-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.34504.1 /TIER=ConsEnd /STK=0 /UG=Rn.34504 /UG_TITLE=ESTs, Weakly similar to T08435 la costa protein - fruit fly (D.melanogaster) BE097972 tousled-like kinase 2 Tlk2 303592 NM_001191652 /// XM_001067052 /// XM_001081561 /// XM_002724571 /// XM_221023 0001672 // regulation of chromatin assembly or disassembly // inferred from electronic annotation /// 0001672 // regulation of chromatin assembly or disassembly // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded 1396021_at AA999128 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA999128 /DB_XREF=gi:4278601 /DB_XREF=UI-R-E1-fy-d-10-0-UI.s2 /CLONE=UI-R-E1-fy-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.37592.1 /TIER=ConsEnd /STK=0 /UG=Rn.37592 /UG_TITLE=ESTs AA999128 Zinc finger protein 68 Zfp68 304337 NM_001107128 /// NM_001142945 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1396022_at AW534662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534662 /DB_XREF=gi:7177076 /DB_XREF=UI-R-BS0-ant-d-01-0-UI.s1 /CLONE=UI-R-BS0-ant-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.40594.1 /TIER=ConsEnd /STK=0 /UG=Rn.40594 /UG_TITLE=ESTs AW534662 Zinc finger protein 322a Zfp322a 680201 NM_001135084 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1396023_at AW522736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522736 /DB_XREF=gi:7165086 /DB_XREF=UI-R-BO0-ahl-g-09-0-UI.s1 /CLONE=UI-R-BO0-ahl-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.45459.1 /TIER=ConsEnd /STK=0 /UG=Rn.45459 /UG_TITLE=ESTs AW522736 1396024_at AW916358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916358 /DB_XREF=gi:8082069 /DB_XREF=EST347649 /CLONE=RGIDN65 /FEA=EST /CNT=3 /TID=Rn.49243.1 /TIER=ConsEnd /STK=0 /UG=Rn.49243 /UG_TITLE=ESTs, Highly similar to serine palmitoyltransferase, long chain base subunit 1 (Mus musculus) (M.musculus) AW916358 serine palmitoyltransferase, long chain base subunit 1 Sptlc1 361213 NM_001108406 0006686 // sphingomyelin biosynthetic process // not recorded /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0046511 // sphinganine biosynthetic process // not recorded /// 0046512 // sphingosine biosynthetic process // not recorded /// 0046513 // ceramide biosynthetic process // not recorded 0017059 // serine C-palmitoyltransferase complex // not recorded /// 0035339 // SPOTS complex // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004758 // serine C-palmitoyltransferase activity // not recorded /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1396025_at BF388243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388243 /DB_XREF=gi:11373067 /DB_XREF=UI-R-CA1-bca-h-12-0-UI.s1 /CLONE=UI-R-CA1-bca-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.49317.1 /TIER=ConsEnd /STK=0 /UG=Rn.49317 /UG_TITLE=ESTs BF388243 G protein-coupled receptor 61 Gpr61 310780 NM_001107715 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1396026_at BE108856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108856 /DB_XREF=gi:8500961 /DB_XREF=UI-R-BS1-ayz-b-11-0-UI.s1 /CLONE=UI-R-BS1-ayz-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.49731.1 /TIER=ConsEnd /STK=0 /UG=Rn.49731 /UG_TITLE=ESTs BE108856 1396027_at BE110554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110554 /DB_XREF=gi:8502659 /DB_XREF=UI-R-BJ1-avt-d-03-0-UI.s1 /CLONE=UI-R-BJ1-avt-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.51487.1 /TIER=ConsEnd /STK=0 /UG=Rn.51487 /UG_TITLE=ESTs BE110554 1396028_at BF392616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392616 /DB_XREF=gi:11377473 /DB_XREF=UI-R-CA0-bfl-c-05-0-UI.s1 /CLONE=UI-R-CA0-bfl-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.57714.1 /TIER=ConsEnd /STK=0 /UG=Rn.57714 /UG_TITLE=ESTs BF392616 1396029_at BE120584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120584 /DB_XREF=gi:8512689 /DB_XREF=UI-R-CA0-bav-c-03-0-UI.s1 /CLONE=UI-R-CA0-bav-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.58096.1 /TIER=ConsEnd /STK=0 /UG=Rn.58096 /UG_TITLE=ESTs BE120584 1396030_at BF402684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402684 /DB_XREF=gi:11390659 /DB_XREF=UI-R-CA0-bho-d-06-0-UI.s1 /CLONE=UI-R-CA0-bho-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.60104.1 /TIER=ConsEnd /STK=0 /UG=Rn.60104 /UG_TITLE=ESTs BF402684 1396031_at BF401497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401497 /DB_XREF=gi:11389472 /DB_XREF=UI-R-CA0-bgl-c-07-0-UI.s1 /CLONE=UI-R-CA0-bgl-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.60604.1 /TIER=ConsEnd /STK=0 /UG=Rn.60604 /UG_TITLE=ESTs BF401497 1396032_at BF409507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409507 /DB_XREF=gi:11397482 /DB_XREF=UI-R-CA1-bll-a-03-0-UI.s1 /CLONE=UI-R-CA1-bll-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.61380.1 /TIER=ConsEnd /STK=0 /UG=Rn.61380 /UG_TITLE=ESTs BF409507 1396033_at BF410185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410185 /DB_XREF=gi:11398160 /DB_XREF=UI-R-CA1-bju-e-02-0-UI.s1 /CLONE=UI-R-CA1-bju-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.61610.1 /TIER=ConsEnd /STK=0 /UG=Rn.61610 /UG_TITLE=ESTs BF410185 1396034_at BF402373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402373 /DB_XREF=gi:11390348 /DB_XREF=UI-R-CA0-bhn-e-02-0-UI.s1 /CLONE=UI-R-CA0-bhn-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.61848.1 /TIER=ConsEnd /STK=0 /UG=Rn.61848 /UG_TITLE=ESTs BF402373 carboxylesterase 7 Ces7 307660 NM_001012056 0005576 // extracellular region // inferred from electronic annotation 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1396035_at BF407272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407272 /DB_XREF=gi:11395247 /DB_XREF=UI-R-BJ2-bqc-f-12-0-UI.s1 /CLONE=UI-R-BJ2-bqc-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.76111.1 /TIER=ConsEnd /STK=0 /UG=Rn.76111 /UG_TITLE=ESTs BF407272 RPE-spondin Rpesp 297757 XM_001063197 /// XM_216317 0006955 // immune response // inferred from electronic annotation 0031012 // extracellular matrix // not recorded 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0030247 // polysaccharide binding // inferred from electronic annotation 1396036_at BF525299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF525299 /DB_XREF=gi:11633266 /DB_XREF=UI-R-G0-uq-a-10-0-UI.r1 /CLONE=UI-R-G0-uq-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.53963.1 /TIER=ConsEnd /STK=0 /UG=Rn.53963 /UG_TITLE=ESTs BF525299 Ral GEF with PH domain and SH3 binding motif 2 Ralgps2 304887 NM_001100680 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396037_at BF544069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF544069 /DB_XREF=gi:11635176 /DB_XREF=UI-R-E0-cq-a-05-0-UI.r1 /CLONE=UI-R-E0-cq-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.34296.1 /TIER=ConsEnd /STK=0 /UG=Rn.34296 /UG_TITLE=ESTs BF544069 1396038_at AI763817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763817 /DB_XREF=gi:5209752 /DB_XREF=UI-R-Y0-acs-d-04-0-UI.s1 /CLONE=UI-R-Y0-acs-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.42054.1 /TIER=ConsEnd /STK=0 /UG=Rn.42054 /UG_TITLE=ESTs AI763817 retbindin Rtbdn 304667 NM_001107165 1396039_at BG377396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377396 /DB_XREF=gi:13301868 /DB_XREF=UI-R-CU0-buy-a-02-0-UI.s1 /CLONE=UI-R-CU0-buy-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.44099.1 /TIER=ConsEnd /STK=0 /UG=Rn.44099 /UG_TITLE=ESTs BG377396 solute carrier family 22 (organic anion/urate transporter), member 12 Slc22a12 365398 NM_001034943 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015747 // urate transport // not recorded /// 0015747 // urate transport // inferred from sequence or structural similarity /// 0015747 // urate transport // inferred from electronic annotation /// 0042493 // response to drug // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0042493 // response to drug // inferred from sequence or structural similarity /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0055085 // transmembrane transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from sequence or structural similarity /// 0031526 // brush border membrane // inferred from electronic annotation /// 0031526 // brush border membrane // not recorded /// 0031526 // brush border membrane // inferred from sequence or structural similarity 0005215 // transporter activity // inferred from electronic annotation /// 0015143 // urate transmembrane transporter activity // inferred from electronic annotation /// 0015143 // urate transmembrane transporter activity // not recorded /// 0015143 // urate transmembrane transporter activity // inferred from sequence or structural similarity /// 0030165 // PDZ domain binding // inferred from electronic annotation /// 0030165 // PDZ domain binding // not recorded /// 0030165 // PDZ domain binding // inferred from sequence or structural similarity 1396040_at BE108568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108568 /DB_XREF=gi:8500673 /DB_XREF=UI-R-CA0-axf-g-07-0-UI.s1 /CLONE=UI-R-CA0-axf-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.47266.1 /TIER=ConsEnd /STK=0 /UG=Rn.47266 /UG_TITLE=ESTs BE108568 SH3 and multiple ankyrin repeat domains 1 Shank1 78957 NM_031751 0007016 // cytoskeletal anchoring at plasma membrane // non-traceable author statement 0005622 // intracellular // non-traceable author statement /// 0005624 // membrane fraction // inferred from direct assay /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // non-traceable author statement /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from direct assay /// 0045211 // postsynaptic membrane // not recorded /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0030159 // receptor signaling complex scaffold activity // inferred from direct assay /// 0031877 // somatostatin receptor binding // inferred from physical interaction /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction 1396041_at AW252694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252694 /DB_XREF=gi:6596285 /DB_XREF=UI-R-BJ0-aeb-e-03-0-UI.s1 /CLONE=UI-R-BJ0-aeb-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.41136.1 /TIER=ConsEnd /STK=0 /UG=Rn.41136 /UG_TITLE=ESTs AW252694 1396042_at BF288404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288404 /DB_XREF=gi:11219474 /DB_XREF=EST452995 /CLONE=RGIGT42 /FEA=EST /CNT=3 /TID=Rn.55579.1 /TIER=ConsEnd /STK=0 /UG=Rn.55579 /UG_TITLE=ESTs BF288404 1396043_at AW920327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920327 /DB_XREF=gi:8086136 /DB_XREF=EST351631 /CLONE=RGIGU12 /FEA=EST /CNT=3 /TID=Rn.55600.1 /TIER=ConsEnd /STK=0 /UG=Rn.55600 /UG_TITLE=ESTs AW920327 1396044_at AI706203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI706203 /DB_XREF=gi:4994103 /DB_XREF=UI-R-AB1-za-b-12-0-UI.s1 /CLONE=UI-R-AB1-za-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.41244.1 /TIER=ConsEnd /STK=0 /UG=Rn.41244 /UG_TITLE=ESTs AI706203 1396045_at BI299536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299536 /DB_XREF=gi:14975811 /DB_XREF=UI-R-CV2-cgu-c-08-0-UI.s1 /CLONE=UI-R-CV2-cgu-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.66180.1 /TIER=ConsEnd /STK=0 /UG=Rn.66180 /UG_TITLE=ESTs BI299536 1396046_at BF559983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559983 /DB_XREF=gi:11669713 /DB_XREF=UI-R-C0-hb-f-02-0-UI.r1 /CLONE=UI-R-C0-hb-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.64063.1 /TIER=ConsEnd /STK=0 /UG=Rn.64063 /UG_TITLE=ESTs, Weakly similar to SM6B RAT SEMAPHORIN 6B PRECURSOR (R.norvegicus) BF559983 0007275 // multicellular organismal development // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1396047_at AW920332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920332 /DB_XREF=gi:8086141 /DB_XREF=EST351636 /CLONE=RGIGU17 /FEA=EST /CNT=3 /TID=Rn.55602.1 /TIER=ConsEnd /STK=0 /UG=Rn.55602 /UG_TITLE=ESTs AW920332 arginine-glutamic acid dipeptide (RE) repeats Rere 116665 NM_053885 0006338 // chromatin remodeling // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0000118 // histone deacetylase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1396048_at AA850808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850808 /DB_XREF=gi:4131888 /DB_XREF=EST193576 /CLONE=ROVAL04 /FEA=EST /CNT=3 /TID=Rn.64271.1 /TIER=ConsEnd /STK=0 /UG=Rn.64271 /UG_TITLE=ESTs AA850808 cache domain containing 1 Cachd1 298267 NM_001191758 /// XM_001056642 /// XM_233227 0016020 // membrane // inferred from electronic annotation 1396049_x_at BG057530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG057530 /DB_XREF=gi:12523112 /DB_XREF=nag14a03.x1 /CLONE=IMAGE:4175909 /FEA=EST /CNT=3 /TID=Rn.65584.1 /TIER=ConsEnd /STK=0 /UG=Rn.65584 /UG_TITLE=ESTs, Moderately similar to RL3 RAT 60S RIBOSOMAL PROTEIN L3 (R.norvegicus) BG057530 ribosomal protein L3 Rpl3 300079 NM_198753 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396050_at BI298666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298666 /DB_XREF=gi:14974951 /DB_XREF=UI-R-CV2-chm-d-08-0-UI.s1 /CLONE=UI-R-CV2-chm-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.67036.1 /TIER=ConsEnd /STK=0 /UG=Rn.67036 /UG_TITLE=ESTs BI298666 1396051_at AI501321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501321 /DB_XREF=gi:4399172 /DB_XREF=UI-R-C2p-ru-a-09-0-UI.s1 /CLONE=UI-R-C2p-ru-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.27305.1 /TIER=ConsEnd /STK=0 /UG=Rn.27305 /UG_TITLE=ESTs AI501321 1396052_at BF554501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554501 /DB_XREF=gi:11664231 /DB_XREF=UI-R-E1-gg-b-05-0-UI.r1 /CLONE=UI-R-E1-gg-b-05-0-UI /FEA=EST /CNT=4 /TID=Rn.72696.1 /TIER=ConsEnd /STK=0 /UG=Rn.72696 /UG_TITLE=ESTs, Weakly similar to DD15 MOUSE PUTATIVE PRE-MRNA SPLICING FACTOR RNA HELICASE (M.musculus) BF554501 DEAH (Asp-Glu-Ala-His) box polypeptide 8 Dhx8 287727 NM_001047844 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1396053_at BF555968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555968 /DB_XREF=gi:11665698 /DB_XREF=UI-R-A1-dx-h-03-0-UI.r1 /CLONE=UI-R-A1-dx-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.46220.1 /TIER=ConsEnd /STK=0 /UG=Rn.46220 /UG_TITLE=ESTs BF555968 neural precursor cell expressed, developmentally down-regulated 9 Nedd9 291044 NM_001011922 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396054_at BF399535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399535 /DB_XREF=gi:11384543 /DB_XREF=UI-R-CA1-bjb-l-04-0-UI.s1 /CLONE=UI-R-CA1-bjb-l-04-0-UI /FEA=EST /CNT=3 /TID=Rn.63771.1 /TIER=ConsEnd /STK=0 /UG=Rn.63771 /UG_TITLE=ESTs BF399535 1396055_at AW530165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530165 /DB_XREF=gi:7172579 /DB_XREF=UI-R-C4-ale-d-04-0-UI.s1 /CLONE=UI-R-C4-ale-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.65891.1 /TIER=ConsEnd /STK=0 /UG=Rn.65891 /UG_TITLE=ESTs, Moderately similar to The 1.2 Angstrom Structure Of Kunitz Type Domain C5 {SUB 3107-3164 (H.sapiens) AW530165 procollagen, type VI, alpha 3 Col6a3 367313 NM_001109008 0009749 // response to glucose stimulus // inferred from expression pattern 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation 1396056_at AW527531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527531 /DB_XREF=gi:7169945 /DB_XREF=UI-R-BO1-ajv-d-02-0-UI.s1 /CLONE=UI-R-BO1-ajv-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.64189.1 /TIER=ConsEnd /STK=0 /UG=Rn.64189 /UG_TITLE=ESTs, Weakly similar to T13853 hypothetical protein X - fruit fly (D.melanogaster) AW527531 1396057_at AW521804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521804 /DB_XREF=gi:7164189 /DB_XREF=UI-R-BO0-agr-h-10-0-UI.s1 /CLONE=UI-R-BO0-agr-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.45266.1 /TIER=ConsEnd /STK=0 /UG=Rn.45266 /UG_TITLE=ESTs AW521804 1396058_at BG669136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669136 /DB_XREF=gi:13891043 /DB_XREF=DRN05G10 /CLONE=DRN05G10 /FEA=EST /CNT=3 /TID=Rn.28439.1 /TIER=ConsEnd /STK=0 /UG=Rn.28439 /UG_TITLE=ESTs BG669136 1396059_at BF289251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289251 /DB_XREF=gi:11220321 /DB_XREF=EST453842 /CLONE=RGIHC71 /FEA=EST /CNT=3 /TID=Rn.55744.1 /TIER=ConsEnd /STK=0 /UG=Rn.55744 /UG_TITLE=ESTs, Weakly similar to Y33K_HUMAN HYPOTHETICAL 33.4 KDA PROTEI (H.sapiens) BF289251 UBX domain protein 4 Ubxn4 304766 NM_001012025 0006986 // response to unfolded protein // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396060_at AI500735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI500735 /DB_XREF=gi:4398586 /DB_XREF=UI-R-C2p-rn-b-02-0-UI.s1 /CLONE=UI-R-C2p-rn-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.65473.1 /TIER=ConsEnd /STK=0 /UG=Rn.65473 /UG_TITLE=ESTs AI500735 Cellular repressor of E1A-stimulated genes 2 Creg2 316353 0005783 // endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // not recorded 0010181 // FMN binding // inferred from electronic annotation 1396061_at AI511079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511079 /DB_XREF=gi:4416778 /DB_XREF=UI-R-C2p-of-g-02-0-UI.s1 /CLONE=UI-R-C2p-of-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.34621.1 /TIER=ConsEnd /STK=0 /UG=Rn.34621 /UG_TITLE=ESTs AI511079 1396062_at BF290729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290729 /DB_XREF=gi:11221799 /DB_XREF=EST455320 /CLONE=RGIIB78 /FEA=EST /CNT=3 /TID=Rn.55968.1 /TIER=ConsEnd /STK=0 /UG=Rn.55968 /UG_TITLE=ESTs BF290729 Pyruvate dehydrogenase phosphatase isoenzyme 2 Pdp2 246311 NM_145091 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0009758 // carbohydrate utilization // traceable author statement /// 0010510 // regulation of acetyl-CoA biosynthetic process from pyruvate // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from expression pattern /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation /// 0019910 // mitochondrial pyruvate dehydrogenase (lipoamide) phosphatase complex // traceable author statement 0000287 // magnesium ion binding // inferred by curator /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0004724 // magnesium-dependent protein serine/threonine phosphatase activity // inferred from direct assay /// 0004741 // [pyruvate dehydrogenase (lipoamide)] phosphatase activity // inferred from direct assay /// 0004741 // [pyruvate dehydrogenase (lipoamide)] phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1396063_at AI073244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI073244 /DB_XREF=gi:3399438 /DB_XREF=UI-R-Y0-lx-h-10-0-UI.s1 /CLONE=UI-R-Y0-lx-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.65452.1 /TIER=ConsEnd /STK=0 /UG=Rn.65452 /UG_TITLE=ESTs, Highly similar to DEK_HUMAN DEK PROTEI (H.sapiens) AI073244 DEK oncogene Dek 306817 NM_001004255 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0042393 // histone binding // inferred from electronic annotation /// 0042393 // histone binding // not recorded 1396064_at BF289458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289458 /DB_XREF=gi:11220528 /DB_XREF=EST454049 /CLONE=RGIHH58 /FEA=EST /CNT=3 /TID=Rn.65168.1 /TIER=ConsEnd /STK=0 /UG=Rn.65168 /UG_TITLE=ESTs BF289458 1396065_at AI548204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548204 /DB_XREF=gi:4465692 /DB_XREF=UI-R-C3-su-f-06-0-UI.s1 /CLONE=UI-R-C3-su-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.43420.1 /TIER=ConsEnd /STK=0 /UG=Rn.43420 /UG_TITLE=ESTs AI548204 1396066_at AI170423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170423 /DB_XREF=gi:3710463 /DB_XREF=EST216350 /CLONE=RLUCN13 /FEA=EST /CNT=3 /TID=Rn.60498.1 /TIER=ConsEnd /STK=0 /UG=Rn.60498 /UG_TITLE=ESTs, Moderately similar to LMA4_MOUSE Laminin alpha-4 chain precursor (M.musculus) AI170423 0030155 // regulation of cell adhesion // inferred from electronic annotation /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0045995 // regulation of embryonic development // inferred from electronic annotation 0005604 // basement membrane // inferred from electronic annotation /// 0005606 // laminin-1 complex // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation 1396067_at AI511395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511395 /DB_XREF=gi:4417094 /DB_XREF=UI-R-C3-sf-h-03-0-UI.s1 /CLONE=UI-R-C3-sf-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.29433.1 /TIER=ConsEnd /STK=0 /UG=Rn.29433 /UG_TITLE=ESTs AI511395 1396068_at AA899954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899954 /DB_XREF=gi:4232446 /DB_XREF=UI-R-E0-cr-d-09-0-UI.s2 /CLONE=UI-R-E0-cr-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.32421.1 /TIER=ConsEnd /STK=0 /UG=Rn.32421 /UG_TITLE=ESTs AA899954 Similar to D1Ertd622e protein RGD1562136 501195 NM_001109086 1396069_at AI236941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236941 /DB_XREF=gi:3830447 /DB_XREF=EST233503 /CLONE=ROVDM67 /FEA=EST /CNT=2 /TID=Rn.65992.1 /TIER=ConsEnd /STK=0 /UG=Rn.65992 /UG_TITLE=ESTs, Weakly similar to T42729 histocompatibility antigen H-YDb, male-specific - mouse (M.musculus) AI236941 ubiquitously transcribed tetratricopeptide repeat, X chromosome Utx 100310845 XM_002727525 /// XM_002727526 /// XM_002727527 /// XM_002727528 /// XM_002727529 /// XM_002730185 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005488 // binding // inferred from electronic annotation 1396070_at BI295775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295775 /DB_XREF=gi:14959570 /DB_XREF=UI-R-DK0-cfa-e-11-0-UI.s1 /CLONE=UI-R-DK0-cfa-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.43884.1 /TIER=ConsEnd /STK=0 /UG=Rn.43884 /UG_TITLE=ESTs BI295775 1396071_at AI502944 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502944 /DB_XREF=gi:4400795 /DB_XREF=UI-R-C1-ks-h-07-0-UI.s1 /CLONE=UI-R-C1-ks-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.34594.1 /TIER=ConsEnd /STK=0 /UG=Rn.34594 /UG_TITLE=ESTs AI502944 1396072_at BG662585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG662585 /DB_XREF=gi:13884507 /DB_XREF=DRAAJA12 /CLONE=DRAAJA12 /FEA=EST /CNT=2 /TID=Rn.32976.1 /TIER=ConsEnd /STK=0 /UG=Rn.32976 /UG_TITLE=ESTs BG662585 amyloid beta precursor protein (cytoplasmic tail) binding protein 2 Appbp2 303396 NM_001100969 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0046907 // intracellular transport // inferred from electronic annotation /// 0046907 // intracellular transport // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396073_at AW527466 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527466 /DB_XREF=gi:7169880 /DB_XREF=UI-R-BO1-ajt-f-07-0-UI.s1 /CLONE=UI-R-BO1-ajt-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.46540.1 /TIER=ConsEnd /STK=0 /UG=Rn.46540 /UG_TITLE=ESTs AW527466 1396074_at BF525157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF525157 /DB_XREF=gi:11633124 /DB_XREF=UI-R-AF0-ye-f-04-0-UI.r1 /CLONE=UI-R-AF0-ye-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.76151.1 /TIER=ConsEnd /STK=0 /UG=Rn.76151 /UG_TITLE=ESTs BF525157 1396075_at BF567479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567479 /DB_XREF=gi:11677209 /DB_XREF=UI-R-BO0-aia-f-08-0-UI.r1 /CLONE=UI-R-BO0-aia-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.76372.1 /TIER=ConsEnd /STK=0 /UG=Rn.76372 /UG_TITLE=ESTs BF567479 1396076_at AW914907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW914907 /DB_XREF=gi:8080588 /DB_XREF=EST346211 /CLONE=RGIBM18 /FEA=EST /CNT=2 /TID=Rn.63836.1 /TIER=ConsEnd /STK=0 /UG=Rn.63836 /UG_TITLE=ESTs AW914907 1396077_at BF554876 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554876 /DB_XREF=gi:11664564 /DB_XREF=UI-R-E0-ca-e-04-0-UI.r1 /CLONE=UI-R-E0-ca-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.64013.1 /TIER=ConsEnd /STK=0 /UG=Rn.64013 /UG_TITLE=ESTs BF554876 1396078_at BF389439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389439 /DB_XREF=gi:11374269 /DB_XREF=UI-R-BS2-bdj-g-12-0-UI.s1 /CLONE=UI-R-BS2-bdj-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.56948.1 /TIER=ConsEnd /STK=0 /UG=Rn.56948 /UG_TITLE=ESTs BF389439 KRIT1, ankyrin repeat containing Krit1 362317 NM_001108618 0005856 // cytoskeleton // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1396079_at BF558358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558358 /DB_XREF=gi:11668088 /DB_XREF=UI-R-E0-dm-f-02-0-UI.r1 /CLONE=UI-R-E0-dm-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.53508.1 /TIER=ConsEnd /STK=0 /UG=Rn.53508 /UG_TITLE=ESTs, Moderately similar to T17259 hypothetical protein DKFZp727C091.1 (H.sapiens) BF558358 similar to KIAA1267 protein RGD1311429 360642 XR_006336 /// XR_085563 1396080_at BF386701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386701 /DB_XREF=gi:11371525 /DB_XREF=UI-R-CA1-bbg-e-01-0-UI.s1 /CLONE=UI-R-CA1-bbg-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.69888.1 /TIER=ConsEnd /STK=0 /UG=Rn.69888 /UG_TITLE=ESTs, Weakly similar to T47141 hypothetical protein DKFZp761N1024.1 (H.sapiens) BF386701 similar to dJ202D23.2 (novel protein similar to C21ORF5 (KIAA0933)) RGD1305534 315864 XM_001062758 /// XM_236449 1396081_at BM387505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387505 /DB_XREF=gi:18187558 /DB_XREF=UI-R-CN1-cjl-a-04-0-UI.s1 /CLONE=UI-R-CN1-cjl-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.82012.1 /TIER=ConsEnd /STK=0 /UG=Rn.82012 /UG_TITLE=ESTs BM387505 spire homolog 1 (Drosophila) Spire1 307348 NM_001107381 0048193 // Golgi vesicle transport // not recorded 0005794 // Golgi apparatus // not recorded 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1396082_at BG668869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668869 /DB_XREF=gi:13890791 /DB_XREF=DRN02F02 /CLONE=DRN02F02 /FEA=EST /CNT=2 /TID=Rn.43131.1 /TIER=ConsEnd /STK=0 /UG=Rn.43131 /UG_TITLE=ESTs, Weakly similar to KRP1_RAT Kelch-related protein 1 (Kel-like protein 23) (Sarcosin) (R.norvegicus) BG668869 kelch repeat and BTB (POZ) domain containing 3 Kbtbd3 315394 NM_001108121 0005515 // protein binding // inferred from electronic annotation 1396083_at BM390018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390018 /DB_XREF=gi:18190071 /DB_XREF=UI-R-CN1-cjo-m-22-0-UI.s1 /CLONE=UI-R-CN1-cjo-m-22-0-UI /FEA=EST /CNT=2 /TID=Rn.43165.1 /TIER=ConsEnd /STK=0 /UG=Rn.43165 /UG_TITLE=ESTs BM390018 1396084_at R47116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:R47116 /DB_XREF=gi:807458 /DB_XREF=Y65 /CLONE=Y65 /FEA=EST /CNT=2 /TID=Rn.61275.1 /TIER=ConsEnd /STK=0 /UG=Rn.61275 /UG_TITLE=ESTs R47116 1396085_at AW918670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918670 /DB_XREF=gi:8084452 /DB_XREF=EST349974 /CLONE=RGIEW29 /FEA=EST /CNT=2 /TID=Rn.42536.1 /TIER=ConsEnd /STK=0 /UG=Rn.42536 /UG_TITLE=ESTs, Moderately similar to A37098 gelation factor ABP-280, long form (H.sapiens) AW918670 filamin C, gamma Flnc 362332 NM_001191862 /// XM_001061717 /// XM_001061768 /// XM_001061822 /// XM_002729295 /// XM_002729296 /// XM_342653 0048747 // muscle fiber development // not recorded 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396086_at H31931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31931 /DB_XREF=gi:977348 /DB_XREF=EST106502 /CLONE=RPCBD33 /FEA=EST /CNT=2 /TID=Rn.75426.1 /TIER=ConsEnd /STK=0 /UG=Rn.75426 /UG_TITLE=ESTs, Moderately similar to I65744 gene MAC30 protein (H.sapiens) H31931 transmembrane protein 97 Tmem97 303330 NM_001008334 0042632 // cholesterol homeostasis // not recorded /// 0042632 // cholesterol homeostasis // inferred from sequence or structural similarity /// 0042632 // cholesterol homeostasis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from sequence or structural similarity /// 0005764 // lysosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005791 // rough endoplasmic reticulum // not recorded /// 0005791 // rough endoplasmic reticulum // inferred from sequence or structural similarity /// 0005791 // rough endoplasmic reticulum // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded /// 0031965 // nuclear membrane // inferred from sequence or structural similarity /// 0031965 // nuclear membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396087_at BG669452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669452 /DB_XREF=gi:13891374 /DB_XREF=DRNAAFE09 /CLONE=DRNAAFE09 /FEA=EST /CNT=2 /TID=Rn.45793.1 /TIER=ConsEnd /STK=0 /UG=Rn.45793 /UG_TITLE=ESTs, Weakly similar to RIP2 MOUSE RHO-GUANINE NUCLEOTIDE EXCHANGE FACTOR (M.musculus) BG669452 Rho-guanine nucleotide exchange factor Rgnef 361882 NM_001108542 0021955 // central nervous system neuron axonogenesis // inferred from electronic annotation /// 0021955 // central nervous system neuron axonogenesis // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0060052 // neurofilament cytoskeleton organization // inferred from electronic annotation /// 0060052 // neurofilament cytoskeleton organization // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1396088_at AW914780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW914780 /DB_XREF=gi:8080459 /DB_XREF=EST346084 /CLONE=RGIBH24 /FEA=EST /CNT=2 /TID=Rn.66843.1 /TIER=ConsEnd /STK=0 /UG=Rn.66843 /UG_TITLE=ESTs AW914780 1396089_at BF398376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398376 /DB_XREF=gi:11383365 /DB_XREF=UI-R-BS2-beo-b-04-0-UI.s1 /CLONE=UI-R-BS2-beo-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.64142.1 /TIER=ConsEnd /STK=0 /UG=Rn.64142 /UG_TITLE=ESTs, Highly similar to TEF3 MOUSE TRANSCRIPTIONAL ENHANCER FACTOR TEF-3 (M.musculus) BF398376 similar to Transcriptional enhancer factor TEF-3 (TEA domain family member 4) (TEAD-4) (ETF-related factor 2) (ETFR-2) (TEF-1-related factor 1) (TEF-1-related factor FR-19) (RTEF-1) LOC683522 683522 XR_085820 /// XR_086240 1396090_at BF564059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564059 /DB_XREF=gi:11673747 /DB_XREF=UI-R-C4-aky-d-02-0-UI.r1 /CLONE=UI-R-C4-aky-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.72844.1 /TIER=ConsEnd /STK=0 /UG=Rn.72844 /UG_TITLE=ESTs BF564059 ring finger protein 150 Rnf150 364983 NM_001191093 /// XM_001067775 /// XM_001073394 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1396091_at BI296193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296193 /DB_XREF=gi:14960389 /DB_XREF=UI-R-DK0-cex-d-10-0-UI.s1 /CLONE=UI-R-DK0-cex-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.50970.1 /TIER=ConsEnd /STK=0 /UG=Rn.50970 /UG_TITLE=ESTs BI296193 similar to zinc finger protein 146 LOC687516 687516 XM_001078904 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1396092_at BG667897 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667897 /DB_XREF=gi:13889819 /DB_XREF=DRABQB04 /CLONE=DRABQB04 /FEA=EST /CNT=2 /TID=Rn.72100.1 /TIER=ConsEnd /STK=0 /UG=Rn.72100 /UG_TITLE=ESTs BG667897 NFKB inhibitor interacting Ras-like 1 Nkiras1 305751 NM_001107252 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1396093_at BF405335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405335 /DB_XREF=gi:11393310 /DB_XREF=UI-R-CA1-biw-o-23-0-UI.s1 /CLONE=UI-R-CA1-biw-o-23-0-UI /FEA=EST /CNT=2 /TID=Rn.64333.1 /TIER=ConsEnd /STK=0 /UG=Rn.64333 /UG_TITLE=ESTs BF405335 1396094_at BG668757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668757 /DB_XREF=gi:13890679 /DB_XREF=DRNCFC08 /CLONE=DRNCFC08 /FEA=EST /CNT=2 /TID=Rn.38881.1 /TIER=ConsEnd /STK=0 /UG=Rn.38881 /UG_TITLE=ESTs BG668757 1396095_at BG673600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG673600 /DB_XREF=gi:13895699 /DB_XREF=DRNAAD07 /CLONE=DRNAAD07 /FEA=EST /CNT=2 /TID=Rn.74176.1 /TIER=ConsEnd /STK=0 /UG=Rn.74176 /UG_TITLE=ESTs BG673600 1396096_at BF405016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405016 /DB_XREF=gi:11392991 /DB_XREF=UI-R-CA1-bio-e-05-0-UI.s1 /CLONE=UI-R-CA1-bio-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.60644.1 /TIER=ConsEnd /STK=0 /UG=Rn.60644 /UG_TITLE=ESTs BF405016 mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A Mgat4a 367252 NM_001012225 /// NM_001160155 0005975 // carbohydrate metabolic process // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008454 // alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1396097_at BG376872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376872 /DB_XREF=gi:13301344 /DB_XREF=UI-R-CA1-bli-c-07-0-UI.s1 /CLONE=UI-R-CA1-bli-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.51347.1 /TIER=ConsEnd /STK=0 /UG=Rn.51347 /UG_TITLE=ESTs BG376872 1396098_at BG380369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380369 /DB_XREF=gi:13304841 /DB_XREF=UI-R-CT0-btw-d-02-0-UI.s1 /CLONE=UI-R-CT0-btw-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.66741.1 /TIER=ConsEnd /STK=0 /UG=Rn.66741 /UG_TITLE=ESTs, Weakly similar to T00365 hypothetical protein KIAA0670 (H.sapiens) BG380369 apoptotic chromatin condensation inducer 1 Acin1 305884 NM_001170468 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // not recorded /// 0030263 // apoptotic chromosome condensation // inferred from electronic annotation /// 0030263 // apoptotic chromosome condensation // not recorded /// 0045657 // positive regulation of monocyte differentiation // inferred from electronic annotation /// 0045657 // positive regulation of monocyte differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396099_at AA801227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA801227 /DB_XREF=gi:4131587 /DB_XREF=EST190724 /CLONE=RPLAB34 /FEA=EST /CNT=2 /TID=Rn.59870.1 /TIER=ConsEnd /STK=0 /UG=Rn.59870 /UG_TITLE=ESTs AA801227 tetraspanin 33 Tspan33 500065 NM_001109227 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1396100_at BF563171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563171 /DB_XREF=gi:11672901 /DB_XREF=UI-R-BO1-ajf-h-06-0-UI.r1 /CLONE=UI-R-BO1-ajf-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.72794.1 /TIER=ConsEnd /STK=0 /UG=Rn.72794 /UG_TITLE=ESTs, Weakly similar to RBMA_RAT RNA-BINDING PROTEIN 10 (RNA BINDING MOTIF PROTEIN 10) (S1-1 PROTEIN) (R.norvegicus) BF563171 angiogenic factor with G patch and FHA domains 1 Aggf1 310005 XM_001060407 /// XM_226709 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043499 // eukaryotic cell surface binding // inferred from electronic annotation /// 0043499 // eukaryotic cell surface binding // not recorded 1396101_at BF552244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552244 /DB_XREF=gi:11661974 /DB_XREF=UI-R-C1-lo-a-12-0-UI.r1 /CLONE=UI-R-C1-lo-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.76209.1 /TIER=ConsEnd /STK=0 /UG=Rn.76209 /UG_TITLE=ESTs BF552244 stanniocalcin 1 Stc1 81801 NM_031123 0001503 // ossification // inferred from direct assay /// 0006874 // cellular calcium ion homeostasis // traceable author statement /// 0007566 // embryo implantation // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0033280 // response to vitamin D // inferred from expression pattern /// 0046697 // decidualization // inferred from expression pattern /// 0071320 // cellular response to cAMP // inferred from expression pattern /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay 0005179 // hormone activity // inferred from electronic annotation 1396102_at BF406574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406574 /DB_XREF=gi:11394549 /DB_XREF=UI-R-BJ2-bpu-f-10-0-UI.s1 /CLONE=UI-R-BJ2-bpu-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.60985.1 /TIER=ConsEnd /STK=0 /UG=Rn.60985 /UG_TITLE=ESTs BF406574 1396103_at BF556107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556107 /DB_XREF=gi:11665837 /DB_XREF=UI-R-A1-eg-b-03-0-UI.r1 /CLONE=UI-R-A1-eg-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.64439.1 /TIER=ConsEnd /STK=0 /UG=Rn.64439 /UG_TITLE=ESTs, Weakly similar to S51970 hypothetical protein YAL049c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BF556107 carboxymethylenebutenolidase homolog (Pseudomonas) Cmbl 310201 NM_001008770 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1396104_at BF405150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405150 /DB_XREF=gi:11393125 /DB_XREF=UI-R-CA1-biq-d-01-0-UI.s1 /CLONE=UI-R-CA1-biq-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.59743.1 /TIER=ConsEnd /STK=0 /UG=Rn.59743 /UG_TITLE=ESTs BF405150 1396105_at BG671576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671576 /DB_XREF=gi:13893675 /DB_XREF=DRNBUH07 /CLONE=DRNBUH07 /FEA=EST /CNT=2 /TID=Rn.51146.1 /TIER=ConsEnd /STK=0 /UG=Rn.51146 /UG_TITLE=ESTs BG671576 similar to mbt domain containing 1 LOC688133 688133 XM_001081166 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1396106_at BF565241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565241 /DB_XREF=gi:11674971 /DB_XREF=UI-R-BO1-ajj-b-10-0-UI.r1 /CLONE=UI-R-BO1-ajj-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.27697.1 /TIER=ConsEnd /STK=0 /UG=Rn.27697 /UG_TITLE=ESTs BF565241 1396107_at BF549155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549155 /DB_XREF=gi:11640262 /DB_XREF=UI-R-A0-aq-c-10-0-UI.r1 /CLONE=UI-R-A0-aq-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.32228.1 /TIER=ConsEnd /STK=0 /UG=Rn.32228 /UG_TITLE=ESTs, Highly similar to T12485 hypothetical protein DKFZp564O2082.1 (H.sapiens) BF549155 SYF2 homolog, RNA splicing factor (S. cerevisiae) Syf2 170933 NM_133417 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation 1396108_at BF389026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389026 /DB_XREF=gi:11373853 /DB_XREF=UI-R-BS2-bdk-h-11-0-UI.s1 /CLONE=UI-R-BS2-bdk-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.75395.1 /TIER=ConsEnd /STK=0 /UG=Rn.75395 /UG_TITLE=ESTs BF389026 1396109_at R47022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:R47022 /DB_XREF=gi:807364 /DB_XREF=Y344 /CLONE=Y344 /FEA=EST /CNT=2 /TID=Rn.41192.1 /TIER=ConsEnd /STK=0 /UG=Rn.41192 /UG_TITLE=ESTs R47022 anthrax toxin receptor 1 Antxr1 362393 NM_001044249 0031532 // actin cytoskeleton reorganization // inferred from electronic annotation /// 0031532 // actin cytoskeleton reorganization // not recorded /// 0034446 // substrate adhesion-dependent cell spreading // inferred from electronic annotation /// 0034446 // substrate adhesion-dependent cell spreading // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031258 // lamellipodium membrane // inferred from electronic annotation /// 0031258 // lamellipodium membrane // not recorded /// 0031527 // filopodium membrane // inferred from electronic annotation /// 0031527 // filopodium membrane // not recorded /// 0042995 // cell projection // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005518 // collagen binding // inferred from electronic annotation /// 0005518 // collagen binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1396110_at BE107839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107839 /DB_XREF=gi:8499944 /DB_XREF=UI-R-CA0-awx-d-12-0-UI.s1 /CLONE=UI-R-CA0-awx-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.40543.1 /TIER=ConsEnd /STK=0 /UG=Rn.40543 /UG_TITLE=ESTs BE107839 1396111_at BE104964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104964 /DB_XREF=gi:8497065 /DB_XREF=UI-R-BX0-arw-g-05-0-UI.s1 /CLONE=UI-R-BX0-arw-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.50700.1 /TIER=ConsEnd /STK=0 /UG=Rn.50700 /UG_TITLE=ESTs BE104964 1396112_at BF408519 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408519 /DB_XREF=gi:11396494 /DB_XREF=UI-R-BJ2-bre-g-02-0-UI.s1 /CLONE=UI-R-BJ2-bre-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.75867.1 /TIER=ConsEnd /STK=0 /UG=Rn.75867 /UG_TITLE=ESTs BF408519 myotubularin related protein 10 Mtmr10 309255 NM_001100846 /// XM_001058490 /// XM_219705 0016311 // dephosphorylation // inferred from electronic annotation 0016791 // phosphatase activity // inferred from electronic annotation 1396113_at AI716909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716909 /DB_XREF=gi:5034165 /DB_XREF=UI-R-Y0-aci-f-05-0-UI.s1 /CLONE=UI-R-Y0-aci-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.41351.1 /TIER=ConsEnd /STK=0 /UG=Rn.41351 /UG_TITLE=ESTs, Moderately similar to T08702 hypothetical protein DKFZp564O243.1 (H.sapiens) AI716909 abhydrolase domain containing 14A Abhd14a 300982 NM_001009670 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation 1396114_at BF416488 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416488 /DB_XREF=gi:11404477 /DB_XREF=UI-R-CA0-bkk-b-11-0-UI.s1 /CLONE=UI-R-CA0-bkk-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.76327.1 /TIER=ConsEnd /STK=0 /UG=Rn.76327 /UG_TITLE=ESTs BF416488 1396115_at BF566051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF566051 /DB_XREF=gi:11675781 /DB_XREF=UI-R-BT1-ajx-f-09-0-UI.r1 /CLONE=UI-R-BT1-ajx-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.76345.1 /TIER=ConsEnd /STK=0 /UG=Rn.76345 /UG_TITLE=ESTs BF566051 1396116_at BG669152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG669152 /DB_XREF=gi:13891059 /DB_XREF=DRN06A07 /CLONE=DRN06A07 /FEA=EST /CNT=2 /TID=Rn.71834.1 /TIER=ConsEnd /STK=0 /UG=Rn.71834 /UG_TITLE=ESTs, Weakly similar to S52522 hypothetical protein YPL009c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BG669152 serologically defined colon cancer antigen 1 Sdccag1 100322884 NM_001170586 /// XM_002726704 /// XM_002729650 1396117_at BG665533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665533 /DB_XREF=gi:13887455 /DB_XREF=DRACEC08 /CLONE=DRACEC08 /FEA=EST /CNT=2 /TID=Rn.67993.1 /TIER=ConsEnd /STK=0 /UG=Rn.67993 /UG_TITLE=ESTs BG665533 1396118_at AI410171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410171 /DB_XREF=gi:4253675 /DB_XREF=EST238464 /CLONE=RKIEB35 /FEA=EST /CNT=2 /TID=Rn.54880.1 /TIER=ConsEnd /STK=0 /UG=Rn.54880 /UG_TITLE=ESTs, Weakly similar to C05G5.5.p (Caenorhabditis elegans) (C.elegans) AI410171 similar to C05G5.5 LOC689914 689914 XM_001072500 1396119_at AW534209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534209 /DB_XREF=gi:7176623 /DB_XREF=UI-R-C4-alq-e-09-0-UI.s1 /CLONE=UI-R-C4-alq-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.48291.1 /TIER=ConsEnd /STK=0 /UG=Rn.48291 /UG_TITLE=ESTs AW534209 1396120_at BF554238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554238 /DB_XREF=gi:11663968 /DB_XREF=UI-R-C0-hp-d-01-0-UI.r1 /CLONE=UI-R-C0-hp-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.40292.2 /TIER=ConsEnd /STK=0 /UG=Rn.40292 /UG_TITLE=ESTs BF554238 1396121_at AW527234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527234 /DB_XREF=gi:7169648 /DB_XREF=UI-R-BO1-ajs-a-06-0-UI.s1 /CLONE=UI-R-BO1-ajs-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.46464.1 /TIER=ConsEnd /STK=0 /UG=Rn.46464 /UG_TITLE=ESTs AW527234 1396122_at BE097234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097234 /DB_XREF=gi:8488165 /DB_XREF=UI-R-BO1-apu-h-05-0-UI.s1 /CLONE=UI-R-BO1-apu-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.49569.1 /TIER=ConsEnd /STK=0 /UG=Rn.49569 /UG_TITLE=ESTs BE097234 1396123_at BG377335 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377335 /DB_XREF=gi:13301807 /DB_XREF=UI-R-CU0-bvc-c-06-0-UI.s1 /CLONE=UI-R-CU0-bvc-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.57336.1 /TIER=ConsEnd /STK=0 /UG=Rn.57336 /UG_TITLE=ESTs, Weakly similar to I49278 t complex testis-specific protein - mouse (M.musculus) BG377335 Tctex1 domain containing 2 Tctex1d2 498095 NM_001109054 0005515 // protein binding // not recorded 1396124_at AW916396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916396 /DB_XREF=gi:8082108 /DB_XREF=EST347687 /CLONE=RGIDO13 /FEA=EST /CNT=2 /TID=Rn.54151.1 /TIER=ConsEnd /STK=0 /UG=Rn.54151 /UG_TITLE=ESTs AW916396 Similar to novel protein similar to Tensin Tns RGD1564174 360980 XM_002725003 /// XM_341256 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0016477 // cell migration // inferred from electronic annotation /// 0048286 // lung alveolus development // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1396125_at BG672693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672693 /DB_XREF=gi:13894792 /DB_XREF=DRNCOC05 /CLONE=DRNCOC05 /FEA=EST /CNT=2 /TID=Rn.74053.1 /TIER=ConsEnd /STK=0 /UG=Rn.74053 /UG_TITLE=ESTs BG672693 1396126_at BF556812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556812 /DB_XREF=gi:11666542 /DB_XREF=UI-R-E1-fg-c-05-0-UI.r1 /CLONE=UI-R-E1-fg-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.79313.1 /TIER=ConsEnd /STK=0 /UG=Rn.79313 /UG_TITLE=ESTs BF556812 1396127_at BF288545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288545 /DB_XREF=gi:11219615 /DB_XREF=EST453136 /CLONE=RGIGU82 /FEA=EST /CNT=2 /TID=Rn.55616.1 /TIER=ConsEnd /STK=0 /UG=Rn.55616 /UG_TITLE=ESTs BF288545 1396128_at BG670404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670404 /DB_XREF=gi:13892503 /DB_XREF=DRNBAG07 /CLONE=DRNBAG07 /FEA=EST /CNT=2 /TID=Rn.79703.1 /TIER=ConsEnd /STK=0 /UG=Rn.79703 /UG_TITLE=ESTs, Moderately similar to T47146 hypothetical protein DKFZp761C169.1 (H.sapiens) BG670404 GC-rich promoter binding protein 1 Gpbp1 294734 NM_001106410 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005634 // nucleus // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded 1396129_at AI412979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412979 /DB_XREF=gi:4256483 /DB_XREF=EST241279 /CLONE=RBREC44 /FEA=EST /CNT=2 /TID=Rn.64780.1 /TIER=ConsEnd /STK=0 /UG=Rn.64780 /UG_TITLE=ESTs, Moderately similar to SZ14 MOUSE SMALL INDUCIBLE CYTOKINE B14 PRECURSOR (M.musculus) AI412979 chemokine (C-X-C motif) ligand 14 Cxcl14 306748 NM_001013137 0006955 // immune response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annotation 1396130_at AW915869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915869 /DB_XREF=gi:8081579 /DB_XREF=EST347173 /CLONE=RGIDB75 /FEA=EST /CNT=2 /TID=Rn.69797.1 /TIER=ConsEnd /STK=0 /UG=Rn.69797 /UG_TITLE=ESTs AW915869 SCY1-like 3 (S. cerevisiae) Scyl3 360866 NM_001191828 /// XM_001075015 /// XM_341142 0006468 // protein phosphorylation // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0030027 // lamellipodium // not recorded 0004672 // protein kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded 1396131_at BF289712 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289712 /DB_XREF=gi:11220782 /DB_XREF=EST454303 /CLONE=RGIHK19 /FEA=EST /CNT=2 /TID=Rn.43408.1 /TIER=ConsEnd /STK=0 /UG=Rn.43408 /UG_TITLE=ESTs BF289712 Family with sequence similarity 134, member C Fam134c 360632 NM_001135804 1396132_at AI408164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408164 /DB_XREF=gi:4251668 /DB_XREF=EST236454 /CLONE=ROVEI48 /FEA=EST /CNT=2 /TID=Rn.55855.1 /TIER=ConsEnd /STK=0 /UG=Rn.55855 /UG_TITLE=ESTs, Weakly similar to I56110 Fc-gamma RIIIB-alpha - rat (R.norvegicus) AI408164 Fc receptor-like A Fcrla 304965 NM_001100682 0030154 // cell differentiation // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1396133_at AA944325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944325 /DB_XREF=gi:3104241 /DB_XREF=EST199824 /CLONE=REMAF42 /FEA=EST /CNT=2 /TID=Rn.65149.1 /TIER=ConsEnd /STK=0 /UG=Rn.65149 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) AA944325 Integrin, beta 5 Itgb5 257645 NM_147139 0006936 // muscle contraction // not recorded 0005886 // plasma membrane // not recorded /// 0005925 // focal adhesion // not recorded /// 0031252 // cell leading edge // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // inferred from physical interaction 1396134_at BF418847 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418847 /DB_XREF=gi:11406836 /DB_XREF=UI-R-BJ2-bqj-f-05-0-UI.s1 /CLONE=UI-R-BJ2-bqj-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.64266.1 /TIER=ConsEnd /STK=0 /UG=Rn.64266 /UG_TITLE=ESTs BF418847 1396135_at BF567887 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567887 /DB_XREF=gi:11677617 /DB_XREF=UI-R-BO0-aho-e-06-0-UI.r1 /CLONE=UI-R-BO0-aho-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.73013.1 /TIER=ConsEnd /STK=0 /UG=Rn.73013 /UG_TITLE=ESTs BF567887 1396136_at BF386241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386241 /DB_XREF=gi:11371065 /DB_XREF=UI-R-CA1-bbc-c-06-0-UI.s1 /CLONE=UI-R-CA1-bbc-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.47856.1 /TIER=ConsEnd /STK=0 /UG=Rn.47856 /UG_TITLE=ESTs BF386241 1396137_at BF567873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567873 /DB_XREF=gi:11677603 /DB_XREF=UI-R-BO0-aho-c-01-0-UI.r1 /CLONE=UI-R-BO0-aho-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.80048.1 /TIER=ConsEnd /STK=0 /UG=Rn.80048 /UG_TITLE=ESTs BF567873 zer-1 homolog (C. elegans) Zer1 311842 NM_001100707 /// XM_001065175 /// XM_001077108 /// XM_001077126 /// XM_242300 0051438 // regulation of ubiquitin-protein ligase activity // inferred from electronic annotation /// 0051438 // regulation of ubiquitin-protein ligase activity // not recorded 0031462 // Cul2-RING ubiquitin ligase complex // inferred from electronic annotation /// 0031462 // Cul2-RING ubiquitin ligase complex // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396138_at BF544511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF544511 /DB_XREF=gi:11635576 /DB_XREF=UI-R-BT0-pw-h-08-0-UI.r1 /CLONE=UI-R-BT0-pw-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.63845.1 /TIER=ConsEnd /STK=0 /UG=Rn.63845 /UG_TITLE=ESTs BF544511 1396139_at BE120196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120196 /DB_XREF=gi:8512301 /DB_XREF=UI-R-CA0-bap-f-09-0-UI.s1 /CLONE=UI-R-CA0-bap-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.53480.1 /TIER=ConsEnd /STK=0 /UG=Rn.53480 /UG_TITLE=ESTs BE120196 1396140_at AA799431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799431 /DB_XREF=gi:2862386 /DB_XREF=EST188928 /CLONE=RHEAA93 /FEA=EST /CNT=2 /TID=Rn.79735.1 /TIER=ConsEnd /STK=0 /UG=Rn.79735 /UG_TITLE=ESTs, Weakly similar to densin-180 (Rattus norvegicus) (R.norvegicus) AA799431 leucine rich repeat containing 39 Lrrc39 691307 NM_001109637 0005515 // protein binding // inferred from electronic annotation 1396141_at BG672771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672771 /DB_XREF=gi:13894870 /DB_XREF=DRNCPE01 /CLONE=DRNCPE01 /FEA=EST /CNT=2 /TID=Rn.38706.1 /TIER=ConsEnd /STK=0 /UG=Rn.38706 /UG_TITLE=ESTs BG672771 1396142_at BI274476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274476 /DB_XREF=gi:14885424 /DB_XREF=UI-R-CW0-bwj-c-11-0-UI.s1 /CLONE=UI-R-CW0-bwj-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.79977.1 /TIER=ConsEnd /STK=0 /UG=Rn.79977 /UG_TITLE=ESTs, Weakly similar to YLS3_CAEEL Hypothetical 70.7 kDa protein F09G8.3 in chromosome III (C.elegans) BI274476 mitochondrial ribosomal protein S9 Mrps9 301371 NM_001100549 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1396143_at BI293013 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293013 /DB_XREF=gi:14954099 /DB_XREF=UI-R-DK0-cdj-b-03-0-UI.s1 /CLONE=UI-R-DK0-cdj-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.60419.1 /TIER=ConsEnd /STK=0 /UG=Rn.60419 /UG_TITLE=ESTs BI293013 1396144_at BF560978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF560978 /DB_XREF=gi:11670666 /DB_XREF=UI-R-E1-fo-b-06-0-UI.r1 /CLONE=UI-R-E1-fo-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.64079.1 /TIER=ConsEnd /STK=0 /UG=Rn.64079 /UG_TITLE=ESTs BF560978 1396145_at AW142500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142500 /DB_XREF=gi:6162399 /DB_XREF=EST292752 /CLONE=RGIAN58 /FEA=EST /CNT=2 /TID=Rn.55771.2 /TIER=ConsEnd /STK=0 /UG=Rn.55771 /UG_TITLE=ESTs AW142500 septin 11 Sept11 305227 NM_001107208 0007049 // cell cycle // inferred from electronic annotation /// 0051291 // protein heterooligomerization // not recorded /// 0051301 // cell division // inferred from electronic annotation 0001725 // stress fiber // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0031105 // septin complex // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1396146_at BF522113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522113 /DB_XREF=gi:11630080 /DB_XREF=UI-R-Y0-abc-d-06-0-UI.r2 /CLONE=UI-R-Y0-abc-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.63751.1 /TIER=ConsEnd /STK=0 /UG=Rn.63751 /UG_TITLE=ESTs BF522113 1396147_at BF394600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394600 /DB_XREF=gi:11379499 /DB_XREF=UI-R-CA0-bfx-f-10-0-UI.s1 /CLONE=UI-R-CA0-bfx-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.58306.1 /TIER=ConsEnd /STK=0 /UG=Rn.58306 /UG_TITLE=ESTs BF394600 1396148_at BE106782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106782 /DB_XREF=gi:8498884 /DB_XREF=UI-R-BT1-ast-b-03-0-UI.s1 /CLONE=UI-R-BT1-ast-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.43042.1 /TIER=ConsEnd /STK=0 /UG=Rn.43042 /UG_TITLE=ESTs BE106782 1396149_at AA817682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817682 /DB_XREF=gi:4198214 /DB_XREF=UI-R-A0-aa-b-09-0-UI.s1 /CLONE=UI-R-A0-aa-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.41274.1 /TIER=ConsEnd /STK=0 /UG=Rn.41274 /UG_TITLE=ESTs, Highly similar to DHHC-domain-containing cysteine-rich protein (H.sapiens) AA817682 zinc finger, DHHC-type containing 1 Zdhhc1 291967 NM_001039099 0018345 // protein palmitoylation // inferred from electronic annotation /// 0018345 // protein palmitoylation // not recorded 0008270 // zinc ion binding // inferred from electronic annotation /// 0016409 // palmitoyltransferase activity // inferred from electronic annotation /// 0016409 // palmitoyltransferase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1396150_at AW917275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917275 /DB_XREF=gi:8083022 /DB_XREF=EST348579 /CLONE=RGIEB64 /FEA=EST /CNT=2 /TID=Rn.34781.1 /TIER=ConsEnd /STK=0 /UG=Rn.34781 /UG_TITLE=ESTs AW917275 claudin 1 Cldn1 65129 NM_031699 0016338 // calcium-independent cell-cell adhesion // not recorded /// 0016338 // calcium-independent cell-cell adhesion // inferred from sequence or structural similarity /// 0016338 // calcium-independent cell-cell adhesion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005923 // tight junction // inferred from direct assay /// 0005923 // tight junction // not recorded /// 0005923 // tight junction // inferred from sequence or structural similarity /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016328 // lateral plasma membrane // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030054 // cell junction // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from sequence or structural similarity /// 0042802 // identical protein binding // inferred from electronic annotation 1396151_at AA850797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850797 /DB_XREF=gi:2938337 /DB_XREF=EST193565 /CLONE=ROVAK87 /FEA=EST /CNT=2 /TID=Rn.22864.1 /TIER=ConsEnd /STK=0 /UG=Rn.22864 /UG_TITLE=ESTs AA850797 transmembrane and coiled-coil domain family 1 Tmcc1 312654 XM_001054467 /// XM_232287 1396152_s_at BF399783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399783 /DB_XREF=gi:11384793 /DB_XREF=UI-R-CA0-bhy-e-10-0-UI.s2 /CLONE=UI-R-CA0-bhy-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.29207.1 /TIER=ConsEnd /STK=0 /UG=Rn.29207 /UG_TITLE=ESTs BF399783 insulin-like growth factor binding protein 5 Igfbp5 25285 NM_012817 0001558 // regulation of cell growth // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0014912 // negative regulation of smooth muscle cell migration // inferred from electronic annotation /// 0014912 // negative regulation of smooth muscle cell migration // not recorded /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0017148 // negative regulation of translation // not recorded /// 0023034 // intracellular signaling pathway // inferred from expression pattern /// 0030336 // negative regulation of cell migration // not recorded /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0043569 // negative regulation of insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0043569 // negative regulation of insulin-like growth factor receptor signaling pathway // not recorded /// 0048630 // skeletal muscle tissue growth // inferred from expression pattern /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048662 // negative regulation of smooth muscle cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005520 // insulin-like growth factor binding // inferred from direct assay /// 0005520 // insulin-like growth factor binding // not recorded /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation /// 0031994 // insulin-like growth factor I binding // inferred from electronic annotation /// 0031994 // insulin-like growth factor I binding // not recorded 1396153_at AI555740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555740 /DB_XREF=gi:4488103 /DB_XREF=UI-R-C2p-qs-a-07-0-UI.s1 /CLONE=UI-R-C2p-qs-a-07-0-UI /FEA=EST /CNT=2 /TID=Rn.25459.1 /TIER=ConsEnd /STK=0 /UG=Rn.25459 /UG_TITLE=ESTs AI555740 1396154_at BF559198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559198 /DB_XREF=gi:11668928 /DB_XREF=UI-R-A1-ec-b-02-0-UI.r1 /CLONE=UI-R-A1-ec-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.50843.1 /TIER=ConsEnd /STK=0 /UG=Rn.50843 /UG_TITLE=ESTs BF559198 kinesin family member 5C Kif5c 311024 NM_001107730 0007018 // microtubule-based movement // inferred from electronic annotation /// 0008045 // motor axon guidance // inferred from electronic annotation /// 0008045 // motor axon guidance // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0035253 // ciliary rootlet // inferred from electronic annotation /// 0035253 // ciliary rootlet // not recorded /// 0043005 // neuron projection // inferred from electronic annotation /// 0043005 // neuron projection // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0034190 // apolipoprotein receptor binding // inferred from physical interaction 1396155_at BF283527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283527 /DB_XREF=gi:11214597 /DB_XREF=EST448118 /CLONE=RGIED50 /FEA=EST /CNT=2 /TID=Rn.56113.1 /TIER=ConsEnd /STK=0 /UG=Rn.56113 /UG_TITLE=ESTs, Moderately similar to S16788 probable reverse transcriptase - rat (R.norvegicus) BF283527 1396156_at BE120371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120371 /DB_XREF=gi:8512476 /DB_XREF=UI-R-CA0-baq-f-07-0-UI.s1 /CLONE=UI-R-CA0-baq-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.55081.1 /TIER=ConsEnd /STK=0 /UG=Rn.55081 /UG_TITLE=ESTs BE120371 1396157_at BF548958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548958 /DB_XREF=gi:11640065 /DB_XREF=UI-R-A0-al-a-10-0-UI.r1 /CLONE=UI-R-A0-al-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.32181.1 /TIER=ConsEnd /STK=0 /UG=Rn.32181 /UG_TITLE=ESTs BF548958 1396158_at BE099900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099900 /DB_XREF=gi:8491783 /DB_XREF=UI-R-BJ1-atl-e-01-0-UI.s1 /CLONE=UI-R-BJ1-atl-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.53901.1 /TIER=ConsEnd /STK=0 /UG=Rn.53901 /UG_TITLE=ESTs BE099900 RAS (RAD and GEM)-like GTP-binding 1 Rem1 366232 NM_001025753 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1396159_at BF414927 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414927 /DB_XREF=gi:11402916 /DB_XREF=UI-R-BJ2-bot-f-07-0-UI.s1 /CLONE=UI-R-BJ2-bot-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.62616.1 /TIER=ConsEnd /STK=0 /UG=Rn.62616 /UG_TITLE=ESTs, Weakly similar to LMB2 RAT LAMININ BETA-2 CHAIN PRECURSOR (R.norvegicus) BF414927 laminin, alpha 5 Lama5 140433 NM_001191609 /// XM_001060527 /// XM_215963 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001738 // morphogenesis of a polarized epithelium // inferred from electronic annotation /// 0001738 // morphogenesis of a polarized epithelium // not recorded /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0001942 // hair follicle development // inferred from electronic annotation /// 0001942 // hair follicle development // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // not recorded /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007517 // muscle organ development // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0016331 // morphogenesis of embryonic epithelium // inferred from electronic annotation /// 0016331 // morphogenesis of embryonic epithelium // not recorded /// 0016477 // cell migration // inferred from electronic annotation /// 0016477 // cell migration // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0034446 // substrate adhesion-dependent cell spreading // inferred from electronic annotation /// 0034446 // substrate adhesion-dependent cell spreading // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042384 // cilium assembly // inferred from electronic annotation /// 0042384 // cilium assembly // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0048754 // branching morphogenesis of a tube // not recorded /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // inferred from electronic annotation /// 0060445 // branching involved in salivary gland morphogenesis // not recorded 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005604 // basement membrane // inferred from electronic annotation /// 0005605 // basal lamina // inferred from electronic annotation /// 0005605 // basal lamina // not recorded /// 0005610 // laminin-5 complex // inferred from direct assay /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded /// 0043259 // laminin-10 complex // inferred from electronic annotation /// 0043259 // laminin-10 complex // not recorded 0005178 // integrin binding // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396160_at BF419307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419307 /DB_XREF=gi:11407296 /DB_XREF=UI-R-BJ2-bqq-a-11-0-UI.s1 /CLONE=UI-R-BJ2-bqq-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.43157.1 /TIER=ConsEnd /STK=0 /UG=Rn.43157 /UG_TITLE=ESTs BF419307 1396161_at BI285362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285362 /DB_XREF=gi:14938921 /DB_XREF=UI-R-DB0-byz-b-11-0-UI.s1 /CLONE=UI-R-DB0-byz-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.44601.1 /TIER=ConsEnd /STK=0 /UG=Rn.44601 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) BI285362 1396162_at AI008298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008298 /DB_XREF=gi:3222130 /DB_XREF=EST202749 /CLONE=REMAV58 /FEA=EST /CNT=2 /TID=Rn.55991.1 /TIER=ConsEnd /STK=0 /UG=Rn.55991 /UG_TITLE=ESTs AI008298 1396163_at BF563316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563316 /DB_XREF=gi:11673046 /DB_XREF=UI-R-BJ0p-aiq-h-02-0-UI.r1 /CLONE=UI-R-BJ0p-aiq-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.74137.1 /TIER=ConsEnd /STK=0 /UG=Rn.74137 /UG_TITLE=ESTs BF563316 interferon gamma induced GTPase Igtp 303163 NM_001008765 0006184 // GTP catabolic process // not recorded 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003924 // GTPase activity // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0016817 // hydrolase activity, acting on acid anhydrides // inferred from electronic annotation 1396164_at BE105096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105096 /DB_XREF=gi:8497197 /DB_XREF=UI-R-BX0-asg-d-07-0-UI.s1 /CLONE=UI-R-BX0-asg-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.49793.1 /TIER=ConsEnd /STK=0 /UG=Rn.49793 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) BE105096 zinc finger protein 668 Znf668 309002 NM_001107553 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1396165_at AI601887 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI601887 /DB_XREF=gi:4611048 /DB_XREF=UI-R-AD0-wa-g-01-0-UI.s2 /CLONE=UI-R-AD0-wa-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.39342.1 /TIER=ConsEnd /STK=0 /UG=Rn.39342 /UG_TITLE=ESTs AI601887 Myosin, heavy chain 6, cardiac muscle, alpha Myh6 29556 NM_017239 0000302 // response to reactive oxygen species // inferred from expression pattern /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002026 // regulation of the force of heart contraction // not recorded /// 0002027 // regulation of heart rate // inferred from electronic annotation /// 0002027 // regulation of heart rate // not recorded /// 0006200 // ATP catabolic process // inferred from mutant phenotype /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006936 // muscle contraction // inferred from mutant phenotype /// 0006936 // muscle contraction // not recorded /// 0006936 // muscle contraction // inferred from electronic annotation /// 0006941 // striated muscle contraction // inferred from electronic annotation /// 0006941 // striated muscle contraction // not recorded /// 0007512 // adult heart development // inferred from electronic annotation /// 0007512 // adult heart development // not recorded /// 0007522 // visceral muscle development // inferred from electronic annotation /// 0007522 // visceral muscle development // not recorded /// 0008016 // regulation of heart contraction // not recorded /// 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008217 // regulation of blood pressure // not recorded /// 0030048 // actin filament-based movement // inferred from electronic annotation /// 0030048 // actin filament-based movement // not recorded /// 0030049 // muscle filament sliding // inferred from electronic annotation /// 0030049 // muscle filament sliding // not recorded /// 0030239 // myofibril assembly // not recorded /// 0030239 // myofibril assembly // inferred from electronic annotation /// 0043462 // regulation of ATPase activity // inferred from electronic annotation /// 0043462 // regulation of ATPase activity // not recorded /// 0045214 // sarcomere organization // inferred from electronic annotation /// 0045214 // sarcomere organization // not recorded /// 0048739 // cardiac muscle fiber development // inferred from electronic annotation /// 0048739 // cardiac muscle fiber development // not recorded /// 0055009 // atrial cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055009 // atrial cardiac muscle tissue morphogenesis // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005859 // muscle myosin complex // inferred from direct assay /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0016459 // myosin complex // not recorded /// 0016459 // myosin complex // inferred from electronic annotation /// 0030016 // myofibril // inferred from direct assay /// 0030016 // myofibril // not recorded /// 0030016 // myofibril // inferred from electronic annotation /// 0032982 // myosin filament // inferred from electronic annotation /// 0043292 // contractile fiber // inferred from mutant phenotype /// 0048471 // perinuclear region of cytoplasm // inferred from mutant phenotype 0000146 // microfilament motor activity // inferred from mutant phenotype /// 0000146 // microfilament motor activity // not recorded /// 0000146 // microfilament motor activity // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from electronic annotation /// 0008307 // structural constituent of muscle // inferred from electronic annotation /// 0008307 // structural constituent of muscle // not recorded /// 0016887 // ATPase activity // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from mutant phenotype /// 0030898 // actin-dependent ATPase activity // inferred from electronic annotation /// 0030898 // actin-dependent ATPase activity // not recorded /// 0030899 // calcium-dependent ATPase activity // inferred from mutant phenotype /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0051015 // actin filament binding // inferred from electronic annotation 1396166_at AA893270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893270 /DB_XREF=gi:3020149 /DB_XREF=EST197073 /CLONE=RKIBE33 /FEA=EST /CNT=2 /TID=Rn.48855.1 /TIER=ConsEnd /STK=0 /UG=Rn.48855 /UG_TITLE=ESTs, Weakly similar to ZF90 MOUSE ZINC FINGER PROTEIN 90 (M.musculus) AA893270 zinc finger protein 746 Znf746 312303 NM_001100852 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1396167_at BF555852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555852 /DB_XREF=gi:11665582 /DB_XREF=UI-R-A1-dr-c-03-0-UI.r1 /CLONE=UI-R-A1-dr-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.49000.1 /TIER=ConsEnd /STK=0 /UG=Rn.49000 /UG_TITLE=ESTs, Weakly similar to LYSOSOMAL ACID PHOSPHATASE PRECURSOR (R.norvegicus) BF555852 acid phosphatase 6, lysophosphatidic Acp6 295305 NM_001031645 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003993 // acid phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396168_at BF564567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564567 /DB_XREF=gi:11674297 /DB_XREF=UI-R-C4-alx-e-03-0-UI.r1 /CLONE=UI-R-C4-alx-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.48513.1 /TIER=ConsEnd /STK=0 /UG=Rn.48513 /UG_TITLE=ESTs BF564567 1396169_at AI535351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535351 /DB_XREF=gi:4449486 /DB_XREF=UI-R-C3-sw-h-11-0-UI.s1 /CLONE=UI-R-C3-sw-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.39259.1 /TIER=ConsEnd /STK=0 /UG=Rn.39259 /UG_TITLE=ESTs, Weakly similar to HMG2 RAT HIGH MOBILITY GROUP PROTEIN HMG2 (R.norvegicus) AI535351 1396170_at BG663444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663444 /DB_XREF=gi:13885366 /DB_XREF=DRAAAJB09 /CLONE=DRAAAJB09 /FEA=EST /CNT=2 /TID=Rn.52871.1 /TIER=ConsEnd /STK=0 /UG=Rn.52871 /UG_TITLE=ESTs, Weakly similar to T22785 hypothetical protein F56G4.4 - Caenorhabditis elegans (C.elegans) BG663444 WW domain binding protein 4 (formin binding protein 21) Wbp4 114765 NM_053766 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0045292 // nuclear mRNA cis splicing, via spliceosome // inferred from electronic annotation /// 0045292 // nuclear mRNA cis splicing, via spliceosome // not recorded /// 0045292 // nuclear mRNA cis splicing, via spliceosome // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded /// 0016607 // nuclear speck // inferred from sequence or structural similarity 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070064 // proline-rich region binding // inferred from electronic annotation /// 0070064 // proline-rich region binding // not recorded 1396171_at BF552272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552272 /DB_XREF=gi:11662002 /DB_XREF=UI-R-C1-lp-a-02-0-UI.r1 /CLONE=UI-R-C1-lp-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.79868.1 /TIER=ConsEnd /STK=0 /UG=Rn.79868 /UG_TITLE=ESTs BF552272 peptidylprolyl isomerase (cyclophilin)-like 4 Ppil4 361449 NM_001108457 0006457 // protein folding // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1396172_at BG671873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671873 /DB_XREF=gi:13893972 /DB_XREF=DRNBZA07 /CLONE=DRNBZA07 /FEA=EST /CNT=2 /TID=Rn.61943.1 /TIER=ConsEnd /STK=0 /UG=Rn.61943 /UG_TITLE=ESTs, Highly similar to A56519 CDC16 protein (H.sapiens) BG671873 cell division cycle 16 homolog (S. cerevisiae) Cdc16 290875 NM_001024744 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070979 // protein K11-linked ubiquitination // inferred from electronic annotation /// 0070979 // protein K11-linked ubiquitination // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005680 // anaphase-promoting complex // inferred from electronic annotation /// 0005680 // anaphase-promoting complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005829 // cytosol // not recorded /// 0005876 // spindle microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396173_at AW533345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533345 /DB_XREF=gi:7175759 /DB_XREF=UI-R-BU0-anf-g-10-0-UI.s1 /CLONE=UI-R-BU0-anf-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.48099.1 /TIER=ConsEnd /STK=0 /UG=Rn.48099 /UG_TITLE=ESTs, Weakly similar to C01G5.6.p (Caenorhabditis elegans) (C.elegans) AW533345 nuclear receptor interacting protein 3 Nrip3 361625 NM_001108498 0006508 // proteolysis // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396174_at BM383970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383970 /DB_XREF=gi:18184023 /DB_XREF=UI-R-DM1-ckc-m-03-0-UI.s1 /CLONE=UI-R-DM1-ckc-m-03-0-UI /FEA=EST /CNT=2 /TID=Rn.49596.1 /TIER=ConsEnd /STK=0 /UG=Rn.49596 /UG_TITLE=ESTs BM383970 1396175_at BG670617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670617 /DB_XREF=gi:13892716 /DB_XREF=DRNBDC10 /CLONE=DRNBDC10 /FEA=EST /CNT=2 /TID=Rn.69837.1 /TIER=ConsEnd /STK=0 /UG=Rn.69837 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) BG670617 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1396176_at BF552028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552028 /DB_XREF=gi:11661758 /DB_XREF=UI-R-C2p-og-d-06-0-UI.r1 /CLONE=UI-R-C2p-og-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.72654.1 /TIER=ConsEnd /STK=0 /UG=Rn.72654 /UG_TITLE=ESTs BF552028 dysbindin (dystrobrevin binding protein 1) domain containing 1 Dbndd1 361437 NM_001014156 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1396177_at BF565900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565900 /DB_XREF=gi:11675630 /DB_XREF=UI-R-BO1-ajr-a-09-0-UI.r1 /CLONE=UI-R-BO1-ajr-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.41634.1 /TIER=ConsEnd /STK=0 /UG=Rn.41634 /UG_TITLE=ESTs BF565900 1396178_at BF523060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523060 /DB_XREF=gi:11630985 /DB_XREF=UI-R-C2p-se-h-06-0-UI.r1 /CLONE=UI-R-C2p-se-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.48324.1 /TIER=ConsEnd /STK=0 /UG=Rn.48324 /UG_TITLE=ESTs, Moderately similar to T31099 myosin-RhoGAP protein, Myr 7 - rat (R.norvegicus) BF523060 1396179_at BF406314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406314 /DB_XREF=gi:11394289 /DB_XREF=UI-R-CA1-bjf-j-01-0-UI.s1 /CLONE=UI-R-CA1-bjf-j-01-0-UI /FEA=EST /CNT=2 /TID=Rn.60942.1 /TIER=ConsEnd /STK=0 /UG=Rn.60942 /UG_TITLE=ESTs, Highly similar to 2122208A adenylosuccinate synthetase:ISOTYPE=muscle (M.musculus) BF406314 1396180_at AA997691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997691 /DB_XREF=gi:4280973 /DB_XREF=UI-R-C0-hp-e-08-0-UI.s1 /CLONE=UI-R-C0-hp-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.61107.1 /TIER=ConsEnd /STK=0 /UG=Rn.61107 /UG_TITLE=ESTs AA997691 leucine rich repeat containing 16A Lrrc16a 306941 NM_001191692 /// XM_001070748 /// XM_225336 1396181_at BF420450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420450 /DB_XREF=gi:11408479 /DB_XREF=UI-R-BJ2-bpw-f-03-0-UI.s1 /CLONE=UI-R-BJ2-bpw-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.66148.1 /TIER=ConsEnd /STK=0 /UG=Rn.66148 /UG_TITLE=ESTs, Weakly similar to CERU RAT CERULOPLASMIN PRECURSOR (R.norvegicus) BF420450 coagulation factor VIII, procoagulant component F8 302470 NM_183331 0007155 // cell adhesion // inferred from electronic annotation /// 0007596 // blood coagulation // inferred from direct assay /// 0007597 // blood coagulation, intrinsic pathway // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0031093 // platelet alpha granule lumen // not recorded 0004252 // serine-type endopeptidase activity // inferred from direct assay /// 0005507 // copper ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1396182_at BF523195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523195 /DB_XREF=gi:11631162 /DB_XREF=UI-R-C3-sr-h-07-0-UI.r1 /CLONE=UI-R-C3-sr-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.43474.1 /TIER=ConsEnd /STK=0 /UG=Rn.43474 /UG_TITLE=ESTs, Weakly similar to D64883 hypothetical protein b1337 - Escherichia coli (E.coli) BF523195 peptidase M20 domain containing 2 Pm20d2 313130 NM_001107922 0008152 // metabolic process // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1396183_at AI113251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113251 /DB_XREF=gi:3513200 /DB_XREF=UI-R-C2p-nt-d-04-0-UI.s1 /CLONE=UI-R-C2p-nt-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.26967.1 /TIER=ConsEnd /STK=0 /UG=Rn.26967 /UG_TITLE=ESTs AI113251 1396184_at AW435238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435238 /DB_XREF=gi:6966545 /DB_XREF=UI-R-BJ0p-agb-b-07-0-UI.s1 /CLONE=UI-R-BJ0p-agb-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.54357.1 /TIER=ConsEnd /STK=0 /UG=Rn.54357 /UG_TITLE=ESTs AW435238 1396185_at BF566807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF566807 /DB_XREF=gi:11676537 /DB_XREF=UI-R-BJ0p-afm-h-07-0-UI.r1 /CLONE=UI-R-BJ0p-afm-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.64430.1 /TIER=ConsEnd /STK=0 /UG=Rn.64430 /UG_TITLE=ESTs, Weakly similar to Arabidopsis DNA-damage-repair protein D11 like (Caenorhabditis elegans) (C.elegans) BF566807 RNA binding motif protein 17 Rbm17 291295 NM_001013058 0005622 // intracellular // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396186_at BE095907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095907 /DB_XREF=gi:8486838 /DB_XREF=UI-R-BU0-apd-a-06-0-UI.s1 /CLONE=UI-R-BU0-apd-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.26746.1 /TIER=ConsEnd /STK=0 /UG=Rn.26746 /UG_TITLE=ESTs BE095907 1396187_at AI136551 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136551 /DB_XREF=gi:3637328 /DB_XREF=UI-R-C2p-nw-b-06-0-UI.s1 /CLONE=UI-R-C2p-nw-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.27170.1 /TIER=ConsEnd /STK=0 /UG=Rn.27170 /UG_TITLE=ESTs AI136551 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 Ddx21 317399 NM_001037201 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1396188_at BE127432 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE127432 /DB_XREF=gi:8550165 /DB_XREF=DEPA1181 /FEA=EST /CNT=2 /TID=Rn.79058.1 /TIER=ConsEnd /STK=0 /UG=Rn.79058 /UG_TITLE=ESTs, Weakly similar to rhoB gene (Rattus norvegicus) (R.norvegicus) BE127432 ras homolog gene family, member J Rhoj 299145 NM_001008320 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // not recorded /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0008360 // regulation of cell shape // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1396189_at BI274116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274116 /DB_XREF=gi:14884735 /DB_XREF=UI-R-CW0-bwf-b-07-0-UI.s1 /CLONE=UI-R-CW0-bwf-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.79953.1 /TIER=ConsEnd /STK=0 /UG=Rn.79953 /UG_TITLE=ESTs BI274116 1396190_x_at BI274116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274116 /DB_XREF=gi:14884735 /DB_XREF=UI-R-CW0-bwf-b-07-0-UI.s1 /CLONE=UI-R-CW0-bwf-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.79953.1 /TIER=ConsEnd /STK=0 /UG=Rn.79953 /UG_TITLE=ESTs BI274116 1396191_at BF395978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395978 /DB_XREF=gi:11380949 /DB_XREF=UI-R-BS2-bdt-g-11-0-UI.s1 /CLONE=UI-R-BS2-bdt-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.58492.1 /TIER=ConsEnd /STK=0 /UG=Rn.58492 /UG_TITLE=ESTs BF395978 1396192_at H31517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31517 /DB_XREF=gi:976934 /DB_XREF=EST105613 /CLONE=RPCAM26 /FEA=EST /CNT=2 /TID=Rn.25807.1 /TIER=ConsEnd /STK=0 /UG=Rn.25807 /UG_TITLE=ESTs H31517 nuclear protein, ataxia-telangiectasia locus Npat 315666 NM_001108147 0000083 // regulation of transcription involved in G1/S phase of mitotic cell cycle // not recorded /// 0010468 // regulation of gene expression // not recorded 0005634 // nucleus // not recorded /// 0015030 // Cajal body // not recorded /// 0044428 // nuclear part // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003713 // transcription coactivator activity // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0047485 // protein N-terminus binding // not recorded 1396193_at AI575923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575923 /DB_XREF=gi:4560299 /DB_XREF=UI-R-Y0-uz-b-02-0-UI.s1 /CLONE=UI-R-Y0-uz-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.38073.1 /TIER=ConsEnd /STK=0 /UG=Rn.38073 /UG_TITLE=ESTs AI575923 1396194_at AW434492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434492 /DB_XREF=gi:6965799 /DB_XREF=UI-R-BJ0p-afr-g-04-0-UI.s1 /CLONE=UI-R-BJ0p-afr-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.54305.1 /TIER=ConsEnd /STK=0 /UG=Rn.54305 /UG_TITLE=ESTs AW434492 1396195_at BF550130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550130 /DB_XREF=gi:11659854 /DB_XREF=UI-R-E0-bt-a-12-0-UI.r1 /CLONE=UI-R-E0-bt-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.74201.1 /TIER=ConsEnd /STK=0 /UG=Rn.74201 /UG_TITLE=ESTs BF550130 ankyrin repeat domain 13a Ankrd13a 360823 NM_001012148 1396196_at BF290745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290745 /DB_XREF=gi:11221815 /DB_XREF=EST455336 /CLONE=RGIID19 /FEA=EST /CNT=2 /TID=Rn.55970.1 /TIER=ConsEnd /STK=0 /UG=Rn.55970 /UG_TITLE=ESTs BF290745 1396197_at BF547499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547499 /DB_XREF=gi:11638606 /DB_XREF=UI-R-C2p-rv-a-06-0-UI.r1 /CLONE=UI-R-C2p-rv-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.49359.1 /TIER=ConsEnd /STK=0 /UG=Rn.49359 /UG_TITLE=ESTs BF547499 Zinc finger, DHHC-type containing 5 Zdhhc5 362156 NM_001039338 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1396198_at BF282909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282909 /DB_XREF=gi:11213979 /DB_XREF=EST447500 /CLONE=RGIDU84 /FEA=EST /CNT=2 /TID=Rn.55227.1 /TIER=ConsEnd /STK=0 /UG=Rn.55227 /UG_TITLE=ESTs, Highly similar to Y140_HUMAN HYPOTHETICAL PROTEIN KIAA0140 (H.sapiens) BF282909 Similar to RIKEN cDNA A930008G19 RGD1310799 309060 NM_001107556 1396199_at BI289662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289662 /DB_XREF=gi:14947454 /DB_XREF=UI-R-DK0-cfi-f-07-0-UI.s1 /CLONE=UI-R-DK0-cfi-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.79062.1 /TIER=ConsEnd /STK=0 /UG=Rn.79062 /UG_TITLE=ESTs BI289662 hypothetical protein LOC690326 LOC690326 690326 NM_001109578 1396200_at BF419037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419037 /DB_XREF=gi:11407026 /DB_XREF=UI-R-BJ2-bqm-g-12-0-UI.s1 /CLONE=UI-R-BJ2-bqm-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.63469.1 /TIER=ConsEnd /STK=0 /UG=Rn.63469 /UG_TITLE=ESTs BF419037 BEN domain containing 7 Bend7 361275 NM_001191834 /// XM_001071606 /// XM_341560 0005515 // protein binding // not recorded 1396201_at BF543295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543295 /DB_XREF=gi:11634402 /DB_XREF=UI-R-Y0-abd-d-07-0-UI.r1 /CLONE=UI-R-Y0-abd-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.81848.1 /TIER=ConsEnd /STK=0 /UG=Rn.81848 /UG_TITLE=ESTs, Weakly similar to TC17 RAT TRANSCRIPTION FACTOR 17 (R.norvegicus) BF543295 1396202_at BF401339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401339 /DB_XREF=gi:11389314 /DB_XREF=UI-R-CA0-bgs-e-08-0-UI.s1 /CLONE=UI-R-CA0-bgs-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.32525.1 /TIER=ConsEnd /STK=0 /UG=Rn.32525 /UG_TITLE=ESTs BF401339 1396203_at BE112689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112689 /DB_XREF=gi:8504794 /DB_XREF=UI-R-BJ1-avj-f-08-0-UI.s1 /CLONE=UI-R-BJ1-avj-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.34785.1 /TIER=ConsEnd /STK=0 /UG=Rn.34785 /UG_TITLE=ESTs BE112689 missing oocyte, meiosis regulator, homolog (Drosophila) Mios 362324 NM_001173554 /// XM_001055421 /// XM_342642 1396204_at AI706471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI706471 /DB_XREF=gi:4994371 /DB_XREF=UI-R-AA1-zx-f-04-0-UI.s1 /CLONE=UI-R-AA1-zx-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.40600.1 /TIER=ConsEnd /STK=0 /UG=Rn.40600 /UG_TITLE=ESTs AI706471 1396205_at BI303419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303419 /DB_XREF=gi:14979699 /DB_XREF=UI-R-DQ0-cja-m-05-0-UI.s1 /CLONE=UI-R-DQ0-cja-m-05-0-UI /FEA=EST /CNT=2 /TID=Rn.42381.1 /TIER=ConsEnd /STK=0 /UG=Rn.42381 /UG_TITLE=ESTs, Weakly similar to S12207 hypothetical protein (M.musculus) BI303419 1396206_at BG665525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665525 /DB_XREF=gi:13887447 /DB_XREF=DRACEB08 /CLONE=DRACEB08 /FEA=EST /CNT=2 /TID=Rn.74088.1 /TIER=ConsEnd /STK=0 /UG=Rn.74088 /UG_TITLE=ESTs, Moderately similar to T08731 hypothetical protein DKFZp566A0946.1 (H.sapiens) BG665525 similar to Docking protein 5 (Downstream of tyrosine kinase 5) (Protein dok-5) RGD1562846 502694 NM_001109344 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation 0005066 // transmembrane receptor protein tyrosine kinase signaling protein activity // inferred from electronic annotation /// 0005158 // insulin receptor binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1396207_at BF565167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565167 /DB_XREF=gi:11674897 /DB_XREF=UI-R-BO1-ajs-h-05-0-UI.r1 /CLONE=UI-R-BO1-ajs-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.76318.1 /TIER=ConsEnd /STK=0 /UG=Rn.76318 /UG_TITLE=ESTs, Weakly similar to PTNL RAT PROTEIN TYROSINE PHOSPHATASE, NON-RECEPTOR TYPE 21 (R.norvegicus) BF565167 radixin Rdx 315655 NM_001005889 0030033 // microvillus assembly // not recorded /// 0045176 // apical protein localization // inferred from mutant phenotype /// 0045176 // apical protein localization // not recorded /// 0051016 // barbed-end actin filament capping // inferred from direct assay /// 0070848 // response to growth factor stimulus // inferred from expression pattern 0001726 // ruffle // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005902 // microvillus // inferred from direct assay /// 0005902 // microvillus // not recorded /// 0005913 // cell-cell adherens junction // inferred from direct assay /// 0019898 // extrinsic to membrane // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030175 // filopodium // not recorded /// 0030496 // midbody // inferred from direct assay /// 0032154 // cleavage furrow // inferred from direct assay /// 0032420 // stereocilium // not recorded /// 0045177 // apical part of cell // not recorded 0003779 // actin binding // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation 1396208_at BM389807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389807 /DB_XREF=gi:18189860 /DB_XREF=UI-R-CN1-cjp-h-11-0-UI.s1 /CLONE=UI-R-CN1-cjp-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.82318.1 /TIER=ConsEnd /STK=0 /UG=Rn.82318 /UG_TITLE=ESTs BM389807 gamma-glutamyltransferase 5 Ggt5 29566 NM_019235 0006750 // glutathione biosynthetic process // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0006979 // response to oxidative stress // traceable author statement /// 0008152 // metabolic process // not recorded /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0019370 // leukotriene biosynthetic process // inferred from electronic annotation /// 0019370 // leukotriene biosynthetic process // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003840 // gamma-glutamyltransferase activity // inferred from electronic annotation /// 0003840 // gamma-glutamyltransferase activity // not recorded /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1396209_at BE117343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117343 /DB_XREF=gi:8509448 /DB_XREF=UI-R-BS1-ayn-f-08-0-UI.s1 /CLONE=UI-R-BS1-ayn-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.29151.1 /TIER=ConsEnd /STK=0 /UG=Rn.29151 /UG_TITLE=ESTs BE117343 mitochondrial carrier triple repeat 1-like Mcart1l 679135 NM_001127602 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1396210_at BF387033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387033 /DB_XREF=gi:11371857 /DB_XREF=UI-R-CA1-bbp-e-02-0-UI.s1 /CLONE=UI-R-CA1-bbp-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.44027.1 /TIER=ConsEnd /STK=0 /UG=Rn.44027 /UG_TITLE=ESTs BF387033 1396211_at BE100009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100009 /DB_XREF=gi:8491894 /DB_XREF=UI-R-BJ1-atr-f-08-0-UI.s1 /CLONE=UI-R-BJ1-atr-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.44090.1 /TIER=ConsEnd /STK=0 /UG=Rn.44090 /UG_TITLE=ESTs BE100009 1396212_at BE114358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114358 /DB_XREF=gi:8506463 /DB_XREF=UI-R-CA0-axp-c-10-0-UI.s1 /CLONE=UI-R-CA0-axp-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.28073.1 /TIER=ConsEnd /STK=0 /UG=Rn.28073 /UG_TITLE=ESTs BE114358 1396213_at BF547413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547413 /DB_XREF=gi:11638520 /DB_XREF=UI-R-C2p-rm-g-10-0-UI.r1 /CLONE=UI-R-C2p-rm-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.64428.1 /TIER=ConsEnd /STK=0 /UG=Rn.64428 /UG_TITLE=ESTs BF547413 1396214_at BF562720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562720 /DB_XREF=gi:11672450 /DB_XREF=UI-R-BO0-aid-a-05-0-UI.r1 /CLONE=UI-R-BO0-aid-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.51917.1 /TIER=ConsEnd /STK=0 /UG=Rn.51917 /UG_TITLE=ESTs BF562720 KIT ligand Kitlg 60427 NM_021843 /// NM_021844 0001541 // ovarian follicle development // inferred from direct assay /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0002763 // positive regulation of myeloid leukocyte differentiation // inferred from electronic annotation /// 0002763 // positive regulation of myeloid leukocyte differentiation // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0033026 // negative regulation of mast cell apoptosis // inferred from electronic annotation /// 0033026 // negative regulation of mast cell apoptosis // not recorded /// 0035234 // germ cell programmed cell death // inferred from electronic annotation /// 0035234 // germ cell programmed cell death // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043406 // positive regulation of MAP kinase activity // inferred from electronic annotation /// 0043406 // positive regulation of MAP kinase activity // not recorded /// 0045636 // positive regulation of melanocyte differentiation // inferred from electronic annotation /// 0045636 // positive regulation of melanocyte differentiation // not recorded /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0070668 // positive regulation of mast cell proliferation // inferred from electronic annotation /// 0070668 // positive regulation of mast cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0005125 // cytokine activity // inferred from electronic annotation /// 0005125 // cytokine activity // not recorded /// 0005173 // stem cell factor receptor binding // inferred from electronic annotation /// 0005173 // stem cell factor receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1396215_at BF566901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF566901 /DB_XREF=gi:11676631 /DB_XREF=UI-R-BJ0p-aft-g-02-0-UI.r1 /CLONE=UI-R-BJ0p-aft-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.55083.1 /TIER=ConsEnd /STK=0 /UG=Rn.55083 /UG_TITLE=ESTs BF566901 1396216_at BF551351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551351 /DB_XREF=gi:11661081 /DB_XREF=UI-R-C0-in-c-08-0-UI.r1 /CLONE=UI-R-C0-in-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.76206.1 /TIER=ConsEnd /STK=0 /UG=Rn.76206 /UG_TITLE=ESTs BF551351 leucine rich repeat containing 8 family, member A Lrrc8a 311846 NM_001024782 0002329 // pre-B cell differentiation // not recorded /// 0002329 // pre-B cell differentiation // inferred from sequence or structural similarity /// 0002329 // pre-B cell differentiation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1396217_at BF542447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542447 /DB_XREF=gi:11633554 /DB_XREF=UI-R-C3-si-a-07-0-UI.r1 /CLONE=UI-R-C3-si-a-07-0-UI /FEA=EST /CNT=2 /TID=Rn.34809.1 /TIER=ConsEnd /STK=0 /UG=Rn.34809 /UG_TITLE=ESTs BF542447 1396218_at BF389585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389585 /DB_XREF=gi:11374420 /DB_XREF=UI-R-CJ0-bfd-d-10-0-UI.s1 /CLONE=UI-R-CJ0-bfd-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.50310.1 /TIER=ConsEnd /STK=0 /UG=Rn.50310 /UG_TITLE=ESTs BF389585 1396219_at BF542315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542315 /DB_XREF=gi:11633422 /DB_XREF=UI-R-C2p-np-a-01-0-UI.r1 /CLONE=UI-R-C2p-np-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.26923.1 /TIER=ConsEnd /STK=0 /UG=Rn.26923 /UG_TITLE=ESTs, Moderately similar to NID2 MOUSE NIDOGEN-2 PRECURSOR (M.musculus) BF542315 hypothetical protein LOC100363207 /// nidogen 2 /// similar to nidogen 2 protein LOC100363207 /// LOC501268 /// RGD1562856 100363207 /// 498627 /// 501268 XM_002727267 /// XM_002728407 /// XM_002729140 /// XM_002730087 1396220_at BI302034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302034 /DB_XREF=gi:14978314 /DB_XREF=UI-R-DM0-ciq-j-12-0-UI.s1 /CLONE=UI-R-DM0-ciq-j-12-0-UI /FEA=EST /CNT=2 /TID=Rn.43215.1 /TIER=ConsEnd /STK=0 /UG=Rn.43215 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BI302034 1396221_at H31609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31609 /DB_XREF=gi:977026 /DB_XREF=EST105813 /CLONE=RPCAT21 /FEA=EST /CNT=2 /TID=Rn.73758.1 /TIER=ConsEnd /STK=0 /UG=Rn.73758 /UG_TITLE=ESTs H31609 UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6 B3galt6 298690 NM_001106699 0006024 // glycosaminoglycan biosynthetic process // not recorded /// 0006486 // protein glycosylation // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005797 // Golgi medial cisterna // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008378 // galactosyltransferase activity // inferred from electronic annotation /// 0008499 // UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0035250 // UDP-galactosyltransferase activity // not recorded 1396222_at BE096554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096554 /DB_XREF=gi:8487485 /DB_XREF=UI-R-BU0-aph-e-05-0-UI.s1 /CLONE=UI-R-BU0-aph-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.41944.1 /TIER=ConsEnd /STK=0 /UG=Rn.41944 /UG_TITLE=ESTs BE096554 1396223_at AW252930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252930 /DB_XREF=gi:6596521 /DB_XREF=UI-R-BJ0-adk-d-04-0-UI.s1 /CLONE=UI-R-BJ0-adk-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.44792.1 /TIER=ConsEnd /STK=0 /UG=Rn.44792 /UG_TITLE=ESTs AW252930 1396224_at BF389985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389985 /DB_XREF=gi:11374827 /DB_XREF=UI-R-BS2-bdr-a-03-0-UI.s1 /CLONE=UI-R-BS2-bdr-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.28520.1 /TIER=ConsEnd /STK=0 /UG=Rn.28520 /UG_TITLE=ESTs BF389985 1396225_at BG666316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666316 /DB_XREF=gi:13888238 /DB_XREF=DRABXB05 /CLONE=DRABXB05 /FEA=EST /CNT=2 /TID=Rn.26543.1 /TIER=ConsEnd /STK=0 /UG=Rn.26543 /UG_TITLE=ESTs BG666316 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1396226_at BI276258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276258 /DB_XREF=gi:14920989 /DB_XREF=UI-R-CX0-bxf-h-08-0-UI.s1 /CLONE=UI-R-CX0-bxf-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.27297.1 /TIER=ConsEnd /STK=0 /UG=Rn.27297 /UG_TITLE=ESTs BI276258 1396227_at BG374845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374845 /DB_XREF=gi:13299317 /DB_XREF=UI-R-CV1-bss-b-08-0-UI.s1 /CLONE=UI-R-CV1-bss-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.27348.1 /TIER=ConsEnd /STK=0 /UG=Rn.27348 /UG_TITLE=ESTs BG374845 mitochondrial ribosome recycling factor Mrrf 311903 NM_001008354 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0032790 // ribosome disassembly // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1396228_at BG380184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380184 /DB_XREF=gi:13304656 /DB_XREF=UI-R-CS0-btq-a-07-0-UI.s1 /CLONE=UI-R-CS0-btq-a-07-0-UI /FEA=EST /CNT=2 /TID=Rn.40828.1 /TIER=ConsEnd /STK=0 /UG=Rn.40828 /UG_TITLE=ESTs BG380184 similar to chromosome 9 open reading frame 5 RGD1308958 298020 XM_001059736 /// XM_216388 1396229_at BG378004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378004 /DB_XREF=gi:13302476 /DB_XREF=UI-R-CU0-bvh-g-01-0-UI.s1 /CLONE=UI-R-CU0-bvh-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.41617.1 /TIER=ConsEnd /STK=0 /UG=Rn.41617 /UG_TITLE=ESTs BG378004 1396230_at BM389621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389621 /DB_XREF=gi:18189674 /DB_XREF=UI-R-CN1-cjo-e-15-0-UI.s1 /CLONE=UI-R-CN1-cjo-e-15-0-UI /FEA=EST /CNT=2 /TID=Rn.41701.1 /TIER=ConsEnd /STK=0 /UG=Rn.41701 /UG_TITLE=ESTs BM389621 1396231_at BM387939 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387939 /DB_XREF=gi:18187992 /DB_XREF=UI-R-CN1-cjk-f-24-0-UI.s1 /CLONE=UI-R-CN1-cjk-f-24-0-UI /FEA=EST /CNT=2 /TID=Rn.43302.1 /TIER=ConsEnd /STK=0 /UG=Rn.43302 /UG_TITLE=ESTs BM387939 RAS protein activator like 3 Rasal3 314596 NM_001134562 0007165 // signal transduction // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation 1396232_at AW529318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529318 /DB_XREF=gi:7171732 /DB_XREF=UI-R-BT1-akm-f-01-0-UI.s1 /CLONE=UI-R-BT1-akm-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.47158.1 /TIER=ConsEnd /STK=0 /UG=Rn.47158 /UG_TITLE=ESTs AW529318 1396233_at BE114013 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114013 /DB_XREF=gi:8506118 /DB_XREF=UI-R-CA0-axn-a-08-0-UI.s1 /CLONE=UI-R-CA0-axn-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.52284.1 /TIER=ConsEnd /STK=0 /UG=Rn.52284 /UG_TITLE=ESTs BE114013 Arylsulfatase family, member K Arsk 365619 NM_001047917 0008152 // metabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008484 // sulfuric ester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1396234_at AI136886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136886 /DB_XREF=gi:3637663 /DB_XREF=UI-R-C2p-of-f-07-0-UI.s1 /CLONE=UI-R-C2p-of-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.64435.1 /TIER=ConsEnd /STK=0 /UG=Rn.64435 /UG_TITLE=ESTs, Moderately similar to COE1 RAT TRANSCRIPTION FACTOR COE1 (R.norvegicus) AI136886 early B-cell factor 3 Ebf3 361668 NM_001108506 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1396235_at AI137779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137779 /DB_XREF=gi:3638556 /DB_XREF=UI-R-E1-fx-g-01-0-UI.s1 /CLONE=UI-R-E1-fx-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.27508.1 /TIER=ConsEnd /STK=0 /UG=Rn.27508 /UG_TITLE=ESTs AI137779 DDB1 and CUL4 associated factor 10 Dcaf10 313242 NM_001107935 0080008 // CUL4 RING ubiquitin ligase complex // not recorded 1396236_at AI145896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145896 /DB_XREF=gi:3667695 /DB_XREF=UI-R-BT0-qg-e-05-0-UI.s1 /CLONE=UI-R-BT0-qg-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.28658.1 /TIER=ConsEnd /STK=0 /UG=Rn.28658 /UG_TITLE=ESTs AI145896 1396237_at AA923873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA923873 /DB_XREF=gi:4233965 /DB_XREF=UI-R-A1-dr-h-10-0-UI.s1 /CLONE=UI-R-A1-dr-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.32576.1 /TIER=ConsEnd /STK=0 /UG=Rn.32576 /UG_TITLE=ESTs AA923873 1396238_at AI763990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763990 /DB_XREF=gi:5209925 /DB_XREF=UI-R-Y0-acv-e-08-0-UI.s1 /CLONE=UI-R-Y0-acv-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.34579.1 /TIER=ConsEnd /STK=0 /UG=Rn.34579 /UG_TITLE=ESTs AI763990 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14) Galnt14 313878 NM_001012109 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005529 // sugar binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1396239_at AI502035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502035 /DB_XREF=gi:4399886 /DB_XREF=UI-R-E0-dg-g-06-0-UI.s1 /CLONE=UI-R-E0-dg-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.35597.1 /TIER=ConsEnd /STK=0 /UG=Rn.35597 /UG_TITLE=ESTs AI502035 similar to RIKEN cDNA 2310008H04 RGD1566036 498119 NM_001100988 1396240_at AI575096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575096 /DB_XREF=gi:4559472 /DB_XREF=UI-R-G0-ul-d-03-0-UI.s1 /CLONE=UI-R-G0-ul-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.38056.1 /TIER=ConsEnd /STK=0 /UG=Rn.38056 /UG_TITLE=ESTs AI575096 1396241_at AW252411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252411 /DB_XREF=gi:6596002 /DB_XREF=UI-R-BJ0-adx-b-07-0-UI.s1 /CLONE=UI-R-BJ0-adx-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.40832.1 /TIER=ConsEnd /STK=0 /UG=Rn.40832 /UG_TITLE=ESTs AW252411 1396242_at AW253428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253428 /DB_XREF=gi:6597019 /DB_XREF=UI-R-BJ0-aen-g-07-0-UI.s1 /CLONE=UI-R-BJ0-aen-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.41418.1 /TIER=ConsEnd /STK=0 /UG=Rn.41418 /UG_TITLE=ESTs AW253428 1396243_at AI548947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548947 /DB_XREF=gi:4466435 /DB_XREF=UI-R-C3-tw-d-09-0-UI.s1 /CLONE=UI-R-C3-tw-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.41934.1 /TIER=ConsEnd /STK=0 /UG=Rn.41934 /UG_TITLE=ESTs AI548947 1396244_at AA964859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964859 /DB_XREF=gi:4279733 /DB_XREF=UI-R-C0-gr-a-10-0-UI.s1 /CLONE=UI-R-C0-gr-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.42633.1 /TIER=ConsEnd /STK=0 /UG=Rn.42633 /UG_TITLE=ESTs, Moderately similar to ATPASE INHIBITOR, MITOCHONDRIAL PRECURSOR (R.norvegicus) AA964859 similar to ATPase inhibitory factor 1 RGD1559545 503029 XR_085863 /// XR_086274 0045980 // negative regulation of nucleotide metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation 0004857 // enzyme inhibitor activity // inferred from electronic annotation 1396245_at AI711265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI711265 /DB_XREF=gi:5001041 /DB_XREF=UI-R-AA1-zv-b-04-0-UI.s1 /CLONE=UI-R-AA1-zv-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.44769.1 /TIER=ConsEnd /STK=0 /UG=Rn.44769 /UG_TITLE=ESTs, Highly similar to PURINE NUCLEOSIDE PHOSPHORYLASE (M.musculus) AI711265 nucleoside phosphorylase Np 290029 NM_001106031 0001916 // positive regulation of T cell mediated cytotoxicity // not recorded /// 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // not recorded /// 0006148 // inosine catabolic process // not recorded /// 0006149 // deoxyinosine catabolic process // not recorded /// 0006161 // deoxyguanosine catabolic process // not recorded /// 0006183 // GTP biosynthetic process // not recorded /// 0006738 // nicotinamide riboside catabolic process // not recorded /// 0006955 // immune response // not recorded /// 0009116 // nucleoside metabolic process // inferred from electronic annotation /// 0010332 // response to gamma radiation // not recorded /// 0034356 // NAD biosynthesis via nicotinamide riboside salvage pathway // not recorded /// 0034418 // urate biosynthetic process // not recorded /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0042278 // purine nucleoside metabolic process // inferred from direct assay /// 0042278 // purine nucleoside metabolic process // not recorded /// 0042493 // response to drug // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043101 // purine salvage // traceable author statement /// 0045579 // positive regulation of B cell differentiation // not recorded /// 0045739 // positive regulation of DNA repair // not recorded /// 0046070 // dGTP metabolic process // not recorded /// 0046115 // guanosine catabolic process // not recorded /// 0046638 // positive regulation of alpha-beta T cell differentiation // not recorded /// 0070970 // interleukin-2 secretion // not recorded 0005576 // extracellular region // inferred from direct assay /// 0005622 // intracellular // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation 0001882 // nucleoside binding // not recorded /// 0002060 // purine binding // not recorded /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004731 // purine-nucleoside phosphorylase activity // inferred from direct assay /// 0004731 // purine-nucleoside phosphorylase activity // inferred from electronic annotation /// 0004731 // purine-nucleoside phosphorylase activity // not recorded /// 0008144 // drug binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016763 // transferase activity, transferring pentosyl groups // inferred from electronic annotation /// 0042301 // phosphate binding // not recorded 1396246_at AA965093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965093 /DB_XREF=gi:4279967 /DB_XREF=UI-R-C0-gz-c-03-0-UI.s1 /CLONE=UI-R-C0-gz-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.52346.1 /TIER=ConsEnd /STK=0 /UG=Rn.52346 /UG_TITLE=ESTs AA965093 1396247_at AI453997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI453997 /DB_XREF=gi:4290640 /DB_XREF=UI-R-A0-ag-e-06-0-UI.s1 /CLONE=UI-R-A0-ag-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.54124.1 /TIER=ConsEnd /STK=0 /UG=Rn.54124 /UG_TITLE=ESTs AI453997 1396248_at AI454124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454124 /DB_XREF=gi:4291530 /DB_XREF=UI-R-BT0-pu-b-07-0-UI.s1 /CLONE=UI-R-BT0-pu-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.65392.1 /TIER=ConsEnd /STK=0 /UG=Rn.65392 /UG_TITLE=ESTs, Highly similar to KJHUGU N-acetylglucosamine-6-sulfatase (H.sapiens) AI454124 glucosamine (N-acetyl)-6-sulfatase Gns 299825 NM_001011989 0008152 // metabolic process // inferred from electronic annotation /// 0030203 // glycosaminoglycan metabolic process // inferred from electronic annotation /// 0042340 // keratan sulfate catabolic process // inferred from direct assay 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005539 // glycosaminoglycan binding // inferred from physical interaction /// 0008449 // N-acetylglucosamine-6-sulfatase activity // inferred from direct assay /// 0008449 // N-acetylglucosamine-6-sulfatase activity // inferred from electronic annotation /// 0008484 // sulfuric ester hydrolase activity // not recorded /// 0008484 // sulfuric ester hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0043199 // sulfate binding // inferred from physical interaction 1396249_at AI574783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI574783 /DB_XREF=gi:4544779 /DB_XREF=UI-R-G0-ub-f-11-0-UI.s1 /CLONE=UI-R-G0-ub-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.81299.1 /TIER=ConsEnd /STK=0 /UG=Rn.81299 /UG_TITLE=ESTs AI574783 1396250_at BF558291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558291 /DB_XREF=gi:11668021 /DB_XREF=UI-R-E0-dj-d-11-0-UI.r1 /CLONE=UI-R-E0-dj-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.72712.1 /TIER=ConsEnd /STK=0 /UG=Rn.72712 /UG_TITLE=ESTs BF558291 coronin, actin binding protein 1C Coro1c 501841 NM_001109327 1396251_at BF388318 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388318 /DB_XREF=gi:11373142 /DB_XREF=UI-R-CA1-bbz-h-09-0-UI.s1 /CLONE=UI-R-CA1-bbz-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.51346.1 /TIER=ConsEnd /STK=0 /UG=Rn.51346 /UG_TITLE=ESTs BF388318 1396252_at BE117174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117174 /DB_XREF=gi:8509279 /DB_XREF=UI-R-BS1-aym-g-01-0-UI.s1 /CLONE=UI-R-BS1-aym-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.76203.1 /TIER=ConsEnd /STK=0 /UG=Rn.76203 /UG_TITLE=ESTs BE117174 1396253_at BE116294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116294 /DB_XREF=gi:8508399 /DB_XREF=UI-R-BS1-ayb-f-05-0-UI.s1 /CLONE=UI-R-BS1-ayb-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.52653.1 /TIER=ConsEnd /STK=0 /UG=Rn.52653 /UG_TITLE=ESTs BE116294 1396254_at BF401989 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401989 /DB_XREF=gi:11389964 /DB_XREF=UI-R-CA0-bhv-b-12-0-UI.s1 /CLONE=UI-R-CA0-bhv-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.62123.1 /TIER=ConsEnd /STK=0 /UG=Rn.62123 /UG_TITLE=ESTs BF401989 1396255_at BF420465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420465 /DB_XREF=gi:11408419 /DB_XREF=UI-R-BJ2-bpw-a-03-0-UI.s1 /CLONE=UI-R-BJ2-bpw-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.63710.1 /TIER=ConsEnd /STK=0 /UG=Rn.63710 /UG_TITLE=ESTs, Weakly similar to KF1B_RAT KINESIN-LIKE PROTEIN KIF1B (R.norvegicus) BF420465 kinesin family member 16B Kif16b 311478 NM_001107783 0007018 // microtubule-based movement // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1396256_at AI045614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045614 /DB_XREF=gi:3292433 /DB_XREF=UI-R-C1-ka-c-07-0-UI.s1 /CLONE=UI-R-C1-ka-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.79744.1 /TIER=ConsEnd /STK=0 /UG=Rn.79744 /UG_TITLE=ESTs, Weakly similar to A45973 trichohyalin (H.sapiens) AI045614 intersectin 2 Itsn2 313934 XM_001067254 /// XM_002730131 /// XM_002730132 /// XM_233945 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396257_at BF389756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389756 /DB_XREF=gi:11374592 /DB_XREF=UI-R-BS2-bdo-d-06-0-UI.s1 /CLONE=UI-R-BS2-bdo-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.59532.1 /TIER=ConsEnd /STK=0 /UG=Rn.59532 /UG_TITLE=ESTs BF389756 1396258_at AW921671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921671 /DB_XREF=gi:8087495 /DB_XREF=EST352975 /CLONE=RGIIE81 /FEA=EST /CNT=2 /TID=Rn.74655.1 /TIER=ConsEnd /STK=0 /UG=Rn.74655 /UG_TITLE=ESTs AW921671 1396259_at BE096295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096295 /DB_XREF=gi:8487226 /DB_XREF=UI-R-BU0-ape-d-03-0-UI.s1 /CLONE=UI-R-BU0-ape-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.41880.1 /TIER=ConsEnd /STK=0 /UG=Rn.41880 /UG_TITLE=ESTs BE096295 FRAS1 related extracellular matrix 3 Frem3 307767 NM_001191699 /// XM_001074070 /// XM_226381 0007154 // cell communication // inferred from electronic annotation 0005604 // basement membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 1396260_at BE108054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108054 /DB_XREF=gi:8500159 /DB_XREF=UI-R-CA0-awz-h-05-0-UI.s1 /CLONE=UI-R-CA0-awz-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.51396.1 /TIER=ConsEnd /STK=0 /UG=Rn.51396 /UG_TITLE=ESTs BE108054 1396261_at BF542635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542635 /DB_XREF=gi:11633742 /DB_XREF=UI-R-C2p-sd-g-04-0-UI.r1 /CLONE=UI-R-C2p-sd-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.72493.1 /TIER=ConsEnd /STK=0 /UG=Rn.72493 /UG_TITLE=ESTs BF542635 family with sequence similarity 168, member A Fam168a 361614 NM_001108494 1396262_at BM384211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384211 /DB_XREF=gi:18184264 /DB_XREF=UI-R-DZ0-cks-p-02-0-UI.s1 /CLONE=UI-R-DZ0-cks-p-02-0-UI /FEA=EST /CNT=2 /TID=Rn.38030.1 /TIER=ConsEnd /STK=0 /UG=Rn.38030 /UG_TITLE=ESTs, Highly similar to PBEF_HUMAN PRE-B CELL ENHANCING FACTOR PRECURSO (H.sapiens) BM384211 nicotinamide phosphoribosyltransferase Nampt 297508 NM_177928 0006769 // nicotinamide metabolic process // not recorded /// 0007049 // cell cycle // inferred from expression pattern /// 0007565 // female pregnancy // inferred from expression pattern /// 0008286 // insulin receptor signaling pathway // not recorded /// 0009435 // NAD biosynthetic process // inferred from electronic annotation /// 0009435 // NAD biosynthetic process // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019363 // pyridine nucleotide biosynthetic process // inferred from electronic annotation /// 0019674 // NAD metabolic process // not recorded /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0051770 // positive regulation of nitric-oxide synthase biosynthetic process // not recorded /// 0060612 // adipose tissue development // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0004514 // nicotinate-nucleotide diphosphorylase (carboxylating) activity // inferred from electronic annotation /// 0004516 // nicotinate phosphoribosyltransferase activity // inferred from electronic annotation /// 0005125 // cytokine activity // inferred from direct assay /// 0008144 // drug binding // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0047280 // nicotinamide phosphoribosyltransferase activity // inferred from direct assay /// 0047280 // nicotinamide phosphoribosyltransferase activity // not recorded /// 0047280 // nicotinamide phosphoribosyltransferase activity // inferred from electronic annotation 1396263_at BI301147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301147 /DB_XREF=gi:14977427 /DB_XREF=UI-R-DN0-cit-l-11-0-UI.s1 /CLONE=UI-R-DN0-cit-l-11-0-UI /FEA=EST /CNT=2 /TID=Rn.27210.1 /TIER=ConsEnd /STK=0 /UG=Rn.27210 /UG_TITLE=ESTs BI301147 1396264_at BF397752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397752 /DB_XREF=gi:11382736 /DB_XREF=UI-R-BS2-bee-b-11-0-UI.s1 /CLONE=UI-R-BS2-bee-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.63881.1 /TIER=ConsEnd /STK=0 /UG=Rn.63881 /UG_TITLE=ESTs, Highly similar to 2118330A cap-binding protein (H.sapiens) BF397752 1396265_at BE097728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097728 /DB_XREF=gi:8488664 /DB_XREF=UI-R-BO1-aqb-b-03-0-UI.s1 /CLONE=UI-R-BO1-aqb-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.49677.1 /TIER=ConsEnd /STK=0 /UG=Rn.49677 /UG_TITLE=ESTs BE097728 Similar to Ab1-133 RGD1306344 296384 NM_001047860 1396266_at AI237137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237137 /DB_XREF=gi:3830643 /DB_XREF=EST233699 /CLONE=ROVDP10 /FEA=EST /CNT=2 /TID=Rn.65170.1 /TIER=ConsEnd /STK=0 /UG=Rn.65170 /UG_TITLE=ESTs AI237137 Protein phosphatase 1F (PP2C domain containing) Ppm1f 287931 NM_175755 0006470 // protein dephosphorylation // traceable author statement /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // traceable author statement /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1396267_at N55607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:N55607 /DB_XREF=gi:1778911 /DB_XREF=ESTG43 /CLONE=G4 /FEA=EST /CNT=2 /TID=Rn.74875.1 /TIER=ConsEnd /STK=0 /UG=Rn.74875 /UG_TITLE=ESTs N55607 P21 protein (Cdc42/Rac)-activated kinase 2 Pak2 29432 NM_053306 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1396268_at BF523991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523991 /DB_XREF=gi:11631958 /DB_XREF=UI-R-Y0-vi-e-06-0-UI.r1 /CLONE=UI-R-Y0-vi-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.49254.1 /TIER=ConsEnd /STK=0 /UG=Rn.49254 /UG_TITLE=ESTs, Weakly similar to SP10_MOUSE NUCLEAR AUTOANTIGEN SP-100 (SPECKLED 100 KDA) (NUCLEAR DOT-ASSOCIATED SP100 PROTEIN) (M.musculus) BF523991 SP110 nuclear body protein Sp110 301570 NM_001034137 0006350 // transcription // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // not recorded /// 0009617 // response to bacterium // not recorded /// 0045087 // innate immune response // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1396269_at BI297876 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297876 /DB_XREF=gi:14974156 /DB_XREF=UI-R-CV2-chb-f-10-0-UI.s1 /CLONE=UI-R-CV2-chb-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.66927.1 /TIER=ConsEnd /STK=0 /UG=Rn.66927 /UG_TITLE=ESTs BI297876 1396270_at BI290209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290209 /DB_XREF=gi:14948570 /DB_XREF=UI-R-DK0-cft-e-04-0-UI.s1 /CLONE=UI-R-DK0-cft-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.56533.1 /TIER=ConsEnd /STK=0 /UG=Rn.56533 /UG_TITLE=ESTs BI290209 1396271_at BG378842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378842 /DB_XREF=gi:13303314 /DB_XREF=UI-R-CV1-bvt-e-05-0-UI.s1 /CLONE=UI-R-CV1-bvt-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.66606.1 /TIER=ConsEnd /STK=0 /UG=Rn.66606 /UG_TITLE=ESTs BG378842 1396272_at AI548503 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548503 /DB_XREF=gi:4465991 /DB_XREF=UI-R-C3-to-b-05-0-UI.s1 /CLONE=UI-R-C3-to-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.41838.1 /TIER=ConsEnd /STK=0 /UG=Rn.41838 /UG_TITLE=ESTs AI548503 Similar to solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 LOC680558 680558 XM_001057715 1396273_at AW530436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530436 /DB_XREF=gi:7172850 /DB_XREF=UI-R-C4-akx-a-05-0-UI.s1 /CLONE=UI-R-C4-akx-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.47449.1 /TIER=ConsEnd /STK=0 /UG=Rn.47449 /UG_TITLE=ESTs AW530436 1396274_at AI111884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111884 /DB_XREF=gi:3511833 /DB_XREF=UI-R-A1-ed-a-06-0-UI.s1 /CLONE=UI-R-A1-ed-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.26668.1 /TIER=ConsEnd /STK=0 /UG=Rn.26668 /UG_TITLE=ESTs AI111884 similar to IQ motif containing C LOC682431 682431 XR_085846 1396275_at BE113872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113872 /DB_XREF=gi:8505977 /DB_XREF=UI-R-CA0-axe-d-07-0-UI.s1 /CLONE=UI-R-CA0-axe-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.52262.1 /TIER=ConsEnd /STK=0 /UG=Rn.52262 /UG_TITLE=ESTs BE113872 dual specificity phosphatase 18 Dusp18 305477 NM_001013128 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0035335 // peptidyl-tyrosine dephosphorylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017017 // MAP kinase tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation 1396276_at BG662898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG662898 /DB_XREF=gi:13884820 /DB_XREF=DRA05A06 /CLONE=DRA05A06 /FEA=EST /CNT=2 /TID=Rn.59568.1 /TIER=ConsEnd /STK=0 /UG=Rn.59568 /UG_TITLE=ESTs BG662898 1396277_at AW251627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251627 /DB_XREF=gi:6595218 /DB_XREF=UI-R-BJ0-adp-a-05-0-UI.s1 /CLONE=UI-R-BJ0-adp-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.65007.1 /TIER=ConsEnd /STK=0 /UG=Rn.65007 /UG_TITLE=ESTs AW251627 kelch-like 21 (Drosophila) Klhl21 313743 NM_001107996 0000910 // cytokinesis // not recorded /// 0000910 // cytokinesis // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation /// 0051322 // anaphase // not recorded /// 0051322 // anaphase // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005827 // polar microtubule // not recorded /// 0005827 // polar microtubule // inferred from sequence or structural similarity /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0031463 // Cul3-RING ubiquitin ligase complex // not recorded /// 0031463 // Cul3-RING ubiquitin ligase complex // inferred from sequence or structural similarity 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation 1396278_at BF545212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545212 /DB_XREF=gi:11636319 /DB_XREF=UI-R-C0-in-g-03-0-UI.r1 /CLONE=UI-R-C0-in-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.67816.1 /TIER=ConsEnd /STK=0 /UG=Rn.67816 /UG_TITLE=ESTs, Weakly similar to SNXB_HUMAN SORTING NEXIN 11 (H.sapiens) BF545212 sorting nexin 11 Snx11 303493 NM_001012012 0007154 // cell communication // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred from electronic annotation 1396279_at BG663051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663051 /DB_XREF=gi:13884973 /DB_XREF=DRA07F02 /CLONE=DRA07F02 /FEA=EST /CNT=2 /TID=Rn.34290.1 /TIER=ConsEnd /STK=0 /UG=Rn.34290 /UG_TITLE=ESTs, Moderately similar to T08667 hypothetical protein DKFZp547O0510.1 (H.sapiens) BG663051 ATPase, H+ transporting, lysosomal accessory protein 2 Atp6ap2 302526 XM_001060853 /// XM_217592 0002003 // angiotensin maturation // inferred from electronic annotation /// 0002003 // angiotensin maturation // not recorded /// 0032914 // positive regulation of transforming growth factor-beta1 production // inferred from electronic annotation /// 0032914 // positive regulation of transforming growth factor-beta1 production // not recorded /// 0043408 // regulation of MAPKKK cascade // inferred from electronic annotation /// 0043408 // regulation of MAPKKK cascade // not recorded 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396280_at BI277872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277872 /DB_XREF=gi:14924167 /DB_XREF=UI-R-CX0-bxk-e-09-0-UI.s1 /CLONE=UI-R-CX0-bxk-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.35444.1 /TIER=ConsEnd /STK=0 /UG=Rn.35444 /UG_TITLE=ESTs BI277872 G patch domain and KOW motifs Gpkow 679890 NM_001109381 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation 1396281_at BI274269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274269 /DB_XREF=gi:14885035 /DB_XREF=UI-R-CW0-bwg-h-10-0-UI.s1 /CLONE=UI-R-CW0-bwg-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.42040.1 /TIER=ConsEnd /STK=0 /UG=Rn.42040 /UG_TITLE=ESTs BI274269 1396282_at BG664056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664056 /DB_XREF=gi:13885978 /DB_XREF=DRAACD11 /CLONE=DRAACD11 /FEA=EST /CNT=2 /TID=Rn.43815.1 /TIER=ConsEnd /STK=0 /UG=Rn.43815 /UG_TITLE=ESTs BG664056 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9 Ndufa9 362440 NM_001100752 0006810 // transport // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0022900 // electron transport chain // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005747 // mitochondrial respiratory chain complex I // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded /// 0031966 // mitochondrial membrane // not recorded /// 0031966 // mitochondrial membrane // inferred from electronic annotation /// 0070469 // respiratory chain // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0003954 // NADH dehydrogenase activity // inferred from electronic annotation /// 0003954 // NADH dehydrogenase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396283_at BI293995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293995 /DB_XREF=gi:14956027 /DB_XREF=UI-R-DK0-cdy-a-11-0-UI.s1 /CLONE=UI-R-DK0-cdy-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.45527.1 /TIER=ConsEnd /STK=0 /UG=Rn.45527 /UG_TITLE=ESTs BI293995 1396284_at BG376703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376703 /DB_XREF=gi:13301175 /DB_XREF=UI-R-CU0-buq-h-12-0-UI.s1 /CLONE=UI-R-CU0-buq-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.46776.1 /TIER=ConsEnd /STK=0 /UG=Rn.46776 /UG_TITLE=ESTs BG376703 Hypothetical protein LOC690785 LOC690785 690785 XM_001075615 1396285_at BE101384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101384 /DB_XREF=gi:8493298 /DB_XREF=UI-R-BJ1-aud-d-07-0-UI.s1 /CLONE=UI-R-BJ1-aud-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.50055.1 /TIER=ConsEnd /STK=0 /UG=Rn.50055 /UG_TITLE=ESTs BE101384 1396286_at BG372956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372956 /DB_XREF=gi:13269493 /DB_XREF=UI-R-CV1-bru-h-05-0-UI.s1 /CLONE=UI-R-CV1-bru-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.50257.1 /TIER=ConsEnd /STK=0 /UG=Rn.50257 /UG_TITLE=ESTs BG372956 1396287_at BI283465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283465 /DB_XREF=gi:14935234 /DB_XREF=UI-R-DE0-cab-f-02-0-UI.s1 /CLONE=UI-R-DE0-cab-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.53091.1 /TIER=ConsEnd /STK=0 /UG=Rn.53091 /UG_TITLE=ESTs BI283465 1396288_s_at BI273954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI273954 /DB_XREF=gi:14884418 /DB_XREF=UI-R-CW0-bwa-h-09-0-UI.s1 /CLONE=UI-R-CW0-bwa-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.54282.1 /TIER=ConsEnd /STK=0 /UG=Rn.54282 /UG_TITLE=ESTs BI273954 1396289_at BI283720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283720 /DB_XREF=gi:14935741 /DB_XREF=UI-R-CW0s-ccg-h-12-0-UI.s1 /CLONE=UI-R-CW0s-ccg-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.56735.1 /TIER=ConsEnd /STK=0 /UG=Rn.56735 /UG_TITLE=ESTs, Weakly similar to APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR (R.norvegicus) BI283720 MAM domain containing glycosylphosphatidylinositol anchor 1 Mdga1 309659 NM_001107618 0001764 // neuron migration // inferred from sequence or structural similarity /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0021527 // spinal cord association neuron differentiation // inferred from expression pattern /// 0030154 // cell differentiation // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0046658 // anchored to plasma membrane // inferred from direct assay 1396290_at BG380538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380538 /DB_XREF=gi:13305010 /DB_XREF=UI-R-CT0-bty-e-05-0-UI.s1 /CLONE=UI-R-CT0-bty-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.56899.1 /TIER=ConsEnd /STK=0 /UG=Rn.56899 /UG_TITLE=ESTs BG380538 1396291_at BI290733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290733 /DB_XREF=gi:14949582 /DB_XREF=UI-R-DK0-cfy-g-05-0-UI.s1 /CLONE=UI-R-DK0-cfy-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.57488.1 /TIER=ConsEnd /STK=0 /UG=Rn.57488 /UG_TITLE=ESTs BI290733 1396292_at BG379069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379069 /DB_XREF=gi:13303541 /DB_XREF=UI-R-BT1-bnh-e-11-0-UI.s1 /CLONE=UI-R-BT1-bnh-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.60053.1 /TIER=ConsEnd /STK=0 /UG=Rn.60053 /UG_TITLE=ESTs BG379069 1396293_at BI294274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294274 /DB_XREF=gi:14956579 /DB_XREF=UI-R-DK0-cea-f-12-0-UI.s1 /CLONE=UI-R-DK0-cea-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.63194.1 /TIER=ConsEnd /STK=0 /UG=Rn.63194 /UG_TITLE=ESTs BI294274 1396294_at BG379104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379104 /DB_XREF=gi:13303576 /DB_XREF=UI-R-BT1-bni-c-06-0-UI.s1 /CLONE=UI-R-BT1-bni-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.63330.1 /TIER=ConsEnd /STK=0 /UG=Rn.63330 /UG_TITLE=ESTs BG379104 1396295_at BG371608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371608 /DB_XREF=gi:13268145 /DB_XREF=UI-R-CW0-bvx-e-05-0-UI.s1 /CLONE=UI-R-CW0-bvx-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.63431.1 /TIER=ConsEnd /STK=0 /UG=Rn.63431 /UG_TITLE=ESTs BG371608 Hypothetical protein LOC685576 LOC685576 685576 XM_001064390 /// XM_001068832 1396296_at BG374199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374199 /DB_XREF=gi:13298671 /DB_XREF=UI-R-CV1-bsm-e-09-0-UI.s1 /CLONE=UI-R-CV1-bsm-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.66197.1 /TIER=ConsEnd /STK=0 /UG=Rn.66197 /UG_TITLE=ESTs BG374199 1396297_at BG374359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374359 /DB_XREF=gi:13298831 /DB_XREF=UI-R-CV1-bso-d-10-0-UI.s1 /CLONE=UI-R-CV1-bso-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.66210.1 /TIER=ConsEnd /STK=0 /UG=Rn.66210 /UG_TITLE=ESTs BG374359 1396298_at BI298052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298052 /DB_XREF=gi:14974332 /DB_XREF=UI-R-CV2-che-g-11-0-UI.s1 /CLONE=UI-R-CV2-che-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.67037.1 /TIER=ConsEnd /STK=0 /UG=Rn.67037 /UG_TITLE=ESTs BI298052 1396299_at BI295661 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295661 /DB_XREF=gi:14959333 /DB_XREF=UI-R-DK0-ceu-b-06-0-UI.s1 /CLONE=UI-R-DK0-ceu-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.71043.1 /TIER=ConsEnd /STK=0 /UG=Rn.71043 /UG_TITLE=ESTs, Weakly similar to EPHRIN TYPE-A RECEPTOR 2 PRECURSOR (M.musculus) BI295661 1396300_at BI277442 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277442 /DB_XREF=gi:14923325 /DB_XREF=UI-R-CY0-bxq-a-11-0-UI.s1 /CLONE=UI-R-CY0-bxq-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.77653.1 /TIER=ConsEnd /STK=0 /UG=Rn.77653 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BI277442 arylformamidase Afmid 688283 NM_001111366 0008152 // metabolic process // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation 1396301_x_at BI277442 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI277442 /DB_XREF=gi:14923325 /DB_XREF=UI-R-CY0-bxq-a-11-0-UI.s1 /CLONE=UI-R-CY0-bxq-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.77653.1 /TIER=ConsEnd /STK=0 /UG=Rn.77653 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BI277442 arylformamidase Afmid 688283 NM_001111366 0008152 // metabolic process // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation 1396302_at BM389727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389727 /DB_XREF=gi:18189780 /DB_XREF=UI-R-CN1-cjp-i-10-0-UI.s1 /CLONE=UI-R-CN1-cjp-i-10-0-UI /FEA=EST /CNT=2 /TID=Rn.79053.1 /TIER=ConsEnd /STK=0 /UG=Rn.79053 /UG_TITLE=ESTs BM389727 1396303_at BI291790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291790 /DB_XREF=gi:14951676 /DB_XREF=UI-R-DN0-cit-d-12-0-UI.s1 /CLONE=UI-R-DN0-cit-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.79269.1 /TIER=ConsEnd /STK=0 /UG=Rn.79269 /UG_TITLE=ESTs BI291790 1396304_at BI292055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292055 /DB_XREF=gi:14952184 /DB_XREF=UI-R-DN0-ciu-i-24-0-UI.s1 /CLONE=UI-R-DN0-ciu-i-24-0-UI /FEA=EST /CNT=2 /TID=Rn.79292.1 /TIER=ConsEnd /STK=0 /UG=Rn.79292 /UG_TITLE=ESTs BI292055 1396305_at BI274350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274350 /DB_XREF=gi:14885198 /DB_XREF=UI-R-CW0-bwh-h-05-0-UI.s1 /CLONE=UI-R-CW0-bwh-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.79966.1 /TIER=ConsEnd /STK=0 /UG=Rn.79966 /UG_TITLE=ESTs BI274350 1396306_at AA943137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943137 /DB_XREF=gi:3103053 /DB_XREF=EST198636 /CLONE=RBRAF50 /FEA=EST /CNT=2 /TID=Rn.32503.1 /TIER=ConsEnd /STK=0 /UG=Rn.32503 /UG_TITLE=ESTs AA943137 1396307_at BF522907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522907 /DB_XREF=gi:11630874 /DB_XREF=UI-R-Y0-acp-g-03-0-UI.r1 /CLONE=UI-R-Y0-acp-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.72411.1 /TIER=ConsEnd /STK=0 /UG=Rn.72411 /UG_TITLE=ESTs BF522907 1396308_at AI763614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763614 /DB_XREF=gi:5209549 /DB_XREF=UI-R-Y0-acj-a-05-0-UI.s1 /CLONE=UI-R-Y0-acj-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.38849.1 /TIER=ConsEnd /STK=0 /UG=Rn.38849 /UG_TITLE=ESTs AI763614 hypothetical protein LOC688126 LOC688126 688126 XM_001081228 0005576 // extracellular region // inferred from electronic annotation 1396309_at BI292839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292839 /DB_XREF=gi:14953747 /DB_XREF=UI-R-DO0-cix-d-05-0-UI.s1 /CLONE=UI-R-DO0-cix-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.46324.1 /TIER=ConsEnd /STK=0 /UG=Rn.46324 /UG_TITLE=ESTs BI292839 TBC1 domain family, member 19 Tbc1d19 289657 NM_001106008 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1396310_at BF545380 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545380 /DB_XREF=gi:11636487 /DB_XREF=UI-R-C0-jf-b-09-0-UI.r1 /CLONE=UI-R-C0-jf-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.63866.1 /TIER=ConsEnd /STK=0 /UG=Rn.63866 /UG_TITLE=ESTs BF545380 1396311_at BF390394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390394 /DB_XREF=gi:11375240 /DB_XREF=UI-R-CA1-bcg-e-03-0-UI.s1 /CLONE=UI-R-CA1-bcg-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.62541.1 /TIER=ConsEnd /STK=0 /UG=Rn.62541 /UG_TITLE=ESTs BF390394 1396312_at BF388765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388765 /DB_XREF=gi:11373589 /DB_XREF=UI-R-BS2-bde-c-08-0-UI.s1 /CLONE=UI-R-BS2-bde-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.52166.1 /TIER=ConsEnd /STK=0 /UG=Rn.52166 /UG_TITLE=ESTs BF388765 1396313_at AI111750 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111750 /DB_XREF=gi:3511699 /DB_XREF=UI-R-Y0-me-d-02-0-UI.s1 /CLONE=UI-R-Y0-me-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.26625.1 /TIER=ConsEnd /STK=0 /UG=Rn.26625 /UG_TITLE=ESTs AI111750 1396314_at AI137838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137838 /DB_XREF=gi:3638615 /DB_XREF=UI-R-C0-ih-b-08-0-UI.s1 /CLONE=UI-R-C0-ih-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.27519.1 /TIER=ConsEnd /STK=0 /UG=Rn.27519 /UG_TITLE=ESTs AI137838 1396315_at BF408941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408941 /DB_XREF=gi:11396916 /DB_XREF=UI-R-BJ2-bpn-c-01-0-UI.s1 /CLONE=UI-R-BJ2-bpn-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.51448.1 /TIER=ConsEnd /STK=0 /UG=Rn.51448 /UG_TITLE=ESTs BF408941 coiled-coil domain containing 112 Ccdc112 498858 NM_001109124 1396316_at AW527987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527987 /DB_XREF=gi:7170401 /DB_XREF=UI-R-BT1-akg-d-08-0-UI.s1 /CLONE=UI-R-BT1-akg-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.46729.1 /TIER=ConsEnd /STK=0 /UG=Rn.46729 /UG_TITLE=ESTs AW527987 1396317_at AI764350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764350 /DB_XREF=gi:5210285 /DB_XREF=UI-R-Y0-acx-h-01-0-UI.s1 /CLONE=UI-R-Y0-acx-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.41962.1 /TIER=ConsEnd /STK=0 /UG=Rn.41962 /UG_TITLE=ESTs AI764350 cell cycle progression 1 Ccpg1 363098 NM_001108770 1396318_at BE112693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112693 /DB_XREF=gi:8504798 /DB_XREF=UI-R-BJ1-avj-g-04-0-UI.s1 /CLONE=UI-R-BJ1-avj-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.51102.1 /TIER=ConsEnd /STK=0 /UG=Rn.51102 /UG_TITLE=ESTs BE112693 1396319_at AI717125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717125 /DB_XREF=gi:5034381 /DB_XREF=UI-R-Y0-abe-c-10-0-UI.s1 /CLONE=UI-R-Y0-abe-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.41181.1 /TIER=ConsEnd /STK=0 /UG=Rn.41181 /UG_TITLE=ESTs, Moderately similar to T00257 hypothetical protein KIAA0476 (H.sapiens) AI717125 DENN/MADD domain containing 4B Dennd4b 361987 XM_002725974 /// XM_342287 1396320_at BF396773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396773 /DB_XREF=gi:11381754 /DB_XREF=UI-R-BS2-bev-a-02-0-UI.s1 /CLONE=UI-R-BS2-bev-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.49781.1 /TIER=ConsEnd /STK=0 /UG=Rn.49781 /UG_TITLE=ESTs BF396773 Cdc2-related kinase, arginine/serine-rich Crkrs 192350 NM_001033867 /// NM_138916 0006468 // protein phosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1396321_at BE120690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120690 /DB_XREF=gi:8512795 /DB_XREF=UI-R-CA0-bay-d-08-0-UI.s1 /CLONE=UI-R-CA0-bay-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.53637.1 /TIER=ConsEnd /STK=0 /UG=Rn.53637 /UG_TITLE=ESTs BE120690 1396322_at BF404405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404405 /DB_XREF=gi:11392380 /DB_XREF=UI-R-CA1-bie-h-03-0-UI.s1 /CLONE=UI-R-CA1-bie-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.60487.1 /TIER=ConsEnd /STK=0 /UG=Rn.60487 /UG_TITLE=ESTs, Weakly similar to T29922 hypothetical protein T03G11.3 - Caenorhabditis elegans (C.elegans) BF404405 rCG57268-like LOC100364796 100364796 XM_002725447 1396323_at AI709444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI709444 /DB_XREF=gi:4999220 /DB_XREF=UI-R-C3-ss-d-02-0-UI.s1 /CLONE=UI-R-C3-ss-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.40606.1 /TIER=ConsEnd /STK=0 /UG=Rn.40606 /UG_TITLE=ESTs AI709444 similar to Protein C10orf11 homolog LOC681383 681383 NM_001109441 1396324_at BF390565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390565 /DB_XREF=gi:11375411 /DB_XREF=UI-R-CA1-bcc-e-10-0-UI.s1 /CLONE=UI-R-CA1-bcc-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.61226.1 /TIER=ConsEnd /STK=0 /UG=Rn.61226 /UG_TITLE=ESTs BF390565 1396325_at BF413179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413179 /DB_XREF=gi:11401168 /DB_XREF=UI-R-BT1-bnx-f-07-0-UI.s1 /CLONE=UI-R-BT1-bnx-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.62272.1 /TIER=ConsEnd /STK=0 /UG=Rn.62272 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) BF413179 zinc finger protein 819 Zfp819 308561 NM_001014017 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1396326_at BM390873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390873 /DB_XREF=gi:18190926 /DB_XREF=UI-R-CN1-cjp-c-19-0-UI.s1 /CLONE=UI-R-CN1-cjp-c-19-0-UI /FEA=EST /CNT=2 /TID=Rn.51145.1 /TIER=ConsEnd /STK=0 /UG=Rn.51145 /UG_TITLE=ESTs BM390873 programmed cell death 11 Pdcd11 309458 NM_001107604 0006396 // RNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded 1396327_at BG374493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374493 /DB_XREF=gi:13298965 /DB_XREF=UI-R-CV1-bsr-a-10-0-UI.s1 /CLONE=UI-R-CV1-bsr-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.34638.1 /TIER=ConsEnd /STK=0 /UG=Rn.34638 /UG_TITLE=ESTs, Moderately similar to CPJ3 RAT CYTOCHROME P450 2J3 (R.norvegicus) BG374493 cytochrome P450, family 2, subfamily j, polypeptide 10 Cyp2j10 313373 NM_001134980 0055114 // oxidation reduction // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1396328_at BF390586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390586 /DB_XREF=gi:11375433 /DB_XREF=UI-R-CA1-bcc-g-08-0-UI.s1 /CLONE=UI-R-CA1-bcc-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.41897.1 /TIER=ConsEnd /STK=0 /UG=Rn.41897 /UG_TITLE=ESTs BF390586 1396329_at BF403992 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403992 /DB_XREF=gi:11391967 /DB_XREF=UI-R-CA1-bjd-c-20-0-UI.s1 /CLONE=UI-R-CA1-bjd-c-20-0-UI /FEA=EST /CNT=2 /TID=Rn.57930.1 /TIER=ConsEnd /STK=0 /UG=Rn.57930 /UG_TITLE=ESTs BF403992 1396330_at AW526516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526516 /DB_XREF=gi:7168895 /DB_XREF=UI-R-BO1-aix-e-11-0-UI.s1 /CLONE=UI-R-BO1-aix-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.46207.1 /TIER=ConsEnd /STK=0 /UG=Rn.46207 /UG_TITLE=ESTs AW526516 1396331_at BF387074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387074 /DB_XREF=gi:11371898 /DB_XREF=UI-R-CA1-bbp-h-09-0-UI.s1 /CLONE=UI-R-CA1-bbp-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.47666.1 /TIER=ConsEnd /STK=0 /UG=Rn.47666 /UG_TITLE=ESTs BF387074 1396332_at BE109907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109907 /DB_XREF=gi:8502012 /DB_XREF=UI-R-CA0-axi-g-06-0-UI.s1 /CLONE=UI-R-CA0-axi-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.51767.1 /TIER=ConsEnd /STK=0 /UG=Rn.51767 /UG_TITLE=ESTs BE109907 1396333_at AW520959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520959 /DB_XREF=gi:7163337 /DB_XREF=UI-R-BO0-agq-d-07-0-UI.s1 /CLONE=UI-R-BO0-agq-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.45077.1 /TIER=ConsEnd /STK=0 /UG=Rn.45077 /UG_TITLE=ESTs AW520959 1396334_at BF415860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415860 /DB_XREF=gi:11403849 /DB_XREF=UI-R-CA1-bkf-g-09-0-UI.s1 /CLONE=UI-R-CA1-bkf-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.51419.1 /TIER=ConsEnd /STK=0 /UG=Rn.51419 /UG_TITLE=ESTs BF415860 1396335_at BF405922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405922 /DB_XREF=gi:11393897 /DB_XREF=UI-R-CA1-bii-f-02-0-UI.s1 /CLONE=UI-R-CA1-bii-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.62583.1 /TIER=ConsEnd /STK=0 /UG=Rn.62583 /UG_TITLE=ESTs BF405922 1396336_at AI112744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112744 /DB_XREF=gi:3512693 /DB_XREF=UI-R-Y0-mj-c-04-0-UI.s1 /CLONE=UI-R-Y0-mj-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.26831.1 /TIER=ConsEnd /STK=0 /UG=Rn.26831 /UG_TITLE=ESTs AI112744 1396337_at AW529811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529811 /DB_XREF=gi:7172225 /DB_XREF=UI-R-BU0-amt-f-01-0-UI.s1 /CLONE=UI-R-BU0-amt-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.47304.1 /TIER=ConsEnd /STK=0 /UG=Rn.47304 /UG_TITLE=ESTs AW529811 1396338_at BF416353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416353 /DB_XREF=gi:11404342 /DB_XREF=UI-R-CA0-bkj-e-09-0-UI.s1 /CLONE=UI-R-CA0-bkj-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.50249.1 /TIER=ConsEnd /STK=0 /UG=Rn.50249 /UG_TITLE=ESTs BF416353 1396339_at BF411257 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411257 /DB_XREF=gi:11399232 /DB_XREF=UI-R-BT1-bmn-a-05-0-UI.s1 /CLONE=UI-R-BT1-bmn-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.50757.1 /TIER=ConsEnd /STK=0 /UG=Rn.50757 /UG_TITLE=ESTs BF411257 1396340_at BF417769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417769 /DB_XREF=gi:11405758 /DB_XREF=UI-R-CN0-blx-a-01-0-UI.s1 /CLONE=UI-R-CN0-blx-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.51444.1 /TIER=ConsEnd /STK=0 /UG=Rn.51444 /UG_TITLE=ESTs BF417769 1396341_at BI276792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276792 /DB_XREF=gi:14922043 /DB_XREF=UI-R-CX0-bxl-e-09-0-UI.s1 /CLONE=UI-R-CX0-bxl-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.54344.1 /TIER=ConsEnd /STK=0 /UG=Rn.54344 /UG_TITLE=ESTs, Weakly similar to PT56_YEAST RIBOSE METHYLTRANSFERASE PET56 (MITOCHONDRIAL LARGE RIBOSOMAL RNA RIBOSE METHYLASE) (21S RRNA (GM2251) 2O-METHYLTRANSFERASE) (S.cerevisiae) BI276792 Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) Mrm1 363661 NM_001108832 0006396 // RNA processing // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008173 // RNA methyltransferase activity // inferred from electronic annotation 1396342_at BF392211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392211 /DB_XREF=gi:11377068 /DB_XREF=UI-R-CA0-bff-e-02-0-UI.s1 /CLONE=UI-R-CA0-bff-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.57771.1 /TIER=ConsEnd /STK=0 /UG=Rn.57771 /UG_TITLE=ESTs BF392211 1396343_at BI293181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293181 /DB_XREF=gi:14954435 /DB_XREF=UI-R-DK0-cdk-f-10-0-UI.s1 /CLONE=UI-R-DK0-cdk-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.63235.1 /TIER=ConsEnd /STK=0 /UG=Rn.63235 /UG_TITLE=ESTs BI293181 1396344_at AI548117 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548117 /DB_XREF=gi:4465605 /DB_XREF=UI-R-C3-sm-e-06-0-UI.s1 /CLONE=UI-R-C3-sm-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.41762.1 /TIER=ConsEnd /STK=0 /UG=Rn.41762 /UG_TITLE=ESTs AI548117 1396345_at BF403604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403604 /DB_XREF=gi:11391579 /DB_XREF=UI-R-CA1-bjd-j-12-0-UI.s1 /CLONE=UI-R-CA1-bjd-j-12-0-UI /FEA=EST /CNT=2 /TID=Rn.46205.1 /TIER=ConsEnd /STK=0 /UG=Rn.46205 /UG_TITLE=ESTs BF403604 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) Galnt1 79214 NM_024373 0006493 // protein O-linked glycosylation // not recorded /// 0006493 // protein O-linked glycosylation // traceable author statement /// 0006493 // protein O-linked glycosylation // inferred from electronic annotation /// 0018242 // protein O-linked glycosylation via serine // inferred from electronic annotation /// 0018242 // protein O-linked glycosylation via serine // not recorded /// 0018243 // protein O-linked glycosylation via threonine // inferred from electronic annotation /// 0018243 // protein O-linked glycosylation via threonine // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from mutant phenotype /// 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // not recorded /// 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0030145 // manganese ion binding // not recorded 1396346_at AW524883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524883 /DB_XREF=gi:7167268 /DB_XREF=UI-R-BO0-aid-d-06-0-UI.s1 /CLONE=UI-R-BO0-aid-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.46695.1 /TIER=ConsEnd /STK=0 /UG=Rn.46695 /UG_TITLE=ESTs AW524883 Neurofibromin 2 (merlin) Nf2 25744 NM_013193 0001707 // mesoderm formation // not recorded /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0007398 // ectoderm development // not recorded /// 0007398 // ectoderm development // inferred from electronic annotation /// 0008156 // negative regulation of DNA replication // not recorded /// 0008156 // negative regulation of DNA replication // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0014010 // Schwann cell proliferation // not recorded /// 0014010 // Schwann cell proliferation // inferred from electronic annotation /// 0022408 // negative regulation of cell-cell adhesion // not recorded /// 0022408 // negative regulation of cell-cell adhesion // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from direct assay /// 0030308 // negative regulation of cell growth // non-traceable author statement /// 0035330 // regulation of hippo signaling cascade // not recorded /// 0035330 // regulation of hippo signaling cascade // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042518 // negative regulation of tyrosine phosphorylation of Stat3 protein // not recorded /// 0042518 // negative regulation of tyrosine phosphorylation of Stat3 protein // inferred from electronic annotation /// 0042524 // negative regulation of tyrosine phosphorylation of Stat5 protein // not recorded /// 0042524 // negative regulation of tyrosine phosphorylation of Stat5 protein // inferred from electronic annotation /// 0043409 // negative regulation of MAPKKK cascade // not recorded /// 0043409 // negative regulation of MAPKKK cascade // inferred from electronic annotation /// 0045216 // cell-cell junction organization // not recorded /// 0045216 // cell-cell junction organization // inferred from electronic annotation /// 0046426 // negative regulation of JAK-STAT cascade // not recorded /// 0046426 // negative regulation of JAK-STAT cascade // inferred from electronic annotation /// 0051496 // positive regulation of stress fiber assembly // not recorded /// 0051496 // positive regulation of stress fiber assembly // inferred from electronic annotation /// 0070306 // lens fiber cell differentiation // not recorded /// 0070306 // lens fiber cell differentiation // inferred from electronic annotation 0001726 // ruffle // not recorded /// 0001726 // ruffle // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005769 // early endosome // not recorded /// 0005769 // early endosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic to membrane // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030175 // filopodium // not recorded /// 0030175 // filopodium // inferred from electronic annotation /// 0032154 // cleavage furrow // not recorded /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0045202 // synapse // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005178 // integrin binding // inferred from physical interaction /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from physical interaction /// 0008092 // cytoskeletal protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from physical interaction 1396347_at BF395640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395640 /DB_XREF=gi:11380610 /DB_XREF=UI-R-CM0-bjp-d-09-0-UI.s1 /CLONE=UI-R-CM0-bjp-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.47103.1 /TIER=ConsEnd /STK=0 /UG=Rn.47103 /UG_TITLE=ESTs BF395640 RGD1565926 RGD1565926 361629 XM_346994 1396348_at BI287017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287017 /DB_XREF=gi:14942214 /DB_XREF=UI-R-CT0s-cax-a-01-0-UI.s1 /CLONE=UI-R-CT0s-cax-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.47169.1 /TIER=ConsEnd /STK=0 /UG=Rn.47169 /UG_TITLE=ESTs BI287017 1396349_at BE099657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099657 /DB_XREF=gi:8491536 /DB_XREF=UI-R-BJ1-atp-g-12-0-UI.s1 /CLONE=UI-R-BJ1-atp-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.48560.1 /TIER=ConsEnd /STK=0 /UG=Rn.48560 /UG_TITLE=ESTs, Weakly similar to T14355 protein-tyrosine-phosphatase (R.norvegicus) BE099657 1396350_at BE097744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097744 /DB_XREF=gi:8488675 /DB_XREF=UI-R-BO1-aqb-c-04-0-UI.s1 /CLONE=UI-R-BO1-aqb-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.49682.1 /TIER=ConsEnd /STK=0 /UG=Rn.49682 /UG_TITLE=ESTs BE097744 1396351_at BF411876 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411876 /DB_XREF=gi:11399865 /DB_XREF=UI-R-BT1-bmr-d-06-0-UI.s1 /CLONE=UI-R-BT1-bmr-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.49715.1 /TIER=ConsEnd /STK=0 /UG=Rn.49715 /UG_TITLE=ESTs BF411876 1396352_at BF414264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414264 /DB_XREF=gi:11402253 /DB_XREF=UI-R-BJ2-boo-d-03-0-UI.s1 /CLONE=UI-R-BJ2-boo-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.49817.1 /TIER=ConsEnd /STK=0 /UG=Rn.49817 /UG_TITLE=ESTs, Weakly similar to F21A10.2.p (Caenorhabditis elegans) (C.elegans) BF414264 similar to chromosome 11 open reading frame 9 RGD1562127 362879 XM_001080934 /// XM_002729792 0045449 // regulation of transcription // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1396353_at BF406671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406671 /DB_XREF=gi:11394646 /DB_XREF=UI-R-BJ2-bpv-g-07-0-UI.s1 /CLONE=UI-R-BJ2-bpv-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.50270.1 /TIER=ConsEnd /STK=0 /UG=Rn.50270 /UG_TITLE=ESTs, Weakly similar to protein phosphatase 2 (formerly 2A), regulatory subunit B (PR72), alpha isoform and (PR 130), beta isoform; protein phosphatase 2, regulatory subunit (59 kDa) (Mus musculus) (M.musculus) BF406671 similar to Protein phosphatase 2A, 59 kDa regulatory subunit B (PP2A PR59) (PP2A B-PR59) LOC682033 682033 NM_001139492 0005509 // calcium ion binding // inferred from electronic annotation 1396354_at BM390363 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390363 /DB_XREF=gi:18190421 /DB_XREF=UI-R-CN1-cjq-d-17-0-UI.s1 /CLONE=UI-R-CN1-cjq-d-17-0-UI /FEA=EST /CNT=2 /TID=Rn.50366.1 /TIER=ConsEnd /STK=0 /UG=Rn.50366 /UG_TITLE=ESTs BM390363 1396355_at BF411289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411289 /DB_XREF=gi:11399271 /DB_XREF=UI-R-BT1-bmn-e-04-0-UI.s1 /CLONE=UI-R-BT1-bmn-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.50841.1 /TIER=ConsEnd /STK=0 /UG=Rn.50841 /UG_TITLE=ESTs BF411289 1396356_at BI290042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290042 /DB_XREF=gi:14948237 /DB_XREF=UI-R-DK0-cfr-b-07-0-UI.s1 /CLONE=UI-R-DK0-cfr-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.52297.1 /TIER=ConsEnd /STK=0 /UG=Rn.52297 /UG_TITLE=ESTs BI290042 ELK4, member of ETS oncogene family Elk4 304786 NM_001107173 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1396357_at BF410752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410752 /DB_XREF=gi:11398727 /DB_XREF=UI-R-CA0-bmc-e-07-0-UI.s1 /CLONE=UI-R-CA0-bmc-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.52358.1 /TIER=ConsEnd /STK=0 /UG=Rn.52358 /UG_TITLE=ESTs, Weakly similar to T31083 paranodin - rat (R.norvegicus) BF410752 similar to contactin associated protein-like 5 isoform 1 LOC304725 304725 XM_002724840 /// XM_002727986 0007155 // cell adhesion // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005102 // receptor binding // inferred from electronic annotation 1396358_s_at BE116686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116686 /DB_XREF=gi:8508791 /DB_XREF=UI-R-BS1-aye-b-04-0-UI.s1 /CLONE=UI-R-BS1-aye-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.52712.1 /TIER=ConsEnd /STK=0 /UG=Rn.52712 /UG_TITLE=ESTs BE116686 1396359_at BF408240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408240 /DB_XREF=gi:11396255 /DB_XREF=UI-R-BJ2-bqr-h-08-0-UI.s1 /CLONE=UI-R-BJ2-bqr-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.53600.1 /TIER=ConsEnd /STK=0 /UG=Rn.53600 /UG_TITLE=ESTs BF408240 1396360_at BI283535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283535 /DB_XREF=gi:14935377 /DB_XREF=UI-R-CZ0-bzc-f-03-0-UI.s1 /CLONE=UI-R-CZ0-bzc-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.53641.1 /TIER=ConsEnd /STK=0 /UG=Rn.53641 /UG_TITLE=ESTs, Moderately similar to ALDR RAT ALDOSE REDUCTASE (R.norvegicus) BI283535 Aldo-keto reductase family 1, member B1 (aldose reductase) Akr1b1 24192 NM_012498 0006061 // sorbitol biosynthetic process // inferred from mutant phenotype /// 0008152 // metabolic process // not recorded /// 0010033 // response to organic substance // inferred from direct assay /// 0031098 // stress-activated protein kinase signaling cascade // inferred from mutant phenotype /// 0046427 // positive regulation of JAK-STAT cascade // inferred from mutant phenotype /// 0048661 // positive regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004032 // aldehyde reductase activity // inferred from direct assay /// 0004032 // aldehyde reductase activity // not recorded /// 0004032 // aldehyde reductase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1396361_at BF393282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393282 /DB_XREF=gi:11378137 /DB_XREF=UI-R-CA0-bfs-h-10-0-UI.s1 /CLONE=UI-R-CA0-bfs-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.58020.1 /TIER=ConsEnd /STK=0 /UG=Rn.58020 /UG_TITLE=ESTs BF393282 1396362_at BF398806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398806 /DB_XREF=gi:11383807 /DB_XREF=UI-R-CA1-biz-e-19-0-UI.s1 /CLONE=UI-R-CA1-biz-e-19-0-UI /FEA=EST /CNT=2 /TID=Rn.58965.1 /TIER=ConsEnd /STK=0 /UG=Rn.58965 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) BF398806 1396363_at BF399356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399356 /DB_XREF=gi:11384360 /DB_XREF=UI-R-CA1-bjb-i-08-0-UI.s1 /CLONE=UI-R-CA1-bjb-i-08-0-UI /FEA=EST /CNT=2 /TID=Rn.59349.1 /TIER=ConsEnd /STK=0 /UG=Rn.59349 /UG_TITLE=ESTs BF399356 1396364_at BF406377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406377 /DB_XREF=gi:11394352 /DB_XREF=UI-R-CA1-bjf-d-24-0-UI.s1 /CLONE=UI-R-CA1-bjf-d-24-0-UI /FEA=EST /CNT=2 /TID=Rn.59450.1 /TIER=ConsEnd /STK=0 /UG=Rn.59450 /UG_TITLE=ESTs BF406377 1396365_at BF389520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389520 /DB_XREF=gi:11374355 /DB_XREF=UI-R-CJ0-bfc-f-12-0-UI.s1 /CLONE=UI-R-CJ0-bfc-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.59602.1 /TIER=ConsEnd /STK=0 /UG=Rn.59602 /UG_TITLE=ESTs, Weakly similar to pendrin (H.sapiens) BF389520 RGD1564575 RGD1564575 501056 NM_001163477 1396366_at BF409020 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409020 /DB_XREF=gi:11396995 /DB_XREF=UI-R-BT1-bkl-a-12-0-UI.s1 /CLONE=UI-R-BT1-bkl-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.61219.1 /TIER=ConsEnd /STK=0 /UG=Rn.61219 /UG_TITLE=ESTs BF409020 1396367_at BF409474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409474 /DB_XREF=gi:11397449 /DB_XREF=UI-R-CA1-blj-e-12-0-UI.s1 /CLONE=UI-R-CA1-blj-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.61368.1 /TIER=ConsEnd /STK=0 /UG=Rn.61368 /UG_TITLE=ESTs BF409474 1396368_at BF409869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409869 /DB_XREF=gi:11397844 /DB_XREF=UI-R-CA1-bjr-g-05-0-UI.s1 /CLONE=UI-R-CA1-bjr-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.61512.1 /TIER=ConsEnd /STK=0 /UG=Rn.61512 /UG_TITLE=ESTs BF409869 1396369_at BF412269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412269 /DB_XREF=gi:11400258 /DB_XREF=UI-R-BT1-bnb-d-11-0-UI.s1 /CLONE=UI-R-BT1-bnb-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.62044.1 /TIER=ConsEnd /STK=0 /UG=Rn.62044 /UG_TITLE=ESTs BF412269 1396370_at BF412463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412463 /DB_XREF=gi:11400452 /DB_XREF=UI-R-BT1-bnd-f-12-0-UI.s1 /CLONE=UI-R-BT1-bnd-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.62093.1 /TIER=ConsEnd /STK=0 /UG=Rn.62093 /UG_TITLE=ESTs BF412463 1396371_at BF412674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412674 /DB_XREF=gi:11400663 /DB_XREF=UI-R-BT1-bnq-g-06-0-UI.s1 /CLONE=UI-R-BT1-bnq-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.62138.1 /TIER=ConsEnd /STK=0 /UG=Rn.62138 /UG_TITLE=ESTs BF412674 1396372_at BF411657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411657 /DB_XREF=gi:11399646 /DB_XREF=UI-R-BT1-bmv-b-02-0-UI.s1 /CLONE=UI-R-BT1-bmv-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.62857.1 /TIER=ConsEnd /STK=0 /UG=Rn.62857 /UG_TITLE=ESTs BF411657 1396373_at BF416860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416860 /DB_XREF=gi:11404849 /DB_XREF=UI-R-CA0-bkv-h-08-0-UI.s1 /CLONE=UI-R-CA0-bkv-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.63167.1 /TIER=ConsEnd /STK=0 /UG=Rn.63167 /UG_TITLE=ESTs BF416860 1396374_at BF394299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394299 /DB_XREF=gi:11379163 /DB_XREF=UI-R-CA0-bgr-c-11-0-UI.s1 /CLONE=UI-R-CA0-bgr-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.63266.1 /TIER=ConsEnd /STK=0 /UG=Rn.63266 /UG_TITLE=ESTs BF394299 1396375_at BF417934 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417934 /DB_XREF=gi:11405923 /DB_XREF=UI-R-CA0-bly-b-11-0-UI.s1 /CLONE=UI-R-CA0-bly-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.63292.1 /TIER=ConsEnd /STK=0 /UG=Rn.63292 /UG_TITLE=ESTs BF417934 1396376_at BF393935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393935 /DB_XREF=gi:11378799 /DB_XREF=UI-R-CA0-bgw-g-12-0-UI.s1 /CLONE=UI-R-CA0-bgw-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.63505.1 /TIER=ConsEnd /STK=0 /UG=Rn.63505 /UG_TITLE=ESTs BF393935 1396377_at BF419654 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419654 /DB_XREF=gi:11407643 /DB_XREF=UI-R-CA0-bpe-f-09-0-UI.s1 /CLONE=UI-R-CA0-bpe-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.63594.1 /TIER=ConsEnd /STK=0 /UG=Rn.63594 /UG_TITLE=ESTs BF419654 1396378_at BF412429 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412429 /DB_XREF=gi:11400418 /DB_XREF=UI-R-BT1-bnd-b-07-0-UI.s1 /CLONE=UI-R-BT1-bnd-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.64358.1 /TIER=ConsEnd /STK=0 /UG=Rn.64358 /UG_TITLE=ESTs BF412429 1396379_at BE096478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096478 /DB_XREF=gi:8487409 /DB_XREF=UI-R-BU0-apg-f-01-0-UI.s1 /CLONE=UI-R-BU0-apg-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.64424.1 /TIER=ConsEnd /STK=0 /UG=Rn.64424 /UG_TITLE=ESTs, Moderately similar to S37032 gene LL5 protein - rat (R.norvegicus) BE096478 pleckstrin homology-like domain, family B, member 3 Phldb3 308431 NM_001191622 /// XM_001076710 /// XM_218447 1396380_at BM387013 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387013 /DB_XREF=gi:18187066 /DB_XREF=UI-R-CN1-cji-m-13-0-UI.s1 /CLONE=UI-R-CN1-cji-m-13-0-UI /FEA=EST /CNT=2 /TID=Rn.71304.1 /TIER=ConsEnd /STK=0 /UG=Rn.71304 /UG_TITLE=ESTs BM387013 1396381_at BE097451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097451 /DB_XREF=gi:8488382 /DB_XREF=UI-R-BO1-apx-f-08-0-UI.s1 /CLONE=UI-R-BO1-apx-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.72979.1 /TIER=ConsEnd /STK=0 /UG=Rn.72979 /UG_TITLE=ESTs BE097451 hypothetical protein LOC688736 MGC116202 688736 NM_001044292 1396382_at BE098176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098176 /DB_XREF=gi:8490004 /DB_XREF=UI-R-BJ1-ata-c-12-0-UI.s1 /CLONE=UI-R-BJ1-ata-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.27270.1 /TIER=ConsEnd /STK=0 /UG=Rn.27270 /UG_TITLE=ESTs BE098176 1396383_at BF412690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412690 /DB_XREF=gi:11400679 /DB_XREF=UI-R-BT1-bnt-a-02-0-UI.s1 /CLONE=UI-R-BT1-bnt-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.27730.1 /TIER=ConsEnd /STK=0 /UG=Rn.27730 /UG_TITLE=ESTs, Weakly similar to ALDEHYDE DEHYDROGENASE, DIMERIC NADP-PREFERRING (R.norvegicus) BF412690 aldehyde dehydrogenase 3 family, member B1 Aldh3b1 309147 NM_001006998 0006081 // cellular aldehyde metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0004030 // aldehyde dehydrogenase [NAD(P)+] activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1396384_at AW521197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521197 /DB_XREF=gi:7163575 /DB_XREF=UI-R-BO0-agk-d-07-0-UI.s1 /CLONE=UI-R-BO0-agk-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.27828.1 /TIER=ConsEnd /STK=0 /UG=Rn.27828 /UG_TITLE=ESTs, Moderately similar to jumping translocation breakpoint (Rattus norvegicus) (R.norvegicus) AW521197 1396385_at BF387763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387763 /DB_XREF=gi:11372628 /DB_XREF=UI-R-CA1-bbu-h-09-0-UI.s1 /CLONE=UI-R-CA1-bbu-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.37981.1 /TIER=ConsEnd /STK=0 /UG=Rn.37981 /UG_TITLE=ESTs BF387763 1396386_at BF408665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408665 /DB_XREF=gi:11396640 /DB_XREF=UI-R-BJ2-brg-e-10-0-UI.s1 /CLONE=UI-R-BJ2-brg-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.40741.1 /TIER=ConsEnd /STK=0 /UG=Rn.40741 /UG_TITLE=ESTs, Moderately similar to BAE2_HUMAN BETA SECRETASE 2 PRECURSOR (H.sapiens) BF408665 Beta-site APP-cleaving enzyme 2 Bace2 288227 NM_001002802 0006508 // proteolysis // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0006509 // membrane protein ectodomain proteolysis // inferred from sequence or structural similarity /// 0006509 // membrane protein ectodomain proteolysis // inferred from electronic annotation /// 0042985 // negative regulation of amyloid precursor protein biosynthetic process // not recorded /// 0042985 // negative regulation of amyloid precursor protein biosynthetic process // inferred from sequence or structural similarity /// 0042985 // negative regulation of amyloid precursor protein biosynthetic process // inferred from electronic annotation 0005768 // endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004190 // aspartic-type endopeptidase activity // not recorded /// 0004190 // aspartic-type endopeptidase activity // inferred from sequence or structural similarity /// 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1396387_at BE112016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112016 /DB_XREF=gi:8504161 /DB_XREF=UI-R-BJ1-avk-b-10-0-UI.s1 /CLONE=UI-R-BJ1-avk-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.41713.1 /TIER=ConsEnd /STK=0 /UG=Rn.41713 /UG_TITLE=ESTs BE112016 1396388_at AW522161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522161 /DB_XREF=gi:7164546 /DB_XREF=UI-R-BO0-agm-b-12-0-UI.s1 /CLONE=UI-R-BO0-agm-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.45315.1 /TIER=ConsEnd /STK=0 /UG=Rn.45315 /UG_TITLE=ESTs AW522161 potassium channel tetramerisation domain containing 4 Kctd4 691835 NM_001109650 0006813 // potassium ion transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1396389_at AW522358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522358 /DB_XREF=gi:7164743 /DB_XREF=UI-R-BO0-ahw-b-06-0-UI.s1 /CLONE=UI-R-BO0-ahw-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.45372.1 /TIER=ConsEnd /STK=0 /UG=Rn.45372 /UG_TITLE=ESTs AW522358 similar to phosphatidylinositol-4-phosphate 5-kinase-like 1 LOC687758 687758 XM_001080030 0046488 // phosphatidylinositol metabolic process // inferred from electronic annotation 0016307 // phosphatidylinositol phosphate kinase activity // inferred from electronic annotation 1396390_at BE105697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105697 /DB_XREF=gi:8497839 /DB_XREF=UI-R-BO1-asi-e-02-0-UI.s1 /CLONE=UI-R-BO1-asi-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.45579.1 /TIER=ConsEnd /STK=0 /UG=Rn.45579 /UG_TITLE=ESTs BE105697 hypothetical protein LOC100270669 LOC100270669 100270669 NM_001144957 0007165 // signal transduction // inferred from electronic annotation 0008603 // cAMP-dependent protein kinase regulator activity // inferred from electronic annotation 1396391_at BF413637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413637 /DB_XREF=gi:11401626 /DB_XREF=UI-R-CA0-bog-g-03-0-UI.s1 /CLONE=UI-R-CA0-bog-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.45845.1 /TIER=ConsEnd /STK=0 /UG=Rn.45845 /UG_TITLE=ESTs BF413637 1396392_at BF403099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403099 /DB_XREF=gi:11391074 /DB_XREF=UI-R-CA0-biy-j-22-0-UI.s1 /CLONE=UI-R-CA0-biy-j-22-0-UI /FEA=EST /CNT=2 /TID=Rn.45990.1 /TIER=ConsEnd /STK=0 /UG=Rn.45990 /UG_TITLE=ESTs, Highly similar to WS3_HUMAN WS-3 PROTEIN (H.sapiens) BF403099 Dynactin 6 Dctn6 290798 NM_001106085 0005869 // dynactin complex // not recorded 0016740 // transferase activity // inferred from electronic annotation /// 0045502 // dynein binding // not recorded 1396393_at AW526669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526669 /DB_XREF=gi:7169083 /DB_XREF=UI-R-BO1-ajd-f-08-0-UI.s1 /CLONE=UI-R-BO1-ajd-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.46281.1 /TIER=ConsEnd /STK=0 /UG=Rn.46281 /UG_TITLE=ESTs AW526669 1396394_at AW527140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527140 /DB_XREF=gi:7169554 /DB_XREF=UI-R-BO1-ajm-a-04-0-UI.s1 /CLONE=UI-R-BO1-ajm-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.46433.1 /TIER=ConsEnd /STK=0 /UG=Rn.46433 /UG_TITLE=ESTs AW527140 1396395_at AW527942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527942 /DB_XREF=gi:7170356 /DB_XREF=UI-R-BT1-akb-h-08-0-UI.s1 /CLONE=UI-R-BT1-akb-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.46711.1 /TIER=ConsEnd /STK=0 /UG=Rn.46711 /UG_TITLE=ESTs AW527942 1396396_at AW528330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528330 /DB_XREF=gi:7170744 /DB_XREF=UI-R-BT1-ajx-c-03-0-UI.s1 /CLONE=UI-R-BT1-ajx-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.46840.1 /TIER=ConsEnd /STK=0 /UG=Rn.46840 /UG_TITLE=ESTs AW528330 1396397_at AW529321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529321 /DB_XREF=gi:7171735 /DB_XREF=UI-R-BT1-akm-f-05-0-UI.s1 /CLONE=UI-R-BT1-akm-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.46976.1 /TIER=ConsEnd /STK=0 /UG=Rn.46976 /UG_TITLE=ESTs AW529321 1396398_at BF407692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407692 /DB_XREF=gi:11395667 /DB_XREF=UI-R-BJ2-bqv-c-09-0-UI.s1 /CLONE=UI-R-BJ2-bqv-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.47332.1 /TIER=ConsEnd /STK=0 /UG=Rn.47332 /UG_TITLE=ESTs, Moderately similar to Y249_HUMAN HYPOTHETICAL PROTEIN KIAA0249 (H.sapiens) BF407692 lipin 2 Lpin2 316737 NM_001108236 0006629 // lipid metabolic process // not recorded /// 0016311 // dephosphorylation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005789 // endoplasmic reticulum membrane // not recorded /// 0005829 // cytosol // not recorded 0003713 // transcription coactivator activity // not recorded /// 0008195 // phosphatidate phosphatase activity // not recorded 1396399_at AW530442 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530442 /DB_XREF=gi:7172856 /DB_XREF=UI-R-C4-akx-b-03-0-UI.s1 /CLONE=UI-R-C4-akx-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.47452.1 /TIER=ConsEnd /STK=0 /UG=Rn.47452 /UG_TITLE=ESTs AW530442 1396400_at BE105443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105443 /DB_XREF=gi:8497545 /DB_XREF=UI-R-BO1-asn-g-11-0-UI.s1 /CLONE=UI-R-BO1-asn-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.47667.1 /TIER=ConsEnd /STK=0 /UG=Rn.47667 /UG_TITLE=ESTs BE105443 1396401_at AW433899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433899 /DB_XREF=gi:6965206 /DB_XREF=UI-R-BJ0p-afm-h-07-0-UI.s1 /CLONE=UI-R-BJ0p-afm-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.48049.1 /TIER=ConsEnd /STK=0 /UG=Rn.48049 /UG_TITLE=ESTs AW433899 RNA binding motif protein 17 Rbm17 291295 NM_001013058 0005622 // intracellular // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396402_at AW534347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534347 /DB_XREF=gi:7176761 /DB_XREF=UI-R-C4-alo-d-06-0-UI.s1 /CLONE=UI-R-C4-alo-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.48313.1 /TIER=ConsEnd /STK=0 /UG=Rn.48313 /UG_TITLE=ESTs AW534347 1396403_at BE107859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107859 /DB_XREF=gi:8499964 /DB_XREF=UI-R-CA0-awx-f-09-0-UI.s1 /CLONE=UI-R-CA0-awx-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.49036.1 /TIER=ConsEnd /STK=0 /UG=Rn.49036 /UG_TITLE=ESTs BE107859 1396404_at BE096794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096794 /DB_XREF=gi:8487725 /DB_XREF=UI-R-BU0-apn-b-10-0-UI.s1 /CLONE=UI-R-BU0-apn-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.49474.1 /TIER=ConsEnd /STK=0 /UG=Rn.49474 /UG_TITLE=ESTs BE096794 FUN14 domain containing 2 Fundc2 361288 NM_001135757 0005739 // mitochondrion // not recorded 1396405_at BE097557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097557 /DB_XREF=gi:8488488 /DB_XREF=UI-R-BO1-apz-a-05-0-UI.s1 /CLONE=UI-R-BO1-apz-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.49636.1 /TIER=ConsEnd /STK=0 /UG=Rn.49636 /UG_TITLE=ESTs BE097557 1396406_at BE102611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102611 /DB_XREF=gi:8494710 /DB_XREF=UI-R-BT1-aqs-a-06-0-UI.s1 /CLONE=UI-R-BT1-aqs-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.50352.1 /TIER=ConsEnd /STK=0 /UG=Rn.50352 /UG_TITLE=ESTs BE102611 1396407_at BF405091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405091 /DB_XREF=gi:11393066 /DB_XREF=UI-R-CA1-bip-e-07-0-UI.s1 /CLONE=UI-R-CA1-bip-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.51020.1 /TIER=ConsEnd /STK=0 /UG=Rn.51020 /UG_TITLE=ESTs BF405091 growth arrest specific 8 Gas8 361438 NM_001039030 0030317 // sperm motility // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005874 // microtubule // not recorded /// 0005929 // cilium // inferred from electronic annotation /// 0005932 // microtubule basal body // inferred from electronic annotation /// 0009434 // microtubule-based flagellum // inferred from electronic annotation /// 0009434 // microtubule-based flagellum // not recorded /// 0019861 // flagellum // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396408_at BE108736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108736 /DB_XREF=gi:8500841 /DB_XREF=UI-R-CA0-axh-h-05-0-UI.s1 /CLONE=UI-R-CA0-axh-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.51605.1 /TIER=ConsEnd /STK=0 /UG=Rn.51605 /UG_TITLE=ESTs BE108736 similar to RAS-related C3 botulinum substrate 3 LOC688319 688319 XM_001081814 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005525 // GTP binding // inferred from electronic annotation 1396409_at BE113690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113690 /DB_XREF=gi:8505795 /DB_XREF=UI-R-BJ1-aws-c-07-0-UI.s1 /CLONE=UI-R-BJ1-aws-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.52234.1 /TIER=ConsEnd /STK=0 /UG=Rn.52234 /UG_TITLE=ESTs, Moderately similar to dystrobrevin (M.musculus) BE113690 dystrobrevin, beta Dtnb 362715 NM_001012191 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0045202 // synapse // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1396410_at BE116258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116258 /DB_XREF=gi:8508363 /DB_XREF=UI-R-BS1-ayb-c-02-0-UI.s1 /CLONE=UI-R-BS1-ayb-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.52647.1 /TIER=ConsEnd /STK=0 /UG=Rn.52647 /UG_TITLE=ESTs BE116258 1396411_at BE117439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117439 /DB_XREF=gi:8509544 /DB_XREF=UI-R-BS1-ayi-g-11-0-UI.s1 /CLONE=UI-R-BS1-ayi-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.52839.1 /TIER=ConsEnd /STK=0 /UG=Rn.52839 /UG_TITLE=ESTs BE117439 phosphoinositide-3-kinase, catalytic, alpha polypeptide Pik3ca 170911 NM_133399 /// XM_001059350 /// XM_001063573 0006006 // glucose metabolic process // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006916 // anti-apoptosis // not recorded /// 0040014 // regulation of multicellular organism growth // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043491 // protein kinase B signaling cascade // not recorded /// 0046854 // phosphoinositide phosphorylation // inferred from direct assay /// 0046854 // phosphoinositide phosphorylation // not recorded /// 0046854 // phosphoinositide phosphorylation // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation 0005829 // cytosol // not recorded /// 0005942 // phosphoinositide 3-kinase complex // inferred from direct assay /// 0005942 // phosphoinositide 3-kinase complex // not recorded /// 0005942 // phosphoinositide 3-kinase complex // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded 0004428 // inositol or phosphatidylinositol kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0016301 // kinase activity // inferred from electronic annotation /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from direct assay /// 0016303 // 1-phosphatidylinositol-3-kinase activity // not recorded /// 0016303 // 1-phosphatidylinositol-3-kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0043560 // insulin receptor substrate binding // not recorded /// 0046934 // phosphatidylinositol-4,5-bisphosphate 3-kinase activity // not recorded 1396412_at BF391281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391281 /DB_XREF=gi:11376133 /DB_XREF=UI-R-CA1-bcv-e-10-0-UI.s1 /CLONE=UI-R-CA1-bcv-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.53105.1 /TIER=ConsEnd /STK=0 /UG=Rn.53105 /UG_TITLE=ESTs BF391281 1396413_at BE119473 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119473 /DB_XREF=gi:8511618 /DB_XREF=UI-R-CA0-bae-f-05-0-UI.s1 /CLONE=UI-R-CA0-bae-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.53271.1 /TIER=ConsEnd /STK=0 /UG=Rn.53271 /UG_TITLE=ESTs BE119473 1396414_at BF390501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390501 /DB_XREF=gi:11375347 /DB_XREF=UI-R-CA1-bch-g-08-0-UI.s1 /CLONE=UI-R-CA1-bch-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.53361.1 /TIER=ConsEnd /STK=0 /UG=Rn.53361 /UG_TITLE=ESTs BF390501 1396415_at BF387862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387862 /DB_XREF=gi:11372686 /DB_XREF=UI-R-CA1-bbv-f-04-0-UI.s1 /CLONE=UI-R-CA1-bbv-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.53715.1 /TIER=ConsEnd /STK=0 /UG=Rn.53715 /UG_TITLE=ESTs BF387862 Phosphatidylinositol glycan anchor biosynthesis, class P Pigp 288238 NM_001099758 0016254 // preassembly of GPI anchor in ER membrane // not recorded 1396416_at BE102691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102691 /DB_XREF=gi:8494790 /DB_XREF=UI-R-BT1-aqp-a-03-0-UI.s1 /CLONE=UI-R-BT1-aqp-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.56968.1 /TIER=ConsEnd /STK=0 /UG=Rn.56968 /UG_TITLE=ESTs BE102691 1396417_at BF390967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390967 /DB_XREF=gi:11375814 /DB_XREF=UI-R-CA1-bce-f-05-0-UI.s1 /CLONE=UI-R-CA1-bce-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.57344.1 /TIER=ConsEnd /STK=0 /UG=Rn.57344 /UG_TITLE=ESTs BF390967 1396418_at BF394629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394629 /DB_XREF=gi:11379557 /DB_XREF=UI-R-CA0-bfy-a-03-0-UI.s1 /CLONE=UI-R-CA0-bfy-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.58316.1 /TIER=ConsEnd /STK=0 /UG=Rn.58316 /UG_TITLE=ESTs BF394629 CDNA sequence BC049702-like LOC100360128 100360128 XM_002727665 /// XM_002730175 1396419_at BF394908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394908 /DB_XREF=gi:11379868 /DB_XREF=UI-R-CA0-bgf-c-08-0-UI.s1 /CLONE=UI-R-CA0-bgf-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.58376.1 /TIER=ConsEnd /STK=0 /UG=Rn.58376 /UG_TITLE=ESTs BF394908 1396420_at BF395914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395914 /DB_XREF=gi:11380885 /DB_XREF=UI-R-BS2-bdt-a-03-0-UI.s1 /CLONE=UI-R-BS2-bdt-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.58483.1 /TIER=ConsEnd /STK=0 /UG=Rn.58483 /UG_TITLE=ESTs BF395914 1396421_at BF404508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404508 /DB_XREF=gi:11392523 /DB_XREF=UI-R-CA1-big-g-05-0-UI.s1 /CLONE=UI-R-CA1-big-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.58618.1 /TIER=ConsEnd /STK=0 /UG=Rn.58618 /UG_TITLE=ESTs BF404508 1396422_at BF397628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397628 /DB_XREF=gi:11382612 /DB_XREF=UI-R-BS2-bfa-g-05-0-UI.s1 /CLONE=UI-R-BS2-bfa-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.58862.1 /TIER=ConsEnd /STK=0 /UG=Rn.58862 /UG_TITLE=ESTs BF397628 1396423_at BF399741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399741 /DB_XREF=gi:11384751 /DB_XREF=UI-R-CA0-bhy-a-04-0-UI.s2 /CLONE=UI-R-CA0-bhy-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.59455.1 /TIER=ConsEnd /STK=0 /UG=Rn.59455 /UG_TITLE=ESTs BF399741 1396424_at BF400586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400586 /DB_XREF=gi:11388561 /DB_XREF=UI-R-CA0-bhd-b-04-0-UI.s1 /CLONE=UI-R-CA0-bhd-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.59589.1 /TIER=ConsEnd /STK=0 /UG=Rn.59589 /UG_TITLE=ESTs BF400586 1396425_at BF402681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402681 /DB_XREF=gi:11390656 /DB_XREF=UI-R-CA0-bho-d-03-0-UI.s1 /CLONE=UI-R-CA0-bho-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.60103.1 /TIER=ConsEnd /STK=0 /UG=Rn.60103 /UG_TITLE=ESTs BF402681 1396426_at BF404920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404920 /DB_XREF=gi:11392895 /DB_XREF=UI-R-CA1-bij-c-07-0-UI.s1 /CLONE=UI-R-CA1-bij-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.60620.1 /TIER=ConsEnd /STK=0 /UG=Rn.60620 /UG_TITLE=ESTs BF404920 1396427_at BF416565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416565 /DB_XREF=gi:11404554 /DB_XREF=UI-R-CA1-bkt-b-05-0-UI.s1 /CLONE=UI-R-CA1-bkt-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.61161.1 /TIER=ConsEnd /STK=0 /UG=Rn.61161 /UG_TITLE=ESTs BF416565 1396428_at BF409243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409243 /DB_XREF=gi:11397218 /DB_XREF=UI-R-BT1-bkn-g-01-0-UI.s1 /CLONE=UI-R-BT1-bkn-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.61292.1 /TIER=ConsEnd /STK=0 /UG=Rn.61292 /UG_TITLE=ESTs BF409243 1396429_at BF409658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409658 /DB_XREF=gi:11397633 /DB_XREF=UI-R-CA1-bln-b-03-0-UI.s1 /CLONE=UI-R-CA1-bln-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.61432.1 /TIER=ConsEnd /STK=0 /UG=Rn.61432 /UG_TITLE=ESTs BF409658 1396430_at BF410086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410086 /DB_XREF=gi:11398061 /DB_XREF=UI-R-CA1-bjt-d-04-0-UI.s1 /CLONE=UI-R-CA1-bjt-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.61569.1 /TIER=ConsEnd /STK=0 /UG=Rn.61569 /UG_TITLE=ESTs BF410086 1396431_at BF410221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410221 /DB_XREF=gi:11398196 /DB_XREF=UI-R-CA1-bju-h-11-0-UI.s1 /CLONE=UI-R-CA1-bju-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.61623.1 /TIER=ConsEnd /STK=0 /UG=Rn.61623 /UG_TITLE=ESTs BF410221 1396432_at BF410473 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410473 /DB_XREF=gi:11398448 /DB_XREF=UI-R-CA1-bjx-h-08-0-UI.s1 /CLONE=UI-R-CA1-bjx-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.61716.1 /TIER=ConsEnd /STK=0 /UG=Rn.61716 /UG_TITLE=ESTs BF410473 1396433_at BF413338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413338 /DB_XREF=gi:11401327 /DB_XREF=UI-R-BT1-bnw-h-03-0-UI.s1 /CLONE=UI-R-BT1-bnw-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.62308.1 /TIER=ConsEnd /STK=0 /UG=Rn.62308 /UG_TITLE=ESTs BF413338 1396434_at BF414402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414402 /DB_XREF=gi:11402391 /DB_XREF=UI-R-CA0-bpa-a-03-0-UI.s1 /CLONE=UI-R-CA0-bpa-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.62529.1 /TIER=ConsEnd /STK=0 /UG=Rn.62529 /UG_TITLE=ESTs BF414402 1396435_at AW914868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW914868 /DB_XREF=gi:8080549 /DB_XREF=EST346172 /CLONE=RGIBI47 /FEA=EST /CNT=2 /TID=Rn.62559.1 /TIER=ConsEnd /STK=0 /UG=Rn.62559 /UG_TITLE=ESTs AW914868 1396436_at BF406417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406417 /DB_XREF=gi:11394392 /DB_XREF=UI-R-CA1-bjf-l-18-0-UI.s1 /CLONE=UI-R-CA1-bjf-l-18-0-UI /FEA=EST /CNT=2 /TID=Rn.62860.1 /TIER=ConsEnd /STK=0 /UG=Rn.62860 /UG_TITLE=ESTs BF406417 1396437_at BM390835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390835 /DB_XREF=gi:18190888 /DB_XREF=UI-R-CN1-cjo-l-12-0-UI.s1 /CLONE=UI-R-CN1-cjo-l-12-0-UI /FEA=EST /CNT=2 /TID=Rn.62920.1 /TIER=ConsEnd /STK=0 /UG=Rn.62920 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) BM390835 hypothetical protein LOC687248 LOC687248 687248 XM_002727011 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1396438_at BF416791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416791 /DB_XREF=gi:11404780 /DB_XREF=UI-R-CA0-bkv-a-06-0-UI.s1 /CLONE=UI-R-CA0-bkv-a-06-0-UI /FEA=EST /CNT=2 /TID=Rn.63140.1 /TIER=ConsEnd /STK=0 /UG=Rn.63140 /UG_TITLE=ESTs BF416791 1396439_at BF419397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419397 /DB_XREF=gi:11407386 /DB_XREF=UI-R-CA1-bnr-b-11-0-UI.s1 /CLONE=UI-R-CA1-bnr-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.63501.1 /TIER=ConsEnd /STK=0 /UG=Rn.63501 /UG_TITLE=ESTs BF419397 1396440_at BF419659 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419659 /DB_XREF=gi:11407648 /DB_XREF=UI-R-CA0-bpe-g-02-0-UI.s1 /CLONE=UI-R-CA0-bpe-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.63596.1 /TIER=ConsEnd /STK=0 /UG=Rn.63596 /UG_TITLE=ESTs, Moderately similar to MITOCHONDRIAL CARNITINE O-PALMITOYLTRANSFERASE I, MUSCLE ISOFORM (R.norvegicus) BF419659 1396441_at BE108895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108895 /DB_XREF=gi:8501000 /DB_XREF=UI-R-BS1-ayz-f-05-0-UI.s1 /CLONE=UI-R-BS1-ayz-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.74937.1 /TIER=ConsEnd /STK=0 /UG=Rn.74937 /UG_TITLE=ESTs BE108895 1396442_at BE111933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111933 /DB_XREF=gi:8504038 /DB_XREF=UI-R-BS1-azu-f-12-0-UI.s1 /CLONE=UI-R-BS1-azu-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.52035.1 /TIER=ConsEnd /STK=0 /UG=Rn.52035 /UG_TITLE=ESTs BE111933 doublecortin-like kinase 2 Dclk2 310698 NM_001009691 /// NM_001195832 0006468 // protein phosphorylation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1396443_at BF287908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287908 /DB_XREF=gi:11218978 /DB_XREF=EST452499 /CLONE=RGIGL59 /FEA=EST /CNT=2 /TID=Rn.55472.1 /TIER=ConsEnd /STK=0 /UG=Rn.55472 /UG_TITLE=ESTs BF287908 1396444_at BF524934 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF524934 /DB_XREF=gi:11632901 /DB_XREF=UI-R-AE1-zh-g-04-0-UI.r1 /CLONE=UI-R-AE1-zh-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.72464.1 /TIER=ConsEnd /STK=0 /UG=Rn.72464 /UG_TITLE=ESTs BF524934 mitochondrial ribosomal protein L12 Mrpl12 303746 NM_001029900 0006390 // transcription from mitochondrial promoter // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005762 // mitochondrial large ribosomal subunit // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396445_at BI288520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288520 /DB_XREF=gi:14945187 /DB_XREF=UI-R-DK0-cdb-h-04-0-UI.s1 /CLONE=UI-R-DK0-cdb-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.78907.1 /TIER=ConsEnd /STK=0 /UG=Rn.78907 /UG_TITLE=ESTs, Weakly similar to T08734 hypothetical protein DKFZp566F0546.1 (H.sapiens) BI288520 RIB43A domain with coiled-coils 2 Ribc2 300122 NM_001013949 1396446_at BF522502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522502 /DB_XREF=gi:11630469 /DB_XREF=UI-R-C3-tg-f-09-0-UI.r2 /CLONE=UI-R-C3-tg-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.63758.1 /TIER=ConsEnd /STK=0 /UG=Rn.63758 /UG_TITLE=ESTs BF522502 calcium activated nucleotidase 1 Cant1 246272 NM_144754 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0004871 // signal transducer activity // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0016462 // pyrophosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017110 // nucleoside-diphosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1396447_at BF287591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287591 /DB_XREF=gi:11218661 /DB_XREF=EST452182 /CLONE=RGIGI04 /FEA=EST /CNT=2 /TID=Rn.55437.1 /TIER=ConsEnd /STK=0 /UG=Rn.55437 /UG_TITLE=ESTs BF287591 1396448_at BE119407 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119407 /DB_XREF=gi:8511512 /DB_XREF=UI-R-CA0-bac-c-04-0-UI.s1 /CLONE=UI-R-CA0-bac-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.53236.1 /TIER=ConsEnd /STK=0 /UG=Rn.53236 /UG_TITLE=ESTs BE119407 1396449_at BF560693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF560693 /DB_XREF=gi:11670423 /DB_XREF=UI-R-C0-iy-c-08-0-UI.r2 /CLONE=UI-R-C0-iy-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.72734.1 /TIER=ConsEnd /STK=0 /UG=Rn.72734 /UG_TITLE=ESTs BF560693 1396450_at AW918724 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918724 /DB_XREF=gi:8084508 /DB_XREF=EST350028 /CLONE=RGIEX16 /FEA=EST /CNT=2 /TID=Rn.79614.1 /TIER=ConsEnd /STK=0 /UG=Rn.79614 /UG_TITLE=ESTs, Weakly similar to JC5614 RNB6 protein - rat (R.norvegicus) AW918724 enabled homolog (Drosophila) Enah 360891 NM_001012150 0001843 // neural tube closure // not recorded /// 0006928 // cellular component movement // not recorded /// 0007015 // actin filament organization // not recorded /// 0007411 // axon guidance // not recorded /// 0008154 // actin polymerization or depolymerization // not recorded /// 0030036 // actin cytoskeleton organization // not recorded /// 0046907 // intracellular transport // inferred from electronic annotation 0001725 // stress fiber // not recorded /// 0005829 // cytosol // not recorded /// 0005925 // focal adhesion // not recorded /// 0030027 // lamellipodium // not recorded /// 0030175 // filopodium // not recorded 0005515 // protein binding // not recorded /// 0005522 // profilin binding // not recorded /// 0017124 // SH3 domain binding // not recorded /// 0050699 // WW domain binding // not recorded 1396451_at BF393275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393275 /DB_XREF=gi:11378135 /DB_XREF=UI-R-CA0-bfs-h-08-0-UI.s1 /CLONE=UI-R-CA0-bfs-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.45387.1 /TIER=ConsEnd /STK=0 /UG=Rn.45387 /UG_TITLE=ESTs BF393275 1396452_at BF547340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547340 /DB_XREF=gi:11638447 /DB_XREF=UI-R-C2p-rk-d-08-0-UI.r1 /CLONE=UI-R-C2p-rk-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.79857.1 /TIER=ConsEnd /STK=0 /UG=Rn.79857 /UG_TITLE=ESTs BF547340 alkB, alkylation repair homolog 4 (E. coli) Alkbh4 288587 NM_001105920 0055114 // oxidation reduction // inferred from electronic annotation 0010302 // 2-oxoglutarate-dependent dioxygenase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1396453_at BM386772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386772 /DB_XREF=gi:18186825 /DB_XREF=UI-R-CN1-cjg-p-08-0-UI.s1 /CLONE=UI-R-CN1-cjg-p-08-0-UI /FEA=EST /CNT=2 /TID=Rn.52838.1 /TIER=ConsEnd /STK=0 /UG=Rn.52838 /UG_TITLE=ESTs BM386772 1396454_at BF391035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391035 /DB_XREF=gi:11375882 /DB_XREF=UI-R-CA1-bcf-d-08-0-UI.s1 /CLONE=UI-R-CA1-bcf-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.61248.1 /TIER=ConsEnd /STK=0 /UG=Rn.61248 /UG_TITLE=ESTs BF391035 1396455_at BI302778 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302778 /DB_XREF=gi:14979058 /DB_XREF=UI-R-DO0-ciy-k-19-0-UI.s1 /CLONE=UI-R-DO0-ciy-k-19-0-UI /FEA=EST /CNT=2 /TID=Rn.77409.1 /TIER=ConsEnd /STK=0 /UG=Rn.77409 /UG_TITLE=ESTs BI302778 uroplakin 1A Upk1a 365227 NM_001108911 0030855 // epithelial cell differentiation // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded 0005515 // protein binding // not recorded /// 0048029 // monosaccharide binding // not recorded 1396456_at BF398860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398860 /DB_XREF=gi:11383862 /DB_XREF=UI-R-CA1-bja-a-05-0-UI.s1 /CLONE=UI-R-CA1-bja-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.59185.1 /TIER=ConsEnd /STK=0 /UG=Rn.59185 /UG_TITLE=ESTs BF398860 1396457_at AW920931 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920931 /DB_XREF=gi:8086748 /DB_XREF=EST352235 /CLONE=RGIHJ62 /FEA=EST /CNT=2 /TID=Rn.43782.1 /TIER=ConsEnd /STK=0 /UG=Rn.43782 /UG_TITLE=ESTs AW920931 1396458_at BI273920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI273920 /DB_XREF=gi:14884351 /DB_XREF=UI-R-CW0-bwa-e-07-0-UI.s1 /CLONE=UI-R-CW0-bwa-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.66612.1 /TIER=ConsEnd /STK=0 /UG=Rn.66612 /UG_TITLE=ESTs, Highly similar to FASCIN (M.musculus) BI273920 Similar to Fascin (Singed-like protein) LOC683788 683788 NM_001100806 0001889 // liver development // inferred from expression pattern /// 0071460 // cellular response to cell-matrix adhesion // inferred from expression pattern 0001725 // stress fiber // inferred from direct assay /// 0001726 // ruffle // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0005902 // microvillus // inferred from direct assay /// 0030027 // lamellipodium // inferred from direct assay /// 0030175 // filopodium // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay 0003779 // actin binding // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0030674 // protein binding, bridging // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from electronic annotation 1396459_at BE096723 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096723 /DB_XREF=gi:8487654 /DB_XREF=UI-R-BU0-apl-g-10-0-UI.s1 /CLONE=UI-R-BU0-apl-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.41956.1 /TIER=ConsEnd /STK=0 /UG=Rn.41956 /UG_TITLE=ESTs BE096723 1396460_at AW522969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522969 /DB_XREF=gi:7165354 /DB_XREF=UI-R-BO0-ahp-g-09-0-UI.s1 /CLONE=UI-R-BO0-ahp-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.45526.1 /TIER=ConsEnd /STK=0 /UG=Rn.45526 /UG_TITLE=ESTs AW522969 1396461_at BE117448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117448 /DB_XREF=gi:8509553 /DB_XREF=UI-R-BS1-ayi-h-08-0-UI.s1 /CLONE=UI-R-BS1-ayi-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.38285.1 /TIER=ConsEnd /STK=0 /UG=Rn.38285 /UG_TITLE=ESTs BE117448 1396462_at BF388609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388609 /DB_XREF=gi:11373433 /DB_XREF=UI-R-BS2-bdd-e-02-0-UI.s1 /CLONE=UI-R-BS2-bdd-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.78886.1 /TIER=ConsEnd /STK=0 /UG=Rn.78886 /UG_TITLE=ESTs, Moderately similar to SKD1 PROTEIN (M.musculus) BF388609 vacuolar protein sorting 4 homolog A (S. cerevisiae) Vps4a 246772 NM_145678 0000910 // cytokinesis // inferred from electronic annotation /// 0000910 // cytokinesis // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016197 // endosome transport // inferred by curator /// 0016197 // endosome transport // not recorded /// 0016197 // endosome transport // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0000815 // ESCRT III complex // inferred from electronic annotation /// 0000815 // ESCRT III complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from electronic annotation /// 0030496 // midbody // not recorded /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0017048 // Rho GTPase binding // inferred from physical interaction /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded 1396463_at BE127046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE127046 /DB_XREF=gi:8549755 /DB_XREF=DEPA0795 /FEA=EST /CNT=2 /TID=Rn.69781.1 /TIER=ConsEnd /STK=0 /UG=Rn.69781 /UG_TITLE=ESTs BE127046 pinin, desmosome associated protein Pnn 368070 NM_001109023 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0016607 // nuclear speck // not recorded 0005515 // protein binding // not recorded 1396464_at AI501766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501766 /DB_XREF=gi:4399617 /DB_XREF=UI-R-C2p-se-h-05-0-UI.s1 /CLONE=UI-R-C2p-se-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.36300.1 /TIER=ConsEnd /STK=0 /UG=Rn.36300 /UG_TITLE=ESTs, Moderately similar to SH31_RAT SH3-CONTAINING GRB2-LIKE PROTEIN 1 (SH3 DOMAIN PROTEIN 2B) (SH3P8) (R.norvegicus) AI501766 SH3-domain GRB2-like 2 Sh3gl2 116743 XM_001070855 /// XM_342857 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0006897 // endocytosis // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1396465_at AI407842 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407842 /DB_XREF=gi:4251346 /DB_XREF=EST236132 /CLONE=ROVEC21 /FEA=EST /CNT=2 /TID=Rn.56114.1 /TIER=ConsEnd /STK=0 /UG=Rn.56114 /UG_TITLE=ESTs, Weakly similar to MTM1_MOUSE MYOTUBULARIN (M.musculus) AI407842 myotubularin related protein 3 Mtmr3 305482 NM_001012038 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006470 // protein dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1396466_at BE097971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097971 /DB_XREF=gi:8488950 /DB_XREF=UI-R-C4-amc-h-02-0-UI.s1 /CLONE=UI-R-C4-amc-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.34806.1 /TIER=ConsEnd /STK=0 /UG=Rn.34806 /UG_TITLE=ESTs BE097971 1396467_at BM387106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387106 /DB_XREF=gi:18187159 /DB_XREF=UI-R-CN1-cji-m-24-0-UI.s1 /CLONE=UI-R-CN1-cji-m-24-0-UI /FEA=EST /CNT=2 /TID=Rn.29006.1 /TIER=ConsEnd /STK=0 /UG=Rn.29006 /UG_TITLE=ESTs, Moderately similar to H2AW_HUMAN CORE HISTONE MACRO-H2A.2 (HISTONE MACROH2A2) (MH2A2) (H.sapiens) BM387106 1396468_at BF556949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF556949 /DB_XREF=gi:11666679 /DB_XREF=UI-R-A1-ev-a-01-0-UI.r1 /CLONE=UI-R-A1-ev-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.64029.1 /TIER=ConsEnd /STK=0 /UG=Rn.64029 /UG_TITLE=ESTs, Highly similar to GTT2 RAT GLUTATHIONE S-TRANSFERASE YRS-YRS (R.norvegicus) BF556949 glutathione S-transferase, theta 2 Gstt2 29487 NM_012796 0006749 // glutathione metabolic process // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004364 // glutathione transferase activity // inferred from direct assay /// 0004364 // glutathione transferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1396469_at AI502701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502701 /DB_XREF=gi:4400552 /DB_XREF=UI-R-C1-le-g-05-0-UI.s1 /CLONE=UI-R-C1-le-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.35466.1 /TIER=ConsEnd /STK=0 /UG=Rn.35466 /UG_TITLE=ESTs AI502701 1396470_at BF561077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561077 /DB_XREF=gi:11670807 /DB_XREF=UI-R-E1-fd-h-03-0-UI.r1 /CLONE=UI-R-E1-fd-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.50253.1 /TIER=ConsEnd /STK=0 /UG=Rn.50253 /UG_TITLE=ESTs BF561077 1396471_at AI548716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548716 /DB_XREF=gi:4466204 /DB_XREF=UI-R-C3-tw-f-01-0-UI.s1 /CLONE=UI-R-C3-tw-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.41922.1 /TIER=ConsEnd /STK=0 /UG=Rn.41922 /UG_TITLE=ESTs AI548716 1396472_at BI276554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276554 /DB_XREF=gi:14921571 /DB_XREF=UI-R-CX0-bwv-f-10-0-UI.s1 /CLONE=UI-R-CX0-bwv-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.41882.1 /TIER=ConsEnd /STK=0 /UG=Rn.41882 /UG_TITLE=ESTs BI276554 1396473_at BM389874 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389874 /DB_XREF=gi:18189927 /DB_XREF=UI-R-CN1-cji-d-12-0-UI.s1 /CLONE=UI-R-CN1-cji-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.79500.1 /TIER=ConsEnd /STK=0 /UG=Rn.79500 /UG_TITLE=ESTs BM389874 1396474_at AW254078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254078 /DB_XREF=gi:6597669 /DB_XREF=UI-R-BJ0-aeo-h-07-0-UI.s1 /CLONE=UI-R-BJ0-aeo-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.40858.1 /TIER=ConsEnd /STK=0 /UG=Rn.40858 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) AW254078 1396475_at BM385312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385312 /DB_XREF=gi:18185365 /DB_XREF=UI-R-CN1-clv-i-01-0-UI.s1 /CLONE=UI-R-CN1-clv-i-01-0-UI /FEA=EST /CNT=2 /TID=Rn.81561.1 /TIER=ConsEnd /STK=0 /UG=Rn.81561 /UG_TITLE=ESTs BM385312 1396476_at BG379133 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379133 /DB_XREF=gi:13303605 /DB_XREF=UI-R-BT1-bnk-a-08-0-UI.s1 /CLONE=UI-R-BT1-bnk-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.53120.1 /TIER=ConsEnd /STK=0 /UG=Rn.53120 /UG_TITLE=ESTs BG379133 1396477_at AI010663 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010663 /DB_XREF=gi:3224495 /DB_XREF=EST205114 /CLONE=RMUAP68 /FEA=EST /CNT=2 /TID=Rn.37632.1 /TIER=ConsEnd /STK=0 /UG=Rn.37632 /UG_TITLE=ESTs, Highly similar to UNR RAT UNR PROTEIN (R.norvegicus) AI010663 cold shock domain containing E1, RNA binding /// cold shock domain containing E1, RNA binding-like Csde1 /// LOC100362464 100362464 /// 117180 NM_054006 /// XM_002729113 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396478_at BE120683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120683 /DB_XREF=gi:8512788 /DB_XREF=UI-R-CA0-bay-c-12-0-UI.s1 /CLONE=UI-R-CA0-bay-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.48929.1 /TIER=ConsEnd /STK=0 /UG=Rn.48929 /UG_TITLE=ESTs BE120683 transmembrane protein 164 Tmem164 367763 NM_001109014 1396479_at BF420007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420007 /DB_XREF=gi:11407996 /DB_XREF=UI-R-BJ2-bpi-h-06-0-UI.s1 /CLONE=UI-R-BJ2-bpi-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.63671.1 /TIER=ConsEnd /STK=0 /UG=Rn.63671 /UG_TITLE=ESTs BF420007 zinc finger and BTB domain containing 7C Zbtb7c 679155 NM_001127375 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1396480_at BG372249 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372249 /DB_XREF=gi:13268786 /DB_XREF=UI-R-CV0-bro-c-09-0-UI.s1 /CLONE=UI-R-CV0-bro-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.66900.1 /TIER=ConsEnd /STK=0 /UG=Rn.66900 /UG_TITLE=ESTs BG372249 1396481_at AW918413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918413 /DB_XREF=gi:8084189 /DB_XREF=EST349717 /CLONE=RGIER93 /FEA=EST /CNT=2 /TID=Rn.28794.1 /TIER=ConsEnd /STK=0 /UG=Rn.28794 /UG_TITLE=ESTs AW918413 1396482_at BF405754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405754 /DB_XREF=gi:11393724 /DB_XREF=UI-R-CA1-bje-g-13-0-UI.s1 /CLONE=UI-R-CA1-bje-g-13-0-UI /FEA=EST /CNT=2 /TID=Rn.60820.1 /TIER=ConsEnd /STK=0 /UG=Rn.60820 /UG_TITLE=ESTs BF405754 1396483_at AW434740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434740 /DB_XREF=gi:6966047 /DB_XREF=UI-R-BJ0p-afz-f-02-0-UI.s1 /CLONE=UI-R-BJ0p-afz-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.54208.1 /TIER=ConsEnd /STK=0 /UG=Rn.54208 /UG_TITLE=ESTs AW434740 1396484_at AI511211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511211 /DB_XREF=gi:4416910 /DB_XREF=UI-R-C3-sg-d-06-0-UI.s1 /CLONE=UI-R-C3-sg-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.34652.1 /TIER=ConsEnd /STK=0 /UG=Rn.34652 /UG_TITLE=ESTs AI511211 1396485_at AI705403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI705403 /DB_XREF=gi:4993303 /DB_XREF=UI-R-AC1-xs-d-02-0-UI.s1 /CLONE=UI-R-AC1-xs-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.54137.1 /TIER=ConsEnd /STK=0 /UG=Rn.54137 /UG_TITLE=ESTs AI705403 BTB (POZ) domain containing 10 Btbd10 308890 NM_001014022 0005515 // protein binding // inferred from electronic annotation 1396486_x_at BG377300 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377300 /DB_XREF=gi:13301772 /DB_XREF=UI-R-CU0-bux-g-10-0-UI.s1 /CLONE=UI-R-CU0-bux-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.66479.1 /TIER=ConsEnd /STK=0 /UG=Rn.66479 /UG_TITLE=ESTs BG377300 similar to Homo sapiens fetal lung specific expression~unknown RGD1564162 499421 XR_085736 /// XR_086150 1396487_at BF404419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404419 /DB_XREF=gi:11392394 /DB_XREF=UI-R-CA1-bif-b-01-0-UI.s1 /CLONE=UI-R-CA1-bif-b-01-0-UI /FEA=EST /CNT=5 /TID=Rn.57630.1 /TIER=ConsEnd /STK=5 /UG=Rn.57630 /UG_TITLE=ESTs BF404419 1396488_at BI291411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291411 /DB_XREF=gi:14950924 /DB_XREF=UI-R-CV2-cgp-h-02-0-UI.s1 /CLONE=UI-R-CV2-cgp-h-02-0-UI /FEA=EST /CNT=5 /TID=Rn.79896.1 /TIER=ConsEnd /STK=5 /UG=Rn.79896 /UG_TITLE=ESTs BI291411 1396489_at BF404442 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404442 /DB_XREF=gi:11392417 /DB_XREF=UI-R-CA1-bif-d-04-0-UI.s1 /CLONE=UI-R-CA1-bif-d-04-0-UI /FEA=EST /CNT=5 /TID=Rn.63646.1 /TIER=ConsEnd /STK=5 /UG=Rn.63646 /UG_TITLE=ESTs BF404442 1396490_at BI296616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296616 /DB_XREF=gi:14961218 /DB_XREF=UI-R-CV2-cgt-c-10-0-UI.s1 /CLONE=UI-R-CV2-cgt-c-10-0-UI /FEA=EST /CNT=5 /TID=Rn.79917.1 /TIER=ConsEnd /STK=5 /UG=Rn.79917 /UG_TITLE=ESTs BI296616 1396491_at BF401671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401671 /DB_XREF=gi:11389646 /DB_XREF=UI-R-CA0-bgn-c-11-0-UI.s1 /CLONE=UI-R-CA0-bgn-c-11-0-UI /FEA=EST /CNT=5 /TID=Rn.63634.1 /TIER=ConsEnd /STK=5 /UG=Rn.63634 /UG_TITLE=ESTs BF401671 1396492_at BF399099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399099 /DB_XREF=gi:11384103 /DB_XREF=UI-R-CA1-bja-b-12-0-UI.s1 /CLONE=UI-R-CA1-bja-b-12-0-UI /FEA=EST /CNT=5 /TID=Rn.57313.1 /TIER=ConsEnd /STK=5 /UG=Rn.57313 /UG_TITLE=ESTs BF399099 NFAT activating protein with ITAM motif 1 Nfam1 362966 XM_001077695 /// XM_343297 0007165 // signal transduction // not recorded /// 0023034 // intracellular signaling pathway // not recorded /// 0030183 // B cell differentiation // not recorded /// 0045577 // regulation of B cell differentiation // not recorded /// 0050853 // B cell receptor signaling pathway // not recorded /// 0050861 // positive regulation of B cell receptor signaling pathway // not recorded /// 0051091 // positive regulation of transcription factor activity // not recorded 0009986 // cell surface // not recorded /// 0016021 // integral to membrane // not recorded /// 0045121 // membrane raft // not recorded 0004888 // transmembrane receptor activity // not recorded 1396493_at BF403409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403409 /DB_XREF=gi:11391346 /DB_XREF=UI-R-CA1-biy-m-20-0-UI.s1 /CLONE=UI-R-CA1-biy-m-20-0-UI /FEA=EST /CNT=5 /TID=Rn.64304.1 /TIER=ConsEnd /STK=5 /UG=Rn.64304 /UG_TITLE=ESTs BF403409 1396494_at BF410352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410352 /DB_XREF=gi:11398327 /DB_XREF=UI-R-CA1-bjw-e-02-0-UI.s1 /CLONE=UI-R-CA1-bjw-e-02-0-UI /FEA=EST /CNT=5 /TID=Rn.61672.1 /TIER=ConsEnd /STK=5 /UG=Rn.61672 /UG_TITLE=ESTs BF410352 1396495_at BI300244 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300244 /DB_XREF=gi:14976524 /DB_XREF=UI-R-CV2-cic-f-07-0-UI.s1 /CLONE=UI-R-CV2-cic-f-07-0-UI /FEA=EST /CNT=5 /TID=Rn.76772.1 /TIER=ConsEnd /STK=5 /UG=Rn.76772 /UG_TITLE=ESTs BI300244 1396496_at BE121412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121412 /DB_XREF=gi:8513517 /DB_XREF=UI-R-CA0-bax-e-10-0-UI.s1 /CLONE=UI-R-CA0-bax-e-10-0-UI /FEA=EST /CNT=5 /TID=Rn.53326.1 /TIER=ConsEnd /STK=5 /UG=Rn.53326 /UG_TITLE=ESTs BE121412 1396497_at BE120694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120694 /DB_XREF=gi:8512799 /DB_XREF=UI-R-CA0-bay-e-01-0-UI.s1 /CLONE=UI-R-CA0-bay-e-01-0-UI /FEA=EST /CNT=5 /TID=Rn.60040.1 /TIER=ConsEnd /STK=5 /UG=Rn.60040 /UG_TITLE=ESTs BE120694 1396498_at BF393477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393477 /DB_XREF=gi:11378338 /DB_XREF=UI-R-CA0-bfu-d-02-0-UI.s1 /CLONE=UI-R-CA0-bfu-d-02-0-UI /FEA=EST /CNT=5 /TID=Rn.57880.1 /TIER=ConsEnd /STK=5 /UG=Rn.57880 /UG_TITLE=ESTs BF393477 1396499_at BF403327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403327 /DB_XREF=gi:11391302 /DB_XREF=UI-R-CA1-biy-e-22-0-UI.s1 /CLONE=UI-R-CA1-biy-e-22-0-UI /FEA=EST /CNT=5 /TID=Rn.59351.1 /TIER=ConsEnd /STK=5 /UG=Rn.59351 /UG_TITLE=ESTs BF403327 hypothetical protein LOC680590 LOC680590 680590 NR_036618 /// XM_001057907 /// XM_001061653 1396500_at BE120381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120381 /DB_XREF=gi:8512486 /DB_XREF=UI-R-CA0-baq-g-05-0-UI.s1 /CLONE=UI-R-CA0-baq-g-05-0-UI /FEA=EST /CNT=5 /TID=Rn.51400.1 /TIER=ConsEnd /STK=5 /UG=Rn.51400 /UG_TITLE=ESTs BE120381 1396501_at AW528005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528005 /DB_XREF=gi:7170419 /DB_XREF=UI-R-BT1-akg-f-03-0-UI.s1 /CLONE=UI-R-BT1-akg-f-03-0-UI /FEA=EST /CNT=5 /TID=Rn.46735.1 /TIER=ConsEnd /STK=5 /UG=Rn.46735 /UG_TITLE=ESTs AW528005 alveolar soft part sarcoma chromosome region, candidate 1 (human) Aspscr1 691026 XM_001076577 /// XM_002724585 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0042593 // glucose homeostasis // not recorded /// 0046324 // regulation of glucose import // inferred from electronic annotation /// 0046324 // regulation of glucose import // not recorded 0000300 // peripheral to membrane of membrane fraction // inferred from electronic annotation /// 0000300 // peripheral to membrane of membrane fraction // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0009898 // internal side of plasma membrane // inferred from electronic annotation /// 0009898 // internal side of plasma membrane // not recorded /// 0012506 // vesicle membrane // inferred from electronic annotation /// 0012506 // vesicle membrane // not recorded /// 0019898 // extrinsic to membrane // inferred from electronic annotation /// 0019898 // extrinsic to membrane // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396502_at BF405162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405162 /DB_XREF=gi:11393137 /DB_XREF=UI-R-CA1-biq-e-09-0-UI.s1 /CLONE=UI-R-CA1-biq-e-09-0-UI /FEA=EST /CNT=5 /TID=Rn.61684.1 /TIER=ConsEnd /STK=5 /UG=Rn.61684 /UG_TITLE=ESTs BF405162 1396503_at BF405056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405056 /DB_XREF=gi:11393031 /DB_XREF=UI-R-CA1-bip-b-01-0-UI.s1 /CLONE=UI-R-CA1-bip-b-01-0-UI /FEA=EST /CNT=5 /TID=Rn.61701.1 /TIER=ConsEnd /STK=5 /UG=Rn.61701 /UG_TITLE=ESTs BF405056 1396504_at BE120185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120185 /DB_XREF=gi:8512290 /DB_XREF=UI-R-CA0-bap-e-09-0-UI.s1 /CLONE=UI-R-CA0-bap-e-09-0-UI /FEA=EST /CNT=5 /TID=Rn.52212.1 /TIER=ConsEnd /STK=5 /UG=Rn.52212 /UG_TITLE=ESTs BE120185 1396505_at BE113909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113909 /DB_XREF=gi:8506014 /DB_XREF=UI-R-CA0-axe-h-04-0-UI.s1 /CLONE=UI-R-CA0-axe-h-04-0-UI /FEA=EST /CNT=5 /TID=Rn.60142.1 /TIER=ConsEnd /STK=5 /UG=Rn.60142 /UG_TITLE=ESTs BE113909 1396506_at AT006336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AT006336 /DB_XREF=gi:15717641 /DB_XREF=AT006336 /CLONE=152-P7-1-4 /FEA=EST /CNT=5 /TID=Rn.80929.1 /TIER=ConsEnd /STK=5 /UG=Rn.80929 /UG_TITLE=ESTs AT006336 1396507_at BE102411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102411 /DB_XREF=gi:8494510 /DB_XREF=UI-R-BT1-aqm-c-11-0-UI.s1 /CLONE=UI-R-BT1-aqm-c-11-0-UI /FEA=EST /CNT=5 /TID=Rn.49107.1 /TIER=ConsEnd /STK=4 /UG=Rn.49107 /UG_TITLE=ESTs BE102411 1396508_at BF392880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392880 /DB_XREF=gi:11377739 /DB_XREF=UI-R-CA0-bfq-c-11-0-UI.s1 /CLONE=UI-R-CA0-bfq-c-11-0-UI /FEA=EST /CNT=5 /TID=Rn.57746.1 /TIER=ConsEnd /STK=4 /UG=Rn.57746 /UG_TITLE=ESTs BF392880 1396509_at BE096132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096132 /DB_XREF=gi:8487063 /DB_XREF=UI-R-BU0-apj-d-06-0-UI.s1 /CLONE=UI-R-BU0-apj-d-06-0-UI /FEA=EST /CNT=5 /TID=Rn.49195.1 /TIER=ConsEnd /STK=4 /UG=Rn.49195 /UG_TITLE=ESTs BE096132 transmembrane protein 132E Tmem132e 287564 NM_001134410 1396510_at BF403278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403278 /DB_XREF=gi:11391253 /DB_XREF=UI-R-CA1-biy-k-23-0-UI.s1 /CLONE=UI-R-CA1-biy-k-23-0-UI /FEA=EST /CNT=5 /TID=Rn.59220.1 /TIER=ConsEnd /STK=4 /UG=Rn.59220 /UG_TITLE=ESTs BF403278 1396511_at AI763815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763815 /DB_XREF=gi:5209750 /DB_XREF=UI-R-Y0-acs-d-02-0-UI.s1 /CLONE=UI-R-Y0-acs-d-02-0-UI /FEA=EST /CNT=5 /TID=Rn.41386.1 /TIER=ConsEnd /STK=4 /UG=Rn.41386 /UG_TITLE=ESTs AI763815 1396512_at BF393192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393192 /DB_XREF=gi:11378052 /DB_XREF=UI-R-CA0-bfp-h-02-0-UI.s1 /CLONE=UI-R-CA0-bfp-h-02-0-UI /FEA=EST /CNT=5 /TID=Rn.53310.1 /TIER=ConsEnd /STK=4 /UG=Rn.53310 /UG_TITLE=ESTs BF393192 1396513_at AI716061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716061 /DB_XREF=gi:5033314 /DB_XREF=UI-R-Y0-acd-e-10-0-UI.s1 /CLONE=UI-R-Y0-acd-e-10-0-UI /FEA=EST /CNT=5 /TID=Rn.26689.1 /TIER=ConsEnd /STK=4 /UG=Rn.26689 /UG_TITLE=ESTs AI716061 1396514_at BF404942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404942 /DB_XREF=gi:11392917 /DB_XREF=UI-R-CA1-bij-e-10-0-UI.s1 /CLONE=UI-R-CA1-bij-e-10-0-UI /FEA=EST /CNT=4 /TID=Rn.60627.1 /TIER=ConsEnd /STK=4 /UG=Rn.60627 /UG_TITLE=ESTs BF404942 1396515_at BF404432 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404432 /DB_XREF=gi:11392407 /DB_XREF=UI-R-CA1-bif-c-04-0-UI.s1 /CLONE=UI-R-CA1-bif-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.59488.1 /TIER=ConsEnd /STK=4 /UG=Rn.59488 /UG_TITLE=ESTs BF404432 1396516_at BE120213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120213 /DB_XREF=gi:8512318 /DB_XREF=UI-R-CA0-bap-h-03-0-UI.s1 /CLONE=UI-R-CA0-bap-h-03-0-UI /FEA=EST /CNT=4 /TID=Rn.51493.1 /TIER=ConsEnd /STK=4 /UG=Rn.51493 /UG_TITLE=ESTs BE120213 1396517_at AW533284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533284 /DB_XREF=gi:7175698 /DB_XREF=UI-R-BU0-anf-a-12-0-UI.s1 /CLONE=UI-R-BU0-anf-a-12-0-UI /FEA=EST /CNT=4 /TID=Rn.47430.1 /TIER=ConsEnd /STK=4 /UG=Rn.47430 /UG_TITLE=ESTs AW533284 Similar to novel protein RGD1563533 313713 XM_002726658 /// XM_002729564 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1396518_at BF394059 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394059 /DB_XREF=gi:11378923 /DB_XREF=UI-R-CA0-bgy-e-03-0-UI.s1 /CLONE=UI-R-CA0-bgy-e-03-0-UI /FEA=EST /CNT=4 /TID=Rn.53131.1 /TIER=ConsEnd /STK=4 /UG=Rn.53131 /UG_TITLE=ESTs BF394059 1396519_at BF399103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399103 /DB_XREF=gi:11384107 /DB_XREF=UI-R-CA1-bja-d-10-0-UI.s1 /CLONE=UI-R-CA1-bja-d-10-0-UI /FEA=EST /CNT=4 /TID=Rn.59231.1 /TIER=ConsEnd /STK=4 /UG=Rn.59231 /UG_TITLE=ESTs BF399103 1396520_at BF403354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403354 /DB_XREF=gi:11391329 /DB_XREF=UI-R-CA1-biy-k-06-0-UI.s1 /CLONE=UI-R-CA1-biy-k-06-0-UI /FEA=EST /CNT=4 /TID=Rn.59229.1 /TIER=ConsEnd /STK=4 /UG=Rn.59229 /UG_TITLE=ESTs BF403354 1396521_at BF396135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396135 /DB_XREF=gi:11381107 /DB_XREF=UI-R-CA1-bcb-g-01-0-UI.s1 /CLONE=UI-R-CA1-bcb-g-01-0-UI /FEA=EST /CNT=4 /TID=Rn.57496.1 /TIER=ConsEnd /STK=4 /UG=Rn.57496 /UG_TITLE=ESTs, Weakly similar to steroidogenic acute regulatory protein (Rattus norvegicus) (R.norvegicus) BF396135 StAR-related lipid transfer (START) domain containing 4 Stard4 291699 NM_001106159 1396522_at BF409284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409284 /DB_XREF=gi:11397259 /DB_XREF=UI-R-CA1-ble-c-03-0-UI.s1 /CLONE=UI-R-CA1-ble-c-03-0-UI /FEA=EST /CNT=4 /TID=Rn.61705.1 /TIER=ConsEnd /STK=4 /UG=Rn.61705 /UG_TITLE=ESTs BF409284 1396523_at BF409879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409879 /DB_XREF=gi:11397854 /DB_XREF=UI-R-CA1-bjr-h-04-0-UI.s1 /CLONE=UI-R-CA1-bjr-h-04-0-UI /FEA=EST /CNT=4 /TID=Rn.64375.1 /TIER=ConsEnd /STK=4 /UG=Rn.64375 /UG_TITLE=ESTs BF409879 1396524_at BF410736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410736 /DB_XREF=gi:11398711 /DB_XREF=UI-R-CA0-bmc-c-08-0-UI.s1 /CLONE=UI-R-CA0-bmc-c-08-0-UI /FEA=EST /CNT=4 /TID=Rn.62482.1 /TIER=ConsEnd /STK=4 /UG=Rn.62482 /UG_TITLE=ESTs BF410736 1396525_at BE110289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110289 /DB_XREF=gi:8502394 /DB_XREF=UI-R-CA0-axl-c-04-0-UI.s1 /CLONE=UI-R-CA0-axl-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.61745.1 /TIER=ConsEnd /STK=4 /UG=Rn.61745 /UG_TITLE=ESTs BE110289 1396526_at BF410339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410339 /DB_XREF=gi:11398314 /DB_XREF=UI-R-CA1-bjw-c-12-0-UI.s1 /CLONE=UI-R-CA1-bjw-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.61689.1 /TIER=ConsEnd /STK=4 /UG=Rn.61689 /UG_TITLE=ESTs BF410339 1396527_at BF399373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399373 /DB_XREF=gi:11384377 /DB_XREF=UI-R-CA1-bjb-k-22-0-UI.s1 /CLONE=UI-R-CA1-bjb-k-22-0-UI /FEA=EST /CNT=4 /TID=Rn.60363.1 /TIER=ConsEnd /STK=4 /UG=Rn.60363 /UG_TITLE=ESTs BF399373 1396528_at BF404786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404786 /DB_XREF=gi:11392761 /DB_XREF=UI-R-CA1-bid-f-03-0-UI.s1 /CLONE=UI-R-CA1-bid-f-03-0-UI /FEA=EST /CNT=4 /TID=Rn.60783.1 /TIER=ConsEnd /STK=4 /UG=Rn.60783 /UG_TITLE=ESTs BF404786 1396529_at BF415512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415512 /DB_XREF=gi:11403501 /DB_XREF=UI-R-CA1-bjz-h-07-0-UI.s1 /CLONE=UI-R-CA1-bjz-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.64350.1 /TIER=ConsEnd /STK=4 /UG=Rn.64350 /UG_TITLE=ESTs BF415512 1396530_at BE120509 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120509 /DB_XREF=gi:8512614 /DB_XREF=UI-R-CA0-bat-c-09-0-UI.s1 /CLONE=UI-R-CA0-bat-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.62326.1 /TIER=ConsEnd /STK=4 /UG=Rn.62326 /UG_TITLE=ESTs BE120509 1396531_at BF416287 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416287 /DB_XREF=gi:11404276 /DB_XREF=UI-R-CA0-bkr-f-10-0-UI.s1 /CLONE=UI-R-CA0-bkr-f-10-0-UI /FEA=EST /CNT=4 /TID=Rn.53190.1 /TIER=ConsEnd /STK=4 /UG=Rn.53190 /UG_TITLE=ESTs BF416287 1396532_at BG662870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG662870 /DB_XREF=gi:13884792 /DB_XREF=DRA04F06 /CLONE=DRA04F06 /FEA=EST /CNT=4 /TID=Rn.76521.1 /TIER=ConsEnd /STK=4 /UG=Rn.76521 /UG_TITLE=ESTs BG662870 1396533_at BF405339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405339 /DB_XREF=gi:11393314 /DB_XREF=UI-R-CA1-bit-a-04-0-UI.s1 /CLONE=UI-R-CA1-bit-a-04-0-UI /FEA=EST /CNT=4 /TID=Rn.61598.1 /TIER=ConsEnd /STK=4 /UG=Rn.61598 /UG_TITLE=ESTs BF405339 1396534_at BF401551 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401551 /DB_XREF=gi:11389526 /DB_XREF=UI-R-CA0-bgl-h-09-0-UI.s1 /CLONE=UI-R-CA0-bgl-h-09-0-UI /FEA=EST /CNT=4 /TID=Rn.59824.1 /TIER=ConsEnd /STK=4 /UG=Rn.59824 /UG_TITLE=ESTs BF401551 1396535_at BF388500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388500 /DB_XREF=gi:11373324 /DB_XREF=UI-R-CA1-bda-c-05-0-UI.s1 /CLONE=UI-R-CA1-bda-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.63089.1 /TIER=ConsEnd /STK=4 /UG=Rn.63089 /UG_TITLE=ESTs BF388500 1396536_at BF399987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399987 /DB_XREF=gi:11384998 /DB_XREF=UI-R-CA1-bia-c-12-0-UI.s1 /CLONE=UI-R-CA1-bia-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.59486.1 /TIER=ConsEnd /STK=4 /UG=Rn.59486 /UG_TITLE=ESTs BF399987 Glycosyltransferase-like 1B Gyltl1b 311202 NM_199107 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1396537_at BE121110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121110 /DB_XREF=gi:8513215 /DB_XREF=UI-R-CA0-bau-b-08-0-UI.s1 /CLONE=UI-R-CA0-bau-b-08-0-UI /FEA=EST /CNT=4 /TID=Rn.63644.1 /TIER=ConsEnd /STK=4 /UG=Rn.63644 /UG_TITLE=ESTs BE121110 1396538_at BF403765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403765 /DB_XREF=gi:11391740 /DB_XREF=UI-R-CA1-bjc-j-04-0-UI.s1 /CLONE=UI-R-CA1-bjc-j-04-0-UI /FEA=EST /CNT=4 /TID=Rn.59559.1 /TIER=ConsEnd /STK=4 /UG=Rn.59559 /UG_TITLE=ESTs BF403765 CREB regulated transcription coactivator 3 Crtc3 365297 XM_001066604 /// XM_344915 1396539_at BE119221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119221 /DB_XREF=gi:8511326 /DB_XREF=UI-R-CA0-azz-h-06-0-UI.s1 /CLONE=UI-R-CA0-azz-h-06-0-UI /FEA=EST /CNT=4 /TID=Rn.53173.1 /TIER=ConsEnd /STK=4 /UG=Rn.53173 /UG_TITLE=ESTs BE119221 1396540_at BF419647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419647 /DB_XREF=gi:11407641 /DB_XREF=UI-R-CA0-bpe-f-07-0-UI.s1 /CLONE=UI-R-CA0-bpe-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.63593.1 /TIER=ConsEnd /STK=4 /UG=Rn.63593 /UG_TITLE=ESTs BF419647 1396541_at BI300487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300487 /DB_XREF=gi:14976767 /DB_XREF=UI-R-CV2-cif-e-08-0-UI.s1 /CLONE=UI-R-CV2-cif-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.76757.1 /TIER=ConsEnd /STK=4 /UG=Rn.76757 /UG_TITLE=ESTs BI300487 jumonji domain containing 1C Jmjd1c 171120 NM_001191719 /// XM_001080424 /// XM_228122 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396542_at BF393011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393011 /DB_XREF=gi:11377871 /DB_XREF=UI-R-CA0-bfr-h-01-0-UI.s1 /CLONE=UI-R-CA0-bfr-h-01-0-UI /FEA=EST /CNT=4 /TID=Rn.58018.1 /TIER=ConsEnd /STK=4 /UG=Rn.58018 /UG_TITLE=ESTs BF393011 1396543_at BE099968 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099968 /DB_XREF=gi:8491852 /DB_XREF=UI-R-BJ1-atr-b-12-0-UI.s1 /CLONE=UI-R-BJ1-atr-b-12-0-UI /FEA=EST /CNT=4 /TID=Rn.51975.1 /TIER=ConsEnd /STK=4 /UG=Rn.51975 /UG_TITLE=ESTs, Highly similar to NICA_MOUSE NICASTRIN PRECURSOR (M.musculus) BE099968 nicastrin Ncstn 289231 NM_174864 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0006509 // membrane protein ectodomain proteolysis // inferred from sequence or structural similarity /// 0006915 // apoptosis // not recorded /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0016485 // protein processing // inferred from expression pattern /// 0016485 // protein processing // not recorded /// 0016485 // protein processing // inferred from sequence or structural similarity /// 0016485 // protein processing // inferred from electronic annotation /// 0031293 // membrane protein intracellular domain proteolysis // not recorded /// 0043085 // positive regulation of catalytic activity // not recorded /// 0043085 // positive regulation of catalytic activity // inferred from sequence or structural similarity 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005765 // lysosomal membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from direct assay 1396544_at BF399557 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399557 /DB_XREF=gi:11384565 /DB_XREF=UI-R-CA1-bjb-p-16-0-UI.s1 /CLONE=UI-R-CA1-bjb-p-16-0-UI /FEA=EST /CNT=4 /TID=Rn.59411.1 /TIER=ConsEnd /STK=4 /UG=Rn.59411 /UG_TITLE=ESTs BF399557 R-spondin 3 homolog (Xenopus laevis) Rspo3 498997 NM_001100990 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060670 // branching involved in embryonic placenta morphogenesis // inferred from electronic annotation /// 0060670 // branching involved in embryonic placenta morphogenesis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005109 // frizzled binding // inferred from electronic annotation /// 0005109 // frizzled binding // not recorded /// 0008201 // heparin binding // inferred from electronic annotation /// 0008201 // heparin binding // not recorded 1396545_at BF403889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403889 /DB_XREF=gi:11391864 /DB_XREF=UI-R-CA1-bjd-b-09-0-UI.s1 /CLONE=UI-R-CA1-bjd-b-09-0-UI /FEA=EST /CNT=4 /TID=Rn.60384.1 /TIER=ConsEnd /STK=4 /UG=Rn.60384 /UG_TITLE=ESTs BF403889 1396546_at BE119757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119757 /DB_XREF=gi:8511862 /DB_XREF=UI-R-CA0-bai-f-07-0-UI.s1 /CLONE=UI-R-CA0-bai-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.53043.1 /TIER=ConsEnd /STK=4 /UG=Rn.53043 /UG_TITLE=ESTs BE119757 1396547_at BI299163 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299163 /DB_XREF=gi:14975443 /DB_XREF=UI-R-CV2-chr-h-11-0-UI.s1 /CLONE=UI-R-CV2-chr-h-11-0-UI /FEA=EST /CNT=4 /TID=Rn.79895.1 /TIER=ConsEnd /STK=4 /UG=Rn.79895 /UG_TITLE=ESTs BI299163 1396548_at BF388530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388530 /DB_XREF=gi:11373354 /DB_XREF=UI-R-CA1-bda-f-01-0-UI.s1 /CLONE=UI-R-CA1-bda-f-01-0-UI /FEA=EST /CNT=4 /TID=Rn.56771.1 /TIER=ConsEnd /STK=4 /UG=Rn.56771 /UG_TITLE=ESTs BF388530 1396549_at BG153308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG153308 /DB_XREF=gi:12665338 /DB_XREF=nag12a12.x1 /CLONE=IMAGE:4175903 /FEA=EST /CNT=4 /TID=Rn.65586.1 /TIER=ConsEnd /STK=4 /UG=Rn.65586 /UG_TITLE=ESTs, Highly similar to EF2 RAT ELONGATION FACTOR 2 (R.norvegicus) BG153308 eukaryotic translation elongation factor 2 Eef2 29565 NM_017245 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0006414 // translational elongation // traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // traceable author statement /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1396550_at BG672529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672529 /DB_XREF=gi:13894628 /DB_XREF=DRNCLA07 /CLONE=DRNCLA07 /FEA=EST /CNT=4 /TID=Rn.74156.1 /TIER=ConsEnd /STK=4 /UG=Rn.74156 /UG_TITLE=ESTs BG672529 1396551_at AW535601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535601 /DB_XREF=gi:7178015 /DB_XREF=UI-R-C4-aly-g-03-0-UI.s1 /CLONE=UI-R-C4-aly-g-03-0-UI /FEA=EST /CNT=4 /TID=Rn.47493.1 /TIER=ConsEnd /STK=4 /UG=Rn.47493 /UG_TITLE=ESTs AW535601 1396552_s_at BF402505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402505 /DB_XREF=gi:11390480 /DB_XREF=UI-R-CA0-bhr-b-07-0-UI.s1 /CLONE=UI-R-CA0-bhr-b-07-0-UI /FEA=EST /CNT=4 /TID=Rn.58017.1 /TIER=ConsEnd /STK=4 /UG=Rn.58017 /UG_TITLE=ESTs, Weakly similar to T14271 Doc4 protein, stress-induced - mouse (M.musculus) BF402505 odz, odd Oz/ten-m homolog 2 (Drosophila) Odz2 117242 NM_020088 0007165 // signal transduction // inferred from electronic annotation /// 0007417 // central nervous system development // traceable author statement 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004180 // carboxypeptidase activity // inferred from electronic annotation 1396553_at BF409852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409852 /DB_XREF=gi:11397827 /DB_XREF=UI-R-CA1-bjr-e-08-0-UI.s1 /CLONE=UI-R-CA1-bjr-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.61505.1 /TIER=ConsEnd /STK=4 /UG=Rn.61505 /UG_TITLE=ESTs, Highly similar to APMC_HUMAN PROTEIN APMCF1 (H.sapiens) BF409852 1396554_at BF405511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405511 /DB_XREF=gi:11393486 /DB_XREF=UI-R-CA1-biu-d-01-0-UI.s1 /CLONE=UI-R-CA1-biu-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.62839.1 /TIER=ConsEnd /STK=4 /UG=Rn.62839 /UG_TITLE=ESTs BF405511 1396555_at BF405331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405331 /DB_XREF=gi:11393306 /DB_XREF=UI-R-CA1-biw-o-13-0-UI.s1 /CLONE=UI-R-CA1-biw-o-13-0-UI /FEA=EST /CNT=4 /TID=Rn.60436.1 /TIER=ConsEnd /STK=4 /UG=Rn.60436 /UG_TITLE=ESTs BF405331 1396556_at BF413366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413366 /DB_XREF=gi:11401355 /DB_XREF=UI-R-CA0-boe-c-04-0-UI.s1 /CLONE=UI-R-CA0-boe-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.52205.1 /TIER=ConsEnd /STK=4 /UG=Rn.52205 /UG_TITLE=ESTs BF413366 1396557_at BE119958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119958 /DB_XREF=gi:8512063 /DB_XREF=UI-R-CA0-bao-a-02-0-UI.s1 /CLONE=UI-R-CA0-bao-a-02-0-UI /FEA=EST /CNT=4 /TID=Rn.52319.1 /TIER=ConsEnd /STK=4 /UG=Rn.52319 /UG_TITLE=ESTs, Moderately similar to I49692 beta-glucuronidase precursor - mouse (M.musculus) BE119958 1396558_at BF392155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392155 /DB_XREF=gi:11377012 /DB_XREF=UI-R-CA0-bfe-h-04-0-UI.s1 /CLONE=UI-R-CA0-bfe-h-04-0-UI /FEA=EST /CNT=4 /TID=Rn.57757.1 /TIER=ConsEnd /STK=4 /UG=Rn.57757 /UG_TITLE=ESTs BF392155 1396559_at BF396566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396566 /DB_XREF=gi:11381540 /DB_XREF=UI-R-BS2-bdz-f-03-0-UI.s1 /CLONE=UI-R-BS2-bdz-f-03-0-UI /FEA=EST /CNT=4 /TID=Rn.58781.1 /TIER=ConsEnd /STK=4 /UG=Rn.58781 /UG_TITLE=ESTs BF396566 1396560_at BF399126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399126 /DB_XREF=gi:11384130 /DB_XREF=UI-R-CA1-bja-l-12-0-UI.s1 /CLONE=UI-R-CA1-bja-l-12-0-UI /FEA=EST /CNT=4 /TID=Rn.59273.1 /TIER=ConsEnd /STK=4 /UG=Rn.59273 /UG_TITLE=ESTs BF399126 1396561_x_at BF409296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409296 /DB_XREF=gi:11397271 /DB_XREF=UI-R-CA1-ble-d-03-0-UI.s1 /CLONE=UI-R-CA1-ble-d-03-0-UI /FEA=EST /CNT=4 /TID=Rn.61305.1 /TIER=ConsEnd /STK=4 /UG=Rn.61305 /UG_TITLE=ESTs, Highly similar to A55731 GPI-anchor biosynthesis protein PIG-A - mouse (M.musculus) BF409296 phosphatidylinositol glycan anchor biosynthesis, class A Piga 363464 NM_001108816 0006506 // GPI anchor biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0016254 // preassembly of GPI anchor in ER membrane // not recorded 0000506 // glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded 0005515 // protein binding // not recorded 1396562_at BF409832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409832 /DB_XREF=gi:11397807 /DB_XREF=UI-R-CA1-bjr-c-11-0-UI.s1 /CLONE=UI-R-CA1-bjr-c-11-0-UI /FEA=EST /CNT=4 /TID=Rn.61498.1 /TIER=ConsEnd /STK=4 /UG=Rn.61498 /UG_TITLE=ESTs BF409832 1396563_at BF405036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405036 /DB_XREF=gi:11393011 /DB_XREF=UI-R-CA1-bio-g-12-0-UI.s1 /CLONE=UI-R-CA1-bio-g-12-0-UI /FEA=EST /CNT=4 /TID=Rn.62843.1 /TIER=ConsEnd /STK=4 /UG=Rn.62843 /UG_TITLE=ESTs BF405036 1396564_at BF391910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391910 /DB_XREF=gi:11376766 /DB_XREF=UI-R-CA0-bfh-a-06-0-UI.s1 /CLONE=UI-R-CA0-bfh-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.62912.1 /TIER=ConsEnd /STK=4 /UG=Rn.62912 /UG_TITLE=ESTs BF391910 1396565_at BF405034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405034 /DB_XREF=gi:11393009 /DB_XREF=UI-R-CA1-bio-g-10-0-UI.s1 /CLONE=UI-R-CA1-bio-g-10-0-UI /FEA=EST /CNT=4 /TID=Rn.63334.1 /TIER=ConsEnd /STK=4 /UG=Rn.63334 /UG_TITLE=ESTs, Moderately similar to T14777 hypothetical protein DKFZp434N061.1 (H.sapiens) BF405034 RGD1565616 RGD1565616 499891 NM_001109206 1396566_at BF394827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394827 /DB_XREF=gi:11379785 /DB_XREF=UI-R-CA0-bfz-d-08-0-UI.s1 /CLONE=UI-R-CA0-bfz-d-08-0-UI /FEA=EST /CNT=4 /TID=Rn.57959.1 /TIER=ConsEnd /STK=4 /UG=Rn.57959 /UG_TITLE=ESTs BF394827 1396567_at BE119808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119808 /DB_XREF=gi:8511913 /DB_XREF=UI-R-CA0-ban-c-06-0-UI.s1 /CLONE=UI-R-CA0-ban-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.60099.1 /TIER=ConsEnd /STK=4 /UG=Rn.60099 /UG_TITLE=ESTs BE119808 1396568_at BF405624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405624 /DB_XREF=gi:11393599 /DB_XREF=UI-R-CA1-bix-m-22-0-UI.s1 /CLONE=UI-R-CA1-bix-m-22-0-UI /FEA=EST /CNT=4 /TID=Rn.60342.1 /TIER=ConsEnd /STK=4 /UG=Rn.60342 /UG_TITLE=ESTs BF405624 1396569_at AI716045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716045 /DB_XREF=gi:5033298 /DB_XREF=UI-R-Y0-acd-d-04-0-UI.s1 /CLONE=UI-R-Y0-acd-d-04-0-UI /FEA=EST /CNT=4 /TID=Rn.41202.1 /TIER=ConsEnd /STK=4 /UG=Rn.41202 /UG_TITLE=ESTs AI716045 1396570_at BF393250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393250 /DB_XREF=gi:11378110 /DB_XREF=UI-R-CA0-bfs-e-12-0-UI.s1 /CLONE=UI-R-CA0-bfs-e-12-0-UI /FEA=EST /CNT=4 /TID=Rn.57722.1 /TIER=ConsEnd /STK=4 /UG=Rn.57722 /UG_TITLE=ESTs BF393250 1396571_at BF418055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418055 /DB_XREF=gi:11406044 /DB_XREF=UI-R-CA1-blv-h-06-0-UI.s1 /CLONE=UI-R-CA1-blv-h-06-0-UI /FEA=EST /CNT=4 /TID=Rn.63347.1 /TIER=ConsEnd /STK=4 /UG=Rn.63347 /UG_TITLE=ESTs BF418055 1396572_at BE107002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107002 /DB_XREF=gi:8499087 /DB_XREF=UI-R-BT1-ass-d-12-0-UI.s1 /CLONE=UI-R-BT1-ass-d-12-0-UI /FEA=EST /CNT=6 /TID=Rn.64277.1 /TIER=ConsEnd /STK=3 /UG=Rn.64277 /UG_TITLE=ESTs BE107002 similar to TSG118.1 RGD1565096 499255 NM_001134611 1396573_at BF409929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409929 /DB_XREF=gi:11397904 /DB_XREF=UI-R-CA1-bjy-e-01-0-UI.s1 /CLONE=UI-R-CA1-bjy-e-01-0-UI /FEA=EST /CNT=4 /TID=Rn.64340.1 /TIER=ConsEnd /STK=3 /UG=Rn.64340 /UG_TITLE=ESTs BF409929 1396574_at AW523624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523624 /DB_XREF=gi:7166009 /DB_XREF=UI-R-BO0-aic-b-12-0-UI.s1 /CLONE=UI-R-BO0-aic-b-12-0-UI /FEA=EST /CNT=4 /TID=Rn.45692.1 /TIER=ConsEnd /STK=3 /UG=Rn.45692 /UG_TITLE=ESTs AW523624 Hypothetical protein LOC685233 LOC685233 685233 XM_001062937 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1396575_at AI576265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576265 /DB_XREF=gi:4560641 /DB_XREF=UI-R-Y0-vb-b-03-0-UI.s1 /CLONE=UI-R-Y0-vb-b-03-0-UI /FEA=EST /CNT=4 /TID=Rn.39114.1 /TIER=ConsEnd /STK=3 /UG=Rn.39114 /UG_TITLE=ESTs, Weakly similar to I38100 rho-GTPase-activating protein 4 (H.sapiens) AI576265 Rho GTPase activating protein 20 Arhgap20 367085 NM_213629 0007165 // signal transduction // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // traceable author statement 0005622 // intracellular // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0017048 // Rho GTPase binding // traceable author statement 1396576_at AW527978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527978 /DB_XREF=gi:7170392 /DB_XREF=UI-R-BT1-akg-c-11-0-UI.s1 /CLONE=UI-R-BT1-akg-c-11-0-UI /FEA=EST /CNT=4 /TID=Rn.46727.1 /TIER=ConsEnd /STK=3 /UG=Rn.46727 /UG_TITLE=ESTs AW527978 1396577_at AI548703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548703 /DB_XREF=gi:4466191 /DB_XREF=UI-R-C3-tw-c-03-0-UI.s1 /CLONE=UI-R-C3-tw-c-03-0-UI /FEA=EST /CNT=4 /TID=Rn.43883.1 /TIER=ConsEnd /STK=3 /UG=Rn.43883 /UG_TITLE=ESTs AI548703 1396578_at AI717173 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717173 /DB_XREF=gi:5034429 /DB_XREF=UI-R-Y0-acm-a-04-0-UI.s1 /CLONE=UI-R-Y0-acm-a-04-0-UI /FEA=EST /CNT=4 /TID=Rn.26753.1 /TIER=ConsEnd /STK=3 /UG=Rn.26753 /UG_TITLE=ESTs AI717173 1396579_at BF415619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415619 /DB_XREF=gi:11403608 /DB_XREF=UI-R-CA1-bkb-e-03-0-UI.s1 /CLONE=UI-R-CA1-bkb-e-03-0-UI /FEA=EST /CNT=4 /TID=Rn.62761.1 /TIER=ConsEnd /STK=3 /UG=Rn.62761 /UG_TITLE=ESTs, Weakly similar to S21976 probable RNA-directed DNA polymerase (R.norvegicus) BF415619 1396580_at AW533943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533943 /DB_XREF=gi:7176317 /DB_XREF=UI-R-C4-alw-e-02-0-UI.s1 /CLONE=UI-R-C4-alw-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.48201.1 /TIER=ConsEnd /STK=3 /UG=Rn.48201 /UG_TITLE=ESTs AW533943 1396581_at BE103137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103137 /DB_XREF=gi:8495236 /DB_XREF=UI-R-BT1-aqx-a-04-0-UI.s1 /CLONE=UI-R-BT1-aqx-a-04-0-UI /FEA=EST /CNT=4 /TID=Rn.47129.1 /TIER=ConsEnd /STK=3 /UG=Rn.47129 /UG_TITLE=ESTs BE103137 SCY1-like 2 (S. cerevisiae) Scyl2 314717 NM_001191780 /// XM_001076749 /// XM_235050 0006468 // protein phosphorylation // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1396582_at BE120655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120655 /DB_XREF=gi:8512760 /DB_XREF=UI-R-CA0-bay-a-06-0-UI.s1 /CLONE=UI-R-CA0-bay-a-06-0-UI /FEA=EST /CNT=4 /TID=Rn.62388.1 /TIER=ConsEnd /STK=3 /UG=Rn.62388 /UG_TITLE=ESTs BE120655 1396583_at AW531808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531808 /DB_XREF=gi:7174222 /DB_XREF=UI-R-C4-akz-c-12-0-UI.s1 /CLONE=UI-R-C4-akz-c-12-0-UI /FEA=EST /CNT=4 /TID=Rn.47504.1 /TIER=ConsEnd /STK=3 /UG=Rn.47504 /UG_TITLE=ESTs AW531808 1396584_at AI764405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764405 /DB_XREF=gi:5210388 /DB_XREF=UI-R-Y0-abk-a-12-0-UI.s1 /CLONE=UI-R-Y0-abk-a-12-0-UI /FEA=EST /CNT=4 /TID=Rn.41813.1 /TIER=ConsEnd /STK=3 /UG=Rn.41813 /UG_TITLE=ESTs AI764405 poliovirus receptor-related 4 Pvrl4 498281 NM_001109076 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1396585_at BF392430 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392430 /DB_XREF=gi:11377287 /DB_XREF=UI-R-CA0-bfj-b-05-0-UI.s1 /CLONE=UI-R-CA0-bfj-b-05-0-UI /FEA=EST /CNT=4 /TID=Rn.57824.1 /TIER=ConsEnd /STK=3 /UG=Rn.57824 /UG_TITLE=ESTs BF392430 1396586_at AI764632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764632 /DB_XREF=gi:5210567 /DB_XREF=UI-R-Y0-abw-c-04-0-UI.s2 /CLONE=UI-R-Y0-abw-c-04-0-UI /FEA=EST /CNT=4 /TID=Rn.38878.1 /TIER=ConsEnd /STK=3 /UG=Rn.38878 /UG_TITLE=ESTs AI764632 1396587_at AI576181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576181 /DB_XREF=gi:4560557 /DB_XREF=UI-R-Y0-ux-a-05-0-UI.s1 /CLONE=UI-R-Y0-ux-a-05-0-UI /FEA=EST /CNT=4 /TID=Rn.38887.1 /TIER=ConsEnd /STK=3 /UG=Rn.38887 /UG_TITLE=ESTs AI576181 1396588_at BF405168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405168 /DB_XREF=gi:11393143 /DB_XREF=UI-R-CA1-biq-f-04-0-UI.s1 /CLONE=UI-R-CA1-biq-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.59561.1 /TIER=ConsEnd /STK=3 /UG=Rn.59561 /UG_TITLE=ESTs BF405168 1396589_at BF404443 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404443 /DB_XREF=gi:11392418 /DB_XREF=UI-R-CA1-bif-d-05-0-UI.s1 /CLONE=UI-R-CA1-bif-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.60504.1 /TIER=ConsEnd /STK=3 /UG=Rn.60504 /UG_TITLE=ESTs BF404443 1396590_at BF404407 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404407 /DB_XREF=gi:11392382 /DB_XREF=UI-R-CA1-bie-h-05-0-UI.s1 /CLONE=UI-R-CA1-bie-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.60488.1 /TIER=ConsEnd /STK=3 /UG=Rn.60488 /UG_TITLE=ESTs BF404407 1396591_at BI296487 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296487 /DB_XREF=gi:14960958 /DB_XREF=UI-R-CV2-cgr-g-04-0-UI.s1 /CLONE=UI-R-CV2-cgr-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.79820.1 /TIER=ConsEnd /STK=3 /UG=Rn.79820 /UG_TITLE=ESTs BI296487 PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae) Pan2 408200 NM_001008862 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0004535 // poly(A)-specific ribonuclease activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1396592_at BF405096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405096 /DB_XREF=gi:11393071 /DB_XREF=UI-R-CA1-bip-f-01-0-UI.s1 /CLONE=UI-R-CA1-bip-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.59311.1 /TIER=ConsEnd /STK=3 /UG=Rn.59311 /UG_TITLE=ESTs BF405096 1396593_at BF406268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406268 /DB_XREF=gi:11394243 /DB_XREF=UI-R-CA1-bjf-o-16-0-UI.s1 /CLONE=UI-R-CA1-bjf-o-16-0-UI /FEA=EST /CNT=3 /TID=Rn.61366.1 /TIER=ConsEnd /STK=3 /UG=Rn.61366 /UG_TITLE=ESTs BF406268 1396594_at BF406162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406162 /DB_XREF=gi:11394137 /DB_XREF=UI-R-CA1-bjf-i-09-0-UI.s1 /CLONE=UI-R-CA1-bjf-i-09-0-UI /FEA=EST /CNT=3 /TID=Rn.64297.1 /TIER=ConsEnd /STK=3 /UG=Rn.64297 /UG_TITLE=ESTs BF406162 1396595_at BF405078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405078 /DB_XREF=gi:11393053 /DB_XREF=UI-R-CA1-bip-d-02-0-UI.s1 /CLONE=UI-R-CA1-bip-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.60800.1 /TIER=ConsEnd /STK=3 /UG=Rn.60800 /UG_TITLE=ESTs BF405078 1396596_at BF402645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402645 /DB_XREF=gi:11390620 /DB_XREF=UI-R-CA0-bhm-h-09-0-UI.s1 /CLONE=UI-R-CA0-bhm-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.60094.1 /TIER=ConsEnd /STK=3 /UG=Rn.60094 /UG_TITLE=ESTs BF402645 1396597_at BF405040 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405040 /DB_XREF=gi:11393015 /DB_XREF=UI-R-CA1-bio-h-04-0-UI.s1 /CLONE=UI-R-CA1-bio-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.59522.1 /TIER=ConsEnd /STK=3 /UG=Rn.59522 /UG_TITLE=ESTs BF405040 1396598_at BF405060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405060 /DB_XREF=gi:11393035 /DB_XREF=UI-R-CA1-bip-b-06-0-UI.s1 /CLONE=UI-R-CA1-bip-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.63081.1 /TIER=ConsEnd /STK=3 /UG=Rn.63081 /UG_TITLE=ESTs BF405060 1396599_at BF400752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400752 /DB_XREF=gi:11388727 /DB_XREF=UI-R-CA0-bhf-b-07-0-UI.s1 /CLONE=UI-R-CA0-bhf-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.62996.1 /TIER=ConsEnd /STK=3 /UG=Rn.62996 /UG_TITLE=ESTs BF400752 1396600_at BF393953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393953 /DB_XREF=gi:11378858 /DB_XREF=UI-R-CA0-bgx-f-03-0-UI.s1 /CLONE=UI-R-CA0-bgx-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.58193.1 /TIER=ConsEnd /STK=3 /UG=Rn.58193 /UG_TITLE=ESTs BF393953 1396601_at BF404916 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404916 /DB_XREF=gi:11392891 /DB_XREF=UI-R-CA1-bij-c-03-0-UI.s1 /CLONE=UI-R-CA1-bij-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.57303.1 /TIER=ConsEnd /STK=3 /UG=Rn.57303 /UG_TITLE=ESTs BF404916 1396602_at BF400819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400819 /DB_XREF=gi:11388834 /DB_XREF=UI-R-CA0-bhg-f-05-0-UI.s1 /CLONE=UI-R-CA0-bhg-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.53789.1 /TIER=ConsEnd /STK=3 /UG=Rn.53789 /UG_TITLE=ESTs BF400819 1396603_at BF406214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406214 /DB_XREF=gi:11394189 /DB_XREF=UI-R-CA1-bjf-e-14-0-UI.s1 /CLONE=UI-R-CA1-bjf-e-14-0-UI /FEA=EST /CNT=3 /TID=Rn.60751.1 /TIER=ConsEnd /STK=3 /UG=Rn.60751 /UG_TITLE=ESTs BF406214 1396604_at BF399424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399424 /DB_XREF=gi:11384428 /DB_XREF=UI-R-CA1-bjb-f-23-0-UI.s1 /CLONE=UI-R-CA1-bjb-f-23-0-UI /FEA=EST /CNT=3 /TID=Rn.59373.1 /TIER=ConsEnd /STK=3 /UG=Rn.59373 /UG_TITLE=ESTs, Highly similar to T00386 hypothetical protein KIAA0627 (H.sapiens) BF399424 cytoplasmic linker associated protein 2 Clasp2 114514 NM_053722 0007020 // microtubule nucleation // inferred from sequence or structural similarity /// 0007026 // negative regulation of microtubule depolymerization // inferred from direct assay /// 0007026 // negative regulation of microtubule depolymerization // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007163 // establishment or maintenance of cell polarity // not recorded /// 0016477 // cell migration // not recorded /// 0031023 // microtubule organizing center organization // inferred from sequence or structural similarity /// 0031110 // regulation of microtubule polymerization or depolymerization // not recorded /// 0034453 // microtubule anchoring // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005802 // trans-Golgi network // inferred from sequence or structural similarity /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // not recorded /// 0005938 // cell cortex // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // inferred from direct assay /// 0008017 // microtubule binding // not recorded /// 0051010 // microtubule plus-end binding // not recorded /// 0051010 // microtubule plus-end binding // inferred from sequence or structural similarity 1396605_at BE121147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121147 /DB_XREF=gi:8513252 /DB_XREF=UI-R-CA0-bau-f-02-0-UI.s1 /CLONE=UI-R-CA0-bau-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.53760.1 /TIER=ConsEnd /STK=3 /UG=Rn.53760 /UG_TITLE=ESTs BE121147 1396606_at BF393816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393816 /DB_XREF=gi:11378679 /DB_XREF=UI-R-CA0-bgv-c-06-0-UI.s1 /CLONE=UI-R-CA0-bgv-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.53566.1 /TIER=ConsEnd /STK=3 /UG=Rn.53566 /UG_TITLE=ESTs BF393816 1396607_at BI301860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301860 /DB_XREF=gi:14978140 /DB_XREF=UI-R-DL0-cin-p-22-0-UI.s1 /CLONE=UI-R-DL0-cin-p-22-0-UI /FEA=EST /CNT=3 /TID=Rn.77150.1 /TIER=ConsEnd /STK=3 /UG=Rn.77150 /UG_TITLE=ESTs BI301860 1396608_at BF399365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399365 /DB_XREF=gi:11384369 /DB_XREF=UI-R-CA1-bjb-k-04-0-UI.s1 /CLONE=UI-R-CA1-bjb-k-04-0-UI /FEA=EST /CNT=3 /TID=Rn.56361.1 /TIER=ConsEnd /STK=3 /UG=Rn.56361 /UG_TITLE=ESTs BF399365 1396609_at BF402403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402403 /DB_XREF=gi:11390378 /DB_XREF=UI-R-CA0-bhn-g-12-0-UI.s1 /CLONE=UI-R-CA0-bhn-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.62974.1 /TIER=ConsEnd /STK=3 /UG=Rn.62974 /UG_TITLE=ESTs BF402403 1396610_at BF400869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400869 /DB_XREF=gi:11388844 /DB_XREF=UI-R-CA0-bhg-g-09-0-UI.s1 /CLONE=UI-R-CA0-bhg-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.59660.1 /TIER=ConsEnd /STK=3 /UG=Rn.59660 /UG_TITLE=ESTs BF400869 1396611_at BF404562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404562 /DB_XREF=gi:11392502 /DB_XREF=UI-R-CA1-big-e-03-0-UI.s1 /CLONE=UI-R-CA1-big-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.59301.1 /TIER=ConsEnd /STK=3 /UG=Rn.59301 /UG_TITLE=ESTs BF404562 1396612_at BF413266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413266 /DB_XREF=gi:11401255 /DB_XREF=UI-R-BT1-bny-g-08-0-UI.s1 /CLONE=UI-R-BT1-bny-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.61192.1 /TIER=ConsEnd /STK=3 /UG=Rn.61192 /UG_TITLE=ESTs, Weakly similar to neurofilament triplet H protein (R.norvegicus) BF413266 ankyrin 2, neuronal Ank2 362036 XM_001076082 /// XM_342337 0007165 // signal transduction // inferred from electronic annotation /// 0007399 // nervous system development // inferred from expression pattern /// 0030913 // paranodal junction assembly // inferred from expression pattern /// 0051597 // response to methylmercury // inferred from expression pattern 0005856 // cytoskeleton // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0019717 // synaptosome // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0005200 // structural constituent of cytoskeleton // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation 1396613_at BF403417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403417 /DB_XREF=gi:11391354 /DB_XREF=UI-R-CA1-biy-o-12-0-UI.s1 /CLONE=UI-R-CA1-biy-o-12-0-UI /FEA=EST /CNT=3 /TID=Rn.59990.1 /TIER=ConsEnd /STK=3 /UG=Rn.59990 /UG_TITLE=ESTs BF403417 1396614_at BF396545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396545 /DB_XREF=gi:11381519 /DB_XREF=UI-R-BS2-bdz-d-02-0-UI.s1 /CLONE=UI-R-BS2-bdz-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.58624.1 /TIER=ConsEnd /STK=3 /UG=Rn.58624 /UG_TITLE=ESTs, Highly similar to JE0174 frizzled protein-2 (H.sapiens) BF396545 secreted frizzled-related protein 2 Sfrp2 310552 NM_001100700 0001756 // somitogenesis // not recorded /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0002063 // chondrocyte development // not recorded /// 0002063 // chondrocyte development // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from expression pattern /// 0008219 // cell death // not recorded /// 0008219 // cell death // inferred from electronic annotation /// 0008584 // male gonad development // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0021915 // neural tube development // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0031668 // cellular response to extracellular stimulus // not recorded /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0035121 // tail morphogenesis // not recorded /// 0035121 // tail morphogenesis // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042662 // negative regulation of mesodermal cell fate specification // not recorded /// 0042662 // negative regulation of mesodermal cell fate specification // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // not recorded /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043508 // negative regulation of JUN kinase activity // not recorded /// 0043508 // negative regulation of JUN kinase activity // inferred from electronic annotation /// 0046546 // development of primary male sexual characteristics // not recorded /// 0048546 // digestive tract morphogenesis // not recorded /// 0051216 // cartilage development // not recorded /// 0051216 // cartilage development // inferred from electronic annotation /// 0060028 // convergent extension involved in axis elongation // not recorded /// 0060349 // bone morphogenesis // not recorded /// 0060349 // bone morphogenesis // inferred from electronic annotation /// 0061054 // dermatome development // not recorded /// 0061056 // sclerotome development // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0090175 // regulation of establishment of planar polarity // not recorded /// 0090175 // regulation of establishment of planar polarity // inferred from electronic annotation 0005615 // extracellular space // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017147 // Wnt-protein binding // not recorded /// 0017147 // Wnt-protein binding // inferred from electronic annotation 1396615_at BF410400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410400 /DB_XREF=gi:11398375 /DB_XREF=UI-R-CA1-bjx-a-10-0-UI.s1 /CLONE=UI-R-CA1-bjx-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.61692.1 /TIER=ConsEnd /STK=3 /UG=Rn.61692 /UG_TITLE=ESTs BF410400 ectonucleoside triphosphate diphosphohydrolase 4 Entpd4 361063 NM_001108384 0006256 // UDP catabolic process // not recorded 0030173 // integral to Golgi membrane // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0016787 // hydrolase activity // inferred from electronic annotation /// 0045134 // uridine-diphosphatase activity // not recorded 1396616_at BF405126 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405126 /DB_XREF=gi:11393101 /DB_XREF=UI-R-CA1-biq-a-04-0-UI.s1 /CLONE=UI-R-CA1-biq-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.57635.1 /TIER=ConsEnd /STK=3 /UG=Rn.57635 /UG_TITLE=ESTs BF405126 Calponin 3, acidic Cnn3 54321 NM_019359 0031032 // actomyosin structure organization // inferred from electronic annotation /// 0032780 // negative regulation of ATPase activity // inferred from direct assay 0005874 // microtubule // traceable author statement /// 0005884 // actin filament // traceable author statement /// 0014069 // postsynaptic density // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from direct assay /// 0030674 // protein binding, bridging // non-traceable author statement 1396617_at BE115265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115265 /DB_XREF=gi:8507370 /DB_XREF=UI-R-CA0-axr-c-04-0-UI.s1 /CLONE=UI-R-CA0-axr-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.63356.1 /TIER=ConsEnd /STK=3 /UG=Rn.63356 /UG_TITLE=ESTs BE115265 1396618_at BE097299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097299 /DB_XREF=gi:8488230 /DB_XREF=UI-R-BO1-apv-g-02-0-UI.s1 /CLONE=UI-R-BO1-apv-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.46884.1 /TIER=ConsEnd /STK=3 /UG=Rn.46884 /UG_TITLE=ESTs BE097299 1396619_at BF403306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403306 /DB_XREF=gi:11391281 /DB_XREF=UI-R-CA1-biy-a-20-0-UI.s1 /CLONE=UI-R-CA1-biy-a-20-0-UI /FEA=EST /CNT=3 /TID=Rn.59245.1 /TIER=ConsEnd /STK=3 /UG=Rn.59245 /UG_TITLE=ESTs BF403306 1396620_at BE111348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111348 /DB_XREF=gi:8503453 /DB_XREF=UI-R-BJ1-ava-g-03-0-UI.s1 /CLONE=UI-R-BJ1-ava-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.51900.1 /TIER=ConsEnd /STK=3 /UG=Rn.51900 /UG_TITLE=ESTs BE111348 1396621_at BF408910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408910 /DB_XREF=gi:11396885 /DB_XREF=UI-R-BS2-bet-g-11-0-UI.s1 /CLONE=UI-R-BS2-bet-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.61208.1 /TIER=ConsEnd /STK=3 /UG=Rn.61208 /UG_TITLE=ESTs BF408910 1396622_at BF387611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387611 /DB_XREF=gi:11372435 /DB_XREF=UI-R-CA1-bbs-d-01-0-UI.s1 /CLONE=UI-R-CA1-bbs-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.61348.1 /TIER=ConsEnd /STK=3 /UG=Rn.61348 /UG_TITLE=ESTs BF387611 1396623_at BF399568 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399568 /DB_XREF=gi:11384576 /DB_XREF=UI-R-CA0-bht-a-03-0-UI.s2 /CLONE=UI-R-CA0-bht-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.60205.1 /TIER=ConsEnd /STK=3 /UG=Rn.60205 /UG_TITLE=ESTs BF399568 1396624_at BF403301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403301 /DB_XREF=gi:11391276 /DB_XREF=UI-R-CA1-biy-a-06-0-UI.s1 /CLONE=UI-R-CA1-biy-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.59238.1 /TIER=ConsEnd /STK=3 /UG=Rn.59238 /UG_TITLE=ESTs BF403301 1396625_at BF394114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394114 /DB_XREF=gi:11378978 /DB_XREF=UI-R-CA0-bgz-f-01-0-UI.s1 /CLONE=UI-R-CA0-bgz-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.58216.1 /TIER=ConsEnd /STK=3 /UG=Rn.58216 /UG_TITLE=ESTs BF394114 1396626_at BF410555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410555 /DB_XREF=gi:11398530 /DB_XREF=UI-R-CA0-bma-b-02-0-UI.s1 /CLONE=UI-R-CA0-bma-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.51562.1 /TIER=ConsEnd /STK=3 /UG=Rn.51562 /UG_TITLE=ESTs BF410555 1396627_at BF399496 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399496 /DB_XREF=gi:11384504 /DB_XREF=UI-R-CA1-bjb-d-10-0-UI.s1 /CLONE=UI-R-CA1-bjb-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.60474.1 /TIER=ConsEnd /STK=3 /UG=Rn.60474 /UG_TITLE=ESTs BF399496 1396628_at BF403338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403338 /DB_XREF=gi:11391313 /DB_XREF=UI-R-CA1-biy-g-20-0-UI.s1 /CLONE=UI-R-CA1-biy-g-20-0-UI /FEA=EST /CNT=3 /TID=Rn.52238.1 /TIER=ConsEnd /STK=3 /UG=Rn.52238 /UG_TITLE=ESTs BF403338 1396629_at BF418824 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418824 /DB_XREF=gi:11406813 /DB_XREF=UI-R-BJ2-bqj-d-06-0-UI.s1 /CLONE=UI-R-BJ2-bqj-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.63439.1 /TIER=ConsEnd /STK=3 /UG=Rn.63439 /UG_TITLE=ESTs BF418824 ORM1-like 3 (S. cerevisiae) Ormdl3 360618 NM_001047897 0006672 // ceramide metabolic process // not recorded /// 0006672 // ceramide metabolic process // inferred from sequence or structural similarity /// 0006672 // ceramide metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0035339 // SPOTS complex // not recorded /// 0035339 // SPOTS complex // inferred from sequence or structural similarity /// 0035339 // SPOTS complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396630_at BF393572 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393572 /DB_XREF=gi:11378434 /DB_XREF=UI-R-CA0-bgd-d-12-0-UI.s1 /CLONE=UI-R-CA0-bgd-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.53758.1 /TIER=ConsEnd /STK=3 /UG=Rn.53758 /UG_TITLE=ESTs BF393572 1396631_at BF410419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410419 /DB_XREF=gi:11398394 /DB_XREF=UI-R-CA1-bjx-c-09-0-UI.s1 /CLONE=UI-R-CA1-bjx-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.64438.1 /TIER=ConsEnd /STK=3 /UG=Rn.64438 /UG_TITLE=ESTs, Weakly similar to YB40_HUMAN Hypothetical protein KIAA1140 (H.sapiens) BF410419 Tetratricopeptide repeat domain 7B Ttc7b 362768 NM_001108719 0005488 // binding // inferred from electronic annotation 1396632_at BF418074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418074 /DB_XREF=gi:11406063 /DB_XREF=UI-R-CA0-blz-b-06-0-UI.s1 /CLONE=UI-R-CA0-blz-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.63355.1 /TIER=ConsEnd /STK=3 /UG=Rn.63355 /UG_TITLE=ESTs BF418074 1396633_at BE120534 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120534 /DB_XREF=gi:8512639 /DB_XREF=UI-R-CA0-bat-f-01-0-UI.s1 /CLONE=UI-R-CA0-bat-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.53500.1 /TIER=ConsEnd /STK=3 /UG=Rn.53500 /UG_TITLE=ESTs BE120534 1396634_at BE121305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121305 /DB_XREF=gi:8513410 /DB_XREF=UI-R-CA0-baw-d-02-0-UI.s1 /CLONE=UI-R-CA0-baw-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.52269.1 /TIER=ConsEnd /STK=3 /UG=Rn.52269 /UG_TITLE=ESTs BE121305 1396635_at BF409915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409915 /DB_XREF=gi:11397890 /DB_XREF=UI-R-CA1-bjy-c-09-0-UI.s1 /CLONE=UI-R-CA1-bjy-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.63074.1 /TIER=ConsEnd /STK=3 /UG=Rn.63074 /UG_TITLE=ESTs BF409915 1396636_at BF400225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400225 /DB_XREF=gi:11385236 /DB_XREF=UI-R-CA1-bjc-d-07-0-UI.s1 /CLONE=UI-R-CA1-bjc-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.59548.1 /TIER=ConsEnd /STK=3 /UG=Rn.59548 /UG_TITLE=ESTs BF400225 1396637_at BE099828 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099828 /DB_XREF=gi:8491709 /DB_XREF=UI-R-BJ1-atq-f-11-0-UI.s1 /CLONE=UI-R-BJ1-atq-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.49911.1 /TIER=ConsEnd /STK=3 /UG=Rn.49911 /UG_TITLE=ESTs BE099828 1396638_at BM382854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM382854 /DB_XREF=gi:18182907 /DB_XREF=UI-R-BT1-bko-f-03-0-UI.s1 /CLONE=UI-R-BT1-bko-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.68675.1 /TIER=ConsEnd /STK=3 /UG=Rn.68675 /UG_TITLE=ESTs, Weakly similar to SEP7_RAT SEPTIN 7 (CDC10 PROTEIN HOMOLOG) (R.norvegicus) BM382854 1396639_at BE120718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120718 /DB_XREF=gi:8512823 /DB_XREF=UI-R-CA0-bay-g-03-0-UI.s1 /CLONE=UI-R-CA0-bay-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.53647.1 /TIER=ConsEnd /STK=3 /UG=Rn.53647 /UG_TITLE=ESTs BE120718 1396640_at BF403481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403481 /DB_XREF=gi:11391456 /DB_XREF=UI-R-CA1-biz-b-24-0-UI.s1 /CLONE=UI-R-CA1-biz-b-24-0-UI /FEA=EST /CNT=3 /TID=Rn.59328.1 /TIER=ConsEnd /STK=3 /UG=Rn.59328 /UG_TITLE=ESTs BF403481 1396641_at BF397278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397278 /DB_XREF=gi:11382261 /DB_XREF=UI-R-BS2-bek-e-03-0-UI.s1 /CLONE=UI-R-BS2-bek-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.58472.1 /TIER=ConsEnd /STK=3 /UG=Rn.58472 /UG_TITLE=ESTs BF397278 1396642_at BF403725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403725 /DB_XREF=gi:11391700 /DB_XREF=UI-R-CA1-bix-p-24-0-UI.s1 /CLONE=UI-R-CA1-bix-p-24-0-UI /FEA=EST /CNT=3 /TID=Rn.59543.1 /TIER=ConsEnd /STK=3 /UG=Rn.59543 /UG_TITLE=ESTs, Highly similar to T13057 KIAA0729 protein (H.sapiens) BF403725 similar to ubiquitin specific protease 34 LOC360990 360990 XM_002725026 /// XM_002728139 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1396643_at BF400061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400061 /DB_XREF=gi:11385036 /DB_XREF=UI-R-CA1-bia-g-05-0-UI.s1 /CLONE=UI-R-CA1-bia-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.59232.1 /TIER=ConsEnd /STK=3 /UG=Rn.59232 /UG_TITLE=ESTs BF400061 1396644_at BF413700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413700 /DB_XREF=gi:11401689 /DB_XREF=UI-R-CA0-boh-e-05-0-UI.s1 /CLONE=UI-R-CA0-boh-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.62429.1 /TIER=ConsEnd /STK=3 /UG=Rn.62429 /UG_TITLE=ESTs BF413700 1396645_at BE109893 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109893 /DB_XREF=gi:8501998 /DB_XREF=UI-R-CA0-axi-f-02-0-UI.s1 /CLONE=UI-R-CA0-axi-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.51762.1 /TIER=ConsEnd /STK=3 /UG=Rn.51762 /UG_TITLE=ESTs BE109893 1396646_at BF400757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400757 /DB_XREF=gi:11388732 /DB_XREF=UI-R-CA0-bhf-c-03-0-UI.s1 /CLONE=UI-R-CA0-bhf-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.52474.1 /TIER=ConsEnd /STK=3 /UG=Rn.52474 /UG_TITLE=ESTs BF400757 Leber congenital amaurosis 5 (human) Lca5 300866 NM_001013954 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005929 // cilium // inferred from electronic annotation /// 0005932 // microtubule basal body // inferred from electronic annotation /// 0035085 // cilium axoneme // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396647_at BE106767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106767 /DB_XREF=gi:8498869 /DB_XREF=UI-R-BO1-asr-h-11-0-UI.s1 /CLONE=UI-R-BO1-asr-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.49678.1 /TIER=ConsEnd /STK=3 /UG=Rn.49678 /UG_TITLE=ESTs BE106767 1396648_at BF399547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399547 /DB_XREF=gi:11384555 /DB_XREF=UI-R-CA1-bjb-n-08-0-UI.s1 /CLONE=UI-R-CA1-bjb-n-08-0-UI /FEA=EST /CNT=3 /TID=Rn.59406.1 /TIER=ConsEnd /STK=3 /UG=Rn.59406 /UG_TITLE=ESTs BF399547 1396649_at BF413642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413642 /DB_XREF=gi:11401631 /DB_XREF=UI-R-CA0-bog-g-08-0-UI.s1 /CLONE=UI-R-CA0-bog-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.62408.1 /TIER=ConsEnd /STK=3 /UG=Rn.62408 /UG_TITLE=ESTs BF413642 1396650_at AW534192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534192 /DB_XREF=gi:7176606 /DB_XREF=UI-R-C4-alq-c-11-0-UI.s1 /CLONE=UI-R-C4-alq-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.64885.1 /TIER=ConsEnd /STK=3 /UG=Rn.64885 /UG_TITLE=ESTs AW534192 1396651_at BE120496 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120496 /DB_XREF=gi:8512601 /DB_XREF=UI-R-CA0-bat-b-06-0-UI.s1 /CLONE=UI-R-CA0-bat-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.53259.1 /TIER=ConsEnd /STK=3 /UG=Rn.53259 /UG_TITLE=ESTs, Highly similar to I49635 mouse Dhm1 protein - mouse (M.musculus) BE120496 1396652_at BF392621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392621 /DB_XREF=gi:11377478 /DB_XREF=UI-R-CA0-bfl-c-12-0-UI.s1 /CLONE=UI-R-CA0-bfl-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.57864.1 /TIER=ConsEnd /STK=3 /UG=Rn.57864 /UG_TITLE=ESTs BF392621 1396653_at BF399505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399505 /DB_XREF=gi:11384513 /DB_XREF=UI-R-CA1-bjb-f-10-0-UI.s1 /CLONE=UI-R-CA1-bjb-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.59394.1 /TIER=ConsEnd /STK=3 /UG=Rn.59394 /UG_TITLE=ESTs BF399505 similar to mKIAA1623 protein RGD1563946 306340 XM_002725176 /// XM_002728392 1396654_at BF403645 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403645 /DB_XREF=gi:11391620 /DB_XREF=UI-R-CA1-bix-b-12-0-UI.s1 /CLONE=UI-R-CA1-bix-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.60241.1 /TIER=ConsEnd /STK=3 /UG=Rn.60241 /UG_TITLE=ESTs BF403645 1396655_at BF400896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400896 /DB_XREF=gi:11388871 /DB_XREF=UI-R-CA0-bgg-b-10-0-UI.s1 /CLONE=UI-R-CA0-bgg-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.58386.1 /TIER=ConsEnd /STK=3 /UG=Rn.58386 /UG_TITLE=ESTs BF400896 potassium inwardly-rectifying channel, subfamily J, member 9 Kcnj9 116560 NM_053834 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015467 // G-protein activated inward rectifier potassium channel activity // inferred from electronic annotation 1396656_at BF410595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410595 /DB_XREF=gi:11398570 /DB_XREF=UI-R-CA0-bma-e-12-0-UI.s1 /CLONE=UI-R-CA0-bma-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.61753.1 /TIER=ConsEnd /STK=3 /UG=Rn.61753 /UG_TITLE=ESTs BF410595 1396657_at BF399545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399545 /DB_XREF=gi:11384553 /DB_XREF=UI-R-CA1-bjb-n-04-0-UI.s1 /CLONE=UI-R-CA1-bjb-n-04-0-UI /FEA=EST /CNT=3 /TID=Rn.61461.1 /TIER=ConsEnd /STK=3 /UG=Rn.61461 /UG_TITLE=ESTs BF399545 1396658_at BF403875 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403875 /DB_XREF=gi:11391850 /DB_XREF=UI-R-CA1-bix-n-23-0-UI.s1 /CLONE=UI-R-CA1-bix-n-23-0-UI /FEA=EST /CNT=3 /TID=Rn.60380.1 /TIER=ConsEnd /STK=3 /UG=Rn.60380 /UG_TITLE=ESTs BF403875 1396659_at BF393168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393168 /DB_XREF=gi:11378023 /DB_XREF=UI-R-CA0-bfp-e-03-0-UI.s1 /CLONE=UI-R-CA0-bfp-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.57766.1 /TIER=ConsEnd /STK=3 /UG=Rn.57766 /UG_TITLE=ESTs BF393168 1396660_at BE108561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108561 /DB_XREF=gi:8500666 /DB_XREF=UI-R-CA0-axf-f-12-0-UI.s1 /CLONE=UI-R-CA0-axf-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.51525.1 /TIER=ConsEnd /STK=3 /UG=Rn.51525 /UG_TITLE=ESTs BE108561 1396661_at BE108555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108555 /DB_XREF=gi:8500660 /DB_XREF=UI-R-CA0-axf-f-06-0-UI.s1 /CLONE=UI-R-CA0-axf-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.62486.1 /TIER=ConsEnd /STK=3 /UG=Rn.62486 /UG_TITLE=ESTs, Highly similar to DEA5 MOUSE DEAD-BOX RNA HELICASE DEAD5 (M.musculus) BE108555 DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a Ddx19a 292022 NM_001005381 0006917 // induction of apoptosis // inferred from mutant phenotype /// 0010043 // response to zinc ion // inferred from expression pattern 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1396662_at BF410720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410720 /DB_XREF=gi:11398695 /DB_XREF=UI-R-CA0-bmc-a-12-0-UI.s1 /CLONE=UI-R-CA0-bmc-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.51602.1 /TIER=ConsEnd /STK=3 /UG=Rn.51602 /UG_TITLE=ESTs BF410720 1396663_at BI300284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300284 /DB_XREF=gi:14976564 /DB_XREF=UI-R-CV2-cid-b-10-0-UI.s1 /CLONE=UI-R-CV2-cid-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.79905.1 /TIER=ConsEnd /STK=3 /UG=Rn.79905 /UG_TITLE=ESTs, Weakly similar to FORMIN (M.musculus) BI300284 1396664_at BF409427 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409427 /DB_XREF=gi:11397366 /DB_XREF=UI-R-CA1-blf-e-04-0-UI.s1 /CLONE=UI-R-CA1-blf-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.61342.1 /TIER=ConsEnd /STK=3 /UG=Rn.61342 /UG_TITLE=ESTs BF409427 1396665_at BE115250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115250 /DB_XREF=gi:8507355 /DB_XREF=UI-R-CA0-axr-a-11-0-UI.s1 /CLONE=UI-R-CA0-axr-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.51526.1 /TIER=ConsEnd /STK=3 /UG=Rn.51526 /UG_TITLE=ESTs BE115250 1396666_at BF401640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401640 /DB_XREF=gi:11389615 /DB_XREF=UI-R-CA0-bgn-a-01-0-UI.s1 /CLONE=UI-R-CA0-bgn-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.59843.1 /TIER=ConsEnd /STK=3 /UG=Rn.59843 /UG_TITLE=ESTs BF401640 1396667_at BE110325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110325 /DB_XREF=gi:8502430 /DB_XREF=UI-R-CA0-axl-f-08-0-UI.s1 /CLONE=UI-R-CA0-axl-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.51596.1 /TIER=ConsEnd /STK=3 /UG=Rn.51596 /UG_TITLE=ESTs BE110325 1396668_at BF410178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410178 /DB_XREF=gi:11398153 /DB_XREF=UI-R-CA1-bju-d-07-0-UI.s1 /CLONE=UI-R-CA1-bju-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.61607.1 /TIER=ConsEnd /STK=3 /UG=Rn.61607 /UG_TITLE=ESTs BF410178 1396669_at BE114452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114452 /DB_XREF=gi:8506557 /DB_XREF=UI-R-CA0-axm-d-05-0-UI.s1 /CLONE=UI-R-CA0-axm-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.52387.1 /TIER=ConsEnd /STK=3 /UG=Rn.52387 /UG_TITLE=ESTs BE114452 1396670_at BE097242 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097242 /DB_XREF=gi:8488173 /DB_XREF=UI-R-BO1-apv-a-05-0-UI.s1 /CLONE=UI-R-BO1-apv-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.47281.1 /TIER=ConsEnd /STK=3 /UG=Rn.47281 /UG_TITLE=ESTs BE097242 1396671_at BF400889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400889 /DB_XREF=gi:11388864 /DB_XREF=UI-R-CA0-bgg-a-12-0-UI.s1 /CLONE=UI-R-CA0-bgg-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.58339.1 /TIER=ConsEnd /STK=3 /UG=Rn.58339 /UG_TITLE=ESTs BF400889 1396672_at BF393007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393007 /DB_XREF=gi:11377867 /DB_XREF=UI-R-CA0-bfr-g-08-0-UI.s1 /CLONE=UI-R-CA0-bfr-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.52133.1 /TIER=ConsEnd /STK=3 /UG=Rn.52133 /UG_TITLE=ESTs, Moderately similar to 1109246Q T cell receptor alpha TA80 (M.musculus) BF393007 hypothetical LOC290156 /// hypothetical LOC682708 /// similar to RIKEN cDNA A430107P09 gene LOC290156 /// LOC682708 /// RGD1308409 290156 /// 364365 /// 682708 XM_002727357 /// XM_002727390 /// XM_002728226 /// XM_002728249 1396673_at BF404019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404019 /DB_XREF=gi:11391994 /DB_XREF=UI-R-CA1-bjd-i-04-0-UI.s1 /CLONE=UI-R-CA1-bjd-i-04-0-UI /FEA=EST /CNT=3 /TID=Rn.62698.1 /TIER=ConsEnd /STK=3 /UG=Rn.62698 /UG_TITLE=ESTs BF404019 1396674_at BE112439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112439 /DB_XREF=gi:8504544 /DB_XREF=UI-R-BJ1-avm-f-10-0-UI.s1 /CLONE=UI-R-BJ1-avm-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.52184.1 /TIER=ConsEnd /STK=3 /UG=Rn.52184 /UG_TITLE=ESTs, Weakly similar to complement component 3a receptor 1 (Rattus norvegicus) (R.norvegicus) BE112439 G protein-coupled receptor 44 Gpr44 309212 NM_001012070 0006935 // chemotaxis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007193 // inhibition of adenylate cyclase activity by G-protein signaling pathway // not recorded /// 0019722 // calcium-mediated signaling // not recorded /// 0045745 // positive regulation of G-protein coupled receptor protein signaling pathway // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0001785 // prostaglandin J receptor activity // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // not recorded /// 0004956 // prostaglandin D receptor activity // not recorded /// 0004958 // prostaglandin F receptor activity // not recorded /// 0004982 // N-formyl peptide receptor activity // inferred from electronic annotation 1396675_at BF401461 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401461 /DB_XREF=gi:11389436 /DB_XREF=UI-R-CA0-bgt-h-05-0-UI.s1 /CLONE=UI-R-CA0-bgt-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.57813.1 /TIER=ConsEnd /STK=3 /UG=Rn.57813 /UG_TITLE=ESTs BF401461 1396676_at BF394718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394718 /DB_XREF=gi:11379676 /DB_XREF=UI-R-CA0-bge-a-11-0-UI.s1 /CLONE=UI-R-CA0-bge-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.58039.1 /TIER=ConsEnd /STK=3 /UG=Rn.58039 /UG_TITLE=ESTs BF394718 1396677_at BF406365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406365 /DB_XREF=gi:11394340 /DB_XREF=UI-R-CA1-bjf-b-24-0-UI.s1 /CLONE=UI-R-CA1-bjf-b-24-0-UI /FEA=EST /CNT=3 /TID=Rn.63281.1 /TIER=ConsEnd /STK=3 /UG=Rn.63281 /UG_TITLE=ESTs BF406365 1396678_at BE106456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106456 /DB_XREF=gi:8498558 /DB_XREF=UI-R-BO1-aso-b-10-0-UI.s1 /CLONE=UI-R-BO1-aso-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.50925.1 /TIER=ConsEnd /STK=3 /UG=Rn.50925 /UG_TITLE=ESTs BE106456 1396679_at BF394899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394899 /DB_XREF=gi:11379852 /DB_XREF=UI-R-CA0-bgf-b-05-0-UI.s1 /CLONE=UI-R-CA0-bgf-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.58051.1 /TIER=ConsEnd /STK=3 /UG=Rn.58051 /UG_TITLE=ESTs BF394899 1396680_at BI291402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291402 /DB_XREF=gi:14950913 /DB_XREF=UI-R-CV2-cgp-g-01-0-UI.s1 /CLONE=UI-R-CV2-cgp-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.79909.1 /TIER=ConsEnd /STK=3 /UG=Rn.79909 /UG_TITLE=ESTs BI291402 1396681_at BF402663 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402663 /DB_XREF=gi:11390638 /DB_XREF=UI-R-CA0-bho-b-05-0-UI.s1 /CLONE=UI-R-CA0-bho-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.51548.1 /TIER=ConsEnd /STK=3 /UG=Rn.51548 /UG_TITLE=ESTs BF402663 1396682_at BF403038 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403038 /DB_XREF=gi:11391013 /DB_XREF=UI-R-CA0-bhl-g-08-0-UI.s1 /CLONE=UI-R-CA0-bhl-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.53148.1 /TIER=ConsEnd /STK=3 /UG=Rn.53148 /UG_TITLE=ESTs BF403038 protein phosphatase 1, regulatory subunit 10 Ppp1r10 65045 NM_022951 0006350 // transcription // inferred from electronic annotation /// 0006354 // RNA elongation // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from direct assay /// 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008157 // protein phosphatase 1 binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1396683_at BE099973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099973 /DB_XREF=gi:8491857 /DB_XREF=UI-R-BJ1-atr-c-05-0-UI.s1 /CLONE=UI-R-BJ1-atr-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.49926.1 /TIER=ConsEnd /STK=3 /UG=Rn.49926 /UG_TITLE=ESTs BE099973 1396684_at BE120966 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120966 /DB_XREF=gi:8513071 /DB_XREF=UI-R-CA0-baf-e-10-0-UI.s1 /CLONE=UI-R-CA0-baf-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.51603.1 /TIER=ConsEnd /STK=3 /UG=Rn.51603 /UG_TITLE=ESTs BE120966 patatin-like phospholipase domain containing 7 Pnpla7 246246 NM_144738 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0004091 // carboxylesterase activity // inferred from mutant phenotype /// 0016787 // hydrolase activity // inferred from electronic annotation 1396685_at BE121368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121368 /DB_XREF=gi:8513473 /DB_XREF=UI-R-CA0-bax-b-02-0-UI.s1 /CLONE=UI-R-CA0-bax-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.60173.1 /TIER=ConsEnd /STK=3 /UG=Rn.60173 /UG_TITLE=ESTs BE121368 1396686_at BF401617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401617 /DB_XREF=gi:11389592 /DB_XREF=UI-R-CA0-bgm-f-11-0-UI.s1 /CLONE=UI-R-CA0-bgm-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.59691.1 /TIER=ConsEnd /STK=3 /UG=Rn.59691 /UG_TITLE=ESTs BF401617 1396687_at BF412949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412949 /DB_XREF=gi:11400938 /DB_XREF=UI-R-CA0-boc-f-11-0-UI.s1 /CLONE=UI-R-CA0-boc-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.62201.1 /TIER=ConsEnd /STK=3 /UG=Rn.62201 /UG_TITLE=ESTs BF412949 1396688_at BF393691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393691 /DB_XREF=gi:11378554 /DB_XREF=UI-R-CA0-bga-g-12-0-UI.s1 /CLONE=UI-R-CA0-bga-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.57742.1 /TIER=ConsEnd /STK=3 /UG=Rn.57742 /UG_TITLE=ESTs BF393691 1396689_at BF413213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413213 /DB_XREF=gi:11401202 /DB_XREF=UI-R-BT1-bny-b-04-0-UI.s1 /CLONE=UI-R-BT1-bny-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.53269.1 /TIER=ConsEnd /STK=3 /UG=Rn.53269 /UG_TITLE=ESTs BF413213 1396690_at BF401284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401284 /DB_XREF=gi:11389259 /DB_XREF=UI-R-CA0-bgq-h-06-0-UI.s1 /CLONE=UI-R-CA0-bgq-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.58335.1 /TIER=ConsEnd /STK=3 /UG=Rn.58335 /UG_TITLE=ESTs BF401284 1396691_at BF391972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391972 /DB_XREF=gi:11376829 /DB_XREF=UI-R-CA0-bfh-g-01-0-UI.s1 /CLONE=UI-R-CA0-bfh-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.53171.1 /TIER=ConsEnd /STK=3 /UG=Rn.53171 /UG_TITLE=ESTs BF391972 1396692_at BE115748 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115748 /DB_XREF=gi:8507853 /DB_XREF=UI-R-CA0-axs-d-10-0-UI.s1 /CLONE=UI-R-CA0-axs-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.52557.1 /TIER=ConsEnd /STK=3 /UG=Rn.52557 /UG_TITLE=ESTs, Weakly similar to T31596 hypothetical protein Y48C3A.n - Caenorhabditis elegans (C.elegans) BE115748 pseudouridylate synthase 10 Pus10 305583 NM_001025278 0001522 // pseudouridine synthesis // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0009982 // pseudouridine synthase activity // inferred from electronic annotation 1396693_at BF391854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391854 /DB_XREF=gi:11376709 /DB_XREF=UI-R-CA1-bcy-d-04-0-UI.s1 /CLONE=UI-R-CA1-bcy-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.59512.1 /TIER=ConsEnd /STK=3 /UG=Rn.59512 /UG_TITLE=ESTs BF391854 1396694_at BF400272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400272 /DB_XREF=gi:11385283 /DB_XREF=UI-R-CA1-bjc-l-13-0-UI.s1 /CLONE=UI-R-CA1-bjc-l-13-0-UI /FEA=EST /CNT=3 /TID=Rn.59580.1 /TIER=ConsEnd /STK=3 /UG=Rn.59580 /UG_TITLE=ESTs BF400272 1396695_at BF392459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392459 /DB_XREF=gi:11377316 /DB_XREF=UI-R-CA0-bfj-e-03-0-UI.s1 /CLONE=UI-R-CA0-bfj-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.53398.1 /TIER=ConsEnd /STK=3 /UG=Rn.53398 /UG_TITLE=ESTs BF392459 1396696_at BF390683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390683 /DB_XREF=gi:11375530 /DB_XREF=UI-R-CA1-bco-b-02-0-UI.s1 /CLONE=UI-R-CA1-bco-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.59326.1 /TIER=ConsEnd /STK=3 /UG=Rn.59326 /UG_TITLE=ESTs BF390683 glutamate receptor, ionotropic, AMPA4 Gria4 29629 NM_001113184 /// NM_001113185 /// NM_017263 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from mutant phenotype /// 0007268 // synaptic transmission // traceable author statement /// 0050803 // regulation of synapse structure and activity // traceable author statement /// 0050804 // regulation of synaptic transmission // inferred from mutant phenotype /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype /// 0060992 // response to fungicide // inferred from expression pattern 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008328 // ionotropic glutamate receptor complex // traceable author statement /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0030425 // dendrite // inferred from mutant phenotype /// 0030666 // endocytic vesicle membrane // not recorded /// 0032281 // alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex // inferred from electronic annotation /// 0032281 // alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex // not recorded /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0045202 // synapse // inferred from mutant phenotype /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0004971 // alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity // inferred from mutant phenotype /// 0004971 // alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity // traceable author statement /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005234 // extracellular-glutamate-gated ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396697_at BF419773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419773 /DB_XREF=gi:11407762 /DB_XREF=UI-R-CA0-bpg-a-12-0-UI.s1 /CLONE=UI-R-CA0-bpg-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.63580.1 /TIER=ConsEnd /STK=3 /UG=Rn.63580 /UG_TITLE=ESTs BF419773 1396698_at BF390322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390322 /DB_XREF=gi:11375168 /DB_XREF=UI-R-CA1-bcn-e-11-0-UI.s1 /CLONE=UI-R-CA1-bcn-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.60757.1 /TIER=ConsEnd /STK=3 /UG=Rn.60757 /UG_TITLE=ESTs BF390322 1396699_at BF392736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392736 /DB_XREF=gi:11377593 /DB_XREF=UI-R-CA0-bfm-f-07-0-UI.s1 /CLONE=UI-R-CA0-bfm-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.57703.1 /TIER=ConsEnd /STK=3 /UG=Rn.57703 /UG_TITLE=ESTs BF392736 1396700_at BF409364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409364 /DB_XREF=gi:11397339 /DB_XREF=UI-R-CA1-blf-b-11-0-UI.s1 /CLONE=UI-R-CA1-blf-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.61502.1 /TIER=ConsEnd /STK=3 /UG=Rn.61502 /UG_TITLE=ESTs BF409364 1396701_at BE110052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110052 /DB_XREF=gi:8502157 /DB_XREF=UI-R-CA0-axj-e-02-0-UI.s1 /CLONE=UI-R-CA0-axj-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.51798.1 /TIER=ConsEnd /STK=3 /UG=Rn.51798 /UG_TITLE=ESTs BE110052 Kalirin, RhoGEF kinase Kalrn 84009 NM_032062 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007399 // nervous system development // inferred from direct assay /// 0007409 // axonogenesis // inferred from direct assay /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0016192 // vesicle-mediated transport // inferred from direct assay /// 0023034 // intracellular signaling pathway // inferred from direct assay /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0050773 // regulation of dendrite development // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // traceable author statement /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1396702_at AI501585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501585 /DB_XREF=gi:4399436 /DB_XREF=UI-R-C2p-sc-h-04-0-UI.s1 /CLONE=UI-R-C2p-sc-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.35098.1 /TIER=ConsEnd /STK=3 /UG=Rn.35098 /UG_TITLE=ESTs AI501585 1396703_at BF412919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412919 /DB_XREF=gi:11400908 /DB_XREF=UI-R-CA0-boc-d-02-0-UI.s1 /CLONE=UI-R-CA0-boc-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.51864.1 /TIER=ConsEnd /STK=3 /UG=Rn.51864 /UG_TITLE=ESTs BF412919 coiled-coil domain containing 158 Ccdc158 289502 XM_001070834 /// XM_223231 1396704_at BF394808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394808 /DB_XREF=gi:11379766 /DB_XREF=UI-R-CA0-bfz-b-12-0-UI.s1 /CLONE=UI-R-CA0-bfz-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.58065.1 /TIER=ConsEnd /STK=3 /UG=Rn.58065 /UG_TITLE=ESTs BF394808 1396705_at BF413351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413351 /DB_XREF=gi:11401340 /DB_XREF=UI-R-CA0-boe-a-10-0-UI.s1 /CLONE=UI-R-CA0-boe-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.62314.1 /TIER=ConsEnd /STK=3 /UG=Rn.62314 /UG_TITLE=ESTs BF413351 hypothetical protein LOC691162 LOC691162 691162 NM_001109629 1396706_at BF398967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398967 /DB_XREF=gi:11383970 /DB_XREF=UI-R-CA1-biz-e-08-0-UI.s1 /CLONE=UI-R-CA1-biz-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.59219.1 /TIER=ConsEnd /STK=3 /UG=Rn.59219 /UG_TITLE=ESTs BF398967 1396707_at BF404674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404674 /DB_XREF=gi:11392649 /DB_XREF=UI-R-CA1-bib-c-11-0-UI.s1 /CLONE=UI-R-CA1-bib-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.59285.1 /TIER=ConsEnd /STK=3 /UG=Rn.59285 /UG_TITLE=ESTs BF404674 1396708_at BF404975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404975 /DB_XREF=gi:11392950 /DB_XREF=UI-R-CA1-bij-h-10-0-UI.s1 /CLONE=UI-R-CA1-bij-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.59950.1 /TIER=ConsEnd /STK=3 /UG=Rn.59950 /UG_TITLE=ESTs BF404975 transmembrane protein 151A Tmem151a 309158 NM_001107570 0016021 // integral to membrane // inferred from electronic annotation 1396709_at BE108621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108621 /DB_XREF=gi:8500726 /DB_XREF=UI-R-CA0-axg-d-12-0-UI.s1 /CLONE=UI-R-CA0-axg-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.61746.1 /TIER=ConsEnd /STK=3 /UG=Rn.61746 /UG_TITLE=ESTs BE108621 1396710_at BF417339 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417339 /DB_XREF=gi:11405328 /DB_XREF=UI-R-CN0-bld-a-07-0-UI.s1 /CLONE=UI-R-CN0-bld-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.63130.1 /TIER=ConsEnd /STK=3 /UG=Rn.63130 /UG_TITLE=ESTs BF417339 1396711_at BF391506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391506 /DB_XREF=gi:11376323 /DB_XREF=UI-R-CA1-bcx-g-10-0-UI.s1 /CLONE=UI-R-CA1-bcx-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.57515.1 /TIER=ConsEnd /STK=3 /UG=Rn.57515 /UG_TITLE=ESTs BF391506 Obscurin-like 1 Obsl1 363259 XM_001062053 /// XM_343599 0055003 // cardiac myofibril assembly // not recorded 1396712_at BF396101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396101 /DB_XREF=gi:11381073 /DB_XREF=UI-R-CA1-bcb-d-01-0-UI.s1 /CLONE=UI-R-CA1-bcb-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.59203.1 /TIER=ConsEnd /STK=3 /UG=Rn.59203 /UG_TITLE=ESTs BF396101 1396713_at BE121434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121434 /DB_XREF=gi:8513539 /DB_XREF=UI-R-CA0-bax-g-09-0-UI.s1 /CLONE=UI-R-CA0-bax-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.51418.1 /TIER=ConsEnd /STK=3 /UG=Rn.51418 /UG_TITLE=ESTs BE121434 1396714_at BF394289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394289 /DB_XREF=gi:11379153 /DB_XREF=UI-R-CA0-bgr-b-12-0-UI.s1 /CLONE=UI-R-CA0-bgr-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.58225.1 /TIER=ConsEnd /STK=3 /UG=Rn.58225 /UG_TITLE=ESTs BF394289 1396715_at BF400135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400135 /DB_XREF=gi:11385146 /DB_XREF=UI-R-CA1-bjc-a-14-0-UI.s1 /CLONE=UI-R-CA1-bjc-a-14-0-UI /FEA=EST /CNT=3 /TID=Rn.59192.1 /TIER=ConsEnd /STK=3 /UG=Rn.59192 /UG_TITLE=ESTs BF400135 1396716_at BF415919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415919 /DB_XREF=gi:11403908 /DB_XREF=UI-R-CA0-bkg-h-01-0-UI.s1 /CLONE=UI-R-CA0-bkg-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.62867.1 /TIER=ConsEnd /STK=3 /UG=Rn.62867 /UG_TITLE=ESTs BF415919 RAB23, member RAS oncogene family Rab23 367242 NM_001109005 0007165 // signal transduction // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0008589 // regulation of smoothened signaling pathway // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0021513 // spinal cord dorsal/ventral patterning // not recorded /// 0042733 // embryonic digit morphogenesis // not recorded /// 0045861 // negative regulation of proteolysis // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1396717_at BF413539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413539 /DB_XREF=gi:11401528 /DB_XREF=UI-R-CA0-bof-d-11-0-UI.s1 /CLONE=UI-R-CA0-bof-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.62378.1 /TIER=ConsEnd /STK=3 /UG=Rn.62378 /UG_TITLE=ESTs BF413539 1396718_at BF392755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392755 /DB_XREF=gi:11377612 /DB_XREF=UI-R-CA0-bfm-h-04-0-UI.s1 /CLONE=UI-R-CA0-bfm-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.52256.1 /TIER=ConsEnd /STK=3 /UG=Rn.52256 /UG_TITLE=ESTs BF392755 1396719_at BF399856 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399856 /DB_XREF=gi:11384866 /DB_XREF=UI-R-CA1-bhz-g-02-0-UI.s1 /CLONE=UI-R-CA1-bhz-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.59485.1 /TIER=ConsEnd /STK=3 /UG=Rn.59485 /UG_TITLE=ESTs BF399856 1396720_at BF399270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399270 /DB_XREF=gi:11384274 /DB_XREF=UI-R-CA1-biz-j-01-0-UI.s1 /CLONE=UI-R-CA1-biz-j-01-0-UI /FEA=EST /CNT=3 /TID=Rn.57461.1 /TIER=ConsEnd /STK=3 /UG=Rn.57461 /UG_TITLE=ESTs BF399270 1396721_at BF404888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404888 /DB_XREF=gi:11392863 /DB_XREF=UI-R-CA1-bic-h-02-0-UI.s1 /CLONE=UI-R-CA1-bic-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.60610.1 /TIER=ConsEnd /STK=3 /UG=Rn.60610 /UG_TITLE=ESTs BF404888 1396722_at BF386584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386584 /DB_XREF=gi:11371408 /DB_XREF=UI-R-CA1-bbf-b-11-0-UI.s1 /CLONE=UI-R-CA1-bbf-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.61409.1 /TIER=ConsEnd /STK=3 /UG=Rn.61409 /UG_TITLE=ESTs BF386584 1396723_at BF399078 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399078 /DB_XREF=gi:11384082 /DB_XREF=UI-R-CA1-bja-n-09-0-UI.s1 /CLONE=UI-R-CA1-bja-n-09-0-UI /FEA=EST /CNT=3 /TID=Rn.59558.1 /TIER=ConsEnd /STK=3 /UG=Rn.59558 /UG_TITLE=ESTs BF399078 1396724_at BF405918 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405918 /DB_XREF=gi:11393893 /DB_XREF=UI-R-CA1-bii-e-09-0-UI.s1 /CLONE=UI-R-CA1-bii-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.59886.1 /TIER=ConsEnd /STK=3 /UG=Rn.59886 /UG_TITLE=ESTs BF405918 1396725_at BF410556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410556 /DB_XREF=gi:11398531 /DB_XREF=UI-R-CA0-bma-b-03-0-UI.s1 /CLONE=UI-R-CA0-bma-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.53124.1 /TIER=ConsEnd /STK=3 /UG=Rn.53124 /UG_TITLE=ESTs BF410556 1396726_at BF409293 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409293 /DB_XREF=gi:11397268 /DB_XREF=UI-R-CA1-ble-c-12-0-UI.s1 /CLONE=UI-R-CA1-ble-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.61304.1 /TIER=ConsEnd /STK=3 /UG=Rn.61304 /UG_TITLE=ESTs BF409293 Similar to 9630044O09Rik protein RGD1308626 361087 NM_001014139 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1396727_at BF403436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403436 /DB_XREF=gi:11391411 /DB_XREF=UI-R-CA1-biy-j-17-0-UI.s1 /CLONE=UI-R-CA1-biy-j-17-0-UI /FEA=EST /CNT=3 /TID=Rn.59182.1 /TIER=ConsEnd /STK=3 /UG=Rn.59182 /UG_TITLE=ESTs BF403436 1396728_at AI556127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556127 /DB_XREF=gi:4488490 /DB_XREF=UI-R-C2p-rf-h-02-0-UI.s1 /CLONE=UI-R-C2p-rf-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.27157.1 /TIER=ConsEnd /STK=3 /UG=Rn.27157 /UG_TITLE=ESTs AI556127 1396729_at BF387625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387625 /DB_XREF=gi:11372449 /DB_XREF=UI-R-CA1-bbs-e-03-0-UI.s1 /CLONE=UI-R-CA1-bbs-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.56561.1 /TIER=ConsEnd /STK=3 /UG=Rn.56561 /UG_TITLE=ESTs BF387625 fer-1-like 5 (C. elegans) Fer1l5 679806 XR_085913 /// XR_086337 0016021 // integral to membrane // inferred from electronic annotation 1396730_at BF391440 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391440 /DB_XREF=gi:11376293 /DB_XREF=UI-R-CA1-bcx-e-03-0-UI.s1 /CLONE=UI-R-CA1-bcx-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.63077.1 /TIER=ConsEnd /STK=3 /UG=Rn.63077 /UG_TITLE=ESTs BF391440 1396731_at BE099580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099580 /DB_XREF=gi:8491458 /DB_XREF=UI-R-BJ1-atp-a-03-0-UI.s1 /CLONE=UI-R-BJ1-atp-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.49885.1 /TIER=ConsEnd /STK=3 /UG=Rn.49885 /UG_TITLE=ESTs BE099580 Similar to hypothetical protein FLJ23263 RGD1310414 290811 NM_001013883 0005488 // binding // inferred from electronic annotation 1396732_at BF405262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405262 /DB_XREF=gi:11393237 /DB_XREF=UI-R-CA1-biw-a-13-0-UI.s1 /CLONE=UI-R-CA1-biw-a-13-0-UI /FEA=EST /CNT=3 /TID=Rn.60446.1 /TIER=ConsEnd /STK=3 /UG=Rn.60446 /UG_TITLE=ESTs BF405262 1396733_at BF399013 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399013 /DB_XREF=gi:11384017 /DB_XREF=UI-R-CA1-biz-m-12-0-UI.s1 /CLONE=UI-R-CA1-biz-m-12-0-UI /FEA=EST /CNT=3 /TID=Rn.59233.1 /TIER=ConsEnd /STK=3 /UG=Rn.59233 /UG_TITLE=ESTs BF399013 1396734_at BF394498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394498 /DB_XREF=gi:11379364 /DB_XREF=UI-R-CA0-bfw-e-11-0-UI.s1 /CLONE=UI-R-CA0-bfw-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.63023.1 /TIER=ConsEnd /STK=3 /UG=Rn.63023 /UG_TITLE=ESTs BF394498 1396735_at BF403265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403265 /DB_XREF=gi:11391240 /DB_XREF=UI-R-CA1-biy-i-21-0-UI.s1 /CLONE=UI-R-CA1-biy-i-21-0-UI /FEA=EST /CNT=3 /TID=Rn.59329.1 /TIER=ConsEnd /STK=3 /UG=Rn.59329 /UG_TITLE=ESTs BF403265 1396736_at BF409344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409344 /DB_XREF=gi:11397319 /DB_XREF=UI-R-CA1-ble-h-11-0-UI.s1 /CLONE=UI-R-CA1-ble-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.61319.1 /TIER=ConsEnd /STK=3 /UG=Rn.61319 /UG_TITLE=ESTs BF409344 1396737_at BF403249 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403249 /DB_XREF=gi:11391224 /DB_XREF=UI-R-CA1-biy-g-11-0-UI.s1 /CLONE=UI-R-CA1-biy-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.60262.1 /TIER=ConsEnd /STK=3 /UG=Rn.60262 /UG_TITLE=ESTs BF403249 structural maintenance of chromosomes flexible hinge domain containing 1 Smchd1 316732 XM_001056555 /// XM_244261 0009048 // dosage compensation, by inactivation of X chromosome // not recorded /// 0051276 // chromosome organization // inferred from electronic annotation /// 0060821 // inactivation of X chromosome by DNA methylation // not recorded 0001740 // Barr body // not recorded /// 0005694 // chromosome // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1396738_at BF392185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392185 /DB_XREF=gi:11377042 /DB_XREF=UI-R-CA0-bff-b-12-0-UI.s1 /CLONE=UI-R-CA0-bff-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.57758.1 /TIER=ConsEnd /STK=3 /UG=Rn.57758 /UG_TITLE=ESTs BF392185 1396739_at BE120455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120455 /DB_XREF=gi:8512560 /DB_XREF=UI-R-CA0-bam-f-10-0-UI.s1 /CLONE=UI-R-CA0-bam-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.62675.1 /TIER=ConsEnd /STK=3 /UG=Rn.62675 /UG_TITLE=ESTs BE120455 1396740_at AI556643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556643 /DB_XREF=gi:4489006 /DB_XREF=UI-R-C2p-ri-g-04-0-UI.s1 /CLONE=UI-R-C2p-ri-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.39224.1 /TIER=ConsEnd /STK=3 /UG=Rn.39224 /UG_TITLE=ESTs AI556643 Similar to Adenosine deaminase CG11994-PA LOC311352 311352 NM_001014047 0009168 // purine ribonucleoside monophosphate biosynthetic process // inferred from electronic annotation 0019239 // deaminase activity // inferred from electronic annotation 1396741_at BI291220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291220 /DB_XREF=gi:14950556 /DB_XREF=UI-R-CV2-cgm-f-01-0-UI.s1 /CLONE=UI-R-CV2-cgm-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.79240.1 /TIER=ConsEnd /STK=3 /UG=Rn.79240 /UG_TITLE=ESTs, Moderately similar to VIL1 MOUSE VILLIN (M.musculus) BI291220 1396742_at BI297304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297304 /DB_XREF=gi:14962552 /DB_XREF=UI-R-CV2-cgw-g-12-0-UI.s1 /CLONE=UI-R-CV2-cgw-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.79893.1 /TIER=ConsEnd /STK=3 /UG=Rn.79893 /UG_TITLE=ESTs, Highly similar to IMB3_HUMAN IMPORTIN BETA-3 SUBUNIT (H.sapiens) BI297304 importin 5 Ipo5 306182 XM_001075101 /// XM_224534 0006886 // intracellular protein transport // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation 1396743_at BF391580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391580 /DB_XREF=gi:11376433 /DB_XREF=UI-R-CA1-bcw-b-01-0-UI.s1 /CLONE=UI-R-CA1-bcw-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.57561.1 /TIER=ConsEnd /STK=3 /UG=Rn.57561 /UG_TITLE=ESTs BF391580 1396744_at BF394149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394149 /DB_XREF=gi:11379013 /DB_XREF=UI-R-CA0-bha-c-12-0-UI.s1 /CLONE=UI-R-CA0-bha-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.59617.1 /TIER=ConsEnd /STK=3 /UG=Rn.59617 /UG_TITLE=ESTs, Highly similar to NDP MOUSE NORRIE DISEASE PROTEIN HOMOLOG (M.musculus) BF394149 Norrie disease (pseudoglioma) (human) Ndp 363443 NM_001108814 0001890 // placenta development // not recorded 0005102 // receptor binding // non-traceable author statement 1396745_at BF394256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394256 /DB_XREF=gi:11379120 /DB_XREF=UI-R-CA0-bhc-f-08-0-UI.s1 /CLONE=UI-R-CA0-bhc-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.64282.1 /TIER=ConsEnd /STK=3 /UG=Rn.64282 /UG_TITLE=ESTs BF394256 1396746_at BF405991 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405991 /DB_XREF=gi:11393966 /DB_XREF=UI-R-CA1-bje-h-17-0-UI.s1 /CLONE=UI-R-CA1-bje-h-17-0-UI /FEA=EST /CNT=3 /TID=Rn.62711.1 /TIER=ConsEnd /STK=3 /UG=Rn.62711 /UG_TITLE=ESTs BF405991 1396747_at BE121159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121159 /DB_XREF=gi:8513264 /DB_XREF=UI-R-CA0-bau-g-02-0-UI.s1 /CLONE=UI-R-CA0-bau-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.53567.1 /TIER=ConsEnd /STK=3 /UG=Rn.53567 /UG_TITLE=ESTs BE121159 1396748_at BI298404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298404 /DB_XREF=gi:14974684 /DB_XREF=UI-R-CV2-cho-h-08-0-UI.s1 /CLONE=UI-R-CV2-cho-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.79897.1 /TIER=ConsEnd /STK=3 /UG=Rn.79897 /UG_TITLE=ESTs BI298404 1396749_at BF390144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390144 /DB_XREF=gi:11374987 /DB_XREF=UI-R-CA1-bcj-g-08-0-UI.s1 /CLONE=UI-R-CA1-bcj-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.56507.1 /TIER=ConsEnd /STK=3 /UG=Rn.56507 /UG_TITLE=ESTs BF390144 calcium binding protein 1 Cabp1 171051 NM_001033675 /// NM_001033676 /// NM_133529 0007275 // multicellular organismal development // inferred from electronic annotation /// 0048167 // regulation of synaptic plasticity // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from direct assay /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from direct assay /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation 1396750_at AW528700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528700 /DB_XREF=gi:7171114 /DB_XREF=UI-R-BO1-ajo-d-02-0-UI.s1 /CLONE=UI-R-BO1-ajo-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.46283.1 /TIER=ConsEnd /STK=3 /UG=Rn.46283 /UG_TITLE=ESTs AW528700 1396751_at BF403666 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403666 /DB_XREF=gi:11391641 /DB_XREF=UI-R-CA1-bix-f-08-0-UI.s1 /CLONE=UI-R-CA1-bix-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.62703.1 /TIER=ConsEnd /STK=3 /UG=Rn.62703 /UG_TITLE=ESTs BF403666 N-terminal EF-hand calcium binding protein 2 Necab2 170928 NM_133415 0017000 // antibiotic biosynthetic process // inferred from electronic annotation /// 0019722 // calcium-mediated signaling // non-traceable author statement 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1396752_at BF405147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405147 /DB_XREF=gi:11393122 /DB_XREF=UI-R-CA1-biq-c-08-0-UI.s1 /CLONE=UI-R-CA1-biq-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.60687.1 /TIER=ConsEnd /STK=3 /UG=Rn.60687 /UG_TITLE=ESTs BF405147 1396753_at BF406142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406142 /DB_XREF=gi:11394117 /DB_XREF=UI-R-CA1-bjf-e-09-0-UI.s1 /CLONE=UI-R-CA1-bjf-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.61351.1 /TIER=ConsEnd /STK=3 /UG=Rn.61351 /UG_TITLE=ESTs BF406142 1396754_at BF403379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403379 /DB_XREF=gi:11391394 /DB_XREF=UI-R-CA1-biy-h-07-0-UI.s1 /CLONE=UI-R-CA1-biy-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.64388.1 /TIER=ConsEnd /STK=3 /UG=Rn.64388 /UG_TITLE=ESTs BF403379 1396755_at BF399394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399394 /DB_XREF=gi:11384398 /DB_XREF=UI-R-CA1-bjb-o-18-0-UI.s1 /CLONE=UI-R-CA1-bjb-o-18-0-UI /FEA=EST /CNT=3 /TID=Rn.48489.1 /TIER=ConsEnd /STK=3 /UG=Rn.48489 /UG_TITLE=ESTs BF399394 1396756_at BF410531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410531 /DB_XREF=gi:11398506 /DB_XREF=UI-R-CA0-bme-g-12-0-UI.s1 /CLONE=UI-R-CA0-bme-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.53308.1 /TIER=ConsEnd /STK=3 /UG=Rn.53308 /UG_TITLE=ESTs BF410531 1396757_at BF387154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387154 /DB_XREF=gi:11371978 /DB_XREF=UI-R-CA1-bbq-b-10-0-UI.s1 /CLONE=UI-R-CA1-bbq-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.56609.1 /TIER=ConsEnd /STK=3 /UG=Rn.56609 /UG_TITLE=ESTs BF387154 1396758_at BF406200 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406200 /DB_XREF=gi:11394180 /DB_XREF=UI-R-CA1-bjf-c-16-0-UI.s1 /CLONE=UI-R-CA1-bjf-c-16-0-UI /FEA=EST /CNT=3 /TID=Rn.57563.1 /TIER=ConsEnd /STK=3 /UG=Rn.57563 /UG_TITLE=ESTs BF406200 1396759_at BF393502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393502 /DB_XREF=gi:11378363 /DB_XREF=UI-R-CA0-bfu-f-07-0-UI.s1 /CLONE=UI-R-CA0-bfu-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.58072.1 /TIER=ConsEnd /STK=3 /UG=Rn.58072 /UG_TITLE=ESTs BF393502 1396760_at BF405512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405512 /DB_XREF=gi:11393487 /DB_XREF=UI-R-CA1-biu-d-02-0-UI.s1 /CLONE=UI-R-CA1-biu-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.59896.1 /TIER=ConsEnd /STK=3 /UG=Rn.59896 /UG_TITLE=ESTs BF405512 1396761_at BF404917 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404917 /DB_XREF=gi:11392892 /DB_XREF=UI-R-CA1-bij-c-04-0-UI.s1 /CLONE=UI-R-CA1-bij-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.60529.1 /TIER=ConsEnd /STK=3 /UG=Rn.60529 /UG_TITLE=ESTs BF404917 1396762_at BF400647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400647 /DB_XREF=gi:11388622 /DB_XREF=UI-R-CA0-bhd-h-01-0-UI.s1 /CLONE=UI-R-CA0-bhd-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.61550.1 /TIER=ConsEnd /STK=3 /UG=Rn.61550 /UG_TITLE=ESTs BF400647 1396763_at BF412954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412954 /DB_XREF=gi:11400943 /DB_XREF=UI-R-CA0-boc-g-06-0-UI.s1 /CLONE=UI-R-CA0-boc-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.62204.1 /TIER=ConsEnd /STK=3 /UG=Rn.62204 /UG_TITLE=ESTs BF412954 1396764_at BF400138 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400138 /DB_XREF=gi:11385149 /DB_XREF=UI-R-CA1-bjc-a-22-0-UI.s1 /CLONE=UI-R-CA1-bjc-a-22-0-UI /FEA=EST /CNT=3 /TID=Rn.62708.1 /TIER=ConsEnd /STK=3 /UG=Rn.62708 /UG_TITLE=ESTs BF400138 1396765_at BF390955 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390955 /DB_XREF=gi:11375802 /DB_XREF=UI-R-CA1-bce-e-04-0-UI.s1 /CLONE=UI-R-CA1-bce-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.62728.1 /TIER=ConsEnd /STK=3 /UG=Rn.62728 /UG_TITLE=ESTs BF390955 similar to GTPase activating RANGAP domain-like 3 RGD1564019 499783 XM_001078585 /// XM_002729156 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005083 // small GTPase regulator activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation 1396766_at BF404488 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404488 /DB_XREF=gi:11392463 /DB_XREF=UI-R-CA1-bif-h-11-0-UI.s1 /CLONE=UI-R-CA1-bif-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.63278.1 /TIER=ConsEnd /STK=3 /UG=Rn.63278 /UG_TITLE=ESTs, Weakly similar to CDV1 MOUSE CARNITINE DEFICIENCY-ASSOCIATED PROTEIN EXPRESSED IN VENTRICLE 1 (M.musculus) BF404488 intraflagellar transport 81 homolog (Chlamydomonas) Ift81 373066 NM_199120 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0007283 // spermatogenesis // inferred from sequence or structural similarity /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005813 // centrosome // not recorded /// 0005929 // cilium // not recorded 1396767_at BF401424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401424 /DB_XREF=gi:11389399 /DB_XREF=UI-R-CA0-bgt-e-02-0-UI.s1 /CLONE=UI-R-CA0-bgt-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.63375.1 /TIER=ConsEnd /STK=3 /UG=Rn.63375 /UG_TITLE=ESTs BF401424 1396768_at BF404627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404627 /DB_XREF=gi:11392602 /DB_XREF=UI-R-CA1-bih-g-04-0-UI.s1 /CLONE=UI-R-CA1-bih-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.64355.1 /TIER=ConsEnd /STK=3 /UG=Rn.64355 /UG_TITLE=ESTs BF404627 1396769_at AW527250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527250 /DB_XREF=gi:7169664 /DB_XREF=UI-R-BO1-ajs-b-11-0-UI.s1 /CLONE=UI-R-BO1-ajs-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.46024.1 /TIER=ConsEnd /STK=3 /UG=Rn.46024 /UG_TITLE=ESTs AW527250 1396770_at BE099410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099410 /DB_XREF=gi:8491326 /DB_XREF=UI-R-BJ1-atw-e-10-0-UI.s1 /CLONE=UI-R-BJ1-atw-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.49872.1 /TIER=ConsEnd /STK=3 /UG=Rn.49872 /UG_TITLE=ESTs BE099410 1396771_at BE107504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107504 /DB_XREF=gi:8499609 /DB_XREF=UI-R-BS1-ayu-e-03-0-UI.s1 /CLONE=UI-R-BS1-ayu-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.51185.1 /TIER=ConsEnd /STK=3 /UG=Rn.51185 /UG_TITLE=ESTs BE107504 1396772_at BE116581 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116581 /DB_XREF=gi:8508686 /DB_XREF=UI-R-BS1-ayj-h-07-0-UI.s1 /CLONE=UI-R-BS1-ayj-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.51201.1 /TIER=ConsEnd /STK=3 /UG=Rn.51201 /UG_TITLE=ESTs BE116581 1396773_at BF391930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391930 /DB_XREF=gi:11376787 /DB_XREF=UI-R-CA0-bfh-c-05-0-UI.s1 /CLONE=UI-R-CA0-bfh-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.53113.1 /TIER=ConsEnd /STK=3 /UG=Rn.53113 /UG_TITLE=ESTs BF391930 1396774_at BF390846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390846 /DB_XREF=gi:11375693 /DB_XREF=UI-R-CA1-bci-b-06-0-UI.s1 /CLONE=UI-R-CA1-bci-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.57299.1 /TIER=ConsEnd /STK=3 /UG=Rn.57299 /UG_TITLE=ESTs BF390846 1396775_at BF403583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403583 /DB_XREF=gi:11391558 /DB_XREF=UI-R-CA1-bjd-f-12-0-UI.s1 /CLONE=UI-R-CA1-bjd-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.57462.1 /TIER=ConsEnd /STK=3 /UG=Rn.57462 /UG_TITLE=ESTs BF403583 1396776_at BF392898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392898 /DB_XREF=gi:11377757 /DB_XREF=UI-R-CA0-bfq-e-07-0-UI.s1 /CLONE=UI-R-CA0-bfq-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.57964.1 /TIER=ConsEnd /STK=3 /UG=Rn.57964 /UG_TITLE=ESTs BF392898 1396777_at BF401331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401331 /DB_XREF=gi:11389306 /DB_XREF=UI-R-CA0-bgs-d-10-0-UI.s1 /CLONE=UI-R-CA0-bgs-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.59783.1 /TIER=ConsEnd /STK=3 /UG=Rn.59783 /UG_TITLE=ESTs BF401331 1396778_at BF401043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401043 /DB_XREF=gi:11389018 /DB_XREF=UI-R-CA0-bgh-a-01-0-UI.s1 /CLONE=UI-R-CA0-bgh-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.59822.1 /TIER=ConsEnd /STK=3 /UG=Rn.59822 /UG_TITLE=ESTs BF401043 1396779_at BF402702 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402702 /DB_XREF=gi:11390677 /DB_XREF=UI-R-CA0-bho-e-12-0-UI.s1 /CLONE=UI-R-CA0-bho-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.60108.1 /TIER=ConsEnd /STK=3 /UG=Rn.60108 /UG_TITLE=ESTs BF402702 1396780_at BF403974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403974 /DB_XREF=gi:11391949 /DB_XREF=UI-R-CA1-bjd-a-06-0-UI.s1 /CLONE=UI-R-CA1-bjd-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.60404.1 /TIER=ConsEnd /STK=3 /UG=Rn.60404 /UG_TITLE=ESTs BF403974 1396781_at BF387291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387291 /DB_XREF=gi:11372115 /DB_XREF=UI-R-CA1-bbl-g-06-0-UI.s1 /CLONE=UI-R-CA1-bbl-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.60463.1 /TIER=ConsEnd /STK=3 /UG=Rn.60463 /UG_TITLE=ESTs BF387291 1396782_at BF404815 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404815 /DB_XREF=gi:11392790 /DB_XREF=UI-R-CA1-bic-a-04-0-UI.s1 /CLONE=UI-R-CA1-bic-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.60592.1 /TIER=ConsEnd /STK=3 /UG=Rn.60592 /UG_TITLE=ESTs BF404815 1396783_at BF417894 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417894 /DB_XREF=gi:11405883 /DB_XREF=UI-R-CA1-blu-e-09-0-UI.s1 /CLONE=UI-R-CA1-blu-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.61626.1 /TIER=ConsEnd /STK=3 /UG=Rn.61626 /UG_TITLE=ESTs BF417894 1396784_at BF413768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413768 /DB_XREF=gi:11401757 /DB_XREF=UI-R-CA0-boi-c-12-0-UI.s1 /CLONE=UI-R-CA0-boi-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.62452.1 /TIER=ConsEnd /STK=3 /UG=Rn.62452 /UG_TITLE=ESTs BF413768 1396785_at BF419700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419700 /DB_XREF=gi:11407689 /DB_XREF=UI-R-CA0-bpf-c-04-0-UI.s1 /CLONE=UI-R-CA0-bpf-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.63612.1 /TIER=ConsEnd /STK=3 /UG=Rn.63612 /UG_TITLE=ESTs BF419700 1396786_at BF409338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409338 /DB_XREF=gi:11397313 /DB_XREF=UI-R-CA1-ble-h-05-0-UI.s1 /CLONE=UI-R-CA1-ble-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.64343.1 /TIER=ConsEnd /STK=3 /UG=Rn.64343 /UG_TITLE=ESTs BF409338 1396787_at BF404914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404914 /DB_XREF=gi:11392889 /DB_XREF=UI-R-CA1-bij-c-01-0-UI.s1 /CLONE=UI-R-CA1-bij-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.59962.1 /TIER=ConsEnd /STK=3 /UG=Rn.59962 /UG_TITLE=ESTs BF404914 1396788_at BF391375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391375 /DB_XREF=gi:11376228 /DB_XREF=UI-R-CA1-bcr-f-04-0-UI.s1 /CLONE=UI-R-CA1-bcr-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.57555.1 /TIER=ConsEnd /STK=3 /UG=Rn.57555 /UG_TITLE=ESTs, Weakly similar to ZF93_MOUSE ZINC FINGER PROTEIN 93 (ZFP-93) (M.musculus) BF391375 rCG41957-like LOC100365542 100365542 XM_002725468 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation 1396789_x_at BF391375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391375 /DB_XREF=gi:11376228 /DB_XREF=UI-R-CA1-bcr-f-04-0-UI.s1 /CLONE=UI-R-CA1-bcr-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.57555.1 /TIER=ConsEnd /STK=3 /UG=Rn.57555 /UG_TITLE=ESTs, Weakly similar to ZF93_MOUSE ZINC FINGER PROTEIN 93 (ZFP-93) (M.musculus) BF391375 rCG41957-like LOC100365542 100365542 XM_002725468 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation 1396790_at BF404788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404788 /DB_XREF=gi:11392763 /DB_XREF=UI-R-CA1-bid-f-05-0-UI.s1 /CLONE=UI-R-CA1-bid-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.61434.1 /TIER=ConsEnd /STK=3 /UG=Rn.61434 /UG_TITLE=ESTs BF404788 1396791_at BF392129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392129 /DB_XREF=gi:11376986 /DB_XREF=UI-R-CA0-bfe-e-11-0-UI.s1 /CLONE=UI-R-CA0-bfe-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.51754.1 /TIER=ConsEnd /STK=3 /UG=Rn.51754 /UG_TITLE=ESTs BF392129 1396792_at BF392277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392277 /DB_XREF=gi:11377134 /DB_XREF=UI-R-CA0-bfn-b-11-0-UI.s1 /CLONE=UI-R-CA0-bfn-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.58283.1 /TIER=ConsEnd /STK=3 /UG=Rn.58283 /UG_TITLE=ESTs BF392277 1396793_at BE121129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121129 /DB_XREF=gi:8513234 /DB_XREF=UI-R-CA0-bau-d-06-0-UI.s1 /CLONE=UI-R-CA0-bau-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.53406.1 /TIER=ConsEnd /STK=3 /UG=Rn.53406 /UG_TITLE=ESTs, Moderately similar to S55552 LAR-interacting protein LIP1a (H.sapiens) BE121129 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 Ppfia2 362876 NM_001108745 0019717 // synaptosome // not recorded 0005515 // protein binding // not recorded 1396794_at BE119143 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119143 /DB_XREF=gi:8511248 /DB_XREF=UI-R-CA0-azz-a-06-0-UI.s1 /CLONE=UI-R-CA0-azz-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.53907.1 /TIER=ConsEnd /STK=3 /UG=Rn.53907 /UG_TITLE=ESTs BE119143 1396795_at BF399428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399428 /DB_XREF=gi:11384432 /DB_XREF=UI-R-CA1-bjb-h-07-0-UI.s1 /CLONE=UI-R-CA1-bjb-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.59374.1 /TIER=ConsEnd /STK=3 /UG=Rn.59374 /UG_TITLE=ESTs BF399428 1396796_at BF392949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392949 /DB_XREF=gi:11377809 /DB_XREF=UI-R-CA0-bfr-b-01-0-UI.s1 /CLONE=UI-R-CA0-bfr-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.57804.1 /TIER=ConsEnd /STK=3 /UG=Rn.57804 /UG_TITLE=ESTs BF392949 1396797_at BE097365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097365 /DB_XREF=gi:8488296 /DB_XREF=UI-R-BO1-apq-e-10-0-UI.s1 /CLONE=UI-R-BO1-apq-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.49599.1 /TIER=ConsEnd /STK=3 /UG=Rn.49599 /UG_TITLE=ESTs, Weakly similar to PCB3_MOUSE POLY(RC)-BINDING PROTEIN 3 (ALPHA-CP3) (M.musculus) BE097365 neuro-oncological ventral antigen 2 Nova2 292681 XM_001075246 /// XM_002728713 0003723 // RNA binding // inferred from electronic annotation 1396798_at BF386659 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386659 /DB_XREF=gi:11371483 /DB_XREF=UI-R-CA1-bbg-a-04-0-UI.s1 /CLONE=UI-R-CA1-bbg-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.56551.1 /TIER=ConsEnd /STK=3 /UG=Rn.56551 /UG_TITLE=ESTs BF386659 1396799_at AI716266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716266 /DB_XREF=gi:5033519 /DB_XREF=UI-R-Y0-abr-g-07-0-UI.s1 /CLONE=UI-R-Y0-abr-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.41518.1 /TIER=ConsEnd /STK=3 /UG=Rn.41518 /UG_TITLE=ESTs AI716266 1396800_at BF410358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410358 /DB_XREF=gi:11398338 /DB_XREF=UI-R-CA1-bjw-f-04-0-UI.s1 /CLONE=UI-R-CA1-bjw-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.61677.1 /TIER=ConsEnd /STK=3 /UG=Rn.61677 /UG_TITLE=ESTs BF410358 1396801_at AI764598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764598 /DB_XREF=gi:5210533 /DB_XREF=UI-R-Y0-abv-h-01-0-UI.s2 /CLONE=UI-R-Y0-abv-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.26811.1 /TIER=ConsEnd /STK=3 /UG=Rn.26811 /UG_TITLE=ESTs AI764598 1396802_at BE107937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107937 /DB_XREF=gi:8500042 /DB_XREF=UI-R-CA0-awy-e-06-0-UI.s1 /CLONE=UI-R-CA0-awy-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.51350.1 /TIER=ConsEnd /STK=3 /UG=Rn.51350 /UG_TITLE=ESTs BE107937 1396803_at BE117119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117119 /DB_XREF=gi:8509224 /DB_XREF=UI-R-BS1-aym-a-10-0-UI.s1 /CLONE=UI-R-BS1-aym-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.51674.1 /TIER=ConsEnd /STK=3 /UG=Rn.51674 /UG_TITLE=ESTs BE117119 THO complex 2 Thoc2 313308 NM_001191756 /// XM_001058768 /// XM_233081 0006406 // mRNA export from nucleus // not recorded /// 0046784 // intronless viral mRNA export from host nucleus // not recorded 0000346 // transcription export complex // not recorded /// 0000347 // THO complex // not recorded /// 0000445 // THO complex part of transcription export complex // not recorded 0005515 // protein binding // not recorded 1396804_at BM386455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386455 /DB_XREF=gi:18186508 /DB_XREF=UI-R-CN1-cjg-c-15-0-UI.s1 /CLONE=UI-R-CN1-cjg-c-15-0-UI /FEA=EST /CNT=3 /TID=Rn.82552.1 /TIER=ConsEnd /STK=3 /UG=Rn.82552 /UG_TITLE=ESTs BM386455 1396805_at BF391383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391383 /DB_XREF=gi:11376236 /DB_XREF=UI-R-CA1-bcr-g-01-0-UI.s1 /CLONE=UI-R-CA1-bcr-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.57487.1 /TIER=ConsEnd /STK=3 /UG=Rn.57487 /UG_TITLE=ESTs BF391383 1396806_at BF411811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411811 /DB_XREF=gi:11399800 /DB_XREF=UI-R-BT1-bmw-e-03-0-UI.s1 /CLONE=UI-R-BT1-bmw-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.61931.1 /TIER=ConsEnd /STK=3 /UG=Rn.61931 /UG_TITLE=ESTs BF411811 1396807_at AI577388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577388 /DB_XREF=gi:4561764 /DB_XREF=UI-R-Y0-vn-g-04-0-UI.s1 /CLONE=UI-R-Y0-vn-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.38924.1 /TIER=ConsEnd /STK=2 /UG=Rn.38924 /UG_TITLE=ESTs AI577388 1396808_at AI501314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501314 /DB_XREF=gi:4399165 /DB_XREF=UI-R-C2p-ru-h-02-0-UI.s1 /CLONE=UI-R-C2p-ru-h-02-0-UI /FEA=EST /CNT=4 /TID=Rn.27075.1 /TIER=ConsEnd /STK=2 /UG=Rn.27075 /UG_TITLE=ESTs AI501314 1396809_at AI712958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712958 /DB_XREF=gi:5016758 /DB_XREF=UI-R-Y0-abb-e-11-0-UI.s1 /CLONE=UI-R-Y0-abb-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.41126.1 /TIER=ConsEnd /STK=2 /UG=Rn.41126 /UG_TITLE=ESTs AI712958 1396810_at AI578423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578423 /DB_XREF=gi:4562799 /DB_XREF=UI-R-Y0-uz-b-03-0-UI.s3 /CLONE=UI-R-Y0-uz-b-03-0-UI /FEA=EST /CNT=4 /TID=Rn.39149.1 /TIER=ConsEnd /STK=2 /UG=Rn.39149 /UG_TITLE=ESTs AI578423 1396811_at AI111472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111472 /DB_XREF=gi:3511514 /DB_XREF=UI-R-Y0-lz-e-12-0-UI.s1 /CLONE=UI-R-Y0-lz-e-12-0-UI /FEA=EST /CNT=4 /TID=Rn.26588.1 /TIER=ConsEnd /STK=2 /UG=Rn.26588 /UG_TITLE=ESTs AI111472 1396812_at BF547253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547253 /DB_XREF=gi:11638360 /DB_XREF=UI-R-C2p-ql-g-02-0-UI.r1 /CLONE=UI-R-C2p-ql-g-02-0-UI /FEA=EST /CNT=4 /TID=Rn.36475.1 /TIER=ConsEnd /STK=2 /UG=Rn.36475 /UG_TITLE=ESTs BF547253 Ribosomal protein L24 Rpl24 64307 NM_022515 0000027 // ribosomal large subunit assembly // inferred from electronic annotation /// 0000027 // ribosomal large subunit assembly // not recorded /// 0006412 // translation // inferred by curator /// 0006412 // translation // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0010458 // exit from mitosis // inferred from electronic annotation /// 0010458 // exit from mitosis // not recorded /// 0021554 // optic nerve development // inferred from electronic annotation /// 0021554 // optic nerve development // not recorded /// 0031290 // retinal ganglion cell axon guidance // inferred from electronic annotation /// 0031290 // retinal ganglion cell axon guidance // not recorded /// 0031575 // mitotic cell cycle G1/S transition checkpoint // inferred from electronic annotation /// 0031575 // mitotic cell cycle G1/S transition checkpoint // not recorded /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from direct assay /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396813_at AW528749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528749 /DB_XREF=gi:7171163 /DB_XREF=UI-R-BO1-ajo-h-04-0-UI.s1 /CLONE=UI-R-BO1-ajo-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.46994.1 /TIER=ConsEnd /STK=2 /UG=Rn.46994 /UG_TITLE=ESTs AW528749 1396814_at BE106907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106907 /DB_XREF=gi:8499009 /DB_XREF=UI-R-BT1-asu-e-12-0-UI.s1 /CLONE=UI-R-BT1-asu-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.49112.1 /TIER=ConsEnd /STK=2 /UG=Rn.49112 /UG_TITLE=ESTs BE106907 1396815_at AW251438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251438 /DB_XREF=gi:6595029 /DB_XREF=UI-R-BJ0-adm-b-12-0-UI.s1 /CLONE=UI-R-BJ0-adm-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.44772.1 /TIER=ConsEnd /STK=2 /UG=Rn.44772 /UG_TITLE=ESTs AW251438 1396816_at BE107655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107655 /DB_XREF=gi:8499760 /DB_XREF=UI-R-BT1-ame-c-04-0-UI.s1 /CLONE=UI-R-BT1-ame-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.47159.1 /TIER=ConsEnd /STK=2 /UG=Rn.47159 /UG_TITLE=ESTs BE107655 1396817_at AI599545 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599545 /DB_XREF=gi:4608593 /DB_XREF=EST251248 /CLONE=REMET37 /FEA=EST /CNT=3 /TID=Rn.40436.1 /TIER=ConsEnd /STK=2 /UG=Rn.40436 /UG_TITLE=ESTs AI599545 1396818_at AI111504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111504 /DB_XREF=gi:3511546 /DB_XREF=UI-R-Y0-ma-a-07-0-UI.s1 /CLONE=UI-R-Y0-ma-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.26594.1 /TIER=ConsEnd /STK=2 /UG=Rn.26594 /UG_TITLE=ESTs AI111504 1396819_at AW533965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533965 /DB_XREF=gi:7176339 /DB_XREF=UI-R-C4-alw-g-03-0-UI.s1 /CLONE=UI-R-C4-alw-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.48209.1 /TIER=ConsEnd /STK=2 /UG=Rn.48209 /UG_TITLE=ESTs AW533965 Asparaginyl-tRNA synthetase Nars 291556 NM_001025635 /// NM_001142949 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006421 // asparaginyl-tRNA aminoacylation // inferred from electronic annotation /// 0006422 // aspartyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004815 // aspartate-tRNA ligase activity // inferred from electronic annotation /// 0004816 // asparagine-tRNA ligase activity // inferred from electronic annotation /// 0004816 // asparagine-tRNA ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1396820_at AW530195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530195 /DB_XREF=gi:7172609 /DB_XREF=UI-R-C4-ale-f-12-0-UI.s1 /CLONE=UI-R-C4-ale-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.47399.1 /TIER=ConsEnd /STK=2 /UG=Rn.47399 /UG_TITLE=ESTs, Highly similar to HDA1 MOUSE HISTONE DEACETYLASE 1 (M.musculus) AW530195 histone deacetylase 1 Hdac1 297893 NM_001025409 0006350 // transcription // inferred from electronic annotation /// 0006476 // protein deacetylation // not recorded /// 0007492 // endoderm development // inferred from electronic annotation /// 0007492 // endoderm development // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from direct assay /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010832 // negative regulation of myotube differentiation // not recorded /// 0010870 // positive regulation of receptor biosynthetic process // not recorded /// 0016481 // negative regulation of transcription // inferred from direct assay /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016575 // histone deacetylation // not recorded /// 0016575 // histone deacetylation // inferred from electronic annotation /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0034599 // cellular response to oxidative stress // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0043524 // negative regulation of neuron apoptosis // inferred from mutant phenotype /// 0043922 // negative regulation by host of viral transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // not recorded /// 0070932 // histone H3 deacetylation // inferred from mutant phenotype /// 0070932 // histone H3 deacetylation // not recorded /// 0070933 // histone H4 deacetylation // not recorded 0000118 // histone deacetylase complex // not recorded /// 0000785 // chromatin // inferred from direct assay /// 0000792 // heterochromatin // inferred from electronic annotation /// 0000792 // heterochromatin // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016580 // Sin3 complex // not recorded /// 0016581 // NuRD complex // inferred from electronic annotation /// 0016581 // NuRD complex // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043025 // neuronal cell body // not recorded /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0004407 // histone deacetylase activity // inferred from mutant phenotype /// 0004407 // histone deacetylase activity // not recorded /// 0004407 // histone deacetylase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // inferred from direct assay /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0032403 // protein complex binding // inferred from direct assay /// 0033558 // protein deacetylase activity // not recorded /// 0042802 // identical protein binding // not recorded /// 0042826 // histone deacetylase binding // not recorded 1396821_at AW523396 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523396 /DB_XREF=gi:7165781 /DB_XREF=UI-R-BO0-aif-g-06-0-UI.s1 /CLONE=UI-R-BO0-aif-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.45624.1 /TIER=ConsEnd /STK=2 /UG=Rn.45624 /UG_TITLE=ESTs AW523396 1396822_at BE113214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113214 /DB_XREF=gi:8505319 /DB_XREF=UI-R-BJ1-awc-h-06-0-UI.s1 /CLONE=UI-R-BJ1-awc-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.51980.1 /TIER=ConsEnd /STK=2 /UG=Rn.51980 /UG_TITLE=ESTs BE113214 zinc finger and BTB domain containing 2 Zbtb2 308126 NM_001107460 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1396823_at BF409093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409093 /DB_XREF=gi:11397068 /DB_XREF=UI-R-BT1-bkl-h-07-0-UI.s1 /CLONE=UI-R-BT1-bkl-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.64208.1 /TIER=ConsEnd /STK=2 /UG=Rn.64208 /UG_TITLE=ESTs BF409093 1396824_at AI385369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385369 /DB_XREF=gi:4198151 /DB_XREF=UI-R-C2-mu-f-11-0-UI.s2 /CLONE=UI-R-C2-mu-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.33477.1 /TIER=ConsEnd /STK=2 /UG=Rn.33477 /UG_TITLE=ESTs AI385369 1396825_at AW530578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530578 /DB_XREF=gi:7172992 /DB_XREF=UI-R-BT1-akp-g-08-0-UI.s1 /CLONE=UI-R-BT1-akp-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.47471.1 /TIER=ConsEnd /STK=2 /UG=Rn.47471 /UG_TITLE=ESTs AW530578 1396826_at AW522542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522542 /DB_XREF=gi:7164927 /DB_XREF=UI-R-BO0-aha-g-05-0-UI.s1 /CLONE=UI-R-BO0-aha-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.45403.1 /TIER=ConsEnd /STK=2 /UG=Rn.45403 /UG_TITLE=ESTs AW522542 1396827_at AI454552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454552 /DB_XREF=gi:4294525 /DB_XREF=UI-R-BT0-pw-d-07-0-UI.s1 /CLONE=UI-R-BT0-pw-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.36579.1 /TIER=ConsEnd /STK=2 /UG=Rn.36579 /UG_TITLE=ESTs AI454552 1396828_at AW524520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524520 /DB_XREF=gi:7166905 /DB_XREF=UI-R-BO0-ahz-d-06-0-UI.s1 /CLONE=UI-R-BO0-ahz-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.45422.1 /TIER=ConsEnd /STK=2 /UG=Rn.45422 /UG_TITLE=ESTs AW524520 1396829_at AW523421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523421 /DB_XREF=gi:7165806 /DB_XREF=UI-R-BO0-aho-a-07-0-UI.s1 /CLONE=UI-R-BO0-aho-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.45635.1 /TIER=ConsEnd /STK=2 /UG=Rn.45635 /UG_TITLE=ESTs AW523421 1396830_at AW527558 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527558 /DB_XREF=gi:7169972 /DB_XREF=UI-R-BO1-ajv-f-07-0-UI.s1 /CLONE=UI-R-BO1-ajv-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.46332.1 /TIER=ConsEnd /STK=2 /UG=Rn.46332 /UG_TITLE=ESTs AW527558 1396831_at AI501417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501417 /DB_XREF=gi:4399268 /DB_XREF=UI-R-C2p-sa-g-11-0-UI.s1 /CLONE=UI-R-C2p-sa-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.27194.1 /TIER=ConsEnd /STK=2 /UG=Rn.27194 /UG_TITLE=ESTs AI501417 1396832_at BE095868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095868 /DB_XREF=gi:8486799 /DB_XREF=UI-R-BU0-apb-e-07-0-UI.s1 /CLONE=UI-R-BU0-apb-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.49197.1 /TIER=ConsEnd /STK=2 /UG=Rn.49197 /UG_TITLE=ESTs BE095868 Type II keratin Kb15 Kb15 366992 NM_001008825 0005882 // intermediate filament // inferred from electronic annotation /// 0045095 // keratin filament // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 1396833_at AW528601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528601 /DB_XREF=gi:7171015 /DB_XREF=UI-R-BO1-ajr-c-03-0-UI.s1 /CLONE=UI-R-BO1-ajr-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.46935.1 /TIER=ConsEnd /STK=2 /UG=Rn.46935 /UG_TITLE=ESTs AW528601 1396834_at AW529263 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529263 /DB_XREF=gi:7171677 /DB_XREF=UI-R-BT1-akd-h-10-0-UI.s1 /CLONE=UI-R-BT1-akd-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.47136.1 /TIER=ConsEnd /STK=2 /UG=Rn.47136 /UG_TITLE=ESTs AW529263 1396835_at BE095505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095505 /DB_XREF=gi:8486436 /DB_XREF=UI-R-BU0-apa-d-08-0-UI.s1 /CLONE=UI-R-BU0-apa-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.48182.1 /TIER=ConsEnd /STK=2 /UG=Rn.48182 /UG_TITLE=ESTs BE095505 1396836_at AI501570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501570 /DB_XREF=gi:4399421 /DB_XREF=UI-R-C2p-sc-g-01-0-UI.s1 /CLONE=UI-R-C2p-sc-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.35520.1 /TIER=ConsEnd /STK=2 /UG=Rn.35520 /UG_TITLE=ESTs AI501570 1396837_at AI579389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI579389 /DB_XREF=gi:4563765 /DB_XREF=UI-R-Y0-vo-h-05-0-UI.s2 /CLONE=UI-R-Y0-vo-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.41941.1 /TIER=ConsEnd /STK=2 /UG=Rn.41941 /UG_TITLE=ESTs AI579389 1396838_at AW529152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529152 /DB_XREF=gi:7171566 /DB_XREF=UI-R-BO1-ajp-f-04-0-UI.s1 /CLONE=UI-R-BO1-ajp-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.46365.1 /TIER=ConsEnd /STK=2 /UG=Rn.46365 /UG_TITLE=ESTs AW529152 1396839_at BE101807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101807 /DB_XREF=gi:8493905 /DB_XREF=UI-R-BT1-aqh-f-02-0-UI.s1 /CLONE=UI-R-BT1-aqh-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.47746.1 /TIER=ConsEnd /STK=2 /UG=Rn.47746 /UG_TITLE=ESTs BE101807 1396840_at AI716493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716493 /DB_XREF=gi:5033746 /DB_XREF=UI-R-Y0-ach-g-02-0-UI.s1 /CLONE=UI-R-Y0-ach-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.26695.1 /TIER=ConsEnd /STK=2 /UG=Rn.26695 /UG_TITLE=ESTs AI716493 1396841_at AI556345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556345 /DB_XREF=gi:4488708 /DB_XREF=UI-R-C2p-rg-d-01-0-UI.s1 /CLONE=UI-R-C2p-rg-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.39017.1 /TIER=ConsEnd /STK=2 /UG=Rn.39017 /UG_TITLE=ESTs AI556345 1396842_at AI500903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI500903 /DB_XREF=gi:4398754 /DB_XREF=UI-R-C2p-rn-a-07-0-UI.s1 /CLONE=UI-R-C2p-rn-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.35248.1 /TIER=ConsEnd /STK=2 /UG=Rn.35248 /UG_TITLE=ESTs AI500903 ATG9 autophagy related 9 homolog A (S. cerevisiae) Atg9a 363254 NM_001014218 0000045 // autophagic vacuole assembly // inferred from electronic annotation /// 0000045 // autophagic vacuole assembly // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006914 // autophagy // inferred from expression pattern /// 0006914 // autophagy // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0000421 // autophagic vacuole membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005776 // autophagic vacuole // not recorded /// 0005776 // autophagic vacuole // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 1396843_at AI145781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145781 /DB_XREF=gi:3667580 /DB_XREF=UI-R-BT0-qi-a-08-0-UI.s1 /CLONE=UI-R-BT0-qi-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.28613.1 /TIER=ConsEnd /STK=2 /UG=Rn.28613 /UG_TITLE=ESTs AI145781 1396844_at AI547818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547818 /DB_XREF=gi:4465306 /DB_XREF=UI-R-C3-sk-c-04-0-UI.s1 /CLONE=UI-R-C3-sk-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.43576.1 /TIER=ConsEnd /STK=2 /UG=Rn.43576 /UG_TITLE=ESTs AI547818 1396845_at AW526217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526217 /DB_XREF=gi:7168602 /DB_XREF=UI-R-BO1-aju-e-02-0-UI.s1 /CLONE=UI-R-BO1-aju-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.46122.1 /TIER=ConsEnd /STK=2 /UG=Rn.46122 /UG_TITLE=ESTs, Weakly similar to T08680 hypothetical protein DKFZp564P0622.1 (H.sapiens) AW526217 F-box and leucine-rich repeat protein 20 Fbxl20 64039 NM_022272 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1396846_at AW527501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527501 /DB_XREF=gi:7169915 /DB_XREF=UI-R-BO1-ajv-a-07-0-UI.s1 /CLONE=UI-R-BO1-ajv-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.46554.1 /TIER=ConsEnd /STK=2 /UG=Rn.46554 /UG_TITLE=ESTs AW527501 1396847_at AI454925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454925 /DB_XREF=gi:4297135 /DB_XREF=UI-R-C2p-ql-d-09-0-UI.s1 /CLONE=UI-R-C2p-ql-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.35151.1 /TIER=ConsEnd /STK=2 /UG=Rn.35151 /UG_TITLE=ESTs AI454925 1396848_at AI385363 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385363 /DB_XREF=gi:4198145 /DB_XREF=UI-R-C2-mu-e-10-0-UI.s2 /CLONE=UI-R-C2-mu-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.34385.1 /TIER=ConsEnd /STK=2 /UG=Rn.34385 /UG_TITLE=ESTs AI385363 1396849_at AW534332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534332 /DB_XREF=gi:7176746 /DB_XREF=UI-R-C4-alo-b-05-0-UI.s1 /CLONE=UI-R-C4-alo-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.48310.1 /TIER=ConsEnd /STK=2 /UG=Rn.48310 /UG_TITLE=ESTs AW534332 1396850_at AI501434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501434 /DB_XREF=gi:4399285 /DB_XREF=UI-R-C2p-sb-a-12-0-UI.s1 /CLONE=UI-R-C2p-sb-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.35350.1 /TIER=ConsEnd /STK=2 /UG=Rn.35350 /UG_TITLE=ESTs AI501434 1396851_at AI556069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556069 /DB_XREF=gi:4488432 /DB_XREF=UI-R-C2p-re-g-11-0-UI.s1 /CLONE=UI-R-C2p-re-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.38837.1 /TIER=ConsEnd /STK=2 /UG=Rn.38837 /UG_TITLE=ESTs AI556069 1396852_at AW532366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532366 /DB_XREF=gi:7174780 /DB_XREF=UI-R-BT1-akc-f-02-0-UI.s1 /CLONE=UI-R-BT1-akc-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.50363.1 /TIER=ConsEnd /STK=2 /UG=Rn.50363 /UG_TITLE=ESTs AW532366 1396853_at AI549156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549156 /DB_XREF=gi:4466644 /DB_XREF=UI-R-C3-ts-c-07-0-UI.s1 /CLONE=UI-R-C3-ts-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.81245.1 /TIER=ConsEnd /STK=2 /UG=Rn.81245 /UG_TITLE=ESTs AI549156 adrenergic, alpha-2B-, receptor Adra2b 24174 NM_138505 0000165 // MAPKKK cascade // not recorded /// 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000187 // activation of MAPK activity // inferred from mutant phenotype /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0003056 // regulation of vascular smooth muscle contraction // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0032148 // activation of protein kinase B activity // not recorded /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045777 // positive regulation of blood pressure // inferred from mutant phenotype /// 0070474 // positive regulation of uterine smooth muscle contraction // inferred from mutant phenotype 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004935 // adrenergic receptor activity // inferred from electronic annotation /// 0004935 // adrenergic receptor activity // not recorded /// 0004938 // alpha2-adrenergic receptor activity // inferred from direct assay /// 0004938 // alpha2-adrenergic receptor activity // not recorded /// 0004938 // alpha2-adrenergic receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051379 // epinephrine binding // not recorded 1396854_at BE102681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102681 /DB_XREF=gi:8494780 /DB_XREF=UI-R-BT1-aqs-h-01-0-UI.s1 /CLONE=UI-R-BT1-aqs-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.49139.1 /TIER=ConsEnd /STK=2 /UG=Rn.49139 /UG_TITLE=ESTs BE102681 1396855_at AW528402 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528402 /DB_XREF=gi:7170816 /DB_XREF=UI-R-BO1-ajl-a-06-0-UI.s1 /CLONE=UI-R-BO1-ajl-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.46865.1 /TIER=ConsEnd /STK=2 /UG=Rn.46865 /UG_TITLE=ESTs AW528402 1396856_at AW528716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528716 /DB_XREF=gi:7171130 /DB_XREF=UI-R-BO1-ajo-e-06-0-UI.s1 /CLONE=UI-R-BO1-ajo-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.49137.1 /TIER=ConsEnd /STK=2 /UG=Rn.49137 /UG_TITLE=ESTs AW528716 1396857_at AW140998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW140998 /DB_XREF=gi:6160766 /DB_XREF=EST291011 /CLONE=RGIAX67 /FEA=EST /CNT=3 /TID=Rn.43995.1 /TIER=ConsEnd /STK=2 /UG=Rn.43995 /UG_TITLE=ESTs, Moderately similar to POR2 RAT VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 2 (R.norvegicus) AW140998 1396858_at BF412454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412454 /DB_XREF=gi:11400443 /DB_XREF=UI-R-BT1-bnd-e-06-0-UI.s1 /CLONE=UI-R-BT1-bnd-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.46651.1 /TIER=ConsEnd /STK=2 /UG=Rn.46651 /UG_TITLE=ESTs BF412454 1396859_at AW529230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529230 /DB_XREF=gi:7171644 /DB_XREF=UI-R-BT1-akd-e-07-0-UI.s1 /CLONE=UI-R-BT1-akd-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.47128.1 /TIER=ConsEnd /STK=2 /UG=Rn.47128 /UG_TITLE=ESTs, Highly similar to T33754 OE-1-associated zinc finger protein Roaz - rat (R.norvegicus) AW529230 zinc finger protein 423 Zfp423 94188 NM_053583 0006350 // transcription // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // inferred from direct assay /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1396860_s_at AW529230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529230 /DB_XREF=gi:7171644 /DB_XREF=UI-R-BT1-akd-e-07-0-UI.s1 /CLONE=UI-R-BT1-akd-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.47128.1 /TIER=ConsEnd /STK=2 /UG=Rn.47128 /UG_TITLE=ESTs, Highly similar to T33754 OE-1-associated zinc finger protein Roaz - rat (R.norvegicus) AW529230 zinc finger protein 423 Zfp423 94188 NM_053583 0006350 // transcription // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // inferred from direct assay /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1396861_at BE107967 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107967 /DB_XREF=gi:8500072 /DB_XREF=UI-R-CA0-awy-h-04-0-UI.s1 /CLONE=UI-R-CA0-awy-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.59706.1 /TIER=ConsEnd /STK=2 /UG=Rn.59706 /UG_TITLE=ESTs BE107967 similar to DNA segment, Chr 4, Brigham & Womens Genetics 0951 expressed RGD1566001 500527 NM_001109263 0005515 // protein binding // inferred from physical interaction 1396862_at AW530721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530721 /DB_XREF=gi:7173135 /DB_XREF=UI-R-BT1-akq-f-07-0-UI.s1 /CLONE=UI-R-BT1-akq-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.47527.1 /TIER=ConsEnd /STK=2 /UG=Rn.47527 /UG_TITLE=ESTs AW530721 1396863_at AW535061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535061 /DB_XREF=gi:7177475 /DB_XREF=UI-R-BS0-aoa-g-07-0-UI.s1 /CLONE=UI-R-BS0-aoa-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.48417.1 /TIER=ConsEnd /STK=2 /UG=Rn.48417 /UG_TITLE=ESTs AW535061 1396864_at AI501493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501493 /DB_XREF=gi:4399344 /DB_XREF=UI-R-C2p-sb-h-02-0-UI.s1 /CLONE=UI-R-C2p-sb-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.38861.1 /TIER=ConsEnd /STK=2 /UG=Rn.38861 /UG_TITLE=ESTs AI501493 1396865_at AW253045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253045 /DB_XREF=gi:6596636 /DB_XREF=UI-R-BJ0-aeq-g-04-0-UI.s1 /CLONE=UI-R-BJ0-aeq-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.44746.1 /TIER=ConsEnd /STK=2 /UG=Rn.44746 /UG_TITLE=ESTs AW253045 1396866_s_at AA850928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850928 /DB_XREF=gi:2938468 /DB_XREF=EST193696 /CLONE=ROVAO52 /FEA=EST /CNT=3 /TID=Rn.64753.1 /TIER=ConsEnd /STK=2 /UG=Rn.64753 /UG_TITLE=ESTs, Highly similar to PEROXISOME ASSEMBLY FACTOR-1 (R.norvegicus) AA850928 peroxisomal membrane protein 3 Pxmp3 29534 NM_017234 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0006699 // bile acid biosynthetic process // inferred from electronic annotation /// 0006699 // bile acid biosynthetic process // not recorded /// 0007031 // peroxisome organization // inferred from electronic annotation /// 0007031 // peroxisome organization // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0045540 // regulation of cholesterol biosynthetic process // inferred from electronic annotation /// 0045540 // regulation of cholesterol biosynthetic process // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005777 // peroxisome // inferred from direct assay /// 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from direct assay /// 0005778 // peroxisomal membrane // inferred from electronic annotation /// 0005779 // integral to peroxisomal membrane // inferred from electronic annotation /// 0005779 // integral to peroxisomal membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1396867_at AW521175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521175 /DB_XREF=gi:7163553 /DB_XREF=UI-R-BO0-agk-b-09-0-UI.s1 /CLONE=UI-R-BO0-agk-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.45123.1 /TIER=ConsEnd /STK=2 /UG=Rn.45123 /UG_TITLE=ESTs AW521175 Relaxin 3 Rln3 266997 NM_170667 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded 0001664 // G-protein-coupled receptor binding // inferred from mutant phenotype /// 0005179 // hormone activity // traceable author statement /// 0005179 // hormone activity // inferred from electronic annotation 1396868_at AI555860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555860 /DB_XREF=gi:4488223 /DB_XREF=UI-R-C2p-re-h-06-0-UI.s1 /CLONE=UI-R-C2p-re-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.27045.1 /TIER=ConsEnd /STK=2 /UG=Rn.27045 /UG_TITLE=ESTs AI555860 1396869_at BF411165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411165 /DB_XREF=gi:11399140 /DB_XREF=UI-R-BT1-bmm-g-12-0-UI.s1 /CLONE=UI-R-BT1-bmm-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.64194.1 /TIER=ConsEnd /STK=2 /UG=Rn.64194 /UG_TITLE=ESTs BF411165 Rho GTPase activating protein 17 Arhgap17 63994 NM_022244 0007015 // actin filament organization // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0017156 // calcium ion-dependent exocytosis // inferred from direct assay 0005622 // intracellular // inferred from electronic annotation /// 0005626 // insoluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation 1396870_at BF419761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419761 /DB_XREF=gi:11407750 /DB_XREF=UI-R-CA0-bpf-h-09-0-UI.s1 /CLONE=UI-R-CA0-bpf-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.61545.1 /TIER=ConsEnd /STK=2 /UG=Rn.61545 /UG_TITLE=ESTs BF419761 1396871_at AI764002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764002 /DB_XREF=gi:5209937 /DB_XREF=UI-R-Y0-acv-g-01-0-UI.s1 /CLONE=UI-R-Y0-acv-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.41310.1 /TIER=ConsEnd /STK=2 /UG=Rn.41310 /UG_TITLE=ESTs AI764002 Potassium channel, subfamily V, member 2 Kcnv2 294065 NM_001106370 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1396872_at AI555260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555260 /DB_XREF=gi:4487623 /DB_XREF=UI-R-C2p-qv-f-08-0-UI.s1 /CLONE=UI-R-C2p-qv-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.27283.1 /TIER=ConsEnd /STK=2 /UG=Rn.27283 /UG_TITLE=ESTs AI555260 1396873_at AI501537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501537 /DB_XREF=gi:4399388 /DB_XREF=UI-R-C2p-sc-c-06-0-UI.s1 /CLONE=UI-R-C2p-sc-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.35514.1 /TIER=ConsEnd /STK=2 /UG=Rn.35514 /UG_TITLE=ESTs AI501537 1396874_at AI500976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI500976 /DB_XREF=gi:4398827 /DB_XREF=UI-R-C2p-rv-e-07-0-UI.s1 /CLONE=UI-R-C2p-rv-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.26913.1 /TIER=ConsEnd /STK=2 /UG=Rn.26913 /UG_TITLE=ESTs AI500976 1396875_at AI548900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548900 /DB_XREF=gi:4466388 /DB_XREF=UI-R-C3-tp-c-08-0-UI.s1 /CLONE=UI-R-C3-tp-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.41924.1 /TIER=ConsEnd /STK=2 /UG=Rn.41924 /UG_TITLE=ESTs AI548900 1396876_at BF393522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393522 /DB_XREF=gi:11378383 /DB_XREF=UI-R-CA0-bfu-h-09-0-UI.s1 /CLONE=UI-R-CA0-bfu-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.63620.1 /TIER=ConsEnd /STK=2 /UG=Rn.63620 /UG_TITLE=ESTs BF393522 1396877_at AI715187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715187 /DB_XREF=gi:5032440 /DB_XREF=UI-R-Y0-abn-d-03-0-UI.s1 /CLONE=UI-R-Y0-abn-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.26572.1 /TIER=ConsEnd /STK=2 /UG=Rn.26572 /UG_TITLE=ESTs AI715187 1396878_at AW528235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528235 /DB_XREF=gi:7170649 /DB_XREF=UI-R-BT1-ajw-c-03-0-UI.s1 /CLONE=UI-R-BT1-ajw-c-03-0-UI /FEA=EST /CNT=3 /TID=Rn.46812.1 /TIER=ConsEnd /STK=2 /UG=Rn.46812 /UG_TITLE=ESTs AW528235 ATG5 autophagy related 5 homolog (S. cerevisiae) Atg5 365601 NM_001014250 0000045 // autophagic vacuole assembly // inferred from mutant phenotype /// 0000045 // autophagic vacuole assembly // not recorded /// 0000045 // autophagic vacuole assembly // inferred from electronic annotation /// 0001974 // blood vessel remodeling // not recorded /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0006914 // autophagy // not recorded /// 0031397 // negative regulation of protein ubiquitination // not recorded /// 0031397 // negative regulation of protein ubiquitination // inferred from electronic annotation /// 0042311 // vasodilation // not recorded /// 0042311 // vasodilation // inferred from electronic annotation /// 0042493 // response to drug // not recorded /// 0042493 // response to drug // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043687 // post-translational protein modification // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0055015 // ventricular cardiac muscle cell development // not recorded /// 0055015 // ventricular cardiac muscle cell development // inferred from electronic annotation /// 0060047 // heart contraction // not recorded /// 0060047 // heart contraction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005776 // autophagic vacuole // not recorded /// 0005776 // autophagic vacuole // inferred from electronic annotation /// 0034045 // pre-autophagosomal structure membrane // not recorded /// 0034045 // pre-autophagosomal structure membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1396879_at AI556752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556752 /DB_XREF=gi:4489115 /DB_XREF=UI-R-C2p-rl-c-09-0-UI.s1 /CLONE=UI-R-C2p-rl-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.39313.1 /TIER=ConsEnd /STK=2 /UG=Rn.39313 /UG_TITLE=ESTs AI556752 1396880_at AI548656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548656 /DB_XREF=gi:4466144 /DB_XREF=UI-R-C3-tp-b-05-0-UI.s1 /CLONE=UI-R-C3-tp-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.43991.1 /TIER=ConsEnd /STK=2 /UG=Rn.43991 /UG_TITLE=ESTs AI548656 1396881_at BE103214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103214 /DB_XREF=gi:8495278 /DB_XREF=UI-R-BT1-aqx-e-04-0-UI.s1 /CLONE=UI-R-BT1-aqx-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.49091.1 /TIER=ConsEnd /STK=2 /UG=Rn.49091 /UG_TITLE=ESTs, Highly similar to neuropilin-2 (Rattus norvegicus) (R.norvegicus) BE103214 1396882_at AW529096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529096 /DB_XREF=gi:7171475 /DB_XREF=UI-R-BT1-aka-f-08-0-UI.s1 /CLONE=UI-R-BT1-aka-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.47074.1 /TIER=ConsEnd /STK=2 /UG=Rn.47074 /UG_TITLE=ESTs AW529096 1396883_at AI548898 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548898 /DB_XREF=gi:4466386 /DB_XREF=UI-R-C3-tp-b-12-0-UI.s1 /CLONE=UI-R-C3-tp-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.43679.1 /TIER=ConsEnd /STK=2 /UG=Rn.43679 /UG_TITLE=ESTs AI548898 1396884_at BF404113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404113 /DB_XREF=gi:11392088 /DB_XREF=UI-R-CA1-biw-b-14-0-UI.s1 /CLONE=UI-R-CA1-biw-b-14-0-UI /FEA=EST /CNT=3 /TID=Rn.60226.1 /TIER=ConsEnd /STK=2 /UG=Rn.60226 /UG_TITLE=ESTs BF404113 1396885_at BF543321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543321 /DB_XREF=gi:11634428 /DB_XREF=UI-R-Y0-abe-d-04-0-UI.r1 /CLONE=UI-R-Y0-abe-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.40766.1 /TIER=ConsEnd /STK=2 /UG=Rn.40766 /UG_TITLE=ESTs, Moderately similar to T09575 smoothelin (H.sapiens) BF543321 smoothelin Smtn 289734 NM_001013049 1396886_at BF387869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387869 /DB_XREF=gi:11372693 /DB_XREF=UI-R-CA1-bbv-f-11-0-UI.s1 /CLONE=UI-R-CA1-bbv-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.57644.1 /TIER=ConsEnd /STK=2 /UG=Rn.57644 /UG_TITLE=ESTs BF387869 1396887_at AW527935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527935 /DB_XREF=gi:7170349 /DB_XREF=UI-R-BT1-akb-h-01-0-UI.s1 /CLONE=UI-R-BT1-akb-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.49115.1 /TIER=ConsEnd /STK=2 /UG=Rn.49115 /UG_TITLE=ESTs AW527935 1396888_at AW527274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527274 /DB_XREF=gi:7169688 /DB_XREF=UI-R-BO1-ajs-d-11-0-UI.s1 /CLONE=UI-R-BO1-ajs-d-11-0-UI /FEA=EST /CNT=3 /TID=Rn.46480.1 /TIER=ConsEnd /STK=2 /UG=Rn.46480 /UG_TITLE=ESTs AW527274 1396889_at BF419391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419391 /DB_XREF=gi:11407380 /DB_XREF=UI-R-CA1-bnr-b-04-0-UI.s1 /CLONE=UI-R-CA1-bnr-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.63498.1 /TIER=ConsEnd /STK=2 /UG=Rn.63498 /UG_TITLE=ESTs BF419391 1396890_at BE096662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096662 /DB_XREF=gi:8487552 /DB_XREF=UI-R-BU0-api-d-04-0-UI.s1 /CLONE=UI-R-BU0-api-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.49199.1 /TIER=ConsEnd /STK=2 /UG=Rn.49199 /UG_TITLE=ESTs BE096662 doublecortin-like kinase 2 Dclk2 310698 NM_001009691 /// NM_001195832 0006468 // protein phosphorylation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1396891_at AW533248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533248 /DB_XREF=gi:7175662 /DB_XREF=UI-R-BU0-ana-e-12-0-UI.s1 /CLONE=UI-R-BU0-ana-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.49201.1 /TIER=ConsEnd /STK=2 /UG=Rn.49201 /UG_TITLE=ESTs AW533248 1396892_at AI548369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548369 /DB_XREF=gi:4465857 /DB_XREF=UI-R-C3-td-g-06-0-UI.s1 /CLONE=UI-R-C3-td-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.43577.1 /TIER=ConsEnd /STK=2 /UG=Rn.43577 /UG_TITLE=ESTs AI548369 1396893_at AI576209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576209 /DB_XREF=gi:4560585 /DB_XREF=UI-R-Y0-ux-d-03-0-UI.s1 /CLONE=UI-R-Y0-ux-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.26593.1 /TIER=ConsEnd /STK=2 /UG=Rn.26593 /UG_TITLE=ESTs AI576209 1396894_at AW533825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533825 /DB_XREF=gi:7176239 /DB_XREF=UI-R-BU0-anc-e-12-0-UI.s1 /CLONE=UI-R-BU0-anc-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.48186.1 /TIER=ConsEnd /STK=2 /UG=Rn.48186 /UG_TITLE=ESTs AW533825 1396895_at AW533821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533821 /DB_XREF=gi:7176235 /DB_XREF=UI-R-BU0-anc-e-06-0-UI.s1 /CLONE=UI-R-BU0-anc-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.48122.1 /TIER=ConsEnd /STK=2 /UG=Rn.48122 /UG_TITLE=ESTs AW533821 ISL LIM homeobox 1 Isl1 64444 NM_017339 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0021522 // spinal cord motor neuron differentiation // not recorded /// 0021522 // spinal cord motor neuron differentiation // inferred from electronic annotation /// 0021524 // visceral motor neuron differentiation // inferred from electronic annotation /// 0021524 // visceral motor neuron differentiation // not recorded /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0021983 // pituitary gland development // not recorded /// 0030182 // neuron differentiation // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0031016 // pancreas development // inferred from electronic annotation /// 0031016 // pancreas development // not recorded /// 0031103 // axon regeneration // inferred from expression pattern /// 0031290 // retinal ganglion cell axon guidance // inferred from electronic annotation /// 0031290 // retinal ganglion cell axon guidance // not recorded /// 0032024 // positive regulation of insulin secretion // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0048762 // mesenchymal cell differentiation // inferred from electronic annotation /// 0048762 // mesenchymal cell differentiation // not recorded 0005622 // intracellular // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0044424 // intracellular part // inferred from electronic annotation /// 0044424 // intracellular part // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from mutant phenotype /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1396896_at AW524895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524895 /DB_XREF=gi:7167280 /DB_XREF=UI-R-BO0-aid-e-08-0-UI.s1 /CLONE=UI-R-BO0-aid-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.45948.1 /TIER=ConsEnd /STK=2 /UG=Rn.45948 /UG_TITLE=ESTs, Weakly similar to T46283 hypothetical protein DKFZp566D234.1 (H.sapiens) AW524895 follistatin-like 4 Fstl4 303130 NM_001107000 0005509 // calcium ion binding // inferred from electronic annotation 1396897_at AW533806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533806 /DB_XREF=gi:7176220 /DB_XREF=UI-R-BU0-anc-d-01-0-UI.s1 /CLONE=UI-R-BU0-anc-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.47042.1 /TIER=ConsEnd /STK=2 /UG=Rn.47042 /UG_TITLE=ESTs AW533806 1396898_at AI575429 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575429 /DB_XREF=gi:4559805 /DB_XREF=UI-R-Y0-vg-c-05-0-UI.s1 /CLONE=UI-R-Y0-vg-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.38908.1 /TIER=ConsEnd /STK=2 /UG=Rn.38908 /UG_TITLE=ESTs AI575429 1396899_at BE119227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119227 /DB_XREF=gi:8511332 /DB_XREF=UI-R-CA0-azz-h-12-0-UI.s1 /CLONE=UI-R-CA0-azz-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.52391.1 /TIER=ConsEnd /STK=2 /UG=Rn.52391 /UG_TITLE=ESTs BE119227 1396900_at BE106436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106436 /DB_XREF=gi:8498538 /DB_XREF=UI-R-BO1-aso-a-02-0-UI.s1 /CLONE=UI-R-BO1-aso-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.49138.1 /TIER=ConsEnd /STK=2 /UG=Rn.49138 /UG_TITLE=ESTs BE106436 1396901_at AI060274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI060274 /DB_XREF=gi:3334051 /DB_XREF=UI-R-C1-ll-g-09-0-UI.s1 /CLONE=UI-R-C1-ll-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.37672.1 /TIER=ConsEnd /STK=2 /UG=Rn.37672 /UG_TITLE=ESTs AI060274 1396902_at BF399037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399037 /DB_XREF=gi:11384036 /DB_XREF=UI-R-CA1-bja-b-23-0-UI.s1 /CLONE=UI-R-CA1-bja-b-23-0-UI /FEA=EST /CNT=3 /TID=Rn.60664.1 /TIER=ConsEnd /STK=2 /UG=Rn.60664 /UG_TITLE=ESTs BF399037 1396903_at BF553083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF553083 /DB_XREF=gi:11662813 /DB_XREF=UI-R-C2-mu-h-12-0-UI.r1 /CLONE=UI-R-C2-mu-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.32048.1 /TIER=ConsEnd /STK=2 /UG=Rn.32048 /UG_TITLE=ESTs BF553083 1396904_at BF409502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409502 /DB_XREF=gi:11397477 /DB_XREF=UI-R-CA1-blj-h-09-0-UI.s1 /CLONE=UI-R-CA1-blj-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.64387.1 /TIER=ConsEnd /STK=2 /UG=Rn.64387 /UG_TITLE=ESTs BF409502 DDB1 and CUL4 associated factor 6 Dcaf6 289181 XM_001071288 /// XM_002724885 /// XM_002728021 /// XM_213926 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0080008 // CUL4 RING ubiquitin ligase complex // not recorded 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded 1396905_at AI501578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501578 /DB_XREF=gi:4399429 /DB_XREF=UI-R-C2p-sc-g-09-0-UI.s1 /CLONE=UI-R-C2p-sc-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.35531.1 /TIER=ConsEnd /STK=2 /UG=Rn.35531 /UG_TITLE=ESTs AI501578 1396906_at BE105377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105377 /DB_XREF=gi:8497479 /DB_XREF=UI-R-BO1-asn-a-11-0-UI.s1 /CLONE=UI-R-BO1-asn-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.49098.1 /TIER=ConsEnd /STK=2 /UG=Rn.49098 /UG_TITLE=ESTs BE105377 1396907_at AW531358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531358 /DB_XREF=gi:7173772 /DB_XREF=UI-R-C4-akw-h-10-0-UI.s1 /CLONE=UI-R-C4-akw-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.47693.1 /TIER=ConsEnd /STK=2 /UG=Rn.47693 /UG_TITLE=ESTs AW531358 Zinc finger protein X-linked Zfx 367832 NM_001109017 0001541 // ovarian follicle development // not recorded /// 0007281 // germ cell development // not recorded /// 0007283 // spermatogenesis // not recorded /// 0007610 // behavior // not recorded /// 0009566 // fertilization // not recorded /// 0009790 // embryo development // not recorded /// 0009791 // post-embryonic development // not recorded /// 0016265 // death // not recorded /// 0035264 // multicellular organism growth // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048599 // oocyte development // not recorded /// 0048872 // homeostasis of number of cells // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1396908_at AI716549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716549 /DB_XREF=gi:5033802 /DB_XREF=UI-R-Y0-abi-d-06-0-UI.s1 /CLONE=UI-R-Y0-abi-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.40792.1 /TIER=ConsEnd /STK=2 /UG=Rn.40792 /UG_TITLE=ESTs AI716549 1396909_at AI072048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072048 /DB_XREF=gi:3398242 /DB_XREF=UI-R-C2-nd-h-08-0-UI.s1 /CLONE=UI-R-C2-nd-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.35441.1 /TIER=ConsEnd /STK=2 /UG=Rn.35441 /UG_TITLE=ESTs AI072048 1396910_at AW535180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535180 /DB_XREF=gi:7177594 /DB_XREF=UI-R-C4-alu-b-04-0-UI.s1 /CLONE=UI-R-C4-alu-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.47623.1 /TIER=ConsEnd /STK=2 /UG=Rn.47623 /UG_TITLE=ESTs AW535180 1396911_at AI715502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715502 /DB_XREF=gi:5032755 /DB_XREF=UI-R-Y0-abq-c-12-0-UI.s1 /CLONE=UI-R-Y0-abq-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.41314.1 /TIER=ConsEnd /STK=2 /UG=Rn.41314 /UG_TITLE=ESTs AI715502 1396912_at BE102712 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102712 /DB_XREF=gi:8494811 /DB_XREF=UI-R-BT1-aqp-c-05-0-UI.s1 /CLONE=UI-R-BT1-aqp-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.49153.1 /TIER=ConsEnd /STK=2 /UG=Rn.49153 /UG_TITLE=ESTs BE102712 mediator complex subunit 20 Med20 316209 NM_001013178 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0016592 // mediator complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation 1396913_at AW534103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534103 /DB_XREF=gi:7176517 /DB_XREF=UI-R-C4-alp-b-10-0-UI.s1 /CLONE=UI-R-C4-alp-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.48260.1 /TIER=ConsEnd /STK=2 /UG=Rn.48260 /UG_TITLE=ESTs AW534103 1396914_at BF545104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545104 /DB_XREF=gi:11636211 /DB_XREF=UI-R-C2p-qt-g-05-0-UI.r1 /CLONE=UI-R-C2p-qt-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.39016.1 /TIER=ConsEnd /STK=2 /UG=Rn.39016 /UG_TITLE=ESTs BF545104 1396915_at AW533302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533302 /DB_XREF=gi:7175716 /DB_XREF=UI-R-BU0-anf-c-07-0-UI.s1 /CLONE=UI-R-BU0-anf-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.47300.1 /TIER=ConsEnd /STK=2 /UG=Rn.47300 /UG_TITLE=ESTs, Weakly similar to IA1_HUMAN ZINC FINGER PROTEIN IA-1 (H.sapiens) AW533302 insulinoma-associated 2 Insm2 314131 XM_001079190 /// XM_234255 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1396916_at BE106066 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106066 /DB_XREF=gi:8498168 /DB_XREF=UI-R-BO1-ask-e-05-0-UI.s1 /CLONE=UI-R-BO1-ask-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.49078.1 /TIER=ConsEnd /STK=2 /UG=Rn.49078 /UG_TITLE=ESTs BE106066 1396917_at AI535209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535209 /DB_XREF=gi:4449344 /DB_XREF=UI-R-C3-ta-g-04-0-UI.s1 /CLONE=UI-R-C3-ta-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.41254.1 /TIER=ConsEnd /STK=2 /UG=Rn.41254 /UG_TITLE=ESTs AI535209 1396918_at BF405682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405682 /DB_XREF=gi:11393657 /DB_XREF=UI-R-CA1-biv-f-04-0-UI.s1 /CLONE=UI-R-CA1-biv-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.60656.1 /TIER=ConsEnd /STK=2 /UG=Rn.60656 /UG_TITLE=ESTs, Moderately similar to MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9 (M.musculus) BF405682 ubiquitin-conjugating enzyme E2I-like LOC100364359 100364359 XR_085870 1396919_at AI137384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137384 /DB_XREF=gi:3638161 /DB_XREF=UI-R-C2p-og-f-09-0-UI.s1 /CLONE=UI-R-C2p-og-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.27409.1 /TIER=ConsEnd /STK=2 /UG=Rn.27409 /UG_TITLE=ESTs AI137384 WNK lysine deficient protein kinase 1 Wnk1 116477 NM_001002823 /// NM_053794 0003084 // positive regulation of systemic arterial blood pressure // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006811 // ion transport // inferred from sequence or structural similarity /// 0007243 // intracellular protein kinase cascade // inferred from direct assay /// 0007243 // intracellular protein kinase cascade // not recorded /// 0033673 // negative regulation of kinase activity // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0050794 // regulation of cellular process // inferred from sequence or structural similarity 0005625 // soluble fraction // not recorded /// 0005626 // insoluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0042598 // vesicular fraction // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from mutant phenotype /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004860 // protein kinase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019870 // potassium channel inhibitor activity // inferred from direct assay /// 0030291 // protein serine/threonine kinase inhibitor activity // inferred from direct assay 1396920_at AW532852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532852 /DB_XREF=gi:7175266 /DB_XREF=UI-R-BU0-ams-h-11-0-UI.s1 /CLONE=UI-R-BU0-ams-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.47305.1 /TIER=ConsEnd /STK=2 /UG=Rn.47305 /UG_TITLE=ESTs, Highly similar to S45347 probable G protein-coupled receptor - rat (R.norvegicus) AW532852 G protein-coupled receptor 176 Gpr176 117257 XM_001080723 /// XM_342493 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1396921_at AI555158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555158 /DB_XREF=gi:4487521 /DB_XREF=UI-R-C2p-qt-e-01-0-UI.s1 /CLONE=UI-R-C2p-qt-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.38794.1 /TIER=ConsEnd /STK=2 /UG=Rn.38794 /UG_TITLE=ESTs AI555158 1396922_at AI454930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454930 /DB_XREF=gi:4297170 /DB_XREF=UI-R-C2p-ql-e-09-0-UI.s1 /CLONE=UI-R-C2p-ql-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.34468.1 /TIER=ConsEnd /STK=2 /UG=Rn.34468 /UG_TITLE=ESTs AI454930 1396923_at BF400678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400678 /DB_XREF=gi:11388653 /DB_XREF=UI-R-CA0-bhe-b-10-0-UI.s1 /CLONE=UI-R-CA0-bhe-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.52208.1 /TIER=ConsEnd /STK=2 /UG=Rn.52208 /UG_TITLE=ESTs BF400678 oligophrenin 1 Ophn1 312108 NM_001107848 0006897 // endocytosis // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // not recorded /// 0046847 // filopodium assembly // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0015629 // actin cytoskeleton // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0043197 // dendritic spine // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0008093 // cytoskeletal adaptor activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0035255 // ionotropic glutamate receptor binding // inferred from physical interaction 1396924_at BF399805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399805 /DB_XREF=gi:11384815 /DB_XREF=UI-R-CA0-bhy-h-06-0-UI.s2 /CLONE=UI-R-CA0-bhy-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.58211.1 /TIER=ConsEnd /STK=2 /UG=Rn.58211 /UG_TITLE=ESTs, Highly similar to 239A_HUMAN Adult brain protein 239 (239AB) (H.sapiens) BF399805 Metallophosphoesterase domain containing 1 Mpped1 362971 NM_001130569 0016787 // hydrolase activity // inferred from electronic annotation 1396925_at BF542680 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542680 /DB_XREF=gi:11633787 /DB_XREF=UI-R-C3-sm-g-01-0-UI.r1 /CLONE=UI-R-C3-sm-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.41913.1 /TIER=ConsEnd /STK=2 /UG=Rn.41913 /UG_TITLE=ESTs BF542680 1396926_at BF563155 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563155 /DB_XREF=gi:11672885 /DB_XREF=UI-R-BO1-ajf-f-06-0-UI.r1 /CLONE=UI-R-BO1-ajf-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.46366.1 /TIER=ConsEnd /STK=2 /UG=Rn.46366 /UG_TITLE=ESTs BF563155 Vac14 homolog (S. cerevisiae) Vac14 307842 NM_177930 0005768 // endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005856 // cytoskeleton // non-traceable author statement /// 0010008 // endosome membrane // inferred from electronic annotation /// 0010008 // endosome membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1396927_at AI535048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535048 /DB_XREF=gi:4449177 /DB_XREF=UI-R-C3-sn-g-06-0-UI.s1 /CLONE=UI-R-C3-sn-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.34689.1 /TIER=ConsEnd /STK=2 /UG=Rn.34689 /UG_TITLE=ESTs, Moderately similar to kappa mopc21 coding sequence (M.musculus) AI535048 1396928_at AI548614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548614 /DB_XREF=gi:4466102 /DB_XREF=UI-R-C3-te-b-09-0-UI.s1 /CLONE=UI-R-C3-te-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.34801.1 /TIER=ConsEnd /STK=2 /UG=Rn.34801 /UG_TITLE=ESTs AI548614 1396929_at AI549391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549391 /DB_XREF=gi:4466879 /DB_XREF=UI-R-C3-ua-c-02-0-UI.s1 /CLONE=UI-R-C3-ua-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.43753.1 /TIER=ConsEnd /STK=2 /UG=Rn.43753 /UG_TITLE=ESTs AI549391 1396930_x_at AI549391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549391 /DB_XREF=gi:4466879 /DB_XREF=UI-R-C3-ua-c-02-0-UI.s1 /CLONE=UI-R-C3-ua-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.43753.1 /TIER=ConsEnd /STK=2 /UG=Rn.43753 /UG_TITLE=ESTs AI549391 1396931_at AI137091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137091 /DB_XREF=gi:3637868 /DB_XREF=UI-R-C2p-oe-b-07-0-UI.s1 /CLONE=UI-R-C2p-oe-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.33606.1 /TIER=ConsEnd /STK=2 /UG=Rn.33606 /UG_TITLE=ESTs AI137091 1396932_at BF564328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564328 /DB_XREF=gi:11674058 /DB_XREF=UI-R-C4-aln-e-12-0-UI.r1 /CLONE=UI-R-C4-aln-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.48323.1 /TIER=ConsEnd /STK=2 /UG=Rn.48323 /UG_TITLE=ESTs BF564328 1396933_s_at BF545626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF545626 /DB_XREF=gi:11636733 /DB_XREF=UI-R-C2p-qn-g-04-0-UI.r1 /CLONE=UI-R-C2p-qn-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.40275.1 /TIER=ConsEnd /STK=2 /UG=Rn.40275 /UG_TITLE=ESTs BF545626 aldo-keto reductase family 1, member C14 Akr1c14 191574 NM_138547 0008152 // metabolic process // not recorded /// 0008202 // steroid metabolic process // traceable author statement /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0016229 // steroid dehydrogenase activity // inferred from mutant phenotype /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0047023 // 3(or 17)-alpha-hydroxysteroid dehydrogenase activity // inferred from electronic annotation /// 0047023 // 3(or 17)-alpha-hydroxysteroid dehydrogenase activity // not recorded /// 0047026 // 3-alpha-hydroxysteroid dehydrogenase (A-specific) activity // inferred from electronic annotation 1396934_at AI410280 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410280 /DB_XREF=gi:4253784 /DB_XREF=EST238573 /CLONE=RKIEA37 /FEA=EST /CNT=3 /TID=Rn.44067.1 /TIER=ConsEnd /STK=2 /UG=Rn.44067 /UG_TITLE=ESTs AI410280 1396935_at AI410333 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410333 /DB_XREF=gi:4253837 /DB_XREF=EST238626 /CLONE=RKIDX75 /FEA=EST /CNT=3 /TID=Rn.44165.1 /TIER=ConsEnd /STK=2 /UG=Rn.44165 /UG_TITLE=ESTs AI410333 1396936_at AW529113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529113 /DB_XREF=gi:7171527 /DB_XREF=UI-R-BO1-ajp-b-12-0-UI.s1 /CLONE=UI-R-BO1-ajp-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.47090.1 /TIER=ConsEnd /STK=2 /UG=Rn.47090 /UG_TITLE=ESTs AW529113 1396937_at AW523550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523550 /DB_XREF=gi:7165935 /DB_XREF=UI-R-BO0-ahu-d-05-0-UI.s1 /CLONE=UI-R-BO0-ahu-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.45677.1 /TIER=ConsEnd /STK=2 /UG=Rn.45677 /UG_TITLE=ESTs AW523550 1396938_at AW529349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529349 /DB_XREF=gi:7171763 /DB_XREF=UI-R-BT1-akm-h-09-0-UI.s1 /CLONE=UI-R-BT1-akm-h-09-0-UI /FEA=EST /CNT=3 /TID=Rn.47172.1 /TIER=ConsEnd /STK=2 /UG=Rn.47172 /UG_TITLE=ESTs AW529349 1396939_at AI145547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145547 /DB_XREF=gi:3667346 /DB_XREF=UI-R-BT0-py-h-06-0-UI.s1 /CLONE=UI-R-BT0-py-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.28527.1 /TIER=ConsEnd /STK=2 /UG=Rn.28527 /UG_TITLE=ESTs AI145547 1396940_at AA956161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956161 /DB_XREF=gi:4238555 /DB_XREF=UI-R-E1-fg-d-03-0-UI.s2 /CLONE=UI-R-E1-fg-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.37587.1 /TIER=ConsEnd /STK=2 /UG=Rn.37587 /UG_TITLE=ESTs AA956161 1396941_at AA997470 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997470 /DB_XREF=gi:4283826 /DB_XREF=UI-R-C0-hl-g-02-0-UI.s1 /CLONE=UI-R-C0-hl-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.35416.1 /TIER=ConsEnd /STK=2 /UG=Rn.35416 /UG_TITLE=ESTs AA997470 1396942_at AI408959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408959 /DB_XREF=gi:4252463 /DB_XREF=EST237250 /CLONE=RKIDK64 /FEA=EST /CNT=3 /TID=Rn.43615.1 /TIER=ConsEnd /STK=2 /UG=Rn.43615 /UG_TITLE=ESTs AI408959 1396943_at AI547694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547694 /DB_XREF=gi:4465182 /DB_XREF=UI-R-C3-th-c-06-0-UI.s1 /CLONE=UI-R-C3-th-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.43868.1 /TIER=ConsEnd /STK=2 /UG=Rn.43868 /UG_TITLE=ESTs AI547694 1396944_at BM391352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391352 /DB_XREF=gi:18191405 /DB_XREF=UI-R-DY0-ckq-d-22-0-UI.s1 /CLONE=UI-R-DY0-ckq-d-22-0-UI /FEA=EST /CNT=2 /TID=Rn.82620.1 /TIER=ConsEnd /STK=2 /UG=Rn.82620 /UG_TITLE=ESTs BM391352 1396945_at BF406132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406132 /DB_XREF=gi:11394107 /DB_XREF=UI-R-CA1-bjf-c-05-0-UI.s1 /CLONE=UI-R-CA1-bjf-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.60824.1 /TIER=ConsEnd /STK=2 /UG=Rn.60824 /UG_TITLE=ESTs BF406132 1396946_at BI294771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294771 /DB_XREF=gi:14957550 /DB_XREF=UI-R-DK0-ceb-h-10-0-UI.s1 /CLONE=UI-R-DK0-ceb-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.79624.1 /TIER=ConsEnd /STK=2 /UG=Rn.79624 /UG_TITLE=ESTs BI294771 1396947_at BF404382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404382 /DB_XREF=gi:11392357 /DB_XREF=UI-R-CA1-bie-e-08-0-UI.s1 /CLONE=UI-R-CA1-bie-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.57603.1 /TIER=ConsEnd /STK=2 /UG=Rn.57603 /UG_TITLE=ESTs BF404382 1396948_at BF399584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399584 /DB_XREF=gi:11384592 /DB_XREF=UI-R-CA0-bht-f-01-0-UI.s2 /CLONE=UI-R-CA0-bht-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.59420.1 /TIER=ConsEnd /STK=2 /UG=Rn.59420 /UG_TITLE=ESTs BF399584 1396949_at AA891228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA891228 /DB_XREF=gi:4132035 /DB_XREF=EST195031 /CLONE=RHEAQ78 /FEA=EST /CNT=2 /TID=Rn.37554.1 /TIER=ConsEnd /STK=2 /UG=Rn.37554 /UG_TITLE=ESTs AA891228 similar to RIKEN cDNA 2310003M01 LOC298139 298139 NM_001013930 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1396950_at BF405915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405915 /DB_XREF=gi:11393890 /DB_XREF=UI-R-CA1-bii-e-06-0-UI.s1 /CLONE=UI-R-CA1-bii-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.60594.1 /TIER=ConsEnd /STK=2 /UG=Rn.60594 /UG_TITLE=ESTs, Weakly similar to S21348 probable pol polyprotein-related protein 4 - rat (R.norvegicus) BF405915 1396951_at BI288016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288016 /DB_XREF=gi:14944206 /DB_XREF=UI-R-BT1-bni-h-04-0-UI.s2 /CLONE=UI-R-BT1-bni-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.78841.1 /TIER=ConsEnd /STK=2 /UG=Rn.78841 /UG_TITLE=ESTs BI288016 hypothetical protein LOC100362109 LOC100362109 100362109 XM_002729840 1396952_at BF404446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404446 /DB_XREF=gi:11392421 /DB_XREF=UI-R-CA1-bif-d-10-0-UI.s1 /CLONE=UI-R-CA1-bif-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.60505.1 /TIER=ConsEnd /STK=2 /UG=Rn.60505 /UG_TITLE=ESTs BF404446 1396953_at BF404609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404609 /DB_XREF=gi:11392584 /DB_XREF=UI-R-CA1-bih-e-04-0-UI.s1 /CLONE=UI-R-CA1-bih-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.59968.1 /TIER=ConsEnd /STK=2 /UG=Rn.59968 /UG_TITLE=ESTs BF404609 1396954_at BM386206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386206 /DB_XREF=gi:18186259 /DB_XREF=UI-R-CN1-cjf-a-24-0-UI.s1 /CLONE=UI-R-CN1-cjf-a-24-0-UI /FEA=EST /CNT=2 /TID=Rn.81720.1 /TIER=ConsEnd /STK=2 /UG=Rn.81720 /UG_TITLE=ESTs BM386206 1396955_at BF405025 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405025 /DB_XREF=gi:11393000 /DB_XREF=UI-R-CA1-bio-f-07-0-UI.s1 /CLONE=UI-R-CA1-bio-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.59478.1 /TIER=ConsEnd /STK=2 /UG=Rn.59478 /UG_TITLE=ESTs BF405025 1396956_at BF399606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399606 /DB_XREF=gi:11384614 /DB_XREF=UI-R-CA0-bhu-b-03-0-UI.s2 /CLONE=UI-R-CA0-bhu-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.59423.1 /TIER=ConsEnd /STK=2 /UG=Rn.59423 /UG_TITLE=ESTs, Moderately similar to S37694 gene PC326 protein - mouse (M.musculus) BF399606 1396957_at BF404490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404490 /DB_XREF=gi:11392465 /DB_XREF=UI-R-CA1-big-a-03-0-UI.s1 /CLONE=UI-R-CA1-big-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.60525.1 /TIER=ConsEnd /STK=2 /UG=Rn.60525 /UG_TITLE=ESTs BF404490 1396958_at BI289502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289502 /DB_XREF=gi:14947141 /DB_XREF=UI-R-DK0-cfh-g-11-0-UI.s1 /CLONE=UI-R-DK0-cfh-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.79046.1 /TIER=ConsEnd /STK=2 /UG=Rn.79046 /UG_TITLE=ESTs BI289502 1396959_at BM382853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM382853 /DB_XREF=gi:18182906 /DB_XREF=UI-R-BT1-bko-f-01-0-UI.s1 /CLONE=UI-R-BT1-bko-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.51048.1 /TIER=ConsEnd /STK=2 /UG=Rn.51048 /UG_TITLE=ESTs BM382853 1396960_at BF405039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405039 /DB_XREF=gi:11393014 /DB_XREF=UI-R-CA1-bio-h-03-0-UI.s1 /CLONE=UI-R-CA1-bio-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.60651.1 /TIER=ConsEnd /STK=2 /UG=Rn.60651 /UG_TITLE=ESTs, Weakly similar to Notch gene homolog 2, (Drosophila) (Rattus norvegicus) (R.norvegicus) BF405039 ankyrin repeat domain 60 Ankrd60 296417 XM_001054773 /// XM_001071433 1396961_at BF404960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404960 /DB_XREF=gi:11392935 /DB_XREF=UI-R-CA1-bij-g-05-0-UI.s1 /CLONE=UI-R-CA1-bij-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.60547.1 /TIER=ConsEnd /STK=2 /UG=Rn.60547 /UG_TITLE=ESTs BF404960 1396962_at BI296196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296196 /DB_XREF=gi:14960395 /DB_XREF=UI-R-DK0-cex-e-02-0-UI.s1 /CLONE=UI-R-DK0-cex-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.79796.1 /TIER=ConsEnd /STK=2 /UG=Rn.79796 /UG_TITLE=ESTs BI296196 1396963_at BF404522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404522 /DB_XREF=gi:11392537 /DB_XREF=UI-R-CA1-big-h-07-0-UI.s1 /CLONE=UI-R-CA1-big-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.60545.1 /TIER=ConsEnd /STK=2 /UG=Rn.60545 /UG_TITLE=ESTs BF404522 1396964_at BE109227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109227 /DB_XREF=gi:8501332 /DB_XREF=UI-R-BS1-azd-d-06-0-UI.s1 /CLONE=UI-R-BS1-azd-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.51695.1 /TIER=ConsEnd /STK=2 /UG=Rn.51695 /UG_TITLE=ESTs BE109227 1396965_at BF406350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406350 /DB_XREF=gi:11394325 /DB_XREF=UI-R-CA1-bjf-p-11-0-UI.s1 /CLONE=UI-R-CA1-bjf-p-11-0-UI /FEA=EST /CNT=2 /TID=Rn.60836.1 /TIER=ConsEnd /STK=2 /UG=Rn.60836 /UG_TITLE=ESTs BF406350 1396966_at BF404367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404367 /DB_XREF=gi:11392342 /DB_XREF=UI-R-CA1-bie-c-10-0-UI.s1 /CLONE=UI-R-CA1-bie-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.60482.1 /TIER=ConsEnd /STK=2 /UG=Rn.60482 /UG_TITLE=ESTs BF404367 1396967_at BF406294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406294 /DB_XREF=gi:11394269 /DB_XREF=UI-R-CA1-bjf-f-05-0-UI.s1 /CLONE=UI-R-CA1-bjf-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.60939.1 /TIER=ConsEnd /STK=2 /UG=Rn.60939 /UG_TITLE=ESTs BF406294 1396968_at BF404591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404591 /DB_XREF=gi:11392566 /DB_XREF=UI-R-CA1-bih-c-05-0-UI.s1 /CLONE=UI-R-CA1-bih-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.60551.1 /TIER=ConsEnd /STK=2 /UG=Rn.60551 /UG_TITLE=ESTs BF404591 1396969_at BF402366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402366 /DB_XREF=gi:11390341 /DB_XREF=UI-R-CA0-bhn-d-06-0-UI.s1 /CLONE=UI-R-CA0-bhn-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.60035.1 /TIER=ConsEnd /STK=2 /UG=Rn.60035 /UG_TITLE=ESTs BF402366 1396970_at BF404956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404956 /DB_XREF=gi:11392931 /DB_XREF=UI-R-CA1-bij-f-12-0-UI.s1 /CLONE=UI-R-CA1-bij-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.60629.1 /TIER=ConsEnd /STK=2 /UG=Rn.60629 /UG_TITLE=ESTs BF404956 1396971_at BF413140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413140 /DB_XREF=gi:11401129 /DB_XREF=UI-R-BT1-bnx-b-09-0-UI.s1 /CLONE=UI-R-BT1-bnx-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.62258.1 /TIER=ConsEnd /STK=2 /UG=Rn.62258 /UG_TITLE=ESTs BF413140 1396972_at BF399601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399601 /DB_XREF=gi:11384609 /DB_XREF=UI-R-CA0-bhu-a-05-0-UI.s2 /CLONE=UI-R-CA0-bhu-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.59422.1 /TIER=ConsEnd /STK=2 /UG=Rn.59422 /UG_TITLE=ESTs BF399601 1396973_at BF404479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404479 /DB_XREF=gi:11392454 /DB_XREF=UI-R-CA1-bif-h-01-0-UI.s1 /CLONE=UI-R-CA1-bif-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.60520.1 /TIER=ConsEnd /STK=2 /UG=Rn.60520 /UG_TITLE=ESTs BF404479 1396974_at BF406150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406150 /DB_XREF=gi:11394125 /DB_XREF=UI-R-CA1-bjf-g-05-0-UI.s1 /CLONE=UI-R-CA1-bjf-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.60817.1 /TIER=ConsEnd /STK=2 /UG=Rn.60817 /UG_TITLE=ESTs BF406150 1396975_at BI281220 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281220 /DB_XREF=gi:14930734 /DB_XREF=UI-R-CT0s-cat-g-09-0-UI.s1 /CLONE=UI-R-CT0s-cat-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.78163.1 /TIER=ConsEnd /STK=2 /UG=Rn.78163 /UG_TITLE=ESTs, Weakly similar to S12207 hypothetical protein (M.musculus) BI281220 1396976_at BF399569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399569 /DB_XREF=gi:11384577 /DB_XREF=UI-R-CA0-bht-a-04-0-UI.s2 /CLONE=UI-R-CA0-bht-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.59416.1 /TIER=ConsEnd /STK=2 /UG=Rn.59416 /UG_TITLE=ESTs BF399569 1396977_at BE110632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110632 /DB_XREF=gi:8502737 /DB_XREF=UI-R-BJ1-avu-c-02-0-UI.s1 /CLONE=UI-R-BJ1-avu-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.49967.1 /TIER=ConsEnd /STK=2 /UG=Rn.49967 /UG_TITLE=ESTs BE110632 1396978_at BF404424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404424 /DB_XREF=gi:11392399 /DB_XREF=UI-R-CA1-bif-b-06-0-UI.s1 /CLONE=UI-R-CA1-bif-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.60497.1 /TIER=ConsEnd /STK=2 /UG=Rn.60497 /UG_TITLE=ESTs BF404424 1396979_at BF404542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404542 /DB_XREF=gi:11392482 /DB_XREF=UI-R-CA1-big-c-04-0-UI.s1 /CLONE=UI-R-CA1-big-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.60531.1 /TIER=ConsEnd /STK=2 /UG=Rn.60531 /UG_TITLE=ESTs BF404542 similar to RIKEN cDNA 4930555I21 MGC114440 500566 NM_001025772 1396980_at BF404929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404929 /DB_XREF=gi:11392904 /DB_XREF=UI-R-CA1-bij-d-08-0-UI.s1 /CLONE=UI-R-CA1-bij-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.60388.1 /TIER=ConsEnd /STK=2 /UG=Rn.60388 /UG_TITLE=ESTs BF404929 1396981_at BM390744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390744 /DB_XREF=gi:18190797 /DB_XREF=UI-R-CN1-cjr-j-09-0-UI.s1 /CLONE=UI-R-CN1-cjr-j-09-0-UI /FEA=EST /CNT=2 /TID=Rn.81594.1 /TIER=ConsEnd /STK=2 /UG=Rn.81594 /UG_TITLE=ESTs BM390744 Pannexin 1 Panx1 315435 NM_199397 0006812 // cation transport // inferred from electronic annotation /// 0006812 // cation transport // not recorded /// 0007267 // cell-cell signaling // inferred from mutant phenotype /// 0033198 // response to ATP // inferred from electronic annotation /// 0033198 // response to ATP // not recorded /// 0050715 // positive regulation of cytokine secretion // inferred from electronic annotation /// 0050715 // positive regulation of cytokine secretion // not recorded /// 0050717 // positive regulation of interleukin-1 alpha secretion // inferred from electronic annotation /// 0050717 // positive regulation of interleukin-1 alpha secretion // not recorded /// 0050718 // positive regulation of interleukin-1 beta secretion // inferred from electronic annotation /// 0050718 // positive regulation of interleukin-1 beta secretion // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005921 // gap junction // inferred from mutant phenotype /// 0005921 // gap junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0032059 // bleb // inferred from electronic annotation /// 0032059 // bleb // not recorded 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005243 // gap junction channel activity // inferred from mutant phenotype /// 0046982 // protein heterodimerization activity // inferred from mutant phenotype 1396982_at AI410832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410832 /DB_XREF=gi:4254336 /DB_XREF=EST239125 /CLONE=RHECZ70 /FEA=EST /CNT=2 /TID=Rn.43630.1 /TIER=ConsEnd /STK=2 /UG=Rn.43630 /UG_TITLE=ESTs AI410832 Zinc finger and SCAN domain containing 20 Zscan20 500549 XM_001059988 /// XM_575911 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1396983_at BF405930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405930 /DB_XREF=gi:11393905 /DB_XREF=UI-R-CA1-bii-f-11-0-UI.s1 /CLONE=UI-R-CA1-bii-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.59999.1 /TIER=ConsEnd /STK=2 /UG=Rn.59999 /UG_TITLE=ESTs BF405930 1396984_at BM390248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390248 /DB_XREF=gi:18190301 /DB_XREF=UI-R-CN1-cjq-k-21-0-UI.s1 /CLONE=UI-R-CN1-cjq-k-21-0-UI /FEA=EST /CNT=2 /TID=Rn.82410.1 /TIER=ConsEnd /STK=2 /UG=Rn.82410 /UG_TITLE=ESTs BM390248 1396985_at BE107425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107425 /DB_XREF=gi:8499530 /DB_XREF=UI-R-BS1-ayt-e-10-0-UI.s1 /CLONE=UI-R-BS1-ayt-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.52877.1 /TIER=ConsEnd /STK=2 /UG=Rn.52877 /UG_TITLE=ESTs BE107425 1396986_at BF405878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405878 /DB_XREF=gi:11393853 /DB_XREF=UI-R-CA1-bii-b-01-0-UI.s1 /CLONE=UI-R-CA1-bii-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.60612.1 /TIER=ConsEnd /STK=2 /UG=Rn.60612 /UG_TITLE=ESTs BF405878 1396987_at BF406303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406303 /DB_XREF=gi:11394278 /DB_XREF=UI-R-CA1-bjf-f-23-0-UI.s1 /CLONE=UI-R-CA1-bjf-f-23-0-UI /FEA=EST /CNT=2 /TID=Rn.60880.1 /TIER=ConsEnd /STK=2 /UG=Rn.60880 /UG_TITLE=ESTs BF406303 1396988_at BF396476 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396476 /DB_XREF=gi:11381450 /DB_XREF=UI-R-BS2-bdy-f-02-0-UI.s1 /CLONE=UI-R-BS2-bdy-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.58487.1 /TIER=ConsEnd /STK=2 /UG=Rn.58487 /UG_TITLE=ESTs BF396476 1396989_at BF402350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402350 /DB_XREF=gi:11390325 /DB_XREF=UI-R-CA0-bhn-b-12-0-UI.s1 /CLONE=UI-R-CA0-bhn-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.59650.1 /TIER=ConsEnd /STK=2 /UG=Rn.59650 /UG_TITLE=ESTs BF402350 1396990_at BF396608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396608 /DB_XREF=gi:11381583 /DB_XREF=UI-R-BS2-bea-b-02-0-UI.s1 /CLONE=UI-R-BS2-bea-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.58642.1 /TIER=ConsEnd /STK=2 /UG=Rn.58642 /UG_TITLE=ESTs BF396608 1396991_at BF402387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402387 /DB_XREF=gi:11390362 /DB_XREF=UI-R-CA0-bhn-f-06-0-UI.s1 /CLONE=UI-R-CA0-bhn-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.59873.1 /TIER=ConsEnd /STK=2 /UG=Rn.59873 /UG_TITLE=ESTs BF402387 1396992_at BF400795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400795 /DB_XREF=gi:11388810 /DB_XREF=UI-R-CA0-bhg-c-08-0-UI.s1 /CLONE=UI-R-CA0-bhg-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.59654.1 /TIER=ConsEnd /STK=2 /UG=Rn.59654 /UG_TITLE=ESTs BF400795 1396993_at BM390929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390929 /DB_XREF=gi:18190982 /DB_XREF=UI-R-CN1-cjp-o-05-0-UI.s1 /CLONE=UI-R-CN1-cjp-o-05-0-UI /FEA=EST /CNT=2 /TID=Rn.82563.1 /TIER=ConsEnd /STK=2 /UG=Rn.82563 /UG_TITLE=ESTs BM390929 1396994_at BM382872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM382872 /DB_XREF=gi:18182925 /DB_XREF=UI-R-BT1-bko-g-11-0-UI.s1 /CLONE=UI-R-BT1-bko-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.81271.1 /TIER=ConsEnd /STK=2 /UG=Rn.81271 /UG_TITLE=ESTs, Weakly similar to C42D8.3.p (Caenorhabditis elegans) (C.elegans) BM382872 pantothenate kinase 2 (Hallervorden-Spatz syndrome) Pank2 296167 NM_001106513 0015937 // coenzyme A biosynthetic process // inferred from electronic annotation 0004594 // pantothenate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1396995_at BG376821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376821 /DB_XREF=gi:13301293 /DB_XREF=UI-R-CA1-blh-e-07-0-UI.s1 /CLONE=UI-R-CA1-blh-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.66429.1 /TIER=ConsEnd /STK=2 /UG=Rn.66429 /UG_TITLE=ESTs BG376821 1396996_at BF409811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409811 /DB_XREF=gi:11397786 /DB_XREF=UI-R-CA1-bjr-a-10-0-UI.s1 /CLONE=UI-R-CA1-bjr-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.61489.1 /TIER=ConsEnd /STK=2 /UG=Rn.61489 /UG_TITLE=ESTs, Highly similar to UBP1_HUMAN UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 (UBIQUITIN THIOLESTERASE 1) (UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1) (DEUBIQUITINATING ENZYME 1) (HUBP) (H.sapiens) BF409811 1396997_at BF399577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399577 /DB_XREF=gi:11384585 /DB_XREF=UI-R-CA0-bht-d-06-0-UI.s2 /CLONE=UI-R-CA0-bht-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.62379.1 /TIER=ConsEnd /STK=2 /UG=Rn.62379 /UG_TITLE=ESTs BF399577 1396998_at BI296374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296374 /DB_XREF=gi:14960736 /DB_XREF=UI-R-DK0-cez-f-05-0-UI.s1 /CLONE=UI-R-DK0-cez-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.79050.1 /TIER=ConsEnd /STK=2 /UG=Rn.79050 /UG_TITLE=ESTs BI296374 1396999_at BF400843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400843 /DB_XREF=gi:11388783 /DB_XREF=UI-R-CA0-bhf-h-03-0-UI.s1 /CLONE=UI-R-CA0-bhf-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.59648.1 /TIER=ConsEnd /STK=2 /UG=Rn.59648 /UG_TITLE=ESTs BF400843 1397000_at BF419803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419803 /DB_XREF=gi:11407792 /DB_XREF=UI-R-CA0-bpg-d-08-0-UI.s1 /CLONE=UI-R-CA0-bpg-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.62669.1 /TIER=ConsEnd /STK=2 /UG=Rn.62669 /UG_TITLE=ESTs BF419803 Similar to TBC1 domain family, member 8 LOC680133 680133 NM_001191067 /// XM_001055799 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1397001_at BF406166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406166 /DB_XREF=gi:11394141 /DB_XREF=UI-R-CA1-bjf-k-05-0-UI.s1 /CLONE=UI-R-CA1-bjf-k-05-0-UI /FEA=EST /CNT=2 /TID=Rn.60739.1 /TIER=ConsEnd /STK=2 /UG=Rn.60739 /UG_TITLE=ESTs BF406166 1397002_at BF404354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404354 /DB_XREF=gi:11392329 /DB_XREF=UI-R-CA1-bie-b-05-0-UI.s1 /CLONE=UI-R-CA1-bie-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.59970.1 /TIER=ConsEnd /STK=2 /UG=Rn.59970 /UG_TITLE=ESTs BF404354 1397003_at BF399521 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399521 /DB_XREF=gi:11384529 /DB_XREF=UI-R-CA1-bjb-h-20-0-UI.s1 /CLONE=UI-R-CA1-bjb-h-20-0-UI /FEA=EST /CNT=2 /TID=Rn.57572.1 /TIER=ConsEnd /STK=2 /UG=Rn.57572 /UG_TITLE=ESTs BF399521 1397004_at BF394158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394158 /DB_XREF=gi:11379022 /DB_XREF=UI-R-CA0-bha-f-01-0-UI.s1 /CLONE=UI-R-CA0-bha-f-01-0-UI /FEA=EST /CNT=2 /TID=Rn.58229.1 /TIER=ConsEnd /STK=2 /UG=Rn.58229 /UG_TITLE=ESTs BF394158 1397005_at BF393900 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393900 /DB_XREF=gi:11378763 /DB_XREF=UI-R-CA0-bgw-d-02-0-UI.s1 /CLONE=UI-R-CA0-bgw-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.58160.1 /TIER=ConsEnd /STK=2 /UG=Rn.58160 /UG_TITLE=ESTs BF393900 1397006_at BF401586 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401586 /DB_XREF=gi:11389561 /DB_XREF=UI-R-CA0-bgm-d-03-0-UI.s1 /CLONE=UI-R-CA0-bgm-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.59834.1 /TIER=ConsEnd /STK=2 /UG=Rn.59834 /UG_TITLE=ESTs BF401586 1397007_at BI278529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278529 /DB_XREF=gi:14925464 /DB_XREF=UI-R-CZ0-byh-g-10-0-UI.s1 /CLONE=UI-R-CZ0-byh-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.77748.1 /TIER=ConsEnd /STK=2 /UG=Rn.77748 /UG_TITLE=ESTs BI278529 1397008_at BF404563 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404563 /DB_XREF=gi:11392503 /DB_XREF=UI-R-CA1-big-e-04-0-UI.s1 /CLONE=UI-R-CA1-big-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.57380.1 /TIER=ConsEnd /STK=2 /UG=Rn.57380 /UG_TITLE=ESTs BF404563 1397009_at BF396142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396142 /DB_XREF=gi:11381114 /DB_XREF=UI-R-CA1-bcb-g-08-0-UI.s1 /CLONE=UI-R-CA1-bcb-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.58540.1 /TIER=ConsEnd /STK=2 /UG=Rn.58540 /UG_TITLE=ESTs BF396142 1397010_at BE109584 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109584 /DB_XREF=gi:8501689 /DB_XREF=UI-R-BJ1-avp-g-12-0-UI.s1 /CLONE=UI-R-BJ1-avp-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.52452.1 /TIER=ConsEnd /STK=2 /UG=Rn.52452 /UG_TITLE=ESTs BE109584 1397011_at BE108912 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108912 /DB_XREF=gi:8501017 /DB_XREF=UI-R-BS1-ayz-g-12-0-UI.s1 /CLONE=UI-R-BS1-ayz-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.51639.1 /TIER=ConsEnd /STK=2 /UG=Rn.51639 /UG_TITLE=ESTs BE108912 1397012_at AI411908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411908 /DB_XREF=gi:4255412 /DB_XREF=EST240202 /CLONE=RKIER07 /FEA=EST /CNT=2 /TID=Rn.43643.1 /TIER=ConsEnd /STK=2 /UG=Rn.43643 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) AI411908 1397013_at BF409867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409867 /DB_XREF=gi:11397842 /DB_XREF=UI-R-CA1-bjr-g-03-0-UI.s1 /CLONE=UI-R-CA1-bjr-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.61510.1 /TIER=ConsEnd /STK=2 /UG=Rn.61510 /UG_TITLE=ESTs BF409867 1397014_at BF419776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419776 /DB_XREF=gi:11407765 /DB_XREF=UI-R-CA0-bpg-b-03-0-UI.s1 /CLONE=UI-R-CA0-bpg-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.63641.1 /TIER=ConsEnd /STK=2 /UG=Rn.63641 /UG_TITLE=ESTs BF419776 1397015_at BF386238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386238 /DB_XREF=gi:11371062 /DB_XREF=UI-R-CA1-bbc-c-03-0-UI.s1 /CLONE=UI-R-CA1-bbc-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.56219.1 /TIER=ConsEnd /STK=2 /UG=Rn.56219 /UG_TITLE=ESTs BF386238 ets variant 1 Etv1 362733 NM_001108709 /// NM_001163156 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007517 // muscle organ development // not recorded /// 0007638 // mechanosensory behavior // not recorded /// 0045941 // positive regulation of transcription // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1397016_at BF393983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393983 /DB_XREF=gi:11378812 /DB_XREF=UI-R-CA0-bgx-a-03-0-UI.s1 /CLONE=UI-R-CA0-bgx-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.58180.1 /TIER=ConsEnd /STK=2 /UG=Rn.58180 /UG_TITLE=ESTs BF393983 1397017_at BF400853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400853 /DB_XREF=gi:11388793 /DB_XREF=UI-R-CA0-bhg-a-04-0-UI.s1 /CLONE=UI-R-CA0-bhg-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.59651.1 /TIER=ConsEnd /STK=2 /UG=Rn.59651 /UG_TITLE=ESTs BF400853 1397018_at BF399590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399590 /DB_XREF=gi:11384598 /DB_XREF=UI-R-CA0-bht-g-07-0-UI.s2 /CLONE=UI-R-CA0-bht-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.59421.1 /TIER=ConsEnd /STK=2 /UG=Rn.59421 /UG_TITLE=ESTs BF399590 1397019_at BF400760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400760 /DB_XREF=gi:11388735 /DB_XREF=UI-R-CA0-bhf-c-07-0-UI.s1 /CLONE=UI-R-CA0-bhf-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.59637.1 /TIER=ConsEnd /STK=2 /UG=Rn.59637 /UG_TITLE=ESTs BF400760 1397020_at BF394251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394251 /DB_XREF=gi:11379115 /DB_XREF=UI-R-CA0-bhc-f-02-0-UI.s1 /CLONE=UI-R-CA0-bhc-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.58253.1 /TIER=ConsEnd /STK=2 /UG=Rn.58253 /UG_TITLE=ESTs BF394251 1397021_at BF404503 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404503 /DB_XREF=gi:11392518 /DB_XREF=UI-R-CA1-big-f-11-0-UI.s1 /CLONE=UI-R-CA1-big-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.60540.1 /TIER=ConsEnd /STK=2 /UG=Rn.60540 /UG_TITLE=ESTs BF404503 1397022_at BF413347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413347 /DB_XREF=gi:11401336 /DB_XREF=UI-R-CA0-boe-a-05-0-UI.s1 /CLONE=UI-R-CA0-boe-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.62313.1 /TIER=ConsEnd /STK=2 /UG=Rn.62313 /UG_TITLE=ESTs BF413347 1397023_at BF414016 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414016 /DB_XREF=gi:11402005 /DB_XREF=UI-R-BJ2-bol-d-10-0-UI.s1 /CLONE=UI-R-BJ2-bol-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.62501.1 /TIER=ConsEnd /STK=2 /UG=Rn.62501 /UG_TITLE=ESTs BF414016 1397024_at BE111841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111841 /DB_XREF=gi:8503946 /DB_XREF=UI-R-BJ1-avz-d-04-0-UI.s1 /CLONE=UI-R-BJ1-avz-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.52023.1 /TIER=ConsEnd /STK=2 /UG=Rn.52023 /UG_TITLE=ESTs BE111841 1397025_at BF400595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400595 /DB_XREF=gi:11388570 /DB_XREF=UI-R-CA0-bhd-c-04-0-UI.s1 /CLONE=UI-R-CA0-bhd-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.59592.1 /TIER=ConsEnd /STK=2 /UG=Rn.59592 /UG_TITLE=ESTs BF400595 1397026_at BF393981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393981 /DB_XREF=gi:11378810 /DB_XREF=UI-R-CA0-bgx-a-01-0-UI.s1 /CLONE=UI-R-CA0-bgx-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.58178.1 /TIER=ConsEnd /STK=2 /UG=Rn.58178 /UG_TITLE=ESTs BF393981 1397027_at BF396069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396069 /DB_XREF=gi:11381041 /DB_XREF=UI-R-CA1-bcb-a-03-0-UI.s1 /CLONE=UI-R-CA1-bcb-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.58511.1 /TIER=ConsEnd /STK=2 /UG=Rn.58511 /UG_TITLE=ESTs BF396069 1397028_at BF389733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389733 /DB_XREF=gi:11374568 /DB_XREF=UI-R-BS2-bdo-b-06-0-UI.s1 /CLONE=UI-R-BS2-bdo-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.56999.1 /TIER=ConsEnd /STK=2 /UG=Rn.56999 /UG_TITLE=ESTs BF389733 1397029_at BF399100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399100 /DB_XREF=gi:11384104 /DB_XREF=UI-R-CA1-bja-b-20-0-UI.s1 /CLONE=UI-R-CA1-bja-b-20-0-UI /FEA=EST /CNT=2 /TID=Rn.59263.1 /TIER=ConsEnd /STK=2 /UG=Rn.59263 /UG_TITLE=ESTs BF399100 1397030_at AI406451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406451 /DB_XREF=gi:4249955 /DB_XREF=EST234737 /CLONE=RBRDU87 /FEA=EST /CNT=2 /TID=Rn.43776.1 /TIER=ConsEnd /STK=2 /UG=Rn.43776 /UG_TITLE=ESTs AI406451 1397031_at BE120561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120561 /DB_XREF=gi:8512666 /DB_XREF=UI-R-CA0-bat-h-09-0-UI.s1 /CLONE=UI-R-CA0-bat-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.53599.1 /TIER=ConsEnd /STK=2 /UG=Rn.53599 /UG_TITLE=ESTs BE120561 1397032_at BF404482 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404482 /DB_XREF=gi:11392457 /DB_XREF=UI-R-CA1-bif-h-05-0-UI.s1 /CLONE=UI-R-CA1-bif-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.60521.1 /TIER=ConsEnd /STK=2 /UG=Rn.60521 /UG_TITLE=ESTs BF404482 1397033_at BI295617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295617 /DB_XREF=gi:14959245 /DB_XREF=UI-R-DK0-cek.1-e-05-0-UI.s2 /CLONE=UI-R-DK0-cek.1-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.79727.1 /TIER=ConsEnd /STK=2 /UG=Rn.79727 /UG_TITLE=ESTs BI295617 cyclin-dependent kinase 2-interacting protein Cinp 299334 NM_001106758 0016301 // kinase activity // inferred from electronic annotation 1397034_at BE121170 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121170 /DB_XREF=gi:8513275 /DB_XREF=UI-R-CA0-bau-h-02-0-UI.s1 /CLONE=UI-R-CA0-bau-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.53341.1 /TIER=ConsEnd /STK=2 /UG=Rn.53341 /UG_TITLE=ESTs BE121170 1397035_at BF399552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399552 /DB_XREF=gi:11384560 /DB_XREF=UI-R-CA1-bjb-n-22-0-UI.s1 /CLONE=UI-R-CA1-bjb-n-22-0-UI /FEA=EST /CNT=2 /TID=Rn.59408.1 /TIER=ConsEnd /STK=2 /UG=Rn.59408 /UG_TITLE=ESTs BF399552 1397036_at BF400665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400665 /DB_XREF=gi:11388640 /DB_XREF=UI-R-CA0-bhe-a-09-0-UI.s1 /CLONE=UI-R-CA0-bhe-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.59614.1 /TIER=ConsEnd /STK=2 /UG=Rn.59614 /UG_TITLE=ESTs BF400665 1397037_at BE111735 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111735 /DB_XREF=gi:8503840 /DB_XREF=UI-R-BJ1-avx-b-12-0-UI.s1 /CLONE=UI-R-BJ1-avx-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.51990.2 /TIER=ConsEnd /STK=2 /UG=Rn.51990 /UG_TITLE=ESTs, Weakly similar to open reading frame 31; G5b protein (Mus musculus) (M.musculus) BE111735 similar to hypothetical protein RGD1564195 361651 XM_001078254 /// XM_341931 0009607 // response to biotic stimulus // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 1397038_at BF394024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394024 /DB_XREF=gi:11378888 /DB_XREF=UI-R-CA0-bgy-a-05-0-UI.s1 /CLONE=UI-R-CA0-bgy-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.58187.1 /TIER=ConsEnd /STK=2 /UG=Rn.58187 /UG_TITLE=ESTs, Weakly similar to cuticular collagen (Caenorhabditis elegans) (C.elegans) BF394024 1397039_at BF400627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400627 /DB_XREF=gi:11388602 /DB_XREF=UI-R-CA0-bhd-f-04-0-UI.s1 /CLONE=UI-R-CA0-bhd-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.59599.1 /TIER=ConsEnd /STK=2 /UG=Rn.59599 /UG_TITLE=ESTs BF400627 1397040_at BF402347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402347 /DB_XREF=gi:11390322 /DB_XREF=UI-R-CA0-bhn-b-09-0-UI.s1 /CLONE=UI-R-CA0-bhn-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.59686.1 /TIER=ConsEnd /STK=2 /UG=Rn.59686 /UG_TITLE=ESTs BF402347 1397041_at BF404629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404629 /DB_XREF=gi:11392604 /DB_XREF=UI-R-CA1-bih-g-07-0-UI.s1 /CLONE=UI-R-CA1-bih-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.57280.1 /TIER=ConsEnd /STK=2 /UG=Rn.57280 /UG_TITLE=ESTs BF404629 1397042_at BE115761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115761 /DB_XREF=gi:8507866 /DB_XREF=UI-R-CA0-axs-e-11-0-UI.s1 /CLONE=UI-R-CA0-axs-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.57721.1 /TIER=ConsEnd /STK=2 /UG=Rn.57721 /UG_TITLE=ESTs BE115761 1397043_at BF404441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404441 /DB_XREF=gi:11392416 /DB_XREF=UI-R-CA1-bif-d-03-0-UI.s1 /CLONE=UI-R-CA1-bif-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.60503.1 /TIER=ConsEnd /STK=2 /UG=Rn.60503 /UG_TITLE=ESTs BF404441 1397044_at BF387373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387373 /DB_XREF=gi:11372197 /DB_XREF=UI-R-CA1-bbr-f-09-0-UI.s1 /CLONE=UI-R-CA1-bbr-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.61301.1 /TIER=ConsEnd /STK=2 /UG=Rn.61301 /UG_TITLE=ESTs BF387373 1397045_at BF416297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416297 /DB_XREF=gi:11404286 /DB_XREF=UI-R-CA0-bkr-g-09-0-UI.s1 /CLONE=UI-R-CA0-bkr-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.62979.1 /TIER=ConsEnd /STK=2 /UG=Rn.62979 /UG_TITLE=ESTs BF416297 1397046_at BE120364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120364 /DB_XREF=gi:8512469 /DB_XREF=UI-R-CA0-baq-e-10-0-UI.s1 /CLONE=UI-R-CA0-baq-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.53174.1 /TIER=ConsEnd /STK=2 /UG=Rn.53174 /UG_TITLE=ESTs BE120364 1397047_at BI288855 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288855 /DB_XREF=gi:14945841 /DB_XREF=UI-R-DK0-cdf-f-09-0-UI.s1 /CLONE=UI-R-DK0-cdf-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.78953.1 /TIER=ConsEnd /STK=2 /UG=Rn.78953 /UG_TITLE=ESTs BI288855 1397048_at BI295581 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295581 /DB_XREF=gi:14959172 /DB_XREF=UI-R-DK0-cek.1-a-12-0-UI.s2 /CLONE=UI-R-DK0-cek.1-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.79721.1 /TIER=ConsEnd /STK=2 /UG=Rn.79721 /UG_TITLE=ESTs BI295581 1397049_at BF403412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403412 /DB_XREF=gi:11391349 /DB_XREF=UI-R-CA1-biy-o-02-0-UI.s1 /CLONE=UI-R-CA1-biy-o-02-0-UI /FEA=EST /CNT=2 /TID=Rn.60265.1 /TIER=ConsEnd /STK=2 /UG=Rn.60265 /UG_TITLE=ESTs BF403412 1397050_at BE102830 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102830 /DB_XREF=gi:8494929 /DB_XREF=UI-R-BT1-aqt-g-08-0-UI.s1 /CLONE=UI-R-BT1-aqt-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.50229.1 /TIER=ConsEnd /STK=2 /UG=Rn.50229 /UG_TITLE=ESTs BE102830 copine VIII Cpne8 362988 NM_001108750 1397051_at BF392817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392817 /DB_XREF=gi:11377676 /DB_XREF=UI-R-CA0-bfo-f-04-0-UI.s1 /CLONE=UI-R-CA0-bfo-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.57749.1 /TIER=ConsEnd /STK=2 /UG=Rn.57749 /UG_TITLE=ESTs BF392817 1397052_at BF408911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408911 /DB_XREF=gi:11396886 /DB_XREF=UI-R-BS2-bet-g-12-0-UI.s1 /CLONE=UI-R-BS2-bet-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.61207.1 /TIER=ConsEnd /STK=2 /UG=Rn.61207 /UG_TITLE=ESTs, Highly similar to T42727 proliferation potential-related protein - mouse (M.musculus) BF408911 retinoblastoma binding protein 6 Rbbp6 308968 XM_001073098 /// XM_001076339 /// XM_001076360 /// XM_219296 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1397053_at AW526050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526050 /DB_XREF=gi:7168435 /DB_XREF=UI-R-BO1-aiy-f-10-0-UI.s1 /CLONE=UI-R-BO1-aiy-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.46033.1 /TIER=ConsEnd /STK=2 /UG=Rn.46033 /UG_TITLE=ESTs AW526050 1397054_at BF563234 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563234 /DB_XREF=gi:11672964 /DB_XREF=UI-R-BO1-ajh-d-07-0-UI.r1 /CLONE=UI-R-BO1-ajh-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.64136.1 /TIER=ConsEnd /STK=2 /UG=Rn.64136 /UG_TITLE=ESTs BF563234 1397055_at BF418021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418021 /DB_XREF=gi:11405970 /DB_XREF=UI-R-CA1-blv-a-05-0-UI.s1 /CLONE=UI-R-CA1-blv-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.63311.1 /TIER=ConsEnd /STK=2 /UG=Rn.63311 /UG_TITLE=ESTs BF418021 1397056_at BF390771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390771 /DB_XREF=gi:11375618 /DB_XREF=UI-R-CA1-bcp-c-07-0-UI.s1 /CLONE=UI-R-CA1-bcp-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.61599.1 /TIER=ConsEnd /STK=2 /UG=Rn.61599 /UG_TITLE=ESTs BF390771 1397057_at BF399379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399379 /DB_XREF=gi:11384383 /DB_XREF=UI-R-CA1-bjb-m-10-0-UI.s1 /CLONE=UI-R-CA1-bjb-m-10-0-UI /FEA=EST /CNT=2 /TID=Rn.59359.1 /TIER=ConsEnd /STK=2 /UG=Rn.59359 /UG_TITLE=ESTs BF399379 1397058_at BF405608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405608 /DB_XREF=gi:11393583 /DB_XREF=UI-R-CA1-bix-k-14-0-UI.s1 /CLONE=UI-R-CA1-bix-k-14-0-UI /FEA=EST /CNT=2 /TID=Rn.60714.1 /TIER=ConsEnd /STK=2 /UG=Rn.60714 /UG_TITLE=ESTs BF405608 1397059_x_at BI284873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284873 /DB_XREF=gi:14937949 /DB_XREF=UI-R-CX0s-cct-c-07-0-UI.s1 /CLONE=UI-R-CX0s-cct-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.78526.1 /TIER=ConsEnd /STK=2 /UG=Rn.78526 /UG_TITLE=ESTs, Moderately similar to PLACENTAL PROLACTIN-LIKE PROTEIN C PRECURSOR (R.norvegicus) BI284873 prolactin family 8, subfamily a, member 5 Prl8a5 286889 NM_173110 0007565 // female pregnancy // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation 1397060_at BF563411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563411 /DB_XREF=gi:11673141 /DB_XREF=UI-R-BT1-akh-d-05-0-UI.r1 /CLONE=UI-R-BT1-akh-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.46760.1 /TIER=ConsEnd /STK=2 /UG=Rn.46760 /UG_TITLE=ESTs BF563411 1397061_at BF394045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394045 /DB_XREF=gi:11378909 /DB_XREF=UI-R-CA0-bgy-c-08-0-UI.s1 /CLONE=UI-R-CA0-bgy-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.58205.1 /TIER=ConsEnd /STK=2 /UG=Rn.58205 /UG_TITLE=ESTs BF394045 1397062_at BF404845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404845 /DB_XREF=gi:11392820 /DB_XREF=UI-R-CA1-bic-d-05-0-UI.s1 /CLONE=UI-R-CA1-bic-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.59923.1 /TIER=ConsEnd /STK=2 /UG=Rn.59923 /UG_TITLE=ESTs BF404845 1397063_at BF412415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412415 /DB_XREF=gi:11400404 /DB_XREF=UI-R-BT1-bna-h-08-0-UI.s1 /CLONE=UI-R-BT1-bna-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.62079.1 /TIER=ConsEnd /STK=2 /UG=Rn.62079 /UG_TITLE=ESTs BF412415 1397064_at BE114456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114456 /DB_XREF=gi:8506561 /DB_XREF=UI-R-CA0-axm-d-09-0-UI.s1 /CLONE=UI-R-CA0-axm-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.52377.1 /TIER=ConsEnd /STK=2 /UG=Rn.52377 /UG_TITLE=ESTs BE114456 1397065_at BF399120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399120 /DB_XREF=gi:11384124 /DB_XREF=UI-R-CA1-bja-j-12-0-UI.s1 /CLONE=UI-R-CA1-bja-j-12-0-UI /FEA=EST /CNT=2 /TID=Rn.59272.1 /TIER=ConsEnd /STK=2 /UG=Rn.59272 /UG_TITLE=ESTs BF399120 1397066_at BF567364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567364 /DB_XREF=gi:11677094 /DB_XREF=UI-R-BO0-aha-d-11-0-UI.r1 /CLONE=UI-R-BO0-aha-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.45416.1 /TIER=ConsEnd /STK=2 /UG=Rn.45416 /UG_TITLE=ESTs BF567364 1397067_at BF403822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403822 /DB_XREF=gi:11391797 /DB_XREF=UI-R-CA1-bix-f-03-0-UI.s1 /CLONE=UI-R-CA1-bix-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.59164.1 /TIER=ConsEnd /STK=2 /UG=Rn.59164 /UG_TITLE=ESTs BF403822 1397068_at BF402399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402399 /DB_XREF=gi:11390374 /DB_XREF=UI-R-CA0-bhn-g-07-0-UI.s1 /CLONE=UI-R-CA0-bhn-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.59867.1 /TIER=ConsEnd /STK=2 /UG=Rn.59867 /UG_TITLE=ESTs BF402399 1397069_at BE117298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117298 /DB_XREF=gi:8509403 /DB_XREF=UI-R-BS1-ayn-b-07-0-UI.s1 /CLONE=UI-R-BS1-ayn-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.52817.1 /TIER=ConsEnd /STK=2 /UG=Rn.52817 /UG_TITLE=ESTs BE117298 1397070_at BF402703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402703 /DB_XREF=gi:11390678 /DB_XREF=UI-R-CA0-bho-f-02-0-UI.s1 /CLONE=UI-R-CA0-bho-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.53719.1 /TIER=ConsEnd /STK=2 /UG=Rn.53719 /UG_TITLE=ESTs BF402703 1397071_at BF404434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404434 /DB_XREF=gi:11392409 /DB_XREF=UI-R-CA1-bif-c-07-0-UI.s1 /CLONE=UI-R-CA1-bif-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.60499.1 /TIER=ConsEnd /STK=2 /UG=Rn.60499 /UG_TITLE=ESTs, Weakly similar to S50818 FE65 nuclear protein - rat (R.norvegicus) BF404434 amyloid beta (A4) precursor protein-binding, family B, member 2 Apbb2 305338 XM_001077874 /// XM_223399 0001764 // neuron migration // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0007411 // axon guidance // not recorded /// 0030198 // extracellular matrix organization // not recorded /// 0030308 // negative regulation of cell growth // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045749 // negative regulation of S phase of mitotic cell cycle // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded 1397072_at BF418026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418026 /DB_XREF=gi:11405980 /DB_XREF=UI-R-CA1-blv-b-06-0-UI.s1 /CLONE=UI-R-CA1-blv-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.61446.1 /TIER=ConsEnd /STK=2 /UG=Rn.61446 /UG_TITLE=ESTs BF418026 1397073_at BE117296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117296 /DB_XREF=gi:8509401 /DB_XREF=UI-R-BS1-ayn-b-04-0-UI.s1 /CLONE=UI-R-BS1-ayn-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.52816.1 /TIER=ConsEnd /STK=2 /UG=Rn.52816 /UG_TITLE=ESTs BE117296 1397074_at BF394099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394099 /DB_XREF=gi:11378963 /DB_XREF=UI-R-CA0-bgz-c-04-0-UI.s1 /CLONE=UI-R-CA0-bgz-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.58135.1 /TIER=ConsEnd /STK=2 /UG=Rn.58135 /UG_TITLE=ESTs BF394099 1397075_at BF405312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405312 /DB_XREF=gi:11393287 /DB_XREF=UI-R-CA1-biw-k-13-0-UI.s1 /CLONE=UI-R-CA1-biw-k-13-0-UI /FEA=EST /CNT=2 /TID=Rn.60730.1 /TIER=ConsEnd /STK=2 /UG=Rn.60730 /UG_TITLE=ESTs BF405312 1397076_at BF409722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409722 /DB_XREF=gi:11397697 /DB_XREF=UI-R-CA1-bls-a-05-0-UI.s1 /CLONE=UI-R-CA1-bls-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.61458.1 /TIER=ConsEnd /STK=2 /UG=Rn.61458 /UG_TITLE=ESTs, Highly similar to chimerin (chimaerin) 1 (Rattus norvegicus) (R.norvegicus) BF409722 chimerin (chimaerin) 1 /// similar to n-chimaerin Chn1 /// RGD1559751 498895 /// 84030 NM_032083 /// XM_001058285 /// XM_002725366 0007165 // signal transduction // traceable author statement /// 0007165 // signal transduction // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0001565 // phorbol ester receptor activity // traceable author statement /// 0005096 // GTPase activator activity // traceable author statement /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397077_at BF410515 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410515 /DB_XREF=gi:11398490 /DB_XREF=UI-R-CA0-bme-e-12-0-UI.s1 /CLONE=UI-R-CA0-bme-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.61731.1 /TIER=ConsEnd /STK=2 /UG=Rn.61731 /UG_TITLE=ESTs, Moderately similar to T46901 hypothetical protein DKFZp761C10121.1 (H.sapiens) BF410515 1397078_at AI111920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111920 /DB_XREF=gi:3511869 /DB_XREF=UI-R-A1-eh-c-04-0-UI.s1 /CLONE=UI-R-A1-eh-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.26677.1 /TIER=ConsEnd /STK=2 /UG=Rn.26677 /UG_TITLE=ESTs AI111920 integrin alpha FG-GAP repeat containing 2 Itfg2 362441 NM_001108648 1397079_at BF394313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394313 /DB_XREF=gi:11379177 /DB_XREF=UI-R-CA0-bgr-e-01-0-UI.s1 /CLONE=UI-R-CA0-bgr-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.58262.1 /TIER=ConsEnd /STK=2 /UG=Rn.58262 /UG_TITLE=ESTs BF394313 1397080_at BM390517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390517 /DB_XREF=gi:18190570 /DB_XREF=UI-R-CN1-cjq-p-24-0-UI.s1 /CLONE=UI-R-CN1-cjq-p-24-0-UI /FEA=EST /CNT=2 /TID=Rn.82232.1 /TIER=ConsEnd /STK=2 /UG=Rn.82232 /UG_TITLE=ESTs BM390517 1397081_at BE120697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120697 /DB_XREF=gi:8512802 /DB_XREF=UI-R-CA0-bay-e-04-0-UI.s1 /CLONE=UI-R-CA0-bay-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.53282.1 /TIER=ConsEnd /STK=2 /UG=Rn.53282 /UG_TITLE=ESTs BE120697 1397082_at BF414044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414044 /DB_XREF=gi:11402033 /DB_XREF=UI-R-BJ2-bol-g-03-0-UI.s1 /CLONE=UI-R-BJ2-bol-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.62505.1 /TIER=ConsEnd /STK=2 /UG=Rn.62505 /UG_TITLE=ESTs, Highly similar to F263_RAT 6-PHOSPHOFRUCTO-2-KINASEFRUCTOSE-2,6-BIPHOSPHATASE 3 (6PF-2-KFRU-2,6-P2ASE BRAIN-TYPE ISOZYME) (RB2K) (INCLUDES: 6-PHOSPHOFRUCTO-2-KINASE ; FRUCTOSE-2,6-BISPHOSPHATASE ) (R.norvegicus) BF414044 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 Pfkfb3 117276 NM_057135 0006000 // fructose metabolic process // inferred from electronic annotation /// 0006003 // fructose 2,6-bisphosphate metabolic process // inferred from direct assay /// 0006003 // fructose 2,6-bisphosphate metabolic process // inferred from electronic annotation /// 0006110 // regulation of glycolysis // traceable author statement /// 0007420 // brain development // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003873 // 6-phosphofructo-2-kinase activity // inferred from electronic annotation /// 0004331 // fructose-2,6-bisphosphate 2-phosphatase activity // traceable author statement /// 0004331 // fructose-2,6-bisphosphate 2-phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1397083_at BF416277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416277 /DB_XREF=gi:11404266 /DB_XREF=UI-R-CA0-bkr-e-09-0-UI.s1 /CLONE=UI-R-CA0-bkr-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.62972.1 /TIER=ConsEnd /STK=2 /UG=Rn.62972 /UG_TITLE=ESTs BF416277 1397084_at AW530928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530928 /DB_XREF=gi:7173342 /DB_XREF=UI-R-C4-alf-b-04-0-UI.s1 /CLONE=UI-R-C4-alf-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.47378.1 /TIER=ConsEnd /STK=2 /UG=Rn.47378 /UG_TITLE=ESTs AW530928 1397085_at BE115314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115314 /DB_XREF=gi:8507419 /DB_XREF=UI-R-CA0-axr-g-09-0-UI.s1 /CLONE=UI-R-CA0-axr-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.57794.1 /TIER=ConsEnd /STK=2 /UG=Rn.57794 /UG_TITLE=ESTs, Highly similar to TRIO_HUMAN TRIPLE FUNCTIONAL DOMAIN PROTEIN (H.sapiens) BE115314 1397086_at BI295629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295629 /DB_XREF=gi:14959269 /DB_XREF=UI-R-DK0-cek.1-f-05-0-UI.s2 /CLONE=UI-R-DK0-cek.1-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.79731.1 /TIER=ConsEnd /STK=2 /UG=Rn.79731 /UG_TITLE=ESTs, Weakly similar to T02669 hypothetical protein R31449_1 (H.sapiens) BI295629 GIPC PDZ domain containing family, member 3 Gipc3 500789 NM_001109282 0005515 // protein binding // inferred from electronic annotation 1397087_at BF414403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414403 /DB_XREF=gi:11402392 /DB_XREF=UI-R-CA0-bpa-a-04-0-UI.s1 /CLONE=UI-R-CA0-bpa-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.51499.1 /TIER=ConsEnd /STK=2 /UG=Rn.51499 /UG_TITLE=ESTs BF414403 1397088_at BE110222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110222 /DB_XREF=gi:8502327 /DB_XREF=UI-R-CA0-axk-e-04-0-UI.s1 /CLONE=UI-R-CA0-axk-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.59671.1 /TIER=ConsEnd /STK=2 /UG=Rn.59671 /UG_TITLE=ESTs BE110222 1397089_at BF399386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399386 /DB_XREF=gi:11384390 /DB_XREF=UI-R-CA1-bjb-o-02-0-UI.s1 /CLONE=UI-R-CA1-bjb-o-02-0-UI /FEA=EST /CNT=2 /TID=Rn.59362.1 /TIER=ConsEnd /STK=2 /UG=Rn.59362 /UG_TITLE=ESTs BF399386 1397090_at BF399642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399642 /DB_XREF=gi:11384652 /DB_XREF=UI-R-CA0-bhu-h-08-0-UI.s2 /CLONE=UI-R-CA0-bhu-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.59419.1 /TIER=ConsEnd /STK=2 /UG=Rn.59419 /UG_TITLE=ESTs BF399642 1397091_at BF411156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411156 /DB_XREF=gi:11399131 /DB_XREF=UI-R-BT1-bmm-f-11-0-UI.s1 /CLONE=UI-R-BT1-bmm-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.61811.1 /TIER=ConsEnd /STK=2 /UG=Rn.61811 /UG_TITLE=ESTs BF411156 1397092_at AI145850 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145850 /DB_XREF=gi:3667649 /DB_XREF=UI-R-BT0-pz-e-03-0-UI.s1 /CLONE=UI-R-BT0-pz-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.37715.1 /TIER=ConsEnd /STK=2 /UG=Rn.37715 /UG_TITLE=ESTs AI145850 armadillo repeat containing 9 Armc9 301579 NM_001109663 0005488 // binding // inferred from electronic annotation 1397093_at BF398550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398550 /DB_XREF=gi:11383543 /DB_XREF=UI-R-BS2-beq-b-04-0-UI.s1 /CLONE=UI-R-BS2-beq-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.59112.1 /TIER=ConsEnd /STK=2 /UG=Rn.59112 /UG_TITLE=ESTs BF398550 1397094_at BF400212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400212 /DB_XREF=gi:11385223 /DB_XREF=UI-R-CA1-bjc-b-03-0-UI.s1 /CLONE=UI-R-CA1-bjc-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.59567.1 /TIER=ConsEnd /STK=2 /UG=Rn.59567 /UG_TITLE=ESTs BF400212 1397095_at BF411970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411970 /DB_XREF=gi:11399924 /DB_XREF=UI-R-BT1-bmx-c-03-0-UI.s1 /CLONE=UI-R-BT1-bmx-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.61962.1 /TIER=ConsEnd /STK=2 /UG=Rn.61962 /UG_TITLE=ESTs BF411970 1397096_at BF413218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413218 /DB_XREF=gi:11401207 /DB_XREF=UI-R-BT1-bny-b-09-0-UI.s1 /CLONE=UI-R-BT1-bny-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.62219.1 /TIER=ConsEnd /STK=2 /UG=Rn.62219 /UG_TITLE=ESTs BF413218 1397097_x_at BI285806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285806 /DB_XREF=gi:14939825 /DB_XREF=UI-R-CX0s-ccv-b-02-0-UI.s1 /CLONE=UI-R-CX0s-ccv-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.78533.1 /TIER=ConsEnd /STK=2 /UG=Rn.78533 /UG_TITLE=ESTs BI285806 1397098_at BF404299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404299 /DB_XREF=gi:11392274 /DB_XREF=UI-R-CA1-bjd-i-03-0-UI.s1 /CLONE=UI-R-CA1-bjd-i-03-0-UI /FEA=EST /CNT=2 /TID=Rn.59393.1 /TIER=ConsEnd /STK=2 /UG=Rn.59393 /UG_TITLE=ESTs BF404299 Sidekick homolog 2 (chicken) Sdk2 360652 NM_001108303 1397099_at BF567424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567424 /DB_XREF=gi:11677154 /DB_XREF=UI-R-BO0-ahz-c-04-0-UI.r1 /CLONE=UI-R-BO0-ahz-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.45865.1 /TIER=ConsEnd /STK=2 /UG=Rn.45865 /UG_TITLE=ESTs BF567424 1397100_at BF403835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403835 /DB_XREF=gi:11391810 /DB_XREF=UI-R-CA1-bix-h-11-0-UI.s1 /CLONE=UI-R-CA1-bix-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.62730.1 /TIER=ConsEnd /STK=2 /UG=Rn.62730 /UG_TITLE=ESTs BF403835 transmembrane protein 170B Tmem170b 361230 NM_001008774 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1397101_at BF393994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393994 /DB_XREF=gi:11378823 /DB_XREF=UI-R-CA0-bgx-b-05-0-UI.s1 /CLONE=UI-R-CA0-bgx-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.58185.1 /TIER=ConsEnd /STK=2 /UG=Rn.58185 /UG_TITLE=ESTs BF393994 1397102_at AI502196 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502196 /DB_XREF=gi:4400047 /DB_XREF=UI-R-E0-cv-b-10-0-UI.s1 /CLONE=UI-R-E0-cv-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.35374.1 /TIER=ConsEnd /STK=2 /UG=Rn.35374 /UG_TITLE=ESTs, Weakly similar to S12207 hypothetical protein (M.musculus) AI502196 1397103_at BF393095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393095 /DB_XREF=gi:11377955 /DB_XREF=UI-R-CA0-bgu-e-05-0-UI.s1 /CLONE=UI-R-CA0-bgu-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.53143.1 /TIER=ConsEnd /STK=2 /UG=Rn.53143 /UG_TITLE=ESTs BF393095 1397104_at AW527590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527590 /DB_XREF=gi:7170004 /DB_XREF=UI-R-BT1-ajz-a-05-0-UI.s1 /CLONE=UI-R-BT1-ajz-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.46587.1 /TIER=ConsEnd /STK=2 /UG=Rn.46587 /UG_TITLE=ESTs AW527590 1397105_at BE095920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095920 /DB_XREF=gi:8486851 /DB_XREF=UI-R-BU0-apd-b-12-0-UI.s1 /CLONE=UI-R-BU0-apd-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.49379.1 /TIER=ConsEnd /STK=2 /UG=Rn.49379 /UG_TITLE=ESTs, Highly similar to A56068 co-repressor protein - mouse (M.musculus) BE095920 SIN3 homolog A, transcription regulator (yeast) Sin3a 363067 NM_001108761 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0006260 // DNA replication // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007568 // aging // inferred from direct assay /// 0010243 // response to organic nitrogen // inferred from direct assay /// 0034613 // cellular protein localization // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043619 // regulation of transcription from RNA polymerase II promoter in response to oxidative stress // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0051329 // interphase of mitotic cell cycle // not recorded 0000776 // kinetochore // not recorded /// 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016580 // Sin3 complex // not recorded /// 0043234 // protein complex // inferred from direct assay 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0032403 // protein complex binding // inferred from direct assay 1397106_at BE101327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101327 /DB_XREF=gi:8493239 /DB_XREF=UI-R-BJ1-aui-g-03-0-UI.s1 /CLONE=UI-R-BJ1-aui-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.50008.1 /TIER=ConsEnd /STK=2 /UG=Rn.50008 /UG_TITLE=ESTs BE101327 1397107_at BE114486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114486 /DB_XREF=gi:8506591 /DB_XREF=UI-R-CA0-axm-g-05-0-UI.s1 /CLONE=UI-R-CA0-axm-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.51551.1 /TIER=ConsEnd /STK=2 /UG=Rn.51551 /UG_TITLE=ESTs BE114486 1397108_at BE110342 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110342 /DB_XREF=gi:8502447 /DB_XREF=UI-R-CA0-axl-h-05-0-UI.s1 /CLONE=UI-R-CA0-axl-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.56172.1 /TIER=ConsEnd /STK=2 /UG=Rn.56172 /UG_TITLE=ESTs BE110342 1397109_at BF390889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390889 /DB_XREF=gi:11375736 /DB_XREF=UI-R-CA1-bci-f-08-0-UI.s1 /CLONE=UI-R-CA1-bci-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.57317.1 /TIER=ConsEnd /STK=2 /UG=Rn.57317 /UG_TITLE=ESTs BF390889 1397110_at BF403686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403686 /DB_XREF=gi:11391661 /DB_XREF=UI-R-CA1-bix-j-06-0-UI.s1 /CLONE=UI-R-CA1-bix-j-06-0-UI /FEA=EST /CNT=2 /TID=Rn.60345.1 /TIER=ConsEnd /STK=2 /UG=Rn.60345 /UG_TITLE=ESTs, Weakly similar to SEP3_MOUSE Neuronal-specific septin 3 (M.musculus) BF403686 1397111_at BF409107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409107 /DB_XREF=gi:11397082 /DB_XREF=UI-R-BT1-bkm-a-10-0-UI.s1 /CLONE=UI-R-BT1-bkm-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.61234.1 /TIER=ConsEnd /STK=2 /UG=Rn.61234 /UG_TITLE=ESTs BF409107 1397112_at BF415784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415784 /DB_XREF=gi:11403773 /DB_XREF=UI-R-CA0-bke-h-03-0-UI.s1 /CLONE=UI-R-CA0-bke-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.53698.1 /TIER=ConsEnd /STK=2 /UG=Rn.53698 /UG_TITLE=ESTs BF415784 1397113_at BF390720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390720 /DB_XREF=gi:11375567 /DB_XREF=UI-R-CA1-bco-f-08-0-UI.s1 /CLONE=UI-R-CA1-bco-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.57249.1 /TIER=ConsEnd /STK=2 /UG=Rn.57249 /UG_TITLE=ESTs, Highly similar to A53542 brefeldin A-sensitive Golgi protein LDLC (H.sapiens) BF390720 component of oligomeric golgi complex 2 Cog2 690961 NM_001110494 0006891 // intra-Golgi vesicle-mediated transport // not recorded /// 0007030 // Golgi organization // inferred from electronic annotation /// 0007030 // Golgi organization // not recorded /// 0015031 // protein transport // inferred from electronic annotation 0005795 // Golgi stack // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0017119 // Golgi transport complex // inferred from direct assay /// 0017119 // Golgi transport complex // not recorded 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // not recorded /// 0032403 // protein complex binding // inferred from direct assay 1397114_at BF388191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388191 /DB_XREF=gi:11373015 /DB_XREF=UI-R-CA1-bca-d-05-0-UI.s1 /CLONE=UI-R-CA1-bca-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.59175.1 /TIER=ConsEnd /STK=2 /UG=Rn.59175 /UG_TITLE=ESTs BF388191 1397115_at BF409361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409361 /DB_XREF=gi:11397336 /DB_XREF=UI-R-CA1-blf-b-08-0-UI.s1 /CLONE=UI-R-CA1-blf-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.61328.1 /TIER=ConsEnd /STK=2 /UG=Rn.61328 /UG_TITLE=ESTs BF409361 1397116_at BF392810 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392810 /DB_XREF=gi:11377668 /DB_XREF=UI-R-CA0-bfo-e-07-0-UI.s1 /CLONE=UI-R-CA0-bfo-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.57917.1 /TIER=ConsEnd /STK=2 /UG=Rn.57917 /UG_TITLE=ESTs BF392810 1397117_at BF400245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400245 /DB_XREF=gi:11385256 /DB_XREF=UI-R-CA1-bjc-h-03-0-UI.s1 /CLONE=UI-R-CA1-bjc-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.59573.1 /TIER=ConsEnd /STK=2 /UG=Rn.59573 /UG_TITLE=ESTs BF400245 1397118_at BF413386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413386 /DB_XREF=gi:11401375 /DB_XREF=UI-R-CA0-boe-e-01-0-UI.s1 /CLONE=UI-R-CA0-boe-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.62327.1 /TIER=ConsEnd /STK=2 /UG=Rn.62327 /UG_TITLE=ESTs BF413386 1397119_at BF563062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563062 /DB_XREF=gi:11672792 /DB_XREF=UI-R-BO1-aiy-b-05-0-UI.r1 /CLONE=UI-R-BO1-aiy-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.46058.1 /TIER=ConsEnd /STK=2 /UG=Rn.46058 /UG_TITLE=ESTs BF563062 1397120_at BF409530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409530 /DB_XREF=gi:11397505 /DB_XREF=UI-R-CA1-bll-c-12-0-UI.s1 /CLONE=UI-R-CA1-bll-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.61388.1 /TIER=ConsEnd /STK=2 /UG=Rn.61388 /UG_TITLE=ESTs BF409530 1397121_at BI298734 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298734 /DB_XREF=gi:14975014 /DB_XREF=UI-R-CV2-chn-b-03-0-UI.s1 /CLONE=UI-R-CV2-chn-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.76750.1 /TIER=ConsEnd /STK=2 /UG=Rn.76750 /UG_TITLE=ESTs BI298734 RT1 class I, locus T24, gene 2 RT1-T24-2 415057 NR_002151 1397122_at BF393071 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393071 /DB_XREF=gi:11377931 /DB_XREF=UI-R-CA0-bgu-b-02-0-UI.s1 /CLONE=UI-R-CA0-bgu-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.57978.1 /TIER=ConsEnd /STK=2 /UG=Rn.57978 /UG_TITLE=ESTs BF393071 1397123_at BE106480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106480 /DB_XREF=gi:8498582 /DB_XREF=UI-R-BO1-aso-e-03-0-UI.s1 /CLONE=UI-R-BO1-aso-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.46664.1 /TIER=ConsEnd /STK=2 /UG=Rn.46664 /UG_TITLE=ESTs BE106480 1397124_at BE119960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119960 /DB_XREF=gi:8512065 /DB_XREF=UI-R-CA0-bao-a-04-0-UI.s1 /CLONE=UI-R-CA0-bao-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.53408.1 /TIER=ConsEnd /STK=2 /UG=Rn.53408 /UG_TITLE=ESTs BE119960 1397125_at BF389547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389547 /DB_XREF=gi:11374382 /DB_XREF=UI-R-CJ0-bfd-a-05-0-UI.s1 /CLONE=UI-R-CJ0-bfd-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.56966.1 /TIER=ConsEnd /STK=2 /UG=Rn.56966 /UG_TITLE=ESTs BF389547 1397126_at BF403942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403942 /DB_XREF=gi:11391917 /DB_XREF=UI-R-CA1-bjd-l-07-0-UI.s1 /CLONE=UI-R-CA1-bjd-l-07-0-UI /FEA=EST /CNT=2 /TID=Rn.60395.1 /TIER=ConsEnd /STK=2 /UG=Rn.60395 /UG_TITLE=ESTs BF403942 1397127_at BE102322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102322 /DB_XREF=gi:8494421 /DB_XREF=UI-R-BT1-aql-b-08-0-UI.s1 /CLONE=UI-R-BT1-aql-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.61998.1 /TIER=ConsEnd /STK=2 /UG=Rn.61998 /UG_TITLE=ESTs BE102322 1397128_at BF392437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392437 /DB_XREF=gi:11377294 /DB_XREF=UI-R-CA0-bfj-b-12-0-UI.s1 /CLONE=UI-R-CA0-bfj-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.57820.1 /TIER=ConsEnd /STK=2 /UG=Rn.57820 /UG_TITLE=ESTs BF392437 1397129_at BE109908 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109908 /DB_XREF=gi:8502013 /DB_XREF=UI-R-CA0-axi-g-07-0-UI.s1 /CLONE=UI-R-CA0-axi-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.51768.1 /TIER=ConsEnd /STK=2 /UG=Rn.51768 /UG_TITLE=ESTs BE109908 1397130_at BE120200 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120200 /DB_XREF=gi:8512305 /DB_XREF=UI-R-CA0-bap-g-02-0-UI.s1 /CLONE=UI-R-CA0-bap-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.58201.1 /TIER=ConsEnd /STK=2 /UG=Rn.58201 /UG_TITLE=ESTs BE120200 1397131_at BG376825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376825 /DB_XREF=gi:13301297 /DB_XREF=UI-R-CA1-blh-f-03-0-UI.s1 /CLONE=UI-R-CA1-blh-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.61698.1 /TIER=ConsEnd /STK=2 /UG=Rn.61698 /UG_TITLE=ESTs BG376825 1397132_at BF390612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390612 /DB_XREF=gi:11375459 /DB_XREF=UI-R-CA1-bck-b-09-0-UI.s1 /CLONE=UI-R-CA1-bck-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.61306.1 /TIER=ConsEnd /STK=2 /UG=Rn.61306 /UG_TITLE=ESTs, Highly similar to zinc finger protein 207 (Mus musculus) (M.musculus) BF390612 Zinc finger protein 207 Zfp207 303763 NM_001039020 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0008270 // zinc ion binding // inferred from electronic annotation 1397133_at BF412814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412814 /DB_XREF=gi:11400803 /DB_XREF=UI-R-BT1-bnz-g-03-0-UI.s1 /CLONE=UI-R-BT1-bnz-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.62114.1 /TIER=ConsEnd /STK=2 /UG=Rn.62114 /UG_TITLE=ESTs BF412814 tudor domain containing 1 Tdrd1 292129 NM_001106202 0007281 // germ cell development // not recorded /// 0007283 // spermatogenesis // not recorded /// 0031047 // gene silencing by RNA // not recorded /// 0034587 // piRNA metabolic process // not recorded /// 0043046 // DNA methylation involved in gamete generation // not recorded 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0033391 // chromatoid body // not recorded /// 0043186 // P granule // not recorded /// 0071546 // pi-body // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397134_at BF414458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414458 /DB_XREF=gi:11402447 /DB_XREF=UI-R-CA0-bpa-g-05-0-UI.s1 /CLONE=UI-R-CA0-bpa-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.62549.1 /TIER=ConsEnd /STK=2 /UG=Rn.62549 /UG_TITLE=ESTs BF414458 1397135_at BE109290 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109290 /DB_XREF=gi:8501395 /DB_XREF=UI-R-BJ1-auq-b-07-0-UI.s1 /CLONE=UI-R-BJ1-auq-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.49833.1 /TIER=ConsEnd /STK=2 /UG=Rn.49833 /UG_TITLE=ESTs BE109290 1397136_at BE113047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113047 /DB_XREF=gi:8505152 /DB_XREF=UI-R-BJ1-awf-g-05-0-UI.s1 /CLONE=UI-R-BJ1-awf-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.52149.1 /TIER=ConsEnd /STK=2 /UG=Rn.52149 /UG_TITLE=ESTs BE113047 1397137_at BE114426 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114426 /DB_XREF=gi:8506531 /DB_XREF=UI-R-CA0-axm-b-03-0-UI.s1 /CLONE=UI-R-CA0-axm-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.52379.1 /TIER=ConsEnd /STK=2 /UG=Rn.52379 /UG_TITLE=ESTs BE114426 1397138_at BF396994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396994 /DB_XREF=gi:11381977 /DB_XREF=UI-R-BS2-beb-e-12-0-UI.s1 /CLONE=UI-R-BS2-beb-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.58731.1 /TIER=ConsEnd /STK=2 /UG=Rn.58731 /UG_TITLE=ESTs BF396994 1397139_at BF413644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413644 /DB_XREF=gi:11401633 /DB_XREF=UI-R-CA0-bog-g-12-0-UI.s1 /CLONE=UI-R-CA0-bog-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.62410.1 /TIER=ConsEnd /STK=2 /UG=Rn.62410 /UG_TITLE=ESTs BF413644 1397140_at BF390574 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390574 /DB_XREF=gi:11375420 /DB_XREF=UI-R-CA1-bcc-f-07-0-UI.s1 /CLONE=UI-R-CA1-bcc-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.57196.1 /TIER=ConsEnd /STK=2 /UG=Rn.57196 /UG_TITLE=ESTs BF390574 1397141_at BE097236 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097236 /DB_XREF=gi:8488167 /DB_XREF=UI-R-BO1-apu-h-08-0-UI.s1 /CLONE=UI-R-BO1-apu-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.49083.1 /TIER=ConsEnd /STK=2 /UG=Rn.49083 /UG_TITLE=ESTs BE097236 1397142_at BE108541 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108541 /DB_XREF=gi:8500646 /DB_XREF=UI-R-CA0-axf-e-01-0-UI.s1 /CLONE=UI-R-CA0-axf-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.51517.1 /TIER=ConsEnd /STK=2 /UG=Rn.51517 /UG_TITLE=ESTs BE108541 1397143_at BF392779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392779 /DB_XREF=gi:11377637 /DB_XREF=UI-R-CA0-bfo-b-07-0-UI.s1 /CLONE=UI-R-CA0-bfo-b-07-0-UI /FEA=EST /CNT=2 /TID=Rn.57908.1 /TIER=ConsEnd /STK=2 /UG=Rn.57908 /UG_TITLE=ESTs BF392779 1397144_at BE109216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109216 /DB_XREF=gi:8501321 /DB_XREF=UI-R-BS1-azd-c-05-0-UI.s1 /CLONE=UI-R-BS1-azd-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.51694.1 /TIER=ConsEnd /STK=2 /UG=Rn.51694 /UG_TITLE=ESTs BE109216 1397145_at BF387349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387349 /DB_XREF=gi:11372173 /DB_XREF=UI-R-CA1-bbr-d-08-0-UI.s1 /CLONE=UI-R-CA1-bbr-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.56482.1 /TIER=ConsEnd /STK=2 /UG=Rn.56482 /UG_TITLE=ESTs BF387349 1397146_at AI137437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137437 /DB_XREF=gi:3638214 /DB_XREF=UI-R-C2p-ok-f-10-0-UI.s1 /CLONE=UI-R-C2p-ok-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.27425.1 /TIER=ConsEnd /STK=2 /UG=Rn.27425 /UG_TITLE=ESTs AI137437 1397147_at AW526199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526199 /DB_XREF=gi:7168584 /DB_XREF=UI-R-BO1-aju-c-08-0-UI.s1 /CLONE=UI-R-BO1-aju-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.46115.1 /TIER=ConsEnd /STK=2 /UG=Rn.46115 /UG_TITLE=ESTs AW526199 1397148_at BE120535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120535 /DB_XREF=gi:8512640 /DB_XREF=UI-R-CA0-bat-f-02-0-UI.s1 /CLONE=UI-R-CA0-bat-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.53592.1 /TIER=ConsEnd /STK=2 /UG=Rn.53592 /UG_TITLE=ESTs BE120535 1397149_at BF395834 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395834 /DB_XREF=gi:11380805 /DB_XREF=UI-R-BT1-bkc-g-09-0-UI.s1 /CLONE=UI-R-BT1-bkc-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.58463.1 /TIER=ConsEnd /STK=2 /UG=Rn.58463 /UG_TITLE=ESTs BF395834 1397150_at BF401529 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401529 /DB_XREF=gi:11389504 /DB_XREF=UI-R-CA0-bgl-f-06-0-UI.s1 /CLONE=UI-R-CA0-bgl-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.59715.1 /TIER=ConsEnd /STK=2 /UG=Rn.59715 /UG_TITLE=ESTs BF401529 1397151_at BE108017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108017 /DB_XREF=gi:8500122 /DB_XREF=UI-R-CA0-awz-d-11-0-UI.s1 /CLONE=UI-R-CA0-awz-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.51383.1 /TIER=ConsEnd /STK=2 /UG=Rn.51383 /UG_TITLE=ESTs BE108017 1397152_at BE108638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108638 /DB_XREF=gi:8500743 /DB_XREF=UI-R-CA0-axg-f-08-0-UI.s1 /CLONE=UI-R-CA0-axg-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.51558.1 /TIER=ConsEnd /STK=2 /UG=Rn.51558 /UG_TITLE=ESTs BE108638 1397153_at BE115262 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115262 /DB_XREF=gi:8507367 /DB_XREF=UI-R-CA0-axr-c-01-0-UI.s1 /CLONE=UI-R-CA0-axr-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.52477.1 /TIER=ConsEnd /STK=2 /UG=Rn.52477 /UG_TITLE=ESTs BE115262 1397154_at BF403248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403248 /DB_XREF=gi:11391223 /DB_XREF=UI-R-CA1-biy-g-09-0-UI.s1 /CLONE=UI-R-CA1-biy-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.59222.1 /TIER=ConsEnd /STK=2 /UG=Rn.59222 /UG_TITLE=ESTs BF403248 1397155_at BF393137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393137 /DB_XREF=gi:11377997 /DB_XREF=UI-R-CA0-bfp-b-10-0-UI.s1 /CLONE=UI-R-CA0-bfp-b-10-0-UI /FEA=EST /CNT=2 /TID=Rn.51567.1 /TIER=ConsEnd /STK=2 /UG=Rn.51567 /UG_TITLE=ESTs BF393137 1397156_at BE110322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110322 /DB_XREF=gi:8502427 /DB_XREF=UI-R-CA0-axl-f-05-0-UI.s1 /CLONE=UI-R-CA0-axl-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.51876.1 /TIER=ConsEnd /STK=2 /UG=Rn.51876 /UG_TITLE=ESTs BE110322 1397157_at BF411716 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411716 /DB_XREF=gi:11399705 /DB_XREF=UI-R-BT1-bmq-a-08-0-UI.s1 /CLONE=UI-R-BT1-bmq-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.61905.1 /TIER=ConsEnd /STK=2 /UG=Rn.61905 /UG_TITLE=ESTs BF411716 1397158_at BF419835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419835 /DB_XREF=gi:11407824 /DB_XREF=UI-R-CA0-bpg-g-08-0-UI.s1 /CLONE=UI-R-CA0-bpg-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.62662.1 /TIER=ConsEnd /STK=2 /UG=Rn.62662 /UG_TITLE=ESTs BF419835 1397159_at BF394208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394208 /DB_XREF=gi:11379072 /DB_XREF=UI-R-CA0-bhb-h-05-0-UI.s1 /CLONE=UI-R-CA0-bhb-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.53726.1 /TIER=ConsEnd /STK=2 /UG=Rn.53726 /UG_TITLE=ESTs BF394208 1397160_at BE108549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108549 /DB_XREF=gi:8500654 /DB_XREF=UI-R-CA0-axf-e-10-0-UI.s1 /CLONE=UI-R-CA0-axf-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.53790.1 /TIER=ConsEnd /STK=2 /UG=Rn.53790 /UG_TITLE=ESTs BE108549 1397161_a_at AF132672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF132672.1 /DB_XREF=gi:4838525 /FEA=FLmRNA /CNT=1 /TID=Rn.48657.2 /TIER=FL /STK=1 /UG=Rn.48657 /LL=29491 /UG_GENE=Itsn /DEF=Rattus norvegicus EH-domainSH3-domain containing protein mRNA, complete cds. /PROD=EH-domainSH3-domain containing protein /FL=gb:AF132672.1 AF132672 intersectin 1 (SH3 domain protein) Itsn1 29491 NM_001136096 /// NM_019227 0006887 // exocytosis // traceable author statement /// 0006897 // endocytosis // inferred from electronic annotation /// 0006915 // apoptosis // not recorded /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0042327 // positive regulation of phosphorylation // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030139 // endocytic vesicle // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0019209 // kinase activator activity // not recorded 1397162_x_at M57705 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M57705.1 /DB_XREF=gi:207325 /GEN=thyroid peroxidase /FEA=mRNA /CNT=1 /TID=Rn.37412.1 /TIER=ConsEnd /STK=0 /UG=Rn.37412 /DEF=Rat truncated thyroid peroxidase mRNA, 3 end. /PROD=truncated thyroid peroxidase M57705 Thyroid peroxidase Tpo 54314 NM_019353 0006590 // thyroid hormone generation // traceable author statement /// 0006979 // response to oxidative stress // inferred from electronic annotation /// 0042446 // hormone biosynthetic process // inferred from electronic annotation /// 0042744 // hydrogen peroxide catabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004447 // iodide peroxidase activity // traceable author statement /// 0004447 // iodide peroxidase activity // inferred from electronic annotation /// 0004601 // peroxidase activity // not recorded /// 0004601 // peroxidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397163_s_at BM392082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392082 /DB_XREF=gi:18192135 /DB_XREF=UI-R-DO1-ckp-i-03-0-UI.s1 /CLONE=UI-R-DO1-ckp-i-03-0-UI /FEA=EST /CNT=3 /TID=Rn.81244.1 /TIER=ConsEnd /STK=2 /UG=Rn.81244 /UG_TITLE=ESTs BM392082 1397164_at AI175779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175779 /DB_XREF=gi:3726417 /DB_XREF=EST219348 /CLONE=ROVBF28 /FEA=EST /CNT=6 /TID=Rn.55633.1 /TIER=ConsEnd /STK=1 /UG=Rn.55633 /UG_TITLE=ESTs AI175779 1397165_at BF547582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547582 /DB_XREF=gi:11638647 /DB_XREF=UI-R-C1-ka-f-01-0-UI.r1 /CLONE=UI-R-C1-ka-f-01-0-UI /FEA=EST /CNT=6 /TID=Rn.16194.1 /TIER=ConsEnd /STK=1 /UG=Rn.16194 /UG_TITLE=ESTs BF547582 1397166_at AI713223 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI713223 /DB_XREF=gi:5017023 /DB_XREF=UI-R-Y0-aaz-f-08-0-UI.s1 /CLONE=UI-R-Y0-aaz-f-08-0-UI /FEA=EST /CNT=6 /TID=Rn.41379.1 /TIER=ConsEnd /STK=1 /UG=Rn.41379 /UG_TITLE=ESTs AI713223 1397167_at AW534046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534046 /DB_XREF=gi:7176460 /DB_XREF=UI-R-C4-alm-d-12-0-UI.s1 /CLONE=UI-R-C4-alm-d-12-0-UI /FEA=EST /CNT=5 /TID=Rn.48246.1 /TIER=ConsEnd /STK=1 /UG=Rn.48246 /UG_TITLE=ESTs AW534046 1397168_at AI180093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180093 /DB_XREF=gi:3730731 /DB_XREF=EST223829 /CLONE=RSPCQ03 /FEA=EST /CNT=5 /TID=Rn.42478.1 /TIER=ConsEnd /STK=1 /UG=Rn.42478 /UG_TITLE=ESTs AI180093 1397169_at BF283075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283075 /DB_XREF=gi:11214145 /DB_XREF=EST447666 /CLONE=RGIDX18 /FEA=EST /CNT=5 /TID=Rn.56007.1 /TIER=ConsEnd /STK=1 /UG=Rn.56007 /UG_TITLE=ESTs BF283075 1397170_at AI137477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137477 /DB_XREF=gi:3638254 /DB_XREF=UI-R-C2p-ol-e-12-0-UI.s1 /CLONE=UI-R-C2p-ol-e-12-0-UI /FEA=EST /CNT=5 /TID=Rn.27435.1 /TIER=ConsEnd /STK=1 /UG=Rn.27435 /UG_TITLE=ESTs AI137477 1397171_at BF413241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413241 /DB_XREF=gi:11401230 /DB_XREF=UI-R-BT1-bny-e-05-0-UI.s1 /CLONE=UI-R-BT1-bny-e-05-0-UI /FEA=EST /CNT=5 /TID=Rn.62606.1 /TIER=ConsEnd /STK=1 /UG=Rn.62606 /UG_TITLE=ESTs BF413241 ring finger protein, transmembrane 2 Rnft2 304521 NM_001107144 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397172_at AW917094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917094 /DB_XREF=gi:8082836 /DB_XREF=EST348398 /CLONE=RGIDZ20 /FEA=EST /CNT=5 /TID=Rn.56022.1 /TIER=ConsEnd /STK=1 /UG=Rn.56022 /UG_TITLE=ESTs, Highly similar to GERp95 (Rattus norvegicus) (R.norvegicus) AW917094 eukaryotic translation initiation factor 2C, 3 Eif2c3 313593 XM_001058231 /// XM_233543 0006402 // mRNA catabolic process // not recorded /// 0035278 // negative regulation of translation involved in gene silencing by miRNA // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1397173_at BE109095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109095 /DB_XREF=gi:8501200 /DB_XREF=UI-R-BS1-azc-h-07-0-UI.s1 /CLONE=UI-R-BS1-azc-h-07-0-UI /FEA=EST /CNT=5 /TID=Rn.31723.1 /TIER=ConsEnd /STK=1 /UG=Rn.31723 /UG_TITLE=ESTs BE109095 1397174_at AW520453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520453 /DB_XREF=gi:7162831 /DB_XREF=UI-R-BJ0p-afs-f-09-0-UI.s1 /CLONE=UI-R-BJ0p-afs-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.45031.1 /TIER=ConsEnd /STK=1 /UG=Rn.45031 /UG_TITLE=ESTs AW520453 1397175_at AW142403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW142403 /DB_XREF=gi:6162302 /DB_XREF=EST292655 /CLONE=RGIAK67 /FEA=EST /CNT=5 /TID=Rn.55196.1 /TIER=ConsEnd /STK=1 /UG=Rn.55196 /UG_TITLE=ESTs AW142403 1397176_at AI104417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104417 /DB_XREF=gi:3708775 /DB_XREF=EST213706 /CLONE=RHECD03 /FEA=EST /CNT=5 /TID=Rn.29892.1 /TIER=ConsEnd /STK=1 /UG=Rn.29892 /UG_TITLE=ESTs AI104417 methyltransferase like 6 Mettl6 290564 NM_001007623 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1397177_at BF409052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409052 /DB_XREF=gi:11397027 /DB_XREF=UI-R-BT1-bkl-d-10-0-UI.s1 /CLONE=UI-R-BT1-bkl-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.46527.1 /TIER=ConsEnd /STK=1 /UG=Rn.46527 /UG_TITLE=ESTs, Weakly similar to CADHERIN-6 PRECURSOR (R.norvegicus) BF409052 1397178_at AA899041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899041 /DB_XREF=gi:4231540 /DB_XREF=UI-R-E0-bz-a-03-0-UI.s2 /CLONE=UI-R-E0-bz-a-03-0-UI /FEA=EST /CNT=5 /TID=Rn.32366.1 /TIER=ConsEnd /STK=1 /UG=Rn.32366 /UG_TITLE=ESTs AA899041 1397179_at BF544981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF544981 /DB_XREF=gi:11636088 /DB_XREF=UI-R-C2p-rh-g-01-0-UI.r1 /CLONE=UI-R-C2p-rh-g-01-0-UI /FEA=EST /CNT=5 /TID=Rn.40439.1 /TIER=ConsEnd /STK=1 /UG=Rn.40439 /UG_TITLE=ESTs BF544981 similar to DIP13 alpha RGD1309388 290537 XM_002725153 /// XM_002728373 1397180_at AA998484 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998484 /DB_XREF=gi:4290182 /DB_XREF=UI-R-C0-ie-c-08-0-UI.s1 /CLONE=UI-R-C0-ie-c-08-0-UI /FEA=EST /CNT=5 /TID=Rn.38693.1 /TIER=ConsEnd /STK=1 /UG=Rn.38693 /UG_TITLE=ESTs AA998484 serine/threonine/tyrosine interacting-like 1 Styxl1 360792 NM_001037788 0006470 // protein dephosphorylation // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008138 // protein tyrosine/serine/threonine phosphatase activity // inferred from electronic annotation 1397181_at BF290034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290034 /DB_XREF=gi:11221104 /DB_XREF=EST454625 /CLONE=RGIHM88 /FEA=EST /CNT=5 /TID=Rn.55875.1 /TIER=ConsEnd /STK=1 /UG=Rn.55875 /UG_TITLE=ESTs BF290034 1397182_at AI169397 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169397 /DB_XREF=gi:3705705 /DB_XREF=EST215243 /CLONE=RKIBR77 /FEA=EST /CNT=5 /TID=Rn.28017.1 /TIER=ConsEnd /STK=1 /UG=Rn.28017 /UG_TITLE=ESTs, Moderately similar to TR11_HUMAN THYROID RECEPTOR INTERACTING PROTEIN 11 (H.sapiens) AI169397 fibulin 5 Fbln5 29158 NM_019153 0001558 // regulation of cell growth // inferred from expression pattern /// 0007155 // cell adhesion // inferred from electronic annotation /// 0030198 // extracellular matrix organization // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1397183_at BF404362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404362 /DB_XREF=gi:11392337 /DB_XREF=UI-R-CA1-bie-c-03-0-UI.s1 /CLONE=UI-R-CA1-bie-c-03-0-UI /FEA=EST /CNT=5 /TID=Rn.59426.1 /TIER=ConsEnd /STK=1 /UG=Rn.59426 /UG_TITLE=ESTs BF404362 1397184_at AI574688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI574688 /DB_XREF=gi:4544684 /DB_XREF=UI-R-G0-uc-c-01-0-UI.s1 /CLONE=UI-R-G0-uc-c-01-0-UI /FEA=EST /CNT=8 /TID=Rn.38628.1 /TIER=ConsEnd /STK=1 /UG=Rn.38628 /UG_TITLE=ESTs AI574688 hypothetical LOC292199 LOC292199 292199 NM_001144859 1397185_at BE102060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102060 /DB_XREF=gi:8494159 /DB_XREF=UI-R-BO1-aqe-h-06-0-UI.s1 /CLONE=UI-R-BO1-aqe-h-06-0-UI /FEA=EST /CNT=6 /TID=Rn.20306.1 /TIER=ConsEnd /STK=1 /UG=Rn.20306 /UG_TITLE=ESTs BE102060 1397186_at AW529325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529325 /DB_XREF=gi:7171739 /DB_XREF=UI-R-BT1-akm-f-09-0-UI.s1 /CLONE=UI-R-BT1-akm-f-09-0-UI /FEA=EST /CNT=5 /TID=Rn.47162.1 /TIER=ConsEnd /STK=1 /UG=Rn.47162 /UG_TITLE=ESTs AW529325 1397187_at BF283259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283259 /DB_XREF=gi:11214329 /DB_XREF=EST447850 /CLONE=RGIDZ45 /FEA=EST /CNT=5 /TID=Rn.53954.1 /TIER=ConsEnd /STK=1 /UG=Rn.53954 /UG_TITLE=ESTs, Weakly similar to T33900 hypothetical protein Y48A5A.1 - Caenorhabditis elegans (C.elegans) BF283259 Sumo1/sentrin/SMT3 specific peptidase 8 Senp8 315723 NM_001012355 0006508 // proteolysis // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1397188_at BF286886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF286886 /DB_XREF=gi:11217956 /DB_XREF=EST451477 /CLONE=RGIFU10 /FEA=EST /CNT=5 /TID=Rn.55389.1 /TIER=ConsEnd /STK=1 /UG=Rn.55389 /UG_TITLE=ESTs BF286886 1397189_at BE108217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108217 /DB_XREF=gi:8500287 /DB_XREF=UI-R-BS1-ayw-d-03-0-UI.s1 /CLONE=UI-R-BS1-ayw-d-03-0-UI /FEA=EST /CNT=5 /TID=Rn.60881.1 /TIER=ConsEnd /STK=1 /UG=Rn.60881 /UG_TITLE=ESTs BE108217 protein kinase C, beta Prkcb 25023 NM_001172305 /// NM_012713 0006350 // transcription // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006816 // calcium ion transport // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0014059 // regulation of dopamine secretion // inferred from mutant phenotype /// 0016568 // chromatin modification // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // non-traceable author statement /// 0033280 // response to vitamin D // inferred from expression pattern /// 0034339 // regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor // not recorded /// 0034339 // regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor // inferred from sequence or structural similarity /// 0035408 // histone H3-T6 phosphorylation // not recorded /// 0035408 // histone H3-T6 phosphorylation // inferred from sequence or structural similarity /// 0040008 // regulation of growth // inferred from mutant phenotype /// 0042113 // B cell activation // not recorded /// 0042113 // B cell activation // inferred from sequence or structural similarity /// 0042113 // B cell activation // inferred from electronic annotation /// 0042488 // positive regulation of odontogenesis of dentine-containing tooth // inferred from expression pattern /// 0042493 // response to drug // inferred from mutant phenotype /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from sequence or structural similarity /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045471 // response to ethanol // inferred from expression pattern /// 0050853 // B cell receptor signaling pathway // not recorded /// 0050853 // B cell receptor signaling pathway // inferred from sequence or structural similarity /// 0050853 // B cell receptor signaling pathway // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031526 // brush border membrane // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004697 // protein kinase C activity // inferred from direct assay /// 0004697 // protein kinase C activity // not recorded /// 0004697 // protein kinase C activity // inferred from electronic annotation /// 0005080 // protein kinase C binding // not recorded /// 0005246 // calcium channel regulator activity // not recorded /// 0005246 // calcium channel regulator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from sequence or structural similarity /// 0035403 // histone kinase activity (H3-T6 specific) // not recorded /// 0035403 // histone kinase activity (H3-T6 specific) // inferred from sequence or structural similarity /// 0042393 // histone binding // not recorded /// 0042393 // histone binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // not recorded /// 0050681 // androgen receptor binding // inferred from sequence or structural similarity 1397190_at AI576518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576518 /DB_XREF=gi:4560894 /DB_XREF=UI-R-G0-uq-c-03-0-UI.s1 /CLONE=UI-R-G0-uq-c-03-0-UI /FEA=EST /CNT=5 /TID=Rn.46732.1 /TIER=ConsEnd /STK=1 /UG=Rn.46732 /UG_TITLE=ESTs AI576518 1397191_at BF283024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283024 /DB_XREF=gi:11214094 /DB_XREF=EST447615 /CLONE=RGIDW46 /FEA=EST /CNT=5 /TID=Rn.56002.1 /TIER=ConsEnd /STK=1 /UG=Rn.56002 /UG_TITLE=ESTs BF283024 dishevelled associated activator of morphogenesis 1 Daam1 314212 NM_001108030 0016043 // cellular component organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from electronic annotation 1397192_at BF286046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF286046 /DB_XREF=gi:11217116 /DB_XREF=EST450637 /CLONE=RGIFL80 /FEA=EST /CNT=4 /TID=Rn.28155.1 /TIER=ConsEnd /STK=1 /UG=Rn.28155 /UG_TITLE=ESTs BF286046 MYC binding protein 2 Mycbp2 290447 NM_001106055 0008045 // motor axon guidance // not recorded /// 0021785 // branchiomotor neuron axon guidance // not recorded /// 0021952 // central nervous system projection neuron axonogenesis // not recorded /// 0030071 // regulation of mitotic metaphase/anaphase transition // inferred from electronic annotation /// 0032880 // regulation of protein localization // not recorded /// 0048667 // cell morphogenesis involved in neuron differentiation // not recorded /// 0051493 // regulation of cytoskeleton organization // not recorded 0005680 // anaphase-promoting complex // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded /// 0030424 // axon // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1397193_at BM385669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385669 /DB_XREF=gi:18185722 /DB_XREF=UI-R-CN1-clx-i-15-0-UI.s1 /CLONE=UI-R-CN1-clx-i-15-0-UI /FEA=EST /CNT=4 /TID=Rn.55647.1 /TIER=ConsEnd /STK=1 /UG=Rn.55647 /UG_TITLE=ESTs BM385669 1397194_at BE119170 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119170 /DB_XREF=gi:8511275 /DB_XREF=UI-R-CA0-azz-c-10-0-UI.s1 /CLONE=UI-R-CA0-azz-c-10-0-UI /FEA=EST /CNT=4 /TID=Rn.55320.1 /TIER=ConsEnd /STK=1 /UG=Rn.55320 /UG_TITLE=ESTs, Weakly similar to T12471 hypothetical protein DKFZp564E1962.1 (H.sapiens) BE119170 thioredoxin-related transmembrane protein 4 Tmx4 296182 NM_001100529 0045454 // cell redox homeostasis // inferred from electronic annotation 1397195_at AI110520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI110520 /DB_XREF=gi:3492666 /DB_XREF=427a /FEA=EST /CNT=4 /TID=Rn.46151.1 /TIER=ConsEnd /STK=1 /UG=Rn.46151 /UG_TITLE=ESTs AI110520 1397196_at AI102953 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102953 /DB_XREF=gi:3707586 /DB_XREF=EST212242 /CLONE=REMBV39 /FEA=EST /CNT=4 /TID=Rn.28194.1 /TIER=ConsEnd /STK=1 /UG=Rn.28194 /UG_TITLE=ESTs AI102953 1397197_at BE120228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120228 /DB_XREF=gi:8512333 /DB_XREF=UI-R-CA0-bal-a-07-0-UI.s1 /CLONE=UI-R-CA0-bal-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.53492.1 /TIER=ConsEnd /STK=1 /UG=Rn.53492 /UG_TITLE=ESTs BE120228 1397198_at BE111113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111113 /DB_XREF=gi:8503218 /DB_XREF=UI-R-BJ1-auz-g-07-0-UI.s1 /CLONE=UI-R-BJ1-auz-g-07-0-UI /FEA=EST /CNT=4 /TID=Rn.51964.1 /TIER=ConsEnd /STK=1 /UG=Rn.51964 /UG_TITLE=ESTs BE111113 1397199_at BF408180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408180 /DB_XREF=gi:11396155 /DB_XREF=UI-R-BJ2-bra-f-08-0-UI.s1 /CLONE=UI-R-BJ2-bra-f-08-0-UI /FEA=EST /CNT=4 /TID=Rn.54250.1 /TIER=ConsEnd /STK=1 /UG=Rn.54250 /UG_TITLE=ESTs BF408180 1397200_at BF412612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412612 /DB_XREF=gi:11400601 /DB_XREF=UI-R-BT1-bnp-h-05-0-UI.s1 /CLONE=UI-R-BT1-bnp-h-05-0-UI /FEA=EST /CNT=4 /TID=Rn.64178.1 /TIER=ConsEnd /STK=1 /UG=Rn.64178 /UG_TITLE=ESTs, Highly similar to CHD4_HUMAN CHROMODOMAIN HELICASE-DNA-BINDING PROTEIN 4 (H.sapiens) BF412612 chromodomain helicase DNA binding protein 4 Chd4 117535 XM_001063352 /// XM_232354 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0007231 // osmosensory signaling pathway // non-traceable author statement /// 0045449 // regulation of transcription // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0016581 // NuRD complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation 1397201_at BE107286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107286 /DB_XREF=gi:8499391 /DB_XREF=UI-R-BS1-ays-a-07-0-UI.s1 /CLONE=UI-R-BS1-ays-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.51149.1 /TIER=ConsEnd /STK=1 /UG=Rn.51149 /UG_TITLE=ESTs BE107286 calmodulin regulated spectrin-associated protein 1-like 1 Camsap1l1 289400 NM_001134503 0005515 // protein binding // not recorded 1397202_at BF283204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283204 /DB_XREF=gi:11214274 /DB_XREF=EST447795 /CLONE=RGIDY81 /FEA=EST /CNT=4 /TID=Rn.56016.1 /TIER=ConsEnd /STK=1 /UG=Rn.56016 /UG_TITLE=ESTs BF283204 1397203_at BE105398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105398 /DB_XREF=gi:8497500 /DB_XREF=UI-R-BO1-asn-c-10-0-UI.s1 /CLONE=UI-R-BO1-asn-c-10-0-UI /FEA=EST /CNT=4 /TID=Rn.48995.1 /TIER=ConsEnd /STK=1 /UG=Rn.48995 /UG_TITLE=ESTs, Weakly similar to serinethreonine kinase (Caenorhabditis elegans) (C.elegans) BE105398 PRP4 pre-mRNA processing factor 4 homolog B (yeast) Prpf4b 291078 NM_001011923 0006397 // mRNA processing // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation /// 0005694 // chromosome // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1397204_s_at BM385125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385125 /DB_XREF=gi:18185178 /DB_XREF=UI-R-CN1-cjm-d-24-0-UI.s2 /CLONE=UI-R-CN1-cjm-d-24-0-UI /FEA=EST /CNT=4 /TID=Rn.65706.1 /TIER=ConsEnd /STK=1 /UG=Rn.65706 /UG_TITLE=ESTs BM385125 1397205_at BI288203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288203 /DB_XREF=gi:14944557 /DB_XREF=UI-R-DK0-ccy-b-02-0-UI.s1 /CLONE=UI-R-DK0-ccy-b-02-0-UI /FEA=EST /CNT=4 /TID=Rn.53844.1 /TIER=ConsEnd /STK=1 /UG=Rn.53844 /UG_TITLE=ESTs BI288203 dehydrogenase/reductase (SDR family) member 7 Dhrs7 299131 NM_001013098 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1397206_at AI548120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548120 /DB_XREF=gi:4465608 /DB_XREF=UI-R-C3-sm-e-10-0-UI.s1 /CLONE=UI-R-C3-sm-e-10-0-UI /FEA=EST /CNT=4 /TID=Rn.43980.1 /TIER=ConsEnd /STK=1 /UG=Rn.43980 /UG_TITLE=ESTs AI548120 1397207_at AI171260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171260 /DB_XREF=gi:3711300 /DB_XREF=EST217215 /CLONE=RMUBI26 /FEA=EST /CNT=4 /TID=Rn.38347.1 /TIER=ConsEnd /STK=1 /UG=Rn.38347 /UG_TITLE=ESTs, Moderately similar to T46403 hypothetical protein DKFZp434I0721.1 (H.sapiens) AI171260 OTU domain containing 4 Otud4 307774 NM_001191700 /// XM_001074219 /// XM_226388 0005515 // protein binding // not recorded 1397208_at AI409411 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409411 /DB_XREF=gi:4252915 /DB_XREF=EST237703 /CLONE=RKIDV93 /FEA=EST /CNT=4 /TID=Rn.43617.1 /TIER=ConsEnd /STK=1 /UG=Rn.43617 /UG_TITLE=ESTs AI409411 1397209_at BE107268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107268 /DB_XREF=gi:8499373 /DB_XREF=UI-R-BS1-ayr-h-01-0-UI.s1 /CLONE=UI-R-BS1-ayr-h-01-0-UI /FEA=EST /CNT=4 /TID=Rn.48947.1 /TIER=ConsEnd /STK=1 /UG=Rn.48947 /UG_TITLE=ESTs BE107268 similar to Hypothetical protein MGC59495 RGD1565712 361541 NM_001127579 1397210_at BF396902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396902 /DB_XREF=gi:11381885 /DB_XREF=UI-R-BS2-bew-e-04-0-UI.s1 /CLONE=UI-R-BS2-bew-e-04-0-UI /FEA=EST /CNT=4 /TID=Rn.63835.1 /TIER=ConsEnd /STK=1 /UG=Rn.63835 /UG_TITLE=ESTs BF396902 1397211_at AA874782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA874782 /DB_XREF=gi:4230667 /DB_XREF=UI-R-E0-bw-e-03-0-UI.s1 /CLONE=UI-R-E0-bw-e-03-0-UI /FEA=EST /CNT=4 /TID=Rn.63942.1 /TIER=ConsEnd /STK=1 /UG=Rn.63942 /UG_TITLE=ESTs, Moderately similar to growth factor receptor binding protein Grb10 (M.musculus) AA874782 growth factor receptor bound protein 10 Grb10 498416 NM_001109093 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from sequence or structural similarity /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // not recorded /// 0030949 // positive regulation of vascular endothelial growth factor receptor signaling pathway // inferred from sequence or structural similarity /// 0042326 // negative regulation of phosphorylation // not recorded /// 0046325 // negative regulation of glucose import // not recorded /// 0046627 // negative regulation of insulin receptor signaling pathway // not recorded /// 0048009 // insulin-like growth factor receptor signaling pathway // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0005070 // SH3/SH2 adaptor activity // not recorded /// 0005158 // insulin receptor binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1397212_at AW534279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534279 /DB_XREF=gi:7176693 /DB_XREF=UI-R-BS0-anu-d-08-0-UI.s1 /CLONE=UI-R-BS0-anu-d-08-0-UI /FEA=EST /CNT=4 /TID=Rn.48301.1 /TIER=ConsEnd /STK=1 /UG=Rn.48301 /UG_TITLE=ESTs AW534279 1397213_at AI169412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169412 /DB_XREF=gi:3705720 /DB_XREF=EST215262 /CLONE=RKIBS08 /FEA=EST /CNT=4 /TID=Rn.55988.1 /TIER=ConsEnd /STK=1 /UG=Rn.55988 /UG_TITLE=ESTs AI169412 1397214_at BF288533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288533 /DB_XREF=gi:11219603 /DB_XREF=EST453124 /CLONE=RGIGU70 /FEA=EST /CNT=4 /TID=Rn.55613.1 /TIER=ConsEnd /STK=1 /UG=Rn.55613 /UG_TITLE=ESTs BF288533 1397215_at BF393080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393080 /DB_XREF=gi:11377940 /DB_XREF=UI-R-CA0-bgu-c-06-0-UI.s1 /CLONE=UI-R-CA0-bgu-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.50084.1 /TIER=ConsEnd /STK=1 /UG=Rn.50084 /UG_TITLE=ESTs BF393080 1397216_at BF288606 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288606 /DB_XREF=gi:11219676 /DB_XREF=EST453197 /CLONE=RGIGV41 /FEA=EST /CNT=4 /TID=Rn.55627.1 /TIER=ConsEnd /STK=1 /UG=Rn.55627 /UG_TITLE=ESTs, Weakly similar to TC17 RAT TRANSCRIPTION FACTOR 17 (R.norvegicus) BF288606 rCG37858-like LOC100366030 100366030 NM_001177909 /// XM_002724932 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation 1397217_at BF408757 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408757 /DB_XREF=gi:11396732 /DB_XREF=UI-R-BT1-bnf-h-08-0-UI.s1 /CLONE=UI-R-BT1-bnf-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.63971.1 /TIER=ConsEnd /STK=1 /UG=Rn.63971 /UG_TITLE=ESTs BF408757 1397218_at BF420803 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420803 /DB_XREF=gi:11408792 /DB_XREF=UI-R-BJ2-bqa-d-06-0-UI.s1 /CLONE=UI-R-BJ2-bqa-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.64275.1 /TIER=ConsEnd /STK=1 /UG=Rn.64275 /UG_TITLE=ESTs BF420803 1397219_at AW921479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921479 /DB_XREF=gi:8087303 /DB_XREF=EST352783 /CLONE=RGIHX55 /FEA=EST /CNT=4 /TID=Rn.55957.1 /TIER=ConsEnd /STK=1 /UG=Rn.55957 /UG_TITLE=ESTs AW921479 1397220_at AW534601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534601 /DB_XREF=gi:7177015 /DB_XREF=UI-R-C4-alt-e-08-0-UI.s1 /CLONE=UI-R-C4-alt-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.72755.1 /TIER=ConsEnd /STK=1 /UG=Rn.72755 /UG_TITLE=ESTs AW534601 1397221_s_at BE108106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108106 /DB_XREF=gi:8500211 /DB_XREF=UI-R-CA0-axa-e-02-0-UI.s1 /CLONE=UI-R-CA0-axa-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.57982.1 /TIER=ConsEnd /STK=1 /UG=Rn.57982 /UG_TITLE=ESTs BE108106 Fas (TNF receptor superfamily, member 6) Fas 246097 NM_139194 0001666 // response to hypoxia // inferred from expression pattern /// 0002377 // immunoglobulin production // inferred from electronic annotation /// 0002377 // immunoglobulin production // not recorded /// 0003014 // renal system process // inferred from electronic annotation /// 0003014 // renal system process // not recorded /// 0006915 // apoptosis // not recorded /// 0006915 // apoptosis // traceable author statement /// 0006915 // apoptosis // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from expression pattern /// 0006924 // activation-induced cell death of T cells // inferred from electronic annotation /// 0006924 // activation-induced cell death of T cells // not recorded /// 0006925 // inflammatory cell apoptosis // inferred from electronic annotation /// 0006925 // inflammatory cell apoptosis // not recorded /// 0006927 // transformed cell apoptosis // inferred from electronic annotation /// 0006927 // transformed cell apoptosis // not recorded /// 0006955 // immune response // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0008624 // induction of apoptosis by extracellular signals // inferred from mutant phenotype /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0008624 // induction of apoptosis by extracellular signals // inferred from electronic annotation /// 0008625 // induction of apoptosis via death domain receptors // inferred from expression pattern /// 0008625 // induction of apoptosis via death domain receptors // not recorded /// 0008625 // induction of apoptosis via death domain receptors // inferred from electronic annotation /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0009636 // response to toxin // inferred from expression pattern /// 0009636 // response to toxin // not recorded /// 0009636 // response to toxin // inferred from electronic annotation /// 0010035 // response to inorganic substance // inferred from expression pattern /// 0010467 // gene expression // inferred from electronic annotation /// 0010467 // gene expression // not recorded /// 0010940 // positive regulation of necrotic cell death // not recorded /// 0019724 // B cell mediated immunity // inferred from electronic annotation /// 0019724 // B cell mediated immunity // not recorded /// 0031104 // dendrite regeneration // inferred from mutant phenotype /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0034097 // response to cytokine stimulus // inferred from expression pattern /// 0042127 // regulation of cell proliferation // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0042698 // ovulation cycle // inferred from expression pattern /// 0043029 // T cell homeostasis // not recorded /// 0043029 // T cell homeostasis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043434 // response to peptide hormone stimulus // inferred from expression pattern /// 0043627 // response to estrogen stimulus // inferred from expression pattern /// 0045060 // negative thymic T cell selection // inferred from electronic annotation /// 0045060 // negative thymic T cell selection // not recorded /// 0045619 // regulation of lymphocyte differentiation // inferred from electronic annotation /// 0045619 // regulation of lymphocyte differentiation // not recorded /// 0045637 // regulation of myeloid cell differentiation // inferred from electronic annotation /// 0045637 // regulation of myeloid cell differentiation // not recorded /// 0048536 // spleen development // inferred from electronic annotation /// 0048536 // spleen development // not recorded /// 0050869 // negative regulation of B cell activation // inferred from electronic annotation /// 0050869 // negative regulation of B cell activation // not recorded /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from electronic annotation /// 0051384 // response to glucocorticoid stimulus // not recorded /// 0051789 // response to protein stimulus // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded /// 0070848 // response to growth factor stimulus // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005886 // plasma membrane // not recorded /// 0005901 // caveola // inferred from expression pattern /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031264 // death-inducing signaling complex // not recorded /// 0031265 // CD95 death-inducing signaling complex // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0004872 // receptor activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // non-traceable author statement /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0005031 // tumor necrosis factor receptor activity // inferred from mutant phenotype /// 0005031 // tumor necrosis factor receptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019900 // kinase binding // not recorded /// 0042802 // identical protein binding // not recorded 1397222_at AW528473 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528473 /DB_XREF=gi:7170887 /DB_XREF=UI-R-BO1-ajl-g-08-0-UI.s1 /CLONE=UI-R-BO1-ajl-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.48210.1 /TIER=ConsEnd /STK=1 /UG=Rn.48210 /UG_TITLE=ESTs AW528473 1397223_at AI231513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231513 /DB_XREF=gi:3815393 /DB_XREF=EST228201 /CLONE=REMDL16 /FEA=EST /CNT=4 /TID=Rn.55425.1 /TIER=ConsEnd /STK=1 /UG=Rn.55425 /UG_TITLE=ESTs AI231513 1397224_at AW534277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534277 /DB_XREF=gi:7176691 /DB_XREF=UI-R-BS0-anu-d-06-0-UI.s1 /CLONE=UI-R-BS0-anu-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.38845.1 /TIER=ConsEnd /STK=1 /UG=Rn.38845 /UG_TITLE=ESTs AW534277 1397225_at AA875647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875647 /DB_XREF=gi:4231524 /DB_XREF=UI-R-E0-ct-g-06-0-UI.s1 /CLONE=UI-R-E0-ct-g-06-0-UI /FEA=EST /CNT=4 /TID=Rn.32252.1 /TIER=ConsEnd /STK=1 /UG=Rn.32252 /UG_TITLE=ESTs AA875647 1397226_at AI100942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI100942 /DB_XREF=gi:3705955 /DB_XREF=EST210231 /CLONE=RBRBD25 /FEA=EST /CNT=4 /TID=Rn.43956.1 /TIER=ConsEnd /STK=1 /UG=Rn.43956 /UG_TITLE=ESTs AI100942 similar to mKIAA0716 protein RGD1561724 366608 XR_085852 /// XR_086276 1397227_at BE120895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120895 /DB_XREF=gi:8513000 /DB_XREF=UI-R-BS1-azt-g-04-0-UI.s1 /CLONE=UI-R-BS1-azt-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.45854.1 /TIER=ConsEnd /STK=1 /UG=Rn.45854 /UG_TITLE=ESTs BE120895 transmembrane protein 35 Tmem35 308134 NM_001001799 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1397228_at AI103063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103063 /DB_XREF=gi:3707663 /DB_XREF=EST212352 /CLONE=REMBW72 /FEA=EST /CNT=4 /TID=Rn.43585.1 /TIER=ConsEnd /STK=1 /UG=Rn.43585 /UG_TITLE=ESTs AI103063 1397229_at BF565781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565781 /DB_XREF=gi:11675511 /DB_XREF=UI-R-C4-akz-e-11-0-UI.r1 /CLONE=UI-R-C4-akz-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.55724.1 /TIER=ConsEnd /STK=1 /UG=Rn.55724 /UG_TITLE=ESTs BF565781 1397230_at BE096562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096562 /DB_XREF=gi:8487493 /DB_XREF=UI-R-BU0-aph-f-02-0-UI.s1 /CLONE=UI-R-BU0-aph-f-02-0-UI /FEA=EST /CNT=4 /TID=Rn.41658.1 /TIER=ConsEnd /STK=1 /UG=Rn.41658 /UG_TITLE=ESTs BE096562 1397231_at AW530092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530092 /DB_XREF=gi:7172506 /DB_XREF=UI-R-C4-ald-e-02-0-UI.s1 /CLONE=UI-R-C4-ald-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.47377.1 /TIER=ConsEnd /STK=1 /UG=Rn.47377 /UG_TITLE=ESTs AW530092 Shadow of prion protein homolog (zebrafish) Sprn 541462 NM_001031845 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 1397232_at AW529295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529295 /DB_XREF=gi:7171709 /DB_XREF=UI-R-BT1-akm-c-10-0-UI.s1 /CLONE=UI-R-BT1-akm-c-10-0-UI /FEA=EST /CNT=6 /TID=Rn.47148.1 /TIER=ConsEnd /STK=1 /UG=Rn.47148 /UG_TITLE=ESTs AW529295 leucine rich repeat neuronal 1 Lrrn1 500280 NM_001037363 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1397233_at AW529479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529479 /DB_XREF=gi:7171893 /DB_XREF=UI-R-BT1-akk-g-06-0-UI.s1 /CLONE=UI-R-BT1-akk-g-06-0-UI /FEA=EST /CNT=5 /TID=Rn.47214.1 /TIER=ConsEnd /STK=1 /UG=Rn.47214 /UG_TITLE=ESTs AW529479 doublecortin-like kinase 3 Dclk3 316023 NM_001191800 /// XM_001076419 /// XM_236661 0006468 // protein phosphorylation // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1397234_at AI598507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598507 /DB_XREF=gi:4607541 /DB_XREF=EST250196 /CLONE=REMDR79 /FEA=EST /CNT=5 /TID=Rn.64293.1 /TIER=ConsEnd /STK=1 /UG=Rn.64293 /UG_TITLE=ESTs AI598507 G patch domain containing 1 Gpatch1 292810 NM_001106246 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation 1397235_at AA963984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA963984 /DB_XREF=gi:4278860 /DB_XREF=UI-R-C0-gs-e-03-0-UI.s1 /CLONE=UI-R-C0-gs-e-03-0-UI /FEA=EST /CNT=4 /TID=Rn.64057.1 /TIER=ConsEnd /STK=1 /UG=Rn.64057 /UG_TITLE=ESTs AA963984 1397236_at AI453924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI453924 /DB_XREF=gi:4290128 /DB_XREF=UI-R-BT0-pu-g-06-0-UI.s1 /CLONE=UI-R-BT0-pu-g-06-0-UI /FEA=EST /CNT=4 /TID=Rn.63841.1 /TIER=ConsEnd /STK=1 /UG=Rn.63841 /UG_TITLE=ESTs AI453924 1397237_at AW534329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534329 /DB_XREF=gi:7176743 /DB_XREF=UI-R-C4-alo-b-01-0-UI.s1 /CLONE=UI-R-C4-alo-b-01-0-UI /FEA=EST /CNT=4 /TID=Rn.48231.1 /TIER=ConsEnd /STK=1 /UG=Rn.48231 /UG_TITLE=ESTs AW534329 ribosomal protein L28 Rpl28 64638 NM_022697 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1397238_at AW524239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524239 /DB_XREF=gi:7166624 /DB_XREF=UI-R-BO0-aig-a-07-0-UI.s1 /CLONE=UI-R-BO0-aig-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.74055.1 /TIER=ConsEnd /STK=1 /UG=Rn.74055 /UG_TITLE=ESTs AW524239 1397239_at AW522354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522354 /DB_XREF=gi:7164739 /DB_XREF=UI-R-BO0-ahw-b-02-0-UI.s1 /CLONE=UI-R-BO0-ahw-b-02-0-UI /FEA=EST /CNT=4 /TID=Rn.44890.1 /TIER=ConsEnd /STK=1 /UG=Rn.44890 /UG_TITLE=ESTs AW522354 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0051020 // GTPase binding // inferred from electronic annotation 1397240_at AA926273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926273 /DB_XREF=gi:4237464 /DB_XREF=UI-R-A1-ev-c-06-0-UI.s1 /CLONE=UI-R-A1-ev-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.34349.1 /TIER=ConsEnd /STK=1 /UG=Rn.34349 /UG_TITLE=ESTs AA926273 1397241_at BE101570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101570 /DB_XREF=gi:8493668 /DB_XREF=UI-R-BO1-apr-e-05-0-UI.s1 /CLONE=UI-R-BO1-apr-e-05-0-UI /FEA=EST /CNT=4 /TID=Rn.60185.1 /TIER=ConsEnd /STK=1 /UG=Rn.60185 /UG_TITLE=ESTs BE101570 similar to hypothetical protein MGC47816 RGD1306880 313553 XM_001073980 /// XM_002729535 0006464 // protein modification process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1397242_at BG372771 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372771 /DB_XREF=gi:13269308 /DB_XREF=UI-R-CV1-brt-e-02-0-UI.s1 /CLONE=UI-R-CV1-brt-e-02-0-UI /FEA=EST /CNT=4 /TID=Rn.79584.1 /TIER=ConsEnd /STK=1 /UG=Rn.79584 /UG_TITLE=ESTs BG372771 kelch-like 38 (Drosophila) Klhl38 314996 NM_001025008 0005515 // protein binding // inferred from electronic annotation 1397243_at AA850491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850491 /DB_XREF=gi:2938031 /DB_XREF=EST193258 /CLONE=ROVAG34 /FEA=EST /CNT=4 /TID=Rn.55536.1 /TIER=ConsEnd /STK=1 /UG=Rn.55536 /UG_TITLE=ESTs AA850491 inhibitor of growth family, member 2 Ing2 290744 NM_001106083 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0016580 // Sin3 complex // inferred from electronic annotation /// 0016580 // Sin3 complex // not recorded /// 0016602 // CCAAT-binding factor complex // inferred from electronic annotation /// 0016602 // CCAAT-binding factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0032403 // protein complex binding // inferred from electronic annotation /// 0032403 // protein complex binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1397244_at AI535406 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535406 /DB_XREF=gi:4449541 /DB_XREF=UI-R-C3-si-f-06-0-UI.s1 /CLONE=UI-R-C3-si-f-06-0-UI /FEA=EST /CNT=4 /TID=Rn.34819.1 /TIER=ConsEnd /STK=1 /UG=Rn.34819 /UG_TITLE=ESTs AI535406 1397245_at BE095607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095607 /DB_XREF=gi:8486538 /DB_XREF=UI-R-BO1-apo-a-07-0-UI.s1 /CLONE=UI-R-BO1-apo-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.53878.1 /TIER=ConsEnd /STK=1 /UG=Rn.53878 /UG_TITLE=ESTs, Moderately similar to R23A MOUSE UV EXCISION REPAIR PROTEIN PROTEIN RAD23 HOMOLOG A (M.musculus) BE095607 RAD23 homolog A (S. cerevisiae) Rad23a 361381 NM_001013190 0006289 // nucleotide-excision repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003684 // damaged DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1397246_at BE102996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102996 /DB_XREF=gi:8495095 /DB_XREF=UI-R-BT1-aqr-a-10-0-UI.s1 /CLONE=UI-R-BT1-aqr-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.44909.1 /TIER=ConsEnd /STK=1 /UG=Rn.44909 /UG_TITLE=ESTs BE102996 neurotrophic tyrosine kinase, receptor, type 2 Ntrk2 25054 NM_001163168 /// NM_001163169 /// NM_012731 0001570 // vasculogenesis // inferred from electronic annotation /// 0001570 // vasculogenesis // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007190 // activation of adenylate cyclase activity // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007631 // feeding behavior // inferred from electronic annotation /// 0007631 // feeding behavior // not recorded /// 0014047 // glutamate secretion // inferred from electronic annotation /// 0014047 // glutamate secretion // not recorded /// 0019222 // regulation of metabolic process // inferred from electronic annotation /// 0019222 // regulation of metabolic process // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0031547 // brain-derived neurotrophic factor receptor signaling pathway // inferred from mutant phenotype /// 0042490 // mechanoreceptor differentiation // inferred from electronic annotation /// 0042490 // mechanoreceptor differentiation // not recorded /// 0046548 // retinal rod cell development // inferred from electronic annotation /// 0046548 // retinal rod cell development // not recorded /// 0046777 // protein autophosphorylation // inferred from mutant phenotype /// 0046928 // regulation of neurotransmitter secretion // inferred from direct assay /// 0050773 // regulation of dendrite development // inferred from mutant phenotype /// 0051968 // positive regulation of synaptic transmission, glutamatergic // inferred from mutant phenotype 0000139 // Golgi membrane // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from electronic annotation /// 0043195 // terminal button // not recorded /// 0043197 // dendritic spine // inferred from direct assay /// 0043679 // axon terminus // inferred from direct assay /// 0048786 // presynaptic active zone // inferred from direct assay /// 0060076 // excitatory synapse // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from mutant phenotype /// 0004872 // receptor activity // inferred from electronic annotation /// 0005030 // neurotrophin receptor activity // inferred from direct assay /// 0005030 // neurotrophin receptor activity // inferred from electronic annotation /// 0005030 // neurotrophin receptor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0048403 // brain-derived neurotrophic factor binding // inferred from direct assay /// 0048403 // brain-derived neurotrophic factor binding // inferred from mutant phenotype 1397247_at BI276505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276505 /DB_XREF=gi:14921473 /DB_XREF=UI-R-CX0-bwv-b-05-0-UI.s1 /CLONE=UI-R-CX0-bwv-b-05-0-UI /FEA=EST /CNT=4 /TID=Rn.56125.1 /TIER=ConsEnd /STK=1 /UG=Rn.56125 /UG_TITLE=ESTs BI276505 CUB domain containing protein 1 Cdcp1 301082 NM_001106869 1397248_at AI547500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547500 /DB_XREF=gi:4464988 /DB_XREF=UI-R-C3-sl-f-12-0-UI.s1 /CLONE=UI-R-C3-sl-f-12-0-UI /FEA=EST /CNT=4 /TID=Rn.34726.1 /TIER=ConsEnd /STK=1 /UG=Rn.34726 /UG_TITLE=ESTs AI547500 1397249_at BF282722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282722 /DB_XREF=gi:11213792 /DB_XREF=EST447313 /CLONE=RGIDS18 /FEA=EST /CNT=3 /TID=Rn.28328.1 /TIER=ConsEnd /STK=1 /UG=Rn.28328 /UG_TITLE=ESTs BF282722 1397250_at AA850799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850799 /DB_XREF=gi:2938339 /DB_XREF=EST193567 /CLONE=ROVAK89 /FEA=EST /CNT=3 /TID=Rn.55560.1 /TIER=ConsEnd /STK=1 /UG=Rn.55560 /UG_TITLE=ESTs AA850799 1397251_at BF389812 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389812 /DB_XREF=gi:11374648 /DB_XREF=UI-R-BS2-bdp-a-07-0-UI.s1 /CLONE=UI-R-BS2-bdp-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.57020.1 /TIER=ConsEnd /STK=1 /UG=Rn.57020 /UG_TITLE=ESTs BF389812 1397252_at BF286874 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF286874 /DB_XREF=gi:11217944 /DB_XREF=EST451465 /CLONE=RGIFT83 /FEA=EST /CNT=3 /TID=Rn.55387.1 /TIER=ConsEnd /STK=1 /UG=Rn.55387 /UG_TITLE=ESTs BF286874 1397253_at AI178349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178349 /DB_XREF=gi:3728987 /DB_XREF=EST222018 /CLONE=RPLCP40 /FEA=EST /CNT=3 /TID=Rn.29216.1 /TIER=ConsEnd /STK=1 /UG=Rn.29216 /UG_TITLE=ESTs, Moderately similar to A56559 enhancer-trap-locus-1 protein - mouse (M.musculus) AI178349 1397254_at AI501776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501776 /DB_XREF=gi:4399627 /DB_XREF=UI-R-A0-bb-d-10-0-UI.s1 /CLONE=UI-R-A0-bb-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.35558.1 /TIER=ConsEnd /STK=1 /UG=Rn.35558 /UG_TITLE=ESTs AI501776 Hydroxysteroid dehydrogenase like 1 Hsdl1 361418 NM_001024896 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1397255_at AW533685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533685 /DB_XREF=gi:7176099 /DB_XREF=UI-R-BU0-anj-h-02-0-UI.s1 /CLONE=UI-R-BU0-anj-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.72779.1 /TIER=ConsEnd /STK=1 /UG=Rn.72779 /UG_TITLE=ESTs AW533685 coiled-coil domain containing 86 Ccdc86 293738 NM_001006974 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 1397256_at BF284577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284577 /DB_XREF=gi:11215647 /DB_XREF=EST449168 /CLONE=RGIES41 /FEA=EST /CNT=3 /TID=Rn.55279.1 /TIER=ConsEnd /STK=1 /UG=Rn.55279 /UG_TITLE=ESTs BF284577 1397257_at BE108093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108093 /DB_XREF=gi:8500198 /DB_XREF=UI-R-CA0-axa-c-12-0-UI.s1 /CLONE=UI-R-CA0-axa-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.51412.1 /TIER=ConsEnd /STK=1 /UG=Rn.51412 /UG_TITLE=ESTs BE108093 1397258_at BM383140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383140 /DB_XREF=gi:18183193 /DB_XREF=UI-R-DS0-cje-h-10-0-UI.s1 /CLONE=UI-R-DS0-cje-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.81289.1 /TIER=ConsEnd /STK=1 /UG=Rn.81289 /UG_TITLE=ESTs BM383140 1397259_at BF291133 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291133 /DB_XREF=gi:11222203 /DB_XREF=EST455724 /CLONE=RGIIJ18 /FEA=EST /CNT=3 /TID=Rn.56042.1 /TIER=ConsEnd /STK=1 /UG=Rn.56042 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) BF291133 family with sequence similarity 126, member B Fam126b 316415 NM_001025710 0005622 // intracellular // not recorded 1397260_at AA850079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850079 /DB_XREF=gi:4131789 /DB_XREF=EST192846 /CLONE=ROVAB58 /FEA=EST /CNT=3 /TID=Rn.55524.1 /TIER=ConsEnd /STK=1 /UG=Rn.55524 /UG_TITLE=ESTs AA850079 1397261_at AI547508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547508 /DB_XREF=gi:4464996 /DB_XREF=UI-R-C3-sl-g-09-0-UI.s1 /CLONE=UI-R-C3-sl-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.43471.1 /TIER=ConsEnd /STK=1 /UG=Rn.43471 /UG_TITLE=ESTs AI547508 1397262_at AI144961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144961 /DB_XREF=gi:3666760 /DB_XREF=UI-R-BT0-pp-h-11-0-UI.s1 /CLONE=UI-R-BT0-pp-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.27751.1 /TIER=ConsEnd /STK=1 /UG=Rn.27751 /UG_TITLE=ESTs AI144961 1397263_at AI045741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045741 /DB_XREF=gi:3292560 /DB_XREF=UI-R-C1-jy-g-12-0-UI.s2 /CLONE=UI-R-C1-jy-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.34352.1 /TIER=ConsEnd /STK=1 /UG=Rn.34352 /UG_TITLE=ESTs AI045741 1397264_at AA859819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859819 /DB_XREF=gi:4230359 /DB_XREF=UI-R-E0-cc-f-01-0-UI.s1 /CLONE=UI-R-E0-cc-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.32144.1 /TIER=ConsEnd /STK=1 /UG=Rn.32144 /UG_TITLE=ESTs AA859819 1397265_at AW529600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529600 /DB_XREF=gi:7172014 /DB_XREF=UI-R-BT1-akn-b-06-0-UI.s1 /CLONE=UI-R-BT1-akn-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.72924.1 /TIER=ConsEnd /STK=1 /UG=Rn.72924 /UG_TITLE=ESTs AW529600 1397266_at AA946437 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA946437 /DB_XREF=gi:4132790 /DB_XREF=EST201936 /CLONE=ROVAR15 /FEA=EST /CNT=3 /TID=Rn.55591.1 /TIER=ConsEnd /STK=1 /UG=Rn.55591 /UG_TITLE=ESTs AA946437 1397267_at BF410275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410275 /DB_XREF=gi:11398250 /DB_XREF=UI-R-CA1-bjv-f-01-0-UI.s1 /CLONE=UI-R-CA1-bjv-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.64235.1 /TIER=ConsEnd /STK=1 /UG=Rn.64235 /UG_TITLE=ESTs BF410275 RIMS binding protein 2 Rimbp2 266780 NM_001100488 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction 1397268_at BI295515 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295515 /DB_XREF=gi:14959030 /DB_XREF=UI-R-DK0-cev-c-05-0-UI.s1 /CLONE=UI-R-DK0-cev-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.79713.1 /TIER=ConsEnd /STK=1 /UG=Rn.79713 /UG_TITLE=ESTs BI295515 similar to solute carrier family 17 (sodium phosphate), member 4 LOC684568 684568 XM_001071021 0055085 // transmembrane transport // inferred from electronic annotation 1397269_at AI011772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011772 /DB_XREF=gi:4133496 /DB_XREF=EST206223 /CLONE=ROVAZ96 /FEA=EST /CNT=3 /TID=Rn.55625.1 /TIER=ConsEnd /STK=1 /UG=Rn.55625 /UG_TITLE=ESTs AI011772 1397270_at AI502769 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502769 /DB_XREF=gi:4400620 /DB_XREF=UI-R-C1-lc-c-01-0-UI.s1 /CLONE=UI-R-C1-lc-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.35482.1 /TIER=ConsEnd /STK=1 /UG=Rn.35482 /UG_TITLE=ESTs AI502769 1397271_at AA851313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851313 /DB_XREF=gi:2938853 /DB_XREF=EST194081 /CLONE=RPLAF12 /FEA=EST /CNT=3 /TID=Rn.55474.1 /TIER=ConsEnd /STK=1 /UG=Rn.55474 /UG_TITLE=ESTs AA851313 1397272_at BI297130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297130 /DB_XREF=gi:14962231 /DB_XREF=UI-R-DK0-cdt-f-12-0-UI.s1 /CLONE=UI-R-DK0-cdt-f-12-0-UI /FEA=EST /CNT=3 /TID=Rn.76729.1 /TIER=ConsEnd /STK=1 /UG=Rn.76729 /UG_TITLE=ESTs BI297130 kinesin family member 13A Kif13a 308173 NM_001107462 0007018 // microtubule-based movement // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1397273_at AW520906 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520906 /DB_XREF=gi:7163284 /DB_XREF=UI-R-BJ0p-age-g-11-0-UI.s1 /CLONE=UI-R-BJ0p-age-g-11-0-UI /FEA=EST /CNT=3 /TID=Rn.72990.1 /TIER=ConsEnd /STK=1 /UG=Rn.72990 /UG_TITLE=ESTs AW520906 LIM domain binding 3 Ldb3 498587 NM_001110490 0005856 // cytoskeleton // not recorded /// 0030018 // Z disc // not recorded 0005080 // protein kinase C binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397274_at AI555780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555780 /DB_XREF=gi:4488143 /DB_XREF=UI-R-C2p-qs-h-11-0-UI.s1 /CLONE=UI-R-C2p-qs-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.38740.1 /TIER=ConsEnd /STK=1 /UG=Rn.38740 /UG_TITLE=ESTs AI555780 1397275_at BF386708 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386708 /DB_XREF=gi:11371532 /DB_XREF=UI-R-CA1-bbg-e-09-0-UI.s1 /CLONE=UI-R-CA1-bbg-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.61568.1 /TIER=ConsEnd /STK=1 /UG=Rn.61568 /UG_TITLE=ESTs BF386708 1397276_at AA964918 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964918 /DB_XREF=gi:4279792 /DB_XREF=UI-R-C0-hb-g-04-0-UI.s1 /CLONE=UI-R-C0-hb-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.43437.1 /TIER=ConsEnd /STK=1 /UG=Rn.43437 /UG_TITLE=ESTs, Weakly similar to ARL2 RAT ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2 (R.norvegicus) AA964918 ADP-ribosylation factor-like 10 Arl10 306767 NM_207165 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1397277_at AW920086 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920086 /DB_XREF=gi:8085998 /DB_XREF=EST351494 /CLONE=RGIGS26 /FEA=EST /CNT=3 /TID=Rn.55541.1 /TIER=ConsEnd /STK=1 /UG=Rn.55541 /UG_TITLE=ESTs AW920086 1397278_at BE113877 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113877 /DB_XREF=gi:8505982 /DB_XREF=UI-R-CA0-axe-e-02-0-UI.s1 /CLONE=UI-R-CA0-axe-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.66302.1 /TIER=ConsEnd /STK=1 /UG=Rn.66302 /UG_TITLE=ESTs BE113877 1397279_at AW920727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920727 /DB_XREF=gi:8086541 /DB_XREF=EST352031 /CLONE=RGIHB54 /FEA=EST /CNT=3 /TID=Rn.55723.1 /TIER=ConsEnd /STK=1 /UG=Rn.55723 /UG_TITLE=ESTs AW920727 integrin, beta 5 Itgb5 257645 NM_147139 0006936 // muscle contraction // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0005925 // focal adhesion // not recorded /// 0008305 // integrin complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031252 // cell leading edge // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1397280_at BE119630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119630 /DB_XREF=gi:8511735 /DB_XREF=UI-R-CA0-baz-b-07-0-UI.s1 /CLONE=UI-R-CA0-baz-b-07-0-UI /FEA=EST /CNT=3 /TID=Rn.53297.1 /TIER=ConsEnd /STK=1 /UG=Rn.53297 /UG_TITLE=ESTs BE119630 1397281_at AI235881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235881 /DB_XREF=gi:3829387 /DB_XREF=EST232443 /CLONE=ROVCY16 /FEA=EST /CNT=3 /TID=Rn.64232.1 /TIER=ConsEnd /STK=1 /UG=Rn.64232 /UG_TITLE=ESTs AI235881 1397282_at AW531746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531746 /DB_XREF=gi:7174160 /DB_XREF=UI-R-C4-alk-f-02-0-UI.s1 /CLONE=UI-R-C4-alk-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.76304.1 /TIER=ConsEnd /STK=1 /UG=Rn.76304 /UG_TITLE=ESTs AW531746 1397283_at AI176618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176618 /DB_XREF=gi:3727256 /DB_XREF=EST220207 /CLONE=ROVBU61 /FEA=EST /CNT=3 /TID=Rn.55652.1 /TIER=ConsEnd /STK=1 /UG=Rn.55652 /UG_TITLE=ESTs AI176618 1397284_at BF418279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418279 /DB_XREF=gi:11406268 /DB_XREF=UI-R-CA0-bmd-b-01-0-UI.s1 /CLONE=UI-R-CA0-bmd-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.72297.1 /TIER=ConsEnd /STK=1 /UG=Rn.72297 /UG_TITLE=ESTs, Weakly similar to ZF94_RAT ZINC FINGER PROTEIN 94 (ZFP-94) (ZINC FINGER PROTEIN Y1) (RLZF-Y) (R.norvegicus) BF418279 zinc finger protein 444 Zfp444 292569 NM_001169143 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397285_at BM385916 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385916 /DB_XREF=gi:18185969 /DB_XREF=UI-R-DN1-ckf-i-17-0-UI.s1 /CLONE=UI-R-DN1-ckf-i-17-0-UI /FEA=EST /CNT=3 /TID=Rn.56052.1 /TIER=ConsEnd /STK=1 /UG=Rn.56052 /UG_TITLE=ESTs BM385916 1397286_at AW435211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435211 /DB_XREF=gi:6966518 /DB_XREF=UI-R-BJ0p-afj-g-09-0-UI.s1 /CLONE=UI-R-BJ0p-afj-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.27439.1 /TIER=ConsEnd /STK=1 /UG=Rn.27439 /UG_TITLE=ESTs AW435211 1397287_at BF291148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291148 /DB_XREF=gi:11222218 /DB_XREF=EST455739 /CLONE=RGIIJ35 /FEA=EST /CNT=3 /TID=Rn.43440.1 /TIER=ConsEnd /STK=1 /UG=Rn.43440 /UG_TITLE=ESTs BF291148 similar to 4931417G12Rik protein RGD1565997 500294 NM_001109251 1397288_at BM390376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390376 /DB_XREF=gi:18190429 /DB_XREF=UI-R-CN1-cjq-f-15-0-UI.s1 /CLONE=UI-R-CN1-cjq-f-15-0-UI /FEA=EST /CNT=3 /TID=Rn.81248.1 /TIER=ConsEnd /STK=1 /UG=Rn.81248 /UG_TITLE=ESTs BM390376 1397289_at AI228245 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228245 /DB_XREF=gi:4135330 /DB_XREF=EST224940 /CLONE=RBRCS36 /FEA=EST /CNT=3 /TID=Rn.55332.1 /TIER=ConsEnd /STK=1 /UG=Rn.55332 /UG_TITLE=ESTs AI228245 1397290_at AI408310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408310 /DB_XREF=gi:4251814 /DB_XREF=EST236600 /CLONE=ROVEN07 /FEA=EST /CNT=3 /TID=Rn.38024.1 /TIER=ConsEnd /STK=1 /UG=Rn.38024 /UG_TITLE=ESTs AI408310 similar to KIAA0892 protein RGD1308759 290668 NM_001106077 0034088 // maintenance of mitotic sister chromatid cohesion // not recorded 0000785 // chromatin // not recorded /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0032116 // cohesin loading complex // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0047485 // protein N-terminus binding // not recorded 1397291_at AI535254 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535254 /DB_XREF=gi:4449389 /DB_XREF=UI-R-C3-st-e-03-0-UI.s1 /CLONE=UI-R-C3-st-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.59088.1 /TIER=ConsEnd /STK=1 /UG=Rn.59088 /UG_TITLE=ESTs AI535254 Similar to RIKEN cDNA 9030625A04 RGD1310185 313790 XM_001072262 /// XM_233749 1397292_at BF412804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412804 /DB_XREF=gi:11400793 /DB_XREF=UI-R-BT1-bnz-f-01-0-UI.s1 /CLONE=UI-R-BT1-bnz-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.72703.1 /TIER=ConsEnd /STK=1 /UG=Rn.72703 /UG_TITLE=ESTs BF412804 1397293_at AW530313 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530313 /DB_XREF=gi:7172727 /DB_XREF=UI-R-BU0-amv-b-06-0-UI.s1 /CLONE=UI-R-BU0-amv-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.47424.1 /TIER=ConsEnd /STK=1 /UG=Rn.47424 /UG_TITLE=ESTs AW530313 1397294_at AW529486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529486 /DB_XREF=gi:7171900 /DB_XREF=UI-R-BT1-akk-h-01-0-UI.s1 /CLONE=UI-R-BT1-akk-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.47215.1 /TIER=ConsEnd /STK=1 /UG=Rn.47215 /UG_TITLE=ESTs AW529486 1397295_at BF291108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291108 /DB_XREF=gi:11222178 /DB_XREF=EST455699 /CLONE=RGIII85 /FEA=EST /CNT=3 /TID=Rn.56036.1 /TIER=ConsEnd /STK=1 /UG=Rn.56036 /UG_TITLE=ESTs BF291108 1397296_at AI716498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716498 /DB_XREF=gi:5033751 /DB_XREF=UI-R-Y0-ach-g-09-0-UI.s1 /CLONE=UI-R-Y0-ach-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.63776.1 /TIER=ConsEnd /STK=1 /UG=Rn.63776 /UG_TITLE=ESTs AI716498 1397297_at AI176747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176747 /DB_XREF=gi:3727385 /DB_XREF=EST220341 /CLONE=ROVBW33 /FEA=EST /CNT=3 /TID=Rn.54185.1 /TIER=ConsEnd /STK=1 /UG=Rn.54185 /UG_TITLE=ESTs AI176747 1397298_at AI011647 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011647 /DB_XREF=gi:3225479 /DB_XREF=EST206098 /CLONE=ROVAX72 /FEA=EST /CNT=3 /TID=Rn.55617.1 /TIER=ConsEnd /STK=1 /UG=Rn.55617 /UG_TITLE=ESTs AI011647 1397299_at AW532232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532232 /DB_XREF=gi:7174646 /DB_XREF=UI-R-C4-all-a-06-0-UI.s1 /CLONE=UI-R-C4-all-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.56070.1 /TIER=ConsEnd /STK=1 /UG=Rn.56070 /UG_TITLE=ESTs AW532232 FERM and PDZ domain containing 1 Frmpd1 313244 NM_001107937 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1397300_at BG371544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371544 /DB_XREF=gi:13268081 /DB_XREF=UI-R-CW0-bvw-f-05-0-UI.s1 /CLONE=UI-R-CW0-bvw-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.42112.1 /TIER=ConsEnd /STK=1 /UG=Rn.42112 /UG_TITLE=ESTs BG371544 1397301_at BM386743 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386743 /DB_XREF=gi:18186801 /DB_XREF=UI-R-CN1-cjg-l-02-0-UI.s1 /CLONE=UI-R-CN1-cjg-l-02-0-UI /FEA=EST /CNT=3 /TID=Rn.43453.1 /TIER=ConsEnd /STK=1 /UG=Rn.43453 /UG_TITLE=ESTs BM386743 1397302_at BF543495 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF543495 /DB_XREF=gi:11634602 /DB_XREF=UI-R-C3-sz-g-08-0-UI.r1 /CLONE=UI-R-C3-sz-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.63822.1 /TIER=ConsEnd /STK=1 /UG=Rn.63822 /UG_TITLE=ESTs, Weakly similar to BS69_HUMAN ADENOVIRUS 5 E1A-BINDING PROTEIN (H.sapiens) BF543495 zinc finger, MYND domain containing 11 Zmynd11 291259 NM_203366 /// NM_203367 /// NM_203368 /// NM_203369 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397303_at AI178467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178467 /DB_XREF=gi:3729105 /DB_XREF=EST222141 /CLONE=RPLCR43 /FEA=EST /CNT=3 /TID=Rn.39408.1 /TIER=ConsEnd /STK=1 /UG=Rn.39408 /UG_TITLE=ESTs, Weakly similar to S12207 hypothetical protein (M.musculus) AI178467 1397304_at AW525366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525366 /DB_XREF=gi:7167751 /DB_XREF=UI-R-BJ0p-aiq-h-02-0-UI.s1 /CLONE=UI-R-BJ0p-aiq-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.42565.1 /TIER=ConsEnd /STK=1 /UG=Rn.42565 /UG_TITLE=ESTs AW525366 interferon gamma induced GTPase Igtp 303163 NM_001008765 0006184 // GTP catabolic process // not recorded 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003924 // GTPase activity // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0016817 // hydrolase activity, acting on acid anhydrides // inferred from electronic annotation 1397305_at BE110307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110307 /DB_XREF=gi:8502412 /DB_XREF=UI-R-CA0-axl-e-01-0-UI.s1 /CLONE=UI-R-CA0-axl-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.51868.1 /TIER=ConsEnd /STK=1 /UG=Rn.51868 /UG_TITLE=ESTs BE110307 Family with sequence similarity 116, member A Fam116a 306229 NM_001134467 1397306_at AI555202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555202 /DB_XREF=gi:4487565 /DB_XREF=UI-R-C2p-qu-a-11-0-UI.s1 /CLONE=UI-R-C2p-qu-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.38373.1 /TIER=ConsEnd /STK=1 /UG=Rn.38373 /UG_TITLE=ESTs AI555202 ninein (GSK3B interacting protein) Nin 299117 NM_001106737 0005813 // centrosome // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1397307_at BF555100 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555100 /DB_XREF=gi:11664830 /DB_XREF=UI-R-E0-co-b-04-0-UI.r1 /CLONE=UI-R-E0-co-b-04-0-UI /FEA=EST /CNT=3 /TID=Rn.40809.1 /TIER=ConsEnd /STK=1 /UG=Rn.40809 /UG_TITLE=ESTs BF555100 1397308_at BE119999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119999 /DB_XREF=gi:8512104 /DB_XREF=UI-R-CA0-bao-d-10-0-UI.s1 /CLONE=UI-R-CA0-bao-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.72653.1 /TIER=ConsEnd /STK=1 /UG=Rn.72653 /UG_TITLE=ESTs BE119999 THAP domain containing, apoptosis associated protein 3 Thap3 362667 NM_001108695 0003676 // nucleic acid binding // inferred from electronic annotation 1397309_at AI408217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408217 /DB_XREF=gi:4251721 /DB_XREF=EST236507 /CLONE=ROVEM24 /FEA=EST /CNT=3 /TID=Rn.55866.1 /TIER=ConsEnd /STK=1 /UG=Rn.55866 /UG_TITLE=ESTs AI408217 similar to FLJ20689 RGD1308907 314325 NM_001134559 1397310_at AI178436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178436 /DB_XREF=gi:3729074 /DB_XREF=EST222109 /CLONE=RPLCR02 /FEA=EST /CNT=3 /TID=Rn.29226.1 /TIER=ConsEnd /STK=1 /UG=Rn.29226 /UG_TITLE=ESTs AI178436 1397311_at AW919693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919693 /DB_XREF=gi:8085492 /DB_XREF=EST350997 /CLONE=RGIGF72 /FEA=EST /CNT=3 /TID=Rn.48945.1 /TIER=ConsEnd /STK=1 /UG=Rn.48945 /UG_TITLE=ESTs AW919693 1397312_at AI574904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI574904 /DB_XREF=gi:4544900 /DB_XREF=UI-R-G0-uf-d-12-0-UI.s1 /CLONE=UI-R-G0-uf-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.39012.1 /TIER=ConsEnd /STK=1 /UG=Rn.39012 /UG_TITLE=ESTs, Weakly similar to T19745 hypothetical protein C35A5.8 - Caenorhabditis elegans (C.elegans) AI574904 exportin 7 Xpo7 361070 NM_001108386 0006611 // protein export from nucleus // not recorded /// 0006886 // intracellular protein transport // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005643 // nuclear pore // not recorded /// 0005737 // cytoplasm // not recorded 0005049 // nuclear export signal receptor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation 1397313_at AI716841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716841 /DB_XREF=gi:5034097 /DB_XREF=UI-R-Y0-acg-g-09-0-UI.s1 /CLONE=UI-R-Y0-acg-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.67362.1 /TIER=ConsEnd /STK=1 /UG=Rn.67362 /UG_TITLE=ESTs AI716841 proline-rich nuclear receptor coactivator 2 Pnrc2 100125373 NM_001103360 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from sequence or structural similarity /// 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0000932 // cytoplasmic mRNA processing body // inferred from sequence or structural similarity /// 0000932 // cytoplasmic mRNA processing body // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 1397314_at AI548708 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548708 /DB_XREF=gi:4466196 /DB_XREF=UI-R-C3-tw-d-02-0-UI.s1 /CLONE=UI-R-C3-tw-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.43330.1 /TIER=ConsEnd /STK=1 /UG=Rn.43330 /UG_TITLE=ESTs, Moderately similar to TRANSFORMING PROTEIN P21K-RAS 2B (R.norvegicus) AI548708 1397315_at AI554978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI554978 /DB_XREF=gi:4487341 /DB_XREF=UI-R-C2p-qu-b-03-0-UI.s1 /CLONE=UI-R-C2p-qu-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.38511.1 /TIER=ConsEnd /STK=1 /UG=Rn.38511 /UG_TITLE=ESTs AI554978 1397316_at AI179830 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179830 /DB_XREF=gi:3730468 /DB_XREF=EST223560 /CLONE=RSPCM50 /FEA=EST /CNT=3 /TID=Rn.55904.1 /TIER=ConsEnd /STK=1 /UG=Rn.55904 /UG_TITLE=ESTs AI179830 1397317_at BI296984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296984 /DB_XREF=gi:14961946 /DB_XREF=UI-R-DK0-cgj-h-04-0-UI.s1 /CLONE=UI-R-DK0-cgj-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.35362.1 /TIER=ConsEnd /STK=1 /UG=Rn.35362 /UG_TITLE=ESTs BI296984 1397318_at AI070053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070053 /DB_XREF=gi:3396304 /DB_XREF=UI-R-C1-ln-g-08-0-UI.s1 /CLONE=UI-R-C1-ln-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.40324.1 /TIER=ConsEnd /STK=1 /UG=Rn.40324 /UG_TITLE=ESTs AI070053 1397319_at BF542311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542311 /DB_XREF=gi:11633418 /DB_XREF=UI-R-C2-nn-h-08-0-UI.r1 /CLONE=UI-R-C2-nn-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.77133.1 /TIER=ConsEnd /STK=1 /UG=Rn.77133 /UG_TITLE=ESTs BF542311 1397320_at BI293372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293372 /DB_XREF=gi:14954807 /DB_XREF=UI-R-DK0-cdo-d-06-0-UI.s1 /CLONE=UI-R-DK0-cdo-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.79421.1 /TIER=ConsEnd /STK=1 /UG=Rn.79421 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BI293372 1397321_at AA899866 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899866 /DB_XREF=gi:4232360 /DB_XREF=UI-R-E0-ck-a-12-0-UI.s2 /CLONE=UI-R-E0-ck-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.32415.1 /TIER=ConsEnd /STK=1 /UG=Rn.32415 /UG_TITLE=ESTs, Weakly similar to T21258 hypothetical protein F22D6.1 - Caenorhabditis elegans (C.elegans) AA899866 1397322_at AI176207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176207 /DB_XREF=gi:3726845 /DB_XREF=EST219788 /CLONE=ROVBO42 /FEA=EST /CNT=3 /TID=Rn.28977.1 /TIER=ConsEnd /STK=1 /UG=Rn.28977 /UG_TITLE=ESTs AI176207 1397323_x_at AW141996 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141996 /DB_XREF=gi:6161855 /DB_XREF=EST292111 /CLONE=RGICR82 /FEA=EST /CNT=3 /TID=Rn.13923.1 /TIER=ConsEnd /STK=1 /UG=Rn.13923 /UG_TITLE=ESTs, Weakly similar to RENAL TRANSCRIPTION FACTOR KID-1 (R.norvegicus) AW141996 1397324_at BE117105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117105 /DB_XREF=gi:8509210 /DB_XREF=UI-R-BJ1-awt-h-08-0-UI.s1 /CLONE=UI-R-BJ1-awt-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.48924.1 /TIER=ConsEnd /STK=1 /UG=Rn.48924 /UG_TITLE=ESTs BE117105 1397325_at AW535083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535083 /DB_XREF=gi:7177497 /DB_XREF=UI-R-C4-als-a-07-0-UI.s1 /CLONE=UI-R-C4-als-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.44897.1 /TIER=ConsEnd /STK=1 /UG=Rn.44897 /UG_TITLE=ESTs AW535083 1397326_at BE119158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119158 /DB_XREF=gi:8511263 /DB_XREF=UI-R-CA0-azz-b-10-0-UI.s1 /CLONE=UI-R-CA0-azz-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.55359.1 /TIER=ConsEnd /STK=1 /UG=Rn.55359 /UG_TITLE=ESTs BE119158 1397327_at AW919585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919585 /DB_XREF=gi:8085383 /DB_XREF=EST350889 /CLONE=RGIFZ38 /FEA=EST /CNT=3 /TID=Rn.55416.1 /TIER=ConsEnd /STK=1 /UG=Rn.55416 /UG_TITLE=ESTs AW919585 1397328_at AI555961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555961 /DB_XREF=gi:4488324 /DB_XREF=UI-R-C2p-rc-e-06-0-UI.s1 /CLONE=UI-R-C2p-rc-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.39181.1 /TIER=ConsEnd /STK=1 /UG=Rn.39181 /UG_TITLE=ESTs AI555961 1397329_at AI576277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576277 /DB_XREF=gi:4560653 /DB_XREF=UI-R-Y0-vb-c-05-0-UI.s1 /CLONE=UI-R-Y0-vb-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.48932.1 /TIER=ConsEnd /STK=1 /UG=Rn.48932 /UG_TITLE=ESTs AI576277 1397330_at BM384888 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384888 /DB_XREF=gi:18184941 /DB_XREF=UI-R-DY0-ckl-h-18-0-UI.s1 /CLONE=UI-R-DY0-ckl-h-18-0-UI /FEA=EST /CNT=3 /TID=Rn.55915.1 /TIER=ConsEnd /STK=1 /UG=Rn.55915 /UG_TITLE=ESTs BM384888 1397331_at BF388435 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388435 /DB_XREF=gi:11373259 /DB_XREF=UI-R-BS2-bdc-e-03-0-UI.s1 /CLONE=UI-R-BS2-bdc-e-03-0-UI /FEA=EST /CNT=3 /TID=Rn.56751.1 /TIER=ConsEnd /STK=1 /UG=Rn.56751 /UG_TITLE=ESTs BF388435 1397332_at BI297281 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297281 /DB_XREF=gi:14962507 /DB_XREF=UI-R-CV2-cgw-e-10-0-UI.s1 /CLONE=UI-R-CV2-cgw-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.26641.1 /TIER=ConsEnd /STK=1 /UG=Rn.26641 /UG_TITLE=ESTs BI297281 1397333_at BF418960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418960 /DB_XREF=gi:11406949 /DB_XREF=UI-R-BJ2-bqk-h-07-0-UI.s1 /CLONE=UI-R-BJ2-bqk-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.63459.1 /TIER=ConsEnd /STK=1 /UG=Rn.63459 /UG_TITLE=ESTs BF418960 sterile alpha motif domain containing 12 Samd12 362910 NM_001130562 1397334_at BM385096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385096 /DB_XREF=gi:18185149 /DB_XREF=UI-R-CN1-cjm-p-11-0-UI.s9 /CLONE=UI-R-CN1-cjm-p-11-0-UI /FEA=EST /CNT=3 /TID=Rn.63663.1 /TIER=ConsEnd /STK=1 /UG=Rn.63663 /UG_TITLE=ESTs, Highly similar to SC14_HUMAN SEC14-LIKE PROTEIN (H.sapiens) BM385096 SEC14-like 1 (S. cerevisiae) Sec14l1 360668 NM_001108309 1397335_at AW532165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532165 /DB_XREF=gi:7174579 /DB_XREF=UI-R-C4-alj-b-05-0-UI.s1 /CLONE=UI-R-C4-alj-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.47891.1 /TIER=ConsEnd /STK=1 /UG=Rn.47891 /UG_TITLE=ESTs AW532165 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D Sema3d 246262 NM_001104633 0007275 // multicellular organismal development // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1397336_at AI168993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI168993 /DB_XREF=gi:3705301 /DB_XREF=EST214821 /CLONE=RKIBL59 /FEA=EST /CNT=3 /TID=Rn.27992.1 /TIER=ConsEnd /STK=1 /UG=Rn.27992 /UG_TITLE=ESTs, Weakly similar to PAP_HUMAN POLY(A) POLYMERASE (H.sapiens) AI168993 poly(A) polymerase gamma Papolg 305586 NM_001107244 0006350 // transcription // inferred from electronic annotation /// 0031123 // RNA 3'-end processing // inferred from electronic annotation /// 0043631 // RNA polyadenylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0004652 // polynucleotide adenylyltransferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1397337_at BE119980 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119980 /DB_XREF=gi:8512085 /DB_XREF=UI-R-CA0-bao-c-02-0-UI.s1 /CLONE=UI-R-CA0-bao-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.53416.1 /TIER=ConsEnd /STK=1 /UG=Rn.53416 /UG_TITLE=ESTs, Highly similar to A49674 flightless-I homolog (H.sapiens) BE119980 1397338_at AI137999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137999 /DB_XREF=gi:3638776 /DB_XREF=UI-R-C2p-oi-b-10-0-UI.s1 /CLONE=UI-R-C2p-oi-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.27559.1 /TIER=ConsEnd /STK=1 /UG=Rn.27559 /UG_TITLE=ESTs AI137999 1397339_at AI763894 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763894 /DB_XREF=gi:5209829 /DB_XREF=UI-R-Y0-act-c-12-0-UI.s1 /CLONE=UI-R-Y0-act-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.26864.1 /TIER=ConsEnd /STK=1 /UG=Rn.26864 /UG_TITLE=ESTs AI763894 1397340_at AW521084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521084 /DB_XREF=gi:7163462 /DB_XREF=UI-R-BO0-agp-a-07-0-UI.s1 /CLONE=UI-R-BO0-agp-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.45102.1 /TIER=ConsEnd /STK=1 /UG=Rn.45102 /UG_TITLE=ESTs AW521084 1397341_at BG663837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663837 /DB_XREF=gi:13885759 /DB_XREF=DRAAAOC06 /CLONE=DRAAAOC06 /FEA=EST /CNT=3 /TID=Rn.59052.1 /TIER=ConsEnd /STK=1 /UG=Rn.59052 /UG_TITLE=ESTs BG663837 PDZ binding kinase Pbk 290326 NM_001079937 0006468 // protein phosphorylation // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1397342_at BF289352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289352 /DB_XREF=gi:11220422 /DB_XREF=EST453943 /CLONE=RGIHD82 /FEA=EST /CNT=3 /TID=Rn.55762.1 /TIER=ConsEnd /STK=1 /UG=Rn.55762 /UG_TITLE=ESTs BF289352 1397343_at BE113258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113258 /DB_XREF=gi:8505363 /DB_XREF=UI-R-BJ1-awd-d-03-0-UI.s1 /CLONE=UI-R-BJ1-awd-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.49863.1 /TIER=ConsEnd /STK=1 /UG=Rn.49863 /UG_TITLE=ESTs BE113258 1397344_at AI178200 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178200 /DB_XREF=gi:3728838 /DB_XREF=EST221865 /CLONE=RPLCN44 /FEA=EST /CNT=3 /TID=Rn.29191.1 /TIER=ConsEnd /STK=1 /UG=Rn.29191 /UG_TITLE=ESTs AI178200 1397345_at AI011553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011553 /DB_XREF=gi:3225385 /DB_XREF=EST206004 /CLONE=ROVAW59 /FEA=EST /CNT=3 /TID=Rn.55614.1 /TIER=ConsEnd /STK=1 /UG=Rn.55614 /UG_TITLE=ESTs AI011553 1397346_at BF565034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565034 /DB_XREF=gi:11674764 /DB_XREF=UI-R-BU0-amr-h-04-0-UI.r1 /CLONE=UI-R-BU0-amr-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.76315.1 /TIER=ConsEnd /STK=1 /UG=Rn.76315 /UG_TITLE=ESTs BF565034 1397347_at BF394194 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394194 /DB_XREF=gi:11379058 /DB_XREF=UI-R-CA0-bhb-e-07-0-UI.s1 /CLONE=UI-R-CA0-bhb-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.58238.1 /TIER=ConsEnd /STK=1 /UG=Rn.58238 /UG_TITLE=ESTs BF394194 1397348_at BE118444 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118444 /DB_XREF=gi:8510549 /DB_XREF=UI-R-BJ1-azp-f-09-0-UI.s1 /CLONE=UI-R-BJ1-azp-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.52992.1 /TIER=ConsEnd /STK=1 /UG=Rn.52992 /UG_TITLE=ESTs BE118444 1397349_at BF394199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394199 /DB_XREF=gi:11379063 /DB_XREF=UI-R-CA0-bhb-f-07-0-UI.s1 /CLONE=UI-R-CA0-bhb-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.55611.1 /TIER=ConsEnd /STK=1 /UG=Rn.55611 /UG_TITLE=ESTs, Moderately similar to REP8_HUMAN REP-8 PROTEIN (H.sapiens) BF394199 UBX domain protein 8 Ubxn8 290802 NM_001106086 1397350_at BE096697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096697 /DB_XREF=gi:8487587 /DB_XREF=UI-R-BU0-api-g-07-0-UI.s1 /CLONE=UI-R-BU0-api-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.49459.1 /TIER=ConsEnd /STK=1 /UG=Rn.49459 /UG_TITLE=ESTs BE096697 similar to RIKEN cDNA A730011L01 gene LOC498029 498029 XR_005461 /// XR_009608 0006281 // DNA repair // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation 1397351_s_at AW920190 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920190 /DB_XREF=gi:8085906 /DB_XREF=EST351403 /CLONE=RGIGQ85 /FEA=EST /CNT=3 /TID=Rn.55518.1 /TIER=ConsEnd /STK=1 /UG=Rn.55518 /UG_TITLE=ESTs AW920190 dishevelled, dsh homolog 1 (Drosophila) Dvl1 83721 NM_031820 0001505 // regulation of neurotransmitter levels // not recorded /// 0001505 // regulation of neurotransmitter levels // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0006469 // negative regulation of protein kinase activity // not recorded /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007528 // neuromuscular junction development // inferred from electronic annotation /// 0007528 // neuromuscular junction development // not recorded /// 0016055 // Wnt receptor signaling pathway // traceable author statement /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0021915 // neural tube development // inferred from electronic annotation /// 0021915 // neural tube development // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0030177 // positive regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0034504 // protein localization in nucleus // inferred from electronic annotation /// 0034504 // protein localization in nucleus // not recorded /// 0043113 // receptor clustering // inferred from electronic annotation /// 0043113 // receptor clustering // not recorded /// 0048813 // dendrite morphogenesis // inferred from electronic annotation /// 0048813 // dendrite morphogenesis // not recorded /// 0050808 // synapse organization // not recorded /// 0050808 // synapse organization // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0060070 // canonical Wnt receptor signaling pathway // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // not recorded /// 0019717 // synaptosome // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0031410 // cytoplasmic vesicle // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0048365 // Rac GTPase binding // inferred from physical interaction 1397352_at BF290961 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290961 /DB_XREF=gi:11222031 /DB_XREF=EST455552 /CLONE=RGIIG87 /FEA=EST /CNT=3 /TID=Rn.56006.1 /TIER=ConsEnd /STK=1 /UG=Rn.56006 /UG_TITLE=ESTs BF290961 1397353_at AW920297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920297 /DB_XREF=gi:8086106 /DB_XREF=EST351601 /CLONE=RGIGT58 /FEA=EST /CNT=3 /TID=Rn.55583.1 /TIER=ConsEnd /STK=1 /UG=Rn.55583 /UG_TITLE=ESTs AW920297 1397354_at AI412926 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412926 /DB_XREF=gi:4256430 /DB_XREF=EST241226 /CLONE=RKIEG70 /FEA=EST /CNT=3 /TID=Rn.43656.1 /TIER=ConsEnd /STK=1 /UG=Rn.43656 /UG_TITLE=ESTs AI412926 similar to RIKEN cDNA 1700023M03 RGD1305457 314730 NM_001009430 0006917 // induction of apoptosis // inferred from sequence or structural similarity /// 0010165 // response to X-ray // inferred from sequence or structural similarity 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1397355_at AW916626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916626 /DB_XREF=gi:8082356 /DB_XREF=EST347930 /CLONE=RGIDS57 /FEA=EST /CNT=3 /TID=Rn.49245.1 /TIER=ConsEnd /STK=1 /UG=Rn.49245 /UG_TITLE=ESTs AW916626 1397356_at AI234957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234957 /DB_XREF=gi:3828463 /DB_XREF=EST231519 /CLONE=ROVCK62 /FEA=EST /CNT=3 /TID=Rn.54186.1 /TIER=ConsEnd /STK=1 /UG=Rn.54186 /UG_TITLE=ESTs AI234957 Rho GTPase activating protein 1 Arhgap1 311193 NM_001107747 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0043087 // regulation of GTPase activity // not recorded 0001726 // ruffle // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005886 // plasma membrane // not recorded /// 0031252 // cell leading edge // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005100 // Rho GTPase activator activity // not recorded /// 0005515 // protein binding // not recorded /// 0030675 // Rac GTPase activator activity // not recorded 1397357_at AI237360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237360 /DB_XREF=gi:3830866 /DB_XREF=EST233922 /CLONE=RPLCY08 /FEA=EST /CNT=3 /TID=Rn.55500.1 /TIER=ConsEnd /STK=1 /UG=Rn.55500 /UG_TITLE=ESTs AI237360 Similar to RIKEN cDNA 4921507P07 LOC500124 500124 NM_001024329 1397358_at AI105407 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105407 /DB_XREF=gi:3705199 /DB_XREF=EST214696 /CLONE=RKIBJ87 /FEA=EST /CNT=3 /TID=Rn.27983.1 /TIER=ConsEnd /STK=1 /UG=Rn.27983 /UG_TITLE=ESTs AI105407 1397359_at BF288047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288047 /DB_XREF=gi:11219117 /DB_XREF=EST452638 /CLONE=RGIGO82 /FEA=EST /CNT=3 /TID=Rn.55495.1 /TIER=ConsEnd /STK=1 /UG=Rn.55495 /UG_TITLE=ESTs BF288047 1397360_at BM389024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389024 /DB_XREF=gi:18189077 /DB_XREF=UI-R-DZ0-cko-b-17-0-UI.s1 /CLONE=UI-R-DZ0-cko-b-17-0-UI /FEA=EST /CNT=3 /TID=Rn.82626.1 /TIER=ConsEnd /STK=1 /UG=Rn.82626 /UG_TITLE=ESTs BM389024 C-type lectin domain family 3, member a Clec3a 365009 NM_001108899 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation 1397361_x_at AI407549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407549 /DB_XREF=gi:4251053 /DB_XREF=EST235839 /CLONE=ROVDZ16 /FEA=EST /CNT=3 /TID=Rn.43596.1 /TIER=ConsEnd /STK=1 /UG=Rn.43596 /UG_TITLE=ESTs, Moderately similar to A60716 somatotropin intron-related protein RDE.25 - rat (R.norvegicus) AI407549 1397362_at AI071343 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071343 /DB_XREF=gi:3397558 /DB_XREF=UI-R-C1-ko-h-07-0-UI.s2 /CLONE=UI-R-C1-ko-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.33400.1 /TIER=ConsEnd /STK=1 /UG=Rn.33400 /UG_TITLE=ESTs AI071343 1397363_at AI103913 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103913 /DB_XREF=gi:3708388 /DB_XREF=EST213202 /CLONE=RHEBV07 /FEA=EST /CNT=4 /TID=Rn.28250.1 /TIER=ConsEnd /STK=1 /UG=Rn.28250 /UG_TITLE=ESTs AI103913 Poliovirus receptor-related 3 Pvrl3 288124 NM_001105883 0002089 // lens morphogenesis in camera-type eye // not recorded /// 0007155 // cell adhesion // not recorded /// 0007156 // homophilic cell adhesion // not recorded /// 0009566 // fertilization // not recorded /// 0016337 // cell-cell adhesion // not recorded /// 0060042 // retina morphogenesis in camera-type eye // not recorded 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // not recorded /// 0005913 // cell-cell adherens junction // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043296 // apical junction complex // not recorded 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0050839 // cell adhesion molecule binding // not recorded 1397364_at AW521314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521314 /DB_XREF=gi:7163692 /DB_XREF=UI-R-BO0-agl-b-02-0-UI.s1 /CLONE=UI-R-BO0-agl-b-02-0-UI /FEA=EST /CNT=4 /TID=Rn.41129.1 /TIER=ConsEnd /STK=1 /UG=Rn.41129 /UG_TITLE=ESTs AW521314 1397365_at BE101806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101806 /DB_XREF=gi:8493904 /DB_XREF=UI-R-BT1-aqh-f-01-0-UI.s1 /CLONE=UI-R-BT1-aqh-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.53867.1 /TIER=ConsEnd /STK=1 /UG=Rn.53867 /UG_TITLE=ESTs BE101806 1397366_at AI410878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410878 /DB_XREF=gi:4254382 /DB_XREF=EST239171 /CLONE=RHECY58 /FEA=EST /CNT=3 /TID=Rn.35637.1 /TIER=ConsEnd /STK=1 /UG=Rn.35637 /UG_TITLE=ESTs AI410878 ankyrin repeat and SOCS box-containing 14 Asb14 680076 NM_001170749 /// XM_001055574 /// XM_002725146 /// XM_002725147 /// XM_002728369 0023034 // intracellular signaling pathway // inferred from electronic annotation 1397367_at AI501213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501213 /DB_XREF=gi:4399064 /DB_XREF=UI-R-C2p-ry-b-02-0-UI.s1 /CLONE=UI-R-C2p-ry-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.35302.1 /TIER=ConsEnd /STK=1 /UG=Rn.35302 /UG_TITLE=ESTs AI501213 Hypothetical protein LOC689663 LOC689663 689663 XM_001071577 /// XM_002727229 1397368_at BE120588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120588 /DB_XREF=gi:8512693 /DB_XREF=UI-R-CA0-bav-c-08-0-UI.s1 /CLONE=UI-R-CA0-bav-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.65004.1 /TIER=ConsEnd /STK=1 /UG=Rn.65004 /UG_TITLE=ESTs BE120588 1397369_at BF387226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387226 /DB_XREF=gi:11372050 /DB_XREF=UI-R-CA1-bbl-a-08-0-UI.s1 /CLONE=UI-R-CA1-bbl-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.63577.1 /TIER=ConsEnd /STK=1 /UG=Rn.63577 /UG_TITLE=ESTs BF387226 1397370_at AI548338 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548338 /DB_XREF=gi:4465826 /DB_XREF=UI-R-C3-td-a-05-0-UI.s1 /CLONE=UI-R-C3-td-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.41914.1 /TIER=ConsEnd /STK=1 /UG=Rn.41914 /UG_TITLE=ESTs AI548338 1397371_at AI577362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577362 /DB_XREF=gi:4561738 /DB_XREF=UI-R-Y0-vn-d-08-0-UI.s1 /CLONE=UI-R-Y0-vn-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.38093.1 /TIER=ConsEnd /STK=1 /UG=Rn.38093 /UG_TITLE=ESTs AI577362 1397372_at BI289004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289004 /DB_XREF=gi:14946131 /DB_XREF=UI-R-DK0-cdh-d-06-0-UI.s1 /CLONE=UI-R-DK0-cdh-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.74475.1 /TIER=ConsEnd /STK=1 /UG=Rn.74475 /UG_TITLE=ESTs, Weakly similar to T12B3.4.p (Caenorhabditis elegans) (C.elegans) BI289004 MOB1, Mps One Binder kinase activator-like 1B (yeast) Mobkl1b 297387 NM_001033891 0035329 // hippo signaling cascade // inferred from electronic annotation /// 0035329 // hippo signaling cascade // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1397373_at AI575906 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575906 /DB_XREF=gi:4560282 /DB_XREF=UI-R-G0-ut-f-09-0-UI.s1 /CLONE=UI-R-G0-ut-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.64263.1 /TIER=ConsEnd /STK=1 /UG=Rn.64263 /UG_TITLE=ESTs, Weakly similar to NFM RAT NEUROFILAMENT TRIPLET M PROTEIN (R.norvegicus) AI575906 MAP7 domain containing 2 Map7d2 317508 XM_001054594 /// XM_228973 1397374_at AI237634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237634 /DB_XREF=gi:4136346 /DB_XREF=EST234196 /CLONE=RPLDB70 /FEA=EST /CNT=3 /TID=Rn.31722.1 /TIER=ConsEnd /STK=1 /UG=Rn.31722 /UG_TITLE=ESTs AI237634 1397375_at BM384537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384537 /DB_XREF=gi:18184590 /DB_XREF=UI-R-CN1-cjs-l-07-0-UI.s2 /CLONE=UI-R-CN1-cjs-l-07-0-UI /FEA=EST /CNT=3 /TID=Rn.62562.1 /TIER=ConsEnd /STK=1 /UG=Rn.62562 /UG_TITLE=ESTs BM384537 Acyl-CoA synthetase long-chain family member 5 Acsl5 94340 NM_053607 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // traceable author statement /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0008654 // phospholipid biosynthetic process // inferred from genetic interaction /// 0009744 // response to sucrose stimulus // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010747 // positive regulation of plasma membrane long-chain fatty acid transport // inferred from direct assay /// 0010867 // positive regulation of triglyceride biosynthetic process // inferred from direct assay /// 0015908 // fatty acid transport // inferred from genetic interaction /// 0032000 // positive regulation of fatty acid beta-oxidation // inferred from genetic interaction /// 0032869 // cellular response to insulin stimulus // inferred from expression pattern /// 0070723 // response to cholesterol // inferred from expression pattern 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from direct assay /// 0004467 // long-chain fatty acid-CoA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1397376_at BI285464 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285464 /DB_XREF=gi:14939128 /DB_XREF=UI-R-DD0-caa-d-11-0-UI.s1 /CLONE=UI-R-DD0-caa-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.78572.1 /TIER=ConsEnd /STK=1 /UG=Rn.78572 /UG_TITLE=ESTs BI285464 1397377_at AA955664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955664 /DB_XREF=gi:4238059 /DB_XREF=UI-R-E1-fc-g-02-0-UI.s1 /CLONE=UI-R-E1-fc-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.31836.1 /TIER=ConsEnd /STK=1 /UG=Rn.31836 /UG_TITLE=ESTs AA955664 1397378_at BE115240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115240 /DB_XREF=gi:8507345 /DB_XREF=UI-R-CA0-axr-a-01-0-UI.s1 /CLONE=UI-R-CA0-axr-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.75045.1 /TIER=ConsEnd /STK=1 /UG=Rn.75045 /UG_TITLE=ESTs BE115240 1397379_at BE118115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118115 /DB_XREF=gi:8510220 /DB_XREF=UI-R-BS1-azn-g-12-0-UI.s1 /CLONE=UI-R-BS1-azn-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.69513.1 /TIER=ConsEnd /STK=1 /UG=Rn.69513 /UG_TITLE=ESTs, Moderately similar to T17278 hypothetical protein DKFZp434E1335.1 (H.sapiens) BE118115 ankyrin repeat domain 6 Ankrd6 500430 NM_001134969 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1397380_at BG376947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376947 /DB_XREF=gi:13301419 /DB_XREF=UI-R-CU0-bvl-d-04-0-UI.s1 /CLONE=UI-R-CU0-bvl-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.66455.1 /TIER=ConsEnd /STK=1 /UG=Rn.66455 /UG_TITLE=ESTs BG376947 1397381_at AI136603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136603 /DB_XREF=gi:3637380 /DB_XREF=UI-R-C2p-ob-c-05-0-UI.s1 /CLONE=UI-R-C2p-ob-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.27184.1 /TIER=ConsEnd /STK=1 /UG=Rn.27184 /UG_TITLE=ESTs AI136603 1397382_at BE107990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107990 /DB_XREF=gi:8500095 /DB_XREF=UI-R-CA0-awz-b-08-0-UI.s1 /CLONE=UI-R-CA0-awz-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.51368.1 /TIER=ConsEnd /STK=1 /UG=Rn.51368 /UG_TITLE=ESTs BE107990 1397383_at BF391062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391062 /DB_XREF=gi:11375909 /DB_XREF=UI-R-CA1-bcf-g-01-0-UI.s1 /CLONE=UI-R-CA1-bcf-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.57372.1 /TIER=ConsEnd /STK=1 /UG=Rn.57372 /UG_TITLE=ESTs, Weakly similar to Drosophila NK transcription factor related, gene family 6, locus 1 (Rattus norvegicus) (R.norvegicus) BF391062 empty spiracles homeobox 1 Emx1 500235 XM_001073769 /// XM_575584 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0009791 // post-embryonic development // not recorded /// 0021796 // cerebral cortex regionalization // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0030182 // neuron differentiation // not recorded /// 0042493 // response to drug // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1397384_at BM391073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391073 /DB_XREF=gi:18191126 /DB_XREF=UI-R-CN1-cjr-b-18-0-UI.s1 /CLONE=UI-R-CN1-cjr-b-18-0-UI /FEA=EST /CNT=2 /TID=Rn.82598.1 /TIER=ConsEnd /STK=1 /UG=Rn.82598 /UG_TITLE=ESTs BM391073 1397385_at BM387110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387110 /DB_XREF=gi:18187163 /DB_XREF=UI-R-CN1-cji-o-08-0-UI.s1 /CLONE=UI-R-CN1-cji-o-08-0-UI /FEA=EST /CNT=2 /TID=Rn.81924.1 /TIER=ConsEnd /STK=1 /UG=Rn.81924 /UG_TITLE=ESTs BM387110 1397386_at AI715727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715727 /DB_XREF=gi:5032980 /DB_XREF=UI-R-Y0-abt-c-06-0-UI.s1 /CLONE=UI-R-Y0-abt-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.41500.1 /TIER=ConsEnd /STK=1 /UG=Rn.41500 /UG_TITLE=ESTs, Weakly similar to FMR2_MOUSE Fragile X mental retardation protein 2 homolog (Protein FMR-2) (FMR2P) (Ox19 protein) (M.musculus) AI715727 AF4/FMR2 family, member 4 Aff4 303132 NM_001107001 0007286 // spermatid development // not recorded 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1397387_at AA901254 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901254 /DB_XREF=gi:4233755 /DB_XREF=UI-R-A1-dw-f-11-0-UI.s1 /CLONE=UI-R-A1-dw-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.32558.1 /TIER=ConsEnd /STK=1 /UG=Rn.32558 /UG_TITLE=ESTs AA901254 nuclear DNA binding protein C1d 289810 NM_001106021 0016481 // negative regulation of transcription // inferred from electronic annotation 0017053 // transcriptional repressor complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016922 // ligand-dependent nuclear receptor binding // inferred from electronic annotation 1397388_at AI555001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555001 /DB_XREF=gi:4487364 /DB_XREF=UI-R-C2p-qu-f-04-0-UI.s1 /CLONE=UI-R-C2p-qu-f-04-0-UI /FEA=EST /CNT=2 /TID=Rn.64978.1 /TIER=ConsEnd /STK=1 /UG=Rn.64978 /UG_TITLE=ESTs AI555001 1397389_at BF398664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398664 /DB_XREF=gi:11383661 /DB_XREF=UI-R-BS2-ber-d-11-0-UI.s1 /CLONE=UI-R-BS2-ber-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.76233.1 /TIER=ConsEnd /STK=1 /UG=Rn.76233 /UG_TITLE=ESTs BF398664 1397390_at BF398678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398678 /DB_XREF=gi:11383675 /DB_XREF=UI-R-BS2-ber-f-02-0-UI.s1 /CLONE=UI-R-BS2-ber-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.59140.1 /TIER=ConsEnd /STK=1 /UG=Rn.59140 /UG_TITLE=ESTs BF398678 1397391_at AI454739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454739 /DB_XREF=gi:4295832 /DB_XREF=UI-R-C2p-qj-e-08-0-UI.s1 /CLONE=UI-R-C2p-qj-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.72558.1 /TIER=ConsEnd /STK=1 /UG=Rn.72558 /UG_TITLE=ESTs AI454739 1397392_at AW535120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535120 /DB_XREF=gi:7177534 /DB_XREF=UI-R-C4-als-d-11-0-UI.s1 /CLONE=UI-R-C4-als-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.33349.1 /TIER=ConsEnd /STK=1 /UG=Rn.33349 /UG_TITLE=ESTs AW535120 1397393_at AI231774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231774 /DB_XREF=gi:3815654 /DB_XREF=EST228462 /CLONE=RHECO14 /FEA=EST /CNT=2 /TID=Rn.78810.1 /TIER=ConsEnd /STK=1 /UG=Rn.78810 /UG_TITLE=ESTs AI231774 1397394_at BF412275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412275 /DB_XREF=gi:11400264 /DB_XREF=UI-R-BT1-bnb-e-09-0-UI.s1 /CLONE=UI-R-BT1-bnb-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.63843.1 /TIER=ConsEnd /STK=1 /UG=Rn.63843 /UG_TITLE=ESTs BF412275 suppressor of cancer cell invasion Scai 690538 XM_001074743 0016481 // negative regulation of transcription // not recorded /// 0030336 // negative regulation of cell migration // not recorded /// 0035024 // negative regulation of Rho protein signal transduction // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded 1397395_at AI555034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555034 /DB_XREF=gi:4487397 /DB_XREF=UI-R-C2p-qv-d-06-0-UI.s1 /CLONE=UI-R-C2p-qv-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.38009.1 /TIER=ConsEnd /STK=1 /UG=Rn.38009 /UG_TITLE=ESTs AI555034 1397396_at BE109259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109259 /DB_XREF=gi:8501364 /DB_XREF=UI-R-BS1-azd-g-03-0-UI.s1 /CLONE=UI-R-BS1-azd-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.51700.1 /TIER=ConsEnd /STK=1 /UG=Rn.51700 /UG_TITLE=ESTs BE109259 Similar to CG10084-PA RGD1308297 306137 XR_005470 /// XR_009612 1397397_at BI291859 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291859 /DB_XREF=gi:14951801 /DB_XREF=UI-R-DN0-cit-p-24-0-UI.s1 /CLONE=UI-R-DN0-cit-p-24-0-UI /FEA=EST /CNT=2 /TID=Rn.42036.1 /TIER=ConsEnd /STK=1 /UG=Rn.42036 /UG_TITLE=ESTs BI291859 premature ovarian failure 1B Pof1b 302328 NM_001106934 0006508 // proteolysis // inferred from electronic annotation 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1397398_at BG376725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376725 /DB_XREF=gi:13301197 /DB_XREF=UI-R-CU0-buv-c-02-0-UI.s1 /CLONE=UI-R-CU0-buv-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.66412.1 /TIER=ConsEnd /STK=1 /UG=Rn.66412 /UG_TITLE=ESTs BG376725 1397399_at AW528372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528372 /DB_XREF=gi:7170786 /DB_XREF=UI-R-BT1-ajx-f-11-0-UI.s1 /CLONE=UI-R-BT1-ajx-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.45309.1 /TIER=ConsEnd /STK=1 /UG=Rn.45309 /UG_TITLE=ESTs AW528372 Poly (ADP-ribose) polymerase family, member 11 Parp11 500323 XM_002726432 /// XM_575674 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from electronic annotation 1397400_at BM391846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391846 /DB_XREF=gi:18191899 /DB_XREF=UI-R-DO1-cmk-h-06-0-UI.s1 /CLONE=UI-R-DO1-cmk-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.70735.1 /TIER=ConsEnd /STK=1 /UG=Rn.70735 /UG_TITLE=ESTs BM391846 1397401_at AW525270 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525270 /DB_XREF=gi:7167695 /DB_XREF=UI-R-BJ0p-aiq-b-12-0-UI.s1 /CLONE=UI-R-BJ0p-aiq-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.45981.1 /TIER=ConsEnd /STK=1 /UG=Rn.45981 /UG_TITLE=ESTs AW525270 family with sequence similarity 168, member A Fam168a 361614 NM_001108494 1397402_at BE097073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097073 /DB_XREF=gi:8488004 /DB_XREF=UI-R-BO1-apw-g-07-0-UI.s1 /CLONE=UI-R-BO1-apw-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.49524.1 /TIER=ConsEnd /STK=1 /UG=Rn.49524 /UG_TITLE=ESTs BE097073 1397403_at AI105130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105130 /DB_XREF=gi:3709288 /DB_XREF=EST214419 /CLONE=RKIBG01 /FEA=EST /CNT=2 /TID=Rn.28319.1 /TIER=ConsEnd /STK=1 /UG=Rn.28319 /UG_TITLE=ESTs AI105130 1397404_at AI233732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233732 /DB_XREF=gi:3817612 /DB_XREF=EST230420 /CLONE=RKIDJ42 /FEA=EST /CNT=2 /TID=Rn.56026.1 /TIER=ConsEnd /STK=1 /UG=Rn.56026 /UG_TITLE=ESTs AI233732 1397405_at BM385221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM385221 /DB_XREF=gi:18185274 /DB_XREF=UI-R-CN1-cjs-n-18-0-UI.s2 /CLONE=UI-R-CN1-cjs-n-18-0-UI /FEA=EST /CNT=2 /TID=Rn.81554.1 /TIER=ConsEnd /STK=1 /UG=Rn.81554 /UG_TITLE=ESTs, Highly similar to S72367 ATP-dependent RNA helicase (H.sapiens) BM385221 DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 Ddx17 315133 NM_001015018 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1397406_at BF411788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411788 /DB_XREF=gi:11399777 /DB_XREF=UI-R-BT1-bmw-b-09-0-UI.s1 /CLONE=UI-R-BT1-bmw-b-09-0-UI /FEA=EST /CNT=2 /TID=Rn.61922.1 /TIER=ConsEnd /STK=1 /UG=Rn.61922 /UG_TITLE=ESTs BF411788 1397407_at AI137564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137564 /DB_XREF=gi:3638341 /DB_XREF=UI-R-C0-gy-c-07-0-UI.s1 /CLONE=UI-R-C0-gy-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.27457.1 /TIER=ConsEnd /STK=1 /UG=Rn.27457 /UG_TITLE=ESTs AI137564 1397408_at AI407913 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407913 /DB_XREF=gi:4251417 /DB_XREF=EST236203 /CLONE=ROVEE37 /FEA=EST /CNT=2 /TID=Rn.65230.1 /TIER=ConsEnd /STK=1 /UG=Rn.65230 /UG_TITLE=ESTs AI407913 1397409_s_at BE113999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113999 /DB_XREF=gi:8506104 /DB_XREF=UI-R-BJ1-awi-h-04-0-UI.s1 /CLONE=UI-R-BJ1-awi-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.52281.1 /TIER=ConsEnd /STK=1 /UG=Rn.52281 /UG_TITLE=ESTs BE113999 wee 1 homolog (S. pombe) Wee1 308937 NM_001012742 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397410_at BI301687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301687 /DB_XREF=gi:14977967 /DB_XREF=UI-R-DL0-cin-m-22-0-UI.s1 /CLONE=UI-R-DL0-cin-m-22-0-UI /FEA=EST /CNT=2 /TID=Rn.46119.1 /TIER=ConsEnd /STK=1 /UG=Rn.46119 /UG_TITLE=ESTs BI301687 1397411_at AI408621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408621 /DB_XREF=gi:4252125 /DB_XREF=EST236911 /CLONE=ROVEK37 /FEA=EST /CNT=2 /TID=Rn.55861.1 /TIER=ConsEnd /STK=1 /UG=Rn.55861 /UG_TITLE=ESTs, Weakly similar to FGD1 MOUSE PUTATIVE RHORAC GUANINE NUCLEOTIDE EXCHANGE FACTOR (M.musculus) AI408621 FYVE, RhoGEF and PH domain containing 2 Fgd2 309653 NM_001107617 0006915 // apoptosis // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397412_at BE107094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107094 /DB_XREF=gi:8499199 /DB_XREF=UI-R-BS1-ayp-g-07-0-UI.s1 /CLONE=UI-R-BS1-ayp-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.51112.1 /TIER=ConsEnd /STK=1 /UG=Rn.51112 /UG_TITLE=ESTs BE107094 1397413_at AI549341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549341 /DB_XREF=gi:4466829 /DB_XREF=UI-R-C3-ty-e-10-0-UI.s1 /CLONE=UI-R-C3-ty-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.64838.1 /TIER=ConsEnd /STK=1 /UG=Rn.64838 /UG_TITLE=ESTs AI549341 1397414_at BF389307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389307 /DB_XREF=gi:11374132 /DB_XREF=UI-R-BS2-bdm-c-03-0-UI.s1 /CLONE=UI-R-BS2-bdm-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.72425.1 /TIER=ConsEnd /STK=1 /UG=Rn.72425 /UG_TITLE=ESTs BF389307 1397415_at AA851874 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851874 /DB_XREF=gi:2939414 /DB_XREF=EST194643 /CLONE=RSPAN76 /FEA=EST /CNT=2 /TID=Rn.39357.1 /TIER=ConsEnd /STK=1 /UG=Rn.39357 /UG_TITLE=ESTs AA851874 atlastin GTPase 1 Atl1 362750 NM_001009831 0007029 // endoplasmic reticulum organization // not recorded /// 0007029 // endoplasmic reticulum organization // inferred from sequence or structural similarity /// 0007409 // axonogenesis // inferred from mutant phenotype /// 0051260 // protein homooligomerization // not recorded /// 0051260 // protein homooligomerization // inferred from sequence or structural similarity 0000137 // Golgi cis cisterna // inferred from direct assay /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030424 // axon // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0003924 // GTPase activity // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from mutant phenotype /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from sequence or structural similarity 1397416_at BG672308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672308 /DB_XREF=gi:13894407 /DB_XREF=DRNCFC07 /CLONE=DRNCFC07 /FEA=EST /CNT=2 /TID=Rn.57152.1 /TIER=ConsEnd /STK=1 /UG=Rn.57152 /UG_TITLE=ESTs BG672308 1397417_at BG671626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671626 /DB_XREF=gi:13893725 /DB_XREF=DRNBVF10 /CLONE=DRNBVF10 /FEA=EST /CNT=2 /TID=Rn.47970.1 /TIER=ConsEnd /STK=1 /UG=Rn.47970 /UG_TITLE=ESTs BG671626 1397418_at AW920977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920977 /DB_XREF=gi:8086795 /DB_XREF=EST352281 /CLONE=RGIHK62 /FEA=EST /CNT=2 /TID=Rn.43792.1 /TIER=ConsEnd /STK=1 /UG=Rn.43792 /UG_TITLE=ESTs AW920977 1397419_at AI101314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101314 /DB_XREF=gi:3706235 /DB_XREF=EST210603 /CLONE=RBRBL27 /FEA=EST /CNT=2 /TID=Rn.58523.1 /TIER=ConsEnd /STK=1 /UG=Rn.58523 /UG_TITLE=ESTs AI101314 Membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) Mpp6 362359 NM_001134982 0005886 // plasma membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030165 // PDZ domain binding // inferred from physical interaction 1397420_at BM390412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390412 /DB_XREF=gi:18190465 /DB_XREF=UI-R-CN1-cjq-n-03-0-UI.s1 /CLONE=UI-R-CN1-cjq-n-03-0-UI /FEA=EST /CNT=2 /TID=Rn.82445.1 /TIER=ConsEnd /STK=1 /UG=Rn.82445 /UG_TITLE=ESTs BM390412 1397421_at AI549253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549253 /DB_XREF=gi:4466741 /DB_XREF=UI-R-C3-tx-d-12-0-UI.s1 /CLONE=UI-R-C3-tx-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.42027.1 /TIER=ConsEnd /STK=1 /UG=Rn.42027 /UG_TITLE=ESTs AI549253 1397422_at BF390904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390904 /DB_XREF=gi:11375751 /DB_XREF=UI-R-CA1-bci-h-04-0-UI.s1 /CLONE=UI-R-CA1-bci-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.57323.1 /TIER=ConsEnd /STK=1 /UG=Rn.57323 /UG_TITLE=ESTs BF390904 1397423_at BI292177 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292177 /DB_XREF=gi:14952427 /DB_XREF=UI-R-DN0-civ-e-07-0-UI.s1 /CLONE=UI-R-DN0-civ-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.79309.1 /TIER=ConsEnd /STK=1 /UG=Rn.79309 /UG_TITLE=ESTs BI292177 1397424_at BM389876 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389876 /DB_XREF=gi:18189929 /DB_XREF=UI-R-CN1-cji-d-18-0-UI.s1 /CLONE=UI-R-CN1-cji-d-18-0-UI /FEA=EST /CNT=2 /TID=Rn.82333.1 /TIER=ConsEnd /STK=1 /UG=Rn.82333 /UG_TITLE=ESTs BM389876 Synaptopodin 2 Synpo2 499702 NM_001191963 /// XM_001074385 /// XM_575030 0005515 // protein binding // inferred from electronic annotation 1397425_at AI172341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172341 /DB_XREF=gi:3712381 /DB_XREF=EST218343 /CLONE=RMUBY08 /FEA=EST /CNT=2 /TID=Rn.52406.1 /TIER=ConsEnd /STK=1 /UG=Rn.52406 /UG_TITLE=ESTs, Highly similar to T08800 hypothetical protein DKFZp586D2123.1 (H.sapiens) AI172341 RAB GTPase activating protein 1 Rabgap1 311911 NM_001107841 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1397426_at BF420643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420643 /DB_XREF=gi:11408632 /DB_XREF=UI-R-BJ2-bpy-d-09-0-UI.s1 /CLONE=UI-R-BJ2-bpy-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.66577.1 /TIER=ConsEnd /STK=1 /UG=Rn.66577 /UG_TITLE=ESTs BF420643 1397427_at BI302102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302102 /DB_XREF=gi:14978382 /DB_XREF=UI-R-DL0-cip-g-24-0-UI.s1 /CLONE=UI-R-DL0-cip-g-24-0-UI /FEA=EST /CNT=2 /TID=Rn.77273.1 /TIER=ConsEnd /STK=1 /UG=Rn.77273 /UG_TITLE=ESTs BI302102 Carboxylesterase 3 Ces3 113902 NM_133295 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // non-traceable author statement /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005792 // microsome // traceable author statement 0004091 // carboxylesterase activity // inferred from mutant phenotype /// 0004091 // carboxylesterase activity // traceable author statement /// 0004091 // carboxylesterase activity // inferred from direct assay /// 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030339 // fatty-acyl-ethyl-ester synthase activity // inferred from electronic annotation 1397428_at BE119034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119034 /DB_XREF=gi:8511139 /DB_XREF=UI-R-CA0-azx-f-06-0-UI.s1 /CLONE=UI-R-CA0-azx-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.69561.1 /TIER=ConsEnd /STK=1 /UG=Rn.69561 /UG_TITLE=ESTs BE119034 1397429_at AI556638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556638 /DB_XREF=gi:4489001 /DB_XREF=UI-R-C2p-ri-f-10-0-UI.s1 /CLONE=UI-R-C2p-ri-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.79543.1 /TIER=ConsEnd /STK=1 /UG=Rn.79543 /UG_TITLE=ESTs AI556638 Similar to cAMP responsive element binding protein 5 RGD1566107 500131 NM_001134621 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation 1397430_at BF403977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403977 /DB_XREF=gi:11391952 /DB_XREF=UI-R-CA1-bjd-a-14-0-UI.s1 /CLONE=UI-R-CA1-bjd-a-14-0-UI /FEA=EST /CNT=2 /TID=Rn.63817.1 /TIER=ConsEnd /STK=1 /UG=Rn.63817 /UG_TITLE=ESTs BF403977 1397431_at BE102945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102945 /DB_XREF=gi:8495044 /DB_XREF=UI-R-BT1-aqu-c-12-0-UI.s1 /CLONE=UI-R-BT1-aqu-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.61741.1 /TIER=ConsEnd /STK=1 /UG=Rn.61741 /UG_TITLE=ESTs BE102945 1397432_at BE119690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119690 /DB_XREF=gi:8511795 /DB_XREF=UI-R-CA0-baz-g-09-0-UI.s1 /CLONE=UI-R-CA0-baz-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.51710.1 /TIER=ConsEnd /STK=1 /UG=Rn.51710 /UG_TITLE=ESTs BE119690 zinc finger protein 438 Zfp438 307024 NM_001107358 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1397433_at BF417146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417146 /DB_XREF=gi:11405135 /DB_XREF=UI-R-CN0-bkx-e-11-0-UI.s1 /CLONE=UI-R-CN0-bkx-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.52974.1 /TIER=ConsEnd /STK=1 /UG=Rn.52974 /UG_TITLE=ESTs BF417146 1397434_at BF399188 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399188 /DB_XREF=gi:11384192 /DB_XREF=UI-R-CA1-bjb-i-03-0-UI.s1 /CLONE=UI-R-CA1-bjb-i-03-0-UI /FEA=EST /CNT=2 /TID=Rn.59296.1 /TIER=ConsEnd /STK=1 /UG=Rn.59296 /UG_TITLE=ESTs BF399188 1397435_at BF394050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394050 /DB_XREF=gi:11378914 /DB_XREF=UI-R-CA0-bgy-d-02-0-UI.s1 /CLONE=UI-R-CA0-bgy-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.54212.1 /TIER=ConsEnd /STK=1 /UG=Rn.54212 /UG_TITLE=ESTs BF394050 1397436_at BF409822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409822 /DB_XREF=gi:11397797 /DB_XREF=UI-R-CA1-bjr-b-12-0-UI.s1 /CLONE=UI-R-CA1-bjr-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.61492.1 /TIER=ConsEnd /STK=1 /UG=Rn.61492 /UG_TITLE=ESTs BF409822 1397437_at AI715395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715395 /DB_XREF=gi:5032648 /DB_XREF=UI-R-Y0-abm-a-08-0-UI.s1 /CLONE=UI-R-Y0-abm-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.72467.1 /TIER=ConsEnd /STK=1 /UG=Rn.72467 /UG_TITLE=ESTs AI715395 AT rich interactive domain 5A (Mrf1 like) Arid5a 316327 NM_001034934 0005622 // intracellular // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1397438_at BF402906 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402906 /DB_XREF=gi:11390881 /DB_XREF=UI-R-CA0-bhi-h-09-0-UI.s1 /CLONE=UI-R-CA0-bhi-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.27214.1 /TIER=ConsEnd /STK=1 /UG=Rn.27214 /UG_TITLE=ESTs, Highly similar to T42372 probable guanylate kinase (M.musculus) BF402906 Membrane associated guanylate kinase, WW and PDZ domain containing 1 Magi1 500261 NM_001030045 0005737 // cytoplasm // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1397439_at AI101639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101639 /DB_XREF=gi:3706514 /DB_XREF=EST210928 /CLONE=RBRBT25 /FEA=EST /CNT=2 /TID=Rn.41203.1 /TIER=ConsEnd /STK=1 /UG=Rn.41203 /UG_TITLE=ESTs AI101639 similar to diacylglycerol kinase epsilon LOC497978 497978 NM_001039341 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0004143 // diacylglycerol kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1397440_at AW521533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521533 /DB_XREF=gi:7163883 /DB_XREF=UI-R-BO0-agn-c-04-0-UI.s1 /CLONE=UI-R-BO0-agn-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.67617.1 /TIER=ConsEnd /STK=1 /UG=Rn.67617 /UG_TITLE=ESTs AW521533 Multiple EGF-like domains 10 Megf10 291445 NM_001100657 0042552 // myelination // non-traceable author statement 1397441_at BM390838 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390838 /DB_XREF=gi:18190891 /DB_XREF=UI-R-CN1-cjo-l-20-0-UI.s1 /CLONE=UI-R-CN1-cjo-l-20-0-UI /FEA=EST /CNT=2 /TID=Rn.79460.1 /TIER=ConsEnd /STK=1 /UG=Rn.79460 /UG_TITLE=ESTs BM390838 tetratricopeptide repeat domain 13 Ttc13 292095 NM_001136162 0005488 // binding // inferred from electronic annotation 1397442_at BF409045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409045 /DB_XREF=gi:11397020 /DB_XREF=UI-R-BT1-bkl-d-03-0-UI.s1 /CLONE=UI-R-BT1-bkl-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.61225.1 /TIER=ConsEnd /STK=1 /UG=Rn.61225 /UG_TITLE=ESTs, Highly similar to SYNAPTOTAGMIN V (R.norvegicus) BF409045 hypothetical protein LOC100359695 LOC100359695 100359695 XM_002725518 /// XM_002728665 1397443_at BF398770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398770 /DB_XREF=gi:11383735 /DB_XREF=UI-R-BS2-bes-c-05-0-UI.s1 /CLONE=UI-R-BS2-bes-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.59151.1 /TIER=ConsEnd /STK=1 /UG=Rn.59151 /UG_TITLE=ESTs BF398770 1397444_at BE108044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108044 /DB_XREF=gi:8500149 /DB_XREF=UI-R-CA0-awz-g-05-0-UI.s1 /CLONE=UI-R-CA0-awz-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.51393.1 /TIER=ConsEnd /STK=1 /UG=Rn.51393 /UG_TITLE=ESTs BE108044 1397445_at AW535703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535703 /DB_XREF=gi:7178117 /DB_XREF=UI-R-BS0-aod-a-08-0-UI.s1 /CLONE=UI-R-BS0-aod-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.48544.1 /TIER=ConsEnd /STK=1 /UG=Rn.48544 /UG_TITLE=ESTs AW535703 1397446_at BG379832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379832 /DB_XREF=gi:13304304 /DB_XREF=UI-R-CS0-btn-g-03-0-UI.s1 /CLONE=UI-R-CS0-btn-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.73319.1 /TIER=ConsEnd /STK=1 /UG=Rn.73319 /UG_TITLE=ESTs BG379832 ring finger protein 207 Rnf207 691246 XM_001075996 /// XM_002726663 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397447_at BE106981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106981 /DB_XREF=gi:8499118 /DB_XREF=UI-R-BT1-ass-g-10-0-UI.s1 /CLONE=UI-R-BT1-ass-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.74849.1 /TIER=ConsEnd /STK=1 /UG=Rn.74849 /UG_TITLE=ESTs BE106981 zinc finger protein 398 Zfp398 500108 NM_001109230 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397448_at BE108434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108434 /DB_XREF=gi:8500539 /DB_XREF=UI-R-CA0-axc-b-12-0-UI.s1 /CLONE=UI-R-CA0-axc-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.69097.1 /TIER=ConsEnd /STK=1 /UG=Rn.69097 /UG_TITLE=ESTs BE108434 1397449_at AI059353 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059353 /DB_XREF=gi:3333130 /DB_XREF=UI-R-C1-ld-a-07-0-UI.s1 /CLONE=UI-R-C1-ld-a-07-0-UI /FEA=EST /CNT=2 /TID=Rn.38173.1 /TIER=ConsEnd /STK=1 /UG=Rn.38173 /UG_TITLE=ESTs AI059353 1397450_at BF388728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388728 /DB_XREF=gi:11373552 /DB_XREF=UI-R-BS2-bdb-h-03-0-UI.s1 /CLONE=UI-R-BS2-bdb-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.56807.1 /TIER=ConsEnd /STK=1 /UG=Rn.56807 /UG_TITLE=ESTs BF388728 1397451_at BI293050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293050 /DB_XREF=gi:14954173 /DB_XREF=UI-R-DK0-cdj-g-05-0-UI.s1 /CLONE=UI-R-DK0-cdj-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.79375.1 /TIER=ConsEnd /STK=1 /UG=Rn.79375 /UG_TITLE=ESTs BI293050 1397452_at AI112776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112776 /DB_XREF=gi:3512725 /DB_XREF=UI-R-E1-fm-b-12-0-UI.s1 /CLONE=UI-R-E1-fm-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.26843.1 /TIER=ConsEnd /STK=1 /UG=Rn.26843 /UG_TITLE=ESTs AI112776 1397453_at BM390792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390792 /DB_XREF=gi:18190845 /DB_XREF=UI-R-CN1-cjo-b-24-0-UI.s1 /CLONE=UI-R-CN1-cjo-b-24-0-UI /FEA=EST /CNT=2 /TID=Rn.80937.1 /TIER=ConsEnd /STK=1 /UG=Rn.80937 /UG_TITLE=ESTs BM390792 1397454_at AW522622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522622 /DB_XREF=gi:7165007 /DB_XREF=UI-R-BO0-ahd-h-06-0-UI.s1 /CLONE=UI-R-BO0-ahd-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.63819.1 /TIER=ConsEnd /STK=1 /UG=Rn.63819 /UG_TITLE=ESTs AW522622 1397455_at BF389525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389525 /DB_XREF=gi:11374360 /DB_XREF=UI-R-CJ0-bfc-g-05-0-UI.s1 /CLONE=UI-R-CJ0-bfc-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.60616.1 /TIER=ConsEnd /STK=1 /UG=Rn.60616 /UG_TITLE=ESTs BF389525 1397456_at BI293930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293930 /DB_XREF=gi:14955898 /DB_XREF=UI-R-DK0-cdw-g-05-0-UI.s1 /CLONE=UI-R-DK0-cdw-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.70197.1 /TIER=ConsEnd /STK=1 /UG=Rn.70197 /UG_TITLE=ESTs BI293930 zinc finger protein 827 Zfp827 291940 XM_001074445 /// XM_226365 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1397457_at BE106796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106796 /DB_XREF=gi:8498898 /DB_XREF=UI-R-BT1-ast-c-07-0-UI.s1 /CLONE=UI-R-BT1-ast-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.49057.1 /TIER=ConsEnd /STK=1 /UG=Rn.49057 /UG_TITLE=ESTs BE106796 1397458_at AW533978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533978 /DB_XREF=gi:7176392 /DB_XREF=UI-R-C4-alr-d-06-0-UI.s1 /CLONE=UI-R-C4-alr-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.36193.1 /TIER=ConsEnd /STK=1 /UG=Rn.36193 /UG_TITLE=ESTs, Highly similar to PMM2_MOUSE PHOSPHOMANNOMUTASE 2 (PMM 2) (M.musculus) AW533978 phosphomannomutase 2 Pmm2 302915 NM_001106973 0008152 // metabolic process // inferred from electronic annotation /// 0019307 // mannose biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004615 // phosphomannomutase activity // inferred from electronic annotation 1397459_at BE119278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119278 /DB_XREF=gi:8511383 /DB_XREF=UI-R-CA0-baa-e-06-0-UI.s1 /CLONE=UI-R-CA0-baa-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.48987.1 /TIER=ConsEnd /STK=1 /UG=Rn.48987 /UG_TITLE=ESTs BE119278 1397460_at BE119491 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119491 /DB_XREF=gi:8511560 /DB_XREF=UI-R-CA0-bac-h-09-0-UI.s1 /CLONE=UI-R-CA0-bac-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.53249.1 /TIER=ConsEnd /STK=1 /UG=Rn.53249 /UG_TITLE=ESTs BE119491 1397461_at BF416400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416400 /DB_XREF=gi:11404389 /DB_XREF=UI-R-CA0-bks-b-08-0-UI.s1 /CLONE=UI-R-CA0-bks-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.66140.1 /TIER=ConsEnd /STK=1 /UG=Rn.66140 /UG_TITLE=ESTs BF416400 glycosyltransferase 8 domain containing 2 Glt8d2 366859 XM_001079763 /// XM_345809 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1397462_at BF415997 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415997 /DB_XREF=gi:11403986 /DB_XREF=UI-R-CA0-bkp-g-11-0-UI.s1 /CLONE=UI-R-CA0-bkp-g-11-0-UI /FEA=EST /CNT=2 /TID=Rn.62700.1 /TIER=ConsEnd /STK=1 /UG=Rn.62700 /UG_TITLE=ESTs BF415997 1397463_at BE105818 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105818 /DB_XREF=gi:8497925 /DB_XREF=UI-R-BX0-ary-e-10-0-UI.s1 /CLONE=UI-R-BX0-ary-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.50831.1 /TIER=ConsEnd /STK=1 /UG=Rn.50831 /UG_TITLE=ESTs BE105818 RAB14, member RAS oncogene family Rab14 94197 NM_053589 0006810 // transport // inferred from electronic annotation /// 0006895 // Golgi to endosome transport // traceable author statement /// 0007264 // small GTPase mediated signal transduction // non-traceable author statement /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // non-traceable author statement /// 0007589 // body fluid secretion // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // non-traceable author statement /// 0032880 // regulation of protein localization // inferred from direct assay /// 0032880 // regulation of protein localization // inferred from mutant phenotype /// 0045176 // apical protein localization // inferred from direct assay /// 0046907 // intracellular transport // non-traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005622 // intracellular // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005764 // lysosome // inferred from direct assay /// 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005795 // Golgi stack // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0030133 // transport vesicle // inferred from direct assay /// 0030140 // trans-Golgi network transport vesicle // inferred from direct assay /// 0042175 // nuclear membrane-endoplasmic reticulum network // inferred from direct assay /// 0042599 // lamellar body // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // inferred from direct assay /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0003924 // GTPase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // not recorded /// 0019003 // GDP binding // inferred from sequence or structural similarity /// 0019003 // GDP binding // inferred from electronic annotation 1397464_at AA901367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901367 /DB_XREF=gi:4233868 /DB_XREF=UI-R-A1-dw-d-06-0-UI.s1 /CLONE=UI-R-A1-dw-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.32572.1 /TIER=ConsEnd /STK=1 /UG=Rn.32572 /UG_TITLE=ESTs AA901367 1397465_at BF406475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406475 /DB_XREF=gi:11394450 /DB_XREF=UI-R-BJ2-bpt-d-02-0-UI.s1 /CLONE=UI-R-BJ2-bpt-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.61896.1 /TIER=ConsEnd /STK=1 /UG=Rn.61896 /UG_TITLE=ESTs BF406475 1397466_at BI292573 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292573 /DB_XREF=gi:14953202 /DB_XREF=UI-R-DO0-ciw-i-02-0-UI.s1 /CLONE=UI-R-DO0-ciw-i-02-0-UI /FEA=EST /CNT=2 /TID=Rn.79328.1 /TIER=ConsEnd /STK=1 /UG=Rn.79328 /UG_TITLE=ESTs, Highly similar to translation initiation factor eIF3 p40 subunit (H.sapiens) BI292573 Eukaryotic translation initiation factor 3, subunit H Eif3h 299899 NM_198751 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // not recorded /// 0006413 // translational initiation // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from sequence or structural similarity /// 0043234 // protein complex // inferred from direct assay 0003743 // translation initiation factor activity // not recorded /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0032403 // protein complex binding // inferred from direct assay 1397467_at AW524703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524703 /DB_XREF=gi:7167088 /DB_XREF=UI-R-BO0-aib-d-07-0-UI.s1 /CLONE=UI-R-BO0-aib-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.45909.1 /TIER=ConsEnd /STK=1 /UG=Rn.45909 /UG_TITLE=ESTs AW524703 zinc finger protein 329 Zfp329 308361 NM_001107477 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1397468_at BI288527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288527 /DB_XREF=gi:14945201 /DB_XREF=UI-R-DK0-cdb-h-11-0-UI.s1 /CLONE=UI-R-DK0-cdb-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.75191.1 /TIER=ConsEnd /STK=1 /UG=Rn.75191 /UG_TITLE=ESTs, Weakly similar to T34105 hypothetical protein C17G10.8 - Caenorhabditis elegans (C.elegans) BI288527 hydroxysteroid dehydrogenase like 2 Hsdl2 313200 NM_001025697 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005777 // peroxisome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0032934 // sterol binding // inferred from electronic annotation 1397469_at BI296305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296305 /DB_XREF=gi:14960616 /DB_XREF=UI-R-DK0-cey-g-12-0-UI.s1 /CLONE=UI-R-DK0-cey-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.79807.1 /TIER=ConsEnd /STK=1 /UG=Rn.79807 /UG_TITLE=ESTs, Weakly similar to DMD MOUSE DYSTROPHIN (M.musculus) BI296305 0007050 // cell cycle arrest // inferred from electronic annotation 0005856 // cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1397470_at BE099883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099883 /DB_XREF=gi:8491766 /DB_XREF=UI-R-BJ1-atl-c-07-0-UI.s1 /CLONE=UI-R-BJ1-atl-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.49918.1 /TIER=ConsEnd /STK=1 /UG=Rn.49918 /UG_TITLE=ESTs BE099883 1397471_at AW520988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520988 /DB_XREF=gi:7163366 /DB_XREF=UI-R-BO0-agq-g-02-0-UI.s1 /CLONE=UI-R-BO0-agq-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.61022.1 /TIER=ConsEnd /STK=1 /UG=Rn.61022 /UG_TITLE=ESTs AW520988 Microtubule associated monoxygenase, calponin and LIM domain containing 2 Mical2 365352 NM_001139508 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397472_at AI454728 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454728 /DB_XREF=gi:4295755 /DB_XREF=UI-R-C2p-qj-d-05-0-UI.s1 /CLONE=UI-R-C2p-qj-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.72556.1 /TIER=ConsEnd /STK=1 /UG=Rn.72556 /UG_TITLE=ESTs AI454728 1397473_at AI029288 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029288 /DB_XREF=gi:4297531 /DB_XREF=UI-R-C0-iq-e-03-0-UI.s1 /CLONE=UI-R-C0-iq-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.43241.1 /TIER=ConsEnd /STK=1 /UG=Rn.43241 /UG_TITLE=ESTs AI029288 distrobrevin binding protein 1 Dtnbp1 641528 NM_001037664 0031175 // neuron projection development // inferred from sequence or structural similarity /// 0031532 // actin cytoskeleton reorganization // inferred from sequence or structural similarity /// 0048812 // neuron projection morphogenesis // inferred from sequence or structural similarity /// 0060159 // regulation of dopamine receptor signaling pathway // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // inferred from sequence or structural similarity /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from sequence or structural similarity /// 0030054 // cell junction // inferred from electronic annotation /// 0030426 // growth cone // inferred from sequence or structural similarity /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030672 // synaptic vesicle membrane // inferred from direct assay /// 0030672 // synaptic vesicle membrane // inferred from sequence or structural similarity /// 0030672 // synaptic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0033162 // melanosome membrane // inferred from electronic annotation /// 0033267 // axon part // inferred from sequence or structural similarity /// 0043005 // neuron projection // inferred from sequence or structural similarity /// 0043197 // dendritic spine // inferred from sequence or structural similarity /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation 1397474_at AI549177 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549177 /DB_XREF=gi:4466665 /DB_XREF=UI-R-C3-ts-e-04-0-UI.s1 /CLONE=UI-R-C3-ts-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.41710.1 /TIER=ConsEnd /STK=1 /UG=Rn.41710 /UG_TITLE=ESTs AI549177 1397475_at AW530171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530171 /DB_XREF=gi:7172585 /DB_XREF=UI-R-C4-ale-d-10-0-UI.s1 /CLONE=UI-R-C4-ale-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.68000.1 /TIER=ConsEnd /STK=1 /UG=Rn.68000 /UG_TITLE=ESTs AW530171 poly(A) polymerase gamma Papolg 305586 NM_001107244 0006350 // transcription // inferred from electronic annotation /// 0031123 // RNA 3'-end processing // inferred from electronic annotation /// 0043631 // RNA polyadenylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0004652 // polynucleotide adenylyltransferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1397476_at BM383386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383386 /DB_XREF=gi:18183439 /DB_XREF=UI-R-DM1-cka-m-07-0-UI.s1 /CLONE=UI-R-DM1-cka-m-07-0-UI /FEA=EST /CNT=2 /TID=Rn.65107.1 /TIER=ConsEnd /STK=1 /UG=Rn.65107 /UG_TITLE=ESTs, Weakly similar to TTK MOUSE DUAL SPECIFICITY PROTEIN KINASE TTK (M.musculus) BM383386 Ttk protein kinase Ttk 315852 NM_001108172 0006468 // protein phosphorylation // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1397477_at AA998512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998512 /DB_XREF=gi:4290371 /DB_XREF=UI-R-C0-ie-h-12-0-UI.s1 /CLONE=UI-R-C0-ie-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.44170.1 /TIER=ConsEnd /STK=1 /UG=Rn.44170 /UG_TITLE=ESTs AA998512 1397478_at AI030187 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030187 /DB_XREF=gi:3248013 /DB_XREF=UI-R-C0-it-e-10-0-UI.s1 /CLONE=UI-R-C0-it-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.64535.1 /TIER=ConsEnd /STK=1 /UG=Rn.64535 /UG_TITLE=ESTs AI030187 Prohibitin 2 Phb2 114766 NM_001013035 0006350 // transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0033147 // negative regulation of estrogen receptor signaling pathway // inferred from electronic annotation /// 0033147 // negative regulation of estrogen receptor signaling pathway // not recorded /// 0033600 // negative regulation of mammary gland epithelial cell proliferation // inferred from electronic annotation /// 0033600 // negative regulation of mammary gland epithelial cell proliferation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0060744 // mammary gland branching involved in thelarche // inferred from electronic annotation /// 0060744 // mammary gland branching involved in thelarche // not recorded /// 0060749 // mammary gland alveolus development // inferred from electronic annotation /// 0060749 // mammary gland alveolus development // not recorded /// 0060762 // regulation of branching involved in mammary gland duct morphogenesis // inferred from electronic annotation /// 0060762 // regulation of branching involved in mammary gland duct morphogenesis // not recorded 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0016566 // specific transcriptional repressor activity // inferred from sequence or structural similarity /// 0016566 // specific transcriptional repressor activity // inferred from electronic annotation 1397479_at BE113370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113370 /DB_XREF=gi:8505475 /DB_XREF=UI-R-BJ1-awe-e-09-0-UI.s1 /CLONE=UI-R-BJ1-awe-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.48952.1 /TIER=ConsEnd /STK=1 /UG=Rn.48952 /UG_TITLE=ESTs, Weakly similar to T23984 hypothetical protein R06F6.4 - Caenorhabditis elegans (C.elegans) BE113370 SET and MYND domain containing 1 Smyd1 297333 NM_001106595 0006338 // chromatin remodeling // not recorded /// 0007507 // heart development // not recorded /// 0016481 // negative regulation of transcription // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397480_at BF548515 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548515 /DB_XREF=gi:11639622 /DB_XREF=UI-R-A0-ap-h-05-0-UI.r1 /CLONE=UI-R-A0-ap-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.32223.1 /TIER=ConsEnd /STK=1 /UG=Rn.32223 /UG_TITLE=ESTs BF548515 1397481_at BE120751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120751 /DB_XREF=gi:8512896 /DB_XREF=UI-R-BS1-azs-f-02-0-UI.s1 /CLONE=UI-R-BS1-azs-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.33283.1 /TIER=ConsEnd /STK=1 /UG=Rn.33283 /UG_TITLE=ESTs BE120751 1397482_at AI502073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502073 /DB_XREF=gi:4399924 /DB_XREF=UI-R-C1-kb-h-03-0-UI.s1 /CLONE=UI-R-C1-kb-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.35606.1 /TIER=ConsEnd /STK=1 /UG=Rn.35606 /UG_TITLE=ESTs AI502073 1397483_at BE104832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104832 /DB_XREF=gi:8496932 /DB_XREF=UI-R-BX0-aru-b-12-0-UI.s1 /CLONE=UI-R-BX0-aru-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.50687.1 /TIER=ConsEnd /STK=1 /UG=Rn.50687 /UG_TITLE=ESTs BE104832 1397484_at BF394767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394767 /DB_XREF=gi:11379725 /DB_XREF=UI-R-CA0-bge-g-02-0-UI.s1 /CLONE=UI-R-CA0-bge-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.58349.1 /TIER=ConsEnd /STK=1 /UG=Rn.58349 /UG_TITLE=ESTs, Weakly similar to SD22_YEAST PROTEIN PHOSPHATASES PP1 REGULATORY SUBUNIT SDS22 (S.cerevisiae) BF394767 dynein, axonemal, light chain 1 Dnal1 685664 NM_001109477 0005515 // protein binding // inferred from electronic annotation 1397485_at BI298636 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298636 /DB_XREF=gi:14974916 /DB_XREF=UI-R-CV2-chm-a-02-0-UI.s1 /CLONE=UI-R-CV2-chm-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.76769.1 /TIER=ConsEnd /STK=1 /UG=Rn.76769 /UG_TITLE=ESTs BI298636 1397486_x_at BF404567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404567 /DB_XREF=gi:11392507 /DB_XREF=UI-R-CA1-big-e-09-0-UI.s1 /CLONE=UI-R-CA1-big-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.60538.1 /TIER=ConsEnd /STK=1 /UG=Rn.60538 /UG_TITLE=ESTs BF404567 1397487_at AW535011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535011 /DB_XREF=gi:7177425 /DB_XREF=UI-R-BS0-aoa-b-08-0-UI.s1 /CLONE=UI-R-BS0-aoa-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.51113.1 /TIER=ConsEnd /STK=1 /UG=Rn.51113 /UG_TITLE=ESTs AW535011 X-prolyl aminopeptidase (aminopeptidase P) 3, putative Xpnpep3 685823 NM_001130582 0009987 // cellular process // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from electronic annotation 1397488_at BF386747 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386747 /DB_XREF=gi:11371571 /DB_XREF=UI-R-CA1-bbh-a-02-0-UI.s1 /CLONE=UI-R-CA1-bbh-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.62042.1 /TIER=ConsEnd /STK=1 /UG=Rn.62042 /UG_TITLE=ESTs, Highly similar to MSS4 RAT GUANINE NUCLEOTIDE EXCHANGE FACTOR MSS4 (R.norvegicus) BF386747 similar to Mss4 protein RGD1563962 499636 XM_001066566 /// XM_574959 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded 1397489_at BE099670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099670 /DB_XREF=gi:8491549 /DB_XREF=UI-R-BJ1-atk-a-01-0-UI.s1 /CLONE=UI-R-BJ1-atk-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.49889.1 /TIER=ConsEnd /STK=1 /UG=Rn.49889 /UG_TITLE=ESTs BE099670 1397490_at AI237039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237039 /DB_XREF=gi:3830545 /DB_XREF=EST233601 /CLONE=ROVDN89 /FEA=EST /CNT=2 /TID=Rn.55777.1 /TIER=ConsEnd /STK=1 /UG=Rn.55777 /UG_TITLE=ESTs, Weakly similar to T46356 hypothetical protein DKFZp434G2016.1 (H.sapiens) AI237039 spermatogenesis associated 13 Spata13 305938 NM_001191686 /// XM_001065113 /// XM_224253 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1397491_at BF396472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396472 /DB_XREF=gi:11381444 /DB_XREF=UI-R-BS2-bdy-e-10-0-UI.s1 /CLONE=UI-R-BS2-bdy-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.63779.1 /TIER=ConsEnd /STK=1 /UG=Rn.63779 /UG_TITLE=ESTs BF396472 1-acylglycerol-3-phosphate O-acyltransferase 3 Agpat3 294324 NM_001106378 0008152 // metabolic process // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0008415 // acyltransferase activity // inferred from electronic annotation /// 0046027 // phospholipid:diacylglycerol acyltransferase activity // not recorded 1397492_at BF410962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410962 /DB_XREF=gi:11398937 /DB_XREF=UI-R-CN0-bmi-a-12-0-UI.s1 /CLONE=UI-R-CN0-bmi-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.33799.1 /TIER=ConsEnd /STK=1 /UG=Rn.33799 /UG_TITLE=ESTs BF410962 LIM domain 7 Lmo7 361084 NM_001001515 0016337 // cell-cell adhesion // inferred from expression pattern 0005913 // cell-cell adherens junction // inferred from direct assay /// 0016324 // apical plasma membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042805 // actinin binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1397493_at BE101026 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101026 /DB_XREF=gi:8492931 /DB_XREF=UI-R-BJ1-aty-c-05-0-UI.s1 /CLONE=UI-R-BJ1-aty-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.50023.1 /TIER=ConsEnd /STK=1 /UG=Rn.50023 /UG_TITLE=ESTs, Highly similar to PAP_HUMAN POLY(A) POLYMERASE (H.sapiens) BE101026 poly (A) polymerase alpha Papola 314417 NM_001108056 0006350 // transcription // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0031123 // RNA 3'-end processing // inferred from electronic annotation /// 0043631 // RNA polyadenylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0004652 // polynucleotide adenylyltransferase activity // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation 1397494_at BF401060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401060 /DB_XREF=gi:11389035 /DB_XREF=UI-R-CA0-bgh-b-08-0-UI.s1 /CLONE=UI-R-CA0-bgh-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.57473.1 /TIER=ConsEnd /STK=1 /UG=Rn.57473 /UG_TITLE=ESTs BF401060 1397495_at BE102358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102358 /DB_XREF=gi:8494457 /DB_XREF=UI-R-BT1-aql-f-03-0-UI.s1 /CLONE=UI-R-BT1-aql-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.64941.1 /TIER=ConsEnd /STK=1 /UG=Rn.64941 /UG_TITLE=ESTs BE102358 1397496_at BE108753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108753 /DB_XREF=gi:8500858 /DB_XREF=UI-R-BS1-ayy-a-11-0-UI.s1 /CLONE=UI-R-BS1-ayy-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.74930.1 /TIER=ConsEnd /STK=1 /UG=Rn.74930 /UG_TITLE=ESTs BE108753 1397497_at BF391164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391164 /DB_XREF=gi:11376011 /DB_XREF=UI-R-CA1-bcq-a-09-0-UI.s1 /CLONE=UI-R-CA1-bcq-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.47607.1 /TIER=ConsEnd /STK=1 /UG=Rn.47607 /UG_TITLE=ESTs BF391164 1397498_at AI547846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547846 /DB_XREF=gi:4465334 /DB_XREF=UI-R-C3-sk-f-02-0-UI.s1 /CLONE=UI-R-C3-sk-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.44107.1 /TIER=ConsEnd /STK=1 /UG=Rn.44107 /UG_TITLE=ESTs AI547846 1397499_at AI170878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170878 /DB_XREF=gi:3710918 /DB_XREF=EST216819 /CLONE=RMUBC89 /FEA=EST /CNT=2 /TID=Rn.29436.1 /TIER=ConsEnd /STK=1 /UG=Rn.29436 /UG_TITLE=ESTs AI170878 1397500_x_at AA818718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818718 /DB_XREF=gi:4227398 /DB_XREF=UI-R-A0-ay-e-04-0-UI.s1 /CLONE=UI-R-A0-ay-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.34213.1 /TIER=ConsEnd /STK=1 /UG=Rn.34213 /UG_TITLE=ESTs AA818718 1397501_at AA945807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945807 /DB_XREF=gi:3105723 /DB_XREF=EST201306 /CLONE=RLUAU47 /FEA=EST /CNT=2 /TID=Rn.55941.1 /TIER=ConsEnd /STK=1 /UG=Rn.55941 /UG_TITLE=ESTs AA945807 wingless-type MMTV integration site family, member 11 Wnt11 140584 NM_080401 0001649 // osteoblast differentiation // not recorded /// 0003151 // outflow tract morphogenesis // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0007223 // Wnt receptor signaling pathway, calcium modulating pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0010628 // positive regulation of gene expression // not recorded /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0030154 // cell differentiation // inferred from expression pattern /// 0030282 // bone mineralization // not recorded /// 0030308 // negative regulation of cell growth // not recorded /// 0030325 // adrenal gland development // not recorded /// 0030335 // positive regulation of cell migration // not recorded /// 0030336 // negative regulation of cell migration // not recorded /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032320 // positive regulation of Ras GTPase activity // not recorded /// 0032915 // positive regulation of transforming growth factor-beta2 production // not recorded /// 0034394 // protein localization at cell surface // not recorded /// 0035567 // non-canonical Wnt receptor signaling pathway // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0048706 // embryonic skeletal system development // not recorded /// 0048844 // artery morphogenesis // not recorded /// 0051496 // positive regulation of stress fiber assembly // not recorded /// 0060021 // palate development // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060197 // cloacal septation // not recorded /// 0060412 // ventricular septum morphogenesis // not recorded /// 0060484 // lung-associated mesenchyme development // not recorded /// 0060548 // negative regulation of cell death // not recorded /// 0060675 // ureteric bud morphogenesis // not recorded /// 0061101 // neuroendocrine cell differentiation // not recorded /// 0070830 // tight junction assembly // not recorded /// 0072177 // mesonephric duct development // not recorded /// 0072201 // negative regulation of mesenchymal cell proliferation // not recorded /// 0090037 // positive regulation of protein kinase C signaling cascade // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded /// 0090272 // negative regulation of fibroblast growth factor production // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0031012 // extracellular matrix // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0005099 // Ras GTPase activator activity // not recorded /// 0010843 // promoter binding // not recorded /// 0016563 // transcription activator activity // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0030295 // protein kinase activator activity // not recorded 1397502_at AI501394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501394 /DB_XREF=gi:4399245 /DB_XREF=UI-R-C2p-sa-e-04-0-UI.s1 /CLONE=UI-R-C2p-sa-e-04-0-UI /FEA=EST /CNT=2 /TID=Rn.35345.1 /TIER=ConsEnd /STK=1 /UG=Rn.35345 /UG_TITLE=ESTs AI501394 1397503_at AI555886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555886 /DB_XREF=gi:4488249 /DB_XREF=UI-R-C2p-qx-e-02-0-UI.s1 /CLONE=UI-R-C2p-qx-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.39286.1 /TIER=ConsEnd /STK=1 /UG=Rn.39286 /UG_TITLE=ESTs AI555886 1397504_at BE119297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119297 /DB_XREF=gi:8511402 /DB_XREF=UI-R-CA0-baa-g-05-0-UI.s1 /CLONE=UI-R-CA0-baa-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.62586.1 /TIER=ConsEnd /STK=1 /UG=Rn.62586 /UG_TITLE=ESTs BE119297 WD repeat and SOCS box-containing 2 Wsb2 288692 NM_001007616 0023034 // intracellular signaling pathway // inferred from electronic annotation 1397505_at BE115743 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115743 /DB_XREF=gi:8507848 /DB_XREF=UI-R-CA0-axs-d-05-0-UI.s1 /CLONE=UI-R-CA0-axs-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.69370.1 /TIER=ConsEnd /STK=1 /UG=Rn.69370 /UG_TITLE=ESTs, Moderately similar to KF1B_RAT KINESIN-LIKE PROTEIN KIF1B (R.norvegicus) BE115743 kinesin family member 1A Kif1a 363288 XM_001070053 /// XM_001070204 /// XM_002727250 /// XM_343630 0007018 // microtubule-based movement // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1397506_at AI101200 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101200 /DB_XREF=gi:4133992 /DB_XREF=EST210489 /CLONE=RBRBG80 /FEA=EST /CNT=2 /TID=Rn.56289.1 /TIER=ConsEnd /STK=1 /UG=Rn.56289 /UG_TITLE=ESTs AI101200 frataxin Fxn 499335 NM_001191952 /// XM_001078791 /// XM_574642 0006119 // oxidative phosphorylation // not recorded /// 0006783 // heme biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006826 // iron ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // not recorded /// 0006879 // cellular iron ion homeostasis // non-traceable author statement /// 0007005 // mitochondrion organization // not recorded /// 0007628 // adult walking behavior // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0009060 // aerobic respiration // not recorded /// 0009792 // embryo development ending in birth or egg hatching // not recorded /// 0010039 // response to iron ion // not recorded /// 0010722 // regulation of ferrochelatase activity // not recorded /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016226 // iron-sulfur cluster assembly // not recorded /// 0016540 // protein autoprocessing // not recorded /// 0018283 // iron incorporation into metallo-sulfur cluster // not recorded /// 0019230 // proprioception // not recorded /// 0030307 // positive regulation of cell growth // not recorded /// 0040015 // negative regulation of multicellular organism growth // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045773 // positive regulation of axon extension // inferred from mutant phenotype /// 0046621 // negative regulation of organ growth // not recorded /// 0048554 // positive regulation of metalloenzyme activity // not recorded /// 0051347 // positive regulation of transferase activity // not recorded /// 0051349 // positive regulation of lyase activity // not recorded /// 0051353 // positive regulation of oxidoreductase activity // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded /// 0008198 // ferrous iron binding // not recorded /// 0008199 // ferric iron binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016530 // metallochaperone activity // non-traceable author statement /// 0019899 // enzyme binding // inferred from physical interaction /// 0034986 // iron chaperone activity // not recorded /// 0051536 // iron-sulfur cluster binding // not recorded /// 0051537 // 2 iron, 2 sulfur cluster binding // not recorded 1397507_at AI029577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029577 /DB_XREF=gi:4299516 /DB_XREF=UI-R-C0-ix-f-08-0-UI.s1 /CLONE=UI-R-C0-ix-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.38834.1 /TIER=ConsEnd /STK=1 /UG=Rn.38834 /UG_TITLE=ESTs, Weakly similar to GRBE RAT GROWTH FACTOR RECEPTOR-BOUND PROTEIN 14 (R.norvegicus) AI029577 amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein Apbb1ip 307171 NM_001100577 0007165 // signal transduction // inferred from electronic annotation 0005829 // cytosol // not recorded 1397508_at BE106682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106682 /DB_XREF=gi:8498784 /DB_XREF=UI-R-BO1-asq-h-12-0-UI.s1 /CLONE=UI-R-BO1-asq-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.61086.1 /TIER=ConsEnd /STK=1 /UG=Rn.61086 /UG_TITLE=ESTs, Weakly similar to S71758 DEAD box protein MrDb, Myc-regulated (H.sapiens) BE106682 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 Ddx18 308490 NM_001006996 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1397509_x_at BI289049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289049 /DB_XREF=gi:14946221 /DB_XREF=UI-R-DK0-cdh-h-10-0-UI.s1 /CLONE=UI-R-DK0-cdh-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.78985.1 /TIER=ConsEnd /STK=1 /UG=Rn.78985 /UG_TITLE=ESTs, Moderately similar to JC6540 placenta specific-homeobox protein - mouse (M.musculus) BI289049 reproductive homeobox 9 Rhox9 298352 NM_001024874 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1397510_at BE114399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114399 /DB_XREF=gi:8506504 /DB_XREF=UI-R-CA0-axp-g-09-0-UI.s1 /CLONE=UI-R-CA0-axp-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.52369.1 /TIER=ConsEnd /STK=1 /UG=Rn.52369 /UG_TITLE=ESTs BE114399 1397511_at BM387179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387179 /DB_XREF=gi:18187232 /DB_XREF=UI-R-CN1-cji-l-19-0-UI.s1 /CLONE=UI-R-CN1-cji-l-19-0-UI /FEA=EST /CNT=2 /TID=Rn.80963.1 /TIER=ConsEnd /STK=1 /UG=Rn.80963 /UG_TITLE=ESTs BM387179 tweety homolog 1 (Drosophila) Ttyh1 292597 NM_001106225 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0031589 // cell-substrate adhesion // not recorded /// 0046847 // filopodium assembly // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031527 // filopodium membrane // not recorded /// 0032433 // filopodium tip // not recorded /// 0034707 // chloride channel complex // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation 1397512_at BI281965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281965 /DB_XREF=gi:14932246 /DB_XREF=UI-R-CU0s-cbu-g-08-0-UI.s1 /CLONE=UI-R-CU0s-cbu-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.78249.1 /TIER=ConsEnd /STK=1 /UG=Rn.78249 /UG_TITLE=ESTs, Moderately similar to VP41_HUMAN VACUOLAR ASSEMBLY PROTEIN VPS41 HOMOLOG (H.sapiens) BI281965 similar to Vps41 protein RGD1560511 306991 NM_001107355 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1397513_at BE097409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097409 /DB_XREF=gi:8488340 /DB_XREF=UI-R-BO1-apx-b-06-0-UI.s1 /CLONE=UI-R-BO1-apx-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.72394.1 /TIER=ConsEnd /STK=1 /UG=Rn.72394 /UG_TITLE=ESTs, Weakly similar to RNA-binding protein Raly (M.musculus) BE097409 1397514_at BF283101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283101 /DB_XREF=gi:11214171 /DB_XREF=EST447692 /CLONE=RGIDX53 /FEA=EST /CNT=17 /TID=Rn.56010.1 /TIER=ConsEnd /STK=0 /UG=Rn.56010 /UG_TITLE=ESTs BF283101 1397515_at BF561001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF561001 /DB_XREF=gi:11670689 /DB_XREF=UI-R-E1-fo-h-05-0-UI.r1 /CLONE=UI-R-E1-fo-h-05-0-UI /FEA=EST /CNT=14 /TID=Rn.8640.1 /TIER=ConsEnd /STK=0 /UG=Rn.8640 /UG_TITLE=ESTs BF561001 beta-1,4-N-acetyl-galactosaminyl transferase 4 B4galnt4 309105 NM_001107562 0032580 // Golgi cisterna membrane // inferred from electronic annotation 0008376 // acetylgalactosaminyltransferase activity // not recorded /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1397516_at AI412988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412988 /DB_XREF=gi:4256492 /DB_XREF=EST241288 /CLONE=RBREC96 /FEA=EST /CNT=12 /TID=Rn.18486.1 /TIER=ConsEnd /STK=0 /UG=Rn.18486 /UG_TITLE=ESTs, Weakly similar to AHPCTSA protein (Caenorhabditis elegans) (C.elegans) AI412988 asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae) Alg2 313231 NM_001100710 0006488 // dolichol-linked oligosaccharide biosynthetic process // inferred from electronic annotation /// 0006488 // dolichol-linked oligosaccharide biosynthetic process // not recorded /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0033577 // protein glycosylation in endoplasmic reticulum // inferred from electronic annotation /// 0033577 // protein glycosylation in endoplasmic reticulum // not recorded /// 0051592 // response to calcium ion // inferred from electronic annotation /// 0051592 // response to calcium ion // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0000033 // alpha-1,3-mannosyltransferase activity // inferred from electronic annotation /// 0000033 // alpha-1,3-mannosyltransferase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0043495 // protein anchor // inferred from electronic annotation /// 0043495 // protein anchor // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded /// 0048306 // calcium-dependent protein binding // inferred from electronic annotation /// 0048306 // calcium-dependent protein binding // not recorded 1397517_at BF404640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404640 /DB_XREF=gi:11392615 /DB_XREF=UI-R-CA1-bih-h-07-0-UI.s1 /CLONE=UI-R-CA1-bih-h-07-0-UI /FEA=EST /CNT=11 /TID=Rn.22255.1 /TIER=ConsEnd /STK=0 /UG=Rn.22255 /UG_TITLE=ESTs, Moderately similar to T46422 hypothetical protein DKFZp434M2023.1 (H.sapiens) BF404640 formin binding protein 4 Fnbp4 311183 NM_001013159 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1397518_at BG372421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372421 /DB_XREF=gi:13268958 /DB_XREF=UI-R-CV1-bsc-e-07-0-UI.s1 /CLONE=UI-R-CV1-bsc-e-07-0-UI /FEA=EST /CNT=10 /TID=Rn.73420.1 /TIER=ConsEnd /STK=0 /UG=Rn.73420 /UG_TITLE=ESTs BG372421 1397519_at BF547596 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF547596 /DB_XREF=gi:11638703 /DB_XREF=UI-R-A0-aw-f-04-0-UI.r1 /CLONE=UI-R-A0-aw-f-04-0-UI /FEA=EST /CNT=10 /TID=Rn.25131.2 /TIER=ConsEnd /STK=0 /UG=Rn.25131 /UG_TITLE=ESTs BF547596 adiponectin receptor 2 Adipor2 312670 NM_001037979 0007165 // signal transduction // not recorded /// 0007507 // heart development // inferred from expression pattern /// 0007565 // female pregnancy // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0030308 // negative regulation of cell growth // inferred from mutant phenotype /// 0046326 // positive regulation of glucose import // inferred from mutant phenotype 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1397520_at BG672378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672378 /DB_XREF=gi:13894477 /DB_XREF=DRNCGD09 /CLONE=DRNCGD09 /FEA=EST /CNT=9 /TID=Rn.67001.1 /TIER=ConsEnd /STK=0 /UG=Rn.67001 /UG_TITLE=ESTs, Weakly similar to A44453 translation initiation factor eIF-4 gamma (H.sapiens) BG672378 eukaryotic translation initiation factor 4, gamma 2 /// eukaryotic translation initiation factor 4, gamma 2, pseudogene 1 Eif4g2 /// Eif4g2-ps1 171362 /// 361628 NM_001017374 /// XR_007294 /// XR_086333 0006446 // regulation of translational initiation // not recorded /// 0016070 // RNA metabolic process // inferred from electronic annotation /// 0045948 // positive regulation of translational initiation // not recorded 0005737 // cytoplasm // not recorded /// 0016281 // eukaryotic translation initiation factor 4F complex // not recorded 0003743 // translation initiation factor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008135 // translation factor activity, nucleic acid binding // not recorded 1397521_at BF281905 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281905 /DB_XREF=gi:11212975 /DB_XREF=EST446496 /CLONE=RGIBH85 /FEA=EST /CNT=9 /TID=Rn.22332.1 /TIER=ConsEnd /STK=0 /UG=Rn.22332 /UG_TITLE=ESTs, Moderately similar to acetolactate synthase homolog (H.sapiens) BF281905 ilvB (bacterial acetolactate synthase)-like Ilvbl 362843 NM_001108738 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0030976 // thiamin pyrophosphate binding // inferred from electronic annotation 1397522_at BF554377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554377 /DB_XREF=gi:11664107 /DB_XREF=UI-R-C1-kp-d-12-0-UI.r1 /CLONE=UI-R-C1-kp-d-12-0-UI /FEA=EST /CNT=9 /TID=Rn.39328.1 /TIER=ConsEnd /STK=0 /UG=Rn.39328 /UG_TITLE=ESTs, Weakly similar to MTR7_MOUSE MYOTUBULARIN RELATED PROTEIN 7 (M.musculus) BF554377 SET binding factor 1 Sbf1 300147 XM_001054780 /// XM_217021 0007283 // spermatogenesis // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation 0016791 // phosphatase activity // inferred from electronic annotation 1397523_at BF554118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554118 /DB_XREF=gi:11663848 /DB_XREF=UI-R-C1-jt-e-09-0-UI.r1 /CLONE=UI-R-C1-jt-e-09-0-UI /FEA=EST /CNT=9 /TID=Rn.40930.1 /TIER=ConsEnd /STK=0 /UG=Rn.40930 /UG_TITLE=ESTs, Weakly similar to T09123 hybrid receptor SorLA precursor - mouse (M.musculus) BF554118 low density lipoprotein receptor-related protein 11 Lrp11 292462 NM_001106217 1397524_at AA942689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA942689 /DB_XREF=gi:3102605 /DB_XREF=EST198188 /CLONE=RBRAA20 /FEA=EST /CNT=8 /TID=Rn.44862.1 /TIER=ConsEnd /STK=0 /UG=Rn.44862 /UG_TITLE=ESTs AA942689 1397525_at AA848370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848370 /DB_XREF=gi:2935910 /DB_XREF=EST191130 /CLONE=RKIAB60 /FEA=EST /CNT=8 /TID=Rn.55726.1 /TIER=ConsEnd /STK=0 /UG=Rn.55726 /UG_TITLE=ESTs AA848370 1397526_at AI412068 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412068 /DB_XREF=gi:4255572 /DB_XREF=EST240362 /CLONE=RKIEH76 /FEA=EST /CNT=8 /TID=Rn.4195.1 /TIER=ConsEnd /STK=0 /UG=Rn.4195 /UG_TITLE=ESTs, Weakly similar to B34252 acyl-CoA dehydrogenase (R.norvegicus) AI412068 glutaryl-Coenzyme A dehydrogenase Gcdh 364975 NM_001108896 0006637 // acyl-CoA metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0019395 // fatty acid oxidation // inferred from direct assay /// 0046949 // fatty-acyl-CoA biosynthetic process // inferred from direct assay /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded 0000062 // acyl-CoA binding // inferred from direct assay /// 0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0004361 // glutaryl-CoA dehydrogenase activity // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016627 // oxidoreductase activity, acting on the CH-CH group of donors // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from direct assay /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation 1397527_at AI578294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578294 /DB_XREF=gi:4562670 /DB_XREF=UI-R-G0-ur-b-01-0-UI.s3 /CLONE=UI-R-G0-ur-b-01-0-UI /FEA=EST /CNT=8 /TID=Rn.39372.1 /TIER=ConsEnd /STK=0 /UG=Rn.39372 /UG_TITLE=ESTs, Weakly similar to A49618 probable ataxia-telangiectasia group D protein (H.sapiens) AI578294 tripartite motif-containing 47 Trim47 690374 NM_001109585 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397528_at BE112252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112252 /DB_XREF=gi:8504357 /DB_XREF=UI-R-BJ1-avl-e-04-0-UI.s1 /CLONE=UI-R-BJ1-avl-e-04-0-UI /FEA=EST /CNT=9 /TID=Rn.41804.1 /TIER=ConsEnd /STK=0 /UG=Rn.41804 /UG_TITLE=ESTs BE112252 1397529_at BI296754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296754 /DB_XREF=gi:14961497 /DB_XREF=UI-R-CV2-cgv-h-09-0-UI.s1 /CLONE=UI-R-CV2-cgv-h-09-0-UI /FEA=EST /CNT=7 /TID=Rn.49255.1 /TIER=ConsEnd /STK=0 /UG=Rn.49255 /UG_TITLE=ESTs BI296754 DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 Ddx17 315133 NM_001015018 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1397530_at BF550362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550362 /DB_XREF=gi:11660092 /DB_XREF=UI-R-E0-cf-h-04-0-UI.r1 /CLONE=UI-R-E0-cf-h-04-0-UI /FEA=EST /CNT=7 /TID=Rn.22643.1 /TIER=ConsEnd /STK=0 /UG=Rn.22643 /UG_TITLE=ESTs, Weakly similar to NP14 RAT 140 KD NUCLEOLAR PHOSPHOPROTEIN (R.norvegicus) BF550362 Treacher Collins-Franceschetti syndrome 1 homolog (human) Tcof1 291571 NM_001106143 0042790 // transcription of nuclear rRNA large RNA polymerase I transcript // not recorded 0005730 // nucleolus // not recorded 0005515 // protein binding // not recorded 1397531_at BF522208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522208 /DB_XREF=gi:11630175 /DB_XREF=UI-R-C2p-ns-a-10-0-UI.r1 /CLONE=UI-R-C2p-ns-a-10-0-UI /FEA=EST /CNT=7 /TID=Rn.38208.1 /TIER=ConsEnd /STK=0 /UG=Rn.38208 /UG_TITLE=ESTs BF522208 1397532_at BG668550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668550 /DB_XREF=gi:13890472 /DB_XREF=DRN04E11 /CLONE=DRN04E11 /FEA=EST /CNT=7 /TID=Rn.35902.1 /TIER=ConsEnd /STK=0 /UG=Rn.35902 /UG_TITLE=ESTs, Weakly similar to B0414.8.p (Caenorhabditis elegans) (C.elegans) BG668550 Similar to chromosome 11 open reading frame2 RGD1560544 293689 NM_001106328 1397533_at AW140719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW140719 /DB_XREF=gi:6160473 /DB_XREF=EST290714 /CLONE=RGIAP53 /FEA=EST /CNT=7 /TID=Rn.7775.1 /TIER=ConsEnd /STK=0 /UG=Rn.7775 /UG_TITLE=ESTs, Weakly similar to T12B3.4.p (Caenorhabditis elegans) (C.elegans) AW140719 MOB1, Mps One Binder kinase activator-like 1A (yeast) Mobkl1a 360920 NM_001108357 0035329 // hippo signaling cascade // not recorded /// 0046777 // protein autophosphorylation // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0019209 // kinase activator activity // not recorded /// 0019900 // kinase binding // not recorded 1397534_at AW918914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918914 /DB_XREF=gi:8084701 /DB_XREF=EST350218 /CLONE=RGIFA29 /FEA=EST /CNT=7 /TID=Rn.49800.2 /TIER=ConsEnd /STK=0 /UG=Rn.49800 /UG_TITLE=ESTs, Weakly similar to S42368 guanine nucleotide releasing factor homolog - Caenorhabditis elegans (C.elegans) AW918914 1397535_at BF555544 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555544 /DB_XREF=gi:11665274 /DB_XREF=UI-R-A1-dq-a-06-0-UI.r1 /CLONE=UI-R-A1-dq-a-06-0-UI /FEA=EST /CNT=8 /TID=Rn.49233.1 /TIER=ConsEnd /STK=0 /UG=Rn.49233 /UG_TITLE=ESTs BF555544 membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5) Mpp5 314259 NM_001108034 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1397536_at BF564825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564825 /DB_XREF=gi:11674555 /DB_XREF=UI-R-BS0-aml-d-03-0-UI.r1 /CLONE=UI-R-BS0-aml-d-03-0-UI /FEA=EST /CNT=7 /TID=Rn.48649.2 /TIER=ConsEnd /STK=0 /UG=Rn.48649 /UG_TITLE=ESTs BF564825 similar to KIAA0833 protein Camta1 362665 NM_001195559 /// NM_001195560 /// XM_002726619 /// XM_002729575 0005634 // nucleus // inferred from electronic annotation 0005516 // calmodulin binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1397537_at BG665530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665530 /DB_XREF=gi:13887452 /DB_XREF=DRACEC03 /CLONE=DRACEC03 /FEA=EST /CNT=7 /TID=Rn.78670.1 /TIER=ConsEnd /STK=0 /UG=Rn.78670 /UG_TITLE=ESTs BG665530 similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) LOC501091 501091 XM_576506 1397538_at BF407593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407593 /DB_XREF=gi:11395573 /DB_XREF=UI-R-BJ2-bqu-b-11-0-UI.s1 /CLONE=UI-R-BJ2-bqu-b-11-0-UI /FEA=EST /CNT=7 /TID=Rn.30342.1 /TIER=ConsEnd /STK=0 /UG=Rn.30342 /UG_TITLE=ESTs BF407593 TBC1 domain family, member 30 Tbc1d30 299824 XM_001081058 /// XM_235191 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation 1397539_at H34382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H34382 /DB_XREF=gi:979799 /DB_XREF=EST111288 /FEA=EST /CNT=7 /TID=Rn.33221.1 /TIER=ConsEnd /STK=0 /UG=Rn.33221 /UG_TITLE=ESTs, Weakly similar to TRHY_HUMAN TRICHOHYALI (H.sapiens) H34382 inner centromere protein Incenp 293733 NM_001106335 0000910 // cytokinesis // not recorded /// 0007059 // chromosome segregation // not recorded 0000775 // chromosome, centromeric region // not recorded /// 0000776 // kinetochore // not recorded /// 0000795 // synaptonemal complex // not recorded /// 0000801 // central element // not recorded /// 0005721 // centromeric heterochromatin // not recorded /// 0005819 // spindle // not recorded /// 0030496 // midbody // not recorded /// 0043234 // protein complex // not recorded 0005515 // protein binding // not recorded 1397540_at BF398168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398168 /DB_XREF=gi:11383154 /DB_XREF=UI-R-BS2-ben-c-01-0-UI.s1 /CLONE=UI-R-BS2-ben-c-01-0-UI /FEA=EST /CNT=6 /TID=Rn.26910.1 /TIER=ConsEnd /STK=0 /UG=Rn.26910 /UG_TITLE=ESTs BF398168 1397541_at BG671148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671148 /DB_XREF=gi:13893247 /DB_XREF=DRNBMB09 /CLONE=DRNBMB09 /FEA=EST /CNT=6 /TID=Rn.38701.1 /TIER=ConsEnd /STK=0 /UG=Rn.38701 /UG_TITLE=ESTs BG671148 twisted gastrulation homolog 1 (Drosophila) Twsg1 363294 NM_001108811 0001503 // ossification // not recorded /// 0001707 // mesoderm formation // not recorded /// 0007435 // salivary gland morphogenesis // not recorded /// 0009790 // embryo development // not recorded /// 0009888 // tissue development // not recorded /// 0030097 // hemopoiesis // not recorded /// 0030154 // cell differentiation // not recorded /// 0030509 // BMP signaling pathway // not recorded /// 0030513 // positive regulation of BMP signaling pathway // not recorded /// 0030514 // negative regulation of BMP signaling pathway // not recorded /// 0030900 // forebrain development // not recorded /// 0043010 // camera-type eye development // not recorded /// 0045668 // negative regulation of osteoblast differentiation // not recorded 0005615 // extracellular space // not recorded 0005515 // protein binding // not recorded 1397542_at AI137472 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137472 /DB_XREF=gi:3638249 /DB_XREF=UI-R-C2p-ol-e-07-0-UI.s1 /CLONE=UI-R-C2p-ol-e-07-0-UI /FEA=EST /CNT=6 /TID=Rn.27433.1 /TIER=ConsEnd /STK=0 /UG=Rn.27433 /UG_TITLE=ESTs AI137472 1397543_at AW526679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526679 /DB_XREF=gi:7169093 /DB_XREF=UI-R-BO1-ajd-g-06-0-UI.s1 /CLONE=UI-R-BO1-ajd-g-06-0-UI /FEA=EST /CNT=6 /TID=Rn.33718.1 /TIER=ConsEnd /STK=0 /UG=Rn.33718 /UG_TITLE=ESTs AW526679 1397544_at BF404617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404617 /DB_XREF=gi:11392592 /DB_XREF=UI-R-CA1-bih-f-04-0-UI.s1 /CLONE=UI-R-CA1-bih-f-04-0-UI /FEA=EST /CNT=6 /TID=Rn.47726.1 /TIER=ConsEnd /STK=0 /UG=Rn.47726 /UG_TITLE=ESTs BF404617 1397545_at BM386640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386640 /DB_XREF=gi:18186693 /DB_XREF=UI-R-CN1-cjg-f-23-0-UI.s1 /CLONE=UI-R-CN1-cjg-f-23-0-UI /FEA=EST /CNT=6 /TID=Rn.39245.1 /TIER=ConsEnd /STK=0 /UG=Rn.39245 /UG_TITLE=ESTs BM386640 1397546_at BF567095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567095 /DB_XREF=gi:11676783 /DB_XREF=UI-R-BJ0p-agg-f-11-0-UI.r1 /CLONE=UI-R-BJ0p-agg-f-11-0-UI /FEA=EST /CNT=6 /TID=Rn.52841.1 /TIER=ConsEnd /STK=0 /UG=Rn.52841 /UG_TITLE=ESTs, Weakly similar to T14738 hypothetical protein DKFZp564A2416.1 (H.sapiens) BF567095 spermatogenesis associated, serine-rich 2 Spats2 300221 NM_001191614 /// XM_001062003 /// XM_217030 0005737 // cytoplasm // not recorded 1397547_at BF407913 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407913 /DB_XREF=gi:11395888 /DB_XREF=UI-R-C3-sx-e-02-0-UI.s2 /CLONE=UI-R-C3-sx-e-02-0-UI /FEA=EST /CNT=6 /TID=Rn.44980.1 /TIER=ConsEnd /STK=0 /UG=Rn.44980 /UG_TITLE=ESTs, Weakly similar to S21976 probable RNA-directed DNA polymerase (R.norvegicus) BF407913 Inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta Ikbkb 84351 NM_053355 0001782 // B cell homeostasis // inferred from electronic annotation /// 0001782 // B cell homeostasis // not recorded /// 0003009 // skeletal muscle contraction // inferred from expression pattern /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0007252 // I-kappaB phosphorylation // inferred from direct assay /// 0007252 // I-kappaB phosphorylation // inferred from mutant phenotype /// 0009636 // response to toxin // inferred from expression pattern /// 0016310 // phosphorylation // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0043122 // regulation of I-kappaB kinase/NF-kappaB cascade // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from mutant phenotype /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0008385 // IkappaB kinase complex // inferred from physical interaction /// 0016020 // membrane // inferred from electronic annotation /// 0045121 // membrane raft // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from mutant phenotype /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from sequence or structural similarity /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008384 // IkappaB kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1397548_at BF417363 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417363 /DB_XREF=gi:11405352 /DB_XREF=UI-R-CN0-bld-c-11-0-UI.s1 /CLONE=UI-R-CN0-bld-c-11-0-UI /FEA=EST /CNT=6 /TID=Rn.35286.1 /TIER=ConsEnd /STK=0 /UG=Rn.35286 /UG_TITLE=ESTs BF417363 histocompatibility (minor) HA-1 Hmha1 314618 NM_001108067 0007165 // signal transduction // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0046872 // metal ion binding // inferred from electronic annotation 1397549_at AW526039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526039 /DB_XREF=gi:7168424 /DB_XREF=UI-R-BO1-aiy-e-10-0-UI.s1 /CLONE=UI-R-BO1-aiy-e-10-0-UI /FEA=EST /CNT=6 /TID=Rn.38606.1 /TIER=ConsEnd /STK=0 /UG=Rn.38606 /UG_TITLE=ESTs, Highly similar to Y167_HUMAN HYPOTHETICAL PROTEIN KIAA0167 (H.sapiens) AW526039 ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 Agap2 65218 NM_023026 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from direct assay /// 0030295 // protein kinase activator activity // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1397550_at BF413110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413110 /DB_XREF=gi:11401099 /DB_XREF=UI-R-CA0-bod-g-07-0-UI.s1 /CLONE=UI-R-CA0-bod-g-07-0-UI /FEA=EST /CNT=6 /TID=Rn.63263.1 /TIER=ConsEnd /STK=0 /UG=Rn.63263 /UG_TITLE=ESTs BF413110 1397551_at BG373974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373974 /DB_XREF=gi:13298446 /DB_XREF=UI-R-CV1-bsl-a-06-0-UI.s1 /CLONE=UI-R-CV1-bsl-a-06-0-UI /FEA=EST /CNT=6 /TID=Rn.49302.1 /TIER=ConsEnd /STK=0 /UG=Rn.49302 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BG373974 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 Ddx27 362274 NM_001135801 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1397552_at AA899923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA899923 /DB_XREF=gi:4232415 /DB_XREF=UI-R-E0-dh-f-09-0-UI.s1 /CLONE=UI-R-E0-dh-f-09-0-UI /FEA=EST /CNT=6 /TID=Rn.22926.1 /TIER=ConsEnd /STK=0 /UG=Rn.22926 /UG_TITLE=ESTs AA899923 echinoderm microtubule associated protein like 4 Eml4 313861 NM_001108008 0005515 // protein binding // not recorded 1397553_s_at AI101637 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101637 /DB_XREF=gi:3706512 /DB_XREF=EST210926 /CLONE=RBRBT22 /FEA=EST /CNT=6 /TID=Rn.24376.1 /TIER=ConsEnd /STK=0 /UG=Rn.24376 /UG_TITLE=ESTs, Weakly similar to A53503 B-lymphocyte-induced maturation protein 1 - mouse (M.musculus) AI101637 PR domain containing 2, with ZNF domain Prdm2 313678 NM_001077648 0006350 // transcription // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from direct assay /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397554_at BE108776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108776 /DB_XREF=gi:8500881 /DB_XREF=UI-R-BS1-ayy-c-10-0-UI.s1 /CLONE=UI-R-BS1-ayy-c-10-0-UI /FEA=EST /CNT=7 /TID=Rn.46626.1 /TIER=ConsEnd /STK=0 /UG=Rn.46626 /UG_TITLE=ESTs BE108776 1397555_at BG668744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668744 /DB_XREF=gi:13890666 /DB_XREF=DRNCBC09 /CLONE=DRNCBC09 /FEA=EST /CNT=6 /TID=Rn.45224.1 /TIER=ConsEnd /STK=0 /UG=Rn.45224 /UG_TITLE=ESTs, Moderately similar to S21348 probable pol polyprotein-related protein 4 - rat (R.norvegicus) BG668744 1397556_at BF563329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563329 /DB_XREF=gi:11673059 /DB_XREF=UI-R-BJ0p-ais-c-05-0-UI.r1 /CLONE=UI-R-BJ0p-ais-c-05-0-UI /FEA=EST /CNT=6 /TID=Rn.45221.1 /TIER=ConsEnd /STK=0 /UG=Rn.45221 /UG_TITLE=ESTs, Weakly similar to T16306 hypothetical protein F40F4.7 - Caenorhabditis elegans (C.elegans) BF563329 N-acetyltransferase 13 Nat13 288108 NM_001105881 0008152 // metabolic process // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation 1397557_at BF524412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF524412 /DB_XREF=gi:11632379 /DB_XREF=UI-R-C3-tk-f-01-0-UI.r1 /CLONE=UI-R-C3-tk-f-01-0-UI /FEA=EST /CNT=6 /TID=Rn.24733.1 /TIER=ConsEnd /STK=0 /UG=Rn.24733 /UG_TITLE=ESTs, Highly similar to S27958 transcription factor BTF2 62K chain (H.sapiens) BF524412 general transcription factor IIH, polypeptide 1 Gtf2h1 361580 NM_001108485 0000718 // nucleotide-excision repair, DNA damage removal // not recorded /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005675 // holo TFIIH complex // not recorded 0004672 // protein kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0008094 // DNA-dependent ATPase activity // not recorded /// 0008353 // RNA polymerase II carboxy-terminal domain kinase activity // not recorded 1397558_at AW527159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527159 /DB_XREF=gi:7169573 /DB_XREF=UI-R-BO1-ajm-b-12-0-UI.s1 /CLONE=UI-R-BO1-ajm-b-12-0-UI /FEA=EST /CNT=5 /TID=Rn.31650.1 /TIER=ConsEnd /STK=0 /UG=Rn.31650 /UG_TITLE=ESTs AW527159 1397559_at BI287330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287330 /DB_XREF=gi:14942842 /DB_XREF=UI-R-CS0s-cbn-f-02-0-UI.s1 /CLONE=UI-R-CS0s-cbn-f-02-0-UI /FEA=EST /CNT=5 /TID=Rn.29809.1 /TIER=ConsEnd /STK=0 /UG=Rn.29809 /UG_TITLE=ESTs BI287330 protein phosphatase 1, regulatory (inhibitor) subunit 3A Ppp1r3a 500036 NM_001109222 1397560_at BF284722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284722 /DB_XREF=gi:11215792 /DB_XREF=EST449313 /CLONE=RGIEV38 /FEA=EST /CNT=5 /TID=Rn.29808.1 /TIER=ConsEnd /STK=0 /UG=Rn.29808 /UG_TITLE=ESTs BF284722 1397561_at BG667110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667110 /DB_XREF=gi:13889032 /DB_XREF=DRACNH10 /CLONE=DRACNH10 /FEA=EST /CNT=5 /TID=Rn.28108.1 /TIER=ConsEnd /STK=0 /UG=Rn.28108 /UG_TITLE=ESTs BG667110 1397562_at AW534448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534448 /DB_XREF=gi:7176862 /DB_XREF=UI-R-C4-aln-f-10-0-UI.s1 /CLONE=UI-R-C4-aln-f-10-0-UI /FEA=EST /CNT=5 /TID=Rn.33771.1 /TIER=ConsEnd /STK=0 /UG=Rn.33771 /UG_TITLE=ESTs AW534448 1397563_at AW522171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522171 /DB_XREF=gi:7164556 /DB_XREF=UI-R-BO0-agm-c-11-0-UI.s1 /CLONE=UI-R-BO0-agm-c-11-0-UI /FEA=EST /CNT=5 /TID=Rn.45317.1 /TIER=ConsEnd /STK=0 /UG=Rn.45317 /UG_TITLE=ESTs AW522171 1397564_at BF286959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF286959 /DB_XREF=gi:11218029 /DB_XREF=EST451550 /CLONE=RGIFX06 /FEA=EST /CNT=5 /TID=Rn.56068.1 /TIER=ConsEnd /STK=0 /UG=Rn.56068 /UG_TITLE=ESTs BF286959 1397565_at BI296579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296579 /DB_XREF=gi:14961133 /DB_XREF=UI-R-CV2-cgs-g-09-0-UI.s1 /CLONE=UI-R-CV2-cgs-g-09-0-UI /FEA=EST /CNT=5 /TID=Rn.32866.1 /TIER=ConsEnd /STK=0 /UG=Rn.32866 /UG_TITLE=ESTs BI296579 1397566_at BF548706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548706 /DB_XREF=gi:11639813 /DB_XREF=UI-R-A0-ai-c-12-0-UI.r1 /CLONE=UI-R-A0-ai-c-12-0-UI /FEA=EST /CNT=5 /TID=Rn.55404.1 /TIER=ConsEnd /STK=0 /UG=Rn.55404 /UG_TITLE=ESTs, Moderately similar to UBCE_HUMAN UBIQUITIN-CONJUGATING ENZYME E2-24 KD (H.sapiens) BF548706 ubiquitin-conjugating enzyme E2S Ube2s 292588 NM_001106224 0007049 // cell cycle // inferred from electronic annotation /// 0010458 // exit from mitosis // inferred from sequence or structural similarity /// 0010458 // exit from mitosis // inferred from electronic annotation /// 0010994 // free ubiquitin chain polymerization // inferred from sequence or structural similarity /// 0010994 // free ubiquitin chain polymerization // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0035519 // protein K29-linked ubiquitination // inferred from sequence or structural similarity /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0044314 // protein K27-linked ubiquitination // inferred from sequence or structural similarity /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051488 // activation of anaphase-promoting complex activity // inferred from sequence or structural similarity /// 0051488 // activation of anaphase-promoting complex activity // inferred from electronic annotation /// 0070534 // protein K63-linked ubiquitination // inferred from sequence or structural similarity /// 0070979 // protein K11-linked ubiquitination // inferred from sequence or structural similarity /// 0070979 // protein K11-linked ubiquitination // inferred from electronic annotation /// 0085020 // protein K6-linked ubiquitination // inferred from sequence or structural similarity 0005680 // anaphase-promoting complex // inferred from sequence or structural similarity /// 0005680 // anaphase-promoting complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1397567_at BI273995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI273995 /DB_XREF=gi:14884504 /DB_XREF=UI-R-CW0-bwb-d-11-0-UI.s1 /CLONE=UI-R-CW0-bwb-d-11-0-UI /FEA=EST /CNT=5 /TID=Rn.43132.1 /TIER=ConsEnd /STK=0 /UG=Rn.43132 /UG_TITLE=ESTs BI273995 1397568_at AW521373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521373 /DB_XREF=gi:7163751 /DB_XREF=UI-R-BO0-agl-g-04-0-UI.s1 /CLONE=UI-R-BO0-agl-g-04-0-UI /FEA=EST /CNT=5 /TID=Rn.38984.1 /TIER=ConsEnd /STK=0 /UG=Rn.38984 /UG_TITLE=ESTs AW521373 tumor protein p53 inducible nuclear protein 2 Tp53inp2 362246 XM_001063973 /// XM_001074013 0005634 // nucleus // inferred from electronic annotation 1397569_at BF546710 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546710 /DB_XREF=gi:11637817 /DB_XREF=UI-R-C1-li-e-05-0-UI.r1 /CLONE=UI-R-C1-li-e-05-0-UI /FEA=EST /CNT=5 /TID=Rn.56094.1 /TIER=ConsEnd /STK=0 /UG=Rn.56094 /UG_TITLE=ESTs BF546710 1397570_at BF410161 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410161 /DB_XREF=gi:11398136 /DB_XREF=UI-R-CA1-bju-b-12-0-UI.s1 /CLONE=UI-R-CA1-bju-b-12-0-UI /FEA=EST /CNT=5 /TID=Rn.27872.1 /TIER=ConsEnd /STK=0 /UG=Rn.27872 /UG_TITLE=ESTs BF410161 1397571_at BF554256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554256 /DB_XREF=gi:11663986 /DB_XREF=UI-R-C1-kf-c-08-0-UI.r1 /CLONE=UI-R-C1-kf-c-08-0-UI /FEA=EST /CNT=5 /TID=Rn.20837.1 /TIER=ConsEnd /STK=0 /UG=Rn.20837 /UG_TITLE=ESTs BF554256 Cancer susceptibility candidate 3 Casc3 259170 NM_147144 0000184 // nuclear-transcribed mRNA catabolic process, nonsense-mediated decay // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006950 // response to stress // inferred from electronic annotation /// 0008298 // intracellular mRNA localization // inferred from electronic annotation /// 0008298 // intracellular mRNA localization // not recorded /// 0008380 // RNA splicing // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1397572_at BE109994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109994 /DB_XREF=gi:8502099 /DB_XREF=UI-R-BJ1-aum-g-07-0-UI.s1 /CLONE=UI-R-BJ1-aum-g-07-0-UI /FEA=EST /CNT=5 /TID=Rn.25531.1 /TIER=ConsEnd /STK=0 /UG=Rn.25531 /UG_TITLE=ESTs BE109994 1397573_at BM391779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391779 /DB_XREF=gi:18191832 /DB_XREF=UI-R-DO1-cmk-g-07-0-UI.s1 /CLONE=UI-R-DO1-cmk-g-07-0-UI /FEA=EST /CNT=5 /TID=Rn.54017.1 /TIER=ConsEnd /STK=0 /UG=Rn.54017 /UG_TITLE=ESTs BM391779 1397574_at BF563598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563598 /DB_XREF=gi:11673328 /DB_XREF=UI-R-BT1-akj-f-08-0-UI.r1 /CLONE=UI-R-BT1-akj-f-08-0-UI /FEA=EST /CNT=5 /TID=Rn.51254.1 /TIER=ConsEnd /STK=0 /UG=Rn.51254 /UG_TITLE=ESTs BF563598 1397575_at BF415880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415880 /DB_XREF=gi:11403869 /DB_XREF=UI-R-CA0-bkg-b-02-0-UI.s1 /CLONE=UI-R-CA0-bkg-b-02-0-UI /FEA=EST /CNT=5 /TID=Rn.35277.1 /TIER=ConsEnd /STK=0 /UG=Rn.35277 /UG_TITLE=ESTs BF415880 similar to RIKEN cDNA D930015E06 LOC679811 679811 XM_001054550 /// XM_002725985 1397576_at AI576144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576144 /DB_XREF=gi:4560520 /DB_XREF=UI-R-AB0-vu-a-03-0-UI.s1 /CLONE=UI-R-AB0-vu-a-03-0-UI /FEA=EST /CNT=5 /TID=Rn.37124.1 /TIER=ConsEnd /STK=0 /UG=Rn.37124 /UG_TITLE=ESTs AI576144 Rad54 like 2 (S. cerevisiae) Rad54l2 363135 NM_001134520 0045449 // regulation of transcription // not recorded 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003712 // transcription cofactor activity // not recorded /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded 1397577_at BF397749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397749 /DB_XREF=gi:11382733 /DB_XREF=UI-R-BS2-bee-b-08-0-UI.s1 /CLONE=UI-R-BS2-bee-b-08-0-UI /FEA=EST /CNT=5 /TID=Rn.27191.1 /TIER=ConsEnd /STK=0 /UG=Rn.27191 /UG_TITLE=ESTs BF397749 1397578_at BE099423 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE099423 /DB_XREF=gi:8491339 /DB_XREF=UI-R-BJ1-atw-f-11-0-UI.s1 /CLONE=UI-R-BJ1-atw-f-11-0-UI /FEA=EST /CNT=5 /TID=Rn.26849.1 /TIER=ConsEnd /STK=0 /UG=Rn.26849 /UG_TITLE=ESTs BE099423 1397579_x_at BI294552 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294552 /DB_XREF=gi:14957114 /DB_XREF=UI-R-DK0-cel-e-10-0-UI.s1 /CLONE=UI-R-DK0-cel-e-10-0-UI /FEA=EST /CNT=5 /TID=Rn.39052.1 /TIER=ConsEnd /STK=0 /UG=Rn.39052 /UG_TITLE=ESTs BI294552 adenomatosis polyposis coli 2 Apc2 299611 NM_001106769 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation 0016342 // catenin complex // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0008017 // microtubule binding // inferred from electronic annotation 1397580_at AI500809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI500809 /DB_XREF=gi:4398660 /DB_XREF=UI-R-C2p-rq-e-01-0-UI.s1 /CLONE=UI-R-C2p-rq-e-01-0-UI /FEA=EST /CNT=5 /TID=Rn.27003.1 /TIER=ConsEnd /STK=0 /UG=Rn.27003 /UG_TITLE=ESTs AI500809 1397581_at BF416022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416022 /DB_XREF=gi:11404011 /DB_XREF=UI-R-CA0-bkh-c-06-0-UI.s1 /CLONE=UI-R-CA0-bkh-c-06-0-UI /FEA=EST /CNT=5 /TID=Rn.28498.1 /TIER=ConsEnd /STK=0 /UG=Rn.28498 /UG_TITLE=ESTs BF416022 ras homolog gene family, member V Rhov 171581 NM_138542 0007165 // signal transduction // inferred from direct assay /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397582_at AW529518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529518 /DB_XREF=gi:7171932 /DB_XREF=UI-R-BT1-akl-b-12-0-UI.s1 /CLONE=UI-R-BT1-akl-b-12-0-UI /FEA=EST /CNT=5 /TID=Rn.47225.1 /TIER=ConsEnd /STK=0 /UG=Rn.47225 /UG_TITLE=ESTs AW529518 1397583_at BF394946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394946 /DB_XREF=gi:11379907 /DB_XREF=UI-R-CA0-bgf-g-02-0-UI.s1 /CLONE=UI-R-CA0-bgf-g-02-0-UI /FEA=EST /CNT=5 /TID=Rn.45773.1 /TIER=ConsEnd /STK=0 /UG=Rn.45773 /UG_TITLE=ESTs BF394946 1397584_at BF289504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289504 /DB_XREF=gi:11220574 /DB_XREF=EST454095 /CLONE=RGIHH96 /FEA=EST /CNT=5 /TID=Rn.55786.1 /TIER=ConsEnd /STK=0 /UG=Rn.55786 /UG_TITLE=ESTs BF289504 1397585_at BE106241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106241 /DB_XREF=gi:8498343 /DB_XREF=UI-R-BO1-asl-f-05-0-UI.s1 /CLONE=UI-R-BO1-asl-f-05-0-UI /FEA=EST /CNT=5 /TID=Rn.50901.1 /TIER=ConsEnd /STK=0 /UG=Rn.50901 /UG_TITLE=ESTs BE106241 1397586_at BI300588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300588 /DB_XREF=gi:14976868 /DB_XREF=UI-R-CV2-cim-g-01-0-UI.s1 /CLONE=UI-R-CV2-cim-g-01-0-UI /FEA=EST /CNT=5 /TID=Rn.76514.1 /TIER=ConsEnd /STK=0 /UG=Rn.76514 /UG_TITLE=ESTs BI300588 hypothetical protein LOC100364919 LOC100364919 100364919 XM_002726678 1397587_at BI300820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300820 /DB_XREF=gi:14977100 /DB_XREF=UI-R-CV2-cik-b-04-0-UI.s1 /CLONE=UI-R-CV2-cik-b-04-0-UI /FEA=EST /CNT=5 /TID=Rn.66254.1 /TIER=ConsEnd /STK=0 /UG=Rn.66254 /UG_TITLE=ESTs BI300820 Histone deacetylase 5 Hdac5 84580 NM_053450 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0002076 // osteoblast development // inferred from electronic annotation /// 0006325 // chromatin organization // traceable author statement /// 0006950 // response to stress // inferred from electronic annotation /// 0007507 // heart development // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016575 // histone deacetylation // non-traceable author statement /// 0042220 // response to cocaine // inferred from electronic annotation /// 0042493 // response to drug // inferred from direct assay /// 0045668 // negative regulation of osteoblast differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0048742 // regulation of skeletal muscle fiber development // inferred from electronic annotation /// 0051153 // regulation of striated muscle cell differentiation // inferred from electronic annotation /// 0071445 // cellular response to protein stimulus // inferred from expression pattern 0000118 // histone deacetylase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0016604 // nuclear body // inferred from electronic annotation 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0004407 // histone deacetylase activity // inferred from electronic annotation /// 0004407 // histone deacetylase activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1397588_at BF406341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406341 /DB_XREF=gi:11394316 /DB_XREF=UI-R-CA1-bjf-n-17-0-UI.s1 /CLONE=UI-R-CA1-bjf-n-17-0-UI /FEA=EST /CNT=5 /TID=Rn.57741.1 /TIER=ConsEnd /STK=0 /UG=Rn.57741 /UG_TITLE=ESTs BF406341 RGD1561796 RGD1561796 360483 XM_001077638 /// XM_002724481 /// XM_002727702 /// XM_340757 1397589_at BI296502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296502 /DB_XREF=gi:14960988 /DB_XREF=UI-R-CV2-cgs-a-05-0-UI.s1 /CLONE=UI-R-CV2-cgs-a-05-0-UI /FEA=EST /CNT=5 /TID=Rn.73063.1 /TIER=ConsEnd /STK=0 /UG=Rn.73063 /UG_TITLE=ESTs BI296502 1397590_at AA859008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859008 /DB_XREF=gi:4229277 /DB_XREF=UI-R-A0-bi-d-08-0-UI.s1 /CLONE=UI-R-A0-bi-d-08-0-UI /FEA=EST /CNT=5 /TID=Rn.16942.1 /TIER=ConsEnd /STK=0 /UG=Rn.16942 /UG_TITLE=ESTs, Moderately similar to C45439 myosin-I, Myr 1b (R.norvegicus) AA859008 myosin Ib Myo1b 117057 NM_053986 0007399 // nervous system development // non-traceable author statement 0005856 // cytoskeleton // traceable author statement /// 0005903 // brush border // inferred from direct assay /// 0016459 // myosin complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1397591_at BF403332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403332 /DB_XREF=gi:11391307 /DB_XREF=UI-R-CA1-biy-g-08-0-UI.s1 /CLONE=UI-R-CA1-biy-g-08-0-UI /FEA=EST /CNT=5 /TID=Rn.62842.1 /TIER=ConsEnd /STK=0 /UG=Rn.62842 /UG_TITLE=ESTs BF403332 1397592_at BF412933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412933 /DB_XREF=gi:11400922 /DB_XREF=UI-R-CA0-boc-e-04-0-UI.s1 /CLONE=UI-R-CA0-boc-e-04-0-UI /FEA=EST /CNT=5 /TID=Rn.63718.1 /TIER=ConsEnd /STK=0 /UG=Rn.63718 /UG_TITLE=ESTs, Weakly similar to UAS3_HUMAN UBASH3A PROTEIN (H.sapiens) BF412933 ubiquitin associated and SH3 domain containing, B Ubash3b 315579 NM_001191792 /// XM_001065047 /// XM_236104 1397593_at BF416553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416553 /DB_XREF=gi:11404542 /DB_XREF=UI-R-CA1-bkt-a-05-0-UI.s1 /CLONE=UI-R-CA1-bkt-a-05-0-UI /FEA=EST /CNT=5 /TID=Rn.63064.1 /TIER=ConsEnd /STK=0 /UG=Rn.63064 /UG_TITLE=ESTs BF416553 1397594_at BF405308 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405308 /DB_XREF=gi:11393283 /DB_XREF=UI-R-CA1-biw-k-05-0-UI.s1 /CLONE=UI-R-CA1-biw-k-05-0-UI /FEA=EST /CNT=5 /TID=Rn.60729.1 /TIER=ConsEnd /STK=0 /UG=Rn.60729 /UG_TITLE=ESTs BF405308 1397595_at BF413004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413004 /DB_XREF=gi:11401033 /DB_XREF=UI-R-CA0-bod-a-04-0-UI.s1 /CLONE=UI-R-CA0-bod-a-04-0-UI /FEA=EST /CNT=5 /TID=Rn.62226.1 /TIER=ConsEnd /STK=0 /UG=Rn.62226 /UG_TITLE=ESTs BF413004 1397596_at H31511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31511 /DB_XREF=gi:976928 /DB_XREF=EST105605 /CLONE=RPCAM09 /FEA=EST /CNT=4 /TID=Rn.60320.1 /TIER=ConsEnd /STK=0 /UG=Rn.60320 /UG_TITLE=ESTs H31511 tripartite motif-containing 2 Trim2 361970 NM_001108552 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397597_at AW531942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531942 /DB_XREF=gi:7174356 /DB_XREF=UI-R-C4-alh-b-11-0-UI.s1 /CLONE=UI-R-C4-alh-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.44860.1 /TIER=ConsEnd /STK=0 /UG=Rn.44860 /UG_TITLE=ESTs AW531942 1397598_at BF290562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290562 /DB_XREF=gi:11221632 /DB_XREF=EST455153 /CLONE=RGIHW57 /FEA=EST /CNT=4 /TID=Rn.30321.1 /TIER=ConsEnd /STK=0 /UG=Rn.30321 /UG_TITLE=ESTs BF290562 1397599_at BF394205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394205 /DB_XREF=gi:11379069 /DB_XREF=UI-R-CA0-bhb-g-06-0-UI.s1 /CLONE=UI-R-CA0-bhb-g-06-0-UI /FEA=EST /CNT=4 /TID=Rn.59797.1 /TIER=ConsEnd /STK=0 /UG=Rn.59797 /UG_TITLE=ESTs BF394205 1397600_at AI717400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717400 /DB_XREF=gi:5034656 /DB_XREF=UI-R-Y0-aco-f-07-0-UI.s1 /CLONE=UI-R-Y0-aco-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.41541.1 /TIER=ConsEnd /STK=0 /UG=Rn.41541 /UG_TITLE=ESTs, Moderately similar to T42706 hypothetical protein DKFZp434O158.1 (H.sapiens) AI717400 vezatin, adherens junctions transmembrane protein Vezt 299738 NM_001006984 0016337 // cell-cell adhesion // not recorded /// 0043009 // chordate embryonic development // not recorded 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0002142 // stereocilia ankle link complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // not recorded 1397601_at BI289709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289709 /DB_XREF=gi:14947568 /DB_XREF=UI-R-DK0-cfn-c-05-0-UI.s1 /CLONE=UI-R-DK0-cfn-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.55540.1 /TIER=ConsEnd /STK=0 /UG=Rn.55540 /UG_TITLE=ESTs BI289709 1397602_at BF419930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419930 /DB_XREF=gi:11407919 /DB_XREF=UI-R-BJ2-bph-h-03-0-UI.s1 /CLONE=UI-R-BJ2-bph-h-03-0-UI /FEA=EST /CNT=4 /TID=Rn.43496.1 /TIER=ConsEnd /STK=0 /UG=Rn.43496 /UG_TITLE=ESTs BF419930 1397603_at AW528821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528821 /DB_XREF=gi:7171235 /DB_XREF=UI-R-BT1-akj-a-08-0-UI.s1 /CLONE=UI-R-BT1-akj-a-08-0-UI /FEA=EST /CNT=4 /TID=Rn.54169.1 /TIER=ConsEnd /STK=0 /UG=Rn.54169 /UG_TITLE=ESTs AW528821 1397604_at BE128641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE128641 /DB_XREF=gi:8551394 /DB_XREF=DEPA2391 /FEA=EST /CNT=4 /TID=Rn.64744.1 /TIER=ConsEnd /STK=0 /UG=Rn.64744 /UG_TITLE=ESTs, Moderately similar to PFD3_HUMAN PREFOLDIN SUBUNIT 3 (VON HIPPEL-LINDAU BINDING PROTEIN 1) (VHL BINDING PROTEIN-1) (VBP-1) (HIBBJ46) (M.musculus) BE128641 similar to Prefoldin subunit 3 (Von Hippel-Lindau-binding protein 1) (VHL-binding protein 1) (VBP-1) LOC681825 681825 XM_001058594 0006457 // protein folding // inferred from electronic annotation 0016272 // prefoldin complex // inferred from electronic annotation 0051082 // unfolded protein binding // inferred from electronic annotation 1397605_at BG374064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG374064 /DB_XREF=gi:13298536 /DB_XREF=UI-R-CV1-bsj-a-07-0-UI.s1 /CLONE=UI-R-CV1-bsj-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.66184.1 /TIER=ConsEnd /STK=0 /UG=Rn.66184 /UG_TITLE=ESTs BG374064 1397606_at D85807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D85807 /DB_XREF=gi:1469821 /DB_XREF=D85807 /FEA=EST /CNT=4 /TID=Rn.39365.1 /TIER=ConsEnd /STK=0 /UG=Rn.39365 /UG_TITLE=ESTs D85807 1397607_at AI176987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176987 /DB_XREF=gi:3727625 /DB_XREF=EST220593 /CLONE=ROVBZ43 /FEA=EST /CNT=4 /TID=Rn.29871.1 /TIER=ConsEnd /STK=0 /UG=Rn.29871 /UG_TITLE=ESTs AI176987 similar to adult retina protein RGD1310862 303016 XM_001064739 /// XM_220273 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1397608_at BE107197 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107197 /DB_XREF=gi:8499302 /DB_XREF=UI-R-BS1-ayr-a-05-0-UI.s1 /CLONE=UI-R-BS1-ayr-a-05-0-UI /FEA=EST /CNT=4 /TID=Rn.51135.1 /TIER=ConsEnd /STK=0 /UG=Rn.51135 /UG_TITLE=ESTs BE107197 1397609_at BF287466 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287466 /DB_XREF=gi:11218536 /DB_XREF=EST452057 /CLONE=RGIGG43 /FEA=EST /CNT=4 /TID=Rn.48857.1 /TIER=ConsEnd /STK=0 /UG=Rn.48857 /UG_TITLE=ESTs BF287466 TRAF4 associated factor 1 Traf4af1 311325 NM_001004264 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1397610_at BI290825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290825 /DB_XREF=gi:14949768 /DB_XREF=UI-R-DK0-cga-h-02-0-UI.s1 /CLONE=UI-R-DK0-cga-h-02-0-UI /FEA=EST /CNT=4 /TID=Rn.38413.1 /TIER=ConsEnd /STK=0 /UG=Rn.38413 /UG_TITLE=ESTs BI290825 1397611_at AW525619 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525619 /DB_XREF=gi:7168004 /DB_XREF=UI-R-BJ0p-ain-g-09-0-UI.s1 /CLONE=UI-R-BJ0p-ain-g-09-0-UI /FEA=EST /CNT=4 /TID=Rn.45049.1 /TIER=ConsEnd /STK=0 /UG=Rn.45049 /UG_TITLE=ESTs AW525619 1397612_at BF391002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391002 /DB_XREF=gi:11375849 /DB_XREF=UI-R-CA1-bcf-a-10-0-UI.s1 /CLONE=UI-R-CA1-bcf-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.52745.1 /TIER=ConsEnd /STK=0 /UG=Rn.52745 /UG_TITLE=ESTs BF391002 1397613_at BF564327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564327 /DB_XREF=gi:11674057 /DB_XREF=UI-R-C4-aln-e-11-0-UI.r1 /CLONE=UI-R-C4-aln-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.48336.1 /TIER=ConsEnd /STK=0 /UG=Rn.48336 /UG_TITLE=ESTs BF564327 transmembrane protein 63b Tmem63b 363197 XR_085908 /// XR_086334 1397614_at BF404116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404116 /DB_XREF=gi:11392091 /DB_XREF=UI-R-CA1-biw-b-22-0-UI.s1 /CLONE=UI-R-CA1-biw-b-22-0-UI /FEA=EST /CNT=4 /TID=Rn.60434.1 /TIER=ConsEnd /STK=0 /UG=Rn.60434 /UG_TITLE=ESTs BF404116 gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 2 Gabra2 289606 NM_001135779 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004890 // GABA-A receptor activity // inferred from electronic annotation /// 0004890 // GABA-A receptor activity // traceable author statement /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation 1397615_at BG375528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375528 /DB_XREF=gi:13300000 /DB_XREF=UI-R-CV1-btc-d-03-0-UI.s1 /CLONE=UI-R-CV1-btc-d-03-0-UI /FEA=EST /CNT=4 /TID=Rn.66323.1 /TIER=ConsEnd /STK=0 /UG=Rn.66323 /UG_TITLE=ESTs BG375528 1397616_at BI292232 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292232 /DB_XREF=gi:14952526 /DB_XREF=UI-R-DN0-civ-a-10-0-UI.s1 /CLONE=UI-R-DN0-civ-a-10-0-UI /FEA=EST /CNT=4 /TID=Rn.43415.1 /TIER=ConsEnd /STK=0 /UG=Rn.43415 /UG_TITLE=ESTs BI292232 1397617_at BM382925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM382925 /DB_XREF=gi:18182978 /DB_XREF=UI-R-DS0-cjd-m-11-0-UI.s1 /CLONE=UI-R-DS0-cjd-m-11-0-UI /FEA=EST /CNT=4 /TID=Rn.8874.1 /TIER=ConsEnd /STK=0 /UG=Rn.8874 /UG_TITLE=ESTs BM382925 Jumonji, AT rich interactive domain 1A (Rbp2 like) Jarid1a 312678 XM_002726483 /// XM_002729425 0045941 // positive regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0019907 // cyclin-dependent protein kinase activating kinase holoenzyme complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397618_at BF559398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559398 /DB_XREF=gi:11669176 /DB_XREF=UI-R-E0-cj-g-07-0-UI.r1 /CLONE=UI-R-E0-cj-g-07-0-UI /FEA=EST /CNT=4 /TID=Rn.24814.1 /TIER=ConsEnd /STK=0 /UG=Rn.24814 /UG_TITLE=ESTs, Weakly similar to JNKSAPK-associated protein-1 (M.musculus) BF559398 sperm associated antigen 9 Spag9 360600 NM_001108290 0000187 // activation of MAPK activity // not recorded /// 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // not recorded /// 0051260 // protein homooligomerization // not recorded /// 0051260 // protein homooligomerization // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005515 // protein binding // not recorded /// 0008432 // JUN kinase binding // not recorded /// 0008432 // JUN kinase binding // inferred from electronic annotation /// 0019894 // kinesin binding // not recorded /// 0019894 // kinesin binding // inferred from electronic annotation 1397619_at BG381732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381732 /DB_XREF=gi:13306204 /DB_XREF=UI-R-CT0-bue-g-09-0-UI.s1 /CLONE=UI-R-CT0-bue-g-09-0-UI /FEA=EST /CNT=4 /TID=Rn.48086.1 /TIER=ConsEnd /STK=0 /UG=Rn.48086 /UG_TITLE=ESTs BG381732 1397620_at BG372003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372003 /DB_XREF=gi:13268540 /DB_XREF=UI-R-CV0-brl-b-02-0-UI.s1 /CLONE=UI-R-CV0-brl-b-02-0-UI /FEA=EST /CNT=4 /TID=Rn.34845.1 /TIER=ConsEnd /STK=0 /UG=Rn.34845 /UG_TITLE=ESTs, Highly similar to plenty of SH3 domains; Plenty of SH3s (Mus musculus) (M.musculus) BG372003 SH3 domain containing ring finger 1 Sh3rf1 306417 NM_198764 0006917 // induction of apoptosis // inferred from mutant phenotype /// 0046328 // regulation of JNK cascade // inferred from electronic annotation /// 0046328 // regulation of JNK cascade // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005078 // MAP-kinase scaffold activity // inferred from electronic annotation /// 0005078 // MAP-kinase scaffold activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397621_at AI502942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502942 /DB_XREF=gi:4400793 /DB_XREF=UI-R-C1-ks-g-02-0-UI.s1 /CLONE=UI-R-C1-ks-g-02-0-UI /FEA=EST /CNT=4 /TID=Rn.34593.1 /TIER=ConsEnd /STK=0 /UG=Rn.34593 /UG_TITLE=ESTs AI502942 1397622_at AI578003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578003 /DB_XREF=gi:4562379 /DB_XREF=UI-R-Y0-vo-a-05-0-UI.s1 /CLONE=UI-R-Y0-vo-a-05-0-UI /FEA=EST /CNT=4 /TID=Rn.48937.1 /TIER=ConsEnd /STK=0 /UG=Rn.48937 /UG_TITLE=ESTs AI578003 1397623_at BF391952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391952 /DB_XREF=gi:11376809 /DB_XREF=UI-R-CA0-bfh-e-04-0-UI.s1 /CLONE=UI-R-CA0-bfh-e-04-0-UI /FEA=EST /CNT=4 /TID=Rn.46569.1 /TIER=ConsEnd /STK=0 /UG=Rn.46569 /UG_TITLE=ESTs BF391952 1397624_at BI300158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300158 /DB_XREF=gi:14976438 /DB_XREF=UI-R-CV2-cib-e-10-0-UI.s1 /CLONE=UI-R-CV2-cib-e-10-0-UI /FEA=EST /CNT=4 /TID=Rn.63730.1 /TIER=ConsEnd /STK=0 /UG=Rn.63730 /UG_TITLE=ESTs BI300158 1397625_at BE107694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107694 /DB_XREF=gi:8499799 /DB_XREF=UI-R-BT1-ame-g-12-0-UI.s1 /CLONE=UI-R-BT1-ame-g-12-0-UI /FEA=EST /CNT=4 /TID=Rn.46335.1 /TIER=ConsEnd /STK=0 /UG=Rn.46335 /UG_TITLE=ESTs BE107694 1397626_at BF286972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF286972 /DB_XREF=gi:11218042 /DB_XREF=EST451563 /CLONE=RGIFX24 /FEA=EST /CNT=4 /TID=Rn.28192.1 /TIER=ConsEnd /STK=0 /UG=Rn.28192 /UG_TITLE=ESTs BF286972 1397627_at BE128082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE128082 /DB_XREF=gi:8550827 /DB_XREF=DEPA1831 /FEA=EST /CNT=4 /TID=Rn.72730.1 /TIER=ConsEnd /STK=0 /UG=Rn.72730 /UG_TITLE=ESTs, Highly similar to DIA1 MOUSE DIAPHANOUS PROTEIN HOMOLOG 1 (M.musculus) BE128082 0016043 // cellular component organization // inferred from electronic annotation /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from electronic annotation 1397628_at BM390965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390965 /DB_XREF=gi:18191018 /DB_XREF=UI-R-CN1-cjm-c-23-0-UI.s1 /CLONE=UI-R-CN1-cjm-c-23-0-UI /FEA=EST /CNT=4 /TID=Rn.38914.1 /TIER=ConsEnd /STK=0 /UG=Rn.38914 /UG_TITLE=ESTs BM390965 similar to RIKEN cDNA 2900092E17 RGD1305592 293500 NM_001013901 0051384 // response to glucocorticoid stimulus // inferred from expression pattern 0016020 // membrane // inferred from direct assay /// 0042599 // lamellar body // inferred from direct assay 1397629_at BF287074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287074 /DB_XREF=gi:11218144 /DB_XREF=EST451665 /CLONE=RGIFY73 /FEA=EST /CNT=4 /TID=Rn.28230.1 /TIER=ConsEnd /STK=0 /UG=Rn.28230 /UG_TITLE=ESTs BF287074 1397630_at BE119116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119116 /DB_XREF=gi:8511221 /DB_XREF=UI-R-CA0-azy-f-09-0-UI.s1 /CLONE=UI-R-CA0-azy-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.53137.1 /TIER=ConsEnd /STK=0 /UG=Rn.53137 /UG_TITLE=ESTs BE119116 1397631_at BE113329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113329 /DB_XREF=gi:8505399 /DB_XREF=UI-R-BJ1-awd-g-04-0-UI.s1 /CLONE=UI-R-BJ1-awd-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.52174.1 /TIER=ConsEnd /STK=0 /UG=Rn.52174 /UG_TITLE=ESTs BE113329 ubiquitin specific peptidase 8 Usp8 296121 NM_001106502 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007032 // endosome organization // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0070536 // protein K63-linked deubiquitination // not recorded /// 0071108 // protein K48-linked deubiquitination // not recorded 0005622 // intracellular // not recorded /// 0005769 // early endosome // not recorded /// 0005829 // cytosol // not recorded /// 0019897 // extrinsic to plasma membrane // not recorded 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1397632_at AW523107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523107 /DB_XREF=gi:7165492 /DB_XREF=UI-R-BO0-ahq-d-07-0-UI.s1 /CLONE=UI-R-BO0-ahq-d-07-0-UI /FEA=EST /CNT=4 /TID=Rn.47707.1 /TIER=ConsEnd /STK=0 /UG=Rn.47707 /UG_TITLE=ESTs AW523107 SLIT and NTRK-like family, member 1 Slitrk1 306147 NM_001107283 0007409 // axonogenesis // not recorded 0005515 // protein binding // inferred from electronic annotation 1397633_at BI286700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286700 /DB_XREF=gi:14941600 /DB_XREF=UI-R-CT0s-caq-e-12-0-UI.s1 /CLONE=UI-R-CT0s-caq-e-12-0-UI /FEA=EST /CNT=4 /TID=Rn.56657.1 /TIER=ConsEnd /STK=0 /UG=Rn.56657 /UG_TITLE=ESTs BI286700 1397634_at BE098186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098186 /DB_XREF=gi:8490014 /DB_XREF=UI-R-BJ1-ata-d-12-0-UI.s1 /CLONE=UI-R-BJ1-ata-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.13580.1 /TIER=ConsEnd /STK=0 /UG=Rn.13580 /UG_TITLE=ESTs BE098186 ankyrin repeat and sterile alpha motif domain containing 1A Anks1a 309639 NM_001107613 0005515 // protein binding // not recorded 1397635_at BM390325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390325 /DB_XREF=gi:18190378 /DB_XREF=UI-R-CN1-cjq-k-06-0-UI.s1 /CLONE=UI-R-CN1-cjq-k-06-0-UI /FEA=EST /CNT=4 /TID=Rn.43911.1 /TIER=ConsEnd /STK=0 /UG=Rn.43911 /UG_TITLE=ESTs, Weakly similar to A57488 proteinase inhibitor Spi3 - mouse (M.musculus) BM390325 serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 3A Serpinb3a 498209 XM_001056687 /// XM_002724842 /// XM_002727988 /// XM_573426 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation 1397636_at BF389573 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389573 /DB_XREF=gi:11374408 /DB_XREF=UI-R-CJ0-bfd-c-09-0-UI.s1 /CLONE=UI-R-CJ0-bfd-c-09-0-UI /FEA=EST /CNT=4 /TID=Rn.63818.1 /TIER=ConsEnd /STK=0 /UG=Rn.63818 /UG_TITLE=ESTs, Highly similar to T02247 hypothetical protein P1.11659_5 (H.sapiens) BF389573 similar to RIKEN cDNA B230312A22 RGD1311249 298201 NM_001013931 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 1397637_at BE121375 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121375 /DB_XREF=gi:8513480 /DB_XREF=UI-R-CA0-bax-b-09-0-UI.s1 /CLONE=UI-R-CA0-bax-b-09-0-UI /FEA=EST /CNT=4 /TID=Rn.28663.1 /TIER=ConsEnd /STK=0 /UG=Rn.28663 /UG_TITLE=ESTs BE121375 1397638_at BF412682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412682 /DB_XREF=gi:11400671 /DB_XREF=UI-R-BT1-bnq-h-05-0-UI.s1 /CLONE=UI-R-BT1-bnq-h-05-0-UI /FEA=EST /CNT=4 /TID=Rn.38242.1 /TIER=ConsEnd /STK=0 /UG=Rn.38242 /UG_TITLE=ESTs BF412682 1397639_at AI715125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715125 /DB_XREF=gi:5032378 /DB_XREF=UI-R-Y0-abl-d-12-0-UI.s1 /CLONE=UI-R-Y0-abl-d-12-0-UI /FEA=EST /CNT=4 /TID=Rn.41491.1 /TIER=ConsEnd /STK=0 /UG=Rn.41491 /UG_TITLE=ESTs AI715125 1397640_at AI175583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175583 /DB_XREF=gi:3726221 /DB_XREF=EST219138 /CLONE=ROVBC26 /FEA=EST /CNT=4 /TID=Rn.28916.1 /TIER=ConsEnd /STK=0 /UG=Rn.28916 /UG_TITLE=ESTs AI175583 1397641_at BF414999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414999 /DB_XREF=gi:11402988 /DB_XREF=UI-R-BJ2-boy-e-06-0-UI.s1 /CLONE=UI-R-BJ2-boy-e-06-0-UI /FEA=EST /CNT=4 /TID=Rn.49363.1 /TIER=ConsEnd /STK=0 /UG=Rn.49363 /UG_TITLE=ESTs BF414999 1397642_at BM389108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389108 /DB_XREF=gi:18189161 /DB_XREF=UI-R-DZ0-cko-c-01-0-UI.s1 /CLONE=UI-R-DZ0-cko-c-01-0-UI /FEA=EST /CNT=4 /TID=Rn.59433.1 /TIER=ConsEnd /STK=0 /UG=Rn.59433 /UG_TITLE=ESTs BM389108 RAD50 homolog (S. cerevisiae) Rad50 64012 NM_022246 0000019 // regulation of mitotic recombination // not recorded /// 0000019 // regulation of mitotic recombination // inferred from sequence or structural similarity /// 0000075 // cell cycle checkpoint // traceable author statement /// 0000723 // telomere maintenance // traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006281 // DNA repair // not recorded /// 0006281 // DNA repair // inferred from sequence or structural similarity /// 0006302 // double-strand break repair // not recorded /// 0006302 // double-strand break repair // inferred from sequence or structural similarity /// 0006302 // double-strand break repair // traceable author statement /// 0006310 // DNA recombination // not recorded /// 0006310 // DNA recombination // inferred from sequence or structural similarity /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007004 // telomere maintenance via telomerase // not recorded /// 0007004 // telomere maintenance via telomerase // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from electronic annotation /// 0007126 // meiosis // inferred from electronic annotation /// 0007131 // reciprocal meiotic recombination // traceable author statement /// 0031954 // positive regulation of protein autophosphorylation // not recorded /// 0032508 // DNA duplex unwinding // not recorded /// 0033674 // positive regulation of kinase activity // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0000784 // nuclear chromosome, telomeric region // not recorded /// 0000790 // nuclear chromatin // inferred from direct assay /// 0000794 // condensed nuclear chromosome // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from direct assay /// 0016234 // inclusion body // inferred from direct assay /// 0030870 // Mre11 complex // inferred from electronic annotation /// 0030870 // Mre11 complex // not recorded /// 0030870 // Mre11 complex // inferred from sequence or structural similarity /// 0030870 // Mre11 complex // traceable author statement /// 0045120 // pronucleus // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0000014 // single-stranded DNA specific endodeoxyribonuclease activity // not recorded /// 0000014 // single-stranded DNA specific endodeoxyribonuclease activity // inferred from sequence or structural similarity /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0004003 // ATP-dependent DNA helicase activity // not recorded /// 0004518 // nuclease activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008408 // 3'-5' exonuclease activity // not recorded /// 0008408 // 3'-5' exonuclease activity // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030674 // protein binding, bridging // not recorded /// 0030674 // protein binding, bridging // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation 1397643_at BG373964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373964 /DB_XREF=gi:13298436 /DB_XREF=UI-R-CV1-bsi-h-08-0-UI.s1 /CLONE=UI-R-CV1-bsi-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.66176.1 /TIER=ConsEnd /STK=0 /UG=Rn.66176 /UG_TITLE=ESTs BG373964 1397644_at BI278369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278369 /DB_XREF=gi:14925144 /DB_XREF=UI-R-CW0-bwd-f-12-0-UI.s1 /CLONE=UI-R-CW0-bwd-f-12-0-UI /FEA=EST /CNT=4 /TID=Rn.51683.1 /TIER=ConsEnd /STK=0 /UG=Rn.51683 /UG_TITLE=ESTs BI278369 Methylthioadenosine phosphorylase Mtap 298227 NM_001047867 0009116 // nucleoside metabolic process // inferred from electronic annotation /// 0033574 // response to testosterone stimulus // inferred from expression pattern 0005625 // soluble fraction // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0016763 // transferase activity, transferring pentosyl groups // inferred from electronic annotation /// 0017061 // S-methyl-5-thioadenosine phosphorylase activity // inferred from direct assay 1397645_at BI286389 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI286389 /DB_XREF=gi:14940987 /DB_XREF=UI-R-DE0-cak-d-06-0-UI.s1 /CLONE=UI-R-DE0-cak-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.64870.1 /TIER=ConsEnd /STK=0 /UG=Rn.64870 /UG_TITLE=ESTs, Weakly similar to KERATIN, TYPE I CYTOSKELETAL 21 (R.norvegicus) BI286389 keratin 17 Krt17 287702 NM_212545 0002009 // morphogenesis of an epithelium // inferred from electronic annotation /// 0002009 // morphogenesis of an epithelium // not recorded /// 0030307 // positive regulation of cell growth // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // not recorded /// 0031424 // keratinization // inferred from electronic annotation /// 0031424 // keratinization // not recorded /// 0045103 // intermediate filament-based process // traceable author statement /// 0045109 // intermediate filament organization // inferred from electronic annotation /// 0045109 // intermediate filament organization // not recorded /// 0045727 // positive regulation of translation // inferred from electronic annotation /// 0045727 // positive regulation of translation // not recorded /// 0051798 // positive regulation of hair follicle development // inferred from electronic annotation /// 0051798 // positive regulation of hair follicle development // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005882 // intermediate filament // inferred from electronic annotation /// 0005882 // intermediate filament // traceable author statement /// 0045095 // keratin filament // traceable author statement /// 0045111 // intermediate filament cytoskeleton // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1397646_at AW524814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524814 /DB_XREF=gi:7167199 /DB_XREF=UI-R-BO0-ahy-f-04-0-UI.s1 /CLONE=UI-R-BO0-ahy-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.29919.1 /TIER=ConsEnd /STK=0 /UG=Rn.29919 /UG_TITLE=ESTs AW524814 1397647_at BF554040 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554040 /DB_XREF=gi:11663770 /DB_XREF=UI-R-C0-hj-b-05-0-UI.r1 /CLONE=UI-R-C0-hj-b-05-0-UI /FEA=EST /CNT=4 /TID=Rn.40342.1 /TIER=ConsEnd /STK=0 /UG=Rn.40342 /UG_TITLE=ESTs, Weakly similar to MCAT RAT MITOCHONDRIAL CARNITINEACYLCARNITINE CARRIER PROTEIN (R.norvegicus) BF554040 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 Slc25a15 306574 NM_001047880 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1397648_at BE112403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112403 /DB_XREF=gi:8504508 /DB_XREF=UI-R-BJ1-avm-c-05-0-UI.s1 /CLONE=UI-R-BJ1-avm-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.22182.1 /TIER=ConsEnd /STK=0 /UG=Rn.22182 /UG_TITLE=ESTs, Highly similar to FGFR signalling adaptor SNT-1 (H.sapiens) BE112403 fibroblast growth factor receptor substrate 2 Frs2 314850 NM_001108097 0000187 // activation of MAPK activity // not recorded /// 0001702 // gastrulation with mouth forming second // not recorded /// 0001759 // organ induction // not recorded /// 0003281 // ventricular septum development // not recorded /// 0007165 // signal transduction // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // not recorded /// 0007405 // neuroblast proliferation // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // not recorded /// 0008595 // anterior/posterior axis specification, embryo // not recorded /// 0030900 // forebrain development // not recorded /// 0046619 // optic placode formation involved in camera-type eye // not recorded /// 0050678 // regulation of epithelial cell proliferation // not recorded /// 0060527 // prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis // not recorded 0005737 // cytoplasm // not recorded /// 0005768 // endosome // not recorded /// 0005886 // plasma membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005068 // transmembrane receptor protein tyrosine kinase adaptor protein activity // not recorded /// 0005104 // fibroblast growth factor receptor binding // not recorded /// 0005158 // insulin receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1397649_at BI298462 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298462 /DB_XREF=gi:14974742 /DB_XREF=UI-R-CV2-chi-f-05-0-UI.s1 /CLONE=UI-R-CV2-chi-f-05-0-UI /FEA=EST /CNT=4 /TID=Rn.49416.1 /TIER=ConsEnd /STK=0 /UG=Rn.49416 /UG_TITLE=ESTs BI298462 1397650_at BF403165 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403165 /DB_XREF=gi:11391140 /DB_XREF=UI-R-CA0-bhs-d-08-0-UI.s1 /CLONE=UI-R-CA0-bhs-d-08-0-UI /FEA=EST /CNT=4 /TID=Rn.50669.1 /TIER=ConsEnd /STK=0 /UG=Rn.50669 /UG_TITLE=ESTs BF403165 1397651_at BF410591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410591 /DB_XREF=gi:11398566 /DB_XREF=UI-R-CA0-bma-e-08-0-UI.s1 /CLONE=UI-R-CA0-bma-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.61751.1 /TIER=ConsEnd /STK=0 /UG=Rn.61751 /UG_TITLE=ESTs BF410591 1397652_at BE108399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108399 /DB_XREF=gi:8500504 /DB_XREF=UI-R-BS1-ayv-g-11-0-UI.s1 /CLONE=UI-R-BS1-ayv-g-11-0-UI /FEA=EST /CNT=4 /TID=Rn.50044.1 /TIER=ConsEnd /STK=0 /UG=Rn.50044 /UG_TITLE=ESTs BE108399 1397653_at AI578063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578063 /DB_XREF=gi:4562439 /DB_XREF=UI-R-C3-tk-a-11-0-UI.s2 /CLONE=UI-R-C3-tk-a-11-0-UI /FEA=EST /CNT=4 /TID=Rn.38286.1 /TIER=ConsEnd /STK=0 /UG=Rn.38286 /UG_TITLE=ESTs AI578063 1397654_at BG378998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378998 /DB_XREF=gi:13303470 /DB_XREF=UI-R-BT1-bnm-b-09-0-UI.s1 /CLONE=UI-R-BT1-bnm-b-09-0-UI /FEA=EST /CNT=4 /TID=Rn.50408.1 /TIER=ConsEnd /STK=0 /UG=Rn.50408 /UG_TITLE=ESTs BG378998 1397655_at BF415097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415097 /DB_XREF=gi:11403086 /DB_XREF=UI-R-BJ2-bou-f-08-0-UI.s1 /CLONE=UI-R-BJ2-bou-f-08-0-UI /FEA=EST /CNT=4 /TID=Rn.51268.1 /TIER=ConsEnd /STK=0 /UG=Rn.51268 /UG_TITLE=ESTs BF415097 1397656_at BF399269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399269 /DB_XREF=gi:11384273 /DB_XREF=UI-R-CA1-biz-h-23-0-UI.s1 /CLONE=UI-R-CA1-biz-h-23-0-UI /FEA=EST /CNT=4 /TID=Rn.57910.1 /TIER=ConsEnd /STK=0 /UG=Rn.57910 /UG_TITLE=ESTs BF399269 1397657_at BF416736 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416736 /DB_XREF=gi:11404687 /DB_XREF=UI-R-CA0-bku-g-11-0-UI.s1 /CLONE=UI-R-CA0-bku-g-11-0-UI /FEA=EST /CNT=4 /TID=Rn.60728.1 /TIER=ConsEnd /STK=0 /UG=Rn.60728 /UG_TITLE=ESTs BF416736 1397658_at BF414555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414555 /DB_XREF=gi:11402544 /DB_XREF=UI-R-CA0-bpb-a-09-0-UI.s1 /CLONE=UI-R-CA0-bpb-a-09-0-UI /FEA=EST /CNT=4 /TID=Rn.62984.1 /TIER=ConsEnd /STK=0 /UG=Rn.62984 /UG_TITLE=ESTs BF414555 1397659_at BF548753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548753 /DB_XREF=gi:11639860 /DB_XREF=UI-R-A0-ai-g-01-0-UI.r1 /CLONE=UI-R-A0-ai-g-01-0-UI /FEA=EST /CNT=4 /TID=Rn.22644.1 /TIER=ConsEnd /STK=0 /UG=Rn.22644 /UG_TITLE=ESTs, Moderately similar to ZN76_HUMAN ZINC FINGER PROTEIN 7 (H.sapiens) BF548753 zinc finger protein 76 (expressed in testis) Znf76 361809 NM_001134755 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397660_at BE109588 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109588 /DB_XREF=gi:8501693 /DB_XREF=UI-R-BJ1-avp-h-05-0-UI.s1 /CLONE=UI-R-BJ1-avp-h-05-0-UI /FEA=EST /CNT=4 /TID=Rn.49884.1 /TIER=ConsEnd /STK=0 /UG=Rn.49884 /UG_TITLE=ESTs BE109588 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation 1397661_at BF390492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390492 /DB_XREF=gi:11375338 /DB_XREF=UI-R-CA1-bch-f-10-0-UI.s1 /CLONE=UI-R-CA1-bch-f-10-0-UI /FEA=EST /CNT=4 /TID=Rn.60089.1 /TIER=ConsEnd /STK=0 /UG=Rn.60089 /UG_TITLE=ESTs BF390492 1397662_at BF395791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395791 /DB_XREF=gi:11380762 /DB_XREF=UI-R-BT1-bkc-d-01-0-UI.s1 /CLONE=UI-R-BT1-bkc-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.62117.1 /TIER=ConsEnd /STK=0 /UG=Rn.62117 /UG_TITLE=ESTs BF395791 1397663_at BF394561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394561 /DB_XREF=gi:11379427 /DB_XREF=UI-R-CA0-bfx-c-05-0-UI.s1 /CLONE=UI-R-CA0-bfx-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.53187.1 /TIER=ConsEnd /STK=0 /UG=Rn.53187 /UG_TITLE=ESTs BF394561 1397664_at AW527827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527827 /DB_XREF=gi:7170241 /DB_XREF=UI-R-BO1-ajk-f-03-0-UI.s1 /CLONE=UI-R-BO1-ajk-f-03-0-UI /FEA=EST /CNT=4 /TID=Rn.47051.1 /TIER=ConsEnd /STK=0 /UG=Rn.47051 /UG_TITLE=ESTs AW527827 zinc finger CCCH type containing 3 Zc3h3 300032 NM_001134865 0006378 // mRNA polyadenylation // not recorded /// 0010793 // regulation of mRNA export from nucleus // not recorded /// 0016973 // poly(A)+ mRNA export from nucleus // not recorded 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397665_at BF566506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF566506 /DB_XREF=gi:11676236 /DB_XREF=UI-R-BO0-agl-h-08-0-UI.r1 /CLONE=UI-R-BO0-agl-h-08-0-UI /FEA=EST /CNT=6 /TID=Rn.45173.1 /TIER=ConsEnd /STK=0 /UG=Rn.45173 /UG_TITLE=ESTs BF566506 1397666_at BG668689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG668689 /DB_XREF=gi:13890611 /DB_XREF=DRNBLC03 /CLONE=DRNBLC03 /FEA=EST /CNT=4 /TID=Rn.48609.1 /TIER=ConsEnd /STK=0 /UG=Rn.48609 /UG_TITLE=ESTs BG668689 1397667_at BG667685 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667685 /DB_XREF=gi:13889607 /DB_XREF=DRABJC05 /CLONE=DRABJC05 /FEA=EST /CNT=4 /TID=Rn.61020.1 /TIER=ConsEnd /STK=0 /UG=Rn.61020 /UG_TITLE=ESTs, Moderately similar to SMF1_HUMAN SWISNF-RELATED, MATRIX-ASSOCIATED, ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY F MEMBER 1 (SWI-SNF COMPLEX PROTEIN P270) (B120) (H.sapiens) BG667685 AT rich interactive domain 1B (Swi1 like) Arid1b 282546 NM_172157 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0016514 // SWI/SNF complex // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1397668_at H34328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H34328 /DB_XREF=gi:979745 /DB_XREF=EST111174 /CLONE=RPNBS19 /FEA=EST /CNT=4 /TID=Rn.76528.1 /TIER=ConsEnd /STK=0 /UG=Rn.76528 /UG_TITLE=ESTs H34328 1397669_at BG666098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG666098 /DB_XREF=gi:13888020 /DB_XREF=DRACNH05 /CLONE=DRACNH05 /FEA=EST /CNT=4 /TID=Rn.48082.1 /TIER=ConsEnd /STK=0 /UG=Rn.48082 /UG_TITLE=ESTs BG666098 similar to Fgfr1 oncogene partner LOC683722 683722 NM_001101008 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0034453 // microtubule anchoring // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0030292 // protein tyrosine kinase inhibitor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation 1397670_at BG664324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664324 /DB_XREF=gi:13886246 /DB_XREF=DRABCD01 /CLONE=DRABCD01 /FEA=EST /CNT=4 /TID=Rn.73500.1 /TIER=ConsEnd /STK=0 /UG=Rn.73500 /UG_TITLE=ESTs BG664324 ATG12 autophagy related 12 homolog (S. cerevisiae) Atg12 361321 NM_001038495 0000045 // autophagic vacuole assembly // inferred from electronic annotation /// 0000045 // autophagic vacuole assembly // not recorded /// 0006914 // autophagy // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0034045 // pre-autophagosomal structure membrane // inferred from electronic annotation /// 0034045 // pre-autophagosomal structure membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1397671_at AW919211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW919211 /DB_XREF=gi:8085002 /DB_XREF=EST350515 /CLONE=RGIFK35 /FEA=EST /CNT=4 /TID=Rn.55321.1 /TIER=ConsEnd /STK=0 /UG=Rn.55321 /UG_TITLE=ESTs AW919211 1397672_at AT006319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AT006319 /DB_XREF=gi:15717624 /DB_XREF=AT006319 /CLONE=152-P0-3-2 /FEA=EST /CNT=4 /TID=Rn.51837.1 /TIER=ConsEnd /STK=0 /UG=Rn.51837 /UG_TITLE=ESTs AT006319 1397673_at AW523660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523660 /DB_XREF=gi:7166045 /DB_XREF=UI-R-BO0-aic-f-09-0-UI.s1 /CLONE=UI-R-BO0-aic-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.45704.1 /TIER=ConsEnd /STK=0 /UG=Rn.45704 /UG_TITLE=ESTs AW523660 1397674_at AI502930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502930 /DB_XREF=gi:4400781 /DB_XREF=UI-R-C1-kr-a-02-0-UI.s1 /CLONE=UI-R-C1-kr-a-02-0-UI /FEA=EST /CNT=4 /TID=Rn.27380.1 /TIER=ConsEnd /STK=0 /UG=Rn.27380 /UG_TITLE=ESTs, Highly similar to IF38_HUMAN EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 8 (H.sapiens) AI502930 eukaryotic translation initiation factor 3, subunit C Eif3c 293484 NM_001100662 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // not recorded /// 0006413 // translational initiation // inferred from sequence or structural similarity /// 0006413 // translational initiation // inferred from electronic annotation /// 0045948 // positive regulation of translational initiation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from electronic annotation /// 0005852 // eukaryotic translation initiation factor 3 complex // not recorded /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from sequence or structural similarity 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003743 // translation initiation factor activity // not recorded /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded 1397675_at H31800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31800 /DB_XREF=gi:977217 /DB_XREF=EST106211 /CLONE=RPCAY37 /FEA=EST /CNT=4 /TID=Rn.79423.1 /TIER=ConsEnd /STK=0 /UG=Rn.79423 /UG_TITLE=ESTs, Highly similar to eukaryotic translation initiation factor 4H, isoform 2 (Homo sapiens) (H.sapiens) H31800 eukaryotic translation initiation factor 4H Eif4h 288599 NM_001006957 0006412 // translation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1397676_at BF290784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290784 /DB_XREF=gi:11221854 /DB_XREF=EST455375 /CLONE=RGIIE08 /FEA=EST /CNT=4 /TID=Rn.56120.1 /TIER=ConsEnd /STK=0 /UG=Rn.56120 /UG_TITLE=ESTs BF290784 1397677_at AI501069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501069 /DB_XREF=gi:4398920 /DB_XREF=UI-R-C2p-rt-g-03-0-UI.s1 /CLONE=UI-R-C2p-rt-g-03-0-UI /FEA=EST /CNT=4 /TID=Rn.36701.1 /TIER=ConsEnd /STK=0 /UG=Rn.36701 /UG_TITLE=ESTs, Highly similar to GNT5 RAT ALPHA-1,3(6)-MANNOSYLGLYCOPROTEIN BETA-1,6-N-ACETYL-GLUCOSAMINYLTRANSFERASE V (R.norvegicus) AI501069 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase Mgat5 65271 NM_023095 0006487 // protein N-linked glycosylation // inferred from electronic annotation /// 0006487 // protein N-linked glycosylation // not recorded /// 0008152 // metabolic process // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008375 // acetylglucosaminyltransferase activity // not recorded /// 0008375 // acetylglucosaminyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030144 // alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity // inferred from electronic annotation 1397678_at BF567578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567578 /DB_XREF=gi:11677308 /DB_XREF=UI-R-BO0-agq-g-06-0-UI.r1 /CLONE=UI-R-BO0-agq-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.55656.1 /TIER=ConsEnd /STK=0 /UG=Rn.55656 /UG_TITLE=ESTs BF567578 1397679_at BF550199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550199 /DB_XREF=gi:11659929 /DB_XREF=UI-R-E0-cx-d-08-0-UI.r1 /CLONE=UI-R-E0-cx-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.51684.1 /TIER=ConsEnd /STK=0 /UG=Rn.51684 /UG_TITLE=ESTs BF550199 1397680_at BF288560 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288560 /DB_XREF=gi:11219630 /DB_XREF=EST453151 /CLONE=RGIGU94 /FEA=EST /CNT=3 /TID=Rn.55618.1 /TIER=ConsEnd /STK=0 /UG=Rn.55618 /UG_TITLE=ESTs BF288560 1397681_at BG663123 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663123 /DB_XREF=gi:13885045 /DB_XREF=DRA08E09 /CLONE=DRA08E09 /FEA=EST /CNT=3 /TID=Rn.79343.1 /TIER=ConsEnd /STK=0 /UG=Rn.79343 /UG_TITLE=ESTs BG663123 similar to hypothetical protein FLJ20154 RGD1305793 309456 NM_001127484 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1397682_at AW917689 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917689 /DB_XREF=gi:8083446 /DB_XREF=EST348993 /CLONE=RGIEG84 /FEA=EST /CNT=3 /TID=Rn.55914.1 /TIER=ConsEnd /STK=0 /UG=Rn.55914 /UG_TITLE=ESTs AW917689 1397683_at BM386779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386779 /DB_XREF=gi:18186832 /DB_XREF=UI-R-CN1-cjg-p-22-0-UI.s1 /CLONE=UI-R-CN1-cjg-p-22-0-UI /FEA=EST /CNT=3 /TID=Rn.49304.1 /TIER=ConsEnd /STK=0 /UG=Rn.49304 /UG_TITLE=ESTs BM386779 WD repeat domain 55 Wdr55 307494 NM_001017932 0006364 // rRNA processing // not recorded /// 0006364 // rRNA processing // inferred from electronic annotation /// 0006364 // rRNA processing // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 1397684_at BF549625 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549625 /DB_XREF=gi:11659355 /DB_XREF=UI-R-C2-nd-b-05-0-UI.r1 /CLONE=UI-R-C2-nd-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.44861.1 /TIER=ConsEnd /STK=0 /UG=Rn.44861 /UG_TITLE=ESTs BF549625 dickkopf homolog 2 (Xenopus laevis) Dkk2 295445 NM_001106472 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 1397685_at BF553180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF553180 /DB_XREF=gi:11662910 /DB_XREF=UI-R-C2-nj-e-01-0-UI.r1 /CLONE=UI-R-C2-nj-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.52800.1 /TIER=ConsEnd /STK=0 /UG=Rn.52800 /UG_TITLE=ESTs BF553180 1397686_at BF566984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF566984 /DB_XREF=gi:11676714 /DB_XREF=UI-R-BJ0p-afz-g-10-0-UI.r1 /CLONE=UI-R-BJ0p-afz-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.64222.1 /TIER=ConsEnd /STK=0 /UG=Rn.64222 /UG_TITLE=ESTs BF566984 Proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 Psmd9 161475 NM_130430 0006915 // apoptosis // inferred from mutant phenotype /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0032024 // positive regulation of insulin secretion // inferred from direct assay /// 0045941 // positive regulation of transcription // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046676 // negative regulation of insulin secretion // inferred from mutant phenotype /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070682 // proteasome regulatory particle assembly // not recorded /// 0070682 // proteasome regulatory particle assembly // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay 0003713 // transcription coactivator activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // inferred from direct assay /// 0043425 // bHLH transcription factor binding // inferred from direct assay 1397687_at BF563260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563260 /DB_XREF=gi:11672990 /DB_XREF=UI-R-BO1-ajh-g-12-0-UI.r1 /CLONE=UI-R-BO1-ajh-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.64139.1 /TIER=ConsEnd /STK=0 /UG=Rn.64139 /UG_TITLE=ESTs BF563260 1397688_at BG667330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG667330 /DB_XREF=gi:13889252 /DB_XREF=DRABNE07 /CLONE=DRABNE07 /FEA=EST /CNT=3 /TID=Rn.61597.1 /TIER=ConsEnd /STK=0 /UG=Rn.61597 /UG_TITLE=ESTs BG667330 protocadherin 9 Pcdh9 306091 NM_001191688 /// XM_001073608 /// XM_001073640 /// XM_001073680 /// XM_002728301 /// XM_002728302 /// XM_224429 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0030900 // forebrain development // inferred from expression pattern 0005886 // plasma membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1397689_at BF288445 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288445 /DB_XREF=gi:11219515 /DB_XREF=EST453036 /CLONE=RGIGT89 /FEA=EST /CNT=3 /TID=Rn.55596.1 /TIER=ConsEnd /STK=0 /UG=Rn.55596 /UG_TITLE=ESTs BF288445 1397690_at BF394566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394566 /DB_XREF=gi:11379432 /DB_XREF=UI-R-CA0-bfx-c-11-0-UI.s1 /CLONE=UI-R-CA0-bfx-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.47015.1 /TIER=ConsEnd /STK=0 /UG=Rn.47015 /UG_TITLE=ESTs BF394566 1397691_at BF548460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548460 /DB_XREF=gi:11639567 /DB_XREF=UI-R-A0-aa-g-01-0-UI.r1 /CLONE=UI-R-A0-aa-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.34981.1 /TIER=ConsEnd /STK=0 /UG=Rn.34981 /UG_TITLE=ESTs BF548460 1397692_at BE104820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104820 /DB_XREF=gi:8496920 /DB_XREF=UI-R-BX0-aru-a-08-0-UI.s1 /CLONE=UI-R-BX0-aru-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.50685.1 /TIER=ConsEnd /STK=0 /UG=Rn.50685 /UG_TITLE=ESTs, Highly similar to TIA1 MOUSE NUCLEOLYSIN TIA-1 (M.musculus) BE104820 TIA1 cytotoxic granule-associated RNA binding protein Tia1 312510 NM_001012096 0017148 // negative regulation of translation // not recorded /// 0042036 // negative regulation of cytokine biosynthetic process // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0017091 // AU-rich element binding // not recorded 1397693_at BG662620 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG662620 /DB_XREF=gi:13884542 /DB_XREF=DRAAJF06 /CLONE=DRAAJF06 /FEA=EST /CNT=3 /TID=Rn.72577.1 /TIER=ConsEnd /STK=0 /UG=Rn.72577 /UG_TITLE=ESTs, Moderately similar to eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked (Mus musculus) (M.musculus) BG662620 eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked Eif2s3x 299027 NM_001100542 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // not recorded /// 0006413 // translational initiation // inferred from electronic annotation 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003743 // translation initiation factor activity // not recorded /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0008135 // translation factor activity, nucleic acid binding // not recorded /// 0008135 // translation factor activity, nucleic acid binding // inferred from electronic annotation 1397694_at BF288347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288347 /DB_XREF=gi:11219417 /DB_XREF=EST452938 /CLONE=RGIGS68 /FEA=EST /CNT=3 /TID=Rn.55554.1 /TIER=ConsEnd /STK=0 /UG=Rn.55554 /UG_TITLE=ESTs BF288347 ELMO/CED-12 domain containing 3 Elmod3 297342 NM_001013087 0006909 // phagocytosis // inferred from electronic annotation 0005856 // cytoskeleton // inferred from electronic annotation 1397695_at BF386452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386452 /DB_XREF=gi:11371276 /DB_XREF=UI-R-CA1-bbd-f-09-0-UI.s1 /CLONE=UI-R-CA1-bbd-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.56274.1 /TIER=ConsEnd /STK=0 /UG=Rn.56274 /UG_TITLE=ESTs BF386452 1397696_at BF546570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546570 /DB_XREF=gi:11637677 /DB_XREF=UI-R-C1-le-h-12-0-UI.r1 /CLONE=UI-R-C1-le-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.78623.1 /TIER=ConsEnd /STK=0 /UG=Rn.78623 /UG_TITLE=ESTs BF546570 similar to cDNA sequence BC003331 RGD1307830 304863 XM_001065284 /// XM_002728012 /// XM_222746 0055114 // oxidation reduction // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1397697_at BF558764 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558764 /DB_XREF=gi:11668494 /DB_XREF=UI-R-A1-ds-h-03-0-UI.r1 /CLONE=UI-R-A1-ds-h-03-0-UI /FEA=EST /CNT=3 /TID=Rn.79087.1 /TIER=ConsEnd /STK=0 /UG=Rn.79087 /UG_TITLE=ESTs BF558764 Eukaryotic translation initiation factor 4A2 Eif4a2 303831 NM_001008335 0006412 // translation // inferred from electronic annotation /// 0051789 // response to protein stimulus // not recorded 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1397698_at AW917627 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917627 /DB_XREF=gi:8083382 /DB_XREF=EST348931 /CLONE=RGIEG19 /FEA=EST /CNT=3 /TID=Rn.53924.1 /TIER=ConsEnd /STK=0 /UG=Rn.53924 /UG_TITLE=ESTs AW917627 1397699_at BF288726 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288726 /DB_XREF=gi:11219706 /DB_XREF=EST453227 /CLONE=RGIGV75 /FEA=EST /CNT=3 /TID=Rn.55630.1 /TIER=ConsEnd /STK=0 /UG=Rn.55630 /UG_TITLE=ESTs BF288726 dihydroxyacetone kinase 2 homolog (S. cerevisiae) Dak 361730 NM_001039031 0006071 // glycerol metabolic process // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004371 // glycerone kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0034012 // FAD-AMP lyase (cyclizing) activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397700_x_at BG670822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670822 /DB_XREF=gi:13892921 /DB_XREF=DRNBGB07 /CLONE=DRNBGB07 /FEA=EST /CNT=3 /TID=Rn.59778.1 /TIER=ConsEnd /STK=0 /UG=Rn.59778 /UG_TITLE=ESTs BG670822 1397701_at BF290198 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290198 /DB_XREF=gi:11221268 /DB_XREF=EST454789 /CLONE=RGIHT65 /FEA=EST /CNT=3 /TID=Rn.55908.1 /TIER=ConsEnd /STK=0 /UG=Rn.55908 /UG_TITLE=ESTs BF290198 1397702_at BF551921 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551921 /DB_XREF=gi:11661651 /DB_XREF=UI-R-C2p-ob-f-02-0-UI.r1 /CLONE=UI-R-C2p-ob-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.27189.1 /TIER=ConsEnd /STK=0 /UG=Rn.27189 /UG_TITLE=ESTs BF551921 KIAA1440-like LOC100365889 100365889 XM_002724782 1397703_at BF288942 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288942 /DB_XREF=gi:11220012 /DB_XREF=EST453533 /CLONE=RGIGZ54 /FEA=EST /CNT=3 /TID=Rn.55680.1 /TIER=ConsEnd /STK=0 /UG=Rn.55680 /UG_TITLE=ESTs BF288942 similar to chromosome 7 open reading frame 23 RGD1562351 499990 NM_001109219 1397704_at BF407449 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407449 /DB_XREF=gi:11395424 /DB_XREF=UI-R-BJ2-bqs-d-04-0-UI.s1 /CLONE=UI-R-BJ2-bqs-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.61051.1 /TIER=ConsEnd /STK=0 /UG=Rn.61051 /UG_TITLE=ESTs BF407449 1397705_at BF542792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542792 /DB_XREF=gi:11633899 /DB_XREF=UI-R-C3-sr-d-12-0-UI.r1 /CLONE=UI-R-C3-sr-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.52580.1 /TIER=ConsEnd /STK=0 /UG=Rn.52580 /UG_TITLE=ESTs BF542792 neuroligin 2 Nlgn2 117096 NM_053992 0002087 // regulation of respiratory gaseous exchange by neurological system process // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0050804 // regulation of synaptic transmission // not recorded /// 0050808 // synapse organization // inferred from direct assay 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045202 // synapse // not recorded 1397706_at BF388794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388794 /DB_XREF=gi:11373618 /DB_XREF=UI-R-BS2-bde-f-04-0-UI.s1 /CLONE=UI-R-BS2-bde-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.48640.1 /TIER=ConsEnd /STK=0 /UG=Rn.48640 /UG_TITLE=ESTs BF388794 1397707_at BF415758 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415758 /DB_XREF=gi:11403747 /DB_XREF=UI-R-CA0-bke-d-08-0-UI.s1 /CLONE=UI-R-CA0-bke-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.62806.1 /TIER=ConsEnd /STK=0 /UG=Rn.62806 /UG_TITLE=ESTs BF415758 1397708_at BI289555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289555 /DB_XREF=gi:14947246 /DB_XREF=UI-R-DK0-cff-d-10-0-UI.s1 /CLONE=UI-R-DK0-cff-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.32209.1 /TIER=ConsEnd /STK=0 /UG=Rn.32209 /UG_TITLE=ESTs, Weakly similar to S54984 hypothetical protein - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BI289555 hypothetical LOC288978 LOC288978 288978 NM_001134500 1397709_at BG672259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672259 /DB_XREF=gi:13894358 /DB_XREF=DRNCEE04 /CLONE=DRNCEE04 /FEA=EST /CNT=3 /TID=Rn.40629.1 /TIER=ConsEnd /STK=0 /UG=Rn.40629 /UG_TITLE=ESTs BG672259 ADP-ribosylation factor-like 6 interacting protein 1 Arl6ip1 293551 NM_198737 0006613 // cotranslational protein targeting to membrane // inferred from electronic annotation /// 0006613 // cotranslational protein targeting to membrane // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005784 // Sec61 translocon complex // inferred from electronic annotation /// 0005784 // Sec61 translocon complex // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1397710_at BF284362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284362 /DB_XREF=gi:11215432 /DB_XREF=EST448953 /CLONE=RGIEO72 /FEA=EST /CNT=3 /TID=Rn.55263.1 /TIER=ConsEnd /STK=0 /UG=Rn.55263 /UG_TITLE=ESTs BF284362 1397711_at AI555694 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555694 /DB_XREF=gi:4488057 /DB_XREF=UI-R-C2p-ra-f-11-0-UI.s1 /CLONE=UI-R-C2p-ra-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.31613.1 /TIER=ConsEnd /STK=0 /UG=Rn.31613 /UG_TITLE=ESTs AI555694 1397712_at BF290256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290256 /DB_XREF=gi:11221326 /DB_XREF=EST454847 /CLONE=RGIHU39 /FEA=EST /CNT=3 /TID=Rn.55918.1 /TIER=ConsEnd /STK=0 /UG=Rn.55918 /UG_TITLE=ESTs BF290256 establishment of cohesion 1 homolog 1 (S. cerevisiae) Esco1 680014 NM_001126299 0006281 // DNA repair // inferred from electronic annotation 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation 1397713_at AW917120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW917120 /DB_XREF=gi:8082862 /DB_XREF=EST348424 /CLONE=RGIDZ48 /FEA=EST /CNT=3 /TID=Rn.55237.1 /TIER=ConsEnd /STK=0 /UG=Rn.55237 /UG_TITLE=ESTs AW917120 1397714_at BF565706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565706 /DB_XREF=gi:11675436 /DB_XREF=UI-R-BO1-ajp-b-08-0-UI.r1 /CLONE=UI-R-BO1-ajp-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.64196.1 /TIER=ConsEnd /STK=0 /UG=Rn.64196 /UG_TITLE=ESTs BF565706 similar to RIKEN cDNA 2310035C23 RGD1307235 309053 NM_001134546 0005488 // binding // inferred from electronic annotation 1397715_at AI716475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716475 /DB_XREF=gi:5033728 /DB_XREF=UI-R-Y0-ach-e-04-0-UI.s1 /CLONE=UI-R-Y0-ach-e-04-0-UI /FEA=EST /CNT=3 /TID=Rn.63774.1 /TIER=ConsEnd /STK=0 /UG=Rn.63774 /UG_TITLE=ESTs AI716475 1397716_at AI547852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547852 /DB_XREF=gi:4465340 /DB_XREF=UI-R-C3-sk-f-10-0-UI.s1 /CLONE=UI-R-C3-sk-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.44967.1 /TIER=ConsEnd /STK=0 /UG=Rn.44967 /UG_TITLE=ESTs AI547852 Kelch domain containing 2 Klhdc2 299113 NM_001034133 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1397717_at BF285031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285031 /DB_XREF=gi:11216101 /DB_XREF=EST449622 /CLONE=RGIEY77 /FEA=EST /CNT=3 /TID=Rn.76735.1 /TIER=ConsEnd /STK=0 /UG=Rn.76735 /UG_TITLE=ESTs, Weakly similar to E.coli YCAC like (Caenorhabditis elegans) (C.elegans) BF285031 isochorismatase domain containing 2b Isoc2b 361501 NM_001008367 0008152 // metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation 1397718_at BF287983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287983 /DB_XREF=gi:11219053 /DB_XREF=EST452574 /CLONE=RGIGN67 /FEA=EST /CNT=3 /TID=Rn.55478.1 /TIER=ConsEnd /STK=0 /UG=Rn.55478 /UG_TITLE=ESTs BF287983 1397719_at AI716857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716857 /DB_XREF=gi:5034113 /DB_XREF=UI-R-Y0-aci-a-05-0-UI.s1 /CLONE=UI-R-Y0-aci-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.40887.1 /TIER=ConsEnd /STK=0 /UG=Rn.40887 /UG_TITLE=ESTs AI716857 1397720_at BF288268 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288268 /DB_XREF=gi:11219338 /DB_XREF=EST452859 /CLONE=RGIGR76 /FEA=EST /CNT=3 /TID=Rn.56077.1 /TIER=ConsEnd /STK=0 /UG=Rn.56077 /UG_TITLE=ESTs BF288268 1397721_at AW531134 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531134 /DB_XREF=gi:7173548 /DB_XREF=UI-R-BT1-akv-b-03-0-UI.s1 /CLONE=UI-R-BT1-akv-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.42811.1 /TIER=ConsEnd /STK=0 /UG=Rn.42811 /UG_TITLE=ESTs AW531134 Similar to Ankyrin repeat domain-containing protein 28 LOC691770 691770 XM_001079587 /// XM_002726158 1397722_at BF419387 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419387 /DB_XREF=gi:11407376 /DB_XREF=UI-R-CA1-bnr-a-11-0-UI.s1 /CLONE=UI-R-CA1-bnr-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.63496.1 /TIER=ConsEnd /STK=0 /UG=Rn.63496 /UG_TITLE=ESTs BF419387 1397723_s_at AA875071 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875071 /DB_XREF=gi:4230952 /DB_XREF=UI-R-E0-cf-e-02-0-UI.s1 /CLONE=UI-R-E0-cf-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.65494.1 /TIER=ConsEnd /STK=0 /UG=Rn.65494 /UG_TITLE=ESTs AA875071 rabaptin, RAB GTPase binding effector protein 2 /// rabaptin, RAB GTPase binding effector protein 2 LOC100360815 /// Rabep2 100360815 /// 80754 NM_030585 /// XM_002728794 0006810 // transport // inferred from electronic annotation /// 0006897 // endocytosis // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation 1397724_at BF412617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412617 /DB_XREF=gi:11400606 /DB_XREF=UI-R-BT1-bnp-h-10-0-UI.s1 /CLONE=UI-R-BT1-bnp-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.51260.1 /TIER=ConsEnd /STK=0 /UG=Rn.51260 /UG_TITLE=ESTs BF412617 1397725_at BE119393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119393 /DB_XREF=gi:8511498 /DB_XREF=UI-R-CA0-bac-a-08-0-UI.s1 /CLONE=UI-R-CA0-bac-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.53231.1 /TIER=ConsEnd /STK=0 /UG=Rn.53231 /UG_TITLE=ESTs BE119393 1397726_at AI178632 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178632 /DB_XREF=gi:4135086 /DB_XREF=EST222312 /CLONE=RPLCT63 /FEA=EST /CNT=3 /TID=Rn.55488.1 /TIER=ConsEnd /STK=0 /UG=Rn.55488 /UG_TITLE=ESTs, Weakly similar to T17365 serinethreonine protein kinase TAO1 - rat (R.norvegicus) AI178632 TAO kinase 3 Taok3 304530 NM_001024254 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000165 // MAPKKK cascade // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // not recorded /// 0046330 // positive regulation of JNK cascade // inferred from electronic annotation /// 0046330 // positive regulation of JNK cascade // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016740 // transferase activity // not recorded 1397727_at BE100341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100341 /DB_XREF=gi:8492231 /DB_XREF=UI-R-BJ1-att-d-05-0-UI.s1 /CLONE=UI-R-BJ1-att-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.47889.1 /TIER=ConsEnd /STK=0 /UG=Rn.47889 /UG_TITLE=ESTs BE100341 1397728_at AI113065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113065 /DB_XREF=gi:3513014 /DB_XREF=UI-R-E1-fj-c-01-0-UI.s1 /CLONE=UI-R-E1-fj-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.26904.1 /TIER=ConsEnd /STK=0 /UG=Rn.26904 /UG_TITLE=ESTs AI113065 1397729_x_at BF283642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283642 /DB_XREF=gi:11214712 /DB_XREF=EST448233 /CLONE=RGIEE94 /FEA=EST /CNT=3 /TID=Rn.39346.1 /TIER=ConsEnd /STK=0 /UG=Rn.39346 /UG_TITLE=ESTs BF283642 similar to RIKEN cDNA 1600029D21 LOC363060 363060 NM_001014209 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1397730_at C06959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:C06959 /DB_XREF=gi:1503735 /DB_XREF=C06959 /FEA=EST /CNT=3 /TID=Rn.53947.1 /TIER=ConsEnd /STK=0 /UG=Rn.53947 /UG_TITLE=ESTs C06959 similar to RIKEN cDNA 2310035C23 RGD1307235 309053 NM_001134546 0005488 // binding // inferred from electronic annotation 1397731_at AA998060 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998060 /DB_XREF=gi:4287235 /DB_XREF=UI-R-C0-id-b-05-0-UI.s1 /CLONE=UI-R-C0-id-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.51484.1 /TIER=ConsEnd /STK=0 /UG=Rn.51484 /UG_TITLE=ESTs AA998060 1397732_at BF408724 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408724 /DB_XREF=gi:11396699 /DB_XREF=UI-R-BT1-bnf-d-02-0-UI.s1 /CLONE=UI-R-BT1-bnf-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.62173.1 /TIER=ConsEnd /STK=0 /UG=Rn.62173 /UG_TITLE=ESTs BF408724 1397733_at AI578257 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI578257 /DB_XREF=gi:4562633 /DB_XREF=UI-R-G0-ui-e-11-0-UI.s2 /CLONE=UI-R-G0-ui-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.61120.1 /TIER=ConsEnd /STK=0 /UG=Rn.61120 /UG_TITLE=ESTs AI578257 2-oxoglutarate and iron-dependent oxygenase domain containing 2 Ogfod2 288657 NM_001105927 0055114 // oxidation reduction // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation 1397734_at AW524780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524780 /DB_XREF=gi:7167165 /DB_XREF=UI-R-BO0-ahy-c-04-0-UI.s1 /CLONE=UI-R-BO0-ahy-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.39121.1 /TIER=ConsEnd /STK=0 /UG=Rn.39121 /UG_TITLE=ESTs AW524780 1397735_at BF289741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289741 /DB_XREF=gi:11220811 /DB_XREF=EST454332 /CLONE=RGIHK48 /FEA=EST /CNT=3 /TID=Rn.55818.1 /TIER=ConsEnd /STK=0 /UG=Rn.55818 /UG_TITLE=ESTs, Weakly similar to S17447 probable ligand-binding protein RY2G5 - rat (R.norvegicus) BF289741 bactericidal/permeability-increasing protein-like 3 Bpil3 311558 NM_001107791 0008289 // lipid binding // inferred from electronic annotation 1397736_at BI290200 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290200 /DB_XREF=gi:14948551 /DB_XREF=UI-R-DK0-cft-d-06-0-UI.s1 /CLONE=UI-R-DK0-cft-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.47883.1 /TIER=ConsEnd /STK=0 /UG=Rn.47883 /UG_TITLE=ESTs, Highly similar to CA26 MOUSE COLLAGEN ALPHA 2(VI) CHAIN PRECURSOR (M.musculus) BI290200 claudin 22 Cldn22 306454 NM_001110143 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 1397737_at BF391084 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391084 /DB_XREF=gi:11375931 /DB_XREF=UI-R-CA1-bcd-a-03-0-UI.s1 /CLONE=UI-R-CA1-bcd-a-03-0-UI /FEA=EST /CNT=3 /TID=Rn.61385.1 /TIER=ConsEnd /STK=0 /UG=Rn.61385 /UG_TITLE=ESTs BF391084 t-complex 11 like 1 Tcp11l1 499846 NM_001109202 1397738_at BF416112 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416112 /DB_XREF=gi:11404101 /DB_XREF=UI-R-CA0-bkq-d-03-0-UI.s1 /CLONE=UI-R-CA0-bkq-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.51092.1 /TIER=ConsEnd /STK=0 /UG=Rn.51092 /UG_TITLE=ESTs BF416112 1397739_at BF395799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395799 /DB_XREF=gi:11380770 /DB_XREF=UI-R-BT1-bkc-d-10-0-UI.s1 /CLONE=UI-R-BT1-bkc-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.58449.1 /TIER=ConsEnd /STK=0 /UG=Rn.58449 /UG_TITLE=ESTs, Moderately similar to ADT1 RAT ADP,ATP CARRIER PROTEIN, HEARTSKELETAL MUSCLE ISOFORM T1 (R.norvegicus) BF395799 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31-like LOC100364813 100364813 XM_002725935 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1397740_at AA964229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964229 /DB_XREF=gi:4279105 /DB_XREF=UI-R-E1-gl-b-06-0-UI.s1 /CLONE=UI-R-E1-gl-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.43721.1 /TIER=ConsEnd /STK=0 /UG=Rn.43721 /UG_TITLE=ESTs AA964229 sideroflexin 1 Sfxn1 364678 NM_001012213 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006826 // iron ion transport // inferred from electronic annotation /// 0006826 // iron ion transport // not recorded /// 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008324 // cation transmembrane transporter activity // inferred from electronic annotation 1397741_at AI548915 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548915 /DB_XREF=gi:4466403 /DB_XREF=UI-R-C3-tp-f-09-0-UI.s1 /CLONE=UI-R-C3-tp-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.64247.1 /TIER=ConsEnd /STK=0 /UG=Rn.64247 /UG_TITLE=ESTs, Weakly similar to V-1 protein (Rattus norvegicus) (R.norvegicus) AI548915 ankyrin repeat domain 52 Ankrd52 362811 NM_001191875 /// XM_001070685 /// XM_343139 0005515 // protein binding // not recorded 1397742_at AW920132 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920132 /DB_XREF=gi:8086044 /DB_XREF=EST351540 /CLONE=RGIGS79 /FEA=EST /CNT=3 /TID=Rn.55558.1 /TIER=ConsEnd /STK=0 /UG=Rn.55558 /UG_TITLE=ESTs AW920132 1397743_at BF410216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410216 /DB_XREF=gi:11398191 /DB_XREF=UI-R-CA1-bju-h-06-0-UI.s1 /CLONE=UI-R-CA1-bju-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.50770.1 /TIER=ConsEnd /STK=0 /UG=Rn.50770 /UG_TITLE=ESTs BF410216 1397744_at BI276183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI276183 /DB_XREF=gi:14920852 /DB_XREF=UI-R-CX0-bxf-a-11-0-UI.s1 /CLONE=UI-R-CX0-bxf-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.27982.1 /TIER=ConsEnd /STK=0 /UG=Rn.27982 /UG_TITLE=ESTs BI276183 1397745_at BF414336 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414336 /DB_XREF=gi:11402290 /DB_XREF=UI-R-BJ2-boo-h-01-0-UI.s1 /CLONE=UI-R-BJ2-boo-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.55775.1 /TIER=ConsEnd /STK=0 /UG=Rn.55775 /UG_TITLE=ESTs BF414336 1397746_at BG371972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371972 /DB_XREF=gi:13268509 /DB_XREF=UI-R-CV0-brk-f-08-0-UI.s1 /CLONE=UI-R-CV0-brk-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.66882.1 /TIER=ConsEnd /STK=0 /UG=Rn.66882 /UG_TITLE=ESTs BG371972 kelch domain containing 8A Klhdc8a 305096 NM_001100683 1397747_at BF563958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563958 /DB_XREF=gi:11673688 /DB_XREF=UI-R-C4-akw-f-09-0-UI.r1 /CLONE=UI-R-C4-akw-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.72842.1 /TIER=ConsEnd /STK=0 /UG=Rn.72842 /UG_TITLE=ESTs, Weakly similar to T19745 hypothetical protein C35A5.8 - Caenorhabditis elegans (C.elegans) BF563958 exportin 7 Xpo7 361070 NM_001108386 0006611 // protein export from nucleus // not recorded /// 0006886 // intracellular protein transport // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005643 // nuclear pore // not recorded /// 0005737 // cytoplasm // not recorded 0005049 // nuclear export signal receptor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // inferred from electronic annotation 1397748_at AW521583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521583 /DB_XREF=gi:7163968 /DB_XREF=UI-R-BO0-ago-d-03-0-UI.s1 /CLONE=UI-R-BO0-ago-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.43486.1 /TIER=ConsEnd /STK=0 /UG=Rn.43486 /UG_TITLE=ESTs AW521583 Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) Mrm1 363661 NM_001108832 0006396 // RNA processing // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008173 // RNA methyltransferase activity // inferred from electronic annotation 1397749_at AI715712 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715712 /DB_XREF=gi:5032965 /DB_XREF=UI-R-Y0-abt-a-10-0-UI.s1 /CLONE=UI-R-Y0-abt-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.41320.1 /TIER=ConsEnd /STK=0 /UG=Rn.41320 /UG_TITLE=ESTs AI715712 1397750_at AI145087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145087 /DB_XREF=gi:3666886 /DB_XREF=UI-R-BT0-px-a-01-0-UI.s1 /CLONE=UI-R-BT0-px-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.27799.1 /TIER=ConsEnd /STK=0 /UG=Rn.27799 /UG_TITLE=ESTs AI145087 1397751_at AI547518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547518 /DB_XREF=gi:4465006 /DB_XREF=UI-R-C3-sr-a-09-0-UI.s1 /CLONE=UI-R-C3-sr-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.28552.1 /TIER=ConsEnd /STK=0 /UG=Rn.28552 /UG_TITLE=ESTs AI547518 1397752_at BF386575 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386575 /DB_XREF=gi:11371399 /DB_XREF=UI-R-CA1-bbf-b-02-0-UI.s1 /CLONE=UI-R-CA1-bbf-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.40933.1 /TIER=ConsEnd /STK=0 /UG=Rn.40933 /UG_TITLE=ESTs BF386575 1397753_at BG371999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371999 /DB_XREF=gi:13268536 /DB_XREF=UI-R-CV0-brl-a-09-0-UI.s1 /CLONE=UI-R-CV0-brl-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.66884.1 /TIER=ConsEnd /STK=0 /UG=Rn.66884 /UG_TITLE=ESTs, Weakly similar to T20486 hypothetical protein F01G4.5 - Caenorhabditis elegans (C.elegans) BG371999 phosphatidylinositol glycan anchor biosynthesis, class Q Pigq 287159 NM_001007607 0006506 // GPI anchor biosynthetic process // inferred from electronic annotation /// 0016254 // preassembly of GPI anchor in ER membrane // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0017176 // phosphatidylinositol N-acetylglucosaminyltransferase activity // inferred from electronic annotation 1397754_at BG373236 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG373236 /DB_XREF=gi:13269773 /DB_XREF=UI-R-CV1-brw-d-04-0-UI.s1 /CLONE=UI-R-CV1-brw-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.41663.1 /TIER=ConsEnd /STK=0 /UG=Rn.41663 /UG_TITLE=ESTs BG373236 1397755_at AI575649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575649 /DB_XREF=gi:4560025 /DB_XREF=UI-R-Y0-vi-e-12-0-UI.s1 /CLONE=UI-R-Y0-vi-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.54130.1 /TIER=ConsEnd /STK=0 /UG=Rn.54130 /UG_TITLE=ESTs, Weakly similar to S21348 probable pol polyprotein-related protein 4 - rat (R.norvegicus) AI575649 1397756_at AI549567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549567 /DB_XREF=gi:4467055 /DB_XREF=UI-R-C3-tt-e-01-0-UI.s1 /CLONE=UI-R-C3-tt-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.41643.1 /TIER=ConsEnd /STK=0 /UG=Rn.41643 /UG_TITLE=ESTs AI549567 similar to BC068281 protein RGD1563701 500623 XM_001070724 /// XM_002729606 1397757_at AW523345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523345 /DB_XREF=gi:7165730 /DB_XREF=UI-R-BO0-aif-b-11-0-UI.s1 /CLONE=UI-R-BO0-aif-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.38315.1 /TIER=ConsEnd /STK=0 /UG=Rn.38315 /UG_TITLE=ESTs AW523345 1397758_at BI301535 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301535 /DB_XREF=gi:14977815 /DB_XREF=UI-R-DN0-cit-k-22-0-UI.s1 /CLONE=UI-R-DN0-cit-k-22-0-UI /FEA=EST /CNT=3 /TID=Rn.59068.1 /TIER=ConsEnd /STK=0 /UG=Rn.59068 /UG_TITLE=ESTs BI301535 N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits Gnptab 362865 XM_001079967 /// XM_343194 0009306 // protein secretion // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0046835 // carbohydrate phosphorylation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0008134 // transcription factor binding // inferred from electronic annotation 1397759_at BI296243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296243 /DB_XREF=gi:14960489 /DB_XREF=UI-R-DK0-cey-a-08-0-UI.s1 /CLONE=UI-R-DK0-cey-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.41755.1 /TIER=ConsEnd /STK=0 /UG=Rn.41755 /UG_TITLE=ESTs BI296243 1397760_at BI290156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290156 /DB_XREF=gi:14948464 /DB_XREF=UI-R-DK0-cfs-g-09-0-UI.s1 /CLONE=UI-R-DK0-cfs-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.60653.1 /TIER=ConsEnd /STK=0 /UG=Rn.60653 /UG_TITLE=ESTs BI290156 1397761_at BF419013 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419013 /DB_XREF=gi:11407002 /DB_XREF=UI-R-BJ2-bqm-e-07-0-UI.s1 /CLONE=UI-R-BJ2-bqm-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.63465.1 /TIER=ConsEnd /STK=0 /UG=Rn.63465 /UG_TITLE=ESTs BF419013 WW domain containing E3 ubiquitin protein ligase 1 Wwp1 297930 NM_001024757 0006464 // protein modification process // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded 0005622 // intracellular // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1397762_at AI763952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763952 /DB_XREF=gi:5209887 /DB_XREF=UI-R-Y0-acv-a-11-0-UI.s1 /CLONE=UI-R-Y0-acv-a-11-0-UI /FEA=EST /CNT=3 /TID=Rn.40875.1 /TIER=ConsEnd /STK=0 /UG=Rn.40875 /UG_TITLE=ESTs AI763952 1397763_at BE100891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100891 /DB_XREF=gi:8492792 /DB_XREF=UI-R-BJ1-atx-f-05-0-UI.s1 /CLONE=UI-R-BJ1-atx-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.33977.1 /TIER=ConsEnd /STK=0 /UG=Rn.33977 /UG_TITLE=ESTs BE100891 Similar to RIKEN cDNA 1110059E24 RGD1359158 361740 NM_001007737 1397764_at BG379719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379719 /DB_XREF=gi:13304191 /DB_XREF=UI-R-CS0-btj-d-06-0-UI.s1 /CLONE=UI-R-CS0-btj-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.66634.1 /TIER=ConsEnd /STK=0 /UG=Rn.66634 /UG_TITLE=ESTs BG379719 potassium channel tetramerisation domain containing 5 Kctd5 287109 NM_001105768 0006813 // potassium ion transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from electronic annotation /// 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1397765_at BF406754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406754 /DB_XREF=gi:11394729 /DB_XREF=UI-R-BJ2-bpo-g-02-0-UI.s1 /CLONE=UI-R-BJ2-bpo-g-02-0-UI /FEA=EST /CNT=3 /TID=Rn.65386.1 /TIER=ConsEnd /STK=0 /UG=Rn.65386 /UG_TITLE=ESTs BF406754 1397766_at BI291982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291982 /DB_XREF=gi:14952036 /DB_XREF=UI-R-DN0-civ-l-01-0-UI.s1 /CLONE=UI-R-DN0-civ-l-01-0-UI /FEA=EST /CNT=3 /TID=Rn.34606.1 /TIER=ConsEnd /STK=0 /UG=Rn.34606 /UG_TITLE=ESTs BI291982 1397767_at BG377356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377356 /DB_XREF=gi:13301828 /DB_XREF=UI-R-CU0-bvc-e-06-0-UI.s1 /CLONE=UI-R-CU0-bvc-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.41665.1 /TIER=ConsEnd /STK=0 /UG=Rn.41665 /UG_TITLE=ESTs BG377356 1397768_at BI282074 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282074 /DB_XREF=gi:14932458 /DB_XREF=UI-R-CU0s-cbw-c-02-0-UI.s1 /CLONE=UI-R-CU0s-cbw-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.48250.1 /TIER=ConsEnd /STK=0 /UG=Rn.48250 /UG_TITLE=ESTs BI282074 1397769_at BI303199 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303199 /DB_XREF=gi:14979479 /DB_XREF=UI-R-DQ0-ciz-k-04-0-UI.s1 /CLONE=UI-R-DQ0-ciz-k-04-0-UI /FEA=EST /CNT=3 /TID=Rn.57857.1 /TIER=ConsEnd /STK=0 /UG=Rn.57857 /UG_TITLE=ESTs BI303199 1397770_at BI296453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296453 /DB_XREF=gi:14960890 /DB_XREF=UI-R-CV2-cgr-d-06-0-UI.s1 /CLONE=UI-R-CV2-cgr-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.66997.1 /TIER=ConsEnd /STK=0 /UG=Rn.66997 /UG_TITLE=ESTs BI296453 1397771_at BF407938 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407938 /DB_XREF=gi:11395913 /DB_XREF=UI-R-BJ2-bqy-a-05-0-UI.s1 /CLONE=UI-R-BJ2-bqy-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.61104.1 /TIER=ConsEnd /STK=0 /UG=Rn.61104 /UG_TITLE=ESTs BF407938 1397772_at BF390195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390195 /DB_XREF=gi:11375081 /DB_XREF=UI-R-CA1-bcm-c-07-0-UI.s1 /CLONE=UI-R-CA1-bcm-c-07-0-UI /FEA=EST /CNT=3 /TID=Rn.57114.1 /TIER=ConsEnd /STK=0 /UG=Rn.57114 /UG_TITLE=ESTs BF390195 1397773_at AI136670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136670 /DB_XREF=gi:3637447 /DB_XREF=UI-R-C2p-nq-b-09-0-UI.s1 /CLONE=UI-R-C2p-nq-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.27204.1 /TIER=ConsEnd /STK=0 /UG=Rn.27204 /UG_TITLE=ESTs AI136670 claudin 18 Cldn18 315953 NM_001014096 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation 1397774_at BF290889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290889 /DB_XREF=gi:11221959 /DB_XREF=EST455480 /CLONE=RGIIF80 /FEA=EST /CNT=3 /TID=Rn.55993.1 /TIER=ConsEnd /STK=0 /UG=Rn.55993 /UG_TITLE=ESTs BF290889 family with sequence similarity 63, member B Fam63b 363089 XM_001054973 /// XM_002727085 /// XM_002729937 /// XM_343420 1397775_at BF402577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402577 /DB_XREF=gi:11390552 /DB_XREF=UI-R-CA0-bhm-a-07-0-UI.s1 /CLONE=UI-R-CA0-bhm-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.59518.1 /TIER=ConsEnd /STK=0 /UG=Rn.59518 /UG_TITLE=ESTs BF402577 1397776_at BF409525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409525 /DB_XREF=gi:11397500 /DB_XREF=UI-R-CA1-bll-c-05-0-UI.s1 /CLONE=UI-R-CA1-bll-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.61386.1 /TIER=ConsEnd /STK=0 /UG=Rn.61386 /UG_TITLE=ESTs BF409525 1397777_at AI710453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI710453 /DB_XREF=gi:5000229 /DB_XREF=UI-R-AG1-aak-a-12-0-UI.s1 /CLONE=UI-R-AG1-aak-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.44787.1 /TIER=ConsEnd /STK=0 /UG=Rn.44787 /UG_TITLE=ESTs, Weakly similar to TALI MOUSE TALIN (M.musculus) AI710453 talin 2 Tln2 315776 XM_001056646 /// XM_236367 0007016 // cytoskeletal anchoring at plasma membrane // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005925 // focal adhesion // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0045202 // synapse // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005158 // insulin receptor binding // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1397778_at AI535458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535458 /DB_XREF=gi:4449593 /DB_XREF=UI-R-C3-sy-d-01-0-UI.s1 /CLONE=UI-R-C3-sy-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.34790.1 /TIER=ConsEnd /STK=0 /UG=Rn.34790 /UG_TITLE=ESTs AI535458 1397779_at BF562254 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF562254 /DB_XREF=gi:11671984 /DB_XREF=UI-R-BS0-aoa-g-01-0-UI.r1 /CLONE=UI-R-BS0-aoa-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.18540.1 /TIER=ConsEnd /STK=0 /UG=Rn.18540 /UG_TITLE=ESTs BF562254 1397780_at BE096283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096283 /DB_XREF=gi:8487214 /DB_XREF=UI-R-BU0-ape-c-01-0-UI.s1 /CLONE=UI-R-BU0-ape-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.51089.1 /TIER=ConsEnd /STK=0 /UG=Rn.51089 /UG_TITLE=ESTs BE096283 Armadillo repeat containing 2 Armc2 499470 XM_001069261 /// XM_574794 0005488 // binding // inferred from electronic annotation 1397781_at BF414751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414751 /DB_XREF=gi:11402740 /DB_XREF=UI-R-BJ2-bow-f-06-0-UI.s1 /CLONE=UI-R-BJ2-bow-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.41918.1 /TIER=ConsEnd /STK=0 /UG=Rn.41918 /UG_TITLE=ESTs BF414751 1397782_at BE103050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103050 /DB_XREF=gi:8495149 /DB_XREF=UI-R-BT1-aqr-h-01-0-UI.s1 /CLONE=UI-R-BT1-aqr-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.45991.1 /TIER=ConsEnd /STK=0 /UG=Rn.45991 /UG_TITLE=ESTs, Highly similar to ODO1_HUMAN 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT, MITOCHONDRIAL PRECURSOR (H.sapiens) BE103050 Oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) Ogdh 360975 NM_001017461 0006091 // generation of precursor metabolites and energy // inferred from sequence or structural similarity /// 0006096 // glycolysis // inferred from electronic annotation /// 0006099 // tricarboxylic acid cycle // inferred from direct assay /// 0006103 // 2-oxoglutarate metabolic process // inferred from direct assay /// 0006104 // succinyl-CoA metabolic process // inferred from direct assay /// 0006734 // NADH metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from sequence or structural similarity /// 0045252 // oxoglutarate dehydrogenase complex // inferred from direct assay 0004591 // oxoglutarate dehydrogenase (succinyl-transferring) activity // inferred from direct assay /// 0004591 // oxoglutarate dehydrogenase (succinyl-transferring) activity // inferred from electronic annotation /// 0004591 // oxoglutarate dehydrogenase (succinyl-transferring) activity // inferred from sequence or structural similarity /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016624 // oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor // inferred from electronic annotation /// 0030976 // thiamin pyrophosphate binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from physical interaction /// 0034602 // oxoglutarate dehydrogenase (NAD+) activity // not recorded /// 0051087 // chaperone binding // inferred from physical interaction 1397783_at AW533493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533493 /DB_XREF=gi:7175907 /DB_XREF=UI-R-BU0-ani-e-10-0-UI.s1 /CLONE=UI-R-BU0-ani-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.48128.1 /TIER=ConsEnd /STK=0 /UG=Rn.48128 /UG_TITLE=ESTs AW533493 1397784_at BI297092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297092 /DB_XREF=gi:14962162 /DB_XREF=UI-R-DK0-cdt-b-11-0-UI.s1 /CLONE=UI-R-DK0-cdt-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.53695.1 /TIER=ConsEnd /STK=0 /UG=Rn.53695 /UG_TITLE=ESTs BI297092 1397785_at BE102056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102056 /DB_XREF=gi:8494155 /DB_XREF=UI-R-BO1-aqe-h-02-0-UI.s1 /CLONE=UI-R-BO1-aqe-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.50191.1 /TIER=ConsEnd /STK=0 /UG=Rn.50191 /UG_TITLE=ESTs BE102056 1397786_at BF391927 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391927 /DB_XREF=gi:11376783 /DB_XREF=UI-R-CA0-bfh-c-01-0-UI.s1 /CLONE=UI-R-CA0-bfh-c-01-0-UI /FEA=EST /CNT=3 /TID=Rn.57348.1 /TIER=ConsEnd /STK=0 /UG=Rn.57348 /UG_TITLE=ESTs BF391927 1397787_at BF416511 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416511 /DB_XREF=gi:11404500 /DB_XREF=UI-R-CA0-bkk-e-05-0-UI.s1 /CLONE=UI-R-CA0-bkk-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.63049.1 /TIER=ConsEnd /STK=0 /UG=Rn.63049 /UG_TITLE=ESTs BF416511 1397788_at AW521711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521711 /DB_XREF=gi:7164096 /DB_XREF=UI-R-BO0-ags-h-07-0-UI.s1 /CLONE=UI-R-BO0-ags-h-07-0-UI /FEA=EST /CNT=3 /TID=Rn.45229.1 /TIER=ConsEnd /STK=0 /UG=Rn.45229 /UG_TITLE=ESTs AW521711 1397789_at BF392017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392017 /DB_XREF=gi:11376874 /DB_XREF=UI-R-CA0-bfg-c-05-0-UI.s1 /CLONE=UI-R-CA0-bfg-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.51987.1 /TIER=ConsEnd /STK=0 /UG=Rn.51987 /UG_TITLE=ESTs, Highly similar to JC7168 lens epithelium-derived growth factor (H.sapiens) BF392017 1397790_at BF394731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394731 /DB_XREF=gi:11379689 /DB_XREF=UI-R-CA0-bge-c-04-0-UI.s1 /CLONE=UI-R-CA0-bge-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.58324.1 /TIER=ConsEnd /STK=0 /UG=Rn.58324 /UG_TITLE=ESTs BF394731 rCG41077-like LOC100364612 100364612 XM_002726322 1397791_at BF398985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398985 /DB_XREF=gi:11383989 /DB_XREF=UI-R-CA1-biz-g-24-0-UI.s1 /CLONE=UI-R-CA1-biz-g-24-0-UI /FEA=EST /CNT=3 /TID=Rn.60131.1 /TIER=ConsEnd /STK=0 /UG=Rn.60131 /UG_TITLE=ESTs BF398985 1397792_at BF411652 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411652 /DB_XREF=gi:11399641 /DB_XREF=UI-R-BT1-bmv-a-08-0-UI.s1 /CLONE=UI-R-BT1-bmv-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.61893.1 /TIER=ConsEnd /STK=0 /UG=Rn.61893 /UG_TITLE=ESTs BF411652 1397793_at BF415972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415972 /DB_XREF=gi:11403961 /DB_XREF=UI-R-CA0-bkp-e-06-0-UI.s1 /CLONE=UI-R-CA0-bkp-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.62886.1 /TIER=ConsEnd /STK=0 /UG=Rn.62886 /UG_TITLE=ESTs BF415972 1397794_at BF419704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419704 /DB_XREF=gi:11407693 /DB_XREF=UI-R-CA0-bpf-c-08-0-UI.s1 /CLONE=UI-R-CA0-bpf-c-08-0-UI /FEA=EST /CNT=3 /TID=Rn.63613.1 /TIER=ConsEnd /STK=0 /UG=Rn.63613 /UG_TITLE=ESTs, Weakly similar to CD14 RAT MONOCYTE DIFFERENTIATION ANTIGEN CD14 PRECURSOR (R.norvegicus) BF419704 1397795_at AW533928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533928 /DB_XREF=gi:7176389 /DB_XREF=UI-R-C4-alr-d-02-0-UI.s1 /CLONE=UI-R-C4-alr-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.37932.1 /TIER=ConsEnd /STK=0 /UG=Rn.37932 /UG_TITLE=ESTs AW533928 Advillin Avil 79253 NM_024401 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0007399 // nervous system development // inferred from direct assay 0003779 // actin binding // traceable author statement /// 0003779 // actin binding // inferred from electronic annotation 1397796_at AW526956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526956 /DB_XREF=gi:7169370 /DB_XREF=UI-R-BO1-ajf-h-10-0-UI.s1 /CLONE=UI-R-BO1-ajf-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.46377.1 /TIER=ConsEnd /STK=0 /UG=Rn.46377 /UG_TITLE=ESTs, Weakly similar to 2024339A cleavage stimulation factor (H.sapiens) AW526956 1397797_at BE103164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103164 /DB_XREF=gi:8495303 /DB_XREF=UI-R-BT1-aqx-g-12-0-UI.s1 /CLONE=UI-R-BT1-aqx-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.49556.1 /TIER=ConsEnd /STK=0 /UG=Rn.49556 /UG_TITLE=ESTs BE103164 Tigger transposable element derived 3 Tigd3 309174 NM_001107573 0045449 // regulation of transcription // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation 1397798_at BE120611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120611 /DB_XREF=gi:8512716 /DB_XREF=UI-R-CA0-bav-e-08-0-UI.s1 /CLONE=UI-R-CA0-bav-e-08-0-UI /FEA=EST /CNT=3 /TID=Rn.51806.1 /TIER=ConsEnd /STK=0 /UG=Rn.51806 /UG_TITLE=ESTs BE120611 1397799_at BF393651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393651 /DB_XREF=gi:11378513 /DB_XREF=UI-R-CA0-bga-d-04-0-UI.s1 /CLONE=UI-R-CA0-bga-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.58111.1 /TIER=ConsEnd /STK=0 /UG=Rn.58111 /UG_TITLE=ESTs BF393651 coiled-coil domain containing 40 Ccdc40 287867 NM_001134688 1397800_at BE106592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106592 /DB_XREF=gi:8498694 /DB_XREF=UI-R-BO1-asp-g-05-0-UI.s1 /CLONE=UI-R-BO1-asp-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.62945.1 /TIER=ConsEnd /STK=0 /UG=Rn.62945 /UG_TITLE=ESTs BE106592 1397801_at BF563970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563970 /DB_XREF=gi:11673700 /DB_XREF=UI-R-C4-akx-a-05-0-UI.r1 /CLONE=UI-R-C4-akx-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.64156.1 /TIER=ConsEnd /STK=0 /UG=Rn.64156 /UG_TITLE=ESTs BF563970 1397802_at AI715424 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI715424 /DB_XREF=gi:5032677 /DB_XREF=UI-R-Y0-abm-d-07-0-UI.s1 /CLONE=UI-R-Y0-abm-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.41152.1 /TIER=ConsEnd /STK=0 /UG=Rn.41152 /UG_TITLE=ESTs AI715424 1397803_at BF286911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF286911 /DB_XREF=gi:11217981 /DB_XREF=EST451502 /CLONE=RGIFU40 /FEA=EST /CNT=3 /TID=Rn.55392.1 /TIER=ConsEnd /STK=0 /UG=Rn.55392 /UG_TITLE=ESTs BF286911 1397804_at BF411294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411294 /DB_XREF=gi:11399276 /DB_XREF=UI-R-BT1-bmn-e-10-0-UI.s1 /CLONE=UI-R-BT1-bmn-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.61828.1 /TIER=ConsEnd /STK=0 /UG=Rn.61828 /UG_TITLE=ESTs BF411294 1397805_at BF392600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392600 /DB_XREF=gi:11377457 /DB_XREF=UI-R-CA0-bfl-a-12-0-UI.s1 /CLONE=UI-R-CA0-bfl-a-12-0-UI /FEA=EST /CNT=3 /TID=Rn.58367.1 /TIER=ConsEnd /STK=0 /UG=Rn.58367 /UG_TITLE=ESTs, Weakly similar to S68418 protein phosphatase 1M chain M110 isoform - rat (R.norvegicus) BF392600 ankyrin 1, erythrocytic Ank1 306570 NM_001107322 0006779 // porphyrin biosynthetic process // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0015672 // monovalent inorganic cation transport // not recorded /// 0048821 // erythrocyte development // not recorded 0005634 // nucleus // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0014731 // spectrin-associated cytoskeleton // not recorded /// 0016020 // membrane // not recorded /// 0016529 // sarcoplasmic reticulum // inferred from direct assay /// 0019717 // synaptosome // inferred from direct assay /// 0030018 // Z disc // inferred from direct assay /// 0030673 // axolemma // inferred from direct assay /// 0030863 // cortical cytoskeleton // not recorded /// 0031430 // M band // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008093 // cytoskeletal adaptor activity // not recorded /// 0030507 // spectrin binding // not recorded 1397806_at BF406662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406662 /DB_XREF=gi:11394637 /DB_XREF=UI-R-BJ2-bpv-f-10-0-UI.s1 /CLONE=UI-R-BJ2-bpv-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.64016.1 /TIER=ConsEnd /STK=0 /UG=Rn.64016 /UG_TITLE=ESTs, Weakly similar to RP3A RAT RABPHILIN-3A (R.norvegicus) BF406662 INO80 complex subunit E Ino80e 293494 NM_001013900 1397807_at BF412350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412350 /DB_XREF=gi:11400339 /DB_XREF=UI-R-BT1-bnc-g-09-0-UI.s1 /CLONE=UI-R-BT1-bnc-g-09-0-UI /FEA=EST /CNT=3 /TID=Rn.62063.1 /TIER=ConsEnd /STK=0 /UG=Rn.62063 /UG_TITLE=ESTs BF412350 1397808_at AW920064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920064 /DB_XREF=gi:8085976 /DB_XREF=EST351472 /CLONE=RGIGS02 /FEA=EST /CNT=3 /TID=Rn.55535.1 /TIER=ConsEnd /STK=0 /UG=Rn.55535 /UG_TITLE=ESTs AW920064 1397809_at AW920788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920788 /DB_XREF=gi:8086603 /DB_XREF=EST352092 /CLONE=RGIHC48 /FEA=EST /CNT=3 /TID=Rn.55735.1 /TIER=ConsEnd /STK=0 /UG=Rn.55735 /UG_TITLE=ESTs AW920788 1397810_at BG664708 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664708 /DB_XREF=gi:13886630 /DB_XREF=DRABIE01 /CLONE=DRABIE01 /FEA=EST /CNT=5 /TID=Rn.34472.1 /TIER=ConsEnd /STK=0 /UG=Rn.34472 /UG_TITLE=ESTs BG664708 1397811_at AI137142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137142 /DB_XREF=gi:3637919 /DB_XREF=UI-R-C2p-oe-g-12-0-UI.s1 /CLONE=UI-R-C2p-oe-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.27326.1 /TIER=ConsEnd /STK=0 /UG=Rn.27326 /UG_TITLE=ESTs AI137142 similar to KIAA1731 protein RGD1311723 363018 XM_001069542 /// XM_343351 1397812_at H32530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H32530 /DB_XREF=gi:977947 /DB_XREF=EST107729 /CLONE=RPCCC17 /FEA=EST /CNT=3 /TID=Rn.65479.1 /TIER=ConsEnd /STK=0 /UG=Rn.65479 /UG_TITLE=ESTs, Moderately similar to SUS1_HUMAN SUMO-1-specific protease 1 (Sentrin-specific protease SENP6) (Protease FKSG6) (H.sapiens) H32530 SUMO1/sentrin specific peptidase 6 Senp6 300860 NM_001106842 0006508 // proteolysis // inferred from electronic annotation 0008234 // cysteine-type peptidase activity // inferred from electronic annotation 1397813_at AW915896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915896 /DB_XREF=gi:8081607 /DB_XREF=EST347200 /CLONE=RGIDC23 /FEA=EST /CNT=3 /TID=Rn.43364.1 /TIER=ConsEnd /STK=0 /UG=Rn.43364 /UG_TITLE=ESTs, Highly similar to T00377 KIAA0642 protein (H.sapiens) AW915896 rCG23949-like LOC100362458 100362458 XR_086345 /// XR_086664 1397814_at BI294536 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294536 /DB_XREF=gi:14957082 /DB_XREF=UI-R-DK0-cel-d-04-0-UI.s1 /CLONE=UI-R-DK0-cel-d-04-0-UI /FEA=EST /CNT=3 /TID=Rn.37914.1 /TIER=ConsEnd /STK=0 /UG=Rn.37914 /UG_TITLE=ESTs BI294536 1397815_at BG671292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671292 /DB_XREF=gi:13893391 /DB_XREF=DRNBOC04 /CLONE=DRNBOC04 /FEA=EST /CNT=2 /TID=Rn.68330.1 /TIER=ConsEnd /STK=0 /UG=Rn.68330 /UG_TITLE=ESTs, Weakly similar to ARF6_HUMAN ADP-RIBOSYLATION FACTOR 6 (R.norvegicus) BG671292 ADP-ribosylation factor-like 8B Arl8b 500282 NM_001024332 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007059 // chromosome segregation // not recorded /// 0007067 // mitosis // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030496 // midbody // inferred from electronic annotation /// 0030496 // midbody // not recorded /// 0031902 // late endosome membrane // inferred from electronic annotation /// 0051233 // spindle midzone // inferred from electronic annotation /// 0051233 // spindle midzone // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0019003 // GDP binding // inferred from electronic annotation /// 0019003 // GDP binding // not recorded /// 0043014 // alpha-tubulin binding // inferred from electronic annotation /// 0043014 // alpha-tubulin binding // not recorded /// 0048487 // beta-tubulin binding // inferred from electronic annotation /// 0048487 // beta-tubulin binding // not recorded 1397816_at AW921129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921129 /DB_XREF=gi:8086949 /DB_XREF=EST352433 /CLONE=RGIHN73 /FEA=EST /CNT=2 /TID=Rn.55185.1 /TIER=ConsEnd /STK=0 /UG=Rn.55185 /UG_TITLE=ESTs AW921129 1397817_at BI299276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI299276 /DB_XREF=gi:14975556 /DB_XREF=UI-R-CV2-cht-c-07-0-UI.s1 /CLONE=UI-R-CV2-cht-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.76777.1 /TIER=ConsEnd /STK=0 /UG=Rn.76777 /UG_TITLE=ESTs BI299276 1397818_at BF565302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565302 /DB_XREF=gi:11675032 /DB_XREF=UI-R-BO1-ajk-d-09-0-UI.r1 /CLONE=UI-R-BO1-ajk-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.64184.1 /TIER=ConsEnd /STK=0 /UG=Rn.64184 /UG_TITLE=ESTs BF565302 1397819_at BF550044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF550044 /DB_XREF=gi:11659768 /DB_XREF=UI-R-E0-cp-f-10-0-UI.r1 /CLONE=UI-R-E0-cp-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.52322.1 /TIER=ConsEnd /STK=0 /UG=Rn.52322 /UG_TITLE=ESTs BF550044 proline rich 14 Prr14 691898 XM_001080025 /// XM_002725688 1397820_at BF553729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF553729 /DB_XREF=gi:11663459 /DB_XREF=UI-R-C2p-nz-g-08-0-UI.r1 /CLONE=UI-R-C2p-nz-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.77536.1 /TIER=ConsEnd /STK=0 /UG=Rn.77536 /UG_TITLE=ESTs BF553729 1397821_at BF523355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523355 /DB_XREF=gi:11631322 /DB_XREF=UI-R-G0-ug-d-03-0-UI.r1 /CLONE=UI-R-G0-ug-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.39090.2 /TIER=ConsEnd /STK=0 /UG=Rn.39090 /UG_TITLE=ESTs BF523355 1397822_at BF554794 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554794 /DB_XREF=gi:11664524 /DB_XREF=UI-R-C2p-om-g-01-0-UI.r1 /CLONE=UI-R-C2p-om-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.82567.1 /TIER=ConsEnd /STK=0 /UG=Rn.82567 /UG_TITLE=ESTs BF554794 1397823_at BE117531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117531 /DB_XREF=gi:8509636 /DB_XREF=UI-R-BS1-ayo-h-09-0-UI.s1 /CLONE=UI-R-BS1-ayo-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.51552.1 /TIER=ConsEnd /STK=0 /UG=Rn.51552 /UG_TITLE=ESTs BE117531 1397824_at BG665671 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG665671 /DB_XREF=gi:13887593 /DB_XREF=DRACGC06 /CLONE=DRACGC06 /FEA=EST /CNT=2 /TID=Rn.64433.1 /TIER=ConsEnd /STK=0 /UG=Rn.64433 /UG_TITLE=ESTs BG665671 similar to WAC RGD1562407 307029 XR_086070 /// XR_086657 0005515 // protein binding // inferred from electronic annotation 1397825_at BE109247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109247 /DB_XREF=gi:8501352 /DB_XREF=UI-R-BS1-azd-f-02-0-UI.s1 /CLONE=UI-R-BS1-azd-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.48953.1 /TIER=ConsEnd /STK=0 /UG=Rn.48953 /UG_TITLE=ESTs, Highly similar to T46423 hypothetical protein DKFZp434A0225.1 (H.sapiens) BE109247 ankyrin repeat and IBR domain containing 1 Ankib1 368062 NM_001134781 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397826_at AI677633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI677633 /DB_XREF=gi:4887772 /DB_XREF=ESTRB00013 /CLONE=L-Hipp.L6 /FEA=EST /CNT=2 /TID=Rn.48948.1 /TIER=ConsEnd /STK=0 /UG=Rn.48948 /UG_TITLE=ESTs, Moderately similar to I39062 dematin 52K chain (H.sapiens) AI677633 erythrocyte protein band 4.9 Epb4.9 361069 NM_001108385 0007010 // cytoskeleton organization // inferred from electronic annotation 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // not recorded /// 0030863 // cortical cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation 1397827_at BE112682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112682 /DB_XREF=gi:8504787 /DB_XREF=UI-R-BJ1-avj-e-12-0-UI.s1 /CLONE=UI-R-BJ1-avj-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.52094.1 /TIER=ConsEnd /STK=0 /UG=Rn.52094 /UG_TITLE=ESTs BE112682 nanos homolog 3 (Drosophila) Nanos3 288909 NM_001105945 0007283 // spermatogenesis // not recorded /// 0048477 // oogenesis // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1397828_at BF387796 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387796 /DB_XREF=gi:11372585 /DB_XREF=UI-R-CA1-bbu-d-02-0-UI.s1 /CLONE=UI-R-CA1-bbu-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.70007.1 /TIER=ConsEnd /STK=0 /UG=Rn.70007 /UG_TITLE=ESTs BF387796 SPHK1 interactor, AKAP domain containing Sphkap 316561 NM_001127492 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1397829_at AA943036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943036 /DB_XREF=gi:3102952 /DB_XREF=EST198535 /CLONE=RBRAE07 /FEA=EST /CNT=2 /TID=Rn.55300.1 /TIER=ConsEnd /STK=0 /UG=Rn.55300 /UG_TITLE=ESTs AA943036 1397830_at BF399783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399783 /DB_XREF=gi:11384793 /DB_XREF=UI-R-CA0-bhy-e-10-0-UI.s2 /CLONE=UI-R-CA0-bhy-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.29207.1 /TIER=ConsEnd /STK=0 /UG=Rn.29207 /UG_TITLE=ESTs BF399783 insulin-like growth factor binding protein 5 Igfbp5 25285 NM_012817 0001558 // regulation of cell growth // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0014912 // negative regulation of smooth muscle cell migration // inferred from electronic annotation /// 0014912 // negative regulation of smooth muscle cell migration // not recorded /// 0017148 // negative regulation of translation // inferred from electronic annotation /// 0017148 // negative regulation of translation // not recorded /// 0023034 // intracellular signaling pathway // inferred from expression pattern /// 0030336 // negative regulation of cell migration // not recorded /// 0030336 // negative regulation of cell migration // inferred from electronic annotation /// 0043569 // negative regulation of insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0043569 // negative regulation of insulin-like growth factor receptor signaling pathway // not recorded /// 0048630 // skeletal muscle tissue growth // inferred from expression pattern /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from electronic annotation /// 0048662 // negative regulation of smooth muscle cell proliferation // not recorded 0005576 // extracellular region // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005520 // insulin-like growth factor binding // inferred from direct assay /// 0005520 // insulin-like growth factor binding // not recorded /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation /// 0019838 // growth factor binding // inferred from electronic annotation /// 0031994 // insulin-like growth factor I binding // inferred from electronic annotation /// 0031994 // insulin-like growth factor I binding // not recorded 1397831_at AW527319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527319 /DB_XREF=gi:7169733 /DB_XREF=UI-R-BO1-ajs-h-11-0-UI.s1 /CLONE=UI-R-BO1-ajs-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.46497.1 /TIER=ConsEnd /STK=0 /UG=Rn.46497 /UG_TITLE=ESTs AW527319 1397832_at BF564964 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564964 /DB_XREF=gi:11674694 /DB_XREF=UI-R-BS0-amo-d-09-0-UI.r1 /CLONE=UI-R-BS0-amo-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.65572.1 /TIER=ConsEnd /STK=0 /UG=Rn.65572 /UG_TITLE=ESTs, Moderately similar to T42658 hypothetical protein DKFZp434K0115.1 (H.sapiens) BF564964 CDK5 regulatory subunit associated protein 2 Cdk5rap2 286919 NM_173134 /// XM_001059116 /// XM_575844 0000226 // microtubule cytoskeleton organization // inferred from sequence or structural similarity /// 0001578 // microtubule bundle formation // inferred from sequence or structural similarity /// 0007059 // chromosome segregation // inferred from sequence or structural similarity /// 0007420 // brain development // traceable author statement /// 0045664 // regulation of neuron differentiation // traceable author statement /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0051297 // centrosome organization // inferred from sequence or structural similarity /// 0090231 // regulation of spindle checkpoint // inferred from sequence or structural similarity 0000242 // pericentriolar material // inferred from sequence or structural similarity /// 0000922 // spindle pole // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0008017 // microtubule binding // not recorded /// 0010843 // promoter binding // inferred from sequence or structural similarity /// 0032403 // protein complex binding // inferred from direct assay /// 0042808 // neuronal Cdc2-like kinase binding // inferred from physical interaction /// 0042808 // neuronal Cdc2-like kinase binding // not recorded /// 0042808 // neuronal Cdc2-like kinase binding // inferred from sequence or structural similarity 1397833_at BF416010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416010 /DB_XREF=gi:11403999 /DB_XREF=UI-R-CA0-bkh-a-11-0-UI.s1 /CLONE=UI-R-CA0-bkh-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.62898.1 /TIER=ConsEnd /STK=0 /UG=Rn.62898 /UG_TITLE=ESTs BF416010 1397834_at BI294052 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294052 /DB_XREF=gi:14956140 /DB_XREF=UI-R-DK0-cdy-g-12-0-UI.s1 /CLONE=UI-R-DK0-cdy-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.79516.1 /TIER=ConsEnd /STK=0 /UG=Rn.79516 /UG_TITLE=ESTs BI294052 retinol dehydrogenase 13 (all-trans/9-cis) Rdh13 361504 NM_001108468 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation 1397835_at AI576663 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576663 /DB_XREF=gi:4561039 /DB_XREF=UI-R-Y0-ve-c-08-0-UI.s2 /CLONE=UI-R-Y0-ve-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.39390.1 /TIER=ConsEnd /STK=0 /UG=Rn.39390 /UG_TITLE=ESTs AI576663 1397836_at BF546537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546537 /DB_XREF=gi:11637644 /DB_XREF=UI-R-C1-ld-f-11-0-UI.r1 /CLONE=UI-R-C1-ld-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.41749.1 /TIER=ConsEnd /STK=0 /UG=Rn.41749 /UG_TITLE=ESTs BF546537 sirtuin (silent mating type information regulation 2 homolog) 4 (S. cerevisiae) Sirt4 304539 NM_001107147 0006342 // chromatin silencing // inferred from electronic annotation /// 0006476 // protein deacetylation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0046676 // negative regulation of insulin secretion // inferred from electronic annotation /// 0046676 // negative regulation of insulin secretion // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0005759 // mitochondrial matrix // not recorded 0003950 // NAD+ ADP-ribosyltransferase activity // inferred from electronic annotation /// 0003950 // NAD+ ADP-ribosyltransferase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016811 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides // inferred from electronic annotation /// 0034979 // NAD-dependent protein deacetylase activity // not recorded /// 0070403 // NAD binding // inferred from electronic annotation 1397837_at AW921600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921600 /DB_XREF=gi:8087424 /DB_XREF=EST352904 /CLONE=RGIIB53 /FEA=EST /CNT=2 /TID=Rn.79079.1 /TIER=ConsEnd /STK=0 /UG=Rn.79079 /UG_TITLE=ESTs AW921600 1397838_at BF522792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF522792 /DB_XREF=gi:11630759 /DB_XREF=UI-R-Y0-vj-d-04-0-UI.r1 /CLONE=UI-R-Y0-vj-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.61294.1 /TIER=ConsEnd /STK=0 /UG=Rn.61294 /UG_TITLE=ESTs BF522792 1397839_at BF554320 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF554320 /DB_XREF=gi:11664050 /DB_XREF=UI-R-C1-kh-a-02-0-UI.r1 /CLONE=UI-R-C1-kh-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.72693.1 /TIER=ConsEnd /STK=0 /UG=Rn.72693 /UG_TITLE=ESTs, Highly similar to RB15 RAT RAS-RELATED PROTEIN RAB-15 (R.norvegicus) BF554320 RAB15, member RAS oncogene family Rab15 299156 NM_198749 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation 1397840_at BF563826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563826 /DB_XREF=gi:11673556 /DB_XREF=UI-R-BT1-akt-f-10-0-UI.r1 /CLONE=UI-R-BT1-akt-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.76290.1 /TIER=ConsEnd /STK=0 /UG=Rn.76290 /UG_TITLE=ESTs BF563826 1397841_at BG379062 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379062 /DB_XREF=gi:13303534 /DB_XREF=UI-R-BT1-bnh-d-04-0-UI.s1 /CLONE=UI-R-BT1-bnh-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.52026.1 /TIER=ConsEnd /STK=0 /UG=Rn.52026 /UG_TITLE=ESTs BG379062 1397842_at AI712398 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712398 /DB_XREF=gi:5016198 /DB_XREF=UI-R-AF1-aaw-b-03-0-UI.s1 /CLONE=UI-R-AF1-aaw-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.40967.1 /TIER=ConsEnd /STK=0 /UG=Rn.40967 /UG_TITLE=ESTs AI712398 1397843_at BG663841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG663841 /DB_XREF=gi:13885763 /DB_XREF=DRAAAOC10 /CLONE=DRAAAOC10 /FEA=EST /CNT=2 /TID=Rn.51815.1 /TIER=ConsEnd /STK=0 /UG=Rn.51815 /UG_TITLE=ESTs, Weakly similar to T23875 hypothetical protein R03E1.1 - Caenorhabditis elegans (C.elegans) BG663841 WD repeat domain 44 Wdr44 246152 XM_001061437 /// XM_343761 0030334 // regulation of cell migration // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005874 // microtubule // inferred from direct assay /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0017137 // Rab GTPase binding // inferred from direct assay 1397844_at BF400963 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400963 /DB_XREF=gi:11388938 /DB_XREF=UI-R-CA0-bgi-a-02-0-UI.s1 /CLONE=UI-R-CA0-bgi-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.64140.1 /TIER=ConsEnd /STK=0 /UG=Rn.64140 /UG_TITLE=ESTs BF400963 1397845_at BE106909 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106909 /DB_XREF=gi:8499011 /DB_XREF=UI-R-BT1-asu-f-02-0-UI.s1 /CLONE=UI-R-BT1-asu-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.56987.1 /TIER=ConsEnd /STK=0 /UG=Rn.56987 /UG_TITLE=ESTs BE106909 1397846_at BE117101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117101 /DB_XREF=gi:8509206 /DB_XREF=UI-R-BJ1-awt-h-03-0-UI.s1 /CLONE=UI-R-BJ1-awt-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.72640.1 /TIER=ConsEnd /STK=0 /UG=Rn.72640 /UG_TITLE=ESTs BE117101 chibby homolog 1 (Drosophila) Cby1 246768 NM_145676 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030178 // negative regulation of Wnt receptor signaling pathway // not recorded /// 0030178 // negative regulation of Wnt receptor signaling pathway // inferred from electronic annotation /// 0042384 // cilium assembly // inferred from electronic annotation /// 0042384 // cilium assembly // not recorded /// 0045444 // fat cell differentiation // not recorded /// 0045444 // fat cell differentiation // inferred from sequence or structural similarity /// 0045444 // fat cell differentiation // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0055007 // cardiac muscle cell differentiation // not recorded /// 0055007 // cardiac muscle cell differentiation // inferred from sequence or structural similarity /// 0055007 // cardiac muscle cell differentiation // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005932 // microtubule basal body // inferred from electronic annotation /// 0005932 // microtubule basal body // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // inferred from electronic annotation /// 0008013 // beta-catenin binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1397847_at AW921990 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921990 /DB_XREF=gi:8087814 /DB_XREF=EST353294 /CLONE=RGIIK16 /FEA=EST /CNT=2 /TID=Rn.69697.1 /TIER=ConsEnd /STK=0 /UG=Rn.69697 /UG_TITLE=ESTs AW921990 1397848_at AI171553 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171553 /DB_XREF=gi:3711593 /DB_XREF=EST217518 /CLONE=RMUBM46 /FEA=EST /CNT=2 /TID=Rn.55271.1 /TIER=ConsEnd /STK=0 /UG=Rn.55271 /UG_TITLE=ESTs AI171553 similar to RIKEN cDNA 6330406I15 RGD1307396 360757 XM_001059692 /// XM_341029 1397849_at BF564083 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564083 /DB_XREF=gi:11673813 /DB_XREF=UI-R-C4-ald-c-03-0-UI.r1 /CLONE=UI-R-C4-ald-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.81437.1 /TIER=ConsEnd /STK=0 /UG=Rn.81437 /UG_TITLE=ESTs BF564083 1397850_at BE110348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110348 /DB_XREF=gi:8502453 /DB_XREF=UI-R-CA0-axl-h-12-0-UI.s1 /CLONE=UI-R-CA0-axl-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.51888.1 /TIER=ConsEnd /STK=0 /UG=Rn.51888 /UG_TITLE=ESTs BE110348 1397851_at BE102226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102226 /DB_XREF=gi:8494325 /DB_XREF=UI-R-BT1-aqk-a-01-0-UI.s1 /CLONE=UI-R-BT1-aqk-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.66731.1 /TIER=ConsEnd /STK=0 /UG=Rn.66731 /UG_TITLE=ESTs BE102226 1397852_at H32108 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H32108 /DB_XREF=gi:977525 /DB_XREF=EST106907 /CLONE=RPCBH67 /FEA=EST /CNT=2 /TID=Rn.62255.1 /TIER=ConsEnd /STK=0 /UG=Rn.62255 /UG_TITLE=ESTs H32108 transcriptional adaptor 1 (HFI1 homolog, yeast) like Tada1l 360874 NM_001037980 0006350 // transcription // inferred from electronic annotation /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0043966 // histone H3 acetylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0030914 // STAGA complex // inferred from electronic annotation /// 0030914 // STAGA complex // not recorded 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // not recorded 1397853_s_at BG672534 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672534 /DB_XREF=gi:13894633 /DB_XREF=DRNCLB01 /CLONE=DRNCLB01 /FEA=EST /CNT=2 /TID=Rn.74157.1 /TIER=ConsEnd /STK=0 /UG=Rn.74157 /UG_TITLE=ESTs, Weakly similar to T46356 hypothetical protein DKFZp434G2016.1 (H.sapiens) BG672534 Cdc42 guanine nucleotide exchange factor (GEF) 9 Arhgef9 66013 NM_023957 0001941 // postsynaptic membrane organization // inferred from mutant phenotype /// 0006915 // apoptosis // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction 1397854_at BI275309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275309 /DB_XREF=gi:14887035 /DB_XREF=UI-R-CX0-bwu-a-03-0-UI.s1 /CLONE=UI-R-CX0-bwu-a-03-0-UI /FEA=EST /CNT=2 /TID=Rn.26645.1 /TIER=ConsEnd /STK=0 /UG=Rn.26645 /UG_TITLE=ESTs BI275309 D4, zinc and double PHD fingers, family 3 Dpf3 299186 NM_001191818 /// XM_001055009 /// XM_238462 0007399 // nervous system development // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0071565 // nBAF complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397855_at BE096287 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096287 /DB_XREF=gi:8487218 /DB_XREF=UI-R-BU0-ape-c-07-0-UI.s1 /CLONE=UI-R-BU0-ape-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.31289.1 /TIER=ConsEnd /STK=0 /UG=Rn.31289 /UG_TITLE=ESTs BE096287 1397856_at H31756 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H31756 /DB_XREF=gi:977173 /DB_XREF=EST106116 /FEA=EST /CNT=2 /TID=Rn.73993.1 /TIER=ConsEnd /STK=0 /UG=Rn.73993 /UG_TITLE=ESTs, Moderately similar to GATB_HUMAN PROBABLE GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B, MITOCHONDRIAL PRECURSOR (H.sapiens) H31756 PET112-like (yeast) Pet112l 361974 XM_001066526 0006412 // translation // inferred from electronic annotation 0016874 // ligase activity // inferred from electronic annotation /// 0016884 // carbon-nitrogen ligase activity, with glutamine as amido-N-donor // inferred from electronic annotation 1397857_at AI547502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI547502 /DB_XREF=gi:4464990 /DB_XREF=UI-R-C3-sl-g-02-0-UI.s1 /CLONE=UI-R-C3-sl-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.33993.1 /TIER=ConsEnd /STK=0 /UG=Rn.33993 /UG_TITLE=ESTs AI547502 1397858_at AI548704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548704 /DB_XREF=gi:4466192 /DB_XREF=UI-R-C3-tw-c-04-0-UI.s1 /CLONE=UI-R-C3-tw-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.40352.1 /TIER=ConsEnd /STK=0 /UG=Rn.40352 /UG_TITLE=ESTs AI548704 1397859_x_at BI291927 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291927 /DB_XREF=gi:14951927 /DB_XREF=UI-R-DN0-ciu-o-09-0-UI.s1 /CLONE=UI-R-DN0-ciu-o-09-0-UI /FEA=EST /CNT=2 /TID=Rn.79279.1 /TIER=ConsEnd /STK=0 /UG=Rn.79279 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BI291927 1397860_at AI406299 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406299 /DB_XREF=gi:4249803 /DB_XREF=EST234585 /CLONE=RBRDM13 /FEA=EST /CNT=2 /TID=Rn.42987.1 /TIER=ConsEnd /STK=0 /UG=Rn.42987 /UG_TITLE=ESTs AI406299 1397861_at BF405195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405195 /DB_XREF=gi:11393170 /DB_XREF=UI-R-CA1-biq-h-12-0-UI.s1 /CLONE=UI-R-CA1-biq-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.65503.1 /TIER=ConsEnd /STK=0 /UG=Rn.65503 /UG_TITLE=ESTs BF405195 V-set and transmembrane domain containing 2B Vstm2b 361560 NM_001108479 0016021 // integral to membrane // inferred from electronic annotation 1397862_at BF414858 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414858 /DB_XREF=gi:11402847 /DB_XREF=UI-R-BJ2-bos-h-04-0-UI.s1 /CLONE=UI-R-BJ2-bos-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.64122.1 /TIER=ConsEnd /STK=0 /UG=Rn.64122 /UG_TITLE=ESTs BF414858 1397863_at BI288592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288592 /DB_XREF=gi:14945330 /DB_XREF=UI-R-DK0-cdg-f-08-0-UI.s1 /CLONE=UI-R-DK0-cdg-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.34551.1 /TIER=ConsEnd /STK=0 /UG=Rn.34551 /UG_TITLE=ESTs BI288592 1397864_at BF412601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412601 /DB_XREF=gi:11400590 /DB_XREF=UI-R-BT1-bnp-f-11-0-UI.s1 /CLONE=UI-R-BT1-bnp-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.27663.1 /TIER=ConsEnd /STK=0 /UG=Rn.27663 /UG_TITLE=ESTs BF412601 1397865_at AI138056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI138056 /DB_XREF=gi:3638833 /DB_XREF=UI-R-C2p-oi-h-03-0-UI.s1 /CLONE=UI-R-C2p-oi-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.27571.1 /TIER=ConsEnd /STK=0 /UG=Rn.27571 /UG_TITLE=ESTs AI138056 1397866_at BG380122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380122 /DB_XREF=gi:13304594 /DB_XREF=UI-R-CS0-btp-c-09-0-UI.s1 /CLONE=UI-R-CS0-btp-c-09-0-UI /FEA=EST /CNT=2 /TID=Rn.32478.1 /TIER=ConsEnd /STK=0 /UG=Rn.32478 /UG_TITLE=ESTs, Weakly similar to PLASMINOGEN ACTIVATOR INHIBITOR-2, TYPE A (R.norvegicus) BG380122 serine (or cysteine) peptidase inhibitor, clade B, member 6b Serpinb6b 364705 NM_001012214 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation 1397867_at BG379733 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379733 /DB_XREF=gi:13304205 /DB_XREF=UI-R-CS0-btj-e-10-0-UI.s1 /CLONE=UI-R-CS0-btj-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.39260.1 /TIER=ConsEnd /STK=0 /UG=Rn.39260 /UG_TITLE=ESTs BG379733 A kinase (PRKA) anchor protein 6 Akap6 64553 NM_022618 0010738 // regulation of protein kinase A signaling cascade // inferred from mutant phenotype /// 0032514 // positive regulation of protein phosphatase type 2B activity // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay /// 0005635 // nuclear envelope // not recorded /// 0005640 // nuclear outer membrane // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // not recorded /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from direct assay /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0034704 // calcium channel complex // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0019899 // enzyme binding // inferred from physical interaction /// 0032947 // protein complex scaffold // inferred from direct assay /// 0032947 // protein complex scaffold // inferred from mutant phenotype /// 0034237 // protein kinase A regulatory subunit binding // inferred from direct assay /// 0034237 // protein kinase A regulatory subunit binding // inferred from mutant phenotype /// 0047485 // protein N-terminus binding // inferred from physical interaction /// 0051018 // protein kinase A binding // inferred from direct assay 1397868_at BF395461 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395461 /DB_XREF=gi:11380427 /DB_XREF=UI-R-CM0-bjn-a-01-0-UI.s1 /CLONE=UI-R-CM0-bjn-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.41689.1 /TIER=ConsEnd /STK=0 /UG=Rn.41689 /UG_TITLE=ESTs, Highly similar to VGR2_RAT VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2 PRECURSOR (VEGFR-2) (PROTEIN-TYROSINE KINASE RECEPTOR FLK-1) (FETAL LIVER KINASE 1) (R.norvegicus) BF395461 1397869_at AI453907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI453907 /DB_XREF=gi:4290008 /DB_XREF=UI-R-BT0-pu-e-01-0-UI.s1 /CLONE=UI-R-BT0-pu-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.45921.1 /TIER=ConsEnd /STK=0 /UG=Rn.45921 /UG_TITLE=ESTs AI453907 1397870_at BF390925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390925 /DB_XREF=gi:11375772 /DB_XREF=UI-R-CA1-bce-b-08-0-UI.s1 /CLONE=UI-R-CA1-bce-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.62389.1 /TIER=ConsEnd /STK=0 /UG=Rn.62389 /UG_TITLE=ESTs BF390925 1397871_at AI144643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI144643 /DB_XREF=gi:3666442 /DB_XREF=UI-R-BT0-pl-d-08-0-UI.s1 /CLONE=UI-R-BT0-pl-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.27629.1 /TIER=ConsEnd /STK=0 /UG=Rn.27629 /UG_TITLE=ESTs AI144643 1397872_at AI577099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI577099 /DB_XREF=gi:4561475 /DB_XREF=UI-R-AD0-wb-c-10-0-UI.s1 /CLONE=UI-R-AD0-wb-c-10-0-UI /FEA=EST /CNT=2 /TID=Rn.34295.1 /TIER=ConsEnd /STK=0 /UG=Rn.34295 /UG_TITLE=ESTs AI577099 1397873_at AI502924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502924 /DB_XREF=gi:4400775 /DB_XREF=UI-R-C1-kq-b-11-0-UI.s1 /CLONE=UI-R-C1-kq-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.35636.1 /TIER=ConsEnd /STK=0 /UG=Rn.35636 /UG_TITLE=ESTs AI502924 1397874_at AI548493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548493 /DB_XREF=gi:4465981 /DB_XREF=UI-R-C3-to-a-07-0-UI.s1 /CLONE=UI-R-C3-to-a-07-0-UI /FEA=EST /CNT=2 /TID=Rn.40966.1 /TIER=ConsEnd /STK=0 /UG=Rn.40966 /UG_TITLE=ESTs AI548493 LSM11, U7 small nuclear RNA associated Lsm11 501688 NM_001173384 /// XM_001068848 /// XM_577085 0000084 // S phase of mitotic cell cycle // inferred from electronic annotation /// 0000084 // S phase of mitotic cell cycle // not recorded /// 0006398 // histone mRNA 3'-end processing // inferred from electronic annotation /// 0006398 // histone mRNA 3'-end processing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005683 // U7 snRNP // inferred from electronic annotation /// 0005683 // U7 snRNP // not recorded /// 0071204 // histone pre-mRNA 3'end processing complex // inferred from electronic annotation /// 0071204 // histone pre-mRNA 3'end processing complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0071209 // U7 snRNA binding // inferred from electronic annotation /// 0071209 // U7 snRNA binding // not recorded 1397875_at AI136903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136903 /DB_XREF=gi:3637680 /DB_XREF=UI-R-C2p-of-h-07-0-UI.s1 /CLONE=UI-R-C2p-of-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.42619.1 /TIER=ConsEnd /STK=0 /UG=Rn.42619 /UG_TITLE=ESTs AI136903 1397876_at AI549089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549089 /DB_XREF=gi:4466577 /DB_XREF=UI-R-C3-tq-d-09-0-UI.s1 /CLONE=UI-R-C3-tq-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.47639.1 /TIER=ConsEnd /STK=0 /UG=Rn.47639 /UG_TITLE=ESTs AI549089 1397877_at AI237209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237209 /DB_XREF=gi:3830715 /DB_XREF=EST233771 /CLONE=ROVDP92 /FEA=EST /CNT=2 /TID=Rn.61013.1 /TIER=ConsEnd /STK=0 /UG=Rn.61013 /UG_TITLE=ESTs AI237209 RPTOR independent companion of MTOR, complex 2 Rictor 310131 XM_001055633 /// XM_226812 0001938 // positive regulation of endothelial cell proliferation // inferred from mutant phenotype /// 0009790 // embryo development // not recorded /// 0030838 // positive regulation of actin filament polymerization // not recorded /// 0031532 // actin cytoskeleton reorganization // not recorded /// 0032008 // positive regulation of TOR signaling cascade // not recorded /// 0032314 // regulation of Rac GTPase activity // not recorded /// 0032956 // regulation of actin cytoskeleton organization // not recorded /// 0042325 // regulation of phosphorylation // inferred from mutant phenotype /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0051896 // regulation of protein kinase B signaling cascade // not recorded /// 0051897 // positive regulation of protein kinase B signaling cascade // inferred from mutant phenotype 0005829 // cytosol // not recorded /// 0031932 // TORC2 complex // inferred from mutant phenotype /// 0031932 // TORC2 complex // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1397878_at BG671050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671050 /DB_XREF=gi:13893149 /DB_XREF=DRNBKH12 /CLONE=DRNBKH12 /FEA=EST /CNT=2 /TID=Rn.70053.1 /TIER=ConsEnd /STK=0 /UG=Rn.70053 /UG_TITLE=ESTs, Weakly similar to QORL_HUMAN QUINONE OXIDOREDUCTASE-LIKE 1 (H.sapiens) BG671050 1397879_at BF388414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388414 /DB_XREF=gi:11373238 /DB_XREF=UI-R-BS2-bdc-b-12-0-UI.s1 /CLONE=UI-R-BS2-bdc-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.29109.1 /TIER=ConsEnd /STK=0 /UG=Rn.29109 /UG_TITLE=ESTs BF388414 1397880_at BF389592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389592 /DB_XREF=gi:11374427 /DB_XREF=UI-R-CJ0-bfd-e-06-0-UI.s1 /CLONE=UI-R-CJ0-bfd-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.52531.1 /TIER=ConsEnd /STK=0 /UG=Rn.52531 /UG_TITLE=ESTs BF389592 lysophosphatidylglycerol acyltransferase 1 Lpgat1 679692 NM_001109376 0008152 // metabolic process // inferred from electronic annotation 0005737 // cytoplasm // not recorded 0008415 // acyltransferase activity // inferred from electronic annotation 1397881_at AI575768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575768 /DB_XREF=gi:4560144 /DB_XREF=UI-R-G0-ue-e-06-0-UI.s1 /CLONE=UI-R-G0-ue-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.28051.1 /TIER=ConsEnd /STK=0 /UG=Rn.28051 /UG_TITLE=ESTs AI575768 1397882_at BF559709 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559709 /DB_XREF=gi:11669439 /DB_XREF=UI-R-E1-gn-e-02-0-UI.r1 /CLONE=UI-R-E1-gn-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.82564.1 /TIER=ConsEnd /STK=0 /UG=Rn.82564 /UG_TITLE=ESTs BF559709 zinc finger and BTB domain containing 8a Zbtb8a 313049 NM_001107913 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397883_at H33845 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H33845 /DB_XREF=gi:979262 /DB_XREF=EST110238 /FEA=EST /CNT=2 /TID=Rn.82531.1 /TIER=ConsEnd /STK=0 /UG=Rn.82531 /UG_TITLE=ESTs H33845 1397884_at AA858727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA858727 /DB_XREF=gi:4228920 /DB_XREF=UI-R-A0-be-c-03-0-UI.s1 /CLONE=UI-R-A0-be-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.59575.1 /TIER=ConsEnd /STK=0 /UG=Rn.59575 /UG_TITLE=ESTs, Highly similar to KIAA0746 protein (H.sapiens) AA858727 sel-1 suppressor of lin-12-like 3 (C. elegans) Sel1l3 360945 XM_001055920 /// XM_341223 0005488 // binding // inferred from electronic annotation 1397885_at BF552583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552583 /DB_XREF=gi:11662313 /DB_XREF=UI-R-C1-kt-b-03-0-UI.r1 /CLONE=UI-R-C1-kt-b-03-0-UI /FEA=EST /CNT=2 /TID=Rn.72662.1 /TIER=ConsEnd /STK=0 /UG=Rn.72662 /UG_TITLE=ESTs BF552583 1397886_at BF564624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564624 /DB_XREF=gi:11674354 /DB_XREF=UI-R-BT1-amh-e-01-0-UI.r1 /CLONE=UI-R-BT1-amh-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.64171.1 /TIER=ConsEnd /STK=0 /UG=Rn.64171 /UG_TITLE=ESTs BF564624 zinc finger CCCH type containing 8 Zc3h8 311414 NM_001012090 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0033085 // negative regulation of T cell differentiation in thymus // inferred from electronic annotation /// 0033085 // negative regulation of T cell differentiation in thymus // not recorded /// 0043029 // T cell homeostasis // inferred from electronic annotation /// 0043029 // T cell homeostasis // not recorded /// 0046677 // response to antibiotic // inferred from electronic annotation /// 0046677 // response to antibiotic // not recorded /// 0070245 // positive regulation of thymocyte apoptosis // inferred from electronic annotation /// 0070245 // positive regulation of thymocyte apoptosis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1397887_at BI298616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298616 /DB_XREF=gi:14974896 /DB_XREF=UI-R-CV2-chl-f-08-0-UI.s1 /CLONE=UI-R-CV2-chl-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.76768.1 /TIER=ConsEnd /STK=0 /UG=Rn.76768 /UG_TITLE=ESTs BI298616 1397888_at BM389787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389787 /DB_XREF=gi:18189840 /DB_XREF=UI-R-CN1-cjp-d-17-0-UI.s1 /CLONE=UI-R-CN1-cjp-d-17-0-UI /FEA=EST /CNT=2 /TID=Rn.47637.1 /TIER=ConsEnd /STK=0 /UG=Rn.47637 /UG_TITLE=ESTs BM389787 1397889_at BF402043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402043 /DB_XREF=gi:11390018 /DB_XREF=UI-R-CA1-bim-c-01-0-UI.s1 /CLONE=UI-R-CA1-bim-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.26698.1 /TIER=ConsEnd /STK=0 /UG=Rn.26698 /UG_TITLE=ESTs BF402043 1397890_at BE108121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108121 /DB_XREF=gi:8500226 /DB_XREF=UI-R-CA0-axa-f-06-0-UI.s1 /CLONE=UI-R-CA0-axa-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.51420.1 /TIER=ConsEnd /STK=0 /UG=Rn.51420 /UG_TITLE=ESTs BE108121 similar to hypothetical protein RGD1564053 500390 NM_001109259 0007165 // signal transduction // inferred from electronic annotation 0008603 // cAMP-dependent protein kinase regulator activity // inferred from electronic annotation 1397891_at BM387048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387048 /DB_XREF=gi:18187101 /DB_XREF=UI-R-CN1-cji-c-18-0-UI.s1 /CLONE=UI-R-CN1-cji-c-18-0-UI /FEA=EST /CNT=2 /TID=Rn.79793.1 /TIER=ConsEnd /STK=0 /UG=Rn.79793 /UG_TITLE=ESTs BM387048 1397892_at BI301150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301150 /DB_XREF=gi:14977430 /DB_XREF=UI-R-DN0-cit-l-17-0-UI.s1 /CLONE=UI-R-DN0-cit-l-17-0-UI /FEA=EST /CNT=2 /TID=Rn.32065.1 /TIER=ConsEnd /STK=0 /UG=Rn.32065 /UG_TITLE=ESTs BI301150 eukaryotic translation initiation factor 1A Eif1a 317163 NM_001008773 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation 1397893_at BI292474 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292474 /DB_XREF=gi:14953005 /DB_XREF=UI-R-DO0-ciw-a-11-0-UI.s1 /CLONE=UI-R-DO0-ciw-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.40767.1 /TIER=ConsEnd /STK=0 /UG=Rn.40767 /UG_TITLE=ESTs BI292474 1397894_at BG381542 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381542 /DB_XREF=gi:13306014 /DB_XREF=UI-R-CT0-buk-e-05-0-UI.s1 /CLONE=UI-R-CT0-buk-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.45134.1 /TIER=ConsEnd /STK=0 /UG=Rn.45134 /UG_TITLE=ESTs BG381542 1397895_at BI290793 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290793 /DB_XREF=gi:14949704 /DB_XREF=UI-R-DK0-cga-d-11-0-UI.s1 /CLONE=UI-R-DK0-cga-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.48366.1 /TIER=ConsEnd /STK=0 /UG=Rn.48366 /UG_TITLE=ESTs BI290793 1397896_at BI296960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296960 /DB_XREF=gi:14961898 /DB_XREF=UI-R-DK0-cgj-e-12-0-UI.s1 /CLONE=UI-R-DK0-cgj-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.51580.1 /TIER=ConsEnd /STK=0 /UG=Rn.51580 /UG_TITLE=ESTs BI296960 similar to hypothetical protein FLJ23074 RGD1566400 289001 XM_002724862 /// XM_002727999 0006468 // protein phosphorylation // inferred from electronic annotation 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1397897_x_at BI273954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI273954 /DB_XREF=gi:14884418 /DB_XREF=UI-R-CW0-bwa-h-09-0-UI.s1 /CLONE=UI-R-CW0-bwa-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.54282.1 /TIER=ConsEnd /STK=0 /UG=Rn.54282 /UG_TITLE=ESTs BI273954 1397898_at BI293701 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293701 /DB_XREF=gi:14955449 /DB_XREF=UI-R-DK0-cdu-f-09-0-UI.s1 /CLONE=UI-R-DK0-cdu-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.57272.1 /TIER=ConsEnd /STK=0 /UG=Rn.57272 /UG_TITLE=ESTs BI293701 0005634 // nucleus // inferred from electronic annotation 0070694 // deoxyribonucleoside 5'-monophosphate N-glycosidase activity // inferred from electronic annotation 1397899_at BF409130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409130 /DB_XREF=gi:11397105 /DB_XREF=UI-R-BT1-bkm-d-03-0-UI.s1 /CLONE=UI-R-BT1-bkm-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.61260.1 /TIER=ConsEnd /STK=0 /UG=Rn.61260 /UG_TITLE=ESTs BF409130 1397900_at BG375046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375046 /DB_XREF=gi:13299518 /DB_XREF=UI-R-CV1-bst-e-03-0-UI.s1 /CLONE=UI-R-CV1-bst-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.66277.1 /TIER=ConsEnd /STK=0 /UG=Rn.66277 /UG_TITLE=ESTs BG375046 1397901_at BI298378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298378 /DB_XREF=gi:14974658 /DB_XREF=UI-R-CV2-cho-f-02-0-UI.s1 /CLONE=UI-R-CV2-cho-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.66295.1 /TIER=ConsEnd /STK=0 /UG=Rn.66295 /UG_TITLE=ESTs BI298378 1397902_at BF548780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF548780 /DB_XREF=gi:11639887 /DB_XREF=UI-R-A0-ar-f-08-0-UI.r1 /CLONE=UI-R-A0-ar-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.72643.1 /TIER=ConsEnd /STK=0 /UG=Rn.72643 /UG_TITLE=ESTs BF548780 COX15 homolog, cytochrome c oxidase assembly protein (yeast) Cox15 309391 NM_001033699 0006461 // protein complex assembly // inferred from electronic annotation /// 0006784 // heme a biosynthetic process // inferred from electronic annotation /// 0006784 // heme a biosynthetic process // not recorded /// 0008535 // respiratory chain complex IV assembly // not recorded 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0044429 // mitochondrial part // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004129 // cytochrome-c oxidase activity // not recorded 1397903_at BI280014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280014 /DB_XREF=gi:14928392 /DB_XREF=UI-R-DD0-cbb-b-12-0-UI.s1 /CLONE=UI-R-DD0-cbb-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.78002.1 /TIER=ConsEnd /STK=0 /UG=Rn.78002 /UG_TITLE=ESTs BI280014 1397904_at BI292042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292042 /DB_XREF=gi:14952158 /DB_XREF=UI-R-DN0-ciu-g-14-0-UI.s1 /CLONE=UI-R-DN0-ciu-g-14-0-UI /FEA=EST /CNT=2 /TID=Rn.79289.1 /TIER=ConsEnd /STK=0 /UG=Rn.79289 /UG_TITLE=ESTs BI292042 1397905_at BI273836 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI273836 /DB_XREF=gi:14884178 /DB_XREF=UI-R-CW0-bvz-e-07-0-UI.s1 /CLONE=UI-R-CW0-bvz-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.79933.1 /TIER=ConsEnd /STK=0 /UG=Rn.79933 /UG_TITLE=ESTs BI273836 1397906_at AW251988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW251988 /DB_XREF=gi:6595579 /DB_XREF=UI-R-BJ0-adc-e-07-0-UI.s1 /CLONE=UI-R-BJ0-adc-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.41079.1 /TIER=ConsEnd /STK=0 /UG=Rn.41079 /UG_TITLE=ESTs AW251988 0007155 // cell adhesion // inferred from direct assay /// 0031175 // neuron projection development // inferred from mutant phenotype 0016020 // membrane // inferred from electronic annotation 0004725 // protein tyrosine phosphatase activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation 1397907_at BF553760 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF553760 /DB_XREF=gi:11663490 /DB_XREF=UI-R-C2p-oa-d-05-0-UI.r1 /CLONE=UI-R-C2p-oa-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.76219.1 /TIER=ConsEnd /STK=0 /UG=Rn.76219 /UG_TITLE=ESTs BF553760 Hypothetical protein LOC501546 LOC501546 501546 XR_005443 /// XR_009642 0000209 // protein polyubiquitination // inferred from sequence or structural similarity /// 0006464 // protein modification process // inferred from electronic annotation /// 0016574 // histone ubiquitination // inferred from sequence or structural similarity /// 0030154 // cell differentiation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0005488 // binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation 1397908_at AW915255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915255 /DB_XREF=gi:8080944 /DB_XREF=EST346559 /CLONE=RGICS22 /FEA=EST /CNT=2 /TID=Rn.49240.1 /TIER=ConsEnd /STK=0 /UG=Rn.49240 /UG_TITLE=ESTs AW915255 1397909_at BF392761 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392761 /DB_XREF=gi:11377618 /DB_XREF=UI-R-CA0-bfm-h-10-0-UI.s1 /CLONE=UI-R-CA0-bfm-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.57903.1 /TIER=ConsEnd /STK=0 /UG=Rn.57903 /UG_TITLE=ESTs BF392761 1397910_at BF411180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411180 /DB_XREF=gi:11399155 /DB_XREF=UI-R-CN0-bmh-b-01-0-UI.s1 /CLONE=UI-R-CN0-bmh-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.61816.1 /TIER=ConsEnd /STK=0 /UG=Rn.61816 /UG_TITLE=ESTs BF411180 1397911_at BE115009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115009 /DB_XREF=gi:8507114 /DB_XREF=UI-R-BJ1-awu-b-11-0-UI.s1 /CLONE=UI-R-BJ1-awu-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.50847.1 /TIER=ConsEnd /STK=0 /UG=Rn.50847 /UG_TITLE=ESTs BE115009 1397912_at BF405936 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405936 /DB_XREF=gi:11393911 /DB_XREF=UI-R-CA1-bii-g-05-0-UI.s1 /CLONE=UI-R-CA1-bii-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.28809.1 /TIER=ConsEnd /STK=0 /UG=Rn.28809 /UG_TITLE=ESTs BF405936 1397913_at AW526277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526277 /DB_XREF=gi:7168662 /DB_XREF=UI-R-BO1-aja-b-11-0-UI.s1 /CLONE=UI-R-BO1-aja-b-11-0-UI /FEA=EST /CNT=2 /TID=Rn.46147.1 /TIER=ConsEnd /STK=0 /UG=Rn.46147 /UG_TITLE=ESTs AW526277 1397914_at BE108111 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108111 /DB_XREF=gi:8500216 /DB_XREF=UI-R-CA0-axa-e-07-0-UI.s1 /CLONE=UI-R-CA0-axa-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.48836.1 /TIER=ConsEnd /STK=0 /UG=Rn.48836 /UG_TITLE=ESTs BE108111 1397915_at AW526790 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526790 /DB_XREF=gi:7169204 /DB_XREF=UI-R-BO1-aje-a-11-0-UI.s1 /CLONE=UI-R-BO1-aje-a-11-0-UI /FEA=EST /CNT=2 /TID=Rn.46323.1 /TIER=ConsEnd /STK=0 /UG=Rn.46323 /UG_TITLE=ESTs AW526790 1397916_s_at AA924431 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924431 /DB_XREF=gi:4234570 /DB_XREF=UI-R-A1-dy-c-02-0-UI.s1 /CLONE=UI-R-A1-dy-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.37646.1 /TIER=ConsEnd /STK=0 /UG=Rn.37646 /UG_TITLE=ESTs AA924431 protein tyrosine phosphatase, non-receptor type 1 Ptpn1 24697 NM_012637 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // inferred from mutant phenotype /// 0006470 // protein dephosphorylation // not recorded /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0008286 // insulin receptor signaling pathway // not recorded /// 0008286 // insulin receptor signaling pathway // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0046626 // regulation of insulin receptor signaling pathway // inferred from mutant phenotype 0005626 // insoluble fraction // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // non-traceable author statement /// 0031410 // cytoplasmic vesicle // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from mutant phenotype /// 0004725 // protein tyrosine phosphatase activity // not recorded /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005158 // insulin receptor binding // inferred from direct assay /// 0005158 // insulin receptor binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation 1397917_at BF412498 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412498 /DB_XREF=gi:11400487 /DB_XREF=UI-R-BT1-bno-c-06-0-UI.s1 /CLONE=UI-R-BT1-bno-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.64231.1 /TIER=ConsEnd /STK=0 /UG=Rn.64231 /UG_TITLE=ESTs BF412498 1397918_at BF411420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411420 /DB_XREF=gi:11399402 /DB_XREF=UI-R-CN0-bmk-b-08-0-UI.s1 /CLONE=UI-R-CN0-bmk-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.48434.1 /TIER=ConsEnd /STK=0 /UG=Rn.48434 /UG_TITLE=ESTs BF411420 1397919_at BE121191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121191 /DB_XREF=gi:8513296 /DB_XREF=UI-R-CA0-bas-b-02-0-UI.s1 /CLONE=UI-R-CA0-bas-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.50299.1 /TIER=ConsEnd /STK=0 /UG=Rn.50299 /UG_TITLE=ESTs BE121191 coiled-coil domain containing 37 Ccdc37 297444 XM_001076288 /// XM_216219 1397920_at BM386261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386261 /DB_XREF=gi:18186314 /DB_XREF=UI-R-CN1-cjf-m-20-0-UI.s1 /CLONE=UI-R-CN1-cjf-m-20-0-UI /FEA=EST /CNT=2 /TID=Rn.63742.1 /TIER=ConsEnd /STK=0 /UG=Rn.63742 /UG_TITLE=ESTs BM386261 1397921_at AW535104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535104 /DB_XREF=gi:7177518 /DB_XREF=UI-R-C4-als-c-06-0-UI.s1 /CLONE=UI-R-C4-als-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.48425.1 /TIER=ConsEnd /STK=0 /UG=Rn.48425 /UG_TITLE=ESTs AW535104 1397922_at BF393925 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393925 /DB_XREF=gi:11378789 /DB_XREF=UI-R-CA0-bgw-f-10-0-UI.s1 /CLONE=UI-R-CA0-bgw-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.58169.1 /TIER=ConsEnd /STK=0 /UG=Rn.58169 /UG_TITLE=ESTs BF393925 1397923_at BF390621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390621 /DB_XREF=gi:11375468 /DB_XREF=UI-R-CA1-bck-c-08-0-UI.s1 /CLONE=UI-R-CA1-bck-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.62271.1 /TIER=ConsEnd /STK=0 /UG=Rn.62271 /UG_TITLE=ESTs BF390621 1397924_at AW523490 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW523490 /DB_XREF=gi:7165875 /DB_XREF=UI-R-BO0-aho-g-05-0-UI.s1 /CLONE=UI-R-BO0-aho-g-05-0-UI /FEA=EST /CNT=2 /TID=Rn.45655.1 /TIER=ConsEnd /STK=0 /UG=Rn.45655 /UG_TITLE=ESTs AW523490 1397925_at BF412309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412309 /DB_XREF=gi:11400298 /DB_XREF=UI-R-BT1-bnc-a-10-0-UI.s1 /CLONE=UI-R-BT1-bnc-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.46488.1 /TIER=ConsEnd /STK=0 /UG=Rn.46488 /UG_TITLE=ESTs BF412309 1397926_at BE110684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110684 /DB_XREF=gi:8502789 /DB_XREF=UI-R-BJ1-avu-h-01-0-UI.s1 /CLONE=UI-R-BJ1-avu-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.51916.1 /TIER=ConsEnd /STK=0 /UG=Rn.51916 /UG_TITLE=ESTs BE110684 1397927_at BE112811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112811 /DB_XREF=gi:8504916 /DB_XREF=UI-R-CA0-axd-a-10-0-UI.s1 /CLONE=UI-R-CA0-axd-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.52105.1 /TIER=ConsEnd /STK=0 /UG=Rn.52105 /UG_TITLE=ESTs BE112811 1397928_at BF389357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389357 /DB_XREF=gi:11374187 /DB_XREF=UI-R-BS2-bdm-h-04-0-UI.s1 /CLONE=UI-R-BS2-bdm-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.52683.1 /TIER=ConsEnd /STK=0 /UG=Rn.52683 /UG_TITLE=ESTs BF389357 1397929_at AW433692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433692 /DB_XREF=gi:6964999 /DB_XREF=UI-R-BJ0p-afp-h-01-0-UI.s1 /CLONE=UI-R-BJ0p-afp-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.54262.1 /TIER=ConsEnd /STK=0 /UG=Rn.54262 /UG_TITLE=ESTs AW433692 1397930_at BE104754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104754 /DB_XREF=gi:8496854 /DB_XREF=UI-R-BX0-art-b-08-0-UI.s1 /CLONE=UI-R-BX0-art-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.56259.1 /TIER=ConsEnd /STK=0 /UG=Rn.56259 /UG_TITLE=ESTs BE104754 1397931_at BF391158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391158 /DB_XREF=gi:11376005 /DB_XREF=UI-R-CA1-bcd-h-10-0-UI.s1 /CLONE=UI-R-CA1-bcd-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.57411.1 /TIER=ConsEnd /STK=0 /UG=Rn.57411 /UG_TITLE=ESTs BF391158 1397932_at BF395784 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395784 /DB_XREF=gi:11380755 /DB_XREF=UI-R-BT1-bkc-c-06-0-UI.s1 /CLONE=UI-R-BT1-bkc-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.58444.1 /TIER=ConsEnd /STK=0 /UG=Rn.58444 /UG_TITLE=ESTs, Highly similar to TAST_HUMAN TROPHININ-ASSOCIATED PROTEIN (H.sapiens) BF395784 1397933_at BF390265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390265 /DB_XREF=gi:11375111 /DB_XREF=UI-R-CA1-bcm-g-07-0-UI.s1 /CLONE=UI-R-CA1-bcm-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.58815.1 /TIER=ConsEnd /STK=0 /UG=Rn.58815 /UG_TITLE=ESTs BF390265 1397934_at BF399994 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399994 /DB_XREF=gi:11385045 /DB_XREF=UI-R-CA1-bia-h-04-0-UI.s1 /CLONE=UI-R-CA1-bia-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.59520.1 /TIER=ConsEnd /STK=0 /UG=Rn.59520 /UG_TITLE=ESTs BF399994 1397935_at BF403843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403843 /DB_XREF=gi:11391818 /DB_XREF=UI-R-CA1-bix-j-07-0-UI.s1 /CLONE=UI-R-CA1-bix-j-07-0-UI /FEA=EST /CNT=2 /TID=Rn.60200.1 /TIER=ConsEnd /STK=0 /UG=Rn.60200 /UG_TITLE=ESTs BF403843 1397936_at BF415706 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415706 /DB_XREF=gi:11403695 /DB_XREF=UI-R-CA1-bkd-g-02-0-UI.s1 /CLONE=UI-R-CA1-bkd-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.61273.1 /TIER=ConsEnd /STK=0 /UG=Rn.61273 /UG_TITLE=ESTs, Weakly similar to whn protein (R.norvegicus) BF415706 forkhead box R1 Foxr1 315601 XM_001067190 /// XM_243815 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1397937_at BF409772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409772 /DB_XREF=gi:11397747 /DB_XREF=UI-R-CA1-bls-f-03-0-UI.s1 /CLONE=UI-R-CA1-bls-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.61480.1 /TIER=ConsEnd /STK=0 /UG=Rn.61480 /UG_TITLE=ESTs BF409772 1397938_at BF419712 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419712 /DB_XREF=gi:11407701 /DB_XREF=UI-R-CA0-bpf-d-05-0-UI.s1 /CLONE=UI-R-CA0-bpf-d-05-0-UI /FEA=EST /CNT=2 /TID=Rn.61662.1 /TIER=ConsEnd /STK=0 /UG=Rn.61662 /UG_TITLE=ESTs BF419712 1397939_at BF416814 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416814 /DB_XREF=gi:11404803 /DB_XREF=UI-R-CA0-bkv-d-01-0-UI.s1 /CLONE=UI-R-CA0-bkv-d-01-0-UI /FEA=EST /CNT=2 /TID=Rn.62090.1 /TIER=ConsEnd /STK=0 /UG=Rn.62090 /UG_TITLE=ESTs, Highly similar to 3-KETOACYL-COA THIOLASE PEROXISOMAL B PRECURSOR (R.norvegicus) BF416814 1397940_at BF406368 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406368 /DB_XREF=gi:11394343 /DB_XREF=UI-R-CA1-bjf-d-06-0-UI.s1 /CLONE=UI-R-CA1-bjf-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.62550.1 /TIER=ConsEnd /STK=0 /UG=Rn.62550 /UG_TITLE=ESTs BF406368 Heat shock protein family B (small), member 11 Hspb11 685284 NM_001131002 0007155 // cell adhesion // inferred from electronic annotation 0005929 // cilium // not recorded /// 0005929 // cilium // inferred from electronic annotation /// 0030992 // intraflagellar transport particle B // not recorded /// 0030992 // intraflagellar transport particle B // inferred from electronic annotation 1397941_at AW533522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533522 /DB_XREF=gi:7175936 /DB_XREF=UI-R-BU0-ani-h-04-0-UI.s1 /CLONE=UI-R-BU0-ani-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.62915.1 /TIER=ConsEnd /STK=0 /UG=Rn.62915 /UG_TITLE=ESTs, Highly similar to T08781 hypothetical protein DKFZp586L1220.1 (H.sapiens) AW533522 similar to Zinc finger CCCH-type domain containing protein 6 LOC678741 678741 XM_001053214 /// XM_002725533 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1397942_at BF552711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552711 /DB_XREF=gi:11662441 /DB_XREF=UI-R-C0-ix-d-07-0-UI.r1 /CLONE=UI-R-C0-ix-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.76212.1 /TIER=ConsEnd /STK=0 /UG=Rn.76212 /UG_TITLE=ESTs BF552711 1397943_at AW530549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530549 /DB_XREF=gi:7172963 /DB_XREF=UI-R-BT1-akp-d-10-0-UI.s1 /CLONE=UI-R-BT1-akp-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.41664.1 /TIER=ConsEnd /STK=0 /UG=Rn.41664 /UG_TITLE=ESTs AW530549 1397944_at BE096457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096457 /DB_XREF=gi:8487388 /DB_XREF=UI-R-BU0-apg-d-03-0-UI.s1 /CLONE=UI-R-BU0-apg-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.66757.1 /TIER=ConsEnd /STK=0 /UG=Rn.66757 /UG_TITLE=ESTs BE096457 1397945_at BI278831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278831 /DB_XREF=gi:14926060 /DB_XREF=UI-R-CX0-bwx-d-07-0-UI.s1 /CLONE=UI-R-CX0-bwx-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.30680.1 /TIER=ConsEnd /STK=0 /UG=Rn.30680 /UG_TITLE=ESTs BI278831 WNT1 inducible signaling pathway protein 3 Wisp3 499461 NM_001170483 0001558 // regulation of cell growth // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005520 // insulin-like growth factor binding // inferred from electronic annotation 1397946_at AI549261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549261 /DB_XREF=gi:4466749 /DB_XREF=UI-R-C3-tx-e-08-0-UI.s1 /CLONE=UI-R-C3-tx-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.41852.1 /TIER=ConsEnd /STK=0 /UG=Rn.41852 /UG_TITLE=ESTs AI549261 SEC14-like 1 (S. cerevisiae) Sec14l1 360668 NM_001108309 1397947_at AW530193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530193 /DB_XREF=gi:7172607 /DB_XREF=UI-R-C4-ale-f-10-0-UI.s1 /CLONE=UI-R-C4-ale-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.45019.1 /TIER=ConsEnd /STK=0 /UG=Rn.45019 /UG_TITLE=ESTs, Highly similar to A Chain A, Second Calponin Homology Domain From Utrophin {SUB 144-261 (H.sapiens) AW530193 utrophin Utrn 25600 NM_013070 0001954 // positive regulation of cell-matrix adhesion // not recorded /// 0001954 // positive regulation of cell-matrix adhesion // inferred from electronic annotation /// 0007528 // neuromuscular junction development // inferred from direct assay 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0016010 // dystrophin-associated glycoprotein complex // not recorded /// 0016010 // dystrophin-associated glycoprotein complex // inferred from electronic annotation /// 0030054 // cell junction // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030426 // growth cone // inferred from direct assay /// 0030864 // cortical actin cytoskeleton // inferred from direct assay /// 0031594 // neuromuscular junction // inferred from direct assay /// 0031594 // neuromuscular junction // not recorded /// 0031594 // neuromuscular junction // inferred from electronic annotation /// 0045202 // synapse // not recorded /// 0045202 // synapse // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0051015 // actin filament binding // inferred from direct assay 1397948_s_at BF392047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392047 /DB_XREF=gi:11376904 /DB_XREF=UI-R-CA0-bfg-f-02-0-UI.s1 /CLONE=UI-R-CA0-bfg-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.65255.1 /TIER=ConsEnd /STK=0 /UG=Rn.65255 /UG_TITLE=ESTs, Weakly similar to T18967 hypothetical protein C05G5.5 - Caenorhabditis elegans (C.elegans) BF392047 similar to C05G5.5 LOC689914 689914 XM_001072500 1397949_at BE117532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117532 /DB_XREF=gi:8509637 /DB_XREF=UI-R-BS1-ayo-h-10-0-UI.s1 /CLONE=UI-R-BS1-ayo-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.52855.1 /TIER=ConsEnd /STK=0 /UG=Rn.52855 /UG_TITLE=ESTs BE117532 1397950_at H34608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H34608 /DB_XREF=gi:980025 /DB_XREF=EST111678 /CLONE=RPNCJ79 /FEA=EST /CNT=2 /TID=Rn.77492.1 /TIER=ConsEnd /STK=0 /UG=Rn.77492 /UG_TITLE=ESTs H34608 Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) Smg7 360855 NM_001191549 /// XM_001071081 /// XM_002724873 /// XM_002728013 /// XM_341132 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0051721 // protein phosphatase 2A binding // not recorded 1397951_at BI293109 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI293109 /DB_XREF=gi:14954291 /DB_XREF=UI-R-DK0-cdp-f-11-0-UI.s1 /CLONE=UI-R-DK0-cdp-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.69988.1 /TIER=ConsEnd /STK=0 /UG=Rn.69988 /UG_TITLE=ESTs BI293109 1397952_at BM389255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389255 /DB_XREF=gi:18189308 /DB_XREF=UI-R-DZ0-cko-o-06-0-UI.s1 /CLONE=UI-R-DZ0-cko-o-06-0-UI /FEA=EST /CNT=2 /TID=Rn.57468.1 /TIER=ConsEnd /STK=0 /UG=Rn.57468 /UG_TITLE=ESTs BM389255 Bardet-Biedl syndrome 12 Bbs12 365770 XM_001068963 /// XM_345202 0044267 // cellular protein metabolic process // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1397953_at AI113261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI113261 /DB_XREF=gi:3513210 /DB_XREF=UI-R-C2p-nt-e-02-0-UI.s1 /CLONE=UI-R-C2p-nt-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.26971.1 /TIER=ConsEnd /STK=0 /UG=Rn.26971 /UG_TITLE=ESTs AI113261 similar to AMSH-family protein LOC687696 687696 NM_001115048 1397954_at AW527714 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527714 /DB_XREF=gi:7170128 /DB_XREF=UI-R-BT1-ajy-d-03-0-UI.s1 /CLONE=UI-R-BT1-ajy-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.48630.1 /TIER=ConsEnd /STK=0 /UG=Rn.48630 /UG_TITLE=ESTs AW527714 1397955_at BF409660 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409660 /DB_XREF=gi:11397635 /DB_XREF=UI-R-CA1-bln-b-08-0-UI.s1 /CLONE=UI-R-CA1-bln-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.61433.1 /TIER=ConsEnd /STK=0 /UG=Rn.61433 /UG_TITLE=ESTs, Moderately similar to T45294 hypothetical protein KIAA1088 (H.sapiens) BF409660 regulator of telomere elongation helicase 1 Rtel1 362288 NM_001191857 /// XM_001057789 /// XM_342602 0000723 // telomere maintenance // not recorded /// 0000723 // telomere maintenance // inferred from sequence or structural similarity /// 0000723 // telomere maintenance // inferred from electronic annotation /// 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010569 // regulation of double-strand break repair via homologous recombination // not recorded /// 0010569 // regulation of double-strand break repair via homologous recombination // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0004003 // ATP-dependent DNA helicase activity // not recorded /// 0004003 // ATP-dependent DNA helicase activity // inferred from sequence or structural similarity /// 0004003 // ATP-dependent DNA helicase activity // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation 1397956_at AI703949 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI703949 /DB_XREF=gi:4991849 /DB_XREF=UI-R-AC1-xp-e-06-0-UI.s1 /CLONE=UI-R-AC1-xp-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.40679.1 /TIER=ConsEnd /STK=0 /UG=Rn.40679 /UG_TITLE=ESTs AI703949 Similar to RIKEN cDNA 9530058B02 RGD1311273 685545 NM_001109475 1397957_at AA955460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955460 /DB_XREF=gi:4237815 /DB_XREF=UI-R-A1-ew-h-07-0-UI.s1 /CLONE=UI-R-A1-ew-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.73491.1 /TIER=ConsEnd /STK=0 /UG=Rn.73491 /UG_TITLE=ESTs AA955460 1397958_at BE111695 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111695 /DB_XREF=gi:8503800 /DB_XREF=UI-R-BJ1-avv-g-02-0-UI.s1 /CLONE=UI-R-BJ1-avv-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.15124.1 /TIER=ConsEnd /STK=0 /UG=Rn.15124 /UG_TITLE=ESTs BE111695 1397959_at AW534218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534218 /DB_XREF=gi:7176632 /DB_XREF=UI-R-C4-alq-f-09-0-UI.s1 /CLONE=UI-R-C4-alq-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.44927.1 /TIER=ConsEnd /STK=0 /UG=Rn.44927 /UG_TITLE=ESTs, Weakly similar to YEMANUCLEIN-ALPHA (D.melanogaster) AW534218 ubinuclein 2 Ubn2 312248 NM_001134553 1397960_at AI030168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030168 /DB_XREF=gi:3247994 /DB_XREF=UI-R-C0-it-b-08-0-UI.s1 /CLONE=UI-R-C0-it-b-08-0-UI /FEA=EST /CNT=2 /TID=Rn.44341.1 /TIER=ConsEnd /STK=0 /UG=Rn.44341 /UG_TITLE=ESTs, Weakly similar to T00084 hypothetical protein KIAA0512 (H.sapiens) AI030168 armadillo repeat containing, X-linked 3 Armcx3 367902 NM_001014273 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation 1397961_x_at AI010663 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI010663 /DB_XREF=gi:3224495 /DB_XREF=EST205114 /CLONE=RMUAP68 /FEA=EST /CNT=2 /TID=Rn.37632.1 /TIER=ConsEnd /STK=0 /UG=Rn.37632 /UG_TITLE=ESTs, Highly similar to UNR RAT UNR PROTEIN (R.norvegicus) AI010663 cold shock domain containing E1, RNA binding /// cold shock domain containing E1, RNA binding-like Csde1 /// LOC100362464 100362464 /// 117180 NM_054006 /// XM_002729113 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1397962_at BF405788 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405788 /DB_XREF=gi:11393758 /DB_XREF=UI-R-CA1-bje-m-13-0-UI.s1 /CLONE=UI-R-CA1-bje-m-13-0-UI /FEA=EST /CNT=2 /TID=Rn.42463.1 /TIER=ConsEnd /STK=0 /UG=Rn.42463 /UG_TITLE=ESTs BF405788 1397963_x_at BE106401 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106401 /DB_XREF=gi:8498503 /DB_XREF=UI-R-BT1-asv-e-08-0-UI.s1 /CLONE=UI-R-BT1-asv-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.50943.1 /TIER=ConsEnd /STK=0 /UG=Rn.50943 /UG_TITLE=ESTs, Moderately similar to JC7321 N-acetylneuraminic acid 9-phosphate synthase (EC 4.1.3.-) - mouse (M.musculus) BE106401 N-acetylneuraminic acid synthase Nans 298071 NM_001106655 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0016051 // carbohydrate biosynthetic process // inferred from electronic annotation 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0047444 // N-acylneuraminate-9-phosphate synthase activity // inferred from electronic annotation /// 0047444 // N-acylneuraminate-9-phosphate synthase activity // not recorded 1397964_at AI406662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406662 /DB_XREF=gi:4250166 /DB_XREF=EST234949 /CLONE=ROVDV37 /FEA=EST /CNT=2 /TID=Rn.55803.1 /TIER=ConsEnd /STK=0 /UG=Rn.55803 /UG_TITLE=ESTs, Weakly similar to DnaJ-like protein (Rattus norvegicus) (R.norvegicus) AI406662 SEC63 homolog (S. cerevisiae) Sec63 309858 NM_001107637 0006457 // protein folding // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1397965_at BF405066 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405066 /DB_XREF=gi:11393041 /DB_XREF=UI-R-CA1-bip-b-12-0-UI.s1 /CLONE=UI-R-CA1-bip-b-12-0-UI /FEA=EST /CNT=6 /TID=Rn.63525.1 /TIER=ConsEnd /STK=5 /UG=Rn.63525 /UG_TITLE=ESTs BF405066 porcupine homolog (Drosophila) Porcn 317368 NM_001173355 /// XM_001063037 /// XM_228781 0009100 // glycoprotein metabolic process // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded 0005515 // protein binding // not recorded 1397966_at BF403413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403413 /DB_XREF=gi:11391350 /DB_XREF=UI-R-CA1-biy-o-04-0-UI.s1 /CLONE=UI-R-CA1-biy-o-04-0-UI /FEA=EST /CNT=5 /TID=Rn.60266.1 /TIER=ConsEnd /STK=5 /UG=Rn.60266 /UG_TITLE=ESTs BF403413 1397967_at BF413391 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413391 /DB_XREF=gi:11401380 /DB_XREF=UI-R-CA0-boe-e-07-0-UI.s1 /CLONE=UI-R-CA0-boe-e-07-0-UI /FEA=EST /CNT=5 /TID=Rn.62564.1 /TIER=ConsEnd /STK=5 /UG=Rn.62564 /UG_TITLE=ESTs BF413391 1397968_at BF399686 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399686 /DB_XREF=gi:11384696 /DB_XREF=UI-R-CA0-bhx-c-07-0-UI.s1 /CLONE=UI-R-CA0-bhx-c-07-0-UI /FEA=EST /CNT=5 /TID=Rn.62969.1 /TIER=ConsEnd /STK=5 /UG=Rn.62969 /UG_TITLE=ESTs BF399686 1397969_at BF401230 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401230 /DB_XREF=gi:11389205 /DB_XREF=UI-R-CA0-bgq-b-07-0-UI.s1 /CLONE=UI-R-CA0-bgq-b-07-0-UI /FEA=EST /CNT=5 /TID=Rn.53562.1 /TIER=ConsEnd /STK=5 /UG=Rn.53562 /UG_TITLE=ESTs BF401230 1397970_at AW252251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW252251 /DB_XREF=gi:6595882 /DB_XREF=UI-R-BJ0-adt-f-03-0-UI.s1 /CLONE=UI-R-BJ0-adt-f-03-0-UI /FEA=EST /CNT=5 /TID=Rn.44661.1 /TIER=ConsEnd /STK=5 /UG=Rn.44661 /UG_TITLE=ESTs, Highly similar to T08776 hypothetical protein DKFZp586D0920.1 (H.sapiens) AW252251 1397971_at BE111159 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111159 /DB_XREF=gi:8503264 /DB_XREF=UI-R-BJ1-auv-c-09-0-UI.s1 /CLONE=UI-R-BJ1-auv-c-09-0-UI /FEA=EST /CNT=5 /TID=Rn.49979.1 /TIER=ConsEnd /STK=5 /UG=Rn.49979 /UG_TITLE=ESTs BE111159 1397972_at BF390528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390528 /DB_XREF=gi:11375369 /DB_XREF=UI-R-CA1-bcc-a-08-0-UI.s1 /CLONE=UI-R-CA1-bcc-a-08-0-UI /FEA=EST /CNT=5 /TID=Rn.61322.1 /TIER=ConsEnd /STK=5 /UG=Rn.61322 /UG_TITLE=ESTs BF390528 1397973_x_at AW533355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533355 /DB_XREF=gi:7175769 /DB_XREF=UI-R-BU0-anf-h-09-0-UI.s1 /CLONE=UI-R-BU0-anf-h-09-0-UI /FEA=EST /CNT=5 /TID=Rn.48007.1 /TIER=ConsEnd /STK=5 /UG=Rn.48007 /UG_TITLE=ESTs, Weakly similar to (Segment 1 of 2) COLLAGEN ALPHA 1(I) CHAIN (R.norvegicus) AW533355 Temporarily Assigned Gene name family member (tag-241)-like LOC100363805 100363805 XM_002725458 1397974_at BE110207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110207 /DB_XREF=gi:8502312 /DB_XREF=UI-R-CA0-axk-c-12-0-UI.s1 /CLONE=UI-R-CA0-axk-c-12-0-UI /FEA=EST /CNT=5 /TID=Rn.59431.1 /TIER=ConsEnd /STK=5 /UG=Rn.59431 /UG_TITLE=ESTs BE110207 1397975_at BF393089 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393089 /DB_XREF=gi:11377949 /DB_XREF=UI-R-CA0-bgu-d-06-0-UI.s1 /CLONE=UI-R-CA0-bgu-d-06-0-UI /FEA=EST /CNT=5 /TID=Rn.63636.1 /TIER=ConsEnd /STK=4 /UG=Rn.63636 /UG_TITLE=ESTs BF393089 1397976_at BF408806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408806 /DB_XREF=gi:11396781 /DB_XREF=UI-R-BT1-bne-f-04-0-UI.s1 /CLONE=UI-R-BT1-bne-f-04-0-UI /FEA=EST /CNT=5 /TID=Rn.47063.1 /TIER=ConsEnd /STK=4 /UG=Rn.47063 /UG_TITLE=ESTs BF408806 similar to C14orf25 protein RGD1560556 366631 NM_001108983 1397977_at AI548601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548601 /DB_XREF=gi:4466089 /DB_XREF=UI-R-C3-td-h-07-0-UI.s1 /CLONE=UI-R-C3-td-h-07-0-UI /FEA=EST /CNT=5 /TID=Rn.40583.1 /TIER=ConsEnd /STK=4 /UG=Rn.40583 /UG_TITLE=ESTs AI548601 1397978_at BF404601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404601 /DB_XREF=gi:11392576 /DB_XREF=UI-R-CA1-bih-d-04-0-UI.s1 /CLONE=UI-R-CA1-bih-d-04-0-UI /FEA=EST /CNT=4 /TID=Rn.59961.1 /TIER=ConsEnd /STK=4 /UG=Rn.59961 /UG_TITLE=ESTs BF404601 1397979_at BF405941 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405941 /DB_XREF=gi:11393916 /DB_XREF=UI-R-CA1-bii-g-10-0-UI.s1 /CLONE=UI-R-CA1-bii-g-10-0-UI /FEA=EST /CNT=4 /TID=Rn.59901.1 /TIER=ConsEnd /STK=4 /UG=Rn.59901 /UG_TITLE=ESTs BF405941 1397980_at BF401691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401691 /DB_XREF=gi:11389666 /DB_XREF=UI-R-CA0-bgn-e-07-0-UI.s1 /CLONE=UI-R-CA0-bgn-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.64360.1 /TIER=ConsEnd /STK=4 /UG=Rn.64360 /UG_TITLE=ESTs BF401691 1397981_at BF403833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403833 /DB_XREF=gi:11391808 /DB_XREF=UI-R-CA1-bix-h-07-0-UI.s1 /CLONE=UI-R-CA1-bix-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.59166.1 /TIER=ConsEnd /STK=4 /UG=Rn.59166 /UG_TITLE=ESTs BF403833 1397982_at BF404455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404455 /DB_XREF=gi:11392430 /DB_XREF=UI-R-CA1-bif-e-07-0-UI.s1 /CLONE=UI-R-CA1-bif-e-07-0-UI /FEA=EST /CNT=4 /TID=Rn.60511.1 /TIER=ConsEnd /STK=4 /UG=Rn.60511 /UG_TITLE=ESTs BF404455 1397983_at BF403330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403330 /DB_XREF=gi:11391305 /DB_XREF=UI-R-CA1-biy-g-04-0-UI.s1 /CLONE=UI-R-CA1-biy-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.61467.1 /TIER=ConsEnd /STK=4 /UG=Rn.61467 /UG_TITLE=ESTs BF403330 1397984_at BF413720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413720 /DB_XREF=gi:11401709 /DB_XREF=UI-R-CA0-boh-g-04-0-UI.s1 /CLONE=UI-R-CA0-boh-g-04-0-UI /FEA=EST /CNT=4 /TID=Rn.62436.1 /TIER=ConsEnd /STK=4 /UG=Rn.62436 /UG_TITLE=ESTs BF413720 1397985_at BF403920 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403920 /DB_XREF=gi:11391895 /DB_XREF=UI-R-CA1-bjd-h-07-0-UI.s1 /CLONE=UI-R-CA1-bjd-h-07-0-UI /FEA=EST /CNT=4 /TID=Rn.60383.1 /TIER=ConsEnd /STK=4 /UG=Rn.60383 /UG_TITLE=ESTs BF403920 1397986_at BF389825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389825 /DB_XREF=gi:11374661 /DB_XREF=UI-R-BS2-bdp-b-10-0-UI.s1 /CLONE=UI-R-BS2-bdp-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.58907.1 /TIER=ConsEnd /STK=4 /UG=Rn.58907 /UG_TITLE=ESTs BF389825 1397987_at BF390656 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390656 /DB_XREF=gi:11375503 /DB_XREF=UI-R-CA1-bck-g-03-0-UI.s1 /CLONE=UI-R-CA1-bck-g-03-0-UI /FEA=EST /CNT=4 /TID=Rn.60471.1 /TIER=ConsEnd /STK=4 /UG=Rn.60471 /UG_TITLE=ESTs BF390656 1397988_at BF401477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401477 /DB_XREF=gi:11389452 /DB_XREF=UI-R-CA0-bgl-a-09-0-UI.s1 /CLONE=UI-R-CA0-bgl-a-09-0-UI /FEA=EST /CNT=4 /TID=Rn.59814.1 /TIER=ConsEnd /STK=4 /UG=Rn.59814 /UG_TITLE=ESTs BF401477 AP2 associated kinase 1 Aak1 500244 NM_001173450 /// XM_001070331 /// XM_575594 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005905 // coated pit // inferred from electronic annotation /// 0071439 // clathrin complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1397989_at BF401779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401779 /DB_XREF=gi:11389754 /DB_XREF=UI-R-CA0-bgo-f-01-0-UI.s1 /CLONE=UI-R-CA0-bgo-f-01-0-UI /FEA=EST /CNT=4 /TID=Rn.51272.1 /TIER=ConsEnd /STK=4 /UG=Rn.51272 /UG_TITLE=ESTs BF401779 1397990_at BE108616 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108616 /DB_XREF=gi:8500721 /DB_XREF=UI-R-CA0-axg-d-06-0-UI.s1 /CLONE=UI-R-CA0-axg-d-06-0-UI /FEA=EST /CNT=4 /TID=Rn.51549.1 /TIER=ConsEnd /STK=4 /UG=Rn.51549 /UG_TITLE=ESTs BE108616 1397991_at BF409291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409291 /DB_XREF=gi:11397266 /DB_XREF=UI-R-CA1-ble-c-10-0-UI.s1 /CLONE=UI-R-CA1-ble-c-10-0-UI /FEA=EST /CNT=4 /TID=Rn.61303.1 /TIER=ConsEnd /STK=4 /UG=Rn.61303 /UG_TITLE=ESTs BF409291 1397992_at BF402133 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402133 /DB_XREF=gi:11390072 /DB_XREF=UI-R-CA1-bim-h-09-0-UI.s1 /CLONE=UI-R-CA1-bim-h-09-0-UI /FEA=EST /CNT=4 /TID=Rn.59916.1 /TIER=ConsEnd /STK=4 /UG=Rn.59916 /UG_TITLE=ESTs BF402133 1397993_at BF404649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404649 /DB_XREF=gi:11392624 /DB_XREF=UI-R-CA1-bib-a-07-0-UI.s1 /CLONE=UI-R-CA1-bib-a-07-0-UI /FEA=EST /CNT=4 /TID=Rn.61389.1 /TIER=ConsEnd /STK=4 /UG=Rn.61389 /UG_TITLE=ESTs BF404649 1397994_at BF392228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392228 /DB_XREF=gi:11377085 /DB_XREF=UI-R-CA0-bff-f-09-0-UI.s1 /CLONE=UI-R-CA0-bff-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.57725.1 /TIER=ConsEnd /STK=4 /UG=Rn.57725 /UG_TITLE=ESTs BF392228 1397995_at BF386447 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386447 /DB_XREF=gi:11371271 /DB_XREF=UI-R-CA1-bbd-f-04-0-UI.s1 /CLONE=UI-R-CA1-bbd-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.56739.1 /TIER=ConsEnd /STK=4 /UG=Rn.56739 /UG_TITLE=ESTs BF386447 1397996_at BF387766 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387766 /DB_XREF=gi:11372631 /DB_XREF=UI-R-CA1-bbv-a-03-0-UI.s1 /CLONE=UI-R-CA1-bbv-a-03-0-UI /FEA=EST /CNT=4 /TID=Rn.62785.1 /TIER=ConsEnd /STK=4 /UG=Rn.62785 /UG_TITLE=ESTs, Weakly similar to S21976 probable RNA-directed DNA polymerase (R.norvegicus) BF387766 1397997_at BF402505 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402505 /DB_XREF=gi:11390480 /DB_XREF=UI-R-CA0-bhr-b-07-0-UI.s1 /CLONE=UI-R-CA0-bhr-b-07-0-UI /FEA=EST /CNT=4 /TID=Rn.58017.1 /TIER=ConsEnd /STK=4 /UG=Rn.58017 /UG_TITLE=ESTs, Weakly similar to T14271 Doc4 protein, stress-induced - mouse (M.musculus) BF402505 odz, odd Oz/ten-m homolog 2 (Drosophila) Odz2 117242 NM_020088 0007165 // signal transduction // inferred from electronic annotation /// 0007417 // central nervous system development // traceable author statement 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004180 // carboxypeptidase activity // inferred from electronic annotation 1397998_at BF400054 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400054 /DB_XREF=gi:11385029 /DB_XREF=UI-R-CA1-bia-f-09-0-UI.s1 /CLONE=UI-R-CA1-bia-f-09-0-UI /FEA=EST /CNT=4 /TID=Rn.61314.1 /TIER=ConsEnd /STK=4 /UG=Rn.61314 /UG_TITLE=ESTs BF400054 rCG26795-like LOC100365450 100365450 XM_002726180 1397999_at BF386502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386502 /DB_XREF=gi:11371291 /DB_XREF=UI-R-CA1-bbd-h-01-0-UI.s1 /CLONE=UI-R-CA1-bbd-h-01-0-UI /FEA=EST /CNT=4 /TID=Rn.60591.1 /TIER=ConsEnd /STK=4 /UG=Rn.60591 /UG_TITLE=ESTs BF386502 1398000_at BF394082 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394082 /DB_XREF=gi:11378946 /DB_XREF=UI-R-CA0-bgy-h-06-0-UI.s1 /CLONE=UI-R-CA0-bgy-h-06-0-UI /FEA=EST /CNT=4 /TID=Rn.53538.1 /TIER=ConsEnd /STK=4 /UG=Rn.53538 /UG_TITLE=ESTs BF394082 1398001_at BF389870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389870 /DB_XREF=gi:11374708 /DB_XREF=UI-R-BS2-bdp-f-07-0-UI.s1 /CLONE=UI-R-BS2-bdp-f-07-0-UI /FEA=EST /CNT=4 /TID=Rn.59026.1 /TIER=ConsEnd /STK=4 /UG=Rn.59026 /UG_TITLE=ESTs BF389870 1398002_at BF409649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409649 /DB_XREF=gi:11397624 /DB_XREF=UI-R-CA1-bln-a-04-0-UI.s1 /CLONE=UI-R-CA1-bln-a-04-0-UI /FEA=EST /CNT=4 /TID=Rn.61465.1 /TIER=ConsEnd /STK=4 /UG=Rn.61465 /UG_TITLE=ESTs BF409649 1398003_at BF400768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400768 /DB_XREF=gi:11388743 /DB_XREF=UI-R-CA0-bhf-d-05-0-UI.s1 /CLONE=UI-R-CA0-bhf-d-05-0-UI /FEA=EST /CNT=4 /TID=Rn.59709.1 /TIER=ConsEnd /STK=4 /UG=Rn.59709 /UG_TITLE=ESTs BF400768 1398004_at BF404835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404835 /DB_XREF=gi:11392810 /DB_XREF=UI-R-CA1-bic-c-06-0-UI.s1 /CLONE=UI-R-CA1-bic-c-06-0-UI /FEA=EST /CNT=4 /TID=Rn.59911.1 /TIER=ConsEnd /STK=4 /UG=Rn.59911 /UG_TITLE=ESTs BF404835 1398005_at BM382880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM382880 /DB_XREF=gi:18182933 /DB_XREF=UI-R-BT1-bko-h-11-0-UI.s1 /CLONE=UI-R-BT1-bko-h-11-0-UI /FEA=EST /CNT=4 /TID=Rn.61251.1 /TIER=ConsEnd /STK=4 /UG=Rn.61251 /UG_TITLE=ESTs BM382880 kelch repeat and BTB (POZ) domain containing 2 Kbtbd2 312372 NM_001107861 0005515 // protein binding // inferred from electronic annotation 1398006_at AI454795 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454795 /DB_XREF=gi:4296224 /DB_XREF=UI-R-C2p-qm-d-08-0-UI.s1 /CLONE=UI-R-C2p-qm-d-08-0-UI /FEA=EST /CNT=4 /TID=Rn.36521.1 /TIER=ConsEnd /STK=4 /UG=Rn.36521 /UG_TITLE=ESTs AI454795 Similar to Fgfr1 oncogene partner LOC683722 683722 NM_001101008 0006469 // negative regulation of protein kinase activity // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0030307 // positive regulation of cell growth // inferred from electronic annotation /// 0030335 // positive regulation of cell migration // inferred from electronic annotation /// 0034453 // microtubule anchoring // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0030292 // protein tyrosine kinase inhibitor activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation 1398007_at AI713125 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI713125 /DB_XREF=gi:5016925 /DB_XREF=UI-R-Y0-aba-e-09-0-UI.s1 /CLONE=UI-R-Y0-aba-e-09-0-UI /FEA=EST /CNT=5 /TID=Rn.40851.1 /TIER=ConsEnd /STK=3 /UG=Rn.40851 /UG_TITLE=ESTs AI713125 1398008_at BE120093 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120093 /DB_XREF=gi:8512198 /DB_XREF=UI-R-CA0-bak-e-04-0-UI.s1 /CLONE=UI-R-CA0-bak-e-04-0-UI /FEA=EST /CNT=4 /TID=Rn.64341.1 /TIER=ConsEnd /STK=3 /UG=Rn.64341 /UG_TITLE=ESTs BE120093 zinc finger homeobox 2 Zfhx2 305888 NM_001098803 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1398009_at AW528388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528388 /DB_XREF=gi:7170802 /DB_XREF=UI-R-BT1-ajx-h-04-0-UI.s1 /CLONE=UI-R-BT1-ajx-h-04-0-UI /FEA=EST /CNT=4 /TID=Rn.66626.1 /TIER=ConsEnd /STK=3 /UG=Rn.66626 /UG_TITLE=ESTs AW528388 similar to RIKEN cDNA 4921536K21 RGD1308775 305476 NM_001107233 1398010_at BF405882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405882 /DB_XREF=gi:11393857 /DB_XREF=UI-R-CA1-bii-b-05-0-UI.s1 /CLONE=UI-R-CA1-bii-b-05-0-UI /FEA=EST /CNT=4 /TID=Rn.60943.1 /TIER=ConsEnd /STK=3 /UG=Rn.60943 /UG_TITLE=ESTs BF405882 1398011_at AI555486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555486 /DB_XREF=gi:4487849 /DB_XREF=UI-R-C2p-qq-h-09-0-UI.s1 /CLONE=UI-R-C2p-qq-h-09-0-UI /FEA=EST /CNT=4 /TID=Rn.35346.1 /TIER=ConsEnd /STK=3 /UG=Rn.35346 /UG_TITLE=ESTs AI555486 1398012_at BF412119 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412119 /DB_XREF=gi:11400108 /DB_XREF=UI-R-BT1-bmy-h-08-0-UI.s1 /CLONE=UI-R-BT1-bmy-h-08-0-UI /FEA=EST /CNT=4 /TID=Rn.49160.1 /TIER=ConsEnd /STK=3 /UG=Rn.49160 /UG_TITLE=ESTs BF412119 1398013_at AI112236 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112236 /DB_XREF=gi:3512185 /DB_XREF=UI-R-Y0-mh-e-08-0-UI.s1 /CLONE=UI-R-Y0-mh-e-08-0-UI /FEA=EST /CNT=4 /TID=Rn.26740.1 /TIER=ConsEnd /STK=3 /UG=Rn.26740 /UG_TITLE=ESTs, Weakly similar to S26689 hypothetical protein hc1 - mouse (M.musculus) AI112236 1398014_at BG371918 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371918 /DB_XREF=gi:13268455 /DB_XREF=UI-R-CV0-brj-h-10-0-UI.s1 /CLONE=UI-R-CV0-brj-h-10-0-UI /FEA=EST /CNT=4 /TID=Rn.66877.1 /TIER=ConsEnd /STK=3 /UG=Rn.66877 /UG_TITLE=ESTs BG371918 1398015_at BF404613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404613 /DB_XREF=gi:11392588 /DB_XREF=UI-R-CA1-bih-e-10-0-UI.s1 /CLONE=UI-R-CA1-bih-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.60527.1 /TIER=ConsEnd /STK=3 /UG=Rn.60527 /UG_TITLE=ESTs BF404613 1398016_at BI850137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI850137 /DB_XREF=gi:16003624 /DB_XREF=imageqc_10_2000slz463bdff41.x1 /CLONE=IMAGE:4176354 /FEA=EST /CNT=3 /TID=Rn.66162.1 /TIER=ConsEnd /STK=3 /UG=Rn.66162 /UG_TITLE=ESTs BI850137 stearoyl-CoA desaturase (delta-9-desaturase) Scd 83792 NM_031841 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // traceable author statement /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0042552 // myelination // inferred from expression pattern /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded 0004768 // stearoyl-CoA 9-desaturase activity // inferred from direct assay /// 0004768 // stearoyl-CoA 9-desaturase activity // traceable author statement /// 0004768 // stearoyl-CoA 9-desaturase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016717 // oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water // inferred from electronic annotation 1398017_at BF404952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404952 /DB_XREF=gi:11392927 /DB_XREF=UI-R-CA1-bij-f-08-0-UI.s1 /CLONE=UI-R-CA1-bij-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.61332.1 /TIER=ConsEnd /STK=3 /UG=Rn.61332 /UG_TITLE=ESTs BF404952 1398018_at BF406265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406265 /DB_XREF=gi:11394240 /DB_XREF=UI-R-CA1-bjf-o-10-0-UI.s1 /CLONE=UI-R-CA1-bjf-o-10-0-UI /FEA=EST /CNT=3 /TID=Rn.64457.1 /TIER=ConsEnd /STK=3 /UG=Rn.64457 /UG_TITLE=ESTs BF406265 1398019_at BG376789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376789 /DB_XREF=gi:13301261 /DB_XREF=UI-R-CA1-blh-a-08-0-UI.s1 /CLONE=UI-R-CA1-blh-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.62845.1 /TIER=ConsEnd /STK=3 /UG=Rn.62845 /UG_TITLE=ESTs BG376789 1398020_at BF393027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393027 /DB_XREF=gi:11377887 /DB_XREF=UI-R-CA0-bgp-b-02-0-UI.s1 /CLONE=UI-R-CA0-bgp-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.52209.1 /TIER=ConsEnd /STK=3 /UG=Rn.52209 /UG_TITLE=ESTs BF393027 microRNA mir-23b Mir23b 100314002 NR_031826 1398021_at AI411984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411984 /DB_XREF=gi:4255488 /DB_XREF=EST240278 /CLONE=RKIEJ25 /FEA=EST /CNT=3 /TID=Rn.43644.1 /TIER=ConsEnd /STK=3 /UG=Rn.43644 /UG_TITLE=ESTs AI411984 similar to hypothetical protein 4930474N05 /// similar to hypothetical protein 4930474N05 RGD1559804 /// RGD1565349 498591 /// 502055 NM_001113787 /// XM_002725171 /// XM_002728364 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation 1398022_at BF404957 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404957 /DB_XREF=gi:11392932 /DB_XREF=UI-R-CA1-bij-g-01-0-UI.s1 /CLONE=UI-R-CA1-bij-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.59991.1 /TIER=ConsEnd /STK=3 /UG=Rn.59991 /UG_TITLE=ESTs BF404957 1398023_at BF402383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402383 /DB_XREF=gi:11390358 /DB_XREF=UI-R-CA0-bhn-f-01-0-UI.s1 /CLONE=UI-R-CA0-bhn-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.62332.1 /TIER=ConsEnd /STK=3 /UG=Rn.62332 /UG_TITLE=ESTs BF402383 1398024_at BE110250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110250 /DB_XREF=gi:8502355 /DB_XREF=UI-R-CA0-axk-g-10-0-UI.s1 /CLONE=UI-R-CA0-axk-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.51850.1 /TIER=ConsEnd /STK=3 /UG=Rn.51850 /UG_TITLE=ESTs BE110250 1398025_at BF403174 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403174 /DB_XREF=gi:11391149 /DB_XREF=UI-R-CA0-bhs-e-06-0-UI.s1 /CLONE=UI-R-CA0-bhs-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.57706.1 /TIER=ConsEnd /STK=3 /UG=Rn.57706 /UG_TITLE=ESTs BF403174 1398026_at BF393070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393070 /DB_XREF=gi:11377930 /DB_XREF=UI-R-CA0-bgu-b-01-0-UI.s1 /CLONE=UI-R-CA0-bgu-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.53589.1 /TIER=ConsEnd /STK=3 /UG=Rn.53589 /UG_TITLE=ESTs BF393070 1398027_at BF405186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405186 /DB_XREF=gi:11393156 /DB_XREF=UI-R-CA1-biq-g-08-0-UI.s1 /CLONE=UI-R-CA1-biq-g-08-0-UI /FEA=EST /CNT=3 /TID=Rn.60429.1 /TIER=ConsEnd /STK=3 /UG=Rn.60429 /UG_TITLE=ESTs BF405186 1398028_at BF399371 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399371 /DB_XREF=gi:11384375 /DB_XREF=UI-R-CA1-bjb-k-18-0-UI.s1 /CLONE=UI-R-CA1-bjb-k-18-0-UI /FEA=EST /CNT=3 /TID=Rn.59355.1 /TIER=ConsEnd /STK=3 /UG=Rn.59355 /UG_TITLE=ESTs BF399371 1398029_at BF394260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394260 /DB_XREF=gi:11379124 /DB_XREF=UI-R-CA0-bhc-g-04-0-UI.s1 /CLONE=UI-R-CA0-bhc-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.60123.1 /TIER=ConsEnd /STK=3 /UG=Rn.60123 /UG_TITLE=ESTs BF394260 similar to RIKEN cDNA 3110035E14 RGD1561849 500393 NM_001109260 1398030_at BE109892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109892 /DB_XREF=gi:8501997 /DB_XREF=UI-R-CA0-axi-e-12-0-UI.s1 /CLONE=UI-R-CA0-axi-e-12-0-UI /FEA=EST /CNT=3 /TID=Rn.51761.1 /TIER=ConsEnd /STK=3 /UG=Rn.51761 /UG_TITLE=ESTs BE109892 1398031_at BF406285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406285 /DB_XREF=gi:11394260 /DB_XREF=UI-R-CA1-bjf-d-07-0-UI.s1 /CLONE=UI-R-CA1-bjf-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.59908.1 /TIER=ConsEnd /STK=3 /UG=Rn.59908 /UG_TITLE=ESTs, Weakly similar to phytoene desaturase (Caenorhabditis elegans) (C.elegans) BF406285 pyridine nucleotide-disulphide oxidoreductase domain 2 Pyroxd2 309381 NM_001004261 0055114 // oxidation reduction // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation 1398032_at BE107602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107602 /DB_XREF=gi:8499707 /DB_XREF=UI-R-CA0-awv-f-02-0-UI.s1 /CLONE=UI-R-CA0-awv-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.51220.1 /TIER=ConsEnd /STK=3 /UG=Rn.51220 /UG_TITLE=ESTs BE107602 1398033_at BE121312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121312 /DB_XREF=gi:8513417 /DB_XREF=UI-R-CA0-baw-d-10-0-UI.s1 /CLONE=UI-R-CA0-baw-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.51608.1 /TIER=ConsEnd /STK=3 /UG=Rn.51608 /UG_TITLE=ESTs BE121312 1398034_at BF403840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403840 /DB_XREF=gi:11391815 /DB_XREF=UI-R-CA1-bix-j-01-0-UI.s1 /CLONE=UI-R-CA1-bix-j-01-0-UI /FEA=EST /CNT=3 /TID=Rn.60352.1 /TIER=ConsEnd /STK=3 /UG=Rn.60352 /UG_TITLE=ESTs BF403840 1398035_at BE106952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106952 /DB_XREF=gi:8499054 /DB_XREF=UI-R-BT1-ass-b-01-0-UI.s1 /CLONE=UI-R-BT1-ass-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.62004.1 /TIER=ConsEnd /STK=3 /UG=Rn.62004 /UG_TITLE=ESTs BE106952 1398036_at BF400233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400233 /DB_XREF=gi:11385244 /DB_XREF=UI-R-CA1-bjc-f-01-0-UI.s1 /CLONE=UI-R-CA1-bjc-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.59554.1 /TIER=ConsEnd /STK=3 /UG=Rn.59554 /UG_TITLE=ESTs BF400233 1398037_at BF390325 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390325 /DB_XREF=gi:11375171 /DB_XREF=UI-R-CA1-bcn-f-05-0-UI.s1 /CLONE=UI-R-CA1-bcn-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.56579.1 /TIER=ConsEnd /STK=3 /UG=Rn.56579 /UG_TITLE=ESTs, Highly similar to SNK_RAT SERINETHREONINE-PROTEIN KINASE SNK (SERUM INDUCIBLE KINASE) (R.norvegicus) BF390325 1398038_at BF399555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399555 /DB_XREF=gi:11384563 /DB_XREF=UI-R-CA1-bjb-p-08-0-UI.s1 /CLONE=UI-R-CA1-bjb-p-08-0-UI /FEA=EST /CNT=3 /TID=Rn.59410.1 /TIER=ConsEnd /STK=3 /UG=Rn.59410 /UG_TITLE=ESTs BF399555 1398039_at BE110002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110002 /DB_XREF=gi:8502107 /DB_XREF=UI-R-BJ1-aum-h-05-0-UI.s1 /CLONE=UI-R-BJ1-aum-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.49878.1 /TIER=ConsEnd /STK=3 /UG=Rn.49878 /UG_TITLE=ESTs BE110002 1398040_at BI300326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300326 /DB_XREF=gi:14976606 /DB_XREF=UI-R-CV2-cid-f-09-0-UI.s1 /CLONE=UI-R-CV2-cid-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.79834.1 /TIER=ConsEnd /STK=3 /UG=Rn.79834 /UG_TITLE=ESTs BI300326 1398041_at BF419478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419478 /DB_XREF=gi:11407467 /DB_XREF=UI-R-CA0-bns-c-04-0-UI.s1 /CLONE=UI-R-CA0-bns-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.63535.1 /TIER=ConsEnd /STK=3 /UG=Rn.63535 /UG_TITLE=ESTs BF419478 1398042_at BF400265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400265 /DB_XREF=gi:11385276 /DB_XREF=UI-R-CA1-bjc-j-21-0-UI.s1 /CLONE=UI-R-CA1-bjc-j-21-0-UI /FEA=EST /CNT=3 /TID=Rn.59578.1 /TIER=ConsEnd /STK=3 /UG=Rn.59578 /UG_TITLE=ESTs BF400265 1398043_at BE110332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110332 /DB_XREF=gi:8502437 /DB_XREF=UI-R-CA0-axl-g-03-0-UI.s1 /CLONE=UI-R-CA0-axl-g-03-0-UI /FEA=EST /CNT=3 /TID=Rn.51424.1 /TIER=ConsEnd /STK=3 /UG=Rn.51424 /UG_TITLE=ESTs, Weakly similar to A Chain A, Ribonuclease A From Rattus Norvegicus (R.norvegicus) BE110332 ribonuclease, RNase A family, 12 (non-active) Rnase12 364302 NM_001012209 0005576 // extracellular region // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004522 // pancreatic ribonuclease activity // inferred from electronic annotation 1398044_at BF392326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392326 /DB_XREF=gi:11377183 /DB_XREF=UI-R-CA0-bfn-g-07-0-UI.s1 /CLONE=UI-R-CA0-bfn-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.57796.1 /TIER=ConsEnd /STK=3 /UG=Rn.57796 /UG_TITLE=ESTs BF392326 1398045_at BE120285 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120285 /DB_XREF=gi:8512390 /DB_XREF=UI-R-CA0-bal-f-09-0-UI.s1 /CLONE=UI-R-CA0-bal-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.53511.1 /TIER=ConsEnd /STK=3 /UG=Rn.53511 /UG_TITLE=ESTs BE120285 1398046_at BF416612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416612 /DB_XREF=gi:11404601 /DB_XREF=UI-R-CA1-bkt-g-04-0-UI.s1 /CLONE=UI-R-CA1-bkt-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.63088.1 /TIER=ConsEnd /STK=3 /UG=Rn.63088 /UG_TITLE=ESTs BF416612 family with sequence similarity 20, member B Fam20b 304885 NM_001107187 0005794 // Golgi apparatus // not recorded 0016773 // phosphotransferase activity, alcohol group as acceptor // not recorded 1398047_at BF394787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394787 /DB_XREF=gi:11379745 /DB_XREF=UI-R-CA0-bfz-a-01-0-UI.s1 /CLONE=UI-R-CA0-bfz-a-01-0-UI /FEA=EST /CNT=3 /TID=Rn.51572.1 /TIER=ConsEnd /STK=3 /UG=Rn.51572 /UG_TITLE=ESTs BF394787 1398048_at BF402809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402809 /DB_XREF=gi:11390784 /DB_XREF=UI-R-CA0-bhh-b-08-0-UI.s1 /CLONE=UI-R-CA0-bhh-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.62373.1 /TIER=ConsEnd /STK=3 /UG=Rn.62373 /UG_TITLE=ESTs BF402809 integrator complex subunit 10 Ints10 290679 NM_001134416 0016180 // snRNA processing // inferred from electronic annotation /// 0016180 // snRNA processing // not recorded 0032039 // integrator complex // inferred from electronic annotation /// 0032039 // integrator complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398049_at BF405475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405475 /DB_XREF=gi:11393450 /DB_XREF=UI-R-CA1-bix-m-05-0-UI.s1 /CLONE=UI-R-CA1-bix-m-05-0-UI /FEA=EST /CNT=3 /TID=Rn.64425.1 /TIER=ConsEnd /STK=3 /UG=Rn.64425 /UG_TITLE=ESTs BF405475 nitrilase 1 Nit1 289222 NM_001082580 /// NM_182668 0006807 // nitrogen compound metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0016787 // hydrolase activity // inferred from electronic annotation /// 0016810 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds // inferred from electronic annotation 1398050_at BI300450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300450 /DB_XREF=gi:14976730 /DB_XREF=UI-R-CV2-cif-b-05-0-UI.s1 /CLONE=UI-R-CV2-cif-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.76761.1 /TIER=ConsEnd /STK=3 /UG=Rn.76761 /UG_TITLE=ESTs BI300450 1398051_at BF392993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392993 /DB_XREF=gi:11377853 /DB_XREF=UI-R-CA0-bfr-f-06-0-UI.s1 /CLONE=UI-R-CA0-bfr-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.57955.1 /TIER=ConsEnd /STK=3 /UG=Rn.57955 /UG_TITLE=ESTs BF392993 1398052_at BF387269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387269 /DB_XREF=gi:11372093 /DB_XREF=UI-R-CA1-bbl-e-06-0-UI.s1 /CLONE=UI-R-CA1-bbl-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.59509.1 /TIER=ConsEnd /STK=3 /UG=Rn.59509 /UG_TITLE=ESTs BF387269 1398053_at BF387612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF387612 /DB_XREF=gi:11372436 /DB_XREF=UI-R-CA1-bbs-d-02-0-UI.s1 /CLONE=UI-R-CA1-bbs-d-02-0-UI /FEA=EST /CNT=3 /TID=Rn.60694.1 /TIER=ConsEnd /STK=3 /UG=Rn.60694 /UG_TITLE=ESTs BF387612 1398054_at BF393118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393118 /DB_XREF=gi:11377978 /DB_XREF=UI-R-CA0-bfp-a-02-0-UI.s1 /CLONE=UI-R-CA0-bfp-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.63354.1 /TIER=ConsEnd /STK=3 /UG=Rn.63354 /UG_TITLE=ESTs BF393118 similar to hypothetical protein A530094D01 RGD1306556 288744 XM_001080521 /// XM_222271 1398055_at BF412899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412899 /DB_XREF=gi:11400888 /DB_XREF=UI-R-CA0-boc-b-02-0-UI.s1 /CLONE=UI-R-CA0-boc-b-02-0-UI /FEA=EST /CNT=3 /TID=Rn.62190.1 /TIER=ConsEnd /STK=3 /UG=Rn.62190 /UG_TITLE=ESTs, Weakly similar to INR1 MOUSE INTERFERON-ALPHABETA RECEPTOR ALPHA CHAIN PRECURSOR (M.musculus) BF412899 interferon (alpha, beta and omega) receptor 1 Ifnar1 288264 NM_001105893 0007596 // blood coagulation // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0042110 // T cell activation // not recorded /// 0045351 // type I interferon biosynthetic process // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004904 // interferon receptor activity // not recorded /// 0005515 // protein binding // not recorded 1398056_at BF412924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412924 /DB_XREF=gi:11400913 /DB_XREF=UI-R-CA0-boc-d-07-0-UI.s1 /CLONE=UI-R-CA0-boc-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.62194.1 /TIER=ConsEnd /STK=3 /UG=Rn.62194 /UG_TITLE=ESTs BF412924 1398057_at AI716292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716292 /DB_XREF=gi:5033545 /DB_XREF=UI-R-Y0-aby-b-11-0-UI.s1 /CLONE=UI-R-Y0-aby-b-11-0-UI /FEA=EST /CNT=3 /TID=Rn.26690.1 /TIER=ConsEnd /STK=3 /UG=Rn.26690 /UG_TITLE=ESTs AI716292 1398058_at BE120039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120039 /DB_XREF=gi:8512144 /DB_XREF=UI-R-CA0-bao-h-05-0-UI.s1 /CLONE=UI-R-CA0-bao-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.51856.1 /TIER=ConsEnd /STK=3 /UG=Rn.51856 /UG_TITLE=ESTs BE120039 1398059_at AI501546 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501546 /DB_XREF=gi:4399397 /DB_XREF=UI-R-C2p-sc-d-06-0-UI.s1 /CLONE=UI-R-C2p-sc-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.35516.1 /TIER=ConsEnd /STK=3 /UG=Rn.35516 /UG_TITLE=ESTs AI501546 1398060_at BF386379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386379 /DB_XREF=gi:11371203 /DB_XREF=UI-R-CA1-bbi-g-10-0-UI.s1 /CLONE=UI-R-CA1-bbi-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.61577.1 /TIER=ConsEnd /STK=3 /UG=Rn.61577 /UG_TITLE=ESTs BF386379 rhomboid, veinlet-like 3 (Drosophila) Rhbdl3 287556 NM_001105819 0007165 // signal transduction // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1398061_at BF394224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394224 /DB_XREF=gi:11379088 /DB_XREF=UI-R-CA0-bhc-b-08-0-UI.s1 /CLONE=UI-R-CA0-bhc-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.58247.1 /TIER=ConsEnd /STK=3 /UG=Rn.58247 /UG_TITLE=ESTs BF394224 1398062_at BF404303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404303 /DB_XREF=gi:11392278 /DB_XREF=UI-R-CA1-bjd-i-11-0-UI.s1 /CLONE=UI-R-CA1-bjd-i-11-0-UI /FEA=EST /CNT=3 /TID=Rn.59531.1 /TIER=ConsEnd /STK=3 /UG=Rn.59531 /UG_TITLE=ESTs, Weakly similar to ADP-ribosylation factor 1-directed GTPase activating protein (R.norvegicus) BF404303 small ArfGAP2 Smap2 298500 NM_001100669 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1398063_x_at BI282513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282513 /DB_XREF=gi:14933356 /DB_XREF=UI-R-DD0-bzx-g-05-0-UI.s1 /CLONE=UI-R-DD0-bzx-g-05-0-UI /FEA=EST /CNT=3 /TID=Rn.78016.1 /TIER=ConsEnd /STK=3 /UG=Rn.78016 /UG_TITLE=ESTs, Highly similar to CYTA RAT CYSTATIN ALPHA (R.norvegicus) BI282513 stefin A3 Stfa3 288075 NM_001105877 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004866 // endopeptidase inhibitor activity // inferred from electronic annotation /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1398064_at BF405538 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405538 /DB_XREF=gi:11393513 /DB_XREF=UI-R-CA1-biu-h-04-0-UI.s1 /CLONE=UI-R-CA1-biu-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.59888.1 /TIER=ConsEnd /STK=3 /UG=Rn.59888 /UG_TITLE=ESTs BF405538 1398065_at BF394331 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394331 /DB_XREF=gi:11379195 /DB_XREF=UI-R-CA0-bgr-f-07-0-UI.s1 /CLONE=UI-R-CA0-bgr-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.58265.1 /TIER=ConsEnd /STK=3 /UG=Rn.58265 /UG_TITLE=ESTs BF394331 sine oculis-binding protein homolog-like (Drosophila) Sobpl 309860 NM_001104640 0046872 // metal ion binding // inferred from electronic annotation 1398066_at AI556149 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556149 /DB_XREF=gi:4488512 /DB_XREF=UI-R-C2p-rd-b-08-0-UI.s1 /CLONE=UI-R-C2p-rd-b-08-0-UI /FEA=EST /CNT=3 /TID=Rn.27071.1 /TIER=ConsEnd /STK=3 /UG=Rn.27071 /UG_TITLE=ESTs AI556149 ubiquitin protein ligase E3 component n-recognin 4 Ubr4 313658 NM_001039026 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398067_at BF393939 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393939 /DB_XREF=gi:11378803 /DB_XREF=UI-R-CA0-bgw-h-05-0-UI.s1 /CLONE=UI-R-CA0-bgw-h-05-0-UI /FEA=EST /CNT=3 /TID=Rn.58153.1 /TIER=ConsEnd /STK=3 /UG=Rn.58153 /UG_TITLE=ESTs BF393939 1398068_at BE107742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107742 /DB_XREF=gi:8499847 /DB_XREF=UI-R-CA0-aww-d-06-0-UI.s1 /CLONE=UI-R-CA0-aww-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.63117.1 /TIER=ConsEnd /STK=3 /UG=Rn.63117 /UG_TITLE=ESTs BE107742 similar to transcriptional regulating protein 132 RGD1306119 314306 NM_001169116 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // inferred from electronic annotation 1398069_at BF393848 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393848 /DB_XREF=gi:11378711 /DB_XREF=UI-R-CA0-bgv-f-07-0-UI.s1 /CLONE=UI-R-CA0-bgv-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.51520.1 /TIER=ConsEnd /STK=3 /UG=Rn.51520 /UG_TITLE=ESTs, Moderately similar to 2124399A transposase-like protein (H.sapiens) BF393848 1398070_at BF404998 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404998 /DB_XREF=gi:11392973 /DB_XREF=UI-R-CA1-bio-c-05-0-UI.s1 /CLONE=UI-R-CA1-bio-c-05-0-UI /FEA=EST /CNT=3 /TID=Rn.57459.1 /TIER=ConsEnd /STK=3 /UG=Rn.57459 /UG_TITLE=ESTs BF404998 1398071_at BF405181 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405181 /DB_XREF=gi:11393161 /DB_XREF=UI-R-CA1-biq-h-02-0-UI.s1 /CLONE=UI-R-CA1-biq-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.59314.1 /TIER=ConsEnd /STK=3 /UG=Rn.59314 /UG_TITLE=ESTs BF405181 1398072_at BF409833 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409833 /DB_XREF=gi:11397808 /DB_XREF=UI-R-CA1-bjr-c-12-0-UI.s1 /CLONE=UI-R-CA1-bjr-c-12-0-UI /FEA=EST /CNT=3 /TID=Rn.61499.1 /TIER=ConsEnd /STK=3 /UG=Rn.61499 /UG_TITLE=ESTs BF409833 1398073_at BF400712 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400712 /DB_XREF=gi:11388687 /DB_XREF=UI-R-CA0-bhe-f-03-0-UI.s1 /CLONE=UI-R-CA0-bhe-f-03-0-UI /FEA=EST /CNT=3 /TID=Rn.62252.1 /TIER=ConsEnd /STK=3 /UG=Rn.62252 /UG_TITLE=ESTs, Highly similar to 2022316A neural membrane CD26 peptidase-like protein (R.norvegicus) BF400712 1398074_at BE109876 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109876 /DB_XREF=gi:8501981 /DB_XREF=UI-R-CA0-axi-d-06-0-UI.s1 /CLONE=UI-R-CA0-axi-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.62877.1 /TIER=ConsEnd /STK=3 /UG=Rn.62877 /UG_TITLE=ESTs BE109876 1398075_at BF418304 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418304 /DB_XREF=gi:11406293 /DB_XREF=UI-R-CA0-bmd-d-10-0-UI.s1 /CLONE=UI-R-CA0-bmd-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.63401.1 /TIER=ConsEnd /STK=3 /UG=Rn.63401 /UG_TITLE=ESTs BF418304 1398076_at BF399749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399749 /DB_XREF=gi:11384759 /DB_XREF=UI-R-CA0-bhy-b-01-0-UI.s2 /CLONE=UI-R-CA0-bhy-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.51341.1 /TIER=ConsEnd /STK=3 /UG=Rn.51341 /UG_TITLE=ESTs BF399749 1398077_at BE115751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115751 /DB_XREF=gi:8507856 /DB_XREF=UI-R-CA0-axs-e-01-0-UI.s1 /CLONE=UI-R-CA0-axs-e-01-0-UI /FEA=EST /CNT=3 /TID=Rn.52559.1 /TIER=ConsEnd /STK=3 /UG=Rn.52559 /UG_TITLE=ESTs BE115751 1398078_at BF391102 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391102 /DB_XREF=gi:11375949 /DB_XREF=UI-R-CA1-bcd-c-02-0-UI.s1 /CLONE=UI-R-CA1-bcd-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.57388.1 /TIER=ConsEnd /STK=3 /UG=Rn.57388 /UG_TITLE=ESTs BF391102 1398079_at BF399105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399105 /DB_XREF=gi:11384109 /DB_XREF=UI-R-CA1-bja-d-20-0-UI.s1 /CLONE=UI-R-CA1-bja-d-20-0-UI /FEA=EST /CNT=3 /TID=Rn.59265.1 /TIER=ConsEnd /STK=3 /UG=Rn.59265 /UG_TITLE=ESTs BF399105 Family with sequence similarity 168, member A Fam168a 361614 NM_001108494 1398080_at BF400579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400579 /DB_XREF=gi:11388554 /DB_XREF=UI-R-CA0-bhd-a-09-0-UI.s1 /CLONE=UI-R-CA0-bhd-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.59793.1 /TIER=ConsEnd /STK=3 /UG=Rn.59793 /UG_TITLE=ESTs, Moderately similar to 2210332A protein kinase C-binding protein (R.norvegicus) BF400579 1398081_at BF386129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386129 /DB_XREF=gi:11370953 /DB_XREF=UI-R-CA1-bba-c-11-0-UI.s1 /CLONE=UI-R-CA1-bba-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.60285.1 /TIER=ConsEnd /STK=3 /UG=Rn.60285 /UG_TITLE=ESTs BF386129 1398082_at BF404767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404767 /DB_XREF=gi:11392742 /DB_XREF=UI-R-CA1-bid-d-06-0-UI.s1 /CLONE=UI-R-CA1-bid-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.60495.1 /TIER=ConsEnd /STK=3 /UG=Rn.60495 /UG_TITLE=ESTs BF404767 1398083_at BF412562 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412562 /DB_XREF=gi:11400551 /DB_XREF=UI-R-BT1-bnp-b-09-0-UI.s1 /CLONE=UI-R-BT1-bnp-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.62171.1 /TIER=ConsEnd /STK=3 /UG=Rn.62171 /UG_TITLE=ESTs, Moderately similar to DLL3_RAT DELTA-LIKE PROTEIN 3 PRECURSOR (DROSOPHILA DELTA HOMOLOG 3) (R.norvegicus) BF412562 1398084_at BF419651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419651 /DB_XREF=gi:11407635 /DB_XREF=UI-R-CA0-bpe-f-01-0-UI.s1 /CLONE=UI-R-CA0-bpe-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.63650.1 /TIER=ConsEnd /STK=3 /UG=Rn.63650 /UG_TITLE=ESTs BF419651 1398085_at BF408166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF408166 /DB_XREF=gi:11396141 /DB_XREF=UI-R-BJ2-bra-d-12-0-UI.s1 /CLONE=UI-R-BJ2-bra-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.63425.1 /TIER=ConsEnd /STK=3 /UG=Rn.63425 /UG_TITLE=ESTs BF408166 1398086_at BE103205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103205 /DB_XREF=gi:8495269 /DB_XREF=UI-R-BT1-aqx-d-05-0-UI.s1 /CLONE=UI-R-BT1-aqx-d-05-0-UI /FEA=EST /CNT=3 /TID=Rn.50482.1 /TIER=ConsEnd /STK=3 /UG=Rn.50482 /UG_TITLE=ESTs BE103205 1398087_at BE110617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110617 /DB_XREF=gi:8502722 /DB_XREF=UI-R-BJ1-avu-a-10-0-UI.s1 /CLONE=UI-R-BJ1-avu-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.51912.1 /TIER=ConsEnd /STK=3 /UG=Rn.51912 /UG_TITLE=ESTs BE110617 1398088_at AI764700 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI764700 /DB_XREF=gi:5210635 /DB_XREF=UI-R-Y0-ace-a-09-0-UI.s1 /CLONE=UI-R-Y0-ace-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.26776.1 /TIER=ConsEnd /STK=3 /UG=Rn.26776 /UG_TITLE=ESTs AI764700 1398089_at BF401882 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401882 /DB_XREF=gi:11389857 /DB_XREF=UI-R-CA1-bik-f-06-0-UI.s1 /CLONE=UI-R-CA1-bik-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.59900.1 /TIER=ConsEnd /STK=3 /UG=Rn.59900 /UG_TITLE=ESTs BF401882 1398090_at BI282561 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282561 /DB_XREF=gi:14933453 /DB_XREF=UI-R-DD0-bzy-d-08-0-UI.s1 /CLONE=UI-R-DD0-bzy-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.78301.1 /TIER=ConsEnd /STK=3 /UG=Rn.78301 /UG_TITLE=ESTs BI282561 1398091_at AI575636 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575636 /DB_XREF=gi:4560012 /DB_XREF=UI-R-Y0-vi-d-10-0-UI.s1 /CLONE=UI-R-Y0-vi-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.41498.1 /TIER=ConsEnd /STK=3 /UG=Rn.41498 /UG_TITLE=ESTs AI575636 1398092_at AI555297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555297 /DB_XREF=gi:4487660 /DB_XREF=UI-R-C2p-qq-d-06-0-UI.s1 /CLONE=UI-R-C2p-qq-d-06-0-UI /FEA=EST /CNT=3 /TID=Rn.35236.1 /TIER=ConsEnd /STK=3 /UG=Rn.35236 /UG_TITLE=ESTs AI555297 1398093_at BI290003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290003 /DB_XREF=gi:14948159 /DB_XREF=UI-R-DK0-cfq-f-11-0-UI.s1 /CLONE=UI-R-DK0-cfq-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.79100.1 /TIER=ConsEnd /STK=3 /UG=Rn.79100 /UG_TITLE=ESTs, Weakly similar to NUCLEAR PORE GLYCOPROTEIN P62 (R.norvegicus) BI290003 nucleoporin 62 C-terminal like Nup62cl 300923 XM_001053696 /// XM_217225 0005643 // nuclear pore // inferred from electronic annotation 0017056 // structural constituent of nuclear pore // inferred from electronic annotation 1398094_at BE102480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102480 /DB_XREF=gi:8494579 /DB_XREF=UI-R-BT1-aqn-b-06-0-UI.s1 /CLONE=UI-R-BT1-aqn-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.47761.1 /TIER=ConsEnd /STK=3 /UG=Rn.47761 /UG_TITLE=ESTs BE102480 similar to RIKEN cDNA 4930524B15 RGD1311343 360506 NM_001108270 1398095_at BF398910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398910 /DB_XREF=gi:11383913 /DB_XREF=UI-R-CA1-bja-i-15-0-UI.s1 /CLONE=UI-R-CA1-bja-i-15-0-UI /FEA=EST /CNT=4 /TID=Rn.59200.1 /TIER=ConsEnd /STK=2 /UG=Rn.59200 /UG_TITLE=ESTs, Highly similar to SNX8_HUMAN SORTING NEXIN 8 (H.sapiens) BF398910 1398096_at BF542399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF542399 /DB_XREF=gi:11633506 /DB_XREF=UI-R-C3-sh-a-03-0-UI.r1 /CLONE=UI-R-C3-sh-a-03-0-UI /FEA=EST /CNT=4 /TID=Rn.34712.1 /TIER=ConsEnd /STK=2 /UG=Rn.34712 /UG_TITLE=ESTs, Moderately similar to SUR6 MOUSE SURFEIT LOCUS PROTEIN 6 (M.musculus) BF542399 1398097_at AI412543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412543 /DB_XREF=gi:4256047 /DB_XREF=EST240842 /CLONE=RBRDT38 /FEA=EST /CNT=3 /TID=Rn.43999.1 /TIER=ConsEnd /STK=2 /UG=Rn.43999 /UG_TITLE=ESTs AI412543 1398098_at AW522192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522192 /DB_XREF=gi:7164577 /DB_XREF=UI-R-BO0-agm-e-10-0-UI.s1 /CLONE=UI-R-BO0-agm-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.45321.1 /TIER=ConsEnd /STK=2 /UG=Rn.45321 /UG_TITLE=ESTs AW522192 1398099_at AW527241 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527241 /DB_XREF=gi:7169655 /DB_XREF=UI-R-BO1-ajs-b-01-0-UI.s1 /CLONE=UI-R-BO1-ajs-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.46466.1 /TIER=ConsEnd /STK=2 /UG=Rn.46466 /UG_TITLE=ESTs AW527241 1398100_at AW528677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528677 /DB_XREF=gi:7171091 /DB_XREF=UI-R-BO1-ajo-b-03-0-UI.s1 /CLONE=UI-R-BO1-ajo-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.49136.1 /TIER=ConsEnd /STK=2 /UG=Rn.49136 /UG_TITLE=ESTs AW528677 nuclear receptor coactivator 2 Ncoa2 83724 NM_031822 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0010469 // regulation of receptor activity // not recorded /// 0021549 // cerebellum development // inferred from expression pattern /// 0030518 // steroid hormone receptor signaling pathway // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005791 // rough endoplasmic reticulum // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005874 // microtubule // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0048786 // presynaptic active zone // inferred from direct assay 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from electronic annotation /// 0005102 // receptor binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016922 // ligand-dependent nuclear receptor binding // not recorded /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // not recorded /// 0030374 // ligand-dependent nuclear receptor transcription coactivator activity // inferred from electronic annotation /// 0030375 // thyroid hormone receptor coactivator activity // inferred from electronic annotation /// 0030375 // thyroid hormone receptor coactivator activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0035257 // nuclear hormone receptor binding // inferred from electronic annotation 1398101_at AI236382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236382 /DB_XREF=gi:3829888 /DB_XREF=EST232944 /CLONE=ROVDE95 /FEA=EST /CNT=3 /TID=Rn.37797.1 /TIER=ConsEnd /STK=2 /UG=Rn.37797 /UG_TITLE=ESTs AI236382 1398102_at AI511219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511219 /DB_XREF=gi:4416918 /DB_XREF=UI-R-C3-sg-e-02-0-UI.s1 /CLONE=UI-R-C3-sg-e-02-0-UI /FEA=EST /CNT=3 /TID=Rn.43978.1 /TIER=ConsEnd /STK=2 /UG=Rn.43978 /UG_TITLE=ESTs AI511219 1398103_at AI409359 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409359 /DB_XREF=gi:4252863 /DB_XREF=EST237651 /CLONE=RKIDX40 /FEA=EST /CNT=3 /TID=Rn.42967.1 /TIER=ConsEnd /STK=2 /UG=Rn.42967 /UG_TITLE=ESTs AI409359 1398104_at AW535543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535543 /DB_XREF=gi:7177957 /DB_XREF=UI-R-C4-alx-f-10-0-UI.s1 /CLONE=UI-R-C4-alx-f-10-0-UI /FEA=EST /CNT=3 /TID=Rn.48337.1 /TIER=ConsEnd /STK=2 /UG=Rn.48337 /UG_TITLE=ESTs AW535543 1398105_at AI548809 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548809 /DB_XREF=gi:4466297 /DB_XREF=UI-R-C3-tr-h-10-0-UI.s1 /CLONE=UI-R-C3-tr-h-10-0-UI /FEA=EST /CNT=3 /TID=Rn.43565.1 /TIER=ConsEnd /STK=2 /UG=Rn.43565 /UG_TITLE=ESTs AI548809 1398106_at AW527526 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527526 /DB_XREF=gi:7169940 /DB_XREF=UI-R-BO1-ajv-c-09-0-UI.s1 /CLONE=UI-R-BO1-ajv-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.46563.1 /TIER=ConsEnd /STK=2 /UG=Rn.46563 /UG_TITLE=ESTs AW527526 lysyl-tRNA synthetase Kars 292028 NM_001006967 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006430 // lysyl-tRNA aminoacylation // inferred from direct assay /// 0006430 // lysyl-tRNA aminoacylation // not recorded /// 0006430 // lysyl-tRNA aminoacylation // inferred from electronic annotation /// 0015966 // diadenosine tetraphosphate biosynthetic process // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // not recorded /// 0005829 // cytosol // not recorded /// 0017101 // aminoacyl-tRNA synthetase multienzyme complex // inferred from direct assay 0000049 // tRNA binding // inferred from direct assay /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004824 // lysine-tRNA ligase activity // inferred from direct assay /// 0004824 // lysine-tRNA ligase activity // not recorded /// 0004824 // lysine-tRNA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from direct assay /// 0016874 // ligase activity // inferred from electronic annotation 1398107_at AI385379 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI385379 /DB_XREF=gi:4198161 /DB_XREF=UI-R-C2-mu-h-11-0-UI.s2 /CLONE=UI-R-C2-mu-h-11-0-UI /FEA=EST /CNT=3 /TID=Rn.21921.1 /TIER=ConsEnd /STK=2 /UG=Rn.21921 /UG_TITLE=ESTs, Weakly similar to T15800 hypothetical protein C44B7.7 - Caenorhabditis elegans (C.elegans) AI385379 gamma-glutamyl cyclotransferase Ggct 362368 NM_001108629 1398108_at AW532298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532298 /DB_XREF=gi:7174712 /DB_XREF=UI-R-C4-all-g-06-0-UI.s1 /CLONE=UI-R-C4-all-g-06-0-UI /FEA=EST /CNT=3 /TID=Rn.44978.3 /TIER=ConsEnd /STK=2 /UG=Rn.44978 /UG_TITLE=ESTs, Weakly similar to RHO GDP-DISSOCIATION INHIBITOR 2 (M.musculus) AW532298 Rho GDP dissociation inhibitor (GDI) alpha Arhgdia 360678 NM_001007005 0007266 // Rho protein signal transduction // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // not recorded /// 0032880 // regulation of protein localization // inferred from electronic annotation /// 0032880 // regulation of protein localization // not recorded /// 0050770 // regulation of axonogenesis // not recorded /// 0050771 // negative regulation of axonogenesis // not recorded /// 0050772 // positive regulation of axonogenesis // not recorded /// 0050790 // regulation of catalytic activity // not recorded 0001772 // immunological synapse // inferred from electronic annotation /// 0001772 // immunological synapse // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005094 // Rho GDP-dissociation inhibitor activity // inferred from electronic annotation /// 0005094 // Rho GDP-dissociation inhibitor activity // not recorded /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1398109_at BF405871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405871 /DB_XREF=gi:11393846 /DB_XREF=UI-R-CA1-bii-a-04-0-UI.s1 /CLONE=UI-R-CA1-bii-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.60605.1 /TIER=ConsEnd /STK=2 /UG=Rn.60605 /UG_TITLE=ESTs BF405871 1398110_at AI717612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717612 /DB_XREF=gi:5034916 /DB_XREF=UI-R-Y0-acq-a-06-0-UI.s1 /CLONE=UI-R-Y0-acq-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.26620.1 /TIER=ConsEnd /STK=2 /UG=Rn.26620 /UG_TITLE=ESTs AI717612 1398111_at AI501635 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501635 /DB_XREF=gi:4399486 /DB_XREF=UI-R-C2p-sc-e-11-0-UI.s2 /CLONE=UI-R-C2p-sc-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.35528.1 /TIER=ConsEnd /STK=2 /UG=Rn.35528 /UG_TITLE=ESTs AI501635 hypothetical protein LOC100364843 LOC100364843 100364843 XM_002725069 1398112_at BF401316 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401316 /DB_XREF=gi:11389291 /DB_XREF=UI-R-CA0-bgs-c-06-0-UI.s1 /CLONE=UI-R-CA0-bgs-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.52221.1 /TIER=ConsEnd /STK=2 /UG=Rn.52221 /UG_TITLE=ESTs BF401316 similar to Putative protein C21orf56 homolog LOC499418 499418 NM_001024296 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398113_at AW533329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533329 /DB_XREF=gi:7175743 /DB_XREF=UI-R-BU0-anf-f-02-0-UI.s1 /CLONE=UI-R-BU0-anf-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.49202.1 /TIER=ConsEnd /STK=2 /UG=Rn.49202 /UG_TITLE=ESTs, Weakly similar to GLIAL FIBRILLARY ACIDIC PROTEIN, ASTROCYTE (R.norvegicus) AW533329 Synemin, intermediate filament protein Synm 308709 NM_001134858 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005882 // intermediate filament // inferred from direct assay /// 0005882 // intermediate filament // not recorded /// 0005882 // intermediate filament // inferred from electronic annotation /// 0005912 // adherens junction // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0043034 // costamere // inferred from electronic annotation /// 0043034 // costamere // not recorded /// 0060053 // neurofilament cytoskeleton // inferred from electronic annotation /// 0060053 // neurofilament cytoskeleton // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008307 // structural constituent of muscle // inferred from electronic annotation /// 0008307 // structural constituent of muscle // not recorded /// 0017166 // vinculin binding // inferred from electronic annotation /// 0017166 // vinculin binding // not recorded /// 0019215 // intermediate filament binding // inferred from electronic annotation /// 0019215 // intermediate filament binding // not recorded 1398114_at BF564763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564763 /DB_XREF=gi:11674493 /DB_XREF=UI-R-BU0-amy-e-10-0-UI.r1 /CLONE=UI-R-BU0-amy-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.48045.1 /TIER=ConsEnd /STK=2 /UG=Rn.48045 /UG_TITLE=ESTs BF564763 1398115_at BF393962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393962 /DB_XREF=gi:11378867 /DB_XREF=UI-R-CA0-bgx-g-04-0-UI.s1 /CLONE=UI-R-CA0-bgx-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.51836.1 /TIER=ConsEnd /STK=2 /UG=Rn.51836 /UG_TITLE=ESTs BF393962 1398116_at AI412037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412037 /DB_XREF=gi:4255541 /DB_XREF=EST240331 /CLONE=RKIEH58 /FEA=EST /CNT=3 /TID=Rn.43770.1 /TIER=ConsEnd /STK=2 /UG=Rn.43770 /UG_TITLE=ESTs AI412037 1398117_at AW533235 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW533235 /DB_XREF=gi:7175649 /DB_XREF=UI-R-BU0-ana-d-10-0-UI.s1 /CLONE=UI-R-BU0-ana-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.47044.1 /TIER=ConsEnd /STK=2 /UG=Rn.47044 /UG_TITLE=ESTs AW533235 1398118_at AI555503 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555503 /DB_XREF=gi:4487866 /DB_XREF=UI-R-C2p-qw-c-09-0-UI.s1 /CLONE=UI-R-C2p-qw-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.38989.1 /TIER=ConsEnd /STK=2 /UG=Rn.38989 /UG_TITLE=ESTs AI555503 1398119_at AI556617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556617 /DB_XREF=gi:4488980 /DB_XREF=UI-R-C2p-ri-d-10-0-UI.s1 /CLONE=UI-R-C2p-ri-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.39225.1 /TIER=ConsEnd /STK=2 /UG=Rn.39225 /UG_TITLE=ESTs, Weakly similar to A53715 apomucin precursor - rat (R.norvegicus) AI556617 1398120_at AW531770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531770 /DB_XREF=gi:7174184 /DB_XREF=UI-R-C4-alk-h-02-0-UI.s1 /CLONE=UI-R-C4-alk-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.47810.1 /TIER=ConsEnd /STK=2 /UG=Rn.47810 /UG_TITLE=ESTs AW531770 1398121_at AI408869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408869 /DB_XREF=gi:4252373 /DB_XREF=EST237160 /CLONE=RKIDP80 /FEA=EST /CNT=3 /TID=Rn.44049.1 /TIER=ConsEnd /STK=2 /UG=Rn.44049 /UG_TITLE=ESTs AI408869 1398122_at AW534158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534158 /DB_XREF=gi:7176572 /DB_XREF=UI-R-C4-alp-h-04-0-UI.s1 /CLONE=UI-R-C4-alp-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.47462.1 /TIER=ConsEnd /STK=2 /UG=Rn.47462 /UG_TITLE=ESTs AW534158 1398123_at AW529164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529164 /DB_XREF=gi:7171578 /DB_XREF=UI-R-BO1-ajp-g-04-0-UI.s1 /CLONE=UI-R-BO1-ajp-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.46970.1 /TIER=ConsEnd /STK=2 /UG=Rn.46970 /UG_TITLE=ESTs AW529164 1398124_at AI071356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071356 /DB_XREF=gi:3397571 /DB_XREF=UI-R-C2-mu-d-12-0-UI.s1 /CLONE=UI-R-C2-mu-d-12-0-UI /FEA=EST /CNT=3 /TID=Rn.32046.1 /TIER=ConsEnd /STK=2 /UG=Rn.32046 /UG_TITLE=ESTs AI071356 JAZF zinc finger 1 Jazf1 685879 XM_001065610 /// XM_002726367 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1398125_at BF563203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563203 /DB_XREF=gi:11672933 /DB_XREF=UI-R-BO1-ajg-f-06-0-UI.r1 /CLONE=UI-R-BO1-ajg-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.46398.1 /TIER=ConsEnd /STK=2 /UG=Rn.46398 /UG_TITLE=ESTs, Highly similar to ANK2_HUMAN ANKYRIN 2 (H.sapiens) BF563203 ankyrin 2, neuronal Ank2 362036 XM_001076082 /// XM_342337 0007165 // signal transduction // inferred from electronic annotation /// 0007399 // nervous system development // inferred from expression pattern /// 0030913 // paranodal junction assembly // inferred from expression pattern /// 0051597 // response to methylmercury // inferred from expression pattern 0005856 // cytoskeleton // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0019717 // synaptosome // inferred from direct assay /// 0045121 // membrane raft // inferred from direct assay 0005200 // structural constituent of cytoskeleton // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation 1398126_at AW529975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529975 /DB_XREF=gi:7172389 /DB_XREF=UI-R-C4-alc-e-05-0-UI.s1 /CLONE=UI-R-C4-alc-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.47349.1 /TIER=ConsEnd /STK=2 /UG=Rn.47349 /UG_TITLE=ESTs AW529975 1398127_at BF563124 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563124 /DB_XREF=gi:11672854 /DB_XREF=UI-R-BO1-ajf-b-01-0-UI.r1 /CLONE=UI-R-BO1-ajf-b-01-0-UI /FEA=EST /CNT=3 /TID=Rn.46348.1 /TIER=ConsEnd /STK=2 /UG=Rn.46348 /UG_TITLE=ESTs BF563124 similar to mKIAA0664 protein RGD1307222 303300 XM_001080615 /// XM_220693 0005488 // binding // inferred from electronic annotation 1398128_at AI548626 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548626 /DB_XREF=gi:4466114 /DB_XREF=UI-R-C3-te-d-10-0-UI.s1 /CLONE=UI-R-C3-te-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.43671.1 /TIER=ConsEnd /STK=2 /UG=Rn.43671 /UG_TITLE=ESTs AI548626 1398129_at BF524983 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF524983 /DB_XREF=gi:11632950 /DB_XREF=UI-R-Y0-acu-c-02-0-UI.r1 /CLONE=UI-R-Y0-acu-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.41538.1 /TIER=ConsEnd /STK=2 /UG=Rn.41538 /UG_TITLE=ESTs BF524983 1398130_at AW528265 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528265 /DB_XREF=gi:7170679 /DB_XREF=UI-R-BT1-ajw-e-09-0-UI.s1 /CLONE=UI-R-BT1-ajw-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.49125.1 /TIER=ConsEnd /STK=2 /UG=Rn.49125 /UG_TITLE=ESTs AW528265 1398131_at BE096035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096035 /DB_XREF=gi:8486971 /DB_XREF=UI-R-BU0-apk-f-08-0-UI.s1 /CLONE=UI-R-BU0-apk-f-08-0-UI /FEA=EST /CNT=3 /TID=Rn.47435.1 /TIER=ConsEnd /STK=2 /UG=Rn.47435 /UG_TITLE=ESTs BE096035 1398132_at AW527144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527144 /DB_XREF=gi:7169558 /DB_XREF=UI-R-BO1-ajm-a-08-0-UI.s1 /CLONE=UI-R-BO1-ajm-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.46203.1 /TIER=ConsEnd /STK=2 /UG=Rn.46203 /UG_TITLE=ESTs AW527144 1398133_at AI548652 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI548652 /DB_XREF=gi:4466140 /DB_XREF=UI-R-C3-tp-a-06-0-UI.s1 /CLONE=UI-R-C3-tp-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.43039.1 /TIER=ConsEnd /STK=2 /UG=Rn.43039 /UG_TITLE=ESTs AI548652 1398134_at BF523421 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF523421 /DB_XREF=gi:11631388 /DB_XREF=UI-R-Y0-vn-c-02-0-UI.r1 /CLONE=UI-R-Y0-vn-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.38916.1 /TIER=ConsEnd /STK=2 /UG=Rn.38916 /UG_TITLE=ESTs, Weakly similar to TC17 RAT TRANSCRIPTION FACTOR 17 (R.norvegicus) BF523421 zinc finger protein 90 Zfp90 498945 NM_001025765 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006508 // proteolysis // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398135_at AI511042 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI511042 /DB_XREF=gi:4416741 /DB_XREF=UI-R-C2p-oc-f-02-0-UI.s1 /CLONE=UI-R-C2p-oc-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.34611.1 /TIER=ConsEnd /STK=2 /UG=Rn.34611 /UG_TITLE=ESTs AI511042 1398136_at AI716403 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716403 /DB_XREF=gi:5033656 /DB_XREF=UI-R-Y0-abg-f-01-0-UI.s1 /CLONE=UI-R-Y0-abg-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.41014.1 /TIER=ConsEnd /STK=2 /UG=Rn.41014 /UG_TITLE=ESTs AI716403 similar to RIKEN cDNA 0610039J04 RGD1562218 292100 NM_001034919 1398137_at AI500919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI500919 /DB_XREF=gi:4398770 /DB_XREF=UI-R-C2p-rn-d-09-0-UI.s1 /CLONE=UI-R-C2p-rn-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.38176.1 /TIER=ConsEnd /STK=2 /UG=Rn.38176 /UG_TITLE=ESTs AI500919 1398138_at AI717693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717693 /DB_XREF=gi:5034907 /DB_XREF=UI-R-Y0-ack-h-06-0-UI.s1 /CLONE=UI-R-Y0-ack-h-06-0-UI /FEA=EST /CNT=3 /TID=Rn.41364.1 /TIER=ConsEnd /STK=2 /UG=Rn.41364 /UG_TITLE=ESTs AI717693 1398139_at AW528104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528104 /DB_XREF=gi:7170518 /DB_XREF=UI-R-BT1-akh-g-10-0-UI.s1 /CLONE=UI-R-BT1-akh-g-10-0-UI /FEA=EST /CNT=3 /TID=Rn.46772.1 /TIER=ConsEnd /STK=2 /UG=Rn.46772 /UG_TITLE=ESTs AW528104 hypothetical LOC315072 RGD1311993 315072 XM_001069194 /// XM_235415 0005794 // Golgi apparatus // not recorded 0005488 // binding // inferred from electronic annotation 1398140_at BF416372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF416372 /DB_XREF=gi:11404361 /DB_XREF=UI-R-CA0-bkj-h-01-0-UI.s1 /CLONE=UI-R-CA0-bkj-h-01-0-UI /FEA=EST /CNT=3 /TID=Rn.64319.1 /TIER=ConsEnd /STK=2 /UG=Rn.64319 /UG_TITLE=ESTs BF416372 Nuclear receptor co-repressor 2 Ncor2 360801 NM_001108334 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001701 // in utero embryonic development // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0021537 // telencephalon development // not recorded /// 0021846 // cell proliferation in forebrain // not recorded /// 0030900 // forebrain development // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0042593 // glucose homeostasis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045599 // negative regulation of fat cell differentiation // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0050872 // white fat cell differentiation // not recorded /// 0060206 // estrous cycle phase // inferred from expression pattern 0000118 // histone deacetylase complex // not recorded /// 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0016604 // nuclear body // not recorded /// 0017053 // transcriptional repressor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003714 // transcription corepressor activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005112 // Notch binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016566 // specific transcriptional repressor activity // not recorded /// 0042826 // histone deacetylase binding // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0047485 // protein N-terminus binding // not recorded 1398141_at AI556291 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556291 /DB_XREF=gi:4488654 /DB_XREF=UI-R-C2p-rk-c-02-0-UI.s1 /CLONE=UI-R-C2p-rk-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.38599.1 /TIER=ConsEnd /STK=2 /UG=Rn.38599 /UG_TITLE=ESTs AI556291 scavenger receptor cysteine rich domain containing, group B (4 domains) Srcrb4d 304401 XM_001077242 /// XM_002724812 /// XM_002727956 /// XM_222076 0016020 // membrane // inferred from electronic annotation 0005044 // scavenger receptor activity // inferred from electronic annotation 1398142_at AI763899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI763899 /DB_XREF=gi:5209834 /DB_XREF=UI-R-Y0-act-d-07-0-UI.s1 /CLONE=UI-R-Y0-act-d-07-0-UI /FEA=EST /CNT=3 /TID=Rn.41718.1 /TIER=ConsEnd /STK=2 /UG=Rn.41718 /UG_TITLE=ESTs AI763899 1398143_at BF414789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414789 /DB_XREF=gi:11402783 /DB_XREF=UI-R-BJ2-bos-b-05-0-UI.s1 /CLONE=UI-R-BJ2-bos-b-05-0-UI /FEA=EST /CNT=3 /TID=Rn.62602.1 /TIER=ConsEnd /STK=2 /UG=Rn.62602 /UG_TITLE=ESTs, Weakly similar to CAMP-DEPENDENT PROTEIN KINASE, ALPHA-CATALYTIC SUBUNIT (R.norvegicus) BF414789 protein kinase, X-linked Prkx 501563 NM_001033963 0006468 // protein phosphorylation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1398144_at BF406256 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406256 /DB_XREF=gi:11394231 /DB_XREF=UI-R-CA1-bjf-m-14-0-UI.s1 /CLONE=UI-R-CA1-bjf-m-14-0-UI /FEA=EST /CNT=2 /TID=Rn.60906.1 /TIER=ConsEnd /STK=2 /UG=Rn.60906 /UG_TITLE=ESTs BF406256 1398145_at BF406348 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406348 /DB_XREF=gi:11394323 /DB_XREF=UI-R-CA1-bjf-p-07-0-UI.s1 /CLONE=UI-R-CA1-bjf-p-07-0-UI /FEA=EST /CNT=2 /TID=Rn.60949.1 /TIER=ConsEnd /STK=2 /UG=Rn.60949 /UG_TITLE=ESTs BF406348 1398146_at BF404564 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404564 /DB_XREF=gi:11392504 /DB_XREF=UI-R-CA1-big-e-06-0-UI.s1 /CLONE=UI-R-CA1-big-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.60536.1 /TIER=ConsEnd /STK=2 /UG=Rn.60536 /UG_TITLE=ESTs BF404564 1398147_at BF404483 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404483 /DB_XREF=gi:11392458 /DB_XREF=UI-R-CA1-bif-h-06-0-UI.s1 /CLONE=UI-R-CA1-bif-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.59475.1 /TIER=ConsEnd /STK=2 /UG=Rn.59475 /UG_TITLE=ESTs, Weakly similar to GPT MOUSE UDP-N-ACETYLGLUCOSAMINE--DOLICHYL-PHOSPHATE N-ACETYLGLUCOSAMINEPHOSPHOTRANSFERASE (M.musculus) BF404483 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) Dpagt1 300668 NM_199388 0006047 // UDP-N-acetylglucosamine metabolic process // inferred from direct assay /// 0006487 // protein N-linked glycosylation // not recorded /// 0006487 // protein N-linked glycosylation // inferred from electronic annotation /// 0006488 // dolichol-linked oligosaccharide biosynthetic process // inferred from direct assay /// 0008152 // metabolic process // not recorded /// 0019348 // dolichol metabolic process // inferred from direct assay /// 0019408 // dolichol biosynthetic process // inferred from electronic annotation /// 0019408 // dolichol biosynthetic process // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003975 // UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity // inferred from direct assay /// 0003975 // UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity // not recorded /// 0003975 // UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity // non-traceable author statement /// 0003975 // UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity // inferred from electronic annotation /// 0008963 // phospho-N-acetylmuramoyl-pentapeptide-transferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1398148_at BF406137 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406137 /DB_XREF=gi:11394112 /DB_XREF=UI-R-CA1-bjf-c-19-0-UI.s1 /CLONE=UI-R-CA1-bjf-c-19-0-UI /FEA=EST /CNT=2 /TID=Rn.60845.1 /TIER=ConsEnd /STK=2 /UG=Rn.60845 /UG_TITLE=ESTs BF406137 1398149_at BF402393 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402393 /DB_XREF=gi:11390368 /DB_XREF=UI-R-CA0-bhn-g-01-0-UI.s1 /CLONE=UI-R-CA0-bhn-g-01-0-UI /FEA=EST /CNT=2 /TID=Rn.58255.1 /TIER=ConsEnd /STK=2 /UG=Rn.58255 /UG_TITLE=ESTs BF402393 sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A Sema5a 310207 NM_001107659 0001569 // patterning of blood vessels // not recorded /// 0007165 // signal transduction // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0048754 // branching morphogenesis of a tube // not recorded 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0008046 // axon guidance receptor activity // not recorded 1398150_at BF404612 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404612 /DB_XREF=gi:11392587 /DB_XREF=UI-R-CA1-bih-e-07-0-UI.s1 /CLONE=UI-R-CA1-bih-e-07-0-UI /FEA=EST /CNT=2 /TID=Rn.59957.1 /TIER=ConsEnd /STK=2 /UG=Rn.59957 /UG_TITLE=ESTs, Weakly similar to S66665 nuclear protein Hep27 (H.sapiens) BF404612 1398151_at BF394120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394120 /DB_XREF=gi:11378984 /DB_XREF=UI-R-CA0-bgz-g-02-0-UI.s1 /CLONE=UI-R-CA0-bgz-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.58217.1 /TIER=ConsEnd /STK=2 /UG=Rn.58217 /UG_TITLE=ESTs BF394120 1398152_at BF393832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393832 /DB_XREF=gi:11378695 /DB_XREF=UI-R-CA0-bgv-e-03-0-UI.s1 /CLONE=UI-R-CA0-bgv-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.58141.1 /TIER=ConsEnd /STK=2 /UG=Rn.58141 /UG_TITLE=ESTs BF393832 1398153_at BF400866 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400866 /DB_XREF=gi:11388841 /DB_XREF=UI-R-CA0-bhg-g-06-0-UI.s1 /CLONE=UI-R-CA0-bhg-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.59658.1 /TIER=ConsEnd /STK=2 /UG=Rn.59658 /UG_TITLE=ESTs BF400866 1398154_at BF406175 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406175 /DB_XREF=gi:11394150 /DB_XREF=UI-R-CA1-bjf-m-07-0-UI.s1 /CLONE=UI-R-CA1-bjf-m-07-0-UI /FEA=EST /CNT=2 /TID=Rn.60915.1 /TIER=ConsEnd /STK=2 /UG=Rn.60915 /UG_TITLE=ESTs BF406175 1398155_at BF394133 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394133 /DB_XREF=gi:11378997 /DB_XREF=UI-R-CA0-bha-a-04-0-UI.s1 /CLONE=UI-R-CA0-bha-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.58221.1 /TIER=ConsEnd /STK=2 /UG=Rn.58221 /UG_TITLE=ESTs BF394133 1398156_at BF396516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396516 /DB_XREF=gi:11381490 /DB_XREF=UI-R-BS2-bdz-a-09-0-UI.s1 /CLONE=UI-R-BS2-bdz-a-09-0-UI /FEA=EST /CNT=2 /TID=Rn.58616.1 /TIER=ConsEnd /STK=2 /UG=Rn.58616 /UG_TITLE=ESTs BF396516 1398157_at BF404420 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404420 /DB_XREF=gi:11392395 /DB_XREF=UI-R-CA1-bif-b-02-0-UI.s1 /CLONE=UI-R-CA1-bif-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.60494.1 /TIER=ConsEnd /STK=2 /UG=Rn.60494 /UG_TITLE=ESTs BF404420 1398158_at BF405012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405012 /DB_XREF=gi:11392987 /DB_XREF=UI-R-CA1-bio-d-12-0-UI.s1 /CLONE=UI-R-CA1-bio-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.60643.1 /TIER=ConsEnd /STK=2 /UG=Rn.60643 /UG_TITLE=ESTs BF405012 1398159_at BM389817 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389817 /DB_XREF=gi:18189870 /DB_XREF=UI-R-CN1-cjp-j-07-0-UI.s1 /CLONE=UI-R-CN1-cjp-j-07-0-UI /FEA=EST /CNT=2 /TID=Rn.82321.1 /TIER=ConsEnd /STK=2 /UG=Rn.82321 /UG_TITLE=ESTs BM389817 Kruppel-like factor 5 Klf5 84410 NM_053394 0001525 // angiogenesis // not recorded /// 0001525 // angiogenesis // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from expression pattern /// 0030033 // microvillus assembly // not recorded /// 0030033 // microvillus assembly // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1398160_at BF413168 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413168 /DB_XREF=gi:11401157 /DB_XREF=UI-R-BT1-bnx-e-05-0-UI.s1 /CLONE=UI-R-BT1-bnx-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.62267.1 /TIER=ConsEnd /STK=2 /UG=Rn.62267 /UG_TITLE=ESTs BF413168 1398161_at BF405189 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405189 /DB_XREF=gi:11393164 /DB_XREF=UI-R-CA1-biq-h-05-0-UI.s1 /CLONE=UI-R-CA1-biq-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.60681.1 /TIER=ConsEnd /STK=2 /UG=Rn.60681 /UG_TITLE=ESTs, Weakly similar to T46289 hypothetical protein DKFZp434A1010.1 (H.sapiens) BF405189 1398162_at BF400617 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400617 /DB_XREF=gi:11388592 /DB_XREF=UI-R-CA0-bhd-e-05-0-UI.s1 /CLONE=UI-R-CA0-bhd-e-05-0-UI /FEA=EST /CNT=2 /TID=Rn.59597.1 /TIER=ConsEnd /STK=2 /UG=Rn.59597 /UG_TITLE=ESTs BF400617 1398163_at BF406167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406167 /DB_XREF=gi:11394142 /DB_XREF=UI-R-CA1-bjf-k-07-0-UI.s1 /CLONE=UI-R-CA1-bjf-k-07-0-UI /FEA=EST /CNT=2 /TID=Rn.60914.1 /TIER=ConsEnd /STK=2 /UG=Rn.60914 /UG_TITLE=ESTs BF406167 1398164_at BF406182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406182 /DB_XREF=gi:11394157 /DB_XREF=UI-R-CA1-bjf-m-23-0-UI.s1 /CLONE=UI-R-CA1-bjf-m-23-0-UI /FEA=EST /CNT=2 /TID=Rn.60917.1 /TIER=ConsEnd /STK=2 /UG=Rn.60917 /UG_TITLE=ESTs BF406182 1398165_at BF399452 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399452 /DB_XREF=gi:11384460 /DB_XREF=UI-R-CA1-bjb-l-11-0-UI.s1 /CLONE=UI-R-CA1-bjb-l-11-0-UI /FEA=EST /CNT=2 /TID=Rn.59381.1 /TIER=ConsEnd /STK=2 /UG=Rn.59381 /UG_TITLE=ESTs BF399452 1398166_at BF401600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401600 /DB_XREF=gi:11389575 /DB_XREF=UI-R-CA0-bgm-e-06-0-UI.s1 /CLONE=UI-R-CA0-bgm-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.59823.1 /TIER=ConsEnd /STK=2 /UG=Rn.59823 /UG_TITLE=ESTs BF401600 RNA binding motif protein 44 Rbm44 501183 XM_001066845 /// XM_576610 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1398167_at BE107816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107816 /DB_XREF=gi:8499921 /DB_XREF=UI-R-CA0-awx-c-01-0-UI.s1 /CLONE=UI-R-CA0-awx-c-01-0-UI /FEA=EST /CNT=2 /TID=Rn.51298.1 /TIER=ConsEnd /STK=2 /UG=Rn.51298 /UG_TITLE=ESTs BE107816 1398168_at BF401672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401672 /DB_XREF=gi:11389647 /DB_XREF=UI-R-CA0-bgn-c-12-0-UI.s1 /CLONE=UI-R-CA0-bgn-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.59735.1 /TIER=ConsEnd /STK=2 /UG=Rn.59735 /UG_TITLE=ESTs BF401672 1398169_at BF405940 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405940 /DB_XREF=gi:11393915 /DB_XREF=UI-R-CA1-bii-g-09-0-UI.s1 /CLONE=UI-R-CA1-bii-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.60863.1 /TIER=ConsEnd /STK=2 /UG=Rn.60863 /UG_TITLE=ESTs BF405940 1398170_at BE119687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119687 /DB_XREF=gi:8511792 /DB_XREF=UI-R-CA0-baz-g-06-0-UI.s1 /CLONE=UI-R-CA0-baz-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.53322.2 /TIER=ConsEnd /STK=2 /UG=Rn.53322 /UG_TITLE=ESTs, Highly similar to FATP RAT LONG-CHAIN FATTY ACID TRANSPORT PROTEIN (R.norvegicus) BE119687 1398171_at BF406300 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406300 /DB_XREF=gi:11394275 /DB_XREF=UI-R-CA1-bjf-f-17-0-UI.s1 /CLONE=UI-R-CA1-bjf-f-17-0-UI /FEA=EST /CNT=2 /TID=Rn.60923.1 /TIER=ConsEnd /STK=2 /UG=Rn.60923 /UG_TITLE=ESTs, Weakly similar to PN0109 keratin-like protein - rat (R.norvegicus) BF406300 gametogenetin Ggn 292765 NM_001013065 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007276 // gamete generation // inferred from electronic annotation /// 0007276 // gamete generation // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // not recorded 1398172_at BF400727 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400727 /DB_XREF=gi:11388702 /DB_XREF=UI-R-CA0-bhe-g-08-0-UI.s1 /CLONE=UI-R-CA0-bhe-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.58241.1 /TIER=ConsEnd /STK=2 /UG=Rn.58241 /UG_TITLE=ESTs BF400727 1398173_at BF393056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393056 /DB_XREF=gi:11377916 /DB_XREF=UI-R-CA0-bgp-g-04-0-UI.s1 /CLONE=UI-R-CA0-bgp-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.57973.1 /TIER=ConsEnd /STK=2 /UG=Rn.57973 /UG_TITLE=ESTs BF393056 1398174_at BE114216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114216 /DB_XREF=gi:8506321 /DB_XREF=UI-R-CA0-axo-d-12-0-UI.s1 /CLONE=UI-R-CA0-axo-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.52332.1 /TIER=ConsEnd /STK=2 /UG=Rn.52332 /UG_TITLE=ESTs, Highly similar to methyl CpG binding protein 2 (Rattus norvegicus) (R.norvegicus) BE114216 methyl CpG binding protein 2 Mecp2 29386 NM_022673 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0001662 // behavioral fear response // inferred from electronic annotation /// 0001662 // behavioral fear response // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0001964 // startle response // inferred from electronic annotation /// 0001964 // startle response // not recorded /// 0001976 // neurological system process involved in regulation of systemic arterial blood pressure // inferred from electronic annotation /// 0001976 // neurological system process involved in regulation of systemic arterial blood pressure // not recorded /// 0002087 // regulation of respiratory gaseous exchange by neurological system process // inferred from electronic annotation /// 0002087 // regulation of respiratory gaseous exchange by neurological system process // not recorded /// 0006020 // inositol metabolic process // inferred from electronic annotation /// 0006020 // inositol metabolic process // not recorded /// 0006122 // mitochondrial electron transport, ubiquinol to cytochrome c // inferred from electronic annotation /// 0006122 // mitochondrial electron transport, ubiquinol to cytochrome c // not recorded /// 0006342 // chromatin silencing // inferred from electronic annotation /// 0006342 // chromatin silencing // not recorded /// 0006349 // regulation of gene expression by genetic imprinting // inferred from electronic annotation /// 0006349 // regulation of gene expression by genetic imprinting // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006541 // glutamine metabolic process // inferred from electronic annotation /// 0006541 // glutamine metabolic process // not recorded /// 0006576 // cellular biogenic amine metabolic process // inferred from electronic annotation /// 0006576 // cellular biogenic amine metabolic process // not recorded /// 0006950 // response to stress // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007268 // synaptic transmission // not recorded /// 0007416 // synapse assembly // not recorded /// 0007416 // synapse assembly // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // not recorded /// 0007612 // learning // inferred from electronic annotation /// 0007612 // learning // not recorded /// 0007613 // memory // not recorded /// 0007613 // memory // inferred from electronic annotation /// 0007616 // long-term memory // inferred from electronic annotation /// 0007616 // long-term memory // not recorded /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0008211 // glucocorticoid metabolic process // inferred from electronic annotation /// 0008211 // glucocorticoid metabolic process // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008344 // adult locomotory behavior // inferred from electronic annotation /// 0008344 // adult locomotory behavior // not recorded /// 0008542 // visual learning // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0009405 // pathogenesis // inferred from electronic annotation /// 0009405 // pathogenesis // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0016358 // dendrite development // inferred from electronic annotation /// 0016358 // dendrite development // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016571 // histone methylation // not recorded /// 0016571 // histone methylation // inferred from electronic annotation /// 0016573 // histone acetylation // not recorded /// 0016573 // histone acetylation // inferred from electronic annotation /// 0019230 // proprioception // inferred from electronic annotation /// 0019230 // proprioception // not recorded /// 0019233 // sensory perception of pain // inferred from electronic annotation /// 0019233 // sensory perception of pain // not recorded /// 0021549 // cerebellum development // inferred from electronic annotation /// 0021549 // cerebellum development // not recorded /// 0021591 // ventricular system development // inferred from electronic annotation /// 0021591 // ventricular system development // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0031061 // negative regulation of histone methylation // inferred from electronic annotation /// 0031061 // negative regulation of histone methylation // not recorded /// 0031175 // neuron projection development // not recorded /// 0031175 // neuron projection development // inferred from electronic annotation /// 0032048 // cardiolipin metabolic process // inferred from electronic annotation /// 0032048 // cardiolipin metabolic process // not recorded /// 0035067 // negative regulation of histone acetylation // inferred from electronic annotation /// 0035067 // negative regulation of histone acetylation // not recorded /// 0035176 // social behavior // inferred from electronic annotation /// 0035176 // social behavior // not recorded /// 0040029 // regulation of gene expression, epigenetic // not recorded /// 0040029 // regulation of gene expression, epigenetic // inferred from electronic annotation /// 0042551 // neuron maturation // inferred from electronic annotation /// 0042551 // neuron maturation // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from direct assay /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0046470 // phosphatidylcholine metabolic process // inferred from electronic annotation /// 0046470 // phosphatidylcholine metabolic process // not recorded /// 0048167 // regulation of synaptic plasticity // not recorded /// 0048167 // regulation of synaptic plasticity // inferred from electronic annotation /// 0050432 // catecholamine secretion // inferred from electronic annotation /// 0050432 // catecholamine secretion // not recorded /// 0050884 // neuromuscular process controlling posture // not recorded /// 0050884 // neuromuscular process controlling posture // inferred from electronic annotation /// 0050905 // neuromuscular process // not recorded /// 0050905 // neuromuscular process // inferred from electronic annotation /// 0051965 // positive regulation of synaptogenesis // inferred from electronic annotation /// 0051965 // positive regulation of synaptogenesis // not recorded /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded /// 0060291 // long-term synaptic potentiation // inferred from electronic annotation /// 0060291 // long-term synaptic potentiation // not recorded 0000790 // nuclear chromatin // inferred from direct assay /// 0000792 // heterochromatin // inferred from electronic annotation /// 0000792 // heterochromatin // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0000400 // four-way junction DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003729 // mRNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008327 // methyl-CpG binding // inferred from direct assay /// 0008327 // methyl-CpG binding // not recorded /// 0008327 // methyl-CpG binding // inferred from electronic annotation /// 0010385 // double-stranded methylated DNA binding // inferred from direct assay /// 0010385 // double-stranded methylated DNA binding // not recorded /// 0010385 // double-stranded methylated DNA binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from direct assay /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0019904 // protein domain specific binding // not recorded /// 0031490 // chromatin DNA binding // inferred from direct assay /// 0035197 // siRNA binding // inferred from electronic annotation /// 0035197 // siRNA binding // not recorded /// 0045322 // unmethylated CpG binding // inferred from direct assay /// 0047485 // protein N-terminus binding // not recorded 1398175_at BE120388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120388 /DB_XREF=gi:8512493 /DB_XREF=UI-R-CA0-baq-g-12-0-UI.s1 /CLONE=UI-R-CA0-baq-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.51322.1 /TIER=ConsEnd /STK=2 /UG=Rn.51322 /UG_TITLE=ESTs BE120388 1398176_at BF414017 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414017 /DB_XREF=gi:11402006 /DB_XREF=UI-R-BJ2-bol-d-11-0-UI.s1 /CLONE=UI-R-BJ2-bol-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.62502.1 /TIER=ConsEnd /STK=2 /UG=Rn.62502 /UG_TITLE=ESTs BF414017 1398177_at BF400770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400770 /DB_XREF=gi:11388750 /DB_XREF=UI-R-CA0-bhf-d-12-0-UI.s1 /CLONE=UI-R-CA0-bhf-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.59641.1 /TIER=ConsEnd /STK=2 /UG=Rn.59641 /UG_TITLE=ESTs, Weakly similar to CD4.4.p (Caenorhabditis elegans) (C.elegans) BF400770 vacuolar protein sorting 37 homolog C (S. cerevisiae) Vps37c 308178 NM_001107463 1398178_at BF404392 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404392 /DB_XREF=gi:11392367 /DB_XREF=UI-R-CA1-bie-f-10-0-UI.s1 /CLONE=UI-R-CA1-bie-f-10-0-UI /FEA=EST /CNT=2 /TID=Rn.60485.1 /TIER=ConsEnd /STK=2 /UG=Rn.60485 /UG_TITLE=ESTs BF404392 1398179_at BF393841 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393841 /DB_XREF=gi:11378704 /DB_XREF=UI-R-CA0-bgv-e-12-0-UI.s1 /CLONE=UI-R-CA0-bgv-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.58144.1 /TIER=ConsEnd /STK=2 /UG=Rn.58144 /UG_TITLE=ESTs BF393841 1398180_at BF567681 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF567681 /DB_XREF=gi:11677411 /DB_XREF=UI-R-BO0-agv-c-07-0-UI.r1 /CLONE=UI-R-BO0-agv-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.45395.1 /TIER=ConsEnd /STK=2 /UG=Rn.45395 /UG_TITLE=ESTs BF567681 1398181_at BF394267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394267 /DB_XREF=gi:11379131 /DB_XREF=UI-R-CA0-bhc-h-05-0-UI.s1 /CLONE=UI-R-CA0-bhc-h-05-0-UI /FEA=EST /CNT=2 /TID=Rn.58166.1 /TIER=ConsEnd /STK=2 /UG=Rn.58166 /UG_TITLE=ESTs BF394267 1398182_at BF411782 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411782 /DB_XREF=gi:11399771 /DB_XREF=UI-R-BT1-bmw-a-12-0-UI.s1 /CLONE=UI-R-BT1-bmw-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.47364.1 /TIER=ConsEnd /STK=2 /UG=Rn.47364 /UG_TITLE=ESTs BF411782 1398183_at BE101139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101139 /DB_XREF=gi:8493048 /DB_XREF=UI-R-BJ1-auh-e-09-0-UI.s1 /CLONE=UI-R-BJ1-auh-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.50034.1 /TIER=ConsEnd /STK=2 /UG=Rn.50034 /UG_TITLE=ESTs, Moderately similar to B56755 cytochrome P450 2C24, splice form p9 - rat (R.norvegicus) BE101139 1398184_at BI294805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294805 /DB_XREF=gi:14957617 /DB_XREF=UI-R-DK0-cec-d-03-0-UI.s1 /CLONE=UI-R-DK0-cec-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.79422.1 /TIER=ConsEnd /STK=2 /UG=Rn.79422 /UG_TITLE=ESTs BI294805 1398185_at BF410350 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410350 /DB_XREF=gi:11398325 /DB_XREF=UI-R-CA1-bjw-d-12-0-UI.s1 /CLONE=UI-R-CA1-bjw-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.61670.1 /TIER=ConsEnd /STK=2 /UG=Rn.61670 /UG_TITLE=ESTs BF410350 microfibrillar-associated protein 3-like Mfap3l 306424 NM_001012049 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1398186_at BF395797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395797 /DB_XREF=gi:11380768 /DB_XREF=UI-R-BT1-bkc-d-08-0-UI.s1 /CLONE=UI-R-BT1-bkc-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.65281.1 /TIER=ConsEnd /STK=2 /UG=Rn.65281 /UG_TITLE=ESTs BF395797 1398187_at BM391924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391924 /DB_XREF=gi:18191977 /DB_XREF=UI-R-DM1-ckc-h-03-0-UI.s2 /CLONE=UI-R-DM1-ckc-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.82658.1 /TIER=ConsEnd /STK=2 /UG=Rn.82658 /UG_TITLE=ESTs BM391924 1398188_at BE121116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121116 /DB_XREF=gi:8513221 /DB_XREF=UI-R-CA0-bau-c-03-0-UI.s1 /CLONE=UI-R-CA0-bau-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.51218.1 /TIER=ConsEnd /STK=2 /UG=Rn.51218 /UG_TITLE=ESTs BE121116 1398189_at BF414422 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414422 /DB_XREF=gi:11402406 /DB_XREF=UI-R-CA0-bpa-b-12-0-UI.s1 /CLONE=UI-R-CA0-bpa-b-12-0-UI /FEA=EST /CNT=2 /TID=Rn.62531.1 /TIER=ConsEnd /STK=2 /UG=Rn.62531 /UG_TITLE=ESTs BF414422 1398190_at BF564894 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF564894 /DB_XREF=gi:11674624 /DB_XREF=UI-R-BU0-amz-h-08-0-UI.r1 /CLONE=UI-R-BU0-amz-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.48064.1 /TIER=ConsEnd /STK=2 /UG=Rn.48064 /UG_TITLE=ESTs BF564894 1398191_at BF403831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403831 /DB_XREF=gi:11391806 /DB_XREF=UI-R-CA1-bix-h-03-0-UI.s1 /CLONE=UI-R-CA1-bix-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.60303.1 /TIER=ConsEnd /STK=2 /UG=Rn.60303 /UG_TITLE=ESTs BF403831 1398192_at BF402390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402390 /DB_XREF=gi:11390365 /DB_XREF=UI-R-CA0-bhn-f-09-0-UI.s1 /CLONE=UI-R-CA0-bhn-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.53811.1 /TIER=ConsEnd /STK=2 /UG=Rn.53811 /UG_TITLE=ESTs BF402390 1398193_at BE114283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114283 /DB_XREF=gi:8506388 /DB_XREF=UI-R-BJ1-awk-d-08-0-UI.s1 /CLONE=UI-R-BJ1-awk-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.52498.1 /TIER=ConsEnd /STK=2 /UG=Rn.52498 /UG_TITLE=ESTs BE114283 1398194_at BF405720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405720 /DB_XREF=gi:11393695 /DB_XREF=UI-R-CA1-bje-c-03-0-UI.s1 /CLONE=UI-R-CA1-bje-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.60329.1 /TIER=ConsEnd /STK=2 /UG=Rn.60329 /UG_TITLE=ESTs BF405720 1398195_at BF397286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397286 /DB_XREF=gi:11382274 /DB_XREF=UI-R-BS2-bek-f-06-0-UI.s1 /CLONE=UI-R-BS2-bek-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.58791.1 /TIER=ConsEnd /STK=2 /UG=Rn.58791 /UG_TITLE=ESTs BF397286 1398196_at BE120383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120383 /DB_XREF=gi:8512488 /DB_XREF=UI-R-CA0-baq-g-07-0-UI.s1 /CLONE=UI-R-CA0-baq-g-07-0-UI /FEA=EST /CNT=2 /TID=Rn.62195.1 /TIER=ConsEnd /STK=2 /UG=Rn.62195 /UG_TITLE=ESTs BE120383 1398197_at BF390021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390021 /DB_XREF=gi:11374863 /DB_XREF=UI-R-BS2-bdr-d-04-0-UI.s1 /CLONE=UI-R-BS2-bdr-d-04-0-UI /FEA=EST /CNT=2 /TID=Rn.58851.1 /TIER=ConsEnd /STK=2 /UG=Rn.58851 /UG_TITLE=ESTs BF390021 1398198_at BF400669 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400669 /DB_XREF=gi:11388644 /DB_XREF=UI-R-CA0-bhe-b-01-0-UI.s1 /CLONE=UI-R-CA0-bhe-b-01-0-UI /FEA=EST /CNT=2 /TID=Rn.59615.1 /TIER=ConsEnd /STK=2 /UG=Rn.59615 /UG_TITLE=ESTs BF400669 1398199_at BF404485 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404485 /DB_XREF=gi:11392460 /DB_XREF=UI-R-CA1-bif-h-08-0-UI.s1 /CLONE=UI-R-CA1-bif-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.60522.1 /TIER=ConsEnd /STK=2 /UG=Rn.60522 /UG_TITLE=ESTs BF404485 1398200_at BF392865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392865 /DB_XREF=gi:11377724 /DB_XREF=UI-R-CA0-bfq-b-06-0-UI.s1 /CLONE=UI-R-CA0-bfq-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.57928.1 /TIER=ConsEnd /STK=2 /UG=Rn.57928 /UG_TITLE=ESTs BF392865 1398201_at BF400860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400860 /DB_XREF=gi:11388835 /DB_XREF=UI-R-CA0-bhg-f-07-0-UI.s1 /CLONE=UI-R-CA0-bhg-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.59657.1 /TIER=ConsEnd /STK=2 /UG=Rn.59657 /UG_TITLE=ESTs BF400860 1398202_at BF394499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394499 /DB_XREF=gi:11379365 /DB_XREF=UI-R-CA0-bfw-e-12-0-UI.s1 /CLONE=UI-R-CA0-bfw-e-12-0-UI /FEA=EST /CNT=2 /TID=Rn.63294.1 /TIER=ConsEnd /STK=2 /UG=Rn.63294 /UG_TITLE=ESTs BF394499 1398203_at BM387488 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM387488 /DB_XREF=gi:18187541 /DB_XREF=UI-R-CN1-cjj-m-10-0-UI.s1 /CLONE=UI-R-CN1-cjj-m-10-0-UI /FEA=EST /CNT=2 /TID=Rn.82549.1 /TIER=ConsEnd /STK=2 /UG=Rn.82549 /UG_TITLE=ESTs BM387488 1398204_at BE107780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107780 /DB_XREF=gi:8499885 /DB_XREF=UI-R-CA0-aww-g-10-0-UI.s1 /CLONE=UI-R-CA0-aww-g-10-0-UI /FEA=EST /CNT=2 /TID=Rn.62801.1 /TIER=ConsEnd /STK=2 /UG=Rn.62801 /UG_TITLE=ESTs BE107780 1398205_at BF392849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392849 /DB_XREF=gi:11377708 /DB_XREF=UI-R-CA0-bfq-a-01-0-UI.s1 /CLONE=UI-R-CA0-bfq-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.57925.1 /TIER=ConsEnd /STK=2 /UG=Rn.57925 /UG_TITLE=ESTs BF392849 1398206_at BE109223 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109223 /DB_XREF=gi:8501328 /DB_XREF=UI-R-BS1-azd-d-02-0-UI.s1 /CLONE=UI-R-BS1-azd-d-02-0-UI /FEA=EST /CNT=2 /TID=Rn.53080.1 /TIER=ConsEnd /STK=2 /UG=Rn.53080 /UG_TITLE=ESTs BE109223 1398207_at BF396438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396438 /DB_XREF=gi:11381410 /DB_XREF=UI-R-BS2-bdy-b-06-0-UI.s1 /CLONE=UI-R-BS2-bdy-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.58603.1 /TIER=ConsEnd /STK=2 /UG=Rn.58603 /UG_TITLE=ESTs BF396438 1398208_s_at BI285806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285806 /DB_XREF=gi:14939825 /DB_XREF=UI-R-CX0s-ccv-b-02-0-UI.s1 /CLONE=UI-R-CX0s-ccv-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.78533.1 /TIER=ConsEnd /STK=2 /UG=Rn.78533 /UG_TITLE=ESTs BI285806 1398209_at BF413358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413358 /DB_XREF=gi:11401347 /DB_XREF=UI-R-CA0-boe-b-06-0-UI.s1 /CLONE=UI-R-CA0-boe-b-06-0-UI /FEA=EST /CNT=2 /TID=Rn.62315.1 /TIER=ConsEnd /STK=2 /UG=Rn.62315 /UG_TITLE=ESTs BF413358 1398210_at BF401765 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401765 /DB_XREF=gi:11389740 /DB_XREF=UI-R-CA0-bgo-d-10-0-UI.s1 /CLONE=UI-R-CA0-bgo-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.58372.1 /TIER=ConsEnd /STK=2 /UG=Rn.58372 /UG_TITLE=ESTs BF401765 1398211_at BF413560 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413560 /DB_XREF=gi:11401549 /DB_XREF=UI-R-CA0-bof-f-12-0-UI.s1 /CLONE=UI-R-CA0-bof-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.62385.1 /TIER=ConsEnd /STK=2 /UG=Rn.62385 /UG_TITLE=ESTs BF413560 1398212_at BE106655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106655 /DB_XREF=gi:8498757 /DB_XREF=UI-R-BO1-asq-e-11-0-UI.s1 /CLONE=UI-R-BO1-asq-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.49573.1 /TIER=ConsEnd /STK=2 /UG=Rn.49573 /UG_TITLE=ESTs, Highly similar to G02409 protein kinase C-binding protein RACK17 (H.sapiens) BE106655 Oligodendrocyte lineage transcription factor 2 Olig2 304103 NM_001100557 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007399 // nervous system development // inferred from electronic annotation /// 0007399 // nervous system development // not recorded /// 0021529 // spinal cord oligodendrocyte cell differentiation // not recorded /// 0021529 // spinal cord oligodendrocyte cell differentiation // inferred from electronic annotation /// 0021530 // spinal cord oligodendrocyte cell fate specification // inferred from electronic annotation /// 0021530 // spinal cord oligodendrocyte cell fate specification // not recorded /// 0042552 // myelination // inferred from electronic annotation /// 0042552 // myelination // not recorded /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0048663 // neuron fate commitment // inferred from electronic annotation /// 0048663 // neuron fate commitment // not recorded /// 0048709 // oligodendrocyte differentiation // not recorded /// 0048709 // oligodendrocyte differentiation // inferred from electronic annotation /// 0048714 // positive regulation of oligodendrocyte differentiation // inferred from electronic annotation /// 0048714 // positive regulation of oligodendrocyte differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1398213_at BE116195 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116195 /DB_XREF=gi:8508300 /DB_XREF=UI-R-BS1-aya-e-06-0-UI.s1 /CLONE=UI-R-BS1-aya-e-06-0-UI /FEA=EST /CNT=2 /TID=Rn.52637.1 /TIER=ConsEnd /STK=2 /UG=Rn.52637 /UG_TITLE=ESTs BE116195 1398214_at BF399528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399528 /DB_XREF=gi:11384536 /DB_XREF=UI-R-CA1-bjb-j-14-0-UI.s1 /CLONE=UI-R-CA1-bjb-j-14-0-UI /FEA=EST /CNT=2 /TID=Rn.59399.1 /TIER=ConsEnd /STK=2 /UG=Rn.59399 /UG_TITLE=ESTs, Weakly similar to JC5958 sperm surface protein (H.sapiens) BF399528 mitogen-activated protein kinase 8 interacting protein 3 Mapk8ip3 302983 NM_001100673 0001701 // in utero embryonic development // not recorded /// 0007254 // JNK cascade // not recorded /// 0007257 // activation of JUN kinase activity // not recorded /// 0007411 // axon guidance // not recorded /// 0007585 // respiratory gaseous exchange // not recorded /// 0008104 // protein localization // not recorded /// 0009791 // post-embryonic development // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0030900 // forebrain development // not recorded /// 0031175 // neuron projection development // inferred from expression pattern /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0048286 // lung alveolus development // not recorded /// 0060425 // lung morphogenesis // not recorded 0005625 // soluble fraction // not recorded /// 0005737 // cytoplasm // not recorded /// 0005790 // smooth endoplasmic reticulum // not recorded /// 0005886 // plasma membrane // not recorded /// 0030425 // dendrite // not recorded /// 0030673 // axolemma // not recorded /// 0043005 // neuron projection // inferred from direct assay 0016301 // kinase activity // inferred from electronic annotation /// 0031434 // mitogen-activated protein kinase kinase binding // inferred from physical interaction 1398215_at BF409369 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF409369 /DB_XREF=gi:11397344 /DB_XREF=UI-R-CA1-blf-c-04-0-UI.s1 /CLONE=UI-R-CA1-blf-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.61331.1 /TIER=ConsEnd /STK=2 /UG=Rn.61331 /UG_TITLE=ESTs BF409369 1398216_at BF399439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399439 /DB_XREF=gi:11384443 /DB_XREF=UI-R-CA1-bjb-j-07-0-UI.s1 /CLONE=UI-R-CA1-bjb-j-07-0-UI /FEA=EST /CNT=2 /TID=Rn.59290.1 /TIER=ConsEnd /STK=2 /UG=Rn.59290 /UG_TITLE=ESTs BF399439 1398217_at BE108367 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108367 /DB_XREF=gi:8500472 /DB_XREF=UI-R-BS1-ayv-d-12-0-UI.s1 /CLONE=UI-R-BS1-ayv-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.51461.1 /TIER=ConsEnd /STK=2 /UG=Rn.51461 /UG_TITLE=ESTs BE108367 Zinc finger and BTB domain containing 41 Zbtb41 289052 NM_001191670 /// XM_001067122 /// XM_222679 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398218_at BF401475 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401475 /DB_XREF=gi:11389450 /DB_XREF=UI-R-CA0-bgl-a-07-0-UI.s1 /CLONE=UI-R-CA0-bgl-a-07-0-UI /FEA=EST /CNT=2 /TID=Rn.59716.1 /TIER=ConsEnd /STK=2 /UG=Rn.59716 /UG_TITLE=ESTs BF401475 1398219_at BE109914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109914 /DB_XREF=gi:8502019 /DB_XREF=UI-R-CA0-axi-h-01-0-UI.s1 /CLONE=UI-R-CA0-axi-h-01-0-UI /FEA=EST /CNT=2 /TID=Rn.53377.1 /TIER=ConsEnd /STK=2 /UG=Rn.53377 /UG_TITLE=ESTs BE109914 hypothetical protein LOC690918 LOC690918 690918 NM_001109613 1398220_at BE121176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121176 /DB_XREF=gi:8513281 /DB_XREF=UI-R-CA0-bau-h-08-0-UI.s1 /CLONE=UI-R-CA0-bau-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.53258.1 /TIER=ConsEnd /STK=2 /UG=Rn.53258 /UG_TITLE=ESTs BE121176 1398221_at BE120717 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120717 /DB_XREF=gi:8512822 /DB_XREF=UI-R-CA0-bay-g-02-0-UI.s1 /CLONE=UI-R-CA0-bay-g-02-0-UI /FEA=EST /CNT=2 /TID=Rn.52285.1 /TIER=ConsEnd /STK=2 /UG=Rn.52285 /UG_TITLE=ESTs BE120717 1398222_at BF399554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399554 /DB_XREF=gi:11384562 /DB_XREF=UI-R-CA1-bjb-p-06-0-UI.s1 /CLONE=UI-R-CA1-bjb-p-06-0-UI /FEA=EST /CNT=2 /TID=Rn.59409.1 /TIER=ConsEnd /STK=2 /UG=Rn.59409 /UG_TITLE=ESTs BF399554 ring finger protein 24 Rnf24 362218 NM_001108591 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398223_at BE107923 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107923 /DB_XREF=gi:8500028 /DB_XREF=UI-R-CA0-awy-d-03-0-UI.s1 /CLONE=UI-R-CA0-awy-d-03-0-UI /FEA=EST /CNT=2 /TID=Rn.51344.1 /TIER=ConsEnd /STK=2 /UG=Rn.51344 /UG_TITLE=ESTs BE107923 1398224_at BF393183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393183 /DB_XREF=gi:11378043 /DB_XREF=UI-R-CA0-bfp-g-04-0-UI.s1 /CLONE=UI-R-CA0-bfp-g-04-0-UI /FEA=EST /CNT=2 /TID=Rn.57999.1 /TIER=ConsEnd /STK=2 /UG=Rn.57999 /UG_TITLE=ESTs BF393183 1398225_at BF413591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413591 /DB_XREF=gi:11401580 /DB_XREF=UI-R-CA0-bog-a-10-0-UI.s1 /CLONE=UI-R-CA0-bog-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.62394.1 /TIER=ConsEnd /STK=2 /UG=Rn.62394 /UG_TITLE=ESTs BF413591 chromodomain helicase DNA binding protein 6 Chd6 311607 NM_001107797 0006333 // chromatin assembly or disassembly // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation 1398226_at BF413171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413171 /DB_XREF=gi:11401160 /DB_XREF=UI-R-BT1-bnx-e-08-0-UI.s1 /CLONE=UI-R-BT1-bnx-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.62268.1 /TIER=ConsEnd /STK=2 /UG=Rn.62268 /UG_TITLE=ESTs BF413171 1398227_at BE109307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109307 /DB_XREF=gi:8501412 /DB_XREF=UI-R-BJ1-auq-d-07-0-UI.s1 /CLONE=UI-R-BJ1-auq-d-07-0-UI /FEA=EST /CNT=2 /TID=Rn.51704.1 /TIER=ConsEnd /STK=2 /UG=Rn.51704 /UG_TITLE=ESTs BE109307 1398228_at BF394522 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394522 /DB_XREF=gi:11379388 /DB_XREF=UI-R-CA0-bfw-h-02-0-UI.s1 /CLONE=UI-R-CA0-bfw-h-02-0-UI /FEA=EST /CNT=2 /TID=Rn.58275.1 /TIER=ConsEnd /STK=2 /UG=Rn.58275 /UG_TITLE=ESTs BF394522 1398229_at BF415825 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF415825 /DB_XREF=gi:11403814 /DB_XREF=UI-R-CA1-bkf-d-06-0-UI.s1 /CLONE=UI-R-CA1-bkf-d-06-0-UI /FEA=EST /CNT=2 /TID=Rn.62827.1 /TIER=ConsEnd /STK=2 /UG=Rn.62827 /UG_TITLE=ESTs BF415825 1398230_at BF394178 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF394178 /DB_XREF=gi:11379042 /DB_XREF=UI-R-CA0-bhb-b-02-0-UI.s1 /CLONE=UI-R-CA0-bhb-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.51403.1 /TIER=ConsEnd /STK=2 /UG=Rn.51403 /UG_TITLE=ESTs BF394178 1398231_at BE107399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107399 /DB_XREF=gi:8499504 /DB_XREF=UI-R-BS1-ayt-c-06-0-UI.s1 /CLONE=UI-R-BS1-ayt-c-06-0-UI /FEA=EST /CNT=2 /TID=Rn.51171.1 /TIER=ConsEnd /STK=2 /UG=Rn.51171 /UG_TITLE=ESTs BE107399 1398232_at BF418571 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418571 /DB_XREF=gi:11406560 /DB_XREF=UI-R-BJ2-bqh-e-02-0-UI.s1 /CLONE=UI-R-BJ2-bqh-e-02-0-UI /FEA=EST /CNT=2 /TID=Rn.63427.1 /TIER=ConsEnd /STK=2 /UG=Rn.63427 /UG_TITLE=ESTs BF418571 1398233_at BE095550 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE095550 /DB_XREF=gi:8486481 /DB_XREF=UI-R-BU0-apa-h-07-0-UI.s1 /CLONE=UI-R-BU0-apa-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.49314.1 /TIER=ConsEnd /STK=2 /UG=Rn.49314 /UG_TITLE=ESTs BE095550 1398234_at BF413677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413677 /DB_XREF=gi:11401666 /DB_XREF=UI-R-CA0-boh-c-03-0-UI.s1 /CLONE=UI-R-CA0-boh-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.62421.1 /TIER=ConsEnd /STK=2 /UG=Rn.62421 /UG_TITLE=ESTs BF413677 1398235_at BE097092 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097092 /DB_XREF=gi:8488023 /DB_XREF=UI-R-BO1-apt-a-12-0-UI.s1 /CLONE=UI-R-BO1-apt-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.49532.1 /TIER=ConsEnd /STK=2 /UG=Rn.49532 /UG_TITLE=ESTs BE097092 1398236_at BM386693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386693 /DB_XREF=gi:18186746 /DB_XREF=UI-R-CN1-cjg-b-02-0-UI.s1 /CLONE=UI-R-CN1-cjg-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.81788.1 /TIER=ConsEnd /STK=2 /UG=Rn.81788 /UG_TITLE=ESTs BM386693 1398237_at BF390890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390890 /DB_XREF=gi:11375737 /DB_XREF=UI-R-CA1-bci-f-09-0-UI.s1 /CLONE=UI-R-CA1-bci-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.57318.1 /TIER=ConsEnd /STK=2 /UG=Rn.57318 /UG_TITLE=ESTs BF390890 1398238_at BE107786 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107786 /DB_XREF=gi:8499891 /DB_XREF=UI-R-CA0-aww-h-04-0-UI.s1 /CLONE=UI-R-CA0-aww-h-04-0-UI /FEA=EST /CNT=2 /TID=Rn.51288.1 /TIER=ConsEnd /STK=2 /UG=Rn.51288 /UG_TITLE=ESTs BE107786 1398239_at BF390399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390399 /DB_XREF=gi:11375245 /DB_XREF=UI-R-CA1-bcg-e-08-0-UI.s1 /CLONE=UI-R-CA1-bcg-e-08-0-UI /FEA=EST /CNT=2 /TID=Rn.56632.1 /TIER=ConsEnd /STK=2 /UG=Rn.56632 /UG_TITLE=ESTs BF390399 1398240_at NM_024351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024351.1 /DB_XREF=gi:13242236 /GEN=Hspa8 /FEA=FLmRNA /CNT=111 /TID=Rn.3672.1 /TIER=FL+Stack /STK=66 /UG=Rn.3672 /LL=24468 /DEF=Rattus norvegicus heat shock 70kD protein 8 (Hspa8), mRNA. /PROD=heat shock 70kD protein 8 /FL=gb:NM_024351.1 gb:M11942.1 NM_024351 heat shock protein A8 Hspa8 24468 NM_024351 0006200 // ATP catabolic process // not recorded /// 0006457 // protein folding // not recorded /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0051085 // chaperone mediated protein folding requiring cofactor // inferred from direct assay /// 0051085 // chaperone mediated protein folding requiring cofactor // not recorded /// 0051726 // regulation of cell cycle // not recorded /// 0061077 // chaperone-mediated protein folding // inferred from direct assay 0005622 // intracellular // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0009986 // cell surface // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0042470 // melanosome // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // inferred from direct assay /// 0070062 // extracellular vesicular exosome // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005102 // receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0042623 // ATPase activity, coupled // inferred from direct assay /// 0042623 // ATPase activity, coupled // not recorded /// 0043531 // ADP binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from mutant phenotype /// 0051082 // unfolded protein binding // not recorded 1398241_a_at NM_019171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019171.1 /DB_XREF=gi:9507138 /GEN=Spt1 /FEA=FLmRNA /CNT=33 /TID=Rn.9933.1 /TIER=FL+Stack /STK=33 /UG=Rn.9933 /LL=29229 /DEF=Rattus norvegicus salivary protein 1 (Spt1), mRNA. /PROD=salivary protein 1 /FL=gb:NM_019171.1 gb:M33976.1 NM_019171 salivary protein 1 Spt1 29229 NM_019171 1398242_at NM_031729 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031729.1 /DB_XREF=gi:13929023 /GEN=Ppp5c /FEA=FLmRNA /CNT=37 /TID=Rn.6107.1 /TIER=FL+Stack /STK=26 /UG=Rn.6107 /LL=65179 /DEF=Rattus norvegicus protein phosphatase 5, catalytic subunit (Ppp5c), mRNA. /PROD=protein phosphatase 5, catalytic subunit /FL=gb:NM_031729.1 NM_031729 protein phosphatase 5, catalytic subunit Ppp5c 65179 NM_031729 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0016311 // dephosphorylation // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043278 // response to morphine // inferred from electronic annotation /// 0043278 // response to morphine // not recorded /// 0051291 // protein heterooligomerization // inferred from physical interaction 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0043005 // neuron projection // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // not recorded /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398243_at NM_057144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057144.1 /DB_XREF=gi:16924003 /GEN=Csrp3 /FEA=FLmRNA /CNT=25 /TID=Rn.11345.1 /TIER=FL+Stack /STK=22 /UG=Rn.11345 /LL=117505 /DEF=Rattus norvegicus cysteine-rich protein 3 (Csrp3), mRNA. /PROD=cysteine-rich protein 3 /FL=gb:NM_057144.1 NM_057144 cysteine and glycine-rich protein 3 Csrp3 117505 NM_057144 0001974 // blood vessel remodeling // inferred from expression pattern /// 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002026 // regulation of the force of heart contraction // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0048738 // cardiac muscle tissue development // inferred from electronic annotation /// 0048738 // cardiac muscle tissue development // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030018 // Z disc // inferred from electronic annotation /// 0030018 // Z disc // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398244_at NM_133417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133417.1 /DB_XREF=gi:19173785 /GEN=P29 /FEA=FLmRNA /CNT=38 /TID=Rn.8170.1 /TIER=FL+Stack /STK=18 /UG=Rn.8170 /LL=170933 /DEF=Rattus norvegicus GCIP-interacting protein p29 (P29), mRNA. /PROD=GCIP-interacting protein p29 /FL=gb:NM_133417.1 gb:AF366369.1 NM_133417 SYF2 homolog, RNA splicing factor (S. cerevisiae) Syf2 170933 NM_133417 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005681 // spliceosomal complex // inferred from electronic annotation 1398245_at NM_031688 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031688.1 /DB_XREF=gi:13928953 /GEN=Sncg /FEA=FLmRNA /CNT=66 /TID=Rn.10421.1 /TIER=FL+Stack /STK=16 /UG=Rn.10421 /LL=64347 /DEF=Rattus norvegicus synuclein, gamma (Sncg), mRNA. /PROD=synuclein, gamma /FL=gb:NM_031688.1 NM_031688 synuclein, gamma (breast cancer-specific protein 1) Sncg 64347 NM_031688 0007422 // peripheral nervous system development // non-traceable author statement /// 0008344 // adult locomotory behavior // not recorded /// 0014059 // regulation of dopamine secretion // not recorded /// 0046928 // regulation of neurotransmitter secretion // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0043025 // neuronal cell body // inferred from direct assay /// 0043025 // neuronal cell body // not recorded /// 0043679 // axon terminus // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded 1398246_s_at NM_053843 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053843.1 /DB_XREF=gi:16758699 /GEN=Fcgr3 /FEA=FLmRNA /CNT=21 /TID=Rn.6050.1 /TIER=FL+Stack /STK=15 /UG=Rn.6050 /LL=116591 /DEF=Rattus norvegicus Fc receptor, IgG, low affinity III (Fcgr3), mRNA. /PROD=Fc receptor, IgG, low affinity III /FL=gb:NM_053843.1 gb:M64370.1 gb:M64368.1 gb:M64369.1 gb:M32062.1 NM_053843 Fc fragment of IgG, low affinity IIa, receptor (CD32) /// Fc gamma receptor II beta Fcgr2a /// LOC498276 116591 /// 498276 NM_001135992 /// NM_053843 0001788 // antibody-dependent cellular cytotoxicity // not recorded /// 0001798 // positive regulation of type IIa hypersensitivity // not recorded /// 0001805 // positive regulation of type III hypersensitivity // not recorded /// 0001812 // positive regulation of type I hypersensitivity // not recorded /// 0001820 // serotonin secretion // not recorded /// 0006910 // phagocytosis, recognition // not recorded /// 0006911 // phagocytosis, engulfment // not recorded /// 0007165 // signal transduction // not recorded /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0021675 // nerve development // inferred from expression pattern /// 0030593 // neutrophil chemotaxis // not recorded /// 0042535 // positive regulation of tumor necrosis factor biosynthetic process // not recorded /// 0042590 // antigen processing and presentation of exogenous peptide antigen via MHC class I // not recorded /// 0045576 // mast cell activation // not recorded /// 0050766 // positive regulation of phagocytosis // not recorded /// 0050776 // regulation of immune response // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019770 // IgG receptor activity // inferred from direct assay /// 0019770 // IgG receptor activity // not recorded /// 0019864 // IgG binding // not recorded /// 0019864 // IgG binding // inferred from electronic annotation 1398247_at NM_133404 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133404.1 /DB_XREF=gi:19173765 /GEN=Prss15 /FEA=FLmRNA /CNT=15 /TID=Rn.23271.1 /TIER=FL+Stack /STK=14 /UG=Rn.23271 /DEF=Rattus norvegicus protease, serine, 15 (Prss15), mRNA. /PROD=protease, serine, 15 /FL=gb:NM_133404.1 gb:AB064323.1 NM_133404 lon peptidase 1, mitochondrial Lonp1 170916 NM_133404 0001666 // response to hypoxia // inferred from expression pattern /// 0001666 // response to hypoxia // not recorded /// 0006200 // ATP catabolic process // not recorded /// 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // not recorded /// 0007005 // mitochondrion organization // inferred from expression pattern /// 0007005 // mitochondrion organization // not recorded /// 0007568 // aging // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0010044 // response to aluminum ion // inferred from expression pattern /// 0034599 // cellular response to oxidative stress // not recorded /// 0043623 // cellular protein complex assembly // inferred from mutant phenotype /// 0051260 // protein homooligomerization // not recorded /// 0051603 // proteolysis involved in cellular protein catabolic process // not recorded /// 0070407 // oxidation-dependent protein catabolic process // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0042645 // mitochondrial nucleoid // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // not recorded /// 0003727 // single-stranded RNA binding // not recorded /// 0004176 // ATP-dependent peptidase activity // inferred from direct assay /// 0004176 // ATP-dependent peptidase activity // not recorded /// 0004176 // ATP-dependent peptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0043531 // ADP binding // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0051880 // G-quadruplex DNA binding // not recorded /// 0070182 // DNA polymerase binding // not recorded /// 0070361 // mitochondrial light strand promoter anti-sense binding // not recorded /// 0070362 // mitochondrial heavy strand promoter anti-sense binding // not recorded /// 0070363 // mitochondrial light strand promoter sense binding // not recorded /// 0070364 // mitochondrial heavy strand promoter sense binding // not recorded 1398248_s_at NM_017240 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017240.1 /DB_XREF=gi:8393806 /GEN=Myh7 /FEA=FLmRNA /CNT=62 /TID=Rn.48663.1 /TIER=FL+Stack /STK=12 /UG=Rn.48663 /LL=29557 /DEF=Rattus norvegicus myosin heavy chain, cardiac muscle, fetal (Myh7), mRNA. /PROD=myosin heavy chain, cardiac muscle, fetal /FL=gb:NM_017240.1 NM_017240 myosin, heavy chain 6, cardiac muscle, alpha /// myosin, heavy chain 7, cardiac muscle, beta Myh6 /// Myh7 29556 /// 29557 NM_017239 /// NM_017240 0000302 // response to reactive oxygen species // inferred from expression pattern /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002026 // regulation of the force of heart contraction // not recorded /// 0002027 // regulation of heart rate // inferred from electronic annotation /// 0002027 // regulation of heart rate // not recorded /// 0006200 // ATP catabolic process // inferred from mutant phenotype /// 0006200 // ATP catabolic process // not recorded /// 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006936 // muscle contraction // inferred from mutant phenotype /// 0006936 // muscle contraction // not recorded /// 0006936 // muscle contraction // inferred from electronic annotation /// 0006941 // striated muscle contraction // inferred from electronic annotation /// 0006941 // striated muscle contraction // not recorded /// 0007512 // adult heart development // inferred from electronic annotation /// 0007512 // adult heart development // not recorded /// 0007522 // visceral muscle development // inferred from electronic annotation /// 0007522 // visceral muscle development // not recorded /// 0008016 // regulation of heart contraction // not recorded /// 0008016 // regulation of heart contraction // inferred from electronic annotation /// 0008217 // regulation of blood pressure // inferred from electronic annotation /// 0008217 // regulation of blood pressure // not recorded /// 0030048 // actin filament-based movement // inferred from electronic annotation /// 0030048 // actin filament-based movement // not recorded /// 0030049 // muscle filament sliding // inferred from electronic annotation /// 0030049 // muscle filament sliding // not recorded /// 0030239 // myofibril assembly // not recorded /// 0030239 // myofibril assembly // inferred from electronic annotation /// 0043462 // regulation of ATPase activity // inferred from electronic annotation /// 0043462 // regulation of ATPase activity // not recorded /// 0045214 // sarcomere organization // inferred from electronic annotation /// 0045214 // sarcomere organization // not recorded /// 0048739 // cardiac muscle fiber development // inferred from electronic annotation /// 0048739 // cardiac muscle fiber development // not recorded /// 0055009 // atrial cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055009 // atrial cardiac muscle tissue morphogenesis // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005859 // muscle myosin complex // inferred from direct assay /// 0005925 // focal adhesion // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0016459 // myosin complex // not recorded /// 0016459 // myosin complex // inferred from electronic annotation /// 0030016 // myofibril // inferred from direct assay /// 0030016 // myofibril // not recorded /// 0030016 // myofibril // inferred from electronic annotation /// 0032982 // myosin filament // inferred from electronic annotation /// 0043292 // contractile fiber // inferred from mutant phenotype /// 0048471 // perinuclear region of cytoplasm // inferred from mutant phenotype 0000146 // microfilament motor activity // inferred from mutant phenotype /// 0000146 // microfilament motor activity // not recorded /// 0000146 // microfilament motor activity // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from electronic annotation /// 0008307 // structural constituent of muscle // inferred from electronic annotation /// 0008307 // structural constituent of muscle // not recorded /// 0016887 // ATPase activity // not recorded /// 0016887 // ATPase activity // inferred from mutant phenotype /// 0016887 // ATPase activity // inferred from electronic annotation /// 0030898 // actin-dependent ATPase activity // inferred from electronic annotation /// 0030898 // actin-dependent ATPase activity // not recorded /// 0030899 // calcium-dependent ATPase activity // inferred from mutant phenotype /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0051015 // actin filament binding // inferred from electronic annotation 1398249_at NM_053965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053965.1 /DB_XREF=gi:16758853 /GEN=Slc25a20 /FEA=FLmRNA /CNT=45 /TID=Rn.3289.1 /TIER=FL+Stack /STK=11 /UG=Rn.3289 /LL=117035 /DEF=Rattus norvegicus solute carrier family 25 (carnitineacylcarnitine translocase), member 20 (Slc25a20), mRNA. /PROD=solute carrier family 25(carnitineacylcarnitine translocase), member 20 /FL=gb:NM_053965.1 NM_053965 solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 Slc25a20 117035 NM_053965 0006810 // transport // non-traceable author statement /// 0006810 // transport // inferred from electronic annotation /// 0006853 // carnitine shuttle // not recorded /// 0046320 // regulation of fatty acid oxidation // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // traceable author statement /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0015227 // acyl carnitine transporter activity // not recorded 1398250_at NM_031315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031315.1 /DB_XREF=gi:13786131 /GEN=Cte1 /FEA=FLmRNA /CNT=12 /TID=Rn.11326.1 /TIER=FL+Stack /STK=11 /UG=Rn.11326 /LL=50559 /DEF=Rattus norvegicus acyl-CoA thioesterase 1, cytosolic (Cte1), mRNA. /PROD=acyl-CoA thioesterase 1, cytosolic /FL=gb:AB010428.1 gb:NM_031315.1 NM_031315 acyl-CoA thioesterase 1 Acot1 50559 NM_031315 0001676 // long-chain fatty acid metabolic process // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // traceable author statement /// 0006637 // acyl-CoA metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0016290 // palmitoyl-CoA hydrolase activity // inferred from electronic annotation /// 0016291 // acyl-CoA thioesterase activity // inferred from direct assay /// 0016291 // acyl-CoA thioesterase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016790 // thiolester hydrolase activity // inferred from electronic annotation 1398251_a_at NM_021739 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021739.1 /DB_XREF=gi:11120681 /GEN=Camk2b /FEA=FLmRNA /CNT=11 /TID=Rn.9743.1 /TIER=FL+Stack /STK=10 /UG=Rn.9743 /LL=24245 /DEF=Rattus norvegicus Ca++calmodulin-dependent protein kinase II, beta subunit (Camk2b), mRNA. /PROD=Ca++calmodulin-dependent protein kinase II,beta subunit /FL=gb:NM_021739.1 gb:M16112.1 NM_021739 calcium/calmodulin-dependent protein kinase II beta Camk2b 24245 NM_001042354 /// NM_001042356 /// NM_021739 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0046777 // protein autophosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // not recorded 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005954 // calcium- and calmodulin-dependent protein kinase complex // traceable author statement /// 0030666 // endocytic vesicle membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1398252_at NM_017209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017209.1 /DB_XREF=gi:8393847 /GEN=Nrbf1 /FEA=FLmRNA /CNT=11 /TID=Rn.15375.1 /TIER=FL+Stack /STK=9 /UG=Rn.15375 /LL=29470 /DEF=Rattus norvegicus nuclear receptor binding factor 1 (Nrbf1), mRNA. /PROD=nuclear receptor binding factor 1 /FL=gb:NM_017209.1 gb:AB015724.1 NM_017209 mitochondrial trans-2-enoyl-CoA reductase Mecr 29470 NM_017209 0006631 // fatty acid metabolic process // not recorded /// 0006631 // fatty acid metabolic process // inferred from sequence or structural similarity /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005102 // receptor binding // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0019166 // trans-2-enoyl-CoA reductase (NADPH) activity // not recorded /// 0019166 // trans-2-enoyl-CoA reductase (NADPH) activity // inferred from sequence or structural similarity /// 0019166 // trans-2-enoyl-CoA reductase (NADPH) activity // inferred from electronic annotation 1398253_at NM_052802 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_052802.1 /DB_XREF=gi:16258814 /GEN=Kap /FEA=FLmRNA /CNT=11 /TID=Rn.11143.1 /TIER=FL+Stack /STK=8 /UG=Rn.11143 /LL=24937 /DEF=Rattus norvegicus Kidney androgen-regulated protein (Kap), mRNA. /PROD=kidney androgen-regulated protein /FL=gb:NM_052802.1 gb:U25808.1 NM_052802 kidney androgen regulated protein Kap 24937 NM_052802 0005576 // extracellular region // inferred from electronic annotation 1398254_at NM_031095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031095.1 /DB_XREF=gi:13592042 /GEN=Renbp /FEA=FLmRNA /CNT=8 /TID=Rn.11116.1 /TIER=FL+Stack /STK=8 /UG=Rn.11116 /LL=81759 /DEF=Rattus norvegicus renin-binding protein (Renbp), mRNA. /PROD=renin-binding protein /FL=gb:D10233.1 gb:NM_031095.1 NM_031095 renin binding protein Renbp 81759 NM_031095 0006013 // mannose metabolic process // inferred from electronic annotation /// 0006044 // N-acetylglucosamine metabolic process // inferred from electronic annotation /// 0006044 // N-acetylglucosamine metabolic process // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004476 // mannose-6-phosphate isomerase activity // inferred from electronic annotation /// 0004857 // enzyme inhibitor activity // inferred from direct assay /// 0004857 // enzyme inhibitor activity // traceable author statement /// 0005515 // protein binding // traceable author statement /// 0005524 // ATP binding // inferred from direct assay /// 0016853 // isomerase activity // inferred from electronic annotation /// 0017076 // purine nucleotide binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0050121 // N-acylglucosamine 2-epimerase activity // inferred from direct assay /// 0050121 // N-acylglucosamine 2-epimerase activity // not recorded /// 0050121 // N-acylglucosamine 2-epimerase activity // traceable author statement /// 0050121 // N-acylglucosamine 2-epimerase activity // inferred from electronic annotation 1398255_at NM_031672 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031672.1 /DB_XREF=gi:13928929 /GEN=Slc15a2 /FEA=FLmRNA /CNT=12 /TID=Rn.2593.1 /TIER=FL+Stack /STK=7 /UG=Rn.2593 /LL=60577 /DEF=Rattus norvegicus solute carrier family 15 (H+peptide transporter), member 2 (Slc15a2), mRNA. /PROD=solute carrier family 15 (H+peptidetransporter), member 2 /FL=gb:NM_031672.1 gb:D63149.1 NM_031672 solute carrier family 15 (H+/peptide transporter), member 2 Slc15a2 60577 NM_031672 0006810 // transport // inferred from electronic annotation /// 0006857 // oligopeptide transport // not recorded /// 0006857 // oligopeptide transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0015833 // peptide transport // inferred from electronic annotation /// 0042891 // antibiotic transport // inferred from mutant phenotype /// 0042938 // dipeptide transport // inferred from direct assay 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015198 // oligopeptide transporter activity // inferred from electronic annotation /// 0015293 // symporter activity // inferred from electronic annotation /// 0015334 // high affinity oligopeptide transporter activity // inferred from electronic annotation /// 0015334 // high affinity oligopeptide transporter activity // not recorded /// 0042895 // antibiotic transporter activity // inferred from mutant phenotype /// 0042936 // dipeptide transporter activity // inferred from direct assay 1398256_at NM_031512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031512.1 /DB_XREF=gi:13928691 /GEN=Il1b /FEA=FLmRNA /CNT=13 /TID=Rn.9869.1 /TIER=FL+Stack /STK=6 /UG=Rn.9869 /LL=24494 /DEF=Rattus norvegicus Interleukin 1 beta (Il1b), mRNA. /PROD=interleukin 1 beta /FL=gb:M98820.1 gb:NM_031512.1 NM_031512 interleukin 1 beta Il1b 24494 NM_031512 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0001660 // fever // inferred from electronic annotation /// 0001660 // fever // inferred from expression pattern /// 0001666 // response to hypoxia // inferred from expression pattern /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0002439 // chronic inflammatory response to antigenic stimulus // inferred from expression pattern /// 0006916 // anti-apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // not recorded /// 0006954 // inflammatory response // inferred from expression pattern /// 0006954 // inflammatory response // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007568 // aging // inferred from mutant phenotype /// 0007584 // response to nutrient // inferred from expression pattern /// 0007611 // learning or memory // inferred from expression pattern /// 0007613 // memory // inferred from mutant phenotype /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009408 // response to heat // inferred from expression pattern /// 0010193 // response to ozone // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0010332 // response to gamma radiation // inferred from expression pattern /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010575 // positive regulation vascular endothelial growth factor production // inferred from electronic annotation /// 0010575 // positive regulation vascular endothelial growth factor production // not recorded /// 0010829 // negative regulation of glucose transport // inferred from electronic annotation /// 0010829 // negative regulation of glucose transport // not recorded /// 0014050 // negative regulation of glutamate secretion // inferred from mutant phenotype /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0019221 // cytokine-mediated signaling pathway // inferred from expression pattern /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0019221 // cytokine-mediated signaling pathway // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // inferred from electronic annotation /// 0030593 // neutrophil chemotaxis // not recorded /// 0030728 // ovulation // inferred from expression pattern /// 0030730 // sequestering of triglyceride // inferred from electronic annotation /// 0030730 // sequestering of triglyceride // not recorded /// 0031622 // positive regulation of fever // not recorded /// 0032308 // positive regulation of prostaglandin secretion // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // not recorded /// 0032496 // response to lipopolysaccharide // inferred from electronic annotation /// 0032755 // positive regulation of interleukin-6 production // inferred from direct assay /// 0032755 // positive regulation of interleukin-6 production // not recorded /// 0032755 // positive regulation of interleukin-6 production // inferred from electronic annotation /// 0032874 // positive regulation of stress-activated MAPK cascade // inferred from direct assay /// 0032874 // positive regulation of stress-activated MAPK cascade // inferred from mutant phenotype /// 0033198 // response to ATP // inferred from electronic annotation /// 0033198 // response to ATP // not recorded /// 0033280 // response to vitamin D // inferred from expression pattern /// 0033591 // response to L-ascorbic acid // inferred from expression pattern /// 0035176 // social behavior // inferred from mutant phenotype /// 0042060 // wound healing // inferred from expression pattern /// 0042102 // positive regulation of T cell proliferation // inferred from electronic annotation /// 0042102 // positive regulation of T cell proliferation // not recorded /// 0042221 // response to chemical stimulus // not recorded /// 0042221 // response to chemical stimulus // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043122 // regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043122 // regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from direct assay /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043278 // response to morphine // inferred from expression pattern /// 0043407 // negative regulation of MAP kinase activity // inferred from electronic annotation /// 0043407 // negative regulation of MAP kinase activity // not recorded /// 0043507 // positive regulation of JUN kinase activity // inferred from mutant phenotype /// 0045080 // positive regulation of chemokine biosynthetic process // inferred from electronic annotation /// 0045080 // positive regulation of chemokine biosynthetic process // not recorded /// 0045086 // positive regulation of interleukin-2 biosynthetic process // inferred from electronic annotation /// 0045086 // positive regulation of interleukin-2 biosynthetic process // not recorded /// 0045410 // positive regulation of interleukin-6 biosynthetic process // inferred from electronic annotation /// 0045410 // positive regulation of interleukin-6 biosynthetic process // not recorded /// 0045429 // positive regulation of nitric oxide biosynthetic process // inferred from electronic annotation /// 0045429 // positive regulation of nitric oxide biosynthetic process // not recorded /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded /// 0045833 // negative regulation of lipid metabolic process // not recorded /// 0045833 // negative regulation of lipid metabolic process // inferred from electronic annotation /// 0045840 // positive regulation of mitosis // inferred from electronic annotation /// 0045840 // positive regulation of mitosis // not recorded /// 0046330 // positive regulation of JNK cascade // inferred from direct assay /// 0046330 // positive regulation of JNK cascade // not recorded /// 0046330 // positive regulation of JNK cascade // inferred from electronic annotation /// 0046627 // negative regulation of insulin receptor signaling pathway // inferred from electronic annotation /// 0046627 // negative regulation of insulin receptor signaling pathway // not recorded /// 0050796 // regulation of insulin secretion // inferred from electronic annotation /// 0050796 // regulation of insulin secretion // not recorded /// 0050900 // leukocyte migration // inferred from electronic annotation /// 0050900 // leukocyte migration // not recorded /// 0050995 // negative regulation of lipid catabolic process // inferred from electronic annotation /// 0050995 // negative regulation of lipid catabolic process // not recorded /// 0050996 // positive regulation of lipid catabolic process // inferred from electronic annotation /// 0050996 // positive regulation of lipid catabolic process // not recorded /// 0051044 // positive regulation of membrane protein ectodomain proteolysis // inferred from electronic annotation /// 0051044 // positive regulation of membrane protein ectodomain proteolysis // not recorded /// 0051091 // positive regulation of transcription factor activity // not recorded /// 0051091 // positive regulation of transcription factor activity // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // inferred from electronic annotation /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0060559 // positive regulation of calcidiol 1-monooxygenase activity // inferred from electronic annotation /// 0060559 // positive regulation of calcidiol 1-monooxygenase activity // not recorded /// 0070164 // negative regulation of adiponectin secretion // inferred from electronic annotation /// 0070164 // negative regulation of adiponectin secretion // not recorded /// 0070374 // positive regulation of ERK1 and ERK2 cascade // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from electronic annotation /// 0030141 // stored secretory granule // not recorded /// 0031982 // vesicle // inferred from electronic annotation /// 0031982 // vesicle // not recorded 0005125 // cytokine activity // not recorded /// 0005125 // cytokine activity // traceable author statement /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005149 // interleukin-1 receptor binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded 1398257_at NM_022668 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022668.1 /DB_XREF=gi:12083598 /GEN=Mog /FEA=FLmRNA /CNT=9 /TID=Rn.9687.1 /TIER=FL+Stack /STK=6 /UG=Rn.9687 /LL=24558 /DEF=Rattus norvegicus Myelin oligodendrocyte glycoprotein (Mog), mRNA. /PROD=myelin oligodendrocyte glycoprotein /FL=gb:NM_022668.1 gb:M99485.1 NM_022668 myelin oligodendrocyte glycoprotein Mog 24558 NM_022668 0007155 // cell adhesion // inferred from electronic annotation /// 0034126 // positive regulation of MyD88-dependent toll-like receptor signaling pathway // inferred from mutant phenotype 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1398258_at NM_012777 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012777.1 /DB_XREF=gi:6978522 /GEN=Apod /FEA=FLmRNA /CNT=17 /TID=Rn.11339.1 /TIER=FL /STK=5 /UG=Rn.11339 /LL=25239 /DEF=Rattus norvegicus Apolipoprotein D (Apod), mRNA. /PROD=apolipoprotein D /FL=gb:NM_012777.1 NM_012777 apolipoprotein D Apod 25239 NM_012777 0006810 // transport // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0007568 // aging // inferred from expression pattern /// 0014012 // peripheral nervous system axon regeneration // inferred from expression pattern /// 0042246 // tissue regeneration // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005622 // intracellular // not recorded /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0022626 // cytosolic ribosome // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005501 // retinoid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation 1398259_at NM_053952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053952.1 /DB_XREF=gi:16758833 /GEN=Nup155 /FEA=FLmRNA /CNT=9 /TID=Rn.11328.1 /TIER=FL /STK=5 /UG=Rn.11328 /LL=117021 /DEF=Rattus norvegicus nucleoporin 155kD (Nup155), mRNA. /PROD=nucleoporin 155kD /FL=gb:NM_053952.1 NM_053952 nucleoporin 155 Nup155 117021 NM_053952 0006810 // transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0005643 // nuclear pore // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0046930 // pore complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015288 // porin activity // inferred from electronic annotation /// 0017056 // structural constituent of nuclear pore // inferred from electronic annotation 1398260_a_at NM_024382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024382.1 /DB_XREF=gi:13242284 /GEN=Serpind1 /FEA=FLmRNA /CNT=6 /TID=Rn.10553.1 /TIER=FL /STK=5 /UG=Rn.10553 /LL=79224 /DEF=Rattus norvegicus leuserpin-2 (Serpind1), mRNA. /PROD=leuserpin-2 /FL=gb:NM_024382.1 NM_024382 serine (or cysteine) peptidase inhibitor, clade D, member 1 Serpind1 79224 NM_024382 0007596 // blood coagulation // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // traceable author statement /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation 1398261_at NM_017267 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017267.1 /DB_XREF=gi:8394448 /GEN=Timm44 /FEA=FLmRNA /CNT=13 /TID=Rn.10801.1 /TIER=FL /STK=4 /UG=Rn.10801 /LL=29635 /DEF=Rattus norvegicus translocator of inner mitochondrial membrane 44 (Timm44), mRNA. /PROD=translocator of inner mitochondrial membrane 44 /FL=gb:NM_017267.1 gb:AB006452.1 NM_017267 translocase of inner mitochondrial membrane 44 homolog (yeast) Timm44 29635 NM_017267 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from mutant phenotype /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from mutant phenotype /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005744 // mitochondrial inner membrane presequence translocase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction /// 0051087 // chaperone binding // inferred from physical interaction 1398262_at NM_012634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012634.1 /DB_XREF=gi:6981417 /GEN=Prps2 /FEA=FLmRNA /CNT=8 /TID=Rn.11320.1 /TIER=FL /STK=4 /UG=Rn.11320 /LL=24689 /DEF=Rattus norvegicus Phophoribosylpyrophosphate synthetase, subunit II (Prps2), mRNA. /PROD=phophoribosylpyrophosphate synthetase, subunitII /FL=gb:NM_012634.1 gb:M29393.1 gb:M17259.1 NM_012634 phosphoribosyl pyrophosphate synthetase 2 Prps2 24689 NM_012634 0006167 // AMP biosynthetic process // inferred from direct assay /// 0009116 // nucleoside metabolic process // inferred from electronic annotation /// 0009156 // ribonucleoside monophosphate biosynthetic process // inferred from electronic annotation /// 0009165 // nucleotide biosynthetic process // inferred from direct assay /// 0009165 // nucleotide biosynthetic process // inferred from electronic annotation /// 0019693 // ribose phosphate metabolic process // inferred from direct assay /// 0031100 // organ regeneration // inferred from expression pattern /// 0044249 // cellular biosynthetic process // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from direct assay /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004749 // ribose phosphate diphosphokinase activity // inferred from direct assay /// 0004749 // ribose phosphate diphosphokinase activity // inferred from sequence or structural similarity /// 0004749 // ribose phosphate diphosphokinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from direct assay /// 0016208 // AMP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019003 // GDP binding // inferred from direct assay /// 0042803 // protein homodimerization activity // inferred from sequence or structural similarity /// 0043531 // ADP binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1398263_at NM_019355 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019355.1 /DB_XREF=gi:9506510 /GEN=CPG2 /FEA=FLmRNA /CNT=5 /TID=Rn.1988.1 /TIER=FL /STK=4 /UG=Rn.1988 /LL=54317 /DEF=Rattus norvegicus CPG2 protein (CPG2), mRNA. /PROD=CPG2 protein /FL=gb:NM_019355.1 NM_019355 spectrin repeat containing, nuclear envelope 1 Syne1 499010 NM_001029909 0007030 // Golgi organization // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0009416 // response to light stimulus // inferred from expression pattern /// 0040023 // establishment of nucleus localization // not recorded /// 0042692 // muscle cell differentiation // not recorded /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from mutant phenotype /// 0048814 // regulation of dendrite morphogenesis // inferred from mutant phenotype /// 0090286 // cytoskeletal anchoring at nuclear membrane // not recorded /// 0090292 // nuclear matrix anchoring at nuclear membrane // not recorded 0005635 // nuclear envelope // inferred from direct assay /// 0005635 // nuclear envelope // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005819 // spindle // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0030017 // sarcomere // not recorded /// 0030496 // midbody // inferred from direct assay /// 0034993 // SUN-KASH complex // not recorded /// 0043197 // dendritic spine // inferred from direct assay /// 0045211 // postsynaptic membrane // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005198 // structural molecule activity // traceable author statement /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005521 // lamin binding // not recorded 1398264_at NM_012890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012890.1 /DB_XREF=gi:6981713 /GEN=Slc30a2 /FEA=FLmRNA /CNT=8 /TID=Rn.11135.1 /TIER=FL /STK=3 /UG=Rn.11135 /LL=25362 /DEF=Rattus norvegicus Zink transporter 2 (Slc30a2), mRNA. /PROD=zink transporter 2 /FL=gb:U50927.1 gb:NM_012890.1 NM_012890 solute carrier family 30 (zinc transporter), member 2 Slc30a2 25362 NM_001083122 /// NM_012890 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006829 // zinc ion transport // inferred from direct assay /// 0006829 // zinc ion transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0061090 // positive regulation of sequestering of zinc ion // not recorded 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0010008 // endosome membrane // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay /// 0044444 // cytoplasmic part // not recorded 0005385 // zinc ion transmembrane transporter activity // not recorded /// 0005385 // zinc ion transmembrane transporter activity // inferred from direct assay /// 0008324 // cation transmembrane transporter activity // inferred from electronic annotation 1398265_at NM_013040 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013040.2 /DB_XREF=gi:19923677 /GEN=Abcc9 /FEA=FLmRNA /CNT=7 /TID=Rn.10528.1 /TIER=FL /STK=3 /UG=Rn.10528 /LL=25560 /DEF=Rattus norvegicus ATP-binding cassette, sub-family C (CFTRMRP), member 9 (Abcc9), mRNA. /PROD=ATP-binding cassette, sub-family C (CFTRMRP),member 9 /FL=gb:AF019628.1 gb:NM_013040.2 gb:AF087838.1 gb:AB045281.1 NM_013040 ATP-binding cassette, sub-family C (CFTR/MRP), member 9 Abcc9 25560 NM_013040 0006810 // transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006932 // substrate-dependent cell migration, cell contraction // non-traceable author statement /// 0010107 // potassium ion import // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0051607 // defense response to virus // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005624 // membrane fraction // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0008282 // ATP-sensitive potassium channel complex // inferred from direct assay /// 0008282 // ATP-sensitive potassium channel complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030017 // sarcomere // not recorded /// 0030315 // T-tubule // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0008281 // sulfonylurea receptor activity // inferred from direct assay /// 0008281 // sulfonylurea receptor activity // traceable author statement /// 0008281 // sulfonylurea receptor activity // inferred from electronic annotation /// 0015459 // potassium channel regulator activity // inferred from direct assay /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0019905 // syntaxin binding // inferred from physical interaction /// 0042626 // ATPase activity, coupled to transmembrane movement of substances // inferred from electronic annotation 1398266_a_at D83508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D83508.1 /DB_XREF=gi:1208441 /FEA=FLmRNA /CNT=5 /TID=Rn.10625.1 /TIER=FL /STK=1 /UG=Rn.10625 /LL=114090 /UG_GENE=Egr2 /DEF=Rattus norvegicus mRNA for Krox-20 protein, complete cds. /PROD=Krox-20 protein /FL=gb:AB032420.1 gb:NM_053633.1 gb:U78102.1 gb:D83508.1 D83508 early growth response 2 Egr2 114090 NM_053633 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0007611 // learning or memory // inferred from expression pattern /// 0007622 // rhythmic behavior // inferred from electronic annotation /// 0007622 // rhythmic behavior // not recorded /// 0008045 // motor axon guidance // inferred from electronic annotation /// 0008045 // motor axon guidance // not recorded /// 0014037 // Schwann cell differentiation // inferred from electronic annotation /// 0014037 // Schwann cell differentiation // not recorded /// 0021569 // rhombomere 3 development // inferred from electronic annotation /// 0021569 // rhombomere 3 development // not recorded /// 0021612 // facial nerve structural organization // inferred from electronic annotation /// 0021612 // facial nerve structural organization // not recorded /// 0021660 // rhombomere 3 formation // inferred from electronic annotation /// 0021660 // rhombomere 3 formation // not recorded /// 0021666 // rhombomere 5 formation // inferred from electronic annotation /// 0021666 // rhombomere 5 formation // not recorded /// 0030278 // regulation of ossification // inferred from electronic annotation /// 0030278 // regulation of ossification // not recorded /// 0032868 // response to insulin stimulus // inferred from mutant phenotype /// 0035284 // brain segmentation // inferred from electronic annotation /// 0035284 // brain segmentation // not recorded /// 0042552 // myelination // inferred from electronic annotation /// 0042552 // myelination // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048168 // regulation of neuronal synaptic plasticity // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1398267_at NM_053537 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053537.1 /DB_XREF=gi:16758301 /GEN=Slc22a7 /FEA=FLmRNA /CNT=3 /TID=Rn.10009.1 /TIER=FL /STK=3 /UG=Rn.10009 /LL=89776 /DEF=Rattus norvegicus solute carrier family 22 (organic anion transporter), member 7 (Slc22a7), mRNA. /PROD=solute carrier family 22 (organic aniontransporter), member 7 /FL=gb:L27651.1 gb:NM_053537.1 NM_053537 solute carrier family 22 (organic anion transporter), member 7 Slc22a7 89776 NM_053537 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015711 // organic anion transport // inferred from direct assay /// 0015711 // organic anion transport // not recorded /// 0015711 // organic anion transport // traceable author statement /// 0034220 // ion transmembrane transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0008514 // organic anion transmembrane transporter activity // inferred from direct assay /// 0008514 // organic anion transmembrane transporter activity // not recorded /// 0008514 // organic anion transmembrane transporter activity // traceable author statement /// 0015075 // ion transmembrane transporter activity // inferred from electronic annotation 1398268_at BI296061 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296061 /DB_XREF=gi:14960127 /DB_XREF=UI-R-DK0-cfd-h-06-0-UI.s1 /CLONE=UI-R-DK0-cfd-h-06-0-UI /FEA=FLmRNA /CNT=23 /TID=Rn.1457.1 /TIER=Stack /STK=11 /UG=Rn.1457 /LL=25337 /UG_GENE=Nfyc /UG_TITLE=CCAAT binding factor of CBF-CNFY-C /FL=gb:U17607.1 gb:NM_012866.1 BI296061 nuclear transcription factor-Y gamma Nfyc 25337 NM_012866 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016602 // CCAAT-binding factor complex // inferred from electronic annotation /// 0016602 // CCAAT-binding factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1398269_at NM_053731 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053731.1 /DB_XREF=gi:16758547 /GEN=Ntn1 /FEA=FLmRNA /CNT=10 /TID=Rn.41052.1 /TIER=FL /STK=2 /UG=Rn.41052 /LL=114523 /DEF=Rattus norvegicus netrin 1 (Ntn1), mRNA. /PROD=netrin 1 /FL=gb:AY028417.1 gb:NM_053731.1 NM_053731 netrin 1 Ntn1 114523 NM_053731 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0007409 // axonogenesis // not recorded /// 0007409 // axonogenesis // inferred from electronic annotation /// 0007411 // axon guidance // not recorded /// 0007411 // axon guidance // non-traceable author statement /// 0007411 // axon guidance // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0016337 // cell-cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0030334 // regulation of cell migration // not recorded /// 0030517 // negative regulation of axon extension // inferred from electronic annotation /// 0030517 // negative regulation of axon extension // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0030879 // mammary gland development // not recorded /// 0040023 // establishment of nucleus localization // inferred from electronic annotation /// 0040023 // establishment of nucleus localization // not recorded /// 0045773 // positive regulation of axon extension // inferred from electronic annotation /// 0045773 // positive regulation of axon extension // not recorded /// 0060603 // mammary gland duct morphogenesis // inferred from electronic annotation /// 0060603 // mammary gland duct morphogenesis // not recorded 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from direct assay /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398270_at AA944827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944827 /DB_XREF=gi:3104743 /DB_XREF=EST200326 /CLONE=REMAP63 /FEA=FLmRNA /CNT=16 /TID=Rn.12687.1 /TIER=Stack /STK=6 /UG=Rn.12687 /LL=29373 /UG_GENE=Bmp2 /UG_TITLE=bone morphogenetic protein 2 /FL=gb:NM_017178.1 AA944827 bone morphogenetic protein 2 Bmp2 29373 NM_017178 0001503 // ossification // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001837 // epithelial to mesenchymal transition // not recorded /// 0001837 // epithelial to mesenchymal transition // inferred from electronic annotation /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0001934 // positive regulation of protein phosphorylation // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // inferred from electronic annotation /// 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0003130 // BMP signaling pathway involved in heart induction // inferred from electronic annotation /// 0003130 // BMP signaling pathway involved in heart induction // not recorded /// 0003181 // atrioventricular valve morphogenesis // inferred from electronic annotation /// 0003181 // atrioventricular valve morphogenesis // not recorded /// 0003203 // endocardial cushion morphogenesis // inferred from electronic annotation /// 0003203 // endocardial cushion morphogenesis // not recorded /// 0006954 // inflammatory response // inferred from electronic annotation /// 0006954 // inflammatory response // not recorded /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007219 // Notch signaling pathway // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from direct assay /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010628 // positive regulation of gene expression // not recorded /// 0010628 // positive regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // not recorded /// 0010718 // positive regulation of epithelial to mesenchymal transition // inferred from electronic annotation /// 0010718 // positive regulation of epithelial to mesenchymal transition // not recorded /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // not recorded /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from sequence or structural similarity /// 0010862 // positive regulation of pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0010922 // positive regulation of phosphatase activity // inferred from electronic annotation /// 0010922 // positive regulation of phosphatase activity // not recorded /// 0021537 // telencephalon development // not recorded /// 0021537 // telencephalon development // inferred from electronic annotation /// 0021978 // telencephalon regionalization // inferred from electronic annotation /// 0021978 // telencephalon regionalization // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030177 // positive regulation of Wnt receptor signaling pathway // not recorded /// 0030282 // bone mineralization // not recorded /// 0030282 // bone mineralization // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // not recorded /// 0030509 // BMP signaling pathway // inferred from direct assay /// 0030509 // BMP signaling pathway // not recorded /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0031648 // protein destabilization // inferred from electronic annotation /// 0031648 // protein destabilization // not recorded /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0032582 // negative regulation of gene-specific transcription // inferred from electronic annotation /// 0035051 // cardiac cell differentiation // inferred from electronic annotation /// 0035051 // cardiac cell differentiation // not recorded /// 0035054 // embryonic heart tube anterior/posterior pattern formation // inferred from electronic annotation /// 0035054 // embryonic heart tube anterior/posterior pattern formation // not recorded /// 0040007 // growth // inferred from electronic annotation /// 0042475 // odontogenesis of dentine-containing tooth // not recorded /// 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042482 // positive regulation of odontogenesis // inferred from electronic annotation /// 0042482 // positive regulation of odontogenesis // not recorded /// 0042487 // regulation of odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0042487 // regulation of odontogenesis of dentine-containing tooth // not recorded /// 0042698 // ovulation cycle // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0045165 // cell fate commitment // inferred from electronic annotation /// 0045165 // cell fate commitment // not recorded /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045597 // positive regulation of cell differentiation // not recorded /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045778 // positive regulation of ossification // not recorded /// 0045778 // positive regulation of ossification // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0048711 // positive regulation of astrocyte differentiation // inferred from electronic annotation /// 0048711 // positive regulation of astrocyte differentiation // not recorded /// 0048762 // mesenchymal cell differentiation // not recorded /// 0048762 // mesenchymal cell differentiation // inferred from sequence or structural similarity /// 0048762 // mesenchymal cell differentiation // inferred from electronic annotation /// 0050769 // positive regulation of neurogenesis // inferred from direct assay /// 0051216 // cartilage development // inferred from electronic annotation /// 0055008 // cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055008 // cardiac muscle tissue morphogenesis // not recorded /// 0060039 // pericardium development // inferred from electronic annotation /// 0060039 // pericardium development // not recorded /// 0060128 // adrenocorticotropin hormone secreting cell differentiation // inferred from electronic annotation /// 0060128 // adrenocorticotropin hormone secreting cell differentiation // not recorded /// 0060129 // thyroid-stimulating hormone-secreting cell differentiation // inferred from electronic annotation /// 0060129 // thyroid-stimulating hormone-secreting cell differentiation // not recorded /// 0060317 // cardiac epithelial to mesenchymal transition // inferred from electronic annotation /// 0060317 // cardiac epithelial to mesenchymal transition // not recorded /// 0060389 // pathway-restricted SMAD protein phosphorylation // not recorded /// 0060389 // pathway-restricted SMAD protein phosphorylation // inferred from electronic annotation /// 0060395 // SMAD protein signal transduction // not recorded /// 0060395 // SMAD protein signal transduction // inferred from sequence or structural similarity /// 0060395 // SMAD protein signal transduction // inferred from electronic annotation /// 0060804 // positive regulation of WNT receptor signaling pathway by BMP signaling pathway // not recorded /// 0061036 // positive regulation of cartilage development // inferred from electronic annotation /// 0061036 // positive regulation of cartilage development // not recorded /// 0071363 // cellular response to growth factor stimulus // inferred from electronic annotation /// 0071363 // cellular response to growth factor stimulus // not recorded /// 0071407 // cellular response to organic cyclic substance // inferred from electronic annotation /// 0071407 // cellular response to organic cyclic substance // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0031988 // membrane-bounded vesicle // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0004745 // retinol dehydrogenase activity // inferred from electronic annotation /// 0004745 // retinol dehydrogenase activity // not recorded /// 0005102 // receptor binding // inferred from mutant phenotype /// 0005125 // cytokine activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from direct assay /// 0008083 // growth factor activity // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0016566 // specific transcriptional repressor activity // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // not recorded /// 0019211 // phosphatase activator activity // inferred from electronic annotation /// 0019211 // phosphatase activator activity // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046332 // SMAD binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0070700 // BMP receptor binding // inferred from electronic annotation /// 0070700 // BMP receptor binding // not recorded 1398271_at AF138789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF138789.2 /DB_XREF=gi:7493835 /FEA=FLmRNA /CNT=9 /TID=Rn.53925.1 /TIER=FL /STK=1 /UG=Rn.53925 /LL=56768 /UG_GENE=Pclo /DEF=Rattus norvegicus multidomain presynaptic cytomatrix protein Piccolo mRNA, complete cds, short splice variant. /PROD=multidomain presynaptic cytomatrix proteinPiccolo /FL=gb:AF227534.1 gb:NM_020098.1 gb:AF138789.2 AF138789 piccolo (presynaptic cytomatrix protein) Pclo 56768 NM_001110797 /// NM_020098 0006810 // transport // inferred from electronic annotation /// 0007010 // cytoskeleton organization // not recorded /// 0007010 // cytoskeleton organization // inferred from sequence or structural similarity /// 0016080 // synaptic vesicle targeting // non-traceable author statement /// 0017157 // regulation of exocytosis // not recorded /// 0019933 // cAMP-mediated signaling // not recorded /// 0030073 // insulin secretion // not recorded 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045202 // synapse // not recorded 0005215 // transporter activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005522 // profilin binding // not recorded /// 0005522 // profilin binding // inferred from sequence or structural similarity /// 0005544 // calcium-dependent phospholipid binding // inferred from direct assay /// 0005544 // calcium-dependent phospholipid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398272_at NM_022860 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022860.1 /DB_XREF=gi:12408315 /GEN=Galgt1 /FEA=FLmRNA /CNT=5 /TID=Rn.10119.1 /TIER=FL /STK=2 /UG=Rn.10119 /LL=64828 /DEF=Rattus norvegicus beta-4N-acetylgalactosaminyltransferase (Galgt1), mRNA. /PROD=beta-4N-acetylgalactosaminyltransferase /FL=gb:D17809.1 gb:NM_022860.1 NM_022860 beta-1,4-N-acetyl-galactosaminyl transferase 1 B4galnt1 64828 NM_022860 0001574 // ganglioside biosynthetic process // inferred from electronic annotation /// 0001574 // ganglioside biosynthetic process // not recorded /// 0006687 // glycosphingolipid metabolic process // inferred from electronic annotation /// 0006687 // glycosphingolipid metabolic process // not recorded /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0019915 // lipid storage // inferred from electronic annotation /// 0019915 // lipid storage // not recorded /// 0030259 // lipid glycosylation // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030173 // integral to Golgi membrane // inferred from electronic annotation 0003947 // (N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0008376 // acetylgalactosaminyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016758 // transferase activity, transferring hexosyl groups // inferred from electronic annotation 1398273_at NM_053599 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053599.1 /DB_XREF=gi:16758383 /GEN=Efna1 /FEA=FLmRNA /CNT=5 /TID=Rn.8427.1 /TIER=FL /STK=2 /UG=Rn.8427 /LL=94268 /DEF=Rattus norvegicus ephrin A1 (Efna1), mRNA. /PROD=ephrin A1 /FL=gb:NM_053599.1 gb:D38056.1 NM_053599 ephrin A1 Efna1 94268 NM_053599 0000187 // activation of MAPK activity // inferred from electronic annotation /// 0000187 // activation of MAPK activity // not recorded /// 0001525 // angiogenesis // non-traceable author statement /// 0001525 // angiogenesis // inferred from electronic annotation /// 0014028 // notochord formation // inferred from electronic annotation /// 0014028 // notochord formation // not recorded /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0043535 // regulation of blood vessel endothelial cell migration // inferred from electronic annotation /// 0043535 // regulation of blood vessel endothelial cell migration // not recorded /// 0045765 // regulation of angiogenesis // inferred from electronic annotation /// 0045765 // regulation of angiogenesis // not recorded /// 0048013 // ephrin receptor signaling pathway // inferred from electronic annotation /// 0048013 // ephrin receptor signaling pathway // not recorded /// 0050770 // regulation of axonogenesis // inferred from electronic annotation /// 0050770 // regulation of axonogenesis // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation /// 0046658 // anchored to plasma membrane // inferred from electronic annotation /// 0046658 // anchored to plasma membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046875 // ephrin receptor binding // traceable author statement 1398274_at NM_053675 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053675.1 /DB_XREF=gi:16758487 /GEN=Spata2 /FEA=FLmRNA /CNT=4 /TID=Rn.12563.1 /TIER=FL /STK=2 /UG=Rn.12563 /LL=114210 /DEF=Rattus norvegicus spermatogenesis associated 2 (Spata2), mRNA. /PROD=spermatogenesis associated 2 /FL=gb:AF123651.1 gb:NM_053675.1 NM_053675 spermatogenesis associated 2 Spata2 114210 NM_053675 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1398275_at NM_031055 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031055.1 /DB_XREF=gi:13591992 /GEN=Mmp9 /FEA=FLmRNA /CNT=4 /TID=Rn.10209.1 /TIER=FL /STK=2 /UG=Rn.10209 /LL=81687 /DEF=Rattus norvegicus matrix metalloproteinase 9 (gelatinase B, 92-kDa type IV collagenase) (Mmp9), mRNA. /PROD=matrix metalloproteinase 9 (gelatinase B, 92-kDatype IV collagenase) /FL=gb:NM_031055.1 gb:U36476.1 gb:U24441.1 NM_031055 matrix metallopeptidase 9 Mmp9 81687 NM_031055 0001501 // skeletal system development // not recorded /// 0001503 // ossification // inferred from expression pattern /// 0001666 // response to hypoxia // inferred from expression pattern /// 0002687 // positive regulation of leukocyte migration // inferred from direct assay /// 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // inferred from expression pattern /// 0006508 // proteolysis // not recorded /// 0006508 // proteolysis // inferred from sequence or structural similarity /// 0006979 // response to oxidative stress // inferred from direct assay /// 0007568 // aging // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0008152 // metabolic process // inferred from electronic annotation /// 0009314 // response to radiation // inferred from expression pattern /// 0009408 // response to heat // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0010033 // response to organic substance // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016049 // cell growth // inferred from expression pattern /// 0019087 // transformation of host cell by virus // inferred from direct assay /// 0030198 // extracellular matrix organization // not recorded /// 0030574 // collagen catabolic process // inferred from electronic annotation /// 0030574 // collagen catabolic process // not recorded /// 0031915 // positive regulation of synaptic plasticity // inferred from mutant phenotype /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0033189 // response to vitamin A // inferred from expression pattern /// 0034612 // response to tumor necrosis factor // inferred from expression pattern /// 0035094 // response to nicotine // inferred from expression pattern /// 0042493 // response to drug // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // not recorded /// 0045471 // response to ethanol // inferred from expression pattern /// 0045766 // positive regulation of angiogenesis // inferred from mutant phenotype /// 0048771 // tissue remodeling // inferred from direct assay /// 0051549 // positive regulation of keratinocyte migration // not recorded /// 0060033 // anatomical structure regression // inferred from expression pattern /// 0071345 // cellular response to cytokine stimulus // inferred from expression pattern /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern /// 0071404 // cellular response to low-density lipoprotein stimulus // inferred from expression pattern /// 0071460 // cellular response to cell-matrix adhesion // inferred from expression pattern /// 0071460 // cellular response to cell-matrix adhesion // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from sequence or structural similarity /// 0031012 // extracellular matrix // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0001968 // fibronectin binding // inferred from physical interaction /// 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // not recorded /// 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendopeptidase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008237 // metallopeptidase activity // inferred from direct assay /// 0008237 // metallopeptidase activity // traceable author statement /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1398276_at NM_022282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022282.1 /DB_XREF=gi:11560112 /GEN=Dlg2 /FEA=FLmRNA /CNT=3 /TID=Rn.1965.1 /TIER=FL /STK=2 /UG=Rn.1965 /LL=64053 /DEF=Rattus norvegicus discs, large (Drosophila) homolog 2 (chapsyn-110) (Dlg2), mRNA. /PROD=discs, large (Drosophila) homolog 2(chapsyn-110) /FL=gb:NM_022282.1 gb:U49049.1 NM_022282 discs, large homolog 2 (Drosophila) Dlg2 64053 NM_022282 0007268 // synaptic transmission // not recorded /// 0019233 // sensory perception of pain // not recorded /// 0043113 // receptor clustering // inferred from mutant phenotype /// 0045161 // neuronal ion channel clustering // inferred from mutant phenotype 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0014069 // postsynaptic density // traceable author statement /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0045211 // postsynaptic membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // traceable author statement /// 0030165 // PDZ domain binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1398277_at NM_024486 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024486.1 /DB_XREF=gi:13324701 /GEN=Acvr1 /FEA=FLmRNA /CNT=3 /TID=Rn.10692.1 /TIER=FL /STK=2 /UG=Rn.10692 /LL=79558 /DEF=Rattus norvegicus activin type I receptor (Acvr1), mRNA. /PROD=activin type I receptor /FL=gb:L19341.1 gb:NM_024486.1 NM_024486 activin A receptor, type I Acvr1 79558 NM_024486 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0001569 // patterning of blood vessels // inferred from electronic annotation /// 0001569 // patterning of blood vessels // not recorded /// 0001655 // urogenital system development // inferred from mutant phenotype /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001702 // gastrulation with mouth forming second // inferred from electronic annotation /// 0001702 // gastrulation with mouth forming second // not recorded /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0001707 // mesoderm formation // not recorded /// 0001755 // neural crest cell migration // inferred from electronic annotation /// 0001755 // neural crest cell migration // not recorded /// 0002526 // acute inflammatory response // inferred from electronic annotation /// 0002526 // acute inflammatory response // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0006468 // protein phosphorylation // not recorded /// 0006468 // protein phosphorylation // traceable author statement /// 0007165 // signal transduction // not recorded /// 0007178 // transmembrane receptor protein serine/threonine kinase signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from mutant phenotype /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007281 // germ cell development // inferred from electronic annotation /// 0007281 // germ cell development // not recorded /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // not recorded /// 0007369 // gastrulation // not recorded /// 0007369 // gastrulation // inferred from electronic annotation /// 0007498 // mesoderm development // inferred from electronic annotation /// 0007498 // mesoderm development // not recorded /// 0007507 // heart development // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0009968 // negative regulation of signal transduction // inferred from electronic annotation /// 0009968 // negative regulation of signal transduction // not recorded /// 0016310 // phosphorylation // not recorded /// 0030278 // regulation of ossification // inferred from electronic annotation /// 0030278 // regulation of ossification // not recorded /// 0030501 // positive regulation of bone mineralization // inferred from electronic annotation /// 0030501 // positive regulation of bone mineralization // not recorded /// 0030509 // BMP signaling pathway // inferred from electronic annotation /// 0030509 // BMP signaling pathway // not recorded /// 0032926 // negative regulation of activin receptor signaling pathway // inferred from electronic annotation /// 0032926 // negative regulation of activin receptor signaling pathway // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0048641 // regulation of skeletal muscle tissue development // inferred from expression pattern /// 0051145 // smooth muscle cell differentiation // inferred from electronic annotation /// 0051145 // smooth muscle cell differentiation // not recorded /// 0060037 // pharyngeal system development // inferred from electronic annotation /// 0060037 // pharyngeal system development // not recorded /// 0071385 // cellular response to glucocorticoid stimulus // inferred from expression pattern 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0045177 // apical part of cell // inferred from electronic annotation /// 0045177 // apical part of cell // not recorded /// 0048179 // activin receptor complex // inferred from direct assay /// 0048179 // activin receptor complex // inferred from mutant phenotype /// 0048179 // activin receptor complex // not recorded /// 0048179 // activin receptor complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // traceable author statement /// 0004675 // transmembrane receptor protein serine/threonine kinase activity // inferred from electronic annotation /// 0004702 // receptor signaling protein serine/threonine kinase activity // inferred from mutant phenotype /// 0004702 // receptor signaling protein serine/threonine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005024 // transforming growth factor beta receptor activity // inferred from electronic annotation /// 0005025 // transforming growth factor beta receptor activity, type I // not recorded /// 0005025 // transforming growth factor beta receptor activity, type I // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016361 // activin receptor activity, type I // inferred from direct assay /// 0016361 // activin receptor activity, type I // inferred from mutant phenotype /// 0016361 // activin receptor activity, type I // not recorded /// 0016361 // activin receptor activity, type I // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019838 // growth factor binding // not recorded /// 0019838 // growth factor binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046332 // SMAD binding // inferred from mutant phenotype /// 0046332 // SMAD binding // not recorded /// 0046332 // SMAD binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048185 // activin binding // inferred from electronic annotation /// 0048185 // activin binding // not recorded /// 0050431 // transforming growth factor beta binding // inferred from electronic annotation /// 0050431 // transforming growth factor beta binding // not recorded 1398278_at NM_012629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012629.1 /DB_XREF=gi:6981403 /GEN=Prl /FEA=FLmRNA /CNT=3 /TID=Rn.9759.1 /TIER=FL /STK=2 /UG=Rn.9759 /LL=24683 /DEF=Rattus norvegicus Prolactin (Prl), mRNA. /PROD=prolactin /FL=gb:AF022935.1 gb:NM_012629.1 NM_012629 prolactin Prl 24683 NM_012629 0007262 // STAT protein nuclear translocation // inferred from electronic annotation /// 0007262 // STAT protein nuclear translocation // not recorded /// 0007567 // parturition // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0007595 // lactation // traceable author statement /// 0007595 // lactation // inferred from electronic annotation /// 0007623 // circadian rhythm // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0030278 // regulation of ossification // inferred from mutant phenotype /// 0030879 // mammary gland development // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032870 // cellular response to hormone stimulus // inferred from expression pattern /// 0033555 // multicellular organismal response to stress // inferred from expression pattern /// 0040014 // regulation of multicellular organism growth // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0042698 // ovulation cycle // inferred from expression pattern /// 0045471 // response to ethanol // inferred from expression pattern /// 0046425 // regulation of JAK-STAT cascade // not recorded /// 0046425 // regulation of JAK-STAT cascade // inferred from electronic annotation /// 0046427 // positive regulation of JAK-STAT cascade // inferred from electronic annotation /// 0046427 // positive regulation of JAK-STAT cascade // not recorded /// 0050679 // positive regulation of epithelial cell proliferation // inferred from direct assay 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from electronic annotation /// 0030141 // stored secretory granule // inferred from direct assay /// 0030141 // stored secretory granule // not recorded /// 0030141 // stored secretory granule // inferred from electronic annotation 0005148 // prolactin receptor binding // traceable author statement /// 0005179 // hormone activity // traceable author statement /// 0005179 // hormone activity // inferred from electronic annotation 1398279_at NM_053787 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053787.1 /DB_XREF=gi:16758627 /GEN=Ecac1 /FEA=FLmRNA /CNT=2 /TID=Rn.12948.1 /TIER=FL /STK=2 /UG=Rn.12948 /LL=116469 /DEF=Rattus norvegicus epithelial calcium channel 1 (Ecac1), mRNA. /PROD=epithelial calcium channel 1 /FL=gb:AF209196.1 gb:NM_053787.1 NM_053787 transient receptor potential cation channel, subfamily V, member 5 Trpv5 116469 NM_053787 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // not recorded /// 0006816 // calcium ion transport // inferred from sequence or structural similarity /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0051262 // protein tetramerization // not recorded /// 0051262 // protein tetramerization // inferred from sequence or structural similarity /// 0051262 // protein tetramerization // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded 0005216 // ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferred from direct assay /// 0005262 // calcium channel activity // not recorded /// 0005262 // calcium channel activity // inferred from sequence or structural similarity /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398280_at NM_023958 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023958.1 /DB_XREF=gi:13027403 /GEN=Impg1 /FEA=FLmRNA /CNT=2 /TID=Rn.64488.1 /TIER=FL /STK=2 /UG=Rn.64488 /LL=66014 /DEF=Rattus norvegicus interphotoreceptor matrix proteoglycan 1 (Impg1), mRNA. /PROD=interphotoreceptor matrix proteoglycan 1 /FL=gb:AB047843.1 gb:NM_023958.1 NM_023958 interphotoreceptor matrix proteoglycan 1 Impg1 66014 NM_023958 0005576 // extracellular region // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1398281_at NM_031329 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031329.1 /DB_XREF=gi:13786153 /GEN=Ocln /FEA=FLmRNA /CNT=2 /TID=Rn.31429.1 /TIER=FL /STK=2 /UG=Rn.31429 /LL=83497 /DEF=Rattus norvegicus occludin (Ocln), mRNA. /PROD=occludin /FL=gb:AB016425.1 gb:NM_031329.1 NM_031329 occludin Ocln 83497 NM_031329 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0046498 // S-adenosylhomocysteine metabolic process // inferred from direct assay /// 0046500 // S-adenosylmethionine metabolic process // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // not recorded /// 0005923 // tight junction // non-traceable author statement /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // not recorded /// 0030054 // cell junction // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008119 // thiopurine S-methyltransferase activity // inferred from direct assay /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from direct assay 1398282_at NM_053902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053902.1 /DB_XREF=gi:16758775 /GEN=Kynu /FEA=FLmRNA /CNT=2 /TID=Rn.10575.1 /TIER=FL /STK=2 /UG=Rn.10575 /LL=116682 /DEF=Rattus norvegicus kynureninase (L-kynurenine hydrolase) (Kynu), mRNA. /PROD=kynureninase (L-kynurenine hydrolase) /FL=gb:NM_053902.1 gb:U68168.1 NM_053902 kynureninase (L-kynurenine hydrolase) Kynu 116682 NM_053902 0006569 // tryptophan catabolic process // inferred from electronic annotation /// 0006569 // tryptophan catabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0009435 // NAD biosynthetic process // inferred from electronic annotation /// 0019363 // pyridine nucleotide biosynthetic process // inferred from electronic annotation /// 0019441 // tryptophan catabolic process to kynurenine // inferred from direct assay /// 0019442 // tryptophan catabolic process to acetyl-CoA // inferred from direct assay /// 0019805 // quinolinate biosynthetic process // inferred from electronic annotation /// 0019805 // quinolinate biosynthetic process // not recorded /// 0034341 // response to interferon-gamma // inferred from electronic annotation /// 0034341 // response to interferon-gamma // not recorded /// 0034516 // response to vitamin B6 // inferred from electronic annotation /// 0034516 // response to vitamin B6 // not recorded /// 0043420 // anthranilate metabolic process // inferred from electronic annotation /// 0043420 // anthranilate metabolic process // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005625 // soluble fraction // not recorded /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from direct assay /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from mutant phenotype /// 0030429 // kynureninase activity // inferred from direct assay /// 0030429 // kynureninase activity // inferred from electronic annotation /// 0030429 // kynureninase activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1398283_at NM_022253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022253.1 /DB_XREF=gi:11560062 /GEN=Cbp /FEA=FLmRNA /CNT=2 /TID=Rn.53982.1 /TIER=FL /STK=2 /UG=Rn.53982 /LL=64019 /DEF=Rattus norvegicus Csk binding protein (Cbp), mRNA. /PROD=Csk binding protein /FL=gb:AB038038.1 gb:NM_022253.1 NM_022253 Csk binding protein Cbp 64019 NM_022253 0007165 // signal transduction // traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005068 // transmembrane receptor protein tyrosine kinase adaptor protein activity // traceable author statement 1398284_at NM_053678 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053678.1 /DB_XREF=gi:16758429 /GEN=Rax /FEA=FLmRNA /CNT=2 /TID=Rn.48800.1 /TIER=FL /STK=2 /UG=Rn.48800 /LL=114213 /DEF=Rattus norvegicus retina and anterior neural fold homeobox (Rax), mRNA. /PROD=retina and anterior neural fold homeobox /FL=gb:NM_053678.1 gb:AF135839.1 NM_053678 retina and anterior neural fold homeobox Rax 114213 NM_053678 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0021854 // hypothalamus development // inferred from electronic annotation /// 0021854 // hypothalamus development // not recorded /// 0043010 // camera-type eye development // inferred from electronic annotation /// 0043010 // camera-type eye development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0060173 // limb development // inferred from electronic annotation /// 0060173 // limb development // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1398285_at NM_017135 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017135.1 /DB_XREF=gi:8392884 /GEN=Ak4 /FEA=FLmRNA /CNT=2 /TID=Rn.44288.1 /TIER=FL /STK=2 /UG=Rn.44288 /LL=29223 /DEF=Rattus norvegicus Adenylate kinase 4 (Ak4), mRNA. /PROD=Adenylate kinase 4 /FL=gb:D87809.1 gb:NM_017135.1 NM_017135 adenylate kinase 3-like 1 Ak3l1 29223 NM_017135 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from expression pattern /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004017 // adenylate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016776 // phosphotransferase activity, phosphate group as acceptor // inferred from electronic annotation /// 0019201 // nucleotide kinase activity // inferred from electronic annotation /// 0019205 // nucleobase, nucleoside, nucleotide kinase activity // inferred from electronic annotation 1398286_at M64755 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M64755.1 /DB_XREF=gi:847652 /FEA=FLmRNA /CNT=18 /TID=Rn.43232.1 /TIER=FL /STK=1 /UG=Rn.43232 /LL=60356 /UG_GENE=Csad /DEF=Rattus norvegicus cysteine sulfinic acid decarboxylase mRNA, complete cds. /PROD=cysteine sulfinic acid decarboxylase /FL=gb:M64755.1 gb:NM_021750.1 M64755 cysteine sulfinic acid decarboxylase Csad 60356 NM_001134454 /// NM_021750 0019752 // carboxylic acid metabolic process // inferred from electronic annotation /// 0042412 // taurine biosynthetic process // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0004782 // sulfinoalanine decarboxylase activity // inferred from direct assay /// 0004782 // sulfinoalanine decarboxylase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation 1398287_at NM_013085 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013085.1 /DB_XREF=gi:6981367 /GEN=Plau /FEA=FLmRNA /CNT=9 /TID=Rn.6064.1 /TIER=FL /STK=1 /UG=Rn.6064 /LL=25619 /DEF=Rattus norvegicus Urinary plasminogen activator, urokinase (Plau), mRNA. /PROD=urinary plasminogen activator, urokinase /FL=gb:NM_013085.1 NM_013085 plasminogen activator, urokinase Plau 25619 NM_013085 0001525 // angiogenesis // inferred from mutant phenotype /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0006508 // proteolysis // traceable author statement /// 0006508 // proteolysis // inferred from electronic annotation /// 0006935 // chemotaxis // traceable author statement /// 0007165 // signal transduction // traceable author statement /// 0007566 // embryo implantation // inferred from expression pattern /// 0010469 // regulation of receptor activity // inferred from electronic annotation /// 0010469 // regulation of receptor activity // not recorded /// 0014909 // smooth muscle cell migration // not recorded /// 0014909 // smooth muscle cell migration // inferred from electronic annotation /// 0014910 // regulation of smooth muscle cell migration // inferred from electronic annotation /// 0014910 // regulation of smooth muscle cell migration // not recorded /// 0033628 // regulation of cell adhesion mediated by integrin // inferred from electronic annotation /// 0033628 // regulation of cell adhesion mediated by integrin // not recorded /// 0042060 // wound healing // inferred from mutant phenotype /// 0042127 // regulation of cell proliferation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // not recorded /// 0043403 // skeletal muscle tissue regeneration // inferred from mutant phenotype /// 0048514 // blood vessel morphogenesis // inferred from expression pattern 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1398288_at BF552873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF552873 /DB_XREF=gi:11662603 /DB_XREF=UI-R-C2-nn-d-09-0-UI.r1 /CLONE=UI-R-C2-nn-d-09-0-UI /FEA=FLmRNA /CNT=5 /TID=Rn.10178.1 /TIER=ConsEnd /STK=0 /UG=Rn.10178 /LL=24182 /UG_GENE=Agtr2 /UG_TITLE=Angiotensin receptor 2 /FL=gb:NM_012494.1 BF552873 angiotensin II receptor, type 2 Agtr2 24182 NM_012494 0002033 // vasodilation by angiotensin involved in regulation of systemic arterial blood pressure // not recorded /// 0002035 // brain renin-angiotensin system // not recorded /// 0006883 // cellular sodium ion homeostasis // inferred from mutant phenotype /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // traceable author statement /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007610 // behavior // not recorded /// 0010243 // response to organic nitrogen // inferred from expression pattern /// 0030147 // natriuresis // inferred from mutant phenotype /// 0030182 // neuron differentiation // traceable author statement /// 0032304 // negative regulation of icosanoid secretion // inferred from mutant phenotype /// 0032516 // positive regulation of phosphoprotein phosphatase activity // not recorded /// 0042990 // regulation of transcription factor import into nucleus // inferred from direct assay /// 0043065 // positive regulation of apoptosis // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0045909 // positive regulation of vasodilation // inferred from mutant phenotype /// 0045909 // positive regulation of vasodilation // not recorded /// 0045909 // positive regulation of vasodilation // traceable author statement /// 0051387 // negative regulation of nerve growth factor receptor signaling pathway // not recorded /// 0071549 // cellular response to dexamethasone stimulus // inferred from direct assay /// 0090190 // positive regulation of branching involved in ureteric bud morphogenesis // inferred from mutant phenotype 0005886 // plasma membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0001965 // G-protein alpha-subunit binding // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004945 // angiotensin type II receptor activity // not recorded /// 0004945 // angiotensin type II receptor activity // traceable author statement /// 0004945 // angiotensin type II receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // inferred from physical interaction /// 0017046 // peptide hormone binding // inferred from mutant phenotype 1398289_a_at NM_030999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030999.1 /DB_XREF=gi:13591891 /GEN=Crhr1 /FEA=FLmRNA /CNT=5 /TID=Rn.10499.1 /TIER=FL /STK=1 /UG=Rn.10499 /LL=58959 /DEF=Rattus norvegicus corticotropin releasing hormone receptor (Crhr1), mRNA. /PROD=corticotropin releasing hormone receptor /FL=gb:NM_030999.1 gb:L25438.1 NM_030999 corticotropin releasing hormone receptor 1 Crhr1 58959 NM_030999 0001666 // response to hypoxia // inferred from mutant phenotype /// 0006950 // response to stress // inferred from mutant phenotype /// 0006950 // response to stress // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007188 // G-protein signaling, coupled to cAMP nucleotide second messenger // inferred from direct assay /// 0007189 // activation of adenylate cyclase activity by G-protein signaling pathway // inferred from direct assay /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0007218 // neuropeptide signaling pathway // inferred from direct assay /// 0007610 // behavior // not recorded /// 0007610 // behavior // inferred from electronic annotation /// 0007613 // memory // inferred from mutant phenotype /// 0008542 // visual learning // inferred from mutant phenotype /// 0032099 // negative regulation of appetite // inferred from mutant phenotype /// 0042755 // eating behavior // inferred from mutant phenotype /// 0043526 // neuroprotection // inferred from mutant phenotype /// 0048167 // regulation of synaptic plasticity // inferred from mutant phenotype /// 0048266 // behavioral response to pain // inferred from mutant phenotype 0005771 // multivesicular body // inferred from direct assay /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0031982 // vesicle // inferred from direct assay /// 0033267 // axon part // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay /// 0045177 // apical part of cell // inferred from direct assay 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from direct assay /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // traceable author statement /// 0015056 // corticotrophin-releasing factor receptor activity // inferred from electronic annotation /// 0015056 // corticotrophin-releasing factor receptor activity // not recorded /// 0042277 // peptide binding // inferred from physical interaction /// 0043404 // corticotropin-releasing hormone receptor activity // inferred from direct assay /// 0051424 // corticotropin-releasing hormone binding // inferred from direct assay 1398290_at AF287301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF287301.1 /DB_XREF=gi:11177511 /GEN=Kcnk13 /FEA=FLmRNA /CNT=3 /TID=Rn.53793.1 /TIER=FL /STK=1 /UG=Rn.53793 /LL=64120 /DEF=Rattus norvegicus tandem pore domain potassium channel THIK-1 (Kcnk13) mRNA, complete cds. /PROD=tandem pore domain potassium channel THIK-1 /FL=gb:NM_022293.1 gb:AF287301.1 AF287301 potassium channel, subfamily K, member 13 Kcnk13 64120 NM_022293 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005267 // potassium channel activity // inferred from electronic annotation 1398291_at NM_030840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_030840.1 /DB_XREF=gi:13540645 /GEN=Pres /FEA=FLmRNA /CNT=2 /TID=Rn.64631.1 /TIER=FL /STK=1 /UG=Rn.64631 /LL=80980 /DEF=Rattus norvegicus prestin (Pres), mRNA. /PROD=prestin /FL=gb:NM_030840.1 NM_030840 solute carrier family 26, member 5 (prestin) Slc26a5 83819 NM_030840 0006810 // transport // inferred from electronic annotation /// 0007605 // sensory perception of sound // inferred from electronic annotation /// 0007605 // sensory perception of sound // not recorded /// 0008272 // sulfate transport // inferred from electronic annotation /// 0008360 // regulation of cell shape // inferred from electronic annotation /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042391 // regulation of membrane potential // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // not recorded /// 0016328 // lateral plasma membrane // inferred from direct assay /// 0016328 // lateral plasma membrane // not recorded /// 0016328 // lateral plasma membrane // inferred from electronic annotation 0003774 // motor activity // traceable author statement /// 0003774 // motor activity // inferred from electronic annotation /// 0005215 // transporter activity // inferred from electronic annotation /// 0008271 // secondary active sulfate transmembrane transporter activity // inferred from electronic annotation /// 0030507 // spectrin binding // inferred from electronic annotation /// 0030507 // spectrin binding // not recorded 1398292_at NM_022218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022218.1 /DB_XREF=gi:11968161 /GEN=Cmklr1 /FEA=FLmRNA /CNT=2 /TID=Rn.44465.1 /TIER=FL /STK=1 /UG=Rn.44465 /LL=60669 /DEF=Rattus norvegicus chemokine-like receptor 1 (Cmklr1), mRNA. /PROD=G-protein coupled chemoattractant-like receptor /FL=gb:NM_022218.1 NM_022218 chemokine-like receptor 1 Cmklr1 60669 NM_022218 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0001637 // G-protein chemoattractant receptor activity // traceable author statement /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation 1398293_a_at U94321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U94321.1 /DB_XREF=gi:2055414 /FEA=FLmRNA /CNT=1 /TID=Rn.74241.2 /TIER=FL /STK=1 /UG=Rn.74241 /LL=84022 /UG_GENE=Ghsr /DEF=Rattus norvegicus growth hormone secretagogue receptor type 1a mRNA, complete cds. /PROD=growth hormone secretagogue receptor type 1a /FL=gb:U94321.1 U94321 growth hormone secretagogue receptor Ghsr 84022 NM_032075 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from direct assay /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from sequence or structural similarity /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0008154 // actin polymerization or depolymerization // not recorded /// 0008154 // actin polymerization or depolymerization // inferred from sequence or structural similarity /// 0008154 // actin polymerization or depolymerization // inferred from electronic annotation /// 0008343 // adult feeding behavior // not recorded /// 0008343 // adult feeding behavior // inferred from sequence or structural similarity /// 0009725 // response to hormone stimulus // not recorded /// 0009725 // response to hormone stimulus // inferred from sequence or structural similarity /// 0009725 // response to hormone stimulus // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0009755 // hormone-mediated signaling pathway // inferred from sequence or structural similarity /// 0009755 // hormone-mediated signaling pathway // inferred from electronic annotation /// 0030252 // growth hormone secretion // inferred from electronic annotation /// 0030252 // growth hormone secretion // not recorded /// 0032094 // response to food // inferred from electronic annotation /// 0032094 // response to food // not recorded /// 0032100 // positive regulation of appetite // not recorded /// 0032100 // positive regulation of appetite // inferred from sequence or structural similarity /// 0032691 // negative regulation of interleukin-1 beta production // not recorded /// 0032691 // negative regulation of interleukin-1 beta production // inferred from sequence or structural similarity /// 0032691 // negative regulation of interleukin-1 beta production // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // not recorded /// 0040018 // positive regulation of multicellular organism growth // not recorded /// 0040018 // positive regulation of multicellular organism growth // inferred from sequence or structural similarity /// 0040018 // positive regulation of multicellular organism growth // inferred from electronic annotation /// 0042536 // negative regulation of tumor necrosis factor biosynthetic process // not recorded /// 0042536 // negative regulation of tumor necrosis factor biosynthetic process // inferred from sequence or structural similarity /// 0042536 // negative regulation of tumor necrosis factor biosynthetic process // inferred from electronic annotation /// 0043134 // regulation of hindgut contraction // inferred from mutant phenotype /// 0043568 // positive regulation of insulin-like growth factor receptor signaling pathway // inferred from electronic annotation /// 0043568 // positive regulation of insulin-like growth factor receptor signaling pathway // not recorded /// 0045409 // negative regulation of interleukin-6 biosynthetic process // not recorded /// 0045409 // negative regulation of interleukin-6 biosynthetic process // inferred from sequence or structural similarity /// 0045409 // negative regulation of interleukin-6 biosynthetic process // inferred from electronic annotation /// 0045923 // positive regulation of fatty acid metabolic process // inferred from mutant phenotype /// 0046676 // negative regulation of insulin secretion // inferred from direct assay /// 0046697 // decidualization // not recorded /// 0046697 // decidualization // inferred from sequence or structural similarity /// 0046697 // decidualization // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // not recorded /// 0050728 // negative regulation of inflammatory response // inferred from sequence or structural similarity /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0051963 // regulation of synaptogenesis // inferred from electronic annotation /// 0051963 // regulation of synaptogenesis // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0043005 // neuron projection // inferred from sequence or structural similarity /// 0043005 // neuron projection // inferred from electronic annotation /// 0045121 // membrane raft // not recorded /// 0045121 // membrane raft // inferred from sequence or structural similarity /// 0045121 // membrane raft // inferred from electronic annotation 0001616 // growth hormone secretagogue receptor activity // inferred from direct assay /// 0001616 // growth hormone secretagogue receptor activity // inferred from mutant phenotype /// 0001616 // growth hormone secretagogue receptor activity // not recorded /// 0001616 // growth hormone secretagogue receptor activity // inferred from sequence or structural similarity /// 0001616 // growth hormone secretagogue receptor activity // traceable author statement /// 0001616 // growth hormone secretagogue receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // not recorded /// 0004930 // G-protein coupled receptor activity // inferred from sequence or structural similarity /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005131 // growth hormone receptor binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0016520 // growth hormone-releasing hormone receptor activity // not recorded /// 0016520 // growth hormone-releasing hormone receptor activity // inferred from sequence or structural similarity /// 0016520 // growth hormone-releasing hormone receptor activity // inferred from electronic annotation /// 0017046 // peptide hormone binding // inferred from mutant phenotype /// 0042562 // hormone binding // inferred from physical interaction 1398294_at NM_031005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031005.1 /DB_XREF=gi:13591901 /GEN=Actn1 /FEA=FLmRNA /CNT=34 /TID=Rn.6401.1 /TIER=FL+Stack /STK=18 /UG=Rn.6401 /LL=81634 /DEF=Rattus norvegicus actinin, alpha 1 (Actn1), mRNA. /PROD=actinin, alpha 1 /FL=gb:NM_031005.1 gb:AF115386.1 NM_031005 actinin, alpha 1 Actn1 81634 NM_031005 0048041 // focal adhesion assembly // not recorded /// 0051017 // actin filament bundle assembly // inferred from electronic annotation /// 0051017 // actin filament bundle assembly // not recorded /// 0051271 // negative regulation of cellular component movement // not recorded 0001725 // stress fiber // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005925 // focal adhesion // not recorded /// 0015629 // actin cytoskeleton // not recorded /// 0030018 // Z disc // inferred from electronic annotation /// 0030018 // Z disc // not recorded /// 0030864 // cortical actin cytoskeleton // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017166 // vinculin binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0051015 // actin filament binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded 1398295_at NM_031684 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031684.1 /DB_XREF=gi:13928947 /GEN=Slc29a1 /FEA=FLmRNA /CNT=20 /TID=Rn.5814.1 /TIER=FL+Stack /STK=14 /UG=Rn.5814 /LL=63997 /DEF=Rattus norvegicus solute carrier family 29 (nucleoside transporters), member 1 (Slc29a1), mRNA. /PROD=solute carrier family 29 (nucleosidetransporters), member 1 /FL=gb:NM_031684.1 gb:AF015304.1 NM_031684 solute carrier family 29 (nucleoside transporters), member 1 Slc29a1 63997 NM_031684 0006810 // transport // inferred from electronic annotation /// 0007595 // lactation // inferred from expression pattern /// 0015858 // nucleoside transport // inferred from direct assay /// 0015858 // nucleoside transport // not recorded /// 0015858 // nucleoside transport // inferred from electronic annotation /// 0015862 // uridine transport // inferred from mutant phenotype /// 0030431 // sleep // inferred from mutant phenotype /// 0055085 // transmembrane transport // not recorded /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from mutant phenotype /// 0071333 // cellular response to glucose stimulus // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from expression pattern 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005337 // nucleoside transmembrane transporter activity // inferred from direct assay /// 0005337 // nucleoside transmembrane transporter activity // not recorded /// 0005337 // nucleoside transmembrane transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398296_at NM_032615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032615.1 /DB_XREF=gi:14249135 /GEN=Mir16 /FEA=FLmRNA /CNT=22 /TID=Rn.3731.1 /TIER=FL+Stack /STK=8 /UG=Rn.3731 /LL=60418 /DEF=Rattus norvegicus membrane interacting protein of RGS16 (Mir16), mRNA. /PROD=membrane interacting protein of RGS16 /FL=gb:AF212861.1 gb:NM_032615.1 NM_032615 glycerophosphodiester phosphodiesterase 1 Gde1 60418 NM_032615 0006071 // glycerol metabolic process // inferred from electronic annotation /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // non-traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0008081 // phosphoric diester hydrolase activity // inferred from electronic annotation /// 0008889 // glycerophosphodiester phosphodiesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0047395 // glycerophosphoinositol glycerophosphodiesterase activity // inferred from electronic annotation 1398297_at NM_021746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021746.1 /DB_XREF=gi:11120691 /GEN=Mapk12 /FEA=FLmRNA /CNT=12 /TID=Rn.42944.1 /TIER=FL+Stack /STK=6 /UG=Rn.42944 /LL=60352 /DEF=Rattus norvegicus mitogen-activated protein kinase 12 (Mapk12), mRNA. /PROD=SAP kinase-3 /FL=gb:NM_021746.1 NM_021746 mitogen-activated protein kinase 12 Mapk12 60352 NM_021746 0005978 // glycogen biosynthetic process // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded /// 0045445 // myoblast differentiation // not recorded /// 0045445 // myoblast differentiation // inferred from electronic annotation /// 0045786 // negative regulation of cell cycle // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005964 // phosphorylase kinase complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // not recorded /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004689 // phosphorylase kinase activity // inferred from electronic annotation /// 0004707 // MAP kinase activity // inferred from direct assay /// 0004707 // MAP kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398298_at NM_012852 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012852.1 /DB_XREF=gi:6981055 /GEN=Htr1d /FEA=FLmRNA /CNT=5 /TID=Rn.34834.1 /TIER=FL /STK=1 /UG=Rn.34834 /LL=25323 /DEF=Rattus norvegicus 5 - Hydroxytryptamine (serotonin) receptor 1D (Htr1d), mRNA. /PROD=5 - Hydroxytryptamine (serotonin) receptor 1D /FL=gb:NM_012852.1 NM_012852 5-hydroxytryptamine (serotonin) receptor 1D Htr1d 25323 NM_012852 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0009636 // response to toxin // inferred from electronic annotation /// 0009636 // response to toxin // not recorded /// 0014827 // intestine smooth muscle contraction // inferred from electronic annotation /// 0014827 // intestine smooth muscle contraction // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // inferred from electronic annotation /// 0004993 // serotonin receptor activity // not recorded /// 0051378 // serotonin binding // inferred from electronic annotation /// 0051378 // serotonin binding // not recorded 1398299_at NM_023982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023982.1 /DB_XREF=gi:13027441 /GEN=Gtrap48 /FEA=FLmRNA /CNT=3 /TID=Rn.64568.1 /TIER=FL /STK=0 /UG=Rn.64568 /LL=78966 /DEF=Rattus norvegicus RhoGEF glutamate transport modulator GTRAP48 (Gtrap48), mRNA. /PROD=RhoGEF glutamate transport modulator GTRAP48 /FL=gb:NM_023982.1 gb:AF225961.1 NM_023982 Rho guanine nucleotide exchange factor (GEF) 11 Arhgef11 78966 NM_023982 0001505 // regulation of neurotransmitter levels // traceable author statement /// 0006915 // apoptosis // not recorded /// 0007186 // G-protein coupled receptor protein signaling pathway // not recorded /// 0007266 // Rho protein signal transduction // not recorded /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0001664 // G-protein-coupled receptor binding // not recorded /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1398300_at BI303655 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303655 /DB_XREF=gi:14979935 /DB_XREF=UI-R-DQ0-cja-p-02-0-UI.s1 /CLONE=UI-R-DQ0-cja-p-02-0-UI /FEA=FLmRNA /CNT=31 /TID=Rn.5041.1 /TIER=Stack /STK=10 /UG=Rn.5041 /LL=25390 /UG_GENE=Atp1b3 /UG_TITLE=ATPase, Na+K+ transporting, beta polypeptide 3 /FL=gb:D84450.1 gb:NM_012913.1 BI303655 ATPase, Na+/K+ transporting, beta 3 polypeptide Atp1b3 25390 NM_012913 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from direct assay /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from direct assay /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0030001 // metal ion transport // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005890 // sodium:potassium-exchanging ATPase complex // inferred from direct assay /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0005391 // sodium:potassium-exchanging ATPase activity // inferred by curator /// 0005391 // sodium:potassium-exchanging ATPase activity // inferred from direct assay /// 0005391 // sodium:potassium-exchanging ATPase activity // traceable author statement /// 0005391 // sodium:potassium-exchanging ATPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398301_at AI009003 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009003 /DB_XREF=gi:4132978 /DB_XREF=EST203454 /CLONE=REMBH04 /FEA=FLmRNA /CNT=43 /TID=Rn.1439.1 /TIER=Stack /STK=12 /UG=Rn.1439 /LL=58927 /UG_GENE=Rpl36 /UG_TITLE=ribosomal protein L36 /FL=gb:NM_022504.1 AI009003 ribosomal protein L36-like /// ribosomal protein L36-like /// ribosomal protein L36-like /// ribosomal protein L36 LOC100359616 /// LOC100360439 /// LOC100361060 /// Rpl36 100359616 /// 100360439 /// 100361060 /// 58927 NM_022504 /// XM_002724779 /// XM_002725661 /// XM_002726669 /// XM_002727936 /// XM_002728804 /// XM_002729656 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398302_at AI013501 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013501 /DB_XREF=gi:3227557 /DB_XREF=EST208176 /CLONE=RSPBM34 /FEA=FLmRNA /CNT=26 /TID=Rn.1615.1 /TIER=Stack /STK=7 /UG=Rn.1615 /LL=64361 /UG_GENE=Prlfp /UG_TITLE=prolactin-like protein F /FL=gb:AF139808.1 gb:NM_022530.1 AI013501 prolactin family 7, subfamily a, member 3 Prl7a3 64361 NM_022530 0007565 // female pregnancy // non-traceable author statement 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation 1398303_s_at BI295970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295970 /DB_XREF=gi:14959948 /DB_XREF=UI-R-DK0-cfc-h-06-0-UI.s1 /CLONE=UI-R-DK0-cfc-h-06-0-UI /FEA=FLmRNA /CNT=32 /TID=Rn.24727.1 /TIER=Stack /STK=11 /UG=Rn.24727 /UG_TITLE=R.norvegicus mRNA for tropomyosin isoform 6 /FL=gb:L24775.1 BI295970 tropomyosin 3, gamma Tpm3 117557 NM_057208 /// NM_173111 0007420 // brain development // inferred from expression pattern 0002102 // podosome // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030426 // growth cone // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0031941 // filamentous actin // inferred from electronic annotation /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0043005 // neuron projection // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1398304_at L02530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L02530.1 /DB_XREF=gi:310114 /FEA=FLmRNA /CNT=10 /TID=Rn.9095.1 /TIER=FL+Stack /STK=6 /UG=Rn.9095 /LL=64512 /UG_GENE=Fzd10 /UG_TITLE=Drosophila polarity gene (frizzled) homologue /DEF=Rattus norvegicus Drosophila polarity gene (frizzled) homologue mRNA, complete cds. /FL=gb:L02530.1 L02530 frizzled homolog 2 (Drosophila) Fzd2 64512 NM_172035 0001775 // cell activation // inferred from expression pattern /// 0007165 // signal transduction // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007199 // G-protein signaling, coupled to cGMP nucleotide second messenger // inferred from direct assay /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from direct assay /// 0007223 // Wnt receptor signaling pathway, calcium modulating pathway // inferred from direct assay /// 0007267 // cell-cell signaling // inferred from electronic annotation /// 0007267 // cell-cell signaling // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016055 // Wnt receptor signaling pathway // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // inferred from electronic annotation /// 0030855 // epithelial cell differentiation // not recorded /// 0071305 // cellular response to vitamin D // inferred from expression pattern /// 0071363 // cellular response to growth factor stimulus // inferred from expression pattern /// 0071375 // cellular response to peptide hormone stimulus // inferred from expression pattern 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // traceable author statement /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0042813 // Wnt receptor activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // inferred from physical interaction 1398305_at U30831 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U30831.1 /DB_XREF=gi:1006784 /FEA=FLmRNA /CNT=7 /TID=Rn.31973.1 /TIER=FL /STK=4 /UG=Rn.31973 /DEF=Rattus norvegicus BK protein mRNA, complete cds. /PROD=BK protein /FL=gb:U30831.1 U30831 synaptotagmin XVII Syt17 192189 NM_138849 0006810 // transport // inferred from electronic annotation 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1398306_at J02811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J02811.1 /DB_XREF=gi:202882 /FEA=FLmRNA /CNT=3 /TID=Rn.9794.1 /TIER=FL /STK=3 /UG=Rn.9794 /UG_TITLE=Rattus norvegicus myoadenylate deaminase (AMP deaminase) mRNA, complete cds /DEF=Rattus norvegicus myoadenylate deaminase (AMP deaminase) mRNA, complete cds. /FL=gb:J02811.1 J02811 adenosine monophosphate deaminase 1 (isoform M) Ampd1 25028 NM_138876 0006144 // purine base metabolic process // inferred from electronic annotation /// 0009117 // nucleotide metabolic process // inferred from electronic annotation /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from direct assay 0003876 // AMP deaminase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016814 // hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines // inferred from electronic annotation /// 0019239 // deaminase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398307_at D38381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D38381.1 /DB_XREF=gi:2463545 /FEA=FLmRNA /CNT=2 /TID=Rn.32085.1 /TIER=FL /STK=2 /UG=Rn.32085 /DEF=Rattus norvegicus mRNA for P450 6beta-2, complete cds. /PROD=P450 6beta-2 /FL=gb:D38381.1 D38381 cytochrome P450, family 3, subfamily a, polypeptide 18 Cyp3a18 252931 NM_145782 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0008390 // testosterone 16-alpha-hydroxylase activity // inferred from direct assay /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016712 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050649 // testosterone 6-beta-hydroxylase activity // inferred from direct assay /// 0070330 // aromatase activity // inferred from electronic annotation 1398308_at BM383451 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383451 /DB_XREF=gi:18183504 /DB_XREF=UI-R-DM1-ckb-n-02-0-UI.s1 /CLONE=UI-R-DM1-ckb-n-02-0-UI /FEA=FLmRNA /CNT=18 /TID=Rn.8686.1 /TIER=Stack /STK=13 /UG=Rn.8686 /UG_TITLE=Rattus norvegicus mRNA for type II brain 4.1 minor isoform, complete cds /FL=gb:AB032828.1 BM383451 replication protein A3 Rpa3 296883 NM_001106584 0000718 // nucleotide-excision repair, DNA damage removal // not recorded /// 0006260 // DNA replication // inferred by curator /// 0006260 // DNA replication // not recorded /// 0006297 // nucleotide-excision repair, DNA gap filling // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005662 // DNA replication factor A complex // inferred from direct assay /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded 1398309_at D88364 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D88364.1 /DB_XREF=gi:2225905 /FEA=FLmRNA /CNT=5 /TID=Rn.10774.1 /TIER=FL /STK=1 /UG=Rn.10774 /DEF=Rattus norvegicus mRNA for PIG-L, complete cds. /PROD=PIG-L /FL=gb:D88364.1 D88364 phosphatidylinositol glycan anchor biosynthesis, class L Pigl 192263 NM_138901 0006506 // GPI anchor biosynthetic process // inferred from mutant phenotype /// 0006506 // GPI anchor biosynthetic process // inferred from electronic annotation /// 0016254 // preassembly of GPI anchor in ER membrane // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042406 // extrinsic to endoplasmic reticulum membrane // traceable author statement 0000225 // N-acetylglucosaminylphosphatidylinositol deacetylase activity // inferred from mutant phenotype /// 0000225 // N-acetylglucosaminylphosphatidylinositol deacetylase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1398310_at D17309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D17309.1 /DB_XREF=gi:450474 /FEA=FLmRNA /CNT=2 /TID=Rn.25716.1 /TIER=FL /STK=1 /UG=Rn.25716 /DEF=Rat mRNA for delta-4-3-ketosteroid 5-beta-reductase, complete cds. /PROD=delta-4-3-ketosteroid 5-beta-reductase /FL=gb:D17309.1 D17309 aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase) Akr1d1 192242 NM_138884 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006699 // bile acid biosynthetic process // inferred from electronic annotation /// 0006699 // bile acid biosynthetic process // not recorded /// 0006707 // cholesterol catabolic process // inferred from electronic annotation /// 0006707 // cholesterol catabolic process // not recorded /// 0007586 // digestion // inferred from electronic annotation /// 0007586 // digestion // not recorded /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008207 // C21-steroid hormone metabolic process // inferred from electronic annotation /// 0008207 // C21-steroid hormone metabolic process // not recorded /// 0008209 // androgen metabolic process // inferred from electronic annotation /// 0008209 // androgen metabolic process // not recorded /// 0030573 // bile acid catabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0055114 // oxidation reduction // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004033 // aldo-keto reductase activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0047568 // 3-oxo-5-beta-steroid 4-dehydrogenase activity // inferred from direct assay /// 0047787 // delta4-3-oxosteroid 5beta-reductase activity // inferred from electronic annotation 1398311_a_at AF313464 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF313464.1 /DB_XREF=gi:11321434 /GEN=ARMS /FEA=FLmRNA /CNT=1 /TID=Rn.16792.2 /TIER=FL /STK=1 /UG=Rn.16792 /LL=116478 /DEF=Rattus norvegicus ankyrin repeat-rich membrane-spanning protein (ARMS) mRNA, complete cds. /PROD=ankyrin repeat-rich membrane-spanning protein /FL=gb:AF313464.1 AF313464 kinase D-interacting substrate 220 Kidins220 116478 NM_053795 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0019887 // protein kinase regulator activity // inferred from direct assay /// 0019901 // protein kinase binding // inferred from direct assay 1398312_s_at AF042167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF042167.1 /DB_XREF=gi:4565899 /FEA=FLmRNA /CNT=1 /TID=Rn.82694.1 /TIER=FL /STK=1 /UG=Rn.82694 /LL=170838 /UG_GENE=UrT1-D /DEF=Rattus norvegicus urea transporter UT-A4 mRNA, complete cds. /PROD=urea transporter UT-A4 /FL=gb:AF042167.1 AF042167 solute carrier family 14 (urea transporter), member 2 Slc14a2 54302 NM_001110270 /// NM_019347 /// NM_177962 0006810 // transport // inferred from electronic annotation /// 0009414 // response to water deprivation // inferred from expression pattern /// 0015840 // urea transport // inferred from electronic annotation /// 0015840 // urea transport // not recorded /// 0015840 // urea transport // non-traceable author statement /// 0055085 // transmembrane transport // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0015204 // urea transmembrane transporter activity // inferred from electronic annotation /// 0015204 // urea transmembrane transporter activity // not recorded /// 0015204 // urea transmembrane transporter activity // non-traceable author statement 1398313_a_at AW435212 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435212 /DB_XREF=gi:6966519 /DB_XREF=UI-R-BJ0p-afj-g-10-0-UI.s1 /CLONE=UI-R-BJ0p-afj-g-10-0-UI /FEA=FLmRNA /CNT=20 /TID=Rn.80679.3 /TIER=Stack /STK=8 /UG=Rn.80679 /LL=29553 /UG_GENE=Kcnk3 /UG_TITLE=potassium channel, subfamily K, member 3 /FL=gb:AB048824.1 AW435212 potassium channel, subfamily K, member 3 Kcnk3 29553 NM_033376 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006813 // potassium ion transport // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0042493 // response to drug // inferred from mutant phenotype /// 0051481 // reduction of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0071294 // cellular response to zinc ion // inferred from expression pattern /// 0071456 // cellular response to hypoxia // inferred from mutant phenotype /// 0090102 // cochlea development // inferred from expression pattern 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005252 // open rectifier potassium channel activity // inferred from direct assay /// 0005267 // potassium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0042803 // protein homodimerization activity // inferred from mutant phenotype /// 0046982 // protein heterodimerization activity // inferred from mutant phenotype 1398314_at M37569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M37569.1 /DB_XREF=gi:204638 /FEA=FLmRNA /CNT=1 /TID=Affx.1.68 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rat homeobox protein R6 gene, complete cds. /FL=gb:M37569.1 M37569 homeo box D3 Hoxd3 288152 XM_001064213 /// XM_213633 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0007219 // Notch signaling pathway // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0010628 // positive regulation of gene expression // not recorded /// 0021615 // glossopharyngeal nerve morphogenesis // not recorded /// 0030878 // thyroid gland development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0051216 // cartilage development // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1398315_at AA800007 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800007 /DB_XREF=gi:2862962 /DB_XREF=EST189504 /CLONE=RHEAI23 /FEA=mRNA /CNT=77 /TID=Rn.27505.1 /TIER=Stack /STK=51 /UG=Rn.27505 /UG_TITLE=R.norvegicus (Sprague Dawley) ribosomal protein L15 mRNA AA800007 ribosomal protein L15 Rpl15 245981 NM_139114 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1398316_at X62277 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:X62277.1 /DB_XREF=gi:57063 /FEA=mRNA /CNT=19 /TID=Rn.11148.1 /TIER=Stack /STK=13 /UG=Rn.11148 /UG_TITLE=R.norvegicus mRNA from Leydig cell hypercalcemic tumour H-500 /DEF=R.norvegicus mRNA from Leydig cell hypercalcemic tumour H-500. X62277 similar to LEYDIG CELL TUMOR 10 KD PROTEIN LOC288913 288913 NM_198728 1398317_at BF283428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283428 /DB_XREF=gi:11214498 /DB_XREF=EST448019 /CLONE=RGIEB88 /FEA=mRNA /CNT=17 /TID=Rn.8453.1 /TIER=Stack /STK=7 /UG=Rn.8453 /LL=64473 /UG_GENE=Bpnt1 /UG_TITLE=3(2),5-bisphosphate nucleotidase BF283428 3'(2'), 5'-bisphosphate nucleotidase 1 Bpnt1 64473 NM_171990 0016311 // dephosphorylation // not recorded 0005829 // cytosol // not recorded 0000287 // magnesium ion binding // inferred from direct assay /// 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from direct assay /// 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0008441 // 3'(2'),5'-bisphosphate nucleotidase activity // inferred from direct assay /// 0008441 // 3'(2'),5'-bisphosphate nucleotidase activity // not recorded /// 0008441 // 3'(2'),5'-bisphosphate nucleotidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398318_at BI274326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274326 /DB_XREF=gi:14885150 /DB_XREF=UI-R-CW0-bwh-f-01-0-UI.s1 /CLONE=UI-R-CW0-bwh-f-01-0-UI /FEA=mRNA /CNT=10 /TID=Rn.10779.1 /TIER=ConsEnd /STK=4 /UG=Rn.10779 /LL=24571 /UG_GENE=Muc1 /UG_TITLE=Mucin1 BI274326 mucin 1, cell surface associated Muc1 24571 NM_012602 0001666 // response to hypoxia // inferred from expression pattern /// 0007565 // female pregnancy // inferred from expression pattern /// 0030855 // epithelial cell differentiation // inferred from expression pattern /// 0071300 // cellular response to retinoic acid // inferred from expression pattern 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author statement /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016324 // apical plasma membrane // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded 1398319_at AI071000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071000 /DB_XREF=gi:3397251 /DB_XREF=UI-R-C2-na-g-10-0-UI.s1 /CLONE=UI-R-C2-na-g-10-0-UI /FEA=mRNA /CNT=7 /TID=Rn.32307.1 /TIER=ConsEnd /STK=1 /UG=Rn.32307 /UG_TITLE=Rattus norvegicus Nclone10 mRNA AI071000 1398320_at BM986214 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM986214 /DB_XREF=gi:19705603 /DB_XREF=EST531668 /CLONE=RGIAA05 /FEA=mRNA /CNT=4 /TID=Rn.44844.1 /TIER=ConsEnd /STK=0 /UG=Rn.44844 /UG_TITLE=R.norvegicus mRNA for 6-phosphofructo-2-kinase6-phosphofructo-2-kinase exons 1a,1b,1c,1d BM986214 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 Pfkfb2 24640 NM_001033964 /// NM_001033965 /// NM_080477 0006000 // fructose metabolic process // inferred from electronic annotation /// 0006003 // fructose 2,6-bisphosphate metabolic process // traceable author statement /// 0006003 // fructose 2,6-bisphosphate metabolic process // inferred from electronic annotation /// 0006007 // glucose catabolic process // inferred from direct assay /// 0006089 // lactate metabolic process // inferred from direct assay /// 0006090 // pyruvate metabolic process // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0009749 // response to glucose stimulus // inferred from direct assay /// 0032024 // positive regulation of insulin secretion // inferred from direct assay /// 0033133 // positive regulation of glucokinase activity // inferred from direct assay 0005737 // cytoplasm // inferred from direct assay /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003873 // 6-phosphofructo-2-kinase activity // traceable author statement /// 0003873 // 6-phosphofructo-2-kinase activity // inferred from electronic annotation /// 0004331 // fructose-2,6-bisphosphate 2-phosphatase activity // traceable author statement /// 0004331 // fructose-2,6-bisphosphate 2-phosphatase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019900 // kinase binding // inferred from physical interaction 1398321_a_at U57361 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U57361.1 /DB_XREF=gi:1518600 /GEN=Col12a1 /FEA=mRNA /CNT=1 /TID=Rn.11218.2 /TIER=ConsEnd /STK=0 /UG=Rn.11218 /LL=25683 /DEF=Rattus norvegicus collagen XII alpha 1 (Col12a1) mRNA, partial cds. /PROD=collagen XII alpha 1 U57361 collagen, type XII, alpha 1 Col12a1 25683 XM_001060689 /// XM_243912 0007155 // cell adhesion // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005595 // collagen type XII // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005201 // extracellular matrix structural constituent // traceable author statement 1398322_at M17960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:M17960.1 /DB_XREF=gi:204768 /FEA=mRNA /CNT=1 /TID=Rn.964.4 /TIER=ConsEnd /STK=0 /UG=Rn.964 /LL=24483 /UG_GENE=Igf2 /UG_TITLE=Insulin-like growth factor II (somatomedin A) /DEF=Rat insulin-like growth factor II (IGFII) mRNA, 5 flanking region. M17960 insulin-like growth factor 2 Igf2 24483 NM_001190162 /// NM_001190163 /// NM_031511 0001503 // ossification // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0008283 // cell proliferation // traceable author statement /// 0009314 // response to radiation // inferred from expression pattern /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0031017 // exocrine pancreas development // inferred from electronic annotation /// 0031017 // exocrine pancreas development // not recorded /// 0031667 // response to nutrient levels // inferred from expression pattern /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0035094 // response to nicotine // inferred from expression pattern /// 0042493 // response to drug // inferred from direct assay /// 0043410 // positive regulation of MAPKKK cascade // inferred from electronic annotation /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0045840 // positive regulation of mitosis // inferred from electronic annotation /// 0045840 // positive regulation of mitosis // not recorded /// 0046628 // positive regulation of insulin receptor signaling pathway // inferred from electronic annotation /// 0046628 // positive regulation of insulin receptor signaling pathway // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling cascade // inferred from electronic annotation /// 0051897 // positive regulation of protein kinase B signaling cascade // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation 0005158 // insulin receptor binding // inferred from electronic annotation /// 0005158 // insulin receptor binding // not recorded /// 0005159 // insulin-like growth factor receptor binding // inferred from electronic annotation /// 0005159 // insulin-like growth factor receptor binding // not recorded /// 0005179 // hormone activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // not recorded /// 0008083 // growth factor activity // traceable author statement /// 0008083 // growth factor activity // inferred from electronic annotation 1398323_at L81136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:L81136 /DB_XREF=gi:2231144 /FEA=DNA /CNT=1 /TID=Rn.2115.3 /TIER=ConsEnd /STK=0 /UG=Rn.2115 /LL=83789 /UG_GENE=Rps2 /UG_TITLE=ribosomal protein S2 /DEF=Rattus norvegicus (strain R21) Rps2r1 preliminary DNA, complete cds L81136 1398324_at BI279866 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279866 /DB_XREF=gi:14928092 /DB_XREF=UI-R-CU0s-cbr-h-03-0-UI.s1 /CLONE=UI-R-CU0s-cbr-h-03-0-UI /FEA=EST /CNT=83 /TID=Rn.5974.1 /TIER=Stack /STK=53 /UG=Rn.5974 /UG_TITLE=ESTs, Highly similar to R5RT18 ribosomal protein L18a, cytosolic (validated) - rat (R.norvegicus) BI279866 ribosomal protein L18A Rpl18a 290641 NM_212510 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398325_at AI172464 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172464 /DB_XREF=gi:3712504 /DB_XREF=EST218475 /CLONE=RMUCA19 /FEA=EST /CNT=50 /TID=Rn.998.1 /TIER=Stack /STK=40 /UG=Rn.998 /UG_TITLE=ESTs, Weakly similar to CD63 RAT CD63 ANTIGEN (R.norvegicus) AI172464 tetraspanin 3 Tspan3 300733 NM_001005547 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1398326_at BI282332 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282332 /DB_XREF=gi:14932995 /DB_XREF=UI-R-CU0s-cbz-d-04-0-UI.s1 /CLONE=UI-R-CU0s-cbz-d-04-0-UI /FEA=EST /CNT=31 /TID=Rn.2281.1 /TIER=Stack /STK=28 /UG=Rn.2281 /UG_TITLE=ESTs, Weakly similar to C16C10.11.p (Caenorhabditis elegans) (C.elegans) BI282332 coiled-coil-helix-coiled-coil-helix domain containing 10 Chchd10 361824 NM_001007008 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1398327_at BM386598 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386598 /DB_XREF=gi:18186651 /DB_XREF=UI-R-CN1-cjg-o-08-0-UI.s1 /CLONE=UI-R-CN1-cjg-o-08-0-UI /FEA=EST /CNT=42 /TID=Rn.7658.1 /TIER=Stack /STK=25 /UG=Rn.7658 /UG_TITLE=ESTs, Weakly similar to TALIN (M.musculus) BM386598 fermitin family homolog 2 (Drosophila) Fermt2 289992 NM_001011915 0001725 // stress fiber // inferred from electronic annotation /// 0001725 // stress fiber // not recorded /// 0005829 // cytosol // not recorded /// 0031941 // filamentous actin // inferred from electronic annotation /// 0031941 // filamentous actin // not recorded 0005488 // binding // inferred from electronic annotation 1398328_at BM389797 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389797 /DB_XREF=gi:18189850 /DB_XREF=UI-R-CN1-cjp-f-13-0-UI.s1 /CLONE=UI-R-CN1-cjp-f-13-0-UI /FEA=EST /CNT=29 /TID=Rn.3719.1 /TIER=Stack /STK=23 /UG=Rn.3719 /UG_TITLE=ESTs BM389797 forkhead box K2 Foxk2 303753 NM_001107075 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0000287 // magnesium ion binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded 1398329_at BI298821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298821 /DB_XREF=gi:14975101 /DB_XREF=UI-R-CV2-chv-a-09-0-UI.s1 /CLONE=UI-R-CV2-chv-a-09-0-UI /FEA=EST /CNT=22 /TID=Rn.66291.1 /TIER=Stack /STK=22 /UG=Rn.66291 /UG_TITLE=ESTs BI298821 1398330_at BM388715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388715 /DB_XREF=gi:18188768 /DB_XREF=UI-R-DZ0-ckm-j-12-0-UI.s1 /CLONE=UI-R-DZ0-ckm-j-12-0-UI /FEA=EST /CNT=26 /TID=Rn.37725.2 /TIER=Stack /STK=20 /UG=Rn.37725 /LL=170922 /UG_GENE=Ilk /UG_TITLE=integrin-linked kinase BM388715 syntaxin binding protein 1 Stxbp1 25558 NM_013038 0002576 // platelet degranulation // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006887 // exocytosis // not recorded /// 0006904 // vesicle docking involved in exocytosis // inferred from electronic annotation /// 0006904 // vesicle docking involved in exocytosis // not recorded /// 0007269 // neurotransmitter secretion // not recorded /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0007412 // axon target recognition // not recorded /// 0010807 // regulation of synaptic vesicle priming // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016188 // synaptic vesicle maturation // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0032229 // negative regulation of synaptic transmission, GABAergic // not recorded /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0050821 // protein stabilization // inferred from direct assay /// 0060292 // long term synaptic depression // not recorded /// 0070527 // platelet aggregation // not recorded 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031091 // platelet alpha granule // not recorded /// 0043234 // protein complex // inferred from direct assay 0000149 // SNARE binding // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0017075 // syntaxin-1 binding // inferred from direct assay /// 0017075 // syntaxin-1 binding // not recorded /// 0019904 // protein domain specific binding // inferred from direct assay /// 0019905 // syntaxin binding // inferred from direct assay /// 0030347 // syntaxin-2 binding // not recorded /// 0042802 // identical protein binding // inferred from physical interaction /// 0047485 // protein N-terminus binding // inferred from direct assay 1398331_at BF414554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414554 /DB_XREF=gi:11402543 /DB_XREF=UI-R-CA0-bpb-a-08-0-UI.s1 /CLONE=UI-R-CA0-bpb-a-08-0-UI /FEA=EST /CNT=20 /TID=Rn.63610.1 /TIER=Stack /STK=20 /UG=Rn.63610 /UG_TITLE=ESTs BF414554 1398332_at BM386294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386294 /DB_XREF=gi:18186347 /DB_XREF=UI-R-CN1-cjf-f-01-0-UI.s1 /CLONE=UI-R-CN1-cjf-f-01-0-UI /FEA=EST /CNT=21 /TID=Rn.9494.1 /TIER=Stack /STK=18 /UG=Rn.9494 /UG_TITLE=ESTs BM386294 protein phosphatase 1F (PP2C domain containing) Ppm1f 287931 NM_175755 0006470 // protein dephosphorylation // traceable author statement /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // traceable author statement /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398333_at AI598434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598434 /DB_XREF=gi:4607482 /DB_XREF=EST250137 /CLONE=REMDP76 /FEA=EST /CNT=23 /TID=Rn.11509.1 /TIER=Stack /STK=17 /UG=Rn.11509 /UG_TITLE=ESTs AI598434 1398334_a_at BF417278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF417278 /DB_XREF=gi:11405267 /DB_XREF=UI-R-CN0-bky-b-08-0-UI.s1 /CLONE=UI-R-CN0-bky-b-08-0-UI /FEA=EST /CNT=19 /TID=Rn.35730.1 /TIER=Stack /STK=17 /UG=Rn.35730 /UG_TITLE=ESTs BF417278 COMM domain containing 9 Commd9 295956 NM_001033692 1398335_at BI285665 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285665 /DB_XREF=gi:14939539 /DB_XREF=UI-R-CT0s-cas-a-10-0-UI.s1 /CLONE=UI-R-CT0s-cas-a-10-0-UI /FEA=EST /CNT=22 /TID=Rn.22291.1 /TIER=Stack /STK=16 /UG=Rn.22291 /UG_TITLE=ESTs BI285665 tweety homolog 3 (Drosophila) Ttyh3 304315 NM_001107124 0005886 // plasma membrane // not recorded 0005254 // chloride channel activity // not recorded 1398336_at AI012577 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI012577 /DB_XREF=gi:3226409 /DB_XREF=EST207028 /CLONE=RPLAZ16 /FEA=EST /CNT=18 /TID=Rn.964.5 /TIER=Stack /STK=16 /UG=Rn.964 /LL=24483 /UG_GENE=Igf2 /UG_TITLE=Insulin-like growth factor II (somatomedin A) AI012577 ring finger protein 25 Rnf25 301515 NM_001012004 0016567 // protein ubiquitination // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded 0005634 // nucleus // not recorded /// 0005829 // cytosol // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051059 // NF-kappaB binding // not recorded 1398337_at AI169116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169116 /DB_XREF=gi:3705424 /DB_XREF=EST214947 /CLONE=RKIBN32 /FEA=EST /CNT=23 /TID=Rn.3259.1 /TIER=Stack /STK=15 /UG=Rn.3259 /UG_TITLE=ESTs AI169116 Similar to RIKEN cDNA 9430077D24 gene LOC290341 290341 XR_008528 1398338_at AI716099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716099 /DB_XREF=gi:5033400 /DB_XREF=UI-R-Y0-abd-f-05-0-UI.s1 /CLONE=UI-R-Y0-abd-f-05-0-UI /FEA=EST /CNT=17 /TID=Rn.20372.1 /TIER=Stack /STK=15 /UG=Rn.20372 /UG_TITLE=ESTs AI716099 1398339_at BE109605 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109605 /DB_XREF=gi:8501710 /DB_XREF=UI-R-BJ1-avq-a-11-0-UI.s1 /CLONE=UI-R-BJ1-avq-a-11-0-UI /FEA=EST /CNT=19 /TID=Rn.1074.1 /TIER=Stack /STK=14 /UG=Rn.1074 /UG_TITLE=ESTs BE109605 splicing factor 1 Sf1 117855 NM_001110793 /// NM_058210 0006917 // induction of apoptosis // non-traceable author statement /// 0022402 // cell cycle process // inferred from electronic annotation /// 0030238 // male sex determination // inferred from electronic annotation /// 0033327 // Leydig cell differentiation // inferred from electronic annotation /// 0048662 // negative regulation of smooth muscle cell proliferation // inferred from mutant phenotype /// 0050810 // regulation of steroid biosynthetic process // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1398340_at AI317832 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI317832 /DB_XREF=gi:4033099 /DB_XREF=EST234503 /CLONE=RPPAA40 /FEA=EST /CNT=16 /TID=Rn.4157.1 /TIER=Stack /STK=14 /UG=Rn.4157 /UG_TITLE=ESTs, Moderately similar to maternal transcript Maid (M.musculus) AI317832 cyclin D-type binding-protein 1 Ccndbp1 362201 NM_001013204 0007049 // cell cycle // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398341_at BI295767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295767 /DB_XREF=gi:14959544 /DB_XREF=UI-R-DK0-cfa-d-06-0-UI.s1 /CLONE=UI-R-DK0-cfa-d-06-0-UI /FEA=EST /CNT=16 /TID=Rn.224.1 /TIER=Stack /STK=14 /UG=Rn.224 /UG_TITLE=ESTs, Moderately similar to S65785 mel-13a protein - mouse (M.musculus) BI295767 CDGSH iron sulfur domain 3 Cisd3 287661 NM_001105835 0005739 // mitochondrion // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation 1398342_at BF549775 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549775 /DB_XREF=gi:11659505 /DB_XREF=UI-R-A0-az-d-01-0-UI.r1 /CLONE=UI-R-A0-az-d-01-0-UI /FEA=EST /CNT=21 /TID=Rn.2453.1 /TIER=Stack /STK=13 /UG=Rn.2453 /UG_TITLE=ESTs BF549775 tumor suppressor candidate 2 Tusc2 501052 NM_001109297 0005515 // protein binding // not recorded 1398343_at AI104324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104324 /DB_XREF=gi:3704960 /DB_XREF=EST213613 /CLONE=RHECA37 /FEA=EST /CNT=32 /TID=Rn.27927.1 /TIER=Stack /STK=13 /UG=Rn.27927 /UG_TITLE=ESTs AI104324 DnaJ (Hsp40) homolog, subfamily A, member 4 Dnaja4 300721 NM_001025411 0006457 // protein folding // inferred from electronic annotation /// 0009408 // response to heat // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0005524 // ATP binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1398344_at BI287962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287962 /DB_XREF=gi:14944079 /DB_XREF=UI-R-CX0s-ccw-d-02-0-UI.s1 /CLONE=UI-R-CX0s-ccw-d-02-0-UI /FEA=EST /CNT=16 /TID=Rn.17278.1 /TIER=Stack /STK=13 /UG=Rn.17278 /UG_TITLE=ESTs BI287962 mediator complex subunit 17 Med17 300367 NM_001106801 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0030518 // steroid hormone receptor signaling pathway // not recorded /// 0030521 // androgen receptor signaling pathway // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded /// 0016592 // mediator complex // inferred from electronic annotation /// 0016592 // mediator complex // not recorded 0003712 // transcription cofactor activity // not recorded /// 0003713 // transcription coactivator activity // not recorded /// 0004872 // receptor activity // not recorded /// 0005515 // protein binding // not recorded /// 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation /// 0016455 // RNA polymerase II transcription mediator activity // not recorded /// 0016563 // transcription activator activity // not recorded /// 0030528 // transcription regulator activity // not recorded /// 0046966 // thyroid hormone receptor binding // not recorded 1398345_at BM389225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389225 /DB_XREF=gi:18189278 /DB_XREF=UI-R-DZ0-cko-i-12-0-UI.s1 /CLONE=UI-R-DZ0-cko-i-12-0-UI /FEA=EST /CNT=16 /TID=Rn.1664.1 /TIER=Stack /STK=13 /UG=Rn.1664 /UG_TITLE=ESTs BM389225 1398346_at BI275581 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275581 /DB_XREF=gi:14919632 /DB_XREF=UI-R-CW0-bwk-a-10-0-UI.s1 /CLONE=UI-R-CW0-bwk-a-10-0-UI /FEA=EST /CNT=15 /TID=Rn.4049.1 /TIER=Stack /STK=13 /UG=Rn.4049 /UG_TITLE=ESTs BI275581 1398347_at AI406520 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406520 /DB_XREF=gi:4250024 /DB_XREF=EST234806 /CLONE=RBRDL16 /FEA=EST /CNT=24 /TID=Rn.16368.1 /TIER=Stack /STK=12 /UG=Rn.16368 /UG_TITLE=ESTs, Moderately similar to S23251 protein-tyrosine kinase (M.musculus) AI406520 Axl receptor tyrosine kinase Axl 308444 NM_001013147 /// NM_031794 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from mutant phenotype /// 0006916 // anti-apoptosis // not recorded /// 0007169 // transmembrane receptor protein tyrosine kinase signaling pathway // inferred from electronic annotation /// 0008283 // cell proliferation // non-traceable author statement /// 0016477 // cell migration // non-traceable author statement /// 0030154 // cell differentiation // inferred from mutant phenotype /// 0030154 // cell differentiation // not recorded /// 0031100 // organ regeneration // inferred from expression pattern /// 0031668 // cellular response to extracellular stimulus // inferred from electronic annotation /// 0031668 // cellular response to extracellular stimulus // not recorded /// 0042246 // tissue regeneration // traceable author statement /// 0048771 // tissue remodeling // traceable author statement /// 0070301 // cellular response to hydrogen peroxide // inferred from direct assay /// 0070301 // cellular response to hydrogen peroxide // not recorded 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0004714 // transmembrane receptor protein tyrosine kinase activity // traceable author statement /// 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0019838 // growth factor binding // traceable author statement /// 0032036 // myosin heavy chain binding // inferred from physical interaction /// 0032036 // myosin heavy chain binding // not recorded /// 0043548 // phosphoinositide 3-kinase binding // inferred from physical interaction /// 0043548 // phosphoinositide 3-kinase binding // not recorded 1398348_at AA945604 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945604 /DB_XREF=gi:3105520 /DB_XREF=EST201103 /CLONE=RLIAP65 /FEA=EST /CNT=14 /TID=Rn.7398.1 /TIER=Stack /STK=12 /UG=Rn.7398 /UG_TITLE=ESTs AA945604 1398349_at AI411497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411497 /DB_XREF=gi:4255001 /DB_XREF=EST239791 /CLONE=RKIEL36 /FEA=EST /CNT=13 /TID=Rn.23375.1 /TIER=Stack /STK=12 /UG=Rn.23375 /UG_TITLE=ESTs AI411497 adenylate kinase 2 Ak2 24184 NM_001033967 /// NM_030986 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0046083 // adenine metabolic process // traceable author statement 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005758 // mitochondrial intermembrane space // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004017 // adenylate kinase activity // traceable author statement /// 0004017 // adenylate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016776 // phosphotransferase activity, phosphate group as acceptor // inferred from electronic annotation /// 0019201 // nucleotide kinase activity // inferred from electronic annotation /// 0019205 // nucleobase, nucleoside, nucleotide kinase activity // inferred from electronic annotation 1398350_at BG380454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380454 /DB_XREF=gi:13304926 /DB_XREF=UI-R-CT0-btx-d-12-0-UI.s1 /CLONE=UI-R-CT0-btx-d-12-0-UI /FEA=EST /CNT=49 /TID=Rn.14.1 /TIER=Stack /STK=11 /UG=Rn.14 /UG_TITLE=ESTs BG380454 hypothetical protein LOC100364588 LOC100364588 100364588 XM_002725926 1398351_at AI175593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175593 /DB_XREF=gi:3726231 /DB_XREF=EST219149 /CLONE=ROVBC38 /FEA=EST /CNT=17 /TID=Rn.22054.1 /TIER=Stack /STK=11 /UG=Rn.22054 /UG_TITLE=ESTs AI175593 Ubiquitin specific peptidase 7 (herpes virus-associated) Usp7 360471 NM_001024790 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006917 // induction of apoptosis // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0016579 // protein deubiquitination // inferred from direct assay /// 0016579 // protein deubiquitination // not recorded /// 0016579 // protein deubiquitination // inferred from sequence or structural similarity /// 0031647 // regulation of protein stability // inferred from direct assay /// 0051090 // regulation of transcription factor activity // not recorded /// 0051090 // regulation of transcription factor activity // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0002039 // p53 binding // not recorded /// 0004221 // ubiquitin thiolesterase activity // not recorded /// 0004221 // ubiquitin thiolesterase activity // inferred from sequence or structural similarity /// 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific protease activity // inferred from direct assay /// 0004843 // ubiquitin-specific protease activity // not recorded /// 0004843 // ubiquitin-specific protease activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0042803 // protein homodimerization activity // inferred from direct assay 1398352_at AI412927 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412927 /DB_XREF=gi:4256431 /DB_XREF=EST241227 /CLONE=RKIEG65 /FEA=EST /CNT=16 /TID=Rn.13185.1 /TIER=Stack /STK=11 /UG=Rn.13185 /UG_TITLE=ESTs, Weakly similar to JC5517 GuRNA helicase II binding protein (H.sapiens) AI412927 protein inhibitor of activated STAT, 4 Pias4 362827 NM_001100757 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016925 // protein sumoylation // not recorded /// 0016925 // protein sumoylation // inferred from electronic annotation /// 0033235 // positive regulation of protein sumoylation // not recorded /// 0033235 // positive regulation of protein sumoylation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0016363 // nuclear matrix // not recorded /// 0016363 // nuclear matrix // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0019789 // SUMO ligase activity // not recorded /// 0019789 // SUMO ligase activity // inferred from electronic annotation 1398353_at AI236260 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236260 /DB_XREF=gi:3829766 /DB_XREF=EST232822 /CLONE=ROVDD39 /FEA=EST /CNT=14 /TID=Rn.15760.2 /TIER=Stack /STK=11 /UG=Rn.15760 /UG_TITLE=ESTs, Weakly similar to ARF6_HUMAN ADP-RIBOSYLATION FACTOR 6 (R.norvegicus) AI236260 SAR1 homolog A (S. cerevisiae) Sar1a 361842 NM_001007739 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1398354_at AI555457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555457 /DB_XREF=gi:4487820 /DB_XREF=UI-R-C2p-qq-c-09-0-UI.s1 /CLONE=UI-R-C2p-qq-c-09-0-UI /FEA=EST /CNT=14 /TID=Rn.7983.1 /TIER=Stack /STK=11 /UG=Rn.7983 /UG_TITLE=ESTs AI555457 catenin (cadherin associated protein), alpha-like 1 Ctnnal1 298019 NM_001106649 0007155 // cell adhesion // inferred from electronic annotation /// 0007266 // Rho protein signal transduction // not recorded 0005829 // cytosol // not recorded /// 0015629 // actin cytoskeleton // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0045296 // cadherin binding // inferred from electronic annotation 1398355_at AI232142 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232142 /DB_XREF=gi:4135718 /DB_XREF=EST228830 /CLONE=RKIBX40 /FEA=EST /CNT=12 /TID=Rn.20364.2 /TIER=Stack /STK=11 /UG=Rn.20364 /LL=114497 /UG_GENE=Chak /UG_TITLE=transient receptor potential-related protein, ChaK AI232142 Transient receptor potential cation channel, subfamily M, member 7 Trpm7 679906 XM_001056331 /// XM_002726172 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0016340 // calcium-dependent cell-matrix adhesion // not recorded /// 0031032 // actomyosin structure organization // not recorded /// 0046777 // protein autophosphorylation // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070588 // calcium ion transmembrane transport // not recorded 0001726 // ruffle // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0004672 // protein kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // inferred from direct assay /// 0005262 // calcium channel activity // inferred from direct assay /// 0005262 // calcium channel activity // not recorded /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0017022 // myosin binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1398356_at BF420718 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420718 /DB_XREF=gi:11408707 /DB_XREF=UI-R-BJ2-bpz-c-07-0-UI.s1 /CLONE=UI-R-BJ2-bpz-c-07-0-UI /FEA=EST /CNT=31 /TID=Rn.3882.1 /TIER=Stack /STK=10 /UG=Rn.3882 /UG_TITLE=ESTs, Moderately similar to F43G9.5.p (Caenorhabditis elegans) (C.elegans) BF420718 nudix (nucleoside diphosphate linked moiety X)-type motif 21 Nudt21 291877 NM_001039004 0006397 // mRNA processing // not recorded /// 0006397 // mRNA processing // inferred from sequence or structural similarity /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0042382 // paraspeckles // not recorded /// 0042382 // paraspeckles // inferred from sequence or structural similarity /// 0042382 // paraspeckles // inferred from electronic annotation 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017091 // AU-rich element binding // not recorded /// 0017091 // AU-rich element binding // inferred from sequence or structural similarity /// 0042803 // protein homodimerization activity // not recorded /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded 1398357_at BI281575 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281575 /DB_XREF=gi:14931447 /DB_XREF=UI-R-CT0s-cau-a-02-0-UI.s1 /CLONE=UI-R-CT0s-cau-a-02-0-UI /FEA=EST /CNT=15 /TID=Rn.7656.1 /TIER=Stack /STK=10 /UG=Rn.7656 /UG_TITLE=ESTs, Weakly similar to I60307 beta-galactosidase, alpha peptide - Escherichia coli (E.coli) BI281575 complexin 1 Cplx1 64832 NM_022864 0006810 // transport // inferred from electronic annotation /// 0006836 // neurotransmitter transport // inferred from electronic annotation /// 0006887 // exocytosis // inferred from electronic annotation /// 0016079 // synaptic vesicle exocytosis // inferred from direct assay /// 0016079 // synaptic vesicle exocytosis // not recorded /// 0016079 // synaptic vesicle exocytosis // inferred from electronic annotation /// 0030073 // insulin secretion // inferred from electronic annotation /// 0030073 // insulin secretion // not recorded /// 0055085 // transmembrane transport // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0031201 // SNARE complex // not recorded /// 0031201 // SNARE complex // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay /// 0045202 // synapse // inferred from direct assay /// 0070032 // synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex // inferred from direct assay 0000149 // SNARE binding // inferred from direct assay /// 0005326 // neurotransmitter transporter activity // inferred from electronic annotation /// 0005326 // neurotransmitter transporter activity // not recorded /// 0017075 // syntaxin-1 binding // inferred from direct assay /// 0019905 // syntaxin binding // inferred from electronic annotation 1398358_a_at AW520594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520594 /DB_XREF=gi:7162972 /DB_XREF=UI-R-BJ0p-agc-c-05-0-UI.s1 /CLONE=UI-R-BJ0p-agc-c-05-0-UI /FEA=EST /CNT=16 /TID=Rn.16988.2 /TIER=Stack /STK=10 /UG=Rn.16988 /UG_TITLE=Rattus norvegicus V1-type AVP membrane receptor mRNA, complete cds AW520594 integrin, beta 5 Itgb5 257645 NM_147139 0006936 // muscle contraction // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0005925 // focal adhesion // not recorded /// 0008305 // integrin complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031252 // cell leading edge // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1398359_at AI008549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008549 /DB_XREF=gi:3222381 /DB_XREF=EST203000 /CLONE=REMAY86 /FEA=EST /CNT=14 /TID=Rn.13828.1 /TIER=Stack /STK=10 /UG=Rn.13828 /UG_TITLE=ESTs, Weakly similar to neurodegeneration-associated protein 1 (R.norvegicus) AI008549 ring finger protein 181 Rnf181 297337 NM_001007647 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398360_at AI009805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009805 /DB_XREF=gi:4133116 /DB_XREF=EST204256 /CLONE=RLUBO68 /FEA=EST /CNT=12 /TID=Rn.29724.1 /TIER=Stack /STK=10 /UG=Rn.29724 /UG_TITLE=ESTs, Moderately similar to transmembrane 9 superfamily member 1 (Mus musculus) (M.musculus) AI009805 elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1 Elovl1 679532 NM_001044275 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398361_at BI295127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295127 /DB_XREF=gi:14958262 /DB_XREF=UI-R-DK0-ceg-b-02-0-UI.s1 /CLONE=UI-R-DK0-ceg-b-02-0-UI /FEA=EST /CNT=11 /TID=Rn.40465.1 /TIER=Stack /STK=10 /UG=Rn.40465 /UG_TITLE=ESTs BI295127 Rho GTPase activating protein 10 Arhgap10 688429 NM_001109501 0007010 // cytoskeleton organization // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0046847 // filopodium assembly // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005100 // Rho GTPase activator activity // not recorded /// 0008093 // cytoskeletal adaptor activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation 1398362_at AI011448 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI011448 /DB_XREF=gi:4133423 /DB_XREF=EST205899 /CLONE=ROVAV10 /FEA=EST /CNT=11 /TID=Rn.13245.1 /TIER=Stack /STK=10 /UG=Rn.13245 /UG_TITLE=ESTs, Highly similar to A49128 cell-fate determining gene Notch2 protein - rat (R.norvegicus) AI011448 Notch homolog 2 (Drosophila) Notch2 29492 NM_024358 0001709 // cell fate determination // inferred from direct assay /// 0002011 // morphogenesis of an epithelial sheet // inferred from electronic annotation /// 0002011 // morphogenesis of an epithelial sheet // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0007050 // cell cycle arrest // inferred from sequence or structural similarity /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // inferred from electronic annotation /// 0007368 // determination of left/right symmetry // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from sequence or structural similarity /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0016049 // cell growth // not recorded /// 0016049 // cell growth // inferred from sequence or structural similarity /// 0016049 // cell growth // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0042060 // wound healing // not recorded /// 0042060 // wound healing // inferred from electronic annotation /// 0042246 // tissue regeneration // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0046579 // positive regulation of Ras protein signal transduction // not recorded /// 0046579 // positive regulation of Ras protein signal transduction // inferred from sequence or structural similarity /// 0046579 // positive regulation of Ras protein signal transduction // inferred from electronic annotation /// 0050793 // regulation of developmental process // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0009986 // cell surface // traceable author statement /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // traceable author statement /// 0004872 // receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1398363_at AI178206 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178206 /DB_XREF=gi:3728844 /DB_XREF=EST221871 /CLONE=RPLCN50 /FEA=EST /CNT=10 /TID=Rn.24174.1 /TIER=Stack /STK=10 /UG=Rn.24174 /UG_TITLE=ESTs AI178206 WD repeat domain 54 Wdr54 500226 NM_001109245 1398364_at BF555972 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF555972 /DB_XREF=gi:11665702 /DB_XREF=UI-R-A1-dy-a-05-0-UI.r1 /CLONE=UI-R-A1-dy-a-05-0-UI /FEA=EST /CNT=18 /TID=Rn.3870.1 /TIER=Stack /STK=9 /UG=Rn.3870 /UG_TITLE=ESTs BF555972 similar to chromosome 1 open reading frame 63 RGD1359529 362626 NM_001014193 1398365_at AI171466 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171466 /DB_XREF=gi:3711506 /DB_XREF=EST217428 /CLONE=RMUBL31 /FEA=EST /CNT=17 /TID=Rn.29476.1 /TIER=Stack /STK=9 /UG=Rn.29476 /UG_TITLE=ESTs, Weakly similar to C32E8.3.p (Caenorhabditis elegans) (C.elegans) AI171466 tubulin polymerization-promoting protein family member 3 Tppp3 291966 NM_001009639 0001578 // microtubule bundle formation // not recorded /// 0001578 // microtubule bundle formation // inferred from sequence or structural similarity /// 0001578 // microtubule bundle formation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0015631 // tubulin binding // not recorded /// 0015631 // tubulin binding // inferred from sequence or structural similarity /// 0015631 // tubulin binding // inferred from electronic annotation 1398366_at BF282644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282644 /DB_XREF=gi:11213714 /DB_XREF=EST447235 /CLONE=RGIDR21 /FEA=EST /CNT=14 /TID=Rn.22454.1 /TIER=Stack /STK=9 /UG=Rn.22454 /UG_TITLE=ESTs BF282644 1398367_at BF283504 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283504 /DB_XREF=gi:11214574 /DB_XREF=EST448095 /CLONE=RGIED25 /FEA=EST /CNT=17 /TID=Rn.54858.1 /TIER=Stack /STK=9 /UG=Rn.54858 /UG_TITLE=ESTs, Highly similar to SPOP_HUMAN SPECKLE-TYPE POZ PROTEIN (H.sapiens) BF283504 speckle-type POZ protein Spop 287643 NM_001100496 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1398368_at AI406502 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI406502 /DB_XREF=gi:4250006 /DB_XREF=EST234788 /CLONE=RBRDL63 /FEA=EST /CNT=10 /TID=Rn.16640.1 /TIER=Stack /STK=9 /UG=Rn.16640 /UG_TITLE=ESTs AI406502 1398369_at AI599048 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599048 /DB_XREF=gi:4608096 /DB_XREF=EST250751 /CLONE=REMEA74 /FEA=EST /CNT=9 /TID=Rn.2027.1 /TIER=Stack /STK=9 /UG=Rn.2027 /UG_TITLE=ESTs AI599048 A kinase (PRKA) anchor protein 13 Akap13 293024 NM_001106271 0006915 // apoptosis // not recorded /// 0008104 // protein localization // traceable author statement /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0010611 // regulation of cardiac muscle hypertrophy // inferred from mutant phenotype /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0035023 // regulation of Rho protein signal transduction // inferred from electronic annotation /// 0045859 // regulation of protein kinase activity // inferred from mutant phenotype /// 0051168 // nuclear export // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0005085 // guanyl-nucleotide exchange factor activity // not recorded /// 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from physical interaction /// 0032947 // protein complex scaffold // inferred from mutant phenotype /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051018 // protein kinase A binding // inferred from mutant phenotype 1398370_at AW522471 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522471 /DB_XREF=gi:7164856 /DB_XREF=UI-R-BO0-agv-e-11-0-UI.s1 /CLONE=UI-R-BO0-agv-e-11-0-UI /FEA=EST /CNT=9 /TID=Rn.19596.1 /TIER=Stack /STK=9 /UG=Rn.19596 /UG_TITLE=ESTs AW522471 adenosine deaminase, RNA-specific, B1 Adarb1 25367 NM_001111055 /// NM_001111056 /// NM_001111057 /// NM_012894 0006396 // RNA processing // inferred from electronic annotation /// 0006396 // RNA processing // not recorded /// 0006396 // RNA processing // inferred from sequence or structural similarity /// 0006397 // mRNA processing // inferred from electronic annotation /// 0016556 // mRNA modification // inferred from direct assay /// 0016556 // mRNA modification // non-traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from mutant phenotype /// 0005730 // nucleolus // inferred from mutant phenotype 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // not recorded /// 0003725 // double-stranded RNA binding // inferred from sequence or structural similarity /// 0003726 // double-stranded RNA adenosine deaminase activity // inferred from direct assay /// 0003726 // double-stranded RNA adenosine deaminase activity // not recorded /// 0003726 // double-stranded RNA adenosine deaminase activity // inferred from sequence or structural similarity /// 0003726 // double-stranded RNA adenosine deaminase activity // non-traceable author statement /// 0003726 // double-stranded RNA adenosine deaminase activity // inferred from electronic annotation /// 0004000 // adenosine deaminase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398371_at AI409075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409075 /DB_XREF=gi:4252579 /DB_XREF=EST237367 /CLONE=RKIDK33 /FEA=EST /CNT=14 /TID=Rn.1875.1 /TIER=Stack /STK=8 /UG=Rn.1875 /UG_TITLE=ESTs AI409075 coiled-coil domain containing 132 Ccdc132 312083 NM_001173511 /// XM_001064458 /// XM_231428 1398372_at BG380297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380297 /DB_XREF=gi:13304769 /DB_XREF=UI-R-CS0-btv-d-11-0-UI.s1 /CLONE=UI-R-CS0-btv-d-11-0-UI /FEA=EST /CNT=13 /TID=Rn.8249.1 /TIER=Stack /STK=8 /UG=Rn.8249 /UG_TITLE=ESTs, Weakly similar to S67312 probable membrane protein YDR255c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) BG380297 required for meiotic nuclear division 5 homolog B (S. cerevisiae) Rmnd5b 497900 NM_001017473 1398373_at AA799400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799400 /DB_XREF=gi:4131392 /DB_XREF=EST188897 /CLONE=RHEAA76 /FEA=EST /CNT=13 /TID=Rn.3666.1 /TIER=Stack /STK=8 /UG=Rn.3666 /UG_TITLE=ESTs AA799400 beta-1,3-N-acetylgalactosaminyltransferase 1 B3galnt1 310508 NM_001013158 0006486 // protein glycosylation // inferred from electronic annotation /// 0009312 // oligosaccharide biosynthetic process // inferred from electronic annotation /// 0009312 // oligosaccharide biosynthetic process // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008378 // galactosyltransferase activity // inferred from electronic annotation /// 0008499 // UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity // inferred from electronic annotation /// 0008499 // UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0047273 // galactosylgalactosylglucosylceramide beta-D-acetylgalactosaminyltransferase activity // inferred from electronic annotation 1398374_at BE101274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE101274 /DB_XREF=gi:8493185 /DB_XREF=UI-R-BJ1-aui-b-05-0-UI.s1 /CLONE=UI-R-BJ1-aui-b-05-0-UI /FEA=EST /CNT=12 /TID=Rn.18890.1 /TIER=Stack /STK=8 /UG=Rn.18890 /UG_TITLE=ESTs BE101274 leucine rich repeat containing 57 Lrrc57 311346 NM_001012354 0005515 // protein binding // inferred from electronic annotation 1398375_at BM392144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392144 /DB_XREF=gi:18192197 /DB_XREF=UI-R-DO1-ckp-c-20-0-UI.s1 /CLONE=UI-R-DO1-ckp-c-20-0-UI /FEA=EST /CNT=10 /TID=Rn.19415.1 /TIER=Stack /STK=8 /UG=Rn.19415 /UG_TITLE=ESTs, Weakly similar to METASTASIS-ASSOCIATED PROTEIN MTA1 (R.norvegicus) BM392144 metastasis associated 3 LOC100362346 100362346 XM_002726673 /// XM_002729591 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1398376_at AI104587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104587 /DB_XREF=gi:3708921 /DB_XREF=EST213876 /CLONE=RHECF66 /FEA=EST /CNT=11 /TID=Rn.15456.1 /TIER=Stack /STK=8 /UG=Rn.15456 /UG_TITLE=ESTs AI104587 rCG31672-like LOC100365921 100365921 XM_002726998 1398377_at AI172116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172116 /DB_XREF=gi:3712156 /DB_XREF=EST218111 /CLONE=RMUBV14 /FEA=EST /CNT=9 /TID=Rn.22488.1 /TIER=Stack /STK=8 /UG=Rn.22488 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) AI172116 zinc finger protein 672 Znf672 303165 NM_001007669 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398378_at AI231779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231779 /DB_XREF=gi:4135669 /DB_XREF=EST228467 /CLONE=RHECO19 /FEA=EST /CNT=9 /TID=Rn.3847.1 /TIER=Stack /STK=8 /UG=Rn.3847 /UG_TITLE=ESTs, Highly similar to GTK1 RAT GLUTATHIONE S-TRANSFERASE, MITOCHONDRIAL (R.norvegicus) AI231779 glutathione S-transferase kappa 1 Gstk1 297029 NM_181371 0006749 // glutathione metabolic process // inferred from electronic annotation /// 0006749 // glutathione metabolic process // not recorded 0005622 // intracellular // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005759 // mitochondrial matrix // inferred from direct assay /// 0005759 // mitochondrial matrix // traceable author statement /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0030288 // outer membrane-bounded periplasmic space // inferred from electronic annotation 0004364 // glutathione transferase activity // inferred from electronic annotation /// 0004364 // glutathione transferase activity // not recorded /// 0004602 // glutathione peroxidase activity // inferred from electronic annotation /// 0004602 // glutathione peroxidase activity // not recorded /// 0005515 // protein binding // not recorded /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1398379_at BM386296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386296 /DB_XREF=gi:18186349 /DB_XREF=UI-R-CN1-cjf-f-05-0-UI.s1 /CLONE=UI-R-CN1-cjf-f-05-0-UI /FEA=EST /CNT=8 /TID=Rn.51927.1 /TIER=Stack /STK=8 /UG=Rn.51927 /UG_TITLE=ESTs BM386296 1398380_at BF413643 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413643 /DB_XREF=gi:11401632 /DB_XREF=UI-R-CA0-bog-g-09-0-UI.s1 /CLONE=UI-R-CA0-bog-g-09-0-UI /FEA=EST /CNT=8 /TID=Rn.62409.1 /TIER=Stack /STK=8 /UG=Rn.62409 /UG_TITLE=ESTs BF413643 von Willebrand factor A domain containing 1 Vwa1 298683 NM_001013938 0030198 // extracellular matrix organization // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005614 // interstitial matrix // not recorded /// 0031012 // extracellular matrix // not recorded 1398381_at BE105417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105417 /DB_XREF=gi:8497519 /DB_XREF=UI-R-BO1-asn-e-07-0-UI.s1 /CLONE=UI-R-BO1-asn-e-07-0-UI /FEA=EST /CNT=8 /TID=Rn.21852.1 /TIER=Stack /STK=8 /UG=Rn.21852 /UG_TITLE=ESTs BE105417 1398382_at AI175556 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175556 /DB_XREF=gi:3726194 /DB_XREF=EST219111 /CLONE=RMUCO93 /FEA=EST /CNT=17 /TID=Rn.65040.1 /TIER=Stack /STK=7 /UG=Rn.65040 /UG_TITLE=ESTs AI175556 N-acetyltransferase 13 Nat13 288108 NM_001105881 0008152 // metabolic process // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation 1398383_at BI282164 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282164 /DB_XREF=gi:14932641 /DB_XREF=UI-R-CU0s-cbx-d-03-0-UI.s1 /CLONE=UI-R-CU0s-cbx-d-03-0-UI /FEA=EST /CNT=14 /TID=Rn.14673.1 /TIER=Stack /STK=7 /UG=Rn.14673 /UG_TITLE=ESTs BI282164 cytochrome b-561 Cyb561 303601 NM_001107056 0008152 // metabolic process // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0000293 // ferric-chelate reductase activity // not recorded 1398384_at BI298225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298225 /DB_XREF=gi:14974505 /DB_XREF=UI-R-CV2-chg-g-10-0-UI.s1 /CLONE=UI-R-CV2-chg-g-10-0-UI /FEA=EST /CNT=12 /TID=Rn.13826.1 /TIER=Stack /STK=7 /UG=Rn.13826 /UG_TITLE=ESTs, Highly similar to PMC1_MOUSE POLYMYOSITISSCLERODERMA AUTOANTIGEN 1 (AUTOANTIGEN PMSCL 1) (POLYMYOSITISSCLERODERMA AUTOANTIGEN 75 KDA) (PMSCL-75) (P75 POLYMYOSITIS-SCLERODERMA OVERLAP SYNDROME ASSOCIATED AUTOANTIGEN) (M.musculus) BI298225 exosome component 9 Exosc9 294975 NM_001025406 0006364 // rRNA processing // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation 0000178 // exosome (RNase complex) // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000175 // 3'-5'-exoribonuclease activity // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1398385_at AI169641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169641 /DB_XREF=gi:3709681 /DB_XREF=EST215529 /CLONE=RKIBV58 /FEA=EST /CNT=10 /TID=Rn.22227.1 /TIER=Stack /STK=7 /UG=Rn.22227 /UG_TITLE=ESTs, Weakly similar to B0513.2b.p (Caenorhabditis elegans) (C.elegans) AI169641 THO complex 7 homolog (Drosophila) Thoc7 305714 XM_001069423 /// XM_223828 0006406 // mRNA export from nucleus // not recorded /// 0046784 // intronless viral mRNA export from host nucleus // not recorded 0000346 // transcription export complex // not recorded /// 0000347 // THO complex // not recorded /// 0000445 // THO complex part of transcription export complex // not recorded /// 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded 1398386_at AW915951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW915951 /DB_XREF=gi:8081664 /DB_XREF=EST347255 /CLONE=RGIDE16 /FEA=EST /CNT=10 /TID=Rn.16458.1 /TIER=Stack /STK=7 /UG=Rn.16458 /UG_TITLE=ESTs AW915951 zinc finger, CCHC domain containing 6 Zcchc6 501515 XM_001060307 /// XM_001066334 0031123 // RNA 3'-end processing // not recorded /// 0071044 // histone mRNA catabolic process // not recorded 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050265 // RNA uridylyltransferase activity // not recorded 1398387_at AI009530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009530 /DB_XREF=gi:4133059 /DB_XREF=EST203981 /CLONE=RLUBE08 /FEA=EST /CNT=9 /TID=Rn.26456.1 /TIER=Stack /STK=7 /UG=Rn.26456 /UG_TITLE=ESTs AI009530 family with sequence similarity 198, member B Fam198b 310540 NM_199105 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1398388_at BF420628 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420628 /DB_XREF=gi:11408617 /DB_XREF=UI-R-BJ2-bpy-c-05-0-UI.s1 /CLONE=UI-R-BJ2-bpy-c-05-0-UI /FEA=EST /CNT=9 /TID=Rn.35299.1 /TIER=Stack /STK=7 /UG=Rn.35299 /UG_TITLE=ESTs BF420628 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398389_at AI236136 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236136 /DB_XREF=gi:4136166 /DB_XREF=EST232698 /CLONE=ROVDB84 /FEA=EST /CNT=8 /TID=Rn.37325.1 /TIER=Stack /STK=7 /UG=Rn.37325 /UG_TITLE=ESTs AI236136 1398390_at AA892854 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892854 /DB_XREF=gi:3019733 /DB_XREF=EST196657 /CLONE=RKIAY12 /FEA=EST /CNT=8 /TID=Rn.6917.1 /TIER=Stack /STK=7 /UG=Rn.6917 /UG_TITLE=ESTs, Weakly similar to BLC MOUSE B LYMPHOCYTE CHEMOATTRACTANT PRECURSOR (M.musculus) AA892854 chemokine (C-X-C motif) ligand 13 Cxcl13 498335 NM_001017496 0006955 // immune response // inferred from electronic annotation /// 0048535 // lymph node development // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // not recorded /// 0005615 // extracellular space // inferred from electronic annotation 0005125 // cytokine activity // inferred from electronic annotation /// 0008009 // chemokine activity // inferred from electronic annotation 1398391_at BG379297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379297 /DB_XREF=gi:13303769 /DB_XREF=UI-R-CS0-btu-a-09-0-UI.s1 /CLONE=UI-R-CS0-btu-a-09-0-UI /FEA=EST /CNT=8 /TID=Rn.35325.1 /TIER=Stack /STK=7 /UG=Rn.35325 /UG_TITLE=ESTs, Highly similar to MMR1 MOUSE POSSIBLE GTP-BINDING PROTEIN MMR1 (M.musculus) BG379297 guanine nucleotide binding protein-like 1 Gnl1 309593 NM_212500 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded 0005622 // intracellular // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1398392_at BF405932 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405932 /DB_XREF=gi:11393907 /DB_XREF=UI-R-CA1-bii-g-01-0-UI.s1 /CLONE=UI-R-CA1-bii-g-01-0-UI /FEA=EST /CNT=7 /TID=Rn.45252.1 /TIER=Stack /STK=7 /UG=Rn.45252 /UG_TITLE=ESTs BF405932 1398393_at BF414412 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414412 /DB_XREF=gi:11402396 /DB_XREF=UI-R-CA0-bpa-a-10-0-UI.s1 /CLONE=UI-R-CA0-bpa-a-10-0-UI /FEA=EST /CNT=7 /TID=Rn.45869.1 /TIER=Stack /STK=7 /UG=Rn.45869 /UG_TITLE=ESTs BF414412 mitogen-activated protein kinase 11 Mapk11 689314 NM_001109532 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006950 // response to stress // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004707 // MAP kinase activity // inferred from direct assay /// 0004707 // MAP kinase activity // inferred from electronic annotation /// 0004707 // MAP kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1398394_at BE108058 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108058 /DB_XREF=gi:8500163 /DB_XREF=UI-R-CA0-awz-h-09-0-UI.s1 /CLONE=UI-R-CA0-awz-h-09-0-UI /FEA=EST /CNT=7 /TID=Rn.50389.1 /TIER=Stack /STK=7 /UG=Rn.50389 /UG_TITLE=ESTs BE108058 1398395_at AW434272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434272 /DB_XREF=gi:6965579 /DB_XREF=UI-R-BJ0p-afw-c-06-0-UI.s1 /CLONE=UI-R-BJ0p-afw-c-06-0-UI /FEA=EST /CNT=25 /TID=Rn.29469.1 /TIER=Stack /STK=6 /UG=Rn.29469 /UG_TITLE=ESTs, Highly similar to ITP1_MOUSE Integrin beta-1 binding protein 1 (Bodenin) (M.musculus) AW434272 integrin beta 1 binding protein 1 Itgb1bp1 298914 NM_001106719 0007160 // cell-matrix adhesion // inferred from electronic annotation /// 0007160 // cell-matrix adhesion // not recorded /// 0007229 // integrin-mediated signaling pathway // inferred from electronic annotation 0001726 // ruffle // inferred from electronic annotation /// 0001726 // ruffle // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0030027 // lamellipodium // inferred from electronic annotation /// 0030027 // lamellipodium // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398396_at BF281315 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281315 /DB_XREF=gi:11212385 /DB_XREF=EST445906 /CLONE=RGIAD11 /FEA=EST /CNT=12 /TID=Rn.19457.1 /TIER=Stack /STK=6 /UG=Rn.19457 /UG_TITLE=ESTs BF281315 1398397_at AI407483 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407483 /DB_XREF=gi:4250987 /DB_XREF=EST235772 /CLONE=ROVDS96 /FEA=EST /CNT=12 /TID=Rn.25061.1 /TIER=Stack /STK=6 /UG=Rn.25061 /UG_TITLE=ESTs AI407483 1398398_at BI295741 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295741 /DB_XREF=gi:14959492 /DB_XREF=UI-R-DK0-cfa-a-10-0-UI.s1 /CLONE=UI-R-DK0-cfa-a-10-0-UI /FEA=EST /CNT=11 /TID=Rn.852.1 /TIER=Stack /STK=6 /UG=Rn.852 /UG_TITLE=ESTs BI295741 Homeo box A10 Hoxa10 368057 NM_001129878 0001501 // skeletal system development // inferred from electronic annotation /// 0001501 // skeletal system development // not recorded /// 0001656 // metanephros development // inferred from electronic annotation /// 0001658 // branching involved in ureteric bud morphogenesis // inferred from electronic annotation /// 0001759 // organ induction // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007275 // multicellular organismal development // not recorded /// 0009952 // anterior/posterior pattern formation // inferred from electronic annotation /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // inferred from electronic annotation /// 0009954 // proximal/distal pattern formation // not recorded /// 0010720 // positive regulation of cell development // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0032332 // positive regulation of chondrocyte differentiation // inferred from electronic annotation /// 0042733 // embryonic digit morphogenesis // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048589 // developmental growth // inferred from electronic annotation /// 0060351 // cartilage development involved in endochondral bone morphogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1398399_at AI102518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102518 /DB_XREF=gi:3707278 /DB_XREF=EST211807 /CLONE=REMBO68 /FEA=EST /CNT=9 /TID=Rn.21630.1 /TIER=Stack /STK=6 /UG=Rn.21630 /UG_TITLE=ESTs AI102518 similar to RIKEN cDNA 2310033P09 RGD1304587 303180 NM_001100551 1398400_at AW433595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW433595 /DB_XREF=gi:6964902 /DB_XREF=UI-R-BJ0p-afa-c-12-0-UI.s1 /CLONE=UI-R-BJ0p-afa-c-12-0-UI /FEA=EST /CNT=9 /TID=Rn.11563.1 /TIER=Stack /STK=6 /UG=Rn.11563 /UG_TITLE=ESTs AW433595 STE20-related kinase adaptor alpha Strada 303605 NM_182820 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006611 // protein export from nucleus // not recorded /// 0006611 // protein export from nucleus // inferred from sequence or structural similarity /// 0007049 // cell cycle // inferred from electronic annotation /// 0032147 // activation of protein kinase activity // inferred from direct assay /// 0032147 // activation of protein kinase activity // not recorded /// 0046320 // regulation of fatty acid oxidation // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0004672 // protein kinase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004674 // protein serine/threonine kinase activity // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1398401_at AI412183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412183 /DB_XREF=gi:4255687 /DB_XREF=EST240477 /CLONE=RKIEO05 /FEA=EST /CNT=8 /TID=Rn.18991.1 /TIER=Stack /STK=6 /UG=Rn.18991 /UG_TITLE=ESTs, Moderately similar to B56755 cytochrome P450 2C24, splice form p9 - rat (R.norvegicus) AI412183 tudor domain containing 3 Tdrd3 306066 NM_001012043 0006397 // mRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation 1398402_at AW144081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144081 /DB_XREF=gi:6163980 /DB_XREF=EST294377 /CLONE=RGICG95 /FEA=EST /CNT=8 /TID=Rn.18810.1 /TIER=Stack /STK=6 /UG=Rn.18810 /UG_TITLE=ESTs AW144081 forkhead box P4 Foxp4 363185 NM_001108788 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007507 // heart development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048617 // embryonic foregut morphogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1398403_at BG381546 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381546 /DB_XREF=gi:13306018 /DB_XREF=UI-R-CT0-buk-e-09-0-UI.s1 /CLONE=UI-R-CT0-buk-e-09-0-UI /FEA=EST /CNT=9 /TID=Rn.14626.1 /TIER=Stack /STK=6 /UG=Rn.14626 /UG_TITLE=ESTs BG381546 1398404_at BI284886 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI284886 /DB_XREF=gi:14937975 /DB_XREF=UI-R-CX0s-cct-d-08-0-UI.s1 /CLONE=UI-R-CX0s-cct-d-08-0-UI /FEA=EST /CNT=7 /TID=Rn.15481.1 /TIER=Stack /STK=6 /UG=Rn.15481 /UG_TITLE=ESTs, Moderately similar to JC7183 cathepsin Q (EC 3.4.22.-) precursor (accepted) - rat (R.norvegicus) BI284886 cathepsin Q-like 2 Ctsql2 408201 NM_001002813 0006508 // proteolysis // inferred from electronic annotation 0005764 // lysosome // non-traceable author statement 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation 1398405_at BI289917 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289917 /DB_XREF=gi:14947980 /DB_XREF=UI-R-DK0-cfp-g-06-0-UI.s1 /CLONE=UI-R-DK0-cfp-g-06-0-UI /FEA=EST /CNT=7 /TID=Rn.41741.1 /TIER=Stack /STK=6 /UG=Rn.41741 /UG_TITLE=ESTs BI289917 Septin 6 Sept6 691335 NM_001173429 /// XM_001077761 /// XM_002727663 0007049 // cell cycle // inferred from electronic annotation 0031105 // septin complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1398406_at AI102382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102382 /DB_XREF=gi:3707171 /DB_XREF=EST211671 /CLONE=RBRCC81 /FEA=EST /CNT=7 /TID=Rn.20398.1 /TIER=Stack /STK=6 /UG=Rn.20398 /UG_TITLE=ESTs AI102382 1398407_at AA801395 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA801395 /DB_XREF=gi:4131608 /DB_XREF=EST190892 /CLONE=RSPAA41 /FEA=EST /CNT=7 /TID=Rn.18340.1 /TIER=Stack /STK=6 /UG=Rn.18340 /UG_TITLE=ESTs AA801395 tumor necrosis factor, alpha-induced protein 8 Tnfaip8 307428 NM_001107387 0008152 // metabolic process // inferred from electronic annotation /// 0019987 // negative regulation of anti-apoptosis // not recorded 0005737 // cytoplasm // not recorded 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043027 // caspase inhibitor activity // not recorded 1398408_at AI948410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI948410 /DB_XREF=gi:5740720 /DB_XREF=612-7 /CLONE=UI__p612O2119Q3 /FEA=EST /CNT=7 /TID=Rn.24651.1 /TIER=Stack /STK=6 /UG=Rn.24651 /UG_TITLE=ESTs AI948410 armadillo repeat containing 3-like LOC100364294 100364294 XM_002725305 1398409_at AA850428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850428 /DB_XREF=gi:4131838 /DB_XREF=EST193195 /CLONE=ROVAF55 /FEA=EST /CNT=6 /TID=Rn.8589.1 /TIER=Stack /STK=6 /UG=Rn.8589 /UG_TITLE=ESTs AA850428 1398410_at AW535349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW535349 /DB_XREF=gi:7177763 /DB_XREF=UI-R-BS0-aoe-b-03-0-UI.s1 /CLONE=UI-R-BS0-aoe-b-03-0-UI /FEA=EST /CNT=6 /TID=Rn.7644.1 /TIER=Stack /STK=6 /UG=Rn.7644 /UG_TITLE=ESTs AW535349 ArfGAP with coiled-coil, ankyrin repeat and PH domains 3 Acap3 313772 NM_001107999 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1398411_at BI278952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278952 /DB_XREF=gi:14926299 /DB_XREF=UI-R-DB0-byt-a-10-0-UI.s1 /CLONE=UI-R-DB0-byt-a-10-0-UI /FEA=EST /CNT=6 /TID=Rn.7594.1 /TIER=Stack /STK=6 /UG=Rn.7594 /UG_TITLE=ESTs, Weakly similar to A53798 58K membrane-associated protein - rat (R.norvegicus) BI278952 1398412_at BF402250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402250 /DB_XREF=gi:11390225 /DB_XREF=UI-R-CA0-bhq-c-02-0-UI.s1 /CLONE=UI-R-CA0-bhq-c-02-0-UI /FEA=EST /CNT=6 /TID=Rn.53596.1 /TIER=Stack /STK=6 /UG=Rn.53596 /UG_TITLE=ESTs BF402250 1398413_at AW525177 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525177 /DB_XREF=gi:7167562 /DB_XREF=UI-R-BJ0p-aio-f-10-0-UI.s1 /CLONE=UI-R-BJ0p-aio-f-10-0-UI /FEA=EST /CNT=31 /TID=Rn.12160.1 /TIER=Stack /STK=30 /UG=Rn.12160 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) AW525177 zinc finger protein 444 Zfp444 292569 NM_001169143 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398414_at AI556031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556031 /DB_XREF=gi:4488394 /DB_XREF=UI-R-C2p-qz-g-12-0-UI.s1 /CLONE=UI-R-C2p-qz-g-12-0-UI /FEA=EST /CNT=19 /TID=Rn.19534.1 /TIER=Stack /STK=19 /UG=Rn.19534 /UG_TITLE=ESTs, Weakly similar to zinc finger protein, multitype 2 (Mus musculus) (M.musculus) AI556031 Similar to Zinc finger protein ZFPM1 (Zinc finger protein multitype 1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1) LOC691504 691504 XR_007127 1398415_at BG380708 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380708 /DB_XREF=gi:13305180 /DB_XREF=UI-R-CT0-bua-e-05-0-UI.s1 /CLONE=UI-R-CT0-bua-e-05-0-UI /FEA=EST /CNT=17 /TID=Rn.22144.1 /TIER=Stack /STK=13 /UG=Rn.22144 /UG_TITLE=ESTs BG380708 1398416_at AI008376 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI008376 /DB_XREF=gi:3222208 /DB_XREF=EST202827 /CLONE=REMAW51 /FEA=EST /CNT=12 /TID=Rn.13810.1 /TIER=Stack /STK=12 /UG=Rn.13810 /UG_TITLE=ESTs, Weakly similar to T34279 hypothetical protein F46H5.6 - Caenorhabditis elegans (C.elegans) AI008376 ribonuclease type III, nuclear Rnasen 310159 NM_001107655 0006364 // rRNA processing // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0016075 // rRNA catabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0004525 // ribonuclease III activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398417_at BE104341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104341 /DB_XREF=gi:8496441 /DB_XREF=UI-R-BX0-arn-f-08-0-UI.s1 /CLONE=UI-R-BX0-arn-f-08-0-UI /FEA=EST /CNT=14 /TID=Rn.11909.1 /TIER=Stack /STK=10 /UG=Rn.11909 /UG_TITLE=ESTs, Moderately similar to T50619 hypothetical protein DKFZp762M136.1 (H.sapiens) BE104341 fem-1 homolog a (C. elegans) Fem1a 316131 NM_001025706 0051438 // regulation of ubiquitin-protein ligase activity // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0005488 // binding // inferred from electronic annotation 1398418_at BF392904 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392904 /DB_XREF=gi:11377763 /DB_XREF=UI-R-CA0-bfq-f-01-0-UI.s1 /CLONE=UI-R-CA0-bfq-f-01-0-UI /FEA=EST /CNT=10 /TID=Rn.55362.1 /TIER=Stack /STK=9 /UG=Rn.55362 /UG_TITLE=ESTs, Weakly similar to v-ral simian leukemia viral oncogene homolog B (ras related) (Rattus norvegicus) (R.norvegicus) BF392904 RAS-like, family 10, member B Rasl10b 303382 NM_001191648 /// XM_001081057 /// XM_002727785 /// XM_220782 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1398419_at AI235956 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI235956 /DB_XREF=gi:3829462 /DB_XREF=EST232518 /CLONE=ROVCZ52 /FEA=EST /CNT=13 /TID=Rn.25213.1 /TIER=Stack /STK=8 /UG=Rn.25213 /UG_TITLE=ESTs AI235956 1398420_at BF393807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393807 /DB_XREF=gi:11378670 /DB_XREF=UI-R-CA0-bgv-b-08-0-UI.s1 /CLONE=UI-R-CA0-bgv-b-08-0-UI /FEA=EST /CNT=8 /TID=Rn.34812.1 /TIER=Stack /STK=8 /UG=Rn.34812 /UG_TITLE=ESTs BF393807 SMAD specific E3 ubiquitin protein ligase 2 Smurf2 303614 NM_001107061 0006464 // protein modification process // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0030509 // BMP signaling pathway // not recorded /// 0030579 // ubiquitin-dependent SMAD protein catabolic process // not recorded 0000151 // ubiquitin ligase complex // not recorded /// 0005622 // intracellular // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005160 // transforming growth factor beta receptor binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0046332 // SMAD binding // inferred from physical interaction /// 0046332 // SMAD binding // not recorded 1398421_at BM384203 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384203 /DB_XREF=gi:18184256 /DB_XREF=UI-R-DZ0-cks-l-22-0-UI.s1 /CLONE=UI-R-DZ0-cks-l-22-0-UI /FEA=EST /CNT=19 /TID=Rn.22934.1 /TIER=Stack /STK=7 /UG=Rn.22934 /UG_TITLE=ESTs BM384203 nuclear factor of activated T-cells 5 Nfat5 307820 NM_001107425 0001816 // cytokine production // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1398422_at BF418929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418929 /DB_XREF=gi:11406918 /DB_XREF=UI-R-BJ2-bqk-e-10-0-UI.s1 /CLONE=UI-R-BJ2-bqk-e-10-0-UI /FEA=EST /CNT=8 /TID=Rn.37858.1 /TIER=Stack /STK=7 /UG=Rn.37858 /UG_TITLE=ESTs, Moderately similar to RB20 MOUSE RAS-RELATED PROTEIN RAB-20 (M.musculus) BF418929 RAB20, member RAS oncogene family Rab20 689377 NM_001109535 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1398423_at BF401629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401629 /DB_XREF=gi:11389604 /DB_XREF=UI-R-CA0-bgm-h-01-0-UI.s1 /CLONE=UI-R-CA0-bgm-h-01-0-UI /FEA=EST /CNT=7 /TID=Rn.63614.1 /TIER=Stack /STK=7 /UG=Rn.63614 /UG_TITLE=ESTs, Moderately similar to STA6 MOUSE SIGNAL TRANSDUCER AND TRANSCRIPTION ACTIVATOR 6 (M.musculus) BF401629 1398424_at AA799515 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799515 /DB_XREF=gi:2862470 /DB_XREF=EST189012 /CLONE=RHEAC03 /FEA=EST /CNT=12 /TID=Rn.4063.1 /TIER=Stack /STK=6 /UG=Rn.4063 /UG_TITLE=ESTs AA799515 WD repeat and SOCS box-containing 2 Wsb2 288692 NM_001007616 0023034 // intracellular signaling pathway // inferred from electronic annotation 1398425_at AI101458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101458 /DB_XREF=gi:3706351 /DB_XREF=EST210747 /CLONE=RBRBP25 /FEA=EST /CNT=9 /TID=Rn.20088.1 /TIER=Stack /STK=6 /UG=Rn.20088 /UG_TITLE=ESTs AI101458 family with sequence similarity 110, member B Fam110b 500400 NM_001024341 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 1398426_at AI409065 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409065 /DB_XREF=gi:4252569 /DB_XREF=EST237357 /CLONE=RKIDO67 /FEA=EST /CNT=8 /TID=Rn.19205.1 /TIER=Stack /STK=6 /UG=Rn.19205 /UG_TITLE=ESTs AI409065 vasohibin 2 Vash2 498309 NM_001109082 0001938 // positive regulation of endothelial cell proliferation // not recorded /// 0045766 // positive regulation of angiogenesis // not recorded 0005737 // cytoplasm // not recorded 1398427_at AW526160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526160 /DB_XREF=gi:7168545 /DB_XREF=UI-R-BO1-aiz-h-04-0-UI.s1 /CLONE=UI-R-BO1-aiz-h-04-0-UI /FEA=EST /CNT=6 /TID=Rn.46103.1 /TIER=Stack /STK=6 /UG=Rn.46103 /UG_TITLE=ESTs AW526160 1398428_at BF410381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410381 /DB_XREF=gi:11398356 /DB_XREF=UI-R-CA1-bjw-h-01-0-UI.s1 /CLONE=UI-R-CA1-bjw-h-01-0-UI /FEA=EST /CNT=6 /TID=Rn.61682.1 /TIER=Stack /STK=6 /UG=Rn.61682 /UG_TITLE=ESTs BF410381 1398429_at AA893184 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893184 /DB_XREF=gi:3020063 /DB_XREF=EST196987 /CLONE=RKIBD26 /FEA=EST /CNT=10 /TID=Rn.19819.1 /TIER=ConsEnd /STK=5 /UG=Rn.19819 /UG_TITLE=ESTs, Weakly similar to DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX (R.norvegicus) AA893184 pyruvate dehydrogenase complex, component X Pdhx 311254 NM_001044242 0008152 // metabolic process // inferred from electronic annotation /// 0010510 // regulation of acetyl-CoA biosynthetic process from pyruvate // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation 1398430_at AW524711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524711 /DB_XREF=gi:7167096 /DB_XREF=UI-R-BO0-aib-e-04-0-UI.s1 /CLONE=UI-R-BO0-aib-e-04-0-UI /FEA=EST /CNT=9 /TID=Rn.8814.1 /TIER=ConsEnd /STK=5 /UG=Rn.8814 /UG_TITLE=ESTs AW524711 1398431_at BI294910 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294910 /DB_XREF=gi:14957826 /DB_XREF=UI-R-DK0-ced-e-10-0-UI.s1 /CLONE=UI-R-DK0-ced-e-10-0-UI /FEA=EST /CNT=8 /TID=Rn.22066.1 /TIER=ConsEnd /STK=5 /UG=Rn.22066 /UG_TITLE=ESTs, Weakly similar to CAH2 RAT CARBONIC ANHYDRASE II (R.norvegicus) BI294910 carbonic anhydrase 8 Car8 297814 NM_001009662 0006730 // one-carbon metabolic process // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // inferred from electronic annotation /// 0048015 // phosphoinositide-mediated signaling // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0004089 // carbonate dehydratase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398432_at AI236704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236704 /DB_XREF=gi:3830210 /DB_XREF=EST233266 /CLONE=ROVDJ53 /FEA=EST /CNT=8 /TID=Rn.11536.1 /TIER=ConsEnd /STK=5 /UG=Rn.11536 /UG_TITLE=ESTs AI236704 ankyrin repeat domain 28 Ankrd28 306264 XM_001057687 /// XM_224620 0005515 // protein binding // not recorded 1398433_at BG378056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378056 /DB_XREF=gi:13302528 /DB_XREF=UI-R-CT0-bvn-c-12-0-UI.s1 /CLONE=UI-R-CT0-bvn-c-12-0-UI /FEA=EST /CNT=7 /TID=Rn.22419.1 /TIER=ConsEnd /STK=5 /UG=Rn.22419 /UG_TITLE=ESTs BG378056 1398434_at BE107465 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107465 /DB_XREF=gi:8499570 /DB_XREF=UI-R-BS1-ayu-a-04-0-UI.s1 /CLONE=UI-R-BS1-ayu-a-04-0-UI /FEA=EST /CNT=12 /TID=Rn.8782.1 /TIER=ConsEnd /STK=5 /UG=Rn.8782 /UG_TITLE=ESTs BE107465 1398435_at BE112977 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112977 /DB_XREF=gi:8505082 /DB_XREF=UI-R-BJ1-awf-a-05-0-UI.s1 /CLONE=UI-R-BJ1-awf-a-05-0-UI /FEA=EST /CNT=6 /TID=Rn.46389.1 /TIER=ConsEnd /STK=5 /UG=Rn.46389 /UG_TITLE=ESTs, Weakly similar to S50862 organic cation transport protein OCT1 - rat (R.norvegicus) BE112977 solute carrier family 22, member 15 Slc22a15 310732 NM_001107707 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation 1398436_at BM388096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388096 /DB_XREF=gi:18188149 /DB_XREF=UI-R-DM1-cjz-f-15-0-UI.s1 /CLONE=UI-R-DM1-cjz-f-15-0-UI /FEA=EST /CNT=6 /TID=Rn.44762.1 /TIER=ConsEnd /STK=5 /UG=Rn.44762 /UG_TITLE=ESTs BM388096 ubiquitin specific peptidase 42 Usp42 288482 NM_001105909 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1398437_at BF412792 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412792 /DB_XREF=gi:11400781 /DB_XREF=UI-R-BT1-bnz-d-11-0-UI.s1 /CLONE=UI-R-BT1-bnz-d-11-0-UI /FEA=EST /CNT=6 /TID=Rn.33212.1 /TIER=ConsEnd /STK=5 /UG=Rn.33212 /UG_TITLE=ESTs BF412792 1398438_at BE118548 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE118548 /DB_XREF=gi:8510653 /DB_XREF=UI-R-BJ1-azq-a-07-0-UI.s1 /CLONE=UI-R-BJ1-azq-a-07-0-UI /FEA=EST /CNT=6 /TID=Rn.26618.1 /TIER=ConsEnd /STK=5 /UG=Rn.26618 /UG_TITLE=ESTs BE118548 GTP binding protein 3 Gtpbp3 290633 NM_001011919 0006400 // tRNA modification // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1398439_a_at AI070593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070593 /DB_XREF=gi:3396844 /DB_XREF=UI-R-C2-mr-f-03-0-UI.s1 /CLONE=UI-R-C2-mr-f-03-0-UI /FEA=EST /CNT=2 /TID=Rn.41300.2 /TIER=ConsEnd /STK=1 /UG=Rn.41300 /UG_TITLE=ESTs, Weakly similar to ORC6_HUMAN ORIGIN RECOGNITION COMPLEX SUBUNIT 6 (H.sapiens) AI070593 origin recognition complex, subunit 6 like (yeast) Orc6l 291927 NM_001033690 0006260 // DNA replication // inferred from electronic annotation /// 0006260 // DNA replication // not recorded 0000808 // origin recognition complex // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005664 // nuclear origin of replication recognition complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398440_at BI292166 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292166 /DB_XREF=gi:14952406 /DB_XREF=UI-R-DN0-civ-c-05-0-UI.s1 /CLONE=UI-R-DN0-civ-c-05-0-UI /FEA=EST /CNT=5 /TID=Rn.8700.1 /TIER=ConsEnd /STK=5 /UG=Rn.8700 /UG_TITLE=ESTs BI292166 splicing factor, arginine/serine-rich 18 Sfrs18 297942 NM_001025274 1398441_at AA957410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957410 /DB_XREF=gi:4277300 /DB_XREF=UI-R-E1-fu-d-03-0-UI.s1 /CLONE=UI-R-E1-fu-d-03-0-UI /FEA=EST /CNT=5 /TID=Rn.9067.1 /TIER=ConsEnd /STK=5 /UG=Rn.9067 /UG_TITLE=ESTs, Highly similar to SH2SH3 adaptor protein NCK-beta (H.sapiens) AA957410 NCK adaptor protein 2 Nck2 316369 NM_001108216 0007015 // actin filament organization // not recorded /// 0016477 // cell migration // not recorded /// 0030032 // lamellipodium assembly // not recorded /// 0030838 // positive regulation of actin filament polymerization // not recorded /// 0042102 // positive regulation of T cell proliferation // not recorded 0012506 // vesicle membrane // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1398442_at BF418993 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF418993 /DB_XREF=gi:11406977 /DB_XREF=UI-R-BJ2-bqm-c-05-0-UI.s1 /CLONE=UI-R-BJ2-bqm-c-05-0-UI /FEA=EST /CNT=5 /TID=Rn.51829.1 /TIER=ConsEnd /STK=5 /UG=Rn.51829 /UG_TITLE=ESTs BF418993 hypothetical protein LOC690422 LOC690422 690422 XM_001072932 /// XM_002726780 /// XM_002726781 /// XM_002729730 1398443_at AI602719 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI602719 /DB_XREF=gi:4611880 /DB_XREF=UI-R-AE0-xk-c-04-0-UI.s1 /CLONE=UI-R-AE0-xk-c-04-0-UI /FEA=EST /CNT=5 /TID=Rn.20863.1 /TIER=ConsEnd /STK=5 /UG=Rn.20863 /UG_TITLE=ESTs AI602719 Leucine rich repeat containing 4B Lrrc4b 308571 XM_001077685 /// XM_218615 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0042734 // presynaptic membrane // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1398444_at BF405417 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405417 /DB_XREF=gi:11393392 /DB_XREF=UI-R-CA1-bix-a-21-0-UI.s1 /CLONE=UI-R-CA1-bix-a-21-0-UI /FEA=EST /CNT=5 /TID=Rn.62847.1 /TIER=ConsEnd /STK=5 /UG=Rn.62847 /UG_TITLE=ESTs BF405417 similar to RIKEN cDNA 5133400G04 RGD1311742 291676 NM_001025636 0006350 // transcription // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1398445_at BF420311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420311 /DB_XREF=gi:11408300 /DB_XREF=UI-R-BJ2-bpl-d-06-0-UI.s1 /CLONE=UI-R-BJ2-bpl-d-06-0-UI /FEA=EST /CNT=5 /TID=Rn.49222.1 /TIER=ConsEnd /STK=5 /UG=Rn.49222 /UG_TITLE=ESTs BF420311 1398446_at BG376030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376030 /DB_XREF=gi:13300502 /DB_XREF=UI-R-CS0-bts-f-05-0-UI.s1 /CLONE=UI-R-CS0-bts-f-05-0-UI /FEA=EST /CNT=9 /TID=Rn.32304.1 /TIER=ConsEnd /STK=4 /UG=Rn.32304 /UG_TITLE=ESTs BG376030 family with sequence similarity 189, member B Fam189b 310640 NM_001107690 0016021 // integral to membrane // inferred from electronic annotation 0050699 // WW domain binding // not recorded 1398447_at AA801323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA801323 /DB_XREF=gi:4131596 /DB_XREF=EST190820 /CLONE=RPLAB89 /FEA=EST /CNT=8 /TID=Rn.22049.1 /TIER=ConsEnd /STK=4 /UG=Rn.22049 /UG_TITLE=ESTs AA801323 1398448_at BE108346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108346 /DB_XREF=gi:8500451 /DB_XREF=UI-R-BS1-ayv-c-01-0-UI.s1 /CLONE=UI-R-BS1-ayv-c-01-0-UI /FEA=EST /CNT=7 /TID=Rn.20842.1 /TIER=ConsEnd /STK=4 /UG=Rn.20842 /UG_TITLE=ESTs BE108346 1398449_at AA849031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849031 /DB_XREF=gi:2936571 /DB_XREF=EST191793 /CLONE=RLUAJ69 /FEA=EST /CNT=8 /TID=Rn.6416.1 /TIER=ConsEnd /STK=4 /UG=Rn.6416 /UG_TITLE=ESTs AA849031 1398450_at BI291373 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291373 /DB_XREF=gi:14950856 /DB_XREF=UI-R-CV2-cgp-c-12-0-UI.s1 /CLONE=UI-R-CV2-cgp-c-12-0-UI /FEA=EST /CNT=6 /TID=Rn.45848.1 /TIER=ConsEnd /STK=4 /UG=Rn.45848 /UG_TITLE=ESTs BI291373 1398451_at BI296494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296494 /DB_XREF=gi:14960972 /DB_XREF=UI-R-CV2-cgr-h-03-0-UI.s1 /CLONE=UI-R-CV2-cgr-h-03-0-UI /FEA=EST /CNT=6 /TID=Rn.12417.1 /TIER=ConsEnd /STK=4 /UG=Rn.12417 /UG_TITLE=ESTs BI296494 1398452_at BI298587 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI298587 /DB_XREF=gi:14974867 /DB_XREF=UI-R-CV2-chl-b-11-0-UI.s1 /CLONE=UI-R-CV2-chl-b-11-0-UI /FEA=EST /CNT=6 /TID=Rn.18646.1 /TIER=ConsEnd /STK=4 /UG=Rn.18646 /UG_TITLE=ESTs, Moderately similar to T13614 N-acetyltransferase homolog EG:8D8.6 - fruit fly (D.melanogaster) BI298587 similar to chromosome 14 open reading frame 35 RGD1559923 498489 NM_001109099 0008152 // metabolic process // inferred from electronic annotation 0008080 // N-acetyltransferase activity // inferred from electronic annotation 1398453_at AI145037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145037 /DB_XREF=gi:3666836 /DB_XREF=UI-R-BT0-pr-h-08-0-UI.s1 /CLONE=UI-R-BT0-pr-h-08-0-UI /FEA=EST /CNT=6 /TID=Rn.24862.1 /TIER=ConsEnd /STK=4 /UG=Rn.24862 /UG_TITLE=ESTs, Weakly similar to KEAP_RAT KELCH-LIKE ECH-ASSOCIATED PROTEIN 1 (CYTOSOLIC INHIBITOR OF NRF2) (INRF2) (R.norvegicus) AI145037 kelch-like 36 (Drosophila) Klhl36 498957 NM_001017511 0005515 // protein binding // inferred from electronic annotation 1398454_at BM389272 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389272 /DB_XREF=gi:18189325 /DB_XREF=UI-R-DZ0-cko-d-04-0-UI.s1 /CLONE=UI-R-DZ0-cko-d-04-0-UI /FEA=EST /CNT=5 /TID=Rn.47991.1 /TIER=ConsEnd /STK=4 /UG=Rn.47991 /UG_TITLE=ESTs BM389272 1398455_at BG379973 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379973 /DB_XREF=gi:13304445 /DB_XREF=UI-R-CS0-bto-d-10-0-UI.s1 /CLONE=UI-R-CS0-bto-d-10-0-UI /FEA=EST /CNT=5 /TID=Rn.23608.1 /TIER=ConsEnd /STK=4 /UG=Rn.23608 /UG_TITLE=ESTs, Weakly similar to T47144 hypothetical protein DKFZp761E1347.1 (H.sapiens) BG379973 zinc finger, DHHC-type containing 13 Zdhhc13 365252 NM_001039037 0008152 // metabolic process // not recorded /// 0015693 // magnesium ion transport // not recorded /// 0034220 // ion transmembrane transport // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0000139 // Golgi membrane // not recorded /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0030660 // Golgi-associated vesicle membrane // inferred from electronic annotation /// 0030660 // Golgi-associated vesicle membrane // not recorded 0004871 // signal transducer activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0015095 // magnesium ion transmembrane transporter activity // inferred from electronic annotation /// 0015095 // magnesium ion transmembrane transporter activity // not recorded /// 0016409 // palmitoyltransferase activity // inferred from electronic annotation /// 0016409 // palmitoyltransferase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1398456_a_at BF389045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389045 /DB_XREF=gi:11373872 /DB_XREF=UI-R-BS2-bdh-b-11-0-UI.s1 /CLONE=UI-R-BS2-bdh-b-11-0-UI /FEA=EST /CNT=5 /TID=Rn.29073.1 /TIER=ConsEnd /STK=4 /UG=Rn.29073 /UG_TITLE=ESTs BF389045 1398457_at AI146156 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146156 /DB_XREF=gi:3667955 /DB_XREF=UI-R-BT0-qb-c-03-0-UI.s1 /CLONE=UI-R-BT0-qb-c-03-0-UI /FEA=EST /CNT=5 /TID=Rn.24016.1 /TIER=ConsEnd /STK=4 /UG=Rn.24016 /UG_TITLE=ESTs AI146156 1398458_at BE104506 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104506 /DB_XREF=gi:8496606 /DB_XREF=UI-R-BX0-arq-b-11-0-UI.s1 /CLONE=UI-R-BX0-arq-b-11-0-UI /FEA=EST /CNT=5 /TID=Rn.16117.1 /TIER=ConsEnd /STK=4 /UG=Rn.16117 /UG_TITLE=ESTs, Moderately similar to T50615 hypothetical protein DKFZp761G1515.1 (H.sapiens) BE104506 WNK lysine deficient protein kinase 2 Wnk2 306811 NM_001191556 /// XM_002725240 /// XM_002728460 /// XM_002728461 /// XM_225204 0006468 // protein phosphorylation // inferred from electronic annotation 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1398459_at BF405130 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405130 /DB_XREF=gi:11393105 /DB_XREF=UI-R-CA1-biq-a-08-0-UI.s1 /CLONE=UI-R-CA1-biq-a-08-0-UI /FEA=EST /CNT=4 /TID=Rn.52042.1 /TIER=ConsEnd /STK=4 /UG=Rn.52042 /UG_TITLE=ESTs BF405130 calcium channel, voltage-dependent, P/Q type, alpha 1A subunit Cacna1a 25398 NM_012918 0000096 // sulfur amino acid metabolic process // inferred from electronic annotation /// 0000096 // sulfur amino acid metabolic process // not recorded /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006006 // glucose metabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from mutant phenotype /// 0006816 // calcium ion transport // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // not recorded /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from sequence or structural similarity /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // not recorded /// 0007268 // synaptic transmission // inferred from mutant phenotype /// 0007268 // synaptic transmission // not recorded /// 0007268 // synaptic transmission // inferred from electronic annotation /// 0007270 // nerve-nerve synaptic transmission // not recorded /// 0007270 // nerve-nerve synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // inferred from electronic annotation /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0007416 // synapse assembly // inferred from electronic annotation /// 0007416 // synapse assembly // not recorded /// 0007628 // adult walking behavior // inferred from electronic annotation /// 0007628 // adult walking behavior // not recorded /// 0008219 // cell death // inferred from electronic annotation /// 0008219 // cell death // not recorded /// 0014051 // gamma-aminobutyric acid secretion // inferred from electronic annotation /// 0014051 // gamma-aminobutyric acid secretion // not recorded /// 0014056 // regulation of acetylcholine secretion // inferred from electronic annotation /// 0014056 // regulation of acetylcholine secretion // not recorded /// 0016049 // cell growth // inferred from electronic annotation /// 0016049 // cell growth // not recorded /// 0017156 // calcium ion-dependent exocytosis // not recorded /// 0017156 // calcium ion-dependent exocytosis // inferred from electronic annotation /// 0017158 // regulation of calcium ion-dependent exocytosis // inferred from electronic annotation /// 0017158 // regulation of calcium ion-dependent exocytosis // not recorded /// 0019226 // transmission of nerve impulse // not recorded /// 0019226 // transmission of nerve impulse // inferred from electronic annotation /// 0021522 // spinal cord motor neuron differentiation // inferred from electronic annotation /// 0021522 // spinal cord motor neuron differentiation // not recorded /// 0021590 // cerebellum maturation // inferred from electronic annotation /// 0021590 // cerebellum maturation // not recorded /// 0021679 // cerebellar molecular layer development // inferred from electronic annotation /// 0021679 // cerebellar molecular layer development // not recorded /// 0021680 // cerebellar Purkinje cell layer development // inferred from electronic annotation /// 0021680 // cerebellar Purkinje cell layer development // not recorded /// 0021702 // cerebellar Purkinje cell differentiation // inferred from electronic annotation /// 0021702 // cerebellar Purkinje cell differentiation // not recorded /// 0021750 // vestibular nucleus development // inferred from electronic annotation /// 0021750 // vestibular nucleus development // not recorded /// 0021953 // central nervous system neuron differentiation // not recorded /// 0021953 // central nervous system neuron differentiation // inferred from electronic annotation /// 0030644 // cellular chloride ion homeostasis // inferred from electronic annotation /// 0030644 // cellular chloride ion homeostasis // not recorded /// 0032353 // negative regulation of hormone biosynthetic process // inferred from electronic annotation /// 0032353 // negative regulation of hormone biosynthetic process // not recorded /// 0035249 // synaptic transmission, glutamatergic // inferred from electronic annotation /// 0035249 // synaptic transmission, glutamatergic // not recorded /// 0042133 // neurotransmitter metabolic process // inferred from electronic annotation /// 0042133 // neurotransmitter metabolic process // not recorded /// 0042391 // regulation of membrane potential // not recorded /// 0042391 // regulation of membrane potential // inferred from electronic annotation /// 0042403 // thyroid hormone metabolic process // not recorded /// 0042445 // hormone metabolic process // inferred from electronic annotation /// 0042445 // hormone metabolic process // not recorded /// 0043113 // receptor clustering // inferred from electronic annotation /// 0043113 // receptor clustering // not recorded /// 0043524 // negative regulation of neuron apoptosis // inferred from electronic annotation /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0048265 // response to pain // not recorded /// 0048265 // response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // inferred from electronic annotation /// 0048266 // behavioral response to pain // not recorded /// 0048791 // calcium ion-dependent exocytosis of neurotransmitter // inferred from electronic annotation /// 0048791 // calcium ion-dependent exocytosis of neurotransmitter // not recorded /// 0048813 // dendrite morphogenesis // inferred from electronic annotation /// 0048813 // dendrite morphogenesis // not recorded /// 0050770 // regulation of axonogenesis // inferred from electronic annotation /// 0050770 // regulation of axonogenesis // not recorded /// 0050877 // neurological system process // not recorded /// 0050877 // neurological system process // inferred from electronic annotation /// 0050883 // musculoskeletal movement, spinal reflex action // inferred from electronic annotation /// 0050883 // musculoskeletal movement, spinal reflex action // not recorded /// 0050885 // neuromuscular process controlling balance // inferred from electronic annotation /// 0050885 // neuromuscular process controlling balance // not recorded /// 0050905 // neuromuscular process // not recorded /// 0050905 // neuromuscular process // inferred from electronic annotation /// 0051899 // membrane depolarization // inferred from electronic annotation /// 0051899 // membrane depolarization // not recorded /// 0051925 // regulation of calcium ion transport via voltage-gated calcium channel activity // not recorded /// 0051932 // synaptic transmission, GABAergic // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0060024 // rhythmic synaptic transmission // inferred from electronic annotation /// 0060024 // rhythmic synaptic transmission // not recorded /// 0070588 // calcium ion transmembrane transport // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from mutant phenotype /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // inferred from direct assay /// 0005891 // voltage-gated calcium channel complex // inferred from electronic annotation /// 0005891 // voltage-gated calcium channel complex // not recorded /// 0005891 // voltage-gated calcium channel complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0030425 // dendrite // not recorded /// 0042995 // cell projection // inferred from electronic annotation /// 0042995 // cell projection // not recorded /// 0043025 // neuronal cell body // not recorded /// 0043025 // neuronal cell body // inferred from electronic annotation /// 0043204 // perikaryon // inferred from direct assay 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // inferred from direct assay /// 0005245 // voltage-gated calcium channel activity // inferred from electronic annotation /// 0005245 // voltage-gated calcium channel activity // not recorded /// 0005245 // voltage-gated calcium channel activity // inferred from sequence or structural similarity /// 0005245 // voltage-gated calcium channel activity // traceable author statement /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from direct assay /// 0008331 // high voltage-gated calcium channel activity // inferred from electronic annotation /// 0008331 // high voltage-gated calcium channel activity // not recorded /// 0019905 // syntaxin binding // inferred from electronic annotation /// 0019905 // syntaxin binding // not recorded 1398460_at AI146147 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146147 /DB_XREF=gi:3667946 /DB_XREF=UI-R-BT0-qb-a-05-0-UI.s1 /CLONE=UI-R-BT0-qb-a-05-0-UI /FEA=EST /CNT=4 /TID=Rn.36574.1 /TIER=ConsEnd /STK=4 /UG=Rn.36574 /UG_TITLE=ESTs AI146147 hypothetical protein LOC100360419 /// similar to KIAA1731 protein LOC100360419 /// RGD1311723 100360419 /// 363018 XM_001069542 /// XM_002729872 /// XM_343351 1398461_at BF393839 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF393839 /DB_XREF=gi:11378702 /DB_XREF=UI-R-CA0-bgv-e-10-0-UI.s1 /CLONE=UI-R-CA0-bgv-e-10-0-UI /FEA=EST /CNT=4 /TID=Rn.59500.1 /TIER=ConsEnd /STK=4 /UG=Rn.59500 /UG_TITLE=ESTs BF393839 1398462_at BE120209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120209 /DB_XREF=gi:8512314 /DB_XREF=UI-R-CA0-bap-g-11-0-UI.s1 /CLONE=UI-R-CA0-bap-g-11-0-UI /FEA=EST /CNT=4 /TID=Rn.63607.1 /TIER=ConsEnd /STK=4 /UG=Rn.63607 /UG_TITLE=ESTs BE120209 1398463_at BG375937 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375937 /DB_XREF=gi:13300409 /DB_XREF=UI-R-CU0-bur-d-07-0-UI.s1 /CLONE=UI-R-CU0-bur-d-07-0-UI /FEA=EST /CNT=4 /TID=Rn.13470.1 /TIER=ConsEnd /STK=4 /UG=Rn.13470 /UG_TITLE=ESTs BG375937 1398464_at AI575255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575255 /DB_XREF=gi:4559631 /DB_XREF=UI-R-Y0-vc-d-07-0-UI.s1 /CLONE=UI-R-Y0-vc-d-07-0-UI /FEA=EST /CNT=4 /TID=Rn.26820.1 /TIER=ConsEnd /STK=4 /UG=Rn.26820 /UG_TITLE=ESTs AI575255 1398465_at AW526224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526224 /DB_XREF=gi:7168609 /DB_XREF=UI-R-BO1-aju-e-10-0-UI.s1 /CLONE=UI-R-BO1-aju-e-10-0-UI /FEA=EST /CNT=4 /TID=Rn.46126.1 /TIER=ConsEnd /STK=4 /UG=Rn.46126 /UG_TITLE=ESTs AW526224 leucine rich repeat containing 23 Lrrc23 312707 NM_001013165 0005515 // protein binding // inferred from electronic annotation 1398466_at BG375382 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375382 /DB_XREF=gi:13299854 /DB_XREF=UI-R-CV1-bsz-g-02-0-UI.s1 /CLONE=UI-R-CV1-bsz-g-02-0-UI /FEA=EST /CNT=4 /TID=Rn.73080.1 /TIER=ConsEnd /STK=4 /UG=Rn.73080 /UG_TITLE=ESTs, Weakly similar to calreticulin (Rattus norvegicus) (R.norvegicus) BG375382 calreticulin 4 Calr4 689537 XM_001071131 0006457 // protein folding // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1398467_at BF396623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396623 /DB_XREF=gi:11381598 /DB_XREF=UI-R-BS2-bea-c-05-0-UI.s1 /CLONE=UI-R-BS2-bea-c-05-0-UI /FEA=EST /CNT=4 /TID=Rn.63714.1 /TIER=ConsEnd /STK=4 /UG=Rn.63714 /UG_TITLE=ESTs BF396623 1398468_at BF553076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF553076 /DB_XREF=gi:11662806 /DB_XREF=UI-R-C2-mu-f-04-0-UI.r1 /CLONE=UI-R-C2-mu-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.35125.1 /TIER=ConsEnd /STK=4 /UG=Rn.35125 /UG_TITLE=ESTs BF553076 1398469_at BG372864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372864 /DB_XREF=gi:13269401 /DB_XREF=UI-R-CV1-bsa-f-08-0-UI.s1 /CLONE=UI-R-CV1-bsa-f-08-0-UI /FEA=EST /CNT=9 /TID=Rn.22079.2 /TIER=ConsEnd /STK=3 /UG=Rn.22079 /UG_TITLE=ESTs, Highly similar to A36492 phosphoprotein phosphatase (R.norvegicus) BG372864 protein phosphatase 3, catalytic subunit, gamma isoform Ppp3cc 171378 NM_134367 0007420 // brain development // inferred from expression pattern /// 0008633 // activation of pro-apoptotic gene products // not recorded 0005829 // cytosol // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from electronic annotation 1398470_at BE104945 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104945 /DB_XREF=gi:8497046 /DB_XREF=UI-R-BX0-arw-e-07-0-UI.s1 /CLONE=UI-R-BX0-arw-e-07-0-UI /FEA=EST /CNT=9 /TID=Rn.50699.1 /TIER=ConsEnd /STK=3 /UG=Rn.50699 /UG_TITLE=ESTs BE104945 rCG30099-like LOC100362909 100362909 XM_002729430 1398471_at BF288063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288063 /DB_XREF=gi:11219133 /DB_XREF=EST452654 /CLONE=RGIGP09 /FEA=EST /CNT=7 /TID=Rn.40661.1 /TIER=ConsEnd /STK=3 /UG=Rn.40661 /UG_TITLE=ESTs BF288063 1398472_at AA925995 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925995 /DB_XREF=gi:4237186 /DB_XREF=UI-R-A1-es-b-04-0-UI.s1 /CLONE=UI-R-A1-es-b-04-0-UI /FEA=EST /CNT=7 /TID=Rn.44164.1 /TIER=ConsEnd /STK=3 /UG=Rn.44164 /UG_TITLE=ESTs AA925995 progressive external ophthalmoplegia 1 Peo1 309441 NM_001107599 0006260 // DNA replication // inferred from electronic annotation /// 0006264 // mitochondrial DNA replication // not recorded /// 0006268 // DNA unwinding involved in replication // not recorded /// 0006390 // transcription from mitochondrial promoter // not recorded /// 0034214 // protein hexamerization // not recorded /// 0051260 // protein homooligomerization // not recorded 0005739 // mitochondrion // not recorded /// 0042645 // mitochondrial nucleoid // not recorded 0002020 // protease binding // not recorded /// 0003678 // DNA helicase activity // inferred from electronic annotation /// 0003678 // DNA helicase activity // not recorded /// 0003697 // single-stranded DNA binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0043139 // 5'-3' DNA helicase activity // not recorded 1398473_at BI290651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290651 /DB_XREF=gi:14949421 /DB_XREF=UI-R-DK0-cfx-g-07-0-UI.s1 /CLONE=UI-R-DK0-cfx-g-07-0-UI /FEA=EST /CNT=6 /TID=Rn.19119.1 /TIER=ConsEnd /STK=3 /UG=Rn.19119 /UG_TITLE=ESTs BI290651 biogenesis of lysosomal organelles complex-1, subunit 2 Bloc1s2 293938 NM_001037349 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0042981 // regulation of apoptosis // inferred from electronic annotation /// 0042981 // regulation of apoptosis // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 0000930 // gamma-tubulin complex // inferred from electronic annotation /// 0000930 // gamma-tubulin complex // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // inferred from direct assay /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0031083 // BLOC-1 complex // inferred from electronic annotation /// 0031083 // BLOC-1 complex // not recorded /// 0055037 // recycling endosome // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0043015 // gamma-tubulin binding // inferred from electronic annotation /// 0043015 // gamma-tubulin binding // not recorded 1398474_at BI300593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI300593 /DB_XREF=gi:14976873 /DB_XREF=UI-R-CV2-cim-h-02-0-UI.s1 /CLONE=UI-R-CV2-cim-h-02-0-UI /FEA=EST /CNT=6 /TID=Rn.21129.1 /TIER=ConsEnd /STK=3 /UG=Rn.21129 /UG_TITLE=ESTs BI300593 similar to Adenosine deaminase CG11994-PA LOC311352 311352 NM_001014047 0009168 // purine ribonucleoside monophosphate biosynthetic process // inferred from electronic annotation 0019239 // deaminase activity // inferred from electronic annotation 1398475_at AI172076 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172076 /DB_XREF=gi:3712116 /DB_XREF=EST218071 /CLONE=RMUBU61 /FEA=EST /CNT=5 /TID=Rn.24302.1 /TIER=ConsEnd /STK=3 /UG=Rn.24302 /UG_TITLE=ESTs AI172076 aspartyl-tRNA synthetase 2 (mitochondrial) Dars2 304919 NM_001034143 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006422 // aspartyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004815 // aspartate-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1398476_at AW527349 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527349 /DB_XREF=gi:7169763 /DB_XREF=UI-R-BO1-ajj-c-08-0-UI.s1 /CLONE=UI-R-BO1-ajj-c-08-0-UI /FEA=EST /CNT=5 /TID=Rn.64183.1 /TIER=ConsEnd /STK=3 /UG=Rn.64183 /UG_TITLE=ESTs AW527349 vinculin Vcl 305679 NM_001107248 0002009 // morphogenesis of an epithelium // not recorded /// 0006936 // muscle contraction // not recorded /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // not recorded /// 0030032 // lamellipodium assembly // inferred from electronic annotation /// 0030032 // lamellipodium assembly // not recorded /// 0030334 // regulation of cell migration // inferred from electronic annotation /// 0030334 // regulation of cell migration // not recorded /// 0034333 // adherens junction assembly // not recorded /// 0034394 // protein localization at cell surface // not recorded /// 0043297 // apical junction assembly // inferred from electronic annotation /// 0043297 // apical junction assembly // not recorded /// 0090136 // epithelial cell-cell adhesion // not recorded 0001725 // stress fiber // inferred from direct assay /// 0005576 // extracellular region // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005884 // actin filament // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0005912 // adherens junction // inferred from electronic annotation /// 0005912 // adherens junction // not recorded /// 0005913 // cell-cell adherens junction // not recorded /// 0005916 // fascia adherens // inferred from electronic annotation /// 0005916 // fascia adherens // not recorded /// 0005925 // focal adhesion // inferred from direct assay /// 0005925 // focal adhesion // not recorded /// 0005925 // focal adhesion // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0043034 // costamere // inferred from electronic annotation /// 0043034 // costamere // not recorded /// 0043234 // protein complex // not recorded /// 0043234 // protein complex // inferred from electronic annotation 0002166 // beta-dystroglycan binding // inferred from electronic annotation /// 0002166 // beta-dystroglycan binding // not recorded /// 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017048 // Rho GTPase binding // inferred from physical interaction /// 0045294 // alpha-catenin binding // inferred from electronic annotation /// 0045294 // alpha-catenin binding // not recorded 1398477_at BF407895 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407895 /DB_XREF=gi:11395870 /DB_XREF=UI-R-C3-sx-a-03-0-UI.s2 /CLONE=UI-R-C3-sx-a-03-0-UI /FEA=EST /CNT=5 /TID=Rn.47916.1 /TIER=ConsEnd /STK=3 /UG=Rn.47916 /UG_TITLE=ESTs BF407895 1398478_at AI137322 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137322 /DB_XREF=gi:3638099 /DB_XREF=UI-R-C2p-ol-h-05-0-UI.s1 /CLONE=UI-R-C2p-ol-h-05-0-UI /FEA=EST /CNT=5 /TID=Rn.23537.1 /TIER=ConsEnd /STK=3 /UG=Rn.23537 /UG_TITLE=ESTs, Weakly similar to MLH3_HUMAN DNA MISMATCH REPAIR PROTEIN MLH3 (MUTL PROTEIN HOMOLOG 3) (H.sapiens) AI137322 mutL homolog 3 (E. coli) Mlh3 314320 NM_001108043 0006298 // mismatch repair // inferred from electronic annotation /// 0006298 // mismatch repair // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0007130 // synaptonemal complex assembly // not recorded /// 0007140 // male meiosis // not recorded /// 0007144 // female meiosis I // not recorded /// 0008104 // protein localization // not recorded 0000793 // condensed chromosome // not recorded /// 0000795 // synaptonemal complex // not recorded /// 0001673 // male germ cell nucleus // not recorded /// 0005712 // chiasma // not recorded 0003682 // chromatin binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0019237 // centromeric DNA binding // not recorded /// 0030983 // mismatched DNA binding // inferred from electronic annotation 1398479_at AI072862 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI072862 /DB_XREF=gi:3399056 /DB_XREF=UI-R-Y0-lw-h-12-0-UI.s1 /CLONE=UI-R-Y0-lw-h-12-0-UI /FEA=EST /CNT=5 /TID=Rn.20282.1 /TIER=ConsEnd /STK=3 /UG=Rn.20282 /UG_TITLE=ESTs, Highly similar to I48741 ryanodine receptor type 1 - mouse (M.musculus) AI072862 ryanodine receptor 3 Ryr3 170546 XM_001080527 /// XM_342491 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // traceable author statement /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006941 // striated muscle contraction // inferred from electronic annotation /// 0006941 // striated muscle contraction // not recorded /// 0031000 // response to caffeine // traceable author statement /// 0051480 // cytosolic calcium ion homeostasis // traceable author statement /// 0055085 // transmembrane transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030314 // junctional membrane complex // inferred from electronic annotation /// 0030314 // junctional membrane complex // not recorded /// 0033017 // sarcoplasmic reticulum membrane // inferred from electronic annotation /// 0033017 // sarcoplasmic reticulum membrane // not recorded 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005219 // ryanodine-sensitive calcium-release channel activity // inferred from electronic annotation /// 0005219 // ryanodine-sensitive calcium-release channel activity // traceable author statement /// 0005262 // calcium channel activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1398480_at AW531492 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531492 /DB_XREF=gi:7173906 /DB_XREF=UI-R-BO1-aji-f-04-0-UI.s1 /CLONE=UI-R-BO1-aji-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.47727.1 /TIER=ConsEnd /STK=3 /UG=Rn.47727 /UG_TITLE=ESTs AW531492 leucine rich repeat containing 24 Lrrc24 362945 NM_001135896 1398481_at BF402699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402699 /DB_XREF=gi:11390674 /DB_XREF=UI-R-CA0-bho-e-09-0-UI.s1 /CLONE=UI-R-CA0-bho-e-09-0-UI /FEA=EST /CNT=4 /TID=Rn.60107.1 /TIER=ConsEnd /STK=3 /UG=Rn.60107 /UG_TITLE=ESTs BF402699 1398482_at AI411774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411774 /DB_XREF=gi:4255278 /DB_XREF=EST240068 /CLONE=RPLDJ65 /FEA=EST /CNT=4 /TID=Rn.64776.1 /TIER=ConsEnd /STK=3 /UG=Rn.64776 /UG_TITLE=ESTs, Weakly similar to BCL3_HUMAN B-CELL LYMPHOMA 3-ENCODED PROTEIN (H.sapiens) AI411774 B-cell CLL/lymphoma 3 Bcl3 680611 NM_001109422 0000060 // protein import into nucleus, translocation // not recorded /// 0002268 // follicular dendritic cell differentiation // not recorded /// 0002315 // marginal zone B cell differentiation // not recorded /// 0002455 // humoral immune response mediated by circulating immunoglobulin // not recorded /// 0002467 // germinal center formation // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0007249 // I-kappaB kinase/NF-kappaB cascade // not recorded /// 0009615 // response to virus // not recorded /// 0010225 // response to UV-C // not recorded /// 0016481 // negative regulation of transcription // not recorded /// 0019730 // antimicrobial humoral response // not recorded /// 0030198 // extracellular matrix organization // not recorded /// 0030330 // DNA damage response, signal transduction by p53 class mediator // not recorded /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0042088 // T-helper 1 type immune response // not recorded /// 0042345 // regulation of NF-kappaB import into nucleus // not recorded /// 0042536 // negative regulation of tumor necrosis factor biosynthetic process // not recorded /// 0042742 // defense response to bacterium // not recorded /// 0042771 // DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis // not recorded /// 0042832 // defense response to protozoan // not recorded /// 0042981 // regulation of apoptosis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0045064 // T-helper 2 cell differentiation // not recorded /// 0045082 // positive regulation of interleukin-10 biosynthetic process // not recorded /// 0045415 // negative regulation of interleukin-8 biosynthetic process // not recorded /// 0045727 // positive regulation of translation // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048536 // spleen development // not recorded /// 0051101 // regulation of DNA binding // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0032996 // Bcl3-Bcl10 complex // not recorded /// 0033257 // Bcl3/NF-kappaB2 complex // not recorded /// 0043234 // protein complex // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0030528 // transcription regulator activity // not recorded 1398483_at AI229118 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229118 /DB_XREF=gi:3813005 /DB_XREF=EST225813 /CLONE=RBRDE24 /FEA=EST /CNT=4 /TID=Rn.24403.1 /TIER=ConsEnd /STK=3 /UG=Rn.24403 /UG_TITLE=ESTs AI229118 regulator of G-protein signaling 17 Rgs17 308118 NM_001107459 0004871 // signal transducer activity // inferred from electronic annotation 1398484_at AI070306 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070306 /DB_XREF=gi:3396557 /DB_XREF=UI-R-Y0-lt-e-06-0-UI.s1 /CLONE=UI-R-Y0-lt-e-06-0-UI /FEA=EST /CNT=4 /TID=Rn.19710.1 /TIER=ConsEnd /STK=3 /UG=Rn.19710 /UG_TITLE=ESTs AI070306 similar to TBC1 domain family, member 8 (with GRAM domain); vascular Rab-GAP/TBC-containing RGD1308221 304645 NM_001134539 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1398485_at AW434615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434615 /DB_XREF=gi:6965922 /DB_XREF=UI-R-BJ0p-afi-b-11-0-UI.s1 /CLONE=UI-R-BJ0p-afi-b-11-0-UI /FEA=EST /CNT=4 /TID=Rn.23523.1 /TIER=ConsEnd /STK=3 /UG=Rn.23523 /UG_TITLE=ESTs AW434615 similar to RIKEN cDNA 6330406I15 RGD1307396 360757 XM_001059692 /// XM_341029 1398486_at BF400868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400868 /DB_XREF=gi:11388843 /DB_XREF=UI-R-CA0-bhg-g-08-0-UI.s1 /CLONE=UI-R-CA0-bhg-g-08-0-UI /FEA=EST /CNT=4 /TID=Rn.60178.1 /TIER=ConsEnd /STK=3 /UG=Rn.60178 /UG_TITLE=ESTs BF400868 similar to melanoma inhibitory activity 3 LOC683007 683007 XM_001064186 1398487_at BF419639 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF419639 /DB_XREF=gi:11407628 /DB_XREF=UI-R-CA0-bpe-e-06-0-UI.s1 /CLONE=UI-R-CA0-bpe-e-06-0-UI /FEA=EST /CNT=4 /TID=Rn.62666.1 /TIER=ConsEnd /STK=3 /UG=Rn.62666 /UG_TITLE=ESTs, Highly similar to PRE-B-CELL LEUKEMIA TRANSCRIPTION FACTOR-1 (M.musculus) BF419639 pre-B-cell leukemia homeobox 1 Pbx1 304947 NM_001100681 /// NM_001134862 0001655 // urogenital system development // not recorded /// 0001658 // branching involved in ureteric bud morphogenesis // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0009887 // organ morphogenesis // not recorded /// 0009952 // anterior/posterior pattern formation // not recorded /// 0009954 // proximal/distal pattern formation // not recorded /// 0030278 // regulation of ossification // not recorded /// 0030325 // adrenal gland development // not recorded /// 0030326 // embryonic limb morphogenesis // not recorded /// 0035162 // embryonic hemopoiesis // not recorded /// 0042127 // regulation of cell proliferation // not recorded /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048536 // spleen development // not recorded /// 0048538 // thymus development // not recorded /// 0048568 // embryonic organ development // not recorded /// 0048706 // embryonic skeletal system development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0046982 // protein heterodimerization activity // not recorded 1398488_at AW254531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW254531 /DB_XREF=gi:6598122 /DB_XREF=UI-R-BJ0-aej-d-01-0-UI.s1 /CLONE=UI-R-BJ0-aej-d-01-0-UI /FEA=EST /CNT=5 /TID=Rn.44665.1 /TIER=ConsEnd /STK=3 /UG=Rn.44665 /UG_TITLE=ESTs AW254531 Nuclear receptor coactivator 5 Ncoa5 296372 NM_001106543 0006412 // translation // inferred from electronic annotation 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1398489_at BF400830 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400830 /DB_XREF=gi:11388770 /DB_XREF=UI-R-CA0-bhf-g-01-0-UI.s1 /CLONE=UI-R-CA0-bhf-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.57338.1 /TIER=ConsEnd /STK=3 /UG=Rn.57338 /UG_TITLE=ESTs BF400830 1398490_at BM390414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390414 /DB_XREF=gi:18190467 /DB_XREF=UI-R-CN1-cjq-n-07-0-UI.s1 /CLONE=UI-R-CN1-cjq-n-07-0-UI /FEA=EST /CNT=3 /TID=Rn.58721.1 /TIER=ConsEnd /STK=3 /UG=Rn.58721 /UG_TITLE=ESTs BM390414 1398491_at BM383434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383434 /DB_XREF=gi:18183487 /DB_XREF=UI-R-DM1-ckb-j-08-0-UI.s1 /CLONE=UI-R-DM1-ckb-j-08-0-UI /FEA=EST /CNT=3 /TID=Rn.54040.1 /TIER=ConsEnd /STK=3 /UG=Rn.54040 /UG_TITLE=ESTs BM383434 immunoglobulin-like domain containing receptor 1 Ildr1 303914 NM_001127536 1398492_at BF395819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF395819 /DB_XREF=gi:11380790 /DB_XREF=UI-R-BT1-bkc-f-06-0-UI.s1 /CLONE=UI-R-BT1-bkc-f-06-0-UI /FEA=EST /CNT=3 /TID=Rn.62726.1 /TIER=ConsEnd /STK=3 /UG=Rn.62726 /UG_TITLE=ESTs BF395819 1398493_at BG377873 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377873 /DB_XREF=gi:13302345 /DB_XREF=UI-R-CU0-bvg-c-02-0-UI.s1 /CLONE=UI-R-CU0-bvg-c-02-0-UI /FEA=EST /CNT=3 /TID=Rn.41123.1 /TIER=ConsEnd /STK=3 /UG=Rn.41123 /UG_TITLE=ESTs BG377873 1398494_at BF404279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404279 /DB_XREF=gi:11392254 /DB_XREF=UI-R-CA1-bjd-e-07-0-UI.s1 /CLONE=UI-R-CA1-bjd-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.57877.1 /TIER=ConsEnd /STK=3 /UG=Rn.57877 /UG_TITLE=ESTs BF404279 REV1 homolog (S. cerevisiae) Rev1 316344 NM_001108213 0006281 // DNA repair // inferred from electronic annotation /// 0009411 // response to UV // not recorded /// 0042276 // error-prone translesion synthesis // not recorded 0005622 // intracellular // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0017125 // deoxycytidyl transferase activity // not recorded 1398495_at BE121436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE121436 /DB_XREF=gi:8513541 /DB_XREF=UI-R-CA0-bax-g-12-0-UI.s1 /CLONE=UI-R-CA0-bax-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.46241.1 /TIER=ConsEnd /STK=3 /UG=Rn.46241 /UG_TITLE=ESTs BE121436 1398496_at BF390696 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF390696 /DB_XREF=gi:11375543 /DB_XREF=UI-R-CA1-bco-c-09-0-UI.s1 /CLONE=UI-R-CA1-bco-c-09-0-UI /FEA=EST /CNT=3 /TID=Rn.15593.1 /TIER=ConsEnd /STK=3 /UG=Rn.15593 /UG_TITLE=ESTs BF390696 1398497_at BF391243 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391243 /DB_XREF=gi:11376086 /DB_XREF=UI-R-CA1-bcv-a-06-0-UI.s1 /CLONE=UI-R-CA1-bcv-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.61770.1 /TIER=ConsEnd /STK=3 /UG=Rn.61770 /UG_TITLE=ESTs BF391243 1398498_at BE119823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119823 /DB_XREF=gi:8511928 /DB_XREF=UI-R-CA0-ban-d-09-0-UI.s1 /CLONE=UI-R-CA0-ban-d-09-0-UI /FEA=EST /CNT=3 /TID=Rn.19141.1 /TIER=ConsEnd /STK=3 /UG=Rn.19141 /UG_TITLE=ESTs BE119823 1398499_at BE102928 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102928 /DB_XREF=gi:8495027 /DB_XREF=UI-R-BT1-aqu-b-06-0-UI.s1 /CLONE=UI-R-BT1-aqu-b-06-0-UI /FEA=EST /CNT=3 /TID=Rn.64378.1 /TIER=ConsEnd /STK=3 /UG=Rn.64378 /UG_TITLE=ESTs BE102928 spectrin repeat containing, nuclear envelope 1 Syne1 499010 NM_001029909 0007030 // Golgi organization // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0009416 // response to light stimulus // inferred from expression pattern /// 0040023 // establishment of nucleus localization // not recorded /// 0042692 // muscle cell differentiation // not recorded /// 0048260 // positive regulation of receptor-mediated endocytosis // inferred from mutant phenotype /// 0048814 // regulation of dendrite morphogenesis // inferred from mutant phenotype /// 0090286 // cytoskeletal anchoring at nuclear membrane // not recorded /// 0090292 // nuclear matrix anchoring at nuclear membrane // not recorded 0005635 // nuclear envelope // inferred from direct assay /// 0005635 // nuclear envelope // not recorded /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // not recorded /// 0005819 // spindle // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0030017 // sarcomere // not recorded /// 0030496 // midbody // inferred from direct assay /// 0034993 // SUN-KASH complex // not recorded /// 0043197 // dendritic spine // inferred from direct assay /// 0045211 // postsynaptic membrane // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // not recorded /// 0005198 // structural molecule activity // traceable author statement /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005521 // lamin binding // not recorded 1398500_at BI295477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295477 /DB_XREF=gi:14958964 /DB_XREF=UI-R-DK0-ces-h-04-0-UI.s1 /CLONE=UI-R-DK0-ces-h-04-0-UI /FEA=EST /CNT=3 /TID=Rn.62599.1 /TIER=ConsEnd /STK=3 /UG=Rn.62599 /UG_TITLE=ESTs BI295477 1398501_at BE102282 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102282 /DB_XREF=gi:8494381 /DB_XREF=UI-R-BT1-aqk-f-09-0-UI.s1 /CLONE=UI-R-BT1-aqk-f-09-0-UI /FEA=EST /CNT=3 /TID=Rn.16587.1 /TIER=ConsEnd /STK=3 /UG=Rn.16587 /UG_TITLE=ESTs BE102282 leucine rich repeat containing 61 Lrrc61 500111 NM_001109231 0005515 // protein binding // inferred from electronic annotation 1398502_at AI556780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556780 /DB_XREF=gi:4489143 /DB_XREF=UI-R-C2p-rm-a-09-0-UI.s1 /CLONE=UI-R-C2p-rm-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.37695.1 /TIER=ConsEnd /STK=3 /UG=Rn.37695 /UG_TITLE=ESTs AI556780 1398503_at AI575653 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI575653 /DB_XREF=gi:4560029 /DB_XREF=UI-R-Y0-vi-f-05-0-UI.s1 /CLONE=UI-R-Y0-vi-f-05-0-UI /FEA=EST /CNT=3 /TID=Rn.38880.1 /TIER=ConsEnd /STK=3 /UG=Rn.38880 /UG_TITLE=ESTs AI575653 retina and anterior neural fold homeobox Rax 114213 NM_053678 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007389 // pattern specification process // inferred from electronic annotation /// 0007389 // pattern specification process // not recorded /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0021854 // hypothalamus development // inferred from electronic annotation /// 0021854 // hypothalamus development // not recorded /// 0043010 // camera-type eye development // inferred from electronic annotation /// 0043010 // camera-type eye development // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0060173 // limb development // inferred from electronic annotation /// 0060173 // limb development // not recorded 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1398504_at BF391867 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391867 /DB_XREF=gi:11376722 /DB_XREF=UI-R-CA1-bcy-e-05-0-UI.s1 /CLONE=UI-R-CA1-bcy-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.63394.1 /TIER=ConsEnd /STK=3 /UG=Rn.63394 /UG_TITLE=ESTs BF391867 1398505_at BE112418 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112418 /DB_XREF=gi:8504523 /DB_XREF=UI-R-BJ1-avm-d-10-0-UI.s1 /CLONE=UI-R-BJ1-avm-d-10-0-UI /FEA=EST /CNT=3 /TID=Rn.45064.1 /TIER=ConsEnd /STK=3 /UG=Rn.45064 /UG_TITLE=ESTs BE112418 Ras interacting protein 1 Rasip1 292912 NM_001106261 0007165 // signal transduction // inferred from electronic annotation 1398506_at AI146158 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146158 /DB_XREF=gi:3667957 /DB_XREF=UI-R-BT0-qb-c-06-0-UI.s1 /CLONE=UI-R-BT0-qb-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.41234.1 /TIER=ConsEnd /STK=3 /UG=Rn.41234 /UG_TITLE=ESTs AI146158 Protein phosphatase 3 (formerly 2B), catalytic subunit, alpha isoform Ppp3ca 24674 NM_017041 0000082 // G1/S transition of mitotic cell cycle // inferred from electronic annotation /// 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0001975 // response to amphetamine // inferred from expression pattern /// 0006470 // protein dephosphorylation // inferred from direct assay /// 0006606 // protein import into nucleus // inferred from electronic annotation /// 0006606 // protein import into nucleus // not recorded /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // not recorded /// 0006950 // response to stress // inferred from electronic annotation /// 0006950 // response to stress // not recorded /// 0016311 // dephosphorylation // not recorded /// 0016311 // dephosphorylation // inferred from electronic annotation /// 0045955 // negative regulation of calcium ion-dependent exocytosis // inferred by curator /// 0046676 // negative regulation of insulin secretion // inferred from mutant phenotype /// 0048741 // skeletal muscle fiber development // inferred from electronic annotation /// 0048741 // skeletal muscle fiber development // not recorded /// 0050804 // regulation of synaptic transmission // inferred from electronic annotation /// 0050804 // regulation of synaptic transmission // not recorded /// 0060079 // regulation of excitatory postsynaptic membrane potential // inferred from electronic annotation /// 0060079 // regulation of excitatory postsynaptic membrane potential // not recorded /// 0071333 // cellular response to glucose stimulus // inferred from mutant phenotype 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005955 // calcineurin complex // inferred from direct assay /// 0005955 // calcineurin complex // not recorded /// 0005955 // calcineurin complex // inferred from electronic annotation /// 0016020 // membrane // inferred from direct assay /// 0030018 // Z disc // inferred from electronic annotation /// 0030018 // Z disc // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // not recorded /// 0004722 // protein serine/threonine phosphatase activity // inferred from direct assay /// 0004723 // calcium-dependent protein serine/threonine phosphatase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from direct assay /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from direct assay 1398507_at BE108415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108415 /DB_XREF=gi:8500520 /DB_XREF=UI-R-CA0-axc-a-04-0-UI.s1 /CLONE=UI-R-CA0-axc-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.51469.1 /TIER=ConsEnd /STK=3 /UG=Rn.51469 /UG_TITLE=ESTs BE108415 1398508_at BF546374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546374 /DB_XREF=gi:11637481 /DB_XREF=UI-R-C1-kx-e-08-0-UI.r1 /CLONE=UI-R-C1-kx-e-08-0-UI /FEA=EST /CNT=11 /TID=Rn.7903.1 /TIER=ConsEnd /STK=2 /UG=Rn.7903 /UG_TITLE=ESTs, Weakly similar to T12543 hypothetical protein DKFZp434M154.1 (H.sapiens) BF546374 polyglutamine-containing protein Pqcp 314329 NM_001012470 0005634 // nucleus // inferred from electronic annotation 1398509_at AI170370 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170370 /DB_XREF=gi:4134495 /DB_XREF=EST216296 /CLONE=RLUCH46 /FEA=EST /CNT=7 /TID=Rn.28402.1 /TIER=ConsEnd /STK=2 /UG=Rn.28402 /UG_TITLE=ESTs AI170370 zinc finger protein 709-like 1 Zfp709l1 690419 NM_001163063 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1398510_at BI295013 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295013 /DB_XREF=gi:14958032 /DB_XREF=UI-R-DK0-cee-g-05-0-UI.s1 /CLONE=UI-R-DK0-cee-g-05-0-UI /FEA=EST /CNT=7 /TID=Rn.43245.1 /TIER=ConsEnd /STK=2 /UG=Rn.43245 /UG_TITLE=ESTs BI295013 1398511_at AA901176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901176 /DB_XREF=gi:4233677 /DB_XREF=UI-R-E0-dc-g-02-0-UI.s1 /CLONE=UI-R-E0-dc-g-02-0-UI /FEA=EST /CNT=8 /TID=Rn.16299.1 /TIER=ConsEnd /STK=2 /UG=Rn.16299 /UG_TITLE=ESTs, Weakly similar to Heterodimeric complex composed of a mucin subunit, ASGP-1, which is predominantly O-glycosylated, and a cysteine-rich transmembrane subunit, ASGP-2, which is predominantly N-glycosylated (R.norvegicus) AA901176 sushi domain containing 2 Susd2 294335 NM_001106381 0006955 // immune response // inferred from electronic annotation 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030247 // polysaccharide binding // inferred from electronic annotation 1398512_at BM389434 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389434 /DB_XREF=gi:18189487 /DB_XREF=UI-R-CN1-cjn-b-07-0-UI.s1 /CLONE=UI-R-CN1-cjn-b-07-0-UI /FEA=EST /CNT=5 /TID=Rn.17992.1 /TIER=ConsEnd /STK=2 /UG=Rn.17992 /UG_TITLE=ESTs BM389434 nuclear transcription factor, X-box binding 1 Nfx1 313166 NM_001024784 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045347 // negative regulation of MHC class II biosynthetic process // not recorded 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398513_at AI556479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556479 /DB_XREF=gi:4488842 /DB_XREF=UI-R-C2p-rk-c-08-0-UI.s1 /CLONE=UI-R-C2p-rk-c-08-0-UI /FEA=EST /CNT=5 /TID=Rn.25315.1 /TIER=ConsEnd /STK=2 /UG=Rn.25315 /UG_TITLE=ESTs AI556479 1398514_at AI232328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232328 /DB_XREF=gi:4135746 /DB_XREF=EST229016 /CLONE=RKICA29 /FEA=EST /CNT=5 /TID=Rn.24631.1 /TIER=ConsEnd /STK=2 /UG=Rn.24631 /UG_TITLE=ESTs, Highly similar to HGD MOUSE HOMOGENTISATE 1,2-DIOXYGENASE (M.musculus) AI232328 homogentisate 1, 2-dioxygenase Hgd 360719 NM_001012145 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006520 // cellular amino acid metabolic process // not recorded /// 0006559 // L-phenylalanine catabolic process // inferred from electronic annotation /// 0006570 // tyrosine metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0004411 // homogentisate 1,2-dioxygenase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation 1398515_at BF291177 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291177 /DB_XREF=gi:11222247 /DB_XREF=EST455768 /CLONE=RGIIJ70 /FEA=EST /CNT=5 /TID=Rn.43829.1 /TIER=ConsEnd /STK=2 /UG=Rn.43829 /UG_TITLE=ESTs BF291177 1398516_at BF283013 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283013 /DB_XREF=gi:11214083 /DB_XREF=EST447604 /CLONE=RGIDW29 /FEA=EST /CNT=4 /TID=Rn.13207.1 /TIER=ConsEnd /STK=2 /UG=Rn.13207 /UG_TITLE=ESTs, Weakly similar to T46908 hypothetical protein DKFZp761G2423.1 (H.sapiens) BF283013 golgi transport 1 homolog A (S. cerevisiae) Golt1a 498230 NM_001109070 0016192 // vesicle-mediated transport // inferred from electronic annotation 1398517_at BI295779 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI295779 /DB_XREF=gi:14959558 /DB_XREF=UI-R-DK0-cfa-e-03-0-UI.s1 /CLONE=UI-R-DK0-cfa-e-03-0-UI /FEA=EST /CNT=4 /TID=Rn.22799.1 /TIER=ConsEnd /STK=2 /UG=Rn.22799 /UG_TITLE=ESTs BI295779 1398518_at AW534099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534099 /DB_XREF=gi:7176513 /DB_XREF=UI-R-C4-alp-b-06-0-UI.s1 /CLONE=UI-R-C4-alp-b-06-0-UI /FEA=EST /CNT=4 /TID=Rn.47498.1 /TIER=ConsEnd /STK=2 /UG=Rn.47498 /UG_TITLE=ESTs AW534099 1398519_at AI549576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549576 /DB_XREF=gi:4467064 /DB_XREF=UI-R-C3-tt-e-12-0-UI.s1 /CLONE=UI-R-C3-tt-e-12-0-UI /FEA=EST /CNT=4 /TID=Rn.41974.1 /TIER=ConsEnd /STK=2 /UG=Rn.41974 /UG_TITLE=ESTs AI549576 1398520_at AW521621 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW521621 /DB_XREF=gi:7164006 /DB_XREF=UI-R-BO0-ago-h-02-0-UI.s1 /CLONE=UI-R-BO0-ago-h-02-0-UI /FEA=EST /CNT=4 /TID=Rn.21179.1 /TIER=ConsEnd /STK=2 /UG=Rn.21179 /UG_TITLE=ESTs AW521621 similar to pleckstrin homology domain protein (5V327) RGD1566112 500685 NM_001127566 1398521_at AI101583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101583 /DB_XREF=gi:3706463 /DB_XREF=EST210872 /CLONE=RBRBS54 /FEA=EST /CNT=4 /TID=Rn.22483.1 /TIER=ConsEnd /STK=2 /UG=Rn.22483 /UG_TITLE=ESTs AI101583 1398522_at BM386512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386512 /DB_XREF=gi:18186565 /DB_XREF=UI-R-CN1-cjg-o-01-0-UI.s1 /CLONE=UI-R-CN1-cjg-o-01-0-UI /FEA=EST /CNT=4 /TID=Rn.74573.1 /TIER=ConsEnd /STK=2 /UG=Rn.74573 /UG_TITLE=ESTs BM386512 Ankyrin repeat and LEM domain containing 2 Ankle2 360829 NM_001047901 0005635 // nuclear envelope // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1398523_a_at AA900618 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900618 /DB_XREF=gi:4233111 /DB_XREF=UI-R-E0-by-b-12-0-UI.s4 /CLONE=UI-R-E0-by-b-12-0-UI /FEA=EST /CNT=4 /TID=Rn.8232.2 /TIER=ConsEnd /STK=2 /UG=Rn.8232 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) AA900618 interferon (alpha, beta and omega) receptor 1 Ifnar1 288264 NM_001105893 0007596 // blood coagulation // inferred from electronic annotation /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0032729 // positive regulation of interferon-gamma production // not recorded /// 0042110 // T cell activation // not recorded /// 0045351 // type I interferon biosynthetic process // not recorded 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004904 // interferon receptor activity // not recorded /// 0005515 // protein binding // not recorded 1398524_at BF402416 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF402416 /DB_XREF=gi:11390391 /DB_XREF=UI-R-CA0-bhp-a-02-0-UI.s1 /CLONE=UI-R-CA0-bhp-a-02-0-UI /FEA=EST /CNT=3 /TID=Rn.64179.1 /TIER=ConsEnd /STK=2 /UG=Rn.64179 /UG_TITLE=ESTs BF402416 1398525_at AW526095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526095 /DB_XREF=gi:7168480 /DB_XREF=UI-R-BO1-aiz-b-09-0-UI.s1 /CLONE=UI-R-BO1-aiz-b-09-0-UI /FEA=EST /CNT=3 /TID=Rn.64130.1 /TIER=ConsEnd /STK=2 /UG=Rn.64130 /UG_TITLE=ESTs AW526095 1398526_at BE102813 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102813 /DB_XREF=gi:8494912 /DB_XREF=UI-R-BT1-aqt-e-10-0-UI.s1 /CLONE=UI-R-BT1-aqt-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.49077.1 /TIER=ConsEnd /STK=2 /UG=Rn.49077 /UG_TITLE=ESTs BE102813 1398527_at BE108292 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108292 /DB_XREF=gi:8500397 /DB_XREF=UI-R-BS1-ayx-f-01-0-UI.s1 /CLONE=UI-R-BS1-ayx-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.28690.1 /TIER=ConsEnd /STK=2 /UG=Rn.28690 /UG_TITLE=ESTs BE108292 AP2 associated kinase 1 Aak1 500244 NM_001173450 /// XM_001070331 /// XM_575594 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0071439 // clathrin complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1398528_at BE117514 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117514 /DB_XREF=gi:8509619 /DB_XREF=UI-R-BS1-ayo-f-11-0-UI.s1 /CLONE=UI-R-BS1-ayo-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.46795.1 /TIER=ConsEnd /STK=2 /UG=Rn.46795 /UG_TITLE=ESTs BE117514 1398529_at AI556622 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI556622 /DB_XREF=gi:4488985 /DB_XREF=UI-R-C2p-ri-e-05-0-UI.s1 /CLONE=UI-R-C2p-ri-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.39183.1 /TIER=ConsEnd /STK=2 /UG=Rn.39183 /UG_TITLE=ESTs, Weakly similar to JE0343 terf protein - rat (R.norvegicus) AI556622 butyrophilin-like 5 Btnl5 686048 NM_001166351 0050776 // regulation of immune response // traceable author statement 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1398530_at BE100840 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE100840 /DB_XREF=gi:8492740 /DB_XREF=UI-R-BJ1-auf-h-08-0-UI.s1 /CLONE=UI-R-BJ1-auf-h-08-0-UI /FEA=EST /CNT=3 /TID=Rn.27281.1 /TIER=ConsEnd /STK=2 /UG=Rn.27281 /UG_TITLE=ESTs BE100840 guanine nucleotide binding protein (G protein), gamma 11 Gng11 64199 NM_022396 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation 1398531_at AI058947 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058947 /DB_XREF=gi:3332724 /DB_XREF=UI-R-C1-lr-c-11-0-UI.s1 /CLONE=UI-R-C1-lr-c-11-0-UI /FEA=EST /CNT=3 /TID=Rn.15770.1 /TIER=ConsEnd /STK=2 /UG=Rn.15770 /UG_TITLE=ESTs AI058947 1398532_at BF524297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF524297 /DB_XREF=gi:11632264 /DB_XREF=UI-R-AG0-xc-e-06-0-UI.r1 /CLONE=UI-R-AG0-xc-e-06-0-UI /FEA=EST /CNT=3 /TID=Rn.40509.1 /TIER=ConsEnd /STK=2 /UG=Rn.40509 /UG_TITLE=ESTs BF524297 1398533_at BE105837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105837 /DB_XREF=gi:8497939 /DB_XREF=UI-R-BX0-ary-g-04-0-UI.s1 /CLONE=UI-R-BX0-ary-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.44008.1 /TIER=ConsEnd /STK=2 /UG=Rn.44008 /UG_TITLE=ESTs, Weakly similar to T14349 Shyc protein - mouse (M.musculus) BE105837 cytoplasmic FMR1 interacting protein 2 Cyfip2 303073 NM_001106996 1398534_at BF396426 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396426 /DB_XREF=gi:11381398 /DB_XREF=UI-R-BS2-bdy-a-06-0-UI.s1 /CLONE=UI-R-BS2-bdy-a-06-0-UI /FEA=EST /CNT=3 /TID=Rn.44199.1 /TIER=ConsEnd /STK=2 /UG=Rn.44199 /UG_TITLE=ESTs BF396426 1398535_at AA998579 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA998579 /DB_XREF=gi:4290825 /DB_XREF=UI-R-C0-if-e-10-0-UI.s1 /CLONE=UI-R-C0-if-e-10-0-UI /FEA=EST /CNT=3 /TID=Rn.13122.1 /TIER=ConsEnd /STK=2 /UG=Rn.13122 /UG_TITLE=ESTs AA998579 Hbs1-like (S. cerevisiae) Hbs1l 293408 NM_001011934 0006412 // translation // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1398536_at BI275768 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275768 /DB_XREF=gi:14920005 /DB_XREF=UI-R-CX0-bxg-d-08-0-UI.s1 /CLONE=UI-R-CX0-bxg-d-08-0-UI /FEA=EST /CNT=3 /TID=Rn.56017.1 /TIER=ConsEnd /STK=2 /UG=Rn.56017 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) BI275768 zinc finger protein 655 Znf655 360764 NM_001008362 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007346 // regulation of mitotic cell cycle // not recorded /// 0007346 // regulation of mitotic cell cycle // inferred from sequence or structural similarity /// 0051318 // G1 phase // not recorded /// 0051318 // G1 phase // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1398537_at BE116658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116658 /DB_XREF=gi:8508763 /DB_XREF=UI-R-BS1-ayd-g-07-0-UI.s1 /CLONE=UI-R-BS1-ayd-g-07-0-UI /FEA=EST /CNT=3 /TID=Rn.66693.1 /TIER=ConsEnd /STK=2 /UG=Rn.66693 /UG_TITLE=ESTs, Weakly similar to AMFR_HUMAN AUTOCRINE MOTILITY FACTOR RECEPTOR PRECURSOR (H.sapiens) BE116658 autocrine motility factor receptor Amfr 361367 XM_001062954 /// XM_341644 0000209 // protein polyubiquitination // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0007611 // learning or memory // inferred from expression pattern /// 0030433 // ER-associated protein catabolic process // not recorded /// 0030968 // endoplasmic reticulum unfolded protein response // not recorded /// 0051259 // protein oligomerization // not recorded 0000299 // integral to membrane of membrane fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0030176 // integral to endoplasmic reticulum membrane // not recorded /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004872 // receptor activity // not recorded /// 0004888 // transmembrane receptor activity // inferred by curator /// 0005515 // protein binding // inferred by curator /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398538_at AI137533 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137533 /DB_XREF=gi:3638310 /DB_XREF=UI-R-C2p-oc-f-01-0-UI.s1 /CLONE=UI-R-C2p-oc-f-01-0-UI /FEA=EST /CNT=3 /TID=Rn.23775.1 /TIER=ConsEnd /STK=2 /UG=Rn.23775 /UG_TITLE=ESTs AI137533 abhydrolase domain containing 8 Abhd8 306338 NM_001107301 0003824 // catalytic activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1398539_at BF404302 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404302 /DB_XREF=gi:11392277 /DB_XREF=UI-R-CA1-bjd-i-09-0-UI.s1 /CLONE=UI-R-CA1-bjd-i-09-0-UI /FEA=EST /CNT=3 /TID=Rn.35055.1 /TIER=ConsEnd /STK=2 /UG=Rn.35055 /UG_TITLE=ESTs BF404302 1398540_at BM386789 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386789 /DB_XREF=gi:18186842 /DB_XREF=UI-R-CN1-cjh-a-24-0-UI.s1 /CLONE=UI-R-CN1-cjh-a-24-0-UI /FEA=EST /CNT=2 /TID=Rn.14787.1 /TIER=ConsEnd /STK=2 /UG=Rn.14787 /UG_TITLE=ESTs BM386789 regulator of G-protein signaling 1 Rgs1 54289 NM_019336 0009968 // negative regulation of signal transduction // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation 1398541_at AI407080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407080 /DB_XREF=gi:4250584 /DB_XREF=EST235368 /CLONE=ROVDR96 /FEA=EST /CNT=2 /TID=Rn.43592.1 /TIER=ConsEnd /STK=2 /UG=Rn.43592 /UG_TITLE=ESTs AI407080 1398542_at BG381000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381000 /DB_XREF=gi:13305472 /DB_XREF=UI-R-CT0-bug-a-01-0-UI.s1 /CLONE=UI-R-CT0-bug-a-01-0-UI /FEA=EST /CNT=2 /TID=Rn.66789.1 /TIER=ConsEnd /STK=2 /UG=Rn.66789 /UG_TITLE=ESTs BG381000 ankyrin repeat domain 34A Ankrd34a 295283 NM_001024980 1398543_at BF411798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF411798 /DB_XREF=gi:11399787 /DB_XREF=UI-R-BT1-bmw-c-12-0-UI.s1 /CLONE=UI-R-BT1-bmw-c-12-0-UI /FEA=EST /CNT=2 /TID=Rn.61925.1 /TIER=ConsEnd /STK=2 /UG=Rn.61925 /UG_TITLE=ESTs BF411798 1398544_at BF398673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398673 /DB_XREF=gi:11383670 /DB_XREF=UI-R-BS2-ber-e-09-0-UI.s1 /CLONE=UI-R-BS2-ber-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.79288.1 /TIER=ConsEnd /STK=2 /UG=Rn.79288 /UG_TITLE=ESTs BF398673 1398545_at BI288876 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288876 /DB_XREF=gi:14945882 /DB_XREF=UI-R-DK0-cdf-h-10-0-UI.s1 /CLONE=UI-R-DK0-cdf-h-10-0-UI /FEA=EST /CNT=2 /TID=Rn.45617.1 /TIER=ConsEnd /STK=2 /UG=Rn.45617 /UG_TITLE=ESTs BI288876 1398546_at BF396217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396217 /DB_XREF=gi:11381154 /DB_XREF=UI-R-BS2-bdv-c-05-0-UI.s1 /CLONE=UI-R-BS2-bdv-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.52058.1 /TIER=ConsEnd /STK=2 /UG=Rn.52058 /UG_TITLE=ESTs BF396217 1398547_at BE107624 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107624 /DB_XREF=gi:8499729 /DB_XREF=UI-R-CA0-awv-g-12-0-UI.s1 /CLONE=UI-R-CA0-awv-g-12-0-UI /FEA=EST /CNT=2 /TID=Rn.40660.1 /TIER=ConsEnd /STK=2 /UG=Rn.40660 /UG_TITLE=ESTs BE107624 1398548_at BF389746 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389746 /DB_XREF=gi:11374582 /DB_XREF=UI-R-BS2-bdo-c-08-0-UI.s1 /CLONE=UI-R-BS2-bdo-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.20936.1 /TIER=ConsEnd /STK=2 /UG=Rn.20936 /UG_TITLE=ESTs BF389746 1398549_at AI412463 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412463 /DB_XREF=gi:4255967 /DB_XREF=EST240762 /CLONE=RBRDP02 /FEA=EST /CNT=2 /TID=Rn.78759.1 /TIER=ConsEnd /STK=2 /UG=Rn.78759 /UG_TITLE=ESTs AI412463 1398550_at BF405070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405070 /DB_XREF=gi:11393045 /DB_XREF=UI-R-CA1-bip-c-05-0-UI.s1 /CLONE=UI-R-CA1-bip-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.27636.1 /TIER=ConsEnd /STK=2 /UG=Rn.27636 /UG_TITLE=ESTs BF405070 1398551_at AA997115 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997115 /DB_XREF=gi:4281609 /DB_XREF=UI-R-C0-hr-d-12-0-UI.s1 /CLONE=UI-R-C0-hr-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.12620.1 /TIER=ConsEnd /STK=2 /UG=Rn.12620 /UG_TITLE=ESTs AA997115 tetratricopeptide repeat domain 25 Ttc25 303534 NM_001107049 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1398552_a_at BG381450 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381450 /DB_XREF=gi:13305922 /DB_XREF=UI-R-CT0-buj-e-01-0-UI.s1 /CLONE=UI-R-CT0-buj-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.48967.1 /TIER=ConsEnd /STK=2 /UG=Rn.48967 /UG_TITLE=ESTs BG381450 acrosin binding protein Acrbp 500316 NM_001025049 0001669 // acrosomal vesicle // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 1398553_at AI137113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137113 /DB_XREF=gi:3637890 /DB_XREF=UI-R-C2p-oe-d-10-0-UI.s1 /CLONE=UI-R-C2p-oe-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.27318.1 /TIER=ConsEnd /STK=2 /UG=Rn.27318 /UG_TITLE=ESTs, Weakly similar to P24 RAT COP-COATED VESICLE MEMBRANE PROTEIN P24 PRECURSOR (R.norvegicus) AI137113 transmembrane emp24 protein transport domain containing 5 Tmed5 289883 NM_001007619 0006810 // transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1398554_at BE097687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097687 /DB_XREF=gi:8488618 /DB_XREF=UI-R-BO1-aqa-e-11-0-UI.s1 /CLONE=UI-R-BO1-aqa-e-11-0-UI /FEA=EST /CNT=2 /TID=Rn.21628.1 /TIER=ConsEnd /STK=2 /UG=Rn.21628 /UG_TITLE=ESTs BE097687 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b Atp6v0b 298451 NM_001106681 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0033177 // proton-transporting two-sector ATPase complex, proton-transporting domain // inferred from electronic annotation /// 0033179 // proton-transporting V-type ATPase, V0 domain // inferred from electronic annotation 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation 1398555_at AI549027 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI549027 /DB_XREF=gi:4466515 /DB_XREF=UI-R-C3-tv-f-05-0-UI.s1 /CLONE=UI-R-C3-tv-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.39287.1 /TIER=ConsEnd /STK=2 /UG=Rn.39287 /UG_TITLE=ESTs AI549027 1398556_at BE119321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE119321 /DB_XREF=gi:8511426 /DB_XREF=UI-R-CA0-bah-b-02-0-UI.s1 /CLONE=UI-R-CA0-bah-b-02-0-UI /FEA=EST /CNT=2 /TID=Rn.53202.1 /TIER=ConsEnd /STK=2 /UG=Rn.53202 /UG_TITLE=ESTs BE119321 1398557_at BF389362 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389362 /DB_XREF=gi:11374192 /DB_XREF=UI-R-BS2-bdm-h-09-0-UI.s1 /CLONE=UI-R-BS2-bdm-h-09-0-UI /FEA=EST /CNT=2 /TID=Rn.47535.1 /TIER=ConsEnd /STK=2 /UG=Rn.47535 /UG_TITLE=ESTs BF389362 IKAROS family zinc finger 5 Ikzf5 309031 NM_001107555 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation 1398558_at AI175246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175246 /DB_XREF=gi:3725884 /DB_XREF=EST218781 /CLONE=RMUCE77 /FEA=EST /CNT=2 /TID=Rn.28870.1 /TIER=ConsEnd /STK=2 /UG=Rn.28870 /UG_TITLE=ESTs AI175246 1398559_at AA956454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956454 /DB_XREF=gi:4238928 /DB_XREF=UI-R-E1-fm-a-12-0-UI.s1 /CLONE=UI-R-E1-fm-a-12-0-UI /FEA=EST /CNT=2 /TID=Rn.41100.1 /TIER=ConsEnd /STK=2 /UG=Rn.41100 /UG_TITLE=ESTs AA956454 1398560_at AW530670 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530670 /DB_XREF=gi:7173084 /DB_XREF=UI-R-BT1-akq-a-05-0-UI.s1 /CLONE=UI-R-BT1-akq-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.47511.1 /TIER=ConsEnd /STK=2 /UG=Rn.47511 /UG_TITLE=ESTs AW530670 1398561_at BI302791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302791 /DB_XREF=gi:14979071 /DB_XREF=UI-R-DO0-ciy-o-01-0-UI.s1 /CLONE=UI-R-DO0-ciy-o-01-0-UI /FEA=EST /CNT=2 /TID=Rn.77410.1 /TIER=ConsEnd /STK=2 /UG=Rn.77410 /UG_TITLE=ESTs BI302791 interferon regulatory factor 2 Irf2 290749 NM_001047086 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398562_at BG378932 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378932 /DB_XREF=gi:13303404 /DB_XREF=UI-R-CV1-bvu-g-03-0-UI.s1 /CLONE=UI-R-CV1-bvu-g-03-0-UI /FEA=EST /CNT=2 /TID=Rn.64721.1 /TIER=ConsEnd /STK=2 /UG=Rn.64721 /UG_TITLE=ESTs BG378932 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4 Als2cr4 316412 NM_001108220 0005515 // protein binding // not recorded 1398563_at BE115879 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE115879 /DB_XREF=gi:8507949 /DB_XREF=UI-R-BS1-axv-e-03-0-UI.s1 /CLONE=UI-R-BS1-axv-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.75056.1 /TIER=ConsEnd /STK=2 /UG=Rn.75056 /UG_TITLE=ESTs BE115879 1398564_at BF413246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF413246 /DB_XREF=gi:11401235 /DB_XREF=UI-R-BT1-bny-e-10-0-UI.s1 /CLONE=UI-R-BT1-bny-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.19305.2 /TIER=ConsEnd /STK=2 /UG=Rn.19305 /UG_TITLE=ESTs BF413246 1398565_at AW534457 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW534457 /DB_XREF=gi:7176871 /DB_XREF=UI-R-C4-aln-g-08-0-UI.s1 /CLONE=UI-R-C4-aln-g-08-0-UI /FEA=EST /CNT=2 /TID=Rn.49218.1 /TIER=ConsEnd /STK=2 /UG=Rn.49218 /UG_TITLE=ESTs AW534457 1398566_at AW526014 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW526014 /DB_XREF=gi:7168399 /DB_XREF=UI-R-BO1-aiy-c-07-0-UI.s1 /CLONE=UI-R-BO1-aiy-c-07-0-UI /FEA=EST /CNT=2 /TID=Rn.67780.1 /TIER=ConsEnd /STK=2 /UG=Rn.67780 /UG_TITLE=ESTs AW526014 1398567_at BF544658 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF544658 /DB_XREF=gi:11635765 /DB_XREF=UI-R-BT0-qj-a-08-0-UI.r1 /CLONE=UI-R-BT0-qj-a-08-0-UI /FEA=EST /CNT=2 /TID=Rn.38175.1 /TIER=ConsEnd /STK=2 /UG=Rn.38175 /UG_TITLE=ESTs BF544658 regulatory factor X 8 Rfx8 501127 XM_001058869 /// XM_576547 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1398568_at AW531009 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW531009 /DB_XREF=gi:7173423 /DB_XREF=UI-R-BT1-akt-f-02-0-UI.s1 /CLONE=UI-R-BT1-akt-f-02-0-UI /FEA=EST /CNT=2 /TID=Rn.47602.1 /TIER=ConsEnd /STK=2 /UG=Rn.47602 /UG_TITLE=ESTs AW531009 1398569_at BF412229 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412229 /DB_XREF=gi:11400218 /DB_XREF=UI-R-BT1-bmz-f-09-0-UI.s1 /CLONE=UI-R-BT1-bmz-f-09-0-UI /FEA=EST /CNT=2 /TID=Rn.45094.1 /TIER=ConsEnd /STK=2 /UG=Rn.45094 /UG_TITLE=ESTs BF412229 leucine-rich repeats and death domain containing Lrdd 293625 NM_001106318 /// XM_001062274 /// XM_002725753 /// XM_002728843 /// XM_219485 0006915 // apoptosis // not recorded /// 0007165 // signal transduction // inferred from electronic annotation 0005737 // cytoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398570_at BE113493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113493 /DB_XREF=gi:8505598 /DB_XREF=UI-R-CA0-axq-a-02-0-UI.s1 /CLONE=UI-R-CA0-axq-a-02-0-UI /FEA=EST /CNT=2 /TID=Rn.61455.1 /TIER=ConsEnd /STK=2 /UG=Rn.61455 /UG_TITLE=ESTs BE113493 1398571_x_at AI101732 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101732 /DB_XREF=gi:3706594 /DB_XREF=EST211021 /CLONE=RBRBU39 /FEA=EST /CNT=2 /TID=Rn.28099.1 /TIER=ConsEnd /STK=2 /UG=Rn.28099 /UG_TITLE=ESTs AI101732 hypothetical protein LOC685249 LOC685249 685249 XM_001063008 /// XM_002725230 1398572_at BI294251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294251 /DB_XREF=gi:14956533 /DB_XREF=UI-R-DK0-cea-d-12-0-UI.s1 /CLONE=UI-R-DK0-cea-d-12-0-UI /FEA=EST /CNT=13 /TID=Rn.8568.1 /TIER=ConsEnd /STK=1 /UG=Rn.8568 /UG_TITLE=ESTs, Weakly similar to Yeast ABD1 protein like (Caenorhabditis elegans) (C.elegans) BI294251 RNA (guanine-7-) methyltransferase Rnmt 291534 NM_001008299 0006370 // mRNA capping // inferred from electronic annotation /// 0006370 // mRNA capping // not recorded /// 0006370 // mRNA capping // inferred from sequence or structural similarity /// 0006397 // mRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from sequence or structural similarity /// 0004482 // mRNA (guanine-N7-)-methyltransferase activity // not recorded /// 0004482 // mRNA (guanine-N7-)-methyltransferase activity // inferred from sequence or structural similarity /// 0004482 // mRNA (guanine-N7-)-methyltransferase activity // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1398573_at BE098868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098868 /DB_XREF=gi:8490739 /DB_XREF=UI-R-BJ1-ate-g-06-0-UI.s1 /CLONE=UI-R-BJ1-ate-g-06-0-UI /FEA=EST /CNT=9 /TID=Rn.8231.1 /TIER=ConsEnd /STK=1 /UG=Rn.8231 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) BE098868 zinc finger with KRAB and SCAN domains 3 Zkscan3 306977 NM_001012053 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016032 // viral reproduction // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1398574_a_at AI170800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170800 /DB_XREF=gi:3710840 /DB_XREF=EST216739 /CLONE=RMUBB66 /FEA=EST /CNT=1 /TID=Rn.18698.2 /TIER=ConsEnd /STK=1 /UG=Rn.18698 /UG_TITLE=ESTs AI170800 cell division cycle 2-like 5 (cholinesterase-related cell division controller) Cdc2l5 306998 XM_001053539 /// XM_001053609 /// XM_225404 0006468 // protein phosphorylation // inferred from electronic annotation 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1398575_at AI716554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716554 /DB_XREF=gi:5033807 /DB_XREF=UI-R-Y0-abi-d-11-0-UI.s1 /CLONE=UI-R-Y0-abi-d-11-0-UI /FEA=EST /CNT=7 /TID=Rn.23809.1 /TIER=ConsEnd /STK=1 /UG=Rn.23809 /UG_TITLE=ESTs AI716554 zinc finger and BTB domain containing 5 Zbtb5 298084 NM_001106657 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398576_at AI237410 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI237410 /DB_XREF=gi:3830916 /DB_XREF=EST233972 /CLONE=RPLCY71 /FEA=EST /CNT=6 /TID=Rn.17544.1 /TIER=ConsEnd /STK=1 /UG=Rn.17544 /UG_TITLE=ESTs AI237410 1398577_at BI297744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297744 /DB_XREF=gi:14974024 /DB_XREF=UI-R-CV2-cha-b-07-0-UI.s1 /CLONE=UI-R-CV2-cha-b-07-0-UI /FEA=EST /CNT=6 /TID=Rn.18869.1 /TIER=ConsEnd /STK=1 /UG=Rn.18869 /UG_TITLE=ESTs, Weakly similar to A39684 hemiferrin - rat (R.norvegicus) BI297744 similar to RIKEN cDNA 1300017J02 RGD1310507 315963 NM_001047891 0006826 // iron ion transport // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded 0005576 // extracellular region // inferred from electronic annotation 0004857 // enzyme inhibitor activity // not recorded /// 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0008199 // ferric iron binding // inferred from electronic annotation 1398578_at AI102019 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102019 /DB_XREF=gi:3706854 /DB_XREF=EST211308 /CLONE=RBRBY03 /FEA=EST /CNT=5 /TID=Rn.55325.1 /TIER=ConsEnd /STK=1 /UG=Rn.55325 /UG_TITLE=ESTs AI102019 tweety homolog 1 (Drosophila) Ttyh1 292597 NM_001106225 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007155 // cell adhesion // inferred from electronic annotation /// 0016337 // cell-cell adhesion // not recorded /// 0031589 // cell-substrate adhesion // not recorded /// 0046847 // filopodium assembly // not recorded 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031527 // filopodium membrane // not recorded /// 0032433 // filopodium tip // not recorded /// 0034707 // chloride channel complex // inferred from electronic annotation 0005216 // ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation 1398579_at AA997808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA997808 /DB_XREF=gi:4285466 /DB_XREF=UI-R-C0-hv-e-10-0-UI.s1 /CLONE=UI-R-C0-hv-e-10-0-UI /FEA=EST /CNT=7 /TID=Rn.12778.1 /TIER=ConsEnd /STK=1 /UG=Rn.12778 /UG_TITLE=ESTs AA997808 early endosome antigen 1 Eea1 314764 NM_001108086 0006906 // vesicle fusion // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005769 // early endosome // not recorded /// 0005829 // cytosol // not recorded /// 0005969 // serine-pyruvate aminotransferase complex // not recorded /// 0019897 // extrinsic to plasma membrane // not recorded 0005515 // protein binding // not recorded /// 0005545 // phosphatidylinositol binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030742 // GTP-dependent protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1398580_at AW435480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435480 /DB_XREF=gi:6966787 /DB_XREF=UI-R-BJ0p-afu-h-11-0-UI.s1 /CLONE=UI-R-BJ0p-afu-h-11-0-UI /FEA=EST /CNT=4 /TID=Rn.38938.1 /TIER=ConsEnd /STK=1 /UG=Rn.38938 /UG_TITLE=ESTs AW435480 WD repeat domain 31 Wdr31 298096 NM_001011976 1398581_at AA956307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA956307 /DB_XREF=gi:4238701 /DB_XREF=UI-R-E1-fh-h-04-0-UI.s1 /CLONE=UI-R-E1-fh-h-04-0-UI /FEA=EST /CNT=4 /TID=Rn.8623.1 /TIER=ConsEnd /STK=1 /UG=Rn.8623 /UG_TITLE=ESTs AA956307 1398582_at AI045780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045780 /DB_XREF=gi:3292599 /DB_XREF=UI-R-C1-kl-g-02-0-UI.s1 /CLONE=UI-R-C1-kl-g-02-0-UI /FEA=EST /CNT=4 /TID=Rn.20921.1 /TIER=ConsEnd /STK=1 /UG=Rn.20921 /UG_TITLE=ESTs, Moderately similar to T08748 probable protein kinase DKFZp586C1419.1 (H.sapiens) AI045780 ribosomal protein S6 kinase, polypeptide 5 Rps6ka5 314384 NM_001108048 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0006508 // proteolysis // inferred from electronic annotation /// 0006950 // response to stress // not recorded /// 0007243 // intracellular protein kinase cascade // inferred from electronic annotation /// 0007243 // intracellular protein kinase cascade // not recorded /// 0009605 // response to external stimulus // not recorded /// 0016572 // histone phosphorylation // not recorded /// 0042221 // response to chemical stimulus // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1398583_at BE114791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE114791 /DB_XREF=gi:8506896 /DB_XREF=UI-R-BJ1-awp-d-03-0-UI.s1 /CLONE=UI-R-BJ1-awp-d-03-0-UI /FEA=EST /CNT=4 /TID=Rn.72709.1 /TIER=ConsEnd /STK=1 /UG=Rn.72709 /UG_TITLE=ESTs, Moderately similar to SNC5_HUMAN SNRNA ACTIVATING PROTEIN COMPLEX 19 KDA SUBUNIT (H.sapiens) BE114791 small nuclear RNA activating complex, polypeptide 5 Snapc5 691501 NM_001109643 1398584_at AA875307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA875307 /DB_XREF=gi:4231186 /DB_XREF=UI-R-E0-cn-f-07-0-UI.s1 /CLONE=UI-R-E0-cn-f-07-0-UI /FEA=EST /CNT=3 /TID=Rn.2873.1 /TIER=ConsEnd /STK=1 /UG=Rn.2873 /UG_TITLE=ESTs, Weakly similar to KERATIN, TYPE I CYTOSKELETAL 21 (R.norvegicus) AA875307 keratin complex 1, acidic, gene 5 Krt1-5 287698 NM_001008759 0045616 // regulation of keratinocyte differentiation // inferred from electronic annotation 0005882 // intermediate filament // inferred from electronic annotation /// 0045111 // intermediate filament cytoskeleton // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0030280 // structural constituent of epidermis // inferred from electronic annotation 1398585_at BE111456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111456 /DB_XREF=gi:8503561 /DB_XREF=UI-R-BJ1-avb-a-09-0-UI.s1 /CLONE=UI-R-BJ1-avb-a-09-0-UI /FEA=EST /CNT=3 /TID=Rn.53854.1 /TIER=ConsEnd /STK=1 /UG=Rn.53854 /UG_TITLE=ESTs BE111456 F-box protein 21 Fbxo21 360818 NM_001108338 1398586_at BF289133 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289133 /DB_XREF=gi:11220203 /DB_XREF=EST453724 /CLONE=RGIHB46 /FEA=EST /CNT=3 /TID=Rn.25292.1 /TIER=ConsEnd /STK=1 /UG=Rn.25292 /UG_TITLE=ESTs BF289133 1398587_at AA860035 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA860035 /DB_XREF=gi:4230596 /DB_XREF=UI-R-E0-bz-f-02-0-UI.s2 /CLONE=UI-R-E0-bz-f-02-0-UI /FEA=EST /CNT=3 /TID=Rn.43360.1 /TIER=ConsEnd /STK=1 /UG=Rn.43360 /UG_TITLE=ESTs AA860035 1398588_at BE098532 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098532 /DB_XREF=gi:8490396 /DB_XREF=UI-R-BJ1-asx-a-07-0-UI.s1 /CLONE=UI-R-BJ1-asx-a-07-0-UI /FEA=EST /CNT=3 /TID=Rn.53863.1 /TIER=ConsEnd /STK=1 /UG=Rn.53863 /UG_TITLE=ESTs, Weakly similar to T23407 hypothetical protein K07C5.6 - Caenorhabditis elegans (C.elegans) BE098532 SLU7 splicing factor homolog (S. cerevisiae) Slu7 303057 NM_001100550 0000375 // RNA splicing, via transesterification reactions // not recorded /// 0000375 // RNA splicing, via transesterification reactions // inferred from sequence or structural similarity /// 0000375 // RNA splicing, via transesterification reactions // inferred from electronic annotation /// 0000380 // alternative nuclear mRNA splicing, via spliceosome // not recorded /// 0000380 // alternative nuclear mRNA splicing, via spliceosome // inferred from sequence or structural similarity /// 0000380 // alternative nuclear mRNA splicing, via spliceosome // inferred from electronic annotation /// 0000389 // nuclear mRNA 3'-splice site recognition // not recorded /// 0000389 // nuclear mRNA 3'-splice site recognition // inferred from sequence or structural similarity /// 0000389 // nuclear mRNA 3'-splice site recognition // inferred from electronic annotation /// 0001558 // regulation of cell growth // inferred from mutant phenotype /// 0006259 // DNA metabolic process // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from mutant phenotype /// 0008380 // RNA splicing // inferred from electronic annotation /// 0045143 // homologous chromosome segregation // inferred from electronic annotation /// 0051276 // chromosome organization // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded /// 0005681 // spliceosomal complex // inferred from sequence or structural similarity /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded /// 0016607 // nuclear speck // inferred from sequence or structural similarity /// 0016607 // nuclear speck // inferred from electronic annotation /// 0030532 // small nuclear ribonucleoprotein complex // not recorded /// 0030532 // small nuclear ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030532 // small nuclear ribonucleoprotein complex // inferred from electronic annotation 0000386 // second spliceosomal transesterification activity // not recorded /// 0000386 // second spliceosomal transesterification activity // inferred from sequence or structural similarity /// 0000386 // second spliceosomal transesterification activity // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // not recorded /// 0008270 // zinc ion binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0030628 // pre-mRNA 3'-splice site binding // not recorded /// 0030628 // pre-mRNA 3'-splice site binding // inferred from sequence or structural similarity /// 0030628 // pre-mRNA 3'-splice site binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from physical interaction /// 0043022 // ribosome binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation 1398589_at AW434602 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434602 /DB_XREF=gi:6965909 /DB_XREF=UI-R-BJ0p-afi-a-10-0-UI.s1 /CLONE=UI-R-BJ0p-afi-a-10-0-UI /FEA=EST /CNT=3 /TID=Rn.54314.1 /TIER=ConsEnd /STK=1 /UG=Rn.54314 /UG_TITLE=ESTs AW434602 paired immunoglobin-like type 2 receptor alpha Pilra 288568 XM_002727399 /// XM_213732 0007165 // signal transduction // not recorded 0005515 // protein binding // not recorded 1398590_at AA965286 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965286 /DB_XREF=gi:4280160 /DB_XREF=UI-R-C0-hd-d-10-0-UI.s1 /CLONE=UI-R-C0-hd-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.12065.1 /TIER=ConsEnd /STK=1 /UG=Rn.12065 /UG_TITLE=ESTs AA965286 1398591_at AI707080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI707080 /DB_XREF=gi:4995021 /DB_XREF=UI-R-AA1-zw-f-06-0-UI.s1 /CLONE=UI-R-AA1-zw-f-06-0-UI /FEA=EST /CNT=2 /TID=Rn.67232.1 /TIER=ConsEnd /STK=1 /UG=Rn.67232 /UG_TITLE=ESTs, Weakly similar to chemokine (C-C) receptor 5 (Rattus norvegicus) (R.norvegicus) AI707080 chemokine (C-C motif) receptor-like 2 Ccrl2 316019 NM_001108191 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0016493 // C-C chemokine receptor activity // inferred from electronic annotation 1398592_at AI045966 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045966 /DB_XREF=gi:3290878 /DB_XREF=UI-R-C1-jt-h-06-0-UI.s1 /CLONE=UI-R-C1-jt-h-06-0-UI /FEA=EST /CNT=2 /TID=Rn.20710.1 /TIER=ConsEnd /STK=1 /UG=Rn.20710 /UG_TITLE=ESTs AI045966 1398593_at AI172305 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172305 /DB_XREF=gi:3712345 /DB_XREF=EST218306 /CLONE=RMUBX60 /FEA=EST /CNT=2 /TID=Rn.22479.1 /TIER=ConsEnd /STK=1 /UG=Rn.22479 /UG_TITLE=ESTs AI172305 similar to RIKEN cDNA 2310003M01 LOC298139 298139 NM_001013930 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 1398594_at AI029767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029767 /DB_XREF=gi:4300833 /DB_XREF=UI-R-C0-iz-b-04-0-UI.s1 /CLONE=UI-R-C0-iz-b-04-0-UI /FEA=EST /CNT=2 /TID=Rn.22289.2 /TIER=ConsEnd /STK=1 /UG=Rn.22289 /UG_TITLE=ESTs AI029767 1398595_at AI070585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070585 /DB_XREF=gi:3396836 /DB_XREF=UI-R-C2-mr-e-01-0-UI.s1 /CLONE=UI-R-C2-mr-e-01-0-UI /FEA=EST /CNT=2 /TID=Rn.21327.1 /TIER=ConsEnd /STK=1 /UG=Rn.21327 /UG_TITLE=ESTs AI070585 RNA binding motif protein 5 Rbm5 300996 NM_001100548 0000245 // spliceosome assembly // not recorded /// 0000245 // spliceosome assembly // inferred from sequence or structural similarity /// 0000245 // spliceosome assembly // inferred from electronic annotation /// 0000381 // regulation of alternative nuclear mRNA splicing, via spliceosome // not recorded /// 0000381 // regulation of alternative nuclear mRNA splicing, via spliceosome // inferred from sequence or structural similarity /// 0000381 // regulation of alternative nuclear mRNA splicing, via spliceosome // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0043065 // positive regulation of apoptosis // not recorded /// 0043065 // positive regulation of apoptosis // inferred from sequence or structural similarity /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0003729 // mRNA binding // inferred from sequence or structural similarity /// 0003729 // mRNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398596_at AA925896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925896 /DB_XREF=gi:4237087 /DB_XREF=UI-R-A1-es-e-03-0-UI.s1 /CLONE=UI-R-A1-es-e-03-0-UI /FEA=EST /CNT=10 /TID=Rn.3832.1 /TIER=ConsEnd /STK=0 /UG=Rn.3832 /UG_TITLE=ESTs AA925896 natural killer tumor recognition sequence-like LOC100364165 100364165 XR_085903 1398597_at AI044699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044699 /DB_XREF=gi:3291560 /DB_XREF=UI-R-C1-kd-e-05-0-UI.s1 /CLONE=UI-R-C1-kd-e-05-0-UI /FEA=EST /CNT=11 /TID=Rn.30788.1 /TIER=ConsEnd /STK=0 /UG=Rn.30788 /UG_TITLE=ESTs AI044699 1398598_at BF549679 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF549679 /DB_XREF=gi:11659409 /DB_XREF=UI-R-A0-as-h-04-0-UI.r1 /CLONE=UI-R-A0-as-h-04-0-UI /FEA=EST /CNT=15 /TID=Rn.17178.1 /TIER=ConsEnd /STK=0 /UG=Rn.17178 /UG_TITLE=ESTs, Highly similar to ACFX_HUMAN Trabeculin-beta (H.sapiens) BF549679 0007050 // cell cycle arrest // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation 1398599_at BG664929 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG664929 /DB_XREF=gi:13886851 /DB_XREF=DRABRD02 /CLONE=DRABRD02 /FEA=EST /CNT=7 /TID=Rn.34586.2 /TIER=ConsEnd /STK=0 /UG=Rn.34586 /UG_TITLE=ESTs, Highly similar to STT3 MOUSE OLIGOSACCHARYL TRANSFERASE STT3 SUBUNIT HOMOLOG (M.musculus) BG664929 STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae) Stt3a 500972 NM_001134749 0006486 // protein glycosylation // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // inferred from electronic annotation /// 0018279 // protein N-linked glycosylation via asparagine // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0008250 // oligosaccharyltransferase complex // inferred from electronic annotation /// 0008250 // oligosaccharyltransferase complex // not recorded /// 0016020 // membrane // inferred from electronic annotation 0004576 // oligosaccharyl transferase activity // inferred from electronic annotation 1398600_at AW524565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW524565 /DB_XREF=gi:7166950 /DB_XREF=UI-R-BO0-ahz-h-06-0-UI.s1 /CLONE=UI-R-BO0-ahz-h-06-0-UI /FEA=EST /CNT=7 /TID=Rn.23576.1 /TIER=ConsEnd /STK=0 /UG=Rn.23576 /UG_TITLE=ESTs AW524565 1398601_at AW143872 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143872 /DB_XREF=gi:6163771 /DB_XREF=EST294168 /CLONE=RGICB89 /FEA=EST /CNT=8 /TID=Rn.6809.1 /TIER=ConsEnd /STK=0 /UG=Rn.6809 /UG_TITLE=ESTs AW143872 spire homolog 1 (Drosophila) Spire1 307348 NM_001107381 0048193 // Golgi vesicle transport // not recorded 0005794 // Golgi apparatus // not recorded 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1398602_at AW143296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW143296 /DB_XREF=gi:6163195 /DB_XREF=EST293592 /CLONE=RGIBJ77 /FEA=EST /CNT=7 /TID=Rn.34733.1 /TIER=ConsEnd /STK=0 /UG=Rn.34733 /UG_TITLE=ESTs, Moderately similar to MD21_MOUSE MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2A (MAD2-LIKE 1) (M.musculus) AW143296 MAD2 mitotic arrest deficient-like 1 (yeast) Mad2l1 297176 NM_001106594 0000070 // mitotic sister chromatid segregation // not recorded /// 0007067 // mitosis // inferred from electronic annotation /// 0007093 // mitotic cell cycle checkpoint // not recorded /// 0007094 // mitotic cell cycle spindle assembly checkpoint // not recorded /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000775 // chromosome, centromeric region // not recorded /// 0000776 // kinetochore // not recorded /// 0005634 // nucleus // not recorded /// 0005643 // nuclear pore // not recorded /// 0005816 // spindle pole body // not recorded /// 0005829 // cytosol // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0042803 // protein homodimerization activity // not recorded 1398603_at AA957514 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957514 /DB_XREF=gi:4277404 /DB_XREF=UI-R-E1-gb-f-11-0-UI.s1 /CLONE=UI-R-E1-gb-f-11-0-UI /FEA=EST /CNT=6 /TID=Rn.9309.1 /TIER=ConsEnd /STK=0 /UG=Rn.9309 /UG_TITLE=ESTs, Moderately similar to EFTS_HUMAN ELONGATION FACTOR TS, MITOCHONDRIAL PRECURSOR (EF-TS) (EF-TSMT) (H.sapiens) AA957514 1398604_at AI112698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI112698 /DB_XREF=gi:3512647 /DB_XREF=UI-R-Y0-mk-e-12-0-UI.s2 /CLONE=UI-R-Y0-mk-e-12-0-UI /FEA=EST /CNT=6 /TID=Rn.40484.1 /TIER=ConsEnd /STK=0 /UG=Rn.40484 /UG_TITLE=ESTs, Highly similar to T02435 probable oxysterol-binding protein DJ430N08.1 (H.sapiens) AI112698 oxysterol binding protein 2 Osbp2 305475 NM_001107232 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation 1398605_at BI289978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289978 /DB_XREF=gi:14948109 /DB_XREF=UI-R-DK0-cfq-d-09-0-UI.s1 /CLONE=UI-R-DK0-cfq-d-09-0-UI /FEA=EST /CNT=9 /TID=Rn.19042.1 /TIER=ConsEnd /STK=0 /UG=Rn.19042 /UG_TITLE=ESTs BI289978 similar to cDNA sequence BC025641 RGD1306730 309009 NM_001039608 1398606_at BM391878 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391878 /DB_XREF=gi:18191931 /DB_XREF=UI-R-DO1-cmk-n-04-0-UI.s1 /CLONE=UI-R-DO1-cmk-n-04-0-UI /FEA=EST /CNT=6 /TID=Rn.24186.1 /TIER=ConsEnd /STK=0 /UG=Rn.24186 /UG_TITLE=ESTs BM391878 golgi integral membrane protein 4 Golim4 310526 NM_001191567 /// XM_001062460 /// XM_001062524 /// XM_001070329 /// XM_002725982 /// XM_002729046 /// XM_227268 0006810 // transport // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation 1398607_at AI717510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI717510 /DB_XREF=gi:5034766 /DB_XREF=UI-R-Y0-acp-a-04-0-UI.s1 /CLONE=UI-R-Y0-acp-a-04-0-UI /FEA=EST /CNT=5 /TID=Rn.21239.1 /TIER=ConsEnd /STK=0 /UG=Rn.21239 /UG_TITLE=ESTs AI717510 Similar to KIAA0240 RGD1305680 301235 NM_001106888 1398608_at BG371578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371578 /DB_XREF=gi:13268115 /DB_XREF=UI-R-CW0-bvx-a-11-0-UI.s1 /CLONE=UI-R-CW0-bvx-a-11-0-UI /FEA=EST /CNT=5 /TID=Rn.3322.1 /TIER=ConsEnd /STK=0 /UG=Rn.3322 /UG_TITLE=ESTs BG371578 centromere protein L Cenpl 289150 NM_001033061 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 1398609_at BI288829 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288829 /DB_XREF=gi:14945789 /DB_XREF=UI-R-DK0-cdf-d-04-0-UI.s1 /CLONE=UI-R-DK0-cdf-d-04-0-UI /FEA=EST /CNT=5 /TID=Rn.16485.1 /TIER=ConsEnd /STK=0 /UG=Rn.16485 /UG_TITLE=ESTs, Weakly similar to T24556 hypothetical protein T05H10.5 - Caenorhabditis elegans (C.elegans) BI288829 U-box domain containing 5 Ubox5 296161 NM_001033997 0000209 // protein polyubiquitination // inferred from electronic annotation /// 0000209 // protein polyubiquitination // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0034450 // ubiquitin-ubiquitin ligase activity // inferred from electronic annotation /// 0034450 // ubiquitin-ubiquitin ligase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1398610_at BG375744 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375744 /DB_XREF=gi:13300216 /DB_XREF=UI-R-CS0-bte-h-06-0-UI.s1 /CLONE=UI-R-CS0-bte-h-06-0-UI /FEA=EST /CNT=5 /TID=Rn.40900.1 /TIER=ConsEnd /STK=0 /UG=Rn.40900 /UG_TITLE=ESTs BG375744 nicolin 1 Nicn1 619581 NM_001034999 1398611_at BG671713 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671713 /DB_XREF=gi:13893812 /DB_XREF=DRNBWH03 /CLONE=DRNBWH03 /FEA=EST /CNT=6 /TID=Rn.21178.1 /TIER=ConsEnd /STK=0 /UG=Rn.21178 /UG_TITLE=ESTs, Highly similar to CU4B_HUMAN CULLIN HOMOLOG 4B (H.sapiens) BG671713 cullin 4B Cul4b 302502 NM_001106951 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // not recorded /// 0045750 // positive regulation of S phase of mitotic cell cycle // not recorded 0031461 // cullin-RING ubiquitin ligase complex // inferred from electronic annotation /// 0031465 // Cul4B-RING ubiquitin ligase complex // not recorded 0005515 // protein binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation 1398612_at BM383010 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383010 /DB_XREF=gi:18183063 /DB_XREF=UI-R-DS0-cje-e-11-0-UI.s1 /CLONE=UI-R-DS0-cje-e-11-0-UI /FEA=EST /CNT=5 /TID=Rn.43579.1 /TIER=ConsEnd /STK=0 /UG=Rn.43579 /UG_TITLE=ESTs, Highly similar to 2008147A protein RAKb (R.norvegicus) BM383010 aldo-keto reductase family 1, member C12 Akr1c12 361266 NM_001170342 0055114 // oxidation reduction // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation 1398613_at AW532063 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532063 /DB_XREF=gi:7174477 /DB_XREF=UI-R-BS0-amn-g-02-0-UI.s1 /CLONE=UI-R-BS0-amn-g-02-0-UI /FEA=EST /CNT=4 /TID=Rn.7665.1 /TIER=ConsEnd /STK=0 /UG=Rn.7665 /UG_TITLE=ESTs AW532063 1398614_at BE109565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109565 /DB_XREF=gi:8501670 /DB_XREF=UI-R-BJ1-avp-f-04-0-UI.s1 /CLONE=UI-R-BJ1-avp-f-04-0-UI /FEA=EST /CNT=4 /TID=Rn.44932.1 /TIER=ConsEnd /STK=0 /UG=Rn.44932 /UG_TITLE=ESTs, Highly similar to PTC1 MOUSE PATCHED PROTEIN HOMOLOG 1 (M.musculus) BE109565 patched homolog 1 (Drosophila) Ptch1 89830 NM_053566 0001841 // neural tube formation // not recorded /// 0001841 // neural tube formation // inferred from electronic annotation /// 0001843 // neural tube closure // not recorded /// 0001843 // neural tube closure // inferred from electronic annotation /// 0003007 // heart morphogenesis // not recorded /// 0003007 // heart morphogenesis // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // not recorded /// 0007224 // smoothened signaling pathway // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // inferred from sequence or structural similarity /// 0007389 // pattern specification process // not recorded /// 0007389 // pattern specification process // inferred from electronic annotation /// 0008544 // epidermis development // not recorded /// 0008544 // epidermis development // inferred from electronic annotation /// 0008589 // regulation of smoothened signaling pathway // not recorded /// 0008589 // regulation of smoothened signaling pathway // inferred from electronic annotation /// 0008589 // regulation of smoothened signaling pathway // inferred from sequence or structural similarity /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009887 // organ morphogenesis // not recorded /// 0009887 // organ morphogenesis // inferred from electronic annotation /// 0009887 // organ morphogenesis // inferred from sequence or structural similarity /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // inferred from sequence or structural similarity /// 0010157 // response to chlorate // not recorded /// 0010157 // response to chlorate // inferred from electronic annotation /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0016485 // protein processing // not recorded /// 0016485 // protein processing // inferred from electronic annotation /// 0016485 // protein processing // inferred from sequence or structural similarity /// 0021904 // dorsal/ventral neural tube patterning // not recorded /// 0021904 // dorsal/ventral neural tube patterning // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030326 // embryonic limb morphogenesis // inferred from sequence or structural similarity /// 0030879 // mammary gland development // not recorded /// 0030879 // mammary gland development // inferred from electronic annotation /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0032526 // response to retinoic acid // inferred from expression pattern /// 0035137 // hindlimb morphogenesis // not recorded /// 0035137 // hindlimb morphogenesis // inferred from electronic annotation /// 0040008 // regulation of growth // not recorded /// 0040008 // regulation of growth // inferred from electronic annotation /// 0040015 // negative regulation of multicellular organism growth // not recorded /// 0040015 // negative regulation of multicellular organism growth // inferred from electronic annotation /// 0040015 // negative regulation of multicellular organism growth // inferred from sequence or structural similarity /// 0042493 // response to drug // inferred from expression pattern /// 0042593 // glucose homeostasis // not recorded /// 0042593 // glucose homeostasis // inferred from electronic annotation /// 0043616 // keratinocyte proliferation // not recorded /// 0043616 // keratinocyte proliferation // inferred from electronic annotation /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050680 // negative regulation of epithelial cell proliferation // inferred from electronic annotation /// 0060603 // mammary gland duct morphogenesis // not recorded /// 0060603 // mammary gland duct morphogenesis // inferred from electronic annotation /// 0060644 // mammary gland epithelial cell differentiation // not recorded /// 0060644 // mammary gland epithelial cell differentiation // inferred from electronic annotation 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005113 // patched binding // not recorded /// 0005113 // patched binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008158 // hedgehog receptor activity // inferred from electronic annotation /// 0008201 // heparin binding // not recorded /// 0008201 // heparin binding // inferred from electronic annotation 1398615_at BG379594 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG379594 /DB_XREF=gi:13304066 /DB_XREF=UI-R-CS0-bti-g-11-0-UI.s1 /CLONE=UI-R-CS0-bti-g-11-0-UI /FEA=EST /CNT=4 /TID=Rn.20246.1 /TIER=ConsEnd /STK=0 /UG=Rn.20246 /UG_TITLE=ESTs BG379594 GTPase activating Rap/RanGAP domain-like 4 Garnl4 303298 NM_001107019 0051056 // regulation of small GTPase mediated signal transduction // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0005096 // GTPase activator activity // inferred from electronic annotation 1398616_at AI045228 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045228 /DB_XREF=gi:3292047 /DB_XREF=UI-R-C1-kh-a-12-0-UI.s1 /CLONE=UI-R-C1-kh-a-12-0-UI /FEA=EST /CNT=4 /TID=Rn.17309.1 /TIER=ConsEnd /STK=0 /UG=Rn.17309 /UG_TITLE=ESTs AI045228 adaptor-related protein complex 1, sigma 2 subunit Ap1s2 302671 NM_001127531 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005829 // cytosol // not recorded /// 0030117 // membrane coat // inferred from electronic annotation /// 0030130 // clathrin coat of trans-Golgi network vesicle // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 1398617_at BE098167 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE098167 /DB_XREF=gi:8489995 /DB_XREF=UI-R-BJ1-ata-c-03-0-UI.s1 /CLONE=UI-R-BJ1-ata-c-03-0-UI /FEA=EST /CNT=4 /TID=Rn.19839.1 /TIER=ConsEnd /STK=0 /UG=Rn.19839 /UG_TITLE=ESTs BE098167 1398618_s_at AW435170 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435170 /DB_XREF=gi:6966477 /DB_XREF=UI-R-BJ0p-afj-d-01-0-UI.s1 /CLONE=UI-R-BJ0p-afj-d-01-0-UI /FEA=EST /CNT=4 /TID=Rn.50523.1 /TIER=ConsEnd /STK=0 /UG=Rn.50523 /UG_TITLE=ESTs AW435170 1398619_at BG671918 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671918 /DB_XREF=gi:13894017 /DB_XREF=DRNBZF03 /CLONE=DRNBZF03 /FEA=EST /CNT=3 /TID=Rn.76747.1 /TIER=ConsEnd /STK=0 /UG=Rn.76747 /UG_TITLE=ESTs BG671918 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0035097 // histone methyltransferase complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0042800 // histone methyltransferase activity (H3-K4 specific) // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398620_at BF397903 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF397903 /DB_XREF=gi:11382888 /DB_XREF=UI-R-BS2-bef-a-05-0-UI.s1 /CLONE=UI-R-BS2-bef-a-05-0-UI /FEA=EST /CNT=3 /TID=Rn.20729.1 /TIER=ConsEnd /STK=0 /UG=Rn.20729 /UG_TITLE=ESTs BF397903 Sterile alpha motif domain containing 4A Samd4a 305826 NM_001107254 0006417 // regulation of translation // inferred from electronic annotation /// 0045727 // positive regulation of translation // inferred from electronic annotation /// 0045727 // positive regulation of translation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0019717 // synaptosome // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0030371 // translation repressor activity // inferred from electronic annotation /// 0030371 // translation repressor activity // not recorded 1398621_at AI059530 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059530 /DB_XREF=gi:3333307 /DB_XREF=UI-R-C1-kw-e-05-0-UI.s1 /CLONE=UI-R-C1-kw-e-05-0-UI /FEA=EST /CNT=3 /TID=Rn.19201.1 /TIER=ConsEnd /STK=0 /UG=Rn.19201 /UG_TITLE=ESTs AI059530 adenylate kinase 7 Ak7 314416 NM_001108055 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0019205 // nucleobase, nucleoside, nucleotide kinase activity // inferred from electronic annotation 1398622_at AI703807 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI703807 /DB_XREF=gi:4991707 /DB_XREF=UI-R-AC1-xn-e-07-0-UI.s1 /CLONE=UI-R-AC1-xn-e-07-0-UI /FEA=EST /CNT=3 /TID=Rn.24755.1 /TIER=ConsEnd /STK=0 /UG=Rn.24755 /UG_TITLE=ESTs AI703807 Cysteine rich transmembrane BMP regulator 1 (chordin like) Crim1 298744 NM_001169103 0001558 // regulation of cell growth // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0005520 // insulin-like growth factor binding // inferred from electronic annotation 1398623_at AI454607 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI454607 /DB_XREF=gi:4294910 /DB_XREF=UI-R-A0-ap-g-01-0-UI.s1 /CLONE=UI-R-A0-ap-g-01-0-UI /FEA=EST /CNT=3 /TID=Rn.25397.1 /TIER=ConsEnd /STK=0 /UG=Rn.25397 /UG_TITLE=ESTs AI454607 cholinergic receptor, nicotinic, beta 4 Chrnb4 25103 NM_052806 0001508 // regulation of action potential // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006939 // smooth muscle contraction // not recorded /// 0006940 // regulation of smooth muscle contraction // not recorded /// 0007165 // signal transduction // not recorded /// 0007626 // locomotory behavior // not recorded /// 0035094 // response to nicotine // not recorded /// 0035095 // behavioral response to nicotine // not recorded /// 0042391 // regulation of membrane potential // not recorded /// 0051291 // protein heterooligomerization // inferred from direct assay /// 0060084 // synaptic transmission involved in micturition // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // inferred from direct assay /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // not recorded /// 0005892 // nicotinic acetylcholine-gated receptor-channel complex // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred by curator /// 0004889 // nicotinic acetylcholine-activated cation-selective channel activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0008144 // drug binding // inferred from direct assay /// 0015464 // acetylcholine receptor activity // not recorded /// 0042166 // acetylcholine binding // inferred from direct assay 1398624_x_at AA957044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957044 /DB_XREF=gi:4239517 /DB_XREF=UI-R-E1-ge-a-04-0-UI.s1 /CLONE=UI-R-E1-ge-a-04-0-UI /FEA=EST /CNT=3 /TID=Rn.9172.1 /TIER=ConsEnd /STK=0 /UG=Rn.9172 /UG_TITLE=ESTs AA957044 tubulin, beta 4 Tubb4 29213 NM_080882 0007017 // microtubule-based process // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation /// 0051258 // protein polymerization // inferred from electronic annotation 0005874 // microtubule // inferred from electronic annotation /// 0043234 // protein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1398625_at BG673169 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG673169 /DB_XREF=gi:13895268 /DB_XREF=DRNBOG11 /CLONE=DRNBOG11 /FEA=EST /CNT=3 /TID=Rn.19602.1 /TIER=ConsEnd /STK=0 /UG=Rn.19602 /UG_TITLE=ESTs BG673169 1398626_s_at AW920881 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW920881 /DB_XREF=gi:8086698 /DB_XREF=EST352185 /CLONE=RGIHH82 /FEA=EST /CNT=3 /TID=Rn.65169.1 /TIER=ConsEnd /STK=0 /UG=Rn.65169 /UG_TITLE=ESTs, Highly similar to ARP2_HUMAN ACTIN-LIKE PROTEIN 2 (H.sapiens) AW920881 ARP2 actin-related protein 2 homolog (yeast) Actr2 289820 NM_001009268 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0042995 // cell projection // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1398627_at AA819889 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819889 /DB_XREF=gi:4228141 /DB_XREF=UI-R-A0-aq-c-02-0-UI.s1 /CLONE=UI-R-A0-aq-c-02-0-UI /FEA=EST /CNT=2 /TID=Rn.16689.1 /TIER=ConsEnd /STK=0 /UG=Rn.16689 /UG_TITLE=ESTs AA819889 1398628_at AI059960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI059960 /DB_XREF=gi:3333737 /DB_XREF=UI-R-C1-la-c-04-0-UI.s1 /CLONE=UI-R-C1-la-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.19324.2 /TIER=ConsEnd /STK=0 /UG=Rn.19324 /UG_TITLE=ESTs, Weakly similar to LPH RAT LACTASE-PHLORIZIN HYDROLASE PRECURSOR (R.norvegicus) AI059960 glucosidase, beta, acid 3 (cytosolic) Gba3 289687 NM_001106010 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0016139 // glycoside catabolic process // inferred from electronic annotation /// 0046477 // glycosylceramide catabolic process // inferred from electronic annotation 0005829 // cytosol // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004565 // beta-galactosidase activity // inferred from electronic annotation /// 0008422 // beta-glucosidase activity // inferred from electronic annotation /// 0017042 // glycosylceramidase activity // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation 1398629_at AA817985 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817985 /DB_XREF=gi:4198508 /DB_XREF=UI-R-A0-ah-a-04-0-UI.s1 /CLONE=UI-R-A0-ah-a-04-0-UI /FEA=EST /CNT=2 /TID=Rn.16819.1 /TIER=ConsEnd /STK=0 /UG=Rn.16819 /UG_TITLE=ESTs AA817985 1398630_at AA901095 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901095 /DB_XREF=gi:4233594 /DB_XREF=UI-R-A1-do-c-03-0-UI.s1 /CLONE=UI-R-A1-do-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.15185.1 /TIER=ConsEnd /STK=0 /UG=Rn.15185 /UG_TITLE=ESTs AA901095 high mobility group box 1 /// Ac2-008-like Hmgb1 /// LOC100361707 100361707 /// 25459 NM_012963 /// XM_002727933 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000902 // cell morphogenesis // inferred from mutant phenotype /// 0001654 // eye development // not recorded /// 0001934 // positive regulation of protein phosphorylation // not recorded /// 0002053 // positive regulation of mesenchymal cell proliferation // inferred from direct assay /// 0002437 // inflammatory response to antigenic stimulus // not recorded /// 0006288 // base-excision repair, DNA ligation // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006935 // chemotaxis // inferred from direct assay /// 0007399 // nervous system development // inferred from mutant phenotype /// 0007623 // circadian rhythm // inferred from expression pattern /// 0008156 // negative regulation of DNA replication // inferred from direct assay /// 0008284 // positive regulation of cell proliferation // inferred from direct assay /// 0009408 // response to heat // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0010942 // positive regulation of cell death // inferred from mutant phenotype /// 0010976 // positive regulation of neuron projection development // inferred from mutant phenotype /// 0014911 // positive regulation of smooth muscle cell migration // inferred from mutant phenotype /// 0017055 // negative regulation of RNA polymerase II transcriptional preinitiation complex assembly // not recorded /// 0030324 // lung development // not recorded /// 0030335 // positive regulation of cell migration // inferred from direct assay /// 0031175 // neuron projection development // inferred from genetic interaction /// 0031532 // actin cytoskeleton reorganization // inferred from mutant phenotype /// 0032392 // DNA geometric change // inferred from direct assay /// 0032496 // response to lipopolysaccharide // inferred from expression pattern /// 0032868 // response to insulin stimulus // inferred from expression pattern /// 0033034 // positive regulation of myeloid cell apoptosis // inferred from direct assay /// 0033151 // V(D)J recombination // not recorded /// 0034341 // response to interferon-gamma // inferred from mutant phenotype /// 0042493 // response to drug // inferred from expression pattern /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // not recorded /// 0043280 // positive regulation of caspase activity // not recorded /// 0043388 // positive regulation of DNA binding // not recorded /// 0045639 // positive regulation of myeloid cell differentiation // not recorded /// 0045663 // positive regulation of myoblast differentiation // inferred from mutant phenotype /// 0045819 // positive regulation of glycogen catabolic process // not recorded /// 0045931 // positive regulation of mitotic cell cycle // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0050727 // regulation of inflammatory response // inferred from direct assay /// 0050790 // regulation of catalytic activity // not recorded /// 0050831 // male-specific defense response to bacterium // inferred from direct assay /// 0050930 // induction of positive chemotaxis // inferred from direct assay /// 0051384 // response to glucocorticoid stimulus // not recorded /// 0051450 // myoblast proliferation // inferred from mutant phenotype /// 0071347 // cellular response to interleukin-1 // inferred from expression pattern 0000793 // condensed chromosome // not recorded /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0017053 // transcriptional repressor complex // not recorded /// 0043005 // neuron projection // not recorded 0000400 // four-way junction DNA binding // inferred from direct assay /// 0000401 // open form four-way junction DNA binding // inferred from direct assay /// 0000402 // crossed form four-way junction DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003681 // bent DNA binding // inferred from direct assay /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005125 // cytokine activity // not recorded /// 0005125 // cytokine activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008097 // 5S rRNA binding // inferred from direct assay /// 0008134 // transcription factor binding // not recorded /// 0008201 // heparin binding // inferred from direct assay /// 0008201 // heparin binding // traceable author statement /// 0008201 // heparin binding // inferred from electronic annotation /// 0008301 // DNA bending activity // inferred from direct assay /// 0008301 // DNA bending activity // not recorded /// 0010858 // calcium-dependent protein kinase regulator activity // not recorded /// 0030295 // protein kinase activator activity // not recorded /// 0046983 // protein dimerization activity // inferred from direct assay /// 0050786 // RAGE receptor binding // inferred from mutant phenotype /// 0050786 // RAGE receptor binding // inferred from physical interaction /// 0051861 // glycolipid binding // inferred from direct assay /// 0070491 // transcription repressor binding // not recorded 1398631_at AI136601 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136601 /DB_XREF=gi:3637378 /DB_XREF=UI-R-C2p-ob-c-03-0-UI.s1 /CLONE=UI-R-C2p-ob-c-03-0-UI /FEA=EST /CNT=2 /TID=Rn.6826.1 /TIER=ConsEnd /STK=0 /UG=Rn.6826 /UG_TITLE=ESTs AI136601 GTP binding protein 6 (putative) Gtpbp6 363931 NM_001135840 0005622 // intracellular // inferred from electronic annotation 0005525 // GTP binding // inferred from electronic annotation 1398632_at BF405279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405279 /DB_XREF=gi:11393254 /DB_XREF=UI-R-CA1-biw-e-11-0-UI.s1 /CLONE=UI-R-CA1-biw-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.60448.1 /TIER=ConsEnd /STK=3 /UG=Rn.60448 /UG_TITLE=ESTs BF405279 1398633_at AI136344 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136344 /DB_XREF=gi:3637121 /DB_XREF=UI-R-C2p-oa-h-12-0-UI.s1 /CLONE=UI-R-C2p-oa-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.23673.2 /TIER=ConsEnd /STK=2 /UG=Rn.23673 /UG_TITLE=ESTs, Weakly similar to S36152 MHC class III histocompatibility antigen HLA-B-associated protein 2 (H.sapiens) AI136344 BAT2 domain containing 1 Bat2d1 360865 XM_002724884 /// XM_341141 0008022 // protein C-terminus binding // not recorded 1398634_at AI030835 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030835 /DB_XREF=gi:3248661 /DB_XREF=UI-R-C0-je-g-04-0-UI.s1 /CLONE=UI-R-C0-je-g-04-0-UI /FEA=EST /CNT=3 /TID=Rn.12393.1 /TIER=ConsEnd /STK=2 /UG=Rn.12393 /UG_TITLE=ESTs AI030835 hypothetical protein LOC686032 LOC686032 686032 NM_001195606 /// XM_001053427 /// XM_001066267 1398635_at BF565662 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565662 /DB_XREF=gi:11675392 /DB_XREF=UI-R-BT1-ako-f-11-0-UI.r1 /CLONE=UI-R-BT1-ako-f-11-0-UI /FEA=EST /CNT=2 /TID=Rn.46917.1 /TIER=ConsEnd /STK=2 /UG=Rn.46917 /UG_TITLE=ESTs BF565662 1398636_at BE110303 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110303 /DB_XREF=gi:8502408 /DB_XREF=UI-R-CA0-axl-d-09-0-UI.s1 /CLONE=UI-R-CA0-axl-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.51866.1 /TIER=ConsEnd /STK=2 /UG=Rn.51866 /UG_TITLE=ESTs BE110303 similar to Nef associated protein 1 RGD1305420 298072 NM_001025652 0016787 // hydrolase activity // inferred from electronic annotation 1398637_at AA893390 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893390 /DB_XREF=gi:3020269 /DB_XREF=EST197193 /CLONE=RKIBF80 /FEA=EST /CNT=2 /TID=Rn.22742.1 /TIER=ConsEnd /STK=2 /UG=Rn.22742 /UG_TITLE=ESTs AA893390 1398638_at AI045011 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045011 /DB_XREF=gi:3291830 /DB_XREF=UI-R-C1-ke-h-08-0-UI.s1 /CLONE=UI-R-C1-ke-h-08-0-UI /FEA=EST /CNT=2 /TID=Rn.20830.1 /TIER=ConsEnd /STK=1 /UG=Rn.20830 /UG_TITLE=ESTs AI045011 fidgetin-like 1 Fignl1 289777 NM_001011913 0046034 // ATP metabolic process // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398639_at AI146049 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146049 /DB_XREF=gi:3667848 /DB_XREF=UI-R-BT0-qg-d-12-0-UI.s1 /CLONE=UI-R-BT0-qg-d-12-0-UI /FEA=EST /CNT=2 /TID=Rn.28714.1 /TIER=ConsEnd /STK=1 /UG=Rn.28714 /UG_TITLE=ESTs AI146049 1398640_at AI044871 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI044871 /DB_XREF=gi:3291690 /DB_XREF=UI-R-C1-kd-f-08-0-UI.s1 /CLONE=UI-R-C1-kd-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.16047.1 /TIER=ConsEnd /STK=1 /UG=Rn.16047 /UG_TITLE=ESTs AI044871 1398641_at AI058924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI058924 /DB_XREF=gi:3332701 /DB_XREF=UI-R-C1-ks-f-05-0-UI.s1 /CLONE=UI-R-C1-ks-f-05-0-UI /FEA=EST /CNT=2 /TID=Rn.21014.1 /TIER=ConsEnd /STK=1 /UG=Rn.21014 /UG_TITLE=ESTs AI058924 pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3 Plekha3 295674 NM_001013077 0005543 // phospholipid binding // not recorded /// 0005545 // phosphatidylinositol binding // inferred from electronic annotation /// 0005545 // phosphatidylinositol binding // not recorded 1398642_at BI279274 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279274 /DB_XREF=gi:14926932 /DB_XREF=UI-R-DA0-bym-d-05-0-UI.s1 /CLONE=UI-R-DA0-bym-d-05-0-UI /FEA=EST /CNT=1 /TID=Rn.77920.1 /TIER=ConsEnd /STK=1 /UG=Rn.77920 /UG_TITLE=EST BI279274 5-methyltetrahydrofolate-homocysteine methyltransferase reductase Mtrr 290947 NM_001039003 0055114 // oxidation reduction // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0010181 // FMN binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1398643_at BF388566 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388566 /DB_XREF=gi:11373390 /DB_XREF=UI-R-BS2-bdd-a-04-0-UI.s1 /CLONE=UI-R-BS2-bdd-a-04-0-UI /FEA=EST /CNT=1 /TID=Rn.48178.3 /TIER=ConsEnd /STK=1 /UG=Rn.48178 /UG_TITLE=ESTs, Highly similar to T34544 hypothetical protein DKFZp434A0427.1 (H.sapiens) BF388566 dicer 1, ribonuclease type III Dicer1 299284 XM_001068155 /// XM_001069041 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0006396 // RNA processing // inferred from electronic annotation /// 0006396 // RNA processing // not recorded /// 0019827 // stem cell maintenance // inferred from electronic annotation /// 0019827 // stem cell maintenance // not recorded /// 0030324 // lung development // inferred from electronic annotation /// 0030324 // lung development // not recorded /// 0030326 // embryonic limb morphogenesis // not recorded /// 0030326 // embryonic limb morphogenesis // inferred from electronic annotation /// 0030422 // production of siRNA involved in RNA interference // inferred from electronic annotation /// 0030422 // production of siRNA involved in RNA interference // not recorded /// 0030423 // targeting of mRNA for destruction involved in RNA interference // inferred from electronic annotation /// 0030423 // targeting of mRNA for destruction involved in RNA interference // not recorded /// 0031054 // pre-microRNA processing // inferred from electronic annotation /// 0031054 // pre-microRNA processing // not recorded /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0035196 // production of miRNAs involved in gene silencing by miRNA // not recorded /// 0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // inferred from electronic annotation /// 0048754 // branching morphogenesis of a tube // not recorded /// 0055013 // cardiac muscle cell development // inferred from electronic annotation /// 0055013 // cardiac muscle cell development // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005793 // ER-Golgi intermediate compartment // inferred from direct assay /// 0016442 // RNA-induced silencing complex // inferred from electronic annotation /// 0016442 // RNA-induced silencing complex // not recorded /// 0030424 // axon // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0030426 // growth cone // inferred from direct assay 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // not recorded /// 0004525 // ribonuclease III activity // inferred from electronic annotation /// 0004525 // ribonuclease III activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398644_at AI535104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI535104 /DB_XREF=gi:4449239 /DB_XREF=UI-R-C3-sx-e-08-0-UI.s1 /CLONE=UI-R-C3-sx-e-08-0-UI /FEA=EST /CNT=1 /TID=Rn.34740.1 /TIER=ConsEnd /STK=1 /UG=Rn.34740 /UG_TITLE=EST AI535104 0007165 // signal transduction // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1398645_at BE106388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106388 /DB_XREF=gi:8498490 /DB_XREF=UI-R-BT1-asv-d-06-0-UI.s1 /CLONE=UI-R-BT1-asv-d-06-0-UI /FEA=EST /CNT=1 /TID=Rn.50938.1 /TIER=ConsEnd /STK=1 /UG=Rn.50938 /UG_TITLE=EST BE106388 wingless-type MMTV integration site family, member 7A Wnt7a 114850 NM_001100473 /// XM_001073379 /// XM_342723 0000578 // embryonic axis specification // not recorded /// 0007223 // Wnt receptor signaling pathway, calcium modulating pathway // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // inferred from electronic annotation /// 0007269 // neurotransmitter secretion // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008105 // asymmetric protein localization // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0009953 // dorsal/ventral pattern formation // inferred from electronic annotation /// 0009953 // dorsal/ventral pattern formation // not recorded /// 0014719 // satellite cell activation // not recorded /// 0014834 // satellite cell maintenance involved in skeletal muscle regeneration // not recorded /// 0021707 // cerebellar granule cell differentiation // inferred from electronic annotation /// 0021707 // cerebellar granule cell differentiation // not recorded /// 0021846 // cell proliferation in forebrain // not recorded /// 0022009 // central nervous system vasculogenesis // not recorded /// 0030010 // establishment of cell polarity // not recorded /// 0030326 // embryonic limb morphogenesis // not recorded /// 0031133 // regulation of axon diameter // inferred from electronic annotation /// 0031133 // regulation of axon diameter // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0035019 // somatic stem cell maintenance // not recorded /// 0035115 // embryonic forelimb morphogenesis // inferred from electronic annotation /// 0035115 // embryonic forelimb morphogenesis // not recorded /// 0035116 // embryonic hindlimb morphogenesis // inferred from electronic annotation /// 0035116 // embryonic hindlimb morphogenesis // not recorded /// 0035136 // forelimb morphogenesis // not recorded /// 0035137 // hindlimb morphogenesis // not recorded /// 0035567 // non-canonical Wnt receptor signaling pathway // not recorded /// 0042060 // wound healing // inferred from expression pattern /// 0042127 // regulation of cell proliferation // not recorded /// 0042733 // embryonic digit morphogenesis // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0043193 // positive regulation of gene-specific transcription // inferred from electronic annotation /// 0043193 // positive regulation of gene-specific transcription // not recorded /// 0043589 // skin morphogenesis // not recorded /// 0043627 // response to estrogen stimulus // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0046330 // positive regulation of JNK cascade // inferred from mutant phenotype /// 0046590 // embryonic leg morphogenesis // not recorded /// 0048103 // somatic stem cell division // not recorded /// 0048608 // reproductive structure development // not recorded /// 0048705 // skeletal system morphogenesis // not recorded /// 0048864 // stem cell development // not recorded /// 0050768 // negative regulation of neurogenesis // not recorded /// 0050770 // regulation of axonogenesis // not recorded /// 0050808 // synapse organization // inferred from electronic annotation /// 0050808 // synapse organization // not recorded /// 0051216 // cartilage development // not recorded /// 0051965 // positive regulation of synaptogenesis // inferred from electronic annotation /// 0051965 // positive regulation of synaptogenesis // not recorded /// 0060021 // palate development // not recorded /// 0060054 // positive regulation of epithelial cell proliferation involved in wound healing // not recorded /// 0060065 // uterus development // inferred from electronic annotation /// 0060065 // uterus development // not recorded /// 0060070 // canonical Wnt receptor signaling pathway // inferred from mutant phenotype /// 0060070 // canonical Wnt receptor signaling pathway // not recorded /// 0060173 // limb development // not recorded /// 0071560 // cellular response to transforming growth factor beta stimulus // not recorded /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // inferred from electronic annotation /// 0090263 // positive regulation of canonical Wnt receptor signaling pathway // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0031012 // extracellular matrix // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0005109 // frizzled binding // inferred from physical interaction /// 0005109 // frizzled binding // not recorded /// 0005125 // cytokine activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1398646_at AI639247 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639247 /DB_XREF=gi:4700281 /DB_XREF=rx03939s /CLONE=rx03939 /FEA=EST /CNT=1 /TID=Rn.43509.1 /TIER=ConsEnd /STK=1 /UG=Rn.43509 /UG_TITLE=EST, Moderately similar to T17296 hypothetical protein DKFZp434I092.1 (H.sapiens) AI639247 similar to DKFZP434I092 protein RGD1565493 500853 XM_002726902 /// XM_002729803 0004871 // signal transducer activity // inferred from electronic annotation 1398647_at BI288939 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288939 /DB_XREF=gi:14946003 /DB_XREF=UI-R-DK0-cdi-d-05-0-UI.s1 /CLONE=UI-R-DK0-cdi-d-05-0-UI /FEA=EST /CNT=1 /TID=Rn.78968.1 /TIER=ConsEnd /STK=1 /UG=Rn.78968 /UG_TITLE=EST BI288939 1398648_at AI136864 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI136864 /DB_XREF=gi:3637641 /DB_XREF=UI-R-C2p-of-d-06-0-UI.s1 /CLONE=UI-R-C2p-of-d-06-0-UI /FEA=EST /CNT=1 /TID=Rn.27247.1 /TIER=ConsEnd /STK=1 /UG=Rn.27247 /UG_TITLE=EST AI136864 malignant fibrous histiocytoma amplified sequence 1 Mfhas1 306508 NM_001107316 0005515 // protein binding // inferred from electronic annotation 1398649_at AA819827 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819827 /DB_XREF=gi:4228082 /DB_XREF=UI-R-A0-ap-a-06-0-UI.s1 /CLONE=UI-R-A0-ap-a-06-0-UI /FEA=EST /CNT=1 /TID=Rn.16673.1 /TIER=ConsEnd /STK=1 /UG=Rn.16673 /UG_TITLE=EST, Highly similar to KIAA0848 protein (H.sapiens) AA819827 SLIT and NTRK-like family, member 3 Slitrk3 310519 NM_001107683 0007409 // axonogenesis // not recorded 0005515 // protein binding // inferred from electronic annotation 1398650_at AW529438 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW529438 /DB_XREF=gi:7171852 /DB_XREF=UI-R-BT1-akk-c-08-0-UI.s1 /CLONE=UI-R-BT1-akk-c-08-0-UI /FEA=EST /CNT=1 /TID=Rn.67970.1 /TIER=ConsEnd /STK=1 /UG=Rn.67970 /UG_TITLE=EST AW529438 hypothetical protein LOC689589 LOC689589 689589 XM_001071277 1398651_at AI045148 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045148 /DB_XREF=gi:3291967 /DB_XREF=UI-R-C1-kk-a-12-0-UI.s1 /CLONE=UI-R-C1-kk-a-12-0-UI /FEA=EST /CNT=1 /TID=Rn.16128.1 /TIER=ConsEnd /STK=1 /UG=Rn.16128 /UG_TITLE=EST AI045148 1398652_at BF396528 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396528 /DB_XREF=gi:11381502 /DB_XREF=UI-R-BS2-bdz-b-09-0-UI.s1 /CLONE=UI-R-BS2-bdz-b-09-0-UI /FEA=EST /CNT=1 /TID=Rn.45775.2 /TIER=ConsEnd /STK=1 /UG=Rn.45775 /UG_TITLE=ESTs BF396528 inositol monophosphatase domain containing 1 Impad1 312952 NM_001008772 /// XM_001069864 /// XM_575759 0001501 // skeletal system development // not recorded /// 0001958 // endochondral ossification // not recorded /// 0002063 // chondrocyte development // not recorded /// 0009791 // post-embryonic development // not recorded /// 0016311 // dephosphorylation // not recorded /// 0030204 // chondroitin sulfate metabolic process // not recorded /// 0042733 // embryonic digit morphogenesis // not recorded 0005794 // Golgi apparatus // not recorded 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0008254 // 3'-nucleotidase activity // not recorded 1398653_at BF386227 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF386227 /DB_XREF=gi:11371051 /DB_XREF=UI-R-CA1-bbc-b-04-0-UI.s1 /CLONE=UI-R-CA1-bbc-b-04-0-UI /FEA=EST /CNT=1 /TID=Rn.65190.1 /TIER=ConsEnd /STK=1 /UG=Rn.65190 /UG_TITLE=EST BF386227 hypothetical protein LOC683514 LOC683514 683514 NM_001127569 0005515 // protein binding // inferred from electronic annotation 1398654_at AI501129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI501129 /DB_XREF=gi:4398980 /DB_XREF=UI-R-C2p-rs-c-07-0-UI.s1 /CLONE=UI-R-C2p-rs-c-07-0-UI /FEA=EST /CNT=1 /TID=Rn.35272.1 /TIER=ConsEnd /STK=1 /UG=Rn.35272 /UG_TITLE=EST AI501129 1398655_at AA955902 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA955902 /DB_XREF=gi:4238297 /DB_XREF=UI-R-E1-fd-b-03-0-UI.s1 /CLONE=UI-R-E1-fd-b-03-0-UI /FEA=EST /CNT=1 /TID=Rn.9493.1 /TIER=ConsEnd /STK=1 /UG=Rn.9493 /UG_TITLE=EST AA955902 myogenic differentiation 1 Myod1 337868 NM_176079 0000381 // regulation of alternative nuclear mRNA splicing, via spliceosome // not recorded /// 0000381 // regulation of alternative nuclear mRNA splicing, via spliceosome // inferred from sequence or structural similarity /// 0000381 // regulation of alternative nuclear mRNA splicing, via spliceosome // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007517 // muscle organ development // not recorded /// 0007518 // myoblast cell fate determination // not recorded /// 0007518 // myoblast cell fate determination // inferred from sequence or structural similarity /// 0007518 // myoblast cell fate determination // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0007519 // skeletal muscle tissue development // inferred from sequence or structural similarity /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0043415 // positive regulation of skeletal muscle tissue regeneration // not recorded /// 0043415 // positive regulation of skeletal muscle tissue regeneration // inferred from sequence or structural similarity /// 0043415 // positive regulation of skeletal muscle tissue regeneration // inferred from electronic annotation /// 0045445 // myoblast differentiation // not recorded /// 0045445 // myoblast differentiation // inferred from sequence or structural similarity /// 0045445 // myoblast differentiation // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0051146 // striated muscle cell differentiation // not recorded /// 0051146 // striated muscle cell differentiation // inferred from sequence or structural similarity /// 0051146 // striated muscle cell differentiation // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded /// 0030528 // transcription regulator activity // not recorded /// 0030528 // transcription regulator activity // inferred from sequence or structural similarity /// 0030528 // transcription regulator activity // inferred from electronic annotation 1398656_at AI576497 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576497 /DB_XREF=gi:4560873 /DB_XREF=UI-R-G0-us-h-07-0-UI.s1 /CLONE=UI-R-G0-us-h-07-0-UI /FEA=EST /CNT=2 /TID=Rn.38264.1 /TIER=ConsEnd /STK=0 /UG=Rn.38264 /UG_TITLE=ESTs AI576497 1398657_at AI045896 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045896 /DB_XREF=gi:3292715 /DB_XREF=UI-R-C0-jq-e-03-0-UI.s2 /CLONE=UI-R-C0-jq-e-03-0-UI /FEA=EST /CNT=2 /TID=Rn.16341.1 /TIER=ConsEnd /STK=0 /UG=Rn.16341 /UG_TITLE=ESTs, Weakly similar to S06084 Ig kappa chain precursor - rat (R.norvegicus) AI045896 1398658_at AI145762 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI145762 /DB_XREF=gi:3667561 /DB_XREF=UI-R-BT0-py-d-09-0-UI.s1 /CLONE=UI-R-BT0-py-d-09-0-UI /FEA=EST /CNT=1 /TID=Rn.28606.1 /TIER=ConsEnd /STK=0 /UG=Rn.28606 /UG_TITLE=ESTs AI145762 1398659_at AW528611 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW528611 /DB_XREF=gi:7171025 /DB_XREF=UI-R-BO1-ajr-d-02-0-UI.s1 /CLONE=UI-R-BO1-ajr-d-02-0-UI /FEA=EST /CNT=1 /TID=Rn.46938.1 /TIER=ConsEnd /STK=0 /UG=Rn.46938 /UG_TITLE=EST AW528611 von Willebrand factor C domain containing 2 Vwc2 501231 NM_001109312 0010811 // positive regulation of cell-substrate adhesion // not recorded 0005604 // basement membrane // not recorded /// 0005614 // interstitial matrix // not recorded /// 0031012 // extracellular matrix // not recorded 1398660_at BE102693 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE102693 /DB_XREF=gi:8494792 /DB_XREF=UI-R-BT1-aqp-a-06-0-UI.s1 /CLONE=UI-R-BT1-aqp-a-06-0-UI /FEA=EST /CNT=1 /TID=Rn.50377.1 /TIER=ConsEnd /STK=0 /UG=Rn.50377 /UG_TITLE=EST BE102693 solute carrier family 35, member F2 Slc35f2 300713 NM_001106822 1398661_at BG372341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG372341 /DB_XREF=gi:13268878 /DB_XREF=UI-R-CV0-brr-e-10-0-UI.s1 /CLONE=UI-R-CV0-brr-e-10-0-UI /FEA=EST /CNT=1 /TID=Rn.66907.1 /TIER=ConsEnd /STK=0 /UG=Rn.66907 /UG_TITLE=EST BG372341 EGF-like, fibronectin type III and laminin G domains Egflam 365691 NM_001108938 0010811 // positive regulation of cell-substrate adhesion // not recorded /// 0019800 // peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan // not recorded /// 0030198 // extracellular matrix organization // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane // not recorded /// 0005614 // interstitial matrix // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0031012 // extracellular matrix // not recorded /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005539 // glycosaminoglycan binding // not recorded 1398662_at AA901088 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA901088 /DB_XREF=gi:4233587 /DB_XREF=UI-R-A1-do-b-05-0-UI.s1 /CLONE=UI-R-A1-do-b-05-0-UI /FEA=EST /CNT=1 /TID=Rn.15183.1 /TIER=ConsEnd /STK=0 /UG=Rn.15183 /UG_TITLE=EST AA901088 family with sequence similarity 167, member A Fam167a 498533 NM_001109102 1398663_at AI030120 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI030120 /DB_XREF=gi:3247946 /DB_XREF=UI-R-C0-iz-h-07-0-UI.s1 /CLONE=UI-R-C0-iz-h-07-0-UI /FEA=EST /CNT=1 /TID=Rn.21555.1 /TIER=ConsEnd /STK=0 /UG=Rn.21555 /UG_TITLE=ESTs, Weakly similar to OZF RAT ZINC FINGER PROTEIN OZF (R.norvegicus) AI030120 zinc finger protein 61 Zfp61 499094 NM_001017512 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398664_at C06752 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:C06752 /DB_XREF=gi:1503528 /DB_XREF=C06752 /FEA=EST /CNT=1 /TID=Rn.53932.2 /TIER=ConsEnd /STK=0 /UG=Rn.53932 /UG_TITLE=ESTs C06752 GRAM domain containing 3 Gramd3 307288 NM_001014011 1398665_at BF389200 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389200 /DB_XREF=gi:11374030 /DB_XREF=UI-R-BS2-bdl-h-12-0-UI.s1 /CLONE=UI-R-BS2-bdl-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.13811.2 /TIER=ConsEnd /STK=2 /UG=Rn.13811 /UG_TITLE=ESTs, Weakly similar to COLLAGEN ALPHA 1(III) CHAIN (R.norvegicus) BF389200 1398668_at BF290204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF290204 /DB_XREF=gi:11221274 /DB_XREF=EST454795 /CLONE=RGIHT77 /FEA=EST /CNT=2 /TID=Rn.54114.2 /TIER=ConsEnd /STK=0 /UG=Rn.54114 /UG_TITLE=ESTs BF290204 1398669_at AA893160 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893160 /DB_XREF=gi:3020039 /DB_XREF=EST196963 /CLONE=RKIBC91 /FEA=EST /CNT=2 /TID=Rn.32297.1 /TIER=ConsEnd /STK=1 /UG=Rn.32297 /UG_TITLE=ESTs AA893160 hypothetical protein LOC690734 LOC690734 690734 XR_085825 /// XR_086245 1398671_at BG153337 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG153337 /DB_XREF=gi:12665367 /DB_XREF=nag12g07.x1 /CLONE=IMAGE:4176181 /FEA=EST /CNT=1 /TID=Rn.65629.1 /TIER=ConsEnd /STK=1 /UG=Rn.65629 /UG_TITLE=EST BG153337 1398675_at AI639064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639064 /DB_XREF=gi:4700098 /DB_XREF=rx03105s /CLONE=rx03105 /FEA=EST /CNT=1 /TID=Rn.43193.1 /TIER=ConsEnd /STK=1 /UG=Rn.43193 /UG_TITLE=EST AI639064 1398678_at BF565720 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565720 /DB_XREF=gi:11675450 /DB_XREF=UI-R-BO1-ajp-d-04-0-UI.r1 /CLONE=UI-R-BO1-ajp-d-04-0-UI /FEA=EST /CNT=1 /TID=Rn.47096.2 /TIER=ConsEnd /STK=0 /UG=Rn.47096 /UG_TITLE=ESTs BF565720 1398679_at AI639098 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI639098 /DB_XREF=gi:4700132 /DB_XREF=rx01204s /CLONE=rx01204 /FEA=EST /CNT=1 /TID=Rn.43052.1 /TIER=ConsEnd /STK=0 /UG=Rn.43052 /UG_TITLE=EST AI639098 1398683_at BF553446 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF553446 /DB_XREF=gi:11663176 /DB_XREF=UI-R-C2p-od-h-04-0-UI.r1 /CLONE=UI-R-C2p-od-h-04-0-UI /FEA=EST /CNT=1 /TID=Rn.27126.3 /TIER=ConsEnd /STK=0 /UG=Rn.27126 /UG_TITLE=ESTs BF553446 SERTA domain containing 3 Sertad3 499108 NM_001017513 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded 1398684_s_at BF288608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288608 /DB_XREF=gi:11219678 /DB_XREF=EST453199 /CLONE=RGIGV44 /FEA=EST /CNT=1 /TID=Rn.66042.1 /TIER=ConsEnd /STK=0 /UG=Rn.66042 /UG_TITLE=EST BF288608 protease, serine, 37 Prss37 362346 NM_001108625 0006508 // proteolysis // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation 1398685_at BE106310 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE106310 /DB_XREF=gi:8498412 /DB_XREF=UI-R-BO1-asm-d-12-0-UI.s1 /CLONE=UI-R-BO1-asm-d-12-0-UI /FEA=EST /CNT=8 /TID=Rn.44989.1 /TIER=ConsEnd /STK=1 /UG=Rn.44989 /UG_TITLE=ESTs, Highly similar to T47180 hypothetical protein DKFZp434C2316.1 (H.sapiens) BE106310 1398686_at BF288090 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF288090 /DB_XREF=gi:11219160 /DB_XREF=EST452681 /CLONE=RGIGP40 /FEA=EST /CNT=5 /TID=Rn.55182.1 /TIER=ConsEnd /STK=1 /UG=Rn.55182 /UG_TITLE=ESTs BF288090 1398687_at BF283047 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283047 /DB_XREF=gi:11214117 /DB_XREF=EST447638 /CLONE=RGIDW73 /FEA=EST /CNT=4 /TID=Rn.31601.1 /TIER=ConsEnd /STK=1 /UG=Rn.31601 /UG_TITLE=ESTs BF283047 1398688_at BM390176 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM390176 /DB_XREF=gi:18190229 /DB_XREF=UI-R-CN1-cjp-p-04-0-UI.s1 /CLONE=UI-R-CN1-cjp-p-04-0-UI /FEA=EST /CNT=4 /TID=Rn.35509.1 /TIER=ConsEnd /STK=1 /UG=Rn.35509 /UG_TITLE=ESTs BM390176 serine peptidase inhibitor, Kazal type 5 Spink5 361319 NM_001170606 /// XM_001056195 /// XM_002727265 /// XM_002728544 /// XM_341607 0009913 // epidermal cell differentiation // not recorded /// 0010466 // negative regulation of peptidase activity // not recorded /// 0030155 // regulation of cell adhesion // not recorded /// 0045861 // negative regulation of proteolysis // not recorded 0005576 // extracellular region // not recorded /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005829 // cytosol // not recorded /// 0005938 // cell cortex // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibitor activity // not recorded /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // not recorded 1398689_at BE113846 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113846 /DB_XREF=gi:8505951 /DB_XREF=UI-R-CA0-axe-b-04-0-UI.s1 /CLONE=UI-R-CA0-axe-b-04-0-UI /FEA=EST /CNT=4 /TID=Rn.55749.1 /TIER=ConsEnd /STK=1 /UG=Rn.55749 /UG_TITLE=ESTs BE113846 unc-79 homolog (C. elegans) Unc79 314401 XM_001067752 /// XM_002726761 /// XM_002729723 /// XM_234477 1398690_at BF284365 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284365 /DB_XREF=gi:11215435 /DB_XREF=EST448956 /CLONE=RGIEO75 /FEA=EST /CNT=3 /TID=Rn.55264.1 /TIER=ConsEnd /STK=1 /UG=Rn.55264 /UG_TITLE=ESTs BF284365 1398691_at AI408578 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408578 /DB_XREF=gi:4252082 /DB_XREF=EST236868 /CLONE=ROVEQ68 /FEA=EST /CNT=3 /TID=Rn.43610.1 /TIER=ConsEnd /STK=1 /UG=Rn.43610 /UG_TITLE=ESTs AI408578 1398692_at BF287649 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF287649 /DB_XREF=gi:11218719 /DB_XREF=EST452240 /CLONE=RGIGI42 /FEA=EST /CNT=3 /TID=Rn.43526.1 /TIER=ConsEnd /STK=1 /UG=Rn.43526 /UG_TITLE=ESTs BF287649 1398693_at BF289500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF289500 /DB_XREF=gi:11220570 /DB_XREF=EST454091 /CLONE=RGIHH93 /FEA=EST /CNT=3 /TID=Rn.55784.1 /TIER=ConsEnd /STK=1 /UG=Rn.55784 /UG_TITLE=ESTs BF289500 mannosidase, alpha, class 1C, member 1 Man1c1 362625 NM_001108687 0016020 // membrane // inferred from electronic annotation 0004571 // mannosyl-oligosaccharide 1,2-alpha-mannosidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation 1398694_at BF291226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF291226 /DB_XREF=gi:11222296 /DB_XREF=EST455817 /CLONE=RGIIK44 /FEA=EST /CNT=3 /TID=Rn.56058.1 /TIER=ConsEnd /STK=1 /UG=Rn.56058 /UG_TITLE=ESTs BF291226 1398695_at BF389056 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389056 /DB_XREF=gi:11373883 /DB_XREF=UI-R-BS2-bdh-c-10-0-UI.s1 /CLONE=UI-R-BS2-bdh-c-10-0-UI /FEA=EST /CNT=3 /TID=Rn.57897.1 /TIER=ConsEnd /STK=1 /UG=Rn.57897 /UG_TITLE=ESTs BF389056 1398696_at AI178692 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178692 /DB_XREF=gi:3729330 /DB_XREF=EST222373 /CLONE=RPLCU39 /FEA=EST /CNT=3 /TID=Rn.55489.1 /TIER=ConsEnd /STK=1 /UG=Rn.55489 /UG_TITLE=ESTs AI178692 1398697_at BE117321 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117321 /DB_XREF=gi:8509426 /DB_XREF=UI-R-BS1-ayn-d-08-0-UI.s1 /CLONE=UI-R-BS1-ayn-d-08-0-UI /FEA=EST /CNT=2 /TID=Rn.34704.1 /TIER=ConsEnd /STK=1 /UG=Rn.34704 /UG_TITLE=ESTs BE117321 1398698_at BG371721 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG371721 /DB_XREF=gi:13268258 /DB_XREF=UI-R-CV0-brh-d-10-0-UI.s1 /CLONE=UI-R-CV0-brh-d-10-0-UI /FEA=EST /CNT=2 /TID=Rn.66864.1 /TIER=ConsEnd /STK=1 /UG=Rn.66864 /UG_TITLE=ESTs BG371721 1398699_at BE109091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109091 /DB_XREF=gi:8501196 /DB_XREF=UI-R-BS1-azc-h-03-0-UI.s1 /CLONE=UI-R-BS1-azc-h-03-0-UI /FEA=EST /CNT=2 /TID=Rn.51667.1 /TIER=ConsEnd /STK=1 /UG=Rn.51667 /UG_TITLE=ESTs BE109091 1398700_at BE097460 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097460 /DB_XREF=gi:8488391 /DB_XREF=UI-R-BO1-apx-g-09-0-UI.s1 /CLONE=UI-R-BO1-apx-g-09-0-UI /FEA=EST /CNT=2 /TID=Rn.49616.1 /TIER=ConsEnd /STK=1 /UG=Rn.49616 /UG_TITLE=ESTs BE097460 1398701_at AI228104 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228104 /DB_XREF=gi:3811991 /DB_XREF=EST224799 /CLONE=RBRCQ36 /FEA=EST /CNT=2 /TID=Rn.48285.1 /TIER=ConsEnd /STK=1 /UG=Rn.48285 /UG_TITLE=ESTs AI228104 1398702_at BE117785 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE117785 /DB_XREF=gi:8509890 /DB_XREF=UI-R-BS1-azf-h-11-0-UI.s1 /CLONE=UI-R-BS1-azf-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.52894.1 /TIER=ConsEnd /STK=1 /UG=Rn.52894 /UG_TITLE=ESTs BE117785 1398703_at AI178307 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178307 /DB_XREF=gi:3728945 /DB_XREF=EST221975 /CLONE=RPLCO76 /FEA=EST /CNT=2 /TID=Rn.33990.1 /TIER=ConsEnd /STK=1 /UG=Rn.33990 /UG_TITLE=ESTs AI178307 1398704_at BF391251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391251 /DB_XREF=gi:11376094 /DB_XREF=UI-R-CA1-bcv-b-05-0-UI.s1 /CLONE=UI-R-CA1-bcv-b-05-0-UI /FEA=EST /CNT=2 /TID=Rn.57442.1 /TIER=ConsEnd /STK=1 /UG=Rn.57442 /UG_TITLE=ESTs BF391251 1398705_at AI408150 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408150 /DB_XREF=gi:4251654 /DB_XREF=EST236440 /CLONE=ROVEH29 /FEA=EST /CNT=2 /TID=Rn.64901.1 /TIER=ConsEnd /STK=1 /UG=Rn.64901 /UG_TITLE=ESTs AI408150 deltex homolog 4 (Drosophila) Dtx4 293774 NM_001047855 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398706_at BI294633 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294633 /DB_XREF=gi:14957276 /DB_XREF=UI-R-DK0-cem-h-10-0-UI.s1 /CLONE=UI-R-DK0-cem-h-10-0-UI /FEA=EST /CNT=7 /TID=Rn.42996.1 /TIER=ConsEnd /STK=0 /UG=Rn.42996 /UG_TITLE=ESTs BI294633 1398707_at BE108582 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE108582 /DB_XREF=gi:8500687 /DB_XREF=UI-R-CA0-axf-h-10-0-UI.s1 /CLONE=UI-R-CA0-axf-h-10-0-UI /FEA=EST /CNT=6 /TID=Rn.49945.1 /TIER=ConsEnd /STK=0 /UG=Rn.49945 /UG_TITLE=ESTs BE108582 1398708_at BI297590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297590 /DB_XREF=gi:14963114 /DB_XREF=UI-R-CV2-cgy-a-05-0-UI.s1 /CLONE=UI-R-CV2-cgy-a-05-0-UI /FEA=EST /CNT=5 /TID=Rn.66273.1 /TIER=ConsEnd /STK=0 /UG=Rn.66273 /UG_TITLE=ESTs BI297590 Mastermind like 3 (Drosophila) Maml3 310405 NM_001107675 0007219 // Notch signaling pathway // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded 0003713 // transcription coactivator activity // not recorded 1398709_at BI291207 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291207 /DB_XREF=gi:14950530 /DB_XREF=UI-R-CV2-cgm-b-07-0-UI.s1 /CLONE=UI-R-CV2-cgm-b-07-0-UI /FEA=EST /CNT=5 /TID=Rn.66972.1 /TIER=ConsEnd /STK=0 /UG=Rn.66972 /UG_TITLE=ESTs BI291207 1398710_at BF392959 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF392959 /DB_XREF=gi:11377819 /DB_XREF=UI-R-CA0-bfr-c-01-0-UI.s1 /CLONE=UI-R-CA0-bfr-c-01-0-UI /FEA=EST /CNT=5 /TID=Rn.57806.1 /TIER=ConsEnd /STK=0 /UG=Rn.57806 /UG_TITLE=ESTs BF392959 cytochrome P450, family 2, subfamily u, polypeptide 1 Cyp2u1 310848 NM_001024779 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0019825 // oxygen binding // not recorded /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070330 // aromatase activity // inferred from electronic annotation 1398711_at BE097162 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097162 /DB_XREF=gi:8488093 /DB_XREF=UI-R-BO1-apt-h-11-0-UI.s1 /CLONE=UI-R-BO1-apt-h-11-0-UI /FEA=EST /CNT=4 /TID=Rn.47611.1 /TIER=ConsEnd /STK=0 /UG=Rn.47611 /UG_TITLE=ESTs BE097162 1398712_at AA944374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944374 /DB_XREF=gi:3104290 /DB_XREF=EST199873 /CLONE=REMAG16 /FEA=EST /CNT=4 /TID=Rn.22944.1 /TIER=ConsEnd /STK=0 /UG=Rn.22944 /UG_TITLE=ESTs, Highly similar to Y211_HUMAN Hypothetical zinc finger protein KIAA0211 (H.sapiens) AA944374 zinc finger protein 592 Znf592 293038 NM_001106272 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1398713_at BI279821 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279821 /DB_XREF=gi:14928002 /DB_XREF=UI-R-CU0s-cbr-c-11-0-UI.s1 /CLONE=UI-R-CU0s-cbr-c-11-0-UI /FEA=EST /CNT=4 /TID=Rn.54046.1 /TIER=ConsEnd /STK=0 /UG=Rn.54046 /UG_TITLE=ESTs BI279821 1398714_at BF403400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403400 /DB_XREF=gi:11391337 /DB_XREF=UI-R-CA1-biy-k-24-0-UI.s1 /CLONE=UI-R-CA1-biy-k-24-0-UI /FEA=EST /CNT=4 /TID=Rn.59825.1 /TIER=ConsEnd /STK=0 /UG=Rn.59825 /UG_TITLE=ESTs, Highly similar to USF2 RAT UPSTREAM STIMULATORY FACTOR 2 (R.norvegicus) BF403400 upstream transcription factor 2, c-fos interacting Usf2 81817 NM_031139 0000432 // positive regulation of transcription from RNA polymerase II promoter by glucose // inferred from electronic annotation /// 0000432 // positive regulation of transcription from RNA polymerase II promoter by glucose // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0007595 // lactation // inferred from electronic annotation /// 0007595 // lactation // not recorded /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0055088 // lipid homeostasis // inferred from electronic annotation /// 0055088 // lipid homeostasis // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0016563 // transcription activator activity // not recorded /// 0016563 // transcription activator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from mutant phenotype /// 0042803 // protein homodimerization activity // not recorded /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0043425 // bHLH transcription factor binding // inferred from electronic annotation /// 0043425 // bHLH transcription factor binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from mutant phenotype /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 1398715_at BF563806 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF563806 /DB_XREF=gi:11673536 /DB_XREF=UI-R-BT1-akt-b-03-0-UI.r1 /CLONE=UI-R-BT1-akt-b-03-0-UI /FEA=EST /CNT=3 /TID=Rn.46513.1 /TIER=ConsEnd /STK=0 /UG=Rn.46513 /UG_TITLE=ESTs BF563806 N-myristoyltransferase 2 Nmt2 291318 NM_207590 0006499 // N-terminal protein myristoylation // inferred from electronic annotation /// 0006499 // N-terminal protein myristoylation // traceable author statement /// 0018008 // N-terminal peptidyl-glycine N-myristoylation // traceable author statement 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // traceable author statement /// 0005794 // Golgi apparatus // not recorded 0004379 // glycylpeptide N-tetradecanoyltransferase activity // inferred from electronic annotation /// 0004379 // glycylpeptide N-tetradecanoyltransferase activity // traceable author statement /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1398716_at BG670822 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670822 /DB_XREF=gi:13892921 /DB_XREF=DRNBGB07 /CLONE=DRNBGB07 /FEA=EST /CNT=3 /TID=Rn.59778.1 /TIER=ConsEnd /STK=0 /UG=Rn.59778 /UG_TITLE=ESTs BG670822 1398717_at BF405493 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405493 /DB_XREF=gi:11393468 /DB_XREF=UI-R-CA1-biu-a-08-0-UI.s1 /CLONE=UI-R-CA1-biu-a-08-0-UI /FEA=EST /CNT=3 /TID=Rn.58461.1 /TIER=ConsEnd /STK=0 /UG=Rn.58461 /UG_TITLE=ESTs BF405493 1398718_at AW522657 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW522657 /DB_XREF=gi:7165042 /DB_XREF=UI-R-BO0-ahl-c-06-0-UI.s1 /CLONE=UI-R-BO0-ahl-c-06-0-UI /FEA=EST /CNT=3 /TID=Rn.45448.1 /TIER=ConsEnd /STK=0 /UG=Rn.45448 /UG_TITLE=ESTs AW522657 1398719_at AA819458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819458 /DB_XREF=gi:4228595 /DB_XREF=UI-R-A0-bk-c-04-0-UI.s1 /CLONE=UI-R-A0-bk-c-04-0-UI /FEA=EST /CNT=3 /TID=Rn.34240.1 /TIER=ConsEnd /STK=0 /UG=Rn.34240 /UG_TITLE=ESTs AA819458 chromodomain protein, Y chromosome-like 2 Cdyl2 292044 NM_001106189 0003824 // catalytic activity // inferred from electronic annotation 1398720_at BI289222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI289222 /DB_XREF=gi:14946575 /DB_XREF=UI-R-DK0-cfj-d-01-0-UI.s1 /CLONE=UI-R-DK0-cfj-d-01-0-UI /FEA=EST /CNT=3 /TID=Rn.45984.1 /TIER=ConsEnd /STK=0 /UG=Rn.45984 /UG_TITLE=ESTs, Weakly similar to ENDOTHELIN-CONVERTING ENZYME 1 (R.norvegicus) BI289222 Kell blood group, metallo-endopeptidase Kel 297025 NM_001191611 /// XM_001068791 /// XM_216130 0006508 // proteolysis // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // not recorded /// 0005515 // protein binding // not recorded 1398721_at BF399295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399295 /DB_XREF=gi:11384299 /DB_XREF=UI-R-CA1-biz-n-13-0-UI.s1 /CLONE=UI-R-CA1-biz-n-13-0-UI /FEA=EST /CNT=3 /TID=Rn.45600.1 /TIER=ConsEnd /STK=0 /UG=Rn.45600 /UG_TITLE=ESTs, Weakly similar to T09013 RING finger protein Fxy - mouse (M.musculus) BF399295 fibronectin type III and SPRY domain containing 1 Fsd1 301506 NM_001106918 0005622 // intracellular // inferred from electronic annotation 1398722_at BF412971 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF412971 /DB_XREF=gi:11400960 /DB_XREF=UI-R-CA0-boc-h-12-0-UI.s1 /CLONE=UI-R-CA0-boc-h-12-0-UI /FEA=EST /CNT=3 /TID=Rn.64352.1 /TIER=ConsEnd /STK=0 /UG=Rn.64352 /UG_TITLE=ESTs BF412971 1398723_at BF565515 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF565515 /DB_XREF=gi:11675293 /DB_XREF=UI-R-BT1-akm-g-06-0-UI.r1 /CLONE=UI-R-BT1-akm-g-06-0-UI /FEA=EST /CNT=2 /TID=Rn.82274.1 /TIER=ConsEnd /STK=0 /UG=Rn.82274 /UG_TITLE=ESTs BF565515 1398724_at BE112211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112211 /DB_XREF=gi:8504316 /DB_XREF=UI-R-BJ1-avl-a-07-0-UI.s1 /CLONE=UI-R-BJ1-avl-a-07-0-UI /FEA=EST /CNT=2 /TID=Rn.49111.1 /TIER=ConsEnd /STK=0 /UG=Rn.49111 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) BE112211 GLIS family zinc finger 2 Glis2 302946 NM_001106978 0016481 // negative regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // not recorded 1398725_at BI275478 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275478 /DB_XREF=gi:14887374 /DB_XREF=UI-R-CX0-bww-h-11-0-UI.s1 /CLONE=UI-R-CX0-bww-h-11-0-UI /FEA=EST /CNT=2 /TID=Rn.80098.1 /TIER=ConsEnd /STK=0 /UG=Rn.80098 /UG_TITLE=ESTs, Highly similar to HXK1 RAT HEXOKINASE, TYPE I (R.norvegicus) BI275478 1398726_at AI502051 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI502051 /DB_XREF=gi:4399902 /DB_XREF=UI-R-C1-jv-f-07-0-UI.s1 /CLONE=UI-R-C1-jv-f-07-0-UI /FEA=EST /CNT=2 /TID=Rn.15772.1 /TIER=ConsEnd /STK=0 /UG=Rn.15772 /UG_TITLE=ESTs AI502051 Activating signal cointegrator 1 complex subunit 3-like 1 Ascc3l1 296126 NM_001037766 0008380 // RNA splicing // inferred from electronic annotation 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005682 // U5 snRNP // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation 1398727_at BF398091 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398091 /DB_XREF=gi:11383076 /DB_XREF=UI-R-BS2-bem-c-05-0-UI.s1 /CLONE=UI-R-BS2-bem-c-05-0-UI /FEA=EST /CNT=2 /TID=Rn.32838.1 /TIER=ConsEnd /STK=0 /UG=Rn.32838 /UG_TITLE=ESTs BF398091 1398728_at BI296458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296458 /DB_XREF=gi:14960900 /DB_XREF=UI-R-CV2-cgr-d-11-0-UI.s1 /CLONE=UI-R-CV2-cgr-d-11-0-UI /FEA=EST /CNT=2 /TID=Rn.79819.1 /TIER=ConsEnd /STK=0 /UG=Rn.79819 /UG_TITLE=ESTs BI296458 1398729_s_at AW525946 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525946 /DB_XREF=gi:7168331 /DB_XREF=UI-R-BO1-aiw-e-10-0-UI.s1 /CLONE=UI-R-BO1-aiw-e-10-0-UI /FEA=EST /CNT=2 /TID=Rn.46039.1 /TIER=ConsEnd /STK=0 /UG=Rn.46039 /UG_TITLE=ESTs AW525946 similar to nucleolar protein with MIF4G domain 1 LOC682058 682058 XM_001059617 0016070 // RNA metabolic process // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1398730_at BF401468 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401468 /DB_XREF=gi:11389443 /DB_XREF=UI-R-CA0-bgt-h-12-0-UI.s1 /CLONE=UI-R-CA0-bgt-h-12-0-UI /FEA=EST /CNT=2 /TID=Rn.59805.1 /TIER=ConsEnd /STK=0 /UG=Rn.59805 /UG_TITLE=ESTs, Highly similar to T12455 hypothetical protein DKFZp564H2023.1 (H.sapiens) BF401468 1398731_at BF410569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410569 /DB_XREF=gi:11398544 /DB_XREF=UI-R-CA0-bma-c-08-0-UI.s1 /CLONE=UI-R-CA0-bma-c-08-0-UI /FEA=EST /CNT=2 /TID=Rn.61742.1 /TIER=ConsEnd /STK=0 /UG=Rn.61742 /UG_TITLE=ESTs BF410569 1398732_at BF553297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF553297 /DB_XREF=gi:11663075 /DB_XREF=UI-R-C2p-nu-a-05-0-UI.r1 /CLONE=UI-R-C2p-nu-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.32410.1 /TIER=ConsEnd /STK=0 /UG=Rn.32410 /UG_TITLE=ESTs BF553297 1398733_at BE120386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120386 /DB_XREF=gi:8512491 /DB_XREF=UI-R-CA0-baq-g-10-0-UI.s1 /CLONE=UI-R-CA0-baq-g-10-0-UI /FEA=EST /CNT=5 /TID=Rn.53548.1 /TIER=ConsEnd /STK=5 /UG=Rn.53548 /UG_TITLE=ESTs BE120386 1398734_at BE120772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE120772 /DB_XREF=gi:8512841 /DB_XREF=UI-R-CA0-bay-h-12-0-UI.s1 /CLONE=UI-R-CA0-bay-h-12-0-UI /FEA=EST /CNT=4 /TID=Rn.53651.1 /TIER=ConsEnd /STK=4 /UG=Rn.53651 /UG_TITLE=ESTs BE120772 1398735_at BF559001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559001 /DB_XREF=gi:11668731 /DB_XREF=UI-R-A0-bc-e-05-0-UI.r1 /CLONE=UI-R-A0-bc-e-05-0-UI /FEA=EST /CNT=4 /TID=Rn.35560.1 /TIER=ConsEnd /STK=3 /UG=Rn.35560 /UG_TITLE=ESTs BF559001 1398736_at BF399976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399976 /DB_XREF=gi:11384987 /DB_XREF=UI-R-CA1-bia-b-12-0-UI.s1 /CLONE=UI-R-CA1-bia-b-12-0-UI /FEA=EST /CNT=3 /TID=Rn.59515.1 /TIER=ConsEnd /STK=3 /UG=Rn.59515 /UG_TITLE=ESTs BF399976 1398737_at BF403341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF403341 /DB_XREF=gi:11391316 /DB_XREF=UI-R-CA1-biy-i-02-0-UI.s1 /CLONE=UI-R-CA1-biy-i-02-0-UI /FEA=EST /CNT=3 /TID=Rn.59216.1 /TIER=ConsEnd /STK=3 /UG=Rn.59216 /UG_TITLE=ESTs BF403341 1398738_at BF391477 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF391477 /DB_XREF=gi:11376371 /DB_XREF=UI-R-CA1-bcs-d-03-0-UI.s1 /CLONE=UI-R-CA1-bcs-d-03-0-UI /FEA=EST /CNT=3 /TID=Rn.57529.1 /TIER=ConsEnd /STK=3 /UG=Rn.57529 /UG_TITLE=ESTs BF391477 1398739_at BF400127 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF400127 /DB_XREF=gi:11385138 /DB_XREF=UI-R-CA1-bjc-o-17-0-UI.s1 /CLONE=UI-R-CA1-bjc-o-17-0-UI /FEA=EST /CNT=3 /TID=Rn.59189.1 /TIER=ConsEnd /STK=3 /UG=Rn.59189 /UG_TITLE=ESTs BF400127 1398740_at BF399546 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399546 /DB_XREF=gi:11384554 /DB_XREF=UI-R-CA1-bjb-n-06-0-UI.s1 /CLONE=UI-R-CA1-bjb-n-06-0-UI /FEA=EST /CNT=3 /TID=Rn.59405.1 /TIER=ConsEnd /STK=3 /UG=Rn.59405 /UG_TITLE=ESTs BF399546 1398741_at BE096677 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE096677 /DB_XREF=gi:8487567 /DB_XREF=UI-R-BU0-api-e-09-0-UI.s1 /CLONE=UI-R-BU0-api-e-09-0-UI /FEA=EST /CNT=3 /TID=Rn.49208.1 /TIER=ConsEnd /STK=2 /UG=Rn.49208 /UG_TITLE=ESTs BE096677 1398742_at AI555222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI555222 /DB_XREF=gi:4487585 /DB_XREF=UI-R-C2p-qu-e-11-0-UI.s1 /CLONE=UI-R-C2p-qu-e-11-0-UI /FEA=EST /CNT=3 /TID=Rn.38570.1 /TIER=ConsEnd /STK=2 /UG=Rn.38570 /UG_TITLE=ESTs AI555222 1398743_at AI137489 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI137489 /DB_XREF=gi:3638266 /DB_XREF=UI-R-C2p-ol-g-12-0-UI.s1 /CLONE=UI-R-C2p-ol-g-12-0-UI /FEA=EST /CNT=3 /TID=Rn.27438.1 /TIER=ConsEnd /STK=2 /UG=Rn.27438 /UG_TITLE=ESTs AI137489 1398744_at AW253984 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253984 /DB_XREF=gi:6597575 /DB_XREF=UI-R-BJ0-aed-f-11-0-UI.s1 /CLONE=UI-R-BJ0-aed-f-11-0-UI /FEA=EST /CNT=3 /TID=Rn.44784.1 /TIER=ConsEnd /STK=2 /UG=Rn.44784 /UG_TITLE=ESTs AW253984 1398745_at BM389610 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389610 /DB_XREF=gi:18189663 /DB_XREF=UI-R-CN1-cjo-c-11-0-UI.s1 /CLONE=UI-R-CN1-cjo-c-11-0-UI /FEA=EST /CNT=2 /TID=Rn.81484.1 /TIER=ConsEnd /STK=2 /UG=Rn.81484 /UG_TITLE=ESTs BM389610 1398746_at BF399464 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF399464 /DB_XREF=gi:11384472 /DB_XREF=UI-R-CA1-bjb-n-11-0-UI.s1 /CLONE=UI-R-CA1-bjb-n-11-0-UI /FEA=EST /CNT=2 /TID=Rn.59289.1 /TIER=ConsEnd /STK=2 /UG=Rn.59289 /UG_TITLE=ESTs, Weakly similar to S56598 hypothetical 22.2K protein (rimI-prfC intergenic region) - Escherichia coli (E.coli) BF399464 N-acetylneuraminic acid phosphatase Nanp 311530 NM_001009409 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0046380 // N-acetylneuraminate biosynthetic process // inferred from direct assay /// 0046380 // N-acetylneuraminate biosynthetic process // not recorded /// 0046380 // N-acetylneuraminate biosynthetic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008967 // phosphoglycolate phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0050124 // N-acylneuraminate-9-phosphatase activity // inferred from direct assay /// 0050124 // N-acylneuraminate-9-phosphatase activity // not recorded /// 0050124 // N-acylneuraminate-9-phosphatase activity // inferred from electronic annotation 1398747_at AI071171 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI071171 /DB_XREF=gi:3397386 /DB_XREF=UI-R-C2-my-c-04-0-UI.s1 /CLONE=UI-R-C2-my-c-04-0-UI /FEA=EST /CNT=2 /TID=Rn.33472.1 /TIER=ConsEnd /STK=2 /UG=Rn.33472 /UG_TITLE=ESTs AI071171 1398748_at BF410456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410456 /DB_XREF=gi:11398431 /DB_XREF=UI-R-CA1-bjx-f-12-0-UI.s1 /CLONE=UI-R-CA1-bjx-f-12-0-UI /FEA=EST /CNT=2 /TID=Rn.61712.1 /TIER=ConsEnd /STK=2 /UG=Rn.61712 /UG_TITLE=ESTs BF410456 1398749_at NM_022510 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022510.1 /DB_XREF=gi:11968085 /GEN=Rpl4 /FEA=FLmRNA /CNT=93 /TID=Rn.1133.1 /TIER=FL+Stack /STK=66 /UG=Rn.1133 /LL=64302 /DEF=Rattus norvegicus ribosomal protein L4 (Rpl4), mRNA. /PROD=ribosomal protein L4 /FL=gb:NM_022510.1 NM_022510 ribosomal protein L4 Rpl4 64302 NM_022510 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1398750_at NM_022399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022399.1 /DB_XREF=gi:11693171 /GEN=Calr /FEA=FLmRNA /CNT=84 /TID=Rn.974.1 /TIER=FL+Stack /STK=60 /UG=Rn.974 /LL=64202 /DEF=Rattus norvegicus calreticulin (Calr), mRNA. /PROD=calreticulin /FL=gb:NM_022399.1 gb:D78308.1 NM_022399 calreticulin Calr 64202 NM_022399 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006457 // protein folding // traceable author statement /// 0006457 // protein folding // inferred from electronic annotation /// 0006611 // protein export from nucleus // inferred from electronic annotation /// 0006611 // protein export from nucleus // not recorded /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0007283 // spermatogenesis // inferred from expression pattern /// 0008284 // positive regulation of cell proliferation // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // not recorded /// 0010033 // response to organic substance // inferred from expression pattern /// 0017148 // negative regulation of translation // inferred from direct assay /// 0030866 // cortical actin cytoskeleton organization // inferred from electronic annotation /// 0030866 // cortical actin cytoskeleton organization // not recorded /// 0032355 // response to estradiol stimulus // inferred from expression pattern /// 0033144 // negative regulation of steroid hormone receptor signaling pathway // inferred from electronic annotation /// 0033144 // negative regulation of steroid hormone receptor signaling pathway // not recorded /// 0033574 // response to testosterone stimulus // inferred from expression pattern /// 0040020 // regulation of meiosis // inferred from electronic annotation /// 0040020 // regulation of meiosis // not recorded /// 0042493 // response to drug // inferred from expression pattern /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0045740 // positive regulation of DNA replication // inferred from electronic annotation /// 0045740 // positive regulation of DNA replication // not recorded /// 0045787 // positive regulation of cell cycle // inferred from electronic annotation /// 0045787 // positive regulation of cell cycle // not recorded /// 0048387 // negative regulation of retinoic acid receptor signaling pathway // inferred from electronic annotation /// 0048387 // negative regulation of retinoic acid receptor signaling pathway // not recorded /// 0055007 // cardiac muscle cell differentiation // inferred from expression pattern /// 0071285 // cellular response to lithium ion // inferred from expression pattern /// 0071310 // cellular response to organic substance // inferred from expression pattern 0001669 // acrosomal vesicle // inferred from direct assay /// 0005615 // extracellular space // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0005615 // extracellular space // inferred from electronic annotation /// 0005625 // soluble fraction // inferred from direct assay /// 0005625 // soluble fraction // traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // not recorded /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // inferred from expression pattern /// 0031012 // extracellular matrix // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from expression pattern /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003729 // mRNA binding // inferred from direct assay /// 0003729 // mRNA binding // not recorded /// 0003729 // mRNA binding // inferred from electronic annotation /// 0005178 // integrin binding // inferred from electronic annotation /// 0005178 // integrin binding // not recorded /// 0005506 // iron ion binding // inferred from direct assay /// 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // not recorded /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0042277 // peptide binding // inferred from direct assay /// 0042562 // hormone binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // not recorded /// 0051082 // unfolded protein binding // inferred from electronic annotation 1398751_at NM_031570 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031570.1 /DB_XREF=gi:13928773 /GEN=Rps7 /FEA=FLmRNA /CNT=82 /TID=Rn.2050.1 /TIER=FL+Stack /STK=58 /UG=Rn.2050 /LL=29258 /DEF=Rattus norvegicus ribosomal protein S7 (Rps7), mRNA. /PROD=ribosomal protein S7 /FL=gb:NM_031570.1 NM_031570 ribosomal protein S7 Rps7 29258 NM_031570 0006364 // rRNA processing // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0042274 // ribosomal small subunit biogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398752_at NM_133297 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133297.1 /DB_XREF=gi:18959231 /GEN=Sep15-pending /FEA=FLmRNA /CNT=72 /TID=Rn.1124.1 /TIER=FL+Stack /STK=58 /UG=Rn.1124 /DEF=Rattus norvegicus 15-kDa selenoprotein (Sep15-pending), mRNA. /PROD=15-kDa selenoprotein /FL=gb:NM_133297.1 gb:AF390544.1 NM_133297 selenoprotein Sep15 113922 NM_133297 0035092 // sperm chromatin condensation // inferred from mutant phenotype /// 0051084 // 'de novo' posttranslational protein folding // traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // not recorded /// 0005788 // endoplasmic reticulum lumen // inferred from sequence or structural similarity /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008379 // thioredoxin peroxidase activity // inferred from direct assay /// 0008430 // selenium binding // inferred from direct assay /// 0008430 // selenium binding // not recorded /// 0008430 // selenium binding // inferred from electronic annotation 1398753_at NM_031000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031000.1 /DB_XREF=gi:13591893 /GEN=Akr1a1 /FEA=FLmRNA /CNT=64 /TID=Rn.835.1 /TIER=FL+Stack /STK=50 /UG=Rn.835 /LL=78959 /DEF=Rattus norvegicus aldo-keto reductase family 1, member A1 (aldehyde reductase) (Akr1a1), mRNA. /PROD=aldo-keto reductase family 1, member A1(aldehyde reductase) /FL=gb:NM_031000.1 gb:D10854.1 NM_031000 aldo-keto reductase family 1, member A1 (aldehyde reductase) Akr1a1 78959 NM_031000 0019853 // L-ascorbic acid biosynthetic process // inferred from electronic annotation /// 0019853 // L-ascorbic acid biosynthetic process // not recorded /// 0042840 // D-glucuronate catabolic process // inferred from electronic annotation /// 0042840 // D-glucuronate catabolic process // not recorded /// 0046185 // aldehyde catabolic process // inferred from electronic annotation /// 0046185 // aldehyde catabolic process // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded 0004032 // aldehyde reductase activity // inferred from electronic annotation /// 0004032 // aldehyde reductase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008106 // alcohol dehydrogenase (NADP+) activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0047939 // L-glucuronate reductase activity // inferred from electronic annotation /// 0047939 // L-glucuronate reductase activity // not recorded 1398754_at NM_031687 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031687.1 /DB_XREF=gi:13928951 /GEN=Uba52 /FEA=FLmRNA /CNT=70 /TID=Rn.4300.1 /TIER=FL+Stack /STK=47 /UG=Rn.4300 /LL=64156 /DEF=Rattus norvegicus ubiquitin A-52 residue ribosomal protein fusion product 1 (Uba52), mRNA. /PROD=ubiquitin A-52 residue ribosomal protein fusionproduct 1 /FL=gb:NM_031687.1 NM_031687 ubiquitin A-52 residue ribosomal protein fusion product 1 Uba52 64156 NM_031687 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0005622 // intracellular // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1398755_at NM_130823 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130823.1 /DB_XREF=gi:18677756 /GEN=Atp6l /FEA=FLmRNA /CNT=64 /TID=Rn.1869.1 /TIER=FL+Stack /STK=42 /UG=Rn.1869 /LL=170667 /DEF=Rattus norvegicus ATPase, H+ transporting, lysosomal (vacuolar proton pump) 16 kDa (Atp6l), mRNA. /PROD=ATPase, H+ transporting, lysosomal (vacuolarproton pump) 16 kDa /FL=gb:D10874.1 gb:NM_130823.1 NM_130823 ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c Atp6v0c 170667 NM_130823 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation 0005764 // lysosome // inferred from direct assay /// 0005773 // vacuole // inferred from electronic annotation /// 0005774 // vacuolar membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0033177 // proton-transporting two-sector ATPase complex, proton-transporting domain // inferred from electronic annotation /// 0033179 // proton-transporting V-type ATPase, V0 domain // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0042625 // ATPase activity, coupled to transmembrane movement of ions // non-traceable author statement 1398756_at J04943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J04943.1 /DB_XREF=gi:203077 /FEA=FLmRNA /CNT=22 /TID=Rn.54537.2 /TIER=FL+Stack /STK=11 /UG=Rn.54537 /LL=25498 /UG_GENE=Npm1 /UG_TITLE=Nucleoplasmin-related protein (Nuclear protein B23 /DEF=Rat nucleolar protein B23.2 mRNA, complete cds, clone JH2. /FL=gb:J04943.1 J04943 nucleophosmin (nucleolar phosphoprotein B23, numatrin) Npm1 25498 NM_012992 0000055 // ribosomal large subunit export from nucleus // not recorded /// 0000056 // ribosomal small subunit export from nucleus // not recorded /// 0006334 // nucleosome assembly // not recorded /// 0006407 // rRNA export from nucleus // not recorded /// 0006884 // cell volume homeostasis // not recorded /// 0006913 // nucleocytoplasmic transport // not recorded /// 0006950 // response to stress // not recorded /// 0007098 // centrosome cycle // not recorded /// 0007098 // centrosome cycle // inferred from sequence or structural similarity /// 0007569 // cell aging // not recorded /// 0007569 // cell aging // inferred from sequence or structural similarity /// 0008104 // protein localization // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0010824 // regulation of centrosome duplication // not recorded /// 0010825 // positive regulation of centrosome duplication // not recorded /// 0010826 // negative regulation of centrosome duplication // not recorded /// 0016049 // cell growth // not recorded /// 0031328 // positive regulation of cellular biosynthetic process // not recorded /// 0042273 // ribosomal large subunit biogenesis // not recorded /// 0042274 // ribosomal small subunit biogenesis // not recorded /// 0043085 // positive regulation of catalytic activity // inferred from direct assay /// 0043516 // regulation of DNA damage response, signal transduction by p53 class mediator // not recorded /// 0045740 // positive regulation of DNA replication // inferred from direct assay /// 0045767 // regulation of anti-apoptosis // inferred from mutant phenotype /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0048025 // negative regulation of nuclear mRNA splicing, via spliceosome // not recorded /// 0051054 // positive regulation of DNA metabolic process // inferred from direct assay /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051259 // protein oligomerization // not recorded /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051726 // regulation of cell cycle // not recorded 0001652 // granular component // not recorded /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005829 // cytosol // not recorded /// 0015934 // large ribosomal subunit // not recorded /// 0015935 // small ribosomal subunit // not recorded /// 0016607 // nuclear speck // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0031616 // spindle pole centrosome // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from physical interaction /// 0019843 // rRNA binding // not recorded /// 0019899 // enzyme binding // inferred from direct assay /// 0019899 // enzyme binding // inferred from physical interaction /// 0030957 // Tat protein binding // not recorded /// 0042393 // histone binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043023 // ribosomal large subunit binding // not recorded /// 0043024 // ribosomal small subunit binding // not recorded /// 0046982 // protein heterodimerization activity // not recorded /// 0051059 // NF-kappaB binding // not recorded /// 0051059 // NF-kappaB binding // inferred from sequence or structural similarity /// 0051082 // unfolded protein binding // not recorded /// 0051082 // unfolded protein binding // inferred from sequence or structural similarity 1398757_at NM_012992 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012992.1 /DB_XREF=gi:7242159 /GEN=Npm1 /FEA=FLmRNA /CNT=67 /TID=Rn.54537.1 /TIER=FL+Stack /STK=41 /UG=Rn.54537 /LL=25498 /DEF=Rattus norvegicus Nucleoplasmin-related protein (Nuclear protein B23 (Npm1), mRNA. /PROD=nucleoplasmin-related protein (Nuclear proteinB23 /FL=gb:J03969.1 gb:NM_012992.1 NM_012992 nucleophosmin (nucleolar phosphoprotein B23, numatrin) Npm1 25498 NM_012992 0000055 // ribosomal large subunit export from nucleus // not recorded /// 0000056 // ribosomal small subunit export from nucleus // not recorded /// 0006334 // nucleosome assembly // not recorded /// 0006407 // rRNA export from nucleus // not recorded /// 0006884 // cell volume homeostasis // not recorded /// 0006913 // nucleocytoplasmic transport // not recorded /// 0006950 // response to stress // not recorded /// 0007098 // centrosome cycle // not recorded /// 0007098 // centrosome cycle // inferred from sequence or structural similarity /// 0007569 // cell aging // not recorded /// 0007569 // cell aging // inferred from sequence or structural similarity /// 0008104 // protein localization // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0010824 // regulation of centrosome duplication // not recorded /// 0010825 // positive regulation of centrosome duplication // not recorded /// 0010826 // negative regulation of centrosome duplication // not recorded /// 0016049 // cell growth // not recorded /// 0031328 // positive regulation of cellular biosynthetic process // not recorded /// 0042273 // ribosomal large subunit biogenesis // not recorded /// 0042274 // ribosomal small subunit biogenesis // not recorded /// 0043085 // positive regulation of catalytic activity // inferred from direct assay /// 0043516 // regulation of DNA damage response, signal transduction by p53 class mediator // not recorded /// 0045740 // positive regulation of DNA replication // inferred from direct assay /// 0045767 // regulation of anti-apoptosis // inferred from mutant phenotype /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0048025 // negative regulation of nuclear mRNA splicing, via spliceosome // not recorded /// 0051054 // positive regulation of DNA metabolic process // inferred from direct assay /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051259 // protein oligomerization // not recorded /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051726 // regulation of cell cycle // not recorded 0001652 // granular component // not recorded /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005829 // cytosol // not recorded /// 0015934 // large ribosomal subunit // not recorded /// 0015935 // small ribosomal subunit // not recorded /// 0016607 // nuclear speck // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0031616 // spindle pole centrosome // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from physical interaction /// 0019843 // rRNA binding // not recorded /// 0019899 // enzyme binding // inferred from direct assay /// 0019899 // enzyme binding // inferred from physical interaction /// 0030957 // Tat protein binding // not recorded /// 0042393 // histone binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043023 // ribosomal large subunit binding // not recorded /// 0043024 // ribosomal small subunit binding // not recorded /// 0046982 // protein heterodimerization activity // not recorded /// 0051059 // NF-kappaB binding // not recorded /// 0051059 // NF-kappaB binding // inferred from sequence or structural similarity /// 0051082 // unfolded protein binding // not recorded /// 0051082 // unfolded protein binding // inferred from sequence or structural similarity 1398758_at NM_024151 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024151.1 /DB_XREF=gi:13162342 /GEN=Arf4 /FEA=FLmRNA /CNT=68 /TID=Rn.35935.1 /TIER=FL+Stack /STK=40 /UG=Rn.35935 /LL=79120 /DEF=Rattus norvegicus ADP-ribosylation factor 4 (Arf4), mRNA. /PROD=ADP-ribosylation factor 4 /FL=gb:NM_024151.1 gb:L12383.1 NM_024151 ADP-ribosylation factor 4 Arf4 79120 NM_024151 0006810 // transport // inferred from electronic annotation /// 0007173 // epidermal growth factor receptor signaling pathway // inferred from direct assay /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0048678 // response to axon injury // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1398759_at NM_013043 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013043.1 /DB_XREF=gi:6981647 /GEN=Tgfb1i4 /FEA=FLmRNA /CNT=51 /TID=Rn.3545.1 /TIER=FL+Stack /STK=37 /UG=Rn.3545 /LL=25564 /DEF=Rattus norvegicus Transforming growth factor beta stimulated clone 22 (Tgfb1i4), mRNA. /PROD=transforming growth factor beta stimulated clone22 /FL=gb:NM_013043.1 gb:L25785.1 NM_013043 TSC22 domain family, member 1 Tsc22d1 498545 NM_001109912 /// NM_013043 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation 1398760_at NM_021264 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_021264.1 /DB_XREF=gi:10863990 /GEN=Rpl35 /FEA=FLmRNA /CNT=53 /TID=Rn.2812.1 /TIER=FL+Stack /STK=36 /UG=Rn.2812 /LL=57809 /DEF=Rattus norvegicus ribosomal protein L35a (Rpl35), mRNA. /PROD=ribosomal protein L35a /FL=gb:NM_021264.1 NM_021264 ribosomal protein L35a-like /// ribosomal protein L35a-like /// ribosomal protein L35a-like /// ribosomal protein L35a LOC100359498 /// LOC100362049 /// LOC100365443 /// Rpl35a 100359498 /// 100362049 /// 100365443 /// 57809 NM_021264 /// XM_002724725 /// XM_002724726 /// XM_002724727 /// XM_002726755 /// XM_002727894 /// XM_002727895 /// XM_002727896 /// XM_002729638 0006364 // rRNA processing // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0042273 // ribosomal large subunit biogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000049 // tRNA binding // traceable author statement /// 0000049 // tRNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398761_at NM_031099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031099.1 /DB_XREF=gi:13592050 /GEN=Rpl5 /FEA=FLmRNA /CNT=56 /TID=Rn.2331.1 /TIER=FL+Stack /STK=34 /UG=Rn.2331 /LL=81763 /DEF=Rattus norvegicus ribosomal protein L5 (Rpl5), mRNA. /PROD=ribosomal protein L5 /FL=gb:M17419.1 gb:NM_031099.1 NM_031099 ribosomal protein L5 Rpl5 81763 NM_031099 0006412 // translation // inferred from electronic annotation /// 0010922 // positive regulation of phosphatase activity // inferred from direct assay /// 0071241 // cellular response to inorganic substance // inferred from expression pattern 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005840 // ribosome // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0017101 // aminoacyl-tRNA synthetase multienzyme complex // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008097 // 5S rRNA binding // traceable author statement /// 0008097 // 5S rRNA binding // inferred from electronic annotation /// 0019843 // rRNA binding // inferred from electronic annotation 1398762_at NM_031986 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031986.1 /DB_XREF=gi:14010890 /GEN=Sdcbp /FEA=FLmRNA /CNT=41 /TID=Rn.4309.1 /TIER=FL+Stack /STK=30 /UG=Rn.4309 /LL=83841 /DEF=Rattus norvegicus syntenin (Sdcbp), mRNA. /PROD=syntenin /FL=gb:NM_031986.1 gb:AF248548.1 NM_031986 syndecan binding protein Sdcbp 83841 NM_031986 0007265 // Ras protein signal transduction // inferred from electronic annotation /// 0007265 // Ras protein signal transduction // not recorded 0005895 // interleukin-5 receptor complex // inferred from sequence or structural similarity /// 0005895 // interleukin-5 receptor complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0001948 // glycoprotein binding // inferred from physical interaction /// 0005137 // interleukin-5 receptor binding // inferred from sequence or structural similarity /// 0005137 // interleukin-5 receptor binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0019838 // growth factor binding // inferred from physical interaction /// 0042043 // neurexin binding // inferred from physical interaction /// 0042043 // neurexin binding // non-traceable author statement /// 0042803 // protein homodimerization activity // inferred from direct assay /// 0045545 // syndecan binding // inferred from physical interaction /// 0046875 // ephrin receptor binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // inferred from physical interaction /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded /// 0050839 // cell adhesion molecule binding // inferred from physical interaction 1398763_at NM_019352 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019352.1 /DB_XREF=gi:9507188 /GEN=Timm23 /FEA=FLmRNA /CNT=36 /TID=Rn.2230.1 /TIER=FL+Stack /STK=30 /UG=Rn.2230 /LL=54312 /DEF=Rattus norvegicus translocase of inner mitochondrial membrane 23 homolog (yeast) (Timm23), mRNA. /PROD=translocase of inner mitochondrial membrane 23homolog (yeast) /FL=gb:AB006451.1 gb:NM_019352.1 NM_019352 translocase of inner mitochondrial membrane 23 homolog (yeast) Timm23 54312 NM_019352 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from mutant phenotype /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005744 // mitochondrial inner membrane presequence translocase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008565 // protein transporter activity // inferred from electronic annotation /// 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction 1398764_at NM_053330 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053330.1 /DB_XREF=gi:16758035 /GEN=Rpl21 /FEA=FLmRNA /CNT=64 /TID=Rn.2554.1 /TIER=FL+Stack /STK=29 /UG=Rn.2554 /LL=79449 /DEF=Rattus norvegicus ribosomal protein L21 (Rpl21), mRNA. /PROD=ribosomal protein L21 /FL=gb:NM_053330.1 gb:M27905.1 NM_053330 ribosomal protein L21 Rpl21 79449 NM_053330 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1398765_at NM_053837 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053837.1 /DB_XREF=gi:16758937 /GEN=Ap2m1 /FEA=FLmRNA /CNT=51 /TID=Rn.3172.1 /TIER=FL+Stack /STK=29 /UG=Rn.3172 /LL=116563 /DEF=Rattus norvegicus adaptor-related protein complex 2, mu 1 subunit (Ap2m1), mRNA. /PROD=adaptor-related protein complex 2, mu 1 subunit /FL=gb:M23674.1 gb:NM_053837.1 NM_053837 adaptor-related protein complex 2, mu 1 subunit Ap2m1 116563 NM_053837 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // traceable author statement /// 0050690 // regulation of defense response to virus by virus // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005778 // peroxisomal membrane // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030125 // clathrin vesicle coat // traceable author statement /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0030132 // clathrin coat of coated pit // inferred from electronic annotation /// 0030133 // transport vesicle // traceable author statement /// 0030666 // endocytic vesicle membrane // not recorded 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008289 // lipid binding // inferred from electronic annotation 1398766_at NM_013067 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013067.1 /DB_XREF=gi:6981485 /GEN=Rpn1 /FEA=FLmRNA /CNT=42 /TID=Rn.4224.1 /TIER=FL+Stack /STK=28 /UG=Rn.4224 /LL=25596 /DEF=Rattus norvegicus Ribophorin I (Rpn1), mRNA. /PROD=ribophorin I /FL=gb:NM_013067.1 NM_013067 ribophorin I Rpn1 25596 NM_013067 0006486 // protein glycosylation // inferred from electronic annotation /// 0015833 // peptide transport // non-traceable author statement 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019718 // rough microsome // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation 0004579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation 1398767_at NM_017314 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017314.1 /DB_XREF=gi:8394501 /GEN=Ubc /FEA=FLmRNA /CNT=36 /TID=Rn.3761.1 /TIER=FL+Stack /STK=28 /UG=Rn.3761 /LL=50522 /DEF=Rattus norvegicus ubiquitin C (Ubc), mRNA. /PROD=ubiquitin C /FL=gb:NM_017314.1 gb:D17296.1 NM_017314 ubiquitin C Ubc 50522 NM_017314 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation 1398768_at NM_031816 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031816.1 /DB_XREF=gi:13929161 /GEN=Rbbp7 /FEA=FLmRNA /CNT=49 /TID=Rn.3600.1 /TIER=FL+Stack /STK=28 /UG=Rn.3600 /LL=83712 /DEF=Rattus norvegicus retinoblastoma binding protein 7 (Rbbp7), mRNA. /PROD=retinoblastoma binding protein 7 /FL=gb:NM_031816.1 gb:AF090306.1 NM_031816 retinoblastoma binding protein 7 Rbbp7 83712 NM_031816 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006260 // DNA replication // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // not recorded /// 0030308 // negative regulation of cell growth // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0070370 // cellular heat acclimation // not recorded /// 0070370 // cellular heat acclimation // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0016581 // NuRD complex // not recorded /// 0016581 // NuRD complex // inferred from sequence or structural similarity /// 0016581 // NuRD complex // inferred from electronic annotation /// 0035098 // ESC/E(Z) complex // not recorded /// 0035098 // ESC/E(Z) complex // inferred from sequence or structural similarity 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // not recorded 1398769_at NM_019222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019222.1 /DB_XREF=gi:9506506 /GEN=Coro1b /FEA=FLmRNA /CNT=35 /TID=Rn.2819.1 /TIER=FL+Stack /STK=28 /UG=Rn.2819 /LL=29474 /DEF=Rattus norvegicus coronin, actin binding protein 1B (Coro1b), mRNA. /PROD=coronin, actin binding protein 1B /FL=gb:NM_019222.1 NM_019222 coronin, actin-binding protein, 1B Coro1b 29474 NM_019222 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398770_at NM_031105 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031105.1 /DB_XREF=gi:13592060 /GEN=Rpl36a /FEA=FLmRNA /CNT=37 /TID=Rn.755.1 /TIER=FL+Stack /STK=27 /UG=Rn.755 /LL=81769 /DEF=Rattus norvegicus large subunit ribosomal protein L36a (Rpl36a), mRNA. /PROD=large subunit ribosomal protein L36a /FL=gb:NM_031105.1 gb:M19635.1 NM_031105 ribosomal protein L36a-like Rpl36al 81769 NM_031105 0006412 // translation // inferred from electronic annotation /// 0032526 // response to retinoic acid // not recorded /// 0042221 // response to chemical stimulus // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1398771_at NM_019283 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019283.1 /DB_XREF=gi:9506890 /GEN=Slc3a2 /FEA=FLmRNA /CNT=34 /TID=Rn.5801.1 /TIER=FL+Stack /STK=27 /UG=Rn.5801 /LL=50567 /DEF=Rattus norvegicus solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2 (Slc3a2), mRNA. /PROD=solute carrier family 3 (activators of dibasicand neutral amino acid transport), member 2 /FL=gb:NM_019283.1 gb:AB015433.1 gb:U59324.1 NM_019283 solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2 Slc3a2 50567 NM_019283 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006865 // amino acid transport // not recorded /// 0006865 // amino acid transport // inferred from electronic annotation /// 0015804 // neutral amino acid transport // inferred from mutant phenotype /// 0015827 // tryptophan transport // inferred from sequence or structural similarity /// 0060356 // leucine import // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0009986 // cell surface // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred by curator /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015175 // neutral amino acid transmembrane transporter activity // inferred from direct assay /// 0015175 // neutral amino acid transmembrane transporter activity // inferred from mutant phenotype /// 0043169 // cation binding // inferred from electronic annotation 1398772_at NM_031981 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031981.1 /DB_XREF=gi:14010836 /GEN=p47 /FEA=FLmRNA /CNT=30 /TID=Rn.2771.1 /TIER=FL+Stack /STK=27 /UG=Rn.2771 /LL=83809 /DEF=Rattus norvegicus p47 protein (p47), mRNA. /PROD=p47 protein /FL=gb:AB002086.1 gb:NM_031981.1 NM_031981 NSFL1 (p97) cofactor (p47) Nsfl1c 83809 NM_031981 0007030 // Golgi organization // inferred from direct assay /// 0061025 // membrane fusion // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005543 // phospholipid binding // inferred from direct assay /// 0008289 // lipid binding // inferred from electronic annotation /// 0051117 // ATPase binding // inferred from physical interaction 1398773_at NM_130405 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_130405.1 /DB_XREF=gi:18426823 /GEN=Sam68 /FEA=FLmRNA /CNT=38 /TID=Rn.22762.1 /TIER=FL+Stack /STK=24 /UG=Rn.22762 /DEF=Rattus norvegicus src associated in mitosis, 68 kDa (Sam68), mRNA. /PROD=src associated in mitosis, 68 kDa /FL=gb:NM_130405.1 gb:AF305619.1 gb:AF393783.1 NM_130405 KH domain containing, RNA binding, signal transduction associated 1 Khdrbs1 117268 NM_130405 0000086 // G2/M transition of mitotic cell cycle // inferred from sequence or structural similarity /// 0006350 // transcription // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0007166 // cell surface receptor linked signaling pathway // inferred from direct assay /// 0007166 // cell surface receptor linked signaling pathway // not recorded /// 0009966 // regulation of signal transduction // non-traceable author statement /// 0016481 // negative regulation of transcription // not recorded /// 0016481 // negative regulation of transcription // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0046831 // regulation of RNA export from nucleus // not recorded /// 0046831 // regulation of RNA export from nucleus // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0070618 // Grb2-Sos complex // inferred from direct assay 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0005070 // SH3/SH2 adaptor activity // inferred from physical interaction /// 0005070 // SH3/SH2 adaptor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from sequence or structural similarity /// 0017124 // SH3 domain binding // inferred from direct assay /// 0017124 // SH3 domain binding // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from direct assay 1398774_at NM_022699 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022699.1 /DB_XREF=gi:12083658 /GEN=Rpl30 /FEA=FLmRNA /CNT=36 /TID=Rn.36878.1 /TIER=FL+Stack /STK=23 /UG=Rn.36878 /LL=64640 /DEF=Rattus norvegicus ribosomal protein L30 (Rpl30), mRNA. /PROD=ribosomal protein L30 /FL=gb:NM_022699.1 gb:K02932.1 NM_022699 ribosomal protein L30 Rpl30 64640 NM_022699 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1398775_at NM_053982 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053982.1 /DB_XREF=gi:16758881 /GEN=Rps15a /FEA=FLmRNA /CNT=31 /TID=Rn.2890.1 /TIER=FL+Stack /STK=23 /UG=Rn.2890 /LL=117053 /DEF=Rattus norvegicus ribosomal protein S15a (Rps15a), mRNA. /PROD=ribosomal protein S15a /FL=gb:NM_053982.1 NM_053982 ribosomal protein S15a Rps15a 117053 NM_053982 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0009615 // response to virus // not recorded /// 0045787 // positive regulation of cell cycle // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // not recorded /// 0005515 // protein binding // not recorded 1398776_at NM_031698 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031698.1 /DB_XREF=gi:13928973 /GEN=Rpn2 /FEA=FLmRNA /CNT=27 /TID=Rn.6863.1 /TIER=FL+Stack /STK=22 /UG=Rn.6863 /LL=64701 /DEF=Rattus norvegicus ribophorin II (Rpn2), mRNA. /PROD=ribophorin /FL=gb:NM_031698.1 NM_031698 ribophorin II Rpn2 64701 NM_031698 0007568 // aging // inferred from expression pattern /// 0018279 // protein N-linked glycosylation via asparagine // inferred from electronic annotation /// 0042493 // response to drug // inferred from expression pattern 0000421 // autophagic vacuole membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0008250 // oligosaccharyltransferase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019718 // rough microsome // inferred from direct assay 0004579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0043022 // ribosome binding // inferred from direct assay 1398777_at NM_057099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057099.1 /DB_XREF=gi:16923939 /GEN=Psmb6 /FEA=FLmRNA /CNT=37 /TID=Rn.8118.1 /TIER=FL+Stack /STK=21 /UG=Rn.8118 /LL=29666 /DEF=Rattus norvegicus proteasome (prosome, macropain) subunit, beta type 6 (Psmb6), mRNA. /PROD=proteasome (prosome, macropain) subunit, betatype 6 /FL=gb:NM_057099.1 NM_057099 proteasome (prosome, macropain) subunit, beta type 6 Psmb6 29666 NM_057099 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005839 // proteasome core complex // inferred from electronic annotation 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1398778_at NM_017278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017278.1 /DB_XREF=gi:8394059 /GEN=Psma1 /FEA=FLmRNA /CNT=28 /TID=Rn.2668.1 /TIER=FL+Stack /STK=21 /UG=Rn.2668 /LL=29668 /DEF=Rattus norvegicus proteasome (prosome, macropain) subunit, alpha type 1 (Psma1), mRNA. /PROD=proteasome (prosome, macropain) subunit, alphatype 1 /FL=gb:NM_017278.1 gb:M29859.1 NM_017278 proteasome (prosome, macropain) subunit, alpha type 1 Psma1 29668 NM_017278 0002862 // negative regulation of inflammatory response to antigenic stimulus // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005839 // proteasome core complex // inferred from electronic annotation /// 0019773 // proteasome core complex, alpha-subunit complex // inferred from electronic annotation 0001530 // lipopolysaccharide binding // inferred from electronic annotation /// 0001530 // lipopolysaccharide binding // not recorded /// 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1398779_at NM_031146 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031146.1 /DB_XREF=gi:13592136 /GEN=Arpc1a /FEA=FLmRNA /CNT=30 /TID=Rn.844.1 /TIER=FL+Stack /STK=19 /UG=Rn.844 /LL=81824 /DEF=Rattus norvegicus suppressor of profilinp41 of actin-related complex 23 (Arpc1a), mRNA. /PROD=suppressor of profilinp41 of actin-relatedcomplex 23 /FL=gb:NM_031146.1 gb:AF315378.1 NM_031146 actin related protein 2/3 complex, subunit 1A Arpc1a 81824 NM_031146 0030833 // regulation of actin filament polymerization // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398780_at NM_031774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031774.1 /DB_XREF=gi:13929089 /GEN=Rabac1 /FEA=FLmRNA /CNT=32 /TID=Rn.25604.1 /TIER=FL+Stack /STK=18 /UG=Rn.25604 /LL=83583 /DEF=Rattus norvegicus rab acceptor 1 (prenylated) (Rabac1), mRNA. /PROD=rab acceptor 1 (prenylated) /FL=gb:NM_031774.1 gb:AF025506.1 NM_031774 Rab acceptor 1 (prenylated) Rabac1 83583 NM_031774 0016192 // vesicle-mediated transport // non-traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0030674 // protein binding, bridging // non-traceable author statement /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0070064 // proline-rich region binding // inferred from physical interaction 1398781_at NM_053884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053884.1 /DB_XREF=gi:16758753 /GEN=Atp6s14 /FEA=FLmRNA /CNT=26 /TID=Rn.6167.1 /TIER=FL+Stack /STK=18 /UG=Rn.6167 /LL=116664 /DEF=Rattus norvegicus ATPase, vacuolar, 14 kD (Atp6s14), mRNA. /PROD=ATPase, vacuolar, 14 kD /FL=gb:U43175.1 gb:NM_053884.1 NM_053884 ATPase, H transporting, lysosomal V1 subunit F Atp6v1f 116664 NM_053884 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation 0016020 // membrane // not recorded /// 0016471 // vacuolar proton-transporting V-type ATPase complex // not recorded /// 0033178 // proton-transporting two-sector ATPase complex, catalytic domain // inferred from electronic annotation /// 0033180 // proton-transporting V-type ATPase, V1 domain // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0042625 // ATPase activity, coupled to transmembrane movement of ions // inferred from direct assay /// 0046933 // hydrogen ion transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation /// 0046961 // proton-transporting ATPase activity, rotational mechanism // inferred from electronic annotation 1398782_at NM_080585 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_080585.1 /DB_XREF=gi:18034790 /GEN=Napa /FEA=FLmRNA /CNT=25 /TID=Rn.31745.1 /TIER=FL+Stack /STK=18 /UG=Rn.31745 /LL=140673 /DEF=Rattus norvegicus N-ethylmaleimide sensitive fusion protein attachment protein alpha (Napa), mRNA. /PROD=N-ethylmaleimide sensitive fusion proteinattachment protein alpha /FL=gb:NM_080585.1 NM_080585 N-ethylmaleimide-sensitive factor attachment protein, alpha Napa 140673 NM_080585 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // not recorded /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0006944 // cellular membrane fusion // non-traceable author statement /// 0007420 // brain development // inferred from electronic annotation /// 0007420 // brain development // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0030182 // neuron differentiation // inferred from electronic annotation /// 0030182 // neuron differentiation // not recorded /// 0045176 // apical protein localization // inferred from electronic annotation /// 0045176 // apical protein localization // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0070044 // synaptobrevin 2-SNAP-25-syntaxin-1a complex // inferred from direct assay 0000149 // SNARE binding // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019905 // syntaxin binding // inferred from electronic annotation /// 0019905 // syntaxin binding // not recorded 1398783_at NM_053969 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053969.1 /DB_XREF=gi:16758859 /GEN=Gps1 /FEA=FLmRNA /CNT=24 /TID=Rn.16873.1 /TIER=FL+Stack /STK=18 /UG=Rn.16873 /LL=117039 /DEF=Rattus norvegicus G protein pathway suppressor 1 (Gps1), mRNA. /PROD=G protein pathway suppressor 1 /FL=gb:NM_053969.1 NM_053969 G protein pathway suppressor 1 Gps1 117039 NM_053969 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0008180 // signalosome // inferred from electronic annotation /// 0008180 // signalosome // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398784_at NM_019259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019259.1 /DB_XREF=gi:9506434 /GEN=C1qbp /FEA=FLmRNA /CNT=25 /TID=Rn.2765.1 /TIER=FL+Stack /STK=18 /UG=Rn.2765 /LL=29681 /DEF=Rattus norvegicus complement component 1, q subcomponent binding protein (C1qbp), mRNA. /PROD=complement component 1, q subcomponent bindingprotein /FL=gb:NM_019259.1 NM_019259 complement component 1, q subcomponent binding protein C1qbp 29681 NM_019259 0006955 // immune response // traceable author statement 0005615 // extracellular space // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005759 // mitochondrial matrix // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded 0001849 // complement component C1q binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398785_at NM_019208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019208.1 /DB_XREF=gi:9506894 /GEN=Men1 /FEA=FLmRNA /CNT=24 /TID=Rn.6775.1 /TIER=FL+Stack /STK=17 /UG=Rn.6775 /LL=29417 /DEF=Rattus norvegicus multiple endocrine neoplasia 1 (Men1), mRNA. /PROD=multiple endocrine neoplasia 1 /FL=gb:AF130370.1 gb:AF130369.1 gb:AB023400.1 gb:NM_019208.1 NM_019208 multiple endocrine neoplasia 1 Men1 29417 NM_019208 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000165 // MAPKKK cascade // not recorded /// 0001503 // ossification // inferred from electronic annotation /// 0001503 // ossification // not recorded /// 0001776 // leukocyte homeostasis // inferred from electronic annotation /// 0001776 // leukocyte homeostasis // not recorded /// 0001933 // negative regulation of protein phosphorylation // inferred from electronic annotation /// 0001933 // negative regulation of protein phosphorylation // not recorded /// 0002051 // osteoblast fate commitment // inferred from electronic annotation /// 0002051 // osteoblast fate commitment // not recorded /// 0002076 // osteoblast development // inferred from electronic annotation /// 0002076 // osteoblast development // not recorded /// 0006338 // chromatin remodeling // inferred from electronic annotation /// 0006338 // chromatin remodeling // not recorded /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // not recorded /// 0007050 // cell cycle arrest // inferred from electronic annotation /// 0007050 // cell cycle arrest // not recorded /// 0007420 // brain development // inferred from expression pattern /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // not recorded /// 0009411 // response to UV // inferred from electronic annotation /// 0009411 // response to UV // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0010332 // response to gamma radiation // inferred from electronic annotation /// 0010332 // response to gamma radiation // not recorded /// 0016481 // negative regulation of transcription // inferred from electronic annotation /// 0016481 // negative regulation of transcription // not recorded /// 0016571 // histone methylation // not recorded /// 0016571 // histone methylation // inferred from electronic annotation /// 0030097 // hemopoiesis // inferred from electronic annotation /// 0030097 // hemopoiesis // not recorded /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0030511 // positive regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0031062 // positive regulation of histone methylation // inferred from electronic annotation /// 0031062 // positive regulation of histone methylation // not recorded /// 0032925 // regulation of activin receptor signaling pathway // inferred from mutant phenotype /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0043280 // positive regulation of caspase activity // inferred from electronic annotation /// 0043280 // positive regulation of caspase activity // not recorded /// 0043433 // negative regulation of transcription factor activity // inferred from electronic annotation /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0045597 // positive regulation of cell differentiation // not recorded /// 0045597 // positive regulation of cell differentiation // inferred from electronic annotation /// 0045668 // negative regulation of osteoblast differentiation // inferred from electronic annotation /// 0045668 // negative regulation of osteoblast differentiation // not recorded /// 0045669 // positive regulation of osteoblast differentiation // inferred from electronic annotation /// 0045669 // positive regulation of osteoblast differentiation // not recorded /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // inferred from electronic annotation /// 0045736 // negative regulation of cyclin-dependent protein kinase activity // not recorded /// 0045786 // negative regulation of cell cycle // not recorded /// 0045786 // negative regulation of cell cycle // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046329 // negative regulation of JNK cascade // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // not recorded /// 0046621 // negative regulation of organ growth // inferred from electronic annotation /// 0046621 // negative regulation of organ growth // not recorded /// 0048704 // embryonic skeletal system morphogenesis // inferred from electronic annotation /// 0048704 // embryonic skeletal system morphogenesis // not recorded /// 0051781 // positive regulation of cell division // inferred from electronic annotation /// 0051781 // positive regulation of cell division // not recorded /// 0051974 // negative regulation of telomerase activity // inferred from electronic annotation /// 0051974 // negative regulation of telomerase activity // not recorded /// 0060021 // palate development // inferred from electronic annotation /// 0060021 // palate development // not recorded /// 0060135 // maternal process involved in female pregnancy // inferred from electronic annotation /// 0060135 // maternal process involved in female pregnancy // not recorded 0000785 // chromatin // inferred from electronic annotation /// 0000785 // chromatin // not recorded /// 0005625 // soluble fraction // inferred from electronic annotation /// 0005625 // soluble fraction // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016363 // nuclear matrix // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0032154 // cleavage furrow // not recorded /// 0035097 // histone methyltransferase complex // inferred from electronic annotation /// 0035097 // histone methyltransferase complex // not recorded /// 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0000400 // four-way junction DNA binding // inferred from electronic annotation /// 0000400 // four-way junction DNA binding // not recorded /// 0000403 // Y-form DNA binding // inferred from electronic annotation /// 0000403 // Y-form DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003690 // double-stranded DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // inferred from electronic annotation /// 0018024 // histone-lysine N-methyltransferase activity // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0030528 // transcription regulator activity // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded /// 0070412 // R-SMAD binding // inferred from electronic annotation /// 0070412 // R-SMAD binding // not recorded 1398786_at NM_017284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017284.1 /DB_XREF=gi:8394078 /GEN=Psmb2 /FEA=FLmRNA /CNT=23 /TID=Rn.1981.1 /TIER=FL+Stack /STK=17 /UG=Rn.1981 /LL=29675 /DEF=Rattus norvegicus proteasome (prosome, macropain) subunit, beta type, 2 (Psmb2), mRNA. /PROD=proteasome (prosome, macropain) subunit, betatype, 2 /FL=gb:NM_017284.1 NM_017284 proteasome (prosome, macropain) subunit, beta type 2 Psmb2 29675 NM_017284 0010243 // response to organic nitrogen // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005839 // proteasome core complex // inferred from electronic annotation 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1398787_at NM_013216 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013216.1 /DB_XREF=gi:6981475 /GEN=Rheb /FEA=FLmRNA /CNT=46 /TID=Rn.859.1 /TIER=FL+Stack /STK=16 /UG=Rn.859 /LL=26954 /DEF=Rattus norvegicus Ras homolog enriched in brain (Rheb), mRNA. /PROD=Ras homolog enriched in brain /FL=gb:U08227.1 gb:NM_013216.1 NM_013216 Ras homolog enriched in brain Rheb 26954 NM_013216 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from direct assay /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0048168 // regulation of neuronal synaptic plasticity // non-traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation 1398788_at NM_017319 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017319.1 /DB_XREF=gi:8393321 /GEN=ER60 /FEA=FLmRNA /CNT=28 /TID=Rn.74076.1 /TIER=FL+Stack /STK=16 /UG=Rn.74076 /LL=29468 /DEF=Rattus norvegicus ER-60 protease (ER60), mRNA. /PROD=ER-60 protease /FL=gb:NM_031580.1 gb:NM_017319.1 gb:D63378.1 NM_017319 protein disulfide isomerase family A, member 3 Pdia3 29468 NM_017319 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // not recorded /// 0045454 // cell redox homeostasis // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0003756 // protein disulfide isomerase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation 1398789_at NM_031106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031106.1 /DB_XREF=gi:13592062 /GEN=Rpl37 /FEA=FLmRNA /CNT=22 /TID=Rn.5961.1 /TIER=FL+Stack /STK=16 /UG=Rn.5961 /LL=81770 /DEF=Rattus norvegicus ribosomal protein L37 (Rpl37), mRNA. /PROD=ribosomal protein L37 /FL=gb:NM_031106.1 NM_031106 ribosomal protein L37 Rpl37 81770 NM_031106 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019843 // rRNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398790_at NM_017039 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017039.1 /DB_XREF=gi:8394017 /GEN=Ppp2ca /FEA=FLmRNA /CNT=41 /TID=Rn.1271.1 /TIER=FL+Stack /STK=15 /UG=Rn.1271 /LL=24672 /DEF=Rattus norvegicus Protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform (Ppp2ca), mRNA. /PROD=protein phosphatase 2 (formerly 2A), catalyticsubunit, alpha isoform /FL=gb:NM_017039.1 gb:M33114.1 NM_017039 protein phosphatase 2, catalytic subunit, alpha isoform Ppp2ca 24672 NM_017039 0006470 // protein dephosphorylation // inferred from direct assay /// 0007126 // meiosis // inferred from electronic annotation /// 0007498 // mesoderm development // inferred from electronic annotation /// 0007498 // mesoderm development // not recorded /// 0010468 // regulation of gene expression // inferred from electronic annotation /// 0042221 // response to chemical stimulus // inferred from electronic annotation /// 0042542 // response to hydrogen peroxide // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0046580 // negative regulation of Ras protein signal transduction // inferred from direct assay /// 0046677 // response to antibiotic // inferred from electronic annotation 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation /// 0000159 // protein phosphatase type 2A complex // not recorded /// 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000775 // chromosome, centromeric region // not recorded /// 0000922 // spindle pole // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from direct assay /// 0004722 // protein serine/threonine phosphatase activity // traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from sequence or structural similarity 1398791_at NM_031614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031614.1 /DB_XREF=gi:13928839 /GEN=Txnrd1 /FEA=FLmRNA /CNT=21 /TID=Rn.9474.1 /TIER=FL+Stack /STK=15 /UG=Rn.9474 /LL=58819 /DEF=Rattus norvegicus thioredoxin reductase 1 (Txnrd1), mRNA. /PROD=thioredoxin reductase 1 /FL=gb:NM_031614.1 gb:AF108213.1 gb:AF220760.1 gb:U63923.2 NM_031614 thioredoxin reductase 1 Txnrd1 58819 NM_031614 0001707 // mesoderm formation // not recorded /// 0001707 // mesoderm formation // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from direct assay /// 0007369 // gastrulation // not recorded /// 0007369 // gastrulation // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008283 // cell proliferation // not recorded /// 0008283 // cell proliferation // inferred from electronic annotation /// 0042744 // hydrogen peroxide catabolic process // inferred from mutant phenotype /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0004791 // thioredoxin-disulfide reductase activity // inferred from direct assay /// 0004791 // thioredoxin-disulfide reductase activity // inferred from electronic annotation /// 0004791 // thioredoxin-disulfide reductase activity // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016668 // oxidoreductase activity, acting on a sulfur group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0050660 // FAD or FADH2 binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from electronic annotation 1398792_at NM_057123 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057123.1 /DB_XREF=gi:16923971 /GEN=Psmc1 /FEA=FLmRNA /CNT=22 /TID=Rn.10526.1 /TIER=FL+Stack /STK=15 /UG=Rn.10526 /LL=117263 /DEF=Rattus norvegicus protease (prosome, macropain) 26S subunit, ATPase 1 (Psmc1), mRNA. /PROD=protease (prosome, macropain) 26S subunit,ATPase 1 /FL=gb:D50696.1 gb:NM_057123.1 NM_057123 proteasome (prosome, macropain) 26S subunit, ATPase, 1 Psmc1 117263 NM_057123 0030163 // protein catabolic process // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // traceable author statement /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1398793_at NM_053527 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053527.1 /DB_XREF=gi:16758289 /GEN=Cdc5l /FEA=FLmRNA /CNT=23 /TID=Rn.54977.1 /TIER=FL+Stack /STK=15 /UG=Rn.54977 /LL=85434 /DEF=Rattus norvegicus CDC5 (cell division cycle 5, S. pombe, homolog)-like (Cdc5l), mRNA. /PROD=CDC5 (cell division cycle 5, S. pombe,homolog)-like /FL=gb:AF000578.2 gb:NM_053527.1 NM_053527 CDC5 cell division cycle 5-like (S. pombe) Cdc5l 85434 NM_053527 0000086 // G2/M transition of mitotic cell cycle // traceable author statement /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from direct assay /// 0016607 // nuclear speck // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from direct assay 1398794_at NM_022593 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022593.1 /DB_XREF=gi:12018253 /GEN=Tceb1 /FEA=FLmRNA /CNT=43 /TID=Rn.5996.1 /TIER=FL+Stack /STK=14 /UG=Rn.5996 /LL=64525 /DEF=Rattus norvegicus elongation factor SIII p15 subunit (Tceb1), mRNA. /PROD=elongation factor SIII p15 subunit /FL=gb:L29259.1 gb:NM_022593.1 NM_022593 transcription elongation factor B (SIII), polypeptide 1 Tceb1 64525 NM_022593 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // traceable author statement /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0030891 // VCB complex // inferred from direct assay 0003702 // RNA polymerase II transcription factor activity // inferred from direct assay /// 0003711 // transcription elongation regulator activity // traceable author statement /// 0004842 // ubiquitin-protein ligase activity // inferred by curator /// 0005515 // protein binding // inferred by curator /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1398795_at NM_053799 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053799.1 /DB_XREF=gi:16758641 /GEN=Dars /FEA=FLmRNA /CNT=21 /TID=Rn.2388.1 /TIER=FL+Stack /STK=14 /UG=Rn.2388 /LL=116483 /DEF=Rattus norvegicus aspartyl-tRNA synthetase (Dars), mRNA. /PROD=aspartyl-tRNA synthetase /FL=gb:J04487.1 gb:NM_053799.1 NM_053799 aspartyl-tRNA synthetase Dars 116483 NM_053799 0006412 // translation // inferred from electronic annotation /// 0006418 // tRNA aminoacylation for protein translation // inferred from electronic annotation /// 0006422 // aspartyl-tRNA aminoacylation // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0017101 // aminoacyl-tRNA synthetase multienzyme complex // traceable author statement 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0004815 // aspartate-tRNA ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation 1398796_at NM_053467 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053467.1 /DB_XREF=gi:16758213 /GEN=Tmp21 /FEA=FLmRNA /CNT=26 /TID=Rn.8509.1 /TIER=FL+Stack /STK=14 /UG=Rn.8509 /LL=84599 /DEF=Rattus norvegicus integral membrane protein Tmp21-I (p23) (Tmp21), mRNA. /PROD=integral membrane protein Tmp21-I (p23) /FL=gb:NM_053467.1 NM_053467 transmembrane emp24-like trafficking protein 10 (yeast) Tmed10 84599 NM_053467 0001101 // response to acid // inferred from expression pattern /// 0001822 // kidney development // inferred from expression pattern /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // non-traceable author statement /// 0006886 // intracellular protein transport // traceable author statement /// 0006903 // vesicle targeting // non-traceable author statement /// 0007030 // Golgi organization // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0043279 // response to alkaloid // inferred from expression pattern /// 0045055 // regulated secretory pathway // inferred from expression pattern /// 0045055 // regulated secretory pathway // not recorded /// 0048199 // vesicle targeting, to, from or within Golgi // inferred from expression pattern /// 0048199 // vesicle targeting, to, from or within Golgi // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005793 // ER-Golgi intermediate compartment // inferred from direct assay /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005801 // cis-Golgi network // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030137 // COPI-coated vesicle // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0042589 // zymogen granule membrane // inferred from direct assay /// 0042589 // zymogen granule membrane // not recorded /// 0070765 // gamma-secretase complex // inferred from direct assay 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0032403 // protein complex binding // inferred from direct assay 1398797_at NM_057141 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057141.1 /DB_XREF=gi:16923997 /GEN=Hnrpk /FEA=FLmRNA /CNT=56 /TID=Rn.11854.1 /TIER=FL+Stack /STK=13 /UG=Rn.11854 /LL=117282 /DEF=Rattus norvegicus heterogeneous nuclear ribonucleoprotein K (Hnrpk), mRNA. /PROD=heterogeneous nuclear ribonucleoprotein K /FL=gb:D17711.1 gb:NM_057141.1 NM_057141 heterogeneous nuclear ribonucleoprotein K Hnrnpk 117282 NM_057141 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1398798_at NM_022539 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022539.1 /DB_XREF=gi:11993953 /GEN=Metap2 /FEA=FLmRNA /CNT=26 /TID=Rn.1984.1 /TIER=FL+Stack /STK=13 /UG=Rn.1984 /LL=64370 /DEF=Rattus norvegicus methionine aminopeptidase 2 (Metap2), mRNA. /PROD=initiation factor 2 associated 67 kDa protein /FL=gb:NM_022539.1 gb:L10652.1 NM_022539 methionyl aminopeptidase 2 Metap2 64370 NM_022539 0006508 // proteolysis // inferred from electronic annotation /// 0009987 // cellular process // inferred from electronic annotation /// 0016485 // protein processing // not recorded /// 0016485 // protein processing // inferred from sequence or structural similarity /// 0016485 // protein processing // inferred from electronic annotation /// 0018206 // peptidyl-methionine modification // not recorded /// 0018206 // peptidyl-methionine modification // inferred from sequence or structural similarity /// 0018206 // peptidyl-methionine modification // inferred from electronic annotation /// 0031365 // N-terminal protein amino acid modification // not recorded /// 0031365 // N-terminal protein amino acid modification // inferred from sequence or structural similarity /// 0031365 // N-terminal protein amino acid modification // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0004177 // aminopeptidase activity // not recorded /// 0004177 // aminopeptidase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008235 // metalloexopeptidase activity // inferred from electronic annotation /// 0008235 // metalloexopeptidase activity // not recorded /// 0008235 // metalloexopeptidase activity // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398799_at NM_053974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053974.1 /DB_XREF=gi:16758869 /GEN=Eif4e /FEA=FLmRNA /CNT=26 /TID=Rn.11275.1 /TIER=FL+Stack /STK=12 /UG=Rn.11275 /LL=117045 /DEF=Rattus norvegicus eukaryotic translation initiation factor 4E (Eif4e), mRNA. /PROD=eukaryotic translation initiation factor 4E /FL=gb:NM_053974.1 NM_053974 eukaryotic translation initiation factor 4E Eif4e 117045 NM_053974 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // traceable author statement /// 0006413 // translational initiation // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0045931 // positive regulation of mitotic cell cycle // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005845 // mRNA cap binding complex // not recorded /// 0005845 // mRNA cap binding complex // inferred from sequence or structural similarity /// 0016281 // eukaryotic translation initiation factor 4F complex // inferred from direct assay /// 0016281 // eukaryotic translation initiation factor 4F complex // inferred from mutant phenotype /// 0043234 // protein complex // inferred from direct assay /// 0043234 // protein complex // inferred from mutant phenotype 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // translation initiation factor activity // traceable author statement /// 0005515 // protein binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0031370 // eukaryotic initiation factor 4G binding // inferred from mutant phenotype /// 0031370 // eukaryotic initiation factor 4G binding // inferred from physical interaction 1398800_at NM_019377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019377.1 /DB_XREF=gi:9507242 /GEN=Ywhab /FEA=FLmRNA /CNT=37 /TID=Rn.8653.1 /TIER=FL+Stack /STK=12 /UG=Rn.8653 /LL=56011 /DEF=Rattus norvegicus 14-3-3 protein beta-subtype (Ywhab), mRNA. /PROD=14-3-3 protein beta-subtype /FL=gb:D17446.1 gb:NM_019377.1 NM_019377 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide Ywhab 56011 NM_019377 0006605 // protein targeting // inferred from electronic annotation /// 0006605 // protein targeting // not recorded /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0007265 // Ras protein signal transduction // not recorded /// 0008633 // activation of pro-apoptotic gene products // not recorded /// 0016481 // negative regulation of transcription // inferred from mutant phenotype /// 0035308 // negative regulation of protein dephosphorylation // inferred from electronic annotation /// 0035308 // negative regulation of protein dephosphorylation // not recorded /// 0043085 // positive regulation of catalytic activity // inferred from electronic annotation /// 0043085 // positive regulation of catalytic activity // not recorded /// 0051220 // cytoplasmic sequestering of protein // inferred from electronic annotation /// 0051220 // cytoplasmic sequestering of protein // not recorded /// 0051291 // protein heterooligomerization // inferred from physical interaction 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0017053 // transcriptional repressor complex // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0003714 // transcription corepressor activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded /// 0050815 // phosphoserine binding // inferred from electronic annotation /// 0050815 // phosphoserine binding // not recorded /// 0051219 // phosphoprotein binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // not recorded 1398801_at NM_134415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134415.1 /DB_XREF=gi:19705550 /GEN=Cdk105 /FEA=FLmRNA /CNT=18 /TID=Rn.15195.1 /TIER=FL+Stack /STK=12 /UG=Rn.15195 /LL=171456 /DEF=Rattus norvegicus CDK105 protein (Cdk105), mRNA. /PROD=CDK105 protein /FL=gb:NM_134415.1 NM_134415 CDK105 protein Cdk105 171456 NM_134415 0006364 // rRNA processing // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 1398802_at AW435034 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435034 /DB_XREF=gi:6966341 /DB_XREF=UI-R-BJ0p-afv-h-02-0-UI.s1 /CLONE=UI-R-BJ0p-afv-h-02-0-UI /FEA=FLmRNA /CNT=47 /TID=Rn.2778.1 /TIER=Stack /STK=10 /UG=Rn.2778 /LL=81920 /UG_GENE=Ube2d3 /UG_TITLE=ubiquitin-conjugating enzyme E2D 3 (homologous to yeast UBC45) /FL=gb:NM_031237.1 gb:AB006852.1 gb:U13175.1 AW435034 ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast) Ube2d3 81920 NM_031237 0000209 // protein polyubiquitination // not recorded /// 0000209 // protein polyubiquitination // inferred from sequence or structural similarity /// 0006281 // DNA repair // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0006513 // protein monoubiquitination // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded /// 0030509 // BMP signaling pathway // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0070936 // protein K48-linked ubiquitination // inferred from sequence or structural similarity /// 0070979 // protein K11-linked ubiquitination // not recorded /// 0070979 // protein K11-linked ubiquitination // inferred from sequence or structural similarity 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1398803_at NM_019226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019226.1 /DB_XREF=gi:9506548 /GEN=Dnch1 /FEA=FLmRNA /CNT=21 /TID=Rn.11027.1 /TIER=FL+Stack /STK=11 /UG=Rn.11027 /LL=29489 /DEF=Rattus norvegicus dynein, cytoplasmic, heavy chain 1 (Dnch1), mRNA. /PROD=dynein, cytoplasmic, heavy chain 1 /FL=gb:D13896.1 gb:NM_019226.1 gb:L08505.1 NM_019226 dynein cytoplasmic 1 heavy chain 1 Dync1h1 29489 NM_019226 0006810 // transport // inferred from electronic annotation /// 0007018 // microtubule-based movement // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0030286 // dynein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1398804_at NM_133324 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_133324.1 /DB_XREF=gi:19033371 /GEN=AF272892 /FEA=FLmRNA /CNT=21 /TID=Rn.8432.1 /TIER=FL+Stack /STK=11 /UG=Rn.8432 /LL=64472 /DEF=Rattus norvegicus corneal wound healing related protein (AF272892), mRNA. /PROD=corneal wound healing related protein /FL=gb:NM_133324.1 gb:AF272892.1 NM_133324 MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) Mak10 64472 NM_133324 0048659 // smooth muscle cell proliferation // not recorded /// 0048659 // smooth muscle cell proliferation // inferred from sequence or structural similarity /// 0048659 // smooth muscle cell proliferation // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398805_at NM_134394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_134394.1 /DB_XREF=gi:19705510 /GEN=PIG-1 /FEA=FLmRNA /CNT=14 /TID=Rn.3084.1 /TIER=FL+Stack /STK=11 /UG=Rn.3084 /LL=171415 /DEF=Rattus norvegicus preconditioning-inducible gene 1 protein (PIG-1), mRNA. /PROD=preconditioning-inducible gene 1 protein /FL=gb:NM_134394.1 gb:AF175224.1 NM_134394 ATG3 autophagy related 3 homolog (S. cerevisiae) Atg3 171415 NM_134394 0000045 // autophagic vacuole assembly // inferred from sequence or structural similarity /// 0006464 // protein modification process // inferred from electronic annotation /// 0006464 // protein modification process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006914 // autophagy // inferred from expression pattern /// 0006914 // autophagy // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded /// 0043653 // mitochondrial fragmentation involved in apoptosis // inferred from sequence or structural similarity 0000153 // cytoplasmic ubiquitin ligase complex // inferred from electronic annotation /// 0000153 // cytoplasmic ubiquitin ligase complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019776 // Atg8 ligase activity // inferred from sequence or structural similarity /// 0019777 // Atg12 ligase activity // inferred from sequence or structural similarity /// 0019787 // small conjugating protein ligase activity // not recorded /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded 1398806_at NM_017231 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017231.1 /DB_XREF=gi:8393961 /GEN=Pitpn /FEA=FLmRNA /CNT=22 /TID=Rn.9771.1 /TIER=FL+Stack /STK=10 /UG=Rn.9771 /LL=29525 /DEF=Rattus norvegicus phosphatidylinositol transfer protein (Pitpn), mRNA. /PROD=phosphatidylinositol transfer protein /FL=gb:NM_017231.1 gb:M25758.1 NM_017231 phosphatidylinositol transfer protein, alpha Pitpna 29525 NM_017231 0006810 // transport // inferred from electronic annotation /// 0015914 // phospholipid transport // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005543 // phospholipid binding // inferred from direct assay /// 0008289 // lipid binding // inferred from electronic annotation /// 0008526 // phosphatidylinositol transporter activity // traceable author statement 1398807_at NM_033096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_033096.1 /DB_XREF=gi:14861863 /GEN=Ppm1b /FEA=FLmRNA /CNT=18 /TID=Rn.4143.1 /TIER=FL+Stack /STK=10 /UG=Rn.4143 /LL=24667 /DEF=Rattus norvegicus Protein phosphatase type 1B (formely 2C), Mg-dependent, beta isoform (Ppm1b), mRNA. /PROD=protein phosphatase type 1B (formely 2C),Mg-dependent, beta isoform /FL=gb:NM_033096.1 NM_033096 protein phosphatase 1B, magnesium dependent, beta isoform Ppm1b 24667 NM_033096 0006470 // protein dephosphorylation // inferred from electronic annotation 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/threonine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398808_at NM_032057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_032057.1 /DB_XREF=gi:14091735 /GEN=Impa1 /FEA=FLmRNA /CNT=31 /TID=Rn.3975.1 /TIER=FL+Stack /STK=8 /UG=Rn.3975 /LL=83523 /DEF=Rattus norvegicus Inositol (myo)-1(or 4)-monophosphatase 1 (Impa1), mRNA. /PROD=Inositol (myo)-1(or 4)-monophosphatase 1 /FL=gb:U84038.2 gb:NM_032057.1 NM_032057 Inositol (myo)-1(or 4)-monophosphatase 1 Impa1 83523 NM_032057 0006661 // phosphatidylinositol biosynthetic process // inferred from mutant phenotype /// 0006661 // phosphatidylinositol biosynthetic process // not recorded /// 0006661 // phosphatidylinositol biosynthetic process // inferred from electronic annotation /// 0006796 // phosphate metabolic process // inferred from electronic annotation /// 0006796 // phosphate metabolic process // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0010226 // response to lithium ion // inferred from expression pattern /// 0046855 // inositol phosphate dephosphorylation // inferred from electronic annotation /// 0046855 // inositol phosphate dephosphorylation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030424 // axon // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0008934 // inositol-1(or 4)-monophosphatase activity // inferred from direct assay /// 0008934 // inositol-1(or 4)-monophosphatase activity // not recorded /// 0008934 // inositol-1(or 4)-monophosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1398809_at NM_053347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053347.1 /DB_XREF=gi:16758065 /GEN=Nude /FEA=FLmRNA /CNT=12 /TID=Rn.20222.1 /TIER=FL+Stack /STK=8 /UG=Rn.20222 /LL=83836 /DEF=Rattus norvegicus nuclear distribution gene E homolog (Aspergillus) (Nude), mRNA. /PROD=nuclear distribution gene E homolog(Aspergillus) /FL=gb:NM_053347.1 gb:AF240463.1 NM_053347 nudE nuclear distribution gene E homolog 1 (A. nidulans) Nde1 83836 NM_053347 0000132 // establishment of mitotic spindle orientation // not recorded /// 0001764 // neuron migration // not recorded /// 0007020 // microtubule nucleation // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007405 // neuroblast proliferation // not recorded /// 0021987 // cerebral cortex development // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0030900 // forebrain development // not recorded /// 0031023 // microtubule organizing center organization // not recorded /// 0047496 // vesicle transport along microtubule // not recorded /// 0051298 // centrosome duplication // not recorded /// 0051298 // centrosome duplication // inferred from sequence or structural similarity /// 0051301 // cell division // inferred from electronic annotation /// 0051303 // establishment of chromosome localization // not recorded 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // not recorded /// 0000776 // kinetochore // inferred from electronic annotation /// 0000777 // condensed chromosome kinetochore // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005815 // microtubule organizing center // not recorded /// 0005819 // spindle // inferred from electronic annotation /// 0005819 // spindle // not recorded /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0031616 // spindle pole centrosome // not recorded /// 0031616 // spindle pole centrosome // inferred from sequence or structural similarity 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // not recorded /// 0008017 // microtubule binding // inferred from sequence or structural similarity /// 0042802 // identical protein binding // not recorded 1398810_at NM_022595 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022595.1 /DB_XREF=gi:12018257 /GEN=Haspp28 /FEA=FLmRNA /CNT=13 /TID=Rn.6158.1 /TIER=FL+Stack /STK=8 /UG=Rn.6158 /LL=64527 /DEF=Rattus norvegicus kinase substrate HASPP28 (Haspp28), mRNA. /PROD=kinase substrate HASPP28 /FL=gb:NM_022595.1 gb:U41744.1 gb:U26541.1 NM_022595 PDGFA associated protein 1 Pdap1 64527 NM_022595 1398811_at NM_019213 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_019213.1 /DB_XREF=gi:11139302 /GEN=Jtb /FEA=FLmRNA /CNT=24 /TID=Rn.12078.1 /TIER=FL+Stack /STK=6 /UG=Rn.12078 /LL=29439 /DEF=Rattus norvegicus jumping translocation breakpoint (Jtb), mRNA. /PROD=jumping translocation breakpoint /FL=gb:NM_019213.1 gb:AB016489.1 NM_019213 jumping translocation breakpoint Jtb 29439 NM_019213 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1398812_at NM_053590 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053590.1 /DB_XREF=gi:16758369 /GEN=Psmb1 /FEA=FLmRNA /CNT=33 /TID=Rn.6016.1 /TIER=FL+Stack /STK=6 /UG=Rn.6016 /LL=94198 /DEF=Rattus norvegicus proteasome (prosome, macropain) subunit, beta type 1 (Psmb1), mRNA. /PROD=proteasome (prosome, macropain) subunit, betatype 1 /FL=gb:NM_053590.1 NM_053590 proteasome (prosome, macropain) subunit, beta type 1 Psmb1 94198 NM_053590 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005839 // proteasome core complex // inferred from electronic annotation 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1398813_at NM_057205 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057205.1 /DB_XREF=gi:17105357 /GEN=Ube1c /FEA=FLmRNA /CNT=16 /TID=Rn.2141.1 /TIER=FL+Stack /STK=6 /UG=Rn.2141 /LL=117553 /DEF=Rattus norvegicus ubiquitin-activating enzyme E1C (Ube1c), mRNA. /PROD=ubiquitin-activating enzyme E1C /FL=gb:NM_057205.1 gb:AF336829.1 NM_057205 ubiquitin-like modifier activating enzyme 3 Uba3 117553 NM_057205 0000278 // mitotic cell cycle // not recorded /// 0000278 // mitotic cell cycle // inferred from electronic annotation /// 0006464 // protein modification process // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007113 // endomitotic cell cycle // inferred from electronic annotation /// 0007113 // endomitotic cell cycle // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0016481 // negative regulation of transcription // inferred from direct assay /// 0045116 // protein neddylation // inferred from electronic annotation /// 0045116 // protein neddylation // traceable author statement /// 0051726 // regulation of cell cycle // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008641 // small protein activating enzyme activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from direct assay /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0016922 // ligand-dependent nuclear receptor binding // inferred from physical interaction /// 0019781 // NEDD8 activating enzyme activity // inferred from direct assay /// 0019781 // NEDD8 activating enzyme activity // inferred from mutant phenotype /// 0046982 // protein heterodimerization activity // inferred from mutant phenotype /// 0046982 // protein heterodimerization activity // not recorded /// 0046982 // protein heterodimerization activity // inferred from electronic annotation 1398814_at NM_031152 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031152.1 /DB_XREF=gi:13592147 /GEN=Rab11a /FEA=FLmRNA /CNT=21 /TID=Rn.1016.1 /TIER=FL /STK=5 /UG=Rn.1016 /LL=81830 /DEF=Rattus norvegicus RAB11a, member RAS oncogene family (Rab11a), mRNA. /PROD=RAB11a, member RAS oncogene family /FL=gb:NM_031152.1 gb:M75153.1 NM_031152 RAB11a, member RAS oncogene family Rab11a 81830 NM_031152 0000910 // cytokinesis // inferred from electronic annotation /// 0000910 // cytokinesis // not recorded /// 0006184 // GTP catabolic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0048169 // regulation of long-term neuronal synaptic plasticity // inferred from mutant phenotype /// 0051223 // regulation of protein transport // inferred from mutant phenotype 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030133 // transport vesicle // inferred from direct assay /// 0032154 // cleavage furrow // not recorded /// 0032154 // cleavage furrow // inferred from sequence or structural similarity /// 0032154 // cleavage furrow // inferred from electronic annotation /// 0055037 // recycling endosome // inferred from direct assay /// 0055037 // recycling endosome // not recorded /// 0055038 // recycling endosome membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation 1398815_at NM_012500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012500.1 /DB_XREF=gi:6978512 /GEN=Apeh /FEA=FLmRNA /CNT=9 /TID=Rn.11057.1 /TIER=FL /STK=5 /UG=Rn.11057 /LL=24206 /DEF=Rattus norvegicus N-acylaminoacyl-peptide hydrolase (Apeh), mRNA. /PROD=n-acylaminoacyl-peptide hydrolase /FL=gb:NM_012500.1 gb:J04733.1 NM_012500 N-acylaminoacyl-peptide hydrolase Apeh 24206 NM_012500 0006508 // proteolysis // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1398816_at BE105853 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105853 /DB_XREF=gi:8497955 /DB_XREF=UI-R-BO1-asj-a-04-0-UI.s1 /CLONE=UI-R-BO1-asj-a-04-0-UI /FEA=FLmRNA /CNT=41 /TID=Rn.40177.1 /TIER=Stack /STK=10 /UG=Rn.40177 /LL=25328 /UG_GENE=Lamp1 /UG_TITLE=Lysosomal associated membrane protein 1 (120 kDa) /FL=gb:NM_012857.1 gb:M34959.1 BE105853 lysosomal-associated membrane protein 1 Lamp1 25328 NM_012857 0006914 // autophagy // inferred from expression pattern 0005764 // lysosome // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005770 // late endosome // inferred from electronic annotation /// 0005771 // multivesicular body // inferred from electronic annotation /// 0005771 // multivesicular body // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // inferred from electronic annotation /// 0009897 // external side of plasma membrane // not recorded /// 0009986 // cell surface // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from electronic annotation /// 0042383 // sarcolemma // not recorded /// 0042470 // melanosome // inferred from electronic annotation /// 0042470 // melanosome // not recorded 0005515 // protein binding // not recorded 1398817_at NM_022518 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022518.1 /DB_XREF=gi:11968097 /GEN=Arf1 /FEA=FLmRNA /CNT=82 /TID=Rn.1391.1 /TIER=FL /STK=2 /UG=Rn.1391 /LL=64310 /DEF=Rattus norvegicus ADP-ribosylation factor 1 (Arf1), mRNA. /PROD=ADP-ribosylation factor 1 /FL=gb:NM_022518.1 gb:L12380.1 NM_022518 ADP-ribosylation factor 1 Arf1 64310 NM_022518 0006810 // transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // not recorded /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // not recorded /// 0048205 // COPI coating of Golgi vesicle // not recorded 0000139 // Golgi membrane // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0012505 // endomembrane system // not recorded /// 0030017 // sarcomere // inferred from electronic annotation /// 0030017 // sarcomere // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1398818_at NM_024377 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_024377.1 /DB_XREF=gi:13242280 /GEN=Gng5 /FEA=FLmRNA /CNT=32 /TID=Rn.2695.1 /TIER=FL /STK=2 /UG=Rn.2695 /LL=79218 /DEF=Rattus norvegicus G protein gamma-5 subunit (Gng5), mRNA. /PROD=G protein gamma-5 subunit /FL=gb:NM_024377.1 gb:M95780.1 NM_024377 guanine nucleotide binding protein (G protein), gamma 5 Gng5 79218 NM_024377 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded 0005739 // mitochondrion // not recorded /// 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation 1398819_at NM_022934 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022934.1 /DB_XREF=gi:12621093 /GEN=Hsj2 /FEA=FLmRNA /CNT=20 /TID=Rn.64562.1 /TIER=FL /STK=2 /UG=Rn.64562 /LL=65028 /DEF=Rattus norvegicus DnaJ-like protein (Hsj2), mRNA. /PROD=DnaJ-like protein 2 /FL=gb:U53922.1 gb:NM_022934.1 NM_022934 DnaJ (Hsp40) homolog, subfamily A, member 1 Dnaja1 65028 NM_022934 0006457 // protein folding // inferred from electronic annotation /// 0007283 // spermatogenesis // not recorded /// 0009408 // response to heat // inferred from electronic annotation /// 0030317 // sperm motility // not recorded /// 0030521 // androgen receptor signaling pathway // not recorded /// 0042769 // DNA damage response, detection of DNA damage // inferred from direct assay 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050750 // low-density lipoprotein receptor binding // not recorded /// 0051082 // unfolded protein binding // inferred from electronic annotation 1398820_at NM_057209 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057209.1 /DB_XREF=gi:17105363 /GEN=Mylk2 /FEA=FLmRNA /CNT=2 /TID=Rn.81191.1 /TIER=FL /STK=2 /UG=Rn.81191 /LL=117558 /DEF=Rattus norvegicus myosin light chain kinase 2, skeletal muscle (Mylk2), mRNA. /PROD=myosin light chain kinase 2, skeletal muscle /FL=gb:NM_057209.1 gb:J03886.1 NM_057209 myosin light chain kinase 2 Mylk2 117558 NM_057209 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006833 // water transport // inferred from mutant phenotype /// 0006936 // muscle contraction // inferred from expression pattern /// 0006937 // regulation of muscle contraction // inferred from mutant phenotype /// 0006941 // striated muscle contraction // inferred from electronic annotation /// 0006941 // striated muscle contraction // not recorded /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // traceable author statement /// 0031448 // positive regulation of fast-twitch skeletal muscle fiber contraction // inferred from mutant phenotype /// 0032971 // regulation of muscle filament sliding // inferred from electronic annotation /// 0032971 // regulation of muscle filament sliding // not recorded /// 0043408 // regulation of MAPKKK cascade // inferred from mutant phenotype /// 0048168 // regulation of neuronal synaptic plasticity // inferred from mutant phenotype /// 0048489 // synaptic vesicle transport // inferred from mutant phenotype /// 0051272 // positive regulation of cellular component movement // inferred from mutant phenotype /// 0051726 // regulation of cell cycle // inferred from mutant phenotype /// 0055008 // cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055008 // cardiac muscle tissue morphogenesis // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004687 // myosin light chain kinase activity // inferred from direct assay /// 0004687 // myosin light chain kinase activity // inferred from mutant phenotype /// 0004687 // myosin light chain kinase activity // not recorded /// 0004687 // myosin light chain kinase activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0032027 // myosin light chain binding // inferred from mutant phenotype 1398821_s_at AA924075 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924075 /DB_XREF=gi:4234167 /DB_XREF=UI-R-A1-du-f-08-0-UI.s1 /CLONE=UI-R-A1-du-f-08-0-UI /FEA=EST /CNT=2 /TID=Rn.54631.1 /TIER=ConsEnd /STK=1 /UG=Rn.54631 /UG_TITLE=ESTs AA924075 myosin light chain kinase 2 Mylk2 117558 NM_057209 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006833 // water transport // inferred from mutant phenotype /// 0006936 // muscle contraction // inferred from expression pattern /// 0006937 // regulation of muscle contraction // inferred from mutant phenotype /// 0006941 // striated muscle contraction // inferred from electronic annotation /// 0006941 // striated muscle contraction // not recorded /// 0007274 // neuromuscular synaptic transmission // not recorded /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // traceable author statement /// 0031448 // positive regulation of fast-twitch skeletal muscle fiber contraction // inferred from mutant phenotype /// 0032971 // regulation of muscle filament sliding // inferred from electronic annotation /// 0032971 // regulation of muscle filament sliding // not recorded /// 0043408 // regulation of MAPKKK cascade // inferred from mutant phenotype /// 0048168 // regulation of neuronal synaptic plasticity // inferred from mutant phenotype /// 0048489 // synaptic vesicle transport // inferred from mutant phenotype /// 0051272 // positive regulation of cellular component movement // inferred from mutant phenotype /// 0051726 // regulation of cell cycle // inferred from mutant phenotype /// 0055008 // cardiac muscle tissue morphogenesis // inferred from electronic annotation /// 0055008 // cardiac muscle tissue morphogenesis // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0014069 // postsynaptic density // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay /// 0043195 // terminal button // inferred from direct assay /// 0043197 // dendritic spine // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004687 // myosin light chain kinase activity // inferred from direct assay /// 0004687 // myosin light chain kinase activity // inferred from mutant phenotype /// 0004687 // myosin light chain kinase activity // not recorded /// 0004687 // myosin light chain kinase activity // inferred from electronic annotation /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0032027 // myosin light chain binding // inferred from mutant phenotype 1398822_at NM_017276 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_017276.1 /DB_XREF=gi:8393427 /GEN=Gdi3 /FEA=FLmRNA /CNT=36 /TID=Rn.1441.1 /TIER=FL /STK=1 /UG=Rn.1441 /LL=29661 /DEF=Rattus norvegicus guanosine diphosphate (GDP) dissociation inhibitor 3 (Gdi3), mRNA. /PROD=guanosine diphosphate (GDP) dissociationinhibitor 3 /FL=gb:NM_017276.1 NM_017276 GDP dissociation inhibitor 2 Gdi2 29662 NM_017276 0007264 // small GTPase mediated signal transduction // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0015031 // protein transport // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from expression pattern /// 0043087 // regulation of GTPase activity // inferred from electronic annotation /// 0050790 // regulation of catalytic activity // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005829 // cytosol // traceable author statement /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005093 // Rab GDP-dissociation inhibitor activity // inferred from direct assay /// 0005093 // Rab GDP-dissociation inhibitor activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // not recorded /// 0005515 // protein binding // not recorded /// 0031267 // small GTPase binding // inferred from direct assay 1398823_at AF262357 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF262357.1 /DB_XREF=gi:8515733 /FEA=FLmRNA /CNT=33 /TID=Rn.2315.1 /TIER=FL /STK=1 /UG=Rn.2315 /LL=64028 /UG_GENE=Tsnax /DEF=Rattus norvegicus trax mRNA, complete cds. /PROD=trax /FL=gb:NM_022262.1 gb:AF262357.1 AF262357 translin-associated factor X Tsnax 64028 NM_022262 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003697 // single-stranded DNA binding // traceable author statement /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // traceable author statement /// 0031687 // A2A adenosine receptor binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1398824_at NM_031722 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031722.1 /DB_XREF=gi:13929013 /GEN=Rnp24 /FEA=FLmRNA /CNT=14 /TID=Rn.22775.1 /TIER=FL /STK=1 /UG=Rn.22775 /LL=65165 /DEF=Rattus norvegicus coated vesicle membrane protein (Rnp24), mRNA. /PROD=coated vesicle membrane protein /FL=gb:NM_031722.1 NM_031722 transmembrane emp24 domain trafficking protein 2 Tmed2 65165 NM_031722 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // non-traceable author statement /// 0006903 // vesicle targeting // non-traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030663 // COPI coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042589 // zymogen granule membrane // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005515 // protein binding // not recorded 1398825_at D01046 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D01046.1 /DB_XREF=gi:2463535 /GEN=rab11-p24-B /FEA=FLmRNA /CNT=4 /TID=Rn.48670.1 /TIER=FL /STK=1 /UG=Rn.48670 /LL=79434 /DEF=Rattus norvegicus mRNA for GTP binding protein, complete cds. /PROD=GTP binding protein /FL=gb:AF286534.1 gb:D01046.1 gb:NM_032617.1 D01046 RAB11B, member RAS oncogene family Rab11b 79434 NM_032617 0006810 // transport // inferred from electronic annotation /// 0006928 // cellular component movement // non-traceable author statement /// 0007049 // cell cycle // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // not recorded /// 0005525 // GTP binding // inferred from sequence or structural similarity /// 0005525 // GTP binding // inferred from electronic annotation /// 0019003 // GDP binding // not recorded /// 0019003 // GDP binding // inferred from sequence or structural similarity /// 0019003 // GDP binding // inferred from electronic annotation 1398826_s_at NM_139113 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_139113.1 /DB_XREF=gi:20806166 /GEN=Nr2f6 /FEA=FLmRNA /CNT=1 /TID=Affx.1.27 /TIER=FL /STK=1 /NOTE=sequence(s) not in UniGene /DEF=Rattus norvegicus nuclear receptor subfamily 2, group F, member 6 (Nr2f6), mRNA. /PROD=nuclear receptor subfamily 2, group F, member 6 /FL=gb:NM_139113.1 NM_139113 nuclear receptor subfamily 2, group F, member 6 Nr2f6 245980 NM_139113 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0043153 // entrainment of circadian clock by photoperiod // inferred from electronic annotation /// 0043153 // entrainment of circadian clock by photoperiod // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0048666 // neuron development // inferred from electronic annotation /// 0048666 // neuron development // not recorded /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // inferred from electronic annotation /// 0050965 // detection of temperature stimulus involved in sensory perception of pain // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0004879 // ligand-dependent nuclear receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398827_at NM_013087 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_013087.1 /DB_XREF=gi:6978638 /GEN=Cd81 /FEA=FLmRNA /CNT=51 /TID=Rn.1975.1 /TIER=FL+Stack /STK=30 /UG=Rn.1975 /LL=25621 /DEF=Rattus norvegicus CD81 antigen (target of antiproliferative antibody 1) (Cd81), mRNA. /PROD=CD81 antigen (target of antiproliferativeantibody 1) /FL=gb:U19894.1 gb:NM_013087.1 NM_013087 Cd81 molecule Cd81 25621 NM_013087 0000187 // activation of MAPK activity // not recorded /// 0000187 // activation of MAPK activity // inferred from sequence or structural similarity /// 0006661 // phosphatidylinositol biosynthetic process // not recorded /// 0006661 // phosphatidylinositol biosynthetic process // inferred from sequence or structural similarity /// 0008104 // protein localization // not recorded /// 0008104 // protein localization // inferred from sequence or structural similarity /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008284 // positive regulation of cell proliferation // inferred from sequence or structural similarity /// 0009611 // response to wounding // inferred from expression pattern /// 0030384 // phosphoinositide metabolic process // not recorded /// 0030384 // phosphoinositide metabolic process // inferred from sequence or structural similarity /// 0040008 // regulation of growth // inferred from expression pattern /// 0042127 // regulation of cell proliferation // inferred from direct assay /// 0043128 // positive regulation of 1-phosphatidylinositol 4-kinase activity // not recorded /// 0043128 // positive regulation of 1-phosphatidylinositol 4-kinase activity // inferred from sequence or structural similarity /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // not recorded /// 0050731 // positive regulation of peptidyl-tyrosine phosphorylation // inferred from sequence or structural similarity 0005887 // integral to plasma membrane // not recorded /// 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1398828_at U09386 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U09386.1 /DB_XREF=gi:501063 /FEA=FLmRNA /CNT=64 /TID=Rn.80611.1 /TIER=FL+Stack /STK=26 /UG=Rn.80611 /LL=25639 /UG_GENE=Fkbp1a /DEF=Rattus norvegicus immunophilin FKBP12 mRNA, complete cds. /PROD=immunophilin FKBP12 /FL=gb:NM_013102.1 gb:D86641.1 gb:U09386.1 U09386 FK506 binding protein 1a Fkbp1a 25639 NM_013102 0001933 // negative regulation of protein phosphorylation // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0006457 // protein folding // inferred from electronic annotation /// 0006936 // muscle contraction // not recorded /// 0007183 // SMAD protein complex assembly // not recorded /// 0010039 // response to iron ion // inferred from expression pattern /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0031000 // response to caffeine // not recorded /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0032092 // positive regulation of protein binding // not recorded /// 0032513 // negative regulation of protein phosphatase type 2B activity // not recorded /// 0032925 // regulation of activin receptor signaling pathway // not recorded /// 0034205 // beta-amyloid formation // not recorded /// 0042098 // T cell proliferation // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043206 // fibril organization // not recorded /// 0050776 // regulation of immune response // not recorded /// 0051209 // release of sequestered calcium ion into cytosol // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0060314 // regulation of ryanodine-sensitive calcium-release channel activity // not recorded /// 0060347 // heart trabecula formation // not recorded 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0033017 // sarcoplasmic reticulum membrane // not recorded /// 0043679 // axon terminus // inferred from direct assay 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // not recorded /// 0004871 // signal transducer activity // not recorded /// 0005160 // transforming growth factor beta receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005528 // FK506 binding // inferred from direct assay /// 0005528 // FK506 binding // not recorded /// 0008144 // drug binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation /// 0034713 // type I transforming growth factor beta receptor binding // inferred from direct assay /// 0046332 // SMAD binding // not recorded /// 0048185 // activin binding // not recorded 1398829_at AI598372 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598372 /DB_XREF=gi:4607420 /DB_XREF=EST250075 /CLONE=REMDQ27 /FEA=FLmRNA /CNT=64 /TID=Rn.80611.1 /TIER=Stack /STK=19 /UG=Rn.80611 /LL=25639 /UG_GENE=Fkbp1a /UG_TITLE=FK506-binding protein 1 (12kD) /FL=gb:NM_013102.1 gb:D86641.1 gb:U09386.1 AI598372 FK506 binding protein 1a Fkbp1a 25639 NM_013102 0001933 // negative regulation of protein phosphorylation // not recorded /// 0003007 // heart morphogenesis // not recorded /// 0006457 // protein folding // inferred from electronic annotation /// 0006936 // muscle contraction // not recorded /// 0007183 // SMAD protein complex assembly // not recorded /// 0010039 // response to iron ion // inferred from expression pattern /// 0019221 // cytokine-mediated signaling pathway // not recorded /// 0031000 // response to caffeine // not recorded /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0032092 // positive regulation of protein binding // not recorded /// 0032513 // negative regulation of protein phosphatase type 2B activity // not recorded /// 0032925 // regulation of activin receptor signaling pathway // not recorded /// 0034205 // beta-amyloid formation // not recorded /// 0042098 // T cell proliferation // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043206 // fibril organization // not recorded /// 0050776 // regulation of immune response // not recorded /// 0051209 // release of sequestered calcium ion into cytosol // not recorded /// 0055010 // ventricular cardiac muscle tissue morphogenesis // not recorded /// 0060314 // regulation of ryanodine-sensitive calcium-release channel activity // not recorded /// 0060347 // heart trabecula formation // not recorded 0005624 // membrane fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0033017 // sarcoplasmic reticulum membrane // not recorded /// 0043679 // axon terminus // inferred from direct assay 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0003755 // peptidyl-prolyl cis-trans isomerase activity // not recorded /// 0004871 // signal transducer activity // not recorded /// 0005160 // transforming growth factor beta receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005528 // FK506 binding // inferred from direct assay /// 0005528 // FK506 binding // not recorded /// 0008144 // drug binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation /// 0034713 // type I transforming growth factor beta receptor binding // inferred from direct assay /// 0046332 // SMAD binding // not recorded /// 0048185 // activin binding // not recorded 1398830_at NM_022697 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_022697.1 /DB_XREF=gi:12083654 /GEN=Rpl28 /FEA=FLmRNA /CNT=31 /TID=Rn.36614.1 /TIER=FL+Stack /STK=23 /UG=Rn.36614 /LL=64638 /DEF=Rattus norvegicus ribosomal protein L28 (Rpl28), mRNA. /PROD=ribosomal protein L28 /FL=gb:NM_022697.1 NM_022697 ribosomal protein L28 Rpl28 64638 NM_022697 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398831_at NM_031629 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031629.1 /DB_XREF=gi:13928865 /GEN=Psmb4 /FEA=FLmRNA /CNT=37 /TID=Rn.6169.1 /TIER=FL+Stack /STK=20 /UG=Rn.6169 /LL=58854 /DEF=Rattus norvegicus proteasome (prosome, macropain) subunit, beta type, 4 (Psmb4), mRNA. /PROD=proteasome (prosome, macropain) subunit, betatype, 4 /FL=gb:NM_031629.1 gb:L17127.1 NM_031629 proteasome (prosome, macropain) subunit, beta type 4 Psmb4 58854 NM_031629 0002862 // negative regulation of inflammatory response to antigenic stimulus // inferred from electronic annotation /// 0002862 // negative regulation of inflammatory response to antigenic stimulus // not recorded /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005839 // proteasome core complex // inferred from electronic annotation /// 0045111 // intermediate filament cytoskeleton // inferred from electronic annotation /// 0045111 // intermediate filament cytoskeleton // not recorded 0001530 // lipopolysaccharide binding // inferred from electronic annotation /// 0001530 // lipopolysaccharide binding // not recorded /// 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1398832_at NM_012749 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_012749.1 /DB_XREF=gi:6981247 /GEN=Ncl /FEA=FLmRNA /CNT=33 /TID=Rn.7735.1 /TIER=FL+Stack /STK=20 /UG=Rn.7735 /LL=25135 /DEF=Rattus norvegicus Nucleolin (Ncl), mRNA. /PROD=nucleolin /FL=gb:NM_012749.1 NM_012749 nucleolin Ncl 25135 NM_012749 0001525 // angiogenesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0042162 // telomeric DNA binding // not recorded /// 0042162 // telomeric DNA binding // inferred from sequence or structural similarity 1398833_at NM_053569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053569.1 /DB_XREF=gi:16758341 /GEN=Mbtps1 /FEA=FLmRNA /CNT=22 /TID=Rn.2362.1 /TIER=FL+Stack /STK=16 /UG=Rn.2362 /LL=89842 /DEF=Rattus norvegicus membrane-bound transcription factor protease, site 1 (Mbtps1), mRNA. /PROD=membrane-bound transcription factor protease,site 1 /FL=gb:NM_053569.1 gb:AF094821.1 NM_053569 membrane-bound transcription factor peptidase, site 1 Mbtps1 89842 NM_053569 0006508 // proteolysis // inferred from electronic annotation /// 0006629 // lipid metabolic process // not recorded /// 0006629 // lipid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation /// 0042990 // regulation of transcription factor import into nucleus // inferred from electronic annotation /// 0042990 // regulation of transcription factor import into nucleus // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // inferred from electronic annotation /// 0005795 // Golgi stack // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004175 // endopeptidase activity // not recorded /// 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from direct assay /// 0004252 // serine-type endopeptidase activity // not recorded /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1398834_at D14592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D14592.1 /DB_XREF=gi:286229 /GEN=MEK2 /FEA=FLmRNA /CNT=20 /TID=Rn.82693.1 /TIER=FL+Stack /STK=11 /UG=Rn.82693 /LL=58960 /DEF=Rat mRNA for MAP kinase kinase-related protein, complete cds. /PROD=MAP kinase kinase-related protein /FL=gb:NM_133283.1 gb:D14592.1 gb:L14936.1 D14592 mitogen activated protein kinase kinase 2 Map2k2 58960 NM_133283 0000165 // MAPKKK cascade // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // not recorded /// 0007265 // Ras protein signal transduction // not recorded 0005625 // soluble fraction // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004708 // MAP kinase kinase activity // inferred from direct assay /// 0004708 // MAP kinase kinase activity // inferred from mutant phenotype /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1398835_at NM_031144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031144.1 /DB_XREF=gi:13592132 /GEN=Actx /FEA=FLmRNA /CNT=133 /TID=Rn.69.1 /TIER=FL+Stack /STK=9 /UG=Rn.69 /LL=81822 /DEF=Rattus norvegicus cytoplasmic beta-actin (Actx), mRNA. /PROD=cytoplasmic beta-actin /FL=gb:NM_031144.1 NM_031144 actin, beta Actb 81822 NM_031144 0007409 // axonogenesis // inferred from direct assay /// 0051592 // response to calcium ion // inferred from expression pattern 0005625 // soluble fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded /// 0030863 // cortical cytoskeleton // not recorded /// 0035267 // NuA4 histone acetyltransferase complex // inferred from electronic annotation /// 0035267 // NuA4 histone acetyltransferase complex // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0070688 // MLL5-L complex // inferred from electronic annotation /// 0070688 // MLL5-L complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from electronic annotation /// 0019894 // kinesin binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from electronic annotation /// 0050998 // nitric-oxide synthase binding // inferred from electronic annotation /// 0050998 // nitric-oxide synthase binding // not recorded 1398836_s_at NM_031144 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031144.1 /DB_XREF=gi:13592132 /GEN=Actx /FEA=FLmRNA /CNT=133 /TID=Rn.69.1 /TIER=FL+Stack /STK=9 /UG=Rn.69 /LL=81822 /DEF=Rattus norvegicus cytoplasmic beta-actin (Actx), mRNA. /PROD=cytoplasmic beta-actin /FL=gb:NM_031144.1 NM_031144 actin, beta Actb 81822 NM_031144 0007409 // axonogenesis // inferred from direct assay /// 0051592 // response to calcium ion // inferred from expression pattern 0005625 // soluble fraction // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded /// 0030863 // cortical cytoskeleton // not recorded /// 0035267 // NuA4 histone acetyltransferase complex // inferred from electronic annotation /// 0035267 // NuA4 histone acetyltransferase complex // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0070688 // MLL5-L complex // inferred from electronic annotation /// 0070688 // MLL5-L complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from electronic annotation /// 0019894 // kinesin binding // not recorded /// 0019901 // protein kinase binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred from electronic annotation /// 0050998 // nitric-oxide synthase binding // inferred from electronic annotation /// 0050998 // nitric-oxide synthase binding // not recorded 1398837_at NM_031129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_031129.1 /DB_XREF=gi:13592104 /GEN=TCEB2 /FEA=FLmRNA /CNT=18 /TID=Rn.17081.1 /TIER=FL+Stack /STK=9 /UG=Rn.17081 /LL=81807 /DEF=Rattus norvegicus transcription elongation factor B (SIII) polypeptide 2 (18kD, elongin B) (TCEB2), mRNA. /PROD=transcription elongation factor B (SIII)polypeptide 2 (18kD, elongin B) /FL=gb:L42855.1 gb:NM_031129.1 NM_031129 transcription elongation factor B (SIII), polypeptide 2 Tceb2 81807 NM_031129 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005667 // transcription factor complex // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0030891 // VCB complex // inferred from direct assay 0004842 // ubiquitin-protein ligase activity // inferred by curator /// 0005515 // protein binding // inferred by curator /// 0005515 // protein binding // not recorded /// 0016251 // general RNA polymerase II transcription factor activity // traceable author statement 1398838_at NM_023950 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_023950.1 /DB_XREF=gi:13027391 /GEN=Rab7 /FEA=FLmRNA /CNT=48 /TID=Rn.1425.1 /TIER=FL+Stack /STK=7 /UG=Rn.1425 /LL=29448 /DEF=Rattus norvegicus RAB7, member RAS oncogene family (Rab7), mRNA. /PROD=RAB7, member RAS oncogene family /FL=gb:AF286535.1 gb:NM_023950.1 NM_023950 RAB7A, member RAS oncogene family Rab7a 29448 NM_023950 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0045453 // bone resorption // inferred from mutant phenotype 0005737 // cytoplasm // not recorded /// 0005764 // lysosome // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005770 // late endosome // not recorded /// 0005770 // late endosome // traceable author statement /// 0005770 // late endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0045335 // phagocytic vesicle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation 1398839_at NM_053800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053800.1 /DB_XREF=gi:16758643 /GEN=Txn /FEA=FLmRNA /CNT=79 /TID=Rn.29777.1 /TIER=FL+Stack /STK=6 /UG=Rn.29777 /LL=116484 /DEF=Rattus norvegicus thioredoxin (Txn), mRNA. /PROD=thioredoxin /FL=gb:NM_053800.1 gb:AF311055.1 NM_053800 thioredoxin 1 Txn1 116484 NM_053800 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0008152 // metabolic process // not recorded /// 0022900 // electron transport chain // inferred from electronic annotation /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0045454 // cell redox homeostasis // not recorded /// 0046826 // negative regulation of protein export from nucleus // inferred from electronic annotation /// 0046826 // negative regulation of protein export from nucleus // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from electronic annotation /// 0005829 // cytosol // not recorded 0004791 // thioredoxin-disulfide reductase activity // traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0015037 // peptide disulfide oxidoreductase activity // inferred from electronic annotation /// 0015037 // peptide disulfide oxidoreductase activity // not recorded 1398840_at NM_053555 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_053555.1 /DB_XREF=gi:16758325 /GEN=Vamp5 /FEA=FLmRNA /CNT=7 /TID=Rn.22616.1 /TIER=FL /STK=0 /UG=Rn.22616 /LL=89818 /DEF=Rattus norvegicus vesicle-associated membrane protein 5 (Vamp5), mRNA. /PROD=vesicle-associated membrane protein 5 /FL=gb:NM_053555.1 gb:AF054826.1 NM_053555 vesicle-associated membrane protein 5 Vamp5 89818 NM_053555 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007517 // muscle organ development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1398841_at AI411122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411122 /DB_XREF=gi:4254626 /DB_XREF=EST239416 /CLONE=RKIET69 /FEA=FLmRNA /CNT=40 /TID=Rn.2587.1 /TIER=Stack /STK=23 /UG=Rn.2587 /LL=81754 /UG_GENE=Rab1 /UG_TITLE=ras-related protein /FL=gb:NM_031090.1 AI411122 RAB1, member RAS oncogene family Rab1 81754 NM_031090 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from direct assay /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0032482 // Rab protein signal transduction // inferred by curator 0005625 // soluble fraction // inferred from direct assay /// 0005626 // insoluble fraction // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0043025 // neuronal cell body // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation 1398842_at BM386513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386513 /DB_XREF=gi:18186566 /DB_XREF=UI-R-CN1-cjg-o-03-0-UI.s1 /CLONE=UI-R-CN1-cjg-o-03-0-UI /FEA=FLmRNA /CNT=49 /TID=Rn.3589.1 /TIER=Stack /STK=19 /UG=Rn.3589 /LL=54241 /UG_GENE=Cltc /UG_TITLE=clathrin, heavy polypeptide (Hc) /FL=gb:J03583.1 gb:NM_019299.1 BM386513 clathrin, heavy chain (Hc) Cltc 54241 NM_019299 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0006898 // receptor-mediated endocytosis // inferred from mutant phenotype /// 0006898 // receptor-mediated endocytosis // not recorded /// 0007030 // Golgi organization // inferred from mutant phenotype /// 0007067 // mitosis // inferred from mutant phenotype /// 0007067 // mitosis // not recorded /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0031623 // receptor internalization // not recorded /// 0033572 // transferrin transport // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005819 // spindle // inferred from direct assay /// 0005819 // spindle // not recorded /// 0005886 // plasma membrane // not recorded /// 0005905 // coated pit // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // not recorded /// 0030118 // clathrin coat // inferred from direct assay /// 0030118 // clathrin coat // traceable author statement /// 0030130 // clathrin coat of trans-Golgi network vesicle // inferred from electronic annotation /// 0030132 // clathrin coat of coated pit // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // not recorded /// 0030315 // T-tubule // inferred from direct assay /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0030669 // clathrin-coated endocytic vesicle membrane // not recorded /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0042383 // sarcolemma // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0030506 // ankyrin binding // inferred from direct assay /// 0031072 // heat shock protein binding // inferred from direct assay /// 0042277 // peptide binding // inferred from direct assay 1398843_at AI411103 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411103 /DB_XREF=gi:4254607 /DB_XREF=EST239397 /CLONE=RKIET26 /FEA=FLmRNA /CNT=35 /TID=Rn.17540.1 /TIER=Stack /STK=18 /UG=Rn.17540 /LL=58857 /UG_GENE=Vapa /UG_TITLE=vesicle-associated membrane protein, associated protein A (33 kDa) /FL=gb:AF086630.1 gb:NM_031631.1 AI411103 VAMP (vesicle-associated membrane protein)-associated protein A Vapa 58857 NM_031631 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0005874 // microtubule // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005923 // tight junction // not recorded /// 0012505 // endomembrane system // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031982 // vesicle // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0004871 // signal transducer activity // not recorded /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from direct assay /// 0046982 // protein heterodimerization activity // not recorded 1398844_at AA800180 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800180 /DB_XREF=gi:2863135 /DB_XREF=EST189677 /CLONE=RHEAM15 /FEA=FLmRNA /CNT=38 /TID=Rn.55043.1 /TIER=Stack /STK=17 /UG=Rn.55043 /LL=79462 /UG_GENE=Txn2 /UG_TITLE=thioredoxin 2 /FL=gb:U73525.1 gb:NM_053331.1 AA800180 thioredoxin 2 Txn2 79462 NM_053331 0001666 // response to hypoxia // inferred from expression pattern /// 0006662 // glycerol ether metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from expression pattern /// 0007584 // response to nutrient // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0014070 // response to organic cyclic substance // inferred from expression pattern /// 0022900 // electron transport chain // inferred from electronic annotation /// 0031669 // cellular response to nutrient levels // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern /// 0045454 // cell redox homeostasis // inferred from electronic annotation /// 0048678 // response to axon injury // inferred from expression pattern 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0008113 // peptide-methionine-(S)-S-oxide reductase activity // inferred from direct assay /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreductase activity // inferred from direct assay /// 0015035 // protein disulfide oxidoreductase activity // inferred from electronic annotation /// 0032403 // protein complex binding // inferred from physical interaction /// 0033743 // peptide-methionine (R)-S-oxide reductase activity // inferred from direct assay 1398845_at BF282186 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282186 /DB_XREF=gi:11213256 /DB_XREF=EST446777 /CLONE=RGIDF38 /FEA=FLmRNA /CNT=77 /TID=Rn.40123.1 /TIER=Stack /STK=16 /UG=Rn.40123 /LL=56783 /UG_GENE=Eif5 /UG_TITLE=eukaryotic initiation factor 5 (eIF-5) /FL=gb:L11651.1 gb:NM_020075.1 BF282186 eukaryotic translation initiation factor 5 Eif5 56783 NM_020075 0006412 // translation // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation /// 0016070 // RNA metabolic process // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1398846_at BE107346 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107346 /DB_XREF=gi:8499451 /DB_XREF=UI-R-BS1-ays-f-10-0-UI.s1 /CLONE=UI-R-BS1-ays-f-10-0-UI /FEA=FLmRNA /CNT=77 /TID=Rn.40123.1 /TIER=Stack /STK=14 /UG=Rn.40123 /LL=56783 /UG_GENE=Eif5 /UG_TITLE=eukaryotic initiation factor 5 (eIF-5) /FL=gb:L11651.1 gb:NM_020075.1 BE107346 eukaryotic translation initiation factor 5 Eif5 56783 NM_020075 0006412 // translation // traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation /// 0016070 // RNA metabolic process // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from direct assay /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1398847_at BG376935 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG376935 /DB_XREF=gi:13301407 /DB_XREF=UI-R-CU0-bvl-b-12-0-UI.s1 /CLONE=UI-R-CU0-bvl-b-12-0-UI /FEA=FLmRNA /CNT=67 /TID=Rn.8426.1 /TIER=Stack /STK=9 /UG=Rn.8426 /LL=94267 /UG_GENE=Nudt4 /UG_TITLE=diphosphoinositol polyphosphate phosphohydolase type II /FL=gb:NM_053598.1 gb:AF253473.1 BG376935 nudix (nucleoside diphosphate linked moiety X)-type motif 4 Nudt4 94267 NM_053598 0030384 // phosphoinositide metabolic process // non-traceable author statement 0005737 // cytoplasm // inferred from electronic annotation 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // not recorded /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // inferred from sequence or structural similarity /// 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398848_at BG377057 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377057 /DB_XREF=gi:13301529 /DB_XREF=UI-R-CS0-bvm-h-06-0-UI.s1 /CLONE=UI-R-CS0-bvm-h-06-0-UI /FEA=FLmRNA /CNT=15 /TID=Rn.8796.1 /TIER=Stack /STK=9 /UG=Rn.8796 /LL=81800 /UG_GENE=St13 /UG_TITLE=suppression of tumorigenicity 13 (colon carcinoma) Hsp70-interacting protein /FL=gb:NM_031122.1 BG377057 suppression of tumorigenicity 13 St13 81800 NM_031122 0006457 // protein folding // inferred from direct assay /// 0051260 // protein homooligomerization // inferred from direct assay /// 0061084 // negative regulation of protein refolding // inferred from direct assay /// 0070389 // chaperone cofactor-dependent protein refolding // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from direct assay /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0030544 // Hsp70 protein binding // inferred from direct assay /// 0030544 // Hsp70 protein binding // inferred from physical interaction /// 0032403 // protein complex binding // inferred from direct assay /// 0032564 // dATP binding // inferred from direct assay /// 0042802 // identical protein binding // inferred from direct assay /// 0051082 // unfolded protein binding // inferred from direct assay /// 0051087 // chaperone binding // inferred from physical interaction 1398849_at AI177503 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177503 /DB_XREF=gi:3728141 /DB_XREF=EST221135 /CLONE=RPLCA81 /FEA=FLmRNA /CNT=42 /TID=Rn.29857.1 /TIER=Stack /STK=7 /UG=Rn.29857 /LL=117056 /UG_GENE=H3f3b /UG_TITLE=H3 histone, family 3B /FL=gb:NM_053985.1 AI177503 H3 histone, family 3B H3f3b 117056 NM_053985 0006334 // nucleosome assembly // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1398850_at BG671399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671399 /DB_XREF=gi:13893498 /DB_XREF=DRNBQF02 /CLONE=DRNBQF02 /FEA=FLmRNA /CNT=179 /TID=Rn.1463.1 /TIER=Stack /STK=15 /UG=Rn.1463 /LL=25518 /UG_GENE=Ppia /UG_TITLE=Peptidylprolyl isomerase A (cyclophilin A) /FL=gb:M19533.1 gb:NM_017101.1 BG671399 peptidylprolyl isomerase A (cyclophilin A) Ppia 25518 NM_017101 0006457 // protein folding // inferred from electronic annotation /// 0019047 // provirus integration // not recorded /// 0019059 // initiation of viral infection // not recorded /// 0030182 // neuron differentiation // not recorded /// 0045069 // regulation of viral genome replication // not recorded /// 0045069 // regulation of viral genome replication // inferred from sequence or structural similarity 0005576 // extracellular region // not recorded /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005829 // cytosol // inferred from sequence or structural similarity 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016853 // isomerase activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from electronic annotation 1398851_at AA892351 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892351 /DB_XREF=gi:3019230 /DB_XREF=EST196154 /CLONE=RKIAP40 /FEA=FLmRNA /CNT=72 /TID=Rn.4225.1 /TIER=Stack /STK=11 /UG=Rn.4225 /LL=29753 /UG_GENE=Ywhae /UG_TITLE=tyrosine 3-monooxygenasetryptophan 5-monooxygenase activatioprotein, epsilon polypeptide /FL=gb:U53882.1 gb:M84416.1 gb:NM_031603.1 AA892351 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide Ywhae 29753 NM_031603 0001764 // neuron migration // inferred from electronic annotation /// 0001764 // neuron migration // not recorded /// 0006605 // protein targeting // inferred from electronic annotation /// 0006605 // protein targeting // not recorded /// 0006915 // apoptosis // not recorded /// 0007165 // signal transduction // traceable author statement /// 0008624 // induction of apoptosis by extracellular signals // not recorded /// 0021766 // hippocampus development // inferred from electronic annotation /// 0021766 // hippocampus development // not recorded /// 0021987 // cerebral cortex development // inferred from electronic annotation /// 0021987 // cerebral cortex development // not recorded /// 0035308 // negative regulation of protein dephosphorylation // inferred from electronic annotation /// 0035308 // negative regulation of protein dephosphorylation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded /// 0005871 // kinesin complex // inferred from direct assay /// 0033267 // axon part // inferred from direct assay /// 0042470 // melanosome // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008426 // protein kinase C inhibitor activity // traceable author statement /// 0019899 // enzyme binding // inferred from physical interaction /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0032403 // protein complex binding // inferred from physical interaction /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded /// 0050815 // phosphoserine binding // inferred from electronic annotation /// 0050815 // phosphoserine binding // not recorded /// 0051219 // phosphoprotein binding // inferred from electronic annotation /// 0051219 // phosphoprotein binding // not recorded 1398852_at BF410811 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410811 /DB_XREF=gi:11398786 /DB_XREF=UI-R-CN0-bml-c-07-0-UI.s1 /CLONE=UI-R-CN0-bml-c-07-0-UI /FEA=FLmRNA /CNT=48 /TID=Rn.4153.1 /TIER=Stack /STK=10 /UG=Rn.4153 /LL=81775 /UG_GENE=Rps21 /UG_TITLE=ribosomal protein S21 /FL=gb:NM_031111.1 BF410811 ribosomal protein S21 Rps21 81775 NM_031111 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // not recorded /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0043022 // ribosome binding // inferred from sequence or structural similarity /// 0047485 // protein N-terminus binding // not recorded 1398853_at AI169273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169273 /DB_XREF=gi:3705581 /DB_XREF=EST215108 /CLONE=RKIBP59 /FEA=FLmRNA /CNT=48 /TID=Rn.232.1 /TIER=Stack /STK=8 /UG=Rn.232 /LL=29676 /UG_GENE=Psmb3 /UG_TITLE=proteasome (prosome, macropain) subunit, beta type, 3 /FL=gb:NM_017285.1 AI169273 proteasome (prosome, macropain) subunit, beta type 3 Psmb3 29676 NM_017285 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005839 // proteasome core complex // inferred from electronic annotation /// 0005839 // proteasome core complex // not recorded 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1398854_at BI297634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI297634 /DB_XREF=gi:14973914 /DB_XREF=UI-R-CV2-cgy-e-06-0-UI.s1 /CLONE=UI-R-CV2-cgy-e-06-0-UI /FEA=FLmRNA /CNT=73 /TID=Rn.1214.1 /TIER=Stack /STK=7 /UG=Rn.1214 /LL=64307 /UG_GENE=Rpl24 /UG_TITLE=ribosomal protein L24 /FL=gb:NM_022515.1 BI297634 ribosomal protein L24 Rpl24 64307 NM_022515 0000027 // ribosomal large subunit assembly // inferred from electronic annotation /// 0000027 // ribosomal large subunit assembly // not recorded /// 0006412 // translation // inferred by curator /// 0006412 // translation // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0010458 // exit from mitosis // inferred from electronic annotation /// 0010458 // exit from mitosis // not recorded /// 0021554 // optic nerve development // inferred from electronic annotation /// 0021554 // optic nerve development // not recorded /// 0031290 // retinal ganglion cell axon guidance // inferred from electronic annotation /// 0031290 // retinal ganglion cell axon guidance // not recorded /// 0031575 // mitotic cell cycle G1/S transition checkpoint // inferred from electronic annotation /// 0031575 // mitotic cell cycle G1/S transition checkpoint // not recorded /// 0060041 // retina development in camera-type eye // inferred from electronic annotation /// 0060041 // retina development in camera-type eye // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from direct assay /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398855_at AA893531 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893531 /DB_XREF=gi:3020410 /DB_XREF=EST197334 /CLONE=RLIAD59 /FEA=FLmRNA /CNT=61 /TID=Rn.3689.1 /TIER=Stack /STK=6 /UG=Rn.3689 /LL=171375 /UG_GENE=Atp5f1 /UG_TITLE=ATP synthase, H+ transporting, mitochondrial F0 complex, subunit b, isoform 1 /FL=gb:M35052.1 gb:NM_134365.1 AA893531 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1 Atp5f1 171375 NM_134365 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0046034 // ATP metabolic process // inferred from direct assay 0000276 // mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) // inferred from direct assay /// 0000276 // mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005753 // mitochondrial proton-transporting ATP synthase complex // not recorded /// 0005753 // mitochondrial proton-transporting ATP synthase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0045263 // proton-transporting ATP synthase complex, coupling factor F(o) // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded 1398856_at AA801204 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA801204 /DB_XREF=gi:2864159 /DB_XREF=EST190701 /CLONE=RPLAB21 /FEA=FLmRNA /CNT=63 /TID=Rn.1617.1 /TIER=Stack /STK=6 /UG=Rn.1617 /LL=29669 /UG_GENE=Psma2 /UG_TITLE=proteasome (prosome, macropain) subunit, alpha type 2 /FL=gb:J02897.1 gb:NM_017279.1 AA801204 proteasome (prosome, macropain) subunit, alpha type 2 Psma2 29669 NM_017279 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0009615 // response to virus // not recorded /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005839 // proteasome core complex // inferred from electronic annotation /// 0019773 // proteasome core complex, alpha-subunit complex // inferred from electronic annotation 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1398857_at AF182952 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF182952.1 /DB_XREF=gi:6630870 /GEN=Surf1 /FEA=FLmRNA /CNT=30 /TID=Rn.8091.1 /TIER=FL+Stack /STK=27 /UG=Rn.8091 /LL=64463 /DEF=Rattus norvegicus Surfeit 1 (Surf1) mRNA, complete cds. /PROD=Surfeit 1 /FL=gb:AF182952.1 AF182952 surfeit 1 Surf1 64463 NM_172068 0008152 // metabolic process // not recorded /// 0015992 // proton transport // not recorded /// 0034220 // ion transmembrane transport // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004129 // cytochrome-c oxidase activity // inferred from electronic annotation /// 0004129 // cytochrome-c oxidase activity // not recorded 1398858_at D37934 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:D37934.1 /DB_XREF=gi:531260 /FEA=FLmRNA /CNT=33 /TID=Rn.29909.1 /TIER=FL+Stack /STK=22 /UG=Rn.29909 /DEF=Rat mRNA for 5E5 antigen, complete cds. /PROD=5E5 antigen /FL=gb:D37934.1 D37934 proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 Psmd2 287984 NM_001031639 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0042176 // regulation of protein catabolic process // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0030234 // enzyme regulator activity // inferred from electronic annotation 1398859_at U90725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U90725.1 /DB_XREF=gi:4099875 /FEA=FLmRNA /CNT=31 /TID=Rn.8515.1 /TIER=FL+Stack /STK=17 /UG=Rn.8515 /LL=64474 /UG_GENE=Hdlbp /DEF=Rattus norvegicus lipoprotein-binding protein mRNA, complete cds. /PROD=lipoprotein-binding protein /FL=gb:U90725.1 U90725 high density lipoprotein binding protein Hdlbp 64474 NM_172039 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0008202 // steroid metabolic process // inferred from electronic annotation /// 0008203 // cholesterol metabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0034364 // high-density lipoprotein particle // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398860_at AF095740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF095740.1 /DB_XREF=gi:3747104 /FEA=FLmRNA /CNT=29 /TID=Rn.2079.1 /TIER=FL+Stack /STK=16 /UG=Rn.2079 /LL=25490 /UG_GENE=Nedd8 /DEF=Rattus norvegicus ubiquitin-like protein mRNA, complete cds. /PROD=ubiquitin-like protein /FL=gb:AF095740.1 AF095740 neural precursor cell expressed, developmentally down-regulated 8 Nedd8 25490 NM_138878 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0014070 // response to organic cyclic substance // inferred from direct assay /// 0045116 // protein neddylation // inferred from direct assay /// 0045116 // protein neddylation // not recorded /// 0045116 // protein neddylation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1398861_at AF093139 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF093139.1 /DB_XREF=gi:3719432 /GEN=TAP /FEA=FLmRNA /CNT=19 /TID=Rn.40138.1 /TIER=FL+Stack /STK=14 /UG=Rn.40138 /LL=59087 /DEF=Rattus norvegicus tip associating protein (TAP) mRNA, complete cds. /PROD=tip associating protein /FL=gb:AF093139.1 AF093139 nuclear RNA export factor 1 Nxf1 59087 NM_021579 0006405 // RNA export from nucleus // not recorded /// 0006405 // RNA export from nucleus // inferred from electronic annotation /// 0006406 // mRNA export from nucleus // not recorded /// 0006406 // mRNA export from nucleus // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0016973 // poly(A)+ mRNA export from nucleus // inferred from electronic annotation /// 0016973 // poly(A)+ mRNA export from nucleus // not recorded /// 0051028 // mRNA transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005643 // nuclear pore // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation /// 0042405 // nuclear inclusion body // inferred from electronic annotation /// 0042405 // nuclear inclusion body // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0003723 // RNA binding // traceable author statement /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0005487 // nucleocytoplasmic transporter activity // inferred from electronic annotation /// 0005487 // nucleocytoplasmic transporter activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398862_at J04024 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J04024.1 /DB_XREF=gi:203060 /FEA=FLmRNA /CNT=52 /TID=Rn.2305.3 /TIER=FL /STK=3 /UG=Rn.2305 /LL=29693 /UG_GENE=Atp2a2 /UG_TITLE=ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 /DEF=Rat alternative brain Ca+2-ATPase mRNA, complete cds. /FL=gb:J04024.1 J04024 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 Atp2a2 29693 NM_001110139 /// NM_001110823 /// NR_027839 0002026 // regulation of the force of heart contraction // inferred from electronic annotation /// 0002026 // regulation of the force of heart contraction // not recorded /// 0006200 // ATP catabolic process // not recorded /// 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006812 // cation transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006874 // cellular calcium ion homeostasis // not recorded /// 0006937 // regulation of muscle contraction // traceable author statement /// 0006984 // ER-nucleus signaling pathway // inferred from electronic annotation /// 0006984 // ER-nucleus signaling pathway // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0043434 // response to peptide hormone stimulus // inferred from direct assay /// 0045822 // negative regulation of heart contraction // inferred from electronic annotation /// 0045822 // negative regulation of heart contraction // not recorded /// 0070588 // calcium ion transmembrane transport // not recorded 0005624 // membrane fraction // inferred from electronic annotation /// 0005624 // membrane fraction // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // not recorded /// 0016529 // sarcoplasmic reticulum // traceable author statement /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0033017 // sarcoplasmic reticulum membrane // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // inferred from direct assay /// 0005388 // calcium-transporting ATPase activity // inferred from electronic annotation /// 0005388 // calcium-transporting ATPase activity // not recorded /// 0005509 // calcium ion binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0031775 // lutropin-choriogonadotropic hormone receptor binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation /// 0048155 // S100 alpha binding // inferred from electronic annotation /// 0048155 // S100 alpha binding // not recorded 1398863_at AF277892 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF277892.1 /DB_XREF=gi:8927569 /FEA=FLmRNA /CNT=8 /TID=Rn.44509.1 /TIER=FL /STK=2 /UG=Rn.44509 /DEF=Rattus norvegicus G-protein beta-2 subunit mRNA, complete cds. /PROD=G-protein beta-2 subunit /FL=gb:U34959.1 gb:AF277892.1 AF277892 guanine nucleotide binding protein (G protein), beta polypeptide 2 Gnb2 81667 NM_031037 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from mutant phenotype /// 0007186 // G-protein coupled receptor protein signaling pathway // traceable author statement /// 0007200 // activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger // inferred from electronic annotation /// 0007204 // elevation of cytosolic calcium ion concentration // inferred from mutant phenotype /// 0008283 // cell proliferation // inferred from electronic annotation /// 0009755 // hormone-mediated signaling pathway // not recorded /// 0050909 // sensory perception of taste // inferred from electronic annotation 0001750 // photoreceptor outer segment // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0005834 // heterotrimeric G-protein complex // inferred from mutant phenotype /// 0005834 // heterotrimeric G-protein complex // traceable author statement /// 0043234 // protein complex // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0001664 // G-protein-coupled receptor binding // inferred from mutant phenotype /// 0003924 // GTPase activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005246 // calcium channel regulator activity // inferred from mutant phenotype /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0031702 // type 1 angiotensin receptor binding // inferred from mutant phenotype 1398864_at BM389287 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389287 /DB_XREF=gi:18189340 /DB_XREF=UI-R-DZ0-cko-f-14-0-UI.s1 /CLONE=UI-R-DZ0-cko-f-14-0-UI /FEA=FLmRNA /CNT=34 /TID=Rn.8202.1 /TIER=Stack /STK=11 /UG=Rn.8202 /LL=64631 /UG_GENE=Ubc7 /UG_TITLE=ubiquitin-conjugating enzyme UBC7 /FL=gb:AF099093.1 BM389287 ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, yeast) Ube2g1 64631 NM_022690 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0016567 // protein ubiquitination // traceable author statement /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070534 // protein K63-linked ubiquitination // not recorded /// 0070534 // protein K63-linked ubiquitination // inferred from sequence or structural similarity /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0070936 // protein K48-linked ubiquitination // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1398865_at U96638 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U96638.1 /DB_XREF=gi:2735549 /GEN=UNCL /FEA=FLmRNA /CNT=18 /TID=Rn.3446.1 /TIER=FL+Stack /STK=11 /UG=Rn.3446 /DEF=Rattus norvegicus unc-50 related protein (UNCL) mRNA, complete cds. /PROD=unc-50 related protein /FL=gb:U96638.1 U96638 unc-50 homolog (C. elegans) Unc50 192356 NM_138919 0006810 // transport // inferred from electronic annotation /// 0007166 // cell surface receptor linked signaling pathway // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation 0000139 // Golgi membrane // inferred from direct assay /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005637 // nuclear inner membrane // inferred from direct assay /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0003723 // RNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from mutant phenotype /// 0003723 // RNA binding // inferred from electronic annotation 1398866_at AF255614 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF255614.1 /DB_XREF=gi:7650496 /GEN=Slipr /FEA=FLmRNA /CNT=18 /TID=Rn.22579.1 /TIER=FL+Stack /STK=11 /UG=Rn.22579 /DEF=Rattus norvegicus scaffolding protein SLIPR (Slipr) mRNA, complete cds. /PROD=scaffolding protein SLIPR /FL=gb:AF255614.1 AF255614 membrane associated guanylate kinase, WW and PDZ domain containing 3 Magi3 245903 NM_139084 0005634 // nucleus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1398867_at AB020022 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AB020022.1 /DB_XREF=gi:7707409 /FEA=FLmRNA /CNT=17 /TID=Rn.19573.1 /TIER=FL+Stack /STK=10 /UG=Rn.19573 /UG_TITLE=Rattus norvegicus neuronal differentiation-related mRNA, complete cds /DEF=Rattus norvegicus neuronal differentiation-related mRNA, complete cds. /FL=gb:AB020022.1 AB020022 PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) Prpf19 246216 NM_139333 0000209 // protein polyubiquitination // inferred from electronic annotation /// 0000209 // protein polyubiquitination // not recorded /// 0000245 // spliceosome assembly // inferred from electronic annotation /// 0000245 // spliceosome assembly // not recorded /// 0001833 // inner cell mass cell proliferation // inferred from electronic annotation /// 0001833 // inner cell mass cell proliferation // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // inferred from electronic annotation /// 0045665 // negative regulation of neuron differentiation // not recorded /// 0048711 // positive regulation of astrocyte differentiation // inferred from electronic annotation /// 0048711 // positive regulation of astrocyte differentiation // not recorded 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005811 // lipid particle // inferred from electronic annotation /// 0005811 // lipid particle // not recorded /// 0005819 // spindle // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0034450 // ubiquitin-ubiquitin ligase activity // inferred from electronic annotation /// 0034450 // ubiquitin-ubiquitin ligase activity // not recorded /// 0042802 // identical protein binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1398868_at AI408157 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408157 /DB_XREF=gi:4251661 /DB_XREF=EST236447 /CLONE=ROVEH25 /FEA=FLmRNA /CNT=29 /TID=Rn.2109.1 /TIER=Stack /STK=13 /UG=Rn.2109 /UG_TITLE=Rattus norvegicus small zinc finger-like protein (TIM13) mRNA, complete cds /FL=gb:AF144701.1 AI408157 translocase of inner mitochondrial membrane 13 homolog (yeast) Timm13 252928 NM_145781 0006626 // protein targeting to mitochondrion // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0045039 // protein import into mitochondrial inner membrane // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0042719 // mitochondrial intermembrane space protein transporter complex // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation 1398869_at BG378826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378826 /DB_XREF=gi:13303298 /DB_XREF=UI-R-CV1-bvt-c-09-0-UI.s1 /CLONE=UI-R-CV1-bvt-c-09-0-UI /FEA=FLmRNA /CNT=18 /TID=Rn.11341.1 /TIER=Stack /STK=13 /UG=Rn.11341 /LL=117262 /UG_GENE=Psmc4 /UG_TITLE=proteasome (prosome, macropain) 26S subunit, ATPase, 4 /FL=gb:D50695.1 BG378826 proteasome (prosome, macropain) 26S subunit, ATPase, 4 Psmc4 117262 NM_057122 0001824 // blastocyst development // inferred from electronic annotation /// 0001824 // blastocyst development // not recorded /// 0030163 // protein catabolic process // inferred from electronic annotation /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // traceable author statement /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1398870_at AI177295 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177295 /DB_XREF=gi:3727933 /DB_XREF=EST220912 /CLONE=RPLBX11 /FEA=FLmRNA /CNT=47 /TID=Rn.2143.1 /TIER=Stack /STK=10 /UG=Rn.2143 /UG_TITLE=Rattus norvegicus outer mitochondrial membrane receptor rTOM20 mRNA, complete cds /FL=gb:U21871.1 AI177295 translocase of outer mitochondrial membrane 20 homolog (yeast) Tomm20 266601 NM_152935 0006605 // protein targeting // inferred from electronic annotation /// 0006626 // protein targeting to mitochondrion // not recorded /// 0006626 // protein targeting to mitochondrion // inferred from sequence or structural similarity /// 0006626 // protein targeting to mitochondrion // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005740 // mitochondrial envelope // not recorded /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005742 // mitochondrial outer membrane translocase complex // non-traceable author statement /// 0005742 // mitochondrial outer membrane translocase complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // not recorded /// 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // traceable author statement /// 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from direct assay /// 0051082 // unfolded protein binding // not recorded /// 0051082 // unfolded protein binding // inferred from electronic annotation 1398871_at BG671311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671311 /DB_XREF=gi:13893410 /DB_XREF=DRNBOF05 /CLONE=DRNBOF05 /FEA=mRNA /CNT=74 /TID=Rn.34429.2 /TIER=Stack /STK=42 /UG=Rn.34429 /UG_TITLE=R.norvegicus ASI mRNA for mammalian equivalent of bacterial large ribosomal subunit protein L22 BG671311 ribosomal protein L17 Rpl17 291434 NM_201415 0006412 // translation // traceable author statement /// 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // traceable author statement /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // traceable author statement /// 0015934 // large ribosomal subunit // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // traceable author statement /// 0003735 // structural constituent of ribosome // inferred from electronic annotation 1398872_at BE107613 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107613 /DB_XREF=gi:8499718 /DB_XREF=UI-R-CA0-awv-g-01-0-UI.s1 /CLONE=UI-R-CA0-awv-g-01-0-UI /FEA=mRNA /CNT=57 /TID=Rn.4609.1 /TIER=Stack /STK=31 /UG=Rn.4609 /LL=161477 /UG_GENE=Rps13 /UG_TITLE=ribosomal protein S13 BE107613 ribosomal protein S13 Rps13 161477 NM_130432 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0033119 // negative regulation of RNA splicing // inferred from electronic annotation /// 0033119 // negative regulation of RNA splicing // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0022627 // cytosolic small ribosomal subunit // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003729 // mRNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398873_at BI279608 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279608 /DB_XREF=gi:14927597 /DB_XREF=UI-R-DE0-cae-f-05-0-UI.s1 /CLONE=UI-R-DE0-cae-f-05-0-UI /FEA=mRNA /CNT=40 /TID=Rn.33873.1 /TIER=Stack /STK=31 /UG=Rn.33873 /LL=80846 /UG_GENE=Hnrpl /UG_TITLE=heterogeneous nuclear ribonucleoprotein L BI279608 heterogeneous nuclear ribonucleoprotein L Hnrnpl 80846 NM_001134760 /// NM_032619 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0045120 // pronucleus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398874_at BI274345 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274345 /DB_XREF=gi:14885189 /DB_XREF=UI-R-CW0-bwh-g-11-0-UI.s1 /CLONE=UI-R-CW0-bwh-g-11-0-UI /FEA=mRNA /CNT=36 /TID=Rn.6524.1 /TIER=Stack /STK=22 /UG=Rn.6524 /LL=170821 /UG_GENE=Sca10 /UG_TITLE=spinocerebellar ataxia 10 homolog (human) BI274345 ataxin 10 Atxn10 170821 NM_133313 0007399 // nervous system development // not recorded /// 0031175 // neuron projection development // not recorded /// 0031175 // neuron projection development // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0030425 // dendrite // not recorded /// 0043025 // neuronal cell body // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // inferred from direct assay 1398875_at AI105044 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI105044 /DB_XREF=gi:3705104 /DB_XREF=EST214333 /CLONE=RHECM89 /FEA=mRNA /CNT=26 /TID=Rn.36878.2 /TIER=Stack /STK=19 /UG=Rn.36878 /LL=64640 /UG_GENE=Rpl30 /UG_TITLE=ribosomal protein L30 AI105044 polymerase (RNA) III (DNA directed) polypeptide K Polr3k 366277 NM_001014259 0006350 // transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398876_at BG380494 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380494 /DB_XREF=gi:13304966 /DB_XREF=UI-R-CT0-btx-h-07-0-UI.s1 /CLONE=UI-R-CT0-btx-h-07-0-UI /FEA=mRNA /CNT=25 /TID=Rn.14350.1 /TIER=Stack /STK=13 /UG=Rn.14350 /LL=85493 /UG_GENE=Abcf1 /UG_TITLE=ATP-binding cassette, sub-family F (GCN20), member 1 BG380494 ATP-binding cassette, sub-family F (GCN20), member 1 Abcf1 85493 NM_001109883 0006412 // translation // non-traceable author statement 0005840 // ribosome // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1398877_at BI283691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283691 /DB_XREF=gi:14935680 /DB_XREF=UI-R-CW0s-ccg-e-08-0-UI.s1 /CLONE=UI-R-CW0s-ccg-e-08-0-UI /FEA=mRNA /CNT=18 /TID=Rn.22614.1 /TIER=Stack /STK=13 /UG=Rn.22614 /UG_TITLE=Rattus norvegicus mRNA for Hsp70Hsp90 organizing protein BI283691 stress-induced phosphoprotein 1 Stip1 192277 NM_138911 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0030544 // Hsp70 protein binding // inferred from physical interaction /// 0051087 // chaperone binding // inferred from physical interaction 1398878_at Y17326 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:Y17326.1 /DB_XREF=gi:5931740 /GEN=CDK106 /FEA=mRNA /CNT=16 /TID=Rn.22470.1 /TIER=Stack /STK=9 /UG=Rn.22470 /DEF=Rattus norvegicus CDK106 mRNA. /PROD=zinc finger protein Y17326 cleavage and polyadenylation specific factor 4 Cpsf4 304277 NM_001012351 0006397 // mRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398879_at BE329031 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329031 /DB_XREF=gi:9202807 /DB_XREF=hq32h05.x1 /CLONE=IMAGE:3121113 /FEA=mRNA /CNT=6 /TID=Rn.38714.1 /TIER=ConsEnd /STK=4 /UG=Rn.38714 /UG_TITLE=Rattus norvegicus arrestin-E mRNA, partial cds BE329031 transmembrane protein 66 Tmem66 290796 NM_001004213 0050896 // response to stimulus // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1398880_at BM388890 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388890 /DB_XREF=gi:18188943 /DB_XREF=UI-R-DZ0-ckn-o-22-0-UI.s1 /CLONE=UI-R-DZ0-ckn-o-22-0-UI /FEA=mRNA /CNT=5 /TID=Rn.8706.1 /TIER=ConsEnd /STK=0 /UG=Rn.8706 /UG_TITLE=Rat unidentified mRNA expressed in embryo and tumor but not normal differentiated cells BM388890 SUB1 homolog (S. cerevisiae) Sub1 192269 NM_001009618 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398881_at AJ277077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ277077.2 /DB_XREF=gi:9843868 /GEN=DDB1 /FEA=mRNA /CNT=6 /TID=Rn.8402.1 /TIER=ConsEnd /STK=0 /UG=Rn.8402 /LL=64470 /DEF=Rattus norvegicus mRNA for damage-specific DNA binding protein 1 (DDB1 gene). /PROD=damage-specific DNA binding protein 1 AJ277077 damage-specific DNA binding protein 1 Ddb1 64470 XM_002725785 /// XM_002728866 0000075 // cell cycle checkpoint // inferred from electronic annotation /// 0000075 // cell cycle checkpoint // not recorded /// 0000718 // nucleotide-excision repair, DNA damage removal // not recorded /// 0006281 // DNA repair // traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0019005 // SCF ubiquitin ligase complex // inferred from electronic annotation /// 0031464 // Cul4A-RING ubiquitin ligase complex // not recorded /// 0031464 // Cul4A-RING ubiquitin ligase complex // inferred from sequence or structural similarity /// 0031465 // Cul4B-RING ubiquitin ligase complex // not recorded /// 0031465 // Cul4B-RING ubiquitin ligase complex // inferred from sequence or structural similarity 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398882_at BI282255 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282255 /DB_XREF=gi:14932842 /DB_XREF=UI-R-CU0s-cby-d-11-0-UI.s1 /CLONE=UI-R-CU0s-cby-d-11-0-UI /FEA=EST /CNT=84 /TID=Rn.2100.1 /TIER=Stack /STK=54 /UG=Rn.2100 /LL=25538 /UG_GENE=Rps5 /UG_TITLE=Ribosomal protein S5 BI282255 ribosomal protein S5 Rps5 25538 NM_001105722 0006412 // translation // inferred from electronic annotation /// 0006412 // translation // not recorded /// 0006414 // translational elongation // not recorded /// 0006450 // regulation of translational fidelity // inferred from electronic annotation /// 0006450 // regulation of translational fidelity // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015935 // small ribosomal subunit // inferred from electronic annotation /// 0022627 // cytosolic small ribosomal subunit // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // not recorded /// 0022627 // cytosolic small ribosomal subunit // inferred from sequence or structural similarity /// 0022627 // cytosolic small ribosomal subunit // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // not recorded 1398883_at BI296284 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296284 /DB_XREF=gi:14960575 /DB_XREF=UI-R-DK0-cey-e-09-0-UI.s1 /CLONE=UI-R-DK0-cey-e-09-0-UI /FEA=EST /CNT=54 /TID=Rn.4057.1 /TIER=Stack /STK=46 /UG=Rn.4057 /UG_TITLE=ESTs, Weakly similar to ROA1 RAT HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1 (R.norvegicus) BI296284 heterogeneous nuclear ribonucleoprotein A2/B1 Hnrnpa2b1 362361 NM_001104613 0006397 // mRNA processing // inferred from electronic annotation /// 0006397 // mRNA processing // not recorded /// 0008380 // RNA splicing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0050658 // RNA transport // inferred from electronic annotation /// 0050658 // RNA transport // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0005681 // spliceosomal complex // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0030530 // heterogeneous nuclear ribonucleoprotein complex // inferred from electronic annotation /// 0030530 // heterogeneous nuclear ribonucleoprotein complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0043047 // single-stranded telomeric DNA binding // inferred from electronic annotation /// 0043047 // single-stranded telomeric DNA binding // not recorded 1398884_at BM384924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384924 /DB_XREF=gi:18184977 /DB_XREF=UI-R-CN1-cjl-b-08-0-UI.s2 /CLONE=UI-R-CN1-cjl-b-08-0-UI /FEA=EST /CNT=45 /TID=Rn.3401.1 /TIER=Stack /STK=37 /UG=Rn.3401 /UG_TITLE=ESTs, Highly similar to PFD5_MOUSE PREFOLDIN SUBUNIT 5 (C-MYC BINDING PROTEIN MM-1) (MYC MODULATOR 1) (EIG-1) (M.musculus) BM384924 prefoldin subunit 5 Pfdn5 300257 NM_001106794 0006457 // protein folding // inferred from electronic annotation /// 0032582 // negative regulation of gene-specific transcription // not recorded /// 0090090 // negative regulation of canonical Wnt receptor signaling pathway // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0016272 // prefoldin complex // inferred from electronic annotation /// 0045111 // intermediate filament cytoskeleton // inferred from electronic annotation /// 0045111 // intermediate filament cytoskeleton // not recorded 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016566 // specific transcriptional repressor activity // not recorded /// 0051082 // unfolded protein binding // inferred from electronic annotation 1398885_at AA925327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA925327 /DB_XREF=gi:4236518 /DB_XREF=UI-R-A1-ek-h-05-0-UI.s1 /CLONE=UI-R-A1-ek-h-05-0-UI /FEA=EST /CNT=66 /TID=Rn.3973.2 /TIER=Stack /STK=36 /UG=Rn.3973 /LL=29283 /UG_GENE=Rpl29 /UG_TITLE=ribosomal protein L29 AA925327 ribosomal protein L23 Rpl23 29282 NM_001007599 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398886_at BI285703 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285703 /DB_XREF=gi:14939616 /DB_XREF=UI-R-CT0s-cas-e-11-0-UI.s1 /CLONE=UI-R-CT0s-cas-e-11-0-UI /FEA=EST /CNT=50 /TID=Rn.63.1 /TIER=Stack /STK=36 /UG=Rn.63 /UG_TITLE=ESTs BI285703 similar to Selenoprotein H RGD1563348 502642 NM_001114939 0045454 // cell redox homeostasis // inferred from electronic annotation 0008430 // selenium binding // inferred from electronic annotation 1398887_at BE113217 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113217 /DB_XREF=gi:8505322 /DB_XREF=UI-R-BJ1-awc-h-09-0-UI.s1 /CLONE=UI-R-BJ1-awc-h-09-0-UI /FEA=EST /CNT=38 /TID=Rn.8486.1 /TIER=Stack /STK=35 /UG=Rn.8486 /UG_TITLE=ESTs, Highly similar to GAMD_MOUSE GOLGI-ASSOCIATED MP1 ADAPTER PROTEIN (M.musculus) BE113217 roadblock domain containing 3 Robld3 295234 NM_001106441 0000186 // activation of MAPKK activity // not recorded 0005770 // late endosome // not recorded 0005515 // protein binding // not recorded 1398888_at AI408819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408819 /DB_XREF=gi:4252323 /DB_XREF=EST237110 /CLONE=RKIDP22 /FEA=EST /CNT=37 /TID=Rn.29857.2 /TIER=Stack /STK=31 /UG=Rn.29857 /LL=117056 /UG_GENE=H3f3b /UG_TITLE=H3 histone, family 3B AI408819 H3 histone, family 3B H3f3b 117056 NM_053985 0006334 // nucleosome assembly // inferred from electronic annotation /// 0007420 // brain development // inferred from expression pattern /// 0009725 // response to hormone stimulus // inferred from expression pattern 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation 1398889_at BE113383 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113383 /DB_XREF=gi:8505488 /DB_XREF=UI-R-BJ1-awe-g-02-0-UI.s1 /CLONE=UI-R-BJ1-awe-g-02-0-UI /FEA=EST /CNT=34 /TID=Rn.3796.3 /TIER=Stack /STK=30 /UG=Rn.3796 /UG_TITLE=Rattus norvegicus putative ionotropic glutamate receptor GLURR-F11694B (Glurr) mRNA, partial cds BE113383 glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A Grinl1a 192147 NM_183402 0006350 // transcription // inferred from electronic annotation /// 0051685 // maintenance of ER location // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // not recorded /// 0043025 // neuronal cell body // not recorded 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation 1398890_at AI410096 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410096 /DB_XREF=gi:4253600 /DB_XREF=EST238389 /CLONE=RKIEA13 /FEA=EST /CNT=32 /TID=Rn.1470.1 /TIER=Stack /STK=30 /UG=Rn.1470 /UG_TITLE=ESTs, Weakly similar to T26869 hypothetical protein Y43F8C.7 - Caenorhabditis elegans (C.elegans) AI410096 similar to 2310044H10Rik protein MGC93975 292878 NM_001004221 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1398891_at AI103129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103129 /DB_XREF=gi:3707708 /DB_XREF=EST212418 /CLONE=REMBX57 /FEA=EST /CNT=41 /TID=Rn.1122.1 /TIER=Stack /STK=29 /UG=Rn.1122 /UG_TITLE=ESTs, Weakly similar to T33051 hypothetical protein F37F2.1 - Caenorhabditis elegans (fragment) (C.elegans) AI103129 mitochondrial ribosomal protein L15 Mrpl15 297799 NM_001106633 0006412 // translation // inferred from electronic annotation 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1398892_at BI287960 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287960 /DB_XREF=gi:14944075 /DB_XREF=UI-R-CX0s-ccw-c-12-0-UI.s1 /CLONE=UI-R-CX0s-ccw-c-12-0-UI /FEA=EST /CNT=36 /TID=Rn.3491.1 /TIER=Stack /STK=29 /UG=Rn.3491 /UG_TITLE=ESTs, Moderately similar to Niemann Pick type C2 (Mus musculus) (M.musculus) BI287960 Niemann-Pick disease, type C2 Npc2 286898 NM_173118 0009615 // response to virus // not recorded /// 0030301 // cholesterol transport // not recorded /// 0032366 // intracellular sterol transport // not recorded /// 0032367 // intracellular cholesterol transport // inferred from electronic annotation /// 0032367 // intracellular cholesterol transport // not recorded /// 0033344 // cholesterol efflux // not recorded /// 0042632 // cholesterol homeostasis // not recorded 0005764 // lysosome // not recorded 0015485 // cholesterol binding // not recorded /// 0019899 // enzyme binding // not recorded 1398893_at BG671512 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671512 /DB_XREF=gi:13893611 /DB_XREF=DRNBTD04 /CLONE=DRNBTD04 /FEA=EST /CNT=52 /TID=Rn.2431.1 /TIER=Stack /STK=29 /UG=Rn.2431 /UG_TITLE=ESTs BG671512 Nedd4 family interacting protein 1 Ndfip1 291609 NM_001013059 0002761 // regulation of myeloid leukocyte differentiation // inferred from electronic annotation /// 0002761 // regulation of myeloid leukocyte differentiation // not recorded /// 0002829 // negative regulation of type 2 immune response // inferred from electronic annotation /// 0002829 // negative regulation of type 2 immune response // not recorded /// 0006879 // cellular iron ion homeostasis // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // not recorded /// 0010629 // negative regulation of gene expression // inferred from electronic annotation /// 0010629 // negative regulation of gene expression // not recorded /// 0031398 // positive regulation of protein ubiquitination // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0032410 // negative regulation of transporter activity // inferred from electronic annotation /// 0032410 // negative regulation of transporter activity // not recorded /// 0032713 // negative regulation of interleukin-4 production // inferred from electronic annotation /// 0032713 // negative regulation of interleukin-4 production // not recorded /// 0042130 // negative regulation of T cell proliferation // inferred from electronic annotation /// 0042130 // negative regulation of T cell proliferation // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0045619 // regulation of lymphocyte differentiation // inferred from electronic annotation /// 0045619 // regulation of lymphocyte differentiation // not recorded /// 0045732 // positive regulation of protein catabolic process // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // not recorded /// 0048294 // negative regulation of isotype switching to IgE isotypes // inferred from electronic annotation /// 0048294 // negative regulation of isotype switching to IgE isotypes // not recorded /// 0048302 // regulation of isotype switching to IgG isotypes // inferred from electronic annotation /// 0048302 // regulation of isotype switching to IgG isotypes // not recorded /// 0050728 // negative regulation of inflammatory response // inferred from electronic annotation /// 0050728 // negative regulation of inflammatory response // not recorded /// 0051224 // negative regulation of protein transport // inferred from electronic annotation /// 0051224 // negative regulation of protein transport // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0050699 // WW domain binding // inferred from electronic annotation /// 0050699 // WW domain binding // not recorded 1398894_at AI178763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178763 /DB_XREF=gi:3729401 /DB_XREF=EST222445 /CLONE=RSPBK77 /FEA=EST /CNT=39 /TID=Rn.3471.1 /TIER=Stack /STK=29 /UG=Rn.3471 /UG_TITLE=ESTs AI178763 COMM domain containing 3 Commd3 291339 NM_198732 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398895_at BM389419 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389419 /DB_XREF=gi:18189472 /DB_XREF=UI-R-CN1-cjk-m-23-0-UI.s1 /CLONE=UI-R-CN1-cjk-m-23-0-UI /FEA=EST /CNT=37 /TID=Rn.4105.1 /TIER=Stack /STK=28 /UG=Rn.4105 /UG_TITLE=ESTs BM389419 golgi autoantigen, golgin subfamily a, 7 Golga7 361171 NM_001007731 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1398896_at AA892567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892567 /DB_XREF=gi:4132177 /DB_XREF=EST196370 /CLONE=RKIAS95 /FEA=EST /CNT=32 /TID=Rn.2185.1 /TIER=Stack /STK=27 /UG=Rn.2185 /UG_TITLE=ESTs AA892567 archain 1 Arcn1 300674 NM_001007662 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0048205 // COPI coating of Golgi vesicle // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0030663 // COPI coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1398897_at AI411988 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411988 /DB_XREF=gi:4255492 /DB_XREF=EST240282 /CLONE=RKIEJ16 /FEA=EST /CNT=29 /TID=Rn.18.5 /TIER=Stack /STK=27 /UG=Rn.18 /LL=24547 /UG_GENE=Mbp /UG_TITLE=Myelin basic protein AI411988 ubiquitin-conjugating enzyme E2 variant 1 Ube2v1 296390 NM_001110345 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1398898_at BI278623 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278623 /DB_XREF=gi:14925653 /DB_XREF=UI-R-CW0-bxn-h-05-0-UI.s1 /CLONE=UI-R-CW0-bxn-h-05-0-UI /FEA=EST /CNT=29 /TID=Rn.23442.1 /TIER=Stack /STK=27 /UG=Rn.23442 /UG_TITLE=ESTs BI278623 1398899_at AI170414 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170414 /DB_XREF=gi:4134498 /DB_XREF=EST216340 /CLONE=RLUCH96 /FEA=EST /CNT=31 /TID=Rn.7526.1 /TIER=Stack /STK=27 /UG=Rn.7526 /UG_TITLE=ESTs, Highly similar to RPB3 MOUSE DNA-DIRECTED RNA POLYMERASE II 33 KD POLYPEPTIDE (M.musculus) AI170414 polymerase (RNA) II (DNA directed) polypeptide C Polr2c 361365 NM_001012473 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005665 // DNA-directed RNA polymerase II, core complex // not recorded /// 0005737 // cytoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0046983 // protein dimerization activity // inferred from electronic annotation 1398900_at AA893211 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893211 /DB_XREF=gi:3020090 /DB_XREF=EST197014 /CLONE=RKIBD56 /FEA=EST /CNT=29 /TID=Rn.2038.1 /TIER=Stack /STK=24 /UG=Rn.2038 /UG_TITLE=ESTs AA893211 dynactin 3 Dctn3 362504 NM_001108659 1398901_at AA799609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799609 /DB_XREF=gi:2862564 /DB_XREF=EST189106 /CLONE=RHEAD12 /FEA=EST /CNT=26 /TID=Rn.6210.1 /TIER=Stack /STK=22 /UG=Rn.6210 /UG_TITLE=ESTs, Moderately similar to T43443 hypothetical protein DKFZp434A2315.1 (H.sapiens) AA799609 nucleoporin 98 Nup98 81738 NM_031074 0000059 // protein import into nucleus, docking // inferred from mutant phenotype /// 0006260 // DNA replication // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0000776 // kinetochore // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005635 // nuclear envelope // not recorded /// 0005643 // nuclear pore // inferred from direct assay /// 0005643 // nuclear pore // inferred from electronic annotation /// 0005643 // nuclear pore // not recorded /// 0005654 // nucleoplasm // inferred from direct assay /// 0031080 // Nup107-160 complex // not recorded /// 0031080 // Nup107-160 complex // inferred from sequence or structural similarity /// 0046930 // pore complex // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0015288 // porin activity // inferred from electronic annotation /// 0042277 // peptide binding // inferred from direct assay 1398902_at BF282978 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF282978 /DB_XREF=gi:11214048 /DB_XREF=EST447569 /CLONE=RGIDV80 /FEA=EST /CNT=25 /TID=Rn.3556.1 /TIER=Stack /STK=22 /UG=Rn.3556 /UG_TITLE=ESTs BF282978 similar to mKIAA0664 protein RGD1307222 303300 XM_001080615 /// XM_220693 0005488 // binding // inferred from electronic annotation 1398903_at AI411425 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411425 /DB_XREF=gi:4254929 /DB_XREF=EST239719 /CLONE=RKIES45 /FEA=EST /CNT=30 /TID=Rn.3682.1 /TIER=Stack /STK=22 /UG=Rn.3682 /UG_TITLE=ESTs, Moderately similar to ESTD_HUMAN ESTERASE D (H.sapiens) AI411425 esterase D/formylglutathione hydrolase Esd 290401 NM_001106051 0008152 // metabolic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0004091 // carboxylesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // not recorded /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation /// 0018738 // S-formylglutathione hydrolase activity // inferred from electronic annotation 1398904_at AI599066 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599066 /DB_XREF=gi:4608114 /DB_XREF=EST250769 /CLONE=REMEB21 /FEA=EST /CNT=23 /TID=Rn.8381.1 /TIER=Stack /STK=22 /UG=Rn.8381 /UG_TITLE=ESTs AI599066 non-POU domain containing, octamer-binding Nono 317259 NM_001012356 0006281 // DNA repair // inferred from electronic annotation /// 0006310 // DNA recombination // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0016363 // nuclear matrix // not recorded /// 0042382 // paraspeckles // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1398905_at BI285183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285183 /DB_XREF=gi:14938565 /DB_XREF=UI-R-DB0-byx-b-01-0-UI.s1 /CLONE=UI-R-DB0-byx-b-01-0-UI /FEA=EST /CNT=69 /TID=Rn.34356.2 /TIER=Stack /STK=21 /UG=Rn.34356 /LL=24832 /UG_GENE=Thy1 /UG_TITLE=Thymus cell surface antigen BI285183 ATPase, H transporting, lysosomal V1 subunit G1 Atp6v1g1 298103 NM_001106660 0006200 // ATP catabolic process // not recorded /// 0015992 // proton transport // inferred from electronic annotation /// 0015992 // proton transport // not recorded /// 0034220 // ion transmembrane transport // not recorded 0005622 // intracellular // not recorded /// 0005765 // lysosomal membrane // not recorded /// 0005886 // plasma membrane // not recorded /// 0008021 // synaptic vesicle // not recorded /// 0016471 // vacuolar proton-transporting V-type ATPase complex // inferred from electronic annotation /// 0016471 // vacuolar proton-transporting V-type ATPase complex // not recorded 0005515 // protein binding // not recorded /// 0008553 // hydrogen-exporting ATPase activity, phosphorylative mechanism // not recorded /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation /// 0016887 // ATPase activity // not recorded /// 0051117 // ATPase binding // not recorded 1398906_at BM391354 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391354 /DB_XREF=gi:18191407 /DB_XREF=UI-R-DY0-ckq-f-04-0-UI.s1 /CLONE=UI-R-DY0-ckq-f-04-0-UI /FEA=EST /CNT=29 /TID=Rn.3710.1 /TIER=Stack /STK=21 /UG=Rn.3710 /UG_TITLE=ESTs, Weakly similar to W05H7.3.p (Caenorhabditis elegans) (C.elegans) BM391354 sedlin-like LOC287274 287274 XR_007263 /// XR_009606 1398907_at BI296182 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296182 /DB_XREF=gi:14960367 /DB_XREF=UI-R-DK0-cex-c-09-0-UI.s1 /CLONE=UI-R-DK0-cex-c-09-0-UI /FEA=EST /CNT=24 /TID=Rn.3875.1 /TIER=Stack /STK=21 /UG=Rn.3875 /UG_TITLE=ESTs BI296182 ORM1-like 2 (S. cerevisiae) Ormdl2 288783 NM_001105940 0006672 // ceramide metabolic process // not recorded 0005783 // endoplasmic reticulum // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 1398908_at AA799462 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA799462 /DB_XREF=gi:2862417 /DB_XREF=EST188959 /CLONE=RHEAB33 /FEA=EST /CNT=27 /TID=Rn.2208.1 /TIER=Stack /STK=21 /UG=Rn.2208 /UG_TITLE=ESTs, Moderately similar to T02246 hypothetical protein P1.11659_4 (H.sapiens) AA799462 stomatin (Epb7.2)-like 2 Stoml2 298203 NM_001031646 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 1398909_at AA849634 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849634 /DB_XREF=gi:2937174 /DB_XREF=EST192401 /CLONE=RMUAH13 /FEA=EST /CNT=26 /TID=Rn.4199.1 /TIER=Stack /STK=21 /UG=Rn.4199 /UG_TITLE=ESTs AA849634 hypothetical LOC301124 LOC301124 301124 NM_001134533 0005739 // mitochondrion // not recorded 0005515 // protein binding // not recorded 1398910_at BI280327 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI280327 /DB_XREF=gi:14929001 /DB_XREF=UI-R-DE0-cag-f-06-0-UI.s1 /CLONE=UI-R-DE0-cag-f-06-0-UI /FEA=EST /CNT=25 /TID=Rn.6504.1 /TIER=Stack /STK=21 /UG=Rn.6504 /UG_TITLE=ESTs, Weakly similar to T09B4.10.p (Caenorhabditis elegans) (C.elegans) BI280327 STIP1 homology and U-Box containing protein 1 Stub1 287155 NM_001025625 0016567 // protein ubiquitination // inferred from electronic annotation 0000151 // ubiquitin ligase complex // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction 1398911_at AI171870 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171870 /DB_XREF=gi:3711910 /DB_XREF=EST217859 /CLONE=RMUBR78 /FEA=EST /CNT=28 /TID=Rn.5978.1 /TIER=Stack /STK=20 /UG=Rn.5978 /UG_TITLE=ESTs, Weakly similar to S30827 ribosomal protein L2, mitochondrial - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AI171870 mitochondrial ribosomal protein L2 Mrpl2 301240 NM_001034136 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1398912_at BM389259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389259 /DB_XREF=gi:18189312 /DB_XREF=UI-R-DZ0-cko-o-16-0-UI.s1 /CLONE=UI-R-DZ0-cko-o-16-0-UI /FEA=EST /CNT=23 /TID=Rn.8621.1 /TIER=Stack /STK=20 /UG=Rn.8621 /UG_TITLE=ESTs, Moderately similar to T42646 hypothetical protein DKFZp727K171.1 (H.sapiens) BM389259 mitochondrial ribosomal protein L9 mrpl9 310653 NM_001007696 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1398913_at AI599394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599394 /DB_XREF=gi:4608442 /DB_XREF=EST251097 /CLONE=REMEO41 /FEA=EST /CNT=22 /TID=Rn.8885.1 /TIER=Stack /STK=20 /UG=Rn.8885 /UG_TITLE=ESTs, Moderately similar to S23647 NuMA protein (H.sapiens) AI599394 nuclear mitotic apparatus protein 1 Numa1 308870 XM_001068093 /// XM_218972 0007165 // signal transduction // inferred from electronic annotation /// 0051321 // meiotic cell cycle // inferred from expression pattern 0000922 // spindle pole // inferred from direct assay /// 0000922 // spindle pole // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // not recorded /// 0005829 // cytosol // not recorded /// 0005876 // spindle microtubule // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0043025 // neuronal cell body // inferred from direct assay 0000155 // two-component sensor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008017 // microtubule binding // inferred from direct assay 1398914_at AW530341 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW530341 /DB_XREF=gi:7172796 /DB_XREF=UI-R-BU0-amw-a-03-0-UI.s1 /CLONE=UI-R-BU0-amw-a-03-0-UI /FEA=EST /CNT=22 /TID=Rn.816.1 /TIER=Stack /STK=20 /UG=Rn.816 /UG_TITLE=ESTs, Highly similar to RPBY MOUSE DNA-DIRECTED RNA POLYMERASE II 13.3 KDA POLYPEPTIDE (M.musculus) AW530341 polymerase (RNA) II (DNA directed) polypeptide J Polr2j 288588 NM_001105921 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005665 // DNA-directed RNA polymerase II, core complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0005515 // protein binding // not recorded /// 0030275 // LRR domain binding // not recorded /// 0046983 // protein dimerization activity // inferred from electronic annotation 1398915_at BI278208 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278208 /DB_XREF=gi:14924829 /DB_XREF=UI-R-CZ0-bye-g-04-0-UI.s1 /CLONE=UI-R-CZ0-bye-g-04-0-UI /FEA=EST /CNT=21 /TID=Rn.7295.1 /TIER=Stack /STK=20 /UG=Rn.7295 /UG_TITLE=ESTs BI278208 similar to CG14977-PA RGD1309735 360776 NM_001108330 1398916_at AI104388 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI104388 /DB_XREF=gi:3708756 /DB_XREF=EST213677 /CLONE=RHECC65 /FEA=EST /CNT=20 /TID=Rn.3841.2 /TIER=Stack /STK=20 /UG=Rn.3841 /LL=24471 /UG_GENE=Hsp27 /UG_TITLE=Heat shock 27 kDa protein AI104388 aurora kinase A interacting protein 1 Aurkaip1 298687 NM_001004237 0045862 // positive regulation of proteolysis // inferred from electronic annotation /// 0045862 // positive regulation of proteolysis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation 1398917_at BF281221 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF281221 /DB_XREF=gi:11212207 /DB_XREF=EST445728 /CLONE=RGIAA44 /FEA=EST /CNT=39 /TID=Rn.8562.2 /TIER=Stack /STK=19 /UG=Rn.8562 /LL=84476 /UG_GENE=Spnr /UG_TITLE=double-stranded RNA-binding protein p74 BF281221 ribosomal protein L7 Rpl7 297755 NM_001100534 0006364 // rRNA processing // not recorded /// 0006412 // translation // inferred from electronic annotation /// 0006414 // translational elongation // not recorded /// 0042273 // ribosomal large subunit biogenesis // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0015934 // large ribosomal subunit // inferred from electronic annotation /// 0022625 // cytosolic large ribosomal subunit // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003677 // DNA binding // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // not recorded /// 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded 1398918_at BG380742 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380742 /DB_XREF=gi:13305214 /DB_XREF=UI-R-CT0-bua-h-07-0-UI.s1 /CLONE=UI-R-CT0-bua-h-07-0-UI /FEA=EST /CNT=24 /TID=Rn.2842.1 /TIER=Stack /STK=19 /UG=Rn.2842 /UG_TITLE=ESTs BG380742 zinc finger, AN1-type domain 3 Zfand3 361816 NM_001012175 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398919_at BI296033 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296033 /DB_XREF=gi:14960070 /DB_XREF=UI-R-DK0-cfd-f-01-0-UI.s1 /CLONE=UI-R-DK0-cfd-f-01-0-UI /FEA=EST /CNT=25 /TID=Rn.1434.1 /TIER=Stack /STK=19 /UG=Rn.1434 /UG_TITLE=ESTs, Highly similar to AF151857 1 CGI-99 protein (H.sapiens) BI296033 similar to Hypothetical protein CGI-99 RGD1304704 302247 NM_001047874 0005515 // protein binding // not recorded /// 0042802 // identical protein binding // not recorded 1398920_at AI228651 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228651 /DB_XREF=gi:3812538 /DB_XREF=EST225346 /CLONE=RBRCX64 /FEA=EST /CNT=23 /TID=Rn.3730.1 /TIER=Stack /STK=19 /UG=Rn.3730 /UG_TITLE=ESTs AI228651 dyslexia susceptibility 2-like LOC100294508 100294508 NM_001159655 1398921_at BE110549 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110549 /DB_XREF=gi:8502654 /DB_XREF=UI-R-BJ1-avt-c-10-0-UI.s1 /CLONE=UI-R-BJ1-avt-c-10-0-UI /FEA=EST /CNT=20 /TID=Rn.3445.1 /TIER=Stack /STK=19 /UG=Rn.3445 /UG_TITLE=ESTs BE110549 mitochondrial ribosomal protein L37 Mrpl37 56281 NM_001004235 0006412 // translation // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1398922_at BM389018 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389018 /DB_XREF=gi:18189071 /DB_XREF=UI-R-DZ0-ckn-p-16-0-UI.s1 /CLONE=UI-R-DZ0-ckn-p-16-0-UI /FEA=EST /CNT=19 /TID=Rn.9259.1 /TIER=Stack /STK=19 /UG=Rn.9259 /UG_TITLE=ESTs, Moderately similar to CA16 MOUSE COLLAGEN ALPHA 1(VI) CHAIN PRECURSOR (M.musculus) BM389018 1398923_at AI101122 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101122 /DB_XREF=gi:3706093 /DB_XREF=EST210411 /CLONE=RBRBF79 /FEA=EST /CNT=28 /TID=Rn.1025.1 /TIER=Stack /STK=18 /UG=Rn.1025 /UG_TITLE=ESTs, Weakly similar to T22416 hypothetical protein F49C12.12 - Caenorhabditis elegans (C.elegans) AI101122 ribonuclease, RNase K Rnasek 287453 NM_001137561 0009303 // rRNA transcription // not recorded 0004521 // endoribonuclease activity // not recorded 1398924_at AA849774 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849774 /DB_XREF=gi:2937314 /DB_XREF=EST192541 /CLONE=RMUAI69 /FEA=EST /CNT=23 /TID=Rn.6510.1 /TIER=Stack /STK=18 /UG=Rn.6510 /UG_TITLE=ESTs AA849774 mannosidase, beta A, lysosomal-like Manbal 499934 NM_001173380 /// XM_001067976 /// XM_002726286 /// XM_002729245 /// XM_575279 0016021 // integral to membrane // inferred from electronic annotation 1398925_at BI274664 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274664 /DB_XREF=gi:14885785 /DB_XREF=UI-R-CX0-bws-e-09-0-UI.s1 /CLONE=UI-R-CX0-bws-e-09-0-UI /FEA=EST /CNT=19 /TID=Rn.17113.1 /TIER=Stack /STK=18 /UG=Rn.17113 /UG_TITLE=ESTs BI274664 FtsJ methyltransferase domain containing 2 Ftsjd2 309656 NM_001014031 0006370 // mRNA capping // inferred from sequence or structural similarity /// 0006370 // mRNA capping // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0032259 // methylation // inferred from electronic annotation /// 0080009 // mRNA methylation // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004483 // mRNA (nucleoside-2'-O-)-methyltransferase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1398926_at AI410456 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410456 /DB_XREF=gi:4253960 /DB_XREF=EST238749 /CLONE=RHECS11 /FEA=EST /CNT=25 /TID=Rn.919.1 /TIER=Stack /STK=17 /UG=Rn.919 /UG_TITLE=ESTs, Highly similar to prefoldin subunit 1 (H.sapiens) AI410456 prefoldin subunit 1 Pfdn1 361310 NM_001108427 0006457 // protein folding // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005886 // plasma membrane // not recorded /// 0016272 // prefoldin complex // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0051082 // unfolded protein binding // inferred from electronic annotation 1398927_at BF406225 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF406225 /DB_XREF=gi:11394200 /DB_XREF=UI-R-CA1-bjf-g-12-0-UI.s1 /CLONE=UI-R-CA1-bjf-g-12-0-UI /FEA=EST /CNT=28 /TID=Rn.3660.1 /TIER=Stack /STK=17 /UG=Rn.3660 /UG_TITLE=ESTs BF406225 similar to 0610010K06Rik protein RGD1307161 305031 NM_001025669 0016020 // membrane // inferred from electronic annotation 1398928_at BG378296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378296 /DB_XREF=gi:13302768 /DB_XREF=UI-R-CV1-bvq-d-10-0-UI.s1 /CLONE=UI-R-CV1-bvq-d-10-0-UI /FEA=EST /CNT=22 /TID=Rn.2595.1 /TIER=Stack /STK=17 /UG=Rn.2595 /UG_TITLE=ESTs, Moderately similar to cICK0721Q.5 (H.sapiens) BG378296 cutA divalent cation tolerance homolog (E. coli) Cuta 294288 NM_001164706 /// NM_001164707 /// NM_212494 0008104 // protein localization // inferred from mutant phenotype /// 0008104 // protein localization // not recorded /// 0010038 // response to metal ion // inferred from electronic annotation /// 0051260 // protein homooligomerization // inferred from direct assay 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from sequence or structural similarity 0005515 // protein binding // not recorded /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from sequence or structural similarity 1398929_at AW525691 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW525691 /DB_XREF=gi:7168076 /DB_XREF=UI-R-BJ0p-aiu-f-12-0-UI.s1 /CLONE=UI-R-BJ0p-aiu-f-12-0-UI /FEA=EST /CNT=20 /TID=Rn.22102.1 /TIER=Stack /STK=17 /UG=Rn.22102 /UG_TITLE=ESTs, Weakly similar to T34105 hypothetical protein C17G10.8 - Caenorhabditis elegans (C.elegans) AW525691 eukaryotic translation initiation factor 3, subunit 6 interacting protein Eif3s6ip 300069 NM_001034134 0006413 // translational initiation // inferred from electronic annotation 0001650 // fibrillar center // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005852 // eukaryotic translation initiation factor 3 complex // inferred from electronic annotation 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation 1398930_at BI278546 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278546 /DB_XREF=gi:14925498 /DB_XREF=UI-R-CW0-bxn-a-08-0-UI.s1 /CLONE=UI-R-CW0-bxn-a-08-0-UI /FEA=EST /CNT=18 /TID=Rn.19803.1 /TIER=Stack /STK=17 /UG=Rn.19803 /UG_TITLE=ESTs, Weakly similar to VATL MOUSE VACUOLAR ATP SYNTHASE 16 KD PROTEOLIPID SUBUNIT (R.norvegicus) BI278546 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b Atp6v0b 298451 NM_001106681 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation 0005768 // endosome // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0033177 // proton-transporting two-sector ATPase complex, proton-transporting domain // inferred from electronic annotation /// 0033179 // proton-transporting V-type ATPase, V0 domain // inferred from electronic annotation 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation 1398931_at BI282246 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282246 /DB_XREF=gi:14932824 /DB_XREF=UI-R-CU0s-cby-d-01-0-UI.s1 /CLONE=UI-R-CU0s-cby-d-01-0-UI /FEA=EST /CNT=18 /TID=Rn.1807.1 /TIER=Stack /STK=17 /UG=Rn.1807 /UG_TITLE=ESTs BI282246 similar to CG12935-PA /// transmembrane protein 223 LOC686289 /// Tmem223 686289 /// 690285 NM_001191104 /// XM_001073320 /// XM_001073961 0005739 // mitochondrion // not recorded 1398932_at AI227884 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227884 /DB_XREF=gi:3811771 /DB_XREF=EST224579 /CLONE=RBRCN11 /FEA=EST /CNT=31 /TID=Rn.8524.1 /TIER=Stack /STK=16 /UG=Rn.8524 /UG_TITLE=ESTs, Highly similar to IPK1 BOVIN HINT PROTEIN (R.norvegicus) AI227884 histidine triad nucleotide binding protein 1 Hint1 690660 NM_001109607 0006886 // intracellular protein transport // traceable author statement /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from mutant phenotype /// 0006900 // membrane budding // traceable author statement 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0030134 // ER to Golgi transport vesicle // inferred from mutant phenotype 0003824 // catalytic activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1398933_at AA894259 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894259 /DB_XREF=gi:3021138 /DB_XREF=EST198062 /CLONE=RSPAU09 /FEA=EST /CNT=24 /TID=Rn.13525.1 /TIER=Stack /STK=16 /UG=Rn.13525 /UG_TITLE=ESTs, Weakly similar to T14766 hypothetical protein DKFZp564K247.1 (H.sapiens) AA894259 HIG1 hypoxia inducible domain family, member 2A Higd2a 290999 NM_001106102 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1398934_at BE107454 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107454 /DB_XREF=gi:8499559 /DB_XREF=UI-R-BS1-ayt-h-03-0-UI.s1 /CLONE=UI-R-BS1-ayt-h-03-0-UI /FEA=EST /CNT=23 /TID=Rn.19523.1 /TIER=Stack /STK=16 /UG=Rn.19523 /UG_TITLE=ESTs, Highly similar to T17217 hypothetical protein DKFZp434D2050.1 (H.sapiens) BE107454 mitogen-activated protein kinase kinase kinase 7 interacting protein 2 Map3k7ip2 308267 NM_001012062 0007507 // heart development // inferred from sequence or structural similarity /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0045860 // positive regulation of protein kinase activity // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0010008 // endosome membrane // not recorded 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070530 // K63-linked polyubiquitin binding // not recorded /// 0070530 // K63-linked polyubiquitin binding // inferred from sequence or structural similarity 1398935_at AI009819 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009819 /DB_XREF=gi:4133122 /DB_XREF=EST204270 /CLONE=RLUBO84 /FEA=EST /CNT=22 /TID=Rn.8320.1 /TIER=Stack /STK=16 /UG=Rn.8320 /UG_TITLE=ESTs AI009819 1398936_at AI598546 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598546 /DB_XREF=gi:4607580 /DB_XREF=EST250235 /CLONE=REMDS38 /FEA=EST /CNT=21 /TID=Rn.2057.1 /TIER=Stack /STK=16 /UG=Rn.2057 /UG_TITLE=ESTs, Highly similar to eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked (Mus musculus) (M.musculus) AI598546 eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked Eif2s3x 299027 NM_001100542 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // not recorded /// 0006413 // translational initiation // inferred from electronic annotation 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003743 // translation initiation factor activity // not recorded /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0008135 // translation factor activity, nucleic acid binding // not recorded /// 0008135 // translation factor activity, nucleic acid binding // inferred from electronic annotation 1398937_at BI279381 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279381 /DB_XREF=gi:14927141 /DB_XREF=UI-R-DA0-byn-g-05-0-UI.s1 /CLONE=UI-R-DA0-byn-g-05-0-UI /FEA=EST /CNT=20 /TID=Rn.6948.1 /TIER=Stack /STK=16 /UG=Rn.6948 /UG_TITLE=ESTs, Highly similar to DD15 MOUSE PUTATIVE PRE-MRNA SPLICING FACTOR RNA HELICASE (M.musculus) BI279381 DEAH (Asp-Glu-Ala-His) box polypeptide 15 Dhx15 289693 NM_001191597 /// XM_001054651 /// XM_214053 0005689 // U12-type spliceosomal complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation 1398938_at AI170780 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170780 /DB_XREF=gi:4134545 /DB_XREF=EST216719 /CLONE=RMUBB43 /FEA=EST /CNT=19 /TID=Rn.885.1 /TIER=Stack /STK=16 /UG=Rn.885 /UG_TITLE=ESTs AI170780 acid phosphatase 1, soluble Acp1 24161 NM_001135562 /// NM_021262 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0007268 // synaptic transmission // inferred from expression pattern /// 0007268 // synaptic transmission // non-traceable author statement /// 0016311 // dephosphorylation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay 0003993 // acid phosphatase activity // inferred from direct assay /// 0003993 // acid phosphatase activity // not recorded /// 0003993 // acid phosphatase activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004726 // non-membrane spanning protein tyrosine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // not recorded /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from direct assay /// 0042802 // identical protein binding // not recorded 1398939_at BF284885 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF284885 /DB_XREF=gi:11215955 /DB_XREF=EST449476 /CLONE=RGIEX43 /FEA=EST /CNT=19 /TID=Rn.33208.1 /TIER=Stack /STK=16 /UG=Rn.33208 /UG_TITLE=ESTs, Weakly similar to ORM1_YEAST ORM1 PROTEIN (S.cerevisiae) BF284885 1398940_at AW532525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW532525 /DB_XREF=gi:7174939 /DB_XREF=UI-R-BS0-ami-g-04-0-UI.s1 /CLONE=UI-R-BS0-ami-g-04-0-UI /FEA=EST /CNT=17 /TID=Rn.9404.1 /TIER=Stack /STK=16 /UG=Rn.9404 /UG_TITLE=ESTs, Moderately similar to T02345 hypothetical protein KIAA0324 (H.sapiens) AW532525 serine/arginine repetitive matrix 2 Srrm2 302969 XM_001056343 /// XM_220207 0015030 // Cajal body // not recorded /// 0015030 // Cajal body // inferred from electronic annotation /// 0016607 // nuclear speck // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0047485 // protein N-terminus binding // not recorded /// 0047485 // protein N-terminus binding // inferred from electronic annotation /// 0070742 // C2H2 zinc finger domain binding // not recorded /// 0070742 // C2H2 zinc finger domain binding // inferred from electronic annotation 1398941_at AI170413 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI170413 /DB_XREF=gi:3710453 /DB_XREF=EST216339 /CLONE=RLUCH95 /FEA=EST /CNT=33 /TID=Rn.40328.1 /TIER=Stack /STK=15 /UG=Rn.40328 /UG_TITLE=ESTs, Weakly similar to ROK_HUMAN HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN K (R.norvegicus) AI170413 poly(rC) binding protein 2 Pcbp2 363005 NM_001013223 0008380 // RNA splicing // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0050687 // negative regulation of defense response to virus // not recorded 0005737 // cytoplasm // not recorded 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0019899 // enzyme binding // not recorded /// 0031625 // ubiquitin protein ligase binding // not recorded 1398942_at BI278885 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278885 /DB_XREF=gi:14926165 /DB_XREF=UI-R-DB0-bys-b-02-0-UI.s1 /CLONE=UI-R-DB0-bys-b-02-0-UI /FEA=EST /CNT=22 /TID=Rn.8239.1 /TIER=Stack /STK=15 /UG=Rn.8239 /UG_TITLE=ESTs BI278885 hypothetical protein LOC100125365 LOC100125365 100125365 XR_085872 /// XR_086292 0042475 // odontogenesis of dentine-containing tooth // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0016563 // transcription activator activity // inferred from electronic annotation 1398943_at BI274583 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274583 /DB_XREF=gi:14885623 /DB_XREF=UI-R-CW0-bwl-e-09-0-UI.s1 /CLONE=UI-R-CW0-bwl-e-09-0-UI /FEA=EST /CNT=23 /TID=Rn.13531.1 /TIER=Stack /STK=15 /UG=Rn.13531 /UG_TITLE=ESTs, Weakly similar to CTAG_HUMAN AUTOIMMUNOGENIC CANCERTESTIS ANTIGEN NY-ESO-1 (H.sapiens) BI274583 L antigen family, member 3 Lage3 293863 NM_001106345 0005515 // protein binding // not recorded 1398944_at BE116857 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116857 /DB_XREF=gi:8508962 /DB_XREF=UI-R-BS1-azg-a-11-0-UI.s1 /CLONE=UI-R-BS1-azg-a-11-0-UI /FEA=EST /CNT=22 /TID=Rn.20238.1 /TIER=Stack /STK=15 /UG=Rn.20238 /UG_TITLE=ESTs, Weakly similar to simple repeat sequence-containing transcript (Mus musculus) (M.musculus) BE116857 apoptotic chromatin condensation inducer 1 Acin1 305884 NM_001170468 0030218 // erythrocyte differentiation // inferred from electronic annotation /// 0030218 // erythrocyte differentiation // not recorded /// 0030263 // apoptotic chromosome condensation // inferred from electronic annotation /// 0030263 // apoptotic chromosome condensation // not recorded /// 0045657 // positive regulation of monocyte differentiation // inferred from electronic annotation /// 0045657 // positive regulation of monocyte differentiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398945_at AA851439 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA851439 /DB_XREF=gi:2938979 /DB_XREF=EST194207 /CLONE=RPLAG59 /FEA=EST /CNT=20 /TID=Rn.2465.1 /TIER=Stack /STK=15 /UG=Rn.2465 /UG_TITLE=ESTs, Highly similar to DDX6 MOUSE PROBABLE ATP-DEPENDENT RNA HELICASE P54 (M.musculus) AA851439 1398946_at AI230278 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230278 /DB_XREF=gi:3814165 /DB_XREF=EST226973 /CLONE=REMCU50 /FEA=EST /CNT=20 /TID=Rn.8846.1 /TIER=Stack /STK=15 /UG=Rn.8846 /UG_TITLE=ESTs, Highly similar to mitochondrial ribosomal protein S16 (Mus musculus) (M.musculus) AI230278 mitochondrial ribosomal protein S16 Mrps16 688912 NM_001109518 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005763 // mitochondrial small ribosomal subunit // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1398947_at BE107358 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE107358 /DB_XREF=gi:8499463 /DB_XREF=UI-R-BS1-ays-g-10-0-UI.s1 /CLONE=UI-R-BS1-ays-g-10-0-UI /FEA=EST /CNT=19 /TID=Rn.4277.1 /TIER=Stack /STK=15 /UG=Rn.4277 /UG_TITLE=ESTs BE107358 pumilio homolog 2 (Drosophila) Pum2 298874 NM_001106715 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398948_at AI228250 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228250 /DB_XREF=gi:3812137 /DB_XREF=EST224945 /CLONE=RBRCS41 /FEA=EST /CNT=23 /TID=Rn.3474.1 /TIER=Stack /STK=15 /UG=Rn.3474 /UG_TITLE=ESTs, Highly similar to G02043 TXBP151 (H.sapiens) AI228250 Tax1 (human T-cell leukemia virus type I) binding protein 1 Tax1bp1 246244 NM_001004199 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0042802 // identical protein binding // not recorded 1398949_at BM392094 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392094 /DB_XREF=gi:18192147 /DB_XREF=UI-R-DO1-ckp-k-09-0-UI.s1 /CLONE=UI-R-DO1-ckp-k-09-0-UI /FEA=EST /CNT=21 /TID=Rn.11568.1 /TIER=Stack /STK=15 /UG=Rn.11568 /UG_TITLE=ESTs, Weakly similar to S.pombe hypothetical protein C1D4.09C like (Caenorhabditis elegans) (C.elegans) BM392094 similar to 2410001C21Rik protein RGD1311072 296410 NM_001033890 1398950_at BI275914 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275914 /DB_XREF=gi:14920317 /DB_XREF=UI-R-CX0-bxi-a-04-0-UI.s1 /CLONE=UI-R-CX0-bxi-a-04-0-UI /FEA=EST /CNT=18 /TID=Rn.12943.1 /TIER=Stack /STK=15 /UG=Rn.12943 /UG_TITLE=ESTs BI275914 unc-119 homolog B (C. elegans) Unc119b 288702 NM_001105934 1398951_at BE109021 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109021 /DB_XREF=gi:8501126 /DB_XREF=UI-R-BS1-azc-b-01-0-UI.s1 /CLONE=UI-R-BS1-azc-b-01-0-UI /FEA=EST /CNT=18 /TID=Rn.25167.1 /TIER=Stack /STK=15 /UG=Rn.25167 /UG_TITLE=ESTs, Highly similar to T17270 hypothetical protein DKFZp434N241.1 (H.sapiens) BE109021 CCR4-NOT transcription complex, subunit 1 Cnot1 291841 NM_001134840 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1398952_at AI233222 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233222 /DB_XREF=gi:3817102 /DB_XREF=EST229910 /CLONE=RKIDC39 /FEA=EST /CNT=20 /TID=Rn.22335.1 /TIER=Stack /STK=15 /UG=Rn.22335 /UG_TITLE=ESTs AI233222 similar to RIKEN cDNA 2310036O22 RGD1564093 288920 NM_001105946 1398953_at BM386183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM386183 /DB_XREF=gi:18186236 /DB_XREF=UI-R-CN1-cjf-m-21-0-UI.s1 /CLONE=UI-R-CN1-cjf-m-21-0-UI /FEA=EST /CNT=17 /TID=Rn.6606.1 /TIER=Stack /STK=15 /UG=Rn.6606 /UG_TITLE=ESTs, Highly similar to FCL_MOUSE GDP-fucose synthetase (FX protein) (Red cell NADP(H)-binding protein) (Transplantation antigen P35B) (Tum-P35B antigen) (Includes: GDP-mannose-4-keto-6-D epimerase ; GDP-4-keto-6-L-galactose reductase ) (M.musculus) BM386183 tissue specific transplantation antigen P35B Tsta3 300036 NM_001127455 0008152 // metabolic process // inferred from electronic annotation /// 0019835 // cytolysis // not recorded /// 0044237 // cellular metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005488 // binding // not recorded /// 0050662 // coenzyme binding // inferred from electronic annotation 1398954_at AI412298 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412298 /DB_XREF=gi:4255802 /DB_XREF=EST240596 /CLONE=RBRDV62 /FEA=EST /CNT=16 /TID=Rn.65448.1 /TIER=Stack /STK=15 /UG=Rn.65448 /UG_TITLE=ESTs, Highly similar to DNPE_MOUSE Aspartyl aminopeptidase (M.musculus) AI412298 aspartyl aminopeptidase Dnpep 301529 NM_001024879 0006508 // proteolysis // inferred from electronic annotation 0005773 // vacuole // inferred from electronic annotation 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398955_at BG378922 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378922 /DB_XREF=gi:13303394 /DB_XREF=UI-R-CV1-bvu-e-11-0-UI.s1 /CLONE=UI-R-CV1-bvu-e-11-0-UI /FEA=EST /CNT=17 /TID=Rn.10842.2 /TIER=Stack /STK=15 /UG=Rn.10842 /UG_TITLE=Rat cytochrome P450CMF1b mRNA, complete cds BG378922 COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis) Cops8 363283 NM_001013227 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0008180 // signalosome // inferred from electronic annotation /// 0008180 // signalosome // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398956_at BE113384 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113384 /DB_XREF=gi:8505489 /DB_XREF=UI-R-BJ1-awe-g-03-0-UI.s1 /CLONE=UI-R-BJ1-awe-g-03-0-UI /FEA=EST /CNT=15 /TID=Rn.19435.1 /TIER=Stack /STK=15 /UG=Rn.19435 /UG_TITLE=ESTs BE113384 1398957_at AA817907 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA817907 /DB_XREF=gi:4198431 /DB_XREF=UI-R-A0-af-e-06-0-UI.s1 /CLONE=UI-R-A0-af-e-06-0-UI /FEA=EST /CNT=15 /TID=Rn.16410.1 /TIER=Stack /STK=15 /UG=Rn.16410 /UG_TITLE=ESTs, Moderately similar to S47628 GTA-kinase - rat (R.norvegicus) AA817907 similar to cell division cycle 2-like 1 RGD1566355 315362 XM_001056402 /// XM_235722 0006468 // protein phosphorylation // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation 1398958_at BI278849 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278849 /DB_XREF=gi:14926093 /DB_XREF=UI-R-CX0-bwx-f-06-0-UI.s1 /CLONE=UI-R-CX0-bwx-f-06-0-UI /FEA=EST /CNT=15 /TID=Rn.14772.1 /TIER=Stack /STK=15 /UG=Rn.14772 /UG_TITLE=ESTs, Weakly similar to NAR1_YEAST Nuclear architecture related protein 1 (S.cerevisiae) BI278849 nuclear prelamin A recognition factor-like Narfl 360496 NM_001013183 0001666 // response to hypoxia // not recorded /// 0016226 // iron-sulfur cluster assembly // not recorded /// 0016226 // iron-sulfur cluster assembly // inferred from sequence or structural similarity /// 0032364 // oxygen homeostasis // not recorded /// 0045449 // regulation of transcription // not recorded 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation 1398959_at AA850070 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850070 /DB_XREF=gi:2937610 /DB_XREF=EST192837 /CLONE=ROVAB47 /FEA=EST /CNT=15 /TID=Rn.6556.1 /TIER=Stack /STK=15 /UG=Rn.6556 /UG_TITLE=ESTs AA850070 CCAAT/enhancer binding protein (C/EBP), delta Cebpd 25695 NM_013154 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003704 // specific RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0010843 // promoter binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0046983 // protein dimerization activity // inferred from electronic annotation 1398960_at AI172328 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI172328 /DB_XREF=gi:3712368 /DB_XREF=EST218330 /CLONE=RMUBX86 /FEA=EST /CNT=32 /TID=Rn.8614.3 /TIER=Stack /STK=14 /UG=Rn.8614 /LL=79256 /UG_GENE=Hnrpd /UG_TITLE=RNA binding protein p45AUF1 AI172328 chaperonin containing Tcp1, subunit 6A (zeta 1) Cct6a 288620 NM_001033684 0006457 // protein folding // inferred from electronic annotation /// 0044267 // cellular protein metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005832 // chaperonin-containing T-complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1398961_at AI232296 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232296 /DB_XREF=gi:3816176 /DB_XREF=EST228984 /CLONE=RKIBZ87 /FEA=EST /CNT=24 /TID=Rn.17153.1 /TIER=Stack /STK=14 /UG=Rn.17153 /UG_TITLE=ESTs AI232296 similar to ring finger protein 13 LOC681578 681578 NM_001109444 0051865 // protein autoubiquitination // inferred from sequence or structural similarity 0000139 // Golgi membrane // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005637 // nuclear inner membrane // inferred from electronic annotation /// 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // inferred from sequence or structural similarity /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031902 // late endosome membrane // inferred from sequence or structural similarity /// 0031902 // late endosome membrane // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1398962_at BM388453 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388453 /DB_XREF=gi:18188506 /DB_XREF=UI-R-DZ0-ckm-e-03-0-UI.s1 /CLONE=UI-R-DZ0-ckm-e-03-0-UI /FEA=EST /CNT=19 /TID=Rn.15712.1 /TIER=Stack /STK=14 /UG=Rn.15712 /UG_TITLE=ESTs, Weakly similar to BEM-1BUD5 suppressor-like (Caenorhabditis elegans) (C.elegans) BM388453 family with sequence similarity 108, member A1 Fam108a1 299617 NM_001006983 0005576 // extracellular region // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation 1398963_at BM392226 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392226 /DB_XREF=gi:18192279 /DB_XREF=UI-R-DO1-ckp-d-21-0-UI.s1 /CLONE=UI-R-DO1-ckp-d-21-0-UI /FEA=EST /CNT=17 /TID=Rn.37725.3 /TIER=Stack /STK=14 /UG=Rn.37725 /LL=170922 /UG_GENE=Ilk /UG_TITLE=integrin-linked kinase BM392226 TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor Taf10 293345 NM_001134735 0000082 // G1/S transition of mitotic cell cycle // not recorded /// 0001889 // liver development // not recorded /// 0006352 // transcription initiation // not recorded /// 0006352 // transcription initiation // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0006915 // apoptosis // not recorded /// 0009790 // embryo development // not recorded /// 0010468 // regulation of gene expression // not recorded /// 0016578 // histone deubiquitination // inferred from electronic annotation /// 0016578 // histone deubiquitination // not recorded /// 0043623 // cellular protein complex assembly // not recorded /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0043966 // histone H3 acetylation // not recorded /// 0051101 // regulation of DNA binding // not recorded /// 0051260 // protein homooligomerization // inferred from electronic annotation /// 0051260 // protein homooligomerization // not recorded /// 0070365 // hepatocyte differentiation // not recorded 0000125 // PCAF complex // inferred from electronic annotation /// 0000125 // PCAF complex // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005669 // transcription factor TFIID complex // inferred from electronic annotation /// 0005669 // transcription factor TFIID complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0030914 // STAGA complex // inferred from electronic annotation /// 0030914 // STAGA complex // not recorded /// 0033276 // transcription factor TFTC complex // inferred from electronic annotation /// 0033276 // transcription factor TFTC complex // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor activity // not recorded /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016986 // transcription initiation factor activity // inferred from electronic annotation /// 0016986 // transcription initiation factor activity // not recorded /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0030331 // estrogen receptor binding // inferred from electronic annotation /// 0030331 // estrogen receptor binding // not recorded /// 0070063 // RNA polymerase binding // inferred from electronic annotation /// 0070063 // RNA polymerase binding // not recorded 1398964_at AI231773 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI231773 /DB_XREF=gi:4135668 /DB_XREF=EST228461 /CLONE=RHECO13 /FEA=EST /CNT=16 /TID=Rn.18892.1 /TIER=Stack /STK=14 /UG=Rn.18892 /UG_TITLE=ESTs AI231773 1398965_at BF388772 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF388772 /DB_XREF=gi:11373596 /DB_XREF=UI-R-BS2-bde-d-04-0-UI.s1 /CLONE=UI-R-BS2-bde-d-04-0-UI /FEA=EST /CNT=16 /TID=Rn.12527.1 /TIER=Stack /STK=14 /UG=Rn.12527 /UG_TITLE=ESTs, Highly similar to T14265 golgin-245 - mouse (M.musculus) BF388772 golgi autoantigen, golgin subfamily a, 4 Golga4 501069 NM_001191080 /// XM_001061798 /// XM_001077249 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded 1398966_at AI169154 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI169154 /DB_XREF=gi:3705462 /DB_XREF=EST214988 /CLONE=RKIBO19 /FEA=EST /CNT=16 /TID=Rn.1691.1 /TIER=Stack /STK=14 /UG=Rn.1691 /UG_TITLE=ESTs, Weakly similar to SSXT MOUSE SSXT PROTEIN (M.musculus) AI169154 similar to differentially expressed in B16F10 1 LOC687029 687029 XM_001078569 1398967_at AI410050 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410050 /DB_XREF=gi:4253554 /DB_XREF=EST238343 /CLONE=RPLDH44 /FEA=EST /CNT=15 /TID=Rn.7360.1 /TIER=Stack /STK=14 /UG=Rn.7360 /UG_TITLE=ESTs AI410050 mediator complex subunit 24 Med24 619436 NM_001034079 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0030518 // steroid hormone receptor signaling pathway // not recorded /// 0030521 // androgen receptor signaling pathway // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0051291 // protein heterooligomerization // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0016592 // mediator complex // not recorded 0003712 // transcription cofactor activity // not recorded /// 0003713 // transcription coactivator activity // inferred from direct assay /// 0004402 // histone acetyltransferase activity // inferred from direct assay /// 0004872 // receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // not recorded /// 0016455 // RNA polymerase II transcription mediator activity // not recorded /// 0016563 // transcription activator activity // not recorded /// 0046966 // thyroid hormone receptor binding // not recorded 1398968_at AI168979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI168979 /DB_XREF=gi:4134353 /DB_XREF=EST214807 /CLONE=RKIBL45 /FEA=EST /CNT=14 /TID=Rn.2639.1 /TIER=Stack /STK=14 /UG=Rn.2639 /UG_TITLE=ESTs AI168979 cytokine-like nuclear factor n-pac N-pac 360477 NM_001007800 0006098 // pentose-phosphate shunt // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004616 // phosphogluconate dehydrogenase (decarboxylating) activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation 1398969_at BE104323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104323 /DB_XREF=gi:8496423 /DB_XREF=UI-R-BX0-arn-d-11-0-UI.s1 /CLONE=UI-R-BX0-arn-d-11-0-UI /FEA=EST /CNT=14 /TID=Rn.1048.1 /TIER=Stack /STK=14 /UG=Rn.1048 /UG_TITLE=ESTs BE104323 1398970_at BI303004 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI303004 /DB_XREF=gi:14979284 /DB_XREF=UI-R-DO0-ciy-p-11-0-UI.s1 /CLONE=UI-R-DO0-ciy-p-11-0-UI /FEA=EST /CNT=34 /TID=Rn.12132.1 /TIER=Stack /STK=13 /UG=Rn.12132 /UG_TITLE=ESTs, Highly similar to translocation protein-1 (H.sapiens) BI303004 SEC62 homolog (S. cerevisiae) Sec62 294912 NM_001034129 0015031 // protein transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016235 // aggresome // inferred from electronic annotation /// 0016235 // aggresome // not recorded /// 0045111 // intermediate filament cytoskeleton // inferred from electronic annotation /// 0045111 // intermediate filament cytoskeleton // not recorded 0008565 // protein transporter activity // inferred from electronic annotation 1398971_at BI283725 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283725 /DB_XREF=gi:14935751 /DB_XREF=UI-R-CW0s-cch-a-05-0-UI.s1 /CLONE=UI-R-CW0s-cch-a-05-0-UI /FEA=EST /CNT=26 /TID=Rn.3552.1 /TIER=Stack /STK=13 /UG=Rn.3552 /UG_TITLE=ESTs BI283725 similar to CG14967-PA RGD1307929 303280 XM_001080815 /// XM_220636 1398972_at AW916366 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916366 /DB_XREF=gi:8082077 /DB_XREF=EST347657 /CLONE=RGIDN73 /FEA=EST /CNT=24 /TID=Rn.3963.1 /TIER=Stack /STK=13 /UG=Rn.3963 /UG_TITLE=ESTs, Weakly similar to PC1154 tumor rejection antigen P815 - mouse (M.musculus) AW916366 COP9 constitutive photomorphogenic homolog subunit 3 (Arabidopsis) Cops3 287367 NM_001004200 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0008180 // signalosome // inferred from electronic annotation /// 0008180 // signalosome // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398973_at BI296499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI296499 /DB_XREF=gi:14960982 /DB_XREF=UI-R-CV2-cgr-h-09-0-UI.s1 /CLONE=UI-R-CV2-cgr-h-09-0-UI /FEA=EST /CNT=22 /TID=Rn.12204.1 /TIER=Stack /STK=13 /UG=Rn.12204 /UG_TITLE=ESTs BI296499 transmembrane 9 superfamily member 3 Tm9sf3 309475 XM_002725800 /// XM_220013 0016021 // integral to membrane // inferred from electronic annotation 0005488 // binding // not recorded 1398974_at AI171615 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171615 /DB_XREF=gi:3711655 /DB_XREF=EST217584 /CLONE=RMUBN26 /FEA=EST /CNT=23 /TID=Rn.36664.1 /TIER=Stack /STK=13 /UG=Rn.36664 /UG_TITLE=ESTs, Moderately similar to I39166 cellular apoptosis susceptibility protein CAS (H.sapiens) AI171615 CSE1 chromosome segregation 1-like (yeast) Cse1l 362273 NM_001108607 0006886 // intracellular protein transport // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008262 // importin-alpha export receptor activity // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 1398975_at BI281948 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281948 /DB_XREF=gi:14932209 /DB_XREF=UI-R-CU0s-cbu-e-09-0-UI.s1 /CLONE=UI-R-CU0s-cbu-e-09-0-UI /FEA=EST /CNT=19 /TID=Rn.13592.1 /TIER=Stack /STK=13 /UG=Rn.13592 /UG_TITLE=ESTs, Highly similar to I39383 angio-associated migratory cell protein (H.sapiens) BI281948 angio-associated, migratory cell protein Aamp 301512 NM_001106920 0014909 // smooth muscle cell migration // not recorded 0009986 // cell surface // not recorded 1398976_at AA848674 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA848674 /DB_XREF=gi:2936214 /DB_XREF=EST191434 /CLONE=RLUAC73 /FEA=EST /CNT=35 /TID=Rn.22385.1 /TIER=Stack /STK=13 /UG=Rn.22385 /UG_TITLE=ESTs, Highly similar to NCR1_RAT NUCLEAR RECEPTOR CO-REPRESSOR 1 (N-COR1) (N-COR) (R.norvegicus) AA848674 nuclear receptor co-repressor 1 Ncor1 54299 XM_001077495 /// XM_577103 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0002361 // CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation // inferred from electronic annotation /// 0002361 // CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010553 // negative regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0014067 // negative regulation of phosphoinositide 3-kinase cascade // inferred from electronic annotation /// 0014067 // negative regulation of phosphoinositide 3-kinase cascade // not recorded /// 0016481 // negative regulation of transcription // inferred from mutant phenotype /// 0016481 // negative regulation of transcription // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0021549 // cerebellum development // inferred from expression pattern /// 0021794 // thalamus development // inferred from electronic annotation /// 0021794 // thalamus development // not recorded /// 0031065 // positive regulation of histone deacetylation // inferred from electronic annotation /// 0031065 // positive regulation of histone deacetylation // not recorded /// 0032922 // circadian regulation of gene expression // inferred from electronic annotation /// 0032922 // circadian regulation of gene expression // not recorded /// 0040014 // regulation of multicellular organism growth // inferred from electronic annotation /// 0040014 // regulation of multicellular organism growth // not recorded /// 0042632 // cholesterol homeostasis // inferred from electronic annotation /// 0042632 // cholesterol homeostasis // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // not recorded /// 0045892 // negative regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0046329 // negative regulation of JNK cascade // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0051225 // spindle assembly // not recorded /// 0060318 // definitive erythrocyte differentiation // inferred from electronic annotation /// 0060318 // definitive erythrocyte differentiation // not recorded 0000118 // histone deacetylase complex // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded /// 0017053 // transcriptional repressor complex // not recorded /// 0044428 // nuclear part // inferred from electronic annotation /// 0044428 // nuclear part // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003714 // transcription corepressor activity // inferred from electronic annotation /// 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // non-traceable author statement /// 0005515 // protein binding // inferred from electronic annotation /// 0010843 // promoter binding // inferred from electronic annotation /// 0010843 // promoter binding // not recorded /// 0016564 // transcription repressor activity // not recorded /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from electronic annotation /// 0019904 // protein domain specific binding // not recorded /// 0035033 // histone deacetylase regulator activity // inferred from electronic annotation /// 0035033 // histone deacetylase regulator activity // not recorded /// 0042826 // histone deacetylase binding // not recorded /// 0042974 // retinoic acid receptor binding // not recorded /// 0042974 // retinoic acid receptor binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // not recorded /// 0046966 // thyroid hormone receptor binding // inferred from electronic annotation /// 0046966 // thyroid hormone receptor binding // not recorded 1398977_at BF558116 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF558116 /DB_XREF=gi:11667846 /DB_XREF=UI-R-C0-hl-c-04-0-UI.r1 /CLONE=UI-R-C0-hl-c-04-0-UI /FEA=EST /CNT=18 /TID=Rn.13035.1 /TIER=Stack /STK=13 /UG=Rn.13035 /UG_TITLE=ESTs BF558116 1398978_at AA850525 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA850525 /DB_XREF=gi:2938065 /DB_XREF=EST193292 /CLONE=ROVAG71 /FEA=EST /CNT=17 /TID=Rn.22067.1 /TIER=Stack /STK=13 /UG=Rn.22067 /UG_TITLE=ESTs AA850525 Adaptor-related protein complex 1, gamma 1 subunit Ap1g1 171494 NM_134460 0000226 // microtubule cytoskeleton organization // inferred from direct assay /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006892 // post-Golgi vesicle-mediated transport // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // cellular membrane organization // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // not recorded /// 0005802 // trans-Golgi network // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030131 // clathrin adaptor complex // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // not recorded /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0044431 // Golgi apparatus part // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005518 // collagen binding // inferred from physical interaction /// 0008022 // protein C-terminus binding // inferred from physical interaction /// 0008565 // protein transporter activity // inferred from electronic annotation 1398979_at BF405079 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405079 /DB_XREF=gi:11393054 /DB_XREF=UI-R-CA1-bip-d-03-0-UI.s1 /CLONE=UI-R-CA1-bip-d-03-0-UI /FEA=EST /CNT=20 /TID=Rn.62.1 /TIER=Stack /STK=13 /UG=Rn.62 /UG_TITLE=ESTs, Weakly similar to S70642 ubiquitin ligase Nedd4 - rat (R.norvegicus) BF405079 angel homolog 2 (Drosophila) Angel2 305035 NM_001135119 1398980_at AW253429 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW253429 /DB_XREF=gi:6597020 /DB_XREF=UI-R-BJ0-aen-g-08-0-UI.s1 /CLONE=UI-R-BJ0-aen-g-08-0-UI /FEA=EST /CNT=20 /TID=Rn.8723.1 /TIER=Stack /STK=13 /UG=Rn.8723 /UG_TITLE=ESTs AW253429 suppressor of Ty 16 homolog (S. cerevisiae) Supt16h 305851 NM_001107261 0009987 // cellular process // inferred from electronic annotation 0005654 // nucleoplasm // not recorded 0005525 // GTP binding // inferred from electronic annotation 1398981_at AI171951 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171951 /DB_XREF=gi:4134683 /DB_XREF=EST217945 /CLONE=RMUBT07 /FEA=EST /CNT=19 /TID=Rn.22310.1 /TIER=Stack /STK=13 /UG=Rn.22310 /UG_TITLE=ESTs, Highly similar to 15E1_HUMAN PROTEIN 15E1.1 (H.sapiens) AI171951 TP53 regulated inhibitor of apoptosis 1 Triap1 691278 NM_001126099 0006916 // anti-apoptosis // not recorded /// 0030330 // DNA damage response, signal transduction by p53 class mediator // not recorded 0005739 // mitochondrion // not recorded 0005515 // protein binding // not recorded /// 0043027 // caspase inhibitor activity // not recorded 1398982_at AI178239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178239 /DB_XREF=gi:3728877 /DB_XREF=EST221904 /CLONE=RPLCN87 /FEA=EST /CNT=17 /TID=Rn.4276.1 /TIER=Stack /STK=13 /UG=Rn.4276 /UG_TITLE=ESTs, Moderately similar to RAS-RELATED PROTEIN RAB-1A (R.norvegicus) AI178239 RAB1B, member RAS oncogene family Rab1b 100126191 NM_001109979 0006810 // transport // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1398983_at AW435012 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW435012 /DB_XREF=gi:6966319 /DB_XREF=UI-R-BJ0p-afv-f-04-0-UI.s1 /CLONE=UI-R-BJ0p-afv-f-04-0-UI /FEA=EST /CNT=19 /TID=Rn.7068.1 /TIER=Stack /STK=13 /UG=Rn.7068 /UG_TITLE=ESTs AW435012 mitochondrial ribosomal protein L30 Mrpl30 301352 NM_001106903 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1398984_at AA818129 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA818129 /DB_XREF=gi:4198643 /DB_XREF=UI-R-A0-am-h-10-0-UI.s1 /CLONE=UI-R-A0-am-h-10-0-UI /FEA=EST /CNT=15 /TID=Rn.1289.1 /TIER=Stack /STK=13 /UG=Rn.1289 /UG_TITLE=ESTs, Weakly similar to GTP-binding protein (Caenorhabditis elegans) (C.elegans) AA818129 TM2 domain containing 2 Tm2d2 290833 NM_001017444 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1398985_at AI716480 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716480 /DB_XREF=gi:5033733 /DB_XREF=UI-R-Y0-ach-e-10-0-UI.s1 /CLONE=UI-R-Y0-ach-e-10-0-UI /FEA=EST /CNT=15 /TID=Rn.24045.1 /TIER=Stack /STK=13 /UG=Rn.24045 /UG_TITLE=ESTs AI716480 GTP binding protein 1 Gtpbp1 300077 NM_001130496 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation 1398986_at AA944455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944455 /DB_XREF=gi:3104371 /DB_XREF=EST199954 /CLONE=REMAJ43 /FEA=EST /CNT=41 /TID=Rn.3775.1 /TIER=Stack /STK=12 /UG=Rn.3775 /UG_TITLE=ESTs, Moderately similar to I53063 testicular tumor overexpressed protein - mouse (M.musculus) AA944455 serine incorporator 3 Serinc3 296350 NM_001008312 0006658 // phosphatidylserine metabolic process // inferred from sequence or structural similarity /// 0006665 // sphingolipid metabolic process // inferred from sequence or structural similarity /// 0006917 // induction of apoptosis // not recorded /// 0015825 // L-serine transport // inferred from sequence or structural similarity /// 0051347 // positive regulation of transferase activity // inferred from sequence or structural similarity 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0015194 // L-serine transmembrane transporter activity // inferred from sequence or structural similarity 1398987_at AW141261 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW141261 /DB_XREF=gi:6161046 /DB_XREF=EST291302 /CLONE=RGIBJ70 /FEA=EST /CNT=26 /TID=Rn.7906.1 /TIER=Stack /STK=12 /UG=Rn.7906 /UG_TITLE=ESTs, Highly similar to SPT4_HUMAN TRANSCRIPTION INITIATION PROTEIN SPT4 HOMOLOG 1 (M.musculus) AW141261 suppressor of Ty 4 homolog 1 (S. cerevisiae) Supt4h1 287608 NM_001105828 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // inferred from electronic annotation /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008148 // negative transcription elongation factor activity // inferred from electronic annotation /// 0008148 // negative transcription elongation factor activity // not recorded /// 0008159 // positive transcription elongation factor activity // inferred from electronic annotation /// 0008159 // positive transcription elongation factor activity // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1398988_at BE110642 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE110642 /DB_XREF=gi:8502747 /DB_XREF=UI-R-BJ1-avu-d-01-0-UI.s1 /CLONE=UI-R-BJ1-avu-d-01-0-UI /FEA=EST /CNT=21 /TID=Rn.34341.2 /TIER=Stack /STK=12 /UG=Rn.34341 /LL=29304 /UG_GENE=Rps6 /UG_TITLE=ribosomal protein S6 BE110642 1398989_at BI275248 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275248 /DB_XREF=gi:14886906 /DB_XREF=UI-R-CX0-bwr-c-10-0-UI.s1 /CLONE=UI-R-CX0-bwr-c-10-0-UI /FEA=EST /CNT=20 /TID=Rn.15798.1 /TIER=Stack /STK=12 /UG=Rn.15798 /UG_TITLE=ESTs BI275248 Son DNA binding protein Son 304092 NM_001170327 /// NM_001170328 0006916 // anti-apoptosis // not recorded 0005622 // intracellular // inferred from electronic annotation 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0050733 // RS domain binding // not recorded 1398990_at BI281754 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281754 /DB_XREF=gi:14931827 /DB_XREF=UI-R-CU0s-cbs-b-04-0-UI.s1 /CLONE=UI-R-CU0s-cbs-b-04-0-UI /FEA=EST /CNT=20 /TID=Rn.12982.1 /TIER=Stack /STK=12 /UG=Rn.12982 /UG_TITLE=ESTs BI281754 1398991_at BM389704 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389704 /DB_XREF=gi:18189757 /DB_XREF=UI-R-CN1-cjp-e-12-0-UI.s1 /CLONE=UI-R-CN1-cjp-e-12-0-UI /FEA=EST /CNT=21 /TID=Rn.7282.1 /TIER=Stack /STK=12 /UG=Rn.7282 /UG_TITLE=ESTs BM389704 1398992_at AI410311 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410311 /DB_XREF=gi:4253815 /DB_XREF=EST238604 /CLONE=RKIDK77 /FEA=EST /CNT=23 /TID=Rn.2497.1 /TIER=Stack /STK=12 /UG=Rn.2497 /UG_TITLE=ESTs AI410311 1398993_at AI045458 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI045458 /DB_XREF=gi:3292277 /DB_XREF=UI-R-C1-jz-e-11-0-UI.s2 /CLONE=UI-R-C1-jz-e-11-0-UI /FEA=EST /CNT=16 /TID=Rn.17168.1 /TIER=Stack /STK=12 /UG=Rn.17168 /UG_TITLE=ESTs, Highly similar to I55595 splicing factor (H.sapiens) AI045458 RNA binding motif protein 39 Rbm39 362251 NM_001013207 0006397 // mRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1398994_at BI301193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301193 /DB_XREF=gi:14977473 /DB_XREF=UI-R-DK0-cdx-e-03-0-UI.s2 /CLONE=UI-R-DK0-cdx-e-03-0-UI /FEA=EST /CNT=16 /TID=Rn.3659.1 /TIER=Stack /STK=12 /UG=Rn.3659 /UG_TITLE=ESTs, Highly similar to protein-tyrosine sulfotransferase 2 (Mus musculus) (M.musculus) BI301193 tyrosylprotein sulfotransferase 2 Tpst2 288719 NM_001008508 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0008476 // protein-tyrosine sulfotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1398995_at BM389233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389233 /DB_XREF=gi:18189286 /DB_XREF=UI-R-DZ0-cko-k-06-0-UI.s1 /CLONE=UI-R-DZ0-cko-k-06-0-UI /FEA=EST /CNT=14 /TID=Rn.17774.1 /TIER=Stack /STK=12 /UG=Rn.17774 /UG_TITLE=ESTs, Weakly similar to T46436 hypothetical protein DKFZp434I1926.1 (H.sapiens) BM389233 ubiquitin interaction motif containing 1 Uimc1 290997 NM_001013884 0006281 // DNA repair // inferred from electronic annotation /// 0006302 // double-strand break repair // not recorded /// 0006302 // double-strand break repair // inferred from sequence or structural similarity /// 0006350 // transcription // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0010212 // response to ionizing radiation // not recorded /// 0010212 // response to ionizing radiation // inferred from sequence or structural similarity /// 0016481 // negative regulation of transcription // not recorded /// 0016568 // chromatin modification // inferred from electronic annotation /// 0031572 // G2/M transition DNA damage checkpoint // not recorded /// 0031572 // G2/M transition DNA damage checkpoint // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045739 // positive regulation of DNA repair // not recorded /// 0045739 // positive regulation of DNA repair // inferred from sequence or structural similarity /// 0070537 // histone H2A K63-linked deubiquitination // not recorded /// 0070537 // histone H2A K63-linked deubiquitination // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0070531 // BRCA1-A complex // not recorded /// 0070531 // BRCA1-A complex // inferred from sequence or structural similarity 0005515 // protein binding // not recorded /// 0042393 // histone binding // not recorded /// 0042393 // histone binding // inferred from sequence or structural similarity /// 0046965 // retinoid X receptor binding // inferred from electronic annotation /// 0046965 // retinoid X receptor binding // not recorded /// 0070530 // K63-linked polyubiquitin binding // not recorded /// 0070530 // K63-linked polyubiquitin binding // inferred from sequence or structural similarity 1398996_at AI007987 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI007987 /DB_XREF=gi:3221819 /DB_XREF=EST202438 /CLONE=REMAI09 /FEA=EST /CNT=14 /TID=Rn.3618.1 /TIER=Stack /STK=12 /UG=Rn.3618 /UG_TITLE=ESTs AI007987 similar to AP-3 complex subunit sigma-2 (Adapter-related protein complex 3 sigma-2 subunit) (Sigma-adaptin 3b) (AP-3 complex sigma-3B subunit) (Sigma-3B-adaptin) LOC683402 683402 NM_001115039 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0030117 // membrane coat // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0008565 // protein transporter activity // inferred from electronic annotation 1398997_at AI102252 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102252 /DB_XREF=gi:3707053 /DB_XREF=EST211541 /CLONE=RBRCB14 /FEA=EST /CNT=14 /TID=Rn.35198.1 /TIER=Stack /STK=12 /UG=Rn.35198 /UG_TITLE=ESTs, Highly similar to S63993 acrosomal protein AZ1 - mouse (M.musculus) AI102252 phosphohistidine phosphatase 1 Phpt1 296571 NM_001106558 1398998_at AI407273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407273 /DB_XREF=gi:4250777 /DB_XREF=EST235561 /CLONE=ROVDQ79 /FEA=EST /CNT=13 /TID=Rn.13312.1 /TIER=Stack /STK=12 /UG=Rn.13312 /UG_TITLE=ESTs AI407273 similar to CG4768-PA RGD1309748 302913 NM_001106972 1398999_at BF283508 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283508 /DB_XREF=gi:11214578 /DB_XREF=EST448099 /CLONE=RGIED29 /FEA=EST /CNT=13 /TID=Rn.18356.1 /TIER=Stack /STK=12 /UG=Rn.18356 /UG_TITLE=ESTs BF283508 StAR-related lipid transfer (START) domain containing 3 Stard3 363675 NM_001014229 0006694 // steroid biosynthetic process // inferred from electronic annotation 0015485 // cholesterol binding // inferred from electronic annotation /// 0015485 // cholesterol binding // not recorded /// 0017127 // cholesterol transporter activity // inferred from electronic annotation 1399000_at AI233289 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI233289 /DB_XREF=gi:3817169 /DB_XREF=EST229977 /CLONE=RKIDD24 /FEA=EST /CNT=12 /TID=Rn.5861.1 /TIER=Stack /STK=12 /UG=Rn.5861 /UG_TITLE=ESTs AI233289 ATPase, class II, type 9B Atp9b 291411 NM_001106130 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0015914 // phospholipid transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004012 // phospholipid-translocating ATPase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0015662 // ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016820 // hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances // inferred from electronic annotation 1399001_at BI285943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285943 /DB_XREF=gi:14940098 /DB_XREF=UI-R-CX0s-ccp-f-04-0-UI.s1 /CLONE=UI-R-CX0s-ccp-f-04-0-UI /FEA=EST /CNT=23 /TID=Rn.233.1 /TIER=Stack /STK=11 /UG=Rn.233 /UG_TITLE=ESTs, Weakly similar to CAFA_MOUSE Chromatin assembly factor 1 subunit A (CAF-1 subunit A) (Chromatin assembly factor I p150 subunit) (CAF-I 150 kDa subunit) (CAF-Ip150) (M.musculus) BI285943 hypothetical LOC294030 RGD1305481 294030 NM_001047856 1399002_at BM384239 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384239 /DB_XREF=gi:18184292 /DB_XREF=UI-R-DZ0-cks-e-05-0-UI.s1 /CLONE=UI-R-DZ0-cks-e-05-0-UI /FEA=EST /CNT=24 /TID=Rn.3292.1 /TIER=Stack /STK=11 /UG=Rn.3292 /UG_TITLE=ESTs, Moderately similar to mitochondrial ribosomal protein S17 (Mus musculus) (M.musculus) BM384239 mitochondrial ribosomal protein S17 Mrps17 288621 NM_001105923 0006412 // translation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation 1399003_at BE116554 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116554 /DB_XREF=gi:8508659 /DB_XREF=UI-R-BS1-ayj-f-02-0-UI.s1 /CLONE=UI-R-BS1-ayj-f-02-0-UI /FEA=EST /CNT=16 /TID=Rn.12291.1 /TIER=Stack /STK=11 /UG=Rn.12291 /UG_TITLE=ESTs BE116554 coiled-coil domain containing 47 Ccdc47 303606 NM_001013974 0006983 // ER overload response // inferred from electronic annotation /// 0006983 // ER overload response // not recorded /// 0009790 // embryo development // inferred from electronic annotation /// 0009790 // embryo development // not recorded /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0009791 // post-embryonic development // not recorded /// 0055074 // calcium ion homeostasis // inferred from electronic annotation /// 0055074 // calcium ion homeostasis // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1399004_at BM986309 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM986309 /DB_XREF=gi:19705698 /DB_XREF=EST531217 /CLONE=RGIAE34 /FEA=EST /CNT=15 /TID=Rn.3356.1 /TIER=Stack /STK=11 /UG=Rn.3356 /UG_TITLE=ESTs, Weakly similar to T20985 hypothetical protein F15D4.3 - Caenorhabditis elegans (C.elegans) BM986309 reactive oxygen species modulator 1 Romo1 679572 NM_001195490 /// XM_001053409 /// XM_002726261 0001302 // replicative cell aging // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0010670 // positive regulation of oxygen and reactive oxygen species metabolic process // not recorded /// 0034614 // cellular response to reactive oxygen species // not recorded 0005739 // mitochondrion // not recorded 1399005_at BG673380 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG673380 /DB_XREF=gi:13895479 /DB_XREF=DRNBTH09 /CLONE=DRNBTH09 /FEA=EST /CNT=14 /TID=Rn.1519.1 /TIER=Stack /STK=11 /UG=Rn.1519 /UG_TITLE=ESTs BG673380 protein phosphatase 2, regulatory subunit B', alpha isoform Ppp2r5a 312754 NM_001107891 0007165 // signal transduction // inferred from electronic annotation 0000159 // protein phosphatase type 2A complex // inferred from electronic annotation /// 0000159 // protein phosphatase type 2A complex // not recorded /// 0005624 // membrane fraction // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008601 // protein phosphatase type 2A regulator activity // inferred from electronic annotation 1399006_at BI285826 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285826 /DB_XREF=gi:14939865 /DB_XREF=UI-R-CX0s-ccv-c-11-0-UI.s1 /CLONE=UI-R-CX0s-ccv-c-11-0-UI /FEA=EST /CNT=11 /TID=Rn.10845.1 /TIER=Stack /STK=11 /UG=Rn.10845 /UG_TITLE=ESTs, Highly similar to USF1 MOUSE UPSTREAM STIMULATORY FACTOR 1 (M.musculus) BI285826 upstream transcription factor 1 Usf1 83586 NM_031777 0000432 // positive regulation of transcription from RNA polymerase II promoter by glucose // not recorded /// 0001666 // response to hypoxia // inferred from electronic annotation /// 0001666 // response to hypoxia // not recorded /// 0006006 // glucose metabolic process // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0010552 // positive regulation of gene-specific transcription from RNA polymerase II promoter // not recorded /// 0019086 // late viral mRNA transcription // inferred from electronic annotation /// 0019086 // late viral mRNA transcription // not recorded /// 0032869 // cellular response to insulin stimulus // inferred from electronic annotation /// 0032869 // cellular response to insulin stimulus // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0005667 // transcription factor complex // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0003705 // sequence-specific enhancer binding RNA polymerase II transcription factor activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0019899 // enzyme binding // not recorded /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from electronic annotation /// 0019901 // protein kinase binding // not recorded /// 0030528 // transcription regulator activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0042826 // histone deacetylase binding // inferred from electronic annotation /// 0042826 // histone deacetylase binding // not recorded /// 0043425 // bHLH transcription factor binding // inferred from electronic annotation /// 0043425 // bHLH transcription factor binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded 1399007_at BF557930 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF557930 /DB_XREF=gi:11667618 /DB_XREF=UI-R-C0-he-b-04-0-UI.r1 /CLONE=UI-R-C0-he-b-04-0-UI /FEA=EST /CNT=11 /TID=Rn.2611.2 /TIER=Stack /STK=11 /UG=Rn.2611 /UG_TITLE=ESTs, Moderately similar to A53542 brefeldin A-sensitive Golgi protein LDLC (H.sapiens) BF557930 component of oligomeric golgi complex 2 Cog2 690961 NM_001110494 0006891 // intra-Golgi vesicle-mediated transport // not recorded /// 0007030 // Golgi organization // inferred from electronic annotation /// 0007030 // Golgi organization // not recorded /// 0015031 // protein transport // inferred from electronic annotation 0005795 // Golgi stack // not recorded /// 0005829 // cytosol // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0017119 // Golgi transport complex // inferred from direct assay /// 0017119 // Golgi transport complex // not recorded 0005515 // protein binding // not recorded /// 0008565 // protein transporter activity // not recorded /// 0032403 // protein complex binding // inferred from direct assay 1399008_at AW434064 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW434064 /DB_XREF=gi:6965371 /DB_XREF=UI-R-BJ0p-afo-h-01-0-UI.s1 /CLONE=UI-R-BJ0p-afo-h-01-0-UI /FEA=EST /CNT=11 /TID=Rn.8442.1 /TIER=Stack /STK=11 /UG=Rn.8442 /UG_TITLE=ESTs AW434064 ankyrin repeat domain 17 Ankrd17 289521 NM_001105999 0003723 // RNA binding // inferred from electronic annotation 1399009_at BE329028 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE329028 /DB_XREF=gi:9202804 /DB_XREF=hq32g11.x1 /CLONE=IMAGE:3121124 /FEA=EST /CNT=11 /TID=Rn.1948.1 /TIER=Stack /STK=11 /UG=Rn.1948 /UG_TITLE=ESTs BE329028 integrator complex subunit 4 Ints4 308837 NM_001191629 /// XM_002725694 /// XM_218937 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016180 // snRNA processing // not recorded /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0030117 // membrane coat // inferred from electronic annotation /// 0032039 // integrator complex // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1399010_at BG381740 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381740 /DB_XREF=gi:13306212 /DB_XREF=UI-R-CT0-bue-h-10-0-UI.s1 /CLONE=UI-R-CT0-bue-h-10-0-UI /FEA=EST /CNT=20 /TID=Rn.1921.1 /TIER=Stack /STK=10 /UG=Rn.1921 /UG_TITLE=ESTs, Highly similar to COP9 complex subunit 7a (M.musculus) BG381740 COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis) Cops7a 312710 NM_001047098 /// NM_001164091 1399011_at AI409481 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI409481 /DB_XREF=gi:4252985 /DB_XREF=EST237773 /CLONE=RKIDU08 /FEA=EST /CNT=18 /TID=Rn.35643.1 /TIER=Stack /STK=10 /UG=Rn.35643 /UG_TITLE=ESTs, Weakly similar to 26S PROTEASOME REGULATORY SUBUNIT S12 (M.musculus) AI409481 COP9 constitutive photomorphogenic homolog subunit 6 (Arabidopsis) Cops6 304343 NM_001107129 0008180 // signalosome // not recorded 0005515 // protein binding // not recorded 1399012_at BI285976 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285976 /DB_XREF=gi:14940164 /DB_XREF=UI-R-CX0s-ccu-a-07-0-UI.s1 /CLONE=UI-R-CX0s-ccu-a-07-0-UI /FEA=EST /CNT=18 /TID=Rn.3458.2 /TIER=Stack /STK=10 /UG=Rn.3458 /UG_TITLE=ESTs, Highly similar to 60S RIBOSOMAL PROTEIN L35 (R.norvegicus) BI285976 transmembrane protein 59 Tmem59 100196907 NM_001139465 1399013_at AI412609 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI412609 /DB_XREF=gi:4256113 /DB_XREF=EST240908 /CLONE=RBRDK55 /FEA=EST /CNT=18 /TID=Rn.13442.1 /TIER=Stack /STK=10 /UG=Rn.13442 /UG_TITLE=ESTs, Weakly similar to S64253 probable membrane protein YGL231c - yeast (Saccharomyces cerevisiae) (S.cerevisiae) AI412609 transmembrane protein 85 Tmem85 296049 NM_001106495 1399014_at AA894099 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894099 /DB_XREF=gi:3020978 /DB_XREF=EST197902 /CLONE=RSPAQ77 /FEA=EST /CNT=18 /TID=Rn.12477.1 /TIER=Stack /STK=10 /UG=Rn.12477 /UG_TITLE=ESTs, Moderately similar to SKD1 MOUSE SKD1 PROTEIN (M.musculus) AA894099 1399015_at BI281753 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281753 /DB_XREF=gi:14931825 /DB_XREF=UI-R-CU0s-cbs-b-03-0-UI.s1 /CLONE=UI-R-CU0s-cbs-b-03-0-UI /FEA=EST /CNT=16 /TID=Rn.4107.1 /TIER=Stack /STK=10 /UG=Rn.4107 /UG_TITLE=ESTs BI281753 1399016_at BG671507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG671507 /DB_XREF=gi:13893606 /DB_XREF=DRNBTC05 /CLONE=DRNBTC05 /FEA=EST /CNT=14 /TID=Rn.12618.1 /TIER=Stack /STK=10 /UG=Rn.12618 /UG_TITLE=ESTs BG671507 MYST histone acetyltransferase 2 Myst2 303470 NM_181081 0006260 // DNA replication // not recorded /// 0006260 // DNA replication // inferred from sequence or structural similarity /// 0006260 // DNA replication // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0043966 // histone H3 acetylation // not recorded /// 0043966 // histone H3 acetylation // inferred from sequence or structural similarity /// 0043966 // histone H3 acetylation // inferred from electronic annotation /// 0043981 // histone H4-K5 acetylation // not recorded /// 0043981 // histone H4-K5 acetylation // inferred from sequence or structural similarity /// 0043981 // histone H4-K5 acetylation // inferred from electronic annotation /// 0043982 // histone H4-K8 acetylation // not recorded /// 0043982 // histone H4-K8 acetylation // inferred from sequence or structural similarity /// 0043982 // histone H4-K8 acetylation // inferred from electronic annotation /// 0043983 // histone H4-K12 acetylation // not recorded /// 0043983 // histone H4-K12 acetylation // inferred from sequence or structural similarity /// 0043983 // histone H4-K12 acetylation // inferred from electronic annotation /// 0043984 // histone H4-K16 acetylation // not recorded /// 0043984 // histone H4-K16 acetylation // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation 0000123 // histone acetyltransferase complex // not recorded /// 0000123 // histone acetyltransferase complex // inferred from sequence or structural similarity /// 0000123 // histone acetyltransferase complex // inferred from electronic annotation /// 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005654 // nucleoplasm // inferred from sequence or structural similarity /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from sequence or structural similarity 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016747 // transferase activity, transferring acyl groups other than amino-acyl groups // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1399017_at AI234040 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234040 /DB_XREF=gi:3817920 /DB_XREF=EST230728 /CLONE=RLUCU43 /FEA=EST /CNT=14 /TID=Rn.13287.1 /TIER=Stack /STK=10 /UG=Rn.13287 /UG_TITLE=ESTs AI234040 1399018_at AI410301 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410301 /DB_XREF=gi:4253805 /DB_XREF=EST238594 /CLONE=RKIDK49 /FEA=EST /CNT=13 /TID=Rn.7031.1 /TIER=Stack /STK=10 /UG=Rn.7031 /UG_TITLE=ESTs AI410301 LUC7-like 3 (S. cerevisiae) Luc7l3 360602 NM_001108291 0006915 // apoptosis // not recorded /// 0006950 // response to stress // not recorded /// 0008380 // RNA splicing // not recorded 0005634 // nucleus // not recorded 0003729 // mRNA binding // not recorded /// 0005515 // protein binding // not recorded 1399019_at AI407868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407868 /DB_XREF=gi:4251372 /DB_XREF=EST236158 /CLONE=ROVEC69 /FEA=EST /CNT=13 /TID=Rn.1831.1 /TIER=Stack /STK=10 /UG=Rn.1831 /UG_TITLE=ESTs, Weakly similar to C37H5.3.p (Caenorhabditis elegans) (C.elegans) AI407868 abhydrolase domain containing 4 Abhd4 364380 NM_001108866 0016787 // hydrolase activity // inferred from electronic annotation 1399020_at AI232979 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232979 /DB_XREF=gi:3816859 /DB_XREF=EST229667 /CLONE=RKICJ44 /FEA=EST /CNT=13 /TID=Rn.8797.1 /TIER=Stack /STK=10 /UG=Rn.8797 /UG_TITLE=ESTs AI232979 family with sequence similarity 40, member A Fam40a 362012 XM_001068288 /// XM_342311 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1399021_at BI291269 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI291269 /DB_XREF=gi:14950653 /DB_XREF=UI-R-CV2-cgn-e-08-0-UI.s1 /CLONE=UI-R-CV2-cgn-e-08-0-UI /FEA=EST /CNT=12 /TID=Rn.18429.1 /TIER=Stack /STK=10 /UG=Rn.18429 /UG_TITLE=ESTs BI291269 PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae) Prpf18 171552 NM_138523 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0016607 // nuclear speck // inferred from electronic annotation 0019870 // potassium channel inhibitor activity // inferred from mutant phenotype 1399022_at AI177513 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI177513 /DB_XREF=gi:3728151 /DB_XREF=EST221145 /CLONE=RPLCA93 /FEA=EST /CNT=12 /TID=Rn.36770.1 /TIER=Stack /STK=10 /UG=Rn.36770 /UG_TITLE=ESTs, Weakly similar to CLK3 RAT PROTEIN KINASE CLK3 (R.norvegicus) AI177513 CDC-like kinase 1 Clk1 301434 NM_001106913 0006468 // protein phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0018107 // peptidyl-threonine phosphorylation // not recorded /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0046777 // protein autophosphorylation // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1399023_at AA893641 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893641 /DB_XREF=gi:3020520 /DB_XREF=EST197444 /CLONE=RPLAC90 /FEA=EST /CNT=12 /TID=Rn.15753.1 /TIER=Stack /STK=10 /UG=Rn.15753 /UG_TITLE=ESTs, Highly similar to Wnt-5a protein (Rattus norvegicus) (R.norvegicus) AA893641 resistance to inhibitors of cholinesterase 8 homolog A (C. elegans) Ric8a 293614 NM_001100520 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0008542 // visual learning // inferred from electronic annotation /// 0008542 // visual learning // not recorded /// 0009416 // response to light stimulus // inferred from electronic annotation /// 0009416 // response to light stimulus // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0001965 // G-protein alpha-subunit binding // inferred from physical interaction /// 0001965 // G-protein alpha-subunit binding // inferred from direct assay /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from direct assay /// 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation 1399024_at AI180441 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180441 /DB_XREF=gi:4135247 /DB_XREF=EST224187 /CLONE=RSPCX74 /FEA=EST /CNT=12 /TID=Rn.37338.1 /TIER=Stack /STK=10 /UG=Rn.37338 /UG_TITLE=ESTs, Highly similar to T17298 hypothetical protein DKFZp586M2123.1 (H.sapiens) AI180441 SCY1-like 1 (S. cerevisiae) Scyl1 293684 NM_001011938 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // not recorded /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // inferred from sequence or structural similarity /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005793 // ER-Golgi intermediate compartment // not recorded /// 0005793 // ER-Golgi intermediate compartment // inferred from sequence or structural similarity /// 0005793 // ER-Golgi intermediate compartment // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005801 // cis-Golgi network // not recorded /// 0005801 // cis-Golgi network // inferred from sequence or structural similarity /// 0005801 // cis-Golgi network // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030126 // COPI vesicle coat // inferred from electronic annotation /// 0030126 // COPI vesicle coat // not recorded 0004672 // protein kinase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation 1399025_at AW916140 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW916140 /DB_XREF=gi:8081858 /DB_XREF=EST347444 /CLONE=RGIDI55 /FEA=EST /CNT=11 /TID=Rn.36542.1 /TIER=Stack /STK=10 /UG=Rn.36542 /UG_TITLE=ESTs AW916140 mesoderm induction early response 1 homolog (Xenopus laevis) Mier1 313418 NM_001131012 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0004871 // signal transducer activity // not recorded 1399026_at AI178191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178191 /DB_XREF=gi:3728829 /DB_XREF=EST221856 /CLONE=RPLCN35 /FEA=EST /CNT=62 /TID=Rn.1073.1 /TIER=Stack /STK=9 /UG=Rn.1073 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) AI178191 poly(A) binding protein interacting protein 2 Paip2 361309 NM_001014148 0006417 // regulation of translation // inferred from electronic annotation /// 0045947 // negative regulation of translational initiation // not recorded 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0030371 // translation repressor activity // not recorded 1399027_at AI408053 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI408053 /DB_XREF=gi:4251557 /DB_XREF=EST236343 /CLONE=RPLDK46 /FEA=EST /CNT=31 /TID=Rn.17947.2 /TIER=Stack /STK=9 /UG=Rn.17947 /LL=117273 /UG_GENE=Arha2 /UG_TITLE=plysia ras-related homolog A2 AI408053 ras homolog gene family, member A Rhoa 117273 NM_057132 0000902 // cell morphogenesis // not recorded /// 0001666 // response to hypoxia // inferred from expression pattern /// 0006184 // GTP catabolic process // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0007155 // cell adhesion // not recorded /// 0007160 // cell-matrix adhesion // not recorded /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007519 // skeletal muscle tissue development // not recorded /// 0008064 // regulation of actin polymerization or depolymerization // inferred from expression pattern /// 0009612 // response to mechanical stimulus // inferred from expression pattern /// 0009749 // response to glucose stimulus // inferred from expression pattern /// 0030036 // actin cytoskeleton organization // not recorded /// 0030036 // actin cytoskeleton organization // traceable author statement /// 0030154 // cell differentiation // not recorded /// 0030307 // positive regulation of cell growth // inferred from expression pattern /// 0030307 // positive regulation of cell growth // inferred from mutant phenotype /// 0030335 // positive regulation of cell migration // inferred from expression pattern /// 0030521 // androgen receptor signaling pathway // not recorded /// 0030838 // positive regulation of actin filament polymerization // inferred from mutant phenotype /// 0031098 // stress-activated protein kinase signaling cascade // inferred from mutant phenotype /// 0033144 // negative regulation of steroid hormone receptor signaling pathway // not recorded /// 0042493 // response to drug // inferred from direct assay /// 0042493 // response to drug // inferred from expression pattern /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from sequence or structural similarity /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB cascade // inferred from mutant phenotype /// 0043149 // stress fiber assembly // not recorded /// 0043200 // response to amino acid stimulus // inferred from expression pattern /// 0043280 // positive regulation of caspase activity // inferred from mutant phenotype /// 0043524 // negative regulation of neuron apoptosis // not recorded /// 0043525 // positive regulation of neuron apoptosis // inferred from mutant phenotype /// 0045471 // response to ethanol // inferred from expression pattern /// 0045665 // negative regulation of neuron differentiation // inferred from mutant phenotype /// 0045666 // positive regulation of neuron differentiation // inferred from electronic annotation /// 0045666 // positive regulation of neuron differentiation // not recorded /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0045727 // positive regulation of translation // inferred from expression pattern /// 0045785 // positive regulation of cell adhesion // inferred from expression pattern /// 0045907 // positive regulation of vasoconstriction // inferred from expression pattern /// 0045987 // positive regulation of smooth muscle contraction // inferred from mutant phenotype /// 0048812 // neuron projection morphogenesis // inferred from expression pattern /// 0050770 // regulation of axonogenesis // not recorded /// 0050771 // negative regulation of axonogenesis // not recorded /// 0050772 // positive regulation of axonogenesis // not recorded /// 0050773 // regulation of dendrite development // inferred from mutant phenotype /// 0051384 // response to glucocorticoid stimulus // inferred from expression pattern /// 0051496 // positive regulation of stress fiber assembly // inferred from electronic annotation /// 0051496 // positive regulation of stress fiber assembly // not recorded /// 0051927 // negative regulation of calcium ion transport via voltage-gated calcium channel activity // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // not recorded /// 0003924 // GTPase activity // non-traceable author statement /// 0003924 // GTPase activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // traceable author statement /// 0005525 // GTP binding // inferred from electronic annotation /// 0017022 // myosin binding // inferred from electronic annotation /// 0017022 // myosin binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction 1399028_at AI171954 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171954 /DB_XREF=gi:3711994 /DB_XREF=EST217948 /CLONE=RMUBT10 /FEA=EST /CNT=16 /TID=Rn.4015.1 /TIER=Stack /STK=9 /UG=Rn.4015 /UG_TITLE=ESTs AI171954 zinc finger CCCH-type containing 11A Zc3h11a 360845 NM_001047902 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1399029_at BI285965 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285965 /DB_XREF=gi:14940142 /DB_XREF=UI-R-CX0s-ccp-h-06-0-UI.s1 /CLONE=UI-R-CX0s-ccp-h-06-0-UI /FEA=EST /CNT=17 /TID=Rn.79.1 /TIER=Stack /STK=9 /UG=Rn.79 /UG_TITLE=ESTs BI285965 ubiquitin specific peptidase 48 Usp48 362636 NM_198785 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0045121 // membrane raft // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from direct assay 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1399030_at AA800682 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA800682 /DB_XREF=gi:4131529 /DB_XREF=EST190179 /CLONE=RLUAK25 /FEA=EST /CNT=13 /TID=Rn.25900.1 /TIER=Stack /STK=9 /UG=Rn.25900 /UG_TITLE=ESTs, Weakly similar to T12539 hypothetical protein DKFZp434J154.1 (H.sapiens) AA800682 WD repeat domain 45 Wdr45 302559 NM_001013958 1399031_at BM391360 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391360 /DB_XREF=gi:18191413 /DB_XREF=UI-R-DY0-ckq-f-22-0-UI.s1 /CLONE=UI-R-DY0-ckq-f-22-0-UI /FEA=EST /CNT=13 /TID=Rn.8400.3 /TIER=Stack /STK=9 /UG=Rn.8400 /LL=65139 /UG_GENE=Rps12 /UG_TITLE=ribosomal protein S12 BM391360 DET1 and DDB1 associated 1 Dda1 688813 NM_001134790 1399032_at AA892791 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA892791 /DB_XREF=gi:3019670 /DB_XREF=EST196594 /CLONE=RKIAX34 /FEA=EST /CNT=12 /TID=Rn.7320.1 /TIER=Stack /STK=9 /UG=Rn.7320 /UG_TITLE=ESTs, Highly similar to ERC1 MOUSE DNA EXCISION REPAIR PROTEIN ERCC-1 (M.musculus) AA892791 excision repair cross-complementing rodent repair deficiency, complementation group 1 Ercc1 292673 NM_001106228 0000718 // nucleotide-excision repair, DNA damage removal // not recorded /// 0000720 // pyrimidine dimer repair by nucleotide-excision repair // not recorded /// 0001302 // replicative cell aging // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006281 // DNA repair // not recorded /// 0006289 // nucleotide-excision repair // not recorded /// 0006295 // nucleotide-excision repair, DNA incision, 3'-to lesion // not recorded /// 0006296 // nucleotide-excision repair, DNA incision, 5'-to lesion // not recorded /// 0006302 // double-strand break repair // not recorded /// 0006310 // DNA recombination // not recorded /// 0006312 // mitotic recombination // not recorded /// 0006949 // syncytium formation // not recorded /// 0006974 // response to DNA damage stimulus // not recorded /// 0006979 // response to oxidative stress // not recorded /// 0007281 // germ cell development // not recorded /// 0007283 // spermatogenesis // not recorded /// 0007584 // response to nutrient // inferred from expression pattern /// 0008283 // cell proliferation // not recorded /// 0008584 // male gonad development // not recorded /// 0009628 // response to abiotic stimulus // inferred from expression pattern /// 0009650 // UV protection // not recorded /// 0009744 // response to sucrose stimulus // inferred from expression pattern /// 0010165 // response to X-ray // not recorded /// 0010259 // multicellular organismal aging // not recorded /// 0032205 // negative regulation of telomere maintenance // not recorded /// 0035166 // post-embryonic hemopoiesis // not recorded /// 0035264 // multicellular organism growth // not recorded /// 0043066 // negative regulation of apoptosis // not recorded /// 0045190 // isotype switching // not recorded /// 0048468 // cell development // not recorded /// 0048477 // oogenesis // not recorded /// 0048568 // embryonic organ development // inferred from expression pattern /// 0051276 // chromosome organization // not recorded 0000109 // nucleotide-excision repair complex // not recorded /// 0000784 // nuclear chromosome, telomeric region // not recorded /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0000014 // single-stranded DNA specific endodeoxyribonuclease activity // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // not recorded /// 0003697 // single-stranded DNA binding // not recorded /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008022 // protein C-terminus binding // not recorded /// 0019904 // protein domain specific binding // not recorded /// 0043566 // structure-specific DNA binding // not recorded 1399033_at AA945869 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA945869 /DB_XREF=gi:4132629 /DB_XREF=EST201368 /CLONE=RLUAW28 /FEA=EST /CNT=15 /TID=Rn.7308.1 /TIER=Stack /STK=9 /UG=Rn.7308 /UG_TITLE=ESTs AA945869 core-binding factor, beta subunit Cbfb 361391 NM_001013191 0001503 // ossification // not recorded /// 0001503 // ossification // inferred from electronic annotation /// 0001649 // osteoblast differentiation // inferred from electronic annotation /// 0001649 // osteoblast differentiation // not recorded /// 0030098 // lymphocyte differentiation // inferred from electronic annotation /// 0030098 // lymphocyte differentiation // not recorded /// 0030099 // myeloid cell differentiation // inferred from electronic annotation /// 0030099 // myeloid cell differentiation // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0048469 // cell maturation // inferred from electronic annotation /// 0048469 // cell maturation // not recorded /// 0060216 // definitive hemopoiesis // inferred from electronic annotation /// 0060216 // definitive hemopoiesis // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1399034_at AI009650 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009650 /DB_XREF=gi:3223482 /DB_XREF=EST204101 /CLONE=RLUBG77 /FEA=EST /CNT=12 /TID=Rn.23381.1 /TIER=Stack /STK=9 /UG=Rn.23381 /UG_TITLE=ESTs AI009650 pecanex homolog (Drosophila) Pcnx 314288 NM_001170347 0016021 // integral to membrane // inferred from electronic annotation 1399035_at BE097233 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE097233 /DB_XREF=gi:8488164 /DB_XREF=UI-R-BO1-apu-h-03-0-UI.s1 /CLONE=UI-R-BO1-apu-h-03-0-UI /FEA=EST /CNT=11 /TID=Rn.13037.1 /TIER=Stack /STK=9 /UG=Rn.13037 /UG_TITLE=ESTs BE097233 polymerase (RNA) III (DNA directed) polypeptide H Polr3h 300088 NM_001127295 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006139 // nucleobase, nucleoside, nucleotide and nucleic acid metabolic process // not recorded /// 0006350 // transcription // inferred from electronic annotation /// 0006383 // transcription from RNA polymerase III promoter // inferred from electronic annotation /// 0006383 // transcription from RNA polymerase III promoter // not recorded 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005666 // DNA-directed RNA polymerase III complex // inferred from electronic annotation /// 0005666 // DNA-directed RNA polymerase III complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // not recorded 1399036_at AA964374 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964374 /DB_XREF=gi:4279249 /DB_XREF=UI-R-C0-gw-h-03-0-UI.s1 /CLONE=UI-R-C0-gw-h-03-0-UI /FEA=EST /CNT=11 /TID=Rn.11794.1 /TIER=Stack /STK=9 /UG=Rn.11794 /UG_TITLE=ESTs AA964374 ubiquitin specific peptidase 47 Usp47 308896 NM_001107542 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1399037_at AI227962 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI227962 /DB_XREF=gi:3811849 /DB_XREF=EST224657 /CLONE=RBRCO12 /FEA=EST /CNT=11 /TID=Rn.25238.1 /TIER=Stack /STK=9 /UG=Rn.25238 /UG_TITLE=ESTs AI227962 tetratricopeptide repeat domain 19 Ttc19 691506 NM_001109644 0005739 // mitochondrion // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1399038_at AA893224 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA893224 /DB_XREF=gi:3020103 /DB_XREF=EST197027 /CLONE=RKIBD72 /FEA=EST /CNT=11 /TID=Rn.13484.1 /TIER=Stack /STK=9 /UG=Rn.13484 /UG_TITLE=ESTs, Highly similar to UBPJ_HUMAN Ubiquitin carboxyl-terminal hydrolase 19 (Ubiquitin thiolesterase 19) (Ubiquitin-specific processing protease 19) (Deubiquitinating enzyme 19) (H.sapiens) AA893224 ubiquitin specific peptidase 19 Usp19 361190 NM_001001516 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0051726 // regulation of cell cycle // not recorded 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1399039_at BM383865 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383865 /DB_XREF=gi:18183918 /DB_XREF=UI-R-DM1-ckc-e-22-0-UI.s1 /CLONE=UI-R-DM1-ckc-e-22-0-UI /FEA=EST /CNT=11 /TID=Rn.64723.1 /TIER=Stack /STK=9 /UG=Rn.64723 /UG_TITLE=ESTs, Weakly similar to DnaJ (Hsp40) homolog, subfamily A, member 2 (Rattus norvegicus) (R.norvegicus) BM383865 DnaJ (Hsp40) homolog, subfamily B, member 2 Dnajb2 689593 NM_001109541 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from electronic annotation /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0030308 // negative regulation of cell growth // not recorded /// 0030308 // negative regulation of cell growth // inferred from electronic annotation /// 0030308 // negative regulation of cell growth // inferred from sequence or structural similarity /// 0030433 // ER-associated protein catabolic process // not recorded /// 0030433 // ER-associated protein catabolic process // inferred from electronic annotation /// 0031398 // positive regulation of protein ubiquitination // not recorded /// 0031398 // positive regulation of protein ubiquitination // inferred from electronic annotation /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0090084 // negative regulation of inclusion body assembly // not recorded /// 0090084 // negative regulation of inclusion body assembly // inferred from electronic annotation /// 0090086 // negative regulation of protein deubiquitination // not recorded /// 0090086 // negative regulation of protein deubiquitination // inferred from electronic annotation 0000502 // proteasome complex // not recorded /// 0000502 // proteasome complex // inferred from electronic annotation /// 0016234 // inclusion body // not recorded /// 0016234 // inclusion body // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // not recorded /// 0030544 // Hsp70 protein binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation /// 0031593 // polyubiquitin binding // not recorded /// 0031593 // polyubiquitin binding // inferred from electronic annotation /// 0070628 // proteasome binding // not recorded /// 0070628 // proteasome binding // inferred from electronic annotation 1399040_at AI178644 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI178644 /DB_XREF=gi:3729282 /DB_XREF=EST222325 /CLONE=RPLCT77 /FEA=EST /CNT=10 /TID=Rn.24584.1 /TIER=Stack /STK=9 /UG=Rn.24584 /UG_TITLE=ESTs AI178644 glucosidase beta 2 Gba2 298399 NM_001013091 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // inferred from electronic annotation /// 0006680 // glucosylceramide catabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008206 // bile acid metabolic process // not recorded /// 0008206 // bile acid metabolic process // inferred from sequence or structural similarity /// 0016142 // O-glycoside catabolic process // not recorded /// 0016142 // O-glycoside catabolic process // inferred from sequence or structural similarity 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded /// 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004348 // glucosylceramidase activity // inferred from electronic annotation /// 0008422 // beta-glucosidase activity // not recorded /// 0008422 // beta-glucosidase activity // inferred from sequence or structural similarity /// 0008422 // beta-glucosidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation 1399041_at AI070399 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI070399 /DB_XREF=gi:3396650 /DB_XREF=UI-R-Y0-lt-g-09-0-UI.s1 /CLONE=UI-R-Y0-lt-g-09-0-UI /FEA=EST /CNT=9 /TID=Rn.20653.1 /TIER=Stack /STK=9 /UG=Rn.20653 /UG_TITLE=ESTs AI070399 optic atrophy 3 (human) Opa3 308409 NM_001107486 0007601 // visual perception // not recorded 0005739 // mitochondrion // not recorded 1399042_at AI228455 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI228455 /DB_XREF=gi:3812342 /DB_XREF=EST225150 /CLONE=RBRCV08 /FEA=EST /CNT=9 /TID=Rn.24328.1 /TIER=Stack /STK=9 /UG=Rn.24328 /UG_TITLE=ESTs, Moderately similar to KIAA0943 protein (Homo sapiens) (H.sapiens) AI228455 ATG4 autophagy related 4 homolog B (S. cerevisiae) Atg4b 316640 NM_001025711 0000045 // autophagic vacuole assembly // not recorded /// 0006508 // proteolysis // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0006914 // autophagy // not recorded /// 0008152 // metabolic process // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0045732 // positive regulation of protein catabolic process // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // not recorded /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation 1399043_at AI175266 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI175266 /DB_XREF=gi:3725904 /DB_XREF=EST218803 /CLONE=RMUCG12 /FEA=EST /CNT=45 /TID=Rn.17868.1 /TIER=Stack /STK=8 /UG=Rn.17868 /UG_TITLE=ESTs, Weakly similar to CAZ3_RAT F-ACTIN CAPPING PROTEIN ALPHA-3 SUBUNIT (CAPZ ALPHA-3) (R.norvegicus) AI175266 capping protein (actin filament) muscle Z-line, alpha 2 Capza2 493810 NM_001009180 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0051693 // actin filament capping // inferred from electronic annotation 0008290 // F-actin capping protein complex // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0030863 // cortical cytoskeleton // inferred from electronic annotation /// 0030863 // cortical cytoskeleton // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1399044_at AA819804 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819804 /DB_XREF=gi:4228059 /DB_XREF=UI-R-A0-aq-g-02-0-UI.s1 /CLONE=UI-R-A0-aq-g-02-0-UI /FEA=EST /CNT=21 /TID=Rn.1772.1 /TIER=Stack /STK=8 /UG=Rn.1772 /UG_TITLE=ESTs, Highly similar to I48722 zinc finger protein - mouse (M.musculus) AA819804 zinc finger protein 91 Zfp91 246282 NM_001169120 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation 1399045_at AI236745 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236745 /DB_XREF=gi:3830251 /DB_XREF=EST233307 /CLONE=ROVDK08 /FEA=EST /CNT=18 /TID=Rn.7578.1 /TIER=Stack /STK=8 /UG=Rn.7578 /UG_TITLE=ESTs AI236745 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) Galnt1 79214 NM_024373 0006493 // protein O-linked glycosylation // not recorded /// 0006493 // protein O-linked glycosylation // traceable author statement /// 0006493 // protein O-linked glycosylation // inferred from electronic annotation /// 0018242 // protein O-linked glycosylation via serine // inferred from electronic annotation /// 0018242 // protein O-linked glycosylation via serine // not recorded /// 0018243 // protein O-linked glycosylation via threonine // inferred from electronic annotation /// 0018243 // protein O-linked glycosylation via threonine // not recorded 0005576 // extracellular region // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0032580 // Golgi cisterna membrane // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // not recorded 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from mutant phenotype /// 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // not recorded /// 0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0030145 // manganese ion binding // not recorded 1399046_at BE116507 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE116507 /DB_XREF=gi:8508612 /DB_XREF=UI-R-BS1-ayj-a-12-0-UI.s1 /CLONE=UI-R-BS1-ayj-a-12-0-UI /FEA=EST /CNT=20 /TID=Rn.2071.1 /TIER=Stack /STK=8 /UG=Rn.2071 /UG_TITLE=ESTs BE116507 1399047_at BF283001 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283001 /DB_XREF=gi:11214071 /DB_XREF=EST447592 /CLONE=RGIDW15 /FEA=EST /CNT=14 /TID=Rn.18445.1 /TIER=Stack /STK=8 /UG=Rn.18445 /UG_TITLE=ESTs, Weakly similar to RM02_YEAST 60S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL PRECURSOR (YML2) (YMR6) (S.cerevisiae) BF283001 mitochondrial ribosomal protein L27 Mrpl27 287635 NM_001105831 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1399048_at BI274121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274121 /DB_XREF=gi:14884745 /DB_XREF=UI-R-CW0-bwf-b-12-0-UI.s1 /CLONE=UI-R-CW0-bwf-b-12-0-UI /FEA=EST /CNT=14 /TID=Rn.12857.1 /TIER=Stack /STK=8 /UG=Rn.12857 /UG_TITLE=ESTs BI274121 coactivator-associated arginine methyltransferase 1 Carm1 363026 NM_001030041 /// NM_001034088 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0008380 // RNA splicing // inferred from electronic annotation /// 0009405 // pathogenesis // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016571 // histone methylation // not recorded /// 0030518 // steroid hormone receptor signaling pathway // not recorded /// 0034970 // histone H3-R2 methylation // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0051591 // response to cAMP // inferred from direct assay 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation 0003713 // transcription coactivator activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008276 // protein methyltransferase activity // not recorded /// 0008469 // histone-arginine N-methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1399049_at AI230073 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI230073 /DB_XREF=gi:3813960 /DB_XREF=EST226768 /CLONE=REMCQ61 /FEA=EST /CNT=13 /TID=Rn.8280.1 /TIER=Stack /STK=8 /UG=Rn.8280 /UG_TITLE=ESTs, Weakly similar to T33304 hypothetical protein R01B10.5 - Caenorhabditis elegans (C.elegans) AI230073 JNK1/MAPK8-associated membrane protein Jkamp 299127 NM_001106738 0030433 // ER-associated protein catabolic process // not recorded 0031625 // ubiquitin protein ligase binding // not recorded 1399050_at AI232106 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232106 /DB_XREF=gi:3815986 /DB_XREF=EST228794 /CLONE=RKIBW91 /FEA=EST /CNT=15 /TID=Rn.9047.1 /TIER=Stack /STK=8 /UG=Rn.9047 /UG_TITLE=ESTs AI232106 adenylosuccinate synthase Adss 289276 NM_001105975 0006164 // purine nucleotide biosynthetic process // inferred from electronic annotation /// 0006164 // purine nucleotide biosynthetic process // not recorded /// 0006167 // AMP biosynthetic process // not recorded /// 0009168 // purine ribonucleoside monophosphate biosynthetic process // not recorded 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004019 // adenylosuccinate synthase activity // inferred from electronic annotation /// 0004019 // adenylosuccinate synthase activity // not recorded /// 0005525 // GTP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1399051_at BE104409 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE104409 /DB_XREF=gi:8496509 /DB_XREF=UI-R-BX0-aro-e-10-0-UI.s1 /CLONE=UI-R-BX0-aro-e-10-0-UI /FEA=EST /CNT=12 /TID=Rn.9510.1 /TIER=Stack /STK=8 /UG=Rn.9510 /UG_TITLE=ESTs BE104409 protein associated with topoisomerase II homolog 1 (yeast) Patl1 361736 NM_001108520 0016853 // isomerase activity // inferred from electronic annotation 1399052_at AA957069 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA957069 /DB_XREF=gi:4239542 /DB_XREF=UI-R-E1-ge-c-10-0-UI.s1 /CLONE=UI-R-E1-ge-c-10-0-UI /FEA=EST /CNT=11 /TID=Rn.9177.1 /TIER=Stack /STK=8 /UG=Rn.9177 /UG_TITLE=ESTs, Weakly similar to T21344 hypothetical protein F25H2.1 - Caenorhabditis elegans (C.elegans) AA957069 toll interacting protein Tollip 361677 NM_001109668 0006954 // inflammatory response // inferred from electronic annotation /// 0007165 // signal transduction // not recorded /// 0016310 // phosphorylation // not recorded /// 0016310 // phosphorylation // inferred from sequence or structural similarity /// 0045087 // innate immune response // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0019900 // kinase binding // not recorded /// 0035325 // Toll-like receptor binding // not recorded 1399053_at BM391257 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM391257 /DB_XREF=gi:18191310 /DB_XREF=UI-R-DY0-ckq-m-04-0-UI.s1 /CLONE=UI-R-DY0-ckq-m-04-0-UI /FEA=EST /CNT=9 /TID=Rn.1096.1 /TIER=Stack /STK=8 /UG=Rn.1096 /UG_TITLE=ESTs BM391257 1399054_at BG375798 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG375798 /DB_XREF=gi:13300270 /DB_XREF=UI-R-CS0-btf-e-10-0-UI.s1 /CLONE=UI-R-CS0-btf-e-10-0-UI /FEA=EST /CNT=9 /TID=Rn.16915.1 /TIER=Stack /STK=8 /UG=Rn.16915 /UG_TITLE=ESTs BG375798 1399055_at BI275924 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275924 /DB_XREF=gi:14920336 /DB_XREF=UI-R-CX0-bxi-b-02-0-UI.s1 /CLONE=UI-R-CX0-bxi-b-02-0-UI /FEA=EST /CNT=9 /TID=Rn.17537.1 /TIER=Stack /STK=8 /UG=Rn.17537 /UG_TITLE=ESTs BI275924 bromodomain containing 7 Brd7 361374 NM_001108440 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded 0005634 // nucleus // not recorded 0005515 // protein binding // not recorded /// 0008134 // transcription factor binding // not recorded /// 0042393 // histone binding // not recorded 1399056_at AI716436 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI716436 /DB_XREF=gi:5033689 /DB_XREF=UI-R-Y0-ach-a-03-0-UI.s1 /CLONE=UI-R-Y0-ach-a-03-0-UI /FEA=EST /CNT=8 /TID=Rn.20063.1 /TIER=Stack /STK=8 /UG=Rn.20063 /UG_TITLE=ESTs, Weakly similar to 2118405G hexaprenyl pyrophosphate synthetase (Saccharomyces cerevisiae) (S.cerevisiae) AI716436 prenyl (decaprenyl) diphosphate synthase, subunit 2 Pdss2 365592 NM_001014249 0006744 // ubiquinone biosynthetic process // inferred from electronic annotation /// 0006744 // ubiquinone biosynthetic process // not recorded /// 0008299 // isoprenoid biosynthetic process // inferred from electronic annotation /// 0008299 // isoprenoid biosynthetic process // not recorded /// 0050878 // regulation of body fluid levels // not recorded /// 0051290 // protein heterotetramerization // not recorded 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded 0000010 // trans-hexaprenyltranstransferase activity // not recorded /// 0016740 // transferase activity // inferred from electronic annotation /// 0046982 // protein heterodimerization activity // not recorded /// 0050347 // trans-octaprenyltranstransferase activity // not recorded 1399057_at BE109080 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE109080 /DB_XREF=gi:8501185 /DB_XREF=UI-R-BS1-azc-g-03-0-UI.s1 /CLONE=UI-R-BS1-azc-g-03-0-UI /FEA=EST /CNT=69 /TID=Rn.3462.1 /TIER=Stack /STK=7 /UG=Rn.3462 /UG_TITLE=ESTs, Highly similar to testis expressed gene 189 (Mus musculus) (M.musculus) BE109080 mortality factor 4 like 1 Morf4l1 300891 NM_001011999 0000724 // double-strand break repair via homologous recombination // inferred from sequence or structural similarity /// 0006281 // DNA repair // inferred from electronic annotation /// 0006333 // chromatin assembly or disassembly // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016575 // histone deacetylation // inferred from sequence or structural similarity /// 0040008 // regulation of growth // inferred from electronic annotation /// 0043967 // histone H4 acetylation // inferred from sequence or structural similarity /// 0043968 // histone H2A acetylation // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // inferred from electronic annotation 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016580 // Sin3 complex // inferred from sequence or structural similarity /// 0035267 // NuA4 histone acetyltransferase complex // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0003682 // chromatin binding // inferred from electronic annotation /// 0031072 // heat shock protein binding // inferred from electronic annotation 1399058_at BI288800 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI288800 /DB_XREF=gi:14945729 /DB_XREF=UI-R-DK0-cdf-a-11-0-UI.s1 /CLONE=UI-R-DK0-cdf-a-11-0-UI /FEA=EST /CNT=16 /TID=Rn.4178.1 /TIER=Stack /STK=7 /UG=Rn.4178 /UG_TITLE=ESTs, Weakly similar to D2007.4.p (Caenorhabditis elegans) (C.elegans) BI288800 mitochondrial ribosomal protein L18 Mrpl18 292244 NM_001106205 0006412 // translation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005840 // ribosome // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from electronic annotation 1399059_at BI283868 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283868 /DB_XREF=gi:14936035 /DB_XREF=UI-R-CX0s-ccx-f-06-0-UI.s1 /CLONE=UI-R-CX0s-ccx-f-06-0-UI /FEA=EST /CNT=14 /TID=Rn.12929.1 /TIER=Stack /STK=7 /UG=Rn.12929 /UG_TITLE=ESTs BI283868 enhancer of zeste homolog 1 (Drosophila) Ezh1 303547 NM_001107051 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0035098 // ESC/E(Z) complex // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1399060_at BE113005 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE113005 /DB_XREF=gi:8505110 /DB_XREF=UI-R-BJ1-awf-c-10-0-UI.s1 /CLONE=UI-R-BJ1-awf-c-10-0-UI /FEA=EST /CNT=13 /TID=Rn.8013.1 /TIER=Stack /STK=7 /UG=Rn.8013 /UG_TITLE=ESTs BE113005 1399061_at H35275 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:H35275 /DB_XREF=gi:980692 /DB_XREF=EST109440 /CLONE=RPNAR70 /FEA=EST /CNT=13 /TID=Rn.11508.1 /TIER=Stack /STK=7 /UG=Rn.11508 /UG_TITLE=ESTs H35275 1399062_at BI301008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI301008 /DB_XREF=gi:14977288 /DB_XREF=UI-R-DK0-cer-a-04-0-UI.s2 /CLONE=UI-R-DK0-cer-a-04-0-UI /FEA=EST /CNT=12 /TID=Rn.3069.1 /TIER=Stack /STK=7 /UG=Rn.3069 /UG_TITLE=ESTs BI301008 mCG51409-like LOC100359861 100359861 XM_002725888 /// XM_002729013 1399063_at BE105565 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE105565 /DB_XREF=gi:8497667 /DB_XREF=UI-R-BX0-ash-c-10-0-UI.s1 /CLONE=UI-R-BX0-ash-c-10-0-UI /FEA=EST /CNT=11 /TID=Rn.37755.1 /TIER=Stack /STK=7 /UG=Rn.37755 /UG_TITLE=ESTs, Highly similar to T00076 hypothetical protein KIAA0462 (H.sapiens) BE105565 ubiquitin protein ligase E3 component n-recognin 4 Ubr4 313658 NM_001039026 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1399064_at AI009591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI009591 /DB_XREF=gi:4133067 /DB_XREF=EST204042 /CLONE=RLUBG03 /FEA=EST /CNT=11 /TID=Rn.13922.1 /TIER=Stack /STK=7 /UG=Rn.13922 /UG_TITLE=ESTs AI009591 1399065_at BM389543 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389543 /DB_XREF=gi:18189596 /DB_XREF=UI-R-CN1-cjn-f-12-0-UI.s1 /CLONE=UI-R-CN1-cjn-f-12-0-UI /FEA=EST /CNT=11 /TID=Rn.9544.1 /TIER=Stack /STK=7 /UG=Rn.9544 /UG_TITLE=ESTs BM389543 RNA binding protein with multiple splicing 2 Rbpms2 503214 NM_001173426 /// XM_001076681 /// XM_578738 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation 1399066_at AI236763 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236763 /DB_XREF=gi:4136240 /DB_XREF=EST233325 /CLONE=ROVDK26 /FEA=EST /CNT=12 /TID=Rn.12361.1 /TIER=Stack /STK=7 /UG=Rn.12361 /UG_TITLE=ESTs AI236763 TATA element modulatory factor 1 Tmf1 114206 NM_053671 0005515 // protein binding // not recorded 1399067_at AI229702 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI229702 /DB_XREF=gi:4135462 /DB_XREF=EST226397 /CLONE=REMCK78 /FEA=EST /CNT=11 /TID=Rn.3977.1 /TIER=Stack /STK=7 /UG=Rn.3977 /UG_TITLE=ESTs AI229702 1399068_at BM389499 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM389499 /DB_XREF=gi:18189552 /DB_XREF=UI-R-CN1-cjn-n-09-0-UI.s1 /CLONE=UI-R-CN1-cjn-n-09-0-UI /FEA=EST /CNT=9 /TID=Rn.2087.1 /TIER=Stack /STK=7 /UG=Rn.2087 /UG_TITLE=ESTs, Weakly similar to ELL MOUSE RNA POLYMERASE II ELONGATION FACTOR ELL (M.musculus) BM389499 occludin/ELL domain containing 1 Ocel1 290628 NM_001106065 1399069_at AI234008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI234008 /DB_XREF=gi:3817888 /DB_XREF=EST230696 /CLONE=RLUCU04 /FEA=EST /CNT=9 /TID=Rn.2821.1 /TIER=Stack /STK=7 /UG=Rn.2821 /UG_TITLE=ESTs AI234008 1399070_at AI180081 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI180081 /DB_XREF=gi:3730719 /DB_XREF=EST223817 /CLONE=RSPCP81 /FEA=EST /CNT=10 /TID=Rn.14057.1 /TIER=Stack /STK=7 /UG=Rn.14057 /UG_TITLE=ESTs AI180081 SET domain containing 5 Setd5 297514 NM_001106614 1399071_at BI281808 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281808 /DB_XREF=gi:14931929 /DB_XREF=UI-R-CU0s-cbs-g-06-0-UI.s1 /CLONE=UI-R-CU0s-cbs-g-06-0-UI /FEA=EST /CNT=8 /TID=Rn.11460.1 /TIER=Stack /STK=7 /UG=Rn.11460 /UG_TITLE=ESTs BI281808 1399072_at BI283002 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI283002 /DB_XREF=gi:14934326 /DB_XREF=UI-R-CW0s-ccf-h-02-0-UI.s1 /CLONE=UI-R-CW0s-ccf-h-02-0-UI /FEA=EST /CNT=8 /TID=Rn.18229.1 /TIER=Stack /STK=7 /UG=Rn.18229 /UG_TITLE=ESTs, Highly similar to fibroblast growth factor (acidic) intracellular binding protein; aFGF intracellular binding protein (Mus musculus) (M.musculus) BI283002 fibroblast growth factor (acidic) intracellular binding protein Fibp 282837 NM_172334 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005792 // microsome // not recorded /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0017134 // fibroblast growth factor binding // not recorded /// 0017134 // fibroblast growth factor binding // inferred from electronic annotation 1399073_at BI274378 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI274378 /DB_XREF=gi:14885245 /DB_XREF=UI-R-CW0-bwi-c-02-0-UI.s1 /CLONE=UI-R-CW0-bwi-c-02-0-UI /FEA=EST /CNT=8 /TID=Rn.9218.1 /TIER=Stack /STK=7 /UG=Rn.9218 /UG_TITLE=ESTs, Weakly similar to T19448 hypothetical protein C25D7.8 - Caenorhabditis elegans (C.elegans) BI274378 OTU domain, ubiquitin aldehyde binding 1 Otub1 293705 NM_001106332 0019538 // protein metabolic process // inferred from electronic annotation /// 0071108 // protein K48-linked deubiquitination // not recorded /// 0071108 // protein K48-linked deubiquitination // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation 0004843 // ubiquitin-specific protease activity // not recorded /// 0004843 // ubiquitin-specific protease activity // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0008242 // omega peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0019784 // NEDD8-specific protease activity // not recorded /// 0019784 // NEDD8-specific protease activity // inferred from sequence or structural similarity /// 0043130 // ubiquitin binding // not recorded /// 0043130 // ubiquitin binding // inferred from sequence or structural similarity 1399074_at BI279569 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI279569 /DB_XREF=gi:14927510 /DB_XREF=UI-R-DE0-cae-a-12-0-UI.s1 /CLONE=UI-R-DE0-cae-a-12-0-UI /FEA=EST /CNT=8 /TID=Rn.26368.1 /TIER=Stack /STK=7 /UG=Rn.26368 /UG_TITLE=ESTs, Moderately similar to A56519 CDC16 protein (H.sapiens) BI279569 cell division cycle 16 homolog (S. cerevisiae) Cdc16 290875 NM_001024744 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051301 // cell division // inferred from electronic annotation /// 0051436 // negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0051437 // positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle // not recorded /// 0070979 // protein K11-linked ubiquitination // inferred from electronic annotation /// 0070979 // protein K11-linked ubiquitination // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded /// 0005680 // anaphase-promoting complex // inferred from electronic annotation /// 0005680 // anaphase-promoting complex // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0005829 // cytosol // not recorded /// 0005876 // spindle microtubule // inferred from electronic annotation /// 0005876 // spindle microtubule // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1399075_at AI146037 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI146037 /DB_XREF=gi:3667836 /DB_XREF=UI-R-BT0-qg-b-12-0-UI.s1 /CLONE=UI-R-BT0-qg-b-12-0-UI /FEA=EST /CNT=8 /TID=Rn.24019.1 /TIER=Stack /STK=7 /UG=Rn.24019 /UG_TITLE=ESTs AI146037 mitogen activated protein kinase kinase kinase 7 Map3k7 313121 NM_001107920 0000165 // MAPKKK cascade // not recorded /// 0000165 // MAPKKK cascade // inferred from electronic annotation /// 0000186 // activation of MAPKK activity // inferred from direct assay /// 0001525 // angiogenesis // inferred from electronic annotation /// 0001525 // angiogenesis // not recorded /// 0001841 // neural tube formation // inferred from electronic annotation /// 0001841 // neural tube formation // not recorded /// 0002726 // positive regulation of T cell cytokine production // inferred from electronic annotation /// 0002726 // positive regulation of T cell cytokine production // not recorded /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0007165 // signal transduction // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling pathway // not recorded /// 0007250 // activation of NF-kappaB-inducing kinase activity // inferred from electronic annotation /// 0007250 // activation of NF-kappaB-inducing kinase activity // not recorded /// 0007252 // I-kappaB phosphorylation // not recorded /// 0007252 // I-kappaB phosphorylation // inferred from sequence or structural similarity /// 0007252 // I-kappaB phosphorylation // inferred from electronic annotation /// 0032743 // positive regulation of interleukin-2 production // inferred from electronic annotation /// 0032743 // positive regulation of interleukin-2 production // not recorded /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // inferred from electronic annotation /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043507 // positive regulation of JUN kinase activity // not recorded /// 0043507 // positive regulation of JUN kinase activity // inferred from sequence or structural similarity /// 0043507 // positive regulation of JUN kinase activity // inferred from electronic annotation /// 0046330 // positive regulation of JNK cascade // inferred from electronic annotation /// 0046330 // positive regulation of JNK cascade // not recorded 0005829 // cytosol // not recorded /// 0008385 // IkappaB kinase complex // inferred from electronic annotation /// 0008385 // IkappaB kinase complex // not recorded /// 0010008 // endosome membrane // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004672 // protein kinase activity // not recorded /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004708 // MAP kinase kinase activity // inferred from electronic annotation /// 0004708 // MAP kinase kinase activity // not recorded /// 0004709 // MAP kinase kinase kinase activity // inferred from direct assay /// 0004709 // MAP kinase kinase kinase activity // not recorded /// 0004709 // MAP kinase kinase kinase activity // inferred from sequence or structural similarity /// 0004709 // MAP kinase kinase kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1399076_at AI410340 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI410340 /DB_XREF=gi:4253844 /DB_XREF=EST238633 /CLONE=RKIDN42 /FEA=EST /CNT=7 /TID=Rn.12274.1 /TIER=Stack /STK=7 /UG=Rn.12274 /UG_TITLE=ESTs AI410340 UbiA prenyltransferase domain containing 1 Ubiad1 313706 NM_001107993 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0016020 // membrane // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation 0004659 // prenyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation 1399077_at AI411253 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411253 /DB_XREF=gi:4254757 /DB_XREF=EST239547 /CLONE=RKIEO11 /FEA=EST /CNT=7 /TID=Rn.9148.2 /TIER=Stack /STK=7 /UG=Rn.9148 /UG_TITLE=ESTs, Moderately similar to MTXN MOUSE METAXIN (M.musculus) AI411253 Metaxin 1 Mtx1 295241 NM_001100667 0006626 // protein targeting to mitochondrion // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1399078_at BG380479 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG380479 /DB_XREF=gi:13304951 /DB_XREF=UI-R-CT0-btx-g-04-0-UI.s1 /CLONE=UI-R-CT0-btx-g-04-0-UI /FEA=EST /CNT=7 /TID=Rn.15028.1 /TIER=Stack /STK=7 /UG=Rn.15028 /UG_TITLE=ESTs BG380479 mediator complex subunit 16 Med16 299607 NM_001106768 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0030518 // steroid hormone receptor signaling pathway // not recorded /// 0030521 // androgen receptor signaling pathway // not recorded 0016592 // mediator complex // not recorded 0003712 // transcription cofactor activity // not recorded /// 0004872 // receptor activity // not recorded /// 0016563 // transcription activator activity // not recorded /// 0030375 // thyroid hormone receptor coactivator activity // not recorded /// 0046966 // thyroid hormone receptor binding // not recorded 1399079_at AI101659 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI101659 /DB_XREF=gi:3706530 /DB_XREF=EST210948 /CLONE=RBRBT48 /FEA=EST /CNT=24 /TID=Rn.806.2 /TIER=Stack /STK=6 /UG=Rn.806 /UG_TITLE=ESTs, Moderately similar to UBPI_MOUSE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 18 (UBIQUITIN THIOLESTERASE 18) (UBIQUITIN-SPECIFIC PROCESSING PROTEASE 18) (DEUBIQUITINATING ENZYME 18) (43 KDA UBIQUITIN-SPECIFIC PROTEASE) (M.musculus) AI101659 1399080_at BI292036 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI292036 /DB_XREF=gi:14952147 /DB_XREF=UI-R-DN0-ciu-e-22-0-UI.s1 /CLONE=UI-R-DN0-ciu-e-22-0-UI /FEA=EST /CNT=12 /TID=Rn.40562.1 /TIER=Stack /STK=6 /UG=Rn.40562 /UG_TITLE=ESTs, Moderately similar to S14234 hypothetical protein - mouse (M.musculus) BI292036 hypothetical protein LOC688495 LOC688495 688495 NM_001135252 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1399081_at AI712911 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI712911 /DB_XREF=gi:5016711 /DB_XREF=UI-R-Y0-abb-a-02-0-UI.s1 /CLONE=UI-R-Y0-abb-a-02-0-UI /FEA=EST /CNT=16 /TID=Rn.25155.1 /TIER=Stack /STK=6 /UG=Rn.25155 /UG_TITLE=ESTs AI712911 1399082_at AI176581 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176581 /DB_XREF=gi:3727219 /DB_XREF=EST220169 /CLONE=ROVBU14 /FEA=EST /CNT=13 /TID=Rn.12122.1 /TIER=Stack /STK=6 /UG=Rn.12122 /UG_TITLE=ESTs AI176581 1399083_at BF283000 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF283000 /DB_XREF=gi:11214070 /DB_XREF=EST447591 /CLONE=RGIDW14 /FEA=EST /CNT=11 /TID=Rn.24646.1 /TIER=Stack /STK=6 /UG=Rn.24646 /UG_TITLE=ESTs, Weakly similar to alphabeta hydrolase fold (Caenorhabditis elegans) (C.elegans) BF283000 abhydrolase domain containing 11 Abhd11 360831 XM_001077591 /// XM_341104 0003824 // catalytic activity // inferred from electronic annotation 1399084_at BF405883 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF405883 /DB_XREF=gi:11393858 /DB_XREF=UI-R-CA1-bii-b-06-0-UI.s1 /CLONE=UI-R-CA1-bii-b-06-0-UI /FEA=EST /CNT=8 /TID=Rn.6832.1 /TIER=Stack /STK=6 /UG=Rn.6832 /UG_TITLE=ESTs, Weakly similar to DD15 MOUSE PUTATIVE PRE-MRNA SPLICING FACTOR RNA HELICASE (M.musculus) BF405883 DEAH (Asp-Glu-Ala-His) box polypeptide 16 Dhx16 294232 NM_212496 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1399085_at BM384770 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM384770 /DB_XREF=gi:18184823 /DB_XREF=UI-R-DY0-ckl-a-02-0-UI.s1 /CLONE=UI-R-DY0-ckl-a-02-0-UI /FEA=EST /CNT=7 /TID=Rn.25307.1 /TIER=Stack /STK=6 /UG=Rn.25307 /UG_TITLE=ESTs BM384770 1399086_at AI179640 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179640 /DB_XREF=gi:3730278 /DB_XREF=EST223364 /CLONE=RSPCJ89 /FEA=EST /CNT=7 /TID=Rn.12040.1 /TIER=Stack /STK=6 /UG=Rn.12040 /UG_TITLE=ESTs, Weakly similar to ZF37_RAT ZINC FINGER PROTEIN 37 (ZFP-37) (R.norvegicus) AI179640 zinc finger protein 105 Zfp105 316096 NM_001012128 0007283 // spermatogenesis // not recorded /// 0007283 // spermatogenesis // inferred from sequence or structural similarity /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0071300 // cellular response to retinoic acid // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005623 // cell // not recorded /// 0005623 // cell // inferred from sequence or structural similarity /// 0005623 // cell // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0048471 // perinuclear region of cytoplasm // inferred from sequence or structural similarity 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation 1399087_at AI179711 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI179711 /DB_XREF=gi:3730349 /DB_XREF=EST223437 /CLONE=RSPCK70 /FEA=EST /CNT=7 /TID=Rn.6810.1 /TIER=Stack /STK=6 /UG=Rn.6810 /UG_TITLE=ESTs AI179711 similar to hypothetical protein FLJ31528 RGD1307410 360673 XM_001074705 /// XM_001081796 /// XM_001081797 /// XM_340946 1399088_at AA819648 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA819648 /DB_XREF=gi:4227985 /DB_XREF=UI-R-A0-an-g-03-0-UI.s1 /CLONE=UI-R-A0-an-g-03-0-UI /FEA=EST /CNT=7 /TID=Rn.59536.1 /TIER=Stack /STK=6 /UG=Rn.59536 /UG_TITLE=ESTs AA819648 tousled-like kinase 2 Tlk2 303592 NM_001191652 /// XM_001067052 /// XM_001081561 /// XM_002724571 /// XM_221023 0001672 // regulation of chromatin assembly or disassembly // inferred from electronic annotation /// 0001672 // regulation of chromatin assembly or disassembly // not recorded /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // not recorded /// 0023034 // intracellular signaling pathway // inferred from electronic annotation /// 0023034 // intracellular signaling pathway // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded 1399089_at BF401591 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF401591 /DB_XREF=gi:11389566 /DB_XREF=UI-R-CA0-bgm-d-08-0-UI.s1 /CLONE=UI-R-CA0-bgm-d-08-0-UI /FEA=EST /CNT=6 /TID=Rn.20183.1 /TIER=Stack /STK=6 /UG=Rn.20183 /UG_TITLE=ESTs BF401591 solute carrier family 38, member 6 Slc38a6 299139 NM_001013099 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006814 // sodium ion transport // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1399090_at AA944459 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944459 /DB_XREF=gi:3104375 /DB_XREF=EST199958 /CLONE=REMAJ47 /FEA=EST /CNT=21 /TID=Rn.2064.3 /TIER=Stack /STK=17 /UG=Rn.2064 /UG_TITLE=Rattus norvegicus dynein light intermediate chain 1 mRNA, complete cds AA944459 1399091_at AI232101 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI232101 /DB_XREF=gi:3815981 /DB_XREF=EST228789 /CLONE=RKIBW84 /FEA=EST /CNT=34 /TID=Rn.6120.1 /TIER=Stack /STK=12 /UG=Rn.6120 /UG_TITLE=ESTs, Moderately similar to C54819 actin-capping protein beta chain, splice form 2 - mouse (M.musculus) AI232101 capping protein (actin filament) muscle Z-line, beta Capzb 298584 NM_001005903 0030030 // cell projection organization // not recorded /// 0030032 // lamellipodium assembly // not recorded /// 0030036 // actin cytoskeleton organization // inferred from electronic annotation /// 0051693 // actin filament capping // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0008290 // F-actin capping protein complex // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0030027 // lamellipodium // not recorded /// 0030863 // cortical cytoskeleton // not recorded /// 0071203 // WASH complex // not recorded /// 0071203 // WASH complex // inferred from sequence or structural similarity 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1399092_at BG378899 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG378899 /DB_XREF=gi:13303371 /DB_XREF=UI-R-CV1-bvu-b-09-0-UI.s1 /CLONE=UI-R-CV1-bvu-b-09-0-UI /FEA=EST /CNT=12 /TID=Rn.5911.1 /TIER=Stack /STK=11 /UG=Rn.5911 /UG_TITLE=ESTs BG378899 transmembrane protein 39b /// transmembrane protein 39b LOC100361208 /// Tmem39b 100361208 /// 362608 NM_001014192 /// XM_002729543 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1399093_at BM392394 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM392394 /DB_XREF=gi:18192447 /DB_XREF=UI-R-EB1-clf-g-12-0-UI.s1 /CLONE=UI-R-EB1-clf-g-12-0-UI /FEA=EST /CNT=12 /TID=Rn.25159.1 /TIER=Stack /STK=10 /UG=Rn.25159 /UG_TITLE=ESTs BM392394 1399094_at AA859919 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA859919 /DB_XREF=gi:4230455 /DB_XREF=UI-R-E0-cg-c-01-0-UI.s1 /CLONE=UI-R-E0-cg-c-01-0-UI /FEA=EST /CNT=15 /TID=Rn.2696.1 /TIER=Stack /STK=9 /UG=Rn.2696 /UG_TITLE=ESTs AA859919 churchill domain containing 1 Churc1 299154 NM_001106741 0007275 // multicellular organismal development // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from electronic annotation 1399095_at AI407918 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI407918 /DB_XREF=gi:4251422 /DB_XREF=EST236208 /CLONE=ROVEE57 /FEA=EST /CNT=34 /TID=Rn.1221.1 /TIER=Stack /STK=8 /UG=Rn.1221 /UG_TITLE=ESTs AI407918 SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae) Sumo1 301442 NM_001009672 0016481 // negative regulation of transcription // not recorded /// 0016925 // protein sumoylation // not recorded /// 0031334 // positive regulation of protein complex assembly // not recorded /// 0032436 // positive regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043392 // negative regulation of DNA binding // not recorded /// 0043433 // negative regulation of transcription factor activity // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045449 // regulation of transcription // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016605 // PML body // not recorded /// 0016607 // nuclear speck // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0045202 // synapse // inferred from direct assay 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0019789 // SUMO ligase activity // inferred from electronic annotation /// 0019789 // SUMO ligase activity // not recorded /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from sequence or structural similarity 1399096_at AA894279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA894279 /DB_XREF=gi:3021158 /DB_XREF=EST198082 /CLONE=RSPAU55 /FEA=EST /CNT=34 /TID=Rn.2375.2 /TIER=Stack /STK=7 /UG=Rn.2375 /LL=25230 /UG_GENE=Add3 /UG_TITLE=Adducin 3, gamma AA894279 adducin 3 (gamma) Add3 25230 NM_001164103 /// NM_031552 0042493 // response to drug // inferred from direct assay 0000794 // condensed nuclear chromosome // inferred from electronic annotation /// 0000794 // condensed nuclear chromosome // not recorded /// 0005625 // soluble fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from direct assay /// 0005856 // cytoskeleton // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005911 // cell-cell junction // inferred from electronic annotation /// 0005911 // cell-cell junction // not recorded /// 0005938 // cell cortex // inferred from electronic annotation /// 0005938 // cell cortex // not recorded /// 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003779 // actin binding // inferred from electronic annotation /// 0005080 // protein kinase C binding // inferred from direct assay /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005198 // structural molecule activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1399097_at AI236783 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI236783 /DB_XREF=gi:3830289 /DB_XREF=EST233345 /CLONE=ROVDK47 /FEA=EST /CNT=26 /TID=Rn.1078.1 /TIER=Stack /STK=7 /UG=Rn.1078 /UG_TITLE=ESTs AI236783 1399098_at AI103970 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI103970 /DB_XREF=gi:3704882 /DB_XREF=EST213259 /CLONE=RHEBV72 /FEA=EST /CNT=34 /TID=Rn.3850.1 /TIER=Stack /STK=6 /UG=Rn.3850 /UG_TITLE=ESTs, Moderately similar to C Chain C, Human Glyoxalase I Complexed With S-P- Nitrobenzyloxycarbonylglutathione (H.sapiens) AI103970 glyoxalase 1 Glo1 294320 NM_207594 0005975 // carbohydrate metabolic process // inferred from direct assay /// 0006749 // glutathione metabolic process // inferred from direct assay /// 0006916 // anti-apoptosis // not recorded /// 0006916 // anti-apoptosis // inferred from sequence or structural similarity /// 0008152 // metabolic process // not recorded /// 0009438 // methylglyoxal metabolic process // inferred from direct assay 0005625 // soluble fraction // inferred from direct assay 0004462 // lactoylglutathione lyase activity // inferred from direct assay /// 0004462 // lactoylglutathione lyase activity // not recorded /// 0004462 // lactoylglutathione lyase activity // inferred from sequence or structural similarity /// 0004462 // lactoylglutathione lyase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1399099_at BG381219 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG381219 /DB_XREF=gi:13305691 /DB_XREF=UI-R-CT0-buh-f-04-0-UI.s1 /CLONE=UI-R-CT0-buh-f-04-0-UI /FEA=EST /CNT=29 /TID=Rn.4170.1 /TIER=Stack /STK=6 /UG=Rn.4170 /UG_TITLE=ESTs, Moderately similar to E1B-55kDa-associated protein 5 (Homo sapiens) (H.sapiens) BG381219 heterogeneous nuclear ribonucleoprotein U-like 1 Hnrnpul1 361522 NM_001108477 0008380 // RNA splicing // not recorded 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1399100_at BF396192 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF396192 /DB_XREF=gi:11381204 /DB_XREF=UI-R-BS2-bdv-g-09-0-UI.s1 /CLONE=UI-R-BS2-bdv-g-09-0-UI /FEA=EST /CNT=13 /TID=Rn.17230.1 /TIER=Stack /STK=6 /UG=Rn.17230 /UG_TITLE=ESTs, Highly similar to CCT2_HUMAN CYCLIN T2 (H.sapiens) BF396192 cyclin T2 Ccnt2 304758 NM_001107171 0005634 // nucleus // not recorded /// 0005654 // nucleoplasm // not recorded 1399101_at AA849715 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849715 /DB_XREF=gi:4131755 /DB_XREF=EST192482 /CLONE=RMUAI06 /FEA=EST /CNT=9 /TID=Rn.4010.1 /TIER=ConsEnd /STK=5 /UG=Rn.4010 /UG_TITLE=ESTs AA849715 RNA binding motif protein 39 Rbm39 362251 NM_001013207 0006397 // mRNA processing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005813 // centrosome // inferred from electronic annotation /// 0005813 // centrosome // not recorded /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1399102_at BG377901 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG377901 /DB_XREF=gi:13302373 /DB_XREF=UI-R-CU0-bvg-e-09-0-UI.s1 /CLONE=UI-R-CU0-bvg-e-09-0-UI /FEA=EST /CNT=8 /TID=Rn.18664.1 /TIER=ConsEnd /STK=5 /UG=Rn.18664 /UG_TITLE=ESTs BG377901 solute carrier family 38, member 10 Slc38a10 303740 XM_001081798 /// XM_001081800 /// XM_002724582 /// XM_002727846 /// XM_002727847 /// XM_221195 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 1399103_at BF414041 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF414041 /DB_XREF=gi:11402030 /DB_XREF=UI-R-BJ2-bol-f-12-0-UI.s1 /CLONE=UI-R-BJ2-bol-f-12-0-UI /FEA=EST /CNT=8 /TID=Rn.2955.1 /TIER=ConsEnd /STK=5 /UG=Rn.2955 /UG_TITLE=ESTs BF414041 hypothetical protein LOC685634 LOC685634 685634 XM_001064606 /// XM_002726626 1399104_at BI287258 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI287258 /DB_XREF=gi:14942701 /DB_XREF=UI-R-CW0s-ccl-g-05-0-UI.s1 /CLONE=UI-R-CW0s-ccl-g-05-0-UI /FEA=EST /CNT=6 /TID=Rn.12815.1 /TIER=ConsEnd /STK=5 /UG=Rn.12815 /UG_TITLE=ESTs BI287258 CREB binding protein Crebbp 54244 NM_133381 0006355 // regulation of transcription, DNA-dependent // not recorded /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from direct assay /// 0016573 // histone acetylation // inferred from direct assay /// 0016573 // histone acetylation // not recorded /// 0016573 // histone acetylation // inferred from electronic annotation /// 0016573 // histone acetylation // inferred from sequence or structural similarity /// 0018076 // N-terminal peptidyl-lysine acetylation // not recorded /// 0018076 // N-terminal peptidyl-lysine acetylation // inferred from electronic annotation /// 0030718 // germ-line stem cell maintenance // not recorded /// 0030718 // germ-line stem cell maintenance // inferred from electronic annotation /// 0033261 // regulation of S phase // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from direct assay /// 0045449 // regulation of transcription // not recorded /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0045893 // positive regulation of transcription, DNA-dependent // not recorded /// 0045893 // positive regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0045941 // positive regulation of transcription // not recorded /// 0045941 // positive regulation of transcription // inferred from electronic annotation /// 0045941 // positive regulation of transcription // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from electronic annotation 0000123 // histone acetyltransferase complex // not recorded /// 0000123 // histone acetyltransferase complex // inferred from electronic annotation /// 0000940 // condensed chromosome outer kinetochore // not recorded /// 0000940 // condensed chromosome outer kinetochore // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred by curator /// 0005667 // transcription factor complex // inferred from direct assay /// 0005667 // transcription factor complex // not recorded /// 0005667 // transcription factor complex // inferred from electronic annotation /// 0016604 // nuclear body // not recorded /// 0016604 // nuclear body // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay 0002039 // p53 binding // not recorded /// 0002039 // p53 binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // not recorded /// 0003682 // chromatin binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from mutant phenotype /// 0003712 // transcription cofactor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0003713 // transcription coactivator activity // traceable author statement /// 0003713 // transcription coactivator activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from direct assay /// 0004402 // histone acetyltransferase activity // not recorded /// 0004402 // histone acetyltransferase activity // traceable author statement /// 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004402 // histone acetyltransferase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from physical interaction /// 0008134 // transcription factor binding // not recorded /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016407 // acetyltransferase activity // not recorded /// 0016407 // acetyltransferase activity // inferred from electronic annotation /// 0016407 // acetyltransferase activity // inferred from sequence or structural similarity /// 0016563 // transcription activator activity // inferred from mutant phenotype /// 0042975 // peroxisome proliferator activated receptor binding // inferred from direct assay /// 0046332 // SMAD binding // inferred from physical interaction /// 0051577 // MyoD binding // not recorded /// 0051577 // MyoD binding // inferred from electronic annotation /// 0051577 // MyoD binding // inferred from sequence or structural similarity 1399105_at AA926279 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA926279 /DB_XREF=gi:4237470 /DB_XREF=UI-R-A1-ev-c-12-0-UI.s1 /CLONE=UI-R-A1-ev-c-12-0-UI /FEA=EST /CNT=5 /TID=Rn.23088.1 /TIER=ConsEnd /STK=5 /UG=Rn.23088 /UG_TITLE=ESTs AA926279 bridging integrator 3 Bin3 361065 NM_001013186 0000917 // barrier septum formation // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0008104 // protein localization // inferred from electronic annotation /// 0008104 // protein localization // not recorded /// 0009826 // unidimensional cell growth // inferred from electronic annotation /// 0009826 // unidimensional cell growth // not recorded /// 0051301 // cell division // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1399106_at AI176121 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI176121 /DB_XREF=gi:3726759 /DB_XREF=EST219700 /CLONE=ROVBK93 /FEA=EST /CNT=10 /TID=Rn.14866.1 /TIER=ConsEnd /STK=4 /UG=Rn.14866 /UG_TITLE=ESTs AI176121 myeloma overexpressed 2 Myeov2 681389 NM_001109044 1399107_at BE112193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112193 /DB_XREF=gi:8504298 /DB_XREF=UI-R-BJ1-avg-g-09-0-UI.s1 /CLONE=UI-R-BJ1-avg-g-09-0-UI /FEA=EST /CNT=9 /TID=Rn.16772.1 /TIER=ConsEnd /STK=4 /UG=Rn.16772 /UG_TITLE=ESTs BE112193 similar to RIKEN cDNA 1810030N24 RGD1305158 297971 NM_001106644 1399108_at BM383630 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM383630 /DB_XREF=gi:18183683 /DB_XREF=UI-R-DM1-cka-h-06-0-UI.s1 /CLONE=UI-R-DM1-cka-h-06-0-UI /FEA=EST /CNT=7 /TID=Rn.24884.1 /TIER=ConsEnd /STK=4 /UG=Rn.24884 /UG_TITLE=ESTs BM383630 DIS3 mitotic control homolog (S. cerevisiae)-like Dis3l 363077 NM_001008380 0003723 // RNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0004540 // ribonuclease activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1399109_at BI281673 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI281673 /DB_XREF=gi:14931647 /DB_XREF=UI-R-CT0s-cav-b-07-0-UI.s1 /CLONE=UI-R-CT0s-cav-b-07-0-UI /FEA=EST /CNT=6 /TID=Rn.7769.1 /TIER=ConsEnd /STK=4 /UG=Rn.7769 /UG_TITLE=ESTs BI281673 1399110_at AW921218 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW921218 /DB_XREF=gi:8087040 /DB_XREF=EST352522 /CLONE=RGIHP73 /FEA=EST /CNT=6 /TID=Rn.17135.1 /TIER=ConsEnd /STK=4 /UG=Rn.17135 /UG_TITLE=ESTs AW921218 zinc finger and BTB domain containing 22 Zbtb22 309630 NM_001009172 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1399111_at AI102191 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI102191 /DB_XREF=gi:4134066 /DB_XREF=EST211480 /CLONE=RBRCA38 /FEA=EST /CNT=5 /TID=Rn.25517.1 /TIER=ConsEnd /STK=4 /UG=Rn.25517 /UG_TITLE=ESTs AI102191 cytochrome b-561 domain containing 2 Cyb561d2 363137 NM_001007753 0006810 // transport // inferred from electronic annotation /// 0022900 // electron transport chain // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0046872 // metal ion binding // inferred from electronic annotation 1399112_at AI599185 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI599185 /DB_XREF=gi:4608233 /DB_XREF=EST250888 /CLONE=REMET53 /FEA=EST /CNT=4 /TID=Rn.7122.1 /TIER=ConsEnd /STK=4 /UG=Rn.7122 /UG_TITLE=ESTs, Highly similar to SKIW_HUMAN HELICASE SKI2W (H.sapiens) AI599185 superkiller viralicidic activity 2-like (S. cerevisiae ) Skiv2l 294260 NM_213559 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004386 // helicase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation 1399113_at AI111683 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111683 /DB_XREF=gi:3511632 /DB_XREF=UI-R-Y0-mk-h-10-0-UI.s1 /CLONE=UI-R-Y0-mk-h-10-0-UI /FEA=EST /CNT=4 /TID=Rn.18126.1 /TIER=ConsEnd /STK=4 /UG=Rn.18126 /UG_TITLE=ESTs AI111683 1399114_at AA996974 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996974 /DB_XREF=gi:4280738 /DB_XREF=UI-R-C0-hk-g-02-0-UI.s1 /CLONE=UI-R-C0-hk-g-02-0-UI /FEA=EST /CNT=10 /TID=Rn.12475.1 /TIER=ConsEnd /STK=3 /UG=Rn.12475 /UG_TITLE=ESTs, Highly similar to 1802387B transcription factor IIE:SUBUNIT=small 34kD (H.sapiens) AA996974 general transcription factor IIE, polypeptide 2, beta Gtf2e2 306516 NM_001107318 0006367 // transcription initiation from RNA polymerase II promoter // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // not recorded /// 0006368 // RNA elongation from RNA polymerase II promoter // not recorded 0005654 // nucleoplasm // not recorded /// 0005673 // transcription factor TFIIE complex // inferred from electronic annotation 0003702 // RNA polymerase II transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1399115_at AI411999 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI411999 /DB_XREF=gi:4255503 /DB_XREF=EST240293 /CLONE=RKIEJ35 /FEA=EST /CNT=11 /TID=Rn.7866.1 /TIER=ConsEnd /STK=3 /UG=Rn.7866 /UG_TITLE=ESTs AI411999 similar to Cysteine protease ATG4A (Autophagy-related protein 4 homolog A) (Autophagin-2) (Autophagy-related cysteine endopeptidase 2) (AUT-like 2 cysteine endopeptidase) LOC678769 678769 NM_001126298 0006810 // transport // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation 1399116_at AI171781 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI171781 /DB_XREF=gi:4134660 /DB_XREF=EST217763 /CLONE=RMUBQ63 /FEA=EST /CNT=7 /TID=Rn.18604.1 /TIER=ConsEnd /STK=3 /UG=Rn.18604 /UG_TITLE=ESTs AI171781 LUC7-like 2 (S. cerevisiae) Luc7l2 312251 NM_001107853 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded 1399117_at BF546356 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF546356 /DB_XREF=gi:11637463 /DB_XREF=UI-R-C1-kx-b-02-0-UI.r1 /CLONE=UI-R-C1-kx-b-02-0-UI /FEA=EST /CNT=7 /TID=Rn.19548.1 /TIER=ConsEnd /STK=3 /UG=Rn.19548 /UG_TITLE=ESTs BF546356 similar to RIKEN cDNA 1110059G10 RGD1311745 301079 NM_001008329 1399118_at AI168933 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI168933 /DB_XREF=gi:3705241 /DB_XREF=EST214759 /CLONE=RKIBK84 /FEA=EST /CNT=4 /TID=Rn.11440.1 /TIER=ConsEnd /STK=3 /UG=Rn.11440 /UG_TITLE=ESTs AI168933 male-specific lethal 1 homolog (Drosophila) Msl1 303514 NM_001107048 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded 1399119_at BI282030 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI282030 /DB_XREF=gi:14932375 /DB_XREF=UI-R-CU0s-cbv-f-04-0-UI.s1 /CLONE=UI-R-CU0s-cbv-f-04-0-UI /FEA=EST /CNT=3 /TID=Rn.20363.1 /TIER=ConsEnd /STK=3 /UG=Rn.20363 /UG_TITLE=ESTs BI282030 zinc finger protein 292 Znf292 50552 NM_001008879 0005622 // intracellular // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008134 // transcription factor binding // non-traceable author statement /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016563 // transcription activator activity // inferred from direct assay 1399120_at BF407592 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF407592 /DB_XREF=gi:11395572 /DB_XREF=UI-R-BJ2-bqu-b-10-0-UI.s1 /CLONE=UI-R-BJ2-bqu-b-10-0-UI /FEA=EST /CNT=3 /TID=Rn.21018.1 /TIER=ConsEnd /STK=3 /UG=Rn.21018 /UG_TITLE=ESTs, Weakly similar to T20173 hypothetical protein C53A5.2 - Caenorhabditis elegans (C.elegans) BF407592 TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae) Trmt5 362754 NM_001108713 1399121_at BE111600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE111600 /DB_XREF=gi:8503705 /DB_XREF=UI-R-BJ1-avc-f-09-0-UI.s1 /CLONE=UI-R-BJ1-avc-f-09-0-UI /FEA=EST /CNT=16 /TID=Rn.13353.1 /TIER=ConsEnd /STK=2 /UG=Rn.13353 /UG_TITLE=ESTs BE111600 1399122_at BI278603 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278603 /DB_XREF=gi:14925613 /DB_XREF=UI-R-CW0-bxn-f-07-0-UI.s1 /CLONE=UI-R-CW0-bxn-f-07-0-UI /FEA=EST /CNT=7 /TID=Rn.8410.1 /TIER=ConsEnd /STK=2 /UG=Rn.8410 /UG_TITLE=ESTs BI278603 1399123_at BI302415 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI302415 /DB_XREF=gi:14978695 /DB_XREF=UI-R-DM0-cir-a-07-0-UI.s1 /CLONE=UI-R-DM0-cir-a-07-0-UI /FEA=EST /CNT=6 /TID=Rn.8336.1 /TIER=ConsEnd /STK=1 /UG=Rn.8336 /UG_TITLE=ESTs, Highly similar to T30176 EGF repeat transmembrane protein - mouse (M.musculus) BI302415 integrator complex subunit 6 Ints6 361057 NM_001047904 0016180 // snRNA processing // not recorded 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0015629 // actin cytoskeleton // not recorded /// 0032039 // integrator complex // not recorded 0005515 // protein binding // not recorded 1399124_at AI598517 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI598517 /DB_XREF=gi:4607551 /DB_XREF=EST250206 /CLONE=REMDR72 /FEA=EST /CNT=5 /TID=Rn.48942.1 /TIER=ConsEnd /STK=1 /UG=Rn.48942 /UG_TITLE=ESTs, Moderately similar to S12207 hypothetical protein (M.musculus) AI598517 similar to KIAA0090 protein RGD1310427 362643 NM_001108690 0005515 // protein binding // not recorded 1399125_at BI275516 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI275516 /DB_XREF=gi:14919503 /DB_XREF=UI-R-CX0-bwy-b-10-0-UI.s1 /CLONE=UI-R-CX0-bwy-b-10-0-UI /FEA=EST /CNT=4 /TID=Rn.20288.1 /TIER=ConsEnd /STK=1 /UG=Rn.20288 /UG_TITLE=ESTs, Moderately similar to INPP MOUSE INOSITOL POLYPHOSPHATE 1-PHOSPHATASE (M.musculus) BI275516 inositol polyphosphate-1-phosphatase Inpp1 316376 NM_001012131 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation 1399126_at AA964114 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964114 /DB_XREF=gi:4278990 /DB_XREF=UI-R-C0-gt-g-05-0-UI.s1 /CLONE=UI-R-C0-gt-g-05-0-UI /FEA=EST /CNT=4 /TID=Rn.54651.1 /TIER=ConsEnd /STK=1 /UG=Rn.54651 /UG_TITLE=ESTs AA964114 kinesin light chain 1 Klc1 171041 NM_001081972 /// NM_001081973 /// NM_001081974 0008088 // axon cargo transport // not recorded 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0005871 // kinesin complex // inferred from direct assay /// 0005871 // kinesin complex // inferred from electronic annotation /// 0005871 // kinesin complex // not recorded /// 0005874 // microtubule // inferred from electronic annotation /// 0030424 // axon // not recorded /// 0031410 // cytoplasmic vesicle // not recorded /// 0035253 // ciliary rootlet // not recorded /// 0043005 // neuron projection // not recorded /// 0043227 // membrane-bounded organelle // not recorded 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded 1399127_at AA964600 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA964600 /DB_XREF=gi:4279474 /DB_XREF=UI-R-C0-gv-b-07-0-UI.s1 /CLONE=UI-R-C0-gv-b-07-0-UI /FEA=EST /CNT=4 /TID=Rn.7393.1 /TIER=ConsEnd /STK=1 /UG=Rn.7393 /UG_TITLE=ESTs AA964600 LOC361485 RGD1309374 361485 XM_001055914 /// XM_002728660 1399128_at BF285820 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF285820 /DB_XREF=gi:11216890 /DB_XREF=EST450411 /CLONE=RGIFK39 /FEA=EST /CNT=3 /TID=Rn.65147.1 /TIER=ConsEnd /STK=1 /UG=Rn.65147 /UG_TITLE=ESTs, Moderately similar to F46F11.4.p (Caenorhabditis elegans) (C.elegans) BF285820 ubiquitin-like 5 Ubl5 500954 NM_001048243 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded 1399129_at AA924317 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA924317 /DB_XREF=gi:4234457 /DB_XREF=UI-R-A1-dy-h-02-0-UI.s1 /CLONE=UI-R-A1-dy-h-02-0-UI /FEA=EST /CNT=3 /TID=Rn.8177.1 /TIER=ConsEnd /STK=1 /UG=Rn.8177 /UG_TITLE=ESTs, Weakly similar to B0412.3.p (Caenorhabditis elegans) (C.elegans) AA924317 similar to hypothetical protein RGD1309765 290746 NM_001169115 1399130_at AW918690 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW918690 /DB_XREF=gi:8084472 /DB_XREF=EST349994 /CLONE=RGIEW57 /FEA=EST /CNT=11 /TID=Rn.20423.1 /TIER=ConsEnd /STK=0 /UG=Rn.20423 /UG_TITLE=ESTs AW918690 phosphatidylinositol glycan anchor biosynthesis, class Y Pigy 502782 NM_001024370 0006506 // GPI anchor biosynthetic process // inferred from sequence or structural similarity /// 0006506 // GPI anchor biosynthetic process // inferred from electronic annotation /// 0009893 // positive regulation of metabolic process // inferred from sequence or structural similarity /// 0009893 // positive regulation of metabolic process // inferred from electronic annotation 0000506 // glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex // inferred from sequence or structural similarity /// 0000506 // glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation 1399131_at AI703580 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI703580 /DB_XREF=gi:4991480 /DB_XREF=UI-R-AB1-yr-a-05-0-UI.s1 /CLONE=UI-R-AB1-yr-a-05-0-UI /FEA=EST /CNT=9 /TID=Rn.13000.1 /TIER=ConsEnd /STK=0 /UG=Rn.13000 /UG_TITLE=ESTs, Highly similar to ribosomal protein, mitochondrial, S22 (Mus musculus) (M.musculus) AI703580 similar to ribosomal protein, mitochondrial, S22 LOC683519 683519 NM_001077530 0005840 // ribosome // inferred from electronic annotation 1399132_at BI285751 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI285751 /DB_XREF=gi:14939717 /DB_XREF=UI-R-CU0s-cbp-e-06-0-UI.s1 /CLONE=UI-R-CU0s-cbp-e-06-0-UI /FEA=EST /CNT=9 /TID=Rn.15199.2 /TIER=ConsEnd /STK=0 /UG=Rn.15199 /UG_TITLE=ESTs, Weakly similar to vasopressin-activated calcium-mobilizing receptor protein (Rattus norvegicus) (R.norvegicus) BI285751 cullin 3 Cul3 301555 NM_001106923 0000090 // mitotic anaphase // not recorded /// 0000902 // cell morphogenesis // inferred from electronic annotation /// 0000902 // cell morphogenesis // not recorded /// 0000910 // cytokinesis // not recorded /// 0001701 // in utero embryonic development // inferred from electronic annotation /// 0001701 // in utero embryonic development // not recorded /// 0001831 // trophectodermal cellular morphogenesis // inferred from electronic annotation /// 0001831 // trophectodermal cellular morphogenesis // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0007369 // gastrulation // inferred from electronic annotation /// 0007369 // gastrulation // not recorded /// 0008054 // cyclin catabolic process // inferred from electronic annotation /// 0008054 // cyclin catabolic process // not recorded /// 0016477 // cell migration // not recorded /// 0016567 // protein ubiquitination // not recorded /// 0035024 // negative regulation of Rho protein signal transduction // not recorded /// 0043149 // stress fiber assembly // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0051322 // anaphase // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005827 // polar microtubule // not recorded /// 0031461 // cullin-RING ubiquitin ligase complex // inferred from electronic annotation /// 0031463 // Cul3-RING ubiquitin ligase complex // not recorded 0004842 // ubiquitin-protein ligase activity // not recorded /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0030332 // cyclin binding // inferred from electronic annotation /// 0030332 // cyclin binding // not recorded /// 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation 1399133_at AW520767 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW520767 /DB_XREF=gi:7163145 /DB_XREF=UI-R-BJ0p-agh-c-07-0-UI.s1 /CLONE=UI-R-BJ0p-agh-c-07-0-UI /FEA=EST /CNT=7 /TID=Rn.20218.1 /TIER=ConsEnd /STK=0 /UG=Rn.20218 /UG_TITLE=ESTs, Weakly similar to FBX7_HUMAN F-box only protein 7 (H.sapiens) AW520767 F-box protein 7 Fbxo7 366854 NM_001012222 0031647 // regulation of protein stability // inferred from electronic annotation /// 0031647 // regulation of protein stability // not recorded 0043234 // protein complex // inferred from electronic annotation /// 0043234 // protein complex // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1399134_at AW144008 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144008 /DB_XREF=gi:6163907 /DB_XREF=EST294304 /CLONE=RGICF26 /FEA=EST /CNT=7 /TID=Rn.12048.1 /TIER=ConsEnd /STK=0 /UG=Rn.12048 /UG_TITLE=ESTs, Moderately similar to T08766 hypothetical protein DKFZp586D211.1 (H.sapiens) AW144008 protection of telomeres 1A Pot1a 500054 NM_001024322 0000723 // telomere maintenance // inferred from electronic annotation /// 0007004 // telomere maintenance via telomerase // not recorded /// 0007004 // telomere maintenance via telomerase // inferred from electronic annotation /// 0016233 // telomere capping // inferred from electronic annotation /// 0016233 // telomere capping // not recorded /// 0032203 // telomere formation via telomerase // inferred from electronic annotation /// 0032203 // telomere formation via telomerase // not recorded /// 0032211 // negative regulation of telomere maintenance via telomerase // inferred from electronic annotation /// 0032211 // negative regulation of telomere maintenance via telomerase // not recorded /// 0032212 // positive regulation of telomere maintenance via telomerase // inferred from electronic annotation /// 0032212 // positive regulation of telomere maintenance via telomerase // not recorded /// 0032508 // DNA duplex unwinding // inferred from electronic annotation /// 0032508 // DNA duplex unwinding // not recorded /// 0051096 // positive regulation of helicase activity // inferred from electronic annotation /// 0051096 // positive regulation of helicase activity // not recorded /// 0051276 // chromosome organization // not recorded /// 0051973 // positive regulation of telomerase activity // inferred from electronic annotation /// 0051973 // positive regulation of telomerase activity // not recorded /// 0051974 // negative regulation of telomerase activity // inferred from electronic annotation /// 0051974 // negative regulation of telomerase activity // not recorded /// 0055114 // oxidation reduction // inferred from electronic annotation /// 0060383 // positive regulation of DNA strand elongation // inferred from electronic annotation /// 0060383 // positive regulation of DNA strand elongation // not recorded 0000781 // chromosome, telomeric region // not recorded /// 0000781 // chromosome, telomeric region // inferred from electronic annotation /// 0000783 // nuclear telomere cap complex // inferred from electronic annotation /// 0000783 // nuclear telomere cap complex // not recorded /// 0000784 // nuclear chromosome, telomeric region // inferred from electronic annotation /// 0005576 // extracellular region // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0010521 // telomerase inhibitor activity // inferred from electronic annotation /// 0010521 // telomerase inhibitor activity // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0017151 // DEAD/H-box RNA helicase binding // inferred from electronic annotation /// 0017151 // DEAD/H-box RNA helicase binding // not recorded /// 0043047 // single-stranded telomeric DNA binding // inferred from electronic annotation /// 0043047 // single-stranded telomeric DNA binding // not recorded 1399135_at BI290646 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI290646 /DB_XREF=gi:14949401 /DB_XREF=UI-R-DK0-cfx-f-06-0-UI.s1 /CLONE=UI-R-DK0-cfx-f-06-0-UI /FEA=EST /CNT=8 /TID=Rn.16040.1 /TIER=ConsEnd /STK=0 /UG=Rn.16040 /UG_TITLE=ESTs, Weakly similar to A55346 phosphoprotein phosphatase (R.norvegicus) BI290646 RNA polymerase II associated protein 3 Rpap3 300189 NM_001004243 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity 0005488 // binding // inferred from electronic annotation 1399136_at BE103179 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE103179 /DB_XREF=gi:8495243 /DB_XREF=UI-R-BT1-aqx-a-12-0-UI.s1 /CLONE=UI-R-BT1-aqx-a-12-0-UI /FEA=EST /CNT=7 /TID=Rn.14675.1 /TIER=ConsEnd /STK=0 /UG=Rn.14675 /UG_TITLE=ESTs BE103179 LEM domain containing 2 Lemd2 361807 NM_001039032 0005639 // integral to nuclear inner membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // not recorded 1399137_at AW527547 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW527547 /DB_XREF=gi:7169961 /DB_XREF=UI-R-BO1-ajv-e-07-0-UI.s1 /CLONE=UI-R-BO1-ajv-e-07-0-UI /FEA=EST /CNT=6 /TID=Rn.6799.1 /TIER=ConsEnd /STK=0 /UG=Rn.6799 /UG_TITLE=ESTs AW527547 methionyl aminopeptidase 1 Metap1 295500 NM_001106476 0006508 // proteolysis // inferred from electronic annotation /// 0009987 // cellular process // inferred from electronic annotation 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008235 // metalloexopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1399138_at BG672805 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG672805 /DB_XREF=gi:13894904 /DB_XREF=DRN02B03 /CLONE=DRN02B03 /FEA=EST /CNT=6 /TID=Rn.16012.1 /TIER=ConsEnd /STK=0 /UG=Rn.16012 /UG_TITLE=ESTs BG672805 DDB1 and CUL4 associated factor 8 Dcaf8 364050 NM_001014231 0080008 // CUL4 RING ubiquitin ligase complex // not recorded /// 0080008 // CUL4 RING ubiquitin ligase complex // inferred from sequence or structural similarity 0005515 // protein binding // not recorded 1399139_at BF551251 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF551251 /DB_XREF=gi:11660981 /DB_XREF=UI-R-C0-ig-b-04-0-UI.r1 /CLONE=UI-R-C0-ig-b-04-0-UI /FEA=EST /CNT=6 /TID=Rn.12891.1 /TIER=ConsEnd /STK=0 /UG=Rn.12891 /UG_TITLE=ESTs BF551251 similar to hypothetical protein FLJ11305 RGD1307041 361182 NM_001169144 1399140_at AA965202 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA965202 /DB_XREF=gi:4280076 /DB_XREF=UI-R-C0-hc-d-09-0-UI.s1 /CLONE=UI-R-C0-hc-d-09-0-UI /FEA=EST /CNT=6 /TID=Rn.12039.1 /TIER=ConsEnd /STK=0 /UG=Rn.12039 /UG_TITLE=ESTs, Highly similar to 2009427A guanine nucleotide-releasing protein (H.sapiens) AA965202 1399141_at BF404428 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF404428 /DB_XREF=gi:11392403 /DB_XREF=UI-R-CA1-bif-b-10-0-UI.s1 /CLONE=UI-R-CA1-bif-b-10-0-UI /FEA=EST /CNT=5 /TID=Rn.23593.1 /TIER=ConsEnd /STK=0 /UG=Rn.23593 /UG_TITLE=ESTs, Weakly similar to CLK3 RAT PROTEIN KINASE CLK3 (R.norvegicus) BF404428 CDC like kinase 4 Clk4 287269 NM_001013041 0006468 // protein phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from electronic annotation /// 0046777 // protein autophosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation 1399142_at BF398045 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF398045 /DB_XREF=gi:11383030 /DB_XREF=UI-R-BS2-beg-f-08-0-UI.s1 /CLONE=UI-R-BS2-beg-f-08-0-UI /FEA=EST /CNT=5 /TID=Rn.8230.1 /TIER=ConsEnd /STK=0 /UG=Rn.8230 /UG_TITLE=ESTs BF398045 1399143_at BI294702 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI294702 /DB_XREF=gi:14957413 /DB_XREF=UI-R-DK0-ceb-b-01-0-UI.s1 /CLONE=UI-R-DK0-ceb-b-01-0-UI /FEA=EST /CNT=5 /TID=Rn.7918.1 /TIER=ConsEnd /STK=0 /UG=Rn.7918 /UG_TITLE=ESTs BI294702 ubiquitin-conjugating enzyme E2N (UBC13 homolog, yeast) Ube2n 116725 NM_053928 0000724 // double-strand break repair via homologous recombination // not recorded /// 0000729 // DNA double-strand break processing // not recorded /// 0006281 // DNA repair // inferred from electronic annotation /// 0006301 // postreplication repair // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0006511 // ubiquitin-dependent protein catabolic process // traceable author statement /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded /// 0016567 // protein ubiquitination // traceable author statement /// 0016574 // histone ubiquitination // not recorded /// 0031058 // positive regulation of histone modification // not recorded /// 0033182 // regulation of histone ubiquitination // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade // not recorded /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0045739 // positive regulation of DNA repair // not recorded /// 0050852 // T cell receptor signaling pathway // not recorded /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0051443 // positive regulation of ubiquitin-protein ligase activity // not recorded /// 0070534 // protein K63-linked ubiquitination // not recorded /// 0070534 // protein K63-linked ubiquitination // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0031372 // UBC13-MMS2 complex // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from mutant phenotype /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation /// 0043130 // ubiquitin binding // not recorded 1399144_at BG670238 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BG670238 /DB_XREF=gi:13892337 /DB_XREF=DRNACA12 /CLONE=DRNACA12 /FEA=EST /CNT=4 /TID=Rn.3074.1 /TIER=ConsEnd /STK=0 /UG=Rn.3074 /UG_TITLE=ESTs BG670238 signal recognition particle 72 Srp72 498351 NM_001170601 /// XM_001066751 /// XM_001074215 0006614 // SRP-dependent cotranslational protein targeting to membrane // inferred from electronic annotation /// 0042493 // response to drug // not recorded 0005786 // signal recognition particle, endoplasmic reticulum targeting // not recorded /// 0048500 // signal recognition particle // inferred from electronic annotation 0005047 // signal recognition particle binding // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0008312 // 7S RNA binding // inferred from electronic annotation 1399145_at BF410891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF410891 /DB_XREF=gi:11398866 /DB_XREF=UI-R-CN0-bmf-c-07-0-UI.s1 /CLONE=UI-R-CN0-bmf-c-07-0-UI /FEA=EST /CNT=4 /TID=Rn.15247.1 /TIER=ConsEnd /STK=0 /UG=Rn.15247 /UG_TITLE=ESTs BF410891 G protein-coupled receptor 107 Gpr107 311857 NM_001107828 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation 1399146_at AI576776 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI576776 /DB_XREF=gi:4561152 /DB_XREF=UI-R-Y0-vl-e-11-0-UI.s1 /CLONE=UI-R-Y0-vl-e-11-0-UI /FEA=EST /CNT=4 /TID=Rn.19644.1 /TIER=ConsEnd /STK=3 /UG=Rn.19644 /UG_TITLE=ESTs AI576776 dolichol kinase Dolk 311847 NM_001107826 0043048 // dolichyl monophosphate biosynthetic process // not recorded 0005624 // membrane fraction // not recorded /// 0016021 // integral to membrane // inferred from electronic annotation /// 0030176 // integral to endoplasmic reticulum membrane // not recorded 0004168 // dolichol kinase activity // not recorded 1399147_at AI111975 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI111975 /DB_XREF=gi:3511924 /DB_XREF=UI-R-Y0-mo-e-09-0-UI.s1 /CLONE=UI-R-Y0-mo-e-09-0-UI /FEA=EST /CNT=2 /TID=Rn.23595.1 /TIER=ConsEnd /STK=2 /UG=Rn.23595 /UG_TITLE=ESTs AI111975 1399148_s_at AI013567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013567 /DB_XREF=gi:3227623 /DB_XREF=EST208242 /CLONE=RSPBO42 /FEA=EST /CNT=2 /TID=Rn.18021.1 /TIER=ConsEnd /STK=2 /UG=Rn.18021 /UG_TITLE=ESTs AI013567 glycosyltransferase 25 domain containing 1 Glt25d1 290637 NM_001106067 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation 1399149_x_at AI013567 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI013567 /DB_XREF=gi:3227623 /DB_XREF=EST208242 /CLONE=RSPBO42 /FEA=EST /CNT=2 /TID=Rn.18021.1 /TIER=ConsEnd /STK=2 /UG=Rn.18021 /UG_TITLE=ESTs AI013567 glycosyltransferase 25 domain containing 1 Glt25d1 290637 NM_001106067 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation 0016740 // transferase activity // inferred from electronic annotation 1399150_at AW144400 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AW144400 /DB_XREF=gi:6164299 /DB_XREF=EST294696 /CLONE=RGICR68 /FEA=EST /CNT=2 /TID=Rn.25194.1 /TIER=ConsEnd /STK=1 /UG=Rn.25194 /UG_TITLE=ESTs AW144400 family with sequence similarity 116, member A Fam116a 306229 NM_001134467 1399151_at AI029110 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AI029110 /DB_XREF=gi:4296295 /DB_XREF=UI-R-C0-ip-a-10-0-UI.s1 /CLONE=UI-R-C0-ip-a-10-0-UI /FEA=EST /CNT=2 /TID=Rn.18148.1 /TIER=ConsEnd /STK=1 /UG=Rn.18148 /UG_TITLE=ESTs AI029110 SAP30-like Sap30l 360531 XM_001075034 /// XM_340803 1399152_at BF559107 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF559107 /DB_XREF=gi:11668837 /DB_XREF=UI-R-C1-kw-d-09-0-UI.r1 /CLONE=UI-R-C1-kw-d-09-0-UI /FEA=EST /CNT=2 /TID=Rn.19169.1 /TIER=ConsEnd /STK=1 /UG=Rn.19169 /UG_TITLE=ESTs, Highly similar to EP15 MOUSE EPIDERMAL GROWTH FACTOR RECEPTOR SUBSTRATE SUBSTRATE 15 (M.musculus) BF559107 epidermal growth factor receptor pathway substrate 15 Eps15 313474 NM_001009424 0048268 // clathrin coat assembly // not recorded /// 0048268 // clathrin coat assembly // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation 1399153_at AA996576 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA996576 /DB_XREF=gi:4280343 /DB_XREF=UI-R-C0-hi-d-09-0-UI.s1 /CLONE=UI-R-C0-hi-d-09-0-UI /FEA=EST /CNT=1 /TID=Rn.35998.1 /TIER=ConsEnd /STK=1 /UG=Rn.35998 /UG_TITLE=EST AA996576 RAB5B, member RAS oncogene family Rab5b 288779 NM_001079936 0007032 // endosome organization // not recorded /// 0007032 // endosome organization // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0030100 // regulation of endocytosis // not recorded /// 0030100 // regulation of endocytosis // inferred from electronic annotation 0005622 // intracellular // not recorded /// 0005622 // intracellular // inferred from electronic annotation /// 0005768 // endosome // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0030139 // endocytic vesicle // not recorded /// 0030139 // endocytic vesicle // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0030742 // GTP-dependent protein binding // not recorded /// 0030742 // GTP-dependent protein binding // inferred from electronic annotation 1399154_at BF389273 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF389273 /DB_XREF=gi:11374143 /DB_XREF=UI-R-BS2-bdm-d-06-0-UI.s1 /CLONE=UI-R-BS2-bdm-d-06-0-UI /FEA=EST /CNT=1 /TID=Rn.12228.2 /TIER=ConsEnd /STK=0 /UG=Rn.12228 /UG_TITLE=ESTs BF389273 lysine (K)-specific demethylase 2A Kdm2a 361700 NM_001108515 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1399155_at AA944347 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA944347 /DB_XREF=gi:3104263 /DB_XREF=EST199846 /CLONE=REMAF70 /FEA=EST /CNT=5 /TID=Rn.55372.1 /TIER=ConsEnd /STK=1 /UG=Rn.55372 /UG_TITLE=ESTs AA944347 1399156_at AA900891 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA900891 /DB_XREF=gi:4233387 /DB_XREF=UI-R-E0-dc-a-05-0-UI.s1 /CLONE=UI-R-E0-dc-a-05-0-UI /FEA=EST /CNT=2 /TID=Rn.15125.1 /TIER=ConsEnd /STK=1 /UG=Rn.15125 /UG_TITLE=ESTs AA900891 AT rich interactive domain 2 (Arid-rfx like) Arid2 366980 XM_001059099 /// XM_345867 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation 1399157_at AA849312 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA849312 /DB_XREF=gi:2936852 /DB_XREF=EST192079 /CLONE=RMUAD30 /FEA=EST /CNT=1 /TID=Rn.6445.1 /TIER=ConsEnd /STK=1 /UG=Rn.6445 /UG_TITLE=EST AA849312 similar to NNX3 RGD1310358 308537 NM_001107507 0006357 // regulation of transcription from RNA polymerase II promoter // not recorded /// 0006457 // protein folding // inferred from electronic annotation /// 0009615 // response to virus // not recorded 0005665 // DNA-directed RNA polymerase II, core complex // not recorded /// 0016272 // prefoldin complex // inferred from electronic annotation 0003714 // transcription corepressor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation 1399158_a_at J04943 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:J04943.1 /DB_XREF=gi:203077 /FEA=FLmRNA /CNT=22 /TID=Rn.54537.2 /TIER=FL+Stack /STK=11 /UG=Rn.54537 /LL=25498 /UG_GENE=Npm1 /UG_TITLE=Nucleoplasmin-related protein (Nuclear protein B23 /DEF=Rat nucleolar protein B23.2 mRNA, complete cds, clone JH2. /FL=gb:J04943.1 J04943 nucleophosmin (nucleolar phosphoprotein B23, numatrin) Npm1 25498 NM_012992 0000055 // ribosomal large subunit export from nucleus // not recorded /// 0000056 // ribosomal small subunit export from nucleus // not recorded /// 0006334 // nucleosome assembly // not recorded /// 0006407 // rRNA export from nucleus // not recorded /// 0006884 // cell volume homeostasis // not recorded /// 0006913 // nucleocytoplasmic transport // not recorded /// 0006950 // response to stress // not recorded /// 0007098 // centrosome cycle // not recorded /// 0007098 // centrosome cycle // inferred from sequence or structural similarity /// 0007569 // cell aging // not recorded /// 0007569 // cell aging // inferred from sequence or structural similarity /// 0008104 // protein localization // not recorded /// 0008284 // positive regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // not recorded /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0010824 // regulation of centrosome duplication // not recorded /// 0010825 // positive regulation of centrosome duplication // not recorded /// 0010826 // negative regulation of centrosome duplication // not recorded /// 0016049 // cell growth // not recorded /// 0031328 // positive regulation of cellular biosynthetic process // not recorded /// 0042273 // ribosomal large subunit biogenesis // not recorded /// 0042274 // ribosomal small subunit biogenesis // not recorded /// 0043085 // positive regulation of catalytic activity // inferred from direct assay /// 0043516 // regulation of DNA damage response, signal transduction by p53 class mediator // not recorded /// 0045740 // positive regulation of DNA replication // inferred from direct assay /// 0045767 // regulation of anti-apoptosis // inferred from mutant phenotype /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0048025 // negative regulation of nuclear mRNA splicing, via spliceosome // not recorded /// 0051054 // positive regulation of DNA metabolic process // inferred from direct assay /// 0051092 // positive regulation of NF-kappaB transcription factor activity // not recorded /// 0051259 // protein oligomerization // not recorded /// 0051260 // protein homooligomerization // inferred from direct assay /// 0051726 // regulation of cell cycle // not recorded 0001652 // granular component // not recorded /// 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // not recorded /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005813 // centrosome // not recorded /// 0005813 // centrosome // inferred from sequence or structural similarity /// 0005829 // cytosol // not recorded /// 0015934 // large ribosomal subunit // not recorded /// 0015935 // small ribosomal subunit // not recorded /// 0016607 // nuclear speck // not recorded /// 0030529 // ribonucleoprotein complex // not recorded /// 0031616 // spindle pole centrosome // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003713 // transcription coactivator activity // not recorded /// 0003723 // RNA binding // inferred from electronic annotation /// 0003723 // RNA binding // not recorded /// 0005515 // protein binding // not recorded /// 0005547 // phosphatidylinositol-3,4,5-trisphosphate binding // inferred from physical interaction /// 0019843 // rRNA binding // not recorded /// 0019899 // enzyme binding // inferred from direct assay /// 0019899 // enzyme binding // inferred from physical interaction /// 0030957 // Tat protein binding // not recorded /// 0042393 // histone binding // not recorded /// 0042803 // protein homodimerization activity // not recorded /// 0043023 // ribosomal large subunit binding // not recorded /// 0043024 // ribosomal small subunit binding // not recorded /// 0046982 // protein heterodimerization activity // not recorded /// 0051059 // NF-kappaB binding // not recorded /// 0051059 // NF-kappaB binding // inferred from sequence or structural similarity /// 0051082 // unfolded protein binding // not recorded /// 0051082 // unfolded protein binding // inferred from sequence or structural similarity 1399159_a_at NM_057097 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:NM_057097.1 /DB_XREF=gi:16923935 /GEN=Vamp3 /FEA=FLmRNA /CNT=1 /TID=Rn.8480.1 /TIER=FL /STK=1 /UG=Rn.8480 /DEF=Rattus norvegicus vesicle-associated membrane protein 3 (Vamp3), mRNA. /PROD=vesicle-associated membrane protein 3 /FL=gb:NM_057097.1 NM_057097 vesicle-associated membrane protein 3 Vamp3 29528 NM_057097 0001921 // positive regulation of receptor recycling // not recorded /// 0001921 // positive regulation of receptor recycling // inferred from sequence or structural similarity /// 0001921 // positive regulation of receptor recycling // inferred from electronic annotation /// 0006461 // protein complex assembly // inferred from direct assay /// 0016192 // vesicle-mediated transport // not recorded /// 0016192 // vesicle-mediated transport // inferred from sequence or structural similarity /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0017156 // calcium ion-dependent exocytosis // inferred from electronic annotation /// 0017156 // calcium ion-dependent exocytosis // not recorded /// 0034446 // substrate adhesion-dependent cell spreading // not recorded /// 0034446 // substrate adhesion-dependent cell spreading // inferred from sequence or structural similarity /// 0034446 // substrate adhesion-dependent cell spreading // inferred from electronic annotation /// 0042147 // retrograde transport, endosome to Golgi // inferred from sequence or structural similarity 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0019717 // synaptosome // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // not recorded /// 0031201 // SNARE complex // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // not recorded /// 0045202 // synapse // inferred from electronic annotation /// 0055037 // recycling endosome // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1399160_a_at U13177 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:U13177.1 /DB_XREF=gi:595669 /GEN=E217kB /FEA=FLmRNA /CNT=2 /TID=Rn.2778.2 /TIER=FL /STK=1 /UG=Rn.2778 /LL=81920 /DEF=Rattus norvegicus clone ubc4a ubiquitin conjugating enzyme (E217kB) mRNA, complete cds. /PROD=ubiquitin conjugating enzyme /FL=gb:U13177.1 U13177 ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast) Ube2d3 81920 NM_031237 0000209 // protein polyubiquitination // not recorded /// 0000209 // protein polyubiquitination // inferred from sequence or structural similarity /// 0006281 // DNA repair // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0006513 // protein monoubiquitination // not recorded /// 0006915 // apoptosis // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0016567 // protein ubiquitination // not recorded /// 0030509 // BMP signaling pathway // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation /// 0070936 // protein K48-linked ubiquitination // not recorded /// 0070936 // protein K48-linked ubiquitination // inferred from sequence or structural similarity /// 0070979 // protein K11-linked ubiquitination // not recorded /// 0070979 // protein K11-linked ubiquitination // inferred from sequence or structural similarity 0005768 // endosome // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activity // not recorded /// 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation 1399161_a_at AF148323 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AF148323.1 /DB_XREF=gi:8131849 /GEN=APPILS /FEA=FLmRNA /CNT=1 /TID=Rn.22516.2 /TIER=FL /STK=1 /UG=Rn.22516 /LL=80897 /DEF=Rattus norvegicus aminopeptidase PILS (APPILS) mRNA, complete cds. /PROD=aminopeptidase PILS /FL=gb:AF148323.1 AF148323 endoplasmic reticulum aminopeptidase 1 Erap1 80897 NM_030836 0006508 // proteolysis // inferred from mutant phenotype /// 0006508 // proteolysis // inferred from electronic annotation /// 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0006509 // membrane protein ectodomain proteolysis // inferred from sequence or structural similarity /// 0008152 // metabolic process // not recorded /// 0009617 // response to bacterium // not recorded /// 0019882 // antigen processing and presentation // traceable author statement /// 0045766 // positive regulation of angiogenesis // inferred from electronic annotation /// 0045766 // positive regulation of angiogenesis // not recorded 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004177 // aminopeptidase activity // inferred from mutant phenotype /// 0004177 // aminopeptidase activity // not recorded /// 0004177 // aminopeptidase activity // inferred from sequence or structural similarity /// 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0004872 // receptor activity // inferred from electronic annotation /// 0005138 // interleukin-6 receptor binding // not recorded /// 0005138 // interleukin-6 receptor binding // inferred from sequence or structural similarity /// 0005515 // protein binding // not recorded /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008235 // metalloexopeptidase activity // not recorded /// 0008235 // metalloexopeptidase activity // inferred from sequence or structural similarity /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from mutant phenotype /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation 1399162_a_at AJ277077 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AJ277077.2 /DB_XREF=gi:9843868 /GEN=DDB1 /FEA=mRNA /CNT=6 /TID=Rn.8402.1 /TIER=ConsEnd /STK=0 /UG=Rn.8402 /LL=64470 /DEF=Rattus norvegicus mRNA for damage-specific DNA binding protein 1 (DDB1 gene). /PROD=damage-specific DNA binding protein 1 AJ277077 damage-specific DNA binding protein 1 Ddb1 64470 XM_002725785 /// XM_002728866 0000075 // cell cycle checkpoint // inferred from electronic annotation /// 0000075 // cell cycle checkpoint // not recorded /// 0000718 // nucleotide-excision repair, DNA damage removal // not recorded /// 0006281 // DNA repair // traceable author statement /// 0006281 // DNA repair // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0031146 // SCF-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity 0005634 // nucleus // not recorded /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // not recorded /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0019005 // SCF ubiquitin ligase complex // inferred from electronic annotation /// 0031464 // Cul4A-RING ubiquitin ligase complex // not recorded /// 0031464 // Cul4A-RING ubiquitin ligase complex // inferred from sequence or structural similarity /// 0031465 // Cul4B-RING ubiquitin ligase complex // not recorded /// 0031465 // Cul4B-RING ubiquitin ligase complex // inferred from sequence or structural similarity 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from mutant phenotype /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // not recorded 1399163_a_at BM388880 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BM388880 /DB_XREF=gi:18188933 /DB_XREF=UI-R-DZ0-ckn-m-24-0-UI.s1 /CLONE=UI-R-DZ0-ckn-m-24-0-UI /FEA=EST /CNT=26 /TID=Rn.37500.7 /TIER=Stack /STK=19 /UG=Rn.37500 /LL=65137 /UG_GENE=Ruvbl1 /UG_TITLE=RuvB-like protein 1 BM388880 homer homolog 1 (Drosophila) Homer1 29546 NM_031707 0003009 // skeletal muscle contraction // not recorded /// 0006950 // response to stress // inferred from expression pattern /// 0007216 // metabotropic glutamate receptor signaling pathway // inferred from direct assay /// 0007623 // circadian rhythm // inferred from expression pattern /// 0032236 // positive regulation of calcium ion transport via store-operated calcium channel activity // not recorded /// 0035094 // response to nicotine // inferred from expression pattern /// 0042220 // response to cocaine // inferred from expression pattern /// 0048741 // skeletal muscle fiber development // not recorded 0005624 // membrane fraction // not recorded /// 0005624 // membrane fraction // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005792 // microsome // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0014069 // postsynaptic density // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0019717 // synaptosome // inferred from direct assay /// 0030018 // Z disc // not recorded /// 0030054 // cell junction // inferred from electronic annotation /// 0030136 // clathrin-coated vesicle // inferred from direct assay /// 0030425 // dendrite // inferred from direct assay /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0043025 // neuronal cell body // inferred from direct assay /// 0043034 // costamere // not recorded /// 0043198 // dendritic shaft // inferred from direct assay /// 0045202 // synapse // inferred from direct assay /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation /// 0060076 // excitatory synapse // inferred from direct assay 0005102 // receptor binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0019904 // protein domain specific binding // inferred from physical interaction /// 0031802 // type 5 metabotropic glutamate receptor binding // inferred from physical interaction /// 0035256 // metabotropic glutamate receptor binding // inferred from physical interaction 1399164_a_at BE112193 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BE112193 /DB_XREF=gi:8504298 /DB_XREF=UI-R-BJ1-avg-g-09-0-UI.s1 /CLONE=UI-R-BJ1-avg-g-09-0-UI /FEA=EST /CNT=9 /TID=Rn.16772.1 /TIER=ConsEnd /STK=4 /UG=Rn.16772 /UG_TITLE=ESTs BE112193 similar to RIKEN cDNA 1810030N24 RGD1305158 297971 NM_001106644 1399165_a_at AA943500 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:AA943500 /DB_XREF=gi:3103416 /DB_XREF=EST198999 /CLONE=RBRAK64 /FEA=EST /CNT=1 /TID=Rn.44186.2 /TIER=ConsEnd /STK=1 /UG=Rn.44186 /UG_TITLE=ESTs AA943500 coiled-coil domain containing 97 Ccdc97 292724 NM_001106235 1399166_a_at BF420294 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BF420294 /DB_XREF=gi:11408283 /DB_XREF=UI-R-BJ2-bpl-b-10-0-UI.s1 /CLONE=UI-R-BJ2-bpl-b-10-0-UI /FEA=EST /CNT=7 /TID=Rn.37635.1 /TIER=ConsEnd /STK=0 /UG=Rn.37635 /UG_TITLE=ESTs, Highly similar to S58284 BCL7B protein (H.sapiens) BF420294 B-cell CLL/lymphoma 7B Bcl7b 368001 NM_001109021 1399167_a_at BI278183 Rattus norvegicus Jun 9, 2011 Consensus sequence GenBank gb:BI278183 /DB_XREF=gi:14924779 /DB_XREF=UI-R-CZ0-bye-d-10-0-UI.s1 /CLONE=UI-R-CZ0-bye-d-10-0-UI /FEA=EST /CNT=7 /TID=Rn.1725.1 /TIER=ConsEnd /STK=0 /UG=Rn.1725 /UG_TITLE=ESTs, Moderately similar to Gab1 (H.sapiens) BI278183 GRB2-associated binding protein 1 Gab1 361388 NM_001108444 0000187 // activation of MAPK activity // not recorded /// 0006979 // response to oxidative stress // not recorded /// 0007165 // signal transduction // not recorded /// 0007173 // epidermal growth factor receptor signaling pathway // not recorded /// 0007257 // activation of JUN kinase activity // not recorded /// 0007507 // heart development // not recorded /// 0008544 // epidermis development // not recorded /// 0030334 // regulation of cell migration // not recorded /// 0043410 // positive regulation of MAPKKK cascade // not recorded /// 0048008 // platelet-derived growth factor receptor signaling pathway // not recorded /// 0060711 // labyrinthine layer development // not recorded /// 0070102 // interleukin-6-mediated signaling pathway // not recorded 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded 0004871 // signal transducer activity // not recorded /// 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // not recorded AFFX-BioB-3_at --Control Escherichia coli Jun 9, 2011 Control sequence Affymetrix Proprietary Database E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2755-3052 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioB-3 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation AFFX-BioB-5_at --Control Escherichia coli Jun 9, 2011 Control sequence Affymetrix Proprietary Database E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2032-2305 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioB-5 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation AFFX-BioB-M_at --Control Escherichia coli Jun 9, 2011 Control sequence Affymetrix Proprietary Database E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2482-2739 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioB-M 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation AFFX-BioC-3_at --Control Escherichia coli Jun 9, 2011 Control sequence Affymetrix Proprietary Database E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4626-4878 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioC-3 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation AFFX-BioC-5_at --Control Escherichia coli Jun 9, 2011 Control sequence Affymetrix Proprietary Database E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4218-4566 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioC-5 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation AFFX-BioDn-3_at --Control Escherichia coli Jun 9, 2011 Control sequence Affymetrix Proprietary Database E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5286-5570 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioDn-3 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation AFFX-BioDn-5_at --Control Escherichia coli Jun 9, 2011 Control sequence Affymetrix Proprietary Database E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4980-5256 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioDn-5 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation AFFX-CreX-3_at --Control Enterobacteria phage P1 Jun 9, 2011 Control sequence Affymetrix Proprietary Database Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 1089-1495 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. AFFX-CreX-3 0006310 // DNA recombination // inferred from electronic annotation /// 0015074 // DNA integration // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation AFFX-CreX-5_at --Control Enterobacteria phage P1 Jun 9, 2011 Control sequence Affymetrix Proprietary Database Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 513-1047 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. AFFX-CreX-5 0006310 // DNA recombination // inferred from electronic annotation /// 0015074 // DNA integration // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation AFFX-DapX-3_at --Control Bacillus subtilis Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=jojG /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2684-3130 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. AFFX-DapX-3 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0006464 // protein modification process // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009085 // lysine biosynthetic process // inferred from electronic annotation /// 0009089 // lysine biosynthetic process via diaminopimelate // inferred from electronic annotation /// 0019242 // methylglyoxal biosynthetic process // inferred from electronic annotation /// 0019877 // diaminopimelate biosynthetic process // inferred from electronic annotation /// 0042245 // RNA repair // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 0004810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 0008929 // methylglyoxal synthase activity // inferred from electronic annotation /// 0016437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation AFFX-DapX-5_at --Control Bacillus subtilis Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=dapB /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 1428-1926 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. AFFX-DapX-5 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0006464 // protein modification process // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009085 // lysine biosynthetic process // inferred from electronic annotation /// 0009089 // lysine biosynthetic process via diaminopimelate // inferred from electronic annotation /// 0019242 // methylglyoxal biosynthetic process // inferred from electronic annotation /// 0019877 // diaminopimelate biosynthetic process // inferred from electronic annotation /// 0042245 // RNA repair // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 0004810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 0008929 // methylglyoxal synthase activity // inferred from electronic annotation /// 0016437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation AFFX-DapX-M_at --Control Bacillus subtilis Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=dapB, jojF /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2020-2580 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. AFFX-DapX-M 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0006464 // protein modification process // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009085 // lysine biosynthetic process // inferred from electronic annotation /// 0009089 // lysine biosynthetic process via diaminopimelate // inferred from electronic annotation /// 0019242 // methylglyoxal biosynthetic process // inferred from electronic annotation /// 0019877 // diaminopimelate biosynthetic process // inferred from electronic annotation /// 0042245 // RNA repair // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 0004810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 0008929 // methylglyoxal synthase activity // inferred from electronic annotation /// 0016437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation AFFX-LysX-3_at --Control Bacillus subtilis Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 1061-1343 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). AFFX-LysX-3 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009085 // lysine biosynthetic process // inferred from electronic annotation /// 0009089 // lysine biosynthetic process via diaminopimelate // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008836 // diaminopimelate decarboxylase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation AFFX-LysX-5_at --Control Bacillus subtilis Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 387-658 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). AFFX-LysX-5 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009085 // lysine biosynthetic process // inferred from electronic annotation /// 0009089 // lysine biosynthetic process via diaminopimelate // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008836 // diaminopimelate decarboxylase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation AFFX-LysX-M_at --Control Bacillus subtilis Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 720-990 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). AFFX-LysX-M 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009085 // lysine biosynthetic process // inferred from electronic annotation /// 0009089 // lysine biosynthetic process via diaminopimelate // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008836 // diaminopimelate decarboxylase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation AFFX-PheX-3_at --Control Bacillus subtilis Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=pheB /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2885-3326 of gb:M24537.1, not 100% identical /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. AFFX-PheX-3 0000160 // two-component signal transduction system (phosphorelay) // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009073 // aromatic amino acid family biosynthetic process // inferred from electronic annotation /// 0009094 // L-phenylalanine biosynthetic process // inferred from electronic annotation /// 0030435 // sporulation resulting in formation of a cellular spore // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000155 // two-component sensor activity // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0004664 // prephenate dehydratase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation AFFX-PheX-5_at --Control Bacillus subtilis Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2028-2375 of gb:M24537.1, not 100% identical /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. AFFX-PheX-5 0000160 // two-component signal transduction system (phosphorelay) // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009073 // aromatic amino acid family biosynthetic process // inferred from electronic annotation /// 0009094 // L-phenylalanine biosynthetic process // inferred from electronic annotation /// 0030435 // sporulation resulting in formation of a cellular spore // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000155 // two-component sensor activity // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0004664 // prephenate dehydratase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation AFFX-PheX-M_at --Control Bacillus subtilis Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2437-2828 of gb:M24537.1 /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. AFFX-PheX-M 0000160 // two-component signal transduction system (phosphorelay) // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009073 // aromatic amino acid family biosynthetic process // inferred from electronic annotation /// 0009094 // L-phenylalanine biosynthetic process // inferred from electronic annotation /// 0030435 // sporulation resulting in formation of a cellular spore // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000155 // two-component sensor activity // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0004664 // prephenate dehydratase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation AFFX-r2-Bs-dap-3_at --Control Bacillus subtilis Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=jojG /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2634-3089 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. AFFX-r2-Bs-dap-3 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0006464 // protein modification process // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009085 // lysine biosynthetic process // inferred from electronic annotation /// 0009089 // lysine biosynthetic process via diaminopimelate // inferred from electronic annotation /// 0019242 // methylglyoxal biosynthetic process // inferred from electronic annotation /// 0019877 // diaminopimelate biosynthetic process // inferred from electronic annotation /// 0042245 // RNA repair // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 0004810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 0008929 // methylglyoxal synthase activity // inferred from electronic annotation /// 0016437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation AFFX-r2-Bs-dap-5_at --Control Bacillus subtilis Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=dapB /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 1439-1846 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. AFFX-r2-Bs-dap-5 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0006464 // protein modification process // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009085 // lysine biosynthetic process // inferred from electronic annotation /// 0009089 // lysine biosynthetic process via diaminopimelate // inferred from electronic annotation /// 0019242 // methylglyoxal biosynthetic process // inferred from electronic annotation /// 0019877 // diaminopimelate biosynthetic process // inferred from electronic annotation /// 0042245 // RNA repair // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 0004810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 0008929 // methylglyoxal synthase activity // inferred from electronic annotation /// 0016437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation AFFX-r2-Bs-dap-M_at --Control Bacillus subtilis Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=dapB, jojF /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2055-2578 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. AFFX-r2-Bs-dap-M 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0006464 // protein modification process // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009085 // lysine biosynthetic process // inferred from electronic annotation /// 0009089 // lysine biosynthetic process via diaminopimelate // inferred from electronic annotation /// 0019242 // methylglyoxal biosynthetic process // inferred from electronic annotation /// 0019877 // diaminopimelate biosynthetic process // inferred from electronic annotation /// 0042245 // RNA repair // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 0004810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 0008929 // methylglyoxal synthase activity // inferred from electronic annotation /// 0016437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation AFFX-r2-Bs-lys-3_at --Control Bacillus subtilis Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 1008-1263 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). AFFX-r2-Bs-lys-3 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009085 // lysine biosynthetic process // inferred from electronic annotation /// 0009089 // lysine biosynthetic process via diaminopimelate // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008836 // diaminopimelate decarboxylase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation AFFX-r2-Bs-lys-5_at --Control Bacillus subtilis Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 411-659 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). AFFX-r2-Bs-lys-5 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009085 // lysine biosynthetic process // inferred from electronic annotation /// 0009089 // lysine biosynthetic process via diaminopimelate // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008836 // diaminopimelate decarboxylase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation AFFX-r2-Bs-lys-M_at --Control Bacillus subtilis Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 673-1002 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). AFFX-r2-Bs-lys-M 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009085 // lysine biosynthetic process // inferred from electronic annotation /// 0009089 // lysine biosynthetic process via diaminopimelate // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0008836 // diaminopimelate decarboxylase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation AFFX-r2-Bs-phe-3_at --Control Bacillus subtilis Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=pheB /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2897-3200 of gb:M24537.1, not 100% identical /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. AFFX-r2-Bs-phe-3 0000160 // two-component signal transduction system (phosphorelay) // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009073 // aromatic amino acid family biosynthetic process // inferred from electronic annotation /// 0009094 // L-phenylalanine biosynthetic process // inferred from electronic annotation /// 0030435 // sporulation resulting in formation of a cellular spore // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000155 // two-component sensor activity // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0004664 // prephenate dehydratase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation AFFX-r2-Bs-phe-5_at --Control Bacillus subtilis Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2116-2382 of gb:M24537.1 /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. AFFX-r2-Bs-phe-5 0000160 // two-component signal transduction system (phosphorelay) // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009073 // aromatic amino acid family biosynthetic process // inferred from electronic annotation /// 0009094 // L-phenylalanine biosynthetic process // inferred from electronic annotation /// 0030435 // sporulation resulting in formation of a cellular spore // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000155 // two-component sensor activity // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0004664 // prephenate dehydratase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation AFFX-r2-Bs-phe-M_at --Control Bacillus subtilis Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2484-2875 of gb:M24537.1 /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. AFFX-r2-Bs-phe-M 0000160 // two-component signal transduction system (phosphorelay) // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009073 // aromatic amino acid family biosynthetic process // inferred from electronic annotation /// 0009094 // L-phenylalanine biosynthetic process // inferred from electronic annotation /// 0030435 // sporulation resulting in formation of a cellular spore // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000155 // two-component sensor activity // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0004664 // prephenate dehydratase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation AFFX-r2-Bs-thr-3_s_at --Control Bacillus subtilis Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=thrB /DB_XREF=gb:X04603.1 /NOTE=SIF corresponding to nucleotides 1735-2143 of gb:X04603.1 /DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase. AFFX-r2-Bs-thr-3 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006566 // threonine metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009082 // branched chain family amino acid biosynthetic process // inferred from electronic annotation /// 0009086 // methionine biosynthetic process // inferred from electronic annotation /// 0009088 // threonine biosynthetic process // inferred from electronic annotation /// 0009097 // isoleucine biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004412 // homoserine dehydrogenase activity // inferred from electronic annotation /// 0004413 // homoserine kinase activity // inferred from electronic annotation /// 0004795 // threonine synthase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from electronic annotation AFFX-r2-Bs-thr-5_s_at --Control Bacillus subtilis Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=thrC /DB_XREF=gb:X04603.1 /NOTE=SIF corresponding to nucleotides 290-888 of gb:X04603.1 /DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase. AFFX-r2-Bs-thr-5 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006566 // threonine metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009082 // branched chain family amino acid biosynthetic process // inferred from electronic annotation /// 0009086 // methionine biosynthetic process // inferred from electronic annotation /// 0009088 // threonine biosynthetic process // inferred from electronic annotation /// 0009097 // isoleucine biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004412 // homoserine dehydrogenase activity // inferred from electronic annotation /// 0004413 // homoserine kinase activity // inferred from electronic annotation /// 0004795 // threonine synthase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from electronic annotation AFFX-r2-Bs-thr-M_s_at --Control Bacillus subtilis Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=thrC, thrB /DB_XREF=gb:X04603.1 /NOTE=SIF corresponding to nucleotides 1045-1556 of gb:X04603.1 /DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase. AFFX-r2-Bs-thr-M 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006566 // threonine metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009082 // branched chain family amino acid biosynthetic process // inferred from electronic annotation /// 0009086 // methionine biosynthetic process // inferred from electronic annotation /// 0009088 // threonine biosynthetic process // inferred from electronic annotation /// 0009097 // isoleucine biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004412 // homoserine dehydrogenase activity // inferred from electronic annotation /// 0004413 // homoserine kinase activity // inferred from electronic annotation /// 0004795 // threonine synthase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from electronic annotation AFFX-r2-Ec-bioB-3_at --Control Escherichia coli Jun 9, 2011 Control sequence Affymetrix Proprietary Database E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2772-3004 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-r2-Ec-bioB-3 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation AFFX-r2-Ec-bioB-5_at --Control Escherichia coli Jun 9, 2011 Control sequence Affymetrix Proprietary Database E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2071-2304 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-r2-Ec-bioB-5 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation AFFX-r2-Ec-bioB-M_at --Control Escherichia coli Jun 9, 2011 Control sequence Affymetrix Proprietary Database E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2393-2682 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-r2-Ec-bioB-M 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation AFFX-r2-Ec-bioC-3_at --Control Escherichia coli Jun 9, 2011 Control sequence Affymetrix Proprietary Database E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4608-4883 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-r2-Ec-bioC-3 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation AFFX-r2-Ec-bioC-5_at --Control Escherichia coli Jun 9, 2011 Control sequence Affymetrix Proprietary Database E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4257-4573 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-r2-Ec-bioC-5 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation AFFX-r2-Ec-bioD-3_at --Control Escherichia coli Jun 9, 2011 Control sequence Affymetrix Proprietary Database E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5312-5559 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-r2-Ec-bioD-3 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation AFFX-r2-Ec-bioD-5_at --Control Escherichia coli Jun 9, 2011 Control sequence Affymetrix Proprietary Database E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5024-5244 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-r2-Ec-bioD-5 0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from mutant phenotype /// 0051186 // cofactor metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from direct assay /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from direct assay /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from direct assay /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from direct assay /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from direct assay /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation AFFX-r2-P1-cre-3_at --Control Enterobacteria phage P1 Jun 9, 2011 Control sequence Affymetrix Proprietary Database Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 1032-1270 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. AFFX-r2-P1-cre-3 0006310 // DNA recombination // inferred from electronic annotation /// 0015074 // DNA integration // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation AFFX-r2-P1-cre-5_at --Control Enterobacteria phage P1 Jun 9, 2011 Control sequence Affymetrix Proprietary Database Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 581-1001 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. AFFX-r2-P1-cre-5 0006310 // DNA recombination // inferred from electronic annotation /// 0015074 // DNA integration // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation AFFX-ThrX-3_at --Control Homo sapiens Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=thrB /DB_XREF=gb:X04603.1 /NOTE=SIF corresponding to nucleotides 1689-2151 of gb:X04603.1 /DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase (EC 2.7.1.39 and EC 4.2.99.2, respectively). AFFX-ThrX-3 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006566 // threonine metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009082 // branched chain family amino acid biosynthetic process // inferred from electronic annotation /// 0009086 // methionine biosynthetic process // inferred from electronic annotation /// 0009088 // threonine biosynthetic process // inferred from electronic annotation /// 0009097 // isoleucine biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004412 // homoserine dehydrogenase activity // inferred from electronic annotation /// 0004413 // homoserine kinase activity // inferred from electronic annotation /// 0004795 // threonine synthase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from electronic annotation AFFX-ThrX-5_at --Control Homo sapiens Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=thrC /DB_XREF=gb:X04603.1 /NOTE=SIF corresponding to nucleotides 288-932 of gb:X04603.1 /DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase (EC 2.7.1.39 and EC 4.2.99.2, respectively). AFFX-ThrX-5 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006566 // threonine metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009082 // branched chain family amino acid biosynthetic process // inferred from electronic annotation /// 0009086 // methionine biosynthetic process // inferred from electronic annotation /// 0009088 // threonine biosynthetic process // inferred from electronic annotation /// 0009097 // isoleucine biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004412 // homoserine dehydrogenase activity // inferred from electronic annotation /// 0004413 // homoserine kinase activity // inferred from electronic annotation /// 0004795 // threonine synthase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from electronic annotation AFFX-ThrX-M_at --Control Homo sapiens Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=thrC, thrB /DB_XREF=gb:X04603.1 /NOTE=SIF corresponding to nucleotides 995-1562 of gb:X04603.1, not 100% identical /DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase (EC 2.7.1.39 and EC 4.2.99.2, respectively). AFFX-ThrX-M 0006520 // cellular amino acid metabolic process // inferred from electronic annotation /// 0006566 // threonine metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009082 // branched chain family amino acid biosynthetic process // inferred from electronic annotation /// 0009086 // methionine biosynthetic process // inferred from electronic annotation /// 0009088 // threonine biosynthetic process // inferred from electronic annotation /// 0009097 // isoleucine biosynthetic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004412 // homoserine dehydrogenase activity // inferred from electronic annotation /// 0004413 // homoserine kinase activity // inferred from electronic annotation /// 0004795 // threonine synthase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016597 // amino acid binding // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0050661 // NADP or NADPH binding // inferred from electronic annotation AFFX-TrpnX-3_at --Control Bacillus subtilis Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=trpC, trpF /DB_XREF=gb:K01391.1 /NOTE=SIF corresponding to nucleotides 3790-4368 of gb:K01391.1, not 100% identical /DEF=B.subtilis tryptophan (trp) operon, complete cds. AFFX-TrpnX-3 0000105 // histidine biosynthetic process // inferred from electronic annotation /// 0000162 // tryptophan biosynthetic process // inferred from electronic annotation /// 0006568 // tryptophan metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009073 // aromatic amino acid family biosynthetic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004048 // anthranilate phosphoribosyltransferase activity // inferred from electronic annotation /// 0004049 // anthranilate synthase activity // inferred from electronic annotation /// 0004400 // histidinol-phosphate transaminase activity // inferred from electronic annotation /// 0004425 // indole-3-glycerol-phosphate synthase activity // inferred from electronic annotation /// 0004640 // phosphoribosylanthranilate isomerase activity // inferred from electronic annotation /// 0004834 // tryptophan synthase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation /// 0016833 // oxo-acid-lyase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation AFFX-TrpnX-5_at --Control Bacillus subtilis Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=trpE, trpD /DB_XREF=gb:K01391.1 /NOTE=SIF corresponding to nucleotides 1953-2483 of gb:K01391.1, not 100% identical /DEF=B.subtilis tryptophan (trp) operon, complete cds. AFFX-TrpnX-5 0000105 // histidine biosynthetic process // inferred from electronic annotation /// 0000162 // tryptophan biosynthetic process // inferred from electronic annotation /// 0006568 // tryptophan metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009073 // aromatic amino acid family biosynthetic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004048 // anthranilate phosphoribosyltransferase activity // inferred from electronic annotation /// 0004049 // anthranilate synthase activity // inferred from electronic annotation /// 0004400 // histidinol-phosphate transaminase activity // inferred from electronic annotation /// 0004425 // indole-3-glycerol-phosphate synthase activity // inferred from electronic annotation /// 0004640 // phosphoribosylanthranilate isomerase activity // inferred from electronic annotation /// 0004834 // tryptophan synthase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation /// 0016833 // oxo-acid-lyase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation AFFX-TrpnX-M_at --Control Bacillus subtilis Jun 9, 2011 Control sequence Affymetrix Proprietary Database B. subtilis /GEN=trpD, trpC /DB_XREF=gb:K01391.1 /NOTE=SIF corresponding to nucleotides 2880-3359 of gb:K01391.1, not 100% identical /DEF=B.subtilis tryptophan (trp) operon, complete cds. AFFX-TrpnX-M 0000105 // histidine biosynthetic process // inferred from electronic annotation /// 0000162 // tryptophan biosynthetic process // inferred from electronic annotation /// 0006568 // tryptophan metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009073 // aromatic amino acid family biosynthetic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004048 // anthranilate phosphoribosyltransferase activity // inferred from electronic annotation /// 0004049 // anthranilate synthase activity // inferred from electronic annotation /// 0004400 // histidinol-phosphate transaminase activity // inferred from electronic annotation /// 0004425 // indole-3-glycerol-phosphate synthase activity // inferred from electronic annotation /// 0004640 // phosphoribosylanthranilate isomerase activity // inferred from electronic annotation /// 0004834 // tryptophan synthase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation /// 0016833 // oxo-acid-lyase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation AFFX_ratb1/X12957_at --Control Rattus norvegicus Jun 9, 2011 Control sequence Affymetrix Proprietary Database R. norvegicus /GEN=b1 /DB_XREF=gb:X12957.1 /DEF=Rat DNA for B1 repeat (1-42) from gamma crystallin gene cluster. AFFX_ratb1/X12957 AFFX_ratb2/X14115_at --Control Rattus norvegicus Jun 9, 2011 Control sequence Affymetrix Proprietary Database R. norvegicus /GEN=b2 /DB_XREF=gb:X14115.1 /DEF=Rat DNA for B2 repeat (1-12) from gamma crystallin gene cluster. AFFX_ratb2/X14115 AFFX_rat_5S_rRNA_at --Control Rattus norvegicus Jun 9, 2011 Control sequence Affymetrix Proprietary Database R.norvegicus /GEN=5S rRNA /DB_XREF=gb:X83747.1 /DEF=R.norvegicus 5S rRNA gene (clone pRA5S2). AFFX_rat_5S_rRNA AFFX_Rat_beta-actin_3_at --Control Rattus norvegicus Jun 9, 2011 Control sequence Affymetrix Proprietary Database R. norvegicus /GEN=beta-actin /DB_XREF=gb:V01217.1 /DEF=Rat gene encoding cytoplasmic beta-actin. AFFX_Rat_beta-actin_3 0007409 // axonogenesis // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0035267 // NuA4 histone acetyltransferase complex // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0070688 // MLL5-L complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0050998 // nitric-oxide synthase binding // inferred from electronic annotation AFFX_Rat_beta-actin_5_at --Control Rattus norvegicus Jun 9, 2011 Control sequence Affymetrix Proprietary Database R. norvegicus /GEN=beta-actin /DB_XREF=gb:V01217.1 /DEF=Rat gene encoding cytoplasmic beta-actin. AFFX_Rat_beta-actin_5 0007409 // axonogenesis // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0035267 // NuA4 histone acetyltransferase complex // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0070688 // MLL5-L complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0050998 // nitric-oxide synthase binding // inferred from electronic annotation AFFX_Rat_beta-actin_M_at --Control Rattus norvegicus Jun 9, 2011 Control sequence Affymetrix Proprietary Database R. norvegicus /GEN=beta-actin /DB_XREF=gb:V01217.1 /DEF=Rat gene encoding cytoplasmic beta-actin. AFFX_Rat_beta-actin_M 0007409 // axonogenesis // inferred from direct assay 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0030424 // axon // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation /// 0035267 // NuA4 histone acetyltransferase complex // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct assay /// 0070688 // MLL5-L complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0019894 // kinesin binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0050998 // nitric-oxide synthase binding // inferred from electronic annotation AFFX_Rat_GAPDH_3_at --Control Rattus norvegicus Jun 9, 2011 Control sequence Affymetrix Proprietary Database R. norvegicus /GEN=gapd /DB_XREF=gb:X02231.1 /DEF=Rat mRNA for glyceraldehyde-3-phosphate-dehydrogenase (GAPDH) (GAPDH, EC 1.2.1.12). AFFX_Rat_GAPDH_3 glyceraldehyde-3-phosphate dehydrogenase Gapdh 24383 NM_017008 0005975 // carbohydrate metabolic process // inferred from direct assay /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006094 // gluconeogenesis // inferred from direct assay /// 0006096 // glycolysis // inferred from direct assay /// 0006096 // glycolysis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from mutant phenotype /// 0007275 // multicellular organismal development // not recorded /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // inferred from direct assay /// 0004365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // inferred from electronic annotation /// 0004365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008943 // glyceraldehyde-3-phosphate dehydrogenase activity // inferred from direct assay /// 0008943 // glyceraldehyde-3-phosphate dehydrogenase activity // inferred from electronic annotation /// 0008943 // glyceraldehyde-3-phosphate dehydrogenase activity // non-traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation AFFX_Rat_GAPDH_5_at --Control Rattus norvegicus Jun 9, 2011 Control sequence Affymetrix Proprietary Database R. norvegicus /GEN=gapd /DB_XREF=gb:X02231.1 /DEF=Rat mRNA for glyceraldehyde-3-phosphate-dehydrogenase (GAPDH) (GAPDH, EC 1.2.1.12). AFFX_Rat_GAPDH_5 glyceraldehyde-3-phosphate dehydrogenase Gapdh 24383 NM_017008 0005975 // carbohydrate metabolic process // inferred from direct assay /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006094 // gluconeogenesis // inferred from direct assay /// 0006096 // glycolysis // inferred from direct assay /// 0006096 // glycolysis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from mutant phenotype /// 0007275 // multicellular organismal development // not recorded /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // inferred from direct assay /// 0004365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // inferred from electronic annotation /// 0004365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008943 // glyceraldehyde-3-phosphate dehydrogenase activity // inferred from direct assay /// 0008943 // glyceraldehyde-3-phosphate dehydrogenase activity // inferred from electronic annotation /// 0008943 // glyceraldehyde-3-phosphate dehydrogenase activity // non-traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation AFFX_Rat_GAPDH_M_at --Control Rattus norvegicus Jun 9, 2011 Control sequence Affymetrix Proprietary Database R. norvegicus /GEN=gapd /DB_XREF=gb:X02231.1 /DEF=Rat mRNA for glyceraldehyde-3-phosphate-dehydrogenase (GAPDH) (GAPDH, EC 1.2.1.12). AFFX_Rat_GAPDH_M glyceraldehyde-3-phosphate dehydrogenase Gapdh 24383 NM_017008 0005975 // carbohydrate metabolic process // inferred from direct assay /// 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006094 // gluconeogenesis // inferred from direct assay /// 0006096 // glycolysis // inferred from direct assay /// 0006096 // glycolysis // inferred from electronic annotation /// 0006915 // apoptosis // inferred from mutant phenotype /// 0007275 // multicellular organismal development // not recorded /// 0008152 // metabolic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005625 // soluble fraction // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // inferred from direct assay 0003824 // catalytic activity // inferred from electronic annotation /// 0004365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // inferred from direct assay /// 0004365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // inferred from electronic annotation /// 0004365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // not recorded /// 0008943 // glyceraldehyde-3-phosphate dehydrogenase activity // inferred from direct assay /// 0008943 // glyceraldehyde-3-phosphate dehydrogenase activity // inferred from electronic annotation /// 0008943 // glyceraldehyde-3-phosphate dehydrogenase activity // non-traceable author statement /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0051287 // NAD or NADH binding // inferred from electronic annotation AFFX_Rat_Hexokinase_3_at --Control Rattus norvegicus Jun 9, 2011 Control sequence Affymetrix Proprietary Database R. norvegicus /GEN=hexokinase /DB_XREF=gb:J04526.1 /DEF=Rattus norvegicus brain hexokinase mRNA, complete cds. AFFX_Rat_Hexokinase_3 hexokinase 1 Hk1 25058 NM_012734 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006096 // glycolysis // inferred from direct assay /// 0006096 // glycolysis // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0010359 // regulation of anion channel activity // inferred from direct assay /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0018107 // peptidyl-threonine phosphorylation // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046835 // carbohydrate phosphorylation // inferred from direct assay /// 0046835 // carbohydrate phosphorylation // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004340 // glucokinase activity // inferred from direct assay /// 0004396 // hexokinase activity // inferred from direct assay /// 0004396 // hexokinase activity // not recorded /// 0004396 // hexokinase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred by curator /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005536 // glucose binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0016887 // ATPase activity // inferred by curator /// 0042803 // protein homodimerization activity // inferred from direct assay AFFX_Rat_Hexokinase_5_at --Control Rattus norvegicus Jun 9, 2011 Control sequence Affymetrix Proprietary Database R. norvegicus /GEN=hexokinase /DB_XREF=gb:J04526.1 /DEF=Rattus norvegicus brain hexokinase mRNA, complete cds. AFFX_Rat_Hexokinase_5 hexokinase 1 Hk1 25058 NM_012734 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006096 // glycolysis // inferred from direct assay /// 0006096 // glycolysis // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0010359 // regulation of anion channel activity // inferred from direct assay /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0018107 // peptidyl-threonine phosphorylation // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046835 // carbohydrate phosphorylation // inferred from direct assay /// 0046835 // carbohydrate phosphorylation // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004340 // glucokinase activity // inferred from direct assay /// 0004396 // hexokinase activity // inferred from direct assay /// 0004396 // hexokinase activity // not recorded /// 0004396 // hexokinase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred by curator /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005536 // glucose binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0016887 // ATPase activity // inferred by curator /// 0042803 // protein homodimerization activity // inferred from direct assay AFFX_Rat_Hexokinase_M_at --Control Rattus norvegicus Jun 9, 2011 Control sequence Affymetrix Proprietary Database R. norvegicus /GEN=hexokinase /DB_XREF=gb:J04526.1 /DEF=Rattus norvegicus brain hexokinase mRNA, complete cds. AFFX_Rat_Hexokinase_M hexokinase 1 Hk1 25058 NM_012734 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006096 // glycolysis // inferred from direct assay /// 0006096 // glycolysis // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0010359 // regulation of anion channel activity // inferred from direct assay /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0018107 // peptidyl-threonine phosphorylation // inferred from direct assay /// 0018108 // peptidyl-tyrosine phosphorylation // inferred from direct assay /// 0043066 // negative regulation of apoptosis // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0046835 // carbohydrate phosphorylation // inferred from direct assay /// 0046835 // carbohydrate phosphorylation // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0005901 // caveola // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004340 // glucokinase activity // inferred from direct assay /// 0004396 // hexokinase activity // inferred from direct assay /// 0004396 // hexokinase activity // not recorded /// 0004396 // hexokinase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred by curator /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0005536 // glucose binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// 0016887 // ATPase activity // inferred by curator /// 0042803 // protein homodimerization activity // inferred from direct assay